# hmmscan :: search sequence(s) against a profile database
# HMMER 3.2.1 (June 2018); http://hmmer.org/
# Copyright (C) 2018 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Claviceps_purpurea_20.1-ASM34735v1/GCA_000347355.1_ASM34735v1_protein.faa
# target HMM database:             /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# output directed to file:         /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Claviceps_purpurea_20.1-ASM34735v1/GCA_000347355.1_ASM34735v1_protein.PFam32-A
# per-seq hits tabular output:     /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Claviceps_purpurea_20.1-ASM34735v1/GCA_000347355.1_ASM34735v1_protein.PFam32-A.tblout
# number of worker threads:        20
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       CCE26533.1  [L=176]
Description: related to PRY1-strong similarity to the plant PR-1 class of pathogen related proteins [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-24   84.8   5.1    1.4e-23   84.1   5.1    1.4  1  CAP       Cysteine-rich secretory protein family


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   5.1   7.8e-28   1.4e-23       1     126 []      33     149 ..      33     149 .. 0.90

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 7.8e-28
                 HHHHHHHHHHTT----EE-HHHHHHHHHHHHHHHHH.T---S-GGG--HHHHHHTT-TEEEEEES--CCCHHHHHHTSHH..............HHHHH CS
         CAP   1 leahNeyRaaaglppLkwdatLekaAqdhardcaashsdsssspeggdllkyaenagkeniaaaseaaedavdsWysepgtynkgketegs.ighftnl 98 
                 l+ hN++R ++g++pL+wd +L++++q++a++c    ++s++s+    ++   + +             ++v+ W se++ yn+++ + +  +ghft++
  CCE26533.1  33 LASHNYFRGQHGANPLTWDTALAQSSQTWANTC----NFSHDSGGEDLAYRTKFTYW-----------GEFVNMWGSERTQYNYSQPKFSEaTGHFTQV 116
                 567******************************....66666655555555555555...........******************************* PP

                 T-SS--EEEEEEEEBTTS-E.......EEEEEE CS
         CAP  99 lwpkstkvGcavatcgngsf.....tfivvcny 126
                 +w++s+ vGca++ cg  +      +++vvc+y
  CCE26533.1 117 VWKNSKTVGCAWKDCGRSGGagkalGYYVVCKY 149
                 ****************9999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.46
# Mc/sec: 1160.61
//
Query:       CCE26534.1  [L=176]
Description: related to PRY1-strong similarity to the plant PR-1 class of pathogen related proteins [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-22   80.5   4.7    2.9e-22   79.8   4.7    1.3  1  CAP       Cysteine-rich secretory protein family


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   4.7   1.6e-26   2.9e-22       1     126 []      33     149 ..      33     149 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 1.6e-26
                 HHHHHHHHHHTT----EE-HHHHHHHHHHHHHHHHH.T---S-GGG--HHHHHHTT-TEEEEEES--CCCHHHHHHTSHH..............HHHHH CS
         CAP   1 leahNeyRaaaglppLkwdatLekaAqdhardcaashsdsssspeggdllkyaenagkeniaaaseaaedavdsWysepgtynkgketegs.ighftnl 98 
                 l+ hN++R+++ + pL+wd +L++++q++a++c    ++s++s+    ++  ++++             ++v+ W  e++ yn+++   +  +ghft++
  CCE26534.1  33 LASHNYFRSQHSADPLTWDTALAQSSQTWANTC----NFSHDSGGEDLAYRTIFKYW-----------GEFVNMWGGERTQYNYDQPIFSEaTGHFTQV 116
                 567******************************....99999999999999999999...........****************9999888******** PP

                 T-SS--EEEEEEEEBTTS-E.......EEEEEE CS
         CAP  99 lwpkstkvGcavatcgngsf.....tfivvcny 126
                 +w++++ vGca+++cg  +      +++vvc+y
  CCE26534.1 117 VWKNTKTVGCAWNYCGRSGGagkalGYYVVCKY 149
                 ****************9999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1316.28
//
Query:       CCE26535.1  [L=176]
Description: related to PRY1-strong similarity to the plant PR-1 class of pathogen related proteins [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-25   87.9   6.2    1.3e-24   87.5   6.2    1.2  1  CAP       Cysteine-rich secretory protein family


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   6.2     7e-29   1.3e-24       1     126 []      33     149 ..      33     149 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 7e-29
                 HHHHHHHHHHTT----EE-HHHHHHHHHHHHHHHHH.T---S-GGG--HHHHHHTT-TEEEEEES--CCCHHHHHHTSHH..............HHHHH CS
         CAP   1 leahNeyRaaaglppLkwdatLekaAqdhardcaashsdsssspeggdllkyaenagkeniaaaseaaedavdsWysepgtynkgketegs.ighftnl 98 
                 l+ hN++R+++ ++pL+wd +L++++q++a++c    ++s++s+  + ++k ++++             ++v+ W se++ yn+++ + +  +ghft+l
  CCE26535.1  33 LASHNYFRTQHSANPLTWDTALAQSSQTWANTC----NFSHDSGGENLVYKTSFKYW-----------GEFVNMWGSERTQYNFDQPKFSAaTGHFTQL 116
                 567******************************....********************...........******************************* PP

                 T-SS--EEEEEEEEBTTS-E.......EEEEEE CS
         CAP  99 lwpkstkvGcavatcgngsf.....tfivvcny 126
                 +w++++ vGca+a+cg  +      +++vvc+y
  CCE26535.1 117 VWKNTKTVGCAWAYCGTSGGagkalGYYVVCKY 149
                 ****************9999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1237.09
//
Query:       CCE26536.1  [L=374]
Description: uncharacterized protein CPUR_00004 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.31   11.1   4.9       0.15   12.1   1.8    2.0  2  DUF1192   Protein of unknown function (DUF1192)


Domain annotation for each model (and alignments):
>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.8   8.5e-06      0.15       7      54 ..      31      78 ..      26      80 .. 0.83
   2 ?   -1.4   0.1      0.14   2.5e+03      28      44 ..     257     273 ..     256     274 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.5e-06
     DUF1192  7 kkptheigqDLslLSveELeerIalLeaEIaRleaaiakkkasraAAe 54
                 +p+ + + DL+l   +EL++r a+ ea Ia ++a ia+++a   A  
  CCE26536.1 31 APPSPAPPLDLQLVERQELRARLAAAEAAIAEADARIARASAESRASA 78
                444577899******************************998766544 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.14
     DUF1192  28 rIalLeaEIaRleaaia 44 
                 +I++ ++E+ R e a++
  CCE26536.1 257 YIQEQTEEVHRFELART 273
                 899999*****998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2677.25
//
Query:       CCE26537.1  [L=174]
Description: related to PRY1-strong similarity to the plant PR-1 class of pathogen related proteins [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-24   87.5   6.6    1.9e-24   86.9   6.6    1.3  1  CAP       Cysteine-rich secretory protein family


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   6.6     1e-28   1.9e-24       1     126 []      33     147 ..      33     147 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 1e-28
                 HHHHHHHHHHTT----EE-HHHHHHHHHHHHHHHHH.T---S-GGG--HHHHHHTT-TEEEEEES--CCCHHHHHHTSHH..............HHHHH CS
         CAP   1 leahNeyRaaaglppLkwdatLekaAqdhardcaashsdsssspeggdllkyaenagkeniaaaseaaedavdsWysepgtynkgketegs.ighftnl 98 
                 l+ hN++R ++ ++pL+wd +L++++q++a++c    ++s++s+  + ++  ++++             ++v+ W se++ yn+++ + +  +ghft+l
  CCE26537.1  33 LASHNYFRGQHSANPLTWDTALAQSSQTWANTC----NFSHDSGGENLVYRTSFKYW-----------GEFVNMWGSERTQYNFDQPKFSAaTGHFTQL 116
                 567******************************....99999999999999999999...........******************************* PP

                 T-SS--EEEEEEEEBTTS-E.....EEEEEE CS
         CAP  99 lwpkstkvGcavatcgngsf...tfivvcny 126
                 +w++++ vGca+++c+ g+    +++vvc+y
  CCE26537.1 117 VWKNTKTVGCAWNYCSGGTGkavGYYVVCKY 147
                 *******************9*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1367.41
//
Query:       CCE26538.1  [L=890]
Description: uncharacterized protein CPUR_00006 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-40  136.6   0.0    2.8e-39  134.6   0.0    1.9  1  CoaE           Dephospho-CoA kinase
    4.4e-16   59.3   0.0    3.7e-06   26.8   0.0    3.7  2  Abhydrolase_1  alpha/beta hydrolase fold
    2.4e-08   34.0   0.0      9e-08   32.2   0.0    2.0  1  Abhydrolase_4  TAP-like protein
  ------ inclusion threshold ------
      0.042   13.1   0.2       0.11   11.7   0.2    1.6  1  SMN            Survival motor neuron protein (SMN)
      0.076   13.2   0.0       0.78    9.9   0.0    2.7  2  AAA_33         AAA domain


Domain annotation for each model (and alignments):
>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.0   7.9e-43   2.8e-39       1     165 [.     618     809 ..     618     827 .. 0.86

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 7.9e-43
                 EEEEEEESTTSSHHHHHHHHHH..TT-EEEEHHHHHHHTTCCTHHHHHHHHHHHG..........GGCB.TT...SS...E-HHHHHHHHHTSH....H CS
        CoaE   1 livgltGgiasGKstvanlfad..lgvpivDaDlvArqvvepgsealkkiveeFg..........eeilded...Ge...LdReaLrkkvFadp....e 77 
                 l++gltG ia+GKst+++l+++  +++p++DaD++Ar+vvepg++ + +iv++F            + +  +   G+   LdR aL+k+vF d      
  CCE26538.1 618 LVIGLTGSIATGKSTISSLLHSppHQLPVIDADVLARKVVEPGTAGYVAIVKHFApttpdllvppSDSMPPNgphGKgrpLDRPALGKRVFGDTpdlrR 716
                 69*******************999******************************97775555554222333323332336***********99622325 PP

                 HHHHHHHHHHHHHHHHHHHHHHH--S...SEEEEE-TTTTTTTGGGGSSEEEEEE-.-HHHHHHHHHHCC.TSTHHHHHHHHHHS--HHHHHH CS
        CoaE  78 ekkaLnallhPlirreikkelakles...kyvlldvPLLvEkqlekliervlvvdv.elelqveRlvard.gvseeevkaiiaaQlseeerla 165
                 ++++Ln+++hP++r+e+ k+l  ++      v++dvPLL+E++l++ + ++lvv+v +++ q++Rl++rd  +s++++++++++Q++   + a
  CCE26538.1 717 DRAVLNGIVHPAVRWEMLKALVGCYLrgcWAVVVDVPLLFESKLDRFCGTTLVVAVrDPDIQMRRLMERDaHLSKADAENRVKSQMDVRVKAA 809
                 799******************99888677899**********************9956899*********99**************9876655 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   5.8e-09   2.1e-05       2      68 ..      95     220 ..      94     224 .. 0.70
   2 !   26.8   0.0     1e-09   3.7e-06      74     243 ..     275     579 ..     270     583 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 5.8e-09
                    EEEEE-STTTCGGG.......GTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHH.................................... CS
  Abhydrolase_1   2 vlvilhGlpgssdv.......waerglapaLakdgfdvillDlrGvgySspapacinddy.................................... 54 
                    ++++++G+pg s+v        + +++ +   + +fdv+ +D rGv+ S+p+ +c    y                                    
     CCE26538.1  95 TVIVNPGGPGDSGVvhmlkngRYIQSMLDSPGR-RFDVLSFDTRGVALSTPRADC----Ytseaarraaewqargarpldgldmaalkralartta 185
                    79********99997777665444455544444.*********************....4333345555556666666666666666666666677 PP

                    .....................SHHHHHHHHHHHHH CS
  Abhydrolase_1  55 .....................gtasvaddldrild 68 
                                          tasva+d+ r++d
     CCE26538.1 186 hglqcagyreegiafnmheytATASVARDMLRLVD 220
                    77777777777777777777777777777777666 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1e-09
                    SEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE.CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH..... CS
  Abhydrolase_1  74 kltlvGhSmGGmialayaaeyperVkalvllga.idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf..... 163
                    +l + G S+G+ ++ a+++++p rVk+++l+g  ++++  l+++++ ++ ++   +  y   +   + + l +d+    ++ ++ vd l+      
     CCE26538.1 275 RLQYYGTSYGTVLGNAFLSMFPGRVKRMILDGVvVADNWVLGDWEESAVDTHHAINYFYKTCFQAGTRCALRNDSDSSWHSIQQRVDVLVArlded 370
                    56699*****************************99999999999999988877776666666666666666665555555555566677778889 PP

                    .............................HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC........................ CS
  Abhydrolase_1 164 .............................pdkskrfpssgsdnasslatgalksieqwpttdsaklllrlre........................ 206
                                                 p+ +    ss+ ++a+ + +++l++   +p  d+++ ++ +r+                        
     CCE26538.1 371 pvpgatvdgpevvidgsdildlmfgqlysPLDFFESLSSTLAQAVRGNYTQLLAELVPPMSDNDAMYDIDRNnasndtdsavdailraytwmaetf 466
                    999999999999999999999999999994444444444555555555555555555555555555555555555555555555555555555555 PP

                    ............................................................................THHHHS....EEEEEEETTC CS
  Abhydrolase_1 207 ............................................................................lknvla....ptlvisgtsD 222
                                                                                                     +    p l++s+ +D
     CCE26538.1 467 ssvacgdtpnlghyplshwqhklqklheryprlgvliaeqtlkcagwqshpkdrfagpfrspspppvpdshdddenD----SrpsaPLLLLSTLYD 558
                    55555555566666666666666666667777777777777777777777777777777778888887776655442....033448888888888 PP

                    SSSCHHHHHHHHHCHTSEEEE CS
  Abhydrolase_1 223 plvppkaledlaqllpkkrlv 243
                    p++p ++ +  a+  p++r++
     CCE26538.1 559 PITPLDSARAVARSHPQSRVL 579
                    888888888888887886554 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   2.5e-11     9e-08       5      70 ..     500     583 ..     496     590 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.5e-11
  Abhydrolase_4   5 gaalaesllsCagw..................pvspqrprdestakgaapvLllqnerDpaTPyegakklakalggavlvtveg 70 
                    g   ae++l+Cagw                  pv+  +  de+  + +ap Lll++ +Dp+TP+ +a+++a+  ++++++++++
     CCE26538.1 500 GVLIAEQTLKCAGWqshpkdrfagpfrspsppPVPDSHDDDENDSRPSAPLLLLSTLYDPITPLDSARAVARSHPQSRVLVQNS 583
                    666789999***************998876555555555555444447*******************************99986 PP

>> SMN  Survival motor neuron protein (SMN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   3.1e-05      0.11     112     227 ..     420     542 ..     412     545 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.1e-05
         SMN 112 eqnladllteasdede..dalkeanvnetesstdesdrss.......rsakakdksnleiakssqknlrfppvppptppglgrrgekldtlgpflsgwp 201
                  q la+l ++ sd+d   d  +++  n+t+s+ d   r++        s  + d+ nl   + s+++ ++        p lg    +         + p
  CCE26538.1 420 TQLLAELVPPMSDNDAmyDIDRNNASNDTDSAVDAILRAYtwmaetfSSVACGDTPNLGHYPLSHWQHKLQKLH-ERYPRLGVLIAEQTLKCAGWQSHP 517
                 588999*9999995542256667777888888888888777888887999******************999887.778889887776655666677778 PP

         SMN 202 pplpagpplipppppmspdageddea 227
                     agp   p ppp+ pd+ +dde 
  CCE26538.1 518 KDRFAGPFRSPSPPPV-PDSHDDDEN 542
                 8888998888888885.9******95 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.4       2.3   8.3e+03      54      70 ..     582     598 ..     564     615 .. 0.51
   2 ?    9.9   0.0   0.00022      0.78       3      89 ..     621     764 ..     618     806 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.3
      AAA_33  54 rlyqilnelarkalsag 70 
                 +  q++++ ++k +++g
  CCE26538.1 582 NSLQQQRKQLTKIQTQG 598
                 33333334444443333 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00022
      AAA_33   3 llvGlpGsGKstlaerllkklg.avllssdt...................................................lrrrlfgtdqqskt... 46 
                  l G  ++GKst +  l+ + +   +++ d+                                                   l +r+fg+ ++  +   
  CCE26538.1 621 GLTGSIATGKSTISSLLHSPPHqLPVIDADVlarkvvepgtagyvaivkhfapttpdllvppsdsmppngphgkgrpldrpaLGKRVFGDTPDL-Rrdr 718
                 5779999**********98888999******666666666666666666666666666666666666666666666666665555555522221.1112 PP

      AAA_33  47 ...dytrvldr......lyqilnelarkalsagrnvildatnlsrrerarfl 89 
                    +              +++l++l+  +l+  ++v++d ++l++++ +rf+
  CCE26538.1 719 avlN------GivhpavRWEMLKALVGCYLRGCWAVVVDVPLLFESKLDRFC 764
                 2111......111122255677777777777777777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 6009.22
//
Query:       CCE26539.1  [L=1027]
Description: related to serine/threonine kinase ARK1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-39  134.3   0.0    7.8e-39  133.6   0.0    1.3  1  Pkinase          Protein kinase domain
      1e-26   93.8   0.0    1.9e-26   92.9   0.0    1.4  1  Pkinase_Tyr      Protein tyrosine kinase
  ------ inclusion threshold ------
      0.027   13.8   0.0      0.044   13.1   0.0    1.3  1  Kinase-like      Kinase-like
      0.064   13.6   1.4       0.37   11.1   0.1    3.1  2  Thyroglob_assoc  Thyroglobulin_1 repeat associated disordered
        0.1   12.5   0.0        1.7    8.5   0.0    2.2  2  APH              Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   2.2e-42   7.8e-39       5     259 ..      47     313 ..      43     316 .. 0.88

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 2.2e-42
                 EEEEEESSEEEEEEEET...TTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHH..HH CS
     Pkinase   5 eklGeGsfGkVykavek...etgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee.....kdelylvleyveggeladlle..rk 92 
                 + l eG+f+ Vy ++ +   + ++  ++K++++ ++++ +   +++E++ +k+lk h+ iv+++++  +       e++l++e+++gg l d+++   +
  CCE26539.1  47 KYLSEGGFAHVYLVKLSspiDGNDSAVLKRVAVPDKESLRG--MRTEVETMKRLKgHRPIVTYIDSHASelkngGYEVFLLMEFCDGGGLIDFMNtrLQ 143
                 56779******99987522267889999*****99998775..***********************999999888999****************96434 PP

                 SS--HHHHHHHHHHHHHHHHHHHHTT..EE-SS-SGGGEEEETTTE...EEE-SGTTSEESSSSCS..........BCTTTSCGGGS-HHHH...TTSC CS
     Pkinase  93 gslseeeakkiakqilegleylHskg..iiHrDlKpeNiLidekge...lKitDFGlakelesssk..........ltsfvgtseYlAPEvl...kene 173
                   l+e e+ +i++ ++eg++ +H  +  ++HrDlK eN+Li  +g    +K++DFG  +  +   +            +   t +Y+APE++   ++++
  CCE26539.1 144 HRLTEPEILHIFADVAEGVACMHYLKppLLHRDLKVENVLIVGHGSskrFKVCDFGSTAPPRPAPTtvvecrlmdeDIQKHTTLQYRAPEMVdvyRKQP 242
                 55*********************77767**************7777788********9999988889999999877556789***********9999** PP

                 BSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 174 yskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeell 259
                   +k+D+W+lGv ly+l + ++pf+   ++   +  +++           ++k+p++ ++s+ +k+l+ ++l++d+++R+ + ++l
  CCE26539.1 243 LNEKSDIWALGVFLYKLCYYTTPFE---DQG--QLAIMN----------ASFKYPHHPTFSDRLKKLIGSMLREDMQSRPNIYQVL 313
                 *************************...222..233444..........4799****************************99886 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   5.4e-30   1.9e-26       2     255 ..      44     312 ..      43     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 5.4e-30
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE...SSSS....EEEEEE--TTEBHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct...keep....llivteyvkgGdLlkf 91 
                   ++k l eG f++V+  +l+ +  + + + ++K +     +e+ + + +e+++mk+l  h+ iv ++       k  +    +++++e+++gG L +f
   CCE26539.1  44 VIQKYLSEGGFAHVYLVKLS-SPIDGNDSAVLKRVAVPD-KESLRGMRTEVETMKRLkGHRPIVTYIDSHAselK--NggyeVFLLMEFCDGGGLIDF 137
                  57899***************.677777777889995554.55599************99*******998885552..134569*************** PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEE.......EETTSSTSGGGGS-HHHH CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLeskk..lvHrdlaarNvLlse...nkvvkisDfGLardiekddey.......vkkeeaklpvkWmapEsl 177
                  ++++ +++lt  ++l++ ++vA+G++ ++  k  l+Hrdl   NvL+     +k  k++DfG +       ++        ++ ++++ +++ apE++
   CCE26539.1 138 MNTRLQHRLTEPEILHIFADVAEGVACMHYLKppLLHRDLKVENVLIVGhgsSKRFKVCDFGSTAPPRPAPTTvvecrlmDEDIQKHTTLQYRAPEMV 235
                  ***********************966555443339***********985444899*******987655444443333333666788899*******99 PP

                  HHSE...EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 178 kekk...ftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfsel 255
                  +  +   +++ksD+W+ Gv+l+ ++    +p+++  +  +   ++++ + ++  + +++l++l+ + ++ed+++Rp++ ++
   CCE26539.1 236 DVYRkqpLNEKSDIWALGVFLYKLCY-YTTPFEDQGQLAI---MNASFKYPHHPTFSDRLKKLIGSMLREDMQSRPNIYQV 312
                  8766677*****************99.5688887766655...5667788888899********************99887 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.2e-05     0.044     230     288 .]     246     306 ..     228     306 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
  Kinase-like 230 kldaWqlGlviyriwclklPltlateea..keewkfklckkipekvkaLlkkfLqlsqedR 288
                  k d W+lG+  y +   + P++ + ++a  + ++k+ +    ++ +k L+  +L+ + + R
   CCE26539.1 246 KSDIWALGVFLYKLCYYTTPFEDQGQLAimNASFKYPHHPTFSDRLKKLIGSMLREDMQSR 306
                  78*******************99988761155677888889**************998877 PP

>> Thyroglob_assoc  Thyroglobulin_1 repeat associated disordered domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1    0.0001      0.37      10      44 ..     392     430 ..     388     435 .. 0.75
   2 ?   -3.8   0.1       4.6   1.7e+04      19      39 ..     964     984 ..     944     984 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
  Thyroglob_assoc  10 qregsGK..dDgs..kptptmetqPqvdeeeitsqyPtL 44 
                      ++++s +  +Dg+  ++  + + q  +d +ei+s+yPtL
       CCE26539.1 392 KQDSSARkvTDGDpfAALDSANAQKMADADEISSRYPTL 430
                      45666667866662234457789***************9 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.6
  Thyroglob_assoc  19 gskptptmetqPqvdeeeits 39 
                      g+ p+  +  +P +++e++++
       CCE26539.1 964 GARPVSPVKQNPATQPEQLIA 984
                      777777888889999998765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00047       1.7      12     109 ..      56     169 ..      47     176 .. 0.74
   2 ?    2.2   0.0      0.04   1.4e+02     168     181 ..     172     185 ..     163     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00047
                 EEEEEEETT.-....-EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE..EEEEEE----EE-SS........HHHHHHHHH CS
         APH  12 rtylvttpa.g....ryvlrrnppa..raaeeirrevallrlLakagvpvPevlagdtddeeigl..lfalieyvpgrsllr........klsaaqlpe 93 
                 ++ylv+ ++      + vl+r++ +  ++ + +r ev+ ++ L ++  p+   ++   ++  +g   +f+l+e+++g  l +        +l+++++ +
  CCE26539.1  56 HVYLVKLSSpIdgndSAVLKRVAVPdkESLRGMRTEVETMKRLKGH-RPIVTYIDSHASELKNGGyeVFLLMEFCDGGGLIDfmntrlqhRLTEPEILH 153
                 5666664332123459999997766669999999************.55777777553333333356***********999999998888888888888 PP

                 HHHHHHHHHCCHHCH. CS
         APH  94 llealgeflaalhqvd 109
                 ++++++e  a +h + 
  CCE26539.1 154 IFADVAEGVACMHYLK 169
                 8888888888888665 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.04
                 EE-SS-SGGGEEEC CS
         APH 168 llHgDlhpgNllvd 181
                 llH+Dl+  N+l+ 
  CCE26539.1 172 LLHRDLKVENVLIV 185
                 89**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1027 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 7413.93
//
Query:       CCE26540.1  [L=563]
Description: related to MAK11 protein (maintenance of killer toxin-encoding satellite M1 dsRNA) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-08   34.8   0.0          2    9.4   0.0    6.2  7  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.57    9.8   8.8       0.96    9.0   8.8    1.3  1  FAM220    FAM220 family


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.98   8.8e+03      25      34 ..     111     120 ..     105     121 .. 0.77
   2 !    7.2   0.0    0.0011       9.9       7      37 ..     142     182 ..     138     183 .. 0.69
   3 !    9.4   0.0   0.00022         2       4      36 ..     214     246 ..     211     247 .. 0.83
   4 !    5.3   0.0    0.0044        39       7      38 .]     276     309 ..     272     309 .. 0.83
   5 ?   -3.3   0.0         2   1.8e+04      15      35 ..     398     410 ..     384     412 .. 0.74
   6 ?    3.3   0.0     0.019   1.7e+02      24      37 ..     472     485 ..     456     485 .. 0.82
   7 ?   -0.5   0.0       0.3   2.7e+03       2      17 ..     513     528 ..     512     539 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.98
                 EEEEETTSEE CS
        WD40  25 lasGsdDgtv 34 
                 +++Gs+D+ +
  CCE26540.1 111 IIAGSYDHVL 120
                 567*999976 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0011
                 EESS.SSEEEEE.....EETTSSE........EEEEETTSEEEEE CS
        WD40   7 ltGH.ssvtsla.....fspdgaw........lasGsdDgtvriW 37 
                 + +H s ++++a          +         lasGs D  + i+
  CCE26540.1 142 FNAHsSAIRCVAvspptA----PVsgqmqkvlLASGSTDERINIY 182
                 679*666****9744441....33555577768899999888887 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00022
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 l+tl  H   vt+l+f+  +++l ++s+D t+ +
  CCE26540.1 214 LGTLLHHtATVTALRFPTRSKLL-TASEDSTISV 246
                 6778788666************8.6899***975 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0044
                 EESS.SSEEEEEEETTSSEEEEE..ETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasG..sdDgtvriWd 38 
                 + G  s+v+++a +p+ ++++s   +  +  r+W+
  CCE26540.1 276 FGGTpSGVNDFAIHPSMKLMISVgkG-ERCMRLWN 309
                 6788788************9865255.*******8 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 2
                 EEEEETTSSEEEEEETTSEEE CS
        WD40  15 slafspdgawlasGsdDgtvr 35 
                 s+        la +++Dg v 
  CCE26540.1 398 SI--------LAVATEDGRVI 410
                 34........78888899885 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.019
                 EEE.EEETTSEEEEE CS
        WD40  24 wla.sGsdDgtvriW 37 
                 +l+ +Gs  g++r+W
  CCE26540.1 472 YLVgAGS-EGSIRVW 485
                 4665678.******* PP

  == domain 7  score: -0.5 bits;  conditional E-value: 0.3
                 EEEEEEESSSSEEEEE CS
        WD40   2 qclrtltGHssvtsla 17 
                 ++l+++++++ +t+la
  CCE26540.1 513 RLLGSCETQNRITCLA 528
                 67888888889****6 PP

>> FAM220  FAM220 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   8.8   0.00011      0.96      30     132 ..      21     126 ..       6     130 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00011
      FAM220  30 ttklkkrsqkesvspsdapswtaqsvldsnkrsrakeakslekksalskasllkhskkkvlPplkessrrssasasssskavslssapk.........k 119
                 t      s+k+s+ p+++ + t+ + l+s+k+++++e++s++k     kas l+  k + + p+k++++++s++++  + + s   + k          
  CCE26540.1  21 T--KGSASEKSSSKPVESIQTTKPKSLASGKSTKSAESASVKKT----KASALDNTKSAESAPVKKTKTPTSEKKAKPAAPLSGGDISKletetlqiiA 113
                 2..33456788888888889999999****99988888885554....5889*************************9999998555555434444446 PP

      FAM220 120 enfdsvlcyidea 132
                    d+vl+++++ 
  CCE26540.1 114 GSYDHVLHGLTAQ 126
                 6666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.40
# Mc/sec: 4256.47
//
Query:       CCE26541.1  [L=850]
Description: uncharacterized protein CPUR_00009 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0025   18.0  10.9     0.0042   17.2  10.9    1.3  1  Cytochrom_B561   Eukaryotic cytochrome b561
  ------ inclusion threshold ------
      0.011   15.4   0.1      0.011   15.4   0.1    3.1  3  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l
       0.19   11.5   5.2        0.4   10.5   5.2    1.4  1  DUF2427          Domain of unknown function (DUF2427)
       0.24   10.2   7.5       0.38    9.5   7.5    1.2  1  Herpes_UL17      Herpesvirus UL17 protein


Domain annotation for each model (and alignments):
>> Cytochrom_B561  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2  10.9   9.3e-07    0.0042       2     130 ..      70     189 ..      69     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 9.3e-07
                     HHHHHHHHHTHHHHHHHTHHHHS-S...-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SS-SHHHHHHHHHHHHHHHHHHHHHHHHTS CS
  Cytochrom_B561   2 HpvlmviGfvllmgeaiLvyrvsstrklskktkkllHlilqllalilavvgllavfksknekeianlyslHswlGlvtvilfllqlvlGfvlfll 96 
                     H+v+  + f+l++  a+++ r    ++ +  +  + H+ l++l+++l ++ +++ f        + l++ H  +G++ ++lf+lqlv G ++   
      CCE26541.1  70 HAVMAALVFLLFVPMAVMLARF---YSREPGYAIVYHAQLHVLSGLLLLAVFILGFFAVG--PERSLTNPHHGIGVAIFVLFILQLVGGRLVRH- 158
                     999***************9997...45577788888999998888776665555444333..4578999999*****************87666. PP

                     S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cytochrom_B561  97 pklskklralllplHvllGlvifvlaivtallGl 130
                       +sk lr+l   +H+++G +i +l+iv++ lGl
      CCE26541.1 159 --ISK-LRSLRIMIHQWSGRAIALLGIVQVPLGL 189
                     ..444.78899999******************98 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.7   7.5e+03      30      30 ..     338     338 ..     319     359 .. 0.52
   2 ?   15.4   0.1   2.6e-06     0.011      43      75 ..     467     500 ..     461     501 .. 0.84
   3 ?   -2.8   2.0       1.2   5.4e+03      53      73 ..     731     751 ..     730     754 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.7
  Phage_holin_2_4  30 a 30 
                      a
       CCE26541.1 338 A 338
                      1 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.6e-06
  Phage_holin_2_4  43 AliGlL.vnWyYkreanRRaaaehelreeerqlr 75 
                       ++G L + W+ k+ a+RRa +e e+ +ee+++r
       CCE26541.1 467 GIMGGLgIAWFNKKLAERRARKEEERLREEEDMR 500
                      5555444************************998 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.2
  Phage_holin_2_4  53 YkreanRRaaaehelreeerq 73 
                      Y+r+   R a   + r+ e++
       CCE26541.1 731 YRRDSGQRRAERSAERQAEED 751
                      888877666666666666655 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.2   8.8e-05       0.4       9      99 ..      58     153 ..      52     158 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.8e-05
     DUF2427   9 ttdephksalwvHiilmtlalvvvyPvalvLslaksrwylpvqivnl.vlavlglllghi....ykgstPelypnniyaklswillillavqvvla 99 
                 +t  ++++++++H+++ +l++++  P+a++L+   sr    + + +  + ++ glll+++    + +  Pe    n ++ +++ +++l ++q+v +
  CCE26541.1  58 ATLPQYHRIVLAHAVMAALVFLLFVPMAVMLARFYSREPGYAIVYHAqLHVLSGLLLLAVfilgFFAVGPERSLTNPHHGIGVAIFVLFILQLVGG 153
                 45555788999*********************9998854333333330334445555555112234566998889**************9999865 PP

>> Herpes_UL17  Herpesvirus UL17 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.5   8.6e-05      0.38     194     296 ..     645     762 ..     598     782 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 8.6e-05
  Herpes_UL17 194 deaaaearlkddfdeilslikraaeavnkraPv...............aavasgllqgal....asllagrresaahlgaLEpPgkvRGrekgarrsr 272
                  + aaa+a++     +i ++ +   +  ++ +Pv                + ++++  +a+    + + ++r++s+  l++LE P+ +RG+++    +r
   CCE26541.1 645 ERAAAAAAVR--AGQIAASER-DHHGSHTSRPVsvkvkmhegrdknvtLRRLTDDEARATrgppTGRGRSRADSESSLSGLESPSHGRGYRRDSG-QR 738
                  4444444443..334444333.334444455777776666666665555555555555558999**************************87643.45 PP

  Herpes_UL17 273 aprspeelldaasaalaggdtpad 296
                  +++++ e  +  + +la+ ++p  
   CCE26541.1 739 RAERSAERQAEEDDQLAPLSPPHP 762
                  555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5644.74
//
Query:       CCE26542.1  [L=134]
Description: uncharacterized protein CPUR_00010 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1062.76
//
Query:       CCE26543.1  [L=1079]
Description: related to phosphatidylinositol-glycan biosynthesis, class O protein (PIG-O) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-15   57.5   0.0    3.5e-15   56.5   0.0    1.5  1  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos
    0.00049   19.6   0.0    0.00088   18.8   0.0    1.5  1  Sulfatase      Sulfatase
     0.0029   17.0   0.1     0.0052   16.2   0.1    1.3  1  Metalloenzyme  Metalloenzyme superfamily
  ------ inclusion threshold ------
        0.6    9.9   7.7       0.94    9.2   7.7    1.3  1  TraF           F plasmid transfer operon protein


Domain annotation for each model (and alignments):
>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   7.7e-19   3.5e-15     147     237 ..     280     360 ..     196     405 .. 0.78

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 7.7e-19
                   HHHHHHHHHHHHCHTHSHHHHHCTSSESEEEEEECCCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEE CS
  Phosphodiest 147 kvdkavlqtwldaafakvvlekelekpdlllvyleetDtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHGmadv 237
                   +vd+ v+++ + + +ak     + +++dll+++  ++D++gH++Gpd+p+++++lr+ D++i +L + +d++     t +++++DHGm d 
    CCE26543.1 280 TVDNGVMDNIFPLMEAK-----ARGQWDLLIGHCLGVDHAGHRYGPDHPAMNAKLRQMDDFIRRLTATIDDK-----TLLVVMGDHGMDDR 360
                   45545666665555554.....229***********************************************.....***********986 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     2e-07   0.00088     209     309 .]     320     418 ..     146     418 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC...EEECSEEEGGGHHHHHH CS
   Sulfatase 209 qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekap...rvseelvshiDlfptil 304
                   + a  + ++++Dd+i r+ a++     +d+tl+v+++Dhg    ++ g   + + ++a +   + P + + +   a      +  +v++iDl+pt+ 
  CCE26543.1 320 PDHPAMNAKLRQMDDFIRRLTATI-----DDKTLLVVMGDHGMDDRGDHGGESDDEIEAALWMYSKAPIFGRTSPAYAVppaNAKIRPVNQIDLVPTLS 413
                 6677778899**************.....*************977664444444444466777778999999999888899999999999*******99 PP

                 HHTTE CS
   Sulfatase 305 dlagi 309
                  l+gi
  CCE26543.1 414 LLLGI 418
                 88886 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.2e-06    0.0052     125     189 ..     294     359 ..     258     367 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.2e-06
                    HHH.CC.-SEEEEEE-HHHHHHHTT..-HHHHHHHHHHHHHHHHHHHTTS-TTTEEEEEE-SSB--T CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 125 dailsgkfdlvvvniknaDmvGHtg..dleatiaaieaaDeavkeildaieqvdgilvvtADHgnae 189
                    +a   g+ dl++ +    D +GH+   d  a  a + ++D  + +++ +i+++  +lvv++DHg ++
     CCE26543.1 294 EAKARGQWDLLIGHCLGVDHAGHRYgpDHPAMNAKLRQMDDFIRRLTATIDDKT-LLVVMGDHGMDD 359
                    4555678999999**********963366789999**************99998.*********886 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   7.7   0.00021      0.94      13      80 ..       6      73 ..       1      84 [. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00021
        TraF 13 eekkekakppkaakpalkeptseesatesaaelrkeleelldkAilnPteenveaylrlqrvaldkas 80
                ++ k++a+ p++a+pa+   ++++ a++  a+  +  +++++kA+ +Pte +++++l+lqr +l++ +
  CCE26543.1  6 PKSKAQAASPPPAQPAPPLDYKAVAAQWAKAKRIQAANDAEAKALGQPTERDAAKALELQREQLNQLR 73
                345555555555666655567777777777777788999***********************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1079 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.25s 00:00:01.05 Elapsed: 00:00:00.42
# Mc/sec: 7683.96
//
Query:       CCE26544.1  [L=302]
Description: uncharacterized protein CPUR_00012 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0043   16.6   0.0     0.0064   16.1   0.0    1.2  1  MaoC_dehydratas  MaoC like domain


Domain annotation for each model (and alignments):
>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.6e-07    0.0064      13      66 ..     192     246 ..     181     268 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.6e-07
                      EEEEEEEHHHHHHHHHHHT---GGGT-HH.HHHHTTTSSSB--HHHHHHHHHHHH CS
  MaoC_dehydratas  13 ekeitvteadialyalvsgDlnpiHvdpe.fAkkagfggpIahGmltlaivaklv 66 
                      + + t +++    + +++++   iH+dp    ++ + +g  +hG ltla++ + +
       CCE26544.1 192 SSTATPSPKHLFFFSALTFNAHSIHIDPLyTRSVERHRGLLVHGPLTLALMLREL 246
                      4455556899999****************566677888************98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2257.23
//
Query:       CCE26545.1  [L=524]
Description: related to cyclopropane-fatty-acyl-phospholipid synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-63  213.9   0.0    3.3e-63  213.6   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
    2.1e-11   44.0   0.0    3.8e-11   43.1   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
      4e-11   43.4   0.0    8.8e-11   42.3   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
      4e-10   40.3   0.0    9.1e-10   39.1   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    0.00085   20.0   0.0     0.0021   18.8   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.023   14.5   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
      0.023   14.5   0.0      0.036   13.8   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.026   14.5   0.0      0.072   13.1   0.0    1.7  2  Methyltransf_32  Methyltransferase domain
      0.089   12.3   0.0       0.16   11.5   0.0    1.3  1  MTS              Methyltransferase small domain
        0.2   11.7   0.0       0.37   10.9   0.0    1.4  1  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.6   0.0   1.8e-66   3.3e-63       2     273 .]     198     475 ..     197     475 .. 0.93

  Alignments for each domain:
  == domain 1  score: 213.6 bits;  conditional E-value: 1.8e-66
                 XSXXXHHHHHHHHTS-HHHHCTTS-TT---S----SS..TT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHH CS
        CMAS   2 kkkkevenikahYDlsndffalfldptmtYsCAyfer..ddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqa 98 
                  ++++ e+++ hYD ++df+ +fl+p m Y+  + ++  +++tLe+ q +Kl +++ek++lk G+++LdiGcGWG+l+r a e+y+++v g+Tl ++q+
  CCE26545.1 198 TRSQDEEQVRDHYDRGDDFYGWFLGPRMIYTSGVISDinKEETLEQLQDNKLAIVCEKIGLKSGERMLDIGCGWGTLARFASENYGAHVTGITLGRNQT 296
                 577999*****************************9877899********************************************************* PP

                 HHHHHHHHTS-S.SS-EEEEES-GGG---...--SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS CS
        CMAS  99 klakkrvdeldl.erkvevklldyedlde...kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkelaerglklkfidkeiFPgG 193
                 ++ + ++ ++++ e++ +++ +dy+d++     ++++  +++ ehvg++++ +f  +++++l +dG++ l+    +++ + +   +   f++k+iFPg 
  CCE26545.1 297 AWGNSAMRKVGVtEEQSKILCMDYRDIPVpegLYNKITCLEMAEHVGVRHFSRFLTQVYDMLDDDGVFFLQIAGLRKPWQYE-DLVWGLFMNKYIFPGA 394
                 ***********7256789********9865568*************************************977666666555.555669********99 PP

                 ---B.HHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHHSHHHHHHHHHHHHHHHHHHHHTTSCEEEEE CS
        CMAS 194 elps.ieeieeeiseagftvvdveslrahYakTLkaWaealqenkdeaialvseevarmyelYLagcaeaFrkgyidvaql 273
                    + +  ++++ + agf++++v+ ++ hY  TL  W+ +   n++++ a ++++ +r++e++La +    r+g + ++q+
  CCE26545.1 395 DASTpLGFVIDKLEGAGFEIKNVDTIGVHYSATLWRWYRNWIGNREKVEAKYGKRWYRIWEYFLASSTIVSRQGGATCFQI 475
                 7654278999**************************************************************999999986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   2.1e-14   3.8e-11       9     126 ..     244     375 ..     236     394 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 2.1e-14
  Methyltransf_23   9 lsdklerll.pk..lraggrvLdiGcGtGillevlren.gfsvtgvDlspeaveiae........kakkaqkdqfdeqeaaepqgkfdlIvlre 90 
                      l+d+ + ++ +k  l++g r LdiGcG G+l++ ++en g++vtg+ l +++ ++          +  +++  ++d  ++++p+g ++ I++ e
       CCE26545.1 244 LQDNKLAIVcEKigLKSGERMLDIGCGWGTLARFASENyGAHVTGITLGRNQTAWGNsamrkvgvTEEQSKILCMDYRDIPVPEGLYNKITCLE 337
                      4555554443334588999****************777699********999999767777777777777777777779999************ PP

  Methyltransf_23  91 vlehvp..dppellrqiatllkpgGylllseplaslke 126
                      + ehv   ++ + l+q++++l ++G+++l+  + + ++
       CCE26545.1 338 MAEHVGvrHFSRFLTQVYDMLDDDGVFFLQIAGLRKPW 375
                      ****99778********************998766555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   4.9e-14   8.8e-11       1      95 [.     265     365 ..     265     366 .. 0.96

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 4.9e-14
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl...kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvL 88 
                      Ld+GcG G la+   +++ a+v+g+ l  +++++ +++ ++ g+   + +++++d +++p++++ +  +++ e+ +hv     +++l +++ +L
       CCE26545.1 265 LDIGCGWGTLARFASENYgAHVTGITLGRNQTAWGNSAMRKVGVteeQSKILCMDYRDIPVPEGLYNKITCLEMAEHVgvRHFSRFLTQVYDML 358
                      8**************7777***************999999999999999******************************999************ PP

                      EEEEEEE CS
  Methyltransf_11  89 kpgGllv 95 
                        +G+++
       CCE26545.1 359 DDDGVFF 365
                      ****998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   5.1e-13   9.1e-10       2      97 .]     265     362 ..     264     362 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 5.1e-13
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl...nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      Ld+GcG G+l++ +++++g a+vtg+ +  ++ +  ++ +++ g+   + +++++d +d+p ++g ++ +++  + +h+  ++  ++l +++++
       CCE26545.1 265 LDIGCGWGTLARFASENYG-AHVTGITLGRNQTAWGNSAMRKVGVteeQSKILCMDYRDIPVPEGLYNKITCLEMAEHVGVRHFSRFLTQVYDM 357
                      9****************98.*****************99999888888************************888******************* PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      L ++G
       CCE26545.1 358 LDDDG 362
                      *9998 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.2e-06    0.0021       1      99 []     265     364 ..     265     364 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.2e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsai....edakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldn 88 
                      L+iGcG G+l+r   e+  ++++tg+ + +++      + ++    +e+ +  +++++++ + +    + +  +++++  +h+  ++  ++l +
       CCE26545.1 265 LDIGCGWGTLARFASEN-YGAHVTGITLGRNQTawgnSAMRKVGVTEEQSKILCMDYRDIPVPE----GLYNKITCLEMAEHVgvRHFSRFLTQ 353
                      8*******999999888.9*************96652222333333444445555555555443....49*************999999***** PP

  Methyltransf_12  89 irklLkpgGrl 99 
                      ++++L ++G++
       CCE26545.1 354 VYDMLDDDGVF 364
                      *********86 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.3e-05     0.023       2      35 ..     259     290 ..     258     374 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiD 35 
                      ++g r+lD+GCG G+l+  + e  + +a+v+Gi 
       CCE26545.1 259 KSGERMLDIGCGWGTLARFASE--NYGAHVTGIT 290
                      7899**************9995..4579999995 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     2e-05     0.036      61     102 ..     248     289 ..     224     321 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
                 HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEE CS
        PCMT  61 mvalalellelkkgarvLevGsGsGyltavlarlvgekgrvv 102
                   a+++e + lk g+r+L++G+G G l+   ++  g++ + +
  CCE26545.1 248 KLAIVCEKIGLKSGERMLDIGCGWGTLARFASENYGAHVTGI 289
                 57999********************99988887777666555 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     4e-05     0.072      25      80 ..     260     310 ..     243     349 .. 0.82
   2 ?   -2.5   0.0       2.5   4.4e+03      46      79 ..     479     511 ..     473     520 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4e-05
  Methyltransf_32  25 galtvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnk 80 
                      + ++++D+G+G g L++  +    +y+ +v+gi + ++ ++  +   +k+g  +++
       CCE26545.1 260 SGERMLDIGCGWGTLARFASE---NYGAHVTGITLGRNQTAWGNSAMRKVG--VTE 310
                      467899***************...9**********9999999999999998..433 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.5
  Methyltransf_32  46 kekeyklkvvgidakeelvekaekraeklgkkfn 79 
                      k+ +  ++v gid++  l+++ ++ +  l+ +++
       CCE26545.1 479 KNINSTHRVEGIDSQFGLSAALKNFKGDLK-AWE 511
                      456678999999999888888888877777.664 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.8e-05      0.16      30      54 ..     259     283 ..     245     317 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.8e-05
                 CTCSEEEEET-TTSHHHHHHHHHTT CS
         MTS  30 elsgkvlDlGcGaGvlgaalakesp 54 
                 +  +++lD+GcG+G l+  + +++ 
  CCE26545.1 259 KSGERMLDIGCGWGTLARFASENYG 283
                 467789**********988776654 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00021      0.37       8      72 ..     248     310 ..     247     363 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
                 HHHHHHHHHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHHTTEEEE.CS-CCC CS
        FtsJ   8 KLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvtti.qgditd 72 
                 KL+ + ek + +k g++++D+g++ G  + +++++ g  ++v +++l+ ++   g + + +  +t+
  CCE26545.1 248 KLAIVCEKIG-LKSGERMLDIGCGWGTLARFASENYG--AHVTGITLGRNQTAWGNSAMrKVGVTE 310
                 7888889999.99**********************86..69******9986553333333444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3795.51
//
Query:       CCE26546.1  [L=236]
Description: uncharacterized protein CPUR_00014 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-52  178.4   0.1    1.9e-52  178.2   0.1    1.0  1  NPP1      Necrosis inducing protein (NPP1)


Domain annotation for each model (and alignments):
>> NPP1  Necrosis inducing protein (NPP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.2   0.1   1.1e-56   1.9e-52       4     193 ..      41     230 ..      38     233 .. 0.92

  Alignments for each domain:
  == domain 1  score: 178.2 bits;  conditional E-value: 1.1e-56
        NPP1   4 alkfqPvldi..kdgCypypAvdadGelsgGlkptgsesggCrdssrksqvYaRsrcsnggwaimYayYfpkdqaakssghrHdWenvvVwidndakee 100
                  ++fqP+++     gC pypAvd+dG++sgGlkp+g+esg+Cr+s   +qvY+R ++++g+++imY ++ pkd++  ++ghr++We +v+w++n++  +
  CCE26546.1  41 MKRFQPYFNNegGGGCWPYPAVDSDGNWSGGLKPSGKESGDCRNSV--GQVYVRGAWYKGRYGIMYTWFAPKDETGVGGGHRYEWEGAVIWVNNPNVPD 137
                 689******987889*****************************96..9************************************************** PP

        NPP1 101 skvlgvsasahgkykkkt.kastvrlegshvkivyhkdga..gthalrfaeakdgetqpLvsweqlpdaardaLnnadfgsaakvplkDanfeenL 193
                 +k++g ++sah+++k++t  a +v++ + h+ ++y+ d a  gth++  + +k g  qp v+weqlp+ ar+aL+++d+g+a+   +    f ++L
  CCE26546.1 138 AKMVGGAVSAHHGWKTTTnIAGDVSFYQGHPLCKYYVDTAvfGTHRIGWT-DKVGGLQPAVAWEQLPAPARNALLSTDWGHAT--FMLGYGFLDHL 230
                 *****************99999**************9998899*******.77777************************865..44445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1668.16
//
Query:       CCE26547.1  [L=354]
Description: uncharacterized protein CPUR_00015 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-50  169.5   0.0    1.1e-49  169.1   0.0    1.1  1  Abhydrolase_3  alpha/beta hydrolase fold
    1.5e-13   50.4   0.2    1.5e-12   47.2   0.2    2.1  1  COesterase     Carboxylesterase family
    0.00081   20.1   1.8     0.0012   19.4   1.8    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   0.0   1.9e-53   1.1e-49       2     209 ..      93     315 ..      92     317 .. 0.88

  Alignments for each domain:
  == domain 1  score: 169.1 bits;  conditional E-value: 1.9e-53
                    EEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT- CS
  Abhydrolase_3   2 vyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardege 97 
                    +y+HGGGf++gsldt+da+c++++ ++ +vv+ v+Yr  Peh +P+a +da + + wl+++   lg +p+++v++G SaG++l+a ++l     + 
     CCE26547.1  93 LYLHGGGFLTGSLDTDDATCSQICTRASVVVLHVNYRHTPEHVYPTAWDDAEDGFAWLHQNIGLLGGHPDKVVVGGISAGAQLTASLVLGKTMGKV 188
                    9************************************************************88************************965555432 PP

                    --....EEEEEEESE........-SST..SSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSS.GGGGGSTTTSGGGC..S-SST---EEEEEETT CS
  Abhydrolase_3  98 pk....vagqvliyP........vtdl..ertesesikkaeeladgplltraaldlfwrlylp.eadrddplasplla..edlsglpptlvvvaef 176
                    ++    +agqvl+ P              ++ + ++  + ++ +d+p+l++++++ f +l  +   d +d ++sp  a  e ++g+ppt+  va+ 
     CCE26547.1 189 LSeypaIAGQVLMIPclvhldayE--SqlAKLKDPALSSYKQCQDAPILSAKSIRVFSDLLQSgTPDPSDLRMSPGNAsvEHVRGMPPTTFGVAGV 282
                    225666*********998666541..14544444444444677*******************7799**********995446************** PP

                    -TTHHHHHHHHHHHHHTT--EEEEEETTEETTG CS
  Abhydrolase_3 177 DplrdegeayaerlraagvevelieyegmvHgf 209
                    Dplrde+  y+e l++agv++++ ++eg++H+f
     CCE26547.1 283 DPLRDEALLYSELLAEAGVPTDTYVFEGVPHAF 315
                    ********************************9 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.2   2.6e-16   1.5e-12      93     205 ..      78     182 ..      77     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 2.6e-16
                 EEESSSSSTTSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEE CS
  COesterase  93 ytPkekkeakkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdpervtl 189
                 y P ++   + +lPV+ ++hGggf tgs  +  + +s+++++ +v+v  +nYR  +       +   p   +  D    + W+++nI   GG p++v +
  CCE26547.1  78 YRPVSA-ADEDRLPVFLYLHGGGFLTGSLDTddATCSQICTRASVVVLHVNYRHTP-------EHVYPT--AWDDAEDGFAWLHQNIGLLGGHPDKVVV 166
                 667765.455666***************97777********************644.......555553..56799999******************** PP

                 EEETHHHHHHHHHHHS CS
  COesterase 190 fGesAGaasvslllls 205
                  G sAGa + + l+l 
  CCE26547.1 167 GGISAGAQLTASLVLG 182
                 ********99999885 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   1.8   2.1e-07    0.0012       2     207 ..      93     313 ..      91     339 .. 0.52

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.1e-07
                    EEE--GC.....GCHHHH..HHHHCCT......CEEEEE--TTSTS-GGCS--HHHCHHH.HHHHCCTT.....TTSEEEEEETCHHHHHHHHHHC CS
  Abhydrolase_6   2 lllHGagssassWlvapL..aallaag......vhvlapDlpGhGrsdpppldledladl.aalldelaa...gggpvvlvGHSlGGalalaaapl 85 
                    l lHG+g     +l+++L    + +++      v vl++ ++++ + +  p++++d++d  a l + ++     +++vv+ G S G+ l +    l
     CCE26547.1  93 LYLHGGG-----FLTGSLdtDDATCSQictrasVVVLHVNYRHT-PEHVYPTAWDDAEDGfAWLHQNIGLlggHPDKVVVGGISAGAQLTAS---L 179
                    568**99.....8888887744445555665677889****999.368888***997777888888888788889999********995555...2 PP

                    C...............EE.EEES-.........................................----TTTS----TTHHHHHHTT-CCCCHCCH CS
  Abhydrolase_6  86 a.............lvvg.vlldp.......................................pptalpagllaaalelllallallrllawlsre 128
                                   ++g vl+ p                                                                        
     CCE26547.1 180 VlgktmgkvlseypAIAGqVLMIPclvhldayesqlaklkdpalssykqcqdapilsaksirvF-------------------------------- 243
                    2222334433333355556666664444444444444444333333333333322222222220................................ PP

                    S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGC.EEECTT-C......HHHHCHHCCCHSTTEEETCE...SSS CS
  Abhydrolase_6 129 plprlfladedadaawrarlarlaallaglgllpaaawadlpvpl.lvlggeDp......lvprllerllaqagarlpvvlpgaGH 207
                           +        +    ++++l++++g  ++++++++p+++  v +g Dp      l+ +ll+++++ +  +   v++g  H
     CCE26547.1 244 -------S-----DLLQSGTPDPSDLRMSPGNASVEHVRGMPPTTfGV-AGVDPlrdealLYSELLAEAGV-PTDT--YVFEGVPH 313
                    .......2.....22222222222333333333455555555555212.3444444333333333333333.2222..23333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2474.91
//
Query:       CCE26548.1  [L=510]
Description: related to allantoate permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-36  126.3  33.4    1.3e-36  126.3  33.4    1.5  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        4.5    6.7   0.0        4.5    6.7   0.0    3.4  4  DUF1129   Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3  33.4   1.4e-40   1.3e-36       2     353 .]      72     438 ..      71     438 .. 0.83
   2 !    3.1   0.3    0.0041        37     124     172 ..     420     471 ..     418     484 .. 0.71

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 1.4e-40
       MFS_1   2 llaaflsalarsilgpalplalaedlgispse.igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlg 98 
                 +++++l +++ +il+ a+   l +dlg+++ e +++ +++++lg++v+++p++ l++r+   rv  + ++l++++ l+ + a +++  +++ r++ G+ 
  CCE26548.1  72 CVTYALQFYDKNILSQAALFGLRRDLGLDVGErFSWCASIFYLGFLVGAYPVMLLAQRYPVERVASAIVTLWGVC-LISTTAcTNYQGIFAQRFFLGML 169
                 67899999999999999988*******************************************************.66662459999************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg.....Wravfyilaivsllafvlfllllpeepperkrkspkeee... 188
                 + ++ p+ + ++  w++k+e+++ +g++  +++  +++ pl+   l  +        Wr++fy+++++++++++l+l+ lp +p + + + p+e+    
  CCE26548.1 170 EVGISPMFMLIVGSWYKKDEQAMRMGIWLCCNGYITMISPLINYGLGsT--DpngssWRLMFYFAGGMTIVWGLLILVILPSDPIRARGFQPRERYilv 266
                 ***********************************************33..34699*******************99*************999999*** PP

       MFS_1 189 .........kgtgpaplvpawkallkdpvlwillialllfffgfsg.lltllplylqevlglsglllaglllallalvgailallagrls.drlgrrrr 276
                           + ++ ++++   +l++dp +w +++++ + +++ ++ ++t++pl+  + +++s+l +++ll++ +a +g ++ l++++l+ +  g r+ 
  CCE26548.1 267 arlrtnnsgIRNKHYKMAQ-VVELVTDPKFW-IIFSISFLCMIANApISTFVPLI-IKGFNFSNLESLLLLIPTGAWGGTFM-LVFSYLAmKYPGIRTW 361
                 **77777666666666666.999********.444444444466666*******7.*******8777777777777777666.8999999455555555 PP

       MFS_1 277 lllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 l+la+ ++ ++ + l+++ + s   +ll++ +++++ +g +++++  ++++ a+  ++  as+   + ++lg ++gp
  CCE26548.1 362 LVLAGQIVCTLGAVLLWVLPLSQRGVLLFGAYIMSTLGGGYVVLMSLQLANTAGYTKRSLASSGLYIGYCLGNFVGP 438
                 555555555555555555555777777777777777555566777777777777889999999999*********98 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0041
       MFS_1 124 gllsagfslGailgpllgglla.sslgWrav..fyilaivsllafvlfllll 172
                 +l+s+g  +G+ lg  +g+l+       r+v  f+++ i sl a+vl++++ 
  CCE26548.1 420 SLASSGLYIGYCLGNFVGPLCFkKEDAPRYVpgFIVVVISSLAAGVLAVVYR 471
                 4677778888888888888888444446666669999999999999877776 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2      0.25   2.2e+03     116     161 ..     111     157 ..     104     188 .. 0.52
   2 ?   -1.8   0.0       0.2   1.8e+03     155     178 ..     192     215 ..     182     218 .. 0.87
   3 ?    0.9   4.2     0.031   2.8e+02      95     162 ..     312     380 ..     277     399 .. 0.73
   4 ?    6.7   0.0    0.0005       4.5     102     145 ..     441     485 ..     438     491 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.25
     DUF1129 116 lllvalvgGlamvlvyrlltre.kkkkkrpplwkrllilllllvvwl 161
                 ++ +++++G++ v++    ++     +    lw ++li++ +   + 
  CCE26548.1 111 IFYLGFLVGAYPVMLLAQRYPVeRVASAIVTLWGVCLISTTACTNYQ 157
                 66677777776666666666643333334444444444444444333 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.2
     DUF1129 155 lllvvwlvlftlvallpaviNpvL 178
                 + + +wl +   ++++ + iN  L
  CCE26548.1 192 MRMGIWLCCNGYITMISPLINYGL 215
                 66889***************9877 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.031
     DUF1129  95 lfgilalfskkkqtas.iGlitlllvalvgGlamvlvyrlltrekkkkkrpplwkrllilllllvvwlv 162
                 ++ ++ l+ k  + ++  +l+ l+ +++ gG +m+++ +l ++++       l  +++++l+++++w++
  CCE26548.1 312 ISTFVPLIIKGFNFSNlESLLLLIPTGAWGGTFMLVFSYLAMKYPGIRTWLVLAGQIVCTLGAVLLWVL 380
                 5555555555444444468999999*********99999999877766677777888889999999986 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0005
     DUF1129 102 fskkkqtas.iGlitlllvalvgGlamvlvyrlltrekkkkkrpp 145
                 f+k+ +  +  G+i++++++l +G++ v++ ++ + ++++ ++ +
  CCE26548.1 441 FKKEDAPRYvPGFIVVVISSLAAGVLAVVYRYVCMWDNQRRDKAG 485
                 88888888888**************99988888877555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3803.90
//
Query:       CCE26549.1  [L=548]
Description: related to 4-coumarate-CoA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-99  331.2   0.0    9.6e-99  330.8   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    1.3e-12   48.5   0.1    2.7e-12   47.5   0.1    1.6  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.8   0.0  1.1e-102   9.6e-99       7     422 ..      26     435 ..      21     436 .. 0.87

  Alignments for each domain:
  == domain 1  score: 330.8 bits;  conditional E-value: 1.1e-102
                  HST.TSEEEEECCSTEEEEHHHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETC CS
  AMP-binding   7 ktp.dkvalvdsgegqtlTYreldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatv 102
                  ++p d+v ++d+++++++TY++++e + ++++gL+ + + +kgd+ a++ pn+++  ++ +++  aG+v++p npt+t +ela +l+ds+a +l+  +
   CCE26549.1  26 EYPpDHVLFIDGDTDHSYTYHDVKESSVQFGKGLKhNFNWQKGDVLAFFTPNCIDTPILTYGLHWAGGVASPANPTYTVDELARQLSDSKAAALV--T 121
                  5555*******999*********************999*********************************************************..9 PP

                  TCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS...-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH.HHH CS
  AMP-binding 103 dsel.leklleaaakleavklvivldadellkeeelkeeeeseekae...kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk.let 195
                  ++   ++++++a+++    + v+++ +++ +  +  ++++ +++  e   +p++++   ++dlay++Y+SGTTG PKGVml+h nlvan+++ + +++
   CCE26549.1 122 QAPFlNKAVEAAQKAGIPLDRVLLMGDGKDASGKYRHWRDLTAK--EawlQPRKTVVDPKKDLAYLVYSSGTTGLPKGVMLTHYNLVANAYQSSrVDP 217
                  99885555555555544444444444444333333333333333..13455767767778********************************777766 PP

                  CSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS CS
  AMP-binding 196 rfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllgge 293
                   f   ++d  l +lp++hi+gl+++l++++  G+++v+lpk++   +k+ ++liek++ t+++++P ++ al +++  +    ++d++slr v +g++
   CCE26549.1 218 KFLSWDSDSHLGVLPFFHIYGLSVALNITMNTGCRMVVLPKFDI--EKA-CKLIEKHGLTFLYVPPPIVLALGKHPVVD----KYDMKSLRWVNSGAA 308
                  6443348999******************************9988..333.6*********************9998888....66************* PP

                  -EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE CS
  AMP-binding 294 plspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafds 391
                  pl  +l++++ +++   v +gYGl+Et++++++  ++e +k +gsvG+ l+ +e+kivD + g+++p+ge Ge+l++gp+v+ gY+++p++  e+f+ 
   CCE26549.1 309 PLGVDLVEAVWNRLSIGVKQGYGLSETSPITHTQLPDEWWKFQGSVGRLLALMEAKIVDLD-GKELPRGEAGEILLKGPNVFHGYWNRPDLKDETFT- 404
                  **********9999999**************775557778899*****************9.99********************************9. PP

                  TCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 392 egrwlrTGDlgrldedGyleivgRkkdlikl 422
                  +++w+rTGD+g+  ++G+++i++R+k+lik 
   CCE26549.1 405 DDGWYRTGDVGYACKRGHFYITDRIKELIKY 435
                  546*********8779*************97 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.1     3e-16   2.7e-12       1      76 []     444     524 ..     444     524 .. 0.90

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 3e-16
                    HHHHHHHSSTTEEEEEEE-----.TTS---EEEEEE---.-..--HHHHHHHHHHHHT-TTTS-S.EEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpde.vkGealvafVvlkdg.s..ealeeeLkahvrkelgpyavpk.kvvfvdelpktrsGK 76 
                    e+E+ l++ +++++++V+Gv ++    e++ a+Vv +++ +  e+l++e+ +++++++ p ++ +  ++fv+e+pk +sGK
     CCE26549.1 444 ELEAKLLARQDINDVCVIGVWNNeQHTEVPRAYVVVRPDvQetEQLAQEITEWLAERVSPPKRLRgGLRFVKEIPKSASGK 524
                    89*******************995666********9877532244********************9999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 4422.03
//
Query:       CCE26550.1  [L=663]
Description: related to triacylglycerol lipase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-16   58.6   0.0      8e-16   57.4   0.0    1.7  1  Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
    9.5e-09   35.3   0.2    1.8e-08   34.4   0.2    1.3  1  Abhydrolase_1   alpha/beta hydrolase fold
    1.2e-05   24.7   0.0    2.6e-05   23.6   0.0    1.6  1  Hydrolase_4     Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   1.3e-19     8e-16       1      64 []     223     309 ..     223     309 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 1.3e-19
  Abhydro_lipase   1 vseiirkhGypveeheVqTeDGYiLtlhRipaknk.......................svssklekkpvVlLqHGLlasSevwvlng 64 
                     v++++r++G++v  + V TeDG++++l++++++++                         ++k+++k +VlL HGLl+sS+++++n+
      CCE26550.1 223 VAYYARRVGLDVDVFLVCTEDGFLIELWHVYDPRDyifhdaeeevgdntrrakrprkiFRPDKQKPKFPVLLIHGLLQSSGAYCSND 309
                     689*****************************************************9966789999999***************995 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.2     3e-12   1.8e-08       2      96 ..     291     399 ..     291     419 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3e-12
                    EEEEE-STTTCGGGGTTGHHHHHHHHT......TSEEEEEEETTSTTSSSTTTGB...........CHHSHHHHHHHHHHHHHHCTTSSEEEEEET CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd......gfdvillDlrGvgySspapacin..........ddygtasvaddldrildalgddkltlvGhS 81 
                    +++++hGl+ ss+ ++ ++  + L  +      gfdv+l + r +g+S+++ +             +++g+ ++ +  d++l  +g +kl l+ hS
     CCE26550.1 291 PVLLIHGLLQSSGAYCSND-DDSL--AfwlcksGFDVWLGNNR-CGFSPRHASLKYsdprmwswtiHHMGLYDLPALTDQVLTETGFHKLGLICHS 382
                    79***********988822.2233..1558889**********.9***99999888999999999*99**************************** PP

                    HHHHHHHHHHHHH..GG CS
  Abhydrolase_1  82 mGGmialayaaey..pe 96 
                    +G+++ l +++++  pe
     CCE26550.1 383 QGTAQTLIALSKHqrPE 399
                    *************7666 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   4.4e-09   2.6e-05       2     139 ..     287     440 ..     286     458 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 4.4e-09
  Hydrolase_4   2 epkavvvlvHGlaehsgry.....aelaeaLaaqGfavyalDhrGhGrse.........gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSm 85 
                  +pk  v+l+HGl ++sg+y     + la +L + Gf+v+  ++r  G s+         ++ + ++  +  + Dl a++++v +e +  +l l++hS 
   CCE26550.1 287 KPKFPVLLIHGLLQSSGAYcsnddDSLAFWLCKSGFDVWLGNNR-CGFSPrhaslkysdPRMWSWTIHHMGLYDLPALTDQVLTETGFHKLGLICHSQ 383
                  78888**************6665446*************99999.56666669999997888888888888*************************** PP

  Hydrolase_4  86 GGliallyllrypd.....kvaglilsaPalkikaklkappllklllkllgkllpklqv 139
                  G + +l +l ++++     k++ +   aPa    +   +++++  l++ l++++ +l +
   CCE26550.1 384 GTAQTLIALSKHQRpelgeKLTVFCALAPAAYAGPL--VNRYYFRLMNKLSPFAYQLVF 440
                  *********777666688888999999999888866..788888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4892.96
//
Query:       CCE26551.1  [L=1411]
Description: probable peroxin-6 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-51  171.7   0.0    3.5e-42  143.9   0.0    2.8  2  AAA           ATPase family associated with various cellular 
    5.9e-05   23.5   2.1      0.015   15.7   0.0    3.9  3  AAA_16        AAA ATPase domain
    7.2e-05   22.6   0.0     0.0014   18.4   0.0    2.5  2  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
    0.00038   19.6   0.0     0.0013   17.9   0.0    1.8  2  Parvo_NS1     Parvovirus non-structural protein NS1
    0.00068   19.3   1.3      0.016   14.8   0.0    3.4  3  AAA_25        AAA domain
    0.00083   19.7   0.0      0.023   15.1   0.0    2.8  2  RNA_helicase  RNA helicase
    0.00092   19.0   3.8        0.6   10.0   0.1    3.0  2  AAA_lid_3     AAA+ lid domain
     0.0012   18.6   0.0      0.003   17.3   0.0    1.6  1  IstB_IS21     IstB-like ATP binding protein
      0.006   16.9   0.0      0.032   14.5   0.0    2.3  1  AAA_22        AAA domain
     0.0084   16.2   0.0       0.03   14.4   0.0    1.9  1  AAA_2         AAA domain (Cdc48 subfamily)
  ------ inclusion threshold ------
      0.013   14.7   0.1      0.057   12.6   0.0    1.8  2  TIP49         TIP49 P-loop domain
      0.018   15.0   0.0      0.084   12.9   0.0    2.2  1  AAA_5         AAA domain (dynein-related subfamily)
      0.022   14.1   0.1      0.056   12.8   0.1    1.6  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.027   13.8   0.0      0.057   12.8   0.0    1.4  1  ATPase        KaiC
      0.035   14.1   0.1       0.45   10.5   0.0    2.2  2  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
      0.047   13.9   0.0       0.42   10.8   0.0    2.4  2  AAA_33        AAA domain
       0.06   13.6   0.0       0.29   11.4   0.0    2.1  2  AAA_28        AAA domain
      0.067   12.6   0.0       0.14   11.6   0.0    1.4  1  PhoH          PhoH-like protein
      0.076   13.6   0.0       0.24   11.9   0.0    1.9  1  AAA_18        AAA domain
      0.099   12.2   0.0       0.19   11.3   0.0    1.4  1  AAA_7         P-loop containing dynein motor region
       0.13   12.3   0.0       0.92    9.6   0.0    2.1  2  AAA_14        AAA domain
        0.2   11.4   0.1        0.8    9.4   0.0    1.9  2  AAA_24        AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.6e-08   2.1e-05       7     129 ..     769     880 ..     763     883 .. 0.78
   2 !  143.9   0.0   4.3e-45   3.5e-42       1     130 [.    1038    1172 ..    1038    1174 .. 0.96

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.6e-08
                 TTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHH.HHHHHHHHHHHTS.....TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   7 pGtGKTllakavakelgvefleisgsellskyvgesek.kirelfkeakeka.....kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                   +GKT+la+av+ ++g + + i++ ells+  g +++ k+++l+++  e a     +++ l+i  ++al  +r          +  ++   l++ +  
  CCE26551.1 769 RNIGKTTLASAVCADIGLHTYCIDAYELLSEGGGSGNDvKTEGLLRTRAERAiscgpDCCALLIQHVEALSADR----------IETTIRDILEDSRV- 856
                 568**************************99777665425555555544444778666699*********9888..........77777777777655. PP

                 SSTEEEEEEESSGGGSTHHHHSTTSSEEEE CS
         AAA 100 eskvivigatnrpdkldpallrgRfdrkie 129
                      +i++tn++d++++ ++   f++++e
  CCE26551.1 857 -----LIATTNEVDQVPDGVR-ALFTHELE 880
                 .....9**********99988.67776665 PP

  == domain 2  score: 143.9 bits;  conditional E-value: 4.3e-45
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH..TTCCCHHHHHHHHHHHHHHHH CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr..sgseseeeervvnqLlteldg 95  
                  +l+yGppGtGKTllaka+a+e   +f++++g+ell++y+gese+++r +f++a+  + p+++f+DE+d++a++r  +g++ ++ +r+v+qLl+eldg
  CCE26551.1 1038 ILFYGPPGTGKTLLAKAIATEYCLNFFSVKGPELLNMYIGESEANVRRVFQRARDAR-PCVVFFDELDSVAPKRgnQGDSGGVMDRIVSQLLAELDG 1133
                  69****************************************************998.****************9888899**************** PP

                  TTTS...SSTEEEEEEESSGGGSTHHHHS.TTSSEEEET CS
         AAA   96 vkkk...eskvivigatnrpdkldpallr.gRfdrkiei 130 
                  ++      + v+v+gatnrpd ldpallr gRfd+ +++
  CCE26551.1 1134 MSGGeddAGGVFVVGATNRPDLLDPALLRpGRFDKMLYL 1172
                  9988777677************************99886 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.94   7.7e+02      25      51 ..     761     787 ..     736     882 .. 0.78
   2 !   15.7   0.0   1.9e-05     0.015      25      51 ..    1036    1062 ..    1016    1080 .. 0.83
   3 ?    3.9   0.0     0.077        63     124     147 ..    1084    1106 ..    1078    1147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.94
      AAA_16  25 elvllsGesGvGKsslvrellralekd 51 
                  ++l s ++ +GK++l+ ++   +  +
  CCE26551.1 761 AILLTSTHRNIGKTTLASAVCADIGLH 787
                 56666778889******9998777655 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.9e-05
      AAA_16   25 elvllsGesGvGKsslvrellralekd 51  
                  + +l++G++G+GK+ l+++++++++ +
  CCE26551.1 1036 SGILFYGPPGTGKTLLAKAIATEYCLN 1062
                  789*****************9988766 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.077
      AAA_16  124 krllallsrderplvlvlDdlqwa 147 
                  +r +++++  +rp v+++D+l+ +
  CCE26551.1 1084 RRVFQRARD-ARPCVVFFDELDSV 1106
                  666778887.***********954 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.39   3.1e+02      32      60 ..     759     787 ..     736     796 .. 0.73
   2 !   18.4   0.0   1.7e-06    0.0014      34      69 ..    1036    1071 ..    1007    1107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.39
      RuvB_N  32 aldhvllyGpPGlGkttlakiiakelgvk 60 
                 a+  +l +    +Gkttla+ +++++g +
  CCE26551.1 759 AVAILLTSTHRNIGKTTLASAVCADIGLH 787
                 4445555667789********99998865 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.7e-06
      RuvB_N   34 dhvllyGpPGlGkttlakiiakelgvklkitsgPvl 69  
                    +l+yGpPG Gkt lak ia+e   ++ +  gP l
  CCE26551.1 1036 SGILFYGPPGTGKTLLAKAIATEYCLNFFSVKGPEL 1071
                  469**********************99999999976 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         3   2.5e+03     200     232 ..     259     292 ..     253     303 .. 0.83
   2 !   17.9   0.0   1.6e-06    0.0013     107     136 ..    1028    1057 ..    1023    1066 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3
   Parvo_NS1 200 qtpviitsnvditlv.vsgntssvahanalkdrm 232
                 + pv +tsn+++  v  +  ++++++  a ++r+
  CCE26551.1 259 KRPVAMTSNHRLNGVgDDDDVNTDQFYSAAEERY 292
                 66999********998888888888888888876 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.6e-06
   Parvo_NS1  107 lskqlgkrntvwfyGpantGktnlaeaIak 136 
                  + k + kr  ++fyGp+ tGkt la+aIa+
  CCE26551.1 1028 FAKGMKKRSGILFYGPPGTGKTLLAKAIAT 1057
                  667789**********************96 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2      0.45   3.7e+02      31      57 ..     758     784 ..     745     788 .. 0.82
   2 !   14.8   0.0   1.9e-05     0.016      14      97 ..    1017    1094 ..    1009    1135 .. 0.67
   3 ?   -1.8   0.0       2.4     2e+03      88     165 ..    1179    1252 ..    1166    1272 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.45
      AAA_25  31 pagelallaGapgtGKttlaldlalav 57 
                 pa ++ l   ++  GKttla+ +++++
  CCE26551.1 758 PAVAILLTSTHRNIGKTTLASAVCADI 784
                 56666677778899*******999976 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.9e-05
      AAA_25   14 dlaapppprrwlvkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvap.eqgkVlyvsaEdsedelrrRlravgeal 97  
                   ++ p+++++   kg+  + + +l++G+pgtGKt la  +a ++++  +++  v+  e  +  +     se+++rr +++++ a+
  CCE26551.1 1017 TIQLPLERPELFAKGM-KKRSGILFYGPPGTGKTLLAKAIATEYCL--NFFS-VKGpELLNMYIGE---SEANVRRVFQRARDAR 1094
                  4666788888888898.79999*********************996..6666.2221333333333...3335555555555554 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.4
      AAA_25   88 rRlravgealrddarl.lvldlagv.eslpLfakdrggtlltadvdaleaaieevegvrlvviDplsralggdensnsdv 165 
                  ++ + +++al+++ +l + l+l +v ++lpL++++++  +l +d   + +a+++        +D   ra +++ +++s +
  CCE26551.1 1179 EKQQTILQALTRKFTLdPSLSLRNVaQRLPLTYTGADFYALCSDA--MLKAVTRQS----SAVDAKVRAINAQRTDKSPI 1252
                  334444444444445544556667777899999888877765552..333333311....23566666666666666655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.58   4.7e+02       7      24 ..     769     786 ..     762     803 .. 0.80
   2 !   15.1   0.0   2.8e-05     0.023       1      45 [.    1038    1085 ..    1038    1131 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.58
  RNA_helicase   7 sgeGKStlakeLakallk 24 
                   +++GK+tla  +++++  
    CCE26551.1 769 RNIGKTTLASAVCADIGL 786
                   589**********99974 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.8e-05
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkkl...klkkkdsvysrnpeddfwd 45  
                    i++yGp+g+GK++lak +a++ + ++   k ++  ++y++++e ++  
    CCE26551.1 1038 ILFYGPPGTGKTLLAKAIATEYCLNFfsvKGPELLNMYIGESEANVRR 1085
                    789*****************9996665666666677777777666544 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.2    0.0013       1.1       1      29 [.     907     935 ..     907     947 .. 0.92
   2 !   10.0   0.1   0.00074       0.6       5      39 ..    1201    1236 ..    1197    1250 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0013
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAall 29 
                 ++dl+ +A +T+  +  Dl+ ++++A+l+
  CCE26551.1 907 SIDLNSIALKTAALVAGDLVDVVDRASLA 935
                 58************************985 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00074
   AAA_lid_3    5 keLAerTe.GySGADlaalcreAallAlrrgikeit 39  
                   ++A+r +  y+GAD  alc  A l A+ r   +++
  CCE26551.1 1201 RNVAQRLPlTYTGADFYALCSDAMLKAVTRQSSAVD 1236
                  5566655544*****************998776665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.6e-06     0.003      45      78 ..    1033    1066 ..    1028    1093 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.6e-06
   IstB_IS21   45 ekkenivllGpsGvGKshlaialgveavraglsv 78  
                  +k+ +i++ Gp+G+GK+ la a+++e + + +sv
  CCE26551.1 1033 KKRSGILFYGPPGTGKTLLAKAIATEYCLNFFSV 1066
                  67899********************999877666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.9e-05     0.032       4      30 ..    1034    1060 ..    1030    1112 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.9e-05
      AAA_22    4 tagilvvtGesGtGKTtllrrlleqld 30  
                  +++ ++ +G++GtGKT+l++ ++ +++
  CCE26551.1 1034 KRSGILFYGPPGTGKTLLAKAIATEYC 1060
                  6777899***************99985 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.7e-05      0.03       3      89 ..    1035    1115 ..    1033    1133 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.7e-05
                  ---EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHH.TTS......EEEEETGGG---------- CS
       AAA_2    3 iisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgae.egG......ivllDEidKihpkessgad 89  
                   + il+ gp g+Gkt+laka+a    +    ++  +   ell          + ig+++++v++  ++       +v++DE+d ++pk+ ++ d
  CCE26551.1 1035 RSGILFYGPPGTGKTLLAKAIATEYCL----NFFSVKGPELLN---------MYIGESEANVRRVfQRArdarpcVVFFDELDSVAPKRGNQGD 1115
                  5679******************99986....666666666666.........44444444443221333444678************7444444 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.95   7.8e+02      47      78 ..     756     788 ..     738     810 .. 0.77
   2 ?   12.6   0.0     7e-05     0.057      52      99 ..    1037    1082 ..    1027    1094 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.95
                 XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  47 klaGravLla.GpsgtGktalaiaiskelgedv 78 
                 k+   a+Ll+  ++  Gkt la a+  ++g ++
  CCE26551.1 756 KMPAVAILLTsTHRNIGKTTLASAVCADIGLHT 788
                 5555677776156789***********999544 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 7e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   52 avLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevl 99  
                  ++L+ Gp+gtGkt la ai+ e    + f +++g e+  + +  +e+ 
  CCE26551.1 1037 GILFYGPPGTGKTLLAKAIATEYC--LNFFSVKGPELLNMYIGESEAN 1082
                  79********************98..8999****99999998888874 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0    0.0001     0.084       2      34 ..    1038    1070 ..    1037    1109 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0001
                  EEEE--SSSSHHHHHHHGGGGBS--EEEEE--T CS
       AAA_5    2 vlLvGppGtgKselaerlaaalnreveyvqltr 34  
                  +l  GppGtgK+ la+ +a  ++ +++ v +++
  CCE26551.1 1038 ILFYGPPGTGKTLLAKAIATEYCLNFFSVKGPE 1070
                  7899***************99998888887765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   6.9e-05     0.056      25      43 ..    1038    1056 ..    1028    1061 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.9e-05
  Mg_chelatase   25 lllvGppGsGKtmlakrlp 43  
                    +l++GppG+GKt+lak+++
    CCE26551.1 1038 ILFYGPPGTGKTLLAKAIA 1056
                    89**************986 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.9e-05     0.057      10      40 ..    1026    1056 ..    1022    1084 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.9e-05
      ATPase   10 eilkgGipegrvvlitGepGtGKtifalqFl 40  
                  e++  G+ +++ +l +G pGtGKt++a+  +
  CCE26551.1 1026 ELFAKGMKKRSGILFYGPPGTGKTLLAKAIA 1056
                  68899*********************98655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.6   4.9e+02      22      46 ..     763     787 ..     738     798 .. 0.67
   2 ?   10.5   0.0   0.00055      0.45      14      51 ..    1032    1069 ..    1015    1083 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.6
                 EEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  22 ilLeGdLGaGKTtlvrglakalgve 46 
                 +l +     GKTtl+ ++++ +g++
  CCE26551.1 763 LLTSTHRNIGKTTLASAVCADIGLH 787
                 444455678*********9998875 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00055
                  HHHCHTEEEEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE   14 lakalgdvilLeGdLGaGKTtlvrglakalgve..evkSP 51  
                  ++k  ++ il++G+ G+GKT l++++a ++ ++  +vk P
  CCE26551.1 1032 MKK--RSGILFYGPPGTGKTLLAKAIATEYCLNffSVKGP 1069
                  333..4569*******************998877788877 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.4   1.1e+03      11      35 ..     772     798 ..     769     859 .. 0.76
   2 ?   10.8   0.0   0.00052      0.42       2      37 ..    1038    1075 ..    1038    1097 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.4
      AAA_33  11 GKstlaerllkklg..avllssdtlrr 35 
                 GK+tla  +++  g  ++ ++  +l++
  CCE26551.1 772 GKTTLASAVCADIGlhTYCIDAYELLS 798
                 9********998887755555555444 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00052
      AAA_33    2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrl 37  
                  +l+ G+pG+GK+ la+ ++ +    ++ +  ++l++++
  CCE26551.1 1038 ILFYGPPGTGKTLLAKAIATEYClnFFSVKGPELLNMY 1075
                  6899*************998766666666666666555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         4   3.3e+03      11      25 ..     772     787 ..     771     815 .. 0.73
   2 ?   11.4   0.0   0.00035      0.29       2      39 ..    1038    1080 ..    1037    1096 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4
      AAA_28  11 GKTtlleaLaar.gyp 25 
                 GKTtl++a  a+ g  
  CCE26551.1 772 GKTTLASAVCADiGLH 787
                 9******988776544 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00035
      AAA_28    2 ivitGgestGKTtlleaLaar...gypvv..pEaareileekl 39  
                  i + G+++tGKT l++a+a +   ++  v  pE   +++ e  
  CCE26551.1 1038 ILFYGPPGTGKTLLAKAIATEyclNFFSVkgPELLNMYIGESE 1080
                  7899***************766774444447888877776655 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00017      0.14      13      44 ..    1029    1060 ..    1020    1067 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
                  HHHHHH-SEEEEE--TTSSTTHHHHHHHHHHH CS
        PhoH   13 lealkkndivfaiGpaGtGKtylavalaveal 44  
                  ++ +kk + +   Gp GtGKt+la a+a e++
  CCE26551.1 1029 AKGMKKRSGILFYGPPGTGKTLLAKAIATEYC 1060
                  5567777778889**************99876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0003      0.24       1      25 [.    1038    1083 ..    1038    1147 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0003
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf......................g 25  
                  Il  G+pG+GKt lak+++ +  +                      +
  CCE26551.1 1038 ILFYGPPGTGKTLLAKAIATEY-ClnffsvkgpellnmyigeseanV 1083
                  8999**************8872.233344444333333444443333 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00023      0.19      26      56 ..    1028    1058 ..    1023    1107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00023
       AAA_7   26 lelllknkkpvllvGptGtGKtviikdllkk 56  
                  + + +k++  +l++Gp GtGKt+++k + ++
  CCE26551.1 1028 FAKGMKKRSGILFYGPPGTGKTLLAKAIATE 1058
                  566789999***************9986654 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.5   1.2e+03      11      22 ..     769     780 ..     762     789 .. 0.85
   2 ?    9.6   0.0    0.0011      0.92       6      76 ..    1039    1106 ..    1034    1126 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.5
      AAA_14  11 RrvGKTtllkql 22 
                 R +GKTtl+  +
  CCE26551.1 769 RNIGKTTLASAV 780
                 99******8765 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0011
      AAA_14    6 vitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76  
                  +  G+  +GKT l+k ++ e+     +++ ++  +  +  + ++e + + +++++++ +  ++f+DE   v
  CCE26551.1 1039 LFYGPPGTGKTLLAKAIATEYC---LNFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSV 1106
                  6689999***********9999...5555555555444444455545555555555568999*****8765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.7   2.2e+03      12      22 ..     770     780 ..     767     793 .. 0.75
   2 ?    9.4   0.0   0.00098       0.8       5      24 ..    1038    1056 ..    1034    1072 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.7
      AAA_24  12 giGKTtlakel 22 
                  iGKTtla+  
  CCE26551.1 770 NIGKTTLASAV 780
                 69*****9876 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00098
      AAA_24    5 iliyGpsgiGKTtlakelgp 24  
                  il yGp+g+GKT lak +  
  CCE26551.1 1038 ILFYGPPGTGKTLLAKAI-A 1056
                  789************988.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.47
# Mc/sec: 8971.49
//
Query:       CCE26552.1  [L=439]
Description: related to cylicin I [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   18.7   0.0     0.0015   18.7   0.0    2.8  2  SH3BGR     SH3-binding, glutamic acid-rich protein
  ------ inclusion threshold ------
       0.19   11.7  37.8       0.26   11.3  37.8    1.1  1  TFIIA      Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> SH3BGR  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.7e-07    0.0015       3      87 ..       6      87 ..       4      99 .. 0.77
   2 ?   -5.6   5.8         2   1.8e+04      39      49 ..     378     388 ..     339     420 .. 0.53

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.7e-07
                EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHCST-CCCS-SSSS--S-EEEETTEEEEEHHHHHHHH CS
      SH3BGR  3 lkvyvasssgskeikkkqqevlriLdakkiefdevDitkdeeerelmrenaapeekkpengkplPPqifnedeYcGDydaffeak 87
                l ++ + ++gs  i    ++  +iL a++++f+ vDi+ d++ r l  ++a+   k+ + +    P +++e   +GD  +    +
  CCE26552.1  6 LYIFTSLTAGSSHIVTATSRLETILRANRVPFKAVDIAVDDKARMLWGRRAG---KDDAGRLRKLPGLVQEGLVIGDLVEIEDWN 87
                567888899*******************************999998888885...444444444567777777777766555555 PP

  == domain 2  score: -5.6 bits;  conditional E-value: 2
                 TTT-HHHHHHH CS
      SH3BGR  39 itkdeeerelm 49 
                 + ++e+++e+ 
  CCE26552.1 378 VKEEEKKKEEE 388
                 22222222222 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  37.8   2.9e-05      0.26      59     349 ..     107     433 ..      94     439 .] 0.34

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.9e-05
       TFIIA  59 qfvlqlpqslkqalqasaaaa...sqapastsqslpslvipagksvqsltanssaataatfslpakleppvqipagvtlqtasgqlykvnv...qasga 151
                 +   ++p + k++++ +aa+    +++p +ts+++p+ + pa+ s+++ +a    + +++  +p+++++  ++p   ++ t  ++    +v   +a++a
  CCE26552.1 107 NI-HNKPPEPKKTQK-PAAKPavsKNTPVATSKTAPA-APPAP-SLPKAKA----KPSSSSPTPTTTKTGTKTPDAESQTTLPMR----SVadeAAQKA 193
                 33.333333333332.222111112222222222222.22222.2333332....222222222222221122222222222211....1222355555 PP

       TFIIA 152 qqiaaqplqqvvqqsqgsaaqssvaalqaq....sqqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqe.......................... 220
                 ++i  + l ++v+   g+ a s++aa  a+    s+  +a++++ +  +     +++ ++ +q+ ++++ q++                          
  CCE26552.1 194 KEIRLKSLREKVH---GKKADSDAAAEPASkattSNTDTAQIKETTI-T-----EKSTPAGLQSPTSSTWQNKdagslipqsptsgkwrpgsiigamsh 283
                 5555555555544...3322222222111111111122222222222.1.....222233333332222222234455566666788899999999999 PP

       TFIIA 221 .................esqqaqqasqe........qvagsqvessqtdgaedaleeespv...legelsaeeeagaqkeelsreeidrireealkake 291
                                  e + +++   +        +  +++++ + +d+ +d++e+++++    + + ++ +e++ ++e+++++e+++ + ++ k ke
  CCE26552.1 284 dgavdegvnkgeprgekE-SDQAKV--SlkdvkaedD--NKGSKEAVKDQRNDEDEKKEEAkkeEKVKEAEVKEEKVKEENVKEAEVKEAEVKEEKVKE 377
                 999999988887766531.111111..0223444321..234444444444444444444422212222222222223333444444433112222222 PP

       TFIIA 292 lekeskkkkraeessladlseilqlDGagddsde......eeeeeesdedsdsessddedeqve 349
                 +++e+kkk++  e++ + ++e    DG  d ++e        e  es++d++ + +d     + 
  CCE26552.1 378 VKEEEKKKEE--EKKEEVEKEKEAKDGVVDGNKEettvppS-ETAESKKDDEATGED-----QT 433
                 2222222222..23333344455556666666652222331.222222222211111.....22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3265  (0.182107); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                       293  (0.0163422); expected 17.9 (0.001)
Passed Fwd filter:                        92  (0.00513135); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.64u 0.36s 00:00:02.00 Elapsed: 00:00:00.55
# Mc/sec: 2400.16
//
Query:       CCE26553.1  [L=154]
Description: uncharacterized protein CPUR_00021 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.14   12.4   0.6       0.26   11.6   0.6    1.3  1  Inhibitor_I67  Bromelain inhibitor VI
        2.7    6.8   8.8        2.9    6.7   8.8    1.1  1  NUFIP2         Nuclear fragile X mental retardation-interacti


Domain annotation for each model (and alignments):
>> Inhibitor_I67  Bromelain inhibitor VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6   2.9e-05      0.26       7      15 ..      38      46 ..      35      51 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.9e-05
                   E----SS-- CS
  Inhibitor_I67  7 CaDtysDCP 15
                   CaD ysDCP
     CCE26553.1 38 CADSYSDCP 46
                   ********9 PP

>> NUFIP2  Nuclear fragile X mental retardation-interacting protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.8   0.00033       2.9     307     379 ..      27     100 ..       5     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00033
      NUFIP2 307 vPmsAmksvt..sasFsnGPvlgggdgcslppgvgpllataasavesvaspsgesvasdlestsssaeqkkpsll 379
                   m  +k++t  + s+s+ P++  +  ++ ++++ + +a+a++++ +v+s s  + ++ +e+t+++ e+ ++sll
  CCE26553.1  27 AKMTQVKTITrcADSYSDCPLSKTSALATSASSSSSSFAAATTTTATVPS-SFAAQTPVVETTPVAHETSTTSLL 100
                 56999****943459******99999777778889999999999999999.777777889999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1159.94
//
Query:       CCE26554.1  [L=596]
Description: uncharacterized protein CPUR_00022 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.089   12.8   0.0       0.17   11.9   0.0    1.4  1  PGA2      Protein trafficking PGA2


Domain annotation for each model (and alignments):
>> PGA2  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.4e-06      0.17      23      60 ..     309     349 ..     290     395 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.4e-06
        PGA2  23 vggYlllRPYleklfkklqekqrekeeekeeaeekaa...k 60 
                 v +Y ++R Y+++l ++ q+ + ++++++ee+e++     +
  CCE26554.1 309 VQFYPTVRDYIMRLVTRRQMSRLRRRQQEEEEEADRIdweA 349
                 778*****************999888888877766554432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4089.92
//
Query:       CCE26555.1  [L=353]
Description: uncharacterized protein CPUR_00023 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2558.85
//
Query:       CCE26556.1  [L=691]
Description: uncharacterized protein CPUR_00024 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-57  192.6   0.0    1.4e-56  191.7   0.0    1.5  1  Helitron_like_N  Helitron helicase-like domain at N-terminus
    9.6e-19   67.8   0.0    1.4e-18   67.3   0.0    1.2  1  PIF1             PIF1-like helicase
      2e-06   27.7   0.0      3e-06   27.1   0.0    1.2  1  AAA_30           AAA domain
    0.00092   19.3   0.0     0.0017   18.4   0.0    1.4  1  ResIII           Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.035   13.7   0.0      0.056   13.0   0.0    1.2  1  C9orf72-like     C9orf72-like protein family
      0.047   14.1   0.0       0.11   12.9   0.0    1.6  1  AAA_16           AAA ATPase domain
      0.052   12.7   0.0      0.083   12.0   0.0    1.2  1  DUF815           Protein of unknown function (DUF815)
      0.089   12.5   0.0       0.22   11.2   0.0    1.6  2  Sigma54_activat  Sigma-54 interaction domain
       0.23   11.2   0.0       0.35   10.6   0.0    1.3  1  AAA_11           AAA domain


Domain annotation for each model (and alignments):
>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7   0.0   7.1e-60   1.4e-56       1     190 []       8     181 ..       8     181 .. 0.95

  Alignments for each domain:
  == domain 1  score: 191.7 bits;  conditional E-value: 7.1e-60
  Helitron_like_N   1 yaaflLqgRfa..ehsrflflafnllqqyvvdayakveeerlsflrknqkelraesltgeeLkealeeetedeelkllgklvilpssvpgspry 92 
                      +++f+L++R a  e+s+ lfla +l+qqyv+da++ +e+ rl+++++ qk++ra+ + g  L +a+ ++            vilpss++g++ry
       CCE26556.1   8 FYRFRLHERPAavEQSA-LFLANRLFQQYVIDAWVACETTRLDWINNYQKDIRADVFVG--LGDAVGRK------------VILPSSFTGGDRY 86 
                      799***97765225666.*****************************************..99987776............************* PP

  Helitron_like_N  93 mqekrqdlmaivrelgkPdlFiTltcndkwpeikeelrkkkkaqtaadrpdivarvFhrkleaflkdllkegvfGkvsayvytvEfQkRGlpHa 186
                      mq+++qd+maivr++g+P++FiT t+n++wpeik+ l  +++ q+a+drpd+++rvFh+k++++l+d++++ +fG  +a+vyt+E+QkRGl+H+
       CCE26556.1  87 MQQLYQDSMAIVRQIGPPTFFITSTANPNWPEIKDYL--RPG-QQANDRPDLISRVFHLKVREMLHDVRQDMIFGPYNAHVYTIEYQKRGLSHM 177
                      *************************************..999.*************************************************** PP

  Helitron_like_N 187 HlLl 190
                      HlLl
       CCE26556.1 178 HLLL 181
                      **97 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   6.9e-22   1.4e-18       1      72 [.     582     654 ..     582     670 .. 0.92

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 6.9e-22
                 ---HHHHHHHHHH.......HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESSHHHHHCC.TSEEC CS
        PIF1   1 qLneeQkkvfdaiieavln.ekgklfFvtGsgGtgKtflwkallkklrsegkivlavAssGvAalllegGrta 72 
                 +Ln++Q+++f a ++av++  +   f+++G gGtgKtfl++al+   r++gk+v+ vAs+G+Aalll+gGr  
  CCE26556.1 582 KLNADQEAAFLATTNAVNDdPSTTHFYLQGPGGTGKTFLYRALYYHYRTQGKTVISVASTGIAALLLPGGRAY 654
                 69***************994567889********************************************965 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.5e-09     3e-06       2      62 ..     583     648 ..     582     673 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.5e-09
      AAA_30   2 lnaeQaaaveallts.....gdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvL 62 
                 lna+Q+aa+ a+++      +     l+Gp GtGKt++ +al  +++++g++vi +A+tg aA  L
  CCE26556.1 583 LNADQEAAFLATTNAvnddpSTTHFYLQGPGGTGKTFLYRALYYHYRTQGKTVISVASTGIAALLL 648
                 677777777555543111112346789***********************************9776 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.3e-07    0.0017       3      61 ..     582     639 ..     580     647 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.3e-07
                 EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEE CS
      ResIII   3 elreyQeeaienlleklks.krdkrglikmaTGtGKTlvaaklierllkkgkeekflflv 61 
                 +l+  Qe a  ++ +++++    ++++++ + GtGKT+++ +l ++++++gk   ++ ++
  CCE26556.1 582 KLNADQEAAFLATTNAVNDdPSTTHFYLQGPGGTGKTFLYRALYYHYRTQGK--TVISVA 639
                 68899***********98755566************************9877..565555 PP

>> C9orf72-like  C9orf72-like protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.8e-05     0.056     124     172 ..     598     646 ..     581     649 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
  C9orf72-like 124 fpldiadTvlaeekskdsenkFlskaitsHLqtqgttiiegsskeevnk 172
                   ++ d+++T++  +  + + + Fl++a+  H +tqg t+i + s+  ++ 
    CCE26556.1 598 VNDDPSTTHFYLQGPGGTGKTFLYRALYYHYRTQGKTVISVASTGIAAL 646
                   667999*********************************9999877665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.4e-05      0.11      21      53 ..     601     633 ..     586     673 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.4e-05
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdgg 53 
                 ++++   +l G+ G+GK+ l r+l+ +++++g 
  CCE26556.1 601 DPSTTHFYLQGPGGTGKTFLYRALYYHYRTQGK 633
                 34448999*****************99998843 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.2e-05     0.083      35      94 ..     586     645 ..     563     648 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.2e-05
      DUF815  35 kqkealventeqfleglpannvLLwGarGtGKSslvkallneyaeegLrlievekedlke 94 
                 +q++a+++ t++  ++ ++ +  L G  GtGK  l +al  +y+++g  +i v+ + ++ 
  CCE26556.1 586 DQEAAFLATTNAVNDDPSTTHFYLQGPGGTGKTFLYRALYYHYRTQGKTVISVASTGIAA 645
                 35566777788888888889********************************99887766 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.4   6.8e+03     125     148 ..     275     297 ..     273     301 .. 0.77
   2 ?   11.2   0.0   0.00011      0.22      20      65 ..     602     647 ..     584     650 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.4
                      BTSSSEEE--EEEEEEESS-HHHH CS
  Sigma54_activat 125 vGsskeikvdvriiaatnedleea 148
                      vGs ++++vd r ++a n++l ++
       CCE26556.1 275 VGS-RTVQVDNRSVVAFNKKLMHK 297
                      554.67899999999999998776 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00011
                      TSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTC CS
  Sigma54_activat  20 ktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeel 65 
                      +++++  ++G  GtGK++l ra++ + + + k +++v  + i++ l
       CCE26556.1 602 PSTTHFYLQGPGGTGKTFLYRALYYHYRTQGKTVISVASTGIAALL 647
                      3458899**************************9999888776655 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00017      0.35       2      42 ..     583     629 ..     582     678 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
      AAA_11   2 lndsqreai...ksalsese...itliqGPPGtgKTktivellsqll 42 
                 ln++q+ a+   ++a++ +     + +qGP GtgKT+   +l+ +  
  CCE26556.1 583 LNADQEAAFlatTNAVNDDPsttHFYLQGPGGTGKTFLYRALYYHYR 629
                 89999999977666666666777789**********88877776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4915.35
//
Query:       CCE26557.1  [L=560]
Description: uncharacterized protein CPUR_00025 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-18   66.8   0.0    2.7e-18   66.3   0.0    1.2  1  PIF1             PIF1-like helicase
    1.8e-08   34.8   0.4    3.2e-08   34.0   0.4    1.4  1  Helitron_like_N  Helitron helicase-like domain at N-terminus
    5.4e-06   26.3   0.0      8e-06   25.7   0.0    1.2  1  AAA_30           AAA domain
     0.0035   17.4   0.0     0.0059   16.6   0.0    1.3  1  ResIII           Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.096   12.4   0.0       0.26   11.0   0.0    1.6  2  Sigma54_activat  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   7.4e-22   2.7e-18       1      72 [.     458     530 ..     458     545 .. 0.92

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 7.4e-22
                 ---HHHHHHHHHH.......HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESSHHHHHCC.TSEEC CS
        PIF1   1 qLneeQkkvfdaiieavln.ekgklfFvtGsgGtgKtflwkallkklrsegkivlavAssGvAalllegGrta 72 
                 +Ln++Q+++f a ++av++  +   f+++G gGtgKtfl++ l+   r++gk+v+ vAs+G+Aalll+gGr  
  CCE26557.1 458 KLNADQEAAFLATTNAVNDdPSTAHFYLQGPGGTGKTFLYRILYYHYRTQGKTVISVASTGIAALLLPGGRAY 530
                 69***************99456788*********************************************965 PP

>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.4     9e-12   3.2e-08     156     190 .]       1      35 [.       1      35 [. 0.95

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 9e-12
  Helitron_like_N 156 flkdllkegvfGkvsayvytvEfQkRGlpHaHlLl 190
                      +l+d++++ +fG  +a+vyt+E+QkRGl+H+HlLl
       CCE26557.1   1 MLHDVRQDMIFGPYNAHVYTIEYQKRGLSHMHLLL 35 
                      578999***************************97 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.2e-09     8e-06       2      62 ..     459     524 ..     458     548 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2.2e-09
      AAA_30   2 lnaeQaaaveallts.....gdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvL 62 
                 lna+Q+aa+ a+++      +     l+Gp GtGKt++ + l  +++++g++vi +A+tg aA  L
  CCE26557.1 459 LNADQEAAFLATTNAvnddpSTAHFYLQGPGGTGKTFLYRILYYHYRTQGKTVISVASTGIAALLL 524
                 677777777655543111212346789***********************************9776 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.6e-06    0.0059       3      61 ..     458     515 ..     456     523 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.6e-06
                 EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEE CS
      ResIII   3 elreyQeeaienlleklks.krdkrglikmaTGtGKTlvaaklierllkkgkeekflflv 61 
                 +l+  Qe a  ++ +++++     +++++ + GtGKT+++  l ++++++gk   ++ ++
  CCE26557.1 458 KLNADQEAAFLATTNAVNDdPSTAHFYLQGPGGTGKTFLYRILYYHYRTQGK--TVISVA 515
                 68899************8645555*********************9999876..565555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   3.9e+03     125     149 ..     129     152 ..     125     156 .. 0.79
   2 ?   11.0   0.0   7.2e-05      0.26      20      65 ..     478     523 ..     460     526 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                      BTSSSEEE--EEEEEEESS-HHHHH CS
  Sigma54_activat 125 vGsskeikvdvriiaatnedleeav 149
                      vGs ++++vd r ++a n++l ++ 
       CCE26557.1 129 VGS-RTVQVDNRSVVAFNKKLMNKY 152
                      554.678999999999999998765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 7.2e-05
                      TSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTC CS
  Sigma54_activat  20 ktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeel 65 
                      +++++  ++G  GtGK++l r ++ + + + k +++v  + i++ l
       CCE26557.1 478 PSTAHFYLQGPGGTGKTFLYRILYYHYRTQGKTVISVASTGIAALL 523
                      3458999*************************99999888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4015.38
//
Query:       CCE26558.1  [L=335]
Description: related to F1F0-ATPase complex assembly protein ATP11 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-93  311.3   0.0    8.3e-93  311.1   0.0    1.0  1  ATP11     ATP11 protein


Domain annotation for each model (and alignments):
>> ATP11  ATP11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.1   0.0   4.6e-97   8.3e-93       2     272 .]      48     328 ..      47     328 .. 0.86

  Alignments for each domain:
  == domain 1  score: 311.1 bits;  conditional E-value: 4.6e-97
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXX---............SS CS
       ATP11   2 vlekYreKLeqkakeeglesieeLkeaykdkieekrkeaaaid..........leesksesekekeakasssektekkesaaksk.....kkskskspv 85 
                 vlekYr+KL++kak+egl sie Lk+ay+d+ie++rk   a++               ++ +++++ +  s+ k++  +s+a  +     ++++ ++ +
  CCE26558.1  48 VLEKYRQKLDSKAKKEGLGSIEALKSAYADRIEAQRKTD-AVQfplppipqaaG----TPVSQPNRGPLPSQVKSADDSSKA--StrlsgAATDGRAAI 139
                 79***********************************77.67779998754321....222222222222222222222222..12356689999**** PP

                 --HHHHS-HHHHTTS-HHHHHHHHHHHTTT-SSEEEEEEETTTHHHHHHHHHH--EEEEEEE-------..-EEEEEEEEEE..EETTEEEEEEEETTT CS
       ATP11  86 kpLssildleklkelpakeiealWrarhaskeeslcAvipaetYekmlatarkypqFvlPlpreeqeekeegaElhflqwafhepaektstvlfTsLae 184
                 ++L++++d+ k+k+lp+ke++a+Wr+rha+++++lcAvi a+ Y++m+++ark+p+FvlP+p+e +     gaE+h+lqw+f+ + +ktstvlfT+Lae
  CCE26558.1 140 QTLDEMVDVAKIKDLPEKELTAVWRLRHANSPHKLCAVISAASYQTMEDMARKSPHFVLPVPHEGE-----GAEIHLLQWTFD-APSKTSTVLFTQLAE 232
                 ***************************************************************666.....***********8.7899*********** PP

                 TTT-HHHHS-SEEEEEE-TTHHHH-EEEEEEEE-TTSS--HHHHHHHHHHHHHHTT........GGG-.-SHHHHHHHHHHHHHHHT-TT--HHHHH CS
       ATP11 185 YklrgefAqphttlthytdLaeskglVLmrGevtedrglsveeAqlLvlalqrFYg........aeae.ekeeakerekLLedFtkgdeeFkveeLi 272
                 +k+rgefA+phtt+th++dL +++g+VLm+G+ ++d g+  e A++Lvl+lqrFYg          ++ +k +a++r++L+++F +gd++F+ve+L+
  CCE26558.1 233 FKARGEFAKPHTTITHHLDLLKDNGFVLMQGQTMPDGGVAPEAAKWLVLCLQRFYGawegpeaeV-DAvRKARAEARKQLVQWFGAGDSRFSVEKLL 328
                 *************************************************************9743.34599************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2429.06
//
Query:       CCE26559.1  [L=1181]
Description: uncharacterized protein CPUR_00027 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-52  179.1   0.1      4e-52  177.4   0.1    1.9  2  MMS19_N   Dos2-interacting transcription regulator of RNA-Pol
    1.5e-19   70.5   9.4    2.4e-19   69.8   7.4    2.0  2  MMS19_C   RNAPII transcription regulator C-terminal


Domain annotation for each model (and alignments):
>> MMS19_N  Dos2-interacting transcription regulator of RNA-Pol-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4   0.1   4.5e-56     4e-52      10     259 ..      67     328 ..      60     330 .. 0.91
   2 ?   -3.6   0.0      0.73   6.6e+03     225     260 ..     551     585 ..     544     586 .. 0.77

  Alignments for each domain:
  == domain 1  score: 177.4 bits;  conditional E-value: 4.5e-56
     MMS19_N  10 seddkvRakavslLaevlsrlpkkklseeevevLvqFflsrle..dfavlkealkgllaLlrlkkfsaeeavevlralfeevh.vqslaqadRklvyel 105
                 + d + Raka+++L+ +l  l+ ++l+ ++v++Lv+Ff   ++  ++a++ +a++gl++L+++k+f + + +++++++++  + ++ ++ ++R +vyel
  CCE26559.1  67 TPDWTARAKALEFLSVTLYYLKLDTLKPSQVDLLVAFFGAMFDvdHKAGILAAANGLSRLTSMKAFHPRNGKDIIQKVCNLKDdFPRQLSETRLAVYEL 165
                 567789****************99******************9978899*****************************976557*************** PP

     MMS19_N 106 ldallek..hreal.kelge..dflegfvelvdgEkDPrnLllvfellkvllrefdls.alaeelFdvvscYFPitFrpppndpygitredLkaaLrec 198
                 +++l+ +    ++l k+ ge   f++ +++l+  E+DP +L+++f++l+  ++e++ s + +e +++++ +YFPit    ++   g+t e+Lk +Lr+c
  CCE26559.1 166 VQTLMVNpdVAKDLrKHDGEnvAFMKDLLQLCASERDPDCLIVWFDVLRRYSSEYSPSkDTLEGVYNAFKAYFPITLPRTAQ--SGVTPEELKLQLRKC 262
                 *****773457777555555999********************************8877999**************977655..9************** PP

     MMS19_N 199 laasplfaplalplllekLds...tsvsakldaLqtlaacveay..gaeavaehlralwsalkkei 259
                 +++++++a lalp+l+ kLd+     v++k d+L+t++ac+e+y   +e++ ++ + +w++lk+e+
  CCE26559.1 263 FSSTDRLASLALPFLIGKLDQgdgVTVNVKIDVLRTIKACLEEYqdTTESITPYTNRIWTSLKHEV 328
                 ********************962224569***************766889**************98 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.73
     MMS19_N 225 kldaLqtlaacveaygaeavaehlralwsalkkeil 260
                  ++a +tl  +v+ay +e+ ++ +r+  + l++ i+
  CCE26559.1 551 VNEAAKTLHRIVQAY-PESFQSLMRNGTKLLRQSIM 585
                 678888999999999.77888888888888888776 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.05   4.5e+02      35      96 ..     269     324 ..     252     349 .. 0.73
   2 !   69.8   7.4   2.6e-23   2.4e-19      99     418 ..     743    1086 ..     690    1087 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.05
     MMS19_C  35 lfetlvirllnkldlvlksnessaayahailstllkllekkqtdlekeellnsyydrivprl 96 
                 l    ++ l+ kld+   +   + +  + +l+t+ ++le+ q   +++e+++ y++ri  +l
  CCE26559.1 269 LASLALPFLIGKLDQ--GDGV-TVNVKIDVLRTIKACLEEYQ---DTTESITPYTNRIWTSL 324
                 555555566666655..2223.46677799999999999999...66899999999987776 PP

  == domain 2  score: 69.8 bits;  conditional E-value: 2.6e-23
     MMS19_C   99 lvvsaastss........siltddrllevlgriinlivrslssskqqevleevvalfltgdaskkfeplsesasesqkqli......ilftailaal 181 
                  ++v+a ++ s         ++++ r l++++++ n+++ ++s s+q ++  e+ +l l   ++      ++s+s+s+ + +      il+  il al
  CCE26559.1  743 QTVAARAELSlsadftgaEAQQERRYLHLVSELANFVIHEMSESQQATLKIEALSLNLFRGNEI-----DTSSSSSTWNWLthgplnILSLGILEAL 834 
                  33332222223344555599***************************99988887766554444.....334443333333678888********** PP

     MMS19_C  182 rkevkl.pdlsellnelle..llaseaespflrlaylr.llallvNKflkdedlselldellesieeslie....aedsqerkaale...iliwitK 267 
                  r++       s+++++++   ++a++a s   ++ ++r +la+l NK+   e ++++++ l++ +++ l+     ++d++++ +a+e    ++ +  
  CCE26559.1  835 RPSRVAkLYESNVAQRIISdsTSANQAPSDVNSIPVTRsILAILANKHS-IETIDAVMAMLENHLSAALKHaqdsTTDQTSEAHAVEpalSIFVLMG 930 
                  ***55545566666777776666777777777777777799******98.69999999999999999999999995566666666653324555566 PP

     MMS19_C  268 ALvlRghplatelldkLlelLs...edaelgqlvakafgvlvsddevvlskknhanirlLykQrfFstvlpklvegfks.....sdsetkenyLvAL 356 
                  +L+ R++ +       Ll+lL    ++++ g   a++++  v+++   l+k+ +a++r+L+ Q++F  +++ l++++       +d+ +k+n+ +A 
  CCE26559.1  931 GLLRRYSGAKVL---PLLQLLRtapSNSSSGYRLARGLEAMVAPQRC-LTKESFATVRPLWLQKLFVVLIQPLLDAALGndatiTDPLIKTNFSIAV 1023
                  666666655433...45555555559******************877.**************************99877899*************** PP

     MMS19_C  357 shllkhvPkslllpeLptLlPlLlqaLdlpdae.vkastLetlksileespslvsehlssLvp 418 
                    ++kh++ s++  e  ++l + +  L+   a    +++L+++k+il e+++   +h+ sLv+
  CCE26559.1 1024 LCMVKHMSYSIYEAEADKILRISIAVLQNLGAGpDGLAALQVIKDILVEASDKARDHIRSLVK 1086
                  *******************998777775444442459************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 7832.60
//
Query:       CCE26560.1  [L=222]
Description: related to signal peptidase 18 KD subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-53  178.5   0.2      1e-52  178.2   0.2    1.1  1  SPC25     Microsomal signal peptidase 25 kDa subunit (SPC25)
  ------ inclusion threshold ------
       0.17   11.6   0.2        0.3   10.8   0.2    1.4  1  RPN7      26S proteasome subunit RPN7


Domain annotation for each model (and alignments):
>> SPC25  Microsomal signal peptidase 25 kDa subunit (SPC25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.2   0.2   1.1e-56     1e-52       1     160 [.      13     165 ..      13     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 178.2 bits;  conditional E-value: 1.1e-56
       SPC25   1 elKntlDdalkeyltdlgfkeshtltdvrLalGylavaiaavaflydykveFeeskpvlaiavvlYfilsgiltlystfvekntifvgkrktgskriek 99 
                 +lKnt Ddal++yl++l+fk+sh+ltdvrLalGy a+aiaa++f +dyk++Fe++k+++a+av++Y +l++ lt+++  vek+t+++gk ++g+    k
  CCE26560.1  13 DLKNTSDDALPNYLNSLKFKQSHFLTDVRLALGYGAFAIAAACFGWDYKFGFESTKYYTAAAVATYALLNAFLTFWMSSVEKGTVYQGKAPSGE----K 107
                 79*****************************************************************************************996....7 PP

       SPC25 100 itissslkklsptytltvsykdksnkgkslkakeleksvgewFdedGylveeefeqwlakl 160
                 iti++ +kk++pty ltv ++ ks +   ++ k +++s+++wFde G++v ++f++ la+ 
  CCE26560.1 108 ITIRTMTKKNDPTYYLTVVCEGKSGA--PQEIK-VSRSFAKWFDETGRFVVKPFQEFLASS 165
                 ********************665544..44444.89*********************9986 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   3.4e-05       0.3     122     166 ..      42      87 ..      10      90 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.4e-05
                 HHHHTT-HHHHHHHHC.TS-GGGT.TTT--HHHHHHHHHHHHHHH- CS
        RPN7 122 allairkfkeAaelll.dilstftskellsyedlavyavlcalatl 166
                 ++l ++ f+ Aa ++  d ++ f+s+++ +   +a+ya+l a +t+
  CCE26560.1  42 LALGYGAFAIAAACFGwDYKFGFESTKYYTAAAVATYALLNAFLTF 87 
                 57889**********7369*********************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1655.04
//
Query:       CCE26561.1  [L=260]
Description: uncharacterized protein CPUR_00029 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-55  186.6   0.8    4.7e-55  185.9   0.8    1.4  1  EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like


Domain annotation for each model (and alignments):
>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.9   0.8   2.6e-59   4.7e-55       3     170 .]      10     201 ..       8     201 .. 0.98

  Alignments for each domain:
  == domain 1  score: 185.9 bits;  conditional E-value: 2.6e-59
  EMC3_TMCO1   3 vldplirdwvllPivivillvgiltgllsellqkllidkkkmekeqkrekelqkrarelqkngdklklkklekrqeelmedqsem.............. 87 
                 + dp++ +w+l+Pi+iv++l+g+l++++s l+   +  k k++++ +re++ + r ++l++n++ l++k++e+r+e+l +  +++              
  CCE26561.1  10 HRDPQLFYWILIPITIVMILTGVLRHYASVLMAAAP--K-KLDAIGMREQRSLGRGIALRSNHHVLSQKAFEDRREYLSTGYESGaflkepdrkgqppa 105
                 679*******************************97..5.5********************************************************** PP

  EMC3_TMCO1  88 ...........mmdqmkpmivtmipqiliffwlnsffsgfvvaklpfpltgrfksllqrgl..esldvrfvssiswYflcsfglsqiirklLgean 170
                            mm +mk++++++ip++li++w+n+ffsg+v++klpfp+t++fks+lq g+  ++ d r++ssiswYflc fgl+ ++  lLg +n
  CCE26561.1 106 nplsdpsqmegMMGMMKNNMAMIIPNTLIMSWINAFFSGYVIMKLPFPITIKFKSMLQAGVqtKDMDPRWMSSISWYFLCIFGLQFVYVFLLGSDN 201
                 *************************************************************9999***************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1856.70
//
Query:       CCE26562.1  [L=199]
Description: related to RPC25-DNA-direcred RNA polymerase III,25 KD subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-32  113.1   0.9    1.2e-31  109.6   0.9    2.1  1  RNA_pol_Rbc25  RNA polymerase III subunit Rpc25
    4.3e-14   52.6   0.0    6.6e-14   52.0   0.0    1.3  1  SHS2_Rpb7-N    SHS2 domain found in N terminus of Rpb7p/Rpc25


Domain annotation for each model (and alignments):
>> RNA_pol_Rbc25  RNA polymerase III subunit Rpc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.9   1.3e-35   1.2e-31       1     129 []      85     196 ..      85     196 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 1.3e-35
                    -STTSEEEEEEEEEETTCEEEEBTTBSEEEEECCCCSTTEEEECCCTCEEEEESSSEEEEE-TTSEEEEEEEEEEE-------HHHHHCHHHCCTS CS
  RNA_pol_Rbc25   1 PfvgevltgkiksstregikvslgffddifvpkelLfepsefdeeeqawvweveeeeelyldvgeeirfrveeeifvdvkpkspkeaeleeeease 96 
                    Pf+gev+ ++i+sst  gi+++++ffddif+p+e+L++++e++++eq w+w++ +  +l++d+ e +rf+v +e+++d++p  p            
     CCE26562.1  85 PFKGEVMLARIRSSTPAGINLRTDFFDDIFIPYEELPQGAEYNHSEQLWIWNL-DGDRLFYDNHEMVRFQVIDEEWHDQTPIGPT----------- 168
                    9****************************************************.999************************9998........... PP

                    -SS--SSTTS--S-SCEEEEEB-STTTCECGCC CS
  RNA_pol_Rbc25  97 eeaeeeeeekekkspyevlgsiqedGlGlvsWw 129
                         ++e+  +k+py+v+gs++++GlG++ Ww
     CCE26562.1 169 -----QSEDTPTKTPYKVKGSMAREGLGVCLWW 196
                    .....45667899******************** PP

>> SHS2_Rpb7-N  SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   7.4e-18   6.6e-14       2      70 .]      15      83 ..      14      83 .. 0.99

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 7.4e-18
                 EEEEE-GGGTTSTHHHHHHHHHHHHHTTBEETTTEEEEEEEEEEEECCEEE-TTTSSEEEEEEEEEEEE CS
  SHS2_Rpb7-N  2 dtvrlePsylgstledallerllekyegkvvpslGvivavldiaeysegkvlggsGsvyvrVtfralvF 70
                 d v+++P++++++   a+ + ++ ky +kv++++G++++ +d++ +seg + +g+G v v+V+fr++vF
   CCE26562.1 15 DLVQIAPEDFSKHSIVAIQDNINAKYSNKVIQKIGLCICLYDLLWSSEGLIGHGTGLVNVNVEFRMIVF 83
                 89******************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1500.89
//
Query:       CCE26563.1  [L=638]
Description: uncharacterized protein CPUR_00031 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-07   30.5   0.0    8.4e-07   28.7   0.0    2.0  1  NUFIP1          Nuclear fragile X mental retardation-interact
  ------ inclusion threshold ------
       0.04   14.0   6.8      0.071   13.2   6.8    1.4  1  zf_CCCH_4       Zinc finger domain
       0.18   11.7   5.8       0.33   10.9   5.8    1.4  1  zf-CCCH         Zinc finger C-x8-C-x5-C-x3-H type (and simila
        4.6    7.2  10.8        4.1    7.3   6.7    2.7  2  Nucleocapsid-N  Nucleocapsid protein N


Domain annotation for each model (and alignments):
>> NUFIP1  Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   1.9e-10   8.4e-07      20      49 ..     347     376 ..     341     380 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.9e-10
      NUFIP1  20 eIakWreERkKnyPtkaniekkkkkeeekk 49 
                 ++ +  +ER+KnyPtka+++ kk ++ ++k
  CCE26563.1 347 DVSAFLAERRKNYPTKARVDAKKAAQATQK 376
                 788999*****************9998876 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   6.8   1.6e-05     0.071       1      19 []     454     473 ..     454     473 .. 0.99

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
   zf_CCCH_4   1 Ckfflq.GtCkkGdkCrFaH 19 
                 Ck++ + GtC k  kCrF H
  CCE26563.1 454 CKYYSTgGTCGKKGKCRFVH 473
                 *******************9 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   5.8   7.3e-05      0.33       6      27 .]     454     475 ..     451     475 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.3e-05
                 BCHHHHHS--TTGGG-SSBSCS CS
     zf-CCCH   6 CrffmrtGyCkyGdrCkFaHgq 27 
                 C++++ +G+C   ++C+F H++
  CCE26563.1 454 CKYYSTGGTCGKKGKCRFVHDP 475
                 ********************85 PP

>> Nucleocapsid-N  Nucleocapsid protein N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.7    0.0009       4.1      44      94 ..     239     290 ..     222     295 .. 0.86
   2 ?    0.1   0.1      0.15   6.6e+02      93     131 ..     570     608 ..     540     628 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0009
  Nucleocapsid-N  44 mfnrrrnnngnqn.rgrqnrqrvqnnnrgnirnrqnngqrgnrrqynqpspn 94 
                        +  n  g q  rgr n +r ++  rg    r+nn q+g+ r+ n+  p 
      CCE26563.1 239 SAAKTDNHYGHQSrRGRGNGHRDRDSARGRGGHRNNNSQHGKPRNNNHAKPH 290
                     556677888988637******************************9998875 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.15
  Nucleocapsid-N  93 pnvpfeqqllmmanetayaatyppemqnvaptklvkiak 131
                     p  p+++++   +   +y +t pp +q ++ +  v  a 
      CCE26563.1 570 PASPLKKKMSKRSGRKSYKSTRPPSVQTISASLAVPSAD 608
                     6778888888888899999******99998877666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1496  (0.0834402); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 4120.21
//
Query:       CCE26564.1  [L=349]
Description: uncharacterized protein CPUR_00032 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-10   41.9  25.0      2e-10   41.1   9.6    2.5  2  SPT2      SPT2 chromatin protein


Domain annotation for each model (and alignments):
>> SPT2  SPT2 chromatin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   6.6    0.0003       5.4      10      34 ..     257     282 ..     251     292 .. 0.77
   2 !   41.1   9.6   1.1e-14     2e-10      60     111 .]     288     338 ..     282     338 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0003
        SPT2  10 krrseeeeedsdlddfie.ddeeeee 34 
                 k+++ee+++d++lddfie ddee++ 
  CCE26564.1 257 KAKREEDDYDEELDDFIEyDDEEDDA 282
                 457889************87777654 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 1.1e-14
        SPT2  60 daesddddrdMEangaeieeEErrSariArkEDeeEeerekreeeekkkrkk 111
                  + sd  ++dMEa+ ++i +EErr++ i+r+ED eEe++ek  + +k++rk+
  CCE26564.1 288 GYASDG-SSDMEAGLEDIDHEERRAEYIGRREDLEEERLEKTLKSAKEERKR 338
                 455555.69*****************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2430.03
//
Query:       CCE26565.1  [L=123]
Description: probable ribosomal protein P2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-26   91.0   9.9    6.7e-26   90.7   9.9    1.1  1  Ribosomal_60s  60s Acidic ribosomal protein
  ------ inclusion threshold ------
       0.13   12.2   0.1       0.34   10.9   0.0    1.7  2  UBA_6          UBA-like domain


Domain annotation for each model (and alignments):
>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   9.9   7.5e-30   6.7e-26       1      88 []      30     122 ..      30     122 .. 0.83

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 7.5e-30
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--SS--STTT CS
  Ribosomal_60s   1 eptaenikkvlkaagveveaarvkllvkalegkdieellangaakla.....aaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedddmGfgLF 88 
                    +p+ae+ik+vl+++g+e++a r+  l+++legkdi el+a+g++kla     +a++aaa +aaa++aaaa++  +++eee+Ee+d+dmGfgLF
     CCE26565.1  30 SPSAEDIKTVLSSVGIEADADRLTKLISELEGKDISELIAAGSEKLAsvpsgGAGGAAAGGAAAGGAAAADAPVEEKEEEKEESDEDMGFGLF 122
                    59************************************************98555555555555555555555555555558*********** PP

>> UBA_6  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.8e-05      0.34      14      34 ..      32      52 ..      32      59 .. 0.85
   2 ?   -2.4   0.0      0.52   4.7e+03      36      42 .]      65      71 ..      64      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.8e-05
       UBA_6 14 seeqvqavLekLGpeadedkv 34
                s e++++vL+ +G ead d++
  CCE26565.1 32 SAEDIKTVLSSVGIEADADRL 52
                6799***************85 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.52
       UBA_6 36 sELIklG 42
                sELI +G
  CCE26565.1 65 SELIAAG 71
                8***877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 961.62
//
Query:       CCE26566.1  [L=330]
Description: uncharacterized protein CPUR_00034 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.03   14.6   0.1      0.052   13.8   0.1    1.4  1  Shisa         Wnt and FGF inhibitory regulator
       0.15   11.9   0.2       0.29   10.9   0.2    1.5  1  Adeno_E3_CR2  Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> Shisa  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   5.8e-06     0.052      82     176 ..     139     239 ..     109     253 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.8e-06
       Shisa  82 iyvpvlivktifivfvivgvvvivcccgclkkkqrekr..pgrenlssalaev.gpivte..ttsattvvhsrysepqqssssssypgatnqgyqpvpv 175
                 +  ++ +v+ i   +v ++++ ++ +  c +k  r++r  ++r  +s+ + +  ++++    t++ +++v+ r s + q +s ++  + ++q  +++p+
  CCE26566.1 139 LWNTITLVTGICATLVSCIALGVLFMWICRRKHHRRPRkdSHRH-ASTTKKSLhRHTKSGasTQTHELIVPERPSPTWQLASYRAMSHKEQQAWSSSPT 236
                 56678899999999999999999999999999999999643322.22222222222222256999999******9999999999888888888888887 PP

       Shisa 176 ..q 176
                    
  CCE26566.1 237 wtR 239
                 541 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   3.2e-05      0.29       7      35 ..     144     174 ..     141     178 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.2e-05
  Adeno_E3_CR2   7 aIivaVvvGla.iIii.cmlyYaCcYrkhra 35 
                   + ++++ + l+  I++ ++++++C+++ hr+
    CCE26566.1 144 TLVTGICATLVsCIALgVLFMWICRRKHHRR 174
                   4444444444313333467889****99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2404.48
//
Query:       CCE26567.1  [L=590]
Description: related to glucosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-128  428.9  27.9      4e-81  273.4  10.4    2.2  2  Alg6_Alg8  ALG6, ALG8 glycosyltransferase family


Domain annotation for each model (and alignments):
>> Alg6_Alg8  ALG6, ALG8 glycosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.4  10.4   2.3e-85     4e-81       4     232 ..      68     298 ..      61     310 .. 0.92
   2 !  161.2   9.5   2.4e-51   4.2e-47     234     482 ..     341     566 ..     323     568 .. 0.85

  Alignments for each domain:
  == domain 1  score: 273.4 bits;  conditional E-value: 2.3e-85
   Alg6_Alg8   4 lklll..........ipmyrStDFEvqRnWlaiThslplseWytedlseWtLDYPPlfAYfeyllskvakkvldpemlalessrgyesestklFqRltV 92 
                 ++++           +pm+  +D+E+qR+W++iT++lp+s+Wy+ dl++W+LDYPPl+AY++++++k++ ++ +p+++al ssrg +++++k+F+R+tV
  CCE26567.1  68 FRWAAglwgysgfqrPPMF--GDYEAQRHWMEITTQLPISQWYFHDLQWWGLDYPPLTAYHSWVMGKIGGRI-EPAWFALFSSRGSDDPTLKIFMRATV 163
                 5555566677777779***..************************************************777.************************** PP

   Alg6_Alg8  93 ivsdlllfipavlllvekakkks..kkkkrlvllllillspgllliDhiHFQYNgvllGllllsiaallkkkdlllgallFvllLnfKqialylApayf 189
                 +vs++++++pav++++++ ++ s  ++ ++ v+l++il++p+ +l+Dh+HFQYN+v+lGl+l+si+++l++++  ++a++Fv++L fKq+aly+A  +f
  CCE26567.1 164 LVSEYIIYVPAVVVFARRYSRLSgvSTWTSSVALVAILMQPATMLVDHVHFQYNTVMLGLVLASINSMLAERYK-WAAVFFVAALGFKQMALYYAFSVF 261
                 ***************8664444456899999*******************************************.5*********************** PP

   Alg6_Alg8 190 vylLrkyclkkskkklkvslkrllklgvvvlavfallfgPfla 232
                 +ylL+k+++       +  l+rl+ +g+v+la+fa+l++P++ 
  CCE26567.1 262 AYLLGKCFWP------RLVLVRLIGIGLVTLASFAALVLPLIL 298
                 *******773......5689********************983 PP

  == domain 2  score: 161.2 bits;  conditional E-value: 2.4e-51
   Alg6_Alg8 234 geqlkqvlsRlFPfkRGLfedyvApNfWalynvvdkvlevvlkkaevasltrglvqdvsflvlpeilpkltllltllailpslvklllkpskklfllal 332
                 +eq+ q+++R+FPf+RGLfed+vA NfW+++nvv+k+++                      +  + lpk++l +tlla+lp  + l++kp+kkl+ la+
  CCE26567.1 341 VEQMIQMVHRVFPFARGLFEDKVA-NFWCALNVVVKLRK----------------------YPADLLPKAALGATLLAVLPPNIVLFFKPEKKLLPLAF 416
                 68**********************.*************9......................8999********************************** PP

   Alg6_Alg8 333 vlcalsfFlfsfhVHEKaiLlvllpltllalesre....dlslvlllsvvgtfslfPLlfkdgellikvvltllwlllll...lslkklvkkslkkkkk 424
                 +++a++fFlfs++VHEK++Ll+l+p+tll++ ++     + s+v +++++g++++fPLl + +++++++vltllw++l++        ++  s++ + +
  CCE26567.1 417 ATTAWGFFLFSYQVHEKSVLLPLMPMTLLLAGKQGlhgdTRSWVGFANLLGVWTMFPLLSRVDLAVPYTVLTLLWAYLVGlppI--CWTAPFSEAGSVP 513
                 *******************************8876667688999999****************************999996542..3333333223333 PP

   Alg6_Alg8 425 kvlldrleklyllsllallvllvllellvlkkpperlpflplllisvycsvgvfvlfl 482
                 k   + ++ +  + ++ +l+++  ++++v  +pp   p+l++++++ + ++g+++++l
  CCE26567.1 514 KQ--WATALIQGAFYVFMLLWH-GVHAFV--APPLGKPDLWVVANVGVGCAGFMLCYL 566
                 33..344447777778788888.99**99..7899*************6666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4418.35
//
Query:       CCE26568.1  [L=485]
Description: related to PalC protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-09   34.5   0.0    1.3e-08   34.1   0.0    1.2  1  BRO1      BRO1-like domain
  ------ inclusion threshold ------
      0.088   11.9   0.1        2.6    7.0   0.0    2.2  2  DUF5355   Family of unknown function (DUF5355)


Domain annotation for each model (and alignments):
>> BRO1  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.5e-12   1.3e-08      89     313 ..      97     358 ..      82     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.5e-12
                 XXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...............XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX.... CS
        BRO1  89 veFtWydaf.......ssskkvtqsslafEkasvLFniaalysqlaasqnr.............stdeglkrackyfqqAAgvfqylkenflhapteee 167
                  + tW +++       +++++v+  sl++E + vL  +a  y+ +a  + +             + +  + +a + +  AA +++yl  +  h ++ ++
  CCE26568.1  97 PSMTWRPTLsedivpgRERSRVKIDSLEYEIFFVLTTLAYAYTLMARTTLQplyatstdflpdkERTTAITAATRQLLDAASIYDYLFRRSQHMSSPAP 195
                 5789************77899*************************988778899999****9988889******************988888877799 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXX.................XXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXX CS
        BRO1 168 sedlspetlkaLeklmlAqAqecflekaik........dnkkds.................liaKlaaqvaelYeealealkkselidekeevlkklld 241
                   d+ p t+kaL+ ++lA A  + + k            nk  +                 l a+l+  +a++ ++al++l++s  + +     k+ + 
  CCE26568.1 196 CVDVAPTTIKALSLVCLADATLLAVLKDDPypaavaqgRNK--TdkewmfkspdmprvrahLFARLCLAAADHASTALSLLQSSGSSGS---LDKSKVT 289
                 9*******************999999973245555544233..145888899999999999********************88877666...4444489 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXX CS
        BRO1 242 ksWikhvqvKashfkAlaqyrqalaaeeakkyGeeiarlqkAlellkealkskkaeelledlkglkdvveek 313
                    + +++   +  +A a+ + +++ae   + +e i+ l+  l++l    k +k++    +l++l++ ++e+
  CCE26568.1 290 PALLRYLEDLRRTSRAKACRFFGVDAEIGGQTAEGIGWLRVGLHELGVEAKDQKKG---FSLSRLRQDMSER 358
                 9***************************************9988876442333222...3444444444444 PP

>> DUF5355  Family of unknown function (DUF5355)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0    0.0066        59       2      34 ..     122     154 ..     121     192 .. 0.89
   2 ?    7.0   0.0   0.00029       2.6     264     319 ..     384     435 ..     381     442 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0066
     DUF5355   2 sleneleivlidialiyqelalellneaiesse 34 
                 sle e+  vl  +a+ y+ +a  +l+ ++ +s+
  CCE26568.1 122 SLEYEIFFVLTTLAYAYTLMARTTLQPLYATST 154
                 6999**********************9997444 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00029
     DUF5355 264 ilLrlkytkeNdnlkFdpiekddikldslwPrGkkidlsgikwvfdpnelkeeeee 319
                  lL+ k++k Nd+++ + i + ++ l  ++P+G+  ++++ik+ ++p++l+ ee +
  CCE26568.1 384 QLLDVKWNKINDTMNTQAIPHINSLL-TKMPSGR--EVHTIKP-YEPSVLDREEVN 435
                 5899****************966555.566***8..5899***.***999887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3766.42
//
Query:       CCE26569.1  [L=127]
Description: uncharacterized protein CPUR_00037 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.075   13.8   0.8       0.16   12.7   0.8    1.5  1  NpwBP     mRNA biogenesis factor


Domain annotation for each model (and alignments):
>> NpwBP  mRNA biogenesis factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.8     9e-06      0.16       5      25 ..      37      57 ..      36      84 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9e-06
       NpwBP  5 iYYdPvlNPlGkpPpgmPyle 25
                +YY+  +NP   pPp+mP  e
  CCE26569.1 37 VYYESCFNPCREPPPEMPFCE 57
                8**************997544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 967.25
//
Query:       CCE26570.1  [L=276]
Description: probable succinate dehydrogenase (ubiquinone) iron-sulfur protein precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-34  116.3   0.0      1e-33  115.6   0.0    1.3  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain
    1.2e-08   35.3   6.0    1.2e-08   35.3   6.0    2.3  3  Fer4_17   4Fe-4S dicluster domain
    3.1e-08   33.6   2.8    3.1e-08   33.6   2.8    2.0  2  Fer4_10   4Fe-4S dicluster domain
    8.1e-08   32.6   7.8    8.1e-08   32.6   7.8    2.4  2  Fer4_8    4Fe-4S dicluster domain
    0.00099   19.0   3.1     0.0012   18.8   0.3    2.2  2  Fer2      2Fe-2S iron-sulfur cluster binding domain
     0.0019   18.8   4.4     0.0019   18.8   4.4    2.5  2  Fer4_7    4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.017   15.3   0.4       0.45   10.7   0.1    2.3  2  Fer4_18   4Fe-4S dicluster domain
       0.14   12.3  11.7        1.2    9.4   9.7    2.9  4  Fer4_9    4Fe-4S dicluster domain
        0.7   10.9  10.2        1.8    9.6   1.2    3.0  3  Fer4_16   4Fe-4S double cluster binding domain


Domain annotation for each model (and alignments):
>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.0     5e-37     1e-33       1     108 [.      45     151 ..      45     152 .. 0.96

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 5e-37
      Fer2_3   1 tlkvkRfdprrdrgkqkvqeyeveae.eedtvldaLlkikeevdptlafrasCregiCGscavainGkptlaCtatikdlakqkseieleplpkfpvir 98 
                 t++v+R++p+++++k+k+q+y+++ +  + +vldaL +ik+e+dptl+fr+sCregiCGsca++inG++tlaC  +i +  +++  ++l plp+  v++
  CCE26570.1  45 TFQVYRWNPDSPTEKPKMQSYTIDLNkTGPMVLDALVRIKNELDPTLTFRRSCREGICGSCAMNINGQNTLACLCRIPAESSSD--VKLYPLPHTYVVK 141
                 699*********************99899*************************************************988765..************* PP

      Fer2_3  99 DLvvDideml 108
                 DLv D ++++
  CCE26570.1 142 DLVPDLTHFY 151
                 *****99986 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.9   7.7e+03      15      32 ..      46      63 ..      43      76 .. 0.70
   2 ?   -4.3   2.8         9   1.8e+04       8      14 ..     102     107 ..      95     120 .. 0.61
   3 !   35.3   6.0   6.2e-12   1.2e-08       1      61 []     188     261 ..     188     261 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.9
     Fer4_17 15 yeaydnepkkllraaklg 32
                ++ y+++p+++ ++ k++
  CCE26570.1 46 FQVYRWNPDSPTEKPKMQ 63
                677888888888776664 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 9
     Fer4_17   8 ClpeCps 14 
                 C   C +
  CCE26570.1 102 CGS-CAM 107
                 333.443 PP

  == domain 3  score: 35.3 bits;  conditional E-value: 6.2e-12
     Fer4_17   1 rCiqCgyClpeCpsyeaydne...pkkllraakl..........glleeaekeekaslCieCgeCerkCPqgld 61 
                 +Ci C++C  +Cpsy+++++e   p+ ll+ +++          ++  + e+++   +C+++ +C+r+CP+gl+
  CCE26570.1 188 ECILCACCSTSCPSYWWNSEEylgPAILLQSYRWladsrderkgERRANLENSMSLYRCHTILNCTRACPKGLN 261
                 6****************999766688888888778877766553333334555899***************996 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2       1.1   2.2e+03      43      52 ..      95     106 ..      82     108 .. 0.70
   2 !   33.6   2.8   1.6e-11   3.1e-08       8      56 .]     188     257 ..     181     257 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.1
     Fer4_10  43 ekCtg..cgaCv 52 
                  +C +  cg+C+
  CCE26570.1  95 RSCREgiCGSCA 106
                 566666677774 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 1.6e-11
     Fer4_10   8 tCirCgkCvkaCPadl.....................tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                  Ci C+ C ++CP+++                     ++++ kge+  + +++  +++C+++ +C++aCP
  CCE26570.1 188 ECILCACCSTSCPSYWwnseeylgpaillqsyrwladSRDERKGERRANLENSMSLYRCHTILNCTRACP 257
                 5********************************************************************9 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2  10.4   9.5e-05      0.19      34      63 ..     163     201 ..      95     203 .. 0.52
   2 !   32.6   7.8   4.1e-11   8.1e-08       2      64 ..     186     259 ..     185     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.5e-05
      Fer4_8  34 e.........dvqeeqvleeeealwsCttcgaCtevCpv 63 
                           + q+++ +++ ++l++C  c +C++ Cp 
  CCE26570.1 163 RdtpspdgkeYRQSKEDRKKLDGLYECILCACCSTSCPS 201
                 02233344444555555556799***************5 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 4.1e-11
      Fer4_8   2 lekCieCgaCqsaCp.............vlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvg 64 
                 l++Ci C +C ++Cp             +l ++ ++l d+r+e+++ +++   le+  +l++C+t  +Ct++Cp+g
  CCE26570.1 186 LYECILCACCSTSCPsywwnseeylgpaILLQSYRWLADSRDERKG-ERRAN-LENSMSLYRCHTILNCTRACPKG 259
                 578***********98888888888887777777*********999.44443.356889***************98 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.3   5.9e-07    0.0012       9      76 ..      66     120 ..      59     124 .. 0.72
   2 ?   -0.1   0.2      0.44   8.8e+02      15      45 ..     170     197 ..     161     213 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.9e-07
                 EEEEETTTHBHHHHHH....H.TTTTTSTTSSSSSSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGSE CS
        Fer2   9 evevadgettlldaae....e.nggidipysCggggCgtClvevlegevqsdetelegeeldegklrlaCqti 76 
                 +++ ++++ ++lda+     e ++ + ++ sC++g Cg+C+  ++            g++       laC ++
  CCE26570.1  66 TIDLNKTGPMVLDALVriknElDPTLTFRRSCREGICGSCAMNIN------------GQN------TLACLCR 120
                 566666666677777655544456778999***********9999............666......3777766 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.44
                 TTHBHHHHHHHTTTTTSTTSSSSSSSSTTEE CS
        Fer2  15 gettlldaaeenggidipysCggggCgtClv 45 
                 g+    +  e+ +++d  y+C    C+ C +
  CCE26570.1 170 GKE-YRQSKEDRKKLDGLYECI--LCACCST 197
                 555.555555555666667776..4666654 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.7       1.9   3.7e+03      41      44 ..     102     105 ..      43     108 .. 0.66
   2 !   18.8   4.4   9.4e-07    0.0019       2      51 ..     189     259 ..     188     260 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.9
      Fer4_7  41 CgaC 44 
                 Cg+C
  CCE26570.1 102 CGSC 105
                 4444 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 9.4e-07
      Fer4_7   2 CigCgaCvaaCpvkaielde.................eenekgtekv....eidpekClgCgaCvavCPtg 51 
                 Ci C  C   Cp+++ + +e                 +++ kg +++     ++  +C +  +C ++CP+g
  CCE26570.1 189 CILCACCSTSCPSYWWNSEEylgpaillqsyrwladsRDERKGERRAnlenSMSLYRCHTILNCTRACPKG 259
                 ************99999775333333333333333333444455555333355566899999*******98 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00022      0.45      45      73 ..     173     201 ..     150     203 .. 0.83
   2 ?    2.2   0.0       0.1     2e+02      43      76 ..     228     261 ..     220     268 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00022
     Fer4_18  45 kalkekeerkekgagdcidcescvkvcPt 73 
                   +++++++k +g  +ci c  c + cP 
  CCE26570.1 173 YRQSKEDRKKLDGLYECILCACCSTSCPS 201
                 455667788889999*************6 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.1
     Fer4_18  43 ekkalkekeerkekgagdcidcescvkvcPtgid 76 
                 e+k  ++ +++++ +   c +   c + cP g++
  CCE26570.1 228 ERKGERRANLENSMSLYRCHTILNCTRACPKGLN 261
                 5556666677777788889999999999999875 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.44   8.7e+02      35      43 ..      96     106 ..      54     114 .. 0.74
   2 ?    5.3   5.2     0.011        22      33      48 ..     182     201 ..     165     204 .. 0.64
   3 ?    9.4   9.7   0.00059       1.2       1      49 [.     188     259 ..     188     260 .. 0.86
   4 ?    6.7   0.5    0.0042       8.4       5      20 ..     246     264 ..     244     272 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.44
      Fer4_9  35 aCig..CgaCv 43 
                 +C +  Cg+C+
  CCE26570.1  96 SCREgiCGSCA 106
                 56555577775 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.011
      Fer4_9  33 e....eaCigCgaCveaCpk 48 
                 +     +Ci C  C   Cp+
  CCE26570.1 182 KldglYECILCACCSTSCPS 201
                 14444568888888888885 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00059
      Fer4_9   1 kCtgCgaCveaCpagvv.vedaaerkarlraase......................eaCigCgaCveaCpkg 49 
                 +C+ C  C ++Cp+  + +e+  +  + l+ +++                       +C++   C+ aCpkg
  CCE26570.1 188 ECILCACCSTSCPSYWWnSEEYLGPAILLQSYRWladsrderkgerranlensmslYRCHTILNCTRACPKG 259
                 5***********877664677778888888888899999999999999**99999888998899******97 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0042
      Fer4_9   5 Cga...CveaCpagvvved 20 
                 C++   C++aCp+g++ ++
  CCE26570.1 246 CHTilnCTRACPKGLNPGK 264
                 5444447777777776555 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.9       5.5   1.1e+04       5       9 ..     102     106 ..      94     108 .. 0.65
   2 ?    9.6   1.2    0.0009       1.8      34      65 ..     169     200 ..     151     203 .. 0.77
   3 ?    6.5   0.0    0.0082        16       1      15 [.     245     259 ..     215     275 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.5
     Fer4_16   5 CgkCa 9  
                 Cg Ca
  CCE26570.1 102 CGSCA 106
                 66665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0009
     Fer4_16  34 ntaekkdlaedeekckkqeaitgCdiCqdvCP 65 
                   +e ++ +ed++k +  ++++ C+ C + CP
  CCE26570.1 169 DGKEYRQSKEDRKKLDGLYECILCACCSTSCP 200
                 456677777777777777999**********9 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0082
     Fer4_16   1 rCgtCgkCaevCPtn 15 
                 rC+t  +C+ +CP +
  CCE26570.1 245 RCHTILNCTRACPKG 259
                 355555666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1929.99
//
Query:       CCE26571.1  [L=401]
Description: related to PTC7-2C protein phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-08   34.7   0.1    6.8e-08   32.6   0.1    1.9  2  SpoIIE    Stage II sporulation protein E (SpoIIE)
    5.5e-05   22.9   0.9    0.00011   22.0   0.9    1.5  1  PP2C_2    Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   7.6e-12   6.8e-08       3     138 ..     106     274 ..     104     298 .. 0.87
   2 ?   -0.8   0.0      0.14   1.2e+03     167     190 ..     364     388 ..     337     391 .. 0.61

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 7.6e-12
                 TEEEEEEEECSS....SSHHHHHHHHHHHHHHHHHHHTTTS.......HHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEE CS
      SpoIIE   3 grlalvvgDvvG....hGleAalimgllrsalrelatagle.......paevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvr 90 
                 g +a++v+D+vG     G++ a ++  l+  + + a+             ++++  ++al++d   ++ + Ta+++v    +g+l +an+G++  l +r
  CCE26571.1 106 GCVAFGVADGVGgwvdSGVDPADFAHGLCDFMAASAYTYDAvqnghptARRIMQTGYDALCKDGSVQAGGSTACVGVA-APDGTLDVANLGDSGFLQFR 203
                 789*************99999999999999998888544445889988999*********99999999*********5.55677*************** PP

                 TTS...TEEEEE--SS--..TTTSSS..................T-EEEEEEE--TTEEEEEESCCCCSSS CS
      SpoIIE  91 pdg...gtklllastglp..lGilpe..................adyetaelelepgdtlllyTDGvtEar 138
                  +        ++++++ p  l++++                   +d+++ + +++ gd+l+++TDGv+++ 
  CCE26571.1 204 LNAvnaYSDPQTHDFNTPfqLSLVSRrraalmavfggtqlcdfpRDADVSQHQVRHGDILMFATDGVLDNL 274
                 *887665566677777888888888899999999999*******************************986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.14
                 HHHHHHHHH...HTTSSSSS-EEEEEE CS
      SpoIIE 167 dalveelle...lgsgeleDDitllvl 190
                 +++++ + +   +  g++ DDi+++++
  CCE26571.1 364 KEVLKYFPRepwR--GGKVDDICVVIA 388
                 4444444444322..5899*****987 PP

>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.9   1.2e-08   0.00011      13     183 ..      94     278 ..      83     300 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.2e-08
      PP2C_2  13 qDala.vwtdsggsll.aVaDGaGSakrSerG....ariaveavvealaelleseeeeeeallraleaailadvlkeeaeaqdaelkdyatTllaavvt 105
                  Da++ +++++ g ++  VaDG+G    S++     a+ ++++++    ++ + ++  + +++r ++++ +       a  +d ++++ ++T  ++v++
  CCE26571.1  94 HDAFFvSRVQDTGCVAfGVADGVGGWVDSGVDpadfAHGLCDFMAASAYTYDAVQNG-HPTARR-IMQTGY------DALCKDGSVQAGGSTACVGVAA 184
                 699997777777777766******976666655466666777665555544433333.344555.555555......2777899*************99 PP

      PP2C_2 106 pde.ivalqiGDGaivvrdrdgevqllgepdsgeyanqtt.fltsedaeeel................rirrlkledgdalllmTDGlanslrdee 183
                 pd+ + ++++GD++  ++ r ++v++ ++p+++++   +  +l s+   + l                 +   +++ gd l+ +TDG+ ++l +++
  CCE26571.1 185 PDGtLDVANLGDSGF-LQFRLNAVNAYSDPQTHDFNTPFQlSLVSRRRAA-LmavfggtqlcdfprdaDVSQHQVRHGDILMFATDGVLDNLFRHD 278
                 866377*********.589***************9887441333333333.257889999999999887888888889999999***998887443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2908.85
//
Query:       CCE26572.1  [L=322]
Description: related to PET8 protein, member of the mitochondrial carrier (MCF) family [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-44  148.5   7.4    1.5e-19   69.7   0.7    4.0  3  Mito_carr       Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.035   13.7  15.9      0.051   13.2  15.9    1.2  1  SR-25           Nuclear RNA-splicing-associated protein
       0.07   12.8   1.2      0.088   12.5   1.2    1.2  1  CCDC106         Coiled-coil domain-containing protein 106
      0.098   12.8   0.5       0.17   12.0   0.5    1.3  1  Transposase_24  Plant transposase (Ptta/En/Spm family)
       0.21   12.3   9.7       0.39   11.4   9.7    1.4  1  IMUP            Immortalisation up-regulated protein
        1.2    9.4   5.2          5    7.4   5.2    2.2  1  DUF5470         Family of unknown function (DUF5470)


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.4   8.3e-16   2.5e-12       9      94 ..       4      80 ..       1      83 [. 0.88
   2 !   32.6   0.0   1.9e-11   5.7e-08       7      92 ..      90     202 ..      86     207 .. 0.81
   3 !   69.7   0.7     5e-23   1.5e-19      10      95 ..     228     310 ..     222     312 .. 0.94

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 8.3e-16
                HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr  9 llaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94
                 +aG+la+ +  ++++Pld++Ktr+q+q   ++++ ++              lrgly+G++  +l + pas+l f++ye+ k+++ 
  CCE26572.1  4 YIAGALAAFTVDVLVYPLDTIKTRFQSQDYVTTYASNK---------QNALALRGLYQGIGSVVLATLPASGLFFSTYEQAKTVIG 80
                69**************************9998874433.........233468*****************************9986 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 1.9e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH...............CCCSSTTTSCSS.....................HHHHHHHHH.HHHHHHGGGTTH CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqt...............qkksskksksaa.....................ildvlkkiy.keeGlrglyrGl 68 
                  +  a+++a +++ lv +P +v+K   q+               +          +                      l++++++  k+   r l+ G+
  CCE26572.1  90 VHSSASAVAEMASCLVLAPAEVIKQNAQMlrensgsssssssssS----------PssssssssakaklsgwaqnstSLQAFRQLAgKDSSRRRLFTGY 178
                 567799***********************7777766665555441..........044444555667889999*************55666699***** PP

                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  69 lpnllrvapasalkfvlyetlkrl 92 
                 ++ + r+ p +al+f ++e+l+ +
  CCE26572.1 179 TALVARNLPFTALQFPIFEQLRSW 202
                 ********************9987 PP

  == domain 3  score: 69.7 bits;  conditional E-value: 5e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr  10 laGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +++g agava+++ttP dvvKtr+++ ++++ +++   +++v+k++y+e G rg++rG l +  ++a+ s+l++++y+  k +l+ 
  CCE26572.1 228 ASAGSAGAVAAFITTPSDVVKTRMMITAGKADSAG---AWSVVKTVYRERGARGFFRGGLFRSGWTAIGSSLYLGTYDAAKAWLQG 310
                 57899*************************99866...9******************************************99976 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  15.9   1.7e-05     0.051      32      86 ..      93     146 ..      84     174 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
       SR-25  32 sasksqsrkassasekeeerskekkkkkrrrssssssssssssssssssssssss 86 
                 sas   +   + +  + +e  k+++++ r++s ssssssssss ssssssss+  
  CCE26572.1  93 SASAVAEMASCLVL-APAEVIKQNAQMLRENSGSSSSSSSSSSPSSSSSSSSAKA 146
                 44444444444333.3446667777777776767766666666666666655443 PP

>> CCDC106  Coiled-coil domain-containing protein 106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.2   2.9e-05     0.088      41     107 ..      88     152 ..      85     211 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.9e-05
     CCDC106  41 kfissksleaeaekeskskksekkaeksesessssseesddsssdssessessegsstekkkkkkkk 107
                 +++ s+++ a ae +s+ +  +++  k++ +   +++ s +sss ss s +ss++ss++k k    +
  CCE26572.1  88 SLVHSSAS-AVAEMASCLVLAPAEVIKQNAQMLRENSGSSSSSS-SSSSPSSSSSSSSAKAKLSGWA 152
                 56666665.56888888888888766666666655555544444.5555666666666666554433 PP

>> Transposase_24  Plant transposase (Ptta/En/Spm family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   5.6e-05      0.17      82     131 ..     110     172 ..     107     183 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
  Transposase_24  82 eiaekvkerlqeresesesetsaesdgssrl.............iedkneiflqvvgkdkkgr 131
                     e++++  + l+e++ +s+s++s++s +ss++             + +  ++f+q +gkd+ +r
      CCE26572.1 110 EVIKQNAQMLRENSGSSSSSSSSSSPSSSSSsssakaklsgwaqNSTSLQAFRQLAGKDSSRR 172
                     677888888888888777777777666666666678888888777777788899999999855 PP

>> IMUP  Immortalisation up-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   9.7   0.00013      0.39      41      76 ..     116     150 ..     105     164 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
        IMUP  41 aekprhghgkssssdsssssssssdsdaeakphaag 76 
                 a+  r+  g ssss+ssss  sss s + ak++ +g
  CCE26572.1 116 AQMLRENSGSSSSSSSSSS-PSSSSSSSSAKAKLSG 150
                 5555666655555554444.4566666677776555 PP

>> DUF5470  Family of unknown function (DUF5470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.2    0.0017         5      15      40 ..     125     151 ..     113     184 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0017
     DUF5470  15 eskyksssvs.sssstGasaklslsey 40 
                  s   sss s ssss+ +sak  ls +
  CCE26572.1 125 SSSSSSSSSSpSSSSSSSSAKAKLSGW 151
                 444444333325556666677766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1114  (0.062134); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2239.20
//
Query:       CCE26573.1  [L=216]
Description: uncharacterized protein CPUR_00041 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.09   12.4   0.1       0.22   11.1   0.1    1.7  1  STAT1_TAZ2bind  STAT1 TAZ2 binding domain


Domain annotation for each model (and alignments):
>> STAT1_TAZ2bind  STAT1 TAZ2 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.2e-05      0.22      14      24 ..      88      98 ..      88      99 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.2e-05
  STAT1_TAZ2bind 14 PedYgELeRlV 24
                    Pe+++EL++lV
      CCE26573.1 88 PEVFDELRQLV 98
                    9*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1671.27
//
Query:       CCE26574.1  [L=361]
Description: related to translation initiation factor eIF3 p40 subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-07   28.8   2.2      5e-05   23.3   2.2    2.5  1  JAB       JAB1/Mov34/MPN/PAD-1 ubiquitin protease


Domain annotation for each model (and alignments):
>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   2.2   2.8e-09     5e-05       3     116 ..      10     133 ..       8     135 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.8e-09
                 SCEEEEEHHHHHHHHHHHHHHHHHTS--EEEEEEEESSSEEEEEEEEEEESEEEESSECEE..............EEEHHHHHHHHHHHHHHHCTTSEE CS
         JAB   3 vqavhleslvllkildhalrtekeeeevmGlliGelnddttveitnvfalpfeetekdvda..............vsldqeylekksellkklrgrerv 87 
                 +qav++e+lv++ki +h ++t        G ++G  +++  +eitn f++p  e   +                 ++ + +y ++++++lk+++ + + 
  CCE26574.1  10 FQAVQVEALVIMKIAKHCSSTFPT--IATGAIVGMDQNN-LLEITNTFQFPTVEHVATEGHqqndtsssagaaprQKANISYQNEMIRYLKEVNVDANN 105
                 699*********************..99******99999.9*****99999776555533300000011111111233345667777777777788*** PP

                 EEEEEESSSS-SS--HHHHHHHHHHHHHS CS
         JAB  88 vGWYhshpditvwlsevdvrtqalyqrmd 116
                  GWY+s      +++   ++ q  yq+ +
  CCE26574.1 106 AGWYTSATMG-NFVNMGFIENQYHYQKEN 133
                 ****998776.788888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2889.28
//
Query:       CCE26575.1  [L=449]
Description: probable adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.5e-128  428.1   0.0    4.5e-74  249.3   0.2    2.0  2  AdoHcyase      S-adenosyl-L-homocysteine hydrolase
    4.3e-82  274.0   3.3    6.6e-82  273.4   3.3    1.3  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
      6e-06   25.7   0.2    1.4e-05   24.6   0.2    1.6  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
     0.0064   16.4   0.5      0.011   15.6   0.5    1.4  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
  ------ inclusion threshold ------
      0.015   15.6   0.1      0.031   14.6   0.1    1.5  1  TrkA_N         TrkA-N domain
      0.025   14.3   0.1      0.046   13.4   0.1    1.6  1  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro
      0.074   12.6   0.4       0.15   11.7   0.4    1.4  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind


Domain annotation for each model (and alignments):
>> AdoHcyase  S-adenosyl-L-homocysteine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.3   0.2   1.8e-77   4.5e-74       1     138 [.       7     144 ..       7     146 .. 0.99
   2 !  178.6   0.0     6e-56   1.5e-52     171     299 .]     144     448 ..     142     448 .. 0.97

  Alignments for each domain:
  == domain 1  score: 249.3 bits;  conditional E-value: 1.8e-77
                 --B-S-GGGHHHHHHHHHHHHCC-HHHHHHHHHCTTT-TTTT-EEEEES--SHHHHHHHHHHHHTT-EEEEE-SSTTT--HHHHHHHCCTTEEEE--TT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase   1 dykvkdislaefGrkeielaekempglmalreeyaeekplkgariaGslhmtiqtavLietLvalGaevrWasCnifstqdeaaaaiaeagvpvfawkg 99 
                 ++kv+d+sla+fGrkeielae+empglma+re+ya+++plkgariaG+lhmtiqtavLietL+alGaev+W+sCnifstqd+aaaaia+agvpvfawkg
  CCE26575.1   7 KFKVADLSLAAFGRKEIELAENEMPGLMATREKYASDQPLKGARIAGCLHMTIQTAVLIETLTALGAEVTWTSCNIFSTQDHAAAAIAAAGVPVFAWKG 105
                 59************************************************************************************************* PP

                 --HHHHHHHHHHCHS-SSTS-S-SEEEESSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase 100 etleeywwcieqalkwaedekepnlilDdGGDltllvhk 138
                 et+eey wc+eq+l   +d+++ nlilDdGGDlt lvh+
  CCE26575.1 106 ETEEEYNWCLEQQLLAFKDGAKLNLILDDGGDLTSLVHS 144
                 ***************99********************97 PP

  == domain 2  score: 178.6 bits;  conditional E-value: 6e-56
                 THHCCCHCC--EEEE-SHHHHHHHHHHHHTT---SEEEESTTSHHHCTTH................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
   AdoHcyase 171 kkytellkkikGvseetttGvhrLyelakkgkLlvpainvndsvtkskfD................................................. 220
                 +ky+e+lk++ GvseetttGvh+Ly++ k++kLlvpainvndsvtkskfD                                                 
  CCE26575.1 144 SKYPEMLKDCYGVSEETTTGVHHLYRMLKDNKLLVPAINVNDSVTKSKFDnlygcreslidgikratdvmvagkvavvagfgdvgkgcaealatmgarv 242
                 69************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
   AdoHcyase 221 ................................................................................................... 220
                                                                                                                    
  CCE26575.1 243 liteidpinalqaamagyqvttmekaakigqifvtttgcrdiltgvhfeampndaivcnighfdieidvawlkanaqsvqnikpqvdrflmkngrhivl 341
                 *************************************************************************************************** PP

                 ..............S-HHHHHHHHHHHHHHHHHHHHT.TSSS-SS.............EEE--CHHHHHHHHHCCCCCT-------HHHHHCCTSXTTS CS
                 ..............xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase 221 ..............hpsfvmsasftnqvlaqielfkk.ekkyekk.............vyvlpkklDekvarlhleklgaklteltkeqaeyigveveG 291
                               h+sfvms+sftnqvlaqi lfk  +++  kk             vyvlpk lDe+varlhl++++a+l++lt  qaey++++ +G
  CCE26575.1 342 laegrlvnlgcatgHSSFVMSCSFTNQVLAQIMLFKArDEAFGKKyiefaqsskldvgVYVLPKILDEEVARLHLSHVQAELSTLTPIQAEYLSLPPQG 440
                 ************************************6344444446667777888888***************************************** PP

                 XXSXTTXX CS
                 xxxxxxxx RF
   AdoHcyase 292 PfkpdhYr 299
                 Pfk+d Yr
  CCE26575.1 441 PFKSDIYR 448
                 *******8 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.4   3.3   2.6e-85   6.6e-82       1     162 []     194     355 ..     194     355 .. 1.00

  Alignments for each domain:
  == domain 1  score: 273.4 bits;  conditional E-value: 2.6e-85
                    HHHHHCCCCCHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEEEE-SSSSSSB-HHH CS
  AdoHcyase_NAD   1 nlygcreslvdgikratdvllaGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadivvtttGnkdiitleh 96 
                    nlygcresl+dgikratdv++aGkvavvaG+GdvGkGca++l ++Garv++te+dPi+alqaam G++v+t+e+++k ++i+vtttG++di+t  h
     CCE26575.1 194 NLYGCRESLIDGIKRATDVMVAGKVAVVAGFGDVGKGCAEALATMGARVLITEIDPINALQAAMAGYQVTTMEKAAKIGQIFVTTTGCRDILTGVH 289
                    89********************************************************************************************** PP

                    HCCS-TTEEEEE-SSTTTTBTHHHHHTTT-EEEEEETTEEEEE-TTS-EEEEEGGGSBCHHHTS-- CS
  AdoHcyase_NAD  97 lkkmkddaivcniGhfdseidvaaleanalkkeevkpqvdrvtlkdgkkiillaeGrllnlgcatg 162
                    +++m +daivcniGhfd eidva+l+ana++++++kpqvdr+ +k+g++i+llaeGrl+nlgcatg
     CCE26575.1 290 FEAMPNDAIVCNIGHFDIEIDVAWLKANAQSVQNIKPQVDRFLMKNGRHIVLLAEGRLVNLGCATG 355
                    ****************************************************************97 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   5.4e-09   1.4e-05      33     127 ..     213     303 ..     197     316 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 5.4e-09
                   -GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS CS
  2-Hacid_dh_C  33 elsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpetrhlinaeelakmkkgailiNta 127
                    ++gk   + G+G++G+  a+ l+ +g++v++++  + +  +++  g++++++e++ +  +i +     t   r++++  ++++m+++ai+ N++
    CCE26575.1 213 MVAGKVAVVAGFGDVGKGCAEALATMGARVLITEIDPINALQAAMAGYQVTTMEKAAKIGQIFVT----TTGCRDILTGVHFEAMPNDAIVCNIG 303
                   578999******************************99888899999988888888887777765....556899******************98 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.5   4.3e-06     0.011       2      70 ..     218     291 ..     217     302 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.3e-06
                 EEEE.--SCCHHHHHHHHHHTT-EEEEE-S-H.HHHHHHHHHHHH.HHHCCTTTTSS-..HHHHCCCHHCEEEE CS
     3HCDH_N   2 vavi.GaGtmGagiaavfasagleVvlvdise.ealekalekiek.sleklvekgklk..eeeveaalarisft 70 
                 vav+ G G +G+g a+++a  g +V +++i++ +al++a++  +  ++ek+++ g++   +  ++++l+ ++f+
  CCE26575.1 218 VAVVaGFGDVGKGCAEALATMGARVLITEIDPiNALQAAMAGYQVtTMEKAAKIGQIFvtTTGCRDILTGVHFE 291
                 6665499***********************87467777777777657788888777653355555666666555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   1.2e-05     0.031       2      44 ..     220     262 ..     219     270 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-05
                 EEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEE CS
      TrkA_N   2 iiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglev 44 
                 +++G+G+vG+  ae L + g  +v++ + d+ ++ +++  g++v
  CCE26575.1 220 VVAGFGDVGKGCAEALATmGA-RVLITEIDPINALQAAMAGYQV 262
                 8*****************666.6********9999999888886 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.8e-05     0.046      22      63 ..     206     248 ..     195     352 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
                    HHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EE.EEEEE CS
  ELFV_dehydrog  22 lkklkldslegkrvaisGsGnvgsyaallltelgakv.vavsD 63 
                    +k++    ++gk  ++ G+G+vg+ +a+ l+++ga+v ++ +D
     CCE26575.1 206 IKRATDVMVAGKVAVVAGFGDVGKGCAEALATMGARVlITEID 248
                    4443333699*************************98334455 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   5.7e-05      0.15       4      64 ..     216     275 ..     213     281 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.7e-05
                 TS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEE CS
        IlvN   4 gkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvv 64 
                 gk  +v G+G  G+  a+ l   g  v ++  +   ++ +A  +g++v+t+++a+k  ++ 
  CCE26575.1 216 GKVAVVAGFGDVGKGCAEALATMGARVLITEIDPI-NALQAAMAGYQVTTMEKAAKIGQIF 275
                 5666778**********************998888.66677789***********988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3486.32
//
Query:       CCE26576.1  [L=334]
Description: related to D-mandelate dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-55  187.7   0.0    1.8e-55  187.1   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    8.4e-22   77.3   0.0    9.7e-22   77.1   0.0    1.0  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    0.00016   21.8   0.0    0.00029   21.1   0.0    1.4  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1   0.0     3e-59   1.8e-55       1     178 []     121     296 ..     121     296 .. 0.96

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 3e-59
                   HHHHHHHHTTHHHHHHHHHTTCC.HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEE CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregew.ksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivs 96 
                   ++lll +lr++a + +++r+gew  +    lg++ +gk +Gi+G+G IG++va ++kafgmkv +++r+k +ee   + g+e+v +e llaesD++s
    CCE26576.1 121 IWLLLGALRNFAPGMSNLRAGEWrGNIPPRLGHDPQGKILGILGMGGIGRNVAAKAKAFGMKVRYHNRTKLSEE--LDGGAEYVPFERLLAESDVLS 215
                   5799*******************76667999**************************************98655..77799**************** PP

                   E-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  97 lhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   l+lpl+p+trh+i++++++ mk+g i++Nt+RG+++de+aL++aL++gk+a a+lDv+e ep  +   ll+ +nv+l PH++
    CCE26576.1 216 LNLPLNPKTRHIISKQQFDIMKPGIIIVNTSRGAVMDEAALVDALHAGKVASAGLDVYEDEPTIHP-GLLKNQNVVLLPHMG 296
                   ****************************************************************77.9************98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   1.6e-25   9.7e-22      10     133 ..      18     327 ..       7     328 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 1.6e-25
                 HHHHHHHHTTE.EEEEESCSSHHHCHHHHTT..ESEEEE-TTS........-BSHHHHHHH.TT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx..xxxxxxxxxx........xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh  10 eelellkeegv.evevkdellteellekakd..adalivrsnt........kvtaevleal.pkLkviaragvGvDnvDldaakerGilVtnvpgyste 96 
                 e+  ++ +  + +v + +++ +e+l+++a+   +d+++v+++t        kv++e+l+al ++Lk+ ++ g+G+D++D++ ++ +Gi V+n+p++  +
  CCE26576.1  18 EAWSRVAQ--IaDVLTPKAKNREDLIAEAQSgaFDGVVVAYRTfesfavtgKVNNELLDALpSSLKFLCHNGAGYDQIDIPSCSSHGIRVSNTPTAVDD 114
                 44444444..55788888999999*99999999****************************99************************************ PP

                 HHHHHH............................................................................................. CS
                 xxxxxx............................................................................................. RF
  2-Hacid_dh  97 svAElt............................................................................................. 102
                 s+A++t                                                                                             
  CCE26576.1 115 STADTTiwlllgalrnfapgmsnlragewrgnipprlghdpqgkilgilgmggigrnvaakakafgmkvryhnrtklseeldggaeyvpferllaesdv 213
                 *************************************************************************************************** PP

                 ...................................................................................T-BHHHHHHHHHHHHH CS
                 ...................................................................................xxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ...................................................................................aaTeeaqeniaeeaae 118
                                                                                                     +T e+  ++ e a++
  CCE26576.1 214 lslnlplnpktrhiiskqqfdimkpgiiivntsrgavmdeaalvdalhagkvasagldvyedeptihpgllknqnvvllphmgTYTVETETKMEEWAID 312
                 *************************************************************************************************** PP

                 HHHHHHTTCCGTTBC CS
                 xxxxxxxxxxxxxxx RF
  2-Hacid_dh 119 nlvaflkgespanav 133
                 n++ +l+g++++++v
  CCE26576.1 313 NVKMALEGGQLKSIV 327
                 **********99987 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   4.8e-08   0.00029       2     108 ..     160     264 ..     159     273 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 4.8e-08
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstssped 96 
                    +g++G+G +G+n a + ++ g+kv  +nrt  k+ e ++ ga+ +   e l+a+ dv  + ++ +++++++i++  ++ +k+g i++++s  ++ d
     CCE26576.1 160 LGILGMGGIGRNVAAKAKAFGMKVRYHNRT--KLSEELDGGAEYVP-FERLLAESDVLSLNLPLNPKTRHIISKqQFDIMKPGIIIVNTSRGAVMD 252
                    699*************************99..78888888887665.67799999*****************99999*************999999 PP

                    HHHHHHHHHHTT CS
  NAD_binding_2  97 trelakelkekg 108
                       l ++l++ +
     CCE26576.1 253 EAALVDALHAGK 264
                    888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2377.99
//
Query:       CCE26577.1  [L=268]
Description: related to middle part of C.elegans myosin heavy chain A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-56  191.2  11.5    1.9e-56  190.9  11.5    1.1  1  DUF1640          Protein of unknown function (DUF1640)
  ------ inclusion threshold ------
      0.027   14.7   5.7       0.78   10.1   0.2    2.8  2  Lzipper-MIP1     Leucine-zipper of ternary complex factor MIP
      0.094   12.7   0.1       0.23   11.4   0.1    1.7  1  ApoO             Apolipoprotein O
        0.3   11.0   1.9        3.3    7.7   0.6    2.4  2  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
       0.37   10.8  14.9      0.074   13.1   4.3    2.2  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
       0.42   10.8   6.9       0.67   10.2   4.7    2.4  2  cwf21            cwf21 domain


Domain annotation for each model (and alignments):
>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9  11.5   6.4e-60   1.9e-56       1     174 [.      93     266 ..      93     267 .. 0.99

  Alignments for each domain:
  == domain 1  score: 190.9 bits;  conditional E-value: 6.4e-60
     DUF1640   1 fDThalvrrLeekGftkeqAeaimsaltevlneslekvakslvskselekseylqkaalselrkevqisersefaalrseteklqreleklkqkLreei 99 
                 fDT+++v+rL+ +Gft+eq+ a+m++l++v++es++++++++v +++  k++y+qk+++++lr+e+ + + +e+++ r+ +e+l++++ kl+++Lr+ei
  CCE26577.1  93 FDTLKFVKRLQDEGFTEEQSVAMMKVLNDVIQESIQNLTRTMVLREDAAKATYTQKVDFAKLRSELLSADSTEVNTTRTAHERLENDIAKLRSRLRDEI 191
                 9************************************************************************************************** PP

     DUF1640 100 dklkadirldlnleKgrireelakleakiqelnnkidrevsalrteiEsvKldvikyliglvvgilavglavvRl 174
                 ++++a++rldlnleKgriree   +e ki+e+++ki++ev+ lr ++E+vK++++++l+gl++g++a++l+++R+
  CCE26577.1 192 SRTQASVRLDLNLEKGRIREEAVGQELKIKETETKIEQEVAMLREKLEQVKFQTLQWLLGLCTGLAALMLGAWRV 266
                 *************************************************************************97 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00026      0.78       6      27 ..     173     194 ..     168     206 .. 0.85
   2 ?    5.9   1.1    0.0053        16       4      22 ..     222     240 ..     219     247 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
  Lzipper-MIP1   6 rssLeqeveqLqerLqeeeklr 27 
                      Le+++++L+ rL++e +  
    CCE26577.1 173 HERLENDIAKLRSRLRDEISRT 194
                   678***************8755 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0053
  Lzipper-MIP1   4 ekrssLeqeveqLqerLqe 22 
                   e+++++eqev++L+e+L++
    CCE26577.1 222 ETETKIEQEVAMLREKLEQ 240
                   6777888888888888876 PP

>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   7.6e-05      0.23       7      64 ..     168     239 ..     158     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.6e-05
        ApoO   7 tpseeptdrLeegvrslRkslepytsavqdel...............nkvkskvetaeqsvtdtiasLkeppe 64 
                 t+  + ++rLe+ +++lR  l +++s +q+++                 ++ k++++e+++++++a L e+ e
  CCE26577.1 168 TT-RTAHERLENDIAKLRSRLRDEISRTQASVrldlnlekgrireeaVGQELKIKETETKIEQEVAMLREKLE 239
                 33.4899************************************999866667777777777777777777654 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.061   1.8e+02      15      36 ..     169     190 ..     161     194 .. 0.87
   2 ?    7.7   0.6    0.0011       3.3      13      38 ..     218     243 ..     213     249 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.061
  HU-CCDC81_bac_2  15 yeeAlqkiekeveelkqeLeee 36 
                       ++A +++e+++++l+++L +e
       CCE26577.1 169 TRTAHERLENDIAKLRSRLRDE 190
                      67899*************9865 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0011
  HU-CCDC81_bac_2  13 isyeeAlqkiekeveelkqeLeeegr 38 
                      +  +e  +kie+ev+ l+++Le+ + 
       CCE26577.1 218 LKIKETETKIEQEVAMLREKLEQVKF 243
                      6678999**************99765 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   4.3   2.5e-05     0.074      32     111 ..     117     197 ..     100     203 .. 0.89
   2 ?    3.3   3.0     0.027        81      82     116 ..     208     242 ..     199     245 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.5e-05
  TPR_MLP1_2  32 ekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelk.aeaesakaeleeseesweeqkeelekelselekr 111
                 +   +  +e  q+  r +v+ ++++k+  + + ++++l++e+ ++  +e++++++++e+ e+ +++ +++l++e+s +++ 
  CCE26577.1 117 KVLNDVIQESIQNLTRTMVLREDAAKATYTQKVDFAKLRSELLSADsTEVNTTRTAHERLENDIAKLRSRLRDEISRTQAS 197
                 556677889999*****************************988852799**************************99876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.027
  TPR_MLP1_2  82 sakaeleeseesweeqkeelekelselekriedln 116
                 + ++e   +e +++e+++++e+e++ l++++e ++
  CCE26577.1 208 RIREEAVGQELKIKETETKIEQEVAMLREKLEQVK 242
                 55666666777888888888888888888888776 PP

>> cwf21  cwf21 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.63   1.9e+03      16      28 ..      98     110 ..      95     133 .. 0.78
   2 ?   10.2   4.7   0.00022      0.67      10      42 ..     177     239 ..     152     240 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.63
       cwf21  16 lrdeLEeeglsee 28 
                 +  +L +eg +ee
  CCE26577.1  98 FVKRLQDEGFTEE 110
                 5578999987666 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00022
       cwf21  10 EvkvlelrdeLEeeg..............................lseeeIeervdelRekLl 42 
                 E  + +lr +L +e                                +e  Ie++v  lRekL 
  CCE26577.1 177 ENDIAKLRSRLRDEIsrtqasvrldlnlekgrireeavgqelkikETETKIEQEVAMLREKLE 239
                 6678899999999744888999999999999*************66****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1751  (0.097663); expected 358.6 (0.02)
Passed bias filter:                      728  (0.0406046); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1908.34
//
Query:       CCE26578.1  [L=358]
Description: uncharacterized protein CPUR_00046 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-48  160.3   8.0    1.5e-23   82.5   0.6    2.3  2  DUF2196         Uncharacterized conserved protein (DUF2196)
     0.0076   15.9   0.0        3.1    7.4   0.0    2.1  2  Peripla_BP_6    Periplasmic binding protein
  ------ inclusion threshold ------
       0.11   12.8   0.0         18    5.7   0.0    2.9  3  Phage_DNA_bind  Helix-destabilising protein
       0.27   11.0   0.2       0.27   11.0   0.2    2.5  3  Zn_Tnp_IS1      InsA N-terminal domain
       0.33   10.6   4.0        9.8    5.8   0.4    2.5  2  PAXX            PAXX, PAralog of XRCC4 and XLF, also called C


Domain annotation for each model (and alignments):
>> DUF2196  Uncharacterized conserved protein (DUF2196)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.6   4.2e-27   1.5e-23       5      61 .]      59     114 ..      55     114 .. 0.95
   2 !   81.6   1.5   8.2e-27     3e-23       5      61 .]     204     259 ..     200     259 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 4.2e-27
     DUF2196   5 rkdikpGleVeivlkkdqrtGklteGiVkdilTnssthphGIKVrLedGeVGRVqei 61 
                  +++ pG++V ivlk+dq+tGk+t G V+++lT+  +hp+GIKVrL++G+VGRVq++
  CCE26578.1  59 FRQVVPGASVFIVLKEDQPTGKETAGKVAQLLTRG-NHPRGIKVRLQNGQVGRVQRM 114
                 6799*******************************.*******************85 PP

  == domain 2  score: 81.6 bits;  conditional E-value: 8.2e-27
     DUF2196   5 rkdikpGleVeivlkkdqrtGklteGiVkdilTnssthphGIKVrLedGeVGRVqei 61 
                  +++ pG++V i+lk+dq+tGk+t G+V+++lT+  +hp+GIKVrL dG+VGRVq++
  CCE26578.1 204 LRQVVPGASVFIILKEDQPTGKETAGVVAQVLTRG-NHPRGIKVRLHDGRVGRVQRM 259
                 6799*******************************.*******************85 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00087       3.1     113     161 ..      43      92 ..      30     104 .. 0.87
   2 !    6.4   0.0    0.0017         6     114     160 ..     189     236 ..     176     241 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00087
                   ESS--HHHHHHHHHHHHHHHTTSCEEE.EEEESSHHHHHHHHHHHHHHHC CS
  Peripla_BP_6 113 slgpsysaqasalveylakelggkkva.lvyadyafgregiaalkaaaka 161
                   +++p + +q++++v  +++ + g +v+ ++  d + g+e++  +++++++
    CCE26578.1  43 PWRPATPQQVAGTVPSFRQVVPGASVFiVLKEDQPTGKETAGKVAQLLTR 92 
                   899****************98877777255799*********99999875 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0017
                   SS--HHHHHHHHHHHHHHHTTSCEEEEE.EESSHHHHHHHHHHHHHHH CS
  Peripla_BP_6 114 lgpsysaqasalveylakelggkkvalv.yadyafgregiaalkaaak 160
                   ++p + +qa+++v  l++ + g +v+++   d + g+e++  ++++++
    CCE26578.1 189 WRPATPQQAAGTVPSLRQVVPGASVFIIlKEDQPTGKETAGVVAQVLT 236
                   78999*************99888888662799*********9999987 PP

>> Phage_DNA_bind  Helix-destabilising protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.005        18      36      54 ..      90     108 ..      69     112 .. 0.83
   2 ?   -3.0   0.0       2.6   9.2e+03      19      42 ..     128     151 ..     119     155 .. 0.74
   3 ?    3.8   0.0      0.02        71      33      53 ..     232     252 ..     215     255 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.005
                     -TTSSS-EEEEEEE-TTS- CS
  Phage_DNA_bind  36 ylgdkfPveikvtLeddQl 54 
                        +++P  ikv+L+++Q 
      CCE26578.1  90 LTRGNHPRGIKVRLQNGQV 108
                     56788************96 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.6
                     SSSSS.EEEEEEEEEEE-TTSSS- CS
  Phage_DNA_bind  19 skkgkkpysirEQeayvylgdkfP 42 
                      +k+ +p+++    + v +  ++P
      CCE26578.1 128 PNKTTQPTKLSHRSTNVRIDFNHP 151
                     456668999988888888887777 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.02
                     EEE-TTSSS-EEEEEEE-TTS CS
  Phage_DNA_bind  33 ayvylgdkfPveikvtLeddQ 53 
                     a v   +++P  ikv+L d+ 
      CCE26578.1 232 AQVLTRGNHPRGIKVRLHDGR 252
                     56788999**********985 PP

>> Zn_Tnp_IS1  InsA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.6       1.3   4.5e+03      18      25 ..      31      38 ..      28      41 .. 0.79
   2 ?   -2.4   0.4       1.1   4.1e+03      18      26 ..     176     184 ..     175     185 .. 0.90
   3 ?   11.0   0.2   7.5e-05      0.27       4      14 ..     331     341 ..     329     351 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
  Zn_Tnp_IS1 18 RhGkstag 25
                RhG+  +g
  CCE26578.1 31 RHGRKDSG 38
                99998877 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
  Zn_Tnp_IS1  18 RhGkstagH 26 
                 RhG   +gH
  CCE26578.1 176 RHGPKDSGH 184
                 9**999999 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 7.5e-05
  Zn_Tnp_IS1   4 VsihCPrCsst 14 
                 Vs+hCP C s 
  CCE26578.1 331 VSVHCPMCDSF 341
                 9*******994 PP

>> PAXX  PAXX, PAralog of XRCC4 and XLF, also called C9orf142
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.4    0.0027       9.8     141     175 ..      34      68 ..      11      77 .. 0.86
   2 ?    5.5   0.2    0.0033        12     142     175 ..     180     213 ..     162     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0027
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        PAXX 141 rKksqragaefePdkdqkrggpgaavkkrlPGesL 175
                 rK+s ++++ + P + q+ +g++++ ++ +PG+s+
  CCE26578.1  34 RKDSGPSRTPWRPATPQQVAGTVPSFRQVVPGASV 68 
                 6888899999***********************96 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0033
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        PAXX 142 KksqragaefePdkdqkrggpgaavkkrlPGesL 175
                 K+s ++g+ + P + q+ +g+++++++ +PG+s+
  CCE26578.1 180 KDSGHSGPTWRPATPQQAAGTVPSLRQVVPGASV 213
                 666778889***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2591.73
//
Query:       CCE26579.1  [L=418]
Description: related to integral membrane protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3045.58
//
Query:       CCE26580.1  [L=297]
Description: uncharacterized protein CPUR_00048 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-10   40.1   0.0    3.1e-07   30.3   0.0    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    9.7e-07   28.3   0.0    3.3e-06   26.5   0.0    1.7  1  Hydrolase_4    Serine aminopeptidase, S33
    4.7e-06   27.4   0.2    6.6e-06   26.9   0.2    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    2.2e-05   23.3   0.0    5.8e-05   21.9   0.0    1.7  1  Ndr            Ndr family
  ------ inclusion threshold ------
        0.2   10.3   0.0       0.64    8.6   0.0    1.7  2  AXE1           Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   8.8e-11   3.1e-07      22     111 ..      52     136 ..      32     144 .. 0.84
   2 !    7.9   0.0    0.0006       2.2     186     226 ..     193     248 ..     181     280 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 8.8e-11
                    HHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCC CS
  Abhydrolase_1  22 apaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvllgaidpaa 111
                     +aL +    ++++ ++G+g +s++++    +++ +++a +  +++dal +++   +G S+GG i+  +a+++p+r+ +l  l++++++ 
     CCE26580.1  52 DRALTE-AVNLLAIEPLGHGATSARSD----QWTYWDTAIMALQVMDALHVERAFALGTSQGGWIVVRMALLAPDRILGLLPLATSMDCE 136
                    555555.66789999***********6....59*********************************************999888866655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0006
                    HHHHHHHHHCCHHHHHHHHHC...............THHHHSEEEEEEETTCSSSC CS
  Abhydrolase_1 186 lksieqwpttdsaklllrlre...............lknvlaptlvisgtsDplvp 226
                    +++ e+ +t +++   +r  +               l+++++p+ +++gt+Dp++ 
     CCE26580.1 193 SFWDETLKTVYRGDEGRRKLRmalacllerdgllfrLRDIKCPVHWLQGTEDPVFG 248
                    4555555666666555555558888888889999999*****************95 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   9.3e-10   3.3e-06       5     234 ..      31     277 ..      27     279 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 9.3e-10
  Hydrolase_4   5 avvvlvHGlaehsgryae.laeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkv 101
                   + vl++ ++ +s+ y+  + ++   + ++ +a+   GhG +  +  +++ +d+ +  l+ + +++      ++ f lG S GG i+++++l  pd++
   CCE26580.1  31 PTAVLINSMCTTSSLYNVqFEDRALTEAVNLLAIEPLGHGATSARSDQWTYWDTAIMALQVM-DALH----VERAFALGTSQGGWIVVRMALLAPDRI 123
                  56677777777888887635555666778999999*******88888899998888888666.3333....4568*********************** PP

  Hydrolase_4 102 aglilsaPalkikakl........kappllklllkllgkllpklqv..............snnlkadslsrdpevvaayeadplv..hgkitvrllle 175
                   gl   a+ ++ ++          +    +  l+ +  +++ + +               + +  a+   + +++ +++ +  +    g+ ++r++l 
   CCE26580.1 124 LGLLPLATSMDCESAAsrekgcwdP----QTQLAPFYDSFCSSTPTpdyvvdevwrgmvcQLGFSASTPKETQSFWDETLKTVYRgdEGRRKLRMALA 217
                  ***********99887777444430....444555555555555556666688888777755555555555555555555555554457778899999 PP

  Hydrolase_4 176 lldamkrleeraakitlPllllhGeaDkv...vdpeasrelyerlgskdktlklypglyHel 234
                  +l   + l+ r  +i+ P+  l+G++D+v   v p+++ +l+ +++  + tl++ +g+ H l
   CCE26580.1 218 CLLERDGLLFRLRDIKCPVHWLQGTEDPVfgtVLPKDHIKLFTAAT--EATLTMVEGGCHYL 277
                  99999***********************955556777788888777..79999999999965 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.2   1.8e-09   6.6e-06      10     220 .]      42     288 ..      33     288 .. 0.54

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.8e-09
                    ....GCHHHH.HHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHH...HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC....EE..EEES-.. CS
  Abhydrolase_6  10 sassWlvapL.aallaagvhvlapDlpGhGrsdpppldledladl...aalldelaagggpvvlvGHSlGGalalaaapla..lvvg..vlldppp 97 
                    ++s +  +++  ++l++ v  la+   GhG ++ + + ++  ++    +++ d+l     +++++G S+GG+++ + a la  ++ g   l  +  
     CCE26580.1  42 TSSLY-NVQFeDRALTEAVNLLAIEPLGHGATSARSDQWTYWDTAimaLQVMDALH--VERAFALGTSQGGWIVVRMALLApdRILGllPLATS-- 132
                    55555.234456777888899*********88777777766544446677888885..77789*************444444433333333333.. PP

                    ----TTTS----TTHHHHHHTT-C..........CCCHCCHS-HSCCCCHHHCCCCHCHCCCGHH............................... CS
  Abhydrolase_6  98 talpagllaaalelllallallrl..........lawlsreplprlfladedadaawrarlarla............................... 152
                     ++  + +++    +++ ++l+++          + ++         ++     + wr ++  l                                
     CCE26580.1 133 -MDCESAASREKGCWDPQTQLAPFydsfcsstptPDYV---------VD-----EVWRGMVCQLGfsastpketqsfwdetlktvyrgdegrrklr 213
                    .3333334444444444444333321111111112222.........22.....334444433333333333333333333333334444444433 PP

                    .HHCCHHC...HTTCCHHTT-TTGCEEE.CTT-C....HHHHCHHCCCH.STTEEETCE...SSS-HHHHSHHHHHHH CS
  Abhydrolase_6 153 .allaglg...llpaaawadlpvpllvl.ggeDp....lvprllerlla.qagarlpvvlpgaGHlphleepdevaea 220
                     al++ l+   ll   +++d+ +p+++l g+eDp    ++p    +l + ++ a+l + ++g+ H++   +p+ev+ea
     CCE26580.1 214 mALACLLErdgLLF--RLRDIKCPVHWLqGTEDPvfgtVLPKDHIKLFTaATEATL-TMVEGGCHYLSATNPKEVNEA 288
                    32222222222333..9********99889****8888555443344445566777.999999998887799999885 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.6e-08   5.8e-05      84     276 ..      83     293 ..      34     296 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.6e-08
                 HHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEE..S---S---HHHH...........HHHHHH.......TTTS-HHHHHHHHH CS
         Ndr  84 dladqllavldhfklksviglGvgaGAyilarfalkhperveglvLi..nitskaagwvew...........akeKlsskllkkvgltdllkdlllahk 169
                 d a + l+v+d ++++ + +lG+  G +i++r al  p+r++gl+ +  ++++++a+  e            +++ + s++         ++d+++   
  CCE26580.1  83 DTAIMALQVMDALHVERAFALGTSQGGWIVVRMALLAPDRILGLLPLatSMDCESAASREKgcwdpqtqlapFYDSFCSST--------PTPDYVVDEV 173
                 55678899************************************8551244454444333310010111111233333333........3345554444 PP

                 S-HHHHHH.........T-HHHHHH.HHHHHT-TTHHHHHHHHHHHHT-------TTSSSS-EEEEEETTSTTHHHHH...HHHHHS-TTTEEEEEETT CS
         Ndr 170 Fgkeekse.........nsdlvrey.rkllkerlnsknlelyleaynkRrdleierkklevkvllvvGdkspfvdevv...evnskldkkkttllkvad 255
                 +    ++           +    e  ++  + + +++ l+  l  + +R  l   ++  +++v  + G + p   +v+   +++     +++tl  v+ 
  CCE26580.1 174 WRGMVCQLgfsastpkeTQSFWDETlKTVYRGDEGRRKLRMALACLLERDGLLFRLRDIKCPVHWLQGTEDPVFGTVLpkdHIKLFTAATEATLTMVEG 272
                 444444433333332214444444304444456677888888888888888888888888888888888888888887422233333455667777777 PP

                 -TT-HHHH-HHHHHHHHHHHH CS
         Ndr 256 sgglvleeqPdklaeslklfl 276
                  +    +++P+ + e+l  ++
  CCE26580.1 273 GCHYLSATNPKEVNEALLSMV 293
                 777788888888888887665 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00018      0.64     161     196 ..      85     120 ..      78     128 .. 0.82
   2 ?   -1.7   0.0      0.25   8.9e+02      20      35 ..     187     202 ..     184     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00018
                 HHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH-S CS
        AXE1 161 lveivaslpevDeeRvavlGasqGGalalavaalek 196
                 ++ +++ ++    eR ++lG+sqGG + + +a l +
  CCE26580.1  85 AIMALQVMDALHVERAFALGTSQGGWIVVRMALLAP 120
                 5667778888889**************999988765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.25
                 --TTHHHHHHHHHHHH CS
        AXE1  20 apeDFdefWdkeleel 35 
                 +p++ + fWd++l+ +
  CCE26580.1 187 TPKETQSFWDETLKTV 202
                 6888999******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2119.28
//
Query:       CCE26581.1  [L=1683]
Description: probable clathrin heavy chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-196  644.4  43.3    1.5e-31  109.2   0.8    7.5  7  Clathrin         Region in Clathrin and VPS
    2.8e-31  106.3   0.5    1.1e-06   28.6   0.0    6.7  6  Clathrin_propel  Clathrin propeller repeat
    2.4e-30  104.3   0.2      1e-29  102.2   0.2    2.3  1  Clathrin_H_link  Clathrin-H-link
     0.0035   16.7   0.3      0.011   15.0   0.3    1.8  1  6PF2K            6-phosphofructo-2-kinase
     0.0043   17.7   7.7         61    4.8   0.1    7.2  6  TPR_14           Tetratricopeptide repeat
     0.0047   17.0   0.7        5.9    7.4   0.0    4.8  3  TPR_8            Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.024   15.2   1.0         16    6.1   0.1    5.1  4  TPR_19           Tetratricopeptide repeat
      0.065   13.8   1.3         44    4.7   0.1    4.2  3  RPAP3_C          Potential Monad-binding region of RPAP3
      0.065   13.2   0.3         10    6.1   0.0    3.4  3  VapB_antitoxin   Bacterial antitoxin of type II TA system, Va
      0.093   12.1   0.2       0.27   10.6   0.2    1.9  1  Clathrin-link    Clathrin, heavy-chain linker
       0.16   12.2   8.8        0.8   10.0   0.1    5.9  7  Vps39_1          Vacuolar sorting protein 39 domain 1


Domain annotation for each model (and alignments):
>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   9.9e-22   1.6e-18       5     142 ..     545     684 ..     541     685 .. 0.94
   2 !   80.8   0.1   5.4e-26   8.8e-23       4     142 ..     695     832 ..     692     833 .. 0.93
   3 !  102.4   3.8   1.1e-32   1.8e-29       4     134 ..     843     969 ..     841     977 .. 0.95
   4 !   98.7   0.1   1.6e-31   2.6e-28       2     139 ..     987    1126 ..     986    1130 .. 0.97
   5 !  104.9   1.9     2e-33   3.2e-30       2     142 ..    1136    1274 ..    1135    1275 .. 0.96
   6 !  109.2   0.8   9.4e-35   1.5e-31       1     142 [.    1281    1425 ..    1281    1426 .. 0.97
   7 !  103.8   4.5   4.4e-33   7.2e-30       3     143 .]    1432    1572 ..    1430    1572 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 9.9e-22
                 CTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTS..S---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSS CS
    Clathrin   5 tdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflk..knnnydlekvaklcekadlyeeavilykkinefkk 101
                  +++d++rv ++f+ +g+ ++++ +L ++lke+++e+  lqt+lle+++ + + q++e++l   +++++d++++a+lce+  l + a++ly + + +k+
  CCE26581.1 545 GPMVDFERVCDIFQAQGMVQQATAFLLDALKENKPEHARLQTRLLEMNLNNAP-QVAEAILGndMFSHFDKARIAQLCEQP-LPQKALELYEDPESIKR 641
                 67899***********************************************6.************************985.666************** PP

                 HSSXSSSSHCSCHHH..HTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin 102 aisllkklkdfddai..eyaakvsnpelwekllealldkkpfe 142
                 +i+ +   ++f+ ++  +y++k+s +  +++l  ++  + +++
  CCE26581.1 642 VIVNIPGTSNFNPEWfsNYFGKLSVELSLDCLDAMMKHNIRQN 684
                 **999999******************99999998888777776 PP

  == domain 2  score: 80.8 bits;  conditional E-value: 5.4e-26
                 CCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHT..TXTHS CS
    Clathrin   4 ltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykk..inefk 100
                 +++ +   r+++lfe+++  e l++yL ++++    e+p+++ +++e++ k+ +++e+e++++ +n+y++ekv +++++a+l e+++++  +  +n+++
  CCE26581.1 695 YSELLGPVRLIDLFEKYKTSEGLFYYLGSIVN--LSEDPDVHFKYIEAATKSSQFNEVERICRDSNHYNPEKVKNFLKEAKLPEQLPLIIVCdrFNFVH 791
                 566677889**********************5..4478**************************************************888888***** PP

                 SHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin 101 kaisllkklkdfddaieyaakvsnpelwekllealldkkpfe 142
                 ++i  + + ++  +aie+++++ np   + +l+ lld +++e
  CCE26581.1 792 DLIL-YLYQNQQFQAIEAYVQRVNPGRTPAVLGGLLDVDCDE 832
                 *997.999999999***********************99986 PP

  == domain 3  score: 102.4 bits;  conditional E-value: 1.1e-32
                 CCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSH CS
    Clathrin   4 ltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykkinefkka 102
                 + ++i+++++v ++e++++l+ ll++Le+ l+ ++++ +a+++al+++y+++++  ++e+flk n++yd+ +v+k+cek+d+  +a+i y+k +++ ++
  CCE26581.1 843 NAQQINIDELVSEVETRNRLKILLPFLEATLQAGNQQ-QAVYNALAKIYIDSNN--NPEKFLKDNDQYDTLTVGKYCEKRDPN-LAYIAYSKGQNDLEL 937
                 56789**************************999777.***************7..***************************.*************** PP

                 SSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHH CS
    Clathrin 103 isllkklkdfddaieyaakvsnpelwekllea 134
                 +++++++++++ +++y+ ++s+pelw+++l++
  CCE26581.1 938 VNITNENSMYRAQARYLLERSDPELWNFVLSE 969
                 *****************************987 PP

  == domain 4  score: 98.7 bits;  conditional E-value: 1.6e-31
                  CCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS..--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTT CS
    Clathrin    2 ieltdpidlsrvvklfeeaglleelleyLekvlkedsk..enpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykki 96  
                  +e+tdp  +s  v  f e++l+ el+e+Lek+++e s+  +n++lq++l+ ++ak d+  ++++++ k+++yd++++a  c + +l+eea+++ykk 
  CCE26581.1  987 PESTDPAKVSVAVASFLENDLPLELIELLEKIVLEPSPfsDNQSLQNLLMFTAAKADK-GRVMDYIHKLDSYDADEIATSCIDVGLFEEAFEIYKKA 1082
                  789*********************************99*******************9.************************************** PP

                  XTHSSHSSX.SSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSX CS
    Clathrin   97 nefkkaisl.lkklkdfddaieyaakvsnpelwekllealldkk 139 
                  ++ + a+++ +++  ++d+   ya++v+ pe+w+k+++a+ld  
  CCE26581.1 1083 DNKSAAVDVlVEHVVSIDRSQAYAEEVDIPEVWSKVAKAQLDGL 1126
                  ********88******************************9975 PP

  == domain 5  score: 104.9 bits;  conditional E-value: 2e-33
                  CCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTTXT CS
    Clathrin    2 ieltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykkine 98  
                  i+++dp ++++v++++ +ag+ eel +yL++++k+    +p+++tal+ +ya+ d+++eleefl+ +n  ++e+ ++++ +++l+e ++i y+ i++
  CCE26581.1 1136 IKAEDPKNHTEVIEIATQAGKNEELVKYLRMARKTL--REPIIDTALAFCYARLDQISELEEFLRATNVANIEESGDKAYEEGLFEASKIFYSSISN 1230
                  6889*****************************755..55********************************************************* PP

                  HSSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin   99 fkkaisllkklkdfddaieyaakvsnpelwekllealldkkpfe 142 
                  ++k++++l +l d++ a++ a+k++n ++w+++ ea++ kk+f+
  CCE26581.1 1231 WAKLATTLVHLADYQAAVDCARKANNIKVWKQVHEACVHKKEFR 1274
                  ****************************************9986 PP

  == domain 6  score: 109.2 bits;  conditional E-value: 9.4e-35
                  CCCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---.S-TTHHHHHHHT-SSHHHHHHHHHTT CS
    Clathrin    1 lieltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnn.ydlekvaklcekadlyeeavilykki 96  
                  l+++ d+++l+++vk++e +g+++el+++Le++l + +++++ ++t+l + + ky++ ++l+e++k +++ ++ +k+++ ce+a+l+ e+v++y ++
  CCE26581.1 1281 LNLIVDAEQLQALVKEYEWNGYFDELISLLEQGL-GLERAHMGMFTELGISLSKYHP-ERLMEHIKIFWSrMNMPKMIRACEEANLWPELVFCYYHY 1375
                  68899*****************************.999******************6.*************************************** PP

                  XTHSSHSS.X.SSSSHCSCHHH..HTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin   97 nefkkais.l.lkklkdfddai..eyaakvsnpelwekllealldkkpfe 142 
                  +ef++a+  +  ++++++d++   e+++kv n e+++++++++++++p++
  CCE26581.1 1376 DEFDNAALaViERPENSWDHQQfkEIVVKVANLEIYYRAIKFYVEQHPSL 1425
                  *******9966***********************************9975 PP

  == domain 7  score: 103.8 bits;  conditional E-value: 4.4e-33
                  CCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHH...HHHTT CS
    Clathrin    3 eltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavi...lykki 96  
                  +lt +id++rvvk+f+++++l++++++L +v+   +++ +++++a+++l+++++d++ l +++++++nyd++++a+++ek+dl+ ++ i   +y+k+
  CCE26581.1 1432 SLTTRIDVNRVVKMFKKNDSLPLIKPFLLNVQ---TQNKRIVNEAVNDLLIEEEDYKTLKDSVQNYDNYDANELASRLEKHDLIFFRQIaanIYRKN 1525
                  68899***************************...7889********************************************************** PP

                  XTHSSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHHH CS
    Clathrin   97 nefkkaisllkklkdfddaieyaakvsnpelwekllealldkkpfel 143 
                  ++++k+i l+k++k+++daie+ a + ++e++++ll++++d++++e+
  CCE26581.1 1526 KRWEKSIALSKQDKLYKDAIETSAMSGKSEIVNDLLRYFVDIGHREC 1572
                  ******************************************99876 PP

>> Clathrin_propel  Clathrin propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.9e-06     0.011       3      36 ..      20      56 ..      18      57 .. 0.86
   2 !    9.7   0.0   0.00065       1.1       3      36 ..      63      95 ..      61      96 .. 0.91
   3 !   28.6   0.0   6.8e-10   1.1e-06       2      37 .]     153     191 ..     152     191 .. 0.96
   4 !   12.2   0.0   0.00011      0.18       3      37 .]     204     238 ..     202     238 .. 0.89
   5 !   16.8   0.0   3.7e-06     0.006       6      37 .]     260     291 ..     256     291 .. 0.95
   6 !   14.8   0.0   1.6e-05     0.027       1      37 []     299     333 ..     299     333 .. 0.97

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.9e-06
                     TCEEEECCCEEEEECCEEEEEE...CETEEEEEEEET CS
  Clathrin_propel  3 nsqiinfptatneswlfiiain...gtkkGqvqlysv 36
                      +q i+f ++t es+ ++++++    + ++ v+++++
       CCE26581.1 20 DTQSIGFNSCTLESDSYVCVREkknDAAQSEVVIVEL 56
                     589*******************887777777888776 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00065
                     TCEEEECCCEEEEECCEEEEEE..CETEEEEEEEET CS
  Clathrin_propel  3 nsqiinfptatneswlfiiain..gtkkGqvqlysv 36
                     +++ i++++a+++ ++ iia++   ++   +q++++
       CCE26581.1 63 TRRFIKADSAIMHWNKQIIALKaqSRT---LQIFDL 95
                     6889*******************8888...999997 PP

  == domain 3  score: 28.6 bits;  conditional E-value: 6.8e-10
                      TTCEEEECCCEEEEECCEEEEEE...CETEEEEEEEETT CS
  Clathrin_propel   2 ansqiinfptatneswlfiiain...gtkkGqvqlysve 37 
                      +++qiin++++++ +w + ++i+   g+++G +qlys +
       CCE26581.1 153 NGCQIINYRANEDGKWVVAVGISsqqGRVVGAMQLYSKD 191
                      89***********************************86 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 0.00011
                      TCEEEECCCEEEEECCEEEEEECETEEEEEEEETT CS
  Clathrin_propel   3 nsqiinfptatneswlfiiaingtkkGqvqlysve 37 
                       +     ++a++   lf +a++++++ ++++++v+
       CCE26581.1 204 AFGSLRLEGAPQDTKLFSFAVRTATGAKLHVVEVD 238
                      666777799************************98 PP

  == domain 5  score: 16.8 bits;  conditional E-value: 3.7e-06
                      EEECCCEEEEECCEEEEEECETEEEEEEEETT CS
  Clathrin_propel   6 iinfptatneswlfiiaingtkkGqvqlysve 37 
                       ++fp+a + s ++ ++   tk+G+++ly++e
       CCE26581.1 260 TNDFPVALQISRKYGVIFMVTKYGFIHLYDLE 291
                      79****************************98 PP

  == domain 6  score: 14.8 bits;  conditional E-value: 1.6e-05
                      CTTCEEEECCCEEEEECCEEEEEECETEEEEEEEETT CS
  Clathrin_propel   1 nansqiinfptatneswlfiiaingtkkGqvqlysve 37 
                      n++s +++f+++ +  + +++ in  +kGqv+ ++v+
       CCE26581.1 299 NRISSETIFTSCSDSDSAGLVSIN--RKGQVLFVTVD 333
                      79999*******************..********997 PP

>> Clathrin_H_link  Clathrin-H-link
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.2   6.4e-33     1e-29       1      66 []     359     424 ..     359     424 .. 0.99

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 6.4e-33
  Clathrin_H_link   1 gLpGaddlyvqqFeqllaqgnykeAakvAaespqgiLRtpetIqrfkqvpaqpgqlspllqYFgtL 66 
                      gLpGad+ly +qF+ql+++gny eAak+Aa+sp+g+LRt+etI++fk++p qpg+++  lqYFg+L
       CCE26581.1 359 GLPGADNLYAKQFDQLFNSGNYLEAAKIAANSPRGFLRTAETIEKFKRLPIQPGKMAFTLQYFGML 424
                      8****************************************************************8 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3   6.9e-06     0.011     107     163 ..    1434    1495 ..    1426    1513 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.9e-06
                  -SHHHHHHHHHHHHHTT....-EEEEEEEE--HHHHHHHHHHHHTTTSGGGTTS-HHH.HHH CS
       6PF2K  107 ttrerRklilefveenn....lkvlflesicsdeeiikeNikevklsspDYkdketee.aik 163 
                  ttr + + +++++++n+    +k+++l++ +++++i++e +++ +++ +DYk  +++   ++
  CCE26581.1 1434 TTRIDVNRVVKMFKKNDslplIKPFLLNVQTQNKRIVNEAVNDLLIEEEDYKTLKDSVqNYD 1495
                  89999999********99**********************************9877652444 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.038        61      11      43 ..     557     590 ..     553     591 .. 0.89
   2 ?   -1.2   0.0       3.3   5.5e+03       6      27 ..     792     813 ..     788     823 .. 0.82
   3 ?   -2.2   0.0       6.7   1.1e+04      12      27 ..    1067    1082 ..    1061    1090 .. 0.78
   4 ?    1.1   0.0      0.57   9.3e+02       9      31 ..    1149    1171 ..    1141    1198 .. 0.75
   5 ?    3.9   0.0     0.074   1.2e+02       4      27 ..    1231    1254 ..    1229    1269 .. 0.91
   6 ?    4.2   0.1     0.058        95       2      29 ..    1288    1315 ..    1287    1328 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.038
      TPR_14  11 llalGdpdeAiallrralala.Pddaeawlllaq 43 
                 + a+G  ++A a l +al+ + P++a+++++l +
  CCE26581.1 557 FQAQGMVQQATAFLLDALKENkPEHARLQTRLLE 590
                 6789***************9779******99975 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.3
      TPR_14   6 alaeallalGdpdeAiallrra 27 
                 +l  +l++++++++ +a+ +r+
  CCE26581.1 792 DLILYLYQNQQFQAIEAYVQRV 813
                 6888999*******99999997 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 6.7
      TPR_14   12 lalGdpdeAiallrra 27  
                     G ++eA +++++a
  CCE26581.1 1067 IDVGLFEEAFEIYKKA 1082
                  5668899****99998 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.57
      TPR_14    9 eallalGdpdeAiallrralala 31  
                  e+  ++G+ +e +++lr a ++ 
  CCE26581.1 1149 EIATQAGKNEELVKYLRMARKTL 1171
                  567799***********997743 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.074
      TPR_14    4 llalaeallalGdpdeAiallrra 27  
                  +++la  l +l d+++A++++r+a
  CCE26581.1 1231 WAKLATTLVHLADYQAAVDCARKA 1254
                  99*******************998 PP

  == domain 6  score: 4.2 bits;  conditional E-value: 0.058
      TPR_14    2 eallalaeallalGdpdeAiallrrala 29  
                  e l+al++ ++ +G +de i ll++ l 
  CCE26581.1 1288 EQLQALVKEYEWNGYFDELISLLEQGLG 1315
                  67899*******************9875 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.6   9.7e+02       3      16 ..     882     895 ..     881     899 .. 0.85
   2 ?    2.8   0.0       0.1   1.7e+02       8      27 ..    1063    1082 ..    1061    1084 .. 0.84
   3 !    7.4   0.0    0.0036       5.9       3      30 ..    1230    1257 ..    1228    1258 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.6
                 HHHHHHHHHHHTT- CS
       TPR_8   3 ayynlgsiylklgd 16 
                 +y+ l++iy++ ++
  CCE26581.1 882 VYNALAKIYIDSNN 895
                 79*******98776 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.1
                  HHHHHHTT-HHHHHHHHHHH CS
       TPR_8    8 gsiylklgdyeeAkeyyeka 27  
                  +  +++ g +eeA e y+ka
  CCE26581.1 1063 ATSCIDVGLFEEAFEIYKKA 1082
                  566778899**********9 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0036
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8    3 ayynlgsiylklgdyeeAkeyyekalel 30  
                   + +l+ ++  l dy++A+ + +ka  +
  CCE26581.1 1230 NWAKLATTLVHLADYQAAVDCARKANNI 1257
                  599*********************9665 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.18     3e+02      36      65 ..     558     585 ..     548     591 .. 0.68
   2 ?   -1.0   0.0       1.6   2.6e+03       1      29 [.     797     822 ..     797     836 .. 0.81
   3 ?    6.1   0.1    0.0096        16      11      40 ..     866     895 ..     866     898 .. 0.91
   4 ?   -2.0   0.0       3.4   5.5e+03       7      27 ..    1072    1089 ..    1068    1093 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.18
      TPR_19  36 lalgqldeAealLdalpeedpddaryasLl 65 
                  a+g +++A a L ++++e++   + a+L+
  CCE26581.1 558 QAQGMVQQATAFLLDALKENKP--EHARLQ 585
                 5778888888888777777776..333333 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
      TPR_19   1 llaegdyaeAlalleqalqedpknaearl 29 
                 l++++++++  a+ +++   +p+   a l
  CCE26581.1 797 LYQNQQFQAIEAYVQRV---NPGRTPAVL 822
                 6899************9...999666655 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0096
      TPR_19  11 lalleqalqedpknaearllLAeallalgq 40 
                 l++le+ lq+ ++++++  +LA++++ +++
  CCE26581.1 866 LPFLEATLQAGNQQQAVYNALAKIYIDSNN 895
                 5799***********************998 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 3.4
      TPR_19    7 yaeAlalleqalqedpknaea 27  
                  ++eA +++++a   d+k+a++
  CCE26581.1 1072 FEEAFEIYKKA---DNKSAAV 1089
                  78999999999...7776665 PP

>> RPAP3_C  Potential Monad-binding region of RPAP3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.037        60      12      52 ..     574     614 ..     567     641 .. 0.81
   2 ?    4.7   0.1     0.027        44      22      90 ..     803     870 ..     787     873 .. 0.77
   3 ?   -0.6   0.0       1.2     2e+03      29      82 ..    1139    1196 ..    1070    1200 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.037
     RPAP3_C  12 wrklkredkdlkavllqinpkqlpkiFknsledeilsdild 52 
                 +++ k e+  l+ +ll++n ++ p++ ++ l  +++s + +
  CCE26581.1 574 LKENKPEHARLQTRLLEMNLNNAPQVAEAILGNDMFSHFDK 614
                 4555556666666************************9855 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.027
     RPAP3_C  22 lka...vllqinpkqlpkiFknsledeilsdildalnerlqeekaedsslvleiLdrLskvkRFdmlvmfls 90 
                  +a   ++ ++np + p +++ +l++++ + +++ l + +++++ +    + e  ++  + +R ++l+ fl+
  CCE26581.1 803 FQAieaYVQRVNPGRTPAVLGGLLDVDCDENMIKQLLSTVNAQQIN----IDELVSEVETRNRLKILLPFLE 870
                 4445525555************************999998886544....6777777777777777777776 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.2
     RPAP3_C   29 inpkqlpkiFknsledeilsdildalnerlqeekaeds......slvleiLdrLskvkRF 82  
                   +pk+  ++++   ++   ++++++l+ + ++ ++  +      +++++ Ld++s+++ F
  CCE26581.1 1139 EDPKNHTEVIEIATQAGKNEELVKYLRMARKTLRE--PiidtalAFCYARLDQISELEEF 1196
                  55566666666666555556666655555555332..23456667888888888888877 PP

>> VapB_antitoxin  Bacterial antitoxin of type II TA system, VapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.063     1e+02       7      29 ..    1067    1090 ..    1066    1094 .. 0.88
   2 ?   -2.9   0.0       4.2   6.9e+03      27      39 ..    1469    1481 ..    1465    1488 .. 0.74
   3 ?    6.1   0.0    0.0063        10       9      36 ..    1538    1565 ..    1537    1574 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.063
                      XXXXXXXXXXXXXX.XXXXXXXXX CS
  VapB_antitoxin    7 iDDeLlaeAirltg.lktKrEaVn 29  
                      iD  L++eA+++++    K++aV+
      CCE26581.1 1067 IDVGLFEEAFEIYKkADNKSAAVD 1090
                      66679*********8999999996 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.2
                      XXXXXXXX----- CS
  VapB_antitoxin   27 aVnlALreLiqrr 39  
                      +Vn+A+ +L+ ++
      CCE26581.1 1469 IVNEAVNDLLIEE 1481
                      6899998887554 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0063
                      XXXXXXXXXXXXXXXXXXXXXXXXXX-- CS
  VapB_antitoxin    9 DeLlaeAirltglktKrEaVnlALreLi 36  
                      D+L ++Ai+ + +++K+E+Vn  Lr ++
      CCE26581.1 1538 DKLYKDAIETSAMSGKSEIVNDLLRYFV 1565
                      99*******************9998887 PP

>> Clathrin-link  Clathrin, heavy-chain linker
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00017      0.27       1      24 []     334     357 ..     334     357 .. 0.98

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
  Clathrin-link   1 EdnIIPYIlntLnNpdLALrlAsR 24 
                    E +IIPY l +  N++ A++lAsR
     CCE26581.1 334 ETTIIPYLLENPANTEIAIKLASR 357
                    88*********************9 PP

>> Vps39_1  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.31   5.1e+02      15      44 ..     748     777 ..     740     809 .. 0.81
   2 ?   -2.7   0.1       4.4   7.1e+03      13      48 ..     831     868 ..     820     907 .. 0.62
   3 ?   -1.5   0.0       1.9   3.1e+03      58     101 ..    1011    1063 ..     953    1074 .. 0.64
   4 ?   -1.8   0.0       2.3   3.8e+03      42      68 ..    1072    1098 ..    1043    1111 .. 0.75
   5 ?   10.0   0.1   0.00049       0.8       1      67 [.    1176    1243 ..    1176    1266 .. 0.81
   6 ?   -1.2   0.0       1.5   2.5e+03      37      73 ..    1360    1397 ..    1347    1414 .. 0.68
   7 ?   -0.9   0.0       1.2   1.9e+03       6      40 ..    1415    1450 ..    1410    1469 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.31
     Vps39_1  15 klvgpLlrleNaCdlkdveeiLkkekkyke 44 
                 ++v  ++r +N+ ++++v+++Lk++k  ++
  CCE26581.1 748 NEVERICRDSNHYNPEKVKNFLKEAKLPEQ 777
                 6788899999************88775544 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.4
     Vps39_1  13 kpklvgpLlrleNaCdl..kdveeiLkkekkykeLidl 48 
                 +++++ +Ll + Na ++  ++     + ++++k L+ +
  CCE26581.1 831 DENMIKQLLSTVNAQQIniDELVSEVETRNRLKILLPF 868
                 45566666666665443003334444455555544444 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.9
     Vps39_1   58 ALeLlkelade.....deedeedsslkgeket.........iiqylqklseedldlil 101 
                   +eLl++++ e     d     ++sl++             +++y +kl++ d d+i 
  CCE26581.1 1011 LIELLEKIVLEpspfsD-----NQSLQNLLMFtaakadkgrVMDYIHKLDSYDADEIA 1063
                  56667776666433222.....222222211123334556689999999999988885 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.3
     Vps39_1   42 ykeLidlYygkklheeALeLlkelade 68  
                  ++e ++ Y++  + ++A+++l+e + +
  CCE26581.1 1072 FEEAFEIYKKADNKSAAVDVLVEHVVS 1098
                  566678899999999999998887775 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 0.00049
     Vps39_1    1 iDTaLlkvYlkt.kpklvgpLlrleNaCdlkdveeiLkkekkykeLidlYygkklheeALeLlkelad 67  
                  iDTaL  +Y+++ + +++ ++lr  N  +++++     +e  +++  ++Y + ++ ++  + l++lad
  CCE26581.1 1176 IDTALAFCYARLdQISELEEFLRATNVANIEESGDKAYEEGLFEASKIFYSSISNWAKLATTLVHLAD 1243
                  8***********8899****************999988888888888888877776666666666666 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 1.5
     Vps39_1   37 kkekkykeLid.lYygkklheeALeLlkeladedeede 73  
                  ++++ + eL+  +Y++ + +++AL ++++  ++ ++++
  CCE26581.1 1360 EEANLWPELVFcYYHYDEFDNAALAVIERPENSWDHQQ 1397
                  67788889986266678889999999887777633333 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 1.2
     Vps39_1    6 lkvYlktkpklvgpLlrle.NaCdlkdveeiLkkek 40  
                  +k Y++++p+l+ +Ll     + d++ v ++ kk+ 
  CCE26581.1 1415 IKFYVEQHPSLLTDLLASLtTRIDVNRVVKMFKKND 1450
                  589***********9976548888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1000  (0.0557756); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.98u 0.27s 00:00:01.25 Elapsed: 00:00:00.45
# Mc/sec: 11232.37
//
Query:       CCE26582.1  [L=917]
Description: related to dipeptidyl aminopeptidase B [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-99  333.6   0.1    1.4e-99  333.2   0.1    1.1  1  DPPIV_N        Dipeptidyl peptidase IV (DPP IV) N-terminal re
    5.4e-50  169.8   0.3    1.1e-49  168.8   0.3    1.5  1  Peptidase_S9   Prolyl oligopeptidase family
     0.0014   19.3   3.7       0.13   12.8   2.4    2.5  2  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.025   13.3   0.0       0.44    9.2   0.0    2.6  2  AXE1           Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> DPPIV_N  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.2   0.1  3.1e-103   1.4e-99       1     354 []     228     611 ..     228     611 .. 0.96

  Alignments for each domain:
  == domain 1  score: 333.2 bits;  conditional E-value: 3.1e-103
                 TTTSSEEEEEECEEEESSSEETTEEEEEETTTEECEEEETT..TT.BSEEEEESSTTEEEEEETTEEEEESTTTS..........EEEECES-STTTEE CS
     DPPIV_N   1 spdgkflllatnaeknwRhsytaeyyiydletneveelspg..eeklqlakwSPagdklafvrnnnLyvrelatg..........keiqlTsdgsagif 87 
                 spd+k++lla  +eknwR+s+ta+y+i+ + ++ +e+l p+   +++qla+wSP++d+++f+ nnnLy+r+l  +            i++T+dg  ++f
  CCE26582.1 228 SPDLKKVLLAIHREKNWRYSFTATYFIFHVDSGIAEPLVPNndGATVQLANWSPQSDAVSFTMNNNLYIRRLNGSsggegggakeDLITITKDGGPEYF 326
                 79***************************************98899************************886544444455545679*********** PP

                 ESB--HHHHHHTSSSSBEEEE-TTSSEEEEEEEECTTS-EEEEEESSSSC-.........SS-EEEEEE--BTTS---EEEEEEEECTTSCEEECS-HH CS
     DPPIV_N  88 nGvadWvyeEEvlgsnsavwWspdgsrlaylrfdeseVpeitlpsytdees.........qypevksikYPkaGsknpkVelkvvdlasgktvevqlpd 177
                 +G++dWvyeEEv++ +sa+wWs dg++la+l ++e++Vpe+ + +y ++ s         +yp  ++ikYPk+G++np V+++ +d+++g++++v++ d
  CCE26582.1 327 YGIPDWVYEEEVFSGRSATWWSSDGKYLAFLWTNETAVPEYAIEYYVQRPSgkkplageeAYPDIRKIKYPKPGAHNPVVNVQYYDVSKGEVFSVSPTD 425
                 *************************************************999*********************************************** PP

                 HHCTTCEEEEEEEECTTSCCEEEEEEETTSTEEEEEEEETTTCCEEEEE....EEESSS-SSS-S-EEE-......TTTSSEEEEEEETTSSEEEEEEE CS
     DPPIV_N 178 slsekdeyitrvkWtsdeksllvqwlnRsqnrlkvvlvdaetgravvkl....eetsdgWvelhdevhfl......krdesgflwisekdGfkHLylfd 266
                  + ++ ++i++v W+ d k +lv+  nR  + lkv lvd+++++a++++     + + gW++++++++++      +r ++g+++++ ++G++H+ +f+
  CCE26582.1 426 GFPDDNRIISNVLWSGD-K-VLVKQSNRVGDFLKVLLVDPAARQAKTVHsvniADIDGGWFDISQTMTYVpadpsrGRPQDGYVDTVIHEGYEHIGYFT 522
                 **************888.5.9*******************9999999999999********************************************** PP

                 SSS-C.EEESS-SSS-EEE.EEEEETTTTEEEEEESSSETTEBEEEEEESSCTTEEEESSTTTSEE.EEEEE-TTSSEEEEEEESSSSSE CS
     DPPIV_N 267 ldgkseikqlTsGeweVts.ilavdekrdlvyFtatkdsPlerhlYsvslesggeltrltdeegdh.ysasfspsgkyyvlkysgpdtpp 354
                   ++ ++++lTsG weV++ + a+d +++lvyF +tk+s+++rh+Ysv+l+ g  lt ltd++ +  y +sfs+++ +++l+y+gp++p+
  CCE26582.1 523 PLDNPKPIMLTSGRWEVEDaPSAIDLANNLVYFVGTKESSIQRHVYSVKLD-GSHLTPLTDTSSEAyYGVSFSSNAGFALLSYKGPKIPY 611
                 *99999***********999*******************************.************************************96 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   0.3   2.5e-53   1.1e-49       3     211 ..     697     901 ..     695     902 .. 0.97

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 2.5e-53
                   --HHHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHH.H-GGG-SEEEEESE- CS
  Peptidase_S9   3 fsselqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaaln.qrpdlFkaavaevpv 98 
                   +++++++++++Gy vv +++rG+g  G++ +  ++ + g  e++D iaaa++ a+  yvd++rlai+G+SyGG+ t+ +l+ ++++++++++a++pv
    CCE26582.1 697 VDFQAYVASALGYLVVTIDPRGTGFLGRQHRVPVRSHIGILEAQDHIAAARHYASLPYVDPSRLAIWGWSYGGFQTLKTLEqDAGQTYSYGMAVAPV 793
                   56789999*************************************************************************99************** PP

                   --CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-S.EEEEEETTS-SSTTSSHHH CS
  Peptidase_S9  99 vdvlrydsdtdllteeymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgkn.vlllifpdegHgvgkprak 194
                   +d++ yds    +te+ym  ++   n++gy ++ ++++++++  ++++L++hG aDd+v+++++l+l++ L+ +  + +++++fpd++H+++ + a+
    CCE26582.1 794 TDWRFYDSI---YTERYMRLPQD--NPAGY-DATAIRNATALGMNKRFLIMHGSADDNVHFQNSLRLLDILDLQSIEnYDVHVFPDSDHSIRFHGAS 884
                   *********...*******9876..*****.99********99*****************************888888******************* PP

                   HHHHHHHHHHHHHHCT- CS
  Peptidase_S9 195 veelarllaFlkealgk 211
                      ++rl ++l +a++ 
    CCE26582.1 885 LMVYHRLNNWLINAFNG 901
                   ************99985 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   2.4   2.9e-05      0.13      20      95 ..     704     792 ..     695     804 .. 0.58
   2 !    5.8   0.0    0.0043        19     131     209 ..     794     878 ..     776     886 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.9e-05
                    HHHHCCTCEEEEE--TTST...S-GGCS....--HHHCHHHHHHHCCTT......TTSEEEEEETCHHHHHHHHHHCC......EEEEES- CS
  Abhydrolase_6  20 aallaagvhvlapDlpGhG...rsdppp....ldledladlaalldelaa....gggpvvlvGHSlGGalalaaapla....lvvgvlldp 95 
                    a +l+  v  +++D +G+G   r+++ p     +  +++d  a++++ a+    ++ +  ++G+S+GG+  l ++ +        g +++p
     CCE26582.1 704 ASALGYLV--VTIDPRGTGflgRQHRVPvrshIGILEAQDHIAAARHYASlpyvDPSRLAIWGWSYGGFQTLKTLEQDagqtYSYGMAVAP 792
                    44444447..9*******74444433333222222222444444444444888999999**********8888333333433333355555 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0043
                    HS.CCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGC.....EEE.CTT-CHHHHCHHCCCH.........STTEEETCE...SSS-H CS
  Abhydrolase_6 131 pr.lfladedadaawrarlarlaallaglgllpaaawadlpvpl.....lvl.ggeDplvprllerlla.........qagarlpvvlpgaGHlp 209
                    ++ +f++      ++++r+ rl++  ++ +   a+a++ ++++      l++ g++D+ v+  ++  l+         ++ +++ +v+p+++H++
     CCE26582.1 794 TDwRFYD-----SIYTERYMRLPQDNPAGY--DATAIRNATALGmnkrfLIMhGSADDNVH--FQNSLRlldildlqsIENYDV-HVFPDSDHSI 878
                    3347788.....888888888888888777..34477777777777776555579999888..776666644522444455555.********65 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.068   3.1e+02     272     300 ..     615     643 ..     609     653 .. 0.81
   2 ?    9.2   0.0   9.9e-05      0.44     157     188 ..     741     772 ..     655     780 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.068
                 SS-HHHHHHHHHH--SSEEEEEETT-STT CS
        AXE1 272 vcpPstvfaaynkletekeikvyeefahe 300
                 ++ Pst +a yn+   +  +   +  +he
  CCE26582.1 615 ISTPSTTHASYNRTIEDNAVLADRAKEHE 643
                 789*********99888777666666666 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 9.9e-05
                 HHHHHHHHHHTSTTEEEEEEEEEEETHHHHHH CS
        AXE1 157 DavrlveivaslpevDeeRvavlGasqGGala 188
                 D + +++  aslp vD++R+a+ G+s GG  +
  CCE26582.1 741 DHIAAARHYASLPYVDPSRLAIWGWSYGGFQT 772
                 6778899999******************9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 6292.24
//
Query:       CCE26583.1  [L=155]
Description: probable ISU1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-49  167.2   0.1    2.1e-49  166.9   0.1    1.1  1  NifU_N    NifU-like N terminal domain


Domain annotation for each model (and alignments):
>> NifU_N  NifU-like N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.9   0.1   1.2e-53   2.1e-49      12     126 ..      19     132 ..      14     135 .. 0.98

  Alignments for each domain:
  == domain 1  score: 166.9 bits;  conditional E-value: 1.2e-53
                 SSSSBSS-TTSSS--EEEEEEETTTTEEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHCCCCHHHHHHHHTCSCSSSCHCSCH CS
      NifU_N  12 nPrnvGvleeedakvgvgevgapacGDavrLqikvdeetdriedakFktfGCgsaiAssslltelvkgktleealkitnkeiaeelgglpkeklhcsvl 110
                 +Prn G+++++d+ vg+g vgapacGD+++Lqi+vde+t+ i+dakFktfGCgsaiAsss+ltelvkg++le+a+ki+n +i +el+ lp++klhcs+l
  CCE26583.1  19 KPRNPGSMDKKDPAVGTGLVGAPACGDVMKLQIRVDEATGTITDAKFKTFGCGSAIASSSYLTELVKGMRLEDASKIRNVDISKELC-LPPVKLHCSML 116
                 7**************************************************************************************.*********** PP

                 HHHHHHHHHHHHHHHC CS
      NifU_N 111 aedalkaavkkYkakk 126
                 aeda+kaa+++Y+ k+
  CCE26583.1 117 AEDAIKAAIADYHVKN 132
                 *************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1220.18
//
Query:       CCE26584.1  [L=676]
Description: probable trehalase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.3e-115  385.2   2.1   5.5e-114  381.8   2.1    1.9  1  Trehalase  Trehalase
    0.00038   19.5   0.0    0.00068   18.7   0.0    1.3  1  GDE_C      Amylo-alpha-1,6-glucosidase


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.8   2.1  6.2e-118  5.5e-114       3     509 ..      52     626 ..      50     629 .. 0.89

  Alignments for each domain:
  == domain 1  score: 381.8 bits;  conditional E-value: 6.2e-118
                 TTSTCCCCCGCCTS-HHHHHHHHHCHHCCHHEE..TTTTHHHHHHHHCE-SGGGS.EEE-TT-HHHHHHHHHHHCTGGHH.EECCHHCCTTCCCCHTTT CS
   Trehalase   3 fgdkktfvDearlsevdrllrlikaslekaltrridkedlkkfvedtfeetgselerivpkdekeqpeyflkkaedeelrleaeelnklwkalvrkikk 101
                 f d+ktfvD++  + + ++ +++ ++lek l    ++  l++f++ +f+++g+ele++ + + + +p+ fl+k +d+ +++++ ++ + w++l+r  + 
  CCE26584.1  52 FADSKTFVDMPAIR-PLKVIQEAFDKLEKPL---KNDTALHNFLSTYFADAGQELEQVPKANLTTDPQ-FLDKLNDTVIKEFVTKVIEIWPDLTRTYSG 145
                 89**********98.6666666667777755...48999****************8887778888888.**************************9999 PP

                 S-SCE-T.TECEEE-TT-EE-SBTTB-S-BCCHHHHHHHHHHHTT-..HHHHHHHHHHHHHHHHHHSS--SBSBGGGTT---S--HHHHHHHHHHHCHC CS
   Trehalase 102 kvgllpe.assllplpkpfvVPGgRFrElYyWDsYfvilGLleskk..vdlakgmvenfiyliekYGkilNgnRsYYlsRSQPPlltdmvlrvyekted 197
                 + ++ ++  ss +p+++pfvV GgRFrE YyWDsY++ +GLl +k   +++ak+ +enf+  +e++G+++Ng+R+YYl+RSQPPll++mv++++e+t+d
  CCE26584.1 146 SGSNCSDcPSSFIPVKRPFVVAGGRFREPYYWDSYWILEGLLRTKGsfTEIAKNTIENFLDFVEQFGFVPNGARVYYLNRSQPPLLSQMVKLYIEHTND 244
                 8887766258899*****************************98743379************************************************* PP

                 CHHHHHHHHHHHHHHHCCTTTCCETTCCC-CTC-EEE--SSSTTS-TCCCHHHHHHHHHCTT...............HCCHHHHHCCCCHHHHHCCHHC CS
   Trehalase 198 dallravlaalkkeyefwmaeqrldevtklskryllnrygvpeetprpesyledketaeklk...............kerkkeevyrelkaaaesgwdl 281
                 + +l ++l+ l ke++fwm ++r++ev+ + k+++lnry v++ +prpes +ed ++a + +               +e+++ e+y+  + +aesg+d+
  CCE26584.1 245 TSILDRALPLLVKEHDFWM-TNRTVEVEANGKTHRLNRYAVSNTQPRPESFREDYQMATNSSyyaksgiiyperkklNESERMELYSSFAGSAESGMDF 342
                 *******************.9***************************************9999**********999999999**************** PP

                 HHHHCCCCTT-S.T.....CCCCTGGGEE-HHHHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE--EETTTT........ CS
   Trehalase 282 ssRwlresghdtge.....llelrtaklvpvDLNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvylDYdlkkk........ 367
                 ssRwl++ ++d+++     l ++  ++++pv LN++ly +e  ia+f +++g+s+ ++e+ ++a++r +ai++v+Wne    y+DY++ ++        
  CCE26584.1 343 SSRWLAN-PSDSARdvyfpLRSNGPKNVIPVCLNSILYGNEVAIAQFFNQTGNSTAASEWMHMADTRSEAIHAVMWNETLFSYFDYNITSSaqniytir 440
                 ******9.333332222336778889***************************************************************9999****** PP

                 ..............EE----BGGGGHHHHCT-S-HHHHHHHHHHCHHHHCCCCCEES.CCCC-SBSSS-SSTTSTTEEEHHHHHHHHHHHHHTT-.... CS
   Trehalase 368 ..............kqtnyesatnlvpLwaglaskeqaaklvakvlekleesgllva.egglgtsllksgrQWDyPngWaPlqilavegleryge.... 447
                                ++  +++  ++p w g+a    +++  a ++ +++ +  l+a +gg++t+ ++++ QWD Pn+W+ + ++++ gl +       
  CCE26584.1 441 dddslpsdentappGHQVVFHMGQFYPFWQGAAPAYLKNNPHAVKTVYARVADYLRArPGGIPTTNIQTSTQWDQPNVWPSMMHVLMVGLLKTPPtfge 539
                 **********999988889***************999888888888888889999988********************************998767777 PP

                 ........HHHHHHHHHHHHHHHHHHH.................HHC.TSEBSCEETTSTSTTBTT-SSSSTTCSBHHHHHHHHHHHC CS
   Trehalase 448 ........eelaerlaerwlktvtkaf.................sde.gklvEKYdvtreaeygGgggeyvlqeGFGWvNgvvlelLe 509
                         ++ a +l++r+l + + ++                 ++e g+++EKY  +  ++ g  ggey++ eGFGW+Ngv ++  +
  CCE26584.1 540 ddpsykdvRKTALTLGQRYLDSTFCTWyatggstsatpklqgltDKEqGIMFEKYSDSALNRAG-SGGEYEVVEGFGWTNGVLMYAAD 626
                 999999999***********987655422233222222222222333689*****998666666.*****************988655 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   7.5e-08   0.00068      34     117 ..     175     256 ..     158     307 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 7.5e-08
       GDE_C  34 WGRDtfIaLsGllLvtgrfee.AreilltFaktlrh.GliPNlldegqealyntvdaslwlieaiekYleyagdaeilrriypvlq 117
                 +  D+   L+Gll ++g f e A++ +++F++++ + G +PN    g   +y  + ++  l + ++ Y+e ++d++il r++p l 
  CCE26584.1 175 YYWDSYWILEGLLRTKGSFTEiAKNTIENFLDFVEQfGFVPN----GARVYYLNRSQPPLLSQMVKLYIEHTNDTSILDRALPLLV 256
                 555888889**********877**********87644*****....5699********************************9653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4882.99
//
Query:       CCE26585.1  [L=682]
Description: probable trehalase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.1e-115  385.5   1.4   4.1e-114  382.2   1.4    1.9  1  Trehalase  Trehalase
    0.00061   18.8   0.3     0.0013   17.7   0.3    1.5  1  GDE_C      Amylo-alpha-1,6-glucosidase


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.2   1.4  4.5e-118  4.1e-114       3     509 ..      52     626 ..      50     629 .. 0.89

  Alignments for each domain:
  == domain 1  score: 382.2 bits;  conditional E-value: 4.5e-118
                 TTSTCCCCCGCCTS-HHHHHHHHHCHHCCHHEE..TTTTHHHHHHHHCE-SGGGS.EEE-TT-HHHHHHHHHHHCTGGHH.EECCHHCCTTCCCCHTTT CS
   Trehalase   3 fgdkktfvDearlsevdrllrlikaslekaltrridkedlkkfvedtfeetgselerivpkdekeqpeyflkkaedeelrleaeelnklwkalvrkikk 101
                 f d+ktfvD++  + + ++ +++ ++lek l    ++  l++f++ +f+++g+ele++ + + + +p+ fl+k +d+ +++++ ++ + w++l+r  + 
  CCE26585.1  52 FTDSKTFVDMPAIR-PLKVIQEAFDKLEKPL---KNDTALQNFLSTYFADAGHELEQVPKANLTTDPQ-FLDKLNDTVIKEFVTKVIDIWPDLTRTYSG 145
                 89**********98.6666666667777755...48999************99998887777788887.**************************9998 PP

                 S-SCE-T.TECEEE-TT-EE-SBTTB-S-BCCHHHHHHHHHHHTT-..HHHHHHHHHHHHHHHHHHSS--SBSBGGGTT---S--HHHHHHHHHHHCHC CS
   Trehalase 102 kvgllpe.assllplpkpfvVPGgRFrElYyWDsYfvilGLleskk..vdlakgmvenfiyliekYGkilNgnRsYYlsRSQPPlltdmvlrvyekted 197
                 + ++ ++   s +p+++ fvV GgRFrE YyWDsY++ +GLl +k   +++ak+ +enf+  +e++G+++Ng+R+YYl RSQPPll++mv++++e+t+d
  CCE26585.1 146 SGSNCSDcPNSFIPVNRTFVVAGGRFREPYYWDSYWILEGLLRTKGsfTEIAKNTIENFLDFVENFGFVPNGARVYYLDRSQPPLLSQMVKLYIEHTND 244
                 8877766257899*****************************98743379************************************************* PP

                 CHHHHHHHHHHHHHHHCCTTTCCETTCCC-CTC-EEE--SSSTTS-TCCCHHHHHHHHHCTT...............HCCHHHHHCCCCHHHHHCCHHC CS
   Trehalase 198 dallravlaalkkeyefwmaeqrldevtklskryllnrygvpeetprpesyledketaeklk...............kerkkeevyrelkaaaesgwdl 281
                 + +l ++l+ l ke++fwm ++r++ev+ + k++ lnry v++ +prpes +ed ++a + +               +e+++ e+y++ + +ae+g+d+
  CCE26585.1 245 TSILDRALPLLVKEHDFWM-TNRTVEVEANGKTHCLNRYAVSNTQPRPESFREDYQMATNSSyyaksgiiyperkklNESERMELYSNFATSAENGMDF 342
                 *******************.9***************************************9999**********999999999**************** PP

                 HHHHCCCCTT-S.T.....CCCCTGGGEE-HHHHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE--EETTTT........ CS
   Trehalase 282 ssRwlresghdtge.....llelrtaklvpvDLNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvylDYdlkkk........ 367
                 ssRwl++ ++d+++     l ++r +++vpv LN++ly +e  ia+f +++g+s+ ++e+  +a++r +ai++v+Wne    y+DY++ ++        
  CCE26585.1 343 SSRWLAN-PSDSARdvyfpLRSNRPKSIVPVCLNSILYGNEVAIAQFFNQTGNSTAASEWMDMADARSEAIHAVMWNETLFSYFDYNITSSaqniytir 440
                 ******9.444332233447899******************************************************************9999****** PP

                 ..............EE----BGGGGHHHHCT-S-HHHHHHHHHHCHHHHCCCCCEES.CCCC-SBSSS-SSTTSTTEEEHHHHHHHHHHHHHTT-.... CS
   Trehalase 368 ..............kqtnyesatnlvpLwaglaskeqaaklvakvlekleesgllva.egglgtsllksgrQWDyPngWaPlqilavegleryge.... 447
                                ++  ++   ++p w g+a    +++  a ++ + + +  l+a +gg++t+ +++ +QWD Pn+W+Pl + ++ gl +       
  CCE26585.1 441 dddslpsdentappGHQVVFHIGQFYPFWQGAAPAYLKNNPHAVKTVYSRVADYLRArPGGIPTTNVQTPEQWDQPNVWPPLMHTLMAGLLKTPPtfge 539
                 **********9999888899***************99888888888888999999999*********************************98767777 PP

                 ........HHHHHHHHHHHHHHHHHHH.................HHC.TSEBSCEETTSTSTTBTT-SSSSTTCSBHHHHHHHHHHHC CS
   Trehalase 448 ........eelaerlaerwlktvtkaf.................sde.gklvEKYdvtreaeygGgggeyvlqeGFGWvNgvvlelLe 509
                         ++ a +l++r+l + + ++                 ++e g+++EKY  +  ++ g  ggey++ eGFGW+Ngv ++  +
  CCE26585.1 540 ddpsykdvRKTALTLGQRYLDSTFCTWyatggstsatpklqgltDKEtGIIFEKYSDSALNRAG-SGGEYEVVEGFGWTNGVLIYAAD 626
                 999999999***********98765552222222222222222133368999999988666666.*****************998765 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.3   1.5e-07    0.0013      34     115 ..     175     263 ..     159     415 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.5e-07
       GDE_C  34 WGRDtfIaLsGllLvtgrfee.AreilltFaktlrh.GliPNlldegqealyntvdaslwlieaiekYleyagdaeilrriyp.........v 115
                 +  D+   L+Gll ++g f e A++ +++F++++ + G +PN    g   +y  + ++  l + ++ Y+e ++d++il r++p         +
  CCE26585.1 175 YYWDSYWILEGLLRTKGSFTEiAKNTIENFLDFVENfGFVPN----GARVYYLDRSQPPLLSQMVKLYIEHTNDTSILDRALPllvkehdfwM 263
                 555888889**********877**********98744****9....5699*********************************5555555541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4668.61
//
Query:       CCE26586.1  [L=1232]
Description: DNA-directed RNA polymerase I 135K chain UN-18 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.5e-109  364.8   0.0   7.5e-109  364.4   0.0    1.2  1  RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
    3.3e-34  118.2   0.0    5.2e-34  117.5   0.0    1.2  1  RNA_pol_Rpb2_1  RNA polymerase beta subunit
    5.8e-29  100.1   0.0    1.8e-28   98.5   0.0    1.9  2  RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
    9.1e-26   90.7   0.0    1.6e-25   89.8   0.0    1.4  1  RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
    4.1e-25   87.5   0.0    8.9e-25   86.5   0.0    1.6  1  RNA_pol_Rpa2_4  RNA polymerase I, Rpa2 specific domain
      2e-16   60.2   0.0    4.3e-15   55.9   0.0    2.4  1  RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
  ------ inclusion threshold ------
       0.17   12.0   1.1       0.32   11.1   1.1    1.4  1  DZR             Double zinc ribbon


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.4   0.0  2.9e-112  7.5e-109       1     390 []     700    1077 ..     700    1077 .. 0.89

  Alignments for each domain:
  == domain 1  score: 364.4 bits;  conditional E-value: 2.9e-112
                      HHHT-SS-TTB-HHHHHHHHHHGGGB-S---TTTTT---SSEEEESS----SSB-S.TTTTTS........GGGS-SEEEEEBBBS--TTTTT CS
  RNA_pol_Rpb2_6    1 vaklapvvehvqspriiiqaamekqalgiyslnkfkrsnqktyllcinqkPlvktgdkveagqvldgpatekgelalGqnavVAvmsyeGYni 93  
                      +a+ +p+++ +qspr+++q++m+kq++g+  +   +r+++k y++++ q+P+v+    ++ ++        ++++++G na+VAv+sy+GY++
      CCE26586.1  700 LANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAALRYRTDNKAYRIQTGQTPIVRAP-LHNTYG--------FDNFPNGMNAIVAVISYTGYDM 783 
                      5899****************************************************.999999........********************** PP

                      TT-EEEBCHHHHTTTT-EEEEEE..EEE--SSSS-..--.-S--..-......-SS-GGGS-TTSB--SS-EEETT-EEE---..B-----.. CS
  RNA_pol_Rpb2_6   94 EDaiilnerlvdrdvftsihikeyeveardtklge..eeitrdipnv......seealkkLdedGivrvgaevkegdilvgkvtkgeteltpe 178 
                      +Da+iln+++ +r++ + +++k+++++ +d ++++  +++t+           s +  + Ld+dG++++g+ ++egd+++   t     +tp+
      CCE26586.1  784 DDAMILNKSAHERGFGHGTIFKTKKISLKDDSRSRasKSVTKAFG-FaphsyvSADYQAMLDDDGLPHIGRLLQEGDVICAWHT-----VTPD 870 
                      ***********************9999944443332233333222.12444668999999********************9964.....2221 PP

                      .-----------..-B---EE--TT-EEEEEEEEE.......EE-TT--EEEEEEEEEEE---TT-BEEETTS---BBEEEB-TTTSEEETTS CS
  RNA_pol_Rpb2_6  179 ekllraifgekarevkdtslrvksgeegvVdkvkvfsrekgdelkagvnklvkvyvaqkRklqvGDKfasrhGqKGvvslilpqeDmPfledG 271 
                              +  + +  ++  ++k++e+++V++v++     g+e+ ++  ++v ++++  R + +GDKf+srhGqKGv s+ +p  D+Pf e+G
      CCE26586.1  871 -----YNGNLVNLDGITHYEKYKDSETTFVEEVRL----IGAESGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQKGVASQKWPAIDLPFSESG 954 
                      .....111222233566677899999*********....688888999********************************************* PP

                      ---SEEE-GGGCHHH-BTTHHHHHHHHHCCCSSSS--B--TT-.......-HHHHHHHHHTTS-TT-EE-EEETTTS-B-SS-EEB-EEEEEE CS
  RNA_pol_Rpb2_6  272 ivvDivlNPlgvPSRmtigqllEtllgkaaalegkkvdatvFdgak....eeeikelLeeagleasGkevlydGrtGekleaeifvGviYylk 360 
                      +++D+++NP+++PSRmtig+ +E+l+gka+al+g   d+t+F+ ++     +++ ++L +ag++++G+e +y+G+tGe+l a+i++Gv+Yy++
      CCE26586.1  955 MQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGLAQDSTPFQFSEentaADYFGHQLMKAGYNYHGNEPMYSGTTGEELAADIYIGVVYYQR 1047
                      *******************************************977666449***************************************** PP

                      BS--CCCS----SS--B-TTT--B-SCGGG CS
  RNA_pol_Rpb2_6  361 LkhlvedKihaRstGpyslltqQPlgGkaq 390 
                      L+h+v+dK+++R+tGp+   t QP++G+++
      CCE26586.1 1048 LRHMVNDKFQVRTTGPVVPTTGQPIKGRKR 1077
                      ****************************86 PP

>> RNA_pol_Rpb2_1  RNA polymerase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   0.0     2e-37   5.2e-34       3     184 ..      40     431 ..      38     445 .. 0.94

  Alignments for each domain:
  == domain 1  score: 117.5 bits;  conditional E-value: 2e-37
                     THHHHHHHHHHHHTHHHHHCTTSSECCHCSSSHCSSSC.........EEEEEEEEEEESCSSEC..TTSCEEES.HHHHHHCTSBXEEEEEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1   3 vsqqldSFnkfveqdlekiikeeaaieseeeiqssgee.........lelkfvsirlgkPvvde..sdasereiyPkearlrnltYsaplyvklk 86 
                     v ++++SFn++ ++d +    ++  + +  +    g+e         l++  +++ l++P v    + a++++++P e+r+r+++Y+++l+   +
      CCE26586.1  40 VDPHIESFNAIFRNDEKPGLLAHGLVDIGTKTYLDGDEntasedknrLQIRIKDVILQRPQVPPsnKAARNQQVFPAECRERHVSYRGKLSATFE 134
                     789********999999999999999999987766666788889999**************98833558999*********************** PP

                     EEECCCCTCCEEEEEEEEEEEEEXBTTSTTSSSTTS.HHHHHHTTS.TTS..SSEEETTCEEEEXEEEE.......................... CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
  RNA_pol_Rpb2_1  87 lvvyekdnkeeikeeevyiGelPlMlrskacvlseaseeelvelkEcpldqGGyFiinGtekvivaqek.......................... 155
                     ++v    n+ +  e   ++G++P+M++s++c+l+++s++ lve kE++++ GGyF++nG+ek+i+ +                            
      CCE26586.1 135 YRV----NGGDPLEFTRELGQVPIMIKSNRCHLENNSPHLLVERKEESEELGGYFVVNGNEKIIRLLQVnkrnfpmainrpsfqnrgvnytpygi 225
                     ***....89*******************************************************987778************************* PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      CCE26586.1 226 ivrsvrpdetsqtnvlhylndgnitfrfswrkneylipvlmilkalvetndreifeglvgpmgskatentfltdrievllrtyksygvytksetr 320
                     *********************************************************************************************** PP

                     .................................................................................XHHHHHHHHHHHHH CS
                     .................................................................................xxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 156 .................................................................................laGeLlaslfrvll 169
                                                                                                      l+G L+a++++++l
      CCE26586.1 321 aylgekfrvvlgvsetmsdydvgteflrrivlvhlgnvnvtdeqdddkfrmllfmarklyalaagecavdnpdalqnqeilLGGFLYAQILKERL 415
                     *********************************************************************************************** PP

                     HHHHH.HHHHHHHHHH CS
                     xxxxx.xxxxxxxxxx RF
  RNA_pol_Rpb2_1 170 kkler.dvkerlqksl 184
                     +++ +  v+++++  l
      CCE26586.1 416 DEFLSvGVRSSIRDLL 431
                     *987636777775444 PP

>> RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.6   1.4e+04      29      45 ..     210     226 ..     205     229 .. 0.86
   2 !   98.5   0.0   7.1e-32   1.8e-28       2      68 .]     490     554 ..     489     554 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.6
  RNA_pol_Rpb2_3  29 rkttevRdlhpshwGri 45 
                     r +++ R ++++ +G i
      CCE26586.1 210 RPSFQNRGVNYTPYGII 226
                     678999********987 PP

  == domain 2  score: 98.5 bits;  conditional E-value: 7.1e-32
  RNA_pol_Rpb2_3   2 vldrlnplselshlrrvsslrgglskerkttevRdlhpshwGriCpveTPEGencGlvksLallarv 68 
                     v+++ln+l+++sh+r v+  rg+++++ ktt+vR+l p++wG++Cpv+TP+G++cGl+++La+ +++
      CCE26586.1 490 VAEKLNFLRFISHFRMVH--RGAFFAQLKTTAVRKLLPESWGFMCPVHTPDGSPCGLLNHLAHKCKI 554
                     89****************..*********************************************98 PP

>> RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   6.3e-29   1.6e-25       2     189 ..     202     400 ..     201     401 .. 0.84

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 6.3e-29
                     TSCEEEEE-SSSSSE..........SSSCCEECCCEEEEECCCCSTSCEEEEECTTSSSEEEHHHHHHHTT--STTHHHHHHTS.......SSTT CS
  RNA_pol_Rpb2_2   2 sngiyvekekdknki..........satvtsslisqrgsvlklekdgktliwtriskkrkipivivlkAlglvsdreIlericy.......dsed 79 
                     +n +++  +++ +++          +++v+ +++sq++++++l+++  t++++++++++ ip++++lkAl  ++dreI+e++++       +++ 
      CCE26586.1 202 RNFPMAINRPSFQNRgvnytpygiiVRSVRPDETSQTNVLHYLNDGNITFRFSWRKNEYLIPVLMILKALVETNDREIFEGLVGpmgskatENTF 296
                     6888888888888888999999999**********************************************************999998753333 PP

                     HHHHHHHHHHHHHHCTSSSCHHHHHHHHH...CSSTTSSSCCCCCHHHHHHHCHHHHHHHTTTTSSTTTTTSSSTCHH...HHHHHHHHHHHHHH CS
  RNA_pol_Rpb2_2  80 sqlleelleeleekeeiqtqeealdyigk...vvalrrgeearlqsareilqkrydlgeigreklnkhlglseslenkr.lkaqdilymidrLls 170
                       +  e+l ++ +   ++t+ e   y+g+   vv   ++  ++  ++ e+l          r +l+ hlg  +  + +   k++++l+m+++L+ 
      CCE26586.1 297 LTDRIEVLLRTYKSYGVYTKSETRAYLGEkfrVVLGVSETMSDYDVGTEFL---------RRIVLV-HLGNVNVTDEQDdDKFRMLLFMARKLYA 381
                     344567889999999**************5544444444455566666666.........699999.99865555555569************** PP

                     HHTTSSSS--TTSGGGEEE CS
  RNA_pol_Rpb2_2 171 lklgrrevDDiDhlgnkRv 189
                     l++g++ vD+ D l+n+++
      CCE26586.1 382 LAAGECAVDNPDALQNQEI 400
                     *****************98 PP

>> RNA_pol_Rpa2_4  RNA polymerase I, Rpa2 specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   3.5e-28   8.9e-25       1      58 []     594     651 ..     594     651 .. 0.99

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 3.5e-28
  RNA_pol_Rpa2_4   1 iGyvspkeakavaktLRrlKvegekkvpltlEIglvppskggqYpGLYlftspaRmmR 58 
                     iG+++pke  ++a+ LR++Kveg+++vpl+lEIg+vpps+gg+YpG+Y+ ++paRm+R
      CCE26586.1 594 IGWCTPKESLRIADCLRYWKVEGTHGVPLQLEIGYVPPSRGGSYPGVYITSTPARMVR 651
                     8********************************************************9 PP

>> RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   1.7e-18   4.3e-15       1      85 [.    1079    1209 ..    1079    1211 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1.7e-18
                      BBEEEEHHHHHHHHHHTBHHHHHHHHTTTTTEEEEEEESSSSSCCCEE............................................. CS
  RNA_pol_Rpb2_7    1 GGlrfGEMErdaliayGaaalLkerltikSDavevdvcgrckllaaan............................................. 48  
                      GG+r+GEMErdal a+G+a lL++rl+  SD +++++c+rc+ + +++                                             
      CCE26586.1 1079 GGIRVGEMERDALLAHGTAFLLQDRLLNCSDYTKAWICRRCGSFLSVQptvtpfapgkkrsppsmvrcrncatrldeteaidltevqgeiwed 1171
                      9******************************************999999999**************999999999999999999999999998 PP

                      .EBTTTTCSSSEEEEEEEHHHHHHHHHHHHTTBEEEEE CS
  RNA_pol_Rpb2_7   49 .eCkivkseekiekveipeafklLlqeLqslgialkll 85  
                       + +   + +++++v +p a k L  eL ++g++lk +
      CCE26586.1 1172 gQGNCWVGGDQTTQVVVPGALKYLDVELAAMGVKLKYK 1209
                      85555555666667778999999999999999988765 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.1   0.00012      0.32      12      42 ..    1113    1157 ..    1106    1159 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
         DZR   12 arfCseCgtklkavaa..............edrCpsCgekvdpea 42  
                  a  C +Cg+ l+ +++              + rC +C + +d+++
  CCE26586.1 1113 AWICRRCGSFLSVQPTvtpfapgkkrsppsMVRCRNCATRLDETE 1157
                  668********98888***********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.42
# Mc/sec: 8714.39
//
Query:       CCE26587.1  [L=859]
Description: uncharacterized protein CPUR_00055 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-62  210.1   4.8    3.2e-62  210.1   4.8    2.7  3  ThrE      Putative threonine/serine exporter
    9.4e-10   38.7  33.6    1.9e-09   37.7  15.0    2.6  2  ThrE_2    Threonine/Serine exporter, ThrE


Domain annotation for each model (and alignments):
>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.1   4.8   3.5e-66   3.2e-62       2     240 ..     426     668 ..     425     669 .. 0.96
   2 !   11.6   8.5   1.5e-05      0.13     121     199 ..     701     779 ..     691     793 .. 0.89
   3 ?   -2.0   0.6      0.21   1.9e+03     155     178 ..     817     840 ..     802     846 .. 0.68

  Alignments for each domain:
  == domain 1  score: 210.1 bits;  conditional E-value: 3.5e-66
        ThrE   2 lilrlGeiLlesGaetyrvedtmkriaralgleevevfvtptsiivsvdeeeesittvrrv.rsrgvnleklsevnelsreiaageisleeaeerLdeI 99 
                 +i++l+++L+ +Ga+t+r+e++++++ar+l++ + +++++p ++ vs+d++++++t+vr v +++g++l+kl++v+++++e++++ i+++e  + L+++
  CCE26587.1 426 YIIKLCRALMLYGAPTHRLEEYLTMTARVLEI-DGQFLYLPGCMLVSFDDRSTHTTEVRIVrTTQGIDLGKLKDVHHIYKEVMHDVIGVDEGIQLLEDL 523
                 689*****************************.9**************866777777****99************************************ PP

        ThrE 100 erskpryprwlvvlaaglaaaafallf.ggdwidflvaflagllggllrlll.akrglnsfvleavaaflasllallavslglgln..pdaiiigsill 194
                 ++s+++++ w++vl++gl +a+ a+l   +++id+++af  g+l+gll+l++ +k++++s+v+e++a +++s+la++++s+  g+   ++a+++++i++
  CCE26587.1 524 MTSRNKFRVWVRVLVFGLTSAMCAPLSfSARVIDLPIAFCFGCLVGLLQLVVaPKSNMYSNVFEVTATIIVSFLARAFGSIRGGDLfcFSALAQSGIVM 622
                 **************************88************************99**************************864444557********** PP

        ThrE 195 LvPGlpltnavrDllsgdlvsGlaRlveailialaiafGivlalsl 240
                 L+PG++++++ ++l+s+ +v G++R+v+ai+++l ++fGi+++ +l
  CCE26587.1 623 LLPGYSVLCSALELQSRAIVPGSIRIVYAIIYSLLLGFGITVGSAL 668
                 ******************************************9887 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.5e-05
        ThrE 121 afallfggdwidflvaflagllggllrlll.akrglnsfvleavaaflasllallavslglgln.pdaiiigsillLvPGl 199
                 ++a+l +++w++++++++++++g +++l+   ++   + +++++aa+ +++la l  +l   +  ++a +i +i   vPG 
  CCE26587.1 701 CIAVLYQAKWQQMPAMVIIAFTGHVVSLFStLRFVASPQIANMLAALSVGILANLYSRLR--HGvAAATLIPAIFAQVPGG 779
                 899*************************998899999****************9999963..442699***********84 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.21
        ThrE 155 lnsfvleavaaflasllallavsl 178
                 ln +v++++a+++  +++++++ +
  CCE26587.1 817 LNAVVFNVAASMIQIAIGIAVGLF 840
                 566667777777766666666554 PP

>> ThrE_2  Threonine/Serine exporter, ThrE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1  10.6    0.0012        11       9     127 ..     544     666 ..     537     668 .. 0.85
   2 !   37.7  15.0   2.2e-13   1.9e-09       2     128 ..     692     844 ..     691     845 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0012
      ThrE_2   9 algfavifnvpkrallvagllGavgwlvylllme.lgvsialasflaalaigllsellArriktPvtvflipg...llplvPGlaaYktvlslvqgnle 103
                 a++  + f+++  +l++a  +G++  l+ l++    ++  ++  ++a++++++l++ ++ +     ++f+  +   ++ l PG ++  ++l+l ++ + 
  CCE26587.1 544 AMCAPLSFSARVIDLPIAFCFGCLVGLLQLVVAPkSNMYSNVFEVTATIIVSFLARAFGSIRGGDLFCFSALAqsgIVMLLPGYSVLCSALELQSRAIV 642
                 56666667777778899999999888888777766999999************************99998754344*********************99 PP

      ThrE_2 104 eavengiealliagalavGlvlvs 127
                      ++ a++  + l +G+++ s
  CCE26587.1 643 PGSIRIVYAIIYSLLLGFGITVGS 666
                 999999999999999999999865 PP

  == domain 2  score: 37.7 bits;  conditional E-value: 2.2e-13
      ThrE_2   2 vilafiaalgfavifnvpkrallvagllGavgwlvylllme.lgvsialasflaalaigllsellArriktPvtvflipgllplvPGlaaYktvlslv. 98 
                 +i++  + ++ av+ ++++++++ +++++  g++v l+ +  + +s  +a++laal++g+l++l++r+ +  +   lip+++  vPG+ a +  l +  
  CCE26587.1 692 FIFVPPFIVCIAVLYQAKWQQMPAMVIIAFTGHVVSLFSTLrFVASPQIANMLAALSVGILANLYSRLRHGVAAATLIPAIFAQVPGGLASTGGLLSGl 790
                 577778899****************************9998799******************************************9888764333322 PP

      ThrE_2  99 ..qgn.......................leeavengiealliagalavGlvlvsl 128
                     n                        + +++   ++++ia+++avGl+++ +
  CCE26587.1 791 stA-NqltnsssvvngtsgvqfnqgeplNAVVFNVAASMIQIAIGIAVGLFMSAI 844
                 330.13444455666666677777889667778888999************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6073.63
//
Query:       CCE26588.1  [L=183]
Description: related to ADP-ribosylation factor 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-39  134.0   0.0    4.7e-39  133.6   0.0    1.0  1  Arf           ADP-ribosylation factor family
    1.9e-15   56.9   0.0    2.3e-15   56.6   0.0    1.1  1  Ras           Ras family
    2.9e-13   50.1   0.0    4.1e-13   49.6   0.0    1.2  1  Roc           Ras of Complex, Roc, domain of DAPkinase
    6.7e-06   26.2   0.0    9.3e-06   25.7   0.0    1.2  1  MMR_HSR1      50S ribosome-binding GTPase
    1.4e-05   24.6   0.0    1.6e-05   24.4   0.0    1.1  1  SRPRB         Signal recognition particle receptor beta subun
    7.3e-05   22.1   0.1    0.00065   19.0   0.0    2.1  2  G-alpha       G-protein alpha subunit
    7.3e-05   22.2   0.0    0.00014   21.3   0.0    1.4  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
  ------ inclusion threshold ------
      0.037   14.1   0.0      0.094   12.8   0.0    1.6  2  Dynamin_N     Dynamin family
      0.061   12.9   0.1       0.22   11.0   0.0    1.8  2  FeoB_N        Ferrous iron transport protein B
       0.12   12.4   0.0       0.18   11.8   0.0    1.3  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   2.6e-42   4.7e-39      12     172 ..      18     178 ..       7     180 .. 0.95

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 2.6e-42
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCT CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt.tvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalle 109
                   e+ + l+GL naGKt +l  l  +e++   +PT+g n++ +++ ++++++wD+GGq + R +W++Y + ++a++f+vD ad + +  akeeL++l++
  CCE26588.1  18 ASEMEVTLVGLQNAGKTSVLRALGGGEFTLdSIPTVGCNMKWVRHGQVSIKCWDIGGQPRFRIMWERYCRGVNAIVFIVDIADPDLVPLAKEELHSLMS 116
                 789***********************987549******************************************************************* PP

                 SGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHH CS
         Arf 110 eeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewls 172
                  ++l+ ++llvl+NK Dlp  ls +el ++l+l++++  r+++  + sa + ++l+  ++ l+
  CCE26588.1 117 YQNLAGIPLLVLGNKSDLPRKLSVDELIDELDLNQIQ-GREVCCYGISAKEETNLDAVVQFLM 178
                 *************************************.9***********9999998888776 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   1.3e-18   2.3e-15       2     157 ..      23     178 ..      22     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 1.3e-18
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrv 100
                 + lvG ++ GKts+l     ++F+ ++++T+g++ +     v++ +v+++ wD  Gq +f+ + e y r++++i+ + di + +    +k+ ++ + ++
  CCE26588.1  23 VTLVGLQNAGKTSVLRALGGGEFTLDSIPTVGCNMKW----VRHGQVSIKCWDIGGQPRFRIMWERYCRGVNAIVFIVDIADPDLVPLAKEELHSLMSY 117
                 579****************************988764....67889********************************************999999998 PP

                 ST.TTSEEEEEEETTTGGG....G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHH CS
         Ras 101 ae.envpivLvGnKvDlee....kravsteegeelakelglkfletSAktnenveeafeell 157
                  +   +p++++GnK+Dl +    ++ +++ + +++    ++  + +SAk+++n++ +++ l+
  CCE26588.1 118 QNlAGIPLLVLGNKSDLPRklsvDELIDELDLNQIQ-GREVCCYGISAKEETNLDAVVQFLM 178
                 88899*************944434444444444443.33466779*********99988766 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   2.3e-16   4.1e-13       2     119 ..      23     133 ..      22     134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 2.3e-16
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHH...CHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrsse...nlke 97 
                 v lvG +++GKts l+ +  ++f+ ++ +t+g++++   v   ++        +v++++WD++Gq rfr + + y+r+ +++++++d  + +    +ke
  CCE26588.1  23 VTLVGLQNAGKTSVLRALGGGEFTLDSIPTVGCNMKW--V---RH-------GQVSIKCWDIGGQPRFRIMWERYCRGVNAIVFIVDIADPDlvpLAKE 109
                 789*******************************943..2...22.......3689*******************************766541114467 PP

                 HHHHHHHHCS..SS-EEEEEE-TT CS
         Roc  98 Wlkelkkvag..kspvilvgnkiD 119
                  l++l ++++   +p++++gnk D
  CCE26588.1 110 ELHSLMSYQNlaGIPLLVLGNKSD 133
                 77777777663256999*****99 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   5.2e-09   9.3e-06       1     113 [.      22     130 ..      22     131 .. 0.69

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 5.2e-09
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT......TTCSHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdas......eeklkp 92 
                 ev +vG  N+GK+++++al g +    ++p +  ++++ r    + +i+ +D+ G      + + + ++++   + +++i+++vd++            
  CCE26588.1  22 EVTLVGLQNAGKTSVLRALGGGEFTLDSIPTVGCNMKWVRHG--QVSIKCWDIGG-QP---RFRIMWERYC---RgVNAIVFIVDIAdpdlvpL----- 106
                 689***************************988888888776..799********.43...1234444454...44789******995433221..... PP

                 HHHHHHHHHHH...TTSEEEEEEE CS
    MMR_HSR1  93 ldeeleellee...akkplilvln 113
                  +eel++l++    a++pl+++ n
  CCE26588.1 107 AKEELHSLMSYqnlAGIPLLVLGN 130
                 233333333223336677666655 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   8.8e-09   1.6e-05       4     124 ..      21     134 ..      18     175 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 8.8e-09
                 -EEEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHHH CS
       SRPRB   4 pavllvGlsdsGKTslftrLttdsvkktvtSqessaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyei 102
                   v lvGl+++GKTs++  L  ++++   +    +   k   + + +++  D+ G+ ++r    e+  + + + ++vf+vD  +dp  v    E l ++
  CCE26588.1  21 MEVTLVGLQNAGKTSVLRALGGGEFTLDSIPTVGCN-MKWVRHGQVSIKCWDIGGQPRFRIM-WER--YCRGVNAIVFIVDI-ADPDLVPLAKEELHSL 114
                 5789*****************999866555554444.455589999**************85.555..7999*********6.5888888888999999 PP

                 HHHHHHHTT---EEEEEE-TTS CS
       SRPRB 103 lliteklkdavdiliACnKqel 124
                 ++ +     ++++l+  nK++l
  CCE26588.1 115 MSYQN--LAGIPLLVLGNKSDL 134
                 98877..679999999999997 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.11     2e+02      22      42 ..      19      39 ..      14      42 .. 0.88
   2 !   19.0   0.0   3.6e-07   0.00065     186     241 ..      50     104 ..      44     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.11
                .EEEEEEEESTTSSHHHHHHH CS
     G-alpha 22 revkllllGqseSGKsTilkq 42
                +e+ + l+G +  GK+++l+ 
  CCE26588.1 19 SEMEVTLVGLQNAGKTSVLRA 39
                578999************996 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 3.6e-07
                 ----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B CS
     G-alpha 186 lktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqv 241
                 ++tvG++   ++ + +++++ +d+gGq   r  W+ +  +v+ai+F+v +++ d v
  CCE26588.1  50 IPTVGCNMKWVRHG-QVSIKCWDIGGQPRFRIMWERYCRGVNAIVFIVDIADPDLV 104
                 56777777777777.99*********************************987765 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     8e-08   0.00014       2     129 ..      23     140 ..      22     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8e-08
   Gtr1_RagA   2 vLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre.leedletlk 99 
                 v L+G +++GKts+ + +       d      t+  + + vr +g++ ++ wD+gGq +f         e+  r v+++++++D+ + + ++ + e+l+
  CCE26588.1  23 VTLVGLQNAGKTSVLRALGGGEFTLDS---IPTVGCNMKWVR-HGQVSIKCWDIGGQPRFRIM-----WERYCRGVNAIVFIVDIADPDlVPLAKEELH 112
                 6799********998888776666555...479999999996.89************998765.....58999*************8876777888888 PP

   Gtr1_RagA 100 eilealrqyspeakvfvlihKmDliqeder 129
                 ++++  +q+   + + vl +K Dl ++   
  CCE26588.1 113 SLMS--YQNLAGIPLLVLGNKSDLPRKLSV 140
                 8776..467777888888888888665555 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.2e-05     0.094       1      25 [.      23      47 ..      23      69 .. 0.84
   2 ?   -1.8   0.0       1.6   2.8e+03     121     153 ..      81     114 ..      73     129 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.2e-05
                EEEEEBTTTTHHHHHHHHHTS--S- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilp 25
                +++vG q++GK+Svl aL g ++  
  CCE26588.1 23 VTLVGLQNAGKTSVLRALGGGEFTL 47
                689***************9999754 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.6
                 HHHHHHSTTEEEEEEEE.TTS-CCC-CHHHHHHH CS
   Dynamin_N 121 lvkeyikkadiilavts.anhdlsnsealflare 153
                 + ++y++  ++i+++++ a+ dl    +++l+++
  CCE26588.1  81 MWERYCRGVNAIVFIVDiADPDLVPLAKEELHSL 114
                 6678886666666666514446665555555555 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.22       2      38 ..      22      58 ..      21      78 .. 0.76
   2 ?   -0.4   0.0       0.4   7.2e+02     106     153 ..     123     174 ..      92     176 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEE CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekk 38
                +v+lvG +n+Gkt+++ al g + +    p v  + k
  CCE26588.1 22 EVTLVGLQNAGKTSVLRALGGGEFTLDSIPTVGCNMK 58
                699****************998887777776666555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.4
                 SSEEEEEETHHHHHHTTEE..E-HHHHHHHHTS-EE..EEBTTTTBTHHHHH CS
      FeoB_N 106 vpvvlalnmideaekkgie..idlkkLsekLgvpvv..ktsakkkegieell 153
                 +p+++  n++d  +k  ++  id+  L+++ g +v    +sak+++++++++
  CCE26588.1 123 IPLLVLGNKSDLPRKLSVDelIDELDLNQIQGREVCcyGISAKEETNLDAVV 174
                 5566666666666665543337777777777755541167888888887765 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0001      0.18      51      98 ..     118     175 ..      86     180 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
  MMR_HSR1_Xtn  51 gnrvYipclyvlNKiDlisleeldelare........pnsvv..iSaekelnldeLke 98 
                   +n   ip l++ NK Dl ++ ++del  e        +++++  iSa++e+nld++++
    CCE26588.1 118 QNLAGIPLLVLGNKSDLPRKLSVDELIDEldlnqiqgREVCCygISAKEETNLDAVVQ 175
                   56677999*********666666665554455555553333356**********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1415.50
//
Query:       CCE26589.1  [L=368]
Description: probable threonine aldolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-69  234.4   0.0    2.2e-69  234.0   0.0    1.1  1  Beta_elim_lyase  Beta-eliminating lyase
    7.5e-05   21.4   0.0    0.00012   20.7   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    0.00019   20.7   0.0    0.00025   20.3   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
    0.00023   20.2   0.1    0.00033   19.7   0.1    1.1  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.026   13.8   0.3      0.046   13.0   0.3    1.6  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.0   0.0   6.1e-73   2.2e-69       5     286 ..      27     309 ..      26     315 .. 0.97

  Alignments for each domain:
  == domain 1  score: 234.0 bits;  conditional E-value: 6.1e-73
                      GGG----HHHHHHHHCS----CCCT--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH-.-TTEEEEEETT-HHHHSSTTHHHHCC--E CS
  Beta_elim_lyase   5 DsvtkgteamsdaqaaamlGdesYgedktvnrLedavaelfgkeaalfvpqGtaAnsillkill.qrgeevivtepahihfdetgaiaelagvk 97 
                      D vt +t++m +a+ +++l d++++ed+t+++Le++va+l+gkea+lfv++Gt++n+++l+ ll q+ ++v+++++ahi+ +e+g++++l g++
       CCE26589.1  27 DVVTAPTPSMLAAMQTCTLLDDVFEEDQTTKNLEAHVAALAGKEAGLFVVSGTMGNQLALRSLLtQPPHAVLCDHRAHIIHYEAGGVSTLTGAT 120
                      889*********************************************************77766***************************** PP

                      EEEE-EBTTTBE-HHHHHHHS--S-T.TS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSS CS
  Beta_elim_lyase  98 lrdlknkeaGkmdlekleaaikevga.heekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvD 190
                      + ++  ++  +++le++++++    + h+ ++++isl++T n   G+v++l+e+++++++a+++ i++h+DgAR+++a++s + +++e+++++D
       CCE26589.1 121 VSPVVPNNGIYLTLEDVQEHVVLSTDvHACPTRVISLENTLN---GTVMPLDEVKRISEFAREHSIKMHCDGARLWEAVASGAGTLSEYCAHFD 211
                      ********89*********88887788***************...************************************************* PP

                      EEEEESSSTT--SS-EEEEE-HH....HHHHHHHHHHHHT---SSTHHHHH..HHHHHHHHS........STTHHHHHHHHHHHHHHHHHCT-- CS
  Beta_elim_lyase 191 svtmslkKdllanvGgvlafrddeledylaerveqrkylggglrqagvlaaleagiraleeg........laslerdhktaeqlaeklelvrla 276
                      +v+++l+K+l+a+vG+vl++ +      l + +++rk +ggg+rq g++ a  +g +a++e         + +l+ +h++a++  +    + + 
       CCE26589.1 212 TVSLCLSKGLGAPVGSVLVGPRT----TLTHSRWVRKSIGGGMRQPGFITA--CGRVAVDETfgrkpdgsDGLLKASHDMAKKVEALWTGMGGK 299
                      ***********************....************************..*******9999999999999********************* PP

                      EEECCGTTCC CS
  Beta_elim_lyase 277 iprrvytqeh 286
                      + ++v+t++ 
       CCE26589.1 300 VLHPVHTNMC 309
                      *****99875 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.4e-08   0.00012      52     174 ..      54     189 ..      51     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.4e-08
                      HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEE.........EEEESTSS..HH....HHHHHHHTHHHTTCEEEEESTTSHHHH CS
  Cys_Met_Meta_PP  52 ptrsvleeriaaLeggeaalavssGmaAiaaailallkaGde.........ivvsddlY..gg....tqrllkkvlkklgievkfvdtsdleel 130
                       t+++le+++aaL g ea+l v sG+   ++a+++ll++  +         i+     Y  gg    t + ++ v+++ gi  +  d+++   l
       CCE26589.1  54 QTTKNLEAHVAALAGKEAGLFVVSGTMGNQLALRSLLTQPPHavlcdhrahII----HYeaGGvstlTGATVSPVVPNNGIYLTLEDVQEHVVL 143
                      599************************************99843333333222....232222222277889999******************* PP

                      HHHCCT.TEEEEEEESS-TTTT----.HHHHHHHHHHTT-EEEEEG CS
  Cys_Met_Meta_PP 131 ekaike.ntklvylEtptnpllkvvD.iekiaklakkagvlvvvDn 174
                       + ++   t+++ lE   n ++  +D +++i+++a+++++ +  D 
       CCE26589.1 144 STDVHAcPTRVISLENTLNGTVMPLDeVKRISEFAREHSIKMHCDG 189
                      99999889*******8888776655549***********9998885 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     7e-08   0.00025      46     237 ..      56     232 ..      49     346 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7e-08
                    HHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSE.EEEEEBEETTTTEE-HHHHHHHHT CS
  Aminotran_1_2  46 lpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsgge.vvryplyseedfhldlealeealk 140
                     + le  +a ++g        +ea + v sG+  ++ al  ll  +p  ++l +   +  + ++   s+++     p+ + ++  l+le+++e + 
     CCE26589.1  56 TKNLEAHVAALAG--------KEAGLFVVSGTMGNQLALRSLL-TQPPHAVLCDHRAHIIHYEAGGVSTLTgATVSPVVPNNGIYLTLEDVQEHVV 142
                    678999*******........999*******************.79999********999999877776665555556688**********99866 PP

                    THHCTTE..TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEET..TTTCBSSSSHTHHHHGGSTTSTT..EEEEEESSSTTSSGGG-E CS
  Aminotran_1_2 141 eapegnk..ktkvilvesphNPtGtvatleeleklldlakkynlllfvDea..Yagfvfgsldavatranveeepn..llivgslsKafGlaGeRv 230
                      +      +t+vi +e+  N  Gtv++l+e++ + ++a+++ +   +D a   ++ ++g         +++e+ +  + +   lsK +G++    
     CCE26589.1 143 LSTDV-HacPTRVISLENTLN--GTVMPLDEVKRISEFAREHSIKMHCDGArlWEAVASG-------AGTLSEYCAhfDTVSLCLSKGLGAPV--- 225
                    43322.1369*********99..*********************9999977557888888.......78888888877788888899998888... PP

                    EEEEEEH CS
  Aminotran_1_2 231 Gyilgna 237
                    G +l+ +
     CCE26589.1 226 GSVLVGP 232
                    8888744 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   9.3e-08   0.00033      45     178 ..      56     191 ..      44     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 9.3e-08
                  HHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH-.....- CS
  Aminotran_5  45 veearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekll.....n 137
                   ++ +++va+l + e     +f+ ++t +++l+++sl   l +  ++v+ +   h  +  +  ++  tga+v  +  +++  l+l+++++++      
   CCE26589.1  56 TKNLEAHVAALAGKEA---GLFVVSGTMGNQLALRSL---LTQPPHAVLCDHRAHIIHYEAGGVSTLTGATVSPVVPNNGIYLTLEDVQEHVvlstdV 147
                  5566677777776664...799999999*********...89999999998888888889999***************************99554431 PP

                  TTEEEEEEESBETTTTEB--...HHHHHHHHHHTT-EEEEE-TT CS
  Aminotran_5 138 ektklvaithvsnvtGtiqp...veeigklakkkgalvlvDaaq 178
                  + +    i+  ++  Gt+ p   v++i + a+++ + +++D+a 
   CCE26589.1 148 HACPTRVISLENTLNGTVMPldeVKRISEFAREHSIKMHCDGAR 191
                  222233467778888998771114567788************95 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   1.3e-05     0.046      16      66 ..      47      97 ..      34     207 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
                     SS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EE CS
  DegT_DnrJ_EryC1 16 sgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeV 66
                      + + ++++++++E+ +aa  g++  + v sGt +++laLr l  +p   V
       CCE26589.1 47 DDVFEEDQTTKNLEAHVAALAGKEAGLFVVSGTMGNQLALRSLLTQPPHAV 97
                     45677799*********************************9876665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2764.76
//
Query:       CCE26590.1  [L=639]
Description: related to tyrosinase precursor (monophenol monooxygenase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-47  161.8   3.8    4.6e-47  161.2   3.8    1.3  1  Tyrosinase   Common central domain of tyrosinase
    1.7e-32  112.6   0.0    2.7e-32  112.0   0.0    1.3  1  Tyosinase_C  Tyosinase C-terminal domain
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.34   10.8   0.0    1.5  1  NCBP3        Nuclear cap-binding protein subunit 3


Domain annotation for each model (and alignments):
>> Tyrosinase  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   3.8   7.7e-51   4.6e-47       2     220 ..      94     349 ..      93     351 .. 0.83

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 7.7e-51
                 TSHHHHHHCCSSS--SSTSSSS.........S-TSSTTHHHHHHHHHHHHHHHHHHH.................HHHTHCSEEEB--TSS-....-SS- CS
  Tyrosinase   2 ssydqlagiHgipftewkeeee.........caHgnalFltWHRaYlllfEqalrei.................cgyapdvtlPYWDwaadksspldes 74 
                  s++q+agiHg+pft w+++           c+H+++lF+ WHR+Yl+lfEq+l++i                 ++ a+d++lPYWDw+ ++ +   + 
  CCE26590.1  94 LSWYQVAGIHGVPFTAWNGVGPvsgssqsgyCTHNSVLFPMWHRPYLALFEQQLHKIaneialmftnttqrqlyQEAAADFRLPYWDWSLAAPQGETHL 192
                 69***************999889*******************************9999999*****9999866544499************88899999 PP

                 -HHHH-SEEE-TTCCGE-EEEEE-TTT--BESS........SSS-....G-SBTTCTCB-CTS-CGGGGGS-BTCSSHHHHHH.-GGGHHHHH--SHHH CS
  Tyrosinase  75 peslggdgatipeenlsggcvisnplakytlkk........klgp....kakgtlkseenklaanprclkrenaelsaelata.ssleellkksesyts 160
                 p+ + +   +++ +n+   ++i+npl++y++++        +  p    + ++ + +++    + p++ ++ + +l  + ++  ++l+ ++++ +++++
  CCE26590.1 193 PDVFWSPVIQQDGPNGI--QNIKNPLYSYHFNPldhdaliwS--PlnewNETKRAPNTTLSMSNPPSINEEASRALLGKMSEIqQRLYIIFSNYHEFNA 287
                 99999999999999999..9***********98877766440..2442222333333333334444444444555555555445777888888****** PP

                 HHHHHHH--------..HHHHHHHHHHHHHESSSTTSTTCGGGSTHHHHHHHHHHHHHHHHH CS
  Tyrosinase 161 fsntlegkkskeesa..lespHnavHvwvGangdmgdvataafDPiFflHHaniDrlwaiWq 220
                 fsn++++ ++ +++   +e++H+ +H++ G++g+++ v+++afDP+F lHH+++Drl a+Wq
  CCE26590.1 288 FSNKAWAASQGSSQLdsVEAIHDIIHIYGGSKGHLTYVPLSAFDPLFLLHHTMTDRLVAMWQ 349
                 *******9888877799********************************************9 PP

>> Tyosinase_C  Tyosinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.0   4.5e-36   2.7e-32       1     122 []     495     611 ..     495     611 .. 0.95

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 4.5e-36
  Tyosinase_C   1 dwvanvrvekyalggsftihfflGdppedpttwatapnlvGsvavfasaeeegcencqaaskvlvtgqvpLtsaLler..agelesldpeeVepyLkk 96 
                  +wvanv v+ +al+gs+ ihfflG+pp  +t+w++apnlvGsva+f      ++++ ++ s+++++g+vpLtsaL+++  +  +e+l+p++Vep+L+k
   CCE26590.1 495 EWVANVCVNVEALEGSCLIHFFLGKPPVAETEWHQAPNLVGSVAIF------AMDR-MTGSDSKMSGTVPLTSALMKMvaVRGVEDLSPQHVEPFLTK 585
                  8*********************************************......6788.7999****************9643558************** PP

  Tyosinase_C  97 nLkwrvvkadgeevdpeelpsLkvsv 122
                  +L++ v+++++++++p ++++L+vsv
   CCE26590.1 586 HLHFAVQSTNDSRIEPGRVQGLSVSV 611
                  ************************98 PP

>> NCBP3  Nuclear cap-binding protein subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.7e-05      0.34       5      40 ..     565     596 ..     562     601 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.7e-05
       NCBP3   5 alhirGvdnLstedikaYvdeylnyeepfriEWIdD 40 
                  + +rGv++Ls++ ++ +++++l     f ++  +D
  CCE26590.1 565 MVAVRGVEDLSPQHVEPFLTKHLH----FAVQSTND 596
                 588*******************65....44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4691.20
//
Query:       CCE26591.1  [L=567]
Description: related to cyclin like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-38  132.0   3.5    2.2e-24   86.6   0.2    3.8  4  Cyclin       Cyclin
  ------ inclusion threshold ------
        8.3    5.6  26.0         18    4.5  26.0    1.5  1  NOA36        NOA36 protein


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.7     0.076   6.8e+02      11      46 ..      16      49 ..       7     134 .. 0.67
   2 ?   -2.5   0.6      0.65   5.8e+03      23      47 ..     168     193 ..     146     225 .. 0.55
   3 !   54.6   0.4   1.8e-18   1.6e-14       2      99 ..     269     367 ..     268     403 .. 0.84
   4 !   86.6   0.2   2.5e-28   2.2e-24     102     161 .]     477     536 ..     472     536 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.076
                HHHHHHHHH--------------T............ CS
      Cyclin 11 ldrlvanndetatasadsksnlensqkqssshtktt 46
                 d ++   + +   +++++++ ++ q+q   h++ +
  CCE26591.1 16 HDMIASPSSRPSHRQQQQQQQQQQ-QQQHHHHQH-K 49
                555554444444444444444433.333332322.2 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.65
                 -----------T.............. CS
      Cyclin  23 tasadsksnlensqkqss.shtkttf 47 
                  as+++++n  + q++s  s++  +f
  CCE26591.1 168 AASHHASDNVGRPQQRSPpSSQSQSF 193
                 33444444444433333233333333 PP

  == domain 3  score: 54.6 bits;  conditional E-value: 1.8e-18
                 HHHHHHHHHHHHHHHHHH--------------T......................T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H CS
      Cyclin   2 kliqqlsllldrlvanndetatasadsksnlens.qkqssshtkttfaqtpkessFatkavpaisigsylsrlqkfgesaplvllgtliYldrivkrcv 99 
                 ++i+++++ll +++a+nd + +a + + ++ ++  q   s++ +    ++  +++F++k+vpai i sylsr++k+++++  v+l++l+Y+dr+++r  
  CCE26591.1 269 DVIKMVAALLTKITATNDLQHDAMQRNVAHQQQAnQPNDSESGHSISPLSHSVLAFHGKNVPAITILSYLSRVHKYCPTTYEVFLSLLVYFDRMTERVN 367
                 5799*************998888776655544430344445555666788899*****************************************99654 PP

  == domain 4  score: 86.6 bits;  conditional E-value: 2.5e-28
                 T---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT-- CS
      Cyclin 102 alvvtsanihRllivallvatKflvDlsysnekfakvggislkELnkLEidFlflvdFdl 161
                  +vv+s+nihRl+i +++ a+Kf++D++y+n+++akvgg++l+ELn+LEi+Fl+l+dF+l
  CCE26591.1 477 FFVVDSFNIHRLIISGVTCASKFFSDVFYTNSRYAKVGGLPLAELNHLEIQFLVLNDFRL 536
                 689*******************************************************86 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  26.0     0.002        18     230     299 ..     376     444 ..     359     452 .. 0.38

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.002
       NOA36 230 trslkfgrqkqadgsddddddeedsdydaylkalasgddeddegdedddddddeedddeeeddedeeeee 299
                 +rs +   q+q+ + d  + +++++   a+ +  + +d  dd++d+d+dddd+++ddd +++d+d+e+ee
  CCE26591.1 376 VRSNQLASQSQSVSPDASQ-KDTAMREPAHESDETDSDLADDDNDNDNDDDDKDNDDDANDNDDDDEDEE 444
                 4555555555443333333.22222222222222222333333333333333333322222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1975  (0.110157); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.48
# Mc/sec: 3553.16
//
Query:       CCE26592.1  [L=229]
Description: probable PRE3-20S proteasome subunit (beta1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-47  159.0   0.2    1.1e-46  158.8   0.2    1.0  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8   0.2     6e-51   1.1e-46       1     189 [.      26     207 ..      26     208 .. 0.96

  Alignments for each domain:
  == domain 1  score: 158.8 bits;  conditional E-value: 6e-51
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 v+ Gt+++++++kdgv+l+ad+r+t+g++++++ t +K+ +++d+i+++ +G+aaD++++++++++++ l+ +r g+p+ ++     +aa + +++++s
  CCE26592.1  26 VNLGTSIMAVTFKDGVILGADSRTTTGAYIANRVT-DKLTRVHDTIWCCRSGSAADTQAVADIVQYQLGLFAMRSGKPPMTQ-----TAASIFQEICYS 118
                 689***************************88886.**********************************************.....9*********** PP

                 TTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEES.TTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEE CS
  Proteasome 100 grrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiG.sgseaaktalekeykedltleeavelavkalkealerdklsgknievav 189
                 ++  + ++l+iag+de+ g ++y+i   Gs++++  a aiG sgs+++++++++++ke +++ eave+++ al+ea++ d +sg+ i+++v
  CCE26592.1 119 NKDKLSAGLIIAGWDERFGGQVYSIPLGGSLHKQ--AYAIGgSGSTYIYGYCDANWKEGMEEAEAVEFVKGALREAIKWDGSSGGVIRMVV 207
                 *********************************8..566666*********************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1705.24
//
Query:       CCE26593.1  [L=224]
Description: related to Erv1p and rat ALR protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-28   99.0   0.2    2.8e-28   98.3   0.2    1.4  1  Evr1_Alr  Erv1 / Alr family
  ------ inclusion threshold ------
       0.15   12.3   0.1        0.3   11.3   0.1    1.6  1  APOBEC1   APOBEC1


Domain annotation for each model (and alignments):
>> Evr1_Alr  Erv1 / Alr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.2   3.1e-32   2.8e-28       1      92 [.      93     179 ..      93     186 .. 0.94

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 3.1e-32
                 HHHHHHHHHHHHCSHSS..HHHHHHH-CHHHHHHHHHHHSSCHHHHHHHHHHHHHCH.CCCGSSHHHHHHHHHHHHHHHHHHTT...T-HHC CS
    Evr1_Alr   1 cslWtllHtlaaevpekpteeqqkelavlkaflkliakfypCeeCaehfekvlaenppekevesrdelvlWlweaHNeVnkrlakeefdcse 92 
                 +++W++lHt+ a++p+kp+++++k+l   ++f++l+ ++ypC +Ca+hf+++l+++pp+  +++r++++ Wl+++HN Vnkrl+k++fdc++
  CCE26593.1  93 RATWKFLHTMVAKFPDKPSDSDRKTL---ESFFHLFGRLYPCGDCARHFREMLKKYPPQ--TSTRNAAAGWLCSMHNMVNKRLKKPQFDCTK 179
                 79**************9***999999...**********************99999988..9****************************95 PP

>> APOBEC1  APOBEC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.4e-05       0.3      42      72 ..     123     153 ..      93     179 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.4e-05
     APOBEC1  42 twflstspcgkcskaileflsqhpnvtlviy 72 
                   f    pcg+c+++ +e+l+++p  t +  
  CCE26593.1 123 HLFGRLYPCGDCARHFREMLKKYPPQTSTRN 153
                 5566678****************98775544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1661.89
//
Query:       CCE26594.1  [L=941]
Description: uncharacterized protein CPUR_00062 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.00u 0.30s 00:00:01.30 Elapsed: 00:00:00.55
# Mc/sec: 5191.92
//
Query:       CCE26595.1  [L=1764]
Description: related to PIF1-DNA helicase involved in mitochondrial DNA repair and telomere length control [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-40  139.1   2.2    3.9e-40  138.1   2.2    1.5  1  Helitron_like_N  Helitron helicase-like domain at N-terminus
      2e-33  116.1   0.0    2.5e-28   99.3   0.0    2.2  2  PIF1             PIF1-like helicase
    2.6e-14   53.4   0.0    1.1e-13   51.3   0.0    2.0  2  AAA_30           AAA domain
    2.6e-07   31.1   0.0    7.2e-07   29.6   0.0    1.8  2  AAA_19           AAA domain
    0.00038   18.5   0.0     0.0017   16.4   0.0    1.8  2  Herpes_Helicase  Helicase
  ------ inclusion threshold ------
      0.061   13.2   0.1       0.16   11.8   0.1    1.7  1  UvrD_C_2         UvrD-like helicase C-terminal domain
      0.092   12.6   0.0       0.25   11.2   0.0    1.7  1  SH3_13           ATP-dependent RecD-like DNA helicase SH3 dom
        2.6    6.7   6.2        4.8    5.8   6.2    1.3  1  SAPS             SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   2.2   1.7e-43   3.9e-40       1     190 []     554     747 ..     554     747 .. 0.89

  Alignments for each domain:
  == domain 1  score: 138.1 bits;  conditional E-value: 1.7e-43
  Helitron_like_N   1 yaaflL.q..gRfaehsrflflafnllqqyvvdayakveeerlsflrknqkelraesltgeeLkealeeetedeelkllgklvilpssvpgspr 91 
                      y++  L +  +Rfa+h ++++++ n+  ++      ++++++++fl+k+q++    ++t+e+Lke+++e+ ++e+++ll++++++ ss+ g+++
       CCE26595.1 554 YVQRTLkFhdRRFAQHDKYRYVVYNMSIRW------QSNKRSSFFLKKDQRK----DITAEKLKEMFHEN-TEEAQSLLNSVTRFTSSILGTRP 636
                      55666654589*******************......************6666....359999*******9.44447****************** PP

  Helitron_like_N  92 ymqekrqdlmaivrelgkPdlFiTltcndk.wpeikeel......rkkkkaqt........aadrpdivarvFhrkleaflkdllkegvfGkvs 170
                      y++ekr++l+a+vr lg+P+lF+Tl+++d  w+++ + +       + +++ +        ++++pdi+a +F+ +++ f+++++  ++  +v+
       CCE26595.1 637 YWREKRNELVAMVRGLGCPALFMTLSAADLhWESLAKLMpdyevwAAGSNE-QkikiasmnLKKNPDIAAFHFMDRFQRFMTEVIIPKF--NVV 727
                      ******************************9******99999996333333.347788888***********************96666..9** PP

  Helitron_like_N 171 ayvytvEfQkRGlpHaHlLl 190
                      +++++vEfQ RG+pH+H+++
       CCE26595.1 728 DFWWRVEFQARGSPHIHMVV 747
                      ******************96 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   1.1e-31   2.5e-28      18     218 ..    1236    1432 ..    1213    1440 .. 0.82
   2 !   14.5   0.1   6.7e-06     0.015     330     363 ..    1508    1541 ..    1495    1542 .. 0.91

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 1.1e-31
                  ..HCTS-EEEEESTTSSCHHHHHHHHHHCHC.TCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-HHHH.HHHTSCCCHHHHHC-SEEEEECGG CS
        PIF1   18 lnekgklfFvtGsgGtgKtflwkallkklrs.egkivlavAssGvAalllegGrtahsrfkiplekdeestc.kikrgsklaellkktsliiwDEap 112 
                  ln  + l++v+G gGtgK+fl +a++ +l++     v+  A +G+Aa+ +  Grt+hs+ ++p++k+e+    +  +  ++++ +++++ ii+DE +
  CCE26595.1 1236 LNPAPILMHVDGAGGTGKSFLIHAVSDVLETaLPGSVVRAAPTGIAANAI-DGRTIHSLLRLPVTKSETLEPlQGDQLVSVQNDMARIEYIILDEKS 1331
                  34567799*********************99445689999**********.9*************9997654499999******************* PP

                  GSBHHHHHHHHHHHHHHCT-...-SCCCC-EEEEE--TTS-----SSSSS---BGC...C...SCHHHH--.EEEE-S-STTTT...........HH CS
        PIF1  113 mverecfealdrtlrdilkekeidkpFGGktvvlgGDfrQilPviekgsraeivaasike...SklWkevk.vlkLtknmRllsesldetekkelke 205 
                  m+  + + ++d  l +i  e+  dkpFGG  v l GDf Q++Pv +k+  ++    + +     k+++ +k  + L++++R++ +        e k 
  CCE26595.1 1332 MIGLRTLYSIDDRLGQIYPEHR-DKPFGGRSVLLLGDFSQLPPVFDKPLYTQGPLEMPTDaygRKMYQCFKqSIFLQQVVRQAGD--------EEKG 1419
                  *******************988.***********************998777544444440115677777778999999999995........6789 PP

                  HHHHHHHHHCT-- CS
        PIF1  206 FskwllkigdGki 218 
                  F + l +++dG+ 
  CCE26595.1 1420 FRDALAAVRDGNP 1432
                  9999999999985 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 6.7e-06
                  -SCEEE-TT-EEEE-S--CTT-SC-TCEEEEEEE CS
        PIF1  330 nhvLkLkvGvpvmllrNldqsaGLcNGtrlivtq 363 
                  ++ L L vG++vml  N+ +++GL+NG+ ++v++
  CCE26595.1 1508 QRNLSLCVGAKVMLTENIWTAKGLVNGAIGTVID 1541
                  6789************************999975 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.7   8.2e+03     126     159 ..     596     629 ..     595     633 .. 0.77
   2 !   51.3   0.0   4.9e-17   1.1e-13      20     176 ..    1242    1434 ..    1230    1445 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.7
      AAA_30 126 rQlasVeaGgvlrdlveaagigtaeLtevvRqke 159
                 +Q + ++a ++ ++  e+++  +  L++v+R+++
  CCE26595.1 596 DQRKDITAEKLKEMFHENTEEAQSLLNSVTRFTS 629
                 6788888888877777767788888999999976 PP

  == domain 2  score: 51.3 bits;  conditional E-value: 4.9e-17
      AAA_30   20 vavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLaeelgieastiakllkrlk.................grarlepgtllivDEag 98  
                  ++ + G+ GtGK++++ a+ +++e+a  g+v+ +Aptg aA+++       ++ti++ll+                     ++++++ + +i DE +
  CCE26595.1 1242 LMHVDGAGGTGKSFLIHAVSDVLETAlPGSVVRAAPTGIAANAID------GRTIHSLLRL-PvtksetleplqgdqlvsVQNDMARIEYIILDEKS 1331
                  67789*********************99*************9988......5566666633.23666666666677779966788888********* PP

      AAA_30   99 mvdtkqlaallkaaeka..........gakvilvGDerQlasVeaGgvlrdlvea...........agi..gtaeLtevvRq...keseeraaalal 169 
                  m++ ++l ++ +++ +           g +v+l+GD  Ql++V    ++++   +           +    +++ L++vvRq   +e+ +r+a  a+
  CCE26595.1 1332 MIGLRTLYSIDDRLGQIypehrdkpfgGRSVLLLGDFSQLPPVFDKPLYTQGPLEmptdaygrkmyQ-CfkQSIFLQQVVRQagdEEKGFRDALAAV 1427
                  **999997776666553455678899889**************765444443212233346654432.1458999*******76335899******* PP

      AAA_30  170 regdaee 176 
                  r+g++++
  CCE26595.1 1428 RDGNPTR 1434
                  ***9983 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       6.7   1.5e+04      29      68 ..      76     113 ..      75     127 .. 0.75
   2 !   29.6   0.0   3.2e-10   7.2e-07      12     145 ..    1242    1375 ..    1230    1376 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6.7
      AAA_19  29 hivallvelggvkpeeillvaftgrAakelrerlaalgae 68 
                 hi+++ ++++   ++ +  v++  rA++ ++ ++++++++
  CCE26595.1  76 HICSISLQMKA--ADYYHQVTPGVRAVSGIKRSIDEVDKP 113
                 55566666663..477889999999999999998877765 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 3.2e-10
      AAA_19   12 vllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelle...eaeeekklqeeel 105 
                  ++ v +  GtGK+ +++++  +l+ +    p +++ +a+tg Aa+ +  r+         iH+l  l +  +++e+le l+     + ++++ + e+
  CCE26595.1 1242 LMHVDGAGGTGKSFLIHAVSDVLETAL---PGSVVRAAPTGIAANAIDGRT---------IHSL--LRLPVTKSETLEPLQgdqLVSVQNDMARIEY 1324
                  46688999********99999999988...789************999887.........9999..877777777888888887345667786777* PP

      AAA_19  106 livDEfqdvd.elqyrL...lkallgek.kk......lllvGDpdQliyvf 145 
                  +i DE +++   + y++   l ++++e+ +k      +ll+GD  Ql++vf
  CCE26595.1 1325 IILDEKSMIGlRTLYSIddrLGQIYPEHrDKpfggrsVLLLGDFSQLPPVF 1375
                  **********9999998555666665553449*****************99 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.13   2.9e+02      24      95 ..    1208    1276 ..    1202    1284 .. 0.71
   2 !   16.4   0.0   7.7e-07    0.0017     719     778 ..    1618    1676 ..    1602    1690 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.13
  Herpes_Helicase   24 ikeLsrertaeepelewfrseldleeeeeselslPFsaylitGtAGaGkstsiqalaenldClitgatvvAa 95  
                       ++  s+ ++++    ++frs ++  +++ ++   P   + + G+ G+Gks  i a+ ++l+  + g+ v Aa
       CCE26595.1 1208 VNYASQLNREQLAVWHIFRSHCREVAQKLNP--APIL-MHVDGAGGTGKSFLIHAVSDVLETALPGSVVRAA 1276
                       5555666666666677777766544444442..3543.4589******************998888877665 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 7.7e-07
  Herpes_Helicase  719 hlcttvDYgissklamtiaksqGlslekvAicFgnhknlklssvYvalsRatdseflvmd 778 
                       +lct   + ++   a+t+ ksqG  ++k   +  + k       Yva+sR+ + + +++d
       CCE26595.1 1618 QLCTRIQFPLTVAYAITVHKSQGCTVDKAVTDI-SGKDFTPGLTYVAISRVKSLQGIMFD 1676
                       69**************************66665.5669*************998888776 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   7.2e-05      0.16       2      44 ..    1630    1666 ..    1629    1670 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.2e-05
    UvrD_C_2    2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTR 44  
                  aya+t+hk+QG   +  +  d++  ++        l Y+a++R
  CCE26595.1 1630 AYAITVHKSQGCTVDKAVT-DISGKDFT-----PGLTYVAISR 1666
                  7**********99999988.34433333.....3478888888 PP

>> SH3_13  ATP-dependent RecD-like DNA helicase SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.25      25      55 ..    1512    1543 ..    1496    1563 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
      SH3_13   25 vfrvgDkVmqlkNn.ydkgvfNGDiGiikeid 55  
                   + vg kVm ++N  + kg+ NG iG++ +++
  CCE26595.1 1512 SLCVGAKVMLTENIwTAKGLVNGAIGTVIDMS 1543
                  4789*********73567**********9984 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.2    0.0021       4.8     265     332 ..     408     496 ..     368     521 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0021
        SAPS 265 eealedvs...........................deaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdassees 332
                  ea+++++                                  +++s+d +d++++ ++++s++++d+++++d+++s+++++s+++++++ +++e+
  CCE26595.1 408 FEAFKEQIleganvpgsqsiplrpasptiafrrlgR------QPTSADSQDSQDSQDSQDSQDSQDSQDSQDSQDSQDSQDSQDSQDSNPQPSEP 496
                 344444446666666666666666666665553332......22333333333333333333333333333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1105  (0.061632); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.32u 0.33s 00:00:01.65 Elapsed: 00:00:00.53
# Mc/sec: 10063.63
//
Query:       CCE26596.1  [L=557]
Description: related to multidrug transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-39  136.1  50.6    5.1e-39  134.2  45.6    2.6  2  MFS_1     Major Facilitator Superfamily
    5.6e-11   42.0  12.6    5.6e-11   42.0  12.6    2.6  2  Sugar_tr  Sugar (and other) transporter
    1.7e-10   39.9  16.0    2.3e-10   39.6  16.0    1.1  1  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2  45.6   8.5e-43   5.1e-39       1     352 [.      48     458 ..      48     459 .. 0.85
   2 ?   -1.5   0.2      0.16   9.4e+02      40      62 ..     515     537 ..     502     539 .. 0.49

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 8.5e-43
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlg 98 
                 ++l+++l++++ si++++l   ++++l  + + +++++ +y+l+++  +++++r+sd +Grr  l+++++lf+ + +++++ a ++  l+++r lqG+g
  CCE26596.1  48 VCLGLLLAMMDTSIVATSLF-SIGTELK-DIANVNWVALAYTLAYMGCAVVFARISDIIGRRDALVAAYVLFVGFsVACGC-ARTMQQLIAFRTLQGVG 143
                 578999999****9999999.9******.********************************************99444444.466669*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 +++l++++++++ + +p+  r+   ++++ +++++ +lgp+lggll+++++Wr+vf+i+++++++a+ +fll  p +++++   ++  +e         
  CCE26596.1 144 GSGLYALAMIVLPESSPRHLRPHISAMIGFFVAMAGVLGPVLGGLLTEYASWRWVFWINGPIGVVALAVFLLSWPKKEHRPVLHRHSWKEldypgailt 242
                 ******************************************************************888777778888888888888888********* PP

       MFS_1 189 ..................................................kgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqe 236
                                                                   ++++ + ++p++ + l +  ++ + l+  ll +f + +l + +pl   +
  CCE26596.1 243 iaaavlvvfafqnaggssstnnhwssalfivpltlgilswialfawqyavERRFASRFSPIFPIRLFHHAMYsSGLLNTLLLGFPYLLLIYVVPLR-IQ 340
                 ****************99999988888888887776666666666654444444444444222222222223756666666667999999999995.66 PP

       MFS_1 237 vlglsglllaglllallalvgailallagrls.drlgrrrrlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappee 333
                 v g +++llag++l  + + +a++++l+g++  ++      ll++  l+ll++ +l  l+v +  ++ ll+++++G  g+g++++s++ +as+ +pp+ 
  CCE26596.1 341 VVGGKSALLAGIMLLPMLVSVAVGSILSGAVNaRKRVILESLLVGSCLMLLGCGLLTTLSVQELDTAKLLGFIVFGGlGFGLTVSSSTIIASQEVPPRD 439
                 666663688886666666666777999999997888889999********************9999999988888888********************* PP

       MFS_1 334 agtasglfntagslggalg 352
                  ++a+g+   ++ +gg+lg
  CCE26596.1 440 YASAQGILAQLRIFGGSLG 458
                 ********99999999987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.16
       MFS_1  40 lyalgaavaslplGrlsdrfGrr 62 
                 +  l  a+ ++ l++l +r+ rr
  CCE26596.1 515 ATVLSGAAVAFTLAALLQRWRRR 537
                 22333333444444444555444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0  12.6   9.3e-15   5.6e-11      48     191 ..      79     217 ..      45     220 .. 0.89
   2 ?    1.4   8.4     0.019   1.2e+02      44     161 ..     346     466 ..     240     482 .. 0.77

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 9.3e-15
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                 + +++ ++ +  +  ++++  ++d++GR+++l++a vlfv  +v +++a    ++++li+ R l G+g  + ++l+ + + E +p +lR  +  +  ++
  CCE26596.1  79 VNWVALAYTLAYMGCAVVFARISDIIGRRDALVAAYVLFVGFSVACGCAR---TMQQLIAFRTLQGVGGSGLYALAMIVLPESSPRHLRPHISAMIGFF 174
                 56888888888999999*********************************...9********************************************* PP

                 HHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHH.HHGGGS CS
    Sugar_tr 147 itfGilvaaifglglnktsnadgwrillglqlvpallll.illlfl 191
                 +++  +++ ++g  l ++ +   wr+ ++++  + ++ l ++ll +
  CCE26596.1 175 VAMAGVLGPVLGGLLTEYAS---WRWVFWINGPIGVVALaVFLLSW 217
                 ********************...********999975440444555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.019
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHH.HHHHH.HHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHH.TTS-SCCHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRk.kslli.aavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyis.EiApkklRgal 139
                 s++l g+++  +lv  ++Gs+++g +  r      sll+ ++++++ +++l+ ++ ++  +  l+   v+ G+g Gl+   +++ +s E+ p ++++a 
  CCE26596.1 346 SALLAGIMLLPMLVSVAVGSILSGAVNARKRVIlESLLVgSCLMLLGCGLLTTLSVQELDTAKLLGFIVFGGLGFGLTVSSSTIIASqEVPPRDYASAQ 444
                 6778888899999999999999997655443322455552555666668889999988899999999999999999999999988765999999***** PP

                 HHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 140 vslyqlaitfGilvaaifglgl 161
                 + l ql i  G l  a ++++l
  CCE26596.1 445 GILAQLRIFGGSLGIAASTAIL 466
                 ******9999998777766666 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6  16.0   3.8e-14   2.3e-10      61     465 ..      63     466 ..      12     491 .. 0.72

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 3.8e-14
       TRI12  61 qasasalpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgct.atkfntllaamtllgvaagpagasplfvgel 158
                  +s  ++   l+d+ + +  +l  tl  +g av   v+ r++d +grr  ++++++l +vg  v c  a  ++ l+a  tl gv     g   l +  l
  CCE26596.1  63 ATSLFSIGTELKDIANVNWVALAYTLAYMGCAV---VFARISDIIGRRDALVAAYVL-FVGFSVACGcARTMQQLIAFRTLQGVGGS--GLYALAMIVL 155
                 334444556688899888899999999999887...789**************9998.678878775266789999999****9654..4444444444 PP

       TRI12 159 msnktkflgllivsi..pvvvtsg.lspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvrkreelakldwigiilvivgvslf 254
                      + l   i ++    v+++g l+p lg  l+   swrw+f+i   +  +a+ + ++     s+ +   + v +r+    ld+ g il i+ + l+
  CCE26596.1 156 PESSPRHLRPHISAMigFFVAMAGvLGPVLGGLLTEYASWRWVFWINGPIGVVALAVFLL-----SWPKKEHRPVLHRHSWKELDYPGAILTIAAAVLV 249
                 444444554333322113566666379******************986665555444333.....44455567888999999***********999998 PP

       TRI12 255 llgvsw.gg..kpnspwnsakviglissglgslv.vfal.yev...ygkpvrpivppalfkdtrgfvcillissimgamnlslviiypqqvvnifgssl 345
                 ++     gg    n+ w sa  i  ++ g+ s + +fa  y v   +     pi p  lf+ +  +   ll + ++g   l l+ + p ++  + g s 
  CCE26596.1 250 VFAFQNaGGssSTNNHWSSALFIVPLTLGILSWIaLFAWqYAVerrFASRFSPIFPIRLFHHAM-YSSGLLNTLLLGFPYLLLIYVVPLRIQVVGGKSA 347
                 887754144334799******9999999987754267642444333888999********9875.77788899999*****999999998766666543 PP

       TRI12 346 knweetawmsatasfgtgagvvvlgslfhlvrhirwqilvgalwltaflgamssvnrdnknaa..ialsvlsgfvvawaqditmllvqfittdedlgva 442
                      +  m     +    g ++ g++    r i   +lvg+  +    g ++++  ++ ++a  + + v+ g+  + +   + ++        d   a
  CCE26596.1 348 -L--LAGIMLLPMLVSVAVGSILSGAVNARKRVILESLLVGSCLMLLGCGLLTTLSVQELDTAklLGFIVFGGLGFGLTVSSSTIIASQEVPPRDYASA 443
                 .2..34455555566677889999999999999*99****99776666666666655555555115555677877777766665665556667889999 PP

       TRI12 443 favvaaarpfagsiftaafisly 465
                   ++a  r f gs+  aa  ++ 
  CCE26596.1 444 QGILAQLRIFGGSLGIAASTAIL 466
                 99999999999999888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 3716.44
//
Query:       CCE26597.1  [L=221]
Description: related to glutathione S-transferase III [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-10   39.7   0.0    7.7e-10   39.0   0.0    1.4  1  GST_N     Glutathione S-transferase, N-terminal domain
    1.9e-09   37.8   0.0    4.3e-09   36.6   0.0    1.6  2  GST_N_3   Glutathione S-transferase, N-terminal domain
    1.4e-08   34.8   0.0      2e-08   34.3   0.0    1.3  1  GST_C     Glutathione S-transferase, C-terminal domain
    3.4e-07   30.5   0.0      6e-07   29.7   0.0    1.4  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    4.7e-07   29.9   0.1    9.9e-07   28.9   0.0    1.6  2  GST_C_3   Glutathione S-transferase, C-terminal domain
    1.1e-05   25.4   0.1    3.4e-05   23.8   0.0    1.8  2  GST_C_2   Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.024   14.4   0.0    1.4  1  GST_C_6   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0     3e-13   7.7e-10       6      75 ..       5      73 ..       1      74 [. 0.92

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 3e-13
                ESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGC.HHHHHHCTTS-SSEEEETTEEEESHHHHHHHHH CS
       GST_N  6 ysirgsprahrirlllaakgveyevvpldfeageeks.pellklnplgkvPaLedngkkltESraIleYia 75
                +++++++ ++ri ll ++++++y  + +++  +++ + pe++ l+p g +P+ +d++ +l+ES+a +eYi+
  CCE26597.1  5 VHHLEKSQSERITLLCEELNIPYDLKLYKR--APTLApPEYKALHPQGTSPVIQDGDVTLAESGACMEYIV 73
                578888999********************8..666666*******************************96 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.7e-12   4.3e-09      10      72 ..      13      77 ..       5      81 .. 0.88
   2 ?   -3.3   0.0       5.1   1.3e+04      21      38 ..     179     196 ..     165     201 .. 0.60

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.7e-12
                HHHHHHHHHHHT--EEEE---..TTTTHHHHHHH-TT--SSEEETTS-EEESHHHHHHHHHHHH- CS
     GST_N_3 10 arrvrlaLnekglpvevvevt..pgehdeellaknplgkvPvLeddgealtdSlaIidyLeelyp 72
                + r+ l+++e+++p+ +      p+  ++e++a +p+g+ Pv++d++  l +S a ++y+ ++++
  CCE26597.1 13 SERITLLCEELNIPYDLKLYKraPTLAPPEYKALHPQGTSPVIQDGDVTLAESGACMEYIVHKFG 77
                7899**********9876654338888*********************************99997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.1
                 T--EEEE---TTTTHHHH CS
     GST_N_3  21 glpvevvevtpgehdeel 38 
                 g ++ +  v++ ++++++
  CCE26597.1 179 GFDHVLKYVEKISNRPAY 196
                 444445555555566665 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   7.8e-12     2e-08      20      93 .]     122     194 ..      95     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 7.8e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C  20 keelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimarp 93 
                 +  lv+ ++++++  ls l+++l+k+ +l+G++++ AD+ l + l+ ++   +  + ++f ++ +++e+i++rp
  CCE26597.1 122 DHWLVQMSKQRLNQGLSELDKRLAKNEWLAGTQFSAADAMLMFSLTTMRYWTPYSL-TGFDHVLKYVEKISNRP 194
                 555677788899999************************99999999999999998.9***************9 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   2.4e-10     6e-07       5      67 ..      13      72 ..      11      75 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.4e-10
                HHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHH CS
     GST_N_2  5 ahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlryl 67
                + R++++++++++++ ++ +   + +  +++e+++l+p+gt Pv++d +   ++eS + ++y+
  CCE26597.1 13 SERITLLCEELNIPYDLKLY--KRAPTLAPPEYKALHPQGTSPVIQD-GDVTLAESGACMEYI 72
                78******************..67888999****************9.668999*******97 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.6   4.1e+03      44      61 ..      78      96 ..      67     117 .. 0.70
   2 !   28.9   0.0   3.9e-10   9.9e-07      23      91 ..     127     195 ..     101     202 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.6
                GTS.SSSTTS--HHHHHHH CS
     GST_C_3 44 ggg.ylvgdklTyADlalf 61
                +g  ++  + + yAD++++
  CCE26597.1 78 NGRlWVQPSDVEYADFLYW 96
                4444777777779999876 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 3.9e-10
                 HHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH..TCCCC-HHHHHHHHHHHTSHH CS
     GST_C_3  23 efleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea..ealkkfpklkalyervearpk 91 
                 ++ ++rl++ l+ ++k l+  ++++l+g +++ AD +l+  l +++++   +l+ f ++ +++e++++rp+
  CCE26597.1 127 QMSKQRLNQGLSELDKRLA--KNEWLAGTQFSAADAMLMFSLTTMRYWtpYSLTGFDHVLKYVEKISNRPA 195
                 567899*************..999************************8655599***************7 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.94   2.4e+03      35      44 ..      90      99 ..      75     110 .. 0.82
   2 !   23.8   0.0   1.3e-08   3.4e-05       8      67 ..     130     187 ..     112     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.94
                HHHHHHHHHH CS
     GST_C_2 35 laDialapfl 44
                +aD+ +++++
  CCE26597.1 90 YADFLYWWHW 99
                7899999875 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.3e-08
                 HHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHH CS
     GST_C_2   8 leqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdireaypnlraWl 67 
                 +++l + l++l+++La+  +l+G q+++aD++l   l  +r+ +p+     ++ ++ +++
  CCE26597.1 130 KQRLNQGLSELDKRLAKNEWLAGTQFSAADAMLMFSLTTMRYWTPY--SLTGFDHVLKYV 187
                 688999***************************9988888888764..345666666655 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   9.5e-06     0.024       5      53 ..     137     189 ..     133     200 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.5e-06
     GST_C_6   5 leaLselLgdkkyFfGdkPtslDA.lvFGhlaqilytplesp...elrellke 53 
                 l+ L ++L++++++ G + + +DA l+F+ + + ++tp+  +   +  +++++
  CCE26597.1 137 LSELDKRLAKNEWLAGTQFSAADAmLMFSLTTMRYWTPYSLTgfdHVLKYVEK 189
                 67899***********99******558**********9988855544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1601.02
//
Query:       CCE26598.1  [L=325]
Description: related to NADPH2:quinone reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-26   93.2   0.2    2.1e-26   92.4   0.2    1.4  1  ADH_zinc_N     Zinc-binding dehydrogenase
    1.8e-19   71.1   0.1    3.2e-19   70.3   0.1    1.4  1  ADH_zinc_N_2   Zinc-binding dehydrogenase
    2.9e-07   30.3   0.0    5.8e-07   29.4   0.0    1.6  1  ADH_N          Alcohol dehydrogenase GroES-like domain
    4.5e-06   26.5   0.0    8.3e-06   25.7   0.0    1.4  1  ADH_N_2        N-terminal domain of oxidoreductase
  ------ inclusion threshold ------
      0.017   15.6   0.3      0.042   14.4   0.3    1.7  1  Ribosomal_L11  Ribosomal protein L11, RNA binding domain
      0.041   13.3   0.4       0.11   12.0   0.4    1.7  1  adh_short      short chain dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.2     7e-30   2.1e-26       1     124 [.     153     275 ..     153     286 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 7e-30
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.EE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.fd 98 
                 gvGl++vq+++ +Ga+vi+++s+eek+elak  Ga+ +i++ e d+v+++ke+tgg g+d++f+ vG  at++a l++++p+G lv +G  +g  + ++
  CCE26598.1 153 GVGLLLVQMLRSIGAKVIGTASTEEKRELAKTKGAEWTIDSGE-DVVAKVKEITGGHGIDAIFDGVG-MATFDADLEMIAPKGHLVSFGNASGAVPpVN 249
                 9****************************************99.***********************.**********************7777767** PP

                 HHHHHHTT-EEEEE-SSCHHHHHHHH CS
  ADH_zinc_N  99 lrnlllkeksilGsllgslreefkea 124
                 + +l +k+++++  +l+++  e k++
  CCE26598.1 250 ILKLGAKNVKLVRPVLYGYITERKDL 275
                 **********9998888867766655 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.1   1.1e-22   3.2e-19       2     132 ..     186     321 ..     185     322 .. 0.80

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 1.1e-22
                   T-SEEEETTSTTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----....S-EEE-CHHHCTTT-EEEE--GGG...-..-HHHHH CS
  ADH_zinc_N_2   2 GAdevidyrtedfe...aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp...lsaallkpakkrkgrsvkyeflfsmkas.aqadile 91 
                   GA+  id+ ++ ++   + tgg g+D+++d vg +++ +a l++++++G+lvs g+ +    + ++lk+ + ++ + v+ +++ +++++   +   +
    CCE26598.1 186 GAEWTIDSGEDVVAkvkEITGGHGIDAIFDGVGMATF-DADLEMIAPKGHLVSFGNASgavPPVNILKLGA-KNVKLVRPVLYGYITERkDLEAYSQ 280
                   6777788886666689899****************9*.*******777*******7556775555555555.555566666666544444344446* PP

                   HHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEE CS
  ADH_zinc_N_2  92 elaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiV 132
                   el++l+++Gkl +v+  v+pl+e+a+Ah ++es++++GK+ 
    CCE26598.1 281 ELFTLVASGKLDVVIHDVYPLSEVARAHVDIESRKTTGKLL 321
                   ***************************************96 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.9e-10   5.8e-07       2      63 ..      35      92 ..      34     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.9e-10
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-S CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvep 63
                 +vl+k + +g++  D  + +g   ++++lp+ilG E++G+v++     +++ vG+rVv   
  CCE26598.1 35 SQVLVKNEFSGVNYIDTYFRTG--LYPAQLPIILGREAAGTVVASQ--SSQVPVGTRVVYMG 92
                68*****************999..8******************966..568*******9865 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.8e-09   8.3e-06      15      99 ..      19      98 ..      10     110 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2.8e-09
     ADH_N_2 15 esdfeleeeelpelkdGevlvralylSvDPymRgrmndaksyvepvelgdvmrggavgeVveSknpdfkvGdlVvgllgwqdyav 99
                +s ++l+++++pe+ + +vlv++++ +v  y+ ++ ++      p +l   +  +a g Vv+S++++++vG+ Vv + g+ +ya 
  CCE26598.1 19 PSILQLKDVPVPEPSASQVLVKNEFSGVN-YIDTYFRTGLY---PAQLPIILGREAAGTVVASQSSQVPVGTRVVYM-GMGTYAQ 98
                56689*********************985.55555544333...55555666667888999************9854.3333333 PP

>> Ribosomal_L11  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.3   1.4e-05     0.042       7      61 ..     131     206 ..     127     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
                    HHHHHHHTXSSXXSST...................TTSXXEEEEHHHHHHHHHHHGGGHT..XS.SHHHHHHHHHH CS
  Ribosomal_L11   7 ylLkkaagiekgsgkp...................gketvGtvslkqvyeIAkiKksdln..aalsleaavksilg 61 
                    +l+k+aa+++kg+ +                    g +++Gt s ++ +e Ak+K  +++  ++ ++ a vk+i g
     CCE26598.1 131 TLIKEAANVQKGQWTLvhaaaggvglllvqmlrsiGAKVIGTASTEEKRELAKTKGAEWTidSGEDVVAKVKEITG 206
                    6788899****98877455555555555555555555999******************998899999999999977 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   3.6e-05      0.11       2      87 ..     144     219 ..     143     232 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.6e-05
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi 87 
                 + lv  a++G+G+ +++ l + Gakv+ ++++eek e ++++ ++        + ++ + e+v a v+++     ++d++  ++G+
  CCE26598.1 144 WTLVHAAAGGVGLLLVQMLRSIGAKVIGTASTEEKRELAKTK-GA--------EWTIDSGEDVVAKVKEITGG-HGIDAIFDGVGM 219
                 578999**************************9998444333.33........33444444444444444222.346666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2400.98
//
Query:       CCE26599.1  [L=372]
Description: probable UDP-glucose 4-epimerase Gal10 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-48  163.6   0.0    6.7e-48  163.2   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    9.6e-45  153.4   0.0    1.6e-44  152.6   0.0    1.4  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    2.3e-15   56.4   0.0    1.6e-14   53.6   0.0    1.9  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    4.5e-14   52.3   0.0    3.4e-12   46.1   0.0    2.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.2e-11   44.3   0.0    1.8e-11   43.7   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
    7.1e-09   35.4   0.0    1.2e-08   34.6   0.0    1.4  1  adh_short        short chain dehydrogenase
    2.6e-08   34.0   0.0    4.5e-08   33.2   0.0    1.4  1  KR               KR domain
    5.4e-06   25.8   0.0    0.00024   20.4   0.0    2.3  1  NAD_binding_4    Male sterility protein
    2.8e-05   24.1   0.0    4.8e-05   23.3   0.0    1.4  1  NAD_binding_10   NAD(P)H-binding
    9.4e-05   22.1   0.0    0.00014   21.5   0.0    1.2  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
      0.017   14.7   0.1      0.028   14.0   0.1    1.3  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
      0.026   14.1   0.0       0.13   11.8   0.0    2.0  2  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.2   0.0   4.5e-51   6.7e-48       1     241 []       6     281 ..       6     281 .. 0.92

  Alignments for each domain:
  == domain 1  score: 163.2 bits;  conditional E-value: 4.5e-51
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHHHSHHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkee.qpdavihlAavggvaassedpadfiekn 91 
                 +lVtG+tG+iGs ++  lle+gy+v+ +d+l ++s+ a ++         e+++ld+td++al+++f+++ ++d vih+Aa + v++s e p ++++ n
  CCE26599.1   6 VLVTGGTGYIGSFTTLTLLENGYDVVIVDSLYNSSKVAVDRIEkicgrrpEFYQLDVTDEKALDEVFAKHpAIDSVIHFAALKAVGESGEIPLEYYRVN 104
                 79*****************************99888877665588****************************************************** PP

                 THHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSS....SSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT............-EEEEEEESEEES CS
   Epimerase  92 lqgtlnlleaarkagvkrllflsSsevYGkdae....qpkeettltgplkpnspYaaaKlageklveayaaqyg............lnaiilrlfnlyG 174
                 + g+  ll  + +++v +++f sS++vYG+ ++    +p  e +   p+ p++ Y+++K ++e +++++ +++             +n   lr+fn +G
  CCE26599.1 105 VGGSIALLRSMERNNVSNMVFSSSATVYGDATRfpnmIPIPEHC---PIGPTNTYGRTKSMIEDVITDWVNAQRnnskkvgkpaeqWNGALLRYFNPCG 200
                 ********************************977655799999...********************999988569*********************** PP

                 TT.......S-TTSTTSHHHHHHHHHHTTS.SSEEEET......TST-EEEEEEHHHHHHHHHHHHHHHTT-STTE.EEEES CS
   Epimerase 175 pr.......ngegevsrvipalirkilegk.qevtllg......dgtalRdflyveDvaeaillvlehvdagdkge.iyniG 241
                 ++       +++g + +++p l+ k+++g  ++++++g      dgta Rd+++v D+a+++l++l+  +++++g  ++n+G
  CCE26599.1 201 AHpsgimgeDPQGVPYNLLP-LLGKVATGDrEKLLVFGddykssDGTAIRDYIHVLDLARGHLAALNYLRENKPGVkAWNLG 281
                 ****9998666666888888.78888888889***********************************988876654577776 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.6   0.0   1.1e-47   1.6e-44       1     331 [.       7     343 ..       7     344 .. 0.82

  Alignments for each domain:
  == domain 1  score: 152.6 bits;  conditional E-value: 1.1e-47
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEE..EESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHTT CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivr..rsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev.qpdevynLAAqshVdvsfe 93 
                    L+TG++G+iGs+++  Lle+gy+v++++   +ss+++++rie++         ++ ++++ D+tD+++l++++a++  +d v+++AA ++V++s e
     CCE26599.1   7 LVTGGTGYIGSFTTLTLLENGYDVVIVDSlyNSSKVAVDRIEKICG-------RRPEFYQLDVTDEKALDEVFAKHpAIDSVIHFAALKAVGESGE 95 
                    9************************998854667778888888874.......5789******************989****************** PP

                    SHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-S....SSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH--............ CS
  GDP_Man_Dehyd  94 kPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvq....evpqtEttpfyPrsPYaaaKlyadwivvnyreaygl............ 173
                     P ++++vnv G + LL  + + +++    ++++S+++vYG+++     +p+ E+ p+ P++ Y+ +K + + +++++ +a+              
     CCE26599.1  96 IPLEYYRVNVGGSIALLRSMERNNVS---NMVFSSSATVYGDATrfpnMIPIPEHCPIGPTNTYGRTKSMIEDVITDWVNAQRNnskkvgkpaeqw 188
                    ********************998875...7999*********97333357899***************9998888888777444344456666554 PP

                    -EEEEEE-E....EESTTS-TT..SCCCHHHHHHHHHHTTS.-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCC CS
  GDP_Man_Dehyd 174 favngilfn....hesprrget..fvtrkitravarialgk.qevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvela 262
                         ++fn    h s  +ge+   v  ++ + + ++a g  ++ l++G+ ++  d + ++Dy+++++l+  +++    + a +   + +  v++ 
     CCE26599.1 189 NGALLRYFNpcgaHPSGIMGEDpqGVPYNLLPLLGKVATGDrEKLLVFGDDYKSSDGTAIRDYIHVLDLA--RGH----LAALNYLRENKPGVKAW 278
                    667789999***********95449999999*********94556667********************83..333....44555555555555555 PP

                    HHCCCH.HHHHH............TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHH CS
  GDP_Man_Dehyd 263 flelgk.tiewegkgeeevgrakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvre 331
                    +l  g+ ++++     e++++ ++      +++ + +r+g+v  l ++++ a++eL+Wk + ++e+ +++
     CCE26599.1 279 NLGSGRgSTVF-----EMIKAFSAVVGRDLKYEVVARRQGDVLDLTANPTLANKELNWKTELTMEKACED 343
                    55555412222.....345556666677899999********************************9987 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   1.1e-17   1.6e-14       1     162 [.       7     172 ..       7     279 .. 0.73

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 1.1e-17
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD..lrespelleelskvnvkk..viegDvtdkdkleealeg...vdvvihlaslvdvag.kltedeimkv 91 
                 +vtGg+G++G+    +L++ +   +v ++D   + s+   ++++k+  +   + + Dvtd++ l+e+  +   +d vih a+l  v        e+++v
  CCE26599.1   7 LVTGGTGYIGSFTTLTLLENG--YDVVIVDslYNSSKVAVDRIEKICGRRpeFYQLDVTDEKALDEVFAKhpaIDSVIHFAALKAVGEsGEIPLEYYRV 103
                 69**********999999999..69999996444455556888886555558**************9975333799*********9874455667**** PP

   3Beta_HSD  92 nvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNg 162
                 nv G   +l +  +++v  +v+ Ssa v g+ ++  +++   E+ ++   ++++y ++K++ E+++    +
  CCE26599.1 104 NVGGSIALLRSMERNNVSNMVFSSSATVYGDATRFPNMIPIPEHCPIG--PTNTYGRTKSMIEDVITDWVN 172
                 *******************************99999999888988765..6799**********9975333 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   2.3e-15   3.4e-12       1     154 [.       6     172 ..       6     200 .. 0.76

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 2.3e-15
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT...T-SEEEE------HHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel.kvdvvfhaAAlKhVPlv 93 
                      vlvtG++G iGs  + ++l++    +i+ +    +  ++++    ++  ++ +++      dv+d++ l++++ ++  +d v+h AAlK V   
       CCE26599.1   6 VLVTGGTGYIGSFTTLTLLENGYDVVIVDSLYNSSKVAVDRIE--KICGRRPEFY----QLDVTDEKALDEVFAKHpAIDSVIHFAALKAVGES 93 
                      8*******************99999998777777777776643..4444455555....68************988579*************** PP

                      HHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE.....GGG..............SS--SHHHHHHHHHHHHHHHGGG CS
  Polysacc_synt_2  94 eenpleaiktNvlgtenvieaaieagvkkvvliSt.....DKA..............vnPtnvmGatKrlaekllqalak 154
                       e ple  + Nv g+  +++   +++v+++v+ S+     D A              + Ptn++G tK + e +++   +
       CCE26599.1  94 GEIPLEYYRVNVGGSIALLRSMERNNVSNMVFSSSatvygD-AtrfpnmipipehcpIGPTNTYGRTKSMIEDVITDWVN 172
                      *******************************9997222222.11222222222222245777777777777766665544 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   1.2e-14   1.8e-11       2     138 ..       5     169 ..       4     176 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 1.2e-14
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT......................T--TTSHHHHHHHHHHH.--SEEEE------HHHHHHSHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre......................eldltdaeavaellkea.kpdvvvnaAAytavDkaEseeeaa 74 
                    ++lvtG++G +Gs  +  l e+g++v+ +++                       +ld+td++a++e+++++   d v++ AA +av +  + + + 
     CCE26599.1   5 TVLVTGGTGYIGSFTTLTLLENGYDVVIVDSLynsskvavdriekicgrrpefyQLDVTDEKALDEVFAKHpAIDSVIHFAALKAVGESGEIPLEY 100
                    58**************************98889999*******************************987625689******************** PP

                    HHHHTHHHHHHHHHHHHCT-.EEEEEEEGGGS-S-....TTS-B-TTS----SSHHHHHHHHHHHHHHH CS
  RmlD_sub_bind  75 yavnaeavealAeaaaavga.lLihvStDyVFdGe....kkrpYeeddetsPlnvYGrtKlaGEqavla 138
                    y+vn+ ++ al +  ++ ++  +++ S+  V+  +    +  p  e+ + +P n+YGrtK   E ++ +
     CCE26599.1 101 YRVNVGGSIALLRSMERNNVsNMVFSSSATVYGDAtrfpNMIPIPEHCPIGPTNTYGRTKSMIEDVITD 169
                    ***************999983599999999996555877778899******************999876 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   8.2e-12   1.2e-08       2     113 ..       5     109 ..       4     133 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 8.2e-12
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 +vlvtG+++ IG  +  +l+++G++vv+vd+  +  + +++ +++  g++  ++q+Dvtd++++++++    +k+  +d +++ A+++ +g+  e+  e
  CCE26599.1   5 TVLVTGGTGYIGSFTTLTLLENGYDVVIVDSLYNSSKVAVDRIEKIcGRRPEFYQLDVTDEKALDEVF----AKHPAIDSVIHFAALKAVGESGEIPLE 99 
                 79*********************************************************987776665....566999*99999999888888777654 PP

                 HHHHHHHHHTHHHH CS
   adh_short 100 ewervievNltgvf 113
                     ++ vN+ g +
  CCE26599.1 100 ----YYRVNVGGSI 109
                 ....4556666655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0     3e-11   4.5e-08       1     144 [.       4     135 ..       4     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 3e-11
                 SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TT CS
          KR   1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle 98 
                 gt+l+tGG+G +G  ++ +l+e+g   +++ s   ++++     ++++e+  g + e++++Dv+d++a+ +++++     p+i  vih A + + +   
  CCE26599.1   4 GTVLVTGGTGYIGSFTTLTLLENGYDVVIVDSLY-NSSKV---AVDRIEKIcGRRPEFYQLDVTDEKALDEVFAKH----PAIDSVIHFAALKAVGESG 94 
                 89****************************9999.44444...45666665578999**********999999877....79********998777666 PP

                 T--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--T CS
          KR  99 emtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsa 144
                 e   e     ++  v G+  L + +e++++  +v fSS a+++g a
  CCE26599.1  95 EIPLE----YYRVNVGGSIALLRSMERNNVSNMV-FSSSATVYGDA 135
                 65554....5677899999999999999999887.56667777765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.6e-07   0.00024       1     192 [.       8     172 ..       8     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.6e-07
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    +TG+TG++G++    LL++  +v +++    +s++ a +R+e+              + +r ++++ D+++++  L+e  +++    +d +ih aA
     CCE26599.1   8 VTGGTGYIGSFTTLTLLENGYDV-VIVDSLYNSSKVAVDRIEKI-------------CGRRPEFYQLDVTDEK-ALDEVFAKHP--AIDSVIHFAA 86 
                    7******************9995.44545555566999999333.............3677778888999999.7887777776..8********* PP

                    S-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHH CS
  NAD_binding_4  97 tvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvre 189
                       + e+ +     +rvNv G   +l+  ++ +    +++ S+a+v+g+ + ++             +    +    g +ntY ++K + E+++ +
     CCE26599.1  87 LKAVGESGEIpleYYRVNVGGSIALLRSMERNNVS-NMVFSSSATVYGDAT-RFP-----------NMIPIPEHCPIGPTNTYGRTKSMIEDVITD 169
                    999988776544589************99866555.99**********999.552...........24456666778999**************99 PP

                    HHH CS
  NAD_binding_4 190 arr 192
                    + +
     CCE26599.1 170 WVN 172
                    875 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   3.2e-08   4.8e-05       1     106 [.      10     136 ..      10     156 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.2e-08
                     TTTSHHHHHHHHHHHHC-T-EEEEE..ETTHHHCH..HHHCT..TTCEEEE--TT-CCHHHHHHTT-SEEEES-........--TCC....HHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtal..vRnpekla..eleae..eglevvegdvtdvedlaealkgadaVvsal........ggggk....deeg 77 
                     G+tG +G+  +  ll++g ++v+++    n++k+a  ++e+    + e  ++dvtd+++l e+++ + a+ s +        g +g+        
      CCE26599.1  10 GGTGYIGSFTTLTLLENG-YDVVIVdsLYNSSKVAvdRIEKIcgRRPEFYQLDVTDEKALDEVFAKHPAIDSVIhfaalkavGESGEipleY--Y 101
                     9****************5.9998765555777775323442233799******************886654444333455442222255541..1 PP

                     ......HHHHHHHHHHCT--EEEEEEETTTTSGCG CS
  NAD_binding_10  78 ......aknivdaakeagvkRfvlvsaigvgdevp 106
                            +++++ +++++v+ +v+ s++ v+ ++ 
      CCE26599.1 102 rvnvggSIALLRSMERNNVSNMVFSSSATVYGDAT 136
                     556677************************96543 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   9.5e-08   0.00014       6      93 ..      15      99 ..      12     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 9.5e-08
                  HHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2  6 IGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93
                  IG  +  +l e+G++vv++d   ++ k +v+++++ +g++  ++++DVtde+++++++++    +  +D +++ a+      g+  e++ e
    CCE26599.1 15 IGSFTTLTLLENGYDVVIVDSLYNSsKVAVDRIEKICGRRpeFYQLDVTDEKALDEVFAK----HPAIDSVIHFAALKAV--GESGEIPLE 99
                  88889999************99888899**********77668*********99998876....7899999999998776..555555555 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.9e-05     0.028       7      37 ..      11      43 ..       5      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
                    --STTHHHHHHHHHHCTSEEEEE-S..-HHHHH CS
  UDPG_MGDP_dh_N  7 GlGYvGlvtaavlaeighevigvDi..deekvd 37
                    G+GY+G  t + l e g +v++vD   +++kv+
      CCE26599.1 11 GTGYIGSFTTLTLLENGYDVVIVDSlyNSSKVA 43
                    9***********************533666665 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.5e-05      0.13       1      64 [.       6      74 ..       6     130 .. 0.74
   2 ?   -0.1   0.0      0.38   5.7e+02     213     232 ..     287     306 ..     267     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.5e-05
                EEESSTTSHHHHHHHHHHHHHT-EEEEE..ES-S...-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvral..vRdt...kselakslkeaGvelvkgdlddkeslvealkg 64
                +lv+G+TG++G++ +  ll++g++v ++  + ++     ++++++  +  e+ + d+ d++ l+e++ +
  CCE26599.1  6 VLVTGGTGYIGSFTTLTLLENGYDVVIVdsLYNSskvAVDRIEKICGRRPEFYQLDVTDEKALDEVFAK 74
                79**********************987522333333333334444444456666666666666666655 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.38
                 -HHHHHHHHHHHHTS-EEEE CS
        NmrA 213 sgneivelfekkigktvkYt 232
                 ++ e++++f+ ++g+  kY+
  CCE26599.1 287 TVFEMIKAFSAVVGRDLKYE 306
                 66799*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2739.78
//
Query:       CCE26600.1  [L=1082]
Description: uncharacterized protein CPUR_00069 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-08   32.1   0.4    0.00017   21.6   0.4    2.6  1  Sad1_UNC        Sad1 / UNC-like C-terminal
     0.0006   19.8   0.6     0.0006   19.8   0.6    4.1  4  FlxA            FlxA-like protein
  ------ inclusion threshold ------
      0.014   15.6   0.8      0.039   14.2   0.8    1.7  1  MecA_N          NTF2-like N-terminal transpeptidase domain
      0.056   12.9   0.4      0.085   12.3   0.4    1.1  1  NQR2_RnfD_RnfE  NQR2, RnfD, RnfE family
        2.4    8.5   8.3        2.1    8.6   1.0    3.0  2  Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_


Domain annotation for each model (and alignments):
>> Sad1_UNC  Sad1 / UNC-like C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.4   4.6e-08   0.00017      29     130 ..     938    1073 ..     912    1075 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 4.6e-08
                  EEEEEEEEEEEEEEEEEEE---GGGSG.-TTSB-EEEEEEESSTT---............................-EEEEEEE-..-TTS-SEEEE CS
    Sad1_UNC   29 gfvvieLseeiiveavtlehveksvap.isSapKdfevsgskrypekk............................wvllgefsy..dedgknaqtF 94  
                  + ++++L++++i++ + +eh+    +   +  pK +ev++   + e                               v++++f y  ++ ++ +   
  CCE26600.1  938 ASLAVQLAHRVIPQHIVIEHILPGATTePNARPKVIEVYAEILDAEVRervldfgaaffpddetdwnftppdydprFVKITQFIYeaADLHNGVHVH 1034
                  4678999999999999999998866557899999999986433333323477778888888888888888888888999999999533446777778 PP

                  E--TT---...-EEEEEEEE--BSS-SSEEEESEEEEEE CS
    Sad1_UNC   95 eleeskdi...lvkyvkleilsnyGneeytclyrlrVyG 130 
                   l ++ ++   +++++ ++  snyG++++tc yr+r+yG
  CCE26600.1 1035 RLSSELMAlgaTTDHIIVRAVSNYGAKNHTCFYRVRLYG 1073
                  888887669999**************************9 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.8       2.3   8.2e+03      67      92 ..      27      52 ..      13      61 .. 0.57
   2 !   19.8   0.6   1.7e-07    0.0006      12      83 ..     354     423 ..     338     428 .. 0.84
   3 ?   -0.8   3.2      0.41   1.5e+03      52      85 ..     741     775 ..     722     786 .. 0.76
   4 ?    2.3   3.6     0.047   1.7e+02      50      80 ..     788     818 ..     780     833 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.3
        FlxA 67 qlqqqqaekaqekqqsekeekskskq 92
                +++++++e + +k+ + +++++++++
  CCE26600.1 27 RHEAEEDEHEISKNPTFQQQSEQQTA 52
                55555555555544444444444433 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 1.7e-07
        FlxA  12 ssgsasqiasLqkQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqse 83 
                 + g++s+ +sL  Q knl k+ +  ++s+  +++ + +++  iq  I++++a++a+ q+ qa+++++++ ++
  CCE26600.1 354 TRGTTSNFSSLFAQAKNLAKS-SPFGNSKRYPAD-QDEREAAIQRDIDDVEAELARAQRLQASEESRQRWQQ 423
                 5688999999********998.788999788777.77999**********************9999887665 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.41
        FlxA  52 qliqaQIq.qlqaQIaqlqqqqaekaqekqqseke 85 
                 ++ ++ ++ +++ Q+aq + q+   +++ q  ++e
  CCE26600.1 741 KEFEERLTkIVKEQLAQAEDQKGGSQRQGQLVTRE 775
                 55555554156899999999999999888876665 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.047
        FlxA  50 qqqliqaQIqqlqaQIaqlqqqqaekaqekq 80 
                  + +i a+++ lq Q++ql qq  e a ++ 
  CCE26600.1 788 HRSEIRAELKELQPQLEQLVQQSVELATQQI 818
                 5667778888888888888777766666554 PP

>> MecA_N  NTF2-like N-terminal transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.8   1.1e-05     0.039       4      47 ..     706     752 ..     703     761 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHTT-HHHHHCTB--BS...SBSS-HHHHHHHHHHHCC CS
      MecA_N   4 eaaetFldawakgdykkaasllseqs...kkeisekeavekyqaiyd 47 
                  +++tF + w k + +k+a++l +++   k++ s+ke++e++ +i +
  CCE26600.1 706 GKMTTFWNTWVKDNDEKIAQMLGSAVdqiKSSGSQKEFEERLTKIVK 752
                 579******************99999999**************9975 PP

>> NQR2_RnfD_RnfE  NQR2, RnfD, RnfE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   2.4e-05     0.085     176     237 ..     465     526 ..     442     531 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.4e-05
  NQR2_RnfD_RnfE 176 llgglyLlvrkiiswripvsvlatvavlsllfnllaapplfhllsGglll.gafFmatdpvts 237
                      l gl Ll+  + +w + ++ ++t + l   ++   +++l h+++G l++ gafF+at+ v+ 
      CCE26600.1 465 YLRGLALLMDMLLDWITTLVHFITPTRLCESLS-SVLEFLPHIIVGLLAFaGAFFIATEVVSR 526
                     566888999999999988887777666665555.3589**********9978*********96 PP

>> Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_RAQPRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.0   0.00057       2.1       8      46 ..     390     429 ..     384     435 .. 0.82
   2 ?    2.2   1.1     0.058   2.1e+02       6      33 ..     793     821 ..     789     828 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00057
  Plasmid_RAQPRD   8 eLakllkqLdqlqalveraeaqakqe.ekaRvhfdYdrlr 46 
                     + a++++ +d+++a ++ra++ +++e +++R + + ++++
      CCE26600.1 390 REAAIQRDIDDVEAELARAQRLQASEeSRQRWQQRWRWIK 429
                     4489****************99988867788887777776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.058
  Plasmid_RAQPRD   6 reeLakllkqLdql.qalveraeaqakqe 33 
                     r+eL +l+ qL+ql q++ve a +q  q 
      CCE26600.1 793 RAELKELQPQLEQLvQQSVELATQQIPQG 821
                     899********995378899888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1082 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1416  (0.0789782); expected 358.6 (0.02)
Passed bias filter:                      761  (0.0424452); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.41
# Mc/sec: 7954.56
//
Query:       CCE26601.1  [L=844]
Description: probable ATP-dependent RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-47  160.8   0.0    5.3e-47  159.8   0.0    1.5  1  DEAD        DEAD/DEAH box helicase
    3.2e-25   88.6   0.0    1.7e-24   86.3   0.0    2.3  2  Helicase_C  Helicase conserved C-terminal domain
      5e-21   74.7   0.0    1.5e-20   73.1   0.0    1.9  1  DUF4217     Domain of unknown function (DUF4217)
    5.7e-08   32.9   2.1      2e-07   31.2   0.0    2.5  2  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.8   0.0   1.2e-50   5.3e-47       1     175 [.      74     243 ..      74     244 .. 0.97

  Alignments for each domain:
  == domain 1  score: 159.8 bits;  conditional E-value: 1.2e-50
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng 97 
                 t++Q++aipl+l+++d+l+aa+TGsGKTlaflipvl+++y+   ++ +g  ali++PtreLa q+++ l+k++ y   ++ l+igg++ +++ ++l ++
  CCE26601.1  74 TEVQQQAIPLALKNKDILGAAKTGSGKTLAFLIPVLEKLYRAqwTEYDGLGALIISPTRELAVQIFEVLRKIGRYHVFSAGLVIGGKNLKEEAERL-SR 171
                 789**************************************9999******************************889999***************.** PP

                 CSEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 ++i+v tpgr++++l +t  ++ +++++lVlDEadr++d+gf+  +++++++l       +++rq++++SAT +k+v++
  CCE26601.1 172 MNILVCTPGRMLQHLdQTAGFDANNLQILVLDEADRIMDMGFQSAVDALIEHL-------PKSRQTLMFSATQSKKVSD 243
                 ***************88999*********************************.......68899********999877 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         1   4.6e+03       5      31 ..     219     243 ..     215     272 .. 0.65
   2 !   86.3   0.0   3.8e-28   1.7e-24       1     110 [.     280     390 ..     280     391 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1
                 HHHHHHHHTTTTSEEEEEESSHH.HHHH CS
  Helicase_C   5 allellkleeeggkilifvntid.rlek 31 
                 al+e l    + +++l+f+ t++ ++++
  CCE26601.1 219 ALIEHL---PKSRQTLMFSATQSkKVSD 243
                 444444...7889999999999864433 PP

  == domain 2  score: 86.3 bits;  conditional E-value: 3.8e-28
                 HHHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C   1 dkleallellkleeeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv 97 
                 +k+++l+ ++ +++ ++ki++f+ + +++    + +++ + gi  + lhg+ +q  r+ei ++f + ++ +L atdv++rGid+p v+ Vi+ d+p++v
  CCE26601.1 280 EKIDTLYGFI-KSNLKSKIIVFLSSGKQVRFvYESFRHLQpGIPLLHLHGRQKQVARLEITSRFTAAKQSCLFATDVVARGIDFPAVDWVIQADCPEDV 377
                 5899999998.8999************88445455533347********************************************************** PP

                 HHHHHHHTTSSST CS
  Helicase_C  98 tsyiqriGRtgRa 110
                 ++yi+r+GRt+R+
  CCE26601.1 378 DTYIHRVGRTARY 390
                 ************7 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   3.4e-24   1.5e-20       2      61 .]     433     492 ..     432     492 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 3.4e-24
     DUF4217   2 qqkleslcakdrdlkelAqkAfvsyvraYsvhlake..iFrvkkLdlealAksfGLleaPki 61 
                 ++ l+++c++++dlk+l+qkAf+sy r  s hl+k+  iF++kkLdl+a+A+ +GL+++P+i
  CCE26601.1 433 KNDLQNMCFQNPDLKYLGQKAFISYTR--SIHLQKSkdIFQLKKLDLDAFAAGMGLPGTPQI 492
                 689************************..*******************************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   4.4e-11     2e-07       5     168 ..      74     236 ..      65     239 .. 0.86
   2 ?   -0.8   1.2      0.29   1.3e+03      88     129 ..     529     576 ..     500     597 .. 0.67

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 4.4e-11
                 -HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.. CS
      ResIII   5 reyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee....kflflvprkslleqtleefkkflseaykeigkkvsgdkkkake 98 
                  e Q++ai   l      ++k +l ++ TG+GKTl   + + e+l+++++ e     +l++ p+++l  q  e ++k+   ++ ++g ++ g++ k+++
  CCE26601.1  74 TEVQQQAIPLAL------KNKDILGAAKTGSGKTLAFlIPVLEKLYRAQWTEydglGALIISPTRELAVQIFEVLRKIGRYHVFSAGLVIGGKNLKEEA 166
                 455555555444......678899999********998999*******9999***************************9999999999*****99999 PP

                 .....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT-.--SEEEEEESS CS
      ResIII  99 kdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekf.keavllglTAT 168
                 ++ + ++ilv t  ++ +++     ++  ++ ++ ++++ DEa r+ ++   +++ +++e++ k+   l ++AT
  CCE26601.1 167 ERLSRMNILVCTPGRMLQHL----DQTAGFDANNLQILVLDEADRIMDMgfqSAVDALIEHLpKSRQTLMFSAT 236
                 999*****************....677888888888************855446666688884457889****9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.29
                 EESSS-B--.............-SEEEEEHHHHHHTH........HHH CS
      ResIII  88 kvsgdkkka......kekdstnkkilvttiqsldadseeeeeeseell 129
                 k++++kk++      k+ +++n ++l + +++l  d +++++++++++
  CCE26601.1 529 KKTSKKKQEvrtkydKMFERQNQDVLSAHYSKLVVDDDSNNNNKKKKG 576
                 222222222344455566788888888888888888866544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1790  (0.0998383); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 5844.40
//
Query:       CCE26602.1  [L=230]
Description: uncharacterized protein CPUR_00071 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-60  201.6   0.0    9.4e-60  201.3   0.0    1.1  1  Acid_PPase  Acid Phosphatase


Domain annotation for each model (and alignments):
>> Acid_PPase  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3   0.0   5.3e-64   9.4e-60       1     168 [.      32     215 ..      32     216 .. 0.97

  Alignments for each domain:
  == domain 1  score: 201.3 bits;  conditional E-value: 5.3e-64
                 ---SEEEE-STTTSSSS-TTTSS-S-EEE-TTS.-EEETT--EE---TTHHHHHHHHHH.........TT--EEEEE--S-HHHHHHHHHHTT-G.... CS
  Acid_PPase   1 elpklivFDLDyTLWpfevdtlvsaplkkeskksevvDrrgeelklypdveeileelks.........kevklavaSrtdepdlarelLkllein.... 86 
                 +lpklivFDLDyTLWpf+vdt+vs+plk++  +++ +D+ g  ++ly dv+ il+ l +         k +kl vaSrt++p+lar+lLk+l++     
  CCE26602.1  32 PLPKLIVFDLDYTLWPFWVDTHVSPPLKPSPARTSATDKFGDDFALYADVPWILQLLPHatgcdsspgKPIKLGVASRTSAPSLARDLLKMLHLPplee 130
                 58*****************************************************8888889999********************************** PP

                 .............GGESE.EEESSS-HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHHHHHH CS
  Acid_PPase  87 ...dakekekklldvfdd.veiykgsktkhfeklkkktgieyedmlfFDdesrnievesrlgvtfvlvpdGltreefekglkewrk 168
                    + k+k+++++dvfd+ +eiy+gsk++hfe+++kktgi +edmlfFDde+rn e e+ lg t+ lvpdGl+++e+ekg++ewr+
  CCE26602.1 131 ggeKPKSKSRRAIDVFDGpMEIYPGSKIRHFEAIHKKTGIGFEDMLFFDDERRNAETEK-LGLTMRLVPDGLCWQEVEKGVEEWRR 215
                 *999999***************************************************9.************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1801.72
//
Query:       CCE26603.1  [L=480]
Description: related to phosphatidylinositol/phosphatidylcholine transfer protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.3e-26   90.6   0.0    1.2e-25   90.1   0.0    1.2  1  CRAL_TRIO    CRAL/TRIO domain
    1.6e-09   37.8   0.1    4.2e-09   36.5   0.1    1.7  1  CRAL_TRIO_N  CRAL/TRIO, N-terminal domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   1.3e-29   1.2e-25       8     158 ..     127     306 ..     120     307 .. 0.92

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 1.3e-29
   CRAL_TRIO   8 kvgihgrDkegrpvlylrlgrfdpkklsle..............................elvralvlvlerllkeleedgqvegvtvviDlkglslsk 76 
                 ++    rD++g p++++ +++ d k++s+                               +l r++  ++++ll+    + +++  t ++D++g++l++
  CCE26603.1 127 PQWTGRRDRRGTPLFVFDVKKLDHKTVSEYekqgaktnvsdartdgktppgllrlfalyeNLTRFTQPFCTQLLDRDHAEVPITMSTNIVDITGVGLKQ 225
                 5555567******************777445789999********************999999999999999998666689***************877 PP

   CRAL_TRIO  77 mlwkpisllkkilkilqdnyperlgkilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGG 158
                 +  +  s +++ +++  ++ype+l  i+i+ aP +f++++  v+ + d+ t +Ki++++p+++++ le+yidp+++pk++GG
  CCE26603.1 226 FW-NLKSHMQSASQLATAHYPETLDMIFIIGAPIFFSTVWGWVRRWFDPITVSKIHVLGPHEVKSVLERYIDPSNIPKKYGG 306
                 76.55****************************************************************************9 PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   4.6e-13   4.2e-09       1      54 []      50      97 ..      50      97 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 4.6e-13
  CRAL_TRIO_N  1 aydellahlqeseyklteeekfWltre...dhddaclLRfLRArkwdvekAikrLed 54
                 a+d+l+a l+e ++          tr    +hdd++lLR+LRAr+w  e+A+ +++d
   CCE26603.1 50 ALDKLKALLEEGGLW---------TRGppaSHDDQTLLRYLRARRWVPEDAYRQFKD 97
                 578888888888887.........777888************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3264.34
//
Query:       CCE26604.1  [L=874]
Description: related to tol protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-21   76.8   0.0    4.2e-21   75.8   0.0    1.6  1  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0   2.4e-25   4.2e-21       1     146 []     349     476 ..     349     476 .. 0.92

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 2.4e-25
         HET   1 YeaLSYvWgdskekeeievngklleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsnAelvivalgsesedsgllalealral 99 
                 Y+aLSYv g++ +           ++++ ++da+ v+ +l+ rylW D++CI+ d+ +e+++++++m++I++ Ael+i+a+ + +++ gl+++ a ++ 
  CCE26604.1 349 YVALSYVAGKDVR----------DSWPKVVQDAIAVTLELKFRYLWMDKLCIDSDNATERRQHIERMDEIFEGAELTIIAAHGRDARDGLPGVGANTRP 437
                 99*******9966..........789************************************************************9999999999888 PP

         HET 100 kkekleekeielkksaekkkellekeeraieellespwfkRvWvlQE 146
                  +   +  ++ +         l+++ ++   ++ +s+wf+R+W++QE
  CCE26604.1 438 IQPAYRF-SDGN-------VTLVSSLRDPRLDIKNSTWFSRGWTYQE 476
                 8888888.3333.......358999*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 6082.32
//
Query:       CCE26605.1  [L=1877]
Description: uncharacterized protein CPUR_00074 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-36  124.9  15.4    5.3e-07   30.1   0.0   14.1 13  Ank_2     Ankyrin repeats (3 copies)
    2.4e-15   56.2  25.6     0.0068   16.8   0.0   15.0 16  Ank       Ankyrin repeat
    4.8e-15   54.2  20.1        1.4    9.7   0.0   16.6 22  Ank_3     Ankyrin repeat
      6e-15   55.4  17.6     0.0078   16.8   0.0   13.7 17  Ank_4     Ankyrin repeats (many copies)
    2.7e-07   30.7  18.5     0.0005   20.3   0.0    9.3 11  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     6e-07    0.0022      25      78 ..     143     197 ..     100     202 .. 0.85
   2 ?    4.3   0.1     0.017        61       3      70 ..     210     283 ..     208     291 .. 0.59
   3 ?    3.0   0.0     0.043   1.6e+02      55      83 .]     334     362 ..     313     362 .. 0.76
   4 ?    3.2   0.1     0.037   1.3e+02      41      73 ..     412     446 ..     336     455 .. 0.55
   5 !    8.0   0.0    0.0012       4.2      40      80 ..     531     577 ..     524     580 .. 0.79
   6 !    8.1   0.0    0.0011       4.1      11      77 ..     564     636 ..     550     642 .. 0.72
   7 !    5.5   0.4    0.0071        25       9      48 ..     761     801 ..     753     907 .. 0.87
   8 !   19.7   0.1   2.6e-07   0.00093      12      75 ..     921     987 ..     910     995 .. 0.79
   9 ?    4.5   0.0     0.015        53       4      47 ..    1037    1082 ..    1033    1098 .. 0.64
  10 !    5.2   0.0    0.0091        33      40      80 ..    1138    1183 ..    1125    1185 .. 0.75
  11 ?    3.5   0.0      0.03   1.1e+02      40      67 ..    1274    1304 ..    1260    1319 .. 0.67
  12 !   30.1   0.0   1.5e-10   5.3e-07      10      74 ..    1424    1502 ..    1411    1509 .. 0.80
  13 !   10.0   0.0   0.00029         1       1      73 [.    1512    1609 ..    1512    1619 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6e-07
       Ank_2  25 ngktaLhyAakngnleivklLlehad.ndgrtpLhyAarsghleivklLlekgad 78 
                 +  + L++A+++++ ++++ Ll h+d  + + +L  A+ sg+  iv+lLl +ga 
  CCE26605.1 143 DPSNLLILAVEGNQYDMLQVLLPHVDsHSINQALAPAIHSGNVTIVELLLRYGAC 197
                 44689********99*********88655668******************88875 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.017
       Ank_2   3 lAakn.gnlelvklLl.egadpnkngktaLhyAakngnlei..vklLleh.....ad..ndgrtpLhyAarsghleivk 70 
                 +A+ +   ++lv+lLl +++ p     +  + A++ + + +  v++ l h     ad  ++   +L  A+  g+++++ 
  CCE26605.1 210 QACADqSRCHLVELLLrSESQPA----STWISACMTDATRAasVETVL-HlsrstADgnYNHGEALKTAVALGRQDLAL 283
                 7888624569******7665554....333334444333222356666.223447556433346999999889888765 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.043
       Ank_2  55 tpLhyAarsghleivklLlekgadinlkd 83 
                  +L  A++ +  ++++lL  +ga+i+ +d
  CCE26605.1 334 LALESACETQFHDMAELLARYGASIEYND 362
                 6999***99878*******99*9998765 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.037
       Ank_2  41 ivklLleh......adndgrtpLhyAarsghleivklLl 73 
                 i++lLl +      +       L+ Aa+ g le v +Ll
  CCE26605.1 412 ILRLLLRKgahgvvL----DDMLIDAAEAGDLESVSVLL 446
                 235555544223222....34677777777777777776 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.0012
       Ank_2  40 eivklLleh..adndgrtpLhyAars...gh.leivklLlekgadin 80 
                 ++v+l+l+        + +Lh A+ +   g+   +vklLle+gadin
  CCE26605.1 531 HMVQLFLQTplPGPCLHAALHDAIGKdatGRdDLLVKLLLEHGADIN 577
                 789999987765577899******8877755146899*********9 PP

  == domain 6  score: 8.1 bits;  conditional E-value: 0.0011
       Ank_2  11 elvklLl.egadpn.kngktaLhyAakngnleivklLlehadndgrtp.LhyAarsg....hleivklLlekga 77 
                  lvklLl +gad+n ++g + L   ++++++e++k Lle+a  +   +  + A++ +    +++++ +Ll+ ga
  CCE26605.1 564 LLVKLLLeHGADINfDQG-SGLAGVIRQNDVELLKSLLEKASPQTAAArVMDAIEGSdhreRFNMISMLLDAGA 636
                 399999999999997666.889999999999*9*****995533333337999965244447899999997775 PP

  == domain 7  score: 5.5 bits;  conditional E-value: 0.0071
       Ank_2   9 nlelvklLl.egadpnkngktaLhyAakngnleivklLleh 48 
                 nl+++k Ll  ga+pn ++  aL +A+ + + +++ +Lle+
  CCE26605.1 761 NLSTLKTLLdGGANPNAFKAAALCHAVTAADSKMIDMLLEA 801
                 45689999999999987889999999999999999999985 PP

  == domain 8  score: 19.7 bits;  conditional E-value: 2.6e-07
       Ank_2  12 lvklLlegadpnkngktaLhyAakngnleivklLleh....adndgrtpLhyAarsghleivklLlek 75 
                 +++ Lle +  n++  +aL +Aa+ g+ ++vk+L++h    a+n+g+ ++  A+r g+ e++ +Lle+
  CCE26605.1 921 MCQSLLELSVYNDTASSALLVAARDGDAKLVKMLMAHgasvATNNGQ-AIVEACRGGSAEVLGILLEQ 987
                 6777773322333668**********9999******99876668887.9******9**********76 PP

  == domain 9  score: 4.5 bits;  conditional E-value: 0.015
       Ank_2    4 Aakngnle.lvklLl.egadpn.kngktaLhyAakngnleivklLle 47  
                  A++ ++ e +++ Ll +gadpn +ng   + +A+++ ++  +klLl 
  CCE26605.1 1037 ACNGEDGEaVLRVLLtAGADPNyDNG-ECVVAATRSASIGSLKLLLG 1082
                  444323333889999******96677.55666888876777899885 PP

  == domain 10  score: 5.2 bits;  conditional E-value: 0.0091
       Ank_2   40 eivklLleh...adndgrtpLhyAarsg..hleivklLlekgadin 80  
                   +++ Ll++   +++d + +L  A+ ++   +++v+lLl++ga+++
  CCE26605.1 1138 RVMSDLLKAgleTTEDLHKALNEAVNEDdpEERLVQLLLDHGASPT 1183
                  5565567656555588999******76444579**********987 PP

  == domain 11  score: 3.5 bits;  conditional E-value: 0.03
       Ank_2   40 eivklLleh...adndgrtpLhyAarsghle 67  
                   +vkl+++h   ++++   pL  Aa++    
  CCE26605.1 1274 RFVKLFVSHhadVNYNHGEPLREAASNADVS 1304
                  5789999988555544446999998764333 PP

  == domain 12  score: 30.1 bits;  conditional E-value: 1.5e-10
       Ank_2   10 lelvklLl.egadpn..k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsg...hleivklLle 74  
                  +++++lLl  ga++n  +   + t+L++A+k    ++vklLl +      +d++ rtpL +A + g   ++++v lLl 
  CCE26605.1 1424 NSVIELLLaRGAKVNveSslSHTTPLMLAIKTRRPDLVKLLLLEgaevdvLDYKERTPLSMATSIGgdvSEQMVSLLLA 1502
                  359999*999999998636899**********999*******655666666699********96555777899999983 PP

  == domain 13  score: 10.0 bits;  conditional E-value: 0.00029
       Ank_2    1 LhlAakn.gnlelvklLl.egadpn..k...ngktaLhyAakngnle.............ivklLleh.....adndgrtpLhyAars.ghleivkl 71  
                  L+ Aa++ + l++vk L+ +g+dp+  +   +g++aL   + +g+ +             ++ +L++      ++++g++ L ++ +  + l + + 
  CCE26605.1 1512 LQNAARDlN-LPVVKVLVgSGHDPDfpSplhEGRSALAELCLHGSDNtelvaereramqkVMTFLIDSksdlsIKSNGKSLLELCFEAaDPLATTRS 1607
                  667999745.88************9973577*******99999854444666666665555677776454444337788888777655555666666 PP

       Ank_2   72 Ll 73  
                  Ll
  CCE26605.1 1608 LL 1609
                  66 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.055     2e+02       9      26 ..     179     197 ..     147     202 .. 0.81
   2 ?   -3.7   0.0         5   1.8e+04       4      10 ..     251     256 ..     250     268 .. 0.76
   3 ?   -3.7   0.0         5   1.8e+04      13      26 ..     373     387 ..     368     389 .. 0.76
   4 ?   -3.9   0.0         5   1.8e+04      17      25 ..     412     421 ..     404     422 .. 0.83
   5 !    9.3   0.3   0.00045       1.6       5      28 ..     549     577 ..     545     579 .. 0.74
   6 ?   -1.9   0.0       1.5   5.5e+03      15      25 ..     625     636 ..     612     638 .. 0.72
   7 ?    1.4   0.2      0.14     5e+02      18      31 ..     661     676 ..     654     676 .. 0.82
   8 ?    2.2   0.0     0.082   2.9e+02      16      29 ..     763     777 ..     751     778 .. 0.81
   9 ?    4.0   0.1     0.021        76       4      28 ..     937     962 ..     936     965 .. 0.85
  10 ?   -0.2   0.0      0.47   1.7e+03       9      24 ..     972     989 ..     971     993 .. 0.85
  11 ?    3.9   0.0     0.022        80       6      30 ..    1033    1060 ..    1033    1061 .. 0.71
  12 !    6.7   0.0    0.0029        11      11      29 ..    1163    1184 ..    1154    1186 .. 0.75
  13 ?   -0.9   0.0      0.77   2.8e+03      16      28 ..    1274    1287 ..    1268    1288 .. 0.88
  14 ?    4.7   0.0     0.013        47       3      29 ..    1408    1439 ..    1406    1442 .. 0.74
  15 !   16.8   0.0   1.9e-06    0.0068       4      31 ..    1447    1475 ..    1446    1476 .. 0.85
  16 ?    4.1   0.0     0.021        74       3      22 ..    1479    1501 ..    1477    1535 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.055
                 HHHHTTHHHHHHHH.TTTS CS
         Ank   9 AatngkkriiklLL.hGAn 26 
                 A++ g++ i++lLL +GA+
  CCE26605.1 179 AIHSGNVTIVELLLrYGAC 197
                 5677889999999988997 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5
                 BHHHHHH CS
         Ank   4 TPLHlAa 10 
                 T+LHl +
  CCE26605.1 251 TVLHL-S 256
                 99**9.5 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5
                 TTHHHHHHHH.TTTS CS
         Ank  13 gkkriiklLL.hGAn 26 
                 g ++ i++LL ++A 
  CCE26605.1 373 GEVELISALLtDSAK 387
                 557899***977775 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 5
                 HHHHHH.TTT CS
         Ank  17 iiklLL.hGA 25 
                 i++lLL +GA
  CCE26605.1 412 ILRLLLrKGA 421
                 7899998898 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.00045
                 HHHHHH....HHTTHHHHHHHH.TTTSTT CS
         Ank   5 PLHlAa....tngkkriiklLL.hGAnln 28 
                 +LH A+    t+ +   +klLL hGA++n
  CCE26605.1 549 ALHDAIgkdaTGRDDLLVKLLLeHGADIN 577
                 6777664444444489************9 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 1.5
                 HHHHHHHH.TTT CS
         Ank  15 kriiklLL.hGA 25 
                  ++i++LL  GA
  CCE26605.1 625 FNMISMLLdAGA 636
                 459*****6687 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.14
                 HHHHH.TT.TSTTCBT CS
         Ank  18 iklLL.hG.Anlnald 31 
                 + lLL +G A++n+ld
  CCE26605.1 661 LDLLLqKGaADINLLD 676
                 5688977999***988 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.082
                 HHHHHHHT.TTSTTC CS
         Ank  16 riiklLLh.GAnlna 29 
                 + +k LL+ GAn+na
  CCE26605.1 763 STLKTLLDgGANPNA 777
                 567899*736****8 PP

  == domain 9  score: 4.0 bits;  conditional E-value: 0.021
                 BHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnln 28 
                 ++L +Aa+ g++  +k+L  hGA+++
  CCE26605.1 937 SALLVAARDGDAKLVKMLMaHGASVA 962
                 5788999888899**********984 PP

  == domain 10  score: -0.2 bits;  conditional E-value: 0.47
                 HHHHTTHHHHHHHH..TT CS
         Ank   9 AatngkkriiklLL..hG 24 
                 A+++g+++++  LL  +G
  CCE26605.1 972 ACRGGSAEVLGILLeqDG 989
                 8999**********8446 PP

  == domain 11  score: 3.9 bits;  conditional E-value: 0.022
                  HH.HHHHHTT..HHHHHHHH.TTTSTTCB CS
         Ank    6 LH.lAatngk..kriiklLL.hGAnlnal 30  
                  LH  A+ ng   + +++ LL  GA++n  
  CCE26605.1 1033 LHsEAC-NGEdgEAVLRVLLtAGADPNYD 1060
                  564477.2333588******88****976 PP

  == domain 12  score: 6.7 bits;  conditional E-value: 0.0029
                  HHTT..HHHHHHHH.TTTSTTC CS
         Ank   11 tngk..kriiklLL.hGAnlna 29  
                  ++++  +r ++lLL hGA+++a
  CCE26605.1 1163 NEDDpeERLVQLLLdHGASPTA 1184
                  444477899**********998 PP

  == domain 13  score: -0.9 bits;  conditional E-value: 0.77
                  HHHHHHH.TTTSTT CS
         Ank   16 riiklLL.hGAnln 28  
                  r +kl++ h A++n
  CCE26605.1 1274 RFVKLFVsHHADVN 1287
                  579****999**99 PP

  == domain 14  score: 4.7 bits;  conditional E-value: 0.013
                  BBHHHHHH.......HHTTHHHHHHHH.TTTSTTC CS
         Ank    3 nTPLHlAa.......tngkkriiklLL.hGAnlna 29  
                  +T L +A        +n    +i+lLL +GA +n 
  CCE26605.1 1408 MTLLSWAMaqpqkrvSNS---VIELLLaRGAKVNV 1439
                  688888745555555677...******99**9996 PP

  == domain 15  score: 16.8 bits;  conditional E-value: 1.9e-06
                  BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank    4 TPLHlAatngkkriiklLL.hGAnlnald 31  
                  TPL+lA+    ++ +klLL  GA+++ ld
  CCE26605.1 1447 TPLMLAIKTRRPDLVKLLLlEGAEVDVLD 1475
                  9******555566***99999****9988 PP

  == domain 16  score: 4.1 bits;  conditional E-value: 0.021
                  BBHHHHHHHHTT...HHHHHHHH CS
         Ank    3 nTPLHlAatngk...kriiklLL 22  
                  +TPL +A ++g+   +++++lLL
  CCE26605.1 1479 RTPLSMATSIGGdvsEQMVSLLL 1501
                  7*****9999999********99 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.13   4.5e+02       5      24 ..     147     166 ..     144     170 .. 0.88
   2 ?    5.1   0.0     0.012        44       9      27 ..     179     196 ..     173     196 .. 0.90
   3 ?   -0.9   0.0       1.1   4.1e+03       5      23 ..     207     226 ..     204     230 .. 0.84
   4 ?    0.9   0.0      0.28     1e+03       5      29 ..     335     358 ..     334     359 .. 0.87
   5 ?   -2.8   0.0       4.8   1.7e+04      16      27 ..     411     421 ..     404     422 .. 0.77
   6 !    6.6   0.0    0.0042        15      14      30 ..     561     577 ..     546     578 .. 0.81
   7 ?   -2.6   0.0       3.9   1.4e+04       9      23 ..     587     601 ..     587     605 .. 0.84
   8 ?   -3.5   0.0         5   1.8e+04      14      26 ..     624     635 ..     622     636 .. 0.80
   9 ?    1.1   0.0      0.25   9.1e+02      13      30 ..     654     673 ..     644     674 .. 0.71
  10 ?   -3.5   0.0         5   1.8e+04      14      26 ..     688     699 ..     685     701 .. 0.76
  11 ?   -0.2   0.0      0.67   2.4e+03      16      31 .]     763     777 ..     759     777 .. 0.80
  12 ?    1.1   0.1      0.25   9.1e+02       8      24 ..     785     801 ..     781     805 .. 0.84
  13 !    8.5   0.0   0.00096       3.4       4      29 ..     937     961 ..     936     963 .. 0.92
  14 ?   -0.3   0.0      0.69   2.5e+03       7      24 ..     970     987 ..     967     991 .. 0.83
  15 ?    1.7   0.0      0.16   5.6e+02       6      30 ..    1033    1058 ..    1033    1058 .. 0.86
  16 ?    4.0   0.0     0.029     1e+02       4      29 ..    1156    1182 ..    1153    1184 .. 0.86
  17 ?   -3.4   0.0         5   1.8e+04      18      30 ..    1276    1287 ..    1272    1287 .. 0.83
  18 ?    3.9   0.0     0.031   1.1e+02       3      30 ..    1408    1438 ..    1406    1439 .. 0.82
  19 !    9.7   0.0    0.0004       1.4       4      30 ..    1447    1472 ..    1447    1473 .. 0.93
  20 ?   -3.3   0.0         5   1.8e+04       3      22 ..    1479    1501 ..    1478    1505 .. 0.71
  21 ?   -2.8   0.0       4.7   1.7e+04       6      29 ..    1512    1534 ..    1511    1535 .. 0.79
  22 ?   -2.0   0.0       2.5   8.8e+03       1      15 [.    1542    1556 ..    1542    1562 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.13
       Ank_3   5 pLhlAarsgnleivkfLlen 24 
                 +L lA++ + +++++ Ll +
  CCE26605.1 147 LLILAVEGNQYDMLQVLLPH 166
                 789**************984 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.012
       Ank_3   9 AarsgnleivkfLlenkga 27 
                 A++sgn++iv++Ll+ +ga
  CCE26605.1 179 AIHSGNVTIVELLLR-YGA 196
                 899************.886 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.1
       Ank_3   5 pLhlAarsgnle.ivkfLle 23 
                 +L +A+  ++ + +v++Ll+
  CCE26605.1 207 ALRQACADQSRChLVELLLR 226
                 67889999999878999998 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.28
       Ank_3   5 pLhlAarsgnleivkfLlenkgadv 29 
                 +L  A++ + ++++++L + +ga +
  CCE26605.1 335 ALESACETQFHDMAELLAR-YGASI 358
                 57789*******9999999.99987 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 4.8
       Ank_3  16 eivkfLlenkga 27 
                  i+++Ll+ kga
  CCE26605.1 411 IILRLLLR-KGA 421
                 4799***9.887 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.0042
       Ank_3  14 nle.ivkfLlenkgadvn 30 
                 + + +vk+Lle +gad+n
  CCE26605.1 561 RDDlLVKLLLE-HGADIN 577
                 44557******.9****9 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 3.9
       Ank_3   9 AarsgnleivkfLle 23 
                 ++r++++e++k Lle
  CCE26605.1 587 VIRQNDVELLKSLLE 601
                 579999********9 PP

  == domain 8  score: -3.5 bits;  conditional E-value: 5
       Ank_3  14 nleivkfLlenkg 26 
                 +++++ +Ll+  g
  CCE26605.1 624 RFNMISMLLD-AG 635
                 7889*****9.56 PP

  == domain 9  score: 1.1 bits;  conditional E-value: 0.25
       Ank_3  13 gnle..ivkfLlenkgadvn 30 
                  +++  ++++Ll++  ad+n
  CCE26605.1 654 RPIDmsLLDLLLQKGAADIN 673
                 4555226******9999999 PP

  == domain 10  score: -3.5 bits;  conditional E-value: 5
       Ank_3  14 nleivkfLlenkg 26 
                 +++++++L++ +g
  CCE26605.1 688 DPKVLDMLFR-HG 699
                 4569******.67 PP

  == domain 11  score: -0.2 bits;  conditional E-value: 0.67
       Ank_3  16 eivkfLlenkgadvna 31 
                 + +k Ll+  ga++na
  CCE26605.1 763 STLKTLLD-GGANPNA 777
                 4499****.9****96 PP

  == domain 12  score: 1.1 bits;  conditional E-value: 0.25
       Ank_3   8 lAarsgnleivkfLlen 24 
                 +A+ +++ +++++Lle 
  CCE26605.1 785 HAVTAADSKMIDMLLEA 801
                 79999999*******93 PP

  == domain 13  score: 8.5 bits;  conditional E-value: 0.00096
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 ++L +Aar g+ ++vk+L   +ga v
  CCE26605.1 937 SALLVAARDGDAKLVKMLMA-HGASV 961
                 79******************.89987 PP

  == domain 14  score: -0.3 bits;  conditional E-value: 0.69
       Ank_3   7 hlAarsgnleivkfLlen 24 
                  +A+r g+ e++  Lle+
  CCE26605.1 970 VEACRGGSAEVLGILLEQ 987
                 68**********999994 PP

  == domain 15  score: 1.7 bits;  conditional E-value: 0.16
       Ank_3    6 Lh.lAarsgnle.ivkfLlenkgadvn 30  
                  Lh +A+   + e +++ Ll   gad+n
  CCE26605.1 1033 LHsEACNGEDGEaVLRVLLT-AGADPN 1058
                  67678888888879******.9***98 PP

  == domain 16  score: 4.0 bits;  conditional E-value: 0.029
       Ank_3    4 tpLhlAarsgnle..ivkfLlenkgadv 29  
                   +L +A+  +++e  +v++Ll+ +ga +
  CCE26605.1 1156 KALNEAVNEDDPEerLVQLLLD-HGASP 1182
                  589999******7778******.89987 PP

  == domain 17  score: -3.4 bits;  conditional E-value: 5
       Ank_3   18 vkfLlenkgadvn 30  
                  vk+++  ++advn
  CCE26605.1 1276 VKLFVS-HHADVN 1287
                  899999.8***98 PP

  == domain 18  score: 3.9 bits;  conditional E-value: 0.031
       Ank_3    3 etpLhlAarsgnl....eivkfLlenkgadvn 30  
                  +t+L +A+ +       +++++Ll  +ga vn
  CCE26605.1 1408 MTLLSWAMAQPQKrvsnSVIELLLA-RGAKVN 1438
                  6999999999999555447999999.9***99 PP

  == domain 19  score: 9.7 bits;  conditional E-value: 0.0004
       Ank_3    4 tpLhlAarsgnleivkfLlenkgadvn 30  
                  tpL+lA++  ++++vk+Ll   ga+v+
  CCE26605.1 1447 TPLMLAIKTRRPDLVKLLLL-EGAEVD 1472
                  9******************9.799887 PP

  == domain 20  score: -3.3 bits;  conditional E-value: 5
       Ank_3    3 etpLhlAarsgnl..e.ivkfLl 22  
                  +tpL +A + g    e +v +Ll
  CCE26605.1 1479 RTPLSMATSIGGDvsEqMVSLLL 1501
                  79999998877765534777776 PP

  == domain 21  score: -2.8 bits;  conditional E-value: 4.7
       Ank_3    6 LhlAarsgnleivkfLlenkgadv 29  
                  L  Aar  nl++vk L+   g d+
  CCE26605.1 1512 LQNAARDLNLPVVKVLVG-SGHDP 1534
                  67899999999*****98.56665 PP

  == domain 22  score: -2.0 bits;  conditional E-value: 2.5
       Ank_3    1 nGetpLhlAarsgnl 15  
                  +G+++L + +++g+ 
  CCE26605.1 1542 EGRSALAELCLHGSD 1556
                  599********9986 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.066   2.4e+02      38      55 .]     147     164 ..     134     164 .. 0.87
   2 ?    4.6   0.1     0.014        51       5      55 .]     148     192 ..     145     192 .. 0.75
   3 ?    1.3   0.1      0.16   5.6e+02       8      54 ..     179     224 ..     172     225 .. 0.68
   4 ?   -2.2   0.0       1.9   6.8e+03       6      22 ..     431     447 ..     429     457 .. 0.83
   5 !    7.4   0.1    0.0019         7       4      28 ..     549     577 ..     544     579 .. 0.76
   6 ?   -2.2   0.0       1.9   6.8e+03      11      23 ..     590     602 ..     587     606 .. 0.82
   7 ?    0.3   0.0      0.31   1.1e+03      14      33 ..     658     677 ..     647     680 .. 0.85
   8 ?    5.0   0.0     0.011        38      11      55 .]     759     799 ..     751     799 .. 0.89
   9 ?   -1.4   0.0       1.1   3.9e+03      11      43 ..     824     851 ..     816     853 .. 0.74
  10 ?   -1.9   0.0       1.6   5.7e+03       7      25 ..     878     896 ..     872     905 .. 0.73
  11 !    5.8   0.0    0.0061        22       3      54 ..     937     984 ..     935     985 .. 0.84
  12 ?    3.2   0.0     0.038   1.4e+02      15      51 ..    1045    1080 ..    1036    1081 .. 0.87
  13 ?    4.4   0.0     0.017        60       5      28 ..    1154    1183 ..    1150    1198 .. 0.79
  14 ?   -1.8   0.0       1.5   5.3e+03      17      48 ..    1276    1303 ..    1273    1309 .. 0.77
  15 !   16.8   0.0   2.2e-06    0.0078       1      55 []    1407    1465 ..    1407    1465 .. 0.89
  16 !   13.0   0.0   3.2e-05      0.12       1      55 []    1445    1501 ..    1445    1501 .. 0.91
  17 ?    1.1   0.0      0.19   6.7e+02       5      39 ..    1512    1547 ..    1509    1561 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.066
       Ank_4  38 alhiAakrgnveilklLl 55 
                 +l+ A+ ++++++l+ Ll
  CCE26605.1 147 LLILAVEGNQYDMLQVLL 164
                 699*************98 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.014
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 L  a++ +++++++ Ll       ++d+ s + al  A+  gnv i++lLl
  CCE26605.1 148 LILAVEGNQYDMLQVLLP------HVDSHSINQALAPAIHSGNVTIVELLL 192
                 555666778888888884......577888888888888888888888886 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.16
       Ank_4   8 aaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg.nveilklL 54 
                 a++sg++ +v+lLl +ga    q  ++ + al  A+    + + ++lL
  CCE26605.1 179 AIHSGNVTIVELLLRYGAC-ASQ-TSELQEALRQACADQsRCHLVELL 224
                 7779999999999988885.344.466777777777555456666666 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.9
       Ank_4   6 hyaaisgrlelvrlLle 22 
                   aa++g+le+v  Ll+
  CCE26605.1 431 IDAAEAGDLESVSVLLS 447
                 56999999999999984 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.0019
       Ank_4   4 aLhyaai...sgrlel.vrlLlekgadin 28 
                 aLh a+     gr +l v+lLle+gadin
  CCE26605.1 549 ALHDAIGkdaTGRDDLlVKLLLEHGADIN 577
                 3455555888888888799*********9 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 1.9
       Ank_4  11 sgrlelvrlLlek 23 
                 ++++el+++Llek
  CCE26605.1 590 QNDVELLKSLLEK 602
                 7899*******96 PP

  == domain 7  score: 0.3 bits;  conditional E-value: 0.31
       Ank_4  14 lelvrlLlekg.adinaqdnr 33 
                 + l++lLl+kg adin   ++
  CCE26605.1 658 MSLLDLLLQKGaADINLL-DG 677
                 6789******8799*987.65 PP

  == domain 8  score: 5.0 bits;  conditional E-value: 0.011
       Ank_4  11 sgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 + +l +++ Ll+ ga++na        al +A+   + +++ +Ll
  CCE26605.1 759 DANLSTLKTLLDGGANPNAF----KAAALCHAVTAADSKMIDMLL 799
                 6799*******99***9988....666**************9997 PP

  == domain 9  score: -1.4 bits;  conditional E-value: 1.1
       Ank_4  11 sgrlelvrlLlekgadinaqdnrsGetalhiAa 43 
                  +rl l++ L+e ga + +      + al++A+
  CCE26605.1 824 RQRLALAKKLVEAGAHPLE-----INRALQHAI 851
                 5788999999999999555.....455888887 PP

  == domain 10  score: -1.9 bits;  conditional E-value: 1.6
       Ank_4   7 yaaisgrlelvrlLlekga 25 
                   ++++ +e+++lLl+k +
  CCE26605.1 878 LSVSMESTETLALLLAKSQ 896
                 4456888999999998754 PP

  == domain 11  score: 5.8 bits;  conditional E-value: 0.0061
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +aL  aa +g+ +lv+ L ++ga++    n+    a+  A+++g+ e+l  L
  CCE26605.1 937 SALLVAARDGDAKLVKMLMAHGASVATN-NG---QAIVEACRGGSAEVLGIL 984
                 7999********************9876.44...888888888888877655 PP

  == domain 12  score: 3.2 bits;  conditional E-value: 0.038
       Ank_4   15 elvrlLlekgadinaqdnrsGetalhiAakrgnveil 51  
                   ++r Ll  gad+n+ dn+++  a  + a++g+++ l
  CCE26605.1 1045 AVLRVLLTAGADPNY-DNGECVVAATRSASIGSLKLL 1080
                  6899***99******.9****9999999999998765 PP

  == domain 13  score: 4.4 bits;  conditional E-value: 0.017
       Ank_4    5 Lhyaai......sgrlelvrlLlekgadin 28  
                  Lh+a +      +  ++lv+lLl++ga++ 
  CCE26605.1 1154 LHKALNeavnedDPEERLVQLLLDHGASPT 1183
                  6777777777889999***********964 PP

  == domain 14  score: -1.8 bits;  conditional E-value: 1.5
       Ank_4   17 vrlLlekgadinaqdnrsGetalhiAakrgnv 48  
                  v+l +++ ad+n+    ++  +l  Aa++ +v
  CCE26605.1 1276 VKLFVSHHADVNY----NHGEPLREAASNADV 1303
                  899999****877....477777777777665 PP

  == domain 15  score: 16.8 bits;  conditional E-value: 2.2e-06
       Ank_4    1 eltaLhyaai..sgrlel..vrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55  
                  e+t+L +a++  + r+ +  ++lLl++ga +n  ++ s+ t+l  A+k+ +++ +klLl
  CCE26605.1 1407 EMTLLSWAMAqpQKRVSNsvIELLLARGAKVNVESSLSHTTPLMLAIKTRRPDLVKLLL 1465
                  68999*****6655555588************9999**********************8 PP

  == domain 16  score: 13.0 bits;  conditional E-value: 3.2e-05
       Ank_4    1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg.n..veilklLl 55  
                  ++t+L  a++  r +lv+lLl  ga+++   +   +t+l +A ++g +   +++ lLl
  CCE26605.1 1445 HTTPLMLAIKTRRPDLVKLLLLEGAEVDVL-DYKERTPLSMATSIGgDvsEQMVSLLL 1501
                  5899999**************99******9.************999855599999887 PP

  == domain 17  score: 1.1 bits;  conditional E-value: 0.19
       Ank_4    5 LhyaaisgrlelvrlLlekgadinaqdn.rsGetal 39  
                  L +aa + +l++v+ L+ +g d++  ++  +G++al
  CCE26605.1 1512 LQNAARDLNLPVVKVLVGSGHDPDFPSPlHEGRSAL 1547
                  667888889********9998876554446777776 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.012        43      18      36 ..     146     164 ..     131     170 .. 0.85
   2 ?    2.3   0.0     0.062   2.2e+02      19      40 ..     175     196 ..     166     204 .. 0.85
   3 ?   -3.7   0.0       4.9   1.8e+04      19      42 ..     335     358 ..     333     364 .. 0.80
   4 ?   -0.4   0.0      0.45   1.6e+03      12      36 ..     426     446 ..     416     449 .. 0.78
   5 ?    1.4   0.0      0.12   4.2e+02      27      48 ..     560     582 ..     545     585 .. 0.70
   6 ?   -3.4   0.1       3.8   1.4e+04       2      37 ..     769     800 ..     768     805 .. 0.68
   7 !    4.9   0.1    0.0098        35      16      43 ..     935     962 ..     925     968 .. 0.80
   8 ?   -0.9   0.0      0.63   2.2e+03      19      39 ..     968     986 ..     957     992 .. 0.75
   9 ?   -2.0   0.0       1.4     5e+03      31      48 ..    1046    1063 ..    1045    1064 .. 0.76
  10 ?   -1.1   0.0      0.71   2.5e+03       5      36 ..    1283    1310 ..    1280    1318 .. 0.82
  11 !   20.3   0.0   1.4e-07    0.0005       1      56 []    1430    1485 ..    1421    1485 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.012
       Ank_5  18 tpLhvAakygaadvvrlLl 36 
                 + L++A++++  d++++Ll
  CCE26605.1 146 NLLILAVEGNQYDMLQVLL 164
                 89****************9 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.062
       Ank_5  19 pLhvAakygaadvvrlLlarga 40 
                 +L  A++ g+ ++v+lLl +ga
  CCE26605.1 175 ALAPAIHSGNVTIVELLLRYGA 196
                 7889**************7765 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 4.9
       Ank_5  19 pLhvAakygaadvvrlLlargadl 42 
                 +L  A++ +  d+++lL  +ga++
  CCE26605.1 335 ALESACETQFHDMAELLARYGASI 358
                 788899999999999999888876 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.45
       Ank_5  12 ldgggntpLhvAakygaadvvrlLl 36 
                 ld      L+ Aa++g ++ v +Ll
  CCE26605.1 426 LD----DMLIDAAEAGDLESVSVLL 446
                 45....789************9998 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.12
       Ank_5  27 gaadvvrlLl.argadlnltdsr 48 
                 g+ d++ +Ll ++gad+n   ++
  CCE26605.1 560 GRDDLLVKLLlEHGADINFDQGS 582
                 55566666666*****9966555 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 3.8
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLla 37 
                 l+ g a++n+    +  +L++A+ +  + ++ +Ll+
  CCE26605.1 769 LDGG-ANPNAF---KAAALCHAVTAADSKMIDMLLE 800
                 5555.666664...4468889999988888888883 PP

  == domain 7  score: 4.9 bits;  conditional E-value: 0.0098
       Ank_5  16 gntpLhvAakygaadvvrlLlargadln 43 
                   ++L vAa+ g a +v++L+a+ga+  
  CCE26605.1 935 ASSALLVAARDGDAKLVKMLMAHGASVA 962
                 348999******************9865 PP

  == domain 8  score: -0.9 bits;  conditional E-value: 0.63
       Ank_5  19 pLhvAakygaadvvrlLlarg 39 
                 ++  A+++g+a+v+ +Ll  +
  CCE26605.1 968 AIVEACRGGSAEVLGILL--E 986
                 66669********99999..3 PP

  == domain 9  score: -2.0 bits;  conditional E-value: 1.4
       Ank_5   31 vvrlLlargadlnltdsr 48  
                  v+r+Ll  gad+n  +++
  CCE26605.1 1046 VLRVLLTAGADPNYDNGE 1063
                  678888888988877765 PP

  == domain 10  score: -1.1 bits;  conditional E-value: 0.71
       Ank_5    5 gpadvnrldgggntpLhvAakygaadvvrlLl 36  
                    advn++ g   +pL  Aa++   ++ r+Ll
  CCE26605.1 1283 H-ADVNYNHG---EPLREAASNADVSWTRELL 1310
                  4.88988876...89999*************9 PP

  == domain 11  score: 20.3 bits;  conditional E-value: 1.4e-07
       Ank_5    1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56  
                  Ll++g  ++v  +  + +tpL++A+k +++d+v+lLl +ga  ++ d   +t+l +A
  CCE26605.1 1430 LLARGaKVNVESSLSH-TTPLMLAIKTRRPDLVKLLLLEGAEVDVLDYKERTPLSMA 1485
                  6677766666555444.4*******************99999999999889999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.51
# Mc/sec: 11014.02
//
Query:       CCE26606.1  [L=870]
Description: related to proliferation associated SNF2-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-66  222.7   0.5    1.1e-65  221.7   0.5    1.4  1  SNF2_N         SNF2 family N-terminal domain
    2.3e-21   76.2   0.0    2.9e-20   72.7   0.0    2.7  3  Helicase_C     Helicase conserved C-terminal domain
    1.4e-09   38.2   0.2    7.2e-09   35.9   0.0    2.3  3  ResIII         Type III restriction enzyme, res subunit
    1.7e-06   27.5   0.0    3.9e-06   26.3   0.0    1.6  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
    0.00012   21.9   0.0     0.0004   20.2   0.0    1.9  2  DEAD           DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.018   14.2   0.0      0.018   14.2   0.0    2.8  3  HDA2-3         Class II histone deacetylase complex subunits 
      0.073   13.3   0.6       0.41   10.9   0.1    2.6  2  AAA_22         AAA domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.7   0.5   4.3e-69   1.1e-65      48     324 ..     125     401 ..      95     421 .. 0.87

  Alignments for each domain:
  == domain 1  score: 221.7 bits;  conditional E-value: 4.3e-69
                 .HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH.....------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxx RF
      SNF2_N  48 saeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkk.....mkkkntk 141
                  +e  ++   G+LaDemGLGKTvq++ali+ +r+          +++ +gp+Liv+P s+l +W++e++++++s  + ++++++ ++     +k +++ 
  CCE26606.1 125 MFEICSQGMSGVLADEMGLGKTVQTIALIALLRE----------QENYLGPHLIVAPLSTLSNWMDEFHKWTPSIPVVMYHGNQAQReeifqTKMMRNL 213
                 5677789999********************3322..........345689*************************997777777766888853334344 PP

                 ----------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 142 vapklladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqt 240
                 +  +  +++ vv+t+Y+++ r++      + l++++w+++++DEgh++kn ++k+ + ++++s+  r+++tGTP+qn+l++l++Ll+fL +++f++++ 
  CCE26606.1 214 TGGRPSTKFPVVCTSYEMVLRDQ------HNLSRIQWEFIIIDEGHRMKNADAKLFQQLRQFSSATRLLITGTPLQNNLKELWSLLHFLLPNIFTDWEA 306
                 556667899***********999......9********************************************************************* PP

                 HHHHTHHHHH............HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHH CS
                 xxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 241 fdkllqrpie............aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalk 324
                 f+++++                + +++ +++++ +lq+l+lrr+k+dv ++lP+k e+++f +++k++  +Yn + +++  +++a l ++   +++
  CCE26606.1 307 FESWFDFSDLqdeksteefiadQMKQDLVKKIHLILQPLLLRRIKQDVAAYLPKKREYVLFAPMTKEQTDLYN-VFTDKEVDTRAYLEQKVINQIN 401
                 ****98765568999******999999**********************************************.8888888888877777655555 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.52   1.3e+03      32      60 ..     179     206 ..     149     215 .. 0.65
   2 ?   -3.8   0.0       6.5   1.7e+04      27      49 ..     384     408 ..     365     421 .. 0.56
   3 !   72.7   0.0   1.1e-23   2.9e-20       2     111 .]     631     744 ..     630     744 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.52
                 HHHHHHHT...TSTEEEESTTSTHHHHHHHHH CS
  Helicase_C  32 vklllekk...gikvavlhgelpqnereeile 60 
                 ++ ++  k   +i v+++hg  +q +reei++
  CCE26606.1 179 MDEFH--KwtpSIPVVMYHG--NQAQREEIFQ 206
                 33332..1235899******..8999999986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.5
                 HHHHHHHHHHHHT...TSTEEEESTT CS
  Helicase_C  27 drlekvklllekk...gikvavlhge 49 
                 ++++   +l e+k   +i++av  g+
  CCE26606.1 384 KEVDTRAYL-EQKvinQINSAVPSGQ 408
                 344433444.4444656777776664 PP

  == domain 3  score: 72.7 bits;  conditional E-value: 1.1e-23
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprn 96 
                 k++ l +ll kl ++g+k+l+f++++++l+   ++ +e +g  v++++g+  q++r++ +++fn + +++ +L++t+++++Gi++ ++++Vi fd ++n
  CCE26606.1 631 KMLLLDRLLtKLFQNGHKVLLFSQFKTQLDIlEDYARELRGWLVCRIDGSVAQDDRRQQIQDFNtDPNYNlFLLSTRAGGQGINLASADTVILFDSDFN 729
                 5666777878999****************88888888888************************8899999**************************** PP

                 HHHHHHHHTTSSSTT CS
  Helicase_C  97 vtsyiqriGRtgRag 111
                 +++  q+ +R++R+g
  CCE26606.1 730 PQQDLQAQDRCHRIG 744
                 *************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3       3.1   7.8e+03      98     121 ..      27      50 ..       8      67 .. 0.48
   2 !   35.9   0.0   2.8e-12   7.2e-09       4     169 ..     114     281 ..     111     283 .. 0.78
   3 ?   -2.8   0.0       2.2   5.6e+03      34      64 ..     628     656 ..     625     694 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.1
                 ......-SEEEEEHHHHHHTH... CS
      ResIII  98 ekdstnkkilvttiqsldadseee 121
                 e+++t+ +  ++ +q+  ++++ e
  CCE26606.1  27 ENRRTDQDHKLSATQKRIKKRKAE 50 
                 333444444444444433333232 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 2.8e-12
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG...........GEEEESSS-B- CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke.......igkkvsgdkkk 95 
                 +r+yQ e ++ + e     +   g+++ + G GKT+  ++li+ l++++++    ++v  +s l+ +++ef k++++           + +++      
  CCE26606.1 114 MRDYQLEGLTWMFEIC--SQGMSGVLADEMGLGKTVQTIALIALLREQENYLGPHLIVAPLSTLSNWMDEFHKWTPSIPVVmyhgnqaQREEI------ 204
                 6788888877776555..57788999999*****************99877755566666777789*****9998876433443333322222...... PP

                 -................-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...TTTHHHHHT---SEEEEEESS- CS
      ResIII  96 a.........kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..kswreilekfkeavllglTATp 169
                 +           + st+  ++ t+++++ +d+       + l+r + ++iiiDE Hr++ +  k +++ l++f++a++l +T+Tp
  CCE26606.1 205 FqtkmmrnltGGRPSTKFPVVCTSYEMVLRDQ-------HNLSRIQWEFIIIDEGHRMKNAdaKLFQQ-LRQFSSATRLLITGTP 281
                 13555557777789999999********9999.......999****************9975457888.899999*********9 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.2
                 TSTHHHHHHHHHHHH-S.....-EEEEESSH CS
      ResIII  34 GtGKTlvaaklierllkkgkeekflflvprk 64 
                  +GK l++ +l  +l+++g+  k+l++ + k
  CCE26606.1 628 SSGKMLLLDRLLTKLFQNGH--KVLLFSQFK 656
                 58999999999999999988..888876555 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.5e-09   3.9e-06      16     139 ..     602     732 ..     595     764 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.5e-09
  ERCC3_RAD25_C  16 WcpmtaefykeylkakskkkkllyvmnpnkfracefLikyhekrgDkiivfsD...nvfaLkeyakklkkpy...iyGetseaerlkilqkfkknp 105
                     c+ + +fy+ + ++++      +++ + k+  ++ L++   + g k+++fs    ++  L++ya++l+  +   i G++++ +r + +q+f+++p
     CCE26606.1 602 VCNSPHNFYNPWATSTNVPVDETIITSSGKMLLLDRLLTKLFQNGHKVLLFSQfktQLDILEDYARELRGWLvcrIDGSVAQDDRRQQIQDFNTDP 697
                    599999*******9999999999999999**********************97443677899******987622267******************* PP

  ERCC3_RAD25_C 106 kvntifls.kvgDtsiDlPeanvliqisshfgsrr 139
                    ++n  +ls + g + i+l +a  +i  +s+f  ++
     CCE26606.1 698 NYNLFLLStRAGGQGINLASADTVILFDSDFNPQQ 732
                    ******9956899************9999987643 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.6e-07    0.0004      13     149 ..     131     269 ..     116     289 .. 0.68
   2 ?   -3.3   0.0       2.6   6.6e+03     128     156 ..     563     594 ..     563     603 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.6e-07
                 TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrlddl 111
                 +g + ++a e G GKT    i++++ + e +++     liv+P+  L +  ++++ k++    + v++  g++a+r+++ + +   +++ g p+  + +
  CCE26606.1 131 QGMSGVLADEMGLGKTVQ-TIALIALLRE-QENYLGPHLIVAPLSTLSN-WMDEFHKWTPS--IPVVMYHGNQAQREEIFQTKMMRNLTGGRPSTKFPV 224
                 66677888999*****87.6677766655.555555789********76.67888888887..567777899999999999954455555555555444 PP

                 H.........HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHS CS
                 x.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 112 l.........stgklnlsqvrflVlDEadrlldqgfsdfinrilnql 149
                 +         ++++l+  q +f+++DE +r+ + +   ++ + l+q+
  CCE26606.1 225 VctsyemvlrDQHNLSRIQWEFIIIDEGHRMKNAD--AKLFQQLRQF 269
                 4455555543555666666799*********9983..2333333444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.6
                 ETHHHHHHT...TTHHHHHHHHHHSHHHCTTS CS
                 xxxxxxxxx...xxxxxxxxxxxxxxxxxxxx RF
        DEAD 128 DEadrlldq...gfsdfinrilnqlpqitcdg 156
                 DEad+l +    ++ ++++   +ql+q++   
  CCE26606.1 563 DEADELRSPeeiERAETLELAKKQLAQKKLGN 594
                 99999998855666666666677776665554 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.7       1.8   4.7e+03     149     161 ..      33      44 ..       7      79 .. 0.49
   2 ?   -2.4   0.0      0.82   2.1e+03       4      22 ..     362     380 ..     360     388 .. 0.87
   3 ?   14.2   0.0   7.1e-06     0.018      82     258 ..     621     776 ..     568     783 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.8
                 S---S-....... CS
      HDA2-3 149 ekkkkskdtkkns 161
                 + +k s +t+k  
  CCE26606.1  33 QDHKLS-ATQKRI 44 
                 112222.222221 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.82
                 SEEEEEE---HHHHHHHHH CS
      HDA2-3   4 gdyylPtpltelqkelteq 22 
                  +y l  p+t+ q +l++ 
  CCE26606.1 362 REYVLFAPMTKEQTDLYNV 380
                 6899************975 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 7.1e-06
                 HHHHHHHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTS.SSEEEESSS--S--S---S-..................-SEEEEE CS
      HDA2-3  82 lpeklaetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGk.klkikrysgeklydekkkkskdtkknsrktkeklkkkihsltihl 179
                 + e ++++SgK+ +l +l+  + ++      +vl+ ++ k +ld++E +     +  + r +g   +d+ +++            +  + +      ++
  CCE26606.1 621 VDETIITSSGKMLLLDRLLTKLFQNG----HKVLLFSQFKTQLDILEDYARELrGWLVCRIDGSVAQDDRRQQI-----------Q--DFNTDPNYNLF 702
                 568899******************99....99****************98765589999***999999999888...........1..22222334456 PP

                 EESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---.-------EEEEEETTSHHHHHHHHTS-TT-HHHHHH CS
      HDA2-3 180 lsttrqltkdksllenikfdliiafDssvdtsspsveslrtqn.rkknklpiirlvpinSieHvkLcfkkdedepeylek 258
                 l +tr   +     +   +d +i fDs+++++++   + r ++  + ++++++rl +  ++e   L+     d +++lek
  CCE26606.1 703 LLSTRAGGQ---GINLASADTVILFDSDFNPQQDLQAQDRCHRiGQTRPVIVYRLATRGTVEETLLMSA---DAKRRLEK 776
                 666666544...4667778*************9988888876624455699************999988...44444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00016      0.41      80     131 ..     233     281 ..     130     285 .. 0.68
   2 ?   -2.2   0.1       1.8   4.5e+03      98     113 ..     563     584 ..     563     593 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
      AAA_22  80 ealeqalraravielliiDEaqhlr..seealeeLrsllnlsrkgvqliLvGtp 131
                  + +++l++ +  e++iiDE +++    ++++++Lr+++      ++l++ Gtp
  CCE26606.1 233 LRDQHNLSRIQW-EFIIIDEGHRMKnaDAKLFQQLRQFSS----ATRLLITGTP 281
                 333555555566.9**********6544999999988887....7777777776 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.8
      AAA_22  98 DEaqhlr...s...eealeeLr 113
                 DEa+ lr   +   +e le  +
  CCE26606.1 563 DEADELRspeEierAETLELAK 584
                 9*****8543133455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1470  (0.0819901); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 5597.67
//
Query:       CCE26607.1  [L=399]
Description: related to tRNA binding protein ARC1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-22   78.6   0.1    8.8e-22   77.0   0.1    1.9  1  tRNA_bind      Putative tRNA binding domain
    9.8e-05   22.3   0.0    0.00018   21.5   0.0    1.4  1  GST_C_2        Glutathione S-transferase, C-terminal domain
    0.00023   21.3   0.3    0.00098   19.3   0.0    2.2  2  GST_C          Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.1   1.5e-25   8.8e-22       1      95 [.     211     325 ..     211     326 .. 0.95

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 1.5e-25
                 EEEEEEEEEEEETTSSTEEEEEEEESSSS............EEEEEESCTTTSTHHHHTTEEEEEETTSESEEETTEEESSEE-EEEC........CES CS
   tRNA_bind   1 lrvGkvleaeehpnadkLlvlkvdvGeee............prqivsgaknvyepeelvakkvvvvanlkpkklrGveSeGMilsaee........lde 79 
                 lrvG++l+a  hp+ad+L+v ++ vG+ +             r+++sg++ + + e+++++kv+vv+nlkp k+rG++S +M+l+a+          d+
  CCE26607.1 211 LRVGHILKAIHHPDADSLYVSTIAVGDPAgnedyveyegqvCRTVCSGLNGHIPLEQMQGRKVIVVCNLKPVKMRGIKSCAMVLAASPkvkagevdHDK 309
                 79************************9888889999999999**********************************************99999988888 PP

                 SCEEEEEESST--TTC CS
   tRNA_bind  80 kevgilelpadveaGe 95 
                 + v+++++p+ ++aG+
  CCE26607.1 310 GPVELVSPPEGAKAGD 325
                 889**********997 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     3e-08   0.00018      14      68 ..      35      91 ..      33      92 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3e-08
                CHHHCTTT---SS.CTTCS--HHHHHHHHHHHHH.HHHHHS-.---TT-HHHHHHHH CS
     GST_C_2 14 aldaleahLadspflfGdqptlaDialapflvrl.raagpgf.direaypnlraWle 68
                 l++l++hLa ++ l+G++p+ aD+a + +l  +     p++ + ++++p+++++l+
  CCE26607.1 35 ILETLNNHLASRTTLLGSKPSKADVAIYETLSPVvAKWSPDErTGEKGHPHIVRHLD 91
                79**************************99998853333333388899999999986 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.6e-07   0.00098      23      87 ..      24      91 ..      14      96 .. 0.89
   2 ?   -1.3   0.5      0.43   2.6e+03      13      36 ..     118     141 ..     109     193 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.6e-07
                HHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHH.HHHHHTTTTT..TTTSHHHHHHHH CS
       GST_C 23 lvdealekvaevlsaleeelkkqdylvGdkltlADialvpiln.wlqrlglafg..qekfpnlkawle 87
                +++++++ +a +l+ l+++l+ ++ l G+k++ AD+a+++ l  ++++  ++    ++++p++ ++l+
  CCE26607.1 24 ERLKSSDDKASILETLNNHLASRTTLLGSKPSKADVAIYETLSpVVAKWSPDERtgEKGHPHIVRHLD 91
                56788899999*******************************99888888888787999999999876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.43
                 HSTTHHHHHHHHHHHHHHHHHHHH CS
       GST_C  13 yvkaeekkeelvdealekvaevls 36 
                 yvk+    +++++ +++++a++ +
  CCE26607.1 118 YVKPPVDAKAEKERLKKEKAAAAA 141
                 555553344444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       975  (0.0543812); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2892.27
//
Query:       CCE26608.1  [L=1300]
Description: probable DNA-directed RNA polymerase,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.7e-182  606.2   0.0   3.8e-182  605.7   0.0    1.2  1  RNA_pol      DNA-dependent RNA polymerase
      6e-93  311.9   1.9      6e-93  311.9   1.9    1.6  2  RPOL_N       DNA-directed RNA polymerase N-terminal


Domain annotation for each model (and alignments):
>> RNA_pol  DNA-dependent RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  605.7   0.0  4.3e-186  3.8e-182       1     414 []     700    1300 .]     700    1300 .] 0.98

  Alignments for each domain:
  == domain 1  score: 605.7 bits;  conditional E-value: 4.3e-186
                  EE-HHHHHHHHHHHHHHHTT-TSSTHHHHHHHHHHTHHHHHHHHHTTT...TGGGGSSSHHHHHHHHHHHHHHHH..HGTTSEE-S-EEEEBSTHHH CS
     RNA_pol    1 kpLgeeglrwLkihlanlfGldkaslkervefveenleeildsaenplegkrwwlkaedpwqaLaacfelkkalesedpeeyvshlpvhqDGscnGL 97  
                  k+Lge+glrwLkihlanl+Gl k s++er++f+++n+ +i++sa+npl+g+rwwl+aedpwq+Laacf+lk+a e++dp+++vs+lp+hqDG+cnGL
  CCE26608.1  700 KELGERGLRWLKIHLANLYGLGKSSFDEREAFANDNMPKIIESATNPLNGSRWWLEAEDPWQCLAACFDLKAASELPDPTKHVSQLPIHQDGTCNGL 796 
                  79*********************************************************************************************** PP

                  HHHHHHTT-HHHHHHTTSSSSSS---HHHHHHHHHHHHHHHHE.E.STHHHHHHHT.--HHHHHHHHHHGGGT-THHHHHHHHHHHTHHH......T CS
     RNA_pol   98 QHYaaLgrDeegakqVNLvpsdrpqDvYsavaelvkekvekdaek.geelakllkgkikRkvvKqtvmtnvYgvtfvgareqiekqlkel.eeveee 192 
                  QHYaaLg+D++gakqVNL+p++rp+DvYsava+lv++++++da++ ++++a +l+gki+RkvvKqtvmtnvYgvtf ga++q+ kq+++l  e+++e
  CCE26608.1  797 QHYAALGGDTWGAKQVNLEPGERPADVYSAVADLVNDAINQDARDgKNKTAAILQGKINRKVVKQTVMTNVYGVTFSGAKNQVCKQIDALyPELSKE 893 
                  *******************************************6626678****************************************8333332 PP

                  T...HHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHS-EB-T.......................................-.S--EEEEE CS
     RNA_pol  193 e...llkaasylaklilksleelfkgakeiqkwLkelakliakslkae.......................................klkstvvWtt 247 
                  +    + +++y+ak+i+k+l ++f+ga++iq+wL+e++ +++++l+a+                                       +++stvvWtt
  CCE26608.1  894 TginHMVLSTYIAKHIFKALASMFRGAHDIQYWLGEVGGRVCRALTASqiqrlaedhasakteaggevrktkkkaktsangfaaftdHFRSTVVWTT 990 
                  23338899*************************************9999********************************99987559******** PP

                  TTSEEEEE--EEESEEEEESSSTTE--EEEEESCEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--EEESSSEEEE-HHHHHHHHHHHHHHH CS
     RNA_pol  248 plglpvvqpYrkkkkkqvktalqsvvlsksekkdpvnkrkqkqafpPNfiHslDathmlltaleckeegltfaavHDsfwthaadvdelnkilreaf 344 
                  pl++pvvqpYrk++ k+v+t+lq++++  +e++dpvn+rkq+q+fpPNfiHslDa+hmll+al c++++l faavHDsfwthaadvd++n ilreaf
  CCE26608.1  991 PLRMPVVQPYRKSQVKEVRTCLQTIAYPVDEQTDPVNRRKQLQGFPPNFIHSLDASHMLLSALDCDKKNLVFAAVHDSFWTHAADVDTMNGILREAF 1087
                  ************************************************************************************************* PP

                  HHHHHHTHHHHHHHHHHTTSTGGGSS....................................................................... CS
     RNA_pol  345 vklhsedilerlaeefkerykkslllakvkkksevakkika........................................................ 385 
                  +++h+ed+++rla+e+++r+k+s +l  v+ +s+v kkik+                                                        
  CCE26608.1 1088 IRIHEEDVIGRLAQEIEARHKGSIYLGYVDPNSAVGKKIKElrkkgnfsarqelflehkrntlrlsgkpedleeakkiitpaslcedmaqavddvse 1184
                  ****************************************9******************************************************** PP

                  ............................................................................................SS--- CS
     RNA_pol  386 .......................................................................................vlvplelpev 395 
                                                                                                         +++pl+lp+v
  CCE26608.1 1185 edmdgldldgmpskaadsadsmdvesdaesmdisdqmlsvpsgedgdpasssdnslypedeyddfetriapvsakaakqkpkatrlpLWLPLTLPPV 1281
                  ************************************************************************************************* PP

                  ----S-SGGGGGG-TTTB. CS
     RNA_pol  396 PkkGeldveevkeskYffs 414 
                  PkkG++dve++++s+Yffs
  CCE26608.1 1282 PKKGDFDVERLRHSQYFFS 1300
                  ******************7 PP

>> RPOL_N  DNA-directed RNA polymerase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.9   1.9   6.7e-97     6e-93       1     336 []     249     576 ..     249     576 .. 0.88
   2 ?   -3.3   0.0      0.49   4.4e+03     120     162 ..     929     971 ..     922     981 .. 0.75

  Alignments for each domain:
  == domain 1  score: 311.9 bits;  conditional E-value: 6.7e-97
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGTHHHHH....HHHHHHHHHHHHHHTSSSS--HHHH....................HTTTS-HHHHHHHH CS
      RPOL_N   1 rQlrlEedsveaaverwreeaeelkkrglatslssk....slnallweWyealeeaikeelekveksekkekkteedkdraeygpfLrllppeklAait 95 
                 +Ql+lE++s+  ++erwr + + + krg ++ l+ +    sl++ ++ W  a+e++ +eel+ +++se+k++k++ed dr+ ygp L++ +p++lAait
  CCE26608.1 249 IQLELERESITCSIERWRDSRKGMLKRGVNPGLNPSsaqgSLSQNVAAWLHAFEQRWEEELALIQASEQKSHKSNEDYDRCLYGPLLQQADPSRLAAIT 347
                 5*****************************6665555566*********************************************************** PP

                 HHHHHHHHTSSS....-BHHHHHHHHHHHHHHHHHHHHHHHHHTTT.TTCHHHHHHHHSTSHHHH.HHHHHHHHHHHSHSSSTTT-TT........... CS
      RPOL_N  96 ilellsllstggvdkgvkvarlaisvGkaveeeyraeqlkkkekkkkkkkkkkekkvkklkkkkk.eakealakekeeekeelkrekaeklaeeeeeke 193
                 il++l+l + +gvd+g+ v+r+ +s++k ++e+++++q+++ +k++        k+  kl+ ++  ++++++a+ ++e+  +++ e+a++l     +++
  CCE26608.1 348 ILAVLNLGALKGVDRGLIVTRVTTSIAKLLQEDIHMQQQEETTKEN--------KRLHKLSFTSPtASTPTNAQPSTETIIDESPETADRL-----KEA 433
                 *****************************************55443........2333333222202222222223333333333333333.....335 PP

                 .SSSCHHHHHHHHHHHHHHHHHHSTSEEEEE.....................ESTT-EEEEEE-HHHHHHHHHHHHHTTS-TSS--BSS--B--SSSBS CS
      RPOL_N 194 eeeWpqeirakvGavLislLletakvpvtaedpetgekvteeqPAFyhsyqykkgkkvgviklnpelvkllkreplrdtltprhlPMlvpPkpWtsynk 292
                 + +W+ +i+a+vG++L+++Lletakv+ ta +p+t+e v++ qPAF+hs q +kgkkvgv+ +n  lv+++++ep++d++ ++hlPMlv+PkpWt++n+
  CCE26608.1 434 QGSWSMTIKAHVGSILLKILLETAKVKATARHPTTKELVSQLQPAFTHSQQCRKGKKVGVLYVNAVLVEKMQKEPIGDFI-AKHLPMLVEPKPWTKPNE 531
                 789*****************************************************************************.****************** PP

                 EBSSSSSSBSEE-SS.........HHHHHTB--HHHHHHHHHHHT CS
      RPOL_N 293 GGYllsptklmRtkdsk.eqkeylkaasergdldqvfkgLdvLGk 336
                 GG+lls+t l+R+k ++ eq+ y kaa ++g l+qvfkgLdvLG+
  CCE26608.1 532 GGFLLSKTALVRVKAGArEQRLYTKAALKHGCLEQVFKGLDVLGR 576
                 ********************************************6 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.49
                 HHHHHHHHHHHHHHHHHHHTTT.TTCHHHHHHHHSTSHHHHHH CS
      RPOL_N 120 svGkaveeeyraeqlkkkekkkkkkkkkkekkvkklkkkkkea 162
                 +vG +v +   a+q+++ ++++ + k+++  +v+k+kkk+k++
  CCE26608.1 929 EVGGRVCRALTASQIQRLAEDHASAKTEAGGEVRKTKKKAKTS 971
                 6777777778888888877777777777777888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.26s 00:00:01.14 Elapsed: 00:00:00.45
# Mc/sec: 8682.20
//
Query:       CCE26609.1  [L=317]
Description: uncharacterized protein CPUR_00078 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-09   37.1   0.0      1e-08   35.5   0.0    1.8  2  RsfS      Ribosomal silencing factor during starvation


Domain annotation for each model (and alignments):
>> RsfS  Ribosomal silencing factor during starvation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   5.8e-13     1e-08       8      99 .]      44     199 ..      37     199 .. 0.79
   2 ?   -2.2   0.0      0.33   5.9e+03      60      76 ..     237     251 ..     210     267 .. 0.69

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 5.8e-13
                 HHTT-EEEEEEE-TT....TTBSS-SEEEEEEESSHHHHHHHHHHHHHHHHHC....C---EEECBT................................ CS
        RsfS   8 edkkaedivvidlre....kkssladymviatakserhlkalaeelekklkee...aaealsveGln................................ 67 
                 ed    +i ++dlr+    ++ +++ +m++ata+serhl+++  +++++l ++        +++Gl                                 
  CCE26609.1  44 EDMGLDEIALLDLRDldppAALGPNLIMLFATARSERHLHVCSGRFVRWLGRNykvN---AKADGLIgagelktklrrlrkkaklmgtntmmvpdgdng 139
                 45555689999999999887789999************************7663330...344444223445555555666666666668888888888 PP

                 TS.SEEEE...........................E-S.SEEEEEEECCCHHHHHHHHHC CS
        RsfS  68 egddWvlv...........................dlg.dvvVhllteeaReeydLEelW 99 
                  +++Wv+v                            +g +vvV+ +te++R+++dL  lW
  CCE26609.1 140 ISTGWVCVnfstsdgsadetasfddsgrlsgfgtvSTGtTVVVQCMTESRRSQLDLIPLW 199
                 889******************************996666*****************8888 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.33
                 --EEECBTTS.SEEEEE CS
        RsfS  60 alsveGlnegddWvlvd 76 
                 ++++eG   +++W  ++
  CCE26609.1 237 EPEIEGA--AAQWANLQ 251
                 5778888..56887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2423.61
//
Query:       CCE26610.1  [L=397]
Description: related to exopolyphosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-35  121.5   0.0    4.9e-35  120.8   0.0    1.3  1  DHHA2     DHHA2 domain
    1.6e-09   37.9   0.0    2.7e-09   37.1   0.0    1.3  1  DHH       DHH family


Domain annotation for each model (and alignments):
>> DHHA2  DHHA2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   5.4e-39   4.9e-35       2     143 .]     236     384 ..     235     384 .. 0.90

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 5.4e-39
                 HHHHHHT-STTS-HHHHTTTTEEEEE.ETTEEEEEEEEEES-HHHHHT.THHH...HHHHHHHHH.HHT-SEEEEEEE.....ETTTEEEEEE....ST CS
       DHHA2   2 elkkaksdlsglsledllrrDyKeftgeggvkvgiasvpvslsewleekrkge...llaalekfaeerkldllvlmttfeeegdirrelllaal.daae 96 
                 ++ + ++d+s l ++d+lr+DyKe++ egg+++gi++v+  ++ +l ek++++   +l++l+++ae+r+ld++++mt++ + g++rr+lll+ l +   
  CCE26610.1 236 QIHAVQEDISALCFRDILRKDYKEWQ-EGGLTLGISCVVRGFE-FLLEKAGSDeqiFLRELSSWAENRSLDVAAVMTASYPGGQFRRQLLLWGLnA--- 329
                 5678899*******************.****************.7777787778***********9999*********99************9742... PP

                 T...HHHHHT---BT.EEET...................T---HHHHTHHHHHHH CS
       DHHA2  97 k...laealekasee.leLeewkeg....aewrrvykqgnvkasRKqvaPllrea 143
                 +   + + +++ s++ l+L +w +g     e+r ++ q  + asRKqvaPllrea
  CCE26610.1 330 RgirAVKTFRERSTQhLKLSPWHDGlldrDEERFAWVQLELAASRKQVAPLLREA 384
                 2334666688888855*************************************97 PP

>> DHH  DHH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   3.1e-13   2.7e-09       3      91 ..      31     177 ..      30     197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 3.1e-13
                 EEE-ECSSSHHHHHHHHHHHH................C..............................................ECS--TCGGCGCCHH CS
                 xxxxxxxxxxxxxxxxxxxxx................x..............................................xxxxxxxxxxxxxxx RF
         DHH   3 livghknpDtDsigSaialan................l..............................................lvDhneksqavegea 39 
                 ++vg ++ D+Ds++Sa+++a                 l                                              lvDhn+++  v +  
  CCE26610.1  31 FVVGNESADLDSLCSAVVYAFirtnsapyalhiplanLpradlamrtemtavlqhaaltpeqlltltelpdprqlqphqdthwvLVDHNSPTSPVRE-- 127
                 689******************555555555555555505555555555555555555555555555555555555555566665***********88.. PP

                 CCCSEEEEEEE-S---SS---SS--EEEE-SSS-HHHHHHHHHHHTT----H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         DHH  40 keeaedviiiDHHrlgeefetlapilflnepvgstaeivaelleekkeeisk 91 
                    ++++ ++DHH  +  ++++ +   + ep+gs+ +++++ ++   +e+++
  CCE26610.1 128 -LGGQITGCVDHHVDEAFVDENVQ-PRVIEPCGSCMSLIVDECRPAWQELRE 177
                 .999***********965555444.444499*****9999887764444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3038.43
//
Query:       CCE26611.1  [L=254]
Description: related to P.aeruginosa anthranilate synthase component II [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-14   53.7   0.0    2.8e-14   53.3   0.0    1.1  1  GATase         Glutamine amidotransferase class-I
     0.0015   18.2   0.0      0.002   17.8   0.0    1.2  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
  ------ inclusion threshold ------
        0.1   12.4   0.1        1.7    8.3   0.2    2.5  2  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   4.7e-18   2.8e-14      40     175 ..      70     205 ..      51     215 .. 0.78

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 4.7e-18
                 HHSTSEEEEEEESSCTT.....TTTHHHHHHHHCT.STS-EEEETHHHHHHHHHTTTEEEEEECEEEEEEEEEEEETTT.CGGTTTTSEEEEEEEEEEE CS
      GATase  40 lknpdgilvsgGpgspg.....vegkieaikeare.nkiPiLGICLGmQllaiefgrkvvkekekehhggtmrlgddet.allyglknevierhrHrye 131
                 l+++d+il+ g   +       + + ++++++a++  ++ + GIC+G+Q+++ ++g+ v+k   k+   +  +++ +++ +++ g+ ++++  + Hr+ 
  CCE26611.1  70 LDDIDAILITGSRHTAFdnhpwILKLLRFVTRALDtTRVKVVGICFGHQIIGRALGAGVEKSD-KGWEVAVTEVELNDAgKEFFGK-EKLRLHQMHRDI 166
                 5566777776654444445555555555555555559999********************988.7777777777776668999999.99********** PP

                 EESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTT CS
      GATase 132 vnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEsts 175
                 vn+    p++ + ++ ++  +++ ++ +  + +++vQ HPE+t 
  CCE26611.1 167 VNE---FPKDAIPLGSNAF-CQVQAMYKPGQ-YFSVQGHPEFTE 205
                 ***...9*********965.67777766665.**********86 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.3e-07     0.002      36      99 ..      69     129 ..      51     164 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.3e-07
    GATase_3  36 slgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegve 99 
                 sl +d+d++++ G++ t++d+     + l+   +++ ++ ++v+giC G q+ G+ +    gve
  CCE26611.1  69 SL-DDIDAILITGSRHTAFDNHPWILKLLRFVTRALDTTRVKVVGICFGHQIIGRALGA--GVE 129
                 45.67****************9998877777777777899***************9943..333 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.12     7e+02      56      68 ..      70      82 ..      61      91 .. 0.84
   2 ?    8.3   0.2   0.00029       1.7     104     216 .]     106     202 ..      95     202 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.12
  Peptidase_C26 56 ldkldgllltGgq 68
                   ld +d++l+tG++
     CCE26611.1 70 LDDIDAILITGSR 82
                   899********98 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00029
  Peptidase_C26 104 rgvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaikelaeelrveAvaeDgviEai 199
                     +v + giC G+q++  alG      +e+  + +      ++a   +v+++   + +e++g+e+ +   +H+  ++e  ++       +   + a+
     CCE26611.1 106 TRVKVVGICFGHQIIGRALGAG----VEKSDKGW------EVA-VTEVELND--AGKEFFGKEKLRLHQMHRDIVNEFPKDAIPLGSNAFCQVQAM 188
                    567799*********7776654....44322222......222.44555554..446888888888888888888888888888888888888888 PP

  Peptidase_C26 200 eseeakafvlgvQwHPE 216
                      +     +++vQ HPE
     CCE26611.1 189 YKPG---QYFSVQGHPE 202
                    8777...3578888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1865.30
//
Query:       CCE26612.1  [L=514]
Description: related to pisatin demethylase / cytochrome P450 monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-44  153.0   0.0    1.3e-44  152.7   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   0.0   7.4e-49   1.3e-44       6     448 ..      41     496 ..      35     509 .. 0.85

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 7.4e-49
                 EHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHH CS
        p450   6 plplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltp 104
                 +++ ++ ++ +  ++++ +v r  ++k g  +r+ ++   ++ ls+p++++ v+  ++++  +++d+  ++    + +g+ + +    + + l+  l +
  CCE26612.1  41 RFTNFWRAFLTT-RGNVDSVTRGWHQKWGTAVRIGPN---AISLSDPSLIRVVYASTSKNAWRKGDMYRIND--VMINGERISNVFNTQDETLHAKLAR 133
                 677888888887.5999999********999998764...6889*************888777776655555..5666666666555555555555555 PP

                 HHTSH....STTTHHHHHHHHHHHHHHHHHCCCCHCS......EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCC CS
        p450 105 tltsf....gklsleelveeeaedlveklrkkagess......elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqlll 193
                  + +f    ++l +e l++e ++ + +kl +    ++       + + ++l+++a d  ++i Fg++++ +++ k+   +++++     l   +  + +
  CCE26612.1 134 PIGGFwalsKILDMELLMDETIQAFTNKLGTAFADATsgtstsICMMDDWLTYFAWDCAANISFGRHYGFIDQGKD--VEDMIAGSAAGL-RYFAPVSQ 229
                 555555666777****************9987766666778888999**********************9999966..999999998877.44555555 PP

                 CCH.HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHC.TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 194 lfp.llkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllak.kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLa 290
                 +++ + +   ++ lr   +   k + ++ +l+ e +++l +    +r+ +d ++++    k+g++ ++d+++ + ++  ++aG d t+ +l+ + y+L 
  CCE26612.1 230 IPWlDNWLDKNPVLRIGPRPLVKGFMYTVRLVSEYQRKLADG-TLERKSVDSFIDKYhGLKNGHDFVDDNQVIHWLMLNILAGGDSTAGALRPIVYHLG 327
                 5555666678899*****************************.4567777777777642234445789999999************************* PP

                 HSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETT.EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GG CS
        p450 291 knPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk.dvvirg.ylipkGtevivnlyalhrdpevf.pnPeeFdpe 386
                 k+Pe+q++l+ E+d +   + + +++d+q+l yldav++E+ R  p+v l  +R+v+    ++++ ++ip+Gt+v +n++ + rd +vf ++ + F pe
  CCE26612.1 328 KQPEAQARLQSELDGAQVAV-PAQWKDIQHLAYLDAVVREASRANPAVGLMFERQVPAgGFQLPDgRFIPQGTTVGINPTVVTRDVAVFgDHVDDFIPE 425
                 **************999775.89***********************************99****99********************************* PP

                 GGB-TTS.........CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEES CS
        p450 387 RFldekg.........nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppile 448
                 R+l++ +         + + ++ a l FGaG R C G+ lA++e+  + atl+  F ++l++ + +++  +
  CCE26612.1 426 RWLQRPQesddnfafrRRRMEEAADLMFGAGSRVCMGKALAKVEMYKLTATLFALFHFSLPDINHEWTHRN 496
                 ****99999****999666899999**********************************988777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3654.59
//
Query:       CCE26613.1  [L=392]
Description: related to integral membrane protein PTH11 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2833.75
//
Query:       CCE26614.1  [L=593]
Description: probable 2-isopropylmalalate synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-63  212.5   0.0    1.2e-62  211.9   0.0    1.2  1  HMGL-like   HMGL-like
    5.8e-23   81.3   0.0    1.4e-22   80.0   0.0    1.7  1  LeuA_dimer  LeuA allosteric (dimerisation) domain


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.9   0.0   1.3e-66   1.2e-62      15     264 .]      26     299 ..      24     299 .. 0.97

  Alignments for each domain:
  == domain 1  score: 211.9 bits;  conditional E-value: 1.3e-66
                 TSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B......--EE-SSHHHHHHHHH....TT-SEEEEEEES-HHHHHHHHS CS
   HMGL-like  15 alkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkar....ilalvrarekdikaavealkgagakrvhvfiatselhlkaklk 109
                 +l ++++ eek +++k+L ++g++eiEv+fp as+ df+++r ++++++       +++l  +r ++ik++ve+++ga+++++h+++at   +++++++
  CCE26614.1  26 SLPDPMTGEEKWRYFKMLCDLGYKEIEVSFPCASQIDFDFTRRLIETPGAVPddvaVQVLSPCRPDLIKRTVESVRGAKNAIIHIYLATCACFRQVVFG 124
                 67899*****************************************9987734677******************************************* PP

                 STHHHHHHHHHHHHHHHHHTT-E..........TTT-BTTTBS--HHHHHHHHHHHHHH........T-SEEEEEETTS---HHHHHHHHHHHHHHS-. CS
   HMGL-like 110 kdreevakkaeeavkaarslgkd..........velsledasrtdleflaevveaaeea........GatriniaDtvGvltPneaaelisalkervk. 189
                  + e+ ++ a+e++k++rsl+kd           e+s+e +s td++++++v+ a+++a          +++n+a+tv++ tPn++a+l++ + +++  
  CCE26614.1 125 TSEEHTIELAVECTKLVRSLTKDnpeasetrwqFEFSPEFFSGTDPDYALKVCRAVKAAwqpdnqkgDQIIFNLAATVELSTPNAYADLVENFGNKIGg 223
                 ******************************************************************778899**************************9 PP

                 ..GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT-B----HHHHHHHHHHH CS
   HMGL-like 190 .dkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealgvdtgldlqklrsiaalv 264
                  + v++s+H+Hnd+G+ +a+++++ +aGadrv+g+++G+Ger+Gn++l++l+++l+++g ++g+d+++l ++ ++v
  CCE26614.1 224 rEDVCISLHPHNDRGTSIAAAELGQMAGADRVEGCLFGNGERTGNVDLVTLALNLYTQGTSPGIDFSDLNAVIDMV 299
                 9*********************************************************************998886 PP

>> LeuA_dimer  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   1.6e-26   1.4e-22       4     131 ..     417     559 ..     414     561 .. 0.84

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 1.6e-26
                 XXXXXXXXXXXXXXXX.--EEEEEEEEEEETTCEEEEEEEEEE...............TTEEEEEEEE-SSHHHHHHHHHHHHHHHT-EEEEEEEE--T CS
  LeuA_dimer   4 dedlealvkdelleae.erlkleklqvssgedelstatvklevk..............dgeekeasaeGnGpvdAllnAlrkalgvdikLldYsvhait 87 
                 + ++++l+++ +   e  +l+l +++++ ++++++ a+v  + +              dg+e++ ++ GnGp+++++ Al+  +++d+++++Y++hai+
  CCE26614.1 417 ASEITELFEKAYFVDEnPHLSLIDYSITPDRSQSPLAVVGKTQDtkslrrifegvilmDGQEVKLRGRGNGPISSMISALKD-INIDLDIQSYHEHAIG 514
                 56899999999999887999999999999999777777755543233333344445556666********************.9*************** PP

                 T-TT--EEEEEEEE--GGGE.EEEEEEESSHHHHHHHHHHHHHHH CS
  LeuA_dimer  88 egtdaqaevrVelevddgkk.vsgvGvdsdiveASlkAlisalnr 131
                 eg  ++a+++ e++ +dg++ v+gvG+++d+v++Sl Al+sa+  
  CCE26614.1 515 EGRSVKAASYLECKPTDGTQtVWGVGIHEDVVQSSLMALLSAVSS 559
                 **************9885555*********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4324.70
//
Query:       CCE26615.1  [L=1197]
Description: uncharacterized protein CPUR_00084 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-23   82.6   2.3     0.0013   19.3   0.0    7.2  7  Ank_2     Ankyrin repeats (3 copies)
    8.9e-19   67.6   8.5      0.033   14.8   0.0    8.0  8  Ank_4     Ankyrin repeats (many copies)
    2.6e-11   43.5   4.9    0.00035   20.8   0.0    6.6  6  Ank_5     Ankyrin repeats (many copies)
    3.8e-05   23.9   3.4        6.3    7.4   0.0    6.9  7  Ank       Ankyrin repeat
    0.00023   21.4  15.0         17    6.4   0.0    9.5 11  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.7e-05      0.13      26      61 ..     301     341 ..     283     350 .. 0.78
   2 ?   -2.8   0.0       2.9     1e+04      55      65 ..     448     458 ..     370     461 .. 0.63
   3 !   16.3   0.0     3e-06     0.011      17      76 ..     532     602 ..     512     610 .. 0.73
   4 !   11.8   0.0   7.7e-05      0.28      10      64 ..     592     662 ..     588     694 .. 0.67
   5 !   13.8   0.0   1.8e-05     0.066      11      73 ..     677     749 ..     671     757 .. 0.72
   6 !    5.9   0.0    0.0052        19      50      80 ..    1022    1054 ..     996    1057 .. 0.69
   7 !   19.3   0.0   3.5e-07    0.0013      12      68 ..    1122    1183 ..    1102    1193 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.7e-05
       Ank_2  26 gktaLhyAakngnleivklLleh......adndgrtpLhyAa 61 
                 ++t++h  ++ g +e++k+Ll++      +   g +pLh+A 
  CCE26615.1 301 HLTPMHMTCMLGMTELCKYLLAEgafiisTGAFG-SPLHCAL 341
                 489*********99*******9776765333555.69**997 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.9
       Ank_2  55 tpLhyAarsgh 65 
                  +++yA+  gh
  CCE26615.1 448 MAMMYAVVLGH 458
                 35555555555 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 3e-06
       Ank_2  17 l.egadpn...k....ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekg 76 
                 l + + pn   k    ++ t +h+A+   + e++ +L ++      +d  grtpL+++    + +i++lL+e++
  CCE26615.1 532 LdSRFSPNlryKspwlDNGTLVHAAVLCRQAEMLTTLASYnadmyaVDARGRTPLMVSE---NVQILRLLVENY 602
                 4655556665524677666*********999*******977667677799*******94...679*****9763 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 7.7e-05
       Ank_2  10 lelvklLlegadpn...k..ngktaLhyAakngnleivklLleh.......ad...ndgrtpLhyAars.g 64 
                  ++++lL+e++ ++   +  +g+++ hy a  ++l +  +L+++       ++   ++g++pL+ +  + +
  CCE26615.1 592 VQILRLLVENYHVStesTdaDGRNIWHYVAATNDLTLSTWLCKNdpsreanINsitKQGHSPLIESLMYiN 662
                 568999996655544441479***********999999****9777777552266699*****99887653 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 1.8e-05
       Ank_2  11 elvklLleg..adpnk..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLl 73 
                 ++v lLle    d+nk   ++ + h+Aa+ g l +v +L e+      +d++gr+pLh+   s  + ++k Ll
  CCE26615.1 677 DVVYLLLEQdyLDINKgsSKLPIGHLAAQWGELRMVNTLAEKglnfavLDDEGRSPLHHLNTSCEEGLAKRLL 749
                 5788888332455663436677778******999******977667777799*****8765555556666666 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0052
       Ank_2   50 d..ndgrtpLhyAarsghleivklLlekgadin 80  
                  +  ++ +t L  A+ ++ l+i+ +Lle++ad+ 
  CCE26615.1 1022 EvpDKDTTLLSEAIANDFLDIFAILLERDADPG 1054
                  255678899999999999999999999999875 PP

  == domain 7  score: 19.3 bits;  conditional E-value: 3.5e-07
       Ank_2   12 lvklLl.egadpnkngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghlei 68  
                  ++k ++ + +d+n    t+ h+Aa+++++  +++L  +      +d++g+t+L +Aa  +++e+
  CCE26615.1 1122 TIKTIIhSRSDIN--RGTPAHLAARRNDIRSIEILQRNgadlgrVDDSGQTILDIAAAISSPEL 1183
                  4444544446665..56**********8888*****9786777777*******77764344455 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   3.5e-05      0.12       1      44 [.     301     342 ..     301     343 .. 0.92
   2 ?    4.6   0.1     0.014        50       9      54 ..     519     568 ..     512     569 .. 0.82
   3 !   10.5   0.0    0.0002      0.74       4      54 ..     552     598 ..     549     599 .. 0.81
   4 !    5.9   0.0    0.0055        20       9      54 ..     587     632 ..     586     632 .. 0.87
   5 !   14.8   0.0   9.3e-06     0.033       6      41 ..     701     735 ..     698     736 .. 0.95
   6 ?   -1.5   0.0       1.2   4.2e+03       3      39 ..    1029    1066 ..    1028    1067 .. 0.66
   7 !   13.0   0.0   3.4e-05      0.12       4      54 ..    1101    1154 ..    1100    1155 .. 0.86
   8 !   10.0   0.0   0.00028         1      22      49 ..    1155    1182 ..    1152    1187 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.5e-05
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAak 44 
                 +lt++h+ ++ g +el+++Ll+ ga i  +  +   ++lh+A++
  CCE26615.1 301 HLTPMHMTCMLGMTELCKYLLAEGAFIIST--GAFGSPLHCALL 342
                 689**********************99888..8899******85 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.014
       Ank_4   9 aisgrlelvrlLl.ekgadinaq...dnrsGetalhiAakrgnveilklL 54 
                 + +g+  ++++L  +++ ++n +   +  +  t++h A++  + e+l  L
  CCE26615.1 519 ILHGNDMYLQRLAlDSRFSPNLRyksPWLDNGTLVHAAVLCRQAEMLTTL 568
                 45888888886654889999999987779999*********999999866 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.0002
       Ank_4   4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 + h+a+   + e++  L +++ad +a+ +++G+t+l      +nv+il+lL
  CCE26615.1 552 LVHAAVLCRQAEMLTTLASYNADMYAV-DARGRTPLMVS---ENVQILRLL 598
                 455555555568999************.********998...888888888 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0055
       Ank_4   9 aisgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklL 54 
                 + s++++++rlL+e+  ++   + +++G++  h++a ++++    +L
  CCE26615.1 587 MVSENVQILRLLVENyHVSTEST-DADGRNIWHYVAATNDLTLSTWL 632
                 55899********8779997777.**************999888887 PP

  == domain 5  score: 14.8 bits;  conditional E-value: 9.3e-06
       Ank_4   6 hyaaisgrlelvrlLlekgadinaqdnrsGetalhi 41 
                 h aa+ g l++v  L ekg +     +++G+++lh+
  CCE26615.1 701 HLAAQWGELRMVNTLAEKGLNFAVL-DDEGRSPLHH 735
                 8899*****************9998.*********6 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 1.2
       Ank_4    3 taLhyaaisgrlelvrlLlekgad..inaqdnrsGetal 39  
                  t+L  a++   l++ ++Lle++ad    ++ ++   tal
  CCE26615.1 1029 TLLSEAIANDFLDIFAILLERDADpgAGRT-DKAITTAL 1066
                  55666666666888999****999444444.66666665 PP

  == domain 7  score: 13.0 bits;  conditional E-value: 3.4e-05
       Ank_4    4 aLhyaaisgrlelvrlLlekgad...inaqdnrsGetalhiAakrgnveilklL 54  
                  a++ a++++ +e+++ L+++      i+ +++++  t+ h Aa+r++++ ++ L
  CCE26615.1 1101 AIDFAIQAQAHEALETLFSSSTIktiIHSRSDINRGTPAHLAARRNDIRSIEIL 1154
                  6899**************8743346699999****************9887755 PP

  == domain 8  score: 10.0 bits;  conditional E-value: 0.00028
       Ank_4   22 ek.gadinaqdnrsGetalhiAakrgnve 49  
                  ++ gad+ ++ ++sG+t l+iAa ++++e
  CCE26615.1 1155 QRnGADLGRV-DDSGQTILDIAAAISSPE 1182
                  5449******.************999877 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.37   1.3e+03      16      44 ..     301     329 ..     294     340 .. 0.77
   2 !    6.9   0.1    0.0022       7.9      11      53 ..     546     586 ..     544     588 .. 0.92
   3 ?    2.4   0.0     0.057   2.1e+02       1      53 [.     598     654 ..     591     655 .. 0.67
   4 ?    4.2   0.0     0.016        58      21      54 ..     701     734 ..     701     736 .. 0.93
   5 ?    3.5   0.0     0.026        92      12      44 ..    1024    1055 ..    1016    1063 .. 0.83
   6 !   20.8   0.0   9.8e-08   0.00035      10      56 .]    1134    1175 ..    1128    1175 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.37
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnl 44 
                   tp+h+ +  g  +++++Lla+ga +  
  CCE26615.1 301 HLTPMHMTCMLGMTELCKYLLAEGAFIIS 329
                 34999999999999*******99987655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0022
       Ank_5  11 rldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 +ld+g  t  h A+ ++ a+++  L  ++ad  + d+rG+t+l
  CCE26615.1 546 WLDNG--TLVHAAVLCRQAEMLTTLASYNADMYAVDARGRTPL 586
                 56767..999********************************8 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.057
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl....argadlnltdsrGltal 53 
                 L+e+ ++++  +d +g ++ h+ a  + +++  +L+     r+a++n  +++G ++l
  CCE26615.1 598 LVENYHVSTESTDADGRNIWHYVAATNDLTLSTWLCkndpSREANINSITKQGHSPL 654
                 556667777777777777777777777777777777666666666666666666665 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.016
       Ank_5  21 hvAakygaadvvrlLlargadlnltdsrGltald 54 
                 h+Aa  g +++v+ L + g++  + d++G+++l+
  CCE26615.1 701 HLAAQWGELRMVNTLAEKGLNFAVLDDEGRSPLH 734
                 889999999***********************98 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.026
       Ank_5   12 ldgggntpLhvAakygaadvvrlLlargadlnl 44  
                  +d++  t L  A+ +  +d++ +Ll+r ad+++
  CCE26615.1 1024 PDKDT-TLLSEAIANDFLDIFAILLERDADPGA 1055
                  55554.99999*****************99976 PP

  == domain 6  score: 20.8 bits;  conditional E-value: 9.8e-08
       Ank_5   10 nrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56  
                  nr      tp h+Aa+++  + +++L  +gadl+  d++G+t ld+A
  CCE26615.1 1134 NRG-----TPAHLAARRNDIRSIEILQRNGADLGRVDDSGQTILDIA 1175
                  333.....**************************************9 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.049   1.7e+02       4      25 ..     303     325 ..     302     330 .. 0.89
   2 ?    0.8   0.0      0.22     8e+02       4      29 ..     335     383 ..     335     384 .. 0.52
   3 ?    4.8   0.0     0.012        44       2      22 ..     582     599 ..     581     611 .. 0.81
   4 ?   -3.1   0.0       3.6   1.3e+04       7      19 ..     701     713 ..     701     719 .. 0.81
   5 ?    0.2   0.0      0.33   1.2e+03       2      22 ..     729     749 ..     728     760 .. 0.66
   6 ?   -3.4   0.0       4.5   1.6e+04       9      27 ..    1034    1053 ..    1029    1055 .. 0.67
   7 !    7.4   0.0    0.0018       6.3       4      31 ..    1137    1165 ..    1137    1166 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.049
                 BHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGA 25 
                 TP H+ ++ g ++ +k+LL  GA
  CCE26615.1 303 TPMHMTCMLGMTELCKYLLaEGA 325
                 9******999899******7787 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.22
                 BHHHHH..................H....HHTTHHHHHHHH.TTTSTTC CS
         Ank   4 TPLHlA..................a....tngkkriiklLL.hGAnlna 29 
                 +PLH+A                  +     +++ +ii ++L +G + +a
  CCE26615.1 335 SPLHCAllgpkvllqmrqplswstVlremEPANDDIINAILaDGEDCDA 383
                 6999984444444444444433330333333335688888877766665 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.012
                 SBBHHHHHHHHTTHHHHHHHH CS
         Ank   2 GnTPLHlAatngkkriiklLL 22 
                 G+TPL++ +   +++i++lL+
  CCE26615.1 582 GRTPLMV-S--ENVQILRLLV 599
                 9******.9..8889999998 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 3.6
                 HHHHHHTTHHHHH CS
         Ank   7 HlAatngkkriik 19 
                 HlAa+ g +r++ 
  CCE26615.1 701 HLAAQWGELRMVN 713
                 9***999888776 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.33
                 SBBHHHH...HHHHTTHHHHHHHH CS
         Ank   2 GnTPLHl...AatngkkriiklLL 22 
                 G++PLH     + +g    +k LL
  CCE26615.1 729 GRSPLHHlntSCEEG---LAKRLL 749
                 99****534456667...666665 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 4.5
                  HHHHTTHHHHHHHH.TTTST CS
         Ank    9 AatngkkriiklLL.hGAnl 27  
                  A+ n+ ++i   LL + A++
  CCE26615.1 1034 AIANDFLDIFAILLeRDADP 1053
                  66555578999999656987 PP

  == domain 7  score: 7.4 bits;  conditional E-value: 0.0018
                  BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank    4 TPLHlAatngkkriiklLL.hGAnlnald 31  
                  TP HlAa++++ r i+ L  +GA+l  +d
  CCE26615.1 1137 TPAHLAARRNDIRSIEILQrNGADLGRVD 1165
                  899*************776779**97776 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.014        49       3      26 ..     302     324 ..     300     326 .. 0.90
   2 ?   -2.2   0.1         3   1.1e+04       4      11 ..     335     342 ..     335     347 .. 0.84
   3 ?   -2.3   0.1       3.2   1.1e+04      13      30 ..     366     382 ..     363     383 .. 0.82
   4 ?   -3.2   0.0         5   1.8e+04       4      28 ..     551     574 ..     549     574 .. 0.77
   5 ?    1.8   0.0      0.14   5.1e+02       2      27 ..     582     604 ..     581     606 .. 0.84
   6 ?   -1.2   0.0       1.4   5.2e+03      13      30 ..     674     691 ..     672     692 .. 0.84
   7 ?   -2.2   0.0       2.9     1e+04       7      27 ..     701     720 ..     699     723 .. 0.86
   8 ?    1.5   0.0      0.19   6.7e+02       1      23 [.     728     750 ..     728     754 .. 0.74
   9 ?    4.4   0.0     0.021        77       4      29 ..    1029    1053 ..    1029    1055 .. 0.92
  10 !    6.4   0.0    0.0048        17       4      29 ..    1137    1161 ..    1134    1162 .. 0.88
  11 ?    1.8   0.0      0.15   5.3e+02       2      20 ..    1168    1186 ..    1167    1194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.014
       Ank_3   3 etpLhlAarsgnleivkfLlenkg 26 
                  tp+h+ ++ g +e++k+Ll   g
  CCE26615.1 302 LTPMHMTCMLGMTELCKYLLA-EG 324
                 69******************8.45 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3
       Ank_3   4 tpLhlAar 11 
                 +pLh+A++
  CCE26615.1 335 SPLHCALL 342
                 79***986 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.2
       Ank_3  13 gnleivkfLlenkgadvn 30 
                 +n +i+ ++l   g d++
  CCE26615.1 366 ANDDIINAILA-DGEDCD 382
                 57789******.999987 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 5
       Ank_3   4 tpLhlAarsgnleivkfLlenkgad 28 
                 t+ h A+++   e++  L   ++ad
  CCE26615.1 551 TLVHAAVLCRQAEMLTTLAS-YNAD 574
                 78899999999998877777.6665 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.14
       Ank_3   2 GetpLhlAarsgnleivkfLlenkga 27 
                 G+tpL+    s n+ i+++L+en+++
  CCE26615.1 582 GRTPLM---VSENVQILRLLVENYHV 604
                 899999...89999999999998765 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 1.4
       Ank_3  13 gnleivkfLlenkgadvn 30 
                  ++++v +Lle+   d+n
  CCE26615.1 674 PRPDVVYLLLEQDYLDIN 691
                 5789999****9999998 PP

  == domain 7  score: -2.2 bits;  conditional E-value: 2.9
       Ank_3   7 hlAarsgnleivkfLlenkga 27 
                 hlAa  g l +v  L e kg 
  CCE26615.1 701 HLAAQWGELRMVNTLAE-KGL 720
                 99*******99999999.675 PP

  == domain 8  score: 1.5 bits;  conditional E-value: 0.19
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 +G++pLh+   s+   ++k Lle
  CCE26615.1 728 EGRSPLHHLNTSCEEGLAKRLLE 750
                 59*****9877777666776666 PP

  == domain 9  score: 4.4 bits;  conditional E-value: 0.021
       Ank_3    4 tpLhlAarsgnleivkfLlenkgadv 29  
                  t+L +A+ ++ l+i   Lle + ad+
  CCE26615.1 1029 TLLSEAIANDFLDIFAILLE-RDADP 1053
                  89*************99*99.99998 PP

  == domain 10  score: 6.4 bits;  conditional E-value: 0.0048
       Ank_3    4 tpLhlAarsgnleivkfLlenkgadv 29  
                  tp hlAar +++  ++ L + +gad+
  CCE26615.1 1137 TPAHLAARRNDIRSIEILQR-NGADL 1161
                  9***********76999999.89997 PP

  == domain 11  score: 1.8 bits;  conditional E-value: 0.15
       Ank_3    2 GetpLhlAarsgnleivkf 20  
                  G+t+L +Aa   ++e++++
  CCE26615.1 1168 GQTILDIAAAISSPELMDL 1186
                  9*********999997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 8011.99
//
Query:       CCE26616.1  [L=226]
Description: uncharacterized protein CPUR_00085 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-09   37.1   0.0    3.7e-09   36.9   0.0    1.2  1  APH             Phosphotransferase enzyme family
     0.0075   15.9   0.0       0.01   15.4   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
       0.16   12.0   0.0       0.26   11.3   0.0    1.3  1  GPAT_N          Glycerol-3-phosphate acyltransferase N-termin


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   6.2e-13   3.7e-09     152     209 ..      88     144 ..      10     174 .. 0.68

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 6.2e-13
                 HHHHHHHH--S.SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCH CS
         APH 152 vlaalaallpg.elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavll 209
                 +  + a +l++ + +t+++Hg l p+N++v+  +g+v+++iD+e ag+ p  ++   + 
  CCE26616.1  88 LVGQEAVELHTnHYRTCFTHGNLTPRNIMVK--NGHVVAIIDWESAGWFPEYWEYTKAH 144
                 444444455557899****************..9**************98888776665 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.7e-06      0.01     140     177 ..      98     134 ..      79     163 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-06
                     CHGG-EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEE CS
  Choline_kinase 140 elespvvfcHnDlqegNillnkeekklvlIDFEYagyn 177
                      +++   f H  l ++Ni++ k+ + + +ID+E ag  
      CCE26616.1  98 TNHYRTCFTHGNLTPRNIMV-KNGHVVAIIDWESAGWF 134
                     4556689*************.99999*******99865 PP

>> GPAT_N  Glycerol-3-phosphate acyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.3e-05      0.26       5      61 ..      64     120 ..      60     128 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.3e-05
      GPAT_N   5 ldarseeellsvirkeveagkLpanvaagmeelYqNYknAVlqsGipkAdeivlsnm 61 
                 l+  s e++ sv+r+++  g+  + v ++  el++N     +  G+   ++i+++n 
  CCE26616.1  64 LGPLSHEDFHSVVRGQMPLGRTAELVGQEAVELHTNHYRTCFTHGNLTPRNIMVKNG 120
                 5666899*****************************99999*************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1744.43
//
Query:       CCE26617.1  [L=1213]
Description: probable ATP dependent RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-22   77.9   0.0    1.1e-21   76.9   0.0    1.6  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    2.1e-20   73.0   0.1    2.1e-20   73.0   0.1    3.0  2  HA2          Helicase associated domain (HA2)
    4.2e-13   49.6   0.0    1.2e-12   48.2   0.0    1.8  1  Helicase_C   Helicase conserved C-terminal domain
    4.4e-11   43.0   0.1    9.3e-11   41.9   0.1    1.6  1  S1           S1 RNA binding domain
    1.3e-06   28.8   0.0    3.8e-06   27.2   0.0    1.8  1  AAA_22       AAA domain
    2.2e-05   24.3   1.2    8.1e-05   22.5   1.2    1.9  1  DEAD         DEAD/DEAH box helicase
    2.6e-05   24.0   0.3     0.0001   22.1   0.2    2.0  2  AAA_30       AAA domain
    0.00016   20.8   0.0    0.00043   19.4   0.0    1.7  1  T2SSE        Type II/IV secretion system protein
     0.0068   16.9   0.7       0.42   11.1   0.2    3.0  2  ABC_tran     ABC transporter
  ------ inclusion threshold ------
       0.01   16.2   0.2      0.023   15.0   0.2    1.5  1  AAA_19       AAA domain
      0.011   15.8   0.3       0.23   11.5   0.3    2.6  1  AAA_14       AAA domain
      0.046   13.0   0.0      0.088   12.0   0.0    1.4  1  DUF2075      Uncharacterized conserved protein (DUF2075)
      0.062   12.9   0.7       0.19   11.3   0.7    1.9  1  SRP54        SRP54-type protein, GTPase domain
        0.1   13.1   0.1        3.4    8.1   0.1    2.8  2  AAA          ATPase family associated with various cellular a
       0.12   12.8   0.4       0.55   10.6   0.0    2.4  2  AAA_16       AAA ATPase domain
       0.12   11.8   0.1       0.32   10.4   0.1    1.6  1  PhoH         PhoH-like protein


Domain annotation for each model (and alignments):
>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0     1e-24   1.1e-21       1      81 [.    1087    1162 ..    1087    1164 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 1e-24
                   HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHST CS
  OB_NTP_bind    1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfag 81  
                   +r++l++G++ + arkdp++  ykt++++t+v++hpsS+l+     k+ ewv+y+ lv ttk y++ ++ i+p wL++ a+
   CCE26617.1 1087 IRRALCSGFFRNAARKDPQEG-YKTLTEGTPVYLHPSSALFG----KQAEWVIYHDLVLTTKEYMHCTSSIEPKWLVEAAP 1162
                   799***************998.*******************8....******************************99886 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.5       4.9   5.5e+03      71      87 ..     468     480 ..     443     507 .. 0.49
   2 !   73.0   0.1   1.9e-23   2.1e-20       1     108 []     940    1029 ..     940    1029 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.9
         HA2  71 ekeeeeeeeekakkkrk 87 
                 ++ +e   +++a+k+++
  CCE26617.1 468 KQ-QE---ADAAAKEKQ 480
                 11.11...111111111 PP

  == domain 2  score: 73.0 bits;  conditional E-value: 1.9e-23
         HA2    1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsv.eeifleeneeekeeeeeeeekakkkrkeeekarrkl 96  
                  Ale L+al+ALd+eg lT lGrkma++P++p+ ak+Llaa++  ++c++e+++i+A+ls  + +f +++e++         ++kk+++ +       
  CCE26617.1  940 ALEELYALSALDDEGLLTRLGRKMADFPMDPSSAKVLLAAVD--HDCAEEALSIIAMLSLqGVVFYRPKEKQTVA------DQKKSKFHD------- 1021
                  899*************************************55..5**************8355566666443222......222333333....... PP

         HA2   97 ahkdaegDhltl 108 
                    +  +gDhltl
  CCE26617.1 1022 --P--HGDHLTL 1029
                  ..3..4999996 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0     1e-15   1.2e-12       8     111 .]     749     878 ..     739     878 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 1e-15
                 HHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT........TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C   8 ellkleeeggkilifvntidrlek.vklllekk........gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv 97 
                 ++ +l+e +g+il+f++ +++++  +++l e+         ++ v++++++lp + + +i++    g ++v+iat++ae++i+i+++ +V++ ++ ++ 
  CCE26617.1 749 QI-HLTEPKGDILLFLTGKEEIDTaCEILYERMkalgpsvpELLVLPVYAQLPPEMQSRIFDPAPPGARKVVIATNIAETSITIDEIYYVVDPGFVKQN 846
                 33.6899*************9999989996666778888999*****************************************************9443 PP

                 ..................HHHHHHHTTSSSTT CS
  Helicase_C  98 ..................tsyiqriGRtgRag 111
                                   ++++qr+GR+gR g
  CCE26617.1 847 aydpklgmdslvitpvsqAQANQRAGRAGRTG 878
                 367799999999******************86 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   8.3e-14   9.3e-11       2      75 .]     241     315 ..     240     315 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 8.3e-14
                 STTTCEEEEEEEEEETTEEEEEET...TTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelg...ngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 p+ ++v+ G Vt + ++GafV+l    ++v+g+v++s l    r+++p++vl++G+ v vkv +++    +i+ls+k
  CCE26617.1 241 PQLHKVYPGHVTGIKDFGAFVNLHhvrGKVDGLVHISRLTTGQRIKHPSDVLSKGQDVWVKVSNIEGS--KISLSMK 315
                 56789******************99999************************************9987..5777765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   3.4e-09   3.8e-06       4     126 ..     563     697 ..     560     707 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 3.4e-09
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.............erlsseell.ealeqalra 88 
                 + +il+v+Ge+G+GKTt l ++l ++        ++++++ +t p      ++++++++++g +l +             +  + + +   +l++ +  
  CCE26617.1 563 ENQILIVVGETGSGKTTQLTQYLAEAGF------ADKGIIGCTQPRRVAAMSVAKRVAEEVGCQLGGevgylvrfddctsPATRIKYMTdGMLQREILM 655
                 679**********************843......599999999999999*************999999***********88888888889999999999 PP

      AAA_22  89 rav...ielliiDEaqhlr..seealeeLrsllnlsrkgvqli 126
                  ++    +++++DEa+  +  ++ ++  L++ ++ +r ++++i
  CCE26617.1 656 DMDlkrYSVIMLDEAHERTiaTDVLFALLKKAVK-RRPDLKII 697
                 9999999*********953355777777766665.45555555 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   1.2   7.3e-08   8.1e-05       6     170 ..     556     704 ..     544     710 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 7.3e-08
                 HHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
        DEAD   6 eaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdivvg 103
                 ++i+++ +++ ++v +eTGsGKT+     + ++ +     ++  + +  P r  a  +++++ +      +++    g+v +    ++  +  ++i ++
  CCE26617.1 556 QIIKAVEENQILIVVGETGSGKTTQLTQYLAEAGFA----DKGIIGCTQPRRVAAMSVAKRVAEEVG---CQLG---GEVGYLVRFDDCTSPaTRIKYM 644
                 6788888999999***********988887766654....333555899******999999977776...2332...34444444444432259***** PP

                 EHHHHHH.HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 104 tpgrldd.llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 t g+l++ +l    ++l++ +++ lDEa++       d + ++l++  +   d k    +iv SATl 
  CCE26617.1 645 TDGMLQReILM--DMDLKRYSVIMLDEAHERTIA--TDVLFALLKKAVKRRPDLK----IIVTSATLD 704
                 *******4444..567*************99886..7777777777744444444....********8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.6   2.9e+03      52      81 ..      10      39 ..       6      54 .. 0.78
   2 !   22.1   0.2     9e-08    0.0001      16     115 ..     562     690 ..     555     699 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.6
      AAA_30 52 lAptgkaAkvLaeelgieastiakllkrlk 81
                l+  +k+  +L++++gi  +t+a++l +++
  CCE26617.1 10 LSLVSKVTSELQNHVGISDKTLAEFLIAQR 39
                6667889999***************97776 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 9e-08
      AAA_30  16 sgdrvavltGpAGtGKttalkal.reaweaa.g.......grviglAptgkaAkvLaeelgieastiakllkrlk...................grarl 86 
                 +++++ +++G  G+GKtt l+++ +ea  a+ g       +rv++++  +++A++++ +lg e   + ++ + +                    + ++l
  CCE26617.1 562 EENQILIVVGETGSGKTTQLTQYlAEAGFADkGiigctqpRRVAAMSVAKRVAEEVGCQLGGEVGYLVRFDDCTSpatrikymtdgmlqreilmD-MDL 659
                 45569***************99876665555369***********************77765444444444333344444444455669999954.789 PP

      AAA_30  87 epgtllivDEag..mvdtkqlaallkaaeka 115
                 ++ ++++ DEa    ++t+ l allk+a k+
  CCE26617.1 660 KRYSVIMLDEAHerTIATDVLFALLKKAVKR 690
                 999********73256999999999998775 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.9e-07   0.00043     117     160 ..     552     595 ..     461     609 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.9e-07
       T2SSE 117 kiaevlrkavrerglilvsGgTgsGKttllyallkeinksderi 160
                 +++  + kav+e+++++v G TgsGKtt l   l+e    d+ i
  CCE26617.1 552 AFRGQIIKAVEENQILIVVGETGSGKTTQLTQYLAEAGFADKGI 595
                 5566788999********************99999877666555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.2   0.00037      0.42       8      29 ..     561     582 ..     556     620 .. 0.78
   2 ?    2.7   0.0      0.15   1.7e+02     100     135 ..     639     670 ..     608     672 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00037
                 EETTSEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlk 29 
                 ++e++++ +vGe+G+GK+t l 
  CCE26617.1 561 VEENQILIVVGETGSGKTTQLT 582
                 7899**************9553 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.15
                 BGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 100 tvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                 t++    + +  G+ qr  l+ + lk+ ++++lDE+
  CCE26617.1 639 TRI----KYMTDGMLQREILMDMDLKRYSVIMLDEA 670
                 333....8899************************8 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.2     2e-05     0.023       6     129 ..     559     691 ..     555     698 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2e-05
      AAA_19   6 e.alkekvllvtaGpGtGKTrvlkhivallvelgg.....vkpeeillvaftgrAakelrerlaalgae.............atTiHrlalldfddllt 85 
                 +   ++++l+v++  G+GKT+ l++ +a++  + +      +p++++++++++r a+e+  +l   g+e             at i ++          
  CCE26617.1 559 KaVEENQILIVVGETGSGKTTQLTQYLAEAGFADKgiigcTQPRRVAAMSVAKRVAEEVGCQL---GGEvgylvrfddctspATRIKYM---------- 644
                 43457889999************9998877654431111134466666666666666666666...44444455544332222222222.......... PP

      AAA_19  86 ealelle......eaeeekklqeeellivDEfqd..vd.elqyrLlkallgek 129
                              e   + +l++  +++ DE+ +  +  ++ ++Llk+ ++++
  CCE26617.1 645 ------TdgmlqrEILMDMDLKRYSVIMLDEAHErtIAtDVLFALLKKAVKRR 691
                 ......12222244445678855559999999762244566777777766555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3    0.0002      0.23       2     100 ..     564     701 ..     563     708 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
      AAA_14   2 rkilvitGaRrvGKTtllkqlikell.........vkkesilyinldderd..........................kkladpe.....kllelilekl 60 
                 ++il+++G   +GKTt l q++ e           ++++++  +++ +                                   +      l        
  CCE26617.1 564 NQILIVVGETGSGKTTQLTQYLAEAGfadkgiigcTQPRRVAAMSVAKRVAeevgcqlggevgylvrfddctspatrI-----KymtdgMLQ------- 650
                 7899**************999998888888888888888888888887655678888888888777765444333221.....111112222....... PP

      AAA_14  61 ke........ekktylflDEiqev....pewekalkslvdegknldvivtGS 100
                  +        ++ ++++lDE++e     + ++  lk+ v+++++l++ivt  
  CCE26617.1 651 -ReilmdmdlKRYSVIMLDEAHERtiatDVLFALLKKAVKRRPDLKIIVTSA 701
                 .12333355567888*******99555455666777777788999**99975 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.9e-05     0.088       2      98 ..     565     671 ..     564     687 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.9e-05
     DUF2075   2 avvlVtGvaGtGKtvvllnllael.......eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsef...kkaeekkeepked 90 
                 ++++V G++G+GKt  l + lae+           + r+++ +sv ++  + +  +l ++     + ++ + +++ i+ ++ +   ++   + + ++  
  CCE26617.1 565 QILIVVGETGSGKTTQLTQYLAEAgfadkgiIGCTQPRRVAAMSVAKRVAEEVGCQLGGEVGYLVRFDDCTSPATRIKYMTDGmlqREILMDMDLKRYS 663
                 689*********************8876666666699*********************99955556688899999999999889977777888899*** PP

     DUF2075  91 vvivDEAh 98 
                 v+  DEAh
  CCE26617.1 664 VIMLDEAH 671
                 ******** PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.7   0.00017      0.19       2      59 ..     565     621 ..     564     714 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
                 EEEEEEESTTSSHHHHHHHHHHHHHHT..TS-EEEEEESTSSTTHHHHHHHHHHHTTEEE CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkke..gkkvllvaaDtfRaaAveQLktlaeklgvpv 59 
                 +++++vG +G+GKTt l+   ++l +   + k ++ ++   R+aA+   k +ae++g ++
  CCE26617.1 565 QILIVVGETGSGKTTQLT---QYLAEAgfADKGIIGCTQPRRVAAMSVAKRVAEEVGCQL 621
                 57899**********865...566666557789999**********99999999998775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0031       3.4       2     112 ..     568     705 ..     567     714 .. 0.63
   2 ?    1.6   0.0       0.3   3.4e+02      78     120 ..    1055    1092 ..    1047    1101 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0031
                 EEESSTTSSHHHHHHHHHHHHTHE............EEEEETTTCSSS...........................STTHHHHHHHHHHHHHHHTSTSEE CS
         AAA   2 llyGppGtGKTllakavakelgve............fleisgsellsk...........................yvgesekkirelfkeakekakpsi 61 
                 +++G  G GKT+   +   e+g+             +  +s+++ + +                           y+ +++   re++ ++  k+  s+
  CCE26617.1 568 IVVGETGSGKTTQLTQYLAEAGFAdkgiigctqprrVAAMSVAKRVAEevgcqlggevgylvrfddctspatrikYMTDGM-LQREILMDMDLKR-YSV 664
                 789*********999999998643344444444344555555555533678888888888888888888888875776665.5566666666665.79* PP

                 EEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSG CS
         AAA  62 lfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrp 112
                 +++DE+++ + +          +v+ +Ll++  + + + + +iv  at + 
  CCE26617.1 665 IMLDEAHERTIAT---------DVLFALLKKAVKRRPDLK-IIVTSATLDA 705
                 ******9986555.........444444444444444322.4444444445 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.3
                  CCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHH CS
         AAA   78 eseeeervvnqLlteldgvkkkeskvivigatnrpdkldpall 120 
                  + + +++v +qL++ ++++k+      vi  + + dk+ +al 
  CCE26617.1 1055 SMNRAKDVRDQLVKIMERYKH-----PVISCGRNTDKIRRALC 1092
                  55678999***********99.....69999999999999997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00049      0.55      20      48 ..     562     588 ..     542     624 .. 0.79
   2 ?   -2.5   0.1       5.2   5.9e+03     134     165 ..     660     691 ..     649     697 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00049
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellral 48 
                  ++  ++++++Ge G+GK++ +++ l ++
  CCE26617.1 562 EEN--QILIVVGETGSGKTTQLTQYLAEA 588
                 333..79*************998887644 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.2
      AAA_16 134 erplvlvlDdlqwadeaslqllaaLlrllesk 165
                 +r  v+ lD+++    a+  l+a+L ++++++
  CCE26617.1 660 KRYSVIMLDEAHERTIATDVLFALLKKAVKRR 691
                 45579999999999999999999998888775 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00028      0.32      11      34 ..     556     579 ..     551     594 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00028
                 HHHHHHHH-SEEEEE--TTSSTTH CS
        PhoH  11 eylealkkndivfaiGpaGtGKty 34 
                 ++++a+++n+i++++G++G+GKt 
  CCE26617.1 556 QIIKAVEENQILIVVGETGSGKTT 579
                 67999*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1100  (0.0613531); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.49
# Mc/sec: 7519.48
//
Query:       CCE26618.1  [L=150]
Description: uncharacterized protein CPUR_00087 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-18   67.3  10.8    1.3e-18   66.9  10.8    1.1  1  Pmp3      Proteolipid membrane potential modulator


Domain annotation for each model (and alignments):
>> Pmp3  Proteolipid membrane potential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9  10.8   7.2e-23   1.3e-18       1      48 [.       5      53 ..       5      54 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 7.2e-23
        Pmp3  1 dillillaiilPPlaValksG.csadllinilLtllgylPgviHAfyii 48
                di+l +lai++PPl+V++k+G csad +inilL++lg+lPg++HA+yii
  CCE26618.1  5 DIFLGVLAILFPPLPVWVKCGiCSADSIINILLCCLGFLPGLVHAWYII 53
                899*********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1055.08
//
Query:       CCE26619.1  [L=469]
Description: uncharacterized protein CPUR_00088 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-119  399.0   0.0   3.2e-119  398.7   0.0    1.0  1  Arb1      Argonaute siRNA chaperone (ARC) complex subunit Arb


Domain annotation for each model (and alignments):
>> Arb1  Argonaute siRNA chaperone (ARC) complex subunit Arb1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  398.7   0.0  1.8e-123  3.2e-119       4     399 ..      63     443 ..      61     444 .. 0.96

  Alignments for each domain:
  == domain 1  score: 398.7 bits;  conditional E-value: 1.8e-123
        Arb1   4 kkkkgkptGFEeyyadppltpaeyeeek.klYdperpfvdRieeaIqryrarRrldserrniFnkYLslGGidttqrqfqGgldkeeleeldkeeiaea 101
                 ++++g  tGFEe++adppltp+e++ee  ++Y +  pf +Ri+ +Iqr+r+rRrl+ ++  +Fn+YL+lGGidt+q+ f G ld+++l++l+ +e+++a
  CCE26619.1  63 PRNRG--TGFEEFFADPPLTPEEAAEESlEVYASCVPFEERIQACIQRFRSRRRLQGDQPVCFNEYLFLGGIDTKQNSFAG-LDNKDLKDLTPAEQRDA 158
                 56677..**************************************************************************.***************** PP

        Arb1 102 tatdvisedkkddsrfydpdd.kwevDFegVakgFLSsklpalvgleeeqvekaidvirnFlnYllqHdVCPEYeddikaArkvCdkAkeElpkiaall 199
                 ta+d+++  + ++++fy++d+ +w+vDF+gVa+gF+S +l +l g+e++++e++i+++++Fl+Y+lqH VCPEY+d++++A++vC++A++E+p+++++ 
  CCE26619.1 159 TARDTVHICSGANEQFYNGDAeNWSVDFAGVAAGFFSISLAQLSGFETQKFETGISIVESFLRYVLQHGVCPEYQDNVQSALRVCQQARQEWPMLRQFG 257
                 *********999*************************************************************************************** PP

        Arb1 200 aklPGdFntAcstlfggaykeyseeeswaeeeeeekglskekakkvfkaavaalgseeqaeklaekaeekkalavveeeeqglevveielpseevkeiy 298
                 + lPG+F+ A+++ f +     se+e w+    ++ ++++++ k+vf a++++ g++e+      +++++ +lav+++  ++++v+++++ps++  +++
  CCE26619.1 258 KDLPGQFSLAAAECFST-----SESEDWSL--LSFTRPEDFDVKAVFLASCTLCGEMET-----VHDYARGKLAVKKQFIRTVKVTDVQRPSDALIDKF 344
                 *****************.....33334433..349*********************994.....556799***************************** PP

        Arb1 299 eelakkekkkklkpvGklvvkpvviewenpsaaeedlakeeekeveflleedilellfvGmklelevceLncglkfidevldvlpsfytflpnelmlgy 397
                 ++l  +  +++++pvGkl+++ +vie e+ +a++ +l+k +   + ++le+ +l+++++Gmk+e++ +eL  g++f+++vl+++psfytflp+++m +y
  CCE26619.1 345 ASLCIQGISRAVEPVGKLYFEDAVIEDERGQAEMPELEKGS--PLWIYLEDRLLANVVPGMKMEIKFVELTTGIRFVKSVLNLVPSFYTFLPQQMMKHY 441
                 *****99888****************999999999998776..9******************************************************* PP

        Arb1 398 Ke 399
                 K+
  CCE26619.1 442 KT 443
                 96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3511.93
//
Query:       CCE26620.1  [L=388]
Description: related to transcriptional regulator ARG82 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-51  174.5   0.0    2.9e-51  174.1   0.0    1.1  1  IPK         Inositol polyphosphate kinase
  ------ inclusion threshold ------
      0.064   13.6   0.5         16    5.9   0.0    2.5  2  ATP-synt_F  ATP synthase (F/14-kDa) subunit


Domain annotation for each model (and alignments):
>> IPK  Inositol polyphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.1   0.0   3.3e-55   2.9e-51       2     196 ..     144     382 ..     143     383 .. 0.94

  Alignments for each domain:
  == domain 1  score: 174.1 bits;  conditional E-value: 3.3e-55
                 EEEE-TTTT-SSEEEEEEEESSSSS-TTSTCHHHHHHHHHHCCSTHHHHSEEEEEEEEEE.......TTTTEEEEEEHHHHC.T-SHHHHHHHHHHCCC CS
         IPK   2 lvLedltagfkkPcvlDvKlGtrtydedaseekrekqqkkskettseslGfrilGmkvyk.......eeedeyltvdkkygr.slskeevkealkkFls 92 
                 +vLe++t+gfk  ++lDvKlG r++++da+++k+ +  k s+ett ++lGfri+Gm+vy+        ++dey+ +dk+ygr ++++++v e +k+F+ 
  CCE26620.1 144 VVLENITYGFKCANILDVKLGVRLWADDAPQQKKDRFTKISSETTHRTLGFRIAGMRVYRgsenaadLDDDEYKVYDKDYGRlTVNEDNVVEEFKRFIF 242
                 79***************************************************************9999999**********999999*********** PP

                 SSS...SCCHHHHHHHCHHHHHHHHHHHHHCSHSEEESSEEEEEEEETT.................................................. CS
         IPK  93 ngk...slrkdakaaskllerLqelkqvlesqeslrfyssSLLfvyegdseaseka..................................eekeaeeee 154
                 n+    s++  +k++++++++L+ + ++l+++++ r+ys SLLfv+egd  a +ka                                  e +e+e e+
  CCE26620.1 243 NKAaniSKDMGQKICEAFIKELEIVDEILSNNDT-RMYSTSLLFVFEGDGVALQKAfdeneaflqlaekqasclqpprrfdsgiafddeeELDESELEN 340
                 99999999999**********************9.**************9999999******************************9875444555555 PP

                 ......SSEEEEEE--TTEEE--TSS--HHHHHHHHHHHHHH CS
         IPK 155 eeeskekkvevklIDFAhvvptesggpDegyllGlksLikil 196
                   e  +k  +vklIDFAh+++ +++gpDe++llG++sL ki+
  CCE26620.1 341 LVEGVPKICSVKLIDFAHASWAPGQGPDENILLGVRSLKKIF 382
                 567788999******************************997 PP

>> ATP-synt_F  ATP synthase (F/14-kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0023        21      48      90 ..     104     148 ..      81     149 .. 0.85
   2 ?    5.9   0.0    0.0018        16       9      50 ..     190     231 ..     180     248 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0023
                 EHHHHCCCHHHHHHCTCSSSSEEEE..ESCSCCGGSHHCHHHHHH CS
  ATP-synt_F  48 tekiaeeirelideykeealPaile..IPskegpydeekdsvrkk 90 
                 +e+i++ +re+i++++ ++lP+  e  IPsk+++ ++ k  v+++
  CCE26620.1 104 KEQIVASVREQIESCHAQPLPVEKEtwIPSKGKKIKTDKAVVLEN 148
                 699**************9999854455999999999888888776 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0018
                 HHHHHHHTTCEEEE.CSSHHHHHHHHHHHHHHTTEEEEEEEHH CS
  ATP-synt_F   9 tvtgfrlaGvgeve.vtdeeeieealkelleredigiilitek 50 
                  ++gfr aG+++++ +++++++ +   +++ ++d+g + ++e+
  CCE26620.1 190 RTLGFRIAGMRVYRgSENAADLDDDEYKVY-DKDYGRLTVNED 231
                 589**********98555666666666666.666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3075.81
//
Query:       CCE26621.1  [L=451]
Description: related to cleavage/polyadenylation factor IA subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-33  114.0   0.0    1.1e-32  113.4   0.0    1.3  1  CLP1_P          mRNA cleavage and polyadenylation factor CLP1
    2.1e-26   92.0   0.0    3.5e-26   91.2   0.0    1.4  1  CLP1_N          N-terminal beta-sandwich domain of polyadenyl
    1.9e-22   79.9   0.0      4e-22   78.8   0.0    1.6  1  Clp1            Pre-mRNA cleavage complex II protein Clp1
    3.3e-05   24.4   0.1    0.00013   22.4   0.0    1.9  2  AAA_16          AAA ATPase domain
     0.0012   18.7   0.0     0.0022   17.8   0.0    1.4  1  ATP_bind_1      Conserved hypothetical ATP binding protein
     0.0039   16.9   1.2     0.0064   16.2   0.2    1.9  2  AAA_30          AAA domain
     0.0067   16.1   0.1      0.065   12.9   0.0    2.1  2  SRP54           SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
      0.023   14.9   0.2       0.18   12.1   0.1    2.4  2  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
       0.04   14.3   0.3       0.59   10.6   0.1    2.3  2  AAA             ATPase family associated with various cellula
       0.06   13.4   0.0      0.088   12.9   0.0    1.3  1  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain
      0.061   12.7   0.0       0.12   11.8   0.0    1.5  1  SRPRB           Signal recognition particle receptor beta sub
       0.09   12.0   1.9       0.17   11.1   0.0    2.4  3  DUF1611         Domain of unknown function (DUF1611_C) P-loop
      0.094   12.4   0.0        8.2    6.1   0.0    2.2  2  IstB_IS21       IstB-like ATP binding protein
       0.12   11.4   0.0       0.19   10.7   0.0    1.2  1  T2SSE           Type II/IV secretion system protein
       0.12   12.1   0.0       0.19   11.5   0.0    1.4  1  AAA_24          AAA domain
       0.12   12.7   0.1       0.31   11.4   0.1    1.6  1  AAA_19          AAA domain
       0.13   11.7   0.0       0.26   10.8   0.0    1.4  1  AAA_7           P-loop containing dynein motor region
       0.14   12.4   0.0       0.25   11.5   0.0    1.4  1  AAA_33          AAA domain


Domain annotation for each model (and alignments):
>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   1.1e-35   1.1e-32       1     187 [.     131     338 ..     131     339 .. 0.94

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 1.1e-35
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGqseispPgtislalverpi.............dveegfsldaplvyffGdtspsdnpslylalvke 86 
                 Gp  +GK+Tl+r+L  ya+r+g +pv+v +D+  +++s+Pg++ +++  + +             ++++ ++ + plvy++G++sp+++++ y +l+  
  CCE26621.1 131 GPAATGKTTLVRTLTSYATRQGFQPVVVSADPKEGMLSLPGSLTASVFATIMdpesvdgwgstptSGPSVVPVKLPLVYYYGHSSPESDIDFYRELTCI 229
                 8999*****************************************999888789999*****99999999***************************** PP

      CLP1_P  87 lareveekleenkkakasgliIntpGwvkgl..gaellleliealepdvvvvldqeellnelkrdlp......lskvkvvklpkspgvvqrsreerrel 177
                 +a +v+ +++e++++++sg+iI+++G  ++   g++ll ++++ + ++++vv+++    ne+++ +       ++ ++v+ l++s g+v+rs++  +++
  CCE26621.1 230 IAGTVSGRFSEDEEVRSSGVIIDSMGVGEDSsvGMDLLAHVVDEMSVNIIVVIGSTTMSNEFSKRFAgeqtslGEPIHVIGLDRSTGAVERSEAFLEHA 328
                 ***************************9864349*********************888888888777666667789*********************** PP

      CLP1_P 178 reerireYFy 187
                 re++i+eYF 
  CCE26621.1 329 REQAIKEYFF 338
                 *********6 PP

>> CLP1_N  N-terminal beta-sandwich domain of polyadenylation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   3.6e-29   3.5e-26       2      92 .]      23     117 ..      22     117 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 3.6e-29
                 E-TTEEEEEEE-SSS-EEEEEEEE--EETTEE--TT-EEEE-TT-EEEEEESS-EEEEEES-EE....EEEEES.--SHHHHHHHHHHHHHHHHHH CS
      CLP1_N   2 LekeselrfeveskeklkikllsGtaEifGtELaknkeytfskgtkfaiftwegcklevkgeae....seyvse.etpmksylnlhlaLeklRqka 92 
                 L++ +e+rf+v+ ++++ +k+lsG+aE +GtELa +++y+f+ g+k++i+tw+gc+le++g++e    ++y s  e+p++s++nlh  L ++R++a
  CCE26621.1  23 LKPFWEWRFQVPIGQTVVLKILSGSAEKDGTELAVQNAYSFT-GIKSKILTWHGCELEIEGQTEeesvATYASPqENPATSHINLHDWLGEMRAAA 117
                 899***************************************.9*****************99989998999998******************875 PP

>> Clp1  Pre-mRNA cleavage complex II protein Clp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0     4e-25     4e-22       1     117 []     345     444 ..     345     444 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 4e-25
                 ---EEEEEETTS-EEEEE-.------------.------TS-EEEE-.--GGGTTEEEEEESSSS....TCCTT--EEEEEEEEEEETTTTEEEEEESS CS
        Clp1   1 LsPysitvdfddlsiyrvgeeeaapssalPigeeekeseetklekveepsselqnsilavsqasakdseeevldssvlGFvyVtevdeekkkltvLsPv 99 
                 L P  ++v+f++l iy+        s++ P +       +  l++ + pss +q+++lav++as +d ++ v+ s+v+GFvyV++vdeek+++++L+Pv
  CCE26621.1 345 LCPQIQQVEFESLVIYKA-------SECPPGE-------QSSLTRHD-PSSLMQHWTLAVMHASLEDAPDVVRASTVMGFVYVSDVDEEKRRVKLLAPV 428
                 789**************4.......5666655.......45788886.78************************************************* PP

                 SS.-S-SEEEEEEEE--- CS
        Clp1 100 pgrlpskalilgslkwpe 117
                  gr+ +++l++g+  wpe
  CCE26621.1 429 GGRIDNRPLVFGR--WPE 444
                 *************..997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.3e-07   0.00013      24      58 ..     123     160 ..     110     192 .. 0.75
   2 ?   -1.3   0.0       2.5   2.5e+03      78     134 ..     342     396 ..     285     401 .. 0.60

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.3e-07
      AAA_16  24 p.elvllsGesGvGKsslvrellralekd..ggiflrg 58 
                 + + vl+ G++++GK++lvr+l  +++++    +++++
  CCE26621.1 123 EgPRVLVAGPAATGKTTLVRTLTSYATRQgfQPVVVSA 160
                 2489*******************999999332444544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.5
      AAA_16  78 reellrqlldeaesaeleawrekleeala..................avpelagaeasrllellkrllallsrde 134
                 r +l+ q+                    +                  ++++l++ ++s+l ++++ +++ +s ++
  CCE26621.1 342 RTTLCPQI--------------------QqvefeslviykasecppgEQSSLTRHDPSSLMQHWTLAVMHASLED 396
                 22333333....................13333333344444444446777777777888888888877776655 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.2e-06    0.0022       1      34 [.     129     162 ..     129     170 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.2e-06
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDP 34 
                 v+Gpa  GKtt+v++l+++++ +g ++ vv  DP
  CCE26621.1 129 VAGPAATGKTTLVRTLTSYATRQGFQPVVVSADP 162
                 89*****************************999 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   6.4e-06    0.0064       7      53 ..     115     160 ..     110     176 .. 0.84
   2 ?   -2.5   0.1       3.6   3.6e+03      93     100 ..     270     277 ..     246     336 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.4e-06
      AAA_30   7 aaavealltsgdrvavltGpAGtGKttalkalreaweaag.grviglA 53 
                 aaa+++ +++++  +++ GpA tGKtt++++l+  ++++g ++v++ A
  CCE26621.1 115 AAAAREKCEGPR--VLVAGPAATGKTTLVRTLTSYATRQGfQPVVVSA 160
                 577888888887..8999*********************945566555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.6
      AAA_30  93 ivDEagmv 100
                 +vDE+++ 
  CCE26621.1 270 VVDEMSVN 277
                 45555443 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   6.5e-05     0.065       4      38 ..     127     161 ..     125     163 .. 0.95
   2 ?    0.6   0.0      0.37   3.7e+02      79     131 ..     241     292 ..     229     302 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.5e-05
                 EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkegkkvllvaaD 38 
                 +l++G+  +GKTt +  L  + +++g ++++v+aD
  CCE26621.1 127 VLVAGPAATGKTTLVRTLTSYATRQGFQPVVVSAD 161
                 7899******************************9 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.37
                 HHHTTSSEEEEEE--SSTTHHHHHHHHHHHHHHHSSSEEEEEEETTBHTHHHH CS
       SRP54  79 akeekidvvlvDTaGrlqndkelmeelkkikkvvkpdevllvldattgqeavk 131
                  +e +   v++D+ G  +  +  m+ l+++ + + + ++++v+ +tt ++ ++
  CCE26621.1 241 DEEVRSSGVIIDSMGVGEDSSVGMDLLAHVVDEM-SVNIIVVIGSTTMSNEFS 292
                 5555667799*****9999999999999999998.567777777777766654 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00018      0.18      23      69 ..     245     294 ..     166     320 .. 0.83
   2 ?   -0.7   0.0       1.6   1.6e+03      73      97 ..     400     424 ..     338     431 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
                     T--EEEEEEBTTTB--HHHHHHHHHHHTT...T-EEEEEESSSBS----- CS
  Asparaginase_C  23 gakGvvlegtGvGnlpsallealkeakar...givvvatsqcpsgsvsns 69 
                     +  Gv++ ++GvG  +s+ +++l+ ++++   +i+vv+ s ++s  +s+ 
      CCE26621.1 245 RSSGVIIDSMGVGEDSSVGMDLLAHVVDEmsvNIIVVIGSTTMSNEFSKR 294
                     678**************999999999988777899999999998887766 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.6
                     ...HHHHHTEEE-TT--HHHHHHHH CS
  Asparaginase_C  73 agkelerlgvisaddmtpeaarikL 97 
                     + ++   +g+++  d+  e+ r+kL
      CCE26621.1 400 VVRASTVMGFVYVSDVDEEKRRVKL 424
                     4445556778888888888888887 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00059      0.59       1      23 [.     127     149 ..     127     179 .. 0.83
   2 ?    1.3   0.0      0.43   4.3e+02      80     117 ..     258     293 ..     243     300 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00059
                 EEEESSTTSSHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelg 23 
                 vl+ Gp  tGKT+l++ + + + 
  CCE26621.1 127 VLVAGPAATGKTTLVRTLTSYAT 149
                 799*************9988864 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.43
                 HHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTH CS
         AAA  80 eeeervvnqLlteldgvkkkeskvivigatnrpdkldp 117
                 e+++  ++ L +++d+++   + ++vig t+  +++++
  CCE26621.1 258 EDSSVGMDLLAHVVDEMSV--NIIVVIGSTTMSNEFSK 293
                 4666778888899999999..56899999988877766 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.8e-05     0.088      10      65 ..     135     273 ..     127     330 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.8e-05
                 SSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH.......HTTEB-HHHH............................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxx............................................... RF
        CbiA  10 vGKTtlaanLaralarrglrVllvDaDpqannlai.......leglendiep............................................... 54 
                 +GKTtl+ +L  +  r+g++ ++v aDp   +l++       ++ + +d e                                                
  CCE26621.1 135 TGKTTLVRTLTSYATRQGFQPVVVSADPKEGMLSLpgsltasVFATIMDPESvdgwgstptsgpsvvpvklplvyyyghsspesdidfyreltciiagt 233
                 8****************************9999866554444444444444477777777777777777777777777777777777777777777777 PP

                 .............................CCHCCCHHHHH CS
                 .............................xxxxxxxxxxx RF
        CbiA  55 .............................dlkrllellea 65 
                                              +++ l  ++ +
  CCE26621.1 234 vsgrfsedeevrssgviidsmgvgedssvGMDLLAHVVDE 273
                 7777777777777777777666666444444444444433 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.12       4      30 ..     125     151 ..     122     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
                 -EEEEE-STTSSHHHHHHHHHHSS--- CS
       SRPRB   4 pavllvGlsdsGKTslftrLttdsvkk 30 
                 p+vl++G+  +GKT+l   Lt+ ++++
  CCE26621.1 125 PRVLVAGPAATGKTTLVRTLTSYATRQ 151
                 89******************9986554 PP

>> DUF1611  Domain of unknown function (DUF1611_C) P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00017      0.17       5      51 ..     117     162 ..     112     179 .. 0.86
   2 ?   -1.9   0.3       1.7   1.7e+03      59     102 ..     247     290 ..     243     297 .. 0.83
   3 ?   -3.4   0.0       4.7   4.7e+03      13      44 ..     304     335 ..     286     346 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
     DUF1611   5 gkarevkakrvlvvGTdcavGKrttaleleealeerGlkaafvaTgq 51 
                 +  ++++++rvlv G   a+GK t  ++l+  ++++G++  +v+ ++
  CCE26621.1 117 AAREKCEGPRVLVAGP-AATGKTTLVRTLTSYATRQGFQPVVVSADP 162
                 34446**********6.79*********************9999886 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
     DUF1611  59 egvvldavvvdfvaGaveglvkkaaeeeepdlilveGQgsLthp 102
                 +gv++d++ v   ++  ++l   + +e + ++i+v G + ++++
  CCE26621.1 247 SGVIIDSMGVGEDSSVGMDLLAHVVDEMSVNIIVVIGSTTMSNE 290
                 78999999999999999999999998899999999998888775 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.7
     DUF1611  13 krvlvvGTdcavGKrttaleleealeerGlka 44 
                 + + v+G d ++G    + +  e ++e+ +k 
  CCE26621.1 304 EPIHVIGLDRSTGAVERSEAFLEHAREQAIKE 335
                 45677777777776666666666666666655 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0083       8.2      50      77 ..     127     154 ..     120     161 .. 0.89
   2 ?    3.9   0.0     0.039        39     108     160 ..     245     297 ..     236     303 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0083
   IstB_IS21  50 ivllGpsGvGKshlaialgveavragls 77 
                 +++ Gp+ +GK+ l  +l   a r+g++
  CCE26621.1 127 VLVAGPAATGKTTLVRTLTSYATRQGFQ 154
                 7899*********************986 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.039
   IstB_IS21 108 kvdllilDdlgllpldqaeaellfeviekryerrsiiitsnlpfaewdevlgd 160
                 +++ +i+D +g+ + ++    ll +v+++   +  ++i s    +e+++ ++ 
  CCE26621.1 245 RSSGVIIDSMGVGEDSSVGMDLLAHVVDEMSVNIIVVIGSTTMSNEFSKRFAG 297
                 66679*************************************99999998874 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00019      0.19     131     169 ..     126     165 ..     103     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
       T2SSE 131 lilvsGgTgsGKttllyallkeinks.derivtvEDpvEi 169
                  +lv+G+  +GKttl+ +l ++   +  + +v+  Dp E 
  CCE26621.1 126 RVLVAGPAATGKTTLVRTLTSYATRQgFQPVVVSADPKEG 165
                 58***************99998887755667777777775 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00019      0.19       2      23 ..     124     152 ..     123     254 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
      AAA_24   2 klkiliyGpsgiGKTtlakel.......g 23 
                 + ++l+ Gp+ +GKTtl+++l       g
  CCE26621.1 124 GPRVLVAGPAATGKTTLVRTLtsyatrqG 152
                 5799****************966666664 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00031      0.31       4      40 ..     117     154 ..     114     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00031
      AAA_19   4 ave.alkekvllvtaGpGtGKTrvlkhivallvelggv 40 
                 a++ +++ + +lv +++ tGKT+++++  +++ ++g +
  CCE26621.1 117 AAReKCEGPRVLVAGPAATGKTTLVRTLTSYATRQGFQ 154
                 55558889999999999*********999998888754 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00026      0.26      35      68 ..     126     159 ..     121     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltin 68 
                  vl+ Gp+ tGKt+++++l++   ++ +++++++
  CCE26621.1 126 RVLVAGPAATGKTTLVRTLTSYATRQGFQPVVVS 159
                 69****************9999999999988775 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00025      0.25       2      31 ..     127     161 ..     127     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00025
      AAA_33   2 vllvGlpGsGKstlaerllkklg.....avllssd 31 
                 vl+ G++++GK+tl++ l    +      v++s d
  CCE26621.1 127 VLVAGPAATGKTTLVRTLTSYATrqgfqPVVVSAD 161
                 7899************9954333333666777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3167.95
//
Query:       CCE26622.1  [L=1021]
Description: probable Na+-transporting ATPase ENA-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-37  128.6  21.9    1.4e-32  112.6   0.3    4.3  4  E1-E2_ATPase     E1-E2 ATPase
    6.4e-29  101.0   3.7    6.4e-29  101.0   3.7    2.0  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    5.3e-19   69.3   0.2    6.5e-15   56.0   0.0    2.7  2  Hydrolase        haloacid dehalogenase-like hydrolase
    1.6e-16   59.7   0.1      4e-16   58.4   0.1    1.7  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    2.4e-13   50.0   0.0    5.2e-13   48.9   0.0    1.6  1  Cation_ATPase    Cation transport ATPase (P-type)
      2e-06   27.8   0.2    7.7e-05   22.6   0.3    2.2  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
        0.1   12.6   0.4       0.29   11.1   0.4    1.7  1  p6               Histone-like Protein p6


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.7      0.11   2.9e+02     113     145 ..      96     128 ..      77     141 .. 0.72
   2 !  112.6   0.3   5.6e-36   1.4e-32       2     125 ..     156     294 ..     155     301 .. 0.94
   3 !   24.6   4.8   5.7e-09   1.5e-05     108     180 ..     302     372 ..     289     373 .. 0.90
   4 ?    0.6   0.1      0.14   3.6e+02      92     164 ..     748     821 ..     743     824 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.11
                   HHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT CS
  E1-E2_ATPase 113 kkldklgkvlvpvvlliallvflialllgksla 145
                     l+++++ l++v +++a++ ++i  ++++s++
    CCE26622.1  96 ILLQQVANALTLVLIAVAIISYVIGDIVEGSVV 128
                   567788888888888888888888877777663 PP

  == domain 2  score: 112.6 bits;  conditional E-value: 5.6e-36
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-..............G-TTEE-TT-EEEE-EEEE CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek..............ekgdmvfsGtvvvsgeaka 83 
                   l++p++kvirdg +++++a+ +v GD+v l +gd+vpaD r+v+g + + de++LTGEs+++ k              ++ + vfsG++v++g+a++
    CCE26622.1 156 LSSPKCKVIRDGHVDTVKAETIVKGDLVSLATGDVVPADLRLVQGVNiSTDEAHLTGESVAINKnpdavftepdmpvgDRINLVFSGSSVTRGRATG 252
                   7899********************************************************************************************* PP

                   EEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  84 vVtatgedtelgkiarlveeakskktplqkkldklgkvlvpv 125
                   +V+ tg+ te+g+ia+l++++k++ +   ++ + l k++ +v
    CCE26622.1 253 IVISTGMATEVGQIAELLRNKKREVKGNSRFTRVLYKFYQTV 294
                   **********************88888888888777777665 PP

  == domain 3  score: 24.6 bits;  conditional E-value: 5.7e-09
                   --HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 108 ktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrlak 180
                    tplq  l+k++  l+ +++l++++vf ++++  ++  eall ++ + va+iP+ L +++++++a++++++ k
    CCE26622.1 302 GTPLQVTLSKFALLLFGLAILLVVIVFSVNVWDIDD--EALLYGICVGVAVIPESLLAVLTVTMAVATKAMVK 372
                   689**************************9776666..9******************************9976 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.14
                   STTTTTSTTS--------HHHHHHHHHHHH.HHHHHHHHHHHHHHS-STTTSSTTHHHHH.HHHHHHHHS-TTHH CS
  E1-E2_ATPase  92 telgkiarlveeakskktplqkkldklgkv.lvpvvlliallvflialllgkslaeallr.alallvaaiPcaLp 164
                     ++ i+++++e ++   ++qk+l  l    l+ v ll++ l+f  +  +  ++  + l+   a lv + P aL+
    CCE26622.1 748 DNFASIVTAIKEGRRLSDNIQKFLLHLLTSnLAQVLLLLIGLAFQDTEQMSVFP-LSPLEiLWANLVTSSPLALG 821
                   567899999999999999999998776666266555555555554333333333.44444366667777777665 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4         2   5.2e+03     127     143 ..     312     328 ..     299     335 .. 0.57
   2 !  101.0   3.7   2.5e-32   6.4e-29       3     181 ..     801    1002 ..     799    1003 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2
  Cation_ATPase_C 127 llllaillslllqvliv 143
                      ++ll + l++ll+v++ 
       CCE26622.1 312 FALLLFGLAILLVVIVF 328
                      44444444444444433 PP

  == domain 2  score: 101.0 bits;  conditional E-value: 2.5e-32
  Cation_ATPase_C    3 plsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltll............lfgiseke 82  
                       pls++ iLw nLvt + +al L+le++++di++rpPr+ +  +++  ++r+ l++g+++++++l+ f+l+++            +       
       CCE26622.1  801 PLSPLEILWANLVTSSPLALGLGLEEAQPDILQRPPRSLQSGIFTVDLVRDQLMYGTFMGILCLASFMLVAFtssglglhglppG------- 885 
                       9**********************************************************************95555554443332....... PP

  Cation_ATPase_C   83 nkls..........snyaqtmaFitlvlsqifnalnlrsrreslfkfsglf...........snkllllaillslllqvlivyvpglna.vf 152 
                                     + +a++++F tl ++ ++ a+ +++ ++slf + + +            n++l++++++ +l ++l++y+p++n+ vf
       CCE26622.1  886 ---CndgtnddclpVLRARATTFATLCFLLLVTAWEVKHFHRSLFAMDSRWtgpfsvfrtiyYNTFLFWSVVAGFLATFLVIYIPFVNKrVF 974 
                       ...03333444455****************************666655544333333333337777*******************9986269 PP

  Cation_ATPase_C  153 gtaplsleewlialllalvvllvdelvKl 181 
                       + + l  +ew+i++++++ ++ ++e++K 
       CCE26622.1  975 KHSGL-TWEWAIVVGCVVTYVGLVEMWKA 1002
                       99999.678******************97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00023      0.59       4      25 ..     392     413 ..     389     433 .. 0.89
   2 !   56.0   0.0   2.5e-18   6.5e-15      84     210 .]     580     724 ..     527     724 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00023
                 EEEESBTTTBCHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   4 vvfDkdGTLttgepsvedvivs 25 
                 ++ Dk+GTLt+g++  ++v+ +
  CCE26622.1 392 ICSDKTGTLTQGRMITRKVWLR 413
                 899**************99975 PP

  == domain 2  score: 56.0 bits;  conditional E-value: 2.5e-18
                 HHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT...............GGGESEEEEHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxx RF
   Hydrolase  84 pdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG...............ddyfdaviasd 167
                 + +  ++++ q++++ +  l  r l++  + dp  ++pe+  av++ ++ag+ v ++tgd+ +ta ++a ++G               +  f +  +  
  CCE26622.1 580 KVMSGNMEDFQDRAKVESNL--RFLGLAGLYDP--PRPETFGAVQQCHEAGVMVHMVTGDHITTATSIAYEVGilsgdahltpttvmsAADFGNMTDDQ 674
                 44556678888888899999..***********..**************************************99999999988887766665555555 PP

                 CES.......STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 168 iet.......vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 i++       +a  sp  kv++i+ L  +++ ++m GDgvnD++al++A+
  CCE26622.1 675 IDAleslplvIARCSPLTKVRVIKALHRRKAFCVMTGDGVNDSPALKQAD 724
                 55578889999999*************99********************8 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.1   1.6e-19     4e-16       1      69 []      48     116 ..      48     116 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 1.6e-19
  Cation_ATPase_N   1 ehalsleevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69 
                      +h++s++ v+ekL +dl +GL+++eaa+rl + G N++k +k  sl+++ll+q+ n l+++L+++a++s
       CCE26622.1  48 FHTQSAQRVAEKLASDLDHGLSDEEAAARLVRDGANVIKGPKNLSLCKILLQQVANALTLVLIAVAIIS 116
                      599****************************************************************98 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0     2e-16   5.2e-13       2      87 ..     454     549 ..     453     552 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2e-16
  Cation_ATPase   2 lcNsaaf..............sensekdevkllGnktEsALlvlaeklgldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApei 83 
                    lcN++a+              +  se  ++k++G++tE+AL v+a ++g+ t    ++     e pF+ss K+msvv+ ++ ek+ r+y+KGA e+
     CCE26622.1 454 LCNNSAVsdgkkylgadsssvTTASEPVNWKAVGEPTEIALKVFALRFGITT----SSDVLTTEHPFDSSCKMMSVVYGTSLEKERRVYTKGAVEV 545
                    899999989999999999998999999*********************5443....34455589*******************************9 PP

  Cation_ATPase  84 ilkr 87 
                    ++ +
     CCE26622.1 546 LMTK 549
                    9865 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.035        90      18      54 ..     613     649 ..     609     655 .. 0.89
   2 !   22.6   0.3     3e-08   7.7e-05     195     255 .]     696     757 ..     692     757 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.035
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCC CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgl 54 
                  ++t  a+++++e+g+ v   TG +++++ +++ e+g+
   CCE26622.1 613 PETFGAVQQCHEAGVMVHMVTGDHITTATSIAYEVGI 649
                  678889********************99999988875 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 3e-08
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETT.S-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmgn.aseevkkaAdyvtksnnedGVakal 255
                  ++k l   ++ ++  GDg ND + L++a++g+Amg+ +s+ +k+a+d+v ++ n  +++ a+
   CCE26622.1 696 VIKALHRRKAFCVMTGDGVNDSPALKQADVGIAMGDrGSDVAKEASDMVLTDDNFASIVTAI 757
                  56778888888999********************9648999999999999999989988876 PP

>> p6  Histone-like Protein p6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   0.00011      0.29      12      41 ..     361     390 ..     356     397 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
          p6  12 ttvnvakmvmvdgevqveqlpsetfvgnlt 41 
                  t+ va   mv g+v v q+ps   vg +t
  CCE26622.1 361 VTMAVATKAMVKGNVIVRQMPSLEAVGGVT 390
                 6899******************99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 6953.41
//
Query:       CCE26623.1  [L=185]
Description: uncharacterized protein CPUR_00092 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1462.10
//
Query:       CCE26624.1  [L=1030]
Description: uncharacterized protein CPUR_00093 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.5e-107  359.4   2.1   9.3e-107  358.0   1.2    1.9  2  ArAE_2_N  Putative ER transporter, 6TM, N-terminal
    1.9e-48  165.3   2.6    1.2e-47  162.6   0.1    2.8  4  ArAE_2    Aromatic acid exporter family member 2
    2.4e-09   37.4  16.5    2.4e-09   37.4  16.5    4.4  5  FUSC_2    Fusaric acid resistance protein-like
  ------ inclusion threshold ------
       0.07   12.4   0.0       0.13   11.6   0.0    1.3  1  MPS2      Monopolar spindle protein 2


Domain annotation for each model (and alignments):
>> ArAE_2_N  Putative ER transporter, 6TM, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.0   1.2  2.1e-110  9.3e-107       3     458 ..      24     479 ..      22     492 .. 0.87
   2 ?   -0.5   0.0      0.11   4.9e+02     218     303 ..     800     889 ..     784     910 .. 0.65

  Alignments for each domain:
  == domain 1  score: 358.0 bits;  conditional E-value: 2.1e-110
    ArAE_2_N   3 kpawlldhldlrsfKvifRswvavwvaiiLmvipptarwlGtaayLllivsvivpsGggsvivfilialllllgiclawawaviamkianrarpdaitq 101
                 +p wl  h+ ++++K+ fR+wvavw++i+L++i+p+++++G+++++++iv +ivp+ +g+++v++l++++ll+g+clawaw+++amk+a ++r d + q
  CCE26624.1  24 LPLWL-RHFGRNELKITFRCWVAVWISILLVFINPSLQNIGQSTFFAAIVVFIVPP-AGILMVYLLASISLLVGMCLAWAWGLLAMKAAFAVRSDDEMQ 120
                 699**.**************************************************.**************************************7777 PP

    ArAE_2_N 102 arlaqllieeglcantsgaelaacaqeqvydgkmltarvsvvyavllcvflffvgrlrakspkfalgaifgiIaadvfltyapmlPlfapgtlglallk 200
                   l++l+++++++an++g+ +aa+  ++vydg+ l+arv ++y+v+ cvf+++++rlr ++ kf+l ++ g+I +dvfl  +p+l   ++ +l+ +l+k
  CCE26624.1 121 RLLQSLQQQAVAIANQTGQPAAAISAKLVYDGFLLDARVVAIYYVMSCVFIYLLARLRYANAKFILLQVLGTITIDVFLLTGPILSH-FKASLAQVLVK 218
                 77888888888999************************************************************************9.9********** PP

    ArAE_2_N 201 PmgiglalkvvvsllifPttssfqvlktmlkllkllkkalkfnsnflatlepsnesewlnfkklekditkirslypkleaelaflplEfsigrfsaedv 299
                 P+ ig+al+v++s+lifP+++s+++l +m+kl++ll+ +l+ +++ la+   s+++e      l++ +  i + ++++e++laflpl+fs+gr++a+dv
  CCE26624.1 219 PAVIGVALGVACSILIFPQSTSYVLLSEMEKLIRLLEAPLESTRRLLAADPLSDDAE------LQTFKGAIVGTFKVMEPALAFLPLDFSRGRWNADDV 311
                 ************************************************999988775......8899999999************************** PP

    ArAE_2_N 300 kelrstlrrlissiagLvyfydlleelravil...............kserssklaanghakldseieekk.revgayetkksielleardaqrsltls 382
                 k+l   +r  ++++  L++f++++ + +a +                +s  + k  +++++++d +  +k+ r+ +  + + s  +l  ++++++++ +
  CCE26624.1 312 KSLHARVREAATASLFLLNFHISRGSTTAQMErlgtsmavkaanstpSSRDTPKTDDHEAQDQDHQPADKEsRPPASSNGSGSTFGLV-DAMKSPEHSA 409
                 ***************************9977788877777655444322222222222333333333333344444444444444444.39******** PP

    ArAE_2_N 383 dldeviealrelsgeileaveegletivewleaanefRiyslalpwnakkhkekq.keaaaeleeaketlekaledf 458
                  + ++ eal+  ++ +l+ ++ +++ ++e ++++n  R+  +a ++++ +h++ + +e++a+l++a+e+       +
  CCE26624.1 410 IRPGLLEALQAATADVLQVNSRAIQLAAETVHLVNTSRWHLSASSKARLEHLQPElVEMQARLQTAREA-------C 479
                 **************************************9988888888888654425666666666654.......4 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.11
    ArAE_2_N 218 Pttssfqvlktmlkllkllkkalkfnsnflatlepsnese....wlnfkklekditkirslypkleaelaflplEfsigrfsaedvkelr 303
                 P + +++v k+++++++ l+    + ++  +    ++ ++     +   + ek+  k+++ +  l  + ++l++E+s + f+ + ++  r
  CCE26624.1 800 PPSATRYVCKSLSNHVGTLNDHYALLISQWEIHPNQHHQQpnagVAAAAAAEKISLKLTEDLMGLTDAISLLKIEISTTPFDQAILQRTR 889
                 556666666666666666665555444444333333333344563344678888889999999999999999999999998887777655 PP

>> ArAE_2  Aromatic acid exporter family member 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.042   1.9e+02      57     108 ..     283     334 ..     260     355 .. 0.76
   2 ?   -3.7   0.0       1.9   8.3e+03      84     107 ..     453     476 ..     443     512 .. 0.73
   3 ?   -3.4   0.2       1.5   6.7e+03      88     118 ..     527     555 ..     522     566 .. 0.74
   4 !  162.6   0.1   2.8e-51   1.2e-47       1     229 []     798    1016 ..     798    1016 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.042
      ArAE_2  57 vleklaglkgllvllkfElslkGrwpskkyarlqalvsel.vqllarLlvvlk 108
                 ++ +   +++ l+ l +++s +Grw++   + l+a v+e  ++ l+ L + ++
  CCE26624.1 283 IVGTFKVMEPALAFLPLDFS-RGRWNADDVKSLHARVREAaTASLFLLNFHIS 334
                 5667778999999*******.*********99998776641455666665555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.9
      ArAE_2  84 kkyarlqalvselvqllarLlvvl 107
                 ++ arl +l+ elv++ arL+++ 
  CCE26624.1 453 SSKARLEHLQPELVEMQARLQTAR 476
                 455788888888888888887764 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.5
      ArAE_2  88 rlqalvselvqllarLlvvlkrlepeewlkr 118
                 +  a+++++v  la+Ll++ +r   + wl++
  CCE26624.1 527 NAAATTEQVVYYLAQLLALRNRT--RLWLPT 555
                 5567899999999**99999988..677764 PP

  == domain 4  score: 162.6 bits;  conditional E-value: 2.8e-51
      ArAE_2    1 PrPksakrlvrktlaktlselgdlyckvlsfaaerlenphihikae...rdqirkkilevleklaglkgllvllkfElslkGrwpskkyarlqalvs 94  
                  P+P+sa+r v+k+l++ + +l d+y++++s ++ + +++h + +a    ++   k++l+++e l+gl+  ++llk E+s + +++++ ++r  + + 
  CCE26624.1  798 PKPPSATRYVCKSLSNHVGTLNDHYALLISQWEIHPNQHHQQPNAGvaaAAAAEKISLKLTEDLMGLTDAISLLKIEIS-TTPFDQAILQRTRDRCY 893 
                  9********************************97777777776667667889999***********************.***************** PP

      ArAE_2   95 elvqllarLlvvlkrlepeewlkrllrrvglldpeliadvlavlsmasqaLktGdpLPeilpapLvkrhlellrkqlkleeseeeadslaealslel 191 
                  +++q+l++Llv+++ l p+++  rl +++gl +++ +++v  vl +++++L+tG pLPe lp pLv  ++  ++++++++e           ls+el
  CCE26624.1  894 TMNQALGKLLVLSAHL-PQHLRLRLGQNTGLVEDKSVSNVTCVLRIVESSLRTGAPLPERLPVPLVETCFLAWNRHHEKAE-----------LSVEL 978 
                  ****************.****************************************************************...........***** PP

      ArAE_2  192 lrsedgrrfivalsialkildrlDelvlvvKglvGEky 229 
                  +rs+++r+++va+s++l++l++lD+lv  +K  vGE +
  CCE26624.1  979 VRSQEYRQYCVAVSAYLSFLATLDDLVGDLKVTVGETH 1016
                  ************************************97 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   4.0      0.82   3.7e+03      48      88 ..      67      85 ..      30     114 .. 0.44
   2 ?   -4.6   8.3         4   1.8e+04      47     125 ..     143     232 ..     131     234 .. 0.58
   3 ?   -0.5   0.3      0.28   1.2e+03      40      54 ..     221     235 ..     204     244 .. 0.81
   4 ?   -1.0   0.1      0.39   1.7e+03      56      99 ..     629     652 ..     616     661 .. 0.55
   5 !   37.4  16.5   5.5e-13   2.4e-09       8     127 .]     658     794 ..     644     794 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.82
      FUSC_2 48 vlallllyllpgnlalallvfllvfliafflkrnyalafif 88
                ++a+++++++p                        ++ +++
  CCE26624.1 67 FFAAIVVFIVPP----------------------AGILMVY 85
                111111111111......................1111111 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 4
      FUSC_2  47 avlallll..yllpgnlalallvfllvfliafflkrny.alafifltllalllyslaagsgnpie.........ialhRlldvliGilial 125
                 a+ a l++  +ll++ ++++  v+ +vf++ + +  +y  + fi+l +l ++++++   +g+  +         ++   ++ v++G+++++
  CCE26624.1 143 AISAKLVYdgFLLDARVVAIYYVMSCVFIYLLAR-LRYaNAKFILLQVLGTITIDVFLLTGPILShfkaslaqvLVKPAVIGVALGVACSI 232
                 5666666666899999999999999999985554.44424455555555555444443233333344444443344445666666666665 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.28
      FUSC_2  40 ilGtvlGavlallll 54 
                 ++G++lG+++++l++
  CCE26624.1 221 VIGVALGVACSILIF 235
                 789999999998876 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.39
      FUSC_2  56 llpgnlalallvfllvfliafflkrnyalafifltllalllysl 99 
                 + pg                      yal+++++t+ + + +sl
  CCE26624.1 629 FNPG--------------------GVYALRMVVVTIAVAIPASL 652
                 2222....................23566666666666555555 PP

  == domain 5  score: 37.4 bits;  conditional E-value: 5.5e-13
      FUSC_2   8 llglwrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgn...lalallvfllvfliafflkrny.......alafifltllalll 96 
                 ++  ++g+Wali+a  +l +++++ ++ +v R lGtv+G vl++l++y+++g+    ++ +  +++v+   ++++r y       a ++++ t+++++ 
  CCE26624.1 658 FFYRQKGIWALIMAQTCLLMYMADFTFSLVSRCLGTVIGGVLGMLAWYVGSGSgdgNPYGMGAATAVLAVVLMWWRLYlppalaqASIMTAATFMLIIG 756
                 34459*******************************************999855675555555555555555555555557666666666677777777 PP

      FUSC_2  97 yslaagsgnpie.........ialhRlldvliGiliallv 127
                 +s   + ++ ++         +++ Rl+ vl+G++ a++v
  CCE26624.1 757 FSW--DEHHIVQyglpgvgyqAFWKRLVLVLVGAAAAFIV 794
                 776..4444444788888888****************996 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.8e-05      0.13     189     290 ..     810     916 ..     804     924 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.8e-05
        MPS2 189 eLkkrlseykekYellqrefslykarrveksqnslktaikheviisElkrklqeqteiisilkeqiqreeGa...sqskr..krlhddgigstknlila 282
                  L ++++++++ Y+ll  +++++ +++ ++ + ++ +a   e i   l   l   t++is lk  i + +      q  r      ++  g +  l + 
  CCE26624.1 810 SLSNHVGTLNDHYALLISQWEIHPNQHHQQPNAGVAAAAAAEKISLKLTEDLMGLTDAISLLKIEISTTPFDqaiLQRTRdrCYTMNQALGKLLVLSAH 908
                 58899****************9999888888899999999************************99876543333343441144556777777777778 PP

        MPS2 283 lpknlvlk 290
                 lp++l l+
  CCE26624.1 909 LPQHLRLR 916
                 88777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1030 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1026  (0.0572257); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 6902.85
//
Query:       CCE26625.1  [L=714]
Description: related to Streptococcus M protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-13   50.6  14.5    1.8e-13   50.0   0.7    3.7  3  NUC153        NUC153 domain


Domain annotation for each model (and alignments):
>> NUC153  NUC153 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   1.2     0.043   7.8e+02       1      13 [.      17      29 ..      17      31 .. 0.75
   2 !    8.0   0.5   0.00014       2.6       1      13 [.      42      54 ..      42      54 .. 0.97
   3 !   50.0   0.7     1e-17   1.8e-13       1      29 []     656     684 ..     656     684 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.043
      NUC153  1 DpRFkalFedhdF 13
                D+RF+ + +d+ F
  CCE26625.1 17 DERFASFETDPRF 29
                8888887777776 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00014
      NUC153  1 DpRFkalFedhdF 13
                D RF+ + ed+dF
  CCE26625.1 42 DKRFAGMLEDEDF 54
                99**********9 PP

  == domain 3  score: 50.0 bits;  conditional E-value: 1e-17
      NUC153   1 DpRFkalFedhdFaIDptspeFkktnpmk 29 
                 D+RFka+F++h+FaIDp++p+Fk t +mk
  CCE26625.1 656 DDRFKAVFDSHEFAIDPSNPKFKGTSGMK 684
                 9**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1993  (0.111161); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                        60  (0.00334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.52u 0.38s 00:00:01.90 Elapsed: 00:00:00.61
# Mc/sec: 3498.90
//
Query:       CCE26626.1  [L=200]
Description: uncharacterized protein CPUR_00095 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00068   19.7   2.0    0.00093   19.2   2.0    1.2  1  DUF4267   Domain of unknown function (DUF4267)


Domain annotation for each model (and alignments):
>> DUF4267  Domain of unknown function (DUF4267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   2.0   5.2e-08   0.00093       3      89 ..      39     122 ..      37     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.2e-08
     DUF4267   3 altalGllallrPeeaaasFGlppdssvkdsaaanalialkGvRdlalGlallvlsl...qgnrralgvvlllgavvglgDalivwrqgg 89 
                 + ++ Gl  ++ P+  +a+F lp       s+ a  +  l+GvRd++lG +++++ +      +ralg++l + ++ +++  ++v   g+
  CCE26626.1  39 LHLLRGLALFTFPAFVLAGFALPK------SNSAFFFTSLLGVRDIVLGGLVAIADArrgYEVQRALGIALFSDSIDTFVLIFVVACSGN 122
                 567889*****************5......46677777*****************99666667779999987777777766666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1459.07
//
Query:       CCE26627.1  [L=542]
Description: uncharacterized protein CPUR_00096 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.058   13.7   0.0       0.12   12.7   0.0    1.4  1  RGS            Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.4e-06      0.12      23     111 ..     384     531 ..     374     534 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.4e-06
                 TCTHHHHHHHHHHHHHTS...................SHHHHHHHHHHHHHHHHTSTTSTTSS.TS-HHHHHHHHHHHCSS.................. CS
         RGS  23 fseenlsFwlaveefkka...................keqeelkkkakeIyneylapsspkel.nidkklreelekrleke.................. 83 
                 fs en++F+  v +++++                     ++e  + a  Iy  ++ p s++   n++++ +++l++ ++++                  
  CCE26627.1 384 FSGENIAFLTRVRQWRAQytfgtaktgkcesdsaitlVLSRESYESALLIYIDFICPISAEFQvNLSSRDFKKLRSIFSDAarmvtsgrsyhdpvtpfa 482
                 788******************************9999888889999***********9986544*********************************** PP

                 .....................STTTTTTHHHHHHHHHHHHHHHHHHHHT CS
         RGS  84 .....................qpsrklfeeaqeevfellekdsypkFlk 111
                                        + ++f+ea+ ++  l  ++ +pkF+k
  CCE26627.1 483 dspmrpeedtalvrymgpipdDFNDSVFDEAELSIKYLVLTNTWPKFIK 531
                 ********************99999**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3675.40
//
Query:       CCE26628.1  [L=998]
Description: related to non-ribosomal peptide synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-71  239.2   0.1    1.1e-70  238.4   0.1    1.4  1  AMP-binding     AMP-binding enzyme
     0.0062   16.7   2.3       0.14   12.3   2.1    2.4  1  Cytochrom_B561  Eukaryotic cytochrome b561
     0.0082   16.5   1.8     0.0082   16.5   1.8    2.6  2  DUF3995         Protein of unknown function (DUF3995)
  ------ inclusion threshold ------
      0.027   15.4   0.0       0.07   14.1   0.0    1.7  1  AMP-binding_C   AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.4   0.1   2.5e-74   1.1e-70       3     422 ..      36     422 ..      34     423 .. 0.83

  Alignments for each domain:
  == domain 1  score: 238.4 bits;  conditional E-value: 2.5e-74
                  HHHHHSTTSEEEEE...CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETT.S-HHHHHHHHHHHTES CS
  AMP-binding   3 eqaaktpdkvalvd...sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnpt.ltaeelayiledseak 96 
                  ++aa  p   a++d   +   + lTYrel  +++ l++ Lr+lGv++++++ ++++++ e+v+ ++ail+ Ga +vpl+ +  +  +++++ e+++  
   CCE26628.1  36 RHAASIPSVKAVYDlsnGVHARELTYRELAIQAQLLSSRLRALGVGPDQKIPLVVKRGTEMVIGIMAILSCGAQYVPLDGGiVPDSTIRHVAEQCGGH 133
                  56666676677766877667899********************************************************96257799*********** PP

                  EEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHH CS
  AMP-binding  97 vliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkle 194
                  +++  + s   +++++       +++ iv+ + +++++ +l++ + +          + ++p++ +y+iYTSGTTGkPKGV ++h+n+++ v+    +
   CCE26628.1 134 IVL--CISSTKSRVKALL----PTSIPIVIVQRAIPDQ-TLNNPKAWT---------DLASPNTGCYVIYTSGTTGKPKGVDVTHKNVANLVCLS--P 213
                  ***..4333334443333....3455566665555544.444444222.........24789*****************************9994..4 PP

                  HCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEES CS
  AMP-binding 195 trfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllgg 292
                     +++++  v ++l ++++++  +e++ +l++G+t+v+  ++ +  p   l+ ++     v+ ++P++l +   ++  k        +++++v ++g
   CCE26628.1 214 GGLGVRPGMSVGQVLNISFDMAA-WEIFSCLCNGGTLVVRGNNWE--P--TLDELD-----VLICTPTILSKY--HP--K------LYPKIKVVATAG 291
                  447778889*************8.***************664433..3..244444.....99*******999..43..2......3467******** PP

                  S-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEE CS
  AMP-binding 293 eplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafd 390
                  ep s+ l++ + ++   + +++ G+TEtt+v t + ++   + + s+G+p p++ v+i+D + g+pvp g+ G ++ +g+gv++gY +  ++t+e+++
   CCE26628.1 292 EPTSQGLADLWASHA--TYWNCCGPTETTIVNT-MSKHVVGE-PISIGRPTPNNMVYILDHD-GRPVPVGVAGVMWAGGHGVTRGYVGLASKTKETYI 384
                  ********9999996..38************99.66455544.558***************9.*********************************** PP

                  E....T.CC.EEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 391 s....e.gr.wlrTGDlgrldedGyleivgRkkdlikl 422
                  +    + g  ++ TGD+g ++edG++ i+gR +d++k+
   CCE26628.1 385 PdpfaNdGSfMYCTGDIGQWREDGNIDILGRVDDQVKV 422
                  7789845778***************************8 PP

>> Cytochrom_B561  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   2.1   3.1e-05      0.14      29     130 ..     647     747 ..     641     752 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.1e-05
                     .-HHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHT--SS-SHHHHHHHHHHHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHH CS
  Cytochrom_B561  29 lskktkkllHli.lqllalilavvgllavfksknekeianlyslHswlGlvtvilfllqlvlGfvlfllpklskklralllplHvllGlvifvla 122
                     l+k++ k+ Hl  ++  a+i+ +++ l+   +++   +a+ ++  s+   +++ ++l+ l++G+v f  p ++kk+   ++++H+++G +++ l 
      CCE26628.1 647 LRKRLAKIYHLGgVHSGAGIC-ATAWLLGSTFRSTVAYAEKKTNDSLA-TLVISWMLCVLCCGLVGFAWPAFRKKYHDQFERIHRFVGWTVLALF 739
                     577788888876244444444.44555555666666677777777655.55677888889******************************99998 PP

                     HHHHHHHH CS
  Cytochrom_B561 123 ivtallGl 130
                      v  +l++
      CCE26628.1 740 WVRTILSV 747
                     88777765 PP

>> DUF3995  Protein of unknown function (DUF3995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.0      0.77   3.5e+03      45      84 ..     588     623 ..     581     650 .. 0.59
   2 !   16.5   1.8   1.8e-06    0.0082       8      90 ..     668     747 ..     662     756 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.77
     DUF3995  45 allllaaAllvlalarllgaplssrllrlaawvvaavlll 84 
                  +ll ++Al++l+ +   ++p + + l++a +v+a++  +
  CCE26628.1 588 IGLLNVGALIALIFV--HPGPEWLATLTAANLVLAVL--I 623
                 456777777777777..33333344444444444443..3 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.8e-06
     DUF3995   8 HlyWalGGtwgleslaeavvgekegsa.vPsavatlavallllaaAllvlalarllgaplssrllrlaawvvaavlllRgilgd 90 
                   +W lG+t+     +  +  ek++++   ++v  ++  +l++   ++++   r   + + +r++r ++w v a++ +R il +
  CCE26628.1 668 ATAWLLGSTFR----STVAYAEKKTNDsLATLVISWMLCVLCCGLVGFAWPAFRKKYHDQFERIHRFVGWTVLALFWVRTILSV 747
                 568********....777777777766544555666555555555555555556668899*******************99654 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.6e-05      0.07      29      76 .]     454     498 ..     432     498 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
                    -EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C  29 lvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    + +f v+  g++   e++ ah +k  + ya p+k++ ++++p t++GK
     CCE26628.1 454 IHGFTVPL-GPD--VETVLAHTKKLQPYYAIPSKIHQLNAFPTTANGK 498
                    56788873.532..3899999966666679*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (998 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.56
# Mc/sec: 5345.30
//
Query:       CCE26629.1  [L=131]
Description: probable enoyl-CoA hydratase precursor,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-22   78.0   0.0    7.2e-22   77.9   0.0    1.0  1  ECH_1     Enoyl-CoA hydratase/isomerase
    0.00032   20.3   0.4    0.00097   18.7   0.3    1.5  2  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0     8e-26   7.2e-22     115     245 ..       2     130 ..       1     131 [] 0.96

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 8e-26
                 EETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH CS
       ECH_1 115 aadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspaalrqlkealnakledal 213
                 a+++a f+l+e+k Glipgaggtq+l+ +vGk +A++ +l+gk+i+ +ea  +Glv   + + ++l++++++a+ l e+++ al+ +kea+ ++  d+l
  CCE26629.1   2 ASKSAYFALPETKRGLIPGAGGTQRLTAAVGKFRAMRTILMGKPITSEEAMSMGLVCDLMEDCDMLQQTIAAAKTLTEHGSVALQLAKEAVCRA--DNL 98 
                 678999************************************************************************************9886..788 PP

                 HHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH CS
       ECH_1 214 aeqleaeaklfestfskddikeGlqaflEkrk 245
                  +   +e++l++ tf +++ ++G++ fl kr+
  CCE26629.1  99 CRDDLFERNLYYTTFGTEEKRRGVDEFLAKRD 130
                 999999***********************997 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.3   1.1e-07   0.00097     114     188 ..       2      75 ..       1      94 [. 0.75
   2 ?    2.0   0.0     0.013   1.2e+02     250     312 ..      71     130 ..      57     131 .] 0.75

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.1e-07
                 E-TT-EEE--GGGGT----TTHHHHHHCSSTTH.HHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT. CS
       ECH_2 114 vtertvfAmPEtaIGlfPDvGgsyfLsrlpgel.GlylalTGarlkgadalaaglathyvpseklealeeaLaele 188
                 +++++ fA PEt+ Gl+P  Gg+  L+ + g++ ++   l G+ +++++a+ +gl   ++++   + l++++a+++
  CCE26629.1   2 ASKSAYFALPETKRGLIPGAGGTQRLTAAVGKFrAMRTILMGKPITSEEAMSMGLVCDLMEDC--DMLQQTIAAAK 75 
                 567889*****************999988775547778899**************98877654..44444444443 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.013
                 HHHHHHHHHS-HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTTS-- CS
       ECH_2 250 kktletlkkrsPtslkvtleqlrrgrklsslaevlrmElrlalrllaekDfveGvrallvdkd 312
                  ++++tl+++  ++l+++ e++ r+++l   ++ ++++l    +++ +++   Gv + l ++d
  CCE26629.1  71 IAAAKTLTEHGSVALQLAKEAVCRADNLC-RDDLFERNLY--YTTFGTEEKRRGVDEFLAKRD 130
                 467899999999*************9994.7777766554..455556777888888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 970.58
//
Query:       CCE26630.1  [L=528]
Description: uncharacterized protein CPUR_00099 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-82  276.5  23.7    2.6e-82  276.3  23.7    1.0  1  Solute_trans_a   Organic solute transporter Ostalpha
  ------ inclusion threshold ------
      0.064   13.6   0.0       0.26   11.6   0.0    2.1  2  DDT              DDT domain


Domain annotation for each model (and alignments):
>> Solute_trans_a  Organic solute transporter Ostalpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.3  23.7     3e-86   2.6e-82       3     265 .]      36     313 ..      34     313 .. 0.89

  Alignments for each domain:
  == domain 1  score: 276.3 bits;  conditional E-value: 3e-86
  Solute_trans_a   3 iiagvfallallislililqhlrhytkpseQrkiirIllmvpiyavsSllsllfpsaavylelvrdcYeafviysFfsllleylggeealikale 97 
                     +i++ ++l+a+++sl+l+++h+ +yt+p+eQr+iirIl+mvp+ya+sS+l l ++ +a+y+++++dcYeaf+i+sFf+ll++y+  + +  k + 
      CCE26630.1  36 VIGASCTLIATVLSLYLVWMHALNYTQPREQRYIIRILFMVPVYAISSYLQLQWYWHAIYFQVISDCYEAFAIASFFALLCHYVAPDLHSQKVFF 130
                     68999*******************************************************************************65333333333 PP

  Solute_trans_a  98 rd.ekkkllpln.............lclekvkltlkflkrcklgvlQyvvvkpllaivslileslgvyc.esfspkfaylyltiiynvsvtlAly 177
                     r+ +++k++ ++             +  +  k +l++++++++gv+ y+++++++++ +++ ++ + yc +s sp f+++++ +++ + vt+A+y
      CCE26630.1 131 RElHPIKPWVMPinwfakccggqrgI-WRVPKSGLTWFNILWVGVYHYCFIRVTMTVSAVVSQYHHRYCeSSNSPVFGHIWIIVLNALAVTIAMY 224
                     33333554444455777767777641.2333456***********************************559*********************** PP

  Solute_trans_a 178 alllfykalkkeLkpfkpvlKflciklvvfltfwQglvlsilvk.vgviketkklsaediaagiqnllicvEMvlfailhlyaFpykeY 265
                     +l++fy++lk++L ++k + K+++iklvvfl+fwQ+  +s+ ++ +++++++++l ++d++ gi++ll+cvEM++failhl+aFpy +Y
      CCE26630.1 225 CLIQFYVQLKDALTEHKLFIKIVAIKLVVFLSFWQASSVSVGTStLDLVRANEALAYPDLKVGIPALLLCVEMAMFAILHLWAFPYAPY 313
                     ****************************************99997799999999*********************************99 PP

>> DDT  DDT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.94   8.5e+03      43      57 ..     203     217 ..     188     218 .. 0.78
   2 ?   11.6   0.0   2.9e-05      0.26       2      18 ..     350     366 ..     349     369 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.94
         DDT  43 seLlaeihiaLLkal 57 
                 s  + +i+i +L+al
  CCE26630.1 203 SPVFGHIWIIVLNAL 217
                 456999999999997 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.9e-05
         DDT   2 dfgdlLmvweFLhvFge 18 
                 ++gd+L vw+F+  Fg+
  CCE26630.1 350 AVGDALNVWDFIKAFGR 366
                 69*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3612.65
//
Query:       CCE26631.1  [L=2417]
Description: related to regulatory protein RLR1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.9e-246  818.1   0.0   8.5e-246  817.5   0.0    1.2  1  THOC2_N   THO complex subunit 2 N-terminus
    5.6e-92  308.2   0.0      1e-91  307.3   0.0    1.4  1  Tho2      Transcription factor/nuclear export subunit protein
    1.9e-27   95.1   0.1    3.7e-27   94.2   0.1    1.5  1  Thoc2     Transcription- and export-related complex subunit


Domain annotation for each model (and alignments):
>> THOC2_N  THO complex subunit 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  817.5   0.0  1.4e-249  8.5e-246       1     630 []     155     885 ..     155     885 .. 0.97

  Alignments for each domain:
  == domain 1  score: 817.5 bits;  conditional E-value: 1.4e-249
     THOC2_N   1 ltdeviasWessgrqelveklkqarsdededelsslfqellrsvlderlspedagsfvkeilkeeseeseksk.aedvaklfldvvsvldeeed..lak 96 
                 lt++ + +W++++rqe+v++++qar+d d +els+l+qe+++sv+++r+++ +ag++vkeil+e+++e  k++ a+++++ fld++ ++++++   +++
  CCE26631.1 155 LTEDKLMNWDEGRRQEVVRQGIQAREDVDITELSALLQEFVHSVIENRVDAFNAGACVKEILGEDNAEVVKDAyAFAPHTFFLDSLAIVMDNDPtlYRP 253
                 799*************************************************************9999887778*******************9999** PP

     THOC2_N  97 llrkllaatiiseslmreeldskllqelglvrdtvferklirkstnllYrqkkyNLLrEeseGYSkLitelfttsdseepseekaeetlervkaliGkF 195
                 +lr++l+at++s++lmr++ld+++lq+lgl+rd+ f+r ++r++tnllYrq++yNLLrEe+eGYSkLitelf+t++ ++p  e a++t+er+k+liG+F
  CCE26631.1 254 ALRDFLMATGVSPALMRQVLDAPILQQLGLIRDN-FARLGVRQATNLLYRQANYNLLREETEGYSKLITELFSTNSVTPPPPELARQTFERIKGLIGTF 351
                 **********************************.*******************************************999****************** PP

     THOC2_N 196 dLDpgRvLDviLdvfaavvvkqyrffvklLrasswwPr............................................................. 233
                 dLD+gR+LDv+Ldv+aav++kqy+ffvk+Lr+sswwPr                                                             
  CCE26631.1 352 DLDVGRALDVTLDVAAAVLIKQYKFFVKFLRVSSWWPRshlkydsgfigglplwanpeylqwtateedeesltqqklardiafwdrardvhlgaffelg 450
                 *************************************************************************************************** PP

     THOC2_N 234 ........................deesewieetktlppggnrvaAqlLgfklrfysse...addelpenllylaAlLIkiGfislsdlYphLspddee 305
                                         d e++w++etktlpp+gnrvaAqlLgfkl fy+se   ++d lp+nllylaAlLIk+Gfis++dlYphLsp+de+
  CCE26631.1 451 grkisaadlehaslanndqgddnvDLEQQWMTETKTLPPPGNRVAAQLLGFKLLFYNSElrdKADVLPANLLYLAALLIKVGFISITDLYPHLSPPDED 549
                 ************************999************************************************************************ PP

     THOC2_N 306 mealkekyekeleekssek.....gsanaLamagaLsdddDtep.........kkekeakkkekakkkeeeekeeepepeklkdqkiqLlkaLLaiGal 390
                 me+++e  +++le++  e+     g++naL+mag+L++ dD++p          ++k+++ +++a ++e+++k+++pep    +qk+ Ll++LL+iGa+
  CCE26631.1 550 MEKIREAEAEKLEKE--ERagrggGQMNALLMAGVLPQGDDDNPnaanipkrdVNKKSEAGQKQAMQDETDNKPKLPEPL---EQKVSLLTQLLTIGAI 643
                 ***************..77799*********************9*****9988555566667777778888888999998...9*************** PP

     THOC2_N 391 peslfiLgryPwlaevdpeipelihRilehsleplyesvravplssee....kvae.dqsglpkgskvkltespkkrllrwpktdkpleldl..nkkyr 482
                 peslfiLgr+Pw++ev+p++++ ihRil++sle++++++r++   + e     + + dqsg+pkgs ++l+++p+k+ +rwp+++k   +d+  n++yr
  CCE26631.1 644 PESLFILGRFPWIPEVYPDVLQRIHRILHVSLEKVFNEARPKAAIAVEvpskAILDtDQSGMPKGS-LRLQSPPVKKQWRWPFPEK---FDVneNQNYR 738
                 **************************************99666555558887788889********.*******************...55556***** PP

     THOC2_N 483 FyydeWkdnlpvcqtvddvfklckellkllGvklgkdpeLlsklcrIgkksleeedeseenrerWldllrrlllPalsllkenpgvvdevyeLlklfpl 581
                 Fy+deW+dn+pvcqtv+dvf+lc+++l+l+Gv++gkd++Llskl+rIg+ksl  +d+s++n++rW+dllrrlllPals++k+n +vv+++++Llk fp+
  CCE26631.1 739 FYWDEWADNIPVCQTVEDVFALCNTFLNLSGVNIGKDEALLSKLARIGAKSL-VDDTSDANLTRWHDLLRRLLLPALSHTKANASVVNAIWDLLKRFPI 836
                 ****************************************************.9********************************************* PP

     THOC2_N 582 ekRYslYgewfegltsrlpeikaafakaeketkdiLkrlSkenikqmaR 630
                 ++RY++Y+ewfeg++srlp++k+afa+a+++t++++kr+S +n+ +ma+
  CCE26631.1 837 TTRYQMYAEWFEGQISRLPAMKTAFARATADTRGTMKRVSLTNLGEMAK 885
                 ***********************************************97 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.3   0.0   1.7e-95     1e-91       1     301 []    1232    1567 ..    1232    1567 .. 0.98

  Alignments for each domain:
  == domain 1  score: 307.3 bits;  conditional E-value: 1.7e-95
        Tho2    1 weilspefyvtFWslslyDiyvpkeqYekeieklkseieelakdrsde.raaakkkkkekkrlkeliekLeeEkkeqiehvekvkkrLkeekkswfk 96  
                  w++++p++y++FW+l+l D+++p+e Y +e +++  e+++l++drsd+ r+a +++++++k+l++l+  L +E++e+  +++k+k  L++ +++ f+
  CCE26631.1 1232 WQKITPDLYAMFWALQLGDVCFPEEIYVRERQRVMGEWQTLSNDRSDMsRKAVDRRNEKRKELMDLQGYLLDELSEHGLRKAKWKFFLSRLFQTSFP 1328
                  899********************************************************************************************** PP

        Tho2   97 ndekkkkeitdallqrcilPRlllsplDAlycakfvkllhelktpnFstldlldrlfkan.liplifscTerEaenlgrFlneilkdlkrWhkde.. 190 
                  + ++k + ++dall++c++PR+l+sp+DA+++++f+k lhe ++p F++++++drlf+an l++lif cT rEae+lgrFl+ il+dl+rWhk+e  
  CCE26631.1 1329 DPAAKPDGVSDALLEQCVIPRVLMSPADAEFTFRFIKALHEWNAPVFRLMSFYDRLFNANrLRSLIFICTVREAEYLGRFLKLILEDLSRWHKNEvs 1425
                  *********************************************************************************************9999 PP

        Tho2  191 ...............eayekeal...kkdlpgfqkklkeegk.ekelkyeqfrkvlkkwhkkilkalkscleskeymeirNaiivLkkvlevFPavk 268 
                                  ay++e +   +k + gf+ +l++egk e++++++qfr++l++whk++++alk+cl  +e+m+irN i+vLk vl++FPav+
  CCE26631.1 1426 paekeskvtkgasnlGAYDTEGKgvtEKPHFGFALTLNTEGKpETFVEHAQFRDLLFRWHKNLNMALKHCLGGSEWMHIRNGITVLKCVLDYFPAVD 1522
                  999999999999999*****99997667777******888888****************************************************** PP

        Tho2  269 nsgekvlnaveklakqek............reDlkvlansllkll 301 
                  ++++++++++++++k+e+            r Dl+v+a++ +++l
  CCE26631.1 1523 FMATQFTAQLQNITKREAaakttpdseeggRVDLSVAAQGAMSEL 1567
                  ****************************************99986 PP

>> Thoc2  Transcription- and export-related complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.1   6.3e-31   3.7e-27       1      76 []     887     962 ..     887     962 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 6.3e-31
       Thoc2   1 laklshsnPlivfevvlsqiesYdnlievvvdalkyltslsyDvLtyclleaLanserervkedg.lnlskWlqsLa 76 
                 lak+s+s+P+ivf+v+ +q+esY+nlie++v+++ky+t+lsyDvL+++ll++L++s r+r+++++ l++skWlq+L+
  CCE26631.1 887 LAKTSYSSPGIVFRVAFEQLESYPNLIEAFVECTKYFTDLSYDVLVWSLLNSLGKS-RSRTQAEHaLTTSKWLQALS 962
                 8******************************************************8.*****99989********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.22u 0.32s 00:00:01.54 Elapsed: 00:00:00.54
# Mc/sec: 13562.88
//
Query:       CCE26632.1  [L=505]
Description: MET-5 homoserine O-acetyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-45  155.7   0.0    3.9e-45  154.5   0.0    1.6  1  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.031   14.9   3.6      0.043   14.4   3.5    1.5  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.0   4.3e-49   3.9e-45       1     255 [.      68     452 ..      68     454 .. 0.88

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 4.3e-49
                    SEEEEE-STTTCGGG..GTTGHHH.HHHHHT..TSEEEEEEETTSTTSSSTTTGB...........CHHSHHHHHHHHH..HH.HHHCTTSSEE.E CS
  Abhydrolase_1   1 pvlvilhGlpgssdv..waergla.paLakd..gfdvillDlrGvgySspapacin..........ddygtasvaddld..ri.ldalgddklt.l 77 
                    +v+vi+h+l+gs+d+  w++++l+ p+  +d  +f++++++++G++y++++p +            +++++ +++dd++  ++ ld lg+++++ +
     CCE26632.1  68 NVMVICHALTGSADLsdWWGPLLGgPGRVFDtsRFFIVCMNSLGSPYGTASPVTAKdndassgrygPEFPLTTIRDDVNlhKLlLDDLGVKQIAaV 163
                    699**************9999886344455578********************999************************9667************ PP

                    EEETHHHHHHHHHHHHHGGGEEEEEEESE....CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH...... CS
  Abhydrolase_1  78 vGhSmGGmialayaaeyperVkalvllga....idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf...... 163
                    +G+S+GGm++l++a + +++++++v +++    +++ +s++eaqrq+++ +p++ dgy+  + ++++g+ +a+++a+l++r+r++++  f      
     CCE26632.1 164 IGGSLGGMFVLEWAYLGKDYIRCIVPIATssrhSAWGISWGEAQRQSIYADPKYDDGYYSLDDPPTTGLGAARMAALLTYRSRNSFESRFgrnipd 259
                    ************************************************************************************************ PP

                    .............................................................................HCHHHCCHHHHHHHCHHHH CS
  Abhydrolase_1 164 .............................................................................pdkskrfpssgsdnassla 182
                                                                                                 +       ss+ d  ++++
     CCE26632.1 260 pskiqtisgrqrprpstpseahfhihndghnikrtatsrrgsgvstqaaslspstvdvvdvpdpqfhgpargtslgrE-------SSNVDSLTGGD 348
                    ***************************************************************999999855555442.......44444444444 PP

                    HHHHHHHHHHHHCCHHHHHHHHHC...................................THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS.EEE CS
  Abhydrolase_1 183 tgalksieqwpttdsaklllrlre...................................lknvlaptlvisgtsDplvppkaledlaqllpk.krl 242
                    t+      + + ++sa+++lr+++                                   l  + +ptlv++++sD+l++  ++e++a+++++  ++
     CCE26632.1 349 TTL-----PKSSYFSAQSYLRYQGtkfvkrfdsncyiamtrkldthdvsrgrtntigeaLALIEQPTLVLGIESDGLFTFAEQEEIAHHIKDaRLE 439
                    444.....444455555555555555555555566677777777799999999997777666777************************9998999 PP

                    EEEETCSSSHHHH CS
  Abhydrolase_1 243 vvisdagHlafle 255
                    +++s++gH+afl+
     CCE26632.1 440 RIDSPEGHDAFLL 452
                    999********96 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   3.5   4.8e-06     0.043       2     126 ..      71     245 ..      70     455 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.8e-06
                    EEE--GC.......GCHHHH.....HHHHCCTCEEEEE--TTS..T.................S-GGCS--HHHCHHH....HHHHCCTT..TTSE CS
  Abhydrolase_6   2 lllHGagss..assWlvapL.....aallaagvhvlapDlpGh..G.................rsdpppldledladl....aalldelaagggpv 67 
                    + +H++ +s   s+W ++pL     + + ++++ ++++   G   G                 +++ p ++    +d+      lld+l  g +++
     CCE26632.1  71 VICHALTGSadLSDW-WGPLlggpgRVFDTSRFFIVCMNSLGSpyGtaspvtakdndassgryGPEFPLTTI---RDDvnlhKLLLDDL--GVKQI 160
                    566764444444455.44664555555566666668888888888855554444443333222234344444...55522233366666..47777 PP

                    .EEEEETCHHHHHHHHHHCC...............................EEEEES-..----TTTS----TTHHHHHHTT-C..CCCHC CS
  Abhydrolase_6  68 .vlvGHSlGGalalaaapla.............................lvvgvlldppptalpagllaaalelllallallrl..lawls 126
                      ++G SlGG+ +l+    a                             ++ +++ dp    +++g+ +   ++  +l+a++++  l+++s
     CCE26632.1 161 aAVIGGSLGGMFVLE---WAylgkdyircivpiatssrhsawgiswgeaQRQSIYADP---KYDDGYYSLDDPPTTGLGAARMAalLTYRS 245
                    8**********9999...6666677666665555566566666666665555566666...444444222222222222222221123332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3537.41
//
Query:       CCE26633.1  [L=722]
Description: probable high-affinity phosphate permease,phosphate-repressible [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-49  168.5  14.0    8.2e-49  166.7  14.0    1.7  1  Sugar_tr  Sugar (and other) transporter
    1.8e-19   69.9  24.3    1.8e-19   69.9  24.3    1.5  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7  14.0   9.1e-53   8.2e-49       2     448 ..      67     567 ..      66     570 .. 0.86

  Alignments for each domain:
  == domain 1  score: 166.7 bits;  conditional E-value: 9.1e-53
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.......HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-T CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskee....ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaa 96 
                 +lva +g ll  Yd++ i+ ++tll+ ++  g +++++   +     + +s ++ +++++G ++G +++g+l+d++GR+  + i  ++ + g++ +a+a
  CCE26633.1  67 VLVAGVGFLLDSYDIFSINLITTLLGMVFWSGEDVKDGFGGNkgvmPDATSQALKASTSAGIVAGMIVFGWLADTLGRRRMYGIELAIIIFGTFSCALA 165
                 5677788899****************9888888888887777999999999************************************************ PP

                 TTT...SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-...................TTHHHH CS
    Sugar_tr  97 kgk...nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsn...................adgwri 172
                  +    ns  +li+ Rvl+Gig+G+ + l+++ +sE+Ap+++Rga++s   ++  +G+l+aai+ l++   +++                   +  wri
  CCE26633.1 166 SSSpaiNSASILIFWRVLMGIGIGGDYPLSSVITSEFAPTRWRGAMMSAVFSMQGLGQLMAAIVALITtVAFKSsfsnisdegscdsacqvaaDRAWRI 264
                 988999***********************************************************9996555558999**************9999*** PP

                 HHHCCHHHHHHHHHHGGGS---HHHHHHTT-HH.HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.............HTTHHHHSH......HHHHHH CS
    Sugar_tr 173 llglqlvpallllilllflPESPrylvekgkee.eakevlaklrgeedadrelaeekdsleaeqeee........kaswkellsskt...vrqrlligv 259
                  +g+ ++pa + l+ ++++PE+Pry++ ++++  +a++ ++    ++ a++++ +  +s ++++++         +asw  ++  ++   +++ l+   
  CCE26633.1 265 IVGVGAFPACFALYYRITIPETPRYTFDVQHDVeKADADIKAYVASNVANKSISDLENSRRHSRSKIsecsldlpQASWADVFAYFGdwgNFKVLVGTT 363
                 **************************988877669999999988888888888888888888865548899***********99999886666666666 PP

                 HHHHHHHHTTHHHHHHHTTTHHHHSS-THH..........HHHHHHHHHHHHH.HHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS.. CS
    Sugar_tr 260 vlqifqqltGinaimyysptifenlglsks..........llvtiivgvvnfv.atfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakska 347
                 + ++f  l  +   ++    +++ +g+             +++tii+ +   +     a+f++d +GR++l ++G++  +i+f i+g   ++l + s  
  CCE26633.1 364 MSWFFLDLAFYGLGLNQ-GIVLHAIGYGRGhdmyhklwnnAVGTIILTAAGSLpGYWTAVFTIDTIGRKPLQVFGFLLLTIVFGIFG---FMLDHLS-- 456
                 66666666544444333.345567777766677776666666676666665551455679**************************9...5555555.. PP

                 .CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH............T-HHHHHHHHHHHHHHHHHH CS
    Sugar_tr 348 asivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig............ggyvflvfaglavlfiifvf 434
                  ++ +++++++  +lf++g++++ +v+  E fp++ Rs++  +++a+  +  ++ +++   ++++ +                  +fa +++l+++ v 
  CCE26633.1 457 -EGTMLALYIIGQFLFNAGPNTTTFVIPGECFPTRYRSTGHGVSAAMGKIGAIVAQVISIPLLKNAQiqgcvgiscsphLDRLLKLFALFMLLGTL-VS 553
                 .68999***********************************************************9999999999876533445566666666665.56 PP

                 HHS--STT--CCCC CS
    Sugar_tr 435 ffvpetkgrtleei 448
                 + vpetkg+tlee+
  CCE26633.1 554 LLVPETKGVTLEEL 567
                 78**********97 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9  24.3     2e-23   1.8e-19      39     352 ..     122     510 ..      71     511 .. 0.71
   2 ?   -3.4   0.0       0.4   3.6e+03      89     127 ..     542     580 ..     536     587 .. 0.51

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 2e-23
       MFS_1  39 tlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.....sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfs 131
                 +  ++g +++++++G+l+d +Grrr++ + l++ ++g++ +++a     +++  +l++ rvl+G+g g+ +p++ +++++ +p + rg +++ + ++ +
  CCE26633.1 122 ASTSAGIVAGMIVFGWLADTLGRRRMYGIELAIIIFGTFSCALAssspaINSAsILIFWRVLMGIGIGGDYPLSSVITSEFAPTRWRGAMMSAVFSMQG 220
                 4468899***************************999555555434566667779******************************************** PP

       MFS_1 132 lGailgpllggllasslg.......................Wravfyilaivsllafvlfllll..peepperkrkspkeee................. 188
                 lG +++++++ + + ++                        Wr +  + a+ +++a     l++  + ++++r ++  + +                  
  CCE26633.1 221 LGQLMAAIVALITTVAFKssfsnisdegscdsacqvaadraWRIIVGVGAFPACFA-----LYYriTIPETPRYTFDVQHDVekadadikayvasnvan 314
                 ***********99977778999*********************8888888888888.....45523222222222222222256788888888888888 PP

       MFS_1 189 .....................kgtgpaplvp.........awkallkdpvlwillialllfffgfsglltllplylqevlgls.glllaglllallalv 256
                                          +a++++          +k l+     w++l  ++++   ++g++ +   y    +++   l+ ++  ++ + l 
  CCE26633.1 315 ksisdlensrrhsrskisecsLDLPQASWADvfayfgdwgNFKVLVGTTMSWFFLDLAFYGLGLNQGIVLHAIGY-GRGHDMYhKLWNNA--VGTIILT 410
                 888888777666565555555444444444455555555555555555544756656666655666688888888.44444447445555..3333333 PP

       MFS_1 257 gail..allagrls.drlgrrrrlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggal 351
                 +a++  + +++ +  d +gr++  ++++lll++++ ++ ++    s   +l+++++  f + +  +++ +++  + +p++++ t  g+   +g +g+++
  CCE26633.1 411 AAGSlpGYWTAVFTiDTIGRKPLQVFGFLLLTIVFGIFGFMLDHLSEGTMLALYIIGQFlFNAGPNTTTFVIPGECFPTRYRSTGHGVSAAMGKIGAIV 509
                 33333367777777799998777777777777777666666666555555555555555555666********************************98 PP

       MFS_1 352 g 352
                 +
  CCE26633.1 510 A 510
                 7 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.4
       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraiglls 127
                 ++l +l G   ++l+p    ++ +  ++e r+++++  +
  CCE26633.1 542 FALFMLLGTLVSLLVPETKGVTLEELSGESRTSYNAGCN 580
                 444445555555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 5207.92
//
Query:       CCE26634.1  [L=130]
Description: uncharacterized protein CPUR_00103 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   14.7   0.0      0.039   13.9   0.0    1.5  1  DUF3564   Protein of unknown function (DUF3564)


Domain annotation for each model (and alignments):
>> DUF3564  Protein of unknown function (DUF3564)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.2e-06     0.039      28      90 ..      55     123 ..      29     129 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.2e-06
     DUF3564  28 rrWsreghegidlPawGklkseegat........lllaadeeealctLegldldarkgkveseqGrakwvs 90 
                  r+ re+ +++ lP w + ++++ ++         +l++  ++  c+L+gl+l   + +++s+ G+ +w +
  CCE26634.1  55 VRYVREAVRALRLPPWSTYHQSNRIMftpkcnihVMLQPVINRVWCELQGLRLG--DYQATSKGGSPAWEN 123
                 5789***************99887662222222245688889999********9..666788888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 976.25
//
Query:       CCE26635.1  [L=167]
Description: uncharacterized protein CPUR_00104 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.077   13.2   0.0       0.12   12.6   0.0    1.3  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.6e-06      0.12      21     100 ..      44     147 ..      39     155 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-06
                 EEEEE-HHHHHHH-HHHHHHHTST...................TTTTCCCE.....EEEETTSGHHHHHHHHHHHHHSEEEC-......CGGGHHHHHH CS
         BTB  21 kefkahkavLaarSpyFkalftsk...................eieessvs.....eielddvepeafealLefiYtgeleit......seenleelLa 89 
                  +f+     L  +Sp+F+a++t+                    +      +     ei+ ++ + e+f  lLe+++    +++      +  +l+++  
  CCE26635.1  44 ARFRLSSKHLIRASPVFRAMITGPwkeslafaaapvakhsagiP------DedalpEITATEWDKETFLLLLEILHGRYEPLKdplpdvDACMLVKMCV 136
                 577888888999************99999888887766665432......0344459*****************9876666656677777788888888 PP

                 HHHHHT-HHHH CS
         BTB  90 aadllqiprlk 100
                 + d++q+++ +
  CCE26635.1 137 LVDYYQCHEAV 147
                 88888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1328.63
//
Query:       CCE26636.1  [L=502]
Description: uncharacterized protein CPUR_00105 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3936.98
//
Query:       CCE26637.1  [L=418]
Description: related to nitrogen permease regulator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.2e-124  414.6   0.1   3.5e-103  345.7   0.1    2.1  2  NPR2      Nitrogen permease regulator 2
  ------ inclusion threshold ------
       0.07   13.2   0.0       0.13   12.3   0.0    1.4  1  DUF2278   Uncharacterized conserved protein (DUF2278)
      0.087   11.6   0.0       0.53    9.0   0.0    1.9  2  NPR3      Nitrogen Permease regulator of amino acid transport


Domain annotation for each model (and alignments):
>> NPR2  Nitrogen permease regulator 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.7   0.1  5.9e-107  3.5e-103       3     303 ..       2     288 ..       1     294 [. 0.95
   2 !   67.7   0.0   1.4e-22   8.3e-19     343     437 ..     292     404 ..     287     407 .. 0.93

  Alignments for each domain:
  == domain 1  score: 345.7 bits;  conditional E-value: 5.9e-107
        NPR2   3 ikaifyavFhpteGtkivhqvPegsivtssesdekealFeFdtvknyviPkpqlcnrllslki..nkykvlgyPvnienekYsRneFtFnfafvidyde 99 
                 i+aifya+F+p eG kiv q+P+gsi++s++ + ++   +Fd++++y+iP++ +cnr+l++    nky +lg+P+ i ++kY+RneF+Fnf ++i+   
  CCE26637.1   2 IQAIFYARFFPREGPKIVAQSPPGSIAPSKTPTARAPFVDFDVLQEYIIPRQAFCNRYLTINSpdNKYTLLGFPIVIPDSKYQRNEFIFNFGLLIEAG- 99 
                 89************************************************************999*******************************99. PP

        NPR2 100 sdttpYesvvkrlgrllrvlEeqnkfLskedkdvvffksaklaeadatvnvpgasklssieslieqileDLnnysEcviplddsnsvdlKLfPilpePv 198
                 +d tpYe vv+ l+ ++  +E+q+++Ls  ++  +   ++++           a++ + iesl+e+++eDLnny+Ec+ip+dd+n++++KLfP ++ P+
  CCE26637.1 100 VDPTPYEGVVRYLAATFSAMEKQGEYLSLGERIDM---RSRM-----------AER-RPIESLLEIVKEDLNNYGECMIPVDDANTINIKLFPHHRTPP 183
                 ****************************9999222...2222...........233.69**************************************** PP

        NPR2 199 nikayqvPiatvklsslvdvnwDltlkkilpyinGinsvkriaeladadlsLtkqciqhLlyYkcielldiFqfsniYaptneigdFlkdegeiadeCq 297
                  +ka++vPia+vk+ +++d +wDltl+k++ yi+G+ +v+ri++la + l+L+k +++hLlyY++i l+diF f   Yap   i+dF+++++ i deC+
  CCE26637.1 184 TVKAWHVPIAKVKFVDIIDPTWDLTLQKVIAYIDGVSDVRRISQLASVSLDLVKIALRHLLYYETIILIDIFFFGSCYAPRPGIHDFIRNQDGIVDECA 282
                 *************************************************************************************************** PP

        NPR2 298 ayvvve 303
                 +yv   
  CCE26637.1 283 HYVSHG 288
                 ***865 PP

  == domain 2  score: 67.7 bits;  conditional E-value: 1.4e-22
        NPR2 343 pskttlfrLyrslkqgqtvkeWvlqekkl....lagiDvrRliqFGvlkgliyrvhkypilnssak..............antllksldglkslDellk 423
                 +s+ +l++L  +++ g++v+eW++  +++    l+ +DvrR++qFGv+kg +yrvhkyp+++ +                +++l k+ dg++++D++++
  CCE26637.1 292 VSNYHLIKLMAAFAPGRSVQEWIMVSQDHgfdvLNYVDVRRFVQFGVIKGCLYRVHKYPLSTQHLAalasgettplpasdGESLQKYTDGKHHFDQIIT 390
                 57889*******************999988888***************************9996559************99****************** PP

        NPR2 424 elkvkeekleeklk 437
                 e ++ ++++ ++lk
  CCE26637.1 391 ERNLTHDEIIDQLK 404
                 ****9999988887 PP

>> DUF2278  Uncharacterized conserved protein (DUF2278)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.1e-05      0.13     135     157 ..     252     274 ..     214     287 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.1e-05
     DUF2278 135 atvyvFGekfedekGiHdihmNQ 157
                  +++ FG+ + ++ GiHd   NQ
  CCE26637.1 252 IDIFFFGSCYAPRPGIHDFIRNQ 274
                 79********************9 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.043   2.6e+02       3      45 ..      41      85 ..      40      87 .. 0.76
   2 ?    9.0   0.0   8.9e-05      0.53     317     381 ..     195     261 ..     135     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.043
        NPR3  3 dseflaellsPerelcntrFeltv..DdlaFlGlPvhvdedgkwr 45
                d ++l e + P++++cn+   +    ++++ lG+P++++++   r
  CCE26637.1 41 DFDVLQEYIIPRQAFCNRYLTINSpdNKYTLLGFPIVIPDSKYQR 85
                568999999********97554433346899*****999887655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 8.9e-05
        NPR3 317 aelvralkptlsla..eyaslldedleeeqvsesnslelsqirslarhLiywRrArvIdplssrdvY 381
                 +++v++++pt  l+  ++   +d + + +++s+  s++l+ ++   rhL+y+   ++Id+    + Y
  CCE26637.1 195 VKFVDIIDPTWDLTlqKVIAYIDGVSDVRRISQLASVSLDLVKIALRHLLYYETIILIDIFFFGSCY 261
                 789******9766500555556666777768888************************998777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3129.90
//
Query:       CCE26638.1  [L=637]
Description: probable tyrosine--trna ligase precursor,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-67  227.8   0.0    2.3e-67  227.4   0.0    1.2  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)
    3.5e-47  159.1   0.0    2.3e-46  156.5   0.0    2.1  2  TyrRSs_C      Tyrosyl-tRNA synthetase C-terminal domain
  ------ inclusion threshold ------
      0.023   14.6   0.0       0.62   10.0   0.0    2.6  2  Ribosomal_S8  Ribosomal protein S8


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.4   0.0   3.8e-71   2.3e-67       4     289 ..      50     367 ..      47     371 .. 0.97

  Alignments for each domain:
  == domain 1  score: 227.4 bits;  conditional E-value: 3.8e-71
                   S--EEEEEEETSSS.-BGGGHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT.-SSHHHHHHHHHHHHHH..HHHHHHHTCHTTT............ CS
  tRNA-synt_1b   4 rplrvysGidPTgk.lHlGylvplkklvelqkaghevffliaDlhAiigdps.kaeerklrkreevlena..ikaqlakgldpek............ 84 
                   +++ +y+G+dPT++ lH+G+l+p+++l++l  +gh +++l+++ ++ igdps ++++r+++++++  +n+   ++ql +++++              
    CCE26638.1  50 KRIGAYVGVDPTADsLHIGHLLPFMPLFWLWFHGHPAITLLGGSTGRIGDPShRSTSREPLTNAQLSKNItkLHYQLTRIWSNVCslrdkynyekdw 146
                   57899******************************************************************************************** PP

                   ...EEEEETHHHHTTHHHHHHHHHHHTTCBHHHHHHHHHCCHHCSSSC--BHHHHHHHHHHHHHHHHTCHS....EEEEEGGGHHHHHHHHHHHHHH CS
  tRNA-synt_1b  85 ...aevvlqsewlehlelaellrdlgklgslnrmlqfksvkkrleegegislgeftYplLqaaDilllkad....lvpgGsDQkqnielgrdlarrf 174
                      + ++++s wl+ l++ ++ ++l+k++++ +ml+++svkkr+e g+g+s++e+ Ypl q++D+++l+ +    +++gGsDQ +ni++g++ ++ +
    CCE26638.1 147 aarRALLNNSMWLQGLSIYDFSKRLAKHTRVGSMLARDSVKKRMEDGDGMSMAELMYPLYQGWDFWHLYNKlniqMQIGGSDQFGNIVAGVEAVKII 243
                   *9888*****************************************99************************************************* PP

                   HHH..........STTSS-EEEEET-BBSTTSSSBTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTCSHHHHHHHHHTHHHCHHHHHHHHCCSEE.E CS
  tRNA-synt_1b 175 nkk..........evfkkpegltvplltgldGekKmSKSagnsaIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleavsgkkp.k 260
                   + +              +p g+tvpl  +++Ge K++KSagn  I+Ldd k+s+ ++++++v++sde+ve+llkl t+++++ i++++  ++ +p k
    CCE26638.1 244 RASeelptarmptGWQHEPLGFTVPLQLDSSGE-KIGKSAGN-GIWLDDFKTSAFDLYGYFVRRSDEDVERLLKLYTFMPMDKIQEIMTQHQADPsK 338
                   99999*******98889****************.********.****************************************************** PP

                   SSHHHHHHHHHCCCCHHHHHHHHHHHHHH CS
  tRNA-synt_1b 261 reaeellaeevtklvhggdlkkalaealn 289
                   r a++ la+ev  lvhg++ + + a++++
    CCE26638.1 339 RVAQHTLAFEVLSLVHGTQRALQEAKQHE 367
                   *****************998877776665 PP

>> TyrRSs_C  Tyrosyl-tRNA synthetase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.14   8.3e+02      43      70 ..      49      76 ..      37      86 .. 0.82
   2 !  156.5   0.0   3.8e-50   2.3e-46       2     119 ..     389     505 ..     388     506 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.14
                HHHT-EEEEE--S---SSS-SSS----- CS
    TyrRSs_C 43 iakkgayvgsrpgkkkgekedelsftpi 70
                i++ gayvg+ p++++ + ++ l f+p+
  CCE26638.1 49 IKRIGAYVGVDPTADSLHIGHLLPFMPL 76
                5778*********888888888888775 PP

  == domain 2  score: 156.5 bits;  conditional E-value: 3.8e-50
                 TTTSTT-EEEE--GGGGGS-SHHHHHHHTTS-STHHHHHHHHHHT-EEEEE--S---SSS-SSS--------SHHHHHHHTT-SS-EEEEESSS-EEEE CS
    TyrRSs_C   2 tlanapkvdvkLPksLvlnksiariLyaaGLasskseghrliakkgayvgsrpgkkkgekedelsftpiktwkpeetkkflidgklLiLrkGkwkvrii 100
                 t+++ap++d++LP+s v++ s a+iL+aaGL+ s+seg+r+++++gay++++pg+++g  +++l++tpik+w+peet+++lidg++LiLrkGk+++ri+
  CCE26638.1 389 TANTAPRSDIQLPQS-VMKLSPAKILFAAGLVGSSSEGQRIVTAEGAYIAAQPGQTRGLVPGNLNWTPIKMWFPEETSRYLIDGTMLILRKGKHNIRIV 486
                 7899***********.9********************************************************************************** PP

                 E---HHHHHHHTTTSHHHH CS
    TyrRSs_C 101 eivsDeefeasgltapgee 119
                 e++sD+e+++sg+t+pge+
  CCE26638.1 487 ELISDAEWKQSGKTYPGEP 505
                 *****************86 PP

>> Ribosomal_S8  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0001      0.62      20      57 ..      11      49 ..       1      58 [. 0.71
   2 ?    1.4   0.0     0.048   2.9e+02       9      46 ..     386     423 ..     384     442 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0001
                  EEEEE--HHHHHHHHHHHHCTSEEEEEEE.CCCCCCEEE CS
  Ribosomal_S8 20 evevpasklkeeilkvLkeeGyikdfeve.eekkkkiki 57
                  ++e      ++++l+vL+e+Gyikd++ + e+ k++++i
    CCE26638.1 11 KAERIRNGEERHVLDVLEERGYIKDMTGTrENMKEIMRI 49
                  555555556789**************9984444555555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.048
                   HHHHHHHTT-SEEEEE--HHHHHHHHHHHHCTSEEEEE CS
  Ribosomal_S8   9 rirNaekakkeevevpasklkeeilkvLkeeGyikdfe 46 
                    i  a++a ++ +++p+s +k + +k+L   G + + +
    CCE26638.1 386 GIVTANTAPRSDIQLPQSVMKLSPAKILFAAGLVGSSS 423
                   577899999********************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4375.93
//
Query:       CCE26639.1  [L=143]
Description: related to succinate dehydrogenase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-50  168.7   0.0    5.4e-50  168.5   0.0    1.0  1  CybS      CybS, succinate dehydrogenase cytochrome B small su


Domain annotation for each model (and alignments):
>> CybS  CybS, succinate dehydrogenase cytochrome B small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.5   0.0     3e-54   5.4e-50       3     133 .]      12     142 ..      10     142 .. 0.98

  Alignments for each domain:
  == domain 1  score: 168.5 bits;  conditional E-value: 3e-54
        CybS   3 klklipqppggvsgtvndaakvpepsksegsyhwtleRivavglvpltvvplvagslspvlDavlavlllihshlgfesciiDYipkrvygklhklahy 101
                 +  ++p+ p+ + g vnd+a+vp+ps+ +gs+hwt+eR++a+glvpl ++p+v+gsl+p++Da+l++++lihsh+gf++++iDYipkr y+ l+kl+ +
  CCE26639.1  12 RCAILPPGPQRIIGGVNDPAPVPTPSPAHGSFHWTFERLIAAGLVPLSIAPFVSGSLNPTMDAILCSAMLIHSHMGFQAVVIDYIPKRTYPGLRKLFWW 110
                 567899********************************************************************************************* PP

        CybS 102 lLalgtvlslvGlYeletednGltelvkklws 133
                  L+++t+  ++GlYe+et+d+G+te++k++w+
  CCE26639.1 111 GLNAATLTVGIGLYEFETNDVGVTEAIKRVWK 142
                 *******************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1135.04
//
Query:       CCE26640.1  [L=845]
Description: related to S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-162  541.6   0.0   1.5e-162  541.2   0.0    1.2  1  DUF3419          Protein of unknown function (DUF3419)
    1.2e-15   57.8   0.0    6.1e-13   48.9   0.0    2.8  3  Methyltransf_23  Methyltransferase domain
    5.9e-08   33.4   0.0      5e-07   30.4   0.0    2.4  2  Methyltransf_12  Methyltransferase domain
    8.5e-08   32.8   0.0    3.3e-05   24.5   0.0    3.7  4  Methyltransf_25  Methyltransferase domain
    3.9e-07   30.6   0.0    0.00077   20.1   0.0    3.9  4  Methyltransf_11  Methyltransferase domain
    3.3e-06   26.6   0.1      0.018   14.4   0.0    2.8  3  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    3.9e-06   26.7   0.0    2.9e-05   23.9   0.0    2.2  2  Methyltransf_31  Methyltransferase domain
     0.0041   16.9   0.0      0.015   15.0   0.0    1.9  3  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> DUF3419  Protein of unknown function (DUF3419)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  541.2   0.0  6.8e-166  1.5e-162       2     385 .]     427     821 ..     426     821 .. 0.98

  Alignments for each domain:
  == domain 1  score: 541.2 bits;  conditional E-value: 6.8e-166
     DUF3419   2 keeqFkdeliYaftWEDprvdeeaLklepddrvlaItSaGdNaLsYllaspkrihaVDlNpaqnaLleLKlaairalsyedfwklfGegkhenfeelle 100
                 k++qF+de+iYaftWED+rvde +Lkl p+d+vlaI+SaGdN+LsYl++sp+r+haVDlNp+qn+LleLK aa++al+yedfwk+fG+gkh++f++ll 
  CCE26640.1 427 KHKQFNDEYIYAFTWEDARVDEWLLKLGPEDKVLAISSAGDNILSYLAQSPARVHAVDLNPTQNHLLELKAAAYTALPYEDFWKMFGDGKHDQFRALLV 525
                 89************************************************************************************************* PP

     DUF3419 101 kklsphLsseafqyWekraekvFss.kgkglyetGgsgrairlarllfrllglrkdvkklleaktleeqreiwekkirplllsklvsklvlsneafllk 198
                 +klsphLs++afq+W +++ +vF++ +g gly+tGgs++air++r+++rl+glr ++++llea+tl+eqre+w++k+rp+llsklvs+lv+ +e+fl++
  CCE26640.1 526 NKLSPHLSARAFQFWLSNT-HVFQNkSGYGLYDTGGSRHAIRAMRWVARLFGLRGTINRLLEARTLNEQREVWRHKVRPALLSKLVSNLVVAQESFLWS 623
                 *******************.9***9999*********************************************************************** PP

     DUF3419 199 alGvpknqlellekes.................gesvaeyvvdtldpvaeksllsedNyFyllaltgkytkeclPeyLkeeafeklkkrakraldelrl 280
                 alGvpknql+++ek++                 ++++++y+v+tldpvae+++l++dN++y+++l+gk++++c+P+yL+++ ++kl+k++  ald+lr+
  CCE26640.1 624 ALGVPKNQLAMIEKDHaesdlvkgdkpvakntrSHAIWHYMVNTLDPVAEHTHLAKDNPYYYVCLAGKFSRKCHPHYLTPDVHAKLSKPG--ALDGLRI 720
                 *************9955789999*******************************************************************..99***** PP

     DUF3419 281 htdeleevlarlkkksltravllDhmDWled..eeleeeiqelnralkpggrvllRsaaeepwyakrfeklgFkvkavaaresgeeekeleaiDrvnmY 377
                 htdeleev+ar+++++lt+av++D+mDW++   ++++++i++lnralk+ggrv+lR++a++pwy+k fe++gF++k+++ r +g+      +iDrvnmY
  CCE26640.1 721 HTDELEEVIARITPGTLTVAVVMDSMDWFDPgsSAAAAQITKLNRALKMGGRVMLRTSALTPWYIKIFEAHGFTAKRHGGRIDGA------CIDRVNMY 813
                 *****************************6488****************************************************......******** PP

     DUF3419 378 asfwiatk 385
                 as+wi+tk
  CCE26640.1 814 ASCWICTK 821
                 ******97 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   2.7e-16   6.1e-13       9     151 ..     114     294 ..     108     300 .. 0.81
   2 !    5.5   0.0    0.0062        14      13      62 ..     450     516 ..     426     593 .. 0.76
   3 ?   -2.1   0.0       1.4     3e+03     102     121 ..     760     779 ..     735     799 .. 0.80

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2.7e-16
  Methyltransf_23   9 lsdklerllpklraggrvLdiGcGtGillevlreng.....f.svtgvDlspeaveiae................................... 61 
                      ++++++ +++k++++  ++diG GtG + e + +++     f +v++vD sp + + a+                                   
       CCE26640.1 114 AKAERATAAGKNQTKRIWVDIGGGTGWNIEAMGRFVsvpdfFsHVYLVDFSPSLCGVAQkrferlgwknvtvvcedarkfrledyesgmspaqn 207
                      56777888999*********************886433332469**********99999******99999888877777766666666666654 PP

  Methyltransf_23  62 ....kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkpgGylllseplaslkedrllldwlylvpagrhisffsarsl 151
                              ++k      +  + qg  dl++++++l  +pd+ ++++++ +ll+p+G + + ++ +  k d ++++++  + + rh++  s+  +
       CCE26640.1 208 llrsPLLSYFK------QQNPRQGGADLVTMSYSLSMIPDYYSVVDSVISLLSPDGIFGVVDFYVQNKVDYSFRNYTGGALD-RHVNALSRMFW 294
                      44422222233......3347999**************************************988889********999999.99998886555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0062
  Methyltransf_23  13 lerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.....................k 62 
                      l++    l +  +vL i  +  + l++l++ ++ v +vDl+p +++++e                     k
       CCE26640.1 450 LLK----LGPEDKVLAISSAGDNILSYLAQSPARVHAVDLNPTQNHLLElkaaaytalpyedfwkmfgdgK 516
                      333....3457899999***************************999987666666666555555544440 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.4
  Methyltransf_23 102 lrqiatllkpgGylllsepl 121
                      ++++++ lk gG+++l++++
       CCE26640.1 760 ITKLNRALKMGGRVMLRTSA 779
                      6788999999****999974 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   2.2e-10     5e-07       1      99 []     132     259 ..     132     259 .. 0.88
   2 ?   -0.7   0.0       1.1   2.4e+03      10      42 ..     469     499 ..     463     508 .. 0.73

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2.2e-10
  Methyltransf_12   1 LeiGcGtGsllrallekl....pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.........................s 65 
                      ++iG+GtG +++a+ +       +++++ vD+sps +  a++++ + + +n+++v  +a+    +d +                         +
       CCE26640.1 132 VDIGGGTGWNIEAMGRFVsvpdFFSHVYLVDFSPSLCGVAQKRFERLGWKNVTVVCEDARKFRLEDYEsgmspaqnllrspllsyfkqqnprqG 225
                      59************99999998899999*********999999999987766665555444333333377************************ PP

  Methyltransf_12  66 sfDlvvasnvlhhlkdirevldnirklLkpgGrl 99 
                        Dlv++s  l+ ++d  +v+d++ +lL+p+G++
       CCE26640.1 226 GADLVTMSYSLSMIPDYYSVVDSVISLLSPDGIF 259
                      ********************************85 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.1
  Methyltransf_12  10 llralleklpdieytgvDispsaiedakeklak 42 
                      +l++l+++  ++++++vD++p + +  + k a+
       CCE26640.1 469 ILSYLAQS--PARVHAVDLNPTQNHLLELKAAA 499
                      45566666..99********9988655555555 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.5e-08   3.3e-05       2      62 ..     132     197 ..     132     208 .. 0.91
   2 ?    2.1   0.0      0.15   3.3e+02      61      97 .]     223     257 ..     212     257 .. 0.87
   3 ?    0.6   0.0      0.41   9.2e+02      11      38 ..     469     494 ..     460     534 .. 0.80
   4 ?   -1.8   0.0       2.4   5.4e+03      63      97 .]     735     771 ..     707     771 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.5e-08
                      EEET-TTSHHHHHHHCTS..T..SSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSST CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl..g..kakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfed 62 
                      +d+G GtG +++a+ + +  +   ++v+ vD+s++++  a++r+e+ g+ nv++v+ da+++ +ed
       CCE26640.1 132 VDIGGGTGWNIEAMGRFVsvPdfFSHVYLVDFSPSLCGVAQKRFERLGWkNVTVVCEDARKFRLED 197
                      59************9998763689*********************9999************98876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.15
                      STTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  61 edgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                       +g  Dlv++s++l++++  d+  +++ + ++L p+G
       CCE26640.1 223 RQGGADLVTMSYSLSMIP--DYYSVVDSVISLLSPDG 257
                      56789******9999987..889************99 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.41
                      HHHHHHCTSTSSEEEEEESSHHHHHHHH CS
  Methyltransf_25  11 ltlalakrlgkakvtgvDiseemleaar 38 
                      ++ +la+  + a+v++vD+++++    +
       CCE26640.1 469 ILSYLAQS-P-ARVHAVDLNPTQNHLLE 494
                      44556666.4.********998766555 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.4
                      TTEEEEEEESTGGGSSHH..HHHHHHHHHHHHEEEEE CS
  Methyltransf_25  63 gsfDlvvssgalhhlsde..dlekalkeiarvLkpgG 97 
                      g+  + v++ ++ ++++    +++ + ++ r+Lk gG
       CCE26640.1 735 GTLTVAVVMDSMDWFDPGssAAAAQITKLNRALKMGG 771
                      5555566655577776541144556889999999998 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.4e-07   0.00077       1      59 [.     132     197 ..     132     202 .. 0.90
   2 ?    3.8   0.0     0.041        92      62      94 ..     227     259 ..     217     261 .. 0.92
   3 ?    1.3   0.0      0.24   5.4e+02       9      36 ..     468     495 ..     460     515 .. 0.78
   4 ?   -1.5   0.0       1.9   4.2e+03      78      95 ..     757     774 ..     727     775 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.4e-07
                      EEET-TTSHHHHHHHHTT......SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-T CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg......arvvgvDlskemlklakekaseegl.kvefvvadaeklpfed 59 
                      +d+G GtG + ea+ + +      ++v+ vD+s+ +  +a+++ ++ g  +v++v++da+k+ +ed
       CCE26640.1 132 VDIGGGTGWNIEAMGRFVsvpdffSHVYLVDFSPSLCGVAQKRFERLGWkNVTVVCEDARKFRLED 197
                      59*************555555666***********************99************99998 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.041
                      EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11  62 fDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                       Dlv++s +l  ++d  ++++ +  +L p+G++
       CCE26640.1 227 ADLVTMSYSLSMIPDYYSVVDSVISLLSPDGIF 259
                      7******************************97 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.24
                      HHHHHHHHTTSEEEEEES-HHHHHHHHH CS
  Methyltransf_11   9 rlaealakrgarvvgvDlskemlklake 36 
                       ++ +la+  arv +vDl++++  l + 
       CCE26640.1 468 NILSYLAQSPARVHAVDLNPTQNHLLEL 495
                      5678889888*********998766554 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.9
                      HHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  78 ekalkeiaRvLkpgGllv 95 
                      ++ + ++ R Lk gG+++
       CCE26640.1 757 AAQITKLNRALKMGGRVM 774
                      555678899******987 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.9e-06     0.018      47     114 ..     125     197 ..      71     203 .. 0.72
   2 !    8.9   0.0   0.00037      0.84     114     155 ..     224     265 ..     217     284 .. 0.85
   3 ?   -2.6   0.0       1.2   2.7e+03     137     155 ..     761     778 ..     756     790 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.9e-06
                      -TT..EEEEES-TT-HHHHHHHHHHHHHH...EEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS- CS
  Ubie_methyltran  47 rga..kvlDvagGtgDlafklsdsvgekg...kvvvlDinenmLkvgekklkeegkinieflqanaeeLpfed 114
                      + +    +D+ gGtg    ++ + v       +v ++D+++++  v++k+ ++ g +n+  ++ +a ++  ed
       CCE26640.1 125 NQTkrIWVDIGGGTGWNIEAMGRFVSVPDffsHVYLVDFSPSLCGVAQKRFERLGWKNVTVVCEDARKFRLED 197
                      22233568******9766667776654434679**********************************998887 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00037
                      -T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE- CS
  Ubie_methyltran 114 ddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefs 155
                      ++  D+vt+s+ l  ++D+  ++ ++   l p G++ v++f 
       CCE26640.1 224 QGGADLVTMSYSLSMIPDYYSVVDSVISLLSPDGIFGVVDFY 265
                      5678**********************************9995 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.2
                      HHHHHHEEEEEEEEEEEE- CS
  Ubie_methyltran 137 keayrvlkpGGrlvvlefs 155
                       ++ r lk GGr++ l +s
       CCE26640.1 761 TKLNRALKMGGRVM-LRTS 778
                      56789******986.5555 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.3e-08   2.9e-05       9     121 ..     133     273 ..     127     298 .. 0.86
   2 ?   -0.9   0.0      0.56   1.3e+03      93     121 ..     759     787 ..     750     806 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.3e-08
  Methyltransf_31   9 DlGCGtGeltfelae..elgp.kaevvGiDiseeaielArenaqklgldnveFeqgdieelekl.led........................ek 74 
                      D+G GtG  + ++ +   + +  ++v+++D+s+    +A+++ ++lg +nv++  +d+ ++    +e                           
       CCE26640.1 133 DIGGGTGWNIEAMGRfvSVPDfFSHVYLVDFSPSLCGVAQKRFERLGWKNVTVVCEDARKFRLEdYESgmspaqnllrspllsyfkqqnprqGG 226
                      7777777777777755433224578***********************************985555559******************9999999 PP

  Methyltransf_31  75 fDlilsnevlnaladpdkileeiervlkpggilliedprllaelpak 121
                       Dl++    l  ++d  ++  +++++l+p+gi+ + d+ ++ +++++
       CCE26640.1 227 ADLVTMSYSLSMIPDYYSVVDSVISLLSPDGIFGVVDFYVQNKVDYS 273
                      ***********************************999977776644 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.56
  Methyltransf_31  93 ileeiervlkpggilliedprllaelpak 121
                       + ++ r+lk gg++++++  l  +++++
       CCE26640.1 759 QITKLNRALKMGGRVMLRTSALTPWYIKI 787
                      567899***********999866666655 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.8e-06     0.015      78     135 ..     132     192 ..     120     195 .. 0.89
   2 ?   -3.6   0.0       3.5   7.8e+03      62      82 ..     443     464 ..     391     470 .. 0.67
   3 ?   -3.2   0.0       2.7   5.9e+03     150     171 ..     755     775 ..     753     777 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.8e-06
                 EEES-TTSHHHHHHHHHHCTTC...EEEEEESBHHHHHHHHHHHHHCTTCSEEEEES-GGG CS
        PCMT  78 LevGsGsGyltavlarlvgekg...rvvsierikelveeakrnlkkldlenvivvvgDGrk 135
                 +++G+G+G++   + r+v       +v  ++ +++l+  a+++ ++l+ +nv+vv+ D rk
  CCE26640.1 132 VDIGGGTGWNIEAMGRFVSVPDffsHVYLVDFSPSLCGVAQKRFERLGWKNVTVVCEDARK 192
                 69**************9986433568999****************************9875 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.5
                 HHHHHHHTT.--TT-EEEEES- CS
        PCMT  62 valalelle.lkkgarvLevGs 82 
                  a++ e+l  l + ++vL + s
  CCE26640.1 443 DARVDEWLLkLGPEDKVLAISS 464
                 4666677655999999998865 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.7
                 SBBSS--HHHHHTEEEEEEEEE CS
        PCMT 150 aaapeiPealidQLkeGGrlvv 171
                 aaa +i ++l + Lk GGr+++
  CCE26640.1 755 AAAAQI-TKLNRALKMGGRVML 775
                 666666.578999******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 6200.47
//
Query:       CCE26641.1  [L=619]
Description: related to NGG1-general transcriptional adaptor or co-activator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-53  178.6   0.1    5.6e-53  178.6   0.1    2.7  2  Ada3      Histone acetyltransferases subunit 3


Domain annotation for each model (and alignments):
>> Ada3  Histone acetyltransferases subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.2   8.5         1   1.8e+04      11     103 ..      39     129 ..      27     187 .. 0.65
   2 !  178.6   0.1   3.1e-57   5.6e-53       2     132 .]     430     565 ..     429     565 .. 0.96

  Alignments for each domain:
  == domain 1  score: -6.2 bits;  conditional E-value: 1
        Ada3  11 kqELreiGilepeedad.kydgredDevaaeLrrlqaeLrevsliNgarkarLlelvkermayqeyqtiledlDkqvqqaYlKrtrtlkkkkkk 103
                 k+ L + +++++++ +    d++  D  +++L++l + + + +++  +  ++L+e  k+r +  e++    d++ + +    +r+r  + +  +
  CCE26641.1  39 KRNLSYEDLVDQSAVHAmVPDSKSVDAMLEKLKNLVNVMEKRATFYDRGMRNLAEDRKKRTENLELS---LDVEPEGKRTKARRKRAAEAQAED 129
                 6777777777755555555677788888888888877777777777777666666666666665554...344444444444555555444444 PP

  == domain 2  score: 178.6 bits;  conditional E-value: 3.1e-57
        Ada3   2 dyaqleeRlkqELreiGilepeedadkydgredDevaaeLrrlqaeLrevsliNgarkarLlelvkermayqeyqtiledlDkqvqqaYlKrtrtlkkk 100
                 +y q++eRlkqELr iG+l +e+ + +ydg++dDeva +Lr+lq++L+e++liNgarkarL++lv+erma qeyqtiledlD qvq aYlKrtrt++k+
  CCE26641.1 430 EYMQVDERLKQELRFIGFLPQEDFEGEYDGHYDDEVAGRLRLLQSRLKEQMLINGARKARLTDLVRERMANQEYQTILEDLDAQVQVAYLKRTRTMGKT 528
                 89*****************76666659************************************************************************ PP

        Ada3 101 kkkkrsga.....aaaaaaagaarpgigdalralmer 132
                 kk kr+g+     +  ++aag+arpgigd++++lmer
  CCE26641.1 529 KKAKRPGGagggsHFVGGAAGTARPGIGDQTKTLMER 565
                 ******999999989999******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1223  (0.0682135); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4146.61
//
Query:       CCE26642.1  [L=892]
Description: probable urease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-67  227.4   0.4    7.6e-53  180.0   0.8    2.4  2  Amidohydro_1  Amidohydrolase family
    2.5e-56  189.2   2.6    5.6e-56  188.1   2.6    1.6  1  Urease_alpha  Urease alpha-subunit, N-terminal domain
    4.9e-40  135.5   0.4    2.4e-39  133.3   0.1    2.1  2  Urease_beta   Urease beta subunit
    6.4e-39  132.3   0.1    1.8e-38  130.8   0.1    1.8  1  Urease_gamma  Urease, gamma subunit
    6.5e-11   42.4   0.8    0.00025   20.7   0.0    3.8  4  Amidohydro_3  Amidohydrolase family
  ------ inclusion threshold ------
      0.076   12.8   0.0       0.19   11.5   0.0    1.7  1  Amidohydro_2  Amidohydrolase


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.0   0.8   2.5e-56   7.6e-53       1     284 [.     412     690 ..     412     696 .. 0.97
   2 !   44.5   0.0   4.2e-15   1.2e-11     275     333 ..     721     775 ..     707     794 .. 0.81

  Alignments for each domain:
  == domain 1  score: 180.0 bits;  conditional E-value: 2.5e-56
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH....HHHHHHHHHHTSSSEEEEEEESSEGGSGCCCS CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst....giealleaaeelplglrilggkvsldrgsaet 93 
                   iv++G+ID+HvH+              ++p+++ eal+sgi+t++++Gt++ a++ att+t    ++ ++l+a++ lpl++++ g+      gs+ +
    CCE26642.1 412 IVTAGGIDTHVHF--------------ICPQQVDEALASGITTMIGGGTGPSAGTKATTCTpgkrHLGLMLQACDTLPLNIGLTGK------GSDAS 488
                   79***********..............***********************************************************......***** PP

                   HHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE..TSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHC CS
  Amidohydro_1  94 skasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHa..letkgevedaeaafgetiehgthlevaeslglldei 188
                   + a+re++ aga              +l+ he++++++++l+++l+++++ d++ + H+  l+++g+ve+++aa  +++ h++h e+a++++++d++
    CCE26642.1 489 PVALREQITAGA-------------CGLKIHEDWGATPAALDACLDACDELDVQCTLHTdtLNESGFVEQTLAAVRGRTVHTYHSEGAGGGHAPDIL 572
                   ************.............8*********************************************************************** PP

                   CEEEHCTCEEE...HH...HHHHHHHHHHHHCEE.........HHHHHHHHSEHHHHHHHHHHHH.TSCEEEEEECTTSSCCGGHHHH...HHHHHH CS
  Amidohydro_1 189 klilahgvhlt...pt...eaellkerlkeagva.........hcpfsnsilrsgrealrkalde.GvkvglgtDgaasgnslnllee...lrlalk 266
                    ++ + +v++    pt   + ++l+e+l++ +v+         +++f++s++r +++a++++l++ G+ +++++D++a+g++++++ +   ++++ k
    CCE26642.1 573 SVVGHPNVLPAsttPTrpyTRNTLDEHLDMLMVChhlsrripeDVAFAESRIRAETMAAEDVLHDtGAVSIMSSDSQAMGRCGEVILRtwnTAHKNK 669
                   ***********76655999********************************************************************99******** PP

                   HHHHCCTT...TTHCHCHHHH CS
  Amidohydro_1 267 lqrgllye...deegglslke 284
                   lqrg l e   d+++g+s + 
    CCE26642.1 670 LQRGPLPEdrlDSAAGMSSSS 690
                   ********9999999999876 PP

  == domain 2  score: 44.5 bits;  conditional E-value: 4.2e-15
                   TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEE CS
  Amidohydro_1 275 deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgn 333
                    ++++ ++ ++++++Tin+A+a+g+++ vGs+e+ k ADlv++     +a++g+k++  
    CCE26642.1 721 APNDNRRVRRYIAKYTINPAIAHGISHLVGSLEPNKLADLVLW----DPALFGTKPSLI 775
                   568888999**********************************....666666665543 PP

>> Urease_alpha  Urease alpha-subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.1   2.6   1.9e-59   5.6e-56       2     121 .]     287     406 ..     286     406 .. 0.99

  Alignments for each domain:
  == domain 1  score: 188.1 bits;  conditional E-value: 1.9e-59
  Urease_alpha   2 klsreeyaelyGptvgDrvrLadtellievekDltvyGeevkfGggkviRdgmgqssaakeeealDlvitnavilDatgivkadigikdgrivaiGk 98 
                   +++r++ya+++Gpt+gD vrL++t+l+i+ve+D+t+yG+e+kfGggk++Rdgmgq+s ++++++lD+v+tna+i+D+tgi+kadigikdg iv+iGk
    CCE26642.1 287 QMDRAAYATMFGPTTGDLVRLSNTNLWIQVERDMTSYGDECKFGGGKTLRDGMGQASGRRDADTLDVVVTNALIVDWTGIYKADIGIKDGMIVGIGK 383
                   799********************************************************************************************** PP

  Urease_alpha  99 agnpdvmdgvdeelvigastevi 121
                   agnpdvmdgv +++v+g++t+v+
    CCE26642.1 384 AGNPDVMDGVAPNMVVGSCTDVV 406
                   *********************96 PP

>> Urease_beta  Urease beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.52   1.6e+03      50      67 ..      21      38 ..      13      45 .. 0.83
   2 !  133.3   0.1     8e-43   2.4e-39       1      97 [.     139     237 ..     139     238 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.52
                 -HHHHTTEEE-SSTT-EE CS
  Urease_beta 50 dRekalGlrldipagtav 67
                 +R+ a+G+rl+ + +ta+
   CCE26642.1 21 QRRLARGVRLNHSEATAL 38
                 7999*******9988885 PP

  == domain 2  score: 133.3 bits;  conditional E-value: 8e-43
                  TT-EE-SSSEEETTTT..---EEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-STT-EE-STTSS-- CS
  Urease_beta   1 pgeiiteegeielnag..retiklkvantgdrpiqvgshyhflevnkaLefdRekalGlrldipagtavrfepgeekevelvelaGerkvyGlnglvn 96 
                  pg++++ +g+++ln+   r + +l+v++tgdrpiqvgshyhf+evn++LefdRe+a+G+rldipagt+vrfepg++k+v+lv+++G+r ++G n+ ++
   CCE26642.1 139 PGAVVVVKGTVALNQTpkRARRRLRVTSTGDRPIQVGSHYHFIEVNPQLEFDRERAYGFRLDIPAGTSVRFEPGDTKTVRLVAIGGHRIIRGGNNVAS 236
                  899999999****9864488999***********************************************************************9987 PP

                  E CS
  Urease_beta  97 g 97 
                  g
   CCE26642.1 237 G 237
                  7 PP

>> Urease_gamma  Urease, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.1     6e-42   1.8e-38       1      99 []       1     100 [.       1     100 [. 0.99

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 6e-42
                   ----HHHHHHHHHHHHHHHHHHHHHTT--B-HHHHHHHHHHHHHHHHHCT.S-HHHHHHHHCCSS-CCCB-TTCHHH-SEEEEEEEETTEEEEEEEE CS
  Urease_gamma   1 mkLtpreldkLllfaaaelAqkrlarGlkLnhpEavaliasevlelardg.ksvaelmelgkklLtredvldgvaelleevqveatfpdgtkLvtvh 96 
                   m+L+preldkL++++++ lAq+rlarG++Lnh+Ea+alia++++el+rdg +sva+lm lg+++L+r++vl+ v ++l+e+qve+tfp gt Lvtvh
    CCE26642.1   1 MHLVPRELDKLVISQLGLLAQRRLARGVRLNHSEATALIANNLQELIRDGnHSVADLMLLGTTMLGRRHVLPAVCSTLRELQVEGTFPMGTFLVTVH 97 
                   9*************************************************999******************************************** PP

                   S-S CS
  Urease_gamma  97 dpi 99 
                   +pi
    CCE26642.1  98 NPI 100
                   **9 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   3.3e-06    0.0099       1      24 [.     404     427 ..     404     457 .. 0.78
   2 ?   -0.2   0.0      0.18   5.3e+02     239     285 ..     483     536 ..     465     554 .. 0.71
   3 ?    0.9   0.0     0.084   2.5e+02      46      93 ..     557     606 ..     538     656 .. 0.66
   4 !   20.7   0.0   8.2e-08   0.00025     404     457 ..     722     775 ..     699     784 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.3e-06
  Amidohydro_3   1 eviDakGrlvlPGFvDsHtHlagg 24 
                   +v+ a+G++v++G++D H H +  
    CCE26642.1 404 DVVAAEGKIVTAGGIDTHVHFICP 427
                   5999****************6644 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.18
  Amidohydro_3 239 dgvlgsrtalltepyf..tgwpdfe.....dealaelvaaadergldvaihaig 285
                   +g+ +s++al  + ++  +g +++e      +al ++++a+de ++++ +h+++
    CCE26642.1 483 KGSDASPVALREQITAgaCGLKIHEdwgatPAALDACLDACDELDVQCTLHTDT 536
                   455566666655555588888888755443445******************986 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.084
  Amidohydro_3  46 tavrdqagttpkgrwivgeGw..deaqfaeerfpyalaeldevledapvl 93 
                   t + + ag  ++++ ++++G+    ++ +++  py+++ lde l   +v+
    CCE26642.1 557 TYHSEGAGGGHAPDILSVVGHpnVLPASTTPTRPYTRNTLDEHLDMLMVC 606
                   4444555666899999999998888889999999********97776664 PP

  == domain 4  score: 20.7 bits;  conditional E-value: 8.2e-08
  Amidohydro_3 404 pdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppel 457
                   p+    ++  +a yT +pA a g ++  G+Le+ + ADlv++d +++  +p+ +
    CCE26642.1 722 PNDNRRVRRYIAKYTINPAIAHGISHLVGSLEPNKLADLVLWDPALFGTKPSLI 775
                   55556677889***************99*****************999998755 PP

>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.4e-05      0.19      92     153 ..     482     559 ..     418     610 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.4e-05
                   TSSHCHHHHHHHHHHHHTTECEEEEESSTTTCCTTTCGGHHHHHHHHHHHT-EEEEE.........................C CS
  Amidohydro_2  92 pldpedaaaeleraveelgfkGvrlnphvggddllgdrldrpifealeelglpvdihtGps.....................p 153
                       ++   +l++++  +g++G++++ ++g  +   ++ld  ++ a+ el++ + +ht +                      +
    CCE26642.1 482 GKGSDASPVALREQI-TAGACGLKIHEDWGATP---AALD-ACLDACDELDVQCTLHTDTLnesgfveqtlaavrgrtvhtyH 559
                   555566778999***.**************555...4556.999*************87666666665555555544444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (892 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 6220.96
//
Query:       CCE26643.1  [L=340]
Description: related to nonhistone chromosomal protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-08   32.4   0.3    2.7e-07   30.9   0.3    1.9  1  HMG_box    HMG (high mobility group) box
     0.0026   18.3   0.2     0.0026   18.3   0.2    2.1  2  HMG_box_2  HMG-box domain


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.3     3e-11   2.7e-07       1      69 []     138     207 ..     138     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 3e-11
                 --SS--HHHHHHHHHHHHHHHH.STTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkae.nPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69 
                 pkRpl+ +fl++++ r  ++    +e+   ++  +  ++W +++++eKk +  +++     y++ +  yk
  CCE26643.1 138 PKRPLTPYFLYMQHARSIIANDlGTEAPKGAVQEEGQRRWANMTPSEKKGWNTAYQYNLRLYNARVHSYK 207
                 8******************9873677889***************************99999999988886 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   2.9e-07    0.0026       1      54 [.     135     188 ..     135     195 .. 0.88
   2 ?   -3.9   0.9         2   1.8e+04      57      68 ..     321     332 ..     313     336 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.9e-07
                 ---.-SS--HHHHHHHTTHHHHHHH.T---SSHHHHTGGGHHHHHHS-HHHHHHH CS
   HMG_box_2   1 pkkpkaarnAYalfvqemipelkrk.GnpviglaevsklcsekWkalseeeKekY 54 
                 p+ pk++   Y+l++q  +  + +  G   ++ + v+++   +W+++  +eK+ +
  CCE26643.1 135 PNAPKRPLTPYFLYMQHARSIIANDlGT-EAPKGAVQEEGQRRWANMTPSEKKGW 188
                 789******************9999444.566678*****************966 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2
                 HHHHHHHHHHH- CS
   HMG_box_2  57 kAkedkkrydre 68 
                 kA edk++ ++ 
  CCE26643.1 321 KAPEDKEEPKKS 332
                 566666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       875  (0.0488036); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2460.17
//
Query:       CCE26644.1  [L=940]
Description: related to Het-c protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-237  788.8   0.0     4e-237  788.3   0.0    1.2  1  Het-C      Heterokaryon incompatibility protein Het-C


Domain annotation for each model (and alignments):
>> Het-C  Heterokaryon incompatibility protein Het-C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  788.3   0.0  2.2e-241    4e-237       4     560 ..      12     568 ..       9     569 .. 0.95

  Alignments for each domain:
  == domain 1  score: 788.3 bits;  conditional E-value: 2.2e-241
       Het-C   4 lalllvllaskaaafGaGniasiskvegknwRhGDiedvlktlal...lkgkkftkldvkrvYfGnWLrDysqavDvgtlkkvsaetirilvwvlsfla 99 
                  +++lv+l+ +aaafGaGni s+skveg+nwRhGDied+l tla+   +k kkf+k++v+rvYfGnWLrDysqa+Dvgt+k+vsae+ir+l++vl+fl+
  CCE26644.1  12 GFIVLVALVGPAAAFGAGNIGSTSKVEGQNWRHGDIEDALLTLAMaqaMKHKKFNKIMVSRVYFGNWLRDYSQAIDVGTVKTVSAEAIRLLLCVLGFLT 110
                 4569*****************************************555555************************************************ PP

       Het-C 100 fGyateefevteeRLgvYrpeehiDnPkgYadnedareydrrLRgpvde.releidpetGmknYianeeggwatsagyvreslarsielgrlytsgskk 197
                 fGy+++efevt++RLg+Yrpe+hiDnPk+Yadn+dar+yd+rLRgp+de rel+idpe+GmknYian++ g+ ts+++vr+ ++r+ielgr+y     k
  CCE26644.1 111 FGYGSGEFEVTADRLGCYRPEDHIDNPKNYADNKDARQYDNRLRGPIDEdRELAIDPESGMKNYIANDRVGIMTSSQHVRNLFTRCIELGRNY-----K 204
                 ************************************************99*******************************************.....7 PP

       Het-C 198 kkgkeedllealRllGqalhtleDfaahsnyvelaLrelgekevfphvGkntkiklegkk..vyPlvtGtfGgvDflhsvlGeasDkltqsevdeldaa 294
                 ++g++ dl+ealRl+G++lh+leDf ahsny+elaL+e+ge++vfphvG++t+++leg++  vyP+vtGtfGgvDflhsv+Ge+sDk+tq+e++el+ +
  CCE26644.1 205 NNGNKPDLYEALRLMGTGLHCLEDFLAHSNYCELALIEMGERDVFPHVGSETRMRLEGANdeVYPIVTGTFGGVDFLHSVVGEVSDKMTQNEIEELEGT 303
                 899*****************************************************998777************************************* PP

       Het-C 295 leeaekssssssksalksllsklp...gtgddlaeeaeelkakseaqeaenasaseskanavpgvspnfdpeevakkiypilefrDkvvksiseaieki 390
                 l+++++s+    +s l++ll+k+p     g+++ ++++e++ ++++ + en+s+s  + ++      ++  ++v+++i+p +ef+D+++ksi++a+e+i
  CCE26644.1 304 LQDSKNSD----TSLLRELLDKIPdslFGGKSQKNRIDEIQGNAASSQLENMSVSPRNPEEF-----TVYVQQVYSQIMPAIEFHDDIMKSITSAVENI 393
                 ***99888....799*********88844778999****************95444443333.....345689************************** PP

       Het-C 391 pglekliekisetltvfvlsllaPfvrPiikqvskelkegsseviessakeqfevfedpkctdPthslLskDhfsniLnepaGkvaaaivkyvvprvle 489
                 p+l+k+ie+++e+l+ fv+s++aP v P+i+qv++el +gs evi+ss++eq+ vfe+++ctdPths+LskDhfsniLne aG++aa++v+++vp+++e
  CCE26644.1 394 PVLPKIIEQLEEQLSRFVFSIMAPVVVPLIRQVKNELATGSGEVIKSSEDEQHVVFENDRCTDPTHSMLSKDHFSNILNEIAGRTAAKMVTWTVPQLME 492
                 *************************************************************************************************** PP

       Het-C 490 awedeevdvdevlddvle.vfhhPalrdees....eiqremfetvekWveeksdeeeelkelLssesvkegknhke 560
                 a++++++dv++++d++++ ++hhPa+r+  +    e+++ mf++ve+W+ e + e+++++++Ls+++v++g+nhke
  CCE26644.1 493 AIDNDGTDVNRLCDRIVHgIMHHPAQRNLGQdgasEARNLMFQEVETWWGELRGEQDSYRQKLSRDGVERGENHKE 568
                 ******************9*******9876666669*****************99999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (940 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.48
# Mc/sec: 5838.65
//
Query:       CCE26645.1  [L=668]
Description: uncharacterized protein CPUR_00114 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-09   37.0  11.9    5.8e-09   36.1  11.9    1.5  1  zf-RING_2     Ring finger domain
    4.5e-07   29.6  10.4      1e-06   28.5  10.4    1.6  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    9.9e-06   25.2  11.5    9.9e-06   25.2  11.5    2.0  2  zf-RING_11    RING-like zinc finger
    9.8e-05   22.6  10.7    0.00016   21.9   9.2    2.1  1  zf-rbx1       RING-H2 zinc finger domain
    0.00017   21.4  11.7    0.00034   20.4  11.7    1.5  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    0.00076   19.4   8.4     0.0021   18.0   8.4    1.8  1  zf-RING_UBOX  RING-type zinc-finger
     0.0046   16.9  12.0      0.008   16.1  12.0    1.4  1  zf-RING_5     zinc-RING finger domain
     0.0083   16.2   5.4      0.017   15.1   5.4    1.5  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
  ------ inclusion threshold ------
      0.017   14.7   8.5      0.038   13.6   8.5    1.5  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
      0.072   13.1   1.7       0.17   11.9   1.7    1.6  1  zf-C3H2C3     Zinc-finger
       0.11   12.7   0.0       0.25   11.4   0.0    1.6  1  DUF2730       Protein of unknown function (DUF2730)
       0.32   10.8   0.8        1.1    9.1   0.0    2.1  2  LapA_dom      Lipopolysaccharide assembly protein A domain
        1.6    8.6  12.1        3.5    7.6  12.1    1.5  1  Prok-RING_4   Prokaryotic RING finger family 4
        2.7    7.9  12.9        4.7    7.2  12.9    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
          4    7.7  12.1        7.5    6.8  12.1    1.5  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1  11.9   4.9e-12   5.8e-09       2      44 .]     426     470 ..     425     470 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 4.9e-12
   zf-RING_2   2 eCpICleelssadsvlll.pCgHvfhreClerwlrssst.CPlCr 44 
                 +C ICl +++ + +++++ pCgH+fh eC++++l ++s+ CP+C+
  CCE26645.1 426 NCHICLARFEHRCTIIRElPCGHIFHTECIDEFLIQNSSlCPTCK 470
                 7********8766666445*************87666667****7 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5  10.4   8.5e-10     1e-06       1      40 []     426     469 ..     426     469 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 8.5e-10
  zf-C3HC4_2   1 kCpiCldmlkdpsvvt...pCgHvfCqkCilrsLeekn.eCPlC 40 
                 +C+iCl++++   +++   pCgH f+ +Ci++ L +++  CP+C
  CCE26645.1 426 NCHICLARFEHRCTIIrelPCGHIFHTECIDEFLIQNSsLCPTC 469
                 5**********98888999*************8777776***** PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2  11.5   8.3e-09   9.9e-06       1      29 []     426     455 ..     426     455 .. 0.89
   2 ?   -1.8   0.5       2.3   2.7e+03      14      23 ..     463     472 ..     456     472 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 8.3e-09
  zf-RING_11   1 eCsICLeefk.pgqalfilpCsHtFHfkCI 29 
                 +C ICL  f+ ++  ++ lpC+H+FH +CI
  CCE26645.1 426 NCHICLARFEhRCTIIRELPCGHIFHTECI 455
                 7*********5566669************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.3
  zf-RING_11  14 alfilpCsHt 23 
                 +  ++ C+H+
  CCE26645.1 463 SSLCPTCKHC 472
                 556788***6 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   9.2   1.3e-07   0.00016      10      55 .]     423     470 ..     418     470 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.3e-07
     zf-rbx1  10 leeacieckapgdeecpvvlG.eCgHaFHlhCiskWlkt.rkvCPlcr 55 
                 ++ +c  c a  +++c+++    CgH FH++Ci++ l + ++ CP+c+
  CCE26645.1 423 YQPNCHICLARFEHRCTIIRElPCGHIFHTECIDEFLIQnSSLCPTCK 470
                 55678888888888888887549*************9994667****6 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4  11.7   2.8e-07   0.00034       1      41 []     427     469 ..     427     469 .. 0.96

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.8e-07
                 -TTT-S--SS-E....E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn...elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iCl  ++  +   + l+C+H f+++Ci++ l  +++  CP+C
  CCE26645.1 427 CHICLARFEHRCtiiRELPCGHIFHTECIDEFLI-QNSSLCPTC 469
                 ************99999*****************.88888**** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   8.4   1.8e-06    0.0021       1      36 [.     427     464 ..     427     476 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.8e-06
  zf-RING_UBOX   1 CpIClelftdP...lv.lpCGHtFCreClwelskslegaf 36 
                   C ICl  f++    +  lpCGH+F+ eC+    +  +++ 
    CCE26645.1 427 CHICLARFEHRctiIReLPCGHIFHTECI--DEFLIQNSS 464
                   *********6666445679**********..344444444 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  12.0   6.7e-06     0.008       1      43 [.     426     470 ..     426     471 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.7e-06
   zf-RING_5   1 hCnkCfeklskeek..fyltsCgHifCekClkkll.ekeavCpiCr 43 
                 +C +C  ++ +++   +  ++CgHif+ +C+++ l +++  Cp+C+
  CCE26645.1 426 NCHICLARF-EHRCtiIRELPCGHIFHTECIDEFLiQNSSLCPTCK 470
                 6********.4444567779*************************9 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   5.4   1.4e-05     0.017      25      81 ..     417     473 ..     407     476 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.4e-05
                 TTT-SBTTS--TTCSTT.TTTS-EEEBT.TS-EEEHHHHHHHHHHHSTSSB-TTTSSB- CS
  zf-ANAPC11  25 GicrvsfdGtcpsckfp.GddcplvlGk.ckhnfhlhcilkwletetskglcpmcrqtf 81 
                 G    +++  c  c       c+++    c h+fh+ ci ++l +++s  lcp c+  +
  CCE26645.1 417 GTTATNYQPNCHICLARfEHRCTIIRELpCGHIFHTECIDEFLIQNSS--LCPTCKHCM 473
                 66667888889999765156799999888**************99876..8****9765 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   8.5   3.2e-05     0.038       4      47 ..     424     468 ..     421     476 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.2e-05
  Zn_ribbon_17   4 lksCayCelavkgrvvlcgv..CeHvlHasCarewfenddlaeCps 47 
                   + +C++C  + + r+++  +  C+H+ H++C++e + ++  + Cp+
    CCE26645.1 424 QPNCHICLARFEHRCTIIRElpCGHIFHTECIDEFLIQNS-SLCPT 468
                   568***********99986445***********9987777.89997 PP

>> zf-C3H2C3  Zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.7   0.00015      0.17      17      35 .]     446     470 ..     442     470 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
   zf-C3H2C3  17 CkHlvHakCade......evCPkCk 35 
                 C H++H++C de        CP+Ck
  CCE26645.1 446 CGHIFHTECIDEfliqnsSLCPTCK 470
                 *********99744444468****7 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00021      0.25       6      60 ..     286     341 ..     284     346 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
     DUF2730   6 nwglilavisvvvavi.lllldskYakredleklaekveendkrlteletkvenLP 60 
                  w++il vi+ + +vi ++ l  ++++r + + l++ v++ +  l+++ +k  ++P
  CCE26645.1 286 TWAFILIVIGALLSVIlVVSLTMHFIQRRNRTLLKKRVQSGEVDLEAMGIKRVTVP 341
                 6********98877661578**************9999999999999988766666 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00091       1.1      20      62 ..     285     329 ..     279     331 .. 0.76
   2 ?   -1.0   0.1       1.4   1.6e+03      43      57 ..     487     501 ..     483     505 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00091
    LapA_dom  20 sllllvafgiGallgwllsl..wsylrlrrelrrlkkkikkleke 62 
                 +++ ++ ++iGall ++l +   + + +rr    lkk+++  e +
  CCE26645.1 285 ATWAFILIVIGALLSVILVVslTMHFIQRRNRTLLKKRVQSGEVD 329
                 67888999*****99999995446667777777779988876655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
    LapA_dom  43 lrlrrelrrlkkkik 57 
                 +r  r+lrrl+++++
  CCE26645.1 487 VRRERALRRLRERVD 501
                 688899999999876 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  12.1    0.0029       3.5       1      38 [.     427     471 ..     422     476 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0029
  Prok-RING_4   1 CvlCgeq.ekkaile...pCgHlvCkeCfdsk...dlssCPlCqr 38 
                  C +C  + e+   ++   pCgH++  eC d+    ++s CP C++
   CCE26645.1 427 CHICLARfEHRCTIIrelPCGHIFHTECIDEFliqNSSLCPTCKH 471
                  667766553433332234************987757779****97 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  12.9    0.0039       4.7       4      44 ..     426     470 ..     423     473 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0039
                 B-TTTSSS..BS-EEET..TEEEEEE-HHHHHHHHH.TT-B-TTT- CS
  zf-C3HC4_3   4 eCviCler..prnvvll..pCgHlvlCeeCaekllk.rkkkCpiCr 44 
                  C iCl r   r++++   pCgH+ +  eC +++l  ++  Cp C+
  CCE26645.1 426 NCHICLARfeHRCTIIRelPCGHI-FHTECIDEFLIqNSSLCPTCK 470
                 7******8634555553558****.********98669*******8 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  12.1    0.0062       7.5       1      42 []     427     469 ..     427     472 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0062
  zf-C3HC4_4   1 CPiCldYLekPvsl....eCGhsfClsCisslqkepdgeqllCplC 42 
                 C iCl+ +e+  ++    +CGh+f  +Ci+++  ++++   lCp C
  CCE26645.1 427 CHICLARFEHRCTIirelPCGHIFHTECIDEFLIQNSS---LCPTC 469
                 8899999999887544449****************988...58877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      691  (0.0385409); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4533.26
//
Query:       CCE26646.1  [L=656]
Description: uncharacterized protein CPUR_00115 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4868.02
//
Query:       CCE26647.1  [L=495]
Description: probable peroxisome assembly protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-35  122.5   2.3    2.7e-35  122.0   2.3    1.1  1  Pex2_Pex12    Pex2 / Pex12 amino terminal region
     0.0052   16.9   3.8      0.011   15.8   3.8    1.6  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
  ------ inclusion threshold ------
       0.13   12.3   2.0       0.58   10.2   2.0    2.0  1  zf-RING_UBOX  RING-type zinc-finger
        0.2   11.9   1.5        1.4    9.2   0.2    2.4  2  CnrY          Anti-sigma factor CnrY


Domain annotation for each model (and alignments):
>> Pex2_Pex12  Pex2 / Pex12 amino terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   2.3   5.9e-39   2.7e-35       1     223 [.      82     285 ..      82     287 .. 0.91

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 5.9e-39
  Pex2_Pex12   1 deelesllkpalryilrllagqrfpilnyfdEikllldlllelltlksgngTfgeefygLkrv.ssselkkrrllskrqrllsllllvlipYlkeklde 98 
                 deel +llk+++ ++l+++ag + +  ++ +Ei l+l+++l+ lt++ +++T+g  +++L ++ ++++++  +++s+ q+ ++ l++v++ Y +++++ 
  CCE26647.1  82 DEELVDLLKSQVGEALKYFAGGHLQ-DDWSSEIMLALRAILFKLTVWDHDATYGAALQNLTYTdARHSGPVLKPPSRLQKSMYGLITVFGKYTWTRWED 179
                 89***********************.*************************************666666666*************************** PP

  Pex2_Pex12  99 lysarerysaealsdearnsreslkkrlkrlllklypfiealyellnlvlqllYL.sgkyysllkrllgiryvrlnpadqrrnarrpsyeylnrqllwn 196
                 ++     ++           ++ l +   r l ++ + +++ + +++l+ ++++L +g y +ll+r+l++r++  + + +    r +s+eylnrql+w+
  CCE26647.1 180 WL-----LEH-------DEGHDHLPSPRIRSLSRWTRRLTTMHSAAALASFMAFLwNGHYRTLLDRMLRMRLAAPTSQVS----REVSFEYLNRQLVWH 262
                 **.....222.......22344444566778999999999***********************************99999....*************** PP

  Pex2_Pex12 197 alkellgllllllllsvfllkllewwy 223
                 a++e+l ++l+    ++++ k ++w +
  CCE26647.1 263 AFTEFLLFMLP----LIGINKWRRWLS 285
                 ***********....777777777766 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   3.8   2.5e-06     0.011      13      42 .]     362     391 ..     356     391 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.5e-06
  zf-C3HC4_4  13 sleCGhsfClsCisslqkepdgeqllCplC 42 
                 +++CG+++C  C+      ++ge+++C  C
  CCE26647.1 362 TIPCGCIYCYVCVATRLVREEGEGWTCLRC 391
                 79************9999999******999 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.0   0.00013      0.58       1      36 [.     317     386 ..     317     391 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00013
  zf-RING_UBOX   1 CpIClelft................................dPlv.l.pCGHtFCreCl.welskslegaf 36 
                   C IC+++ +                                +P   + pCG ++C  C+ + l + ++   
    CCE26647.1 317 CAICYQEQNdstgkseaemmmmmaaaasssgvvgsaqtditNP-YeTiPCGCIYCYVCVaTRLVREEGEGW 386
                   6666643333666666666666666666666666666666699.55559**********424455444444 PP

>> CnrY  Anti-sigma factor CnrY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00031       1.4      35      70 ..       9      47 ..       3      67 .. 0.68
   2 ?    0.9   0.1      0.12   5.6e+02      51      85 ..     211     244 ..     191     249 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00031
                XXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXX CS
        CnrY 35 maqivlvarrdaqraivcaalaalv...afvainrvatl 70
                 aq+ ++arr+a+ a + aa++a     a  a +r + l
  CCE26647.1  9 QAQRRVAARRNAREADISAAFSARRgspASSASSRLSRL 47
                699******************996511144444555544 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.12
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CnrY  51 vcaalaalvafvainrvatlmlekaaptwlaspsa 85 
                   aala+ +af   n     +l++   + la+p++
  CCE26647.1 211 SAAALASFMAFLW-NGHYRTLLDRMLRMRLAAPTS 244
                 4578999999988.666666788888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3648.52
//
Query:       CCE26648.1  [L=622]
Description: uncharacterized protein CPUR_00117 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.037   13.6   0.3       0.08   12.5   0.3    1.5  1  Cytochrom_B558a  Cytochrome Cytochrome b558 alpha-subunit


Domain annotation for each model (and alignments):
>> Cytochrom_B558a  Cytochrome Cytochrome b558 alpha-subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   4.4e-06      0.08      64     120 ..     421     476 ..     396     483 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.4e-06
  Cytochrom_B558a  64 mercgqkyltavvkvfgpltrnyyvravlhaalavpagfllatilgtvclaiasliy 120
                       er+g + l+ v k++  lt + yvra l+a l  p  f++  il +  l + + i 
       CCE26648.1 421 GERVGSYPLSWVFKLYFTLTYQTYVRA-LYARLRTPKQFVILQILSSTSLVVLTPIM 476
                      589***********************9.789**************999998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4627.89
//
Query:       CCE26649.1  [L=221]
Description: probable APT1-adenine phosphoribosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-16   60.0   0.0    3.1e-16   59.3   0.0    1.3  1  Pribosyltran  Phosphoribosyl transferase domain
     0.0048   16.4   0.0     0.0069   15.8   0.0    1.2  1  UPRTase       Uracil phosphoribosyltransferase
  ------ inclusion threshold ------
        0.1   12.3   0.1       0.16   11.6   0.1    1.2  1  CmcI          Cephalosporin hydroxylase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   5.1e-20   3.1e-16      13     122 ..      83     198 ..      76     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 5.1e-20
                   EEEEETTEEEEEE.--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE...............EE----TTSEEEEE-SEESSSH CS
  Pribosyltran  13 davarlaaeilee.yngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdes.......rlledpagkkVliVDDildtGg 101
                     va l  +i ++ +n  pdv+vg + +G+ f++ la +L++ +a vrk+ + p++  +a    ++e        +  ++++g+kVliVDDi++tGg
    CCE26649.1  83 TLVAALEMQIAQTfKNDMPDVIVGLDARGFLFGPGLALRLGIGFAAVRKQGKLPGPCVTAE--YIKEYgkdmfqmQQDAIKEGQKVLIVDDIIATGG 177
                   578888888999988899************************************9998885..34555799************************** PP

                   HHHHHHHHHHCC-BSEEEEEE CS
  Pribosyltran 102 TllaalelLkekgpeevriav 122
                   + +aa++l++  + ++++ + 
    CCE26649.1 178 SAKAAADLVAQLKGQVMGYMF 198
                   **********99999888665 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.2e-06    0.0069     119     151 ..     160     193 ..     141     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-06
     UPRTase 119 i.aertvlllDpviaTGgsaaaaiqlLkergvge 151
                 i + ++vl++D +iaTGgsa aa +l+ +   ++
  CCE26649.1 160 IkEGQKVLIVDDIIATGGSAKAAADLVAQLKGQV 193
                 356678*****************99998876655 PP

>> CmcI  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.7e-05      0.16      14      63 ..     145     193 ..     141     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.7e-05
        CmcI  14 iiklpqDlvayQ.eliwelkPdliietGiahGGsalfsasllallkskrkv 63 
                 i ++ +D++++Q   i e +  li++  ia GGsa   a+l+a+lk  ++v
  CCE26649.1 145 IKEYGKDMFQMQqDAIKEGQKVLIVDDIIATGGSAKAAADLVAQLK--GQV 193
                 557889****972599999*************************94..444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1705.65
//
Query:       CCE26650.1  [L=125]
Description: uncharacterized protein CPUR_00119 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        3.1    8.2  16.9    8.5e+02    0.3  16.9    2.4  1  DUF3566   Transmembrane domain of unknown function (DUF3566)


Domain annotation for each model (and alignments):
>> DUF3566  Transmembrane domain of unknown function (DUF3566)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3  16.9     0.048   8.5e+02      28      91 ..      35      96 ..       2     115 .. 0.49

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.048
     DUF3566 28 fivlvvavavlylvldalgvfdkvnslvkdlvgeessldleevlslgrvlslaalvgvvnvvll 91
                 i +v+ +  +  +  ++ + ++v s +k++ + ++ +++++v+s+++v+s+ +++++  v+ +
  CCE26650.1 35 SIKTVISIKTVISIKTVISI-KTVIS-IKTVISIKTVISIKTVISIKTVISIKTVISIKTVISI 96
                33333333322222111111.11111.1122222223333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                       69  (0.00384851); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 966.08
//
Query:       CCE26651.1  [L=1142]
Description: probable glycosyl hydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.6e-111  373.5   0.0   2.2e-111  373.0   0.0    1.2  1  Glyco_hydro_47  Glycosyl hydrolase family 47
  ------ inclusion threshold ------
       0.14   10.5   0.5       0.26    9.5   0.5    1.4  1  CDC45           CDC45-like protein
        1.3    8.8  10.3        2.4    8.0  10.3    1.3  1  Sigma70_ner     Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.0   0.0  3.6e-115  2.2e-111       1     457 [.      35     587 ..      35     588 .. 0.92

  Alignments for each domain:
  == domain 1  score: 373.0 bits;  conditional E-value: 3.6e-115
                     HHHHHHHHHHHHCTTSSEEETTTTEE.............E-SS.SS-CCHHHHHHHHHHC............CHHHHHHHHHHHHHHC--..... CS
  Glyco_hydro_47   1 afkhswegYkkyAwghDelrPlskkg.............rdtfgglgatlvDsLdtllim............glkeefeeaveavekkid..... 65 
                     +f+h++++Y+k+A+++DelrPl++++             +d++g++++tl+DsL+tl+i+            ++ ++f++ v ++  ++      
      CCE26651.1  35 MFYHGFSNYMKHAFPEDELRPLTCSPltrdrndpsrielNDALGNYSLTLIDSLSTLAILaggpqdgsytgpQALSDFQDGVAQFVAHYGdgrpg 129
                     79****************************************************************99999988888888887777677568899 PP

                     ..........--S.SS.EEEHHHHHHHHHHHHHHHHHHH.........................................S-HHHHHHHHHHHHH CS
  Glyco_hydro_47  66 ..........fdtsdskevsvFEttIRyLGGLlsaydls........................................ekkedvllekAvelad 110
                               fd  ds +v+vFEt+IR LGGLlsa+ ++                                         +++ +ll+ A +la+
      CCE26651.1 130 rsgmgsrargFD-LDS-KVQVFETVIRGLGGLLSAHLFAvgelpisgydpkpmprdnddkgdydeddplqlapiawpngLRYDGQLLRLALDLAE 222
                     999999999999.688.89***********************************************************999************** PP

                     HHHGGGSSTTS---SEEETTT--EE-.STCGC......................EEEHHHHCSSHHHHHHHHHHHT-CHHHHHHHCCHHHHHCHC CS
  Glyco_hydro_47 111 rLlpAFdtpsglpvarvnlkkrkaskkerass......................esvlAelgslslEftrLsqlTgdkkYedlaervtkaleelq 183
                     rLlpAF+t++g+p++rvnl+++     ++                         e+++A +gsl+lEft+Ls+lTgd+++e++a+r+++++++  
      CCE26651.1 223 RLLPAFYTKTGIPYPRVNLRTGIPFYVNS--PlhwstdgqngqtrldgdrleitETCSAGAGSLTLEFTVLSRLTGDSRFEHAAKRAFWEVWS-- 313
                     *******************7665544433..23366679999**********988899***********************************.. PP

                     C.HHHTTB-BSEEETTT--EESTEE-SSTTTHHHHHHHHHHHHHCTS--...............................HHHHHHHHHHHHHHH CS
  Glyco_hydro_47 184 ektklpglvpikidastgkfvaekislgargDSyYEYllKqylllggee...............................eqyrkmyeealdaik 247
                     +  +  gl+++ ida++g + + + ++ga+ DS++EY++K+++ll+g++                               +++ + ++ea++++k
      CCE26651.1 314 R-RSEIGLIGNGIDAEQGLWIGPHSGIGAGMDSFFEYAFKSHILLSGHDmpnvtspttatktrldpnalhgplpremhlsDTFLQAWREAHASVK 407
                     3.3489****************************************9999********************************************* PP

                     HH.TEEE-TTT..--EEE-EECTTCTS.EE-EEEGGGGHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS.....S- CS
  Glyco_hydro_47 248 khllfrpskkkeddllfvgevtsteegklspeidhLscFlgGllalgakllekeedlelAkkltegcvkayeatktglmPEifevkpcesaeece 342
                     +h+++++s+       + ++ ++ +++ ++ +id+L +F++Gllal+       +++e A +    ++++++++  + +PE++++ +        
      CCE26651.1 408 SHIYTNRSHYP-----YYSNSHRATGQPYTMWIDSLGAFYPGLLALA-------GEVEEAIEANLVYTALWTRY--SALPERWSIRE-------- 480
                     **777744433.....444444556789*******************.......99****************99..9********93........ PP

                     ECTSSSSEEE-.GGG--B----HHHHHHHHHHHHH--THHHHHHHHHHHHHHHHCEETTEE--ECETTSSS-EE-S-B-HHHHHTHHHHHHHHC- CS
  Glyco_hydro_47 343 wneekkdealkriedrkyllRPEaiESlfylYritgdekyrevgwemfealekatktesgysaledVtkeepekeDemeSFwlaEtlKYlYLlFs 437
                            + ++ +   + + RPE+iES++ +Yr+t+d++y++vg+++++++++++ +++g+++l+dV+  ++ek+++meSF+l+Et KY+YLlF+
      CCE26651.1 481 -------NNVE-PGIGWWPGRPEFIESTYHIYRATQDPWYLHVGEMVLRDIRRRCYASCGWAGLQDVR--TGEKQNRMESFFLGETAKYMYLLFD 565
                     .......2233.4566****************************************************..9************************ PP

                     S-TTT-..TTTEEE-TTS-EEE CS
  Glyco_hydro_47 438 dedvls..ldeyVfnTeAHplk 457
                     +++ l+     yVf+Te+Hpl 
      CCE26651.1 566 PDHALNklDAAYVFTTEGHPLI 587
                     *****997789*********96 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.5   4.4e-05      0.26     131     163 ..    1038    1069 ..     977    1097 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 4.4e-05
       CDC45  131 esdeedeeeeeeddddeeeeeeeeedeedeeed 163 
                  ++d++++++eee+++d++++++ + d+++  +d
  CCE26651.1 1038 DEDQDQHDDEEEEEEDDDDDDDIDGDDDHG-AD 1069
                  333222212211111111111111111111.11 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  10.3    0.0004       2.4      26      75 ..    1035    1085 ..    1026    1091 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0004
  Sigma70_ner   26 idGflDeeeeeeeeeeeedeeeeeee...edddeeeseseaadeeelkeeale 75  
                   i   +De++++ ++eeee+e++++++    ddd+++++s++a  e+l+   le
   CCE26651.1 1035 IV--VDEDQDQHDDEEEEEEDDDDDDdidGDDDHGADSSASAHAEPLPRPLLE 1085
                   33..5544344333333333333333354444478999999999999987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.27s 00:00:01.21 Elapsed: 00:00:00.43
# Mc/sec: 7888.05
//
Query:       CCE26652.1  [L=328]
Description: uncharacterized protein CPUR_00121 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2618.85
//
Query:       CCE26653.1  [L=46]
Description: uncharacterized protein CPUR_00122 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       140  (0.00780858); expected 358.6 (0.02)
Passed bias filter:                      123  (0.00686039); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 379.09
//
Query:       CCE26654.1  [L=742]
Description: related to zinc finger transcription factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-06   26.8  10.3      4e-06   26.8  10.3    1.7  2  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
    8.2e-06   25.0   0.1    1.5e-05   24.2   0.1    1.4  1  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
       0.31   11.4   1.5       0.61   10.5   1.5    1.4  1  SLX9          Ribosome biogenesis protein SLX9


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8  10.3   6.7e-10     4e-06       1      35 [.      70     106 ..      70     111 .. 0.85
   2 ?   -3.8   0.2       2.4   1.5e+04       9      14 ..     608     613 ..     607     614 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 6.7e-10
                 SS-HHHHHCT---ST.SSSS..-HHHHHCTHHHCCCCT CS
     Zn_clus   1 haCdnCrkkKvKCda.kkPa..CsnCkklnleCtfyse 35 
                 +aC++Cr++K +Cd  + P   Cs+C +l l+C+ ++ 
  CCE26654.1  70 RACNECRQQKLRCDVvQEPFqsCSRCNRLKLDCK-IES 106
                 69*************8777688***********9.443 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.4
                 CT---S CS
     Zn_clus   9 kKvKCd 14 
                  Kv+C 
  CCE26654.1 608 LKVRCR 613
                 699995 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   2.5e-09   1.5e-05       3     132 ..     210     324 ..     208     350 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.5e-09
  Fungal_trans   3 rffsnfhpqfpilhkpsflpktssenssksayaspllllailalGal.fsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                    ff ++hp +p+l+ ++  +++        ++++pll+++i+a++a+ fs+++ +e  ++l+  +        r+  ++    ++ps+  +++++  
    CCE26654.1 210 EFFAYYHPFLPFLNPQQPPEQY--------NQQHPLLFWSIIAVAARrFSPMDCRELLTNLSGPM-------TRFLWTT--IGEVPSN-YHVVKAMC 288
                   69************98888888........999*************6377777777777777766.......3666556..5667777.9******* PP

  Fungal_trans  99 llelyektssdralher..hhgvavrlarslgLhrn 132
                   ll+++ + +s++++     ++gv+++ a+ +gLhr 
    CCE26654.1 289 LLCTWPLPTSTTTSDPThiLCGVMMKTATGIGLHRP 324
                   ***********999999999**************85 PP

>> SLX9  Ribosome biogenesis protein SLX9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.5    0.0001      0.61      26     113 ..      18     143 ..       9     165 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
        SLX9  26 sksaskkkkkrkrrpskklvtdlesLadaLpdle...eeege.kkekkekeqaqqgkvkkae.......................k..slkskpgalkr 95 
                 s  +s++ +  ++r++ + vt  +s a+aL++      ++g+ +k++++  ++  ++ ++++                       k  s+ ++ g+  +
  CCE26654.1  18 SPASSRQGNGGQKRKRSSAVTHESSPASALDEDHgdhGDHGDhDKKRQPGVKRACNECRQQKlrcdvvqepfqscsrcnrlkldcKieSNFKRVGKRSK 116
                 5667777777778888***************77677633344466666666777777777669******************9999456********999 PP

        SLX9  96 kkklekkEmerfkkvLa..........h 113
                 +  + +kE++  ++++a          +
  CCE26654.1 117 HAEM-EKEIDHLRRNIArakaqgfmpdE 143
                 9999.************66666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4878.29
//
Query:       CCE26655.1  [L=71]
Description: uncharacterized protein CPUR_00124 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 541.68
//
Query:       CCE26656.1  [L=476]
Description: related to aldehyde dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.9e-138  460.5   1.7   5.9e-138  460.2   1.7    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.2   1.7  3.3e-142  5.9e-138       7     462 .]      20     472 ..      14     472 .. 0.97

  Alignments for each domain:
  == domain 1  score: 460.2 bits;  conditional E-value: 3.3e-142
                 SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   7 etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelae 105
                 ++++  +Patg+v+ k + a+ +d+ +av+aA+ea  +w++++++eR++i+ kaad++ +r+eela++++ etG     a+ +++++i +l+ + + + 
  CCE26656.1  20 KSFDIKSPATGKVLHKSAGASVDDAAKAVDAAAEALTSWRRTTPQERQDIILKAADIMSRRREELATFMVDETGCASDWADFNLDNSIAMLKDVGGRVP 118
                 45999********************************************************************************************** PP

                 HHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE-...-SSTCCHHHHH CS
      Aldedh 106 klegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvv...tgsgsevgeal 200
                 +l+g+  ++ ++++ a+v reP+Gvv++I++WN P +l ++++a  +aaGNtvvlK +e  p + ++l+ ++++aglPkgv+n++   + + + v + l
  CCE26656.1 119 TLAGSFPAMaNPNRSAIVLREPYGVVLSIAAWNAPYMLGTRAVAFPIAAGNTVVLKASESCPRTFWALVDVLRDAGLPKGVVNLLvhePSDAAAVTSSL 217
                 ****9988877**************************************************************************776677889999** PP

                 HH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS CS
      Aldedh 201 vehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvg 299
                 +++p+v+k++ftGs +vgr iak+aa++lk+v+lElGGk+p+iv+edaDld a+++++ g+f++ GQ+C++++++lv++ i d f++kl++a++++   
  CCE26656.1 218 ITDPRVKKINFTGSAAVGRIIAKQAAEHLKPVVLELGGKAPAIVWEDADLDLAAQQCALGSFIHGGQICMCTEKILVHKAIKDTFRQKLAAAVAAMFP- 315
                 *********************************************************************************************99855. PP

                 -TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESE CS
      Aldedh 300 dpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLa 398
                    d +  v  li++a+++k +++v +a+e+ga++l+G    +a++++   ++P v++nvt dm+i+++E FGP +sv+ +++eeeai+iaNdteyGLa
  CCE26656.1 316 --SDGEAIV--LINSAAAHKNKQLVTDATERGATILHGD--VTAHESSATRMRPIVVDNVTADMDIYKTESFGPTVSVLDIESEEEAIRIANDTEYGLA 408
                 ..5556777..9*************************99..67899999************************************************** PP

                 EEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 399 agvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 a+vft+dl+r +r+ae++e+G v+iN++t+++++alp+gG k Sg+Gr++ + glee+t++k+v
  CCE26656.1 409 AAVFTQDLRRGLRLAEAIETGAVHINSMTVHDESALPHGGAKSSGYGRFNASLGLEEWTRTKNV 472
                 **************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3582.68
//
Query:       CCE26657.1  [L=204]
Description: probable mitochondrial import inner membrane translocase subunit TIM10 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-19   67.2   4.5    1.1e-18   66.6   4.5    1.3  1  zf-Tim10_DDP  Tim10/DDP family zinc finger


Domain annotation for each model (and alignments):
>> zf-Tim10_DDP  Tim10/DDP family zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   4.5   6.3e-23   1.1e-18       5      64 .]     126     186 ..     122     186 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 6.3e-23
  zf-Tim10_DDP   5 qeqqvanaqelvnkltekCfkkCi.gkypgssLdsseesCldnCvdryldvsnlvskrlqe 64 
                    e +++++ +++n+l ++C kkCi ++y++++L+++e++Cld+C++++ld+s++vs+ +q+
    CCE26657.1 126 VEGEMRMMADTYNRLQKTCQKKCIsTDYREAELNKGESVCLDRCTAKFLDTSMKVSEIMQQ 186
                   5789********************777******************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1642.22
//
Query:       CCE26658.1  [L=911]
Description: related to SIN3 protein-binding protein STB2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.058   13.6   1.4       0.12   12.5   1.4    1.5  1  K-box     K-box region
      0.072   13.4   1.2       0.13   12.5   1.2    1.4  1  THOC7     Tho complex subunit 7
       0.63    9.4   3.4        1.1    8.7   3.4    1.3  1  HMMR_N    Hyaluronan mediated motility receptor N-terminal


Domain annotation for each model (and alignments):
>> K-box  K-box region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.4   2.1e-05      0.12      43      83 ..     800     840 ..     795     850 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
       K-box  43 keLqqLEqqLekslkkiRsrKeqllleeieelkkkekqlee 83 
                  eLq+L q+L+++ ++ R + ++ll+e+ e l +  k++e 
  CCE26658.1 800 TELQNLHQRLDEACQRARYKSDELLSEQRESLTESVKEIEV 840
                 69*******************************99998875 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.2   2.2e-05      0.13       7     100 ..     789     886 ..     783     888 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
       THOC7   7 RLlnv....eerplkrltkrllklltslaesteeeleqlkedllldfaafelsierlqllakanerereryeaekeeieseieavreeieelkaqLee 100
                  Lln+    ++ +l++l +rl++ +++   +++e l + +e+l+  + + e  ++rl+  ++   +++  +e+  +  es+ e+v+   +elk++Le 
  CCE26658.1 789 ELLNDgygrDKTELQNLHQRLDEACQRARYKSDELLSEQRESLTESVKEIEVLVARLDYEMHGLIQKVGDVEEGIRGFESQVEDVECRAAELKVTLET 886
                 689999999999***************99999***************************************************************996 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.4   0.00019       1.1     225     313 ..     798     887 ..     782     888 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00019
      HMMR_N 225 eteklleyieelsnvseqlekykld..iaqleellkekndeiesLkssLeekeqelskqvkdlnekckllekekeelvreeeekeqtlsaE 313
                 +  +l +  ++l ++ +++ +yk d  + + +e l e  +eie L   L+ + + l ++v d +e ++  e++ e++  ++ e + tl++E
  CCE26658.1 798 DKTELQNLHQRLDEACQRA-RYKSDelLSEQRESLTESVKEIEVLVARLDYEMHGLIQKVGDVEEGIRGFESQVEDVECRAAELKVTLETE 887
                 5667888888999888887.8887755678889999999***********99999*******************99999998888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 6724.54
//
Query:       CCE26659.1  [L=474]
Description: uncharacterized protein CPUR_00128 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-33  114.4   0.0    6.3e-33  113.8   0.0    1.3  1  CLTH            CTLH/CRA C-terminal to LisH motif domain
      1e-06   28.6   4.0      2e-06   27.7   4.0    1.5  1  zf-RING_UBOX    RING-type zinc-finger
    0.00071   19.5   4.7     0.0012   18.8   4.7    1.4  1  zf-RING_5       zinc-RING finger domain
     0.0017   18.2  12.8     0.0026   17.5  12.8    1.2  1  Cwf_Cwc_15      Cwf15/Cwc15 cell cycle control protein
     0.0027   17.1   0.1     0.0027   17.1   0.1    1.8  2  Rtf2            Rtf2 RING-finger
      0.003   17.4   4.9     0.0052   16.6   4.9    1.3  1  zf-C3HC4_3      Zinc finger, C3HC4 type (RING finger)
     0.0062   15.9   7.3     0.0087   15.5   7.3    1.2  1  BUD22           BUD22
     0.0064   16.3   6.4      0.012   15.4   6.4    1.5  1  zf-C3HC4        Zinc finger, C3HC4 type (RING finger)
     0.0069   16.7   5.1      0.012   15.9   5.1    1.4  1  zf-RING_2       Ring finger domain
  ------ inclusion threshold ------
      0.016   15.0   0.3      0.083   12.8   0.1    2.2  2  Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain o
      0.018   14.9   4.3      0.033   14.1   4.3    1.4  1  Prok-RING_4     Prokaryotic RING finger family 4
      0.039   12.6   0.6       0.25   10.0   0.2    2.0  2  Pellino         Pellino
      0.073   13.3   5.8       0.15   12.3   5.8    1.6  1  zf-C3HC4_4      zinc finger of C3HC4-type, RING
       0.12   10.4  16.6       0.18    9.9  16.6    1.2  1  DNA_pol_phi     DNA polymerase phi
       0.19   11.7  14.4       0.28   11.1  14.4    1.2  1  TFIIA           Transcription factor IIA, alpha/beta subunit
        0.2   10.8  16.4       0.29   10.2  16.4    1.2  1  DUF2457         Protein of unknown function (DUF2457)
       0.42   10.5   6.3        0.8    9.6   6.3    1.5  1  zf-C3HC4_2      Zinc finger, C3HC4 type (RING finger)
       0.84    7.8  11.6        1.2    7.3  11.6    1.2  1  Nop14           Nop14-like family
        1.3    8.9   9.6        1.3    8.8   7.7    2.0  2  Sigma70_ner     Sigma-70, non-essential region
        3.4    5.9   8.8        4.3    5.5   8.8    1.2  1  CDC45           CDC45-like protein
          5    6.4  14.6        8.2    5.7  14.6    1.3  1  SDA1            SDA1
        7.1    6.1  11.6         11    5.5  11.6    1.3  1  PPP4R2          PPP4R2


Domain annotation for each model (and alignments):
>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   7.7e-36   6.3e-33       1     147 [.     227     380 ..     227     381 .. 0.94

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 7.7e-36
        CLTH   1 sikerqkIiklilegdlseaiewinenkpellesnsnLeFkLkllqfielirg..........ktkdieealeyarenlefendehlkelekamsLLaf 89 
                 ++ e+++I  +++e++l +aiew+  n++el  + snLeF+L  lqf++l++g          + +  + al yar n+++++  h +e++++  ++++
  CCE26659.1 227 KFSEMYHILAQLQEHNLVPAIEWARSNNHELQAKGSNLEFELCKLQFVWLFKGptinglpddeN-NGQLGALTYARHNFSRFQARHVQEIQQLSCAMVY 324
                 699**************************************************99988888744.779***********766666************** PP

        CLTH  90 sdpeskelssplknlldp.srrekvakefnsailkllglskespLeillsaglsalktl 147
                  ++ +   +sp++++++  s +++v++ f++++++llgls espL ++++ag++al++l
  CCE26659.1 325 ASNLD---DSPYRHIFQIaSAFDEVSTSFTRDFCSLLGLSAESPLYVAVTAGAIALPRL 380
                 **666...99**********************************************997 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   4.0   2.5e-09     2e-06       1      39 []     418     458 ..     418     458 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 2.5e-09
  zf-RING_UBOX   1 CpIClelft..dP.lvlpCGHtFCreClwelskslegafkCP 39 
                   Cp+++e+ t  +P ++lpCGH++C e l  +   ++ ++kCP
    CCE26659.1 418 CPVSKEQTTeqNPpMMLPCGHVLCCESL-HNIAAKGARYKCP 458
                   ******99999777888***********.899999******9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   4.7   1.5e-06    0.0012       2      42 ..     418     460 ..     417     462 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.5e-06
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll..ekeavCpiC 42 
                 C++  e+++++ ++++++CgH++C + l++    +++++Cp C
  CCE26659.1 418 CPVSKEQTTEQNPPMMLPCGHVLCCESLHNIAakGARYKCPYC 460
                 8888888999999************9999999999******** PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5  12.8   3.2e-06    0.0026      91     146 ..     138     204 ..      68     209 .. 0.50

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.2e-06
                 -------------..----.............------------------------------------- CS
  Cwf_Cwc_15  91 eeeeeeakrrkee..llee...........areidaddedseeeeeeeeeesdddsdsdsdddddedet 146
                 +ee+e+++r+k                   + e+d+ ded+ +++++ ++ + d +d+d+ddddd+de+
  CCE26659.1 138 REEQEQRERKKMPapS--AshrpsrtdgdgDDEMDRYDEDEGDDDNKANNGDADADDDDDDDDDDDDED 204
                 2222222222221121..122233222222234444444444433333344444555555555555554 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.4       1.7   1.4e+03     183     206 ..     138     161 ..     119     212 .. 0.38
   2 !   17.1   0.1   3.3e-06    0.0027     114     168 ..     415     472 ..     386     474 .] 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.7
        Rtf2 183 eeekakkkkkkkakkkkkakakgs 206
                  ee+++++ kk    + +++ + +
  CCE26659.1 138 REEQEQRERKKMPAPSASHRPSRT 161
                 222222222222111111111111 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3.3e-06
        Rtf2 114 pfiCpltglemngktkfvalrkCGcVfsekalkevk....sevClvCgkeykeedvipl 168
                  f+Cp+++ +   ++   ++ +CG+V+  + l +++      +C+ C +e +  d+i +
  CCE26659.1 415 IFVCPVSKEQTTEQNPP-MMLPCGHVLCCESLHNIAakgaRYKCPYCPTEGHLRDAIKI 472
                 69******999888876.5679*************75566667*****99999999877 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   4.9   6.4e-06    0.0052      13      45 ..     429     462 ..     416     465 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.4e-06
                 S-EEETTEEEEEE-HHHHHHHHH..TT-B-TTT-- CS
  zf-C3HC4_3  13 rnvvllpCgHlvlCeeCaekllk..rkkkCpiCrr 45 
                    ++lpCgH+ +Ce+ + ++ +   + kCp+C +
  CCE26659.1 429 NPPMMLPCGHVLCCES-LHNIAAkgARYKCPYCPT 462
                 336899*****55555.66665569********66 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   7.3   1.1e-05    0.0087     123     205 ..     124     217 ..      36     263 .. 0.44

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
       BUD22 123 vveeivesvkkllgiekkkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsed...eekeeseddeeeeeededdedaee.........d 205
                  + e + sv   l  e+ ++++e++k  + +++++ ++++ +  +e d  +e+e+++d   ++ ++++dd++++++d+ddeda++          
  CCE26659.1 124 LLREGEFSVAATLMREE-QEQRERKKMPAPSASHRPSRTDGDGDDEMDRYDEDEGDDDnkaNNGDADADDDDDDDDDDDDEDAGAavnqpdqyfG 217
                 33333333322222222.11111111111111111111111111222222222222221122222222222222222222222223333333221 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   6.4   1.5e-05     0.012       1      41 []     418     460 ..     418     460 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-05
                 -TTT-S--SS-E...E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvkCPlC 41 
                 Cp+ +e  +e+n  ++l+C+H +C++ + +i  +   +kCP C
  CCE26659.1 418 CPVSKEQTTEQNppMMLPCGHVLCCESLHNIAAKGARYKCPYC 460
                 555555556666778******************888899***9 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   5.1   1.5e-05     0.012       3      43 ..     418     460 ..     416     461 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-05
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerwlrssst..CPlC 43 
                 Cp+  e+ ++++ ++ lpCgHv ++e l ++ ++  +  CP+C
  CCE26659.1 418 CPVSKEQTTEQNPPMMLPCGHVLCCESLHNIAAKGARykCPYC 460
                 66766677666667778***********99877777788**** PP

>> Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1    0.0001     0.083      12      36 ..      60      84 ..      60      85 .. 0.95
   2 ?   -1.2   0.0       2.4     2e+03      16      28 ..     307     319 ..     303     329 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.0001
                    HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Matrilin_ccoil 12 alvkFQtkVeseiqaLtqkLeavtk 36
                    a+ ++Q+ V+ +++aLt +L++vtk
      CCE26659.1 60 AMTTLQNPVKGRLEALTNNLKNVTK 84
                    68899*******************8 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.4
                     HHHHHHHHHHHHH CS
  Matrilin_ccoil  16 FQtkVeseiqaLt 28 
                     FQ    +eiq+L+
      CCE26659.1 307 FQARHVQEIQQLS 319
                     89888999***98 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   4.3     4e-05     0.033       6      39 ..     426     463 ..     418     470 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4e-05
  Prok-RING_4   6 eqekkailepCgHlvCkeCfdskdls....sCPlCqrr 39 
                  ++++ +++ pCgH++C e + +   +     CP C ++
   CCE26659.1 426 TEQNPPMMLPCGHVLCCESLHNIAAKgaryKCPYCPTE 463
                  55778899********999999977777899****876 PP

>> Pellino  Pellino
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.23   1.9e+02     124     154 ..     301     331 ..     286     346 .. 0.84
   2 ?   10.0   0.2    0.0003      0.25     291     334 ..     422     465 ..     388     472 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.23
     Pellino 124 qstisrfacrilvdreepktariyaaGfdss 154
                 +   srf  r + + ++ + a +ya+ +d s
  CCE26659.1 301 RHNFSRFQARHVQEIQQLSCAMVYASNLDDS 331
                 5678**********************99987 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0003
     Pellino 291 keseeekqPyvylkcGhvhGrheWgqkeekeeerecplclevgk 334
                 ke+++e++P + l cGhv    + ++   k+++ +cp c + g+
  CCE26659.1 422 KEQTTEQNPPMMLPCGHVLCCESLHNIAAKGARYKCPYCPTEGH 465
                 3455789999*****************************88775 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   5.8   0.00018      0.15      10      42 .]     430     460 ..     418     460 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00018
  zf-C3HC4_4  10 kPvsleCGhsfClsCisslqkepdgeqllCplC 42 
                  P+ l+CGh+ C + + ++  +   + + Cp C
  CCE26659.1 430 PPMMLPCGHVLCCESLHNIAAKG--ARYKCPYC 460
                 49**********99999888776..559****9 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  16.6   0.00021      0.18     641     685 ..     163     211 ..     134     250 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00021
  DNA_pol_phi 641 ededeeddeeeeeeddeededse....edddeeesdedeededdedvde 685
                   d d+e+d  +e+e d++++ ++     ddd++++d+d++++  ++v++
   CCE26659.1 163 GDGDDEMDRYDEDEGDDDNKANNgdadADDDDDDDDDDDDEDAGAAVNQ 211
                  3333333333333333333333311213333333333333333344444 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  14.4   0.00034      0.28     275     366 ..     117     204 ..      43     211 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
       TFIIA 275 sreeidrire..............ealkakelekeskkkkraee.ssladlseilqlDGagddsdeeeeeeesdedsdsessddedeqveEDplNSdDD 358
                 +r       +                l ++e+e+++     +++  + ++ ++  + DG gdd+ +        +d+d+ ++d+++++ + D+   dDD
  CCE26659.1 117 NR-------AitmhllregefsvaATLMREEQEQRE-----RKKmPAPSASHRPSRTDGDGDDEMD-------RYDEDEGDDDNKANNGDADADDDDDD 196
                 22.......022333333555443111212111111.....22223334678899********999.......34444333333333333333222333 PP

       TFIIA 359 vddedddd 366
                  dd+dd+d
  CCE26659.1 197 DDDDDDED 204
                 33333332 PP

>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  16.4   0.00036      0.29      57     112 ..     148     218 ..     101     258 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00036
     DUF2457  57 e.............eddeedeeddddddddeddded...ddeedededddstvedlseeasdGyetDnEaGF 112
                 +             + d +de d+ d+d+ +dd++    d + d+d+ddd +  d +++    ++ D+  G 
  CCE26659.1 148 KmpapsashrpsrtDGDGDDEMDRYDEDEGDDDNKAnngDADADDDDDDD-DDDDDEDAGAAVNQPDQYFGG 218
                 34556666666666333333333222222222221111111111111111.111122233334444554444 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   6.3   0.00098       0.8      10      40 .]     428     460 ..     417     460 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00098
  zf-C3HC4_2  10 kdpsvvtpCgHvfCqkCilrsLeekn..eCPlC 40 
                 ++p ++ pCgHv C + ++    ++   +CP C
  CCE26659.1 428 QNPPMMLPCGHVLCCESLHNIAAKGAryKCPYC 460
                 6888****************55555458****9 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  11.6    0.0015       1.2     329     393 ..     142     205 ..     103     264 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0015
       Nop14 329 eeeeefglgkglkataeeeeeededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeede 393
                 e++e+ ++ +  ++++++  + d dd+++  d++e +++++ ++ + d ++++d++++++ +ed 
  CCE26659.1 142 EQRERKKMPAPSASHRPSRTDGDGDDEMDRYDEDEGDDDNKANNGDADADDDDDDDDDDD-DEDA 205
                 222222222222111212222333333222222222222222222222222222222211.1111 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.2   1.8e+03      69      96 ..      64      91 ..      43     102 .. 0.73
   2 ?    8.8   7.7    0.0016       1.3      32      92 ..     175     236 ..     124     268 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.2
  Sigma70_ner 69 lkeealekfeelreqyeklrkalkkkgr 96
                 l++ ++ ++e+l +++++++ka k+ g+
   CCE26659.1 64 LQNPVKGRLEALTNNLKNVTKAQKNFGK 91
                 5566777888888888888887666555 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0016
  Sigma70_ner  32 eeeeeeeeeeeedeeeeeee.edddeeeseseaadeeelkeealekfeelreqyeklrkalk 92 
                  +e ++++++++ d+++++++ +ddd++++++ aa +++++     + e+l++++ ++ ++l+
   CCE26659.1 175 DEGDDDNKANNGDADADDDDdDDDDDDDEDAGAAVNQPDQYFGGLRSEDLQDKFSEMYHILA 236
                  34455555555555555555344446777888888888887777777777777777776554 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.8    0.0053       4.3     112     185 ..     132     203 ..      77     259 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0053
       CDC45 112 ieeeleeereayealeeeeesdeede..eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesdddd 185
                 ++++l +e+++  + ++++  + +++  +++ + dd+ ++ +e+e d++++ ++++     + +++d+++++ddd+
  CCE26659.1 132 VAATLMREEQEQRERKKMPAPSASHRpsRTDGDGDDEMDRYDEDEGDDDNKANNGDA----DADDDDDDDDDDDDE 203
                 456666666666666777766633333322222222222222222222222222221....111111111111111 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  14.6      0.01       8.2      78     147 ..     138     205 ..     129     258 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.01
        SDA1  78 kwkeeekkekre..........eeeedsddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeee 147
                 ++++e++++k++          +        d + d+e++  d++e d++++  + +     ++ +d+++d++++++e++
  CCE26659.1 138 REEQEQRERKKMpapsashrpsR-------TDGDGDDEMDRYDEDEGDDDNKANNGD-----ADADDDDDDDDDDDDEDA 205
                 44566666666566644332221.......233333333332222222222211111.....222221222222222222 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  11.6     0.014        11     215     284 ..     138     203 ..      98     207 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.014
      PPP4R2 215 fedeeekeeddneseesaseseeiteekdesvkveekdddeeddeedtdyveeeeddesedddeeeeeee 284
                  e++e+ e   +++++ +++ +   +  d +++++    de++ ++d+ +++ ++d+++ ddd++++++e
  CCE26659.1 138 REEQEQRER--KKMPAPSASHRPSRTDGDGDDEMDRY--DEDEGDDDNKANNGDADADDDDDDDDDDDDE 203
                 233333333..33555555555555555555555554..3344444444334333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                       125  (0.00697194); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 3207.00
//
Query:       CCE26660.1  [L=332]
Description: uncharacterized protein CPUR_00129 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.34   10.9   0.2       0.34   10.9   0.2    3.6  3  PsbI      Photosystem II reaction centre I protein (PSII 4.8 


Domain annotation for each model (and alignments):
>> PsbI  Photosystem II reaction centre I protein (PSII 4.8 kDa protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   1.9e-05      0.34       9      24 ..      39      54 ..      37      56 .. 0.88
   2 ?   -5.2   5.1         1   1.8e+04       7      24 ..     170     187 ..     166     188 .. 0.83
   3 ?   -2.3   0.8      0.25   4.5e+03       8      18 ..     232     242 ..     231     247 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.9e-05
        PsbI  9 yivViffvslFvFGfL 24
                y ++  f  lF+FGfL
  CCE26660.1 39 YKTIPTFLTLFIFGFL 54
                667889*********9 PP

  == domain 2  score: -5.2 bits;  conditional E-value: 1
        PsbI   7 vVyivViffvslFvFGfL 24 
                  Vyi  + f   F+ Gf+
  CCE26660.1 170 QVYIALLKFDFFFFLGFI 187
                 699999999999999997 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.25
        PsbI   8 VyivViffvsl 18 
                 V +v++f  +l
  CCE26660.1 232 VSTVILFLGGL 242
                 67777776443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1174  (0.0654805); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2462.13
//
Query:       CCE26661.1  [L=597]
Description: related to amidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-58  198.8   0.0      3e-58  197.9   0.0    1.3  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.9   0.0   1.7e-62     3e-58      28     451 .]     163     562 ..     150     562 .. 0.82

  Alignments for each domain:
  == domain 1  score: 197.9 bits;  conditional E-value: 1.7e-62
                 CCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-....B-SS--HHHHHHHHTT-EEEEEE--SGGG-SSSSTT-TT---BBTT CS
     Amidase  28 alaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskaleny....paekDatvverLkkaGavilgkTnmdefamgsstensvfgptrNPw 122
                  l++A++++++ a+gk+ + L GvPi vKD +dv+g++   G+k  +++    ++ k a  v++L++aGav+lgk  m+e++   +  +   g+  N +
  CCE26661.1 163 VLEAAKASTARWAAGKPLSILDGVPIGVKDDLDVEGYRNHIGMKYNAKSrtfdRQAKSAWCVQVLQDAGAVVLGKNRMHELGSAGQIAQ---GTPTNHM 258
                 5788999999999*****************************9877766111156679***********************99988887...******* PP

                 CTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHHHHHHHHHHHBS--TT-TTS---- CS
     Amidase 123 dksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsvedlalllrvilgedpkdstssvip 221
                 ++++ pGGSS+G A+a+ +g+vpl +GtD GGSiRiPAsf+gl+GlKP++ r        + ss+ v Gp+a +v dl + +r + + dp d  ++   
  CCE26661.1 259 NNEYYPGGSSSGPASALCSGMVPLTLGTDAGGSIRIPASFNGLYGLKPSHHRA-----GFMDSSMCVTGPMAANVADLTIGYRFMTQADPSDGVQAA-- 350
                 ************************************************99864.....4568999**************************999998.. PP

                 HHHHHHHHCTT---T.T-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT.-EEEEEE-CCGGGHHHHHHHHHHHHHHHHTTT-SSSSS---SS-SCCC CS
     Amidase 222 eesedlaeelkkslk.glriGvvkedgvasldpevqravekalkaLeeaG.hevvevelpsleealslyylilvaeassnlarylgvryerlsetkvls 318
                      +a +l  +++ +++ Gv+++  +  +dp+v++  +ka +   ++   evv++++p+l  a  +  +i ++e ++  +                +
  CCE26661.1 351 -----FARSLPPAPSaKKVMGVYRD-WWNAADPDVAQHCNKAMDYFAQQRgYEVVDISIPHLGDAQLAHGIICLVEMAEGAR---------------RR 428
                 .....34444444440555566665.568***************9987655**********977665444444444443322...............24 PP

                 CCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC..BSEEEEESSSSS--BCCCCCHHH..CSHHHHHGCCTTT...H CS
     Amidase 319 ellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafee..lDvllsPtaptpaprlgekdkti..dsytvlynlldftavvv 413
                 ++ p+   +l++++ k  +   + + +a+     ylk  ++r+ll+r fa +f++    +++sPt+p +  +++  d+    ++  +  + + ++   +
  CCE26661.1 429 TTNPADWLSLVSPSNKLLLSVATATPAAD-----YLKFNAMRTLLMRHFAHLFRKypGLLIMSPTTPLAGWPKHPGDEMHglNDGNTALRNMMYI---F 519
                 56666666777788888888888778877.....9********************64346789****9844433333333465666666666677...8 PP

                 HHHHTT--EEEEECCCC.T.....TECEEEEEEESTT-HHHHH CS
     Amidase 414 pvnlaglpalsvpagks.ed....glPvGvqvigkafqeetlL 451
                 ++nl+g+p++svp+g+  ++    +lP+G+  +++ ++ee+lL
  CCE26661.1 520 LANLTGTPSVSVPVGYApAKqgdgDLPIGLLATAEWGAEEQLL 562
                 ****************95559999*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 4188.24
//
Query:       CCE26662.1  [L=191]
Description: uncharacterized protein CPUR_00131 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1413.02
//
Query:       CCE26663.1  [L=516]
Description: probable zinc finger protein white collar 2 (wc-2) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-16   57.4   6.0    1.5e-15   56.5   6.0    1.5  1  GATA          GATA zinc finger
    1.1e-12   48.0   0.0    2.2e-12   47.1   0.0    1.5  1  PAS_3         PAS fold
    2.9e-05   24.0   0.0    6.4e-05   22.9   0.0    1.5  1  PAS           PAS fold
    0.00079   19.5   0.0     0.0017   18.5   0.0    1.5  1  PAS_11        PAS domain
     0.0045   17.2   0.0      0.009   16.3   0.0    1.5  1  PAS_4         PAS fold
     0.0063   16.6   0.2      0.014   15.5   0.2    1.6  1  Zn-ribbon_8   Zinc ribbon domain
     0.0094   16.2   0.0      0.031   14.5   0.0    1.9  2  PAS_9         PAS domain
  ------ inclusion threshold ------
       0.15   11.6   0.6       0.92    9.1   0.1    2.3  2  TF_Zn_Ribbon  TFIIB zinc-binding
        3.2    7.8   4.7        1.2    9.1   1.3    2.0  2  DUF4428       Domain of unknown function (DUF4428)


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   6.0   7.6e-19   1.5e-15       1      35 [.     465     499 ..     465     500 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 7.6e-19
        GATA   1 CsnCgttkTplWRrgpdgnksLCnaCGlyykkkgl 35 
                 C+ Cgt ++p+WR+gp+g+k+LCnaCGl+++kk++
  CCE26663.1 465 CTDCGTLDSPEWRKGPRGPKTLCNACGLRWAKKEK 499
                 *********************************97 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   1.1e-15   2.2e-12       3      74 ..     190     259 ..     188     264 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 1.1e-15
       PAS_3   3 yvserveeilGyspeellgkveswldlvhpeDrervrealqealkkgepyegeyRirrkdGeyrwveararv 74 
                 y+s ++ +i Gys++e+ +   +++dl+hp+D+  + ++l+e++++g p+   yR++ k+G+y  +e+ + +
  CCE26663.1 190 YASSSILNISGYSADEIHDV--FLKDLIHPDDQGVFVSELHESISSGNPLRLFYRFKAKNGSYAIFETIGHA 259
                 89******************..*********************************************99876 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   3.2e-08   6.4e-05       6      90 ..     171     254 ..     168     263 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3.2e-08
                 HHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEE CS
         PAS   6 ileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihle 90 
                 ++e l d+  ++D++gri y+++++  + G+s++e+    l dlih++d+  ++++l++ +++g++ r + + fk ++g++  +e
  CCE26663.1 171 VVEELKDFLHILDANGRIKYASSSILNISGYSADEIHDVFLKDLIHPDDQGVFVSELHESISSGNPLRLFYR-FKAKNGSYAIFE 254
                 78999*****************************************99998999999999999999888877.655577776665 PP

>> PAS_11  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   8.5e-07    0.0017       4      83 ..     178     253 ..     176     285 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.5e-07
      PAS_11   4 fttrldidgkIisvDtsaLrasfslglekeelvgrsiydLchpqdlstlkshlrevissngeatsslyRLrlsqdkfvkv 83 
                 f  +ld +g+I    +s L++    g++ +e+ ++ ++dL+hp+d     s l+e i s+g+   + yR++++++ +   
  CCE26663.1 178 FLHILDANGRIKYASSSILNI---SGYSADEIHDVFLKDLIHPDDQGVFVSELHESI-SSGNPLRLFYRFKAKNGSYAIF 253
                 666789999999999966665...689999***************999999999***.9**************9988543 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.5e-06     0.009       2      69 ..     173     240 ..     172     257 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.5e-06
       PAS_4   2 dslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefl 69 
                 + l d l++ld++gr+ ya+ ++  + g++++e+ +  l +l  ++d++ + + l + ++++ p++  
  CCE26663.1 173 EELKDFLHILDANGRIKYASSSILNISGYSADEIHDVFLKDLIHPDDQGVFVSELHESISSGNPLRLF 240
                 7899*************************************999999998888888777777776655 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2     7e-06     0.014       5      34 ..     462     492 ..     462     497 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7e-06
  Zn-ribbon_8   5 eYrCeeCghefe..vlqsisdapltaCPeCgs 34 
                  eY C++Cg + +  ++++  + p+t C +Cg 
   CCE26663.1 462 EYVCTDCG-TLDspEWRKGPRGPKTLCNACGL 492
                  8*******.88889999988***999****96 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.6e-05     0.031       6      75 ..     181     250 ..     177     270 .. 0.78
   2 ?   -3.1   0.1       4.7   9.3e+03      46      65 ..     304     322 ..     296     332 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-05
       PAS_9   6 idnpdgrilyaNeaalrllGyspeevlgksitdlf..vtdpeanerlraaleqgrkkerevevvlirknget 75 
                 i + +gri ya+ + l++ Gys++e+    ++dl+  ++     ++l++ + +g   + +  + +  kng++
  CCE26663.1 181 ILDANGRIKYASSSILNISGYSADEIHDVFLKDLIhpDDQGVFVSELHESISSGN--PLRLFYRFKAKNGSY 250
                 5679**999**************************55555555555565555555..777777777777665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.7
       PAS_9  46 anerlraaleqgrkkereve 65 
                 +nerl++ + ++r  e+eve
  CCE26663.1 304 ENERLKRRIAELR-REEEVE 322
                 5666666666666.233333 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00046      0.92      18      28 ..     461     471 ..     458     477 .. 0.86
   2 ?   -0.2   0.1      0.36   7.2e+02      20      27 ..     485     492 ..     484     495 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00046
                   TCEEESSSSBE CS
  TF_Zn_Ribbon  18 gelvCtdCGlV 28 
                    e+vCtdCG++
    CCE26663.1 461 EEYVCTDCGTL 471
                   69*******86 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.36
                   EEESSSSB CS
  TF_Zn_Ribbon  20 lvCtdCGl 27 
                   ++C +CGl
    CCE26663.1 485 TLCNACGL 492
                   68*****8 PP

>> DUF4428  Domain of unknown function (DUF4428)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.3    0.0006       1.2       7      26 ..     452     468 ..     451     470 .. 0.81
   2 ?   -2.0   0.1       1.7   3.5e+03      21      27 ..     485     491 ..     484     506 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0006
     DUF4428   7 kKigllkrlkleDgyvCkdC 26 
                 +K+++lk   ++++yvC+dC
  CCE26663.1 452 DKKKKLK---TAEEYVCTDC 468
                 5666666...********** PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
     DUF4428  21 yvCkdCl 27 
                 ++C++C 
  CCE26663.1 485 TLCNACG 491
                 5899995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      666  (0.0371465); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3778.12
//
Query:       CCE26664.1  [L=1310]
Description: probable RAD50 homolog uvs-6 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-28   99.1  21.4    4.7e-28   99.1  21.4    7.4  3  AAA_23           AAA domain
      7e-10   39.2   4.6    0.00046   20.1   0.2    3.2  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    1.1e-09   38.1  27.0    5.2e-09   35.9  27.0    2.2  1  SMC_N            RecF/RecN/SMC N terminal domain
    2.4e-06   27.7   0.2    1.6e-05   25.0   0.0    2.5  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
    2.7e-06   27.4  39.2       0.01   15.6   0.0    5.2  2  AAA_15           AAA ATPase domain
    0.00011   21.9  16.8    0.00011   21.9  16.8    6.4  6  Filament         Intermediate filament protein
     0.0023   18.0   0.7     0.0023   18.0   0.7    4.6  2  Exonuc_VII_S     Exonuclease VII small subunit
     0.0046   16.7   0.0       0.01   15.5   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.053   13.7   0.0      0.053   13.7   0.0    3.6  4  AAA_33           AAA domain
      0.086   13.4   0.0      0.086   13.4   0.0    6.2  3  ABC_tran         ABC transporter
       0.16   12.4   0.0       0.16   12.4   0.0    4.6  5  AAA_16           AAA ATPase domain
       0.21   12.2   1.5         67    4.1   1.6    4.6  1  DUF3800          Protein of unknown function (DUF3800)
       0.22   11.6   7.0        1.5    8.9   0.8    3.5  3  Strep_SA_rep     Streptococcal surface antigen repeat
        1.1    9.4   3.6         26    4.9   0.1    3.8  3  CODH_A_N         Carbon monoxide dehydrogenase subunit alpha 
        5.7    7.1   7.7        1.5    8.9   1.6    3.3  2  IKKbetaNEMObind  I-kappa-kinase-beta NEMO binding domain
        7.1    6.9   9.3       0.32   11.3   0.1    3.6  3  AAA_22           AAA domain
        7.1    7.1   8.3        1.4    9.4   0.1    3.6  2  Spore_SspJ       Small spore protein J (Spore_SspJ)
          9    6.7   9.2        6.3    7.2   0.3    3.7  3  Ribosomal_L5     Ribosomal protein L5


Domain annotation for each model (and alignments):
>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1  21.4   4.7e-31   4.7e-28       1     194 [.       6     286 ..       6     341 .. 0.70
   2 ?   -3.1  14.0       9.2   9.2e+03     109     198 ..     751     904 ..     739     927 .. 0.59
   3 ?    0.8   2.2      0.58   5.8e+02     110     184 ..    1004    1084 ..     942    1125 .. 0.70

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 4.7e-31
      AAA_23   1 kLkienfrsf...rdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgrytrsiererel 96 
                 kL+i+++rsf    ++ i+F+ +ltlI+G NG+GKTTi++++k+a++ge p+   +s++g++ +d+++  e++v+a+v+l+f ++++r+    +r+ +l
  CCE26664.1   6 KLSISGVRSFspsVREAIQFNTPLTLIVGLNGSGKTTIIECLKYATTGELPP---NSKGGAFIHDPKLCGEKEVMAQVKLQFCSINDRQ-HVATRSLQL 100
                 79********7654566*******************************8665...55689***************************96.777778888 PP

      AAA_23  97 skkkgkttkka.............klelleideleqfisellgskkiilnlilflgqer.feefel....kdkke........................ 153
                 + kk+ + +k+             ++ +++ ++l+++i+e lg++ +il+ ++f++q++  +++++    k++++                        
  CCE26664.1 101 TVKKTTRSQKTldcslvvvnngerTTTSTRQAQLDEMIPERLGVSAAILDAVIFCHQDEsLWPLSEpaalKKRFDeifealkytkaidnlkilrkkhve 199
                 88888777777666666666554456666669*****************66666555555555555422244444555555555555556666666666 PP

      AAA_23 154 .............................................rleelekeleeledekkllekl........eqekekekeleeleeelee 194
                                                              +++e +++++e+ +       +        +++ +k+++le  +++ +e
  CCE26664.1 200 tlgnlqndeahnkvnkdrgqraekrmtalqteieeareqcerlssEMQETQEKIREKRE-------QansflqivQNLDNKREQLEYRQDAVNE 286
                 66666666666666666666666644444443333333333333333333333333222.......0222222235555555555555555555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.2
      AAA_23 109 lelleideleqfisellgskkiilnlilflgqer..............feefelkdkke.......................................r 154
                  el + +++ + ++ +++  +++l+  + +  ++                + +l    +                                       +
  CCE26664.1 751 AELPSLRDQSKAVEAEIDLLERQLEDQQAKVTGEeekvrdldglaktvSTMSQL----SkdikdsegqverimsqhmsagaatrsaeeihelqagigeQ 845
                 455555555666666666666666444333333311333333333332111111....02222355555566666666666666666666666677779 PP

      AAA_23 155 leelekeleeledekkllekl.....eqekekek...............eleeleeeleeilke 198
                 l+ l+  + +l+++++ ++++     +     e                +  +++ ++++++++
  CCE26664.1 846 LRGLKSRISKLTTDRQRMKDQlssleL-----ERselknkvgraigqldKKADIQTQIQSLKED 904
                 999999999999999999999665542.....22223346777777776666666666666654 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.58
      AAA_23  110 elleideleqfisellgskkiilnlilflgqerfeefelkdkke.rleelekeleeledekkllekleqekekek.....e 184 
                    ++ ++l+q i++   skk+i++++ + +  r+ e ++ d  e + +++ +++e l+ e++ le++ +++  e      +
  CCE26664.1 1004 LTVRANKLKQDIDSGDRSKKNISDNLHYRKHLRQLEVLRRDIAElQDRNAHEDYERLQSEARILENQANRLLAERgsvmgT 1084
                  333447777777753334444777777877777777777666666777777777888888888887755555444444443 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   6.7e-07   0.00067       1      42 [.      29      61 ..      29      78 .. 0.74
   2 ?   -2.6   0.2       3.6   3.6e+03     128     147 ..     299     318 ..     235     362 .. 0.52
   3 !   20.1   0.2   4.6e-07   0.00046     219     300 ..    1148    1274 ..     994    1277 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.7e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggi 42
                l++++G NgsGK++++++l+++         +t el+++++ 
  CCE26664.1 29 LTLIVGLNGSGKTTIIECLKYA---------TTGELPPNSKG 61
                69*****************998.........44555554444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.6
      AAA_21 128 kelsvsepndlqfgkaltdi 147
                 ++l+ s ++ +q+++++ ++
  CCE26664.1 299 ASLEHSLEQYEQSMERYRED 318
                 22222222222222222222 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 4.6e-07
      AAA_21  219 r....................................gvvflengdgqelparel.SdGtkrllalltallralkkg...sllliDEpEngLHPkll 275 
                  +                                    ++++   +++ e ++r   S G+k l+ ++  l+ a + g   +l+++DEp ++L+   +
  CCE26664.1 1148 EvnriagelwqatyqgtdidtilirsdnessagkrsyNYRLCMVKQDTEMDMRGRcSAGQKVLASIIIRLALAESFGvncGLIALDEPTTNLDRDNI 1244
                  0555555555555555555555555555555666666666666777777777777899*************************************** PP

      AAA_21  276 rrllell......kelsrngaQviltTHSpl 300 
                  ++l+e l      ++ + ++ Q+i+ TH+  
  CCE26664.1 1245 KSLAESLhaiiraRQGQ-TNFQLIVITHDED 1274
                  ****9999886644444.6*********954 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9  27.0   5.3e-12   5.2e-09       2     205 ..       4    1279 ..       3    1299 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 5.3e-12
                  EEEEEEESETTEE.CEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSC CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N    2 lkrleienFksya.gktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkklkiekee 96  
                  + +l i++++s+    +  ++f++ +t ivG NGSGK+ +++ +++    +      ++k  + ih  +  +++   a+v++ f   ++++++ + +
  CCE26664.1    4 IGKLSISGVRSFSpSVREAIQFNTPLTLIVGLNGSGKTTIIECLKYATTGELP---PNSKGGAFIHDpKLCGEKEVMAQVKLQFCSINDRQHVATRS 97  
                  67899*******833577899*************************8764333...5788999****8778899999*******7777665555554 PP

                  ..EEEEEEEETTSE...EEEEETTEEE-HHHHHHHHHCTT-STT..................................................... CS
                  ..xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
       SMC_N   97 ..vsisrrvkrkge...seykingkevtkkevsellesagiske..................................................... 135 
                    ++++++  ++++   s + +n+ e t +  ++   +++i +                                                      
  CCE26664.1   98 lqLTVKKTTRSQKTldcSLVVVNNGERTTTSTRQAQLDEMIPERlgvsaaildavifchqdeslwplsepaalkkrfdeifealkytkaidnlkilr 194 
                  11555555555555555555556555555555554445555555889999*********************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE26664.1  195 kkhvetlgnlqndeahnkvnkdrgqraekrmtalqteieeareqcerlssemqetqekirekreqansflqivqnldnkreqleyrqdavnelrqtl 291 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE26664.1  292 delpgddaslehsleqyeqsmeryredaeqnksrynelqkeladarkdlsaklseqgkhqsdkekyerqckarmemirdaatahgfdgydgddlpde 388 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE26664.1  389 lvrsfhsqiqnlmgdkkrhlervqkenateldsatgvitelegqkaartqdrvsakqrmaaiekrtsilqneislidvdegakaildgqleainskf 485 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE26664.1  486 gslqaelekanwdqqlsdendklwqleseneklsrelvectrlaseraqldlrkkevadrkfklqtlettwkpklsvaiggdwdtvdtlesrfqava 582 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE26664.1  583 sqqnkalqearkaleqikhkqqkeeyelqnvkealetktseaarcekkvldvlremrddaqiddysgevdametqveeyrnelslfdalvdyytkck 679 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE26664.1  680 rmleskkkcllcerqfgddqtasldrldkkiekqlnpkgksdvegelkdavvsldalravrssyekykglsaelpslrdqskaveaeidllerqled 776 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE26664.1  777 qqakvtgeeekvrdldglaktvstmsqlskdikdsegqverimsqhmsagaatrsaeeihelqagigeqlrglksrisklttdrqrmkdqlsslele 873 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE26664.1  874 rselknkvgraigqldkkadiqtqiqslkedmahqrqvmhgadealekiepsivearsardavlgkgrakeqvviterdaianwlsefnmldndmqa 970 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE26664.1  971 yierggpsslasneraiaalekaisrtdadivdltvranklkqdidsgdrskknisdnlhyrkhlrqlevlrrdiaelqdrnahedyerlqsearil 1067
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE26664.1 1068 enqanrllaergsvmgtmktkdeelgrllqewtldykdakhkyrechirvettkaaiedlaqcgaaldravmqyhslkmaevnriagelwqatyqgt 1164
                  ************************************************************************************************* PP

                  .....................................CS-HHHHHHHHHHHHHHHHCC.S--S.EEEECTTTTTS-HHHHHHHHHHHH......HHC CS
                  .....................................xxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxx......xxx RF
       SMC_N  136 .....................................lLSgGektLvalaLlfAiqkv.kpap.lyllDeidaaLDeknvkkvaellk......eks 187 
                                                         S G+k L+++ +++A+ +    ++ l  lDe   +LD  n+k +ae l+      + +
  CCE26664.1 1165 didtilirsdnessagkrsynyrlcmvkqdtemdmrgRCSAGQKVLASIIIRLALAESfGVNCgLIALDEPTTNLDRDNIKSLAESLHaiirarQGQ 1261
                  ******************************************************876514444499******************9886555454567 PP

                  TTSEEEEE-SSHHHCCC- CS
                  xxxxxxxxxxxxxxxxxx RF
       SMC_N  188 knaQfivislreemleka 205 
                  +n+Q+ivi+++e++l+++
  CCE26664.1 1262 TNFQLIVITHDEDFLRHM 1279
                  88************9988 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       4.2   4.1e+03       2      29 ..     332     360 ..     331     363 .. 0.73
   2 !   25.0   0.0   1.6e-08   1.6e-05      21      89 ..    1194    1252 ..    1179    1253 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.2
     SbcCD_C   2 evldyRnylsfevevrdedgkeke.lsrs 29 
                 e++d R+ ls +++++ +++++ke  +r+
  CCE26664.1 332 ELADARKDLSAKLSEQGKHQSDKEkYERQ 360
                 789*************6655555535555 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 1.6e-08
     SbcCD_C   21 gkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89  
                  ++e    +++g+ S G+k +la++++ +ala  ++       +++l++LDE   +lD ++i++l e l+
  CCE26664.1 1194 DTE---MDMRGRCSAGQK-VLASIIIRLALAESFGV------NCGLIALDEPTTNLDRDNIKSLAESLH 1252
                  233...6899********.*****************......5********************999875 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5  37.3       0.4     4e+02      17     235 ..      21     383 ..       3     923 .. 0.76
   2 !   15.6   0.0     1e-05      0.01     234     368 ..    1108    1275 ..     992    1276 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.4
      AAA_15  17 veidlseeltvliGkNnsGKSsilealdlFlnnkekkn................kkvikiekedleifenis.eskdikIdvef............... 83 
                   i+++  lt+++G N+sGK++i+e l++  + + + n                +    ++ ++++i++ +    ++++++v+                
  CCE26664.1  21 EAIQFNTPLTLIVGLNGSGKTTIIECLKYATTGELPPNskggafihdpklcgekEVMAQVKLQFCSINDRQHvATRSLQLTVKKttrsqktldcslvvv 119
                 46999999*******************999998876668788888888888885222333334444433222023344444444888888888888999 PP

      AAA_15  84 ...............................................................................................aek. 86 
                                                                                                                + + 
  CCE26664.1 120 nngertttstrqaqldemiperlgvsaaildavifchqdeslwplsepaalkkrfdeifealkytkaidnlkilrkkhvetlgnlqndeahnkvnK-Dr 217
                 999999999999999999999999999988888777766666666665555444444444444444444444444444444444444444444321.12 PP

      AAA_15  87 ekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkks.kkelpkekeeklekekeelkidkedlkklikkleeslkkee 184
                 +++ e   t+ ++e+++a  + ++++s++++t ++   k ++ +   +++++ ++k    e      ++l +  +el  d+ +l+  ++++e+s++ + 
  CCE26664.1 218 GQRAEKRMTALQTEIEEAREQCERLSSEMQETQEKIREKREQANSFLQIVQNLDNKReQLEYRQDAVNELRQTLDELPGDDASLEHSLEQYEQSMERYR 316
                 222222222333333333333333333333333333333332222222222222222122222333344444444444444444444444444444444 PP

      AAA_15 185 elknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekl.....................e 235
                        +++ k+++++ +++  d +++ + +l ++ k +  +e+++ +                      +
  CCE26664.1 317 -----EDAEQNKSRYNELQKELADARKDLSAKLSEQGKHQSDKEKYERQCkarmemirdaatahgfdgydgD 383
                 .....3344444444444444444444444444444444443333222224444444444444444444443 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1e-05
      AAA_15  234 l...........eeelteklkeiqeklkeidkklaeelkkilkkkidkikkfnykgkkneeieik..................ddeelplnknG... 298 
                              ++  +e+l +   +l+ +  ++ + +  +++ +  ++ +  y+g +  +i i+                   +++++++++G   
  CCE26664.1 1108 HkyrechirvetTKAAIEDLAQCGAALDRAVMQYHSLKMAEVNRIAGELWQATYQGTDIDTILIRsdnessagkrsynyrlcmVKQDTEMDMRGrcs 1204
                  1444555555444445555555555555555555444446666666666666666666666666677777777777778888877777777776333 PP

      AAA_15  299 sGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnkt....QviitTHSphi 368 
                   G++ l ++i+ ++ ae       +  +++++EP ++L  ++ k+l+++l  +++  ++    Q+i+ TH + +
  CCE26664.1 1205 AGQKVLASIIIRLALAESF---GVNCGLIALDEPTTNLDRDNIKSLAESLHAIIRARQGqtnfQLIVITHDEDF 1275
                  6******************...99******************************9999999*********9876 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6  28.9   3.9e-05     0.038     130     284 ..     187     346 ..     178     351 .. 0.86
   2 ?   -1.3   3.0       1.3   1.3e+03      52      81 ..     497     526 ..     466     554 .. 0.46
   3 ?    0.4   2.0      0.39   3.9e+02      18      91 ..     506     578 ..     498     580 .. 0.74
   4 ?    4.1  13.2     0.029        29     200     278 ..     578     665 ..     570     685 .. 0.62
   5 !   21.9  16.8   1.1e-07   0.00011      81     282 ..     700     909 ..     669     913 .. 0.83
   6 ?   -3.2  10.5       4.8   4.8e+03     100     257 ..     982    1149 ..     928    1168 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHH CS
    Filament 130 keelaflkkvheeEvkelqkqvseqvlvevdaarkld.....Lteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrr 223
                  ++l++l+k h e + +lq+   ++ +v+ d +++ +     L++ ++e r+q e+l ++ +e  +e  ++k e++++   +  ++l + +e+++  + 
  CCE26664.1 187 IDNLKILRKKHVETLGNLQNDE-AHNKVNKDRGQRAEkrmtaLQTEIEEAREQCERLSSEMQE-TQEKIREKREQANS-FLQIVQNLDNKREQLEYRQD 282
                 689*****************99.99999999999999999999999*********99887655.55556777777765.55678899999999999999 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 224 qiqsleieleslkkqkasleaqlaelee...rleaeleklqeklseleeelaeireemarqlre 284
                  +++l+  l++l +  asle++l+  e+   r+ +++e+ ++  +el++ela++r+++ ++l+e
  CCE26664.1 283 AVNELRQTLDELPGDDASLEHSLEQYEQsmeRYREDAEQNKSRYNELQKELADARKDLSAKLSE 346
                 ***********************999962226667888889999***************99988 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  52 yekeleelrkqldeltkerarlqleldnlr 81 
                 + ++l++  ++l +l++e+++l  el +  
  CCE26664.1 497 WDQQLSDENDKLWQLESENEKLSRELVECT 526
                 444444444444444444444444332222 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.39
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX CS
    Filament  18 dkVraLEqenkeLeakieeleekksaevsklkelyekeleelrkqldeltke.rarlqleldnlreeledlrkky 91 
                 dk  +LE en++L  ++ e      a+++   +l +ke+++ + +l++l++  + +l + ++   +++++l +++
  CCE26664.1 506 DKLWQLESENEKLSRELVECTRL--ASERAQLDLRKKEVADRKFKLQTLETTwKPKLSVAIGGDWDTVDTLESRF 578
                 78999**********99999888..33333567889999999999988865425677777766666666666665 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.029
                 XXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 200 lqeaaeknsealrsakeeitelrrqiqsleieleslkkq.......kasleaqlael..eerleaeleklqeklseleeelaeireem 278
                  q  a+++++al++a++ +++++++ q+ e el+++k++       +a  e+++ ++  e r +a+++++  +++++e++++e r+e+
  CCE26664.1 578 FQAVASQQNKALQEARKALEQIKHKQQKEEYELQNVKEAletktseAARCEKKVLDVlrEMRDDAQIDDYSGEVDAMETQVEEYRNEL 665
                 4566777777888888888888888888888877776540000000344455555543344555566666666666666666666655 PP

  == domain 5  score: 21.9 bits;  conditional E-value: 1.1e-07
                 XXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXX CS
    Filament  81 reeledlrkkyekeln..kreevEaelkalrkdldeatlarvdLekkvesLkeelaflk...kvheeEvkelqkqvs.eqvlvevdaarkld...Ltei 170
                  ++l++l kk+ek+ln   +++vE elk+    ld++   r+  e k++ L  el  l+   k  e+E++ l++q++ +q++v  ++++  d   L+++
  CCE26664.1 700 TASLDRLDKKIEKQLNpkGKSDVEGELKDAVVSLDALRAVRSSYE-KYKGLSAELPSLRdqsKAVEAEIDLLERQLEdQQAKVTGEEEKVRDldgLAKT 797
                 56789999*****9973256899*******************998.799*****999984445789**********99777776665555552277777 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 171 lkeiraqyeelaeknreeaeewyksklee..lqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklsel 267
                 ++ + +q  + +++++ ++e+  ++ ++   ++++ae+ +e      e++  l+ +i +l+++ + +k q +sle + +el++++ +++ +l +k +++
  CCE26664.1 798 VSTM-SQLSKDIKDSEGQVERIMSQHMSAgaATRSAEEIHELQAGIGEQLRGLKSRISKLTTDRQRMKDQLSSLELERSELKNKVGRAIGQLDKK-ADI 894
                 7666.799**************999886421455555555555567899999***************************************9877.689 PP

                 HHHHHHHHHHHHHHH CS
    Filament 268 eeelaeireemarql 282
                 ++++++++e+ma q 
  CCE26664.1 895 QTQIQSLKEDMAHQR 909
                 9**********9986 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 4.8
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX..XXXX..XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX CS
    Filament  100 evEaelkalrkdldeatlarvdLekkvesLkeelaf...lkkvheeEvkelq..kqvs..eqvlvevdaarkld.Lteilkeiraqyeelaeknree 188 
                  + E++++al k +  +    vdL  + ++Lk++++     kk+ ++ ++  +  +q++   + + e+++ +  +  ++  +e r   e++a++  +e
  CCE26664.1  982 SNERAIAALEKAISRTDADIVDLTVRANKLKQDIDSgdrSKKNISDNLHYRKhlRQLEvlRRDIAELQDRNAHEdYERLQSEAR-ILENQANRLLAE 1077
                  567777777788877777788888888888888764222455555555332200233344444455544333332333333333.455555554444 PP

                  ...XXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  189 ...aeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleael 257 
                     +  + k+k eel +  ++ + + + ak+   e + ++++ ++ +e+l +  a+l +++        ae+
  CCE26664.1 1078 rgsVMGTMKTKDEELGRLLQEWTLDYKDAKHKYRECHIRVETTKAAIEDLAQCGAALDRAVMQYHSLKMAEV 1149
                  111445677788888888888888888888888888888888888888888888888877776655555555 PP

>> Exonuc_VII_S  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.7   2.3e-06    0.0023       3      38 ..     282     317 ..     281     321 .. 0.94
   2 ?   -2.5   0.1       5.5   5.4e+03      30      46 ..    1121    1137 ..    1117    1140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.3e-06
  Exonuc_VII_S   3 ealaeLeeIvekLEsgelsLeeslklyeeGvkLlke 38 
                   +a++eL + +++L  ++ sLe sl++ye+ ++ ++e
    CCE26664.1 282 DAVNELRQTLDELPGDDASLEHSLEQYEQSMERYRE 317
                   799****************************98875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.5
  Exonuc_VII_S   30 eeGvkLlkeCekkLdea 46  
                    + +++ l++C + Ld a
    CCE26664.1 1121 KAAIEDLAQCGAALDRA 1137
                    7799999*****99987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.1e-05      0.01      18      45 ..      24      50 ..      16      58 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
      AAA_29 18 eidlkg.atlltGpsGsGKSTllDAiqal 45
                +++     tl++G +GsGK+T++  +++ 
  CCE26664.1 24 QFN--TpLTLIVGLNGSGKTTIIECLKYA 50
                555..347***************888776 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.3e-05     0.053       1     109 [.      29     160 ..      29     163 .. 0.68
   2 ?   -2.9   0.6       7.1   7.1e+03      43     141 ..     219     240 ..     200     289 .. 0.57
   3 ?   -2.8   0.2       6.4   6.3e+03      25      56 ..     312     334 ..     302     375 .. 0.45
   4 ?   -2.1   0.1       3.8   3.8e+03      33      73 ..    1041    1081 ..    1011    1097 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.3e-05
      AAA_33   1 lvllvGlpGsGKstlaerl....lkklg........avllssdtlrrrlfg.....tdqqsktdytrvldrlyq.ilnelarkalsagrn.vildatnl 80 
                 l+l+vGl+GsGK+t +e l        g        + ++  ++l    ++      +  s++d+++v++r  q +++++ r+  +  ++ v++ ++ +
  CCE26664.1  29 LTLIVGLNGSGKTTIIECLkyatT---GelppnskgGAFIHDPKLCGEKEVmaqvkLQFCSINDRQHVATRSLQlTVKKTTRSQKTLDCSlVVVNNGER 124
                 6799*************9965552...144466677889999997775555444556666999999988886653778888888888888566677755 PP

      AAA_33  81 sr.rer.arflklar.rlgvp....vrivvvetdee 109
                 +  ++r a+++++ + rlgv     +++++++ de+
  CCE26664.1 125 TTtSTRqAQLDEMIPeRLGVSaailDAVIFCHQDES 160
                 533444257777755477777555566677777766 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.1
      AAA_33  43 qsktdytrvldrlyqilnelarkalsagrnvildatnlsrrerarflklarrlgvpvrivvvetdeetlkeRlakRaangddrsevpeealdrqkarfe 141
                 q+ +++ ++                                                                              +  +++ ++++e
  CCE26664.1 219 QRAEKRMTA-----------------------------------------------------------------------------LQTEIEEAREQCE 240
                 333322222.............................................................................2222222222222 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.4
      AAA_33  25 avllssdtlrrrlfgtdqqsktdytrvldrly 56 
                 +++ ++d++ ++ ++++ q++           
  CCE26664.1 312 MERYREDAEQNKSRYNELQKEL---------A 334
                 5556666644333332222221.........1 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 3.8
      AAA_33   33 lrrrlfg.tdqqsktdytrvldrlyqilnelarkalsagrnv 73  
                  lrr +++ +d++  +dy r l++  +il++ a++ l+++++v
  CCE26664.1 1041 LRRDIAElQDRNAHEDYER-LQSEARILENQANRLLAERGSV 1081
                  4455555444444555555.4566668888887777776665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.6e-05     0.086      14      32 ..      30      48 ..      25     137 .. 0.87
   2 ?   -0.9   2.3       2.2   2.2e+03      58      58 ..     850     850 ..     743     999 .. 0.58
   3 ?    4.8   0.0     0.038        38     101     136 ..    1196    1236 ..    1042    1237 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.6e-05
                EEEEESTTSSHHHHHHHHT CS
                xxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlklla 32
                + ivG nG+GK+t++++l 
  CCE26664.1 30 TLIVGLNGSGKTTIIECLK 48
                78*************9986 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.2
                 C CS
                 x RF
    ABC_tran  58 r 58 
                 +
  CCE26664.1 850 K 850
                 2 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.038
                  GESTTSGGS-HHHHH......HHHHHHHHHHTSSEEEEESTT CS
                  xxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  101 vvksspssLSgGqkq......rvalarallkkpkllllDEpt 136 
                   + +     S Gqk+      r+ala+++  +  l+ lDEpt
  CCE26664.1 1196 EM-DMRGRCSAGQKVlasiiiRLALAESFGVNCGLIALDEPT 1236
                  33.334778999998777777999*****************9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00016      0.16      21      47 ..      24      50 ..      17      98 .. 0.84
   2 ?   -3.0   4.0       8.2   8.1e+03      64     126 ..     274     333 ..     225     410 .. 0.59
   3 ?   -1.6   0.0       3.2   3.2e+03      93     132 ..     411     450 ..     377     534 .. 0.64
   4 ?   -2.9   0.2       7.6   7.6e+03      82     103 ..     596     619 ..     563     648 .. 0.42
   5 ?   -1.7   0.5       3.4   3.4e+03      87     107 ..     696     732 ..     658     870 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00016
      AAA_16 21 sgrpelvllsGesGvGKsslvrellra 47
                +  ++l+l++G  G+GK++++++l+ a
  CCE26664.1 24 QFNTPLTLIVGLNGSGKTTIIECLKYA 50
                556799***************999844 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.2
      AAA_16  64 esaipysa.laqalareellrqlldeaesaeleawrekleealaavpelagaeasrllellkrl 126
                 +++++y +  ++ l r + l +l  +  +a+le+  e+ e++++  +e+a + +sr +el k+l
  CCE26664.1 274 REQLEYRQdAVNEL-R-QTLDELPGD--DASLEHSLEQYEQSMERYREDAEQNKSRYNELQKEL 333
                 33344433344444.3.444444444..223444444444444444444444444444443333 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.2
      AAA_16  93 eleawrekleealaavpelagaeasrllellkrllallsr 132
                  + + +++l++a++ + el+g++a r  + +++  + ++ 
  CCE26664.1 411 VQKENATELDSATGVITELEGQKAARTQDRVSAKQRMAAI 450
                 4444444455555566666666665555555544433333 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 7.6
      AAA_16  82 lrqllde..aesaeleawreklee 103
                 l+q++ +  +e+ el+  +e+le+
  CCE26664.1 596 LEQIKHKqqKEEYELQNVKEALET 619
                 111111111122222223332222 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 3.4
      AAA_16  87 deaesaeleawrekleeala................a 107
                  ++++a+l++ ++k+e++l+                +
  CCE26664.1 696 GDDQTASLDRLDKKIEKQLNpkgksdvegelkdavvS 732
                 4455556666666666655533332222222222220 PP

>> DUF3800  Protein of unknown function (DUF3800)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   1.6     0.067        67      52      52 ..     316     316 ..     113    1188 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.067
     DUF3800  52 a 52 
                 +
  CCE26664.1 316 R 316
                 1 PP

>> Strep_SA_rep  Streptococcal surface antigen repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.8    0.0015       1.5       7      20 ..     305     318 ..     302     323 .. 0.84
   2 ?   -3.0   0.2         8     8e+03      18      24 ..     330     336 ..     330     336 .. 0.85
   3 ?    4.6   0.0     0.033        33      14      22 ..     408     416 ..     407     417 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0015
                   HHHHHHHHHHHHHH CS
  Strep_SA_rep   7 LakYeaeLAaVQKa 20 
                   L++Ye+ ++++ ++
    CCE26664.1 305 LEQYEQSMERYRED 318
                   9**********997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8
                   HHHHHH- CS
  Strep_SA_rep  18 QKanady 24 
                   QK++ad+
    CCE26664.1 330 QKELADA 336
                   8999996 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.033
                   HHHHHHHHH CS
  Strep_SA_rep  14 LAaVQKana 22 
                   L++VQK+na
    CCE26664.1 408 LERVQKENA 416
                   89******8 PP

>> CODH_A_N  Carbon monoxide dehydrogenase subunit alpha N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.4   6.4e+03      74      82 ..     175     183 ..     174     184 .. 0.89
   2 ?    2.8   0.2      0.12   1.2e+02      31      65 ..     580     615 ..     576     624 .. 0.80
   3 ?    4.9   0.1     0.026        26      35      78 ..     786     837 ..     781     839 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.4
    CODH_A_N  74 aEiieAlkY 82 
                  Ei eAlkY
  CCE26664.1 175 DEIFEALKY 183
                 59******* PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.12
    CODH_A_N  31 altGekvktlgdleevLerars.llkeeetLedald 65 
                 a+ +++ k l++++++Le++++ + kee +L+++ +
  CCE26664.1 580 AVASQQNKALQEARKALEQIKHkQQKEEYELQNVKE 615
                 78889999************9845556666887765 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.026
    CODH_A_N  35 ekvktlgdleevLerarsllkeeet........LedaldaGlatllaaEiie 78 
                 ekv+ l+ l++ + ++ +l k+ ++        + + ++aG at  a+Ei e
  CCE26664.1 786 EKVRDLDGLAKTVSTMSQLSKDIKDsegqveriMSQHMSAGAATRSAEEIHE 837
                 5677777777777777776666666777888889****************87 PP

>> IKKbetaNEMObind  I-kappa-kinase-beta NEMO binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   2.1e+03      17      33 ..      97     113 ..      95     115 .. 0.86
   2 ?    8.9   1.6    0.0016       1.5       4      24 ..     232     252 ..     232     265 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
  IKKbetaNEMObind  17 lmqettkeqdsSlmslD 33 
                       +q t+k++ +S ++lD
       CCE26664.1  97 SLQLTVKKTTRSQKTLD 113
                      6888************9 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0016
  IKKbetaNEMObind   4 leEnqnyLsqLtslmqettke 24 
                      +eE+ + +++L+s mqet ++
       CCE26664.1 232 IEEAREQCERLSSEMQETQEK 252
                      79***************8765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00032      0.32       6     102 ..      28     124 ..      23     143 .. 0.66
   2 ?   -2.2   0.6       4.5   4.5e+03      44      71 ..     267     297 ..     223     364 .. 0.63
   3 ?   -3.1   0.1         9     9e+03      52      99 ..     421     468 ..     389     482 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka...erlsseellealeqalrarav..ielliiDE 99 
                  +++++G  G+GKTt ++ l++  +   +   ++++ +f+  p++++ k+++ ++  ++ + +++   ++   + l  ++ +  r++++   +l+++ +
  CCE26664.1  28 PLTLIVGLNGSGKTTIIECLKYATT--GELPPNSKGGAFIHDPKLCGEKEVMAQVKLQFCSINDRqhvAT---RSLQLTVKKTTRSQKTldCSLVVVNN 121
                 5789*****************9974..2333367777899999999888888888888776666633222...22223333333333333336666666 PP

      AAA_22 100 aqh 102
                  ++
  CCE26664.1 122 GER 124
                 555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.5
      AAA_22  44 fvtlpsstsskdllrellralglelka...e 71 
                   +l ++ ++ + +++ +++l + l++    
  CCE26664.1 267 VQNLDNKREQLEYRQDAVNELRQTLDElpgD 297
                 3333333444444444444444444444442 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 9
      AAA_22  52 sskdllrellralglelkaerlsseellealeqalrarav.ielliiDE 99 
                 s + + +el  +   ++ + r s ++ ++a+e+  +  +  i+l+ +DE
  CCE26664.1 421 SATGVITELEGQKAARTQD-RVSAKQRMAAIEKRTSILQNeISLIDVDE 468
                 3333333333333333333.44444444444444444444677777776 PP

>> Spore_SspJ  Small spore protein J (Spore_SspJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1    0.0014       1.4       5      27 ..     214     236 ..     213     249 .. 0.93
   2 ?   -0.1   0.9       1.2   1.2e+03       6      28 ..     600     622 ..     599     625 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0014
  Spore_SspJ   5 nKDkgkksEKdknavdgaLEdAg 27 
                 nKD+g+++EK   a++  +E+A 
  CCE26664.1 214 NKDRGQRAEKRMTALQTEIEEAR 236
                 9********************96 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
  Spore_SspJ   6 KDkgkksEKdknavdgaLEdAgk 28 
                 K k++k E + + v+ aLE   +
  CCE26664.1 600 KHKQQKEEYELQNVKEALETKTS 622
                 78999*9************7655 PP

>> Ribosomal_L5  Ribosomal protein L5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.3    0.0064       6.3      21      51 ..     413     443 ..     409     445 .. 0.85
   2 ?    2.6   0.9      0.18   1.8e+02      20      38 ..     582     600 ..     580     605 .. 0.86
   3 ?   -1.9   0.1       4.5   4.5e+03      22      45 ..     758     782 ..     755     789 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0064
                   SSCHHHHHCCHHHHCCCHSS--EECC--TTC CS
  Ribosomal_L5  21 gedkkllekaakeLaeItGQkPvvtkakksi 51 
                   +e++  l++a  +++e+ GQk+ +t+ + s 
    CCE26664.1 413 KENATELDSATGVITELEGQKAARTQDRVSA 443
                   456677*******************998775 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.18
                   SSSCHHHHHCCHHHHCCCH CS
  Ribosomal_L5  20 agedkkllekaakeLaeIt 38 
                   a++++k+l++a k L++I 
    CCE26664.1 582 ASQQNKALQEARKALEQIK 600
                   67888*************6 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.5
                   SCHHHHHCCHHHHC.CCHSS--EEC CS
  Ribosomal_L5  22 edkkllekaakeLa.eItGQkPvvt 45 
                   +++k++e+ ++ L+ ++ +Q++ vt
    CCE26664.1 758 DQSKAVEAEIDLLErQLEDQQAKVT 782
                   6789999999999999****99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3223  (0.179765); expected 358.6 (0.02)
Passed bias filter:                      846  (0.0471861); expected 358.6 (0.02)
Passed Vit filter:                       211  (0.0117686); expected 17.9 (0.001)
Passed Fwd filter:                       133  (0.00741815); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 3.29u 0.46s 00:00:03.75 Elapsed: 00:00:00.79
# Mc/sec: 4999.10
//
Query:       CCE26665.1  [L=624]
Description: uncharacterized protein CPUR_00134 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-10   40.3   2.7    2.8e-10   40.3   2.7    4.7  4  PPP4R2     PPP4R2


Domain annotation for each model (and alignments):
>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   3.8     0.032   5.7e+02     197     262 ..      54     114 ..      34     134 .. 0.48
   2 !   40.3   2.7   1.6e-14   2.8e-10      74     282 ..     138     376 ..     128     386 .. 0.71
   3 ?  -16.3  41.1         1   1.8e+04     215     287 ..     430     543 ..     407     548 .. 0.52
   4 ?  -18.4  59.2         1   1.8e+04     215     284 ..     544     611 ..     538     619 .. 0.36

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.032
      PPP4R2 197 elspfikeidsimsvnlgfedeeekeedd....neseesaseseeiteekdesvkveekdddeeddeedt 262
                 + sp ++++++i++++ ++e +++ ++++     +s++s+se+ + ++e+++         d+   e++ 
  CCE26665.1  54 PPSPPRTTTTTIANTTVNTETTNSFSSKEdrrpPSSPSSPSEQPSSIQEANK---------DNAPAENTA 114
                 4444444444555555555554444442211111234444444443333333.........333333333 PP

  == domain 2  score: 40.3 bits;  conditional E-value: 1.6e-14
      PPP4R2  74 nleemkerllekldsfnaa.PFTiqRicELltdPkkyYkeldKFvrAleKnilVvStiepggkr......eseaeeeksnsesseniingvlseelnse 165
                 ++++m   + + ++ f++  P TiqR+ EL   Pk +Y++l  ++ Al++ + V+S  +           +   +  +    +++ + +g+   +    
  CCE26665.1 138 QFNNMLVAIRKHIEMFDKNpPNTIQRLAELILQPKAHYRNLAPYLHALNRVVRVTSGAN----IyplppaT---FDPSRLRLNGDAAQDGDAAAQSVAW 229
                 5888999999999999765279**********************************763....12332331...4444444444445555333333333 PP

      PPP4R2 166 keedkansssqedsedvslvsipwvdekteselspfikeidsimsvnlgfedeeekeedd...............................neseesas 233
                 +++  a +  +ed   + l+ ipw++  + s++    + ++ ++s+ +g +  +e +e+                                + +++++ 
  CCE26665.1 230 SNPTLALGT-DEDLGGALLTPIPWLTRRSLSPEGDNDRGTTPTVSARSGAQIHSEATETIdgpngvgrietvsvsvngipstghhargvqeHLAGAVPG 327
                 444444443.34566777888888888887777777777777777777666555544432477788888888888888888888888887766677888 PP

      PPP4R2 234 eseeiteekdesvkveekdddeeddeedtdyveeeeddesedddeeeee 282
                 + ++  ee+++ +  +++++d++++++++d++e++++d+ + dd+e++e
  CCE26665.1 328 SLSTRAEESSDASPRQTPEKDQDQEQDQKDANEKQDQDQRQGDDQEQQE 376
                 8888888888888888899999999999999998888888888888776 PP

  == domain 3  score: -16.3 bits;  conditional E-value: 1
      PPP4R2 215 fedeeekeedd......neseesaseseeiteekdesvkvee........................................kdddeeddeedtdyvee 267
                  +++++++ dd      +++++  +++ ++ +e+++ +kv++                                        k    e++ee ++ ++ 
  CCE26665.1 430 RKQDDDHKADDdagspsSSESAGTKREAQQALEAEHAKKVKQdmeaeaeralpavvgdeavpvsggggaaleeekkgeregeK----EEKEEGEEEKK- 523
                 333333333232455542222222222333333444444444888889999999*****************999977643322....22222222222. PP

      PPP4R2 268 eeddesedddeeeeeeeeee 287
                 e ++e+e+++ee+ee++ee+
  CCE26665.1 524 EGKEEKEEEKEENEEKKEEK 543
                 22222222222233332222 PP

  == domain 4  score: -18.4 bits;  conditional E-value: 1
      PPP4R2 215 fedeeekeedd.neseesaseseeiteekdesvkveekdddeeddeedtdyveeeeddesedddeeeeeee 284
                 +e++eek   + ++++e+++e+ee+ eek+e++++eek++++e++e++++ ++ e+++++e+++e++ee+e
  CCE26665.1 544 EEKKEEK---EeKKENEEKKENEEKKEEKEEKKENEEKKEEKEEKEKEKEEEKGEKEEKKEEKEEKKEEKE 611
                 1222222...1233334444444444444445555554444444444443333222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3083  (0.171956); expected 358.6 (0.02)
Passed bias filter:                     1008  (0.0562218); expected 358.6 (0.02)
Passed Vit filter:                       745  (0.0415528); expected 17.9 (0.001)
Passed Fwd filter:                       312  (0.017402); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 3.61u 0.41s 00:00:04.01 Elapsed: 00:00:00.72
# Mc/sec: 2610.47
//
Query:       CCE26666.1  [L=373]
Description: uncharacterized protein CPUR_00135 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-07   30.1   0.0      2e-06   27.9   0.0    2.0  1  SPRY      SPRY domain


Domain annotation for each model (and alignments):
>> SPRY  SPRY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.1e-10     2e-06       2      76 ..     216     290 ..     215     322 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.1e-10
                 EEEEEEET.CCTSSEEEEEEEETTSSSSSTSSSTSSTTEEEEETETTEEE..EETESCEEEESSSSTTSEEEEEEETT CS
        SPRY   2 hyfevkiq.saeggsisvGlateqtdlsdksgegddrgswglcgdngtrt..saeqskaygkqparegdviGvalDle 76 
                  y+ev+i+    ++s+ +G++  +++  + +  g+ rgs+g++gd+g+++      +k+ ++  ++ g++ Gv++ ++
  CCE26666.1 216 IYYEVRILaDSRNTSLAIGFTALPYP--SFRLPGWHRGSMGVHGDDGRKYinDRWGGKDFTH-EFKAGETLGVGMTFV 290
                 6*******99****************..77888******************77777888888.*********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2916.94
//
Query:       CCE26667.1  [L=784]
Description: related to Ca2+/H+-exchanging protein, vacuolar [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-41  142.0  40.1    3.9e-22   78.8  20.0    2.2  2  Na_Ca_ex     Sodium/calcium exchanger protein
  ------ inclusion threshold ------
      0.025   14.2   9.7       0.35   10.5   4.1    2.5  2  SR-25        Nuclear RNA-splicing-associated protein
      0.095   12.2   0.4       0.25   10.8   0.4    1.6  1  DUF3087      Protein of unknown function (DUF3087)
       0.84    9.7   3.9        2.4    8.3   3.9    1.7  1  DDHD         DDHD domain
        1.1    7.2  15.2       0.23    9.5   7.4    2.2  2  AF-4         AF-4 proto-oncoprotein


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4  12.2   9.1e-23   3.3e-19       4     150 ..     145     299 ..     142     300 .. 0.94
   2 !   78.8  20.0   1.1e-25   3.9e-22       2     150 ..     628     771 ..     627     772 .. 0.89

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 9.1e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCHH CS
    Na_Ca_ex   4 vlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkld 102
                 ++f++  +++++la +l+ ++e++a      g  lG +l+ +++++ Eli+ iia++++e++++ +++lGs+++nlll++G+ +++g+  +++e+ +++
  CCE26667.1 145 IVFAMNCIAVVPLAGLLSHATESVA---SKMGDSLGALLNVTFGNAVELIIFIIALVKNEIRIVQASLLGSILANLLLILGMGFFLGG-LRYREQ-IYN 238
                 789**********************...6778899*****************************************************.677777.466 PP

                 HHHHHHHHHHHHHHHHHTCHHHHH.............HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 103 lgllllvallllllvlllllplfv.............pgrltvleglvllllYalylvlsl 150
                   ++++ a+ll+l+v+ l+lp+++             + ++++ ++++lll+Y+lyl ++l
  CCE26667.1 239 STVTQMSACLLSLSVVSLVLPTAFhasfkdsaradaqSLKISRGTSVILLLVYILYLMFQL 299
                 669*******************99***********************************98 PP

  == domain 2  score: 78.8 bits;  conditional E-value: 1.1e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECC CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslk 100
                 +++l+++s++l++v+a+flv+s+  +++s g+ + ++Gl++l++++++ E+++++++a+++++dlaig ++Gs i++ l+v +l++++g+   d+ ++ 
  CCE26667.1 628 SIILLLASTALVAVCAEFLVDSIKDVTSSSGLGEVFIGLIILPIVGNAAEHVTAVTVAMKNKMDLAIGVAVGSSIQIALFVTPLVVILGW-IMDK-QMS 724
                 6899************************************************************************************99.6665.568 PP

                 HHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 101 ldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvlsl 150
                 l + l+ +v+l+++ +v+  +l+l  +gr ++leg++l+++Y++++v+++
  CCE26667.1 725 LYFTLFETVCLFVSTFVVN-FLVL--DGRSNYLEGALLCAVYVIIAVVAF 771
                 8886666655555555555.4444..5********************987 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.1   9.7e-05      0.35      68     100 ..     328     360 ..     305     380 .. 0.63
   2 ?    6.3   0.2    0.0018       6.6      92     121 ..     432     463 ..     397     509 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.7e-05
       SR-25  68 sssssssssssssssssssddrkkrgkkkdkkk 100
                 ++ssss s+sssss s +sd+ + +  +k kk 
  CCE26667.1 328 DTSSSSDSESSSSSDSDASDQSRDTIGRKVKKV 360
                 456666666666665655555444444444443 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0018
       SR-25  92 rgkkkdkkkkkkkkk...kkkkkekkkakekak 121
                  g+ ++ ++++++++   +++  ekk a++ a+
  CCE26667.1 432 GGRYRKYRRHRRSRRrhrRRRHEEKKNAQR-AT 463
                 333333222222221111222222222222.22 PP

>> DUF3087  Protein of unknown function (DUF3087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4     7e-05      0.25      11      78 ..     232     307 ..     230     309 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7e-05
     DUF3087  11 Yrkklnrviv....alvallavlsllfstllialfgeeevs...nfhlnl.lGvvlalvltaailrklktkpfmae 78 
                 Yr+++ +++v    a++++l v+sl++ t++ a f+++  +   ++++   + v+l lv ++ ++ +lk++++m+e
  CCE26667.1 232 YREQIYNSTVtqmsACLLSLSVVSLVLPTAFHASFKDSARAdaqSLKISRgTSVILLLVYILYLMFQLKSHAYMYE 307
                 6666555444222278899****************97655555566665425788889999999999*******98 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.9   0.00067       2.4     138     203 ..     423     500 ..     305     505 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00067
        DDHD 138 e...............rasesskasqeskaaesstasssaksskaeekvelekvralnwwgRiDYaLqegaleaeylsava 203
                                 r   ++ ++++++++++++++++++ ++ + +++++  +a ++ +R+D+aL+++ +++   +ava
  CCE26667.1 423 DttddeeerggryrkyR--RHRRSRRRHRRRRHEEKKNAQRATEGTGNDDVNPAGASHNVRRVDFALPPQ-TDHAQSPAVA 500
                 02222222222222211..112222222223333333333334445578888899999999*******88.4554556665 PP

>> AF-4  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.4   6.3e-05      0.23     468     494 ..     325     351 ..     300     362 .. 0.74
   2 ?    2.3   0.9      0.01        36     166     276 ..     439     558 ..     365     564 .. 0.46

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 6.3e-05
        AF-4 468 ssaeSeSsSeSeSSSeSDSesEssssd 494
                    + +SsS+SeSSS SDS++ + s d
  CCE26667.1 325 AWLDTSSSSDSESSSSSDSDASDQSRD 351
                 44677899************6655555 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.01
        AF-4 166 reksessseekkerredleesasdsssakeeelspllsslsspvkpLsllhssqhansktqssskahs..............keldqskspkdseakse 250
                 r++++s+ +++++r+e++++ ++ ++ + +++++p+  s   +v+ + +  + q  + ++    +a s               e  + k p   +++s 
  CCE26667.1 439 RRHRRSRRRHRRRRHEEKKNAQRATEGTGNDDVNPAGAS--HNVRRVDFALPPQTDHAQSPAVASA-SatatatatpggetnTEAGPPKRPLAATFRSI 534
                 111112222212222222222222222333444444433..2222211111111111111100000.00111223333321134444444444444444 PP

        AF-4 251 eketssplastslltktsqlssqtFP 276
                 + +t  +++++ l++k++q++++t P
  CCE26667.1 535 SVKT--LAPAVFLAQKPPQPPVPTTP 558
                 4444..66666677777888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1349  (0.0752412); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.40
# Mc/sec: 5812.74
//
Query:       CCE26668.1  [L=1111]
Description: related to ser/thr protein kinase KIN4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-62  211.3   0.0    2.5e-62  210.7   0.0    1.3  1  Pkinase        Protein kinase domain
      3e-34  118.5   0.0    8.4e-29  100.6   0.0    2.2  2  Pkinase_Tyr    Protein tyrosine kinase
    1.3e-05   24.6   0.0      0.027   13.8   0.0    2.2  2  Kinase-like    Kinase-like
     0.0016   18.4   0.0     0.0031   17.5   0.0    1.4  1  APH            Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.025   13.5   0.0      0.039   12.9   0.0    1.2  1  Haspin_kinase  Haspin like kinase domain
       0.24   10.7   0.4       0.46    9.8   0.0    1.5  2  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.7   0.0   8.2e-66   2.5e-62       4     264 .]     271     562 ..     268     562 .. 0.94

  Alignments for each domain:
  == domain 1  score: 210.7 bits;  conditional E-value: 8.2e-66
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeea 100
                  +++GeG+fGkV  + +++++ +vA+K ik++    +     k++rE++il+ ++hpnivrl++++e+++++ ++ley++ggel+d++ +++ l++  a
  CCE26668.1 271 GNTIGEGEFGKVKLGWKQDSSVQVAIKLIKRDTVGGNPSrlGKIRREVTILRGVHHPNIVRLIDMIETDRYIGIILEYASGGELFDYILNHRYLKDGPA 369
                 679*****************************99987777899******************************************************** PP

                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.................................BCTTTSCGGGS-H CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.................................ltsfvgtseYlAP 166
                 +++++q+++g+ ylH+kgi+HrDlK eN+L+d+++++ itDFG+a+ ++ +++                                 +++ +g++ Y AP
  CCE26668.1 370 RRLFSQLVSGVGYLHKKGIVHRDLKLENLLLDRNRNIIITDFGFANTFDPNEElmeeeelnltdretvkrmgldrikpngmrkgdlMQTSCGSPCYAAP 468
                 ***************************************************99********************************************** PP

                 HHH.TTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 167 Evl.keney.skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpy 263
                 E++ +++ y ++kvDvWs+Gvily +l+g  pf ++  +     e d++  ++k +  ++  l  ++ + ++a+dll+++l  +p+kR    e+ +h++
  CCE26668.1 469 ELVvSDSLYtGRKVDVWSCGVILYAMLAGYLPFDDDPAN----PEGDNINLLYKYI--VSTPLTFPEYVTPHARDLLRRILVPNPRKRADLFEVARHSW 561
                 ***9666666************************44444....4777755566654..567889999******************************** PP

                 G CS
     Pkinase 264 l 264
                 l
  CCE26668.1 562 L 562
                 7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   2.8e-32   8.4e-29       3     164 ..     270     428 ..     268     446 .. 0.91
   2 !   15.8   0.0   2.2e-06    0.0064     168     255 ..     462     556 ..     440     559 .. 0.79

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 2.8e-32
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS...SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeea...teeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  lg+++GeG+fGkV  g  +    +++v+Va+K +k+++   + ++  ++ +e++i++ ++hpniv+l+ ++  ++ + i++ey++gG+L +++ ++  
   CCE26668.1 270 LGNTIGEGEFGKVKLGWKQ----DSSVQVAIKLIKRDTvggNPSRLGKIRREVTILRGVHHPNIVRLIDMIETDRYIGIILEYASGGELFDYILNH-- 361
                  6899***********9877....999********98662225566889999********************************************9.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTS CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkee 164
                  + l+     ++  q+ +G+ yL++k +vHrdl   N Ll++n+ + i+DfG a++   ++e  ++ee
   CCE26668.1 362 RYLKDGPARRLFSQLVSGVGYLHKKGIVHRDLKLENLLLDRNRNIIITDFGFANTFDPNEELMEEEE 428
                  9999999999********************************************9977777665554 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.2e-06
                  GGGGS-HHHHHHSE.EE.HHHHHHHHHHHHHHHHTTSSGT......TTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 168 pvkWmapEslkekk.ft.sksDvWsfGvllwEiftlgesp......ypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfsel 255
                  +  + apE + + + +t  k DvWs Gv+l+ ++  g  p       p+ +n ++l k+  ++ l+ pe+++++  +l+++ +  +p++R+++ e+
   CCE26668.1 462 SPCYAAPELVVSDSlYTgRKVDVWSCGVILYAMLA-GYLPfdddpaNPEGDNINLLYKYIVSTPLTFPEYVTPHARDLLRRILVPNPRKRADLFEV 556
                  45799***876655355379*************99.99994444444555666688888889999*************************988766 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     9e-06     0.027     148     189 ..     372     412 ..     354     439 .. 0.89
   2 !    8.9   0.0   0.00029      0.86     205     255 ..     463     506 ..     420     550 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9e-06
  Kinase-like 148 llTlqlirlaanLqakglvhgkftvdnllldekgglmlggft 189
                  l   ql+  + +L++kg+vh +++ +nllld++  +++++f+
   CCE26668.1 372 LF-SQLVSGVGYLHKKGIVHRDLKLENLLLDRNRNIIITDFG 412
                  44.789999*******************************96 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00029
  Kinase-like 205 kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlate 255
                    +a pEl+ s   yt         k+d+W  G+  y + + +lP++ +  
   CCE26668.1 463 PCYAAPELVVSDSLYT-------GRKVDVWSCGVILYAMLAGYLPFDDDPA 506
                  5566677777644444.......4689*******************98743 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     1e-06    0.0031     162     205 ..     378     423 ..     292     424 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1e-06
                 S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHH CS
         APH 162 g....elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDl 205
                 +      +++++H+Dl++ Nll+d + + +  + Df++a + +p  +l
  CCE26668.1 378 SgvgyLHKKGIVHRDLKLENLLLDRNRNII--ITDFGFANTFDPNEEL 423
                 346667789***************555565..88*****988886665 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.3e-05     0.039     230     255 ..     390     415 ..     369     427 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsR 255
                    HRdL+l+n L+d+n n+++ d+  + 
     CCE26668.1 390 HRDLKLENLLLDRNRNIIITDFGFAN 415
                    *********************98775 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00015      0.46     113     166 ..     362     411 ..     345     437 .. 0.80
   2 ?   -4.1   0.3       2.8   8.3e+03       9      38 ..    1054    1083 ..    1050    1085 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00015
         Kdo 113 aelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 + l++   r+l+ ++   +  lh+ g+ H+dl   n+ll+ +     +i++ D+
  CCE26668.1 362 RYLKDGPARRLFSQLVSGVGYLHKKGIVHRDLKLENLLLDRNR----NIIITDF 411
                 555566667788888888999*******************998....7777777 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.8
         Kdo    9 kvveeaegRrttwfvvaekvnaalrkyyrg 38  
                  ++ ++ e+R+++    +++++a+++  yrg
  CCE26668.1 1054 RATSSRETRGVLQKNHKRFTDAYDQDEYRG 1083
                  667788888888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 7472.55
//
Query:       CCE26669.1  [L=58]
Description: uncharacterized protein CPUR_00138 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 471.45
//
Query:       CCE26670.1  [L=31]
Description: uncharacterized protein CPUR_00139 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        91  (0.00507558); expected 358.6 (0.02)
Passed bias filter:                       61  (0.00340231); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 259.68
//
Query:       CCE26671.1  [L=522]
Description: uncharacterized protein CPUR_00140 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.13   11.7  15.7       0.22   11.0  15.7    1.3  1  SpoIIP           Stage II sporulation protein P (SpoIIP)
       0.15   10.9   6.4        0.2   10.4   6.4    1.2  1  Otopetrin        Otopetrin
        1.2    7.3  12.5        1.7    6.8  12.5    1.1  1  CDC45            CDC45-like protein
        1.2    7.9  14.6        1.7    7.4  14.6    1.1  1  NARP1            NMDA receptor-regulated protein 1
        1.9    8.2   6.9        3.1    7.5   6.9    1.3  1  EMC3_TMCO1       Integral membrane protein EMC3/TMCO1-like
        2.5    7.4  16.1        4.5    6.5  16.1    1.3  1  DUF4407          Domain of unknown function (DUF4407)
        3.2    6.1  13.6        4.3    5.7  13.6    1.1  1  Peptidase_S64    Peptidase family S64
        3.9    5.9  14.1          5    5.6  14.1    1.3  1  Macoilin         Macoilin family
        4.8    6.5  25.0        9.2    5.6  25.0    1.4  1  CobT             Cobalamin biosynthesis protein CobT
        5.2    5.9  24.2        9.2    5.1  24.2    1.3  1  eIF-3_zeta       Eukaryotic translation initiation factor 3 s
        5.5    7.1  15.0         14    5.9  15.0    1.6  1  CPSF100_C        Cleavage and polyadenylation factor 2 C-term
        8.2    6.4  26.2         18    5.3  26.2    1.5  1  TERB2            Telomere-associated protein TERB2


Domain annotation for each model (and alignments):
>> SpoIIP  Stage II sporulation protein P (SpoIIP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  15.7   0.00015      0.22      12      71 ..      28      99 ..      17     150 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
      SpoIIP 12 pllklepteeapaeesekeekekeeeeeeekeeeeeeeikkeekeeekekeedseeeee.............k 71
                +++++ + ++a +++++++++++++++++++++++++++++++++++++++++++++++             +
  CCE26671.1 28 SIVHQ-QHHQAAHQQHQAHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQHQQQhhglppppqhpqsT 99
                33322.2222222222222222222222222222222222222222222222222222134455555555550 PP

>> Otopetrin  Otopetrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   6.4   0.00014       0.2      90     152 ..      29      84 ..      22     187 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
   Otopetrin  90 lvkeskkeitaylekeesaeeassssssaridalrkakkvltkstakekiisarleqrtaste 152
                 +v+ ++++  ++++++++++++++++++++++++++++       +++++++++ +q++++++
  CCE26671.1  29 IVHQQHHQAAHQQHQAHQQQQQQQQQQQQQQQQQQQQQ-------QQQQQQQQHQQQQQQHQQ 84 
                 44444444333333332222222222222222222221.......111111122222221111 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  12.5    0.0012       1.7     144     196 ..      37     101 ..       8     143 .. 0.36

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0012
       CDC45 144 dddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrse...............p 196
                   +++++ ++++++++++++++++++++++++++++++++++++++++   +               p
  CCE26671.1  37 AAHQQHQAHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQHQQ---QhhglppppqhpqstyP 101
                 111111111111111111111111111111111111111111111111...12345555544433342 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  14.6    0.0012       1.7     397     453 ..      34      84 ..      15     126 .. 0.40

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0012
                 -HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......--------- CS
       NARP1 397 keeaksaelseaerkklrkkakkaekkaekeeaekaekekekkaaekkakkedeeak 453
                 +++a      +++++++++++++++++++++++++++++++++++++++++++++++
  CCE26671.1  34 HHQA------AHQQHQAHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQHQQ 84 
                 1111......12222222222222222222222211111111111111111111111 PP

>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.9    0.0021       3.1      50      85 ..      45      80 ..      27     145 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0021
  EMC3_TMCO1 50 rekelqkrarelqkngdklklkklekrqeelmedqs 85
                 +++ q+++++ q++++++++++ +++q++ +++q+
  CCE26671.1 45 HQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQ 80
                222222222222222222222222222222222222 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  16.1     0.003       4.5     190     237 ..      37      83 ..      12      99 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.003
     DUF4407 190 aqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaa 237
                 a++++ qa  ++ +++ +++++++++++++++ ++++++ ++++q+++
  CCE26671.1  37 AAHQQHQAHQQQQQQQ-QQQQQQQQQQQQQQQQQQQQQQHQQQQQQHQ 83 
                 2222222222221111.1222222222222222222222222222222 PP

>> Peptidase_S64  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  13.6    0.0029       4.3      15      71 ..      35     108 ..      16     187 .. 0.49

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0029
  Peptidase_S64  15 eskekkslepsksnskskesgesssslkelrpifesekaseeessaeedsstelae.......................s 71 
                    +++++++++  ++++++++++++++++++++    ++++++++++++++++++  +                       +
     CCE26671.1  35 HQAAHQQHQAHQQQQQQQQQQQQQQQQQQQQ----QQQQQQQQQHQQQQQQHQ--QqhhglppppqhpqstypsthplpH 108
                    1111111111111111111111111111111....111111111111111111..1123444555555544444444440 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  14.1    0.0033         5     229     294 ..      25      88 ..       2     267 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0033
    Macoilin 229 vdpvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymenksk 294
                  +++++++++h+ ++++ + +  + +++++  +++++++++++++++++++++++q++++++++  
  CCE26671.1  25 RPSSIVHQQHHQAAHQQHQAHQQQQQQQQQ--QQQQQQQQQQQQQQQQQQQQHQQQQQQHQQQHHG 88 
                 233333444444333322222111111111..1111111111111222222222222222222222 PP

>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  25.0    0.0062       9.2     218     269 ..      33      84 ..      18     102 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0062
        CobT 218 eeedeeeeeeeseeeeeegedddkeeqeeaaseeeeeededeesketeaaea 269
                 +  +++ +++++++++++++++++++q++++++++++++++++++++++ ++
  CCE26671.1  33 QHHQAAHQQHQAHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQHQQ 84 
                 3333333333333332222222222222222222222222222222222222 PP

>> eIF-3_zeta  Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  24.2    0.0062       9.2      83     139 ..      32      83 ..       8     105 .. 0.39

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0062
                 XX..XX.XXX..XXXXXXXXXXX.XXXXXXXXXX....................... CS
  eIF-3_zeta  83 nkkakkkkkeakrqrrgrgeekkerqqqqalnkkqgeeekeerskkkkkkkkgrrkg 139
                 ++++++ ++++++ +++++++++++qqqq+ +++q+++++++++++++++++    +
  CCE26671.1  32 QQHHQAAHQQHQA-HQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQH----Q 83 
                 2222221111111.11111111111111111111111111111111111111....1 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  15.0    0.0091        14      36      82 ..      39      84 ..      16     108 .. 0.39

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0091
   CPSF100_C 36 eaeeeekeeeeeeeeeeeeeeeaskkqklaeksekeaseeeseekke 82
                ++++++++++++++++++++++++++q++ +++++++++++++++++
  CCE26671.1 39 HQQHQAHQQQQQQQQQQQQQQQQQQQQQQ-QQQQQQQHQQQQQQHQQ 84
                12112222222222111111111111111.12222222222222222 PP

>> TERB2  Telomere-associated protein TERB2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  26.2     0.012        18     104     161 ..      30      85 ..      13     113 .. 0.40

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.012
       TERB2 104 iweqdnqslveqssevhsaeepeiakdslleekeeqasklaksaeksatstsksekql 161
                 + +q++q+  +q++  h +++++++++++++++++q++++++++++++++ + +++q+
  CCE26671.1  30 VHQQHHQAAHQQHQ-AHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQ-QHQQQ 85 
                 33333333333333.3333333333333333333333333222222222222.22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      5349  (0.298343); expected 358.6 (0.02)
Passed bias filter:                     1614  (0.0900218); expected 358.6 (0.02)
Passed Vit filter:                       763  (0.0425568); expected 17.9 (0.001)
Passed Fwd filter:                       146  (0.00814323); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.89u 0.41s 00:00:02.29 Elapsed: 00:00:00.56
# Mc/sec: 2821.57
//
Query:       CCE26672.1  [L=339]
Description: uncharacterized protein CPUR_00141 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2516.83
//
Query:       CCE26673.1  [L=375]
Description: probable casein kinase-1 hhp1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-26   92.6   0.0    3.2e-26   92.3   0.0    1.1  1  Pkinase         Protein kinase domain
    7.2e-14   51.7   0.0    9.8e-14   51.3   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    4.8e-09   35.5   0.0    6.6e-09   35.0   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
    0.00019   21.4   0.0     0.0015   18.5   0.0    2.1  2  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   7.1e-30   3.2e-26       1     213 [.      12     231 ..      12     263 .. 0.85

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 7.1e-30
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHH.HHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladlle.rkgslse 97 
                 y+  +k+G+GsfG +y +++  +g+++A+K  +++ +      ++  E ++ k+l     + ++++f +  d+  +vl+++   +l+dl +  ++++s 
  CCE26673.1  12 YRIGRKIGSGSFGDIYLGTNIISGEEIAIKLESVKAKHP----QLEYEARVYKSLAGGVGIPFVRWFGTeCDYNAMVLDLLGP-SLEDLFNfCNRKFSL 105
                 67899*************************877766665....4569*********8888888888887256667****9984.577777765678*** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE..TTTE.EEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLid..ekge.lKitDFGlakelesssk........ltsfvgtseYlAPEvlkeneyskkvDvWslGv 185
                 +++  +a q+++ +ey+H+k++iHrD+Kp+N+L+   ++g+ + ++DFGlak+++  ++         ++ +gt +Y +     + e s+  D+ slG 
  CCE26673.1 106 KTVLLLADQLISRIEYIHAKSFIHRDIKPDNFLMGigKRGNqVNVIDFGLAKKYRDPKThfhipyreNKNLTGTARYASINTHLGVEQSRRDDMESLGY 204
                 *********************************986555557**************9999******99***********999889999*********** PP

                 HHHHHHHSS-STTTSSHHHHHHHHHHTH CS
     Pkinase 186 ilyelltgkppfsgekgkekvekeldql 213
                 +++ +  g+ p++g k  + +++++d++
  CCE26673.1 205 VMLYFCRGSLPWQGLKAAT-KKQKYDRI 231
                 *************766554.44444442 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   2.2e-17   9.8e-14       3     227 ..      14     239 ..      12     251 .. 0.79

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 2.2e-17
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                  +g+k+G+G+fG+++ gt       + +++a+K  + +a++    +l  ea++ k+l     i  +  + t+ +   +v++++   +L++  +   ++k
   CCE26673.1  14 IGRKIGSGSFGDIYLGTNI----ISGEEIAIKLESVKAKHP---QLEYEARVYKSLaGGVGIPFVRWFGTECDYNAMVLDLLG-PSLEDLFNFC-NRK 102
                  789**************99....78899****986666665...788899999999544445444444456678899999985.4677777776.788 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEE.....EETTSSTSGGGGS-HHHHHHSEEEHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekddey.....vkkeeaklpvkWmapEslkekkftsksDvW 189
                  ++lk++l +a q+ + +ey+++k+++Hrd+   N L+     +++v + DfGLa++  + ++      +++++ +   ++ ++ +    + + + D+ 
   CCE26673.1 103 FSLKTVLLLADQLISRIEYIHAKSFIHRDIKPDNFLMGIgkrGNQVNVIDFGLAKKYRDPKTHfhipyRENKNLTGTARYASINTHLGVEQSRRDDME 200
                  ************************************97433388***********99555543555558888899999******************** PP

                  HHHHHHHHHHTTSSGTTTTSHHHHHHHHH..HTTEES-BB CS
  Pkinase_Tyr 190 sfGvllwEiftlgespypglkneevlekl..kegkrlekp 227
                  s G ++   +  g+ p++glk+++  +k+    +k++++p
   CCE26673.1 201 SLGYVMLYFCR-GSLPWQGLKAATKKQKYdrIMEKKMTTP 239
                  ***99986555.*****99987776555522223344444 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.5e-12   6.6e-09     323     408 .]     123     210 ..     104     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.5e-12
  Pkinase_fungal 323 flkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses.....garertGTleFmaievlkgeeHsyrhDLESffyvllwic 408
                     +  + ++HrDi  +N l+     +++++  +iD+ lak++ d++++      ++++ tGT+ + +i+   g e s r+D+ES+ yv+l+ c
      CCE26673.1 123 H-AKSFIHRDIKPDNFLMG--IGKRGNQVNVIDFGLAKKYRDPKTHFhipyrENKNLTGTARYASINTHLGVEQSRRDDMESLGYVMLYFC 210
                     4.6789*************..7788999*************988887666666699*********************************98 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.15   6.5e+02      32      67 ..      47      81 ..      35      91 .. 0.80
   2 !   18.5   0.0   3.2e-07    0.0015     165     197 ..     124     157 ..     101     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.15
                S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEET CS
         APH 32 raaeeirrevallrlLakagvpvPevlagdtddeei 67
                  +++++ e+++++ La+  v +P v +++t ++ +
  CCE26673.1 47 AKHPQLEYEARVYKSLAGG-VGIPFVRWFGTECDYN 81
                47899***********966.5568899999998866 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 3.2e-07
                 -EEEE-SS-SGGGEEEC....TTEEEEE---TT-E CS
         APH 165 ptvllHgDlhpgNllvd..pddgrvtGviDfedag 197
                 +++++H+D++p+N+l+   +++++v  viDf++a+
  CCE26673.1 124 AKSFIHRDIKPDNFLMGigKRGNQV-NVIDFGLAK 157
                 689***************9888888.9*****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2629.75
//
Query:       CCE26674.1  [L=540]
Description: uncharacterized protein CPUR_00143 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-05   22.4   0.0    0.00014   21.5   0.0    1.5  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   7.7e-09   0.00014      31     202 ..      62     410 ..      36     452 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.7e-09
                    T......SEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCH........................................................ CS
                    x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................ RF
  Exo_endo_phos  31 a......DvlgLQEvdddelsriplllalggflgasstsp........................................................ 64 
                    a       vl LQEv   ++s+i           ++ +++                                                        
     CCE26674.1  62 AtglpdvVVLSLQEVAPLSQSFI---------GEYFLNPYysrfdeavnlaaqrfqhgprkgaggaakaasepigsgisgldadsegrrrqqdepe 148
                    13333236888***666555555.........3333333333366677788888888888888888999999999999999999999999999999 PP

                    ..................................ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE........... CS
                    ..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF
  Exo_endo_phos  65 ..................................tgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni........... 115
                                                      ++g+   g +gav  r   +     t +     vaa+    ++     + +           
     CCE26674.1 149 kvytlikahnvgytaillfakdpqhirnlqhaavGFGTAEMGSKGAVGLRALYDITGDGTQSTELTFVAAHLAAMEYNLPQRNANwaaimsgltfe 244
                    999999999999999999999999999999999999999999999999999996664444444444444444333333333333389********* PP

                    .................................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTHHS CS
                    .................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 116 .................................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapapvg 178
                                                      ++  hd  r++q + +++  ++    ++ +++vaGD+N+                       
     CCE26674.1 245 npvvthderrtpetptsadldddmdendgesqeQRGLLHDTHRREQPQVQQRLHDISVFKPSSHLFVAGDLNY----------------------- 317
                    *************************************************************************....................... PP

                    SCESCETTTTTTTTTTTEB-B........................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxx........................................................................... RF
  Exo_endo_phos 179 lyllgggptptyvtraggsrl........................................................................... 199
                                       r+                                                                           
     CCE26674.1 318 -------------------RIstsspppnatfpsedpssenyyptflpqdqltherragrtmhglseasvqfpptykydvlpkenpdaddehedqv 394
                    ...................44444444444444444444444444444444455555555555555555555555555555555555555555444 PP

                    .............EEE CS
                    .............xxx RF
  Exo_endo_phos 200 .............Dri 202
                                 Dr+
     CCE26674.1 395 pwefashrwpswtDRV 410
                    4444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3953.23
//
Query:       CCE26675.1  [L=403]
Description: related to cAMP-dependent protein kinase catalytic subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-62  210.5   0.0    5.5e-62  209.5   0.0    1.5  1  Pkinase         Protein kinase domain
    1.2e-31  110.0   0.0    1.5e-31  109.6   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    5.1e-05   22.7   0.0    6.4e-05   22.4   0.0    1.1  1  Kinase-like     Kinase-like
     0.0068   15.4   0.0     0.0089   15.0   0.0    1.1  1  Haspin_kinase   Haspin like kinase domain
     0.0099   15.8   0.1      0.072   13.0   0.0    2.0  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.025   13.6   0.0      0.039   13.0   0.0    1.1  1  Seadorna_VP7    Seadornavirus VP7
      0.029   13.1   0.0      0.044   12.6   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
       0.18   11.7   0.0       0.36   10.8   0.0    1.4  1  DUF3717         Protein of unknown function (DUF3717)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.5   0.0   2.5e-65   5.5e-62       2     264 .]      69     345 ..      68     345 .. 0.90

  Alignments for each domain:
  == domain 1  score: 209.5 bits;  conditional E-value: 2.5e-65
                 EEEEEEEEESSEEEEEEE............ETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHH CS
     Pkinase   2 ekleklGeGsfGkVykav............eketgkivAvKkikkekakkkke.kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggela 86 
                 +++++lG+G+f++V  ++            ++ + + +A+K+++k +    k+ ++v++E +il+ +  hp+i  l+ +f+++d ly++l+yv+ggel+
  CCE26675.1  69 KVVRTLGTGTFARVCLVRpsnapdipleqeNRGNAEVYALKILRKTEVIRLKQvDHVRHERSILADVAgHPFITSLLASFSDHDCLYMLLDYVPGGELF 167
                 6678888888888866653333333333226678899***********999999********************************************* PP

                 HHHHHHSS--HHHHHHHHHHHHHHHHHHHHTT..EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHHTTSCBSHHHH CS
     Pkinase  87 dllerkgslseeeakkiakqilegleylHskg..iiHrDlKpeNiLidekgelKitDFGlakelesssk....ltsfvgtseYlAPEvlkeneyskkvD 179
                 ++l++ + ++e++a ++a++i+  leylH+++  + +rDlKpeN+L+d++g++K++DFG+ak+l  + +    + + +gt+eYlAPEv+++++++++vD
  CCE26675.1 168 SYLRKLRRFEESTACFYAAEIVLVLEYLHEHQggVAYRDLKPENLLLDKDGHIKLVDFGFAKRLGYKDDrpveTYTLCGTPEYLAPEVIQNKGHTTAVD 266
                 ****9999*********************77666******************************99998999999************************ PP

                 HHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.....HHHHHTSGGG CS
     Pkinase 180 vWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.....aeellqhpyl 264
                 +W+lG+++ye+ltg ppf++++  e +++++ +            +++p++  ise+akd++++ +++d+++Rl+     a+ + +hp++
  CCE26675.1 267 WWALGILIYEFLTGYPPFWHQNPIEIYKQIIGK-----------PLTFPQDPPISEHAKDIVRSFCTVDRSRRLGnlsggASRVRAHPFF 345
                 *******************88888877666666...........6899**************************9999999999999997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.0   6.8e-35   1.5e-31       2     249 ..      69     328 ..      68     330 .. 0.89

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 6.8e-35
                  EEEEEEEEESSEEEEEEEEET........TTTSSEEEEEEEEESTT..SSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkg........ekekkevkVavKtlkee..ateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdL 88 
                  ++ ++lG G+f++V+  + ++        e++ + +  a+K+l+++   + ++ +++ +e +i+ ++  hp i +ll+  ++++ l+++++yv+gG+L
   CCE26675.1  69 KVVRTLGTGTFARVCLVRPSNapdipleqENRGNAEVYALKILRKTevIRLKQVDHVRHERSILADVaGHPFITSLLASFSDHDCLYMLLDYVPGGEL 166
                  56799**********999988899999844445555569****6541156677889999********9****************************** PP

                  HHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEEETTEEEE-STTTHEET.TTSSEEEETTSSTSGGGGS-HHHHHHSEEE CS
  Pkinase_Tyr  89 lkfLrkkekekltlkdllsfalqvAkGmeyLeskk..lvHrdlaarNvLlsenkvvkisDfGLardi.ekddeyvkkeeaklpvkWmapEslkekkft 183
                   ++Lrk   ++++ ++ + +a+++   +eyL++++  +  rdl   N Ll+++ ++k+ DfG a+++ +kdd+ v++ +     +++apE++++k  t
   CCE26675.1 167 FSYLRKL--RRFEESTACFYAAEIVLVLEYLHEHQggVAYRDLKPENLLLDKDGHIKLVDFGFAKRLgYKDDRPVETYTLCGTPEYLAPEVIQNKGHT 262
                  ******8..9**********************9987799***************************988888889999999999************** PP

                  HHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 184 sksDvWsfGvllwEiftlgespypglkneevlekl.kegkrlekpekcpeelyelmkkcweedpeeR 249
                  ++ D W+ G+l++E +t g  p+++ ++ e+++++  +    ++   ++e+ ++++++  + d ++R
   CCE26675.1 263 TAVDWWALGILIYEFLT-GYPPFWHQNPIEIYKQIiGKPLTFPQDPPISEHAKDIVRSFCTVDRSRR 328
                  ****************9.****************955566677777788888888888777777776 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.9e-08   6.4e-05     151     255 ..     186     289 ..     164     328 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.9e-08
  Kinase-like 151 lqlirlaanLqak..glvhgkftvdnllldekgglmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwc 245
                  ++++ +  +L+++  g+   +++++nllld++g ++l +f+   r g k     e+      pE l+        ++   t ++d W+lG+ iy    
   CCE26675.1 186 AEIVLVLEYLHEHqgGVAYRDLKPENLLLDKDGHIKLVDFGFAKRLGYKDDRpVETYTLCGTPEYLAPEVI----QNKGHTTAVDWWALGILIYEFLT 279
                  5677788899764337999**********************999998887632444455667888888666....6777899************9998 PP

  Kinase-like 246 lklPltlate 255
                   + P+  + +
   CCE26675.1 280 GYPPFWHQNP 289
                  8888866665 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     4e-06    0.0089     175     255 ..     129     229 ..      90     243 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4e-06
  Haspin_kinase 175 k................pdfyseqqlflvlllkdkGtdLeev.klkswkqalsifw..qivkiL.yvaEtkfeFEHRdLhldniLvdknlnvtlid 250
                    +                + f +++ l+++l    +G+  + + kl+ +++    f+  +iv +L y+ E +     RdL+ +n L+dk +++ l+d
     CCE26675.1 129 RsiladvaghpfitsllASFSDHDCLYMLLDYVPGGELFSYLrKLRRFEESTACFYaaEIVLVLeYLHEHQGGVAYRDLKPENLLLDKDGHIKLVD 224
                    23333333333343343445555556666666667777777689************33355555567899999999******************** PP

  Haspin_kinase 251 lklsR 255
                    +  ++
     CCE26675.1 225 FGFAK 229
                    *9874 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.18   4.1e+02      33      84 ..     121     168 ..      68     186 .. 0.63
   2 !   13.0   0.0   3.2e-05     0.072     164     197 ..     198     229 ..     165     230 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.18
                 -HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH  33 aaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84 
                    ++r e  +l+ +a++++ +  +la   +  ++  l+ l+ yvpg  l  
  CCE26675.1 121 QVDHVRHERSILADVAGHPF-ITSLLA---SFSDHDCLYMLLDYVPGGELFS 168
                 33455566666666666666.555666...5555555889999999987766 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3.2e-05
                 S-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 164 lptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                  + ++  +Dl+p Nll+d  dg++  ++Df++a+
  CCE26675.1 198 HQGGVAYRDLKPENLLLD-KDGHI-KLVDFGFAK 229
                 4557889***********.66776.7*****995 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.7e-05     0.039     153     186 ..     191     224 ..     180     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
  Seadorna_VP7 153 dLmdfhsestnllhGDcnpenlmcDknGylklvD 186
                    L+ +h+ ++++ + D +penl+ Dk G +klvD
    CCE26675.1 191 VLEYLHEHQGGVAYRDLKPENLLLDKDGHIKLVD 224
                   48899*99999**********************9 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.9e-05     0.044     306     396 ..     180     266 ..     168     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
  Pkinase_fungal 306 kellealrDaIkghrsLfl.kagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga.rertGTleFmaievlkgeeHsyrhD 396
                      +++ a ++ +  ++ L++ ++g+  rD   +N+l+      ++ +  L+D+ +ak l+ ++ + ++  +  GT+e++a ev++++ H+   D
      CCE26675.1 180 TACFYA-AEIVLVLEYLHEhQGGVAYRDLKPENLLLD-----KDGHIKLVDFGFAKRLGYKDDRPVEtYTLCGTPEYLAPEVIQNKGHTTAVD 266
                     555554.3566777788862567889**********9.....788999**********98777766547899************999*98765 PP

>> DUF3717  Protein of unknown function (DUF3717)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00016      0.36      19      57 ..      86     124 ..      84     129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
     DUF3717  19 spsaddelaLcaearaLaevYalmivqresevdlesLda 57 
                 +ps+  ++ L++e r  aevYal i+++++ + l+++d+
  CCE26675.1  86 RPSNAPDIPLEQENRGNAEVYALKILRKTEVIRLKQVDH 124
                 68999999**************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2810.31
//
Query:       CCE26676.1  [L=1133]
Description: related to Mac1p interacting protein (MIC1 protein) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-48  162.8   0.0    1.6e-47  161.9   0.0    1.4  1  RabGAP-TBC  Rab-GTPase-TBC domain
    4.4e-05   23.1   0.2      0.014   15.3   0.3    3.1  2  EF-hand_6   EF-hand domain
    0.00029   20.2   2.8      0.075   12.6   0.6    3.6  4  EF-hand_1   EF hand
    0.00063   20.2   0.0       0.59   10.6   0.0    3.0  2  EF-hand_7   EF-hand domain pair
  ------ inclusion threshold ------
      0.047   13.2   0.2       0.14   11.7   0.2    1.9  1  EF-hand_5   EF hand


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.9   0.0   4.5e-51   1.6e-47       2     215 .]     270     474 ..     269     474 .. 0.91

  Alignments for each domain:
  == domain 1  score: 161.9 bits;  conditional E-value: 4.5e-51
  RabGAP-TBC   2 elRgevWklllgyepevkrlkksekkqeksekeksklekseeske.lsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevgYcqGmndivap 99 
                 +lRge+W+l +g++  +       + ++ s ++++  + + +++  +  I+kD++r++pe   f++++g + L+r+L ays+ np+vgYcq mn +va 
  CCE26676.1 270 RLRGEIWELTSGSL--Y------LRLENPSLFTDTLAKFEGQESLaIDEIEKDLNRSLPEYPGFQSEEGISRLRRVLTAYSWVNPDVGYCQAMNIVVAA 360
                 79***********4..2......333455555555555555555559************99************************************** PP

  RabGAP-TBC 100 lllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwD.lllegekf 197
                 ll ++++e +aF++++sL+ +  ++ +y++++ g+  ++kv+e l+++++p l++hl + +++l++ +++wfl l+++++pl  ++r++D +++eg+k+
  CCE26676.1 361 LL-IYMSEAQAFFLLSSLC-DRLVPGYYSTTMYGTLLDQKVFESLVERTMPILWEHLVKSDIQLSVVSLPWFLSLYINSMPLIFAFRVLDvFFVEGPKV 457
                 **.8889************.99***********************************999******************************8888***99 PP

  RabGAP-TBC 198 vllrvalailklleeell 215
                  l++v+lail+ + e+ll
  CCE26676.1 458 -LFQVGLAILRINGEDLL 474
                 .**********9988876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.015        56       2      26 ..     694     718 ..     693     721 .. 0.88
   2 !   15.3   0.3   3.9e-06     0.014       4      21 ..     733     750 ..     730     756 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.015
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 l++++k++D+dg+  ++ +E++  l
  CCE26676.1 694 LQRLYKKWDVDGNAALSLQEVVTGL 718
                 7899***********9999998665 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.9e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeE 21 
                 ++F+l+D dgdGk+d+e 
  CCE26676.1 733 YFFELYDDDGDGKVDREG 750
                 89*************985 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         2   7.1e+03      17      28 ..     631     642 ..     629     643 .. 0.76
   2 !    5.2   0.0    0.0048        17       2      27 ..     694     719 ..     693     721 .. 0.88
   3 !   12.6   0.6   2.1e-05     0.075       5      20 ..     734     749 ..     730     749 .. 0.89
   4 ?   -1.4   0.0      0.64   2.3e+03       2      13 ..     811     822 ..     810     822 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2
                 EEHHHHHHHHHH CS
   EF-hand_1  17 IdfeEfkellkk 28 
                 +d++ f+e+l++
  CCE26676.1 631 MDYDAFREFLAS 642
                 688889988876 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0048
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l+++ ++ D+Dg+  ++++E ++ l+
  CCE26676.1 694 LQRLYKKWDVDGNAALSLQEVVTGLA 719
                 678899**************999875 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 2.1e-05
                 HHHHHTTTSSSEEEHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfe 20 
                 +F+++D DgdGk+d+e
  CCE26676.1 734 FFELYDDDGDGKVDRE 749
                 7*************86 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.64
                 HHHHHHHHTTTS CS
   EF-hand_1   2 lkeiFrefDkDg 13 
                 +++ F+ +D D+
  CCE26676.1 811 IRRCFEYADPDN 822
                 7899*******7 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0044        16      36      67 ..     683     715 ..     628     719 .. 0.73
   2 !   10.6   0.0   0.00016      0.59       4      30 ..     731     757 ..     726     831 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0044
   EF-hand_7  36 gegsklsdee.lellfkefDtdkdGvisfdEFl 67 
                 g g ++ ++e l++l k++D d++  +s++E +
  CCE26676.1 683 GSGPEPAEHEfLQRLYKKWDVDGNAALSLQEVV 715
                 44444455445******************9976 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00016
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrk 30 
                 + + F+++D dgdg++d+e +lr+ ++
  CCE26676.1 731 ITYFFELYDDDGDGKVDREGILRMSEA 757
                 556799999999999999998885443 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2     4e-05      0.14       5      19 ..     735     749 ..     732     749 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4e-05
                 HHHH-SS-SSCE-HH CS
   EF-hand_5   5 FqaiDlNgDGkIske 19 
                 F+  D +gDGk+++e
  CCE26676.1 735 FELYDDDGDGKVDRE 749
                 999**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 7923.84
//
Query:       CCE26677.1  [L=267]
Description: uncharacterized protein CPUR_00146 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-16   59.2   0.0    7.7e-16   58.1   0.0    1.5  1  adh_short     short chain dehydrogenase
    1.7e-12   47.4   0.0    2.6e-12   46.8   0.0    1.2  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   8.6e-20   7.7e-16       3     189 ..       4     202 ..       2     207 .. 0.77

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 8.6e-20
                 EEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 +l++Ga++G+G  +ak++a+++++ +   + s     +  ++  +    +  +   vD+ +++  +++ve++  + ++  +++  AG   +++fs+ + 
  CCE26677.1   4 ILIVGATRGLGASLAKRYASSDITDMDpSQASTVYGTTRSDSAPDGfpDRVKWLTGVDLMKESVGDDIVERVGGDADPFAAVIITAGYFATEDFSKDTG 102
                 89*******************987655333333333333333333363333567789*******************************88888888887 PP

                 HHH...HHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-....TTBHHHH..HHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  99 eew...ervievNltgvflltravlpamlkqssGrIvnvsSvagkvpv....agvaaYs..AsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                   w   +r++ +   +++ +++ ++ a l q++ ++v vsS ag  ++    +g+  Y+  AsKaa+++  + l+ +l+++gi v +v+PG+++T+m++
  CCE26677.1 103 PHWseqQRMYTTSSIAPVFIAHRLVHAGLLQKGSKVVLVSSEAGSIGLrhekEGGGNYAhhASKAALNMVGKLLSLDLKERGIVVGIVHPGFMRTEMTR 201
                 7773225678887777777766666665569*************77651111445666555************************************98 PP

                 H CS
   adh_short 189 e 189
                  
  CCE26677.1 202 G 202
                 6 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   2.8e-16   2.6e-12       1     186 [.       8     206 ..       8     224 .. 0.79

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 2.8e-16
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE...EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH.. CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev...lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpflet.. 90 
                   Ga +g+G+ +Ak++a+   + +   +        r +++ + ++ +v     +D  +e+  +++ve+v  + + +  ++  ag+  +  ++f +   
    CCE26677.1   8 GATRGLGASLAKRYASSDITDMDPSQASTVygTTRSDSAPDGFPDRVkwlTGVDLMKESVGDDIVERVGGDADPFAAVIITAGYFAT--EDFSKDtg 102
                   7889999999999988886533333333332334444444555555566799**********************************9..66666513 PP

                   .-HHHHHHHHHHHTHHHHHHHHHHHH..HCTSCCEEEEEEEGGGTSBSTTTT......HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG CS
  adh_short_C2  91 .sreefdraldvnlyslfllakaalp..lmkeggsivnlssvgaervvpnyn......aygaaKaalealtrylAvelgpkgiRvNavspgpikTla 178
                     ++e +r+  ++  + + +a+++++  l+++g+++v +ss ++++++ + +      a +a+Kaal+ + + l  +l ++gi v  v+pg+++T++
    CCE26677.1 103 pHWSEQQRMYTTSSIAPVFIAHRLVHagLLQKGSKVVLVSSEAGSIGLRHEKegggnyAHHASKAALNMVGKLLSLDLKERGIVVGIVHPGFMRTEM 199
                   35666678888888888999999988999*************9999977665555657889************************************ PP

                   GGGSTTHH CS
  adh_short_C2 179 asgikgfd 186
                   ++g+   d
    CCE26677.1 200 TRGVGY-D 206
                   ***973.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1938.06
//
Query:       CCE26678.1  [L=132]
Description: uncharacterized protein CPUR_00147 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1007.45
//
Query:       CCE26679.1  [L=541]
Description: uncharacterized protein CPUR_00148 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-48  165.0   0.8    1.5e-48  165.0   0.8    2.7  3  Pal1        Pal1 cell morphology protein
  ------ inclusion threshold ------
       0.78    9.4  16.2       0.02   14.6   9.1    1.8  2  CAF-1_p150  Chromatin assembly factor 1 complex p150 subunit,
        2.1    8.7   3.5        3.9    7.8   3.5    1.3  1  Phage_Gp23  Protein gp23 (Bacteriophage A118)


Domain annotation for each model (and alignments):
>> Pal1  Pal1 cell morphology protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.0     0.089   5.3e+02      26      95 ..     161     227 ..     153     239 .. 0.62
   2 !  165.0   0.8   2.6e-52   1.5e-48       1     137 [.     242     375 ..     242     376 .. 0.94
   3 ?   -2.3   0.1       1.2     7e+03      93     124 ..     416     445 ..     378     449 .. 0.47

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.089
        Pal1  26 tphrNknskaaPvlAfpkdgannslggagklnkksaldevfGredeeddkdlaklsakakkkessetkaa 95 
                 +p rN +s +    A p    ++++  a++l+ +++ + +   +++++ ++  +  ++++++++++   a
  CCE26679.1 161 RPRRNSESSVMDFSALPITPEEMKMIEAKRLRDRQREKAAREAREAREPRESRESRESRETRDKER---A 227
                 588999999999999999999999999877777766666655555555444333222222222222...2 PP

  == domain 2  score: 165.0 bits;  conditional E-value: 2.6e-52
        Pal1   1 DtiDkLDvtglf.gglfHHdGPfDAvtphrNknskaaPvlAfpkdgannslggagklnkksaldevfGredeeddkdlaklsakakkkessetkaakks 98 
                 D iD+LD+t+++ +glfHHdGPfDA++phrN++s++aP++Afpkd+ nnslggag+ln+++++++++G+ ++e+++d   +++  k+k+  +   a +s
  CCE26679.1 242 DLIDQLDATSIYgTGLFHHDGPFDALNPHRNRSSRRAPMQAFPKDSLNNSLGGAGPLNRNPDHAQFMGNGTDEAFRD---FATGGKNKNGYN-YPAGPS 336
                 89**********99***************************************************************...677777666655.577888 PP

        Pal1  99 skevtafdsktkaelvhGeetaGLGssTFldGapasraa 137
                 ++e + fd+ ++ ++vhG+e++GLG+sTFl+G+pa++a+
  CCE26679.1 337 AAEPAIFDPISRGDIVHGDESYGLGTSTFLEGTPAAQAT 375
                 999********************************9986 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.2
        Pal1  93 kaakksskevtafdsktkaelvhGeetaGLGs 124
                  + + +++e ++ +sk   +++ G++  GLGs
  CCE26679.1 416 PSGRMTNPEGINTHSKRSPDPMPGTS--GLGS 445
                 34444555566666666666666644..4444 PP

>> CAF-1_p150  Chromatin assembly factor 1 complex p150 subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   9.1   3.3e-06      0.02      44      98 ..     187     242 ..     162     250 .. 0.83
   2 ?   -2.4   0.6      0.55   3.3e+03      19      48 ..     380     409 ..     372     414 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.3e-06
  CAF-1_p150  44 ekkeekerakeearrkkeeekekke.kerrekkekdekekaeklrlkeekrkekle 98 
                 e+k  ++r +e a r+ +e +e +e +e re +e  +ke+a k r k  +  ++++
  CCE26679.1 187 EAKRLRDRQREKAAREAREAREPREsRESRESRETRDKERASKSRSKSGRPSRRMD 242
                 577789999*******99999965439********************987766665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.55
  CAF-1_p150  19 ekekerlrkklklerekeekkrlkeekkee 48 
                 + e+++   + +l+r+k  ++r++  +k++
  CCE26679.1 380 QAEQQQDLGQGGLQRKKSLAQRIRHINKDK 409
                 333344444556777777777777766655 PP

>> Phage_Gp23  Protein gp23 (Bacteriophage A118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.5   0.00065       3.9      35      91 ..     189     244 ..     169     252 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00065
  Phage_Gp23  35 kriwddrkilkiemkeerekkeekrekkekeskeekdktissvdkskrl.ldkqndli 91 
                 kr+ d ++      +e re +e ++ +  +es+e +dk   s  +sk+    ++ dli
  CCE26679.1 189 KRLRDRQRE--KAAREAREAREPRESRESRESRETRDKERASKSRSKSGrPSRRMDLI 244
                 444443333..334678888888888999999999***99999988876445555655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       905  (0.0504769); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4002.62
//
Query:       CCE26680.1  [L=473]
Description: related to PET191 protein, involved in assembly of cytochrome oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00014   21.8  15.1    0.00014   21.8  15.1    2.1  2  Mucin           Mucin-like glycoprotein
  ------ inclusion threshold ------
      0.017   14.2   3.1      0.024   13.7   3.1    1.1  1  Roughex         Drosophila roughex protein
      0.089   12.2   0.7       0.12   11.8   0.7    1.1  1  Plasmodium_Vir  Plasmodium vivax Vir protein
       0.19   11.5   2.0       0.33   10.7   2.0    1.3  1  Coilin_N        Coilin N-terminus
        1.2    8.7  15.1        1.7    8.3  15.1    1.1  1  BSP_II          Bone sialoprotein II (BSP-II)
        8.1    6.7   6.2         23    5.3   6.2    1.7  1  Inhibitor_I53   Thrombin inhibitor Madanin


Domain annotation for each model (and alignments):
>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8  15.1   4.8e-08   0.00014      28      87 ..     197     257 ..     138     262 .. 0.80
   2 ?   -1.9   3.1         1     3e+03      81     126 ..     315     359 ..     309     365 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.8e-08
       Mucin  28 eGqsdaavveaaegqskltttttttkppttttttt.tasttittkttkatttttttttttt 87 
                 + q+++++ e +++q++ +t +t++  +ttt+  t t  tti+t+tt++ttttt   t tt
  CCE26680.1 197 QTQTQTKGKEIQDSQDEEETLSTPLDDTTTTKKNTdTINTTINTTTTTTTTTTTIAITNTT 257
                 457788888999999999******9988877655426667777766666666665555554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1
       Mucin  81 tttttttateaPsdavttaeaPtttttrapsrlrevdGslsssaWv 126
                 ++  t + ++ P + ++    P +t+t+ p+    +d sl s   +
  CCE26680.1 315 SPGPTPARPHQPRTRIQDDSKPKPTSTK-PTPSTPLDPSLQSIFSA 359
                 5556777888899999999999999998.88888888888776555 PP

>> Roughex  Drosophila roughex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   3.1   8.2e-06     0.024     212     324 ..     126     239 ..      87     259 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.2e-06
     Roughex 212 srlrraslaranpqtddeeeevpqarslsvrrilfadgadedgded..tdgsveekkddasepdlpdqnkeedkdeqeqqaeqeeqaqqqaeea...pv 305
                   lr++ +a+ +pq +        +   ++ r++++   d dg  +  +d s  e   ++ e    dqn+e + + q q   +e q+ q+ ee+   p 
  CCE26680.1 126 RSLRESLVAQLQPQEQT---GGGCSLGHCLERVMLSCVFDMDGLWEvlSDLSDAEADAEVDESHKGDQNRETQLQTQTQTKGKEIQDSQDEEETlstPL 221
                 34677777777777443...334456789999999999999996551156666677777789999****************************988777 PP

     Roughex 306 ssdistalketnppaepiv 324
                   d++t++k+t+     i 
  CCE26680.1 222 -DDTTTTKKNTDTINTTIN 239
                 .788888888885555554 PP

>> Plasmodium_Vir  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7     4e-05      0.12     219     318 ..     178     267 ..     128     279 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4e-05
  Plasmodium_Vir 219 kqekaaeapellnkekaeqgksekslgseslssekpearkgveeqlvhaltsassgtgndaspesiansssslesvseelssnfirniimaaail 313
                     + ++++e+++  ++++++++++++++g+e+++s+++e+         + +t+ +++t++ ++++ i+++ +++++++   +   i+n + +  il
      CCE26680.1 178 ADAEVDESHKGDQNRETQLQTQTQTKGKEIQDSQDEEE---------TLSTPLDDTTTTKKNTDTINTTINTTTTTTTTTTTIAITNTT-PSFIL 262
                     46677777777789999999999999999999988877.........456667777777777777777777777777777777777776.44444 PP

  Plasmodium_Vir 314 gtgif 318
                     +t ++
      CCE26680.1 263 ITHFS 267
                     44443 PP

>> Coilin_N  Coilin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.0   0.00011      0.33      69     137 ..     162     229 ..     156     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
    Coilin_N  69 dndcirVklegsetkleaqesededsresasksasttkqkkkkKrekkqeeqdeqkasqaakdkkkkkk 137
                 d d ++  + ++ ++ ea++++de+++  ++++ + ++q+++k +e + ++++e++ s++ +d +  kk
  CCE26680.1 162 DMDGLWE-VLSDLSDAEADAEVDESHKGDQNRETQLQTQTQTKGKEIQDSQDEEETLSTPLDDTTTTKK 229
                 6677775.5666688999999***********************************9999999888876 PP

>> BSP_II  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  15.1   0.00057       1.7     148     237 ..     175     259 ..     168     269 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00057
      BSP_II 148 neeeeaevdeneqgvngtstnsteaengngssggdngeeeeeesvteaeaegteveeeeeagsaetttspnglfeattplqeaydtttpp 237
                 + e +aevde ++g    +t+   + + +g++    ++ ++ee+   +   + ++++++++++++tt+++++++++tt + ++++tt   
  CCE26680.1 175 DAEADAEVDESHKGDQNRETQLQTQTQTKGKEI---QDSQDEEETLSTPL-DDTTTTKKNTDTINTTINTTTTTTTTTTTIAITNTTP-S 259
                 568999****99987776666555555555555...44444444444433.4445566677899999999887777777777766664.4 PP

>> Inhibitor_I53  Thrombin inhibitor Madanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.2    0.0076        23      21      69 ..     180     227 ..     174     235 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0076
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX------SS------.-TTS-- CS
  Inhibitor_I53  21 PerdsakdGnqekerallvkvqersdvdadydeydedgttptp.dPtapt 69 
                     e d + +G+q++e  l+ + q +++     d  de++t  tp d t+ t
     CCE26680.1 180 AEVDESHKGDQNRETQLQTQTQTKGK--EIQDSQDEEETLSTPlDDTTTT 227
                    6889999**********999999988..5567778888877763444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1558  (0.0868983); expected 358.6 (0.02)
Passed bias filter:                      709  (0.0395449); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 3459.89
//
Query:       CCE26681.1  [L=1242]
Description: related to GDP/GTP exchange factor Rom2p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-80  269.3   0.0    1.3e-79  267.6   0.0    1.7  2  CNH       CNH domain
    5.6e-44  149.5   0.0    1.1e-43  148.5   0.0    1.6  1  PH_5      Pleckstrin homology domain
    4.3e-35  121.6   0.0    7.5e-35  120.8   0.0    1.4  1  RhoGEF    RhoGEF domain
    2.1e-15   56.5   0.1    4.7e-15   55.4   0.1    1.5  1  DEP       Domain found in Dishevelled, Egl-10, and Pleckstrin


Domain annotation for each model (and alignments):
>> CNH  CNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.33   1.5e+03     137     155 ..     458     476 ..     423     488 .. 0.76
   2 !  267.6   0.0     3e-83   1.3e-79       1     274 [.     917    1200 ..     917    1201 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.33
         CNH 137 vpaevfsisvlkpklcvgv 155
                 + +e++s ++++++lc+++
  CCE26681.1 458 LLSECYSPTCTRDQLCYSI 476
                 3399************975 PP

  == domain 2  score: 267.6 bits;  conditional E-value: 3e-83
         CNH    1 vapitggqrlllGteeGlyllnl.sdeskpvkieklssvtqlaVleelnlllllsdkqLyvydlsaLeekeeesqlakkksenltqklpetkgchff 96  
                  v p++gg++ll+Gt++G+yl+++ ++e+ p+++    +vtq+++lee++lll+ls+k+L +y+l aL ++e    +a++k+      ++  ++c+ff
  CCE26681.1  917 VSPFDGGRKLLYGTDNGIYLSDRkNKEQMPRRVLETPNVTQIDILEEYQLLLVLSNKTLQSYSLTALNPDE----PAMTKR-----PKKIQNHCSFF 1004
                  5799*******************9999********************************************....667777.....777899***** PP

         CNH   97 airngyskekfLvvavks.....kivllewneplkkfk................kklrefqvpaevfsisvlkpklcvgvakgFelvnldegaaesl 172 
                  +  +g + ++ Lv+ vks     +i+++e+n+ ++k k                k ++ef++p+e +s+++lk+klcv++a+gFe+v+l++ +++sl
  CCE26681.1 1005 K--TGICLGRHLVCCVKSsalstTIKVFEPNDAMTKGKkqkglgkfmagghdelKPFKEFYIPTESSSVHFLKSKLCVACARGFEVVSLETLETQSL 1099
                  *..********************************************************************************************** PP

         CNH  173 ldpednsldfaarkenlkplaviqisedefLlcydefavyvdlqGrrsr.dseleWegkPesvaclepyllafhknfieirsvetgelvqeisgkkl 268 
                  ld++d+sldf+arken++p+++ +++ +efLl y+ef ++v+++G+r+r ++ ++Weg+P+s+a+++p +laf++nfie rs+e+g  v++++ k++
  CCE26681.1 1100 LDQADTSLDFVARKENVRPIHIERLN-GEFLLNYSEFSFFVNRNGWRARpEWRIDWEGTPTSFALSYPWILAFEPNFIELRSIENGA-VHIVPHKNI 1194
                  **************************.**********************************************************98.9******** PP

         CNH  269 rfllsg 274 
                  r+l+s+
  CCE26681.1 1195 RMLHSS 1200
                  ****97 PP

>> PH_5  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.0   2.6e-47   1.1e-43       1     135 []     763     888 ..     763     889 .. 0.97

  Alignments for each domain:
  == domain 1  score: 148.5 bits;  conditional E-value: 2.6e-47
        PH_5   1 lifkgtlkkketsksesadiqvyLfDhalLlvkiktvnkreqykvyrrPiPLeLLvvseaedvpkkkglkkrkssslikkkksssnlvlvpekaekkkg 99 
                 l+fk+++kk++t+    a+i+++LfDha+Llv+ik++ k+e++k+yrrPiPLeLL+++e+++v++ ++ +kr+sssli++ +++++ +      +k +g
  CCE26681.1 763 LVFKSQFKKSPTDP---AEITAFLFDHAVLLVRIKQNGKNEEIKAYRRPIPLELLAIREMDEVIPGQQGVKRSSSSLIPSIRTNNADT------KKGEG 852
                 89**********98...69************************************************************999999984......89*** PP

        PH_5 100 yaitflhlGkkgyeltLyastlaarqkwlekiekqq 135
                 ++itf+hlGk+gyel+Lyas++aar+kwle i+++q
  CCE26681.1 853 WPITFRHLGKAGYELSLYASNQAARKKWLEFIDNAQ 888
                 ********************************9986 PP

>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   1.7e-38   7.5e-35       1     182 []     540     725 ..     540     725 .. 0.93

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 1.7e-38
                 HHHHHHHHHHHHHHHHHHHHHHTHCCCHHCT.....CCHHHHHHHHCTTH...HHHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHHHH CS
      RhoGEF   1 vikElleTErsYvrdLkvlvevylkplsele.....vlseeeikiiFsni...eeilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkkYs 91 
                 vi E+  TEr++v+dL++l ++++ pl++++        ++ +k+iFsni   ++i++++ s +  +L +r+   +++   ++igdvfl+f ++f+ + 
  CCE26681.1 540 VISEICYTERDFVKDLEYLRDFWILPLRSKAspiplQRRDKAVKNIFSNIvdhPSIHNVS-SRFAASLTNRQ---QKDPIVHNIGDVFLEFVPQFEPFI 634
                 799*********************999988898876667778889****94444677777.88888798988...788889****************** PP

                 HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHHH CS
      RhoGEF  92 eYcsnypnalkllkelskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpeshpdyealkkaleaikevaseiN 182
                  Y s++ + +  ++++++ n++f++f++e+e+r+e +kl+L+ +L kP  Rl rYpLLL+++lk+t++ ++d+e++ k+l++i++++ ++N
  CCE26681.1 635 WYGSRQLEGKFEFENERSVNSHFAKFVDEIERRKESRKLELNGYLTKPTTRLARYPLLLENVLKYTEDGNSDKENIPKVLTMIRDLLGRVN 725
                 **************************************************************************************99988 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.1     1e-18   4.7e-15       6      72 .]     373     438 ..     369     438 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1e-18
                 EEECTTEEESSE-HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTSCECSSSSHCC--SSSSS-EEE CS
         DEP   6 drrkhlktypncftGseavdWLldnldiedreeAvalgqlLldqgliehvedkhqeFrdskqafYqf 72 
                 dr+k+  ty+n+f+Gseavd+L   ++++dr+ A+ lg++L +q+++++v+++h+ +rds+   Yqf
  CCE26681.1 373 DRTKNELTYKNAFSGSEAVDVLSYIIRTTDRNLALLLGRALDAQKFFHDVTYEHR-LRDSQAEMYQF 438
                 7889999************************************************.**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.23s 00:00:00.99 Elapsed: 00:00:00.39
# Mc/sec: 9540.85
//
Query:       CCE26682.1  [L=537]
Description: probable ltmQ cytochrome P450 monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-42  143.9   0.2    9.5e-42  143.3   0.2    1.2  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   0.2   5.3e-46   9.5e-42      43     456 ..      97     522 ..      86     528 .. 0.84

  Alignments for each domain:
  == domain 1  score: 143.3 bits;  conditional E-value: 5.3e-46
                 TEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSH.STTTHHHHHHHHHHHHHHHHHCCCCHCS... CS
        p450  43 skpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsf.gklsleelveeeaedlveklrkkagess... 137
                 +++  v  ++ ++++v++++   f++++  +  ++  +p++  + + a+g  w+k+R   +   +++  + +l   +  e+++l e+ +k ++es+   
  CCE26682.1  97 REYQNVDENHLSFRAVFCQE---FQFDFLLPGNSI--RPDMIPSSVIAKGLSWQKTRAAKLDDSFFKaFSAELFYGFRAEMQMLAENQHKPSTESAkas 190
                 55566667777777788877...677666666666..57888888888999999999888777666643447999999999999999999888888888 PP

                 .....EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHH...HHHCHHHHCCCCCH.HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 138 .....elditellskaaldvigsilFgarfdlledeklselvkaveelss...llskssvqllllfp.llkylptkllrklkeavkklkdlldklieer 227
                      ++  +++l+   + ++ +i+    + +l  e+l++ v++ +   +    l      ll   p ++k+   ++l + ++   +l++++++ i +r
  CCE26682.1 191 dpvsdTSAHSKWLAAPCFPFCLKIIARLTIFSLFGESLCRDVAFLDLCCDfgnALPI-DALLLRSLPsWAKPHVLRYLTTTRRL-GELQEIIRAEIDKR 287
                 887777777889999999999999888888888888876666666655552214433.33444445558888888888888888.999*********** PP

                 HHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHH CS
        p450 228 retldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpylda 326
                 r + ++a    +d ld++++   +++ ++ + d+++++ ++ ++fa+ +T+s  ++ +L+eLa++P++  +lreE+++ ++++ + t + l ++   d 
  CCE26682.1 288 RNSGEKA--PMKDILDYTMDWI-DNRRDTMFGDAHVVHVMIRVIFAALHTSSQLVAHTLFELATRPDYIGALREEVEQCFEQHGQGTKAALDSMYKIDS 383
                 *******..9**********98.4444459**************************************************9999*************** PP

                 HHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS.........CTESSCTT--TTEEGGGS-TTH CS
        p450 327 vikEtLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg.........nskrksfaflPFGaGpRnCiGe 415
                 +ikEt+R+ p+   +l R+++k+ ++++  +ipkG++++++ + +  d+ ++p++++Fd  RF++ +g              +++++ FG+G+++C+G+
  CCE26682.1 384 FIKETQRFNPLDAASLARVALKEFTFSNgLHIPKGSVIFTPNSPIFEDERFYPKAKTFDGFRFSRMRGdpklksscdL-TATNEQSMHFGTGRHACPGR 481
                 **************************999*******************************************999953.47899*************** PP

                 HHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSC.SSEEES CS
        p450 416 rlArmelklflatlLqnFevelqpetdpppileks.glllpp 456
                  +   e+kl+++ +LqnF++ + +   p+p+++   +++lp 
  CCE26682.1 482 FMVSDEVKLAVIFILQNFDIAM-ENFGPRPKNHAFgKFMLPD 522
                 *********************9.5566666666555888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4292.81
//
Query:       CCE26683.1  [L=487]
Description: probable cycloheximide-inducible protein CIP70 (cytochrome P450 family) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-37  129.4   0.0    2.1e-37  129.0   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.0   1.2e-41   2.1e-37     108     439 ..     122     455 ..      92     477 .. 0.86

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 1.2e-41
                 SHSTT.THHHHHHHHHHHHHHHHHCCCCHCS..EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSC CS
        p450 108 sfgkl.sleelveeeaedlveklrkkagess..elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylpt 203
                 ++  l ++ +++ +e +    ++ ++++ s+   ++++e++ +  + + +++++++++   +++ l++   + +++++  s+s+     + p l  ++ 
  CCE26683.1 122 TP-RLpNIIPIMMDELDHAFGQVLPTTDGSGwiPVNPYEMVLRLSTRAAARLFVSEPIC-RDQDFLNSSASYSRNIFDTISTSRSLGHVITPYLGRWIP 218
                 33.444677777777777777777777777799************************99.88888999999*********9988777777774444444 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH CS
        p450 204 kllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaa.tvlellfaGvdTtsstlswaLyeLaknPevqeklre 301
                 +++   +   ++++++l   +  rre+ + +  +r dfl+ +++    + ++ + + + +a+ t++ l +a v+Tt+++++ +L+ L+ + +++eklre
  CCE26683.1 219 SIQAAQQ-QFQRIQKMLCSEVDRRRENPEGS--TRDDFLQWCMELA--RTED-EAHAASVAHrTLGILSMAVVHTTAMASTHILFDLISDEDLKEKLRE 311
                 5555444.55999999999999999999999..9***********7..3343.4455555551667778****************************** PP

                 HHHHHC.CTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS....C CS
        p450 302 Eidevl.gdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg....n 394
                 E +++l ++ +++t++ + ++  ld   +E++R+ pv  ++  R v +++++++ + +  G+++ + +  ++ d ++ p++++F+p R+ +++g     
  CCE26683.1 312 EQNQILkQGWKNITQQAMLSMRNLDSLMRESQRINPVGEFTFRRIVRQPITLSDgFQLHPGQQIAIAAKCINSDRDLIPDADVFKPLRWTEQDGtvptT 410
                 ******98899******************************************99*******************************************8 PP

                 TESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEEST CS
        p450 395 skrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqp 439
                 ++ +s + l FG G+ +C+G+ +A   +k ++++lL  ++++lq 
  CCE26683.1 411 FSNSSASNLNFGLGRYACPGRFMAAYLIKAIVSRLLIDYDFKLQG 455
                 8899**************************************853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 3902.07
//
Query:       CCE26684.1  [L=241]
Description: related to 3-ketoacyl-acyl carrier protein reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.46
# Mc/sec: 1572.27
//
Query:       CCE26685.1  [L=366]
Description: uncharacterized protein CPUR_00154 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-21   77.1   0.0    1.6e-21   76.6   0.0    1.2  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   8.8e-26   1.6e-21       8     244 ..      91     319 ..      86     329 .. 0.84

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 8.8e-26
                      HHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt   8 leylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrlvGnklAindgdfllarafellakl 101
                      ++y+ +  G++  + +v ++   lk  +e+ ek   +  i+  +h + +++DD+ D+s+ R +q +ah ++G   + n + ++l+r+ +   k+
       CCE26685.1  91 YKYIRKLYGRHHFARFVAAFRPTLK--DEDPEKYTLILDIMDAVHLCLILVDDVCDNSTKRKNQTAAHLVYGSCETANRAYLVLTRVIHRAVKT 182
                      6777777888888888888888888..346799999***************************************************9999998 PP

                      HSTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCC...C.SHHH...HHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt 102 fekslellelfsevllqtveGqlldleeekdddls...kfslee...yleivkyKTaylfalpvalaallagasdeelealkdiglelGlaFQi 189
                         ++ l + + ++l  + eGq l l +++ d l    + ++++   y+++ + KT+ lf l   l+ ll +      ++l+d++ ++G + Q+
       CCE26685.1 183 ---RPVLGAELVRALELILEGQDLSLVWRR-DGLPafdAGAEDRvlvYKRMAQLKTGTLFVL---LGRLLNDG----GDQLDDLLGRFGWYAQL 265
                      ...55788888899999*********8884.3333122333333555************977...56666664....368************** PP

                      HHHHHHHHS-HHHHSS-T.SHHHHTT---HHHHHHHHCT-HHHHHHHHHHTTSSHH CS
  polyprenyl_synt 190 qDDylDlfgdpevlgKpa.gtDiqegkctlpilkalelaspeqrkvlkeilgkkae 244
                      q D+ ++++ +++++K a ++D+++g  ++pi+ al   ++  ++++++++g+++e
       CCE26685.1 266 QNDCKNIYSGEYATNKGAvAEDLRNGELSFPIVVALG--DKRVNTQMEKAIGSHSE 319
                      *****************98******************..44456799999997763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.55
# Mc/sec: 1989.16
//
Query:       CCE26686.1  [L=285]
Description: uncharacterized protein CPUR_00155 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2137.56
//
Query:       CCE26687.1  [L=468]
Description: related to hydroxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-29  103.1   0.0    2.9e-28   99.1   0.0    2.0  1  FAD_binding_3   FAD binding domain
    1.7e-06   27.9   1.0     0.0017   18.0   1.0    2.1  2  DAO             FAD dependent oxidoreductase
    2.4e-05   24.8   0.5    0.00066   20.2   0.2    2.7  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    2.6e-05   23.6   0.7      0.019   14.2   0.1    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    5.9e-05   23.2   0.3    0.00012   22.2   0.3    1.5  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00013   21.3   1.4     0.0049   16.2   1.4    2.1  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    0.00034   19.8   0.0     0.0005   19.3   0.0    1.2  1  GIDA            Glucose inhibited division protein A
     0.0004   19.5   0.5       0.39    9.7   0.1    2.2  2  Lycopene_cycl   Lycopene cyclase protein
    0.00044   19.7   1.1       0.11   11.8   0.2    2.2  2  Amino_oxidase   Flavin containing amine oxidoreductase
     0.0015   18.5   0.0       0.11   12.5   0.1    2.4  2  NAD_binding_9   FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.018   14.2   0.3      0.031   13.4   0.3    1.4  1  FAD_binding_2   FAD binding domain
       0.04   12.8   2.5        3.6    6.3   0.1    2.6  3  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.0   1.9e-31   2.9e-28       2     318 ..       5     335 ..       4     351 .. 0.74

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 1.9e-31
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS.S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHHCHHCS CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp.radglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradlelessp 96 
                     +VlIVG++ aGl+la+ L + Gv+ +++ek ++ +++   + g+ +   ++l+qlGl d+++ae  p +   +  +  +s  ++ +  l   s +
     CCE26687.1   5 LKVLIVGGSVAGLTLAHCLERLGVSYTVLEKGNQIAPQLgASVGILPNGGRILDQLGLFDQVEAEIEPLDFAVIRYQDGFSFKSQYPKALR-SSYG 99 
                    68******************************998877648899**********************9999877777777555577777777.6666 PP

                    T-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEEE CS
  FAD_binding_3  97 ervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvl 191
                      v+ +  +++++iL+++   +g  +v+ +++v+++++  ++ + +vr + +g+e    a+ +vGaDG++Stvr+++    e+++++       v 
     CCE26687.1 100 YPVSFLERQRFLQILYDK--LEGkENVHASKKVVAITESPDKDKVVVRTS-DGAE--YAADIVVGADGVHSTVRSEIRRHAEESSGL------PVG 184
                    77889999**********..556689****************99888887.5777..68*****************99766665554......222 PP

                    EEC-SCCCTTCCEEEEECCTTEE.................EEEECCETEEEEEEEEECCE-GGGS.....CCCHHHHHHHHHHHHHHTTSSCEE.. CS
  FAD_binding_3 192 fdadlsdiveplvlilsaesrgv.................mviPlentlerfyvqvearaekeer.....sekfteeevkarlreivgektldv.. 263
                     d++++ i+ +   i+ ++s++                   + + ++  ++f +++ ++++ +e      +   + +++ +rl + + ++ l    
     CCE26687.1 185 -DEPTTGIRYEYACIYGTSSNVPhtelgvqlsclsdgtsiHLFAGKQ--SKFFWFIIVKTSSDELleirkDASSSARRICERLGTKMLSDGLSFrd 277
                    .3344444444333333333322334444555566664335555555..77888877777777654222233444455555555555554444310 PP

                    ...EEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 264 ...eieevsawtvaqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkL 318
                       +   ++  ++++ v +++++gr+ ++GDA+  + P  GqG N+ai+Da +L   +
     CCE26687.1 278 vwsRCIIYKMTPLEEGVFKHWNRGRLVCIGDAIRKMAPNIGQGANMAIEDAAQLSNLI 335
                    0113444567788999***********************************9997655 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.0   1.1e-06    0.0017       1      49 [.       6      55 ..       6      74 .. 0.85
   2 !    8.2   0.0    0.0011       1.6     114     227 ..      79     198 ..      57     280 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.1e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglr 49
                +v+i+GG ++Gl+ A+ L r g   t+lekg++++  + g++ g+l  g r
  CCE26687.1  6 KVLIVGGSVAGLTLAHCLERLGvsYTVLEKGNQIA-PQLGASVGILPNGGR 55
                59****************77799************.888888888876665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0011
                 EEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEE.EEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HH.. CS
         DAO 114 elldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgl.eeedgkvwgverttp.gendaadavVnaaGawsd.ll.. 207
                 ++ d+   +  +p  + l+ +++yp    ++ +++++ l++++e +  +++   +v+++ e +d++ + v   t+ g++ aad vV a G++s+  +  
  CCE26687.1  79 RYQDGFSFKSQYP--KALRSSYGYPV-SFLERQRFLQILYDKLEGKE-NVHASKKVVAItESPDKDKVVV--RTSdGAEYAADIVVGADGVHSTvRSei 171
                 5555644666676..56778888999.8889999********98775.6666679999944466554555..566699978899********9984433 PP

                 HTT..CTT......TSEEEEEEEEEEEE CS
         DAO 208 gll..kel......dlpispvrgqvlvl 227
                 +++  +        d p++++r ++  +
  CCE26687.1 172 RRHaeE-SsglpvgDEPTTGIRYEYACI 198
                 444331.244455556666666666665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   4.4e-07   0.00066       1      41 [.       6      46 ..       6      49 .. 0.93
   2 ?    1.8   0.0      0.25   3.7e+02      56      79 ..     123     145 ..      98     149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.4e-07
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHH CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDee 41
                kv++vGg++ gl lA  l +lg + tv+e ++++ ++l++ 
  CCE26687.1  6 KVLIVGGSVAGLTLAHCLERLGVSYTVLEKGNQIAPQLGAS 46
                79********************************9998875 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.25
                 EEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox  56 evllntkveeiegsedgvesvklk 79 
                 +v+ ++kv++i++s+d+  +v+++
  CCE26687.1 123 NVHASKKVVAITESPDK-DKVVVR 145
                 79999*******99998.445554 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.3e-05     0.019     144     183 ..       6      45 ..       2      50 .. 0.82
   2 !    7.6   0.0    0.0013       1.9     199     239 ..     123     165 ..     103     187 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrllraldk 183
                  ++++vGg++ G+ lA  l +lg+  t++e ++++ ++l+ 
   CCE26687.1   6 KVLIVGGSVAGLTLAHCLERLGVSYTVLEKGNQIAPQLGA 45 
                  6889999999999999999999999999999888877765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0013
                  EEEESCEEEEEEETTE..EEEEEETTSCEEEESEEEE-S-EEE CS
                  xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 199 evklgtsvkeidgnge..klevvledgeeidadlvvvavGvrp 239
                  +v+  ++v++i++ ++  k+ v ++dg e++ad vv a Gv  
   CCE26687.1 123 NVHASKKVVAITESPDkdKVVVRTSDGAEYAADIVVGADGVHS 165
                  566778899999999965566*****************99965 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.3   8.3e-08   0.00012       1      32 [.       9      40 ..       9      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 8.3e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   IvG+ ++Gl++A+ L + g++ ++lek++++ 
     CCE26687.1  9 IVGGSVAGLTLAHCLERLGVSYTVLEKGNQIA 40
                   9****************************985 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.4   3.3e-06    0.0049       1     135 [.       8     164 ..       8     179 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.3e-06
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgn.....ignsiyrypkemtfisps..ftsekleipdlnaiseetspafslkeeklsrkea........ 83 
                  +I+G+  aGl+ a+ l+++g+ +y++lEkgn     +g+s+   p+  +++++   f + + ei  l + +   +  fs+k++++++           
   CCE26687.1   8 LIVGGSVAGLTLAHCLERLGV-SYTVLEKGNqiapqLGASVGILPNGGRILDQLglFDQVEAEIEPLDFAVIRYQDGFSFKSQYPKALRSsygypvsf 104
                  6********************.8******953444468899999999999987433777778888888888888877888877776533210111111 PP

  Pyr_redox_3  84 ...leYlrevaksfel....piklfeeVesvkk..edegfevetske.tyeAkkviiAtGef 135
                      ++l+ + ++  l    ++++ ++V ++++  ++++ +v+ts + +y A+ v+ A G  
   CCE26687.1 105 lerQRFLQILYDK--LegkeNVHASKKVVAITEspDKDKVVVRTSDGaEYAADIVVGADGVH 164
                  0002233333332..12233788889999998865678888988887688888888888875 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.3e-07    0.0005       1     176 [.       6     191 ..       6     203 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.3e-07
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEE-T...........THHHHHHHHHHHT-SHHHHHHHHEEEE...EEESTTS-CCC CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkldtiaelsCnpsiggi...........akgllvrEidalggliikaadkagiqf...rilNrskGpav 85 
                 +v ++Gg  AG+  A  + rlG++ + + +k ++ia      s+g +              ++ +Ei+ l+  +i+  d  + +    + l +s G +v
  CCE26687.1   6 KVLIVGGSVAGLTLAHCLERLGVSYTVL-EKGNQIAPQ-LGASVGILpnggrildqlgLFDQVEAEIEPLDFAVIRYQDGFSFKSqypKALRSSYGYPV 102
                 699*********************9998.555555433.2222222233444598776667899***************99997722245666777777 PP

                 -EEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT-EEEETTE..EEESSCTTC--B-TH CS
        GIDA  86 ralraqvdrelyskevteklenepnleiieeeveeliveekkvkgvvtedgetikakavviatGtflkgkihigek..elsaGrlgeltsegl 176
                   l    +r+++ + + +kle ++n++  ++ v+  +  +k   +v+t+dg+++ a++vv a G  ++ ++ i ++  e s  ++g+ +++g+
  CCE26687.1 103 SFL----ERQRFLQILYDKLEGKENVHASKKVVAITESPDKDKVVVRTSDGAEYAADIVVGADGVHSTVRSEIRRHaeESSGLPVGDEPTTGI 191
                 777....********************988888777766788888*******************97766666654410334445777777766 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1   0.00026      0.39       2      36 ..       7      39 ..       6      43 .. 0.93
   2 !    8.0   0.0   0.00087       1.3      83     145 ..     104     167 ..      87     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00026
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   v+++G+  Agl lA+ l  ++ g++ +++e ++++
     CCE26687.1  7 VLIVGGSVAGLTLAHCL--ERLGVSYTVLEKGNQI 39
                   89***************..***********99887 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00087
  Lycopene_cycl  83 rvsskrlkeellerlvengvklleakvesveeeea.geslvvleggrkirarlvvdarglaslk 145
                     ++++r+ + l  +l  ++    + kv +++e+++  +++v +++g +  a +vv a g+ s  
     CCE26687.1 104 FLERQRFLQILYDKLEGKENVHASKKVVAITESPDkDKVVVRTSDGAEYAADIVVGADGVHSTV 167
                    56789999999999997888888899********98889999*****************88776 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0029       4.3       1      25 [.      14      38 ..      14      39 .. 0.93
   2 !   11.8   0.2   7.4e-05      0.11     220     257 ..     119     158 ..     106     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0029
                   HHHHHHHHHHHHTTEEEEEEESSSS CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEardr 25
                   +aGL+ A++L + G++ tvlE  ++
     CCE26687.1 14 VAGLTLAHCLERLGVSYTVLEKGNQ 38
                   69*******************9886 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.4e-05
                    TTTEEEETSEEEEEEEE..ETTCEEEEETTSTEEEESEEE CS
  Amino_oxidase 220 lrgldirlntrVkeikr..egdgvtvtledgevveaDaVv 257
                    +++ +++ +++V  i+   ++d+v v+++dg ++ aD Vv
     CCE26687.1 119 EGKENVHASKKVVAITEspDKDKVVVRTSDGAEYAADIVV 158
                    35899************777777**************998 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   7.4e-05      0.11     107     154 ..     114     162 ..     104     164 .. 0.75
   2 ?    3.5   0.0     0.044        66      72     111 ..     358     405 ..     316     415 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.4e-05
  NAD_binding_9 107 llarlpegvtvevhraevvdleeradg..qavlladgaslaadaVvLAlG 154
                    l ++l eg +  + +++vv+++e++d+  + v+++dga++aad Vv A G
     CCE26687.1 114 LYDKL-EGKENVHASKKVVAITESPDKdkVVVRTSDGAEYAADIVVGADG 162
                    44444.4556677789*******99883358899************8866 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.044
  NAD_binding_9  72 Wlrerga.......lee.aeeldpddfvpRalyGrYlrdlfeellarl 111
                    + + ++a       ++e + +++ ++ + R+l+GrYl  ++e++ a++
     CCE26687.1 358 FTALQRArtesicgQSEfLVRMHANEGIGRRLLGRYLIPMLEDAPAAV 405
                    444444433355442336788999999**********99999887666 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   2.1e-05     0.031       2      44 ..       7      49 ..       6      69 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S- CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGg 44
                   v+++G+ +AGL+ A+ + + G + +v+ek+++   ++ +s G 
     CCE26687.1  7 VLIVGGSVAGLTLAHCLERLGVSYTVLEKGNQIAPQLGASVGI 49
                   9******************************988888877775 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2    0.0043       6.5       1      61 [.       6      65 ..       6      82 .. 0.82
   2 ?    6.3   0.1    0.0024       3.6     151     216 ..     105     170 ..      79     184 .. 0.78
   3 ?   -1.6   0.0      0.62   9.3e+02     306     354 ..     291     339 ..     284     346 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0043
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS-E..E--THHHHTHHHHT--HH CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvGe..atipsirkllrlLgidee 61
                    k++ivGG  aG + A  l++ +   ++ t++e+ +    + G   + +p+   +l++Lg+ ++
      CCE26687.1  6 KVLIVGGSVAGLTLAHCLERLG---VSYTVLEKGNQIAPQLGAsvGILPNGGRILDQLGLFDQ 65
                    79*******************9...89999999877667777633568887778888887665 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0024
                     E-HHHHHHHHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG-IIIII CS
  Trp_halogenase 151 ldaalyakfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfrgllieq 216
                     l+++++ ++L +  e +   + + kvv ++  +d +   +r++dg e+ ad+++ + G  + + ++
      CCE26687.1 105 LERQRFLQILYDKLEGKENVHASKKVVAITESPDKDKVVVRTSDGAEYAADIVVGADGVHSTVRSE 170
                     6899999999999999966677777778877775555579******************99987655 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.62
                     --EEES-SEETTEEE-CCCTEE--CCCS-HHHHHHHHHHHHHHT--BTT CS
  Trp_halogenase 306 ttGrrkqawvknvvalGlasgfvePlestsihliqaalrrLlallpdks 354
                     + G  k+  +  +v +G+a   + P  +++  ++ +++ +L +l+ ++ 
      CCE26687.1 291 EEGVFKHWNRGRLVCIGDAIRKMAPNIGQGANMAIEDAAQLSNLISKNI 339
                     55666665566799**************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3373.21
//
Query:       CCE26688.1  [L=961]
Description: related to serine-threonine kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-88  296.1   0.2    3.3e-88  295.3   0.2    1.4  1  DUF3543          Domain of unknown function (DUF3543)
    1.2e-60  205.1   0.0    2.1e-60  204.3   0.0    1.4  1  Pkinase          Protein kinase domain
    5.6e-42  143.8   0.0    1.1e-41  142.9   0.0    1.4  1  Pkinase_Tyr      Protein tyrosine kinase
  ------ inclusion threshold ------
       0.17   10.9   0.0       0.25   10.3   0.0    1.1  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase


Domain annotation for each model (and alignments):
>> DUF3543  Domain of unknown function (DUF3543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.3   0.2   7.4e-92   3.3e-88       2     250 ..     647     926 ..     646     927 .. 0.93

  Alignments for each domain:
  == domain 1  score: 295.3 bits;  conditional E-value: 7.4e-92
     DUF3543   2 eedtklletleelaakadvvyefAevKfkqliPlapsskeglgaeeaksesnsssaiedeeltpeaivslseealvLYvkalsllakamdiaskwWkkk 100
                 +ed ++ e + e+a+++d+vy+fAevK+kql+Plaps+++glg+   +     + ++++++lt ea+vslseealvLYvk+l+lla+amd+as wW+kk
  CCE26688.1 647 DEDVRTKEMMTEYAERSDCVYGFAEVKYKQLVPLAPSADRGLGGVGVD-----QYSQDEDGLTLEAVVSLSEEALVLYVKSLTLLAQAMDLASLWWSKK 740
                 7889999*********************************99999644.....45668889************************************** PP

     DUF3543 101 n.........akkgekvvslrlnevvqwirerFnevleKaefvrlklqeaqkqlpedhp.....e.......saessseevslsegvtaekLiYDrAle 178
                 +         + + ++++++ +n++vqw+r+rFnevleK+e+vr+kl +aq+ lpedhp     +       s++s++++v+l++g++ ekL+YDrAle
  CCE26688.1 741 SrgadsgsgvSAAVSENMAQSINAIVQWVRQRFNEVLEKSEIVRMKLLDAQRMLPEDHPsyqsnQgtdslssSSASTTNQVYLTPGISSEKLMYDRALE 839
                 *********97789*********************************************8876515667764555699********************* PP

     DUF3543 179 mSraAAvnEltgedlkgCelaYetaiwmLealldedeeeenkkee...............eldeeDrkviekliksiknRLkalrkk 250
                 mSraAA++E+t+e+l+gC+++Y tai+mLea+ld+d++   ++ +               +ld +++++i+k+ik+i+ RL+a+ kk
  CCE26688.1 840 MSRAAAIDEVTNENLPGCKISYITAIRMLEAVLDNDDDGVARRLSsgkeparswprengtDLDGDEEAHIRKMIKMIRGRLAAVVKK 926
                 ***********************************999987666699************************************9998 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.3   0.0   4.7e-64   2.1e-60       5     263 ..      27     325 ..      23     326 .. 0.89

  Alignments for each domain:
  == domain 1  score: 204.3 bits;  conditional E-value: 4.7e-64
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH..... CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee..... 98 
                 +++G+Gsf++Vy + +ke++  vA+K ++  + +kk ++++  Ei+ilk+l+hp+iv l +++e+++++ l++ey+e g+l  +++++ +ls +     
  CCE26688.1  27 NEIGKGSFAQVYLGWHKESKAAVAIKSVELGRLNKKLKENLYGEIQILKTLRHPHIVALHDCLESPTHINLIMEYCELGDLSLFIKKRDKLSTHpatsd 125
                 79************************************************************************************8888877778888 PP

                 ................HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.T.......................TTE.....EEE-SGTTSEESSSSC CS
     Pkinase  99 ................eakkiakqilegleylHskgiiHrDlKpeNiLid.e.......................kge.....lKitDFGlakelesss 152
                                  +++++kq++++le+l +++ +HrD+Kp+N+L+  +                               lK++DFG+a+ l  +s
  CCE26688.1 126 markypsapnsglhevIIRHFMKQLASALEFLRKRNYVHRDVKPQNLLLLpSqafrdeanlpimsasrdslipvaG-LaslpmLKLADFGFARVLPATS 223
                 99999999999999989********************************954788888888888877766666650.155667**************** PP

                 SBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCC CS
     Pkinase 153 kltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkk 251
                  +++ +g++ Y+APE+l++++y++k+D+Ws+G +lye++tg+ppf+++++ e     l+++e+  ++      k+p++    +e+k+l+++llk+ p +
  CCE26688.1 224 LADTLCGSPLYMAPEILRYERYDAKADLWSVGTVLYEMVTGRPPFRARNHVE----LLRKIEAAEDV-----IKFPKEVLATSEIKSLIRSLLKRSPVE 313
                 **********************************************555544....55554444444.....466777777****************** PP

                 STTHHHHHTSGG CS
     Pkinase 252 Rltaeellqhpy 263
                 Rl++e+  +h++
  CCE26688.1 314 RLSFENFFAHSV 325
                 *******99986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.9   0.0   2.4e-45   1.1e-41       3     255 ..      25     320 ..      23     323 .. 0.90

  Alignments for each domain:
  == domain 1  score: 142.9 bits;  conditional E-value: 2.4e-45
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT.... CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk.... 95 
                  + +++G+G+f++V+ g  k    +++  Va+K+++ +  +++ ke+l+ e++i+k+l+hp+iv+l+ +  +  ++ +++ey++ GdL+ f++k+    
   CCE26688.1  25 MRNEIGKGSFAQVYLGWHK----ESKAAVAIKSVELGRLNKKlKENLYGEIQILKTLRHPHIVALHDCLESPTHINLIMEYCELGDLSLFIKKRdkls 118
                  5789************999....9999*******87665555499999************************************************** PP

                  ...............CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE............................TTEEEE-STTTH CS
  Pkinase_Tyr  96 ...............ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse............................nkvvkisDfGLa 150
                                  ++ l+   + +f+ q+A+++e+L ++++vHrd+  +N Ll                                + k++DfG a
   CCE26688.1 119 thpatsdmarkypsaPNSGLHEVIIRHFMKQLASALEFLRKRNYVHRDVKPQNLLLLPsqafrdeanlpimsasrdslipvaglasLPMLKLADFGFA 216
                  *************8878888888899****************************9987789***********************98789********* PP

                  EETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEE...S-BBTTSBHHHHHHHHHHT-SS CS
  Pkinase_Tyr 151 rdiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkr...lekpekcpeelyelmkkcweed 245
                  r +     ++ +++   +  +mapE+l+++++  k+D Ws G++l+E++t g+ p++  ++ e+l+k+++ +     +k   +++e+++l+++ ++++
   CCE26688.1 217 RVL---PATSLADTLCGSPLYMAPEILRYERYDAKADLWSVGTVLYEMVT-GRPPFRARNHVELLRKIEAAEDvikFPKEVLATSEIKSLIRSLLKRS 310
                  ***...44444444555556******************************.*************999965544211455556899************* PP

                  GGGS--HHHH CS
  Pkinase_Tyr 246 peeRptfsel 255
                  p eR +f++ 
   CCE26688.1 311 PVERLSFENF 320
                  *******975 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   5.5e-05      0.25     295     346 ..     157     218 ..     120     222 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.5e-05
  Pox_ser-thr_kin 295 pdcenflhvDlkPdniLifds.....kekliikvkerkyv.....fkepvklaLnDfDfsrv 346
                        ++n++h D+kP+n+L+ +s     + +l i  + r  +        +  l+L Df f+rv
       CCE26688.1 157 LRKRNYVHRDVKPQNLLLLPSqafrdEANLPIMSASRDSLipvagLASLPMLKLADFGFARV 218
                      4578**************99965554556666655544331111123344556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.95
# Mc/sec: 3050.64
//
Query:       CCE26689.1  [L=444]
Description: probable ornithine aminotransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.7e-117  390.6   0.0   7.8e-117  390.4   0.0    1.0  1  Aminotran_3      Aminotransferase class-III
    0.00011   21.6   0.0    0.00022   20.6   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
     0.0069   15.6   0.0     0.0098   15.1   0.0    1.3  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.029   14.1   0.0      0.043   13.5   0.0    1.2  1  MAGE             MAGE family


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  390.4   0.0  1.7e-120  7.8e-117       2     406 .]      35     432 ..      34     432 .. 0.94

  Alignments for each domain:
  == domain 1  score: 390.4 bits;  conditional E-value: 1.7e-120
                  C-TTB--SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHH CS
  Aminotran_3   2 vareednlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseA 99 
                  +a+++++l++v ++a+Gv ++d +g++ylD++s++++vn+Gh+hP++vka+ +qa  l++ s +a+ n+   k+aek+ ++++   ++v+ +n+G eA
   CCE26689.1  35 AAHNYHPLPMVFSRAKGVHVWDPEGRQYLDFLSAYSAVNQGHCHPELVKALTDQASRLTLSS-RAFYNDVFPKWAEKIRDVFGY--EMVLPMNTGVEA 129
                  688999999****************************************************9.*********************..************ PP

                  HHHHHHHHHHHHHHTSHCTT-E..EEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEE CS
  Aminotran_3 100 vetAlKlarkyarekkatektk..iiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaA 195
                  +etA+K+ark+a+++k  ek k  +  ++++fHGr ++a+ ++++ ++ k+++gp +p++     +   ++ +n+         le+  +++ +++aA
   CCE26689.1 130 TETAVKVARKWAYKVKGVEKDKalVFCVTNNFHGRSMTAITLSTD-PESKENYGPYVPNIGATCPATGKAIRFNN------VADLEEAFEAHGKNTAA 220
                  ****************6666551155569****************.*************9988888778888888......3445555589******* PP

                  EEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTSB--TTT CS
  Aminotran_3 196 vivEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgshgsTfg 292
                  ++vEpiqge+Gv+v+++++lak+ +lckkh+vlli DE+qtG+GrTG + A ++ g++pD++tl+Ka++gG +p+sa+++ +e+m +++pg hgsT+g
   CCE26689.1 221 FLVEPIQGEAGVIVPDEDYLAKVYALCKKHNVLLICDEIQTGIGRTGRMLASDWSGIKPDMVTLGKAISGGmYPVSAIMGSKEIMLVVEPGTHGSTYG 318
                  ************************************************************************************************** PP

                  T-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC..HHHHHHHHHCTEE-EEETTTEEEE---T CS
  Aminotran_3 293 GnplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke..keilkkakekGvlilsaGdnvirllppl 388
                  Gnpl cav++ +le++eee ++ na++lg+ +++ L +l +    ik+vRgkGl+ a+ + e+a   +  ++++  +k+kG+l ++++ ++ir++ppl
   CCE26689.1 319 GNPLGCAVSIRALELVEEEGMIANAERLGNLFRDSLAALGSP--IIKTVRGKGLLNAMVIDESAASGRtaWDLCLLLKKKGLLAKPTHGDIIRFAPPL 414
                  ****************************************55..8**********999666666533377**************************** PP

                  T--HHHHHHHHHHHHHHH CS
  Aminotran_3 389 iitdeeidelleilkkal 406
                  +it+ e++++l+i+ +a+
   CCE26689.1 415 VITEMELRKGLNIITEAI 432
                  **************9986 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     5e-08   0.00022      34     167 ..     104     257 ..      83     258 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 5e-08
                      HHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEE..EETT.-HHHHSSTTHHHHCC--EEEEE-EBTT.................. CS
  Beta_elim_lyase  34 vnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevi..vtep.ahihfdetgaiaelagvklrdlknkea.................. 106
                      + + +++++++fg+e +l++ +G  A + ++k+   ++  ++  v+++ a ++  ++  +    ++++++l ++ +                  
       CCE26689.1 104 FPKWAEKIRDVFGYEMVLPMNTGVEATETAVKVAR-KWAYKVkgVEKDkALVFCVTNNFHG--RSMTAITLSTDPEskenygpyvpnigatcpa 194
                      5567899************************9987.4444440144443444444444443..45555666655556678999*********** PP

                      .....TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 107 .....GkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                              ++++le+a ++   h +++++ +++     ag  v   ++l++v+a++kk+++ l++D
       CCE26689.1 195 tgkaiRFNNVADLEEAFEA---HGKNTAAFLVEPIQGEAGVIVPDEDYLAKVYALCKKHNVLLICD 257
                      *755433456667777777...77799999999988875555556889***************999 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.2e-06    0.0098     130     209 ..     202     279 ..     184     399 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.2e-06
                    E-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHH.HHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTT CS
  Aminotran_1_2 130 ldlealeealkeapegnkktkvilvesphNPtGtvatlee.leklldlakkynlllfvDeaYagfvfgsldavatranvee 209
                    +++ +leea + +    k t  +lve ++   G++ + e+ l k+++l+kk+n+ll++De+  g   +    ++ ++++++
     CCE26689.1 202 NNVADLEEAFEAHG---KNTAAFLVEPIQGEAGVIVPDEDyLAKVYALCKKHNVLLICDEIQTGIGRTGRMLASDWSGIKP 279
                    57788888888643...34469999999999998776665389*****************977777765544444555555 PP

>> MAGE  MAGE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.5e-06     0.043      30      95 ..      97     163 ..      80     182 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.5e-06
        MAGE  30 krafkkvfeeaqkqLrdvFGmeLvelpskeekkstessqekr..aaekakskkstrsksyiLvstlpe 95 
                 +  +++vf++  ++ rdvFG+e+v   +    + te++ +     a k k  ++ ++  + ++++   
  CCE26689.1  97 RAFYNDVFPKWAEKIRDVFGYEMVLPMNT-GVEATETAVKVArkWAYKVKGVEKDKALVFCVTNNFHG 163
                 455699*****************964444.33333333333211334444555555566666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2991.30
//
Query:       CCE26690.1  [L=619]
Description: related to dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-80  270.2  24.6    4.3e-80  270.0  24.6    1.0  1  Glyco_transf_22  Alg9-like mannosyltransferase family


Domain annotation for each model (and alignments):
>> Glyco_transf_22  Alg9-like mannosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.0  24.6   2.4e-84   4.3e-80       6     417 .]      22     494 ..      17     494 .. 0.87

  Alignments for each domain:
  == domain 1  score: 270.0 bits;  conditional E-value: 2.4e-84
  Glyco_transf_22   6 llalrlllalltqtsfdpDEffqslEvahklvfgkgt...ltWEyspkygiRSylfllllalpyrllaelvadskiav.......lyapRllla 89 
                      l+++rl++a ++ t+f+pDE+fqslE+a +l+fg +    ltWE+     +RS l+++l++++y +  + ++             +  p+ll+a
       CCE26690.1  22 LIIIRLINAWWIGTFFQPDEYFQSLEPAWELAFGPNSgawLTWEW--HHQLRSSLHPVLFSAVYLIADWASKLLPSGSalraaivIASPKLLQA 113
                      789*************************9999987643349****..**************9997777766555443355677779******** PP

  Glyco_transf_22  90 llsalidyylfravcrky..gseiakialllslsswglfvfstrtfsnslemlltsialyllsellsrenksss.................... 161
                      + + l+dyy+++++  ++  +s+ +++al+l+l++   +++strtfsnsle++lt++aly++++ +     s+s                    
       CCE26690.1 114 VCAGLCDYYTWQLAVWTFgpNSNKSYFALFLQLFNPWQWYCSTRTFSNSLEATLTIMALYYWPWRI----FSVSvptpensempnlamgrfhvr 203
                      ************99999966566799*************************************944....22223667899************9 PP

  Glyco_transf_22 162 nekylvavlliavlavliRptsallwlplvlflllrlvkkrsktf.....lfliialvllvlllvlvlviliDslfYgkfvftplnflkyNvls 250
                      ++ ++ ++l++a++av+ Rpt++l+w+ lv+    r+  k + t      lfl+   v+l+ +lvl+++++ D+ f+g ++f+p+n l +N+ +
       CCE26690.1 204 TNLHVRISLCLAAFAVILRPTNILIWATLVIMAYARVSLKSE-TPttrpnLFLLAREVILCGSLVLAISAVSDYFFFGFWTFPPYNWLNFNISK 296
                      889999**************************8877776644.444788999****************************************** PP

  Glyco_transf_22 251 nlsslyGvhPwyfYllqnlpnilgvlllavllgllvllsr......kvsr.lllllltilltLlvysllpHKElRFllpvlPlillsaavlltr 337
                      +l  +yG +Pw++Yl+q+lp+++ ++l+++l+gl+++ls       + ++ l  l+ ++++t++ +s + HKE RF++p+lP++ ++aa + ++
       CCE26690.1 297 SLAVFYGRNPWHYYLSQGLPLLCTTSLPFALAGLFRPLSAssssvfE-TNtLRVLSCAVFTTVAALSSISHKEVRFIYPLLPMLSIIAAPAAAS 389
                      *************************************7777788854.4448899*****************************9999999999 PP

  Glyco_transf_22 338 ls...............resakvskk......lsllvllllfnvvlalllglvhqagvillvevmseleetkrknrkekketssvy........ 402
                      +                +       +      +  l  ll +n++la +l+++hq  ++   +v+s l+ + +       +++sv         
       CCE26690.1 390 FFttppapksansttekS-------TrpqlrnKPWLLALLGTNILLAGYLSFLHQPAPL---NVLSYLRREYQR-----IHPTSVQlthttthq 468
                      8889*****977553331.......23345665567777889*****************...999998888622.....334444445778899 PP

  Glyco_transf_22 403 ...........vlkecyrtPsssylh 417
                                 +l++c++tP+ s+l+
       CCE26690.1 469 apsppeelfalFLMPCHSTPWRSHLY 494
                      99**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4588.21
//
Query:       CCE26691.1  [L=1050]
Description: related to Rho GTPase activating protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-38  132.6   0.0    1.6e-38  131.9   0.0    1.3  1  RhoGAP    RhoGAP domain


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   0.0   9.1e-43   1.6e-38       1     149 [.      92     259 ..      92     262 .. 0.90

  Alignments for each domain:
  == domain 1  score: 131.9 bits;  conditional E-value: 9.1e-43
                 BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCT..TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHH....HHTSSSHHHH. CS
      RhoGAP   1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavds..dleeedvhavaslLKrfLrelpepLltkelyeelie....aaksedeeer. 92 
                 Pi+v+kc  ++++++  +egi+R+sgs++r+kel++ fd+ ++  +   ++ ++vh+ a++L+r+L++lpep+++ +lye++ e    a+k+       
  CCE26691.1  92 PIVVAKCGVYLKEKATGVEGIFRLSGSEKRIKELKQVFDSPDRYGKglVWDGYTVHDAANVLRRYLNDLPEPVVPLDLYEKFREplrgATKQ----ALg 186
                 9*******************************************9999***********************************854432222....223 PP

                 ................HHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT-TSS CS
      RhoGAP  93 ................lealkellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrpkse 149
                                 ++++++l+ +LP+ nr++L y+l++L  ++++s+en+M+++nLa +f+P +l+++++
  CCE26691.1 187 daegpqlvdnfdelaaIRKYQQLITELPPLNRQLLLYILDLLAVFSAKSDENRMNSQNLAAIFQPGMLSHPHH 259
                 4556777777888888*****************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1050 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 6850.71
//
Query:       CCE26692.1  [L=88]
Description: probable translocase of inner membrane [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-18   64.0   2.6    7.2e-18   64.0   2.6    1.4  2  zf-Tim10_DDP   Tim10/DDP family zinc finger
  ------ inclusion threshold ------
      0.041   13.5   1.2      0.041   13.4   1.2    1.0  1  Hormone_recep  Ligand-binding domain of nuclear hormone recep


Domain annotation for each model (and alignments):
>> zf-Tim10_DDP  Tim10/DDP family zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   2.6     8e-22   7.2e-18       2      64 .]      14      76 ..      13      76 .. 0.98
   2 ?   -4.0   0.3       1.3   1.2e+04       3       8 ..      81      86 ..      79      87 .. 0.47

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 8e-22
  zf-Tim10_DDP  2 qleqeqqvanaqelvnkltekCfkkCigkypgssLdsseesCldnCvdryldvsnlvskrlqe 64
                  q +q+ qv++++  +  l+e+Cf+ C+++++++ ++ +e+ C+++Cv +++ ++++vs r+qe
    CCE26692.1 14 QRMQKRQVKEFMGAFGGLVEHCFTSCVDDFTSKAVSTRENGCVNRCVLKWMATQQRVSDRFQE 76
                  88***********************************************************97 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.3
  zf-Tim10_DDP  3 leqeqq 8 
                  l q++q
    CCE26692.1 81 LTQQMQ 86
                  444444 PP

>> Hormone_recep  Ligand-binding domain of nuclear hormone receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.2   4.6e-06     0.041      92     163 ..      12      88 .]       1      88 [] 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.6e-06
                    HHHCCTTHHHHHHHHH..........HHHHHHHHCT--HHHHHHHHHHHHCTS......SS--STTH..HHHHHHHHH CS
  Hormone_recep  92 edskvskssekeqlllfgpkiiklfdeliqplqelkltetEfafllaillfnf......agdrlqgetqeiveklqek 163
                      ++ +k++ ke++  fg+ ++  f+  ++ + +  ++  E  ++   +l ++      ++dr+q+++ + ++++q+k
     CCE26692.1  12 LEQRMQKRQVKEFMGAFGGLVEHCFTSCVDDFTSKAVSTRENGCVNRCVL-KWmatqqrVSDRFQEHNAQLTQQMQNK 88 
                    4567788888999999*****************************99997.889988888888999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       986  (0.0549947); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 694.53
//
Query:       CCE26693.1  [L=1826]
Description: related to nucleoporin nup184 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-156  521.1   2.6   1.8e-156  520.7   0.7    2.0  2  Nup188_C  Nuclear pore protein NUP188 C-terminal domain
      6e-39  133.7   7.6    2.3e-33  115.2   2.4    2.3  2  Nup188    Nucleoporin subcomplex protein binding to Pom34


Domain annotation for each model (and alignments):
>> Nup188_C  Nuclear pore protein NUP188 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.058   5.2e+02     235     293 ..     240     303 ..     231     311 .. 0.81
   2 !  520.7   0.7    2e-160  1.8e-156       1     370 []    1455    1820 ..    1455    1820 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.058
                 HHHHHHCT-HHHHHCCCCTT----------.....-------B-SHHHHHHHHHHHHHHHHHHH CS
    Nup188_C 235 EvaafLnqFpelLkrsverleapeasrtss.....skeakkkitllaasEvhsLalltrileal 293
                 E  +fL  + ++ + s+++lea   s t +     ++++  ++  l+++ +hsL+++ +i+++l
  CCE26693.1 240 ESVMFLSAYLRMATLSMTSLEAGLRSITDEalllqDDTELDWLRTLLTEVIHSLSVIFQIVDSL 303
                 667899999999999999999999999988777533334458888888999*********9876 PP

  == domain 2  score: 520.7 bits;  conditional E-value: 2e-160
                  HHHHHHHHHCC-SSTT....STTTHHHHHHHHHHHHHHHHC-S------------...-----HHHHHHHHHHHTHHHHHHHCT-----------HH CS
    Nup188_C    1 LLktvwetiraveedfeealaeedveyyrtLLkvLflalrahaeaeskaeeeasakkksesvsvlqivleilkkvvakgfrslvtliHdeeakvsPe 97  
                  LL t+  ti+ vee+f    + +++ yyrtLLk+Lf++lr+++ + +++ ++++ +   ++v+v+q+vl++l++vv+kgfrslv+liH++e++v Pe
  CCE26693.1 1455 LLGTLAGTIHGVEEPF----SADSIVYYRTLLKALFVTLRSYHLSGNRSVSDSAVDLGGSTVTVTQTVLNLLDHVVGKGFRSLVSLIHENESEVFPE 1547
                  7999************....********************************999999*************************************** PP

                  HHHHHHHHHHHHCCSCCCCCSHHHHHHHHHHTTCHHHHHHHHHHCCGG-TTSS-HHHHHHHHHHHHHCTSHHHHHHHHHCTHHHHHHCSCHHHHCTS CS
    Nup188_C   98 DlalltaiLqaclavpgieqlqeqilnilasndtvrvatsLfSWsdklavegDPvYGeLsilfLleLSslpalAEqlAvdgvLsqlssanltkylrr 194 
                  DlalltaiLqacl++p+++q+q+qilni+a++d+v++atsLfSW+dkla++gDP+YGeLs+lfLleLS+lp++AEqlA+dg+Ls+l sanl+ky+ +
  CCE26693.1 1548 DLALLTAILQACLSLPNMDQSQTQILNIMAAHDVVNAATSLFSWADKLAQHGDPIYGELSVLFLLELSTLPLVAEQLACDGILSSLLSANLAKYMLK 1644
                  ************************************************************************************************* PP

                  TT--SS-S-HCCHHHHHHHHCTHHHHHHHHHCCTTTSSHHHHHHHHCT-HHHHHCCCCTT-----------------B-SHHHHHHHHHHHHHHHHH CS
    Nup188_C  195 ekvspfdeaavaqRlysiWakgiLPLlLNlLtavgatvApEvaafLnqFpelLkrsverleapeasrtssskeakkkitllaasEvhsLalltrile 291 
                  ++vsp+++++v qR+y+iW+kg+LPL+LNlL+++gat+A+E++++LnqF++lL +sv+r+eap+asrt+ s ++++++tlla+sE+hsLalltr+++
  CCE26693.1 1645 STVSPYADTSVGQRCYAIWVKGFLPLMLNLLASLGATLASEITYILNQFSHLLDASVDRFEAPGASRTK-SASSPQYLTLLATSEIHSLALLTRVIS 1740
                  *********************************************************************.78899********************** PP

                  HHHTT-SS--------HHHHHHHHHHHHT-HHHHHHHB---SHHHHHHHHS---..SS-S-SSHHHHHHHHHHHHHHHHH CS
    Nup188_C  292 alrevnardipevewdaasvkedvefwlssrklLrerlvplgerelelarkkae.desskaenrLeekvvaeleavrdvL 370 
                  alr++n+rdip++ewdaasv+e+vefwlss++lL+erl+plg re+++++++++   +++++n Leekvv++le+vrdvL
  CCE26693.1 1741 ALRANNNRDIPTIEWDAASVLENVEFWLSSKRLLKERLLPLGPRETDWRNTRRKiGPADGTDNILEEKVVSQLETVRDVL 1820
                  **************************************************99987899********************98 PP

>> Nup188  Nucleoporin subcomplex protein binding to Pom34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   6.7e-09     6e-05      95     313 ..     186     431 ..      83     447 .. 0.74
   2 !  115.2   2.4   2.6e-37   2.3e-33     409     925 ..     590    1153 ..     465    1154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.7e-09
      Nup188  95 sllasyilrERrsvLkvvlelln............ylsstlhplskeiaefveklsskyisklisllqklieeltseeastkekneelseelqeliase 181
                   + + +l+ERr+   ++ +l +             +++ ++ ++ +i  + ++ s   +s  + + +  +++l +   s  +++  l+++++  +   
  CCE26693.1 186 RRIFQMFLSERRHFAMSMDYLQSirlygrlpifviGAEKLVRLYKLKILPNAKDESVMFLSAYLRMATLSMTSLEAGLRSITDEALLLQDDTELDWLRT 284
                 33777888888888888888877888888888777677788888888888888888888888888888888888887777778888889999999**** PP

      Nup188 182 nlleiiellkilllli..lnse.vpkeevekwfkllketnrrqefkhlldesesdeelvkriesletiislevLdL....essidlksdd......... 264
                  l e+i  l +++ ++  l+++  p++ +++wf+l+++ +    f + +  +e+  +l+  ++ l++ +sl +L      +++ + +  d         
  CCE26693.1 285 LLTEVIHSLSVIFQIVdsLDTGfPPSSVICQWFSLMETYS---FFDTIQPINEVIGKLIVPLKTLAMGVSLSLLKPaqslTFLAERE--Ddptpsdetl 378
                 *************99744677744556679**********...66555556677888888888888888888887655433333333..1457778999 PP

      Nup188 265 ..llndeevfkkinsvlln..lsskk.npiilyaWsiillrksilleeepeeke 313
                   +l  + v +++++ + n  +++++  ++i++aW ++l+   + +++  e+  
  CCE26693.1 379 dsYLVLSDVLEQVHKSVMNaaSMDSEsATPIIFAWTLLLHCMNMSYQSRTEK-R 431
                 99***************99775666679**********98888777776653.3 PP

  == domain 2  score: 115.2 bits;  conditional E-value: 2.6e-37
      Nup188  409 liiarakfPlleesLlplikllsin.gefAn.....felkeLksY.teklkknelddlydidde..ntdliklksellvkppfesn.....kklsll 491 
                  ++ a  + P ++ +++++ k+l ++ ++++      f+l+ L    t ++++ ++ + y++ +e  nt+ ++l +e+ +  + +s      ++    
  CCE26693.1  590 FQQALDRYPYEFLPFISMCKALCTAaSDLSDqdrsdFILSLLRATpTITFTLPDSFQAYELVQEdeNTNAFVLLEEVPLIALSSSWsrryiEDDAYR 686 
                  5566666666666666666654433033333556665555554443444554444445555444447777777777644444443201111344567 PP

      Nup188  492 lpkgTkgkilpvakededlvtFlykYngWsllgrvLq.nllkvyssksas.ldeekveliidildlvtkvvssdisvekskeileslSayvdds... 583 
                  lp g  g  +   ++   +v  +y  +  sllgr L+ nl     ++ +  l  ++ e i+++++l++++++ ++  + s+    ++   + ds   
  CCE26693.1  687 LPVGSYGRFI---TDTGRVVLMEYPHSSLSLLGRLLEiNLTR---EGYNCgLGMLEPEEIAEVISLLATLFRMEYLRSGSQV---NMTLVIHDSdll 774 
                  8888888888...4666799999***********99934444...3233367888999999999999999987777666665...566677666677 PP

      Nup188  584 ...........dIievifrlleq......aL.hnrnvellvsclnlltalvpnfpqrvWsyLsksdLLprkgkeGlagtilgsiElvnGeYsftisl 662 
                             dI+ v+ + +        a+ ++  +++l++c+++l ++ p  p rvWsyL++sdLL+++ ++G  + i g++ lv  ++++  s 
  CCE26693.1  775 aesskhisggkDIVTVVCETMDYfmqdelAMsEEAAINVLTACVKFLDSILPSQPSRVWSYLARSDLLNSESRAGKLTKITGNLDLVSERFELLKSS 871 
                  77799999999******88765544485544235679************************************************************ PP

      Nup188  663 lkLtktlvkesls..............lkndfp..ekskseiLsk....lifhlievfesfqkwrYnslkqrleigvllldvfskiLelvygidkev 739 
                  l L + l+++++s               k++++    ++ ++L+k    +  + ++vfes ++wr+     r  +  +++ v+ k++  +y +  e+
  CCE26693.1  872 LLLFSRLIDNAMSsavqrragnkpaskQKTEVNpwLDTSDKVLAKvseaIARVSVDVFESTSTWRFDAELSRTSLLDSVVPVLDKLIVYSYSM-GES 967 
                  ***********999999998888764422222222346777888722224457799************************************9.788 PP

      Nup188  740 epeekvtkvlssaaecilslfltedsvvragqsllniiesgsdnlesielsdisgqlydqliqlslslanllisirsslnlspSplEkaLfsqspkL 836 
                  ++++   + l+ aa+ i+++f+t+ s     q++l+ + + +    +     +s + +++  + +l ++ +l++  ++l  + + lE  Lf+ s+ +
  CCE26693.1  968 PTSDSLVSCLRPAASYIIDCFMTPASGALRFQPILSSLITAVTRAGTT-IYPTSTAIFSRQTNTMLRFCSTLLRAARYLAKPSTVLELYLFKISTII 1063
                  8889999*****************666667999998887777654443.3344456777888999**************998889********9999 PP

      Nup188  837 VdvyasyeslkkdiikLLtsLv..eapwedeyPSLLshLGeeaskalldsllsdLenkledyklkislyeFlsavmegkQdGLsilFltgr 925 
                    + a    +++ +i+LL++Lv  +a+  +++PSLL +LG + sk++l+ +l+dL  +++      +  +F+sa++++kQ+ +s  +ltg+
  CCE26693.1 1064 ARLCAMSDIFRAASIDLLEALVvnSASNASDPPSLLGYLGPQVSKSFLQ-VLADLGRPFNLATEIGTTWKFFSAILRSKQQWMSNCLLTGQ 1153
                  9999******************7556666677**************998.578******9888888899********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.45
# Mc/sec: 12278.99
//
Query:       CCE26694.1  [L=766]
Description: probable anthranilate synthase component II [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-95  318.2   0.1    4.9e-95  317.5   0.1    1.3  1  IGPS       Indole-3-glycerol phosphate synthase
    1.5e-47  161.9   1.6    1.4e-43  149.0   0.0    2.7  3  PRAI       N-(5'phosphoribosyl)anthranilate (PRA) isomerase
    2.6e-38  131.7   0.0    1.3e-36  126.1   0.0    2.3  2  GATase     Glutamine amidotransferase class-I
     0.0027   17.5   1.5       0.79    9.5   0.1    3.2  3  QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal
  ------ inclusion threshold ------
      0.028   13.5   0.5      0.081   11.9   0.0    1.9  2  FMN_dh     FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.5   0.1   1.4e-98   4.9e-95       1     254 []     255     517 ..     255     517 .. 0.98

  Alignments for each domain:
  == domain 1  score: 317.5 bits;  conditional E-value: 1.4e-98
                 HHHCHHHHHHHHHHHHCCS-G..GCCCCG....-SS-SS-HHHHCHCHTTS-EEEEEE-SEETTTEESBSS--HHHHHHHHTTT.-SEEEEE--CCCC- CS
        IGPS   1 lekivaekkeevaeakkrqsl..adleaav..klakpkrsfaeaLresekklaliaEvKkaSPskgliredfdpaeiAkkyeeagAsaiSVLteekyFq 95 
                 l++i+a++k++va +k+ +s   +dl+aa+  ++a+ +  f+ +L++s  ++al+aE+K+ SPskg ++ d++++ +A+ky+ agAs+iSVLte+++F+
  CCE26694.1 255 LQRIYANRKAAVAIQKQIPSQrmSDLQAAYdlNAAPAQVPFVARLKQSPFDVALMAEIKRGSPSKGIFALDINAPVQARKYALAGASVISVLTEPEWFK 353
                 79*************999877669****999899***************************************************************** PP

                 --CCHHHHHHHH-SS-EEE.....ES---SHHHHHHHHHCT-SEEEEECCCS-HHHHHHHHHHHCCTT-EEEEEESSHHHHHHHHHTT-SEEEEESEET CS
        IGPS  96 GsledLrevrqavslpvlr.....KdFiideyqieearalgadaiLLivkvledeeleelaeaakslglevLvEvhdeeeleralklgakiiGvNnRnL 189
                 Gs+edLr+vrq ++ + +r     K+Fi++eyqi ear++gad++LLivk+l+ e+le+l+++++slg+e+LvEv+++ee+e+a+klg+k+iGvNnRnL
  CCE26694.1 354 GSIEDLRAVRQVLDGMPNRpailrKEFIFEEYQILEARLAGADTVLLIVKMLDTELLERLYKYSQSLGMEPLVEVQTAEEMEIAVKLGSKVIGVNNRNL 452
                 **************9988888888*************************************************************************** PP

                 TTTEE-CHHHHHHCHCC-TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHHHHHH CS
        IGPS 190 ktlevdlntteeLaklvpkdvllvaeSGiktredveklkeegvnafLvGeslmrqedvekairel 254
                 +++evd+ntt +L+k+vp+++l++a+SGi++++dv ++k++gvna+LvGes+mr++d++ +i+el
  CCE26694.1 453 ESFEVDMNTTGRLRKMVPDHTLICALSGINSHNDVLMCKNDGVNAVLVGESIMRAPDASVFITEL 517
                 ******************99**************************************9999986 PP

>> PRAI  N-(5'phosphoribosyl)anthranilate (PRA) isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       3.1   1.1e+04       7      22 ..     275     290 ..     250     312 .. 0.63
   2 !   11.4   0.1   5.6e-05       0.2       1      49 [.     535     583 ..     535     589 .. 0.94
   3 !  149.0   0.0   3.8e-47   1.4e-43      40     193 ..     608     760 ..     591     761 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 3.1
                 -SHHHHHHHHHHTSSE CS
        PRAI   7 trasdvkaavkagade 22 
                 +r sd++aa++ +a+ 
  CCE26694.1 275 QRMSDLQAAYDLNAAP 290
                 3445555555555544 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.6e-05
                 TCE----SHHHHHHHHHHTSSEEEEE--TTBTTB--HHHHHHHCCCS-- CS
        PRAI   1 akicgltrasdvkaavkagadelglifaesskrevseeqaqellekvpa 49 
                 +k+cg ++ + +k+av+++ad++g+  ++ +kr++s e a +++ +v+a
  CCE26694.1 535 VKVCGTRSVEAAKQAVESKADFIGVCLVSGAKRCISHETAMAISAAVHA 583
                 699*************************************999988875 PP

  == domain 3  score: 149.0 bits;  conditional E-value: 3.8e-47
                 HHHHCCCS--EEEEEESSS-HHHHHHHHHHCTECEEEE-CGG.-HHHHHHHHHHS-TTSEEEEEEE-SSS--S-SSTT-SEEEEESSS-SSSXXXXGGG CS
        PRAI  40 aqellekvpaklVGVfvNqpieevlriaqelgldvvQLHGdedeqeyeellktelpvikalkvaesvdevkearradhvdllllDsgaGGtGelldwsl 138
                 a   l+ ++++lVG+f+Nqp++evl++++ ++ld+vQLHG+e + e++++++  +pvi+a+k+ +    v +  r +h +++llDsgaG +G+lld s 
  CCE26694.1 608 AGNRLQGSRTRLVGIFQNQPLSEVLEKQKLYNLDLVQLHGEE-PIEWAKVIP--VPVIRAFKPGQ----VGIGLRGYH-TVPLLDSGAG-SGKLLDVSN 697
                 44445788889*******************************.*********..***********....99*******.*******998.********* PP

                 GTTSXX....TTEEEESSXXTTTHHHHHT......TXXSEEEEXGGGEEETEEXHHHHHHHHH CS
        PRAI 139 iskllks...lkviLAGGLtpeNvaeaik.....legvlgvDvssGVEtnGvkDlekirkfvq 193
                 ++ +l++   l+++LAGGL+p+Nv+ea++     + +vlgvDvssGVE++G + l+ki++fv+
  CCE26694.1 698 VKAVLEKdpeLRIFLAGGLNPDNVTEAVNalgefSDRVLGVDVSSGVEEDGEQSLAKIAAFVK 760
                 *****999***********************99999*************************98 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.0   3.7e-40   1.3e-36       2     187 ..      28     209 ..      27     211 .. 0.95
   2 ?    3.1   0.0     0.019        69      60      79 ..     542     561 ..     535     608 .. 0.92

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 3.7e-40
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT..TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg..vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekek 98 
                 liDnyds+t+n+ ++l+  g++v+v+++d+    +l ++knp+++++s+Gpg+p+   + + +ai+++++ kiPi+G      ++++ +g++v ++  +
  CCE26694.1  28 LIDNYDSFTWNIYQYLILEGATVHVFRNDQITVDEL-IEKNPTQLIISPGPGHPTtdSGVSRDAIRHFAG-KIPIFG------CMFDVYGGEVGSAG-E 117
                 89***************************8444443.68****************99999**********.******......89************.9 PP

                 EEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTE....EEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHH CS
      GATase  99 ehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtaksedde....elmeiiekknpfvgvQFHPEststpegpellfnfl 187
                   hg+t++l++d+++++ gl++ + ++++H+++  +  ++p++levt + ++d+     + ++++k+  + gvQFHPEs++t +g ++++nfl
  CCE26694.1 118 WLHGKTSPLTHDSKGVFAGLEQGLPVTRYHSLAGSH-VTLPECLEVTSWVAKDDgspgIIQGVRHKEFAMEGVQFHPESILTAHGRKIIKNFL 209
                 ***********************************9.***********99988888999********************************96 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.019
                 HHHHHHHHCTSTS-EEEETH CS
      GATase  60 kieaikearenkiPiLGICL 79 
                 ++ea+k+a e+k  ++G+CL
  CCE26694.1 542 SVEAAKQAVESKADFIGVCL 561
                 789****************9 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00022      0.79      84     161 ..     425     507 ..     402     512 .. 0.79
   2 ?    0.5   0.0      0.12   4.4e+02      86     134 ..     539     585 ..     517     592 .. 0.58
   3 !    4.2   0.0    0.0089        32     118     144 ..     698     724 ..     691     747 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00022
                 EEEESSHHHHHHHHHHT-SEEEEES--HHHHHHHHHHHHHHSTT.....SEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB CS
   QRPTase_C  84 evevesleeleevleaeadiimLDnfsveelkkaveelkeknkr.....vlievSGgvtlenveeyaksgvdvisvgalthsv 161
                  vev++ ee+e +++ +  +i + n + e ++  ++++ +  k      ++   SG  + ++v   ++ gv+++ vg  + ++
  CCE26694.1 425 LVEVQTAEEMEIAVKLGSKVIGVNNRNLESFEVDMNTTGRLRKMvpdhtLICALSGINSHNDVLMCKNDGVNAVLVGESIMRA 507
                 7*************************99888776666544444345575777788888999***************9888776 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.12
                 EESSHHHHHHHHHHT-SEEEEES--HHHHHHHHHHHHHHSTTSEEEEES CS
   QRPTase_C  86 evesleeleevleaeadiimLDnfsveelkkaveelkeknkrvlievSG 134
                  ++s+e +++++e +ad i +  + v   k+++   ++++++ ++ +SG
  CCE26694.1 539 GTRSVEAAKQAVESKADFIGV--CLVSGAKRCISHETAMAISAAVHASG 585
                 467777777777777777754..44455555555555555555555555 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0089
                 HHHHHHHSTTSEEEEESS--TTTHHHH CS
   QRPTase_C 118 veelkeknkrvlievSGgvtlenveey 144
                 v+ + ek+++++i+ +Gg++ +nv+e 
  CCE26694.1 698 VKAVLEKDPELRIFLAGGLNPDNVTEA 724
                 5566679999**************985 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.3e-05     0.081     223     304 ..     427     505 ..     384     511 .. 0.95
   2 ?   -1.5   0.2      0.28     1e+03     217     244 ..     531     560 ..     525     589 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.3e-05
                 EE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHH CS
      FMN_dh 223 GvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpfl 304
                 +v+tae+++ av++G + i v N   R+l++    +++  ++++ v++++ + + +Gi + +Dvl     G +avl+G  ++
  CCE26694.1 427 EVQTAEEMEIAVKLGSKVIGVNN---RNLESFEVDMNTTGRLRKMVPDHTLICALSGINSHNDVLMCKNDGVNAVLVGESIM 505
                 69********************9...9***************************************************8876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.28
                 SEEEEE..EE-SHHHHHHHHHTTESEEEE- CS
      FMN_dh 217 lplvvK..GvltaedakraveaGvdgivvS 244
                  pl+vK  G  ++e ak+ave  +d i v 
  CCE26694.1 531 KPLLVKvcGTRSVEAAKQAVESKADFIGVC 560
                 57777755679999*******999999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 5155.49
//
Query:       CCE26695.1  [L=340]
Description: uncharacterized protein CPUR_00164 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-08   32.8   1.8    5.5e-08   32.8   1.8    2.1  2  Use1          Membrane fusion protein Use1
  ------ inclusion threshold ------
       0.18   11.1   9.6        5.5    6.3   6.7    2.3  2  DUF4407       Domain of unknown function (DUF4407)
        0.3   10.9   5.4        5.1    6.9   0.3    2.4  2  Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
       0.71   10.2   2.6         21    5.4   0.2    3.1  3  Phage_Gp23    Protein gp23 (Bacteriophage A118)
       0.84   10.0   4.3        6.5    7.2   0.4    2.6  2  AAA_assoc_2   AAA C-terminal domain


Domain annotation for each model (and alignments):
>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   3.7      0.16   5.8e+02     109     169 ..      30     106 ..       6     144 .. 0.79
   2 !   32.8   1.8   1.5e-11   5.5e-08     106     232 ..     165     319 ..      96     335 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.16
        Use1 109 lrqkekakyqkelrkellgkndsssspekekeskkk................ksdedldavlkkhenlqEklaeeml 169
                 lr++++  + + +r++ l++++ ++++++++ ++ +                +++++++a+l+ +++  E l + + 
  CCE26695.1  30 LRLQQNVLHATPERERRLRTSEFERAKVESNLDHARsvlttleqvalritapQKRAETQALLNSNRDRLETLLDRLQ 106
                 66777777777777777777777777666666666677888888888888888899999999999888888887664 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 1.5e-11
        Use1 106 s........................kelrqkekakyqkelrkellgkndsssspekekeskkk..ksdedldavlkkhenlqEklaeemlsLarnLKen 178
                                          +elr +++a+  +   +e l+ ++++++  ++++ + +  +s+  ++a+l +++  ++ l e +l++a  LK++
  CCE26695.1 165 HesprlldsslmagtspsmpatlttQELRSRSSAQDPTTASTETLSHSSARAALFANRRGPAEprTSTVTAEAILDQQSAEHDALSESILKMASALKKS 263
                 12233333223333333333333337777777777777777777766666655554444333377********************************** PP

        Use1 179 slaasqiikkDtetlsksekaadqnlaslkkeserlee.h.skskvkcllwlllfv 232
                 sl  s+ +  D+e l k  + + +  +s++k+  r+   +  +    ++  ++lf+
  CCE26695.1 264 SLKFSSTLDADKELLGKAGEGISKTEQSMEKARGRMGAlRrMTEGKGWWGRMMLFA 319
                 ***********************************998645777777888888775 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.7    0.0015       5.5     118     241 ..       5     120 ..       2     126 .. 0.85
   2 ?    5.4   0.0    0.0027       9.7     177     274 ..     224     332 ..     166     337 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0015
     DUF4407 118 eeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalr 216
                 ++a+++++  a++ +a+la+l++ + +lq+++  a  ++++  ++ + e           v+ + + a++  + l++   ++++ +++ + +a l+++r
  CCE26695.1   5 SQATAISDAAASCPEATLAQLTRLLLRLQQNVLHATPERERRLRTSEFERAK--------VESNLDHARSVLTTLEQVALRITAPQKRAETQALLNSNR 95 
                 688999999999********************99999999888888877664........666788899999999999999999998888888999999 PP

     DUF4407 217 aelaeleaerakeraasqaaaaadd 241
                 ++l++l +++++ r+ s+++++++d
  CCE26695.1  96 DRLETLLDRLQDLRQISNDENDGSD 120
                 9999999999999998888888776 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0027
     DUF4407 177 gvaGkgpaakekkaqldaaqaelaelkakld...........atarlaalraelaeleaerakeraasqaaaaaddGllarlealdrltkedatallar 264
                 g a   +++ +++a ld+++ae ++l++++            + + + ++++el + + e ++++++s ++a++  G l r++  +  + + +  ++++
  CCE26695.1 224 GPAEPRTSTVTAEAILDQQSAEHDALSESILkmasalkksslKFSSTLDADKELLGKAGEGISKTEQSMEKARGRMGALRRMTEGKGWWGRMMLFAWVY 322
                 344555666678888889999999888887688888889888444445555555555666677777777778888888888877777766666655655 PP

     DUF4407 265 lllfllflai 274
                  l   l+l++
  CCE26695.1 323 GLMVGLLLLV 332
                 5555555555 PP

>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.9     0.003        11     112     174 ..      89     150 ..      60     152 .. 0.89
   2 ?    6.9   0.3    0.0014       5.1     116     174 ..     241     299 ..     232     301 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.003
  Bacillus_HBL 112 eeiqqnqkevkqlikeLkklklklakdsknFktdvdeltsilagdsgvisqlqneiedlqgki 174
                   + +++n    ++l+  L++l+ ++ +d+++ + d d lt ++++ s  i+ l  + +d  ++i
    CCE26695.1  89 ALLNSNRDRLETLLDRLQDLR-QISNDENDGSDDEDLLTGMMQTPSESIQSLSSDTNDEPQTI 150
                   5578999999**********8.79***************************998887766555 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0014
  Bacillus_HBL 116 qnqkevkqlikeLkklklklakdsknFktdvdeltsilagdsgvisqlqneiedlqgki 174
                   q+++e ++l++ + k++++l+k s +F++++d  ++ l+  +  is+ ++ +e+++g +
    CCE26695.1 241 QQSAEHDALSESILKMASALKKSSLKFSSTLDADKELLGKAGEGISKTEQSMEKARGRM 299
                   566677889999***************************************99998876 PP

>> Phage_Gp23  Protein gp23 (Bacteriophage A118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2    0.0059        21      57      86 ..      41      70 ..      25     114 .. 0.83
   2 ?   -0.1   0.1       0.3   1.1e+03      90     111 ..     238     259 ..     234     266 .. 0.77
   3 ?    2.7   0.0     0.041   1.5e+02      70     106 ..     264     300 ..     258     309 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0059
  Phage_Gp23 57 ekrekkekeskeekdktissvdkskrlldk 86
                 +re++ + s+ e+ k+ s +d+ +++l  
  CCE26695.1 41 PERERRLRTSEFERAKVESNLDHARSVLTT 70
                5899999****************9999654 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.3
  Phage_Gp23  90 liksekkaidelskslvklaqk 111
                 ++ ++    d ls+s+ k+a  
  CCE26695.1 238 ILDQQSAEHDALSESILKMASA 259
                 455666789*********9975 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.041
  Phage_Gp23  70 kdktissvdkskrlldkqndliksekkaidelskslv 106
                   k+ s++d +k+ll k  + i + ++++++    ++
  CCE26695.1 264 SLKFSSTLDADKELLGKAGEGISKTEQSMEKARGRMG 300
                 5699***************999999999887644444 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.3      0.02        70      23      64 ..      64     104 ..      57     116 .. 0.66
   2 ?    7.2   0.4    0.0018       6.5      41      79 ..     225     263 ..     185     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.02
                  XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX CS
  AAA_assoc_2  23 aRkaLnlLElaaeaaeakegkieitledleealqrkalryDk 64 
                  aR++L++LE +a    a  +k+  t++ l++  +r  ++ D+
   CCE26695.1  64 ARSVLTTLEQVALRITA-PQKRAETQALLNSNRDRLETLLDR 104
                  8********66655544.344444445554444554455554 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0018
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHH CS
  AAA_assoc_2  41 egkieitledleealqrkalryDkagdehYdliSAlhKS 79 
                    + + +  ++e++l+++++ +D   ++   ++SAl KS
   CCE26695.1 225 PAEPRTSTVTAEAILDQQSAEHDALSESILKMASALKKS 263
                  455566777889999***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2340.89
//
Query:       CCE26696.1  [L=165]
Description: uncharacterized protein CPUR_00165 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-18   65.0  12.6    5.1e-18   65.0  12.6    2.0  2  cwf21     cwf21 domain
  ------ inclusion threshold ------
       0.14   12.1   9.2      0.079   13.0   2.1    2.4  2  GvpG      Gas vesicle protein G


Domain annotation for each model (and alignments):
>> cwf21  cwf21 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0  12.6   5.7e-22   5.1e-18       1      44 []      54      97 ..      54      97 .. 0.98
   2 ?   -2.8   0.1      0.86   7.7e+03      35      44 .]     151     160 ..     149     160 .. 0.65

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 5.7e-22
       cwf21  1 LeHerrReIEvkvlelrdeLEeeglseeeIeervdelRekLlke 44
                LeH+r+R+IEvkv+elrd+LEee+ +++eI++r+d lRekL++e
  CCE26696.1 54 LEHDRKRQIEVKVFELRDQLEEEEIDDDEIDKRCDDLREKLTAE 97
                8**********************89****************987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.86
       cwf21  35 delRekLlke 44 
                 ++lR+ L+ke
  CCE26696.1 151 ERLRDGLVKE 160
                 4577777765 PP

>> GvpG  Gas vesicle protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.1   8.8e-06     0.079      26      75 ..      55     104 ..      47     109 .. 0.85
   2 ?    3.2   0.8      0.01        90      18      65 ..     115     157 ..     113     165 .] 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.8e-06
        GvpG  26 qlddqenlrkeLaaLqqeLdaGeIdeeeFdrrEeelLdrLealerleaes 75 
                 + d +++++ +  +L  +L++ eId++e d+r + l ++L a  ++ +++
  CCE26696.1  55 EHDRKRQIEVKVFELRDQLEEEEIDDDEIDKRCDDLREKLTAEAESGKKG 104
                 6788999*********************************9666555544 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.01
        GvpG  18 qvqeraeeqlddqenlrkeLaaLqqeLdaGeIdeeeFdrrEeelLdrL 65 
                 +v+e a++++++ e lr  L ++  + ++G     ++ r+Ee+l d L
  CCE26696.1 115 EVHEMADAKIKESERLRRAL-KISSDYEEGS----HWKRQEERLRDGL 157
                 68999999999999999877.5677777774....7888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1188  (0.0662614); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1239.83
//
Query:       CCE26697.1  [L=417]
Description: related to cell cycle progression protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-114  382.7   0.0   1.3e-114  382.5   0.0    1.0  1  D123      D123


Domain annotation for each model (and alignments):
>> D123  D123
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.5   0.0  7.2e-119  1.3e-114       1     306 []      36     384 ..      36     384 .. 0.92

  Alignments for each domain:
  == domain 1  score: 382.5 bits;  conditional E-value: 7.2e-119
                 HHHHHGGGS--EEEES--HHHHHHHCSSSEE-----.........................------------------..--...HHHHHHHHHHHHH CS
        D123   1 WypkfrkltikskiiplpeefleYLeedgivlpeeseeeke..........saeesesdsdseesdsedeeeeeeeeee..pseefpeleekikeaiee 87 
                 W+p++r++++kski+plp++ ++YL+edgi+l+ee+e++ +          +a++++++++s+es++edee+e+ +  +  p+e+fpe++++ike+i+e
  CCE26697.1  36 WFPMYRTSCLKSKIVPLPPSAVAYLQEDGILLAEEEEANVApsdpewhssgAAAHPRASQQSDESSDEDEEDEP-P--RlpPNERFPETHNRIKEVIAE 131
                 ************************************99988999999865433333333333333333222222.2..2349***************** PP

                 TTS-EEEE-SS---GGGCCTSSSSS.S-BSSHHHHHHHHHT-HHHHHHHHHTTTTBT--TTS-S-TT----EEEEE-----GGGEEEEEEETTEEEEEE CS
        D123  88 lggavfpKlnwsaPkDAawilaens.lkctsvndvylLLksSdfiahDLehafdeceeeeeesekeeieleLvLrkwfdlnpslefRcFVkdrkLiais 185
                 lggav+pKlnwsaPkDA+w++++++ lkcts+nd+ylLLksS+fi+hDL+hafd c   +++ +++++ ++LvLr +f+ + +lefRcFVk+r L++i+
  CCE26697.1 132 LGGAVAPKLNWSAPKDAKWVSPHQNsLKCTSPNDIYLLLKSSSFITHDLDHAFDGC---TAHPPSRPFAPVLVLRPFFTPHVALEFRCFVKHRCLVGIT 227
                 ***********************999******************************...89999*********************************** PP

                 ESSSS--THHHHTHHHHHHHHHHHHHT..TTTSSSSSEEEEEEEETT........EEEEEEEEESSTTS--TTS-HHHHH................... CS
        D123 186 qRdlnyydfleelkeelkekieeffeeklkekfpdesyvfDvyvpkk......ldkvkliDinpfaertdslLFtweeLl................... 259
                 qRdln+ydfl++l+++l +k++ ff+ekl+ +fpd+s++fDvy+p++      l+kv+l+Dinp+a+rtdslLF+w+eLl                   
  CCE26697.1 228 QRDLNFYDFLQRLRPQLWKKMTIFFKEKLRLTFPDASFTFDVYIPEDpiaddgLGKVRLMDINPWAPRTDSLLFSWQELLemevkrplygssagddnad 326
                 *************************************************************************************************** PP

                 ................HS-TTSSS-EEE----XXXX...XXXXXXXXXXXXXXXXXXXX CS
        D123 260 ...........eeeeeeeeeeeeepelrlvesekdvea.nfaskeysankvPkdvvdas 306
                             ++++ + +++  pelrl+ +++d++a nf+s++ysa+k+Pk+vv+as
  CCE26697.1 327 tsgdetaaedtGDNTNMAYQSNALPELRLI-EKDDPAAfNFSSPQYSAHKLPKEVVEAS 384
                 *******9988777888899999*******.88888888*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2988.48
//
Query:       CCE26698.1  [L=372]
Description: uncharacterized protein CPUR_00167 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-17   61.2   9.2    1.1e-16   60.5   9.2    1.3  1  DUF3716   Protein of unknown function (DUF3716)


Domain annotation for each model (and alignments):
>> DUF3716  Protein of unknown function (DUF3716)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   9.2   6.4e-21   1.1e-16       1      59 []     181     234 ..     181     234 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 6.4e-21
     DUF3716   1 AlliqltGeeapepCtrCrrgkgpFeeCvvveasekakllkgaCanClygkqgskCslr 59 
                 All+++tGe ap++C++Crrg+gp+++Cvv+     ++++ g+C+nC+++++gs+C+++
  CCE26698.1 181 ALLAHVTGEVAPRSCKNCRRGHGPWTQCVVY-----EGQMCGSCTNCWFNASGSRCTFH 234
                 89*****************************.....9********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.53
# Mc/sec: 2132.18
//
Query:       CCE26699.1  [L=371]
Description: probable G protein alpha chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-119  399.8   3.0   1.4e-119  399.4   3.0    1.2  1  G-alpha   G-protein alpha subunit
    5.8e-12   45.4   1.4    2.9e-10   39.9   0.1    2.8  2  Arf       ADP-ribosylation factor family
    9.2e-05   22.2   0.0    0.00039   20.2   0.0    1.9  2  zf-CHC2   CHC2 zinc finger


Domain annotation for each model (and alignments):
>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  399.4   3.0  2.4e-123  1.4e-119       2     354 .]      14     360 ..      13     360 .. 0.97

  Alignments for each domain:
  == domain 1  score: 399.4 bits;  conditional E-value: 2.4e-123
                 XXXXXXXXXXXXXXXXXXE..EE................EEEEEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT.. CS
     G-alpha   2 rtssaidkslkaerkarkkkrev................kllllGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrsiktilealeslese 84 
                  ++++i+++lk++++ ++++ ++                ++l  G++eSGKsTilkq+kl++++g+s++e+++++++i++n+v+s++ ilea+esle +
  CCE26699.1  14 ARNEEIENQLKRDKMMQRNEIKMlllaavtirhvvlyidQILSTGAGESGKSTILKQMKLIHEGGYSRDERESFKEIIFSNTVQSMRVILEAMESLELP 112
                 6899**********99999555589**********************************************************************9999 PP

                 .....HHHC-SS-SCCCS-HCHHHH..........HHCCHHC-HCHHHHHHHHCCSHHHHHHHCCGCCTT--TTHHHHHCTHHHHCSTT----CHHHHC CS
     G-alpha  85 lsesfelqelkerldplkkveasliaklssateeeqeiefnpraevgedikaLwndpgiqelyerrnkiklednaeyFlddleritspdYlptddDilk 183
                 l    e+q  + +++ ++   a++           + ++++p  evg +i+aLw+d g+qe+++r+++++l+d+a+y++d+++ri++p+Y+p+d+D+l+
  CCE26699.1 113 L----EDQRMEYHVQTIFMQPAQI-----------EGEVLPP--EVGGAIEALWKDRGVQECFKRSREYQLNDSARYYFDNITRIATPEYMPNDQDVLR 194
                 9....9************999998...........8999999..******************************************************* PP

                 S-----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHHH CS
     G-alpha 184 arlktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlDil 282
                 +r+kt+Gi+et+f ++ +l++r++dvgGqrserkkW+++f++v++i+Flv++se+dq+l+ede+vnr++e+l+lF++icn++++ +t+iiLflnK+D +
  CCE26699.1 195 SRVKTTGITETTFIIG-DLTYRMFDVGGQRSERKKWIHCFENVTTILFLVAISEYDQLLFEDETVNRMQEALTLFDSICNSRWFIKTSIILFLNKIDRF 292
                 ***************9.********************************************************************************** PP

                 HHHCCCS-GGGCCTT--H.CCHHHHHHHHHHHHHHCCCCCCESGGSCEEEEEE-TT-HHHHHHHHHHHHHHH CS
     G-alpha 283 eeKlkkgklskyfpsyegrkndlesvlkylrnkFeeihkeksnnrrkiythftsatdtkevqkviesvrdti 354
                 +eKl  +++++yfp+yeg ++d+  +++y+ n+F+++++    ++++iythft+atdt++++ v+++v+d+i
  CCE26699.1 293 KEKLPVSPMKNYFPDYEG-GDDYAAACDYILNRFVSLNQ---HETKQIYTHFTCATDTTQIRFVMAAVNDII 360
                 *****************9.******************87...66779**********************997 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.1    0.0073        43      16      35 ..      53      72 ..      44      77 .. 0.88
   2 !   39.9   0.1   4.8e-14   2.9e-10      40     128 ..     194     292 ..     185     303 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0073
                EEEEEESTTSSHHHHHHHHH CS
         Arf 16 rilllGLDnaGKtTilkklk 35
                +il  G  ++GK+Tilk++k
  CCE26699.1 53 QILSTGAGESGKSTILKQMK 72
                578889999********997 PP

  == domain 2  score: 39.9 bits;  conditional E-value: 4.8e-14
                 EECSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CT..........THHHHHHHHHHHCTSGCCTTSEEEEEEE-TTST CS
         Arf  40 vttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadre..........RleeakeeLkalleeeelkevallvlaNKqDlp 128
                  + v T+g +  +  i +l+++++DvGGq++ R+ W + fe++++++f+v  ++ +          R++ea + ++++ +++   +  ++++ NK+D  
  CCE26699.1 194 RSRVKTTGITETTFIIGDLTYRMFDVGGQRSERKKWIHCFENVTTILFLVAISEYDqllfedetvnRMQEALTLFDSICNSRWFIKTSIILFLNKIDRF 292
                 45678999999***************************************87654323333344459******************************75 PP

>> zf-CHC2  CHC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.37   2.2e+03      50      79 ..     225     254 ..     222     267 .. 0.61
   2 !   20.2   0.0   6.6e-08   0.00039      21      73 ..     303     355 ..     286     365 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.37
     zf-CHC2  50 pekqfyyCfgCgagGdaikFlmeieklsfv 79 
                 ++k+  +Cf   ++   +  ++e+++l f+
  CCE26699.1 225 ERKKWIHCFENVTTILFLVAISEYDQLLFE 254
                 678888888655544444445556666665 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 6.6e-08
     zf-CHC2  21 eyvkLkkkgkdyvalCPFHeektpsftvspekqfyyCfgCgagGdaikFlmei 73 
                 +y      g+dy a C +  ++  s++ +++kq+y  f+C +    i+F+m  
  CCE26699.1 303 NYFPDYEGGDDYAAACDYILNRFVSLNQHETKQIYTHFTCATDTTQIRFVMAA 355
                 5555566799****************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2634.24
//
Query:       CCE26700.1  [L=485]
Description: related to nuclear WD protein PRL1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-13   50.7  13.9    3.3e-13   49.8  13.9    1.5  1  DUF1771   Domain of unknown function (DUF1771)
    2.5e-10   40.5   0.4    9.4e-10   38.7   0.4    2.1  1  Smr       Smr domain
  ------ inclusion threshold ------
       0.17   12.3   0.5       0.59   10.6   0.0    2.0  2  DUF2663   Protein of unknown function (DUF2663)
        2.6    8.3   0.0        2.6    8.3   0.0    3.4  4  HemY_N    HemY protein N-terminus


Domain annotation for each model (and alignments):
>> DUF1771  Domain of unknown function (DUF1771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8  13.9   7.4e-17   3.3e-13       1      64 []     254     317 ..     254     317 .. 1.00

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 7.4e-17
     DUF1771   1 YerlRaeAdeharkrnelfekAaeAyrrGdgaaAkelseqGkehgekmeeanreAaeaIfeerN 64 
                 Y+rlR++A+ + +k ++++++++eA+r++d++  +++s++ k+h +k + +nr+A e+If+e+N
  CCE26700.1 254 YDRLRDQARSENDKAHQASQRSQEAFRANDHEGSQKYSRESKQHYAKRDDYNRQACEYIFRENN 317
                 9**************************************************************9 PP

>> Smr  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.4   2.1e-13   9.4e-10       1      56 [.     327     384 ..     327     402 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 2.1e-13
                 EE-TT--HHHHHHHHHHHHHHHHHTT-SEEEEE--STTSTT..HCHHHHHHHHHHHCS CS
         Smr   1 lDLhglrraealnvletfldaasakglrsvevihGkGahag..vgvLrpavmgwLagk 56 
                 +DLhgl ++ea ++le+ ++a +a+g +++  i+GkG+h++  v +++p+v++  ++ 
  CCE26700.1 327 VDLHGLYVEEAERILEQRIRADQARGQEHLHAIVGKGNHSTghVQRIKPKVEELCQEL 384
                 8**************************************7779*********998775 PP

>> DUF2663  Protein of unknown function (DUF2663)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.5      0.86   3.8e+03      32      65 ..      86     124 ..      42     131 .. 0.55
   2 ?   10.6   0.0   0.00013      0.59      29      91 ..     195     260 ..     178     282 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.86
     DUF2663  32 lfliyvlik.....ssslssllsallessvlllllllva 65 
                 l+l+ +l       + +  ++l+ l +  + +l+l++v+
  CCE26700.1  86 LLLLSLLLRvfesiNRQGFVVLKPLYQRLIQILVLVAVI 124
                 222222211333233333445555555555555555555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00013
     DUF2663  29 vlllfliyvlik...ssslssllsallessvlllllllvallyvavkllkkKaeKaEkefhaLrce 91 
                 ++++ l+y         + ++ l ++l+  + l+++ ++ +l +++ l +  ++ aE+e++ Lr +
  CCE26700.1 195 FVIARLVYSCLTvfgGVTPNVWLYLFLGILTELIVMSMLEVLGFMLALHSADNDDAEREYDRLRDQ 260
                 3333333332224447788999999999999*********************************86 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.3      0.26   1.2e+03      27      45 ..      42      65 ..      39      73 .. 0.77
   2 ?   -0.9   1.4      0.43   1.9e+03      13      47 ..      66      99 ..      56     103 .. 0.57
   3 ?   -4.1   0.4         4   1.8e+04      19      32 ..     152     165 ..     147     172 .. 0.46
   4 ?    8.3   0.0   0.00058       2.6      15      88 ..     214     297 ..     210     306 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.26
      HemY_N 27 fvllylllrllrlllrl.....pa 45
                f++l++l+r++++ +rl     p+
  CCE26700.1 42 FLALLALWRIVSFSIRLalvndPT 65
                7899*********99995555555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.43
      HemY_N 13 etslvvavlllvllfvllylllrllrlllrlparv 47
                +tsl++a l+l   + l  lll ll+lllr+ +++
  CCE26700.1 66 NTSLWAAWLIL-NSVGLGPLLLLLLSLLLRVFESI 99
                57777776655.33444444455555555554444 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 4
      HemY_N  19 avlllvllfvllyl 32 
                 + + l++++++l++
  CCE26700.1 152 VGVGLMIAAIALLC 165
                 33334444443333 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.00058
      HemY_N  15 slvvavlllvllfvllylllrllrlllrl...........parvr..rwrrrrrerkarealseGlialaeGdfarAekaaakaakl 88 
                 ++++ ++l +l+ ++++ +l +l+++l+l                  r ++r+ ++ka++a ++   a+ + d + ++k  ++++++
  CCE26700.1 214 NVWLYLFLGILTELIVMSMLEVLGFMLALhsadnddaereY---DrlRDQARSENDKAHQASQRSQEAFRANDHEGSQKYSRESKQH 297
                 68999999999******************888877774422...333446788899*******************999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1742  (0.097161); expected 358.6 (0.02)
Passed bias filter:                      782  (0.0436165); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 3470.05
//
Query:       CCE26701.1  [L=383]
Description: related to KTI12 (TOT4) protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-70  237.9   0.0    2.4e-70  237.1   0.0    1.4  1  KTI12     Chromatin associated protein KTI12
    1.4e-05   25.3   0.1    2.6e-05   24.4   0.1    1.4  1  AAA_33    AAA domain
     0.0081   16.0   0.0       0.02   14.8   0.0    1.7  1  CPT       Chloramphenicol phosphotransferase-like protein
  ------ inclusion threshold ------
      0.052   12.8   0.0      0.082   12.2   0.0    1.3  1  6PF2K     6-phosphofructo-2-kinase
      0.064   13.3   0.0       0.22   11.6   0.0    1.9  1  AAA_14    AAA domain
       0.12   12.9   0.0       0.34   11.4   0.0    2.0  3  AAA_18    AAA domain


Domain annotation for each model (and alignments):
>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.1   0.0   8.1e-74   2.4e-70       1     272 []      35     376 ..      35     376 .. 0.90

  Alignments for each domain:
  == domain 1  score: 237.1 bits;  conditional E-value: 8.1e-74
                 E.EEEEE--TTSSHHHHHHHHHHHHHH.......TT--EEEE-THHHH.............TTSSS--GGGHHHHHHHHHHHHHHHHTT.SEEEE-S-- CS
       KTI12   1 MpLvvltGlPssGKstrakeLakalee.......ekrsvvviddeslg............iekdsykdsakekalRsslrsavkrdLskekvVIvDsln 80 
                 MpL++++GlP sGKstrak+L ++l++        k++ ++i+d+sl             ++ ++   +++ek++R++l+ avkr Ls +++VI+D ln
  CCE26701.1  35 MPLIIVSGLPTSGKSTRAKQLYDYLAAriaetepAKYRLHLISDDSLSisravydlspdtVRLHTRSANSSEKDARAALYGAVKRVLSDKDFVILDGLN 133
                 **********************************9************944444442222211122234568**************************** PP

                 -SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S....................................S-HHHHHHHHHH---TTSS-G CS
       KTI12  81 yikgfRYeLyciakaakttlcvvyvvapldvlvkwneereekee..................................yekelldaLiqRyeePdsknr 145
                 yikg+RY+L+c+aka +t++c++ v+++ d+++++neer +++                                   y++   d+L+ RyeeP+ ++r
  CCE26701.1 134 YIKGWRYQLHCEAKALRTPNCILRVACSVDQARQVNEERLQRATshandrgenadeqisqdddsnkeepqgaetgaepYSQSNWDNLVFRYEEPNPMTR 232
                 ****************************************99889****************************************************** PP

                 GGS-SEEEE.....TTS---HHHHHHHH..HHHHTS--SSSTT----.---HHHHHHHHHHHHHHHHHHH....HTT--HHH................. CS
       KTI12 146 WDsPlftvls....aeeklpldeilkal..iekkklkpnqatlskpl.aeanflqeLdketseivkeileaqksavaidkltlp.....gsseslelpa 232
                 WDsPlf++l     a+ k  ++++++a+    +k  kpnq+t+++   a++++l++L++et++ivk ile q+    ++++++p     ++ ++++lp+
  CCE26701.1 233 WDSPLFAILWddseAQTKRTFNDLWDAMagEGRKIVKPNQSTIQRGRdASGDYLYVLERETQDIVKRILE-QQGEDGGGEVRIPlnasgKEDLVVDLPS 330
                 *********9555555566678888888744567789*****9987659*********************.88899999***99888777888999999 PP

                 .....HHHHHHHHHHHHHHHT......TSSS--HHHHHHHHHHHHH CS
       KTI12 233 k.kltlaeLsrlrrqFvklnk.....aklenvdeekiaklFvdyLn 272
                   kl l++L+rlrr Fv ln+     ++  n+  + + ++Fv+yLn
  CCE26701.1 331 GkKLALPQLQRLRRAFVGLNRggiglESVGNMASDGMREVFVRYLN 376
                 889********************9999999***************8 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   8.8e-09   2.6e-05       1     130 [.      37     184 ..      37     193 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 8.8e-09
      AAA_33   1 lvllvGlpGsGKstlaerllkklg............avllssdt..lrrrlfg....tdqqsktdytrvldrlyqilnelarkalsagrnvildatnls 81 
                 l+++ Glp sGKst a++l+  l+              l+s d+  ++r+++     t + +++  +  ++++++ l + ++++ls +  vild  n  
  CCE26701.1  37 LIIVSGLPTSGKSTRAKQLYDYLAariaetepakyrLHLISDDSlsISRAVYDlspdTVRLHTRSANSSEKDARAALYGAVKRVLSDKDFVILDGLNYI 135
                 799****************65554433344456664455555556555666664443222232232335566999************************ PP

      AAA_33  82 rrerarflklarrlgvpvrivvvetdeetlkeRlakRaangddrsevpe 130
                 +  r ++   a+ l  p  i+ v ++ +++++ +++R ++ ++ ++   
  CCE26701.1 136 KGWRYQLHCEAKALRTPNCILRVACSVDQARQVNEERLQRATSHANDRG 184
                 ********************************99999887655555444 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.5e-06      0.02       3     150 ..      37     192 ..      35     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.5e-06
                 EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGT....STTSEEEETTSEEE...-HHHHHHHHHHHHHHHHHHHTT-EEEEE..E-- CS
         CPT   3 iilLnGgsssGKsslaralqevldepwlhlgvDafvealppkrqd....eadglefeteleei...gpeldlllaalyeavaamaraGnnvivD..dvi 92 
                 +i+  G + sGKs+ a+ l + l++   + +  ++   l          +  +l+++t++ ++   +   + + aaly av+ ++     vi+D  ++i
  CCE26701.1  37 LIIVSGLPTSGKSTRAKQLYDYLAARIAETEPAKYRLHLISDDSLsisrAVYDLSPDTVRLHTrsaNSSEKDARAALYGAVKRVLSDKDFVILDglNYI 135
                 799********************9999999999998877665544344466788888887766655777788999*******************77777 PP

                 TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTTHHHHHTTGGGTT-- CS
         CPT  93 lekewlvdllrrllsgldvllVGvrcplevlerRelergdRepGlaalqaeavHagae 150
                  + +   ++  + l  ++  +  v c+++ +++ + er  R +  a+ + e++ ++++
  CCE26701.1 136 KGWRYQLHCEAKAL-RTPNCILRVACSVDQARQVNEERLQRATSHANDRGENADEQIS 192
                 77777999999999.67778889***************99998887777766666655 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.8e-05     0.082       7     134 ..      30     161 ..      24     197 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.8e-05
                 HHT..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--E.....EEEEHHHHHHHHHSS..---GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--S CS
       6PF2K   7 tnlknsklvivlvGLpargKtyiskkltrylkwlgvrt.....kvFnvgkyrreaska..lsdaeffrpdneealklreklalaalkdllaylneeegq 98 
                 +nl++ + +i++ GLp  gK++ +k+l  yl     +t     +   +++   ++s+a  + + + +r++ + a++  + +++a    +++ l+  + +
  CCE26701.1  30 NNLNTMP-LIIVSGLPTSGKSTRAKQLYDYLAARIAETepakyRLHLISDDSLSISRAvyDLSPDTVRLHTRSANSSEKDARAALYGAVKRVLS--DKD 125
                 4544444.56778******************955444411000333333333333333555555666666666665555544444445555555..345 PP

                 EEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE-- CS
       6PF2K  99 vaifDAtNttrerRklilefveennlkvlflesics 134
                   i D +N  +  R  +  +++  +    +l + cs
  CCE26701.1 126 FVILDGLNYIKGWRYQLHCEAKALRTPNCILRVACS 161
                 667777777777777777777777777777777665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.3e-05      0.22       3      83 ..      36     142 ..      34     175 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.3e-05
      AAA_14   3 kilvitGaRrvGKTtllkqlikell..vkkesilyinldderd.......................kkladpekllelileklke.............. 62 
                 ++++++G+  +GK+t +kql++ l   + + +   + l   +d                       +                 +              
  CCE26701.1  36 PLIIVSGLPTSGKSTRAKQLYDYLAarIAETEPAKYRLHLISDdslsisravydlspdtvrlhtrsA-----------------Nssekdaraalygav 117
                 5789****************98777885555555544444444334455554444444444333221.................012223334444445 PP

      AAA_14  63 ....ekktylflDEiqevpewekal 83 
                     ++k +++lD   ++++w+  l
  CCE26701.1 118 krvlSDKDFVILDGLNYIKGWRYQL 142
                 5566688999999999999998766 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.34       1      33 [.      38      82 ..      38     192 .. 0.70
   2 ?   -3.0   0.0       3.3     1e+04      53      68 ..     290     305 ..     270     330 .. 0.60
   3 ?   -4.2   0.0         6   1.8e+04      47      68 ..     329     350 ..     316     361 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf............gvnlrdvak 33
                I+++G p +GK+t ak L + l+             + ++ d ++
  CCE26701.1 38 IIVSGLPTSGKSTRAKQLYDYLAAriaetepakyrlHLISDDSLS 82
                9*****************554422244445555555444444444 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.3
      AAA_18  53 dedkldklldaleens 68 
                 +++ +d + ++le++ 
  CCE26701.1 290 ERETQDIVKRILEQQG 305
                 3333444444444433 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 6
      AAA_18  47 deskrldedkldklldaleens 68 
                 ++ k+l  ++l++l +a+ + +
  CCE26701.1 329 PSGKKLALPQLQRLRRAFVGLN 350
                 4556666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.33s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 2530.06
//
Query:       CCE26702.1  [L=820]
Description: probable transitional endoplasmic reticulum ATPase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-98  325.7   0.0    1.1e-47  161.8   0.0    2.5  2  AAA              ATPase family associated with various cellul
    1.9e-23   82.0   2.8    7.5e-13   48.1   0.3    3.3  3  AAA_lid_3        AAA+ lid domain
    6.2e-18   64.8   0.3    2.4e-17   62.9   0.3    2.1  1  CDC48_N          Cell division protein 48 (CDC48), N-terminal
    3.1e-15   56.3   0.6    6.1e-06   26.1   0.0    4.2  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.1e-13   51.7   0.0    3.1e-07   30.7   0.0    2.8  2  AAA_2            AAA domain (Cdc48 subfamily)
    3.8e-13   50.2   0.0    0.00023   21.6   0.0    4.2  3  AAA_16           AAA ATPase domain
    2.8e-12   47.0   0.0    3.6e-05   24.0   0.0    2.9  2  AAA_33           AAA domain
    4.3e-12   46.2   0.3    3.5e-06   27.0   0.1    3.7  2  AAA_5            AAA domain (dynein-related subfamily)
    2.5e-09   37.5   0.5      0.029   14.7   0.1    3.9  2  AAA_22           AAA domain
    3.1e-09   36.5   0.1     0.0014   17.9   0.0    2.8  2  TIP49            TIP49 P-loop domain
    1.3e-07   31.3   0.4    4.3e-07   29.6   0.0    2.1  1  CDC48_2          Cell division protein 48 (CDC48), domain 2
    1.8e-07   31.7   0.0      0.027   15.0   0.0    2.8  2  AAA_18           AAA domain
      3e-07   30.0   0.4     0.0084   15.5   0.0    2.5  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    3.7e-07   30.0   0.0      0.019   14.7   0.0    2.7  2  IstB_IS21        IstB-like ATP binding protein
    5.7e-07   29.6   0.0     0.0076   16.3   0.0    2.8  2  AAA_14           AAA domain
    6.8e-07   29.6   0.0      0.036   14.5   0.0    2.8  2  RNA_helicase     RNA helicase
    1.1e-06   28.2   0.3       0.26   10.6   0.0    3.5  3  ATPase           KaiC
    1.3e-06   28.1   0.1      0.019   14.5   0.0    2.9  2  AAA_7            P-loop containing dynein motor region
    3.5e-06   26.7   3.7       0.28   10.7   0.1    4.3  5  AAA_25           AAA domain
    4.1e-06   26.7   0.0      0.082   12.6   0.0    2.8  2  AAA_24           AAA domain
    4.2e-06   26.7   0.3    4.2e-05   23.5   0.1    2.4  2  Vps4_C           Vps4 C terminal oligomerisation domain
    9.1e-06   25.0   0.0      0.051   12.7   0.0    2.2  2  Parvo_NS1        Parvovirus non-structural protein NS1
    1.5e-05   24.3   0.0      0.026   13.7   0.0    2.6  2  DUF815           Protein of unknown function (DUF815)
    1.5e-05   25.3   0.0       0.15   12.3   0.0    2.8  2  AAA_28           AAA domain
    2.5e-05   24.0   0.0       0.25   11.0   0.0    3.3  2  Sigma54_activat  Sigma-54 interaction domain
    3.9e-05   24.2   0.0       0.33   11.5   0.0    3.4  2  ABC_tran         ABC transporter
    4.1e-05   23.5   0.0       0.18   11.6   0.0    3.0  3  Bac_DnaA         Bacterial dnaA  protein
      7e-05   22.8   0.0       0.45   10.5   0.0    2.6  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00014   21.9   0.1       0.18   11.7   0.0    2.9  3  NACHT            NACHT domain
    0.00017   21.6   0.0      0.045   13.8   0.0    2.5  2  ResIII           Type III restriction enzyme, res subunit
     0.0002   21.8   0.0       0.59   10.6   0.0    3.0  2  AAA_17           AAA domain
     0.0002   21.2   0.0        0.7    9.8   0.0    2.7  2  AAA_3            ATPase family associated with various cellul
    0.00023   20.7   0.3        0.7    9.3   0.0    2.6  2  PhoH             PhoH-like protein
    0.00038   20.2   0.2       0.98    9.1   0.0    2.5  2  AAA_30           AAA domain
    0.00047   20.0   0.0        1.3    8.8   0.0    2.5  2  AAA_11           AAA domain
    0.00051   20.0   0.0        5.8    6.7   0.0    3.7  4  ATPase_2         ATPase domain predominantly from Archaea
     0.0011   19.3   0.3        5.6    7.3   0.0    3.5  3  AAA_19           AAA domain
      0.002   17.4   0.0        1.7    7.8   0.0    2.3  2  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0038   17.3   0.0       0.55   10.3   0.0    2.6  2  Sigma54_activ_2  Sigma-54 interaction domain
      0.005   16.8   0.5        2.5    8.0   0.0    4.0  3  NTPase_1         NTPase
     0.0055   15.9   0.0        1.8    7.7   0.0    2.5  2  NB-ARC           NB-ARC domain
     0.0079   16.0   0.0       0.33   10.7   0.0    2.4  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
  ------ inclusion threshold ------
      0.013   14.9   0.0        1.8    7.9   0.0    2.3  2  IPT              Isopentenyl transferase
      0.018   14.3   0.6        8.1    5.7   0.0    3.1  3  Zeta_toxin       Zeta toxin
      0.028   13.7   0.5        1.1    8.4   0.0    3.2  4  KAP_NTPase       KAP family P-loop domain
      0.044   12.7   0.0        7.6    5.4   0.0    2.4  2  AAA_6            Hydrolytic ATP binding site of dynein motor 
      0.054   13.2   0.0         10    5.8   0.0    2.7  2  Cytidylate_kin   Cytidylate kinase
      0.064   13.4   0.0        3.3    7.8   0.0    2.4  2  Cytidylate_kin2  Cytidylate kinase-like family
      0.075   12.7   0.0          3    7.5   0.0    2.9  2  Zot              Zonular occludens toxin (Zot)
      0.095   11.6   0.0         11    4.8   0.0    2.2  2  AFG1_ATPase      AFG1-like ATPase
       0.11   12.5   1.5        0.4   10.7   1.5    1.9  1  Sec2p            GDP/GTP exchange factor Sec2p
       0.13   11.7   0.0       0.53    9.7   0.0    1.8  2  UFD1             Ubiquitin fusion degradation protein UFD1


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.8   0.0   3.2e-50   1.1e-47       1     131 [.     257     386 ..     257     387 .. 0.98
   2 !  161.5   0.0   3.9e-50   1.3e-47       1     132 []     531     664 ..     531     664 .. 0.97

  Alignments for each domain:
  == domain 1  score: 161.8 bits;  conditional E-value: 3.2e-50
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vllyGppGtGKTl+a+ava+e+g+ f+ i+g+e++sk+ gese+++r+ f+ea++++ p i+fiDEid++a++r++++ e+e+rvv+qLlt +dg+k +
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNS-PAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKAR 354
                 79******************************************************9.****************************************7 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                  s+v+v++atnrp+++dpal+r gRfdr++ i+
  CCE26702.1 355 -SNVVVMAATNRPNSIDPALRRfGRFDREVDIG 386
                 .66*************************99886 PP

  == domain 2  score: 161.5 bits;  conditional E-value: 3.9e-50
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vl+yGppGtGKT+lakava+e+ ++f++++g+ells+++gese++ir++f++a++ a p+i+f+DE+d++ak+r    g++ + ++rvvnqLlte+dg+
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAA-PCIVFLDELDSIAKARggsVGDAGGASDRVVNQLLTEMDGM 628
                 79******************************************************9.****************987778999**************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 ++k++ v+vigatnrp++ldpal r gR+d+ i+++l
  CCE26702.1 629 TSKKN-VFVIGATNRPEQLDPALCRpGRLDSLIYVPL 664
                 **755.***************************9985 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       8.1   2.8e+03      15      20 ..      18      23 ..      18      24 .. 0.89
   2 !   48.1   0.3   2.2e-15   7.5e-13       1      40 [.     409     448 ..     409     469 .. 0.92
   3 !   32.5   0.1   1.5e-10   5.3e-08       1      36 [.     686     721 ..     686     757 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 8.1
   AAA_lid_3 15 SGADla 20
                SGAD++
  CCE26702.1 18 SGADIK 23
                9****7 PP

  == domain 2  score: 48.1 bits;  conditional E-value: 2.2e-15
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitm 40 
                 dvdl+++A++T+Gy+G D aalc eAa+  +r++++ i+ 
  CCE26702.1 409 DVDLEQIASETHGYVGSDVAALCSEAAMQQIREKMDLIDL 448
                 9*********************************998764 PP

  == domain 3  score: 32.5 bits;  conditional E-value: 1.5e-10
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgik 36 
                 dvdl  +A +T+G+SGADl  + ++A+  A++++i 
  CCE26702.1 686 DVDLGYIATKTHGFSGADLGFITQRAVKIAIKESIG 721
                 9********************************764 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.3   6.9e-20   2.4e-17       1      84 [.      41     122 ..      41     124 .. 0.94

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 6.9e-20
                 CEEEECCS.S-CSSTTEEEE-HHHHHHHTS-TTSEEEEEC.CCC.EEEEEEEBSTTSTTTTEEEE-HHHHHHHT--TTEEEEEEEE- CS
     CDC48_N   1 rLrVaeap.qedvgrgivridpedmeelglepgdvveieg.krk.TvaivwpaepedegkgiIrmdgvtRknagvsiGdkVtVrkae 84 
                 +L V++a  +   +++i+++++++m++l+l++gd+v ++g krk Tv iv+++e+ d+  g+ r+++v+R+n++v+ Gd +t+ ++ 
  CCE26702.1  41 QLMVTDAVnD---DNSIIALSEATMDALQLFRGDTVLVRGkKRKdTVLIVLADEELDD--GSARINRVVRHNLRVKHGDMITILPCP 122
                 5889999877...9**************************9999**********9966..***********************9885 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.44   1.5e+02      58     123 ..      11      80 ..       7      90 .. 0.70
   2 !   26.1   0.0   1.8e-08   6.1e-06      36      99 ..     257     328 ..     251     378 .. 0.79
   3 !   22.7   0.0   1.9e-07   6.4e-05      36      69 ..     531     564 ..     524     606 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.44
      RuvB_N  58 gvklkitsgPvlekagdla.alltnle.ekdvlfideihrlsrav..eevlysamedfrldivigkGpsa 123
                 +v+l  tsg  ++++ d a a+l++ + +++++  d +   ++ +   e    a++ fr d v+ +G+  
  CCE26702.1  11 KVNLTDTSGADIKHEDDTAtAILKKKKkPNQLMVTDAVNDDNSIIalSEATMDALQLFRGDTVLVRGKKR 80 
                 78999**********9986378876551566777788876665432257777777777777777777665 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 1.8e-08
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvl......ekagdlaalltnleek..dvlfideihrlsra 99 
                 vllyGpPG Gkt +a+ +a+e g+ +    gP +      e +++l   + + e++   ++fidei  ++++
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEImskmagESESNLRKAFEEAEKNspAIIFIDEIDSIAPK 328
                 9*******************************8833222223445665565555542259******988766 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 1.9e-07
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvl 69 
                 vl+yGpPG Gkt lak +a+e  +++ +  gP l
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANECAANFISVKGPEL 564
                 9******************************987 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   8.9e-10   3.1e-07       6     109 ..     257     354 ..     252     365 .. 0.83
   2 !   17.9   0.0   7.5e-06    0.0026       6     105 ..     531     627 ..     526     634 .. 0.73

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 8.9e-10
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG----.---------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk.essgadvSregVqrdLLq 101
                 +ll gp g+Gkt++a+a+a+   +     +  ++  e++     +   +++   +++  +ae++   i+++DEid i+pk ++++ +v r  V+  LL 
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANETGA----FFFLINGPEIMS----KMAGESESNLRKAFEEAEKNSpaIIFIDEIDSIAPKrDKTNGEVER-RVVSQLLT 346
                 6899*****************995....99**********....77777777777777777777778*************5555666655.6888999* PP

                 HHH--EE- CS
       AAA_2 102 ileggtlt 109
                 +++g +++
  CCE26702.1 347 LMDGMKAR 354
                 ***97765 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 7.5e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----...---------HHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk...essgadvSregVqrdL 99 
                 +l+ gp g+Gkt+laka+a+   +    ++i +   ell     e+e+ +     ++    +a+   iv+lDE+d i++    +   a   ++ V++ L
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANECAA----NFISVKGPELLSmwFGESESNIRDIFDKA----RAAAPCIVFLDELDSIAKArggSVGDAGGASDRVVNQL 621
                 799*******************95....99999999999944344444444444333....334456************98543334444567899999 PP

                 HHHHH- CS
       AAA_2 100 Lqileg 105
                 L  ++g
  CCE26702.1 622 LTEMDG 627
                 988877 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.6e-06    0.0019      21      50 ..     251     277 ..     226     292 .. 0.77
   2 ?    3.0   0.0      0.35   1.2e+02     123     169 ..     302     359 ..     286     360 .. 0.64
   3 !   21.6   0.0   6.7e-07   0.00023      25     125 ..     529     624 ..     521     637 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.6e-06
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralek 50 
                    p+ vll+G++G+GK+ ++r++++   +
  CCE26702.1 251 IKPPRGVLLYGPPGTGKTLMARAVAN---E 277
                 44469******************996...3 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.35
      AAA_16 123 lkrllallsrderplvlvlDdlq...........wadeaslqllaaLlrllesk.pllv 169
                 l+++++ +++  +p ++++D+++            ++    + l +L++ ++++ +++v
  CCE26702.1 302 LRKAFEEAEK-NSPAIIFIDEIDsiapkrdktngEVERRVVSQLLTLMDGMKARsNVVV 359
                 4555566667.788*********666555554444444555555666666666556655 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 6.7e-07
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesa.eleawrekleeala....avpelagaeasr 118
                 + vl++G++G+GK+ l+++++++  ++   f++ k  +l     +s+ +   ++ + +r++ d+a++a     + ++l++ ++    +v+++ ga+ + 
  CCE26702.1 529 RGVLFYGPPGTGKTMLAKAVANECAAN---FISVKGPEL-----LSM-WFGESE-SNIRDIFDKARAAaPCIVFLDELDSIAKarggSVGDAGGASDRV 617
                 89********************99999...999999999.....444.444423.66777777744430333333333333335554444444444455 PP

      AAA_16 119 llellkr 125
                 +++ll++
  CCE26702.1 618 VNQLLTE 624
                 5555554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0     1e-07   3.6e-05       2      93 ..     257     377 ..     257     418 .. 0.70
   2 !   19.7   0.0   2.1e-06   0.00074       2      78 ..     531     611 ..     531     645 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1e-07
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt............................dytrvldrlyqilnelarkalsag 70 
                 vll G+pG+GK+  a+ +++++g  ++l++ ++++++++g+ + +++                               +v+ r+  +l  l  + ++a+
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANETGafFFLINGPEIMSKMAGESESNLRkafeeaeknspaiifideidsiapkrdkTNGEVERRVVSQLLTLM-DGMKAR 354
                 7899********************999************96555554555566666666777777777777653322235555555554444.456666 PP

      AAA_33  71 rnvildatnlsrrerarflklar 93 
                  nv++ a   +++  +  l+ + 
  CCE26702.1 355 SNVVVMAATNRPNSIDPALRRFG 377
                 66666555555555555555555 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 2.1e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt...dytrvldrlyqilnelarkalsagrnvildat 78 
                 vl+ G+pG+GK+ la+ ++++ +  ++ +  ++l+++ fg+ + +++   d +r++  ++ +l + +++ ++a+++ + da+
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANECAanFISVKGPELLSMWFGESESNIRdifDKARAAAPCIVFL-DELDSIAKARGGSVGDAG 611
                 799*****************9998888899999**9999977776665555566667777777.555556666665555555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1     1e-08   3.5e-06       1     136 [.     256     375 ..     256     377 .. 0.78
   2 !   14.2   0.0   9.2e-05     0.032       2      33 ..     531     562 ..     530     652 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.....G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.....egeilvlDEveraesevlnsLlslleerrl 94 
                 +vlL GppGtgK+ +a+ +a  +++ ++ +++++ +++     + ++             +a++     +++i+++DE++ + ++  ++ +   e+r +
  CCE26702.1 256 GVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNL------------RKAFEeaeknSPAIIFIDEIDSIAPKR-DKTNGEVERRVV 341
                 59********************************9987554444444............33333333789**********999874.667777777777 PP

                 E..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  95 lleeggelvkaknddllerfrviatanpldrslnelspalrs 136
                 +  ++ +l++  +  + +++ v+a++n+++    +++palr+
  CCE26702.1 342 S--QLLTLMDGMK--ARSNVVVMAATNRPN----SIDPALRR 375
                 7..7777776655..344499999999998....99999986 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 9.2e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqlt 33 
                 vl  GppGtgK++la+ +a    +++  v ++
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANECAANFISVKGP 562
                 899*************9998777666666555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   8.3e-05     0.029       8      43 ..     257     283 ..     252     364 .. 0.73
   2 !   14.6   0.0   8.4e-05     0.029       9      29 ..     532     552 ..     527     586 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.3e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv 43 
                 ++++G++GtGKT+ +r ++++          ++ ++
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANET---------GAFFF 283
                 689****************997.........44444 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 8.4e-05
      AAA_22   9 vvtGesGtGKTtllrrlleql 29 
                 + +G++GtGKT+l++ ++++ 
  CCE26702.1 532 LFYGPPGTGKTMLAKAVANEC 552
                 679**************9985 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     4e-06    0.0014      51     107 ..     255     306 ..     245     360 .. 0.80
   2 !   15.3   0.0   2.4e-05    0.0084      50      97 ..     528     573 ..     520     583 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqalrksi 107
                 r+vLl Gp+gtGkt +a a+++e g    f  ++g e+ s     +e    +lrk+ 
  CCE26702.1 255 RGVLLYGPPGTGKTLMARAVANETG--AFFFLINGPEIMSKMAGESES---NLRKAF 306
                 89*********************99..78999*******998887774...455554 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkkte 97 
                  r+vL+ Gp+gtGkt la a+++e +    f++++g e+ s+    +e
  CCE26702.1 528 SRGVLFYGPPGTGKTMLAKAVANECA--ANFISVKGPELLSMWFGESE 573
                 599*********************98..67999999999987665555 PP

>> CDC48_2  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.2e-09   4.3e-07       2      63 ..     142     206 ..     141     207 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.2e-09
                 .SCCCCH.HHHCCCTT..EEE-TTEEEEECCTCCCEEEEEEEECCCCSCEEECTSCCEEESTTCC CS
     CDC48_2   2 idgdema.ylkrqFlg..rpvtkGdlvvfefkgqeiklvVvstePkgpvgitetTeielgtkpve 63 
                 i g +++  l  +F    rpv +Gdl+ ++  +++++++Vv+++P +  ++  +T i+++ +p e
  CCE26702.1 142 ITGSLFDvFLAPYFREayRPVRQGDLFIVRGGMRQVEFKVVEVDPPEYGIVAQDTVIHCEGDPIE 206
                 567777888888998889******************************************99976 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   0.00018     0.064       1      25 [.     257     295 ..     257     365 .. 0.61
   2 !   15.0   0.0   7.7e-05     0.027       1      34 [.     531     582 ..     531     625 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00018
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.............g 25 
                 +ll G+pG+GKt +a+++++++ +f              
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANETgAFfflingpeimskmA 295
                 799****************99855576665533333330 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 7.7e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.................gvnlrdvake 34 
                 +l  G+pG+GKt lak++++++ ++                   n+rd++ +
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANECaANfisvkgpellsmwfgesESNIRDIFDK 582
                 6789****************99544677776666666666666666666655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   0.00028     0.097      25      42 ..     257     274 ..     249     278 .. 0.90
   2 !   15.5   0.0   2.4e-05    0.0084      24      43 ..     530     549 ..     517     554 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00028
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                   +ll+GppG+GKt++a+++
    CCE26702.1 257 VLLYGPPGTGKTLMARAV 274
                   89*************987 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2.4e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrlp 43 
                    +l++GppG+GKtmlak+++
    CCE26702.1 530 GVLFYGPPGTGKTMLAKAVA 549
                   589*************9875 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00028     0.097      48      70 ..     255     277 ..     244     358 .. 0.82
   2 !   14.7   0.0   5.6e-05     0.019      48      78 ..     529     559 ..     524     564 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00028
   IstB_IS21  48 enivllGpsGvGKshlaialgve 70 
                  +++l Gp+G+GK+ +a a++ e
  CCE26702.1 255 RGVLLYGPPGTGKTLMARAVANE 277
                 5799***************9876 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 5.6e-05
   IstB_IS21  48 enivllGpsGvGKshlaialgveavraglsv 78 
                  ++++ Gp+G+GK+ la a++ e +++ +sv
  CCE26702.1 529 RGVLFYGPPGTGKTMLAKAVANECAANFISV 559
                 57899****************9988776665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.2e-05    0.0076       5      78 ..     257     327 ..     254     367 .. 0.74
   2 !   10.2   0.0    0.0017      0.59       5      78 ..     531     601 ..     528     644 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.2e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.kllelileklkeekktylflDEiqevpe 78 
                 +++ G+  +GKT +++ +++e       ++ in  +   k++ ++e +l +++ e  +++   ++f+DEi  +  
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANETG---AFFFLINGPEIMSKMAGESEsNLRKAFEEA-EKNSPAIIFIDEIDSIAP 327
                 7899***************9998...888999999988887777662444555554.555999*******99843 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0017
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpe 78 
                 ++  G+  +GKT+l+k +++e      +++ ++  +     + ++e++++ i++k+++    ++flDE   + +
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANECA---ANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCIVFLDELDSIAK 601
                 56789999**********98877...7777777666666556666666777777755558899*****988854 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00056      0.19       1      29 [.     257     285 ..     257     328 .. 0.83
   2 !   14.5   0.0    0.0001     0.036       1      34 [.     531     567 ..     531     596 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00056
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklk 29 
                   ++lyGp+g+GK+++a+ +a++    + l+
    CCE26702.1 257 VLLYGPPGTGKTLMARAVANETGAFFFLI 285
                   689**************999877665444 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 0.0001
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl...klkkkdsv 34 
                   +++yGp+g+GK++lak +a++ + ++   k ++  s+
    CCE26702.1 531 VLFYGPPGTGKTMLAKAVANECAANFisvKGPELLSM 567
                   689****************999977655544444444 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00074      0.26      15      37 ..     250     272 ..     243     280 .. 0.86
   2 ?    4.4   0.0     0.059        20     121     157 ..     315     354 ..     283     376 .. 0.64
   3 !    9.0   0.0    0.0024      0.82      12      38 ..     521     547 ..     515     561 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00074
      ATPase  15 GipegrvvlitGepGtGKtifal 37 
                 Gi   r vl++G pGtGKt++a 
  CCE26702.1 250 GIKPPRGVLLYGPPGTGKTLMAR 272
                 8888899**************96 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.059
      ATPase 121 krvviDsitgl...ayeekeavaReilrqlvrvlkklgvT 157
                   + iD i+++     +++ +v R+ + ql++ + +++  
  CCE26702.1 315 AIIFIDEIDSIapkRDKTNGEVERRVVSQLLTLMDGMKAR 354
                 44555555555321566667789***********877654 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0024
      ATPase  12 lkgGipegrvvlitGepGtGKtifalq 38 
                 lk G+   r vl +G pGtGKt++a+ 
  CCE26702.1 521 LKFGLSPSRGVLFYGPPGTGKTMLAKA 547
                 4779999999**************986 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0     0.001      0.35      34      57 ..     255     278 ..     244     337 .. 0.82
   2 !   14.5   0.0   5.5e-05     0.019      24      62 ..     519     556 ..     516     602 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.001
       AAA_7  34 kpvllvGptGtGKtviikdllkkl 57 
                 + vll+Gp GtGKt++++ + ++ 
  CCE26702.1 255 RGVLLYGPPGTGKTLMARAVANET 278
                 679*************99988765 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 5.5e-05
       AAA_7  24 yllelllknkkpvllvGptGtGKtviikdllkkldkeky 62 
                 ++l+  l+ ++ vl++Gp GtGKt+++k + +++   ++
  CCE26702.1 519 MFLKFGLSPSRGVLFYGPPGTGKTMLAKAVANECA-ANF 556
                 567777888999****************9999887.444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       5.5   1.9e+03      68      97 ..      78     107 ..      55     137 .. 0.74
   2 !    7.7   0.1    0.0068       2.4      36      53 ..     257     274 ..     253     291 .. 0.88
   3 ?    5.3   0.0     0.036        13     130     177 ..     302     349 ..     289     362 .. 0.76
   4 !   10.7   0.1   0.00081      0.28      36      58 ..     531     553 ..     513     587 .. 0.79
   5 ?   -1.0   0.0       3.3   1.1e+03     131     172 ..     577     621 ..     555     638 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 5.5
      AAA_25  68 apeqgkVlyvsaEdsedelrrRlravgeal 97 
                 + ++ +Vl+v a++  d+   R+ +v +++
  CCE26702.1  78 KKRKDTVLIVLADEELDDGSARINRVVRHN 107
                 457889999999999999999999998776 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0068
      AAA_25  36 allaGapgtGKttlaldl 53 
                 +ll+G+pgtGKt +a  +
  CCE26702.1 257 VLLYGPPGTGKTLMARAV 274
                 69**********998655 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.036
      AAA_25 130 vdaleaaieevegvrlvviDplsralggdensnsdv.galvealeriar 177
                 +++  +++e+ + ++ + iD ++++ +   + n +v +++v++l  + +
  CCE26702.1 302 LRKAFEEAEK-NSPAIIFIDEIDSIAPKRDKTNGEVeRRVVSQLLTLMD 349
                 4455566677.66***************777788877****99988766 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.00081
      AAA_25  36 allaGapgtGKttlaldlalava 58 
                 +l++G+pgtGKt+la  +a ++a
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANECA 553
                 689************99998887 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 3.3
      AAA_25 131 daleaaieevegvrlvviDplsr...alggdensnsdv.galveal 172
                 +++ +++++ + +  v +D l++   a gg+  ++  + +++v++l
  CCE26702.1 577 RDIFDKARA-AAPCIVFLDELDSiakARGGSVGDAGGAsDRVVNQL 621
                 555566666.346666666555511155667777766667777765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00024     0.082       5      75 ..     257     323 ..     254     333 .. 0.62
   2 !   10.9   0.0   0.00082      0.28       5      22 ..     531     548 ..     528     603 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00024
      AAA_24   5 iliyGpsgiGKTtlakel..gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDtid 75 
                 +l+yGp+g+GKT +a+    +  ++f+ + +G   +    ++   s  +++++++e +++ +   +++iD id
  CCE26702.1 257 VLLYGPPGTGKTLMARAVanETGAFFF-LINGPEIMSKMAGE---SESNLRKAFEEAEKNSP--AIIFIDEID 323
                 79*************999753333333.33333333333333...55566666666555555..566666666 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00082
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l yGp+g+GKT+lak  
  CCE26702.1 531 VLFYGPPGTGKTMLAKAV 548
                 688************987 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       2.7   9.3e+02      12      44 ..     441     478 ..     431     480 .. 0.66
   2 !   23.5   0.1   1.2e-07   4.2e-05      26      59 ..     747     780 ..     727     781 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 2.7
      Vps4_C  12 iemtwmdip.....sdkllePpvtlkDflkalkkarpt 44 
                 ++m + d++     ++ l    vt++ f  al  + p+
  CCE26702.1 441 EKMDLIDLDedtidAEVLDSLGVTMENFRFALGVSNPS 478
                 56777776666662444445599999999999887776 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.2e-07
      Vps4_C  26 ePpvtlkDflkalkkarptVskeDLekheeFTke 59 
                  P++t  +f++a++ ar++Vs+ +++++e F ++
  CCE26702.1 747 VPELTKAHFEEAMQMARKSVSDVEIRRYEAFAQQ 780
                 469****************************997 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0011      0.37     117     140 ..     257     280 ..     251     286 .. 0.87
   2 !   12.7   0.0   0.00015     0.051     117     137 ..     531     551 ..     522     559 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavpl 140
                 v++yGp+ tGkt +a+a a+ +  
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANETGA 280
                 89****************997665 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00015
   Parvo_NS1 117 vwfyGpantGktnlaeaIaka 137
                 v+fyGp+ tGkt+la+a a+ 
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANE 551
                 89***************9985 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0045       1.6      52     116 ..     253     322 ..     214     373 .. 0.62
   2 !   13.7   0.0   7.5e-05     0.026      18      82 ..     484     557 ..     465     598 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0045
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeeg..Lrlievekedl.kelpklvellr..erperfilfvDDL 116
                 p + vLL+G  GtGK  + +a+ ne+ +    +   e+  +   ++ ++l ++ +  e++   i+f+D +
  CCE26702.1 253 PPRGVLLYGPPGTGKTLMARAVANETGAFFflINGPEIMSKMAgESESNLRKAFEeaEKNSPAIIFIDEI 322
                 56789******************99876543222223433322022233333333113344566776655 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 7.5e-05
      DUF815  18 pveevdevklddLvgidkqkealvente.......qfle.g.lpannvLLwGarGtGKSslvkallneyaeegL 82 
                 +v ev +v+++d+ g+++ k++l e ++        fl+ g  p++ vL++G  GtGK  l ka+ ne+a++ +
  CCE26702.1 484 AVVEVPNVRWEDIGGLEAVKQDLREQVQypvdhpeMFLKfGlSPSRGVLFYGPPGTGKTMLAKAVANECAANFI 557
                 4566778999999999999999988775222222257664236899**********************998764 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0022      0.75       2      36 ..     257     296 ..     256     323 .. 0.69
   2 !   12.3   0.0   0.00045      0.15       2      33 ..     531     567 ..     530     604 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0022
      AAA_28   2 ivitGgestGKTtlleaLaar.gyp..vv..pEaareile 36 
                 + + G+++tGKT +++a a++ g     +  pE++ ++  
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANEtGAFffLIngPEIMSKMAG 296
                 6799***************765433113345666655554 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00045
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvv..pEaare 33 
                 + + G+++tGKT l++a a++   ++  v  pE   +
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANEcaaNFISVkgPELLSM 567
                 6799***************665554433336666555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00072      0.25      23      64 ..     255     293 ..     241     376 .. 0.68
   2 !    8.7   0.0    0.0038       1.3      24      47 ..     530     553 ..     521     602 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00072
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TT CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaaipee 64 
                        vl+ G  GtGK+l+ara+ +++    + f  +n  +i ++
       CCE26702.1 255 RGVLLYGPPGTGKTLMARAVANET---GAFFFLINGPEIMSK 293
                      569****************97654...466666666655444 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0038
                      -EEEECSTTSSHHHHHHHHHHHST CS
  Sigma54_activat  24 svlitGesGtGKellaraiheask 47 
                       vl  G  GtGK++la+a+ ++  
       CCE26702.1 530 GVLFYGPPGTGKTMLAKAVANECA 553
                      599***************987665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0098       3.4       7     102 ..     250     453 ..     247     464 .. 0.63
   2 !   11.5   0.0   0.00096      0.33       5      45 ..     522     560 ..     520     635 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0098
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEE.EE..............................EETTCEGGGB-HHHCCHCEEEE-SS--S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxx.xx..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllkp....teG.ei..............................lldgkdlkeqeleslrkeigvlpqepql 70 
                  +k+ + v + G+ G+GK+ +++++a+++       +G ei                              ++d+   k+ +++  + e +v++q  +l
  CCE26702.1 250 GIKPPRGVLLYGPPGTGKTLMARAVANETGAffflINGpEImskmagesesnlrkafeeaeknspaiifidEIDSIAPKR-DKTNGEVERRVVSQLLTL 347
                 6777788999***********99999998765555222133666666667777776666666666666333333333333.555566666777777777 PP

                 -TTSBHHHH..........................................................................HHHTCHHHHHHHSTTG CS
                 xxxxxxxxx..........................................................................xxxxxxxxxxxxxxxx RF
    ABC_tran  71 fpeltvren..........................................................................esdeeiekalsklglk 95 
                  +++++r+n                                                                           s++ ++++++k++l+
  CCE26702.1 348 MDGMKARSNvvvmaatnrpnsidpalrrfgrfdrevdigvpdptgrleilqihtknmklgddvdleqiasethgyvgsdvaalCSEAAMQQIREKMDLI 446
                 777777777787777766666666666666666666666666666666666666666666666666665555555555555554445566666666666 PP

                 GTTCBGE CS
                 xxxxxxx RF
    ABC_tran  96 elkdtvv 102
                 +l+++++
  CCE26702.1 447 DLDEDTI 453
                 6666655 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00096
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagllkpteGeilld 45 
                 ++ l++++ v + G+ G+GK+ L+k++a++    +  i ++
  CCE26702.1 522 KFGLSPSRGVLFYGPPGTGKTMLAKAVANECA--ANFISVK 560
                 78999*********************998864..4455555 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       5.9     2e+03     166     189 ..      24      47 ..      19      52 .. 0.81
   2 !   11.6   0.0   0.00053      0.18      37     190 ..     257     410 ..     251     442 .. 0.69
   3 !    8.1   0.0    0.0061       2.1      37      64 ..     531     558 ..     526     569 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 5.9
                 --HHHHHHHHHHHHHHTT----TT CS
    Bac_DnaA 166 pdletrlailkkkieaeklevpee 189
                  + +t++ailkkk + ++l v++ 
  CCE26702.1  24 HEDDTATAILKKKKKPNQLMVTDA 47 
                 567899*******99998887765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00053
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-.SEEEEE-GGGGTT-H.HHHHH........HHHHHHH CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklrkv.DvLliDDiqflagke.ktqee........lfhtfna 125
                 +++yg+ G Gkt + +a++ne+      +    +++ e +++++   +++  ++f e  ++   ++ iD+i  +a k  kt+ e        l+++++ 
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANETG-----AFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSpAIIFIDEIDSIAPKRdKTNGEverrvvsqLLTLMDG 350
                 79**********99999998765.....5568899*********************99886516788*******9875244433112211114555555 PP

                 HHTTT-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTH CS
    Bac_DnaA 126 lleegkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeev 190
                 +   ++ vv+++   P++++    r+  rf++ +  di  pd   rl+il+ + +  ++++ ++v
  CCE26702.1 351 MKARSNVVVMAATNRPNSIDPALRRF-GRFDREV--DIGVPDPTGRLEILQIHTK--NMKLGDDV 410
                 555667799999999*9988766554.6888765..5666777888888864444..44444333 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0061
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSS CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenape 64 
                 +++yg+ G Gkt L ka++ne  +n+ +
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANECAANFIS 558
                 799*****************99988755 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0     0.003         1      21      44 ..     252     279 ..     224     289 .. 0.77
   2 !   10.5   0.0    0.0013      0.45      20      51 ..     529     562 ..     499     565 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.003
                 E....EEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  21 v....ilLeGdLGaGKTtlvrglakalg 44 
                      +lL+G+ G+GKT ++r++a++ g
  CCE26702.1 252 KpprgVLLYGPPGTGKTLMARAVANETG 279
                 044449*****************99877 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0013
                 EEEEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgve..evkSP 51 
                 + +l++G+ G+GKT+l++++a+++  +  +vk P
  CCE26702.1 529 RGVLFYGPPGTGKTMLAKAVANECAANfiSVKGP 562
                 3499******************998876677766 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.018         6       3      23 ..     257     277 ..     255     280 .. 0.88
   2 ?   -1.6   0.0       6.2   2.2e+03      80     127 ..     312     362 ..     291     376 .. 0.62
   3 !   11.7   0.0   0.00052      0.18       3      26 ..     531     554 ..     529     570 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.018
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 v+l G++G GKT +++ +a +
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANE 277
                 899************999875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 6.2
                 CCCEEEEEE-STT-SS-TCH............HHHHHCTTTTT--EEEEEE CS
       NACHT  80 perlLlilDglDelvtdlgq...kekqpvrtlLselirkkllpeasllltv 127
                    + + +D +D ++ + ++   + +++v   L +l+ +   +++ +++++
  CCE26702.1 312 NSPAIIFIDEIDSIAPKRDKtngEVERRVVSQLLTLMDGMKARSNVVVMAA 362
                 445556689999998877777774444444444477777555555554444 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00052
                 EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawae 26 
                 v+  G++G GKT+L++ +a + a+
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANECAA 554
                 7889**************998876 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   0.00013     0.045      22      85 ..     252     315 ..     225     355 .. 0.71
   2 ?    5.1   0.0     0.057        20      25      51 ..     529     555 ..     498     575 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00013
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG..........G CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke......i 85 
                 k  + +l+  + GtGKTl+a +++ +         f+fl+++ ++++++  e ++ l +a++e      +
  CCE26702.1 252 KPPRGVLLYGPPGTGKTLMARAVANETG------AFFFLINGPEIMSKMAGESESNLRKAFEEaeknspA 315
                 6777888999********9987777665......59**************88877777777663333332 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.057
                 SEEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII  25 krglikmaTGtGKTlvaaklierllkk 51 
                 + +l+  + GtGKT++a +++ +++ +
  CCE26702.1 529 RGVLFYGPPGTGKTMLAKAVANECAAN 555
                 567799999********9998887765 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0017      0.59       1      58 [.     260     318 ..     260     347 .. 0.68
   2 ?    7.8   0.0     0.012       4.1       1      25 [.     534     558 ..     534     607 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0017
                 EE-TTSSHHHHHHHHHHHHT..EEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekyg..fthlsaGdllreeakrgglakardemrklpleekkelq 58 
                 +G+PG GK+ +++ ++ + g  f  ++  +++ ++a ++++ + r+++++++++    + 
  CCE26702.1 260 YGPPGTGKTLMARAVANETGafFFLINGPEIMSKMAGESES-NLRKAFEEAEKNSPAIIF 318
                 7***************9997535556666666677666654.567777766655555444 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.012
                 EE-TTSSHHHHHHHHHHHHTEEEEE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthls 25 
                 +G+PG GK+ +++ ++ +    ++s
  CCE26702.1 534 YGPPGTGKTMLAKAVANECAANFIS 558
                 7*************99998666655 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0     0.002       0.7       2      48 ..     257     301 ..     256     369 .. 0.64
   2 !    8.5   0.0    0.0049       1.7       2      30 ..     531     559 ..     530     567 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.002
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfe 48 
                 vll g PG++ktl+++a+a+  ++ f  i   p+++ s + G +  +
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANETGAFFFLIN-GPEIM-SKMAGESESN 301
                 7999****************9998776664.56665.4455655444 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0049
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vl+ g PG++kt+l+ka+a+   ++f  +
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANECAANFISV 559
                 788999**************999998766 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0032       1.1      22      40 ..     257     275 ..     243     280 .. 0.87
   2 !    9.3   0.0     0.002       0.7      22      43 ..     531     552 ..     524     559 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0032
                 EEEE--TTSSTTHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavala 40 
                 v   Gp GtGKt++a a+a
  CCE26702.1 257 VLLYGPPGTGKTLMARAVA 275
                 6789***********9998 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.002
                 EEEE--TTSSTTHHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalavea 43 
                 v   Gp GtGKt+la a+a e 
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANEC 552
                 5678************999765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0044       1.5      21      40 ..     257     276 ..     244     280 .. 0.83
   2 !    9.1   0.0    0.0028      0.98      19      43 ..     529     553 ..     518     561 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0044
      AAA_30  21 avltGpAGtGKttalkalre 40 
                 ++l Gp+GtGKt + +a+++
  CCE26702.1 257 VLLYGPPGTGKTLMARAVAN 276
                 7899**********999865 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0028
      AAA_30  19 rvavltGpAGtGKttalkalreawe 43 
                 r ++  Gp+GtGKt++ ka+++  +
  CCE26702.1 529 RGVLFYGPPGTGKTMLAKAVANECA 553
                 567789************9987655 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0043       1.5      20      41 ..     257     278 ..     234     317 .. 0.81
   2 !    8.8   0.0    0.0037       1.3      16      41 ..     527     552 ..     513     593 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0043
      AAA_11  20 tliqGPPGtgKTktivellsql 41 
                 +l+ GPPGtgKT +  ++ ++ 
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANET 278
                 6999********8888777765 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0037
      AAA_11  16 eseitliqGPPGtgKTktivellsql 41 
                  s  +l+ GPPGtgKT    ++ ++ 
  CCE26702.1 527 PSRGVLFYGPPGTGKTMLAKAVANEC 552
                 5555899*********7776666655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.017       5.8      23      63 ..     257     293 ..     245     313 .. 0.69
   2 ?    1.5   0.0      0.69   2.4e+02     103     165 ..     299     363 ..     286     370 .. 0.63
   3 ?    6.5   0.0      0.02         7      23      43 ..     531     551 ..     524     560 .. 0.84
   4 ?   -1.7   0.0       6.7   2.3e+03     119     161 ..     585     637 ..     568     640 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.017
    ATPase_2  23 yfiYGpegsGKtaLlkeiienledkdkyviyyialreesis 63 
                 +++YGp g GKt + + ++++        +++i+  e+ ++
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANETG----AFFFLINGPEIMSK 293
                 789*********99998888763....34555555555554 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.69
    ATPase_2 103 fkaielllekikkkgkkiiiiiDelqklidlgln.....gaellvkeLlnliesltkekhlcvvicls 165
                 ++++ +++e+ +k+    ii+iDe+  +   + +      ++ +v++Ll+l++  +k +  +vv++++
  CCE26702.1 299 ESNLRKAFEEAEKN-SPAIIFIDEIDSIA-PKRDktngeVERRVVSQLLTLMDG-MKARSNVVVMAAT 363
                 45555555555555.3378999**99997.333334444457788888888887.5555555665555 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.02
    ATPase_2  23 yfiYGpegsGKtaLlkeiien 43 
                 ++ YGp g GKt L k ++++
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANE 551
                 678*************99987 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 6.7
    ATPase_2 119 k...iiiiiDelqklidlgln.........gaellvkeLlnliesltkekhlcvv 161
                      i+++Del  +   + +          +  +v++Ll+ ++  t++k+++v+
  CCE26702.1 585 AaapCIVFLDELDSIA--KARggsvgdaggASDRVVNQLLTEMDGMTSKKNVFVI 637
                 2334799999999999..6666677777766677888888888887777777665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1     0.019       6.7      12      30 ..     256     274 ..     250     283 .. 0.82
   2 ?   -1.2   0.0       6.7   2.3e+03      51      75 ..     432     456 ..     414     505 .. 0.77
   3 ?    7.3   0.0     0.016       5.6      10      34 ..     528     552 ..     523     583 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.019
      AAA_19  12 vllvtaGpGtGKTrvlkhi 30 
                  +l+ ++pGtGKT + +++
  CCE26702.1 256 GVLLYGPPGTGKTLMARAV 274
                 5899*********987766 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 6.7
      AAA_19  51 tgrAakelrerlaalgaeatTiHrl 75 
                  + A++++re+++ ++++ +Ti + 
  CCE26702.1 432 SEAAMQQIREKMDLIDLDEDTIDAE 456
                 5679999*****9999999988754 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.016
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivall 34 
                 ++ +l  ++pGtGKT + k++ +++
  CCE26702.1 528 SRGVLFYGPPGTGKTMLAKAVANEC 552
                 6678899********9988877665 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0048       1.7       4      45 ..     257     291 ..     254     341 .. 0.67
   2 !    7.4   0.0    0.0065       2.2       5      33 ..     532     553 ..     528     579 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0048
     DUF2075   4 vlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvl 45 
                 vl  G +GtGKt+++ ++++e         a +++ N+p+++
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANET-------GAFFFLINGPEIM 291
                 6789***********9999998.......4445555554443 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0065
     DUF2075   5 lVtGvaGtGKtvvllnllaeleddeeert 33 
                 l  G +GtGKt+++ ++++e+        
  CCE26702.1 532 LFYGPPGTGKTMLAKAVANEC-------A 553
                 6689***************99.......3 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0016      0.55      24      83 ..     257     327 ..     251     333 .. 0.65
   2 ?    4.1   0.0      0.14        47      24      46 ..     531     553 ..     526     603 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0016
                      EEEEEETT--HHHHHHCC--TTS-EE--SS....TTHHHH-H..........HHHHHHTTTSEEEEEE-TT--H CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwleifv....verlaklp..........ldlleqakggtLylkdiadlsk 83 
                      v+l G++G+gk+l+Ar+ +++ g    + +    + +                +  e+ +++++++ +i+++ +
       CCE26702.1 257 VLLYGPPGTGKTLMARAVANETGAFFFLINgpeiMSKM---AgesesnlrkaFEEAEKNSPAIIFIDEIDSIAP 327
                      9*******************999864433310003333...133334443333334445889999999988765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.14
                      EEEEEETT--HHHHHHCC--TTS CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsg 46 
                      v+  G++G+gk++ A++ +++ +
       CCE26702.1 531 VLFYGPPGTGKTMLAKAVANECA 553
                      8999************9988654 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.28        95       2      22 ..     257     277 ..     256     281 .. 0.86
   2 ?    0.3   0.0       1.7   5.9e+02      85     108 ..     302     326 ..     293     359 .. 0.69
   3 !    8.0   0.0    0.0074       2.5       6      32 ..     535     561 ..     531     564 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.28
                 EEEE--TTSSHHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlel 22 
                 v++ GppG+GKt + + v+++
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANE 277
                 6788********999988875 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.7
                 HHHHHHHHH.HHH-EEEE---STTG CS
    NTPase_1  85 alealrkal.seadviviDEiGkmE 108
                   +a+++a  +++ +i iDEi ++ 
  CCE26702.1 302 LRKAFEEAEkNSPAIIFIDEIDSIA 326
                 34445555434445******97665 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0074
                 --TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1   6 GppGvGKtTlvkkvlellkssgvkvgG 32 
                 GppG+GKt l k v+++++ + ++v+G
  CCE26702.1 535 GPPGTGKTMLAKAVANECAANFISVKG 561
                 9*****************999899988 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.026       8.8      23      43 ..     257     277 ..     250     282 .. 0.89
   2 !    7.7   0.0    0.0051       1.8      23      43 ..     531     551 ..     521     559 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.026
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 v l+G +G GKt +a+ + n+
  CCE26702.1 257 VLLYGPPGTGKTLMARAVANE 277
                 679*************99987 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0051
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 v ++G +G GKt lak + n+
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANE 551
                 678***************998 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.25        87       5      71 ..     261     322 ..     257     326 .. 0.64
   2 !   10.7   0.0   0.00095      0.33       5      70 ..     535     595 ..     531     600 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.25
  Viral_helicase1   5 GvpGcGKStlirkllrts..liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEy 71 
                      G pG GK+ + r ++++     + +n p  e+ ++ + +++++     ++f++a ++s    i+++DE+
       CCE26702.1 261 GPPGTGKTLMARAVANETgaFFFLINGP--EIMSKMAGESESNLR---KAFEEAEKNS--PAIIFIDEI 322
                      78***************77533333333..555555444444444...4445554444..569999997 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00095
  Viral_helicase1   5 GvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDE 70 
                      G pG GK+ l + +++++  ++ +++   ell++++ +++++    +d++  a+ +     i++lDE
       CCE26702.1 535 GPPGTGKTMLAKAVANECaANFISVKG-PELLSMWFGESESNIRDIFDKARAAAPC-----IVFLDE 595
                      78****************977777777.8*******99999999999998888764.....899998 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0052       1.8       5      27 ..     258     280 ..     255     287 .. 0.93
   2 ?    4.5   0.0     0.056        19       5      31 ..     532     558 ..     529     560 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0052
         IPT   5 lifGatttGKtaeaiklaketga 27 
                 l++G+ +tGKt +a ++a+etga
  CCE26702.1 258 LLYGPPGTGKTLMARAVANETGA 280
                 89*******************97 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.056
         IPT   5 lifGatttGKtaeaiklaketgapviv 31 
                 l +G+ +tGKt  a ++a+e +a  i+
  CCE26702.1 532 LFYGPPGTGKTMLAKAVANECAANFIS 558
                 78*****************99988876 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.035        12      15      40 ..     253     278 ..     245     285 .. 0.89
   2 ?    5.7   0.0     0.023       8.1      21      50 ..     533     560 ..     529     567 .. 0.85
   3 ?   -1.5   0.1       3.6   1.3e+03      69     114 ..     736     781 ..     723     785 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.035
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdel 40 
                  P  +ll G pG GK+ +a+++++e+
  CCE26702.1 253 PPRGVLLYGPPGTGKTLMARAVANET 278
                 57889*****************9986 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.023
  Zeta_toxin  21 lgGqpGAGKselaellkdelerqgnvvrld 50 
                   G pG GK+ la+++++e   + n++ ++
  CCE26702.1 533 FYGPPGTGKTMLAKAVANEC--AANFISVK 560
                 5699***************9..88888876 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.6
  Zeta_toxin  69 pkkaseltqkdaselvekllqeaiengyniivegtlrspdvvkkla 114
                 +++  e +++ + el++  ++ea+++ +  + +  +r ++ +++++
  CCE26702.1 736 EMEIDEEVEDPVPELTKAHFEEAMQMARKSVSDVEIRRYEAFAQQM 781
                 5555666666666777777777777777766666666666666555 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.4   4.9e+02      18      43 ..     252     277 ..     239     286 .. 0.78
   2 ?    8.4   0.0    0.0033       1.1     161     190 ..     299     330 ..     282     343 .. 0.70
   3 ?   -2.1   0.0       5.2   1.8e+03      23      44 ..     531     552 ..     516     563 .. 0.83
   4 ?    0.0   0.1       1.1   3.9e+02     161     187 ..     576     601 ..     569     610 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.4
  KAP_NTPase  18 atpivvgLygkWGsGKssllnklede 43 
                 ++p  v Lyg+ G+GK+ +   + +e
  CCE26702.1 252 KPPRGVLLYGPPGTGKTLMARAVANE 277
                 6777899**********997766655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0033
  KAP_NTPase 161 ladmektLda..lqkrlVvviDdLDrceteev 190
                  +++ k++++  ++++ +++iD++D++ +++ 
  CCE26702.1 299 ESNLRKAFEEaeKNSPAIIFIDEIDSIAPKRD 330
                 33444444445569************999875 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 5.2
  KAP_NTPase  23 vgLygkWGsGKssllnkledel 44 
                 v  yg+ G+GK+ l + + +e 
  CCE26702.1 531 VLFYGPPGTGKTMLAKAVANEC 552
                 6679999******999888775 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 1.1
  KAP_NTPase 161 ladmektLdalqkrlVvviDdLDrcet 187
                 + d++++ +a   + +v++D+LD++ +
  CCE26702.1 576 IRDIFDKARA-AAPCIVFLDELDSIAK 601
                 4455555444.8899********9876 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.022       7.6      34      69 ..     256     291 ..     248     298 .. 0.87
   2 ?    4.6   0.0      0.04        14      32      63 ..     528     559 ..     519     567 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.022
       AAA_6  34 ggapaGpagtGKtEtvkdLakalakqvvvfncsdql 69 
                 g  ++Gp gtGKt   + +a++ + +++++n  + +
  CCE26702.1 256 GVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIM 291
                 55679**********************999977665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.04
       AAA_6  32 klggapaGpagtGKtEtvkdLakalakqvvvf 63 
                 + g   +Gp gtGKt   k +a++ a  ++ +
  CCE26702.1 528 SRGVLFYGPPGTGKTMLAKAVANECAANFISV 559
                 5667789*********9999999998877765 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.083        29       4      26 ..     260     282 ..     257     287 .. 0.87
   2 ?    5.8   0.0     0.029        10       5      28 ..     535     558 ..     531     560 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.083
                     E-STTSSHHHHHHHHHHHHT-EE CS
  Cytidylate_kin   4 DGPagsGKssvaralaeklglky 26 
                      GP g+GK  +ara+a++ g+ +
      CCE26702.1 260 YGPPGTGKTLMARAVANETGAFF 282
                     6****************998765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.029
                     -STTSSHHHHHHHHHHHHT-EEEE CS
  Cytidylate_kin   5 GPagsGKssvaralaeklglkyld 28 
                     GP g+GK  +a+a+a++  +++++
      CCE26702.1 535 GPPGTGKTMLAKAVANECAANFIS 558
                     9****************9999986 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0094       3.3       8     100 ..     263     359 ..     259     363 .. 0.78
   2 ?    2.8   0.0      0.32   1.1e+02       9      54 ..     538     583 ..     534     624 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0094
  Cytidylate_kin2   8 yGsgGetigeaLAekLglpfy..dr.eiieevakelglseeev.eevdersrlssflskllaarvagdtldeklddelfeaqervirelaaees 97 
                       G+g++ +++a+A++ g  f+  +  ei+ ++a e++ +  ++ ee++++s++  f++++ +   + d+++ + + +++    +++  + a ++
       CCE26702.1 263 PGTGKTLMARAVANETGAFFFliNGpEIMSKMAGESESNLRKAfEEAEKNSPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSN 356
                      59**************977653355699999999999998888899999999999999998888777777777777777666666666664446 PP

  Cytidylate_kin2  98 vVi 100
                      vV+
       CCE26702.1 357 VVV 359
                      666 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.32
  Cytidylate_kin2   9 GsgGetigeaLAekLglpfydreiieevakelglseeev.eevders 54 
                      G+g++ +++a+A++   +f++ + +e ++  +g se+ +   +d+ +
       CCE26702.1 538 GTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIrDIFDK-A 583
                      9*********************99999999999999999444444.3 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0086         3       4      63 ..     258     322 ..     257     376 .. 0.79
   2 ?    1.4   0.0      0.61   2.1e+02       4      17 ..     532     545 ..     531     564 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0086
         Zot   4 lvtGapGsgKtsg..avkkdllp..alkegRkiitnidGlrlerieqvlgekvs.tarliridnp 63 
                 l +G+pG+gKt+   av ++     +l +g +i+ ++ G    ++++ ++e+ + ++ +i+id+ 
  CCE26702.1 258 LLYGPPGTGKTLMarAVANETGAffFLINGPEIMSKMAGESESNLRKAFEEAEKnSPAIIFIDEI 322
                 67899999999761156665555666778999999999999999999999888878899999832 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.61
         Zot   4 lvtGapGsgKtsga 17 
                 l++G+pG+gKt+ a
  CCE26702.1 532 LFYGPPGTGKTMLA 545
                 89*********865 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.046        16      59      78 ..     251     270 ..     229     276 .. 0.85
   2 ?    4.8   0.0     0.032        11      60      79 ..     526     545 ..     498     552 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.046
  AFG1_ATPase  59 vepvrglYlwGgvGrGKtyl 78 
                   +p+rg+ l+G+ G GKt +
   CCE26702.1 251 IKPPRGVLLYGPPGTGKTLM 270
                  579**************964 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.032
  AFG1_ATPase  60 epvrglYlwGgvGrGKtylm 79 
                   p rg+ ++G+ G GKt+l 
   CCE26702.1 526 SPSRGVLFYGPPGTGKTMLA 545
                  699***************96 PP

>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.5    0.0012       0.4       5      50 ..     725     771 ..     722     784 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHH CS
       Sec2p   5 ekkkreeaekekkklekEled....LtasLFeeANkmVaaarkekealek 50 
                 e++k++ea  ++ ++++E+ed    Lt++ FeeA +m   ark+  ++e+
  CCE26702.1 725 ERTKAREAAGDEMEIDEEVEDpvpeLTKAHFEEAMQM---ARKSVSDVEI 771
                 6788888889999999999966666*********998...5555555554 PP

>> UFD1  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.8   9.6e+02      66      96 ..      50      80 ..      32      94 .. 0.74
   2 ?    9.7   0.0    0.0015      0.53      67     166 ..      94     198 ..      75     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.8
        UFD1 66 aeegtvylPewmmenlgleegdlveiesvsl 96
                 ++  + l+e  m++l+l  gd+v ++  + 
  CCE26702.1 50 DDNSIIALSEATMDALQLFRGDTVLVRGKKR 80
                455678899999***********99987655 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0015
        UFD1  67 eegtvylPewmmenlgleegdlveie.svslpkgkfvklqpqsedfldisd..pkavLekaLr.nfatLtkgdvieikyndkvyelkvlevkpes.avs 160
                 ++g+  + + + +nl++++gd+++i    +++ +k + + p   +   i+      +L   +r  +  + +gd + ++   +++e+kv+ev+p + ++ 
  CCE26702.1  94 DDGSARINRVVRHNLRVKHGDMITILpCPDIKYAKRIAVLPIADTVEGITGslFDVFLAPYFReAYRPVRQGDLFIVRGGMRQVEFKVVEVDPPEyGIV 192
                 6788899999999***********994558999*******9999988886511578999****89***************************8665998 PP

        UFD1 161 iietdl 166
                   +t +
  CCE26702.1 193 AQDTVI 198
                 888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              52  [number of targets reported over threshold]
# CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 5318.24
//
Query:       CCE26703.1  [L=155]
Description: uncharacterized protein CPUR_00172 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.088   13.2   0.0       0.13   12.6   0.0    1.3  1  EnY2      Transcription factor e(y)2


Domain annotation for each model (and alignments):
>> EnY2  Transcription factor e(y)2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.4e-06      0.13       1      66 [.      28      92 ..      28     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.4e-06
                HHHHHHHHHHTTHHHHHHHHHHHHHH..HTTHHHHHHHHHHHHHHH..HTSS.CHHHHHHHHHHHHHH CS
        EnY2  1 kakiqqkLvesGererlkelLrerLe..esGWrdevkelckeiirekgleeevsveelveeitpkara 66
                +++i+  L + G  ++++e+L + L+   ++W   +++++   +r+ +  +  ++  l++++ +  r+
  CCE26703.1 28 RSQINALLLRDGHVKKIQEALLHALNshSTNWPTLIQNHALSLLRSGDI-S--TYPALLHRVLEDVRE 92
                589**********************87689***************9333.3..577777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1180.98
//
Query:       CCE26704.1  [L=86]
Description: uncharacterized protein CPUR_00173 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 647.60
//
Query:       CCE26705.1  [L=82]
Description: uncharacterized protein CPUR_00174 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 599.31
//
Query:       CCE26706.1  [L=84]
Description: uncharacterized protein CPUR_00175 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 610.94
//
Query:       CCE26707.1  [L=79]
Description: uncharacterized protein CPUR_00176 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 597.56
//
Query:       CCE26708.1  [L=83]
Description: uncharacterized protein CPUR_00177 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 645.09
//
Query:       CCE26709.1  [L=431]
Description: uncharacterized protein CPUR_00178 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-06   26.2  16.4     0.0031   17.8   2.1    3.3  3  zf-C6H2   zf-MYND-like zinc finger, mRNA-binding
     0.0053   16.8  20.8      0.007   16.4   2.0    3.4  3  zf-MYND   MYND finger
     0.0058   16.5   0.0      0.013   15.3   0.0    1.6  1  DUF5363   Family of unknown function (DUF5363)
  ------ inclusion threshold ------
      0.074   11.6   0.6          1    7.8   0.0    2.0  2  FUSC      Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> zf-C6H2  zf-MYND-like zinc finger, mRNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.9     0.074   3.3e+02       3      24 ..      38      58 ..      36      68 .. 0.76
   2 !   17.8   2.1   6.9e-07    0.0031       6      46 ..     288     337 ..     285     338 .. 0.78
   3 !   15.5   0.6   3.6e-06     0.016      14      44 ..     363     392 ..     356     395 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.074
     zf-C6H2  3 sseCgkeassLqCptClklgik 24
                +++Cgk+    +C  C    i+
  CCE26709.1 38 KKNCGKDK-VVECEECYGKVID 58
                57899998.9******876665 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 6.9e-07
     zf-C6H2   6 Cgkeas..s.LqCptClklgike.....sfFCsqeCFkknwkkH.kalHk 46 
                 Cgk+      L C +C+ l   +     +++Cs++C++k   +H  ++H+
  CCE26709.1 288 CGKDVPlsDvLSCTVCQALVQAGsggqlTVYCSEDCYRKGHDSHvDIMHD 337
                 65544322459*****9987776677889***************777785 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 3.6e-06
     zf-C6H2  14 qCptClklgikesfFCsqeCFkknwkkHkal 44 
                  C  Cl+l+   + +C+q+C  +n +kH+ +
  CCE26709.1 363 CCNECLRLKRA-TLYCTQDCALNNIAKHRLV 392
                 699******66.****************976 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   2.5      0.11   4.7e+02       2      17 ..      39      53 ..      37      63 .. 0.84
   2 !   16.4   2.0   1.6e-06     0.007       1      34 [.     285     331 ..     285     334 .. 0.86
   3 !   10.0   1.6   0.00016      0.72      12      35 ..     363     390 ..     342     392 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
                TTT--.B-SCE-TTTS CS
     zf-MYND  2 avCgkaealkkCagCk 17
                ++Cgk ++   C++C 
  CCE26709.1 39 KNCGK-DKVVECEECY 53
                58999.8888*****5 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.6e-06
                 -TTT--.B-SC...E-TTT..........S-SEESSHHHHHHCHHHH CS
     zf-MYND   1 CavCgkaealk...kCagC..........ksvfYCskeCqradwksH 34 
                 C vCgk+ +l+    C+ C          + + YCs++C r+   sH
  CCE26709.1 285 CVVCGKDVPLSdvlSCTVCqalvqagsggQLTVYCSEDCYRKGHDSH 331
                 99****76776889*****8888888888888*********998888 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00016
                 E-TTT....S-SEESSHHHHHHCHHHHC CS
     zf-MYND  12 kCagC....ksvfYCskeCqradwksHk 35 
                  C +C    +++ YC ++C  +   +H+
  CCE26709.1 363 CCNEClrlkRATLYCTQDCALNNIAKHR 390
                 699997777789*********9999998 PP

>> DUF5363  Family of unknown function (DUF5363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     3e-06     0.013       2      29 ..     105     134 ..     104     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3e-06
     DUF5363   2 qkekkglFKrllekYneFc..kelGvdkga 29 
                 ++ek+ +++++l+ Y eF+   + Gvd+  
  CCE26709.1 105 ESEKEAWYRWVLRRYPEFIaiSDHGVDQQE 134
                 589***************733799999865 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00022         1     236     331 ..       7     110 ..       1     125 [. 0.82
   2 ?    2.0   0.2     0.013        57     566     634 ..     223     264 ..     174     286 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00022
        FUSC 236 sslarllarlraeeaaavpelaallaelaal...........eaaaaaealeaalaalrarlralrraleadadtaalllarlaellaelaqllaslra 323
                 +s+ +++ +l+a +++     a +la+++al           +  + +e + + +++lr r+ + ++++   + ++ ++  +l++ll+++ +  +s+++
  CCE26709.1   7 HSMPEHWTELNALKRQK----ALCLAQVRALkisckkncgkdKVVECEECYGKVIDRLRSRFSESEEREW--FTQRKAFTNELDSLLQDVKRGKRSIES 99 
                 77777777888777777....668888888888899999998777889999999999**99999999988..*************************** PP

        FUSC 324 leaaiaa...a 331
                  ea+i++   a
  CCE26709.1 100 IEAGIESekeA 110
                 *****995542 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.013
        FUSC 566 lgravlrLrraleralaaearaaldavlaalafrapaaarsarrlrapaaalraldaalaalaaseats 634
                 + r vl+++r + +   ++ r+a  + l++l+                        +a  a++++  ++
  CCE26709.1 223 IDRIVLDIQRSRTA---QPQRDAHMRRLDELR------------------------RAKTAFEQNKLQA 264
                 22333333333322...223333333333333........................2222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       912  (0.0508673); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3019.85
//
Query:       CCE26710.1  [L=305]
Description: uncharacterized protein CPUR_00179 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-63  213.2   0.3    5.1e-63  212.6   0.1    1.4  2  MAGE      MAGE family
  ------ inclusion threshold ------
      0.065   13.5   0.0       0.16   12.2   0.0    1.6  1  DUF5055   Domain of unknown function (DUF5055)


Domain annotation for each model (and alignments):
>> MAGE  MAGE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.6   0.1   5.6e-67   5.1e-63       1     211 [.      59     257 ..      59     259 .. 0.96
   2 ?   -3.4   0.0      0.73   6.6e+03     141     156 ..     273     289 ..     272     297 .. 0.73

  Alignments for each domain:
  == domain 1  score: 212.6 bits;  conditional E-value: 5.6e-67
        MAGE   1 LVRlalacesqrtpIr...RedikkkvlgkqgkrafkkvfeeaqkqLrdvFGmeLvelpskeekkstessqekraaekakskkstrsksyiLvstlpee 96 
                 LVR+al+ce++r pIr   R+ ik++vl+++g r+fkk+f+ aq+qLr+++GmeL+elp +e  k  +s qekr+a++++s+++  s +yiL+stlp+ 
  CCE26710.1  59 LVRYALSCEFSRRPIRrdgRDGIKERVLQNRG-RSFKKIFTLAQQQLRHIWGMELRELPVRE--K--MSLQEKRQAMRTNSQPKIGSGAYILTSTLPSV 152
                 8***************555578********77.****************************9..6..99****************************** PP

        MAGE  97 yreaaaiiapskiesealeekeaaykGiltvvlslillsggsiseqeLekyLkrlgldenstskeitklklkldelLkklvkqgYlvrekes.kasdee 194
                 yr +a+ii+pski+s   +++ea+y++++t+v+sli+l+gg++ eq+L++yL rl++d+n  s e      k++ +Lkk++k+gY+v+  ++ + ++++
  CCE26710.1 153 YR-SAEIIKPSKIPS---ADDEATYVAFYTLVVSLIWLNGGELTEQKLKRYLLRLNADKNV-SSE------KTEVTLKKMEKHGYVVKSIDRpPVGQDG 240
                 **.***********9...99****************************************5.566......9*******************88999*** PP

        MAGE 195 eekveyrvGpRakvEig 211
                 e++++++vGpRak Eig
  CCE26710.1 241 EQILTWHVGPRAKEEIG 257
                 ****************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.73
        MAGE 141 eqeLekyLkr.lglden 156
                 +++Lek+L+  lgl+e+
  CCE26710.1 273 DDDLEKKLRSsLGLKEK 289
                 78999999876788777 PP

>> DUF5055  Domain of unknown function (DUF5055)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.7e-05      0.16      10      41 ..     205     236 ..     197     241 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
     DUF5055  10 edkeytleftrrtvkemekkgfvaadieekpm 41 
                  dk+   e t  t+k+mek+g+v + i++ p+
  CCE26710.1 205 ADKNVSSEKTEVTLKKMEKHGYVVKSIDRPPV 236
                 5899999*********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2278.51
//
Query:       CCE26711.1  [L=870]
Description: uncharacterized protein CPUR_00180 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-32  111.4   0.1    1.2e-31  110.3   0.1    1.6  1  SLS       Mitochondrial inner-membrane-bound regulator


Domain annotation for each model (and alignments):
>> SLS  Mitochondrial inner-membrane-bound regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.1   6.7e-36   1.2e-31       1     221 [.     311     522 ..     311     523 .. 0.83

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 6.7e-36
         SLS   1 KeklierIlrecWkleiseevealgeleevklsprefflLltgngklLqnlsri.....hgakielnrsenklritAtkstaeyieasineilknitte 94 
                 K++ + +Il+  W+lei+e+ve+lg    ++l+p  f+l++++++ +++ ls++     ++++i+ +++e+++ +++ + ++++i+ +++ei+++i+++
  CCE26711.1 311 KQRRAATILTGKWGLEIQEQVEGLGGSV-FWLKPNVFQLITQSSSGIIERLSNDfldtsKNERISTHLEECRIGVYTGRPNVTTILSRLDEIARSIKSQ 408
                 999*************************.********************************************************************** PP

         SLS  95 tvdlsellklskvdklkdl.lseelleelgrltntvie.........vs..eddnnknskselkisalgedradlakRlLlwalgpsdsnkrlsealla 181
                 t++         v++++++ l++ +l+el+++t+tv++         vs  ++ +       ++ +   e +ad+++RlL+       + ++++ +l++
  CCE26711.1 409 TIS---------VQQVEQEnLTKLVLDELAAITETVLQydsdnatldVSwlPTNP------LVSGAEQVEGPADVVFRLLVGRQ----AVPHTTRVLAM 488
                 ***.........567778889*****************87777666633421111......2233344677**********999....45566666656 PP

         SLS 182 vtsssksknttlrlvekekdypfrdeeslpWkdrlkeWaR 221
                 ++++ + + ++  ++++++         ++W+d+l++W+R
  CCE26711.1 489 SRTEPSVS-KNSLFLNYRRG-----RRGMSWRDKLRQWYR 522
                 55555544.23345554444.....45************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5761.25
//
Query:       CCE26712.1  [L=464]
Description: translation elongation factor 1 alpha [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-52  178.2   0.1    1.8e-52  177.7   0.1    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    5.8e-41  139.3   0.0    1.3e-40  138.2   0.0    1.6  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    3.4e-15   56.2   0.6    1.2e-14   54.5   0.6    2.0  1  GTP_EFTU_D2  Elongation factor Tu domain 2
  ------ inclusion threshold ------
       0.03   14.2   0.3      0.083   12.8   0.3    1.7  1  GTP_EFTU_D4  Elongation factor Tu domain 4
      0.038   14.1   0.1       0.16   12.1   0.0    2.1  2  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   0.1   5.1e-56   1.8e-52       3     190 ..      11     237 ..       9     241 .. 0.92

  Alignments for each domain:
  == domain 1  score: 177.7 bits;  conditional E-value: 5.1e-56
                 EEEE.EEEESTTSSHHHHHHHHHHHTTSSCHHHHHH.HHHST............HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHH CS
    GTP_EFTU   3 irni.giighvDhGKtTLtdrLlyktgaiskkgeka.eeerv............lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskev 87 
                 ++n+ +i++hvD+GK+T+t++L+y++g i+k++ ++ e+e++            lD+lk+ErergiTi++a +++e  t ky +++iD+PGH+dF+k++
  CCE26712.1  11 HINVvVILSHVDSGKSTTTGHLIYQCGGIDKRTIEKfEKEAAelgkgsfkyawvLDKLKAERERGITIDIALWKFE--TPKYMVTVIDAPGHRDFIKNM 107
                 66651678***************************964344478999*****************************..********************* PP

                 HHHHHT-SEEEEEEETTTB.......STHHHHHHHHHHHHTTTE.EEEEEESCGST...HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBT CS
    GTP_EFTU  88 irglrvlDgavlvvdaveG.......vepqteevlrlalkegvp.iivfiNKmDrl...kaelkeiveevkqklsrkeeklekygekgekevpvvfgSa 175
                 i+g++++D+a+l+++a  G          qt+e++ la ++gv+ +iv+iNKmD +   +a+++ei++e + ++      ++k+g++ + +v +v++S+
  CCE26712.1 108 ITGTSQADCAILIIAAGTGefeagisKDGQTREHALLAYTLGVKqLIVAINKMDTAkwaEARYQEIIKETS-NF------IKKVGYNPK-TVAFVPISG 198
                 *************************99*******************************************9.88......8******96.********* PP

                 TTTBTHH........................HHHHHHHH CS
    GTP_EFTU 176 lkgegvk........................tllealve 190
                 ++g+++                         tllea+++
  CCE26712.1 199 FNGDNMLaastncpwykgweketkagkstgkTLLEAIDS 237
                 ****99888888888888888888888888889999887 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.2   0.0   3.6e-44   1.3e-40       5     111 ..     340     444 ..     336     445 .. 0.98

  Alignments for each domain:
  == domain 1  score: 138.2 bits;  conditional E-value: 3.6e-44
                  ECCEEEEEEESSS..SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEEEECTTCE CS
  GTP_EFTU_D3   5 htkfeAqvyilekerhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFaiReggrT 102
                  +++f+Aqv++l++  ++++ agY+pvl+++ta++++k++e+++k+d++t+k++e+ p+f+k+Gd++iv++ ++kp+++e +++yp+lGrFa+R++++T
   CCE26712.1 340 AASFDAQVIVLNH--PGQVGAGYAPVLDCHTAHIACKFAEIKEKIDRRTGKAVEDAPKFIKSGDSAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQT 435
                  689**********..*********************************************************************************** PP

                  EEEEEEEEE CS
  GTP_EFTU_D3 103 vaaGvvtei 111
                  va+Gv++++
   CCE26712.1 436 VAVGVIKSV 444
                  *******98 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.6   3.3e-18   1.2e-14       1      72 [.     263     328 ..     263     330 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 3.3e-18
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdt 72 
                  Gtv  gr+++G+lk+G+ v + + n t      t+++s+e++he++ e  +g+n+G++v+ + ++d i++G++
   CCE26712.1 263 GTVPVGRIETGVLKPGMVVTFAPaNVT------TEVKSVEMHHEQLSEGNPGDNVGFNVKNVSVKD-IRRGNV 328
                  99*******************998877......*********************************.****98 PP

>> GTP_EFTU_D4  Elongation factor Tu domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   2.3e-05     0.083      21      81 ..     267     325 ..     262     329 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.3e-05
                  EEEEEEEEEEETT-EEEETTE.EEEEEEEEEETTEEESEEETT-EEEEEEESS-TTTS--T CS
  GTP_EFTU_D4  21 vGvevlgGvikpgvklikedGrevGeilqiqdkgkkleeakaGqevaisiegkivGrqike 81 
                  vG ++ +Gv+kpg+ +  +  +   e+++++ ++++l+e + G++v+  +++    ++i  
   CCE26712.1 267 VG-RIETGVLKPGMVVTFAPANVTTEVKSVEMHHEQLSEGNPGDNVGFNVKNVS-VKDIRR 325
                  78.99*************999999***********************9999754.355555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.92   3.3e+03       2      20 ..      15      33 ..      14      48 .. 0.76
   2 ?   12.1   0.0   4.5e-05      0.16      11      87 ..      55     129 ..      51     189 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.92
                EEEEESTTSSHHHHHHHHH CS
    MMR_HSR1  2 vaivGrpNvGKStLinalt 20
                v+i+ +  +GKSt    l+
  CCE26712.1 15 VVILSHVDSGKSTTTGHLI 33
                566667889***9876665 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.5e-05
                 SHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT....T CS
    MMR_HSR1  11 GKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas....e 87 
                 GK ++  a++ +k +++++ g T+di   ++++ +  ++++D pG  +    +  +++ +    +ad ++l++ a     e
  CCE26712.1  55 GKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYMVTVIDAPG--H----RDFIKNMITGTSQADCAILIIAAGtgefE 129
                 999999999999********************88899********..3....22344555555567777777765544441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3339.65
//
Query:       CCE26713.1  [L=456]
Description: related to tetracycline resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-38  130.0  18.2    9.8e-38  130.0  18.2    1.7  2  MFS_1     Major Facilitator Superfamily
    3.4e-08   32.8   8.6    3.4e-08   32.8   8.6    1.7  2  Sugar_tr  Sugar (and other) transporter
    0.00028   19.4   0.8    0.00041   18.9   0.8    1.2  1  TRI12     Fungal trichothecene efflux pump (TRI12)
     0.0019   17.7   1.2         16    4.9   0.0    3.4  3  DUF1129   Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.0  18.2   2.2e-41   9.8e-38       5     353 .]      20     406 ..      16     406 .. 0.77
   2 ?   -1.4   0.1      0.19   8.5e+02      17      47 ..     410     440 ..     407     451 .. 0.64

  Alignments for each domain:
  == domain 1  score: 130.0 bits;  conditional E-value: 2.2e-41
       MFS_1   5 aflsalarsilgpalplalaed.....................lg.........ispse...........igllltlyalgaavaslplGrlsdrfGrr 62 
                 ++l  +++++++p++p++l e                      lg         +                g + +l+++++a+as+++Grlsdr+Grr
  CCE26713.1  20 LLLDLISFTFILPLFPQLL-EFyrdreapsligggpqtllqrlLGglnqykasfS---RpidsrydivllGGAMGSLFSILQAIASPLIGRLSDRYGRR 114
                 5566666666777776544.11122222333333333333333113333333320...222223333333566999*********************** PP

       MFS_1  63 rvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilai 159
                   ll+++ + +l+ +ll++a+  + +++++rv+ Gl + + + ++ a+++d++ ++ rg+ +++++a+fs+++ +gp+lg++l+  s+    +f  +a+
  CCE26713.1 115 TALLTSMCGNVLS-VLLWVAAVDFrTFIASRVVGGLSE-GNIQLSTAMASDISDESSRGSTMAVIGACFSIAFTFGPGLGAWLStKSFVAANPFATAAA 211
                 *************.77775566777************7.8899999**************************************9999999******** PP

       MFS_1 160 vsllafv..lfllllpeepperkrkspkeee......kgtgpaplvp.awkallkdpvlwillialllfffgfsglltllplylqevlglsglllagll 249
                 +sl+++v   ++l+l+ +++ ++   +++ +      + +++++++  + ++ +++ +++ l ++ ++f ++fsg+ + l +++ e + ++    +g l
  CCE26713.1 212 FSLVLIVteTIYLYLYLPETLPSLTQQQKGGntgdklENKAKKGISGkGKSSQRTNSHFL-LNAVHFFFLLFFSGMESSLSFMTYELFTFT-SGNNGRL 308
                 *******996677777777777777777776777777444444444477799999**998.55555555568999999999999*******.6799989 PP

       MFS_1 250 lallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslg 348
                 l++++lv+   ++l   + +rl++   l + ++++++++++++l+ v  +   l+++  ++ +++++v++ l+al s  a ++e+g+ +g   + g+lg
  CCE26713.1 309 LGFIGLVA---SILQRGVTRRLPP--LLSVRIGVISCLTAFFLLARVD-TIGGLYAAASCLAMTSATVVTGLNALSSFEAHEDERGAKLGNLRSWGQLG 401
                 99999998...8788888899887..7777777777777777777777.777777799999************************************** PP

       MFS_1 349 galgp 353
                 + lgp
  CCE26713.1 402 RGLGP 406
                 ***98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.19
       MFS_1  17 palplalaedlgispseigllltlyalgaav 47 
                 +++ ++ ++++ +++ ++g+++++ a+ +++
  CCE26713.1 410 TSVYWWAGREYAYNAGAAGIAVVAAAVMMGL 440
                 3444477777777777777777777666655 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   8.6   7.6e-12   3.4e-08      41     234 ..      79     266 ..      64     372 .. 0.72
   2 ?   -2.2   0.0      0.32   1.4e+03      48      94 ..     391     439 ..     361     443 .. 0.63

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 7.6e-12
                 HHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHH CS
    Sugar_tr  41 keessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgal 139
                  ++  +l g++ s+f++ ++i s ++g l+dr+GR+ +ll++    v + +l +aa     +  +i++Rv+ G++ G ++ l++  +s i+ ++ Rg  
  CCE26713.1  79 RYDIVLLGGAMGSLFSILQAIASPLIGRLSDRYGRRTALLTSMCGNVLSVLLWVAAV---DFRTFIASRVVGGLSEGNIQ-LSTAMASDISDESSRGST 173
                 444566778999*********************************************...9****************876.67788999**99999976 PP

                 ....HHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHH.HHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHH CS
    Sugar_tr 140 ....vslyqlaitfGilvaaifglglnktsnadgwrillglqlvpalll.lilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdslea 233
                     + ++  a tfG  ++a++ ++   + +a+ +    +++lv+ ++  ++l l lPE+   l +++k   +   l++     +a++ +  + +s ++
  CCE26713.1 174 maviGACFSIAFTFGPGLGAWLSTK--SFVAANPFATAAAFSLVLIVTEtIYLYLYLPETLPSLTQQQKGGNTGDKLEN-----KAKKGISGKGKSSQR 265
                 1111455666666666666665444..444466788777777777776515556899*997666666655544444444.....444444444444444 PP

                 H CS
    Sugar_tr 234 e 234
                 +
  CCE26713.1 266 T 266
                 4 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.32
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH..HHHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslli..aavlfvigavlqa 94 
                 +g + s  ++G+ +G +++  +  + GR +++ +  a++ +v++av+++
  CCE26713.1 391 LGNLRSWGQLGRGLGPILFTSVYWWAGREYAYNAgaAGIAVVAAAVMMG 439
                 5677777778888888888888888888888877533444444444444 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.8   9.2e-08   0.00041      84     192 ..      90     198 ..      85     257 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9.2e-08
       TRI12  84 stlwttgqavsilvmgrltdrfgrrpfvilthilglv.gaivgctatkfntllaamtllgvaagpagasplfvgelmsnktkflgllivsipvvvtsgl 181
                  +l+++ qa++  ++grl+dr+grr  + lt + g v   ++ ++a  f t++a+  + g++ g    s  +  ++  + ++   + ++ +   +  + 
  CCE26713.1  90 GSLFSILQAIASPLIGRLSDRYGRRTAL-LTSMCGNVlSVLLWVAAVDFRTFIASRVVGGLSEGNIQLSTAMASDISDESSRGSTMAVIGACFSIAFTF 187
                 5688889******************876.566666551667789999******************9999999999888888887777777766665668 PP

       TRI12 182 spylgqrlaiq 192
                 +p lg  l+ +
  CCE26713.1 188 GPGLGAWLSTK 198
                 88888777765 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0039        17     116     171 ..      82     142 ..      62     151 .. 0.87
   2 !    4.9   0.0    0.0035        16      31      95 ..     228     286 ..     225     303 .. 0.70
   3 !    4.6   0.1    0.0043        19     163     197 ..     312     346 ..     307     354 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0039
     DUF1129 116 lllvalvgGlamvlvyrlltre.....kkkkkrpplwkrllilllllvvwlvlftlvallp 171
                 ++l++  +G ++ +++ + ++      ++  +r+ l+ ++   +l++++w++++ + +++ 
  CCE26713.1  82 IVLLGGAMGSLFSILQAIASPLigrlsDRYGRRTALLTSMCGNVLSVLLWVAAVDFRTFIA 142
                 788888999999999999999888887778899999****************998887765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0035
     DUF1129  31 leevlpelleaQkkGktArqLygtptekaeellekkkkakkeskenpwlmalDnsLlllalfall 95 
                 l e+lp l ++Qk G t  +L    ++ka++ +  k k ++++++++ l+a+   +++l +f+ +
  CCE26713.1 228 LPETLPSLTQQQKGGNTGDKL----ENKAKKGISGKGKSSQRTNSHFLLNAV--HFFFLLFFSGM 286
                 6799***************99....566667777777777766633444443..34555555555 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0043
     DUF1129 163 lftlvallpaviNpvLpplvliiigviafvvryyl 197
                 + +++++l++ ++++Lppl ++ igvi+    ++l
  CCE26713.1 312 IGLVASILQRGVTRRLPPLLSVRIGVISCLTAFFL 346
                 44566779********************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3383.20
//
Query:       CCE26714.1  [L=540]
Description: related to trichodiene oxygenase cytochrome P450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-46  156.8   0.0    1.2e-45  156.2   0.0    1.2  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   0.0   6.5e-50   1.2e-45      25     432 ..      70     482 ..      49     485 .. 0.78

  Alignments for each domain:
  == domain 1  score: 156.2 bits;  conditional E-value: 6.5e-50
                 HHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHH CS
        p450  25 vlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeea 122
                 ++ +l+k+ygp++r+ + +   v +++p++   +++  +  + ++  +++ +++     +  +++ ++++++  R+ ++p + ++ +  +l +++ee +
  CCE26714.1  70 KILELHKQYGPVVRISPWE---VHVGEPDFQDDLYGGPT-RPRDK-WQFWAKQFG--APNSALATISHDHHRIRRSAINPFFSTQ-SVrNLQAVIEERV 160
                 4678999999999998876...55677888888887774.77776.447777744..3444444444456666666666666666.555********** PP

                 HHHHHHHHCCCCHCS..EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH....HHHHHHHHHHHHHHHHCHHHHC..CCCCH.HHTCCSCHHHHHHHHH CS
        p450 123 edlveklrkkagess..elditellskaaldvigsilFgarfdlledek....lselvkaveelssllskssvql..lllfp.llkylptkllrklkea 212
                 + l+e+l k a +++   ld    +s ++ dvi++ +F ++  l+e ++     ++ + +  +l  l+++ ++ l  ++  p  ++  + + +  + ++
  CCE26714.1 161 DSLLEALYKVAASRDrqPLDFLYPFSAFTNDVINEYAFARSDHLIERPDfgaeVTDNLLMGTHLGPLVKHANWALklINALPeSFSGRWIPGWSGFLKM 259
                 ************999999***********************9999999966663444555555555666666554113333444443344444444444 PP

                 H.HHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC.CT CS
        p450 213 v.kklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevl.gd 309
                   ++++++++ + +e+ e+++ +  ++ +  + ll+++ +  ++ + + + la++   l  +G+ Tts+tl+ a ++L+++P++ ++lr E+ e++   
  CCE26714.1 260 KnDIVDQIAMIKATENTEKWQLD-VDHTTIFHELLSSD-ALPDR-EKTPARLAQEGQILVQGGTLTTSWTLTLATFHLLHRPSTLKRLRDELFEAIpDP 355
                 30566777777888888888888.46777777777775.66666.889************************************************888 PP

                 TTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.......CEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT CS
        p450 310 kreptyddlqklpyldavikEtLRlhpvvplllpRevtk.......dvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfa 401
                 ++ +  + l++lp+l+av+kE+LR    +  +l+R +         + + ++ +ip +t+v++++y + +d+++fp+P  F+peR+l++ +   r + +
  CCE26714.1 356 NEVVPLAKLESLPFLRAVVKEALRHGIGTSGRLSRIARDeahvvhdEQSMKDWHIPPNTVVSMSPYKTIMDETIFPDPMGFHPERWLKDGE---RLEKY 451
                 88*********************97666666666666653211111556666*************************************54...99999 PP

                 --TTEEGGGS-TTHHHHHHHHHHHHHHHHHH CS
        p450 402 flPFGaGpRnCiGerlArmelklflatlLqn 432
                    FG G R+C+G+ lA  el+l+la+l+++
  CCE26714.1 452 LAVFGGGTRSCLGMALANAELHLALAKLFRR 482
                 999*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4299.69
//
Query:       CCE26715.1  [L=7]
Description: uncharacterized protein CPUR_00184 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (7 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        13  (0.000725082); expected 358.6 (0.02)
Passed bias filter:                       13  (0.000725082); expected 358.6 (0.02)
Passed Vit filter:                         0  (0); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 65.19
//
Query:       CCE26716.1  [L=232]
Description: uncharacterized protein CPUR_00185 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-14   51.4   1.7    1.2e-13   50.5   1.7    1.5  1  Yae1_N    Essential protein Yae1, N terminal


Domain annotation for each model (and alignments):
>> Yae1_N  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   1.7   6.7e-18   1.2e-13       1      39 []      70     108 ..      70     108 .. 0.98

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 6.7e-18
      Yae1_N   1 GYreGiaeGkeqglqeGfdeGyqeGaqlGlelGqilGvl 39 
                 GYreGi+ +ke++ q+GfdeG+  Ga lG ++Gq+lG++
  CCE26716.1  70 GYREGITVAKESNIQAGFDEGFSLGAALGSQAGQLLGIV 108
                 9************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1976.02
//
Query:       CCE26717.1  [L=316]
Description: uncharacterized protein CPUR_00186 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-69  234.2   0.0    4.6e-69  232.6   0.0    1.7  2  CENP-O    Cenp-O kinetochore centromere component
  ------ inclusion threshold ------
      0.023   14.8   3.0       0.18   12.0   3.4    2.0  2  Uds1      Up-regulated During Septation
      0.055   12.1   1.6      0.038   12.6   0.2    1.5  2  DUF3138   Protein of unknown function (DUF3138)
        2.2    9.2   8.2        9.6    7.1   3.7    2.4  2  DUF3235   Protein of unknown function (DUF3235)


Domain annotation for each model (and alignments):
>> CENP-O  Cenp-O kinetochore centromere component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2       0.4   1.8e+03     111     125 ..      22      41 ..       7      81 .. 0.48
   2 !  232.6   0.0     1e-72   4.6e-69       1     213 []      89     304 ..      89     304 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.4
      CENP-O 111 davedLrealglea.....k 125
                  +++ Lr++l+++      +
  CCE26717.1  22 RQATSLRKQLQIQCstilsS 41 
                 34445555555554222220 PP

  == domain 2  score: 232.6 bits;  conditional E-value: 1e-72
      CENP-O   1 vTtFrvkDPdpnavdggnvLGiridvfsrgrflepYYvlLkrpseeekelrvhrHTvPafipLaklearylpap..............eeeeeakkkke 85 
                 vT+F+v+DPdp+avd+g+vLG+r++v+srg+fl+pYYv+L+rp+  +k+lrvhrHTvP+++pLa+l+arylpap              +e+++  ++++
  CCE26717.1  89 VTSFKVRDPDPHAVDQGHVLGLRFEVMSRGQFLRPYYVMLNRPYPGSKHLRVHRHTVPPAVPLAGLAARYLPAPssrgrgpqdddaeaAEAAAVVAATT 187
                 7***********************************************************************************998777777788999 PP

      CENP-O  86 ktrkqdLkkFvrelrreLvayhnRldavedLrealgleakkteeeeseereeelesrelkivslsaadleakqiriewadgrvgrlvisddGevekavv 184
                 +++ q L +Fvr+lrre+v+yhnRl + +dLr++lgl+           +   ++  + ++v++  ad+eakqi+++wad+r+grlv++ddG+v k+vv
  CCE26717.1 188 TASGQKLDRFVRTLRREIVRYHNRLGVSADLRRRLGLHG----------DGAAQNALPNALVEVGIADIEAKQINLTWADERTGRLVMDDDGKVIKFVV 276
                 99************************************9..........2234567899**************************************** PP

      CENP-O 185 igesgkrdkeleeallggdgriedlvkrL 213
                 +g +g rd+e++ +++ +d  ied++++L
  CCE26717.1 277 FGVEG-RDWEASGDIFTKDDGIEDVARKL 304
                 *****.*******************9986 PP

>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.4   3.9e-05      0.18      22      94 ..       9      81 ..       6      93 .. 0.72
   2 ?   -0.8   0.0      0.35   1.6e+03      84     111 ..     184     211 ..     148     226 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.9e-05
        Uds1 22 eVeelkkelkaLeerlealrkkLaletklrdaarsLsrlyssskksakssaarsnskssreslakaeeelaes 94
                e + l ke++aL ++ ++lrk+L+++ +   +  s srl  s ++s+  ++a s++++ +  + ++++ ++++
  CCE26717.1  9 ESARLDKEIAALRRQATSLRKQLQIQCSTILSSASTSRLIQSASSSSAPAQAASHAAKLSSRSTQQQAYMQQC 81
                667899***********************9999******9666666443333333333334445555555555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.35
        Uds1  84 lakaeeelaeserkvdelaselekleer 111
                  a+++++ ++++r v  l +e+ + ++r
  CCE26717.1 184 AATTTASGQKLDRFVRTLRREIVRYHNR 211
                 4444455555555555566666555555 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   8.6e-06     0.038      16      90 ..       6      82 ..       1     144 [. 0.60
   2 ?   -3.0   0.1      0.44     2e+03      67      81 ..     175     189 ..     154     213 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.6e-06
     DUF3138 16 glaaaaatadrikalkaqltalqrqvkelraalaaakaaaGgkissqkaaaaaaaaaeaaaalteddvaq...lkeqi 90
                g++  a   ++i+al+ q t+l++q++   ++++++ a++   i s ++++a a+aa  aa l+   ++q   +++ i
  CCE26717.1  6 GASESARLDKEIAALRRQATSLRKQLQIQCSTILSS-ASTSRLIQSASSSSAPAQAASHAAKLSSRSTQQqayMQQCI 82
                555556667788888888888888887554444443.44455566666666666665555555544333312144444 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.44
     DUF3138  67 aaaaaaeaaaalted 81 
                  aa+aa   aa t  
  CCE26717.1 175 EAAEAAAVVAATTTA 189
                 222222222222222 PP

>> DUF3235  Protein of unknown function (DUF3235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.7    0.0021       9.6       2      33 ..      39      73 ..      39      87 .. 0.60
   2 ?    3.7   0.1     0.025   1.1e+02       5      44 ..     161     195 ..     157     215 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0021
                XTTS--HHHHTTT....S-HHHHHHHHHHHHHHHH CS
     DUF3235  2 LnSAPtpRdaaaa...qapApvaaaaataqkavad 33
                L+SA+t R  ++a    apA++a  aa+   + ++
  CCE26717.1 39 LSSASTSRLIQSAsssSAPAQAASHAAKLSSRSTQ 73
                8*******965553225555555555544443332 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.025
                 S--HHHHTTT.S-HHHHHHHHHHHHHHHHHT--HHHHHHH CS
     DUF3235   5 APtpRdaaaaqapApvaaaaataqkavadlaatsdelavD 44 
                 AP+ R    +   A++a+aaa +++++++++++     +D
  CCE26717.1 161 APSSRGRGPQDDDAEAAEAAAVVAATTTASGQK-----LD 195
                 666666555555666666666666655555544.....33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1201  (0.0669864); expected 358.6 (0.02)
Passed bias filter:                      727  (0.0405488); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2167.58
//
Query:       CCE26718.1  [L=544]
Description: related to acetyl-CoA transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.1e-163  545.7  20.6    8.7e-84  282.0  10.0    3.2  3  Acatn        Acetyl-coenzyme A transporter 1


Domain annotation for each model (and alignments):
>> Acatn  Acetyl-coenzyme A transporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.0  10.0   4.8e-88   8.7e-84       2     226 ..      59     269 ..      58     275 .. 0.92
   2 !   95.5   0.0   1.5e-31   2.7e-27     259     345 ..     267     353 ..     265     356 .. 0.94
   3 !  177.2   0.8   2.6e-56   4.7e-52     376     547 ..     356     536 ..     351     537 .. 0.92

  Alignments for each domain:
  == domain 1  score: 282.0 bits;  conditional E-value: 4.8e-88
       Acatn   2 fylLvvLyllqGiPvGLafgtiPflLkslaketsftelgvfslatyPyslkilWsPivDslyskkiGrrrsWiiPvqlvsgilllvlglaiskglifeg 100
                 f lLv+Ly+lqGiP+GLa+g++PflLk    ++s+ e+g+fsla+yPyslk+lWsP vD+++s kiGrr++Wi+P+q++sgi ++ lg  +++ +  + 
  CCE26718.1  59 FLLLVLLYFLQGIPMGLAMGSVPFLLKN---HMSYGEIGIFSLASYPYSLKLLWSPFVDAVWSSKIGRRKTWIVPIQFLSGISMIWLGSHVEEMMATT- 153
                 89*************************9...9*****************************************************9*96665443333. PP

       Acatn 101 vddafhgeasekvlkvnilsLtlvflvLvllcatqDiavDgWaltiLskkslsyastaqtvGlnlGyflsftvflslnssdfvnkylrkvpleyglvsl 199
                            k +   +  + l++++Lvl+catqDiavDgWalt+L++ ++syastaqtvGl  G+f+s+tvfl+ln sdf+nk++r+vp+e glvsl
  CCE26718.1 154 ----------GKPNGPTVWGFMLWWFFLVLMCATQDIAVDGWALTLLTPANVSYASTAQTVGLTAGHFMSYTVFLALNASDFANKWFRSVPSEEGLVSL 242
                 ..........233344677777788889*********************************************************************** PP

       Acatn 200 sgylklaGllyllvtlyvvfltkekpl 226
                 +gyl+l+G+ yl+vt+ + f+++e+  
  CCE26718.1 243 GGYLTLWGWAYLVVTIALGFMKREEKS 269
                 ***********************9974 PP

  == domain 2  score: 95.5 bits;  conditional E-value: 1.5e-31
       Acatn 259 eksektssiksvyrllikvlkLksvrllalihlisklafqcneaatnlkLLekGlkreDlavtvlidvPfeiifgyyvakwssdkek 345
                 ekse+   +  vyr ++ +lkLk+v++++++hli+k++fq n++ tnlkLL+kG+ ++++a+tvlid+Pfei +gyy   ws++ ++
  CCE26718.1 267 EKSENEDGVWDVYRIMWGILKLKNVQTIIIVHLIAKIGFQANDGVTNLKLLDKGFGKDNMALTVLIDFPFEISLGYYAGMWSQKYTP 353
                 6778889999************************************************************************98765 PP

  == domain 3  score: 177.2 bits;  conditional E-value: 2.6e-56
       Acatn 376 PWlygflgrllaailgsyvvksfPkdgeitksyfllviiqhllgsflstvqfvgisafhtriaDpvlgGtymtllntlsnlGgtWprllvlslidyfti 474
                  W +gf+grl+aa+++++ v+ fP +g +t  y l+vi  hl++ f +t+ fv++safh++++Dpv+gGtymtll t+snlGgt+pr +vl l+d ft+
  CCE26718.1 356 LWCWGFVGRLAAALFAQFTVAIFP-SGGVTSWYMLVVIAEHLVSTFTNTIMFVAVSAFHAKVSDPVIGGTYMTLLATVSNLGGTFPRYFVLKLVDSFTV 453
                 5***********************.599*********************************************************************** PP

       Acatn 475 yecvledksketvllkna............skelctkslggkvsivrDgyyvtnllCivlGillyftylkkkaqkLqklpisaWr 547
                 ++c+ + +  +t +lk++            +ke c++  gg++++ rDgyy  n+lC+++G++ ++ y+k ++ +Lq+lp+ aWr
  CCE26718.1 454 ATCHPSLE-ANTSKLKGSlvteafscavqaEKERCEN-GGGTCHMSRDGYYAVNMLCVAFGVVTFLWYIKPRVLHLQSLPLRAWR 536
                 ***96544.4555555556777899999877888887.89********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3847.94
//
Query:       CCE26719.1  [L=438]
Description: uncharacterized protein CPUR_00188 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-13   50.7   0.0    1.1e-05   25.4   0.0    3.5  3  DFP       DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   6.1e-10   1.1e-05       4      56 ..      45      99 ..      42     110 .. 0.88
   2 !    6.9   0.1   0.00029       5.1      84     112 ..     215     245 ..     198     265 .. 0.77
   3 !   14.0   0.0   1.8e-06     0.033     111     172 ..     285     348 ..     249     360 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 6.1e-10
                -EEEEEES-EEEECCT..TEEEEE----HHHHHHHHHHHHTT-EEEEEE-S-SS- CS
         DFP  4 kkvlvtaGpTrEaiDp..VRfisNrSSGkmGyalAeaaaarGaeVtlvsgpvsle 56
                + vl+t+G+T  ++ +  VRfi N S G+ G++ Ae ++++G  V + + + sl+
  CCE26719.1 45 RVVLITSGGTTVPLEKqtVRFIDNFSAGTRGATSAEYFLEAGYAVIFLHRQFSLR 99
                679***********8444******************************9998776 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00029
                 SEEEE---S--EEE..S-------------. CS
         DFP  84 divimaAAvaDyrp..keaaeeKikkeeeee 112
                  ++  aAAv+D+ +  ++ ae+Ki+ +++++
  CCE26719.1 215 GLLYLAAAVSDFFVppERMAEHKIQSTDAAA 245
                 56778******97555999*****9866554 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 1.8e-06
                 -..----EEE---HHHHHHHC-S.S-EEEEEEE-SS..-HHHHHHHHHHHTT-SEEEEEEGGGT CS
         DFP 111 eeeltleleknpdilaelaekkkkkqllvGFaaete..ellenareklerkgldlivaNdvske 172
                 +++l ++l + p+ l++l +  +++ ++v +++et+   l+++ar  ler +  l++ N +s++
  CCE26719.1 285 SKRLVVDLDPVPKFLKNLVDGWAPQGMIVSYKLETDpaILVRKARYSLERYQHHLVIGNLLSTR 348
                 4568899***********887778889********767999******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3270.13
//
Query:       CCE26720.1  [L=454]
Description: related to monocarboxylate transporter 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-42  143.3  75.5    3.7e-37  128.1  49.7    2.0  2  MFS_1            Major Facilitator Superfamily
    7.4e-07   28.4  42.3    0.00029   19.8  20.6    3.0  2  Sugar_tr         Sugar (and other) transporter
  ------ inclusion threshold ------
        3.7    7.5   8.2       0.55   10.2   1.6    2.5  2  DUF5090          Domain of unknown function (DUF5090)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1  49.7   6.2e-41   3.7e-37       6     352 ..      72     404 ..      63     405 .. 0.88
   2 !   29.2  17.8   7.3e-11   4.4e-07      47     171 ..     312     437 ..     309     446 .. 0.85

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 6.2e-41
       MFS_1   6 flsalarsilgpalpl.alaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgaga 101
                 ++sa++ +++++++   +l+++l   s+ ++g+++++y+++a++  + +G++ d++G+r+++++g  + + g+l+++f+  lw ++l + +l+G+g+++
  CCE26720.1  72 LMSAMGLMNTIAVFQAyTLSHQLRhCSAGTVGWVYSIYTFLAFFCGVYIGPVFDKYGPRWLIIAGCGTIVCGVLCMSFCKELWqFVLSFGILCGFGTSL 170
                 344444444444444446666654599999***************************************9997777799******************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpaw 200
                 +f+ ++a++ +wf++ +rg+a+gl+s++ ++G i+ pll   l +s+g+ +++ +la+++l++++l+++l++ + p+ ++ +  ++            +
  CCE26720.1 171 IFTPCIAAVGHWFHR-RRGLATGLASTAGGIGGIIFPLLLTSLFESIGFGWAMRVLALICLVSGLLGIFLVRSRLPPAANATAHPD------------F 256
                 **************9.**************************************************99***999999999999999............9 PP

       MFS_1 201 kallkdpvlwillialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavts 298
                 ++++ + + +   i+++l  f++++ l+++ +y  +  g+s ++  ++  l++l +++++++ l g+++d +g+ +  +++ ll l+a+l +++l++ +
  CCE26720.1 257 RIFKQRTFTL-TTIGIFLLEFALFIPLAYISSY-AQYKGFSeTFSFNL--LPILNAASVVGRALPGYYADVVGPFNVCIFSALLSLAACL-CVWLPLGH 350
                 9999999776.9999999999************.*******6555555..88888888899*************6666655555544444.55666666 PP

       MFS_1 299 savllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +++ l+++ +l+Gfg+g+  +++ +++ +++ +++ g++++ + t+ s+++++g
  CCE26720.1 351 TTSGLIVFALLFGFGSGTSIAIAPVCIGSMCKTQQYGRYYATTYTVVSFACLVG 404
                 89999999999***************************************9998 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 7.3e-11
       MFS_1  47 vaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggl 143
                 v+  + G+ +d +G+  v ++++ll+++++l+ +++  ++   l+v+ +l G+g+g++++++ + i  + + ++ gr+++  ++ +s++ ++g ++gg 
  CCE26720.1 312 VGRALPGYYADVVGPFNVCIFSALLSLAACLCVWLPlgHTTSGLIVFALLFGFGSGTSIAIAPVCIGSMCKTQQYGRYYATTYTVVSFACLVGIPIGGN 410
                 5666669**********99999999999977777545566668*******************************************************9 PP

       MFS_1 144 lasslg..Wravfyilaivsllafvlflll 171
                 ++s+ g  +  + +++++v++ ++v+   l
  CCE26720.1 411 IVSASGgdYNNLTIFAGVVYVASAVF---L 437
                 99666669888888888888888773...2 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8  20.6   4.8e-08   0.00029       5     187 ..      64     239 ..      61     242 .. 0.78
   2 !   12.7  13.5   7.3e-06     0.043      45     185 ..     296     437 ..     268     444 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.8e-08
                 HHHHH.HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS- CS
    Sugar_tr   5 aalgg.llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsv 102
                 ++lg+ +     +g++++++ ++++   ++l + ++ +      +g++ si+ + a++ ++++g++ d++G ++ +++++   v g +++ ++k   ++
  CCE26720.1  64 VVLGSwFALMSAMGLMNTIAVFQAYTLSHQLRHCSAGT------VGWVYSIYTFLAFFCGVYIGPVFDKYGPRWLIIAGCGTIVCGVLCMSFCK---EL 153
                 56677777777778888888888877777777776644......69************************************************...77 PP

                 TGGGGG.HHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-...TTHHHHHHHCCHHHHHHHHHH CS
    Sugar_tr 103 evlivg.RvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsn...adgwrillglqlvpallllil 187
                 ++++++  +l+G+g  l+ + +   i+ + +  +R + +  + la t+G + ++if l l + +++    + +r+l  ++lv+ ll ++l
  CCE26720.1 154 WQFVLSfGILCGFGTSLIFTPC---IAAVGHWFHRRR-GLATGLASTAGGIGGIIFPLLLtSLFESigfGWAMRVLALICLVSGLLGIFL 239
                 8877765889998876655444...555666666643.5556788888888888888888555555877999999999999999888776 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.3e-06
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHH CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsly 143
                 ++ s  ++ i+++ +++G  + g+ +d++G  ++ +++a+l+++ a+l+++ + + ++  liv  +l G+g G+  +++P+ i+ +++++  g+    +
  CCE26720.1 296 ETFSFNLLPILNAASVVGRALPGYYADVVGPFNVCIFSALLSLA-ACLCVWLPLGHTTSGLIVFALLFGFGSGTSIAIAPVCIGSMCKTQQYGRYYATT 393
                 4556667779999**********************999988776.56666777688***********************************99999999 PP

                 HHHHHHHHHHHHHHHHHHHTSS-..TTHHHHHHHCCHHHHHHHH CS
    Sugar_tr 144 qlaitfGilvaaifglglnktsn..adgwrillglqlvpallll 185
                  + ++f  lv++ +g ++   s+   +   i+ g+ +v + ++l
  CCE26720.1 394 YTVVSFACLVGIPIGGNIVSASGgdYNNLTIFAGVVYVASAVFL 437
                 89999999998888777733333356668888888877764443 PP

>> DUF5090  Domain of unknown function (DUF5090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.4      0.11   6.8e+02      65     154 ..     165     231 ..     147     240 .. 0.46
   2 ?   10.2   1.6   9.2e-05      0.55      57     150 ..     271     362 ..     262     369 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.11
     DUF5090  65 lipiyllviaengnkldflksksriifltlik..........ivlsilvdlvvyfselsslfkvflllkiikllitlivllalsistglfilvlsliyl 153
                  +++ l+++ + +   ++++++ +++ +++ +                                            l+ +l+ si  g+ + vl+li l
  CCE26720.1 165 GFGTSLIFTPCIAAVGHWFHRRRGLATGLASTaggiggiifpL---------------------------------LLTSLFESIGFGWAMRVLALICL 230
                 5555555544444444555555555555443333222222222.................................33334444444444444444444 PP

     DUF5090 154 l 154
                 +
  CCE26720.1 231 V 231
                 3 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 9.2e-05
     DUF5090  57 tlllkavllipiyllviaengnkldflksksriifltlikivlsilv.dlvvyfselsslfkvflllkiikllitlivllalsis.tglfilvlsl 150
                 ++ll++ l+ip+  +    +++ ++f +  s+  + +l    +s++  +l  y+ ++  +f+v+++  +++l + l+v l l  +  gl+++ l++
  CCE26720.1 271 IFLLEFALFIPLAYIS--SYAQYKGFSETFSFNLLPIL--NAASVVGrALPGYYADVVGPFNVCIFSALLSLAACLCVWLPLGHTtSGLIVFALLF 362
                 5788899999988888..66666789999998888888..566666615679***************************99888745665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3066.85
//
Query:       CCE26721.1  [L=272]
Description: uncharacterized protein CPUR_00190 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-23   82.5  12.3    2.1e-23   82.5  12.3    2.7  3  Wbp11     WW domain binding protein 11


Domain annotation for each model (and alignments):
>> Wbp11  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5  12.3   1.2e-27   2.1e-23       1      78 []       4      82 ..       4      82 .. 0.98
   2 !    2.7   0.4    0.0094   1.7e+02      19      45 ..     153     179 ..     150     204 .. 0.74
   3 ?   -3.3   0.0      0.68   1.2e+04       6      15 ..     211     220 ..     209     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 1.2e-27
       Wbp11  1 gKslnPadaaRKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLeelessg.kldaadkkklekLekelkavkk 78
                ++s+nP++a+RKa+++k++kK+K+e q++r+++la+k+p++++++i++L+++++ g kl++++++ le Leke+k +kk
  CCE26721.1  4 ERSVNPVQAQRKADKAKAIKKGKAEVQERRNERLARKNPERIQKQIDDLKAISEGGgKLSRNEEQLLEGLEKEIKSIKK 82
                79***************************************************9999*******************997 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.0094
       Wbp11  19 lkKnKkerqkareaklakkdpdeleee 45 
                  ++  +e  ++r++++++ d+++  +e
  CCE26721.1 153 RARRNQEMDQKRDSQARTNDTSTTTKE 179
                 345566677777777777777776665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.68
       Wbp11   6 PadaaRKaqr 15 
                 Pa  +RK  +
  CCE26721.1 211 PAAVQRKLNK 220
                 8888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1063  (0.0592894); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1963.06
//
Query:       CCE26722.1  [L=373]
Description: related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-16   61.3   3.6    1.1e-16   61.3   3.6    1.9  2  Sas10_Utp3  Sas10/Utp3/C1D family


Domain annotation for each model (and alignments):
>> Sas10_Utp3  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   3.6   5.9e-21   1.1e-16       1      87 []      11      93 ..       6      93 .. 0.82
   2 ?   -3.4   0.0      0.91   1.6e+04      24      40 ..     122     142 ..     106     145 .. 0.48

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 5.9e-21
  Sas10_Utp3  1 leslsksldelqeslepllskakaeekkslsdeklsegisllslKnelllaYllnlllylllklsg..velkdhp.......vvkeLvrlRvyleK 87
                l+sl++sl+ +qe+++++ +           +e++++gisll++Knelll+Yl+nl++++llk+++   +++  +       v  +Lv+lR yleK
  CCE26722.1 11 LTSLTQSLSLTQEAVPSIAD-----------IEHPKDGISLLDVKNELLLSYLQNLVFLILLKIRNhkSNNT--DsqilddeVRSKLVELRLYLEK 93
                56788888888888888766...........367899*****************************763333..13466666*************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.91
  Sas10_Utp3  24 aee..kkslsd...eklsegis 40 
                 +++  k s++d   ++  eg+s
  CCE26722.1 122 QGTkaK-SKNDipgSESDEGMS 142
                 223322.222245555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2913.22
//
Query:       CCE26723.1  [L=647]
Description: related to endosomal protein EMP70 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-201  671.0   7.1   1.1e-201  671.0   7.1    1.4  2  EMP70     Endomembrane protein 70


Domain annotation for each model (and alignments):
>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  671.0   7.1  6.3e-206  1.1e-201       1     518 [.      63     603 ..      63     604 .. 0.96
   2 ?   -3.8   1.2      0.21   3.7e+03     301     323 ..     617     639 ..     613     644 .. 0.83

  Alignments for each domain:
  == domain 1  score: 671.0 bits;  conditional E-value: 6.3e-206
       EMP70   1 pydYyd.llpfCkpeeekkkesesLgevLrGdrienspyelkfgkdeeckvlCtkkltkeelkklkelIkngYvvnwlvDnLPva.........tsfvs 89 
                 +ydYy+  ++fC+p+   k  sesLg++L+Gdri++sp++l++ ++e+ck lC+ ++ ++  ++++++I +gY +nwlvD+LP+          t+f+s
  CCE26723.1  63 SYDYYHpAFQFCPPNGGPKYVSESLGSILFGDRIMTSPFDLRMLRNETCKPLCKVSYLEDMSSFINDRIYQGYNLNWLVDGLPAGqkiqdeltgTTFYS 161
                 59****9*******855888889**************************************************************99999999999999 PP

       EMP70  90 aaGfplGfvdkee...ekekyylnnhldfviryhkakeee.kkrivgfevepksvkde.eeeeCpkea.eleleeekkeeeteipftYsVkwresedve 182
                  +Gf lG ++ +e   e+ek  +nnh+++ ++yh+++++  + r+vg+ v+p+s + + e  +C++++  l l++   ++++++ f+YsV wr+s+ + 
  CCE26723.1 162 -PGFALGDYQFSEnenEEEKLSFNNHYEIWVEYHEVNGNPnQLRVVGVVVQPSSKAYSgE-PDCSDKHpALILKD--GDKSQDVYFSYSVFWRKSN-TA 255
                 .6*****998773456899****************98876788***********998744.47**8884588877..5799**************8.** PP

       EMP70 183 wasRwdlylesvedskihwfsiinslvivlllslivavillrtlrkdiarynee............eeee.aqeesgWKlvhgdVfrpPknsllLsvlv 268
                 wa+Rwd+yl +v d+kihwf +i  ++iv++l+l+v+ il+rtl+kdi+ryn+             + e+ +qe+sgWKlvhgd fr+P+++llLsvl+
  CCE26723.1 256 WATRWDKYL-HVFDPKIHWFWLIDTAIIVVILVLTVMSILIRTLKKDISRYNRLdsislddlsgtsAVEDgVQEDSGWKLVHGDAFRTPAQPLLLSVLL 353
                 *********.899****************************************9****999998875556799************************** PP

       EMP70 269 GsGvqlllmalvtlllallgflspsnrgslltvalllyvllgliaGYvsarlyktfggekwkkntlltalllpgllflvffllnlilwakessgalpfg 367
                 GsG+ql++m+ +t+++allgflspsnrgsl t++++ly++lg+++GY+sar+yk ++ge+wk n+ lt++l+pg++f+ ffll+l+lw+k+ssga+pf+
  CCE26723.1 354 GSGAQLFVMTACTIVFALLGFLSPSNRGSLGTIMVVLYTILGFVGGYTSARTYKAMQGEQWKLNIALTPMLVPGIVFTAFFLLDLFLWVKQSSGAVPFT 452
                 *************************************************************************************************** PP

       EMP70 368 tlvlllllwflisvPlvliGsllgfkkkaiehpvrtnqiprqipkqpwylkpllsvllgGilpFgaifielyfilsslwlekiYylfgfLflvflllii 466
                 t+++++++wf+is+Pl+++Gs++gf++++ie pvrtnqiprqip++ +yl+p++s+l++G+lpFgaif+elyfi+ss+w+++iYy+fgfLfl++ l+++
  CCE26723.1 453 TMLVIIAIWFIISIPLSVVGSWIGFRSRQIEPPVRTNQIPRQIPPTTTYLRPIPSMLIVGLLPFGAIFVELYFIMSSIWFSRIYYMFGFLFLCYGLMVV 551
                 **************************9999********************************************************************* PP

       EMP70 467 ttaevtilltYfqLcaedyrWwWrSflvggssalYvflysiyYyftklkisg 518
                 ++a  til+tYf Lc+e+y+W+WrSfl++g+s+ Y+fl +++Y++tk+k+sg
  CCE26723.1 552 VCAAATILMTYFLLCSENYHWQWRSFLAAGMSGGYIFLNCLLYLVTKVKLSG 603
                 ************************************************9987 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.21
       EMP70 301 valllyvllgliaGYvsarlykt 323
                 +++l++vl+g+i+ ++s ++ + 
  CCE26723.1 617 ISFLFFVLAGTIGHFASWWFVRK 639
                 578999*********99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1057  (0.0589548); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 4321.20
//
Query:       CCE26724.1  [L=343]
Description: uncharacterized protein CPUR_00193 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-38  133.0  14.5      1e-38  133.0  14.5    1.6  2  Med4            Vitamin-D-receptor interacting Mediator subun
  ------ inclusion threshold ------
      0.048   14.1   0.1       0.12   12.8   0.1    1.6  1  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> Med4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.1   9.5e+03      37      55 ..       8      26 ..       5      28 .. 0.56
   2 !  133.0  14.5   1.2e-42     1e-38       4     190 ..      33     276 ..      30     296 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.1
        Med4 37 eveslDekikeivksLkey 55
                + e l++ +++++ s+++y
  CCE26724.1  8 HFERLEKALSNLIDSVAKY 26
                5555666666666655555 PP

  == domain 2  score: 133.0 bits;  conditional E-value: 1.2e-42
        Med4   4 aekLlaaddelskslkeleehqknearilqLraeveslDekikeivksLkeyekeLkavpdqenskldtasiklaekrevdseeLLdYArrISkytsv. 101
                 ae+L aad  lsk+l+++eehq+n+ ri++Lr+  + lD++i+++++sL++++k + ++         t++ ++++++++ +eeLL+YA+rISk+t++ 
  CCE26724.1  33 AEELKAADIDLSKGLEKVEEHQNNYLRIQKLRQSSALLDTQIRDTLTSLANARKDIVTTQ--------TTTYPSEPNYPIAYEELLSYAQRISKTTLPp 123
                 89********************************************************99........7888999************************ PP

        Med4 102 ............................................................ppaepkasvtkeptswlde..mlrgaafrPwPtEdeiRm 138
                                                                              ++ +++ + ++p+++ +   +l+g+ f PwP+E +iR+
  CCE26724.1 124 aatlesagmtldtrtqthaqaptpnpepqplpalgpsaptpplsqspamndtptvasdqpTQQSTASTNISLPENLGQYinPLSGQSFFPWPMEASIRT 222
                 *******************************************************99964333344444578998886688****************** PP

        Med4 139 GlLaalqlaaaegeerpgedpeeeeerkseeaegr..reeeerakeeedeleak 190
                 G+La +q + ++g+++ g+dp+ eeerk++e+e+r   ee+e+a++e++e++ +
  CCE26724.1 223 GALASYQMLLERGVDPAGYDPALEEERKRKEEEERkaMEEQEQAEREARERQLR 276
                 *********************************976634444444444444433 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.3e-05      0.12      19      57 ..     224     263 ..     221     281 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
                     HHHHHHHHHHCTSEEEEE-SSTHHCCCCHHGG.BTCCEEE CS
  UDPG_MGDP_dh_C  19 aldiieeLleegaevkiyDPkvkeeaveaele.ekgvevv 57 
                     al+ +++Lle+g++   yDP  +ee++++e e +k +e  
      CCE26724.1 224 ALASYQMLLERGVDPAGYDPALEEERKRKEEEeRKAMEEQ 263
                     6777899********************9987742222322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1960  (0.10932); expected 358.6 (0.02)
Passed bias filter:                      728  (0.0406046); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 2282.55
//
Query:       CCE26725.1  [L=772]
Description: related to alpha-1,2 glucosyltransferase,potassium channel regulator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.3e-109  364.6   0.0   5.1e-107  358.6   0.0    2.4  1  DIE2_ALG10  DIE2/ALG10 family
    3.5e-21   75.0   1.3    6.8e-21   74.1   0.0    2.2  2  QCR10       Ubiquinol-cytochrome-c reductase complex subunit 


Domain annotation for each model (and alignments):
>> DIE2_ALG10  DIE2/ALG10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.6   0.0  5.7e-111  5.1e-107       7     396 .]      88     605 ..      85     605 .. 0.88

  Alignments for each domain:
  == domain 1  score: 358.6 bits;  conditional E-value: 5.7e-111
  DIE2_ALG10   7 DEiFHvpQaqkYckgkfkeWdpkiTTpPGLYllsvlllkllkl.elslselcslavlRlvnllllllllplllrrllkkkkkeskekkavlsalnlalf 104
                 DE+FH+pQaqkYc+g+f +Wd+kiTTpPGLY++svll+k++k+     +  c +++lR++n+l+l++l +l l     +++ es    ++         
  CCE26725.1  88 DEVFHIPQAQKYCEGRFLAWDDKITTPPGLYIFSVLLQKTAKIaGNLWAFDCGASTLRFTNVLGLIVLAYLALLC---RHEIES----RF--------- 170
                 9****************************************9976668899**************9555555443...232222....22......... PP

  DIE2_ALG10 105 PllfffsfLYYTDvlStllvllayllalkkk.........kklsallglvsllfRQTNivWv.vfvaglevvktleeakkkkkkskkeekslk...... 187
                      +s LYYTDv+St++vl a+l +lk+            +++++g+++l++RQTN++W+ v + gle+v+++++ ++++ ++    + ++      
  CCE26725.1 171 --YEAHSGLYYTDVISTAVVLGAFLNHLKRVgrdrsswtnDLMTIFFGVAALFMRQTNVFWIvVWMGGLEAVHAIKTLRPERVDRPFMPTLTAqlkfsy 267
                 ..34579********************99996666555433445******************8889999***999999999988776666554899*** PP

  DIE2_ALG10 188 ................eledllklllsllsslkkllkkllkilkkllpyllvlvlFaaFvvwNggivlGdksnHeatlhlpQllYfllfiaffslplll 270
                                  ++d+l +l+sl  ++   l+++++++++++p+++vl++F+ Fv+wNgg+vlGdksnH+at+hl+Q+lY+++f+affslplll
  CCE26725.1 268 wrysvgdvhdaplglaWPDDMLLTLISLGIAA---LHNPVRVIRQIWPHISVLIAFVGFVAWNGGVVLGDKSNHVATIHLAQMLYIWPFFAFFSLPLLL 363
                 ************98887777888888777755...8899************************************************************ PP

  DIE2_ALG10 271 skll........................................................klkellkallklsllslll........tllllllilliv 305
                 + ++                                                        +        l+++ l++++        ++++l++++++v
  CCE26725.1 364 PYAVplfdavialfrgkarhsaiegsseqsisgkgiasegdvaprsrlgredsssarlspA--------LRTACLMVASplpiwllyVTATLAASAAVV 454
                 87779************************************99999999887544433322........22222222225666777688999999**** PP

  DIE2_ALG10 306 kkftivHpflLADNRHYtFYiwrrllkrhplikyllvpvYllslwlvlealaksks........................................... 361
                 +++tivHpf+LADNRHY+FYi+r++++r  l++ ll++ Y+ls w+v+ +la  +                                            
  CCE26725.1 455 NFNTIVHPFTLADNRHYMFYIFRYTIRRGDLFRLLLIIPYTLSRWMVWGTLAGCTDwiaptrsvlsssarysvfqptattsnasrtiaapisgqkdgqa 553
                 ***************************************************877779****************************************** PP

  DIE2_ALG10 362 .................vllvlalllatllslvpapLlEpRYfiiPyvllrl 396
                                  +++ l++ll+t+lslv+apL+EpRYfiiP+v++rl
  CCE26725.1 554 pelaetdplamscgpcsTSTGLIFLLTTALSLVTAPLVEPRYFIIPWVMWRL 605
                 **************************************************97 PP

>> QCR10  Ubiquinol-cytochrome-c reductase complex subunit (QCR10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.0   7.6e-25   6.8e-21       2      61 ..      27      87 ..      26      88 .. 0.96
   2 ?   -3.2   0.3         1   9.2e+03      16      25 ..     212     221 ..     210     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 7.6e-25
       QCR10  2 ggitlktltrygptlalfGgaagvavlfftsgvPrvqkdiLqkiPvigsyf.kkeippeDn 61
                +g +++t+ r++++++ fGgaa+vavl+f+s++P v++diLq+iP++g+yf k+e++p+Dn
  CCE26725.1 27 KGANFTTISRTALKAGSFGGAAAVAVLLFASSIPIVKRDILQNIPLVGRYFvKQEVHPQDN 87
                6899***********************************************8888*****9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1
       QCR10  16 lalfGgaagv 25 
                  ++fG+aa++
  CCE26725.1 212 TIFFGVAALF 221
                 5789999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 4925.33
//
Query:       CCE26726.1  [L=304]
Description: uncharacterized protein CPUR_00195 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-36  125.4   0.0    3.3e-36  125.1   0.0    1.1  1  Abhydrolase_3  alpha/beta hydrolase fold
    9.3e-08   31.3   0.0    1.3e-07   30.8   0.0    1.2  1  Say1_Mug180    Steryl acetyl hydrolase
  ------ inclusion threshold ------
       0.13   11.5   0.0       0.64    9.2   0.0    1.9  2  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.0   5.5e-40   3.3e-36       1     209 [.      79     279 ..      79     281 .. 0.93

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 5.5e-40
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardeg 96 
                    ++y+HGG f+++ ++ h++l++ l+++l+a++  + Y lAPe+++    +d la+l+ + +   + + d + ++ aGdSaG  l +a++++a +eg
     CCE26726.1  79 ILYVHGGSFLFEISSNHWTLIALLVERLHARITVPIYPLAPEKKL----NDQLAMLQPIYDDMVASSGDDTPVIAAGDSAGSCLILALTQEALQEG 170
                    69****************************************985....788999999999977999***************************** PP

                    ---EEEEEEESE-SSTSSTTSHHHHHCHHT.TTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS-SST---EEEEEETT-TTHHHHHHHHHHHH CS
  Abhydrolase_3  97 epkvagqvliyPvtdlertesesikkaeel.adgplltraaldlfwrlylpeadrddplaspllaedlsglpptlvvvaefDplrdegeayaerlr 191
                    ++  ag++li Pv+d++  ++es+k    l  ++p l    ld+ ++l  ++ ++ dp+aspll+ ++++lpp++v++ae+D+l  +++ + ++ r
     CCE26726.1 171 KSVAAGLMLITPVVDVTLRNEESHK----LsPRDPSLDIVGLDESIQLARGDRSVYDPRASPLLG-EVDRLPPMMVLTAENDLLGPDARLFVDKAR 261
                    *99***********99444445553....22566999****************************.9***************************** PP

                    HTT--EEEEEETTEETTG CS
  Abhydrolase_3 192 aagvevelieyegmvHgf 209
                    aag ev+++e +gm+H++
     CCE26726.1 262 AAGREVTHVEGKGMMHVW 279
                    ****************98 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   2.2e-11   1.3e-07      92     259 ..      46     208 ..       5     216 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 2.2e-11
  Say1_Mug180  92 ifdkkllnqdkikskfvwlrkv.petfdPkvDpvllylHGGgfalklip..vtlvfLsnlrklfpdmailvsDYtvtaakdqskkYplqvleslavyd 186
                   f+++++ +++ +   +  + + p+  +P   + +ly+HGG f +++    +tl+ L    + +    i v+ Y++       kk   q+     +yd
   CCE26726.1  46 SFHSRFIVEERRVDGGYPVYDIsPKSEKPSRVR-ILYVHGGSFLFEISSnhWTLIALL--VERLH-ARITVPIYPLAP----EKKLNDQLAMLQPIYD 135
                  466666655555554555666668888887766.57********99875116666664..44443.3577888**998....44555565555579*9 PP

  Say1_Mug180 187 ylvkskgf.knvvvlGdSaGGnlvLslllklsklnkvvlPkkaiaiSPWlnltildekekeylkasdklDvlcl 259
                   +v s g  + v+  GdSaG  l+L l  +  + +k v   + ++i P +++t ++e+  +    +  lD + l
   CCE26726.1 136 DMVASSGDdTPVIAAGDSAGSCLILALTQEALQEGKSV-AAGLMLITPVVDVTLRNEESHKLSPRDPSLDIVGL 208
                  999888862679999************99955558865.5799************9999988888888998876 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00011      0.64      68     116 ..     136     189 ..     121     208 .. 0.76
   2 ?   -0.4   0.0     0.094   5.6e+02     193     228 ..     238     271 ..     226     282 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00011
  Hydrolase_4  68 kvk.eehpelplfllGhSmGGliallyl...lrypdkva.glilsaPalkikak 116
                   ++ +   ++p++  G S G+ + l+++   l++ ++va gl+l+ P++++  +
   CCE26726.1 136 DMVaSSGDDTPVIAAGDSAGSCLILALTqeaLQEGKSVAaGLMLITPVVDVTLR 189
                  4441555566**************9999665444446777*********99866 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.094
  Hydrolase_4 193 PllllhGeaDkvvdpeasrelyerlgskdktlklyp 228
                  P+++l +e+D + +  ++r ++++++++  +++  +
   CCE26726.1 238 PMMVLTAENDLLGP--DARLFVDKARAAGREVTHVE 271
                  89999999999999..66777777777755554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2188.93
//
Query:       CCE26727.1  [L=596]
Description: uncharacterized protein CPUR_00196 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-89  297.8  20.4    9.2e-89  297.4  20.4    1.0  1  Mg_trans_NIPA    Magnesium transporter NIPA
    1.9e-05   24.8  34.3    3.5e-05   24.0   8.6    3.3  3  EamA             EamA-like transporter family


Domain annotation for each model (and alignments):
>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.4  20.4     1e-92   9.2e-89       4     293 ..      26     313 ..      23     315 .. 0.97

  Alignments for each domain:
  == domain 1  score: 297.4 bits;  conditional E-value: 1e-92
  Mg_trans_NIPA   4 liGvlLavssslfigssfilkkkgllrlarkgevrageGGyaylkevlWwaGlltmavGeaanfaayafaPatLvtPLGalsvivsavlasllLke 99 
                     iG++Lav+s lfig+sf+lkk gllr+ +k +  age Gy+ylk+ +Ww G+ +m+ Ge+ nf+ayaf  a+LvtPLGalsv+++avl+ ++Lke
     CCE26727.1  26 AIGISLAVASGLFIGTSFVLKKVGLLRANEKYNEVAGE-GYGYLKNAFWWGGMTLMIFGEILNFVAYAFTDAILVTPLGALSVVITAVLSAIFLKE 120
                    69*****************************9888865.7******************************************************** PP

  Mg_trans_NIPA 100 kLkllgllGcllailGstvlvihaPkeeeieslkevadllvdpaflvyvilvvvvvlvlilyveprkGktnilvyitlcsllgsltvisvkalgia 195
                    +L ++g++ c+l+i+G++++ +  P+e ++++++ +  ++  p+fl y+ +++v +++ + yv pr Gk+n+lvyi +cs +g l+v+s ++lg a
     CCE26727.1 121 RLSMVGKVACFLCIVGAVIIALNGPRESSVANIEDMRAKFITPGFLSYAGVIIVGSVITAWYVGPRWGKKNMLVYISICSWIGGLSVVSTQGLGAA 216
                    ************************************************************************************************ PP

  Mg_trans_NIPA 196 ikltlaGkaqlkyalawilllvlvicvvlqinyLnkaldifntsivtPvyyvlfttlvivasailfkefleasvddvlgelsGfllvllgvfllha 291
                    i   + G+   k++  w+l + ++ ++ + i +Lnkal++fn+++vtP yyv+ft  +i++s +lf+ f+++   ++++ + Gfl++ +gv+ll+ 
     CCE26727.1 217 IIAWIRGEPEYKHWFLWVLFVFVICTLLTEIIFLNKALNLFNAALVTPTYYVYFTSTTIITSTVLFQGFKGTP-PEIATVVLGFLTICSGVVLLQL 311
                    *********************************************************************9987.68*****************987 PP

  Mg_trans_NIPA 292 tr 293
                     +
     CCE26727.1 312 SK 313
                    66 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.1    0.0055        49       2      25 ..      27      50 ..      26      57 .. 0.88
   2 !   24.0   8.6   3.9e-09   3.5e-05      75     136 ..      80     141 ..      71     142 .. 0.93
   3 !    5.0  13.4    0.0028        25      42     131 ..     212     305 ..     165     310 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0055
        EamA  2 lgillallaalfwaiyfvlskill 25
                +gi la+++ lf +++fvl k++l
  CCE26727.1 27 IGISLAVASGLFIGTSFVLKKVGL 50
                799****************99986 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 3.9e-09
        EamA  75 tvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 ++++ +l f a   t+a  ++++ +l++v+t++ls+++l+e+l+    ++++l+++G+++i 
  CCE26727.1  80 MIFGEILNFVAYAFTDAILVTPLGALSVVITAVLSAIFLKERLSMVGKVACFLCIVGAVIIA 141
                 67888999***************************************************986 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0028
        EamA  42 gillliiallkegklaklslkdw.llllllgllgtvlaf.llffyalkktsasnasl.....itslePvftlilsvlllgekltlkqll.givlillG 131
                 g+   iia++++++     +k+w l++l++ +++t+l+  +++++al+  +a+ +++     +ts++ + +++l   + g ++++ +++ g++ i  G
  CCE26727.1 212 GLGAAIIAWIRGEPE----YKHWfLWVLFVFVICTLLTEiIFLNKALNLFNAALVTPtyyvyFTSTTIITSTVLFQGFKGTPPEIATVVlGFLTICSG 305
                 334467777777777....666415668888888888887999*********9776511111555666666666666666666666654133334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4066.46
//
Query:       CCE26728.1  [L=466]
Description: probable orotate reductase (NADH2) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-69  232.3   0.0    8.2e-69  232.0   0.0    1.1  1  DHO_dh    Dihydroorotate dehydrogenase
    3.9e-05   22.9   1.6     0.0031   16.6   1.0    2.3  2  FMN_dh    FMN-dependent dehydrogenase
     0.0074   15.8   0.9       0.84    9.1   0.0    2.4  2  PcrB      PcrB family


Domain annotation for each model (and alignments):
>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.0   0.0   1.4e-72   8.2e-69       2     295 .]     127     464 ..     126     464 .. 0.90

  Alignments for each domain:
  == domain 1  score: 232.0 bits;  conditional E-value: 1.4e-72
                 G-EEETTEEESSSEEE-TTSSTTSSSHHHHHCTTSSEEEEEEE-SS-B--S-S--EEEETTCTEEEE---S-BS-HHHHHHHHHHHHHHHHCC...... CS
      DHO_dh   2 latkvlglkfknpiglAaGfdkegeeilkllklgfgaieigsvtpkpqeGnpkPrvfrlkedrsvlNslGlnneGldavlekllkrrkeqeek...... 94 
                 l+ +v+g+++ npig++aG+dk+ge ++ l  lg+g++eig +tp pq GnpkPrvfr+++   ++N++Gln++G+d v+++l+ r+ + +++      
  CCE26728.1 127 LSATVFGTQLSNPIGISAGLDKDGEIADVLFGLGAGVVEIGGITPLPQAGNPKPRVFRVPATDGMVNRYGLNSKGADDVARRLRDRVGRFARSlglptq 225
                 6789*************************************************************************************9988****** PP

                 ..................CEEEEEEE-TTS.....S.HHHHHHHHHHHHGGGESEEEEES-SCTCCTSCCCGCHHHHHHHHHHHHHHHH......SSEE CS
      DHO_dh  95 .................kelginlskakkt.....enavddyvevvrkigpfadilelNvSsPntpglrdlqekeelkaillkvvkevs......kvpv 165
                                    l++ ++k+k+t     + ++dd v++v +++p+ad++++NvSsPntpglrdlq+   l++ l++vvke+s       + v
  CCE26728.1 226 avldgaagvppgslqegRLLAVQIAKNKETnerdeKAVADDHVYCVSRLAPYADVVVVNVSSPNTPGLRDLQATGPLTRLLSAVVKEASrtdrktPPRV 324
                 *****************77889999999886666556789*************************************************999987777* PP

                 EEEE-SSSSHHHHHHHHHHHH.HHTECEEEE...BSEE--.....CTTCCGCCCCTTSSEEEEEGGGHHHHHHHHHHHHHHTT....T.S-EEEESS-- CS
      DHO_dh 166 lvKlaPdltdeekkdiadvll.elkldgiivtNttvqrla.....idlkseknvkanktGGlsGkalkdialkvirelykrlk....keipiIgvGGie 254
                 +vK++Pd  + ++ + +++++ + ++dgiiv+Ntt +r+      i+l  ++++   +tGG sG+a+ d+ l ++ + +k l+    ++  + ++GGi 
  CCE26728.1 325 MVKVSPDEDEDTQLEGIVEAVrRSGVDGIIVGNTTKRRTGlvpdgIKLTVKEQKALMETGGYSGPAMFDRTLDLVGRYRKILDaqggSQTVLFATGGII 423
                 *******988877777777666**************9985222225566655555559*****************9887776522226899******** PP

                 SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHHHHHHHHH CS
      DHO_dh 255 sgeDalekieaGAslvqvytalvfegpkiakkikkeleelL 295
                  ge al  ++aGAs+  vyt++v+ g   + +ik e++++L
  CCE26728.1 424 NGEQALRVLNAGASVAMVYTGMVYGGAGTVTRIKSEMKSEL 464
                 *************************************9876 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0023        14      41      65 ..     120     144 ..      60     148 .. 0.81
   2 !   16.6   1.0   5.2e-07    0.0031     232     326 ..     344     464 ..     337     466 .] 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0023
                 SS-SS-B--EEETTEEESSSEEE-- CS
      FMN_dh  41 rdvskvdlsttllGqklslPvliaP 65 
                  ++++++ls t++G++ls P++i++
  CCE26728.1 120 SSAETPELSATVFGTQLSNPIGISA 144
                 456778*****************95 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 5.2e-07
                 HHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH................................SS-EEEESS--SHHHHHHHHHTT-SEEEES CS
      FMN_dh 232 raveaGvdgivvSNHGGRqldgapatidvLpeiveav..............................ggrievlvDgGirrGsDvlkAlalGAdavllG 300
                  + + Gvdgi+v N   R    +p  i+   + ++a+                              g+++ +++ gGi +G+ +l+ l  GA++ ++ 
  CCE26728.1 344 AVRRSGVDGIIVGNTTKRRTGLVPDGIKLTVKEQKALmetggysgpamfdrtldlvgryrkildaqgGSQTVLFATGGIINGEQALRVLNAGASVAMVY 442
                 55678************************999999999*************************99866689999***********************99 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
      FMN_dh 301 RpflyglaagGeeGvervleilrael 326
                   ++yg    G+  v+r+ + +++el
  CCE26728.1 443 TGMVYG----GAGTVTRIKSEMKSEL 464
                 999998....6666777777777766 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00014      0.84       9      41 ..     325     360 ..     318     373 .. 0.79
   2 !    4.8   0.2    0.0027        16     180     207 ..     413     441 ..     397     458 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00014
                 EEEE-TTSS...-CHHHHHHHHCTT-SEEEEECSTC CS
        PcrB   9 ltklDPeee...npdEiveiviesgtDavmigGsqs 41 
                 ++k+ P+e+   + + ive+v +sg D++++g +++
  CCE26728.1 325 MVKVSPDEDedtQLEGIVEAVRRSGVDGIIVGNTTK 360
                 6677777652225789****************9874 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0027
                 SSEEEEESS--SHHHHHHHHCC.SSEEEE CS
        PcrB 180 karlivGGGirsaEkAkevvea.ADvivv 207
                 ++ l+  GGi ++E+A +v++a A v +v
  CCE26728.1 413 QTVLFATGGIINGEQALRVLNAgASVAMV 441
                 67899****************98877554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3355.65
//
Query:       CCE26729.1  [L=449]
Description: related to glu/asp-tRNA amidotransferase subunit A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-71  240.8   0.1    4.8e-71  240.1   0.1    1.4  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.1   0.1   2.7e-75   4.8e-71       2     451 .]      30     428 ..      29     428 .. 0.90

  Alignments for each domain:
  == domain 1  score: 240.1 bits;  conditional E-value: 2.7e-75
                 HHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT.-B-SS--HHHHHHHHTT-EEEEEE CS
     Amidase   2 lveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalen.ypaekDatvverLkkaGavilgkT 99 
                  ++a+l+r+   ++++ a+v+++ ++ l qA++ld+     +++gpLhG+P+ +KD + ++++pt + s+  ++   a  D+  v+ L++aGa+i+gkT
  CCE26729.1  30 YTQALLDRVRLRDPQVRAWVYLDEKAVLDQAKRLDSLPV--DQRGPLHGLPVGIKDVFLTRDMPTRYYSRLHAHdGNAAADSAAVSILRSAGAIIFGKT 126
                 689********************************9975..************************998887765157888******************* PP

                 --SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHH CS
     Amidase 100 nmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsve 198
                  ++efa  +++     gp  NP ++++tpGGSS+GsAAavA ++vplai+t tGGSi  P s++g++G+KPt+g +S +g+ ++++s d+ G+ ar+ve
  CCE26729.1 127 ATTEFASMTEG-----GPCTNPNNPKHTPGGSSSGSAAAVADCQVPLAIATQTGGSIVRPGSLNGCYGFKPTWGTISTEGMGRFSTSADTPGFYARTVE 220
                 *****988765.....88********************************************************************************* PP

                 HHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHH.HHHHHHHHHH CS
     Amidase 199 dlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleeals.lyylilvaea 296
                 d+ +l rv    +  +s s ++          +  +    +++++k++ + ++ p  ++a + a + L++ G++v +v+lp   + +s    ++++ ea
  CCE26729.1 221 DVEMLARVFRLACNMRSASVPV----------SPLTVARSKVAFIKTHVWPKAGPGTHAAWNLAHQILQDHGAQVQDVDLPGAFSKISeWRETVVTQEA 309
                 **********999998888873..........234455679**************************************99999999845566666666 PP

                 HHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCCCCHH CS
     Amidase 297 ssnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlgekdkt 395
                  ++                 +  ++ +  ++  +++vk    +     ++      +l+a    ++lr +++++ + +D++++P+a  +ap+ g     
  CCE26729.1 310 RAA-----------------FLPKYLEDKSKIHNDIVKLVEAQDLPSPQK------VLEAHDGIARLRADWDQIARNYDIIVTPSAVDEAPE-GL---- 380
                 655.................668899999999999999887776655555......5888888889***********************999.33.... PP

                 HCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHHH CS
     Amidase 396 idsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetlL 451
                        + + +f+   +++++   pa++vp      glP+G++v+g ++++  +L
  CCE26729.1 381 -----KDTGIAVFC---TMWTILHAPAMNVPGFRGRCGLPIGLTVVGSRYSDMDVL 428
                 .....345678888...9999**********777799***************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3483.13
//
Query:       CCE26730.1  [L=1033]
Description: probable ubiquitin-protein ligase (E1-like (ubiquitin-activating) enzym) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.7e-113  375.7   0.0    1.9e-76  256.6   0.0    2.4  2  ThiF             ThiF family
    1.7e-93  313.2   2.9    1.7e-93  313.2   2.9    1.5  2  UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
    4.2e-31  107.0   0.1    1.5e-30  105.2   0.0    2.0  2  E1_FCCH          Ubiquitin-activating enzyme E1 FCCH domain
    1.6e-28   99.2   0.3    3.1e-28   98.3   0.3    1.5  1  E1_UFD           Ubiquitin fold domain
    2.7e-24   85.1   0.5    6.6e-24   83.9   0.5    1.7  1  E1_4HB           Ubiquitin-activating enzyme E1 four-helix bu
  ------ inclusion threshold ------
      0.012   16.0   0.0       0.29   11.6   0.0    2.8  2  NAD_binding_7    Putative NAD(P)-binding
       0.19   11.9   0.0         19    5.5   0.0    2.9  2  Mrr_N            Mrr N-terminal domain


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.0   4.8e-37   1.2e-33       1     233 [.      32     412 ..      32     420 .. 0.87
   2 !  256.6   0.0   7.5e-80   1.9e-76       1     240 [.     425     923 ..     425     927 .. 0.98

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 4.8e-37
                 THHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   1 ysrqlallgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritd 99 
                 ysrql++lg++ ++++ +s vl+vG+ glG e++kn+al+Gv++ltl D   +e+ +l+ qf  ++ed+Gkp+ ++ + +++e+n ++ v+ + ++  d
  CCE26730.1  32 YSRQLYVLGHEAMKRMGASNVLIVGLKGLGVEIAKNIALAGVKSLTLYDPAPVEIADLSSQFFLTPEDVGKPRHDATTPRVAELNAYTPVKIHDASSLD 130
                 89********************************************************************************************99999 PP

                 .CCS-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH................. CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
        ThiF 100 .etvleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct................. 180
                  ++   + + ++++Vv++   +++++ + ++c++kgi ++ a+t g+ g +++ + +k ++++ +          ++  +                   
  CCE26730.1 131 gDM---SQFDKYQVVVLTNSPLQSQKVIGDYCHSKGIYVVVADTFGLFGSIFCDFGDKFTVIDPTG---------ETPLSGIvagideeglvsaldetr 217
                 665...789********************************************9633333333332.........221111122222333333444445 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  CCE26730.1 218 hgladgdyvtfseiegmeglniceprkitvkgpytfsigdvsglgqykrggmyqqvkmptninfksfsaalkepefvmsdfakfdrpqqlhlgfqalqa 316
                 55555556666788888888888899999999999999999999999999999999999999999999******************************* PP

                 ...............................................HHHCTE-B-HHHHHHHHHHHHHHHHHHHTTBCGGGCCEEEECCTTTTEEEEE CS
                 ...............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 181 ...............................................siagnipaiatttavvaglaalellkllsgkeklenslltqvdllesrfenv 232
                                                                ++ g    ++++ a+++g++a+e+lk++sgk +   +++ ++d les  +++
  CCE26730.1 317 fqilkgrlpnpmddddaavvlgaakkfaaeeklqiefdekllkelsyQARG---DLSPMAAFFGGITAQEILKAVSGKFQPICQWM-YFDSLESLPTST 411
                 ***************************************999999988888...9**************************99999.788877765555 PP

                 C CS
                 x RF
        ThiF 233 e 233
                 +
  CCE26730.1 412 K 412
                 4 PP

  == domain 2  score: 256.6 bits;  conditional E-value: 7.5e-80
                 THHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTT.....EEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTS..EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
        ThiF   1 ysrqlallgedgqekLrdskvllvGaGglGsellknLalsGvg.....kltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdv..evea 92 
                 y+ q+a++g++ qek+++ + +lvGaG++G+e+lkn+a++G+g     k+ ++D+D ie+sNlnRqflfr +d+Gk K+++aa+a+q++npd+  ++++
  CCE26730.1 425 YDGQIAVFGTEYQEKIANLTQFLVGAGAIGCEMLKNWAMMGLGtgpkgKIFVTDMDSIEKSNLNRQFLFRADDVGKMKSDCAANAVQRMNPDLagHIQT 523
                 789************************************************************************************************ PP

                 EES-CCG.CC..S-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH........ CS
                 xxxxxxx.xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
        ThiF  93 vteritd.et..vleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct........ 180
                 +++r+++ ++  ++e+++es+D V +alDn+ear +v+r+cv+ ++pl+e+gtlg++g+++v++p+ t+ y      s++dp+ek++p+ct        
  CCE26730.1 524 FKDRVSAdTEniFNEDFWESLDGVTNALDNVEARTYVDRRCVFFRKPLLESGTLGTKGNTQVVLPHLTESYA-----SSQDPPEKEFPMCTirsfpnri 617
                 *****99544899**************************************************976666665.....558******************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  CCE26730.1 618 ehtiawakdymfekcfvkapqtvnlyltqpnfmettlkqggnqketletirnyltterpstfedciawartqfetefnnkiqqllynfpkdsttssgtp 716
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  CCE26730.1 717 fwsgpkrapdaldfdinnpthlgfviaaanlhafnynikppgndksiyarelenimvpdftpdanvkiqaddkepdpnmetnedddefgkiiasipapd 815
                 *************************************************************************************************** PP

                 ...............................................HHHCT.E-B-HHHHHHHHHHHHHHHHHHHTTBCGGGCCEEEECCTTTTEEEE CS
                 ...............................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 181 ...............................................siagn.ipaiatttavvaglaalellkllsgkeklenslltqvdllesrfen 231
                                                                +iag+ ipaiattta+v+gl++lel+k+++gk++le++++ +++l++++f +
  CCE26730.1 816 tlpgfqlqpvdfekdddsnhhidfitacsnlraenykieaadrhktkFIAGKiIPAIATTTALVTGLVVLELYKVIDGKKDLEQYKNGFINLALPFFGF 914
                 *************************************************************************************************** PP

                 ECCEEEEEE CS
                 xxxxxxxxx RF
        ThiF 232 velerakks 240
                  e+ +++k 
  CCE26730.1 915 SEPIASPKV 923
                 ***998875 PP

>> UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.9   7.5e+03      65     107 ..     500     542 ..     482     543 .. 0.80
   2 !  313.2   2.9   6.5e-97   1.7e-93       1     252 []     614     862 ..     614     862 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.9
  UBA_e1_thiolCys  65 ktfedCvkwArekfeklFnnkikqLlynfPkdsktsdGapFWs 107
                      k  +dC + A+++++     +i+    +  +d+++   ++FW+
       CCE26730.1 500 KMKSDCAANAVQRMNPDLAGHIQTFKDRVSADTENIFNEDFWE 542
                      4557899999999999999999999999999999999999996 PP

  == domain 2  score: 313.2 bits;  conditional E-value: 6.5e-97
  UBA_e1_thiolCys   1 PneieHtieWArd.kFeglFekkpeevnkflkdkekfleelekekeeekletlekvlkllvkerpktfedCvkwArekfeklFnnkikqLlynf 93 
                      Pn+ieHti+WA+d  Fe++F+k+p++vn +l +  +f+e++ k+++++k etle+++++l++erp+tfedC++wAr +fe++Fnnki+qLlynf
       CCE26730.1 614 PNRIEHTIAWAKDyMFEKCFVKAPQTVNLYLTQ-PNFMETTLKQGGNQK-ETLETIRNYLTTERPSTFEDCIAWARTQFETEFNNKIQQLLYNF 705
                      9************77****************54.69***********99.9******************************************* PP

  UBA_e1_thiolCys  94 PkdsktsdGapFWsgpKraPkplefdlenelhleFvvaaanLraqvygikg.erdeeaiakllskvkvpefkpkekvkiavsdeeakeeeeeee 186
                      Pkds+ts+G+pFWsgpKraP++l+fd++n++hl Fv+aaanL+a++y+ik+  +d++ +a+ l+++ vp+f+p+++vki+++d+e + + e++e
       CCE26730.1 706 PKDSTTSSGTPFWSGPKRAPDALDFDINNPTHLGFVIAAANLHAFNYNIKPpGNDKSIYARELENIMVPDFTPDANVKIQADDKEPDPNMETNE 799
                      **************************************************95489999999*************************88887899 PP

  UBA_e1_thiolCys 187 deeeleelaeeleklakkessla.lklkpieFeKDddtnfhidfitaasNlRArnYkIkeadrlkvK 252
                      d++e+ ++++++++    +++l  ++l+p++FeKDdd+n+hidfita+sNlRA+nYkI++adr+k+K
       CCE26730.1 800 DDDEFGKIIASIPA----PDTLPgFQLQPVDFEKDDDSNHHIDFITACSNLRAENYKIEAADRHKTK 862
                      9*************....66666799****************************************9 PP

>> E1_FCCH  Ubiquitin-activating enzyme E1 FCCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.6   4.2e+03      32      61 ..     114     140 ..     112     141 .. 0.60
   2 !  105.2   0.0   5.8e-34   1.5e-30       1      71 []     205     275 ..     205     275 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.6
                 CGGGS--EE-EE-SSSEEE----TTS-SEE CS
     E1_FCCH  32 elNgkeprkikvlgpytFeIgdtsnfspYk 61 
                 elN  +p+ki+    +++  gd s+f +Y+
  CCE26730.1 114 ELNAYTPVKIHD--ASSLD-GDMSQFDKYQ 140
                 677776555544..44433.4788888886 PP

  == domain 2  score: 105.2 bits;  conditional E-value: 5.8e-34
                 .TTSEEEESTT--S---TT-EEEEES-BT-CCGGGS--EE-EE-SSSEEE----TTS-SEEES-EEEEE-- CS
     E1_FCCH   1 dnpgvVtvleesrhgledgDyVtFseveGmtelNgkeprkikvlgpytFeIgdtsnfspYkrgGivtqvKq 71 
                 d++g+V+ l+e+rhgl dgDyVtFse+eGm++lN +eprki+v+gpytF+Igd+s +++YkrgG+++qvK+
  CCE26730.1 205 DEEGLVSALDETRHGLADGDYVTFSEIEGMEGLNICEPRKITVKGPYTFSIGDVSGLGQYKRGGMYQQVKM 275
                 589*******************************************************************8 PP

>> E1_UFD  Ubiquitin fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.3   1.2e-31   3.1e-28       1      93 []     938    1028 ..     938    1028 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 1.2e-31
      E1_UFD    1 WDrlevegeitlkelldyfkekkklevsmislgvsllYasflpkkkdkerlklklselveevtkkkipphqkyldlevsvedeegedvevPlv 93  
                  WDr+eve ++tl++lld+f+ +k+l++ m+s+gvsll+a+f  ++k ker++ kls+lve+v+k++ip+hq+++++e+++ed  + dvevP++
  CCE26730.1  938 WDRFEVE-DMTLQQLLDHFS-SKGLNILMLSSGVSLLFANFHAPAKMKERMTWKLSKLVETVSKQPIPEHQREVIFEMVAEDMADVDVEVPYI 1028
                  *******.************.9************************************************************999******98 PP

>> E1_4HB  Ubiquitin-activating enzyme E1 four-helix bundle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.5   2.6e-27   6.6e-24       1      69 [.     276     343 ..     276     344 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 2.6e-27
                 -EEE----HHHHTTS-.-BE-S-GGGTTCHHHHHHHHHHHHHHHHCTT----TT-HHHHHHHHHHHHHH CS
      E1_4HB   1 PktlsFksleesleePeeflisDfakfdrpeqlHlafqALhaFeeehgrlPrplneedaekvvalakel 69 
                 P++++Fks++++l+eP ef++sDfakfdrp+qlHl+fqAL+aF+  +grlP+p++++da+ v+  ak++
  CCE26730.1 276 PTNINFKSFSAALKEP-EFVMSDFAKFDRPQQLHLGFQALQAFQILKGRLPNPMDDDDAAVVLGAAKKF 343
                 899*************.**********************************************999975 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.29       8      94 ..      50     171 ..      44     204 .. 0.71
   2 ?    0.8   0.0      0.27   6.8e+02      48      84 ..     820     859 ..     776     865 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleag.akvtvvapevkeele..............................elvklaeee........lekd...leg 61 
                     +vl+vG   ++ + +++++ ag + +t+++p+  e+++                                               l++d   +++
     CCE26730.1  50 SNVLIVGLKGLGVEIAKNIALAGvKSLTLYDPAPVEIADlssqffltpedvgkprhdattprvaelnayT-------PvkihdassLDGDmsqFDK 138
                    6899**********9*99999996679**99996444446666666666666655555555444332222.......0222222224555343555 PP

  NAD_binding_7  62 adlviaatddrelneriaeaakarrilvnvadk 94 
                    +++v+ + +  + ++ i +++++++i v vad+
     CCE26730.1 139 YQVVVLTNSPLQSQKVIGDYCHSKGIYVVVADT 171
                    5677777777777777999*************6 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.27
  NAD_binding_7  48 vklaeeelekd...legadlviaatddrelneriaeaaka 84 
                    ++l++ ++ekd      +d++ a+ + r++n +i +a + 
     CCE26730.1 820 FQLQPVDFEKDddsNHHIDFITACSNLRAENYKIEAADRH 859
                    3455666765534466799*************99887654 PP

>> Mrr_N  Mrr N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0075        19      48      79 ..     615     646 ..     602     648 .. 0.89
   2 ?    2.9   0.0     0.047   1.2e+02      38      61 ..     667     690 ..     660     693 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0075
       Mrr_N  48 trfknrvgWartyLkkagllespkrgvwkiTe 79 
                 +r++  ++Wa+ y+ +  +++ p+   + +T+
  CCE26730.1 615 NRIEHTIAWAKDYMFEKCFVKAPQTVNLYLTQ 646
                 79999******************998888886 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.047
       Mrr_N  38 raellpsgkqtrfknrvgWartyL 61 
                  + +l++ ++++f++ ++Wart+ 
  CCE26730.1 667 IRNYLTTERPSTFEDCIAWARTQF 690
                 45566788899**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1033 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.40
# Mc/sec: 7767.49
//
Query:       CCE26731.1  [L=454]
Description: related to ECM4 protein (involved in cell wall biogenesis and architecture) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-23   81.0   0.0    1.3e-22   79.8   0.0    1.6  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    1.8e-14   53.5   0.0    8.5e-14   51.3   0.1    2.0  2  GST_C_2   Glutathione S-transferase, C-terminal domain
    1.3e-05   25.5   0.0    0.00046   20.6   0.0    2.6  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    5.5e-05   23.3   0.0    0.00013   22.1   0.0    1.6  1  GST_C     Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.016   15.8   0.0       0.03   14.9   0.0    1.4  1  GST_C_5   Glutathione S-transferase, C-terminal domain
      0.058   13.6   0.0       0.13   12.5   0.0    1.6  1  GST_C_3   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   4.5e-26   1.3e-22       1      69 [.     168     272 ..     168     273 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 4.5e-26
                 S-HHHHHHHHHHHHCT--EEEEEE.H...-TTSHHHHH..................................HHHCTTTSSSEEE-CTTE..EEESHHH CS
     GST_N_2   1 aCPwahRvlialalkglediisvv.vlepkgfekseef..................................prlnprgtVPvLwdkdgq..vineSse 62 
                 aCPwahR+lia++lkgledii+++ v+++ g+  ++ f                                  +++ +r+tVPvL dk+++  v neSse
  CCE26731.1 168 ACPWAHRTLIARKLKGLEDIITFSvVHWHLGEG-GWRFvtkdenepgeqvipdpldghegythlkdvyfeseKNYEGRFTVPVLYDKKAKriVSNESSE 265
                 7**********************7799999995.455566666666777799999999999**************************88889******* PP

                 HHHHHHH CS
     GST_N_2  63 Ilrylet 69 
                 Ilr+l++
  CCE26731.1 266 ILRMLGN 272
                 *****87 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.75   2.2e+03       7      30 ..     173     198 ..     144     203 .. 0.79
   2 !   51.3   0.1   2.8e-17   8.5e-14       3      68 ..     322     396 ..     320     397 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.75
                 HHHHCCHCHHHCTTT---SS...CTT CS
     GST_C_2   7 aleqldaaldaleahLadsp..flfG 30 
                 +++ + ++l+ le++++ s+  + +G
  CCE26731.1 173 HRTLIARKLKGLEDIITFSVvhWHLG 198
                 77888999999999999887665555 PP

  == domain 2  score: 51.3 bits;  conditional E-value: 2.8e-17
                 HHCHHHHHCCHCHHHCTTT---SS....CTTCS--HHHHHHHHHHHHHHHHHHS-......---TT-HHHHHHHH CS
     GST_C_2   3 averaleqldaaldaleahLadsp...flfGdqptlaDialapflvrlraagpgf......direaypnlraWle 68 
                 a+e  + +l++ald  e+hL  ++   ++fG q+t  Di+l+++l+r++ ++ ++      dir++yp l++W++
  CCE26731.1 322 AYEHNVIALFEALDRAEKHLSAQTdgpYYFGQQLTETDIRLFVTLIRFDPVYVQHfkcnirDIRSGYPALHRWMR 396
                 567778899************555556************************99999*****************97 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.5e-07   0.00046       1      72 [.     163     275 ..     163     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.5e-07
                 EES-TTSHHHHHHHHHHHHHT--....EEE.E---..................................TTTTHHHHHHH-TT--SSEEETT.S-..EE CS
     GST_N_3   1 LygfpaSpyarrvrlaLnekglp....vev.vevt..................................pgehdeellaknplgkvPvLedd.ge..al 57 
                 Ly ++a+p+a r  +a ++kgl+    + v ++ +                                  ++  +e+ +++ ++ +vPvL+d  ++  + 
  CCE26731.1 163 LYVSYACPWAHRTLIARKLKGLEdiitFSVvHW-HlgeggwrfvtkdenepgeqvipdpldghegythlKDVYFESEKNYEGRFTVPVLYDKkAKriVS 260
                 9*********************87755333133.258899999999999***********999987666666677777777*********986446777 PP

                 ESHHHHHHHHHHHH- CS
     GST_N_3  58 tdSlaIidyLeelyp 72 
                  +S++I++ L ++++
  CCE26731.1 261 NESSEILRMLGNEFD 275
                 8********998886 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.5e-08   0.00013      22      88 ..     321     397 ..     294     399 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.5e-08
                 HHHHHHHHHHHHHHHHHHHHHH...TSSSSSTTSSCHHHH.HHHHHHH....HHHHHTTTTT..TTTSHHHHHHHHH CS
       GST_C  22 elvdealekvaevlsaleeelk...kqdylvGdkltlADi.alvpiln....wlqrlglafg..qekfpnlkawler 88 
                  +++ +  +++e+l+++e++l+   +  y+ G++lt  Di ++v++++    ++q+++ ++   + ++p+l++w+ +
  CCE26731.1 321 DAYEHNVIALFEALDRAEKHLSaqtDGPYYFGQQLTETDIrLFVTLIRfdpvYVQHFKCNIRdiRSGYPALHRWMRN 397
                 56677777899***********999999************7777888799999999999999************986 PP

>> GST_C_5  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0     1e-05      0.03      47      80 ..     343     376 ..     320     401 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-05
                 HTSSSSECCECC--HHHHHHHHHHHHHHHHCCCC CS
     GST_C_5  47 hqgeGPyfldkelsmadvavvPflvrlkavlsyy 80 
                  q++GPy+ +++l+ +d+ +   l+r+ +v  ++
  CCE26731.1 343 AQTDGPYYFGQQLTETDIRLFVTLIRFDPVYVQH 376
                 58**************************997654 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.2e-05      0.13      31      71 ..     332     378 ..     302     410 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.2e-05
                 CHHHHHHHHHHC.HGTSSSSTTS--HHHHHHHHHHHHHHHH.....T CS
     GST_C_3  31 kflkyfekvlkk.kgggylvgdklTyADlalfqvldgleea.....e 71 
                 + l++ ek+l+    g+y +g++lT  D+ lf  l  +  +     +
  CCE26731.1 332 EALDRAEKHLSAqTDGPYYFGQQLTETDIRLFVTLIRFDPVyvqhfK 378
                 45777788888625556***************988766655555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3283.71
//
Query:       CCE26732.1  [L=849]
Description: uncharacterized protein CPUR_00201 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1049  (0.0585086); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.39
# Mc/sec: 6452.84
//
Query:       CCE26733.1  [L=728]
Description: related to syntaxin-binding protein sec1-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-115  387.9   0.0   1.5e-115  387.7   0.0    1.0  1  Sec1      Sec1 family


Domain annotation for each model (and alignments):
>> Sec1  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.7   0.0  8.3e-120  1.5e-115       1     574 [.      26     598 ..      26     599 .. 0.82

  Alignments for each domain:
  == domain 1  score: 387.7 bits;  conditional E-value: 8.3e-120
                 EEEEE-HHHHHHHHTT--HHHHHTTTEEETT..T.--S-.....BTTSEEEEEE-S-HHHHHHHHHHHHSS-SBS-EEEEESS---HHHHHHHHH..S. CS
        Sec1   1 KvLvlDkelskilssvlkvsdlleegVtkieklk.krepskrealphlkaiyflrptkenidrlakdfisarrykeyhifftprlseslleglakade. 97 
                 K+L++D++++ki++ v++ +++l+ ++  ie+++ +rep      p+++aiy+++p ++ +d+l++df+  rry++ ++++t  l+ +l ++l+   + 
  CCE26733.1  26 KCLIVDENSRKIVDNVVTEDEVLNINIATIERIEeRREP-----NPSMDAIYIISPEPHIVDCLLADFET-RRYRRGYLVWTGLLDPTLRRKLD---Df 115
                 89*********************66***99999889999.....**********************9955.***********999977766777...33 PP

                 G.GGGEE..EEE----SEEEETTEEE-S.TTHHHHSTTG.....GG.......--HHHHHHHHHHHHHHH-..--EEEE-TT-.....HHHHHHHH... CS
        Sec1  98 evvkkvk..lkelnldfvplesdlfsln.pelplsfrdlyldndnsaleeeieslldriakgLlsvllslekkiPiirykgsa.....asmvakklade 188
                   +++++   + l++df+p es+l++++ p    sf+ ly    ++  ++ i ++++++a+ ++ v+++l + +P++r+++++     as ++ +la+ 
  CCE26733.1 116 PGIRQLRaaSQTLFIDFYPRESHLITFRdP---WSFPILYH---PA-CNHLIPKHMQSLAQRIAGVCITL-GEYPRVRFYRPKnavheASVLCSHLARF 206
                 444544443458***************653...45555542...12.23479******************.77*******9999****99999999999 PP

                 ........HHHHTTT...--SS--EEEEE-GGG-SSTTTS---BHHHHHHHHS--BTEEEEEE--SS.......SEEEEEE--TT..-TTHHHHTTSBH CS
        Sec1 189 lkekids.kknfese...ssrqrpvLiIlDRsvDlvtpllhqwTYqaliddllgglnnnnvvleeep.......keekeaelvesssDeffaelrhlnf 276
                 ++e++d   + ++++   s+r++++Li++DRs+Dl++pllh++TYqa+++dll+ +++  +v+++++       ++ek++el+++  D++++++rh ++
  CCE26733.1 207 VQEELDGyAHWNPNFpppSNRPQSTLIVTDRSMDLMAPLLHEFTYQAMAHDLLP-IKDADKVTYRTKinagmadETEKDMELSDK--DKIWVDNRHRHM 302
                 997777655555555666***********************************9.755555665555678987777777777777..************ PP

                 HHHHHHHHHHHHHHHHHH.HTTT....-.TTHHHHHHHHHH-GGGHHHHHHHHHHHHHHHHHHHHS-HHH.HHHHHHHHHHHH..SS--.B--..-HHH CS
        Sec1 277 gevgeklkkeakeyqeen.ekkrn.gak.esiadlkkfvaklpelqeekkklskHtnlaeellkevkkrkldellelEqdlat..gesdkkikekkvie 370
                 ++ ++kl+ +++++  en ++++      +s++ +++++a lp++qe+k+ +s+H+++a+e++++++ +kl +l+++Eq++ t  +  +++ k k+v+e
  CCE26733.1 303 KDTIDKLMGDFQKFLDENpHFTNDgA-DaTSLNAIREMLAGLPQFQEMKEAYSLHLTMAQECMNIFQHNKLPDLASIEQTMSTglD--EDSRKPKNVLE 398
                 **********************9955.459*****************************************************543..35666779999 PP

                 HHHHH..-TTS-H.HHHHHHHHHHHH...-B.-HT--GG....GGHHHH....GGGGG........---.BGGG-------............------ CS
        Sec1 371 eliad..deptseledklRLlllyslvegglkekelkellrelvqsaly....gleylktlrsleklgllkkrkgkksskkkss.....lklikeeede 458
                  +++   de + +  d+lRL+++y+l++gg+  +++++l   l +++      g e++  l+ l + +      ++ +     +     + +  ++   
  CCE26733.1 399 TIVSLldDEAILP-SDRLRLIIMYILYRGGVIMEDVQKL---LFHAS-LpsqdG-EIITNLELLGGKTS--HVLKEPR-----QvppplFPRDPKSPPP 484
                 9999897666666.6************99*977777766...55544.235533.45544444443211..1222222.....1344568888888888 PP

                 ---S...TT-----HHHHHHHHHTTT-S-TTTS-BSS-GGGS----....----------------------S-EEEEEEEEEE-HHHHHHHHHHT... CS
        Sec1 459 esnydlsgvsryaPllvrlvealikgkklssespslskkdpsqees....ssslrsakktnsaskesaekkkkqrviVffvGGvTysEiralrllskqe 553
                 +++y    +sry P+++ +++al kg+++++ +p+++++  ++e+     ++slr  +++++a   ++  +++qr++Vf++GG+TysE ra+ ++s+  
  CCE26733.1 485 SEEY---ALSRYEPAVQSMLDALTKGTLDQNVFPYVKPPMDPNEDFlaaqGGSLRAGRPNWAAAG-RRPPENRQRIMVFMAGGATYSENRACYQVSR-- 577
                 8888...7899*************************9999888888***6555555555555544.444448999*****************99998.. PP

                 TSSSEEEEEEEEE--HHHHHH CS
        Sec1 554 kknkeiiigttsilnpksfle 574
                 +k+++++++t+++l+p+ +++
  CCE26733.1 578 EKGRDVVLITSHMLTPQLYVR 598
                 569*************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.37
# Mc/sec: 5879.68
//
Query:       CCE26734.1  [L=264]
Description: uncharacterized protein CPUR_00203 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-07   29.8   0.2    7.4e-07   29.0   0.2    1.5  1  G-patch   G-patch domain


Domain annotation for each model (and alignments):
>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.2   4.1e-11   7.4e-07       2      45 .]     164     209 ..     163     209 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 4.1e-11
     G-patch   2 sniGvkmLqkmGWkp..GqGLGkkeqGiaePieakikkdraGlGak 45 
                 s++G + L++ GW p   +GLG++++G + Pi+ak k+d  G+Ga+
  CCE26734.1 164 SRMGLRALESLGWDPdaRRGLGREGEGVRYPIKAKAKDDTLGVGAR 209
                 6789999********7779*************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1893.41
//
Query:       CCE26735.1  [L=626]
Description: related to alkaline phosphatase D precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-102  343.7   4.6   1.3e-102  343.4   4.6    1.1  1  PhoD             PhoD-like phosphatase
    1.5e-26   92.7   0.1    3.9e-26   91.4   0.1    1.8  1  PhoD_N           PhoD-like phosphatase, N-terminal domain
     0.0056   17.2   0.0      0.016   15.8   0.0    1.8  1  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> PhoD  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.4   4.6  2.2e-106  1.3e-102       1     350 []     202     554 ..     202     554 .. 0.94

  Alignments for each domain:
  == domain 1  score: 343.4 bits;  conditional E-value: 2.2e-106
        PhoD   1 lavvSCqnyeagyfnayrelaeeedlDlvlhlGDyiYeygpgeyaseaaelgreveppkeivtladYReryaqyktdadlqaahaaapfivvwDDHEva 99 
                 +av+SC+ny agyfn+y ++a++++ D+v+hlGDy+Yeyg        +e +r+++p+k + tl+dYR+r+ ++++d+dlq + ++ ++i++wDDHE+ 
  CCE26735.1 202 FAVFSCSNYAAGYFNVYGNAARKDEHDYVIHLGDYMYEYG--------KEGERATKPTKMLWTLHDYRTRHGLHRSDPDLQLLSQNSAWITTWDDHEFS 292
                 89*************************************6........67788889999**************************************** PP

        PhoD 100 Nnswsggaenhqeetegdf.........ekrkaaAlqAyfEwmPireakpgeeeriyrsfeyGdladlflLDtRqyrrdqavsyegdeleaaeaevkdp 189
                 +n +++g    + +te +f         ++rk  A++ yfEwmPir+++ ++ +r++rsf++G+l+dl++LDtR+y+r+ +  y+  ++++     +dp
  CCE26735.1 293 DNGYRDGFVGLN-NTEDSFlksgagisvDTRKVHAVRSYFEWMPIRQTDLDDGLRVWRSFQMGKLLDLVILDTRNYDRSITDLYW--NKHYISLISDDP 388
                 ******999999.777777777777888********************99********************************999..99999******* PP

        PhoD 190 artlLGeeQeqwLkaeLkasrar...WkvlaqqvlmskvdldaelaegalpvnlDawdGypaeRerlletikeakirnvVvLtGDvHaawandl..... 280
                 +r+l+G++Qe+w++++L++s+ r   W+v+++q+++s++      ++++++ n DawdGy a+R+r+l+++ ++ki n+ +L+GD+H++w++dl     
  CCE26735.1 389 SRSLMGARQENWFYRTLSRSKRRgaiWRVIGNQIMFSRIF-----QDDHWTTNGDAWDGYVANRNRTLKHLYDNKIDNNLFLAGDTHQNWVSDLawlgt 482
                 ***************************************9.....344456788****************************************88765 PP

        PhoD 281 d.ykdpdg.eavgvEfvtgsvssgglgeylaeaadateeallaanpelkytelderGyveldlteeavtadl 350
                 + y++++g +a+gvE+ +++ ss+g +   +  a +++++++++n+el ++e ++rGy++l++t+e+ ta++
  CCE26735.1 483 KpYDQASGnGAIGVELGGTATSSTGQKGPIEPVAGDAARGMIRRNEELAWQEGYYRGYFHLTVTAEKSTAKY 554
                 2688777789*************9999888867788888889*************************99976 PP

>> PhoD_N  PhoD-like phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.1   6.5e-30   3.9e-26       1      90 []      66     189 ..      66     189 .. 0.92

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 6.5e-30
      PhoD_N   1 hGVasGDptadsvilWTRvapesee..........................rpvrvevevaedeaf.....kkvvrkgtalatseldytvkvevtgLkp 68 
                 hGVasGDp ++ +ilWTRvap++e+                          +p++ve++v e ++      ++ v+ g+a++ts++dytvkve+++L+p
  CCE26735.1  66 HGVASGDPWPETIILWTRVAPTNESdssevpvegtvplwshetdrfakadpNPICVEWKVFEIDDDdddetRRPVTCGRAYTTSDVDYTVKVEAKELRP 164
                 9**********************99***********************************975443344449*************************** PP

      PhoD_N  69 gqeyfYrfr...agsesspvGrtrT 90 
                  ++y Y+f+   ++s++sp+Grt T
  CCE26735.1 165 LTKYSYQFNvcgSDSVKSPMGRTMT 189
                 **********65556********87 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.6e-06     0.016      38      89 ..     133     184 ..      81     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.6e-06
  Pur_ac_phosph_N  38 dalestaeatsstyettnyksgyshkatltgLepgttYyYrv...gddeggwSev 89 
                      d+++++     ++y  t+++  y+ k+++++L+p t+Y+Y++   g+d+   S+ 
       CCE26735.1 133 DDETRRPVTCGRAY--TTSDVDYTVKVEAKELRPLTKYSYQFnvcGSDS-VKSPM 184
                      33333222223333..68999********************86556665.66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4699.99
//
Query:       CCE26736.1  [L=585]
Description: uncharacterized protein CPUR_00205 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-10   38.9   0.0    1.6e-09   38.0   0.0    1.4  1  C2               C2 domain
  ------ inclusion threshold ------
       0.11   12.5   1.0       0.22   11.5   0.2    1.9  2  Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-termin


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   1.7e-13   1.6e-09       7      92 ..      77     173 ..      71     179 .. 0.89

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 1.7e-13
                 EEEEESSSSSST.TSSCEEEEEEEE..........ECEEEEEE-SCSSSSSSEEEEEEEE.EESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHH CS
          C2   7 vieAknLpnkdk.kgssdpyvkvsl..........dgkqkakTrviknslnPvWnekftf.evaeleeakLeveVfdndrlskddfiGkveiplstll 92 
                  + A nLp+ d  + ssdp+ +++l          + + +++T++ +++++P+Wne+  + +v+  +  +L+ +++d+d+  kdd +G+v++++ +l 
  CCE26736.1  77 FKYAANLPPGDLtTVSSDPFLTATLkasnpkrhkeEPDLVHRTQTQRRTTDPEWNEDWIVaNVPA-SGFTLKCRLYDEDSPDKDDRLGNVTVKVPQLF 173
                 56799****9997788***************999989999****999999******999967777.**************************998854 PP

>> Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   2.5e-05      0.22      21      62 ..     499     540 ..     499     543 .. 0.91
   2 ?   -2.9   0.0      0.75   6.7e+03       8      18 ..     569     579 ..     563     582 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
                      CCCCCTTTTCCCCTTTHHHHCCHHHHCCCCCCCCCHHHCCHC CS
  Phe_tRNA-synt_N  21 tellkelgklppeeRkeaGkliNelKqeieealeerkeelea 62 
                      te lke+++ + + +k  G+++N + ++  +++++++++l a
       CCE26736.1 499 TERLKEMKQAQHDTKKNEGRMVNVVMNRSASSISSAESRLDA 540
                      5679*************************9999999998876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.75
                      CCHHHHHCCCC CS
  Phe_tRNA-synt_N   8 elRvkyLGkkG 18 
                      +++ +  GkkG
       CCE26736.1 569 AIKGALPGKKG 579
                      33334445665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4077.82
//
Query:       CCE26737.1  [L=231]
Description: uncharacterized protein CPUR_00206 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-11   41.9   0.4    1.7e-10   41.1   0.4    1.4  1  4HBT         Thioesterase superfamily
    2.1e-05   24.0   0.0    2.5e-05   23.7   0.0    1.1  1  Acyl-ACP_TE  Acyl-ACP thioesterase
     0.0033   17.6   0.0     0.0056   16.8   0.0    1.3  1  DUF4442      Domain of unknown function (DUF4442)


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.4   2.9e-14   1.7e-10       2      77 ..     134     216 ..     133     218 .. 0.92

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 2.9e-14
                 SSB-HHHHHHHHHHHHHHHHHHTTST.......TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCE CS
        4HBT   2 GvvhgGvylallDeaagaalrslggr.......gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrl 77 
                 G +hgG +++++Dea+g +              ++  v++ ++i+flrpvr++ +++v a+ +   ++   +++evrd++g++
  CCE26737.1 134 GLLHGGMTATMMDEAMGTVNEINTALgkeglvyQRSSVTAGMEIQFLRPVRVPGVVCVAAWREGGEGRKTRMRCEVRDGEGEV 216
                 99***************987655555668***************************************************987 PP

>> Acyl-ACP_TE  Acyl-ACP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   4.2e-09   2.5e-05      57     115 ..     171     229 ..     141     231 .] 0.89

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 4.2e-09
  Acyl-ACP_TE  57 vvakyeieierlpefgdkveietwaesenklfcyrdfkvrdekgekiieaksvfvlmdq 115
                  v+a +ei+  r++++  +v ++ w e+ + + ++++ +vrd +ge++++  s++v m +
   CCE26737.1 171 VTAGMEIQFLRPVRVPGVVCVAAWREGGEGRKTRMRCEVRDGEGEVLVRGRSTWVAMKE 229
                  8999****************************************************976 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   9.4e-07    0.0056      48     131 ..     136     225 ..     128     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.4e-07
                 B-HHHHHHHHHHHHHHHHHHHS-T.......TEEEEEEEEEEEE-S---.S-EEEEEE-TTS-TT--EEEEEEEEEEETTE.EEEEEEEEEE CS
     DUF4442  48 vHAiAicnlaElamGllaeatlpd.......thrwipkgmevdYlakat.gdltavaelepedvgekeelvvevevrdekgeevvraeitlw 131
                 +H++  +++++ amG++ e ++         ++  +  gme+++l++ +  ++ +va   +   ge+++ ++++evrd +ge+ vr++ t++
  CCE26737.1 136 LHGGMTATMMDEAMGTVNEINTALgkeglvyQRSSVTAGMEIQFLRPVRvPGVVCVAAWREG--GEGRKTRMRCEVRDGEGEVLVRGRSTWV 225
                 69999999*********8877654335555455567789********7626899**998765..5567788899*******999****9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1836.45
//
Query:       CCE26738.1  [L=335]
Description: uncharacterized protein CPUR_00207 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1160  (0.0646996); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2245.46
//
Query:       CCE26739.1  [L=131]
Description: uncharacterized protein CPUR_00208 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1031.67
//
Query:       CCE26740.1  [L=265]
Description: uncharacterized protein CPUR_00209 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-24   86.9   0.3      2e-24   86.5   0.3    1.1  1  NAD_binding_10  NAD(P)H-binding
    0.00045   19.8   0.0    0.00058   19.4   0.0    1.2  1  Epimerase       NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.041   13.0   0.0      0.057   12.5   0.0    1.3  1  RmlD_sub_bind   RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.3   3.3e-28     2e-24       1     182 [.      11     223 ..      11     225 .. 0.77

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 3.3e-28
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH...CT..TTCEEEE...--TT-CCHHHHHHTT-..SEEEES---TCC.........HHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele...ae..eglevve...gdvtdvedlaealkga..daVvsalggggk.........dee 76 
                     G++Gkv++ll+  ll+r+ ++vt ++R+pe++++++   ++   +l+v++   gdv+++e+ a+ lk+   d V +a+g+ggk         d++
      CCE26740.1  11 GGHGKVAQLLTPLLLKRS-WSVTSIIRTPEQAPAVSklgENlpGKLRVLVcsvGDVSTQEQAAAILKDLkpDFVAWAAGAGGKggpeatykvDRD 104
                     9****************6.*************96553332232455555422478888899999999764489*****99888889888888888 PP

                     HHHHHHHHHHH.CT--EEEEEEETTTTS..GCGCHHHHH.......HHHCCHHHHHHHHHHHHHHHH.....SSSEEEEEEE-CEE-ST--SEEE CS
  NAD_binding_10  77 gaknivdaake.agvkRfvlvsaigvgd..evpgefgew.......nkellkaylaakraaeellra.....sgldwTivrpggLtdepttkyrv 156
                     +a++ + aa     + Rf+l+s+ g+++   ++ + gew       n+++l++y++ak aa+e l +     s l    +rpg Lt+ep++++++
      CCE26740.1 105 AAIKFIHAAASvPSITRFLLISYSGSRRagAAWWPSGEWdeynqsvNHNVLATYYQAKIAADEALYEaskksSTLVGIDLRPGVLTEEPAGRVEL 199
                     89999998888357************973323333444422221115679*************99666666678888889***********9999 PP

                     EETTSS----EEEHHHHHHHHHHHCT CS
  NAD_binding_10 157 vekgepfkggsisradVAdvlvavld 182
                     ++  +++ +g++sra VA+++ a+l+
      CCE26740.1 200 GK--TKHVKGNVSRATVAAAADALLA 223
                     86..4556789*******99887776 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   9.8e-08   0.00058       1     160 [.       7     176 ..       7     212 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 9.8e-08
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiek 90 
                 +l++G++G + + l+  ll++ + v+ + r +++ +  ++                +d+  +++ ++++k+ +pd v  +A+ gg +     p+++++ 
  CCE26740.1   7 VLLIGGHGKVAQLLTPLLLKRSWSVTSIIRTPEQAPAVSKLGEnlpgklrvlVCSVGDVSTQEQAAAILKDLKPDFVAWAAGAGGKGG----PEATYKV 101
                 689*******************99999999977766554443378****99988899***********************99999987....9999999 PP

                 HTHHHHHHHHHHHHH.TCTEEEEEEEGGGGTSCSS.SSBSTCSTTS--...--SSHHHHHHHHHHHHHHHHHHHH CS
   Epimerase  91 nlqgtlnlleaarka.gvkrllflsSsevYGkdae.qpkeettltgpl...kpnspYaaaKlageklveayaaqy 160
                 +   + + ++aa     + r+l +s s    ++a   p  e  ++ +    +    Y  aK+a+++ + ++ ++ 
  CCE26740.1 102 DRDAAIKFIHAAASVpSITRFLLISYSGSRRAGAAwWPSGEWDEYNQSvnhNVLATYYQAKIAADEALYEASKKS 176
                 999999****99988666788777654444444442264444444433355788899999999999998887766 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.5e-06     0.057       2      88 ..       6     112 ..       5     180 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.5e-06
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT........................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre........................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeea 73 
                    ++l++G++G++++ L+ +l ++ ++v+++ r+                          d++ +e++a++lk+ kpd+v  aA           +ea
     CCE26740.1   6 HVLLIGGHGKVAQLLTPLLLKRSWSVTSIIRTpeqapavsklgenlpgklrvlvcsVGDVSTQEQAAAILKDLKPDFVAWAAGA----GGKGGPEA 97 
                    689**************************99999*********************999******************99666543....33344444 PP

                    HHHHHTHHHHHHHHH CS
  RmlD_sub_bind  74 ayavnaeavealAea 88 
                     y+v+ +a+ +  +a
     CCE26740.1  98 TYKVDRDAAIKFIHA 112
                    444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2039.55
//
Query:       CCE26741.1  [L=743]
Description: uncharacterized protein CPUR_00210 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-11   43.2   0.0    2.6e-10   39.4   0.0    2.0  2  FMO-like       Flavin-binding monooxygenase-like
    1.1e-10   41.2   0.0    7.6e-10   38.5   0.0    2.0  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    7.7e-10   39.0   0.3    3.5e-08   33.6   0.1    3.2  3  NAD_binding_9  FAD-NAD(P)-binding
    2.4e-08   34.1   0.4      2e-07   31.2   0.0    2.6  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    5.9e-07   29.0   0.1     0.0028   16.9   0.0    3.0  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.1e-06   28.1   0.3      2e-05   23.9   0.1    2.6  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
     0.0002   21.1   0.2      0.015   14.9   0.1    2.8  3  DAO            FAD dependent oxidoreductase
     0.0016   19.0   0.0        4.5    7.9   0.0    2.8  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0018   17.6   0.1     0.0018   17.6   0.1    1.5  2  Thi4           Thi4 family
      0.007   15.7   0.2      0.013   14.7   0.2    1.4  1  FAD_binding_3  FAD binding domain
      0.009   15.3   0.0      0.025   13.9   0.0    1.8  2  Amino_oxidase  Flavin containing amine oxidoreductase
  ------ inclusion threshold ------
      0.024   13.4   0.1      0.043   12.5   0.1    1.4  1  HI0933_like    HI0933-like protein
       0.12   11.7   1.6       0.13   11.5   0.0    1.8  2  FAD_oxidored   FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   1.9e-13   2.6e-10       3     202 ..       4     211 ..       2     221 .. 0.79
   2 ?    1.7   0.0      0.05        69     289     331 ..     336     379 ..     305     421 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 1.9e-13
    FMO-like   3 kvaviGaGvsGlasikcclee....gleptcfersddiGGlwrfkenveeGrasiyksvv.snsskemscfsdfplpedypnflhnsklleylklfake 96 
                  v ++GaG +Gl++ k+ l++     +e   fe    +GGlw    ++ +  a++   ++ +n s+  + fsd   +e    f +  ++  yl+++ ++
  CCE26741.1   4 SVCIVGAGPAGLVAAKTLLQNapagAFEVSVFESQPSLGGLWPS--SPSDA-ARLVNPLMgANQSRHTMHFSDLAWEEGAAQFPRAWQIGRYLEAYEER 99 
                 699****************973333589**************74..44554.5555555438**********************************876 PP

    FMO-like  97 fdllkyiqfktt..vcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgk......rvl 187
                 + l  +  f+       v+ r d+s+s  w+v  e  g +e+  f  ++v +G++  p +p             ++hs +y++ e + g        +l
  CCE26741.1 100 Y-LRSHPGFRLRcgTRVVETRRDVSASFTWHVRVECGGEQETRQFTHLIVASGYFGRPVVPEG-ISLAPTAPIPVIHSSQYRDLESLLGTeasakgTIL 196
                 5.777877765511567999*****************************************64.33334455678999999987766543111112588 PP

    FMO-like 188 viGlGnsggdiavel 202
                 v+G   sg ++a  +
  CCE26741.1 197 VVGGQMSGVEVAGAI 211
                 888777877777655 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.05
    FMO-like 289 arilaGavkvks.svkeltetsaifedgtveedidvvifatGyt 331
                 + +  G +++ + +   l+ ++a + dg + e+i +v++atG+ 
  CCE26741.1 336 EFVRSGLISLSTgRFSTLRGNTAELTDGRRIENIVAVVLATGFD 379
                 555667777654267888999999******************95 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   5.5e-13   7.6e-10       2     163 ..       4     213 ..       3     238 .. 0.63
   2 ?    0.1   0.0      0.27   3.8e+02     218     243 ..     358     384 ..     331     400 .. 0.73

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 5.5e-13
                  SEEEE--SHHHHHHHHHHHH....HTS-EEEEE.............TTHCHHHCSHHHHCHHHHHHHHHHHHH......................... CS
                  xxxxxxxxxxxxxxxxxxxx....xxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxx......................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq....agakvtlve.............legtclnggcllskallgvaedaeias......................... 57 
                  +v+++G+GpAGl aa+tl q      ++v ++e             +                +++     +                          
   CCE26741.1   4 SVCIVGAGPAGLVAAKTLLQnapaGAFEVSVFEsqpslgglwpsspS---------------DAARLVNPLMGanqsrhtmhfsdlaweegaaqfpra 86 
                  79******************877558999999544443333333321...............222222222222234444456666677777888877 PP

                  ...........HHHHCHHHHCCCCHCCT.CEEEEESCEEEEETEEEC............TCEEEEEESEEEE---..EEE-BC.TCTTC.TTBEECCS CS
                  ...........xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxx..xxxxxx.xxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ...........evvkklnqgielllgee.vvkidpgkkkvklekkke............gdeekiaydklvlAtG..ssprdl.gipGvaenvgklvr 128
                             e          ++l+++ ++++  g + v+ + +++            g++e+ ++ +l++A+G  ++p  + gi   a+++   v 
   CCE26741.1  87 wqigryleayeE----------RYLRSHpGFRLRCGTRVVETRRDVSasftwhvrvecgGEQETRQFTHLIVASGyfGRPVVPeGISL-APTAPIPVI 173
                  766546655542..........33333335555555555555444445566666667999***************5447777754443.344433333 PP

                  ECHHHHHHCCSS-T.....SEEEEES-SHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 129 tldsaealklkllp.....krivvvGgGyiGvElAaalak 163
                  ++ + + l++ l         i+vvGg + GvE+A+a+a 
   CCE26741.1 174 HSSQYRDLESLLGTeasakGTILVVGGQMSGVEVAGAIAT 213
                  333333333333335557779***************9654 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.27
                  EEETTSCE.EEESEEEE-S-EEES-HH CS
                  xxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 218 vvledgee.idadlvvvavGvrpstel 243
                   +l+dg++ ++   vv+a+G+ ps+++
   CCE26741.1 358 AELTDGRRiENIVAVVLATGFDPSPSI 384
                  456666664556677777777777654 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   2.6e-11   3.5e-08       1     155 [.       6     152 ..       6     153 .. 0.74
   2 ?    0.9   0.0      0.29     4e+02     133     154 ..     355     377 ..     335     379 .. 0.81
   3 ?   -0.8   0.0      0.99   1.4e+03      81      97 ..     542     562 ..     529     568 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 2.6e-11
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddp.ptfaeWlrergaleeaeeldpddfvpRal 95 
                    +ivGaGp+Gl +++ Ll++a ++  +e+ +f+ +++  g+ w ++ s++    ++   m + + +   +f + + e+g           +f++   
     CCE26741.1   6 CIVGAGPAGLVAAKTLLQNA-PAGAFEVSVFESQPSL-GGLWPSSPSDA--ARLVNPLMGANQSRHtMHFSDLAWEEG---------AAQFPRAWQ 88 
                    59*****************8.9**************8.89998886554..344455555554433389999888887.........478999999 PP

  NAD_binding_9  96 yGrYlrdlfeellarlpegvtvevhraevvdleeradgq..avll...adgaslaadaVvLAlGh 155
                    +GrYl+++ e+ l++ p g+++++ +  v+  ++  +++  +v+     ++++ ++ ++++A G 
     CCE26741.1  89 IGRYLEAYEERYLRSHP-GFRLRCGTRVVETRRDVSASFtwHVRVecgGEQETRQFTHLIVASGY 152
                    *************9886.79999766555555555565422344422223345688888888885 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.29
  NAD_binding_9 133 gqavlladgasl.aadaVvLAlG 154
                    g +  l+dg+++  + aVvLA+G
     CCE26741.1 355 GNTAELTDGRRIeNIVAVVLATG 377
                    45677899988779********9 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.99
  NAD_binding_9  81 e....aeeldpddfvpRalyG 97 
                         +++l+  +fvpRa++ 
     CCE26741.1 542 AhqmiIHGLTTPRFVPRAVFR 562
                    1345789999********996 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.4e-10     2e-07       1      41 [.       7      51 ..       7      74 .. 0.82
   2 ?   -2.4   0.0       4.3   5.9e+03      40      54 ..     100     118 ..      85     127 .. 0.65
   3 ?   -1.0   0.1       1.6   2.2e+03       1      13 [.     197     209 ..     197     226 .. 0.70

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.4e-10
                   EE--SHHHHHHHHHHHCC....TEEEEEE-SSSSSSGGG-EECET CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka....gfdvlllekrdrlGGraasyevp 41
                   IvGaG +GlvaA +L ++     f+v ++e++++lGG + s   +
     CCE26741.1  7 IVGAGPAGLVAAKTLLQNapagAFEVSVFESQPSLGGLWPSSPSD 51
                   9***********998875577666*************99987665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.3
                    E....TTCEECTS---EEE CS
  NAD_binding_8  40 v....pgvrvdygahifhg 54 
                    +    pg+r+ +g +++ +
     CCE26741.1 100 YlrshPGFRLRCGTRVVET 118
                    3444477888888777665 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.6
                    EE--SHHHHHHHH CS
  NAD_binding_8   1 IvGaGlsGlvaAy 13 
                    +vG+ +sG   A 
     CCE26741.1 197 VVGGQMSGVEVAG 209
                    7888888875554 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0023       3.2       2      18 ..       7      23 ..       6      41 .. 0.86
   2 !   16.9   0.0     2e-06    0.0028     120     201 ..     138     229 ..     120     243 .. 0.74
   3 ?    1.2   0.0      0.13   1.8e+02     249     271 ..     360     382 ..     352     402 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0023
  Pyr_redox_3  2 IiGaGPaGlaaaielkk 18
                 I+GaGPaGl aa +l +
   CCE26741.1  7 IVGAGPAGLVAAKTLLQ 23
                 9*********9987754 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 2e-06
  Pyr_redox_3 120 ketyeAkkviiAtGefdkPnkln.ipGeek...lvkhyskvkefhky......agqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiek 201
                  +et + +++i+A G+f++P +++ i+ +      v+h+s++++++ +      a+  ++V+Gg+ S+v++A  ++ + ++ t   +gs+i++
   CCE26741.1 138 QETRQFTHLIVASGYFGRPVVPEgISLAPTapiPVIHSSQYRDLESLlgteasAKGTILVVGGQMSGVEVAGAIATRLSSATHSPDGSPIKD 229
                  56777899************9864665554333578*****99876522221156779*************998888777777666666665 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.13
  Pyr_redox_3 249 tedgkkvevkddvvlatGykpdl 271
                   +dg+++e+   vvlatG++p+ 
   CCE26741.1 360 LTDGRRIENIVAVVLATGFDPSP 382
                  678999999999*******9974 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   1.4e-08     2e-05     114     214 ..     110     215 ..       2     222 .. 0.83
   2 ?   -2.4   0.0       1.4   1.9e+03     324     341 ..     362     379 ..     357     380 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.4e-08
  K_oxygenase 114 rfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvG..tepkiPevlekle.gkervvHsseylerkee....llakkriaVvGsGqSaa 204
                  r g++v e + d ++ ++ ++v++ +  ge+e+++  +l+++ G  ++p +Pe +         v+Hss+y   ++       ak +i+VvG+  S+ 
   CCE26741.1 110 RCGTRVVETRRDVSA-SFTWHVRV-ECGGEQETRQFTHLIVASGyfGRPVVPEGISLAPtAPIPVIHSSQYRDLESLlgteASAKGTILVVGGQMSGV 205
                  556666666666654.35555665.4789999************999******987555234689******999877888789999************ PP

  K_oxygenase 205 eifedllrrq 214
                  e++  +++r 
   CCE26741.1 206 EVAGAIATRL 215
                  **99888874 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
  K_oxygenase 324 geeetlevdavvlATGYr 341
                  + ++ +++ avvlATG++
   CCE26741.1 362 DGRRIENIVAVVLATGFD 379
                  5567778889******96 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.1e-05     0.015       2      90 ..       5     117 ..       4     121 .. 0.71
   2 ?    4.8   0.0     0.013        18     133     206 ..      79     157 ..      71     177 .. 0.69
   3 ?   -0.7   0.0      0.58     8e+02     184     207 ..     359     384 ..     291     451 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
                 EEEECTSHHHHHHHHHHHHT...T...EEEEESSSSTT..S.SGGGSSEEEEESSSSTHHSTH.............HHHHHHHHHHHHHHHHHHHHSS. CS
         DAO   2 vviiGGGiiGlstAyeLarr...g...Vtllekgdiag..s.gaSgrnsgllhsglrylpeas.............elarlslealeelreleeelgi. 77 
                 v+i+G+G +Gl +A  L +    g   V ++e+++ +g  +  + + +++l+ + +   ++ +             ++++ + +  ++l+++ee++   
  CCE26741.1   5 VCIVGAGPAGLVAAKTLLQNapaGafeVSVFESQPSLGglWpSSPSDAARLVNPLMGANQSRHtmhfsdlaweegaAQFPRAWQIGRYLEAYEERYLRs 103
                 9****************87654459***********99995599999*****99883333333555667777777755566777767777777765331 PP

                 TTSEEE.EEEEEEE CS
         DAO  78 didyrr.tGllsla 90 
                 + ++r  +G+ +++
  CCE26741.1 104 HPGFRLrCGTRVVE 117
                 46655447776665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.013
                 EEEEETTEEEEEHHHHHHHHHHH.HHHT.T-EEEESECEEEEEEEE...TCEEEEEEECT.EEE..EEEEEEEE--GGGHH.H CS
         DAO 133 galfypdtgqvdpakltaalara.aeal.Gveilegtevtgleeed...gkvwgverttp.gen..daadavVnaaGawsd.l 206
                 ga  +p  ++ +  +++ a+ ++ ++++ G +++ gt+v++ ++ d      w+v r++  ge+  ++++++++a G + +  
  CCE26741.1  79 GAAQFPR-AW-QIGRYLEAYEERyLRSHpGFRLRCGTRVVETRR-DvsaSFTWHV-RVECgGEQetRQFTHLIVASGYFGRpV 157
                 6677777.44.47888999998855555678**********966.3356777888.666667663224455******986643 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.58
                 EECTEEE.EEEEEEEE--GGGHH.HH CS
         DAO 184 rttpgen.daadavVnaaGawsd.ll 207
                 + t+g++ + + avV+a+G   +  +
  CCE26741.1 359 ELTDGRRiENIVAVVLATGFDPSpSI 384
                 33445554456779999997654333 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0033       4.5       1      44 [.       4      54 ..       4      64 .. 0.76
   2 ?   -2.7   0.0       6.4   8.9e+03      42      69 ..      93     121 ..      88     127 .. 0.76
   3 !    7.7   0.2    0.0037       5.1       2      20 ..     195     213 ..     194     220 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0033
                EEEEECSSHHHHHHHHHH...HHTTS.EEEEEESSSSSS...TTSSHHHHH CS
   Pyr_redox  1 kvvvvGgGyiglElAgal...aelgk.kVtvversdkll...rllDeeask 44
                +v +vG+G  gl +A++l   a  g+ +V+v+e ++ l    +  + +a++
  CCE26741.1  4 SVCIVGAGPAGLVAAKTLlqnAPAGAfEVSVFESQPSLGglwPSSPSDAAR 54
                588***************5543344359*****999998556666666655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.4
                 HHHHHHHHHHHT.TEEEECSEEEEEEEEE CS
   Pyr_redox  42 askilqeklekn.gievllntkveeiegs 69 
                 ++++ +++l+ + g +++ +t+v+e + +
  CCE26741.1  93 LEAYEERYLRSHpGFRLRCGTRVVETRRD 121
                 55666789999999999999999998765 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0037
                 EEEECSSHHHHHHHHHHHH CS
   Pyr_redox   2 vvvvGgGyiglElAgalae 20 
                 ++vvGg  +g+E+Aga+a 
  CCE26741.1 195 ILVVGGQMSGVEVAGAIAT 213
                 89*************9854 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.3e-06    0.0018      19      55 ..       4      43 ..       1      47 [. 0.87
   2 ?   -4.5   0.5         7   9.6e+03      19      38 ..     194     213 ..     191     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.3e-06
                EEEEE--SHHHHHHHHHHHHC.T..TS-EEEEESSSS--T CS
        Thi4 19 DvvivGaGssGLtaayylakk.p..dlkvailersvspGG 55
                 v ivGaG++GL aa++l ++ p   ++v ++e++ s+GG
  CCE26741.1  4 SVCIVGAGPAGLVAAKTLLQNaPagAFEVSVFESQPSLGG 43
                589**************9998864469**********987 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 7
                 EEEEE--SHHHHHHHHHHHH CS
        Thi4  19 DvvivGaGssGLtaayylak 38 
                  +++vG+  sG+  a  +a+
  CCE26741.1 194 TILVVGGQMSGVEVAGAIAT 213
                 58899999999999998886 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   9.8e-06     0.013       3      22 ..       4      23 ..       3      25 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.8e-06
                   EEEEE--SHHHHHHHHHHHH CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLse 22
                   +V+IVGaGpaGl++a+ L +
     CCE26741.1  4 SVCIVGAGPAGLVAAKTLLQ 23
                   69*************99865 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.8e-05     0.025       2      30 ..      13      45 ..      12      85 .. 0.87
   2 ?   -2.5   0.0       1.7   2.4e+03     220     260 ..     104     150 ..      88     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
                   HHHHHHHHHHHTT....EEEEEEESSSSSBTTS CS
  Amino_oxidase  2 aGLaaArqLlsaG....fdVtvlEardrvGGRi 30
                   aGL+aA++Ll++     f+V+v+E+++ +GG  
     CCE26741.1 13 AGLVAAKTLLQNApagaFEVSVFESQPSLGGLW 45
                   9********8876677***************65 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.7
                    TTTEEEETSEEEEEEEE..ETTC.....EEEEETTSTEE.EESEEEE-S CS
  Amino_oxidase 220 lrgldirlntrVkeikr..egdg.....vtvtledgevv.eaDaVvvTv 260
                     +g ++r +trV e +r  +        v+v++   +++ ++ + +v++
     CCE26741.1 104 HPGFRLRCGTRVVETRRdvS--AsftwhVRVECGGEQETrQFTHLIVAS 150
                    678899999********552..444799999998777668999999996 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.1e-05     0.043       2      36 ..       4      42 ..       3      43 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.1e-05
                 SEEEE--SHHHHHHHHHH....HHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisa....akrgkrVlllekakklg 36
                 +v ++G+G+AGl aA ++     +   +V ++e++++lg
   CCE26741.1  4 SVCIVGAGPAGLVAAKTLlqnaPAGAFEVSVFESQPSLG 42
                 689************998443123346899999988876 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.7e-05      0.13       2      40 ..       5      47 ..       4     107 .. 0.79
   2 ?   -3.0   1.2       2.6   3.6e+03       2      15 ..     195     208 ..     195     215 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.7e-05
  FAD_oxidored  2 vvVvGGgpaGvaAA...iaAaraGa.kvlLveergvlGGllts 40
                  v++vG+gpaG++AA   ++ a aGa +v + e ++ lGGl  s
    CCE26741.1  5 VCIVGAGPAGLVAAktlLQNAPAGAfEVSVFESQPSLGGLWPS 47
                  99************6666778889889************9743 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.6
  FAD_oxidored   2 vvVvGGgpaGvaAA 15 
                   ++VvGG ++Gv  A
    CCE26741.1 195 ILVVGGQMSGVEVA 208
                   79********8544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 5140.69
//
Query:       CCE26742.1  [L=353]
Description: related to D-lactate dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-57  191.4   0.0    1.1e-56  191.0   0.0    1.2  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      7e-26   90.5   0.0    8.2e-26   90.3   0.0    1.1  1  2-Hacid_dh      D-isomer specific 2-hydroxyacid dehydrogenase
    2.1e-05   24.7   0.0    6.9e-05   23.1   0.0    1.8  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    6.7e-05   22.5   0.0     0.0012   18.4   0.0    2.2  2  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
    0.00019   21.6   0.1    0.00036   20.6   0.1    1.4  1  AdoHcyase_NAD   S-adenosyl-L-homocysteine hydrolase, NAD bind
    0.00048   19.5   0.1    0.00096   18.5   0.1    1.6  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    0.00084   19.8   0.0      0.021   15.3   0.0    2.2  2  CoA_binding_2   CoA binding domain
  ------ inclusion threshold ------
       0.02   13.6   0.0      0.029   13.1   0.0    1.2  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
       0.14   11.7   0.1       0.24   10.9   0.1    1.4  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.0   0.0   5.5e-60   1.1e-56       2     178 .]     118     306 ..     117     306 .. 0.94

  Alignments for each domain:
  == domain 1  score: 191.0 bits;  conditional E-value: 5.5e-60
                   HHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE- CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslh 98 
                   al+  l+r++++a+++vreg++ + + llg++l+gktvGi+G+G+IG a+a+++++fg++v+++d+++ +e  ee+ g +++sleell+esDi+slh
    CCE26742.1 118 ALIQTLNRNTHRAYNRVREGNF-ALDGLLGRTLHGKTVGIVGTGNIGLATARIMRGFGCRVLGFDPYPAREVLEEDIGGKYASLEELLSESDIISLH 213
                   78889*****************.999*******************************************9999999999****************** PP

                   S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSS..........SSGTCH...HHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  99 lpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeee..........plpeds...pllelpnviltPHia 178
                   +plt++trh++na ++ +mk+g++l+Nt+RGgl+d+ea++ aLksg+i+g alDv+e e          ++ +d+   +l++++nv+++ H a
    CCE26742.1 214 CPLTDSTRHIVNAGTIGAMKRGVVLVNTSRGGLIDTEAVIHALKSGQIGGLALDVYEGEgalfyddhsgEVIQDDilmRLTTFHNVLVSGHQA 306
                   ************************************************************9999999995555542337799*******9987 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.0   4.1e-29   8.2e-26      17     132 ..      20     336 ..       5     338 .. 0.95

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 4.1e-29
                 H........TTE.EEEEESCSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHH..TT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH.. CS
                 x........xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  2-Hacid_dh  17 e........egv.evevkdellteellekakdadalivrsntkvtaevleal..pkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt.. 102
                 +         ++ ++ +++ +lt++++  a++ada++v++n+ +   v+ +l    ++ i ++++G++nv l++a+++G++V+nvp+ys+e+vAE++  
  CCE26742.1  20 AaqaahgppPSLlHLIFHEVSLTDDTAPLAQGADAVCVFVNDSLPPTVITKLasLHVQAILLRCAGYNNVHLETAEQHGLAVANVPSYSPEAVAEFAva 118
                 445555555445578999999*******************************8889999**************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  CCE26742.1 119 liqtlnrnthraynrvregnfaldgllgrtlhgktvgivgtgniglatarimrgfgcrvlgfdpyparevleediggkyasleellsesdiislhcplt 217
                 *************************************************************************************************** PP

                 .........................................................................................T-BHHHHHHH CS
                 .........................................................................................xxxxxxxxxx RF
  2-Hacid_dh 103 .........................................................................................aaTeeaqeni 112
                                                                                                          ++T ea+ +i
  CCE26742.1 218 dstrhivnagtigamkrgvvlvntsrgglidteavihalksgqigglaldvyegegalfyddhsgeviqddilmrlttfhnvlvsghqaFFTAEALTEI 316
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHTTCCGTTB CS
                 xxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 113 aeeaaenlvaflkgespana 132
                 ae+++ n  + +++++++n 
  CCE26742.1 317 AECTLRNAQDLARTGTCKNM 336
                 ***************99986 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.6   3.3e+03      42      66 ..      38      62 ..      28     102 .. 0.74
   2 !   23.1   0.0   3.5e-08   6.9e-05       1     109 [.     153     261 ..     153     273 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.6
                   TEEE-SSHHHHHHHCSEEEE-SSSH CS
  NAD_binding_2 42 gakaaesieelvasldvvitmvkag 66
                   +++++++ + l++++d+v ++v+++
     CCE26742.1 38 EVSLTDDTAPLAQGADAVCVFVNDS 62
                   5667778888899999999999875 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 3.5e-08
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---H CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.akaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstssp 94 
                    ++g++G+G++G   a+ +   g++v +++     ++e+++e     ++s+eel+++ d++ +  + ++ ++++++   + a+k+g +l+++s    
     CCE26742.1 153 TVGIVGTGNIGLATARIMRGFGCRVLGFDPY--PAREVLEEDiGGKYASLEELLSESDIISLHCPLTDSTRHIVNAgTIGAMKRGVVLVNTSRGGL 246
                    58***************************66..556666666367899**************************999******************* PP

                    HHHHHHHHHHHHTT- CS
  NAD_binding_2  95 edtrelakelkekgl 109
                     dt+ + ++lk+ ++
     CCE26742.1 247 IDTEAVIHALKSGQI 261
                    *****9999998776 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.08   1.6e+02      56     103 ..      47      93 ..      38     114 .. 0.73
   2 !   18.4   0.0   6.2e-07    0.0012       2      91 ..     149     238 ..     148     253 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.08
                 HHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-EEEESSSHH.HHTTS CS
        IlvN  56 eavkkadvvmiliPDelqkevyeeeiepnlkegkalafahGfn.ihfgl 103
                  +++ ad v++ + D+l  +v+++ +  +l+ +++l    G+n +h ++
  CCE26742.1  47 PLAQGADAVCVFVNDSLPPTVITK-L-ASLHVQAILLRCAGYNnVHLET 93 
                 5688999*********99999954.4.4567777777777775255554 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 6.2e-07
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-..HHHHHHHHHHHTGGG--TT-EE CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliP..Delqkevyeeeiepnlkegkal 91 
                 l+gk++ ++G G+ G a a+ +r  g+ v +g     +     ++ g + ++++e+ +++d++ +  P  D   ++++++     +k+g +l
  CCE26742.1 149 LHGKTVGIVGTGNIGLATARIMRGFGCRV-LGFDPYPAREVLEEDIGGKYASLEELLSESDIISLHCPltD-STRHIVNAGTIGAMKRGVVL 238
                 899************************98.58888888888889999*****************9999423.44556666666667777665 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   1.8e-07   0.00036      21     122 ..     149     257 ..     140     265 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.8e-07
                    -TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCT..T-EE--HHHCTTT-SEEEE....-SSSSSSB-HHHHCCS-TTEEEEE-. CS
  AdoHcyase_NAD  21 laGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaame..Gfevvtleevvkkadivvt....ttGnkdiitlehlkkmkddaivcni. 109
                    l Gk++ ++G G++G  +a+ ++g+G+rv+    dP  a   + e  G + + lee+++++di+      t  ++ i+++ ++ +mk  +++ n  
     CCE26742.1 149 LHGKTVGIVGTGNIGLATARIMRGFGCRVL--GFDPYPAREVLEEdiGGKYASLEELLSESDIISLhcplTDSTRHIVNAGTIGAMKRGVVLVNTs 242
                    68**************************97..57787777766654477999**********99642222567899***************99974 PP

                    ..SSTTTTBTHHHHH CS
  AdoHcyase_NAD 110 ..Ghfdseidvaale 122
                      G  d+e  ++al+
     CCE26742.1 243 rgGLIDTEAVIHALK 257
                    435566666666665 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   4.8e-07   0.00096       9     137 ..     131     249 ..      94     259 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.8e-07
                  CSCGCTSEEETTCEETCB---E.EEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE---BTT.S CS
  AlaDh_PNT_C   9 lekffggkgtlaGgvpgvepak.vlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtvlipG.k 104
                  +++  +g+  l G +  + ++k v ++G G  Gl+ +++ +g+g +V  +D  par    e++g+k         ++l+e ++e+d++  + + p   
   CCE26742.1 131 YNRVREGNFALDGLLGRTLHGKtVGIVGTGNIGLATARIMRGFGCRVLGFDPYPAREVLEEDIGGK--------YASLEELLSESDII--SLHCPLtD 218
                  5666666666666665555666266******************************9988888****........77899999999*86..55666404 PP

                  S---SC-HHHHHTS-TTEEEEETTGGGT-SBTT CS
  AlaDh_PNT_C 105 kaPkLvteemvksMkpgsVivDvAidqGGnvet 137
                  ++ ++v++ ++ +Mk g V+v   +++GG ++t
   CCE26742.1 219 STRHIVNAGTIGAMKRGVVLVN--TSRGGLIDT 249
                  556799***********99985..668888876 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05     0.021      47     106 ..      46     102 ..      22     108 .. 0.87
   2 ?    2.3   0.0      0.11   2.3e+02      38      94 ..     186     252 ..     152     266 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
                    ---T....T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT---HHHHHHHHHTT-EEE CS
  CoA_binding_2  47 aslaedpepvdlvdvftppeatpeivkealalgakavwlqpgsedeeaaelaeeagirvv 106
                    a l    +  d+v+vf++ +  p+++ ++++l+++a+ l  + +++  +e ae++g+ v 
     CCE26742.1  46 APL---AQGADAVCVFVNDSLPPTVITKLASLHVQAILLRCAGYNNVHLETAEQHGLAVA 102
                    333...47889*********************************************9986 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.11
                    SEETTEE...S----T....T--EEEE-S-HHHHGGGHHHHHHH-..-SEEEE-TT.....---HHH CS
  CoA_binding_2  38 eeilgek...vyaslaedpepvdlvdvftppeatpeivkealalg..akavwlqpg.....sedeea 94 
                    +e+l e+   +yasl+e  ++ d++++  p ++   ++  a+++g   ++v+l        +  e++
     CCE26742.1 186 REVLEEDiggKYASLEELLSESDIISLHCPLTDSTRHIVNAGTIGamKRGVVLVNTsrgglIDTEAV 252
                    55555555559999*984699**********999999999999975545555544435565555555 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.4e-05     0.029     195     309 ..      77     188 ..      54     228 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
                     SEEEEESHHCHHHHHHHHHHHH---EEEEE-SSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH..HHHHHHHHHHHHHHTT-EEEEECSSHHHHHH CS
  Oxidored_nitro 195 klnlvlcprsanyaaelleekfgvpyiklvspiGleatdaflrelakllgkevaperiaeer..arlldaladyheylagkrvaiygdpdrvval 287
                     ++ l+ c+ ++n +    +e++g  + + v  +  ea+++f  +l++ l+++     +++ r  + +ld l+     l+gk+v i+g + + +a 
      CCE26742.1  77 QAILLRCAGYNN-VHLETAEQHGLAVAN-VPSYSPEAVAEFAVALIQTLNRNT-HRAYNRVRegNFALDGLLG--RTLHGKTVGIVGTGNIGLAT 166
                     566777777777.788889999******.999******************877.5555554433667788888..79****************** PP

                     HHHHHHHT-EEEEEEESSS-HH CS
  Oxidored_nitro 288 arllkelGmevvaagtetahrd 309
                     ar+++  G++v +   + a++ 
      CCE26742.1 167 ARIMRGFGCRVLGFDPYPAREV 188
                     **********987655555555 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00012      0.24       2      30 ..     153     181 ..     152     190 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                     EEEEE--STTHHHHHHHHHHCTSEEEEE- CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvD 30 
                     ++ ++G+G +Gl ta ++   g  v+g D
      CCE26742.1 153 TVGIVGTGNIGLATARIMRGFGCRVLGFD 181
                     699***********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2495.99
//
Query:       CCE26743.1  [L=626]
Description: uncharacterized protein CPUR_00212 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.008   16.1   0.4      0.018   14.9   0.4    1.5  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4     1e-06     0.018       7      40 ..      51      84 ..      48      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-06
  F-box-like  7 EiLlqIFsyLppsdLlrlalVCrrWrrvaldtpl 40
                E +  IFs L+++d  +++++Cr W  + ld +l
  CCE26743.1 51 ETIQAIFSLLSTEDFNAARHTCRLWLFASLDRRL 84
                77899********************988887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4740.04
//
Query:       CCE26744.1  [L=758]
Description: uncharacterized protein CPUR_00213 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-71  240.3  23.1    3.3e-71  239.8  23.1    1.2  1  RSN1_7TM  Calcium-dependent channel, 7TM region, putative pho
    1.3e-34  120.0   0.0    1.9e-34  119.4   0.0    1.3  1  PHM7_cyt  Cytosolic domain of 10TM putative phosphate transpo
    0.00013   21.7   2.3    0.00019   21.2   0.0    2.5  2  RSN1_TM   Late exocytosis, associated with Golgi transport
  ------ inclusion threshold ------
      0.091   13.5   0.2      0.091   13.5   0.2    3.6  3  YMF19     Plant ATP synthase F0


Domain annotation for each model (and alignments):
>> RSN1_7TM  Calcium-dependent channel, 7TM region, putative phosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.8  23.1   7.4e-75   3.3e-71       2     272 ..     329     602 ..     328     604 .. 0.96

  Alignments for each domain:
  == domain 1  score: 239.8 bits;  conditional E-value: 7.4e-75
    RSN1_7TM   2 klivtlllvlliifwiipvafvgllsnletltkvlpflkkilelskkllsvvtgllPtlllslllallpiilrllsklqGalsrselelsvvskyfaFl 100
                 ++ +tl++++l+++wi+p a+++++ ++ t+ + lp+++++l+ ++ + s+ ++  Ptl++sll++ +p+++ +ls++qG++s++++elsv+sk+f+F+
  CCE26744.1 329 AWSITLFITFLTLIWIFPTAALASFLSICTIDQALPQFAEWLNEHPIVRSFFQNTAPTLVVSLLNVSVPYLYDWLSNHQGMISQGDVELSVISKNFFFT 427
                 6899*********************************************************************************************** PP

    RSN1_7TM 101 vvnvFlvftlagtalsl...leeiidnptsipkllaeslpkasnFfityillqglagaaleLlqlvklilflikrkflsktprdlaerytkppsfdygt 196
                 ++n F+vf ++ t +++   l+++++++  ip l+a+ +++ + F+i++i+lqg++++++++l++++++l+ i r + s+tprd+ e + kpp f+yg 
  CCE26744.1 428 FFNTFFVFAVSKTGFEFwsvLRRFLKDTSLIPMLIAQDVENLARFYISFIILQGVGLMPFKILEIGSVFLSPIYR-WRSTTPRDFDEIQ-KPPIFQYGF 524
                 *************88884445666779*********************************************998.677*******977.********* PP

    RSN1_7TM 197 eypkvllifvialiYsviaP..lilpfaliyfllgylvykyqllyvydtkyesgGklwpralnrllvglvlfqlllig 272
                 ++p+ ll+f ++liYsv+    +il+f++iyf+lgy+++ky+lly++d++++++G +w+++++r++vgl++f+++++g
  CCE26744.1 525 YLPTALLVFNLCLIYSVLVEgwVILIFGIIYFGLGYFTFKYMLLYAMDQPQHATGGAWRIICYRIVVGLLVFEIVMVG 602
                 ******************9989******************************************************98 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.0   4.2e-38   1.9e-34       1     176 []     107     317 ..     107     317 .. 0.95

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 4.2e-38
    PHM7_cyt   1 srTvlvtgiPkelrseeklkeffeelypgkvvesvqivrdvkkldklveerekavrkleaalskykkngkklpkkr....................... 76 
                 +rT+++tgiP + rseeklk+++e l +g v +sv+++rd+k +d+lv+ r+ ++rkle+ ++ y+++ +k+p k+                       
  CCE26744.1 107 DRTFRLTGIPMKHRSEEKLKNLIEGLDIGLV-DSVTLCRDWKYIDELVAHRDTLLRKLEESWAAYLQTRDKTPYKHsdatqtddmddatangqisgetg 204
                 79***************************97.**************************************998888*********************** PP

    PHM7_cyt  77 .........................pthklgflglkligkkvdaidyyrekleeldeeieeerekvkkkplgaaFvtfesersaaavakqakcaaqiqq 150
                                          p+ ++++ +l l ++kvdaidyy+ekl+++de++ e+r+++ + ++++a vt++s  s         c++ iq+
  CCE26744.1 205 degaaenarllasesrqphiyggerPQVTVHYGPLLLRSHKVDAIDYYEEKLRRVDEQVVEARTRE-YATTDMALVTMDSVAS---------CQMVIQA 293
                 *************************9999999999999**************************86.889*********8655.........5556889 PP

    PHM7_cyt 151 ssnptlkpkkwtvelAPePrDviWeN 176
                   +p+  p ++ ++  P P+D++W+N
  CCE26744.1 294 RIDPR--PGRFLTQATPSPSDLVWKN 317
                 99996..8*****************9 PP

>> RSN1_TM  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.2e-08   0.00019      84     153 ..       1      84 [.       1      87 [. 0.65
   2 ?   -2.4   0.8      0.77   3.5e+03      87     105 ..     331     349 ..     324     359 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.2e-08
     RSN1_TM  84 mlikiflvlavlalivLlPvnatggegedskesk............sgldklsisnvsegsn.......rlwahvvvayiftglvlyll 153
                 m+i++f+++a++a+ivL P+na+ +++  +                s +d l+ ++     +       +lw +v ++y+f+gl+l  +
  CCE26744.1   1 MAIRLFTIMAFFAIIVLGPINAKYRKSPWDFVGGdfwssphsphneSFFDALKDKD-----EdksrempFLWSYVAFTYFFVGLTLHSI 84 
                 899******************66444442222223444443333322334444444.....13445788**************998765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.77
     RSN1_TM  87 kiflvlavlalivLlPvna 105
                  i l++++l+li ++P+ a
  CCE26744.1 331 SITLFITFLTLIWIFPTAA 349
                 5777888888888888765 PP

>> YMF19  Plant ATP synthase F0
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2     2e-05     0.091      12      50 ..      65     104 ..      64     128 .. 0.87
   2 ?   -0.2   1.2       0.4   1.8e+03      15      35 ..     425     449 ..     419     469 .. 0.68
   3 ?   -4.7   3.9         4   1.8e+04      14      26 ..     546     558 ..     546     571 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-05
       YMF19  12 ffWlclfFitlYi.vllknilpkiarilklrkkllsslss 50 
                 f+W+ + F ++++ + l++i  +++ri+ lr+k l s+s+
  CCE26744.1  65 FLWSYVAFTYFFVgLTLHSINWETFRIIDLRQKYLGSQST 104
                 9************8788****************9887664 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.4
       YMF19  15 lclfFitlYivll....knilpkia 35 
                 ++ fF t++++++     +++  + 
  CCE26744.1 425 FFTFFNTFFVFAVsktgFEFWSVLR 449
                 4557778888877544434444444 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 4
       YMF19  14 WlclfFitlYivl 26 
                 W++l+F ++Y+ l
  CCE26744.1 546 WVILIFGIIYFGL 558
                 99********933 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5326.02
//
Query:       CCE26745.1  [L=596]
Description: uncharacterized protein CPUR_00214 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-44  152.3  21.9    1.1e-43  149.3   4.8    2.6  3  ThrE             Putative threonine/serine exporter
  ------ inclusion threshold ------
       0.14   11.8   2.7        0.5   10.0   2.7    2.0  1  DUF4131          Domain of unknown function (DUF4131)
        1.6    8.9   7.1        1.9    8.7   1.3    3.0  2  Phage_holin_3_3  LydA holin phage, holin superfamily III


Domain annotation for each model (and alignments):
>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.3   4.8   1.9e-47   1.1e-43       2     240 ..     117     356 ..     116     357 .. 0.92
   2 !   15.6   1.3   1.3e-06    0.0077     102     178 ..     372     452 ..     362     466 .. 0.69
   3 ?   -2.7   1.3      0.52   3.1e+03     185     205 ..     525     546 ..     517     584 .. 0.63

  Alignments for each domain:
  == domain 1  score: 149.3 bits;  conditional E-value: 1.9e-47
        ThrE   2 lilrlGeiLlesGaetyrvedtmkriaralgl.eevevfvtptsiivsvdeeeesittvrrvrsrgvnleklsevnelsreiaageisleeaeerLdeI 99 
                 ++++l+++ +++Ga t+++e++m++ +  l++  e++++++p ++++ ++   + + ++ r  s g++l++ ++v+++  ++a+g++++eea +rLd +
  CCE26745.1 117 YLVQLCRAIITFGALTHQLEEYMSMSSLPLEIeGESNFSYIPDCMTIRFS---HGVVELVR-ASEGIDLGRAQDVHDINMDVAHGRLGVEEAARRLDGV 211
                 689*****************************448999***********4...44555444.7************************************ PP

        ThrE 100 erskpryprwlvvlaaglaaaafallf.ggdwidflvaflagllggllrlll..akrglnsfvleavaaflasllallavslglgln...pdaiiigsi 192
                 + ++++y+ w+ ++++gla+a++a++  gg++id ++af++g+++g+++l++  +  ++  +v+e++aa+++s++a+ ++s++ g +   ++a++++si
  CCE26745.1 212 SGARSKYKVWFLIMMHGLASACVAPFGfGGSLIDTPIAFILGCTVGVMQLVIaaKSERRHAYVFEILAAAITSFMARGFGSINNG-QlfcFSALAQSSI 309
                 **************************88***********************9745567899********************8643.24567******** PP

        ThrE 193 llLvPGlpltnavrDllsgdlvsGlaRlveailialaiafGivlalsl 240
                 ++ +PG+++++++ +l  g  +++++R+v+++ ++l ++ Gi ++++l
  CCE26745.1 310 VMCLPGYVILCGSFELH-GRKNAASSRMVYVVAYILRLGCGIPIGAAL 356
                 ***************85.66799*******************999887 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.3e-06
        ThrE 102 skpryprwlvvlaagl.aaaafallfgg.dwidflvaflagllggllrlll..akrglnsfvleavaaflasllallavsl 178
                 ++p  + w v+++a++ ++ +++ll++  +++++ va++ag++++  +     ++ +++ ++  +++a++++++a+l  +l
  CCE26745.1 372 KPPLSREWCVLFVACFtVCLCIILLAKWrQIPAMTVAAVAGFCVFSYSTEHlpNHLSHFALIPPMLGALTVAIIASLYSRL 452
                 4555556666655544145555555533477888899999988876555442477777888888***********998875 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.52
        ThrE 185 daiiigsillLvP.Glpltnav 205
                 +a ++ ++l+LvP Gl+ t ++
  CCE26745.1 525 AATMLPGLLVLVPaGLAATGSL 546
                 6778888888888566666665 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.7   8.4e-05       0.5       6      63 ..     378     431 ..     373     479 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 8.4e-05
     DUF4131   6 alvllalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqll 63 
                  +++l++++++ +l+++ll     + + + ++ ++++a+++++ ++ ++  n+ls+++
  CCE26745.1 378 EWCVLFVACFTVCLCIILL----AKWRQIPAMTVAAVAGFCVFSYSTEHLPNHLSHFA 431
                 5566666666666666653....56666777777777777777777777788899887 PP

>> Phage_holin_3_3  LydA holin phage, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4     0.037   2.2e+02       3      39 ..     249     285 ..     248     290 .. 0.86
   2 ?    8.7   1.3   0.00032       1.9      33      65 ..     380     413 ..     354     418 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.037
  Phage_holin_3_3   3 iivlAllGGlvsylmrakkgrrrfsikellleivvSg 39 
                      +++l++  G++  ++ ak++rr+  + e+l  +++S 
       CCE26745.1 249 AFILGCTVGVMQLVIAAKSERRHAYVFEILAAAITSF 285
                      5778888899999999999999999999999999985 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00032
  Phage_holin_3_3  33 leivvSgfv.Gllvfllceelglsqlltlaiagl 65 
                      + ++v++f+ +l+  ll+ + ++++ +++a+ag+
       CCE26745.1 380 CVLFVACFTvCLCIILLAKWRQIPAMTVAAVAGF 413
                      6678888862666677777777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4186.15
//
Query:       CCE26746.1  [L=215]
Description: uncharacterized protein CPUR_00215 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1666.22
//
Query:       CCE26747.1  [L=207]
Description: uncharacterized protein CPUR_00216 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.63
# Mc/sec: 986.27
//
Query:       CCE26748.1  [L=116]
Description: uncharacterized protein CPUR_00217 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-08   34.1   0.2    2.9e-08   33.6   0.2    1.3  1  DDE_3         DDE superfamily endonuclease
     0.0088   15.0   0.3     0.0094   14.9   0.3    1.0  1  Peptidase_C6  Helper component proteinase
  ------ inclusion threshold ------
      0.043   13.9   0.4      0.056   13.6   0.4    1.2  1  DUF1940       Domain of unknown function (DUF1940)


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.2   4.9e-12   2.9e-08      81     136 ..       6      59 ..       2      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 4.9e-12
       DDE_3  81 ivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkr 136
                 +++  Dn++i  ++ ++  +ee   + + l +P+y P+lN iE++ws lk++++kr
  CCE26748.1   6 TIFMHDNLPIQMARNVKFCLEE--LGRTSLEWPSYNPDLNHIENFWSCLKKQIFKR 59 
                 56778*****************..88888999**********************94 PP

>> Peptidase_C6  Helper component proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   1.6e-06    0.0094     122     206 ..      21     104 ..       5     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.6e-06
  Peptidase_C6 122 nkvllegkladvseWqeasssLlelarylknretsikkGdisllrnklaaaanwDnqldknavrllgqreeeala.Flkkafdeiq 206
                    k+ le    +  eW  ++  L ++  +   ++++i k d+ + + k + aa  D+ l+kna+ ++ + e + ++  ++  +d++q
    CCE26748.1  21 VKFCLEELGRTSLEWPSYNPDLNHIENFWSCLKKQIFKRDSNMAHMKKSQAAL-DD-LEKNATNVWDELEMTLVNdLVDSVLDRLQ 104
                   4778888888999**********************************999998.87.*********99876654314445555555 PP

>> DUF1940  Domain of unknown function (DUF1940)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   9.4e-06     0.056      70     136 ..      41     106 ..      33     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.4e-06
                 HHHH-------HHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTSTTTTTT--HHHHHHHHHHHHH CS
     DUF1940  70 kLnhadevWlDikekmsnGdrraayllaaaahlekavaylvrmkedeefkeivkdylikyllklsvf 136
                  Lnh ++ W  +k+++ + d   a++ +++a+l++  ++ +++ ++ e+  +v+d + + l +l  +
  CCE26748.1  41 DLNHIENFWSCLKKQIFKRDSNMAHMKKSQAALDDLEKNATNVWDELEM-TLVNDLVDSVLDRLQAV 106
                 69********************************988888887655444.45666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 896.38
//
Query:       CCE26749.1  [L=369]
Description: related to integral membrane protein PTH11 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2973.32
//
Query:       CCE26750.1  [L=110]
Description: uncharacterized protein CPUR_00219 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 825.74
//
Query:       CCE26751.1  [L=642]
Description: uncharacterized protein CPUR_00220 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-06   27.1   0.4    2.5e-05   24.1   0.4    2.4  2  Chromo         Chromo (CHRromatin Organisation MOdifier) doma
  ------ inclusion threshold ------
        1.2    9.4  11.4        4.1    7.6   5.6    2.6  2  UPF0688        UPF0688 family
        3.8    7.5  14.0       0.34   11.0   4.5    3.1  2  Mito_fiss_reg  Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.16   9.5e+02      18      29 ..      84      95 ..      61     120 .. 0.69
   2 !   24.1   0.4   4.1e-09   2.5e-05       1      52 [.     485     538 ..     485     540 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.16
                EEEEEEETTSTG CS
      Chromo 18 leYlVKWkglpy 29
                  Y V W++lp 
  CCE26751.1 84 MTYIVGWRDLPA 95
                468899999885 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 4.1e-09
                 EEEEEEEEEEEETTEEC...EEEEEEETT.STGGGT.EEEEGGGCSSHSHHHHHHHH CS
      Chromo   1 yeVerIidhrtdkdgle...leYlVKWkg.lpysen.tWEpeenlekcfqelideFk 52 
                 +eVer+ d+ +   ++     ++lV+W g +p ++n +WEpe nl    ++l++++ 
  CCE26751.1 485 WEVERLEDMAIYHIENHgliRYFLVRWVGdWPTEQNpSWEPEHNLH---PDLVRNYT 538
                 79********9999888899*************************7...55888886 PP

>> UPF0688  UPF0688 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.3     0.006        36      91     141 ..     163     215 ..     130     244 .. 0.63
   2 ?    7.6   5.6   0.00069       4.1      64     184 ..     360     483 ..     326     485 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.006
     UPF0688  91 elelaedkalppgkeadvsaereeaglplshcravsd..scsaktedslslpk 141
                  +e++ ++ + +g++++v  + +++g++ls++r+ ++  s  +  eds+s++k
  CCE26751.1 163 AIEIESESESESGTGSGVGSHAKSHGMSLSTPRKRRRadSPVSSDEDSNSPTK 215
                 23444455555577777777777777777777766552133333444443333 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00069
     UPF0688  64 selqklvpksdsaalpkvapetpseneelelaedkalppgke...advsaereeaglplshcravsdscsaktedslslpkrsakaaeeessssearee 159
                 s+ ++ +  s +a+lpk++p+++ +++++++ e ++l + ++   a+v++ ++ ++lp++ ++  +++ ++ t++  +  +++++ +e  +++++++  
  CCE26751.1 360 SNSKRTAMDSGTASLPKSPPKKEKKQKVMHSGEGGTLSQKNAsflANVAIDNAIQQLPTRGSSRGRRKQPTSTNQPPAASTHTHRRSELIETRKKTQRT 458
                 566677788899*********************9998885542237888999999*******************9999999998766666666666777 PP

     UPF0688 160 aaleaeeaqkkllqldnSvflDeDS 184
                 + +     q+++  ++ S    +DS
  CCE26751.1 459 TPPPPPSPQMPPPSINPSSHEADDS 483
                 7777777788888888887777777 PP

>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   1.7     0.079   4.7e+02     173     228 ..     311     363 ..     269     376 .. 0.50
   2 ?   11.0   4.5   5.7e-05      0.34     163     210 ..     434     491 ..     405     500 .. 0.53

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.079
  Mito_fiss_reg 173 epssslppppppppppippespsvldssnsaielikqrrgakktsse..esdssksqk 228
                    +p+       p p+pp+   + ++++++n+ i+  ++++++ ++ +   ++++++++k
     CCE26751.1 311 KPLR---IVTPVPLPPLI--TCNSSTTTNNNINTTRESNANIHNINGsiHTRTASNSK 363
                    2211...12232344432..44666666666677776666544433300333344444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 5.7e-05
  Mito_fiss_reg 163 pksssaspsl..epsss...........lp.pppppppppippespsvldssnsaielikqr 210
                    ++++  + +   +               +p ppp p++pp p+  ps+ +++ sa e+++ +
     CCE26751.1 434 QPPAASTHTHrrS---ElietrkktqrtTPpPPPSPQMPP-PSINPSSHEADDSAWEVERLE 491
                    2222111111111...011122233454441344444444.567888899999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4377.82
//
Query:       CCE26752.1  [L=274]
Description: uncharacterized protein CPUR_00221 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-62  208.7   0.0    6.5e-62  208.2   0.0    1.2  1  Pam17     Mitochondrial import protein Pam17


Domain annotation for each model (and alignments):
>> Pam17  Mitochondrial import protein Pam17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.2   0.0   3.6e-66   6.5e-62       6     164 ..     112     270 ..     107     271 .. 0.95

  Alignments for each domain:
  == domain 1  score: 208.2 bits;  conditional E-value: 3.6e-66
       Pam17   6 esssaaakeeekkltwneffklrkkrrrielvasivtallglllgaavlstleidptqqilglDplvvlglatlasgalGwllGpvlgsavfkllnrkk 104
                 + +s aa+e + +l+w++ffklr +rrr++l++s+++++lg  +ga +lst  ++p+ + ++lDp+v lgl+t+a+g+lGwl+Gp++g+++f+l+nr+ 
  CCE26752.1 112 TFHSPAAAELDARLDWDTFFKLRLRRRRLQLFFSLTAGVLGGGAGAVFLSTGLAEPLVMQVPLDPFVSLGLMTMACGGLGWLVGPSIGNQAFYLMNRRL 210
                 556678888999********************************************66666************************************** PP

       Pam17 105 lkqleekekeFlerikknRvdpssqsvsnpvpDYYGekigslkdYrqWLrdqrafnrkak 164
                 ++q+ +ke+eF++r+kknR++p+++s+snpvpDYYGeki+s+++Yr+WL+dqrafnrk++
  CCE26752.1 211 KTQMMQKESEFFARVKKNRANPANSSASNPVPDYYGEKIQSVAGYRRWLQDQRAFNRKKT 270
                 **********************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2146.67
//
Query:       CCE26753.1  [L=484]
Description: related to molybdenum cofactor biosynthetic protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-60  202.5   0.0      9e-60  202.1   0.0    1.1  1  ThiF            ThiF family
    3.3e-13   50.1   0.0    7.9e-13   48.9   0.0    1.7  2  Rhodanese       Rhodanese-like domain
  ------ inclusion threshold ------
      0.041   13.9   0.2        0.5   10.4   0.0    2.3  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
       0.18   11.4   0.1       0.27   10.8   0.1    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.21   12.0   1.3       0.42   11.1   1.3    1.5  1  GPS2_interact   G-protein pathway suppressor 2-interacting do


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.1   0.0   2.5e-63     9e-60       1     234 [.      68     313 ..      68     323 .. 0.89

  Alignments for each domain:
  == domain 1  score: 202.1 bits;  conditional E-value: 2.5e-63
                 THHHHHH..HHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-C CS
                 xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   1 ysrqlal..lgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteri 97 
                 y rq+ +  +g+d q +Lr++k+llvGaGglG++++ +La++G+g l lvD D++e+sNl+Rq+ +++  +G++K+e+a ++l+ +np ++ +a+++ +
  CCE26753.1  68 YGRQMIVpkFGRDAQLRLRAAKILLVGAGGLGCPAAAYLAGAGIGTLGLVDGDEVEVSNLHRQIAHSTGRVGMKKVESAITFLRGLNPTISYNAHVGHL 166
                 569998999****************************************************************************************** PP

                 CG.CCS-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEE.EE.CCS-ECTSS-TGGS.EECCCCEEHHHHHHCTE-B-HHHH CS
                 xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  98 td.etvleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvvi.ip.gktgcyeCldpsstedptekkvplctsiagnipaiattt 193
                 t+ +  +e++l+++D+V+d++D  ++r+l+ +acv  ++pl++a++ +++gq+ v   p gk +cy+C +p   + p++++v  c +  g   +i++++
  CCE26753.1 167 TSlN--AESILSQYDVVLDCTDHPTSRYLISDACVLLRKPLVSASAFQTSGQLIVLnTPpGKGPCYRCVFP---QPPPPDSVIGC-GEGG---IIGPVV 256
                 **55..69************************************************5448***********...***********.8888...****** PP

                 HHHHHHHHHHHHHHH................TTBCGGGCCEEEECCTTTTEEEEECC CS
                 xxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 194 avvaglaalellkll................sgkeklenslltqvdllesrfenvel 234
                 +v++ l+ale++kl+                +++++++  +   +d+ ++ f++v++
  CCE26753.1 257 GVMGVLQALEAIKLIargeietavqgeapprEQPPQTMLLFSGVADAPTPPFRSVRM 313
                 ***************887777777776666555554444455555666666666666 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.3   1.5e+04      66      90 ..      87     110 ..      73     119 .. 0.70
   2 !   48.9   0.0   2.2e-16   7.9e-13      10     105 ..     370     474 ..     361     476 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.3
   Rhodanese  66 kktvvvycdgggraaaaaallkklG 90 
                   ++ ++++gg +  aaa+l+  +G
  CCE26753.1  87 AAKILLVGAGGLGCPAAAYLAG-AG 110
                 5678888888888777777665.55 PP

  == domain 2  score: 48.9 bits;  conditional E-value: 2.2e-16
   Rhodanese  10 ekgkva....llDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellel...gidnkktvvvycdgggraaaaaallkk.....lGykn.vs 95 
                 ++g +     l+DvR++e +   +Ipg++nv   ++sr+  + ++   + e++ ++   ++  + +++v+c++g++++ aaa lk+      G ++ v 
  CCE26753.1 370 QDGPTTpppvLIDVRSEEHFGLASIPGSINV---PISRFMGHRRSPSSTEESWPDKvlaDLPADAPIYVVCREGNDSQLAAAKLKElgldrGG-ERfVG 464
                 4444445555**********99*********...99999999999999999999999999****************99999999963334355.999** PP

   Rhodanese  96 vldGGfkawk 105
                  ++GG++awk
  CCE26753.1 465 DIEGGLRAWK 474
                 *********8 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00014       0.5       9      56 ..      84     131 ..      77     150 .. 0.78
   2 ?    0.7   0.0      0.14     5e+02      68      87 ..     170     189 ..     156     200 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeel 56 
                   +l+ +k+ll+GaG ++  +a +L+ +g+  +  +  +   +++l +++
    CCE26753.1  84 RLRAAKILLVGAGGLGCPAAAYLAGAGIGTLGLVDGDEVEVSNLHRQI 131
                   6889*********************99998888877777777777776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
                   GHHHHHHT-SEEEE-SSSSS CS
  Shikimate_DH  68 elkellaeadvvisatasee 87 
                   + +++l+++dvv+ +t +++
    CCE26753.1 170 NAESILSQYDVVLDCTDHPT 189
                   34679***********9987 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   7.6e-05      0.27       2      44 ..      89     132 ..      88     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.6e-05
                     EEEEE--STTHHHHHHHHHHCTSEEE.EE-S-HHHHHHHCTTS- CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevi.gvDideekvdklnsgki 44 
                     ki  +G+G +G + aa la +g+  + +vD de  v++l+++  
      CCE26753.1  89 KILLVGAGGLGCPAAAYLAGAGIGTLgLVDGDEVEVSNLHRQIA 132
                     8999******************7655169*********998765 PP

>> GPS2_interact  G-protein pathway suppressor 2-interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.3   0.00012      0.42      35      78 ..       6      49 ..       2      57 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
  GPS2_interact 35 nidkvDREiakveqqiskLkkkqkeleeeaakpkeeekpvepss 78
                   ++++  REia++e+++++Lk +      ea++  e+ +   +++
     CCE26753.1  6 DVEQLTREIAQRETELAHLKARLTACGAEAQREREQGQGLAHEQ 49
                   577889******************99999999877766555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 3744.45
//
Query:       CCE26754.1  [L=69]
Description: uncharacterized protein CPUR_00223 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       193  (0.0107647); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 522.30
//
Query:       CCE26755.1  [L=215]
Description: uncharacterized protein CPUR_00224 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-36  124.6   2.7    4.2e-36  124.2   2.7    1.1  1  SLX9      Ribosome biogenesis protein SLX9


Domain annotation for each model (and alignments):
>> SLX9  Ribosome biogenesis protein SLX9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   2.7   2.3e-40   4.2e-36       2     131 .]      43     205 ..      42     205 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 2.3e-40
        SLX9   2 fklsKkdKrkiKheaflsKiek......sisksaskkkkkrkrrpskklvtdlesLadaLpdleeeegekkekkekeqaqqgkvkkaekslkskpgalk 94 
                 f ++K+dKr+iKh++fls+i++      + s+s+ +k+  r rrp++kl+t+le LadaLp+++++eg       ++ + +gk+++  ksl+sk+gal+
  CCE26755.1  43 FLSTKRDKRLIKHSSFLSRIATtaptssTGSRSKITKSSSR-RRPKNKLKTSLEGLADALPEIQDGEG-------ARPDLEGKIRH--KSLSSKKGALR 131
                 789*********************99877777777777777.99*****************9986666.......777899*****..9********** PP

        SLX9  95 rkkklekkEmerfkkvLa.....................................hpsfksnpfaaLrehisnt 131
                 rk+kl+++Em+rf++++a                                     ++  +sn++aaLr++is+t
  CCE26755.1 132 RKEKLVRGEMKRFGASMAvlaagaknengraggeddasmqgvqeqvsgdaqaasaAQGPTSNRWAALRGYISST 205
                 *******************************************************99**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1666.70
//
Query:       CCE26756.1  [L=243]
Description: related to sentrin-specific protease SENP8 (SUMO-specific protease) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-17   62.2   0.0    2.1e-16   60.5   0.0    1.9  1  Peptidase_C48  Ulp1 protease family, C-terminal catalytic dom


Domain annotation for each model (and alignments):
>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   1.1e-20   2.1e-16       1     185 [.      31     184 ..      31     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 1.1e-20
                    ---BHHHHHHHHHHHHHHHHH.CCCTCCCEEE--THHHHHHC..........SS.......TCHCHHHCTTCCCCCS..-GGG-SEEEEEEEC... CS
  Peptidase_C48   1 ewlndtvidfylkllaerles.seskaervhflntffvskLtkavkdfkknkskkkfkeskkkdlyngvrrwtrkvnkedlfdkdiiyiPined.. 93 
                    +wl+d +i+f+ ++l ++  +   + ++++ +l++ ++++L                    k+    ++r  + +   +d+ ++ + ++Pin +  
     CCE26756.1  31 DWLTDNNIAFWEEYLERE--TlPRYPQAKIILLRPSMTFLLM-------------------KE---PDMRHIRSA--LPDFSSVTHAFLPINDNrn 100
                    6**************644..45********************...................22...334333333..3789************99* PP

                    ......TTEEEEEEEETCCCEEEEE-TTS-SSH.HHHHHHHHHHHHHHHHHCCCCCSTT-.GGGEEEEEEE-----SSCCCHHHHHHHHHHHHHCT CS
  Peptidase_C48  94 ......gkHWvlliinlpdktililDSlislhtvkkenrpinnlkpyLleealkkkqkqldltpfeierltkvpqqknsgDCGiyvlkfiellaeg 183
                          g+HW+ll +++ d+   ++DSl++ ++      + +nl    ++e++          p + ++l+  pqq+n++DCG++v+  +++l+ +
     CCE26756.1 101 vgvaegGSHWSLLLVSILDGIAFHYDSLGGANY------AEANLAARKMSEICG--------RPLRFINLDDSPQQENGSDCGVFVCLLMRHLLVK 182
                    *********************************......555566666777766........4678899*********************999876 PP

                    HH CS
  Peptidase_C48 184 ap 185
                    + 
     CCE26756.1 183 RL 184
                    65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1815.62
//
Query:       CCE26757.1  [L=822]
Description: uncharacterized protein CPUR_00226 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 5345.18
//
Query:       CCE26758.1  [L=356]
Description: uncharacterized protein CPUR_00227 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2604.60
//
Query:       CCE26759.1  [L=426]
Description: probable glycerol-3-phosphate dehydrogenase (NAD) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-45  153.2   0.0    8.8e-45  152.5   0.0    1.3  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
    2.1e-40  138.3   0.2    3.2e-40  137.7   0.2    1.3  1  NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogen


Domain annotation for each model (and alignments):
>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.0   9.9e-49   8.8e-45       1     153 [.      15     196 ..      15     200 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.5 bits;  conditional E-value: 9.9e-49
                     -EEEE--SHHHHHHHHHHHTTT........--EEEE-S-H....................HHHHHHHHHSSBTTTBTT----TTEEEES-HHHHH CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaeng........hevrlwvree....................elieeineehenvkyLpgiklpenlvattdlaeal 67 
                     k++++G+G+wG+++Ak++aen+        ++v +wv+ee                    +l+ +in++henvkyLpgi+lp+n++a++ l +a+
      CCE26759.1  15 KVTIVGSGNWGSTIAKIVAENTkqhsqlfeEDVQMWVYEEdvvlgkdskyydesvgdkpqKLTSVINHHHENVKYLPGITLPSNITANPSLVDAV 109
                     79********************************************************************************************* PP

                     TT--EEEE---HHHHHHHHHHHCCC--TT-EEEE---SE..ET.TTEEHHHHHHHHH-S--EEEEESS--HHHHHTT--EEEEEEES- CS
  NAD_Gly3P_dh_N  68 kgadiivlvvPsqalrevlkklkgllkkkailvsliKGi..eegtlkllsevieeelkeekvavlsGpslAeEvakgkptavviaskd 153
                     k+++i+++++P+q++ +v+k+++g++ + a+ +s+iKG+   +++  l+se i + l+++ ++ lsG+++A+E+a++k+++++ia++ 
      CCE26759.1 110 KDSSILIFNLPHQFIGNVCKQVNGHILPFARGISCIKGVnvTDDGISLFSEWIGDGLNIY-CGALSGANIASEIAAEKWSETTIAYDP 196
                     ***************************************98899****************.************************975 PP

>> NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.2   3.5e-44   3.2e-40       1     140 [.     269     415 ..     269     417 .. 0.95

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 3.5e-44
                     -HHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHTSS...GGGGG.STTTHHHHHHHHHSCT.HHHHHHHHHHC.T--H CS
  NAD_Gly3P_dh_C   1 DviGvelagalKNviAiaaGivdglglgdntkaalitrglaEmarlakalgak...petfl.glaglgDlivtctsgksRNrrfGeelgk.gesl 90 
                     Dv+Gv+l galKN++A+aaG+vdg g+gdn+kaa++++gl+Em +++k++ ++   ++tf+  +ag++Dli++ ++g  RN+r++++ ++ g ++
      CCE26759.1 269 DVAGVSLSGALKNIVALAAGFVDGRGWGDNAKAAVMRIGLMEMVKFGKEFFGEtvqSQTFTeTSAGVADLITSSSGG--RNFRCAKKAVEqGITV 361
                     9************************************************977668788***99************99..********999899** PP

                     HHHHH.HHC.C--HHHHHHHHHHHHHHHTT...G.HHHHHHHHHHHS---HHHH CS
  NAD_Gly3P_dh_C  91 eeiek.eln.qvleGvetakevyellkkkgv..emplleavykilyegkspeel 140
                     +e+e+  ln q+l+G+ ta ev+++lk++g+  e+pl++av +il ++ +++++
      CCE26759.1 362 DEVEQkDLNgQKLQGTTTAYEVNSFLKARGLekEYPLFTAVNDILLGKRDVNDI 415
                     ****988999*******************9999***************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3078.43
//
Query:       CCE26760.1  [L=1559]
Description: probable 4-alpha-glucanotransferase / amylo-1,6-glucosidase (glycogen-debranching enzyme) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.4e-176  586.3   0.0   5.7e-176  585.9   0.0    1.1  1  hDGE_amylase  Glycogen debranching enzyme, glucanotransferase
   2.8e-119  398.5   0.0   8.5e-119  396.9   0.0    1.7  2  GDE_C         Amylo-alpha-1,6-glucosidase
      1e-85  287.5   0.0    1.7e-85  286.7   0.0    1.4  1  hGDE_central  Central domain of human glycogen debranching en
    8.1e-30  102.8   0.0    1.9e-29  101.6   0.0    1.7  1  hGDE_N        N-terminal domain from the human glycogen debra


Domain annotation for each model (and alignments):
>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  585.9   0.0  1.3e-179  5.7e-176       2     440 .]     145     588 ..     144     588 .. 0.95

  Alignments for each domain:
  == domain 1  score: 585.9 bits;  conditional E-value: 1.3e-179
                   EE-TTS-EEEEE-GGGS-.SHHHHHHHHHHHHHTT--EEEES--EEE-TT--TTSEEEEEEE-TTT-.....SSC.HHHHHHHHHHHHHH--EEEEE CS
  hDGE_amylase   2 elpldslsiqtvlskllG.pleeWekvlkeikekgYnmiHftPlqelGesnSpYSiadqleldkelfeekdkeekeedveklvkklekeygllsltD 97 
                    lpl +ls+++v+sk++G ++++Wek+l+ i+++gYnmiHftPlq +G+snSpYS++dql +d+++f     + +e+dv+kl+++le++++llsltD
    CCE26760.1 145 PLPLPALSVFSVISKFMGkYPTDWEKHLRGISDRGYNMIHFTPLQVRGSSNSPYSLYDQLGWDPACF-----PAGEADVKKLIDSLERQHSLLSLTD 236
                   589***************888**********************************************.....9999********************* PP

                   E--SEEETT-CCCCC-GGGS--TTT-GGGHHHHHHHCCCCTCCCHCCTSSS-SS---HCHHHHHHHHHHHHTCGGCTTGTTTS--CHHHHHHHHHST CS
  hDGE_amylase  98 vVlnHtannskwleehPeagYnletaPhLepAleLdkallefskeleklglpteikseedlekvmealkeevleklklweyyvvdvekeveelkeal 194
                   +VlnHta+n+kwle+hPeagYnl+taP+Le+A++Ld+ ll++s++l++lglpt+ ks +dl  ++ea+k++v++ ++lweyy++dve +++++ +a+
    CCE26760.1 237 IVLNHTAHNTKWLEQHPEAGYNLSTAPWLESAYVLDTSLLQLSSNLKSLGLPTDPKSVDDLMLLLEAIKTNVIAGIRLWEYYILDVEGDANAAVSAW 333
                   ************************************************************************************************* PP

                   TSS----S......S---..-TT.SHHHHHHHHHHHS-SSTTS--STT---B-HHHHHHHHHHHT...-SS.TTT....THHHHHHHHHHHHHHHHH CS
  hDGE_amylase 195 eesekkek......lelkeelkeaslkeeaklvkekalkeakkllerfsakidlevaaallkall...eeekkeeeeeeevaeklkkildelNlely 282
                   ++ ++++       +e  e+l +++l+ ++ +++++ l ++++l+erf++ id++vaa+ll+  +   e e++ +++++++  +++kil+ +N++ly
    CCE26760.1 334 TSASTSTLqgengiQEDLEKLGTSNLEGKIAFLRKHGLLRFDRLGERFRRAIDPNVAATLLSFCFgkyEGESSASTDKAAARLEMSKILEAMNVPLY 430
                   88855554588665555566666699************************************99855555566677788888899************ PP

                   HHHHHHHHHHHHHHHHHHHHHCS-SSS-------SSS-SS--SEEEE......E-TTSSEEEEEEEEE-TT--TTS-TTSTT--TTTTT--EEECCE CS
  hDGE_amylase 283 keldedvkaileqllnrikYerldekgPklgeitkkeplverYFtrlekeestkekdkkklalannGWvwgadplkdfaskeskaYLrRevivWgDc 379
                   +e+d dvk+ileql+nrikY rlde+gPklg+i++++pl+e+YFtrl+++e+t+++ +++l+lannGWvwg+++l+d+a++es++YLrRevivWgDc
    CCE26760.1 431 EEYDGDVKEILEQLFNRIKYVRLDENGPKLGPINAENPLIESYFTRLPSNETTSQHGNRDLMLANNGWVWGGNALVDNAGPESRVYLRREVIVWGDC 527
                   ********************************************************999************************************** PP

                   EEB---SSGGGSHHHHHHHHHHHHHHHCCSSEEEETTGGGS-HHHHHHHHHHHHHH-TT-E CS
  hDGE_amylase 380 vKLrYGkkpedspfLWehmteYtellAkifeglRiDNcHStPlhvaeylLdeaRkvrpdly 440
                   vKLrYG++pedsp+LW+hmt+Y+++lAk+f+glRiDNcHStP+hvae++LdeaR vrpdly
    CCE26760.1 528 VKLRYGSRPEDSPWLWKHMTKYARTLAKYFAGLRIDNCHSTPIHVAEHILDEARLVRPDLY 588
                   ************************************************************8 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.2   9.1e+02     372     382 ..     617     627 ..     542     628 .. 0.88
   2 !  396.9   0.0  1.9e-122  8.5e-119       3     382 ..    1073    1543 ..    1071    1544 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.2
       GDE_C 372 iaQAWSvaell 382
                 ++QAWS ael 
  CCE26760.1 617 AMQAWSTAELS 627
                 58******996 PP

  == domain 2  score: 396.9 bits;  conditional E-value: 1.9e-122
       GDE_C    3 sdqflvrrkseslkeeekgvsliAGlpwFs....d.WGRDtfIaLsGllLvtgrfeeAreilltFaktlrhGliPNlldegqealyntvdaslwlie 94  
                  s+q  ++ ks+sl ++++++s++AGlp+F+    + WGRD+fI+++Gl L tgrf+eA+e++l+Fa+ l+hG+iPNll++g  ++yn++d ++++++
  CCE26760.1 1073 SIQQTGYVKSASLWPNKAVPSIAAGLPHFAvewsRcWGRDVFISIRGLYLGTGRFDEAKEHILAFASVLKHGMIPNLLSSGDAPRYNSRDSVWFFLQ 1169
                  6677788899999********************978************************************************************* PP

       GDE_C   95 aiekYleyagd.aeil.....rriyp......................vlqeilqkyvqGtky....................kigldeedglisag 143 
                  +i++Y++ a++   +l     rr +p                      v+qe+lq+++ G+++                    +i++d+++gli++g
  CCE26760.1 1170 TIQDYVRLAPEgLGLLkstvkRRFLPyddtwfptddprayskestiedVIQEALQRHASGMEFreanagpqidsqmkdegfnqRIYVDWDTGLIFGG 1266
                  ***********88888666644444499********************************************************************* PP

       GDE_C  144 erlnqlTWmD.......akvkgepvtPRdGkaveinaLwyaaLkileelaekalge.........akkssykelaekikesfekkF......wdeaa 218 
                  ++ n++TWmD       a++kg p tPRdG+avei +L y++L +l++l+++              k+ +++e+a++ik++fe+ +      +   +
  CCE26760.1 1267 NQSNCGTWMDkmgeserAGSKGVPGTPRDGAAVEITGLLYSTLAWLSTLSQQGAYAyssvkptpqGKPVTFTEWASRIKDNFERCYfvplspE---D 1360
                  ***************************************************88887999*****999*****************996665442...1 PP

       GDE_C  219 ........aavakreilaDvlkssee.kdlslRpNflialslapellseekakkvlekaeeeLltplGlktLdpedpeYkgnYdgsedsrdaa.... 302 
                          +++++r+i++D++ks +e +d+++R Nf ia+++ap+l+++++a ++l  a+  L++p G+ tLdp+d +Y+++Y++seds+d+a    
  CCE26760.1 1361 dpkydvnpSVINRRGIYKDLYKSGKEyEDYQFRSNFPIAMTVAPALFNPDHAMHALCLADSVLRGPTGMATLDPADLNYRPYYRNSEDSTDFAtskg 1457
                  566788889**************************************************************************************** PP

       GDE_C  303 ..YHqGtvWvwllgsyveallkfgeklgkskea....leevkalLeglekhleeaglgslsElfdgdaellpkgciaQAWSvaell 382 
                    YHqG++W+w+ g++++allkf   +    +     +++v+ +L g ++++ ++ +++l+El+++ +e++p+++++QAWS ++l+
  CCE26760.1 1458 rnYHQGPEWLWPTGFFLRALLKFDLMQRGDPAGrveaYQQVTRRLVGCKEMIRRSAWAGLTELTQKGGEYCPDSSPTQAWSAGCLI 1543
                  **********************987543322224445***********************************************98 PP

>> hGDE_central  Central domain of human glycogen debranching enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.7   0.0   3.9e-89   1.7e-85       1     253 []     754     998 ..     754     998 .. 0.97

  Alignments for each domain:
  == domain 1  score: 286.7 bits;  conditional E-value: 3.9e-89
                   TTHHHHHHHHHHHHHHHTT--SEEEEEE.ETTEEEEEEEETTTSEEEEEEEE--S..S--.-.------EEECTEEEEEEEEEEEEE-S.....-.- CS
  hGDE_central   1 GIikakklLnklhkelakegfdevhvdqleediitvtRvnpkthesvvliartaFskpksskeekklkpiklsgtikevlleaslevksk...keey 94 
                   GI+ +kklLn++h+ ++k+g+de+h+++ ee++itv+Rv+p+++++++lia+taF  p+ ++++++l+p+kl gt++++l ++slev+++   ++++
    CCE26760.1 754 GIAGVKKLLNQIHTLMGKDGYDETHIHH-EEEYITVHRVHPESRKGYFLIAHTAF--PGCGNGNGNLNPVKLAGTRAQHLGSWSLEVDASqeaTKHA 847
                   9***************************.**************************..9999999***********************9988888899 PP

                   ---SSEE----EEEE.E----EEEE.......ETTTEEEEE--.S---SSEEEEEEEEETT--ST..HHHHHCSSHHHHCTT--TTHHHHHH--BHH CS
  hGDE_central  95 kkdekfinGlpsklkeelkleevkvlkieevedeeeesvievefenfppGsvvvfetelsevdek..ldefakselkealsklslvdlnvvLyrcee 189
                    ++++f+ Glps++  ++   +++v        +++++vi+v+ +nfppGs+++fet++++++++  ld++++s++++a+++l+l+dln++Ly+ce+
    CCE26760.1 848 ADNSQFLVGLPSRVI-DIGGVSLDV--------HGDDTVITVR-DNFPPGSIALFETWIPAAEHSagLDTYVTSGAQAAWNQLDLIDLNFLLYKCEA 934
                   999************.998888888........34789*****.*****************998899****************************** PP

                   HHHHHCTTS--S--BTTTB--SCSSHHHHHHHHHHHHHCT-TTSHHHHHHHH-SHHHHHHHHHG CS
  hGDE_central 190 EErdaskgkdgvYdvpnygklvYaGlqGvvsvlkeiiksndlghplcenLReGdWlldYivnRL 253
                   EE d s+g+dg+Ydvp++gklvYaGlqG++s++k++i++n+l+hplc+nLR+G+W+ldYi  RL
    CCE26760.1 935 EELDLSGGRDGTYDVPGHGKLVYAGLQGWWSIMKDVIRENNLAHPLCQNLRDGTWALDYILGRL 998
                   ***************************************************************8 PP

>> hGDE_N  N-terminal domain from the human glycogen debranching enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   4.3e-33   1.9e-29       1      89 [.      41     141 ..      41     142 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 4.3e-33
                 EEEEE-TT-GGGTT-EEEE-S-SSSS---TT--EEEE----SSS-EEEEEEE-S-CEEEEEEEEE-TTSS...............EEE---EEEEE--- CS
      hGDE_N   1 lrfviegasligrkgslwtNyPeegkeFeRdkfrelklkssfekdiyidipitkaGaFafyftydeeeele............e.kktkgsgYfnVePr 86 
                 lrf+ieg+s+i+r+gslw+N+Pe+g+eF+R++fre+kl+++f+++i++ ++i+++Ga+afy+ty+e+++le            e kk++  +Y++V+Pr
  CCE26760.1  41 LRFAIEGTSSICRHGSLWVNIPEKGQEFRRNSFREFKLTPDFNRTIEVPVEIHHPGAYAFYTTYAELPSLEphlskkssqdavElKKSP-LYYIDVAPR 138
                 89*******************************************************************99******998876445555.********* PP

                 EES CS
      hGDE_N  87 Ltv 89 
                 L++
  CCE26760.1 139 LQL 141
                 *98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 10491.75
//
Query:       CCE26761.1  [L=228]
Description: uncharacterized protein CPUR_00230 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.2   1.9       0.25   11.4   1.9    1.4  1  UPF0370   Uncharacterised protein family (UPF0370)
       0.21   11.8   0.8       0.33   11.2   0.8    1.3  1  DUF4381   Domain of unknown function (DUF4381)
        4.2    7.6   9.0        2.2    8.5   6.0    2.2  2  WSC       WSC domain


Domain annotation for each model (and alignments):
>> UPF0370  Uncharacterised protein family (UPF0370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.9   4.3e-05      0.25       2      39 ..     127     165 ..     126     173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.3e-05
     UPF0370   2 eWLadYW.WvillllvGillngikeLkrvdhkkfLdnkp 39 
                 +WL+ +W Wvi+l+++ + + gi     + ++++L++k 
  CCE26761.1 127 DWLSTHWqWVIMLVILVVGIAGIWIGACIWRRRYLRKKD 165
                 6**99999**99999999999999999999999999986 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.8   5.5e-05      0.33      14      49 ..     128     164 ..     125     186 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.5e-05
     DUF4381  14 wwPpapGwwlllaalll.llllvlalwllrrrkrnrr 49 
                 w    + w ++l++l++ ++ +++++  +rrr  +++
  CCE26761.1 128 WLSTHWQWVIMLVILVVgIAGIWIGACIWRRRYLRKK 164
                 5556677777775555586655555555554433222 PP

>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.0   0.00037       2.2      47      77 ..      47      77 ..      15      84 .. 0.83
   2 ?   -2.3   0.0      0.91   5.4e+03      14      37 ..     197     220 ..     188     225 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00037
         WSC 47 gseCyCgnslpaaavkassssCnasCsGdss 77
                ++eC+C+n   aa + a+s  C+ +C+Gd++
  CCE26761.1 47 YGECFCANGKVAAFSTAASGVCDNACPGDAK 77
                459***998888777777777********97 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.91
         WSC  14 llgpssasdstmtpekCaafCkak 37 
                 ++ +++++++ m++ek +++ ++k
  CCE26761.1 197 TFAEGRDTENGMDNEKSQKRKQKK 220
                 555666677777777766655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1679.26
//
Query:       CCE26762.1  [L=328]
Description: uncharacterized protein CPUR_00231 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-40  138.0   8.1      3e-40  137.2   8.1    1.4  1  HPP       HPP family


Domain annotation for each model (and alignments):
>> HPP  HPP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   8.1   1.7e-44     3e-40       1     122 []      84     208 ..      84     208 .. 0.98

  Alignments for each domain:
  == domain 1  score: 137.2 bits;  conditional E-value: 1.7e-44
         HPP   1 liaslGAsavllfavpesplaqPrnvvgGhlisalvGvaiaklfgl.....sllwlaaalavalaialmlltrtlhPPagAtaliavlgkeikelgwaf 94 
                 +++s+GA avl f+ +e+plaqPrn+++G++isa++G+a+aklf+l     +++w+ +ala+a a+alm+lt+t+hPPagAtal+av++++  ++gw +
  CCE26762.1  84 IVGSFGAAAVLEFYSIEAPLAQPRNAICGQVISAFTGIAMAKLFQLsdrftDIQWVGGALACASATALMALTKTVHPPAGATALLAVVDANLVRIGWFL 182
                 79******************************************99*****9***************************************99****** PP

         HPP  95 llvpvllgslllvlvalllnnlserrYP 122
                 l+v vllg++l+++vall+nn++ rr+P
  CCE26762.1 183 LPV-VLLGCALMLVVALLVNNIE-RRFP 208
                 *99.*****************97.8888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2434.88
//
Query:       CCE26763.1  [L=299]
Description: uncharacterized protein CPUR_00232 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-64  215.5   0.0    1.2e-63  214.9   0.0    1.3  1  Sulfotransfer_4  Sulfotransferase domain
    4.8e-06   27.1   0.0    0.00091   19.7   0.0    2.7  1  Sulfotransfer_3  Sulfotransferase family


Domain annotation for each model (and alignments):
>> Sulfotransfer_4  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   0.0   1.3e-67   1.2e-63       1     214 [.      18     249 ..      18     250 .. 0.92

  Alignments for each domain:
  == domain 1  score: 214.9 bits;  conditional E-value: 1.3e-67
  Sulfotransfer_4   1 kViglGlpRtGTkSlkaALeiLgykpvyhmeevieng.sdlkewaealeakkegk.....kpitredfdkllggydavvdvpaalfaeelleay 88 
                      +Vi+ Gl RtG+kSl++AL++Lg++++yhm++v+ n  +d   w++a++ k+ ++     +++tr+d+dkllg+ +a+vdvp+a+f+ +l+eay
       CCE26763.1  18 RVIVHGLHRTGSKSLRTALHQLGIHNCYHMVDVFANLeTDAGLWIRAMQSKFGDTdnakdEKWTRADWDKLLGDSQACVDVPSAFFTIDLAEAY 111
                      7***************************************************9889************************************** PP

  Sulfotransfer_4  89 PdakvIlteRdpekWlksmkktllalrse.tlsrllal..ldpllellaklvellralvrrlfgagsdaedeeaakeayeehnervrevvpaer 179
                      P+akv++ +RdpekW++s+k +++  +++  +  +l+   l +ll   +++ +l++a++++++  + +a ++++a ++y+e ++rvre++pa+r
       CCE26763.1 112 PEAKVVILNRDPEKWYESVKGSVALSMKPqSTIGALKNlyLATLLPDSREWSRLVKAIFQYCIPYD-HATEKDKAIAWYNESYRRVREAIPADR 204
                      ********************99998887745556666656778888899*************9996.99************************* PP

  Sulfotransfer_4 180 lLvykvkdGWepLceFLgkpvP...........devpFPrvndgee 214
                       L+++vkdG+ pLceFL++pvP           d +pFP+vnd+++
       CCE26763.1 205 RLEFSVKDGFRPLCEFLDVPVPtvrdeqtgqvtD-APFPHVNDRAS 249
                      **********************887655555533.8*******986 PP

>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     1e-07   0.00091      82     155 ..      80     142 ..      16     181 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1e-07
                      HHHTT-BHHHHHHHHHHHTTTSEEEEEESSGGG-HHHHHHHBSSEEEEEEE--H.HHHHHHHHHTT-------- CS
  Sulfotransfer_3  82 llraalasvilealarvpsyarwlvdKsPshlfrldlllelfPdAkfihlvRdpvdtvlssyvslfgkkresys 155
                       +ra++ +++ ++        +  +   Ps +f +d l+e++P+Ak+++l Rdp ++ ++s++  ++  +++ s
       CCE26763.1  80 WTRADWDKLLGDS--------QA-CVDVPSAFFTID-LAEAYPEAKVVILNRDP-EKWYESVKGSVALSMKPQS 142
                      3444444444444........22.225788888887.89***************.*****99887777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2230.35
//
Query:       CCE26764.1  [L=975]
Description: uncharacterized protein CPUR_00233 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-69  234.0   9.1    1.7e-66  224.1   3.9    2.2  2  ThrE      Putative threonine/serine exporter
    4.7e-05   23.5  25.4    6.2e-05   23.1   1.2    3.8  4  ThrE_2    Threonine/Serine exporter, ThrE


Domain annotation for each model (and alignments):
>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.1   3.9   1.9e-70   1.7e-66       2     240 ..     482     724 ..     481     725 .. 0.95
   2 !   12.8   0.2   6.3e-06     0.056      99     179 ..     736     816 ..     731     826 .. 0.83

  Alignments for each domain:
  == domain 1  score: 224.1 bits;  conditional E-value: 1.9e-70
        ThrE   2 lilrlGeiLlesGaetyrvedtmkriaralgleevevfvtptsiivsvdeeeesittvrrv.rsrgvnleklsevnelsreiaageisleeaeerLdeI 99 
                 ++l+l+++L+++Ga+t+r+e++m++ +r+l++ e +++++p ++i+s+d+  +++++v+ v   +g++l+kl +v++++++++++++++eea +rLd +
  CCE26764.1 482 YLLKLCRALMMYGAPTHRLEEYMTMSSRVLEI-EGQFLYIPGCMIISFDDSTTHTAEVKLVrVLQGIDLGKLRDVHDIYKDVVHDKLGVEEAARRLDVV 579
                 789*****************************.9**************7444455559999899*********************************** PP

        ThrE 100 erskpryprwlvvlaaglaaaafallf.ggdwidflvaflagllggllrlll.akrglnsfvleavaaflasllallavslglgln...pdaiiigsil 193
                  +++++++ w+ vl++gla+a++a+++ +g++id+++af++g+++gll+l++ a  +l+  v+e+ aa+++s+la+ ++s++ + +   +++++++si+
  CCE26764.1 580 LERRRKFQIWFLVLIYGLASACVAPFAfEGRFIDLPIAFILGCIVGLLQLVFaANNELYAHVFEVSAAVVTSFLARGFGSIK-DGQlfcFSTLAQSSIA 677
                 *************************998***********************9999*************************85.2334557********* PP

        ThrE 194 lLvPGlpltnavrDllsgdlvsGlaRlveailialaiafGivlalsl 240
                 l++PG+++++++++l+s+++v+G+ R+v+a++++l++++Gi++++sl
  CCE26764.1 678 LILPGYMVLCSSLELQSHNIVAGSMRMVYAMIYTLFLGYGITIGTSL 724
                 ********************************************998 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 6.3e-06
        ThrE  99 Ierskpryprwlvvlaaglaaaafallfggdwidflvaflagllggllrlll.akrglnsfvleavaaflasllallavslg 179
                 I  + p  + w+ +++ g +  +++++ +++w++ +v++++++ g+ +++++   +++ns + ++++a++++++a l  +lg
  CCE26764.1 736 IHCQNPLSREWYFLFVPG-FTLCLCIINQAKWKQTPVMLAMAIAGFCVNSYCtLYFSRNSQIPNMLGALTVGIMANLYSRLG 816
                 555555556666665555.46899****************************8899*******************9988853 PP

>> ThrE_2  Threonine/Serine exporter, ThrE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       0.7   6.3e+03      63      90 ..     498     525 ..     481     531 .. 0.75
   2 ?    3.2   9.2      0.01        92      22     127 ..     613     722 ..     592     725 .. 0.83
   3 !   23.1   1.2   6.9e-09   6.2e-05       2      68 ..     748     815 ..     747     818 .. 0.93
   4 !    6.7   0.6   0.00083       7.5      76     129 .]     886     961 ..     876     961 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.7
      ThrE_2  63 ellArriktPvtvflipgllplvPGlaa 90 
                 + l  ++ ++  v+ i g +  +PG  +
  CCE26764.1 498 HRLEEYMTMSSRVLEIEGQFLYIPGCMI 525
                 5555677888889999999999999765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.01
      ThrE_2  22 allvagllGavgwlvylllme.lgvsialasflaalaigllsellArriktPvtvflipg...llplvPGlaaYktvlslvqgnleeavengieallia 116
                 +l++a +lG++  l+ l++ +  +    +  + aa++ ++l++ ++ ++    ++f+  +   +  + PG  +  + l+l ++n+      ++ a++ +
  CCE26764.1 613 DLPIAFILGCIVGLLQLVFAAnNELYAHVFEVSAAVVTSFLARGFGSIKDGQLFCFSTLAqssIALILPGYMVLCSSLELQSHNIVAGSMRMVYAMIYT 711
                 578899999987777777766477888899999*******************9999876544488889****************999999999999999 PP

      ThrE_2 117 galavGlvlvs 127
                 + l  G+++ +
  CCE26764.1 712 LFLGYGITIGT 722
                 98988888866 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 6.9e-09
      ThrE_2   2 vilafiaalgfavifnvpkrallvagllGavgwlvylllme.lgvsialasflaalaigllsellArr 68 
                 ++++  ++l++++i+++++++ +v+  ++ +g++v+ +++  +  +  + ++l+al++g++++l++r+
  CCE26764.1 748 FLFVPGFTLCLCIINQAKWKQTPVMLAMAIAGFCVNSYCTLyFSRNSQIPNMLGALTVGIMANLYSRL 815
                 6788899****************************988877699**********************96 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.00083
      ThrE_2  76 flipgllplvP.GlaaYktvlslvqgn.....................leeavengiealliagalavGlvlvsli 129
                  + p+++  vP Glaa+ ++l+ +++                        +a++ +++++++a++l+vGl+++ li
  CCE26764.1 886 AMLPAIFVQVPsGLAATGSLLAGITTAneltgnrtshvtpsadtsgrlDGTAFNVLFSVIQVAIGLSVGLFMSALI 961
                 57788999999777778888888853334455556666666666666455799999***************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (975 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 6924.55
//
Query:       CCE26765.1  [L=438]
Description: uncharacterized protein CPUR_00234 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-38  132.6  20.8    1.8e-37  129.0   2.4    2.8  3  ThrE      Putative threonine/serine exporter
  ------ inclusion threshold ------
       0.12   12.5   0.3       0.23   11.5   0.3    1.4  1  DUF1707   Domain of unknown function (DUF1707)
        6.5    6.9  28.8       0.22   11.7   2.3    3.4  3  ThrE_2    Threonine/Serine exporter, ThrE


Domain annotation for each model (and alignments):
>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   2.4   2.9e-41   1.8e-37      59     240 ..      10     195 ..       2     196 .. 0.94
   2 !   15.8   2.1   1.2e-06    0.0069     103     178 ..     212     291 ..     202     305 .. 0.76
   3 ?   -1.6   1.5      0.23   1.4e+03     185     211 ..     364     391 ..     355     425 .. 0.59

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 2.9e-41
        ThrE  59 vrrv.rsrgvnleklsevnelsreiaageisleeaeerLdeIerskpryprwlvvlaaglaaaafallf.ggdwidflvaflagllggllrlll.akrg 154
                 v++v  s g++l++ ++v+++  ++a+g++++ee  +rLde++ ++++y+ w+ +l++gla+a++a++  gg++id+++af++g+++g+l+l++ ak++
  CCE26765.1  10 VEQVhASEGIDLGRAQDVHDINMDVAHGRLGVEEGARRLDEVSGARSEYKVWFLILMYGLASACVAPFGfGGRLIDMPIAFILGCTVGVLQLVFaAKSE 108
                 55676899************************************************************88***********************99**** PP

        ThrE 155 lnsfvleavaaflasllallavslglgln...pdaiiigsillLvPGlpltnavrDllsgdlvsGlaRlveailialaiafGivlalsl 240
                 ++ +v+e++ a+++s++a+ ++s++ g +   ++a++++si++ +PG+++++++ +l s++ +++++R+++++ ++l ++ Gi +++ l
  CCE26765.1 109 RYAYVFEFLPAAITSFMARGFGSINNG-QlfcFSALAQSSIVMCLPGYVILCGSFELHSRK-NAASTRMAYVVAYILRLGCGIPIGAVL 195
                 ***********************8643.24567************************9998.7899*****************999877 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.2e-06
        ThrE 103 kpryprwlvvlaagl.aaaafallfgg.dwidflvaflagllg..gllrlllakrglnsfvleavaaflasllallavsl 178
                 +p  + w  +++ag+ ++ +++ll++  ++++++va++ag+++  +++ +l+++ +++ ++  +++a++++++a+l  +l
  CCE26765.1 212 PPLSRGWCFLFVAGFtVCLCIILLAKWrQIPAMMVAAVAGFCVisYITEHLTNHLSHFALIPPMLGALTVAIIASLYSRL 291
                 555566777777766256677777744489999999999987643566777799999999**************998875 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.23
        ThrE 185 daiiigsillLvP.GlpltnavrDllsg 211
                 +a ++ ++l+LvP Gl+ t +++  +  
  CCE26765.1 364 AATMLPGLLVLVPaGLAATGSLLAGIHT 391
                 6778888888888667777776655544 PP

>> DUF1707  Domain of unknown function (DUF1707)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   3.9e-05      0.23      12      41 ..      27      56 ..      20      58 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.9e-05
     DUF1707 12 velLrealaeGrLtldEfdeRleaalaArt 41
                v+ ++  +a GrL ++E  +Rl+++  Ar+
  CCE26765.1 27 VHDINMDVAHGRLGVEEGARRLDEVSGARS 56
                56666779********************96 PP

>> ThrE_2  Threonine/Serine exporter, ThrE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   6.2       2.9   1.7e+04      24     100 ..      87     167 ..      69     199 .. 0.60
   2 ?   10.6   4.9   7.6e-05      0.46       2      68 ..     220     291 ..     219     298 .. 0.78
   3 ?   11.7   2.3   3.7e-05      0.22      76     128 ..     366     425 ..     361     426 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2.9
      ThrE_2  24 lvagllGavgwlvylllme.lgvsialasflaalaigllsellArriktPvtvflipg...llplvPGlaaYktvlslvqg 100
                 ++a +lG+   ++ l++ +  +    +  fl a + +++++ ++ +     ++f+  +   ++   PG  +    ++l ++
  CCE26765.1  87 PIAFILGCTVGVLQLVFAAkSERYAYVFEFLPAAITSFMARGFGSINNGQLFCFSALAqssIVMCLPGYVILCGSFELHSR 167
                 555566665444444444435555555667777777888888888888888877765433377777777666555555544 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 7.6e-05
      ThrE_2   2 vilafiaalgfavifnvpkrallvagllGavgwlvylllme.....lgvsialasflaalaigllsellArr 68 
                 +++++ +++++++i+ +++r+++ + + +++g++v  +++e     l +   +  +l+al++++++ l++r+
  CCE26765.1 220 FLFVAGFTVCLCIILLAKWRQIPAMMVAAVAGFCVISYITEhltnhLSHFALIPPMLGALTVAIIASLYSRL 291
                 6788999*************************9998877665433333444556677888888888888875 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 3.7e-05
      ThrE_2  76 flipgllplvP.GlaaYktvlslvqgn......leeavengiealliagalavGlvlvsl 128
                  + pgll lvP Glaa+ ++l+ + +       +++av+ g++ l++a ++++G++l  l
  CCE26765.1 366 TMLPGLLVLVPaGLAATGSLLAGIHTTpsavnaTATAVHLGFNLLQVATGISFGVSLGAL 425
                 689********9999999999999866666666**********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3479.10
//
Query:       CCE26766.1  [L=254]
Description: related to integral membrane protein PTH11 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1912.15
//
Query:       CCE26767.1  [L=437]
Description: uncharacterized protein CPUR_00236 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-38  131.1  20.0    7.2e-38  130.3   2.8    2.9  3  ThrE      Putative threonine/serine exporter
  ------ inclusion threshold ------
      0.081   13.1  26.2       0.56   10.4   3.7    3.3  3  ThrE_2    Threonine/Serine exporter, ThrE


Domain annotation for each model (and alignments):
>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   2.8     8e-42   7.2e-38      62     240 ..      13     197 ..       1     198 [. 0.93
   2 !   11.4   1.7   1.7e-05      0.15     103     178 ..     214     293 ..     211     307 .. 0.74
   3 ?    0.1   1.1     0.046   4.2e+02     184     214 ..     365     397 ..     355     426 .. 0.63

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 8e-42
        ThrE  62 v.rsrgvnleklsevnelsreiaageisleeaeerLdeIerskpryprwlvvlaaglaaaafallf.ggdwidflvaflagllggllrlll.akrglns 157
                 v  s g++l+++++v+++  ++a++++++eea +rLde++ ++++y+ w+ +l++gla+a++a++  gg++id+++af++g+++g+l+l++  k+g+  
  CCE26767.1  13 VrASEGIDLGRVQDVHDINMDVAHDRLGVEEAGRRLDEVSGARSEYKVWFLILMYGLASACVAPFGfGGRLIDLPIAFILGCTVGVLQLVFaDKSGRHA 111
                 55799************************************************************88***********************999****** PP

        ThrE 158 fvleavaaflasllallavslglgln..pdaiiigsillLvPGlpltnavrDllsgdlvsGlaRlveail.ialaiafGivlalsl 240
                  vle++aa+++s++a+ ++s++ g+   ++a++++si++ +PG++ +  + ++ ++++v+G +R+v+++  ++l+++fGi +++ l
  CCE26767.1 112 EVLEFLAAAITSFMARGFGSINHGQLfcFSALAQSSIVMCLPGYAALLCSFEIKRRQIVAGGTRMVYTMArYTLSLGFGIPVGAGL 197
                 ********************975444557***************************************96589******9988765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 1.7e-05
        ThrE 103 kpryprwlvvlaagl.aaaafallfgg.dwidflvaflagllggllrlllakrglnsfvle..avaaflasllallavsl 178
                 +p  + w  ++a+g+ ++ +++ll++  +++++l++++ag+++   +      +l +f+l   ++++++++++a+l  +l
  CCE26767.1 214 PPLSREWCILFASGFtVCLCIILLAKWrQIPAMLAIAVAGFCVVSYSTEYLTTHLLPFALIppMLGSLTVAIIASLYSRL 293
                 56677899999998834666666664458999999999999888777777777777766544489999999999888775 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.046
        ThrE 184 pdaiiigsillLvP.Glpltnavr.Dllsgdlv 214
                 ++a ++ ++l+LvP Gl+ t++++ D+ +   v
  CCE26767.1 365 AAATMLPGLLVLVPaGLAATCSLLaDINTPSAV 397
                 478899999999998899999974266555544 PP

>> ThrE_2  Threonine/Serine exporter, ThrE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.8   0.00089       7.9      23     120 ..      86     192 ..      69     200 .. 0.74
   2 ?   10.4   3.7   6.3e-05      0.56       3      67 ..     223     296 ..     221     302 .. 0.69
   3 ?    7.4   1.5    0.0005       4.5      76     128 ..     368     424 ..     363     425 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00089
      ThrE_2  23 llvagllGavgwlvylllme.lgvsialasflaalaigllsellArriktPvtvflipg...llplvPGlaaYktvlslvqgn.....leeavengiea 112
                 l++a +lG+   ++ l++    g + ++  flaa + +++++ ++ + +   ++f+  +   ++   PG aa  + +++  ++     ++++++    +
  CCE26767.1  86 LPIAFILGCTVGVLQLVFADkSGRHAEVLEFLAAAITSFMARGFGSINHGQLFCFSALAqssIVMCLPGYAALLCSFEIKRRQivaggTRMVYTMARYT 184
                 67888889877777777776699*****************************999886544499999**999999988888773222244444444444 PP

      ThrE_2 113 lliagala 120
                 l+  +++ 
  CCE26767.1 185 LSLGFGIP 192
                 44444444 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 6.3e-05
      ThrE_2   3 ilafiaalgfavifnvpkrallvagllGavgwlvylllme........lg.vsialasflaalaigllsellAr 67 
                 ++a  +++++++i+ +++r+++ +  ++++g++v  + +e        +  ++ +l+s++ a++ +l+s+l +r
  CCE26767.1 223 LFASGFTVCLCIILLAKWRQIPAMLAIAVAGFCVVSYSTEyltthllpFAlIPPMLGSLTVAIIASLYSRLSGR 296
                 7888899***************9999999999887666655322244422355566666666666666666665 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0005
      ThrE_2  76 flipgllplvP.GlaaYktvlslvqgn...leeavengiealliagalavGlvlvsl 128
                  + pgll lvP Glaa+ ++l+ +++     ++ ++ g++ l +a ++++G++l  +
  CCE26767.1 368 TMLPGLLVLVPaGLAATCSLLADINTPsavKATTIHLGLSLLHVATGISFGVSLGAV 424
                 689********6666666666666544666788899999999999999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3469.84
//
Query:       CCE26768.1  [L=847]
Description: related to vacuolar membrane protein HMT1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-31  109.8   0.0    3.8e-31  108.4   0.0    1.7  2  ABC_tran      ABC transporter
    3.1e-17   63.1  12.1    3.1e-17   63.1  12.1    2.0  2  ABC_membrane  ABC transporter transmembrane region
     0.0027   17.2   0.0     0.0079   15.6   0.0    1.3  1  SMC_N         RecF/RecN/SMC N terminal domain
     0.0037   17.0   0.0     0.0074   16.0   0.0    1.5  1  AAA_24        AAA domain
  ------ inclusion threshold ------
      0.029   14.6   0.1       0.12   12.7   0.1    1.9  1  AAA_22        AAA domain
      0.043   13.9   0.0       0.09   12.8   0.0    1.4  1  DUF87         Helicase HerA, central domain
      0.089   12.5   0.2       0.35   10.6   0.2    1.9  1  AAA_30        AAA domain
      0.097   11.8   0.0       0.16   11.1   0.0    1.3  1  G-alpha       G-protein alpha subunit
      0.099   12.9   0.1        2.2    8.6   0.1    2.9  1  SbcCD_C       Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.4   8.7e+03      64      87 ..     466     510 ..     424     536 .. 0.54
   2 !  108.4   0.0   1.9e-34   3.8e-31       1     137 []     624     773 ..     624     773 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.4
                 E-SS--S-TTSBHHHH......................HHHTCHHH CS
                 xxxxxxxxxxxxxxxx......................xxxxxxxx RF
    ABC_tran  64 lpqepqlfpeltvren......................esdeeiek 87 
                 ++ e +l + +t+ ++                      +s++ +++
  CCE26768.1 466 VENE-TLYDSITNWQTvayhnrqkyeesryatsiwnaiQSQRAMYD 510
                 2222.33333333333444444544444444444444444444444 PP

  == domain 2  score: 108.4 bits;  conditional E-value: 1.9e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esde 83 
                 l++vs++ ++g++va+vGe+G GKSt lkll++ ++ t+G+i +dg+d+++ +l+slr  +g +pq+p++f+++ + +n                 + +
  CCE26768.1 624 LQDVSFTAQPGQRVALVGETGGGKSTTLKLLYRFYDVTAGSISIDGQDIRDVTLTSLRDILGAVPQDPSVFDQT-LMQNllyarpgaseaeaveaCKAA 721
                 789***********************************************************************.66666******6655444333333 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +i++ + k+ + +   t++++++  LSgG+ qr+a+ar++l++pk+++lDE+t+
  CCE26768.1 722 RIHHQIMKFPDGY--RTKLGERGVRLSGGELQRLAIARVILRRPKIVVLDEATS 773
                 3554444555444..88999999*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.6      0.78   1.6e+03      11      65 ..      91     143 ..      86     146 .. 0.83
   2 !   63.1  12.1   1.5e-20   3.1e-17       2     273 ..     291     561 ..     290     562 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.78
                   HHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  11 agvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyll 65 
                   ++ l+ + ++++   ++++l  g++ +  l  y+l+++l +++++i+  l s++l
    CCE26768.1  91 SETLYAFSSILIWFAISIFLIEGESPF--LPAYILAWALGAVFDAITLGLTSSTL 143
                   566788888888888999999999999..99999999999999999998887765 PP

  == domain 2  score: 63.1 bits;  conditional E-value: 1.5e-20
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCH CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldkgdpetea.lnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsv 97 
                   i+++l++ ++ +l  ++p  ++ +++ ++++  + ++    +++++ll++ ++++ l+++qs   + +++ +  +l + +f+++++++m ++ ++s+
    CCE26768.1 291 IALMLCIGAQRFLTYMVPRQFSLLTEAVTQSTATGQAPwKELIIWTLLSFPIGSG-LTTIQSLAGTRISQFAYQQLTTLAFRHVMNLSMDYHTSKST 386
                   67788999999999999***********999555553404555555555555555.6689************************************* PP

                   HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH CS
  ABC_membrane  98 GellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVk 194
                   G+++  + ++ s+l  +l +   +   ++  fv+++i++  + + + +++la++ + ++v++  + ++ ++++k +++    +  +++s+++++tV 
    CCE26768.1 387 GRVTKAI-EQGSNLGYMLDSLYETAPVFVDFFVALFILSSRFDVTMGFIILATSMVHLYVAYKGNLKTVQIERKVNETSRVENETLYDSITNWQTVA 482
                   *******.688889999999999999999999***************************************************************** PP

                   HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 195 afgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                   + +r++y+++++  ++ +a ++++ +  +   ++++  +++ + ++ a+ + +  v +g+ s+++++++ls++a+++ +
    CCE26768.1 483 YHNRQKYEESRYATSIWNAIQSQRAMYDFHQYIGMAESCVMKIGQVTAMALVAKRVANGTDSISSFIFVLSYWATISYP 561
                   **************************************************************************99877 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     4e-06    0.0079     135     211 ..     565     815 ..     445     821 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4e-06
                 T.................................................................................................. CS
                 x.................................................................................................. RF
       SMC_N 135 e.................................................................................................. 135
                                                                                                                    
  CCE26768.1 565 Mayniraatthvidaewlyqlmqtkpsvqdkpcardikmhggqvefknvsfaydparpilqdvsftaqpgqrvalvgetgggksttlkllyrfydvtag 663
                 055555555555555555555555555555555555555566666666666666666666666666666666666666666666666666666666666 PP

                 ................................................................................CS-HHHHHHHHHHHHHHHH CS
                 ................................................................................xxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ................................................................................lLSgGektLvalaLlfAiq 154
                                                                                                  LSgGe + +a+a +    
  CCE26768.1 664 sisidgqdirdvtltslrdilgavpqdpsvfdqtlmqnllyarpgaseaeaveackaarihhqimkfpdgyrtklgergvRLSGGELQRLAIARV---- 758
                 666666666666666666666677777777777777777777778888888888888888888888888888888888889*****998887766.... PP

                 CCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 155 kvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                   ++  +++lDe  +a D +  + + + + + s    +++i++r  ++  ad ++ v
  CCE26768.1 759 ILRRPKIVVLDEATSAVDSETESLIQQAIGALSAGRTVFMIAHRLSTVMGADLILVV 815
                 4566779****************************************9999977766 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.7e-06    0.0074       3      88 ..     635     785 ..     633     789 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.7e-06
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie..swedfldevvel........................................ 59 
                 ++++++G+ g GK+t++k l     f d+ +G+ s+d+ ++ d++  s+ d+l +v ++                                        
  CCE26768.1 635 QRVALVGETGGGKSTTLKLL---YRFYDVTAGSISIDGQDIRDVTltSLRDILGAVPQDpsvfdqtlmqnllyarpgaseaeaveackaarihhqimkf 730
                 799*****************...7799*****************9999999999998889999999999999999999999999999999999999999 PP

      AAA_24  60 ..........................aaeladyktlviDtideleelclaevirq 88 
                                           +  l++ k++v+D ++ +++  ++ +i+q
  CCE26768.1 731 pdgyrtklgergvrlsggelqrlaiaRVILRRPKIVVLDEATSAVDSETESLIQQ 785
                 9999999999999999999999999989999999999999999999988888887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     6e-05      0.12       8      61 ..     637     728 ..     632     788 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee......................................erpevvfvtlpsstsskdllrell 61 
                 ++++Ge+G GK+t+l+ l + +d  a                                          +rp+  + ++ + ++ + + +++ 
  CCE26768.1 637 VALVGETGGGKSTTLKLLYRFYDVTAGSISidgqdirdvtltslrdilgavpqdpsvfdqtlmqnllyARPGASEAEAVEACKAARIHHQIM 728
                 689*****************998765555565555555555555555555555555555554444444444444444444445555555544 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.5e-05      0.09      24      44 ..     635     655 ..     633     657 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.5e-05
       DUF87  24 rHlAilgsTGsGKSntvavLl 44 
                 +++A +g+TG GKS+t ++L 
  CCE26768.1 635 QRVALVGETGGGKSTTLKLLY 655
                 679***************996 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00017      0.35      15     112 ..     631     786 ..     627     800 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
      AAA_30  15 tsgdrvavltGpAGtGKttalkalreaweaa.g.................grviglAptgkaA..kvLa...........eelgieastiakllkrlk. 81 
                 +++ + ++l+G  G GK+t+lk l + ++   g                 ++++g+ p+      ++L            e+  +ea   a++ ++   
  CCE26768.1 631 AQPGQRVALVGETGGGKSTTLKLLYRFYDVTaGsisidgqdirdvtltslRDILGAVPQDPSVfdQTLMqnllyarpgasEAEAVEACKAARIHHQIMk 729
                 556667899***************999998856888888888777777774444444443222112222344444444433333444444444444445 PP

      AAA_30  82 ..........................grarlepgtllivDEagmvdtkqlaallkaa 112
                                           +r+ l++ ++++ DEa  +  +++++l+++a
  CCE26768.1 730 fpdgyrtklgergvrlsggelqrlaiARVILRRPKIVVLDEATSAVDSETESLIQQA 786
                 668999999999999999999999987677888899999999999999999998887 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.9e-05      0.16      25      81 ..     636     690 ..     622     783 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.9e-05
                 EEEEEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHHT CS
     G-alpha  25 kllllGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrsiktilealesl 81 
                 ++ l+G+ ++GKsT+lk l ++y+ +     + +  + i+  +++s+++il a+ + 
  CCE26768.1 636 RVALVGETGGGKSTTLKLLYRFYDVTA--GSISIDGQDIRDVTLTSLRDILGAVPQD 690
                 799********************6554..4456677889999999999999999883 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0011       2.2      62      80 ..     761     779 ..     722     792 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0011
     SbcCD_C  62 palrlvfLDEAFsklDees 80 
                 +++++v+LDEA s +D+e+
  CCE26768.1 761 RRPKIVVLDEATSAVDSET 779
                 3689************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 5582.25
//
Query:       CCE26769.1  [L=530]
Description: related to low-affinity hexose transporter HXT3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-124  416.4  19.8   1.7e-124  416.2  19.8    1.0  1  Sugar_tr  Sugar (and other) transporter
    4.5e-22   78.5  43.3    5.3e-16   58.5  15.5    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.2  19.8  1.9e-128  1.7e-124       4     452 .]      24     481 ..      21     481 .. 0.98

  Alignments for each domain:
  == domain 1  score: 416.2 bits;  conditional E-value: 1.9e-128
                 HHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS- CS
    Sugar_tr   4 vaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsv 102
                 ++++gg+lfgYdtg+i+a+l + +f  +f +++++++ke   +  +l+vs++++G++iG+l + + +d++GR+ks+l+++v++++g v+q++a   +s+
  CCE26769.1  24 TTSIGGFLFGYDTGMISAILLFKDFTARFAQTNADGDKEWVPIIKSLLVSLMSIGCLIGALSGAYTADWWGRRKSMLFGVVVYIAGYVIQITAM--TSW 120
                 689************************************9******************************************************..789 PP

                 TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHH CS
    Sugar_tr 103 evlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.adgwrillglqlvpallllilllflPESPrylve 200
                   +++gR+++G+g+G  sv vPm+++E Ap ++Rga+v  yql++t+Gilva i+++g+ +++     wri +++ ++++l l +++l+lPESPr+l  
  CCE26769.1 121 VHIMMGRFVAGLGIGSLSVGVPMFQAESAPMEIRGAVVASYQLMVTIGILVANIINYGVRNIDTpGGSWRIVIAIGVFFSLPLGLGVLVLPESPRWLAA 219
                 9999*******************************************************999998999******************************* PP

                 TT-HHHHHHHHHHHHHC......HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH.......HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH CS
    Sugar_tr 201 kgkeeeakevlaklrge......edadrelaeekdsleaeqeeekaswkellsskt....vrqrlligvvlqifqqltGinaimyysptifenlglsks 289
                 +g+ ++a+++la+lrg        +++++++ +k+sle+e++  + +w e ++ kt    v++r+l+gv ++++qq tG+n+++yy+ +ife++ ++++
  CCE26769.1 220 RGDWKQARTSLARLRGLqhdpdnRLVEDDVNGIKESLEKERQVGTGTWLECFKPKTdipkVLYRTLLGVSIHFLQQWTGVNYFFYYGASIFESANVKDP 318
                 **************999888877888999999********8888**********99******************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHH CS
    Sugar_tr 290 llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRska 387
                 +l+ +i+g+vn+++tf+++++v++fGRR  l+lGa+ +a+ ++i++ i ++l ++k++  +i++i+  +++ia fa++wgp+ wv++ E fp+++Rsk 
  CCE26769.1 319 VLTQLILGAVNVFMTFFGLYVVEKFGRRWPLILGALWQAAWLLIFAaIGTALPPEKHTISGIIMIISACMYIASFAATWGPTAWVVIGESFPLRTRSKQ 417
                 **********************************************99999999999****************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 388 laiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +++a+a nwl nf i++l+pi+t+ i+ + +++vf g +++++++v++f++e   ++le+++ ++
  CCE26769.1 418 ASLATAGNWLGNFMIGFLTPIATKGIS-YSFGFVFFGTNIAAALIVYLFLYESRTLSLEHVDLMY 481
                 ***************************.********************************99775 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5  15.5   5.9e-20   5.3e-16       2     229 ..      26     305 ..      25     328 .. 0.74
   2 !   22.7  23.8   4.4e-09     4e-05      43     179 ..     327     473 ..     284     507 .. 0.75

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 5.9e-20
       MFS_1   2 llaaflsalarsilgpalplalaedlg.............ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw 86 
                 ++++fl +++ ++++++l     +d++             + p   +ll++l ++g+++++l +++ +d +Grr+ +l+g++++++g +++ ++  ++w
  CCE26769.1  26 SIGGFLFGYDTGMISAILLF---KDFTarfaqtnadgdkeWVPIIKSLLVSLMSIGCLIGALSGAYTADWWGRRKSMLFGVVVYIAG-YVIQITaMTSW 120
                 6899999999**99999974...5555444477777777788888******************************************.66664236678 PP

       MFS_1  87 .lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.....Wravfyilaivsllafvlfllllpeepper 179
                   ++ +r+++Glg g+l  ++  + a+ +p e rg +++ +++++ +G++++ ++   +  ++      Wr v  i  ++sl +++ ++l+lpe+p+  
  CCE26769.1 121 vHIMMGRFVAGLGIGSLSVGVPMFQAESAPMEIRGAVVASYQLMVTIGILVANIINYGVR-NIDtpggsWRIVIAIGVFFSLPLGL-GVLVLPESPRWL 217
                 79**************************************************99998554.33344566*************9999.558888888877 PP

       MFS_1 180 krkspkeee.................................kgtgpaplvp....awkallkdp.....vlw....illialllfffgfsglltl 229
                 +   ++++                                           +     w + +k++     vl+     + i++l  ++g+++++++
  CCE26769.1 218 AARGDWKQArtslarlrglqhdpdnrlveddvngikeslekeR--------QvgtgTWLECFKPKtdipkVLYrtllGVSIHFLQQWTGVNYFFYY 305
                 7777777756666666666666666666665544444332221........022233444444443333322122234555555555555555555 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 4.4e-09
       MFS_1  43 lgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa.......sslw.lllvlrv...lqGlgagalfpagaaliadwfpkeergraigllsag 129
                 ++ +++++++ +++++fGrr+ l+lg+l+ a++ll+++ ++       +++  ++++  +   +++++ ++  p++ ++i + fp + r++  +l++ag
  CCE26769.1 327 AVNVFMTFFGLYVVEKFGRRWPLILGALWQAAWLLIFAaIGtalppekHTISgIIMIISAcmyIASFA-ATWGPTAWVVIGESFPLRTRSKQASLATAG 424
                 34579999999**********************55555331446677755555444444423244444.78889999********************** PP

       MFS_1 130 fslGailgpllggllasslgWravfyilaivsllafvlfllllpeepper 179
                 + lG  +   l ++ +  ++++  f++++   + a++ ++l+l+e+++ +
  CCE26769.1 425 NWLGNFMIGFLTPIATKGISYSFGFVFFGTNIAAALI-VYLFLYESRTLS 473
                 *****8888*******999999999999998888866.667776665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.55
# Mc/sec: 2901.11
//
Query:       CCE26770.1  [L=215]
Description: uncharacterized protein CPUR_00239 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1553.49
//
Query:       CCE26771.1  [L=230]
Description: probable Sno-type pyridoxine vitamin B6 biosynthetic protein SNO1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-57  193.0   0.0    9.2e-56  188.7   0.0    2.0  1  SNO            SNO glutamine amidotransferase family
    3.1e-09   36.7   0.0    7.2e-08   32.3   0.0    2.1  2  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
    0.00013   21.8   0.0     0.0011   18.8   0.0    2.0  1  GATase         Glutamine amidotransferase class-I
    0.00024   20.8   0.0    0.00037   20.2   0.0    1.2  1  Peptidase_S51  Peptidase family S51
     0.0086   15.9   0.0      0.015   15.1   0.0    1.3  1  DJ-1_PfpI      DJ-1/PfpI family
  ------ inclusion threshold ------
      0.022   14.5   0.0       0.18   11.6   0.0    2.2  2  Peptidase_C26  Peptidase C26
       0.17   10.9   0.0        7.7    5.5   0.0    2.3  2  GATase_5       CobB/CobQ-like glutamine amidotransferase doma


Domain annotation for each model (and alignments):
>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.7   0.0   3.6e-59   9.2e-56       1     186 [.       8     227 ..       8     229 .. 0.91

  Alignments for each domain:
  == domain 1  score: 188.7 bits;  conditional E-value: 3.6e-59
                 EESSSSSHHHHHHHHHHTTSEE......EEE-SGGGGCC-SEEEE-SS-HHHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHHCCEETTB...SS CS
         SNO   1 vlalqGaveehveaikkclaen......ktvkrkedlaevdaliiPGGestamskliertglyedllefvknsekvvlGtCaGlillskelene...lv 90 
                 vlalqG ++eh++ ++++ a+       + v++ e+la++d+liiPGGest++s ++ + gl+e+l+++vk  +++v+GtCaGlills+e +       
  CCE26771.1   8 VLALQGGFIEHINLVRAAAAQLhlnvttLEVRTAEELARCDGLIIPGGESTTISFVAAQSGLLEPLRDYVKTQKRPVWGTCAGLILLSNEANATkknGQ 106
                 8**************999988788899899**********************************************************99877633234 PP

                 -SS--CCEEEETTTT-SCCGEEEEEEEETTTC...SEEEEEESS--EEEEE-.T....TTCEEEEECT...................TEEEEEEETTEE CS
         SNO  91 ktlellkvkvkrnafGrqvdsfekeldfknli...ekftavfiraPvieeildd....eavkvlyeld...................geivvakqkkil 163
                 + ++ l v+v+rn fGrq++sfe+++d+  l+    +f++vfiraPv+eeil+       v+vl +l+                   g+i++++q++il
  CCE26771.1 107 ELIGGLGVRVHRNHFGRQIESFEADMDLPFLGegsSPFPGVFIRAPVVEEILSAsgsgSDVEVLAKLPgrvdrmkagvsqantsndaGDIIAVRQGNIL 205
                 4567799*********************999988889**************97522226899***9999999*************999*********** PP

                 EESS-GGGSTTHCHHHHHHHHHH CS
         SNO 164 atsfhPelaeddirvhdyfveev 186
                 +tsfhPel++d  r+h ++++++
  CCE26771.1 206 GTSFHPELTND-ARIHAWWLKRI 227
                 *********98.9*****99876 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.8e-11   7.2e-08      29     110 ..      37     114 ..      18     143 .. 0.76
   2 ?    2.6   0.0     0.035        91     167     194 ..     188     216 ..     168     218 .. 0.69

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.8e-11
    GATase_3  29 fvplkdeslgedadlvilpGgkdtiqdlallresgldeaikeaae.aggpvlgiCGGlqmLGeeiedpegvegeageveglgl 110
                  v+ + e+l++ +d +i+pGg++t+ +  ++++ gl e ++++++ +++pv+g C+Gl++L++e    +++   ++ + glg+
  CCE26771.1  37 EVR-TAEELAR-CDGLIIPGGESTTISFVAAQS-GLLEPLRDYVKtQKRPVWGTCAGLILLSNEANATKKN--GQELIGGLGV 114
                 455.6677855.************999888777.*********986789***************8665544..3344445544 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.035
    GATase_3 167 ng.ekdGavkksedgnvlGtYlHglfdnr 194
                 n+ ++ G +   ++gn+lGt +H  + n+
  CCE26771.1 188 NTsNDAGDIIAVRQGNILGTSFHPELTND 216
                 334666666667899********776665 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.4e-07    0.0011      16     177 ..      25     217 ..      16     226 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.4e-07
                 HHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT......TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTT..............EEEE CS
      GATase  16 alvelgvkvevvpidasaeeilellknpdgilvsgGpgspg......vegkieaikearenkiPiLGICLGmQllaiefgr..............kvvk 94 
                 a+++l+++v+ +++     e+   l  +dg++++gG  +         +    +  ++ ++k P+ G C G+ ll +e  +                  
  CCE26771.1  25 AAAQLHLNVTTLEVR--TAEE---LARCDGLIIPGGESTTIsfvaaqSGLLEPLRDYVKTQKRPVWGTCAGLILLSNEANAtkkngqeligglgvR--- 115
                 344444445555544..3333...579*********888778877755666666777777***************999988666666555544331... PP

                 EECEEEEEEEEEEEETTT.........................CGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEES CS
      GATase  95 ekekehhggtmrlgddet.........................allyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQ 168
                   ++ h g +++  + +                            ++g++++v++       v++    +ag+  + +s+d + ++++++ +  + g+ 
  CCE26771.1 116 -VHRNHFGRQIESFEADMdlpflgegsspfpgvfirapvveeiLSASGSGSDVEVLAKLPGRVDR---MKAGVSQANTSNDAGDIIAVRQGN--ILGTS 208
                 .2233333333333322256666666777777777766666576677888888888888888888...999999999998877666665554..9**** PP

                 SBTTSTTST CS
      GATase 169 FHPEststp 177
                 FHPE t   
  CCE26771.1 209 FHPELTNDA 217
                 ****99765 PP

>> Peptidase_S51  Peptidase family S51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.5e-07   0.00037      56     140 ..      26     105 ..      15     124 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.5e-07
                    HHHTT-EEEE--TTTS-HHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHH.HTT-EEEEETHHHHTTSSB-GGGTTTS CS
  Peptidase_S51  56 leklglevdeLelskdpeeeieeklleadviyvgGGntfrLlkllketgldkllreav.qqglvyiGvSAGaivagesiettsysd 140
                     ++l+l+v+ Le+        ee l++ d++++ GG+   +  + ++ gl ++lr+ v  q +++ G+ AG i  +++ ++t+ ++
     CCE26771.1  26 AAQLHLNVTTLEVR-----TAEE-LARCDGLIIPGGESTTISFVAAQSGLLEPLRDYVkTQKRPVWGTCAGLILLSNEANATKKNG 105
                    44555555555544.....3333.666*******************************999****************999998443 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.8e-06     0.015      59     111 ..      44      98 ..      20     105 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.8e-06
                 CCG-SEEEE--BHHHH.HHHHTSHHHHHHHHHHH.HTT-EEEEETTTHHHHHHTT CS
   DJ-1_PfpI  59 aaeyDalvlpGGragp.erlrenekvvelvkefa.ekgklvaaICagpqlLaaag 111
                  a+ D l++pGG++     +++++ ++e +++ + +++++v   Cag +lL+++ 
  CCE26771.1  44 LARCDGLIIPGGESTTiSFVAAQSGLLEPLRDYVkTQKRPVWGTCAGLILLSNEA 98 
                 4678********9976245667779*******9978999********99998875 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.9e-05      0.18      35     118 ..      23      94 ..       5     101 .. 0.76
   2 ?   -2.0   0.0         1   2.6e+03     206     216 .]     202     212 ..     187     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.9e-05
  Peptidase_C26  35 kagglpvllpieedeedvkaildkldgllltGgqdvePslygeepsekeeeadpeRdalelaLiraalergvPilgiCrGlqll 118
                    +a +  + l +++ e  +++ l+++dgl+++Gg+  + s+ +++    ++  +p Rd ++        +++ P++g+C Gl ll
     CCE26771.1  23 RAAAAQLHLNVTTLEVRTAEELARCDGLIIPGGESTTISFVAAQ----SGLLEPLRDYVK--------TQKRPVWGTCAGLILL 94 
                    4556667777777777788899************8555555544....899999999875........5789999999998777 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1
  Peptidase_C26 206 afvlgvQwHPE 216
                      +lg  +HPE
     CCE26771.1 202 GNILGTSFHPE 212
                    56999*****9 PP

>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.015        37      37      65 ..      37      65 ..      12     126 .. 0.68
   2 ?    5.5   0.0     0.003       7.7     203     240 ..     188     225 ..     182     230 .] 0.88

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.015
    GATase_5 37 llegrvslddfqilalpGGfsygDelgsg 65
                 ++ +++l++  +l++pGG s++ +  ++
  CCE26771.1 37 EVRTAEELARCDGLIIPGGESTTISFVAA 65
                34566799999999999999986555444 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.003
    GATase_5 203 NgSpegiagitspdGRvlalmpHpervveavqksiipe 240
                 N S ++   i  ++G +l++  Hpe +++a  + ++ +
  CCE26771.1 188 NTSNDAGDIIAVRQGNILGTSFHPELTNDARIHAWWLK 225
                 7788888889999*********************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1776.26
//
Query:       CCE26772.1  [L=313]
Description: probable Snz-type pyridoxine vitamin B6 biosynthetic protein SNZ1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.3e-104  346.5   8.5   7.4e-104  346.0   8.5    1.2  1  SOR_SNZ       SOR/SNZ family
    1.4e-08   34.4   8.9    2.8e-07   30.1   0.7    2.7  3  ThiG          Thiazole biosynthesis protein ThiG
      0.001   18.2   0.9       0.42    9.7   0.0    2.5  2  Dus           Dihydrouridine synthase (Dus)
     0.0023   18.0   0.0      0.006   16.6   0.0    1.7  1  TetR_C_27     Tetracyclin repressor-like, C-terminal domain
     0.0073   15.5   0.1       0.17   11.1   0.0    2.4  2  IGPS          Indole-3-glycerol phosphate synthase
  ------ inclusion threshold ------
      0.013   15.0   1.2       0.59    9.5   0.1    2.8  2  His_biosynth  Histidine biosynthesis protein
      0.017   14.3   1.4       0.27   10.4   0.0    2.8  3  NanE          Putative N-acetylmannosamine-6-phosphate epimer
        1.6    8.1  11.2       0.59    9.5   3.0    2.3  2  NMO           Nitronate monooxygenase


Domain annotation for each model (and alignments):
>> SOR_SNZ  SOR/SNZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.0   8.5  3.3e-107  7.4e-104       2     207 .]      22     231 ..      21     231 .. 0.96

  Alignments for each domain:
  == domain 1  score: 346.0 bits;  conditional E-value: 3.3e-107
                 THHHHHHHHTTTSSEEEEESSHHHHHHHHHHT-SEEEE-SS-HHHHHHH-S------HHHHHHHHHH-SS-EEEEEETT-HHHHHHHHHTT-SEEEEET CS
     SOR_SNZ   2 lkvkaglaemlkgGvimdvvnaeqakiaeeaGavavmalervpadirkeggvarmsdpklikeikeavsipvmakvriGhfveaqilealgvdyiDese 100
                 ++vkagla+mlkgGvimdvv+aeqa+iaeeaGa+avmalervpadirk+ggvarmsdp +ikei++av+ipvmak+riGhfve+q+le+lgvdyiDese
  CCE26772.1  22 FTVKAGLAQMLKGGVIMDVVSAEQARIAEEAGACAVMALERVPADIRKDGGVARMSDPGMIKEIQAAVTIPVMAKARIGHFVECQVLESLGVDYIDESE 120
                 789************************************************************************************************ PP

                 TS--S-SS----GGG-SS-EEEEESSHHHHHHHHHHT-SEEEEES-TTS--THHHHHHHHHHHHHHHHHTTS-HHH....HHHHHHHHHGGGHHHHHHH CS
     SOR_SNZ 101 vltpadeeahidkkkfkvpfvcGarnlgealrriaeGaamirtkGeagtGdvveavrhvrkikeeirklkslseee....lvalakelkaplelvkeva 195
                 vltpad+e h++k+ f+vpfvcG+rnlgealrriaeGaamirtkGeagtGdvveavrh+++++++i+++k++  e     + ++a++l++++ l+ ++a
  CCE26772.1 121 VLTPADDESHVEKSVFSVPFVCGCRNLGEALRRIAEGAAMIRTKGEAGTGDVVEAVRHMKTVNSQIAAAKAALAEGgivrIREMARKLEVDTALLLQTA 219
                 ********************************************************************999844433333899**************** PP

                 HHTTS-S---T. CS
     SOR_SNZ 196 elgrlpvvnfaa 207
                 elgrlpvvnfaa
  CCE26772.1 220 ELGRLPVVNFAA 231
                 **********98 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   1.0   0.00057       1.3     136     201 ..      45     116 ..      23     137 .. 0.75
   2 ?   -0.9   0.0      0.38   8.4e+02      61      81 ..     133     153 ..     125     201 .. 0.75
   3 !   30.1   0.7   1.3e-10   2.8e-07     173     230 ..     220     280 ..     204     289 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00057
                 HHHHHHHTT-SEBEEB...SSSTTS----S...-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEE CS
        ThiG 136 larrleevGcaavmPl...aapiGsglGll...nkealkiiieeakvPvivDAGigspsdaaqamelGadav 201
                  ar  ee+G+ avm l    a i    G++   ++ ++k i + +++Pv+  A ig+  +      lG+d +
  CCE26772.1  45 QARIAEEAGACAVMALervPADIRKDGGVArmsDPGMIKEIQAAVTIPVMAKARIGHFVECQVLESLGVDYI 116
                 3566799*******97333588988877651116789*******************9998766666898866 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.38
                 CTSEEEEE-TT-SSHHHHHHH CS
        ThiG  61 kevtllPntaGaktaeeAvri 81 
                 k+v  +P   G+++  eA+r 
  CCE26772.1 133 KSVFSVPFVCGCRNLGEALRR 153
                 566677888888888888863 PP

  == domain 3  score: 30.1 bits;  conditional E-value: 1.3e-10
                 H-.SS-BEEES..---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHH CS
        ThiG 173 ea.kvPvivDA..GigspsdaaqamelGadavllntavaeakdpvamArafklaveaGrla 230
                 e+ ++Pv+  A  G+ +p daa  m+lG+d+v++ + + ++ dp++ A+a+ +a++  r a
  CCE26772.1 220 ELgRLPVVNFAagGVATPADAALMMQLGCDGVFVGSGIFKSGDPAKRAKAIVQATTHFRDA 280
                 44478888544349*************************************9998766655 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0013         3     112     133 ..      80     101 ..      63     112 .. 0.80
   2 !    9.7   0.0   0.00019      0.42     182     218 ..     224     259 ..     199     300 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0013
                 HHHHHHHCCSSS-EEEEEESES CS
         Dus 112 qivkavvkaveiPvtvkirigi 133
                  ++k+++ av iPv +k rig 
  CCE26772.1  80 GMIKEIQAAVTIPVMAKARIGH 101
                 478999**************96 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00019
                 -SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCC CS
         Dus 182 vsipviaNGdIkdaedaqaileetGadgvmigrgalg 218
                 ++++ +a G++ ++ da  +++  G+dgv +g g  +
  CCE26772.1 224 LPVVNFAAGGVATPADAALMMQL-GCDGVFVGSGIFK 259
                 56777899*********999998.********99753 PP

>> TetR_C_27  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.7e-06     0.006      61      95 ..     254     288 ..     250     295 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.7e-06
                 HCT-STT--HHHHHHHHHHHSGGGTSHHHHHHHGG CS
   TetR_C_27  61 aaGeFkaadpeaaaravfdatarfhhPalaaewsd 95 
                  +G Fk+ dp++ a+a+++at++f +  ++ae s+
  CCE26772.1 254 GSGIFKSGDPAKRAKAIVQATTHFRDAKVIAEAST 288
                 589*************************9999876 PP

>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.041        92      61      86 ..      33      58 ..      29     113 .. 0.88
   2 !   11.1   0.0   7.4e-05      0.17     190     252 ..     206     268 ..     178     270 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.041
                TEESBSS--HHHHHHHHTTT.-SEEE CS
        IGPS 61 kgliredfdpaeiAkkyeeagAsaiS 86
                kg + +d++ ae+A+  eeagA a+ 
  CCE26772.1 33 KGGVIMDVVSAEQARIAEEAGACAVM 58
                78889999*************99875 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.4e-05
                 TTTEE-CHHHHHHCHCC-TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHHHH CS
        IGPS 190 ktlevdlntteeLaklvpkdvllvaeSGiktredveklkeegvnafLvGeslmrqedvekair 252
                 ++levd     + a+l +  v+  a  G++t++d+  + + g +++ vG+ + ++ d +k  +
  CCE26772.1 206 RKLEVDTALLLQTAELGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPAKRAK 268
                 568888888888888878889999******************************999988766 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.028        62     165     214 ..      63     113 ..      31     118 .. 0.74
   2 ?    9.5   0.1   0.00027      0.59     179     225 ..     211     259 ..     169     263 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.028
                   EEEETTTTT.TSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTC CS
  His_biosynth 165 lltdidrdG.tlsGpdleltkelaeavkipviasGGvgsledlkelksegv 214
                   +  di +dG +    d  ++ke+++av+ipv+a   +g+  + + l+s gv
    CCE26772.1  63 VPADIRKDGgVARMSDPGMIKEIQAAVTIPVMAKARIGHFVECQVLESLGV 113
                   55688888724455678999***********99877777776666666665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00027
                   -HHHHHHHHHHHSSEEE..EESS--SHHHHHHHHHTTCSEEEESHHHHT CS
  His_biosynth 179 dleltkelaeavkipvi..asGGvgsledlkelksegvdavivgsalye 225
                   d  l+ + ae  ++pv+  a+GGv++++d + + + g+d+v vgs +++
    CCE26772.1 211 DTALLLQTAELGRLPVVnfAAGGVATPADAALMMQLGCDGVFVGSGIFK 259
                   4555555555555555333889999999988888899999888887665 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.054   1.2e+02      85     116 ..      82     116 ..      55     159 .. 0.76
   2 ?   -1.2   0.0      0.44   9.9e+02      99     153 ..     144     198 ..     129     224 .. 0.68
   3 ?   10.4   0.0   0.00012      0.27     146     179 ..     227     260 ..     202     273 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.054
                 HHHHHHH-...-EEEEE-SSHHHHHHHHHTT-SEE CS
        NanE  85 ikkikeky...qllmaDistleeglvakklGvdiv 116
                 ik+i+      +++ a i  + e+ v ++lGvd++
  CCE26772.1  82 IKEIQAAVtipVMAKARIGHFVECQVLESLGVDYI 116
                 44444443333444555666666666666666655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.44
                 -SSHHHHHHHHHTT-SEEE-TTTTSSTTS-.SS--HHHHHHHHHTT--EEEES-- CS
        NanE  99 istleeglvakklGvdivGttlsGytkeeekaepDfalvkalseaglkviaeGri 153
                 + +l e+l   + G+ ++ t     t++  +a   ++ v++  +a  + +aeG i
  CCE26772.1 144 CRNLGEALRRIAEGAAMIRTKGEAGTGDVVEAVRHMKTVNSQIAAAKAALAEGGI 198
                 5666666666666666666666666666666666666666666666666666655 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00012
                 -EEEES---SHHHHHHHHTT--SEEEE-HHHH-H CS
        NanE 146 kviaeGrintPekakkaieiGvdavvvGsaitrl 179
                    a G + tP+ a+ ++++G d v vGs i + 
  CCE26772.1 227 VNFAAGGVATPADAALMMQLGCDGVFVGSGIFKS 260
                 3468999**********************99765 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.2     0.019        42     139     198 ..      36      95 ..      13     101 .. 0.77
   2 ?    9.5   3.0   0.00026      0.59     167     226 ..     195     258 ..     163     288 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.019
         NMO 139 liptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavdiPviA 198
                 +i+ + s+++ar++e++Ga a+ +        + +  v+  +   ++++++ av iPv+A
  CCE26772.1  36 VIMDVVSAEQARIAEEAGACAVMALERVPADIRKDGGVARMSDPGMIKEIQAAVTIPVMA 95 
                 567788999999999999988877554444444434454456677999999999999999 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00026
         NMO 167 aGGhqGtpevgd..kglfaLvpqvldavdiPvi..AaGGiidrrgvaaaLalGAsgvqigtrfL 226
                 +GG    +e++   +  +aL+ q ++   +Pv+  AaGG+ +  + a ++ lG  gv +g+   
  CCE26772.1 195 EGGIVRIREMARklEVDTALLLQTAELGRLPVVnfAAGGVATPADAALMMQLGCDGVFVGSGIF 258
                 56666645555445566778888889999***877*************************9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2405.88
//
Query:       CCE26773.1  [L=395]
Description: related to polyadenylate-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-47  157.0   0.0    1.3e-16   60.1   0.0    3.2  3  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    3.9e-06   26.8   0.2     0.0022   18.0   0.1    3.1  3  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
     0.0001   22.3   0.1      0.051   13.7   0.0    2.9  3  RRM_7         RNA recognition motif
    0.00014   21.7   0.0      0.049   13.5   0.0    3.0  3  RRM_occluded  Occluded RNA-recognition motif
    0.00015   21.7   0.0     0.0017   18.4   0.0    2.4  3  RRM_3         RNA binding motif
  ------ inclusion threshold ------
      0.036   13.6   0.0       0.12   12.0   0.0    1.8  2  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   9.7e-14   2.9e-10       1      66 [.      31      96 ..      31      98 .. 0.94
   2 !   53.6   0.0   4.8e-18   1.4e-14       1      69 [.     124     194 ..     124     195 .. 0.97
   3 !   60.1   0.0   4.4e-20   1.3e-16       1      69 [.     263     326 ..     263     327 .. 0.97

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 9.7e-14
                EEEESETTTSSHHHHHHHHHT.TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1  1 lfVgnLppdvteeeLkelFsk.fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklgg 66
                l++g L p ++e+ +k +F    G+ +++k++rd+t  + g++fVeF s+e+A+kAl  lng+ +++
  CCE26773.1 31 LWMGELEPWMDENFIKGVFVSaSGETVNVKVIRDKTSGNAGYCFVEFSSPEAATKALG-LNGTSVPN 96
                6789999999999******9989999********************************.***99987 PP

  == domain 2  score: 53.6 bits;  conditional E-value: 4.8e-18
                 EEEESETTTSSHHHHHHHHHT.TSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk.fGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +fVg+L p+v+e  L  lF+  f + ks+k+++d   g+s+g++fV+F ++ d ++Al +++g   g+r++
  CCE26773.1 124 IFVGDLGPEVNEYVLVSLFQArFPSCKSAKIMTDaMSGQSRGYGFVRFSDENDQQRALVEMQGVYCGNRPM 194
                 8**************************************************************99999987 PP

  == domain 3  score: 60.1 bits;  conditional E-value: 4.4e-20
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +fVg+L+ +vte+eL+ +F++fG+i+ +k+++      kg++fV+F  + +Ae A+++++g+ +g++++
  CCE26773.1 263 VFVGGLSGYVTEDELRSFFQGFGEITYVKIPPG-----KGCGFVQFVHRHAAEMAINQMQGYPIGNSRV 326
                 8*******************************7.....****************************987 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.013        40      25      53 .]      54      87 ..      43      87 .. 0.81
   2 ?    0.6   0.0       0.2   5.9e+02      34      53 .]     162     181 ..     144     181 .. 0.85
   3 !   18.0   0.1   7.2e-07    0.0022      14      52 ..     274     312 ..     260     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.013
  Nup35_RRM_2 25 GeIvkhyvp.....kevsvmyvkfesekdaekAL 53
                 Ge+v+  v      ++  + +v+f s+ +a kAL
   CCE26773.1 54 GETVNVKVIrdktsGNAGYCFVEFSSPEAATKAL 87
                 888886666677776677999************8 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.2
  Nup35_RRM_2  34 kevsvmyvkfesekdaekAL 53 
                  +++ + +v+f +e d ++AL
   CCE26773.1 162 QSRGYGFVRFSDENDQQRAL 181
                  5677889***********98 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 7.2e-07
  Nup35_RRM_2  14 ielVlehFasfGeIvkhyvpkevsvmyvkfesekdaekA 52 
                  +++ + +F+ fGeI+   +p+++   +v+f  + +ae+A
   CCE26773.1 274 EDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMA 312
                  345677********************************9 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.95   2.8e+03      45      63 ..      65      83 ..      51     103 .. 0.68
   2 !    5.1   0.0     0.008        24       4      88 ..     124     203 ..     122     209 .. 0.65
   3 !   13.7   0.0   1.7e-05     0.051       3      29 ..     262     288 ..     260     319 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.95
       RRM_7 45 nskaakgyvflvfedeksv 63
                +++ + gy f+ f++ ++ 
  CCE26773.1 65 KTSGNAGYCFVEFSSPEAA 83
                3444567888777764443 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.008
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvk.aLleacteeeeelylklssrrlks 88 
                 +FvG l ++++e  l++ f++       +P  +  k  +   s + +gy f+ f+de+  + aL+e    + ++  +++s+++ k+
  CCE26773.1 124 IFVGDLGPEVNEYVLVSLFQA------RFPSCKSAKIMTDAMSGQSRGYGFVRFSDENDQQrALVEMQGVYCGNRPMRISTATPKN 203
                 789999999998888888875......45655444444444455678*******99987651555555555566666666665555 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 1.7e-05
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvl 29 
                  vFvGGl   +te+el + f+ fg+++
  CCE26773.1 262 TVFVGGLSGYVTEDELRSFFQGFGEIT 288
                 69**********************975 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.036   1.1e+02      41      65 ..      73      96 ..      51     101 .. 0.86
   2 ?    1.4   0.0       0.1     3e+02      42      73 ..     168     199 ..     155     201 .. 0.91
   3 !   13.5   0.0   1.6e-05     0.049       3      70 ..     262     328 ..     260     332 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.036
  RRM_occluded 41 AivefkdekiagkasLaLdgsefeg 65
                  ++vef++ ++a ka L L+g++  +
    CCE26773.1 73 CFVEFSSPEAATKA-LGLNGTSVPN 96
                  789**999988886.9999998765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.1
  RRM_occluded  42 ivefkdekiagkasLaLdgsefegkklrcGtv 73 
                   +v f+de++  +a+ +++g    ++ +r++t 
    CCE26773.1 168 FVRFSDENDQQRALVEMQGVYCGNRPMRISTA 199
                   699*****************999999999885 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 1.6e-05
  RRM_occluded   3 tisllplsDtvnkariralveekegeikkivLvpdheGAivefkdekiagkasLaLdgsefegkklrc 70 
                   t+ + +ls  v+++++r++++   gei+ + + p +++ +v+f ++++a  a+ +++g+ + + ++r 
    CCE26773.1 262 TVFVGGLSGYVTEDELRSFFQGF-GEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQGYPIGNSRVRL 328
                   5566679999*************.**********************999999999***9999988775 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   3.2e+03      39      54 ..      72      87 ..      43      94 .. 0.70
   2 ?   -0.6   0.0      0.45   1.3e+03      40      55 ..     167     182 ..     156     189 .. 0.78
   3 !   18.4   0.0   5.6e-07    0.0017       4      58 ..     263     317 ..     261     329 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
                EEEEEESSHHHHHHHH CS
       RRM_3 39 egevrFkedeeakkal 54
                 + v F ++e+a kal
  CCE26773.1 72 YCFVEFSSPEAATKAL 87
                3567888888888876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.45
                 EEEEESSHHHHHHHHH CS
       RRM_3  40 gevrFkedeeakkale 55 
                 g vrF ++++ ++al 
  CCE26773.1 167 GFVRFSDENDQQRALV 182
                 679****999998875 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 5.6e-07
                 EEEEE-SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHHHHHH CS
       RRM_3   4 lklsGlnkelsredikellsklgevayvdyekgdkegevrFkedeeakkalekat 58 
                 +++ Gl+  ++ ++++ +++ +ge+ yv    g+  g v+F + ++a+ a++++ 
  CCE26773.1 263 VFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 317
                 678899999****************************************999865 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.1   3.3e+03      70      86 ..     170     186 ..     162     200 .. 0.58
   2 ?   12.0   0.0     4e-05      0.12      20     103 ..     254     335 ..     240     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.1
       RRM_5  70 qmgdasaveravqHLnn 86 
                   +d+ + +ra+  +++
  CCE26773.1 170 RFSDENDQQRALVEMQG 186
                 55555555555544444 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4e-05
       RRM_5  20 aagvaegsVllVyglepdkvnldklFnlfclYgnvervkflktkketalvqmgdasaveravqHLnnaklfgkrlevalSKqqa 103
                 +   ++++ ++V gl    v+ d+l  +f  +g++  vk+    k+  +vq     a+e a++ +++ ++ ++r+++   + q+
  CCE26773.1 254 QFTDPNNTTVFVGGLS-GYVTEDELRSFFQGFGEITYVKIPP-GKGCGFVQFVHRHAAEMAINQMQGYPIGNSRVRLSWGRSQN 335
                 4456778999999996.689*******************965.579************************88899887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2977.17
//
Query:       CCE26774.1  [L=1827]
Description: related to ECM29 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-148  495.1   0.8   1.1e-147  492.8   0.2    2.4  2  Ecm29     Proteasome stabiliser
      2e-06   27.5   6.3       0.72   10.3   0.1    7.6  7  HEAT      HEAT repeat
    1.4e-05   25.4   9.3        9.2    6.9   0.0    8.2  9  HEAT_EZ   HEAT-like repeat
  ------ inclusion threshold ------
      0.014   14.6   5.5        9.8    5.2   0.0    5.5  5  IFRD      Interferon-related developmental regulator (IFRD)
       0.44    9.6   4.2        8.7    5.3   0.0    4.2  5  MMS19_C   RNAPII transcription regulator C-terminal


Domain annotation for each model (and alignments):
>> Ecm29  Proteasome stabiliser
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  492.8   0.2    3e-151  1.1e-147       1     497 []      15     506 ..      15     506 .. 0.97
   2 ?   -1.2   0.0      0.16   5.9e+02     242     286 ..    1394    1441 ..    1348    1469 .. 0.64

  Alignments for each domain:
  == domain 1  score: 492.8 bits;  conditional E-value: 3e-151
       Ecm29   1 vekvelRl.alAdtdekLeklLskfLpplLlklasphasvRkkVieilqhinkriksrpsikLPveaLlkqyketeasslvrnfsllyiekgidRlsae 98 
                 ve ve+++ ++A++++kL++lL+++L+pl+lk+as+hasvR+ +i+il +++++i+ +p+i LPv+aLl+qyk++ +s ++++++l ++ +++dRl+ +
  CCE26774.1  15 VESVEFKIlGVANKEDKLHQLLQRYLAPLILKAASEHASVRARIIQILARLKTFIQ-PPEIILPVKALLQQYKSN-DSLIIKQLDLSFVMHSLDRLDID 111
                 799*****************************************************.*****************8.*********************** PP

       Ecm29  99 erkellpkllkgis.kkpsqhqarlfnlllklLgklklpprgskedealkellglsdkpedakflleffldfllls.pskssesstscpGlsaaevkfl 195
                 ++++l++ +l g++ ++ ++++a +f+++l+lL+++++pprgs+edea++++lgl+d ++da++l++ ++ fl l+ p+  s   +++p+ls++e++++
  CCE26774.1 112 DKRDLISIALAGFAkDEGQPRAALMFHIILRLLLDVRIPPRGSTEDEAFRSSLGLTD-DADAQYLARNLGIFLRLRmPAVISPLGQANPALSSTELAMF 209
                 **************8889999***********************************6.********************99998888************* PP

       Ecm29 196 tkkakvsalkkeeleetKlailkflasgaftdeerevlpallvasadsdssvsdraeelLKrlsvdledealvdkLfslflgskeeskispaspalrlk 294
                   +++  ++ +++++e+Kl+i++flasgaf+deer +lpal++a +  d++vs+ aee+LKr++v+lede+l+++Lf ++           +++++r++
  CCE26774.1 210 PVDSPEIDKIFNRITELKLKIITFLASGAFKDEER-FLPALYAA-SGVDNRVSSTAEEILKRSTVSLEDESLIKSLFLAHSQ---------LPAPYRAR 297
                 *****556799***********************8.********.7778********************************9.........******** PP

       Ecm29 295 IlslLskSvlaaansfpaniqvife.sly.......gsglessKLrslllqFinwvarhgsskelkkiapvllsglrklidsqgwpepeknssaseelr 385
                 Il +Ls+S+la++  +++ni+ +++ +++       +s+le++KL+++l+qF+ wva++g+sk   +i++ l++ +r++i+ qgwp p+++s+++  lr
  CCE26774.1 298 ILAVLSRSTLATT--MSDNIMAVVNlDFLpqssmqpASALERTKLHKSLFQFLSWVAQIGPSKANFTIGTPLIKAMRSYIEGQGWPAPAQTSKDDDALR 394
                 *********9999..9********88888*******999**********************99988**********************8889******* PP

       Ecm29 386 slaYealGlLakrapslvredlsliefLFdsLeeee.sevrvsIqeALssllsafkeleseaskekLeellleyleadeeesaersvryvavkyanalf 483
                 s+aYe++G+ a++a++ ++e+++l  +LF+sL+e++ +e +v+I++ALssl++a++ +    ++++L+ +ll+y+  ++e+ a+rs+r++avk+an+++
  CCE26774.1 395 SRAYETIGMVARSANMPFEERFDLGAWLFRSLSEDNtAEAVVNIDGALSSLTAAIPAN-IGGENDELKRMLLSYMALSDEPPAVRSTRHAAVKWANQCL 492
                 ************************************88******************88.999************************************* PP

       Ecm29 484 pfsdveaRyililA 497
                 pfsdv++R+i+ilA
  CCE26774.1 493 PFSDVVGRWIDILA 506
                 *************8 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.16
       Ecm29  242 dsdssvsd...raeelLKrlsvdledealvdkLfslflgskeeskisp 286 
                  d++++vs+   ra  ++ r ++d  +  + +k +++++  + es++++
  CCE26774.1 1394 DRNDEVSQayaRAAAYMIRAAPDASKVRFCEKFVDMYFQAEDESRRQK 1441
                  344444331115666666777777777777777777776544444443 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.12   4.3e+02       3      27 ..      42      65 ..      40      68 .. 0.87
   2 !    6.9   0.0    0.0025       8.9       5      29 ..     692     716 ..     690     717 .. 0.89
   3 ?   -2.5   0.0       2.5     9e+03      10      27 ..     784     802 ..     782     803 .. 0.74
   4 ?   -1.2   0.0      0.96   3.5e+03       5      24 ..     976     995 ..     974     999 .. 0.88
   5 !   10.3   0.1    0.0002      0.72       8      30 ..    1148    1173 ..    1143    1174 .. 0.80
   6 ?    3.0   0.0     0.044   1.6e+02       7      28 ..    1192    1213 ..    1189    1216 .. 0.82
   7 ?   -1.1   0.0      0.92   3.3e+03       9      30 ..    1431    1452 ..    1424    1453 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.12
                HHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT  3 PlllkllsDpspeVReaAakaLgal 27
                Pl+lk+  +++++VR+  ++ L++l
  CCE26774.1 42 PLILKA-ASEHASVRARIIQILARL 65
                99***7.8********999999876 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0025
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 ll l+++++ e+R+ Aaka+g l+ 
  CCE26774.1 692 LLPLIKSNNKEIRSLAAKAFGILVA 716
                 788999***************9875 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.5
                 T-SSHH.HHHHHHHHHHHH CS
        HEAT  10 sDpspe.VReaAakaLgal 27 
                 +D  p    eaA++++ +l
  CCE26774.1 784 KDGVPAsLKEAALETFSQL 802
                 5555554689******998 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.96
                 HHHHHT-SSHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaL 24 
                 +++lls  +  V e+A + L
  CCE26774.1 976 FMRLLSARDELVQETASRGL 995
                 8899************9987 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 0.0002
                  HHT-...SSHHHHHHHHHHHHHHHHC CS
        HEAT    8 llsD...pspeVReaAakaLgalaev 30  
                  ll++   ++++VRea++ a+ +l+++
  CCE26774.1 1148 LLKSilgKEWRVREASCAAISDLIQG 1173
                  555555599*************9986 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.044
                  HHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    7 kllsDpspeVReaAakaLgala 28  
                  k l D   +VReaA+k + +l+
  CCE26774.1 1192 KVLDDVKGSVREAALKLCMTLS 1213
                  567788889*******999886 PP

  == domain 7  score: -1.1 bits;  conditional E-value: 0.92
                  HT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    9 lsDpspeVReaAakaLgalaev 30  
                   + ++ + R+ +a  ++ +a+v
  CCE26774.1 1431 FQAEDESRRQKVADVIVSMAKV 1452
                  488999************9997 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.048   1.7e+02      19      55 .]      29      65 ..      22      65 .. 0.79
   2 ?   -3.9   0.0         5   1.8e+04      36      46 ..     469     479 ..     459     484 .. 0.79
   3 !    6.9   0.0    0.0026       9.2      24      54 ..     683     713 ..     664     714 .. 0.88
   4 ?   -2.7   0.0       2.6   9.3e+03      36      55 .]     782     802 ..     781     802 .. 0.79
   5 ?   -3.2   0.0       3.6   1.3e+04      34      55 .]     823     844 ..     819     844 .. 0.68
   6 ?    1.4   0.0      0.14   4.9e+02      22      53 ..     965     996 ..     945     998 .. 0.73
   7 ?    3.9   0.1     0.022        77       1      19 [.    1157    1175 ..    1157    1209 .. 0.79
   8 !    5.6   0.0    0.0067        24      13      38 ..    1263    1288 ..    1252    1294 .. 0.83
   9 ?    1.2   0.0      0.16   5.6e+02       9      48 ..    1364    1404 ..    1357    1408 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.048
     HEAT_EZ 19 pellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55
                 + l++l+++ l++L+    +++++VRa  +  L++l
  CCE26774.1 29 EDKLHQLLQRYLAPLILKAASEHASVRARIIQILARL 65
                456888888899999988889999****999988876 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 5
     HEAT_EZ  36 lLnddsdeVRa 46 
                 +L+d++++VR 
  CCE26774.1 469 ALSDEPPAVRS 479
                 47888889985 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0026
     HEAT_EZ  24 plvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 ++++++   Ll+l ++ ++e+R  Aa a+g 
  CCE26774.1 683 GYLTDVSTNLLPLIKSNNKEIRSLAAKAFGI 713
                 577888889*******************995 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2.6
     HEAT_EZ  36 lLnddsd.eVRaaAagaLgnl 55 
                 lL+d  + + ++aA+ ++++l
  CCE26774.1 782 LLKDGVPaSLKEAALETFSQL 802
                 56776776889*****99997 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 3.6
     HEAT_EZ  34 lalLnddsdeVRaaAagaLgnl 55 
                 ++ L +d ++  + A+gaLg l
  CCE26774.1 823 INKLASDAKKANERAIGALGSL 844
                 4555556667778899999976 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.14
     HEAT_EZ  22 lqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 +q+ + e+  a+++lL+  + +V+++A + L+
  CCE26774.1 965 VQDRLREAQTAFMRLLSARDELVQETASRGLS 996
                 44455566667777777777799****99887 PP

  == domain 7  score: 3.9 bits;  conditional E-value: 0.022
     HEAT_EZ    1 wrvRraAawaLGrlaggep 19  
                  wrvR+a ++a++ l +g+p
  CCE26774.1 1157 WRVREASCAAISDLIQGRP 1175
                  9**********87555554 PP

  == domain 8  score: 5.6 bits;  conditional E-value: 0.0067
     HEAT_EZ   13 rlaggepellqplvpeilpaLlalLn 38  
                   +a +++  l+p+++ ++p+Ll lL+
  CCE26774.1 1263 KIAKHGGKVLKPFISSMIPQLLGLLS 1288
                  488999****************9995 PP

  == domain 9  score: 1.2 bits;  conditional E-value: 0.16
     HEAT_EZ    9 waLGrlaggepellqplvpeilpaLlalLnddsdeV.RaaA 48  
                  +++ +la   + ++q    ++l  L +  +d +deV +a+A
  CCE26774.1 1364 RVITTLATSHSSDIQSIAGKLLHILEKQTMDRNDEVsQAYA 1404
                  566668888889999999999999************65554 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0027       9.8     126     203 ..     689     760 ..     681     802 .. 0.73
   2 ?    0.7   0.0     0.062   2.2e+02     192     246 ..     833     892 ..     818     895 .. 0.82
   3 ?    3.2   0.1     0.011        38     205     254 ..     954    1003 ..     932    1027 .. 0.84
   4 ?    0.5   0.1     0.071   2.5e+02      31     141 ..    1136    1249 ..    1117    1318 .. 0.65
   5 ?    0.6   0.1     0.068   2.4e+02     120     189 ..    1337    1402 ..    1330    1416 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0027
        IFRD 126 kpvLkriikdssvslsakaaaieaLglltfvggadeeeieelmeflleifssdgqsieaadsaskalvtaalsawglL 203
                 ++ L  +ik+++   ++++ a++a+g+l+   +++ e++ +  ++l+ +f+++   i a+ +a+      al a g L
  CCE26774.1 689 STNLLPLIKSNN--KEIRSLAAKAFGILVAHPSNSSESVGNWITTLMALFANAESAIGAEANAA----EGALLAFGHL 760
                 444555555555..77888888888888888888888888888888888877777777666655....4555555555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.062
        IFRD 192 lvtaalsawglLltllpssklnkkleedl.....eealealvelLdssdvevriAAGeai 246
                     a+ a+g L+  l++ +++++  ++       e+l++l++l + + vev+++ G ai
  CCE26774.1 833 ANERAIGALGSLAMGLEQDTVADSTTTESfpgslGEILKHLFSLHEIKRVEVQFTVGDAI 892
                 456799999*******8888888888876888886789999999999**********999 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.011
        IFRD  205 tllpssklnkkleedleealealvelLdssdvevriAAGeaiALlfElsr 254 
                  + ++ ++  ++++++l ea  a++ lL+  d  v+ +A++ + L+++ ++
  CCE26774.1  954 SMVQFGSHLSQVQDRLREAQTAFMRLLSARDELVQETASRGLSLVYDRGD 1003
                  55555555566667777789**************************9875 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.071
        IFRD   31 eaqedweekLkqaidelteksaktReaaLesllellsshyleefveerlatlldalekslkkgkseEqalAlkalall....citlgagdeseeile 123 
                  + +  +++  ++ ++++  k    Rea+ +++ +l++ +  ++  e+ + ++ ++ +k l   k++ + +Alk++  l    + +l++g +      
  CCE26774.1 1136 TIEAHFDAIVQDLLKSILGKEWRVREASCAAISDLIQGRPFPQ-YEKYYRDIWTNALKVLDDVKGSVREAALKLCMTLsntlVRQLEEGNHVSAAQA 1231
                  4444444444555555558888888888888888888877777.46777788888888887777777777777766652222334555555555555 PP

        IFRD  124 elkpvLkriikdssvsls 141 
                   +k+ L  +++d+ v++s
  CCE26774.1 1232 MMKEALPFLLSDKGVESS 1249
                  555555555555554444 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.068
        IFRD  120 eileelkpvLkriikdssvslsakaaaieaLglltfvggadeeeieelmeflleifssdgqsieaadsas 189 
                  ++++e+ p ++++ik++   + +k  + + +   t +++++ ++i ++   ll+i+++++   ++++s++
  CCE26774.1 1337 DVMTEFAPKFESTIKTAI-GMPTKIGCSRVI---TTLATSHSSDIQSIAGKLLHILEKQTMDRNDEVSQA 1402
                  678888889999999988.899998887766...666677777799999999999999998888877776 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0024       8.7     278     308 ..     686     717 ..     683     734 .. 0.85
   2 ?   -3.8   0.0       1.4   5.2e+03     280     305 ..     972     998 ..     962    1031 .. 0.61
   3 ?    0.3   0.0     0.081   2.9e+02      68     144 ..    1167    1233 ..    1118    1238 .. 0.61
   4 ?   -1.2   0.0      0.24   8.5e+02     383     422 ..    1246    1285 ..    1227    1286 .. 0.75
   5 ?    1.1   0.1     0.047   1.7e+02     109     171 ..    1392    1464 ..    1362    1486 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0024
     MMS19_C 278 telldkLlelLs.edaelgqlvakafgvlvsd 308
                 t++ ++Ll l++ +++e+++l+akafg+lv+ 
  CCE26774.1 686 TDVSTNLLPLIKsNNKEIRSLAAKAFGILVAH 717
                 688999*****99*****************97 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.4
     MMS19_C 280 lldkLlelLs.edaelgqlvakafgvl 305
                   + ++ lLs  d+ ++++++++++++
  CCE26774.1 972 AQTAFMRLLSaRDELVQETASRGLSLV 998
                 455666666644555555555555443 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.081
     MMS19_C   68 llkllekkqtdlekeellnsyydrivprlltlvvsaastsssiltddrllevlgriinlivrslssskqqevleevv 144 
                  + +l++ +       +++++yy +i  + l++ ++    + +++  +++l+++  + n++vr+l+  ++ + +++++
  CCE26774.1 1167 ISDLIQGRP-----FPQYEKYYRDIWTNALKV-LD----DVKGSVREAALKLCMTLSNTLVRQLEEGNHVSAAQAMM 1233
                  333333333.....244566666666666666.33....33488888999999999999999998888888887776 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.24
     MMS19_C  383 LdlpdaevkastLetlksileespslvsehlssLvprLLk 422 
                   + + ++v++ +  t+  i+++  +++++++ss +p+LL 
  CCE26774.1 1246 VESSVQDVQLFATITVMKIAKHGGKVLKPFISSMIPQLLG 1285
                  555556666666667888888899**************95 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.047
     MMS19_C  109 siltddrllevlgriinlivrslssskqqevleevvalfltgdask..........kfeplsesasesqkqli 171 
                  +  ++d++ ++ +r    ++r  + + + +++e++v+++++ ++++          +++ +s+++ + q++++
  CCE26774.1 1392 TMDRNDEVSQAYARAAAYMIRAAPDASKVRFCEKFVDMYFQAEDESrrqkvadvivSMAKVSPDHFTAQETIL 1464
                  467899999999999999*******************999998888777777777733333334445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1827 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.45
# Mc/sec: 12166.76
//
Query:       CCE26775.1  [L=548]
Description: uncharacterized protein CPUR_00244 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-16   59.6   0.0    5.1e-16   58.6   0.0    1.5  1  Thioredoxin_7   Thioredoxin-like
    9.4e-12   44.6   0.0    1.9e-11   43.6   0.0    1.5  1  UBA_4           UBA-like domain
      5e-07   29.8   0.0    1.4e-06   28.4   0.0    1.8  1  UBX             UBX domain
  ------ inclusion threshold ------
      0.015   15.3   0.1      0.023   14.6   0.1    1.4  1  Thioredox_DsbH  Protein of unknown function, DUF255


Domain annotation for each model (and alignments):
>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   1.1e-19   5.1e-16       5      83 .]     235     322 ..     230     322 .. 0.88

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 1.1e-19
                    SHHHHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG......-TT-..--....SSEEEEE-T CS
  Thioredoxin_7   5 dldealakaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdani.....lelde..qg....vPvvafldp 83 
                    ++dea+   +e++k++lv++++   f Cqal+rd ++d  v++++ae+f++l++d +  da+      +   +  +     +P+v ++dp
     CCE26775.1 235 SWDEARTLGKEDKKWILVNLQDMSDFNCQALNRDIWKDTAVRELVAENFIFLQYDKDYPDAEAyiafyFP--NrtHEnpdnYPHVSIVDP 322
                    4899999******************************************************998775533..233224566********9 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   4.3e-15   1.9e-11       1      41 [.       2      42 ..       2      43 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 4.3e-15
       UBA_4  1 deliaqFqaiTGadeekArqlLeannWdLerAislyFdsge 41
                de+i++F+aiTGa++e+ r + + +n+d erA+ lyF+++e
  CCE26775.1  2 DEAISTFVAITGATPEVGRGFIQITNGDFERAVGLYFENPE 42
                8*************************************986 PP

>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   3.2e-10   1.4e-06       4      80 ..     467     544 ..     464     545 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 3.2e-10
                 SSEEEEEEEETTSTEEEEEEESSSBHHHHHHHHHHHCCCCCTS..EEEEET..TTTEEGGCCCCSBCCCCTTTSCEEEEEE CS
         UBX   4 edatrlqiRlpdGsrlvrrFkksdtlesvyeyVdsklfekeep..FqLlts..fPrreltksdkktLsdlgllpnstlvle 80 
                  ++tr+q R p G r  rrF+ +d+++ +ye+ + +  e ++   F+L ++    +++++++d +t+++  +l+++t+++e
  CCE26775.1 467 ATTTRIQFRHPTG-RVIRRFNLQDPIRRIYEWLKAEPLEGKDGvpFELKKMpqGQQDLIASLD-QTIEEC-GLKQGTVMIE 544
                 579**********.67799*****************999997666***555322346777887.******.9999999987 PP

>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   5.2e-06     0.023      28      94 ..     238     303 ..     231     390 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.2e-06
  Thioredox_DsbH  28 ealekakeedkpillsiGysachWChvmekesfedeevaallnesfvsvkvDreerPdldkiymeav 94 
                     ea +  ke++k il+++  +++  C+ ++++ ++d++v +l+ e+f+ ++ D++  Pd +++   + 
      CCE26775.1 238 EARTLGKEDKKWILVNLQDMSDFNCQALNRDIWKDTAVRELVAENFIFLQYDKD-YPDAEAYIAFYF 303
                     666778899999****************************************97.699876554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3982.85
//
Query:       CCE26776.1  [L=713]
Description: related to severin kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-68  228.8   0.0    1.1e-67  228.1   0.0    1.3  1  Pkinase         Protein kinase domain
      5e-48  163.6   0.0    7.7e-48  163.0   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
      0.001   18.0   0.0     0.0017   17.2   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.072   12.4   0.0       0.37   10.1   0.0    2.0  2  Kinase-like     Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.1   0.0   2.5e-71   1.1e-67       1     264 []      21     271 ..      21     271 .. 0.94

  Alignments for each domain:
  == domain 1  score: 228.1 bits;  conditional E-value: 2.5e-71
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 y+k+  +G GsfGkVyk+v+k+tg+ vA+K i+ e+a+++ e ++++Ei+il +l++p++ ++y+++ +  el++v+e++ gg+ adl++  g +se+ 
  CCE26776.1  21 YTKEYCIGGGSFGKVYKGVDKRTGEAVAIKLIDIENADDEVE-DIIQEIAILSELQSPYVTKYYGSYAKGAELWIVMEFCAGGSCADLMK-PGLISEDY 117
                 667778********************************9885.9*********************************************7.699***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                 +  i++++l gl+ylH+ + +HrD+K +NiL+   g++K++DFG++ +l+ + + +++fvgt+ ++APEv+k+++y++k+D+WslG++ +el  g+ppf
  CCE26776.1 118 IAIIMRELLLGLDYLHADKKLHRDVKAANILLGAGGQVKLADFGVSGQLSATMTkKNTFVGTPFWMAPEVIKQSGYDHKADIWSLGITALELAKGEPPF 216
                 **************************************************988779******************************************* PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 +          +++ ++ ++ i  +++   + + ++ + +kd+++ +l++dp++R++a++ll+hp++
  CCE26776.1 217 A----------DIHPMKVLFLI--PKNPPPRLEGNFTKAFKDFVEICLQRDPRERPSARDLLRHPFI 271
                 *..........67776556665..445667777899*****************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.0   0.0   1.7e-51   7.7e-48       6     257 ..      26     267 ..      21     268 .. 0.95

  Alignments for each domain:
  == domain 1  score: 163.0 bits;  conditional E-value: 1.7e-51
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHH CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlk 103
                   +G G+fGkV++g  k    ++ + Va+K ++ e+ ++e e++++e++i+++l+ p + k++g + k+ +l+iv+e+++gG+  + ++      ++ +
   CCE26776.1  26 CIGGGSFGKVYKGVDK----RTGEAVAIKLIDIENADDEVEDIIQEIAILSELQSPYVTKYYGSYAKGAELWIVMEFCAGGSCADLMKPG---LISED 116
                  69***********999....8999********9999999**********************************************99886...77777 PP

                  HHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 104 dllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftl 201
                   +  ++ ++  G++yL++ k +Hrd+ a N+Ll  + +vk++DfG++ ++  + +++kk++      WmapE++k++ + +k+D+Ws G++  E+++ 
   CCE26776.1 117 YIAIIMRELLLGLDYLHADKKLHRDVKAANILLGAGGQVKLADFGVSGQL--SATMTKKNTFVGTPFWMAPEVIKQSGYDHKADIWSLGITALELAK- 211
                  7888899*******************************************..677778888888999****************************99. PP

                  SSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 202 gespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  ge p++++++++vl  + ++   +   + +++++++++ c+++dp+eRp+ ++l++
   CCE26776.1 212 GEPPFADIHPMKVLFLIPKNPPPRLEGNFTKAFKDFVEICLQRDPRERPSARDLLR 267
                  **************************************************999865 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.9e-07    0.0017     315     392 ..     125     196 ..     119     202 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.9e-07
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgee..Hs 392
                      + g+  L+   + LHrD+ + Nil+      ++ +  L+D+ +  +ls   +  ++++ +GT+ +ma ev+k++   H+
      CCE26776.1 125 LLLGLDYLH-ADKKLHRDVKAANILLG-----AGGQVKLADFGVSGQLSA--TMTKKNTFVGTPFWMAPEVIKQSGydHK 196
                     566788899.7888*************.....89999************6..4444579**************7553465 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.24   1.1e+03      18      55 ..      25      60 ..      17      81 .. 0.75
   2 ?   10.1   0.0   8.2e-05      0.37     159     254 ..     131     220 ..     115     224 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.24
  Kinase-like 18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkd 55
                   ++ g +++v++  d+ tge +a+k   +  e++  +
   CCE26776.1 25 YCIGGGSFGKVYKGVDKRTGEAVAIKLIDI--ENADDE 60
                 568889999************999986554..444444 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 8.2e-05
  Kinase-like 159 nLqakglvhgkftvdnllldekgglmlggft...aLvragtkvvlseve.kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltl 252
                  +L+a   +h ++++ n+ll   g+++l +f+   +L    tk     v    +  pE++ +           + hk d W lG++++ ++  + P+  
   CCE26776.1 131 YLHADKKLHRDVKAANILLGAGGQVKLADFGvsgQLSATMTKKN-TFVGtPFWMAPEVIKQ---------SGYDHKADIWSLGITALELAKGEPPFAD 218
                  78999999*********************972123443333333.2222122345555555.........56899************99988888876 PP

  Kinase-like 253 at 254
                  + 
   CCE26776.1 219 IH 220
                  65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 4812.33
//
Query:       CCE26777.1  [L=378]
Description: probable isocitrate dehydrogenase [NAD] subunit 1, mitochondrial precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-81  274.7   0.0    1.4e-81  274.4   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.4   0.0   7.7e-86   1.4e-81       1     348 []      44     371 ..      44     374 .. 0.93

  Alignments for each domain:
  == domain 1  score: 274.4 bits;  conditional E-value: 7.7e-86
                 EEEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHS..SSS-HHHHHHHHHSSEEEEEE---CS.SSSSSHHHHHHHHHHHTTEEE CS
      Iso_dh   1 kiallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetg..eplpeetleaikeadvvllgavgtpk.ekevrpengLlaLrkeldlfa 96 
                 +++l++gdgiG ev e+++ ++ka +      +++e+++v+g   d  g  e    e+++++k+++  l+g + tp  ++++++ n  +a+r+eld++a
  CCE26777.1  44 TVTLIPGDGIGAEVAESVKTIFKADN--V--PIDWEQIEVSGMI-DGAGrtEDAFRESVASLKRNKLGLKGILHTPIsRSGHQSFN--VAMRQELDIYA 135
                 589********************988..5..59*******9864.44443578889*********************8999*****..*********** PP

                 EEEEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHHHH. CS
      Iso_dh  97 nlrpvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlksse. 194
                  +  +k +   ++++  k     +vdl+i+Re+t+g Y+g e++         v+ ++k ++++ +eria++af  Al++g++kvt+++Kan++k ++ 
  CCE26777.1 136 SISLIKNI--PGYETRHK-----NVDLCIIRENTEGEYSGLEHQSVPG-----VVESLKIITRAKSERIAKFAFSFALANGRSKVTCIHKANIMKLADg 222
                 **999999..56666666.....59*********************97.....899******************************************* PP

                 HHHHHHHHHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEETSS-EEEEE.SS---CCCTTSS-S-THH CS
      Iso_dh 195 lwrkiveevaeeeypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslgekkvaifEa.vHGsapdiagkdkaNpia 292
                 l+r+++++va+ eyp +e+++++vD+a mq+v +p+qfdV+v++Nl+G ilS   aalvG+ G++p+ ++g + va+fE+ +     di gkd+aNp+a
  CCE26777.1 223 LFRNTFHNVAK-EYPTLEVNDMIVDNASMQAVSRPQQFDVMVMPNLYGGILSNIGAALVGGPGIVPGCNMG-RDVAVFEPgCRHVGLDIKGKDQANPTA 319
                 ***********.***********************************************************.68*****95455667************ PP

                 HHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHH.TSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 293 vilSaalmLryslgleeaAdkiekAvekvlea.givTkDlageaakevstsefgdav 348
                  ilS +++Lr+ lgl+++A++i kA+ +v+++ +++T+D++g +    +t+ef++a+
  CCE26777.1 320 LILSGSMLLRH-LGLDDHANRISKAIYGVIAEgKVRTRDMGGVS----TTHEFTKAI 371
                 ***********.********************899********9....888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2786.08
//
Query:       CCE26778.1  [L=589]
Description: probable lysine-tRNA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-75  254.3   0.3    1.9e-75  253.9   0.3    1.2  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    7.7e-08   32.2   0.0    1.7e-07   31.1   0.0    1.6  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    2.5e-06   27.2   0.0       0.01   15.4   0.0    2.3  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.9   0.3   3.2e-79   1.9e-75       2     313 ..     238     586 ..     237     587 .. 0.92

  Alignments for each domain:
  == domain 1  score: 253.9 bits;  conditional E-value: 3.2e-79
                  CCHHHHTHHHHC.CSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEEE CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   2 eelrlknryldl.rtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqia 98 
                   e+r+++ryldl  +ek ++++ +r++v +++r+++++++f+ ++tP+L   ++++ a++F+++++e + ++f L+++p+lyl++l+v+g++rv++++
   CCE26778.1 238 PETRFRQRYLDLmMNEKSRQIFITRAKVDSYIRRWFDDRDFVSVQTPMLNPIAGGATAKPFVTHHNELNMDMF-LRVAPELYLKMLVVGGLNRVYEMG 334
                  589*********9*******************************************************88999.************************ PP

                  EEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS..EE-SSS-EEEEHHHHHHHHHTS.........-S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx.........xx RF
  tRNA-synt_2  99 raFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrns..kdlkkpfkrltykeaieklnei.........gk 185
                  r+FR+E ++ ++++ EFt++e++m++++  d+m+++eel++ lvk++ ++s k ++++i+ ++   + + p++++++  a+e++ ++         ++
   CCE26778.1 335 RQFRNEGMDLTHNP-EFTTLEFYMAYADVYDLMNMTEELVSGLVKHI-HGSYKTVYHTIKGEEinINWEGPWRKIEMIPALEEAVGEkfppadtlhTD 430
                  **************.********************************.99999999999988756777888************777767776666522 PP

                  S--HHHHHHHHH...................................HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB-- CS
                  xxxxxxxxxxxx...................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 186 dldkaderalvk...................................keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRie 248
                             +                                   ++  +p+f++ +P++++p+++ ++++ + l e++++++   E+++++++++
   CCE26778.1 431 -----------EanqffkkvlaktgvecsppltnarmldalvgeyleSQCINPTFIIGHPKMMSPLAKDSRTT-PGLCERFEVFVSTKEIANAYTELN 516
                  ...........13333334444477778888888888888999999888889******************999.9*********************** PP

                  SHHHHHHHHHHCCHH.....SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 249 dpeeleeklkskgld.....eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                     e++ +++++  +     +ea+  ++ +++ale  +pp+gG+g+G+dR++m+l+++ sIr+v+aFP +
   CCE26778.1 517 VATEQRLRFEEQARQksqgdDEAQMADETFCQALEHALPPTGGWGMGIDRMMMFLTDNYSIREVLAFPTM 586
                  ***********9999999999***********************************************87 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   2.8e-11   1.7e-07       2      75 ..     131     220 ..     130     221 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 2.8e-11
                      EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET.......HHHHHHHTTS-TTSEEEEEEEEEEC..TTS.........SEEEEEEEEEE CS
  tRNA_anti-codon   2 tvaGrvtsisdrsggkvifidlrDgtgriqvvlfr.......eeatklaenlkeGdvvrvtGrvkrr..pgg.........elelkveeiel 75 
                       +aGrv  ++  +g+k++f+d+r +  r+qv +           +++++ +l++Gd+++++G ++r+  + +         el++ + e++l
       CCE26778.1 131 QLAGRVYVRR-SAGSKLFFYDIRSDGVRLQVLAQAenlddkaPCFEEQHVHLRRGDIIGIRGFPTRTnpK-NkqgsgdfsgELSIAAIEVTL 220
                      589******9.********************************************************762.245678888888888777776 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.7e-06      0.01     103     152 ..     329     376 ..     325     409 .. 0.82
   2 !    9.3   0.0   0.00012       0.7     212     234 ..     558     580 ..     541     584 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-06
                   EEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHH CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleellkkl 152
                   ++  +gr fR++ +D th +eF+ +e+ ++  +  + dl+ + eel++ l
    CCE26778.1 329 RVYEMGRQFRNEGMDLTHNPEFTTLEFYMAYAD--VYDLMNMTEELVSGL 376
                   56679**********************998755..568888888887766 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00012
                   EEEEEEHHHHHHHHHT-SSGHHH CS
  tRNA-synt_2d 212 fafGlGveRlamlkygieDiRel 234
                    ++G+G++R+ m+ ++   iRe+
    CCE26778.1 558 GGWGMGIDRMMMFLTDNYSIREV 580
                   58*************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1282  (0.0715043); expected 358.6 (0.02)
Passed bias filter:                      694  (0.0387082); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 3963.22
//
Query:       CCE26779.1  [L=286]
Description: related to N-methyltransferases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-14   53.1   2.1    7.4e-14   52.3   2.1    1.4  1  WBS_methylT      Methyltransferase involved in Williams-Beure
      6e-11   42.8   0.0    1.1e-10   42.0   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    4.1e-10   40.2   0.0    8.7e-10   39.2   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    4.2e-05   24.2   0.0    0.00011   22.8   0.0    1.8  1  Methyltransf_12  Methyltransferase domain
      0.001   18.8   0.0     0.0019   18.0   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0079   16.0   0.0      0.011   15.5   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.018   14.9   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
      0.015   14.6   0.0       0.21   10.9   0.0    2.0  2  CMAS             Mycolic acid cyclopropane synthetase
      0.084   12.2   0.0       0.15   11.3   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain


Domain annotation for each model (and alignments):
>> WBS_methylT  Methyltransferase involved in Williams-Beuren syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   2.1   3.7e-17   7.4e-14      30      81 ..     233     283 ..     211     284 .. 0.77

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 3.7e-17
  WBS_methylT  30 kyekrrrkrkkrkkkkkkavk..sreWilkKKerrrkkGkeVkrdSKYTGRkRk 81 
                  ++ + r++ k+   +++ + k  s+ Wi+kKKe++++kGk Vk++SKYTGRkR+
   CCE26779.1 233 DILDARKRLKT---GNNGPLKkgSKAWIVKKKEQQERKGKVVKATSKYTGRKRR 283
                  55555544443...333333336******************************7 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   5.6e-14   1.1e-10       1      96 []      52     161 ..      52     161 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 5.6e-14
                      EEET-TTSHHHHHHH....HTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TSS-TT-EEEEEEES-CCC-...C........C CS
  Methyltransf_11   1 LdvGcGtGrlaeala....krg..arvvgvDlskemlklakekaseeglkvefvvadaek.lpfednsfDlvvssevlhhv...e........d 76 
                      Ld+GcG+G+  e l     + g  ++ +g+D+s+ ml++a ++ +e +    ++ ad+ + +pf+ ++fD+ +s ++++++   e        +
       CCE26779.1  52 LDIGCGSGLSGEMLSavdpSEGgpHTWIGMDVSPSMLDIALQRDVEGD----LLLADIGQgVPFRAGTFDAAISISAIQWLcsaEssdtspagR 141
                      8*******999999988884446*****************99999987....59*****978*******************875267788888* PP

                      HHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  77 pekalkeiaRvLkpgGllvi 96 
                      + ++++ ++  Lk gG+ v+
       CCE26779.1 142 LTRFFNGLYASLKRGGRAVC 161
                      ****************9885 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   4.4e-13   8.7e-10       1      97 []      51     157 ..      51     157 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 4.4e-13
                      EEEET-TTSHHHHHHHCTS....TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGG.........GSSHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl....gkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalh.........hlsde 80 
                      +Ld+GcG+G   ++l++      g ++++g+D+s++ml++a +r     ++ +++ +d+ + +pf +g+fD+ +s+ a++           +  
       CCE26779.1  51 ILDIGCGSGLSGEMLSAVDpsegGPHTWIGMDVSPSMLDIALQRD----VEGDLLLADIgQGVPFRAGTFDAAISISAIQwlcsaessdTSPAG 140
                      8********9888888664555459*****************999....789*******666*************8778822222222112222 PP

                      HHHHHHHHHHHHEEEEE CS
  Methyltransf_25  81 dlekalkeiarvLkpgG 97 
                      +l ++++ ++  Lk gG
       CCE26779.1 141 RLTRFFNGLYASLKRGG 157
                      33556666666666665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   5.7e-08   0.00011       1      98 [.      52     158 ..      52     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.7e-08
  Methyltransf_12   1 LeiGcGtGsllrallekl....pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl........... 79 
                      L+iGcG+G   ++l +       + + +g+D+sps+++ a ++  + + + ++  +     ++      +fD+ ++++++++l           
       CCE26779.1  52 LDIGCGSGLSGEMLSAVDpsegGPHTWIGMDVSPSMLDIALQRDVEGDLLLADIGQGVPFRAG------TFDAAISISAIQWLcsaessdtspa 139
                      8*****9988888877778877777888*********88888877777766666666666654......********************99999 PP

  Methyltransf_12  80 kdirevldnirklLkpgGr 98 
                        + ++++ +++ Lk gGr
       CCE26779.1 140 GRLTRFFNGLYASLKRGGR 158
                      99999***********997 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   9.7e-07    0.0019      58     113 ..      32      90 ..      10     107 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 9.7e-07
                 -HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTC...EEEEEESBHHHHHH CS
        PCMT  58 aphmvalalellelkkgarvLevGsGsGyltavlarlvgekg...rvvsierikelvee 113
                 + +m  +alell+l+  + +L++G+GsG    +l+ +  ++g   + ++++ ++++ + 
  CCE26779.1  32 QASMTRRALELLDLSSPSLILDIGCGSGLSGEMLSAVDPSEGgphTWIGMDVSPSMLDI 90 
                 5689999**********************999998876666656566666666666655 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.7e-06     0.011       7      85 ..      51     131 ..      45     184 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.7e-06
  Methyltransf_31   7 vlDlGCGtGeltfelae...elgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevl.....n 85 
                      +lD+GCG+G  +  l       g   + +G D s+ ++  A ++       +  +  +di +  +  +   +fD  +s +++     +
       CCE26779.1  51 ILDIGCGSGLSGEMLSAvdpSEGGPHTWIGMDVSPSMLDIALQRDV-----EGDLLLADIGQgVP--FRAGTFDAAISISAIqwlcsA 131
                      8*******86666665577755555779***************722.....24477888888888..888888888888777665541 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0     9e-06     0.018      12     119 ..      38     163 ..      27     184 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9e-06
  Methyltransf_23  12 klerllpklraggrvLdiGcGtGi...llevl..rengf.svtgvDlspeaveiae.......kakkaqkdqfdeq......eaaepqgkfdlI 86 
                        ++ll+ l +++ +LdiGcG+G    +l+    +e g  + +g+D sp + +ia                             ++ +g+fd +
       CCE26779.1  38 RALELLD-LSSPSLILDIGCGSGLsgeMLSAVdpSEGGPhTWIGMDVSPSMLDIALqrdvegdL-----------LladigqGVPFRAGTFDAA 119
                      4455665.788899*******9952335666644333444999********9997333333220...........1222222333366677775 PP

  Methyltransf_23  87 vlrevlehvpdpp...........ellrqiatllkpgGylllse 119
                      +++  + ++ + +           + ++ +++ lk gG+++++ 
       CCE26779.1 120 ISISAIQWLCSAEssdtspagrltRFFNGLYASLKRGGRAVCQF 163
                      55444444333333334555555566666666777777776665 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011      0.21      41      74 ..      26      59 ..      16      70 .. 0.87
   2 ?    1.5   0.0     0.076   1.5e+02     141     170 ..     138     167 ..     110     187 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                --HHHHHHHHHHHHHTTTT--TT-EEEEES-TTS CS
        CMAS 41 mtLeeAqlaKldlileklelkpGmtlLdiGcGWG 74
                  +++ q + ++++le l+l   + +LdiGcG G
  CCE26779.1 26 SRIQNIQASMTRRALELLDLSSPSLILDIGCGSG 59
                5688999999**********************88 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.076
                 SGGGHHHHHHHHHHHS-TT-EEEEEEEEE- CS
        CMAS 141 gkenydtffkklkkllkedGllllhtitsl 170
                    ++ +ff+ l+  lk++G+ + +   + 
  CCE26779.1 138 PAGRLTRFFNGLYASLKRGGRAVCQFYPKN 167
                 566899**************9988765554 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.5e-05      0.15      29      79 ..      13      64 ..       7      72 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.5e-05
                    HTSSHHHHHH.HHHHHHTTHHHHHHHHHHSS-GGG-SEEEEET-TTSHHHHH CS
  Methyltransf_2 29 ikrdeeerak.fnkglqessslvakkvleafdleglkslvDvGGGtGalaka 79
                    +++d e r+   ++ +q+ +  +++++le  dl++ + ++D+G G+G   ++
      CCE26779.1 13 HYDDTEARKYtTSSRIQNIQASMTRRALELLDLSSPSLILDIGCGSGLSGEM 64
                    5666555543145678999999************************976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1993.50
//
Query:       CCE26780.1  [L=210]
Description: related to transmembrane protein Tex-261 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-89  299.2   0.8    1.8e-89  299.0   0.8    1.1  1  Erv26            Transmembrane adaptor Erv26
     0.0086   15.9   1.6     0.0086   15.9   1.6    1.9  2  Cytochrom_C_asm  Cytochrome C assembly protein


Domain annotation for each model (and alignments):
>> Erv26  Transmembrane adaptor Erv26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.0   0.8   2.1e-93   1.8e-89       1     205 [.       1     195 [.       1     196 [. 0.97

  Alignments for each domain:
  == domain 1  score: 299.0 bits;  conditional E-value: 2.1e-93
       Erv26   1 mwilellsylglvlgflfltlaiasgLyYlsElvEEhtvlakrllkrliyaiiaiqvllllvdkfpltltllsivshvvylqnlrrfPvvkltdplfll 99 
                 mwi+++++y+g+v+gf+fltl+iasgLyYlsElvEEhtv+akrll+rliy++i+++++l+lvd+fpl  tl++i++hvvyl n+rrfP+vkl+dplfll
  CCE26780.1   1 MWIFPFVGYAGAVVGFCFLTLSIASGLYYLSELVEEHTVFAKRLLTRLIYTVIGVHLILWLVDGFPLGATLVGIFAHVVYLGNMRRFPMVKLSDPLFLL 99 
                 9************************************************************************************************** PP

       Erv26 100 scvlvvlnhylwfrhFskkqarlkkessyykkkkdvpsfteiasffglcvWlvPfalfvsLsAgdnvLPtmgsesasgessssssesekkkkkkkgllk 198
                 scvlv+++hy+wfr+Fs+ q+r++++ssyy++ + vpsf+ iasffglcvWlvPfalfvsLsAgdnvLPtmg+e  +g+         + + k +g++k
  CCE26780.1 100 SCVLVLVDHYMWFRYFSDFQTRAYQRSSYYDHVD-VPSFSMIASFFGLCVWLVPFALFVSLSAGDNVLPTMGTEPVRGA---------DGRGKPQGMVK 188
                 **************************99998887.************************************99988865.........45788999999 PP

       Erv26 199 avvdkvr 205
                 a+vd+vr
  CCE26780.1 189 ALVDYVR 195
                 9999997 PP

>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.6   9.6e-07    0.0086     128     177 ..      11      60 ..       6      82 .. 0.80
   2 ?   -1.5   0.7       0.2   1.8e+03      75      75 ..     131     131 ..      89     162 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.6e-07
  Cytochrom_C_asm 128 iiliGfvlltigiilGsvWaeeaWGsywsWDpketaslitWlvfaallhs 177
                       + +Gf++lt++i +G ++ +e+ +++ ++  ++   li  ++   l+  
       CCE26780.1  11 GAVVGFCFLTLSIASGLYYLSELVEEHTVFAKRLLTRLIYTVIGVHLILW 60 
                      6789**************************99999999977776655543 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.2
  Cytochrom_C_asm  75 H 75 
                      H
       CCE26780.1 131 H 131
                      2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1452.32
//
Query:       CCE26781.1  [L=448]
Description: related to ubiquitin-like protein DSK2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-20   70.4   0.1    1.1e-19   69.9   0.1    1.2  1  ubiquitin    Ubiquitin family
      3e-08   33.4   0.6    3.8e-07   29.9   0.1    2.9  3  UBA          UBA/TS-N domain
    2.7e-05   23.9   0.1    4.6e-05   23.2   0.1    1.3  1  Rad60-SLD    Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
       0.01   15.9   0.0      0.022   14.8   0.0    1.5  1  HOIP-UBA     HOIP UBA domain pair
      0.014   15.1   1.5      0.014   15.1   1.5    2.4  2  GET2         GET complex subunit GET2
      0.018   15.6   0.0      0.041   14.4   0.0    1.6  1  DUF2407      DUF2407 ubiquitin-like domain
       0.04   14.0   0.0      0.076   13.1   0.0    1.5  1  Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
      0.071   13.6   0.6        0.4   11.2   0.6    2.0  1  Ubiquitin_2  Ubiquitin-like domain
       0.28   11.2  20.3      0.064   13.2   5.0    3.1  3  STI1         STI1 domain
        2.4    8.2   8.8        0.5   10.3   4.0    2.2  2  GerD         Spore germination GerD central core domain


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.1   6.1e-23   1.1e-19       2      70 ..      16      86 ..      13      88 .. 0.92

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 6.1e-23
                EEEETTSEEEEEEEETTSBHHHHHHHHHHHH..TSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEES CS
   ubiquitin  2 tvktldgkkitleveesdtveelKekiaeke..gipaeqqrLiysGkvLedertleeygiqdgstlhlvlr 70
                +vkt +  ++tl+++es t++elK k+a++   +ip e+qrLiysG+v++++ tl++y+++ ++t+h+v +
  CCE26781.1 16 KVKTSSEHNYTLTMPESATILELKTKLASEDfeKIPIERQRLIYSGRVMKNDDTLGSYNVKHNNTIHMVRS 86
                68999999*******************9876537**********************************976 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.54   9.6e+02       2      11 ..     151     160 ..     150     160 .. 0.88
   2 ?   -1.4   0.0       1.3   2.3e+03      20      30 ..     287     298 ..     284     298 .. 0.82
   3 !   29.9   0.1   2.1e-10   3.8e-07       2      37 .]     407     443 ..     406     443 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.54
                 CHHHHHHHHH CS
         UBA   2 deeaiqrLve 11 
                 de++iqr+++
  CCE26781.1 151 DEDRIQRMMS 160
                 89******96 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.3
                 HHHHHHTTT.SH CS
         UBA  20 veALratgn.Ne 30 
                 ++AL+ tg+ N+
  CCE26781.1 287 LQALSGTGGgNP 298
                 79*****99775 PP

  == domain 3  score: 29.9 bits;  conditional E-value: 2.1e-10
                 CHHHHHHHHHTT.S-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   2 deeaiqrLveMG.FdreevveALratgnNeErAveyL 37 
                 ++e++ +L +MG Fd +++v ALr++g+N++ Ave L
  CCE26781.1 407 YAEQLRQLNDMGfFDFDRNVAALRRSGGNVQGAVEHL 443
                 89**********99999******************87 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   2.6e-08   4.6e-05       2      71 ..      14      84 ..      13      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.6e-08
                EEEEEESSS--EEEEEETTSBHHHHHHHHHHH..HT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEE CS
   Rad60-SLD  2 kiilkgkdgkevkikVkptttvskLieayrkk..kgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvv 71
                + ++k+++  ++++   ++ t+ +L+++++++  ++ip  +++rLi+ G+ +++++t++++ ++ + ti++v
  CCE26781.1 14 TFKVKTSSEHNYTLTMPESATILELKTKLASEdfEKIPI-ERQRLIYSGRVMKNDDTLGSYNVKHNNTIHMV 84
                5689999999*******************9985569999.*****************************987 PP

>> HOIP-UBA  HOIP UBA domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.2e-05     0.022     102     136 ..     409     443 ..     404     444 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.2e-05
    HOIP-UBA 102 kKvkelaslgffdreevveaLrqsgGdvegAlveL 136
                 +++++l ++gffd ++ v+aLr sgG+v+gA+ +L
  CCE26781.1 409 EQLRQLNDMGFFDFDRNVAALRRSGGNVQGAVEHL 443
                 57899**************************9987 PP

>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   5.9       2.8     5e+03     109     152 ..     185     235 ..     143     263 .. 0.58
   2 ?   15.1   1.5   7.9e-06     0.014      71     177 ..     312     416 ..     281     418 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.8
        GET2 109 dqllkqllqqqqqgnsensqdaesstPdlfsqllkmmkqgegg........s 152
                 + +l+++ ++    +s+  + ++++ P+++sq ++m  ++ g+        +
  CCE26781.1 185 NPMLRNIPNARDIISSPF-MRHMMTNPQMMSQAMRMQRNMRGAesafpapgM 235
                 445555555543333333.445677889999999999999888644433331 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 7.9e-06
        GET2  71 ddp.eiediseiavkpkktasskkksplseesepeapqldqllkqllqqqqqgnsensqdaesstPdlfsqllkmmkqgeggsakseeetssspeeaey 168
                 d p ++++ s   +++++t++ +++ + +++++++a+ +++l+   +++q  ++ + +++ +  tP++++q+ +    g+g+ ++ ++++++ p+e+ y
  CCE26781.1 312 DGPqSTTQSSGTHNAQSTTQAAGTDGSQNTQFQNAANPFAALFP--FGSQAPQERDPGNPYG-MTPEMMQQMVQIIRGGGGNVPNPASPPDTRPPEERY 407
                 44444445555667777888888888888888999888888886..5666666666666655.59********************************** PP

        GET2 169 qqqlleyhk 177
                  +ql + ++
  CCE26781.1 408 AEQLRQLND 416
                 ***998875 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.3e-05     0.041      19      71 ..      28      80 ..      15     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.3e-05
     DUF2407 19 pdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslklpees 71
                + p+++t+ +Lk+   ++  +++  +r rLIy+Gr++++  +l s   +++++
  CCE26781.1 28 TMPESATILELKTKLASEDFEKIPIERQRLIYSGRVMKNDDTLGSYNVKHNNT 80
                457999*******9999999******************999998765555443 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.3e-05     0.076      19      86 ..      28      84 ..      11     104 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.3e-05
                 EEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEE CS
  Rad60-SLD_2 19 kfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvv 86
                 +++++at+ elk k+ +   +d e+ p  ++  +li++G++++n  tl++++++  ++      +H+v
   CCE26781.1 28 TMPESATILELKTKLAS---EDFEKIP--IERQRLIYSGRVMKNDDTLGSYNVKHNNT------IHMV 84
                 56778888888888876...4666644..45669*****************9888877......4443 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6   0.00023       0.4      20      81 ..      29      84 ..      12      89 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00023
                 EETTSBHHHHHHHH..HHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEEE CS
  Ubiquitin_2 20 fsksltieelKekL..elitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihVi 81
                 +++s ti elK+kL  e +  ++ + +rL +          +++++d +LgsY+vk++ +ih +
   CCE26781.1 29 MPESATILELKTKLasEDFEKIPIERQRLIYS--------GRVMKNDDTLGSYNVKHNNTIHMV 84
                 56667777777777444466666666666665........45578899**************76 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.0   3.6e-05     0.064      11      44 ..     152     186 ..     149     191 .. 0.86
   2 ?    6.5   3.0    0.0043       7.7      27      47 ..     203     223 ..     195     225 .. 0.81
   3 ?   -2.2   0.1       2.3   4.2e+03      21      30 ..     374     383 ..     374     387 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
        STI1  11 nPetrellsDPefvakleeiqsNPqalqqym.sDp 44 
                   ++++++sDP +++ ++e  sNPq + + + s+p
  CCE26781.1 152 EDRIQRMMSDPNVQQSMNEALSNPQFVDMLIeSNP 186
                 5689*********************8887777777 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0043
        STI1  27 leeiqsNPqalqqymsDprim 47 
                 ++ +++NPq+++q m+ +r m
  CCE26781.1 203 MRHMMTNPQMMSQAMRMQRNM 223
                 788999999999999766665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.3
        STI1  21 Pefvakleei 30 
                 Pe+++ + +i
  CCE26781.1 374 PEMMQQMVQI 383
                 5666655555 PP

>> GerD  Spore germination GerD central core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.0   0.00028       0.5      47      84 ..     152     186 ..     149     219 .. 0.68
   2 ?   -2.4   0.1       2.4   4.4e+03      69      80 ..     373     384 ..     372     386 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00028
        GerD  47 ekllkdLmkDpeYqkmlleilkdpemekqllellkske 84 
                 e+ ++++m+Dp+ q+++ e l +p++ ++l+e   s+ 
  CCE26781.1 152 EDRIQRMMSDPNVQQSMNEALSNPQFVDMLIE---SNP 186
                 566899*******************9988764...333 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.4
        GerD  69 dpemekqllell 80 
                  pem++q+++++
  CCE26781.1 373 TPEMMQQMVQII 384
                 589999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3417.38
//
Query:       CCE26782.1  [L=269]
Description: uncharacterized protein CPUR_00251 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-47  162.0   0.1    1.8e-47  161.4   0.1    1.3  1  HD_3      HD domain
    7.9e-08   32.3   0.0    1.5e-07   31.4   0.0    1.4  1  HD_2      HD containing hydrolase-like enzyme


Domain annotation for each model (and alignments):
>> HD_3  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   0.1     2e-51   1.8e-47       2     150 ..      61     212 ..      60     224 .. 0.93

  Alignments for each domain:
  == domain 1  score: 161.4 bits;  conditional E-value: 2e-51
        HD_3   2 ekLKfqkRqgwlqtgrvreesvaeHmwrvalmalllseelkekvdiarvikmfLiHDlvEiltgDiispdelakeekeeeekeaaerilkllpee.... 96 
                 e+LK++kR+gw+++g++r es+++Hm+r+++++++++++l+++++  +++km+LiHD++E+l+gDi+++d++ k ek+++e  +++ ++k l ++    
  CCE26782.1  61 ERLKTTKREGWRRFGVERGESISDHMYRMSIISMFAPPSLAPRLNLPKCMKMCLIHDMAELLVGDITPVDGVPKPEKSRRESLTMDFLTKSLFGNkhda 159
                 89*****************************************************************************************98887788 PP

        HD_3  97 .laeellalweEFeeretkeakfakdlDklepllqalekegdslaafeaklsqvy 150
                  +++e++++w+E+ee++t ++++++d+Dk+e+llq++e+e++   a+  +l+++ 
  CCE26782.1 160 aVGQEIRDIWDEYEESKTLDSHYVHDIDKMELLLQMTEYERRAEGAL--DLNEFA 212
                 899*************************************9987766..555554 PP

>> HD_2  HD containing hydrolase-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.6e-11   1.5e-07       2     146 ..      56     200 ..      55     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.6e-11
        HD_2   2 FfallsrlkyieR..walmrntreenvaeHslevaliahalalienkkfggkldaerlallalyHDasEiitGDlptpvKyan..peireaykevEeea 96 
                 Ff+ l+rlk+ +R  w      r e++++H +++++i+++        +  +l++ +++++ l+HD++E+++GD+ tpv      ++ r++  ++   +
  CCE26782.1  56 FFHALERLKTTKRegWRRFGVERGESISDHMYRMSIISMFAP----PSLAPRLNLPKCMKMCLIHDMAELLVGDI-TPVDGVPkpEKSRRESLTMDFLT 149
                 9************55555556899************997754....4445689*********************9.78865430034455555566667 PP

        HD_2  97 eekllelLpeelreeyeella.deeaeeeekklvkaaDklsalikcleelk 146
                 ++ + ++ ++ + +e+++++   ee ++   ++v+  Dk++ l++++e ++
  CCE26782.1 150 KSLFGNKHDAAVGQEIRDIWDeYEESKTLDSHYVHDIDKMELLLQMTEYER 200
                 7777788899999999999953555556689999999**999999887544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2197.64
//
Query:       CCE26783.1  [L=99]
Description: uncharacterized protein CPUR_00252 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 754.16
//
Query:       CCE26784.1  [L=680]
Description: related to transcription adaptor ADA2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-11   44.3   0.0    1.6e-10   41.5   0.0    2.2  2  Rhodanese        Rhodanese-like domain
      9e-09   35.0   4.8    1.8e-08   34.1   4.8    1.5  1  ZZ               Zinc finger, ZZ type
    1.1e-08   35.1   0.0    4.4e-08   33.2   0.0    2.1  2  Myb_DNA-binding  Myb-like DNA-binding domain
    7.2e-08   32.7   0.0    1.9e-07   31.3   0.0    1.7  1  SWIRM            SWIRM domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.39   1.7e+03       7      37 ..     318     354 ..     313     378 .. 0.67
   2 !   41.5   0.0   3.5e-14   1.6e-10      10     106 ..     560     660 ..     551     661 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.39
   Rhodanese   7 ellekgkvallDvRppeeY..ek.ghIpgAvnv...s 37 
                 +l+e ++ ++ D R+ e+Y  ek  +++ A+ +    
  CCE26784.1 318 QLQEWRNLKIGDLRSGEKYeaEKaARVQKALPMgsmD 354
                 56677777899***99999663446888888885332 PP

  == domain 2  score: 41.5 bits;  conditional E-value: 3.5e-14
   Rhodanese  10 ekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggr.aaaaaallk..........k.......lG 90 
                 +++++a++DvR+ + Y  ghI+g +n+         ++ + +l +p  ++el  +nk+ vv++c+ +++    a  ++k          k       l 
  CCE26784.1 560 SDPSYAIIDVRDGD-YIGGHIKGCINI---------PTLQLDLRMPRLVEEL--KNKRMVVFHCALSQQrGPTA--AMKysqgreallkKqgpegpgLP 644
                 677888******65.************.........8899999999999998..***************44444..33323455555442555554444 PP

   Rhodanese  91 yknvsvldGGfkawke 106
                  ++v vl GGf++w++
  CCE26784.1 645 DQEVVVLQGGFSGWQK 660
                 466***********96 PP

>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   4.8     4e-12   1.8e-08       4      42 ..      17      58 ..      15      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 4e-12
                -EE-TTT-S..EESSEEEES..SSSS-EE-HHHHHH..H--- CS
          ZZ  4 kytCdgCseapligvRyhcl..rcsdYDLCqsCfst.hkagk 42
                ky Cd+Cs++ +  vR +c+  +csd+DLC+sCf +      
  CCE26784.1 17 KYVCDVCSSDITSTVRIRCAhpVCSDFDLCVSCFAKgESRNA 58
                799****************9556***********98655555 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   9.8e-12   4.4e-08       3      44 ..      80     123 ..      78     124 .. 0.95
   2 ?   -3.7   0.0       3.3   1.5e+04       8      20 ..     451     463 ..     451     466 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 9.8e-12
                      SSBHHHHHHHHHHHHHHT.TCHHHHHHHHTS.S-HHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhG.nrWkkIaerlgg.Rtekqcrsrwrn 44 
                       W ++E++lLle+ + +G ++W+ Ia+++gg R + ++r+++++
       CCE26784.1  80 DWGADEELLLLEGAEIYGlGSWADIADHIGGfREKDEVRDHYLR 123
                      6*****************************88**********85 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.3
                      HHHHHHHHHHHHT CS
  Myb_DNA-binding   8 EdelLleavkkhG 20 
                      E+ +L e+++++ 
       CCE26784.1 451 EEARLCEVIRLQP 463
                      899*****99875 PP

>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   4.2e-11   1.9e-07       7      88 ..     444     514 ..     440     515 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 4.2e-11
       SWIRM   7 dpdslhpiEkellselfngkdktpeeYlkiRnkiialyrenpkeyltvteaqkalkrrrltgidvnllsrihefLerwGlIN 88 
                 d + l+p+E +l++ ++     +p+ Yl i+++i+++  ++ +  l++++a++ ++       d ++  ri++f+ + G++ 
  CCE26784.1 444 DLHLLTPEEARLCEVIR----LQPKPYLMIKEQILREALKT-NGTLKKKQAKEICR------LDSQKGARIFDFFINAGWLG 514
                 67899************....*******************9.677******88888......7*****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 5215.34
//
Query:       CCE26785.1  [L=383]
Description: probable galactose-1-phosphate uridylyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-70  237.8   0.3    1.4e-69  234.2   0.3    2.0  2  GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-
    4.8e-59  198.8   0.0    1.1e-58  197.7   0.0    1.5  1  GalP_UDP_tr_C    Galactose-1-phosphate uridyl transferase, C-
     0.0013   19.4   0.0     0.0041   17.8   0.0    1.9  1  HIT              HIT domain
  ------ inclusion threshold ------
      0.047   13.8   0.0      0.094   12.8   0.0    1.5  1  GP3_package      DNA-packaging protein gp3
      0.054   14.0   0.0       0.13   12.8   0.0    1.6  1  DcpS_C           Scavenger mRNA decapping enzyme C-term bindi
       0.13   11.1   0.1        9.8    4.9   0.0    2.7  3  DUF4921          Domain of unknown function (DUF4921)


Domain annotation for each model (and alignments):
>> GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.2   0.3   4.7e-73   1.4e-69       6     184 .]       7     208 ..       3     208 .. 0.95
   2 ?    1.4   0.0      0.13   3.7e+02       5      44 ..     288     327 ..     284     333 .. 0.85

  Alignments for each domain:
  == domain 1  score: 234.2 bits;  conditional E-value: 4.7e-73
  GalP_UDP_transf   6 ddaiyashrrfnpltgewvlvsphrtkrpwqgqqekiskdtlpekDklkcyLcPgnsrangefnpkykstfvftndFpalsedsnyikteaiak 99 
                      dd+   shrr+nplt++w lvsphrtkrpwqg+qe+++++tlpe+D +kcyLcPgnsra ge+npky++tf+f nd++a++e+++ ++++a+ +
       CCE26785.1   7 DDI---SHRRYNPLTDSWLLVSPHRTKRPWQGAQETAAANTLPEYD-PKCYLCPGNSRAAGETNPKYEKTFAFVNDYSAVKEQQPGYEQDAKPN 96 
                      566...9***************************************.******************************************99866 PP

  GalP_UDP_transf 100 n...ilfkaepayGrceviifsskheltladlspkdikavvaaWqektaelka........................keypkcvlifENkGaam 166
                      +    l++a++++G c+v++fs++h+ltlad+++ +i +v+++W++ +a+  a                        + ++++++ifENkG+am
       CCE26785.1  97 DlesMLLRAQSVTGVCYVLTFSPQHNLTLADMPAPEILPVIEHWTQIYANHVAasnplaklacnlnialpkdaapvpNAEYRYMQIFENKGSAM 190
                      67778*********************************************4446778888999******************************* PP

  GalP_UDP_transf 167 gvsnphPHgqiwaeehlp 184
                      g+snphPH+q+w+++++p
       CCE26785.1 191 GCSNPHPHCQVWTTSTMP 208
                      ***************998 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.13
  GalP_UDP_transf   5 eddaiyashrrfnpltgewvlvsphrtkrpwqgqqekisk 44 
                      + +ai+   rr+++l++ +   s+ + + p++g +e++++
       CCE26785.1 288 LAEAIQEVTRRYDNLFECSFPYSSGIHQAPLSGTEEEMEN 327
                      5566777889*************************99954 PP

>> GalP_UDP_tr_C  Galactose-1-phosphate uridyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.7   0.0   3.5e-62   1.1e-58       2     155 ..     215     371 ..     214     381 .. 0.96

  Alignments for each domain:
  == domain 1  score: 197.7 bits;  conditional E-value: 3.5e-62
                    HHHHHHHHHHH.SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EE CS
  GalP_UDP_tr_C   2 ldsfekYfagsngsillhdyvqmelaekervvelkdsflavvpylakWPfevlllrkaevkslaeladeekedlaailkklarkydnlfetsfeys 97 
                    l + +kY a+++g +ll dyv++ela++ervv +++sf++v p++a WPfevl+l+k++++ l ++ +ee+++la ++++++r+ydnlfe+sf+ys
     CCE26785.1 215 LTQMTKYRAENQGRHLLGDYVKLELAKEERVVWQNNSFVVVCPWWALWPFEVLVLPKRHIRCLIDFKAEERHELAEAIQEVTRRYDNLFECSFPYS 310
                    67889******************************************************************************************* PP

                    EEEE---SCCCTT...TT--EEEEE--BCSSTTEB----THHHHT-EEESS-HHHHHHHHH CS
  GalP_UDP_tr_C  98 mGlhqaplnaeed...nswlHaHfevpllrsatvrkieVGlelLperlrdllaEqaaerlr 155
                     G+hqapl+++e+   ns++H+Hf++pllrsatv+k +VG+el++e++rd+++Eqaa+rlr
     CCE26785.1 311 SGIHQAPLSGTEEemeNSYFHMHFYPPLLRSATVKKWLVGYELMAEPQRDITPEQAAARLR 371
                    **********999898899*****************************************9 PP

>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.4e-06    0.0041       5      67 ..     242     309 ..     238     335 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.4e-06
                 -CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCT.....T CS
         HIT   5 pstvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkf.....k 67 
                 +++vv +++ ++++    + +p  +Lv+pk+h++ l d+++ee+ +l +a+++v +   + f      
  CCE26785.1 242 EERVVWQNNSFVVVCPWWALWPFEVLVLPKRHIRCLIDFKAEERHELAEAIQEVTRRYDNLFecsfpY 309
                 678889999999999999999**********************************9988877555551 PP

>> GP3_package  DNA-packaging protein gp3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.2e-05     0.094      14      82 ..      74     146 ..      65     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.2e-05
                  HHHHHHHHHHHHS-EEEEE......EEEE-----HHHHHHHHT--HHHHHHHGG..S.HHHHHHHHHHHHHHH CS
  GP3_package  14 akakeYfewcdaeplkeak...egyevvgdraptvtGLalyLgisrstlkeyekrkr.efsetierikqiven 82 
                  a ++ Y   ++++p +e +   ++ e++  ra +vtG++  L +s +   + +   + e+  +ie   qi  n
   CCE26785.1  74 AFVNDYSAVKEQQPGYEQDakpNDLESMLLRAQSVTGVCYVLTFSPQHNLTLADMPApEILPVIEHWTQIYAN 146
                  678999999999999998888978999******************7766666666777999999999888765 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.2e-05      0.13      12      98 ..     241     333 ..     234     345 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.2e-05
                 S-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T-EEEEE--SCCCT-..........-S-S--EE CS
      DcpS_C  12 epervvyedekfvvlkDikpkaklhllvipkrdikslrdLtkehlpllkemrekakkvieekynevdaeelrvgvhyqP..........svyhlHlH 98 
                 ++ervv ++++fvv+    +  ++ +lv+pkr+i+ l d+++e+ + l+e  +++    ++ + e  +     g+h +P          s+  +H+H
  CCE26785.1 241 KEERVVWQNNSFVVVCPWWALWPFEVLVLPKRHIRCLIDFKAEERHELAEAIQEVTRRYDNLF-E-CSFPYSSGIHQAPlsgteeemenSY--FHMH 333
                 57999999999999999999999*****************88877766666555555554444.3.2223566666666665555442233..4444 PP

>> DUF4921  Domain of unknown function (DUF4921)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0033       9.8       6      62 ..      11      70 ..       6     118 .. 0.76
   2 ?    2.7   0.0     0.015        46     218     264 ..     174     220 ..     168     257 .. 0.77
   3 ?   -0.7   0.0      0.16   4.7e+02      83     123 ..     290     329 ..     267     333 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0033
     DUF4921  6 ikqvnPftGtevWtvpgrgnrPlsekaeetapleeedreeacafcedrkl...etpPeka 62
                 ++ nP+t +     p r++rP + ++e++a  +  + + +c  c  +     et P   
  CCE26785.1 11 HRRYNPLTDSWLLVSPHRTKRPWQGAQETAAANTLPEYDPKCYLCPGNSRaagETNPKYE 70
                5789****9999999********999999999999999999***9876542226777544 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.015
     DUF4921 218 nryvrYvavfqnWLkpaGasfdhlhkqlvaiDergvqaeaeiarlre 264
                 n + rY+++f n     G s  h h q+ +  ++  + e+e++++ +
  CCE26785.1 174 NAEYRYMQIFENKGSAMGCSNPHPHCQVWTTSTMPKEPEQELTQMTK 220
                 56678999999999999999999999998888888888888777654 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.16
     DUF4921  83 edtvaefrrvpnLfeivsydyWkknygfeldeeaaarkeeY 123
                 e+ +   rr  nLfe  s+ y +  ++  l+ ++++ +++Y
  CCE26785.1 290 EAIQEVTRRYDNLFEC-SFPYSSGIHQAPLSGTEEEMENSY 329
                 3345557999999995.888877777777777776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2653.85
//
Query:       CCE26786.1  [L=170]
Description: probable ERG28-involved in synthesis of ergosterol [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-41  140.6   1.0    3.2e-41  140.2   1.0    1.2  1  Erg28     Erg28 like protein


Domain annotation for each model (and alignments):
>> Erg28  Erg28 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   1.0   1.8e-45   3.2e-41       1     110 []      13     153 ..      13     153 .. 0.99

  Alignments for each domain:
  == domain 1  score: 140.2 bits;  conditional E-value: 1.8e-45
       Erg28   1 glLpkwllfvsvvslgnslqnyvtlkltrrvYsgkpk...............................eqvtplsaRtfgtwtllsaivrlyaaynien 68 
                 g+Lp+++l++sv+s+gn lq+y tl+++rr+Y+g++                                +q+tpl++R+fgtwtl+++ivr+yaayn++ 
  CCE26786.1  13 GVLPYYMLVLSVISIGNCLQTYSTLHFSRRLYNGRFLpntklraasakynpedstdklvsaqndpkatDQMTPLAGRLFGTWTLITSIVRCYAAYNLHL 111
                 68********************************99999************************************************************ PP

       Erg28  69 kalyqlalltyvialvhflsEllvfktaklgkgllfplivat 110
                  ++y++a +ty++a++hf++E ++fk++++g +++fp+++at
  CCE26786.1 112 GPMYNIAYWTYIVAFGHFFTEKFMFKSMTFGLPQVFPFTLAT 153
                 **************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1233.14
//
Query:       CCE26787.1  [L=347]
Description: related to human 17-beta-hydroxysteroid dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-36  126.1   0.0    1.6e-36  125.6   0.0    1.2  1  adh_short        short chain dehydrogenase
    3.8e-22   79.0   0.0      5e-22   78.6   0.0    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    5.9e-07   29.6   0.0    9.7e-07   28.9   0.0    1.3  1  KR               KR domain
  ------ inclusion threshold ------
      0.055   13.4   0.1       0.13   12.1   0.1    1.7  1  NAD_binding_10   NAD(P)H-binding
      0.098   11.8   0.0       0.14   11.3   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
       0.15   12.1   0.1       0.43   10.6   0.0    1.8  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.0   5.5e-40   1.6e-36       2     191 ..      70     266 ..      69     269 .. 0.91

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 5.5e-40
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSES..EEEE---S..S--S CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.....gakalaiqvDvtdreevealvekavkklgkld..vLvnNAGi..tgsg 91 
                 +++vtGas+G+G+++a +la++G+++v+v+r+++kl ++akel+e+     g ++ ++++D ++ ++++  +e+ ++ + +ld  +L+nN+G   + ++
  CCE26787.1  70 WAVVTGASDGLGKEYASQLAAKGFNLVLVSRTKAKLDTLAKELQEKylgkgGLQVKTLAMDFAKDDDAD--YEQLAELIRGLDvaILINNVGQshSMPV 166
                 69*******************************************999887789********9666544..5666666655552279******877888 PP

                 SGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short  92 pfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 +f e+ +ee ++++ +N  g++++t+ v+p ++++++G I +++S  g  p + +a Ys sKa++++++++l+ ela++ + v  v   lv T+m k +
  CCE26787.1 167 SFLETPKEELQNIVTINCLGTLKVTQVVAPILKARKRGLILTMGSFGGWTPTPYLATYSGSKAFLQQWSNALSSELADDHVDVYLVLSHLVTTAMSKVR 265
                 8999999****************************************************************************************9866 PP

                 C CS
   adh_short 191 r 191
                 r
  CCE26787.1 266 R 266
                 5 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0   1.7e-25     5e-22       1     180 [.      75     263 ..      75     281 .. 0.89

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 1.7e-25
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE....E..EE--TTSHHHHHHHHHHHHHHHSSEE..EEEE-----EGCSS-GG CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae....v..lecDVtdeeqvealveevvekfgklD..ilvnnagiapklkgpfl 88 
                   Ga  g+G++ A +la++G ++vl+ + +++ +  ++el+e++  +    v  l++D +++++ +   e+++e + +lD  il+nn+g ++++  +fl
    CCE26787.1  75 GASDGLGKEYASQLAAKGFNLVLVSRTKAKlDTLAKELQEKYLGKgglqVktLAMDFAKDDDAD--YEQLAELIRGLDvaILINNVGQSHSMPVSFL 169
                   899***************************8888999999864332433477999*99998876..67777777777733689************** PP

                   GH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGG CS
  adh_short_C2  89 etsreefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaas 180
                   et++ee+++++ +n+ +++++++ ++p++k++  g i+++ s+g+   +p  + y+ +Ka l++ + +l  el+++ + v  v   ++ T +++
    CCE26787.1 170 ETPKEELQNIVTINCLGTLKVTQVVAPILKARkrGLILTMGSFGGWTPTPYLATYSGSKAFLQQWSNALSSELADDHVDVYLVLSHLVTTAMSK 263
                   ***************************7776657********************************************************9976 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.3e-10   9.7e-07       3     162 ..      71     237 ..      69     247 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.3e-10
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHH..HHHTT-EEEE----TT-HHH..HHHHHHHHHHHSS---EEEE------..-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliae..lealgaevevvaaDvsdkda..vealleeikaeeppikGvihaAgvlr..dk 95 
                  ++tG+  gLG+e a +la+kg  +lvl+sR++a+ ++ +++++e  l + g +v+++a+D ++ d+   e+l e i+  +  ++  i+  g ++    
  CCE26787.1  71 AVVTGASDGLGKEYASQLAAKGF-NLVLVSRTKAKLDTLAKELQEkyLGKGGLQVKTLAMDFAKDDDadYEQLAELIRGLD--VAILINNVGQSHsmPV 166
                 58********************6.7*******755555444443323666699*********9876511567777776544..5556666665551145 PP

                 -TTT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR  96 lleemtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                  + e+ +e+l++++   + G+  + +++++    ++  +++++ S +g + ++  a+Y+   afl ++ + 
  CCE26787.1 167 SFLETPKEELQNIVTINCLGTLKVTQVVAPilkaRKRGLILTMGSFGGWTPTPYLATYSGSKAFLQQWSNA 237
                 67788899999999999999999999988777778889999999999999999999999999999887665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.4e-05      0.13       1      38 [.      75     111 ..      75     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.4e-05
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleae 38 
                     GA+ + G++ +++l+a+ g++++++ R+++kl+ l++e
      CCE26787.1  75 GASDGLGKEYASQLAAK-GFNLVLVSRTKAKLDTLAKE 111
                     9999*************.5*************987643 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.6e-05      0.14       2     112 ..      72     191 ..      71     197 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.6e-05
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-T.TEEEE.......E--TT-HHHHHHHTT..T-SEEEE------.. CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkk.klkveivpv...igdvrdkerlekaleelkvdvvfhaAAlKh.. 89 
                      +vtGa+  +G+e  +q+++k   +++l++r+  kl++++kel+e++  k  l+v+++++     d +d e+l+++++ l+v ++++     h  
       CCE26787.1  72 VVTGASDGLGKEYASQLAAKGF-NLVLVSRTKAKLDTLAKELQEKYLGKgGLQVKTLAMdfaKDDDADYEQLAELIRGLDVAILINNVGQSHsm 164
                      69**************998776.68999*************98887554144444322211023445677888888877777777665555432 PP

                      .HHHHHH...SHHHHHHHHHHHHHHHH CS
  Polysacc_synt_2  90 .VPlvee...npleaiktNvlgtenvi 112
                       V  +e+   +  + ++ N lgt +v 
       CCE26787.1 165 pVSFLETpkeELQNIVTINCLGTLKVT 191
                      233333311133344555666666665 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00015      0.43      23      59 ..      80     115 ..      65     132 .. 0.85
   2 ?   -1.9   0.0       1.1   3.2e+03      49      80 ..     124     153 ..     119     157 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
                   HHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.E CS
  Shikimate_DH  23 maelvakhLlakgvkkvvvaNRtlerakelaeelkge 59 
                   ++++ a++L+akg++ +v + Rt ++ ++la+el+++
    CCE26787.1  80 LGKEYASQLAAKGFN-LVLVSRTKAKLDTLAKELQEK 115
                   68999*********9.88999*************876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
                   HHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEE CS
  Shikimate_DH  49 akelaeelkgeeiealkleelkellaeadvvi 80 
                   +k+la ++ ++     ++e+l el++  dv i
    CCE26787.1 124 VKTLAMDFAKD--DDADYEQLAELIRGLDVAI 153
                   67788888555..6778889999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2531.30
//
Query:       CCE26788.1  [L=485]
Description: probable histidine--tRNA ligase, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-37  129.4   0.0    3.4e-37  128.4   0.0    1.5  1  tRNA-synt_His   Histidyl-tRNA synthetase
    8.2e-10   38.7   0.0      2e-09   37.5   0.0    1.7  1  HGTP_anticodon  Anticodon binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   0.0   3.7e-41   3.4e-37       1     310 []      21     357 ..      21     357 .. 0.87

  Alignments for each domain:
  == domain 1  score: 128.4 bits;  conditional E-value: 3.7e-41
                    T---EETCHHHHHHHHHHHHHHHHHHTT-EEEE--SEEEHHHHCTTSTCCHHHS-EEE-TTSSEEEE-SSSHHHHHHHHHHHHHTSS-EEEEEEEE CS
  tRNA-synt_His   1 glrdllpeeaekieelrrrlldlfeswGYelVspPllEyldslltgagedldqtfklvDqsgrllglRaDiTpqvaRiaahrlnrerplRlcYaGs 96 
                    g+rd   +++  +ee+ + ++d+f+++G  +  +P++E  + l  + ged++ ++ l Dq g+l +lR D+T+  aR  a + n +++ R++ a +
     CCE26788.1  21 GTRDWSGQDMLMREEVFKMITDVFKRHGGTPLDTPVFELKEILSGKYGEDSKLIYDLQDQGGELCSLRYDLTVPFARWLAMN-NIQSVKRYHIA-K 114
                    678999999999*******************************************************************986.69999998765.5 PP

                    EE.ESS-SS.TT--CCEEEEEEEEESS-SHHH.HHHHHHHHHHHHHHHCTSSSEEEEEEETCHHHHHHHHTT--HHHHHHHHHHHHCT-HHHH... CS
  tRNA-synt_His  97 vl.rtrpdg.lgrsreplQvGaEliGaeglea.dlEvlslllealeaaagvkelrldlghvglvralleaaglsesleeallaalarkdlael... 186
                    v+ r +p+   gr re+ Q+   + G+ ++   d+Evl++++e+++ a+++ +++++l+h ++++ +++ ag++e++ +a+ +a+++ d  +    
     CCE26788.1 115 VYrRDQPAIaRGRFREFHQCDFDIAGVYDPMIpDAEVLRIIVEVFD-ALKL-GVTIKLNHRQVLDGMFAVAGVTEDKIRAISSAVDKLDKMSWedv 208
                    66155555545799************9966555************7.9999.******************************99988887665111 PP

                    .HHHHHCCTTHHHCCHCC....HCCH...CCCHHHHCHCCHCTHHHHHHHHHHHHHHHHHHHHHHHH-TTEEE-TT--TTTTT--SEEEEEEE... CS
  tRNA-synt_His 187 .kelaaeaglkealrellkal.elyg...daevleealealaaapalqaaldeleelaallealakpevrvtlDlaelrgyeYytGlvFaaya... 274
                     ke+++e+gl++++++ +  + + +g   +  +l + + +l+a++++++ l+++  la++++a++  + +v++Dl++ rg++YytGl+++++    
     CCE26788.1 209 kKEMVEEKGLETEVADRIGEYvRNAGtisQTLALLNSKPELVANEQVKSGLADMTLLATYVDAFG-ISDKVSFDLSLARGLDYYTGLIYEVINlpp 303
                    246788999999999999888754441113445677778899999999999***********998.79**************************** PP

                    .................TT-SS..-SEEEEEECTTTGGG.T---EEEEEEEEHHHH CS
  tRNA-synt_His 275 .................egvgq..aiarGGrYdelgaaf.grarpAtGfsldleal 310
                                      +  q   ia GGrYd+l++++ +r+ p++G s+ ++++
     CCE26788.1 304 kpeegaasgkkskkddpAS--QvgSIAAGGRYDNLVGMYgKRQIPCVGISFGVDRI 357
                    ***9999998777664322..2459**************889**********9986 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   2.2e-13     2e-09       1      93 [.     377     482 ..     377     483 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 2.2e-13
                     SEEEEESSSS..HHHHHHHHHHHHHHHHTTTSEEEEES.SSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEE............. CS
  HGTP_anticodon   1 qvvviplnek..aeeleeyakklaeeLraagirveldd.snesigkkireadllgipfavvvGekelekgtvtvrdrdtreq............. 79 
                     +v+v++++ k  +  l+++++++a++L+ agir+e+    + ++ ++++ a+  g+p+ v++G++el  g+v ++++  +e              
      CCE26788.1 377 DVYVMAFGGKefS-GLLPERMSVAQRLWSAGIRAEFSPkVKPKLPQQFKAAE--GVPLGVILGQDELAAGQVRLKKLGQGEAkagedesgsrddg 468
                     6899999998744.489*********************************97..***********************555444555556666777 PP

                     EEEETTHHHHHHHH CS
  HGTP_anticodon  80 ervsldelveklke 93 
                     + vsld+l+e++k+
      CCE26788.1 469 QLVSLDDLAEEVKK 482
                     99*******99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3555.61
//
Query:       CCE26789.1  [L=1415]
Description: related to NUP170-nuclear pore protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-94  317.2   0.1    2.2e-94  316.7   0.1    1.2  1  Nucleoporin_N  Nup133 N terminal like
    2.8e-46  158.5   3.0    1.1e-45  156.6   0.5    2.3  3  Nucleoporin_C  Non-repetitive/WGA-negative nucleoporin C-term


Domain annotation for each model (and alignments):
>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.7   0.1   2.5e-98   2.2e-94       4     434 .]     145     593 ..     143     593 .. 0.93

  Alignments for each domain:
  == domain 1  score: 316.7 bits;  conditional E-value: 2.5e-98
                    SCEEEEEEE--HCHHHTTS--SS-EEEEEECTTTEEEEEETTEEEEEETTSSSS...EEEEEE----S---EEEEEE---SSSS-SSSCEEEEECT CS
  Nucleoporin_N   4 dfykvsklalPdelleelnhtesstkgglfpeigrawitvdnklflWnYnstasspstdtipydgeehtilavglLvkpkpgtfveevgllLvvat 99 
                    +f+k++ +++P+++++++n+ e +t +glf+ei+ aw+++dn l+lW+Y++++    ++ i +++++h+i+a++ Lv pkpg+fv  ++++Lvvat
     CCE26789.1 145 PFHKTQMYPIPNQVFDHYNAGELQTLMGLFAEINHAWVVIDNCLYLWDYTHPE----PELIGFEEQTHSIHAIA-LVPPKPGIFVNTITHILVVAT 235
                    78999989*********************************************....9****************.********************* PP

                    TSEEEEECECCS--------EEEEEEEE--EETT.TTEEEEEEETTTC-EEEEETTS.SEEEEEEC-SSS-CEEEEEEEEE-SSSS-...--SSS- CS
  Nucleoporin_N 100 tgeivyweviysaasllstnelslfntdlsvssdgeivtqvinseptgriflagstg.rlyeltyrdssgwpslkckkicltkgglssllsilpgv 194
                    + e +++++++s+ ++  t+ + l++t+++++  g++v   i++  +grif++gs++ ++ el y++++ w+s++c  i++t+ g+ss++s+  ++
     CCE26789.1 236 SSEMILLGLSASDTPA-GTKSVALYQTKMNLPLRGNDVRV-ISGSADGRIFFGGSSDcDINELYYQSEEKWFSNRCGRINHTNPGWSSVVSLQTSF 329
                    *************886.99*******************95.77777***********9*****************************999999999 PP

                    -G----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCE..E-EEEEEEEHHHHHHHH.HHSCHTTTCGCTTT-EEEEEEES-TTTSSCEEEEE CS
  Nucleoporin_N 195 lsgasereeivqlridssrrilytlsskgvirvydlsasng..esslksdidirqilleaitesliasaplaskslkildispvsaeessllhlva 288
                    +s ++e+e+i+ ++id+sr+++ytlssk++ir+y +  +    +   k+++++ ++++++     i+++ l + +l+i++isp+s+ e+s+lhl+a
     CCE26789.1 330 WS-QKEPEHIIDIVIDDSRNLVYTLSSKSTIRTYYMDGPDRlsKVIEKEKVHCLRDIAHM-----ITQSKLLTDRLNIVSISPISKLEASKLHLMA 419
                    99.**********************************77656566666666666777766.....88889************************** PP

                    EECSSSEEEEEEEEE........EEECTTT-EEEEEEEEE.........EEEECCCCCSSSSSSSBECC-CC...SSETTCEEEEEEES-...-SE CS
  Nucleoporin_N 289 itsngvrlylllsss........ssdspsalslvsvrfpp.........krlntysskllenkkksklllps...kiispgiflfvvfdk...ssa 361
                    +t++g+rl++++++         s  +p++++++ ++fpp          ++ +  ++++e +  s  llps   +++ pg fl  v +    + +
     CCE26789.1 420 LTDSGCRLFFSATNAssylygsqSNMAPQSMQVQYIKFPPsqnprrgplAQSSQVGETVVELE--STMLLPSrqgARFAPGFFLDFVSSArdtNID 513
                    ************9999999999989999999*********99988877777777777777777..******************988887778799* PP

                    EEEEEEEE-TTTTSSS......ESEEEECCS--SE-EEEEE--T--T--CCCCCCSSTTCTTT.TS---EEEETTTEEEE CS
  Nucleoporin_N 362 vvlvslpdtgilkksq......lvedasflpldgkwediislrksfdatilpsgyenesatqy.keParvalltntGvvi 434
                    +++vs p tg++k  +      + e+as++++ ++ e +   +k+f a+ +p g++ne+a q+   P+++a+ltntG++i
     CCE26789.1 514 TLFVSGPETGRIKRVSpnvplrYFEQASWIDIGSRAEAVGLVTKPFAAAPQPVGFGNELAVQFdEPPSEFAVLTNTGIHI 593
                    **************999**********************************************666666*********97 PP

>> Nucleoporin_C  Non-repetitive/WGA-negative nucleoporin C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.1     9e+02      70     104 ..     337     376 ..     303     448 .. 0.59
   2 ?    0.9   0.0     0.017   1.5e+02      10      48 ..     738     786 ..     729     813 .. 0.86
   3 !  156.6   0.5   1.2e-49   1.1e-45     178     592 ..     823    1267 ..     808    1271 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.1
                    XXXXXX.................................. CS
  Nucleoporin_C  70 siieli.....klneeageeDaVRhwFihdvdrleiiiaw 104
                    +ii  +     +l  + +++  +R +++ + drl ++i++
     CCE26789.1 337 HIIDIViddsrNLVYTLSSKSTIRTYYMDGPDRLSKVIEK 376
                    2333333333333344455555555555555555555554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.017
                    XXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXX... CS
  Nucleoporin_C  10 yrlssLeiLaeflksngeslsr...........dtrwellwqAEkiaaat 48 
                    +  ++Le L +f++sn+  +++           +  +e+++qAE+ a  +
     CCE26789.1 738 STQENLESLRKFIESNRGLIQGmsgpsdlqrvsTMHEEVALQAEHQA-LH 786
                    56678999*********99999999*******999**********98.44 PP

  == domain 3  score: 156.6 bits;  conditional E-value: 1.2e-49
                     XXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHH......HHHHHHHHHHXXXXX CS
  Nucleoporin_C  178 ldLtklllkdlfapn.........lssiinrnisrgesieleatllqeicgslcsltdvllfraiErlrwake......qkdkklqnaikllek 256 
                      +L +l++++lf+++         + +i+nrni++g++ e+ a +l+++cgs+cs +dv++f+a E+l++a+e        ++ l+++ kl+ek
     CCE26789.1  823 QQLRELTYEKLFSQTdgkdlakllVKAIVNRNIESGSNVETVADALRRRCGSFCSPDDVVIFKAQEQLKRASEqapntnLFRSLLDESLKLFEK 916 
                     46777778888888888899999999***********************************************999887667889999****** PP

                     XXXX.........XXXHHHHHHHHHHHHTSXHHHHHHHHHHHHH..HHHXS.......SSSXHHHH......HHHHHHH............... CS
  Nucleoporin_C  257 aydearkeqilkLlsigkleeaielaekledfralvellleianklasdkg.......ederkelyekaeelekriely............... 328 
                        +         l++ +l+ a++     +++ ++v l+l  a+  ++d+g       +d +   ++++++ ++r   y               
     CCE26789.1  917 VAGS---------LTFANLQAAVSQYVAMQYYAGAVLLCLVVAR--EKDRGntalawvNDGNPAGDSREDAFNDRKRCYdmihdiltqldavss 999 
                     ****.........******************************9..6666666899997777777777777788888888888889999***** PP

                     ........................SSSXXHHHHHHHHHHHHHTTXGGGGGGX..XXTTHHHHHHHTX....XHHHHHHTHHHHXXSHHHHHHHH CS
  Nucleoporin_C  329 ........................fekfgkaFayalYdwlisqgqqekLLdlkedtsfilpFLrekp....elakllWiydvkekdfeeAAeiL 394 
                                               + ++ F++ lY+w+i+qg  +++L +  d++++  FL+  +    e a+ll  y+  +++f++AA + 
     CCE26789.1 1000 sqpetidgkptlmttkreeaykvvNGSDDEVFHFDLYEWYIQQGWTDRMLAI--DSPHVITFLERLAdshfEHADLLCRYHTLRDRFFDAALVQ 1091
                     **********************9777999***********************..**********99999************************* PP

                     HHHHSSSSXXXHHHHHH.HHHHX---HHH................HGGGHHHHHHHHHHHHHHHH.......................H-TT.. CS
  Nucleoporin_C  395 ysLalskeqlvlskrie.LSlakLaqLaeleesekekkglekklekieellevaaiQddllalilpsiegaidekaeveLamekfgkklderpa 487 
                      +La s++ l  ++ri  L+lak    +   + e +++++++  + + + l+va+iQddll+  +                       +der  
     CCE26789.1 1092 AQLANSDFPLGIKDRIRlLALAKG-NASV-VTGEVSRQHQQQLNHEVSDWLDVANIQDDLLERLR-----------------------VDER-- 1158
                     **********************83.3333.2334444556777789*******************.......................****.. PP

                     S-HHHHHHHHHHHHHS---HHHHHHHTT.........TTTT-HHHHHHHHHHTT---HHH............HHHHHHHHHHHHHHH-...... CS
  Nucleoporin_C  488 lrqllkdelkklLkhkildasdLidlltLidtkeeeedplgefelALkvlkvsdlrneeeealekliWRRcvIrddWeelnetkkked...... 575 
                     ++++ k ++++ L++ki d+s L+++++         d+ g++ ++L++ + +++rn+++            I   W +l ++ ++e       
     CCE26789.1 1159 FDAERKADIEQDLDGKIQDLSYLFNNYA---------DQAGYYDVCLEIYHSANYRNTTS------------ISTTWINLIRQTHEEVvarlen 1231
                     ****************************.........***********************............8888888877776666666666 PP

                     ...................HHHHHHHTT-TTTS-HH CS
  Nucleoporin_C  576 ...................akvekklsstalvftls 592 
                                        +k+  ++s  ++vf+++
     CCE26789.1 1232 pdqdmpnppmpyeavsskiQKIACHTSLDSFVFPIK 1267
                     667777777777666655555555555555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 8985.91
//
Query:       CCE26790.1  [L=296]
Description: uncharacterized protein CPUR_00259 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.33s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2024.90
//
Query:       CCE26791.1  [L=124]
Description: uncharacterized protein CPUR_00260 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-16   59.6   0.1    5.1e-16   59.4   0.1    1.0  1  DUF2781   Protein of unknown function (DUF2781)


Domain annotation for each model (and alignments):
>> DUF2781  Protein of unknown function (DUF2781)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.1   2.9e-20   5.1e-16       1      95 [.       7     120 ..       7     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 2.9e-20
     DUF2781   1 DlvyllyflihipitllvDlqvllpaslf.p.....hflsklrewyiatnnDplllep..paWfksfvllelffqlPlffiavyaLl.....kk..... 81 
                 D+vyl +++++++ tl++Dl +l+p+sl+ +     h+l +lr w+ + ++Dp++++    +W++ f+++e+++q+Pl ++ v+++             
  CCE26791.1   7 DKVYLPIVAVQLVGTLVLDLLPLYPPSLWqSpssplHSLLSLRTWWASYSGDPYFATLtpEPWLEGFLYVEALVQFPLTAYLVWKFSqglglGLglgqr 105
                 899**********************9999537999********************865559*************************9555550044444 PP

     DUF2781  82 .ekpwlrllllvYgv 95 
                  ++   +l+ l+Yg 
  CCE26791.1 106 rTSGPTELAGLAYGG 120
                 577889999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 977.85
//
Query:       CCE26792.1  [L=874]
Description: uncharacterized protein CPUR_00261 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 6072.52
//
Query:       CCE26793.1  [L=298]
Description: related to protein tyrosine phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-07   31.5   0.0    3.4e-07   30.1   0.0    1.7  1  DSPc          Dual specificity phosphatase, catalytic domain
  ------ inclusion threshold ------
      0.034   14.4   0.0      0.067   13.5   0.0    1.5  1  Init_tRNA_PT  Rit1 DUSP-like domain


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   3.8e-11   3.4e-07       1     131 [.      53     210 ..      53     212 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 3.8e-11
                 EEEEECCHHC.HHHHHHHTCSEEEEESSSSSEC..ECCTTTTSEEEEECCES.........................STTSCCGGGHHHHHHHHHHHHH CS
        DSPc   1 lylgskstas.lallsklgitlvinvtkevpna..nalkkseieklripved.........................ehetkiskyleeavefidkakq 71 
                 lylg  s++  l+ l+ +git+++ v  ++  a  +   +   ++l ipve                          + ++++  + ++   +  + + 
  CCE26793.1  53 LYLGPTSSIRdLESLTSQGITMMVVVRYSRM-AgnIRSVDRASQELGIPVEYvrlggfpdlirelpriiglinrhmlSCNSQFMGHADQGQHMAMDRRP 150
                 6788888888778888888887775543333.3444445667778888888888888888888888888888877777777777888888888888889 PP

                 TT-EEEEEESSSSSHHHHHHHHHHHHHHTSCHHHHHHHHHHHSTT-SSTHHHHHHHHHHH CS
        DSPc  72 kgkkvlVHCqaGisRSatliiaYlmktknlslneayeflkerrpaispnagfirqLleye 131
                 + +kvl+ C  G   Sat+++aYlm+ ++ ++ +a +fl  +r + +  +  +++L  +e
  CCE26793.1 151 RCGKVLITCDSGNYHSATIAAAYLMSVFGQTAASATQFLTLQRLSCVFDEDAKQMLQTWE 210
                 99*************************************999966666667777777776 PP

>> Init_tRNA_PT  Rit1 DUSP-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.4e-06     0.067      19      67 ..     114     182 ..     108     225 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.4e-06
  Init_tRNA_PT  19 talpkivdfvrkrlsedkk....................kkilvacetGkdlsvgvaLailcklfddak 67 
                    +lp+i+  +++++ + ++                     k+l++c++G+  s+ +a a l+++f +  
    CCE26793.1 114 RELPRIIGLINRHMLSCNSqfmghadqgqhmamdrrprcGKVLITCDSGNYHSATIAAAYLMSVFGQTA 182
                   56677777776666665555666777777777888888889************************3332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.32s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2104.66
//
Query:       CCE26794.1  [L=650]
Description: related to ATP dependent RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-14   52.5   0.3      1e-13   51.0   0.3    1.9  1  SUV3_C      Mitochondrial degradasome RNA helicase subunit C 
    5.8e-13   48.5   0.2    1.2e-12   47.4   0.2    1.6  1  Suv3_C_1    Suv3 C-terminal domain 1
    7.2e-09   36.0   0.0    1.8e-08   34.7   0.0    1.7  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> SUV3_C  Mitochondrial degradasome RNA helicase subunit C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.3   1.7e-17     1e-13       1      47 [.     559     605 ..     559     606 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 1.7e-17
                 -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH CS
      SUV3_C   1 LerLEslhkvldLYlWLSyRfpevFpdrelaeelkkeveekIeeaLe 47 
                 L +LE+lh  ++ Y WLSyR+ ++F d++la++++++veek+  +L+
  CCE26794.1 559 LAKLEALHVAINQYVWLSYRYAGMFRDQALAFHVRHLVEEKLIATLD 605
                 779***************************************99997 PP

>> Suv3_C_1  Suv3 C-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.2   2.1e-16   1.2e-12       1      43 []     484     526 ..     484     526 .. 0.98

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 2.1e-16
    Suv3_C_1   1 elAelIqpipLSlrdRytFcmAPvntrdpkavaaLvkfArqya 43 
                 e+A+ Iq+ipL++ dR+tFc+ P ++r + av++L+++Ar +a
  CCE26794.1 484 EIADIIQDIPLTIYDRLTFCYLPASLRAQGAVEVLRALARVVA 526
                 79**************************************997 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   2.9e-12   1.8e-08      26     110 ..     292     387 ..     272     388 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.9e-12
                 HHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESGGGTSSSTSTTESEEEESSSS.........SSHHHHHHHHTTSSST CS
  Helicase_C  26 idrlek.vklllekkgikvavlhgelpqnereeileqfn..kgesdvLiatdvaerGidipkvnlVinfdlp.........rnvtsyiqriGRtgRa 110
                 +++l+   + +++k g ++a+++g+lp + r +  + fn  ++++d+++a+d++++G+++ +++ Vi+ ++           +  +++q  GR+gR+
  CCE26794.1 292 RKSLHAlKRTIETKTGRRCAIIYGSLPPEVRVQQASLFNdpDNDYDFVVASDAIGMGLNL-EIRRVIFESVTkydgnqhrlLSFPEIKQIGGRAGRY 387
                 333322247777777************************88899****************.699999877776665554444459***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       871  (0.0485805); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4393.53
//
Query:       CCE26795.1  [L=237]
Description: related to vesicle-associated membrane protein 722 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-32  109.9   0.2    5.1e-32  109.5   0.2    1.2  1  Synaptobrevin   Synaptobrevin
    3.6e-27   94.2   0.1    7.2e-27   93.3   0.0    1.5  2  Longin          Regulated-SNARE-like domain
  ------ inclusion threshold ------
       0.92    9.7   3.0         14    5.8   0.0    2.2  2  Arch_flagellin  Archaebacterial flagellin


Domain annotation for each model (and alignments):
>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.2   8.5e-36   5.1e-32       2      87 ..     147     232 ..     146     234 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 8.5e-36
                    XXHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin   2 ndklakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlililiiiivi 87 
                    +d + ++++e+d+v++im++Ni+++lerge+ld+Lvdkt++L +saq+F+ ++r lkr+mwwkn+kl+ +l+lv+++++++++i+i
     CCE26795.1 147 DDAIGNAQREIDDVRGIMTKNIESLLERGERLDLLVDKTDRLGNSAQDFRVRSRGLKRQMWWKNVKLMGLLGLVIFLIVMVLVIAI 232
                    688999****************************************************************************9987 PP

>> Longin  Regulated-SNARE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         2   1.2e+04      34      42 ..      12      20 ..       9      31 .. 0.60
   2 !   93.3   0.0   1.2e-30   7.2e-27       1      83 [.      38     129 ..      38     130 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2
      Longin 34 tylviades 42
                 y +ia+++
  CCE26795.1 12 LYSCIAHKT 20
                555555543 PP

  == domain 2  score: 93.3 bits;  conditional E-value: 1.2e-30
      Longin   1 aklilkkishsspqkltythdsytfhyla...........edgltylviadesyprrlaFafLeeikreFlakygtaktadaadlrpyafaeFd 83 
                 a+lil+ki+h++pqkltyth++  +hy++           ++glt+lviad++++rr++F fL ei+++Fl++++   ++d++++++y++ +F+
  CCE26795.1  38 ASLILPKIEHRTPQKLTYTHGQNQIHYVSeapseypdhpaAGGLTFLVIADAALGRRVPFGFLFEIRKRFLQQFP--ASSDFSEMPNYGAGSFN 129
                 799**************************9999999999889*********************************..5569*********9**8 PP

>> Arch_flagellin  Archaebacterial flagellin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0024        14     108     150 ..     155     197 ..     114     203 .. 0.80
   2 ?    1.7   3.1     0.044   2.6e+02       5      20 ..     217     232 ..     214     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0024
                     ..............T-EE-TT-EEEEEEE--TTT---TT-EEEE CS
  Arch_flagellin 108 vvisdtdgsltng.devlekgekvelevnvneddgitagdevsv 150
                      +i+d +g +t++   +le+ge+++l v+ + d   +  ++++v
      CCE26795.1 155 REIDDVRGIMTKNiESLLERGERLDLLVDKT-DRLGNSAQDFRV 197
                     5688888888888899*************85.555666666666 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.044
                     HHHHHHHHHHHHHHHH CS
  Arch_flagellin   5 igtlIvfIAmVlVAAv 20 
                     +g +I +I+mVlV A+
      CCE26795.1 217 LGLVIFLIVMVLVIAI 232
                     6779*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1833.58
//
Query:       CCE26796.1  [L=683]
Description: related to spindle assembly checkpoint protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-64  218.5  65.0    2.1e-64  218.1  59.5    2.0  2  MAD           Mitotic checkpoint protein
    0.00066   19.1   4.9    0.00066   19.1   4.9    4.4  5  DUF2353       Uncharacterized coiled-coil protein (DUF2353)
     0.0098   15.8  10.7     0.0098   15.8  10.7    5.5  4  CEP63         Centrosomal protein of 63 kDa
  ------ inclusion threshold ------
      0.015   14.5   1.0      0.015   14.5   1.0    5.1  5  Tho2          Transcription factor/nuclear export subunit pro


Domain annotation for each model (and alignments):
>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   1.0    0.0031        14     494     528 ..       4      38 ..       2      42 .. 0.82
   2 !  218.1  59.5   4.6e-68   2.1e-64      12     657 ..      39     674 ..      35     678 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0031
         MAD 494 PaakakqqkkeqlekLqaEierlkellkkleedke 528
                 P a+ +++ k+++e+L+aEi  l+ ++++ e++ke
  CCE26796.1   4 PDADEYEKYKKEIEALKAEIGTLQYRMQTAEQEKE 38 
                 77888999999999999999999999998887776 PP

  == domain 2  score: 218.1 bits;  conditional E-value: 4.6e-68
         MAD  12 eqlknelkqkelehkrarielekkasalkrqleeesdrnqelqkrikllekreeekeealreqiElarlkkknlealnkkekekesklaearevisalk 110
                 + l+++ +++e  ++r++ el ++ +a + q ++ +d+ +++++++++ ++r +++++al+ ++ +a+              e +  +++++++++a+ 
  CCE26796.1  39 IALSQQSNRMEQARRREQEELHQR-QAAEAQQAKAVDQVEAVKAELEESKERLAAEAKALERKAREAQ-------------DEAQLLQEQLEDLSTAKD 123
                 56889999*************999.5555556788999999***999999999999999999888888.............899999999********9 PP

         MAD 111 nelaelkrqiekqelelsekeseleelqerldllkkklseleqliqqlekkqkelaeaeqrikeLefeiqsqeddslivknskselaripelekelerl 209
                 +  +   +++++ +l +++ +s +eel+++ ++ + +++++  li++ e++  +l++   r   L+ +    e   +i ++  ++++ i  le+  + +
  CCE26796.1 124 DAARIADKKLNDMQLLVTSLQSSIEELEQESQVREDNVQQAHSLIAEKESHIAKLEADVLR---LKAQSGDAETMGIIKRELTEQVQHIRALEATNRDQ 219
                 999999***************************************9988777666665555...5556666777888888899999************* PP

         MAD 210 reenkklnelkenkelLkEevedlkkkLereEkareelvkLelekekleqeLksWeklaqdtgL.....nlrsPealsrkieqLqqeeivlkeekssle 303
                   e k+l+++++ +e+++Ee+  l+++L+ +E    el++  l++++l+ e  +W    ++  L     +  sPea++r +++   + ++++e+  +l 
  CCE26796.1 220 LIELKHLRSVSKAVEVVEEEKRTLQRRLQSTETLETELAESRLQRQRLQDERLAWAAYLKN-SLesgddEFDSPEAMARALVEERLTTASYVEQLGALR 317
                 *******************************************************998885.77788899***************************** PP

         MAD 304 sslkqlekaqreleqelaqllkkiedlkkkrke..hkelkrRLQrrvllltkErdllrailesyDke...lteseaspklleRieeaedlvqkvqahne 397
                  ++++++++ r l++e aql+ ++e  k+   +  +++ + R  r+ +l+ kE ++lra ++ +D+e   + +++++  ++ Ri+e+e lv++++   +
  CCE26796.1 318 AEMSAQQNTLRLLQDERAQLKDQVESAKTTAGTlsTDKARMRVDRQRILALKEVEYLRAQVKAFDDEdqtMQPENHDDTRSVRIQELEALVDQYKSEVQ 416
                 **************************999877611566777889************************99999**********************8888 PP

         MAD 398 eveaqlevaeeevggykqqastlerelqalrqqesladassskeevdslkkkleeLelerqrLreqkeelElele..rreLqgdydlkktkVlhlseNP 494
                 +++ +l+ +e         a    + ++  ++ ++++d+  ++e++ +l +k+ +L+ ++  L  +  +lE  l   r++L    ++++t++l l++NP
  CCE26796.1 417 SLHSELSAME------PASAGISPQPVTGAKRPHAEDDE--AQEQLGQLSRKNRKLQEDVTTLHTKVAMLEKDLSanREQLSAAKEQSSTRILSLRSNP 507
                 8888888888......55677778889999999999999..78*******************************9999********************* PP

         MAD 495 aakakqqkkeqlekLqaEierlkellkkleedkekkvaslpessltlafkevleLrkelesaelkiqrlKevFkakiqEFRevvYmLlGYkidittnsq 593
                 +++ + +k+  le+L++E++ l   l++    +  +v  +p+s l   ++e++  ++e +sa++  +rlKev+  k+qEF+e++++ lG+ + + +n++
  CCE26796.1 508 TSEFEAIKRSTLEALKRENSDLLTQLRSRSGTNHLTVPVIPTSVLAAMEREIAAAKAETASAQKSAKRLKEVWGSKSQEFKEAIFSTLGWTVTFIPNGK 606
                 ***************************9999999999******9******************************************************* PP

         MAD 594 yRltSmYaeekedallfklsesne.sklkLletp...fSrtleelidlhlaeqksiPaflsalTLeLf 657
                  R+ S++  +++d    +   ++e +++k  + p   f+r + + i +++ e+  iP+fl+alTLe  
  CCE26796.1 607 MRVESTFFPSQTDEHENSIVFDGErGTMKVGGGPksaFARRIGDQISFWVREKGCIPGFLAALTLEFY 674
                 *******7777776655555588889****8755333889**************************86 PP

>> DUF2353  Uncharacterized coiled-coil protein (DUF2353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9  37.4       2.9   1.3e+04      17     180 ..       8     197 ..       6     227 .. 0.67
   2 ?   -5.6  14.8         4   1.8e+04      54     163 ..     152     261 ..     140     272 .. 0.67
   3 ?   -4.3  18.7         2   8.9e+03       4     144 ..     243     413 ..     240     421 .. 0.55
   4 !   19.1   4.9   1.5e-07   0.00066      26     151 ..     409     535 ..     405     541 .. 0.83
   5 ?   -3.6   0.2       1.2   5.6e+03     205     231 ..     559     585 ..     555     592 .. 0.72

  Alignments for each domain:
  == domain 1  score: -4.9 bits;  conditional E-value: 2.9
     DUF2353  17 eLekcrqerdqyklmaeqLqerlsalkkqleeekakaadlkee...................kekekklsqlleesreenkalkleveeLrqklkeaqg 96 
                 e ek+++e + +k+ + +Lq r+++ ++++e + +++++  e+                    +   ++ ++ +e  e +++l  e+++L  k +eaq+
  CCE26796.1   8 EYEKYKKEIEALKAEIGTLQYRMQTAEQEKEIALSQQSNRMEQarrreqeelhqrqaaeaqqAKAVDQVEAVKAELEESKERLAAEAKALERKAREAQD 106
                 6788888888888888888888887665554433333333223578888899999988655333444455556677788999***************** PP

     DUF2353  97 DiklLReqlarqrlglkdedlletrhss.....aeereelvkqlEklkekiqqlerdlkavldekee..lvterdaykeKaerLnqeLnvi 180
                   +lL eql++  ++ +d   + +++ +       + ++ +++lE+  +  ++  ++ ++++ eke    + e d  + Ka+  + e   i
  CCE26796.1 107 EAQLLQEQLEDLSTAKDDAARIADKKLNdmqllVTSLQSSIEELEQESQVREDNVQQAHSLIAEKEShiAKLEADVLRLKAQSGDAETMGI 197
                 ******8888877776666666655443333335666777777777666666666666677777776223568888888887666555555 PP

  == domain 2  score: -5.6 bits;  conditional E-value: 4
     DUF2353  54 adlkeekekekklsqlleesreenkalkleveeLrqklkeaqgDiklLReqlarqrlglkdedl.letrhssaeereelvkqlEklkekiqqlerdlka 151
                 ++ + ++++ ++  +l++e   +  +l+ +v  L+ +  +a+  + +++ +l++q ++++  ++  +++ +++++ +++ k++E ++e ++ l+r l++
  CCE26796.1 152 QESQVREDNVQQAHSLIAEKESHIAKLEADVLRLKAQSGDAET-MGIIKRELTEQVQHIRALEAtNRDQLIELKHLRSVSKAVEVVEEEKRTLQRRLQS 249
                 2223336667778889999999999999999999999999986.5555545555554444444304455555777777888899999999999999999 PP

     DUF2353 152 vldekeelvter 163
                 +     el+  r
  CCE26796.1 250 TETLETELAESR 261
                 877777766555 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 2
     DUF2353   4 lesKveALliLskeLekcrqerdqyk....lmaeqLqerlsalkkqleeekakaadlkee.................kekekklsqlleesreenkalk 81 
                 l+ + +    L+ eL+++r +r +++    + a  L++ l++   +  + +a+a+ l ee                  + ++++ +ll++   e  +lk
  CCE26796.1 243 LQRRLQSTETLETELAESRLQRQRLQderlAWAAYLKNSLESGDDEFDSPEAMARALVEErlttasyveqlgalraeMSAQQNTLRLLQD---ERAQLK 338
                 555555555566666665555554432211234445555555555554444444444444555555555555553333334444444443...334455 PP

     DUF2353  82 leveeLrqklkeaqgDiklLR............eqlarqrlglkdedlletrhssaeereelvkqlEklkekiqq 144
                  +ve+ +     +  D   +R            e l  q ++++ded   + + + + r+  +++lE l  ++++
  CCE26796.1 339 DQVESAKTTAGTLSTDKARMRvdrqrilalkevEYLRAQVKAFDDEDQTMQPENHDDTRSVRIQELEALVDQYKS 413
                 5666666666666666666666666666666766666777778889988888999999999******99877664 PP

  == domain 4  score: 19.1 bits;  conditional E-value: 1.5e-07
     DUF2353  26 dqyklmaeqLqerlsalkkqleeekakaadlkee.kekekklsqlleesreenkalkleveeLrqklkeaqgDiklLReqlarqrlglkdedlletrhs 123
                 dqyk  ++ L+++lsa++  ++  + +  +  ++ + ++ + ++ l +  ++n++l+++v +L+ k++ +++D  + Reql   + + +   +l+ r  
  CCE26796.1 409 DQYKSEVQSLHSELSAMEPASAGISPQPVTGAKRpHAEDDEAQEQLGQLSRKNRKLQEDVTTLHTKVAMLEKDLSANREQLSAAKEQSS-TRILSLRSN 506
                 9*****************99999988877655444889999999**********************************99999987755.556888777 PP

     DUF2353 124 saeereel.vkqlEklkekiqqlerdlka 151
                 +  e e +  + lE lk+ +++l ++l++
  CCE26796.1 507 PTSEFEAIkRSTLEALKRENSDLLTQLRS 535
                 76665554145799999999999888876 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 1.2
     DUF2353 205 lkqleeEkelakqtlskYksllekkkn 231
                 +  ++ E   a+++++++k++  +k +
  CCE26796.1 559 IAAAKAETASAQKSAKRLKEVWGSKSQ 585
                 667788888888899888888765554 PP

>> CEP63  Centrosomal protein of 63 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0  11.2       2.3   1.1e+04      53     109 ..      11      68 ..       6      75 .. 0.49
   2 ?    1.1  35.0     0.068   3.1e+02      28     219 ..      74     272 ..      67     276 .. 0.70
   3 !   15.8  10.7   2.2e-06    0.0098      71     203 ..     301     423 ..     276     431 .. 0.79
   4 !    4.7   4.8    0.0055        25     146     220 ..     449     523 ..     441     593 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.3
       CEP63  53 ekhkEvgllrqqleelekekqelvakyeqqlqklreelsklkr.syekLqrkqlkear 109
                 + +kE++ l+ ++  l+ + q ++++ e  l++  + +++ +r   e L+++q  ea+
  CCE26796.1  11 KYKKEIEALKAEIGTLQYRMQTAEQEKEIALSQQSNRMEQARRrEQEELHQRQAAEAQ 68 
                 3445555555555555555555555555555555555544433133455555555554 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.068
       CEP63  28 aqtraletrlkireeeLasarnaldekhkE....vgllrqqleelekekqelvakyeqqlqklreelsklkrsyekL.qrkqlkeareke.akskeedr 120
                 +q++a+++ l+   e La+  +al++k +E     +ll++qle+l ++k ++++  +++l+ ++  +  l+ s e L q  q++e ++++ +    e++
  CCE26796.1  74 DQVEAVKAELEESKERLAAEAKALERKAREaqdeAQLLQEQLEDLSTAKDDAARIADKKLNDMQLLVTSLQSSIEELeQESQVREDNVQQaHSLIAEKE 172
                 6899***********************8751111678999*************************************56689**999876155568899 PP

       CEP63 121 velsrlnskleefrqkslewekqrlqyq......kqvasleaqrkaLaekleliqsaaykvqlekrkqkLesveldsqseiqrLrs.kleraqdtleaq 212
                 +++++l+  +   +++s + e+  + ++      +++ +lea ++    +l++++s +  v++ + ++         q ++q  ++ + e a+++l++q
  CCE26796.1 173 SHIAKLEADVLRLKAQSGDAETMGIIKRelteqvQHIRALEATNRDQLIELKHLRSVSKAVEVVEEEKR------TLQRRLQSTETlETELAESRLQRQ 265
                 999999999999999999988654433311111467888888766555556777774444443332222......222222222221234455555555 PP

       CEP63 213 elelerL 219
                  l+ erL
  CCE26796.1 266 RLQDERL 272
                 5555555 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 2.2e-06
       CEP63  71 ekqelvakyeqqlqklreelsklkrsyekLq..rkqlkearekeakskeedrvelsrlnskleefrqkslewekqrlqyqkqvasleaqrkaLaeklel 167
                 e++  +a y +ql  lr+e+s+ +++ + Lq  r qlk++ e             ++ +       +  +  ++qr++  k+v+ l aq ka  ++ ++
  CCE26796.1 301 EERLTTASYVEQLGALRAEMSAQQNTLRLLQdeRAQLKDQVE------------SAKTTAGTLSTDKARMRVDRQRILALKEVEYLRAQVKAFDDEDQT 387
                 45557889******************9999833445665552............2222222222234446789************************** PP

       CEP63 168 iqsaaykvqlekrkqkLesveldsqseiqrLrskle 203
                 +q   +   ++ r q+Le    + +se+q L+s+l 
  CCE26796.1 388 MQPENHDDTRSVRIQELEALVDQYKSEVQSLHSELS 423
                 ******************99999**********996 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.0055
       CEP63 146 qyqkqvasleaqrkaLaekleliqs..aaykvqlekrkqkLesveldsqseiqrLrskleraqdtleaqelelerLr 220
                   q+q+  l  ++++L+e + ++++  a  +++l+  +++L  ++ +s+++i  Lrs++ +  + +++  le   L+
  CCE26796.1 449 EAQEQLGQLSRKNRKLQEDVTTLHTkvAMLEKDLSANREQLSAAKEQSSTRILSLRSNPTSEFEAIKRSTLE--ALK 523
                 5699*****************9999888889999887777999999**************999999998775..333 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9  14.5     0.023     1e+02      25      99 ..      10      95 ..       7     112 .. 0.71
   2 ?    0.6   6.5     0.058   2.6e+02      29      97 ..     106     185 ..     100     211 .. 0.69
   3 ?   -1.7   3.7      0.29   1.3e+03      47      90 ..     231     270 ..     199     302 .. 0.66
   4 ?   -0.0   0.7     0.089     4e+02      24      84 ..     306     366 ..     302     394 .. 0.75
   5 ?   14.5   1.0   3.4e-06     0.015      16     103 ..     400     498 ..     385     503 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.023
        Tho2 25 eqYekeieklkseieel............akdr.sderaaakk.kkkekkrlkeliekLeeEkkeqiehvekvkkrLkeekkswfknde 99
                e+Y+keie lk+ei +l                 s++++++++ +++e+++l +++++ e+ +++   +ve+vk++L+e k+++ ++++
  CCE26796.1 10 EKYKKEIEALKAEIGTLqyrmqtaeqekeI--AlSQQSNRMEQaRRREQEEL-HQRQAAEAQQAKAVDQVEAVKAELEESKERLAAEAK 95
                79*****************99998765431..23333344444044445555.5566778889999999************99988333 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.058
        Tho2  29 keieklkseieelakdrsde....raaakkkkkekkrlkeliekLeeEkkeqiehvekvkkrLkeekkswfk.......n 97 
                 +e + l++++e+l+++++d+    +++ ++ +     l++ ie+Le+E +  + +v++ ++ ++e+ ++  k        
  CCE26796.1 106 DEAQLLQEQLEDLSTAKDDAariaDKKLNDMQLLVTSLQSSIEELEQESQVREDNVQQAHSLIAEKESHIAKleadvlrL 185
                 57778888888886666665200122223333334566999*******************99999999988755555542 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.29
        Tho2  47 deraaakkkkkekkrlkeliekLeeEkkeqiehvekvkkrLkee 90 
                 ++ +  +++k++ +r  +  e+Le+E++e   ++++    L+ e
  CCE26796.1 231 KAVEVVEEEKRTLQRRLQSTETLETELAESRLQRQR----LQDE 270
                 224556677777788888889999999887766554....4444 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.089
        Tho2  24 keqYekeieklkseieelakdrsderaaakkkkkekkrlkeliekLeeEkkeqiehvekvk 84 
                 +++Y +++  l++e+++ ++  +  +++ ++ k++ +  k+++ +L+++k++    +++++
  CCE26796.1 306 TASYVEQLGALRAEMSAQQNTLRLLQDERAQLKDQVESAKTTAGTLSTDKARMRVDRQRIL 366
                 6789999999999888874444433677777788888888899999999988877777665 PP

  == domain 5  score: 14.5 bits;  conditional E-value: 3.4e-06
        Tho2  16 slyDiyvpkeqYekeieklkseieel............akdrsde.raaakkkkkekkrlkeliekLeeEkkeqiehvekvkkrLkeekkswfkndekk 101
                  ++++   ++qY++e++ l+se++++            +  + +  +a+ ++ +++  +l +   kL+e+ ++  ++v++ +k L+ +++++ +++e++
  CCE26796.1 400 RIQELEALVDQYKSEVQSLHSELSAMepasagispqpvT--GAKRpHAEDDEAQEQLGQLSRKNRKLQEDVTTLHTKVAMLEKDLSANREQLSAAKEQS 496
                 6777888899******************99999988632..2333378899999999999***************************999988855555 PP

        Tho2 102 kk 103
                 ++
  CCE26796.1 497 ST 498
                 44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2853  (0.159128); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                       185  (0.0103185); expected 17.9 (0.001)
Passed Fwd filter:                       109  (0.00607954); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 2.63u 0.43s 00:00:03.06 Elapsed: 00:00:00.67
# Mc/sec: 3061.68
//
Query:       CCE26797.1  [L=229]
Description: uncharacterized protein CPUR_00266 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.9    8.2  10.3        1.3    9.3   6.2    2.1  2  DUF4611   Domain of unknown function (DUF4611)


Domain annotation for each model (and alignments):
>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1     0.046   8.3e+02      66      80 ..      37      51 ..      24      60 .. 0.45
   2 ?    9.3   6.2   7.1e-05       1.3      38      80 ..     186     228 ..     166     229 .] 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.046
     DUF4611 66 eegededdeeeekni 80
                +++++  +++ee+n 
  CCE26797.1 37 KDENNRREAQEEENC 51
                222222222333333 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 7.1e-05
     DUF4611  38 lreevsellstlveqeaqddvaaagdeeeegededdeeeekni 80 
                 lr++ ++ ++ +   +  d+v+++g++ e+ged +dee+e+++
  CCE26797.1 186 LRDRLADDINRISVPQDGDEVEEDGEDGEDGEDGEDEEDEEEV 228
                 6777777777776667789999999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.49
# Mc/sec: 1399.77
//
Query:       CCE26798.1  [L=170]
Description: uncharacterized protein CPUR_00267 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1233.91
//
Query:       CCE26799.1  [L=167]
Description: uncharacterized protein CPUR_00268 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1352.78
//
Query:       CCE26800.1  [L=527]
Description: related to proline transport helper PTH1 C. albicans [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   9.1e-124  413.1   0.0   1.3e-123  412.6   0.0    1.2  1  Tam41_Mmp37  Phosphatidate cytidylyltransferase, mitochondria
     0.0033   17.8   0.0          5    7.6   0.0    3.0  3  DUF3398      Domain of unknown function (DUF3398)


Domain annotation for each model (and alignments):
>> Tam41_Mmp37  Phosphatidate cytidylyltransferase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.6   0.0  1.4e-127  1.3e-123       2     323 .]     135     506 ..     134     506 .. 0.98

  Alignments for each domain:
  == domain 1  score: 412.6 bits;  conditional E-value: 1.4e-127
  Tam41_Mmp37   2 ekilkkfpapiryafaYGSgvfkqkgy.....................kkkkkkkkmiDlifavsdpeewHslNlkqnpsHYsllrrlgskliskvqe 78 
                  + +l++f+api y+faYGSgvf+q +                      k++k + kmiD+if+vs++++wHs+N++q+++HYs +++lgs l+s+vq+
   CCE26800.1 135 RLMLRQFHAPIIYCFAYGSGVFPQGDLsrsvteaefravhpkppealvKAQKGSPKMIDFIFGVSHTQHWHSINMRQHRDHYSGIASLGSGLVSSVQN 232
                  6789*********************889*********************************************************************8 PP

  Tam41_Mmp37  79 klgagvyfnplvevngkliKYGVvsledllkDLleWdtLYlaGRlqKPvkilrddarirlanqvNlksAlraaLlllpekfteeeLyetiasLSYlGD 176
                   +gagvyfnp+vevng+liKYGV+s+++l+kDL++Wd+LYlaGRlqKPvkilrd++++rlanq+Nl++A+r+aLlllp +f+e+eLy+tia+LSY+GD
   CCE26800.1 233 -YGAGVYFNPFVEVNGMLIKYGVTSIDNLVKDLTTWDNLYLAGRLQKPVKILRDHPQVRLANQHNLIAAVRTALLLLPPQFSETELYSTIAGLSYMGD 329
                  .************************************************************************************************* PP

  Tam41_Mmp37 177 lRmklggEnknKvkniVekqleefrelYkplleelenvellekekekeee........kkleqdlspearaellrkLPkklrskllskyekkl..... 261
                  +Rm+l++Enk+Kv+niV++++ +fr+lY+pl+++l+nv+++++ + ++e+        + l+qd++p++ra+ +r+LPk++rs+l+++y+kk+     
   CCE26800.1 330 PRMALPTENKSKVANIVNHNVVHFRRLYAPLIKTLPNVDFTTSCRLDDEDwilnpsadSILQQDMDPAKRANSVRRLPKSFRSRLYFQYQKKFaiprg 427
                  ******************************************999998889******9999************************************* PP

  Tam41_Mmp37 262 ...............skkkkdeeeflkkiakde..elaeevkkaikkivaksslkqslkgvltaGvvksvkYaleKlkk 323
                                 s k+++++ f+k+i +d+  +l+++v+++ik++v+++s +qs+kg+++ G +++++Y++eK +k
   CCE26800.1 428 efndmmqahnddvstSIKRRQGGPFEKRILQDDpeHLRQVVSQVIKQTVSWPSSVQSAKGLIMGGWSRTIRYLSEKYSK 506
                  **************989999***********99645****************************************987 PP

>> DUF3398  Domain of unknown function (DUF3398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00055         5      30      82 ..     155     211 ..     153     222 .. 0.68
   2 ?   -3.3   0.0       1.3   1.2e+04      51      71 ..     333     353 ..     330     355 .. 0.80
   3 !    6.8   0.0     0.001       9.1      15      69 ..     419     473 ..     415     488 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00055
     DUF3398  30 lfPqdDvevkvlpreirtlqstvPeeaekeldslVrecik.....tYtsdwkvveyky 82 
                  fPq D++ +v++ e r +++  Pe a+ ++++   + i+     ++t+ w+ +++++
  CCE26800.1 155 VFPQGDLSRSVTEAEFRAVHPKPPE-ALVKAQKGSPKMIDfifgvSHTQHWHSINMRQ 211
                 5*******************99986.33444433333332111225788888887765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.3
     DUF3398  51 tvPeeaekeldslVreciktY 71 
                  +P+e+++++ + V++++  +
  CCE26800.1 333 ALPTENKSKVANIVNHNVVHF 353
                 679999999999999998665 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.001
     DUF3398  15 qkktqierdplrelllfPqdDvevkvlpreirtlqstvPeeaekeldslVrecik 69 
                 qkk +i r+   ++++  +dDv++++ +r+    ++ + +++ ++l++ V + ik
  CCE26800.1 419 QKKFAIPRGEFNDMMQAHNDDVSTSIKRRQGGPFEKRILQDDPEHLRQVVSQVIK 473
                 777888999999****************************999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       965  (0.0538234); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 3915.01
//
Query:       CCE26801.1  [L=850]
Description: uncharacterized protein CPUR_00270 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-64  217.6   0.0    4.1e-64  216.6   0.0    1.6  2  muHD       Muniscin C-terminal mu homology domain
    1.3e-08   35.0   0.1    8.9e-08   32.3   0.0    2.3  2  FCH        Fes/CIP4, and EFC/F-BAR homology domain
  ------ inclusion threshold ------
      0.095   11.7   0.6       0.14   11.1   0.6    1.2  1  Clusterin  Clusterin
        1.6    9.1   5.7        1.2    9.5   3.8    1.7  2  Muted      Organelle biogenesis, Muted-like protein


Domain annotation for each model (and alignments):
>> muHD  Muniscin C-terminal mu homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.6   7.2e+03     222     242 ..     451     472 ..     440     489 .. 0.64
   2 !  216.6   0.0   9.2e-68   4.1e-64       1     262 [.     578     849 ..     578     850 .] 0.90

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.6
                 S----EEEEE.ESSS-T....T CS
        muHD 222 srlgislleq.kkeedPfaaee 242
                 +  +++++++ + eedP a+++
  CCE26801.1 451 QLFKLNIQNKpVGEEDPEAKQA 472
                 4466677777788899988553 PP

  == domain 2  score: 216.6 bits;  conditional E-value: 9.2e-68
                 -EEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEE--SSS-----SEEEEEEETGGGEEEEEE-TTTE...EEEETTEEEE-TTTTBT-E.EEEEEEEEE CS
        muHD   1 pgLnasiiEtvnAwFkdgevtkskvvGelaLaynaspaasltlpdkltvrlenfeklekvapNpafvte.ekqkdgeykinlsalarktktvalkYqvh 98 
                 pgL++siiEtv+A+F+dg++t++++ Gela  +++++++++++  ++t+r++nf+kle++ pN+ fv++   ++++++ +nls+l++++   a+ Y+v 
  CCE26801.1 578 PGLQSSIIETVSAVFEDGVITSASIAGELA--FVNNDHETSSEKSHETIRINNFHKLERIGPNRIFVQNaSLEQPDQFALNLSHLTKTS--IAFSYRVF 672
                 79**************************75..677777777789***********************99888999**************..9*****97 PP

                 S.........---SEEEEEEEEE-SSEEEEEEEEEE-TTTT--E.EEEEEEEEEEEB-SS-EEEEEESSS--B-SSS-EEEEE-SSEEEETT---EEEE CS
        muHD  99 adpska...sascPlilkpvWkleehqasviltyslnpslaiasavtLenlvlvvnldgsratsvqskPqatfskeksrvtWklpeleltsdsdegkll 194
                 a +s+     +++P++l+pvWk ++++  ++l+y+lnp++++a++vtL+n+vlv++++g  + ++q+kP++t+ k+k+ v+W+l +++lt d   +k++
  CCE26801.1 673 AAESDPlqlGQHAPIALTPVWKPQNDKLGLLLQYQLNPASNFAAPVTLHNVVLVAKYEGR-SIGAQTKPSGTHLKDKHLVYWRLGDVTLTMDA--HKIV 768
                 76665433389***********************************************99.9*******************************..7*** PP

                 EEEEESS---.-SS-EEEEEEE--.-S-SS----EEE.......EE.ESSS-T.......T----EE-EEEEEEEEEEEE. CS
        muHD 195 arfsteesae.kpgkVevkFevee.gatlsrlgisll.......eq.kkeedPfa...aeegktwkevptkrklvaGkYls 262
                 +r++ +++    p+++e+++e+++ g++l+++gis++        +  +++dPfa   ++++++w +vp++r+lv+GkY +
  CCE26801.1 769 CRITGADGVCpLPSHIEARWEYAAsGDELTGSGISISrlsdldkGKgPSDDDPFAdagSSSSQAWVDVPVVRRLVSGKYEG 849
                 ****9988777**********97424555555555555599998455999*****9998899*****************86 PP

>> FCH  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0     2e-11   8.9e-08       4      76 ..      24      95 ..      22      96 .. 0.92
   2 ?   -0.7   0.0       0.4   1.8e+03      34      62 ..     125     152 ..     122     182 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2e-11
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----TT-.....HHHHHHHHHHHHHHHHHHHHHH CS
         FCH  4 vlqkrleqgialledlqeflkeRaeiEkeYakkLqkLakkylkrrkkkseestlvtawtvlleeteklaqshl 76
                +l++r++   + + d++++l+eR  +E++Y  +L++La++ ++ + + se + ++++w+ +++ +e +aqsh 
  CCE26801.1 24 TLNDRVKRISKVNLDIADWLQERRRVEEQYVLSLRRLAQSSKGPS-SPSELGVFQPSWSRVINAVETIAQSHH 95
                6899999999****************************9999865.45599*********************6 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.4
                 HHHHHHHCT----TT-.....HHHHHHHH CS
         FCH  34 akkLqkLakkylkrrkkkseestlvtawt 62 
                 + + ++Lakk++k + kk++++++++ w+
  CCE26801.1 125 SSNFSALAKKMEKPG-KKDNRAAIQQEWE 152
                 566689999999976.5556666666555 PP

>> Clusterin  Clusterin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   3.2e-05      0.14     148     240 ..      75     180 ..      35     210 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.2e-05
   Clusterin 148 qledsfsqlssdvdslfnrslkvfkqmqqefdqafqsaflsdldlteee...flpalsk........arksrllrsl..glenlfqpffdfsrsvfesv 233
                   + s+s++ + v+++ ++  ++++++++ ++q+++++++++  + ++e   +++al+k         +++ + +++    + +f+ + ++ +s ++++
  CCE26801.1  75 VFQPSWSRVINAVETIAQSHHMFAERIEEDLEQPLRTYQQRQDYVHMHEmssNFSALAKkmekpgkkDNRAAIQQEWesTAPYIFEKLQEVDESRVNHL 173
                 555566666666666666666666666666666666665544433333323422222223333333223333444444444555555555555555555 PP

   Clusterin 234 sevvtet 240
                 ++++t+ 
  CCE26801.1 174 RDILTQY 180
                 5555555 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       3.4   1.5e+04     105     127 ..      30      52 ..      15      61 .. 0.48
   2 ?    9.5   3.8   0.00027       1.2      46     143 ..      88     184 ..      80     186 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.4
       Muted 105 erkaeweeflkelqekkeevDee 127
                 +r ++++  + +  +++++v+e+
  CCE26801.1  30 KRISKVNLDIADWLQERRRVEEQ 52 
                 23333333333333444444444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00027
       Muted  46 klvnelkeqllpkclesmkenLselnkkleaalekverllqkeleeekrkseqlqekeeerkaeweeflkelqekkeevDeefeekveelkekYsele 143
                 +++ + ++   +++ e +++ L++ +++ ++  ++ e   + ++ ++k+++   + ++ + ++ewe+    + ek +evDe+  + ++++ ++Y++ e
  CCE26801.1  88 ETIAQSHHMFAERIEEDLEQPLRTYQQR-QDYVHMHEMSSNFSALAKKMEKPGKKDNRAAIQQEWESTAPYIFEKLQEVDESRVNHLRDILTQYQTHE 184
                 4555555566677777788888888888.78888877777778888888999999999************************************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 5746.71
//
Query:       CCE26802.1  [L=381]
Description: related to cyclin-supressing protein kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-37  127.9   0.0    6.1e-37  127.4   0.0    1.2  1  Pkinase      Protein kinase domain
    1.7e-12   47.2   0.0    2.2e-12   46.8   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0051   16.8   0.1       0.01   15.8   0.1    1.5  1  APH          Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.13   11.6   0.0         11    5.3   0.0    2.3  2  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   0.0   1.4e-40   6.1e-37       9     261 ..      92     377 ..      84     380 .. 0.78

  Alignments for each domain:
  == domain 1  score: 127.4 bits;  conditional E-value: 1.4e-40
                 EESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.....CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHH...HHSS--HH CS
     Pkinase   9 eGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.....hpnivrlyevfeekdely.lvleyveggeladlle...rkgslsee 98 
                 eG +++Vy+          A+K+i + +  + +  + +rE ++l +l+      ++ivrl+ +f++++++y l + y +  +l+ +l+    ++  + +
  CCE26802.1  92 EGVTSEVYRSD------SHALKVITTPRVLEPH--NPQREASVLTELHalqppPDHIVRLITTFRDQESRYvLAFPYHS-LTLDAVLSqrnPSVLPPTT 181
                 55555555544......5677777777666543..355666666555544344789**********8888846677777.5599999964222335667 PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCS......BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHH CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesssk......ltsfvgtseYlAPEvl.keneyskkvDvWslGvilye 189
                 ++ +i++ il+gl+++H++gi+HrD+Kp+ iL+d  +g   i+DFG + + + s +      +   +gt  Y+APEvl  ++ y+++vD+W+ Gv+l+e
  CCE26802.1 182 DVARIFEDILHGLAFIHRRGILHRDIKPSAILLDsPSGPALISDFGTVWHPRLSAQsepasdKILDIGTGPYRAPEVLfAHKAYGAPVDMWATGVMLAE 280
                 9*********************************77888*******886544443344665566679***********99******************* PP

                 HHHS..S-STTTSSHHHHHHHHHHT...HHHHHHHCT.SHH...HHHTTS.......................-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 190 lltg..kppfsgekgkekvekeldq...lekilkilg.etkeklpeasei.......................seeakdllkkllkkdpkkRltaeell 259
                  +t   +ppf++++ +e    + +q   + +i+k+lg +t+e++pea+++                          ++dl+  ll+ + ++R+taee+ 
  CCE26802.1 281 AITSppRPPFESRSAHE----DGNQlglILSIIKTLGtPTEETWPEAKDFrvspfelwttfpqrtweeilphvHAPFRDLVAGLLRFESRDRMTAEEAS 375
                 **985578999444333....44442226677777779999********************************************************98 PP

                 TS CS
     Pkinase 260 qh 261
                 ++
  CCE26802.1 376 KS 377
                 75 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0     5e-16   2.2e-12      38     205 ..     116     288 ..      84     314 .. 0.75

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 5e-16
                  TTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSB.HHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGE CS
  Pkinase_Tyr  38 eeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekeklt.lkdllsfalqvAkGmeyLeskklvHrdlaarNv 134
                  e ++ ++++++l+e++ ++    ++iv+l+    ++e+ +++    ++ +L+  L +++ + l  ++d+ ++  ++ +G+++++++ ++Hrd+    +
   CCE26802.1 116 EPHNPQREASVLTELHALQP-PPDHIVRLITTFRDQESRYVLAFPYHSLTLDAVLSQRNPSVLPpTTDVARIFEDILHGLAFIHRRGILHRDIKPSAI 212
                  33444446777777777765.4579*********8888887777777779*******97777652678999*************************** PP

                  EEEETT.EEEE-STTTHEETTTSSEE...EETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHHHHHHHTTSSGT CS
  Pkinase_Tyr 135 Llsenk.vvkisDfGLardiekddey...vkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgesp 205
                  Ll++ +  + isDfG   +   + +    ++k        + apE+l+++k +    D+W+ Gv+l E +t   +p
   CCE26802.1 213 LLDSPSgPALISDFGTVWHPRLSAQSepaSDKILDIGTGPYRAPEVLFAHKaYGAPVDMWATGVMLAEAITSPPRP 288
                  ***955499******9876644444411133334445568******9987769999************99865444 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.3e-06      0.01      99     195 ..     124     228 ..     109     231 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.3e-06
                 HHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC..HHHHHHHH..........HHHHHHHH--S...SS-EEEE-SS-SGGGEEEC. CS
         APH  99 geflaalhqvdpaalpladflaqdlellrqlesatarllaselld..lleeleeq..........vlaalaallpg...elptvllHgDlhpgNllvd. 181
                 +++l +lh++     p++d   + ++ +r+ es+    la  ++   l + l ++          v++ +++ l+g     ++++lH+D++p  +l+d 
  CCE26802.1 124 ASVLTELHAL----QPPPDHIVRLITTFRDQESR--YVLAFPYHSltLDAVLSQRnpsvlppttdVARIFEDILHGlafIHRRGILHRDIKPSAILLDs 216
                 68999*****....77777777888888888888..56666666663334444449999999999999999999999999******************8 PP

                 ..TTEEEEE---TT CS
         APH 182 pddgrvtGviDfed 195
                 p ++ +  + Df++
  CCE26802.1 217 PSGPAL--ISDFGT 228
                 887887..888887 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0024        11     158     195 ..     195     233 ..     184     277 .. 0.82
   2 ?    4.0   0.0    0.0057        26     232     288 .]     298     368 ..     292     368 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0024
  Kinase-like 158 anLqakglvhgkftvdnllld.ekgglmlggftaLvrag 195
                  a ++ +g++h ++++  +lld + g+  + +f+  +   
   CCE26802.1 195 AFIHRRGILHRDIKPSAILLDsPSGPALISDFGTVWHPR 233
                  56799***************9568999999*99988755 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0057
  Kinase-like 232 daWqlGlviyriwclklPltlateeakeew..............kfklck.kipekvkaLlkkfLqlsqedR 288
                  d  qlGl    i  l  P+++ ++eak  +               ++ +  ++  + + L++++L+++++dR
   CCE26802.1 298 DGNQLGLILSIIKTLGTPTEETWPEAKD-FrvspfelwttfpqrTWEEILpHVHAPFRDLVAGLLRFESRDR 368
                  55699**999***************974.55888899999999988888856677899999*****999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2926.69
//
Query:       CCE26803.1  [L=1622]
Description: uncharacterized protein CPUR_00272 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-09   36.0   9.1    1.7e-08   34.7   9.1    1.8  1  zf-RING_2     Ring finger domain
    3.4e-06   27.1   8.6      1e-05   25.6   8.6    1.8  1  FANCL_C       FANCL C-terminal domain
    4.2e-05   23.7   6.8    0.00012   22.3   6.8    1.8  1  zf-rbx1       RING-H2 zinc finger domain
    0.00026   21.1   8.0    0.00071   19.7   8.0    1.8  1  RINGv         RING-variant domain
    0.00045   20.2   2.8     0.0012   18.9   2.8    1.6  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
     0.0014   18.5  10.4     0.0028   17.5  10.4    1.6  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
      0.005   16.4   5.2     0.0096   15.5   5.2    1.4  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
     0.0073   16.2   3.0     0.0073   16.2   3.0    2.0  2  C1_1          Phorbol esters/diacylglycerol binding domain (C
  ------ inclusion threshold ------
      0.018   14.9   8.5      0.039   13.8   8.5    1.6  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
      0.037   14.3   8.1      0.077   13.3   8.1    1.6  1  zf-RING-like  RING-like domain
       0.04   13.8   5.8      0.088   12.7   5.8    1.6  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
        1.4    8.9   6.4        3.3    7.7   6.4    1.5  1  zf-RING_9     Putative zinc-RING and/or ribbon
        2.4    8.1   6.9        8.4    6.3   6.9    1.9  2  Prok-RING_4   Prokaryotic RING finger family 4
        2.8    7.9   7.4        6.3    6.8   7.4    1.6  1  PHD           PHD-finger
        7.5    6.6   9.1         15    5.7   9.1    1.5  1  zf-RING_5     zinc-RING finger domain


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   9.1   1.4e-11   1.7e-08       2      44 .]    1560    1607 ..    1559    1607 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.4e-11
   zf-RING_2    2 eCpICleelssadsvl..ll.pCgHvfhreClerwlrssst..CPlCr 44  
                  eC+IC++ +s++++++  ++  C+  fhr+Cl +w+++s++  CPlCr
  CCE26803.1 1560 ECAICYSIISEDKRMPdkKCtTCNNLFHRTCLYKWFQTSNQnsCPLCR 1607
                  8*****99999999997633469999*********99999999****9 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   8.6   8.7e-09     1e-05       2      47 ..    1558    1601 ..    1557    1612 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 8.7e-09
                  --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSS CS
     FANCL_C    2 eveCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrslkes 47  
                  + eC iCy+   ++ ++pd+ C    Cn+ fH++CL+ W+++ ++ 
  CCE26803.1 1558 QSECAICYSIISEDKRMPDKKCT--TCNNLFHRTCLYKWFQTSNQN 1601
                  679*******************5..8**************997654 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   6.8     1e-07   0.00012       3      55 .]    1561    1607 ..    1555    1607 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1e-07
     zf-rbx1    3 CaiCrneleeacieckapgdeecpvvlGeCgHaFHlhCiskWlkt..rkvCPlcr 55  
                  CaiC + ++e     k+  d    +++ +C+  FH  C+ kW++t  +++CPlcr
  CCE26803.1 1561 CAICYSIISE----DKRMPD----KKCTTCNNLFHRTCLYKWFQTsnQNSCPLCR 1607
                  5555433322....223333....34568****************98999****8 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   8.0   5.9e-07   0.00071       1      48 []    1561    1606 ..    1561    1606 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.9e-07
                  ETTTTEE-SSSS--B-SS--STCCCSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv    1 CriCleeeeeseplispCkCrGslklvHesClekWldekeantqCeiC 48  
                  C iC+   +e++  +   kC+  ++l+H++Cl kW+++ +++++C +C
  CCE26803.1 1561 CAICYSIISEDKR-MPDKKCTTCNNLFHRTCLYKWFQT-SNQNSCPLC 1606
                  9999999888884.44569*******************.********* PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   2.8   9.7e-07    0.0012      27      79 ..    1561    1608 ..    1546    1612 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9.7e-07
                  T-SBTTS--TTCSTTTTTS-EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSS CS
  zf-ANAPC11   27 crvsfdGtcpsckfpGddcplvlGkckhnfhlhcilkwletetskglcpmcrq 79  
                  c + +     + ++p  +c+    +c+  fh  c++kw++t+  ++ cp+cr+
  CCE26803.1 1561 CAICYSIISEDKRMPDKKCT----TCNNLFHRTCLYKWFQTS-NQNSCPLCRN 1608
                  44446666777778888885....7**************986.6889*****7 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5  10.4   2.4e-06    0.0028       1      41 []    1561    1606 ..    1561    1606 .. 0.98

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.4e-06
                  -TTT-S--SS-E......E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4    1 CpiCleeakepn.....elleCkHsfCskCirkilksrkkvkCPlC 41  
                  C+iC + ++e +     + ++C+  f+++C+ k+ +++++++CPlC
  CCE26803.1 1561 CAICYSIISEDKrmpdkKCTTCNNLFHRTCLYKWFQTSNQNSCPLC 1606
                  **********999********************************* PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   5.2     8e-06    0.0096       4      46 ..    1558    1604 ..    1555    1606 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 8e-06
  Zn_ribbon_17    4 lksCayCelavkgrvvl....cgvCeHvlHasCarewfenddlaeCp 46  
                    + +Ca+C   +     +    c+ C+   H  C+ +wf++ ++++Cp
    CCE26803.1 1558 QSECAICYSIISEDKRMpdkkCTTCNNLFHRTCLYKWFQTSNQNSCP 1604
                    6789999877765443323339************************9 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   3.0   6.1e-06    0.0073       9      44 ..    1556    1592 ..    1548    1601 .. 0.90
   2 ?   -1.9   0.0       2.8   3.3e+03       7      21 ..    1596    1610 ..    1591    1616 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.1e-06
                  SS--B-TTT-SB--S.SSS-EEEETTT--EE-CCCCT CS
        C1_1    9 kqptfCkhCgeflwg.kekqglkCswCkllvHkkChe 44  
                  + ++ C+ C +++++ k+++  kC++C+ l+H  C+ 
  CCE26803.1 1556 QGQSECAICYSIISEdKRMPDKKCTTCNNLFHRTCLY 1592
                  56788********999*******************85 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.8
                  --SS--B-TTT-SB- CS
        C1_1    7 nfkqptfCkhCgefl 21  
                  ++++++ C  C++++
  CCE26803.1 1596 QTSNQNSCPLCRNPI 1610
                  4468999****9998 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   8.5   3.2e-05     0.039       1      40 []    1560    1606 ..    1560    1606 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.2e-05
  zf-C3HC4_2    1 kCpiCldmlkdpsvvt.....pCgHvfCqkCilrsLeekn..eCPlC 40  
                  +C+iC+  +++  ++       C+  f++ C+ ++ + +n  +CPlC
  CCE26803.1 1560 ECAICYSIISEDKRMPdkkctTCNNLFHRTCLYKWFQTSNqnSCPLC 1606
                  6*******99876653444449*************99888779**** PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   8.1   6.5e-05     0.077       1      43 []    1561    1606 ..    1561    1606 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.5e-05
  zf-RING-like    1 CeaCkeivtqGvr.....CsnesCnvrlHvdCfqhyirthsskkCpkC 43  
                    C++C +i+    r     C+  +Cn  +H  C+ + ++t+++++Cp C
    CCE26803.1 1561 CAICYSIISEDKRmpdkkCT--TCNNLFHRTCLYKWFQTSNQNSCPLC 1606
                    77777777665541111177..778**********************9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   5.8   7.3e-05     0.088       3      48 ..    1559    1611 ..    1557    1613 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.3e-05
                  SB-TTTSS......SBS-EEETTEEEEEE-HHHHHHHHH..TT-B-TTT--B-- CS
  zf-C3HC4_3    3 eeCviCle......rprnvvllpCgHlvlCeeCaekllk..rkkkCpiCrrpie 48  
                  +eC iC++      r  +  +  C+ l +  +C+ k+ +  ++++Cp+Cr pi+
  CCE26803.1 1559 SECAICYSiisedkRMPDKKCTTCNNL-FHRTCLYKWFQtsNQNSCPLCRNPID 1611
                  79*****97776554555667778877.7789*****9999************8 PP

>> zf-RING_9  Putative zinc-RING and/or ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.4    0.0027       3.3     156     202 ..    1559    1607 ..    1554    1609 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0027
   zf-RING_9  156 fiCelCkseellfpfqlktverCekCkavfHkeClkkkekk....ecpkce 202 
                    C +C   +++ + +    ++C++C+++fH++Cl k  ++    +cp c+
  CCE26803.1 1559 SECAICY--SIISEDKRMPDKKCTTCNNLFHRTCLYKWFQTsnqnSCPLCR 1607
                  5688887..4677755666679************86644334456999997 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       3.1   3.7e+03      31      44 ..    1559    1572 ..    1556    1574 .. 0.80
   2 ?    6.3   6.9    0.0071       8.4      14      40 ..    1580    1610 ..    1561    1613 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.1
  Prok-RING_4   31 ssCPlCqrrisksd 44  
                   s C +C + is+++
   CCE26803.1 1559 SECAICYSIISEDK 1572
                   6899**99998775 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0071
  Prok-RING_4   14 epCgHlvCkeCfdsk....dlssCPlCqrri 40  
                     C+ l+ ++C+ ++    + +sCPlC++ i
   CCE26803.1 1580 TTCNNLFHRTCLYKWfqtsNQNSCPLCRNPI 1610
                   6788899999977666443777******876 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.4    0.0053       6.3       2      51 ..    1561    1608 ..    1560    1609 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0053
                  BTTTTS..TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD    2 CavCkk..ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51  
                  Ca+C +  ++d+      C +C++ fH +Cl    +++++ +    C+ C++
  CCE26803.1 1561 CAICYSiiSEDKRMPDKKCTTCNNLFHRTCLYKWFQTSNQNS----CPLCRN 1608
                  999999876666666679************998888666665....999975 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   9.1     0.012        15       1      44 []    1560    1608 ..    1560    1608 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.012
   zf-RING_5    1 hCnkCfeklskeek...fyltsCgHifCekClkkll..ekeavCpiCrk 44  
                  +C +C++ +s++++      t+C   f+ +Cl k +   +++ Cp+Cr+
  CCE26803.1 1560 ECAICYSIISEDKRmpdKKCTTCNNLFHRTCLYKWFqtSNQNSCPLCRN 1608
                  599******55554778899**************999999*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.94u 0.27s 00:00:01.21 Elapsed: 00:00:00.44
# Mc/sec: 11038.88
//
Query:       CCE26804.1  [L=475]
Description: uncharacterized protein CPUR_00273 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3535.05
//
Query:       CCE26805.1  [L=361]
Description: related to ubiquitin fusion degradation protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-65  220.3   0.0    1.4e-65  220.0   0.0    1.1  1  UFD1      Ubiquitin fusion degradation protein UFD1


Domain annotation for each model (and alignments):
>> UFD1  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.0   0.0   7.6e-70   1.4e-65       1     173 []      12     189 ..      12     189 .. 0.99

  Alignments for each domain:
  == domain 1  score: 220.0 bits;  conditional E-value: 7.6e-70
        UFD1   1 feekyrcysvsm..kaereelekggkiiLPpsaLdeLtrlnieyPmlFelsnkkkkksthagVleFtaeegtvylPewmmenlgleegdlveiesvslp 97 
                 f+e+yrcy+v m  ++er+el++g+kiiLPpsaLd++++l++++P+l+e+ n +k +++hagVleF+aeeg+ y+P+wmm +lg++ gd+++i+++sl+
  CCE26805.1  12 FDEYYRCYPVVMapGSERPELNYGSKIILPPSALDKVSKLHVQWPLLMEMINGEKGRHSHAGVLEFIAEEGRAYIPQWMMVSLGMDVGDMIQIRTTSLE 110
                 899*********9999*********************************************************************************** PP

        UFD1  98 kgkfvklqpqsedfldisdpkavLekaLrnfatLtkgdvieikyndkvyelkvlevkpes...avsiietdlevdfaeP 173
                  +k+vklqpqs++fl+is pkavLe+a+rnfatLtkgdv++++ynd++y+++vl+vkpe+   +vs+ietd++v+fa+P
  CCE26805.1 111 LAKMVKLQPQSVNFLEISGPKAVLERAFRNFATLTKGDVFNFEYNDEIYDVAVLDVKPETdkmGVSMIETDVSVEFAPP 189
                 **********************************************************99999**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2847.19
//
Query:       CCE26806.1  [L=469]
Description: uncharacterized protein CPUR_00275 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-10   39.7   2.7    6.8e-10   38.5   2.7    1.7  1  GYF              GYF domain
  ------ inclusion threshold ------
      0.067   13.4   3.5        0.1   12.8   2.8    1.7  1  Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3


Domain annotation for each model (and alignments):
>> GYF  GYF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   2.7   7.6e-14   6.8e-10       1      40 [.     415     458 ..     415     465 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 7.6e-14
         GYF   1 WeYk....dpqgevqGPFsseeMqkWykagYFkdgllvrrveds 40 
                 We++     +++  qGPF +++M++W+++gYF +g+++r+ +++
  CCE26806.1 415 WEFRwtdgRDDASKQGPFQASMMKAWQDSGYFGHGVEFRHAGQG 458
                 9***997646999***************************9763 PP

>> Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.8   1.1e-05       0.1      42      90 ..     346     418 ..     274     454 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
  Gluconate_2-dh3  42 lppeqeayrkglaaldayaraeygksFveldgaqqdalLealekeaea........................k 90 
                      + peq +++++++a+ ++a++ ++++F ++ +++++ l++a+ +e+ +                        +
       CCE26806.1 346 QDPEQARIKEAITAITDAADKLFNRDFEDIYEQDRELLMRAYRRETGEdwvevdaqqqnntssepaaqewefR 418
                      4567****************************************97767777766665555555555555552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3448.84
//
Query:       CCE26807.1  [L=337]
Description: CCG-7 glyceraldehyde 3-phosphate dehydrogenase (ccg-7) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-70  236.3   0.0    1.6e-70  235.8   0.0    1.2  1  Gp_dh_C       Glyceraldehyde 3-phosphate dehydrogenase, C-ter
    4.4e-39  132.9   0.0      1e-38  131.7   0.0    1.6  1  Gp_dh_N       Glyceraldehyde 3-phosphate dehydrogenase, NAD b
  ------ inclusion threshold ------
      0.016   15.4   0.2       0.05   13.7   0.2    2.1  1  DapB_N        Dihydrodipicolinate reductase, N-terminus
       0.13   11.6   0.0       0.25   10.7   0.0    1.5  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.8   0.0   3.5e-74   1.6e-70       1     158 []     156     313 ..     156     313 .. 1.00

  Alignments for each domain:
  == domain 1  score: 235.8 bits;  conditional E-value: 3.5e-74
                 HHHHHHHHHHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS-H CS
     Gp_dh_C   1 LaplakvlndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevtv 99 
                 Laplakv++dk+ i++glmttvh+yt++Qk++Dgps kd+r +r aa+niip+stgaakavg+V+p+l+gkl+g+++rVPtpnvsvvdl+v++ek +t+
  CCE26807.1 156 LAPLAKVIHDKYTIVEGLMTTVHSYTATQKTVDGPSGKDWRGGRGAAQNIIPSSTGAAKAVGKVIPDLNGKLTGMSMRVPTPNVSVVDLTVRIEKGATY 254
                 8************************************************************************************************** PP

                 HHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEETTTEEEEEEEE CS
     Gp_dh_C 100 eevnaalkeaaegalkgilsyteeelvssDlvgdphssifdaketivveenlvkvvawy 158
                 +e++a++keaa+g+l gil+yte+++vssD++g+++ssifdak++i +++n+vk++awy
  CCE26807.1 255 DEIKATVKEAANGSLAGILGYTEDDIVSSDMNGNTNSSIFDAKAGISLNKNFVKLIAWY 313
                 **********************************************************9 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   0.0   2.2e-42     1e-38       1     100 [.       3     103 ..       3     104 .. 0.99

  Alignments for each domain:
  == domain 1  score: 131.7 bits;  conditional E-value: 2.2e-42
                 CEEEEESTSHHHHHHHHHHHHHTTCEEEEEE-.TS-HHHHHHHHHEETTTEC-SS-EEEETTEEEETTEEEEEE--SSGGGS-CHHHTSSEEEE-SSS- CS
     Gp_dh_N   1 vkvainGfGRIGrlvlralleekelevvaind.ltdletlayllkyDsvhgrfkgeveaeeealvvngkkikvlaekdpeelpwkelgvdlVvestGvf 98 
                 vkv+inGfGRIGr+v+r ++e++e+evva+nd ++d+e++ay+lkyDs hg fkge++ + + l+vngkk+k+++e+dp+++pwk+ g++++vestGvf
  CCE26807.1   3 VKVGINGFGRIGRIVFRNAVEHPEIEVVAVNDpFIDPEYAAYMLKYDSSHGVFKGEIKKDADGLIVNGKKVKFHTERDPSAIPWKASGAEYIVESTGVF 101
                 69******************************99***************************************************************** PP

                 -S CS
     Gp_dh_N  99 td 100
                 t+
  CCE26807.1 102 TT 103
                 98 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   1.1e-05      0.05       1      33 [.       3      34 ..       3     121 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
                EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEE CS
      DapB_N  1 ikvavvGasGrmGkevvkaveeaedlelvaavd 33
                +kv+++G+ Gr+G+ v + + e++++e+va+ d
  CCE26807.1  3 VKVGINGF-GRIGRIVFRNAVEHPEIEVVAVND 34
                69******.********************9866 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.6e-05      0.25      38      68 ..       4      35 ..       1      57 [. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.6e-05
                  EEEEES-SHHHHHHHHHHH.HTT-EEEEESSS CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlk.afgmkviaydrs 68
                  +vGi G+GrIG+ v + +    +++v+a++  
    CCE26807.1  4 KVGINGFGRIGRIVFRNAVeHPEIEVVAVNDP 35
                  89************998875778888877644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2492.42
//
Query:       CCE26808.1  [L=935]
Description: uncharacterized protein CPUR_00277 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (935 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1255  (0.0699983); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.49
# Mc/sec: 5681.15
//
Query:       CCE26809.1  [L=473]
Description: probable RUVB-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-154  514.6   3.0   1.8e-154  514.2   3.0    1.1  1  TIP49            TIP49 P-loop domain
    8.1e-21   73.9   0.5    2.8e-20   72.2   0.5    2.0  2  TIP49_C          TIP49 AAA-lid domain
    2.5e-08   33.8   1.6    4.9e-05   23.1   0.1    2.7  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.3e-07   32.2   1.5    4.3e-05   23.9   0.1    3.4  3  AAA              ATPase family associated with various cellul
    6.1e-07   29.0   1.1    1.3e-06   27.9   1.1    1.5  1  DnaB_C           DnaB-like helicase C terminal domain
    1.2e-05   25.8   0.1    3.1e-05   24.4   0.1    1.9  1  AAA_16           AAA ATPase domain
     0.0016   17.9   0.9      0.021   14.2   0.3    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0085   16.4   0.1       0.82    9.9   0.0    2.7  3  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.011   16.0   1.7       0.66   10.3   1.7    2.6  1  AAA_19           AAA domain
      0.017   14.8   0.0        4.4    7.0   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
      0.027   14.2   1.3       0.25   11.1   1.3    2.1  1  AAA_11           AAA domain
      0.036   13.6   0.1      0.073   12.6   0.1    1.5  1  AAA_25           AAA domain
       0.07   13.1   0.8        3.5    7.6   0.0    3.2  3  AAA_5            AAA domain (dynein-related subfamily)
      0.084   12.0   0.0       0.13   11.3   0.0    1.3  1  Parvo_NS1        Parvovirus non-structural protein NS1
       0.13   12.5   0.0       0.29   11.4   0.0    1.6  1  AAA_28           AAA domain
       0.13   11.7   0.2       0.54    9.7   0.0    2.0  2  AAA_7            P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  514.2   3.0  1.6e-157  1.8e-154       2     349 ..      20     361 ..      19     363 .. 0.98

  Alignments for each domain:
  == domain 1  score: 514.2 bits;  conditional E-value: 1.6e-157
                 XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   2 islhshikgLGlded.geaekeeeglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevl 99 
                 i++hshi+gLG+d++ +e++++++glvGq+kar+aa+vi+++ike+k+aGravL+aGp++tGkta+a++++++lg dvpf++l++se++sle++kte+l
  CCE26809.1  20 IAAHSHIRGLGVDATsLEPRATSQGLVGQEKARKAAAVILQMIKEGKIAGRAVLIAGPPSTGKTAIAMGMAQSLGPDVPFTSLASSEIFSLEMSKTEAL 118
                 89***********8538899******************************************************************************* PP

                 XXXXXXXXXXXXXX-S-EEEEEEEEEEE...-SSS-..TTS--EEEEEE-SS-EEEEEE-HHHHHHHHHHT--TT-EEEEETTT--EEE-SSS-SS--- CS
       TIP49 100 tqalrksigvrikeekevleGevveleveeaenplskekkikevkitlktakeekklklgskiaeellkekvkegDviviekesGkvkklGrsearake 198
                 tqa+rksigvrikee+e++eGevve+++   +++++   ++k+ k+t+kt+++e  +++gsk++++++ke+v++gD+i i+k+sGk++klGrs+ar+++
  CCE26809.1 119 TQAFRKSIGVRIKEESEIMEGEVVEIQI---DRSVT--GTTKQGKLTIKTTDMEAVYDMGSKMIDAMTKERVMAGDIISIDKSSGKITKLGRSFARSRD 212
                 **************************99...67776..78899******************************************************** PP

                 ---..S--------S---S----XXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 199 fDi..ekdefvelPkGevekkkevvqevtLhdlDvanarpqdllslllqllkskkteiteklreeinkkvakyveegkaeivpGvlfiDevhmlDiecf 295
                 +D+   +++f ++P+Ge++k+kevv++vtLh++Dv+n+r+q++l+l+    +++++ei++++re+in+kv +++eegkaeivpGvlf+DevhmlDiecf
  CCE26809.1 213 YDAmgVDTKFLQCPDGELQKRKEVVHTVTLHEIDVINSRTQGFLALF----SGDTGEIRSEIREQINTKVGEWKEEGKAEIVPGVLFVDEVHMLDIECF 307
                 ***88899***************************************....************************************************ PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 296 sylnraleselaPivilatnrgiakirGtdiisphGipvDlldrlliiktekyt 349
                 sy+nrale++laP++i+a+nrg+++irGt++ sphG+p+D+ldr++ii+t++y+
  CCE26809.1 308 SYINRALEDDLAPVIIMASNRGLSRIRGTNYRSPHGLPIDFLDRVVIINTHAYN 361
                 ****************************************************98 PP

>> TIP49_C  TIP49 AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.9   7.8e+03      45      62 ..     154     171 ..     151     172 .. 0.84
   2 !   72.2   0.5   2.5e-23   2.8e-20       1      66 []     368     433 ..     368     433 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.9
     TIP49_C  45 kkrkkkevevedveevee 62 
                 +k++k ++++ d e v++
  CCE26809.1 154 TKQGKLTIKTTDMEAVYD 171
                 57888999999*999997 PP

  == domain 2  score: 72.2 bits;  conditional E-value: 2.5e-23
     TIP49_C   1 IlkiRakeEgvkldeeAldlLakigtetSLRYaiqLltpasilakkrkkkevevedveeveeLFlD 66 
                 Il+iRa+eE+++++ +Al lL+kig e +LRYa +L++ +++++ kr +k+v+v+dv++  +LF+D
  CCE26809.1 368 ILSIRAQEEEIDISTDALALLTKIGQEAGLRYASNLISTSQLVSAKRRAKQVSVDDVQRSFQLFYD 433
                 9****************************************************************9 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   4.4e-08   4.9e-05       7      65 ..      43     101 ..      36     107 .. 0.90
   2 !    8.9   0.1    0.0011       1.2      87     118 ..     293     324 ..     288     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.4e-08
      RuvB_N   7 eeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkits 65 
                 +  +gqek ++  +++++  k+ + a   vl++GpP  Gkt++a+ +a+ lg ++  ts
  CCE26809.1  43 QGLVGQEKARKAAAVILQMIKEGKIAGRAVLIAGPPSTGKTAIAMGMAQSLGPDVPFTS 101
                 5689***********************************************99988887 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0011
      RuvB_N  87 vlfideihrlsraveevlysamedfrldivig 118
                 vlf+de+h l+ +   ++  a+ed    ++i 
  CCE26809.1 293 VLFVDEVHMLDIECFSYINRALEDDLAPVIIM 324
                 9***********************88877775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   3.9e-08   4.3e-05       1      50 [.      72     123 ..      72     194 .. 0.86
   2 ?    4.9   0.0      0.03        34      44      70 ..     272     302 ..     253     339 .. 0.69
   3 ?   -0.4   0.0       1.3   1.5e+03      64      93 ..     362     391 ..     352     416 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 3.9e-08
                 EEEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSSSTTHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg..vefleisgsellskyvgesekkirelf 50 
                 vl+ Gpp tGKT++a  +a++lg  v+f ++  se++s  ++++e+ ++++ 
  CCE26809.1  72 VLIAGPPSTGKTAIAMGMAQSLGpdVPFTSLASSEIFSLEMSKTEALTQAFR 123
                 799*******************777************665665555555443 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHTS....TSEEEEEETGGGH CS
         AAA  44 kkirelfkeakeka....kpsilfiDEidal 70 
                 ++i+  + e ke+      p +lf+DE++ l
  CCE26809.1 272 EQINTKVGEWKEEGkaeiVPGVLFVDEVHML 302
                 33333333333333455689********987 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.3
                 EETGGGHHHHHTTCCCHHHHHHHHHHHHHH CS
         AAA  64 iDEidalaksrsgseseeeervvnqLltel 93 
                 +DEi ++ + r ++e+ + ++ + +Llt++
  CCE26809.1 362 VDEIKQILSIRAQEEEIDISTDALALLTKI 391
                 699****99994444433333344444444 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   1.1   1.2e-09   1.3e-06      14     127 ..      64     182 ..      57     196 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.2e-09
                 TSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHH....CSTSEEEEEESSSXHHHHHHHHHHHHHTXX...HHHHHHTTSXHHHHHHHHHHHHHHHHSEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  14 sGlqkgdliiiAarpsmGktalalniaenaav....keklpvavfslemsaeqlvqRllsseaeid...skklrtgklkeedweklteaieelseaklf 105
                 +G   g  ++iA+ ps+Gkta+a+ +a++       ++ ++  +fslems+++ +++ + +  +++   ++++ +g++ e ++++    +++ ++ kl+
  CCE26809.1  64 EGKIAGRAVLIAGPPSTGKTAIAMGMAQSLGPdvpfTSLASSEIFSLEMSKTEALTQAFRKSIGVRikeESEIMEGEVVEIQIDRSV--TGTTKQGKLT 160
                 566678889*******************977523334445699**********9999999988876333556778888776666554..4566888999 PP

                 EEEXSSXCHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 106 iddtpaltvseirskarrlkke 127
                 i+ t    v ++ sk+    ++
  CCE26809.1 161 IKTTDMEAVYDMGSKMIDAMTK 182
                 9999999999998887654333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   2.8e-08   3.1e-05       2     107 ..      45     199 ..      44     324 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.8e-08
      AAA_16   2 lvGReeeleqLlsalervrsgrp..elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy...salaqalareellrqlldeaesaele 95 
                 lvG e+ +++ + +l+++++g    ++vl+ G++ +GK++++   +++l  d  ++  +  + ++  +++    al+qa+ r+++   +++e+e  e e
  CCE26809.1  45 LVGQEKARKAAAVILQMIKEGKIagRAVLIAGPPSTGKTAIAMGMAQSLGPDVPFTSLASSEIFS--LEMsktEALTQAF-RKSIGVRIKEESEIMEGE 140
                 7999999999999********9999***************************4444444444442..2223325599999.7799999*9999999999 PP

      AAA_16  96 awrekleeala...............................................a 107
                     +++++++                                                
  CCE26809.1 141 VVEIQIDRSVTgttkqgkltikttdmeavydmgskmidamtkervmagdiisidkssgK 199
                 99999999988777666666666666666666666665555555555555555555550 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3   1.8e-05     0.021       5      69 ..      45     116 ..      42     126 .. 0.73
   2 ?    1.2   0.0      0.17     2e+02     108     133 ..     292     317 ..     282     329 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
  Mg_chelatase   5 vkGqeeakraleiaa.......aGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkee 69 
                   ++Gqe+a++a  +         + g  +l++Gpp +GKt +a  +++ l p     +l +++i s+  +k+e
    CCE26809.1  45 LVGQEKARKAAAVILqmikegkIAGRAVLIAGPPSTGKTAIAMGMAQSLGPDVPFTSLASSEIFSLEMSKTE 116
                   5788888887665421111111345789*******************9999999999999999999884433 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.17
  Mg_chelatase 108 GvLfLDElpefkrkvlevLRePledg 133
                   GvLf+DE+  ++ + +  + + led 
    CCE26809.1 292 GVLFVDEVHMLDIECFSYINRALEDD 317
                   9*******999999999888888875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.07        78       6      39 ..      70      94 ..      68     144 .. 0.75
   2 !    9.9   0.0   0.00073      0.82      73     131 ..     261     327 ..     198     333 .. 0.70
   3 ?   -2.7   0.0       5.9   6.6e+03      78     102 ..     403     426 ..     363     438 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.07
      AAA_22  6 gilvvtGesGtGKTtllrrlleqldeeakaeeer 39
                + +++ G++ tGKT  +  ++++l         +
  CCE26809.1 70 RAVLIAGPPSTGKTAIAMGMAQSL---------G 94
                56899*********9998777777.........4 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00073
      AAA_22  73 lsseellealeqalrarav...........ielliiDEaqhlrseealeeLrsllnlsrkgvqliLvGtp 131
                 +++ e+++ ++++++++             +++l +DE++ l   e+++++ + l+  +++ ++i++  +
  CCE26809.1 261 GDTGEIRSEIREQINTKVGewkeegkaeivPGVLFVDEVHML-DIECFSYINRALE--DDLAPVIIMASN 327
                 5566666677777777666777777788889***********.9*******77777..788888887665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.9
      AAA_22  78 llealeqalraravielliiDEaqh 102
                 l+++ +  + +r++ + + +D++q+
  CCE26809.1 403 LISTSQLVSAKRRA-KQVSVDDVQR 426
                 33333333333344.5566666666 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.7   0.00059      0.66       7     128 ..      66     316 ..      60     324 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00059
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkp.............eeillvaftgrAakelrerlaalgae........................ 68 
                 +++ + +l+ ++p tGKT + +++ + l                      e l  af +    +++e+ + +++e                        
  CCE26809.1  66 KIAGRAVLIAGPPSTGKTAIAMGMAQSLGPDVPFTSlasseifslemskTEALTQAFRKSIGVRIKEESEIMEGEvveiqidrsvtgttkqgkltiktt 164
                 567788899999999999999998888865543333455666666665555555555555555666666556555888888888877777776663333 PP

      AAA_19  69 ...atTiHrlal....................................................................................... 77 
                    a       +                                                                                       
  CCE26809.1 165 dmeA-------Vydmgskmidamtkervmagdiisidkssgkitklgrsfarsrdydamgvdtkflqcpdgelqkrkevvhtvtlheidvinsrtqgfl 256
                 3330.......2555555555555566667788888888888888888888888888888888888888888888888888888877777888888888 PP

      AAA_19  78 ...........ldfddlltealelleeaeeekklqeeellivDEfqdvdelqyrLlkallge 128
                             ++ ++++++++   ++e + ++    +l+vDE+ ++d   ++ +++ l++
  CCE26809.1 257 alfsgdtgeirSEIREQINTKVGEW-KEEGKAEI-VPGVLFVDEVHMLDIECFSYINRALED 316
                 7777666665533333333333333.34455555.466999999999996666655555534 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.004       4.4       9      45 ..      56      92 ..      45     118 .. 0.69
   2 ?    5.3   0.0     0.013        14      94     119 ..     291     316 ..     279     321 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.004
                     HHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat  9 kelleqikkvaktdlsvlitGesGtGKellaraihea 45
                     + +l++ik+       vli G   tGK+ +a  + ++
       CCE26809.1 56 AVILQMIKEGKIAGRAVLIAGPPSTGKTAIAMGMAQS 92
                     3344555555556689***************988764 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.013
                      TSEEEEETGGGS-HHHHHHHHHHHHH CS
  Sigma54_activat  94 gGtlfLDeigelplelQekLlrvlqe 119
                       G+lf+De++ l++e+ + + r+l++
       CCE26809.1 291 PGVLFVDEVHMLDIECFSYINRALED 316
                      59*************99999888876 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.3   0.00023      0.25      14      42 ..      62      94 ..      50     254 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
      AAA_11 14 lsese....itliqGPPGtgKTktivellsqll 42
                ++e +     +li GPP tgKT   +++ ++l 
  CCE26809.1 62 IKEGKiagrAVLIAGPPSTGKTAIAMGMAQSLG 94
                44444455579*****************99995 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   6.5e-05     0.073      28      63 ..      65      99 ..      51     113 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.5e-05
      AAA_25 28 gllpagelallaGapgtGKttlaldlalavatGkpw 63
                g  +ag  +l+aG+p tGKt++a+ +a ++  + p+
  CCE26809.1 65 GK-IAGRAVLIAGPPSTGKTAIAMGMAQSLGPDVPF 99
                45.4899*******************9876655555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0032       3.5       2      29 ..      72     100 ..      71     144 .. 0.81
   2 ?    2.4   0.0      0.13   1.5e+02      66      92 ..     291     317 ..     258     329 .. 0.82
   3 ?   -3.4   0.0       8.2   9.2e+03      30      52 ..     354     376 ..     351     379 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0032
                 EEEE--SSSSHHHHHHHGGGGB.S--EEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nrevey 29 
                 vl+ Gpp tgK+ +a+ +a+ l  +  ++
  CCE26809.1  72 VLIAGPPSTGKTAIAMGMAQSLgPDVPFT 100
                 899****************9996555444 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.13
                 -SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5  66 geilvlDEveraesevlnsLlslleer 92 
                 + +l++DEv++++ e ++  ++ le++
  CCE26809.1 291 PGVLFVDEVHMLDIECFSYINRALEDD 317
                 6799**********9999999999985 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8.2
                 EE--TT--HHHHH--B--..... CS
       AAA_5  30 vqltrdtteedlkgrreikngtt 52 
                 + +t  ++ +++k+ ++i+ +++
  CCE26809.1 354 IINTHAYNVDEIKQILSIRAQEE 376
                 55667788999999999875554 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.13      98     137 ..      53      92 ..      49     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
   Parvo_NS1  98 evgqvllawlskqlgkrntvwfyGpantGktnlaeaIaka 137
                 +++ v+l+++++ +    +v++ Gp++tGkt +a+ +a+ 
  CCE26809.1  53 KAAAVILQMIKEGKIAGRAVLIAGPPSTGKTAIAMGMAQS 92 
                 6788888999998899999****************77764 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00026      0.29       2      57 ..      72     130 ..      71     149 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00026
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvvpEaareileeklakgedalpwv.edllafae 57 
                 + i G++stGKT ++  +a+    ++p    a  ei++ ++ k+e  l ++ ++ + +++
  CCE26809.1  72 VLIAGPPSTGKTAIAMGMAQSlgpDVPFTSLASSEIFSLEMSKTEA-LTQAfRKSIGVRI 130
                 889****************988666777788888888888877775.4444355555544 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00048      0.54      32      60 ..      68      96 ..      50     122 .. 0.84
   2 ?   -1.8   0.0       1.7   1.9e+03     103     117 ..     293     307 ..     291     309 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00048
       AAA_7 32 nkkpvllvGptGtGKtviikdllkkldke 60
                +++ vl+ Gp  tGKt+i++ + ++l ++
  CCE26809.1 68 AGRAVLIAGPPSTGKTAIAMGMAQSLGPD 96
                5689****************999998754 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
       AAA_7 103 vvFvDDlnmpakeky 117
                 v+FvD+++m   e +
  CCE26809.1 293 VLFVDEVHMLDIECF 307
                 79*******988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3397.86
//
Query:       CCE26810.1  [L=694]
Description: uncharacterized protein CPUR_00279 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.22   11.3  12.5        6.5    6.5   0.1    2.8  2  MCPsignal     Methyl-accepting chemotaxis protein (MCP) signa
       0.38   11.5  16.4        5.4    7.8   0.8    4.8  5  HWE_HK        HWE histidine kinase
       0.76    9.9   7.4       0.14   12.2   0.8    3.1  3  HisKA_2       Histidine kinase
        1.1    8.7  39.2      0.016   14.8  15.4    3.5  4  Exonuc_VII_L  Exonuclease VII, large subunit
        9.4    6.6   9.5       0.41   10.9   1.6    2.9  3  Sun2_CC2      SUN2 coiled coil domain 2


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.7    0.0022         8      76     171 ..     236     331 ..     234     332 .. 0.90
   2 ?    6.5   0.1    0.0018       6.5     107     153 ..     404     450 ..     374     455 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHHHHHHHH..............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  76 EVrkLAersaqaakeiealiieiqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakv 171
                 E++k+A+ +      ++a  +++qke+++  +sl++ +qr ++  ++ ++ ++ l++++e+ +++a+     + + +++++ +++v+q +++++++
  CCE26810.1 236 EIKKVAASTSANLSTTSAGQVKLQKETDELRKSLQSEKQRNDSLEKKLQDMEQRLNSMSEQQDKLAQDTAANNLSGKNKAEDSHKVSQLMQKLDNI 331
                 899998877766666666666**********************************************99999999*************99999876 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0018
                 ...HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 107 esleetrqrveegselveetgealkeiveavaevadlvqeiaaasee 153
                 + + + + +v++ ++l+++t ++ + i+e+ + +++++  +++a ++
  CCE26810.1 404 RCIADLQAQVNSCTDLIQSTSKQSEAISESLKALEATICALQSARQQ 450
                 66788889999999999999999999999999999999999988776 PP

>> HWE_HK  HWE histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.8   1.7e+04      56      71 ..     150     165 ..     146     175 .. 0.56
   2 ?    2.6   0.3     0.063   2.3e+02      32      81 ..     210     260 ..     204     262 .. 0.82
   3 ?    7.8   0.8    0.0015       5.4      22      54 ..     274     306 ..     267     310 .. 0.83
   4 ?    1.8   0.1      0.11   3.9e+02      16      47 ..     419     450 ..     411     459 .. 0.85
   5 ?    7.3   0.1    0.0022       7.9      26      47 ..     602     623 ..     595     639 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.8
                 EEHHHHHHHHHHHHHH CS
      HWE_HK  56 aeLaelleeelapyed 71 
                 a+ +e+l+++++++++
  CCE26810.1 150 AHYSEVLQTQIEQCQK 165
                 5556666666666654 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.063
                 HHHHHHHHHHHHHHHHHHHCT.TS-EEHHHHHHHHHHHHHHHSTTSEEEE- CS
      HWE_HK  32 eklsgRLqALsaahdllsree.wagaeLaelleeelapyedeaserielsG 81 
                 e++++RL  L +a +  ++++  +  e++++++++ a  +++++ +++l+ 
  CCE26810.1 210 EEFDARLDNLRKALETSVKQRiQENREIKKVAASTSANLSTTSAGQVKLQK 260
                 79***********99966655156789*****9999999999999998875 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0015
                 SSXS-HHHHHHHHHHHHHHHHHHHHHHHHCTTS CS
      HWE_HK  22 rsaesleefaeklsgRLqALsaahdllsreewa 54 
                 ++++sle+  +++++RL+++s+ +d l+++++a
  CCE26810.1 274 QRNDSLEKKLQDMEQRLNSMSEQQDKLAQDTAA 306
                 568899999*****************9998765 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.11
                 HHHHHSSSXS-HHHHHHHHHHHHHHHHHHHHH CS
      HWE_HK  16 iarqtlrsaesleefaeklsgRLqALsaahdl 47 
                 +++ t++++e  +e  ++l++ + AL +a + 
  CCE26810.1 419 LIQSTSKQSEAISESLKALEATICALQSARQQ 450
                 67889999999999999999999999998765 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0022
                 -HHHHHHHHHHHHHHHHHHHHH CS
      HWE_HK  26 sleefaeklsgRLqALsaahdl 47 
                 + +e   ++s+RLqAL+  hd 
  CCE26810.1 602 QHNESLGSFSNRLQALAGEHDR 623
                 56778899***********996 PP

>> HisKA_2  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.8     4e-05      0.14      18      59 ..     268     309 ..     267     317 .. 0.91
   2 ?   -2.4   0.1       1.5   5.3e+03      19      43 ..     420     444 ..     412     451 .. 0.78
   3 ?   -1.0   0.0      0.53   1.9e+03      27      48 ..     601     622 ..     592     630 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4e-05
     HisKA_2  18 slqarkakdeevkealresqnRvlsialiheeLyksedletv 59 
                 slq++k ++++ ++ l+++++R +s++  +++L +++  +++
  CCE26810.1 268 SLQSEKQRNDSLEKKLQDMEQRLNSMSEQQDKLAQDTAANNL 309
                 69********************************99877665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.5
     HisKA_2  19 lqarkakdeevkealresqnRvlsi 43 
                 +q+++ ++e+++e l+ ++  + ++
  CCE26810.1 420 IQSTSKQSEAISESLKALEATICAL 444
                 5788888888899998888887776 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.53
     HisKA_2  27 eevkealresqnRvlsialihe 48 
                 ++++e l ++ nR +++a  h+
  CCE26810.1 601 QQHNESLGSFSNRLQALAGEHD 622
                 45689999999****9998776 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       1.5   5.5e+03     179     194 ..     150     165 ..     104     181 .. 0.42
   2 ?   14.8  15.4   4.5e-06     0.016     131     267 ..     199     339 ..     196     364 .. 0.64
   3 ?    4.7   1.2    0.0051        18     160     274 ..     376     501 ..     366     507 .. 0.63
   4 ?    5.9   3.6    0.0023       8.4     138     243 ..     497     618 ..     491     682 .. 0.48

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.5
  Exonuc_VII_L 179 kspeellerkrqrlde 194
                   ++ +e+l+++ +++++
    CCE26810.1 150 AHYSEVLQTQIEQCQK 165
                   1222222222222222 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4.5e-06
  Exonuc_VII_L 131 PtaaAelvvpdkaeleeqleelerrlekaikrlleekkqrleklasrlkspeellerk....rqrldeleerleralkkqlkkkrerleelkerlke 223
                   P+  A+  v + +e+ ++l++l++ le+++k++++e++ +++k+a + + + + +++     +++ del+++l++  k++ ++ +++l+ +++rl+ 
    CCE26810.1 199 PSGLARSGV-RDEEFDARLDNLRKALETSVKQRIQENR-EIKKVAASTSANLSTTSAGqvklQKETDELRKSLQS-EKQRNDSLEKKLQDMEQRLN- 291
                   788888888.67899*******************9775.677776555322222222201125555666666666.45555555666666666663. PP

  Exonuc_VII_L 224 kleekkerl..kklkerle..lleekkerleeleeklealsplkvLkr 267
                   +++e++++l  ++ +++l+  + +e ++++++l++kl+++s +++ +r
    CCE26810.1 292 SMSEQQDKLaqDTAANNLSgkNKAEDSHKVSQLMQKLDNISVNTITRR 339
                   344455555222222333365677788888999999999988877666 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0051
  Exonuc_VII_L 160 ikrlleekkqrleklasrl.....kspeellerkrqrldeleerleralkkqlkkkrerleelkerl.kekleekkerlkklkerle.........l 241
                   ++++l++ ++ le+++s+l     ++p + +++ + +++++++ +++ ++kq ++ +e l+ l++++   + ++++++ + l    +         +
    CCE26810.1 376 TRQYLHNLSSALEEIKSSLdwqngSEPPRCIADLQAQVNSCTDLIQS-TSKQSEAISESLKALEATIcALQSARQQTKSQPLL---HplpqrppqpT 468
                   55666677777777777777766557778888888888887776666.66666666666666665554422222222222221...12234445654 PP

  Exonuc_VII_L 242 leekkerleeleeklealsplkvLkrGyaivrk 274
                    ++++++ ++ +++++ + p++  + G  ++++
    CCE26810.1 469 SASTSTSTSTTTAHISPTAPQQSFTAGHVVTQQ 501
                   556666667788889999999999999888876 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0023
  Exonuc_VII_L 138 vvpdkaeleeqleelerrlekaikrll..........................eekkqrleklasrlkspeellerkrqrldeleerleralkkq.. 206
                   vv  +++l +ql++l+  l++a ++++                          +       k++ ++++++  +e++  ++++ +e+l r l++   
    CCE26810.1 497 VV-TQQDLDDQLQKLSTDLTEASRKRIkrrlldvaetfggfadeerdhrkelaN-------KTDLAINQADLAFEKAGLAFNK-AESLGRGLEEFrv 584
                   44.588999999999999999999999555555555565555444322222110.......2222222222233333333222.2222221111111 PP

  Exonuc_VII_L 207 .lkkkrerleelkerlkekleekkerlkklkerlelle 243
                    ++ + +r +el+    + l++++e+l + ++rl+ l+
    CCE26810.1 585 yVHDAVRRHNELE----TMLQQHNESLGSFSNRLQALA 618
                   1111111111111....222233333333333333111 PP

>> Sun2_CC2  SUN2 coiled coil domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.2   4.4e+03       7      35 ..     222     248 ..     218     257 .. 0.69
   2 ?   10.9   1.6   0.00011      0.41       1      29 [.     279     306 ..     279     312 .. 0.92
   3 ?   -2.4   0.1       1.6   5.7e+03       1      12 [.     670     681 ..     670     681 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
    Sun2_CC2   7 eLEkkILaklaeeqgksardaaasvgvaL 35 
                 +LE  + +++ e+++  +  +aas    L
  CCE26810.1 222 ALETSVKQRIQENREIKK--VAASTSANL 248
                 688888888888888554..666655555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
    Sun2_CC2   1 LqaeLqeLEkkILaklaeeqgksardaaa 29 
                 L+++Lq++E++ L+ ++e+q k a+d+aa
  CCE26810.1 279 LEKKLQDMEQR-LNSMSEQQDKLAQDTAA 306
                 789********.8*************876 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.6
    Sun2_CC2   1 LqaeLqeLEkkI 12 
                 L  +L eLE+++
  CCE26810.1 670 LNSRLGELERQV 681
                 6789*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2505  (0.139718); expected 358.6 (0.02)
Passed bias filter:                      690  (0.0384851); expected 358.6 (0.02)
Passed Vit filter:                       131  (0.0073066); expected 17.9 (0.001)
Passed Fwd filter:                        67  (0.00373696); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.27u 0.33s 00:00:01.60 Elapsed: 00:00:00.51
# Mc/sec: 4067.35
//
Query:       CCE26811.1  [L=485]
Description: uncharacterized protein CPUR_00280 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-08   32.6   0.0    1.3e-07   31.5   0.0    1.6  1  HLH              Helix-loop-helix DNA-binding domain


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0     7e-12   1.3e-07       1      52 [.     418     468 ..     418     469 .. 0.96

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 7e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHCSTCSTTSS-STHHHHHHHHHHHHHHH CS
         HLH   1 rraahnerErrRRdriNsaleeLrellPslppskKlsKaeiLekAveYIkhL 52 
                 +r++h   E++RR  i+++++ L  l+P + ++   sK+++L++A + + +L
  CCE26811.1 418 KRENHIRSEQKRRTLIKQGFDDLGVLVP-GLRGGGFSKSTTLTMAADWLEQL 468
                 79**************************.899999************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       905  (0.0504769); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3388.43
//
Query:       CCE26812.1  [L=535]
Description: uncharacterized protein CPUR_00281 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.016   13.8   0.0      0.023   13.3   0.0    1.1  1  Peptidase_M44  Metallopeptidase from vaccinia pox


Domain annotation for each model (and alignments):
>> Peptidase_M44  Metallopeptidase from vaccinia pox
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.3e-06     0.023      42      99 ..     284     342 ..     270     364 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-06
  Peptidase_M44  42 llehilisfdsskfvanastarsymsfwcksikkrseldavrtli.swffdkdklkddf 99 
                     +eh l++f ss + a a   rsy+ f c+ + k  +++a+ +++ sw++ +++ k + 
     CCE26812.1 284 SVEHHLLQFQSSLWEAVAVLKRSYLQFSCMLRSKVIFKEALIHIVgSWYLGQERPKFEI 342
                    58***************************988877777776555549*99888665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3968.19
//
Query:       CCE26813.1  [L=496]
Description: uncharacterized protein CPUR_00282 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.67   10.1   3.4        2.4    8.3   0.0    2.8  3  DUF4235   Protein of unknown function (DUF4235)


Domain annotation for each model (and alignments):
>> DUF4235  Protein of unknown function (DUF4235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3     0.019   3.4e+02      50      76 ..      98     124 ..      96     125 .. 0.90
   2 ?   -3.0   0.0      0.44   7.9e+03      45      55 ..     177     187 ..     162     202 .. 0.68
   3 ?    8.3   0.0   0.00014       2.4      40      59 ..     455     474 ..     440     481 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.019
     DUF4235  50 AaisGavlavvrvaadRgtargverlt 76 
                 +++++++  v+  aa+R + ++  rlt
  CCE26813.1  98 TLLQALLSKVIARAATRLGSSWQLRLT 124
                 579999**************9999988 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.44
     DUF4235  45 evllfAaisGa 55 
                 +  lfAa +++
  CCE26813.1 177 DLTLFAATQAV 187
                 56678888876 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00014
     DUF4235  40 dvslrevllfAaisGavlav 59 
                 ++++re l+fAa +++v++ 
  CCE26813.1 455 EMQWRETLVFAASTAVVFTC 474
                 89***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3848.76
//
Query:       CCE26814.1  [L=301]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-12   46.5   0.0    9.9e-06   25.1   0.0    3.2  3  Pkinase      Protein kinase domain
     0.0027   17.0   0.0        0.1   11.8   0.0    2.7  2  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
       0.17   11.5   0.0       0.26   10.9   0.0    1.2  1  WaaY         Lipopolysaccharide core biosynthesis protein (Wa


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.7e-09   9.9e-06       6     123 ..       3     120 ..       1     151 [. 0.81
   2 !    9.3   0.0   0.00011      0.66     135     186 ..     190     249 ..     174     253 .. 0.72
   3 !    8.6   0.0   0.00018       1.1     234     264 .]     264     294 ..     250     294 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.7e-09
                 EEEEESSEEEEEEEETTTTEEEEEEEEECH.CHCHHHHHHHHHHHHHHH..HHSCTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   6 klGeGsfGkVykaveketgkivAvKkikke.kakkkkekkvlrEikilk..klkhpnivrlyevfee....kdelylvleyveggeladllerkgslse 97 
                 klG G+f++V  a++  +++ vAvK+   + k   ++e ++l+ i+     kl  +++++l++vf        + +lv+e+v+   l d        +e
  CCE26814.1   3 KLGYGAFATVWLARDLVEKRYVAVKVGLGSdKPLPDREAEILSQIRKTGpgKLGYERVIELLDVFVVegpnGFHQCLVTEVVS--PLSDED-----TNE 94 
                 89***********************965550445555577787777664225669*********9886665668889999999..444444.....467 PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrD 123
                     ++++qi+eg+++lH +gi+H D
  CCE26814.1  95 YCSYDVVRQIVEGFAFLHGEGIVHGD 120
                 78889*******************99 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00011
                 TEEEE-SGTTSEESSSSCSBCTTTSCG..GGS-HHHH........TTSCBSHHHHHHHHHHH CS
     Pkinase 135 gelKitDFGlakelessskltsfvgts..eYlAPEvl........keneyskkvDvWslGvi 186
                  ++Ki DFG a++ ++     +  g +     +PE l         ++  s+++D+W++G +
  CCE26814.1 190 LNVKILDFGRACRKSQAV--ADLLGAPprIIQPPEFLlhelrhgeISSTWSEAADIWAVGFL 249
                 469*********999976..55555431145577777776656533355599*******976 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00018
                 -HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 seeakdllkkllkkdpkkRltaeellqhpyl 264
                  + +++++++++  +p +R t++ ll +p++
  CCE26814.1 264 RSRFLNFIQRMIITNPDERTTMKALLTDPFM 294
                 67899***********************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   1.8e-05       0.1       6     128 ..       3     120 ..       1     126 [. 0.76
   2 ?    1.8   0.0      0.02   1.2e+02     135     194 ..     185     249 ..     177     256 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.8e-05
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHH..HTS-BTTB--EEEEEESSSS....EEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakim..kklkhpnivkllgvctkeep....llivteyvkgGdLlkfLrkk 95 
                  klG Gaf++V+ ++       ++  VavK+   +++   ++++e+l++++     kl  +++++ll v + e+p     ++vte v      + L ++
   CCE26814.1   3 KLGYGAFATVWLARDL----VEKRYVAVKVGlgSDKPLPDREAEILSQIRKTgpGKLGYERVIELLDVFVVEGPngfhQCLVTEVV------SPLSDE 90 
                  79**********9988....677888888863455556666788888887762257899*********997777455577777766......457776 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrd 128
                      ++    ++++ q+ +G ++L+ + +vH d
   CCE26814.1  91 ---DTNEYCSYDVVRQIVEGFAFLHGEGIVHGD 120
                  ...444555667889****************98 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.02
                  EEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE........EEHHHHHHHHHHH CS
  Pkinase_Tyr 135 LlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk........ftsksDvWsfGvl 194
                  + + +  vki DfG a +    ++ v++  +  p    +pE l ++          ++++D+W+ G l
   CCE26814.1 185 FTAGSLNVKILDFGRACRK---SQAVADLLGAPPRIIQPPEFLLHELrhgeisstWSEAADIWAVGFL 249
                  5556678999999976655...6666666666666667888877766677778888999999998865 PP

>> WaaY  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.3e-05      0.26     139     168 ..      99     128 ..      78     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.3e-05
        WaaY 139 evkakikqsieklhqlgmvsgdphrgnfiv 168
                 +v  +i + +  lh  g+v gdph gnf +
  CCE26814.1  99 DVVRQIVEGFAFLHGEGIVHGDPHIGNFGI 128
                 566678888999****************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2165.58
//
Query:       CCE26815.1  [L=350]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-10   39.0   0.0    1.8e-05   24.3   0.0    2.4  2  Pkinase      Protein kinase domain
  ------ inclusion threshold ------
      0.016   14.5   0.0       0.13   11.5   0.0    2.4  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0     2e-09   1.8e-05       2     128 ..      60     186 ..      59     195 .. 0.77
   2 !   12.3   0.0   8.7e-06     0.078     136     188 ..     252     312 ..     234     329 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2e-09
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCH.CHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkeka.kkkkekkvlrEikilkklk..hpnivrlyevfee....kdelylvleyveggeladllerkg 93 
                 + + klG+G+f++V  a++  +++ vAvK+   +++   ++e ++l+ i+     k   +++++l++vf        + +lv+e+v+   l d      
  CCE26815.1  60 RIMLKLGHGAFATVWLARDLVEKRYVAVKVGLGSDKpLPDREADILSQIRETGPGKhgYERVIELLDVFIVegpnGFHQCLVTEVVS--PLSDPKA--- 153
                 66779************************96555440455556777777766666644689*******9876665668889999999..4555443... PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGG CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKpeN 128
                    ++   ++++q++eg+++lH +gi+H D   +N
  CCE26815.1 154 --RQHCSYDVVRQTVEGFAFLHGEGIVHGDPHIAN 186
                 ..34555699******************9965555 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 8.7e-06
                 EEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH........TTSCBSHHHHHHHHHHHHH CS
     Pkinase 136 elKitDFGlakelessskltsfvgtseYlAPEvl........keneyskkvDvWslGvily 188
                  +Ki  FG a ++++  +     + +  ++PEv+         ++  s+++D+W++G++++
  CCE26815.1 252 SVKILGFGRAYRMSQAVPNLLGAAPKMIRPPEVVlhelcdgrIGSTWSEAADIWAVGCTII 312
                 599************99888888888999*****9888775334677***********986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.5e-05      0.13       4     128 ..      62     181 ..      59     189 .. 0.76
   2 ?   -1.0   0.0     0.096   8.6e+02     164     195 ..     272     311 ..     248     314 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.5e-05
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-B..TTB--EEEEEESSSS....EEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkh..pnivkllgvctkeep....llivteyvkgGdLlkfLr 93 
                    klG+Gaf++V+ ++       ++  VavK+   +++   ++++++l++++     kh  +++++ll v + e+p     ++vte v+       L 
   CCE26815.1  62 MLKLGHGAFATVWLARDL----VEKRYVAVKVGlgSDKPLPDREADILSQIRETGPGKHgyERVIELLDVFIVEGPngfhQCLVTEVVS------PLS 149
                  568***********9988....67788888886345566666788899988887766554489*******9977774555777777765......455 PP

                  HTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST CS
  Pkinase_Tyr  94 kkekekltlkdllsfalqvAkGmeyLeskklvHrd 128
                  +    k + +  ++++ q  +G ++L+ + +vH d
   CCE26815.1 150 DP---KARQHCSYDVVRQTVEGFAFLHGEGIVHGD 181
                  54...666777888999999*************98 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.096
                  SSTSGGGGS-HHHHHHSE........EEHHHHHHHHHHHH CS
  Pkinase_Tyr 164 eaklpvkWmapEslkekk........ftsksDvWsfGvll 195
                   +  p    +pE++ ++          ++++D+W+ G ++
   CCE26815.1 272 LGAAPKMIRPPEVVLHELcdgrigstWSEAADIWAVGCTI 311
                  5555555556666666655666666689999***999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2521.93
//
Query:       CCE26816.1  [L=253]
Description: uncharacterized protein CPUR_00285 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1889.27
//
Query:       CCE26817.1  [L=665]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-11   42.8   0.0    2.4e-05   23.9   0.0    3.0  2  Pkinase       Protein kinase domain
  ------ inclusion threshold ------
      0.031   13.6   0.0       0.56    9.4   0.0    2.4  2  Pkinase_Tyr   Protein tyrosine kinase
       0.24   11.8   0.0       0.52   10.7   0.0    1.5  1  Nefa_Nip30_N  N-terminal domain of NEFA-interacting nuclear p


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0     4e-09   2.4e-05       2     123 ..      60     181 ..      59     210 .. 0.81
   2 !   14.8   0.0   2.4e-06     0.014     136     264 .]     252     366 ..     239     366 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 4e-09
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHH..HHHSCTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikil..kklkhpnivrlyevfee....kdelylvleyveggeladllerkg 93 
                 + + klG G+f++V  a++  +++ vAvK+   +++   ++  +vl+ i+     kl  +++++l++vf        + +lv+e+v+   l d      
  CCE26817.1  60 RIMLKLGFGAFATVWMARDLVEKRYVAVKVGHGSERPLPDReGEVLSQIRETgpGKLGYERVIELLDVFIVegpnGFHQCLVTEVVS--PLSDQD---- 152
                 56779*************************9888776544446666666655115677**********9876665668889999999..344433.... PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrD 123
                   +++   ++++qi+eg+++lH +gi+H D
  CCE26817.1 153 -TAHRCSYDVVRQIVEGFAFLHGEGIVHGD 181
                 .356677799******************99 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.4e-06
                 EEEE-SGTTSEESSSSCSBCTTTSCGGGS..-HHHH........TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH CS
     Pkinase 136 elKitDFGlakelessskltsfvgtseYl..APEvl........keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetk 224
                 ++Ki DFG a ++++     +  g   ++  +PE +         ++  s+++D+W++G +        ++++          e++           ++
  CCE26817.1 252 NVKILDFGRAYRMSQAV--PNLLGAAPWMirPPEFVleelcddrIGSTWSEAADIWAVGSLHDR----VEVWKR-Y-------ETRA----------YR 326
                 69***********9976..778888888655999998877765334677**********76544....467771.1.......1222..........22 PP

                 ...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 225 eklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++++  ++ s e+++l+k+++  +p +R   + ll +p++
  CCE26817.1 327 NSFRMLDDESLEFLNLIKRMIITNPDERTPTTVLLTDPFM 366
                 3455566678899999999999999999888888888875 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   9.3e-05      0.56       5     128 ..      63     181 ..      59     187 .. 0.75
   2 ?    1.2   0.0     0.032   1.9e+02     140     192 ..     251     308 ..     239     321 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 9.3e-05
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHH..HTS-BTTB--EEEEEESSSS....EEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakim..kklkhpnivkllgvctkeep....llivteyvkgGdLlkfLrk 94 
                   klG Gaf++V++++       ++  VavK+   +e+   +++ e+l++++     kl  +++++ll v + e+p     ++vte v+       L +
   CCE26817.1  63 LKLGFGAFATVWMARDL----VEKRYVAVKVGhgSERPLPDREGEVLSQIRETgpGKLGYERVIELLDVFIVEGPngfhQCLVTEVVS------PLSD 150
                  689*********99988....7788899998822344445556777777766522578999*******99977764555777777765......4666 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrd 128
                  +    +  +  ++++ q+ +G ++L+ + +vH d
   CCE26817.1 151 Q---DTAHRCSYDVVRQIVEGFAFLHGEGIVHGD 181
                  5...56667778999*****************98 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.032
                  TEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE........EEHHHHHHHHH CS
  Pkinase_Tyr 140 kvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk........ftsksDvWsfG 192
                    vki DfG a ++   ++ v +  +  p    +pE + e+          ++++D+W+ G
   CCE26817.1 251 LNVKILDFGRAYRM---SQAVPNLLGAAPWMIRPPEFVLEELcddrigstWSEAADIWAVG 308
                  679******88877...66666666666655558888777776777788899999999987 PP

>> Nefa_Nip30_N  N-terminal domain of NEFA-interacting nuclear protein NIP30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.7e-05      0.52      60      84 ..     321     345 ..     316     355 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.7e-05
  Nefa_Nip30_N  60 eklklknqfraLdedEveFLdevee 84 
                   e   ++n+fr Ld++  eFL+ +++
    CCE26817.1 321 ETRAYRNSFRMLDDESLEFLNLIKR 345
                   56679***************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4650.14
//
Query:       CCE26818.1  [L=326]
Description: uncharacterized protein CPUR_00287 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-50  170.7   0.0    7.1e-50  170.4   0.0    1.0  1  GET2      GET complex subunit GET2


Domain annotation for each model (and alignments):
>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.4   0.0     4e-54   7.1e-50       4     309 .]      19     322 ..      18     322 .. 0.80

  Alignments for each domain:
  == domain 1  score: 170.4 bits;  conditional E-value: 4e-54
        GET2   4 eaEKrrlLRERRqaKmakGgAssRLnkItgqgssvksst..tsvLdepaaekttpasttasssssasehddpeiediseiavkpkktasskkksplsee 100
                 + E++rl+RERR+aK+++G + +RLnkItg g +v  +t        p  +++++a++t+s ++ +  h+dp+++dis++ ++pk t++ ++++++se+
  CCE26818.1  19 ASEQARLRRERRNAKLQSG-GADRLNKITGLGGRVVGDTqqA--A--PVVSAEPAATATTSPKAGQ-THADPDEVDISQHYYEPKATSAAGSEPTISEA 111
                 57*****************.88*****************321..2..2222222333333333444.599**************999888877776665 PP

        GET2 101 sepeapqldqllkqllqqqqqgnsensqdae...sstP.dlfsqllkmmkqgegg..sakseeetssspee..aeyqqqlleyhkyqvkklkarfllvr 191
                       ql+q++ ++ ++ q+++++ +++ +   s+ P ++ ++++kmm+q++g+   a +++++   p++  ++ qqq ++ ++  ++ ++++++lv+
  CCE26818.1 112 ------QLRQMMLGFERPGQSTPGTPGSGPGagaSGIPnMEEDPMMKMMAQMMGAagGAPGSSPFPGMPPMmgMPGQQQPSTQTSSYHTIWRLIHALVA 204
                 ......9**********988887776665441115566989999*********998844444444444443115567777788888899********** PP

        GET2 192 llllllnfvYhvfrssks..............alvralteasvrnFftvFltfEvvllsiyylllkkiekenkvktlnnnslilklvslvpegvlPian 276
                 l l++++++++ f+++k                  ++ te+++r Ff++F+t E+vll+++++l  k +       +   +++ ++v++vpe       
  CCE26818.1 205 LGLGFYLTLFTNFSGTKLerdtaalaiqqhgvVGPDDETERQKRLFFWMFATSEAVLLTTRFFLD-KGR-------APPPGFVWTVVGFVPEP------ 289
                 ***************99999*****999996444455555559*********************8.333.......5789************9...... PP

        GET2 277 lrgkvalalkYwevlsmlltDlslvvvlfGlls 309
                 ++g++ + lkY +++++++ D++++ +++G++s
  CCE26818.1 290 FKGYLSVGLKYGQIFTTVRSDILTCMFVLGICS 322
                 *******************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2543.95
//
Query:       CCE26819.1  [L=745]
Description: related to sugar transport protein STP1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     6e-107  358.3  16.4   7.1e-107  358.1  16.4    1.0  1  Sugar_tr  Sugar (and other) transporter
    2.1e-28   99.3  24.6    6.3e-28   97.7  18.8    2.1  2  MFS_1     Major Facilitator Superfamily
    5.6e-09   35.0  22.5    1.9e-06   26.7   7.8    2.6  3  MFS_2     MFS/sugar transport protein
     0.0023   16.9   2.6     0.0023   16.9   2.6    1.8  2  MFS_5     Sugar-tranasporters, 12 TM
  ------ inclusion threshold ------
       0.16   10.4   4.8      0.073   11.5   0.8    2.0  2  MFS_3     Transmembrane secretion effector
       0.69   10.2   4.2        2.1    8.7   0.7    2.9  2  DUF2530   Protein of unknown function (DUF2530)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.1  16.4  2.4e-110  7.1e-107       3     452 .]     210     649 ..     208     649 .. 0.95

  Alignments for each domain:
  == domain 1  score: 358.1 bits;  conditional E-value: 2.4e-110
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkns 101
                 ++++lg +lfgYd gv+++++t + f+  f+  ++         ++g +v+i+ +Ga+i sl++g +gd++GR+ ++l ++ +f++g++lq aa+   s
  CCE26819.1 210 IFVSLGVFLFGYDQGVMSGIITGPYFIDYFNHPSKA--------QVGTMVAILEIGAFIASLVVGRVGDIIGRRRTILYGSCIFFVGGALQTAAT---S 297
                 6789999******************77666544333........3689***********************************************...* PP

                 -TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHH CS
    Sugar_tr 102 vevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylve 200
                 + +++vgR+++G+gvG+ s++vP+y+sEi+p++ Rg+l  +  ++ ++G   + ++++g   +++++ wri+l +q+v+  ll i+ l++ ESPr+l+ 
  CCE26819.1 298 MAMMMVGRIIAGLGVGMLSTIVPVYQSEISPPHNRGKLACIEFSGNIIGYTTSVWVDYGCGFIESNSSWRIPLLMQCVMGALLGIGSLVIVESPRWLLD 396
                 ***************************************************************999********************************* PP

                 TT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH.........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHH CS
    Sugar_tr 201 kgkeeeakevlaklrge.edadrelaeekdsleaeqeee....kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..llv 292
                 ++++ee   v+a+l g  +  d ++ +e++++++++  +    + ++ e++++  +r r++i++  q++ ql+Gin+i yy+p++fe++g      +l+
  CCE26819.1 397 NDHDEEGMVVIANLYGGgDIHDTKARDEYREIKMNVLLQrqegERTYAEMFRK--YRTRVFIAMSAQALAQLNGINVISYYAPYVFESAGWVGHdaVLM 493
                 *************6655488999999999999999887776778888888888..9**********************************998889*** PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaia 391
                 t+  g++ f++t+  ++lvdr+GRR++ll Ga+ m+i + +++   +++ +   +   +++ f++++ a+f+ +wgp+pw++ +E+ p+svRsk+++++
  CCE26819.1 494 TGFNGITYFLSTIPPWYLVDRWGRRPILLSGAIAMTISLSLIS--YFIYLDI-RWTPRMVVLFVMIYNAAFGYSWGPIPWLYPPEILPLSVRSKGASLS 589
                 ******************************************9..9999999.5********************************************* PP

                 HHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 392 vavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +a+nw +n l++ l+pi++e+i+ +  +lv a+++v+++++v+f++pet g+ le+++ lf
  CCE26819.1 590 TATNWAFNWLVGELTPILQERIQ-WRLYLVHAFFCVVSFVIVYFTYPETCGVRLEDMNSLF 649
                 ***********************.*********************************9887 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7  18.8   2.1e-31   6.3e-28       2     344 ..     213     593 ..     212     602 .. 0.80
   2 !    4.8   0.8    0.0037        11     140     174 ..     603     636 ..     572     647 .. 0.77

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 2.1e-31
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGl 97 
                 +l++fl +++ ++ + +++  +  + ++  s++++g+++++  +ga++asl++Gr++d +Grrr++l g  +f++g +l  + a+s+ +++v+r+++Gl
  CCE26819.1 213 SLGVFLFGYDQGVMSGIITGpYFIDYFNhPSKAQVGTMVAILEIGAFIASLVVGRVGDIIGRRRTILYGSCIFFVGgALQTA-ATSMAMMMVGRIIAGL 310
                 689999999999999999888888998879**********************************999999999999455555.47777*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllgg..lla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                 g g+l +++ ++ ++++p+ +rg+   +  +g+ +G+     +     ++ s+ +Wr + ++ +++++l+++ + l+++e+p+    + + ee+     
  CCE26819.1 311 GVGMLSTIVPVYQSEISPPHNRGKLACIEFSGNIIGYTTSVWVDYgcGFIeSNSSWRIPLLMQCVMGALLGI-GSLVIVESPRWLLDNDHDEEGmvvia 408
                 *******************************************997755558888*****************.455555555555555555555***** PP

       MFS_1 189 ...........................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgail 260
                                             + g++  ++ +++ +++ ++  + + +l    g++ ++++ p    e  g+ g   a+l+ ++ ++  + +
  CCE26819.1 409 nlygggdihdtkardeyreikmnvllqRQEGERTYAEMFRKYRTRVFIA-MSAQALAQLNGINVISYYAPYV-FESAGWVG-HDAVLMTGFNGITYFLS 504
                 ************99999999999988877777777779********664.4444444445777799999996.*******5.55666666666666666 PP

       MFS_1 261 allagrlsdrlgrrrrlllallllllaalglallavt...ssavllllvlvliGfglgfv.fpsllalasdlappeeagtasglfn.ta 344
                  +   +l+dr+grr++ll + +++++++ ++ ++      +++ +++l+++++  ++g    p+ + +  + +p + + + ++l + t 
  CCE26819.1 505 TIPPWYLVDRWGRRPILLSGAIAMTISLSLISYFIYLdirWTPRMVVLFVMIYNAAFGYSwGPIPWLYPPEILPLSVRSKGASLSTaTN 593
                 88888999****97777777777777777777777777777777777777778887777735556666667777777766666666455 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0037
       MFS_1 140 lggllasslgWravfyilaivsllafvlfllllpe 174
                 l ++l + + Wr +++++a++++++fv++++ +pe
  CCE26819.1 603 LTPILQERIQWR-LYLVHAFFCVVSFVIVYFTYPE 636
                 556666778899.89**********9997777765 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   7.8   6.3e-10   1.9e-06     233     336 ..     217     320 ..     205     326 .. 0.85
   2 !   17.8   2.2   3.2e-07   0.00097     225     331 ..     450     564 ..     427     576 .. 0.75
   3 ?   -2.6   0.2       0.5   1.5e+03     398     424 ..     608     635 ..     595     636 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 6.3e-10
       MFS_2 233 fllaalalgvl.nglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvg 329
                 fl+ +  +++       Y+++y+   +++++ ++ +++ i+a+++++++ ++   +g+++t+l g+++ +v+++l  ++  +++++++v  +iag+gvg
  CCE26819.1 217 FLFGYDQGVMSgIITGPYFIDYFNHpSKAQVGTMVAILEIGAFIASLVVGRVGDIIGRRRTILYGSCIFFVGGALQTAA--TSMAMMMVGRIIAGLGVG 313
                 444444333330344689****9999999999999999************************************99888..****************** PP

       MFS_2 330 vaallpw 336
                 ++ ++++
  CCE26819.1 314 MLSTIVP 320
                 *988865 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 3.2e-07
       MFS_2 225 aflillllfllaalalgvlnglllYyltyvlgngsaa..svfllvv..tisallgiplwqplakrlgkkntyllgal.ltivllvlvlll...qpsnll 315
                 +  +++++ +++ala++ + +   Yy+ yv +++ ++  +++l++    i  +l+++  ++l+ r+g++ + l+ga+ +ti+l+++ +++     +   
  CCE26819.1 450 YRTRVFIAMSAQALAQLNGINVISYYAPYVFESAGWVghDAVLMTGfnGITYFLSTIPPWYLVDRWGRRPILLSGAIaMTISLSLISYFIyldIRWTPR 548
                 556789999***********************8877622344444411455559999999*********888877652789999999999999566666 PP

       MFS_2 316 lflvllviagfgvgva 331
                 +++++++i++ ++g +
  CCE26819.1 549 MVVLFVMIYNAAFGYS 564
                 6666666666665554 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.5
       MFS_2 398 vlalrllyavlpavlllvallllvr.yp 424
                 + ++++ + ++ a +++v+++++++ yp
  CCE26819.1 608 QERIQWRLYLVHAFFCVVSFVIVYFtYP 635
                 5667777777777888888777777665 PP

>> MFS_5  Sugar-tranasporters, 12 TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   2.6   7.8e-07    0.0023      50     140 ..     228     317 ..     211     357 .. 0.73
   2 ?   -1.3   0.2      0.27   8.1e+02      38     110 ..     452     529 ..     433     543 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.8e-07
       MFS_5  50 dwlqgpyvyalyesygldkgdieilf.iagfgssllfgtivgsladkfgrkraclt.yailyilacitkhsgeykvlmigrvlggiatsllys 140
                   + gpy    +++   +k +++ +  i  +g +++   +vg + d  gr+r+ l   +i +++  +    + + ++m+gr++ g+   +l +
  CCE26819.1 228 GIITGPYFIDYFNH--PSKAQVGTMVaILEIG-AFIASLVVGRVGDIIGRRRTILYgSCIFFVGGALQTAATSMAMMMVGRIIAGLGVGMLST 317
                 45677776555554..3566665543133333.344556789999*******9875369**************************99887754 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.27
       MFS_5  38 tyllvyslavagdwlqgpyvyalyesygldkgd.i..eilfiagfgssllfgtivg..sladkfgrkracltyailyi 110
                 t +++ + a a   l+g  v   y  y ++    +  + ++++gf     f + +    l d+ gr+   l  ai+ +
  CCE26819.1 452 TRVFIAMSAQALAQLNGINVISYYAPYVFESAGwVghDAVLMTGFNGITYFLSTIPpwYLVDRWGRRPILLSGAIAMT 529
                 334445555666678888888888888887643132256889999776666555542368999999988887777654 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.8   2.4e-05     0.073      47     108 ..     247     308 ..     240     327 .. 0.82
   2 ?   -0.1   0.2     0.077   2.3e+02      59     112 ..     502     556 ..     493     565 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.4e-05
       MFS_3  47 vAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwllla 108
                 v  + a   +  f+ s+++G + D++ rR+ +l + ++  ++ +l t  + + ++ +  ++a
  CCE26819.1 247 VGTMVAILEIGAFIASLVVGRVGDIIGRRRTILYGSCIFFVGGALQTAATSMAMMMVGRIIA 308
                 44444555567899*********************************999999998888775 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.077
       MFS_3  59 fllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgl.lspwlllaltll 112
                 fl +i+   l D + rR +ll + + + ++  l+  + +l++  +p +++ + ++
  CCE26819.1 502 FLSTIPPWYLVDRWGRRPILLSGAIAMTISLSLISYFIYLDIrWTPRMVVLFVMI 556
                 66678888899**************999999999999999983467777766655 PP

>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.7    0.0007       2.1      15      62 ..     276     323 ..     270     328 .. 0.89
   2 ?    1.1   0.1      0.16   4.6e+02      41      58 ..     370     387 ..     343     392 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0007
     DUF2530  15 pvivvgtllWlvalvvllvvgdaleswlpvclaGlvvGllGlaiflwQ 62 
                   i+ g+++++v+  +  ++++    ++   +aGl+vG+l + + + Q
  CCE26819.1 276 RTILYGSCIFFVGGALQTAATSMAMMMVGRIIAGLGVGMLSTIVPVYQ 323
                 5688999******99999999999999**************9998887 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.16
     DUF2530  41 wlpvclaGlvvGllGlai 58 
                 +l+ c++G+++G+  l i
  CCE26819.1 370 LLMQCVMGALLGIGSLVI 387
                 6789********876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.39
# Mc/sec: 5734.13
//
Query:       CCE26820.1  [L=104]
Description: uncharacterized protein CPUR_00289 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.049   13.7   0.4       0.11   12.6   0.4    1.5  1  Complex1_LYR  Complex 1 protein (LYR family)


Domain annotation for each model (and alignments):
>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4     6e-06      0.11       6      36 ..      13      41 ..       5      45 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6e-06
  Complex1_LYR  6 LYRalLRearkfpdyntreyfrrriRdeFrk 36
                  LYR+lL +  +++++  r  +r + R+ Fr+
    CCE26820.1 13 LYRTLLQAV-QYSSPA-RYVARDQLRKAFRA 41
                  666666666.666666.7888********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 833.71
//
Query:       CCE26821.1  [L=194]
Description: related to regulator of mitochondrial iron homeostasis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-37  126.5   0.0    5.4e-37  126.2   0.0    1.1  1  Frataxin_Cyay  Frataxin-like domain


Domain annotation for each model (and alignments):
>> Frataxin_Cyay  Frataxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   0.0     3e-41   5.4e-37       1     106 [.      77     192 ..      77     194 .] 0.95

  Alignments for each domain:
  == domain 1  score: 126.2 bits;  conditional E-value: 3e-41
                    -HHHHHHHHHHHHHHHHHHHH.HHHHH--CTS.SEEEETTEEEEEETTS-EEEEEEEGGGTEEEEEES.SEEEEEEEET.............TEEE CS
  Frataxin_Cyay   1 lsdeeyhkladelldsleekleelaeeaeedeldveyssgvLtiefekkgtyvinkqppnkqIWlsspisgpkrfdyde............kgeWi 84 
                    ls+++yh+lad +l+s+ +++e+ +++ +ed+ dveys+gv+ti++ +kgtyvinkqppnkqIWlsspisgpkr+d+              kg+W+
     CCE26821.1  77 LSERAYHELADLYLESVLSEFEQQQDS-REDV-DVEYSAGVMTITVANKGTYVINKQPPNKQIWLSSPISGPKRYDWCVigegqtekegtgKGTWV 170
                    57899*********************9.6888.********************************************99************99*** PP

                    ETTTT-BHHHHHHHHHHHHHSS CS
  Frataxin_Cyay  85 skrdgseLkelLeeelskalge 106
                    + rdg +L el+ +el   ++e
     CCE26821.1 171 YARDGVSLSELIFQELGVVIEE 192
                    ***************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1487.37
//
Query:       CCE26822.1  [L=192]
Description: related to AP-3 complex subunit, sigma3 subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-42  144.9   0.0    4.5e-42  143.4   0.0    1.6  1  Clat_adaptor_s  Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.0   2.5e-46   4.5e-42       1     138 [.       1     161 [.       1     165 [. 0.93

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 2.5e-46
                     -EEEEEEE-TTS-EEEEEESSSS-CHHHHHHHHHHHHHHHTT-SSS......................-SEEEETT..EEEEEEEETTEEEEEEE CS
  Clat_adaptor_s   1 mikaililnkkgkvrlakfytavddkkkqklieevyelvsaRdskl......................sniveled..lkviYkryasLYFvviv 71 
                     mi+a l++n +g++rl+kfyt+++ + +q li e+ +lvs+R +                        s   e +d    v Y++ya+LYF+vi 
      CCE26822.1   1 MINAFLVFNGQGQPRLTKFYTQLETSIQQLLISEIFTLVSNRPAGScnflplpsllaesgtshstsppS-SQEQNDepSLVTYRNYATLYFIVIS 94 
                     899***************************************777699*****************9953.445555468899************* PP

                     ETTS-HHHHHHHHHHHHHHHHHHCTS-SHHHHHHCHHHHHHHHHCCEETTEES---HHHHHHCHHHH CS
  Clat_adaptor_s  72 deqeneliilelihlfvesLdkyfgnVceldlvfnfekvylildEivsgGeiletskkevlkrvell 138
                     +++e+ l++++li+++ve+Ldk+f+nVceldl+fnfe++++ l E+v+gG++ et+ ++++  v+  
      CCE26822.1  95 TSTESPLALIDLIQVYVEALDKLFENVCELDLIFNFETLHATLSEMVIGGVVVETNLDRIVSGVRAQ 161
                     *************************************************************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1485.05
//
Query:       CCE26823.1  [L=145]
Description: uncharacterized protein CPUR_00292 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   11.9   0.0        0.2   11.4   0.0    1.2  1  MlaC      MlaC protein


Domain annotation for each model (and alignments):
>> MlaC  MlaC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.1e-05       0.2      20      68 ..      13      61 ..       3      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.1e-05
                H-HHHHHHHHHHHTGGGB-HHHHHHHHHCCHHTTS-HHHHHHHHHHHHH CS
        MlaC 20 knpeelrekveellepyfdfermarlvlGkywrkatpeqrqrfveaFre 68
                ++ + +   + +  +++fd +++ar++  ++++ ++p+q+ rf +++++
  CCE26823.1 13 GKDSIVASVASKPALTVFDNPYTARKAWPPAVDHLNPAQQLRFEKKYKR 61
                5555566667778899*****************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1070.81
//
Query:       CCE26824.1  [L=1126]
Description: probable leucine--tRNA ligase, cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-38  132.6   0.0      1e-27   96.7   0.0    3.0  2  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    7.8e-15   54.5   0.5    1.1e-08   34.3   0.0    3.1  3  tRNA-synt_1g  tRNA synthetases class I (M)
    8.1e-11   42.1   1.4    1.8e-10   41.0   0.6    2.1  2  Anticodon_1   Anticodon-binding domain of tRNA
    6.4e-07   29.0   0.0    1.3e-06   28.0   0.0    1.4  1  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   9.4e-12   4.2e-08      17      86 ..      66     135 ..      55     200 .. 0.82
   2 !   96.7   0.0   2.2e-31     1e-27     109     601 ..     217     798 ..     192     799 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 9.4e-12
  tRNA-synt_1  17 ekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklga 86 
                  e +++ ++f  +   Py +G+lH Gh +  +  ++ + ++rm+Gk++l+ +G+ + G++i+a  +k + +
   CCE26824.1  66 ELREKVPKFFGTMAYPYMNGTLHAGHTFSASKVEFAVGVARMQGKRALFPMGFHCTGMPIKACADKLINE 135
                  556778999999999**********************************************999987744 PP

  == domain 2  score: 96.7 bits;  conditional E-value: 2.2e-31
  tRNA-synt_1 109 aeyaeeirkqvkrlGvsvDfdreylTldke..leeavkevfvrladkgliyrgkklvnwstklktalselEveykdkk.................dal 187
                  + +    +++++ lG ++D+ r  +T d +  + + v++ + rl +   i  gk+   +s k   +  + +    +                    a+
   CCE26824.1 217 KFFPPLTKRDLTSLGCRIDWRRSFITTDANpyYDAFVRWQMNRLKELNKIKFGKRYTIYSIKDGQPCMDHDRSEGEAVnpqeytalklkvlewapKAA 314
                  55556678999***************9865448899**************************999998888755555523333344444444444444 PP

  tRNA-synt_1 188 ihvafpladkeevklviaTTtPeTllgdtavavnpeldyv....itkeklilaeallkslvkke..sek...kiledergkeLegkevelpl..vnrk 274
                    ++ ++ d++++ lv aT +PeT+ g+t   v p + y+     ++ ++++ +   ++++ +    ++   +   +++g++++g  v+ pl  +++ 
   CCE26824.1 315 EALKGKIPDDASIFLVPATLRPETMYGQTCCFVGPKITYGlfkaGENSYYVVTDRAARNMAYQGilAQEgvvEKAAEIQGSDMVGTLVNAPLslHKEG 412
                  4444444777779***************************998656667788777777776655454443334445789***********99778999 PP

  tRNA-synt_1 275 ipiiaddyvdkeaGtGvVkiaPahdedDyevgkkynl.............evinildedgtlteea................................ 327
                  ++++  + v   +GtGvV   P   +dD+++ ++                  i ++ e   + + +                                
   CCE26824.1 413 VRVLPMETVLPTKGTGVVTSVPSDSPDDFATVTDLAKkadyygikkewaeLEIFPVIETPSYGDLCapflvkklkiaspkdtkpleeakelaykegfy 510
                  *****************************9765543333334457666654455666666666665999***************************** PP

  tRNA-synt_1 328 ......aefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkpiiyrateqWfvrvke.....ladaalkave..kvqfvpkskekryasw 412
                        ++f+g kv+ a+ kv ++l + g  +  ++ e +v   +rs++  i+ + +qW+    e      a + l++v+    +   + ++++++  
   CCE26824.1 511 qgilkvGDFKGEKVESAKPKVRSQLIDAGEAFAYSEPERKV--VSRSGDDCIVSLMDQWYLDYGEeswkkTALQWLDNVDgqGLNTWTQETKNSFEGV 606
                  *****************************999999888886..68****************98766644455566666668767777788999***** PP

  tRNA-synt_1 413 leniqdWciSRqrwWGhrip...lfvsketeevvvreelkelvagreee.eaekkalekeakdkl.kkekgelekdedvlDvWFsSgswpfstlgype 505
                  l+  ++W+  R    G ++p    f  ++  + +v      + + + ++  +++k l +   +++  +  + +    d  D   sS+ +p +tl+   
   CCE26824.1 607 LNWLNQWACARTYGLGSKLPwdpQFLVESLSDSTVYMAYYTVCHWLHKDlYGNEKGLGDIGAEQMtDEVWDYVFCRRDLGDDVLSSSKIPKATLE--- 701
                  *******************82224666665554443332222222222202233333333333442333455556789999999***********... PP

  tRNA-synt_1 506 edteelkkffpadmlleGlDiirgWvarlillslaltgsePf.kevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltli.lsdvgrdinl 601
                  + ++e++ f+p d+ ++G D i   ++  + + la++  e + + +  +g ++  +G Km Ks gN +   ++++kygada R +++   d ++d n+
   CCE26824.1 702 SMRREFEYFYPLDLRSSGKDLIPNHLTFFLYIHLAIFTPEYWpRGIRANGHLM-LNGEKMAKSTGNFMTLRELVDKYGADAARIAIAdAGDGVSDANF 798
                  4578*******************************999997724566666554.68*******************************88899999887 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.8e-07    0.0044       4      68 ..      77     141 ..      74     192 .. 0.90
   2 ?    0.2   0.1     0.053   2.4e+02     177     239 ..     560     627 ..     542     642 .. 0.79
   3 !   34.3   0.0   2.4e-12   1.1e-08     289     370 ..     719     802 ..     698     809 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.8e-07
                   EE--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHH CS
  tRNA-synt_1g   4 ttalpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelve 68 
                   t a pY+ng+lH Gh  ++ +    +   r++g+  lf  g    G+pi+  A+k   + +++ e
    CCE26824.1  77 TMAYPYMNGTLHAGHTFSASKVEFAVGVARMQGKRALFPMGFHCTGMPIKACADKLINEIAKFGE 141
                   89*************************************************99997766666655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.053
                   EEE.EEEEEE-GG..GGHHHHHHHH.HH-TT....SHHHHHHHH.HHHHT----EE-ESS-SSS-EETT CS
  tRNA-synt_1g 177 evketehlffkls..kfekklkewieeeeke....leenvkkivkewlkegLkdlaisrdldwGipvPg 239
                   +v+  ++++++    +++k+  +w+++ + +    +++++k+  + +l+  L+++a +r+   G ++P 
    CCE26824.1 560 IVSLMDQWYLDYGeeSWKKTALQWLDNVDGQglntWTQETKNSFEGVLNW-LNQWACARTYGLGSKLPW 627
                   5556677777765115788899999766655778899*******999999.********9999999884 PP

  == domain 3  score: 34.3 bits;  conditional E-value: 2.4e-12
                   EGGGHHHHHTHHHHHHHH..TT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-HHH CS
  tRNA-synt_1g 289 gkdiikFHtifwPaillg..aelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfswed 370
                   gkd i+ H  f+  i l+  +    p+ + a+++l+++g+K+ kS g++++ +e+++++ ad+ R  +a +++  +D++f+++ 
    CCE26824.1 719 GKDLIPNHLTFFLYIHLAifTPEYWPRGIRANGHLMLNGEKMAKSTGNFMTLRELVDKYGADAARIAIADAGDGVSDANFEEDV 802
                   9****************98888889*******************************************************9875 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.6     4e-14   1.8e-10       5     145 ..     841     965 ..     837     985 .. 0.79
   2 ?   -2.2   0.0      0.78   3.5e+03     107     143 ..     991    1045 ..     975    1051 .. 0.60

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 4e-14
  Anticodon_1   5 lselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqreeeel.gkkes 101
                   +e+n+++ e+ e y + +++ a++a+ + ++ +  d+y e+      ++++       ++++ ++e    l+a ++P+ +E++w     e+ +k+++
   CCE26824.1 841 DNEMNSAAHEAIEQYTQTNYKLALKAALYELTGAR-DFYREACAAAGIKMHK-------QLVFRYMEMQALLMAVIAPHWAEHIW----LEVlKKDST 926
                  5899***********************99988877.*******999888776.......9*************************....555388899 PP

  Anticodon_1 102 imlaewpe.kaeel..ekeleeeevellkeivkairklrselkikps 145
                  i +a +p+  a ++        ++ ++   + +++ +++s +++  +
   CCE26824.1 927 IQNATFPQvPAVDAglS-----AKRDY---VRNTASNVNSAEGLQLK 965
                  99999**8666554422.....24566...55555555544444444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.78
  Anticodon_1  107 wpe.kaeel..ekel.e..............eeevellkeivkairklrselkik 143 
                   +p+ +a++    ke+ +               +++  +k+++  +++l+++l+ +
   CCE26824.1  991 FPAwQAKYIdlLKEMwDpsaksvndkdlngrIAKMGEMKKAMPFAQALKKRLQAG 1045
                   5544444443322222133334444555577778888899999999999888765 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.9e-10   1.3e-06     207     282 ..     712     788 ..     701     804 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.9e-10
                   SEEEEEEEGGGTTTHHHHHHHHHHHHSS.S--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHS CS
  tRNA-synt_1e 207 eidihsGGiDLafPhhenelaqseaafd.kqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRlllls 282
                    +d+ s G+DL+  h    l  + a f  + + +    nghl+++gekm+ks +nf+t+++++ k+ + + R++++ 
    CCE26824.1 712 PLDLRSSGKDLIPNHLTFFLYIHLAIFTpEYWPRGIRANGHLMLNGEKMAKSTGNFMTLRELVDKYGADAARIAIAD 788
                   68999******9999999999******956677788899*******************************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.50
# Mc/sec: 6770.74
//
Query:       CCE26825.1  [L=86]
Description: uncharacterized protein CPUR_00294 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-21   74.4   0.2    5.3e-21   74.1   0.2    1.1  1  zf-CSL         CSL zinc finger
     0.0064   16.6   0.2     0.0064   16.6   0.2    1.5  2  Zn-ribbon_8    Zinc ribbon domain
  ------ inclusion threshold ------
      0.087   11.4   0.0        0.1   11.1   0.0    1.0  1  Terminase_GpA  Phage terminase large subunit (GpA)
       0.14   12.1   2.8       0.27   11.2   2.8    1.5  1  Prok-RING_1    Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> zf-CSL  CSL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.2   1.2e-24   5.3e-21       1      59 []      12      66 ..      12      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 1.2e-24
                EEEEGGGSEEETTTTEEEEEETTSSEEEEEHHHHHTT....--EEEETTSSEEEEEE-- CS
      zf-CSL  1 develedfefdeeeesyyypCRCgdeFelteedleegaegaevvvqCssCSLwikVkfa 59
                d++e+ed++fd+  e y+ypC+Cgd+F++ + dl+++    ++++ C+sCSL+i+V+f+
  CCE26825.1 12 DVIEIEDMTFDSALELYHYPCPCGDRFQIALGDLRNE----DDIAVCPSCSLMIRVIFD 66
                689**********************************....****************96 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1         2   8.9e+03       2       5 ..       9      12 ..       9      13 .. 0.88
   2 !   16.6   0.2   1.4e-06    0.0064       3      34 ..      27      58 ..      27      64 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
  Zn-ribbon_8  2 PiYe 5 
                 PiY+
   CCE26825.1  9 PIYD 12
                 9**8 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.4e-06
  Zn-ribbon_8  3 iYeYrCeeCghefe.vlqsisdaplta.CPeCgs 34
                 +Y Y C  Cg +f  +l     ++++a CP+C s
   CCE26825.1 27 LYHYPCP-CGDRFQiALGDLRNEDDIAvCPSC-S 58
                 699***9.9*****87777776666777****.4 PP

>> Terminase_GpA  Phage terminase large subunit (GpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.3e-05       0.1     184     237 ..      15      61 ..       8      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.3e-05
  Terminase_GpA 184 riealyeesdqrryyvpCphCgelqelsferlkwpegeaeekaryvCphcgsli 237
                    +ie+++ +s  + y+ pCp Cg+ ++++  +l+ +++        vCp c  +i
     CCE26825.1  15 EIEDMTFDSALELYHYPCP-CGDRFQIALGDLRNEDD------IAVCPSCSLMI 61 
                    7999***************.********999988666......78999998776 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.8   6.1e-05      0.27      13      26 ..      44      57 ..      27      59 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.1e-05
  Prok-RING_1 13 elkeedDiVvCpeC 26
                  l++edDi vCp C
   CCE26825.1 44 DLRNEDDIAVCPSC 57
                 46678********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 661.64
//
Query:       CCE26826.1  [L=718]
Description: related to adrenoleukodystrophy protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.7e-101  337.7   1.1   7.2e-101  337.1   1.1    1.3  1  ABC_membrane_2  ABC transporter transmembrane region 2
    6.5e-17   62.3   0.0    1.5e-16   61.2   0.0    1.7  1  ABC_tran        ABC transporter
    0.00015   21.6   0.0    0.00073   19.4   0.0    2.1  3  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
  ------ inclusion threshold ------
      0.015   15.8   0.4       0.13   12.7   0.0    2.1  2  AAA_23          AAA domain
      0.069   12.6   0.4       0.22   10.9   0.0    2.0  2  SMC_N           RecF/RecN/SMC N terminal domain
      0.069   12.5   0.1        0.3   10.4   0.0    1.9  2  Mg_chelatase    Magnesium chelatase, subunit ChlI
        0.1   12.4   0.0       0.24   11.2   0.0    1.6  1  AAA_29          P-loop containing region of AAA domain
        1.4    9.3   6.5       0.53   10.6   0.2    2.7  3  AAA_16          AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_membrane_2  ABC transporter transmembrane region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.1   1.1  3.2e-104  7.2e-101       1     269 []     104     372 ..     104     372 .. 1.00

  Alignments for each domain:
  == domain 1  score: 337.1 bits;  conditional E-value: 3.2e-104
  ABC_membrane_2   1 LlkilipklkskeallllvlllllvlrtllsvlvaqldgklvkalvaknvraFvlsllkfallavpasfvnsalkYltqkLalafRkrLtkhlls 95 
                     Llki++p+++s ea+ l+ ++++l+lrtl+s++va +dg++vkalv++n ++F+  +l+++++avpa+f+ns+l Y++++L+l++R+r+t+++++
      CCE26826.1 104 LLKIVVPSWRSAEARTLVSHSFFLLLRTLISLRVAAMDGAIVKALVKGNGKEFLSRILWWMVIAVPATFTNSMLGYHQAQLSLKYRTRITHYIHD 198
                     89********************************************************************************************* PP

  ABC_membrane_2  96 eYlknrtyYkvsnlderidnpDqritqDvekFtsslssLlsglvkpildvilftfiLwslsgtlgllllllyvllatvilriigpplgklvaeee 190
                     +Yl+n t+Y +s+ld+ri+npDq+i+ Dv+kF++sl++L+s+l+kp+ld+ ++t+ L +++g +g++++ l v l+++++r+++pp+gk+va+e+
      CCE26826.1 199 KYLSNLTFYGISALDDRIKNPDQLISVDVSKFSNSLAELYSNLAKPLLDMTIYTYSLSKSVGGEGVVFMALLVQLSANVMRVLTPPFGKYVADEA 293
                     *********************************************************************************************** PP

  ABC_membrane_2 191 klegefRylhsrlitnaEeIAFyrGeevEkkqlqrrfkslidnlrrilsrrlrlgiieafvlkYlasilgyvlvalpif 269
                     +legefRy+hsrli+++EeIA+y+G+ vEk++l++ + +li+++++il+rr+++g++e+fv+kY++++lg++l+++p+f
      CCE26826.1 294 RLEGEFRYQHSRLIDYSEEIALYSGHDVEKDTLDKGYFTLIKHVNYILRRRFYHGFMEDFVIKYFWGALGLLLCSVPVF 372
                     *****************************************************************************98 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   6.6e-20   1.5e-16       2     137 .]     489     633 ..     488     633 .. 0.83

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 6.6e-20
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..............esdeeie 86 
                 k +s++l++g  + +vG+nG+GKS+L+++l gl     G++           ++   + i +lpq p l +++ +r++                de++ 
  CCE26826.1 489 KALSFSLSHGDHLLVVGPNGCGKSSLFRILGGLWPVYGGTV-----------HKPPFHAIFYLPQRPYLSRGS-LRQQiiypdslrqmrargITDEDLL 575
                 789**************************************...........567778899999999999999.8888899998887777776666677 PP

                 HHHHHSTTGG....TTCBGESTTS...GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxx....xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglke....lkdtvvkssp...ssLSgGqkqrvalarallkkpkllllDEpta 137
                  +l+ l+l++     +d+ ++ ++     LSgG +qrva+ar++  +p+  +lDE+t+
  CCE26826.1 576 SILHILDLQHlvdlYPDSGWDAEAewrDVLSGGLQQRVAMARLFYHRPRYAILDECTS 633
                 7777777777444533333333336779****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.1   2.4e+03     132     210 ..      19      97 ..       6     156 .. 0.67
   2 ?   -3.4   0.0       2.9   6.5e+03     175     220 ..     195     247 ..     191     264 .. 0.71
   3 !   19.4   0.0   3.3e-07   0.00073       3      24 ..     502     523 ..     501     554 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
      AAA_21 132 vsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrslklveielsdlgegeelia 210
                 +++  +l+ ++++ ++++  ++lll l +   ++i+ + ++ +    ++e r+++  ++s+ ++  ++s+ +++ + ++
  CCE26826.1  19 INNLTTLYLSHRTRLSRALCVTLLLALINRIRHAIAEQKAASAREASQRETRRATVSSSSSEPNAEPASKKKVALDRHF 97 
                 5555556666666666666666666555555557777777777777777777777777777777777777665554443 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.9
      AAA_21 175 yfgfakekrllqrlvrslklveielsdlgegeeliasvderlrer.......g 220
                 y++ + + +l++  ++ l+++  +++ l  ++++ +s++++++++       +
  CCE26826.1 195 YIHDKYLSNLTFYGISALDDRIKNPDQLISVDVSKFSNSLAELYSnlakpllD 247
                 66667777888888888888888888888888888888888777655555551 PP

  == domain 3  score: 19.4 bits;  conditional E-value: 3.3e-07
      AAA_21   3 vliGpNgsGKSnLLdaldllar 24 
                 +++GpNg+GKS+L+++l +l+ 
  CCE26826.1 502 LVVGPNGCGKSSLFRILGGLWP 523
                 68***************99953 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.9e-05      0.13      21      38 ..     500     517 ..     488     528 .. 0.82
   2 ?    0.8   0.1      0.27     6e+02     143     190 ..     687     711 ..     635     718 .] 0.59

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.9e-05
      AAA_23  21 ltlItGpNGaGKTTildA 38 
                   l++GpNG+GK+++++ 
  CCE26826.1 500 HLLVVGPNGCGKSSLFRI 517
                 5589***********986 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.27
      AAA_23 143 feefelkdkkerleelekeleeledekkllekleqekekekeleelee 190
                 ++++el+d+ke                       +++ k  ++ ele+
  CCE26826.1 687 EKRLELEDEKE-----------------------NLEVKLRQIPELER 711
                 22233333333.......................22233333333333 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       2.2     5e+03      69     104 ..      64      98 ..      48     101 .. 0.75
   2 ?   10.9   0.0    0.0001      0.22      26      41 ..     500     515 ..     490     518 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.2
                 TTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  69 kekasvkkaeveitfdnedkklkiekeevsisrrvk 104
                 ++++++ +a+v+   ++++++ + +k++v + r+ +
  CCE26826.1  64 ASQRETRRATVSSSSSEPNAE-PASKKKVALDRHFF 98 
                 567888889999987777777.88888888887766 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0001
                 EEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnll 41 
                 +  +vGpNG+GKs+l+
  CCE26826.1 500 HLLVVGPNGCGKSSLF 515
                 5689**********97 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.6   1.3e+03     106     146 ..     261     301 ..     257     306 .. 0.81
   2 ?   10.4   0.0   0.00013       0.3      13      47 ..     489     523 ..     484     528 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.6
  Mg_chelatase 106 hnGvLfLDElpefkrkvlevLRePledgevtisrakakvef 146
                    +Gv+f+  l +++++v+ vL  P+ +     +r + ++++
    CCE26826.1 261 GEGVVFMALLVQLSANVMRVLTPPFGKYVADEARLEGEFRY 301
                   68*******************99998877766666666666 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00013
  Mg_chelatase  13 raleiaaaGgHnlllvGppGsGKtmlakrlpsllp 47 
                   +al  + + g +ll+vGp G+GK+ l + l +l p
    CCE26826.1 489 KALSFSLSHGDHLLVVGPNGCGKSSLFRILGGLWP 523
                   678888888899**************999988877 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.24      17      39 ..     493     515 ..     487     516 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
      AAA_29  17 ieidlkgatlltGpsGsGKSTll 39 
                 ++++  +  l++Gp+G GKS+l+
  CCE26826.1 493 FSLSHGDHLLVVGPNGCGKSSLF 515
                 455544599***********996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.19   4.2e+02      75     127 ..      45     105 ..      18     137 .. 0.53
   2 ?   10.6   0.2   0.00024      0.53      25      42 ..     499     516 ..     486     527 .. 0.81
   3 ?   -3.7   0.1       5.9   1.3e+04      84     114 ..     683     712 ..     678     715 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.19
      AAA_16  75 alareellrqlldeaesaeleawrekleeala.....avpelagaea......srllellkrll 127
                 ++ + ++  ++++++++ ++++++++ +++++     + p++++a++      +++++ l rll
  CCE26826.1  45 LI-N-RIRHAIAEQKAA-SAREASQRETRRATvssssSEPNAEPASKkkvaldRHFFRSLLRLL 105
                 22.2.333333333222.3333333333333355555333333333355666655555555554 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00024
      AAA_16  25 elvllsGesGvGKsslvr 42 
                   +l++G+ G+GKssl r
  CCE26826.1 499 DHLLVVGPNGCGKSSLFR 516
                 689************976 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5.9
      AAA_16  84 qlldeaesaeleawrekleealaavpelaga 114
                  l++e++  ele+ +e le  l+++pel++ 
  CCE26826.1 683 RLDAEKRL-ELEDEKENLEVKLRQIPELERR 712
                 55555444.8899999999999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5157.20
//
Query:       CCE26827.1  [L=411]
Description: uncharacterized protein CPUR_00296 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-14   53.5   0.0    3.8e-14   52.8   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.7e-06   28.6   0.0    4.8e-06   27.2   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
      8e-06   26.4   0.0    1.5e-05   25.5   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    6.4e-05   23.6   0.0    0.00067   20.4   0.0    2.2  1  Methyltransf_12  Methyltransferase domain
    0.00031   20.6   0.0      0.061   13.1   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
      0.002   17.5   0.0      0.024   14.0   0.0    2.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0082   15.7   0.0      0.016   14.8   0.0    1.4  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.024   13.9   0.0      0.038   13.3   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
      0.087   12.2   0.0       0.14   11.5   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   1.9e-17   3.8e-14       7     120 ..     164     276 ..     152     308 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 1.9e-17
  Methyltransf_23   7 eelsdklerllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpd 97 
                      + l ++ ++l+p  + ++++LdiG+GtGi++ +  ++    +v g+D+ p++ ++++ +  + ++d++     +  ++ +d+++ r+++  ++d
       CCE26827.1 164 MMLMENKLFLAPIGDHPQKILDIGTGTGIWAIEVGDKYPsaKVRGIDITPIQPKWVPpNVLFIIDDCE----LDWLEKDIDFAHFRFTIAVLKD 253
                      45668889999999********************55533359**************999999999999....888999**************** PP

  Methyltransf_23  98 ppellrqiatllkpgGylllsep 120
                        ++l ++++ l+pgG+l+l+e 
       CCE26827.1 254 TSKVLGHAFESLRPGGWLELQEL 276
                      ********************995 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   2.4e-09   4.8e-06       1      97 []     183     269 ..     183     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 2.4e-09
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      +Ld+G+GtG +++++ +++++akv g+Di++ + + +        +nv f+  d+e l+  ++ +D+ + ++++ +l+  d+ k+l ++++ L+
       CCE26827.1 183 ILDIGTGTGIWAIEVGDKYPSAKVRGIDITPIQPKWVP-------PNVLFIIDDCE-LDWLEKDIDFAHFRFTIAVLK--DTSKVLGHAFESLR 266
                      8******************99**********9987654.......57799999984.555566799999998888876..788*********** PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       CCE26827.1 267 PGG 269
                      **9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   7.7e-09   1.5e-05       1      94 [.     184     271 ..     184     273 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 7.7e-09
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      Ld+G+GtG+ a ++ +++  a+v g+D+++ + k++     ++  +v f+  d+e l   ++ +D+   ++++  ++d +k+l  +   L+pgG
       CCE26827.1 184 LDIGTGTGIWAIEVGDKYpsAKVRGIDITPIQPKWV-----PP--NVLFIIDDCE-LDWLEKDIDFAHFRFTIAVLKDTSKVLGHAFESLRPGG 269
                      8**************9999*************9888.....33..3778888888.9************************************* PP

                      EE CS
  Methyltransf_11  93 ll 94 
                      +l
       CCE26827.1 270 WL 271
                      98 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.4e-07   0.00067       1      99 []     184     271 ..     184     271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.4e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhlkdirevldnirklL 93 
                      L+iG+GtG  + ++ +k p +++ g+Di p +         k+ +     + l+ +d+ +ld   +  D  +  +++ +lkd+ +vl ++ + L
       CCE26827.1 184 LDIGTGTGIWAIEVGDKYPSAKVRGIDITPIQP--------KWVP----PNVLFIIDDCELDWLeKDIDFAHFRFTIAVLKDTSKVLGHAFESL 265
                      8*****************************999........4554....222333333333333369*************************** PP

  Methyltransf_12  94 kpgGrl 99 
                      +pgG+l
       CCE26827.1 266 RPGGWL 271
                      ****97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.1e-05     0.061       6      38 ..     182     213 ..     178     215 .. 0.90
   2 !    5.2   0.0    0.0083        16      70     125 ..     234     284 ..     220     325 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.1e-05
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                      ++lD+G+GtG  ++e     +p a+v GiDi++
       CCE26827.1 182 KILDIGTGTGIWAIEVG-DKYPSAKVRGIDITP 213
                      79***************.6699*********97 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0083
  Methyltransf_31  70 ledekfDlilsnevlnaladpdkileeiervlkpggilliedprllaelpakveee 125
                      + ++ +D+ + + +++ l+d  k+l+ +++ l+pgg l +++ +     p  ++++
       CCE26827.1 234 WLEKDIDFAHFRFTIAVLKDTSKVLGHAFESLRPGGWLELQELQ-----PVPMCDD 284
                      333679999999999*********************99998888.....5444444 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.2e-05     0.024      46     154 ..     178     276 ..     158     283 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
                      --TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHH CS
  Ubie_methyltran  46 krgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkea 139
                       +++k+lD+ +Gtg +a+++ d+   + kv ++Di +   k            n+ f+  +  eL+  ++  D+    f +  + D++k+L +a
       CCE26827.1 178 DHPQKILDIGTGTGIWAIEVGDKY-PSAKVRGIDITPIQPKW--------VPPNVLFIIDDC-ELDWLEKDIDFAHFRFTIAVLKDTSKVLGHA 261
                      5689****************9986.678*******9854332........234788887665.799999999********************** PP

                      HHHEEEEEEEEEEEE CS
  Ubie_methyltran 140 yrvlkpGGrlvvlef 154
                      +  l+pGG l   e+
       CCE26827.1 262 FESLRPGGWLELQEL 276
                      ********9877665 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   7.9e-06     0.016      26      63 ..     175     211 ..     153     214 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.9e-06
                 HCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  26 tlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                  + + + +k+lD+G+G+G+ ++++ +++p+a+v  +d+
  CCE26827.1 175 PIGD-HPQKILDIGTGTGIWAIEVGDKYPSAKVRGIDI 211
                 3333.6678************************99997 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.9e-05     0.038      64      95 ..     181     212 ..     131     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
                     SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  64 kslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     ++++D+G GtG  a ++  +yP+ kv   D+ 
      CCE26827.1 181 QKILDIGTGTGIWAIEVGDKYPSAKVRGIDIT 212
                     689**********************9999986 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     7e-05      0.14     162     195 ..     180     214 ..     167     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7e-05
        PrmA 162 geevlDvGtGSGiLaiaa.akLgakkvvavDiDev 195
                  +++lD+GtG+Gi ai +  k   +kv ++Di ++
  CCE26827.1 180 PQKILDIGTGTGIWAIEVgDKYPSAKVRGIDITPI 214
                 579*************6527999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3055.65
//
Query:       CCE26828.1  [L=307]
Description: uncharacterized protein CPUR_00297 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-64  216.9   6.0    3.4e-64  216.6   6.0    1.1  1  Egh16-like  Egh16-like virulence factor


Domain annotation for each model (and alignments):
>> Egh16-like  Egh16-like virulence factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.6   6.0   1.9e-68   3.4e-64       1     183 []      16     276 ..      16     276 .. 0.99

  Alignments for each domain:
  == domain 1  score: 216.6 bits;  conditional E-value: 1.9e-68
  Egh16-like   1 saHgvitkvtGangvngpglgvadgtprdgtsrasgsqaDttvfrdkeikkkkasglGrtlgsgkvniaaeiaklm....................... 76 
                 s+H++i +++Gangv++pgl+v+dgtprd+  +++g+qaDt ++rd+ei+++k  ++G+t+g+gkv+iaa++a++m                       
  CCE26828.1  16 SGHALIRSIEGANGVTMPGLTVTDGTPRDCVVNSCGAQADTGIIRDAEIASGKVGPMGSTQGGGKVDIAAHVANFMgtgaalpankgaqsatgvednlg 114
                 69************************************************************************************************* PP

  Egh16-like  77 .....................................................agaesglptvsaggtltmtvhqvnqDGaGpltckiDststgtdaka 122
                                                                      +gae+glpt+ ++g+++++++q+nqDGaGp t+ iD ts+gtdaka
  CCE26828.1 115 glfgsakdrrdeykrqmgdlfsglnglpiigvvggggdrktypvetlngdmrgQGAEKGLPTCDDNGVVSLVYRQINQDGAGPTTASIDGTSGGTDAKA 213
                 *****************************************************99******************************************** PP

  Egh16-like 123 lqkaevtknvpGk..gglsaakntdfplkvqlpagltCtGtvggaknvCivRceNaakaGPFG 183
                 +q+a+++k+vpG+  +gls ++ntd+p+++++p+g+tC+G+v+g+knvCivR++N+a aGPFG
  CCE26828.1 214 FQSAQILKDVPGSglSGLSISTNTDYPMQIKMPDGMTCDGEVAGVKNVCIVRVRNQAFAGPFG 276
                 ************9999**********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2449.78
//
Query:       CCE26829.1  [L=107]
Description: uncharacterized protein CPUR_00298 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      133  (0.00741815); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 886.84
//
Query:       CCE26830.1  [L=2092]
Description: related to dock180 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.4e-121  404.7   0.0   6.3e-121  403.8   0.0    1.5  1  DOCK_N    DOCK N-terminus
    1.1e-33  116.7   0.0    3.4e-33  115.1   0.0    1.9  1  DOCK-C2   C2 domain in Dock180 and Zizimin proteins
    1.4e-33  116.3   1.2      5e-33  114.5   0.2    2.2  2  DHR-2     Dock homology region 2
      4e-06   26.3   0.0    1.3e-05   24.7   0.0    1.9  2  SH3_1     SH3 domain
    0.00084   19.2   0.0     0.0037   17.1   0.0    2.1  2  SH3_9     Variant SH3 domain
  ------ inclusion threshold ------
      0.067   12.9   0.0       0.15   11.7   0.0    1.7  1  SH3_2     Variant SH3 domain


Domain annotation for each model (and alignments):
>> DOCK_N  DOCK N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.8   0.0  2.1e-124  6.3e-121       1     377 []     204     645 ..     204     645 .. 0.95

  Alignments for each domain:
  == domain 1  score: 403.8 bits;  conditional E-value: 2.1e-124
      DOCK_N   1 pslkigdetvvsaeeplvdEiascLREWhsl.lkelllkrkyelfdklsklieeLdlaRrqlLsgvltadelkelrektvwrLvrgNkllglDviVRdp 98 
                 p lkigdet++s++epl+dEiascLREWhs  l+e+ll+r+y  +dkls+li++L+l+R+q+L++vlt++e+++lre+tvw+Lvr+Nkl+g+++iVRdp
  CCE26830.1 204 PLLKIGDETPTSSSEPLIDEIASCLREWHSKnLHEILLSRQYADLDKLSRLITSLNLSRQQFLYNVLTSHEYEALRETTVWDLVRVNKLCGGEIIVRDP 302
                 569************************************************************************************************ PP

      DOCK_N  99 egrgrvdtdedSvvelyklqsemalldespkikeeksrsekseseaaslhhllldlksfvgaslgeeaelffsLydkke...skflsEnflvrlnksgl 194
                 ++rgr++t++dSvve+++lqs+m++lde+p++++          e++slhhllld+k f+g s  e+++l++ L++k+     + lsE f+v++++ g+
  CCE26830.1 303 AARGRILTGDDSVVEVTRLQSVMSILDEPPRPSV----------ESTSLHHLLLDVKGFAG-SSSEATTLVLFLVSKSRhdkLSVLSEAFMVEIPAGGS 390
                 **********************************..........*****************.6777***********9988779*************** PP

      DOCK_N 195 pkelaksleklrtLFtDLsskDlgd...areklyLVvkivrngrv....................................smelkskkkrsassrses 254
                 +  +a++ ++ rtLF+DLs++D+gd    +++lyL vk++++++v                                    s++++sk++r++ sr++ 
  CCE26830.1 391 IGGIAQD-TSSRTLFVDLSAQDIGDapsVENELYLAVKVLASQQVmtatktisrpgttndcpasrenskmsassgsksmrrSLMWGSKSGRPNISRGS- 487
                 ******6.6***********************************99999**********999999999999999999999999999999999999976. PP

      DOCK_N 255 askkseekeessets..................esssakkektvrRpfGvavldlsdlkglkqsdeekehvlkiyvp...................ene 316
                    k e+ +e++ ++                   s+++++ + v+R++Gv++l+l+++  +kq ++e e+vl+i++p                   +++
  CCE26830.1 488 PLPKMESVSEQHGQQivtpaecddppgtastraGSNTPDSAQAVQRTVGVGILKLNSI--MKQ-NSEGEQVLTIWSPttnrvsvdaessaaassssSSS 583
                 45553333344444467779************98888999999***************..***.*******************************9999 PP

      DOCK_N 317 sdfdqlhediiksrtkkyekspraeglqVsLklf.hgdleqlrkenptllrgvaltrKlGFp 377
                 +  d l+++++++++++yeks+r e+lqVsL++f h+++e+l+k++ptll+gv++t+K+GF+
  CCE26830.1 584 DGLDALIRELMDNANGRYEKSRRGERLQVSLQAFnHPEAEALIKATPTLLSGVSQTNKMGFS 645
                 99***********************************************************8 PP

>> DOCK-C2  C2 domain in Dock180 and Zizimin proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   1.1e-36   3.4e-33       1     194 [.     648     842 ..     648     843 .. 0.87

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 1.1e-36
     DOCK-C2   1 pgdvrNdlYvtlksgefss..........kgskssa........kniqvtvevrdsdgerlekaiylgsgeelvsefrsvvlyhnkqptfneeiKialp 81 
                 p++ r+d+Y+tl+s+++ +                +         n+qvt+evr  +g+r e++iy gs++ +v++f+s+ +++ +   +n++i+++l+
  CCE26830.1 648 PTKSRSDIYLTLNSASLARqnllsrcggsA-----TsmpsalrgANFQVTLEVRGPEGKRFENCIYEGSNKMPVTTFKSSTTERGEA--WNQTIRLSLS 739
                 7999*************8777777665441.....044566777****************************************999..********** PP

     DOCK-C2  82 ieltekhHLlFtfrhvsceekkkekdkeeeekpfgyaflpLlkedgraflkdgehelpvyk.........kelpp....sgYlslpssrtssseeqkgp 167
                 + +++++H+++ + +v+              +pf++a++pL++   +af+ dg h +++yk                  +gYls p+  +++ e++   
  CCE26830.1 740 PCDVSTAHVVMFLCDVPG-------------PPFAVAHMPLWD--REAFIADGRHGVLLYKvdentfsalP---GpsgkGGYLSVPWAPRGRAEHS--- 817
                 *****************5.............8**********5..899************98877665441...155668******9966666666... PP

     DOCK-C2 168 sekwldnskdtfkvrtklcSTiltqde 194
                  e+ ++++ +++ v+t+lcST ++qd+
  CCE26830.1 818 -EN-VTGPLAMLFVSTFLCSTRFSQDR 842
                 .55.99********************7 PP

>> DHR-2  Dock homology region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.47   1.4e+03      34      77 ..     963    1014 ..     939    1020 .. 0.64
   2 !  114.5   0.2   1.7e-36     5e-33      49     454 ..    1433    1800 ..    1383    1802 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.47
       DHR-2   34 neerlkeslktinsyaksdkelkes.........sfpeqvkellkrlrtvlka 77  
                    +++++ lk+i++  +++k +ke          +f+ q++++ k+l  ++++
  CCE26830.1  963 TFKVVRHILKFITQAREQQK-AKEAgigitsssqTFTRQLRSIFKALDGMMRN 1014
                  45778899999988777555.33333544444446666666666666655555 PP

  == domain 2  score: 114.5 bits;  conditional E-value: 1.7e-36
       DHR-2   49 aksdkelkessfpeqvkellkrlrtvlkatvkmk...eekedpemladlqyslansyk..sspdlritwLeslaekhaenenfsEaaqclihaaaLi 140 
                   +      +  +++ v++l+  l ++l+ +v ++   +++ +   ++   ++l+++++  +++++ ++++++la+ +ae++n++Ea  +l ++a+L+
  CCE26830.1 1433 HE----IPDHPLHAAVRDLVGTLDEFLDLLVAVHsggDANGEATHIIIHRLRLMEFLRdmQKEEIFVRYVHQLATLQAESGNHAEAGLALRLHADLY 1525
                  33....55667888889998888888888888876554444444444445789999997677*********************************** PP

       DHR-2  141 aeylkllkkipkklgasaFekispnvlkeesesasalkedsgvcdseefteeglvellekaiellkkgelyElaielyklliplyekk.rdykklse 236 
                      ++     k+l         p++   ++++++++ke                +++ ++i+++++ge +  a + yk+l+ +ye++  d+ kl++
  CCE26830.1 1526 DWDPTRQ---VKPLAE-------PEF---PAQTQFERKE----------------KIYFDMIKQFEEGESWSNALTAYKELQVQYESNvFDFAKLAR 1593
                  *322222...122222.......333...3455677777................8999*****************************9******** PP

       DHR-2  237 ihkklaelyekivetsksekRlfgtYyRVgFyGkkF.eeldgkeyvYkepkltrLseiserlksqysekfgeekveiikdskpvdkseldpdkaYiq 332 
                  + + +a++y++i +    +++l ++Y++V F G +F    ++k ++Y +   +r +++++r+++qy+++          +s+ +  +  + + +++ 
  CCE26830.1 1594 TERAIATIYDTISK----SEKLIPRYFKVVFKGLGFpTGVRDKAFIYEGAPTERAAAFTDRIQEQYPSAQIV-------TSDGI--D--EVEGQFLV 1675
                  **************....89***********************************************99873.......66666..3..45699*** PP

       DHR-2  333 itaVePyfeeeel...kerktsFernnnvnrFvfetPFtksgkkaqgsleeqwkrrtiLttensfPylkkRlevvskeeielsPievaieeiekkte 426 
                  + +V+P  +   +   + r+ +  r + v+    +  Ft +   ++g ++e   ++ ++ t++ fP++++R+e+v+++ei+l   e a+e i +kt+
  CCE26830.1 1676 VSSVTPHRDLTHQvyqRARVPQVIRDFLVSSHPQSFSFTTKR-STSGPVREHSAEKAVFHTAEPFPTILRRSEIVDSQEIQLDAHETALERIVRKTQ 1771
                  ******999666645446666666666666666666677776.67899************************************************* PP

       DHR-2  427 eleaaika.eppnlktLqmlLqGsvavqV 454 
                  e++a+ ++ +  +   +++lL   v+++V
  CCE26830.1 1772 EMTALERRfADGEDGGVSQLLLDAVSISV 1800
                  **998776555555555555555555555 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   4.4e-09   1.3e-05       1      35 [.      13      48 ..      13      51 .. 0.96
   2 ?   -2.7   0.0       1.6   4.8e+03       4      19 ..    1167    1183 ..    1166    1183 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 4.4e-09
                EESSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEE CS
       SH3_1  1 iAlYDYeaeesdELsfkkGDviivleksed.gWwkg 35
                +A Y+++ae++ +L+++ GD++ ++e++ d +W++g
  CCE26830.1 13 VATYPFTAESPADLPLEIGDELYIIEETPDgNWLRG 48
                699******************************998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.6
                  SSBEXSS.TTBXEBSTT CS
       SH3_1    4 YDYeaee.sdELsfkkG 19  
                  Y+++ +  +d L+f +G
  CCE26830.1 1167 YPFPTKAvTDNLTFDEG 1183
                  99999999******998 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.2e-06    0.0037       1      35 [.      14      49 ..      14      60 .. 0.90
   2 ?   -1.9   0.0       1.1   3.2e+03      41      49 .]      75      83 ..      74      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.2e-06
       SH3_9  1 AlypyepreddeLsLqrGDvitviee.sedgWlegs 35
                A yp+++ +++ L+L+ GD +++iee +++ Wl+g 
  CCE26830.1 14 ATYPFTAESPADLPLEIGDELYIIEEtPDGNWLRGY 49
                78**********************994578899996 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
       SH3_9 41 GlvPanyve 49
                G +P+++ve
  CCE26830.1 75 GIFPRSCVE 83
                99******7 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.1e-05      0.15       3      56 ..      13      84 ..      11      85 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.1e-05
                EESS-B-SCGCCB--B-TTEEEEEE..EEEECT.TEEEEEE.C............CCE.......EEEEGCGEEE CS
       SH3_2  3 raiedyvgedkseLsfkkGdvikvlslgskdsd.gwwegev.g............Grv.......GlfPsslvee 56
                +a+  +++e++  L ++ Gd ++++   ++ +d +w +g+               G+        G+fP+s+ve+
  CCE26830.1 13 VATYPFTAESPADLPLEIGDELYII---EETPDgNWLRGYLvAppsllagltsvkGQTlearvfsGIFPRSCVEV 84
                566668999****************...777777999999954778888887777555777779*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2092 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.22u 0.28s 00:00:01.50 Elapsed: 00:00:00.45
# Mc/sec: 14065.76
//
Query:       CCE26831.1  [L=279]
Description: uncharacterized protein CPUR_00300 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-06   27.7   0.0      0.088   12.8   0.0    2.4  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
    5.1e-06   26.7   0.0    6.8e-05   23.1   0.0    2.5  2  Acetyltransf_1   Acetyltransferase (GNAT) family
    6.1e-05   23.4   0.0    0.00024   21.4   0.0    2.0  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00082   20.0   0.1      0.017   15.8   0.1    2.6  1  Acetyltransf_5   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.16   12.0   0.0       0.65   10.1   0.0    2.0  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
       0.17   12.1   0.0       0.29   11.3   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.9e-05     0.088      53      80 ..     162     189 ..     150     196 .. 0.84
   2 !   12.6   0.0   3.4e-05       0.1      88     126 ..     220     260 ..     209     261 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.9e-05
  Acetyltransf_10  53 hisllfVdpeyrgqGigkaLleaveeea 80 
                      ++++l+V +eyrg G +k L++++++ +
       CCE26831.1 162 KLGRLAVVKEYRGHGFSKLLVQTALTWL 189
                      799*******************998765 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.4e-05
  Acetyltransf_10  88 eltvnaspyavpfYeklGFkavgeeq..eenGirfvpMeke 126
                       + v+a+++a+++ ek GF+  +e+    e+Gi++v M k+
       CCE26831.1 220 LVCVHAQKEAIGLWEKWGFVIDEEMGswREEGIHHVGMFKQ 260
                      478******************9777622689******9776 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.3e-08   6.8e-05      41      92 ..      74     192 ..      35     207 .. 0.71
   2 ?    0.5   0.0      0.24     7e+02     102     117 .]     223     238 ..     210     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.3e-08
                     T.......................TEEEEEEEEEEEET...TSTTEEEEE..........................................EEE CS
  Acetyltransf_1  41 d.......................geliGfisllkipd...ekggvayie..........................................sla 67 
                     d                       ++++G+i++ + p+   + ++ a+ +                                          +la
      CCE26831.1  74 DvsaeeevrdhagnvtqprksstqNKPVGTIRAVPFPHephP-KPGAEYWngqlvstgketahslstdstldrgldrattfhngkepyiklgRLA 167
                     23344445555666666666666699*****99999999752.2223333577777777777777888888888888888888888888888*** PP

                     ESGGGTTSSHHHHHHHHHHHHHHHT CS
  Acetyltransf_1  68 VspeyrgkGlGsaLlealeeraree 92 
                     V +eyrg+G  ++L+++++ ++ ++
      CCE26831.1 168 VVKEYRGHGFSKLLVQTALTWLQSN 192
                     **********************998 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.24
                     ETTEHHHHHHHHHTTE CS
  Acetyltransf_1 102 eedndaairlYeklGF 117
                        ++ ai+l+ek GF
      CCE26831.1 223 VHAQKEAIGLWEKWGF 238
                     345889*********9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.91   2.7e+03      11      23 ..      80     109 ..      62     132 .. 0.62
   2 !   21.4   0.0   8.2e-08   0.00024      26      75 ..     162     239 ..     134     240 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.91
                     T.................TEEEEEEEEEEE CS
  Acetyltransf_7  11 d.................gkivGfialsll 23 
                     +                 +k+vG+i++++ 
      CCE26831.1  80 EvrdhagnvtqprksstqNKPVGTIRAVPF 109
                     255555555555555566777788777665 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 8.2e-08
                     CTEEEEE-GGGTTSSHHHHHHHH........................TTSEEE.........EEEEEETHH.HHHHHHHHTTEE CS
  Acetyltransf_7  26 eitrlaVdpeyrgkGiGraLlea........................aekgii.........leqlelnae.kaikfYeklGFe 75 
                      ++rlaV +eyrg+G  + L++                              +         l+   ++a+ +ai+++ek GF+
      CCE26831.1 162 KLGRLAVVKEYRGHGFSKLLVQTaltwlqsnpaffdpssaevaqtggL----TkaklskwdgLV--CVHAQkEAIGLWEKWGFV 239
                     4556*****************954788888877777776554333330....133333333211..22222489*********8 PP

>> Acetyltransf_5  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   5.8e-06     0.017       1     100 [.      40     182 ..      40     183 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.8e-06
  Acetyltransf_5   1 LRyevFreemgaegeaaapeldiDefDavcdhllvi.....deae.....................evVGtyRllrpdeae.............. 55 
                     +R++vF+ee +   e+     ++D+ D+ + h +v+     +  +                     + VGt+R ++  ++               
      CCE26831.1  40 VREKVFVEEQHVPLEN-----ELDADDPRSCHWVVYatvdvS--AeeevrdhagnvtqprksstqnKPVGTIRAVPFPHEPhpkpgaeywngqlv 127
                     5999999999999999.....899999999999999666541..14567888899999999998766******9988877778999999888877 PP

  Acetyltransf_5  56 .....rlegfysesef....d.lsklaalrrrllElgRscvhpeyRnkralellw 100
                          +++++ ++s +    d  + +++ ++  + lgR++v +eyR+    +ll+
      CCE26831.1 128 stgkeTAHSLSTDSTLdrglDrATTFHNGKEPYIKLGRLAVVKEYRGHGFSKLLV 182
                     76654224444444443333224444445559***************99888876 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.3   3.8e+03      46      64 ..     118     137 ..      97     141 .. 0.71
   2 ?   10.1   0.0   0.00022      0.65      62     105 ..     149     192 ..     145     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.3
                     EEEE.TTEEEEEEEEEEEEE CS
  Acetyltransf_9  46 gaed.ngelvgqlallplel 64 
                     gae+ ng+lv++ + ++++l
      CCE26831.1 118 GAEYwNGQLVSTGKETAHSL 137
                     45555788888877776665 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00022
                     EEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHT CS
  Acetyltransf_9  62 lelnvpGktlkaagvtgVavapehrgrgvlskLlaraleemree 105
                     +  ++++ + ++  ++  av  e+rg+g+ + L+++al+ ++++
      CCE26831.1 149 RATTFHNGKEPYIKLGRLAVVKEYRGHGFSKLLVQTALTWLQSN 192
                     667888899999999**********************9977765 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.7e-05      0.29      21      56 ..     157     192 ..     143     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.7e-05
  Acetyltransf_CG  21 kegvldfthTeVpeelrGkGiAkkLvkaalddaree 56 
                      ke  +++    V +e+rG+G+ k Lv++al + +++
       CCE26831.1 157 KEPYIKLGRLAVVKEYRGHGFSKLLVQTALTWLQSN 192
                      5556777788899*****************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2243.96
//
Query:       CCE26832.1  [L=214]
Description: probable 40S ribosomal protein S5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.3e-38  129.4   1.9      1e-37  129.0   1.9    1.1  1  Ribosomal_S7  Ribosomal protein S7p/S5e


Domain annotation for each model (and alignments):
>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   1.9   5.9e-42     1e-37      13     149 .]      69     214 .]      60     214 .] 0.95

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 5.9e-42
                   ---SSTTSBHHHHHHHHHSB....TTBHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHCS-SEEEEEEBSSSSBEEEEEEE-HHHHHHHHHHHHH CS
  Ribosomal_S7  13 lpdpkynselveklinklmk....dGkkslAekivygaldiieektkkdplevleeAlenvkPrvevksrrvGGatyqvpvevrpkRrqalAlrwii 105
                   +   k+n++++e+l+n lm+    +Gkk +A +iv +a++ii+  t+++p++v ++A+ n+ Pr++ +++   G+  +++v+v+p Rr+++A+  ++
    CCE26832.1  69 KRFRKANCPIIERLTNSLMMhgrnNGKKLMAVRIVAHAFEIIHLMTDQNPIQVAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLT 165
                   4556799************99999************************************************************************* PP

                   HHH...STSSSS-HHHHHHHHHHHHHTT-..SHHHHHHHHHHHHHHHTG CS
  Ribosomal_S7 106 eaa...rkrkeksmaekLaeElidAaege..gaavkkreethrmAeanr 149
                   ++a   ++r+ ks+ae+LaeEli+Aa+g+  ++a+kk++e++r+A++nr
    CCE26832.1 166 TGAreaAFRNVKSIAECLAEELINAAKGSsnSYAIKKKDELERVAKSNR 214
                   **988899********************9899****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1548.93
//
Query:       CCE26833.1  [L=95]
Description: probable ribosomal protein S25.e.c7 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-37  127.5   5.4    2.1e-37  127.4   5.4    1.0  1  Ribosomal_S25  S25 ribosomal protein
  ------ inclusion threshold ------
      0.019   14.5   0.1      0.029   13.9   0.1    1.3  1  HTH_24         Winged helix-turn-helix DNA-binding
      0.064   13.2   0.0      0.078   12.9   0.0    1.2  1  MarR_2         MarR family
      0.082   12.7   0.0       0.12   12.2   0.0    1.4  1  FtsK_gamma     Ftsk gamma domain


Domain annotation for each model (and alignments):
>> Ribosomal_S25  S25 ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   5.4   4.6e-41   2.1e-37      14     101 .]       4      91 ..       1      91 [. 0.96

  Alignments for each domain:
  == domain 1  score: 127.4 bits;  conditional E-value: 4.6e-41
  Ribosomal_S25  14 kaggkakkKKwskgkvkdklnnavlfdketydkllkevpkyklitpsvvserlkingslArraLreleekgliklvskhraqviYtra 101
                    +ag+k++kKKwskgkvkdk+++avl+dk+t +kl+k+v++y+l++++v+++r+k+ngslAr+++++leekg+ik+v+ h++++iYtra
     CCE26833.1   4 AAGAKKQKKKWSKGKVKDKAQHAVLLDKTTSEKLYKDVQSYRLVSVAVLVDRMKVNGSLARQCIKDLEEKGIIKPVVTHSKMKIYTRA 91 
                    5788999*******************************************************************************95 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   6.4e-06     0.029      19      48 .]      48      77 ..      42      77 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.4e-06
      HTH_24 19 sqreLAerlglSpstvnrrlkrLeeeGlIk 48
                s + L +r  +  s  ++++k Lee+G+Ik
  CCE26833.1 48 SVAVLVDRMKVNGSLARQCIKDLEEKGIIK 77
                566778899999999**************8 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.7e-05     0.078      22      52 ..      47      77 ..      23      84 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.7e-05
                EEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2 22 ltvgelarrlglsksavsrilkrLvaaGLve 52
                ++v+ l++r+++  s + + +k+L+++G + 
  CCE26833.1 47 VSVAVLVDRMKVNGSLARQCIKDLEEKGIIK 77
                499*************************996 PP

>> FtsK_gamma  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.6e-05      0.12      15      57 ..      42      84 ..      30      90 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.6e-05
  FtsK_gamma 15 veegkaStSllQRrlriGYnRAarlidqLeeeGiVgpaegskp 57
                 + + +S+  l  r+++  + A + i +Lee+Gi+ p     +
  CCE26833.1 42 QSYRLVSVAVLVDRMKVNGSLARQCIKDLEEKGIIKPVVTHSK 84
                556778999999999**99*****************9876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 716.55
//
Query:       CCE26834.1  [L=313]
Description: probable ADP, ATP carrier protein (ADP/ATP translocase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-66  219.2   4.8    5.4e-24   83.9   0.2    3.0  3  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.045   13.5   1.3       0.18   11.6   1.3    2.0  1  DUF4748    Domain of unknown function (DUF4748)


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   6.7e-27     6e-23       4      94 ..      14     108 ..      11     111 .. 0.94
   2 !   83.9   0.2     6e-28   5.4e-24       3      94 ..     118     212 ..     116     215 .. 0.93
   3 !   55.9   0.2   3.5e-19   3.1e-15       4      94 ..     219     306 ..     217     309 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 6.7e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++++++l+Gg+++av++++++P+++vK  +q+q ++ k+ + ++    i d++k+++ +eG+++l+rG+++n++r++p++al+f++ +++k+++ 
  CCE26834.1  14 PFVADFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLERrylgISDCFKRTMADEGVMSLWRGNTANVIRYFPTQALNFAFRDKFKKMFG 108
                 7899********************************888777768899*********************************************96 PP

  == domain 2  score: 83.9 bits;  conditional E-value: 6e-28
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS...HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa...ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++++ +l++Gg+aga++ l+++ ld+++trl +++ks+k ++ ++   ++dv++k++ ++G++glyrG++p++ +++++++l+f++y+++k +ll
  CCE26834.1 118 KWMAGNLASGGAAGATSMLFVYSLDYARTRLANDAKSAKGTGERQfngLVDVYRKTLASDGIAGLYRGFMPSVAGIIVYRGLYFGMYDSIKPVLL 212
                 57899****************************999998877777888*******************************************9875 PP

  == domain 3  score: 55.9 bits;  conditional E-value: 3.5e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++l++++ G++  ++a+++++Pld+++ r+++ ++++ k k  + +d+ ++i+ ++G+++l+ G+++n+lr +  ++  +++y++l+ +l+
  CCE26834.1 219 NFLASFALGWCVTTGAGIAAYPLDTIRRRMMMTSGEAVKYK--NSFDAARQIIAKNGVKSLFNGAGANILRGVAGAG-VLSIYDQLQLILF 306
                 6899********************************98755..59****************************5555.5669999887765 PP

>> DUF4748  Domain of unknown function (DUF4748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.3     2e-05      0.18       3      20 ..     222     239 ..     221     241 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2e-05
     DUF4748   3 ksiwlgWgslcvaGigay 20 
                  s++lgW + + aGi+ay
  CCE26834.1 222 ASFALGWCVTTGAGIAAY 239
                 69***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2482.98
//
Query:       CCE26835.1  [L=137]
Description: uncharacterized protein CPUR_00304 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-24   85.9   0.3    1.7e-24   85.9   0.3    1.6  2  CENP-X         CENP-S associating Centromere protein X
  ------ inclusion threshold ------
      0.022   15.4   3.4      0.032   14.9   3.4    1.2  1  FXMRP1_C_core  Fragile X-related 1 protein core C terminal
      0.065   13.5   0.1       0.11   12.8   0.1    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> CENP-X  CENP-S associating Centromere protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.1   6.6e+03      47      61 ..      23      38 ..      16      41 .. 0.45
   2 !   85.9   0.3   2.8e-28   1.7e-24       1      75 []      71     137 .]      71     137 .] 0.94

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
                HHTT-SE......EEC CS
      CENP-X 47 eeegkeeseksk.lev 61
                e+e  + s++s+ le+
  CCE26835.1 23 ESETPSASDQSEvLEL 38
                3333333333335665 PP

  == domain 2  score: 85.9 bits;  conditional E-value: 2.8e-28
                 CHHHHHHHCCC-SSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SE.....EECHHHHHHCHCHHCHC CS
      CENP-X   1 kellarlLqesfkdektkItkdalelvaeylklFvrEavaRaaeeaeeegkeeseksklevedLekiapqLlLDf 75 
                 k+ll+r+L+e+f+++ t+I+ da+++v +y+++FvrEa+aRaa e++++         levedLek+apqLlLD+
  CCE26835.1  71 KDLLTRVLHEFFTKDATRISRDANAAVGKYMDIFVREAIARAAVEKNAGF--------LEVEDLEKVAPQLLLDL 137
                 689*****************************************666654........****************6 PP

>> FXMRP1_C_core  Fragile X-related 1 protein core C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   3.4   5.3e-06     0.032      60     114 ..       4      60 ..       2      72 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.3e-06
  FXMRP1_C_core  60 srsysgRGrGr.RGagatsg.kygtnseasnaseteseakdelsdwslageeeegek 114
                    sr+ ++RGrGr RG+++ ++ +  + s++s + e +++++d+ ++ + a++ ++ ++
     CCE26835.1   4 SRPAARRGRGRpRGSTKRQEsETPSASDQSEVLELSDDSPDQRRRDRDAPRASDNTE 60 
                    68999*********9998887677788888888999999988877777777666444 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.9e-05      0.11      16      46 ..      84     115 ..      67     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
                    TTXS-B-HHHHHHHHHHHHHHHHH.HHHHHHH CS
  CBFD_NFYB_HMF  16 pdarkiakdAkeliaecveefiee.laseAae 46 
                    +da +i++dA   + + +  f++e +a++A+e
     CCE26835.1  84 KDATRISRDANAAVGKYMDIFVREaIARAAVE 115
                    7999******************8736666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1101.55
//
Query:       CCE26836.1  [L=265]
Description: uncharacterized protein CPUR_00305 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-11   44.2   0.0    2.2e-11   43.7   0.0    1.3  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   1.2e-15   2.2e-11       1      61 [.     108     170 ..     108     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 1.2e-15
                 EHHHHTTTECTT...EEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHH CS
      Cyt-b5   1 tleelskhngkn...dlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekda 61 
                 t++el  h+g +   +l++ai+g++YDvs++   + G++++++ +aG+Da + f + ++ e++ 
  CCE26836.1 108 TEQELLVHDGRDpskPLLLAINGTIYDVSNGRRMY-GPGGSYHFFAGRDAARGFVTGCFAEDQT 170
                 6889999**666667********************.*******************998666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1988.54
//
Query:       CCE26837.1  [L=713]
Description: uncharacterized protein CPUR_00306 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1896  (0.10575); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 4815.47
//
Query:       CCE26838.1  [L=391]
Description: related to replication factor C chain Rfc3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-15   56.5   0.0    7.6e-15   55.5   0.0    1.6  1  AAA              ATPase family associated with various cellul
    4.3e-12   46.3   0.0    1.2e-11   44.9   0.0    1.8  1  Rep_fac_C        Replication factor C C-terminal domain
    6.3e-12   45.6   0.0    1.5e-10   41.1   0.0    2.2  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
    5.2e-09   36.3   0.0    1.1e-08   35.2   0.0    1.6  1  Rad17            Rad17 P-loop domain
    4.2e-07   30.2   0.1    1.3e-06   28.6   0.1    1.9  1  AAA_assoc_2      AAA C-terminal domain
    4.7e-06   26.6   0.2    7.3e-06   26.0   0.2    1.4  1  HrpB4            Bacterial type III secretion protein (HrpB4)
    5.2e-06   26.3   0.0    1.4e-05   24.9   0.0    1.7  1  AAA_30           AAA domain
    9.2e-06   26.1   0.0    5.1e-05   23.7   0.0    2.2  1  AAA_16           AAA ATPase domain
    2.6e-05   24.1   0.0    4.8e-05   23.2   0.0    1.3  1  DNA_pol3_delta   DNA polymerase III, delta subunit
    3.7e-05   23.7   0.0    0.00029   20.7   0.0    2.0  2  AAA_11           AAA domain
    4.1e-05   23.1   0.0    0.00014   21.3   0.0    2.0  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    4.2e-05   23.9   0.1    0.00036   20.8   0.1    2.2  1  AAA_22           AAA domain
    4.6e-05   23.2   0.0    0.00014   21.7   0.0    1.8  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      5e-05   23.3   0.1    0.00028   20.9   0.0    2.3  1  AAA_5            AAA domain (dynein-related subfamily)
    5.6e-05   23.0   0.0    9.8e-05   22.2   0.0    1.3  1  AAA_24           AAA domain
    0.00011   21.4   0.0    0.00019   20.7   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
      0.001   19.0   0.0      0.006   16.4   0.0    2.1  2  AAA_3            ATPase family associated with various cellul
     0.0013   18.7   0.0     0.0022   18.0   0.0    1.3  1  AAA_14           AAA domain
     0.0015   18.8   0.0     0.0062   16.9   0.0    1.9  1  AAA_19           AAA domain
     0.0023   17.4   0.0       0.79    9.1   0.0    2.4  2  PhoH             PhoH-like protein
  ------ inclusion threshold ------
      0.012   15.0   0.0      0.095   12.1   0.0    2.1  2  TniB             Bacterial TniB protein
      0.012   15.6   0.0      0.085   12.8   0.0    2.0  2  ResIII           Type III restriction enzyme, res subunit
      0.025   15.1   0.0      0.053   14.1   0.0    1.6  1  AAA_18           AAA domain
      0.025   14.8   0.0       0.06   13.6   0.0    1.7  1  AAA_28           AAA domain
      0.032   13.8   0.3       0.12   11.9   0.0    1.9  2  AAA_25           AAA domain
      0.046   13.8   0.0       0.11   12.7   0.0    1.6  1  TAFII28          hTAFII28-like protein conserved region
      0.059   13.8   0.0       0.13   12.7   0.0    1.6  1  RNA_helicase     RNA helicase
       0.06   12.9   0.0       0.11   12.0   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
       0.15   11.8   0.1        1.2    8.8   0.0    2.2  2  DEAD             DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   1.2e-17   7.6e-15       1     130 [.      79     212 ..      79     214 .. 0.76

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1.2e-17
                 EEEESSTTSSHHHHHHHHHHHH......THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS................TSEEEEEETGGGHHHHHTTC CS
         AAA   1 vllyGppGtGKTllakavakel......gvefleisgsellskyvgesekkirelfkeakeka................kpsilfiDEidalaksrsgs 77 
                 +llyGppGtGKT+++ a+a+ +       + +le+++s+ +   +    ++i+ + ++ +                   + + +++DE+da++++    
  CCE26838.1  79 LLLYGPPGTGKTSTVLALARRIygasnmRQMVLELNASDDR--GIDVVRDQIKTFASTKQI-FslgaggparpdapsvaSYKLIILDEADAMTNTA--- 171
                 69*******************64333224779*******99..444444444333333211.12334556677779995559**********9999... PP

                 CCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEEET CS
         AAA  78 eseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkiei 130
                         + +L + +++++    ++ +++++n+ +kl+pall +R++r  + 
  CCE26838.1 172 --------QMALRRIMEKYTA---NTRFCIIANYSHKLSPALL-SRCTRFRFS 212
                 ........*************...589****************.999987665 PP

>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.9e-14   1.2e-11       1      86 [.     300     385 ..     300     387 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.9e-14
                 --HHHHHHHHHHHHH.T-HHHHHHHHHHHHHHC---HHHHHHHHHHHGCCS..S-HHHHHHHHHHHHHHHHHHHCTH-HHHHHHHHH CS
   Rep_fac_C   1 phpteieeileacln.gdfeeaykklrellvekGysaediltqlhrvvkeqeelpeaqkleilellgeiekrlveGasehlqlsall 86 
                 p+p+ + +i++++l+ +d++ +  +++ l+v +G++++d++t l + +++  e+  ++ +  l+ l++ie+r++ G+se +q+ a++
  CCE26838.1 300 PPPDAMAQIVKTLLEtSDVASCLGTMNALKVTRGLALADMITALAEALVKL-EVAPEVMISWLSGLADIEHRVAGGGSEMVQTGAVV 385
                 89***********999**********************************6.799****************************9987 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   2.5e-13   1.5e-10       2     162 ..      60     214 ..      59     215 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 2.5e-13
  DNA_pol3_delta2   2 qeealkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqirelie.. 93 
                      ++++l  ++k +  +rl h +L++G+ g+gk ++ l+la+++   ++ ++          +++  +   + v++++ k    ++ qi +l +  
       CCE26838.1  60 HQDILATINKFVDANRLPH-LLLYGPPGTGKTSTVLALARRIYGASNMRQ-------MVLELNASDDRGIDVVRDQIK-TFASTKQIFSLGAgg 144
                      5677888899999999999.789*******************99988866.......233344444444444444443.466667777776511 PP

  DNA_pol3_delta2  94 .elsrkpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                            p  +++k+ii+++a+ mt+ A+ al +++E   +n+ f +i++ ++kl + + SRc  ++fspl
       CCE26838.1 145 pARPDAPSVASYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPL 214
                      145567888***********************************************************98 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.8e-11   1.1e-08       6      76 ..      42     109 ..      37     194 .. 0.69

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.8e-11
       Rad17   6 nelWfekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLsk.elgik.lrew 76 
                   +W+eky+P ++e+++ h+  +  ++++++a+ L++     LL+ GP+G gk+ +v  L++ ++g + +r+ 
  CCE26838.1  42 SLPWIEKYRPATLEDVSGHQDILATINKFVDANRLPH-----LLLYGPPGTGKTSTVLALARrIYGASnMRQM 109
                 568********************************97.....599*********9999998724444313333 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   2.2e-09   1.3e-06       3      53 ..     230     282 ..     228     300 .. 0.66

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2.2e-09
                  X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX CS
  AAA_assoc_2   3 kklkleddalealaeladGDaRkaLnlLElaaeaaeak..egkieitledlee 53 
                  ++++++ +a++al++l++GD+R+aLn+L+++ +++     ++  ++++e l++
   CCE26838.1 230 EAVQIAGEAVDALVKLSKGDMRRALNVLQACHASSTPLrtRDAPKLSEEGLRA 282
                  6799*************************887776654454444444444442 PP

>> HrpB4  Bacterial type III secretion protein (HrpB4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.2   1.2e-08   7.3e-06      81     171 ..     200     291 ..     164     336 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.2e-08
       HrpB4  81 reqllrvLrarALlfRraelRrlidresrsrlaewvGvavdsivqdpaaagaadvaalel.keglapLaardaaalaleGwrllvregawpd 171
                 ++ l r  r r   +++a +R+l+d+ + +   +  G+avd++v+ ++++  +++  l++ + ++ pL+ rda +l++eG r + r+    +
  CCE26838.1 200 PALLSRCTRFRFSPLKEADIRVLVDKVVEEEAVQIAGEAVDALVKLSKGDMRRALNVLQAcHASSTPLRTRDAPKLSEEGLRAIKRDTITTE 291
                 555556666666667899****************************************86266799******************99876554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.3e-08   1.4e-05      22     118 ..      80     185 ..      65     190 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.3e-08
      AAA_30  22 vltGpAGtGKt.talkalreaweaag...grviglAptgkaAkvLaeelgieastiakllkrlk.....grarlepgtllivDEagmvdtkqlaallka 111
                 +l Gp+GtGKt t+l+ +r+++ a++   + + + A+  +  +v+++++ + ast + +    +     ++ ++++ +l+i DEa  + ++   al ++
  CCE26838.1  80 LLYGPPGTGKTsTVLALARRIYGASNmrqMVLELNASDDRGIDVVRDQIKTFASTKQIFSLGAGgparpDAPSVASYKLIILDEADAMTNTAQMALRRI 178
                 688*******9345566699999996442333478999**********999888888777445599**966778888********76655555567777 PP

      AAA_30 112 aekagak 118
                 +ek+ a 
  CCE26838.1 179 MEKYTAN 185
                 7776665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   8.2e-08   5.1e-05      16      61 ..      68     116 ..      59     204 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 8.2e-08
      AAA_16  16 lervrsgrpelvllsGesGvGKsslvrellralekd...ggiflrgkcd 61 
                  + v ++r + +ll+G++G+GK+s v +l+r++ ++   +  +l+ ++ 
  CCE26838.1  68 NKFVDANRLPHLLLYGPPGTGKTSTVLALARRIYGAsnmRQMVLELNAS 116
                 446778889*******************999988776553333444443 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   7.8e-08   4.8e-05      56     170 ..     154     258 ..     151     259 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 7.8e-08
                     SSEEEEEEE--.....TT-S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHH CS
  DNA_pol3_delta  56 sdkrivvlknpklltkesklnekllkeLeeylsnlpedtlLiliapkklderkklvklLkkkatvveaktlkeeelkkwiqkraqelglkiekea 150
                     ++ ++++l+ +      +  +   + +L ++++++ ++t +++ia+       kl   L ++ t +++++lke++++  ++k+++e+ ++i  ea
      CCE26838.1 154 ASYKLIILDEA------DAMTNTAQMALRRIMEKYTANTRFCIIAN----YSHKLSPALLSRCTRFRFSPLKEADIRVLVDKVVEEEAVQIAGEA 238
                     56788888888......4467777889*******************....456777888888999****************************** PP

                     HHHHHHHHTT-HHHHHHHHH CS
  DNA_pol3_delta 151 lelLlelvennlsaikqele 170
                     ++ L++l+ ++++++ + l+
      CCE26838.1 239 VDALVKLSKGDMRRALNVLQ 258
                     ************99988775 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.8e-07   0.00029      19      43 ..      78     105 ..      61     140 .. 0.71
   2 ?    0.4   0.0      0.75   4.6e+02     191     223 ..     159     191 ..     151     193 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.8e-07
      AAA_11  19 itliqGPPGtgKTktivellsqll...s 43 
                   l+ GPPGtgKT+t+++l ++++   +
  CCE26838.1  78 HLLLYGPPGTGKTSTVLALARRIYgasN 105
                 4799******************953331 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.75
      AAA_11 191 evldeaeivltTlsgagsklleklakkfdvviI 223
                  +ldea+    T + a ++ +ek++++ + +iI
  CCE26838.1 159 IILDEADAMTNTAQMALRRIMEKYTANTRFCII 191
                 58999999999*************999999998 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.3e-07   0.00014      17     133 ..      71     182 ..      53     199 .. 0.69
   2 ?   -1.8   0.0       2.8   1.7e+03     178     192 ..     191     205 ..     180     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.3e-07
  Mg_chelatase  17 iaaaGgHnlllvGppGsGKtmlakrlps.llpplseeea.levakiasvagkkeeekllkrrpfraphhsaskaalvGggskpkpGeislahnGvLf 111
                   + a    +lll+GppG+GKt    +l+  +  + +++++ le ++        +++++   r   +   s+ ++  +G+g  ++p + s a   +++
    CCE26838.1  71 VDANRLPHLLLYGPPGTGKTSTVLALARrIYGASNMRQMvLELNAS-------DDRGIDVVRDQIKTFASTKQIFSLGAGGPARPDAPSVASYKLII 160
                   45555569***********977666654144444433331333332.......23334444444555556666666899****************** PP

  Mg_chelatase 112 LDElpefkrkvlevLRePledg 133
                   LDE+  +++++  +LR+ +e+ 
    CCE26838.1 161 LDEADAMTNTAQMALRRIMEKY 182
                   *****************99985 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.8
  Mg_chelatase 178 ierYlsklsgplldR 192
                   i++Y +kls +ll R
    CCE26838.1 191 IANYSHKLSPALLSR 205
                   789*********999 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   5.8e-07   0.00036       7     118 ..      78     181 ..      74     197 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.8e-07
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseell.ealeqalraravielliiDEaqhlr 104
                 +l+++G++GtGKT ++  l+++    + a ++r  v++ +++ + + + ++ ++  +   ++     s+ +   ++    + a ++  l+i+DEa+ + 
  CCE26838.1  78 HLLLYGPPGTGKTSTVLALARRI---YGASNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIF---SLGAGGpARPDAPSVASYK--LIILDEADAM- 167
                 799*******************8...55666889999999999999999999999999988888...7777776666666666666..**********. PP

      AAA_22 105 seealeeLrsllnl 118
                 +++a   Lr++++ 
  CCE26838.1 168 TNTAQMALRRIMEK 181
                 88888888888774 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.2e-07   0.00014       2      57 ..      50     100 ..      49     111 .. 0.89
   2 ?   -2.8   0.0       7.8   4.8e+03      85     112 ..     156     183 ..     152     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.2e-07
      RuvB_N   2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakel 57 
                 rP +le+  g +++ ++++ f++a +     l h+llyGpPG Gkt+    +a+ +
  CCE26838.1  50 RPATLEDVSGHQDILATINKFVDANR-----LPHLLLYGPPGTGKTSTVLALARRI 100
                 9*********************9965.....89*************9888888765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.8
      RuvB_N  85 kdvlfideihrlsraveevlysamedfr 112
                  +++ +de   ++++++  l   me ++
  CCE26838.1 156 YKLIILDEADAMTNTAQMALRRIMEKYT 183
                 5678899999999999999999999886 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.5e-07   0.00028       1      90 [.      78     180 ..      78     188 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.5e-07
                 EEEEE--SSSSHHHHHHHGGGGB......S--EEEEE--TT--HHHHH--B--.........--------............G-SEEEEESGGG--HHH CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal......nreveyvqltrdtteedlkgrreikngttslvdsplvraar............egeilvlDEveraesev 81 
                 ++lL GppGtgK++ +  la+++      ++ v++ + ++d   + ++ ++++     + +++++                 + ++++lDE + +   +
  CCE26838.1  78 HLLLYGPPGTGKTSTVLALARRIygasnmRQMVLELNASDDRGIDVVRDQIKT----FASTKQIFSLG-AggparpdapsvaSYKLIILDEADAMTNTA 171
                 79*********************654433333333333333333333333332....22222222222.135555777777788888888888888888 PP

                 HHHHHHHHH CS
       AAA_5  82 lnsLlslle 90 
                 +++L +++e
  CCE26838.1 172 QMALRRIME 180
                 888877776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.6e-07   9.8e-05       5      87 ..      79     177 ..      77     189 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.6e-07
      AAA_24   5 iliyGpsgiGKTtlakel........gpkplfidtekGlksldadkfpdieswedfldevvel........aaeladyktlviDtideleelclaevir 87 
                 +l+yGp+g+GKT++++ l          +  ++ ++++ ++  +   ++i++++  ++ +           a   a yk +++D +d + + +   ++r
  CCE26838.1  79 LLLYGPPGTGKTSTVLALarriygasNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSLGaggparpdAPSVASYKLIILDEADAMTNTAQMALRR 177
                 79****************888888887777778888876654444446677777777776666*******99999************998877666655 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.1e-07   0.00019      22     104 ..      49     130 ..      31     139 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.1e-07
      DUF815  22 vdevklddLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkallneyaeeg...Lrlievekedlkelpklvellre 104
                 +++ +l+d+ g    ++++++ +++f++ ++  ++LL+G  GtGK s+v al +++  ++     ++e++ +d + ++ + +++++
  CCE26838.1  49 YRPATLEDVSG----HQDILATINKFVDANRLPHLLLYGPPGTGKTSTVLALARRIYGASnmrQMVLELNASDDRGIDVVRDQIKT 130
                 44444444444....456778899****************************9998766554333667777777777777777665 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   9.7e-06     0.006       1      57 [.      78     134 ..      78     143 .. 0.93
   2 ?   -0.9   0.0       2.2   1.4e+03      64      89 ..     157     182 ..     147     201 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 9.7e-06
       AAA_3   1 hvllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefk 57 
                 h+ll g PG++kt +v ala+ +    +  q+  +l  sd  G++v++++ k+f  +
  CCE26838.1  78 HLLLYGPPGTGKTSTVLALARRIYGASNMRQMVLELNASDDRGIDVVRDQIKTFAST 134
                 99*********************9999999******************999999765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.2
       AAA_3  64 nllladeinrappktqsalleameer 89 
                 +l++ de +  +  +q al  +me  
  CCE26838.1 157 KLIILDEADAMTNTAQMALRRIMEKY 182
                 68889999999999999999999865 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.6e-06    0.0022       5     107 ..      79     200 ..      76     219 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.6e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikell...vkkesilyinldderdkkladpekllelilek.lke..............ekktylflDEiqevpe.wekalk 84 
                 l++ G+  +GKT  +  l+++ +     ++ +l++n  d+r  +     ++ ++   k + +                 ++++lDE+  +++ ++ al+
  CCE26838.1  79 LLLYGPPGTGKTSTVLALARRIYgasNMRQMVLELNASDDRGIDVVRD-QIKTFASTKqIFSlgaggparpdapsvASYKLIILDEADAMTNtAQMALR 176
                 6899***************99999655556666666666555332211.22222222222224556789999**9988899******9875538899** PP

      AAA_14  85 slvdeg.knldvivtGSnskllsk 107
                 ++++++  n ++++    s  ls 
  CCE26838.1 177 RIMEKYtANTRFCIIANYSHKLSP 200
                 ****98888899887666655554 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     1e-05    0.0062      10     126 ..      76     179 ..      68     193 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1e-05
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal.....ldfddlltealelleeaeeekklqee 103
                  ++ll+ ++pGtGKT ++ +  + +  + ++    + l a   r  + +r+++ +  a+++ i +l+                        +   + + 
  CCE26838.1  76 LPHLLLYGPPGTGKTSTVLALARRIYGASNMRQMVLELNASDDRGIDVVRDQI-KTFASTKQIFSLGAggparP-----------------DAPSVASY 156
                 56899**************9999999888886666667888899999999998.22333333333322222220.................23334333 PP

      AAA_19 104 ellivDEfqdvdelqyrLlkall 126
                 +l+i DE+  ++ +++  l++++
  CCE26838.1 157 KLIILDEADAMTNTAQMALRRIM 179
                 36666666666644444444443 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0013      0.79      23      56 ..      80     113 ..      61     124 .. 0.86
   2 ?    5.7   0.0     0.014       8.7     121     145 ..     157     180 ..     154     200 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0013
                 EEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE CS
        PhoH  23 faiGpaGtGKtylavalavealkkkkvkriiltr 56 
                    Gp GtGKt   +ala +++ ++++++++l  
  CCE26838.1  80 LLYGPPGTGKTSTVLALARRIYGASNMRQMVLEL 113
                 578**********************999999865 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.014
                 EEEEE-SGGG--HHHHHHHHTTB-T CS
        PhoH 121 afvilDEAQnttkeqmkmfltRlGe 145
                 +++ilDEA  +t+ + +m l R+ e
  CCE26838.1 157 KLIILDEADAMTN-TAQMALRRIME 180
                 68******98886.56888888754 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015     0.095      22      56 ..      63      97 ..      46     138 .. 0.84
   2 ?    0.1   0.0      0.71   4.4e+02     120     142 ..     156     178 ..     152     183 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
        TniB 22 rLeeLleypkrkrmpnlllvGdsnnGKtmivekFa 56
                 L+ + ++ +++r p+lll+G++ +GKt+ v   a
  CCE26838.1 63 ILATINKFVDANRLPHLLLYGPPGTGKTSTVLALA 97
                56777788899*****************9886655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.71
        TniB 120 vrvLiiDEihnllagsarkqref 142
                  +++i+DE + + +  + + r++
  CCE26838.1 156 YKLIILDEADAMTNTAQMALRRI 178
                 799*******9998877666665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00014     0.085      12      54 ..      63     106 ..      57     136 .. 0.83
   2 ?    0.2   0.0         1   6.5e+02     132     162 ..     155     187 ..     121     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00014
                 HHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S.... CS
      ResIII  12 ienlleklks.krdkrglikmaTGtGKTlvaaklierllkkgke 54 
                 i ++++k+ + +r  ++l+  + GtGKT + ++l++r++ + + 
  CCE26838.1  63 ILATINKFVDaNRLPHLLLYGPPGTGKTSTVLALARRIYGASNM 106
                 566777776547777*********************99987665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1
                 T-SEEEEETGGGTTS.T..TTHHHHHT---SEE CS
      ResIII 132 rfdviiiDEaHrlgakk..swreilekfkeavl 162
                 ++++ii DEa  ++  +  + r+i+ek+ ++++
  CCE26838.1 155 SYKLIILDEADAMTNTAqmALRRIMEKYTANTR 187
                 567999999988888635588888888777665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   8.6e-05     0.053       2      38 ..      80     116 ..      79     141 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.6e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.gvnlrdvakengll 38 
                 ll G+pG+GKt+   +L++r  +   n r+++ e + +
  CCE26838.1  80 LLYGPPGTGKTSTVLALARRI-YgASNMRQMVLELNAS 116
                 689****************95.4666666666665544 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.7e-05      0.06       3      23 ..      80     102 ..      78     136 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.7e-05
      AAA_28   3 vitGgestGKTtlleaLaar..g 23 
                  + G+++tGKT+++ aLa+r  g
  CCE26838.1  80 LLYGPPGTGKTSTVLALARRiyG 102
                 589***************98553 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0002      0.12      37      58 ..      80     101 ..      68     121 .. 0.88
   2 ?   -3.3   0.0       9.2   5.7e+03      18      54 ..     301     337 ..     294     355 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
      AAA_25  37 llaGapgtGKttlaldlalava 58 
                 ll+G+pgtGKt  +l la  + 
  CCE26838.1  80 LLYGPPGTGKTSTVLALARRIY 101
                 8*****************9876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.2
      AAA_25  18 pppprrwlvkgllpagelallaGapgtGKttlaldla 54 
                 pp    ++vk ll   ++a   G   + K t  l la
  CCE26838.1 301 PPDAMAQIVKTLLETSDVASCLGTMNALKVTRGLALA 337
                 4555566777777777777777776666666655555 PP

>> TAFII28  hTAFII28-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00017      0.11      10      78 ..     202     270 ..     195     277 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00017
     TAFII28  10 qlnRYevfrrsklnkaavkklvnsvlsqsvsqnvaivvaglaKvFvgeiveeArevqeeweesg.plqpe 78 
                  l+R   fr s l++a+++ lv +v++++  q    +v +l K+  g++  +A++v ++ + s+ pl+ +
  CCE26838.1 202 LLSRCTRFRFSPLKEADIRVLVDKVVEEEAVQIAGEAVDALVKLSKGDM-RRALNVLQACHASStPLRTR 270
                 5678899*****************************************8.88999998888777799876 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0    0.0002      0.13       2      28 ..      80     106 ..      79     128 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0002
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklkl 28 
                   +lyGp+g+GK++++  La+++ +++++
    CCE26838.1  80 LLYGPPGTGKTSTVLALARRIYGASNM 106
                   79******************9977743 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00018      0.11      35      71 ..      78     115 ..      63     129 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
       AAA_7  35 pvllvGptGtGKtviikdllkkld.kekylsltinfsa 71 
                 ++ll+Gp GtGKt+++  l +++   +++  ++++++a
  CCE26838.1  78 HLLLYGPPGTGKTSTVLALARRIYgASNMRQMVLELNA 115
                 799*************9977766536666666666665 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.92   5.7e+02      17      36 ..      79      97 ..      65     112 .. 0.74
   2 ?    8.8   0.0     0.002       1.2     119     149 ..     153     182 ..      99     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.92
                EEEEESTTSSHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
        DEAD 17 vlvaaeTGsGKTlaflipvl 36
                +l+ ++ G+GKT   l  + 
  CCE26838.1 79 LLLYGPPGTGKTSTVLA-LA 97
                6788999*****98544.43 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.002
                 CTTEEEEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 119 lsqvrflVlDEadrlldqgfsdfinrilnql 149
                 + + ++++lDEad + +   +  ++ri+++ 
  CCE26838.1 153 VASYKLIILDEADAMTNT-AQMALRRIMEKY 182
                 567899**********98.889999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 2646.13
//
Query:       CCE26839.1  [L=565]
Description: related to sphingoid base-phosphate phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-17   63.0   2.6    8.9e-17   61.1   2.6    2.0  1  PAP2      PAP2 superfamily
     0.0014   18.4   4.4     0.0023   17.7   3.3    1.9  1  PAP2_3    PAP2 superfamily
  ------ inclusion threshold ------
        3.8    5.6   4.4        5.4    5.1   4.4    1.1  1  SSP160    Special lobe-specific silk protein SSP160


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   2.6   1.5e-20   8.9e-17       5     131 ..     106     227 ..     103     231 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 1.5e-20
        PAP2   5 lllalalaalltsvlKdlvgrpRPfflaeetkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkig...lvllalillllavlval 100
                 l+ +lal ++ t+++Kd+++ pRP     + ++ +   +le        ++fPS+Hsa+a+++a++  + l++  ++     + +l  +++++a+ + +
  CCE26839.1 106 LVHMLALGVFWTGFIKDFYSLPRPLSPPLNRITMSGSAALE--------YGFPSTHSANALSVAVYGLFSLHSPTNTLPltvRMILEPLCYFYAASIVF 196
                 66789999999*****************9999999866654........7************************99999999999999*********** PP

        PAP2 101 sRlylgvHflsDvlaGlliGialaalayrlv 131
                 +Rly+g+H + Dvl+G ++G+ ++++ +++ 
  CCE26839.1 197 GRLYCGMHGFLDVLVGSAVGAGIGVIEFYYG 227
                 ************************9998875 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   3.3   3.8e-07    0.0023     122     187 ..     140     219 ..     103     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.8e-07
      PAP2_3 122 nglaa....fPSlHvawallvala.lwrlrrkr.........llrvlalllnvlmivatvatgnHYlvDviaGvalalva 187
                 +g aa    fPS H a al va++ l++l++ +         +l +l+ ++++ +++  ++ g H ++Dv++G a+++++
  CCE26839.1 140 SGSAAleygFPSTHSANALSVAVYgLFSLHSPTntlpltvrmILEPLCYFYAASIVFGRLYCGMHGFLDVLVGSAVGAGI 219
                 555666777**********998653444443334677777778999*****************************99875 PP

>> SSP160  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   4.4   0.00091       5.4     673     709 ..      10      46 ..       4      58 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.00091
      SSP160 673 vpdeattttssttttttttttaaptttttkaanapft 709
                  p++ t++ s+ttttt+t tta  ++   ka +a + 
  CCE26839.1  10 PPNALTSAISTTTTTTSTNTTAEYAAKHEKAVDAGLR 46 
                 5788888889999999999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4141.19
//
Query:       CCE26840.1  [L=387]
Description: probable 3-oxoacyl-[acyl-carrier-protein]-reductase (oar-1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-37  127.6   1.7    5.5e-37  127.6   1.7    1.6  2  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    5.7e-34  117.3   0.2    1.1e-33  116.3   0.2    1.5  1  adh_short      short chain dehydrogenase
    3.6e-08   33.5   1.5    5.7e-08   32.9   1.5    1.2  1  KR             KR domain
    5.8e-06   25.9   0.0    1.4e-05   24.7   0.0    1.8  2  Epimerase      NAD dependent epimerase/dehydratase family
     0.0092   15.9   0.0      0.017   15.0   0.0    1.4  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
  ------ inclusion threshold ------
      0.026   13.9   0.1      0.098   12.0   0.0    2.0  2  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
      0.052   13.1   0.1      0.082   12.5   0.1    1.4  1  NmrA           NmrA-like family
      0.078   12.4   0.0       0.13   11.6   0.0    1.3  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.6   1.7   2.4e-40   5.5e-37       2     217 ..      17     243 ..      16     262 .. 0.86
   2 ?   -2.5   0.0       1.3     3e+03      79     103 ..     288     312 ..     283     315 .. 0.81

  Alignments for each domain:
  == domain 1  score: 127.6 bits;  conditional E-value: 2.4e-40
                   TTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTT....SEE........EE--TTSHHHHHHHH.....HHHHHHHSSEEEEEE----- CS
  adh_short_C2   2 aasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelg....aev........lecDVtdeeqvealv.....eevvekfgklDilvnnagia 80 
                   a   IG +iA+a+a +Ga v l  ++  + ++++e+  +++                +++DV+d+ ++++++     e+   ++g +Dilvn+agia
    CCE26840.1  17 ATGIIGSHIARAFAFHGAVVTLLGRSAVQaRAKLEPQMQAYRrdsaD-TegpsahrfIRLDVADRPSIKDVFgpratEDGSPSVGAMDILVNCAGIA 112
                   55569*****************9988877666666666655432221.133334566************999321113333456************* PP

                   EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCT CS
  adh_short_C2  81 pklkgpfletsreefdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTl 177
                   ++  + +  ts++ ++ +l++nl +++l +k+a+  ++++g i+n+ss+ a ++  + +ay+a+Ka+++a+tr+l+ e++++ +RvNa  pg+++  
    CCE26840.1 113 QT--TLLKRTSDDALASILETNLLATMLACKHAR--VRQNGCIINVSSLMAVKAGLGVTAYAASKAGVVAFTRALCLEMAARSVRVNALLPGWVESA 205
                   **..99999***********************95..7999********************************************************* PP

                   GGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSG CS
  adh_short_C2 178 aasgikgfdelleelearaplgrlgtpeevaeaalfLasd 217
                   +++++k  +el+e     +p +r++ p eva+aa+fLa +
    CCE26840.1 206 MWNNLK--PELKETYLGGIPSNRVAHPAEVADAAVFLATN 243
                   *****9..*****************************986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
                   --EGCSS-GGGH-HHHHHHHHHHHT CS
  adh_short_C2  79 iapklkgpfletsreefdraldvnl 103
                   +a+++k+++l+ sr++f+ ++++n+
    CCE26840.1 288 FAKAVKTRLLSSSRQDFQFMVNMNI 312
                   5556779999999999999999886 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.2     5e-37   1.1e-33       1     192 [.      10     212 ..      10     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 5e-37
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHH.HHHHHHHT....TSE......EEEEE-TTTSHHHHHHHHHHHHHHH.....SSESEEEE CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseeklee.vakelkee....gak......alaiqvDvtdreevealvekavkkl.....gkldvLvn 83 
                 k+++v Ga++ IG  ia+++a  Ga v++++rs+ ++++ +  ++++     + +        +i++Dv+dr ++++++   + +      g +d+Lvn
  CCE26840.1  10 KHAVVLGATGIIGSHIARAFAFHGAVVTLLGRSAVQARAkLEPQMQAYrrdsA-DtegpsaHRFIRLDVADRPSIKDVFGPRATEDgspsvGAMDILVN 107
                 79***************************999987664403334444353331.1334444679************998643332223444******** PP

                 ---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB CS
   adh_short  84 NAGitgsgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlv 182
                 +AGi++++  +++s+++  +++e+Nl +++l+++++      +++G I+nvsS  + ++  gv+aY+AsKa+v+++tr+l  e+a +++rvna+ PG v
  CCE26840.1 108 CAGIAQTTLLKRTSDDALASILETNLLATMLACKHARV----RQNGCIINVSSLMAVKAGLGVTAYAASKAGVVAFTRALCLEMAARSVRVNALLPGWV 202
                 *********************************99543....69******************************************************* PP

                 SSHHHHHHCT CS
   adh_short 183 dTdmakelre 192
                 +++m ++l++
  CCE26840.1 203 ESAMWNNLKP 212
                 ****999876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   1.5   2.5e-11   5.7e-08       4     161 ..      13     181 ..      11     197 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.5e-11
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS.......--HHHHHHHHHHHHTT-......EEEE----TT-HHHHHHHHHHHHHHS.....S---EEE CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsa.....aadedskaliaelealga......evevvaaDvsdkdavealleeikaee.....ppikGvi 86 
                 ++ G++G +G ++ar  a +ga  + ll+Rsa     + ++    ++++ ++  a        +++++Dv+d+ +++ ++    +e+     +++   +
  CCE26840.1  13 VVLGATGIIGSHIARAFAFHGAV-VTLLGRSAvqaraKLEP----QMQAYRRDSAdtegpsAHRFIRLDVADRPSIKDVFGPRATEDgspsvGAMDILV 106
                 799******************95.899****7644443333....333333333333344466799*************98766665562233445579 PP

                 E---------TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHH CS
          KR  87 haAgvlrdklleemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalae 161
                 ++Ag+++++ll+++++++l+++l+  + ++    +  + ++   ++ +SS+ ++    g ++Yaa  a + a+ +
  CCE26840.1 107 NCAGIAQTTLLKRTSDDALASILETNLLATMLACKHARVRQNGCIINVSSLMAVKAGLGVTAYAASKAGVVAFTR 181
                 ********************************9999999**************************9876666655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   6.4e-09   1.4e-05       2      61 ..      13      88 ..      12     156 .. 0.89
   2 ?   -2.3   0.0       1.1   2.5e+03     199     228 ..     215     243 ..     167     252 .. 0.62

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 6.4e-09
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC................EEEE--TT-HHHHHHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl................elveldltdrsalerlfk 61
                +V+GatG iGs++++a++ +g  v+ l r   + + +++++                 ++++ld+ dr +++++f 
  CCE26840.1 13 VVLGATGIIGSHIARAFAFHGAVVTLLGRSAVQARAKLEPQMqayrrdsadtegpsahRFIRLDVADRPSIKDVFG 88
                79*******************99999999988888888888899*************************9999885 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
                 SEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 199 evtllgdgtalRdflyveDvaeaillvleh 228
                 + t+lg g +     +  +va+a ++++++
  CCE26840.1 215 KETYLG-GIPSNRVAHPAEVADAAVFLATN 243
                 444444.44444456667777777777766 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.5e-06     0.017       3      41 ..      13      52 ..      11      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.5e-06
                EEE--.SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHH CS
     3HCDH_N  3 aviGa.GtmGagiaavfasagleVvlvdiseealekalek 41
                 v+Ga G++G+ ia +fa +g  V+l+ +s+ ++++ le 
  CCE26840.1 13 VVLGAtGIIGSHIARAFAFHGAVVTLLGRSAVQARAKLEP 52
                699*99**********************988777665554 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.4e-05     0.098      34      72 ..       7      45 ..       2      53 .. 0.88
   2 ?   -2.1   0.0      0.94   2.1e+03      70      91 ..      92     113 ..      89     122 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.4e-05
                   -TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCC CS
  THF_DHG_CYH_C 34 legkkvvvvGrsnivgkplallLleknatVtvchsktkd 72
                   l+gk++vv+G+  i+g+ +a  ++ ++a+Vt++ +++ +
     CCE26840.1  7 LAGKHAVVLGATGIIGSHIARAFAFHGAVVTLLGRSAVQ 45
                   78*****************************98776655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.94
                    SCCHHHHHCCSSEEEE-SS-TT CS
  THF_DHG_CYH_C  70 tkdlaeitreadivvvavGkpe 91 
                    t+d +  +   di+v ++G ++
     CCE26840.1  92 TEDGSPSVGAMDILVNCAGIAQ 113
                    6677777788899999999876 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.6e-05     0.082       2      36 ..      13      47 ..      12      87 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.6e-05
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHH CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdtksel 36
                +v+GaTG +G++++ra++ +g  v  l R   + +
  CCE26840.1 13 VVLGATGIIGSHIARAFAFHGAVVTLLGRSAVQAR 47
                69**********************99999884444 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.9e-05      0.13       2      71 ..      14      87 ..      13      92 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.9e-05
                   EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHH....HCTTT...TTGC..CEEEEE--TT-HHHHHHHH CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgrie....hlakdpkeelee..nlklhkgDltDssslerll 71
                   + G +G iGs++a+ +   g  v+ + r + + + +++e    + ++d ++++e+    ++++ D+ D+ s+++++
     CCE26840.1 14 VLGATGIIGSHIARAFAFHGAVVTLLGRSAVQ-ARAKLEpqmqAYRRD-SADTEGpsAHRFIRLDVADRPSIKDVF 87
                   78*****************9988777665444.444444222133333.33333334899**********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3223.30
//
Query:       CCE26841.1  [L=447]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-12   46.7   0.0    8.7e-06   25.3   0.0    3.0  2  Pkinase      Protein kinase domain
    0.00086   18.7   0.0        1.6    7.9   0.0    2.9  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   9.7e-10   8.7e-06       1     123 [.      58     180 ..      58     190 .. 0.78
   2 !   17.3   0.0   2.7e-07    0.0024     136     264 .]     252     417 ..     241     417 .. 0.55

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 9.7e-10
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS........CTTB--EEEEEEE....SSEEEEEEE--TTEBHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk........hpnivrlyevfee....kdelylvleyveggelad 87 
                 y+++ klG G+f++V  a++  +++ vAvK+   +++   +     rE++il +++         +++++l+++f        + +lv+e+v+   + d
  CCE26841.1  58 YRVMLKLGFGAFATVWLARDLVDKRYVAVKVGHGSDNPLPD-----RECEILSQIRqtgpgkhgYERVIELLDAFVVegpnGFHQCLVTEVVSP--ISD 149
                 567789************************99888776544.....466666555544444444589******998766656678899999983..333 PP

                 HHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS CS
     Pkinase  88 llerkgslseeeakkiakqilegleylHskgiiHrD 123
                          e+   +i++qi+eg+++lH +gi+H D
  CCE26841.1 150 PD-----TREHCSYDILQQIVEGFAFLHGEGIVHGD 180
                 33.....4677778********************98 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.7e-07
                 EEEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHH........TTSCBSHHHHHHHHHHHHH..HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHC CS
     Pkinase 136 elKitDFGlakelesssk....ltsfvgtseYlAPEvl........keneyskkvDvWslGvily..elltgkppfsgekgkekvekeldqlekilkil 220
                  +Ki DFG a +++++ +    +  ++     ++PE +         ++  s+++D+W+lG++ +    +  k  fs + ++ +  ++  + + +++i 
  CCE26841.1 252 TVKILDFGRAHRIDKDPDllgaVPMMI-----RPPEFIlhelcdnrIGSTWSEAADIWALGCTSLfrPGVLMKIFFSRQFNTVDLPQKRGRKFGSREIG 345
                 49*************997554444444.....55555554444653346679**********7431122333334442222222222222211111111 PP

                 T..........SHH...HHHTTS............................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 221 g..........etkeklpeasei............................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 +                     +                               + +llk+++  +p +R +++ ll +p++
  CCE26841.1 346 NmtivgilcylL----------FelrsrdtdylapalydrdkvwgvprneeVLRLVNLLKRMVITKPDERTSMTVLLTDPFM 417
                 111111222331..........022333333456666777777888775444445567777888888888888877777775 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00018       1.6       6     128 ..      63     180 ..      58     186 .. 0.69
   2 !    6.9   0.0   0.00036       3.2     141     194 ..     252     309 ..     246     312 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00018
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-B..TTB--EEEEEESSSS....EEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkh..pnivkllgvctkeep....llivteyvkgGdLlkfLrkk 95 
                  klG Gaf++V+ ++       ++  VavK+   +++   +++ e+l++++     kh  +++++ll + + e+p     ++vte v+       +   
   CCE26841.1  63 KLGFGAFATVWLARDL----VDKRYVAVKVGhgSDNPLPDRECEILSQIRQTGPGKHgyERVIELLDAFVVEGPngfhQCLVTEVVSP------IS-- 148
                  7899999999988877....66777888887223344445566777777766655443378888888888666544446666666643......33.. PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrd 128
                   ++ ++ +  +++ +q+ +G ++L+ + +vH d
   CCE26841.1 149 -DPDTREHCSYDILQQIVEGFAFLHGEGIVHGD 180
                  .34666677788999****************98 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00036
                  EEEE-STTTHEETTTSSEE.EETTSSTSGGGGS-HHHHHHSE...EEHHHHHHHHHHH CS
  Pkinase_Tyr 141 vvkisDfGLardiekddey.vkkeeaklpvkWmapEslkekk...ftsksDvWsfGvl 194
                  +vki DfG a++i kd +   +      p +++  E  +++     ++++D+W+ G +
   CCE26841.1 252 TVKILDFGRAHRIDKDPDLlGAVPMMIRPPEFILHELCDNRIgstWSEAADIWALGCT 309
                  79***********77777623334444566666666666655888999******9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3621.36
//
Query:       CCE26842.1  [L=405]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-11   43.8   0.0    3.3e-05   23.4   0.0    2.2  2  Pkinase      Protein kinase domain
  ------ inclusion threshold ------
      0.061   12.6   0.0        1.2    8.3   0.0    2.5  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   3.7e-09   3.3e-05       2     129 ..      59     186 ..      58     190 .. 0.79
   2 !   18.3   0.0   1.3e-07    0.0012     137     264 .]     252     390 ..     238     390 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.7e-09
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS........CTTB--EEEEEEE....SSEEEEEEE--TTEBHHHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk........hpnivrlyevfee....kdelylvleyveggeladl 88 
                 + + klG G+f++V  a++  +++ vA+K+   +++   +     rE++il +++         +++++l++vf        + +lv+e+v+  + +d+
  CCE26842.1  59 RIMLKLGFGAFATVWLARDLVDKRYVALKVGHGSDNPLPD-----RECEILSQIRetgpgkhgYERVIELLDVFIVegpnGFHQCLVTEVVSPLSDEDA 152
                 66779************************99888776544.....566666666554444444589*******98766656788899999996666666 PP

                 HHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGE CS
     Pkinase  89 lerkgslseeeakkiakqilegleylHskgiiHrDlKpeNi 129
                 ++r          ++++q++eg+++lH + i+H D  ++N+
  CCE26842.1 153 VQR-------WSFDVVRQLVEGFAFLHGEDIVHGDPHSANL 186
                 653.......445799*******************888885 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.3e-07
                 EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH........TTSCBSHHHHHHHHHH..HHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH. CS
     Pkinase 137 lKitDFGlakelessskltsfvgtseYlAPEvl........keneyskkvDvWslGv..ilyelltgkppfsgekgkekvekeldqlekilkilgetke 225
                  Ki DFG a ++++ ++     + s  ++PE l         ++  s+++D+W++G   i+++  +++  +++++g++  ++++ +++ ++  l + ++
  CCE26842.1 252 AKILDFGRAYRMSQVTPNLLGAAPSMIRPPEFLleelcddrIGSTWSEAADIWAVGYtkIFFSGQFNSVDLPQKRGRKFGSRKIGNMTIVAPALYDRDK 350
                 7*************99855555556666666666555565334677**********8334555556666677677777666666665555555545555 PP

                 ..HHHTTS.-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 226 klpeasei.seeakdllkkllkkdpkkRltaeellqhpyl 264
                  +  +++    ++++llk+++  +p +R  ++ ll +p++
  CCE26842.1 351 VWGVQRNEeALKFIHLLKRMIITKPDERTPMTVLLTDPFM 390
                 5554433337789999****************99999986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00014       1.2       6     133 ..      63     185 ..      58     191 .. 0.68
   2 ?    1.1   0.0     0.022   1.9e+02     141     194 ..     251     309 ..     242     330 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00014
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-B..TTB--EEEEEESSSS....EEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkh..pnivkllgvctkeep....llivteyvkgGdLlkfLrkk 95 
                  klG Gaf++V+ ++       ++  Va+K+   +++   +++ e+l++++     kh  +++++ll v + e+p     ++vte v+       L ++
   CCE26842.1  63 KLGFGAFATVWLARDL----VDKRYVALKVGhgSDNPLPDRECEILSQIRETGPGKHgyERVIELLDVFIVEGPngfhQCLVTEVVS------PLSDE 150
                  7888888888888776....6677788887722233334445666666665554443337888888888866654444666666654......45554 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGG CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarN 133
                         ++ ++++ q+ +G ++L+ +++vH d  + N
   CCE26842.1 151 ---DAVQRWSFDVVRQLVEGFAFLHGEDIVHGDPHSAN 185
                  ...666788999*******************9966666 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.022
                  EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE........EEHHHHHHHHHHH CS
  Pkinase_Tyr 141 vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk........ftsksDvWsfGvl 194
                  ++ki DfG a ++   ++ + +  +  p    +pE l e+          ++++D+W+ G +
   CCE26842.1 251 TAKILDFGRAYRM---SQVTPNLLGAAPSMIRPPEFLLEELcddrigstWSEAADIWAVGYT 309
                  6799999988777...4444455555555555555555444444458889999****98854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2939.52
//
Query:       CCE26843.1  [L=137]
Description: uncharacterized protein CPUR_00312 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1004.31
//
Query:       CCE26844.1  [L=472]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-16   59.1   0.0    6.4e-07   29.0   0.0    2.3  2  Pkinase      Protein kinase domain
    1.6e-05   24.3   0.0       0.13   11.5   0.0    2.6  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.6e-10   1.4e-06       2     129 ..      59     186 ..      58     193 .. 0.78
   2 !   29.0   0.0   7.1e-11   6.4e-07     137     264 .]     252     403 ..     239     403 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.6e-10
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS........CTTB--EEEEEEE....SSEEEEEEE--TTEBHHHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk........hpnivrlyevfee....kdelylvleyveggeladl 88 
                 + + klG G+f++V  a++  +++ vAvK+   ++++  +     rE++il +++         +++++l++vf        + +lv+e+v+   l d 
  CCE26844.1  59 RIMLKLGFGAFATVWLARDLVDKRYVAVKVGHGSDNSLPD-----RECEILSQIRktgpgkhgYERVIQLLDVFVVegpnGFHQCLVTEVVS--PLSDE 150
                 66779************************99988777655.....466666666554444444589*******9886665668889999999..44444 PP

                 HHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGE CS
     Pkinase  89 lerkgslseeeakkiakqilegleylHskgiiHrDlKpeNi 129
                  +     ++    ++++qi+eg+++lH +gi+H D  ++N+
  CCE26844.1 151 DT-----NDYCSFDVVRQIVEGFAFLHGEGIVHGDPHSANL 186
                 43.....344445899*******************888886 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 7.1e-11
                 EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH........TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT...... CS
     Pkinase 137 lKitDFGlakelessskltsfvgtseYlAPEvl........keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg...... 221
                  Ki DFG a +++++ +     + +  ++PE +         ++  s+++D+W++G++ly + +g ++ s   ++e++  e+ q+       g      
  CCE26844.1 252 AKILDFGRAHRIDKDPN-LLGAVPKMIRPPEFIlhelcddrIGSTWSEAADIWAVGCTLYYVKSGLELVSTWGSSEDFLFEAIQFG------Gpppgtw 343
                 7*************996.4444555566666665555576334677************************8888888888888832......2222222 PP

                 ...SHH...HHHTTS..................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 222 ...etkeklpeasei..................seeakdllkkllkkdpkkRltaeellqhpyl 264
                      + + +                        +++++llk+++  +p +R  ++ ll +p++
  CCE26844.1 344 pkvWITHDRQ----HdnslydrdkvwgvsrseeASKFRNLLKRMIITKPDERTPMTVLLTDPFM 403
                 3331222333....13344778888*****99999999******************99999986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   1.5e-05      0.13       5     133 ..      62     185 ..      58     190 .. 0.75
   2 !    9.9   0.0   4.6e-05      0.41     139     199 ..     249     313 ..     228     334 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.5e-05
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-B..TTB--EEEEEESSSS....EEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkh..pnivkllgvctkeep....llivteyvkgGdLlkfLrk 94 
                   klG Gaf++V+ ++       ++  VavK+   ++++  +++ e+l++++     kh  +++++ll v + e+p     ++vte v+       L +
   CCE26844.1  62 LKLGFGAFATVWLARDL----VDKRYVAVKVGhgSDNSLPDRECEILSQIRKTGPGKHgyERVIQLLDVFVVEGPngfhQCLVTEVVS------PLSD 149
                  689**********9988....67888999988334555556677888888777665554489*******9977774555777777664......5766 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGG CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarN 133
                  +    ++    ++++ q+ +G ++L+ + +vH d  + N
   CCE26844.1 150 E---DTNDYCSFDVVRQIVEGFAFLHGEGIVHGDPHSAN 185
                  6...445555678899****************9966655 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 4.6e-05
                  TTEEEE-STTTHEETTTSSEE.EETTSSTSGGGGS-HHHHHHSE...EEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 139 nkvvkisDfGLardiekddey.vkkeeaklpvkWmapEslkekk...ftsksDvWsfGvllwEif 199
                  + ++ki DfG a++i kd +   +  +   p +++  E  +++     ++++D+W+ G +l+ + 
   CCE26844.1 249 SVTAKILDFGRAHRIDKDPNLlGAVPKMIRPPEFILHELCDDRIgstWSEAADIWAVGCTLYYVK 313
                  6689***********99999845556667899999999999988888999***********9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 3102.70
//
Query:       CCE26845.1  [L=621]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-15   55.6   0.0    2.8e-06   26.9   0.0    2.3  2  Pkinase       Protein kinase domain
    2.1e-13   50.4   0.6      5e-10   39.3   0.2    2.2  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    3.6e-11   42.9   0.1    5.4e-11   42.3   0.1    1.2  1  adh_short     short chain dehydrogenase
    0.00083   18.7   0.0        0.2   10.9   0.0    3.0  3  Pkinase_Tyr   Protein tyrosine kinase
  ------ inclusion threshold ------
        6.2    7.1   5.6        4.1    7.7   1.3    2.7  2  DUF2537       Protein of unknown function (DUF2537)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.1e-09   3.8e-06       2     129 ..      59     186 ..      58     193 .. 0.78
   2 !   26.9   0.0   7.7e-10   2.8e-06     137     264 .]     252     404 ..     239     404 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.1e-09
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS..CTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk..hpnivrlyevfee....kdelylvleyveggeladllerkg 93 
                 + + klG+G+f++V  a++  +++ vAvK+   +++   ++  ++l+ i+     k   +++++l+++f        + +lv+e+v+  + +d+ +   
  CCE26845.1  59 RIMLKLGSGAFATVWLARDLVDKRYVAVKVGHGSDNPLPDReGEILSQIRETGPGKhgYERVIELLDAFVVegpnGFHQCLVTEVVSPLSDEDAAR--- 154
                 66779************************99888776544435666666666555534689******99876666668889999999554444443... PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGE CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKpeNi 129
                     +   ++++qi+eg+++lH +gi+H D  ++N+
  CCE26845.1 155 ----HCSFDVVRQIVEGFAFLHGEGIVHGDPHSANL 186
                 ....3334799*******************888886 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 7.7e-10
                 EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH........TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH... CS
     Pkinase 137 lKitDFGlakelessskltsfvgtseYlAPEvl........keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkekl 227
                  Ki DFG a ++++ ++     + +  ++PE l        +++  s+++D+W++G++ly + +g+++ s   + ek+        + +++ g+  e++
  CCE26845.1 252 AKILDFGRAYRMSQMTPNLLGAAPRMIRPPEDLlhelchgsTGSTWSEAADIWAVGCTLYYVQSGSELVSTWGSLEKIIF------RAIQLGGPPPETW 344
                 7*************99888888899999***998999987555666************************3333332222......2344444322222 PP

                 HHHTTS..........................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 228 peasei..........................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 p+   +                            ++ +++++++  +p +R  ++ ll +p++
  CCE26845.1 345 PK---VwitqdrqhdnslydrdkvwgvpcneeRLKFHKFIQRMIITKPDERTPMTVLLTDPFM 404
                 22...2233456667777999999*****98888999******************99999986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.2   1.4e-13     5e-10     111     182 ..     470     542 ..     449     552 .. 0.87
   2 !    9.1   0.0   0.00024      0.86     196     234 .]     583     619 ..     570     619 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1.4e-13
                   HHHHHHCTSCCEEEEE.EEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGS CS
  adh_short_C2 111 kaalplmkeggsivnl.ssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgi 182
                    a+ +++k++g i+n  s + a ++  + +a +a+Ka+++a++r+l+ e++++ +RvNa  pg+++  ++++ 
    CCE26845.1 470 TAMSNVLKQTGCIINNvSNLIAVKADLGVTACTASKAGVVAFSRALCLEMAARSVRVNALLPGWVESAMWNRR 542
                   566779999999997527789999999***************************************9997765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00024
                   STTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 196 aplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                    p +r+++  eva+aa+fLa +e  y +  +l  DgGl+
    CCE26845.1 583 MPSNRVARLAEVADAAVFLATNE--YANNCVLNLDGGLS 619
                   6899****************988..99999999999985 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.1   1.5e-14   5.4e-11     113     193 ..     465     545 ..     450     547 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 1.5e-14
                 HHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short 113 flltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                 ++ t +++ + lkq +  I nvs  ++ ++  gv+a +AsKa+v++++r+l  e+a +++rvna+ PG v+++m +++r++
  CCE26845.1 465 LNHTGTAMSNVLKQTGCIINNVSNLIAVKADLGVTACTASKAGVVAFSRALCLEMAARSVRVNALLPGWVESAMWNRRRKQ 545
                 566777888877777666668999999************************************************998876 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       2.2   7.9e+03     184     198 ..       8      22 ..       6      30 .. 0.82
   2 !   10.9   0.0   5.7e-05       0.2       5     133 ..      62     185 ..      58     190 .. 0.75
   3 !    4.2   0.0    0.0064        23     139     202 ..     249     316 ..     228     340 .. 0.79

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2.2
                  HHHHHHHHHHHHHHH CS
  Pkinase_Tyr 184 sksDvWsfGvllwEi 198
                  ++sD + +Gv  +E 
   CCE26845.1   8 QESDDFLYGVYEYEC 22 
                  68999*****99996 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.7e-05
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-B..TTB--EEEEEESSSS....EEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkh..pnivkllgvctkeep....llivteyvkgGdLlkfLrk 94 
                   klG+Gaf++V+ ++       ++  VavK+   +++   +++ e+l++++     kh  +++++ll + + e+p     ++vte v+       L +
   CCE26845.1  62 LKLGSGAFATVWLARDL----VDKRYVAVKVGhgSDNPLPDREGEILSQIRETGPGKHgyERVIELLDAFVVEGPngfhQCLVTEVVS------PLSD 149
                  689**********9988....77888999988323444556677888888877665543389*****999966664555777777765......4665 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGG CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarN 133
                  +       +  ++++ q+ +G ++L+ + +vH d  + N
   CCE26845.1 150 E---DAARHCSFDVVRQIVEGFAFLHGEGIVHGDPHSAN 185
                  5...55666789999*****************9966655 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0064
                  TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE........EEHHHHHHHHHHHHHHHHTTS CS
  Pkinase_Tyr 139 nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk........ftsksDvWsfGvllwEiftlg 202
                  + ++ki DfG a ++   ++++ +  +  p    +pE l ++          ++++D+W+ G +l+ + + g
   CCE26845.1 249 SITAKILDFGRAYRM---SQMTPNLLGAAPRMIRPPEDLLHELchgstgstWSEAADIWAVGCTLYYVQS-G 316
                  557899999977777...77777888888888888888887777778888899************98776.4 PP

>> DUF2537  Protein of unknown function (DUF2537)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.37   1.3e+03      45      65 ..      66      86 ..      59      91 .. 0.82
   2 ?    7.7   1.3    0.0011       4.1      11      61 ..     500     548 ..     491     549 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.37
     DUF2537 45 aGlaPtvwllrrvpvlRWvvl 65
                +G+  tvwl+r+    R+v++
  CCE26845.1 66 SGAFATVWLARDLVDKRYVAV 86
                68899******9988888875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0011
     DUF2537  11 vfvavvvavavvalslalaevhpllavvvnvvvvaGlaPtvwllrrvpvlR 61 
                 +++a  + + vva+s+al     + +v vn++  + +  ++w+ rr +++R
  CCE26845.1 500 ACTA--SKAGVVAFSRALCLEMAARSVRVNALLPGWVESAMWNRRRKQMWR 548
                 4433..456799*******99999**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4255.70
//
Query:       CCE26846.1  [L=712]
Description: related to ubiquitin-activating enzyme homolog UBA2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-74  249.7   0.0      4e-74  249.0   0.0    1.2  1  ThiF             ThiF family
      7e-24   84.2   0.1    1.6e-23   83.1   0.1    1.6  1  UAE_UbL          Ubiquitin/SUMO-activating enzyme ubiquitin-l
    0.00044   20.3   0.5    0.00044   20.3   0.5    2.9  3  UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
     0.0017   18.7   0.1     0.0046   17.4   0.1    1.7  1  NAD_binding_7    Putative NAD(P)-binding
     0.0081   16.4   1.1      0.042   14.1   1.1    2.1  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.022   14.8   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
       0.16   12.6   0.1       0.57   10.8   0.1    2.0  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.0   0.0   1.6e-77     4e-74       8     219 ..     103     507 ..      88     531 .. 0.96

  Alignments for each domain:
  == domain 1  score: 249.0 bits;  conditional E-value: 1.6e-77
                 HHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCGCCS-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   8 lgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritdetvleel 106
                 lg+    ++++++vl+vGaGg+G+ellknL+l+G+g++++vD D+i+lsNlnRqflfr+e+i+k+Ka va+ea++++np+v+++a++++i+d++++ ++
  CCE26846.1 103 LGPSLNSAVKQARVLMVGAGGIGCELLKNLVLTGFGEVHIVDLDTIDLSNLNRQFLFRQEHIKKSKALVAKEAASKFNPHVKIVAHHANIKDDEFTVSW 201
                 77888899************************************************************************************99999** PP

                 HTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH......................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................... RF
        ThiF 107 lesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct......................... 180
                 ++++ +V++alDn++arr+vn++c   +++lie+gt gf+gqv+vi +g+t+cy+C++     ++t+k++p+ct                         
  CCE26846.1 202 FKQFSIVFNALDNLDARRHVNKMCLAADVSLIESGTTGFNGQVQVIKKGTTACYDCTP-----KETPKSFPVCTirstpsqpihcivwgksyllnevfg 295
                 **********************************************99*********5.....899********************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  CCE26846.1 296 vsedesafdhshdadnaseiedlrresaalkkirdavgtdefprmlfdkvyhsdierlrsvedlwksrrrpdplqyeslsaqateamaskdkilnddqr 394
                 *************************************************************************************************** PP

                 .........................................................................HHHCT.E-B-HHHHHHHHHHHHHHHH CS
                 .........................................................................xxxxx.xxxxxxxxxxxxxxxxxxxx RF
        ThiF 181 .........................................................................siagn.ipaiatttavvaglaalell 205
                                                                                          ++agn ipaiatt+a+vagl++le+ 
  CCE26846.1 395 iwtleenfvvfkdsldrlsrrmmelkriknpeqpdpaitfdkddidtldfvassanirstmfgidrksrfdikEMAGNiIPAIATTNAIVAGLCVLEAF 493
                 *************************************************************************************************** PP

                 HHHTTBCGGGCCEE CS
                 xxxxxxxxxxxxxx RF
        ThiF 206 kllsgkeklensll 219
                 k+l+g+  + ++++
  CCE26846.1 494 KVLKGEYGQVKEVF 507
                 ***88876666655 PP

>> UAE_UbL  Ubiquitin/SUMO-activating enzyme ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.1   6.2e-27   1.6e-23       1      87 [.     539     621 ..     539     623 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 6.2e-27
     UAE_UbL   1 vkvdlskatlgdLvekvlkkeLgleepevsvnggatilYlsseedeeeddnldkkLaelgikngsiLtvdDfsqe.fkvnlvlkhdee 87 
                 v+vdls+atl+d ve+++k+ Lg+++ e+++++  +ilY     d +e++nl+kkL++lgik+gs+Ltv D+++e + vn+v++++e+
  CCE26846.1 539 VTVDLSRATLNDVVEDIVKEYLGFGDREFVLSNAVGILY-----DYDETENLPKKLSSLGIKGGSFLTVVDEDDEePFVNVVINIEES 621
                 79*************************************.....999**************************************997 PP

>> UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.097   2.5e+02       1      23 [.     275     298 ..     275     380 .. 0.59
   2 !   20.3   0.5   1.7e-07   0.00044     187     252 .]     401     467 ..     341     467 .. 0.60
   3 ?   -2.3   0.9       1.3   3.3e+03     170     200 ..     646     674 ..     594     701 .. 0.43

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.097
  UBA_e1_thiolCys   1 PneieHtieWArdk.FeglFekkp 23 
                      P++  H+i W +++  +++F  + 
       CCE26846.1 275 PSQPIHCIVWGKSYlLNEVFGVSE 298
                      788899999999851445553332 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 1.7e-07
  UBA_e1_thiolCys 187 d....eeeleelaeeleklakkesslalklkpieFeKDddtnfhidfitaasNlRArnYkIkeadrlkvK 252
                      +    +++l++l + + +l++ ++       +i F+KDd +   +df+++ +N+R+++++I+  +r+++K
       CCE26846.1 401 NfvvfKDSLDRLSRRMMELKRIKNPE-QPDPAITFDKDDID--TLDFVASSANIRSTMFGIDRKSRFDIK 467
                      11222333444444444433222222.345789******88..79*******************999887 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.3
  UBA_e1_thiolCys 170 kiavsdeeakeeeeeeedeeeleelaeelek 200
                      ++a+s++e+++ +  +++ ++  + + +l+ 
       CCE26846.1 646 RTAASNDETDDVQ--QSEPTQPRHNKGSLKR 674
                      1111111111111..1112222222333333 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.8e-06    0.0046       4      86 ..     110     229 ..     107     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.8e-06
  NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleag.akvtvvapevkeele...................................elvklaeeele.kdlega 62 
                     +k+ +vl vG+G ++ + +++l+ +g  +v++v+ ++ + ++                                      +++++e+  ++++++
     CCE26846.1 110 AVKQARVLMVGAGGIGCELLKNLVLTGfGEVHIVDLDTIDLSNlnrqflfrqehikkskalvakeaaskfnphvkivaHHANIKDDEFTvSWFKQF 205
                    57899**********************889*******6333336666666666666666666666666666665444333334566675588**** PP

  NAD_binding_7  63 dlviaatddrelneriaeaakarr 86 
                     +v+ a d+ + ++++ +++ a+ 
     CCE26846.1 206 SIVFNALDNLDARRHVNKMCLAAD 229
                    *******************97665 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   1.1   1.6e-05     0.042       1      98 [.     116     234 ..     116     264 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.......................TTTCEEEEE--TTTHHHHHHHHHTTSS CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka.......................lgvrfeaialdaenyeavLaallkegd 71 
                      vl++GaG++G  +++ l+ ++    e++++d +   l +l  +                         +v++ a+  +++++e  +++  k+  
       CCE26846.1 116 VLMVGAGGIGCELLKNLVLTGFG--EVHIVDLDTIDLSNLNRQFlfrqehikkskalvakeaaskfnPHVKIVAHHANIKDDEF-TVSWFKQFS 206
                      89*****************9965..9***********99999999*********************99***************9.********* PP

                      EEEE-SSGG.GHHHHHHHHHHHT-EEEE CS
  Sacchrp_dh_NADP  72 lvvnlsppi.ssldvlkaCietgvhyvd 98 
                      +v n++ +    + v k+C+++ v+ + 
       CCE26846.1 207 IVFNALDNLdARRHVNKMCLAADVSLIE 234
                      *********77779*********99987 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   8.4e-06     0.022       8      54 ..     109     155 ..     102     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.4e-06
                   S..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHH CS
  Shikimate_DH   8 eslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelae 54 
                   + +k+++vl++GaG ++ +++k+L+  g+ +v ++  +    ++l +
    CCE26846.1 109 SAVKQARVLMVGAGGIGCELLKNLVLTGFGEVHIVDLDTIDLSNLNR 155
                   46899*****************************9766555555555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00022      0.57       1      30 [.     115     145 ..     115     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00022
                 EEEEECSSHHHHHHHHHHHHTT.SEEEEEES CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelg.kkVtvver 30 
                 +v+ vG+G ig+El ++l   g  +V++v+ 
  CCE26846.1 115 RVLMVGAGGIGCELLKNLVLTGfGEVHIVDL 145
                 6999***********9995555449999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4938.12
//
Query:       CCE26847.1  [L=426]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-11   44.7   0.0    0.00012   21.5   0.0    2.4  2  Pkinase      Protein kinase domain
    5.1e-05   22.7   0.0       0.12   11.7   0.0    2.5  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.4e-08   0.00021       2     129 ..      60     187 ..      59     204 .. 0.78
   2 !   21.5   0.0   1.4e-08   0.00012     134     264 .]     250     416 ..     240     416 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.4e-08
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCH.CHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkeka.kkkkekkvlrEikilkklk..hpnivrlyevfee....kdelylvleyveggeladllerkg 93 
                 + + klG G+ ++V  a++  +++ vAvK+   +++   ++e ++l+ i+     k   +++++l++vf        + +lv+e+v    l d      
  CCE26847.1  60 RIMLKLGFGALATVWLARDLIEKRYVAVKVGLGSDNpLPNREAEILSQIRETGPGKhgYERVIQLLDVFVVegpnGFHQCLVTEVVL--PLSDPKA--- 153
                 66779************************96655540455556666666666555544589*******9886665667789999998..4444443... PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGE CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKpeNi 129
                    ++   ++++qi+eg+++lH + i+H D   +Ni
  CCE26847.1 154 --RQHCSYDVVRQIVEGFAFLHGEDIVHGDPHIANI 187
                 ..34555699********************988888 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.4e-08
                 TTEEEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHH...TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH. CS
     Pkinase 134 kgelKitDFGlakelesssk....ltsfvgtseYlAPEvl...keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetke 225
                 +  +Ki+ FG a +++++ +    + +++  +e++  E+     +   s+++D+W++G++ly + +g ++ s    k+++ +  d l++ ++  g+  e
  CCE26847.1 250 SVTVKIMGFGRAYRINKDPNllgaVLKMIRPPEFVLHELCddrIDFTWSEAADIWAVGCTLYDVKSGGELIS----KSTMGSPKDYLFQAIQFGGPPPE 344
                 4569*************99755544444555555555555642224459**********************9....44445566666667777775555 PP

                 ..HHHTTS.................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 226 klpeasei.................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++p+  +                                     +++l+k+l+  +p +R  ++ ll +p++
  CCE26847.1 345 TWPKVWDTqdrqqanslcdrdqvwevreadpnsskiahdeeRLAFLNLVKRLIITKPDERTPMAVLLTDPFM 416
                 555444445777888899999999999999999999999877889999999999999999999999998886 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00012       1.1      97     134 ..     150     187 ..      59     194 .. 0.59
   2 !   11.7   0.0   1.3e-05      0.12     134     204 ..     245     319 ..     229     349 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00012
                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGE CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNv 134
                  ++k + +  ++++ q+ +G ++L+ +++vH d    N+
   CCE26847.1 150 DPKARQHCSYDVVRQIVEGFAFLHGEDIVHGDPHIANI 187
                  5567777788999******************9777776 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 1.3e-05
                  EEEEETTEEEE-STTTHEETTTSSEE.EETTSSTSGGGGS-HHHHHHSE...EEHHHHHHHHHHHHHHHHTTSSG CS
  Pkinase_Tyr 134 vLlsenkvvkisDfGLardiekddey.vkkeeaklpvkWmapEslkekk...ftsksDvWsfGvllwEiftlges 204
                  vL  ++ +vki  fG a +i+kd +   +  +   p +++  E  +++     ++++D+W+ G +l+ + + ge 
   CCE26847.1 245 VLPGDSVTVKIMGFGRAYRINKDPNLlGAVLKMIRPPEFVLHELCDDRIdftWSEAADIWAVGCTLYDVKSGGEL 319
                  66667889************99999955666777899*********99888899***************998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3067.11
//
Query:       CCE26848.1  [L=366]
Description: uncharacterized protein CPUR_00317 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.6e-128  426.4   0.1   6.9e-128  426.1   0.1    1.1  1  Q_salvage  Potential Queuosine, Q, salvage protein family
    0.00089   18.7   0.1     0.0069   15.7   0.2    1.9  2  Pec_lyase  Pectic acid lyase


Domain annotation for each model (and alignments):
>> Q_salvage  Potential Queuosine, Q, salvage protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.1   0.1  7.6e-132  6.9e-128       1     282 []      79     366 .]      79     366 .] 0.98

  Alignments for each domain:
  == domain 1  score: 426.1 bits;  conditional E-value: 7.6e-132
   Q_salvage   1 lhpkkakestvdfifvvdlLNFsFWsekeeeerfaveykgkkytgYwsLvaalkraleegipitdpeflskete...eelkkvfrsateeeiplleeRl 96 
                 lhpk+++estv+fif++dlLNFsFWse ++eerf+++++gk++tgYwsLvaa++ralee+ipitdp+++++e+e   e+l+++frsat+ee+plleeRl
  CCE26848.1  79 LHPKAKDESTVAFIFTMDLLNFSFWSELPAEERFCIDFRGKQWTGYWSLVAAMQRALEEDIPITDPHYWQNEEEctmESLRHIFRSATDEEMPLLEERL 177
                 79**999******************************************************************9999********************** PP

   Q_salvage  97 ellreagkvllekfdgsfvnlikkanksaakLvnlvveefpsFrDeavyegkk..vrlyKRAqilvaDlwaafegeglgefedidkltmfADyrvpqvL 193
                 ++lre+gkvl e++++s++n++++an+saa+Lvnl++++f++FrDe+++eg++  vr++KRAqilvaDlwa+feg+++g+f+didk+t+fADyr+pq+L
  CCE26848.1 178 ACLRESGKVLQERYNSSITNVVDTANGSAAELVNLLARDFSCFRDEHIFEGRQkpVRFLKRAQILVADLWACFEGQSYGRFRDIDKITIFADYRIPQIL 276
                 **************************************************76666******************************************** PP

   Q_salvage 194 rqlgvLeyseeLekklkekellesgseeeveiRacsiwavelireeiekkkeeakekvnailiDffLwdlakelekee...iphhrtrsiyY 282
                  +lg+L  s+++++ +k+k+ll+sg+++ev++Racsiw+velir+ei +++++++  vnailiDffL+d++kele+++    phhrtrsi+Y
  CCE26848.1 277 ITLGALYCSPPVAAVIKDKKLLQSGDRWEVQLRACSIWCVELIRREIVRRHPDTE--VNAILIDFFLYDRMKELEAAGqepFPHHRTRSIWY 366
                 *****************************************************98..******************994468*********** PP

>> Pec_lyase  Pectic acid lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   7.7e-07    0.0069      99     191 ..       4      96 ..       2     101 .. 0.86
   2 ?    0.4   0.0     0.036   3.2e+02      37      77 ..     202     242 ..     180     301 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.7e-07
   Pec_lyase  99 Ddamvrvlnllekiaekkapyelld.ksqrkrlkkavekGidciLktqvkqngkltvWcaqhdevtlkpakaRayElpslsgaEsvgivlfLme 191
                 D+a  + l+ll++ +e+++p+++   +   + ++  +++G+d+ +++q  ++   t+++ q + ++++ a+  ++El  ++ +Es+    f m+
  CCE26848.1   4 DEADRELLELLRQHMEGQSPVQQDPdTGVLESAEYVYNQGVDVAIDMQATKQAAETIFS-QMQLKKYSTATWSQHELHPKAKDESTVAFIFTMD 96 
                 7888899**************966515567888999*********************97.67778899999999***********988888876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.036
   Pec_lyase  37 DndatvtellflaevykatkdekykdavrkglefllkaqYs 77 
                  n++  + +++la+ +   +de+  ++ +k + fl +aq  
  CCE26848.1 202 ANGSAAELVNLLARDFSCFRDEHIFEGRQKPVRFLKRAQIL 242
                 477888889999***********************999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2666.61
//
Query:       CCE26849.1  [L=193]
Description: uncharacterized protein CPUR_00318 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-29  102.0   9.7    7.8e-29  100.7   9.7    1.8  1  DNA_pol_delta_4  DNA polymerase delta, subunit 4
  ------ inclusion threshold ------
      0.038   14.0   0.3      0.054   13.5   0.3    1.2  1  DUF892           Domain of unknown function (DUF892)
       0.46   10.6   3.1       0.67   10.1   3.1    1.2  1  ATP-synt_B       ATP synthase B/B' CF(0)
        1.7    8.4   7.5          2    8.2   7.5    1.2  1  RR_TM4-6         Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> DNA_pol_delta_4  DNA polymerase delta, subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   9.7   1.7e-32   7.8e-29       5     129 ..      63     177 ..      23     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 1.7e-32
  DNA_pol_delta_4   5 vrkkekesevdkekkvssaekeevaetkepekleeelkaekelekqidkewkkieeerkappvHaeelskvekvLreFDvsskYGPciGltRle 98 
                      v+kk + +e ++e++ +s++++   et+ p  +e+e++a k+++++i+k+wk+ie++rka++vH++++s +ekvLr+FDvss+YG         
       CCE26849.1  63 VNKKDE-NEAEHEHEEESQQQAPRLETAPPIISETETRAGKLTDAHINKYWKSIERQRKASRVHQQGISVNEKVLRYFDVSSQYG--------- 146
                      334443.333334444566667777789999******************************************************......... PP

  DNA_pol_delta_4  99 RWkRAeklgLnPPeevkavLlkeeaeeekkk 129
                      RW+RAe+lgLnPP+ev+avLlke+++ ++++
       CCE26849.1 147 RWNRAERLGLNPPVEVLAVLLKEHKKPNDEV 177
                      *************************999887 PP

>> DUF892  Domain of unknown function (DUF892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   1.2e-05     0.054      35     147 ..      67     178 ..      52     189 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTT-------.-HHHHTTT-----------THHHHHHH...HHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH CS
      DUF892  35 eLkaaleqHleeTegqierLeqvferlgesasekkcdamegliaegqelieeaaedeslkdaaliaaaqavehyEiAsYgtLialAeqlgekeaaklLe 133
                 + ++a  +H ee ++q+ rLe     + e+  +   +  +  i++  + ie++ + + +   ++    + +++++++s     + Ae+lg +  +++L 
  CCE26849.1  67 DENEAEHEHEEESQQQAPRLETAPPIISETETRAG-KLTDAHINKYWKSIERQRKASRVHQQGISVNEKVLRYFDVSSQYGRWNRAERLGLNPPVEVLA 164
                 55566689*******************77777777.9**************************7777788899999987777899************** PP

                 HHHHHHHHHHHHHH CS
      DUF892 134 qtleeekatdeklt 147
                   l+e k+ ++ ++
  CCE26849.1 165 VLLKEHKKPNDEVE 178
                 *****999877665 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.1   0.00015      0.67      30      99 ..      50     121 ..      38     136 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
  ATP-synt_B  30 kReekIadeiaeAeerrkeaaa.llaeaeqqlkeArae.AaeiiknAkkeaeklkeeieaeaeaeaerlkes 99 
                 +R + I+++ +e  ++++e +a  + e+e q++  r e A  ii + + +a kl ++ +++  +++er++++
  CCE26849.1  50 ERTKPIEEKTKEDVNKKDENEAeHEHEEESQQQAPRLEtAPPIISETETRAGKLTDAHINKYWKSIERQRKA 121
                 789999988776555555555505555555555556653889**************************9876 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.5   0.00045         2      70     172 ..      17     120 ..       3     139 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00045
                 XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXX CS
    RR_TM4-6  70 LgDlseteaeesptpelkkkla.....eeeeaeeekeeeeepeaeaeekadaengekeekeke.keeeekeseeeeeekkkkkkakskkkeeaeaeese 162
                  + +s t+  ++p ++  k +       +    e+++  ee+++e+ +k+d     ++e+e+e +ee++++++  e++ +  ++++++  + ++a+  +
  CCE26849.1  17 QSTISFTNKVTKPVAKNVKSVVatpkpATVDIPERTKPIEEKTKEDVNKKD-----ENEAEHEhEEESQQQAPRLETAPPIISETETRAGKLTDAHINK 110
                 444444444444332222222211111222222223333333333333333.....2222222134455566666666777777777777777888888 PP

                 -HHHHHHHHH CS
    RR_TM4-6 163 llkklevyqt 172
                 ++k++e +++
  CCE26849.1 111 YWKSIERQRK 120
                 8888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1753  (0.0977746); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 1470.97
//
Query:       CCE26850.1  [L=424]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-15   56.0   0.0    1.2e-07   31.4   0.0    2.6  2  Pkinase      Protein kinase domain
     0.0015   17.9   0.0        1.5    8.0   0.0    2.8  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     1e-08   9.3e-05       2     126 ..      60     184 ..      59     205 .. 0.76
   2 !   31.4   0.0   1.4e-11   1.2e-07     130     264 .]     246     414 ..     239     414 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1e-08
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHC.HHHHHHHHHHHHHHHHHS..CTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekak.kkkekkvlrEikilkklk..hpnivrlyevfee....kdelylvleyveggeladllerkg 93 
                 + + klG G+f++V  a++  +++ vA+K+   +++   ++e ++l+ i+     k   +++++l+++f        + +lv+e+v    l d      
  CCE26850.1  60 RIMFKLGFGAFATVWLARDLVEKRFVALKVGLGSDEPlPDREAEILSQIRETGPGKhgYERVIELLDAFVVegpnGFHQCLVTEVVL--PLSDPKA--- 153
                 56679************************97666554044446666666666555544589******99876665667789999988..4444443... PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SG CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKp 126
                    ++   ++++qi+eg+++lH +gi+H D   
  CCE26850.1 154 --RQHCSYDVVRQIVEGFAFLHGEGIVHGDPHI 184
                 ..34555699******************99555 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 1.4e-11
                 EEETTTEEEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHH...TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT CS
     Pkinase 130 LidekgelKitDFGlakelesssk....ltsfvgtseYlAPEvl...keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg 221
                 +  ++  +Ki+ FG a +++++ +    + +++  +e++  E+     ++  s+++D+W++G++ly   +g ++ s++ + +++   + q        g
  CCE26850.1 246 FPGDSVTVKIMGFGRAHRINKDPNllgaVPKMIRPPEFVLDELCddrIGSTWSEAADIWAVGCTLYHANSGYQLISATGSLKDYLLRAIQ------FGG 338
                 5555667**************9977666666666777777777776434677************************66666655555555......344 PP

                 SHH...HHHTTS.................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 222 etkeklpeasei.................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 +  e++p+  +                                    ++++++k++l  +p +R  ++ ll++p++
  CCE26850.1 339 PPPETWPKVWDTedrqqeislcdrvqvwevrvadrnsseiahdeeRLTFLNFIKRMLITNPDERTPMTALLSDPFM 414
                 3333333333334555667889999*****************9988899************************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0004       3.6      61     128 ..     119     181 ..      59     190 .. 0.56
   2 !    8.0   0.0   0.00017       1.5     132     197 ..     243     312 ..     228     339 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0004
                  TTB--EEEEEESSSS....EEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST CS
  Pkinase_Tyr  61 pnivkllgvctkeep....llivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrd 128
                  +++++ll + + e+p     ++vte v        L  + ++k + +  ++++ q+ +G ++L+ + +vH d
   CCE26850.1 119 ERVIELLDAFVVEGPngfhQCLVTEVV--------LPLS-DPKARQHCSYDVVRQIVEGFAFLHGEGIVHGD 181
                  556666655554444233344444433........2222.5567777788999*****************98 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00017
                  GGEEEEETTEEEE-STTTHEETTTSSEE.EETTSSTSGGGGS-HHHHHHSE...EEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 132 rNvLlsenkvvkisDfGLardiekddey.vkkeeaklpvkWmapEslkekk...ftsksDvWsfGvllwE 197
                  + v+  ++ +vki  fG a++i+kd +   +  +   p +++  E  +++     ++++D+W+ G +l+ 
   CCE26850.1 243 KKVFPGDSVTVKIMGFGRAHRINKDPNLlGAVPKMIRPPEFVLDELCDDRIgstWSEAADIWAVGCTLYH 312
                  5566667789************99999845556667899999999999988888999**********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.79
# Mc/sec: 1626.03
//
Query:       CCE26851.1  [L=649]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-11   44.4   0.0    0.00011   21.7   0.0    2.5  2  Pkinase      Protein kinase domain
  ------ inclusion threshold ------
       0.05   12.9   0.0       0.51    9.6   0.0    2.3  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.2e-08   0.00011       2     123 ..      60     183 ..      59     191 .. 0.79
   2 !   20.2   0.0   3.5e-08   0.00031     136     264 .]     254     401 ..     241     401 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.2e-08
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS..CTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk..hpnivrlyevfee....kdelylvleyveggeladllerkg 93 
                 + + klG G+f++V  a++  +++ vAvK+   +++   ++  ++l+ i+     k   +++++l+++f        + +lv+e+v+   l++  +r  
  CCE26851.1  60 RIMLKLGYGAFATVWLARDLVEKRYVAVKVGHGSDNPLPDReGEILSQIRKTGPGKrgYERVIELLDAFVVrgpnGFHQCLVTEVVSP--LNHPDTR-- 154
                 56779************************9988877654443667777766665556799********998777677889******94..4444443.. PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrD 123
                     +   ++++qi+eg+++lH +gi+H D
  CCE26851.1 155 -RHCSGSYDVVRQIVEGFAFLHGEGIVHGD 183
                 .2334456899*****************98 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 3.5e-08
                 EEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH........TTSCBSHHHHHHHHHH..HHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT... CS
     Pkinase 136 elKitDFGlakelessskltsfvgtseYlAPEvl........keneyskkvDvWslGv..ilyelltgkppfsgekgkekvekeldqlekilkilg... 221
                  +Ki DFG a ++++  +     + +   +PE          +++  s+++D+W++G+  i+++  +++  +++++g++  ++++ + +ki+ + +   
  CCE26851.1 254 TIKILDFGRAYKISEADPNLLGAVPEMIQPPEDAlhelchgsSGSTWSEAADIWAVGCtkIFFSGQFNSVDLPQKRGRKFGSRKIGN-TKIVALCDrvk 351
                 49*************99855555555666666444666698556777***********33345555666667767777666666666.44444444555 PP

                 ..SHH...HHHTTS.....-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 222 ..etkeklpeasei.....seeakdllkkllkkdpkkRltaeellqhpyl 264
                   e++e+ ++ s+i        +++l+k+++  +p +R  ++ ll++p++
  CCE26851.1 352 vwEVREANRNSSKIaqdeeRLAFLNLVKRMIITNPDERTPMTALLSDPFM 401
                 564444444444447766677899**********************9997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   5.7e-05      0.51       5     128 ..      63     183 ..      59     189 .. 0.77
   2 ?    0.1   0.0     0.045     4e+02     141     194 ..     254     312 ..     245     338 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 5.7e-05
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS..-BTTB--EEEEEESSSS....EEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkkl..khpnivkllgvctkeep....llivteyvkgGdLlkfLrk 94 
                   klG Gaf++V+ ++       ++  VavK+   +++   +++ e+l++++         +++++ll + + ++p     ++vte v+       L++
   CCE26851.1  63 LKLGYGAFATVWLARDL----VEKRYVAVKVGhgSDNPLPDREGEILSQIRKTGPGkrGYERVIELLDAFVVRGPngfhQCLVTEVVS------PLNH 150
                  689*********99988....77888999988223444455677788877776544336899*****999966664445778887765......5777 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrd 128
                    +++ +++  ++++ q+ +G ++L+ + +vH d
   CCE26851.1 151 P-DTRRHCSGSYDVVRQIVEGFAFLHGEGIVHGD 183
                  6.778889999*********************98 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.045
                  EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE........EEHHHHHHHHHHH CS
  Pkinase_Tyr 141 vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk........ftsksDvWsfGvl 194
                  ++ki DfG a +i   +e   +  + +p    +pE   ++          ++++D+W+ G +
   CCE26851.1 254 TIKILDFGRAYKI---SEADPNLLGAVPEMIQPPEDALHELchgssgstWSEAADIWAVGCT 312
                  7899999999988...4444455555666666666554444455567778889999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4382.24
//
Query:       CCE26852.1  [L=426]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-14   51.9   0.0    7.1e-06   25.6   0.0    2.5  2  Pkinase      Protein kinase domain
    0.00065   19.1   0.0       0.39    9.9   0.0    2.4  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.7e-09   2.4e-05       3     129 ..      61     187 ..      59     222 .. 0.77
   2 !   25.6   0.0     8e-10   7.1e-06     136     264 .]     252     416 ..     232     416 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.7e-09
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCH.HHHHHHHHHHHHHHHHS..CTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHHHHSS CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakk.kkekkvlrEikilkklk..hpnivrlyevfee....kdelylvleyveggeladllerkgs 94 
                    klG G++++V  a++  +++ vAvK+   +++   ++e ++l+ i+     k   +++++l+++f        + +lv+e+v+   l d      +
  CCE26852.1  61 ITFKLGFGASATVWLARDLVDKRYVAVKVGLGSDNPLpDREAEILSQIRETGPGKrgYERVIQLLDAFVVrgpnGFHQCLVTEVVSP--LSD-----PK 152
                 5669************************9766655440444555555555544446689********99877667788899999993..333.....34 PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGE CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNi 129
                 + ++   ++++qi+eg+++lH +gi+H D   +N+
  CCE26852.1 153 IRQHCSYDVVRQIVEGFAFLHGEGIVHGDPHIANF 187
                 66777889********************9777776 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 8e-10
                 EEEE-SGTTSEESSSSCSBCTTTSCGGGS..-HHHH........TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH CS
     Pkinase 136 elKitDFGlakelessskltsfvgtseYl..APEvl........keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetk 224
                  +Ki+ FG a +++++    +  g   ++  +PE +         ++  s+++D+W++G++ly + +g ++ s+    +++ +  d+l + ++  g+  
  CCE26852.1 252 TVKIMGFGRAHRINKDP---DLLGAVPWMirPPEFVldelcddrIGSTWSEAADIWAVGCTLYDVKSGGELISK----STMGSLKDNLLRAIQFGGPPP 343
                 49*************98...66666666544788777666676334677************************3....334445555555566666333 PP

                 ...HHHTTS....................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 225 eklpeasei....................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 e++p+   +                                       +++++k+++  +p +R   + ll++p++
  CCE26852.1 344 ETWPK---VwitedrqqenslcdrdqvwevreadrnsskiahdeeRLAFLNFIKRMIITNPDERTPTALLLSDPFM 416
                 33332...2333566677778999999***************98888899**************999999988886 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00041       3.7      96     128 ..     149     181 ..      60     190 .. 0.74
   2 !    9.9   0.0   4.4e-05      0.39     141     203 ..     252     318 ..     237     348 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00041
                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrd 128
                  +++k++ +  ++++ q+ +G ++L+ + +vH d
   CCE26852.1 149 SDPKIRQHCSYDVVRQIVEGFAFLHGEGIVHGD 181
                  4567788888999******************99 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 4.4e-05
                  EEEE-STTTHEETTTSSEEEETTSSTSGGGGS..-HHHHHHSE........EEHHHHHHHHHHHHHHHHTTSS CS
  Pkinase_Tyr 141 vvkisDfGLardiekddeyvkkeeaklpvkWm..apEslkekk........ftsksDvWsfGvllwEiftlge 203
                  +vki  fG a++i+kd +          v Wm  +pE + ++          ++++D+W+ G +l+ + + ge
   CCE26852.1 252 TVKIMGFGRAHRINKDPD------LLGAVPWMirPPEFVLDELcddrigstWSEAADIWAVGCTLYDVKSGGE 318
                  789999999998844444......44455555557777666666666699899***************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3114.87
//
Query:       CCE26853.1  [L=417]
Description: related to GTP-binding protein beta subunit-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-21   75.3  17.8    1.5e-07   31.9   1.6    7.1  7  WD40            WD domain, G-beta repeat
      2e-12   47.3   1.6      0.008   16.5   0.0    4.7  5  ANAPC4_WD40     Anaphase-promoting complex subunit 4 WD40 dom
    5.5e-11   42.5   7.1    5.5e-11   42.5   7.1    1.8  2  Ribosomal_L32p  Ribosomal L32p protein family
    0.00023   21.1   0.1      0.012   15.5   0.0    3.1  4  eIF2A           Eukaryotic translation initiation factor eIF2
    0.00056   18.7   0.4      0.011   14.4   0.2    2.1  2  Nup160          Nucleoporin Nup120/160
     0.0013   18.1   0.0      0.015   14.6   0.0    2.3  2  WD40_like       WD40-like domain
     0.0055   15.7   0.6         17    4.3   0.3    3.8  3  Ge1_WD40        WD40 region of Ge1, enhancer of mRNA-decappin
  ------ inclusion threshold ------
       0.01   15.2   0.2         11    5.3   0.0    3.8  5  Nbas_N          Neuroblastoma-amplified sequence, N terminal
      0.047   13.4   0.3        1.1    8.9   0.0    2.4  2  Hira            TUP1-like enhancer of split


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.011        22       3      36 ..     107     139 ..     105     144 .. 0.79
   2 !    7.7   0.2    0.0034       6.9       9      37 ..     156     185 ..     149     185 .. 0.82
   3 !   16.2   0.1   7.3e-06     0.014      12      38 .]     207     235 ..     193     235 .. 0.83
   4 !    8.6   0.0    0.0018       3.6      15      38 .]     260     283 ..     247     283 .. 0.91
   5 !   10.1   0.0   0.00061       1.2       3      37 ..     289     324 ..     287     325 .. 0.80
   6 !   31.9   1.6   7.7e-11   1.5e-07       2      38 .]     330     367 ..     329     367 .. 0.92
   7 ?   -0.2   0.0       1.1   2.3e+03       7      36 ..     377     410 ..     370     412 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.011
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 c+  l++H +++ sla+ p   + ++G+   t+++
  CCE26853.1 107 CQNCLRAHiTDIFSLAVTPKAVL-SAGG-SSTLHV 139
                 88899***999*9**99999888.5677.666655 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0034
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +H  + +++++s+dg+  as++  g v++W
  CCE26853.1 156 AHkLGCHHICTSRDGKVAASAGFGGEVKLW 185
                 5643468999*******999888******* PP

  == domain 3  score: 16.2 bits;  conditional E-value: 7.3e-06
                 S..EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 s..vtslafspdgawlasGsdDgtvriWd 38 
                 +  v++la s +g++las + Dg v +W+
  CCE26853.1 207 PgeVWALALSENGSYLASTTNDGRVNVWN 235
                 456**************9999*******8 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0018
                 EEEEETTSSEEEEEETTSEEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriWd 38 
                 s++ s+dg++ asG+ +g+v+i++
  CCE26853.1 260 SVDLSRDGKYTASGHQNGSVYIFN 283
                 7888******99**********97 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00061
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  l++l+G  ++v+s+afsp ++ la+++d g + ++
  CCE26853.1 289 ILYSLSGLaKPVRSVAFSPASTRLAAAGDAGIIALY 324
                 67788888889**************99966666555 PP

  == domain 6  score: 31.9 bits;  conditional E-value: 7.7e-11
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++++ ltGH s++t  ++s+ g +l+sGs+Dg+v++W+
  CCE26853.1 330 EHVGNLTGHsSWITTTDWSDTGEYLLSGSMDGKVKVWS 367
                 67899****777*************************5 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 1.1
                 EESS.SSEEEEEEETTSSE...EEEEETTSEEEE CS
        WD40   7 ltGH.ssvtslafspdgaw...lasGsdDgtvri 36 
                  t   +  +++++ p  +    +++G+ ++++ +
  CCE26853.1 377 HTETdKALWAVRWLPKTSKcemFCTGGANRSLSF 410
                 3333333777744444444666678888888766 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.9   3.9e+03      40      65 ..     160     185 ..     152     193 .. 0.74
   2 !    8.9   0.0   0.00094       1.9      37      68 ..     206     237 ..     194     254 .. 0.79
   3 !    8.0   0.0    0.0017       3.4      46      77 ..     263     294 ..     258     299 .. 0.89
   4 !   16.5   0.0     4e-06     0.008      39      91 ..     298     349 ..     292     350 .. 0.92
   5 !   13.8   0.4   2.8e-05     0.055      38      89 ..     339     389 ..     336     392 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.9
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrll 65 
                    ++++ + dgk+ a a   gev+l 
   CCE26853.1 160 GCHHICTSRDGKVAASAGFGGEVKLW 185
                  55667778888988888888888876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00094
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldae 68 
                  + +ev +La +++g+ La  ++dg+v++ ++ 
   CCE26853.1 206 KPGEVWALALSENGSYLASTTNDGRVNVWNIA 237
                  567999********************998874 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0017
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaesgkvvhsls 77 
                   + dgk  a ++++g+v +++  +g+++ sls
   CCE26853.1 263 LSRDGKYTASGHQNGSVYIFNNDTGRILYSLS 294
                  5789***********************98875 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 4e-06
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                  + vrs+a++p  + La a + g + l+d+++g+ v +l+ +s+  +t+ +W++
   CCE26853.1 298 KPVRSVAFSPASTRLAAAGDAGIIALYDMKHGEHVGNLTGHSS-WITTTDWSD 349
                  78************************************99999.699999986 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 2.8e-05
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +s ++   W+  g+ L  +  dg+v++ ++es ++v + + +++ a   + W
   CCE26853.1 339 SSWITTTDWSDTGEYLLSGSMDGKVKVWSVESLTCVATHTETDK-ALWAVRW 389
                  56689999**************************9998866655.5777777 PP

>> Ribosomal_L32p  Ribosomal L32p protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   7.1   2.8e-14   5.5e-11       1      45 [.      64     110 ..      64     116 .. 0.96
   2 ?   -3.1   0.6       4.9   9.8e+03      39      45 ..     162     168 ..     161     172 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 2.8e-14
                     S--SS---HHHHHHHGGG.T-----.-EEEETTTCCEECTTC-BTTT CS
  Ribosomal_L32p   1 AVPKrKtSksrrrkRrah.wklkap.nlvecpncgelklpHrvcpsc 45 
                     AVPK+KtS++++r+R+ + ++l+    l ec+ cg++k++Hr+c +c
      CCE26853.1  64 AVPKKKTSHAKKRHRQMAgKALEDVhGLCECSGCGATKRSHRLCQNC 110
                     9*****************78999999********************* PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.9
                     TC-BTTT CS
  Ribosomal_L32p  39 Hrvcpsc 45 
                     H++c+s+
      CCE26853.1 162 HHICTSR 168
                     9***987 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.7   7.4e+03     106     130 ..     164     185 ..     154     191 .. 0.76
   2 ?    0.3   0.0      0.27   5.4e+02     124     146 ..     228     252 ..     212     273 .. 0.75
   3 !   15.5   0.0   5.9e-06     0.012      78     169 ..     272     365 ..     269     369 .. 0.80
   4 ?    2.0   0.0     0.081   1.6e+02     121     147 ..     357     383 ..     356     403 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.7
                 EEE-TTSSEEEEE-TTSSS-EEEEE CS
       eIF2A 106 iffspkgklvllaGfgnlaGeleiw 130
                 i  s  gk+ + aGfg   Ge+++w
  CCE26853.1 164 ICTSRDGKVAASAGFG---GEVKLW 185
                 5567789999999998...566666 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.27
                 S-EEEEEETT..TTEEEEEEE-TT- CS
       eIF2A 124 aGeleiwdvk..kkkkiakaeaana 146
                  G++++w+    +k+ki+++e a a
  CCE26853.1 228 DGRVNVWNIAgeTKTKIQEYETASA 252
                 4999999998777888888887766 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 5.9e-06
                 ESSSSCEEEEEECS.CEEEEEEE..EES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEE..E-TT--EEEE-TTSSEEEEEE-TTT-SS CS
       eIF2A  78 yGkmpakvslfdlk.vkviskle..eqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiaka..eaanatlvewspdgryvlTattaprlrv 169
                  G+++ +v++f+++ ++++++l+  +++  ++ fsp  + ++ aG    aG ++++d+k+ +++ ++  ++++ t+ +ws +g+y+l  +   +++v
  CCE26853.1 272 SGHQNGSVYIFNNDtGRILYSLSglAKPVRSVAFSPASTRLAAAGD---AGIIALYDMKHGEHVGNLtgHSSWITTTDWSDTGEYLLSGSMDGKVKV 365
                 588999999**99657777777633788999********9999985...377*******999998762257888************98776555544 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.081
                 TSSS-EEEEEETTTTEEEEEEE-TT-- CS
       eIF2A 121 gnlaGeleiwdvkkkkkiakaeaanat 147
                 g++ G++++w v++++++a+  +++  
  CCE26853.1 357 GSMDGKVKVWSVESLTCVATHTETDKA 383
                 7899*********99999988776544 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.023        46     226     259 ..     216     248 ..     182     311 .. 0.78
   2 !   14.4   0.2   5.7e-06     0.011     221     259 ..     343     381 ..     329     398 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.023
                 ...TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 226 veigqtylfalsrdgkLrvWnlltgkclatidll 259
                 +e + +yl++ + dg++ vWn++  + +  ++  
  CCE26853.1 216 SE-NGSYLASTTNDGRVNVWNIAGETKTKIQEYE 248
                 44.678999************9988887776665 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 5.7e-06
                 EET.....TTTEEEEEETT-EEEEEETTTTEEEEE.EE-- CS
      Nup160 221 vavavveigqtylfalsrdgkLrvWnlltgkclat.idll 259
                 ++++ ++ +  yl++ s dgk++vW++++++c+at  +++
  CCE26853.1 343 TTTDWSD-TGEYLLSGSMDGKVKVWSVESLTCVAThTETD 381
                 5555666.77899**********************77777 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.16   3.3e+02       2      38 ..     209     245 ..     208     251 .. 0.84
   2 !   14.6   0.0   7.6e-06     0.015       5     123 ..     260     379 ..     259     384 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.16
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsiv 38 
                 e++++ +s++gs+++   +d ++ v ++  +++  i 
  CCE26853.1 209 EVWALALSENGSYLASTTNDGRVNVWNIAGETKTKIQ 245
                 899999****************999999877666554 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 7.6e-06
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlD.Gtillslleneeeven.ekieedistvkv..iddklliGt 99 
                 s+d+s++g++ + G ++  + +++ +++ + +++ ++   v  v +      l ++ D G i l++++++e+v n +     i+t +   +++ ll G+
  CCE26853.1 260 SVDLSRDGKYTASGHQNGSVYIFNNDTGRILYSLSGLAKPVRSVAFSPASTRLAAAGDaGIIALYDMKHGEHVGNlTGHSSWITTTDWsdTGEYLLSGS 358
                 89***********************************************99999998879999********88762556677999876225678999** PP

   WD40_like 100 nkGsiyvfskdlqleevllgqsse 123
                   G++ v+s +     +++  ++e
  CCE26853.1 359 MDGKVKVWSVE---SLTCVATHTE 379
                 ********998...4444544444 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.18   3.6e+02     195     217 ..     166     188 ..     151     195 .. 0.84
   2 !    4.1   0.0    0.0091        18     190     219 ..     210     239 ..     185     247 .. 0.83
   3 !    4.3   0.3    0.0084        17     189     214 ..     341     366 ..     268     384 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.18
    Ge1_WD40 195 fspdGtalatasedGevkffqvy 217
                  s dG + a a   Gevk++ ++
  CCE26853.1 166 TSRDGKVAASAGFGGEVKLWALN 188
                 689***************99765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0091
    Ge1_WD40 190 iveaafspdGtalatasedGevkffqvyle 219
                 +   a+s +G  la +++dG v  + +  e
  CCE26853.1 210 VWALALSENGSYLASTTNDGRVNVWNIAGE 239
                 666799*******************99655 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0084
    Ge1_WD40 189 liveaafspdGtalatasedGevkff 214
                  i+++ +s  G  l   s+dG+vk +
  CCE26853.1 341 WITTTDWSDTGEYLLSGSMDGKVKVW 366
                 34444444444444444444444444 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0054        11     226     269 ..     155     196 ..      89     209 .. 0.88
   2 ?    4.3   0.0     0.011        22     232     260 ..     210     238 ..     201     251 .. 0.86
   3 ?   -2.4   0.0       1.2   2.4e+03     230     256 ..     254     282 ..     242     286 .. 0.78
   4 ?    0.2   0.0      0.19   3.7e+02      47      74 ..     301     328 ..     295     371 .. 0.77
   5 ?   -0.9   0.0      0.41   8.2e+02     238     268 ..     348     378 ..     334     384 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0054
      Nbas_N 226 aeekdgvfkmslspdgtllavihfsgklsiwdipslkqrgeweq 269
                 +  k g  ++  s dg + a   f g++ +w++  l   gew+ 
  CCE26853.1 155 DAHKLGCHHICTSRDGKVAASAGFGGEVKLWALNEL--TGEWSS 196
                 45677999999*********************9977..477765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.011
      Nbas_N 232 vfkmslspdgtllavihfsgklsiwdips 260
                 v+ ++ls +g+ la     g++++w+i  
  CCE26853.1 210 VWALALSENGSYLASTTNDGRVNVWNIAG 238
                 78899*********************975 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.2
      Nbas_N 230 dgvfkms..lspdgtllavihfsgklsiw 256
                  g f ms  ls dg   a  h  g++ i+
  CCE26853.1 254 SGSFGMSvdLSRDGKYTASGHQNGSVYIF 282
                 56777764479999999999999998876 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.19
      Nbas_N  47 rrvawshdctllayaestgtvrvfdlvg 74 
                 r va+s   t la a  +g + ++d+  
  CCE26853.1 301 RSVAFSPASTRLAAAGDAGIIALYDMKH 328
                 6777777777777777777777777654 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.41
      Nbas_N 238 spdgtllavihfsgklsiwdipslkqrgewe 268
                 s  g  l    + gk+ +w++ sl   ++  
  CCE26853.1 348 SDTGEYLLSGSMDGKVKVWSVESLTCVATHT 378
                 55667777778899********998777655 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00058       1.1      16      42 ..     214     240 ..     209     287 .. 0.82
   2 ?    1.9   0.2     0.076   1.5e+02      21      51 ..     351     381 ..     343     392 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00058
        Hira  16 fLessgsyLlavtsvgllyvWnvkkkk 42 
                  L+ +gsyL+  t++g++ vWn+  ++
  CCE26853.1 214 ALSENGSYLASTTNDGRVNVWNIAGET 240
                 577789*****************4433 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.076
        Hira  21 gsyLlavtsvgllyvWnvkkkkvllppvsla 51 
                 g+yLl  + +g + vW v++ +++ ++++  
  CCE26853.1 351 GEYLLSGSMDGKVKVWSVESLTCVATHTETD 381
                 588999999**************98777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2999.41
//
Query:       CCE26854.1  [L=338]
Description: probable CDC10 cell division control protein 10 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     3e-112  374.5   0.7   3.6e-112  374.3   0.7    1.0  1  Septin        Septin
    8.6e-08   32.3   0.0    1.5e-07   31.5   0.0    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
      2e-06   27.3   0.0    3.8e-06   26.4   0.0    1.5  1  AIG1          AIG1 family
    2.5e-06   27.5   0.2    5.4e-05   23.2   0.1    2.2  2  RsgA_GTPase   RsgA GTPase
    3.2e-05   23.6   0.5     0.0039   16.7   0.1    2.3  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    0.00084   19.4   0.2        1.2    9.2   0.1    2.5  2  Dynamin_N     Dynamin family
     0.0028   17.2   0.1      0.016   14.7   0.0    2.0  2  AAA_7         P-loop containing dynein motor region
     0.0028   16.9   0.0     0.0047   16.1   0.0    1.3  1  NB-ARC        NB-ARC domain
     0.0077   16.8   0.3      0.015   15.8   0.3    1.8  1  ABC_tran      ABC transporter
     0.0099   16.1   0.0      0.021   15.1   0.0    1.6  1  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.023   15.1   0.0      0.058   13.8   0.0    1.7  1  AAA_16        AAA ATPase domain
      0.028   14.6   0.0      0.055   13.7   0.0    1.5  1  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.031   13.4   0.6       0.19   10.9   0.2    1.8  2  G-alpha       G-protein alpha subunit
      0.031   13.6   0.2        0.3   10.4   0.0    2.1  2  Gtr1_RagA     Gtr1/RagA G protein conserved region
      0.057   12.8   0.1       0.11   11.8   0.1    1.4  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.081   12.9   0.0       0.27   11.2   0.0    1.9  1  Microtub_bd   Microtubule binding
      0.089   12.4   0.1       0.32   10.6   0.0    1.9  2  Ras           Ras family
       0.14   11.9   0.2       0.37   10.6   0.0    1.7  1  AAA_29        P-loop containing region of AAA domain
       0.17   11.9   0.0        0.3   11.1   0.0    1.4  1  SLATT_fungal  SMODS and SLOG-associating 2TM effector domain


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.3   0.7  3.8e-115  3.6e-112       1     278 [.      30     306 ..      30     309 .. 0.98

  Alignments for each domain:
  == domain 1  score: 374.3 bits;  conditional E-value: 3.8e-115
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHHHHH CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeeylre 99 
                 +g++f++++vG+ glGk+tlint+f+++l++++   e+ e +++t+ei++ +++iee+gv+l+l+++Dtpg+Gd v+n+++w+piv+yi++q+++ylr+
  CCE26854.1  30 RGFQFNVICVGQTGLGKSTLINTIFASHLMDSKGRMEPDEIIRSTTEIQSVSHIIEENGVRLRLNIVDTPGYGDLVNNDRCWDPIVKYIKDQHSAYLRK 128
                 69************************************************************************************************* PP

                 CTSS--.SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHHHHH CS
      Septin 100 esklkR.kkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakelsek 197
                 e +++R + i+D+R+H+cl+fi+P+gh lkp+d+ ++kkls+ vn++PviaKaDtlt eE + fK++i+ee++ +++k+y  +d ee ++ee ++l+ +
  CCE26854.1 129 ELTAQReRYIQDTRIHCCLFFIQPSGHSLKPIDIVVLKKLSDVVNVVPVIAKADTLTVEERQIFKERIKEEFAFHNLKMYP-YDNEEFDEEE-RSLNGQ 225
                 ******8889***********************************************************************.9998888666.99**** PP

                 HHHC-SEEB-SSSSEEEESSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XXXXX CS
      Septin 198 lkeslPfaivgsneliekkgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklsklkek 278
                 +k  +Pfa+vgs++ i  +gk+vrgR+ +WGv++ve+e+h++F+ Lr++ll+thl+dL+e+t++++Yet+R+++l +lke+
  CCE26854.1 226 IKGLVPFAVVGSEKSIMVDGKQVRGRQNRWGVINVEDENHCEFVYLRNFLLRTHLQDLIETTSQIHYETFRAKQLLALKES 306
                 ***************************************************************************988765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   1.6e-10   1.5e-07       2     102 ..      36     169 ..      35     189 .. 0.61

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.6e-10
                 EEEEESTTSSHHHHHHHHHT......S.TEEESSSTTSSSSEEEEE..EEETT..EEEEEEECGGC................SS...HHHHHH...HHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg......e.kaivsdkpgtTrdinegr..vklkg..keielvDtpGl................ie...gaseek...glg 67 
                 v++vG++  GKStLin+++       + + +  ++   T++i+     ++++g   ++++vDtpG                 i+   +a  +k     +
  CCE26854.1  36 VICVGQTGLGKSTLINTIFAshlmdsKgRMEPDEIIRSTTEIQSVShiIEENGvrLRLNIVDTPGYgdlvnndrcwdpivkyIKdqhSAYLRKeltAQR 134
                 899***************9744444324667777778888886654114444434569*******5555566666665544322222222222112233 PP

                 HHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHHHH CS
    MMR_HSR1  68 kaflaleeadlillvvdaseeklkpldeeleelle 102
                 +++ +  + +  l+ ++ s ++lkp+d  + + l+
  CCE26854.1 135 ERYIQDTRIHCCLFFIQPSGHSLKPIDIVVLKKLS 169
                 33334445677777777665668888777776664 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   4.1e-09   3.8e-06       2      64 ..      35     106 ..      34     126 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 4.1e-09
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS-..-...-SS-EEEEE..EETT..EEEEEEE--SCCCTTC CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqs..v...tkkcqkksr..twdg..kkinViDTPglfdlsv 64 
                 +++ vG+tg GkS+ +N+i  ++  +sk + ++  +   t++ q++s   +++g   ++n++DTPg  dl +
  CCE26854.1  35 NVICVGQTGLGKSTLINTIFASHLMDSKGRMEPdeIirsTTEIQSVSHiiEENGvrLRLNIVDTPGYGDLVN 106
                 799************************99876333322267778888853444455679******9666533 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   5.7e-08   5.4e-05     101     161 ..      35     101 ..      10     105 .. 0.76
   2 ?    2.0   0.0      0.18   1.7e+02      43      97 ..     168     222 ..     147     243 .. 0.63

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5.7e-08
                  EEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETT.TEE.....EESS-SS CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelae.ggl.....liDtPGf 161
                   ++ vGq+G GKStLin++  ++ +  +   e ++  + TT  +++ ++ e +g+     ++DtPG 
   CCE26854.1  35 NVICVGQTGLGKSTLINTIFASHLMDSKGRMEPDEIIRSTTEIQSVSHIIEeNGVrlrlnIVDTPGY 101
                  45679****************99999999999999999999998888875544433333499*9996 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.18
                  HHTT-EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeee...eleelkeelealgyevllvsaktkegleelkell 97 
                   +  +++v v+ K+D l+ ee     e++kee++  +++++     ++e+++e ++ l
   CCE26854.1 168 LSDVVNVVPVIAKADTLTVEErqiFKERIKEEFAFHNLKMY---PYDNEEFDEEERSL 222
                  5566789999******9999933323333333333333333...33444444444444 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   4.2e-06    0.0039       5      84 ..      35     105 ..      33     108 .. 0.79
   2 ?    4.9   0.1     0.018        17     121     165 ..     170     213 ..     158     292 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.2e-06
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSC.SSCEEEEEETTCSSEEEEEEEESSSGGGH CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiT.iksaaisleketkkylinliDtPGHvdFs 84 
                 n++ +g +  GK+TL+ ++ +++ ++sk +            ++E  r  T i+s    +e+++ + ++n++DtPG  d +
  CCE26854.1  35 NVICVGQTGLGKSTLINTIFASHLMDSKGR----------MEPDEIIRSTTeIQSVSHIIEENGVRLRLNIVDTPGYGDLV 105
                 8999****************9999988833..........357888888874444444445699999*********98765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.018
                 TTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT CS
    GTP_EFTU 121 egvpiivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekge 165
                   v+++ +i K+D l  +e +  +e +k+++    ++l+ y++++e
  CCE26854.1 170 DVVNVVPVIAKADTLtVEERQIFKERIKEEF--AFHNLKMYPYDNE 213
                 55889**********7677777788888888..5556666666665 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1    0.0012       1.2       1      24 [.      36      59 ..      36      81 .. 0.84
   2 !    7.9   0.0    0.0031       2.9      99     129 ..      89     122 ..      63     128 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0012
                EEEEEBTTTTHHHHHHHHHTS--S CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedil 24
                ++ vG++  GKS+++n +  ++++
  CCE26854.1 36 VICVGQTGLGKSTLINTIFASHLM 59
                6789**************988855 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0031
                 TS-SEEEEE---B-SSSGTTS..HHHHHHH.STT CS
   Dynamin_N  99 lvkgltlvDlPGldsvnkrdq..elvkeyi.kka 129
                  + +l++vD+PG+ +  ++d   + + +yi +++
  CCE26854.1  89 VRLRLNIVDTPGYGDLVNNDRcwDPIVKYIkDQH 122
                 467899*******997777777899999994444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.7e-05     0.016      33      84 ..      33      86 ..      18     102 .. 0.72
   2 ?   -0.5   0.0      0.79   7.4e+02     126     155 ..     115     147 ..     113     167 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-05
       AAA_7 33 kkpvllvGptGtGKtviikd.llkkld.kekylsltinfsaqtsanqlqdiies 84
                + +v++vG+tG GK+++i++ + ++l  ++  +     + ++t+ +++ +iie+
  CCE26854.1 33 QFNVICVGQTGLGKSTLINTiFASHLMdSKGRMEPDEIIRSTTEIQSVSHIIEE 86
                4689****************8777765233333333445556666666666665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.79
       AAA_7 126 lRqlldyggwYdrkklefk...eikdvqlvaam 155
                 ++ + d++  Y rk+l+ +   +i+d+ + ++ 
  CCE26854.1 115 VKYIKDQHSAYLRKELTAQrerYIQDTRIHCCL 147
                 677789999999999855433379999999885 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     5e-06    0.0047       6      44 ..      21      57 ..      17      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5e-06
                HHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC  6 ekviekLlekdelqslvvalvGmgGvGKttlakqilnks 44
                 ++ +kLl k ++q + v  vG  G+GK+tl++ i+ ++
  CCE26854.1 21 SQIEKKLL-KRGFQ-FNVICVGQTGLGKSTLINTIFASH 57
                68999***.999*9.89999***************9885 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   1.6e-05     0.015      15      45 ..      37      68 ..      33     243 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-05
                EEEESTTSSHHHHHHHHTT.SS--SEEEEEET CS
                xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
    ABC_tran 15 aivGenGaGKStLlkllag.llkpteGeilld 45
                  vG++G GKStL++++   +l + +G+++ d
  CCE26854.1 37 ICVGQTGLGKSTLINTIFAsHLMDSKGRMEPD 68
                569************98651555677877222 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.2e-05     0.021       8      43 ..      36      71 ..      33     147 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.2e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv 43
                ++++G++G GK+tl+++++ ++  ++k ++e++e++
  CCE26854.1 36 VICVGQTGLGKSTLINTIFASHLMDSKGRMEPDEII 71
                68*****************99977666666555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.2e-05     0.058      25      49 ..      34      58 ..      15      95 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.2e-05
      AAA_16 25 elvllsGesGvGKsslvrellrale 49
                 +v+++G+ G GKs+l+++++ +  
  CCE26854.1 34 FNVICVGQTGLGKSTLINTIFASHL 58
                4799****************98655 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.8e-05     0.055       2      65 ..      36     100 ..      35     111 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.8e-05
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCT..TBTTTTCEEEEEEEE-S CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgve..ndkkvkkvklniWDtaG 65 
                 v++vG++g GK++l++ +  ++  +++  +   +++++++ +i++v+   +++  +++lni Dt G
  CCE26854.1  36 VICVGQTGLGKSTLINTIFASHLMDSKGRMEPDEIIRSTT-EIQSVShiIEENGVRLRLNIVDTPG 100
                 899**************99999988877777766665443.4444432234455579999999988 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2    0.0002      0.19      10      47 ..      22      57 ..      16      98 .. 0.60
   2 ?    0.2   0.0      0.34   3.2e+02     298     336 ..     101     142 ..      86     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
                XXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHC CS
     G-alpha 10 slkaerkarkkkrevkllllGqseSGKsTilkqlklly 47
                ++++  k  k+ ++++++++Gq + GKsT+++ +   +
  CCE26854.1 22 QIEK--KLLKRGFQFNVICVGQTGLGKSTLINTIFASH 57
                3333..345556799****************9987444 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.34
                 --H.CCH...HHHHHHHHHHHHHCCCCCCESGGSCEEEEEE- CS
     G-alpha 298 yegrknd...lesvlkylrnkFeeihkeksnnrrkiythfts 336
                 y++  n+    +  +ky++++ +++++++ + +r+ y++ t 
  CCE26854.1 101 YGDLVNNdrcWDPIVKYIKDQHSAYLRKELTAQRERYIQDTR 142
                 55444444448899*************999999999987665 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00032       0.3       2      64 ..      36     107 ..      35     127 .. 0.68
   2 ?    0.8   0.1      0.27   2.5e+02     105     140 ..     165     200 ..     158     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00032
   Gtr1_RagA   2 vLLmGksgsGKtsmrsiiFdnylardtlrlgati......dve.ksev..rflgnltlnlwDcgGqeafvee 64 
                 v+ +G+ g GK+++ + iF+  l     r++         +++  s++  ++   l ln++D +G  ++v++
  CCE26854.1  36 VICVGQTGLGKSTLINTIFASHLMDSKGRMEPDEiirsttEIQsVSHIieENGVRLRLNIVDTPGYGDLVNN 107
                 7789***************98766555555432222222233312333012333589*********999987 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.27
   Gtr1_RagA 105 lrqyspeakvfvlihKmDliqedereeifeerkeei 140
                 l++ s  ++v   i K D ++ +er+   e++kee 
  CCE26854.1 165 LKKLSDVVNVVPVIAKADTLTVEERQIFKERIKEEF 200
                 6788888999999*******9999988888887765 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00012      0.11      40      65 ..      34      59 ..      11      64 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
                  .SEEEE--TTSSHHHHHHHHHHHHHT CS
  FtsK_SpoIIIE 40 shllvaGatgsGKStalntLilSlat 65
                   +++ +G tg GKSt +nt+ +S ++
    CCE26854.1 34 FNVICVGQTGLGKSTLINTIFASHLM 59
                  599*****************999876 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00028      0.27      72     102 ..      21      52 ..      11      95 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
                  HHHHHHHH.TT--EEEEEEES........... CS
  Microtub_bd  72 sqlvqsal.dgynvcifaygqTGsGKtyTmeg 102
                  sq+ +  l +g +++++++gqTG GK+  +++
   CCE26854.1  21 SQIEKKLLkRGFQFNVICVGQTGLGKSTLINT 52 
                  45556667899***************855444 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00033      0.32       2      57 ..      36     100 ..      35     106 .. 0.74
   2 ?   -2.1   0.0       2.8   2.6e+03      65     116 ..     134     183 ..     128     207 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00033
                 EEEEESTTSSHHHHHHHHHHSSCSSS.........CTTTSSEEEEEEEEEETTEEEEEEEEEETT CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkee.........yesTigvdfytkeievdgkevkleiwDTAG 57 
                 ++ vG+++ GK++l++    ++  ++           sT  +++ ++ ie +g +++l+i DT G
  CCE26854.1  36 VICVGQTGLGKSTLINTIFASHLMDSkgrmepdeiIRSTTEIQSVSHIIEENGVRLRLNIVDTPG 100
                 799***********98866655543311111112256888899999999999***********98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.8
                 HHHHHTTESEEEEEEETT.BHHHHHTHH.HHHHHHHHHSTTTSEEEEEEETTTG CS
         Ras  65 relyyrdaegillvydit.sresfenvk.kwveeikrvaeenvpivLvGnKvDl 116
                 re y++d++   +++ i+ s +s++ ++   ++++++v++    +v v  K+D 
  CCE26854.1 134 RERYIQDTRIHCCLFFIQpSGHSLKPIDiVVLKKLSDVVN----VVPVIAKADT 183
                 5666777766666666652446676666444555555554....3333344443 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00039      0.37      24      42 ..      35      53 ..      24      62 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
      AAA_29 24 atlltGpsGsGKSTllDAi 42
                +++ +G++G GKSTl+  i
  CCE26854.1 35 NVICVGQTGLGKSTLINTI 53
                56789**********9765 PP

>> SLATT_fungal  SMODS and SLOG-associating 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00032       0.3      55      92 ..      50      94 ..      42     138 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
  SLATT_fungal 55 lnTviAglLArlrgsgePersrkrrkdlekvireiea.......f 92
                  +nT+ A+ L   +g+ eP+  ++ + +++ v   ie+        
    CCE26854.1 50 INTIFASHLMDSKGRMEPDEIIRSTTEIQSVSHIIEEngvrlrlN 94
                  8**********************************9966443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 2566.29
//
Query:       CCE26855.1  [L=217]
Description: probable guanylate kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-61  206.4   0.0    3.1e-61  206.2   0.0    1.0  1  Guanylate_kin  Guanylate kinase
     0.0011   19.1   0.0     0.0093   16.1   0.0    2.1  1  AAA_33         AAA domain
     0.0034   17.7   0.0     0.0097   16.2   0.0    1.7  2  AAA_22         AAA domain
     0.0048   17.3   0.0      0.009   16.4   0.0    1.6  1  AAA_16         AAA ATPase domain
     0.0091   15.7   0.0       0.03   14.0   0.0    1.9  1  AAA_24         AAA domain
  ------ inclusion threshold ------
      0.029   14.3   0.0       0.06   13.3   0.0    1.5  1  RsgA_GTPase    RsgA GTPase
      0.049   13.7   0.0       0.39   10.8   0.0    2.1  2  MMR_HSR1       50S ribosome-binding GTPase
      0.054   13.4   0.0      0.074   13.0   0.0    1.3  1  Rad17          Rad17 P-loop domain
       0.13   12.8   0.3       0.45   11.1   0.3    2.1  1  AAA_18         AAA domain


Domain annotation for each model (and alignments):
>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.2   0.0   1.5e-64   3.1e-61       2     180 ..      30     212 ..      29     214 .. 0.97

  Alignments for each domain:
  == domain 1  score: 206.2 bits;  conditional E-value: 1.5e-64
                    SSEEEEESTTTSSHHHHHHHHHHHSTTTEEE--EEESS---TTS-TTTSEEE--HHHHHHHHHTTTEEEEEEETTEEEEEEHHHHHHHHHTTSEEE CS
  Guanylate_kin   2 rrpvvlvgpsgaGksslkkaLlselpekfgvsvshtTrdprkgevdGkdYyFvskeemekdiskneflEaaefsgnlygtsveaieevlekgkivi 97 
                    +rp++++gpsg+Gk +l k L++++p++f +svshtTr pr+ge dG dY+Fvs e++e  is+n f+E+a+f gn ygts+ +iee   kgkiv+
     CCE26855.1  30 HRPLIISGPSGVGKGTLYKRLFDNHPDTFCLSVSHTTRGPRPGEQDGIDYHFVSMEAFEDLISQNGFVEHAKFGGNRYGTSKMTIEEQGRKGKIVV 125
                    69********************************************************************************************** PP

                    EE--CHHHHHHHHTTTTEEEEEEEESSHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHGGG.C...SSEEEEESSHHHHHHHHHHHHH CS
  Guanylate_kin  98 LDvdiqavkqlrkaelspiivFikppslkelqrrlksrgkeqeeklakrlaaaekelqey.e...fdvvivnddleealkklkelle 180
                    LD+++++vkq+++ +++++++Fi+ppsl++l+ rl++rg+e e +++krla+a+kel+ +     +d +ivnddl++a+k+l+e++ 
     CCE26855.1 126 LDIEMEGVKQIKQSSIAARYIFIAPPSLSALEARLRGRGTEDETSVQKRLAQAHKELEFSkTpgvHDKIIVNDDLDTAYKELEEYIY 212
                    *******************************************************9988844789*******************996 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.7e-06    0.0093       3      46 ..      34      78 ..      33     184 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.7e-06
      AAA_33  3 llvGlpGsGKstlaerllkklg.avllssdtlrrrlfgtdqqskt 46
                ++ G++G+GK tl++rl  +++ ++ ls     r  ++ +q+ + 
  CCE26855.1 34 IISGPSGVGKGTLYKRLFDNHPdTFCLSVSHTTRGPRPGEQDGID 78
                678*******************97777776644444444444443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.8e-06    0.0097       6      30 ..      31      55 ..      28      72 .. 0.83
   2 ?   -3.1   0.0       4.3   8.5e+03     101     114 ..      80      92 ..      74     102 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.8e-06
      AAA_22  6 gilvvtGesGtGKTtllrrlleqld 30
                + l++ G+sG+GK tl++rl+++++
  CCE26855.1 31 RPLIISGPSGVGKGTLYKRLFDNHP 55
                5689******************985 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.3
      AAA_22 101 qhlrseealeeLrs 114
                 +++ s+ea+e+L s
  CCE26855.1  80 HFV-SMEAFEDLIS 92 
                 334.8999999965 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.5e-06     0.009      23      52 ..      27      62 ..      20     216 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.5e-06
      AAA_16 23 rp..elvllsGesGvGKsslvrellralekd....g 52
                +p  + +++sG+sGvGK +l ++l++   ++     
  CCE26855.1 27 SPdhRPLIISGPSGVGKGTLYKRLFDNHPDTfclsV 62
                3344899*****************987666633322 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.5e-05      0.03       5      72 ..      33     127 ..      30     217 .] 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
      AAA_24   5 iliyGpsgiGKTtlakel...gpkplfidtekGlksldadkfpdie....swedfldevvel....................aaeladyktlviD 72 
                 ++i Gpsg+GK tl k+l    p+++++ + + ++   + + + i     s+e+f d + ++                    +++ ++ k++v+D
  CCE26855.1  33 LIISGPSGVGKGTLYKRLfdnHPDTFCLSVSHTTRGPRPGEQDGIDyhfvSMEAFEDLISQNgfvehakfggnrygtskmtiEEQGRKGKIVVLD 127
                 5799************************9888887777777777777788777777777777777999999999999999998888888999888 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     3e-05      0.06     101     122 ..      32      53 ..      17      70 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
                  EEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpe 122
                    ++ G+SGvGK tL ++l  +
   CCE26855.1  32 PLIISGPSGVGKGTLYKRLFDN 53 
                  5789*************99876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00019      0.39       3      55 ..      34      86 ..      33     150 .. 0.63
   2 ?    0.4   0.0      0.33   6.7e+02      39      74 ..     173     208 ..     162     216 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
                EEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSEEEEEEEETTEEEEEEECGG CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge..kaivsdkpgtTrdinegrvklkgkeielvDtpG 55
                +i G + vGK tL ++l+++       +   tTr ++ g+ +  g ++++v +  
  CCE26855.1 34 IISGPSGVGKGTLYKRLFDNhpDTFCLSVSHTTRGPRPGEQD--GIDYHFVSMEA 86
                688***************996556779999999999999766..66666665555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.33
                 EEEEETTEEEEEEECGGCSSHHHHHH.HHHHHHHHHH CS
    MMR_HSR1  39 grvklkgkeielvDtpGliegaseek.glgkaflale 74 
                 +r++  +ke+e+  tpG ++++   + +l  a+++le
  CCE26855.1 173 KRLAQAHKELEFSKTPG-VHDKIIVNdDLDTAYKELE 208
                 44444557899999999.6522222235666665554 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.7e-05     0.074      41      70 ..      26      55 ..      20     139 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.7e-05
       Rad17 41 esrkkriLLisGPsGCgkstvvkvLskelg 70
                +s  +r L+isGPsG gk t  k L  ++ 
  CCE26855.1 26 PSPDHRPLIISGPSGVGKGTLYKRLFDNHP 55
                6677999**************999977765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00023      0.45       2      20 ..      34      52 ..      33     183 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
      AAA_18  2 lltGtpGvGKttlakeLsk 20
                +++G++GvGK tl k+L +
  CCE26855.1 34 IISGPSGVGKGTLYKRLFD 52
                79*************9943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 1767.32
//
Query:       CCE26856.1  [L=490]
Description: probable beta (1-3) glucanosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.9e-105  350.4   0.0   1.1e-104  350.1   0.0    1.1  1  Glyco_hydro_72  Glucanosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_hydro_72  Glucanosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.1   0.0  6.2e-109  1.1e-104       4     314 ..      13     331 ..      10     332 .. 0.96

  Alignments for each domain:
  == domain 1  score: 350.1 bits;  conditional E-value: 6.2e-109
                     XSSTTS--EEEETTEEEETTT-BBE-EEEEE--BE---.---SSB-GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEE CS
  Glyco_hydro_72   4 aaeeaveaieikgnkffdsksgeqfyikGvdyqpggse.evsslvdpladaeaCkrdikllkelgvntvrvyavdnskdhdeCmkalsdagiyvi 97 
                     ++ +av+++ei gn+ f++k+ge+f + G++yqpggs+  ++++ dpl+++eaCkrd++l++ +gvn++rvy+++++++hdeC +++++ag+y++
      CCE26856.1  13 SLVAAVPSLEIEGNEIFNPKTGEKFQVVGIAYQPGGSAgFSDTQPDPLSQPEACKRDAALMQVMGVNAIRVYNLNPNLNHDECASIFNAAGMYMM 107
                     667899*******************************94558889************************************************** PP

                     EES-BT..TBS--TTS-..---HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GG.GHHHHHHHHHHHHHHHHHSSS----EEEEE---TT CS
  Glyco_hydro_72  98 ldlnep..kesinradpassynedllervfkvidafkeyknvlgffaGnevvndksnta.asayvkavvrdvkeyikkkkerkiPvGysaaddae 189
                     ld+n+p   e+++  +p++sy  ++l++ f+v++af +y+n+l ff+Gnev+nd  +++  + y++av+rd+k+yik++ +r+iPvGysaad++ 
      CCE26856.1 108 LDVNSPlvGEALDSGKPWESYYMEYLNHTFAVVEAFGNYPNTLLFFSGNEVINDIPSAKyVPQYLRAVTRDLKNYIKNNLKRQIPVGYSAADVRP 202
                     ******9899*********************************************99996788******************************** PP

                     THHHHHHHTTBTT-......--S-EEEEE----SS.--HHHHSHHHHHHHHTT-SS-EEEEEE---SSSS---THHHHHTSHHHHTTEEEEEES- CS
  Glyco_hydro_72 190 lrvelaeylaCgded....dkadffglnmyeWCgk.ssfktsGydertkefenysiPlflseyGCnkvtprkftevealyseemtsvfsGGlvye 279
                     +  ++ ++++C d +     ++d+f+ln+y+WCg   +f++s +++  + +++ s+P+f+seyGC +  pr ++e  ++ys++mt+v sGG+vye
      CCE26856.1 203 VLWDTWNFMQCSDGTkddmTRSDVFALNSYSWCGIdATFESSTFKDLADGLTKSSLPVFFSEYGCIQPAPRYWNETRTIYSDKMTNVLSGGVVYE 297
                     ***********997765556*************97589********************************************************* PP

                     SB--SSS--SEEE-TTS-EEE-THHHHHHHHHHH- CS
  Glyco_hydro_72 280 yseeannyGlvkiddddvkkllkdfenlkseykki 314
                     +++e+n yGlv+++++  + +l d+++lk++++ i
      CCE26856.1 298 WTQEDNGYGLVSVNGSTLN-VLGDYNRLKEAWATI 331
                     ***************9998.9**********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3595.20
//
Query:       CCE26857.1  [L=489]
Description: probable ATP citrate lyase subunit 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-87  290.7   0.1    4.1e-87  290.3   0.1    1.2  1  Citrate_bind  ATP citrate lyase citrate-binding
    7.2e-09   35.5   0.0    1.3e-08   34.7   0.0    1.4  1  ATP-grasp_2   ATP-grasp domain
    0.00031   19.0   0.0    0.00046   18.4   0.0    1.1  1  Reovirus_M2   Reovirus major virion structural protein Mu-1/M


Domain annotation for each model (and alignments):
>> Citrate_bind  ATP citrate lyase citrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.3   0.1   6.9e-91   4.1e-87       1     176 [.     298     474 ..     298     476 .. 0.99

  Alignments for each domain:
  == domain 1  score: 290.3 bits;  conditional E-value: 6.9e-91
  Citrate_bind   1 relskeeayiaeldaktgaslKltvlnpkgriwtlvaGGGasvvyaDtiadlglaselanYgeysGapseeqtyeyaktildlmtre.krpdgkvli 96 
                   rel+keeayiae+daktgaslKltvlnp+griwtlvaGGGasvvyaD+ia++g+a++lanYgeysGap+e+qty+ya+t+ldlm+r+  +++gkvl+
    CCE26857.1 298 RELTKEEAYIAEMDAKTGASLKLTVLNPTGRIWTLVAGGGASVVYADAIASAGFADDLANYGEYSGAPTESQTYHYARTVLDLMLRApMSDKGKVLF 394
                   7899***********************************************************************************88899***** PP

  Citrate_bind  97 iGggianftnvaatfkgiiraleelksklkehkvkiyvrrggpnyqeglkamkelgeelglpikvfgpethitaivklal 176
                   iGggianftnva+tfkg+iral++++++l eh+v+i+vrr+gpnyqeglk+mk++ +elgl+ k+fgpe+h+++iv+lal
    CCE26857.1 395 IGGGIANFTNVASTFKGVIRALRDYATQLVEHNVQIWVRRAGPNYQEGLKNMKAATQELGLNAKIFGPEMHVSGIVPLAL 474
                   ******************************************************************************98 PP

>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   2.2e-12   1.3e-08      40     202 .]      72     228 ..      51     228 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.2e-12
                  SSEEEEE--SSSTCCCTTCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EEE--EEEEE---..ECEEEEEEEEEETTTTEEEEEEESSTTS-HHHH CS
  ATP-grasp_2  40 kelvvKaQvlaGGRGKagGvklvkskeeakeaakellgkelvtkqtgkeGkkvekvlveeald..ikkElYlsivlDraskkvvviaSseGGvdiEev 135
                   ++v K   l+  RGK+g + l k+  eak+ + e  gke + +    +     + lve  ++   + E+Y+ i   r+  +  +++ +eGGvd+ +v
   CCE26857.1  72 AKFVAKPDQLIKRRGKSGLLALNKTWAEAKAWIAERAGKEQKVEH---TAGVLRQFLVEPFVPhpQDTEYYININSVRD--GDWILFTDEGGVDVGDV 164
                  5678888888899**************************999544...4667899999987651167899988766665..6678899********** PP

                  HHH-GGGEEEEEEBTTTB--HHHHHHHHHHCT--CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE CS
  ATP-grasp_2 136 aakkPekiikvaidpakglkeeqareiakklglekelvkkaakiikklyklfveldatlvEiNPLvv 202
                   ak  + +i v +      +e+ a +++kk  +++ l + ++++i++ly ++v+++ t +EiNPLvv
   CCE26857.1 165 DAKAEKLLIPVDLSE-FPSNEQIAATLLKK--IPEGLHNVLVDFITRLYAVYVDCQFTYLEINPLVV 228
                  999977776555543.34455556666654..7888999**************************96 PP

>> Reovirus_M2  Reovirus major virion structural protein Mu-1/Mu-1C (M2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   7.7e-08   0.00046      32     121 ..     315     413 ..     307     434 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.7e-08
                  XXXXXHHHHX--BEEEEESS...S---SGGGE.....--------B-EE-.-HHHHHHHHHHHHHHHTTHHHHHHTT---S---HHHH-EEEEEEEES CS
  Reovirus_M2  32 aldlkPGvlnPtGklWraiG...tsvasadsl.....alvsdnkeeyvvv.tenaretltkavldlelwrelldalkvgsgsvvlsdlltivdgyvGa 120
                    +lk  vlnPtG++W  +    +sv  ad++     a    n +ey+   te     ++++vldl l  ++ d+ kv+     +++++ +++++ G+
   CCE26857.1 315 GASLKLTVLNPTGRIWTLVAgggASVVYADAIasagfADDLANYGEYSGApTESQTYHYARTVLDLMLRAPMSDKGKVLFIGGGIANFTNVASTFKGV 412
                  5689999*********988435699999999944433333457788885438999999************************************9998 PP

                  S CS
  Reovirus_M2 121 t 121
                   
   CCE26857.1 413 I 413
                  4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3732.11
//
Query:       CCE26858.1  [L=660]
Description: probable ATP citrate lyase subunit 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-20   71.5   0.0    5.2e-17   62.0   0.0    3.0  2  Citrate_synt  Citrate synthase, C-terminal domain
    1.2e-18   67.6   0.0    4.9e-18   65.6   0.0    2.1  2  CoA_binding   CoA binding domain
      4e-15   56.0   0.1    7.2e-15   55.1   0.1    1.4  1  Ligase_CoA    CoA-ligase
    3.2e-05   23.7   0.0    0.00034   20.4   0.0    2.2  2  Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00057       2.5      12      52 ..     388     430 ..     380     434 .. 0.80
   2 !   62.0   0.0   1.2e-20   5.2e-17     163     354 ..     428     627 ..     422     633 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00057
                   SEEEETTTTE.EEETTEEHHHHHHHHS-HHHHHHHHHH.SS-- CS
  Citrate_synt  12 isevdgekge.lrYRGydieeLaeekssfeevaylLlt.gelP 52 
                   is++  ++g+ l+Y G++i +  +e   +  v+ lL++  +lP
    CCE26858.1 388 ISTISDDRGQeLLYAGMPISDVFREDIGIGGVMSLLWFrRRLP 430
                   55665556777************99999********9944466 PP

  == domain 2  score: 62.0 bits;  conditional E-value: 1.2e-20
                   ---HHHHHHHHHHHHHHS--SSSHHHHHHHHHHT.TT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG.GHHHHHHHHHHTTTS--TTBC- CS
  Citrate_synt 163 kpdeeeaklldlalvlhaDHelnaSTfaarvvaS.tladlysaiaagigalkGplhgganeavlkmleeigsaeveveeylekvlakekerlpGfGH 258
                   +  + + k+l+++l+l aDH+ ++S ++  +++  ++ dl+sa+++g+ +  G + gga + + + ++++ ++ +  +e+++++ +  ++ +pG+GH
    CCE26858.1 428 RLPDYASKFLEMVLMLTADHGPAVSGAMNTIITTrAGKDLISALVSGLLTI-GSRFGGALDGAADEFTRAFDKGLSPREFVDSMRKG-NKLIPGIGH 522
                   55667899**************99988776665449**************9.999999999999888888788779********885.6******** PP

                   SSSS..S--HHHHHHHHHHHHHHTCHTHHHHHHHHHHHHHHHHHHHHCHHGCT-EB-THHHHHHHHHHT....T.--GGG.........HHHHHHHH CS
  Citrate_synt 259 rvyk..ksDpRakilkelaeelaeekgkdpllklaeeleevapevlkekeeknlypNvDfysgvlyral....g.ipeel.........ftvlfais 339
                   rv +  + D R++++ke++     +  +++ll+ a ++e v+ +    k+  nl  NvD   +v +  l    g + +e             lf+++
    CCE26858.1 523 RVKSrnNPDLRVELVKEYVLA---KFPSHKLLDYALAVETVTTS----KK-DNLILNVDGCIAVCFVDLlrncGaFSTEEaedylqmgvLNGLFVLG 611
                   **96336788*********44...367999**************....34.89******998886644322223233332344456566889***** PP

                   HHHHHHHHHHHHH.HT CS
  Citrate_synt 340 RvaGwlAhileql.ad 354
                   R++G +Ah l+q+  +
    CCE26858.1 612 RSIGLIAHFLDQKrLR 627
                   ***********87444 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.1e-21   4.9e-18       2      96 .]      42     147 ..      41     147 .. 0.98
   2 ?   -1.8   0.0       1.1   5.1e+03      70      90 ..     148     168 ..     148     170 .. 0.88

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 1.1e-21
                  TTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEET.........TEEEESCHHHHHHHC.TTTEEEEES-HHHHHHHHHHHHH.TT-S CS
  CoA_binding   2 kdtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevl.........glpvyksvdeleekt.evdvavitvPaesaqeavdelve.agik 88 
                   +t+++v+G + ++ +g+++f++ +k+++++v+g+ ++++g+ v+          lpvy++v++++ k+ +vdv v +++++s++++++el++  ++k
   CCE26858.1  42 DKTRCFVYGLQPRAVQGMLDFDFICKRKNPSVAGIIYTFGGQFVSkmywgtsetLLPVYQQVEKAMSKHpDVDVVVNFASSRSVYSSTLELMQfPQVK 139
                  68*******************************************************************88*************************** PP

                  EEEEESST CS
  CoA_binding  89 giviiteg 96 
                  +i+ii+eg
   CCE26858.1 140 TIAIIAEG 147
                  ******97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                  S-HHHHHHHHHHHHHTT-SEE CS
  CoA_binding  70 vPaesaqeavdelveagikgi 90 
                  vP+++a+e++  + ++gi  i
   CCE26858.1 148 VPERRAREIAHIAKKKGITII 168
                  899999999999999999765 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.1   1.6e-18   7.2e-15       1     151 [.     207     330 ..     207     332 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1.6e-18
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHH CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkai 99 
                 ++++G++++e++++i+++              + + +e i++G+d+++         +t++i+++ +++adp  k+++l +++G g +e+++ + +k+ 
  CCE26858.1 207 VSKSGGMSNELNNIISQN--------------TDGVYEGIAIGGDRYP---------GTTFIDHMLRYQADPDCKILVLLGEVG-GVEEYKVIDAVKQG 281
                 579***************..............***************9.........***************************.****9987666665 PP

                 HHTT...--S-EEEEEECTTHH........HHHHHHHTTTSSEEE-SSHHHHHHH CS
  Ligase_CoA 100 keakaegrelpvvarvaGtead..pqels.eqakaleeagveiasskaqalraak 151
                   +      +p+va+ +Gt+a   + e++ ++a+  +++++e+a++k+++ r a+
  CCE26858.1 282 IIT------KPIVAWAIGTCASmfKTEVQfGHAGSFANSQLETAATKNKTMREAG 330
                 555......5************88677778********************99886 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.12   5.5e+02      50      79 ..     133     160 ..     123     172 .. 0.71
   2 !   20.4   0.0   7.6e-08   0.00034       1     134 [.     201     343 ..     201     346 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.12
  Succ_CoA_lig  50 aedpetkvillylEsirdgrkflsaarraa 79 
                    + p++k+i++  E++ ++r+  + + ++a
    CCE26858.1 133 MQFPQVKTIAIIAEGVPERRA--REIAHIA 160
                   56799***********88542..3333333 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 7.6e-08
  Succ_CoA_lig   1 pGkialisqSGalalalldwaasrglgfskvvslGn..eadvdvadlleylaedpetkvillylEsird.grkflsaarraarkkpvvvlksGr..s 92 
                   +G+++ +s+SG++  +l +  +++  g+ + + +G      +++ d +  +++dp++k+++l  E  +    k ++a+++   +kp+v++  G+  s
    CCE26858.1 201 KGSVGYVSKSGGMSNELNNIISQNTDGVYEGIAIGGdrYPGTTFIDHMLRYQADPDCKILVLLGEVGGVeEYKVIDAVKQGIITKPIVAWAIGTcaS 297
                   599*******************************9833357889999999999*********9996665379*********************9887 PP

  Succ_CoA_lig  93 eagaraaashtgalagsd....avvdaafrqaGvlrvdsleelfda 134
                     +++    h g+ a+s+    a+ ++ +r+aG+++ +++e++ ++
    CCE26858.1 298 MFKTEVQFGHAGSFANSQletaATKNKTMREAGFYVPNTFEDMPSV 343
                   77888889999999988633225667789***********999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4557.17
//
Query:       CCE26859.1  [L=87]
Description: probable ribosomal protein L30 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-15   55.2   0.3    6.3e-15   54.8   0.3    1.2  1  Ribosomal_L30  Ribosomal protein L30p/L7e


Domain annotation for each model (and alignments):
>> Ribosomal_L30  Ribosomal protein L30p/L7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.3   3.5e-19   6.3e-15       2      51 .]       5      54 ..       4      54 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 3.5e-19
                   EEEE-S-STTS-HHHHHHHHHTT-SSTTEEEE--SSHHHHHHHHHCCCGE CS
  Ribosomal_L30  2 fVtrirsiigvppkvrktLqlLgLrkingtvvklntpsirGmLkkVkhlV 51
                   ++t+ rs+ig+p ++r +L +LgLr++ +tv+k+ +p  +Gm+ kVk+lV
     CCE26859.1  5 RITLHRSAIGLPLRTRGVLAALGLRRRTQTVFKPVNPLFAGMIMKVKELV 54
                   8************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 655.73
//
Query:       CCE26860.1  [L=318]
Description: related to Chromo domain protein Alp13 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-59  200.6   0.0    2.3e-59  200.0   0.0    1.2  1  MRG         MRG
     0.0039   17.0   0.0     0.0073   16.2   0.0    1.5  1  Tudor-knot  RNA binding activity-knot of a chromodomain


Domain annotation for each model (and alignments):
>> MRG  MRG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.0   0.0   2.6e-63   2.3e-59       7     197 ..     131     305 ..     122     306 .. 0.94

  Alignments for each domain:
  == domain 1  score: 200.0 bits;  conditional E-value: 2.6e-63
         MRG   7 eseeekkkrpeikvkleipeeLkklLedDwelitknkklvkLPaklnvkeILedYvkheakkkaetsereaeknvellkevvdgLriyFdftlgkiLLY 105
                 e+e++++++p i+  l++p+++++lL+dDwe+itkn++lv+LP+ ++v +ILedY+ +e+ ++ e s      + ++l+evv+g+r+yFd+ l++iLLY
  CCE26860.1 131 EQEDTFHSKPAIN--LPVPDHIQALLVDDWENITKNNQLVPLPHPKPVAKILEDYLSYERPHRVEGS-----ASMDILEEVVAGIREYFDKSLSRILLY 222
                 59999******99..**********************************************999965.....4569*********************** PP

         MRG 106 kfEraqykevlkkaeeekklelessseadqekepseiYGaeHLlRllvkLpellaktsmdekklklLlkhleeflefLaenheeyFseseYv 197
                 +fEr+qy++++k +++ +        ++ + k +++++GaeHL+Rl+v+Lpella+t+md++++++L++++ +f+ +L +n e+yF+ +eY+
  CCE26860.1 223 RFERHQYMDIRKLWDSAD--------QSSKYKGVCDVFGAEHLARLIVSLPELLAQTNMDQQSVSRLREEIGKFTMWLGRNCETYFV-TEYE 305
                 ************998876........366789*******************************************************.9997 PP

>> Tudor-knot  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.1e-07    0.0073       4      54 ..      15      67 ..      12      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.1e-07
                TTEEEEEETTSCEEEEEEEEEEETSSC...EEEEEEETTS-CCC-EEEETTTEE CS
  Tudor-knot  4 gckvlvrkkdgelrkAeilsirekkgk...yeYYVHYeefNkRlDeWVsaerid 54
                 +kvl+++  + l++A++ ++++ +++     Y +HY ++   +D  V a+ri+
  CCE26860.1 15 DEKVLCFH-LDMLYEAKVMDVQPGEKPgdgFRYKIHYKGWKNTWDDLVLADRIR 67
                5899****.999***********77777799***************99999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2208.77
//
Query:       CCE26861.1  [L=1176]
Description: probable alpha-aminoadipate reductase large subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-73  247.5   0.0    1.7e-73  247.0   0.0    1.2  1  NAD_binding_4    Male sterility protein
    2.2e-70  237.4   0.0    3.5e-70  236.7   0.0    1.3  1  AMP-binding      AMP-binding enzyme
      2e-10   40.6   0.0    4.2e-10   39.5   0.0    1.5  1  Epimerase        NAD dependent epimerase/dehydratase family
    2.3e-09   37.4   0.0    5.6e-09   36.2   0.0    1.7  1  PP-binding       Phosphopantetheine attachment site
    1.7e-08   33.8   0.0    4.5e-08   32.4   0.0    1.6  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    7.7e-06   26.8   0.1    0.00034   21.5   0.0    2.9  2  AMP-binding_C    AMP-binding enzyme C-terminal domain
     0.0084   16.0   0.0      0.056   13.3   0.0    2.4  1  NAD_binding_10   NAD(P)H-binding
  ------ inclusion threshold ------
      0.097   11.8   0.0        0.3   10.2   0.0    1.8  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
       0.14   11.2   0.0       0.66    9.0   0.0    1.9  1  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.0   0.0   8.4e-77   1.7e-73       1     256 [.     760    1009 ..     760    1010 .. 0.98

  Alignments for each domain:
  == domain 1  score: 247.0 bits;  conditional E-value: 8.4e-77
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-.SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEE CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvR.aksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdvii 92  
                     lTGaTGFLG++L++++L++t++  +++++vR ak+ ++a eRl+++le ++l+ a++   ++r+++v+GDl++p+lG++++++++lae+vdv+i
     CCE26861.1  760 LTGATGFLGAYLIKDILERTSRSiRLIAHVRsAKEPNAAFERLRRSLEGYGLWCAEW---ESRLSCVVGDLMQPQLGIDDAAWKTLAETVDVVI 850 
                     8****************9999999*******999999*******************8...********************************** PP

                     E--SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHH CS
  NAD_binding_4   93 hsaAtvnfdepykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEk 185 
                     h++Atv+++++y++++ +Nv++t + ++l+++++ + ++ +vS+ ++++++++ +++e+ +++g+++  +d+d++ + +gl ++Y q+K+++E+
     CCE26861.1  851 HNGATVHWVKRYQDMMPANVNSTIDAMRLCNEGRPK-TFTFVSStSVLDTDHYVKLSEQQVSTGQSALLEDDDMMGSRTGLGTGYGQTKWVSEQ 943 
                     *********************************999.*****999************************************************* PP

                     HHHHHHHHH---EEEEEE-EEE--SSST---TTSHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHH CS
  NAD_binding_4  186 lvrearrrsglpvvivRpsiitgesktGwingsdlgirgllgliakgvlpeilgdkeavldlvpvDyvana 256 
                     lvrea+rr gl+ ++vRp++i+g+s+tG++n++d+++r+l+g+i+ gv p+i+++    ++ vpv++va++
     CCE26861.1  944 LVREAGRR-GLRGSVVRPGYILGHSETGVCNTDDFLMRMLKGCIQLGVRPRIVNT----VNSVPVNHVARV 1009
                     ******98.**********************************************....9*********97 PP

>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.7   0.0   1.8e-73   3.5e-70       1     423 []      24     489 ..      24     489 .. 0.85

  Alignments for each domain:
  == domain 1  score: 236.7 bits;  conditional E-value: 1.8e-73
                  HHHHHHHSTTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHT CS
  AMP-binding   1 leeqaaktpdkvalvd....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledse 94 
                  + e+a+k+pd++++v     +   + +TYr+ +e++n +A++L ++Gv++gd+V+i++++s+++vva++++l aGa+  +l+p +++ + +  le ++
   CCE26861.1  24 FSENAQKHPDRICVVEtkssESPERIFTYRQIHEASNLVAHHLHEAGVEHGDVVMIWAHRSVDLVVAIMGTLAAGATMTVLDPLYPPNRQQVYLEVAQ 121
                  6799**********999999888999******************99**************************************************** PP

                  ESEEE............ETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.....-TSCCCS-BTTSEEEEEEE--SSSS- CS
  AMP-binding  95 akvli............atvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekae.....kpeeeeelkpddlayiiYTSGTTGkP 174
                  + +li            a       + +  +++ kl++    + + +d+ll   e+++++  e+         p +++ + pd+  ++ +TSG+ G+P
   CCE26861.1 122 PHALIkiaratdeagplA-----PlVRRYIDEELKLKTEVPSLRIRDDGLLLGGEVNGRDIFES--LrpraaSP-PDVLVGPDSNPTLSFTSGSEGRP 211
                  *****8876655433321.....22233333333444555555566666666655555554443..13456434.66689****************** PP

                  EEEEEEHHHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CC CS
  AMP-binding 175 KGVmlshrnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sg 271
                  KGV  +h +l+    +  + +rf+l++d+++ +   +ah+  +  +++++l+ Ga++ +++k++  + + l+e ++++++tv++++P++ + l+  + 
   CCE26861.1 212 KGVLGRHFSLAKYFPW--MAERFNLSQDSKFTMLSGIAHDPIQ-RDIFTPLFLGAQLLVPSKEDIQH-EKLAEWFRDHSPTVTHLTPAMGQILVGgA- 304
                  *********9998666..678899999***************9.***************99887755.6789*********************9933. PP

                  CHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEE............CHCTTTCTSTTS-BEE-TTEEEEEE-TTT. CS
  AMP-binding 272 alkaakkakdlsslrlvllggeplspellrffralfge.evlegYGlTEttgvvtv............lpleedkkklgsvGkplpgvevkivDeet. 355
                    +      ++++l  ++++g+ l    ++ +r+l  + +v+++YG TEt   v++            l   + k +++ +Gk + +v++ +vD ++ 
   CCE26861.1 305 -SA------EFPALDRAFFVGDVLTTRDVKSLRSLAENvNVVNMYGTTETQRSVSFyeipsrakepdyL--AKLKDTVP-AGKGMQNVQLLVVDRQDs 392
                  .33......899***********************999****************777999999987442..23323344.8************97651 PP

                  SCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE............................T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 356 gepvpdgeeGellvrgpgvmkgYlkkpeataeafds............................e.grwlrTGDlgrldedGyleivgRkkdliklr 423
                  +++++ ge+Ge++vr +g+++gY ++p++++++f +                            + +r++rTGDlgr++e G +e +gR++d++k+r
   CCE26861.1 393 KRLCGVGEVGEIYVRAAGLAEGYRGDPALNEKKFLTswfvsndhwaqkdkaadnnepwrkhyqgPrDRLYRTGDLGRYTESGDVECTGRADDQVKIR 489
                  55669******************************889999*********************975678***************************96 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   2.1e-13   4.2e-10       1     178 [.     758     974 ..     758     989 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 2.1e-13
                 EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC...................EEEE--TT-HH.....HHHHHHHHHT-SEEEE--S- CS
   Epimerase   1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl...................elveldltdrs.....alerlfkeeqpdavihlAav 74 
                 +++tGatGf+G++l+k +le++ + +  +++ +sa++ ++  +                    + v +dl++++     a  + ++e  +d+vih +a 
  CCE26861.1 758 VFLTGATGFLGAYLIKDILERTSRsIRLIAHVRSAKEPNAAFERlrrslegyglwcaewesrlSCVVGDLMQPQlgiddAAWKTLAE-TVDVVIHNGA- 854
                 578*******************66688888877777776666667899***************666666666655555566666665.9*******66. PP

                 --HHHHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGT..........SCSSSS........BSTCSTTS----SSHHHHHHHHHHHHHHH CS
   Epimerase  75 ggvaassedpadfieknlqgtlnlleaarkagvkrllflsSsevYG..........kdaeqp........keettltgplkpnspYaaaKlageklvea 155
                  +v++ +++ +d++ +n++ t + +  +++  +k + f+sS++v            +             +++++  + +   + Y+ +K  +e+lv++
  CCE26861.1 855 -TVHW-VKRYQDMMPANVNSTIDAMRLCNEGRPKTFTFVSSTSVLDtdhyvklseqQ----VstgqsallEDDDMMGSRTGLGTGYGQTKWVSEQLVRE 947
                 .4444.5667889*******************************9966666544431....13443345555555566669999*************** PP

                 HHHHHT-EEEEEEESEEESTT.....S- CS
   Epimerase 156 yaaqyglnaiilrlfnlyGpr.....ng 178
                 + + + l+  ++r+  + G       n 
  CCE26861.1 948 AGRRG-LRGSVVRPGYILGHSetgvcNT 974
                 99887.9*******99999885444444 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   2.8e-12   5.6e-09       3      66 ..     638     702 ..     636     703 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.8e-12
  PP-binding   3 lrelvaevlg.vpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66 
                 + + +ae++  ++++ i+p+ d+fdlG++Slla ++l  ++++ g  ++  +l++hptl  ++a 
  CCE26861.1 638 VATKWAELIPgLNAKTISPQNDFFDLGGHSLLAQQMLLVMRKAVGANVSINTLYAHPTLTGFSAQ 702
                 66777777654899*********************************************988875 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   2.3e-11   4.5e-08       2     218 ..     760    1000 ..     759    1018 .. 0.73

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 2.3e-11
   3Beta_HSD    2 vtGgaGFlGralvkeLvrleelkevrvlD.lrespelleelskvnvkk...............viegDvtdkd......kleealegvdvvihlasl 76  
                  +tG++GFlG++l+k ++++ + + +r +  +r  +e    ++++++                 ++ gD+++ +        +   e vdvvih  + 
  CCE26861.1  760 LTGATGFLGAYLIKDILERTS-RSIRLIAhVRSAKEPNAAFERLRRSLegyglwcaewesrlsCVVGDLMQPQlgiddaAWKTLAETVDVVIHNGAT 855 
                  69*****************96.99**8765666666666666665554566777777788889999**9876531111144555799*******777 PP

   3Beta_HSD   77 vdvagkltedeimkvnvkGTrnvleacvkagvrvlvYtSsaevvgpnsl....geeilngdEeleyesl.......hqdaypesKalaEklvlkaNg 162 
                  v   +  ++d +m +nv+ T   +  c +   +++ ++Ss +v   +++    ++++  g+  l  +             y ++K ++E+lv +a  
  CCE26861.1  856 VHWVK-RYQD-MMPANVNSTIDAMRLCNEGRPKTFTFVSSTSVLDTDHYvklsEQQVSTGQSALLEDDDmmgsrtgLGTGYGQTKWVSEQLVREAGR 950 
                  77766.4444.9*******************************9876542232678888876665554423333346788***************99 PP

   3Beta_HSD  163 rtlknggrlyTcaLRpagiyGegdkllvpllkqlaklglalfkigdeevlsdrvYv 218 
                  r l++        +Rp +i G  ++ + ++   l+++ +  +++g +  +++ v +
  CCE26861.1  951 RGLRGS------VVRPGYILGHSETGVCNTDDFLMRMLKGCIQLGVRPRIVNTVNS 1000
                  666665......99*******99998888777777777777777766655555443 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.7e-07   0.00034      42      76 .]     568     602 ..     505     602 .. 0.86
   2 ?    1.9   0.0      0.23   4.5e+02       4      72 ..    1013    1092 ..    1011    1095 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.7e-07
                    HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C  42 leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    ++ e+++h++ +l++yavp +++++++lp++ +GK
     CCE26861.1 568 MQTEVREHLKGRLPAYAVPTTFIVLAKLPLNPNGK 602
                    789*******************************9 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.23
                     HHHHSSTTEEEEEEE-----TTS---EEEEEE---.......---HHHHHHHHH.....HHHT-TTT.S-SEEEE-S---B- CS
  AMP-binding_C    4 salvshpaVaeaaVvGvpdevkGealvafVvlkdg.......sealeeeLkahv.....rkelgpya.vpkkvvfvdelpkt 72  
                     sal+  p V+ + V G p  +  e+l+ +     g       +e+ ++eL+++v     +k l+ +a  p +  +v++lp +
     CCE26861.1 1013 SALNPLPSVNVVHVTGHPRLRMSEYLAILEYY--GykipevaYEQWKDELEKYVsaggpEKDLEQHAlMPLYHFCVNDLPAN 1092
                     78888999999999998887555555555444..4322222224499*******7777777999998566666678999974 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.8e-05     0.056       1     183 [.     762    1016 ..     762    1017 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-05
                      TTTSHHHHHHHHHHHHC-..T-EEEEEETTHHHCH................HHHCTTTCEEEE--TT-C......CHHHHHHTT-SEEEES-- CS
  NAD_binding_10    1 GAtGkvGrllvkellarg..ghevtalvRnpekla................eleaeeglevvegdvtdv......edlaealkgadaVvsalg 69  
                      GAtG  G +l+k +l+r+   +++ a vR++++ +                  e e++l+ v+gd++++      ++ +   + +d+V+ +++
      CCE26861.1  762 GATGFLGAYLIKDILERTsrSIRLIAHVRSAKEPNaaferlrrslegyglwCAEWESRLSCVVGDLMQPqlgiddAAWKTLAETVDVVIHNGA 854 
                      9****************9888999999999655444456677766666665223568*********975333332688889999*****9996 PP

                      -TCC...HHHH.........HHHHHHHHHHCT--EEEEEEETTTTSG...........CGCHHHHHHH.HCCHHHH.......HHHHHHHHHH CS
  NAD_binding_10   70 gggk...deeg.........aknivdaakeagvkRfvlvsaigvgde...........vpgefgewnk.ellkayl.......aakraaeell 131 
                      + +       +         ++ +++ ++e   k f +vs+  v d            + g+   + + +++++         + k  +e+l+
      CCE26861.1  855 TVHWvkrY--QdmmpanvnsTIDAMRLCNEGRPKTFTFVSSTSVLDTdhyvklseqqvSTGQSALLEDdDMMGSRTglgtgygQTKWVSEQLV 945 
                      64442331..13456663446666666678889***********9843333332222111111111111233322223333368999****** PP

                      HH...SSSEEEEEEE-CEE-ST--SEEEEETTSS--.................--EEEHHHHHHHHHHHCTX CS
  NAD_binding_10  132 ra...sgldwTivrpggLtdepttkyrvvekgepfk.................ggsisradVAdvlvavldd 183 
                      r+   +gl   +vrpg++    +t++  +++    +                  +s++   VA+v+va++ +
      CCE26861.1  946 REagrRGLRGSVVRPGYILGHSETGVCNTDDFLM-RmlkgciqlgvrprivntVNSVPVNHVARVVVASALN 1016
                      9988889**********99999988877743221.1122222333333333223577888888888777766 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00015       0.3       1     128 [.     758     893 ..     758     900 .. 0.62
   2 ?   -3.1   0.0       1.7   3.3e+03     138     173 ..     934     965 ..     933     968 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES....-HHH..HHHHHHH.......-TTEEEE....E--TT-HHH.HHHHTT.....T-SEEEE CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiiller....dElk..lyeiekelee.elkkkklkveivpvigdvrdker.lekale...elkvdvvfh 83 
                      v++tGa+G +G  l++ il+++ ++i+l+ +    +E +    +++++le   l   + + ++ +v+gd+ + +  +++a     + +vdvv+h
       CCE26861.1 758 VFLTGATGFLGAYLIKDILERTSRSIRLIAHvrsaKEPNaaFERLRRSLEGyGLWCAEWESRLSCVVGDLMQPQLgIDDAAWktlAETVDVVIH 851
                      689**********************999876211133221133444443211122234555667888888765431332221011247888888 PP

                      ------HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2  84 aAAlKhVPlveenpleaiktNvlgtenvieaaieagvkkvvliSt 128
                        A+ h   v     +++  Nv +t   ++ + e + k++ ++S+
       CCE26861.1 852 NGATVHW--VK-RYQDMMPANVNSTIDAMRLCNEGRPKTFTFVSS 893
                      8887663..33.345667778888888888888888888887775 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
                      HHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETT CS
  Polysacc_synt_2 138 mGatKrlaekllqalakeseekktkfvvvRfGNVlg 173
                      +G tK ++e+l+ ++ ++      + +vvR G +lg
       CCE26861.1 934 YGQTKWVSEQLVREAGRRG----LRGSVVRPGYILG 965
                      899*******999988877....7888888888887 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00033      0.66     123     163 ..     932     981 ..     757     988 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00033
                    SHHHHHHHHHHHHHHHH-S...SEEEEEE-SEESS......SSS-HHHHH CS
  RmlD_sub_bind 123 nvYGrtKlaGEqavlaagk...kalivRtswvyge......kgknfvktm 163
                    + YG+tK+  Eq v++ag    +  +vR ++++g+      +  +f+ +m
     CCE26861.1 932 TGYGQTKWVSEQLVREAGRrglRGSVVRPGYILGHsetgvcNTDDFLMRM 981
                    56**************7662226779**9999999444444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 7960.19
//
Query:       CCE26862.1  [L=187]
Description: uncharacterized protein CPUR_00331 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-27   93.8   0.0    9.1e-27   93.0   0.0    1.4  1  Cnl2_NKP2    Cnl2/NKP2 family protein
  ------ inclusion threshold ------
      0.035   14.4   0.1      0.065   13.5   0.1    1.5  1  DUF5082      Domain of unknown function (DUF5082)
       0.05   13.9   0.9       0.53   10.6   0.1    2.3  2  DUF4164      Domain of unknown function (DUF4164)
       0.12   11.2   0.1       0.17   10.8   0.1    1.3  1  Spc7         Spc7 kinetochore protein
        0.2   12.1   2.0       0.25   11.8   0.7    2.0  2  Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57


Domain annotation for each model (and alignments):
>> Cnl2_NKP2  Cnl2/NKP2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   2.5e-30   9.1e-27       1      64 [.       5      68 ..       5      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 2.5e-30
   Cnl2_NKP2  1 esdILenfLlspasLptiisleqFkklFPrkkrssPqikrLYrdLqrqrsavldkVranIeeev 64
                esdIL+ +Ll pa+Lp+i++l+qF++lFPr+++++Pq+ rLYrdLq+qr+ v+d+V++nI ee+
  CCE26862.1  5 ESDILTAYLLLPAPLPSITTLDQFRALFPRSLQTNPQVPRLYRDLQAQRNGVVDAVAQNIGEEA 68
                89************************************************************97 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.8e-05     0.065      74     121 ..     109     156 ..      87     158 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
     DUF5082  74 nlessyqtyvdkldelidaieeEIerLenqiseaqgvldtlqsqlnsl 121
                 ++++  q +  +l+ ++ a+e+EI++L  + +++  +++++  +l++l
  CCE26862.1 109 SIKHTLQSILPDLEGAVGALEDEIQQLHDDEEQLLASIAQTVDSLGNL 156
                 78999999999********************************99998 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.097   3.5e+02      24      48 ..      79     104 ..      73     108 .. 0.82
   2 ?   10.6   0.1   0.00015      0.53       3      48 ..     111     157 ..     109     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.097
     DUF4164  24 vdrrleaerkrdeleaei.ealgedr 48 
                 + +rle e++ ++le ei +al  d+
  CCE26862.1  79 LRARLEGEGEAGDLEIEIeRALYGDK 104
                 7789999**********966666665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00015
     DUF4164   3 tkeleaaltrLeaaldsLEkavdrrleaerkr.deleaeiealgedr 48 
                 + +l+++l +Le+a+ +LE+ +++  + e++  +++++++  lg+ r
  CCE26862.1 111 KHTLQSILPDLEGAVGALEDEIQQLHDDEEQLlASIAQTVDSLGNLR 157
                 56788999999999999999999988888877799999999888877 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   4.7e-05      0.17     150     195 ..      99     144 ..      91     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.7e-05
        Spc7 150 gleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles 195
                 +l  dk+ +++ ++ l+++lp+le    +le+e+++l + +e+l +
  CCE26862.1  99 ALYGDKTGIKSIKHTLQSILPDLEGAVGALEDEIQQLHDDEEQLLA 144
                 56779999999*************************9997777654 PP

>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.1   7.5e+03      46      62 ..      65      81 ..      46      87 .. 0.53
   2 ?   11.8   0.7   7.1e-05      0.25      12      47 ..     120     155 ..     109     187 .] 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.1
  Cep57_MT_bd 46 gkrkRkdLaeeleelvk 62
                 g++ R+ +a + e l  
   CCE26862.1 65 GEEARRGVAMRREVLRA 81
                 55555555544444444 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.1e-05
  Cep57_MT_bd  12 aLaevlkeLedEfehlklelqelaaqynaldpslgk 47 
                  +L+  + +LedE+++l+ + ++l a + ++ +slg+
   CCE26862.1 120 DLEGAVGALEDEIQQLHDDEEQLLASIAQTVDSLGN 155
                  56666789***********************99953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1386.84
//
Query:       CCE26863.1  [L=271]
Description: uncharacterized protein CPUR_00332 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1870.65
//
Query:       CCE26864.1  [L=490]
Description: related to cylicin II [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-48  163.8   0.2    4.1e-48  163.8   0.2    2.1  2  CENP-Q    CENP-Q, a CENPA-CAD centromere complex subunit
  ------ inclusion threshold ------
       0.22   10.8   5.2       0.33   10.2   5.2    1.2  1  NOA36     NOA36 protein
       0.56    8.4   2.5       0.75    8.0   2.5    1.2  1  CDC45     CDC45-like protein
        2.5    8.5  18.6        1.3    9.5  14.2    2.5  2  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-
          6    6.2  13.9         11    5.3  13.9    1.4  1  CDC27     DNA polymerase subunit Cdc27


Domain annotation for each model (and alignments):
>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.9      0.61   2.2e+03      98     131 ..      98     131 ..      74     157 .. 0.54
   2 !  163.8   0.2   1.1e-51   4.1e-48       1     167 [.     278     471 ..     278     472 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.61
      CENP-Q  98 dseelslleassdevlgeasgtvfsdlepeldee 131
                 +++++ +++ s++ ++++ +gt   d + ++d+e
  CCE26864.1  98 SNAKRGRPKGSTNRGVSNRRGTRGDDNDNDDDDE 131
                 4444444444444333333333323223233333 PP

  == domain 2  score: 163.8 bits;  conditional E-value: 1.1e-51
      CENP-Q   1 rLlrkLar.lpfPpat..........qsdggkekeldfeklldekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaearerkeklk 88 
                 r+ rk++r lpfPpa+          qsdgg+e+el+fe++ld+k ale+qL+p+l++le L++e+e +e++lerdye+Lr+Le+ a+a+are++  l+
  CCE26864.1 278 RITRKISRgLPFPPASmpanvgraplQSDGGREVELNFESVLDGKVALERQLEPALDGLEVLRREKETLEEELERDYETLRTLEAGARAQAREQRSLLR 376
                 899************************************************************************************************ PP

      CENP-Q  89 kehvllqesdseelslleassdevlgea...................sgtvfsdlepeldeellpllqqLgshLesmrgnlaqlegllpalerskaaL 167
                 ++hvl++ + +++ + + + + e+ ge                    sg+ ++ l+   d++++pl+ qLg h++++r+n++q+++l p+l++s+aaL
  CCE26864.1 377 RAHVLAPVAGNGNGNGNAEGDGEGEGEGvsgreggqfelareedvarSGAFTEILQ---DDDIQPLAVQLGTHVDNIRANFEQTDNLMPQLAKSRAAL 471
                 *******99998888877777766666699**************996666666666...**************************************9 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.2   9.1e-05      0.33     263     299 ..     111     147 ..      67     156 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.1e-05
       NOA36 263 lasgddeddegdedddddddeedddeeeddedeeeee 299
                  + ++++  +gd++d+dddde ++++++dd+d+   +
  CCE26864.1 111 RGVSNRRGTRGDDNDNDDDDEAEEEYQDDDDDSSRAQ 147
                 2333556666666666666666666666666655444 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.5   0.00021      0.75     140     176 ..     122     156 ..      88     267 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00021
       CDC45 140 eeeddddeeeeeeeeedeedeeedeeeskkkrksksd 176
                 +++d+dd++e eee +d++d++++ +  k+ r s++ 
  CCE26864.1 122 DDNDNDDDDEAEEEYQDDDDDSSRAQ--KRGRTSSAT 156
                 11122212222222222222222222..222222222 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  14.2   0.00035       1.3      12      65 ..     102     156 ..      99     166 .. 0.57
   2 ?   -0.2   0.1      0.37   1.3e+03       9      37 ..     167     197 ..     164     206 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00035
     PBP1_TM  12 kGkkakakparkkasrrrrrdddyddeyddeedD..dddddeeeevprkgkkkkpp 65 
                 +G++++  ++r+ ++rr  r dd d++ dde ++  +dddd+++   ++g++++  
  CCE26864.1 102 RGRPKG-STNRGVSNRRGTRGDDNDNDDDDEAEEeyQDDDDDSSRAQKRGRTSSAT 156
                 677765.5589999998888666666444443330033445555555556655533 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.37
     PBP1_TM   9 iGRkGkkakakparkkasrrrrr..dddydd 37 
                 iGR+G ++ ++p  ++a  + +r   +d++d
  CCE26864.1 167 IGRRGIPQPNQPISHAAPDKPQRpsPQDHQD 197
                 9999999888887766665555534444444 PP

>> CDC27  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  13.9    0.0031        11     169     289 ..      44     159 ..      33     231 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0031
       CDC27 169 ssakseskkksaekskdaskettkekaekaasskaaslkkkasaksnimksffkakpaekkkkteakeqkveeeseeekekedkeleddsaaeeeeeee 267
                    k  +++ +++   + s++  ++k+ + ++ + + +k+  +++s  ++s   ++++++k   ++ ++++  + +     +d++++dd++  +eee +
  CCE26864.1  44 PNRK-RAQPSNTSLGGPRSRNPAQPKKSSGPNTSGVAKKR--KSSSIGVASRLSTQSSNAKRGRPKGSTNRGVSNRRGTRGDDNDNDDDDE--AEEEYQ 137
                 3333.34444444455667777778888889888888887..5666667777778888888888888888888888877777888788887..555555 PP

       CDC27 268 kstkkekrrqkklessdeeeee 289
                 ++ ++ +r qk++  s++++  
  CCE26864.1 138 DDDDDSSRAQKRGRTSSATQRS 159
                 5555546777777777665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1069  (0.0596241); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 3596.15
//
Query:       CCE26865.1  [L=162]
Description: probable CPR1-cyclophilin (peptidylprolyl isomerase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-47  161.5   0.6      2e-47  161.4   0.6    1.0  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   0.6   1.1e-51     2e-47       8     155 ..      12     158 ..       5     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 161.4 bits;  conditional E-value: 1.1e-51
  Pro_isomerase   8 s..kGrivieLfadkaPktvenFlklvkeg....fYdgttFhRvikgfmvqgGdptgktsageqe.kkggesiraipdEitsklkh.krGalamar 95 
                    +  +Gri+++L++d +Pkt++nF++l+ +g     Y g++FhRvi++fm+qgGd+t+++  g++  +  g   ++++dE+ ++l+h k+G+l+ma+
     CCE26865.1  12 GspLGRIIFKLYDDVVPKTAANFRALA-TGekgfGYAGSSFHRVIPQFMLQGGDFTNHN--GTGGkSIYG---EKFADEN-FTLRHtKPGLLSMAN 100
                    4568***********************.5668899*******************99984..443323333...69*****.89999899******* PP

  Pro_isomerase  96 tgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetdeerpkknvkivs 155
                    +g  pn++gsqFfIt+  +++ldgk++vFG+Vv+Gmd+v+kie+  +++ +++++++i +
     CCE26865.1 101 AG--PNTNGSQFFITTVVTSWLDGKHVVFGEVVDGMDIVQKIESFGSQSGKTQQKITIDQ 158
                    98..8***************************************5545458888899975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1177.26
//
Query:       CCE26866.1  [L=312]
Description: related to lustrin A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2185.59
//
Query:       CCE26867.1  [L=922]
Description: uncharacterized protein CPUR_00336 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.1e-24   84.1   0.0    3.5e-23   81.9   0.0    2.2  2  RTP1_C1      Required for nuclear transport of RNA pol II C-t
    4.4e-10   39.0   0.8    1.1e-09   37.8   0.8    1.7  1  RTP1_C2      Required for nuclear transport of RNA pol II C-t
  ------ inclusion threshold ------
       0.17   11.6   8.6       0.35   10.6   8.6    1.4  1  Pox_Ag35     Pox virus Ag35 surface protein
       0.37   10.4   5.6       0.84    9.3   5.6    1.6  1  FAM176       FAM176 family
        0.6    8.1   8.1          1    7.4   8.1    1.3  1  DNA_pol_phi  DNA polymerase phi
        6.1    6.7  10.0         12    5.8  10.0    1.4  1  RPN2_C       26S proteasome regulatory subunit RPN2 C-termina
        7.9    6.9  10.2         18    5.8  10.2    1.6  1  PBP1_TM      Transmembrane domain of transglycosylase PBP1 at
        8.6    5.6   7.7         13    5.0   7.7    1.2  1  NOA36        NOA36 protein


Domain annotation for each model (and alignments):
>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   1.6e-26   3.5e-23       9     111 ..     552     652 ..     544     653 .. 0.97
   2 ?   -3.5   0.0       5.3   1.2e+04      70      98 ..     730     756 ..     728     758 .. 0.79

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 1.6e-26
     RTP1_C1   9 qdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleeyeeenekeslderlkvGEaLlrvir 107
                 +d  +pv ++gl +L++li+++s  +vldi++++ l+ + L+d+++Y+ L +i+++++La+++p+++l++Ll++y + +e+ ++d+rl+ GEaLl+vi+
  CCE26867.1 552 RDHPPPVVSEGLAMLSTLITAES--PVLDITAVTVLMSNLLRDNEDYINLRVIRIFTQLANKHPKTTLRELLDNYLDPQEQCTTDTRLRFGEALLQVIE 648
                 5889*******************..************************************************************************** PP

     RTP1_C1 108 rlge 111
                 rlge
  CCE26867.1 649 RLGE 652
                 ***8 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.3
     RTP1_C1  70 vfpeevlklLleeyeeenekeslderlkv 98 
                 + ++e+l ++++ +  e+++ s d r+++
  CCE26867.1 730 RANNEILAQIIQGW--ESKRGSEDIRMRA 756
                 66789999999999..7788888888885 PP

>> RTP1_C2  Required for nuclear transport of RNA pol II C-terminus 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.8   4.9e-13   1.1e-09       3      32 ..     835     864 ..     834     864 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 4.9e-13
     RTP1_C2   3 edlyrtLkyVedtDtDdlVReHArdvLEeL 32 
                 ed+ rtL+yV +tD+D+lV++HArd++E+L
  CCE26867.1 835 EDIQRTLEYVGETDNDGLVQQHARDLVESL 864
                 89**************************98 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   8.6   0.00015      0.35      53     115 ..     673     734 ..     663     746 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
    Pox_Ag35  53 kkkrattprkkpakkekkkkeeekeeaaeeeeledseedeenendedeseesvqaeeeksnes 115
                 + +r++t  k++  ++ +k +++++++a ++   d++e ee e+dede e+s+ +e+e++n++
  CCE26867.1 673 RAHRPKTQAKQAREERLAKMKKKNKNKASAR-DGDEDEREEHEEDEDEDENSMMTETERANNE 734
                 5567777777766655555444444444444.3444455566666777777777777766665 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.6   0.00037      0.84      52      98 ..     685     731 ..     665     752 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00037
      FAM176  52 erlkkkkkklkeesekasededeeeeeeeedsseseaeeelsefert 98 
                 ++++ +k k+k++++ +  d de+e ee+e+++++++++ ++e+er+
  CCE26867.1 685 REERLAKMKKKNKNKASARDGDEDEREEHEEDEDEDENSMMTETERA 731
                 22233333333333333555555555555555555556666666665 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.1   0.00045         1     600     685 ..     645     728 ..     640     754 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00045
  DNA_pol_phi 600 klseqVfeafasevteegLellldvLearen.kegqaelfedededeeddeeeeeeddeededseedddeeesdedeededdedvde 685
                  +++e   e f+ ++ +++ e ll++   r   ++ qa+   ++ e+   +++++++++ +  d +ed+ ee +++++ede++  ++ 
   CCE26867.1 645 QVIERLGETFSGDMAQQTGETLLSIAGRRAHrPKTQAK---QAREERLAKMKKKNKNKASARDGDEDEREEHEEDEDEDENSMMTET 728
                  78888999999999999999999999999884444444...3333333333333333333333333333333333222222222222 PP

>> RPN2_C  26S proteasome regulatory subunit RPN2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  10.0    0.0054        12      47     109 ..     666     728 ..     658     740 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0054
                 HHHHHHHHHHHHHHHHHHG.--------------------------------..--SS----SSE CS
      RPN2_C  47 vLSttakakarakkkekekeeeekeedkmdvdeekeekekkekekkekekee..ekkkkekektf 109
                  LS++ +  +r k ++k+   +e++  km++++++++++++ +e++ +e+ee  +++++   +++
  CCE26867.1 666 LLSIAGRRAHRPKTQAKQA--REERLAKMKKKNKNKASARDGDEDEREEHEEdeDEDENSMMTET 728
                 6888888888877777777..44555555555544444433333333333221133333333333 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  10.2    0.0081        18      18      61 ..     690     731 ..     671     738 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0081
     PBP1_TM  18 akparkkasrrrrrdddyddeyddeedDdddddeeeevprkgkk 61 
                 ak ++k++++ + rd d d+  ++e+++d+d+de++ ++   ++
  CCE26867.1 690 AKMKKKNKNKASARDGDEDE--REEHEEDEDEDENSMMTETERA 731
                 34556666666677777555..5555555677788888776554 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   7.7    0.0059        13     265     299 ..     694     727 ..     659     735 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0059
       NOA36 265 sgddeddegdedddddddeedddeeeddedeeeee 299
                   +++++ +++d d+d+ ee++++e++de++   e
  CCE26867.1 694 K-KNKNKASARDGDEDEREEHEEDEDEDENSMMTE 727
                 1.222222333333333333333333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (922 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1491  (0.0831614); expected 358.6 (0.02)
Passed bias filter:                      884  (0.0493056); expected 358.6 (0.02)
Passed Vit filter:                       181  (0.0100954); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.47
# Mc/sec: 5920.91
//
Query:       CCE26868.1  [L=829]
Description: probable ATP-binding protein PRP16 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-23   83.0   0.2    7.5e-23   80.7   0.0    2.3  3  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    4.6e-18   65.5   0.3    1.1e-17   64.2   0.0    1.9  1  HA2          Helicase associated domain (HA2)
    3.9e-11   43.3   0.0    1.6e-10   41.3   0.0    2.0  2  Helicase_C   Helicase conserved C-terminal domain
    3.3e-08   33.5   0.3    6.7e-08   32.5   0.3    1.5  1  DEAD         DEAD/DEAH box helicase
    1.8e-06   28.3   0.0    4.3e-06   27.0   0.0    1.6  1  AAA_22       AAA domain
    0.00027   20.6   0.5    0.00096   18.8   0.5    1.8  1  SRP54        SRP54-type protein, GTPase domain
    0.00048   19.9   0.0    0.00081   19.2   0.0    1.3  1  AAA_30       AAA domain
     0.0062   15.6   0.0      0.012   14.7   0.0    1.4  1  T2SSE        Type II/IV secretion system protein
     0.0099   16.2   0.1       0.02   15.3   0.1    1.4  1  AAA_19       AAA domain
  ------ inclusion threshold ------
      0.037   14.0   0.2        3.2    7.7   0.1    2.3  2  ResIII       Type III restriction enzyme, res subunit
       0.05   14.0   0.5       0.62   10.5   0.1    2.4  2  AAA          ATPase family associated with various cellular a
       0.08   12.9   0.3        0.2   11.6   0.3    1.7  1  Flavi_DEAD   Flavivirus DEAD domain


Domain annotation for each model (and alignments):
>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.9   5.8e+03      48      60 ..     194     206 ..     188     215 .. 0.71
   2 ?   -2.7   0.0       5.1   7.7e+03       5      18 ..     294     307 ..     294     368 .. 0.41
   3 !   80.7   0.0     5e-26   7.5e-23       1      81 [.     719     794 ..     719     796 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.9
                  SSSEEEEEEEEES CS
  OB_NTP_bind  48 epewvvytelvet 60 
                   p++vvy e+ + 
   CCE26868.1 194 IPQYVVYDEMPKV 206
                  599****996544 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.1
                  HHHHHTTCEEEEEE CS
  OB_NTP_bind   5 llaGlypqiarkdp 18 
                  +l++l+ qia +  
   CCE26868.1 294 ILMALLKQIAARRA 307
                  56778888884222 PP

  == domain 3  score: 80.7 bits;  conditional E-value: 5e-26
                  HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHST CS
  OB_NTP_bind   1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfag 81 
                  +r++ll+G+++q+a+k+ s+k y+t+++++ v+ihps+vl+      + +wv+y+e+v t+k y+r++tai+p+wL+++a+
   CCE26868.1 719 IRRALLSGFFMQVAMKESSGKIYRTVKDDQAVMIHPSTVLR-----TDFDWVLYNEFVLTSKQYIRTCTAIRPEWLMEIAP 794
                  799**************************************.....6*******************************997 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   7.7e-21   1.1e-17       1     108 []     564     652 ..     564     652 .. 0.91

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 7.7e-21
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrklahk 99 
                 Ale L +l +Ld++g+lT+lG+  +e+Pl+p la mL+ +   e+ c +e+++i ++lsv +if +++++               rk++++++++++h+
  CCE26868.1 564 ALEELNYLACLDDDGELTTLGSLASEFPLDPCLAVMLISS--PEFYCSNEILSITSLLSVPQIFSRPANN---------------RKRADEMKSHFSHP 645
                 899*************************************..556*******************999975...............45666667788899 PP

         HA2 100 daegDhltl 108
                 d  gDhltl
  CCE26868.1 646 D--GDHLTL 652
                 9..****97 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       4.3   6.5e+03       6      35 ..     298     327 ..     293     335 .. 0.67
   2 !   41.3   0.0   1.1e-13   1.6e-10       5     110 ..     361     501 ..     356     502 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.3
                 HHHHHHHTTTTSEEEEEESSHHHHHHHHHH CS
  Helicase_C   6 llellkleeeggkilifvntidrlekvkll 35 
                 ll+ +  ++ + ki++++ t d  +  k++
  CCE26868.1 298 LLKQIAARRADLKIIVMSATLDAQKFQKYF 327
                 333336788888999999999955435666 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 1.1e-13
                 HHHHHHHHTTTTSEEEEEESSHHHHHH.HHHH......HHHT....TSTEEEESTTSTHHHHHHHHHHHH.....TTS...SSEEEESGGGTSSSTSTT CS
  Helicase_C   5 allellkleeeggkilifvntidrlek.vkll......lekk....gikvavlhgelpqnereeileqfn.....kge...sdvLiatdvaerGidipk 84 
                 ++l++ + +e +g+il+f++  d++e+ ++ +      l+++     i v +l+g+lp  ++++i+++             ++v+++t++ae++++i++
  CCE26868.1 361 TVLQI-HASEGEGDILLFLTGEDEIEDaCRKInleadeLQREvdagPIAVYPLYGTLPPHQQQRIFDKAPpplrkG-GrpgRKVVVSTNIAETSLTIDG 457
                 44555.588999***********998885555444443333378877**********************8666541.255589**************** PP

                 ESEEEESSSSSSH..................HHHHHHHTTSSST CS
  Helicase_C  85 vnlVinfdlprnv..................tsyiqriGRtgRa 110
                 + +V++ ++ ++                   +s+ qr+GR+gR 
  CCE26868.1 458 IVYVVDPGFSKQKiynprirvesllvspiskASASQRAGRAGRT 501
                 **********55335669999999*******************7 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.3   4.5e-11   6.7e-08      14     174 ..     177     324 ..     165     326 .. 0.78

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 4.5e-11
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHS.TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHH. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyet.kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrldd. 110
                  + ++  +eTGsGKT+     v+   y++  + tg+ + +  P r  a  +++++   ++     +   +g + + d+ s    ++ + ++t g+l++ 
  CCE26868.1 177 TQILVFVGETGSGKTTQIPQYVV---YDEmPKVTGKLVACTQPRRVAATSVAQRVADEMDV---PLGDEVGYSVRFDDCSSS--KTMLKYMTDGMLLRe 267
                 55567889*******98555555...55448999*9*******************999993...343445554554555554..688999*******94 PP

                 HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
        DEAD 111 llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdvk 174
                  ++++   + + ++++lDEa++       d + ++l+q++   +d k    +iv+SATl  ++ +
  CCE26868.1 268 AMHDHD--MTRYSCIILDEAHERTLA--TDILMALLKQIAARRADLK----IIVMSATLDaQKFQ 324
                 445555..*************98886..9**********87777766....********977665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.9e-09   4.3e-06       4     128 ..     176     314 ..     172     323 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.9e-09
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv..fvtlpsst..sskdllrellralglelka...................erlsseell 79 
                 + +ilv +Ge+G+GKTt + +++  ++         p+v   +v ++++     ++++++++ +++++l +                   +  +   l+
  CCE26868.1 176 STQILVFVGETGSGKTTQIPQYVVYDE--------MPKVTgkLVACTQPRrvAATSVAQRVADEMDVPLGDevgysvrfddcsssktmlkYMTDGMLLR 266
                 6799*******************9884........44444679999999989****************************7777655553333333333 PP

      AAA_22  80 ealeqalraravielliiDEaqhlr.seealeeL.rsllnlsrkgvqliLv 128
                 ea++++  +r   +++i+DEa+  +   ++l  L ++++  +r ++++i++
  CCE26868.1 267 EAMHDHDMTR--YSCIILDEAHERTlATDILMALlKQIAA-RRADLKIIVM 314
                 4444444444..56********953345555544255555.7888888876 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.5   6.4e-07   0.00096       2     131 ..     178     324 ..     177     333 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6.4e-07
                 EEEEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEE................SSTTSCHHHHHHHHHHHHHHTT CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkke.gkkvllvaaDtfRaaAveQLktlaeklgvpvik................kkeeadpaavakeavekakeek 83 
                 +++++vG +G+GKTt + +   + +    +  l++++   R+aA+   + +a++++vp+ +                + +      +++ea++  +  +
  CCE26868.1 178 QILVFVGETGSGKTTQIPQYVVYDEMPkVTGKLVACTQPRRVAATSVAQRVADEMDVPLGDevgysvrfddcsssktMLKYMTDGMLLREAMHDHDMTR 276
                 5789***************998887773455566777788999999999********987777777777776443221122244456678888999999 PP

                 SSEEEEEE--SSTTHHHHHHHHHHHHHHHSSSEEEEEEETTBHTHHHH CS
       SRP54  84 idvvlvDTaGrlqndkelmeelkkikkvvkpdevllvldattgqeavk 131
                 + ++++D a      ++++  l k   + ++d +++v++at+  ++++
  CCE26868.1 277 YSCIILDEAHERTLATDILMALLKQIAARRADLKIIVMSATLDAQKFQ 324
                 99*****99866666555555555555567899999999999887765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.4e-07   0.00081      12     118 ..     172     308 ..     163     315 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.4e-07
      AAA_30  12 alltsgdrvavltGpAGtGKttalkalreaweaag...........grviglAptgkaAkvLa....eelgi.....eastiakllkrlk......... 81 
                    +s+ ++ v +G  G+GKtt + +++   e  +           +rv++ +  +++A+++     +e+g      ++s+ + +lk ++         
  CCE26868.1 172 DKYHST-QILVFVGETGSGKTTQIPQYVVYDEMPKvtgklvactqpRRVAATSVAQRVADEMDvplgDEVGYsvrfdDCSSSKTMLKYMTdgmllream 269
                 444555.4999**************99887777767779999999999999999999999988655534443344454444444444334555666667 PP

      AAA_30  82 grarlepgtllivDEag..mvdtkqlaallkaaekagak 118
                 +  ++++ +++i DEa    ++t+ l allk+++++ a 
  CCE26868.1 270 HDHDMTRYSCIILDEAHerTLATDILMALLKQIAARRAD 308
                 76899999********72246999999999998876543 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.8e-06     0.012     110     170 ..     159     220 ..     128     247 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.8e-06
       T2SSE 110 aeealkekiaevlrkavrerglilvsGgTgsGKttll..yallkeinksderivtvEDpvEiq 170
                  +  ++++ +e+l k  ++ +++++ G TgsGKtt +  y++  e++k + ++v    p+ + 
  CCE26868.1 159 RNLPVHKQRQEFLDKY-HSTQILVFVGETGSGKTTQIpqYVVYDEMPKVTGKLVACTQPRRVA 220
                 4555668899999999.888999999**********988999999999999998877776655 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.3e-05      0.02       7     132 ..     174     309 ..     166     313 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerla.algae................atTiHrlalldfddllteal 88 
                 +++ ++l+ ++  G+GKT+ + + v  + e+ +v  + +++  + + Aa  +++r+a +++++                 +T+ +     ++d      
  CCE26868.1 174 YHSTQILVFVGETGSGKTTQIPQYVV-YDEMPKVTGKLVACTQPRRVAATSVAQRVAdEMDVPlgdevgysvrfddcssSKTMLKY----MTDG----- 262
                 677888899999*********99885.45555565555555555666777777776313344465556665555444333333333....1222..... PP

      AAA_19  89 elleeaeeekklqeeellivDEfqdvd...elqyrLlkallgekkkl 132
                  ll+ea +++++++  ++i DE+ + +   +  ++Llk+++ ++++l
  CCE26868.1 263 MLLREAMHDHDMTRYSCIILDEAHERTlatDILMALLKQIAARRADL 309
                 2445777888895666******9875432456778888888766545 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.033        49      23      39 ..     176     192 ..     149     199 .. 0.75
   2 ?    7.7   0.1    0.0021       3.2     124     169 ..     268     318 ..     246     320 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.033
                 TTSEEEEEESTTSTHHH CS
      ResIII  23 rdkrglikmaTGtGKTl 39 
                   + ++++ +TG+GKT 
  CCE26868.1 176 STQILVFVGETGSGKTT 192
                 3334559*********6 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0021
                 ...HHHTTT-SEEEEETGGGTTS.T.....TTHHHHHT---SEEEEEESS- CS
      ResIII 124 eseellrdrfdviiiDEaHrlgakk.....swreilekfkeavllglTATp 169
                 + ++ + +r+ +ii DEaH  + ++       ++i+    + +++ ++AT+
  CCE26868.1 268 AMHDHDMTRYSCIILDEAHERTLATdilmaLLKQIAARRADLKIIVMSATL 318
                 45566677888********87775333333566665555669999999997 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.38   5.7e+02       2      14 ..     181     193 ..     180     199 .. 0.87
   2 ?   10.5   0.1   0.00041      0.62      12     116 ..     222     324 ..     216     329 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.38
                 EEESSTTSSHHHH CS
         AAA   2 llyGppGtGKTll 14 
                 +++G  G GKT+ 
  CCE26868.1 181 VFVGETGSGKTTQ 193
                 799********96 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00041
                 HHHHHHHHHHH..........THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSS CS
         AAA  12 Tllakavakel..........gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkke 100
                 T++a+ va e+          +v+f   s s+ + ky+ +++  +re + +    +  s++++DE+++ + +          +++ +Ll+++   + + 
  CCE26868.1 222 TSVAQRVADEMdvplgdevgySVRFDDCSSSKTMLKYMTDGM-LLREAMHDHDMTR-YSCIILDEAHERTLAT---------DILMALLKQIAARRADL 309
                 899999999984444444443477888999998888888775.6666666644444.6**********98887.........9************9976 PP

                 STEEEEEEESSGGGST CS
         AAA 101 skvivigatnrpdkld 116
                 + +iv+ at + +k++
  CCE26868.1 310 K-IIVMSATLDAQKFQ 324
                 6.88888887777765 PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   0.00013       0.2      13     135 ..     186     317 ..     174     324 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
                 TTS-TTTTHHHHHHHHHHHTT--EEE..EESSHHHHHHHHHHTT.TS......-EEE-------------SEEEEEHHHHHHHHHHT------SEEEEE CS
  Flavi_DEAD  13 PGaGktrkvlpelvkeaierrlrtlv..LaPtrvvlaemeealk.gl......evryktsavkeektgrelvdvmchatftkrllspvrkknyeliimD 102
                  G+Gkt ++   +v + + +    lv    P rv ++ +++ ++ ++      ev y+ + + + ++++ ++  m    + +  ++++ +++y  ii+D
  CCE26868.1 186 TGSGKTTQIPQYVVYDEMPKVTGKLVacTQPRRVAATSVAQRVAdEMdvplgdEVGYSVR-FDDCSSSKTMLKYMTDGMLLREAMHDHDMTRYSCIILD 283
                 678888776555665555555444441134667766666554431230101104444443.447778999***************************** PP

                 TTT--SHHH.HHHHHHHHHHHHTTS-EEEEEESS CS
  Flavi_DEAD 103 eahflDPas.iaarGyletkaeegeaalilltat 135
                 eah    a  i      +  a++ + ++i ++at
  CCE26868.1 284 EAHERTLATdILMALLKQIAARRADLKIIVMSAT 317
                 ***6543330333333333445556677777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 5819.55
//
Query:       CCE26869.1  [L=819]
Description: related to SHK1 KINASE-BINDING protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-66  223.8   0.0      3e-66  223.2   0.0    1.2  1  PRMT5_TIM  PRMT5 TIM barrel domain
      4e-66  222.1   0.0    7.7e-66  221.2   0.0    1.4  1  PRMT5      PRMT5 arginine-N-methyltransferase
    7.5e-55  185.5   0.0    1.2e-54  184.8   0.0    1.3  1  PRMT5_C    PRMT5 oligomerisation domain
  ------ inclusion threshold ------
       0.08   12.7   0.0       0.13   12.0   0.0    1.2  1  Met_10     Met-10+ like-protein
        0.2   12.0   3.5         64    4.0   0.0    3.5  3  DUF3446    Early growth response N-terminal domain


Domain annotation for each model (and alignments):
>> PRMT5_TIM  PRMT5 TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.2   0.0   8.5e-70     3e-66       1     244 [.      39     330 ..      39     384 .. 0.93

  Alignments for each domain:
  == domain 1  score: 223.2 bits;  conditional E-value: 8.5e-70
                 T-SEEEEETT-CCHHT-......................SSSTTCCC--S-SS--CCCS-HHHHHHHEEEE--TT--TT-SSHHHHHHHHHHHHHHHHH CS
   PRMT5_TIM   1 gydfvvlpltnarfkde....................kkdeeadaerrvppltrsdvvlspsdwsqsviglisewidldsedeeirkdsekvLkkelay 79 
                 g++f ++p+tn +fk++                    +  +++ a++ +pplt +d+ l ps  ++ + ++is+widl+s+++ i+++s++vL+ e++y
  CCE26869.1  39 GINFATTPVTNRHFKSRvfklvsdhlslldqateaptSTLTASRADPIIPPLTPDDTGLFPSPAVNTYTAYISPWIDLCSTNPLIASISRQVLNLEVNY 137
                 589*********************************98899999******************************************************* PP

                 HHHHT-SEEEEE--SS.........--HHHHHHHHHHHCCSSS-EEEEEEESSGGGCTT-STCTTS----S...................CCGHHHHHH CS
   PRMT5_TIM  80 aaylglralilpgpsl.......reklanyaraissalesanavtisisiplaedkeleeeeetlanaleg...................dllstWelW 152
                 a+++g+r+++++gps        ++ la+y ra+++al+  + +t++i++p++++  +e+  etla+ + +                   dl+++W  W
  CCE26869.1 138 ANFCGVRSIVIAGPSRdaspnggNQALAQYSRAVQEALTIGSSLTFLIHMPMYREPVDEQAVETLASLELQsnkgkghekaatangseeiDLFAAWASW 236
                 *******************************************************9888877777666555799************************* PP

                 HHHHHHTTT-TCEEEECC--CCGTSHHHHCCCCCTTEEEEEEECGG-EESTTT-EE--HHHHHHHHHHHHTT..-EEEEESSSTTTTTCCCHCH CS
   PRMT5_TIM 153 ntirtlcgyssrLsVaLeLpkelpskeelerWlaEPvkliilsasiFltnkkgypvLskahqallkeffkln..vkiiLsgvekkaksskgdvk 244
                 + +r++c+y+ rL VaL++pk +p+k+ ++rW+aEP +++++  ++F +nk+gyp Lsk hq++++++++l+  ++i+L++v   a++ k d  
  CCE26869.1 237 HHVRSICNYNLRLHVALQIPKVMPEKDLQNRWFAEPMHYLTIGPNAFQKNKAGYPTLSKNHQEMIFSYMRLRavPWILLCDVGPDASNFKVDDM 330
                 *********************************************************************************6555555554444 PP

>> PRMT5  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.2   0.0   2.1e-69   7.7e-66       8     173 .]     400     590 ..     394     590 .. 0.96

  Alignments for each domain:
  == domain 1  score: 221.2 bits;  conditional E-value: 2.1e-69
                 CCGBT-EEEE--TTTS---HHHHHHHCC-CCHHHHHHHHHHHHHHHHCTCCGTCC...-EEEEEEES-TTSHHHHHHHHHHHHHCCCEEEEEEEES-HH CS
       PRMT5   8 seyedvlqapLqPlsdnLesatYevFEkdkvKYelYeeAiekalsdlkkekkkks..ekklvilvvGaGRGplvdralkaleetkvtkvkivavEKnpn 104
                 ++++d+lq+pLqPlsdnLesatYevFE d+vKY++Ye+A+ +als++k+ +  +s  + ++vi+v+G+GRGplv+ralka+e t+  kv+++avEKnpn
  CCE26869.1 400 TSFQDWLQSPLQPLSDNLESATYEVFEGDPVKYDQYEAAVIEALSEWKELNLPTSseDGAVVIAVAGSGRGPLVTRALKAAEFTQ-VKVQVWAVEKNPN 497
                 689*********************************************998777755889*************************.9************ PP

                 HHHHHHHHHHHHTTCCGCEEEES-CCCCCHCC........................-ECEEEE---BTTBCCCSHHHHHHCCGGGCECC.EEEE CS
       PRMT5 105 avvtLqkkvneekWeekveviksdmrelkaee........................kvdllvsELLGSfgdnELsPEcldgvqkflkee.gisi 173
                 a+v+L ++ n++ W+ kv+v+k+dmr++k +                         kvd+l+sELLGSfgdnELsPEcldg+q++l++  gisi
  CCE26869.1 498 AYVYLLRQ-NQTIWGGKVNVVKTDMRAWKGPLvassassssstqteaatatepvygKVDILISELLGSFGDNELSPECLDGIQHVLAQPhGISI 590
                 *****999.99********************9****************************************************9988779987 PP

>> PRMT5_C  PRMT5 oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8   0.0   3.4e-58   1.2e-54       1     177 []     593     819 .]     593     819 .] 0.94

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 3.4e-58
                 EEEEEEEEEE-HHHHHHHHT.....-HHHCS-EEEB--S-EESSS......S-EEEEEEESS-TTSS............................-S-E CS
     PRMT5_C   1 sytsyiaPisapklyqklks.....ekaletpyvvklvkvdklse......kvkevweFehpneeke...........................eener 61 
                 syt++++Pis+pkl++++ +      +a+ tp+vv+l+++d++ +      +++++weF+hp  e++                            +n+r
  CCE26869.1 593 SYTAHMTPISTPKLHADILArsateATAFSTPWVVRLYALDFVCQkvpghpRFQQAWEFTHPVPESTlqsiearrsggimgggggsmagaaganDHNSR 691
                 7*****************9977776699****************99****9************************************************ PP

                 EEEEEEEE-SSEEEEEEEEEEEEEEET.............TEEEE-SCCC...--TT-TS---EEEEEEEEEEE-TTEEEEEEEEEEEESSEEEEEEEE CS
     PRMT5_C  62 sktlefkikekaeihGlagyFeavLYk.............dvelSilPetkeaktkdliSWfpiffPlkkpllvkddselevslwRktdekkvWYEWsv 147
                 s+++++ ++++++ hGlagyFe++LY              +ve+S++Pe +++k+kd+iSWfpiffPl++pl+++ d+elevs+wR+td++kvWYEW v
  CCE26869.1 692 SCHVTYVCRTQGVTHGLAGYFESTLYAsrldedlspedrnKVEISTHPERIDRKSKDMISWFPIFFPLREPLSFPADTELEVSMWRQTDDSKVWYEWQV 790
                 ***************************77766665555555********************************************************** PP

                 EECSTTS-E........---BSGGGSS--E CS
     PRMT5_C 148 esfvylvlshvrvkvgvselhnvngraysi 177
                 e+ ++ v++++r++vg s l ++++ a+++
  CCE26869.1 791 EAWTW-VSASTRIRVGGSGLCSSRQLACLM 819
                 *****.55689*********9999988765 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.7e-05      0.13      96     143 ..     453     505 ..     442     531 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.7e-05
                 TT--TT-EEEETT.-TTTCC...HHHCCHHTT.SSEEEEEES-HHHHHHHHHH CS
      Met_10  96 klveegevVvdvf.AGiGpf...aipiakysk.akrvlaidlnPesvkylken 143
                 +  e+g vV+ v   G Gp+   a+ +a +++ +++v+a+++nP+++ yl + 
  CCE26869.1 453 TSSEDGAVVIAVAgSGRGPLvtrALKAAEFTQvKVQVWAVEKNPNAYVYLLRQ 505
                 556778888776424666763334556666553678************98543 PP

>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.018        64       9      45 ..      45      81 ..      41      91 .. 0.71
   2 ?    3.1   0.1     0.034   1.2e+02      27      78 ..     332     391 ..     325     398 .. 0.61
   3 ?    3.4   0.2     0.026        94      38      49 ..     531     543 ..     514     558 .. 0.54

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.018
     DUF3446  9 tsgsnslwaeellslvsglvgvanppsspssssssss 45
                t+++n  ++  ++ lvs+ +++  +++ +++s+ ++s
  CCE26869.1 45 TPVTNRHFKSRVFKLVSDHLSLLDQATEAPTSTLTAS 81
                56667789999******99999876655444433333 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.034
     DUF3446  27 lvgvan.ppss...psssssssssssssssspslscsvaaqqsselehiYs.....aaPtY 78 
                 ++++ n pp +    ++  ++ + ss++++s + + s+     ++++ +Y        P++
  CCE26869.1 332 ILSMDNrPPMTeedFPTLGAAHAHSSAAATSTTQGLSM-VRAGADAHIAYLqwlenQQPPF 391
                 56676634444333222445566677777778888888.5566677777754444455555 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.026
     DUF3446  38 ss.ssssssssss 49 
                 ss sssss+++ +
  CCE26869.1 531 SSaSSSSSTQTEA 543
                 2211111222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5931.96
//
Query:       CCE26870.1  [L=384]
Description: related to several transaminases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-23   82.5   0.0    3.7e-23   82.1   0.0    1.0  1  Aminotran_5    Aminotransferase class-V
    1.7e-06   27.5   0.0    6.8e-06   25.5   0.0    1.8  1  Aminotran_1_2  Aminotransferase class I and II
  ------ inclusion threshold ------
      0.017   15.0   0.0      0.043   13.7   0.0    1.7  1  DFP            DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   6.1e-27   3.7e-23       3     340 ..      10     341 ..       9     354 .. 0.86

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 6.1e-27
                  EBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGG.EEEESSHHH.HHHHHHHHCCCC-TTTSEEEEETTSH CS
  Aminotran_5   3 ldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseee.iiftsGtte.ainlvalslarslkpgdeivvteaeh 98 
                  l+ +++ +  ++Vl++++++          s +h g  + +++ ++ + +++l+++++      ++ G+++ +  +va +l   ++pg+ ++v ++++
   CCE26870.1  10 LMIPGPIEFDDAVLQSMSHF----------SESHVGPAFVSIFGDTLAMLRKLFQTTNPASqPFVINGSGTlGWDIVAVNL---VEPGEDVLVLSSGY 94 
                  56667777777788888887..........557888888999999999999999887654404445555556*********...************** PP

                  GGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHHH.T.T-EEEEE-TTTTTTS---HHHHTES CS
  Aminotran_5  99 hanlvpwqelakrtgakvkvipldeegeldldeleklln.ektklvaithvsnvtGtiqpveeigklakk.k.galvlvDaaqavghipidvkklgvD 193
                   +     ++   + gakv+ i+   + + +lde+ek+l+ +k+kl++ thv ++tG++++++ +++l+k+ + + l+++D++ +v   +i ++++g+D
   CCE26870.1  95 FGDA--FADCFAAYGAKVTTITGAVGSRPQLDEIEKALKeKKYKLITATHVDTSTGVLFELKPLTDLVKRvSpETLIIADGVCSVACEEIAFDDWGLD 190
                  ****..56666689************************8699****************************548************************* PP

                  EEEEETTT.TTSSTT-EEEEEEHHHHHTS.......SS.STTSEEEEET.TEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHH CS
  Aminotran_5 194 flafsghK.llgPtGiGvlyvrkellekl.....eplllggemveevsl.eettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekela 284
                   +   ++K +  PtG+++ +++ +++  +     ep+ +  +m +   + +++  a++ps f   Tp    i +l++a+  + +  l++  +++ e +
   CCE26870.1 191 GVITASQKaIGCPTGLSISMFSGRAIDVVknrktEPATYFASMKRWLPVmQNYE-AKKPSYFS--TPSPQLIRALHTAVSQVLARPLSERFQKHIEVS 285
                  ********6667******999999876554434488888888888888868888.788888**..*****************99************** PP

                  HHHHHHHCTSTTEEEES.-B-CTCBSEEEEEE.TTCSHHHHHHHHHHTTEEEEEE-T CS
  Aminotran_5 285 eyllerlkslpgvrlygpdkaerrasivsfnf.kgvhaedvatlLdeegIavrsGhh 340
                  +++++++++l+   ++  +++++ ++++++ + ++v+  d+   L ++gI   +G h
   CCE26870.1 286 DKVKKAVADLGLKVVAA-KREDQAHAMTAIYLpDSVSGPDLLPKLLNKGIIFAGGLH 341
                  **********9988855.799999*******98889999999888888**9999988 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.1e-09   6.8e-06      67     331 ..      60     335 ..      42     373 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.1e-09
                    GGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-..THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TT CS
  Aminotran_1_2  67 reaavvvgsGagaliealifllklnpgdeilvpdpty..asyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNP 160
                     +  v+ gsG+   + ++  l +  pg+++lv +  y  + + +++ ++g++v ++    + + +  l+++e+alke      k k+i  + +   
     CCE26870.1  60 SQPFVINGSGTLGWDIVAVNLVE--PGEDVLVLSSGYfgDAFADCFAAYGAKVTTIT--GAVGSRPQLDEIEKALKEK-----KYKLITATHVDTS 146
                    44468888888888888888885..7777777666665668****************..67999************94.....88*********** PP

                    T--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSG.GG-EEEEEEEH.................. CS
  Aminotran_1_2 161 tGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGla.GeRvGyilgna.................. 237
                    tG+++ l+ l++l++ +   + l++ D + ++ + +       +a+ + + + +i+ s  Ka G++ G+ + +++g a                  
     CCE26870.1 147 TGVLFELKPLTDLVKRVSP-ETLIIADGVCSVACEE-------IAFDDWGLDGVITAS-QKAIGCPtGLSISMFSGRAidvvknrktepatyfasm 233
                    *************888885.***************9.......999999999666666.5****96388888888888****************99 PP

                    ....HHHHHHHHHHHHHTS...SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEEC.....CSCSSEEEEEETHHCHHHHH CS
  Aminotran_1_2 238 ....avvsqlrklsrpfls...ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvla.....sqsgmflltdlsaetakels 321
                         v +  +    p ++   s +l +a+ +a+s +l +   l+e+ q++++ +++++++ a+lglkv+a     + ++m  + + +  +  +l 
     CCE26870.1 234 krwlPVMQNYEAK-KPSYFstpSPQLIRALHTAVSQVLAR--PLSERFQKHIEVSDKVKKAVADLGLKVVAakredQAHAMTAIYLPDSVSGPDLL 326
                    9876555555555.55555155555556666666666654..9**********************9999862222133667777666666777777 PP

                    HHHHHTCTEE CS
  Aminotran_1_2 322 kkLleevgvy 331
                     kLl++ g++
     CCE26870.1 327 PKLLNK-GII 335
                    777777.665 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.1e-06     0.043      27      58 ..      91     121 ..      88     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.1e-06
                 ---HHHHHHHHHHHHTT-EEEEEE-S-SS--- CS
         DFP  27 SSGkmGyalAeaaaarGaeVtlvsgpvsletp 58 
                 SSG  G a A+ +aa Ga+Vt ++g v  + p
  CCE26870.1  91 SSGYFGDAFADCFAAYGAKVTTITGAVGSR-P 121
                 9************************97422.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2731.49
//
Query:       CCE26871.1  [L=1077]
Description: probable nuclear export factor CRM1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.8e-126  421.0   3.7     9e-126  419.4   1.4    2.6  2  CRM1_C         CRM1 C terminal
    4.1e-38  130.8   5.8    4.1e-38  130.8   5.8    3.8  4  Xpo1           Exportin 1-like protein
    2.7e-33  113.4   4.0    7.8e-33  111.9   4.0    1.9  1  CRM1_repeat_2  CRM1 / Exportin repeat 2
    1.3e-27   95.6   1.5    1.3e-27   95.6   1.5    3.0  3  CRM1_repeat_3  CRM1 / Exportin repeat 3
    2.4e-19   68.6   2.5      7e-19   67.0   2.5    1.9  1  CRM1_repeat    Chromosome region maintenance or exportin repe
    1.2e-11   44.3   0.5      7e-11   41.9   0.0    2.7  2  IBN_N          Importin-beta N-terminal domain
    0.00048   19.7   0.1     0.0022   17.6   0.1    2.1  2  BID            BH3 interacting domain (BID)
  ------ inclusion threshold ------
      0.066   12.4   0.1       0.43    9.7   0.0    2.3  2  Hemocyanin_M   Hemocyanin, copper containing domain
      0.078   12.9   7.0       0.34   10.8   0.1    4.5  6  DUF3385        Domain of unknown function (DUF3385)
      0.087   12.9   0.5       0.72    9.9   0.0    2.8  3  FliH           Flagellar assembly protein FliH
       0.12   13.0   4.2        9.6    6.9   0.0    5.2  6  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
        0.4   10.9   3.2        7.7    6.8   0.0    3.8  3  Prolamin_like  Prolamin-like
       0.55   10.4   2.5        1.6    8.9   0.3    2.9  4  MIEAP          Mitochondria-eating protein


Domain annotation for each model (and alignments):
>> CRM1_C  CRM1 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.19   2.6e+02     132     157 ..     547     572 ..     535     591 .. 0.86
   2 !  419.4   1.4  6.5e-129    9e-126       1     320 [.     706    1034 ..     706    1035 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.19
      CRM1_C 132 eyPehrveFfellrainkkcfkallk 157
                 +yP + + ++++l+ +++k f+ +++
  CCE26871.1 547 QYPRFLKAHWKFLKTVVNKLFEFMHE 572
                 8********************99876 PP

  == domain 2  score: 419.4 bits;  conditional E-value: 6.5e-129
      CRM1_C    1 QlgkiyldllklyklvseliseavaaegeiatktpkvrllrtvkkeiLkLietyiekaedleevlnnlveplleavLvdYkknvpeardaevLsllt 97  
                  Q+g+iy+d+l++y+++s+liseava++ge+atk+pkvr+lrt+kkeiLkLiety+ekaedl+ + +++v+pll+ vLvdY++nv+ ardaevL+ +t
  CCE26871.1  706 QIGRIYHDMLEIYRATSTLISEAVARDGEVATKMPKVRGLRTIKKEILKLIETYLEKAEDLQGIRTQMVPPLLDCVLVDYNRNVAGARDAEVLKAMT 802 
                  9************************************************************************************************ PP

      CRM1_C   98 tlveklenlisdevpkileavfectldmikkdfeeyPehrveFfellrainkkcfkallklpseqfklvidsivwafkHterdvaetgLnillellk 194 
                  tl++kl++l++d+vp ile+vf+ tl+mi+++f++yPehrveFf+llr in +cf+allkl++++fk+vids+ wafkH++rdv+ +gL+++le+++
  CCE26871.1  803 TLINKLSALMEDQVPAILENVFDSTLSMINQNFSDYPEHRVEFFNLLRTINLHCFPALLKLENTRFKFVIDSCSWAFKHDNRDVEAAGLSMCLEVIT 899 
                  ************************************************************************************************* PP

      CRM1_C  195 nvee.kkkeaanqFyknyylsllkevlkvltDtdhksgfklqaelLaklirlvesg.....sikvpllee...eqvtsnkvflseyvvellsnaFpn 282 
                  n++e +++ +an+F++++++s+l++vl+v+tD+dhk+gfk+q++lL+kl++ ++       +i+ p++++   +++t nk++l+  v+++l+naF+n
  CCE26871.1  900 NIAEkTDAGTANNFFQRFFMSILQDVLFVITDNDHKAGFKTQSMLLMKLFYYAHPAdgtqpKIQGPIYTPdqaQAGTPNKDYLTTSVITVLRNAFSN 996 
                  **9978899*******************************************998856666788888877988899********************* PP

      CRM1_C  283 lsqkqveafvvglfelandlkkfkehlrDflislkefs 320 
                  l+ +qv++fv+g+++l+++ +kf+ hlrDfl+slkef 
  CCE26871.1  997 LQVSQVTTFVEGMLTLNTTYDKFRLHLRDFLVSLKEFV 1034
                  ************************************96 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   5.8     3e-41   4.1e-38       2     149 .]     104     248 ..     103     248 .. 0.98
   2 ?   -3.5   0.0         7   9.6e+03      80      96 ..     749     765 ..     743     781 .. 0.54
   3 ?   -1.0   0.1       1.2   1.7e+03      71      96 ..     807     836 ..     796     856 .. 0.43
   4 ?    1.1   0.1      0.26   3.6e+02      15      75 ..     993    1057 ..     979    1068 .. 0.74

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 3e-41
                 HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT.HHHHHHHHHHHHHHHHHHHTSHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
        Xpo1   2 kflrnklaealaelflqeypnnWpsffddllsllssspsglelllriLkvlpeEiadfsrskleqerrndlkdllrsnvqkilelllqileqsqskkqs 100
                 k l+nkl+++l+ l++qe+p+ Wpsf++++l ++++++s++e+++ +L++l+eE++d+s +k+++ +++ lk+++++++++i++++++il + +     
  CCE26871.1 104 KTLLNKLNLVLVSLLKQEWPHYWPSFINEILTSCHAGLSVCENNMIVLRLLSEEVFDYSAEKMTSTKTRSLKQTMCAEFSQIFQMCQSILATADL---- 198
                 679***************************************************************************************99997.... PP

                 HHHHHHHHHHHHHHTTTS-HHHHHTSCHHHHH.HHHCCSCCCHHHHHHHH CS
        Xpo1 101 selveavLkclsswvswidiglivnnpllnll.fqlLsdpelreaavecL 149
                 ++l++++L++l ++++wi++g+i++++l+++l  ++L  pe+r+ +++cL
  CCE26871.1 199 PSLIQETLETLLRFCNWIPLGYIFETDLIETLrTRFLAAPEFRNITLQCL 248
                 9*******************************9****************8 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7
                 HHHHHHHHHHHHHHHHH CS
        Xpo1  80 vqkilelllqileqsqs 96 
                  ++il+l++++le+ ++
  CCE26871.1 749 KKEILKLIETYLEKAED 765
                 34555555555555544 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.2
                 HHHHHHHHH....HHHHHHHHHHHHHHHHH CS
        Xpo1  71 dlkdllrsn....vqkilelllqileqsqs 96 
                 +l  l++++    ++ ++++ l++++q++s
  CCE26871.1 807 KLSALMEDQvpaiLENVFDSTLSMINQNFS 836
                 333444444111122222222222222222 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.26
                  HHHHHTTTTSTTHHHHHHHHHCT.HHHHHHHHHHHHHHHHHHHT....SHTTTSCHHHHHHHHHH CS
        Xpo1   15 lflqeypnnWpsffddllsllssspsglelllriLkvlpeEiad....fsrskleqerrndlkdl 75  
                   f ++ +++  +f++ +l l ++ ++    l  +L +l+e ++d    f+++k++qer+ +l d 
  CCE26871.1  993 AFSNLQVSQVTTFVEGMLTLNTTYDKFRLHLRDFLVSLKEFVGDnaelFQEEKEQQEREAKLADK 1057
                  555555667777778888777777777777788999999999999999999*****998888776 PP

>> CRM1_repeat_2  CRM1 / Exportin repeat 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   4.0   5.7e-36   7.8e-33       1      68 []     402     469 ..     402     469 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 5.7e-36
  CRM1_repeat_2   1 rkqlYkeiLsqlrlvlierMakPeEVliveneeGeivretvkdtdtialYktmretLvyLthLdvedt 68 
                    rk+ Y+eiLs+lrlv+ie+M++PeEVl+ven+eGeivre+vk++dt++lYkt+re+LvyLthLdv dt
     CCE26871.1 402 RKNTYNEILSNLRLVMIEKMVRPEEVLVVENDEGEIVREFVKESDTVQLYKTIRECLVYLTHLDVVDT 469
                    6899*************************************************************997 PP

>> CRM1_repeat_3  CRM1 / Exportin repeat 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   1.5   9.6e-31   1.3e-27       1      51 []     482     532 ..     482     532 .. 0.99
   2 ?   -2.7   0.0       4.9   6.7e+03      31      46 ..     557     572 ..     556     575 .. 0.82
   3 ?   -1.8   0.0       2.6   3.5e+03      31      41 ..     916     926 ..     915     935 .. 0.82

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 9.6e-31
  CRM1_repeat_3   1 dgseWswnnlnkLCWAiGSISgamseedEkrfLvtvikdLLnLceekrgkd 51 
                    dgseWswnn+n LCWAiGSIS am+ee+EkrfLvtvikdLL L+e+krgkd
     CCE26871.1 482 DGSEWSWNNCNVLCWAIGSISLAMNEETEKRFLVTVIKDLLGLTEMKRGKD 532
                    79***********************************************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.9
  CRM1_repeat_3  31 rfLvtvikdLLnLcee 46 
                    +fL tv+++L++++ e
     CCE26871.1 557 KFLKTVVNKLFEFMHE 572
                    6999*****9998765 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.6
  CRM1_repeat_3  31 rfLvtvikdLL 41 
                    rf++++++d L
     CCE26871.1 916 RFFMSILQDVL 926
                    9*******988 PP

>> CRM1_repeat  Chromosome region maintenance or exportin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   2.5   5.1e-22     7e-19       2      37 .]     331     366 ..     330     366 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 5.1e-22
                  HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH CS
  CRM1_repeat   2 allaalqYLvkISeVedrEiFKICLEYWnkLvseLY 37 
                  +l++++ YL++IS ++drEiFKICL+YW kLv+eLY
   CCE26871.1 331 YLMHGHYYLIRISSIDDREIFKICLDYWLKLVQELY 366
                  79*********************************9 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0     5e-14     7e-11       1      73 [.      26      91 ..      26      92 .. 0.96
   2 ?   -2.9   0.1       4.7   6.5e+03      10      28 ..     179     199 ..     172     201 .. 0.74

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 5e-14
                HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnllg 73
                A+ +L+q+++ p++++++  il++ + + ++++l++++L n i  +W+       +p ++   +rn++++ ++
  CCE26871.1 26 AQIALNQFKEDPNSWLLVDAILTTAKYP-QTKYLGLQVLDNVIMTRWK------VIPRDQCLGVRNFIVQFIL 91
                6779************************.*******************......***************9986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.7
                 C..STCHHHHHHHHHHCTTSH CS
       IBN_N  10 k..qpgflsallqilansese 28 
                    + + ++ +++ila+ +++
  CCE26871.1 179 CaeFSQIFQMCQSILATADLP 199
                 3447889999****9998876 PP

>> BID  BH3 interacting domain (BID)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.7   5.1e+03      68      92 ..     256     280 ..     251     294 .. 0.70
   2 !   17.6   0.1   1.6e-06    0.0022     138     184 ..     792     838 ..     781     844 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.7
                 TT-STTS-HCHHHHHHHHHHHHHHH CS
         BID  68 agrleadsesqeevirniarqLaqi 92 
                 +g + + ++ qe++++ + + L  i
  CCE26871.1 256 TGGTAQSAQYQEQIVKMFTETLGTI 280
                 4555566677788887777777766 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.6e-06
                 --SSHCHHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHCCCHHH CS
         BID 138 pkDlekekamLvltmlLakkvadhtPsLlrdvfrttvnfinqnllty 184
                 ++D e  kam  l+  L+  + d++P++l++vf++t  +inqn+ +y
  CCE26871.1 792 ARDAEVLKAMTTLINKLSALMEDQVPAILENVFDSTLSMINQNFSDY 838
                 57888889999999999999************************999 PP

>> Hemocyanin_M  Hemocyanin, copper containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00031      0.43     194     233 ..     675     717 ..     637     730 .. 0.87
   2 ?   -1.0   0.0      0.57   7.8e+02     200     242 ..     894     937 ..     861     948 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00031
                   ETTSCHHHHHHHHHHHT-GG...SB--TTS--HHHHHHHHHCT CS
  Hemocyanin_M 194 dLrkpegieilgnilegnvd...sidkkfygslevlarkllgd 233
                    L++ e i+i+gni++ nv    s+ + fy ++  +++++l  
    CCE26871.1 675 FLQNAETIKIIGNIMKTNVAactSVGPYFYPQIGRIYHDMLEI 717
                   58999*************986668889***********99865 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.57
                   HHHHHHHHHHT-GGSB--TTS--HHH.HHHHHHCT----SBTTB CS
  Hemocyanin_M 200 gieilgnilegnvdsidkkfygslev.larkllgdaeepddkyk 242
                    +e++ ni e +     ++f++ + + + +++l  ++++d+k  
    CCE26871.1 894 CLEVITNIAEKTDAGTANNFFQRFFMsILQDVLFVITDNDHKAG 937
                   5899********99888888887655156667777767666655 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.6   2.2e+03     121     154 ..      78     111 ..      35     119 .. 0.64
   2 ?   -3.6   0.0       6.5   8.9e+03       7      33 ..     181     207 ..     167     209 .. 0.76
   3 ?   -3.1   0.0       4.8   6.6e+03      24      42 ..     237     255 ..     225     290 .. 0.65
   4 ?   10.8   0.1   0.00025      0.34      73     150 ..     503     582 ..     442     592 .. 0.83
   5 ?    2.6   0.0     0.085   1.2e+02      95     139 ..     670     720 ..     598     730 .. 0.70
   6 ?   -3.2   0.0       5.1     7e+03      80     122 ..     979    1001 ..     972    1016 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.6
     DUF3385 121 kcvpfLdqiipallsvirtteesnlrefllqqLa 154
                 +c+ + + i++ +l++ +t e+ + +++ll++L+
  CCE26871.1  78 QCLGVRNFIVQFILHTAKTEESLRTNKTLLNKLN 111
                 4555556677777777777777777777777775 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.5
     DUF3385   7 eypqLLelLlnilkteqsqsirrevik 33 
                 e+ q++++ ++il t +  s+ +e++ 
  CCE26871.1 181 EFSQIFQMCQSILATADLPSLIQETLE 207
                 566778888888888888888888775 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4.8
     DUF3385  24 sqsirrevikllGilGALD 42 
                   + r+ ++++l+ +G L 
  CCE26871.1 237 APEFRNITLQCLTEIGGLQ 255
                 6677777777777777664 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00025
     DUF3385  73 vglspsneeyyptvvinaLlrilkdpslsshhaavveaimnifkt..lglkc.vpfLdqiipallsvirtteesnlrefll 150
                   + + +e  +  +vi+ Ll + + +  ++++a v + im+i+ +    lk   +fL+ ++++l++ +++++e  ++++  
  CCE26871.1 503 LAMNEETEKRFLVTVIKDLLGLTEMKRGKDNKAVVASNIMYIVGQypRFLKAhWKFLKTVVNKLFEFMHESHE-GVQDMAC 582
                 44566779999999*****************************984433555588**************9988.7776655 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.085
     DUF3385  95 lkdpslsshhaavveaimnifktlglkcvp.......fLdqiipallsvirt 139
                  kdps   + a++++ i ni+kt    c++        + +i +++l++ r 
  CCE26871.1 670 AKDPSFL-QNAETIKIIGNIMKTNVAACTSvgpyfypQIGRIYHDMLEIYRA 720
                 5888877.688999********988888876666444455555556655554 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 5.1
     DUF3385   80 eeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkc 122 
                  ++y  t vi+ L + +++ ++s                    +
  CCE26871.1  979 KDYLTTSVITVLRNAFSNLQVS--------------------Q 1001
                  5566666666555555444443....................3 PP

>> FliH  Flagellar assembly protein FliH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.4     2e+03      48      88 ..     405     444 ..     400     457 .. 0.77
   2 ?    9.9   0.0   0.00052      0.72       9      99 ..     561     652 ..     553     660 .. 0.82
   3 ?   -2.9   0.0       4.7   6.5e+03      44      65 ..     744     764 ..     734     781 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
                 -HHHHHHHHHHHHTTSCHHHS-EEEEE-HHHHHHHHHHHHH CS
        FliH  48 dpekilalvrealaklpvdekkitlrvnpdDlelvrehlge 88 
                   ++il+++r ++  + + +++ +l v  d+ e+vre ++e
  CCE26871.1 405 TYNEILSNLRLVM-IEKMVRPEEVLVVENDEGEIVREFVKE 444
                 5678999999999.555566666788999999999998774 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00052
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S-HHHHHHHHHHHHTTSCHHHS-EEEEE-HHHHHHHHHHHHHHHHHCT-.....EEEE CS
        FliH   9 alleelenslaeldeeledqlvqlaldiarkvikkelsvdpekilalvrealaklpvdekkitlrvnpdDlelvrehlgeelsargw.....rlva 99 
                  ++++l + + e  e ++d+ +++ ++iar++ ++ ++ +p++ ++ + e++       +kit+ ++p+ +    e+ g   +a+g+     rl++
  CCE26871.1 561 TVVNKLFEFMHESHEGVQDMACDTFIKIARQCRRHFVALQPSEKEPFIDEIV----RVMGKITVDLSPQQVHTFYEACGYMVAAQGNkhqqeRLLS 652
                 55566666667778889***********************************....56689********999999999988888887555555555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.7
                 S--S-HHHHHHHHHHHHTTSCH CS
        FliH  44 elsvdpekilalvrealaklpv 65 
                  l++ +++il+l+++ l +++ 
  CCE26871.1 744 GLRTIKKEILKLIETYL-EKAE 764
                 57777889999999998.4444 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.62   8.5e+02      46      81 ..     161     197 ..     149     212 .. 0.73
   2 ?   -2.9   0.0       7.8   1.1e+04      54      76 ..     350     372 ..     349     378 .. 0.84
   3 ?    6.9   0.0     0.007       9.6      23      64 ..     557     598 ..     550     630 .. 0.82
   4 ?   -1.1   0.0       2.2   3.1e+03      53      81 ..     788     816 ..     759     837 .. 0.72
   5 ?   -2.7   0.0       6.8   9.3e+03      21      29 ..     820     828 ..     797     863 .. 0.58
   6 ?    1.0   0.0      0.48   6.6e+02      21      45 ..     914     938 ..     897     947 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.62
  Vac14_Fab1_bd  46 yacEslyni.akvakgevlkllneifdalvklvaDsd 81 
                    y++E +  + ++ +k+++   +++if++  +++a +d
     CCE26871.1 161 YSAEKMTSTkTRSLKQTMCAEFSQIFQMCQSILATAD 197
                    56666665525778999999*******9999876554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.8
  Vac14_Fab1_bd  54 iakvakgevlkllneifdalvkl 76 
                    i k++ +  lkl++e+++ + +l
     CCE26871.1 350 IFKICLDYWLKLVQELYEEMQQL 372
                    789999999999****9999887 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.007
  Vac14_Fab1_bd  23 eyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlk 64 
                    ++l+++v+ +++ ++++ + v   ac+++  ia++++ +++ 
     CCE26871.1 557 KFLKTVVNKLFEFMHESHEGVQDMACDTFIKIARQCRRHFVA 598
                    799**********************************99875 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 2.2
  Vac14_Fab1_bd  53 niakvakgevlkllneifdalvklvaDsd 81 
                    n+a +   evlk ++++ + l+ l+ D+ 
     CCE26871.1 788 NVAGARDAEVLKAMTTLINKLSALMEDQV 816
                    45555555666666666666666666654 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 6.8
  Vac14_Fab1_bd  21 ikeyleeiv 29 
                    +++++++ +
     CCE26871.1 820 LENVFDSTL 828
                    233333333 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.48
  Vac14_Fab1_bd  21 ikeyleeivkpvlkcfsDkdsrvRy 45 
                     ++++ +i++ vl +++D+d++  +
     CCE26871.1 914 FQRFFMSILQDVLFVITDNDHKAGF 938
                    6889999*************99765 PP

>> Prolamin_like  Prolamin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.57   7.9e+02      20      49 ..     166     196 ..     144     213 .. 0.72
   2 ?    6.8   0.0    0.0056       7.7      14      53 ..     564     603 ..     557     615 .. 0.79
   3 ?    0.8   0.0      0.41   5.7e+02      35      57 ..     849     870 ..     847     883 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.57
  Prolamin_like  20 ilknkes....vsreCCqallkigkeCwpallkl 49 
                    +++   +    +++  C ++ +i + C + l++ 
     CCE26871.1 166 MTS---TktrsLKQTMCAEFSQIFQMCQSILATA 196
                    333...1334599999***********9988876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0056
  Prolamin_like  14 deilksilknkesvsreCCqallkigkeCwpallkllvft 53 
                    ++ ++++ ++ e v++  C  + ki ++C ++++ l++++
     CCE26871.1 564 NKLFEFMHESHEGVQDMACDTFIKIARQCRRHFVALQPSE 603
                    4556666654436********************9998766 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.41
  Prolamin_like  35 llkigkeCwpallkllvftlpql 57 
                    l++i+ +C+pallkl+  t  ++
     CCE26871.1 849 LRTINLHCFPALLKLE-NTRFKF 870
                    678999********94.554444 PP

>> MIEAP  Mitochondria-eating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.3    0.0011       1.6      36     143 ..      86     214 ..      76     221 .. 0.90
   2 ?   -2.0   0.0       2.5   3.4e+03      89     143 ..     590     620 ..     521     637 .. 0.53
   3 ?   -3.2   0.0       5.9   8.2e+03      32      72 ..     768     810 ..     749     866 .. 0.57
   4 ?   -2.0   0.0       2.6   3.6e+03      67     122 ..     966    1020 ..     958    1040 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
       MIEAP  36 lvqkilfilvv.lsfrvakealrslkervrkllstssadgsetke....................lssleeavsdylrkeadlydvksiveevisellk 113
                 +vq il++++  +s r+ k  l++l   +  ll++++ +   +                      l+ l e+v dy ++++++++ +s++++++ e  +
  CCE26871.1  86 IVQFILHTAKTeESLRTNKTLLNKLNLVLVSLLKQEWPHYWPSFIneiltschaglsvcennmivLRLLSEEVFDYSAEKMTSTKTRSLKQTMCAEFSQ 184
                 688899999966999999999999999999999999888877444889999999999999*************************************** PP

       MIEAP 114 tlkekpslkqekelesYirecvelaWamvv 143
                  ++  +s+ + ++l s i+e++e   ++++
  CCE26871.1 185 IFQMCQSILATADLPSLIQETLETLLRFCN 214
                 *********************999888876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.5
       MIEAP  89 dylrkeadlydvksiveevisellktlkekpslkqekelesYirecvelaWamvv 143
                 ++ r                         +  l++ +e e++i+e+v+++ +++v
  CCE26871.1 590 RQCR-----------------------RHFVALQP-SEKEPFIDEIVRVMGKITV 620
                 2222.......................22222222.4555555555555544444 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.9
       MIEAP  32 r.ddelvqkilfilvv.lsfrvakealrslkervrkllstssa 72 
                    +++v  +l +++v + ++va     ++ +++++l+++ sa
  CCE26871.1 768 GiRTQMVPPLLDCVLVdYNRNVAGARDAEVLKAMTTLINKLSA 810
                 4556666666666666555555555544554444444444333 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2.6
       MIEAP   67 lstssadgsetkelssleeavsdylrkeadlydvksiveevisellktlkekpslk 122 
                  + t++++++ t + + l++ v   lr ++++ +v++++ ++++ +l   + +++++
  CCE26871.1  966 IYTPDQAQAGTPNKDYLTTSVITVLRNAFSNLQVSQVT-TFVEGMLTLNTTYDKFR 1020
                  55666666666678999999999999999999987655.56676666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1077 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.50
# Mc/sec: 6480.31
//
Query:       CCE26872.1  [L=634]
Description: related to RNA helicase SPB4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-36  123.3   0.0    1.7e-35  122.4   0.0    1.5  1  DEAD        DEAD/DEAH box helicase
    1.1e-22   80.5   0.0      4e-22   78.6   0.0    2.0  2  Helicase_C  Helicase conserved C-terminal domain
    1.6e-21   76.3   0.1      3e-21   75.4   0.1    1.5  1  DUF4217     Domain of unknown function (DUF4217)
    0.00044   20.3   0.1     0.0024   17.9   0.0    2.0  2  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.0   3.8e-39   1.7e-35       1     175 [.      39     235 ..      39     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 3.8e-39
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS-EEEEEESSHHHHHHHHHHHHHHTT..........TST........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxx........... RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...kgktgpkalivePtreLaeqtlnnlkkfkk..........yid........... 75 
                 t++Qa+++p+++g++dv+v+a TGsGKT+afl+p++q++++    ++++   a+i++PtreLa q+++ l ++++          y             
  CCE26872.1  39 TPVQAATMPHFMGNKDVVVEAVTGSGKTMAFLLPIVQRILRLdepTKRHDVAAIIISPTRELAAQIHTVLMSLLEfhppsadiisY-Lkdderrpttta 136
                 89*************************************999998899999************************77776665552.057777887788 PP

                 ..SEEEEEETTSSHHHH.HHHH.HTTCSEEEEEHHHHHHHHHCTSSH..CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESS CS
                 ..xxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  76 ..lrvlliiggvaardq.lskl.dngvdivvgtpgrlddllstgkln..lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSAT 168
                   +  +l++gg++++ q l+ + +++++++++ pgrl++lls+ +++   s++++lVlDEadrlld gf++++++i++ql       ++qr++ ++SA 
  CCE26872.1 137 pvIVPQLLVGGTTTTAQdLQFFtRHSPNVLISSPGRLVELLSSPQVHcpQSSFEMLVLDEADRLLDLGFKQDLQAIIAQL-------PKQRRTGLFSAS 228
                 86555577887776544044442455***************76665533777788*************************.......78999******* PP

                 BSHHHHH CS
                 xxxxxxx RF
        DEAD 169 lpkdvkk 175
                 +++ v++
  CCE26872.1 229 VSEAVSE 235
                 9988876 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0     9e-26     4e-22       4     111 .]     282     394 ..     279     394 .. 0.84
   2 ?   -3.4   0.0       2.7   1.2e+04      49      67 ..     527     545 ..     521     546 .. 0.80

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 9e-26
                 HHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHT......TSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEEESGGGTSSSTSTTESEEEESSS CS
  Helicase_C   4 eallell.kleeeggkilifvntidrlek.vklllekk......gikvavlhgelpqnereeileqfnkgesd.vLiatdvaerGidipkvnlVinfdl 93 
                  al +ll  l    +++++f+ t+  ++   ++           g++ ++lhg+lp++ r++ +++f    s  vL++td a+rG+dip+v+lV+++d+
  CCE26872.1 282 PALAQLLeRLPITPQRTIVFLSTCAAVDYlQHV----LpdllptGFSLVPLHGKLPAKVRQKNFARFLGSVSPtVLVTTDLAARGLDIPQVDLVVQIDA 376
                 556666666677889**********99654222....1233566***********************7555557************************* PP

                 SSSHHHHHHHHTTSSSTT CS
  Helicase_C  94 prnvtsyiqriGRtgRag 111
                 p +++ +i+r+GR+gRag
  CCE26872.1 377 PSDPKVFIHRSGRAGRAG 394
                 ****************97 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.7
                 TSTHHHHHHHHHHHHTTSS CS
  Helicase_C  49 elpqnereeileqfnkges 67 
                 ++  + r+e+le+ ++ge+
  CCE26872.1 527 KTREKARLEALEALRNGEV 545
                 5778999999999999985 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.1   6.7e-25     3e-21       3      61 .]     442     500 ..     440     500 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 6.7e-25
     DUF4217   3 qkleslcakdrdlkelAqkAfvsyvraYsvhlakeiFrvkkLdlealAksfGLleaPki 61 
                 +k++++ ++dr+++++AqkAfvs+vr+Y+ h+a++iFr  +Ld+++lA+++GLl++P++
  CCE26872.1 442 EKMRAFAKTDRAIYDKAQKAFVSWVRSYAAHQATSIFRTADLDWADLARAWGLLRMPRM 500
                 799*******************************************************9 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.4e-07    0.0024      22     155 ..      50     214 ..      19     229 .. 0.71
   2 ?   -2.1   1.3      0.73   3.3e+03      96     118 ..     569     601 ..     525     620 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.4e-07
                 .TTSEEEEEESTTSTHHHHH.HHHHHHH-S...........-EEEEESSHHHHHHHHHHGGGGTGG......GEEEESSS-B--............... CS
      ResIII  22 krdkrglikmaTGtGKTlva.aklierllkkgkee......kflflvprkslleqtleefkkflseayke..igkkvsgdkkka.............ke 98 
                  ++k +++++ TG+GKT+   + +++r+l+  +e        ++++ p+++l  q  + ++++l+ +  +  i   +++d++++               
  CCE26872.1  50 MGNKDVVVEAVTGSGKTMAFlLPIVQRILRL-DEPtkrhdvAAIIISPTRELAAQIHTVLMSLLEFHPPSadIISYLKDDERRPtttapvivpqllvGG 147
                 5789999***********9966677776654.333467788****************776555544432222666666666666777788888887755 PP

                 .....-SEEEEEHHHHHHTH...............HHHTTT-SEEEEETGGGTTS....TTTHHHHH CS
      ResIII  99 kdstnkkilvttiqsldadseee.......eeeseellrdrfdviiiDEaHrlgak...kswreile 155
                   +t  ++ ++t +s +  +++        ++ + +  +++f++++ DEa rl +    +  ++i+ 
  CCE26872.1 148 TTTTAQDLQFFTRHSPNVLISSPgrlvellSSPQVHCPQSSFEMLVLDEADRLLDLgfkQDLQAIIA 214
                 5566666666666666666644466777778888889999999999999999877433335555555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.73
                 -.................-SEEEEEHHHHHHTH CS
      ResIII  96 a..........kekdstnkkilvttiqsldads 118
                            ++k++ +++ ++t++++l +++
  CCE26872.1 569 DeqrverrekrHKKKDAERNATMTEEERLEKEK 601
                 122233333334666667777777887777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1908  (0.10642); expected 358.6 (0.02)
Passed bias filter:                      756  (0.0421663); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.48
# Mc/sec: 3979.68
//
Query:       CCE26873.1  [L=413]
Description: uncharacterized protein CPUR_00342 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.28    9.9   1.8       0.38    9.5   1.8    1.1  1  Presenilin      Presenilin
       0.85    8.6   7.3        1.2    8.1   7.3    1.1  1  LAP1C           Lamina-associated polypeptide 1C (LAP1C)
        6.6    5.5   8.5        8.5    5.1   8.5    1.1  1  Apt1            Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.8   6.3e-05      0.38     233     308 ..      45     132 ..      18     199 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 6.3e-05
  Presenilin 233 aeseeeeeaekkkeeasesskeeeseeesseksaqsse........................seeeseeesseaessaeesseekeseessesseeeee 307
                 ++ ++++ +++ +e +++++++++             +                        s +++++++++++++++++ ++++++++++ ++++++
  CCE26873.1  45 TMLSQQSLEKSVEEDEEQEEDNDSL------------SgddppgaarksrtrsrspidpprrSARKTRSTNNNNNTNPSTHPSTSRKAPTEKMKTSTHD 131
                 1111111111111111111111111............12233333333334444555555432222222222222222222222222222222222222 PP

  Presenilin 308 e 308
                 +
  CCE26873.1 132 K 132
                 2 PP

>> LAP1C  Lamina-associated polypeptide 1C (LAP1C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.3    0.0002       1.2      28     145 ..      18     133 ..       7     150 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0002
                 XXXXXXXXXXX................XXXXXXXXXXXXXX..XXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXX.....XXXXXXXXX CS
       LAP1C  28 trkplsslkkdhqevetigsesadtedkseseqevnlseepkdetEeedsessqsgeeghklsseslgeekldsedsvsssdktg.....radaqlees 121
                  ++p+ s +++h e+ +  + sa   d+  s+q  + s e+++e+Ee++++ s ++  g   +s+  +++++d+   +  + +++      + +++ + 
  CCE26873.1  18 SPSPAPSEQRHHAEYAAPRTRSAARRDTMLSQQSLEKSVEEDEEQEEDNDSLSGDDPPGAARKSRTRSRSPIDPPRRSARKTRSTnnnnnTNPSTHPST 116
                 567888999999999999999************999999998888888888888888888888888888888776655555554411111233333333 PP

                 XXXXXXXX.XXXXXXXXXXX.... CS
       LAP1C 122 saalseeasdrtaasqepsaadsq 145
                 s + ++e+ +++++++        
  CCE26873.1 117 SRKAPTEKMKTSTHDK-------A 133
                 4444444433333333.......2 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   8.5    0.0014       8.5     294     388 ..      32     128 ..      24     178 .. 0.49

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0014
        Apt1 294 YiFPkrdsdaqeasmvkess....seeddesdeesessssss.....ssssssassssssssrssslelrlk.ptsstssssssessssssskkrssee 382
                 Y  P ++s a +++m+ ++s     eed+e++e+++s s         ++s+++s+s  +  r+s+ + r++ ++++t+ s+++++s+     k+ +e 
  CCE26873.1  32 YAAPRTRSAARRDTMLSQQSleksVEEDEEQEEDNDSLSG-DdppgaARKSRTRSRSPIDPPRRSARKTRSTnNNNNTNPSTHPSTSR-----KAPTE- 123
                 5555555555555322222233433333333333333222.14666633333344444444444443333111112222222222222.....22222. PP

        Apt1 383 ssless 388
                  ++++s
  CCE26873.1 124 -KMKTS 128
                 .12211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1163  (0.064867); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 3010.58
//
Query:       CCE26874.1  [L=187]
Description: uncharacterized protein CPUR_00343 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-31  108.2   0.4    2.8e-31  107.6   0.4    1.3  1  KxDL        Uncharacterized conserved protein


Domain annotation for each model (and alignments):
>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.4   1.5e-35   2.8e-31       1      86 []      88     173 ..      88     173 .. 0.99

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 1.5e-35
        KxDL   1 rltsavdsedldeilalQaqtsgrlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkaklakkyPeeY 86 
                 r+++++++++ld+++a+Qaqtsg ln+k+reLlel++++q+rlak+r+rf++g ++++ev+ dLe+++kk+++l+ak+++k+P+eY
  CCE26874.1  88 RFSNSFNPIPLDRSVAVQAQTSGLLNAKHRELLELQKQAQARLAKTRQRFRDGLRDAREVRGDLEWTQKKVSTLQAKASRKHPNEY 173
                 799**********************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1520.83
//
Query:       CCE26875.1  [L=181]
Description: uncharacterized protein CPUR_00344 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1544.25
//
Query:       CCE26876.1  [L=201]
Description: uncharacterized protein CPUR_00345 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1542.74
//
Query:       CCE26877.1  [L=341]
Description: uncharacterized protein CPUR_00346 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-08   34.6   2.6    1.5e-08   34.6   2.6    4.1  3  Cir_N     N-terminal domain of CBF1 interacting co-repressor 


Domain annotation for each model (and alignments):
>> Cir_N  N-terminal domain of CBF1 interacting co-repressor CIR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   2.6   8.6e-13   1.5e-08       1      37 []      10      46 ..      10      46 .. 0.98
   2 ?   -2.5   2.2      0.34     6e+03      17      26 ..     150     159 ..     142     162 .. 0.55
   3 ?   -5.2   9.9         1   1.8e+04      21      31 ..     236     246 ..     231     266 .. 0.67

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 8.6e-13
                SS-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Cir_N  1 SWHPgllkNqerVWkaEqkaleEkkkieerkkeieeE 37
                SW++ + +N++rV+++E++a++ ++ +e+r++ei+ E
  CCE26877.1 10 SWNVYNADNVARVRRDEAAAKAAEEAEEQRMQEIDAE 46
                9*********************************988 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.34
                 HHHHHHHHHH CS
       Cir_N  17 EqkaleEkkk 26 
                 E + +++kkk
  CCE26877.1 150 EVEREAKKKK 159
                 3333444444 PP

  == domain 3  score: -5.2 bits;  conditional E-value: 1
                 HHHHHHHHHHH CS
       Cir_N  21 leEkkkieerk 31 
                 ++E++ki+e +
  CCE26877.1 236 KQERRKIQEER 246
                 55555555533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1537  (0.085727); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 2435.48
//
Query:       CCE26878.1  [L=854]
Description: probable vesicular fusion ATPase, NsfA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-53  179.2   0.0    8.9e-39  132.9   0.0    2.9  3  AAA              ATPase family associated with various cellul
    1.8e-11   44.5   0.1    0.00019   21.7   0.0    3.8  2  AAA_22           AAA domain
    1.6e-10   40.6   0.0    2.6e-09   36.7   0.0    2.4  2  AAA_lid_3        AAA+ lid domain
    5.1e-10   40.0   0.0     0.0012   19.3   0.0    3.0  2  AAA_16           AAA ATPase domain
      7e-10   39.0   0.0     0.0011   18.9   0.0    2.7  2  AAA_5            AAA domain (dynein-related subfamily)
    1.9e-07   31.3   0.0    0.00011   22.4   0.0    2.7  2  AAA_2            AAA domain (Cdc48 subfamily)
    2.4e-07   30.3   0.0      0.021   14.0   0.0    2.2  2  TIP49            TIP49 P-loop domain
    3.3e-07   30.9   0.0      0.088   13.4   0.0    3.2  3  AAA_18           AAA domain
    5.7e-07   29.4   0.1       0.05   13.3   0.0    2.9  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    9.5e-07   29.1   0.0      0.042   14.0   0.0    2.6  2  AAA_33           AAA domain
    9.7e-07   28.4   0.3     0.0047   16.3   0.1    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    8.2e-06   26.2   0.0       0.08   13.3   0.0    2.6  2  RNA_helicase     RNA helicase
    1.2e-05   25.4   0.0       0.12   12.5   0.0    2.5  2  AAA_14           AAA domain
    1.3e-05   24.9   0.0      3e-05   23.7   0.0    1.6  1  CDC48_2          Cell division protein 48 (CDC48), domain 2
    3.7e-05   23.5   0.0       0.23   11.2   0.0    2.5  2  IstB_IS21        IstB-like ATP binding protein
      6e-05   22.8   0.0      0.036   13.8   0.0    2.5  2  AAA_24           AAA domain
    0.00015   21.8   0.0        0.6   10.1   0.0    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00015   21.4   0.0       0.23   11.0   0.0    2.9  2  AAA_25           AAA domain
    0.00017   21.1   0.2       0.05   13.1   0.0    2.7  2  AAA_7            P-loop containing dynein motor region
    0.00019   21.7   0.0       0.42   10.8   0.0    2.4  2  AAA_28           AAA domain
     0.0003   20.0   0.1       0.98    8.4   0.0    3.0  3  Parvo_NS1        Parvovirus non-structural protein NS1
    0.00036   20.5   1.0        8.8    6.2   0.0    4.0  4  ATPase_2         ATPase domain predominantly from Archaea
    0.00071   19.4   0.0       0.71    9.6   0.0    2.3  2  AAA_11           AAA domain
    0.00071   20.1   0.1       0.17   12.4   0.1    2.7  2  ABC_tran         ABC transporter
    0.00086   19.3   0.2       0.59   10.0   0.0    3.1  3  NACHT            NACHT domain
     0.0017   18.1   0.1       0.55   10.0   0.0    3.7  4  DEAD             DEAD/DEAH box helicase
     0.0026   17.1   0.0          2    7.6   0.1    2.6  2  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0028   17.4   0.0        1.9    8.2   0.0    2.7  2  Sigma54_activat  Sigma-54 interaction domain
     0.0031   16.8   0.2          3    6.9   0.1    3.1  3  NB-ARC           NB-ARC domain
     0.0031   17.3   0.1       0.56    9.9   0.0    2.5  2  AAA_30           AAA domain
     0.0032   16.9   1.1       0.24   10.7   0.2    3.0  3  ATPase           KaiC
     0.0056   17.1   0.0        2.8    8.4   0.0    2.6  2  AAA_17           AAA domain
     0.0086   16.4   0.0        1.3    9.4   0.0    3.1  3  AAA_19           AAA domain
     0.0097   15.8   0.0       0.93    9.4   0.0    2.4  2  AAA_3            ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.011   15.2   0.1        3.4    7.1   0.0    2.3  2  PhoH             PhoH-like protein
      0.017   15.1   0.0         12    5.9   0.1    2.7  2  ResIII           Type III restriction enzyme, res subunit
      0.039   14.5   0.0        1.3    9.5   0.0    2.4  2  AAA_23           AAA domain
      0.086   12.2   0.1        5.7    6.3   0.0    3.2  3  TniB             Bacterial TniB protein
       0.12   12.2   0.0        3.9    7.4   0.0    2.7  2  Rad17            Rad17 P-loop domain
       0.15   11.8   0.0        1.5    8.5   0.0    2.3  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.0     2e-41   8.9e-39       1     131 [.     359     500 ..     359     501 .. 0.93
   2 !   42.9   0.0   1.3e-13     6e-11       1     112 [.     640     751 ..     640     770 .. 0.83
   3 ?   -0.7   0.0         4   1.8e+03      55      87 ..     764     798 ..     755     813 .. 0.63

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 2e-41
                 EEEESSTTSSHHHHHHHHHHHHT.HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHH...TTCCCHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg.vefleisgsellskyvgesekkirelfkeakeka.......kpsilfiDEidalaksr...sgseseeeervvnq 88 
                 +llyGppGtGKTl+a+++ k l+ ++   i+g+e+l+kyvg+se++ir+lf++a+++        + +i+++DE+da++k+r    g+ ++++++vvnq
  CCE26878.1 359 LLLYGPPGTGKTLIARQIGKMLNaRPPKVINGPEVLNKYVGQSEENIRKLFADAEKEYkekgdesSLHIIIFDELDAICKQRgsgAGGGTGVGDSVVNQ 457
                 69********************945569**************************7766788899666****************888889********** PP

                 HHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  89 Llteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 Ll++ldgv++  +++++ig+tnr d++d+al+r gR++ ++e++
  CCE26878.1 458 LLSKLDGVDQL-NNILLIGMTNRKDMIDEALMRpGRLETHVEVS 500
                 **********7.66**************************9986 PP

  == domain 2  score: 42.9 bits;  conditional E-value: 1.3e-13
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHH..HHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesek..kirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvk 97 
                 +l++GppG GKT+la  +a  ++++++++  +  l +y  e ++   ++++f +a ++   si+++DE+++l+  + +  s++++ ++  L t    + 
  CCE26878.1 640 ILFHGPPGAGKTALAAHLALRSDFPLVKMITPADLLHYRDEFARadYVHKIFVDAYKSP-ASIVVLDEVESLIDWN-EMGSSFSRVILRSLRTLTASEP 736
                 69************************988887777699998655117******997764.4***********9998.88999**********9999999 PP

                 TSSSTEEEEEEESSG CS
         AAA  98 kkeskvivigatnrp 112
                  k+++++v ++t + 
  CCE26878.1 737 PKNHRLLVFATTSEL 751
                 999988888888774 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 4
                 HTS..TSEEEEEETGGGHHHHHTTCCCHHHHHHHH CS
         AAA  55 eka..kpsilfiDEidalaksrsgseseeeervvn 87 
                  ++   p i+ +DE+ a+ k + +   +e ++v++
  CCE26878.1 764 DEQvaVPGIMNVDELGAILKGSGSFGPDEIDQVIA 798
                 34444579999999999998884444444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.2e-07   0.00019       8      77 ..     359     427 ..     354     483 .. 0.82
   2 !   14.8   0.0   5.9e-05     0.027       5      43 ..     637     666 ..     636     753 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 4.2e-07
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee..erpevv.fvtlpsstsskdllrellralglelkaerlssee 77 
                 l+++G++GtGKT+ +r++ + l++++   +  ++pev+ ++  +s+++ ++l+ +  +++++++++   s++ 
  CCE26878.1 359 LLLYGPPGTGKTLIARQIGKMLNARPP--KviNGPEVLnKYVGQSEENIRKLFADAEKEYKEKGDE--SSLHI 427
                 799*******************76543..256999999999999999**************99888..44444 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.9e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevv 43 
                 +g+++ +G++G+GKT l++ l+ +          + ++v
  CCE26878.1 637 RGSILFHGPPGAGKTALAAHLALRS---------DFPLV 666
                 6899*****************9987.........44444 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   5.9e-12   2.6e-09       1      35 [.     527     561 ..     527     584 .. 0.84
   2 ?    1.0   0.0      0.83   3.7e+02      26      40 ..     654     668 ..     634     675 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 5.9e-12
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgi 35 
                 dvdl+eLA++T++ySGA+++ ++r Aa    +r +
  CCE26878.1 527 DVDLEELASLTKNYSGAEISGVVRSAAAFSFERYT 561
                 9**************************87777654 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.83
   AAA_lid_3  26 AallAlrrgikeitm 40 
                 Aa+lAlr +++ ++m
  CCE26878.1 654 AAHLALRSDFPLVKM 668
                 9********997776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     1e-05    0.0045      25      69 ..     357     397 ..     348     474 .. 0.70
   2 !   19.3   0.0   2.7e-06    0.0012       6      45 ..     617     658 ..     615     744 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy 69 
                   +ll+G++G+GK+ ++r++ + l+++   +++g  + +     y
  CCE26878.1 357 KGLLLYGPPGTGKTLIARQIGKMLNARPPKVINGPEVLN----KY 397
                 679******************999888777777777777....33 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 2.7e-06
      AAA_16   6 eeeleqLlsalervrsgrp..elvllsGesGvGKsslvrell 45 
                 +e +e + s+++ vr++    +++l++G++G GK++l+ +l+
  CCE26878.1 617 DESIENMMSTVRGVRDSNLcrGSILFHGPPGAGKTALAAHLA 658
                 566788888899999998899*****************9987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.5e-06    0.0011       2      28 ..     359     386 ..     358     436 .. 0.85
   2 !   17.4   0.0   7.6e-06    0.0034       2      76 ..     640     709 ..     639     748 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.5e-06
                 EEEE--SSSSHHHHHHHGGGGB.S--EE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreve 28 
                 +lL GppGtgK+ +a+++ ++l  r+  
  CCE26878.1 359 LLLYGPPGTGKTLIARQIGKMLnARPPK 386
                 89********************444444 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 7.6e-06
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEver 76 
                 +l  GppG gK+ la +la +   +++ +  +     +dl+  r+ +  ++ +v +++v+a +  ++i+vlDEve 
  CCE26878.1 640 ILFHGPPGAGKTALAAHLALRSDFPLVKMITP-----ADLLHYRD-EFARADYVHKIFVDAYKsPASIVVLDEVES 709
                 6889***************9999998876544.....45555555.3577778**********8899*******85 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.5e-07   0.00011       6     105 ..     359     464 ..     354     471 .. 0.77
   2 ?    6.0   0.0     0.025        11       4      78 ..     638     708 ..     636     722 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.5e-07
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTS......EEEEETGGG----...---------H CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegG......ivllDEidKihpk...essgadvSre 93 
                 +ll gp g+Gkt++a+++ ++l++   ++  +++  e+l     ++e+ + +l   +++ ++++e+G      i+ +DE+d i+++   +  g    ++
  CCE26878.1 359 LLLYGPPGTGKTLIARQIGKMLNA---RPPKVINGPEVLNkyVGQSEENIRKLF--ADAEKEYKEKGdesslhIIIFDELDAICKQrgsGAGGGTGVGD 452
                 6899*******************5...889999999999855455666666665..55667788888888***************97653333333456 PP

                 HHHHHHHHHHH- CS
       AAA_2  94 gVqrdLLqileg 105
                  V++ LL  l+g
  CCE26878.1 453 SVVNQLLSKLDG 464
                 777777766665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.025
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.EEEEETGG CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.ivllDEid 78 
                 +sil+ gp g Gkt la  la   +    k ++ ad   +       +    + + + +  +++    iv lDE++
  CCE26878.1 638 GSILFHGPPGAGKTALAAHLALRSDFPLVKMITPADLLHYRD-----EFARADYVHKIFVDAYKSPAsIVVLDEVE 708
                 79***************9999888764444455555555555.....22222333333333333322366666666 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.7e-05     0.021      51      97 ..     357     402 ..     346     429 .. 0.84
   2 !   13.9   0.0   5.1e-05     0.023      38      81 ..     625     666 ..     592     691 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkkte 97 
                 +++Ll Gp+gtGkt +a  i k l++  p  +++g ev    v ++e
  CCE26878.1 357 KGLLLYGPPGTGKTLIARQIGKMLNAR-PPKVINGPEVLNKYVGQSE 402
                 89**********************966.5578999999998888877 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5.1e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  38 vivelikekklaGravLlaGpsgtGktalaiaiskelgedvpfv 81 
                   v+ +++ +l+  ++L+ Gp+g+Gktala  ++  l +d p v
  CCE26878.1 625 STVRGVRDSNLCRGSILFHGPPGAGKTALAAHLA--LRSDFPLV 666
                 4577799*****99***************98775..55555555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0    0.0002     0.088       2      25 ..     360     402 ..     359     438 .. 0.70
   2 ?   -0.7   0.0       4.2   1.9e+03       5      39 ..     446     490 ..     445     514 .. 0.79
   3 !   13.2   0.0   0.00022     0.097       1      49 [.     640     684 ..     640     727 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.0002
      AAA_18   2 lltGtpGvGKttlakeLskrlgf...................g 25 
                 ll G+pG+GKt +a+ + k+l+                     
  CCE26878.1 360 LLYGPPGTGKTLIARQIGKMLNArppkvingpevlnkyvgqsE 402
                 689*****************96668865555444444433333 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 4.2
      AAA_18   5 GtpGvGKttlakeLskrlgf..........gvnlrdvakenglll 39 
                 G  GvG + + + Lsk+ g+           +n +d++ e  ++ 
  CCE26878.1 446 GGTGVGDSVVNQLLSKLDGVdqlnnilligMTNRKDMIDEALMRP 490
                 5679999*******9986666666678888888888888777765 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 0.00022
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdes 49 
                 Il  G+pG+GKt la +L+ r    + l ++++  +ll ++d++   + 
  CCE26878.1 640 ILFHGPPGAGKTALAAHLALRS--DFPLVKMITPADLLHYRDEF--ARA 684
                 7889**************9987..88888888888888888887..333 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   0.00019     0.085      33      67 ..     356     391 ..     348     399 .. 0.77
   2 ?   -1.2   0.0       3.3   1.5e+03       3      34 ..     391     421 ..     389     429 .. 0.71
   3 !   13.3   0.0   0.00011      0.05      17      56 ..     621     660 ..     610     682 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00019
      RuvB_N  33 ldhvllyGpPGlGkttlakiiakelgvk.lkitsgP 67 
                 +  +llyGpPG Gkt +a+ i k l+++  k+  gP
  CCE26878.1 356 VKGLLLYGPPGTGKTLIARQIGKMLNARpPKVINGP 391
                 45579****************999987523556666 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.3
      RuvB_N   3 Pksleeyigqekvkeklkifieaakkreeald 34 
                 P+ l++y+gq++  +  k+f +a k+ +e+ d
  CCE26878.1 391 PEVLNKYVGQSEE-NIRKLFADAEKEYKEKGD 421
                 899*******874.334667777776666555 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 0.00011
      RuvB_N  17 eklkifieaakkreealdhvllyGpPGlGkttlakiiake 56 
                 e++  +++  +  +     +l++GpPG Gkt+la+ +a  
  CCE26878.1 621 ENMMSTVRGVRDSNLCRGSILFHGPPGAGKTALAAHLALR 660
                 5566667777777777889***************988865 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00031      0.14       3      48 ..     360     408 ..     359     429 .. 0.78
   2 !   14.0   0.0   9.5e-05     0.042       2      23 ..     640     661 ..     640     686 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00031
      AAA_33   3 llvGlpGsGKstlaerllkklg...avllssdtlrrrlfgtdqqsktdy 48 
                 ll G+pG+GK+  a+++ k l      +++ ++++++++g+ +++++++
  CCE26878.1 360 LLYGPPGTGKTLIARQIGKMLNarpPKVINGPEVLNKYVGQSEENIRKL 408
                 688*************955555555999****99999999766666544 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 9.5e-05
      AAA_33   2 vllvGlpGsGKstlaerllkkl 23 
                 +l++G+pG+GK+ la +l+ + 
  CCE26878.1 640 ILFHGPPGAGKTALAAHLALRS 661
                 69**************998655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.1e-05    0.0047      24      47 ..     358     381 ..     347     400 .. 0.85
   2 !    9.8   0.0    0.0011      0.49      24      42 ..     639     657 ..     629     666 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.1e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllp 47 
                    lll+GppG+GKt++a+++ ++l 
    CCE26878.1 358 GLLLYGPPGTGKTLIARQIGKMLN 381
                   48****************999986 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0011
  Mg_chelatase  24 nlllvGppGsGKtmlakrl 42 
                   ++l+ GppG+GKt la+ l
    CCE26878.1 639 SILFHGPPGAGKTALAAHL 657
                   79**************987 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00018      0.08       2      51 ..     360     401 ..     359     429 .. 0.65
   2 !   10.2   0.0    0.0017      0.75       1      48 [.     640     696 ..     640     724 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00018
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqe 51 
                   +lyGp+g+GK+++a+++ k l       + ++v+      +++++Y gq 
    CCE26878.1 360 LLYGPPGTGKTLIARQIGKMLN-----ARPPKVIN---GPEVLNKYVGQS 401
                   79**************777776.....33344433...555555555544 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0017
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl..........klkkkdsvys.rnpeddfwdgYt 48 
                   i+++Gp+g GK+ la +La +    +           l+ +d++     + + f+d Y+
    CCE26878.1 640 ILFHGPPGAGKTALAAHLALRSD--FplvkmitpadLLHYRDEFARaDYVHKIFVDAYK 696
                   689**************875543..2223334555545555555553344444446666 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0012      0.54       5      75 ..     359     435 ..     356     468 .. 0.75
   2 !   12.5   0.0   0.00026      0.12       5      86 ..     640     720 ..     637     754 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0012
      AAA_14   5 lvitGaRrvGKTtllkqlikell......vkkesilyinldderdkkladpekllelileklkeekktylflDEiqe 75 
                 l++ G+  +GKT +++q+ k l       ++  ++l   + + ++  ++ +++ +++++ek  e+  +++++DE   
  CCE26878.1 359 LLLYGPPGTGKTLIARQIGKMLNarppkvINGPEVLNKYVGQSEENIRKLFADAEKEYKEKGDESSLHIIIFDELDA 435
                 6899***************98887666664444444444444333334445678888888844457888*****865 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00026
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderd.....kkladpekllelileklkeekktylflDEiqevpewekalksl 86 
                 ++  G+  +GKT l+ +l+ ++      +  +++ ++ d     +++a  + +++++ + +k+   ++++lDE+  + +w ++  s+
  CCE26878.1 640 ILFHGPPGAGKTALAAHLALRSD-----FPLVKMITPADllhyrDEFARADYVHKIFVDAYKS-PASIVVLDEVESLIDWNEMGSSF 720
                 56789999********9985544.....44444444444322221233344577888887655.7899************9876665 PP

>> CDC48_2  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   6.7e-08     3e-05       1      53 [.     210     263 ..     210     281 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 6.7e-08
                 ..SCCCCH.HHHCCCTTEEE-TTEEEEECCTCCCEEEEEEEECCCC..SCEEECTS CS
     CDC48_2   1 ridgdema.ylkrqFlgrpvtkGdlvvfefkgqeiklvVvstePkg..pvgitetT 53 
                 ++d+++++ ++k++++++++++G+++ +e ++ ++  +V++++ ++  +   +e+T
  CCE26878.1 210 PYDEEDLSsEFKKRYQNQILAPGQRMIMELRSIPLYITVRTVDLFDllA--SSEDT 263
                 689999999********************************99888442..34444 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00052      0.23      44      70 ..     353     379 ..     343     388 .. 0.85
   2 !    9.5   0.0    0.0017      0.77      49      70 ..     639     660 ..     613     723 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00052
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgve 70 
                 i++ ++++l Gp+G+GK+ +a  +g+ 
  CCE26878.1 353 IQHVKGLLLYGPPGTGKTLIARQIGKM 379
                 6677899**************999975 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0017
   IstB_IS21  49 nivllGpsGvGKshlaialgve 70 
                 +i++ Gp+G+GK+ la+ l+ +
  CCE26878.1 639 SILFHGPPGAGKTALAAHLALR 660
                 68999***********988754 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   8.1e-05     0.036       5      77 ..     359     436 ..     356     485 .. 0.72
   2 ?    6.6   0.0     0.013       5.7       5      22 ..     640     657 ..     637     713 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.1e-05
      AAA_24   5 iliyGpsgiGKTtlakel.....gpkplfidtekGlksldadkfpdie.swedfldevvelaaeladyktlviDtidel 77 
                 +l+yGp+g+GKT +a+++        p +i+  + l++  +   ++i+  ++d  +e++e + +++ ++++++D +d +
  CCE26878.1 359 LLLYGPPGTGKTLIARQIgkmlnARPPKVINGPEVLNKYVGQSEENIRkLFADAEKEYKE-KGDESSLHIIIFDELDAI 436
                 68****************666664555555555545444444444444333333333333.344455666666666665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.013
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 il  Gp+g+GKT la++l
  CCE26878.1 640 ILFHGPPGAGKTALAAHL 657
                 7889***********998 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0013       0.6      20      47 ..     357     386 ..     337     407 .. 0.77
   2 !    9.1   0.0    0.0028       1.3      21      44 ..     630     662 ..     611     722 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0013
                 EEEEEEESTTSSHHHHHHHHHHHTT--..- CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgve..e 47 
                 + +lL+G+ G+GKT ++r++ k l+ +  +
  CCE26878.1 357 KGLLLYGPPGTGKTLIARQIGKMLNARppK 386
                 349*******************99886552 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0028
                 E.........EEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  21 v.........ilLeGdLGaGKTtlvrglakalg 44 
                 v         il++G+ GaGKT+l+ +la   +
  CCE26878.1 630 VrdsnlcrgsILFHGPPGAGKTALAAHLALRSD 662
                 1333445556***************99987655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0092       4.1      37      52 ..     360     375 ..     351     381 .. 0.89
   2 !   11.0   0.0   0.00051      0.23      34      55 ..     638     659 ..     612     661 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0092
      AAA_25  37 llaGapgtGKttlald 52 
                 ll+G+pgtGKt +a +
  CCE26878.1 360 LLYGPPGTGKTLIARQ 375
                 89**********9866 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00051
      AAA_25  34 elallaGapgtGKttlaldlal 55 
                 + +l+ G+pg+GKt+la +lal
  CCE26878.1 638 GSILFHGPPGAGKTALAAHLAL 659
                 67899***************98 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00011      0.05      27      58 ..     350     381 ..     346     389 .. 0.84
   2 ?    4.9   0.0     0.036        16      35      53 ..     639     657 ..     633     669 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkld 58 
                 ++ +++ k +ll+Gp GtGKt+i++++ k l+
  CCE26878.1 350 NMGIQHVKGLLLYGPPGTGKTLIARQIGKMLN 381
                 66789999*****************9888776 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.036
       AAA_7  35 pvllvGptGtGKtviikdl 53 
                 ++l+ Gp G GKt+++ +l
  CCE26878.1 639 SILFHGPPGAGKTALAAHL 657
                 68************99884 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0055       2.5       4      38 ..     361     401 ..     359     424 .. 0.75
   2 !   10.8   0.0   0.00094      0.42       2      27 ..     640     666 ..     639     674 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0055
      AAA_28   4 itGgestGKTtlleaLaar....gypvv..pEaareileek 38 
                 + G+++tGKT +++++ ++      +v+  pE+  +++ + 
  CCE26878.1 361 LYGPPGTGKTLIARQIGKMlnarPPKVIngPEVLNKYVGQS 401
                 78***********9988544332566878899998888544 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00094
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvv 27 
                 i + G++++GKT l+++La r ++p v
  CCE26878.1 640 ILFHGPPGAGKTALAAHLALRsDFPLV 666
                 7899***************66567665 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.84   3.7e+02      24      77 ..     213     265 ..     211     274 .. 0.80
   2 !    8.4   0.0    0.0022      0.98     117     137 ..     359     379 ..     351     382 .. 0.89
   3 !    7.1   0.0    0.0058       2.6     114     143 ..     637     668 ..     627     674 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.84
   Parvo_NS1  24 eedWaaidsesYlrlsrsragrrqienaleqakirmfstkaaldilakkevtad 77 
                 eed+ ++ ++ Y+    ++++r+ i ++ +++  ++++t+ ++d+la++e ta 
  CCE26878.1 213 EEDLSSEFKKRYQNQILAPGQRM-IMELRSIPLYITVRTVDLFDLLASSEDTAR 265
                 67777778788877777777766.999***********************9933 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0022
   Parvo_NS1 117 vwfyGpantGktnlaeaIaka 137
                 +++yGp+ tGkt +a++I k 
  CCE26878.1 359 LLLYGPPGTGKTLIARQIGKM 379
                 689**************9776 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0058
   Parvo_NS1 114 rntvwfyGpantGktnlae..aIakavplygc 143
                 r+ ++f+Gp+  Gkt la+  a+   +pl+++
  CCE26878.1 637 RGSILFHGPPGAGKTALAAhlALRSDFPLVKM 668
                 899****************4444455566665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.086        38      23      43 ..     359     379 ..     350     388 .. 0.85
   2 ?    4.1   0.1     0.084        38      93     131 ..     396     437 ..     384     460 .. 0.78
   3 ?    1.0   0.0      0.72   3.2e+02      25      41 ..     642     658 ..     637     669 .. 0.83
   4 ?    6.2   0.0      0.02       8.8     120     167 ..     700     750 ..     673     758 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.086
    ATPase_2  23 yfiYGpegsGKtaLlkeiien 43 
                 +++YGp g GKt + ++i + 
  CCE26878.1 359 LLLYGPPGTGKTLIARQIGKM 379
                 579**********99998655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.084
    ATPase_2  93 eilkeksklvfkaielllekikkkgkk...iiiiiDelqkli 131
                 + + +  +++ k ++++ ++ k+kg +    iii+Del  + 
  CCE26878.1 396 KYVGQSEENIRKLFADAEKEYKEKGDEsslHIIIFDELDAIC 437
                 3334667777777778888888888889*99*******9886 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.72
    ATPase_2  25 iYGpegsGKtaLlkeii 41 
                   Gp g GKtaL  +++
  CCE26878.1 642 FHGPPGAGKTALAAHLA 658
                 57**********98876 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.02
    ATPase_2 120 iiiiiDelqklid...lglngaellvkeLlnliesltkekhlcvviclsSe 167
                  i+++De+  lid   +g+  ++  + +L +l  s + ++h  +v++++Se
  CCE26878.1 700 SIVVLDEVESLIDwneMGSSFSRVILRSLRTLTASEPPKNHRLLVFATTSE 750
                 5899*******9644477888999**************************8 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0016      0.71      20      44 ..     359     383 ..     349     422 .. 0.72
   2 !    7.4   0.0    0.0075       3.4      19      39 ..     639     659 ..     614     692 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0016
      AAA_11  20 tliqGPPGtgKTktivellsqllsr 44 
                  l+ GPPGtgKT    ++ ++l+ r
  CCE26878.1 359 LLLYGPPGTGKTLIARQIGKMLNAR 383
                 5899********8888888888532 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0075
      AAA_11  19 itliqGPPGtgKTktivells 39 
                   l++GPPG gKT   ++l  
  CCE26878.1 639 SILFHGPPGAGKTALAAHLAL 659
                 469**********87776655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00037      0.17       5      98 ..     350     468 ..     348     486 .. 0.77
   2 ?    4.7   0.0     0.092        41      15      32 ..     641     658 ..     635     668 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00037
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........................ 79 
                 ++ +++ + + + G+ G+GK+ +++ + ++l+    ++ ++g ++ ++   +++++i+ l+ +++  ++ +  e+                        
  CCE26878.1 350 NMGIQHVKGLLLYGPPGTGKTLIARQIGKMLNARPPKV-INGPEVLNKYVGQSEENIRKLFADAEKEYKEKGDESslhiiifdeldaickqrgsgaggg 447
                 66778888899***************************.******999**************9877777765555677777766666555555555554 PP

                 ..HHHTCHHHHHHHSTTGGTT CS
                 ..xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..esdeeiekalsklglkelk 98 
                     d+ ++++lskl+ ++  
  CCE26878.1 448 tgVGDSVVNQLLSKLDGVDQL 468
                 444444466666666655555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.092
                 EEEESTTSSHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlklla 32 
                  + G+ GaGK+ L++ la
  CCE26878.1 641 LFHGPPGAGKTALAAHLA 658
                 578**********99987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.032        14       3      24 ..     359     380 ..     357     388 .. 0.84
   2 ?   -2.6   0.0        10   4.5e+03      85      99 ..     428     442 ..     413     472 .. 0.71
   3 !   10.0   0.0    0.0013      0.59       3      22 ..     640     659 ..     639     662 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.032
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                 ++l G++G GKT  ++++   +
  CCE26878.1 359 LLLYGPPGTGKTLIARQIGKML 380
                 5899************997655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 10
                 EEEE-STT-SS-TCH CS
       NACHT  85 lilDglDelvtdlgq 99 
                 +i+D lD ++++ g 
  CCE26878.1 428 IIFDELDAICKQRGS 442
                 788888888887766 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.0013
                 EEEEC-TTTCHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklal 22 
                 ++ +G++G GKT+L+++lal
  CCE26878.1 640 ILFHGPPGAGKTALAAHLAL 659
                 6789*************986 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.9   1.3e+03      17      31 ..     359     373 ..     352     394 .. 0.86
   2 ?    1.0   0.0      0.71   3.2e+02     116     136 ..     419     439 ..     373     445 .. 0.69
   3 ?    1.2   0.0      0.61   2.7e+02      14      35 ..     637     658 ..     618     663 .. 0.81
   4 !   10.0   0.0    0.0012      0.55     122     170 ..     699     750 ..     685     757 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.9
                 EEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxx RF
        DEAD  17 vlvaaeTGsGKTlaf 31 
                 +l+ ++ G+GKTl++
  CCE26878.1 359 LLLYGPPGTGKTLIA 373
                 6788999*****986 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.71
                 SSHCTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        DEAD 116 klnlsqvrflVlDEadrlldq 136
                 k + s++ ++++DE d + +q
  CCE26878.1 419 KGDESSLHIIIFDELDAICKQ 439
                 33478999********99887 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.61
                 TCEEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipv 35 
                  g++l +++ G+GKT+ ++  +
  CCE26878.1 637 RGSILFHGPPGAGKTALAAHLA 658
                 4689999********9876555 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.0012
                 EEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        DEAD 122 vrflVlDEadrlldq..gfsdfinrilnqlpqitcdgk.lqrqvivlSATlp 170
                  +++VlDE+  l d+    s f + il++l++ t++++ ++++++v+  T +
  CCE26878.1 699 ASIVVLDEVESLIDWneMGSSFSRVILRSLRTLTASEPpKNHRLLVFATTSE 750
                 578************9644555555778888889999978888888887765 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0044         2       5      25 ..     360     380 ..     357     442 .. 0.65
   2 !    6.7   0.0    0.0084       3.8       4      25 ..     640     661 ..     637     691 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0044
     DUF2075   5 lVtGvaGtGKtvvllnllael 25 
                 l  G +GtGKt+++ ++   l
  CCE26878.1 360 LLYGPPGTGKTLIARQIGKML 380
                 6789**********9998777 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0084
     DUF2075   4 vlVtGvaGtGKtvvllnllael 25 
                 +l +G +G+GKt ++ +l+ + 
  CCE26878.1 640 ILFHGPPGAGKTALAAHLALRS 661
                 5779*************99876 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0043       1.9      24      45 ..     358     379 ..     348     391 .. 0.81
   2 ?    6.1   0.0     0.019       8.5       7      43 ..     619     658 ..     613     670 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0043
                      -EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat  24 svlitGesGtGKellaraihea 45 
                       +l+ G  GtGK+l+ar+i + 
       CCE26878.1 358 GLLLYGPPGTGKTLIARQIGKM 379
                      579**************99765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.019
                      HHHHHHHHHHHHCTSS...S-EEEECSTTSSHHHHHHHHH CS
  Sigma54_activat   7 alkelleqikkvaktd...lsvlitGesGtGKellaraih 43 
                      ++++++++++ v +++    s+l +G  G+GK+ la ++ 
       CCE26878.1 619 SIENMMSTVRGVRDSNlcrGSILFHGPPGAGKTALAAHLA 658
                      455555555555555543389**************98775 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0068         3      23      42 ..     359     378 ..     347     383 .. 0.85
   2 ?    5.1   0.0     0.025        11      22      40 ..     639     657 ..     620     666 .. 0.82
   3 ?    0.6   0.0      0.57   2.6e+02     102     136 ..     697     731 ..     671     764 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0068
                 EEEEESTTSSHHHHHHHHCC CS
      NB-ARC  23 valvGmgGvGKttlakqiln 42 
                 + l+G +G GKt +a+qi +
  CCE26878.1 359 LLLYGPPGTGKTLIARQIGK 378
                 679**************976 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
                 EEEEEESTTSSHHHHHHHH CS
      NB-ARC  22 vvalvGmgGvGKttlakqi 40 
                  + ++G +G GKt la++ 
  CCE26878.1 639 SILFHGPPGAGKTALAAHL 657
                 5789***********9875 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.57
                 CTTEEEEEEEE-SHHHH.....HHHHCHTTSEEEE CS
      NB-ARC 102 tkrfllvlDDVweeedwdkigvvlparenrlrvll 136
                 +  +++vlD V    dw+++g  ++    r+   l
  CCE26878.1 697 SPASIVVLDEVESLIDWNEMGSSFSRVILRSLRTL 731
                 44789***************999997777765555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0013      0.56      22      50 ..     360     388 ..     353     433 .. 0.89
   2 ?    4.6   0.1     0.051        23      22      38 ..     641     657 ..     634     723 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0013
      AAA_30  22 vltGpAGtGKttalkalreaweaaggrvi 50 
                 +l Gp+GtGKt + +++ ++++a+  +vi
  CCE26878.1 360 LLYGPPGTGKTLIARQIGKMLNARPPKVI 388
                 688*****************999987776 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.051
      AAA_30  22 vltGpAGtGKttalkal 38 
                 + +Gp+G+GKt + ++l
  CCE26878.1 641 LFHGPPGAGKTALAAHL 657
                 678********998876 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.2   0.00053      0.24      13      38 ..     350     375 ..     321     377 .. 0.85
   2 ?   -1.7   0.0       3.4   1.5e+03      51      97 ..     575     621 ..     569     636 .. 0.74
   3 ?    3.3   0.0     0.099        44      21      41 ..     639     659 ..     609     662 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00053
      ATPase  13 kgGipegrvvlitGepGtGKtifalq 38 
                 + Gi + +  l++G pGtGKt++a q
  CCE26878.1 350 NMGIQHVKGLLLYGPPGTGKTLIARQ 375
                 479999*****************987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.4
      ATPase  51 gvfvtveepaedlrenakslGwdlekleeegklaiidasesaeesae 97 
                 g+ v  +   ++l +   ++G+  e++e++ kl ii  s++ +es+e
  CCE26878.1 575 GMTVNANDFRQALTQIRPHFGVPEEEIERSIKLGIISYSQQLDESIE 621
                 55566666667777777799999999999999999999998777554 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.099
      ATPase  21 vvlitGepGtGKtifalqFli 41 
                 ++l  G pG+GKt +a++ ++
  CCE26878.1 639 SILFHGPPGAGKTALAAHLAL 659
                 68999***********98765 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.035        16       1      48 [.     362     411 ..     362     435 .. 0.67
   2 !    8.4   0.0    0.0063       2.8       2      26 ..     644     668 ..     643     678 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.035
                 EE-TTSSHHHHHHHHHHHH...TEEEEEHHHHHHHHHHTTTSHSSHHHHCT CS
      AAA_17   1 lGgPGsGKgtqceklveky...gfthlsaGdllreeakrgglakardemrk 48 
                 +G+PG GK+ +++++ + +     ++++  ++l + + +++ ++ r+ +++
  CCE26878.1 362 YGPPGTGKTLIARQIGKMLnarPPKVINGPEVLNKYVGQSE-ENIRKLFAD 411
                 7***********99998884434567776666666554443.234444444 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0063
                 E-TTSSHHHHHHHHHHHHTEEEEEH CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsa 26 
                 G+PG+GK+ ++++l+ + +f+ + +
  CCE26878.1 644 GPPGAGKTALAAHLALRSDFPLVKM 668
                 9**************9999998875 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0028       1.3      12      36 ..     358     382 ..     350     409 .. 0.88
   2 ?   -1.5   0.0       6.4   2.9e+03      18      53 ..     445     479 ..     441     555 .. 0.72
   3 ?    3.0   0.0      0.26   1.2e+02      10      29 ..     637     656 ..     628     662 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0028
      AAA_19  12 vllvtaGpGtGKTrvlkhivallve 36 
                  ll+ ++pGtGKT + ++i ++l++
  CCE26878.1 358 GLLLYGPPGTGKTLIARQIGKMLNA 382
                 5799**********99999888765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 6.4
      AAA_19  18 GpGtGKTr.vlkhivallvelggvkpeeillvaftgr 53 
                 G GtG    v+++ ++ l  + +  +++ill+ +t+r
  CCE26878.1 445 GGGTGVGDsVVNQLLSKLDGVDQ--LNNILLIGMTNR 479
                 55555443134444444444443..488999999888 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.26
      AAA_19  10 ekvllvtaGpGtGKTrvlkh 29 
                 ++ +l  ++pG GKT +  h
  CCE26878.1 637 RGSILFHGPPGAGKTALAAH 656
                 5678889********98766 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0021      0.93       2      39 ..     359     396 ..     358     439 .. 0.80
   2 ?    3.9   0.0       0.1        46       2      37 ..     640     675 ..     639     679 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0021
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPs 39 
                 +ll g PG++ktl++++++k+l+++  ++   p++l  
  CCE26878.1 359 LLLYGPPGTGKTLIARQIGKMLNARPPKVINGPEVLNK 396
                 6899*******************999888888887765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.1
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdll 37 
                 +l++g PG +kt l+ +la   d  + ++   +dll
  CCE26878.1 640 ILFHGPPGAGKTALAAHLALRSDFPLVKMITPADLL 675
                 7899**************987777666665556665 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0075       3.4      22      40 ..     359     377 ..     349     388 .. 0.82
   2 ?    5.6   0.0     0.021       9.4      23      42 ..     641     660 ..     623     663 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0075
                 EEEE--TTSSTTHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavala 40 
                 +   Gp GtGKt++a +++
  CCE26878.1 359 LLLYGPPGTGKTLIARQIG 377
                 6779***********8876 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.021
                 EEE--TTSSTTHHHHHHHHH CS
        PhoH  23 faiGpaGtGKtylavalave 42 
                    Gp G+GKt la  la++
  CCE26878.1 641 LFHGPPGAGKTALAAHLALR 660
                 457************99985 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.026        12      25      96 ..     357     423 ..     337     440 .. 0.75
   2 ?    5.7   0.0      0.03        13      26      47 ..     639     660 ..     607     662 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.026
                 SEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B-- CS
      ResIII  25 krglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka 96 
                 k +l+  + GtGKTl+a ++ + l    ++     ++++ ++l++   + ++ + + +++++k+++++++++
  CCE26878.1 357 KGLLLYGPPGTGKTLIARQIGKMLNARPPK-----VINGPEVLNKYVGQSEENIRKLFADAEKEYKEKGDES 423
                 567788999*******99998888876553.....6788888888887777777777777777777776666 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.03
                 EEEEEESTTSTHHHHHHHHHHH CS
      ResIII  26 rglikmaTGtGKTlvaaklier 47 
                  +l++ + G+GKT +aa+l+ r
  CCE26878.1 639 SILFHGPPGAGKTALAAHLALR 660
                 7899*************99875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.43   1.9e+02      23      50 ..     360     387 ..     355     544 .. 0.66
   2 ?    9.5   0.0    0.0029       1.3       4      37 ..     620     655 ..     619     659 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.43
      AAA_23  23 lItGpNGaGKTTildAiklaLygetprl 50 
                 l++Gp G+GKT i + i  +L  ++p+ 
  CCE26878.1 360 LLYGPPGTGKTLIARQIGKMLNARPPKV 387
                 899********99988877777765544 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0029
      AAA_23   4 ienfrsf.rdqe.idFskgltlItGpNGaGKTTild 37 
                 ien +s  r++   ++ +g  l++Gp GaGKT++  
  CCE26878.1 620 IENMMSTvRGVRdSNLCRGSILFHGPPGAGKTALAA 655
                 788888876644489999**************9976 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.013       5.7      32      58 ..     353     379 ..     346     395 .. 0.81
   2 ?   -1.7   0.0       3.5   1.6e+03     116     132 ..     421     437 ..     400     442 .. 0.73
   3 ?    1.3   0.0      0.42   1.9e+02      21      54 ..     618     656 ..     609     663 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.013
        TniB  32 rkrmpnlllvGdsnnGKtmivekFarl 58 
                  + ++ lll+G++ +GKt i+++  ++
  CCE26878.1 353 IQHVKGLLLYGPPGTGKTLIARQIGKM 379
                 567899**************9987665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.5
        TniB 116 relkvrvLiiDEihnll 132
                 +e +++++i+DE++ + 
  CCE26878.1 421 DESSLHIIIFDELDAIC 437
                 56788999999999876 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.42
        TniB  21 erLeeLleypkrkrm.....pnlllvGdsnnGKtmivek 54 
                 e++e+++++ +  r       ++l++G++  GKt+++ +
  CCE26878.1 618 ESIENMMSTVRGVRDsnlcrGSILFHGPPGAGKTALAAH 656
                 445555555444443000114679**********99876 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0087       3.9      47      81 ..     358     392 ..     348     419 .. 0.81
   2 ?    1.5   0.0      0.56   2.5e+02      48      79 ..     640     671 ..     617     728 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0087
       Rad17  47 iLLisGPsGCgkstvvkvLskelgiklrewlnpvs 81 
                  LL+ GP+G gk+ + + + k l  +  + +n+ +
  CCE26878.1 358 GLLLYGPPGTGKTLIARQIGKMLNARPPKVINGPE 392
                 599********************999988888754 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.56
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklrewlnp 79 
                 +L  GP+G gk+     L+    + l + + p
  CCE26878.1 640 ILFHGPPGAGKTALAAHLALRSDFPLVKMITP 671
                 6899*******998888876665555555555 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0         1   4.6e+02       5      70 ..     363     432 ..     359     434 .. 0.61
   2 ?    8.5   0.0    0.0033       1.5       1      71 [.     640     707 ..     640     711 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1
  Viral_helicase1   5 GvpGcGKStlirkllrts..liltvnrptaelltegkpklpnlsvrtvdsflmalvks...tkgkililDE 70 
                      G pG GK+ + r++ ++   +  +v++   e+l++ + +++ +  + + ++++  +++    + +i+i+DE
       CCE26878.1 363 GPPGTGKTLIARQIGKMLnaRPPKVING-PEVLNKYVGQSEENIRKLFADAEKEYKEKgdeSSLHIIIFDE 432
                      78******99999988844433333333.455555555555555556666666555554444567777777 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0033
  Viral_helicase1   1 ivvhGvpGcGKStlirkllrts..liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEy 71 
                      i+ hG pG+GK+ l  +l+  s    +++++p a ll  + +++ ++ v   + f  a + +  + i++lDE 
       CCE26878.1 640 ILFHGPPGAGKTALAAHLALRSdfPLVKMITP-ADLLHYRDEFARADYVH--KIFVDAYKSP--ASIVVLDEV 707
                      578***************99977766667777.77777766555555444..4445555555..889999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              40  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 5779.39
//
Query:       CCE26879.1  [L=1850]
Description: related to LTE1 GDP/GTP exchange factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-46  159.2   0.3    1.8e-46  158.6   0.3    1.3  1  RasGEF    RasGEF domain
    1.7e-11   44.3   0.3    4.5e-11   42.9   0.3    1.7  1  RasGEF_N  RasGEF N-terminal motif


Domain annotation for each model (and alignments):
>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.6   0.3     2e-50   1.8e-46       2     177 .]    1607    1800 ..    1606    1800 .. 0.88

  Alignments for each domain:
  == domain 1  score: 158.6 bits;  conditional E-value: 2e-50
      RasGEF    2 lAeqltlieaelfskikpeellgsawsked...........rs...pnveaviarfnrlsnwvaseilseeslkkRakviekfikiakecrklnNfn 84  
                  lA+q+tlie + + +i+++el++++w +             r+   + v+ viarfn +++w +sei+ ++++++Ra++i k+i+ia +cr+++Nf+
  CCE26879.1 1607 LAQQFTLIEKDALTEIDWRELIDMNWRHFAssnarswvdflRNidaQGVDVVIARFNIMVKWAISEIVLTQHIEERARCIIKLIHIAAHCRQYRNFA 1703
                  8************************987776666555444411443447779********************************************* PP

      RasGEF   85 slmailsaLqsspvsrLkktweavskkslktleeleelmspennfknyrealkssasskpciPflglyltdltfieegnpdtl.....egk.iNfeK 175 
                  +l++ + aL+s++vsrL+ktw+ v++ +lktl++le l+ p++nf+++re+++   ss +ciPf+g+y++dl++++++ p  +     + + +Nfe+
  CCE26879.1 1704 TLAQLTIALSSNEVSRLSKTWDLVPEADLKTLHDLEVLVTPSRNFHKMREEMEVG-SSGGCIPFVGIYTHDLLYNAQR-PAEIavssaRAPlVNFER 1798
                  ****************************************************988.6***************998765.3333466667777****9 PP

      RasGEF  176 rr 177 
                  +r
  CCE26879.1 1799 CR 1800
                  97 PP

>> RasGEF_N  RasGEF N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.3     5e-15   4.5e-11       2      96 ..     426     511 ..     425     524 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 5e-15
    RasGEF_N   2 vkagtlekLierLtskrlldddfletFLltyrsFttpaeLlekLieryeinppnnlesdesnswnsksssnirlrvlsvlkewvenhyy.dfsddk 96 
                 v a+t+ +L++ +ts+++ld+++l++F+lt+rsF +p++Ll  L++r +      +e              +r+r++ +l++w+ n++  df  ++
  CCE26879.1 426 VTAATPSRLVAEITSPSFLDYELLSDFFLTFRSFLEPSDLLRMLVARLRWALDRVDEV----------GMIVRVRTFVALRHWILNYFMdDFIVEY 511
                 779*********************************************5332222222..........2349****************96776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.47
# Mc/sec: 11909.75
//
Query:       CCE26880.1  [L=280]
Description: probable ribosome-associated protein S2 (Rap-1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-26   92.1   0.3    9.2e-15   54.4   0.1    2.1  2  Ribosomal_S2  Ribosomal protein S2


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.5e-13   2.6e-09       1      98 [.      20     115 ..      20     120 .. 0.91
   2 !   54.4   0.1   5.1e-19   9.2e-15     147     212 ..     119     184 ..     114     186 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.5e-13
  Ribosomal_S2   1 LLeagvhfGhqtrrwnpkmkpyIyger.ngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakrangyyvnerWlgGtLTNf 96 
                   LL+a++h+G   ++ + +m+py+ ++r +g+ ii++ kt +++  a++++   + +   i  ++ +   ++av + a+ +++  +  r+++G++TN+
    CCE26880.1  20 LLAAQTHVGS--KNLQVHMEPYLWKTRaDGVNIINIGKTWEKIVLAARIIVA-IDNPADICVISARPYGQRAVLKFAAHTGASSIAGRFTPGSFTNY 113
                   89*******5..667899******999469********************86.578999*************************************8 PP

  Ribosomal_S2  97 kt 98 
                    t
    CCE26880.1 114 IT 115
                   65 PP

  == domain 2  score: 54.4 bits;  conditional E-value: 5.1e-19
  Ribosomal_S2 147 klPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIpaNddsirsiklilgvladai 212
                   k P l++v+dp+ +  a+kEa+ ++ipvia++Dt+++++ vd +Ip N++   +i  +  +la+ +
    CCE26880.1 119 KEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSSTEYVDVAIPTNNKGRHAIGTVWWLLAREV 184
                   78******************************************************9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2011.96
//
Query:       CCE26881.1  [L=322]
Description: related to ribosomal protein S15 precursor (mitochondrial) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-24   83.4   0.1    1.5e-22   79.6   0.1    2.4  2  Ribosomal_S15  Ribosomal protein S15


Domain annotation for each model (and alignments):
>> Ribosomal_S15  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.031   5.5e+02       3      15 ..     202     214 ..     200     218 .. 0.86
   2 !   79.6   0.1   8.2e-27   1.5e-22       9      80 ..     232     307 ..     226     308 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.031
                    HHHHHHSSSTT-T CS
  Ribosomal_S15   3 elikefqrhekDt 15 
                    ++i+ef+rh++D 
     CCE26881.1 202 RIIEEFGRHNTDK 214
                    68********995 PP

  == domain 2  score: 79.6 bits;  conditional E-value: 8.2e-27
                    SSSTT-TSSHHHHHHHHHHHHHHHHHHHHCTT..T-HHHHHHHHHHHHHHHHHHHHHHHH-H..HHHHHHHHHCTS CS
  Ribosomal_S15   9 qrhekDtGspevqiallterInnltehlkenk..kDkhsrrgLlklvskRrkllkYLkrkdv..erYkklieklgl 80 
                     r+  DtGs+evqia+lt++I+++++ l+ n+  kD+h++r+L +lv++R+kll Y++rk++  er+++l+ek+gl
     CCE26881.1 232 DRAGPDTGSSEVQIAILTAKIRAVKNALDINRgwKDYHNKRNLSLLVHRRQKLLAYMERKERgsERWTNLLEKMGL 307
                    56778*********************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2319.60
//
Query:       CCE26882.1  [L=363]
Description: probable H+-transporting ATPase, vacuolar, 41 kDa subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.7e-107  357.5   0.0   9.7e-107  357.3   0.0    1.0  1  vATP-synt_AC39  ATP synthase (C/AC39) subunit


Domain annotation for each model (and alignments):
>> vATP-synt_AC39  ATP synthase (C/AC39) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.3   0.0  5.4e-111  9.7e-107       1     336 []      13     359 ..      13     359 .. 0.94

  Alignments for each domain:
  == domain 1  score: 357.3 bits;  conditional E-value: 5.4e-111
                     HHHHHHHHGGGS--HHHHHHHTTS.-HHHHHHHHHTSGGGGG--.....SSSHHHHHHHHHHHHHHHTTTGGGGS-H.HHHHHHHHHHHHHHHHH CS
  vATP-synt_AC39   1 leArvramrsglLteedyenLlqcesledvkryLketdYgnfladelseplsrsdiekalreklarefnklreqapgpsrefldyllyrydidNv 95 
                     +e++vr++r++lLt + y+nL+qce+++d+k++L  + Yg+fla+ ++ + s+s++ ++ ++kl++ef+++r++a+g++ +f+dy++y+y+idNv
      CCE26882.1  13 VEGIVRGYRNSLLTGSSYNNLTQCETIDDLKLQL-GPAYGDFLASLPP-NPSTSSLAAKTTDKLVSEFRYVRANAVGSLAQFMDYVTYGYMIDNV 105
                     589*******************************.589*********8.5666*************************55*************** PP

                     HHHHHHHHH.T--GGGS-..--.S..S.SS-HHHHHHHHHSSSHHHHHHHHH.T-HHHHHHHH.H....HCC...--SHHHHHHHHHHHHHHHHH CS
  vATP-synt_AC39  96 klllrgklsgdldleeleeklhpl..g.elsaldldklieaksveelyeall.gtpyakylee.a....ldeleetgdleiienaLdkayledll 181
                      ll++g+l++ +d +el+e++hpl  + +++ l++     a+++eely+++l +tp+a+y++  +    ldel++    ei++n+L+k+yled++
      CCE26882.1 106 ALLITGTLHE-RDTRELLERCHPLgwFeTMPVLCV-----ATNIEELYNSVLiETPLAQYFKGsLshqdLDELNI----EIVRNTLYKNYLEDFY 190
                     *********6.666************88*******.....***********************66*9999999*9....**************** PP

                     HHHHT....SS-HH...HHHHHHHHHHHHHHHHHHHTTTSS......T...--SS-S--HHHHHHHHTT-G.....GG..GGSSTSSTTGGGTT- CS
  vATP-synt_AC39 182 kfckk....lggetaeilreilgfeiDlrniniilrskkygelskedrkkllipggslypeglealaeaedveellaal.kyteygelleealee 271
                     kf+++    +g +tae+++eil+fe+D+r+ini+l+s++ +el k+dr+kl++ +g+l peg+ +l++a+dve ++ a+    +y++++++a   
      CCE26882.1 191 KFINShpemVGTPTAEVMSEILEFEADRRAINITLNSFG-TELAKADRNKLYPGFGKLFPEGTLMLSRADDVEGVRLAVdGVHDYKSFFDAAS-L 283
                     **66633335588**************************.99************************************************654.2 PP

                     ............-S.HHHHHHHHHHHHHHHHHTTTSSSTSTHHHHHHHHHHHHHHHHHHHHHHHHHHT--SHHHHGG CS
  vATP-synt_AC39 272 ............agslksledaldealvkllkkafrqqfsvgvfyaYlklkeqEirnlrwIaegiaqglpkekIrey 336
                                 a++ k+led++++ ++++ k af+ qf+++++ya++kl+eqEirn++wIae+iaq+ +k++I +y
      CCE26882.1 284 ggssgpgnmgggASDGKTLEDMFYQKEMEISKAAFTRQFTFAIVYAWVKLREQEIRNITWIAECIAQN-QKDRIGNY 359
                     5999*******6444*****************************************************.*****886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2619.28
//
Query:       CCE26883.1  [L=602]
Description: probable nucleolar protein NOP58 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-80  269.2   0.3    5.5e-80  268.1   0.3    1.6  1  Nop         snoRNA binding domain, fibrillarin
    1.1e-21   77.0   2.5    5.3e-21   74.8   2.5    2.3  1  NOP5NT      NOP5NT (NUC127) domain
  ------ inclusion threshold ------
      0.019   15.3   4.5      0.019   15.3   4.5    3.0  3  PBP1_TM     Transmembrane domain of transglycosylase PBP1 at 


Domain annotation for each model (and alignments):
>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.1   0.3   9.2e-84   5.5e-80       1     230 []     171     406 ..     171     406 .. 0.95

  Alignments for each domain:
  == domain 1  score: 268.1 bits;  conditional E-value: 9.2e-84
                 HHHHHHHHHHHHHHHHHHHHTTTSTCHHHHS-SHHHHHHHHHHCCCCHCCT.HHTT.HHHHHHHHHHHHCHHHH-SSS-S-HHHHHHHHHHHHHHHHHH CS
         Nop   1 lldeidkeintlhkrvrewYswhFpELeslvkdnleYakvvkligneredlekkeedeelakevimaakvtastsmgaelseedlknikelcdrvlele 99 
                 lld++dke+n +++r +ewY+whFpE++++++dnl+Ya+v+ ++g  r+++++++ +e l++ev  a+k +a+ smg+e+ eedl+nik l+++v++ +
  CCE26883.1 171 LLDDMDKELNVYAMRTKEWYGWHFPEMAKILNDNLAYARVIIAVG-MRTNVSDTDLSEILPEEVEVAIKAAAEISMGTEIMEEDLENIKLLAEQVIRYS 268
                 689******************************************.99***88854444999999999999999************************* PP

                 HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHSSHHHHHCS-HHHHTTTT-HHHHCCCHH.T---SSSCHHHCSHHHHHTS-CCCHHHHHHHHH CS
         Nop 100 elrkelleYlesrmsaiAPNlsaLvGeevaarLishaGgLtnLakmPastiqilGaekalfralk.kkntpkyGliyhselvqkatppklkkkiaRlla 197
                 e+r el++Yle+rm+aiAPNlsaLvG  v+arLi+haG+L nLak P stiqilGaekalfralk k++tpkyGliyhs+l+++a + ++k+kiaR+la
  CCE26883.1 269 EYRAELSSYLENRMRAIAPNLSALVGYLVGARLIAHAGSLINLAKSPGSTIQILGAEKALFRALKtKHDTPKYGLIYHSSLIGQA-TGRNKGKIARMLA 366
                 *****************************************************************888***************77.99*********** PP

                 HHHHHHHHHH.......HTT----SHHHHHHHHHHHHHHH CS
         Nop 198 aKvalaaRiD.......afsekdgslGkklreeiekklkk 230
                 aK+al  R+D       +  e+++ lG + r ++e++l+k
  CCE26883.1 367 AKTALGLRVDalgdldeEDDEERAMLGLSARIKLENRLRK 406
                 **********999987544455599************986 PP

>> NOP5NT  NOP5NT (NUC127) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   2.5   8.8e-25   5.3e-21       1      65 []       4      67 ..       4      67 .. 0.99

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 8.8e-25
      NOP5NT  1 fiLfEtaaGYaLfkvkdkkllkkddlvkdsvsdlekfsklvkLkaFqkFesaaeALenanaiseG 65
                f+L Et+aGY+Lfk+ dkkl+k++dl+++ +  +ek+++++kLk+F+kF+saa+ALe+a+++ eG
  CCE26883.1  4 FVLAETPAGYGLFKAADKKLFKNEDLAAE-LGRPEKLVEMLKLKKFVKFDSAATALEEAASLKEG 67
                9****************************.**********************************9 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.59   3.5e+03      45      55 ..     380     391 ..     373     406 .. 0.62
   2 ?   15.3   4.5   3.2e-06     0.019      17      64 ..     458     505 ..     452     519 .. 0.75
   3 ?    2.7   7.4     0.028   1.7e+02      42      69 ..     572     597 ..     542     601 .. 0.49

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.59
     PBP1_TM  45 Ddd.dddeeeev 55 
                 D d +ddee+ +
  CCE26883.1 380 DLDeEDDEERAM 391
                 444244555444 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.2e-06
     PBP1_TM  17 kakparkkasrrrrrdddyddeyddeedDdddddeeeevprkgkkkkp 64 
                 ++k++++k+++  + ++d dde++d edDd ddd   +  + +k ++ 
  CCE26883.1 458 SKKSKKEKKAKIEVVQEDSDDEMKDAEDDDSDDDGTTPANKVAKLSSA 505
                 445566677777788***********9999999998888777666554 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.028
     PBP1_TM  42 eedDdddddeeeevprkgkkkkpprkkr 69 
                 + + dddd+ +   ++k  +k++++kkr
  CCE26883.1 572 KRKHDDDDEADAAEAKK--EKRQKKKKR 597
                 22222233333333444..344334443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1795  (0.100117); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.43
# Mc/sec: 4236.63
//
Query:       CCE26884.1  [L=453]
Description: related to stomatin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-28  100.3   2.1    1.8e-28   99.8   2.1    1.2  1  Band_7    SPFH domain / Band 7 family
  ------ inclusion threshold ------
      0.016   14.9   0.2       0.03   14.0   0.2    1.5  1  Band_7_1  SPFH domain-Band 7 family


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   2.1     2e-32   1.8e-28       3     177 ..     183     351 ..     181     356 .. 0.94

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 2e-32
      Band_7   3 ieegevgvvvrfGklsrvlepGlhfilPfgrsvtvvsvrvqtldvsvsltvptkDglpvtidvtviyrvpddapklvaaveresanldnlirrvlesal 101
                 +++g+vg+v+ fG+ ++ ++pGl  i+P+ +++ +++v++qt +v+  +t++tkD+++++++++++y++   +  +++    ++ n+++ + + ++ +l
  CCE26884.1 183 VHQGNVGLVTKFGRFYKAVDPGLVKINPLSEKLLQIDVKIQTSEVPE-QTCMTKDNVNLRLTSVIYYHI-VAPHIAAF----GISNVRQALLERTQTTL 275
                 89*********************************************.*********************.55555555....55*************** PP

      Band_7 102 revisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaeaqaeiaraeae 177
                 r+vi+ + l+++++ ree+a+ +++ + + ++++Gv+v++  i+di +++e++++l +++++ +  + ++  a+ae
  CCE26884.1 276 RHVIGARILQDVIERREEIAASIREIIEDVAAGWGVQVESMLIKDIIFSQELQESLSMAAQSKRIGESKVIAAKAE 351
                 *************************************************************999997777777766 PP

>> Band_7_1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   3.4e-06      0.03     128     208 ..     258     336 ..     240     339 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.4e-06
    Band_7_1 128 fdteeiseqlkslivtrlsdvlaeskipvldlaakseelaeklkealkeelaeyGlelekleienislpeevekaldkras 208
                 f  +++ + l +  +t+l +v++     + d+  + ee+a+ ++e +++  a  G+++e++ i++i + +e+++ l+ +a+
  CCE26884.1 258 FGISNVRQALLERTQTTLRHVIGARI--LQDVIERREEIAASIREIIEDVAAGWGVQVESMLIKDIIFSQELQESLSMAAQ 336
                 56666777777777777777776543..46888999**************************************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3472.14
//
Query:       CCE26885.1  [L=476]
Description: related to anaphase promoting complex subunit 10 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-46  155.8   0.0    1.7e-45  155.0   0.0    1.3  1  ANAPC10         Anaphase-promoting complex, subunit 10 (APC10
  ------ inclusion threshold ------
        1.3    8.9  17.8        2.4    8.1  17.8    1.3  1  TFIIA           Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> ANAPC10  Anaphase-promoting complex, subunit 10 (APC10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.0   1.9e-49   1.7e-45      20     160 ..     248     396 ..     227     409 .. 0.90

  Alignments for each domain:
  == domain 1  score: 155.0 bits;  conditional E-value: 1.9e-49
     ANAPC10  20 r....dlreigkeavwsvsSakpgngvellrddnldtyWqsdgsqPHlvniqfqkktevkavalyvdyklDeSYtPskirvraGtgfndlkevkkvdle 114
                       l+ei++  +++vsS kpg gve+lr d+l  +Wqsdg qPH   + f k++ ++++  yvd + DeSYtP ki  ++Gt+ n+l e + + l+
  CCE26885.1 248 DpadiGLKEISNLGRFTVSSHKPGSGVEELRSDDLKVFWQSDGPQPHKLTVYFVKRVGIRDIRFYVDCNEDESYTPTKIAFQSGTSENNLLEFASMTLD 346
                 333336889****************************************************************************************** PP

     ANAPC10 115 eptGWvkislk....darekllrvfllqiavlsnhqnGrdthvrqikiyg 160
                  ptGW +++l+    ++++++l  ++lq+++l+n+qnG+dth+r ikiy+
  CCE26885.1 347 SPTGWQQVPLAgvggEPDGNTLVSYVLQMQILENQQNGKDTHLRGIKIYA 396
                 ***********99997889******************************8 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  17.8   0.00027       2.4     146     339 ..      20     239 ..       3     252 .. 0.38

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00027
       TFIIA 146 v..qasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqq.lekqqqqqqqqqqqqqqqqvqqqqqe.esqqaqqasqeqvagsqves 240
                    +++g qq+ ++   q+    q+++  +++  ++++    +a+a p  +  ++qq+q q+++q+q+q+q q+q q   + +aq ++qeqv+++ ++ 
  CCE26885.1  20 AspETEGMQQRPSRRPRQQ----QEENPDATIVTPESGVLRYSAQAAPPLRrEHPQQRQNQRRNQHQHQNQNQNQGQDrDPDRAQAQEQEQVTPEISHR 114
                 1235555555555555555....5555555566666663333444444444233222222222222222222222222322222222334555545555 PP

       TFIIA 241 sqtdgaedaleeespv.......legelsaeeeagaqkeelsreeidrire.........ealkakelekeskkkkraeessladlseilqlDGagdds 323
                 +++ g  ++ +   p+       + ++l ++++ +a   ++  e  d+  e          a +                ++++d+++ + +D ++  s
  CCE26885.1 115 TPNRGFGEDGS---PLgvagvapHPFRLHRTSSYTATRLSMPYESDDSGSEpdvsilamaRARR----------------TAMMDQQRRAAYDMEAGPS 194
                 55555542222...22222334544555555555554444444333333334444444331111................2223333333333333333 PP

       TFIIA 324 de..............................eeeeeesdedsdse 339
                 +                               e e +e++ed d++
  CCE26885.1 195 QApyedehtgigvaedeaaegtrggeglgerrE-ERQEEEEDGDED 239
                 333333333333333333346666666654431.222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1344  (0.0749624); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.40
# Mc/sec: 3528.34
//
Query:       CCE26886.1  [L=497]
Description: uncharacterized protein CPUR_00355 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00038   20.0   0.9     0.0015   18.0   0.9    1.9  1  Fringe           Fringe-like
     0.0078   16.7   0.1      0.019   15.5   0.1    1.7  1  Glyco_tranf_2_4  Glycosyl transferase family 2
  ------ inclusion threshold ------
      0.014   15.2   0.1       0.05   13.4   0.1    1.9  1  Galactosyl_T     Galactosyltransferase
      0.083   12.7   0.3       0.22   11.4   0.3    1.7  1  PAN_3            PAN-like domain


Domain annotation for each model (and alignments):
>> Fringe  Fringe-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.9   3.3e-07    0.0015      74     121 ..     196     242 ..     156     287 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.3e-07
      Fringe  74 kmsaeydafleskkkWfchvDDDnylnveaLlklLskynhtqdvylGk 121
                    ae+   ++ +  W++ vD D+y+  +++++ L++ ++++  y+G 
  CCE26886.1 196 H-MAEKAYRMRPDYDWYLFVDADTYVVYPTMMEWLKNLDPQKPHYIGS 242
                 3.456668889999*********************************6 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   4.2e-06     0.019      51      90 ..     186     227 ..     114     232 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.2e-06
  Glyco_tranf_2_4  51 syederrqvellkallarya.eadwvlvvDaDEflvvpds.r 90 
                       ++  ++++ ++ + + r + + dw l+vDaD ++v+p++ +
       CCE26886.1 186 GWNLDKYKNIHMAEKAYRMRpDYDWYLFVDADTYVVYPTMmE 227
                      33334444444455555555256***************9854 PP

>> Galactosyl_T  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.1e-05      0.05      64     118 ..     191     243 ..     181     252 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.1e-05
  Galactosyl_T  64 tlKtltlllwavskvpeaklilkvDdDvyvnpdkLlsllkrelidpsessvygkv 118
                    +K + + + a  + p ++ +l vD D yv  +++++ lk+   dp++    g v
    CCE26886.1 191 KYKNIHMAEKAYRMRPDYDWYLFVDADTYVVYPTMMEWLKNL--DPQKPHYIGSV 243
                   589999999*******************************99..88887777665 PP

>> PAN_3  PAN-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   4.9e-05      0.22      12      37 ..     410     435 ..     403     446 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.9e-05
       PAN_3  12 ystssttseswddCvqkCledstCil 37 
                 ++++ +   s+ddC + Cl+ ++C+ 
  CCE26886.1 410 NDEEAVAWRSFDDCRNACLSRDDCFQ 435
                 5667778889**************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3898.24
//
Query:       CCE26887.1  [L=147]
Description: uncharacterized protein CPUR_00356 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0041   17.5   0.3     0.0063   17.0   0.3    1.2  1  NPV_P10       Nucleopolyhedrovirus P10 protein
      0.006   16.6   2.5     0.0086   16.1   2.5    1.2  1  TMF_DNA_bd    TATA element modulatory factor 1 DNA binding
  ------ inclusion threshold ------
      0.019   15.1   0.4      0.024   14.7   0.4    1.1  1  ADIP          Afadin- and alpha -actinin-Binding
      0.024   14.2   0.5       0.03   13.9   0.5    1.1  1  PspA_IM30     PspA/IM30 family
      0.025   14.0   2.0      0.034   13.6   2.0    1.1  1  DUF3552       Domain of unknown function (DUF3552)
      0.028   14.4   1.4      0.048   13.6   1.4    1.3  1  Sugarporin_N  Maltoporin periplasmic N-terminal extension
      0.032   14.9   0.3      0.058   14.0   0.3    1.5  1  SlyX          SlyX
      0.035   14.6   1.2       0.05   14.1   1.2    1.3  1  C1ORF64       Steroid receptor-associated and regulated prote
       0.05   13.8   0.1      0.072   13.3   0.1    1.2  1  Spc24         Spc24 subunit of Ndc80
      0.056   12.3   0.2      0.067   12.1   0.2    1.1  1  Spc7          Spc7 kinetochore protein
      0.058   13.4   0.1      0.074   13.1   0.1    1.1  1  Laminin_II    Laminin Domain II
      0.066   11.4   0.0      0.075   11.2   0.0    1.0  1  EzrA          Septation ring formation regulator, EzrA
      0.091   13.0   0.1       0.11   12.7   0.1    1.1  1  DUF2163       Uncharacterized conserved protein (DUF2163)
       0.11   12.4   0.5       0.15   12.0   0.5    1.1  1  Prefoldin     Prefoldin subunit
       0.12   12.7   0.5       0.71   10.2   0.5    1.9  1  BLOC1_2       Biogenesis of lysosome-related organelles compl
       0.16   12.1   5.9      0.063   13.5   3.4    1.4  2  ATG16         Autophagy protein 16 (ATG16)
       0.23   11.6   2.0       0.32   11.1   0.4    1.8  2  Med9          RNA polymerase II transcription mediator comple
       0.63   10.4   3.6       0.21   12.0   1.0    1.5  2  RIC3          Resistance to inhibitors of cholinesterase homo


Domain annotation for each model (and alignments):
>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.3   6.3e-06    0.0063      11      74 ..      30      90 ..      26      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.3e-06
     NPV_P10 11 adikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLnpdevPdlp 74
                 di  +d+ V+ l+q+v++ +en+ ++   +++L ++ a L e+e+ ++  + +  p  +P +p
  CCE26887.1 30 GDIFRIDNSVSDLDQKVKQRRENVGKT---TQELAELEARLREMEQRLNRNKGVVQPASLPLVP 90
                69999*****************99884...5999999********9999999998877777766 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   2.5   8.6e-06    0.0086      32      72 ..      36      76 ..      33      78 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.6e-06
  TMF_DNA_bd 32 nntikkLrkknkelekeikelkkkleklekeleeleerlke 72
                 n+++ L++k+k+  +++ +++++l++le  l e+e+rl +
  CCE26887.1 36 DNSVSDLDQKVKQRRENVGKTTQELAELEARLREMEQRLNR 76
                58999*********************************987 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.4   2.4e-05     0.024      61     119 ..      24      82 ..      15      85 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-05
        ADIP  61 tirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelq 119
                   ++   +i r  ++++ l+++++q +  +   ++++++le++l++ eq l++ k  +q
  CCE26887.1  24 SFSQELGDIFRIDNSVSDLDQKVKQRRENVGKTTQELAELEARLREMEQRLNRNKGVVQ 82 
                 55566667777788888888888888888888888888888888888888888777665 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.5     3e-05      0.03      97     136 ..      36      75 ..      19      82 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3e-05
   PspA_IM30  97 ekqaealetqlaqqrsaveqlrkqlealetkieelkakke 136
                  +++ +l+++++q r+ v + +++l++le++++e+++  +
  CCE26887.1  36 DNSVSDLDQKVKQRRENVGKTTQELAELEARLREMEQRLN 75 
                 5566666666666666666666666666666666666543 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.0   3.4e-05     0.034      78     122 ..      37      81 ..      27      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.4e-05
     DUF3552  78 nelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsl 122
                 n ++ l+++++q+ e++ + +++l + e++l+e e++l++++  +
  CCE26887.1  37 NSVSDLDQKVKQRRENVGKTTQELAELEARLREMEQRLNRNKGVV 81 
                 678899*******************************99987665 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.4   4.8e-05     0.048      32      48 ..      60      76 ..      56      84 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.8e-05
  Sugarporin_N 32 LaaLEkrLqeAeqraqa 48
                  La LE+rL+e eqr+++
    CCE26887.1 60 LAELEARLREMEQRLNR 76
                  66666666666666654 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   5.8e-05     0.058      16      59 ..      36      79 ..      31      98 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.8e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXX CS
        SlyX 16 edtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgasea 59
                ++ + +L++ v + ++ + + +++l++l+ rl+e+e++ ++++ 
  CCE26887.1 36 DNSVSDLDQKVKQRRENVGKTTQELAELEARLREMEQRLNRNKG 79
                67788999999999999999999999999999999998876554 PP

>> C1ORF64  Steroid receptor-associated and regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.2     5e-05      0.05      55     119 ..      51     115 ..      45     133 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5e-05
     C1ORF64  55 enqprltqeislgggalaqardtLppcrgtvapasspvsplcpqeapeakgsplkavptrssawg 119
                 en  ++tqe++  + +l + ++ L   +g+v+pas+p  p ++   p ak+++ k+ p   +a +
  CCE26887.1  51 ENVGKTTQELAELEARLREMEQRLNRNKGVVQPASLPLVPNVAPPPPPAKDESNKSRPGTARASQ 115
                 677789*************************************************9988766655 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   7.2e-05     0.072       7      48 ..      33      74 ..      30      89 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.2e-05
       Spc24  7 friakelsdleselesleselaelkeeleeleeeseekeser 48
                fri +++sdl++++++ +++  +  +el+ele    e e+++
  CCE26887.1 33 FRIDNSVSDLDQKVKQRRENVGKTTQELAELEARLREMEQRL 74
                888999999999999999777777777777777777743333 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   6.8e-05     0.067     218     262 ..      35      79 ..      16      84 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.8e-05
        Spc7 218 kkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckg 262
                   + +++l +++++ +e++ +++++ +ele++++e e+ l+++kg
  CCE26887.1  35 IDNSVSDLDQKVKQRRENVGKTTQELAELEARLREMEQRLNRNKG 79 
                 444555555555555555555555555555555555555555554 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   7.5e-05     0.074      39      85 ..      31      77 ..      11      85 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.5e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH. CS
  Laminin_II 39 sveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeas 85
                ++ ++++ v+d+ + +++ r++v k ++++ +L+++l+e++q+ + +
  CCE26887.1 31 DIFRIDNSVSDLDQKVKQRRENVGKTTQELAELEARLREMEQRLNRN 77
                44556888999999999999999999999999999999999987765 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.5e-05     0.075     380     440 ..      31      91 ..      11      93 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.5e-05
                 GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SS-S-TT CS
        EzrA 380 eleeleekleeieekqeeileslkslrkdEkrAreqldeikkelkeikrkieksnLPgiPe 440
                 ++ +++++++++++k+++ +e++++  ++ ++ + +l e++++l+  k  ++   LP +P+
  CCE26887.1  31 DIFRIDNSVSDLDQKVKQRRENVGKTTQELAELEARLREMEQRLNRNKGVVQPASLPLVPN 91 
                 5556788888888888888888888888888888888899999999898899999999986 PP

>> DUF2163  Uncharacterized conserved protein (DUF2163)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00011      0.11     105     144 ..      40      79 ..       4      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
     DUF2163 105 edpeqrvllfrgrlgevrrsggaftaelrglaeaLqqpvg 144
                 +d +q+v+++r ++g+ +++ ++++a lr + ++L+++ g
  CCE26887.1  40 SDLDQKVKQRRENVGKTTQELAELEARLREMEQRLNRNKG 79 
                 56889********************************988 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   0.00015      0.15      75     117 ..      35      77 ..      33      79 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  75 leeAiellkkkleelekqlekleeeleklkdqittleanlaql 117
                 +++++  l++k+++ ++++ k ++el++l +++ ++e+ l+++
  CCE26887.1  35 IDNSVSDLDQKVKQRRENVGKTTQELAELEARLREMEQRLNRN 77 
                 7888999*******************************99875 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.5   0.00071      0.71      42      79 ..      35      72 ..      18      76 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00071
     BLOC1_2 42 vaaslekkleklnekyeelqpylqqidqiekqvteLee 79
                + +s+++  +k++++ e++ +  q++ ++e++++e+e+
  CCE26887.1 35 IDNSVSDLDQKVKQRRENVGKTTQELAELEARLREMEQ 72
                44555555567777777999999999999999999987 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.4   6.4e-05     0.063      93     154 ..      21      82 ..      13      85 .. 0.79
   2 ?   -2.1   0.0       3.8   3.8e+03      56      64 ..     100     108 ..      81     128 .. 0.47

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.4e-05
       ATG16  93 lyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvq 154
                 + +s ++    + +  +++++l++k k+++e++ + ++e a+le +l++ e++l+  + +vq
  CCE26887.1  21 VARSFSQELGDIFRIDNSVSDLDQKVKQRRENVGKTTQELAELEARLREMEQRLNRNKGVVQ 82 
                 55555566666777888999999999999999999999999999999999999988877776 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.8
       ATG16  56 ksakekeas 64 
                 k+++ k++ 
  CCE26887.1 100 KDESNKSRP 108
                 111111111 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   0.00032      0.32      38      78 ..      22      65 ..      20      67 .. 0.93
   2 ?    2.8   0.4      0.12   1.2e+02      53      68 ..      61      76 ..      55      83 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
        Med9 38 arelirelpg...idrsveeqeaeieeleeqlakKrelLkkykn 78
                ar+  +el +   id sv + ++++++ +e++ k  + L+++  
  CCE26887.1 22 ARSFSQELGDifrIDNSVSDLDQKVKQRRENVGKTTQELAELEA 65
                899999*******************************9999876 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.12
        Med9 53 eeqeaeieeleeqlak 68
                +e ea+++e+e++l +
  CCE26887.1 61 AELEARLREMEQRLNR 76
                3334444444444444 PP

>> RIC3  Resistance to inhibitors of cholinesterase homologue 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.0   0.00021      0.21     107     142 ..      44      76 ..      27      77 .. 0.76
   2 ?   -2.5   0.1       6.3   6.3e+03      41      45 ..     106     110 ..      88     131 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00021
        RIC3 107 kakkkakenakkkteteeeLeeLqerLaeTEramek 142
                 ++ k+++en+ k+t+   eL+eL+ rL+e E+ +++
  CCE26887.1  44 QKVKQRRENVGKTTQ---ELAELEARLREMEQRLNR 76 
                 344555666666655...**************9986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.3
        RIC3  41 qraav 45 
                 +r++ 
  CCE26887.1 106 SRPGT 110
                 22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1349  (0.0752412); expected 358.6 (0.02)
Passed bias filter:                     1020  (0.0568911); expected 358.6 (0.02)
Passed Vit filter:                       231  (0.0128842); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1052.82
//
Query:       CCE26888.1  [L=413]
Description: related to aspartic proteinase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-52  178.7   0.0    2.2e-52  178.4   0.0    1.0  1  Asp              Eukaryotic aspartyl protease
    6.7e-10   39.5   0.1    5.3e-08   33.3   0.0    2.5  2  TAXi_N           Xylanase inhibitor N-terminal
    0.00064   20.3   0.1          6    7.6   0.0    3.4  3  Asp_protease_2   Aspartyl protease
     0.0013   19.3   0.0        4.7    7.9   0.0    3.0  3  gag-asp_proteas  gag-polyprotein putative aspartyl protease
     0.0042   16.9   0.0      0.015   15.1   0.0    2.0  2  TAXi_C           Xylanase inhibitor C-terminal
  ------ inclusion threshold ------
      0.077   12.9   0.0       0.14   12.1   0.0    1.4  1  MoaF             MoaF N-terminal domain


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.4   0.0   7.4e-56   2.2e-52       2     314 ..      87     407 ..      85     408 .. 0.90

  Alignments for each domain:
  == domain 1  score: 178.4 bits;  conditional E-value: 7.4e-56
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTEST..SHCHHTSS-B-GGG-TT-E.EEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckk..ssackshstydpskSstyk.kngkslsisYGdg.svsGflsqdtvkvggltvknqefgeatke 96 
                 ++++++iGtp+qk ++i+DTGSsd+WV s+++    + +      y p +S t++  +++ ++++Y dg s++G++++d v +gg  ++n ++++a  +
  CCE26888.1  87 FVTDVEIGTPPQKVKMILDTGSSDVWVQSTDTIYrdNDDGPWAPQYMPDSSETAQrIDNAVWEVKYLDGsSAEGIVYRDDVRLGGFHIPNATIESAMLM 185
                 4689*************************9965434667888999******99994677788************************************* PP

                 SSHHHTTSSSSEEEE-S-GGGSCGG.SCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS.TSSTEEEEEEEEETTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
         Asp  97 pgstflaakfdGiLGlgfkeisvee.atpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts.kgywqielesvtvggktv 193
                  + +  +++++G+LGl+ +  ++ +  tp f  +  q  +++p+f+v l    ++ +   fG++Des  + ++t+++    +  w+i+l+  +  +k  
  CCE26888.1 186 ASRFEFDVNVSGVLGLAKQLPNTIRpPTPSFLSV-LQSYLHRPIFTVDLR--RDTASRFDFGYIDESIPSDNITWLKSRFdSPHWDIDLDLTSWADKHP 281
                 *****************88766666588888885.5779**********6..78899*******************98875778********9999887 PP

                 .EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEET..TCEEEEETTGGGGSEEEEEEE..TTEEEEEEGGGGEEEESSSTTSEEEESEEECCTSS CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 194 .lcssgcqailDtGTsllalptsivekiakaigakkses..egeyvvdCdslsslpdisfti..ggakitvpvselvlkeeeseesqCilglvseeegd 287
                  +    +qa lDtGTsl+ lp+  ++++++ i +   +s  +  y + C++ s+lpd+ f++   ++ i+vp   l +   +se ++C  g++s  +  
  CCE26888.1 282 vWMYLPFQATLDTGTSLMFLPDALASRYWHSIPGVRGNStlSLAYKFPCAQASTLPDLMFKLpgTEHVIRVPGPYLNYGTIDSEPGYCWGGMQSALSLG 380
                 69999*************************9976554442347899****************65567799**********************999**** PP

                 SEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 288 lwiLGdvFlrsayvvfdldnnrvglAe 314
                 + +LGdv l+ ++vvfd++nnr+glA+
  CCE26888.1 381 VSVLGDVMLKAIFVVFDVQNNRIGLAN 407
                 *************************96 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.8e-11   5.3e-08       1     141 [.      87     204 ..      86     233 .. 0.74
   2 ?   -3.3   0.0       3.1   9.2e+03      13      27 ..     287     301 ..     286     305 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.8e-11
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgssssGvlatd 99 
                 +++ ++iGtppq++k+++DtGs+ +Wvq             +++ ++ +     p + +         s++ +++ ++   e++y  dgss++G + +d
  CCE26888.1  87 FVTDVEIGTPPQKVKMILDTGSSDVWVQS------------TDTIYRDNDDG--PWAPQYM-----PDSSETAQRIDNAVWEVKYL-DGSSAEGIVYRD 165
                 5789*************************............22223222222..2222222.....34556667788899999996.999********* PP

      TAXi_N 100 tltlsstdgksvkvpnlvfGCgk..snlgglaagadGilGLGrg 141
                  ++l     ++ ++pn ++  +    +  ++  +++G+lGL+++
  CCE26888.1 166 DVRL-----GGFHIPNATIESAMlmASRFEFDVNVSGVLGLAKQ 204
                 ****.....667777777776663222334445799***99975 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.1
      TAXi_N  13 plklvvDtGsdltWv 27 
                 p+++++DtG +l+ +
  CCE26888.1 287 PFQATLDTGTSLMFL 301
                 68899****999875 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0     0.002         6       8      24 ..      98     114 ..      89     121 .. 0.80
   2 ?    2.3   0.0      0.09   2.7e+02      44      73 ..     150     179 ..     136     202 .. 0.66
   3 !    6.2   0.0    0.0054        16       9      31 ..     287     309 ..     286     328 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.002
  Asp_protease_2   8 kpvrfllDTGasttlis 24 
                     ++v+++lDTG+s + + 
      CCE26888.1  98 QKVKMILDTGSSDVWVQ 114
                     799*********99876 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.09
  Asp_protease_2  44 vsgaggevkarlvrldslklggltlknvpa 73 
                     v+ ++g++   +v  d+++lgg++++n ++
      CCE26888.1 150 VKYLDGSSAEGIVYRDDVRLGGFHIPNATI 179
                     556788888888888999999999999863 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0054
  Asp_protease_2   9 pvrfllDTGasttlispelaekl 31 
                     p+++ lDTG s ++++++la + 
      CCE26888.1 287 PFQATLDTGTSLMFLPDALASRY 309
                     78999**************9885 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0016       4.7       8      25 ..      98     115 ..      89     121 .. 0.77
   2 ?   -1.2   0.0       1.1   3.2e+03      45      72 ..     151     178 ..     136     201 .. 0.66
   3 !    7.7   0.0    0.0018       5.2       9      44 ..     287     322 ..     285     341 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0016
                      EEEEEEEETT-SS-EEEH CS
  gag-asp_proteas   8 kpvkflvDTGAsstiise 25 
                      ++vk+++DTG s++ +++
       CCE26888.1  98 QKVKMILDTGSSDVWVQS 115
                      589*********998876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
                      EE-TTSTT-EEEEEEEEEE.EETTEEEE CS
  gag-asp_proteas  45 ktangeveakrvrldsvkiggielrnvs 72 
                      k  +g+   + v+ d v++gg+++ n +
       CCE26888.1 151 KYLDGSSAEGIVYRDDVRLGGFHIPNAT 178
                      5556666667777778888888777654 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0018
                      EEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT-- CS
  gag-asp_proteas   9 pvkflvDTGAsstiiseelaerlglsrkedkgkvev 44 
                      p+++ +DTG s ++++++la r   s    +g++++
       CCE26888.1 287 PFQATLDTGTSLMFLPDALASRYWHSIPGVRGNSTL 322
                      799*****************9987666665555555 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2   3.7e+03     136     153 ..     177     194 ..     172     199 .. 0.80
   2 !   15.1   0.0     5e-06     0.015      77     159 ..     325     405 ..     289     407 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                 EEE-HHHHBTS-EEEETT CS
      TAXi_C 136 vviGglqlednllvFDle 153
                 + i +++l+  +++FD++
  CCE26888.1 177 ATIESAMLMASRFEFDVN 194
                 56778899999*****87 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 5e-06
                 EEETTS......-S----EEEEESSS-.EEEE-GG..GGEEE-SSSEEEE-EEE--S--SSSEEE-HHHHBTS-EEEETTTTEEEE CS
      TAXi_C  77 CynsselgstragpavPtitlvlegga.ewtisge..nllvkveggvvClafvesgvagesavviGglqlednllvFDleksrlgF 159
                  y+       +  +++P++ ++l g +  ++++g   n+    ++  +C + ++s + + + +v+G ++l+ + +vFD++++r+g 
  CCE26888.1 325 AYKFPC----AQASTLPDLMFKLPGTEhVIRVPGPylNYGTIDSEPGYCWGGMQS-ALSLGVSVLGDVMLKAIFVVFDVQNNRIGL 405
                 555555....566788999999998554777776533665666666899999999.889999*********************985 PP

>> MoaF  MoaF N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.8e-05      0.14      48      96 ..      51     108 ..      18     117 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.8e-05
                 EEEEEE.........TTTTEEEEEE-EEEECCTTEEEEEEEETTSTTEEEEEEEETTT CS
        MoaF  48 tlrWte.........eekeesgeaeyeatevregiYfvdflkkereaesvslvldlrt 96 
                 + rW +         +++ + ge  ++a +v ++ Yfv  ++  ++ + v ++ld+ +
  CCE26888.1  51 HSRWGSraskanlpnKSALADGEGSARAHSVLQDQYFVTDVEIGTPPQKVKMILDTGS 108
                 33444466777777788999***********************************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3049.46
//
Query:       CCE26889.1  [L=1013]
Description: related to stress protein ORP150 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-56  190.2   3.3    2.6e-53  181.1   0.2    3.6  4  HSP70      Hsp70 protein
  ------ inclusion threshold ------
       0.14   12.3   0.5        3.1    8.0   0.0    2.9  2  DUF1378    Protein of unknown function (DUF1378)
          7    6.1  10.2        1.2    8.6   6.1    1.7  2  SMYLE_N    Short myomegalin-like EB1 binding proteins, N-term


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.1   0.2   4.4e-57   2.6e-53       1     386 [.      30     460 ..      30     469 .. 0.85
   2 !   19.0   0.4   5.7e-08   0.00034     491     596 ..     668     781 ..     652     784 .. 0.77
   3 ?   -5.9   5.3       1.8   1.1e+04     496     571 ..     821     900 ..     806     936 .. 0.51
   4 ?   -0.8   0.7     0.054   3.2e+02     483     538 ..     952    1008 ..     928    1012 .. 0.79

  Alignments for each domain:
  == domain 1  score: 181.1 bits;  conditional E-value: 4.4e-57
                 EEEEEEXSSEEEEEEEETTEE.EEEXXTTSXSSEESEEEEXT........T..SEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHT.TXSS CS
       HSP70   1 viGiDLGttnsvvavmeggki.evianeegnrttPsvvaFtk........k..erlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeik.elpy 87 
                 v+G+DLGt++   a ++ g + e++  + ++r   s va ++        +  erl G+ A    ++ p ++  ++K l+G   +d+ v++    + + 
  CCE26889.1  30 VLGVDLGTEYIKAALVKPGIPlEIVLTKDSRRKETSAVALKPskaglkagEfpERLYGADAMAVSARFPGEVYPNLKTLLGLPIDDAAVKEYAArHPAL 128
                 79************999875439*********99999998754444444424589*********************************99876515567 PP

                 EEEEETT.SBEEEEEEET..TE.EEEHHHHHHHHHHHHHHHHHHHHTSB..EEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTC CS
       HSP70  88 kvvkken.gkavveveaa..ge.kftpeqisamvLkklketaeaylgkk..vtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGld 180
                 +++++++ g a  +  +   +e  +t e++ am L+ ++++aea  g+   v  +v+tvP++++ ++++a++ A+++AGL+vl +v +  A++l Y   
  CCE26889.1 129 QLTAHSTrGTASFKSGTLspEEdAWTVEELLAMELQSVRKNAEATAGDGsvVRSVVLTVPPFYTLEEKRAVQLAAELAGLKVLSLVSDGLAVGLNYATS 227
                 887775514555554433223369*********************9986669********************************************999 PP

                 CSS.......SCEEEEEEEEXSSXEEEEEEEEET......TEEE.......EEEEEEETTXSHHHHHHHHHHHHHHHHHHH...HSXXG.....GGSHH CS
       HSP70 181 kkd.......kernvlvyDlGggtfdvSilelek......Gvfe.......vkaTagDthlGGedfDealvehlveefkkk...egidl.....skdkk 251
                 ++        k++  +v+D+G g++ +S+l++++      G+f+       v++   D +lGG+     +++ +v++f  +   ++i +     +   +
  CCE26889.1 228 RQFpnisageKPEYHVVFDMGAGSTSASVLRFQSrtvkdiGKFNktvqevhVLGSGWDRTLGGDSLNYLIMDDMVAQFIDSagaQKISAteqgfKAHGR 326
                 887889999999*******************984333334766333333338999**********************9876222444441111145679 PP

                 HHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHT CS
       HSP70 252 alqrlkeaaekaKkeLSsskqteinleietvdedgkdlseklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelf 350
                 a+ +++++ae+++  LS+  +++++ ++e + e ++d++ k++Ra+fe ++e   er+  ++e+a+k ++++ +++ +v+l GG tR P vq+++++++
  CCE26889.1 327 AMAKISKEAERVRHVLSA--NQNTQASFEGLYE-EVDFKYKVTRAEFEAMAEGHAERIGAVMEEAIKASGVDLKDLTSVILHGGVTRTPLVQKALEKAI 422
                 ******************..5666778999999.99*************************************************************** PP

                 T..CHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEE CS
       HSP70 351 g..kepsktvnpDeavaiGAAvqagvlsgeeevkdlll 386
                 g   + +++vn Dea   GA + a+ ls++++vk++ +
  CCE26889.1 423 GsaDKIRSNVNSDEAAVFGAGFRAAELSPSFRVKEIRI 460
                 *8667899***************************987 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 5.7e-08
                 EEEEEEECCSS..SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...GGGSTHHHH......HHHHHHHHHHHCHTTSSCHHH CS
       HSP70 491 eeeitieaseg..lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee...aekvseaek......ekvesaieeLkeeleeeekee 578
                   ei+ e++    ls++e  k+    +++a++dk++ ++ ea n++e + y++++ le e   a    + +k      +k ++  ++L+e ++e+ ++ 
  CCE26889.1 668 PVEIELEKAGVpgLSKAELIKVKDRLKAFAASDKARFQREEALNQLEGYTYKIRDLLESEsfiA---ASTKKerttlaDKASEIGDWLYEDGAEATRDV 763
                 3344444444344999999999999*********************************994432...333335568888999999************** PP

                 HHHHHHHHHHHHHHHHHH CS
       HSP70 579 ieakteelkkvvekiaek 596
                 + ak++ l+ +v ++ ++
  CCE26889.1 764 LVAKLKILQDIVGPVQTR 781
                 *********999888766 PP

  == domain 3  score: -5.9 bits;  conditional E-value: 1.8
                 EECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH....HHHHHHHHHHHCHT CS
       HSP70 496 ieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleeeaekvseaek....ekvesaieeLkeel 571
                 ++as   +s ++ ++  +++++ +++dk++k++ e+k+  e   +++ + +   a   s++e     +  +s++++L++  
  CCE26889.1 821 ATASAAsASGSATDSASSETKADDADDKEAKDTEETKEPKEGEETEA-QPVGPVAPLFSREELteldTLRKSTEAWLQDME 900
                 44444436666667777777777777777777777776544333222.223333333333333122122233334444433 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.054
                  EEETTTCCEEEEEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH CS
       HSP70  483 akdketgkeeeitieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelv 538 
                  ak+k++gk+++   +  ++  + e++e++ k+ +e++ ed   k++ ++k  aee v
  CCE26889.1  952 AKKKTSGKSKKGGSAGGKDgVTPEQMEELLKKIKEMNGEDLFGKDKEDTKTGAEEKV 1008
                  5556666665555544444489999999************99999999999998865 PP

>> DUF1378  Protein of unknown function (DUF1378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00051       3.1      25      49 ..     295     319 ..     289     323 .. 0.90
   2 ?    0.7   0.3     0.099   5.9e+02      25      53 ..     810     839 ..     807     844 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00051
     DUF1378  25 YkviRnyiRrkiDkaaaekisasqs 49 
                 Y ++ +++ + iD a a kisa+++
  CCE26889.1 295 YLIMDDMVAQFIDSAGAQKISATEQ 319
                 889999****************987 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.099
     DUF1378  25 YkviRnyiRrkiDkaaae.kisasqsagsk 53 
                 Ykv+ +y   +  + aa    sa+ sa+s+
  CCE26889.1 810 YKVMAEYEQWQATASAASaSGSATDSASSE 839
                 9******99998877765145788888775 PP

>> SMYLE_N  Short myomegalin-like EB1 binding proteins, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       1.1   6.5e+03     236     256 ..     649     669 ..     617     725 .. 0.49
   2 ?    8.6   6.1    0.0002       1.2     194     324 ..     825     963 ..     818    1005 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.1
     SMYLE_N 236 eespassvesLdtavdvvkpa 256
                 +++pa  v+ ++ ++ v+ p+
  CCE26889.1 649 ASTPAVEVKEVKKKQVVSIPV 669
                 333333333333222222222 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0002
     SMYLE_N 194 siscgpstrysasvgeeeeavselaaaelaeaksssegesle.....eespassvesLdtavdvvkpakkkeeesekeakedeksds...lseekteae 284
                 + s + s+  sas +++ +++ +++a++++e+k+++ege++e       +p  s e L+   +  k++++  +++ek++++ + sd+   l ++ +e +
  CCE26889.1 825 AASASGSATDSASSETKADDADDKEAKDTEETKEPKEGEETEaqpvgPVAPLFSREELTELDTLRKSTEAWLQDMEKKQSKLSGSDNpvlLVKDLSEKT 923
                 56777788889999999999999999************9999766654455556666554444444444444444444444444443111566677888 PP

     SMYLE_N 285 sslsgsklelalsllkaleyrpvksargsklpvlvkskls 324
                 ++l + +l+lal+ +++++ +  k  +++k +   ksk+ 
  CCE26889.1 924 RKLDKMSLDLALKGVRNFDSKTKKASKNAKKKTSGKSKKG 963
                 889999*********************9998887777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1013 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1487  (0.0829383); expected 358.6 (0.02)
Passed bias filter:                      671  (0.0374254); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.47
# Mc/sec: 6493.02
//
Query:       CCE26890.1  [L=462]
Description: uncharacterized protein CPUR_00359 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.043   14.0   6.3       0.64   10.2   0.0    3.3  3  Enolase_N        Enolase, N-terminal domain
      0.049   13.8   0.8       0.13   12.4   0.8    1.7  1  Ribonucleas_3_3  Ribonuclease-III-like
      0.076   12.7   7.8      0.026   14.2   4.2    1.9  2  GrpE             GrpE
       0.27   11.2  20.7        8.5    6.4  15.4    3.6  2  FlxA             FlxA-like protein


Domain annotation for each model (and alignments):
>> Enolase_N  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2    0.0056        25      31      84 ..      23      76 ..      14      99 .. 0.78
   2 ?   10.2   0.0   0.00014      0.64      70     129 ..     195     254 ..     177     255 .. 0.90
   3 ?   -0.4   0.4      0.27   1.2e+03      31      78 ..     278     325 ..     259     336 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0056
                EEE--B-BSSSSSS-B----SSTTSGGGT--HHHHHHHHHTHHHHHTTSBTT-H CS
   Enolase_N 31 raavpsGaStgekealelrDgdkkrylgkgvekavenvnekiapaligldvtdq 84
                ++   s  S g++ a + +D+  +    + ++k ++n n+ki++a    ++++q
  CCE26890.1 23 ESVKSSASSAGSATATDRQDEGYESPYIRELQKNIRNLNKKITNASKTDSILSQ 76
                455567778999****999965555556899***********998765555555 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00014
                 HTHHHHHTTSBTT-HHHHHHHHHHHH-STT-TTT-HHHHHHHHHHHHHHHHHHHTS-HHH CS
   Enolase_N  70 ekiapaligldvtdqeeiDkllielDgtenksklGaNailavSlAvakaaAkakelplyr 129
                 + i+  l+ +   d +++ ++l  + gt++k    +  +l +S A++k  A++++ ply+
  CCE26890.1 195 QAIEGVLMAIYTGDDNAVSSMLKLVHGTDDKVLNVSGETLQTSYAIVKSLAEESRSPLYE 254
                 5567777888889999****************99999**********************7 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.27
                 EEE--B-BSSSSSS-B----.SSTTSGGGT--HHHHHHHHHTHHHHHTT CS
   Enolase_N  31 raavpsGaStgekealelrD.gdkkrylgkgvekavenvnekiapalig 78 
                    +  GaSt  ++a+   + + + + +g+g ++ v  v+   a+al +
  CCE26890.1 278 ATEAAGGASTVGTQAVSHLNgQVNGHVNGEGPTNDVT-VTGDAAKALAE 325
                 4456678999888888776624466778888887774.66666666654 PP

>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.8   2.9e-05      0.13      46     112 ..     135     209 ..      92     219 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.9e-05
  Ribonucleas_3_3  46 ekdegeltklraslvseesl..aeiA..kelgLgkvlrl....rkgeeetegsgrekvladaleAliGAiyldkg 112
                      ++ e++l k++a+ vs+ ++  ++    + l L+++lrl    r++  ete++++++  ++a+e+++ Aiy   +
       CCE26890.1 135 AEWEKSLEKDKADAVSKAQIgfQQSLrdSFLTLSQFLRLaayrREEASETESEENQSTESQAIEGVLMAIYTGDD 209
                      23455666777777777666322222002356*********9655556688999999**************7554 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.29   1.3e+03      12      30 ..      48      66 ..      18      78 .. 0.63
   2 ?   14.2   4.2   5.8e-06     0.026       6      94 ..      94     199 ..      88     231 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.29
                HHHCCCCCCTTCHHHCTTS CS
        GrpE 12 deeeeleeeleelekevke 30
                + + el++++ +l+k++ +
  CCE26890.1 48 PYIRELQKNIRNLNKKITN 66
                3344444444444444433 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 5.8e-06
                 .CTTTHHHHCCCCCCTTCHHH...CTTSCCCCCC.TTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC.........HHH-HH.... CS
        GrpE   6 eeeeeedeeeeleeeleelek...evkelkekll.rllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksak.......eneeek.... 89 
                 +++++ +++ +l+++l +le+   ++++++e++  r+ ae  + +k +ek+k++a ++a   f ++L + +  l+  l  a        e+   +    
  CCE26890.1  94 DQKAQIEKKPALQAQLVQLEEqlvQYQKIHEQYRsRAVAEKAEWEKSLEKDKADAVSKAQIGFQQSLRDSFLTLSQFLRLAAyrreeasET---Eseen 189
                 57788888889999988888855566777777767999*********************99999999999888887777766554443322...13344 PP

                 .....HHHHH CS
        GrpE  90 .....slleG 94 
                      + +eG
  CCE26890.1 190 qstesQAIEG 199
                 4444433333 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  15.4    0.0019       8.5       3      97 ..      34     151 ..      27     154 .. 0.61
   2 ?   -0.3   0.2      0.23     1e+03      74      90 ..     179     195 ..     168     203 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0019
        FlxA   3 sssasssssssgsasqiasLqkQiknlqkqLkelses.......deltkeekk....................kqqqliqaQIqqlqaQIaqlqqqqae 74 
                 s +a++ + +   + +i++Lqk i nl+k++ + s++                                    +++  +qaQ+ ql+ Q+ q q+  ++
  CCE26890.1  34 SATATDRQDEGYESPYIRELQKNIRNLNKKITNASKTdsilsqhA-------GipldelvssriintdqkaqiEKKPALQAQLVQLEEQLVQYQKIHEQ 125
                 445555555556667888888888888888888777743443332.......23333333555566655557888899************999975555 PP

        FlxA  75 kaqekqqseke...ekskskqegvnk 97 
                  ++++ +++ e   + +k+k+++v+k
  CCE26890.1 126 YRSRAVAEKAEwekSLEKDKADAVSK 151
                 55544444433000333444777765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.23
        FlxA  74 ekaqekqqsekeeksks 90 
                 e+a+e++++e+++++++
  CCE26890.1 179 EEASETESEENQSTESQ 195
                 33333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1391  (0.0775838); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3239.56
//
Query:       CCE26891.1  [L=78]
Description: uncharacterized protein CPUR_00360 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-05   25.0   0.1    2.2e-05   24.6   0.1    1.2  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
    0.00023   21.3   0.0    0.00024   21.2   0.0    1.1  1  CENP-W         CENP-W protein


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   2.5e-09   2.2e-05       4      58 ..       9      62 ..       7      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.5e-09
                   XHHHHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-H CS
  CBFD_NFYB_HMF  4 PiarvkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtika 58
                   P a+vkk++k   ++ +++k A ++i    ++f e l +eAa  +k+++ + ++a
     CCE26891.1  9 PRATVKKVIKAH-SNMTMSKNADVTIFLNYVLFMETLVKEAAIFAKQSGERGLTA 62
                   99**********.7777*******************************9998876 PP

>> CENP-W  CENP-W protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.7e-08   0.00024      14      65 ..       5      55 ..       2      78 .] 0.82

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.7e-08
      CENP-W 14 krkaprgflkrvlkrrkphlrleascdllvhlncllfirrlaeesrtnacen 65
                k+  pr+ +k+v+k +   + +++++d+ + ln +lf++ l +e+   a ++
  CCE26891.1  5 KKAYPRATVKKVIKAH-SNMTMSKNADVTIFLNYVLFMETLVKEAAIFAKQS 55
                5667*********976.57999**********************98776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 572.23
//
Query:       CCE26892.1  [L=139]
Description: probable Gim complex component GIM3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-27   93.1  12.8    1.2e-26   92.7  12.8    1.2  1  Prefoldin_2    Prefoldin subunit
  ------ inclusion threshold ------
      0.074   12.1   6.9      0.085   11.9   6.9    1.0  1  THRAP3_BCLAF1  THRAP3/BCLAF1 family
       0.12   10.3   3.8       0.14   10.1   3.8    1.1  1  Prominin       Prominin
       0.21   12.1   9.6       0.51   10.9   2.4    2.1  2  Syntaxin-6_N   Syntaxin 6, N-terminal
       0.33   11.4   0.2       0.33   11.4   0.2    2.5  2  FlaC_arch      Flagella accessory protein C (FlaC)
        1.1    9.7   4.8        9.4    6.8   0.3    2.2  2  NPV_P10        Nucleopolyhedrovirus P10 protein
        1.9    8.7  10.3        3.7    7.8   0.3    2.3  2  Spc24          Spc24 subunit of Ndc80
        3.5    8.1  11.0    8.3e+02    0.3  11.0    2.3  1  DUF3740        Sulfatase protein
        7.3    5.4   9.2         16    4.2   9.2    1.5  1  5_nucleotid    5' nucleotidase family
        9.6    6.9  10.6        1.3    9.7   0.7    2.3  2  YabA           Initiation control protein YabA


Domain annotation for each model (and alignments):
>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7  12.8     7e-30   1.2e-26       1     106 []      29     134 ..      29     134 .. 0.99

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 7e-30
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2   1 qelinkfqqlqqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkee 98 
                  q++inkf++l+q+ +++++q+k++ ++++el++ ++elel+ded+k+++++Gd++++ ++e+++e+Le+   +++ e ++l+++ +++++e+++lk e
   CCE26892.1  29 QDKINKFSRLHQRERAIEEQLKEKSKEKEELDDLSTELELADEDEKIQYKIGDAFFHIPLEQAQEMLETATTRIDDETSALKDKVSTVREEMQQLKIE 126
                  89************************************************************************************************ PP

                  HHCCTS-- CS
  Prefoldin_2  99 lqkklqqq 106
                  l++++++q
   CCE26892.1 127 LYARFGKQ 134
                  *****986 PP

>> THRAP3_BCLAF1  THRAP3/BCLAF1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.9   4.7e-05     0.085     227     346 ..       8     124 ..       2     137 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.7e-05
  THRAP3_BCLAF1 227 RYleeqksrkyghesengkekeqkearlekekskrkskwkeehaldsyqekeeqrskeeqesrsaesespe.....sykyrhkfekklaefeksfs 317
                    R l +++         ++   e + +r++++k+++ s++ +++ + + q ke+ ++kee ++ s+e e ++     +yk+ + f  +  e+ +++ 
     CCE26892.1   8 RMLSKEDE--------KAAGDEVEVRREDQDKINKFSRLHQRERAIEEQLKEKSKEKEELDDLSTELELADedekiQYKIGDAFFHIPLEQAQEML 95 
                    44444444........333344446677777777777777666666666666666666666666665554455567**********9********* PP

  THRAP3_BCLAF1 318 dgskekyeeeekkskskvslgnresqefs 346
                    ++ + + ++e +  k kvs++++e q+++
     CCE26892.1  96 ETATTRIDDETSALKDKVSTVREEMQQLK 124
                    *******************9999888866 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.8   7.6e-05      0.14     629     718 ..      45     137 ..      22     139 .] 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.6e-05
    Prominin 629 laekleelanelsngk...knlkqslkneaqdlraiqqelvlplessvkklkksvkkldeensdlqesikkllaaveraenflkkngseiinn 718
                 ++e+l+e+++e ++     ++l+ + + e+ + +  ++ +++ple++ + l+  ++++d+e+s l+++++ + +++++++ +l+++  + in 
  CCE26892.1  45 IEEQLKEKSKEKEELDdlsTELELADEDEKIQYKIGDAFFHIPLEQAQEMLETATTRIDDETSALKDKVSTVREEMQQLKIELYARFGKQINL 137
                 455555555555444243344455555566666666778999*****************************************9999988875 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.4   0.00029      0.51       5      48 ..      23      68 ..      22      81 .. 0.79
   2 ?    5.6   0.8     0.013        23      39      77 ..      88     126 ..      84     130 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
  Syntaxin-6_N  5 evkeeVqkslnkaeslyrrwerlledtss..stseeldetrteLrk 48
                  ev++e q+++nk   l++r + + e+ ++  +++eeld+++teL+ 
    CCE26892.1 23 EVRREDQDKINKFSRLHQRERAIEEQLKEksKEKEELDDLSTELEL 68
                  799999*************965555444434579********9975 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.013
  Syntaxin-6_N  39 ldetrteLrkalrsiewdledLeetvriveknpskfkid 77 
                   l+++++ L++a   i+ + + L++ v++v+++ ++ ki+
    CCE26892.1  88 LEQAQEMLETATTRIDDETSALKDKVSTVREEMQQLKIE 126
                   567788888899999999999999998888887777765 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   1.8      0.33   5.9e+02       8      35 ..      34      61 ..      29      72 .. 0.71
   2 ?   11.4   0.2   0.00018      0.33       5      52 ..      88     136 ..      87     136 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.33
   FlaC_arch  8 klsklsteletvkkeneelsksveelke 35
                k+s+l  +   ++++++e sk+ eel++
  CCE26892.1 34 KFSRLHQRERAIEEQLKEKSKEKEELDD 61
                5555555666777777777777777765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00018
   FlaC_arch   5 lEnklsklsteletvkkeneelsksveelkenVkdl.lsLYEvVsnqvN 52 
                 lE+  + l+t  + + +e + l+++v ++ e+ ++l ++LY    +q+N
  CCE26892.1  88 LEQAQEMLETATTRIDDETSALKDKVSTVREEMQQLkIELYARFGKQIN 136
                 788889999999999999999********99999998999999999998 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.8     0.017        31      19      56 ..      34      71 ..      23     100 .. 0.74
   2 ?    6.8   0.3    0.0052       9.4      14      38 ..     100     124 ..      93     136 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.017
     NPV_P10 19 kVdalqqqvddvqenlpdvtelnekLdaqsaqLaelet 56
                k + l q+   ++e+l++ ++ +e+Ld++s++L+  ++
  CCE26892.1 34 KFSRLHQRERAIEEQLKEKSKEKEELDDLSTELELADE 71
                55667777778888888888889999999999875544 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0052
     NPV_P10  14 kavddkVdalqqqvddvqenlpdvt 38 
                 + +dd  +al+++v  v+e++++++
  CCE26892.1 100 TRIDDETSALKDKVSTVREEMQQLK 124
                 5567777777777777777776643 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   4.5     0.021        37       8      43 ..      30      65 ..       9      82 .. 0.57
   2 ?    7.8   0.3    0.0021       3.7      12      64 ..      91     132 ..      84     139 .] 0.55

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.021
       Spc24  8 riakelsdleselesleselaelkeeleeleeesee 43
                + +++ s l++   ++e++l+e+ +e eel++ s e
  CCE26892.1 30 DKINKFSRLHQRERAIEEQLKEKSKEKEELDDLSTE 65
                444444455555555555555555555555544444 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0021
       Spc24  12 elsdleselesleselaelkeeleeleeeseekeservedetllklklYrsLG 64 
                 + + le++++++  e + lk+++ ++ ee ++           lk++lY  +G
  CCE26892.1  91 AQEMLETATTRIDDETSALKDKVSTVREEMQQ-----------LKIELYARFG 132
                 33445555555555555555555555555554...........7777777665 PP

>> DUF3740  Sulfatase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3  11.0      0.46   8.3e+02     104     136 ..      92     124 ..       5     127 .. 0.60

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.46
     DUF3740 104 ekaWkdsklqiDkeIelLkdKiknLkevkghlr 136
                 ++   +  + iD e  +LkdK+++ +e  ++l+
  CCE26892.1  92 QEMLETATTRIDDETSALKDKVSTVREEMQQLK 124
                 444455667788888888888888888877777 PP

>> 5_nucleotid  5' nucleotidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   9.2    0.0091        16     335     402 ..      20     131 ..      17     137 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0091
                  HHHHHHHHTHHH.HHHHHHHHHHHHHHHHHHHHHHH...........................................T.T.THHHHHHHHHHHHHH CS
  5_nucleotid 335 eElevleekkek.eeleelekleelledelkklkss...........................................eee.skekleeleedleel 387
                  +E+ev +e+++k +++++l+++e+++e++lk+ + +                                           + +  ++++++l+++++++
   CCE26892.1  20 DEVEVRREDQDKiNKFSRLHQRERAIEEQLKEKSKEkeelddlsteleladedekiqykigdaffhipleqaqemletaT-TrIDDETSALKDKVSTV 116
                  68999999999999999999999999999988888788999999999999999999999999999999987665554321.13555556666666666 PP

                  HHHHHHHHHHHHCCS CS
  5_nucleotid 388 kkeirelreelkelf 402
                  ++e+++l+ el + f
   CCE26892.1 117 REEMQQLKIELYARF 131
                  666666666666555 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   2.9      0.23   4.2e+02       7      37 ..      35      65 ..      27      82 .. 0.45
   2 ?    9.7   0.7    0.0007       1.3      11      44 ..      93     126 ..      85     137 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.23
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  7 fdkleeleeqleelleeleelkeelaellee 37
                f++l++ e+ +ee l+e ++ keel +l  e
  CCE26892.1 35 FSRLHQRERAIEEQLKEKSKEKEELDDLSTE 65
                3344444444444444444444444333332 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0007
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  11 eeleeqleelleeleelkeelaelleenaeLele 44 
                 e le+ ++++ +e ++lk++++++ ee ++L++e
  CCE26892.1  93 EMLETATTRIDDETSALKDKVSTVREEMQQLKIE 126
                 568889999999********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2242  (0.125049); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 974.85
//
Query:       CCE26893.1  [L=403]
Description: uncharacterized protein CPUR_00362 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3099.45
//
Query:       CCE26894.1  [L=766]
Description: probable methionine synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     1e-151  504.8   0.0     5e-147  489.4   0.0    2.4  2  Meth_synt_2     Cobalamin-independent synthase, Catalytic dom
   9.6e-120  399.8   0.5   2.5e-111  372.2   0.0    3.4  4  Meth_synt_1     Cobalamin-independent synthase, N-terminal do
    7.1e-05   22.1   0.0     0.0025   17.0   0.0    2.5  3  URO-D           Uroporphyrinogen decarboxylase (URO-D)
  ------ inclusion threshold ------
      0.061   13.5   3.9       0.18   11.9   3.9    1.8  1  Bac_small_YrzI  Probable sporulation protein (Bac_small_yrzI)


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   9.8e-06     0.044     126     188 ..     159     223 ..     134     317 .. 0.78
   2 !  489.4   0.0  1.1e-150    5e-147       1     323 [.     435     758 ..     435     759 .. 1.00

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.8e-06
                  EEE-HHHHHHTSEE-..TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-TTSSTT--SSGGG CS
  Meth_synt_2 126 lltGpvtilnwsfvr..ddvdraeaaaqialalrdevkdLeaaGikviQiDepalreGlplkkad 188
                  +l Gpv+ l+ +     + vd  + + ++  +  + + +L++aG++ +QiDep l   lp k++ 
   CCE26894.1 159 VLVGPVSFLHLGKADrgQSVDPIDLLDKLLPVYEQLLVKLKEAGAETVQIDEPTLVFDLPAKTKA 223
                  56777777777776645455555666777778888889*****************9999998832 PP

  == domain 2  score: 489.4 bits;  conditional E-value: 1.1e-150
                  S-BB--SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTEE--SS--EEEETTEEE---EE- CS
  Meth_synt_2   1 lpTttiGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgfaftkngwvqsygsrcvrppiiv 98 
                  +pTttiGSfPqt+e+r  r+++ kge++ee+y k+i+eei++ v+ qeelg+Dv vhgepeR+dmv+yfge+l+g+ ft+++wvqsygsrcvrppiiv
   CCE26894.1 435 FPTTTIGSFPQTSEIRVQRNKFTKGEITEEQYDKFIEEEIKQNVKIQEELGLDVFVHGEPERNDMVQYFGERLKGYTFTTHAWVQSYGSRCVRPPIIV 532
                  8************************************************************************************************* PP

                  SS---SS-SSTHHHHHHTTS-SS-BEEEEE-HHHHHHTSEE-TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-TTSSTT--SSG.GGHHHHHHH CS
  Meth_synt_2  99 gdvsrpaamtvkesalaqsltdkpvkglltGpvtilnwsfvrddvdraeaaaqialalrdevkdLeaaGikviQiDepalreGlplkk.adwaayldw 195
                  gd+srpa+mtvkes++a s+ +kp+kg+ltGpvt+l+wsf+rddv+++ +a+q+alalrdev dLe+aG+ viQ+DepalreGlpl+  ++++ayl+w
   CCE26894.1 533 GDISRPAPMTVKESKYAVSVSSKPMKGMLTGPVTCLRWSFPRDDVHQSVQAQQLALALRDEVVDLEKAGVDVIQVDEPALREGLPLRSgKERDAYLQW 630
                  ****************************************************************************************9********* PP

                  HHHHHHHHHTTS-TTSEEEEEES-S--CCCHHHHHTT--SEEEESBSSS-SSGGGGTTTT---SEEEEBSS-TTSSS--THHHHHHHHHCHHCTS-ST CS
  Meth_synt_2 196 aveafrldtiaaaddtqvhtHlCyselndilsaiaaldvDvitieasrsdeellealeevkygrgvglGvydihsprvpsmeeiaalikkaldvapke 293
                  av+af+l+t++++d tq+h+H+Cyse++d  +aiaald+Dv++ie+s+sd +ll ++++  y+r++g+Gvydihsprvps +ei+++i+++l+ ++ e
   CCE26894.1 631 AVNAFKLSTAGVEDATQIHSHFCYSEFQDFFHAIAALDADVLSIENSKSDAKLLRVFVDSAYPRHIGPGVYDIHSPRVPSEQEIRDRIEEMLQFLKPE 728
                  ************************************************************************************************** PP

                  SB-BB-SS-STTS-HHHHHHHHHHHHHHHH CS
  Meth_synt_2 294 rlwvnPdCGLktrkreearaalknmvdaAk 323
                  +lw++PdCGLktr+++e+++al nmv+aAk
   CCE26894.1 729 QLWIDPDCGLKTRQWKETKEALVNMVNAAK 758
                  *****************************8 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.2   0.0  5.6e-115  2.5e-111       2     310 ..       4     316 ..       3     319 .. 0.96
   2 !    3.9   0.0    0.0071        32      14      59 ..     447     492 ..     437     501 .. 0.86
   3 !   20.0   0.0   9.1e-08   0.00041     146     262 ..     553     676 ..     535     695 .. 0.66
   4 ?   -2.9   0.0      0.82   3.7e+03       8      61 ..     706     759 ..     703     760 .. 0.74

  Alignments for each domain:
  == domain 1  score: 372.2 bits;  conditional E-value: 5.6e-115
                  EB-S---SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES---SS-HHHHHHHHTT---GGGTT.SSSSSHHHHHHHHHS CS
  Meth_synt_1   2 ssilGfPriGekRelkkalesywkgkiseeeLektakeLrakhwkkqkeagidlipvndfslYDhvLdtavllgaiPerfkleekkeeldtyFalaRG 99 
                  s +lGfPr+G  R+lkka+e+yw gkis+++L+++ak+Lr++hwk+qk+ag+d+ip+ndf+lYDhvL     +ga+Per+++ ++ +++d+yFa++RG
   CCE26894.1   4 SAVLGFPRMGVLRDLKKATEAYWGGKISQADLLTEAKRLRLAHWKIQKDAGVDIIPSNDFALYDHVLHQIQDFGAVPERYTK-DGLDTVDQYFAMGRG 100
                  679*****************************************************************************87.999************ PP

                  C....TTCT--EEEESTTSS-EEEE-BE-SS.----S.-THHHHHHHHHHHTTGGEEEEEE-HHHHHHT-EETTCC..-HCHHHHHHHHHHHHHHHHH CS
  Meth_synt_1 100 k....kdvaalemtkwFntnYHYlvPelekdtefkla.seklleevkeakalgieakpvllGpltflkLskakeek.veklellekLlpvYkelleeL 191
                  +     dv++lem+kwF++nYHY++P+l+++++fkl  s k+++e+keak++gi ++pvl+Gp++fl+L+ka++++ v++++ll+kLlpvY++ll +L
   CCE26894.1 101 HqkggVDVPSLEMVKWFDSNYHYVKPTLQDNQTFKLVdSPKAVAEFKEAKEAGIATRPVLVGPVSFLHLGKADRGQsVDPIDLLDKLLPVYEQLLVKL 198
                  *988889****************************87488********************************99888********************* PP

                  HHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHTC.CTTTSEEEEE--SS-.CCHHHHHTTSSTSEEEEETSSHCHHHHHHHHCTT.TTSEEEEEEE CS
  Meth_synt_1 192 keagvewvqidEPalvldlekeelealkeaYeelak.ekkelklllatyFdsvaealellaelpveglglDlvraeenlealkkaglpedkvLsaGvi 288
                  keag+e+vqidEP+lv+dl++++++a+k aYe++a+  +k +kl+++tyF+++ ++l+ll   ++ ++++Dlvr++e+le+++  ++ +++vLs+Gv+
   CCE26894.1 199 KEAGAETVQIDEPTLVFDLPAKTKAAFKPAYEKFASlGDKIPKLVFTTYFGDIVHNLDLL-PKDIYAVHIDLVRNPEQLETVAG-AIGSKTVLSVGVV 294
                  **********************************862567789***************99.789*******************9.99*********** PP

                  -SSS-B---HHHHHHHHHHHHH CS
  Meth_synt_1 289 dGrniWradlekalelleelae 310
                  dGrniW+++l++a+e++++  +
   CCE26894.1 295 DGRNIWKTNLKRAIETVQTAVH 316
                  *****************98765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0071
                  THHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES CS
  Meth_synt_1  14 RelkkalesywkgkiseeeLektakeLrakhwkkqkeagidlipvn 59 
                   e++   +++ kg+i+ee+  k  +e  ++++k+q+e g+d+   +
   CCE26894.1 447 SEIRVQRNKFTKGEITEEQYDKFIEEEIKQNVKIQEELGLDVFVHG 492
                  58888999*********************************97665 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 9.1e-08
                  TTGGEEEEEE-HHHHHHT-EETTCC.-HCHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSG.......CHHHHHHHHHHHHHHT.CCTTTSEEE CS
  Meth_synt_1 146 lgieakpvllGpltflkLskakeekveklellekLlpvYkelleeLkeagvewvqidEPalvldl.......ekeelealkeaYeela.kekkelkll 235
                      +k +l Gp+t l  s  +++  ++    ++L  + ++ + +L++agv+++q+dEPal   l       +++ l+ + +a++  +   ++ +++ 
   CCE26894.1 553 SSKPMKGMLTGPVTCLRWSFPRDDV-HQSVQAQQLALALRDEVVDLEKAGVDVIQVDEPALREGLplrsgkeRDAYLQWAVNAFKLSTaGVEDATQIH 649
                  44557889***********999988.7777889999999998999****************8777444221122222333333333321223334444 PP

                  EE--SS-.CCHHHHHTTSSTSEEEEET CS
  Meth_synt_1 236 latyFdsvaealellaelpveglglDl 262
                   +  + ++++ ++++a+l+ + l+++ 
   CCE26894.1 650 SHFCYSEFQDFFHAIAALDADVLSIEN 676
                  444556666666777666666666665 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 0.82
                  -SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES-- CS
  Meth_synt_1   8 PriGekRelkkalesywkgkiseeeLektakeLrakhwkkqkeagidlipvndf 61 
                  Pr+ ++ e+++ +e+  +    e+   +    L++++wk+ kea ++++ ++ f
   CCE26894.1 706 PRVPSEQEIRDRIEEMLQFLKPEQLWIDPDCGLKTRQWKETKEALVNMVNAAKF 759
                  777777777777777776666666666677789999999999999999887665 PP

>> URO-D  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.018        81     178     206 ..     183     211 ..     180     327 .. 0.78
   2 ?   -3.5   0.0      0.97   4.4e+03     208     234 ..     458     484 ..     455     502 .. 0.75
   3 !   17.0   0.0   5.5e-07    0.0025     193     344 ..     597     755 ..     562     757 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHTT-SEEEEEET CS
       URO-D 178 lldkltdvvieylkaqieagAdaiqifDs 206
                 lldkl  v  + l ++ eagA+ +qi + 
  CCE26894.1 183 LLDKLLPVYEQLLVKLKEAGAETVQIDEP 211
                 89************************983 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.97
                 GGGS-HHHHHHHTHHHHHHHHHHHHH. CS
       URO-D 208 agllspedfeefvlpylkrivdevkae 234
                  g +++e++++f+ + +k+ v+  ++ 
  CCE26894.1 458 KGEITEEQYDKFIEEEIKQNVKIQEEL 484
                 688999999999999999888765555 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 5.5e-07
                 HHHTT-SEEEEEE.TTGGGS-HHH......HHHHTHHHHHHHHHHHHH.H--S-EEEEESSHH.HHHHHHTTS--SEEE--TTS-HHHHHH....SS.. CS
       URO-D 193 qieagAdaiqifD.swagllsped......feefvlpylkrivdevkaegpkvpvilfikgagaeiledlaelgadvlsldwtvdlkeaar....evgd 280
                 + +ag+d+iq+ + +  + l+ +       + ++++++ k   ++v++ ++     +f+  + + +++++a l+advls++++ + ++  r    + + 
  CCE26894.1 597 LEKAGVDVIQVDEpALREGLPLRSgkerdaYLQWAVNAFKLSTAGVEDATQ--IHSHFCYSEFQDFFHAIAALDADVLSIENSKSDAKLLRvfvdSAYP 693
                 5589********998888887554444555******************876..666666667778*******************998888899986667 PP

                 ..EEE--B-G.GGGG.S-HHHHHHHHHHHHT.T---SSSEEB-BSS---TTS-HHHHHHHHHHHH CS
       URO-D 281 kvalqGnldPialLl.gspeeiekevkeilekgaggkkgyilnlGhgippetppenvkalveavk 344
                 + +  G  d +      s++ei+++++e+l+    ++++ ++ + +g+      e+ +alv+ v+
  CCE26894.1 694 RHIGPGVYDIH-SPRvPSEQEIRDRIEEMLQF--LKPEQLWIDPDCGLKTRQWKETKEALVNMVN 755
                 78888999995.6666***************5..55999*********************99997 PP

>> Bac_small_YrzI  Probable sporulation protein (Bac_small_yrzI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.9   4.1e-05      0.18      12      37 ..     451     476 ..     449     479 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.1e-05
  Bac_small_YrzI  12 IqKRkyseeEiereqqiekieeemkd 37 
                     +q++k+++ Ei  eq+++ ieee+k+
      CCE26894.1 451 VQRNKFTKGEITEEQYDKFIEEEIKQ 476
                     8************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1186  (0.0661498); expected 358.6 (0.02)
Passed bias filter:                      671  (0.0374254); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.24s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 5242.83
//
Query:       CCE26895.1  [L=485]
Description: uncharacterized protein CPUR_00364 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.3  12.3       0.64   10.1   5.7    2.9  2  AT_hook   AT hook motif


Domain annotation for each model (and alignments):
>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.5    0.0012        21       2      11 ..     332     341 ..     331     343 .. 0.83
   2 ?   10.1   5.7   3.5e-05      0.64       1      11 [.     357     367 ..     357     368 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0012
     AT_hook   2 RkRGRPrKaa 11 
                 R RGRP Ka 
  CCE26895.1 332 RTRGRPEKAV 341
                 89****9886 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 3.5e-05
     AT_hook   1 kRkRGRPrKaa 11 
                 k+kRGRP+K++
  CCE26895.1 357 KKKRGRPKKTE 367
                 8********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3614.33
//
Query:       CCE26896.1  [L=537]
Description: probable threonine synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-27   95.7   0.0    3.1e-27   94.6   0.0    1.6  1  Thr_synth_N  Threonine synthase N terminus
    6.5e-19   68.4   0.0    3.4e-18   66.1   0.0    1.9  1  PALP         Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> Thr_synth_N  Threonine synthase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   3.5e-31   3.1e-27       1      79 []      19      96 ..      19      96 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 3.5e-31
  Thr_synth_N  1 kYiSTRgeaeklsfeeallkGlAeDgGLyvPeeiPklsaeeleelrklsYaelafevlklfi.edeipeedLkeliekaY 79
                 +Y+STRge++ +sfee++l+GlA+DgGLy+Pe+iP+ ++  +e++++l++++la+e+l+l+i  +eip++dL+++i+++Y
   CCE26896.1 19 RYLSTRGEDSDCSFEEVVLRGLATDGGLYIPEQIPHAES--WESWQDLTFSQLAYEILSLYIsPSEIPADDLRDIIDRSY 96
                 7**********************************9865..7*************************************9 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   3.8e-22   3.4e-18       8     278 ..     105     456 ..     100     468 .. 0.84

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 3.8e-22
                 --EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHH...HHHHH....HHTT.....TTTSEEEEEBSSHHHHHHHHHHHHH.T-EEEEEEETTS-H.. CS
        PALP   8 TPlvrlprlskelgvplflKlEslnptgSfKdRgae...yllar....lkeg.....tgaktvveassGNhgralAaaaall.Glkvtivvpadasp.. 91 
                 TPlv+l++         +l   ++ pt +fKd +++   +l+++      eg     +   tvv a+sG++g a+++  +    + v i +p++  +  
  CCE26896.1 105 TPLVHLEGKH-------YLLELFHGPTFAFKDVALQfvgNLFEYfltrKNEGktgrdRHHLTVVGATSGDTGSAAIYGLRGKkDVSVFIMFPKGRVSpi 196
                 8888888854.......77667777***********7773333363324444999999999*******************7768**********99445 PP

                 HHHHHHHHTT-EEEEE..CCHHHHHHHHHHHHHHH..STTCEE--TTT.SHHHHHH.HHTHHHHHH...HHTTTTEEE.......EEEE-SSSHHHHHH CS
        PALP  92 ekvallrllGaevvev..ggdydeavaaaaelaae..gegaylvsqfd.nptvieg.ygtiglEil...eqlggkpda.......vvvpvGgGgliaGi 174
                 + ++++  l  +v+    +g +d+++++ + l+++   ++++ v     n+ +++   ++i + ++   + ++++pd        +vvp+G+ g i + 
  CCE26896.1 197 QELQMTTVLDKNVHNLsiEGYFDDCQDILKSLLSDpeANKPITVG--AvNSINWARiLAQITYYFHsyfSLVKKSPDFklgdkvrFVVPTGNFGDILAG 293
                 9***************99*****************5445555555..55888888889999999975563333555544455555************** PP

                 HHHHHHHSTT-EEEEEEECTTCGGTTCCS..S.SS..B............................................................. CS
        PALP 175 aaglkerrpdvrvigvepegsdalarslragrrvtvpvs............................................................ 213
                 +++++ + p  +++++ ++++d l r+++ g++++ p++                                                            
  CCE26896.1 294 YFAMRMGLPVDKLVIA-TNENDILDRFWKSGKYEKKPEPeegqeapavegvretlspamdilvssnferllwflayefatsagmddlwnkkqagqevak 391
                 *********7666666.666**************************************************************************99955 PP

                 ..SSS.CCSTCS....CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHH CS
        PALP 214 ..dtiadglavg....spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklre 278
                   + + +          +  ++++ ++r  d    v+d++++e++ + +r+ g++++p++a++  a  +r+
  CCE26896.1 392 wlKELKT----TgsfgPVYQDVLSSAKRDFD-SERVDDAQTVETILTTYRKLGYILDPHTAVGATAS-ARS 456
                 5444444....44455899999999999999.*****************************998887.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      680  (0.0379274); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.32s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3674.10
//
Query:       CCE26897.1  [L=360]
Description: related to carnitine/acylcarnitine translocase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-37  126.3  11.3      4e-14   52.3   1.1    4.0  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.3   6.5e-18   1.2e-13      10      91 ..      44     118 ..      38     122 .. 0.93
   2 !   52.3   1.1   2.2e-18     4e-14      10      94 ..     153     250 ..     146     253 .. 0.86
   3 !   26.7   0.2   2.2e-10     4e-06       7      95 ..     263     346 ..     258     348 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 6.5e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  10 laGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91 
                 +a++ + +++tl ++Pld vKtr+qt + ++       ++d+++++y++e l+g++rG+++ +  ++  + + f++y+  k 
  CCE26897.1  44 IAASSSSVFSTLTAFPLDSVKTRMQTYQYNG-------FVDCVRQTYRSEHLAGFFRGVMAPMASITLVRTISFSIYQRAKY 118
                 789999*******************988774.......9**************************************99885 PP

  == domain 2  score: 52.3 bits;  conditional E-value: 2.2e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHH.............CCCSSTTTSCSS..HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  10 laGglagavatlvttPldvvKtrlqt.............qkksskksksaa..ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +aG++ag++ t++++P+++ K   q+             ++  +++ +  +  +l+++ +i+k+ G++gly G+   llr +  ++++f++ye+ k+++
  CCE26897.1 153 AAGATAGSIITFIACPFELTKLSAQVsvllaeragtcqkSRAVAASYQ--NkgTLKTMMNIVKHRGVLGLYTGFRLHLLRDTLGTGIYFMVYESGKQVV 249
                 69****************************999777744333333333..255*****************************************99987 PP

                 C CS
   Mito_carr  94 l 94 
                 +
  CCE26897.1 250 T 250
                 6 PP

  == domain 3  score: 26.7 bits;  conditional E-value: 2.2e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHH.HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGl.rglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 + ++aGg++g+v++ +++P+d +K   q ++  ++  +   +++   ki     + r +yrGl++++ r+ + +a+ f+++e +k+ +++
  CCE26897.1 263 AVVAAGGMCGLVSWAMIYPIDSAKSIYQRNSLLHSRGE---TVEPAPKITF---FkRQMYRGLGVSMGRSCVVNAIFFSSFELIKKRIKT 346
                 5689*************************999988755...6666666653...22789**************************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2590.14
//
Query:       CCE26898.1  [L=365]
Description: uncharacterized protein CPUR_00367 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-26   92.3   7.5      2e-26   92.3   7.5    3.6  3  DFRP_C     DRG Family Regulatory Proteins, Tma46
    3.6e-06   26.7   1.0    3.6e-06   26.7   1.0    2.4  3  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    2.5e-05   24.9   2.9    2.5e-05   24.9   2.9    3.5  3  Torus      Torus domain
    8.5e-05   22.2   7.2     0.0026   17.5   1.8    3.2  3  zf-CCCH_4  CCCH-type zinc finger
    0.00045   20.2   5.7    0.00045   20.2   5.7    3.1  3  zf_CCCH_4  Zinc finger domain
  ------ inclusion threshold ------
      0.012   16.0  12.5      0.072   13.6   3.4    2.9  2  zf-CCCH_2  RNA-binding, Nab2-type zinc finger
        0.4   10.9   6.4        1.4    9.2   1.6    3.0  3  zf-CCCH_3  Zinc-finger containing family


Domain annotation for each model (and alignments):
>> DFRP_C  DRG Family Regulatory Proteins, Tma46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   7.9         7   1.8e+04      38      50 ..      58      70 ..      48      82 .. 0.46
   2 ?    1.2   0.3      0.21   5.4e+02      70      88 ..     142     160 ..     113     171 .. 0.74
   3 !   92.3   7.5   7.7e-30     2e-26       1      89 []     235     317 ..     235     317 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 7
      DFRP_C 38 keaeeekeekkkk 50
                k+ae++++ek+kk
  CCE26898.1 58 KQAEKAQREKEKK 70
                1122111112221 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.21
      DFRP_C  70 ddeeeeeeeeeawdleefr 88 
                 ++ee+++e++++wd e++r
  CCE26898.1 142 EEEEKKKETSADWDEEKLR 160
                 3344444445688888876 PP

  == domain 3  score: 92.3 bits;  conditional E-value: 7.7e-30
      DFRP_C   1 kitLEefiEteRakLdkklTpvtletFakWKkkrlekkeaeeekeekkkkkeglsGrelfefnpelaedddeeeeeeeeeawdleefre 89 
                 ++tLE+f+E+eR+kL+++lTpvt+e+FakWKk+rl+kk+aee+  +k+k++   +Gr+lfe ++++++++d+++e++ ++aw+le++r+
  CCE26898.1 235 TLTLEDFLESERHKLSGTLTPVTPESFAKWKKDRLDKKAAEEQL-RKAKEN---TGRALFE-SGKWRDEEDSDDEDD-DDAWNLEKLRQ 317
                 69**************************************9999.999999...*******.999**9999998876.899****9885 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   1.0   1.4e-09   3.6e-06       1      26 [.      98     122 ..      98     123 .. 0.95
   2 ?   -3.0   0.2       2.9   7.5e+03       5       9 ..     177     181 ..     176     181 .. 0.67
   3 ?   -0.5   0.2      0.51   1.3e+03      18      25 ..     200     207 ..     195     208 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.4e-09
                 -HCHCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   1 yktelCrffmrtGyCkyGdrCkFaHg 26 
                 +kt+lC f+++ G C  G +CkF+H+
  CCE26898.1  98 PKTVLCIFYKK-GDCEKGKKCKFSHD 122
                 69*****9999.*************6 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.9
                 CBCHH CS
     zf-CCCH   5 lCrff 9  
                  C+ff
  CCE26898.1 177 VCKFF 181
                 57776 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.51
                 GGG-SSBS CS
     zf-CCCH  18 GdrCkFaH 25 
                 Gd+C + H
  CCE26898.1 200 GDKCMYKH 207
                 78898888 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   2.9   9.7e-09   2.5e-05      47     102 ..      75     132 ..      23     140 .. 0.69
   2 !    7.1   0.9    0.0035       8.9      52      95 ..     160     211 ..     133     226 .. 0.55
   3 ?   -2.0   0.2       2.3     6e+03      24      24 ..     286     286 ..     260     333 .. 0.55

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 9.7e-09
                 ---S----HHHH----HHH..HSTT--B-HHHHHT--SSGGG-SSB-S---SS----T CS
       Torus  47 ekaktrcnikkdsGytkad..kekesyfClfFarGlCakGkkCeylHrlPteedlkek 102
                 +k +  + +++ + + k       ++++C+f+ +G C kGkkC++ H+l  e++++++
  CCE26898.1  75 AKREAALLLNRPAQIQKVPfgVDPKTVLCIFYKKGDCEKGKKCKFSHDLTIERKVEKR 132
                 333333444444444444433566789**********************998886555 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0035
                 ---HHHH----HHHHSTT--B-HHHHH....T......--SS.GGG-SSB-S--- CS
       Torus  52 rcnikkdsGytkadkekesyfClfFar....G......lCak.GkkCeylHrlPt 95 
                 r  +  ++G  k +   +  +C fF      G      +C++ G kC y H lP 
  CCE26898.1 160 RKVVLSKKGNQKTS---TDKVCKFFISaiedGkygwfwICPNgGDKCMYKHALPP 211
                 44444444444443...33555555431112233344468873589********5 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.3
                 - CS
       Torus  24 g 24 
                 g
  CCE26898.1 286 G 286
                 1 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.8     1e-06    0.0026       2      22 .]     102     122 ..     101     122 .. 0.95
   2 ?    1.1   0.0      0.15   3.7e+02       1       7 [.     176     182 ..     176     188 .. 0.86
   3 !    4.9   0.2    0.0093        24      14      21 ..     200     207 ..     192     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1e-06
   zf-CCCH_4   2 lCpyfakGsCrfGdnCrFsHd 22 
                 lC ++ kG C  G +C+FsHd
  CCE26898.1 102 LCIFYKKGDCEKGKKCKFSHD 122
                 899*****************9 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.15
   zf-CCCH_4   1 rlCpyfa 7  
                 ++C++f+
  CCE26898.1 176 KVCKFFI 182
                 69***96 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0093
   zf-CCCH_4  14 GdnCrFsH 21 
                 Gd+C ++H
  CCE26898.1 200 GDKCMYKH 207
                 78****** PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   5.7   1.8e-07   0.00045       1      19 []     103     121 ..     103     121 .. 0.99
   2 ?   -0.7   0.2      0.64   1.6e+03       1       5 [.     178     182 ..     178     183 .. 0.85
   3 ?    3.2   0.2     0.039     1e+02      12      19 .]     200     207 ..     200     207 .. 0.96

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.8e-07
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 C f+++G C kG kC+F+H
  CCE26898.1 103 CIFYKKGDCEKGKKCKFSH 121
                 9****************** PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.64
   zf_CCCH_4   1 Ckffl 5  
                 Ckff+
  CCE26898.1 178 CKFFI 182
                 99996 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.039
   zf_CCCH_4  12 GdkCrFaH 19 
                 GdkC + H
  CCE26898.1 200 GDKCMYKH 207
                 9*****99 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   3.4   2.8e-05     0.072       2      17 ..     103     121 ..     102     121 .. 0.96
   2 ?    6.4   1.7    0.0051        13      10      17 ..     200     207 ..     178     208 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.8e-05
   zf-CCCH_2   2 Crffpn..C.tnpkCpFaH 17 
                 C f+ +  C +++kC+F+H
  CCE26898.1 103 CIFYKKgdCeKGKKCKFSH 121
                 99***************** PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0051
   zf-CCCH_2  10 npkCpFaH 17 
                 ++kC+++H
  CCE26898.1 200 GDKCMYKH 207
                 57****** PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.7   4.4e+03      66      90 ..      65      89 ..      28      95 .. 0.63
   2 ?    9.2   1.6   0.00055       1.4       8      27 ..     103     122 ..      96     159 .. 0.85
   3 ?    2.8   0.0     0.051   1.3e+02       8      27 ..     189     208 ..     182     211 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.7
   zf-CCCH_3 66 cywenqpaGcqklhcaflhekprav 90
                   e+++a + k ++a+l ++p ++
  CCE26898.1 65 REKEKKAAEDAKREAALLLNRPAQI 89
                3334555556666666666666655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00055
   zf-CCCH_3   8 cyffyystctkGdscpfrhe 27 
                 c f+    c+kG +c f h 
  CCE26898.1 103 CIFYKKGDCEKGKKCKFSHD 122
                 88999999999999999985 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.051
   zf-CCCH_3   8 cyffyystctkGdscpfrhe 27 
                  y +++   + Gd+c ++h+
  CCE26898.1 189 KYGWFWICPNGGDKCMYKHA 208
                 577777777899*******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2122  (0.118356); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 2645.61
//
Query:       CCE26899.1  [L=259]
Description: related to RNA annealing protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-17   62.9   0.0    2.9e-17   62.3   0.0    1.3  1  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 
    3.7e-05   24.2   4.4    3.7e-05   24.2   4.4    2.7  2  FoP_duplication  C-terminal duplication domain of Friend of P
     0.0027   17.5   0.0     0.0059   16.4   0.0    1.6  1  RRM_occluded     Occluded RNA-recognition motif
  ------ inclusion threshold ------
      0.013   14.4   3.8      0.022   13.6   3.8    1.3  1  Peptidase_M35    Deuterolysin metalloprotease (M35) family
      0.068   13.2   0.0       0.13   12.3   0.0    1.4  1  RRM_3            RNA binding motif
        4.2    7.6   7.6         16    5.8   1.9    2.4  2  FXR_C1           Fragile X-related 1 protein C-terminal regio


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   9.5e-21   2.9e-17       1      70 []      69     139 ..      69     139 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 9.5e-21
                 EEEESETTTSSHHHHHHHHHT.TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk.fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 ++V+nLp+dv+e+++ke+F + +Gpik+++lv+  +  s+g+a V F++++ A kA ++lng  +++r++k
  CCE26899.1  69 VIVSNLPKDVSEQQIKEYFVQvVGPIKRVDLVYGPNSMSRGIANVSFHKSDGASKAYQKLNGLLVDNRPIK 139
                 68******************************************************************996 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   4.2         1   3.1e+03       7      40 ..      21      43 ..      13      63 .. 0.41
   2 !   24.2   4.4   1.2e-08   3.7e-05       7      62 ..     173     230 ..     165     251 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1
  FoP_duplication  7 arrggggrggrrgrgrggrggrggrgrgrggrgg 40
                     ++r++ +r    +r+ +  gg            +
       CCE26899.1 21 RNRRSTQRRSTDTRPSAPAGG-----------IQ 43
                     333333333333333333333...........11 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.2e-08
  FoP_duplication   7 arrggggrggrrgrgrggrggrggrgrgrggrggrkkkkpltkeeLDaeLDaYmg....k 62 
                      +r + + +g+++g  ++g+g +g ++++r+gr    ++ ++t++eLD e+ +Y +     
       CCE26899.1 173 PRSAASTKGANNGAAKSGNGANGAANKKRRGRNA--RPVKKTADELDTEMANYFSgaadG 230
                      3444455555555555655556666666666655..999**************9855540 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     2e-06    0.0059       6      70 ..      71     140 ..      66     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2e-06
  RRM_occluded   6 llplsDtvnkariralveekegeikkivLv....p.dheGAivefkdekiagkasLaLdgsefegkklrc 70 
                   + +l+  v++++i++ + +  g+ik++ Lv    + + + A v f+++  a ka  +L+g   +++ +++
    CCE26899.1  71 VSNLPKDVSEQQIKEYFVQVVGPIKRVDLVygpnSmSRGIANVSFHKSDGASKAYQKLNGLLVDNRPIKI 140
                   779*************99999******9984433213344**************************9986 PP

>> Peptidase_M35  Deuterolysin metalloprotease (M35) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   3.8   7.5e-06     0.022     152     249 ..     139     239 ..     123     247 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.5e-06
                    XXXXXXXXXXXXXXXXXXXXXXXX-EEE.S--THHHHHHHH..HHHHHHHHHHHHHHHHHHS-HHHHHHHHS---HHHHHHHHHHHHHHHHHHT-S CS
  Peptidase_M35 152 eleievdaakaaavtkalklldrrtkva.scsgsresalst..alknavklanaaasaaesGssskfeeyfkttssstrtsvaarlravakeasst 244
                    ++ei v aa+  +v  a+k l  rt    + +++ +sa st  a + a+k  n a  aa+     +     k t  +  t +a+ +   a  a+ +
     CCE26899.1 139 KIEIVVGAAHVDKVLPAVKSLAERTAQPkQPKAQPRSAASTkgANNGAAKSGNGANGAANKKRRGRNARPVKKTADELDTEMANYFSGAADGANNA 234
                    57888999****************9775156777777766622455578999****************************************9999 PP

                    B-SS- CS
  Peptidase_M35 245 ssGst 249
                    ++G +
     CCE26899.1 235 AAGGA 239
                    88865 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.3e-05      0.13       6      77 ..      71     146 ..      68     170 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.3e-05
                 EEE-SSS--HHHHHHHCHC.CS-ECEEEE-TTSSE.....EEEEESSHHHHHHHHHHHHHC-B-CCTSSEEEEE--HH CS
       RRM_3   6 lsGlnkelsredikellsk.lgevayvdyekgdke.....gevrFkedeeakkalekateaklkikdaevtlelLeGe 77 
                 +s l k++s ++ike + + +g+++ vd+  g ++     ++v F++++ a ka +k+      +++  +++e++ G 
  CCE26899.1  71 VSNLPKDVSEQQIKEYFVQvVGPIKRVDLVYGPNSmsrgiANVSFHKSDGASKAYQKLNGL--LVDNRPIKIEIVVGA 146
                 5567899********9987358*******9998764555578**************99876..788888888888775 PP

>> FXR_C1  Fragile X-related 1 protein C-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   1.9    0.0055        16      27      56 ..       6      35 ..       2      47 .. 0.70
   2 ?    4.8   0.4     0.011        32      11      51 ..     167     207 ..     159     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0055
      FXR_C1 27 dqtaDtdasesqlsanRRRRsRRRRtDeda 56
                d++ D   s  +lsa  RR   RR tD   
  CCE26899.1  6 DKPLDDIVSAKRLSARNRRSTQRRSTDTRP 35
                666666667777777777777888899765 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.011
      FXR_C1  11 kdpdsnpyslldtnetdqtaDtdasesqlsanRRRRsRRRR 51 
                 k+p ++p s++ t+ +++ a   +  ++ +an++RR R  R
  CCE26899.1 167 KQPKAQPRSAASTKGANNGAAKSGNGANGAANKKRRGRNAR 207
                 78889999999999999999999999999*******99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1872.79
//
Query:       CCE26900.1  [L=84]
Description: uncharacterized protein CPUR_00369 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      153  (0.00853366); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 614.44
//
Query:       CCE26901.1  [L=169]
Description: uncharacterized protein CPUR_00370 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1235.58
//
Query:       CCE26902.1  [L=224]
Description: related to Hsp90 associated co-chaperone [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-07   31.1   0.0    5.8e-07   30.4   0.0    1.3  1  CS        CS domain


Domain annotation for each model (and alignments):
>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   3.2e-11   5.8e-07      10      76 .]      23      91 ..       9      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 3.2e-11
                TEEEEEEE-TTCTTTTTCEEEEEETTEEEEEE....TS.CEEEEECEBSS-BETTTEEEEEETTEEEEEEEB CS
          CS 10 deVvvtiyvkkvnikkkdvkvefkerslkvki....gk.eklliegeLfgpIdpeesswtieskkveitLkK 76
                + +++ti+v++v  +k+ +++++k++ l++       k ++ + e ++f++Idp+es+++ ++k++ei+++K
  CCE26902.1 23 NFIYLTINVPDV--PKEGLQLDLKPTGLTFTGtsgtLKrKYHV-ELDFFAEIDPKESKISHTAKNIEIKIQK 91
                6799*******9..*************9999876543333443.444************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1706.38
//
Query:       CCE26903.1  [L=233]
Description: related to endosomal Vps protein complex subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-18   67.0   7.8    1.5e-18   67.0   7.8    1.5  2  Snf7           Snf7
     0.0041   17.2   4.3     0.0087   16.1   4.3    1.5  1  TPR_MLP1_2     TPR/MLP1/MLP2-like protein
  ------ inclusion threshold ------
      0.038   14.2   4.6      0.073   13.2   4.6    1.5  1  Fib_alpha      Fibrinogen alpha/beta chain family
       0.92   10.0   6.6       0.22   12.0   2.8    1.9  2  GPS2_interact  G-protein pathway suppressor 2-interacting dom


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   7.8   3.3e-22   1.5e-18       6     170 ..      17     201 ..      12     204 .. 0.80
   2 ?   -3.0   0.1       1.1   4.8e+03     107     116 ..     218     227 ..     212     231 .. 0.57

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 3.3e-22
                 HHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHCTT-.............HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Snf7   6 Lrkaerkldkkqeslekkikkl...eaelkklakkgn.............kdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamk 88 
                 +rk+   + + +++l++ i      e ++k+++ + +             ++ ++ ++++++r+++  ++l +++a+l++v++++ ++ +  ++  + +
  CCE26903.1  17 MRKCNAVIRQNIRKLDRDITANkqsEFKIKQYIIQADkraqkdpsrskqaQRDVRDFARELVRHRRASSRLITSKAQLNSVQMQVNEAFAVRKIEGSIR 115
                 55555555555555555554320002233444333334444567888888999********************************************** PP

                 HHHHHHHHHHHCTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-....GGTTHHHHHHHHHHHHHHHHHCSH.HHHHHHHTXXX CS
        Snf7  89 qgakamkamnkkvdidkidklmdeiedqmekaeeisEalsrsldda....deedEeeleaeLdaLeqelgdeelldesvklpevPs 170
                  +a +mk  n+ +++++   +m+e++ +++ka++i+E+++++l        e +++e e e+++++ e+++ + + e++ lp +P+
  CCE26903.1 116 ASAGIMKDLNSLIRLPEYAITMRELSTELMKAGIIEEMVEEALPEDgdmlLEDEDAEAEGEVEKVLGEILKTKPKREAAVLPVAPE 201
                 ******************************************954445567788889**************997789999999987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.1
                 HHHHHHHHHH CS
        Snf7 107 dklmdeiedq 116
                 d +md +++ 
  CCE26903.1 218 DAMMDKMRNR 227
                 5556655554 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   4.3   1.9e-06    0.0087       4      77 ..      29     105 ..      26     110 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.9e-06
  TPR_MLP1_2   4 ksleeeikslkeekeeaeaklqklqedlekqaeiakeaq...qkYerelvkhaedvkelqalreelnelkaeiaelk 77 
                 ++l+ +i++ k+++ + ++ + ++ +  +k  ++ k+aq   ++++relv h  ++  l + +++ln+++ +++e+ 
  CCE26903.1  29 RKLDRDITANKQSEFKIKQYIIQADKRAQKDPSRSKQAQrdvRDFARELVRHRRASSRLITSKAQLNSVQMQVNEAF 105
                 566666666666666666666666666666666666666222679****************************9975 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   4.6   1.6e-05     0.073      25     113 ..      16     103 ..      14     118 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
                 CCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHH CS
   Fib_alpha  25 lllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvles 113
                  + k +  ++++++kl ++++ +++s+ ++++++ + ++  +++ + +k+ ++ ++++++el  ++ r   ++++   +++  q  +++
  CCE26903.1  16 QMRKCNAVIRQNIRKLDRDITANKQSEFKIKQYIIQADKRAQKDPSRSKQAQRDVRDFARELV-RHRRASSRLITSKAQLNSVQMQVNE 103
                 688999999****************************************99************.8999999999999999999987765 PP

>> GPS2_interact  G-protein pathway suppressor 2-interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.8   4.8e-05      0.22      23      77 ..      15      69 ..       7      80 .. 0.81
   2 ?   -2.0   0.1       1.1   4.9e+03      50      59 ..     184     193 ..     174     221 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.8e-05
  GPS2_interact 23 vpsrlsKdeLlqnidkvDREiakveqqiskLkkkqkeleeeaakpkeeekpveps 77
                   +++r     + qni k DR+i+   q+  k+k+   + +++a+k +  +k+ +  
     CCE26903.1 15 AQMRKCNAVIRQNIRKLDRDITANKQSEFKIKQYIIQADKRAQKDPSRSKQAQRD 69
                   456677777789**************99999999999999999988777776654 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
  GPS2_interact  50 iskLkkkqke 59 
                    i k k k++ 
     CCE26903.1 184 ILKTKPKREA 193
                    5554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1109  (0.0618551); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1740.40
//
Query:       CCE26904.1  [L=438]
Description: probable PRS5-ribose-phosphate pyrophosphokinases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-42  143.8   0.4    1.7e-35  122.7   0.1    2.3  2  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    1.2e-31  109.1   0.0    2.5e-31  108.0   0.0    1.6  1  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    2.7e-13   49.7   0.1    5.8e-13   48.7   0.1    1.5  1  Pribosyltran    Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.1e-07   0.00066       2      38 ..     280     316 ..     279     325 .. 0.91
   2 !  122.7   0.1   2.9e-39   1.7e-35      70     183 ..     322     435 ..     316     436 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.1e-07
                     GGGEEEEESSGGGHHHHHHHHHHTT-EEEEE------ CS
  Pribosyl_synth   2 yrnavivakspgsakkatsyaerlrlglavihGeqke 38 
                     yr+aviv+ + g ak+at+ a+ l++  a+ih e++ 
      CCE26904.1 280 YRDAVIVSPDAGGAKRATAIADSLKMDFALIHKERRP 316
                     9********************************9875 PP

  == domain 2  score: 122.7 bits;  conditional E-value: 2.9e-39
                     -------EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--HHHHHT-TTEEEE--HH CS
  Pribosyl_synth  70 kekppltvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvlathGllssdaprlleesaidevvvtntipheiqklrcskiktvdisl 164
                     ++   + +vGd++ r+ i+vddl d ++++  aa++lk+ Ga ++y+l thG++s da  +l++said ++vtn++p++ ++  c k++ +d+s 
      CCE26904.1 322 QRNASMMLVGDIANRVCILVDDLGDTANTITRAAKLLKKEGATQVYALLTHGVFSGDAIPRLNASAIDRIIVTNSVPQDEHRRLCPKLEILDVSP 416
                     5567899**************************************************************************************** PP

                     HHHHHHHHHHHT---TT-S CS
  Pribosyl_synth 165 llaeairrihngesmsylf 183
                     ++aeairr+h+ges+s lf
      CCE26904.1 417 IFAEAIRRVHHGESISRLF 435
                     ******************9 PP

>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   4.2e-35   2.5e-31       2      95 ..       6      99 ..       5     111 .. 0.96

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 4.2e-35
  Pribosyltran_N  2 kifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPylgysrqd 95
                    +++ g+s+++L ++++++lg++ ++  +++f+ gE ++ei++svrgkdvfiiqs s +vndnl++l++mi+a++++sakr+taV+P ++ysrq 
      CCE26904.1  6 VLLGGNSHPQLTANVCNMLGIPGCDRILTKFSGGESRCEIKDSVRGKDVFIIQSGSGHVNDNLIDLCIMISACKTGSAKRVTAVVPLFPYSRQP 99
                    7899****************************************************************************************95 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.1   9.7e-17   5.8e-13      27     119 ..     279     367 ..     264     396 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 9.7e-17
                   -GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEE CS
  Pribosyltran  27 ngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpeevr 119
                   +++  v+v ++ gG  +a+++ad L+  +a + k+++  + +e+   +++    l +d+a++ +++VDD+ dt++T+++a++lLk++g+++v 
    CCE26904.1 279 GYRDAVIVSPDAGGAKRATAIADSLKMDFALIHKERRPIKFTEQRNASMM----LVGDIANRVCILVDDLGDTANTITRAAKLLKKEGATQVY 367
                   34555********************************9999999999988....9**********************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3185.43
//
Query:       CCE26905.1  [L=147]
Description: uncharacterized protein CPUR_00374 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-25   87.9   0.1    7.6e-25   87.6   0.1    1.1  1  RNA_pol_Rpb4  RNA polymerase Rpb4
  ------ inclusion threshold ------
      0.095   13.0   0.2        1.2    9.4   0.0    2.0  2  DUF1548       Domain of Unknown Function (DUF1548)
       0.13   12.9   0.0       0.24   12.0   0.0    1.5  1  HTH_32        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb4  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.1   1.3e-28   7.6e-25       2     122 ..      11     125 ..      10     126 .. 0.93

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 1.3e-28
                   E-HHHHHHHHHHHHHHHHCHHHHHTCCCCCHHSHCHTCHHCHHHHHHHHHHHCTHHTTSSHHH......HHHHHHHHTTSTSTHHHHHHHHHCSTSS CS
  RNA_pol_Rpb4   2 LsnsEvllvlkeeleerknkdkkeseddkisekeevkgnlnkilkktleyltnkfsrlkneek......fnelvellksfeLtkaEklqlvnlkPes 92 
                   Ls++Ev+++l+ +  ++++++           k++ ++n++++ ++ l+yl++++++l ++        ++el+e+l+ +eL k E+++++nl+P s
    CCE26905.1  11 LSDYEVYQHLS-DQRNSYKQN-----------KRRGPPNMETVVRELLQYLRTEPNPLSQQPLaytpdcIAELLEKLRPYELSKGEVVMVLNLRPAS 95 
                   9**********.555555664...........689***********************99988999999**************************** PP

                   HHHHHHHSTTGTTTSTSHHHHHHHHHHHHH CS
  RNA_pol_Rpb4  93 avelktlieeleerfedeqleeiLdelkev 122
                   ++ l+t+ie++ erf++eq+e++++++++v
    CCE26905.1  96 VAGLNTIIEDMSERFSEEQQEDMVNIVAQV 125
                   ***************************997 PP

>> DUF1548  Domain of Unknown Function (DUF1548)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.041   2.5e+02      42      91 ..      19      68 ..       4      91 .. 0.71
   2 ?    9.4   0.0   0.00021       1.2      63     110 ..      94     141 ..      87     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.041
     DUF1548 42 lilkkkekYkrllkeFlqaYkasvseLveyileqilessqelkaalsnyl 91
                ++  +++ Yk+ +++   + ++ v eL++y++++    sq+  a+  +++
  CCE26905.1 19 HLSDQRNSYKQNKRRGPPNMETVVRELLQYLRTEPNPLSQQPLAYTPDCI 68
                56788999999999999999999999999998876655555555555544 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00021
     DUF1548  63 asvseLveyileqilessqelkaalsnylledleainlPEteradils 110
                 asv++L   i +     s+e+++ + n++ + l  +++PE+e  d+ +
  CCE26905.1  94 ASVAGLNTIIEDMSERFSEEQQEDMVNIVAQVLGRFDVPEEENGDVEM 141
                 678888788888888889***********9999********9988855 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.1e-05      0.24      13      66 ..      23      82 ..      13      89 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.1e-05
      HTH_32 13 GlegLkdrprrgrprklsdevrariiallreep........rWsprqlaarlaeregvkvSh 66
                 +  +k+ +rrg p+   + v++++++ lr+ep        +++p+ +a+ l++ +++++S+
  CCE26905.1 23 QRNSYKQNKRRGPPN--METVVRELLQYLRTEPnplsqqplAYTPDCIAELLEKLRPYELSK 82
                344555567777664..45555555555557878899999************9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1145.57
//
Query:       CCE26906.1  [L=191]
Description: related to transforming protein rho [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-20   72.6   0.0    3.7e-20   72.2   0.0    1.2  1  Ras       Ras family
    1.8e-06   28.2   0.0    6.7e-06   26.3   0.0    1.8  1  Roc       Ras of Complex, Roc, domain of DAPkinase
    2.6e-05   23.8   0.0      0.061   12.8   0.0    2.1  2  Arf       ADP-ribosylation factor family
     0.0054   15.9   0.2      0.012   14.8   0.1    1.5  2  G-alpha   G-protein alpha subunit
  ------ inclusion threshold ------
       0.03   14.1   0.0      0.054   13.2   0.0    1.5  1  AAA_24    AAA domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0     1e-23   3.7e-20       1     160 [.      11     173 ..      11     175 .. 0.93

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 1e-23
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEE.EEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdf.ytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveei 97 
                 Kl+l+Gd+ +GKt++l r   ++ ++       +d+ ++ +i++++k+++le  DT   ++++ l +      ++i+l+ydi++r s+ n+k  wv+e+
  CCE26906.1  11 KLLLLGDEKCGKTTFLSRLSAGERTNPIMLLRDMDQpFVFNIDLRDKKYRLEFSDTSSPDNWRLLDP------DVIVLCYDISQRLSLINMKrYWVDEV 103
                 89*********************999998888888537889*********************99865......799***************989***** PP

                 HHHST..TTSEEEEEEETTTGGG....G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  98 krvae..envpivLvGnKvDlee....kravsteegeelakelg.lkfletSAktnenveeafeellrei 160
                 k++ +  +++piv++G K Dl++    +  +  +e+ ++a+++   +++e+SA t e ++ afe++ +++
  CCE26906.1 104 KKTFKrsDTLPIVVLGLKRDLRSeqdpNGIIYPQEAYQVAQSMRvDRYVECSATTGELLRPAFEDICKTA 173
                 **9999999*************97777778**************779*******************9987 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.9e-09   6.7e-06       1     119 [.      11     123 ..      11     124 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.9e-09
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE.GHHH...HCH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd.srss...enl 95 
                 K++l+Gd++ GKt++l+r+  ++ ++       +d  +  v +i+      + kk++l++ Dt+  ++ r l        ++++l+yd s++    +  
  CCE26906.1  11 KLLLLGDEKCGKTTFLSRLSAGERTNPIMLLRDMD--QPFVFNIDL-----RDKKYRLEFSDTSSPDNWRLLD------PDVIVLCYDiSQRLsliNMK 96 
                 89******************998876655444444..333444443.....336799**********999885......599******63332233456 PP

                 HHHHHHHHHHCSSS...-EEEEEE-TT CS
         Roc  96 keWlkelkkvagks...pvilvgnkiD 119
                 ++W++e+kk  ++s   p++++g k D
  CCE26906.1  97 RYWVDEVKKTFKRSdtlPIVVLGLKRD 123
                 89******9977653457888888887 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.7e-05     0.061      13      41 ..       8      36 ..       2      65 .. 0.90
   2 !    9.3   0.0    0.0002       0.7      84     173 ..      79     171 ..      70     173 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
                TEEEEEEEESTTSSHHHHHHHHHHSSCEE CS
         Arf 13 kelrilllGLDnaGKtTilkklkleelvt 41
                + +++lllG ++ GKtT l +l+ +e ++
  CCE26906.1  8 QVVKLLLLGDEKCGKTTFLSRLSAGERTN 36
                5689******************9988665 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0002
                 EEEEEEETT-CTTHHHHHHHH.HHHCTS.GCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS.SSSSEEEEEEBTTTTBTHHHHHHHHHH CS
         Arf  84 avifvvDsadreRleeakeeL.kallee.eelkevallvlaNKqDlpealseeelrellgleelk.gkrkleiqkcsavkgeglkeglewlse 173
                 +++ + D ++r  l ++k+   +++ ++ ++  + +++vl+ K Dl++  + + +    + +++  + r    ++csa++ge l  ++e +++
  CCE26906.1  79 VIVLCYDISQRLSLINMKRYWvDEVKKTfKRSDTLPIVVLGLKRDLRSEQDPNGIIYPQEAYQVAqSMRVDRYVECSATTGELLRPAFEDICK 171
                 566666666665555555433023322213445789***********************9999983445556899**********99998876 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   3.3e-06     0.012      22      43 ..       8      29 ..       2      36 .. 0.87
   2 ?   -1.5   0.0       0.3   1.1e+03     134     150 ..      95     110 ..      31     178 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.3e-06
                .EEEEEEEESTTSSHHHHHHHH CS
     G-alpha 22 revkllllGqseSGKsTilkql 43
                + vkllllG +++GK+T+l  l
  CCE26906.1  8 QVVKLLLLGDEKCGKTTFLSRL 29
                579***************9765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.3
                 HHHHCCSHHHHHHHCCG CS
     G-alpha 134 ikaLwndpgiqelyerr 150
                 +k+ w d+ ++++++r+
  CCE26906.1  95 MKRYWVDE-VKKTFKRS 110
                 33334333.33333333 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.5e-05     0.054       3      30 ..      10      41 ..       8      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
      AAA_24  3 lkiliyGpsgiGKTtlakel....gpkplfid 30
                +k+l+ G+++ GKTt++++l      +p+++ 
  CCE26906.1 10 VKLLLLGDEKCGKTTFLSRLsageRTNPIMLL 41
                589*****************998866666663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1552.95
//
Query:       CCE26907.1  [L=619]
Description: related to pseudouridine synthase 3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-34  116.3   0.0    5.4e-33  113.7   0.0    2.3  3  PseudoU_synth_1  tRNA pseudouridine synthase
  ------ inclusion threshold ------
          2    7.9  11.6       0.24   11.0   5.9    2.2  2  SR-25            Nuclear RNA-splicing-associated protein
        3.1    7.9   5.1        1.3    9.2   0.1    2.3  2  DUF3408          Protein of unknown function (DUF3408)


Domain annotation for each model (and alignments):
>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.41   2.4e+03      47      68 ..     133     155 ..      85     167 .. 0.71
   2 ?   -3.2   0.0       1.9   1.1e+04      79     107 ..     228     256 ..     227     257 .. 0.88
   3 !  113.7   0.0     9e-37   5.4e-33       1     108 []     314     446 ..     314     446 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.41
  PseudoU_synth_1  47 tvkgsgFldhqVRamvgvl.fav 68 
                      + +  g++d++V a ++v+ + v
       CCE26907.1 133 EYSKCGRTDRGVSAFGQVIgLRV 155
                      55556899999999999985555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.9
  PseudoU_synth_1  79 kellnakkrkkiavetapavglvlfhvrY 107
                      +++ln  ++++i +   ++ +  +f++r+
       CCE26907.1 228 PRILNRLLPDDIRILAWCPSPPADFSARF 256
                      57899999999999999999999999999 PP

  == domain 3  score: 113.7 bits;  conditional E-value: 9e-37
  PseudoU_synth_1   1 AakelvGthdfgsfckqkqek..kntvrtileaaieevsgeekell......................vvtvkgsgFldhqVRamvgvlfavgq 70 
                      Aak+++G+hdf++fck ++ k  +n+ r+i+e +i +v + ++ l+                      +++v+gs+Fl+hq+R+mv+vlf+vgq
       CCE26907.1 314 AAKRFEGEHDFRNFCKVDPAKqiSNFRRRIFESDIVQVRDASGVLPflqnqqspcgssveegpypqvyYFHVRGSAFLWHQIRHMVAVLFLVGQ 407
                      8****************************************88888************************************************ PP

  PseudoU_synth_1  71 gklspedvkellnakk.rkkiavetapavglvlfhvrYd 108
                        ++p  v+ell++++ + ++++ +a++v+lvl++++++
       CCE26907.1 408 RLEDPAVVSELLDTQRtPCRPSYVMAEEVPLVLWDCIFP 446
                      ***************99*********************8 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3      0.22   1.3e+03      30     100 ..      39      68 ..      15      78 .. 0.36
   2 ?   11.0   5.9     4e-05      0.24      68      83 ..     284     299 ..     274     326 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.22
       SR-25  30 sssasksqsrkassasekeeerskekkkkkrrrssssssssssssssssssssssssdd..rkkrgk.kkdkkk 100
                 ++s+s+                                                 s+d+  ++k+ k  ++kk+
  CCE26907.1  39 AASTST--------------------------------------------HDETLSEDGapDNKTPKgAQAKKR 68 
                 222222............................................222222222221111110111111 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 4e-05
       SR-25  68 ssssssssssssssss 83 
                 ssssssssssssssss
  CCE26907.1 284 SSSSSSSSSSSSSSSS 299
                 2222222222222222 PP

>> DUF3408  Protein of unknown function (DUF3408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00021       1.3      21      76 ..      27      81 ..      12      86 .. 0.78
   2 ?   -0.7   1.2      0.24   1.4e+03      26      46 ..     191     211 ..     157     220 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00021
     DUF3408 21 peeeetpakeekeeakeeeeeeaeeeeekekkekkkrisekkrktsledYeetFLk 76
                +  +e p++ +  +++ ++ e+ +e+ ++ +k++k  +++kkrk +   Y ++F++
  CCE26907.1 27 KRRTEAPQPVVGAASTSTHDETLSEDGAPDNKTPK-GAQAKKRKMDPSRYSTRFIA 81
                45677778888888888888888888888888776.99999*************86 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.24
     DUF3408  26 tpakeekeeakeeeeeeaeee 46 
                   a+e++ ++++e+ ee+eee
  CCE26907.1 191 AGAEEVAGGKETEAGEEQEEE 211
                 112222222222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4117.41
//
Query:       CCE26908.1  [L=257]
Description: uncharacterized protein CPUR_00377 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-26   92.5   0.0    1.6e-26   91.9   0.0    1.2  1  PIG-H     GPI-GlcNAc transferase complex, PIG-H component
  ------ inclusion threshold ------
      0.076   12.1   2.6       0.11   11.6   2.6    1.3  1  vMSA      Major surface antigen from hepadnavirus


Domain annotation for each model (and alignments):
>> PIG-H  GPI-GlcNAc transferase complex, PIG-H component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   1.8e-30   1.6e-26       1      72 []     159     230 ..     159     230 .. 0.90

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 1.8e-30
       PIG-H   1 SllvlrglGvQlsssyl.srllpf.sggtsrrFiplekirdvvInEafkgfeViyyLaivvegeeekklvvvFp 72 
                 SllvlrglGvQ+s+s +  + l + +gg ++rFip+ekird+++nEaf+g+eV+yyL++vvege e  lvvvFp
  CCE26908.1 159 SLLVLRGLGVQTSESPSwGMSLGWgTGGATTRFIPTEKIRDIFVNEAFRGMEVRYYLVVVVEGEGE--LVVVFP 230
                 9**************445444445588899*********************************999..*****8 PP

>> vMSA  Major surface antigen from hepadnavirus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.6   1.2e-05      0.11     252     358 ..      34     140 ..       5     152 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.2e-05
        vMSA 252 rrfiifllilllalifllvl..ldyqsilpvc.pllpgtsttstgpcrtctipaqgtsmfpsccctkpsdgnctcipipsswalekllwesvsvrfssl 347
                 r  i++ll lllal+ +l+l  l   + +  +     ++++t+++ + tc++ a  +s  p+ + t+ + +        +  ale+++       f  +
  CCE26908.1  34 R--ILLLLRLLLALAVILLLhaLWTTTTIAETaAAAAAATATTAAAAVTCSLSATTSSTGPCLAHTHTAAAFLDSPLQIAQSALERYQRSPLGEVFRRI 130
                 4..5555666666655555411444444444404444444555667889*****999999988888887776655444456799999999999999999 PP

        vMSA 348 sllvpfvqwfv 358
                 ++ +p v  +v
  CCE26908.1 131 ASSLPPVV-LV 140
                 88887665.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1211  (0.0675442); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1983.51
//
Query:       CCE26909.1  [L=1591]
Description: uncharacterized protein CPUR_00378 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.46
# Mc/sec: 10351.05
//
Query:       CCE26910.1  [L=115]
Description: uncharacterized protein CPUR_00379 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 858.45
//
Query:       CCE26911.1  [L=158]
Description: uncharacterized protein CPUR_00380 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1243.01
//
Query:       CCE26912.1  [L=641]
Description: uncharacterized protein CPUR_00381 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4812.46
//
Query:       CCE26913.1  [L=235]
Description: uncharacterized protein CPUR_00382 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1752.79
//
Query:       CCE26914.1  [L=884]
Description: uncharacterized protein CPUR_00383 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.44   10.4   5.6       0.87    9.4   5.6    1.4  1  SKA1      Spindle and kinetochore-associated protein 1


Domain annotation for each model (and alignments):
>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.6   4.9e-05      0.87      30     127 ..     378     474 ..     373     482 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 4.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-S--S CS
        SKA1  30 aevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkktaassaeeskssspeeeeeteskkekeeeaekakkpkkreike 127
                 ++++ l+++l+ ++++lq+++++i++   e +a++ +q+ +q+ ++nl ++l+ +++   + e +++ + ++ +++ k++  ++a+++k ++++++ +
  CCE26914.1 378 KQIEVLRSSLRYFEDQLQYNKHQIDEKGMETQAKMVRQH-IQQFEKNLKAQLETEQTHYPNYEHQADASGSTPDHNGKNSTSTTANDTKSERGSSQSS 474
                 68999*******************998878888886665.************9887776665555555554554555555555556666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1063  (0.0592894); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 6098.37
//
Query:       CCE26915.1  [L=136]
Description: probable ribosomal protein L26 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-38  128.6   3.4    1.2e-37  128.2   3.4    1.2  1  Ribosomal_L26  Ribosomal proteins L26 eukaryotic, L24P archae
    4.3e-07   29.7   0.3    1.1e-06   28.4   0.3    1.7  1  KOW            KOW motif
  ------ inclusion threshold ------
       0.14   12.2   0.1       0.16   12.0   0.1    1.2  1  DUF1223        Protein of unknown function (DUF1223)


Domain annotation for each model (and alignments):
>> Ribosomal_L26  Ribosomal proteins L26 eukaryotic, L24P archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.2   3.4   2.1e-41   1.2e-37       1      81 [.       9     121 ..       9     122 .. 0.99

  Alignments for each domain:
  == domain 1  score: 128.2 bits;  conditional E-value: 2.1e-41
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxxxxxxxxxxxxxxxxx RF
  Ribosomal_L26   1 sssrrkqrKahfnapshirrklmsapLskeLrekygvrslpir................................gvtrekangttvpvgihpSkv 64 
                    sssrrk+r ahf+aps++rr +msapLskeLreky+vrs+p+r                                +vtr+k+ g++vp+gihpS+v
     CCE26915.1   9 SSSRRKSRAAHFKAPSSERRVIMSAPLSKELREKYNVRSIPVRkddevkivrgsnkdsegkvtsvyrlkyiihieRVTRDKSSGQSVPLGIHPSNV 104
                    89********************************************************************************************** PP

                    xxxxxxxxxxxxxxxxx RF
  Ribosomal_L26  65 vItklklDkdrkkiLer 81 
                    vItklklDkdr++iL r
     CCE26915.1 105 VITKLKLDKDRENILAR 121
                    ***************98 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.3   1.8e-10   1.1e-06       1      32 []      52      83 ..      52      83 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.8e-10
                TTSEEEESSSTTTTCEEEEEEEETTTTEEEEE CS
         KOW  1 pGdhVkVvsGphkGktGkVvkvdqhkvrVfvd 32
                ++d+Vk+v+G +k+ +GkV++v++ k++++++
  CCE26915.1 52 KDDEVKIVRGSNKDSEGKVTSVYRLKYIIHIE 83
                69****************************97 PP

>> DUF1223  Protein of unknown function (DUF1223)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.6e-05      0.16      90     166 ..       3      75 ..       1     108 [. 0.69

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHHTT-S--S-EEEEE-SS.SEEEEE---S....S-EEEEEEEEEEEEEEE---------EEEEEEEEE CS
     DUF1223  90 eleaaisaaaaaaaaakvkvklsregdetlevsveaaaaseekeadvllvlvekeeevkvkrGeNagrtlthdnvvr 166
                 ++++ +s+++++++aa++k+ +s e++  +++ ++++    +++++v  + v+k++evk+ rG N++ + + + v r
  CCE26915.1   3 KVSKNVSSSRRKSRAAHFKAPSS-ERRVIMSAPLSKE---LREKYNVRSIPVRKDDEVKIVRGSNKDSEGKVTSVYR 75 
                 67777888887765555555555.2222333333333...369***********************98766666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1059.20
//
Query:       CCE26916.1  [L=270]
Description: probable cytochrome-c oxidase assembly protein (COX11) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-60  201.7   0.1      1e-59  200.9   0.0    1.4  2  CtaG_Cox11   Cytochrome c oxidase assembly protein CtaG/Cox11
  ------ inclusion threshold ------
       0.16   11.7   0.1       0.25   11.1   0.1    1.2  1  Corona_NS3b  ORF3b coronavirus protein


Domain annotation for each model (and alignments):
>> CtaG_Cox11  Cytochrome c oxidase assembly protein CtaG/Cox11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.94   8.4e+03      65      65 ..      61      61 ..      43      86 .. 0.50
   2 !  200.9   0.0   1.1e-63     1e-59       1     151 []      98     255 ..      98     255 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.94
  CtaG_Cox11 65 p 65
                 
  CCE26916.1 61 Q 61
                1 PP

  == domain 2  score: 200.9 bits;  conditional E-value: 1.1e-63
  CtaG_Cox11   1 avPlyrvfCeatGlggktekaaae........ksaavkvdeertevtveFdadvseklpwefkpeqrslevkpGetalafytaknksdkpiigqavysv 91 
                 +vPly+++C++tG+gg++ +a+          +s+ v v++++ +++v+F+a vs++lpw+f+p+qr+++v pGetalafy+akn+ d++iig+a+ysv
  CCE26916.1  98 SVPLYKMICQTTGWGGQPIRAHGGpssdddslASRLVPVTSAK-RIKVNFNACVSDDLPWKFTPQQREVRVLPGETALAFYKAKNRGDRDIIGVATYSV 195
                 59****************9776555444433333377788888.6****************************************************** PP

  CtaG_Cox11  92 aPeeaakyfnKieCFCFeeqkLkpgeevdlpvlFfidpelaedpelkkvkeitLsYtffe 151
                 +P++ a+yf+Ki+CFCFeeq+L++geevd+pv+F++dp+l +d +++ v+++tL+Ytff+
  CCE26916.1 196 TPAQSAAYFSKIQCFCFEEQRLNAGEEVDMPVFFYLDPDLLNDLNMQGVDQVTLNYTFFK 255
                 ***********************************************************6 PP

>> Corona_NS3b  ORF3b coronavirus protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   2.8e-05      0.25       6      62 ..      41      97 ..      37     105 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.8e-05
  Corona_NS3b  6 flytldsvvedtaekaklsqesvlaleenvvsareasnvtefllaslfvvflaLfka 62
                 f+ ++++  + +a++++ +q+    +e+++ + r++s  +++  +s+ v  laL  a
   CCE26916.1 41 FRRKISTSARRSAQQQQQQQQGKSLMEQHLAERRKKSRSAAYYTISVIVGTLALSYA 97
                 889999***********************************************9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1160  (0.0646996); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1944.72
//
Query:       CCE26917.1  [L=469]
Description: probable actin-related protein 3 (ARP3) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-82  275.2   0.0    2.9e-48  164.5   0.0    2.0  2  Actin     Actin
  ------ inclusion threshold ------
      0.037   12.9   0.1        1.8    7.3   0.1    2.1  2  MreB_Mbl  MreB/Mbl protein


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.5   0.0   3.2e-52   2.9e-48      12     190 ..      43     266 ..      41     273 .. 0.95
   2 !  108.9   0.0   2.4e-35   2.2e-31     231     404 ..     274     459 ..     268     461 .. 0.88

  Alignments for each domain:
  == domain 1  score: 164.5 bits;  conditional E-value: 3.2e-52
       Actin  12 GssttraGyagedaPkavipslvgkprgrkvea...................................klyvgdealt..krpelevrspvedGvvedw 73 
                 G+++ ++G+ag+d+P  v+p++++ +  +  +                                    ++y+gdeal+  + p++ +++p+++G +e+w
  CCE26917.1  43 GTGFSKLGFAGNDSPSFVFPTAIATKGPTGGSGgtgsgrpavankpsfltggagsgghlsgkrgtedlDFYIGDEALSaaSGPGYGLHYPIRHGQIENW 141
                 89999*******************877776555789999************************************8876469***************** PP

       Actin  74 daveelwehvlkeelkvdpeehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgks........tglvvDsGasvtsvvpVldGyv 164
                 d++e+ w++++++ l+v+pe+h +lltepplnpp++re+++Ei+fE+f+++++y+a +avl++ as  s        tg v+DsG++vt+v+pV +Gyv
  CCE26917.1 142 DHMERFWSNSIFKYLRVEPEDHYFLLTEPPLNPPENRENTAEIFFESFNCAGMYIAVQAVLALAASWTSskvtdrslTGTVIDSGDGVTHVIPVAEGYV 240
                 *************************************************************99888777888*************************** PP

       Actin 165 LkkairrsdlgGkaLteqlkellssk 190
                 +  +i++ +++G+++t  +++ll+++
  CCE26917.1 241 IGSSIKSIPIAGRDITYFVQSLLRDR 266
                 **********************9986 PP

  == domain 2  score: 108.9 bits;  conditional E-value: 2.4e-35
       Actin 231 evleeiKesvcevsedpeg...deeksssspeks.YeLPDgs..eiklgeeRfkvpEiLFdpsligsesaleeekskllgiselivaainacdvdlrpe 323
                 ++ ++iKe+ c+v  d+ +   +++ ++++++k+    P g+  ++++g eRf +pEi F+p+++ s+          + ++ ++   i+++++d+r+ 
  CCE26917.1 274 KTAQDIKEEYCYVCPDIVKefgKYDRDRERFAKHvVSHPGGRqvTVDVGYERFLAPEIFFNPEIYSSDFL--------TPLPVVVDGVIQQSPIDVRRG 364
                 57899************986654444445555442578***9778899**************99888654........789****************** PP

       Actin 324 LlanivvtGGnsllpglteRlekelaql...............askgvkvkiiapeeerkysaWiGGSiLAslgtfqqlwvskqEYeEqGssvver 404
                 L++niv++GG++l++ +  Rl++++++l                s g+ v++i+ + +++++ W+GGS+L+++++f++ + +k+EY+E+G+s+v+r
  CCE26917.1 365 LYKNIVLSGGSTLYKDFGRRLQRDIKHLvdarirasevrsggaRSGGLDVQVITHK-RQRHGPWFGGSLLGQTPEFRSYCHTKAEYQEYGPSIVRR 459
                 ****************************99998888877777666667*******9.9************************************87 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0002       1.8     147     214 ..     220     289 ..     188     298 .. 0.85
   2 ?    3.3   0.0    0.0034        31     259     301 ..     352     393 ..     341     409 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0002
                 EEEEEE-SS-EEEEEEETTEEEEE..EEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS-- CS
    MreB_Mbl 147 nmvvdiGggttevavislggivts..ksvrvaGdeldeaiikyirkkynlliGertaekikieigsavke 214
                   v+d G g t v  ++ g ++ s  ks+ +aG ++   + +++r + +     +ta++ik e  +++++
  CCE26917.1 220 GTVIDSGDGVTHVIPVAEGYVIGSsiKSIPIAGRDITYFVQSLLRDRGEADSSLKTAQDIKEEYCYVCPD 289
                 4699*********999999998543389*********************************998888766 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0034
                 HHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-E CS
    MreB_Mbl 259 evLektppeLaadivdrgivltGGgallkgldkllseetglpv 301
                  v+++ p +    ++ + ivl+GG++l k++ + l++ ++  v
  CCE26917.1 352 GVIQQSPIDVRRGLY-KNIVLSGGSTLYKDFGRRLQRDIKHLV 393
                 566677777777766.569****************99887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3303.63
//
Query:       CCE26918.1  [L=359]
Description: probable ALCOHOL DEHYDROGENASE I-ADH1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-27   95.3   0.2    4.3e-27   94.2   0.2    1.6  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    1.8e-24   86.1   0.5    3.1e-24   85.4   0.5    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
    1.1e-05   26.5   0.0    1.9e-05   25.7   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.017   14.5   0.8      0.026   13.8   0.8    1.3  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain
       0.12   11.8   0.6       0.29   10.6   0.4    1.7  2  adh_short     short chain dehydrogenase
       0.18   11.1   1.7       0.26   10.6   0.4    1.9  2  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.2   1.4e-30   4.3e-27       1     108 [.      34     147 ..      34     148 .. 0.95

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 1.4e-30
                 TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS.....--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTSS-S CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk.....lkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvsldG 93 
                 p+evl+ v ++g+C++Dlh + g++ l++klpl+ GHE +G+v++ g+ ++      l+ Gd+V +++l   c +C++C++ +e+lC++a l g+++dG
  CCE26918.1  34 PDEVLVHVLYSGVCHTDLHAMLGDWPLPTKLPLVGGHEGAGVVVARGSLIDAddasdLQLGDKVGIKWLNGsCMHCSYCTNMDESLCQQALLSGYTVDG 132
                 689********************************************9888788888**********99877*************************** PP

                 SSBSEEEECGGGEEE CS
       ADH_N  94 gfaeyvvvpekklvk 108
                 +f++y v++++++++
  CCE26918.1 133 SFQQYAVAKAAHVAR 147
                 *********999875 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.5     1e-27   3.1e-24       1     129 [.     190     321 ..     190     322 .. 0.94

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 1e-27
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEET.TTC.HHHHHHHHHTT.TSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadeviny.kea.dlverikeltg.gegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee 96 
                 g+G +a+q+Aka+G +v+a+d+ +ek++l+ +lGa ++++  ++  +lve++k++   g g+++v+ ++++++ +++a+++++ +G++v++G++ + + 
  CCE26918.1 190 GLGCFAIQYAKAMGLHVVAIDGGAEKRKLCLELGASVYVDFmESGgSLVEDVKRASVdGLGPHAVLLVAANEKPFQQATQYVRAHGTVVCIGLPANANF 288
                 89***************************************75556899999988855***********************************888888 PP

                 .EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  97 .fdlrnlllkeksilGsllgslreefkealdlla 129
                   ++++ + + ++i+Gs +g+ r + +eald++a
  CCE26918.1 289 sAPVFDTVVRMITIKGSYVGN-RADTAEALDFFA 321
                 89*******************.*********987 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   6.4e-09   1.9e-05      16     133 .]     244     355 ..     226     355 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 6.4e-09
                   HHH-TT-EEEEEES-H.HHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-....-HHHHHHHHHHHHHHH----EEE CS
  ADH_zinc_N_2  16 aatggegvDvvldtvg.gealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas...aqadileelaalieeGklrpvvdr 108
                   a+++g g  +vl  ++  + + +++ ++++ +G++v+ig        +++a++      +++ ++++k s   ++ad  +e +++++ G ++++   
    CCE26918.1 244 ASVDGLGPHAVLLVAAnEKPF-QQATQYVRAHGTVVCIGL-------PANANFSAPVFDTVVRMITIKGSyvgNRAD-TAEALDFFARGLIKVPYK- 330
                   444555555666665635555.9999***888******94.......566666777777888888777778888999.****************97. PP

                   EEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2 109 vfpleeaaeAhrylesgrarGKiVl 133
                   + +l+e+++ ++++ +g+  G+ ++
    CCE26918.1 331 TVGLSELQDVYKLMSEGKIAGRYIV 355
                   9********************9886 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.8   8.8e-06     0.026      30      78 ..     181     239 ..     164     281 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.8e-06
                  EEEEESTS.HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEE..........H CS
  AlaDh_PNT_C  30 kvlviGgG.vaGlqAiatakglgakVtvlDvrparleqleslgakfvev..........l 78 
                  +v ++G+G   G  Ai+ ak++g +V+++D  +++++   +lga+ v v           
   CCE26918.1 181 TVAIVGAGgGLGCFAIQYAKAMGLHVVAIDGGAEKRKLCLELGAS-VYVdfmesggslvE 239
                  58899975268*********************9999999999998.65544443444331 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   9.7e-05      0.29       2      43 ..     181     221 ..     180     245 .. 0.86
   2 ?   -3.7   0.0       2.3     7e+03      26      48 ..     253     275 ..     248     281 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.7e-05
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevake 43 
                 +v ++Ga++G+G    +   ++G +vv++d  +ek  +++ e
  CCE26918.1 181 TVAIVGAGGGLGCFAIQYAKAMGLHVVAIDGGAEKR-KLCLE 221
                 899***************************999988.44444 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.3
                 EEEEEESCHHHHHHHHHHHHHTT CS
   adh_short  26 kvvvvdrseekleevakelkeeg 48 
                  v++v+ +e++ +++ + ++++g
  CCE26918.1 253 AVLLVAANEKPFQQATQYVRAHG 275
                 45668888888888888777654 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.79   2.4e+03     126     136 ..      77      87 ..      74      90 .. 0.85
   2 ?   10.6   0.4   8.7e-05      0.26      35      73 ..     178     217 ..     168     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.79
                   SS-GGGB-HHH CS
  2-Hacid_dh_C 126 taRGglvdeea 136
                   +aRG+l+d ++
    CCE26918.1  77 VARGSLIDADD 87 
                   8*******986 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 8.7e-05
                   TTSEEEEES-S.HHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C  35 sgktvGiiGlG.rIGqavakrlkafgmkviaydrskkkee 73 
                   +g+tv+i+G+G  +G  +++++ka+g++v+a+d   +k++
    CCE26918.1 178 AGQTVAIVGAGgGLGCFAIQYAKAMGLHVVAIDGGAEKRK 217
                   79*******9637*******************98766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2526.67
//
Query:       CCE26919.1  [L=80]
Description: related to antioxidant protein and metal homeostasis factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-16   60.6   0.4    2.6e-15   56.6   0.1    2.0  2  HMA       Heavy-metal-associated domain
  ------ inclusion threshold ------
      0.076   13.4   0.3       0.16   12.3   0.1    1.7  2  Fer2_BFD  BFD-like [2Fe-2S] binding domain


Domain annotation for each model (and alignments):
>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.1     3e-19   2.6e-15       2      62 .]       8      64 ..       7      64 .. 0.96
   2 !    3.6   0.1      0.01        89      25      40 ..      64      79 ..      63      80 .] 0.90

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 3e-19
         HMA  2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62
                ++v  m+C+gC++++e+vLs+++g+es++v+l+t+t+ V++  +    ++++++i k+g+k
  CCE26919.1  8 FNV-TMTCGGCSGAIERVLSRMEGIESYDVSLDTQTARVVTGLPY---EDVLAKIAKTGKK 64
                788.9************************************9999...99********996 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.01
         HMA 25 gVesvkvdlatktvtV 40
                 V+s++ d ++++v+V
  CCE26919.1 64 KVNSATADGEARSVEV 79
                699***********99 PP

>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.8e-05      0.16      32      50 ..       8      26 ..       5      27 .. 0.87
   2 ?   -1.8   0.0      0.48   4.3e+03      11      25 ..      63      77 ..      52      78 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
    Fer2_BFD 32 tkagtgCggCrpaieeiLa 50
                 ++++ CggC  aie++L 
  CCE26919.1  8 FNVTMTCGGCSGAIERVLS 26
                578999**********997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.48
    Fer2_BFD 11 geIrdairrag.lttv 25
                +++  a  ++g +++v
  CCE26919.1 63 KKVNSAT-ADGeARSV 77
                4444455.44445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 610.94
//
Query:       CCE26920.1  [L=310]
Description: uncharacterized protein CPUR_00389 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2326.56
//
Query:       CCE26921.1  [L=465]
Description: probable sterol carrier protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-15   56.6   0.1    2.3e-13   50.1   0.0    3.0  2  Thiolase_N       Thiolase, N-terminal domain
    9.4e-11   41.4   0.1    2.6e-10   40.0   0.1    1.8  1  Thiolase_C       Thiolase, C-terminal domain
      8e-07   28.8   0.2      2e-05   24.4   0.0    2.7  2  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
     0.0074   16.3   1.2       0.23   11.5   0.0    2.9  3  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
  ------ inclusion threshold ------
      0.052   13.1   0.3       0.14   11.7   0.3    1.7  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
      0.089   11.5   0.4        0.2   10.3   0.1    1.6  2  SpoVAD           Stage V sporulation protein AD (SpoVAD)


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   7.8e-17   2.3e-13       1     258 [.       9     231 ..       9     233 .. 0.82
   2 ?    1.0   0.0     0.075   2.2e+02      18      50 ..     267     299 ..     259     313 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 7.8e-17
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsi 99 
                 v++ +  +t++ k     +++ +++L+ ea+ ++l +a ++++++++ i       + +++  + +  + g+  ++p   vn+ cs g +++a+a + i
  CCE26921.1   9 VYVLGVGMTKFIK---PRNQVDYTQLGFEAGIKALLDAHINYDSIEQGIACY---CFGDSTCGQRVFYQFGM-TKIPLYNVNNNCSTGSTGLAMARNLI 100
                 6677888888888...889999**********************99866554...455666777889999**.9************************* PP

                 HTTSHSEEEEEEEEESTTS-EEETCTTTTG.GSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTB CS
  Thiolase_N 100 aageadvvvagGvEsmsnaptaestdvrsg.lklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdei 197
                 a+g+a++++++G E+m+  + + + d r++ l    +++ ++  +d  +     ++ G +++++ ++y++  e+ +e A  +h +++ ++ a+ F++ +
  CCE26921.1 101 ASGAANCIMVVGFEKMTPGSLQRRWDDRENpLGTTVSIVAETRGWD-ATAPGAAQMFGNAGREYKEQYGAHDEDFAEIARVNHVHSSRNPYAQ-FRE-V 196
                 ******************9999998877441444555555666666.3344466788************************************.987.4 PP

                 E-EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEE CS
  Thiolase_N 198 vPvkvkgkkgkktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllms 258
                               + ++ ++++ ++ +L kl             ++++ sDG aa +l+s
  CCE26921.1 197 -------------YSLEQIMQAPGVFAPLTKL-------------QCCPTSDGGAAAILVS 231
                 .............5677777777777777777.............7777777777777776 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.075
                 TTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEE CS
  Thiolase_N  18 lkdlsaeeLlaealkallekagvdpeevdeviv 50 
                   dl+  e+ + a++a++++a ++p++v+ v +
  CCE26921.1 267 AIDLMGYEMTQFAVRAAMAEAHISPADVQVVEL 299
                 55778889999****************998755 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   8.7e-14   2.6e-10      25      98 ..     277     368 ..     264     396 .. 0.90

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 8.7e-14
                 HHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G..................GGBSTT--HHHH-B-TTTHHHHHHHHHHHHHH CS
  Thiolase_C  25 ayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl..................ekvNvnGGaialGHPlGasGaRivvtllselk 98 
                  +a+++++ +a ++ +d++++E+++ F+a  + ++ al+l +                    vN  GG i+ GHPlGa+G  +++ l+ +l+
  CCE26921.1 277 QFAVRAAMAEAHISPADVQVVELHDCFSANQMIAMDALGLCKpgkahelvrggdityggkYIVNPSGGLISKGHPLGATGIAQCAELVWHLR 368
                 5799************************************999***************9999*********************999998886 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   6.6e-09     2e-05       2      38 ..      81     117 ..      80     130 .. 0.92
   2 ?    1.4   0.0     0.095   2.8e+02      49      64 ..     217     232 ..     211     258 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6.6e-09
                  EEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGG CS
  ACP_syn_III   2 DlnaaCsgfvyalsvAdaliesgaakrvLvigaetls 38 
                   +n++Cs+  ++l++A++li+sgaa++++v+g e+++
   CCE26921.1  81 NVNNNCSTGSTGLAMARNLIASGAANCIMVVGFEKMT 117
                  689*******************************997 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.095
                  HTTB-EEEEEEEEEEE CS
  ACP_syn_III  49 avlfGDGAgAvvleas 64 
                  +   +DG++A++l  +
   CCE26921.1 217 CCPTSDGGAAAILVSQ 232
                  4556787666666543 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.2   3.7e+03      77     103 ..      85     111 ..      79     113 .. 0.81
   2 !   11.5   0.0   7.6e-05      0.23      26      51 ..     276     301 ..     248     307 .. 0.81
   3 ?    2.3   0.0     0.056   1.7e+02      88     106 ..     349     367 ..     347     370 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.2
                      TSEEE-THHHH-B-GGGHHHHHHHHHH CS
  Ketoacyl-synt_C  77 plavgSvKsniGHleaAaGvaelikvv 103
                      ++  gS+   + + + A+G+a++i vv
       CCE26921.1  85 NCSTGSTGLAMARNLIASGAANCIMVV 111
                      577788888899999999999999886 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.6e-05
                      HHHHHHHHHHHHT--GGGEEEEE-SS CS
  Ketoacyl-synt_C  26 qaraiekalaeagvdpedvdyveahg 51 
                       + a+++a+aea+++p+dv++ve h+
       CCE26921.1 276 TQFAVRAAMAEAHISPADVQVVELHD 301
                      46679********************8 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.056
                      -B-GGGHHHHHHHHHHHHH CS
  Ketoacyl-synt_C  88 GHleaAaGvaelikvvlal 106
                      GH ++A G+a+++ +v  l
       CCE26921.1 349 GHPLGATGIAQCAELVWHL 367
                      9***********9998766 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   4.7e-05      0.14     152     206 ..      62     117 ..      12     124 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.7e-05
                    THHHHHHHHHHT--.SSEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE--- CS
  ketoacyl-synt 152 nviagrisyalglr.GpsvtvdtACsSslvavhaavqslrsgeadvalaGGvelll 206
                    ++   r+ y++g++  p + v   Cs++ + +++a + + sg a ++ + G e ++
     CCE26921.1  62 STCGQRVFYQFGMTkIPLYNVNNNCSTGSTGLAMARNLIASGAANCIMVVGFEKMT 117
                    55556777777775258899999****************************99654 PP

>> SpoVAD  Stage V sporulation protein AD (SpoVAD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   6.7e-05       0.2      84     131 ..      66     111 ..      29     126 .. 0.77
   2 ?   -2.2   0.0      0.42   1.3e+03      53      80 ..     274     301 ..     264     312 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.7e-05
                 GGHHHHHHHHHH---EEEB--GGGHHHHHHHHHHHHHHTTS-SEEEEE CS
      SpoVAD  84 qlisssfaarelkiPflglygaCstsaeslalaallvdggfakrvlaa 131
                 q +  +f+    kiP++ +   Cst + +la+a  l+ +g a+ ++++
  CCE26921.1  66 QRVFYQFG--MTKIPLYNVNNNCSTGSTGLAMARNLIASGAANCIMVV 111
                 44444444..4689****************************998765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHHHTT--GGG-SEEEEEE CS
      SpoVAD  53 klleeavkkalkkanlkkedidfllaGD 80 
                 ++ + av+ a+ +a+++  d++++   D
  CCE26921.1 274 EMTQFAVRAAMAEAHISPADVQVVELHD 301
                 6888999999999999999999876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3454.89
//
Query:       CCE26922.1  [L=858]
Description: uncharacterized protein CPUR_00391 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-12   45.0   0.3    6.8e-12   45.0   0.3    2.0  1  Fungal_trans    Fungal specific transcription factor domain
    2.2e-06   27.7  14.3    3.8e-06   26.9  14.3    1.3  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain
    0.00027   20.0   9.2    0.00039   19.5   9.2    1.3  1  DUF2722         Protein of unknown function (DUF2722)
  ------ inclusion threshold ------
      0.011   15.8  23.6      0.016   15.2  23.6    1.2  1  TFIIA           Transcription factor IIA, alpha/beta subunit
      0.045   13.4  23.1      0.075   12.6  23.1    1.3  1  Spt20           Spt20 family
       0.59   10.5   6.2          1    9.8   6.2    1.4  1  EPL1            Enhancer of polycomb-like
        1.2    9.6  16.8        3.2    8.2  16.8    1.7  1  DUF3682         Protein of unknown function (DUF3682)
        1.2   10.1   9.5        2.7    9.0   9.5    1.5  1  DUF4834         Domain of unknown function (DUF4834)
        1.4    7.8   9.8          2    7.3   9.8    1.1  1  eIF-3_zeta      Eukaryotic translation initiation factor 3 su
        1.6    8.6  12.1        3.5    7.5  12.1    1.6  1  Suf             Suppressor of forked protein (Suf)
        1.7    8.9  13.4        2.8    8.2  13.4    1.2  1  MMR1            Mitochondrial Myo2 receptor-related protein
          3    6.2  16.3        4.6    5.6  16.3    1.1  1  UPF0560         Uncharacterised protein family UPF0560
        3.4    5.8  21.6        4.7    5.3  21.6    1.1  1  PAT1            Topoisomerase II-associated protein PAT1
        8.1    5.1  10.5         12    4.5  10.5    1.2  1  Presenilin      Presenilin


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.3   5.3e-15   6.8e-12       3     200 ..     340     533 ..     338     578 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 5.3e-15
  Fungal_trans   3 rffsnfhpqfpilhkpsflpkt.ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeili.....hedfsspssslwi 93 
                   ++f+ + + + ilh  +f++ +  ++  +     +   ll++l+++++f  +  +     ++  +++ ++ p + + ++     + + +  ++ + +
    CCE26922.1 340 MYFDTSESIYRILHARTFYDAYnMYWDGNLQSDWFLPQLLCVLSVASRFETKSRGMG---HE--RSDGVHIPTACALIQswldsL-KGKQLVD-IST 429
                   8*********************77777777777777777999999999888888776...22..236777777665555665432.3444444.666 PP

  Fungal_trans  94 lq.sLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcdd 189
                   +q + ll+    + + +    ++ +g ++rla s+g+hr+p+ ++    ++ +++  e+rrRlw++   +D + ++ ++ p+ll+d + ++  P + 
    CCE26922.1 430 VQvQILLIHASRMITPRLQDSWNKLGYVLRLAMSMGMHRDPAESE----PRIPVFWGEMRRRLWFTMADMDLHMSIACNMPSLLRDGDFTCKPPRNL 522
                   666555555555566678999************************....579999999*************************************** PP

  Fungal_trans 190 ddlwesddase 200
                   +d ++ +++se
    CCE26922.1 523 NDSEIYLNMSE 533
                   **999999876 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9  14.3     3e-09   3.8e-06       1      33 [.     116     146 ..     116     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3e-09
                 SS-HHHHHCT---STSSSS-HHHHHCTHHHCCC CS
     Zn_clus   1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfy 33 
                 ++C++Crk+K KCd++   Cs+C+k+n  C+ y
  CCE26922.1 116 KSCTECRKRKLKCDRQLS-CSQCQKSNRVCR-Y 146
                 59****************.***********9.5 PP

>> DUF2722  Protein of unknown function (DUF2722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   9.2   3.1e-07   0.00039      18      47 ..      72     135 ..      12     205 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.1e-07
     DUF2722  18 qvskqqqkkesskqgsqqeqksqqqqqsq...................................t 47 
                 q+++qqq+++++ q++qq+q++qqq  +q                                    
  CCE26922.1  72 QQQQQQQQQQQQ-QQQQQQQQQQQQHHHQhslqmqqrsvkrprpvksctecrkrklkcdrqlscS 135
                 222222222222.1222222222222222454455555555555555555555555555555550 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2  23.6   1.2e-05     0.016     155     246 ..      21     117 ..       3     207 .. 0.38

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
       TFIIA 155 aaqplqqvvqq..............sqgsaaqssvaalqaq..sqqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqeesqqaqqa.sqeqvags 236
                 a++ ++ + ++              +  +  q++v+ ++++  s+q  +l+++qqq       qqqqqqqqqqqq+qqqqq++++q++ + +q++v+  
  CCE26922.1  21 ASASINANKSStgsvassfennaahVRTPPPQHVVHVSSPHgmSRQPLGLSQQQQQ-------QQQQQQQQQQQQQQQQQQQHHHQHSLQmQQRSVKR- 111
                 33333333221222222100000011222222222222222112222222222222.......11111111111111111111111111112222221. PP

       TFIIA 237 qvessqtdga 246
                     +   ++
  CCE26922.1 112 ----PRPVKS 117
                 ....111111 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  23.1   5.9e-05     0.075     111     154 ..      67     113 ..      34     126 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.9e-05
       Spt20 111 q...qnqqqqqqqqqqqqqqqqqqeqqqqqnekdsttteekekksks 154
                 +   ++qqqqqqqqqqqqqqqqqq+qqqq   + s + ++++ k + 
  CCE26922.1  67 PlglSQQQQQQQQQQQQQQQQQQQQQQQQHHHQHSLQMQQRSVKRPR 113
                 25664555555555555555555555555555555555555555444 PP

>> EPL1  Enhancer of polycomb-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.2   0.00078         1      33      71 ..      72     112 ..      24     188 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00078
        EPL1  33 eknsnkensqqavetgvdkkeenekh.q.viaaakkkesss 71 
                 +++++++++qq++++++++++++++h q  ++ ++++ ++ 
  CCE26922.1  72 QQQQQQQQQQQQQQQQQQQQQQQQHHhQhSLQMQQRSVKRP 112
                 22222222223333333333344444455555555544443 PP

>> DUF3682  Protein of unknown function (DUF3682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  16.8    0.0025       3.2      36     121 ..      13      98 ..       2     102 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0025
     DUF3682  36 dssagssdGeAgssgsnssnttGdsstgdqtpa..aaaan.nssppegpagttsgtghtrq....eeeEeeeenekqqqsdEaQvqqhqqheh 121
                 d++a  +   A  +          sstg  +++    aa+  ++pp+ +    s  g  rq     ++ +++++++qqq +  Q qq+qqh h
  CCE26922.1  13 DAAAAAAAASASINA-------NKSSTGSVASSfeNNAAHvRTPPPQHVVHVSSPHGMSRQplglSQQQQQQQQQQQQQQQQQQQQQQQQHHH 98 
                 444444433333333.......344444433321122344267899999999999***99933332333344566666666677777777777 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   9.5    0.0021       2.7      28      73 ..      66     106 ..      53     120 .. 0.42

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0021
     DUF4834  28 tvfglgsrkkssksaqkqfgnstnsnqqksqsrsetkeegeiieee 73 
                 + +gl++++++++++q+q     +++qq++q++++++++++ + ++
  CCE26922.1  66 QPLGLSQQQQQQQQQQQQ-----QQQQQQQQQQQQHHHQHSLQMQQ 106
                 444555444433222222.....22222222222222222222222 PP

>> eIF-3_zeta  Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.8    0.0016         2     107     148 ..      72     112 ..      14     150 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0016
                 XXXXXXXXXX...........................XXXXX CS
  eIF-3_zeta 107 rqqqqalnkkqgeeekeerskkkkkkkkgrrkgwkdkkdkeq 148
                 +qqqq+ +++q++++++++++++++++++++ ++++++ k+ 
  CCE26922.1  72 QQQQQQ-QQQQQQQQQQQQQQQQQQHHHQHSLQMQQRSVKRP 112
                 111111.11111111111111111111111112222222222 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  12.1    0.0027       3.5     206     257 ..      43      96 ..      10     173 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0027
         Suf 206 dss..vkkPdklqmvespk....kgaagrrleqqrksessksaeaasksqkalqqqpa 257
                 + +  +++P+ +  v+sp+    +    +    q+++++++++++++++q+++qqq+ 
  CCE26922.1  43 AAHvrTPPPQHVVHVSSPHgmsrQ----PLGLSQQQQQQQQQQQQQQQQQQQQQQQQH 96 
                 222224466666666666643331....222222222222222222222222222211 PP

>> MMR1  Mitochondrial Myo2 receptor-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  13.4    0.0022       2.8      70     185 ..      29     160 ..       5     195 .. 0.39

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0022
        MMR1  70 kaseqeatgskqnnek.elnvekskiskltiketleql.....re.eksqqksksaekekqkrsvaakseqesekveelekskser...........ei 150
                 k+s  ++ +s +nn + +  ++++++++++    ++       ++ +++qq+++++++++q+++++++++q+   + ++ + k  r           ++
  CCE26922.1  29 KSSTGSVASSFENNAAhVRTPPPQHVVHVSSPHGMSRQplglsQQqQQQQQQQQQQQQQQQQQQQQQHHHQH-SLQMQQRSVKRPRpvksctecrkrKL 126
                 333334444444444432222222223332222222221221111122222222222222333333333333.22222223333332222222222222 PP

        MMR1 151 setssaiSestlleledletteaetlnpnnsveek 185
                 +  +  +S s+   ++ + ++ a+ +++n s+   
  CCE26922.1 127 K-CDRQLSCSQCQKSNRVCRYAADHDPANLSDASD 160
                 2.222233333333333334445555555444444 PP

>> UPF0560  Uncharacterised protein family UPF0560
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  16.3    0.0036       4.6     525     583 ..      51     108 ..      46     139 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0036
     UPF0560 525 PaHYmrLpgehplseqalllqaeqqsdlekiqaelsaslqkqeqeqqqqqqqlaqqalg 583
                 P H +++++ h +s q+l l+++qq+++++ q++ ++ +q+q+q++++q++ ++qq  +
  CCE26922.1  51 PQHVVHVSSPHGMSRQPLGLSQQQQQQQQQQQQQQQQQQQQQQQQHHHQHSLQMQQR-S 108
                 89****************999999888888666666655545444444443344433.3 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  21.6    0.0037       4.7     223     321 ..      49     143 ..      10     192 .. 0.45

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0037
        PAT1 223 qqPaaeqaeqaeaaaqaaka.......eqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqskqakpaepsasseaqeakqqappakvqptqi 314
                   P++  + ++ +               ++qq+++++++qqq+q+q++q+qq++++++++++ qr+ +++   +      ++ ++++ + + + + +q 
  CCE26922.1  49 PPPQHVVHVSSPH------GmsrqplgLSQQQQQQQQQQQQQQQQQQQQQQQQHHHQHSLQMQQRSVKRPRPVKS----CTECRKRKLKCDRQLSCSQ- 136
                 2222222222221......12222334333333333444444444444445555566666666665444322222....2212222233323333333. PP

        PAT1 315 lqnpnrl 321
                  q+ nr 
  CCE26922.1 137 CQKSNRV 143
                 3555544 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  10.5    0.0097        12     270     306 ..      48     106 ..       9     168 .. 0.50

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0097
  Presenilin 270 e......................seeeseeesseaessaeesseekeseessesseeee 306
                 +                      s+++++++++++++++++++++++++++++s + ++
  CCE26922.1  48 TpppqhvvhvssphgmsrqplglSQQQQQQQQQQQQQQQQQQQQQQQQHHHQHSLQMQQ 106
                 23333344443444444444444222222222211111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3979  (0.221931); expected 358.6 (0.02)
Passed bias filter:                     1476  (0.0823247); expected 358.6 (0.02)
Passed Vit filter:                       318  (0.0177366); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.35u 0.37s 00:00:01.72 Elapsed: 00:00:00.51
# Mc/sec: 5013.12
//
Query:       CCE26923.1  [L=745]
Description: uncharacterized protein CPUR_00392 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-63  213.7   0.1    5.3e-63  213.2   0.1    1.2  1  Tcf25            Transcriptional repressor TCF25
  ------ inclusion threshold ------
      0.027   15.0   1.2       0.59   10.7   0.0    3.5  3  TPR_19           Tetratricopeptide repeat
      0.069   12.9   8.2       0.17   11.6   8.2    1.6  1  DUF1387          Protein of unknown function (DUF1387)


Domain annotation for each model (and alignments):
>> Tcf25  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.2   0.1   8.9e-67   5.3e-63       1     350 []     253     573 ..     253     573 .. 0.89

  Alignments for each domain:
  == domain 1  score: 213.2 bits;  conditional E-value: 8.9e-67
       Tcf25   1 FkfekskeykeaqnlFlqlvdshDpealinllkkyPYHvdtLLqlsevyresedlevAndlieraLfalerafhisFhenllnltsgeirldyelveNR 99 
                 +++ +++ey ++q +F ++v+  Dp ++i+llk  PYHv tLLq+s v+++ ++++ +++l+eraLf++ r+  + F +     +sg +rld+++ eNR
  CCE26923.1 253 YAYVHETEYDSMQAFFFACVQIGDPMRMIHLLKGAPYHVSTLLQVSSVAKQDQNMALSAELLERALFTFGRVATSAFRQ---DIESGRARLDFRRPENR 348
                 6789*************************************************************************44...7889************* PP

       Tcf25 100 alflalfrhilslerrgctrTaleiaKlllsldpaeDplgillfiDflalksneyefLiklseefeiqrvqsvllfelselpnfaf...slaLalylke 195
                 +++la ++++ sl r+g++rTale+aKll++ld   Dp++i+  i  lal++ +  +Li++++e+++   +++  +     p+  +   sl+La++   
  CCE26923.1 349 QFWLAGYQYLRSLIRKGTYRTALEWAKLLFALDRS-DPYAIRHYIHVLALRAYQSTWLIDFFQEMDQLG-NCHGDV--DRYPGDQYlrqSLVLAKL--- 440
                 ********************************987.****************************88777.555444..445775554449999999... PP

       Tcf25 196 nkkklslsekakeaLqrAllrfPsvlqlLleklnvkttvkvtseslfkdssessfseeeelellqklYlersnilwkeeevitwLesevaelhellkdk 294
                    +++++e a+e+L++ ++  P+    L+++ln++++ ++             + +++  +  +k+Y+ ++++lw++++ it L++++++ ++  + +
  CCE26923.1 441 ---QANNTEGARELLKSGIQSLPWLYCALFQELNLDAPPSIW-----G-----IKPATDTASFWVKMYIDQTKDLWNNPQAITLLQQVAKSQETKPEVS 526
                 ...999********************************9996.....2.....233566789999**********************994433333332 PP

       Tcf25 295 kryseekpaakeahskldiniyrhvivselkslnallPdeimeknrsvlefDplpP 350
                 + +        ++ +++d+  +r + +++ ++l a+ P+++   +++ +efDplpP
  CCE26923.1 527 SLA--------SEDDAVDLGSARLAYLEGQTTLLAITPRHLLD-SQPNYEFDPLPP 573
                 222........234569************************96.9**********9 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.95   5.7e+03       2      33 ..     362     393 ..     361     397 .. 0.78
   2 ?   10.7   0.0    0.0001      0.59      19      51 ..     423     455 ..     406     460 .. 0.86
   3 ?    0.3   0.1      0.17     1e+03      43      64 ..     507     528 ..     504     549 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.95
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAe 33 
                 +  g y  Al+  + +++ d  +++a   ++ 
  CCE26923.1 362 IRKGTYRTALEWAKLLFALDRSDPYAIRHYIH 393
                 66789999999999888888888888877665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0001
      TPR_19  19 qedpknaearllLAeallalgqldeAealLdal 51 
                 + +p+++++r  L+ a l++++++ A++lL+  
  CCE26923.1 423 DRYPGDQYLRQSLVLAKLQANNTEGARELLKSG 455
                 569***************************976 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.17
      TPR_19  43 eAealLdalpeedpddaryasL 64 
                 +A+ lL+++ +++   ++++sL
  CCE26923.1 507 QAITLLQQVAKSQETKPEVSSL 528
                 7888888888888877887776 PP

>> DUF1387  Protein of unknown function (DUF1387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   8.2   2.8e-05      0.17       7      89 ..      86     172 ..      82     210 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.8e-05
     DUF1387   7 kknkkkKkkkkkqkeankeakdkektaekeseee....eglnglhvngsakdtesvdslsekldtasldakeleseesasaeteeke 89 
                 kk kkkKkkk+k++++ ++a+d+e++ +++ +e     ++  g h  g+  +  s+++ ++  +++s+d ++l + ++ ++   ++ 
  CCE26923.1  86 KKSKKKKKKKSKKAKSATAAADEEDEIDRAIKELqsksKSGAGSHSHGQSGQDGSFGPRKRMNELLSIDTHHLRAINEMRSLFGREV 172
                 44455555555555555555555554444333322235677899******888999**9***********99988766655443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1747  (0.0974399); expected 358.6 (0.02)
Passed bias filter:                      779  (0.0434492); expected 358.6 (0.02)
Passed Vit filter:                       129  (0.00719505); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.50
# Mc/sec: 4496.82
//
Query:       CCE26924.1  [L=532]
Description: related to SCD6-suppressor of clathrin deficiency [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-32  109.2   0.0    1.2e-31  108.6   0.0    1.3  1  LSM14     Scd6-like Sm domain
    1.2e-19   71.2   3.0    1.2e-19   71.2   3.0    2.0  2  FDF       FDF domain
    5.8e-06   26.4   0.0    1.5e-05   25.0   0.0    1.7  2  SM-ATX    Ataxin 2 SM domain


Domain annotation for each model (and alignments):
>> LSM14  Scd6-like Sm domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.0   2.1e-35   1.2e-31       1      74 [.       3      78 ..       3      79 .. 0.94

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 2.1e-35
       LSM14  1 efIGskislisksdirYeGilceinledstiaLqnvrsfGteg.rkdneq.ippskevyeyivFrgsDikdLevle 74
                ef+Gs+islisksdirY+G+l+ein+++st++L+nvrsfGteg r+++++ i ps++vyeyivFrgsD+kdL+++e
  CCE26924.1  3 EFLGSRISLISKSDIRYVGTLHEINSDESTVSLENVRSFGTEGrRGRPAEeIAPSDQVYEYIVFRGSDVKDLRIEE 78
                699****************************************55566668**********************987 PP

>> FDF  FDF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.7       1.7   9.9e+03      29      62 ..     227     260 ..     221     288 .. 0.54
   2 !   71.2   3.0   1.9e-23   1.2e-19       2     103 ..     392     488 ..     391     489 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.7
                 -XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXBX CS
         FDF  29 aklkeeklaknenaatatatneqpgekvegvdkk 62 
                 ++ k++++a  e +  a+a  +  ++++ ++d+k
  CCE26924.1 227 EQPKAPASAPTEAKPPAQAVRQPTNAPKPPLDTK 260
                 4455555554444555555555555555555544 PP

  == domain 2  score: 71.2 bits;  conditional E-value: 1.9e-23
                 SSSS---HCCCCCTSSCCHHCCHHHCC-XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXBXXBXXXXXXXEEEXTTXXEEEXXXHHHHHHHHHHH..HH CS
         FDF   2 kfeeDFDFesanakFnkkevfeellkkaklkeeklaknenaatatatneqpgekvegvdkkksffDkiSsegnergaqeheseedddwreerklnt.et 99 
                 ++++DFDF+++nakFnk+++ +e++++ +  e   +       ++++  + ++++++++k+ sffD+iSse+++r  ++++++++++wr+e+++++ et
  CCE26924.1 392 VPDSDFDFARSNAKFNKEDIAKEAIASGDTIESPGE------PENNEPIAETASGNPYNKSRSFFDNISSEAKDRAVKNGQRPGGREWRGEEQRRNmET 484
                 589***********************9999996655......45666667788899************************************99999** PP

                 TTXX CS
         FDF 100 fGvs 103
                 fG++
  CCE26924.1 485 FGQG 488
                 **97 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.6e-09   1.5e-05      10      80 ..       3      76 ..       1      77 [. 0.90
   2 ?   -2.7   0.0       1.2     7e+03      38      60 ..     336     357 ..     331     369 .. 0.61

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.6e-09
                TTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS...............-EEEEEEE-GGGEEEEXX CS
      SM-ATX 10 slvGkevevtvknGevyeGifstvslekdfsvvLkmarkvkk....anskssspssgeipdtliikakdivdiea 80
                 + G+++++  k++ +y G ++ +++ +++ v+L+++r   +     +  ++   s+++++ ++++++d+ d+ +
  CCE26924.1  3 EFLGSRISLISKSDIRYVGTLHEINS-DESTVSLENVRSFGTegrrGRPAEEIAPSDQVYEYIVFRGSDVKDLRI 76
                689***********************.8**************8764444999******************99875 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
                 T--EEEEEEEETTS......... CS
      SM-ATX  38 dfsvvLkmarkvkkansksssps 60 
                    v++ ma++ k+ +++  ++ 
  CCE26924.1 336 RAAVAIAMAQLGKS-GGNAMDNL 357
                 66789999999998.33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3637.94
//
Query:       CCE26925.1  [L=227]
Description: related to VTI1-v-SNARE: involved in Golgi retrograde protein traffic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-20   71.5   4.5    5.8e-20   71.5   4.5    1.8  2  V-SNARE        Vesicle transport v-SNARE protein N-terminus
    3.1e-17   62.6   3.0    3.1e-17   62.6   3.0    2.3  3  V-SNARE_C      Snare region anchored in the vesicle membrane 
  ------ inclusion threshold ------
      0.018   13.3   0.3      0.018   13.3   0.3    1.9  2  Fusion_gly     Fusion glycoprotein F0
      0.029   14.7   1.1      0.051   13.9   0.5    1.8  2  FAM219A        Protein family FAM219A
      0.035   14.0   0.6      0.035   14.0   0.6    2.0  2  Sec20          Sec20
      0.063   13.0   7.8       0.17   11.6   1.6    2.7  2  Use1           Membrane fusion protein Use1
       0.46   10.5   7.3        2.3    8.2   7.3    2.0  1  DUF1640        Protein of unknown function (DUF1640)
       0.82    9.0   2.8       0.34   10.2   0.4    1.5  2  FAM76          FAM76 protein
        3.9    7.3   6.8       0.23   11.3   0.5    2.1  3  Synaptobrevin  Synaptobrevin
        6.2    6.9   7.4       0.36   10.9   0.7    2.3  3  SNARE          SNARE domain


Domain annotation for each model (and alignments):
>> V-SNARE  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   4.5   3.2e-23   5.8e-20       2      77 ..      22      97 ..      21      98 .. 0.95
   2 ?   -2.3   0.1       3.4   6.2e+03       9      23 ..     128     143 ..     122     155 .. 0.46

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 3.2e-23
     V-SNARE  2 kellaeiksklarlsslageerkaalreiekkldeaeelldqMelEvrnlpsserasykaklreykselkklkkel 77
                k ++a++++kl+++++ +ge+rk+a+ ++e++l+ea+elld+M lE +n+p+s ra++++++r+y ++++  +++l
  CCE26925.1 22 KLVQADLTQKLDQIPEMSGESRKSAVVQAERALEEADELLDSMRLEKQNIPTSSRAKVNQRFRNYEADVDAQRRKL 97
                6789****************************************************************99877765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.4
     V-SNARE   9 ksklarlsslag.eer 23 
                 ++ l++ + l++  +r
  CCE26925.1 128 QQLLSGTDRLDRsTQR 143
                 3333333333332233 PP

>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.3   7.7e+03       7      18 ..      51      62 ..      46      66 .. 0.47
   2 ?   -3.8   0.4       9.3   1.7e+04      33      39 ..     125     131 ..     125     133 .. 0.82
   3 !   62.6   3.0   1.8e-20   3.1e-17       1      66 []     135     200 ..     135     200 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.3
   V-SNARE_C  7 sdrlknShrivd 18
                 + l++++ ++d
  CCE26925.1 51 ERALEEADELLD 62
                444444444443 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 9.3
   V-SNARE_C  33 sQretLk 39 
                 +Qr++L 
  CCE26925.1 125 EQRQQLL 131
                 6999997 PP

  == domain 3  score: 62.6 bits;  conditional E-value: 1.8e-20
   V-SNARE_C   1 erllresdrlknShrivdetisiGaailedLhsQretLkrarsklhnvanrlgksnsiLrsikrRv 66 
                 +rl r+++rlk S+ ++ et++iGa++l dL  Qr+++++++++l+n   ++++s ++Lr + rR+
  CCE26925.1 135 DRLDRSTQRLKASQALAHETEAIGASTLADLNVQRSRIQHTHNTLLNSEGYVDRSVKTLRGMARRM 200
                 799**************************************************************7 PP

>> Fusion_gly  Fusion glycoprotein F0
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.15   2.6e+02     443     467 ..      45      69 ..      18      75 .. 0.79
   2 ?   13.3   0.3     1e-05     0.018     437     483 ..     171     221 ..     130     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHCCCCTCCCHHHH CS
  Fusion_gly 443 esleqskdlleesnkiLdsvnkkll 467
                 + + q+   lee++++Lds+  +++
  CCE26925.1  45 SAVVQAERALEEADELLDSMRLEKQ 69 
                 5677899999999999999976655 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1e-05
                 HHHHHHHHHHHHHHHHHHHCCCCTCCCHHHHH....TTXXXXXXXXXXXXX CS
  Fusion_gly 437 elskvnesleqskdlleesnkiLdsvnkklls....taivivlivlvivvl 483
                  +++ ++ l +s  ++++s k L+++ + +++    t ++i+++vl+i+++
  CCE26925.1 171 RIQHTHNTLLNSEGYVDRSVKTLRGMARRMATnriiTISIITVLVLLIIAV 221
                 57788899****************996554430000444555555555555 PP

>> FAM219A  Protein family FAM219A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.3   5.9e+03      61      83 ..       9      32 ..       5      38 .. 0.59
   2 ?   13.9   0.5   2.8e-05     0.051      22      91 ..      69     138 ..      42     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.3
     FAM219A 61 lesryssGyssa.eqvnqdlsrql 83
                  s+  s y +  + v+ dl+++l
  CCE26925.1  9 AGSELFSSYEAElKLVQADLTQKL 32
                455555555555466777777766 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.8e-05
     FAM219A  22 esqPkktrkrsvkfnkgyaalsqepdeklvsldsdsdeelesryssGyssaeqvnqdlsrqllkdGyrld 91 
                 ++ P+++r ++ + ++ y a   +   kl  l sd+ + + +ry++  + ++ v+ + ++qll    rld
  CCE26925.1  69 QNIPTSSRAKVNQRFRNYEADVDAQRRKLAGLASDRAALFGTRYTDEPAGSSDVHLEQRQQLLSGTDRLD 138
                 566999999999999****999999999*******************999999**********9999998 PP

>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.4   2.5e+03      35      40 ..      51      56 ..      25      79 .. 0.53
   2 ?   14.0   0.6     2e-05     0.035       7      88 ..     141     222 ..     125     225 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.4
       Sec20 35 tkslek 40
                 + le+
  CCE26925.1 51 ERALEE 56
                222222 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2e-05
       Sec20   7 TeslraisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflalglflacvvyvv 88 
                 T+ l+a+++l  ++    + +l +l+ +   ++++++ + + e+ + rs k ++ + rr  t++++ ++ +  +++ ++ v+
  CCE26925.1 141 TQRLKASQALAHETEAIGASTLADLNVQRSRIQHTHNTLLNSEGYVDRSVKTLRGMARRMATNRIITISIITVLVLLIIAVI 222
                 67777777666666677899********************************************986655555544444333 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   3.6      0.14   2.5e+02      10      74 ..      32     103 ..      24     160 .. 0.60
   2 ?   11.6   1.6   9.7e-05      0.17     182     237 ..     168     223 ..     117     226 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.14
        Use1  10 LarceelakeersenewrLekyvkaleemleeLkkessk.......pskevlkeYsekveaLkllleaekls 74 
                 L++ +e+  e+r+   +  e+++++ +e+l+ +  e+++       + +++ ++Y+ +v+a +++l+   ++
  CCE26925.1  32 LDQIPEMSGESRKSAVVQAERALEEADELLDSMRLEKQNiptssraKVNQRFRNYEADVDAQRRKLAGLASD 103
                 677777777777777888888888888888888777777666665555666667777777766666544444 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 9.7e-05
        Use1 182 asqiikkDtetlsksekaadqnlaslkkeserleehskskvkcllwlllfvvlvvF 237
                   + i+ + +tl +se  +d++++ l   + r+   +  +++ +++l+l ++ v+F
  CCE26925.1 168 QRSRIQHTHNTLLNSEGYVDRSVKTLRGMARRMATNRIITISIITVLVLLIIAVIF 223
                 5679*******************************999999999999999999999 PP

>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.3    0.0013       2.3      73     168 ..     126     222 ..      18     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0013
     DUF1640  73 efaalrseteklqreleklk..qkLreeidklkadirldlnleKgrireelakleakiqelnnkidrevsalrteiEsvKldvikyliglvvgilavg 168
                 + ++l s t++l r  ++lk  q L +e++ + a++  dln +++ri+  ++ l +  +    +  + +  +   +   ++ +i  +  lv+ i+av+
  CCE26925.1 126 QRQQLLSGTDRLDRSTQRLKasQALAHETEAIGASTLADLNVQRSRIQHTHNTLLN-SEGYVDRSVKTLRGMARRMATNRIITISIITVLVLLIIAVI 222
                 556788899999999999975588************************97776655.77788888888999999999999999988888888888876 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.4   0.00019      0.34     229     295 ..      41     107 ..       7     111 .. 0.83
   2 ?   -1.9   0.1      0.94   1.7e+03     191     191 ..     157     157 ..     118     209 .. 0.46

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00019
       FAM76 229 aslkkqleqkdqellekdkkitelkaellekekelreklkelekeakekieklekkirellkevael 295
                 +s+k  + q + +l e d  + +++ e+++  ++ r k++++ +++++ +++ ++k + l  + a+l
  CCE26925.1  41 ESRKSAVVQAERALEEADELLDSMRLEKQNIPTSSRAKVNQRFRNYEADVDAQRRKLAGLASDRAAL 107
                 47788899999*************************************************9999987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.94
       FAM76 191 l 191
                 +
  CCE26925.1 157 I 157
                 1 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       3.6   6.4e+03      31      47 ..      30      46 ..      27      57 .. 0.71
   2 ?   -2.0   0.2       1.8   3.2e+03      34      44 ..     135     145 ..     124     156 .. 0.54
   3 ?   11.3   0.5   0.00013      0.23      40      88 ..     175     223 ..     170     224 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.6
                   CCHHHHCCCCHHHHHHH CS
  Synaptobrevin 31 ekldeLvdktenLqssa 47
                   +kld++ +++ + ++sa
     CCE26925.1 30 QKLDQIPEMSGESRKSA 46
                   67777777777766665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.8
                    HHHCCCCHHHH CS
  Synaptobrevin  34 deLvdktenLq 44 
                    d L+  t++L+
     CCE26925.1 135 DRLDRSTQRLK 145
                    23333333333 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00013
                    CHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin  40 tenLqssaqqFkkqarklkrkmwwknmkliiililvvlililiiiivic 88 
                    t n   +++ +  ++ k  r m  +    +ii i ++++l+l+ii+vi+
     CCE26925.1 175 THNTLLNSEGYVDRSVKTLRGMARRMATNRIITISIITVLVLLIIAVIF 223
                    5666678999999999999999988888888888888888888888775 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       3.3     6e+03      10      24 ..      47      61 ..      45      65 .. 0.63
   2 ?   -1.4   0.1       1.4   2.4e+03      16      38 ..     123     145 ..     118     148 .. 0.61
   3 ?   10.9   0.7    0.0002      0.36      12      53 .]     181     222 ..     177     222 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.3
                HHHHHHHHHHHHHHH CS
       SNARE 10 VenaqsnveraqkeL 24
                V +a+ ++e+a + L
  CCE26925.1 47 VVQAERALEEADELL 61
                566777777776555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHCTXXXXX CS
       SNARE  16 nveraqkeLkkavkyqksnRklk 38 
                 ++e+ q+ L    +  +s+++lk
  CCE26925.1 123 HLEQRQQLLSGTDRLDRSTQRLK 145
                 55555666666666666666655 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE  12 naqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                 n++ +v+r  k L+ +++++  nR  ++ i+ +lv+++++v+
  CCE26925.1 181 NSEGYVDRSVKTLRGMARRMATNRIITISIITVLVLLIIAVI 222
                 78899*********************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1246  (0.0694963); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1589.58
//
Query:       CCE26926.1  [L=542]
Description: uncharacterized protein CPUR_00395 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-18   66.6   0.1    1.9e-15   57.1   0.0    2.3  2  Amino_oxidase  Flavin containing amine oxidoreductase
    3.8e-09   36.6   0.1    8.5e-09   35.5   0.1    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00017   21.6   0.0       0.15   12.0   0.0    2.7  3  NAD_binding_9  FAD-NAD(P)-binding
    0.00046   19.5   0.0      0.015   14.5   0.0    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0015   18.2   0.0       0.02   14.5   0.0    2.2  2  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.019   13.7   0.0       0.99    8.0   0.0    2.1  2  HI0933_like    HI0933-like protein
       0.05   12.9   0.0      0.083   12.2   0.0    1.3  1  FAD_oxidored   FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   7.3e-19   1.9e-15       2     264 ..      21     320 ..      20     332 .. 0.77
   2 !    7.1   0.1    0.0011       2.9     398     449 ..     423     472 ..     413     474 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 7.3e-19
                    HHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEET....TEEEESS--EEET.TTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECCTTEECH CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGRirtvrsd....GylielGamwftg.agnpllellkelgledslslpdpgapkrvlskggrefpgdlsp 92 
                    +G+aa + L +  +dV ++Ea dr+GG+ +tvr +    +  +++G+ +++  ++ ++ e   e  +++ ++ p  +       kg    ++++  
     CCE26926.1  21 SGIAAIWALNRTYHDVYLYEAADRLGGHTNTVRWNagkySTAVDTGFIVLNTaTYREFPETSPE-QIHELTRSPVLT-------KGSS--TANFIN 106
                    9***********************************8888************877777777777.555444433333.......2222..556666 PP

                    HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH...HHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTTTTCBH CS
  Amino_oxidase  93 vpaewealleqgalsaellsleeklrlgleall...qktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdpselsa 185
                    + ++++ ++e     +++++++ +  +gl + +    + + + +++ +sl  +++ + + ++ +  ++d l+++e ++ +     ++ +  ++++ 
     CCE26926.1 107 FLNKINVVAE-----RTEMTFGVSRDQGLFEWAgsnLASIFCQKRNIFSLRMWRMIFDIIRFNQ-FALDLLVNEEDEQPIKETDSVLQAAARAETI 196
                    6666666666.....6666666666666666666666666677777777777777777777777.7777777777777777777777777777777 PP

                    HHHTCCCCHHHHHTSCCCEE............................................TTHTHHHHHHHHHTTTTEEEETSEEEEEEEEE CS
  Amino_oxidase 186 klalpllwelegfggslllp............................................rgGlsqlpealaeelrgldirlntrVkeikre 237
                    +  l  +     f+++ llp                                            r+G ++ ++a+ +  +++ + l t+V++++ +
     CCE26926.1 197 GEYLSREGYSDAFRDDYLLPmaaavwstspdkcglefpvltlvrflwnhhllstiaarpdwltlRDGSQSYIDAVMKGFPPNHLFLKTPVTSLHND 292
                    766666666666666666667777777777777777777777777777777778888888888********************************6 PP

                    TTC.EEEEETTSTEEEESEEEE-S-HHH CS
  Amino_oxidase 238 gdg.vtvtledgevveaDaVvvTvplgv 264
                    ++g v +++edg++ ++D+V++++  + 
     CCE26926.1 293 DSGrVVLQFEDGKSDTFDHVILATHGDE 320
                    6655*******************98765 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0011
                    EEE.BTTH...HHHHHHHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHH CS
  Amino_oxidase 398 ysyvsvgp...ghedydplakpegdprlffAGehtsreypgtvegAilSGlraAa 449
                    ys++ ++p     + + p+ ++    ++ +AG++t    +g  e+ ++SGl++A+
     CCE26926.1 423 YSHPLYTPeaiRAQKFLPHIQN--KRGISYAGAWTK---YGFHEDGFSSGLHVAQ 472
                    5555555555566677777777..99**********...699************8 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.1   3.3e-12   8.5e-09       1      58 [.      15      75 ..      15      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 3.3e-12
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE.TT...CEECTS---EEETTHH CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev.pg...vrvdygahifhgsgyy 58
                   IvG+G sG +a ++L +  +dv l+e++drlGG+  +++   g    +vd+g  ++++   y
     CCE26926.1 15 IVGSGCSGIAAIWALNRTYHDVYLYEAADRLGGHTNTVRWnAGkysTAVDTGFIVLNTAT-Y 75
                   9*************************************9952468999****99999954.4 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0028       7.3       1      34 [.      14      42 ..      14      61 .. 0.81
   2 ?   -3.5   0.0       3.5   9.1e+03      53      76 ..     112     137 ..     109     146 .. 0.66
   3 !   12.0   0.0   5.9e-05      0.15     104     153 ..     268     316 ..     258     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0028
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdps 34
                   aivG G++G+a++ +L +       +++ l++ +
     CCE26926.1 14 AIVGSGCSGIAAIWALNRTY-----HDVYLYEAA 42
                   8*************998885.....677777764 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.5
  NAD_binding_9  53 Nvpase..mslftddpptfaeWlrer 76 
                    Nv+a++  m++   +++ + eW+ ++
     CCE26926.1 112 NVVAERteMTFGVSRDQGLFEWAGSN 137
                    66665511444455559999999876 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 5.9e-05
  NAD_binding_9 104 feellarlpegvtvevhraevvdleeradgqavll.adgaslaadaVvLAl 153
                    ++++++ +p +    ++++ v++l+++++g+ vl+ +dg+s ++d+V+LA+
     CCE26926.1 268 IDAVMKGFPPN--HLFLKTPVTSLHNDDSGRVVLQfEDGKSDTFDHVILAT 316
                    55566666543..357899***********9776669*************8 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     6e-06     0.015       1      31 [.      11      45 ..      11     121 .. 0.82
   2 ?    2.9   0.0     0.021        53      70     107 ..     281     316 ..     240     346 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6e-06
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEEE....T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlve....l 31
                 k+v+++G+G  G+aa   l++  ++v+l+e    l
   CCE26926.1 11 KKVAIVGSGCSGIAAIWALNRTYHDVYLYEaadrL 45
                 589**************************855442 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.021
                  CHCCTCEEEEESC.EEEEETEEECTCEEEEEESEEEE-- CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  70 llgeevvkidpgk.kkvklekkkegdeekiaydklvlAt 107
                  +l+++v+++ ++  ++v+l+    +d+++ ++d+++lAt
   CCE26926.1 281 FLKTPVTSLHNDDsGRVVLQF---EDGKSDTFDHVILAT 316
                  456689999987778999933...667899********9 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     8e-06      0.02       1      36 [.      12      49 ..      12      89 .. 0.86
   2 ?    1.2   0.0     0.088   2.3e+02     163     200 ..     280     316 ..     267     343 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8e-06
                EEEEECTSHHHHHHHHHHHHT.T.EEEEESSSSTTSSG CS
         DAO  1 dvviiGGGiiGlstAyeLarr.g.Vtllekgdiagsga 36
                +v+i+G+G  G+++ ++L r  + V l+e++d++g ++
  CCE26926.1 12 KVAIVGSGCSGIAAIWALNRTyHdVYLYEAADRLGGHT 49
                59****************654448*********99544 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.088
                 EEESECEEEEEEEE.TCEEEEEEECTEEEEEEEEEEE-- CS
         DAO 163 ilegtevtgleeed.gkvwgverttpgendaadavVnaa 200
                 ++++t+vt+l ++d g+v  + + ++g  d++d+v++a+
  CCE26926.1 280 LFLKTPVTSLHNDDsGRV-VL-QFEDGKSDTFDHVILAT 316
                 68899****966553442.23.333365566799****9 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00039      0.99       2      36 ..      12      46 ..      11      50 .. 0.92
   2 ?    3.5   0.0    0.0091        23     126     174 ..     280     329 ..     263     342 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00039
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +v+++G G +G+ a  +++++ ++V l+e+a++lg
   CCE26926.1 12 KVAIVGSGCSGIAAIWALNRTYHDVYLYEAADRLG 46
                 79**********999999*************9988 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0091
                  EE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--.--SS-GGGT--S CS
  HI0933_like 126 lrletevksvekeedgkfrvktkseeeleadklvlAt.GGlSiPklGstg 174
                  l l+t v+s++++++g++ ++ +++++ + d+++lAt G +++  lG++ 
   CCE26926.1 280 LFLKTPVTSLHNDDSGRVVLQFEDGKSDTFDHVILAThGDEALSILGASA 329
                  567899****************99************94557788888876 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.2e-05     0.083       2      50 ..      13      59 ..      12     104 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.2e-05
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignk 50
                  v +vG+g +G+aA  a  r    v L e  ++lGG +    v +  g++
    CCE26926.1 13 VAIVGSGCSGIAAIWALNRTYHDVYLYEAADRLGGHTN--TVRWNAGKY 59
                  89*********************************863..334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3667.75
//
Query:       CCE26927.1  [L=337]
Description: uncharacterized protein CPUR_00396 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-20   71.5   0.0    1.3e-19   70.6   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    7.7e-11   42.6   0.0    2.5e-10   40.9   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
      3e-08   34.2   0.0    6.5e-08   33.1   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    7.9e-08   33.0   0.0    2.5e-06   28.2   0.0    2.9  2  Methyltransf_12  Methyltransferase domain
    9.4e-06   25.5   0.0      0.014   15.2   0.0    2.4  2  Methyltransf_31  Methyltransferase domain
      0.001   18.6   0.0     0.0033   17.0   0.0    1.8  2  MTS              Methyltransferase small domain
     0.0033   16.9   0.0     0.0048   16.3   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0044   17.2   0.0       0.83    9.7   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
     0.0053   16.1   0.0      0.079   12.2   0.0    2.3  2  Methyltransf_2   O-methyltransferase domain
      0.009   15.4   0.0       0.21   10.9   0.0    2.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.021   14.3   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.024   14.4   0.0      0.048   13.4   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
      0.047   13.4   0.0      0.082   12.6   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
       0.14   11.9   0.0       0.26   11.0   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0     1e-22   1.3e-19      14     160 ..      93     251 ..      72     254 .. 0.73

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 1e-22
  Methyltransf_23  14 erllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppell 102
                      ++l+p l++++  rvLd+G+G+Gi++ ++++++   s++g D+ p + e+++ + ++ ++d +   e++  + +fd+I+ r+ l+ ++d+++l+
       CCE26927.1  93 LFLAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSIIGTDIFPCQPEWVPpNVRFEIDDAT--LEWTWHASHFDFIHIRFILGGIQDWTALF 183
                      34444.4444456*******************87779*************9665555555555..56667899********************* PP

  Methyltransf_23 103 rqiatllkpgGylllseplasl.......kedrl.lldwlylvpagrhi...sffsarslkelleeaGl 160
                      ++++++++pgG++   e++++        + ++  l +++ l+ +g++i   +ff  +   +++ eaG+
       CCE26927.1 184 QNAYRCCAPGGWVQSVEVDVDFrsddgstE-LEPvLASYGDLFREGGKImnrHFFVQELQQQAFDEAGF 251
                      *****************9998866665532.33312233444444455555566664555555677777 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0     2e-13   2.5e-10       1      97 []     106     194 ..     106     194 .. 0.90

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 2e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+++g+Di + + e +        +nv+f+  da  ++  ++++fD++++++ l  +  +d+ +++++++r++
       CCE26927.1 106 VLDVGTGSGIWAIEFADQFPNASIIGTDIFPCQPEWVP-------PNVRFEIDDAtLEWTWHASHFDFIHIRFILGGI--QDWTALFQNAYRCC 190
                      9******************99**********9988654.......5779*99999778999**********8766665..59************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE26927.1 191 APGG 194
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   5.1e-11   6.5e-08       1      94 [.     107     196 ..     107     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 5.1e-11
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+++g+D+ + + +++  +       v+f   da+ +     + fD++ +++ l  ++d+ +++++++R++ pg
       CCE26927.1 107 LDVGTGSGIWAIEFADQFpnASIIGTDIFPCQPEWVPPN-------VRFEIDDATlEWTWHASHFDFIHIRFILGGIQDWTALFQNAYRCCAPG 193
                      8**************9999**************999333.......5566666663468999******************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE26927.1 194 GWV 196
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.9e-09   2.5e-06       1      99 []     107     196 ..     107     196 .. 0.81
   2 ?   -0.9   0.0       2.2   2.8e+03      65      93 ..     288     317 ..     267     319 .. 0.69

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.9e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+Di p + e               ++e+++  l+ +   s+fD +++ + l  ++d+ ++++n++++++
       CCE26927.1 107 LDVGTGSGIWAIEFADQFPNASIIGTDIFPCQPEWVPPNV---------RFEIDDATLEWTWHASHFDFIHIRFILGGIQDWTALFQNAYRCCA 191
                      8******************************993333333.........33333333333333379**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE26927.1 192 PGGWV 196
                      ***85 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.2
  Methyltransf_12  65 ssfDlvvasnvlhhl.kdirevldnirklL 93 
                      + +   v +nvl+   ++ + +l+n+r+++
       CCE26927.1 288 QGYTQMVWHNVLQRPaDEHHVWLANLRRAI 317
                      378888889999999555558888888876 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-05     0.014       5      36 ..     104     134 ..     100     137 .. 0.89
   2 !    8.0   0.0    0.0019       2.4      55     113 ..     145     202 ..     142     254 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDi 36 
                       rvlD+G+G+G  ++e+a   +p+a ++G Di
       CCE26927.1 104 HRVLDVGTGSGIWAIEFA-DQFPNASIIGTDI 134
                      68****************.669********98 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0019
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      nv+Fe+ d++      ++ + fD+i+ + +l  + d  + ++++ r   pgg + + +++
       CCE26927.1 145 NVRFEIDDATLeWT--WHASHFDFIHIRFILGGIQDWTALFQNAYRCCAPGGWVQSVEVD 202
                      9********99444..999********************************988777766 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.6e-06    0.0033      21      63 ..      92     134 ..      79     136 .. 0.92
   2 ?   -2.9   0.0       3.4   4.4e+03      77      96 ..     284     305 ..     274     323 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.6e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a++  +d+
  CCE26927.1  92 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASIIGTDI 134
                 799999****9999**********************9988875 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.4
                 HTTGC..EEEEE-STTTTSTTS CS
         MTS  77 ankle..vevvasdvleeveek 96 
                 +n+l+  +++v+++vl+  +++
  CCE26927.1 284 ENDLQgyTQMVWHNVLQRPADE 305
                 4555556788888888877754 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.7e-06    0.0048     162     194 ..     103     136 ..      90     196 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.7e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a ++  ++++++Di +
  CCE26927.1 103 IHRVLDVGTGSGIWAIEfADQFPNASIIGTDIFP 136
                 369*************7477899999***99855 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00065      0.83      21      71 ..     102     154 ..      74     165 .. 0.85
   2 ?    5.3   0.0     0.015        20      29      39 ..     189     199 ..     184     241 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00065
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CC CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdit 71 
                 + ++v+D+g + G w+   + ++ + + +++ D+ p++p    p+v++   d t
  CCE26927.1 102 KIHRVLDVGTGSGIWAIEFADQFPN-ASIIGTDIFPCQPEwvpPNVRFEIDDAT 154
                 6799***********9999999875.9**********99888899998777766 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.015
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw q +
  CCE26927.1 189 CCAPGGWVQSV 199
                 ********976 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.2e-05     0.079      17      94 ..      53     134 ..      32     140 .. 0.65
   2 ?    1.2   0.0      0.15     2e+02     146     192 ..     180     229 ..     165     251 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.2e-05
                     HHHHHS--HHHHHTS..SHHHHHHHHHHHHTTHHHHHHH..HHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE- CS
  Methyltransf_2  17 fkkafGislfeaikr..deeerakfnkglqessslvakk..vleafdleglkslvDvGGGtGalakaivsayPtikvivfDl 94 
                     + +++    f+  +   +++ ++k  ++ ++  ++  +    l+  +  ++++++DvG G+G  a + + ++P+ ++i  D+
      CCE26927.1  53 HGRTYHSDRFTTSYIlpNDDQQLKSEELCHHYLKILLDGqlFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASIIGTDI 134
                     333333335554443003344444455555555555444004555556789************************9998776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.15
                     HHHHHHHHHH--TT-EEEEEE----TTS-...--HHHHHHHHHHHHCSS- CS
  Methyltransf_2 146 vklLkrvkkalpagGkvivveavlgadps...geletelvdlimlvqteG 192
                     + l ++ ++ + +gG v  ve+ ++ + +   +ele  l +   l+ ++G
      CCE26927.1 180 TALFQNAYRCCAPGGWVQSVEVDVDFRSDdgsTELEPVLASYGDLFREGG 229
                     57999************999998775544000344444445555555555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00016      0.21      50     154 ..     105     201 ..      94     206 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
                      EEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE.--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHH CS
  Ubie_methyltran  50 kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflq.anaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrv 142
                      +vlDv +G+g +a++++d+   +  +++ Di +   +            n++f     + e   +   fD++ + f l  + D +  +++ayr 
       CCE26927.1 105 RVLDVGTGSGIWAIEFADQFP-NASIIGTDIFPCQPEWV--------PPNVRFEIdDATLEWTWHASHFDFIHIRFILGGIQDWTALFQNAYRC 189
                      678888888888888887764.45677777766433322........234555330334566777889************************** PP

                      EEEEEEEEEEEE CS
  Ubie_methyltran 143 lkpGGrlvvlef 154
                        pGG +  +e+
       CCE26927.1 190 CAPGGWVQSVEV 201
                      ******999986 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.7e-05     0.021       5      34 ..     106     135 ..     102     139 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES- CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEir 34 
                     vl++G+G+G + ++ A ++P+ +++G +i 
      CCE26927.1 106 VLDVGTGSGIWAIEFADQFPNASIIGTDIF 135
                     89************************9985 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.8e-05     0.048      24      56 ..     101     133 ..      93     142 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.8e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsd 56 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d
  CCE26927.1 101 DKIHRVLDVGTGSGIWAIEFADQFPNASIIGTD 133
                 44569*********************9999888 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.4e-05     0.082      30      89 ..      83     146 ..      76     167 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.4e-05
  Methyltransf_16  30 kylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkkni 89 
                      +yl+  l  +    + ++ +  +vl++G G+G+  + +a + p+a++i tD+     e +  n+
       CCE26927.1  83 HYLKILLDGQlflAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASIIGTDIFPcQPEWVPPNV 146
                      55555544446655556778889****************************8662345555555 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0002      0.26      69      97 ..      98     126 ..      89     136 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
                 TT--TT-EEEEES-TTSHHHHHHHHHHCT CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvge 97 
                 le +k  rvL+vG+GsG+ +  +a  + +
  CCE26927.1  98 LEKDKIHRVLDVGTGSGIWAIEFADQFPN 126
                 5667889***********99988876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2415.30
//
Query:       CCE26928.1  [L=590]
Description: related to asparaginase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-44  149.7   3.4    1.4e-28   99.9   0.0    2.2  2  Asparaginase_2  Asparaginase


Domain annotation for each model (and alignments):
>> Asparaginase_2  Asparaginase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0   7.6e-33   1.4e-28       1     159 [.      26     190 ..      26     219 .. 0.87
   2 !   48.6   2.6   3.2e-17   5.7e-13     170     248 ..     405     490 ..     356     536 .. 0.82

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 7.6e-33
                     -EEEEEEEEESE-G-HHHHHHHHHCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHCTCCCSSSTTSS-BTTS---EEEEEEETTTTEEEEEEEES CS
  Asparaginase_2   1 pvlvihGGAgsilktkereeavrkalkealeagykvLkeggsaldaVeaavrllEddplfnaGkGsvltedgeveldAsimdgktlraGaVagvk 95 
                     p++ ih GAg  ++  ++e+   +a  +a+e+g+k Lk+g++a++aVeaa+r+lEd+  +naG+Gs+l  dg+ve dA+i+d   + +Ga+ +v 
      CCE26928.1  26 PAIFIHAGAGFHSH--QNEHVHLEACASAAEMGMKFLKAGATATEAVEAALRILEDKEITNAGYGSNLSIDGTVECDATIVDHLGR-SGACGAVP 117
                     5799******8888..8888889999********************************************************8765.9******* PP

                     SBS-HHHHHHHHHHHCS-.........SEEEHHHHHHHHHHTT-----CGGG--HHHHHHHHHHHHCCCHS.. CS
  Asparaginase_2  96 rvknpislArlvmekseh.........vlLvgegAeefareqglelvdeesllteerlkelekakkekaekke 159
                     +++npislA+l++++s+            Lvg+gA  fa+e+g+ +  +e+l+ +++++++ +++++  +++e
      CCE26928.1 118 NIRNPISLAKLILDTSSQplslrrvppNALVGQGARVFAEEHGMVTCANEYLVSKNSRDRFFRWQEDLLRAEE 190
                     *************9997633333333357*****************************999999887555433 PP

  == domain 2  score: 48.6 bits;  conditional E-value: 3.2e-17
                     TT---EEEEEE-TTS-EEEEEEE--STTB-TTEE-STTSTTTSEEE........ETTTEEEEEEE-HHHHCCTTHHHHHHHHHHTTT CS
  Asparaginase_2 170 aklgTvGaValDsegnlAaaTSTgGltnklvGRvGDspiiGaGtYA........dnkvgAvsaTGkGeeiirellaadivalmeykg 248
                     + + T+Ga+a+D +g++Aa+ S+gG+++k  GR+G ++++G Gt +        d +++A+ ++G+Ge++  ++++++ ++++ + g
      CCE26928.1 405 TITDTIGAIAIDDRGRIAAGSSSGGIGMKHRGRLGPAALVGIGTAVvpcadddeDGTTVAAVTSGTGEHMATTMASQRCAERIFQ-G 490
                     3345***************************************9633333433334689***************99999999877.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 4016.72
//
Query:       CCE26929.1  [L=367]
Description: related to basic transcription factor 2 (35 kd SU) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-97  324.5   0.2    6.7e-97  324.3   0.2    1.0  1  Tfb4      Transcription factor Tfb4
  ------ inclusion threshold ------
       0.16   10.7   0.1       0.25   10.1   0.1    1.2  1  TSA       Type specific antigen
       0.31   10.5   3.2       0.11   11.9   0.9    1.6  2  Rogdi_lz  Rogdi leucine zipper containing protein


Domain annotation for each model (and alignments):
>> Tfb4  Transcription factor Tfb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.3   0.2  1.1e-100   6.7e-97       1     276 []      19     322 ..      19     322 .. 0.94

  Alignments for each domain:
  == domain 1  score: 324.3 bits;  conditional E-value: 1.1e-100
        Tfb4   1 pslltvvldtnpkawaeleekltlsevlasllvflNahLalnaaNkvaviashsqkakflYpseek...........ekeaskkkdvelskssknkyre 88 
                 psll++++dtnp+awa+l+ +l+ls+++a++lvf+NahLa+++aN+vav+a+h ++a +lYp++ +            + +++ +dv +++s +nky +
  CCE26929.1  19 PSLLSIIIDTNPRAWAALDGQLPLSKAIANILVFVNAHLAFSNANQVAVVAAHVNRAVWLYPTPPQpqtqpistadhVSANDTAADVPSHASAANKYPQ 117
                 79*************************************************************9998888888776545555556666666677***** PP

        Tfb4  89 frlvdelvveelkellsetskaeekaeksllagalslaLcyinrvsklaeaea..................eklksRilvvsaskdsalqyipimNviF 169
                 f +++ +++++l++l++et+ ++ +++++ l+gal+laLc+in++s+    ++                    +k+Rilv+s s+ +++qyip+mN++F
  CCE26929.1 118 FAQIETTILSSLQRLMAETTPQDLESTTTQLSGALTLALCHINKTSQALGGSSssdsnplasrmssttappPPIKARILVLSVSDSEPSQYIPTMNAVF 216
                 *********************************************887765558999************9999************************** PP

        Tfb4 170 aaqklkipidvvklggkdsafLqQasdaTkGvylkvkepkgllqyLltaflidqssRsllvlptrvsVdfRasCfchrkvvdiGfvCSvCLsilceisp 268
                 aa + +++id+++l g d++fLqQa+  T+G++l +++p+gll yL+  ++ d+++R+ +++pt+  +dfRa+Cfch+kvvd+GfvCS+CLsi+ce+ p
  CCE26929.1 217 AASHAQVAIDTLSLCG-DATFLQQACFNTNGTFLVASNPQGLLTYLMFGLIADTEARQSFITPTHDTIDFRAACFCHGKVVDMGFVCSICLSIFCEVPP 314
                 ***************9.********************************************************************************88 PP

        Tfb4 269 enkCktCe 276
                 + +C tC+
  CCE26929.1 315 QAECLTCG 322
                 77*****6 PP

>> TSA  Type specific antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   4.2e-05      0.25      95     145 ..      61     113 ..      51     128 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 4.2e-05
         TSA  95 daddanvtdaiirkrkkl..tppqpvvmpisiddrdfaidiirivqaqvraaq 145
                 +a++ +v +a +++   l  tppqp   pis++d   a d    v + + aa+
  CCE26929.1  61 NANQVAVVAAHVNRAVWLypTPPQPQTQPISTADHVSANDTAADVPSHASAAN 113
                 5666677777777777665599************9999988888888777765 PP

>> Rogdi_lz  Rogdi leucine zipper containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       1.1   6.4e+03     231     249 ..       4      24 ..       3      26 .. 0.77
   2 ?   11.9   0.9   1.9e-05      0.11      84     168 ..     114     194 ..      62     232 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.1
    Rogdi_lz 231 VmvrekvrVes..aDPsLisl 249
                 V v e+++V++  + PsL+s+
  CCE26929.1   4 VDVSEHYEVTAaeETPSLLSI 24 
                 779999999974457999998 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.9e-05
    Rogdi_lz  84 vleqLtdlrtlltqaldlLdltlktgdelsksaqflssqLrllleslseAkalLkgppepelafpangwttesaashfePplppn 168
                 + +q ++++t + ++l+ L  +++  ++l+++ ++ls  L+l+l ++++ +++L g+++++  +p  +    s +++  Pp+++ 
  CCE26929.1 114 KYPQFAQIETTILSSLQRLMAETT-PQDLESTTTQLSGALTLALCHINKTSQALGGSSSSD-SNPLAS--RMSSTTAPPPPIKAR 194
                 568999999999999999984443.445545589************************955.667632..222223333444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2598.01
//
Query:       CCE26930.1  [L=702]
Description: probable cro1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-55  187.5   0.2    2.2e-52  177.1   0.0    3.4  4  UNC45-central  Myosin-binding striated muscle assembly centra
     0.0014   18.8   2.1         34    5.1   0.0    5.8  5  HEAT           HEAT repeat
  ------ inclusion threshold ------
      0.084   11.6   0.0       0.13   11.0   0.0    1.2  1  Hex_IIIa       Hexon-associated protein (IIIa)
       0.13   12.6  14.1       0.41   11.1   0.3    5.3  6  HEAT_2         HEAT repeats
       0.72   10.0  15.7        6.1    7.0   0.0    5.8  8  Arm            Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> UNC45-central  Myosin-binding striated muscle assembly central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.2   4.3e+03      21     144 ..      17      61 ..      11      66 .. 0.38
   2 !  177.1   0.0   6.1e-56   2.2e-52       1     153 []      69     246 ..      69     246 .. 0.99
   3 ?   -1.6   0.0      0.65   2.3e+03      82     131 ..     275     322 ..     266     332 .. 0.73
   4 !    6.1   0.0    0.0027       9.8     116     146 ..     662     692 ..     658     695 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                    HHHHHHHHHH...HHHHHHHH..HHHHHHHHHHHSCCTHHHHHHHHHHHHHHHHSSHHHHHHHHTSTTHHHHHHHHHHS.S-HHHHHHHHHHHHTT CS
  UNC45-central  21 lallilskll...daakeefe..eaiseflesllekgdeddllnalsvltalFpvvpdvasalflsegflesllelveskkskkvqlaalellsaA 111
                    + ll++++l+   +++k + +  + +++ l++                                                                
     CCE26930.1  17 QTLLVFARLMeggQEDKSTCRelDELTKLLNDDA-------------------------------------------------------------- 50 
                    5566666666443222222222233444444444.............................................................. PP

                    --SSSSSHHHHHHHHHHHHHHHH-SSHH..HHH CS
  UNC45-central 112 cidkkcrkaiaknyvewLeelvkssddeklvka 144
                                          + ++++k++k 
     CCE26930.1  51 ----------------------EAQQKDKSYKS 61 
                    ......................33333322333 PP

  == domain 2  score: 177.1 bits;  conditional E-value: 6.1e-56
                    .HHHHHHHHC-T---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHHHHHSSHHHHHHHHTSTTHHHHHHHHHHS.. CS
  UNC45-central   1 ehldlllkfldmrqpesvrslallilsklldaakeefeeaiseflesllekgdeddllnalsvltalFpvvpdvasalflsegflesllelves.k 95 
                    +++d++l++ldmrqp+ vr +a+ ++s++l+aa++e+++ +s+f+ +++++g++dd+++a++v++a Fp+vpd++++lflsegfl+ l++l+++ +
     CCE26930.1  69 DCVDTVLCYLDMRQPDIVRGHATFTTSAYLKAAGDEGSRNLSAFFFERVQRGTYDDYIVAFCVAAATFPIVPDLTAQLFLSEGFLSTLGHLMRReW 164
                    79********************************************************************************************** PP

                    S-HHHHHHHHHHHHTT--SSSSSHHHHHHHHHHHHHHHH-SSHH..........................HHHHHHTTSST- CS
  UNC45-central  96 kskkvqlaalellsaAcidkkcrkaiaknyvewLeelvkssddekl........................vkalAavvLaKL 153
                    ks+kv++a+le+l+aAc+++ cr+a++k++vewLee+v+++++  +                        v+ lAav+LaKL
     CCE26930.1 165 KSRKVETACLEMLNAACMNSLCRDAVQKYCVEWLEEVVDQDPTGVTagphrlpqvqgeggsismrrhseqVQHLAAVILAKL 246
                    ******************************************9988***********************************8 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.65
                    TTHHHHHHHHHHS.S-HHHHHHHHHHHHTT--SSSSSHHHHHHHHHHHHH CS
  UNC45-central  82 egflesllelveskkskkvqlaalellsaAcidkkcrkaiaknyvewLee 131
                    + f +++l + e ++ ++  +  +e l+ A+i+ k  + ia n+  +L++
     CCE26930.1 275 DLFTKMILRQDE-QNHSTDPQHSVEGLAYASIQPKIKESIAGNG-PLLKK 322
                    445566666655.4888888899999999999999888888776.45555 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0027
                    SSSHHHHHHHHHHHHHHHH-SSHH..HHHHH CS
  UNC45-central 116 kcrkaiaknyvewLeelvkssddeklvkalA 146
                    ++ k+ia+++ve L+e +k+s ++++v+++A
     CCE26930.1 662 AREKVIAEEGVEALKECLKQSRQPEVVQIAA 692
                    56799*******************9998887 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.89   3.2e+03       4      16 ..      41      53 ..      39      66 .. 0.68
   2 ?    1.9   0.0       0.1   3.6e+02       5      29 ..     541     565 ..     539     566 .. 0.86
   3 !    5.1   0.0    0.0094        34       4      29 ..     586     611 ..     584     612 .. 0.84
   4 ?    1.6   0.0      0.13   4.5e+02       4      17 ..     628     641 ..     625     651 .. 0.85
   5 ?    3.3   0.0     0.036   1.3e+02       4      25 ..     674     696 ..     672     699 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.89
                HHHHHHT-SSHHH CS
        HEAT  4 lllkllsDpspeV 16
                 l kll+D++  +
  CCE26930.1 41 ELTKLLNDDAEAQ 53
                58899*8876553 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.1
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 + + l +++  V +aAa+ +++l++
  CCE26930.1 541 IEEQLLSSNTLVSKAAAELVCNLMQ 565
                 66778899999**********9987 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0094
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 +ll l   ++   R+aA  aL+++ +
  CCE26930.1 586 ILLALADAEDEATRSAAGGALATITS 611
                 677877889999**********9986 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.13
                 HHHHHHT-SSHHHH CS
        HEAT   4 lllkllsDpspeVR 17 
                 ++l l++Dp+p  R
  CCE26930.1 628 VILGLCNDPHPGLR 641
                 799*******9766 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.036
                 HHHHHH.T-SSHHHHHHHHHHHH CS
        HEAT   4 lllkll.sDpspeVReaAakaLg 25 
                 +l ++l ++  peV + Aa+aL 
  CCE26930.1 674 ALKECLkQSRQPEVVQIAAEALK 696
                 678899999************96 PP

>> Hex_IIIa  Hexon-associated protein (IIIa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.6e-05      0.13     256     314 ..     279     341 ..     260     354 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.6e-05
    Hex_IIIa 256 qkslvdkldkdnedadialetlsy.sldPslyea...nkvfvrklityleaalarsPvyfrel 314
                 +  l++  + ++ d++ ++e l+y s++P++ e+   n+++++kl++ l  a+ rsP+ +  l
  CCE26930.1 279 KMILRQDEQNHSTDPQHSVEGLAYaSIQPKIKESiagNGPLLKKLVETLTSAQPRSPTTYGAL 341
                 4456777777899**********9679****985555*********************99765 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.84     3e+03       2      24 ..      40      62 ..      37      92 .. 0.56
   2 ?   -2.6   0.0       2.1   7.6e+03      41      60 ..     229     248 ..     227     255 .. 0.70
   3 ?   -3.1   0.0         3   1.1e+04      49      64 ..     365     380 ..     351     392 .. 0.63
   4 ?    0.7   0.2       0.2   7.1e+02      16      27 ..     457     468 ..     445     567 .. 0.64
   5 ?   11.1   0.3   0.00011      0.41      30      79 ..     578     641 ..     539     647 .. 0.67
   6 ?    6.1   0.1    0.0039        14      30      55 ..     669     695 ..     656     701 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.84
      HEAT_2  2 daLlqalendpdpevrraairaL 24
                d L ++l +d++ + + +  +++
  CCE26930.1 40 DELTKLLNDDAEAQQKDKSYKSI 62
                44555554455544444444444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.1
      HEAT_2  41 ededpavRraaaeaLgaigd 60 
                 + +++ v++ aa  L++++ 
  CCE26930.1 229 RRHSEQVQHLAAVILAKLKA 248
                 55677888888888888764 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3
      HEAT_2  49 raaaeaLgaigdpeal 64 
                 +a a+a+g+++ p+ l
  CCE26930.1 365 KAYADAAGKMAGPDIL 380
                 5667888888877754 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.2
      HEAT_2  16 vrraairaLgri 27 
                  +r+a++aL+ri
  CCE26930.1 457 NKRTAAHALARI 468
                 455555555543 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.00011
      HEAT_2  30 pea...lpaLvellededpavRraaaeaLgai...........gdpealpaLkellddddddvv 79 
                 p+a   l +L+ l++ ed+a+R aa  aL+ i           ++p+a+++ + l++d++  ++
  CCE26930.1 578 PKAgarLHILLALADAEDEATRSAAGGALATItsfepvvryvtQRPRAVKVILGLCNDPHPGLR 641
                 3446667889999999999999999999998855555555554579999999999988877664 PP

  == domain 6  score: 6.1 bits;  conditional E-value: 0.0039
      HEAT_2  30 pealpaLvell.ededpavRraaaeaL 55 
                 +e ++aL e+l ++  p+v + aaeaL
  CCE26930.1 669 EEGVEALKECLkQSRQPEVVQIAAEAL 695
                 577888888886677788888888888 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.8   1.4e+04      11      20 ..     338     347 ..     337     349 .. 0.84
   2 ?    7.0   0.0    0.0017       6.1       5      22 ..     390     407 ..     387     413 .. 0.81
   3 ?   -3.1   0.0       2.6   9.3e+03       8      18 ..     434     444 ..     431     444 .. 0.83
   4 ?   -3.1   0.0       2.7   9.8e+03      13      21 ..     489     497 ..     486     504 .. 0.81
   5 ?   -3.0   0.1       2.5   9.1e+03      35      41 .]     517     523 ..     513     523 .. 0.87
   6 ?   -2.2   0.4       1.4     5e+03      21      39 ..     545     563 ..     543     565 .. 0.85
   7 ?    3.3   0.1     0.026        93      16      40 ..     586     610 ..     584     611 .. 0.90
   8 ?    6.8   0.1    0.0021       7.4       5      36 ..     663     695 ..     660     696 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.8
                 TTHHHHHHHH CS
         Arm  11 aGavppLvrL 20 
                 +Ga+ ++v+L
  CCE26930.1 338 YGALSIFVNL 347
                 6999999998 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0017
                 HHHHHHTTHHHHHHHHTT CS
         Arm   5 kdavieaGavppLvrLLs 22 
                 ++av +aG++p+Lv+  +
  CCE26930.1 390 CQAVFKAGIIPVLVTHSK 407
                 79************8655 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.6
                 HHHTTHHHHHH CS
         Arm   8 vieaGavppLv 18 
                 + ++Gav+ L+
  CCE26930.1 434 LAQQGAVKLLL 444
                 6799***9996 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2.7
                 HHHHHHHHT CS
         Arm  13 avppLvrLL 21 
                 a++pLv+ L
  CCE26930.1 489 AIRPLVSIL 497
                 899**9977 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 2.5
                 HHHHHTT CS
         Arm  35 ALsNLaa 41 
                 AL+NLa+
  CCE26930.1 517 ALTNLAS 523
                 9****96 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 1.4
                 TTTSSHHHHHHHHHHHHHH CS
         Arm  21 LssedeevqeeAawALsNL 39 
                 L s ++ v ++Aa  ++NL
  CCE26930.1 545 LLSSNTLVSKAAAELVCNL 563
                 6789999999999999998 PP

  == domain 7  score: 3.3 bits;  conditional E-value: 0.026
                 HHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  16 pLvrLLssedeevqeeAawALsNLa 40 
                 +L++L + ede ++ +A +AL+ ++
  CCE26930.1 586 ILLALADAEDEATRSAAGGALATIT 610
                 6999*****************9877 PP

  == domain 8  score: 6.8 bits;  conditional E-value: 0.0021
                 HHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHH CS
         Arm   5 kdavieaGavppLvrLLs.sedeevqeeAawAL 36 
                 ++ vi   +v++L ++L+ s  +ev++ Aa AL
  CCE26930.1 663 REKVIAEEGVEALKECLKqSRQPEVVQIAAEAL 695
                 56788899**********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5071.07
//
Query:       CCE26931.1  [L=587]
Description: related to endo-exonuclease yNucR [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-12   46.2   0.0    3.9e-11   42.5   0.0    2.2  1  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
    1.4e-07   31.3   0.0    2.3e-07   30.5   0.0    1.3  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
    1.4e-05   25.7   0.0    2.8e-05   24.7   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    7.1e-05   22.7   0.0    0.00013   21.8   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
     0.0083   16.8   0.0      0.018   15.7   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.048   13.2   0.0      0.092   12.3   0.0    1.4  1  MTS              Methyltransferase small domain
       0.08   12.3   0.0       0.12   11.7   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.099   11.8   0.0       0.15   11.2   0.0    1.2  1  Methyltrans_SAM  S-adenosylmethionine-dependent methyltransfe
       0.11   12.2   0.0       0.19   11.3   0.0    1.3  1  Cons_hypoth95    Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0     2e-14   3.9e-11     205     356 ..     431     579 ..     420     580 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 2e-14
  tRNA_U5-meth_tr 205 llelycGnGnfslalarnfekvlateiakssveaaqyniaankidnvqiirlsaeeltealkkkrefrrlkgidlksyafetifvdPPraGldk 298
                      l++ y G G f+++l+ +f++    +ia  s+++a++n   n +   +   l+a       + ++ f+ +k     s +   +++dPPr G d 
       CCE26931.1 431 LIDAYSGSGLFTITLSAMFQHSTGIDIAADSIASARHNASLNGLGPDRCEFLAA-------DANQLFKSVK---Y-SADETVVVLDPPRKGCDA 513
                      8899**************************************998765544443.......3344455444...2.233456778********* PP

  tRNA_U5-meth_tr 299 etvklvkkye..rilyiscnPetlkenleelset......hrverlalfdqfpythhlesGvllek 356
                      + +  ++++   rily+scn +t + ++  l +       +++e l  fd fp t h+e   +l++
       CCE26931.1 514 DFLGQLRNFGprRILYVSCNVHTQARDVGVLVRGegegarYELESLVGFDFFPQTGHVEGVAILNR 579
                      *********5559***************99986422222268999999***********8777765 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.2e-10   2.3e-07       2      84 ..     429     511 ..     428     515 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.2e-10
  Methyltransf_15   2 rvilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgv.sdkitlvlgdvfellaklklekikvdlvflSpPwGGp 84 
                      ++++D++sG+G  +i++  +f++  +i+i  + +a a hNa + g   d+  +  +d ++l++++k ++    +v+l pP  G 
       CCE26931.1 429 KYLIDAYSGSGLFTITLSAMFQHSTGIDIAADSIASARHNASLNGLgPDRCEFLAADANQLFKSVKYSAD-ETVVVLDPPRKGC 511
                      789*******************************************89*******************999.88999****8876 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.4e-08   2.8e-05       3      58 ..     433     489 ..     431     504 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.4e-08
                      EET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGB CS
  Methyltransf_25   3 dlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl...nvefvqgdaedl 58 
                      d+  G+G +t+ l++ +  ++ tg+Di+++ ++ ar++a+ +gl   ++ef+ +da++l
       CCE26931.1 433 DAYSGSGLFTITLSAMF--QHSTGIDIAADSIASARHNASLNGLgpdRCEFLAADANQL 489
                      6668************9..9*******************9999999**********997 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   6.4e-08   0.00013       6      68 ..     430     492 ..     428     505 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.4e-08
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld..nveFeqgdiee.lek 68 
                      +++D+ +G+G +t+ l   +++  + +GiDi +++i +Ar na+ +gl   ++eF ++d+++ +++
       CCE26931.1 430 YLIDAYSGSGLFTITLS-AMFQ--HSTGIDIAADSIASARHNASLNGLGpdRCEFLAADANQlFKS 492
                      57899999999999999.6666..677****************99998777*********995444 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.1e-06     0.018       5      55 ..     436     489 ..     432     502 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.1e-06
                      -TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCCT CS
  Methyltransf_11   5 cGtGrlaealakrgarvvgvDlskemlklakekaseegl...kvefvvadaekl 55 
                      +G+G+++  l   + + +g+D+++  ++ a+++as +gl   ++ef+ ada +l
       CCE26931.1 436 SGSGLFTITLSAMFQHSTGIDIAADSIASARHNASLNGLgpdRCEFLAADANQL 489
                      79*********999*************************************997 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.6e-05     0.092      35     106 ..     431     507 ..     421     515 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.6e-05
                 EEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTTSTTS-EE....EEEE--- CS
         MTS  35 vlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...vevvasdvleeveekkfd....livsNPP 106
                 ++D  +G G+ +++l ++ ++   t +d+ a +++sa++n++ n+l    +e++a d+ + ++  k+     ++v  PP
  CCE26931.1 431 LIDAYSGSGLFTITLSAMFQH--STGIDIAADSIASARHNASLNGLGpdrCEFLAADANQLFKSVKYSadetVVVLDPP 507
                 689999***********9999..79********************9888999999998877765555311226777777 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.1e-05      0.12     165     214 ..     431     480 ..     423     503 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.1e-05
        PrmA 165 vlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.kle 214
                 ++D   GSG+ +i  + +  ++ +++Di   ++ +a++Na+lN++   ++e
  CCE26931.1 431 LIDAYSGSGLFTITLSAM-FQHSTGIDIAADSIASARHNASLNGLGPdRCE 480
                 789999*******98887.57889*******************98764554 PP

>> Methyltrans_SAM  S-adenosylmethionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.7e-05      0.15     147     205 ..     450     508 ..     431     520 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.7e-05
  Methyltrans_SAM 147 skvvnvdmargslnkgrdnhrlnghdlrrvsflgydifkswgkikksgpydlviidpps 205
                      ++   +d+a  s++  r+n  lng   +r +fl  d  + +  +k s +  +v++dpp 
       CCE26931.1 450 QHSTGIDIAADSIASARHNASLNGLGPDRCEFLAADANQLFKSVKYSADETVVVLDPPR 508
                      566789******************************9999999**************95 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.8e-05      0.19      44     123 ..     430     508 ..     423     540 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.8e-05
                    EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--T.TTEEEEES-HHHHCTS--SS-EEEEEEE--SS CS
  Cons_hypoth95  44 rvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelklee.etaelkedaleallklakkkeefdivflDPPy 123
                     ++D ++GsG   +  lS   ++++ ++  +  ++  ++n +  +l   +++ l  da + +++  k ++   +v lDPP 
     CCE26931.1 430 YLIDAYSGSGLFTI-TLSAMFQHSTGIDIAADSIASARHNASLNGLGPdRCEFLAADANQLFKSV-KYSADETVVVLDPPR 508
                    579*******8888.8************************9999988757777777777776665.7777779*******5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 4000.54
//
Query:       CCE26932.1  [L=574]
Description: related to gamma-glutamyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.8e-163  543.3   0.1   6.7e-163  543.1   0.1    1.0  1  G_glu_transpept  Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  543.1   0.1  3.7e-167  6.7e-163       2     510 ..      57     566 ..      56     568 .. 0.97

  Alignments for each domain:
  == domain 1  score: 543.1 bits;  conditional E-value: 3.7e-167
                      HHHHTT--HHHHHHHHHHHHHHHSTTT-STTSEEEEEEEETTSCEEEEEEE--BB-TT--TTTTTSCBCCHHHHSSGGG-BB--HHHHHHHHHH CS
  G_glu_transpept   2 evLrkGGnAvDAavAaalclgvvepqssGiGGGgfllvydaktkkvealdaretAPaaatkdmfdkegdsklsktgalavgVPGevagleeahk 95 
                      + L +GGnA+DA v a++c+gv+ +++sGiGGGgf+lv+da++++  a+d+re A++aa++dmf  +g+   s++g+lavgVP+ev+gle++hk
       CCE26932.1  57 DLLARGGNAADALVGATFCVGVIGMYHSGIGGGGFALVRDANGSYE-AVDFREAAGEAASEDMF--QGNVAGSVYGGLAVGVPSEVRGLEYIHK 147
                      689**************************************99976.9****************..999999********************** PP

                      HH-SS-HHHHHHHHHHHHHH-EE--HHHHHHHHHCHHH.....HHTSHHHHHHHEETTSE--TTSEE--HHHHHHHHHHHHHTTHHHHSSHHHH CS
  G_glu_transpept  96 kyGklpwadllepaiklareGfpvsealaralaeaeer.....lkkdpelaklFlpegevlkagellkqpalAktLerlaeeGaeaFYkGelAe 184
                      kyG lpw+++++ ai++ar+Gf+vse+l r+++ + +      l +dp++a+ F+p+g+ +++ge+++++++A+tLe++a++Ga+ FY+G+lA 
       CCE26932.1 148 KYGALPWKTVMQGAIHVARDGFRVSEDLIRYINYTVRGqprnfLVEDPNWAQDFAPKGRLVQVGETMTRKRYADTLETIANHGADVFYTGKLAA 241
                      *******************************99776555558899************************************************* PP

                      HHHHHHHHTT-S--HHHHHH---EEES-EEEEETTCEEEEE-TTCSHHHHHHHHHHHHCTTTGGGCTTTCHHHHHHHHHHHHHHHHHHHHH-SS CS
  G_glu_transpept 185 klvaelqkagGiltaeDLanykvevreplsadyrggytvyepppssggivllqiLnilegfdlkslssnsaetlhllvEamklayadRsrylgD 278
                      ++v+ +q+ +G lta+D+a+ykv  r+  +++y +g  +y+++++++g+++l  L+++e++  +++s ++a t+h+l+Eam++ay++R++ lgD
       CCE26932.1 242 AMVKYIQDYNGTLTASDFASYKVLTRPVKNTTY-RGIHLYTMGAPASGPIALNFLKTMEQYH-NDTSDDDALTTHRLTEAMRFAYGARAS-LGD 332
                      *************************99999999.99**************************.6667778********************.*** PP

                      TTTSSSGHCHHHHHT-HHHHHHHHTT.BTTB..SGGGCSCGGCSCG.TTEEEEEEEEETTS-EEEEEEEESSTTTTSEBETTTTEBE--GGGGS CS
  G_glu_transpept 279 pdfvknptelveellskeyakeraklIkdkaatpsseyykaaeaaeesggTthlsvvDregnaVSltstinllFGsgvvvpgtGilLnnemddf 372
                      pdfvk++++l  +ll+ +ya++ +++I+d+++ p  ey ++  a + s+gT+hl ++D++g+a Slt+t+nllFG++++ p++Gi+Lnnem+df
       CCE26932.1 333 PDFVKETEALETRLLDTAYARHTRDRISDSHTLPVREYNPEGLALPSSHGTSHLVTADASGMATSLTTTVNLLFGAQIMEPESGIILNNEMNDF 426
                      **********************************9999999999999*********************************************** PP

                      BS.TS..TTSCSTTSTTB--TT----B----EEEEE.TTEEEEEEEEESGGGHHHHHHHHHHHHHTT-S-HHHHHHS--EEESSSSTEEEEST. CS
  G_glu_transpept 373 st.gvenafgldpspanaiePgkRplssmaPtivlk.dgkpvlvlGaaGGsriisavlqvlvnvldlgldlqeavdaprihhqllpdkvevEe. 463
                      s+   +n+fg++p+pan+i+P kRplss++P+i     g+ ++++GaaGGsriis+++  l ++l +g+ l+ea+ +pr+h+ql+p++v +Ee 
       CCE26932.1 427 SIpDTPNQFGFPPAPANFIRPFKRPLSSITPIIAALpSGDLYATIGAAGGSRIISSTALSLWHILEQGKTLREALTQPRLHDQLMPNTVLLEEd 520
                      **********************************999*******************************************************99 PP

                      TS.HHHHHHHHHTTSEEEESSSTCCCEEEEEEEETTTEEEEEE-TTT CS
  G_glu_transpept 464 gfseevveeLearGhkvkevedsssvvaavavakekgvleaasDprk 510
                      gf++++v++L++rGh v++v+++ s+v+++++   +g++ea+ +pr+
       CCE26932.1 521 GFDKDIVSGLKKRGHVVTWVAKGLSAVQGIIRQ-AGGQFEAVGEPRQ 566
                      **************************9999996.9***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 4141.03
//
Query:       CCE26933.1  [L=554]
Description: related to ALG11 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-86  288.0   0.0    7.4e-86  287.5   0.0    1.2  1  ALG11_N          ALG11 mannosyltransferase N-terminus
    1.1e-24   86.9   0.0    1.9e-24   86.1   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
      4e-14   53.2   0.0    1.1e-13   51.8   0.0    1.7  2  Glyco_trans_1_4  Glycosyl transferases group 1
    0.00032   20.7   0.1    0.00062   19.8   0.1    1.6  1  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> ALG11_N  ALG11 mannosyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.5   0.0   1.6e-89   7.4e-86       3     209 .]     113     321 ..     111     321 .. 0.97

  Alignments for each domain:
  == domain 1  score: 287.5 bits;  conditional E-value: 1.6e-89
     ALG11_N   3 ivgffHPycnaggGGErVLwaavkalqkekkkvkivvYtgdlevskeeilekvkerfnieldkkrikfvaLkkrklveaktyprfTLlgqslgsvllal 101
                 ivgffHP+cnaggGGErVLwaa++a+q++++k+k+vvYtgd++v+k++il++vk+rfni+l++ +++f++L+kr++v ++++prfTLlgqslgs++la+
  CCE26933.1 113 IVGFFHPFCNAGGGGERVLWAAIRATQDQWPKAKCVVYTGDHDVNKQAILQRVKSRFNIRLHPPTVQFLYLSKRHWVLPSSWPRFTLLGQSLGSMVLAW 211
                 89************************************************************************************************* PP

     ALG11_N 102 eallklvpdvfidtmGyaftyplvkll.agvkvvaYvHYPtistdmlkrv.kereakynnkeavakskllsllkllYyklfallYslvgsladvvmvns 198
                 +a++ lvpd+fidtmG+af++ l+k+l  +v+++aYvHYPtistdml+++  +++   +  +a + + ++ ++k +Y++lf++lY +vgs++dvvm+ns
  CCE26933.1 212 DAFSLLVPDIFIDTMGFAFALGLCKFLfSRVPTGAYVHYPTISTDMLESLdPTSAVGAQGVNAGQGTGTRGFVKRTYWQLFSKLYAWVGSSIDVVMTNS 310
                 ************************999678********************4456678889999999********************************* PP

     ALG11_N 199 sWTknhikslw 209
                 sWT++hiks+w
  CCE26933.1 311 SWTQAHIKSIW 321
                 *********** PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   4.2e-28   1.9e-24      11     168 ..     357     524 ..     348     531 .. 0.89

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 4.2e-28
                      TTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCC...HCSCEEEEEES.......STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESE CS
  Glycos_transf_1  11 knekkkiilsvgrlekeKgvdllikafallkkq...lnpnvklviaG......ngeeekelkklaeelelsdnviflgevsredleellknadi 95 
                      +++++ +i++++++++eK+++l+++af ++ k+      +++lv++G      + ++ ++l+ la el+++d+v+f+   s+ ++ e+l++a++
       CCE26933.1 357 EAKREQVIVCIAQFRPEKNHQLILQAFSRFVKTkskAALKARLVLIGsvrddqDSKKVYQLRLLANELGIKDRVEFHLDASWPEILEWLRKASV 450
                      567899************************99888889999***********9999************************************** PP

                      EEEEESSBSS-HHHHHHHHTT--EEEETTTTH.CHHCHTTT...SEEEE-TT-HHHHHHHHHHHHHSH...HHHHHHHHH CS
  Glycos_transf_1  96 fvlpsisEgfGivllEAmaaglpviasnaggp.aevvkdge...tGllvkpnnaealaeairkllede...elrerlgen 168
                       v  + +E+fGi ++E+ aagl+ +++n+ggp +++v+d +   tG++  ++  +++ae+++k+l+d         ++++
       CCE26933.1 451 GVNGMWNEHFGIGVVEYQAAGLISVVHNSGGPkLDIVVDVDgqpTGYHASTE--AEFAEGFEKALSDAnplV----MRRR 524
                      ****999*********************666626888888899*******99..*************84332....3333 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.2   5.3e+03      28      60 ..     139     174 ..     128     227 .. 0.57
   2 !   51.8   0.0   2.4e-17   1.1e-13       2     134 .]     362     515 ..     361     515 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
                      H.H.H.EEEEEE.S---...HHHHHHHT.T-T.TEEEE CS
  Glyco_trans_1_4  28 rkk.d.vrlviv.Gdgp.rpeeleelaa.gleerveft 60 
                      +++ + +++v++ Gd++ +++++ ++++ +   +++++
       CCE26933.1 139 QDQwPkAKCVVYtGDHDvNKQAILQRVKsR--FNIRLH 174
                      433324554444155545444444455321..223333 PP

  == domain 2  score: 51.8 bits;  conditional E-value: 2.4e-17
                      EEEEEES---GG.GTHHHHHHHH.HHHH.H.H....EEEEEES---........HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE- CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleav.pllrkk.d....vrlvivGdgp.rp.....eeleelaa..gleerveftGfv..edlaellaaadvfvaP 79 
                      +vi+++ ++ +++k+++l+l+a+   ++ k +    +rlv++G+   ++      +l+ la+  g+++rvef+     +++ e+l++a+v v+ 
       CCE26933.1 362 QVIVCIAQF-RPEKNHQLILQAFsRFVKTKsKaalkARLVLIGSVRdDQdskkvYQLRLLANelGIKDRVEFHLDAswPEILEWLRKASVGVNG 454
                      79*******.566**********5555544425678*******53221134344455534447999*******9999999************** PP

                      -..---SHHHHHHHHTT-EEEE-TGGGT.TT--....T.TSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  80 s..egfglkllEamaaglpvVatdvggi.aevv....g.engllvppgdpealaeailrLled 134
                      +  e fg+ ++E+ aagl  V+ + gg+  ++v    g  +g+ ++   ++++ae  ++ l+d
       CCE26933.1 455 MwnEHFGIGVVEYQAAGLISVVHNSGGPkLDIVvdvdGqPTGYHAS--TEAEFAEGFEKALSD 515
                      **99*********************995345557555325667777..799999999998876 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   1.4e-07   0.00062      47     167 ..     193     342 ..     124     345 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.4e-07
  Glyco_transf_4  47 plpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVltvHglye........................krllkarlk 117
                      +p +  l++sl ++  ++ ++    pD+    + +a+ ++l + +  +++p+ ++vH +                          ++  ++ ++
      CCE26933.1 193 SWPRFTLLGQSLGSMVLAWDAFSLLVPDIFIDTMGFAFALGLCKFLF-SRVPTGAYVHYPTIstdmlesldptsavgaqgvnagqgTGTRGFVKR 286
                     334555566777777777888888899*9977777777778777777.**************************************99999**** PP

  Glyco_transf_4 118 plsrllralerrllrradrviavSeatadelreryg....vpp...ekitVipnGvD 167
                      +++l+ +l++++ ++ d v ++S +t++++++ +g      +   ++i+V++++v 
      CCE26933.1 287 TYWQLFSKLYAWVGSSIDVVMTNSSWTQAHIKSIWGpnrlH-KdrnNPIAVVYPPVA 342
                     *********************************99955540.155689999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3670.14
//
Query:       CCE26934.1  [L=485]
Description: related to PHO11-secreted acid phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-24   86.3   0.0    3.1e-24   86.0   0.0    1.1  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.0   1.7e-28   3.1e-24      73     373 ..     119     382 ..      88     412 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 1.7e-28
                 S.B-HHHHHHHHHHHHHHHHHCHTCCHTTSS--TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTT CS
  His_Phos_2  73 gelthaGrkqaeelGrqfrqrYplgLlrlhltykdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaakdlldeakkklkellteg 171
                 + lt++G+++a +lG  +  rYp +L  +        +++s  +R+++SA + ++Gl   e                 + ++++++e k++++++lt++
  CCE26934.1 119 ELLTRTGKVEAAQLGLSISYRYP-KLRLP------QRVWTSTAERTVMSANNLVRGLEIDER----------------TINVVEIPEGKEEGADSLTPY 194
                 479********************.66544......479********************5555................9*****************999 PP

                 SHHTCHHHCHHHTGGHCHHHHCHCCCCCHHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHHHHCT-TTGGG..CTH..HCHHHHHHHHHHHHHHHC. CS
  His_Phos_2 172 aeacpafewpikvakrvdelvkylkedmdeniakrleqlcpgesnllakerwdklercfyeknkfdiskicdl..ydemkydalhnrylkdleelykla 268
                 + +c+ +         + +++k++ + ++ +i  rle l pg  n++  +++++  +c y++  ++ s++c    ++    ++l+++y +d ++ y+  
  CCE26934.1 195 K-SCKGYSA-----SAGSKQQKQYVKAYTAPIIARLETLAPGF-NFTLSDVVAMQAMCGYDTVIRGSSPFCSTnlFSP--DEWLQFEYGQDIQYHYNT- 283
                 9.*****88.....88899999999999999999********9.***************************7444***..******************. PP

                 .......TTTCCCCHHHHHHHHHHHHHHHCTSSSEECCSCCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS............TTT..HCCC CS
  His_Phos_2 269 kvipqEygigpeeklkiGllllnpllkkilndlqrtreeatperhvrlrlyfthdshiysllnaLglpeelagedslaa...........ldrlsaspe 356
                        g+g++   +iG ++ln+ ++ +  d+ ++           l+++fth +   ++l a+gl+++++  + +++           ++ + +s++
  CCE26934.1 284 -------GYGSPYSGAIGFPWLNATMGLLSADTAAQD----------LYISFTHRELPPTVLVAMGLFNNSQFSNGDNVndtmpldqinyNRAWVSSRI 365
                 .......***************************999..........**********************99999888889999***999999******* PP

                 S-CT-EEEEEEEEETCT CS
  His_Phos_2 357 lpymsqivfelyedsse 373
                 lp+++++ +e++ ++s+
  CCE26934.1 366 LPFLTNVAIERMNCTSN 382
                 *************9443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3483.32
//
Query:       CCE26935.1  [L=357]
Description: uncharacterized protein CPUR_00404 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0097   15.8   0.1      0.015   15.3   0.1    1.3  1  60KD_IMP  60Kd inner membrane protein
  ------ inclusion threshold ------
        0.1   12.7   0.5        1.2    9.3   0.3    2.4  2  DUF3180   Protein of unknown function (DUF3180)


Domain annotation for each model (and alignments):
>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.6e-06     0.015      93     162 ..     223     326 ..     163     330 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-06
    60KD_IMP  93 f......wikdLsapd....lpillavttflq.......qklsksk........................kmqkmmlyvmplmilffslsfpaglvlYw 150
                 +      w+ dL+a d    lp + +++   +       +     +                            m   ++  m+ ++++ +p+++ lYw
  CCE26935.1 223 LeqggclWFVDLTAMDsyhiLPAICSAMLAKSvwgrfsrA-----QlmellgrshkedgmftghfspmnrGF--MRASLVIPMFPLLAADLPSAVFLYW 314
                 1334445899999988866644444443222233333221.....122233334445566666666543222..333455668889999********** PP

    60KD_IMP 151 lvsnllsiaqql 162
                 ++s  l+++   
  CCE26935.1 315 VTSLSLNVVNDN 326
                 ***999888765 PP

>> DUF3180  Protein of unknown function (DUF3180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3   0.00013       1.2      19      67 ..      52     100 ..      39     105 .. 0.75
   2 ?    0.4   0.0     0.073   6.5e+02     107     134 ..     165     192 ..     154     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00013
     DUF3180  19 sygslpplpwlaavvllvlavvelvl..Alqvrrrirgrpgarqlepltaa 67 
                 s  s + +pw+a + l+ +a+ +++   A++  r++  ++++ +lepl+ a
  CCE26935.1  52 SIHSNVGIPWWATIPLVGVAINVVWRypAMRYARYV--QNKQVELEPLVTA 100
                 5667779*************9888753388888888..4458999998766 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.073
     DUF3180 107 llaavvavlaavalvvaglwlErlCrvP 134
                  ++ + ++l+av l+v+   l+rlC +P
  CCE26935.1 165 GWKKLPTFLSAVPLIVVSEALRRLCGAP 192
                 5777888999***************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2605.68
//
Query:       CCE26936.1  [L=271]
Description: related to syntaxin 12 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-21   76.5   5.3    1.6e-21   76.5   5.3    2.2  2  Syntaxin_2     Syntaxin-like protein
    7.7e-13   48.2   0.4      2e-12   46.9   0.4    1.8  1  SNARE          SNARE domain
  ------ inclusion threshold ------
      0.029   14.2   0.5      0.069   13.0   0.5    1.8  1  Synaptobrevin  Synaptobrevin
      0.046   13.4  12.1       0.29   10.8  12.1    2.3  1  Syntaxin       Syntaxin
      0.076   12.6   0.0       0.13   11.9   0.0    1.3  1  UL45           UL45 protein, carbohydrate-binding C-type lect
       0.21   12.2   8.4       0.62   10.7   0.1    3.1  3  DUF883         Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   5.3   5.5e-25   1.6e-21       2     100 ..      31     127 ..      30     128 .. 0.97
   2 ?    0.6   0.7      0.25   7.4e+02       3      45 ..     185     232 ..     149     250 .. 0.61

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 5.5e-25
  Syntaxin_2   2 ssnlqkinsnvstleklvkqLgtkkdteelreklhelieeinelikktnellkklsqldnsssdsqqklqkekLkkdfkealqeFqkiqrqyaekekqi 100
                 +++lqk+  +++ l k +++Lgtkkd+++lre++++  e+++el++ + e +k+l+++d+ ++  qqk+++ k ++df++alqeFq++qr++ +kek++
  CCE26936.1  31 KNKLQKLLVSNRDLSKDINSLGTKKDNPRLRERVNKGLESTRELCRGIGEGVKRLQTWDDLTK--QQKYEQTKVSSDFQTALQEFQNLQRRALDKEKAS 127
                 689*********************************************************996..9*******************************97 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.25
  Syntaxin_2   3 snlqkinsnvstleklvkq...Lgtkkd..teelreklhelieeinel 45 
                 +++ +i + v  l+ l++q   +   +d   + l ++++ + e++ + 
  CCE26936.1 185 EEIRNIEQGVGDLNVLFTQvahIVAEQDagIMTLADNVDRTHEHTMQA 232
                 445555555555555555533333334444444444444444444444 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.4   6.7e-16     2e-12       6      53 .]     218     265 ..     215     265 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 6.7e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE   6 IdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                 + +nV+++++++ +a +e+++a++yqk +R++ c++lli +iil +v+
  CCE26936.1 218 LADNVDRTHEHTMQADRETRQAARYQKAARNKSCCLLLIMGIILTIVI 265
                 679*******************************************96 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5   2.3e-05     0.069      35      85 ..     220     270 ..     183     271 .] 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
                    HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin  35 eLvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlililiiii 85 
                    + vd+t + +++a+   +qa + +++   k + l +i++++++i+il i++
     CCE26936.1 220 DNVDRTHEHTMQADRETRQAARYQKAARNKSCCLLLIMGIILTIVILAIVL 270
                    447888889999999999999999999999999999999999999999875 PP

>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  12.1   9.6e-05      0.29      84     199 ..      90     211 ..      21     212 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.6e-05
    Syntaxin  84 avdRirksqtaaLrkklkevmteynelrekireeykerieRrlevtGkevseeeie.elietgesevflqkllqeq.rga.real..se..ieeRhkev 175
                   + ++k   + +++ ++ +++e+++l+ +  ++ k  +       G++  ++      i +++ ++ +q llqeq + a ++ +  +e  i eR +e+
  CCE26936.1  90 DLTKQQKYEQTKVSSDFQTALQEFQNLQRRALDKEKASVSAARAAHGSDSHDQGGSgGSIYQDQ-DQQSQLLLQEQqQLApQDEVdfQEslIIEREEEI 187
                 444556666678899************************9998888877766654314444443.67777777777566655554222233699***** PP

    Syntaxin 176 lelekslkeLhqlFldmavLVEeQ 199
                 +++e+ + +L+ lF ++a +V eQ
  CCE26936.1 188 RNIEQGVGDLNVLFTQVAHIVAEQ 211
                 *********************999 PP

>> UL45  UL45 protein, carbohydrate-binding C-type lectin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.5e-05      0.13      25      70 ..     224     269 ..     210     270 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.5e-05
        UL45  25 ledepsvlsstsssrtkrkspaaalllilggialGvlltvfvivat 70 
                    e +++  ++++++ r+ +aa   + ++ + +G++lt+++++ +
  CCE26936.1 224 RTHEHTMQADRETRQAARYQKAARNKSCCLLLIMGIILTIVILAIV 269
                 456777888888888888888777677888999*********9876 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00021      0.62       2      55 ..      29      83 ..      28      95 .. 0.82
   2 ?    4.3   0.7      0.02        61       2      42 ..     101     141 ..     100     168 .. 0.80
   3 ?    0.7   0.2      0.27   8.1e+02      45      63 ..     223     241 ..     188     251 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
      DUF883  2 eleaeleslladleellkeaadea.geeaeelRerleerlerarerlrdaeeava 55
                +l++ l++ll + ++l k+ ++ + +++  +lRer+++ le++re +r   e v+
  CCE26936.1 29 DLKNKLQKLLVSNRDLSKDINSLGtKKDNPRLRERVNKGLESTRELCRGIGEGVK 83
                5788999999999999999988761566789**************9998887665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.02
      DUF883   2 eleaeleslladleellkeaadeageeaeelRerleerler 42 
                 ++ ++++++l++ ++l ++a d+ + +++++R+   +  ++
  CCE26936.1 101 KVSSDFQTALQEFQNLQRRALDKEKASVSAARAAHGSDSHD 141
                 67899**************************9987666555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.27
      DUF883  45 erlrdaeeavaerakeaae 63 
                 +r++++++++ +++++aa+
  CCE26936.1 223 DRTHEHTMQADRETRQAAR 241
                 3333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1384  (0.0771934); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2047.92
//
Query:       CCE26937.1  [L=663]
Description: related to nuclear envelope protein Cut11p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.7e-194  646.6   3.3   5.5e-194  646.3   3.3    1.0  1  Ndc1_Nup  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  646.3   3.3    3e-198  5.5e-194       1     611 []      17     614 ..      17     614 .. 0.97

  Alignments for each domain:
  == domain 1  score: 646.3 bits;  conditional E-value: 3e-198
    Ndc1_Nup   1 pvlhrRfvhaallllllsyllslllslsssllwswfplgpaglralllflsllpilvlrkaqlhvgprttssrlstllaslfslqtletllvyllSall 99 
                 p+lhrRf+++a lll++sy+++lll+++ss++w+w+p+g +glrall+f ++l il+lr+a++hvg +tt s+l+tl +sl++l+t+et ++y +S+ll
  CCE26937.1  17 PALHRRFSSTAILLLAVSYVEALLLADWSSYFWAWLPFGLTGLRALLIFACGLSILILRIAHYHVGLKTTESGLQTLGSSLLNLSTYETGFWYGISSLL 115
                 79************************************************************************************************* PP

    Ndc1_Nup 100 faevyiwslpedarlgwvtskssrerprlNerplflllsglvlalvysllhllfdrdrl...........sfkssfpivqpskyllkrlpsilkkslil 187
                 f+ ++++s++e+a+l+wvt++s ++rprlNerplfl +++ v+al+++++h+  d drl           ++k  +  + p++++l +lp++l++++ +
  CCE26937.1 116 FCPIFLFSMSESANLSWVTHSS-GDRPRLNERPLFLACYLGVCALLQTINHYRVDIDRLdfgvsrrssiaQSKGLSFLPLPFQTVLLKLPTVLGQCVRQ 213
                 ********************55.**********************************************99999999999******************* PP

    Ndc1_Nup 188 slvlllvspiiyylllrsfiwslalillrlflnlprsaapppldslpfnlsLllrtlllgflllllwelanllFdvyltegplkkgkpisseskdpngt 286
                 +l+ +lv+ i+yy+++rsf+ws+al++lr+f  lp++a +p+  ++p++l Ll+r+l +g+l+ + w ++n++F+v+++++plk+g+p++se+kdpng+
  CCE26937.1 214 ALSAALVCLILYYAVFRSFAWSWALLFLRPFNELPKTAVLPS--FFPTDLFLLVRCLYAGTLMNFVWSSGNTAFSVFMVREPLKHGIPLTSEAKDPNGS 310
                 *****************************************9..******************************************************* PP

    Ndc1_Nup 287 LlsGLkskkplvklfAfqELaliaqsspsrRkaIFsdidrkggstWsqilkeClklikeltqrinergqpapkaapskapknkasapvkelprlskspl 385
                 L++GLkskk+ ++ fA++EL+liaq+s++rR+aI+ didrk+gstWsqi++ C++l+k++++r++e+ +p+p+ a+      ++++ ++++ r+s +pl
  CCE26937.1 311 LVNGLKSKKLSIQSFALWELSLIAQDSEARRQAIYCDIDRKDGSTWSQIYNTCMDLLKQIENRVDEYRSPPPAVAA-----AQSAQLIQQKHRVS-APL 403
                 *********************************************************************6666666.....34677788888997.999 PP

    Ndc1_Nup 386 kkkddeifgnsltaeaspkssssskegvekalsslakspgqspsptarlsprarkllekaksrllskeqkealsestikkkvekelaqllkspligylF 484
                 ++  d +++      ++ +s+   ++gve+al+  a++pg   +p++ lsp a+k+++ +k+r lskeq+eals+++ ++++e+++++l+k   i  lF
  CCE26937.1 404 RQ--DAVLN------PTEQST-GLLSGVERALDHIARAPG--ATPVSDLSPFAKKTWRGTKDRILSKEQQEALSPEHLRSEIENWTTTLMKIGFISSLF 491
                 99..88888......888887.9*****************..889**********************************************88899*** PP

    Ndc1_Nup 485 rqslrrrlealv.....snpqliinaieaLsnLvvaSltEDqyGvVqrdvpeIlrtLtsllealekfkeglpahwtdekgeaesskrespkeldevdel 578
                  +++r+rl+ +v     ++p l+i+a++aL++L+v+Sl+EDq+G+V+rdvp+I+rtLts+++++e++k+++p+hwtd +g      r+sp    evd++
  CCE26937.1 492 CHDYRTRLAGVVmgkphAEPELYIHAAQALCHLAVHSLAEDQFGNVHRDVPTIIRTLTSVIQKVEDLKQTFPVHWTDPSG-----CRDSP----EVDQV 581
                 *******************************************************************99*******9999.....*****....***** PP

    Ndc1_Nup 579 ldalktalyeIllaFgeylndlrlspkvlrlak 611
                 ldal+++l++I+++F+++ +dl+ls  ++r+ak
  CCE26937.1 582 LDALRSGLEQIIAKFEPFRHDLHLSLGDMRMAK 614
                 ******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 5131.78
//
Query:       CCE26938.1  [L=488]
Description: uncharacterized protein CPUR_00407 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-06   26.4   0.1    1.7e-05   24.9   0.1    1.8  1  DUF4129   Domain of unknown function (DUF4129)
  ------ inclusion threshold ------
      0.018   15.1   0.4       0.27   11.2   0.0    2.4  2  NICE-3    NICE-3 protein
       0.13   11.6   5.8       0.19   11.0   5.8    1.1  1  AgrB      Accessory gene regulator B


Domain annotation for each model (and alignments):
>> DUF4129  Domain of unknown function (DUF4129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   2.9e-09   1.7e-05      11      68 ..     233     296 ..     226     297 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.9e-09
     DUF4129  11 er.gldrrpgeTprEyarrv....riapspaaalaal.aelfeearYGgrpasaeeyrrlveal 68 
                 ++  l r p +T+++y+ ++      +p + ++   l ++ +e ar++grp+s + +r+l++++
  CCE26938.1 233 AAaLLQRMPFMTMSDYLGHLshmgVLPPVDDESTTSLfLDRYEYARFSGRPLSNQRFRELMRLF 296
                 44499***************999544444555555544**********************9976 PP

>> NICE-3  NICE-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.053   3.2e+02       9      41 ..      49      82 ..      43     116 .. 0.68
   2 ?   11.2   0.0   4.5e-05      0.27     118     178 ..     236     298 ..     227     301 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.053
      NICE-3  9 vlvialgvlifvllfifakRq.imRfalksrrgp 41
                +l+i + v +++++f++  R  i   al s  ++
  CCE26938.1 49 ILTISYVVTVTIVIFVYILRLyINKTALASIPKA 82
                6788999999999999877742555555555555 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.5e-05
      NICE-3 118 klgrhpgenlrsyLlrlr.ssplksvrks.lidqlldlyehARhgpeeFgeeeylkyqellee 178
                  l+r+p   +  yL +l+  + l+ v+++ +   +ld ye AR++ ++  ++ + ++++l+ e
  CCE26938.1 236 LLQRMPFMTMSDYLGHLShMGVLPPVDDEsTTSLFLDRYEYARFSGRPLSNQRFRELMRLFAE 298
                 57899999999******9878888887651566789**********************99887 PP

>> AgrB  Accessory gene regulator B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.8   3.2e-05      0.19     105     160 ..      12      70 ..       3      82 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.2e-05
        AgrB 105 illliilliisliiilllaPvdtpnkpisskekkkklkilsiivllilliialll....k 160
                 +  +++ll++ li +ll+ P+d  ++ + + +   +  il+i  ++ ++i+++++    +
  CCE26938.1  12 YGSIYVLLFFVLIALLLITPADAIKRSLRNGQ-NYNVTILTISYVVTVTIVIFVYilrlY 70 
                 455667777788999***************97.667777666666666666665532321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       930  (0.0518713); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.37
# Mc/sec: 3924.88
//
Query:       CCE26939.1  [L=257]
Description: uncharacterized protein CPUR_00408 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        3.7    6.7   9.2        1.9    7.7   7.1    1.5  2  FmiP_Thoc5  Fms-interacting protein/Thoc5


Domain annotation for each model (and alignments):
>> FmiP_Thoc5  Fms-interacting protein/Thoc5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.28   5.1e+03     222     249 ..     127     154 ..     113     171 .. 0.44
   2 ?    7.7   7.1    0.0001       1.9     190     247 ..     190     244 ..     178     254 .. 0.54

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.28
  FmiP_Thoc5 222 ssdsdsesqeekekkkkkrekqkeekee 249
                 +s+s+s++++ +  + k+ + +++ + +
  CCE26939.1 127 ESESESDEGRGSLGRAKRARVKTSVDGQ 154
                 3334444432233333333333333333 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0001
  FmiP_Thoc5 190 kkleveIeGdveeakafnkssnsaeekkaeaessdsdsesq.eekekkkkkrekqkeek 247
                   l ve++G + ea+a +++ ++a++   eae++  d e+  +++++++kkr+k ke+k
  CCE26939.1 190 PALAVEVVGVEAEAEAKAEAEAEAKA---EAEAEGVDIEASkRQRKNQNKKRRK-KEKK 244
                 5689******9999999965555544...4555555555531122222222222.1221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1852  (0.103296); expected 358.6 (0.02)
Passed bias filter:                      750  (0.0418317); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 1886.51
//
Query:       CCE26940.1  [L=541]
Description: related to heat shock transcription factor HSF21 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-29  100.4   0.8    1.2e-28   99.5   0.8    1.4  1  HSF_DNA-bind  HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> HSF_DNA-bind  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.8   6.9e-33   1.2e-28       1      96 []      72     171 ..      72     171 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 6.9e-33
                   HHHHHHHHHCT...TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTB--TTSEEEEE..SS--XXXXXXXXX CS
  HSF_DNA-bind   1 FlkkLyklled...eelisWsedgksfvvkdkeefakevlpkyfkhsnfssFvrqLnlYgFrkvkrkeekkkkkskvweFsh..enFkrgkpelLkk 92 
                   F++kLy++led   ++lisW+++++sfv++++ +f+k vl+ yfkh+n+ssFvrqLn+YgF+k ++  ++++ +++ weF+h  ++Fkrg+ + L++
    CCE26940.1  72 FIHKLYNMLEDssiQHLISWTPTSESFVMSPTADFSK-VLSLYFKHTNISSFVRQLNMYGFHKERDVFHTQNPDTTLWEFKHgnGSFKRGDIAGLRD 167
                   9********99888999******************99.999**********************99999999***********9999*********** PP

                   XXXX CS
  HSF_DNA-bind  93 ikrk 96 
                   ikr+
    CCE26940.1 168 IKRR 171
                   **97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3723.95
//
Query:       CCE26941.1  [L=886]
Description: probable sepB protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-97  326.1   0.0      1e-94  317.2   0.0    2.7  3  Mcl1_mid        Minichromosome loss protein, Mcl1, middle reg
    4.6e-21   74.7   0.1    8.3e-08   32.8   0.0    7.0  7  WD40            WD domain, G-beta repeat
    1.5e-17   63.7   0.0    5.5e-05   23.4   0.0    6.7  7  ANAPC4_WD40     Anaphase-promoting complex subunit 4 WD40 dom
    1.8e-07   30.6   0.0      7e-06   25.4   0.0    2.1  2  Coatomer_WDAD   Coatomer WD associated region
    9.5e-05   22.4   0.4     0.0031   17.4   0.1    2.7  3  eIF2A           Eukaryotic translation initiation factor eIF2
  ------ inclusion threshold ------
      0.052   12.2   0.0       0.41    9.2   0.0    2.2  3  MMS1_N          Mono-functional DNA-alkylating methyl methane
       0.12   13.1   2.7       0.17   12.6   2.7    1.3  1  NAM-associated  No apical meristem-associated C-terminal doma
       0.13   11.2   0.0         15    4.4   0.0    2.7  2  Ge1_WD40        WD40 region of Ge1, enhancer of mRNA-decappin


Domain annotation for each model (and alignments):
>> Mcl1_mid  Minichromosome loss protein, Mcl1, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0032       7.2     119     198 ..      29     101 ..      15     175 .. 0.54
   2 ?   -2.2   0.0       0.9     2e+03      64     228 ..     241     262 ..     213     305 .. 0.53
   3 !  317.2   0.0   4.7e-98     1e-94       2     297 .]     418     714 ..     417     714 .. 0.97

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0032
    Mcl1_mid 119 kwvavaTskrylRiFsls..GvqlavlslpgpvVtlaaskdklavvyhegaplngnqeleyslldlskkkkkvlqregplpL 198
                 ++ + + s++++R+++++  G ++++   +++ V++aa+k+ ++v +         ++ ++sl+++++ + + ++ + +lp+
  CCE26941.1  29 SRLVTVGSNNTIRLYKTGsdGEPTNIDDCQEQNVAIAAGKEFFVVGS---------EDGTVSLYNIETASFEKFLLRTTLPI 101
                 44555566777777765333667777777777777777665433333.........22233333333333222333555555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.9
    Mcl1_mid  64 sLseeglllAskaskseekkpstlyyrpleswasnseWsvkLpegEevtavalgkkwvavaTskrylRiFslsGvqlavlslpgpvVtlaaskdklavv 162
                 + s +g+llAs                                                                                        
  CCE26941.1 241 AWSPNGALLASA--------------------------------------------------------------------------------------- 252
                 333444444443....................................................................................... PP

    Mcl1_mid 163 yhegaplngnqeleyslldlskkkkkvlqregplpLspgstLkwlgFseegdpviydsdgvlrvls 228
                                                                         ++dg l+v +
  CCE26941.1 253 --------------------------------------------------------GKDGKLLVWE 262
                 ........................................................4444444443 PP

  == domain 3  score: 317.2 bits;  conditional E-value: 4.7e-98
    Mcl1_mid   2 pfqpgstplgeegdrryLawNsiGvvttveedeeensieveFhDtslhrevhftdsfgftlasLseeglllAskaskseek.....kpstlyyrplesw 95 
                 +fqpgstp++  g+r+yL++N iG+v+tv++d+ + +++veF+D +++r++hftd+f ++ a+Ls++g+l++s+ ++ e++      p+ ++yrp+e w
  CCE26941.1 418 SFQPGSTPWR--GNRKYLCLNLIGFVWTVDQDS-HYTVTVEFYDHEFQRDFHFTDTFLYDKACLSDKGTLFSSPPKEFESEnedddVPACIFYRPHECW 513
                 8*********..67***************9998.9**************************************99876555789999************ PP

    Mcl1_mid  96 asnseWsvkLpegEevtavalgkkwvavaTskrylRiFslsGvqlavlslpg.pvVtlaaskdklavvyhegap.lngnqeleyslldlskkkkkvlqr 192
                 ++ ++W+++Lp+gE+vta++l++++v v+Ts++y+Ri++l G++++v++ ++ p+Vt+a+++d+++++  +g   ++g+++l y++ +++++  +++q+
  CCE26941.1 514 TQRADWRTELPRGEAVTAMSLSDSFVTVTTSANYVRIYTLCGMPYRVYRPKSsPMVTCASFRDYVLTIG-NGPIgADGQTRLLYTIQNVKRD--EICQN 609
                 *99**********************************************9999****************.66667**************999..8**** PP

    Mcl1_mid 193 egplpLspgstLkwlgFseegdpviydsdgvlrvlskarepkqarWvpvldtkklakkkss.kedsyWpvgvsedklqcillkgsekyPsvlprpllse 290
                 e++++L+p ++Lk+++Fs++gdp+iyds g+l++l ++r+p+ a+Wvp+ldt+ l + +s+ k+++y+p++v++++++ci+lkg+++yP++ prpllse
  CCE26941.1 610 EDTVALPPWTSLKSVFFSDNGDPCIYDSTGTLLTLLHWRQPSRASWVPLLDTRLLPRLASGrKNETYFPIAVADNRFHCIILKGGDQYPYF-PRPLLSE 707
                 ************************************************************999****************************.******* PP

    Mcl1_mid 291 lelklPl 297
                 +++++Pl
  CCE26941.1 708 FDFSIPL 714
                 ******8 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0013         3       9      37 ..      14      43 ..       8      44 .. 0.82
   2 ?    5.0   0.0     0.022        50      22      38 .]      68      84 ..      57      84 .. 0.82
   3 ?    4.3   0.0     0.038        84      12      36 ..     100     124 ..      93     126 .. 0.84
   4 !   12.7   0.0   8.3e-05      0.19       4      37 ..     133     167 ..     130     168 .. 0.89
   5 ?   -3.9   0.0         8   1.8e+04      14      23 ..     195     204 ..     195     206 .. 0.81
   6 !   32.8   0.0   3.7e-11   8.3e-08       3      37 ..     225     261 ..     223     262 .. 0.88
   7 ?    1.0   0.0       0.4     9e+02      15      37 ..     279     301 ..     269     302 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0013
                SS.SSEEEEEEETTSSEEEE.EETTSEEEEE CS
        WD40  9 GH.ssvtslafspdgawlas.GsdDgtvriW 37
                +H ++ t++a+  dg+ l++ Gs ++t+r++
  CCE26941.1 14 AHtQGTTCCAYTTDGSRLVTvGS-NNTIRLY 43
                6766679**********985277.*****98 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.022
                SSEEEEEETTSEEEEEE CS
        WD40 22 gawlasGsdDgtvriWd 38
                + +++ Gs+Dgtv +++
  CCE26941.1 68 KEFFVVGSEDGTVSLYN 84
                567888********997 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.038
                 SEEEEEEETTSSEEEEEETTSEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvri 36 
                 +++++a s+d +w a +sd  +v+i
  CCE26941.1 100 PIRDVALSRDAQWCAVASDELSVKI 124
                 499**********999997777776 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 8.3e-05
                 EEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawla.sGsdDgtvriW 37 
                 +++l+ H ++ +++ f+p g++ a s+  Dg ++i+
  CCE26941.1 133 VKHLREHsKPARHVTFDPQGRLAAlSCA-DGIIYIY 167
                 789****8889***********766999.*****98 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 8
                 EEEEEETTSS CS
        WD40  14 tslafspdga 23 
                 t + ++pdg+
  CCE26941.1 195 TRVVWHPDGR 204
                 56889**995 PP

  == domain 6  score: 32.8 bits;  conditional E-value: 3.7e-11
                 EEEEE.ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtl.tGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 ++r +  GH s++t+la+sp+ga+las+++Dg++ +W
  CCE26941.1 225 KQRCFaNGHlSDITALAWSPNGALLASAGKDGKLLVW 261
                 5666634****************************** PP

  == domain 7  score: 1.0 bits;  conditional E-value: 0.4
                 EEEEETTSSEEE.EEETTSEEEEE CS
        WD40  15 slafspdgawla.sGsdDgtvriW 37 
                  la++p ++ ++ + + Dg v+i+
  CCE26941.1 279 ELAWHPTKNIMSfTTT-DGEVYIY 301
                 689*******865777.***9997 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.013        29      37      69 ..      15      47 ..       5      66 .. 0.81
   2 ?    4.0   0.0     0.027        61      50      71 ..      68      89 ..      49      99 .. 0.87
   3 !   13.4   0.0   3.2e-05     0.071      14      69 ..     115     171 ..     104     182 .. 0.78
   4 ?    4.8   0.0     0.015        33      35      67 ..     188     220 ..     176     228 .. 0.81
   5 !   21.0   0.0   1.3e-07    0.0003      36      79 ..     232     275 ..     217     277 .. 0.85
   6 !   23.4   0.0   2.5e-08   5.5e-05       1      65 [.     240     301 ..     240     315 .. 0.95
   7 ?   -3.5   0.0       5.9   1.3e+04      49      66 ..     535     552 ..     519     571 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.013
  ANAPC4_WD40 37 edsevrsLaWkpdgklLavaysdgevrlldaes 69
                 + +  ++ a+  dg+ L+ + s++++rl++  s
   CCE26941.1 15 HTQGTTCCAYTTDGSRLVTVGSNNTIRLYKTGS 47
                 5666788899******************98754 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.027
  ANAPC4_WD40 50 gklLavaysdgevrlldaesgk 71
                  ++++v+ +dg+v+l+++e++ 
   CCE26941.1 68 KEFFVVGSEDGTVSLYNIETAS 89
                 5789**************9975 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 3.2e-05
  ANAPC4_WD40  14 tedgellvfRlngqrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                   +++el v+ +n + +  + +  ++++  r++ + p+g+l a +++dg + +++   
   CCE26941.1 115 VASDELSVKIVNTNDITRVkHLREHSKPARHVTFDPQGRLAALSCADGIIYIYSLTA 171
                  4556667777777777777444788999************************98654 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.015
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrllda 67 
                  d+e +  + + W+pdg+ +av +    ++ ++ 
   CCE26941.1 188 DGETEASTRVVWHPDGRAFAVPTPTKDIQTISK 220
                  56666778999**********999988888775 PP

  == domain 5  score: 21.0 bits;  conditional E-value: 1.3e-07
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  ++ s +++LaW+p+g lLa a +dg++ + + +++ vv+ ++++
   CCE26941.1 232 GHLSDITALAWSPNGALLASAGKDGKLLVWETKTQSVVQRYDYS 275
                  67789*********************************998875 PP

  == domain 6  score: 23.4 bits;  conditional E-value: 2.5e-08
  ANAPC4_WD40   1 lswcptmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrll 65 
                  l+w+p+  L+A a +dg+llv  ++ q v++     + s+v +LaW+p  +++ + + dgev ++
   CCE26941.1 240 LAWSPNGALLASAGKDGKLLVWETKTQSVVQR---YDYSNVIELAWHPTKNIMSFTTTDGEVYIY 301
                  58*****************************9...8999***********************997 PP

  == domain 7  score: -3.5 bits;  conditional E-value: 5.9
  ANAPC4_WD40  49 dgklLavaysdgevrlld 66 
                  ++++  v +s + vr++ 
   CCE26941.1 535 SDSFVTVTTSANYVRIYT 552
                  567888888888888875 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.02        46      77     165 ..      25     119 ..       4     132 .. 0.68
   2 !   25.4   0.0   3.1e-09     7e-06      25     171 ..     133     302 ..     129     318 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.02
                    XX.XXXXXXXXXXXXXXX.XXX.XXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD  77 vs.snrfavlessksvkifknf.kekktksikleyqvdkifgGalLgv..ksegsvsfYDweqg...klvrridvkkvknVvwsddgelvalvskd 165
                     +  +r + + s+++++++k   +++ t+  ++++q   i +G  ++v  +++g+vs+Y++e+    k++ r ++  +++V  s d + +a++s++
     CCE26941.1  25 TTdGSRLVTVGSNNTIRLYKTGsDGEPTNIDDCQEQNVAIAAGKEFFVvgSEDGTVSLYNIETAsfeKFLLRTTLP-IRDVALSRDAQWCAVASDE 119
                    4445668888899999999887344554444677888888888755541145558*******97222455566555.8********9999999754 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 3.1e-09
                    XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX..............XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX.XXXXXXXXXX CS
  Coatomer_WDAD  25 lkelgsieiypqslshnpngrfvlV.cgdgeyiiyt..............alalrnkaygkgldfvwvssnr.favlessksvkifknfkekktks 104
                    +k+l + +   ++++++p+gr++++ c dg + iy+               +a ++ ++  ++ +vw + +r fav + +k+++ + + + +k ++
     CCE26941.1 133 VKHLREHSKPARHVTFDPQGRLAALsCADGIIYIYSltaeepelirkvdgVIAYSDGETEASTRVVWHPDGRaFAVPTPTKDIQTISKHDWEK-QR 227
                    678888888999*************************************99999***************5555******99998765555555.48 PP

                    XXXXXXXXXXXX......XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
  Coatomer_WDAD 105 ikleyqvdkifg......GalLgvkseg.svsfYDweqgklvrridvkkvknVvwsddgelvalv.skdtvyils 171
                    +  +   ++i++      GalL    ++  + +++ +++++v+r d ++v +  w ++++++ ++ ++ +vyi++
     CCE26941.1 228 CFANGHLSDITAlawspnGALLASAGKDgKLLVWETKTQSVVQRYDYSNVIELAWHPTKNIMSFTtTDGEVYIYT 302
                    888889****************98866548******************************999983466888876 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.4   5.3e+03     144     164 ..      17      37 ..      14      46 .. 0.78
   2 ?    2.8   0.0     0.043        97      38     130 ..      79     167 ..      71     206 .. 0.59
   3 !   17.4   0.1   1.4e-06    0.0031      64     163 ..     196     293 ..     177     301 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
                 TT--EEEE-TTSSEEEEEE-T CS
       eIF2A 144 anatlvewspdgryvlTatta 164
                 + +t + + +dg+ ++T  + 
  CCE26941.1  17 QGTTCCAYTTDGSRLVTVGSN 37 
                 568999******999998765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.043
                 EEEEEESSSTT--EEECCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.CEEEEEE..EEES--EEEE-TTSSEEEEE-TTSSS-EEEEE CS
       eIF2A  38 etelyliklkkkksevvelkkegpihdvaWspkskefaviyGkmpakvslfdlk.vkviskl..eeqkrNtiffspkgklvllaGfgnlaGeleiw 130
                   +ly i  +  + e + l+++ pi dva s +++  av   +     ++ +++ +  +++l  +++++  + f+p+g+l +l+      G + i+
  CCE26941.1  79 TVSLYNI--ETASFEKFLLRTTLPIRDVALSRDAQWCAVASDELSV--KIVNTNdITRVKHLreHSKPARHVTFDPQGRLAALSC---ADGIIYIY 167
                 5566666..4556666778999999999999988887777666555..4444433444444411456678899999999866653...33445554 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 1.4e-06
                 EEEE-TTSS-EEEEESSSSC.EEEEEECS.CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEEEE CS
       eIF2A  64 dvaWspkskefaviyGkmpa.kvslfdlk.vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlvewspdgryvlT 160
                  v W p+++ fav     +  ++s +d +  +  ++ + +   ++ +sp+g l++ aG     G+l +w++k+ + +++++ +n   + w+p+ + +  
  CCE26941.1 196 RVVWHPDGRAFAVPTPTKDIqTISKHDWEkQRCFANGHLSDITALAWSPNGALLASAGK---DGKLLVWETKTQSVVQRYDYSNVIELAWHPTKNIMS- 290
                 689**********99988876899999862444555566778899************94...69****************************987544. PP

                 EE- CS
       eIF2A 161 att 163
                 +tt
  CCE26941.1 291 FTT 293
                 333 PP

>> MMS1_N  Mono-functional DNA-alkylating methyl methanesulfonate N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.22     5e+02     246     280 ..      54      88 ..      31     100 .. 0.75
   2 ?    9.2   0.0   0.00018      0.41      39      72 ..     138     171 ..     113     194 .. 0.82
   3 ?   -3.1   0.0      0.97   2.2e+03      47      78 ..     240     271 ..     217     292 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.22
      MMS1_N 246 fdtvsvasalvilksgfLfvasefGdgqlyqiear 280
                 +d+++ ++  +  ++ f++v+se G   ly ie  
  CCE26941.1  54 IDDCQEQNVAIAAGKEFFVVGSEDGTVSLYNIETA 88 
                 45666555556667788999999999999988875 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00018
      MMS1_N  39 rrsqpGqylavDPkgraiavsayekvflvyslkk 72 
                  +s+p ++++ DP+gr  a+s++++++ +ysl  
  CCE26941.1 138 EHSKPARHVTFDPQGRLAALSCADGIIYIYSLTA 171
                 578999************************8765 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.97
      MMS1_N  47 lavDPkgraiavsayekvflvyslkkkeilnr 78 
                 la +P+g  +a +  ++++lv+++k++++ +r
  CCE26941.1 240 LAWSPNGALLASAGKDGKLLVWETKTQSVVQR 271
                 45555555555555555555555555444443 PP

>> NAM-associated  No apical meristem-associated C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.7   7.8e-05      0.17      22      91 ..     721     784 ..     718     878 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.8e-05
  NAM-associated  22 ydelkkkrkpkssassspatsssestdeedssesssesseesaadsestsssrlkRPiGkkkaKekrke....a 91 
                      +e++kk+k+k++a+  p+t+++           ++  +++++ ++es++++++++P+G +++ + +++    +
      CCE26941.1 721 EKENQKKKKKKKNANGAPPTGDD----------DDDIDAMDEDGTDESDEEVEQEKPTGMTETMKLEQQfmlrD 784
                     56778887777777777777766..........22334556667888999999********9666666556642 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.012        28     182     219 ..     134     172 ..      74     180 .. 0.82
   2 ?    4.4   0.0    0.0066        15     185     216 ..     232     263 ..     210     296 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.012
    Ge1_WD40 182 lkieehs.liveaafspdGtalatasedGevkffqvyle 219
                  +++ehs    + +f p G   a +++dG++  + +  e
  CCE26941.1 134 KHLREHSkPARHVTFDPQGRLAALSCADGIIYIYSLTAE 172
                 35677774577899*****************99987655 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0066
    Ge1_WD40 185 eehsliveaafspdGtalatasedGevkffqv 216
                  + s i+  a+sp+G+ la a +dG++  +  
  CCE26941.1 232 GHLSDITALAWSPNGALLASAGKDGKLLVWET 263
                 344789999****************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (886 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 5870.37
//
Query:       CCE26942.1  [L=399]
Description: related to transcriptional repressor rco-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-14   51.7  13.1     0.0049   17.7   0.1    5.9  6  WD40          WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.018   13.7   0.5        1.5    7.3   0.0    3.0  4  Nup160        Nucleoporin Nup120/160
      0.019   14.9   0.9      0.039   14.0   0.9    1.5  1  Sigma70_r1_2  Sigma-70 factor, region 1.2
      0.049   13.6   0.0      0.091   12.8   0.0    1.4  1  DUF627        Protein of unknown function (DUF627)
      0.053   13.5   0.5          2    8.4   0.0    2.3  2  DUF5070       Domain of unknown function (DUF5070)
       0.12   12.1   0.0         11    5.7   0.0    2.4  2  BRK           BRK domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.4   7.7e-05      0.23       5      37 ..      75     109 ..      71     110 .. 0.88
   2 !   17.7   0.1   1.6e-06    0.0049       3      38 .]     116     154 ..     114     154 .. 0.74
   3 ?    4.9   0.0     0.017        52      14      37 ..     175     203 ..     158     204 .. 0.71
   4 ?   -3.5   0.1         6   1.8e+04      27      34 ..     252     259 ..     247     260 .. 0.69
   5 !   12.7   0.0   6.2e-05      0.19       9      37 ..     275     302 ..     269     303 .. 0.87
   6 !    9.0   0.1   0.00094       2.8       4      37 ..     310     348 ..     307     348 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.7e-05
                 EEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtsla.fspdgawlasGsdDgtvriW 37 
                  t++G   +vt+la   +d++ +++Gs+D+ v  W
  CCE26942.1  75 ATYRGPkAPVTCLAlGGKDSKTVFAGSWDKDVWSW 109
                 589999777******999999999******99888 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.6e-06
                 EEEEEESSSS....EEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHss....vtsla.fspdgawlasGsdDgtvriWd 38 
                 ++r ++GHs+    v   +     +++l+sG+ D+++ +Wd
  CCE26942.1 116 LVRRYSGHSDfvktVL--CaQLGGQDLLISGGADKKIIVWD 154
                 5789****55545542..23466667799***********9 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.017
                 EEEE.....EETTSSEEEEEETTSEEEEE CS
        WD40  14 tsla.....fspdgawlasGsdDgtvriW 37 
                  +la      s+d   ++s+s D+++r W
  CCE26942.1 175 QHLAldpilCSRDEIVVVSASSDPHLRRW 203
                 5555556667788888998877*****99 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 6
                 EEETTSEE CS
        WD40  27 sGsdDgtv 34 
                 ++s Dgt 
  CCE26942.1 252 TASADGTA 259
                 46669996 PP

  == domain 5  score: 12.7 bits;  conditional E-value: 6.2e-05
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +H + v+++  +p  +w++++++D +v++W
  CCE26942.1 275 THgDYVRAV--QPTEHWIFTAGRDENVKVW 302
                 484459999..******************* PP

  == domain 6  score: 9.0 bits;  conditional E-value: 0.00094
                 EEEEESS.SSEEEEE....EETTSSE.EEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtsla....fspdgaw.lasGsdDgtvriW 37 
                   tl+GH + +t+l       +  +  ++s s Dgt+r W
  CCE26942.1 310 YCTLEGHyDEITDLVllrnS-HGTPEkVCSVSIDGTIRTW 348
                 56899**989****766633.333333655689*****88 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00052       1.5     198     259 ..     115     168 ..     100     196 .. 0.77
   2 ?    1.8   0.0     0.025        73     199     247 ..     161     205 ..     159     263 .. 0.84
   3 ?    2.2   0.0     0.019        57     225     252 ..     282     309 ..     278     334 .. 0.84
   4 ?   -1.2   0.0       0.2     6e+02     233     251 ..     336     354 ..     327     375 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00052
                 TTTT.TSS--SS---TT-ECEEEEET.....TTTEEEEEETT-EEEEEETTTTEEEEE.EE-- CS
      Nup160 198 gllglladpsrrksgasvalsldvavavveigqtylfalsrdgkLrvWnlltgkclat.idll 259
                  l        rr+sg s + +  v  a    gq++l +   d+k+ vW+++tg++l t +d +
  CCE26942.1 115 AL-------VRRYSGHS-DFVKTVLCAQLG-GQDLLISGGADKKIIVWDVETGRRLHTlQDPT 168
                 33.......34888888.555555555555.*************************9987766 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.025
                 TTT.TSS--SS---TT-ECEEEEET.....TTTEEEEEETT-EEEEEET CS
      Nup160 199 llglladpsrrksgasvalsldvavavveigqtylfalsrdgkLrvWnl 247
                 l++ l+dp+ +  ++  +l+ld++  +++ ++ +++++s+d  Lr W +
  CCE26942.1 161 LHT-LQDPTTTMLAVQ-HLALDPIL-CSR-DEIVVVSASSDPHLRRWKI 205
                 444.888888888777.9*****99.999.*****************65 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.019
                 ....TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 225 vveigqtylfalsrdgkLrvWnlltgkc 252
                  v+ ++  +f++ rd +++vW  ++gk+
  CCE26942.1 282 AVQPTEHWIFTAGRDENVKVWERASGKL 309
                 45557889*************9888776 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.2
                 EEEEETT-EEEEEETTTTE CS
      Nup160 233 lfalsrdgkLrvWnlltgk 251
                 ++++s dg++r W +l ++
  CCE26942.1 336 VCSVSIDGTIRTWPILKAQ 354
                 899**********887666 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.9   1.3e-05     0.039      14      28 ..     383     397 ..     379     399 .] 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
                   X--THHHHHHHHHHH CS
  Sigma70_r1_2  14 PLLtaeEEveLAkri 28 
                    LLtaeEE eLA+ +
    CCE26942.1 383 SLLTAEEEAELAELM 397
                   6***********976 PP

>> DUF627  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     3e-05     0.091       2      50 ..     270     318 ..     269     329 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3e-05
      DUF627   2 AkdllargnhikALeiiedlisrhgedeksallhrlqGtifvklakkte 50 
                 A+d++  g++++A + +e +i+  g+de+ ++  r+ G++ ++l   ++
  CCE26942.1 270 AEDVFTHGDYVRAVQPTEHWIFTAGRDENVKVWERASGKLYCTLEGHYD 318
                 899*************************************999987765 PP

>> DUF5070  Domain of unknown function (DUF5070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00068         2     120     151 ..      92     123 ..      81     127 .. 0.80
   2 ?    3.1   0.1     0.029        86      84     141 ..     199     255 ..     182     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00068
     DUF5070 120 agwglffsgeypqdvfnwgagdtaiilrfssa 151
                      +f+g + +dv++w ++ +a++ r+s++
  CCE26942.1  92 KDSKTVFAGSWDKDVWSWHVSSSALVRRYSGH 123
                 3445689***********************98 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.029
     DUF5070  84 hrsrvalvrdlwvqkqeeiffddcdcsvllclsgekagwglffsgeypqdvfnwgagd 141
                 h  r  +  d w  +  e f d +d+  l +   + + + l+f     +dv  w a+ 
  CCE26942.1 199 HLRRWKITLDGWE-QLTECFHDRADTERLTIQEHDTSIYKLVFDEGDEEDVDLWTASA 255
                 6677778889998.56789************************999999999998753 PP

>> BRK  BRK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.014        43       3      27 ..     146     170 ..     145     181 .. 0.78
   2 ?    5.7   0.0    0.0037        11       4      17 ..     296     309 ..     294     312 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.014
         BRK   3 gderVpVinrktGkkLtGekAPklk 27 
                 +d ++ V + +tG++L   + P+  
  CCE26942.1 146 ADKKIIVWDVETGRRLHTLQDPTTT 170
                 5899************876666655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0037
         BRK   4 derVpVinrktGkk 17 
                 de+V+V +r +Gk+
  CCE26942.1 296 DENVKVWERASGKL 309
                 9***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2983.62
//
Query:       CCE26943.1  [L=980]
Description: uncharacterized protein CPUR_00412 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (980 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 7052.90
//
Query:       CCE26944.1  [L=226]
Description: probable GTP-binding protein ypt1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-65  218.8   0.5    3.4e-65  218.6   0.5    1.1  1  Ras          Ras family
    9.4e-36  122.7   0.1    1.7e-35  121.8   0.1    1.4  1  Roc          Ras of Complex, Roc, domain of DAPkinase
      3e-16   59.4   0.1    3.7e-16   59.1   0.1    1.1  1  Arf          ADP-ribosylation factor family
    1.9e-05   24.6   0.5       0.14   12.1   0.0    2.4  2  RsgA_GTPase  RsgA GTPase
    3.3e-05   23.9   0.0    0.00012   22.1   0.0    1.8  2  MMR_HSR1     50S ribosome-binding GTPase
    5.2e-05   22.9   0.4    0.00013   21.5   0.4    1.7  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00032   20.1   0.1    0.00041   19.8   0.1    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    0.00077   18.9   0.0     0.0012   18.4   0.0    1.2  1  SRPRB        Signal recognition particle receptor beta subuni
     0.0011   19.4   0.1        0.2   12.1   0.0    2.2  2  AAA          ATPase family associated with various cellular a
     0.0014   18.1   0.1      0.008   15.7   0.1    1.9  1  FeoB_N       Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.017   15.5   0.0    1.3  1  AAA_16       AAA ATPase domain
      0.045   14.0   0.0       0.17   12.2   0.0    1.8  2  AAA_22       AAA domain
      0.062   13.0   0.0       0.16   11.8   0.0    1.6  1  AAA_29       P-loop containing region of AAA domain
      0.067   12.7   0.0       0.14   11.7   0.0    1.5  1  AAA_7        P-loop containing dynein motor region
      0.091   12.0   0.0       0.23   10.7   0.0    1.6  2  Septin       Septin
      0.099   12.6   0.0       0.15   12.0   0.0    1.6  1  AAA_5        AAA domain (dynein-related subfamily)
       0.12   11.7   0.0       0.35   10.2   0.0    1.7  2  TniB         Bacterial TniB protein
       0.13   12.7   0.0       0.23   12.0   0.0    1.6  1  ABC_tran     ABC transporter
       0.15   11.6   0.1        3.1    7.3   0.0    2.2  2  AAA_25       AAA domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.6   0.5   3.7e-68   3.4e-65       1     161 [.      34     194 ..      34     195 .. 0.99

  Alignments for each domain:
  == domain 1  score: 218.6 bits;  conditional E-value: 3.7e-68
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Kl+l+Gds+vGK++lllrf++d+++e+y+sTigvdf++++ie+dgk+vkl+iwDTAGqe+f++++++yyr+a+gi +vyd+t+ +sf+nvk+w++ei r
  CCE26944.1  34 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDR 132
                 89************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 +a+e v+ +LvGnK+D+++k++v+++ ++e+a++lg++fletSAk++ nve+af +++r+i+
  CCE26944.1 133 YATEGVNKLLVGNKSDMADKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIK 194
                 ***********************************************************996 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.1   1.8e-38   1.7e-35       1     120 []      34     149 ..      34     149 .. 0.91

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 1.8e-38
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K++l+GdsgvGK++ll rf +d+++e++ stigvdf+ +++ +++g       k+vkl+iWDtaGqerfr+++++y+r+a+ +++vyd    +s++n+k
  CCE26944.1  34 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI-ELDG-------KTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDvtdMDSFNNVK 124
                 89**********************************98876.4444.......689*******************************965455789*** PP

                 HHHHHHHHHCSSS.-EEEEEE-TTT CS
         Roc  97 eWlkelkkvagks.pvilvgnkiDl 120
                 +Wl+e++++a++  + +lvgnk D+
  CCE26944.1 125 QWLQEIDRYATEGvNKLLVGNKSDM 149
                 *********9986478*******96 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.1   3.9e-19   3.7e-16      13     132 ..      31     154 ..      21     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 3.9e-19
                 TEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHH CS
         Arf  13 kelrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLka 106
                   +++ll+G  + GK+ +l ++ ++  ++  + Tig  f+++++e   k++k+++wD  Gqe+ R + ++Y++  +++  v D++d + +++ k+ L++
  CCE26944.1  31 YLFKLLLIGDSGVGKSCLLLRFADDTYTEsYISTIGvdFKIRTIELdgKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQE 129
                 5689********************99877578898744678887776699************************************************9 PP

                 HCTSGCCTTSEEEEEEE-TTSTTSS- CS
         Arf 107 lleeeelkevallvlaNKqDlpeals 132
                 + ++   + v  l+++NK D+++   
  CCE26944.1 130 I-DRYATEGVNKLLVGNKSDMADKKV 154
                 7.6778899***********987643 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00015      0.14     103     122 ..      36      55 ..      27     106 .. 0.86
   2 !   11.1   0.2   0.00029      0.28      42     102 ..     133     194 ..      91     221 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
                  EEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpe 122
                  +l+G SGvGKS L+ +++ +
   CCE26944.1  36 LLIGDSGVGKSCLLLRFADD 55 
                  79***********9877665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00029
                  HHHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEE CS
  RsgA_GTPase  42 aeekgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkegleelkellkdkts 102
                  + ++g++ ++v nK D+++++  e++  ke   +lg+++l +sak+ +++e+    ++ ++ 
   CCE26944.1 133 YATEGVNKLLVGNKSDMADKKVvEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIK 194
                  4578999************9997888999999**************9999986666666555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.3e-07   0.00012       2     107 ..      35     133 ..      34     157 .. 0.66
   2 ?   -1.0   0.0         2   1.8e+03      49      73 ..     162     189 ..     147     200 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.3e-07
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeele 98 
                  +++G + vGKS L+ +  +++   s +     d + ++++l+g   +++++Dt+G  e   + + ++ ++ +   a+ i++v d++ + ++   ++++
  CCE26944.1  35 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGktVKLQIWDTAG-QE---RFRTITSSYYR--GAHGICVVYDVT-D-MDSF-NNVK 124
                 579****************986655555555555555555544433679*******.54...23355666653..489*******77.3.4444.5566 PP

                 HHHHHTTSE CS
    MMR_HSR1  99 elleeakkp 107
                 ++l+e ++ 
  CCE26944.1 125 QWLQEIDRY 133
                 666553332 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
                 EEEECGGCS..S.HHHHHHHHHHHHHHH CS
    MMR_HSR1  49 elvDtpGli..e.gaseekglgkaflal 73 
                 e++D  G+   e +a++  ++++afl +
  CCE26944.1 162 EFADSLGIPflEtSAKNASNVEQAFLTM 189
                 6888889533343444444788887764 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.4   1.4e-07   0.00013      56     184 ..      69     185 ..      33     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.4e-07
                 SSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHH CS
    GTP_EFTU  56 iksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG....vepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqkl 150
                  k+ +i+l+  +k+ ++++ Dt G + F   ++  +r ++g ++v d+++        q  + +    +egv+  ++ NK D++++++ e   +v +++
  CCE26944.1  69 FKIRTIELD--GKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMdsfnNVKQWLQEIDRYATEGVNKLLVGNKSDMADKKVVEY--TVAKEF 163
                 455566666..*************************************9764444333444444555679999***********8876543..233334 PP

                 HHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHH CS
    GTP_EFTU 151 srkeeklekygekgekevpvvfgSalkgegvktl 184
                            +++   +p++ +Sa+++ +v++ 
  CCE26944.1 164 -----------ADS-LGIPFLETSAKNASNVEQA 185
                 ...........122.2467777777777777663 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   4.4e-07   0.00041       1      67 [.      34     100 ..      34     162 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.4e-07
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiF.dnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeyls 67 
                 k+LL+G sg GK+++      d y+   + ++g+  +++  e+   + ++l++wD  Gqe+f + + s
  CCE26944.1  34 KLLLIGDSGVGKSCLLLRFAdDTYTESYISTIGVDFKIRTIEL-DGKTVKLQIWDTAGQERFRTITSS 100
                 89************98664414455555666666666666666.35678************9876533 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.2e-06    0.0012       6     125 ..      35     150 ..      32     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.2e-06
                 EEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHH CS
       SRPRB   6 vllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllye 101
                 +ll+G s  GK  l+ r   d+++++++S     +  ++   + k  kl++ D  G+e++r+  + +    + ++g+  v D t d    ++v  +l e
  CCE26944.1  35 LLLIGDSGVGKSCLLLRFADDTYTESYISTiGVDFKIRTieLDGKTVKLQIWDTAGQERFRTITSSY---YRGAHGICVVYDVT-DMDSFNNVKQWLQE 129
                 79***************************97667777663345677788899*********865554...78899999888876.66778888888888 PP

                 HHHHHHHHTT---EEEEEE-TTST CS
       SRPRB 102 illiteklkdavdiliACnKqelf 125
                 i    +   ++v+ l+  nK++++
  CCE26944.1 130 IDRYAT---EGVNKLLVGNKSDMA 150
                 866555...788888888888875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00022       0.2       1     111 [.      35     146 ..      35     156 .. 0.69
   2 ?    5.3   0.1     0.027        25      13      60 ..     158     208 ..     158     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00022
                 EEEESSTTSSHHHHHHHHHHHH.............THEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS.TSEEEE.EETGGGHHHHHTTCCCHHHH CS
         AAA   1 vllyGppGtGKTllakavakel.............gvefleisgsell.skyvgesekkirelfkeakeka.kpsilf.iDEidalaksrsgseseeee 83 
                 +ll+G  G+GK+ l    a ++             +++ +e++g+++  + +  ++++++r + ++  + a + +++  + ++d++++           
  CCE26944.1  35 LLLIGDSGVGKSCLLLRFADDTytesyistigvdfKIRTIELDGKTVKlQIWDTAGQERFRTITSSYYRGAhGICVVYdVTDMDSFNNV---------- 123
                 69*******************6444444445444468899999999997778899999****999998888555555446677777544.......... PP

                 HHHHHHHHHHHHTTTSSSTEEEEEEESS CS
         AAA  84 rvvnqLlteldgvkkkeskvivigatnr 111
                    +q l+e+d++ ++   v  ++++n+
  CCE26944.1 124 ---KQWLQEIDRYATE--GVNKLLVGNK 146
                 ...4555555555552..3444444555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.027
                 HHHHHHHHHHTHEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTS.TSE CS
         AAA  13 llakavakelgvefleisgsell..skyvgesekkirelfkeakeka.kps 60 
                 ++ak  a +lg++fle+s+++    ++ +  ++++i+e + +  +++ kps
  CCE26944.1 158 TVAKEFADSLGIPFLETSAKNASnvEQAFLTMARQIKERMGTTTANNtKPS 208
                 6899**************999883355888888888888877766665555 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   8.5e-06     0.008       2     151 ..      34     184 ..      33     189 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.5e-06
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT..EEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEG...GGHHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg..keveivDlPGiYslsayseeekvardflleeepdvvvnvvda...tnlernL 95 
                 ++ l+G+  vGk+ l+ + ++ + + +  + + v+ k  +++l+g   +++i D  G   + ++++      + ++     vv +v d    +n+++ L
  CCE26944.1  34 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGktVKLQIWDTAGQERFRTITSSYYRGAHGIC-----VVYDVTDMdsfNNVKQWL 127
                 568999*********9999999999999999999999999998872245577888888777665554444433333.....444555441125677777 PP

                 HHHHHHHHTTSSEEEEEETHHHHHHTTEEE-H.HHHHHHHTS-EEEEBTTTTBTHHH CS
      FeoB_N  96 yLtlqllelgvpvvlalnmideaekkgieidl.kkLsekLgvpvvktsakkkegiee 151
                 + + + +  gv+ +l+ n++d a+kk +e  + k+++++Lg+p ++tsak+ +++e+
  CCE26944.1 128 QEIDRYATEGVNKLLVGNKSDMADKKVVEYTVaKEFADSLGIPFLETSAKNASNVEQ 184
                 7777788889999**************99886278*****************99987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   1.8e-05     0.017      27     106 ..      35     135 ..      34     200 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.8e-05
      AAA_16  27 vllsGesGvGKsslvrellr.alekd...........ggiflrgkcdqlesaipysalaqalareellrqllde.................aesaelea 96 
                 +ll+G+sGvGKs l+ ++++  ++++           + i l gk+++l       ++++++ + e +r + +                  ++ +++ +
  CCE26944.1  35 LLLIGDSGVGKSCLLLRFADdTYTESyistigvdfkiRTIELDGKTVKL-------QIWDTAGQ-ERFRTITSSyyrgahgicvvydvtdmDSFNNVKQ 125
                 79*************7777625555555555554433222255555555.......67777744.7777776666666666666666666677777777 PP

      AAA_16  97 wrekleeala 106
                 w +++++ ++
  CCE26944.1 126 WLQEIDRYAT 135
                 7777776666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00018      0.17       8      34 ..      35      61 ..      34      98 .. 0.77
   2 ?   -1.3   0.0       2.7   2.5e+03      38      51 ..     150     163 ..     118     201 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00018
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeak 34
                l+++G sG+GK+ ll r+++    e++
  CCE26944.1 35 LLLIGDSGVGKSCLLLRFADDTYTESY 61
                689**************9987655544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.7
      AAA_22  38 erpevvfvtlpsst 51 
                 ++++vv++t++++ 
  CCE26944.1 150 ADKKVVEYTVAKEF 163
                 55555555555544 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00017      0.16      25      39 ..      35      49 ..      24      50 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
      AAA_29 25 tlltGpsGsGKSTll 39
                 ll+G+sG+GKS ll
  CCE26944.1 35 LLLIGDSGVGKSCLL 49
                69**********997 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.14      34      72 ..      33      72 ..      22      79 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
       AAA_7 34 kpvllvGptGtGKtviikdllkkldkekyls.ltinfsaq 72
                 ++ll+G++G+GK++++ ++ +   +e+y+s + + f+ +
  CCE26944.1 33 FKLLLIGDSGVGKSCLLLRFADDTYTESYIStIGVDFKIR 72
                578****************888777777654155666655 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00025      0.23       5      71 ..      33      90 ..      30     101 .. 0.69
   2 ?   -3.1   0.0       3.8   3.6e+03      75      96 ..     179     200 ..     171     209 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00025
                EEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE--- CS
      Septin  5 ftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpg 71
                f l+++G+sg+Gk+ l+  +  ++ +e+           +t+ ++ k  +ie dg  ++l++ Dt g
  CCE26944.1 33 FKLLLIGDSGVGKSCLLLRFADDTYTES---------YISTIGVDFKIRTIELDGKTVKLQIWDTAG 90
                89**************977655444433.........233445555555555566666777778776 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.8
                 SSSHHCCCHHHHHHHHHHHHHH CS
      Septin  75 avdnskswepiveyideqfeey 96 
                 a + ++++ +++++i+e++ + 
  CCE26944.1 179 ASNVEQAFLTMARQIKERMGTT 200
                 4566888888888888887655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00016      0.15       2      23 ..      35      56 ..      34     152 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00016
                EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5  2 vlLvGppGtgKselaerlaaal 23
                +lL+G++G+gKs l  r+a  +
  CCE26944.1 35 LLLIGDSGVGKSCLLLRFADDT 56
                89**************999876 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00038      0.35      37      60 ..      34      57 ..      30      77 .. 0.88
   2 ?   -2.0   0.0       2.1     2e+03      93     122 ..     166     197 ..     149     197 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00038
        TniB 37 nlllvGdsnnGKtmivekFarlhp 60
                +lll+Gds +GK+ ++ +Fa++  
  CCE26944.1 34 KLLLIGDSGVGKSCLLLRFADDTY 57
                589*****************8864 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.1
        TniB  93 algaplkar..arvskleqqvlrllrelkvrv 122
                 +lg p+ ++  +++s+ eq+ l++ r++k r+
  CCE26944.1 166 SLGIPFLETsaKNASNVEQAFLTMARQIKERM 197
                 45555433311345566666666666666665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00024      0.23      14      62 ..      35      82 ..      33     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00024
                EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeig 62
                + ++G++G GKS Ll  +a  +  te  i   g d+k +++e   k ++
  CCE26944.1 35 LLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTVK 82
                679************99998875.6777755566666555555555444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0033       3.1      36      57 ..      35      56 ..      33      64 .. 0.86
   2 ?    1.5   0.0       0.2   1.9e+02     159     182 ..     176     200 ..     165     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0033
      AAA_25 36 allaGapgtGKttlaldlalav 57
                 ll+G++g+GK+ l+l  a ++
  CCE26944.1 35 LLLIGDSGVGKSCLLLRFADDT 56
                589*************988665 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.2
      AAA_25 159 ensnsdv.galvealeriarrtgaa 182
                  +++s v +a+++++++i++r g +
  CCE26944.1 176 AKNASNVeQAFLTMARQIKERMGTT 200
                 45566666*************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 1692.02
//
Query:       CCE26945.1  [L=288]
Description: uncharacterized protein CPUR_00414 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-68  231.0   7.1      1e-48  165.7   1.8    2.1  2  MMU163    Mitochondrial protein up-regulated during meiosis


Domain annotation for each model (and alignments):
>> MMU163  Mitochondrial protein up-regulated during meiosis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.7   1.8   5.7e-53     1e-48       8     129 ..      79     197 ..      73     212 .. 0.92
   2 !   68.3   0.3     3e-23   5.4e-19     196     247 ..     222     275 ..     216     277 .. 0.94

  Alignments for each domain:
  == domain 1  score: 165.7 bits;  conditional E-value: 5.7e-53
      MMU163   8 kekdkkppdeRilkLGktlriLserLPtlLvnpLPqeiLsPsitLhLfPsthPhLPtvkGrvaYraalWtaPvaWgsvPlvgnvkLeilserivragtv 106
                 +e+ +++ d  + kLG tlriL+erLPtlL++pLPqeiL+P+i+L LfP thPhLP+v+G+vaY aalWt+P+aW +vP++gnvkLeil+er+    ++
  CCE26945.1  79 NEHGQDAEDPNKAKLGTTLRILQERLPTLLQSPLPQEILAPNISLLLFPTTHPHLPAVSGKVAYNAALWTSPIAWNRVPIIGNVKLEILAERMTSEPMT 177
                 4556677888899************************************************************************************99 PP

      MMU163 107 leeeekeeedlgdeklvvrWkte 129
                   +++     +  e+lvvrW  +
  CCE26945.1 178 FLPRRPG---AIPEQLVVRWCEK 197
                 9999765...899*******755 PP

  == domain 2  score: 68.3 bits;  conditional E-value: 3e-23
      MMU163 196 keeeftGlfifefDeeGRiathtiehadeakgwdrt..akvvtltdWLlgkakg 247
                  ++ ftGlfif+fD +GRi+thtie+a+e+++w++   ak+v ltdWLlg++k 
  CCE26945.1 222 PNKAFTGLFIFDFDAQGRILTHTIEQAQEGGDWEKGmgAKFVGLTDWLLGQMKD 275
                 5789*******************************888*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2323.54
//
Query:       CCE26946.1  [L=743]
Description: related to nuclear VCP-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-60  202.6   0.0    3.4e-44  150.5   0.0    2.4  2  AAA              ATPase family associated with various cellul
    6.7e-12   45.0   0.3    2.4e-06   27.2   0.1    2.9  2  AAA_lid_3        AAA+ lid domain
    9.5e-10   39.1   0.2     0.0048   17.3   0.0    4.4  4  AAA_16           AAA ATPase domain
    2.3e-08   34.1   0.0     0.0047   17.0   0.0    2.6  2  AAA_14           AAA domain
    1.5e-07   31.7   0.0    4.9e-05   23.5   0.0    2.6  2  AAA_2            AAA domain (Cdc48 subfamily)
    5.4e-07   29.5   0.0     0.0017   18.1   0.0    2.5  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    6.6e-06   26.2   0.0     0.0041   17.1   0.0    3.1  2  AAA_5            AAA domain (dynein-related subfamily)
    7.7e-06   26.1   0.0      0.012   15.8   0.0    2.8  2  AAA_33           AAA domain
    4.8e-05   23.7   0.0      0.053   13.8   0.0    4.0  4  AAA_22           AAA domain
    0.00021   21.7   0.0      0.061   13.7   0.0    2.6  2  RNA_helicase     RNA helicase
    0.00026   21.5   0.0       0.23   11.9   0.0    2.7  2  ABC_tran         ABC transporter
    0.00043   20.2   0.0        1.3    8.9   0.0    2.5  2  NACHT            NACHT domain
    0.00052   19.2   0.0        0.5    9.5   0.0    2.3  2  DUF815           Protein of unknown function (DUF815)
      0.001   19.0   0.0       0.37   10.7   0.0    2.6  2  Rad17            Rad17 P-loop domain
     0.0015   18.5   0.0       0.36   10.7   0.0    2.7  2  NTPase_1         NTPase
     0.0027   17.7   0.0        2.7    8.0   0.0    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0028   17.4   0.0      0.086   12.6   0.0    2.5  2  IstB_IS21        IstB-like ATP binding protein
     0.0035   17.6   0.1        1.9    8.7   0.0    3.2  3  AAA_28           AAA domain
      0.004   17.6   0.0        2.8    8.4   0.0    2.8  2  AAA_17           AAA domain
     0.0063   15.7   0.0       0.42    9.8   0.0    2.3  2  NB-ARC           NB-ARC domain
     0.0075   16.0   0.0       0.39   10.4   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
     0.0084   16.0   0.0        6.6    6.6   0.0    2.9  3  ATPase_2         ATPase domain predominantly from Archaea
     0.0092   15.2   0.0      0.087   12.0   0.0    2.1  2  TIP49            TIP49 P-loop domain
     0.0098   15.5   0.1        2.3    7.7   0.0    3.0  3  AAA_25           AAA domain
  ------ inclusion threshold ------
      0.011   15.2   0.1      0.061   12.7   0.0    2.1  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.013   15.2   0.0        4.3    7.2   0.0    2.7  2  AAA_29           P-loop containing region of AAA domain
      0.013   16.0   0.0        1.1    9.9   0.0    2.6  2  AAA_18           AAA domain
      0.014   14.7   0.1        2.4    7.4   0.0    2.7  2  Zeta_toxin       Zeta toxin
      0.023   14.2   0.0       0.68    9.4   0.0    2.5  2  AAA_7            P-loop containing dynein motor region
      0.054   12.2   0.0       0.32    9.7   0.0    2.0  2  RNA12            RNA12 protein
      0.062   13.4   0.0         15    5.7   0.0    2.8  2  SKI              Shikimate kinase
        0.1   12.3   0.0        3.1    7.5   0.0    2.7  2  AAA_24           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   8.2e-16   4.6e-13       1     128 [.     222     350 ..     222     353 .. 0.91
   2 !  150.5   0.0   6.1e-47   3.4e-44       1     131 [.     514     643 ..     514     644 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 8.2e-16
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakp.silfiDEidalaksr.sgseseeeervvnqLlteldgvk 97 
                 v+++Gp G+GK +l+k +a el v+++++++  +     +  ek++ e f+++ ++  p +i+fi E+++ + +  s  ++++++++v  +  ++++++
  CCE26946.1 222 VVISGPRGMGKRTLVKNIACELRVPLVSLDMCFFD---PERLEKNMIEAFDAVMAQ--PrCIIFIGEVESYMARPgSALHNDFHTKAVHLFRLQMQRLE 315
                 5789****************************999...678999999999987655..55***********98887777*******************9 PP

                 TS...SSTEEEEEEESSGGGSTHHHHS.TTSSEEE CS
         AAA  98 kk...eskvivigatnrpdkldpallr.gRfdrki 128
                 +    +s+ + i++t+++d++ p +l  g f++++
  CCE26946.1 316 RTkggDSNYFAIATTTNIDEVHPNILQhGLFEEIL 350
                 99999899******************999999876 PP

  == domain 2  score: 150.5 bits;  conditional E-value: 6.1e-47
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vll+GppG+GKTl+a+ava++++++f+ i+g+ell+kyvgese+ +r+lf++a++++ p+i+f+DE+d++++ r ++++e++ rvvn+Ll+eldgvk++
  CCE26946.1 514 VLLWGPPGCGKTLIAQAVANDAKASFILINGPELLNKYVGESERAVRDLFERARSSK-PCIVFFDEMDSVVPPRANATTESGARVVNALLAELDGVKDR 611
                 79*****************************************************98.****************999*********************7 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                 ++ v vig+tn+p+ +d+a+lr gR+ ++i+i+
  CCE26946.1 612 SG-VYVIGTTNYPELIDEAILRpGRLGSQIFID 643
                 55.***************************997 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   4.3e-09   2.4e-06       1      33 [.     376     408 ..     376     427 .. 0.88
   2 !   14.7   0.0   3.5e-05      0.02       4      28 ..     670     699 ..     668     719 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 4.3e-09
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrr 33 
                 dv+l+e+A++T+G++ A++a + ++A +lA+  
  CCE26946.1 376 DVNLDEVARLTHGFVPAEIAFIANKAQRLAITK 408
                 9*****************************955 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3.5e-05
   AAA_lid_3   4 lkeLAe.....rTeGySGADlaalcreAal 28 
                 l++LA+     r+ ++SGADl++l  +Aa 
  CCE26946.1 670 LEALAQvaldpRCTNFSGADLSELRTKAAQ 699
                 7788888889**************999884 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2       3.5   1.9e+03      72     121 ..      50     103 ..      18     138 .. 0.52
   2 !   11.9   0.0    0.0004      0.22      25      45 ..     220     240 ..     209     274 .. 0.84
   3 !   17.3   0.0   8.5e-06    0.0048      25      58 ..     512     544 ..     500     556 .. 0.81
   4 ?    3.8   0.0      0.12        69     122     146 ..     558     588 ..     554     617 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.5
      AAA_16  72 laqalareellrqllde....aesaeleawrekleealaavpelagaeasrlle 121
                  ++ l+++ l  ++++     +++ae + ++e+ +e+++a+ ++a  e+++ + 
  CCE26946.1  50 SLRRLKKRPLEDAIDRVlmfhKQEAEDSSDSEAALEEAEAATAAATGESNSGFL 103
                 444444433333333334444333344444444444444333333333344444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.0004
      AAA_16  25 elvllsGesGvGKsslvrell 45 
                   v++sG++G+GK +lv+ ++
  CCE26946.1 220 TGVVISGPRGMGKRTLVKNIA 240
                 689**************9887 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 8.5e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrg 58 
                   vll G++G+GK+ +++++++ ++++ +i+++g
  CCE26946.1 512 AGVLLWGPPGCGKTLIAQAVANDAKAS-FILING 544
                 679*******************99988.555554 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.12
      AAA_16 122 llkrllallsrderplvlvlDdlq.......w 146
                 ++++l++++++ ++p ++++D+++        
  CCE26946.1 558 AVRDLFERARS-SKPCIVFFDEMDsvvppraN 588
                 56778888998.999********966666442 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     5e-05     0.028       5      75 ..     222     286 ..     219     313 .. 0.70
   2 !   17.0   0.0   8.4e-06    0.0047       5      77 ..     514     592 ..     511     625 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqe 75 
                 +vi+G+R +GK tl+k+++ el      +  ++ld   ++ ++ +++++e++ + + ++ + ++f+ E+  
  CCE26946.1 222 VVISGPRGMGKRTLVKNIACELR-----VPLVSLDMCFFDPERLEKNMIEAFDAVM-AQPRCIIFIGEVES 286
                 79*****************9988.....4444444433333333333344444432.22567788888765 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 8.4e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev.........p 77 
                 +++ G+  +GKT +++ ++++      s++ in  +  +k   ++e+  + ++e+++++k  ++f+DE+  v         +
  CCE26946.1 514 VLLWGPPGCGKTLIAQAVANDAK---ASFILINGPELLNKYVGESERAVRDLFERARSSKPCIVFFDEMDSVvppranattE 592
                 5788999*******999998877...*********9999888887777777777755668999*****98875555555552 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.031        17       7      83 ..     223     290 ..     219     323 .. 0.84
   2 !   23.5   0.0   8.7e-08   4.9e-05       4     105 ..     512     607 ..     509     622 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.031
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG---- CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk 83 
                  + gp g+Gk  l k++a  l+v    +l+ +d+  +       + +++ ++++   v a+ + i+++ E++   ++
  CCE26946.1 223 VISGPRGMGKRTLVKNIACELRV----PLVSLDMCFFDP-----ERLEKNMIEAFDAVMAQPRCIIFIGEVESYMAR 290
                 689*******************8....*******98888.....667777777777888999999999999976665 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 8.7e-08
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS...EEEEETGGG-------------HHHHHHH CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKihpkessgadvSregVqrdL 99 
                 + +ll gp g+Gkt++a+a+a+  ++    ++i ++  ell      ++v + + a     +++ +    iv++DE+d + p + +    S+  V+++L
  CCE26946.1 512 AGVLLWGPPGCGKTLIAQAVANDAKA----SFILINGPELLN-----KYVGESERAVRDLFERARSSkpcIVFFDEMDSVVPPRANATTESGARVVNAL 601
                 568999***************98885....************.....66666666666666665555677************98889999********* PP

                 HHHHH- CS
       AAA_2 100 Lqileg 105
                 L  l+g
  CCE26946.1 602 LAELDG 607
                 *98887 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0024       1.4      36      61 ..     222     247 ..     217     288 .. 0.86
   2 !   18.1   0.0   3.1e-06    0.0017      35      69 ..     513     547 ..     504     579 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0024
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvkl 61 
                 v+++Gp G+Gk tl k ia el v l
  CCE26946.1 222 VVISGPRGMGKRTLVKNIACELRVPL 247
                 899*******************9876 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 3.1e-06
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvl 69 
                  vll GpPG Gkt +a+ +a++ ++++    gP l
  CCE26946.1 513 GVLLWGPPGCGKTLIAQAVANDAKASFILINGPEL 547
                 59*************************99999976 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.027        15       2      23 ..     222     243 ..     221     252 .. 0.84
   2 !   17.1   0.0   7.4e-06    0.0041       1      98 [.     513     600 ..     513     632 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.027
                 EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5   2 vlLvGppGtgKselaerlaaal 23 
                 v++ Gp G gK++l++ +a  l
  CCE26946.1 222 VVISGPRGMGKRTLVKNIACEL 243
                 8999************998655 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 7.4e-06
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrllle 97 
                 +vlL GppG+gK+ +a+ +a   ++++  +++++      l+ ++    g+ ++    l + ar  +++i+++DE +   s v ++ +   e   + ++
  CCE26946.1 513 GVLLWGPPGCGKTLIAQAVANDAKASFILINGPE------LLNKYV---GESERAVRDLFERARssKPCIVFFDEMD---SVVPPRANATTESGARVVN 599
                 59*******************9999999999987......444444...4444445777777777778888888888...5555555555555555555 PP

                 - CS
       AAA_5  98 e 98 
                  
  CCE26946.1 600 A 600
                 5 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0083       4.7       2      34 ..     222     254 ..     222     332 .. 0.86
   2 !   15.8   0.0   2.1e-05     0.012       2      47 ..     514     561 ..     514     598 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0083
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlr 34 
                 v++ G+ G+GK tl+++++ +l + l+s d ++
  CCE26946.1 222 VVISGPRGMGKRTLVKNIACELRVPLVSLDMCF 254
                 6789***************9**99999999754 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.1e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqsktd 47 
                 vll G+pG+GK+  a+ +++  +  ++l++ ++l+++++g+ ++  +d
  CCE26946.1 514 VLLWGPPGCGKTLIAQAVANDAKasFILINGPELLNKYVGESERAVRD 561
                 6899***************998899***********999966554444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.17        97       8      29 ..     222     243 ..     219     288 .. 0.87
   2 !   13.8   0.0   9.4e-05     0.053       9      48 ..     515     545 ..     510     569 .. 0.79
   3 ?    0.2   0.0       1.5   8.5e+02      77     105 ..     558     586 ..     545     626 .. 0.58
   4 ?    0.0   0.0       1.7   9.6e+02      41      79 ..     638     694 ..     617     709 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.17
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 +v+ G+ G+GK tl+++++ +l
  CCE26946.1 222 VVISGPRGMGKRTLVKNIACEL 243
                 6899***********9998776 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 9.4e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlp 48 
                 +++G++G+GKT+ ++ +++ +         ++++++++ p
  CCE26946.1 515 LLWGPPGCGKTLIAQAVANDA---------KASFILINGP 545
                 799****************98.........6666665554 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.5
      AAA_22  77 ellealeqalraravielliiDEaqhlr..s 105
                 ++++++e+a +++  + ++  DE++ +   +
  CCE26946.1 558 AVRDLFERARSSK--PCIVFFDEMDSVVppR 586
                 3334444443333..46999*****986552 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 1.7
      AAA_22  41 evvfvtlpsstsskdllrellralglelka..................erlsseell 79 
                 +++f++lp ++++ ++l+++ r  + ++                    ++++++el+
  CCE26946.1 638 SQIFIDLPTPSERVEILQAIYRTRHKDHTPselealaqvaldprctnfSGADLSELR 694
                 678999999999999999999988877666666666666666666666555555555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.044        25       1      22 [.     222     243 ..     222     280 .. 0.88
   2 !   13.7   0.0   0.00011     0.061       1      26 [.     514     539 ..     514     591 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.044
  RNA_helicase   1 iwlyGpsgeGKStlakeLakal 22 
                   ++++Gp+g GK tl+k++a +l
    CCE26946.1 222 VVISGPRGMGKRTLVKNIACEL 243
                   689**************98777 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 0.00011
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   ++l+Gp+g+GK+++a+ +a++   ++
    CCE26946.1 514 VLLWGPPGCGKTLIAQAVANDAKASF 539
                   679**************888877655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.019        11      10      34 ..     218     242 ..     211     246 .. 0.83
   2 !   11.9   0.0   0.00042      0.23       6      67 ..     506     565 ..     503     613 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.019
                 TTSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagl 34 
                  ++ v+i G+ G GK tL+k +a +
  CCE26946.1 218 WSTGVVISGPRGMGKRTLVKNIACE 242
                 566799**************99865 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00042
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe 67 
                 l+++++  v + G+ G+GK+ +++++a+  k  +  il++g +l ++   ++++ ++ l++ 
  CCE26946.1 506 LEISPSAGVLLWGPPGCGKTLIAQAVANDAK--ASFILINGPELLNKYVGESERAVRDLFER 565
                 78999999*****************999876..56777777777776666666666666655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0031       1.7       3      26 ..     222     245 ..     220     259 .. 0.86
   2 !    8.9   0.0    0.0024       1.3       3      26 ..     514     537 ..     513     539 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0031
                 EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawae 26 
                 v++ G+ G+GK tL++ +a +++ 
  CCE26946.1 222 VVISGPRGMGKRTLVKNIACELRV 245
                 79*****************99876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0024
                 EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawae 26 
                 v+l G++G+GKT  +q +a ++++
  CCE26946.1 514 VLLWGPPGCGKTLIAQAVANDAKA 537
                 6889**************998875 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0039       2.2      55     112 ..     221     280 ..     213     285 .. 0.70
   2 !    9.5   0.0   0.00089       0.5      51      82 ..     509     540 ..     500     629 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0039
      DUF815  55 nvLLwGarGtGKSslvkallneyaeeg..Lrlievekedlk.elpklvellrerperfilf 112
                  v++ G rG+GK +lvk +  e++     L +   + e+l+ ++ + ++++ ++p r+i+f
  CCE26946.1 221 GVVISGPRGMGKRTLVKNIACELRVPLvsLDMCFFDPERLEkNMIEAFDAVMAQP-RCIIF 280
                 68999*************9998876654566666666666413555555555544.45555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00089
      DUF815  51 lpannvLLwGarGtGKSslvkallneyaeegL 82 
                  p+  vLLwG  G+GK  + +a+ n+++++ +
  CCE26946.1 509 SPSAGVLLWGPPGCGKTLIAQAVANDAKASFI 540
                 67889************999999998877653 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.027        15      49      70 ..     223     244 ..     218     270 .. 0.90
   2 !   10.7   0.0   0.00066      0.37      38     111 ..     504     578 ..     486     583 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.027
       Rad17  49 LisGPsGCgkstvvkvLskelg 70 
                 +isGP G gk t vk ++ el 
  CCE26946.1 223 VISGPRGMGKRTLVKNIACELR 244
                 79**************998875 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00066
       Rad17  38 dvLesrkkriLLisGPsGCgkstvvkvLskelgiklrewlnpvslke.pdnqksdfkgltekesrflsqiesfke 111
                 + Le  +   +L+ GP+GCgk+ + + ++     +++    p +l++     +  ++ l+e   +  + i  f e
  CCE26946.1 504 EELEISPSAGVLLWGPPGCGKTLIAQAVANDAKASFILINGPELLNKyVGESERAVRDLFERARSSKPCIVFFDE 578
                 5667777777899************99999888887754444444330223555566666666655666655555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00064      0.36       2      25 ..     222     245 ..     221     286 .. 0.89
   2 ?    5.0   0.0     0.037        20       2      26 ..     514     538 ..     513     547 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00064
                 EEEE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellks 25 
                 v+i+Gp G+GK Tlvk+++++l+ 
  CCE26946.1 222 VVISGPRGMGKRTLVKNIACELRV 245
                 79******************9975 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.037
                 EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkss 26 
                 v++ GppG GKt + + v++  k s
  CCE26946.1 514 VLLWGPPGCGKTLIAQAVANDAKAS 538
                 6788**************9988776 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0      0.01       5.7      19      45 ..     219     245 ..     199     250 .. 0.78
   2 !    8.0   0.0    0.0048       2.7      19      51 ..     511     545 ..     485     564 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.01
                 TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgv 45 
                 ++ ++++G+ G+GK tlv+++a +l v
  CCE26946.1 219 STGVVISGPRGMGKRTLVKNIACELRV 245
                 45599****************999876 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0048
                 TEEEEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve..evkSP 51 
                 ++ +lL G+ G+GKT +++++a+  + +   ++ P
  CCE26946.1 511 SAGVLLWGPPGCGKTLIAQAVANDAKASfiLINGP 545
                 4459******************9988775556666 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.33   1.9e+02      48      69 ..     220     241 ..     215     264 .. 0.85
   2 !   12.6   0.0   0.00015     0.086      45      71 ..     509     535 ..     490     543 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.33
   IstB_IS21  48 enivllGpsGvGKshlaialgv 69 
                  ++v+ Gp G+GK  l   ++ 
  CCE26946.1 220 TGVVISGPRGMGKRTLVKNIAC 241
                 5799*********998877765 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00015
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgvea 71 
                 + +++++l Gp+G GK+ +a a++ +a
  CCE26946.1 509 SPSAGVLLWGPPGCGKTLIAQAVANDA 535
                 567899****************99887 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       2.1   1.2e+03      50      86 ..      75     112 ..      56     135 .. 0.77
   2 ?    4.6   0.0     0.063        35       2      20 ..     222     240 ..     221     252 .. 0.85
   3 !    8.7   0.0    0.0035       1.9       2      35 ..     514     552 ..     513     571 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 2.1
      AAA_28  50 edllafaervleeqleeeaaa.aankvlfcDrglldtl 86 
                 ed  + +++++e++++++aa+ ++n  +++ r+++  +
  CCE26946.1  75 EDSSDSEAALEEAEAATAAATgESNSGFLLNRQMVKLW 112
                 46666777777888877777778999999999887654 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.063
      AAA_28   2 ivitGgestGKTtlleaLa 20 
                 +vi+G+ + GK tl++++a
  CCE26946.1 222 VVISGPRGMGKRTLVKNIA 240
                 8***************998 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0035
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvv..pEaareil 35 
                 + + G++++GKT +++a a++    +  +  pE   +++
  CCE26946.1 514 VLLWGPPGCGKTLIAQAVANDakaSFILIngPELLNKYV 552
                 6789***************76533333334566555555 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.024        14       2      26 ..     226     250 ..     225     276 .. 0.81
   2 !    8.4   0.0     0.005       2.8       2      35 ..     518     553 ..     517     574 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.024
                 E-TTSSHHHHHHHHHHHHTEEEEEH CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsa 26 
                 G+ G+GK t++++++ ++ ++ +s 
  CCE26946.1 226 GPRGMGKRTLVKNIACELRVPLVSL 250
                 899******************9996 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.005
                 E-TTSSHHHHHHHHHHHH..TEEEEEHHHHHHHHHH CS
      AAA_17   2 GgPGsGKgtqceklveky..gfthlsaGdllreeak 35 
                 G+PG+GK+ +++ ++ +    f  ++  +ll + + 
  CCE26946.1 518 GPPGCGKTLIAQAVANDAkaSFILINGPELLNKYVG 553
                 9*************9766336777776666666555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.068        38      23      41 ..     222     240 ..     215     245 .. 0.87
   2 !    9.8   0.0   0.00075      0.42      23      44 ..     514     535 ..     499     539 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.068
                 EEEEESTTSSHHHHHHHHC CS
      NB-ARC  23 valvGmgGvGKttlakqil 41 
                 v ++G  G+GK tl+k+i 
  CCE26946.1 222 VVISGPRGMGKRTLVKNIA 240
                 789*************997 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00075
                 EEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC  23 valvGmgGvGKttlakqilnks 44 
                 v l G +G+GKt +a+ + n+ 
  CCE26946.1 514 VLLWGPPGCGKTLIAQAVANDA 535
                 8899***************995 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.16        88      21      43 ..     218     240 ..     206     266 .. 0.77
   2 !   10.4   0.0   0.00069      0.39      22      58 ..     511     544 ..     498     556 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.16
                      SSS-EEEECSTTSSHHHHHHHHH CS
  Sigma54_activat  21 tdlsvlitGesGtGKellaraih 43 
                       ++ v+i G  G GK +l + i 
       CCE26946.1 218 WSTGVVISGPRGMGKRTLVKNIA 240
                      56789***********9999885 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00069
                      SS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEET CS
  Sigma54_activat  22 dlsvlitGesGtGKellaraiheaskrkekpfvavnc 58 
                      ++ vl+ G  G+GK+l+a+a+ +     +++f+ +n 
       CCE26946.1 511 SAGVLLWGPPGCGKTLIAQAVANDA---KASFILING 544
                      4789****************97654...466777775 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.026        15      23      44 ..     222     243 ..     217     274 .. 0.85
   2 ?    6.6   0.0     0.012       6.6      13      44 ..     504     534 ..     500     543 .. 0.72
   3 ?   -2.2   0.0       5.7   3.2e+03     104     131 ..     557     583 ..     543     606 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.026
    ATPase_2  23 yfiYGpegsGKtaLlkeiienl 44 
                 ++i Gp+g GK +L+k+i+ +l
  CCE26946.1 222 VVISGPRGMGKRTLVKNIACEL 243
                 799**************98776 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.012
    ATPase_2  13 eilerepneiyfiYGpegsGKtaLlkeiienl 44 
                 e le +p+  ++++Gp g+GKt + +  + n 
  CCE26946.1 504 EELEISPSAGVLLWGPPGCGKTLIAQA-VAND 534
                 567777888899*********955555.5444 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 5.7
    ATPase_2 104 kaielllekikkkgkkiiiiiDelqkli 131
                 +a+ +l+e  + + k  i+++De+  ++
  CCE26946.1 557 RAVRDLFERARSS-KPCIVFFDEMDSVV 583
                 4455555554433.45899999998776 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.53     3e+02      52      81 ..     221     248 ..     214     265 .. 0.86
   2 !   12.0   0.0   0.00015     0.087      52      97 ..     513     556 ..     502     568 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.53
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelgedvpfv 81 
                 +v+++Gp+g Gk  l   i+ el   vp v
  CCE26946.1 221 GVVISGPRGMGKRTLVKNIACELR--VPLV 248
                 799*************99999986..5555 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00015
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkkte 97 
                 +vLl Gp+g Gkt +a a++++   +  f+ ++g e+    v  +e
  CCE26946.1 513 GVLLWGPPGCGKTLIAQAVANDA--KASFILINGPELLNKYVGESE 556
                 79******************985..689*******99988877776 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.3   3.5e+03      37      55 ..     223     241 ..     220     243 .. 0.85
   2 !    7.7   0.0    0.0042       2.3      36      54 ..     514     532 ..     505     535 .. 0.86
   3 ?    4.0   0.0     0.056        31     127     185 ..     556     618 ..     546     620 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.3
      AAA_25  37 llaGapgtGKttlaldlal 55 
                 ++ G++g GK tl+ ++a+
  CCE26946.1 223 VISGPRGMGKRTLVKNIAC 241
                 789*******999988887 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0042
      AAA_25  36 allaGapgtGKttlaldla 54 
                 +ll+G+pg+GKt +a  +a
  CCE26946.1 514 VLLWGPPGCGKTLIAQAVA 532
                 79***********998766 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.056
      AAA_25 127 tadvdaleaaieevegvrlvviDplsralggdensnsd.....vgalvealeriarrtgaavll 185
                 +++v++l +++++  ++  v +D ++++++   n+ ++     v+al++ l+ +++r g+ v++
  CCE26946.1 556 ERAVRDLFERARS-SKPCIVFFDEMDSVVPPRANATTEsgarvVNALLAELDGVKDRSGVYVIG 618
                 5688999999999.77***************888887766664588888888888888888876 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.8     1e+03      25      43 ..     222     240 ..     219     249 .. 0.85
   2 ?   12.7   0.0   0.00011     0.061      24      42 ..     513     531 ..     503     534 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.8
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +++ Gp G GK  l k ++
    CCE26946.1 222 VVISGPRGMGKRTLVKNIA 240
                   6789*******99998875 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00011
  Mg_chelatase  24 nlllvGppGsGKtmlakrl 42 
                    +ll GppG+GKt++a+++
    CCE26946.1 513 GVLLWGPPGCGKTLIAQAV 531
                   489*************987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.037        21      23      39 ..     221     236 ..     209     243 .. 0.82
   2 ?    7.2   0.0    0.0076       4.3       7      41 ..     497     530 ..     492     533 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.037
      AAA_29  23 gatlltGpsGsGKSTll 39 
                 g ++++Gp G GK Tl+
  CCE26946.1 221 G-VVISGPRGMGKRTLV 236
                 4.89***********98 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0076
      AAA_29   7 vNWgtfdghtieidlkgatlltGpsGsGKSTllDA 41 
                 + W  +++ ++ei+++  +ll Gp G GK+ +  A
  CCE26946.1 497 IKWPALHE-ELEISPSAGVLLWGPPGCGKTLIAQA 530
                 66777777.467777677***********866555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.19   1.1e+02       1      22 [.     222     243 ..     222     277 .. 0.82
   2 ?    9.9   0.0    0.0019       1.1       1      22 [.     514     535 ..     514     620 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.19
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 ++++G+ G GK tl k+++ +l
  CCE26946.1 222 VVISGPRGMGKRTLVKNIACEL 243
                 789**************98765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0019
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 +ll G+pG+GKt +a+++++  
  CCE26946.1 514 VLLWGPPGCGKTLIAQAVANDA 535
                 7899*************97664 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.043        24     142     189 ..      19      73 ..       9      82 .. 0.81
   2 ?    7.4   0.0    0.0043       2.4      19      51 ..     514     544 ..     506     551 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.043
  Zeta_toxin 142 dRyeeevae...g.Rlvpkeehdeafeglresvealeeek...qldrvkikdrdg 189
                 dR+++++++   g R+ +     ea ++  +s+++l+++    ++drv  + +++
  CCE26946.1  19 DRVLNQLESsngGqRFKSTPDAYEAIQRSNSSLRRLKKRPledAIDRVLMFHKQE 73 
                 79999955556767************************99888899998887766 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0043
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldp 51 
                 +ll G pG+GK+ +a++++++   + +++ +++
  CCE26946.1 514 VLLWGPPGCGKTLIAQAVANDA--KASFILING 544
                 7899***************997..777777765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.27   1.5e+02      34      58 ..     220     244 ..     212     280 .. 0.84
   2 ?    9.4   0.0    0.0012      0.68      33      58 ..     511     536 ..     502     545 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.27
       AAA_7  34 kpvllvGptGtGKtviikdllkkld 58 
                   v++ Gp G GK +++k++  +l 
  CCE26946.1 220 TGVVISGPRGMGKRTLVKNIACELR 244
                 56899*************9876665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0012
       AAA_7  33 kkpvllvGptGtGKtviikdllkkld 58 
                 +  vll Gp G+GKt+i++ + +  +
  CCE26946.1 511 SAGVLLWGPPGCGKTLIAQAVANDAK 536
                 5679***************9988776 PP

>> RNA12  RNA12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00058      0.32      17      40 ..     219     242 ..     216     267 .. 0.79
   2 ?   -0.4   0.0      0.64   3.6e+02      10      44 ..     504     537 ..     498     550 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00058
       RNA12  17 ntFivvkGPrGSGkkeLvldrvlk 40 
                 +t +v++GPrG Gk+ Lv + + +
  CCE26946.1 219 STGVVISGPRGMGKRTLVKNIACE 242
                 788***************665555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.64
       RNA12  10 ewleEnvntFivvkGPrGSGkkeLvldrvlkdrkk 44 
                 e le ++++ +++ GP+G Gk+ L+ + v +d k 
  CCE26946.1 504 EELEISPSAGVLLWGPPGCGKT-LIAQAVANDAKA 537
                 5566667777899999999997.554555555544 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.055        31       1      27 [.     228     254 ..     228     271 .. 0.81
   2 ?    5.7   0.0     0.027        15       1      21 [.     520     540 ..     520     565 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.055
                 TTSSHHHHHHHHHHHHTSEEEEHHHHH CS
         SKI   1 mGaGKstvGkllAkklglefiDlDeli 27 
                 +G GK t+ k +A +l+++++ lD  +
  CCE26946.1 228 RGMGKRTLVKNIACELRVPLVSLDMCF 254
                 699*********************876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.027
                 TTSSHHHHHHHHHHHHTSEEE CS
         SKI   1 mGaGKstvGkllAkklglefi 21 
                 +G+GK+ +++++A+  + +fi
  CCE26946.1 520 PGCGKTLIAQAVANDAKASFI 540
                 6*************9999997 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.33   1.8e+02       5      22 ..     222     239 ..     219     285 .. 0.84
   2 ?    7.5   0.0    0.0056       3.1       5      22 ..     514     531 ..     511     573 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.33
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 ++i Gp g+GK tl+k++
  CCE26946.1 222 VVISGPRGMGKRTLVKNI 239
                 7999**********9998 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0056
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l++Gp+g GKT +a   
  CCE26946.1 514 VLLWGPPGCGKTLIAQAV 531
                 89**********999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 5616.72
//
Query:       CCE26947.1  [L=176]
Description: related to LSM1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-15   56.4   0.0    4.6e-15   55.1   0.0    1.6  2  LSM       LSM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   2.5e-19   4.6e-15       3      66 ..      42     117 ..      40     118 .. 0.96
   2 ?   -1.8   0.0      0.14   2.6e+03      35      46 ..     148     159 ..     147     170 .. 0.75

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 2.5e-19
                 HHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET............EEEEEEEEEEEGGGEEEEE CS
         LSM   3 lkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk............ekrklglvliRGnnivlis 66 
                 l +l++kk+ v l++g++l+G+L++ Dqf NlvL+ ++e++  +k             +  lg +l+RG+n++l++
  CCE26947.1  42 LLDLTDKKLMVVLRDGKKLIGVLRSWDQFANLVLQSTIERIYATKpgcdanapqgyyADIELGIFLVRGENVLLLG 117
                 77899**************************************99****************************986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.14
                 EEEEEEEEETTE CS
         LSM  35 vLedveetlkdk 46 
                 vL++v+e +k k
  CCE26947.1 148 VLDKVKEKKKLK 159
                 789999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1313.17
//
Query:       CCE26948.1  [L=162]
Description: related to diadenosine hexaphosphate hydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-19   70.3   0.5    1.9e-19   70.0   0.5    1.1  1  NUDIX     NUDIX domain
  ------ inclusion threshold ------
       0.06   12.9   0.0      0.082   12.5   0.0    1.2  1  NUDIX_2   Nucleotide hydrolase


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.5   2.2e-23   1.9e-19       3     116 ..      31     142 ..      29     157 .. 0.79

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 2.2e-23
                 EEEEEEE.EEETTSEEEEEEESSSSTTTEESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEECSGCSST CS
       NUDIX   3 rravgvv.llnekgevLlvrrskkpfpgWelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl.eevegelepn 99 
                 r  +gvv l ++++ vLl++++  + +gW lP+G+ e +Et eeAA RE++EE+G++ + +  lg +++++p++ +++      y+f+ + v +e++  
  CCE26948.1  31 RLVAGVVpLSRDQKYVLLIQST--RRKGWVLPKGGWESDETCEEAATREAWEEAGITIQITYDLGAIEEKRPPKSSKD---KSQYCFFqATVLDEVADW 124
                 678999966666655****988..8999****************************9988888888888777655444...455556658888888888 PP

                 STTTEEEEEEEEHHHH.H CS
       NUDIX 100 denevsevrwvpleel.l 116
                  e + +e +w++++++  
  CCE26948.1 125 PERHKRERQWFTYNQAlD 142
                 88889999********32 PP

>> NUDIX_2  Nucleotide hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.2e-06     0.082      21      88 ..       9      75 ..       5      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.2e-06
     NUDIX_2 21 ekdksveeklkrlkesyekeglrrtveavllvhrhelphvLlLqielq.efkLpggklksgedeiegLk 88
                ++ +s+++++ r k++y+++g  r v++v+   r    +vLl+q++    + Lp g  +s+e+ +e+ +
  CCE26948.1  9 SDGRSMQSRTGRNKQRYNSKG-ERLVAGVVPLSRD-QKYVLLIQSTRRkGWVLPKGGWESDETCEEAAT 75
                56688999*************.5678888766654.46899999655428*******999998777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1316.25
//
Query:       CCE26949.1  [L=179]
Description: related to arginine-tRNA-protein transferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1525.59
//
Query:       CCE26950.1  [L=361]
Description: related to rRNA processing protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-15   55.7   0.0    1.9e-14   54.3   0.0    1.7  2  RNase_PH    3' exoribonuclease family, domain 1
  ------ inclusion threshold ------
       0.01   15.9   0.0      0.018   15.0   0.0    1.4  1  RNase_PH_C  3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   2.1e-18   1.9e-14       1     132 []      35     185 ..      35     185 .. 0.75
   2 ?   -2.2   0.0      0.59   5.3e+03      28      63 ..     224     255 ..     221     283 .. 0.49

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 2.1e-18
                 EEEEEEEEESSSSTTSEEEEEEECC.EEEEEEEEEEEEEE-TCCG.--CCEEEECCCCEC....CCCEC-C.............S...HHHH..HHHHH CS
    RNase_PH   1 elRslsietgvlsqanGSaylelGd.tkvlasvtgpieerpseer.ddaegaldveveya....pfasger..........rregrpsdeei..elsrl 81 
                 ++R+l++etg+l+  nGSa++ + d t+ +++v+++ie++p  ++ d+a+++l+++              r          +  g+++de+    l+++
  CCE26950.1  35 QFRPLTAETGILPGTNGSARVCFSDgTEAIVGVKAEIEKTPGIHDaDEAGDKLNAIASAErpdeK-----RtsrewlemtiEIPGQRDDEAStvFLAEM 128
                 69*********************999*************88888777777777777775532221.....13445555544222333333333477777 PP

                 HHHHHCCTC-C......CGCCTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  82 leralrpsill......ekkpkstididitvlssdggslldalinaaslALadagip 132
                 l +al++          +++ ++ +++d+ ++s   + +l +l+++++lAL+ +++p
  CCE26950.1 129 LREALLADREFakklwiNRRFHWRLYLDVLLISPPLSYPLPLLSLTTHLALLATRLP 185
                 766666666634455559999**********************************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.59
                 EEEEEEEEEEEE-TCCG.--CCEEEECCCCECCCCEC CS
    RNase_PH  28 vlasvtgpieerpseer.ddaegaldveveyapfasg 63 
                 ++++v g i  +ps+e+   ae al v v      ++
  CCE26950.1 224 LVTTVAGNIIFDPSREElAVAESALAVSVS-----EV 255
                 567777777655555544444444444443.....22 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0     2e-06     0.018       8      50 ..     225     263 ..     218     278 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2e-06
                 EEEETTEEEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSS CS
  RNase_PH_C   8 vgkvddqfvlDptkeEedlsegdltlavagtkevvtlmkeggs 50 
                 v  v ++++ Dp+ eE +++e+ l + v++       +ke g 
  CCE26950.1 225 VTTVAGNIIFDPSREELAVAESALAVSVSEV----RAQKESGE 263
                 6668899*********************844....45555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2897.68
//
Query:       CCE26951.1  [L=253]
Description: uncharacterized protein CPUR_00420 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2053.29
//
Query:       CCE26952.1  [L=106]
Description: probable cytochrome c [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-12   47.0   0.1      6e-12   46.6   0.1    1.2  1  Cytochrom_C      Cytochrome c
    3.2e-09   37.0   1.7    1.1e-08   35.3   1.7    1.7  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
      0.004   16.9   0.5      0.014   15.1   0.1    2.0  2  Cytochrom_C550   Cytochrome c-550 domain
  ------ inclusion threshold ------
       0.05   13.2   0.0      0.058   13.0   0.0    1.2  1  Cytochrome-c551  Photosystem P840 reaction-centre cytochrome 


Domain annotation for each model (and alignments):
>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.1   1.3e-15     6e-12       2      90 ..       7     103 ..       6     105 .. 0.78

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.3e-15
                  --HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--S..........SSHHHHHHHGGGGGGG..........TT--HHH CS
  Cytochrom_C   2 arGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsap..........rddfekkkltaempark.........erlteqe 80 
                  ++G++ f+  Ca+CH+ve+ g ++  gp+l g+  r++++ +g s+++ ++++              +++k                       +e++
   CCE26952.1   7 QKGAKMFKSRCAQCHTVEKDGGNKI-GPALHGLFGRKTGSVEGYSYTDANKQKGItwdddtlfayLENPKK----------YipgtkmafgGLKKEKD 93 
                  79*************9988777665.7********************999999995555555555555555..........355555555366778** PP

                  HHHHHHHHHT CS
  Cytochrom_C  81 iadlaaYLks 90 
                  ++dl+aYLk+
   CCE26952.1  94 RKDLIAYLKD 103
                  ********97 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   1.7   2.4e-12   1.1e-08       2      67 .]       5     101 ..       4     101 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 2.4e-12
  Cytochrome_CBB3   2 aaaaGaalykknCasCHg...kggag..........................psla.grdwepdalvdiiknGkgaMp....afggqlsdeelw 61 
                      ++++Ga+ +k+ Ca+CH+   +   g                          +++  g +w++d+l+++++n k+  p    afgg  ++++++
       CCE26952.1   5 DIQKGAKMFKSRCAQCHTvekD---GgnkigpalhglfgrktgsvegysytdANKQkGITWDDDTLFAYLENPKKYIPgtkmAFGGLKKEKDRK 95 
                      7899**************6532...33568888888998888888888887744444669999***********877777779*********** PP

  Cytochrome_CBB3  62 alvaYl 67 
                      +l+aYl
       CCE26952.1  96 DLIAYL 101
                      *****8 PP

>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   3.2e-06     0.014      25      43 ..       5      23 ..       1      36 [. 0.86
   2 ?   -0.2   0.0      0.16   7.3e+02      71      82 ..      66      77 ..      63     105 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.2e-06
                    HHHHHHHHHHHHTHHHHGG CS
  Cytochrom_C550 25 qlkkgkklFeaeCaqCHvg 43
                    +++kg k+F++ CaqCH+ 
      CCE26952.1  5 DIQKGAKMFKSRCAQCHTV 23
                    899**************74 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.16
                    HHHHHHHS-B-T CS
  Cytochrom_C550 71 alvdylknPtsy 82
                    +l +yl+nP+ y
      CCE26952.1 66 TLFAYLENPKKY 77
                    577899999888 PP

>> Cytochrome-c551  Photosystem P840 reaction-centre cytochrome c-551
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.3e-05     0.058     138     161 ..       2      25 ..       1      74 [. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
                      TT--HHHHHHHHHHHTTSSS-SHH CS
  Cytochrome-c551 138 aGedlaaakklvdrrcnkchalka 161
                      aG d+++  k++++rc++ch+++ 
       CCE26952.1   2 AGGDIQKGAKMFKSRCAQCHTVEK 25 
                      6889999**************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 755.60
//
Query:       CCE26953.1  [L=743]
Description: related to nuclear VCP-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-58  195.6   0.0    1.4e-42  145.2   0.0    2.5  2  AAA              ATPase family associated with various cellul
    5.5e-12   45.3   0.2    1.1e-06   28.3   0.1    3.0  2  AAA_lid_3        AAA+ lid domain
      5e-11   43.3   0.2      0.003   18.0   0.0    4.2  4  AAA_16           AAA ATPase domain
    1.3e-07   31.5   0.0     0.0015   18.3   0.0    2.4  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.9e-07   31.4   0.0       0.02   15.0   0.0    2.6  2  AAA_33           AAA domain
    3.4e-07   30.4   0.0      0.038   14.0   0.0    2.7  2  AAA_14           AAA domain
      9e-07   29.0   0.1     0.0029   17.6   0.0    3.0  2  AAA_5            AAA domain (dynein-related subfamily)
    1.2e-06   28.9   0.0      0.019   15.3   0.0    2.7  2  RNA_helicase     RNA helicase
    2.6e-06   27.7   0.0    6.7e-05   23.1   0.0    2.5  2  AAA_2            AAA domain (Cdc48 subfamily)
    3.1e-06   27.5   0.0      0.026   14.8   0.0    3.9  4  AAA_22           AAA domain
    9.5e-05   22.8   0.0       0.19   12.2   0.0    3.0  2  AAA_17           AAA domain
    0.00012   22.1   0.0       0.32   10.9   0.0    2.5  2  Rad17            Rad17 P-loop domain
    0.00014   21.8   0.0        0.4   10.7   0.0    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00018   21.8   0.0        1.3    9.3   0.0    3.2  3  AAA_28           AAA domain
    0.00052   20.5   0.0       0.72   10.4   0.0    2.6  2  ABC_tran         ABC transporter
    0.00061   20.3   0.0        1.3    9.6   0.0    3.0  2  AAA_18           AAA domain
    0.00071   19.5   0.2        1.6    8.6   0.0    2.6  2  NACHT            NACHT domain
     0.0016   18.3   0.0       0.45   10.4   0.0    2.6  2  NTPase_1         NTPase
     0.0017   17.6   0.0       0.17   11.1   0.0    2.2  2  TIP49            TIP49 P-loop domain
     0.0028   16.8   0.0        1.2    8.2   0.0    2.3  2  DUF815           Protein of unknown function (DUF815)
     0.0049   16.1   0.0       0.73    9.0   0.0    2.4  2  NB-ARC           NB-ARC domain
     0.0056   15.8   0.0      0.012   14.8   0.0    1.4  1  Parvo_NS1        Parvovirus non-structural protein NS1
     0.0089   15.8   0.1       0.18   11.5   0.0    2.2  2  IstB_IS21        IstB-like ATP binding protein
     0.0097   15.6   0.0        2.1    8.1   0.0    2.7  2  AAA_29           P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.012   15.0   0.1      0.082   12.3   0.0    2.1  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.014   15.1   0.0       0.61    9.8   0.0    2.4  2  Cytidylate_kin   Cytidylate kinase
      0.017   14.7   0.0        1.1    8.7   0.0    2.6  2  AAA_7            P-loop containing dynein motor region
      0.028   14.3   0.0         15    5.4   0.0    2.8  3  ATPase_2         ATPase domain predominantly from Archaea
      0.029   14.5   0.0         13    5.9   0.0    3.0  2  SKI              Shikimate kinase
      0.031   14.0   0.0        2.6    7.7   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
      0.049   13.3   0.0        1.2    8.7   0.0    2.3  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
       0.12   12.2   0.0        4.5    7.2   0.0    2.7  3  AAA_3            ATPase family associated with various cellul
       0.14   12.0   0.9          2    8.1   0.0    2.8  3  AAA_11           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   3.5e-15   1.9e-12       1     128 [.     222     350 ..     222     353 .. 0.89
   2 !  145.2   0.0   2.6e-45   1.4e-42       1     131 [.     514     643 ..     514     644 .. 0.97

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 3.5e-15
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakp.silfiDEidalaksr.sgseseeeervvnqLlteldgvk 97 
                 v+++Gp G+GK +l+k +a++lgv++++++         ++ ek++ e f+++ ++  p +i+fi  +++ + +  s  ++++++++v+q+  e+++++
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQLGVPLISLNTCFRD---PEKLEKNMIEAFDAVMAQ--PrCIIFIGKVERYMARPgSALHNDFHTKAVDQFELEMQRLE 315
                 5789************************9987666...678999999999987655..55***********98887777************99999998 PP

                 TS...SSTEEEEEEESSGGGSTHHHHS.TTSSEEE CS
         AAA  98 kk...eskvivigatnrpdkldpallr.gRfdrki 128
                 +     s+ + i++tn++d++ p +l  g f++++
  CCE26953.1 316 RGkgeASNYFAIATTNNIDEVHPDILQsGLFEEIL 350
                 87777889******************999999876 PP

  == domain 2  score: 145.2 bits;  conditional E-value: 2.6e-45
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vll+GppG+GKTl+a+ava++++++f+ ++g+ell+kyvgese+ +r+lf++a++++ p+i+f+DE+d++++ r + ++e+++rvvn+Llteldg  ++
  CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDAQASFILVKGPELLNKYVGESERAVRDLFQRARASK-PCIVFFDEMDSVVPPRANLTTESGTRVVNALLTELDGGGDR 611
                 79****************************************************998.****************999*******************997 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                  s v vig+tn+p+ +d+a+lr gR+ r+i+i+
  CCE26953.1 612 -SGVYVIGTTNYPELIDEAILRpGRLGRQIFID 643
                 .55***************************997 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1     2e-09   1.1e-06       1      36 [.     376     411 ..     376     426 .. 0.90
   2 !   13.7   0.0   7.7e-05     0.042       9      34 ..     678     708 ..     669     721 .. 0.66

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 2e-09
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgik 36 
                 dv+l+e+A++T+G++ A++a + ++A  lA++   +
  CCE26953.1 376 DVNLDEVARLTHGFVPAEIAFIAKKAKQLAVKNFSD 411
                 9******************************98655 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 7.7e-05
   AAA_lid_3   9 e..rTeGySGADlaalcr...eAallAlrrg 34 
                    r++++SGADl +l     e++++ l+++
  CCE26953.1 678 LdeRCNNFSGADLGELRTmavESVMARLQQD 708
                 366**********999663333335555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       3.5   1.9e+03      72     119 ..      50     101 ..      18     138 .. 0.51
   2 !   15.7   0.0   2.8e-05     0.015      23      49 ..     216     244 ..     205     320 .. 0.86
   3 !   18.0   0.0   5.5e-06     0.003      24      58 ..     510     542 ..     501     556 .. 0.80
   4 ?    4.0   0.0      0.11        60     122     146 ..     558     589 ..     550     617 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3.5
      AAA_16  72 laqalareellrqllde....aesaeleawrekleealaavpelagaeasrl 119
                  ++ l+++ l  ++++     +++ae + ++e+ +e+++a+ ++a  e+++ 
  CCE26953.1  50 SLRRLKKRPLEDAIDRVlmfhKQEAEDSSDSEAALEEAEAATAAATGESNSG 101
                 4444444333333333344443333333334433344333333333333333 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 2.8e-05
      AAA_16  23 rp..elvllsGesGvGKsslvrellrale 49 
                  +    v++sG++G+GK +lv+ ++r+l 
  CCE26953.1 216 CEcfTGVVISGPRGMGKRTLVKNIARQLG 244
                 4456899******************9986 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 5.5e-06
      AAA_16  24 p.elvllsGesGvGKsslvrellralekdggiflrg 58 
                 p + vll G++G+GK+ +++++++ ++++   f+  
  CCE26953.1 510 PrGGVLLWGPPGCGKTLIAQAVANDAQAS---FILV 542
                 4479*******************999988...4333 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.11
      AAA_16 122 llkrllallsrderplvlvlDdlq........w 146
                 ++++l+++++  ++p ++++D+++         
  CCE26953.1 558 AVRDLFQRARA-SKPCIVFFDEMDsvvppranL 589
                 56777888888.999********9555555543 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00058      0.31      35      63 ..     221     249 ..     212     327 .. 0.74
   2 !   18.3   0.0   2.8e-06    0.0015      36      69 ..     514     547 ..     506     580 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00058
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklki 63 
                  v+++Gp G+Gk tl k ia++lgv l +
  CCE26953.1 221 GVVISGPRGMGKRTLVKNIARQLGVPLIS 249
                 699*********************98754 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 2.8e-06
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvl 69 
                 vll GpPG Gkt +a+ +a++ ++++    gP l
  CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDAQASFILVKGPEL 547
                 9*************************99999976 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0    0.0001     0.056       2      41 ..     222     261 ..     222     322 .. 0.86
   2 !   15.0   0.0   3.7e-05      0.02       2      47 ..     514     561 ..     514     581 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.0001
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtd 41 
                 v++ G+ G+GK tl+++++++lg+ l+s +t++r  ++ +
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQLGVPLISLNTCFRDPEKLE 261
                 6789**************************9887655544 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3.7e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqsktd 47 
                 vll G+pG+GK+  a+ +++  +  ++l+  ++l+++++g+ ++  +d
  CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDAQasFILVKGPELLNKYVGESERAVRD 561
                 6899***************988899***********999965554443 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00011     0.058       5      45 ..     222     261 ..     219     295 .. 0.66
   2 !   14.0   0.0     7e-05     0.038       5      76 ..     514     582 ..     511     624 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00011
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyin..ldderdkk 45 
                 +vi+G+R +GK tl+k+++++l       + +n  + d+++ +
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQLG---VPLISLNtcFRDPEKLE 261
                 79*****************9998...33444432133333333 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 7e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++ G+  +GKT +++ ++++      s++ ++  +  +k   ++e+  + ++++++++k  ++f+DE+  v
  CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDAQ---ASFILVKGPELLNKYVGESERAVRDLFQRARASKPCIVFFDEMDSV 582
                 678899********999998887...9999999999888777776655555555555568999*****9887 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1    0.0048       2.6       2      26 ..     222     246 ..     221     253 .. 0.88
   2 !   17.6   0.0   5.4e-06    0.0029       1     103 [.     513     605 ..     513     632 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0048
                 EEEE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnre 26 
                 v++ Gp G gK++l++ +a+ l+ +
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQLGVP 246
                 8999***************998765 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 5.4e-06
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrllle 97 
                 +vlL GppG+gK+ +a+ +a   ++++  v +++      l+ ++    g+ ++    l + ar  +++i+++DE +   s v ++ +   e  ++ ++
  CCE26953.1 513 GVLLWGPPGCGKTLIAQAVANDAQASFILVKGPE------LLNKYV---GESERAVRDLFQRARasKPCIVFFDEMD---SVVPPRANLTTESGTRVVN 599
                 59*********************99999999988......444444...3333333555555555588888888888...5555555555555555555 PP

                 -SSSEE CS
       AAA_5  98 eggelv 103
                  + ++ 
  CCE26953.1 600 ALLTEL 605
                 555555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00086      0.47       1     106 [.     222     331 ..     222     332 .. 0.74
   2 !   15.3   0.0   3.5e-05     0.019       1      63 [.     514     567 ..     514     590 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00086
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl...klkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdee.nps.dlaelirlvsstpyplnmasleek 92 
                   ++++Gp+g GK tl+k++a++l   l   ++  +d     ++  + +d    q+ ++i+ +g+v+  +  p   l++ + +    +++l+m++le  
    CCE26953.1 222 VVISGPRGMGKRTLVKNIARQLGVPLislNTCFRDPEKLEKNMIEAFDAVMAQPRCIIF-IGKVERYMaRPGsALHNDFHTKAVDQFELEMQRLERG 317
                   689*******************9655555444444444466666788888888888887.6666666667777888888888888888888888876 PP

  RNA_helicase  93 gtlftSkvvivtsN 106
                   +   +  + i+t+N
    CCE26953.1 318 KGEASNYFAIATTN 331
                   66666677778887 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.5e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkd 63 
                   ++l+Gp+g+GK+++a+ +a++ + ++         +  +  + +++Y g+    + D+ q+  
    CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDAQASF---------ILVKGPELLNKYVGESERAVRDLFQRAR 567
                   679**************776666444.........3445566666666666666666666554 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.47   2.6e+02       7      30 ..     223     259 ..     220     296 .. 0.77
   2 !   23.1   0.0   1.2e-07   6.7e-05       4     106 ..     512     608 ..     509     621 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.47
                 EEE--TTSSHHHHHHHHHHHTT-.............. CS
       AAA_2   7 lllgptgvGktelakalaellfv.............k 30 
                  + gp g+Gk  l k++a+ l v             k
  CCE26953.1 223 VISGPRGMGKRTLVKNIARQLGVplislntcfrdpeK 259
                 688****************999865555555544443 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 1.2e-07
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHH CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLL 100
                 + +ll gp g+Gkt++a+a+a+  ++    ++i +   ell     e+e+ v  l + +     a +  iv++DE+d + p + +    S++ V+++LL
  CCE26953.1 512 GGVLLWGPPGCGKTLIAQAVANDAQA----SFILVKGPELLNkyVGESERAVRDLFQRAR----ASKPCIVFFDEMDSVVPPRANLTTESGTRVVNALL 602
                 568999***************99985....9**********9333445555555555443....33455************98999999********** PP

                 HHHH-- CS
       AAA_2 101 qilegg 106
                   l+gg
  CCE26953.1 603 TELDGG 608
                 *99998 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.018       9.8       8      39 ..     222     244 ..     219     285 .. 0.86
   2 !   14.8   0.0   4.7e-05     0.026       5      46 ..     511     543 ..     507     566 .. 0.75
   3 ?    0.6   0.0       1.1   6.2e+02      82     105 ..     559     586 ..     548     626 .. 0.60
   4 ?   -1.2   0.0       4.2   2.3e+03      41      66 ..     638     663 ..     620     708 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.018
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeer 39 
                 +v+ G+ G+GK tl++++++ql         +
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQL---------G 244
                 5899***************998.........3 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4.7e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvt 46 
                 +g ++++G++G+GKT+ ++ +++ +         ++++++v+
  CCE26953.1 511 RGGVLLWGPPGCGKTLIAQAVANDA---------QASFILVK 543
                 566899*****************98.........44444444 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 1.1
      AAA_22  82 leqalrarav..ielliiDEaqhlr..s 105
                 +++ ++++++  + ++  DE++ +   +
  CCE26953.1 559 VRDLFQRARAskPCIVFFDEMDSVVppR 586
                 33333333334447999*****986541 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 4.2
      AAA_22  41 evvfvtlpsstsskdllrellralgl 66 
                 +++f++lp ++++ ++l+ + r+   
  CCE26953.1 638 RQIFIDLPTPSERVEILQTIYRNCCK 663
                 67888888888888888888877554 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00035      0.19       2      46 ..     226     271 ..     225     281 .. 0.77
   2 ?    7.2   0.0     0.012       6.3       2      23 ..     518     539 ..     517     572 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00035
                 E-TTSSHHHHHHHHHHHHTEEEEEHHHHHHH.HHHTTTSHSSHHHH CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsaGdllre.eakrgglakardem 46 
                 G+ G+GK t+++++++++g++ +s    +r+ e  ++++++a+d++
  CCE26953.1 226 GPRGMGKRTLVKNIARQLGVPLISLNTCFRDpEKLEKNMIEAFDAV 271
                 899*********************9999995133333445565555 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.012
                 E-TTSSHHHHHHHHHHHHTEEE CS
      AAA_17   2 GgPGsGKgtqceklvekygfth 23 
                 G+PG+GK+ +++ ++ + + ++
  CCE26953.1 518 GPPGCGKTLIAQAVANDAQASF 539
                 9*************98875443 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0    0.0006      0.32      49      90 ..     223     262 ..     220     287 .. 0.78
   2 !    8.3   0.0    0.0036         2      48      74 ..     514     540 ..     501     580 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0006
       Rad17  49 LisGPsGCgkstvvkvLskelgiklrewlnpvslkepdnqks 90 
                 +isGP G gk t vk ++++lg+ l+  ln + +++p+  ++
  CCE26953.1 223 VISGPRGMGKRTLVKNIARQLGVPLIS-LN-TCFRDPEKLEK 262
                 79********************99986.44.45677776554 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0036
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklr 74 
                 +L+ GP+GCgk+ + + ++     +++
  CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDAQASFI 540
                 6899********999999887766665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00073       0.4      20      46 ..     220     246 ..     198     252 .. 0.79
   2 !    8.5   0.0    0.0035       1.9      21      61 ..     513     553 ..     482     572 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00073
                 EEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgve 46 
                 + ++++G+ G+GK tlv+++a++lgv 
  CCE26953.1 220 TGVVISGPRGMGKRTLVKNIARQLGVP 246
                 34999*******************985 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0035
                 EEEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEEEE CS
        TsaE  21 vilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeYel 61 
                  +lL G+ G+GKT +++++a+  + +   vk P   l+++Y  
  CCE26953.1 513 GVLLWGPPGCGKTLIAQAVANDAQASfiLVKGP--ELLNKYVG 553
                 399******************999887778887..56677655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       2.4   1.3e+03      50      85 ..      75     111 ..      56     133 .. 0.78
   2 !    8.3   0.0    0.0048       2.6       2      27 ..     222     248 ..     221     258 .. 0.91
   3 !    9.3   0.0    0.0023       1.3       2      37 ..     514     554 ..     513     573 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.4
      AAA_28  50 edllafaervleeqleeeaaa.aankvlfcDrglldt 85 
                 ed  + +++++e++++++aa+ ++n  +++ r+++  
  CCE26953.1  75 EDSSDSEAALEEAEAATAAATgESNSGFLLNRQMVKL 111
                 4666677777788887777777899999999888765 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0048
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvv 27 
                 +vi+G+ + GK tl++++a++ g+p +
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQlGVPLI 248
                 8******************98898876 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0023
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvv..pEaareilee 37 
                 + + G++++GKT +++a a++    +  v  pE   +++ e
  CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDaqaSFILVkgPELLNKYVGE 554
                 6789***************7654444444577777666654 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.012       6.6      12      34 ..     220     242 ..     211     246 .. 0.86
   2 !   10.4   0.0    0.0013      0.72       6      68 ..     506     566 ..     504     609 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.012
                 SEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  12 ekvaivGenGaGKStLlkllagl 34 
                 + v+i G+ G GK tL+k +a++
  CCE26953.1 220 TGVVISGPRGMGKRTLVKNIARQ 242
                 5689****************987 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0013
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqep 68 
                 lk+++   v + G+ G+GK+ +++++a+  +  +  il++g +l ++   ++++ ++ l+q +
  CCE26953.1 506 LKFSPRGGVLLWGPPGCGKTLIAQAVANDAQ--ASFILVKGPELLNKYVGESERAVRDLFQRA 566
                 6677777899****************99875..678888888888878888888888888774 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.012       6.7       1      29 [.     222     248 ..     222     277 .. 0.86
   2 !    9.6   0.0    0.0024       1.3       1      22 [.     514     535 ..     514     581 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.012
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlr 29 
                 ++++G+ G GK tl k++++ l  gv l+
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQL--GVPLI 248
                 789*****************99..55544 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0024
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 +ll G+pG+GKt +a+++++  
  CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDA 535
                 7899*************98764 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0039       2.1       3      24 ..     222     243 ..     220     252 .. 0.91
   2 !    8.6   0.0    0.0029       1.6       3      25 ..     514     536 ..     513     540 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0039
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                 v++ G+ G+GK tL++ +a+++
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQL 243
                 79*****************987 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0029
                 EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawa 25 
                 v+l G++G+GKT  +q +a +++
  CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDAQ 536
                 6889**************99876 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00083      0.45       2      27 ..     222     244 ..     221     285 .. 0.91
   2 ?    5.3   0.0      0.03        16       2      32 ..     514     544 ..     513     553 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00083
                 EEEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssg 27 
                 v+i+Gp G+GK Tlvk+++++l   g
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQL---G 244
                 79*****************999...4 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.03
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgG 32 
                 v++ GppG GKt + + v++  + s + v+G
  CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDAQASFILVKG 544
                 6788**************9998877666666 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.039        21      51      84 ..     220     251 ..     212     267 .. 0.88
   2 !   11.1   0.0   0.00031      0.17      47      97 ..     507     556 ..     499     569 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.039
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvals 84 
                  +v+++Gp+g Gk  l   i+++lg  vp ++l+
  CCE26953.1 220 TGVVISGPRGMGKRTLVKNIARQLG--VPLISLN 251
                 5799********************9..7777766 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00031
                 XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  47 klaGr.avLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkkte 97 
                 k++ r +vLl Gp+g Gkt +a a++++      f+ ++g e+    v  +e
  CCE26953.1 507 KFSPRgGVLLWGPPGCGKTLIAQAVANDAQ--ASFILVKGPELLNKYVGESE 556
                 55555369******************9865..78999999999888777776 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0087       4.7      56      79 ..     222     245 ..     213     282 .. 0.78
   2 !    8.2   0.0    0.0022       1.2      55     114 ..     513     577 ..     504     630 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0087
      DUF815  56 vLLwGarGtGKSslvkallneyae 79 
                 v++ G rG+GK +lvk + +++  
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQLGV 245
                 7899*************9988755 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0022
      DUF815  55 nvLLwGarGtGKSslvkallneyaeeg..Lrlievekedlkelpklvellr...erperfilfvD 114
                  vLLwG  G+GK  + +a+ n+++++   ++  e+ ++ + e ++ v+ l    ++++ +i+f D
  CCE26953.1 513 GVLLWGPPGCGKTLIAQAVANDAQASFilVKGPELLNKYVGESERAVRDLFqraRASKPCIVFFD 577
                 69****************99998887633333455555555555555544311123345666666 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.032        18      23      43 ..     222     242 ..     213     245 .. 0.88
   2 !    9.0   0.0    0.0013      0.73      23      44 ..     514     535 ..     504     539 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.032
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 v ++G  G+GK tl+k+i ++
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQ 242
                 789***************886 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0013
                 EEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC  23 valvGmgGvGKttlakqilnks 44 
                 v l G +G+GKt +a+ + n+ 
  CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDA 535
                 6789***************994 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.1e-05     0.012     110     136 ..     507     533 ..     496     539 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.1e-05
   Parvo_NS1 110 qlgkrntvwfyGpantGktnlaeaIak 136
                 ++++r+ v+++Gp+ +Gkt +a+a a+
  CCE26953.1 507 KFSPRGGVLLWGPPGCGKTLIAQAVAN 533
                 789*********************997 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.38   2.1e+02      49      70 ..     221     242 ..     216     251 .. 0.86
   2 !   11.5   0.0   0.00033      0.18      49      71 ..     513     535 ..     506     554 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.38
   IstB_IS21  49 nivllGpsGvGKshlaialgve 70 
                 ++v+ Gp G+GK  l   ++++
  CCE26953.1 221 GVVISGPRGMGKRTLVKNIARQ 242
                 689*********9998877765 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00033
   IstB_IS21  49 nivllGpsGvGKshlaialgvea 71 
                 +++l Gp+G GK+ +a a++ +a
  CCE26953.1 513 GVLLWGPPGCGKTLIAQAVANDA 535
                 689****************9987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.063        34      23      39 ..     221     236 ..     213     243 .. 0.87
   2 !    8.1   0.0     0.004       2.1      15      41 ..     504     530 ..     497     535 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.063
      AAA_29  23 gatlltGpsGsGKSTll 39 
                 g ++++Gp G GK Tl+
  CCE26953.1 221 G-VVISGPRGMGKRTLV 236
                 4.78***********98 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.004
      AAA_29  15 htieidlkgatlltGpsGsGKSTllDA 41 
                 ++++++++g +ll Gp G GK+ +  A
  CCE26953.1 504 EELKFSPRGGVLLWGPPGCGKTLIAQA 530
                 4689999**************866555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.3   7.2e+02      25      44 ..     222     241 ..     219     266 .. 0.87
   2 ?   12.3   0.0   0.00015     0.082      25      42 ..     514     531 ..     506     535 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.3
  Mg_chelatase  25 lllvGppGsGKtmlakrlps 44 
                   +++ Gp G GK  l k ++ 
    CCE26953.1 222 VVISGPRGMGKRTLVKNIAR 241
                   6789********99998865 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00015
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                   +ll GppG+GKt++a+++
    CCE26953.1 514 VLLWGPPGCGKTLIAQAV 531
                   89*************987 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0011      0.61       2      34 ..     223     255 ..     222     268 .. 0.90
   2 ?    2.6   0.0      0.17        94       4      27 ..     517     540 ..     514     542 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
                     EEE-STTSSHHHHHHHHHHHHT-EEEEHHHHHH CS
  Cytidylate_kin   2 aiDGPagsGKssvaralaeklglkyldtgalYR 34 
                      i GP g GK ++ + +a++lg+ +++  + +R
      CCE26953.1 223 VISGPRGMGKRTLVKNIARQLGVPLISLNTCFR 255
                     689********************9998777666 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.17
                     E-STTSSHHHHHHHHHHHHT-EEE CS
  Cytidylate_kin   4 DGPagsGKssvaralaeklglkyl 27 
                      GP g GK  +a+a+a+  +++++
      CCE26953.1 517 WGPPGCGKTLIAQAVANDAQASFI 540
                     59***************9998876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.13        69      36      58 ..     222     244 ..     216     278 .. 0.85
   2 ?    8.7   0.0    0.0021       1.1      35      58 ..     513     536 ..     505     544 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.13
       AAA_7  36 vllvGptGtGKtviikdllkkld 58 
                 v++ Gp G GK +++k++ ++l 
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQLG 244
                 7899*************999986 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0021
       AAA_7  35 pvllvGptGtGKtviikdllkkld 58 
                  vll Gp G+GKt+i++ + +  +
  CCE26953.1 513 GVLLWGPPGCGKTLIAQAVANDAQ 536
                 69***************9988776 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.028        15      23      44 ..     222     243 ..     217     253 .. 0.91
   2 ?    5.4   0.0     0.028        15      21      45 ..     512     535 ..     502     570 .. 0.77
   3 ?   -2.1   0.0       5.6     3e+03     103     131 ..     556     583 ..     529     603 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.028
    ATPase_2  23 yfiYGpegsGKtaLlkeiienl 44 
                 ++i Gp+g GK +L+k+i+ +l
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQL 243
                 799**************98765 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.028
    ATPase_2  21 eiyfiYGpegsGKtaLlkeiienle 45 
                   ++++Gp g+GKt  + +++ n  
  CCE26953.1 512 GGVLLWGPPGCGKTL-IAQAVANDA 535
                 557899*******95.555555544 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 5.6
    ATPase_2 103 fkaielllekikkkgkkiiiiiDelqkli 131
                 ++a+ +l++  + + k  i+++De+  ++
  CCE26953.1 556 ERAVRDLFQRARAS-KPCIVFFDEMDSVV 583
                 44444444443333.33899999998766 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.024        13       1      28 [.     228     255 ..     228     270 .. 0.82
   2 ?    5.2   0.0     0.038        21       1      21 [.     520     540 ..     520     557 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.024
                 TTSSHHHHHHHHHHHHTSEEEEHHHHHH CS
         SKI   1 mGaGKstvGkllAkklglefiDlDelie 28 
                 +G GK t+ k +A++lg+++i l + + 
  CCE26953.1 228 RGMGKRTLVKNIARQLGVPLISLNTCFR 255
                 699*****************99888775 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.038
                 TTSSHHHHHHHHHHHHTSEEE CS
         SKI   1 mGaGKstvGkllAkklglefi 21 
                 +G+GK+ +++++A+  + +fi
  CCE26953.1 520 PGCGKTLIAQAVANDAQASFI 540
                 6*************9999987 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0       0.1        56      23      58 ..     220     252 ..     209     266 .. 0.74
   2 ?    7.7   0.0    0.0049       2.6      25      47 ..     514     536 ..     503     552 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.1
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEET CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavnc 58 
                      + v+i G  G GK +l + i ++      p++++n 
       CCE26953.1 220 TGVVISGPRGMGKRTLVKNIARQL---GVPLISLNT 252
                      5699***********999987654...356666665 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0049
                      EEEECSTTSSHHHHHHHHHHHST CS
  Sigma54_activat  25 vlitGesGtGKellaraiheask 47 
                      vl+ G  G+GK+l+a+a+ +  +
       CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDAQ 536
                      9****************977544 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.28   1.5e+02      17      38 ..     222     243 ..     215     287 .. 0.89
   2 ?    8.7   0.0    0.0022       1.2      17      76 ..     514     576 ..     510     607 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.28
                  EEEEESTTSSHHHHHHHHHHHS CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  17 tlipgafgvGktvisqslskqs 38 
                  ++i g +g+Gk ++++++++q 
   CCE26953.1 222 VVISGPRGMGKRTLVKNIARQL 243
                  5799***************985 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0022
                  EEEEESTTSSHHHHHHHHHHHSSTSSEEEEEE........ESEEHHHHHHHHHHCHHSSGGGGEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  17 tlipgafgvGktvisqslskqsnsddaiiyvg........iGergnevaevleefpegtimkrtvlva 76 
                  +l+ g  g+Gkt i+q++++ ++++   i+v         +Ge ++ v++++++ +     k +++++
   CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDAQAS--FILVKgpellnkyVGESERAVRDLFQRARA---SKPCIVFF 576
                  5678999**************8655..444444777777788888888887666543...44445555 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.42   2.3e+02       2      25 ..     222     245 ..     221     252 .. 0.88
   2 ?   -2.5   0.0       8.1   4.4e+03     101     114 ..     321     334 ..     278     337 .. 0.66
   3 ?    7.2   0.0    0.0082       4.5       2      30 ..     514     542 ..     513     555 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.42
       AAA_3   2 vllegvPGlaktllvkalakaldl 25 
                 v++ g  G++k +lvk++a++l++
  CCE26953.1 222 VVISGPRGMGKRTLVKNIARQLGV 245
                 6789999*************9986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 8.1
       AAA_3 101 pepflvlatqnPie 114
                  ++++ +at n i+
  CCE26953.1 321 ASNYFAIATTNNID 334
                 35788999999887 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0082
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vll g PG +ktl+++a+a+  +++f  +
  CCE26953.1 514 VLLWGPPGCGKTLIAQAVANDAQASFILV 542
                 7999****************999988655 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   1.4       2.2   1.2e+03     137     175 ..      88     140 ..      13     179 .. 0.57
   2 ?   -0.8   0.0       1.9     1e+03      21      41 ..     223     243 ..     216     279 .. 0.82
   3 ?    8.1   0.0    0.0037         2      19      41 ..     513     535 ..     498     574 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.2
      AAA_11 137 akelrafeeeeek........................eklkkskekskskleqerrklkkerk 175
                 ++                                   ++++ s ++s++k  +++r l+++++
  CCE26953.1  88 EA----------AtaaatgesnsgfllnrqmvklwhrDNSNASTTNSAEKSPAKKRRLQEASE 140
                 11..........012233334556666666666655555555555555555555555554444 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.9
      AAA_11  21 liqGPPGtgKTktivellsql 41 
                 +i+GP G gK + +  + +ql
  CCE26953.1 223 VISGPRGMGKRTLVKNIARQL 243
                 79********99999999998 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0037
      AAA_11  19 itliqGPPGtgKTktivellsql 41 
                  +l++GPPG+gKT    ++ + +
  CCE26953.1 513 GVLLWGPPGCGKTLIAQAVANDA 535
                 479**********8877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 4963.11
//
Query:       CCE26954.1  [L=202]
Description: uncharacterized protein CPUR_00423 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-33  114.7   9.1      4e-33  114.4   9.1    1.1  1  Snf7      Snf7
  ------ inclusion threshold ------
       0.39   11.5   2.9          2    9.2   0.0    2.2  2  DUF2203   Uncharacterized conserved protein (DUF2203)


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   9.1   4.5e-37     4e-33       2     172 ..      14     177 ..      13     178 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 4.5e-37
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        Snf7   2 airsLrkaerkldkkqeslekkikkleaelkklakkgnkdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkamnkk 100
                 ai++++ +++kl+++q++++    k+   +k++ + g+k+rall+L++kk++e +l+++d+ql +le+    +e++  +k+v+ +++qg+k++ a++ +
  CCE26954.1  14 AILDMKSQRDKLHQYQRRITVLTDKETDIAKQMLARGDKKRALLALRRKKYQETLLSKTDAQLEQLEKLTSNVEFALIQKDVVFGLQQGTKVLEAIHAE 112
                 7999*********************99999********************************************************************* PP

                 TC.CHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-GGTTHHHHHHHHHHHHHHHHHCSH.HHHHHHHTXXXST CS
        Snf7 101 vd.idkidklmdeiedqmekaeeisEalsrslddadeedEeeleaeLdaLeqelgdeelldesvklpevPsee 172
                 +  ++ ++klm e+++++++++++s++l+ ++   ++ dEe++e+eL+aL++ l + +    + +lp+vP+++
  CCE26954.1 113 MGgLEHVEKLMGETAEAIAYQQQVSDMLGGQI---SARDEEDVEEELEALQAGLSE-Q----GHQLPSVPNAH 177
                 *559****************************...89***************9444.3....79******987 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.0     0.036   3.2e+02      20      72 ..      23      82 ..       9      91 .. 0.50
   2 ?    9.2   0.0   0.00022         2       2      76 ..      96     170 ..      95     179 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.036
     DUF2203 20 eelralrkeleeleeeleeakaeaekse.......aaeleaeleeleaeieelveeieel 72
                ++l + +++++ l ++ +++ +++ +++       a ++++  e+l ++ ++ +e++e+l
  CCE26954.1 23 DKLHQYQRRITVLTDKETDIAKQMLARGdkkrallALRRKKYQETLLSKTDAQLEQLEKL 82
                334444444444333333333222222244445555666666666666666666666655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00022
     DUF2203   2 lFtleeAnalLpllkelleelralrkeleeleeeleeakaeaekseaaeleaeleeleaeieelveeieelGvev 76 
                 +F l++ +++L  ++  +  l +++k + e++e+++ +++ +++ + +  ++++e +e+e+e+l + ++e G ++
  CCE26954.1  96 VFGLQQGTKVLEAIHAEMGGLEHVEKLMGETAEAIAYQQQVSDMLGGQISARDEEDVEEELEALQAGLSEQGHQL 170
                 6999*********************************99999999988888888889999999998888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1283  (0.07156); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1510.90
//
Query:       CCE26955.1  [L=448]
Description: probable beta-succinyl CoA synthetase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-74  248.1   0.7    7.1e-74  247.7   0.2    1.4  2  ATP-grasp_2  ATP-grasp domain
    5.4e-25   88.0   0.8    9.8e-25   87.2   0.8    1.4  1  Ligase_CoA   CoA-ligase
    3.9e-05   23.2   0.0    9.4e-05   22.0   0.0    1.6  1  ATP-grasp_5  ATP-grasp domain
     0.0024   17.6   0.5       0.21   11.4   0.1    2.5  2  GARS_A       Phosphoribosylglycinamide synthetase, ATP-grasp 
  ------ inclusion threshold ------
      0.076   13.3   0.1       0.35   11.2   0.0    2.2  2  OKR_DC_1_N   Orn/Lys/Arg decarboxylase, N-terminal domain


Domain annotation for each model (and alignments):
>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.7   0.2     2e-77   7.1e-74       2     201 ..      39     246 ..      38     247 .. 0.98
   2 ?   -3.6   0.0       1.9   6.8e+03     153     182 ..     395     424 ..     388     437 .. 0.51

  Alignments for each domain:
  == domain 1  score: 247.7 bits;  conditional E-value: 2e-77
                  E-HHHHHHHHHCTT----SEEEESSHHHHHHHH.HHHTSSSEEEEE--SSSTCCCT.......TCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EE CS
  ATP-grasp_2   2 lhEyqakeilakygvkvpegevaesaeeaeeaa.kklgekelvvKaQvlaGGRGKa.......gGvklvkskeeakeaakellgkelvtkqtgkeGkk 91 
                  +hEy + ++l++ygv vp+g+va++a+ea+++a +++g++++v+KaQvlaGGRGK+       gGv++++s++ea+++a++++g++l+tkqtg+ G+ 
   CCE26955.1  39 IHEYLSADLLRQYGVGVPKGAVARNAREAKDVAmNHIGTEDMVIKAQVLAGGRGKGtfdnglkGGVRVIYSPHEAEMFAEQMIGHKLITKQTGAGGRL 136
                  8****************************9987267************************************************************** PP

                  E--EEEEE---ECEEEEEEEEEETTTTEEEEEEESSTTS-HHHHHHH-GGGEEEEEEBTTTB--HHHHHHHHHHCT--CHHHHHHHHHHHHHHHHHHH CS
  ATP-grasp_2  92 vekvlveealdikkElYlsivlDraskkvvviaSseGGvdiEevaakkPekiikvaidpakglkeeqareiakklglekelvkkaakiikklyklfve 189
                  +++v+++e+   ++E+Yl+i++Dr s+++v++ Ss+GG+diE+va+++P++i  ++id+++g+++e ar ia+klg++++++++a+++i+klyk+f+e
   CCE26955.1 137 CNAVYICERKFARREFYLAILMDRGSQSPVIVSSSQGGMDIETVAKESPDAINTTHIDINVGVTDEIARGIATKLGFSEQCIEDAKDTIQKLYKIFTE 234
                  ************************************************************************************************** PP

                  TTEEEEEEEEEE CS
  ATP-grasp_2 190 ldatlvEiNPLv 201
                  +d t++EiNPL+
   CCE26955.1 235 RDSTQIEINPLS 246
                  **********97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.9
                  B--HHHHHHHHHHCT--CHHHHHHHHHHHH CS
  ATP-grasp_2 153 glkeeqareiakklglekelvkkaakiikk 182
                  g + e a++++++ g++  ++++++++ +k
   CCE26955.1 395 GTNVERAHQLITESGMKIFCIDDLQSAAEK 424
                  455555556666666555444433333333 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.8   2.7e-28   9.8e-25       1     152 [.     306     425 ..     306     426 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 2.7e-28
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHH CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkai 99 
                 lvnG++La+++md+ik++              g+++++++d+G++a+          p ++ ea++ +++d +v +i+++i++G+++++ +a +l+k++
  CCE26955.1 306 LVNGAGLAMATMDIIKLN--------------GGQPANFLDVGGGAT----------PAAIQEAFELITSDAKVTAIFVNIFGGIVRCDHIATGLIKTV 380
                 79****************..............***************..........9***************************************** PP

                 HHTT...--S-EEEEEECTTHH.....HHHHHHHTTTSSEEE-SSHHHHHHHH CS
  Ligase_CoA 100 keakaegrelpvvarvaGteadpqelseqakaleeagveiasskaqalraaka 152
                 ++++    ++p++ar++Gt+++      + + ++e+g++i   ++ +++a+k+
  CCE26955.1 381 ENLN---LKIPIIARLQGTNVE-----RAHQLITESGMKIFCIDDLQSAAEKS 425
                 ***8...***************.....999***********999999998876 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.6e-08   9.4e-05       6     219 ..      35     259 ..      30     261 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.6e-08
  ATP-grasp_5   6 grtlLteaeakelleaygipvvetrlassaeeaveaaeei.gyp.vvlKivs......pdilhKtdvgGvrlnlkdaeevraaaeeiler.vkekspe 94 
                  +     e+ +++ll++yg+ v++  +a++a ea ++a++  g   +v+K ++      ++       gGvr+ + +++e +  ae+++ + + +k+ +
   CCE26955.1  35 RALSIHEYLSADLLRQYGVGVPKGAVARNAREAKDVAMNHiGTEdMVIKAQVlaggrgKGTFDNGLKGGVRV-IYSPHEAEMFAEQMIGHkLITKQTG 131
                  44456788899************************9987546667****999766666667788899*****.************9986524444545 PP

  ATP-grasp_5  95 ariegvl.Vqemakr.ggrElivgvteDp.vFGpvil.fGlGGtavevlkdvavalpplnstlareliertkaskllkgvrgekkadlaaleellvrl 188
                  a  + +  V   +++ + rE+ + +  D  +  pvi+   +GG+ +e +++ + +    ++ +++  +    a  ++++   + +  ++  ++++++l
   CCE26955.1 132 AGGRLCNaVYICERKfARREFYLAILMDRgSQSPVIVsSSQGGMDIETVAKESPDAINTTHIDINVGVTDEIARGIATKLGFS-EQCIEDAKDTIQKL 228
                  44443332333333248888888887776245677661568*************99999999999999998899999998888.889*********** PP

  ATP-grasp_5 189 sqLvvdlpeIreldinPllvee.egvvalDar 219
                   ++ ++    ++++inPl  ++ ++v+++Da+
   CCE26955.1 229 YKIFTE-RDSTQIEINPLSETSdHQVLCMDAK 259
                  *****9.66799******99884559999997 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   5.7e-05      0.21       7      53 ..      45      92 ..      41     166 .. 0.83
   2 ?    4.0   0.0     0.011        38      14      63 ..     386     435 ..     378     441 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.7e-05
                HHHHHHTT--B--EEEESSHHHHHHH.HHHHSSSEEEEEESC-GGGT- CS
      GARS_A  7 kdllkkagiptaeyeaftdpeeakey.ieeatakalVvKadglaagKg 53
                 dll+++g+  ++ ++  ++ eak++ +++ +++ +V+Ka+ la+g+g
  CCE26955.1 45 ADLLRQYGVGVPKGAVARNAREAKDVaMNHIGTEDMVIKAQVLAGGRG 92
                58999**************9999886267788999**********987 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.011
                 T--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHH CS
      GARS_A  14 giptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeea 63 
                 +ip+    + t++e+a++ i+e + k++ + +   aa K v + k ++ a
  CCE26955.1 386 KIPIIARLQGTNVERAHQLITESGMKIFCIDDLQSAAEKSVQLSKVVKMA 435
                 455555556689*****************************998877766 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.9   6.8e+03      65     105 ..     165     208 ..     151     211 .. 0.56
   2 ?   11.2   0.0   9.7e-05      0.35      26      69 ..     342     392 ..     337     417 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.9
  OKR_DC_1_N  65 PvFllaetr..tsedvpadvlreid.gfielledtpefiarqie 105
                 Pv + +++   + e+v  +  + i+   i+++ + +++iar i 
  CCE26955.1 165 PVIVSSSQGgmDIETVAKESPDAINtTHIDINVGVTDEIARGIA 208
                 55555544444455555555555443456666666777777665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 9.7e-05
  OKR_DC_1_N  26 tdDllsvieqnsriaavvlsvd.......deaaelldeirernedlPvFll 69 
                  +++ ++i +++++ a+ +++        ++a++l++ ++++n ++P+ + 
  CCE26955.1 342 IQEAFELITSDAKVTAIFVNIFggivrcdHIATGLIKTVENLNLKIPIIAR 392
                 67788888888888888888888888888*******************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3510.87
//
Query:       CCE26956.1  [L=228]
Description: related to Fe/S cluster assembly protein ISA1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-18   66.7   0.0    2.5e-18   66.3   0.0    1.2  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   1.4e-22   2.5e-18       3     111 .]     125     224 ..     123     224 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 1.4e-22
                  EEE-HHHHHHHHHHHHCTTEC.EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEEEE CS
  Fe-S_biosyn   3 itlteaAaeklkkllaedkke.lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLksd 99 
                  ++lt+aA+e+l+ +l++ + + + ++v++ g       Cs g  y+l++vd++   +de++e++g+kv+++s++l  +  g ++d+ ed+ + ++ + 
   CCE26956.1 125 MKLTPAAVEQLRMMLDQPEPKlIKVGVRNRG-------CS-GLAYHLEYVDKP-GTFDETVEQDGVKVLIDSKALFSI-IGSEMDWAEDKLNQKFVFR 212
                  689**************88888*********.......**.************.************************.9****************** PP

                  TCCEEEEEEEEE CS
  Fe-S_biosyn 100 ngilddnvglgk 111
                  n+++++++g+g+
   CCE26956.1 213 NPNIKEQCGCGE 224
                  **********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1757.01
//
Query:       CCE26957.1  [L=1221]
Description: related to Ras guanine-nucleotide exchange protein Cdc25p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-52  176.7   0.0    8.4e-52  175.9   0.0    1.4  1  RasGEF    RasGEF domain
    2.3e-15   56.7   0.0    6.3e-15   55.3   0.0    1.8  1  RasGEF_N  RasGEF N-terminal motif
    1.4e-06   28.1   0.1    2.7e-06   27.1   0.1    1.6  1  SH3_9     Variant SH3 domain
    4.7e-05   22.9   0.0    9.3e-05   22.0   0.0    1.5  1  SH3_1     SH3 domain
     0.0066   16.1   0.0       0.02   14.6   0.0    1.8  1  SH3_2     Variant SH3 domain


Domain annotation for each model (and alignments):
>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   0.0   2.3e-55   8.4e-52       1     176 [.     931    1121 ..     931    1122 .. 0.96

  Alignments for each domain:
  == domain 1  score: 175.9 bits;  conditional E-value: 2.3e-55
      RasGEF    1 elAeqltlieaelfskikpeellgsawsked..rspnveaviarfnrlsnwvaseilseeslkkRakviekfikiakecrklnNfnslmailsaLqs 95  
                  elA+qlt+ ++ +f++i peell s+w+k+   ++pnv+a+ a ++ lsn+va++il+++++kkRa vi+++ik+a++c +l+N+++lmai++ L+s
  CCE26957.1  931 ELARQLTIKQMSIFCSIMPEELLASQWMKKGgvDAPNVKAMSALSTDLSNMVAETILQHPEIKKRALVIKQWIKVAQQCLDLHNYDGLMAIICSLNS 1027
                  79***************************998777************************************************************** PP

      RasGEF   96 spvsrLkktweavskkslktleeleelmspennfknyrealkssasskpciPflglyltdltfieegnpdtl...............egk.iNfeKr 176 
                  s +srL+ktw+avs +++++l++l+e+++p +n k +r++l+++    pc+Pflg+yltdltf++ gnp t+                 + +Nf+K+
  CCE26957.1 1028 STISRLRKTWDAVSARRKDILRRLQEIVEPAQNNKVLRTRLHDH--VPPCLPFLGMYLTDLTFVDIGNPATKqmsmgtdceedgsggL-TvVNFDKH 1121
                  ********************************************..7889*******************9999999999999999844.45999997 PP

>> RasGEF_N  RasGEF N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   1.8e-18   6.3e-15       1      99 [.     752     839 ..     752     847 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 1.8e-18
    RasGEF_N   1 qvkagtlekLierLtsk.rlldddfletFLltyrsFttpaeLlekLieryeinppnnlesdesnswnsksssnirlrvlsvlkewvenhyydfsddkal 98 
                 qv +g+l +L+erLt + +  d +f++tF lt+r F++p +L e+L++r+++ ++ ++ ++           ++rlrv +++k w+e+h+ d +d  a 
  CCE26957.1 752 QVTGGSLPALVERLTTHeSTPDATFVSTFYLTFRLFCRPLKLAEALMDRFDYVEEFQHMAG-----------PVRLRVYNAFKGWLESHWRDQTDREA- 838
                 6899*************666688***************************98888888888...........8******************9988864. PP

    RasGEF_N  99 l 99 
                 l
  CCE26957.1 839 L 839
                 4 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   7.7e-10   2.7e-06      12      47 ..      90     127 ..      74     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 7.7e-10
       SH3_9  12 eLsLqrGDvitvieesedgWlegsl..tGrtGlvPany 47 
                  LsL++GDv++v + + +gW +g+l  +G +G++P ny
  CCE26957.1  90 TLSLEEGDVVLVHSVHTNGWADGTLlvSGARGWLPTNY 127
                 7************999********779*********** PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.6e-08   9.3e-05      11      48 .]      88     125 ..      73     125 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.6e-08
                 TTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1  11 sdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 s  Ls+++GDv+ v++ + +gW +g l  +g +G+ P+
  CCE26957.1  88 SVTLSLEEGDVVLVHSVHTNGWADGTLLVSGARGWLPT 125
                 557*********************************95 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.5e-06      0.02      16      55 ..      91     129 ..      56     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.5e-06
                 --B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCGEE CS
       SH3_2  16 LsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPsslve 55 
                 Ls+++Gdv+ v    s   +gw  g+    G +G+ P++++e
  CCE26957.1  91 LSLEEGDVVLVH---SVHTNGWADGTLlvSGARGWLPTNYCE 129
                 9**********9...99999*****9999**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 7925.38
//
Query:       CCE26958.1  [L=632]
Description: uncharacterized protein CPUR_00430 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-87  290.8   0.3    1.4e-86  290.0   0.3    1.4  1  DUF1741   Domain of unknown function (DUF1741)
  ------ inclusion threshold ------
      0.022   14.7   0.5      0.056   13.4   0.0    1.9  2  Sec7_N    Guanine nucleotide exchange factor in Golgi transpo


Domain annotation for each model (and alignments):
>> DUF1741  Domain of unknown function (DUF1741)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.0   0.3   1.5e-90   1.4e-86       1     231 [.     407     624 ..     407     626 .. 0.97

  Alignments for each domain:
  == domain 1  score: 290.0 bits;  conditional E-value: 1.5e-90
     DUF1741   1 rvlaavilDllvdfinhnLrkrldvelytlalgillrllsylkrskvRLayhWselwraLlslvrflttyasdlkskpqidtlldslvnllalfisaGd 99 
                 rvla + lD ++d+inhnLr+rldv+lyt +lgillr++syl+rsk+RL+yhW e++r+Llslvrfl+ty+sdlk+ ++i+tlld++vnllal++saG+
  CCE26958.1 407 RVLAVSFLDCMIDGINHNLRRRLDVSLYTVCLGILLRIISYLSRSKTRLTYHWPEFFRSLLSLVRFLATYTSDLKNLTHINTLLDHVVNLLALSLSAGE 505
                 789************************************************************************************************ PP

     DUF1741 100 tfLpdpasYddLfYklvetgevltkfrdlyklalrasvtteseakesakkatnsidnlisvsthfkelleekkakk...kkkeltpeqvlevIkqgYet 195
                 +fLp+pa+YddLfYk+ve+g+vlt+f++ y+l+               ++++nsid+lisvsth+k+ll e   ++   k ++lt++qv+e+IkqgYet
  CCE26958.1 506 AFLPTPAAYDDLFYKIVESGDVLTRFKKNYALQ---------------NRKSNSIDTLISVSTHYKQLLPEGGGSNaniKPNNLTTQQVTEIIKQGYET 589
                 ********************************9...............6889*****************887776667899****************** PP

     DUF1741 196 LslkalqegLdkwekyreedektflkkivrvaveda 231
                 Ls++a +egLdkw+++re+de+t+lk+++r+ v d+
  CCE26958.1 590 LSIQA-KEGLDKWDNFREADERTLLKRMARASVGDV 624
                 ****7.***************************997 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.2e-06     0.056       4     103 ..      97     218 ..      94     245 .. 0.84
   2 ?   -2.9   0.1      0.61   5.4e+03      85      97 ..     437     449 ..     417     499 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.2e-06
      Sec7_N   4 DaflvfrdLcklinsaks.kpkflslaersktfsLeLlesvlsnhgdvfr...........................khpellqllkqklcplLlknls 74 
                 D +++f   c l  s+k   p   s + ++ + +L+ + +v++++++ f+                           + + +++l++ +l+p+++k+++
  CCE26958.1  97 DSLSIFF-SCLL--SKKYpHP---SSDIITILAGLDHIDAVFTDFTSTFEsiirnggslptrhkaikvllaitagayQATLFTYLIQRDLFPAVMKFVQ 189
                 6666663.4677..4552123...57899999********************************************999999***************** PP

      Sec7_N  75 espsfpvferslrivllLlkkfrseLktE 103
                 +s+++  ++ ++ ++ +L ++ + e+++ 
  CCE26958.1 190 DSETPGQIMEAFTLLGILANYNKFEFQNP 218
                 99999999999999999988877777665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.61
      Sec7_N  85 slrivllLlkkfr 97 
                 +l i+l ++++++
  CCE26958.1 437 CLGILLRIISYLS 449
                 4444444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.53
# Mc/sec: 3607.25
//
Query:       CCE26959.1  [L=541]
Description: NAAP-1 amino acid permease NAAP1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-151  505.8  38.3   1.3e-151  505.5  38.3    1.0  1  AA_permease    Amino acid permease
    2.9e-44  151.6  41.8    3.8e-44  151.2  41.8    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.5  38.3  1.5e-155  1.3e-151       1     473 [.      37     499 ..      37     504 .. 0.98

  Alignments for each domain:
  == domain 1  score: 505.5 bits;  conditional E-value: 1.5e-155
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+ +ia+gg iG+g+fvg+g++ls++Gp+++++ +l++g+++f v+++lge+a+++p+sggfyty+srf++p++Gf++G+ny+f+w++vl+lelt+++
   CCE26959.1  37 HLNMIAIGGSIGAGFFVGSGSALSKGGPGTLFVDFLIIGIMMFNVVYALGELAVMYPVSGGFYTYSSRFIDPSWGFAMGWNYVFQWAAVLPLELTVCG 134
                  889*********************************************************************************************** PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.....gfrflgdngsifknnlppgfa 191
                   +iq+w  ++d++   v++avfl++++iinl+g+ +y+e ef+++++k+ a ++f+i+ ++l+ gg+p+ g+     g+r+++d+g+     + +g  
   CCE26959.1 135 LTIQYW--NEDIS-VGVWIAVFLAAIVIINLFGALGYAEEEFVASIFKLSATVIFMIIAFVLVLGGGPKSGRyneywGARYWYDPGA-----FKNG-- 222
                  ******..*****.*************************************************************************.....****.. PP

  AA_permease 192 keeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa...aspfvifikesgvs 286
                        fk+f++vfv+++f+f+G+elv+++a+E+k+P k++P ai+qv++ritifY+l+l+++gll++ +d+ ll+dsa a   aspfv+++k++g++
   CCE26959.1 223 ------FKGFCAVFVTAAFSFSGTELVGLAAAEAKNPVKALPSAIKQVFWRITIFYILGLFFVGLLINPDDPALLSDSAYAdvkASPFVLVGKYAGLK 314
                  ......******************************************************************************************** PP

  AA_permease 287 vlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwllii 384
                  ++ +++n+vil+++ls+++s++y +sR+l++la++g+aPk +++++k+g+Pl a+++ +++++++++  + + a  +vf++lla+s+l++l++w++i+
   CCE26959.1 315 GFDHFMNIVILASVLSIGVSGVYGGSRTLTALAQQGYAPKLFTYIDKSGRPLPAVIAILLCGFIGFVSLNNSGA--VVFDWLLALSGLAALFTWGSIC 410
                  ******************************************************************66666666..********************** PP

  AA_permease 385 lsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknk 473
                  l+++rfRka+ky+g+ ++e++fka ++++g++l+l+++i++l++++++a+++ ++  +   ++ f+++yl+++++l ++++++l+++++
   CCE26959.1 411 LAHIRFRKAWKYHGHTLDEIPFKAIGGVYGSWLGLILCILVLIAQFYTAIVAPPGKSGMGTVEGFFKSYLGFPVVLFFWLVGYLWKRTG 499
                  *************************************************************************************9986 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2  41.8   4.2e-48   3.8e-44       8     408 ..      40     465 ..      34     488 .. 0.82

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 4.2e-48
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    +++ig  ig+g+fv +  ++ +ggp ++++ +++++i+++ v++++ El+ + p sgG y+y+++++ + ++f ++w ++f++++vl++ l+v++ 
     CCE26959.1  40 MIAIGGSIGAGFFVGSgsALSKGGPGTLFVDFLIIGIMMFNVVYALGELAVMYPVSGGFYTYSSRFIDPSWGFAMGWNYVFQWAAVLPLELTVCGL 135
                    799************99544448888777777777777789*********99******************************************** PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdt.......ffpn 185
                    ++++ +++d+      + + ++++l+ +++in++g  ++a   ++  i+k+  ++i++ii+ +++++gg  s                     f+n
     CCE26959.1 136 TIQY-WNEDI-----SVGVWIAVFLAAIVIINLFGALGYAEEEFVASIFKLSATVIFMIIAFVLVLGGGPKSGRyneywG----ArywydpgAFKN 221
                    ****.77665.....566677889999************************88877777666666655555544755540....25556677999* PP

  AA_permease_2 186 gwpgvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsv......aalffeavggkvva 273
                    g +g+ +++ ++++sf+G e +   + e+k+  k +p ai  ++  ++++y+l  +++   +++d  a ls++ ++      + l+ + +g k + 
     CCE26959.1 222 GFKGFCAVFVTAAFSFSGTELVGLAAAEAKNpvKALPSAIKQVFWRITIFYILGLFFVGLLINPDDPALLSDSAYAdvkaspFVLVGKYAGLKGFD 317
                    *******************************999**************************99999998888866545566669999999999**** PP

  AA_permease_2 274 iivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgliisylllii 367
                    ++++i+i  s+l ++ + v+g sr+l ala++g+ P+ f  ++k g+p+ a+i ++++ +i + ++ l++  +  +++ll++s l++++ ++ + +
     CCE26959.1 318 HFMNIVILASVLSIGVSGVYGGSRTLTALAQQGYAPKLFTYIDKSGRPLPAVIAILLCGFIGF-VS-LNNsgAVVFDWLLALSGLAALFTWGSICL 411
                    ***********************************************************7765.44.44447999*******************99 PP

  AA_permease_2 368 galilrkkrphlkr.............pgkilvaiigalfllfllvalffppkg 408
                    + +  rk  +  +              +g +l  i+ +l+l+  ++++++ p g
     CCE26959.1 412 AHIRFRKAWKYHGHtldeipfkaiggvYGSWLGLILCILVLIAQFYTAIVAPPG 465
                    999998886633223556665454443333422222233333333444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3954.61
//
Query:       CCE26960.1  [L=140]
Description: uncharacterized protein CPUR_00432 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-42  144.6   1.6    4.5e-42  144.3   1.6    1.1  1  S36_mt    Ribosomal protein S36, mitochondrial


Domain annotation for each model (and alignments):
>> S36_mt  Ribosomal protein S36, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.3   1.6   2.5e-46   4.5e-42       1     115 []      17     136 ..      17     136 .. 0.98

  Alignments for each domain:
  == domain 1  score: 144.3 bits;  conditional E-value: 2.5e-46
      S36_mt   1 tPmIkFlGkrtiPasvdhtpkpHPaspsgslPe.............sksfasyreklqqhgplkkvpyksskkskskseggiggasgsslgsvepkkge 86 
                 tP+IkF+G+rtiP+s+dhtpkpHPasp+g+lPe             ++sf+syr+++qqhgpl+k++++        +e+g+gg+sgs+lgs++p++g+
  CCE26960.1  17 TPLIKFIGPRTIPSSIDHTPKPHPASPTGQLPEsfadsanrssasrHPSFSSYRDHAQQHGPLQKSIRS--------VEAGVGGSSGSQLGSITPPSGV 107
                 7*****************************************************************887........689******************* PP

      S36_mt  87 ffdrseLParfrrkpideaEieaiesGGa 115
                 ffd seLParfrr+pid aEiea+esGGa
  CCE26960.1 108 FFDISELPARFRRAPIDLAEIEAVESGGA 136
                 ****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1041.55
//
Query:       CCE26961.1  [L=408]
Description: uncharacterized protein CPUR_00433 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-31  108.7   0.0    3.1e-31  107.7   0.0    1.6  1  DUF2183   Uncharacterized conserved protein (DUF2183)


Domain annotation for each model (and alignments):
>> DUF2183  Uncharacterized conserved protein (DUF2183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0   1.7e-35   3.1e-31       1      99 []     257     357 ..     257     357 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 1.7e-35
     DUF2183   1 ffYvSaspwnlyplleeFleenglPkgslllrdls.ltlksllkek..staehKraeiekiletfperkfiliGDsgqkdpeiYaeiakefpeqikaiy 96 
                 +fY+Sasp+nlyp+l++F +++ +P+g+l+lrd s +t+++ll++   +t+e+K+++++ki+ +fp rk+i iGDs+q+dpe+Y +++++ p++i+ i+
  CCE26961.1 257 WFYLSASPYNLYPFLKQFRKQY-YPPGTLILRDSSwKTIAGLLTALtvGTQEYKVDRMKKICGWFPMRKMIAIGDSTQSDPEAYGQMYRSSPNWIRLIL 354
                 8********************9.************99******965679************************************************** PP

     DUF2183  97 IRd 99 
                 IR+
  CCE26961.1 355 IRK 357
                 **6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3216.03
//
Query:       CCE26962.1  [L=1060]
Description: uncharacterized protein CPUR_00434 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0093   16.5   2.1     0.0093   16.5   2.1    4.5  4  Dehydrin  Dehydrin
  ------ inclusion threshold ------
          1    7.8  15.1      0.013   14.1   6.3    1.9  2  Macoilin  Macoilin family
        2.6    9.2   5.4         25    6.0   1.3    3.5  2  DUF1773   Domain of unknown function


Domain annotation for each model (and alignments):
>> Dehydrin  Dehydrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.4  15.4         3   1.8e+04      39      95 ..     289     347 ..     256     355 .. 0.38
   2 ?   -0.7   0.4      0.31   1.8e+03      72     109 ..     401     440 ..     356     452 .. 0.61
   3 !   16.5   2.1   1.6e-06    0.0093       3      97 ..     647     769 ..     646     771 .. 0.57
   4 ?   -2.0   0.3       0.8   4.8e+03      27      65 ..     837     882 ..     812     912 .. 0.57

  Alignments for each domain:
  == domain 1  score: -8.4 bits;  conditional E-value: 3
    Dehydrin  39 lasttgettea......ttgtgaaaGaaaaagggqlqptree...eehktgeelrrsgssSS..ssSE 95 
                 +a       e+      +tg++ +  ++++++++ l  +r +   ++ k  e+  r+ ssSS  ssS+
  CCE26962.1 289 TA-------EQlvlpasSTGATENSSKEQNGASESL--NRSSipsQSSKPVEIASRDTSSSStcSSSD 347
                 11.......111122111111111111111111111..111122234444566666664444223444 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.31
    Dehydrin  72 reeeehkt..geelrrsgssSSssSEDDGqGGRrKKgike 109
                 r++   +t  + + r+ +s SS +S D G   ++ K + e
  CCE26962.1 401 RNKSLSEThiSAIPRHMKSTSSRFSFDMGGAAKQEKLLEE 440
                 2222223322455566669999999996655566666655 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 1.6e-06
    Dehydrin   3 rvDeyGnPvaleagvgtta....................egaak.......aaaaeaalgtgalasttgett.ea...ttgtgaaaGaaaaagggqlqp 70 
                  +D++G Pv+    ++++                                 ++ +  + +t + ++   e+t +a   + +++ ++Ga++ a+  q   
  CCE26962.1 647 DTDQFGRPVPGAFQYAQSLrratqqhdltrennstsrlsA---PpaglrcnTHLSLRTDDTVHHST-VRENTdDAnqpQDAESLNHGAKSIAA-YQAAL 740
                 58*********98999977666666666555554444430...04444333222222222222222.22222222455888888999877775.55555 PP

    Dehydrin  71 treeeehktgeelrrsgssSSss..SEDD 97 
                 +   +++ + ++ rrs+ssSS+s   EDD
  CCE26962.1 741 AAAAHRAAATGKFRRSSSSSSASylVEDD 769
                 555545555899*****999887334777 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.8
    Dehydrin  27 aaaaeaalgtgalasttgettea.ttgtgaaaGaaaaag......g 65 
                 +++a++++ +ga + ++ e ++    g g+++G +++++      +
  CCE26962.1 837 TSHATTSYAAGASSLQGYEYANGgFFGPGGTHGLHRSTSgrmisrE 882
                 3444555555555544444442236677777777666653444333 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   6.3   2.2e-06     0.013     231     438 ..     215     419 ..     186     454 .. 0.59
   2 ?   -1.9   1.4      0.15   9.1e+02     273     347 ..     707     762 ..     655     796 .. 0.38

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-06
    Macoilin 231 pvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvd.sklqekeymenkskskrlsksessgsesellveesvkskssssssssn 328
                 p   +  ++ l +k++++ lp+l    +k++ ++  +d + k ++ ++    ++++  +++ +s + +++  ++ +++++l    s++  ++ ss+++n
  CCE26962.1 215 PFLKNPMSTLLMRKKNNQPLPDLRPILSKNKDEEPAYDPRIKGTRVHDFSaPRKSRGAHITTYSVP-QITAGTT-STAEQLVLPASSTGATENSSKEQN 311
                 444444555566667778888888777666666655555444333322220333333444444443.3333323.333444444444444444445555 PP

    Macoilin 329 knskkasagsagssnssskkhsessksvtsssssknskkqklpaGkssaalkdaaenslpnnqlskkdalvrLeadikkLkaeLqasrqteqelrskis 427
                   s++ + +s+ s++s + +  +++ s +s+ ss++++ + +    ++   +   e + p++ +s +d    +ea++  L + ++++r  ++ l +   
  CCE26962.1 312 GASESLNRSSIPSQSSKPVEIASRDTSSSSTCSSSDQDDHGVVDAVTTCPPERDQESITPSGDVSAEDVYKPVEAKVGVLSSSVRTTRSRNKSLSETHI 410
                 6666666666766666676666666666655566665555554444455777788999*********************************99987654 PP

    Macoilin 428 sltseerslks 438
                 s     r +ks
  CCE26962.1 411 SAIP--RHMKS 419
                 4333..44444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.15
    Macoilin 273 hehnesvdsklqekeymenkskskrlsksessgsesellveesvkskssssssssn.................knskkasagsagssnsssk 347
                 h+                                     v+e++++ ++++ ++s                   +   a+++   ss+sss+
  CCE26962.1 707 HST------------------------------------VRENTDDANQPQDAESLnhgaksiaayqaalaaaAHRAAATGKFRRSSSSSSA 762
                 111....................................11111111111111111111111100111111101111111112222222222 PP

>> DUF1773  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.3    0.0041        25      18      43 ..      41      65 ..      33      67 .. 0.79
   2 ?    2.6   0.2     0.047   2.8e+02       8      30 ..     136     158 ..     131     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0041
     DUF1773 18 sassvpflngeepedeePLLpdigsi 43
                +++ +p +n  +p +++PLLp+i+s+
  CCE26962.1 41 ASPHNPNPNYAIP-SNAPLLPPITSV 65
                5566788888888.667******997 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.047
     DUF1773   8 ldfskrksgysassvpflngeep 30 
                 +d+s+++++ + + v++l+ +++
  CCE26962.1 136 EDKSRHRNHRNQEVVTELPLKPH 158
                 89****************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1060 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 7126.29
//
Query:       CCE26963.1  [L=462]
Description: uncharacterized protein CPUR_00435 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-19   70.2   0.4    2.5e-19   69.2   0.4    1.6  1  DUF1992   Domain of unknown function (DUF1992)


Domain annotation for each model (and alignments):
>> DUF1992  Domain of unknown function (DUF1992)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.4   1.4e-23   2.5e-19       1      69 [.     168     236 ..     168     237 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 1.4e-23
     DUF1992   1 laEerIreAierGeFdnlpgrGKPLpldd.endplvpeeerlanrilknagvlPpeielrkeieelkell 69 
                 la++rI++Ai+rG+F+nlp rG+  p+d  +++p+++++e+++nr++++++++Pp+ie+++e+ ++ + +
  CCE26963.1 168 LANQRIEDAIARGQFKNLP-RGQEMPRDPrADSPFIDTTEFIMNRMIRRQELVPPWIEKQQELSKAVRVF 236
                 79****************7.7999**966899*******************************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3352.92
//
Query:       CCE26964.1  [L=167]
Description: probable adenylosuccinate lyase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-16   59.1   0.0    6.8e-16   58.6   0.0    1.3  1  ADSL_C      Adenylosuccinate lyase C-terminus
  ------ inclusion threshold ------
       0.12   12.7   0.0        1.9    8.8   0.0    2.0  2  P5CR_dimer  Pyrroline-5-carboxylate reductase dimerisation


Domain annotation for each model (and alignments):
>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   7.6e-20   6.8e-16       1      72 [.      57     138 ..      57     139 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 7.6e-20
                 TGGGHHHHHHHHH.HTH-HHHHHHHHHHHHHHHHHC.........HHHHHHT-HHHHCHHCHHHHHT-GGGCCTTHHHHHHH CS
      ADSL_C   1 GlifservllaLv.kglgReeAyelVqeaamkawee.........llelLaadpevkkseeeldalfdpayylgsadeivdr 72 
                 +++++e+++++Lv kg +R+eA+e ++ ++ +a+ +         l+e+++ ++ +k  + eld +++p+ y+g++ eiv++
  CCE26964.1  57 PFMVTETIIMKLVaKGASRQEAHEEIRVLSVQAASTvkdegkpndLIERIRGNEYFKPIWGELDSMLQPELYIGRSVEIVNK 138
                 79***********88******************************************98899*****************975 PP

>> P5CR_dimer  Pyrroline-5-carboxylate reductase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00022       1.9      19      66 ..      58     106 ..      56     110 .. 0.87
   2 ?    1.9   0.0      0.03   2.7e+02      60      88 ..     133     161 ..     116     165 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHCHS.HHHHHHHH CS
  P5CR_dimer  19 flliealadagvklGlsreeArelaaqtvaGaaklllese.paelrdkv 66 
                 f++ e ++   v++G sr+eA+e ++     aa+ +++++ p++l++++
  CCE26964.1  58 FMVTETIIMKLVAKGASRQEAHEEIRVLSVQAASTVKDEGkPNDLIERI 106
                 78999*****************999999999999888554699999986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.03
                 HHHHHHH--TTSHHHHHHHHHHHTTHHHH CS
  P5CR_dimer  60 aelrdkvtspgGtTiaglkeleegglraa 88 
                  e+ +k + pgG+ +++l+  ++  l+++
  CCE26964.1 133 VEIVNKYCGPGGVVEKALAPYQQYILKST 161
                 5788999**********998777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1297.73
//
Query:       CCE26965.1  [L=337]
Description: probable adenylosuccinate lyase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-19   68.1   0.3    1.2e-18   67.6   0.3    1.2  1  Lyase_1   Lyase
  ------ inclusion threshold ------
      0.099   12.9   2.0        0.3   11.4   0.8    2.2  2  THOC7     Tho complex subunit 7
       0.11   12.5   7.6       0.23   11.5   7.6    1.5  1  FlxA      FlxA-like protein
       0.12   12.7   0.0       0.42   10.9   0.0    1.9  1  DUF3040   Protein of unknown function (DUF3040)
       0.72    9.8   4.2        0.3   11.1   0.5    2.2  3  FAM180    FAM180 family


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.3   3.4e-22   1.2e-18      31     289 ..      64     315 ..      30     316 .. 0.75

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 3.4e-22
                 HHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSS.SHHHHHHHHHHHHHHHHTT.HSSGIIIIITTT--HHHHHHHHHHHHHHHHH CS
     Lyase_1  31 alaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqe.gsgtavnmnlnevigellg.ekvepndkvhtgqSsnDqvpTalrlalkkal 127
                     l++a a++++d+  + a++++ +++ l  ++ +d f+ ++i+e    ++v + +        g    ++++ +h g +s  + +    +++++al
  CCE26965.1  64 LWLGLAEAEASLGIDV--VTAEALDQMRAHLT-VSDED-FATASIEEkRRRHDVMAHVHA-F----GvVAPAAAGIIHLGSTSCFVTDNTELILMRDAL 153
                 4444667777777777..66666666666666.66663.333333330333444443332.2....1344899**********9888888889999*** PP

                 HHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEETTTTTTTSSTTTSCCTHHHHHHHHHHHH. CS
     Lyase_1 128 sekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvellgggtavgtglnadpefaelvakelakv. 225
                  + Ll++l + i+ l + a++ k+ + + +Th q A+P+t g   + +a+ l +d+e ++ ++  l+   ++g t++ + +    + ++  ++ l+++ 
  CCE26965.1 154 -DILLNKLAKVISNLAAFANQWKSEPTLAYTHFQSAQPITVGRRAAQWAQDLMMDLEAIEAVRSGLRFRGAQGTTGTQASFLEIFQGDHTKCDRLNELl 251
                 .67**********************************************************************98876654332222556666666431 PP

                 .HCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-T CS
     Lyase_1 226 .tglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSS 289
                  ++++   + ++ +++ +r   + ++ a++ la+s  k++ D+rll+s    ++e+   +s++GSS
  CCE26965.1 252 cEKFGfPACYDISTQTYTRKVDLVVANAVAGLAASAHKICSDIRLLAS--NKEIEEPKEASQIGSS 315
                 144443446677778888888888899*********************..9999***********9 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   8.3e-05       0.3      81     121 ..       2      42 ..       1      60 [. 0.91
   2 ?   -0.5   0.0      0.39   1.4e+03      31      53 ..     179     212 ..     150     215 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.3e-05
       THOC7  81 eseieavreeieelkaqLeearatranrkeydelaekItsn 121
                  +++++++++i+el++++ + +a+  ++  yd+  + +ts+
  CCE26965.1   2 TDQAQDAQTQIQELQKKIMQLQAQEPQKSPYDTYQTSLTSR 42 
                 5899*****************************99999987 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.39
       THOC7  31 a...........esteeeleqlkedllldfaafe 53 
                 +            +   + +q+ +dl++d++a e
  CCE26965.1 179 TlaythfqsaqpITVGRRAAQWAQDLMMDLEAIE 212
                 1444444444442234567778888888888776 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.6   6.4e-05      0.23      49      76 ..       3      30 ..       1      43 [. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.4e-05
        FlxA 49 kqqqliqaQIqqlqaQIaqlqqqqaeka 76
                 q+q  q+QIq lq+ I qlq+q+ +k 
  CCE26965.1  3 DQAQDAQTQIQELQKKIMQLQAQEPQKS 30
                589999*****************99885 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.42      10      57 ..      84     129 ..      82     142 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
     DUF3040  10 vLeeiEraLaaeDPklaaalrggaararrrslrrlavlavllfvaGll 57 
                 +L+++ ++L+ +D ++a a  ++++r++   + ++   +v++  a++ 
  CCE26965.1  84 ALDQMRAHLTVSDEDFATASIEEKRRRHD-VMAHVHAFGVVAP-AAAG 129
                 7*****************99444333333.3333223322222.2222 PP

>> FAM180  FAM180 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   8.5e-05       0.3      73     132 ..      11      71 ..       7      74 .. 0.88
   2 ?   -3.5   0.0       2.6   9.2e+03      44      55 ..      90     101 ..      83     115 .. 0.65
   3 ?   -1.2   0.0       0.5   1.8e+03     102     130 ..     179     208 ..     154     213 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.5e-05
      FAM180  73 kledirrliaelsrksgpLkkeDFErtvltlvytaqrlaea.seeeqkdvWaeslvsLfka 132
                 +++++++ i +l+ ++++ ++ D  +t lt  y++ ++++  s+++++ +W +  + L++a
  CCE26965.1  11 QIQELQKKIMQLQAQEPQKSPYDTYQTSLTSRYCSNEMTSLfSQRSRHSTWRKLWLGLAEA 71 
                 68999*******************************99885277778889*9998888775 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.6
      FAM180  44 gelsikDeELaS 55 
                  +l+++De+ a 
  CCE26965.1  90 AHLTVSDEDFAT 101
                 347788887753 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.5
      FAM180 102 tlvytaqrlaea.seeeqkdvWaeslvsLf 130
                 tl+yt  + a+  + +++   Wa+ l+   
  CCE26965.1 179 TLAYTHFQSAQPiTVGRRAAQWAQDLMMDL 208
                 788998887775145566678999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1369  (0.0763567); expected 358.6 (0.02)
Passed bias filter:                      941  (0.0524848); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 2506.80
//
Query:       CCE26966.1  [L=573]
Description: probable alpha-glucoside transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-85  286.8  17.5    3.4e-85  286.6  17.5    1.0  1  Sugar_tr    Sugar (and other) transporter
    2.1e-16   59.8  26.8    3.3e-11   42.7  10.7    2.2  2  MFS_1       Major Facilitator Superfamily
    0.00017   20.6   3.0    0.00017   20.6   3.0    2.2  2  MFS_1_like  MFS_1 like family
     0.0069   15.0   2.3     0.0069   15.0   2.3    3.0  3  MFS_2       MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.6  17.5   7.5e-89   3.4e-85       3     452 .]      72     529 ..      70     529 .. 0.92

  Alignments for each domain:
  == domain 1  score: 286.6 bits;  conditional E-value: 7.5e-89
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH....HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskee.ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 l+++++ +++gYd+ +++ f+++++f +++g  + ks ++e  + ++  + + ++vG+iiG ++ g++++rfG++ + +i+ vl    +++ ++a+   
  CCE26966.1  72 LLISTCIVMEGYDISLVNNFYAFPQFTRKYGEFQPKSGTYEvPAPWQAGLSNGAIVGEIIGLFINGFVSERFGYRHTVMICLVLITGFTAIFFTAP--- 167
                 67788889**********************97777777777689999999999*******************************999999999999... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylv 199
                 +v+ l+v+ +l+Gi++G++++l+ +y+sE++p +lRg+l+++ ++++ +G+ ++++   g+ + ++++ +ri+ +lq++++l l+i+++f+PESP++lv
  CCE26966.1 168 NVQTLLVAEILCGIPWGIFQTLAVTYASEVCPVALRGYLTTYVNFCWGLGQEIGIGAIRGMLDRDDEWAYRIPYALQWIWPLPLFIGIYFAPESPWWLV 266
                 9************************************************************888888******************************** PP

                 HTT-HHHHHHHHHH...HHHC..HHHHHHHHHHHHHHHHHHH.......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH.. CS
    Sugar_tr 200 ekgkeeeakevlak...lrge..edadrelaeekdsleaeqeee..kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks.. 289
                  kgk++eak+ l +   l++e   dad+ +a +++++  e++++   a+w+++++    ++r+ i+++++++q+l+G n++ +ys+++++++gls++  
  CCE26966.1 267 RKGKTQEAKQALLRltsLDKEteFDADETIAMMVHTTALEEKMTsgAAYWDCFKGV--DLRRTEIVCMTWAIQNLSG-NSFSNYSTYFLKQAGLSDKda 362
                 *************9555333355788888888888877776666889999999999..79*****************.*******************99 PP

                 HHHHHHHHHHHHHHHHHHHHHHH.HS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS....CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHH CS
    Sugar_tr 290 llvtiivgvvnfvatfvaiflvd.rfGRRtllllGaagmaicfvilgivalllvaks.kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRsk 386
                 + + ++ +++n++ +f a+ l+   +GRR l+l G++g +++++ilg    l+++++ +a s +    +++++ +++l++g+v++ lv El++ ++  k
  CCE26966.1 363 YSFALGQYAINMIGVFGAWGLMTlGIGRRSLYLYGLCGLCAMLFILG-FLGLVPHEHrQAGSLATGSIMIVWALFYQLTVGTVCYSLVGELSSRRLQIK 460
                 99999*************9777626*********************9.66666666667888888888899999************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHCHHH...T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 387 alaiavavnwlanflisllfpiiteaig...ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +  +  ++ +++ +++s+l+p++++  +     y++++++g++   ii+++f +pe  grt+ e++ lf
  CCE26966.1 461 TVVLGRNLYNIVGIITSILTPYMLNPGEwnwSNYTGFFWGGICFCCIIYTYFRIPEPRGRTFAELDVLF 529
                 ************************988888889*******************************99887 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7  10.7   7.4e-15   3.3e-11      40     257 ..     124     377 ..      72     380 .. 0.65
   2 !   21.4  11.9   2.3e-08    0.0001      16     187 ..     344     527 ..     329     555 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 7.4e-15
       MFS_1  40 lyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailg 137
                 +  +g +++ ++ G++s+rfG r  v+++ +l++++++++++ a+++ +llv+ +l+G+  g++ ++++++++++ p   rg  + +++ +++lG  +g
  CCE26966.1 124 GAIVGEIIGLFINGFVSERFGYRHtVMICLVLITGFTAIFFT-APNVQTLLVAEILCGIPWGIFQTLAVTYASEVCPVALRGYLTTYVNFCWGLGQEIG 221
                 3678999**************999899999999999944444.49999************************************************999 PP

       MFS_1 138 .pllgglla..sslgWravfyilaivsllafvlfllllpeepperkrkspkeee................................kgtgpaplvp... 198
                   ++ g+l   + + +r ++ +  i  l +f+     +++++++ + +++ +                                           +   
  CCE26966.1 222 iGAIRGMLDrdDEWAYRIPYALQWIWPLPLFI---GIYFAPESPWWLVRKGKTQeakqallrltsldketefdadetiammvhttaL--------Eekm 309
                 56666666654555588888888888888888...7777777777777766664555555566655444444444444333332220........1222 PP

       MFS_1 199 ........awkallkdpvlwillialllfffgfsg...lltllplylqevlgls...glllaglllallalvg 257
                          +k +  ++      i++ ++++ + +   ++ +++ +  ++ gls   ++  a++ +a+ ++++
  CCE26966.1 310 tsgaaywdCFKGVDLRR----TEIVCMTWAIQNLSgnsFSNYSTYF-LKQAGLSdkdAYSFALGQYAINMIGV 377
                 23333223233333333....3333333332222234144444444.88888887776555555666665554 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 2.3e-08
       MFS_1  16 gpalpl.alaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllf...a......sslw.l...llvlrvlqGlga 99 
                 +++++  +l+++ g +++++++++l+ ya+ ++     +G ++  +Grr+++l gl +++++l++l f   +      +++  +   ++v  ++  l  
  CCE26966.1 344 FSNYSTyFLKQA-GlSDKDAYSFALGQYAINMIGVFGAWGLMTLGIGRRSLYLYGLCGLCAMLFILGFlglVphehrqAGSLaTgsiMIVWALFYQL-- 439
                 444444233333.32577888888888999888888889999999*****************66666756524454553344341115555555555.. PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrkspkee 187
                  ++ +++++l+ ++++++ + + + l    +++  i++ +l ++++  + W ++ y   + + ++f  +++ +++ ++p+ +++++ + 
  CCE26966.1 440 -TVGTVCYSLVGELSSRRLQIKTVVLGRNLYNIVGIITSILTPYMLNPGEWNWSNYTGFFWGGICFCcIIYTYFRIPEPRGRTFAELDV 527
                 .589******************************************9999****66666666666554667999999999999887766 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   3.0   3.8e-08   0.00017     270     366 ..     126     221 ..     121     236 .. 0.86
   2 ?    2.2   1.2     0.015        66     226     310 ..     326     411 ..     290     445 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.8e-08
  MFS_1_like 270 vvaeiplfffaeklleklGhvklliiallayilrfllyaii.enawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralG 366
                  v+ei+ +f++  + e++G +  ++i+l++ i  f  + ++  n+  +l++e+L gi  g++   av+y+s++ p  l++ +   ++ +++glG+ +G
  CCE26966.1 126 IVGEIIGLFINGFVSERFGYRHTVMICLVL-ITGFTAIFFTaPNVQTLLVAEILCGIPWGIFQTLAVTYASEVCPVALRGYL-TTYVNFCWGLGQEIG 221
                 589***********************9876.5567666666799**********************************9965.679999*****9766 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.015
  MFS_1_like 226 eviifllvalilgmswgiienFlflYLkelgasnt.llGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaii 310
                 +  i++++ +i   s + + n+ + +Lk+ g s     + ++   ++  i +f     ++  +G + l + +l    + +++++++
  CCE26966.1 326 RTEIVCMTWAIQNLSGNSFSNYSTYFLKQAGLSDKdAYSFALGQYAINMIGVFGAWGLMTLGIGRRSLYLYGLCGLCAMLFILGFL 411
                 55678888899999999999999999999999965255666666667777777777777777777777777777777766666665 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   2.3   1.5e-06    0.0069     268     338 ..     125     193 ..     117     199 .. 0.87
   2 ?    1.9   5.1     0.015        65     243     338 ..     344     448 ..     302     452 .. 0.69
   3 ?    2.3   4.5     0.011        48      77     188 ..     401     509 ..     384     521 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-06
       MFS_2 268 vtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsm 338
                 ++++ ++g+++   +  r+g ++t++++++ +i +++ +++  + n+ ++lv+ ++ g++ g++++l+   
  CCE26966.1 125 AIVGEIIGLFINGFVSERFGYRHTVMICLV-LITGFTAIFFT-APNVQTLLVAEILCGIPWGIFQTLAVTY 193
                 5899*********************99965.57788888888.89*******************9998655 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.015
       MFS_2 243 lnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll........qpsnlllflvllviagfgvgvaa 332
                   + + Y+l+     +++a+s+ l+   i ++ ++  w  ++  +g++ +yl g++ + ++l+++ +l        q+++l++  ++ v a f   + +
  CCE26966.1 344 FSNYSTYFLKQAGLsDKDAYSFALGQYAINMIGVFGAWGLMTLGIGRRSLYLYGLCGLCAMLFILGFLglvphehrQAGSLATGSIMIVWALFYQLTVG 442
                 334444555444333789999999999*********************999988875555555555555789999766666555555555555555555 PP

       MFS_2 333 llpwsm 338
                 ++ +s+
  CCE26966.1 443 TVCYSL 448
                 555555 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.011
       MFS_2  77 ilavsiillf..tppelsqsakfiwllvtyillrily..tlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgy 171
                 + a+ +il f  ++p+  + a  +    ++i+++++y  t+ +++y slv +l++++ +  ++   r++++++g + ++il++ ++   +   s+ +g+
  CCE26966.1 401 LCAMLFILGFlgLVPHEHRQAGSLATGSIMIVWALFYqlTVGTVCY-SLVGELSSRRLQIKTVVLGRNLYNIVGII-TSILTPYMLNPGEWNWSNYTGF 497
                 4444444444123444444433333333444455555116667776.89999999999999999999999888765.5566666655544435566666 PP

       MFS_2 172 lifaliialLmllgvii 188
                 ++ ++ +++++     +
  CCE26966.1 498 FWGGICFCCII-----Y 509
                 66666655554.....3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 4579.63
//
Query:       CCE26967.1  [L=424]
Description: probable aspartate aminotransferase,mitochondrial precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-89  299.9   0.0      3e-89  299.7   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.7   0.0   1.7e-93     3e-89       2     363 .]      54     419 ..      53     419 .. 0.97

  Alignments for each domain:
  == domain 1  score: 299.7 bits;  conditional E-value: 1.7e-93
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E. CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgde. 95 
                    ++inLg+++y++d+gk + lp+v++ae + +   + ++ey  i+g p++    ak++   e   l+r a  + +sG+gal+  ++fl +++pgd+ 
     CCE26967.1  54 QKINLGVGAYRDDQGKpYILPSVREAEHK-VINDKLNKEYAGITGVPQFPALAAKLAYGAESPVLDRVAVTQSISGTGALRLGAAFLHRFFPGDKk 148
                    69***************************.999*************************7777778888889**********************988 PP

                    EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTT CS
  Aminotran_1_2  96 ilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYa 191
                    i++p+p++a++k ++  +g++v++y++y++++ +ld+e++ ++ k ap+g++   ++l++++hNPtG+++t e+++++ +++k++ ++ f+D+aY+
     CCE26967.1 149 IYIPTPSWANHKAVFSDAGLQVQQYRYYNKDSIGLDFEGMVADMKAAPKGSI---FLLHACAHNPTGVDPTVEQWKQISTVMKERDHFAFFDMAYQ 241
                    ****************************************************...***************************************** PP

                    TCBSSSS..HTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH.......HHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH...H CS
  Aminotran_1_2 192 gfvfgsl..davatranveeepnllivgslsKafGlaGeRvGyilgna.......avvsqlrklsrpfls..ssllqaavaaalsdallkqs...e 273
                    gf++g++  da a+r++v+e+ ++ +++s++K++Gl+GeRvG+++ ++        v sql++l rp++s  + +++++++++l++++l+++   e
     CCE26967.1 242 GFASGDTdkDAFAVRHFVKEGHEIGLCQSFAKNMGLYGERVGAFSLVCadaaekkIVDSQLKILIRPLYSnpPIHGARIATEILNNPKLYKQwldE 337
                    ******99999999********************************998*********************************************** PP

                    HHHHHHHHHHHHHHHHHHHHHS....TEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 274 leemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                    ++ m++r++++r  l+++L++l    ++++++sq+gmf +t+l+ae      + L++e+ vy t+        ++Ri+vAg t+e++ +l+ea+
     CCE26967.1 338 VKGMADRIITMRALLKKNLENLgskhDWSHITSQIGMFAYTGLTAE----EMERLAKEFSVYATK--------DGRISVAGITTENVGRLAEAI 419
                    *******************999************************....3456***********........*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2925.94
//
Query:       CCE26968.1  [L=343]
Description: uncharacterized protein CPUR_00440 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0039   17.9   2.3       0.27   12.0   0.0    2.8  3  Ku_C            Ku70/Ku80 C-terminal arm
  ------ inclusion threshold ------
       0.16   11.5   0.2       0.23   11.0   0.2    1.3  1  HMG_CoA_synt_C  Hydroxymethylglutaryl-coenzyme A synthase C t


Domain annotation for each model (and alignments):
>> Ku_C  Ku70/Ku80 C-terminal arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0     3e-05      0.27       9      45 ..      13      48 ..      11      63 .. 0.84
   2 ?   -2.4   0.0       0.9   8.1e+03      45      45 ..     218     218 ..     192     264 .. 0.62
   3 !    4.7   0.2    0.0056        50      28      59 ..     306     337 ..     294     342 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
                -HHHHHHHHHHHHHHTT---..---SS--HHHHHHHH CS
        Ku_C  9 NPsLqrhykiLqalAldedlpeeledktlpkyeaidk 45
                NP + ++y+ L  +Al++d   +  d+  p  +a+++
  CCE26968.1 13 NPEFAKLYRMLLEKALNPDGS-TKHDNSIPEGDAVQQ 48
                *******************96.888999888777665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.9
                 H CS
        Ku_C  45 k 45 
                 +
  CCE26968.1 218 A 218
                 1 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0056
                 -..---SS--HHHHHHHHH-....HHHHHHHH CS
        Ku_C  28 lpeeledktlpkyeaidkragslleewkelfe 59 
                   e+ ++kt++   +i+++ +s++e++k+ ++
  CCE26968.1 306 KSERDKEKTMREMARIHREMESQMEDVKKDLA 337
                 4568999********************99875 PP

>> HMG_CoA_synt_C  Hydroxymethylglutaryl-coenzyme A synthase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   2.6e-05      0.23     116     183 ..     223     291 ..     197     339 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.6e-05
                     T--GGGGGT-HHHHHHHHHHHHHHHHHHTGGGGHHHHHH---GGGHHHHHHHHHHHHS-HHHHTT.-EE CS
  HMG_CoA_synt_C 116 dlkldesltdkdlekallkiakelfkkkvkpsllvptevGnmYtaslyaalasllskvsadelag.kri 183
                     +l+ ++   ++ le + l++++++      +++ ++t   +mY + + +ala + s+ ++ +++  +r+
      CCE26968.1 223 TLESKHGSASRRLELQALNVSQDVQLTEAGAKVALNTTSKDMYAPEAISALANYSSHLKDAQIRAaERV 291
                     4677788899********************************************999999888764565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       971  (0.0541581); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2618.15
//
Query:       CCE26969.1  [L=181]
Description: related to ribosomal protein of the large subunit, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-09   36.7   1.4      6e-09   36.0   1.4    1.4  1  Ribosomal_L28  Ribosomal L28 family


Domain annotation for each model (and alignments):
>> Ribosomal_L28  Ribosomal L28 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   1.4   3.3e-13     6e-09      22      59 ..       7      44 ..       2      45 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 3.3e-13
                   .-SSS-BTTEEEEEEEE.TTTEEEEEEEEHHHHHH--. CS
  Ribosomal_L28 22 kTkRtwkPNlqkvrlwseelgrkvrikvstkcLRtidk 59
                   ++ R w+PNl+ ++++s++lg +++ k++ ++L+ti++
     CCE26969.1  7 RSPRFWRPNLHVKTFYSPALGANIKTKLTLRVLKTIRR 44
                   5789********************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1377.65
//
Query:       CCE26970.1  [L=721]
Description: probable tryptophan synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-95  316.8   0.0    1.2e-94  316.0   0.0    1.3  1  Trp_syntA  Tryptophan synthase alpha chain
    2.5e-48  165.0   1.6    3.9e-48  164.4   1.6    1.2  1  PALP       Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.0   0.0   1.3e-98   1.2e-94       1     240 [.       8     248 ..       8     262 .. 0.97

  Alignments for each domain:
  == domain 1  score: 316.0 bits;  conditional E-value: 1.3e-98
                 HHHHHCTTB-EEEEEEETTSS-HHHHHHHHHHHHHCT-SSEEEE---S--TTS-HHHHHHHHCCCCTT--HHHHHHHHHHHHHHCSSS-EEEEE-CHHH CS
   Trp_syntA   1 faklkaenraafvpyvtagdpdleqsleilkalekagadviElGlpfsdPladGPvIqaanlraLakgvtlekvlelveevrkkevevPivlltylnlv 99 
                 f++++a++raa+v+yvtag+p  +++ +il a+ek+g+d++ElG+pf+dP+adGP+Iq+an++aL++gv++e++l +v+++r++++++P++l++y+n++
  CCE26970.1   8 FQRCQAQKRAALVTYVTAGFPAPQDTPDILLAMEKGGSDILELGVPFTDPIADGPTIQTANTVALQHGVSIETTLTMVKKARNQGLKAPVLLMGYYNPL 106
                 7899*********************************************************************************************** PP

                 CCC-HHHHCHHHHHCTEEEEEETTSBCCCHHHHHHHHHHTT-EEEEEE-TTS-HHHHHHHHHH--S-EEEESTTC-SSTTSSB-TTHHHHHHHHHHCT. CS
   Trp_syntA 100 lsygeerflaelkeagvdglivpDlPleeaeelveaakkkglelvflvapttsderlkevveqaegfvYvvsraGvTgaenavaaevdelverlkklt. 197
                 lsygeer+l++++ +gv+g+iv+DlP+eea +++++++k +l++v+l+ap+tsd+r+k +++ a++f+Yvvsr+GvTga+ ++++++ +l+ r+kk++ 
  CCE26970.1 107 LSYGEERLLQDCQAVGVNGFIVVDLPPEEAISFRKLCTKGNLSYVPLIAPATSDARMKILCQLADSFIYVVSRQGVTGASGSLNTNLPALLDRVKKYSn 205
                 *************************************************************************************************98 PP

                 SS-EEEESSS-SHHHHHHHHTT-SEEEE-HHHHHHHHCTTTSH CS
   Trp_syntA 198 avPvavGFGistkeqvkqvakvadGvivGSalvkkieeeaeek 240
                 ++P+avGFG+st+e+  ++a+++dGv+vGS+++++++++a+++
  CCE26970.1 206 NKPTAVGFGVSTREHYLSIANITDGVVVGSQIIHTLQKAASGQ 248
                 9************************************977654 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.4   1.6   4.3e-52   3.9e-48       5     294 .]     371     695 ..     368     695 .. 0.88

  Alignments for each domain:
  == domain 1  score: 164.4 bits;  conditional E-value: 4.3e-52
                 SSS--EEEECCTCCCCCCE.EEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-...HHHHHHHHH CS
        PALP   5 igpTPlvrlprlskelgvp.lflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadas...pekvallrl 99 
                  +p++l+ ++rl+++ g++ ++lK+E+ln+tgS+K++ a   l+ +k+  ++k ++e+++G+hg+a+A ++a++G+++t+++ a +    + +v +++l
  CCE26970.1 371 GRPSRLHVADRLTEHAGGAtIWLKREDLNHTGSHKINNALGQLLLAKRLGKTKIIAETGAGQHGVATATICAKFGMECTVYMGAEDVrrqALNVFRMKL 469
                 5899999*********************************99999888879999999999**************************97767******** PP

                 TT-EEEEECCHHHHHHHHHHHHHHH...........STTCEE--TTTSHHHHHH.HHTHHHHHH....HHTTTTEEEEEEE-SSSHHHHHHHHHHHHHS CS
        PALP 100 lGaevvevggdydeavaaaaelaae...........gegaylvsqfdnptvieg.ygtiglEil....eqlggkpdavvvpvGgGgliaGiaaglkerr 182
                 lGa+vv v+ + ++ ++a++e+++            +++a+  ++f  pt++   ++ ig E      e+ g+ pdavv++vGgG+++aG+  ++  + 
  CCE26970.1 470 LGAKVVAVEAGSKTLRDAVNEALRAwvvdldtthyiIGSAIGPHPF--PTIVRTfQSVIGNETReqmlEKRGKLPDAVVACVGGGSNAAGMFYPFSTDL 566
                 ********************99999999998777766666667777..8999999********844445566************************865 PP

                 TT-EEEEEEEC..TTCGGTTCCS..S.SS..B.........................SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHH CS
        PALP 183 pdvrvigvepe..gsdalarslragrrvtvpvs........................dtiadglavgspselafelldrlvdeivtvsdeealeamrll 255
                 + v+++gve+   g+++  +s+       + ++                        ++   gl+ + ++++  ++ d+   ++++v+d++a+++ r +
  CCE26970.1 567 S-VKLLGVEAGgdGVETGRHSA-------TLSGgtkgvlhgvktyvlqdangqisetHSVSAGLDYPGVGPELSSWKDNERAKFIAVTDAQAFQGFRIM 657
                 5.9*****99844444444444.......3333355677777888999999999988999999999999****************************** PP

                 HHHHSB-B-HHHHHHHHHHHHHHHHCCTTCEEEEEEE-B CS
        PALP 256 arregivvepssaaalaalklreagelkegdrvvviltg 294
                  + egi++   +a+++ ++  + a+ +k++++ v+ l+g
  CCE26970.1 658 SQLEGIIPALETAHGIYGA-IELAKTMKKDEDLVICLSG 695
                 *******************.**************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 5188.35
//
Query:       CCE26971.1  [L=684]
Description: uncharacterized protein CPUR_00443 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00046   20.2   3.2      0.066   13.2   0.1    3.0  3  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C


Domain annotation for each model (and alignments):
>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   3.7e-06     0.066      29     124 ..     174     270 ..     163     281 .. 0.89
   2 !    6.0   0.3   0.00062        11      48     112 ..     434     499 ..     431     520 .. 0.56
   3 ?   -2.5   0.0      0.27   4.9e+03      69      86 ..     587     604 ..     569     609 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.7e-06
  Baculo_PEP_C  29 nvqilaqlatlldaietqLnalsedlksllaeldtrldt.lltnLtdalnalq.dtlrneLtnlnsiltnLlssvtNinstLnnllqalnnldlgal 123
                   +  ++a++++++d+  t++++++  l++ ++ +++ +++  + + t  + ++  +   n+L+++n   t+ + +v  +n+ L n  + ++nl+  a+
    CCE26971.1 174 TKDVTAAINKIVDKATTEIKDIAGGLEKGINGITKGVQDsIFGKFTPDIPRVDfTRPLNDLKGINISATDFVQDVQQLNEKLPNF-EEVQNLTRQAI 269
                   56799******************************99762679**********9999***************************6.77888877776 PP

  Baculo_PEP_C 124 s 124
                   s
    CCE26971.1 270 S 270
                   5 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.00062
  Baculo_PEP_C  48 nalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsilt.nLlssvtNinstLnnll 112
                   na+++++ +l  e+ +  d+++++L++a  + +++ +  +++ln +++ + l  v N   ++nn +
    CCE26971.1 434 NAIQKEVPELTGEIGAYADNVVSKLEQASTQWATDANGVIKGLNDDINkDVLGYVMNATGAVNNTI 499
                   455555555555555555566666666666666666666666666665234445555444444433 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.27
  Baculo_PEP_C  69 ltnLtdalnalqdtlrne 86 
                   +++++ a+n++++ lrn 
    CCE26971.1 587 TDEVSGAVNKVTNWLRNS 604
                   333333444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 5059.11
//
Query:       CCE26972.1  [L=103]
Description: probable autophagy protein AUT7 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-42  143.2   0.6      3e-42  143.0   0.6    1.1  1  Atg8      Autophagy protein Atg8 ubiquitin like
    0.00054   20.3   0.0    0.00062   20.1   0.0    1.2  1  APG12     Ubiquitin-like autophagy protein Apg12


Domain annotation for each model (and alignments):
>> Atg8  Autophagy protein Atg8 ubiquitin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.0   0.6   3.4e-46     3e-42       1      91 [.      13     103 .]      13     103 .] 0.99

  Alignments for each domain:
  == domain 1  score: 143.0 bits;  conditional E-value: 3.4e-46
                 HHHHHHHHHHHHSTTEEEEEEEE-TTSSS---S-SEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEETTE-SSTTSBHHHHHHHH--TTS CS
        Atg8   1 krkkesekirekypdriPvivekaekeklpeldkkkylvPedltvgqlvliirkrlqlepekalfllvnetlpstsatmsalyeeekdedg 91 
                 krk+e+e+ir+ky driPvi+ek+ek++++++dkkkylvP+dltvgq+v++irkr++l+peka+f++v+e+lp+t+a ms++yee+kdedg
  CCE26972.1  13 KRKAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDG 103
                 79***************************************************************************************96 PP

>> APG12  Ubiquitin-like autophagy protein Apg12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.9e-08   0.00062      10      71 ..      39      99 ..      28     103 .] 0.86

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.9e-08
                TTS---S--EEEEETTSBHHHHHHHHHHHCT-.SSSS-EEEETTTB---TTSBHHHHHHHH- CS
       APG12 10 gdvpilkkkklkvnasdtvakvilflkkeLklqaseslflYvnnsFaPsPdeeveeLyecfg 71
                +d+  + kkk+ v +  tv +++  ++k++kl+ ++ +f++v++   P+    +  +ye ++
  CCE26972.1 39 SDIATIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTA-ALMSSIYEEHK 99
                5788899*************************************998864.45666777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 780.93
//
Query:       CCE26973.1  [L=304]
Description: probable coproporphyrinogen oxidase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.3e-145  482.0   0.0   4.8e-145  481.8   0.0    1.0  1  Coprogen_oxidas  Coproporphyrinogen III oxidase


Domain annotation for each model (and alignments):
>> Coprogen_oxidas  Coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  481.8   0.0  2.7e-149  4.8e-145       2     296 .]       1     304 []       1     304 [] 0.98

  Alignments for each domain:
  == domain 1  score: 481.8 bits;  conditional E-value: 2.7e-149
  Coprogen_oxidas   2 veellkelqdeivkaleeldgkakfkedewereeggggisrvledgkvfekagvnvsvvegklpesavkqmraekk...eeleeleffaagvsl 92 
                      +e+++ke+q+ iv +le+ld ++kf++dewer++ggggi++vl+dg+vfekagvn+svv+g+lp+ a+++m+a++k   +++e+l+ffaag+s+
       CCE26973.1   1 MEKFIKEQQQIIVGELEKLD-GHKFRKDEWERKNGGGGITCVLQDGDVFEKAGVNISVVYGTLPKPAIQKMHANHKmldPNVESLDFFAAGLSM 93 
                      799*****************.89****************************************************999999************* PP

  Coprogen_oxidas  93 vihprnPlvPtvhlnyryfeaee...kkkawWFgGgaDLtPsylfeedavhfHktlkeacdkhdkelypkfKkwcDeyFyikhRkeaRGvGGif 183
                      v+hp+nP++Ptvhlnyryfe+++   +++awWFgGg+DLtP+ylf+eda+hfH+tlk+acd hdk++yp+fKkwcDeyFy+khR+e+RGvGGif
       CCE26973.1  94 VLHPKNPMAPTVHLNYRYFETANpdgSSQAWWFGGGSDLTPAYLFDEDAIHFHNTLKDACDCHDKSYYPRFKKWCDEYFYNKHREECRGVGGIF 187
                      *********************99777589***************************************************************** PP

  Coprogen_oxidas 184 fddlkes...aeelfafvksvgeaflpaYlpivekrkdtpyteeerewqllrrgryveFnLvyDrGtkfGLqte.grvesiLmslPptarweye 273
                      fddl+e    +e++faf++++ +af+p+Ylpi+ekrkd+p++e+e+ewq++rrg+yveFnLv+DrGt+fGL+t+ +rvesiL+slP ta+w+y+
       CCE26973.1 188 FDDLDEAesdQEKTFAFIQDCLKAFIPSYLPILEKRKDMPFNEKEKEWQQIRRGKYVEFNLVHDRGTSFGLNTPgSRVESILVSLPLTASWKYM 281
                      *****54556****************************************************************9******************* PP

  Coprogen_oxidas 274 lepeegseeaellevlkkpreWv 296
                      +epe gs+e++l+++lk+p++W+
       CCE26973.1 282 HEPELGSREQRLVDILKNPQDWL 304
                      **********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2356.10
//
Query:       CCE26974.1  [L=977]
Description: related to caffeine-induced death protein 1 Cid1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-17   62.5   0.0      8e-17   61.2   0.0    1.7  1  PAP_assoc       Cid1 family poly A polymerase
     0.0012   19.0   0.0     0.0042   17.4   0.0    2.0  1  NTP_transf_2    Nucleotidyltransferase domain
  ------ inclusion threshold ------
      0.016   15.5   0.0       0.63   10.3   0.0    3.0  2  Retrotrans_gag  Retrotransposon gag protein
      0.076   13.3   0.0       0.37   11.1   0.0    2.0  2  DUF5495         Family of unknown function (DUF5495)
       0.12   12.6   0.3       0.37   11.1   0.3    1.8  1  QVR             Sleepless protein


Domain annotation for each model (and alignments):
>> PAP_assoc  Cid1 family poly A polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   2.2e-20     8e-17       2      62 .]     815     909 ..     814     909 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 2.2e-20
                 HHHHHHHHHHHHHH..........T--TTTEEEECSS.T-EEEHHHHCGCS-.......................SSEECESSSSEBEETTCCCC CS
   PAP_assoc   2 LGeLLigFFeyYgr..........eFdyenvvisirt.ggiltkkekgwesa.......................eskernrfllaIeDPfeldn 62 
                 +G+L++gFFey+++           Fd++++v+s+rt gg+ltk+ekgw+ a                        ++ r+r+l+aIeDPfeld+
  CCE26974.1 815 IGQLIRGFFEYFAQsgpmghglgrGFDWGRDVLSLRThGGLLTKQEKGWTGAktviegrsptpsldsaqngnsthVKEIRHRYLFAIEDPFELDH 909
                 9************************************9999*********99***********************77789*************99 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.2e-06    0.0042       8      43 ..     262     299 ..     257     407 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
                   HHHHTT..TSEEEEEHHHHCTTSCTTSSEEEEEEESTT CS
  NTP_transf_2   8 lkelep..vakvvlfGSyarGtalkgSDiDllvvlpee 43 
                   +++++p  ++++ +fGS   G a++ SD+Dl +++p +
    CCE26974.1 262 VSSNFPksSVELKCFGSMSSGFATRSSDMDLGLLSPLS 299
                   56677777999**********************99976 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.095   3.4e+02      55      94 ..     415     470 ..     404     472 .. 0.75
   2 ?   10.3   0.0   0.00018      0.63      50      95 ..     570     622 ..     528     623 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.095
  Retrotrans_gag  55 slrQ.gtesvreYvtrfktladqldevlte................eakiekflaGL 94 
                     +l+Q ++ s++ Y+   k+++++    ++                   + ++f++GL
      CCE26974.1 415 ELKQtPNSSLKAYYCLAKRVLRRSGG-RDIigckqhefrssdwailNRICRAFVRGL 470
                     699***************99999885.332444666666666666666666666666 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00018
  Retrotrans_gag  50 eeelsslrQ.gtesvreYvtrfktladqlde.vlte.....eakiekflaGLn 95 
                     e el +l Q ++e+ +eY++r  +l+++l+e vl++     + ++ ++++G++
      CCE26974.1 570 EFELMQLAQkPKETPTEYYHRTCRLVCKLEEsVLHDfcykeQRLVLMYIKGID 622
                     66899*************************99777777777999999999976 PP

>> DUF5495  Family of unknown function (DUF5495)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.37      51      83 ..     368     402 ..     351     404 .. 0.86
   2 ?   -1.8   0.0       1.1     4e+03      23      38 ..     503     518 ..     494     521 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
     DUF5495  51 eyvdqfdsldaalgaanlmkclkl..ihplcfkig 83 
                  yvdqf+ ld  +  an +k + +  i p+c k  
  CCE26974.1 368 GYVDQFQELDGHIDVANAVKGVEVldIDPVCTKFQ 402
                 5*******************99874578***9976 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
     DUF5495  23 ltqiegngfileyefs 38 
                 +tq+eg+ ++l++++s
  CCE26974.1 503 FTQVEGERLLLDWQLS 518
                 69*********99887 PP

>> QVR  Sleepless protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3    0.0001      0.37      15      78 ..     546     612 ..     536     618 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
         QVR  15 kkCkdPfnetaekeeqlpvveC..eglCvKlvekkkek.eeavkRtCssklqiklelvdhvcmkesk 78 
                 ++ +dPf++++e +++ ++ +C  e   ++l +k ke+ +e+++RtC    +++ ++++  c ke++
  CCE26974.1 546 HYGDDPFTYNKELQSACELLRCqpEFELMQLAQKPKETpTEYYHRTCRLVCKLEESVLHDFCYKEQR 612
                 4678******************53334567777665544899**************99****99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 6679.61
//
Query:       CCE26975.1  [L=496]
Description: probable ribose-phosphate diphosphokinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-42  143.3   0.0    9.1e-41  138.5   0.0    2.3  2  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    5.3e-33  114.6   0.0    6.8e-28   97.9   0.0    2.3  2  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    7.5e-10   38.5   0.0    1.3e-05   24.8   0.0    2.4  2  Pribosyltran    Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.0   1.5e-44   9.1e-41       2     116 .]       5     120 ..       4     120 .. 0.98
   2 ?    2.4   0.0     0.024   1.4e+02      33      82 ..     374     420 ..     368     430 .. 0.74

  Alignments for each domain:
  == domain 1  score: 138.5 bits;  conditional E-value: 1.5e-44
  Pribosyltran_N   2 kifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPylgysrqdr 96 
                      ifag+s++ L  +i+++lg++ ++a++++f++gE++v+i +svr+kdvf++qs s+++nd++mell+mi+a++ +sa++itaV+Py++ysrq++
      CCE26975.1   5 LIFAGNSCPVLTGQICENLGITPADAELTQFSNGETSVRILTSVREKDVFVVQSGSPKINDSIMELLIMISACKGGSANKITAVLPYFPYSRQSK 99 
                     59********************************************************************************************* PP

  Pribosyltran_N  97 k.ksrepisaklvaklLeaaG 116
                     k + r +i+a+++a+lL  aG
      CCE26975.1 100 KkAYRGAITARMLANLLGVAG 120
                     *666*************9998 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.024
  Pribosyltran_N  33 adgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakri 82 
                     a  E+ +++  +vr+++v i+ ++ +++   +     +   ++++ akr+
      CCE26975.1 374 AKTEHMITLVGNVRNRTVLIVDDMIDKPGSWIAAAETV---VKKGGAKRV 420
                     56789999999************998877766544333...344555555 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     5e-06      0.03       1      38 [.     161     198 ..     161     209 .. 0.89
   2 !   97.9   0.0   1.1e-31   6.8e-28      68     183 ..     373     491 ..     354     492 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5e-06
                     TGGGEEEEESSGGGHHHHHHHHHHTT-EEEEE------ CS
  Pribosyl_synth   1 dyrnavivakspgsakkatsyaerlrlglavihGeqke 38 
                     ++r+av+v+k+ g +k+ ts a+ l+l   ++  ++k+
      CCE26975.1 161 NWREAVVVSKNAGGTKRVTSLADALKLNFGMVTTDRKR 198
                     5799************************9999888776 PP

  == domain 2  score: 97.9 bits;  conditional E-value: 1.1e-31
                     ---------EES--TTSEEEEEEEEE-S-HHHHHHHH.HHHHTT--EEEEEEEEE---TTHHHHHHHS.S--EEEEESSS--HHHHHT.-TTEEE CS
  Pribosyl_synth  68 lakekppltvvGdvgGriaiivddliddvesfvaaae.vlkerGaykiyvlathGllssdaprllees.aidevvvtntipheiqklr.cskikt 159
                      ak    +t+vG+v  r  +ivdd+id+  s++aaae v+k+ Ga ++y +athG++ +d  ++le   +id ++vtn+ p + +++r  +k+  
      CCE26975.1 373 GAKTEHMITLVGNVRNRTVLIVDDMIDKPGSWIAAAEtVVKKGGAKRVYCIATHGVFGEDCLEQLERCeCIDTILVTNSFPINQDRARnIKKLVV 467
                     5688889*****************************94568889999*******************8648***********9987765278999* PP

                     E--HHHHHHHHHHHHHT---TT-S CS
  Pribosyl_synth 160 vdislllaeairrihngesmsylf 183
                     +d+s ll+eairr h+ges+s lf
      CCE26975.1 468 LDLSFLLSEAIRRNHYGESISPLF 491
                     **********************99 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   3.3e-05       0.2      12      70 ..     148     204 ..     141     220 .. 0.86
   2 !   24.8   0.0   2.1e-09   1.3e-05      68     124 ..     369     426 ..     355     458 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.3e-05
                   EEEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--E CS
  Pribosyltran  12 ldavarlaaeileeyngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgsee 70 
                   + ++a+++++ +++  +++ vvv    gG  +++ lad+L++ + +v   ++r+ +++ 
    CCE26975.1 148 EPIIAKWIKRNVSN--WREAVVVSKNAGGTKRVTSLADALKLNFGMVTTDRKRGTNMTA 204
                   45688888888888..***********************************99988775 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 2.1e-09
                   --EE........EE----TTSEEEEE-SEESSSHHHHHHHH.HHHCC-BSEEEEEEEE CS
  Pribosyltran  68 seeaargssdesrlledpagkkVliVDDildtGgTllaale.lLkekgpeevriavlv 124
                   +  +  + ++ ++l +++++++VliVDD++d  g+ +aa+e  +k+ g+++v +++ +
    CCE26975.1 369 NAFQGAKTEHMITLVGNVRNRTVLIVDDMIDKPGSWIAAAEtVVKKGGAKRVYCIATH 426
                   333333333444899**************************99*******99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3632.90
//
Query:       CCE26976.1  [L=265]
Description: related to ketoreductases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-52  178.0   0.0    1.8e-52  177.7   0.0    1.1  1  adh_short        short chain dehydrogenase
    8.6e-37  126.9   0.0      1e-36  126.7   0.0    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.2e-13   51.4   0.0    1.8e-13   50.8   0.0    1.2  1  KR               KR domain
     0.0013   17.9   0.0     0.0029   16.8   0.0    1.7  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
      0.015   15.5   0.1       0.04   14.2   0.0    1.7  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   0.0   4.9e-56   1.8e-52       1     186 [.       9     204 ..       9     212 .. 0.96

  Alignments for each domain:
  == domain 1  score: 177.7 bits;  conditional E-value: 4.9e-56
                 SEEEEESTTSHHHHHHHHHHHH...TT-EEEEEESCHHHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SS CS
   adh_short   1 kvvlvtGassGIGraiakelak...eGakvvvvdrseekleevakelkee...gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgp 92 
                 k+vl+tGassGIGr +a e+a+   ++ ++++++r+ ++l+++a+e+ +e   g k+l+i++D++++eev+a+v++  ++++ ++vLvnNAG+ +g++ 
  CCE26976.1   9 KTVLITGASSGIGRSTAFEFARsspKNLRLILTARRIDNLHHIASEITQEvgdGVKVLPIKLDISNAEEVQAFVRDLPEDWKDIHVLVNNAGLvKGVAR 107
                 79*******************94445788999******************99999**************************************99999* PP

                 GGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH...HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHH CS
   adh_short  93 fselseeewervievNltgvflltravlpaml...kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdm 186
                 + e+++++++ ++++N+tg++++t+avlp +    ++ +G+I+nv+S+ag+++++g++ Y+A+Kaav+++t+sl+kel +t+irv+++ PG v+T++
  CCE26976.1 108 APEINQDDMQIMFATNVTGLINMTQAVLPVFRsrcDGGRGDIINVGSIAGREAYPGGSIYCATKAAVRSFTESLRKELISTRIRVIGIDPGQVETEF 204
                 *******************************99999***********************************************************97 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.0   2.9e-40     1e-36       1     228 [.      15     252 ..      15     254 .. 0.93

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 2.9e-40
                   TTTTSHHHHHHHHHHH...TT-EEEEEESSGGH.HHHHHHHHHHTTSEE....EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGG CS
  adh_short_C2   1 GaasgIGraiAkalae...eGaevvltdlneea.kkrveelaeelgaev....lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfle 89 
                   Ga sgIGr +A ++a+   +  +++lt ++ ++ ++ + e+++e+g  v    +++D+++ e+v+a+v+++ e+++ +++lvnnag ++   +++ e
    CCE26976.1  15 GASSGIGRSTAFEFARsspKNLRLILTARRIDNlHHIASEITQEVGDGVkvlpIKLDISNAEEVQAFVRDLPEDWKDIHVLVNNAGLVKG-VARAPE 110
                   899************93334788*******99999999*******96634489************************************9.99999* PP

                   H-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.....CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGG CS
  adh_short_C2  90 tsreefdraldvnlyslfllakaalplmkeg.....gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasg 181
                   +++++++ ++++n+++l+++++a+lp+++++     g i+n+ s++++ + p+ ++y+a+Kaa+ ++t +l +el + +iRv  + pg ++T+ +  
    CCE26976.1 111 INQDDMQIMFATNVTGLINMTQAVLPVFRSRcdggrGDIINVGSIAGREAYPGGSIYCATKAAVRSFTESLRKELISTRIRVIGIDPGQVETEFS-- 205
                   **************************999877888999******************************************************995.. PP

                   STTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEE CS
  adh_short_C2 182 ikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlv 228
                   + +fd  +++++a +   +  tp++vae+++f a  + + +   tlv
    CCE26976.1 206 LVRFDGNKAQADAVYAGCEPLTPDDVAEIIVFAATRRENVVVADTLV 252
                   5568888999999999999***************9999999888776 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0     5e-17   1.8e-13       2     165 ..      10     183 ..       9     196 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 5e-17
                 EEEEETTTSHHHHHHHHHHHHHH..S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.---T CS
          KR   2 tylitGGlGgLGlelarwlaekg..arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dkll 97 
                 t+litG+  g+G+++a   a++   + +l+l++R+  + ++ +++i++    g++v  +++D+s++++v+a ++++ ++ + i+  ++ Ag+++  +  
  CCE26976.1  10 TVLITGASSGIGRSTAFEFARSSpkNLRLILTARRIDNLHHIASEITQEVGDGVKVLPIKLDISNAEEVQAFVRDLPEDWKDIHVLVNNAGLVKgVARA 108
                 78*******************99555678******88888888889988899***************************************99856788 PP

                 TT--HHHHHHHHTTTTHHHHHHHHHTTT.......S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH CS
          KR  98 eemtaedleqvlapKvkGawnLhelled.......esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs 165
                  e +++d++ ++a  v+G+ n+ +++ +            ++ + Siag    +g + Y a+ a + ++ e+ r+
  CCE26976.1 109 PEINQDDMQIMFATNVTGLINMTQAVLPvfrsrcdGGRGDIINVGSIAGREAYPGGSIYCATKAAVRSFTESLRK 183
                 9***********************998777634332222477888888888888888888888888888877766 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.2e-07    0.0029       1     115 [.      11     134 ..      11     216 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.2e-07
                      EEEETTTSHHHHHHHHHHHHHB-SEE..EEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.......T-SEEEE---. CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkki..illerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel.....kvdvvfhaAA. 86 
                      vl+tGa+  iG++   ++++++pk++  il  r   +l++i++e+++e+ +  +  +++p+  d+ ++e+++  +++l     +++v+++ A  
       CCE26976.1  11 VLITGASSGIGRSTAFEFARSSPKNLrlILTARRIDNLHHIASEITQEVGD-GV--KVLPIKLDISNAEEVQAFVRDLpedwkDIHVLVNNAGl 101
                      89*******************9997611556788899*******9888887.45..778999*********99998652222245665555541 PP

                      ---H...HHHHHSHHH.HHHHHHHHHHHHHHHH CS
  Polysacc_synt_2  87 lKhV...Plveenple.aiktNvlgtenvieaa 115
                      +K V   P +++  ++ ++ tNv+g  n+ +a 
       CCE26976.1 102 VKGVaraPEINQDDMQiMFATNVTGLINMTQAV 134
                      566633355555555425678888888877765 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.1e-05      0.04       1      69 [.      11      84 ..      11     101 .. 0.92
   2 ?   -2.2   0.0       1.3   4.7e+03      46      66 ..     218     238 ..     198     257 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                     EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.....TTTCEEEEE--TTTHHHHHHHHHTT CS
  Sacchrp_dh_NADP  1 vliiGa.GsvGqavaellarhfdvdaeitvadrskeklealaaka.....lgvrfeaialdaenyeavLaallke 69
                     vli Ga  ++G+++a + ar+++   ++++  r  ++l+++a+++      gv++ +i+ld++n e+ ++a +++
       CCE26976.1 11 VLITGAsSGIGRSTAFEFARSSPKNLRLILTARRIDNLHHIASEItqevgDGVKVLPIKLDISNAEE-VQAFVRD 84
                     78999999**************9877****************999**********************.8888775 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
                      TTCEEEEE--TTTHHHHHHHH CS
  Sacchrp_dh_NADP  46 gvrfeaialdaenyeavLaal 66 
                       v + ++ l++++++++++ +
       CCE26976.1 218 AVYAGCEPLTPDDVAEIIVFA 238
                      445566667777777655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2039.68
//
Query:       CCE26977.1  [L=501]
Description: related to auxin-resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-12   45.7   0.0    8.1e-12   45.0   0.0    1.2  1  ThiF      ThiF family
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.34   11.1   0.0    1.8  1  E1_4HB    Ubiquitin-activating enzyme E1 four-helix bundle


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   9.1e-16   8.1e-12       1     162 [.      19     185 ..      19     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 9.1e-16
                 THHHHHHHHHHHHHHHHTSEEEEE..--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-C CS
                 xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   1 ysrqlallgedgqekLrdskvllv..GaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteri 97 
                 y+rql+l++ +gq +L+++ vllv  G G  G e+lknL+l G+g++t++D   ++  +l   f  +e+  Gk++a + ++ l e+np v    ++++ 
  CCE26977.1  19 YDRQLRLWAAAGQSALESANVLLVnsGGGSMGIEALKNLVLPGIGSFTIADEAIVQDADLGVNFFLNEACLGKSRARCCRDNLVELNPAVAGDWFPKEN 117
                 89****9999*************9778888**********************************************************99888888888 PP

                 CGCCS-HHH...HTT-SEEEEESSS.HHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTS CS
                 xxxxxxxxx...xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  98 tdetvleel...lesvDlVvdalDn.iearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeC 162
                 +d  + e l    + + +++ ++   ++   ++  + +++ ipl  a t gf+ ++  +ip+  ++ e 
  CCE26977.1 118 EDLDF-ERLlssSRPFTMILYTVPLaLKHSACLETYSRQRNIPLFAACTMGFYAYFSLRIPSLFPIVET 185
                 88433.344111444577776655447777778888888888888888888888777777766666555 PP

>> E1_4HB  Ubiquitin-activating enzyme E1 four-helix bundle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.7e-05      0.34      22      65 ..     304     347 ..     279     352 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.7e-05
                 S-GGGTTCHHHHHHHHHHHHHHHHCTT----TT-HHHHHHHHHH CS
      E1_4HB  22 sDfakfdrpeqlHlafqALhaFeeehgrlPrplneedaekvval 65 
                 +D  k d+++   ++ +A+++F+++h++lP p    d++++ + 
  CCE26977.1 304 VDHLKEDAHGDFWIISRAVQRFHQRHQQLPLPGGLPDMKALSKV 347
                 6777888889999999****************999888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3857.12
//
Query:       CCE26978.1  [L=149]
Description: related to DNA-directed RNA polymerase chain RPB8 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-43  146.1   0.0      8e-43  146.0   0.0    1.0  1  RNA_pol_Rpb8  RNA polymerase Rpb8
  ------ inclusion threshold ------
       0.17   11.9   0.5        6.3    6.9   0.0    2.3  2  PD40          WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb8  RNA polymerase Rpb8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   0.0   8.9e-47     8e-43       1     139 []      12     149 .]      12     149 .] 0.92

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 8.9e-47
                   EEEEEEEEEE-..TT-SSEEEEEEEESS-S-EEEEEEETTTS---SS-EEEEEEES-----------------.-......GGS-CGGGSSEEEBEE CS
  RNA_pol_Rpb8   1 ediFevkdvdkdgkkfdrVsRieaeseslemeltlDintelyplkegdkltlvlasslsldgskdeeeakksw.e......geksladkydYvmyGk 90 
                   e+ F+++d d+  +k+drV+Ri+++s ++++ ++lD+ntel+p++  d+l++vl+++ls dgsk+ e   k w +      + ++lad ydYv+yGk
    CCE26978.1  12 EESFTITDYDQ--SKYDRVARISCTSADTQTVMMLDVNTELFPCAVPDSLHVVLSTTLSPDGSKEVE---KGWrDvgkgadAPATLADLYDYVCYGK 103
                   689*******9..************************************************987744...44433455777999************* PP

                   EEEEEE-ST..T-EEEEEEBTTBEEEEEBSHHTTTSGSSS.EEBEBEE- CS
  RNA_pol_Rpb8  91 vYkieeeeskeekvkvyvSfGGLlmaLegdakklsklevdkrvYlLirk 139
                   +Yk+ee  +   ++ +yvSfGGLlm+L+g+ kkl+ l+vd +vYlLi+k
    CCE26978.1 104 IYKFEEPYD--GDTIAYVSFGGLLMSLRGPIKKLTPLRVD-NVYLLIKK 149
                   ******997..78899************************.*******8 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.011        99      15      22 ..      66      73 ..      64      73 .. 0.83
   2 ?    6.9   0.0    0.0007       6.3      19      30 ..     112     123 ..     112     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.011
                EE-TTSSE CS
        PD40 15 sfSPDGkr 22
                ++SPDG++
  CCE26978.1 66 TLSPDGSK 73
                89****85 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0007
                 TSSEEEEEEECT CS
        PD40  19 DGkrlaFsSdRg 30 
                 DG ++a++S++g
  CCE26978.1 112 DGDTIAYVSFGG 123
                 9********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1206.62
//
Query:       CCE26979.1  [L=331]
Description: uncharacterized protein CPUR_00451 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.021   14.9   0.4       0.26   11.4   0.1    2.5  3  DivIVA      DivIVA protein
      0.057   13.9   2.0      0.091   13.3   2.0    1.2  1  APG6_N      Apg6 coiled-coil region
      0.069   12.5   0.1       0.11   11.9   0.1    1.4  1  CNTF        Ciliary neurotrophic factor
       0.17   11.3   0.7       0.25   10.8   0.7    1.2  1  HMMR_N      Hyaluronan mediated motility receptor N-terminal
       0.22   11.6   5.7       0.36   10.9   1.1    2.2  2  TPR_MLP1_2  TPR/MLP1/MLP2-like protein
        2.9    8.0   6.1        9.5    6.3   1.0    2.2  2  Nup54       Nucleoporin complex subunit 54


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.4     7e+03      22      34 ..      71      83 ..      69      85 .. 0.88
   2 ?    0.6   0.0      0.18   5.4e+02      27      54 ..     129     156 ..     123     166 .. 0.72
   3 ?   11.4   0.1   8.8e-05      0.26      37      89 ..     193     245 ..     183     263 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.4
                HHHHHHHHHHHHH CS
      DivIVA 22 eVdeFLdqvakdy 34
                +V+ FL  v+kd+
  CCE26979.1 71 DVEPFLTHVTKDF 83
                7999*****9996 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHHHHHHHHCCCCT CS
      DivIVA  27 Ldqvakdyeallkeneelkekvkeleek 54 
                 Ld  + ++++++ e+++ k++v++l++ 
  CCE26979.1 129 LDRWITEVRRVMAERDAYKQQVSHLTDI 156
                 6666778888888888888888877654 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 8.8e-05
                 HHHHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  37 llkeneelkekvkeleeklkeykeleetLkktlvvaqetaeevkanakkeael 89 
                   +++eel+++ +++  ++++ k++e +L + l+ a +t     +  +k+ae 
  CCE26979.1 193 WGRRVEELTDQTSQMAAEIMDLKNREISLHRRLMDADNTESAPGQGGAKKAER 245
                 56899*********************************988877777777765 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.0   3.1e-05     0.091      13      81 ..     131     222 ..     127     237 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
      APG6_N  13 eldkqleqaekerdaYeeflkklkkekkeeek...................qdeeleeleee........leklekeeeelleeLkelekereele 81 
                 ++ ++++++ +erdaY++  ++l++ ++++e+                   +  +l+    e        +e+l ++ +++ +e+ +l++ + +l 
  CCE26979.1 131 RWITEVRRVMAERDAYKQQVSHLTDIAQTAEDnlawfhrdhtrrlaeceedHARQLA----EcddewgrrVEELTDQTSQMAAEIMDLKNREISLH 222
                 5567889999**************998887766677766643333332222111111....12222333333334444444333333333333333 PP

>> CNTF  Ciliary neurotrophic factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.7e-05      0.11      61     141 ..     147     233 ..     122     253 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.7e-05
                 ----TT--H.HHHHHHHHHHH.HHHHHHHHHHHHHHHCTTSTT-HHHHHHHHHHHHHHHHHHHHHHHH....HHHTT------STT- CS
        CNTF  61 verWselte.aerlqenlaay.rafrvllarlledqreqlteteadlhqaiaavllqvaafayqleel....lallerkiPaeeadg 141
                  ++ s lt+ a+   +nla + r     la+  ed   ql+e+++++++ ++ +  q + +a ++ +l    + l  r + a+++++
  CCE26979.1 147 KQQVSHLTDiAQTAEDNLAWFhRDHTRRLAECEEDHARQLAECDDEWGRRVEELTDQTSQMAAEIMDLknreISLHRRLMDADNTES 233
                 5677788874677889999872555568******************************99998766552222334444444555555 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.7   8.4e-05      0.25     230     320 ..     130     217 ..     125     224 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.4e-05
      HMMR_N 230 leyieelsnvseqlekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekckllekekeelvreeeekeqtlsaEleelkek 320
                    i+e++ v  + + yk+++ +l +++++++d++        + +  l +  +d   ++ + + e    v+e   +++++ aE+ +lk++
  CCE26979.1 130 DRWITEVRRVMAERDAYKQQVSHLTDIAQTAEDNLAWFHR---DHTRRLAECEEDHARQLAECDDEWGRRVEELTDQTSQMAAEIMDLKNR 217
                 567999999*9999**********************8876...456667788899999999999***********************9975 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2     0.043   1.3e+02      16      44 ..     135     163 ..     125     165 .. 0.51
   2 ?   10.9   1.1   0.00012      0.36      74     126 ..     173     225 ..     167     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.043
  TPR_MLP1_2  16 ekeeaeaklqklqedlekqaeiakeaqqk 44 
                 e  +  a+  ++++++   ++ia++a+++
  CCE26979.1 135 EVRRVMAERDAYKQQVSHLTDIAQTAEDN 163
                 33444444444555555555555555544 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00012
  TPR_MLP1_2  74 aelkaeaesakaeleeseesweeqkeelekelselekriedlneqNklLhdQl 126
                 + l +  e+   +l+e+  +w ++ eel ++ s++ + i dl++    Lh +l
  CCE26979.1 173 RRLAECEEDHARQLAECDDEWGRRVEELTDQTSQMAAEIMDLKNREISLHRRL 225
                 566777788999********************************999999887 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.9     0.013        40      36      83 ..     137     184 ..     134     189 .. 0.93
   2 ?    6.3   1.0    0.0032       9.5      53      89 ..     191     226 ..     180     232 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Nup54  36 kRvkaQqkevaqhrerlkeisdrleeleqkhqletsvrlekakkrhve 83 
                 +Rv a +++ +q+ ++l++i++ +e+   + + + + rl+++   h+ 
  CCE26979.1 137 RRVMAERDAYKQQVSHLTDIAQTAEDNLAWFHRDHTRRLAECEEDHAR 184
                 7999999*******************999**************99986 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0032
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Nup54  53 keisdrleeleqkhqletsvrlekakkrhvelshRll 89 
                 +e   r+eel   +  ++++++ ++k+r++ l++Rl+
  CCE26979.1 191 DEWGRRVEELT-DQTSQMAAEIMDLKNREISLHRRLM 226
                 56677999999.9999*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      685  (0.0382063); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 2682.06
//
Query:       CCE26980.1  [L=772]
Description: uncharacterized protein CPUR_00452 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-30  102.8   0.0    1.5e-29  101.9   0.0    1.5  1  RT_RNaseH_2     RNase H-like domain found in reverse transcri
    6.9e-28   97.0   0.0    1.3e-27   96.1   0.0    1.5  1  RT_RNaseH       RNase H-like domain found in reverse transcri
    2.4e-19   69.7   0.1    1.7e-18   66.9   0.0    2.5  3  rve             Integrase core domain
    1.1e-14   54.2   0.5    2.7e-14   53.0   0.5    1.7  1  Integrase_H2C2  Integrase zinc binding domain
    2.8e-05   23.9   0.8    7.8e-05   22.5   0.8    1.8  1  Chromo          Chromo (CHRromatin Organisation MOdifier) dom
  ------ inclusion threshold ------
      0.088   13.0   0.0       0.18   12.1   0.0    1.5  1  zf-H2C2         H2C2 zinc finger
       0.45   10.7   5.7       0.18   12.0   1.8    2.5  3  SelB-wing_2     Elongation factor SelB, winged helix
        1.4    8.8   0.0        1.4    8.8   0.0    3.6  4  zf-trcl         Probable zinc-ribbon domain


Domain annotation for each model (and alignments):
>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.0   6.8e-33   1.5e-29       1      95 [.      58     153 ..      58     160 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 6.8e-33
  RT_RNaseH_2   1 WteeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgk.erpiafaSrklskaernysttekellAivwalkkfrhyllg 95 
                  Wt ++++af++lk++l sap+Lah+d ++++ +etD+Sd  +++vL qed+d+k  +p+af+ +++++ae ny++++kellAi+ alk++r  l +
   CCE26980.1  58 WTATEQEAFQELKNRLLSAPILAHFDGKRKTRVETDSSDGVCAGVLVQEDPDTKqVHPVAFYTKTMNSAECNYPIHDKELLAIILALKEWRAELRS 153
                  ******************************************************9************************************98865 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.0   5.7e-31   1.3e-27       3     104 ..      85     189 ..      83     190 .. 0.95

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 5.7e-31
                 TS-EEEEEEECTEEEEEEEEEETTE...EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--.EEEE-SS--TTTTT----.---HHHH CS
   RT_RNaseH   3 skpfiletDAsddgigavLsqreedge.erpiafaSrklsgaernystiekellAivaalkkfrhylqg.rk.ftvitDhknlkyllskkslngrlarW 98 
                 ++++ +etD+sd ++++vL+q++ d++  +p+af+ +++++ae ny++++kellAi+ alk++r  l++ +  f+vitDh++l ++  k+ l+ r+arW
  CCE26980.1  85 KRKTRVETDSSDGVCAGVLVQEDPDTKqVHPVAFYTKTMNSAECNYPIHDKELLAIILALKEWRAELRSvTGpFEVITDHEALVHFSMKQLLSYRQARW 183
                 7899*****************99998879****************************************8668**************999999****** PP

                 HHHC-X CS
   RT_RNaseH  99 aleLse 104
                 ++eLs 
  CCE26980.1 184 SEELSG 189
                 ****85 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       7.7   1.7e+04      55      74 ..     311     330 ..     309     330 .. 0.87
   2 !   66.9   0.0   7.8e-22   1.7e-18       2     115 ..     371     482 ..     370     485 .. 0.96
   3 ?   -1.7   0.0       1.4   3.2e+03      10      62 ..     533     587 ..     531     609 .. 0.67

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 7.7
         rve  55 leravarfggvepervlsDn 74 
                 l++a+++ g  +++r++sD+
  CCE26980.1 311 LDKALCHPGRNKMRRLVSDR 330
                 78899999999999999997 PP

  == domain 2  score: 66.9 bits;  conditional E-value: 7.8e-22
         rve   2 trpgelwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpg 100
                 +rp ++++vD++ ++  d+ g+  + vv++  s+  +++++ +  +a+++++l+   ++r +g  pe+v+sD+g++++s  ++ef++ lgi+ +++  g
  CCE26980.1 371 DRPFQKVSVDFKSMS-LDKHGFDNVMVVMCRLSKQSITIPCHKTVTAAQMARLWLDHIWRHFGP-PEEVVSDRGPQFISAFWEEFCQLLGIKRKLSTSG 467
                 589*********999.77888******************************************9.********************************** PP

         rve 101 rpqdnGkvErfhrtl 115
                 +pq+ G  E+f++tl
  CCE26980.1 468 HPQTDGQTENFNQTL 482
                 **************8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.4
         rve  10 vDvt..vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarf 62 
                 +D+t  + + ++ +++   +++v  + r+ la+ + +  + ++  +  ++a +++
  CCE26980.1 533 MDWTqkTAKFKSANEEMNRTTAVRYAERMHLAWTIARAGMEKAQERQCKQANKKR 587
                 6777664444455556888889999999999999988844444444444454444 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.5   1.2e-17   2.7e-14       4      57 ..     300     355 ..     298     356 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.2e-17
  Integrase_H2C2   4 slrkeilkeaHds..agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                     +lr ++l+++H +  ++H+G++k+ +++++ry+Wp+   dv  yv++C tC r++p
      CCE26980.1 300 NLRTRVLEYIHLDkaLCHPGRNKMRRLVSDRYFWPRHMGDVDVYVRNCLTCRRSQP 355
                     79***************************************************987 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.8   3.5e-08   7.8e-05       1      53 [.     678     726 ..     678     727 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.5e-08
                 EEEEEEEEEEEETTEECEEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHH CS
      Chromo   1 yeVerIidhrtdkdgleleYlVKWkglpysentWEpeenlekcfqelideFkk 53 
                 yeV++I+++r+ +++l  +Y+V W g++++e+ W ++ n ++  ++ + ++++
  CCE26980.1 678 YEVDKILSSRVFRGKL--QYKVAWTGWDPDEE-WYDAGNFKNA-PHRLYQYHE 726
                 89**************..***********985.8888898887.888888886 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.9e-05      0.18       4      38 ..     316     350 ..     314     351 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.9e-05
     zf-H2C2   4 tHlGinkltallarkYhwlgiketvseVissCkaC 38 
                  H G nk++ l+  +Y w++    v+  +++C +C
  CCE26980.1 316 CHPGRNKMRRLVSDRYFWPRHMGDVDVYVRNCLTC 350
                 599******************99999999999999 PP

>> SelB-wing_2  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1         8   1.8e+04      33      48 ..      64      79 ..      60      80 .. 0.68
   2 ?   -2.6   0.0       2.9   6.6e+03      19      28 ..     148     157 ..     148     176 .. 0.67
   3 ?   12.0   1.8   8.2e-05      0.18       4      19 ..     721     736 ..     719     737 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 8
                 CCHHHHHHHHHHTTSE CS
  SelB-wing_2 33 klfqallealvargil 48
                 ++fq l ++l+ + il
   CCE26980.1 64 EAFQELKNRLLSAPIL 79
                 6777777777776665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.9
                  HHHHHHHCSS CS
  SelB-wing_2  19 keeLrsrlap 28 
                  ++eLrs+  p
   CCE26980.1 148 RAELRSVTGP 157
                  7999999877 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 8.2e-05
                  HHHHHHH-TTS--EEH CS
  SelB-wing_2   4 LaeYHrenPlrpGmsk 19 
                  L +YH+e+P++pG +k
   CCE26980.1 721 LYQYHEEHPDKPGPPK 736
                  779**********998 PP

>> zf-trcl  Probable zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00064       1.4      11      26 ..      53      68 ..      52      78 .. 0.87
   2 ?   -1.0   0.1      0.75   1.7e+03      35      43 ..     346     354 ..     330     358 .. 0.81
   3 ?   -3.9   2.8         6   1.4e+04      37      47 ..     578     588 ..     575     589 .. 0.85
   4 ?    0.8   0.1      0.21   4.7e+02      20      35 ..     705     720 ..     702     720 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00064
     zf-trcl 11 gaefvFtageQeFyae 26
                ga fv+ta eQe ++e
  CCE26980.1 53 GAPFVWTATEQEAFQE 68
                789*********9988 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.75
     zf-trcl  35 RCkaCRkar 43 
                  C +CR+ +
  CCE26980.1 346 NCLTCRRSQ 354
                 699999875 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 6
     zf-trcl  37 kaCRkarkqrr 47 
                 ++C++a+k+rr
  CCE26980.1 578 RQCKQANKKRR 588
                 58999999987 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.21
     zf-trcl  20 eQeFyaekgfdnepkR 35 
                 + e+y    f+n p R
  CCE26980.1 705 DEEWYDAGNFKNAPHR 720
                 569999999*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5396.09
//
Query:       CCE26981.1  [L=90]
Description: uncharacterized protein CPUR_00453 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00099   19.3   1.4     0.0016   18.7   1.4    1.4  1  ESSS       ESSS subunit of NADH:ubiquinone oxidoreductase (co
  ------ inclusion threshold ------
        1.8    7.6   9.6        1.9    7.6   9.6    1.1  1  Med3       Mediator complex subunit 3 fungal
        3.7    5.4   4.2        3.5    5.5   4.2    1.0  1  Dicty_REP  Dictyostelium (Slime Mold) REP protein
        4.6    5.3  13.9        5.4    5.1  13.9    1.1  1  SSP160     Special lobe-specific silk protein SSP160


Domain annotation for each model (and alignments):
>> ESSS  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.4   3.5e-07    0.0016      57      95 ..      36      74 ..      17      81 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.5e-07
        ESSS 57 fgvsivlVlgsvfvaYlpdtsiqeWArrEAerllkrREa 95
                 + +    + +++ a++p +++q W r+E +r+++ RE 
  CCE26981.1 36 ATATATATVMAAATAWKPFNRRQSWNREEQKREMQMREV 74
                555555666778999**********************96 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   9.6   0.00043       1.9     154     206 ..       7      60 ..       2      78 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00043
        Med3 154 tPgantktaakslpapnatatigtpt.nsaaaaattatttssqakkPrkPrqtk 206
                  P  +++ aa s  +p +  t  t t  +a+a+at++  ++++a kP   rq+ 
  CCE26981.1   7 LPILSSQGAAPSDHKPPTVNTTTTTTtATATATATATVMAAATAWKPFNRRQSW 60 
                 55556666666666665555555554134444455555678999***9999975 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.2   0.00079       3.5     248     285 ..      21      58 ..       4      89 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00079
   Dicty_REP 248 qpskeknkttttttttttttsqartrkrkaidddklse 285
                 +p + +++ttttt+t t t ++++     a ++ +  +
  CCE26981.1  21 KPPTVNTTTTTTTATATATATATVMAAATAWKPFNRRQ 58 
                 22222333333333333333333333222222222222 PP

>> SSP160  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  13.9    0.0012       5.4     671     706 ..      14      50 ..       4      58 .. 0.54

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0012
      SSP160 671 gsvpdeattttssttttttt.tttaaptttttkaana 706
                 g+ p++ +  t  ttttttt t+ta+ t+t   aa a
  CCE26981.1  14 GAAPSDHKPPTVNTTTTTTTaTATATATATVMAAATA 50 
                 6666665554544444444404444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1326  (0.0739584); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 709.53
//
Query:       CCE26982.1  [L=576]
Description: related to probable transcription factor PLM2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 4665.29
//
Query:       CCE26983.1  [L=388]
Description: uncharacterized protein CPUR_00455 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-67  225.6   1.5    4.9e-67  225.6   1.5    1.6  2  Ribosomal_L1  Ribosomal protein L1p/L10e family
  ------ inclusion threshold ------
       0.18   11.6   0.2       0.18   11.6   0.2    2.6  3  TraF          F plasmid transfer operon protein


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.6   1.5   5.4e-71   4.9e-67      12     203 ..      41     289 ..      30     290 .. 0.82
   2 ?   -3.3   1.0      0.68   6.1e+03      59      87 ..     346     374 ..     333     382 .. 0.51

  Alignments for each domain:
  == domain 1  score: 225.6 bits;  conditional E-value: 5.4e-71
                   E....................EEEEEEESSS-TTSGGG-.-EEEEE-STSTSSC..S-EEEEE-HHHHH........HHHHTT.........-SEEE CS
  Ribosomal_L1  12 s....................veialnlttkkpkkadqr.kpgkipLphplgke..vkiclitkdpqaey.....akeakeag.......riakvig 73 
                   s                    ++i+l+lttk+++ ++ r +pgki++ph+l+++  ++ic it+dpq++y            +       ri++vi+
    CCE26983.1  41 SakdatkrnllededgevdedTPIWLTLTTKRHIADKARlQPGKISVPHSLNTDenSTICAITADPQRAYkniigS-----DDfpaelskRITRVID 132
                   333444555555555555555**************9999***********888778**************555552.....4455555789****** PP

                   TCHHHHHHT-HHHHHHTCCH-SEEEEEGGGHHHHHHHCHHHHGGGT.-S-ECC...C..T.BTS-.........................HHHHHHH CS
  Ribosomal_L1  74 lkklkkkyksfeakrkllkefdlfladdrimpllpklLGkvfgkrk.kmPipv.ltk..gtvked.........................vkkevek 141
                   ++klk+ky ++ea+rkl++e+d+f+ad+ri+++lpk+LGk+f+k++ k+Pipv l+    +v  d                         ++ke+ek
    CCE26983.1 133 FTKLKAKYGQYEAQRKLFSEHDIFVADERIINRLPKVLGKTFYKTSaKRPIPVvLQAkrPKV--DgkrpkradktksteedvvnagtaadIAKEIEK 227
                   ******************************************65544******633323222..24455555666677777888888888******* PP

                   HCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHT.STTTSGSEEEEEEEETTS CS
  Ribosomal_L1 142 alkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvek.vpkkwkniksiylkttms 203
                   al+s++v + +++t+++v++G+++++ae++a+N++avv+ lv k vp+kw+n++siy+k++++
    CCE26983.1 228 ALSSALVSL-APTTNTAVRIGYAHWSAEQIADNVDAVVTGLVGKwVPQKWRNVRSIYIKGPNT 289
                   ***999999.***************************************************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.68
                   ..HHHHTT..-SEEETCHHHHHHT-HHHH CS
  Ribosomal_L1  59 akeakeagriakviglkklkkkyksfeak 87 
                   +k+ak++  +      +kl k++ +++ak
    CCE26983.1 346 KKKAKKQAPVVAESNDDKLDKQIAERKAK 374
                   34444444333334445555555433333 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2      0.65   5.8e+03      14      51 ..      35      72 ..      25      85 .. 0.58
   2 ?   11.6   0.2     2e-05      0.18       3      65 ..     173     243 ..     171     259 .. 0.87
   3 ?   -2.7   6.3      0.46   4.1e+03      14      53 ..     341     379 ..     319     388 .] 0.50

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.65
        TraF 14 ekkekakppkaakpalkeptseesatesaaelrkelee 51
                +k++k+  ++a+k +l e ++ e+++ ++ +l+ ++++
  CCE26983.1 35 KKAAKQSAKDATKRNLLEDEDGEVDEDTPIWLTLTTKR 72
                34444445555555555556666666677676665554 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2e-05
        TraF   3 fwYedppke......keekkekakppkaakpalkeptseesatesaaelrkeleelldkAi..lnPteenv 65 
                  +Y++  k       ++++++   ++++++ ++k++++ ++   +aa++ ke+e++l  A+  l Pt +++
  CCE26983.1 173 TFYKTSAKRpipvvlQAKRPKVDGKRPKRADKTKSTEEDVVNAGTAADIAKEIEKALSSALvsLAPTTNTA 243
                 6898888778999998899999999999999999**************************98888887765 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.46
        TraF  14 ekkekakppkaakpalkeptseesatesaaelrkeleell 53 
                 e ++++k+ k+++p ++e+++ + +++ a++  ++l++++
  CCE26983.1 341 ESPAPKKKAKKQAPVVAESNDDKLDKQIAERK-AKLKKQK 379
                 33333333333344433444444444433333.3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1455  (0.0811534); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3065.24
//
Query:       CCE26984.1  [L=335]
Description: related to palmitoyl-(protein) hydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-70  237.4   0.0    2.4e-70  237.1   0.0    1.1  1  Palm_thioest   Palmitoyl protein thioesterase
     0.0036   16.7   0.0      0.014   14.7   0.0    1.9  2  DUF915         Alpha/beta hydrolase of unknown function (DUF9
  ------ inclusion threshold ------
       0.14   12.0   0.2        6.3    6.5   0.2    2.4  1  Abhydrolase_2  Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.1   0.0   4.1e-74   2.4e-70       1     242 []      31     299 ..      31     299 .. 0.90

  Alignments for each domain:
  == domain 1  score: 237.1 bits;  conditional E-value: 4.1e-74
  Palm_thioest   1 PvviwhGl.dsaesn.mqklaeliekli.gtyvknve.igeseaedrkasffgnlndqveavckk......lelangfhaiGfSQGglflRalierc 87 
                   P++iwhGl dsa+s+ + ++a+l+ +   g+ v++++ + ++ a+dr+a+ffgn+++q++ vc++      l++a  ++aiGfSQGg+flR+++erc
    CCE26984.1  31 PLIIWHGLgDSASSEsLAQIAHLADTIApGILVHIINpTPDNTADDRSATFFGNVTEQIQTVCTQlahhpiLSTAPAVDAIGFSQGGQFLRGYLERC 127
                   89******8777777977777777776658******98889999***************************77999********************* PP

  Palm_thioest  88 ddkknvrnlislggpqaGvfgl.......llckvaekllasgavysklvqkslvqaqywrdpekle............eYlkknkFLpdiNnerdha 165
                   ++  ++rnli++g++++G+  +       ++ck a++ll+++ v+ ++vq+++v+aqy+r    ++            +Yl+++++L+diNner+  
    CCE26984.1 128 NKP-PLRNLITFGSQHNGITSFrdcaasdFVCKTAMALLRYN-VWGSFVQSRVVPAQYFRPAVTTApegedddddeyrSYLEHSNYLADINNEREV- 221
                   755.5****************6777888999***********.*****************887533455666677777***************975. PP

  Palm_thioest 166 knetykknllkleklvlvgfsdDtvvvPkeSslf.gfykekseevpleetelYkedllGLrtLdergrlellevpgeH 242
                   kn++yk n+++le+lvl++f++Dtv +PkeS++f g+++++++ + l+++++Yked+lGLr Lderg+l++ +vpgeH
    CCE26984.1 222 KNAKYKSNVARLENLVLYMFENDTVSIPKESAWFgGDVSPEGRAIGLRDRAMYKEDWLGLRVLDERGGLKFRSVPGEH 299
                   **********************************54555555668*******************************99 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.17     1e+03       3      27 ..      21      45 ..      19      57 .. 0.81
   2 !   14.7   0.0   2.4e-06     0.014      83     150 ..      83     149 ..      66     170 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.17
      DUF915  3 klksekkkeiPtifihGyggtaesl 27
                ++++  ++  P i  hG g +a+s+
  CCE26984.1 21 TYSKTTNNPLPLIIWHGLGDSASSE 45
                6788899999*******99888876 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.4e-06
      DUF915  83 kkqakwlkkvlseLkkkY...nikkfnavGhSmGglaltsYleeyaddkslPqlkklvtiggpfngiennd 150
                  + ++ ++ v ++L ++      + ++a+G+S Gg  l  Yle      + P+l+ l+t g++ ngi++  
  CCE26984.1  83 GNVTEQIQTVCTQLAHHPilsTAPAVDAIGFSQGGQFLRGYLERC----NKPPLRNLITFGSQHNGITSFR 149
                 55677777777777777511134679*********8888888766....449***************9765 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2    0.0011       6.3      17      34 ..      32      49 ..      17     152 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0011
                   EEEE--TT--SHHHHHHH CS
  Abhydrolase_2 17 viflHGlGdsghawaeaa 34
                   +i  HGlGds+ + ++a+
     CCE26984.1 32 LIIWHGLGDSASSESLAQ 49
                   677888888885444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2404.56
//
Query:       CCE26985.1  [L=252]
Description: uncharacterized protein CPUR_00457 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-25   88.4   0.0    9.7e-25   88.1   0.0    1.1  1  HAD              haloacid dehalogenase-like hydrolase
     0.0011   19.2   0.1      0.036   14.4   0.0    2.4  2  Hydrolase        haloacid dehalogenase-like hydrolase
     0.0012   18.4   0.0     0.0029   17.2   0.0    1.7  2  UMPH-1           Pyrimidine 5'-nucleotidase (UMPH-1)
     0.0078   15.6   0.0        0.2   11.0   0.0    2.1  2  Put_Phosphatase  Putative Phosphatase


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.0   2.2e-28   9.7e-25       2     188 .]      20     197 ..      19     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 2.2e-28
         HAD   2 lfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaahraa 100
                 + DfDgT +++ds++++++  l+ g +++ + ++  l+  +      ++r++++e+++++  +++e+++  l+++         ldpg++e++++ r++
  CCE26985.1  20 FTDFDGTVTTSDSNDYMTD-NLGFGVEKRTQGNKDVLFGKM------HFRDSFQEMMDSITTPYNECIELLLKKIK--------LDPGFKEFYDWSREN 103
                 89*****************.888888777777777766555......44569999***********9999999999........88************* PP

         HAD 101 GdrvvvvSgglrplvepll.aelg...adevlatelevdd........rltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpll 187
                 ++++v++Sgg+ p++++ll ++lg    +++++++++ ++         +t e   ++++v+g++k  ++r++    +++     +++ GD++sDl ++
  CCE26985.1 104 NVPIVILSGGMTPIIRALLdNLLGpgwDIQIVSNDVKPREgksinekaGWTIE--FHDDSVHGHDKSIEIRKYSSLPNRPV----MFYAGDGVSDLSAA 196
                 *******************77999**********7777667787775555555..*****************777777766....7888********99 PP

         HAD 188 r 188
                 +
  CCE26985.1 197 K 197
                 6 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   1.1       0.1   4.6e+02       4      16 ..      19      31 ..      18      51 .. 0.82
   2 !   14.4   0.0     8e-06     0.036     115     208 ..      85     198 ..      75     200 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.1
                EEEESBTTTBCHH CS
                xxxxxxxxxxxxx RF
   Hydrolase  4 vvfDkdGTLttge 16
                ++ D+dGT+tt+ 
  CCE26985.1 19 FFTDFDGTVTTSD 31
                578*******876 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 8e-06
                 HTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHH.TT.........GGGE.SEEEEHHCES.............STTTSHHHHHHHHHHHTST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.........xxxx.xxxxxxxxxx.............xxxxxxxxxxxxxxxxxxx RF
   Hydrolase 115 dplkvkpeaaeavasLkaagievvlltgdnpetaeraanq.lG.........ddyf.daviasdiet.............vakpspegkvaaireLqgk 189
                  ++k+ p+ +e+  + +++++++v+l+g+     ++++++ lG         +  +   +      +                ++  +k   ir++   
  CCE26985.1  85 KKIKLDPGFKEFYDWSRENNVPIVILSGGMTPIIRALLDNlLGpgwdiqivsN-DVkPREG-----KsinekagwtiefhDDSVHGHDKSIEIRKYSSL 177
                 5667899****************************999999998877555531.2212222.....123223555555666666999999999999855 PP

                 GGGEEEE..ESSHHHHHHHHH CS
                 xxxxxxx..xxxxxxxxxxxx RF
   Hydrolase 190 peevamV..GDgvnDaaalaa 208
                 p++ +m+  GDgv D++a+++
  CCE26985.1 178 PNRPVMFyaGDGVSDLSAAKE 198
                 555455445**********97 PP

>> UMPH-1  Pyrimidine 5'-nucleotidase (UMPH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.59   2.6e+03      88     103 ..      58      73 ..      49      83 .. 0.84
   2 !   17.2   0.0   6.4e-07    0.0029      88     193 ..      86     194 ..      76     216 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.59
      UMPH-1  88 kialrdgveelfekle 103
                 k+++rd ++e++++++
  CCE26985.1  58 KMHFRDSFQEMMDSIT 73 
                 6789999999999876 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 6.4e-07
      UMPH-1  88 kialrdgveelfekleklnvPvlifsaGlgdvleevlrqanvvysnvkvvsnfldfdedGvlk.......gfkdklihvfnknesvldgteyfdqlkkr 179
                 ki+l  g++e+++  +++nvP++i s G++ ++  +l +      ++++vsn ++  e   ++        f+d+ +h + k    ++ ++ +  l +r
  CCE26985.1  86 KIKLDPGFKEFYDWSRENNVPIVILSGGMTPIIRALLDNLLGPGWDIQIVSNDVKPREGKSINekagwtiEFHDDSVHGHDK---SIEIRK-YSSLPNR 180
                 6788899********************************999999*******987654444440000000344444443333...233333.3445666 PP

      UMPH-1 180 tnvillGDslGDls 193
                   +   GD + Dls
  CCE26985.1 181 PVMFYAGDGVSDLS 194
                 66666666666665 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   4.5e-05       0.2       4      97 ..      20     112 ..      17     138 .. 0.72
   2 ?    2.7   0.0     0.016        70     172     196 ..     183     204 ..     169     237 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.5e-05
  Put_Phosphatase   4 vfDFDktiidedsdnwvvdelpatel..feelre.tlrkglwnelmdrvlkelheqgvseadikkvlrsiplspglvelikslakkkleldlii 94 
                        DFD t+  +ds++ ++d l++  +  ++  ++  + k  + +  ++++  + +     + i+  l++i l+pg+ e       +++++ ++i
       CCE26985.1  20 FTDFDGTVTTSDSNDYMTDNLGFGVEkrTQGNKDvLFGKMHFRDSFQEMMDSITTPY--NECIELLLKKIKLDPGFKEFYDWS--RENNVPIVI 109
                      56******************9975440033333313456677788888888877655..456888999******999987776..345677777 PP

  Put_Phosphatase  95 iSD 97 
                      +S 
       CCE26985.1 110 LSG 112
                      775 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.016
  Put_Phosphatase 172 liYvGDganDlCpvlklrekDvamp 196
                      ++Y GDg  Dl + +   e+D+ ++
       CCE26985.1 183 MFYAGDGVSDLSAAK---ETDLLFA 204
                      9*********98764...4555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1884.26
//
Query:       CCE26986.1  [L=136]
Description: uncharacterized protein CPUR_00458 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-17   61.9   0.0    4.8e-17   61.5   0.0    1.2  1  eIF-1a    Translation initiation factor 1A / IF-1


Domain annotation for each model (and alignments):
>> eIF-1a  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   2.7e-21   4.8e-17       1      63 [.      25      90 ..      25      91 .. 0.94

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 2.7e-21
                EEEEEEEEEEETTTEEEEEE.SSSSBEEEEE-HHHHCT----TT-EEEEEE-TT-TT......EEEEES CS
      eIF-1a  1 gevigkViealgnnlfrVelpdngkevlaeipgkfRnkiwikrGdyVlVelspydlt......kGrIvy 63
                +++ ++V +  gnnl+ +elpd +  ++ e++++fRn+iwikrG++Vl e   y+++       G+Iv+
  CCE26986.1 25 NQFLVRVAKPQGNNLYACELPD-KTPLVLELAQRFRNTIWIKRGGFVLAER--YADGlsegraEGEIVN 90
                6999*****************6.****************************..8877889999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1029.52
//
Query:       CCE26987.1  [L=433]
Description: related to mannosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-146  487.9  12.6   2.6e-146  487.7  12.6    1.1  1  ALG3      ALG3 protein
  ------ inclusion threshold ------
       0.14   12.4   0.6       0.31   11.3   0.6    1.6  1  MAP17     Membrane-associated protein 117 kDa, PDZK1-interact


Domain annotation for each model (and alignments):
>> ALG3  ALG3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  487.7  12.6  2.9e-150  2.6e-146       2     358 .]      33     396 ..      32     396 .. 0.95

  Alignments for each domain:
  == domain 1  score: 487.7 bits;  conditional E-value: 2.9e-150
        ALG3   2 llllleavllvliikkvpYTeIDwkaYmqqvelflngerdYsklkGdtGPlvYPagfvyiysllysltdegenirlaQviFavlylltlllvlaiyaka 100
                 +l+l +avl+ lii+k+pYTeIDw+aYmqqv++f++gerdY+k++G+tGPlvYPa++vy+y++ly+lt +g+ni laQ++Favly++tl++v+ +y+ka
  CCE26987.1  33 ALWLGDAVLCSLIIWKIPYTEIDWTAYMQQVAQFVEGERDYTKMEGGTGPLVYPAAHVYTYTALYHLTGHGKNILLAQQLFAVLYMATLAVVMLCYSKA 131
                 68999********************************************************************************************** PP

        ALG3 101 kvppyvlvllvlskRlhSiyvLRlFNDcvavlllvlaillllkkrwtlgsvlyslavsvKmnvllflPalllllllkegllktlaallvialvqvllgl 199
                 kvppy+++llvlskRlhS+yvLR+FNDc+a ++++lai+ ++++rwtlgs++ys+++++Km++ll lPa++++l+l +gl ++l+ +l++a++q+l++l
  CCE26987.1 132 KVPPYIFPLLVLSKRLHSVYVLRCFNDCFAAFFFWLAIWYFQNRRWTLGSIAYSWGLGIKMSLLLSLPAVAVVLFLGKGLSGSLRLALLMAQIQLLIAL 230
                 *************************************************************************************************** PP

        ALG3 200 pFlltnpveYlkraFdlsrqFlykwtvNwrflseevFlskefalaLLllhllllllfaltrwlkskakl.........eavekkllkklkk.......k 282
                 pFl+ np+ Yl raF+lsrqF y+wtvNwr+l+e+vFlsk falaLL+lh+l+lllf++trwl+++++          +   +       +        
  CCE26987.1 231 PFLAVNPRGYLGRAFELSRQFKYEWTVNWRMLDEQVFLSKPFALALLTLHALALLLFIATRWLQPTQRPlssligpllR--GR-------SpfsredgL 320
                 *****************************************************************97543333332210..22.......133344457 PP

        ALG3 283 keskelsaelillvlftsnliGivfarsLHYQFyswyfhslplllwstklslvlkllllllieyawnvyPstelsS 358
                 + s+++++++++++++++n+iG++farsLHYQFy+++++ +p+llw+++ls+ l lll++++e awn++Pst+lsS
  CCE26987.1 321 RVSRRVTPDYVMTTILSANVIGLLFARSLHYQFYAYLAWGTPYLLWKASLSFPLLLLLVVAQEAAWNTFPSTSLSS 396
                 89999*********************************************************************98 PP

>> MAP17  Membrane-associated protein 117 kDa, PDZK1-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   3.5e-05      0.31      11      62 ..     372     422 ..     365     433 .] 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.5e-05
       MAP17  11 lllllspaeaQqatekrlkP.WlvGliAvvgFLflvfvlllvnrvWcskarae 62 
                 + lll  + aQ+a  +   P      iAvv  L+l+ v+l+ nr W+  ++++
  CCE26987.1 372 FPLLLLLVVAQEAAWN-TFPsTSLSSIAVVNVLLLI-VVLVYNRAWKPIESRD 422
                 5577888999999999.8887677778888877765.56899****9763333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3389.02
//
Query:       CCE26988.1  [L=358]
Description: probable D-amino-acid oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-37  127.8   0.9    8.8e-37  127.5   0.9    1.0  1  DAO            FAD dependent oxidoreductase
    0.00069   19.8   0.5     0.0021   18.3   0.1    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0045   16.1   0.0     0.0088   15.2   0.0    1.4  1  FAD_binding_2  FAD binding domain
  ------ inclusion threshold ------
      0.012   14.8   1.2      0.019   14.2   0.3    1.8  2  Thi4           Thi4 family
      0.048   14.2   0.1       0.12   12.9   0.1    1.7  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.5   0.9   2.5e-40   8.8e-37       2     352 .]       5     347 ..       5     347 .. 0.74

  Alignments for each domain:
  == domain 1  score: 127.5 bits;  conditional E-value: 2.5e-40
                 EEEECTSHHHHHHHHHHHHTT...EEEEESSSSTT....SSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSH CS
         DAO   2 vviiGGGiiGlstAyeLarrg...Vtllekgdiag....sgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaade 93 
                 +v++G+G+ Gl+ A+ L++ +   Vt++ k+  +g    + aS  +++ + + ++     se  r+ ++++ e+++l+e+  ++ + + ++  ++ +d 
  CCE26988.1   5 IVVVGAGVSGLTSALLLSKDKanaVTVIAKH-MPGdydiEYASPWAGANFLP-MS----TSEGSRWERQTWPEMQRLAEH-VPEAGIHFQTARIIRRDK 96 
                 8****************998778********.99945543344444433333.22....23445**************97.899***********9876 PP

                 HHHHHHHHHHHHH......HHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEEC CS
         DAO  94 eelealdkllall......leagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgvertt 186
                 + + +++   al       +   +d++ lda+   e+ p  +g+  ++ +++  +++p  ++++l  ++ ++Gv + +   vt++ ++ ++ ++     
  CCE26988.1  97 DMQGEVRPTKALFsrepwfQTMMPDYRALDAA---EI-P--AGHDSGCEFKS-VCINPSMYLHWLVGQCLRNGVVFKRS-IVTHI-HDAKRQSHT---- 182
                 54444543333334435665455577888886...33.3..36789999999.*******************9988887.99999.444554555.... PP

                 TEEEEEEEEEEE--GGGHHHHHTTCTT.TSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEE.TTSEEEEEESSEEETTCSSTSCSHH CS
         DAO 187 pgendaadavVnaaGawsdllgllkel.dlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtpr.kdgrvlvGgtadeesgdddpevdee 283
                  ge+  a  ++na+G++s++l   + + d  ++p rgq + +++        +    +   dd+++ +y ++r ++g++++Ggt+ + +++++  +d++
  CCE26988.1 183 -GEQ--ASILINATGLGSRKL---GGVnDETMTPSRGQLVLVRNEFH---TMYTASGT--DDDEAGTLYTMQRpAGGGTILGGTY-DIGNWES-VPDPN 268
                 .885..688*********977...44435688**********55443...23322222..444445555555536788******8.7777777.9**** PP

                 HHHHHHHHHHHHSGGGCG........EEEEEEEEEE.ETTSSEEEEEEE..TEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 284 didellealrklfPqlgd........vlrkwaGlrp.lpdglpligetp..gvkglylatGhsghGltlapatGkllael 352
                    ++++++ +++P+++d        v r+ aGlrp +p+g  +  e        +++++Ghsg+G++ + ++++ ++el
  CCE26988.1 269 IGLRIMQRIVDMSPEIADgkgiaglsVIRHVAGLRPyRPSGVRVESE-KldDGTWVVHNYGHSGWGYQASYGCAEGVVEL 347
                 ***************64434544444889*******55888888888.335344799******************99886 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   5.8e-07    0.0021       1      27 [.       7      34 ..       7      37 .. 0.88
   2 ?   -3.2   0.0       2.9     1e+04      32      50 ..     309     330 ..     307     335 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.8e-07
                   EE--SHHHHHHHHHHHCCTE.EEEEE-S CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagf.dvlllek 27
                   +vGaG+sGl+ A lL+k+++  v+++ k
     CCE26988.1  7 VVGAGVSGLTSALLLSKDKAnAVTVIAK 34
                   8****************98756999866 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.9
                    SGGG-EECETT...CEECTS-- CS
  NAD_binding_8  32 GGraasyevpg...vrvdygah 50 
                    G r+ s+++++   v+++yg +
     CCE26988.1 309 GVRVESEKLDDgtwVVHNYGHS 330
                    5677778774447888888855 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.5e-06    0.0088       2      70 ..       5      72 ..       5      90 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.5e-06
                   EEEE--SHHHHHHHHHHHHTTT.-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHH CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGl.kvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtl 70
                   ++V+G+G++GL++Al +++  +  v+v+ k  +    + +++ ++ a   p++  +++   +e + +  +
     CCE26988.1  5 IVVVGAGVSGLTSALLLSKDKAnAVTVIAKHMPGDYDIEYASPWAGANFLPMS-TSEG-SRWERQTWPEM 72
                   69****************977779******99977788888888777774444.3333.44666555555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   5.4e-06     0.019      20      50 ..       5      35 ..       1      39 [. 0.85
   2 ?   -3.2   0.0       1.1   3.9e+03     134     149 ..     162     177 ..     156     196 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.4e-06
                EEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 20 vvivGaGssGLtaayylakkpdlkvailers 50
                +v+vGaG sGLt+a  l+k+    v+++ ++
  CCE26988.1  5 IVVVGAGVSGLTSALLLSKDKANAVTVIAKH 35
                899****************977778888766 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
                 EEEEEEHHHHTCTTTS CS
        Thi4 134 Gvvinwtlvelahdtq 149
                 Gvv + ++v+  hd +
  CCE26988.1 162 GVVFKRSIVTHIHDAK 177
                 8888888888888654 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   3.4e-05      0.12       2      29 ..       5      33 ..       4      43 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.4e-05
                EEEECSSHHHHHHHHHHHH.TTSEEEEEE CS
   Pyr_redox  2 vvvvGgGyiglElAgalae.lgkkVtvve 29
                +vvvG+G++gl  A  l++  ++ Vtv+ 
  CCE26988.1  5 IVVVGAGVSGLTSALLLSKdKANAVTVIA 33
                89***************77699*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2539.69
//
Query:       CCE26989.1  [L=712]
Description: uncharacterized protein CPUR_00461 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.24   12.1   3.4        0.3   11.7   1.1    2.4  2  U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N


Domain annotation for each model (and alignments):
>> U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.32   5.7e+03      64      81 ..      99     116 ..      85     129 .. 0.54
   2 ?   11.7   1.1   1.7e-05       0.3      12      86 ..     193     285 ..     187     295 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.32
  U1snRNP70_N  64 ekkererkekkekkeekl 81 
                    + +  k ++e + +++
   CCE26989.1  99 LTRRKSSKRRREDHDREA 116
                  333333344444333333 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 1.7e-05
  U1snRNP70_N  12 aprpplpylppldydpekrktkkkitGvaafl..........selke..............deeeqeppektetkeekkererkekkekkeekleeal 85 
                  aprp l+y   + ++ +  +t  + +Gv++ +          +   +              d   ++ +e  e    ++er+r++ +e+ +++l +++
   CCE26989.1 193 APRPTLKYTSRT-RPSSCCRT--AASGVSEHVkqplgnrnpiQ---KdsldsreridhladDLGAKDLRELMERDNRRRERKRAQDQERVQKRLSRRV 284
                  8********999.44443444..79*******76666665550...1555556666656555555566666677777777777777777777776665 PP

  U1snRNP70_N  86 e 86 
                  e
   CCE26989.1 285 E 285
                  4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5122.33
//
Query:       CCE26990.1  [L=462]
Description: related to NUF2-outer kinetochore protein-part of Ndc80p complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-39  134.4   1.1    4.4e-39  133.8   0.0    1.9  2  Nuf2            Nuf2 family
    1.7e-33  115.2  21.4    1.7e-33  115.2  21.4    4.4  4  DHR10           Designed helical repeat protein 10 domain
     0.0037   17.1   3.2     0.0037   17.1   3.2    3.5  4  Bacillus_HBL    Bacillus haemolytic enterotoxin (HBL)
  ------ inclusion threshold ------
       0.26   11.6   2.8        2.9    8.2   1.2    3.0  3  Pro-kuma_activ  Pro-kumamolisin, activation domain
       0.43    8.0  42.5       0.64    7.5  42.5    1.3  1  DUF3584         Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> Nuf2  Nuf2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   1.2e-42   4.4e-39       2     139 .]      26     166 ..      25     166 .. 0.95
   2 ?   -2.4   0.2       1.3   4.6e+03      34      63 ..     410     425 ..     378     453 .. 0.52

  Alignments for each domain:
  == domain 1  score: 133.8 bits;  conditional E-value: 1.2e-42
        Nuf2   2 dsfplldvreIvaclqelgfevteedlakPtpefvqklyeqfleilmgiseedieqaaraale..eleepel.yedslpllillrslkrflkacgvedF 97 
                 d++++l++++++ c++++g+++t +d++kP+p ++q+++e+f+e++++ ++e++e+a+raa+e    +  ++   d+ +l+ ++ sl+r+l +cg+ dF
  CCE26990.1  26 DAIMRLSDSDVAGCISDIGIPMTVADVQKPNPAQIQQIFEWFAEVFVNSTRETVEPAMRAAAEdvCGDFSDViPPDTRNLMGFFVSLRRLLYECGIVDF 124
                 7899**********************************************************9885566666699************************ PP

        Nuf2  98 slsDllkPdpkRtrriLSaliNFirFreerseifeelleeae 139
                 s++Dl+kP++ R+++iLS+liNF+rFr++++ +++e+ +++e
  CCE26990.1 125 SFNDLYKPTHSRMNKILSYLINFVRFRQSHTTVIDEHYNKSE 166
                 *************************************99975 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
        Nuf2  34 efvqklyeqfleilmgiseedieqaaraal 63 
                   v+++               ieq ++++l
  CCE26990.1 410 MNVRRVR--------------IEQTEKKML 425
                 3333332..............333333322 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   3.9    0.0092        33      62     110 ..     154     202 ..     151     206 .. 0.88
   2 ?   -0.8  12.2      0.43   1.5e+03      60     113 ..     194     247 ..     191     251 .. 0.87
   3 !  115.2  21.4   4.7e-37   1.7e-33       3     117 .]     280     394 ..     278     394 .. 0.98
   4 ?   -1.1   3.8      0.54   1.9e+03      70     104 ..     407     441 ..     395     461 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0092
       DHR10  62 lrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaaka 110
                 +   ++e  ++++ +++++e l+   +n e++l++l +++++ +++ + 
  CCE26990.1 154 HTTVIDEHYNKSESIKMRIETLHLEKQNNEDRLQHLIHNRKAMEAEVRD 202
                 566799999****************************999998887665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.43
       DHR10  60 kelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaakarle 113
                 k+ ++++ +k+ + +e++++   l+rq e+   +le ++++  + +   +++ +
  CCE26990.1 194 KAMEAEVRDKTLRNEEVKNQLLALKRQQEKVAARLEDAKQRKGDLAMMLQQKTQ 247
                 56788999*******************************998887777777766 PP

  == domain 3  score: 115.2 bits;  conditional E-value: 4.7e-37
       DHR10   3 slaeekeelaelErkarelqakidalqvvekdlrsciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqa 101
                  l+++k+++++l+r+ar+lq+++d+++vv +d+++cik+l+ei +elak+ee+  + +++rdal+e+++++r++er e++l+rql+++ e++e+lreq+
  CCE26990.1 280 ILNNDKAHIDALDRRARALQTSTDSFSVVCADVAACIKILDEIRQELAKEEEELVRNARQRDALSERGNNARDVERAETMLRRQLAKWAERTEKLREQS 378
                 699************************************************************************************************ PP

       DHR10 102 eekreaakarleelre 117
                 ++k+++a+++++el++
  CCE26990.1 379 QAKAREAEEKMQELQA 394
                 **************96 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.54
       DHR10  70 eielrelerkeerlqrqlenaeeklerlreqaeek 104
                 +++ +    ++e+ +++  + +e +e   + a+++
  CCE26990.1 407 GKDMNVRRVRIEQTEKKMLHLKENIENEIHAAHDE 441
                 33333344455555555555555555555444443 PP

>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   1.9      0.03   1.1e+02      72     132 ..     135     197 ..     126     226 .. 0.78
   2 !   17.1   3.2     1e-06    0.0037     101     173 ..     229     301 ..     218     304 .. 0.92
   3 ?   -3.5   0.0       2.2   7.9e+03     123     147 ..     314     338 ..     311     343 .. 0.70
   4 !    4.8   2.6    0.0061        22     101     169 ..     365     433 ..     356     439 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.03
  Bacillus_HBL  72 ktiqdiigYstkFqsyyktlveav..dkkdkaellellekLqeeiqqnqkevkqlikeLkklk 132
                   +++++i+ Y   F  + +     +    +++++++ ++e L+ e q+n+   ++li + k+++
    CCE26990.1 135 SRMNKILSYLINFVRFRQSHTTVIdeHYNKSESIKMRIETLHLEKQNNEDRLQHLIHNRKAME 197
                   5778888888888888888888885444678999******************99998766655 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1e-06
  Bacillus_HBL 101 aellellekLqeeiqqnqkevkqlikeLkklklklakdsknFktdvdeltsilagdsgvisqlqneiedlqgk 173
                   ++++++ ++L  ++qq+ +e  +l +e +kl+  + +  + ++++++el +il++d+++i++l  +   lq +
    CCE26990.1 229 EDAKQRKGDLAMMLQQKTQEKATLKQESNKLRPYMLQSPSALQENLAELREILNNDKAHIDALDRRARALQTS 301
                   68889999*******************************************************9998888765 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.2
  Bacillus_HBL 123 qlikeLkklklklakdsknFktdvd 147
                   + ik L + +++lak+++++  ++ 
    CCE26990.1 314 ACIKILDEIRQELAKEEEELVRNAR 338
                   5677888888888888877766665 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0061
  Bacillus_HBL 101 aellellekLqeeiqqnqkevkqlikeLkklklklakdsknFktdvdeltsilagdsgvisqlqneied 169
                   a++ e+ ekL+e+ q +  e++++++eL++ + + +++ +   +d++     ++ +++++ +l+++ie+
    CCE26990.1 365 AKWAERTEKLREQSQAKAREAEEKMQELQAVHRQQTEEHTRKGKDMNVRRVRIEQTEKKMLHLKENIEN 433
                   78999********************************99999999999999999999999999999986 PP

>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.84     3e+03      53      80 ..      49      76 ..      46      85 .. 0.77
   2 ?    0.7   0.0      0.17   6.1e+02      53      72 ..     126     145 ..     124     156 .. 0.89
   3 ?    8.2   1.2    0.0008       2.9       8      75 ..     161     232 ..     154     253 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.84
  Pro-kuma_activ 53 vaelfapseeaidaVrnwLessgiaasr 80
                    va+  +p++++i+++ +w+ +  ++ +r
      CCE26990.1 49 VADVQKPNPAQIQQIFEWFAEVFVNSTR 76
                    6777789999999999998876655555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.17
  Pro-kuma_activ  53 vaelfapseeaidaVrnwLe 72 
                     +++l++p+ + +++++++L 
      CCE26990.1 126 FNDLYKPTHSRMNKILSYLI 145
                     7899**************95 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0008
  Pro-kuma_activ   8 raasstllpvri...gL.kqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessg 75 
                     + ++s+ +++ri    L kqnn ++l+ ++++ +  +++   k l +eev++++ + + + ++V + Le++ 
      CCE26990.1 161 HYNKSESIKMRIetlHLeKQNNEDRLQHLIHNRKAMEAEVRDKTLRNEEVKNQLLALKRQQEKVAARLEDAK 232
                     5678888888874334579***********************************************999975 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  42.5   0.00018      0.64     218     459 ..     177     423 ..     149     460 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00018
     DUF3584 218 eksrlkkqdveeWiediqalaa.iekvrpeieklqeefeqleslelrLsllkgelkadeerlaekqeevqeakaelkqqlrtledelkeaidelnqels 315
                  +++ ++++ +++i++++a++a +     + e+++++  +l+   ++++    + k+ +  la  +++  ++ka lkq+ ++l+  + ++ ++l+++l 
  CCE26990.1 177 LEKQNNEDRLQHLIHNRKAMEAeVRDKTLRNEEVKNQLLALKRQQEKVAARLEDAKQRKGDLAMMLQQKTQEKATLKQESNKLRPYMLQSPSALQENLA 275
                 566788899999999999987524444455555555555555555555555555566666677888888888889999999999999999999999999 PP

     DUF3584 316 aakaklaakeselealeeqkkkyedad......ieklkadldqlpsirseleeleeeldaltekhqdvqekyd..rrkqkikeeleeeleklkerleai 406
                 ++++ l++++++++al++++++ + +          ++a    l++ir+el++ eeel +   +  ++ e+ +  r++  ++  l ++l+k  er+e++
  CCE26990.1 276 ELREILNNDKAHIDALDRRARALQTSTdsfsvvCADVAACIKILDEIRQELAKEEEELVRNARQRDALSERGNnaRDVERAETMLRRQLAKWAERTEKL 374
                 99999999999999999998888765322222134556667789************************987652256677888999************* PP

     DUF3584 407 reekdrlkaaieealealesqlrkqleaqkeelneeekelesrlselklrlds 459
                 re+ +++  ++ee++++l++  r+q e++ ++ ++ +     r ++ ++  ++
  CCE26990.1 375 REQSQAKAREAEEKMQELQAVHRQQTEEHTRKGKDMNV----RRVRIEQTEKK 423
                 *******9**********99999777766655444332....22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2983  (0.166378); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.03u 0.34s 00:00:01.37 Elapsed: 00:00:00.48
# Mc/sec: 2875.86
//
Query:       CCE26991.1  [L=238]
Description: uncharacterized protein CPUR_00463 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.3   1.8       0.06   13.3   0.7    2.1  2  LcrG      LcrG protein


Domain annotation for each model (and alignments):
>> LcrG  LcrG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.032   5.8e+02      57      71 ..      21      35 ..      17      40 .. 0.85
   2 ?   13.3   0.7   3.3e-06      0.06      59      88 ..      50      79 ..      43      82 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.032
        LcrG 57 qeLleevkRrRsrqp 71
                 eLl+ev  +R rq 
  CCE26991.1 21 SELLQEVLSHRTRQI 35
                69*****99999996 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.3e-06
        LcrG 59 LleevkRrRsrqpqqgeqGkRrrrPtmmRG 88
                L++ev++++++q+qq+ +  + ++P+ +R 
  CCE26991.1 50 LIQEVRQQQQQQQQQPIDSSKDQHPPLLRA 79
                9*************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1765.56
//
Query:       CCE26992.1  [L=118]
Description: uncharacterized protein CPUR_00464 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-06   26.3   0.1    6.7e-06   25.9   0.1    1.1  1  UPF0139   Uncharacterised protein family (UPF0139)


Domain annotation for each model (and alignments):
>> UPF0139  Uncharacterised protein family (UPF0139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   3.7e-10   6.7e-06       3      90 ..       5      91 ..       4      96 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.7e-10
     UPF0139  3 sdprrpekakrykppalssqkedltpdymnllgmifsllglmlklkwcaWvalvcslis.fanskssd..dlkqilssfmlsvsalvmsYl 90
                +d rr++ +++y++pa ss+    + ++ + ++  + + +++ + +   W+a+v++++  +  s+ s     +  + s+++sv+al ++Y+
  CCE26992.1  5 KDMRRADLIVPYQEPAPSSD----KAEFSSTISSTLPMAAMFTRNRYIGWAAVVFTVQNwLGESQDSSknSSTPGIFSVLMSVMALGVTYM 91
                699************99999....89******************************9982455554442233445668889********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 902.06
//
Query:       CCE26993.1  [L=383]
Description: uncharacterized protein CPUR_00465 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2765.47
//
Query:       CCE26994.1  [L=234]
Description: probable TIM23 translocase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-23   83.8   5.3    1.8e-23   83.1   5.3    1.3  1  Tim17     Tim17/Tim22/Tim23/Pmp24 family
  ------ inclusion threshold ------
        1.4    8.7   3.1       0.96    9.2   0.9    1.9  2  DUF4538   Domain of unknown function (DUF4538)


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   5.3     2e-27   1.8e-23       2     109 ..     101     210 ..     100     212 .. 0.91

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 2e-27
       Tim17   2 vyktglsgvlGallGavfglvkgsrradtpapskerlreglrsvgkrgpslGknfgvvgglysgiecaleklRgkediwnsvaAGaltGallr...agp 97 
                 +y tg+++++G+ lG+++gl  g+ ++ + +p k+r++++l+ +++rgp+lG+++gvv+++y+ i++ + +lRgk+d+ n+vaAG+l+G++++   +g 
  CCE26994.1 101 CYGTGITYLAGLSLGGLWGLKDGLQKSVA-QPPKLRMNAILNGMTRRGPFLGNSAGVVAIVYNCINSSIGYLRGKHDAANTVAAGVLSGMVFKstrGGR 198
                 899*************************9.**************************************************************6564666 PP

       Tim17  98 qaaavgaiggaa 109
                 + +++g+++g +
  CCE26994.1 199 SMLISGGVVGSV 210
                 666666666655 PP

>> DUF4538  Domain of unknown function (DUF4538)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.44   3.9e+03      44      57 .]     122     135 ..     121     135 .. 0.82
   2 ?    9.2   0.9   0.00011      0.96       2      20 ..     195     213 ..     194     217 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.44
     DUF4538  44 agikqeeiQPgglk 57 
                 +g++++  QP++l+
  CCE26994.1 122 DGLQKSVAQPPKLR 135
                 78899999**9986 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00011
     DUF4538   2 rglkyvllvggvvgligla 20 
                 rg +++l+ ggvvg +++a
  CCE26994.1 195 RGGRSMLISGGVVGSVAAA 213
                 99**************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1764.37
//
Query:       CCE26995.1  [L=502]
Description: uncharacterized protein CPUR_00467 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2   11.1  13.1       0.35   10.3  13.1    1.3  1  Golgin_A5  Golgin subfamily A member 5


Domain annotation for each model (and alignments):
>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  13.1   1.9e-05      0.35      43     147 ..     264     373 ..     249     392 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 1.9e-05
   Golgin_A5  43 talsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeev.....eaelerlkeelryleeelvrskat 136
                 + ++ + +el++erd +++e  +++++  +l+++l+d+ +++ +    ++  +qel+e+ +  ++++ +      ++  + ++e+l +  ++ +++   
  CCE26995.1 264 QDKAIACQELRAERDSQQDEKMEMETRAARLKMQLEDMAQKAAEHEIIMQALMQELNEEKRLRSQERTAResvvlSSGTSAISEDLGAEDDQRKKQYRR 362
                 44667889******************************9988665555555667776666555544443300011344455666666655555555556 PP

   Golgin_A5 137 lqsrikdreke 147
                 + + ik  ++ 
  CCE26995.1 363 SAGTIKSEDAG 373
                 66666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1696  (0.0945953); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3569.01
//
Query:       CCE26996.1  [L=95]
Description: uncharacterized protein CPUR_00468 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-21   75.5   1.7    3.6e-21   75.0   1.7    1.2  1  NDUF_B12  NADH-ubiquinone oxidoreductase B12 subunit family
  ------ inclusion threshold ------
      0.013   15.1   0.0      0.015   15.0   0.0    1.1  1  PepSY_TM  PepSY-associated TM region


Domain annotation for each model (and alignments):
>> NDUF_B12  NADH-ubiquinone oxidoreductase B12 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   1.7     4e-25   3.6e-21       2      54 ..      40      91 ..      39      93 .. 0.95

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 4e-25
    NDUF_B12  2 DPWlRnEaWRykgqfskakrfkraffpGfglavaafaaavgyEhflgskkhhh 54
                DPW + E WRy+ +f++++rfk+a+ pG+g+a++af+ +++yEhf+++++hh+
  CCE26996.1 40 DPWEKAEEWRYTAHFTRWNRFKNAL-PGLGTATVAFTGYCLYEHFFMEDEHHG 91
                9************************.********************9888886 PP

>> PepSY_TM  PepSY-associated TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.7e-06     0.015     236     285 ..      35      80 ..       5      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM 236 slgdqslgakllewlypLHfGtffGlplrillfllglalaalivtGlvlW 285
                 + ++++ ++k+ ew y+ Hf ++    +r+ ++l gl++a+++ tG+ l+
  CCE26996.1  35 GQPRYDPWEKAEEWRYTAHFTRW----NRFKNALPGLGTATVAFTGYCLY 80 
                 33447889************999....********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 706.72
//
Query:       CCE26997.1  [L=495]
Description: related to POP2-required for glucose derepression [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-24   84.5   0.0    5.4e-11   42.2   0.0    2.1  2  CAF1      CAF1 family ribonuclease


Domain annotation for each model (and alignments):
>> CAF1  CAF1 family ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0     3e-15   5.4e-11       1     125 [.     120     257 ..     120     263 .. 0.89
   2 !   40.3   0.0   1.2e-14   2.1e-10     209     319 .]     280     386 ..     275     386 .. 0.70

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 3e-15
                 E-GGGHHHHHHHHHHHHHH-SEEEEEEEES-SS-----------HHHHHHHHHHHTTTB-EEEEEEEEEEEETTTTE...................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................... RF
        CAF1   1 VtrsNfkellpeilkaikeasFvAiDlEftGlsegerkesladsleerYeklkqaaesfsilqlGlscfsedkekkek..................... 78 
                 V ++N++e +  +++ +++  ++A+D+Ef G+  g+       + + +Y+ l++++   +++q+Gl++f+ed e+  +                     
  CCE26997.1 120 VWKHNLHEEMAVLRDLVDKYPYIAMDTEFPGV-VGRPMGGFRGKSDYHYQCLRANVDMLKVIQIGLTLFNEDGETPPArpahepglgnaakratnpgpf 217
                 7899***************************9.56666667778889**********************9998886668************99999999 PP

                 .EEEEEEEEEB----SS---EEEEEHHHHHHHHHTT--HHHHHTT-B CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CAF1  79 eykvqpynfylfpkeedldrefsvspsslqFLakngfdfnkliseGi 125
                  y    +nf  + k      + +++ +s++ L++ g+dfn l ++Gi
  CCE26997.1 218 PYSW-QFNFKFSLK------DDMYNEKSIESLQQAGIDFNLLERDGI 257
                 6666.567776664......779**********************99 PP

  == domain 2  score: 40.3 bits;  conditional E-value: 1.2e-14
                 EEESSTHHHHHHHHHHH.T----SSHHHHHHHHHHH-SSEEEHHHHHTSTTTTTT-S--.SHHHHHHHTTSTTS--.......--EEE-TTS------- CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CAF1 209 iVgHNgllDllflyqtf.yaeLPesleeFkaklselFPgiiDtKylakneelearleas.sLeelfeklkkenskskdassseekkesekkkaaseesa 305
                 i +H g +D+ +l + + +++LP++  +F +k++ +FP+++D+K+l+   +++ + ++  +L +l++ +++e  ++ +++s  e+ +++  k +  + a
  CCE26997.1 280 ISFHGG-YDFGYLTKLLmCTPLPNDEVDFDHKMKLHFPTTYDVKHLM---KYAIKRHNGgYL-TLIDPISSEVLNKFEHKSGLENVAET-LKIKRIGAA 372
                 555555.69****99885778**************************...444444444255.56777766666554433333333332.22245566* PP

                 --HHHHHHHHHHHH CS
                 xxxxxxxxxxxxxx RF
        CAF1 306 HeAGyDafmTGlvf 319
                 H+AG D+++TG vf
  CCE26997.1 373 HQAGSDSLLTGKVF 386
                 ************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3569.22
//
Query:       CCE26998.1  [L=543]
Description: uncharacterized protein CPUR_00470 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-43  146.3   0.1    1.1e-42  145.6   0.1    1.3  1  DDE_1          DDE superfamily endonuclease
    5.2e-17   61.3   0.0      2e-16   59.4   0.0    2.1  1  HTH_ABP1_N     Fission yeast centromere protein N-terminal do
    4.7e-07   29.8   0.6    1.4e-06   28.2   0.6    1.9  1  HTH_Tnp_Tc5    Tc5 transposase DNA-binding domain
  ------ inclusion threshold ------
      0.049   13.4   1.3       0.16   11.7   1.3    1.9  1  eIF3m_C_helix  eIF3 subunit M, C-terminal helix


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.6   0.1   2.5e-46   1.1e-42       2     175 .]     211     390 ..     210     390 .. 0.98

  Alignments for each domain:
  == domain 1  score: 145.6 bits;  conditional E-value: 2.5e-46
       DDE_1   2 erltvllcanaagsekLkplvigkaksprafkngektkkkldveyksnrkawltssifeeWLkvfdkrle..aekrkilLlldssrshe.tvel...le 94 
                  ++t+l  +n++g+ k +p+ ig   +praf    + +++l++ yk n+kaw+t  if+e+L++fd+ +   ++++ +lLl+d++ +h  +ve     +
  CCE26998.1 211 SQITALFTCNSTGTDKPPPWFIGNTIKPRAFGRNRVIPSHLECVYKHNGKAWMTGWIFREYLQWFDDYIGqsKPGKEVLLLIDNFSGHVaAVEAldlAQ 309
                 579****************************999***********************************9999***************98888789899 PP

       DDE_1  95 selqniklvflPassasllqPldqgvvselKarYrrqllqalleeqnrlskeqkkltlldalkfikkAwnavsketiksaf 175
                 s l++ik+  lP++ as++qPldqg++++ K++Y+r +l ++l+e  + +++++++ +l+a+k+   Awn v+++ti+ ++
  CCE26998.1 310 SSLKHIKIEWLPSNIASKYQPLDQGIIKAYKSQYKRRWLYYMLDEYGAGRNPHETMDILKAIKWSLTAWNMVTPQTIADCW 390
                 9*******************************************************************************9 PP

>> HTH_ABP1_N  Fission yeast centromere protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   4.6e-20     2e-16       1      60 [.      13      71 ..      12      72 .. 0.94

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 4.6e-20
  HTH_ABP1_N  1 rRkaiskeqkkaLRawafqqnprpsqkaliaWFeqeygqkisqstvSeiLSskYayLDda 60
                +R +i+  q+kaLR+++++  p ++q+ l+ WFe+++g++ s +t+Se+LS k+  LDd+
  CCE26998.1 13 KRVPITIGQRKALRKHHAEY-PSLKQTSLAVWFEEQFGHRPSPATISESLSVKFKELDDP 71
                5889*************666.99***********************************96 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.6   3.1e-10   1.4e-06       1      61 [.      87     147 ..      87     152 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 3.1e-10
                  THHHHHHHHHHHHHHC-CT---SCHHHHHHHHHHH.HHSSSCT-TT-S--CHHHHHHHHHTS CS
  HTH_Tnp_Tc5   1 spelEkaLleWirqlrergipitgelirekAqela.slaadlgepdfkaSkgWldrFkkRhg 61 
                  ++elE aLl W ++    + +it+ l+re A+ ++ +l  +  ++ + +++gWld+F kR +
   CCE26998.1  87 WQELEIALLTWRQR-FGAEDTITTDLLREVANGFWnKLLVYQRKELPDFNNGWLDKFGKRQD 147
                  89*********998.889******************99999******************986 PP

>> eIF3m_C_helix  eIF3 subunit M, C-terminal helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.3   3.6e-05      0.16       5      20 ..      84      99 ..      83     102 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.6e-05
  eIF3m_C_helix  5 keQWqeLetrLdaWks 20
                   ke+WqeLe  L +W+ 
     CCE26998.1 84 KEHWQELEIALLTWRQ 99
                   89************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.20s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4164.98
//
Query:       CCE26999.1  [L=169]
Description: uncharacterized protein CPUR_00471 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1313.53
//
Query:       CCE27000.1  [L=405]
Description: related to macrophage erythroblast attacher [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-35  122.4   0.0    2.3e-35  121.6   0.0    1.4  1  CLTH      CTLH/CRA C-terminal to LisH motif domain
    1.8e-05   24.5   0.1    9.8e-05   22.2   0.0    2.1  2  LisH      LisH
  ------ inclusion threshold ------
       0.14   11.2   0.0       0.26   10.4   0.0    1.5  1  LisH_2    LisH


Domain annotation for each model (and alignments):
>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.0   3.9e-39   2.3e-35       1     147 [.     163     308 ..     163     309 .. 0.95

  Alignments for each domain:
  == domain 1  score: 121.6 bits;  conditional E-value: 3.9e-39
        CLTH   1 sikerqkIiklilegdlseaiewinenkpellesnsnLeFkLkllqfielirg..ktkdieealeyarenlefendehlkelekamsLLafsdpeskel 97 
                 +++++ +I++++l g+++ea++w+ +nk+el+++ s+LeF+L+ +q+ielir   k +++ ea+++a+++l ++  ++  e++++ +LLaf++ e   +
  CCE27000.1 163 TFINMSRIRESLLGGSITEALAWCTDNKKELRKMESKLEFMLRIQQYIELIRTqsK-EKLVEAIAHAKKYLVPYWPTFPSEVQQVCGLLAFPPGEA--A 258
                 589*************************************************6533.77************888888****************877..8 PP

        CLTH  98 ssplknlldpsrrekvakefnsailkllglskespLeillsaglsalktl 147
                 s  +++l++psr+e++a++f+sa  +ll l+  + L+++ls+glsalkt 
  CCE27000.1 259 SVAYRDLYKPSRWEELADLFTSAHNNLLALPAVPLLHVALSSGLSALKTP 308
                 99*********************************************985 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.38   2.3e+03      16      27 .]      43      54 ..      37      54 .. 0.80
   2 !   22.2   0.0   1.6e-08   9.8e-05       3      26 ..     129     152 ..     128     152 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.38
                -HHHHHHHHHHT CS
        LisH 16 yeetAeaFekEa 27
                 +++ ++++kE+
  CCE27000.1 43 DTSALKTLLKES 54
                567999*****8 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHHHHCT-HHHHHHHHHH CS
        LisH   3 LNrLIydYLvkeGyeetAeaFekE 26 
                 L+rL+ dYL+ +G++ tA+ ++ E
  CCE27000.1 129 LDRLVADYLLRHGFNRTASQMADE 152
                 9******************99877 PP

>> LisH_2  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   4.3e-05      0.26       3      15 ..     131     143 ..     129     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.3e-05
      LisH_2   3 sLvaeYLqsqgYn 15 
                  Lva+YL ++g+n
  CCE27000.1 131 RLVADYLLRHGFN 143
                 59**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       973  (0.0542696); expected 358.6 (0.02)
Passed bias filter:                      679  (0.0378716); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3007.45
//
Query:       CCE27001.1  [L=331]
Description: probable CBF1-centromere binding factor 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-12   46.7   0.3    4.5e-12   45.7   0.3    1.6  1  HLH           Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
        0.3   11.0  17.1       0.37   10.7  17.1    1.2  1  TFIIA         Transcription factor IIA, alpha/beta subunit
        3.2    6.9  21.4        4.5    6.4  21.4    1.2  1  Med3          Mediator complex subunit 3 fungal
        7.4    6.7   9.3        1.9    8.6   3.4    2.3  2  Antirestrict  Antirestriction protein


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.3     1e-15   4.5e-12       1      53 []     214     262 ..     214     262 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHCSTCSTTSS-STHHHHHHHHHHHHHHHH CS
         HLH   1 rraahnerErrRRdriNsaleeLrellPslppskKlsKaeiLekAveYIkhLq 53 
                 r+ +h+e+ErrRR+ iN++++eL +++P    +   +K +iL+++v +I++L+
  CCE27001.1 214 RKDNHKEVERRRRETINEGINELAKIVP----GCEKNKGSILQRTVSFISQLK 262
                 7899************************....34459**************95 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  17.1   8.4e-05      0.37     129     305 ..      56     234 ..       4     324 .. 0.38

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.4e-05
       TFIIA 129 pagvtlqtasgqlykvnv.qasgaqqiaaqplqqvvqqsqgsaaqssvaalqaq.sqqaqalaepqqqlekq.................qqqqqqqqqq 208
                     t+  a   ++ v+v   ++ q++aa +++   + +++s ++++++a++a+   +++++a+ +    +                  +++qqqqq++
  CCE27001.1  56 AIEATHAAAA-AANGVSVaDFNALQAAAADHAEAA-EAANASDTANTINAVNAAsATSTAQAALGMY---PTlhvppsteeqfaaqavaEEEQQQQQHH 149
                 2222222222.334455532222233332222222.3344444444455544442111111111111...11233334432232222322223333333 PP

       TFIIA 209 qqqqqvqqqqqe........esqqaqqasqeqvagsqvessqtdgaedaleeespv....legelsaeeeagaqkeelsreeidrireealkakeleke 295
                 q+++ ++ ++          +                   s+ d++  al+  +p+    + g  sa +++ + k  +++ee +++     k++++e e
  CCE27001.1 150 QHSTEQNFHHTDlplpamidP-------------------STGDQQ--ALNGLPPAgghrYSGSASAANSNSN-KPAVGSEEWHKM----RKDNHKEVE 222
                 333333333332444443331...................222222..2333233333333333333332222.233344444444....222222222 PP

       TFIIA 296 skkkkr.aee.s 305
                 ++++++ +e  +
  CCE27001.1 223 RRRRETiNEGiN 234
                 222222122111 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  21.4     0.001       4.5     137     258 ..      57     192 ..      40     214 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.001
        Med3 137 vvnstpssaastPtttatP...gantktaakslpapnata...tigtptnsaaaaattatttssqakkPrkPrqtkkaaakaaakaqaqaqaqaqaqqq 229
                 + ++  ++aa+  ++ a     +a++  +a+++ a na+    ti++   +aa+a++ta+++         P  t   + +a+a+a + +q+q + q++
  CCE27001.1  57 IEATHAAAAAANGVSVADFnalQAAAADHAEAAEAANASDtanTINA--VNAASATSTAQAALGMYPTLHVPPSTEE-QFAAQAVAEEEQQQQQHHQHS 152
                 33444444444444443330002333333333333333331114444..4666666666666555555567777777.688999999999999999999 PP

        Med3 230 vlanpnqvqtPiaanamnnmn.....amraalp.........n 258
                    n  +   P++a  m +       a+   lp          
  CCE27001.1 153 TEQNFHHTDLPLPA--MIDPStgdqqAL-NGLPpagghrysgS 192
                 77788888889888..443332333233.33444555665443 PP

>> Antirestrict  Antirestriction protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.4   0.00042       1.9      39      89 ..      43      93 ..      39      96 .. 0.93
   2 ?    1.3   0.5     0.078   3.5e+02      26      80 ..      96     151 ..      91     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00042
  Antirestrict 39 gevSadAaGiivtllalshlaeeteedalaeryerLreyalqHpeaaaIlr 89
                  +++Sad+a  i  +++  h a+ +++   +  +++L++ a++H+eaa+  +
    CCE27001.1 43 ATMSADTAAFIENAIEATHAAAAAANGVSVADFNALQAAAADHAEAAEAAN 93
                  68********************************************98665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.078
  Antirestrict  26 erlrlvvkengfegevSad.AaGiivtllalshlaeeteedalaeryerLreyalq 80 
                   ++ + +++ n  +++  a+ A+G+  tl     ++e+++ +a+ae+ ++ +++ ++
    CCE27001.1  96 DTANTINAVNAASATSTAQaALGMYPTLHVPPSTEEQFAAQAVAEEEQQQQQHHQH 151
                   5556667777777766666156******9999999999999999998887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2302  (0.128395); expected 358.6 (0.02)
Passed bias filter:                      714  (0.0398237); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2310.56
//
Query:       CCE27002.1  [L=632]
Description: uncharacterized protein CPUR_00474 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-41  139.7   3.4    7.7e-41  139.0   3.4    1.3  1  DUF2841    Protein of unknown function (DUF2841)
    0.00029   21.6   0.3     0.0012   19.6   0.3    2.0  1  Chorion_2  Chorion family 2


Domain annotation for each model (and alignments):
>> DUF2841  Protein of unknown function (DUF2841)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   3.4   8.6e-45   7.7e-41       2     123 ..     229     373 ..     228     374 .. 0.96

  Alignments for each domain:
  == domain 1  score: 139.0 bits;  conditional E-value: 8.6e-45
     DUF2841   2 iedeeeveeyyerafkalqqlnckviakawikliepkkqvkypYnggektkPeWWPk........evrhkePdhlkkeerirLlvhilrelaese.... 88 
                 ++d+++++++ye++fk++qq++ck iakaw+k++epkkq+++pY+g+++++PeWWPk        +vrhkePdhl k+er++Ll+hil  + +++    
  CCE27002.1 229 LSDNDALWTFYEQRFKNCQQTACKLIAKAWVKAVEPKKQSTHPYTGSDEKAPEWWPKpwgttkedKVRHKEPDHLYKRERVHLLAHILSLIIKPSeeqh 327
                 68999*************************************************************************************999989999 PP

     DUF2841  89 ......eitvekLeeatkev.....krqikpeerkeiLkeiykvak 123
                       ++tv+kLee+t e+      +  ++++++ +L ei+kva+
  CCE27002.1 328 cdmrklGLTVKKLEETTYEAlssffMECDTNAKKRPYLAEIFKVAR 373
                 ******9************99999866788999999********97 PP

>> Chorion_2  Chorion family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   1.3e-07    0.0012      23      83 ..     172     231 ..     150     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.3e-07
   Chorion_2  23 iygrgrG.nrgYgrsvesgrrygdsspsdseaislaklalAapeagsyeveaeprrrikgsy 83 
                 + ++ +G  rgY r+  s++ y d s+s ++++ +a l ++a+   ++  +  prrrik s 
  CCE27002.1 172 HKKGSHGrTRGYERR--SSSFYKDWSGSARQSRKRARLHSSAIGDDEPPIDVTPRRRIKLSD 231
                 34558999999***9..9****************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4795.37
//
Query:       CCE27003.1  [L=1548]
Description: related to Ycf1p, Yor1p, rat organic anion transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-84  281.9  30.6    9.9e-46  156.6   6.1    2.7  2  ABC_membrane    ABC transporter transmembrane region
    6.8e-50  169.1   0.0    7.1e-30  104.3   0.1    2.5  2  ABC_tran        ABC transporter
    1.1e-09   38.1   2.9     0.0053   16.2   0.1    4.5  3  SMC_N           RecF/RecN/SMC N terminal domain
    5.1e-06   26.6   0.4       0.21   11.7   0.1    3.1  3  MMR_HSR1        50S ribosome-binding GTPase
    0.00016   21.6   0.1       0.26   11.2   0.0    2.6  2  RsgA_GTPase     RsgA GTPase
    0.00036   20.8   0.6     0.0014   18.9   0.6    2.0  1  UPF0093         Uncharacterised protein family (UPF0093)
     0.0028   18.1   0.6       0.13   12.6   0.2    2.7  2  AAA_16          AAA ATPase domain
     0.0041   16.8   0.4        1.3    8.8   0.0    2.7  2  AAA_29          P-loop containing region of AAA domain
     0.0042   17.2   1.2        0.3   11.1   0.1    2.6  2  Dynamin_N       Dynamin family
  ------ inclusion threshold ------
      0.011   15.5   0.3        3.7    7.3   0.0    2.7  3  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
      0.025   14.7   0.5       0.92    9.5   0.0    2.4  2  DUF87           Helicase HerA, central domain
      0.047   13.4   0.2        2.1    8.0   0.0    2.2  2  AAA_15          AAA ATPase domain
      0.047   14.2   0.0        6.5    7.2   0.0    2.4  2  AAA_23          AAA domain
      0.078   12.4   3.2      0.053   12.9   0.2    2.2  2  ABC_membrane_2  ABC transporter transmembrane region 2
      0.091   13.0   0.6         31    4.8   0.1    3.2  3  AAA_22          AAA domain
       0.17   11.6   1.5        3.2    7.4   0.0    2.9  2  AAA_30          AAA domain
       0.35   10.8   1.3        1.2    9.0   0.1    2.4  2  NACHT           NACHT domain
        8.5    6.5   8.1        4.7    7.3   2.8    2.6  2  PsbX            Photosystem II reaction centre X protein (Psb


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   8.1   2.8e-43   2.8e-40       3     274 .]     315     590 ..     313     590 .. 0.97
   2 !  156.6   6.1     1e-48   9.9e-46       3     273 ..     987    1257 ..     985    1258 .. 0.95

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 2.8e-43
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHCSTHHHHHH CS
  ABC_membrane   3 liillailagvlsplfplvlgrildtlldkgdpet...ealnvysllllllglaqfilallqsyll..nvtgerlskrlrrklfkkilrqpmsffdt 94 
                   ++ ++++ +++++ ++p +l  +l+++ +++ + +     +   ++++ +++  +f+++++++y+   + tg+r++  l +++++k lr++ +  ++
    CCE27003.1 315 VAAFFKVGNDMAQYIQPQLLRLLLNWVKSYSITPDdpqPVIQGAAIAFSMFACSVFQTTMVHQYFQksYETGMRIKGGLGSMIYRKSLRLSNEGRSS 411
                   6789**************************7777777678889999999999**************9666*************************** PP

                   SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH CS
  ABC_membrane  95 nsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgir 191
                   +++G++++ ++ d+++l+d++++ + +++ +++++++ + ++ +lgw++ ++++++++++++ + ++a+i+k+l+k+++k+ + +s++++E++++++
    CCE27003.1 412 KTTGDIVNYMAVDAQRLSDLTQFLHQVWSAPFQIIICMVSLYNLLGWSM-MAGIVVMIIMMPAQGWVARIMKNLQKDQMKNKDARSRLINEIVTNMK 507
                   ***********************************************97.*********************************************** PP

                   HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 192 tVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                    +k++++ ++f +k +  ++e + ++++++ a+ ++  +t+  + +++++ ++  ++l +++ l+ + ++  l+lf++l+++l
    CCE27003.1 508 SIKLYAWGAAFMNKLNYVRNEQELKNLRRIGATQAFANFTWNTAPFFVSCSTFTVYVLTQDKPLTTDIIFPALALFNLLTFPL 590
                   *******************************************************************************9886 PP

  == domain 2  score: 156.6 bits;  conditional E-value: 1e-48
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHCSTHHHHHHSC CS
  ABC_membrane    3 liillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyll.nvtgerlskrlrrklfkkilrqpmsffdtns 96  
                    +++ ++++a+ + +  +++l+++ ++  d+g++++  + +y+ +++++g+++++l+++q+ +l + +++ +s++l+ ++ ++i+r pmsffdt++
    CCE27003.1  987 VYMTALLAAQSAGIGGSFWLKSWSEHNEDTGSNDD--VGKYIGIYFAFGIGSSLLTVVQTLILwIFCSIEASRKLHERMANAIFRSPMSFFDTTP 1079
                    56778899999999*********************..***********************998799***************************** PP

                    HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH CS
  ABC_membrane   97 vGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgir 191 
                    +G++l+r+++d+++++++l++ + ++f +++  + +l+v+ ++ + ++ ++l++++ +++++ ++ +++++lk+ ++ ++++++++++Esl g+ 
    CCE27003.1 1080 TGRILNRFSSDIYRVDEVLARVFNMLFVNVARSFFTLGVISFSTPAFMALILPLALTYYWIQRYYLRTSRELKRLDSVSRSPIYAHFQESLGGVS 1174
                    *********************************************************************************************** PP

                    HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.TSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane  192 tVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvis.gelsvgdlvvflslfailfga 273 
                    t++af+ +++f+ + e  ++ +++a++ +  an++l ++++++g +++++a+ +++  v++ + l  g++   +s++ +++++
    CCE27003.1 1175 TIRAFRQQQRFVLENEWRVDANLRAYYPSVSANRWLAVRLEFIGGVVILAAAGLAIISVSNrSGLREGTVGLAMSYALQITTS 1257
                    ****************************************************9999999996677777777788888787776 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   6.3e-20   6.3e-17       1     134 [.     656     788 ..     656     791 .. 0.91
   2 !  104.3   0.1   7.1e-33   7.1e-30       1     137 []    1324    1472 ..    1324    1472 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 6.3e-20
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren............esdeeiek 87 
                 lk+++++ ++ge+  +vG+ GaGKS++l++++g l + +G+              ++r  +++ +q+p + + + v+en            ++++++ +
  CCE27003.1 656 LKDIDFTSYKGELSCVVGRVGAGKSSFLQTILGDLWKVKGSA-------------EVRGTVAYASQQPWILNAT-VKENiifgyrydadfyAKTVKACA 740
                 799*************************************98.............899***********99999.*********999999877777777 PP

                 HHHHS.TTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alskl.glkelkdtvvksspssLSgGqkqrvalarallkkpkllllDE 134
                 +l+ + +l++ ++tvv++++ sLSgGqk rv+lara+  +++++llD+
  CCE27003.1 741 LLDDFaQLPDGDETVVGERGISLSGGQKARVSLARAVYARADIYLLDD 788
                 77766245667899999999***************************8 PP

  == domain 2  score: 104.3 bits;  conditional E-value: 7.1e-33
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsk 91  
                  lkn++l++k  ek+++vG++GaGKS+L  +l +l +p+ G+i +d+ +++ + l  lr++++++pq++ lf+++ vr+n      ++d e+  +l++
  CCE27003.1 1324 LKNINLDIKSREKIGVVGRTGAGKSSLTLALFRLIEPATGNIDIDQVNTSGIGLLDLRRRLAIIPQDAALFEGT-VRDNldpghvHDDTELWSVLEH 1419
                  79************************************************************************.**********9*********** PP

                  STTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   92 lglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                   +lke         + ++++++s+LS+Gq+q v+lara+l+ +++l+lDE+ta
  CCE27003.1 1420 ARLKEhivemdgGLEAKINEGGSNLSQGQRQLVSLARAMLTPSNILVLDEATA 1472
                  ****999999997777778999*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1    0.0011       1.1      26      81 ..     668     719 ..     653     807 .. 0.48
   2 ?    4.3   0.0     0.023        23      26      48 ..    1336    1357 ..    1322    1372 .. 0.80
   3 !   16.2   0.1   5.3e-06    0.0053     135     210 ..    1425    1514 ..    1396    1521 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0011
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaevei 81 
                 ++++vG+ G+GKs++l+ i   LG+   k   s++++  + + ++++ + +a+v+ 
  CCE27003.1 668 LSCVVGRVGAGKSSFLQTI---LGD-LWKVKGSAEVRGTVAYASQQPWILNATVKE 719
                 5666666666666666666...552.222222344444444445555555555543 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.023
                  EEEEEESTTSSHHHHHHHHHHHC CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   26 ftaivGpNGSGKsnlldAilFvL 48  
                     +vG+ G+GKs+l+ A+ F L
  CCE27003.1 1336 KIGVVGRTGAGKSSLTLAL-FRL 1357
                  4579************999.766 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 5.3e-06
                  T.................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH.HHCTTSEEEEE-SSHHHCCC-SCEEE CS
                  x.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  135 e.................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk.eksknaQfivislreemlekadklvg 210 
                  +                 +LS G+++Lv+la      +  p+ + +lDe  aa D +  + +   l+     n  +i +++r +++ ++d++v 
  CCE27003.1 1425 HivemdggleakineggsNLSQGQRQLVSLA----RAMLTPSNILVLDEATAAVDVETDAMLQATLRsPLFANRTIITVAHRLNTIIDSDRVVV 1514
                  4444445555555555559*********986....5699***********************9999945788899999******9999999875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00032      0.31       3      26 ..     670     693 ..     669     714 .. 0.81
   2 !   11.7   0.1   0.00021      0.21       1      21 [.    1336    1356 ..    1336    1372 .. 0.85
   3 ?   -1.3   0.0       2.2   2.2e+03      25      57 ..    1498    1529 ..    1484    1545 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
                 EEEESTTSSHHHHHHHHHTSTEEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaiv 26 
                 ++vGr  +GKS+++++++g+  +v
  CCE27003.1 670 CVVGRVGAGKSSFLQTILGDLWKV 693
                 69****************984444 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00021
                  EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1    1 evaivGrpNvGKStLinaltg 21  
                  ++++vGr+ +GKS+L  al++
  CCE27003.1 1336 KIGVVGRTGAGKSSLTLALFR 1356
                  699************999986 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.2
                  EESSSTTSSSSEEEEEEEETTEEEEEEECGGCS CS
    MMR_HSR1   25 ivsdkpgtTrdinegrvklkgkeielvDtpGli 57  
                   v+++  t +d  +  v l++ e++  DtpG +
  CCE27003.1 1498 TVAHRLNTIIDSDRVVV-LDQGEVVEFDTPGAL 1529
                  44555555555555544.566799999****54 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00026      0.26      85     122 ..     651     689 ..     631     703 .. 0.81
   2 !    7.5   0.0    0.0036       3.6     100     130 ..    1335    1365 ..    1306    1372 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
                  TTHTTHHHHHHH.CTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  85 ktkegleelkel.lkdktsvlvGqSGvGKStLinallpe 122
                  +tke l+++     k+++s++vG  G+GKS+++ ++l++
   CCE27003.1 651 ETKEVLKDIDFTsYKGELSCVVGRVGAGKSSFLQTILGD 689
                  5667777777551566*******************9987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0036
                   SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  100 ktsvlvGqSGvGKStLinallpelelktgev 130 
                   + + +vG +G+GKS+L  al    e +tg++
   CCE27003.1 1335 EKIGVVGRTGAGKSSLTLALFRLIEPATGNI 1365
                   455689**********999988877777776 PP

>> UPF0093  Uncharacterised protein family (UPF0093)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.6   1.4e-06    0.0014      48     131 ..     423     504 ..     406     510 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.4e-06
     UPF0093  48 imerrLlkiimtpamiltlvlGllllalaeglvalssgW.lhvKlllvllllayhlvlaklrkklaagentksekfyrilNEvpt 131
                 + ++rL  +     +  ++ + + +++++ +l+ l  gW +++ ++++++++  ++++a+++k+l++++ ++++   r++NE++t
  CCE27003.1 423 VDAQRLSDLT--QFLHQVWSAPFQIIICMVSLYNLL-GWsMMAGIVVMIIMMPAQGWVARIMKNLQKDQMKNKDARSRLINEIVT 504
                 5566666663..334444555555666666676665.7736668888899999******************************98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.16   1.6e+02      25      46 ..     667     688 ..     649     723 .. 0.79
   2 !   12.6   0.2   0.00013      0.13      28     161 ..    1338    1488 ..    1321    1497 .. 0.63

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.16
      AAA_16  25 elvllsGesGvGKsslvrellr 46 
                 el  ++G  G GKss ++++l 
  CCE27003.1 667 ELSCVVGRVGAGKSSFLQTILG 688
                 55669************99984 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00013
      AAA_16   28 llsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde...............aesaeleawrekleeala.av 108 
                   ++G  G GKssl  +l+r +e +     +g+ d  + +++ + l+++    + l+ + ++               +  ++ e w+   +++l+  +
  CCE27003.1 1338 GVVGRTGAGKSSLTLALFRLIEPA-----TGNIDIDQVNTSGIGLLDLR---RRLAIIPQDaalfegtvrdnldpgHVHDDTELWSVLEHARLKeHI 1426
                  599***************877766.....66666665554433333333...333333333333555433333334444455555555555555855 PP

      AAA_16  109 pelagaea.......srllellkrllallsrderp.lvlvlDdlqwadeaslql.laaLlrl 161 
                   e++g ++       s l +  ++l++l++    p  +lvlD++  a +   ++ l+a+lr+
  CCE27003.1 1427 VEMDGGLEakineggSNLSQGQRQLVSLARAMLTPsNILVLDEATAAVDVETDAmLQATLRS 1488
                  5555555567778885555555555555555555557******9988777777779998886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.018        17      23      39 ..     666     683 ..     655     688 .. 0.79
   2 !    8.8   0.0    0.0013       1.3      18      50 ..    1330    1362 ..    1324    1369 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.018
      AAA_29  23 g.atlltGpsGsGKSTll 39 
                 g    ++G+ G+GKS++l
  CCE27003.1 666 GeLSCVVGRVGAGKSSFL 683
                 557789**********98 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0013
      AAA_29   18 eidlkgatlltGpsGsGKSTllDAiqalLvpak 50  
                  +i+ ++ + ++G++G+GKS+l  A+  l+ pa+
  CCE27003.1 1330 DIKSREKIGVVGRTGAGKSSLTLALFRLIEPAT 1362
                  5666667889***********999999888876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1    0.0003       0.3       3      21 ..     671     689 ..     670     702 .. 0.88
   2 ?    4.3   0.1     0.039        39       1      15 [.    1337    1351 ..    1337    1357 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
                 EEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlge 21 
                 vvG + +GKSS+l  +lg+
  CCE27003.1 671 VVGRVGAGKSSFLQTILGD 689
                 9****************97 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.039
                  EEEEEBTTTTHHHHH CS
   Dynamin_N    1 iavvGsqSsGKSSvl 15  
                  i vvG + +GKSS+ 
  CCE27003.1 1337 IGVVGRTGAGKSSLT 1351
                  79***********96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0037       3.7       2      20 ..     669     687 ..     668     726 .. 0.87
   2 ?    5.5   0.1     0.013        13       3      33 ..    1338    1362 ..    1337    1407 .. 0.75
   3 ?   -3.6   0.0       7.5   7.5e+03     236     265 ..    1443    1469 ..    1421    1469 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0037
      AAA_21   2 nvliGpNgsGKSnLLdald 20 
                  +++G+ g+GKS++L+++ 
  CCE27003.1 669 SCVVGRVGAGKSSFLQTIL 687
                 689**************94 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.013
      AAA_21    3 vliGpNgsGKSnLLdaldllarldrdveglt 33  
                  +++G+ g+GKS+L  al  l      +e+ t
  CCE27003.1 1338 GVVGRTGAGKSSLTLALFRL------IEPAT 1362
                  68***************666......33333 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 7.5
      AAA_21  236 elSdGtkrllalltallralkkgsllliDE 265 
                  +lS+G+++l  l+ a+l       +l++DE
  CCE27003.1 1443 NLSQGQRQLVSLARAMLTPS---NILVLDE 1469
                  589******88888888766...8899998 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.12   1.2e+02      27      49 ..     670     692 ..     664     700 .. 0.85
   2 ?    9.5   0.0   0.00093      0.92      16      45 ..    1329    1356 ..    1324    1367 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.12
       DUF87  27 AilgsTGsGKSntvavLleelle 49 
                 +++g+ G+GKS +   +l  l +
  CCE27003.1 670 CVVGRVGAGKSSFLQTILGDLWK 692
                 799**************988875 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00093
       DUF87   16 ldlnklvtrHlAilgsTGsGKSntvavLle 45  
                  ld+++  ++ ++++g+TG+GKS ++  L++
  CCE27003.1 1329 LDIKS--REKIGVVGRTGAGKSSLTLALFR 1356
                  55533..5889***********99877765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0021       2.1      16      43 ..     658     686 ..     654     689 .. 0.89
   2 ?    3.1   0.0     0.063        63      14      48 ..    1324    1359 ..    1323    1391 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0021
      AAA_15  16 dveidlsee...ltvliGkNnsGKSsileal 43 
                 d  id+ ++   l++++G+ ++GKSs+l+ +
  CCE27003.1 658 D--IDFTSYkgeLSCVVGRVGAGKSSFLQTI 686
                 4..899988899****************987 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.063
      AAA_15   14 lkdveidlsee.ltvliGkNnsGKSsilealdlFln 48  
                  lk++ +d+++     ++G+ ++GKSs++ al  +++
  CCE27003.1 1324 LKNINLDIKSReKIGVVGRTGAGKSSLTLALFRLIE 1359
                  678888888777999*************99976665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0065       6.5      14      40 ..     658     687 ..     650     707 .. 0.86
   2 ?    4.1   0.0     0.057        56      19      38 ..    1334    1353 ..    1320    1362 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0065
      AAA_23  14 eidF...skgltlItGpNGaGKTTildAik 40 
                 +idF   +  l +++G  GaGK+++l+ i 
  CCE27003.1 658 DIDFtsyKGELSCVVGRVGAGKSSFLQTIL 687
                 6999887778****************9885 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.057
      AAA_23   19 kgltlItGpNGaGKTTildA 38  
                  +    ++G +GaGK+++  A
  CCE27003.1 1334 REKIGVVGRTGAGKSSLTLA 1353
                  5556789*********9655 PP

>> ABC_membrane_2  ABC transporter transmembrane region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   5.4e-05     0.053     128     190 ..     421     492 ..     410     513 .. 0.79
   2 ?   -3.1   0.2       4.1     4e+03     132     172 ..    1103    1142 ..    1086    1152 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.4e-05
  ABC_membrane_2 128 t.......sslssLlsglvkpildvilftfiLwslsgtlgl..lllllyvllatvilriigpplgklvaeee 190
                             s+l+++l ++ ++ +++i++++ L++l+g+  +  ++++++++ a+ ++ +i+++l k  ++++
      CCE27003.1 421 MavdaqrlSDLTQFLHQVWSAPFQIIICMVSLYNLLGWSMMagIVVMIIMMPAQGWVARIMKNLQKDQMKNK 492
                     44455444678999*************************995556666677778899999999988777765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.1
  ABC_membrane_2  132 ssLlsglvkpildvilftfiLwslsgtlgllllllyvllat 172 
                      + L+ +++++++++ +++f    ++    + l+l+y+ ++ 
      CCE27003.1 1103 NMLFVNVARSFFTLGVISFSTPAFMALILP-LALTYYWIQR 1142
                      556777777777777777777666665555.5555555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.031        31       7      28 ..     668     689 ..     663     711 .. 0.82
   2 ?    4.2   0.0     0.049        48      10      28 ..    1339    1357 ..    1331    1385 .. 0.85
   3 ?   -0.9   0.0       1.9   1.9e+03      81     109 ..    1446    1482 ..    1427    1497 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.031
      AAA_22   7 ilvvtGesGtGKTtllrrlleq 28 
                 + +v+G +G+GK+  l+++l  
  CCE27003.1 668 LSCVVGRVGAGKSSFLQTILGD 689
                 5689***********9998755 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.049
      AAA_22   10 vtGesGtGKTtllrrlleq 28  
                  v+G +G+GK+ l   l++ 
  CCE27003.1 1339 VVGRTGAGKSSLTLALFRL 1357
                  89*********99888875 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.9
      AAA_22   81 aleqalrarav.....ielliiDEaqh.lr..seeal 109 
                  + +++l + a+       +l++DEa   ++  ++++l
  CCE27003.1 1446 QGQRQLVSLARamltpSNILVLDEATAaVDveTDAML 1482
                  445555555555566777******9875545435554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0032       3.2      17      51 ..     665     701 ..     659     788 .. 0.73
   2 ?    1.2   0.7      0.26   2.5e+02      23      46 ..    1339    1363 ..    1331    1488 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0032
      AAA_30  17 gdrvavltGpAGtGKttalkal.reaweaag.grvig 51 
                 +  +++++G+ G+GK+  l+++  ++w+ +g  +v g
  CCE27003.1 665 KGELSCVVGRVGAGKSSFLQTIlGDLWKVKGsAEVRG 701
                 56699***************99899999997644433 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.26
      AAA_30   23 ltGpAGtGKttalkalreaweaa.g 46  
                  ++G+ G+GK+ +  al +++e a g
  CCE27003.1 1339 VVGRTGAGKSSLTLALFRLIEPAtG 1363
                  6788888888777777666665533 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1    0.0012       1.2       2      28 ..     668     694 ..     667     706 .. 0.86
   2 ?   -1.1   0.1       1.5   1.5e+03       5      20 ..    1339    1354 ..    1336    1363 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
                 CEEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegk 28 
                 l+++ G+ G GK+ +lq +  ++++ k
  CCE27003.1 668 LSCVVGRVGAGKSSFLQTILGDLWKVK 694
                 689****************98888765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.5
                  EEC-TTTCHHHHHHHH CS
       NACHT    5 lqGeaGsGKTtLlqkl 20  
                  + G+ G GK+ L   l
  CCE27003.1 1339 VVGRTGAGKSSLTLAL 1354
                  78********997665 PP

>> PsbX  Photosystem II reaction centre X protein (PsbX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2      0.46   4.6e+02       4      21 ..     451     468 ..     450     475 .. 0.78
   2 ?    7.3   2.8    0.0048       4.7      13      32 ..    1216    1235 ..    1216    1236 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.46
                 HHHHHH.HHHHHHH.HHHH CS
        PsbX   4 SLaNfl.lSLvaGalvVvi 21 
                 SL N+l +S++aG  vV i
  CCE27003.1 451 SLYNLLgWSMMAGI-VVMI 468
                 88899989*99999.5554 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0048
                  HHHH.HHHHHHHHHHHHHHH CS
        PsbX   13 vaGalvVvipiaaaLifvSq 32  
                  + G++v+++++  a+i vS+
  CCE27003.1 1216 FIGGVVILAAAGLAIISVSN 1235
                  579*9**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.02u 0.29s 00:00:01.31 Elapsed: 00:00:00.48
# Mc/sec: 9793.81
//
Query:       CCE27004.1  [L=295]
Description: uncharacterized protein CPUR_00476 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-79  266.8   0.0    2.2e-79  266.6   0.0    1.0  1  DUF1749        Protein of unknown function (DUF1749)
    3.2e-09   37.7   0.0      4e-09   37.4   0.0    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.7e-07   30.8   0.0    3.5e-07   29.7   0.0    1.5  1  Hydrolase_4    Serine aminopeptidase, S33
    1.6e-05   24.6   0.1    8.8e-05   22.3   0.1    2.0  1  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
       0.19   12.0   0.0       0.39   10.9   0.0    1.5  1  CRISPR_Cas2    CRISPR associated protein Cas2


Domain annotation for each model (and alignments):
>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.6   0.0   6.2e-83   2.2e-79       4     299 .]       5     291 ..       1     291 [. 0.91

  Alignments for each domain:
  == domain 1  score: 266.6 bits;  conditional E-value: 6.2e-83
     DUF1749   4 kkapgllheyaerl...vafeyetsgelkskallFigGLgdGlltvpyvkelanald....eagwsvvelqlsssyggwGtgsLkrDaeeieklveYlk 95 
                 +  p+++h y++ +    a+e+ ++ +  ++a++FigGLgdG+++v+y++ +a  l+    e ++sv+e++l ss++g+Gt+sL  D+e+i++lv+Yl+
  CCE27004.1   5 NPFPVTVHPYKSPTrgaCAYELGSDVT-SKNAIIFIGGLGDGPHSVAYIRTVARHLEtagkELQYSVFEIRLRSSFIGFGTTSLTDDVEDIAALVKYLR 102
                 456799****97655558899888876.99***********************99972222578*********************************** PP

     DUF1749  96 ktksGeekkekvvlmGHstGsqdvlyYltssnerdrekvdgailqapvsDReailkvleerkklkelvalakklvdkgkaeeilprelaekvgletpvs 194
                        +kek+vl+GHstGsqd++ Y+   ++ +++ vdg+i+q+pvsDRe +  ++     +++++ala++ + +g+a+++lp++++++   + p++
  CCE27004.1 103 GL-----GKEKIVLFGHSTGSQDCMEYADYVKH-SNPPVDGFIMQGPVSDRESMDVIFPS---YQDSLALANEWIAQGRAHDCLPNDKVPQDL-SAPIT 191
                 99.....59******************998866.7889*****************99998...***************************998.9**** PP

     DUF1749 195 arRflsLasvdgdDDfFssDlsdeklektfGkvkepllillsekDefvpesvdkedllerwkeavkkkewseesGiipgAsHnveeesaeeaqkelver 293
                 a+Rf sL++ +gdDD+FssDl de ++k + + ++p+l+l s+++e++pe+vd+++  +r+++a     +s  sG+ipgA H+v ee    a+++l +r
  CCE27004.1 192 AYRFNSLVAKGGDDDYFSSDLDDETVRKFWSRFNKPVLVLHSGNEEILPEFVDQAKENQRYQKAN--PLVSPLSGLIPGAGHQVLEEI---AREWLAQR 285
                 **************************************************************984..346889***********9655...556***** PP

     DUF1749 294 vlsflk 299
                 vl +l+
  CCE27004.1 286 VLEYLR 291
                 ***996 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   1.1e-12     4e-09      26     212 ..      66     276 ..      36     285 .. 0.59

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1.1e-12
                    T.CEEEEE--T....TSTS-GGCS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.......EE.EEES-..----TTT...... CS
  Abhydrolase_6  26 g.vhvlapDlp....GhGrsdpppldledladlaalldelaagggpvvlvGHSlGGalalaaapla.....lvvg.vlldppptalpagl...... 104
                      + v+ + l+    G+G +++  +d+ed+a+l+ +l++l  g  ++vl+GHS G    +++a++      +v g ++  p  ++++ ++      
     CCE27004.1  66 LqYSVFEIRLRssfiGFG-TTSLTDDVEDIAALVKYLRGL--GKEKIVLFGHSTGSQDCMEYADYVkhsnpPVDGfIMQGP--VSDRESMdvifps 156
                    254446666665555899.988888888877778888888..59999**************66666999998899888888..3333333322222 PP

                    ....S----TTHHHHHHTT-CCCCHCCH.........S-HSCCCCHHHCCCCHCHCCCGHH......HHCCHHC..HTTCCHHTT-TTGCEEE.CT CS
  Abhydrolase_6 105 ....laaalelllallallrllawlsre.........plprlfladedadaawrarlarla......allaglg..llpaaawadlpvpllvl.gg 178
                        la a              +w + +          +p+++ a     ++ ++r+  l       ++++++   +  +  w +   p+lvl  g
     CCE27004.1 157 yqdsLALAN-------------EWIAQGrahdclpndKVPQDLSA-----PITAYRFNSLVakggddDYFSSDLddETVRKFWSRFNKPVLVLhSG 234
                    223333333.............45532222333322223345555.....6666666666633323322222222233477999999999999559 PP

                    T-CHHHHCHHCCCH.STTEEET.......CE...SSS-HHHH CS
  Abhydrolase_6 179 eDplvprllerlla.qagarlp.......vvlpgaGHlphle 212
                    +++++p++++++   q+  +          ++pgaGH +++e
     CCE27004.1 235 NEEILPEFVDQAKEnQRYQKANplvsplsGLIPGAGHQVLEE 276
                    999*******999874444442366679999******77775 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   9.8e-11   3.5e-07      54     237 ..      86     276 ..      81     278 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 9.8e-11
  Hydrolase_4  54 sfddyvdDlaafvekvkeehpelplfllGhSmGGliallyl...lrypdkvaglilsaPalkikaklk.appllklllkllgkllpklqvsnnlkads 147
                  s++d v+D+aa+v+ ++   ++++++l+GhS+G+   ++y+   ++  + v+g+i+ +P+ + + +++ + p ++  l l+++ + + + ++ l +d+
   CCE27004.1  86 SLTDDVEDIAALVKYLR-GLGKEKIVLFGHSTGSQDCMEYAdyvKHSNPPVDGFIMQGPVSDRE-SMDvIFPSYQDSLALANEWIAQGRAHDCLPNDK 181
                  66777999999999999.555667****************9996444447**********8755.666666666666777777777777766676666 PP

  Hydrolase_4 148 lsrd.pevvaayeadplvhgkitvrlllelldamkrleeraakitlPllllhGeaDkv....vdpeasrelyerlgsk.dktlklypglyHellnE 237
                  + +d  + + ay+ ++lv ++   + + + ld  +++++  ++++ P+l+lh++++++    vd+++  + y++++        l+pg+ H++l E
   CCE27004.1 182 VPQDlSAPITAYRFNSLVAKGGDDDYFSSDLDD-ETVRKFWSRFNKPVLVLHSGNEEIlpefVDQAKENQRYQKANPLvSPLSGLIPGAGHQVLEE 276
                  6655257799********999999999999985.78888999999***********985555778888999999998745555699*****99988 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   2.4e-08   8.8e-05      55     142 ..      83     183 ..      34     276 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.4e-08
                    SHHHHHHHHHHH......HHHCTTSSEEEEEETHHHHHHHHHHHHH...GGGEEEEEEESE....CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHH CS
  Abhydrolase_1  55 gtasvaddldri......ldalgddkltlvGhSmGGmialayaaey...perVkalvllga....idpaaslieaqrqqaksfpdffdgyaadcar 137
                    gt s+ dd++ i      l  lg +k++l GhS G++ +++ya      + +V+++++ g+     +    + + q+  a    + ++g a dc +
     CCE27004.1  83 GTTSLTDDVEDIaalvkyLRGLGKEKIVLFGHSTGSQDCMEYADYVkhsNPPVDGFIMQGPvsdrESMDVIFPSYQDSLALANEWIAQGRAHDCLP 178
                    33334444442222247799***********************988999999*********77664444445555666666667777777777777 PP

                    HHHHH CS
  Abhydrolase_1 138 npagp 142
                    n   p
     CCE27004.1 179 NDKVP 183
                    76654 PP

>> CRISPR_Cas2  CRISPR associated protein Cas2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011      0.39      17      41 ..      53      76 ..      48      96 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                 HHHHHHHHHTTEEEEETTEEEEEES CS
  CRISPR_Cas2 17 rkvakilkkyGfqrvQySVFegels 41
                 r va++l+   ++ +QySVFe +l 
   CCE27004.1 53 RTVARHLETA-GKELQYSVFEIRLR 76
                 7899******.**********8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2174.96
//
Query:       CCE27005.1  [L=1103]
Description: uncharacterized protein CPUR_00477 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00065   20.0   5.6       0.13   12.7   0.0    4.9  5  HEAT_2    HEAT repeats
  ------ inclusion threshold ------
      0.055   13.8   2.3        3.2    8.2   0.1    4.7  5  HEAT      HEAT repeat
      0.074   13.2   0.0       0.42   10.8   0.0    2.3  1  RTP1_C1   Required for nuclear transport of RNA pol II C-term


Domain annotation for each model (and alignments):
>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.36   2.1e+03       8      31 ..     197     224 ..     190     251 .. 0.61
   2 ?   -2.5   0.1       1.2     7e+03      17      39 ..     314     336 ..     299     339 .. 0.55
   3 !    5.5   0.1    0.0039        23      12      79 ..     600     677 ..     588     683 .. 0.70
   4 !   12.7   0.0   2.1e-05      0.13       4      80 ..     855     943 ..     852     947 .. 0.79
   5 ?   -1.2   0.0      0.46   2.7e+03      61      82 ..    1049    1068 ..    1020    1073 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.36
      HEAT_2   8 lendpdpevrraairaLg....rignpe 31 
                 +++ p+p+++ aa+++L     + +++ 
  CCE27005.1 197 ASTGPSPQIQTAALDVLEilyaSVRDQA 224
                 4555666666666666655443333333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
      HEAT_2  17 rraairaLgrignpealpaLvel 39 
                 +    + L + +++ +++aL +l
  CCE27005.1 314 ALSSMMKLRTHDSQNVRDALERL 336
                 34444555555666666666555 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0039
      HEAT_2  12 pdpevrraairaLg.....rignp.....ealpaLvell...ededpavRraaaeaLgaigdpealpaLkellddddddvv 79 
                 +d+++ + a+++ +     r          +++ L++++    +++   +++a+ +L  i+++  +++  +l  d  d+ v
  CCE27005.1 600 ADWQLEALALEVVAysaisR---GkafrqHLIDVLFPVVtflGSDNQLLQQHAIASLNSIALSCEYASVSDLIIDNVDYMV 677
                 67778888888888553320...122333335555555533389****************998888888888887777766 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 2.1e-05
      HEAT_2   4 LlqalendpdpevrraairaLg.....rignp........ealpaLvellededpavRraaaeaLgaigdpealpaLkellddddddvvR 80 
                 L q   ++p p++rr  ++ L+       g++         + p ++e l+d++p +  +a++aL+ + +  a ++L  +++++  d  R
  CCE27005.1 855 LTQHYLTSPTPQLRRSLLELLAtaapvLAGDEdrflpaihAIWPVVIERLRDSEPFISIEACHALSSLCEA-AGDFLSSRFRTEWPDWLR 943
                 5665559***************76666444447777778789************************99885.888888888777655555 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.46
      HEAT_2   61 pealpaLkellddddddvvRea 82  
                  ++ +++L++ l   +d++vR a
  CCE27005.1 1049 DDMVELLEDVLE--QDEEVRGA 1068
                  566777777773..55666764 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.21   1.2e+03      15      30 ..      96     111 ..      94     112 .. 0.85
   2 ?   -4.1   0.0         3   1.8e+04      12      24 ..     201     213 ..     198     216 .. 0.84
   3 ?   -2.6   0.0       1.7     1e+04       5      19 ..     318     332 ..     315     333 .. 0.78
   4 ?    0.1   0.0      0.22   1.3e+03       6      30 ..     857     881 ..     852     882 .. 0.81
   5 ?    8.2   0.1   0.00054       3.2       2      29 ..     897     924 ..     896     926 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHC CS
        HEAT  15 eVReaAakaLgalaev 30 
                  V e+++k+L  l+++
  CCE27005.1  96 LVAENCIKCLRVLIQH 111
                 6889*******99986 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3
                 SSHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaL 24 
                 psp++  aA+  L
  CCE27005.1 201 PSPQIQTAALDVL 213
                 7899999999876 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.7
                 HHHHHT-SSHHHHHH CS
        HEAT   5 llkllsDpspeVRea 19 
                 ++kl +++s +VR+a
  CCE27005.1 318 MMKLRTHDSQNVRDA 332
                 567668999****98 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.22
                 HHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   6 lkllsDpspeVReaAakaLgalaev 30 
                 ++ l++p p+ R++ ++ L++ a+v
  CCE27005.1 857 QHYLTSPTPQLRRSLLELLATAAPV 881
                 45599***********999987765 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.00054
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                  P++++ l+D++p++   A+ aL  l+e
  CCE27005.1 897 WPVVIERLRDSEPFISIEACHALSSLCE 924
                 599************************8 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.1e-05      0.42       8      74 ..     860     929 ..     856     958 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.1e-05
     RTP1_C1   8 lqdpllpvrahglvlLrkliekkske...avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpee 74 
                 l++p + +r   l lL++ +     +    +  i++i  +++e L+d+++++ ++a ++L++L+++  + 
  CCE27005.1 860 LTSPTPQLRRSLLELLATAAPVLAGDedrFLPAIHAIWPVVIERLRDSEPFISIEACHALSSLCEAAGDF 929
                 56666666666666665543322222223667789999**************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.43
# Mc/sec: 7736.90
//
Query:       CCE27006.1  [L=439]
Description: related to NPY1-NADH pyrophosphatase I of the Nudix family of hydrolases, has a peroxisomal targetin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-18   66.0   0.6    7.2e-18   64.9   0.6    1.5  1  NUDIX          NUDIX domain
    2.9e-09   37.5   0.1    6.3e-09   36.4   0.1    1.6  1  NUDIX-like     NADH pyrophosphatase-like rudimentary NUDIX do
    3.8e-09   36.1   0.6    6.9e-09   35.2   0.6    1.4  1  zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.6   1.2e-21   7.2e-18       8     117 ..     281     385 ..     275     396 .. 0.75

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 1.2e-21
                 EEEEETTSEEEEEEESSSSTTTEE.SSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE...EEECSGCSSTSTT CS
       NUDIX   8 vvllnekgevLlvrrskkpfpgWe.lPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl...eevegelepnden 102
                 +v+  + +++Ll r++ + +p+W+   +G++epgE++eeA+rRE++EE+G+++  +++++        ++p++ + ++++  +    + ege  + +++
  CCE27006.1 281 AVVSSDGKRMLLGRQA-RWPPHWHsNLAGFLEPGESVEEAVRREVWEEAGVRVGRVQVHS--------TQPWPYPSSLMIGAVaeaLPGEGEAITLNDK 370
                 444444556*******.88888966**************************999999999........55666655555444443555555555559** PP

                 TEEEEEEEEHHHHHH CS
       NUDIX 103 evsevrwvpleellk 117
                 e++++ w+p+ee+++
  CCE27006.1 371 ELESAAWFPVEEVAA 385
                 *************22 PP

>> NUDIX-like  NADH pyrophosphatase-like rudimentary NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   1.1e-12   6.3e-09       2     102 .]      60     214 ..      59     214 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.1e-12
  NUDIX-like   2 arfllfrrgrllves.....................eeseeelllpadssaalvgkdseelvfLGldeg............................ga 51 
                 ar++++ ++++lv                       + ++ +  ++a++s+     ++ +++fLG+  +                            g 
  CCE27006.1  60 ARYIALDNLSPLVVNkkklallsyqeiksvlgphpaFLQSDADRIKAFDSSK--VASEMQVLFLGTTTTkngvgvesevnadenevvwetsehgdvrGR 156
                 6888888999998885555555566665555555555555555566666654..59999999***5555567999999********************* PP

  NUDIX-like  52 pvfAvdvsareee........ikeaeeeggafvelRavmlalsaedaalaaqAralldW 102
                 p+fAvdvs  +++        +k++ee+g+ +v   ++ l+l+ e a+++aqAr+++dW
  CCE27006.1 157 PYFAVDVSTTRGDrreekkawLKSQEEKGF-WVASDTRSLTLHSEAASMFAQARSIMDW 214
                 ************99***9998777777776.6666666678****************** PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.6   1.2e-12   6.9e-09       2      28 ..     217     243 ..     216     245 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.2e-12
  zf-NADH-PPase   2 thrFCgrCGaptepaeggwarvCpaCg 28 
                    +hrFC+ CG+++   e+g++rvCp ++
     CCE27006.1 217 RHRFCAGCGHANLSIEAGYKRVCPPTD 243
                    7***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3202.00
//
Query:       CCE27007.1  [L=164]
Description: uncharacterized protein CPUR_00479 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1221.06
//
Query:       CCE27008.1  [L=369]
Description: uncharacterized protein CPUR_00480 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-36  122.0  11.8    3.6e-19   68.3   1.0    2.7  2  PQ-loop   PQ loop repeat


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   4.0   3.7e-20   6.6e-16       2      59 ..      16      73 ..      15      75 .. 0.95
   2 !   68.3   1.0     2e-23   3.6e-19       2      54 ..     211     263 ..     210     266 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 3.7e-20
     PQ-loop  2 seilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngfpp 59
                s i+g+is+++w++++ PQ+i N+   S+e lSi f++ wl+Gd++++++ +l+g +p
  CCE27008.1 16 SGICGSISIACWVLVFTPQLIANWTCGSAEALSIQFIIVWLIGDVFNIAGAVLQGVLP 73
                789**************************************************99776 PP

  == domain 2  score: 68.3 bits;  conditional E-value: 2e-23
     PQ-loop   2 seilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylil 54 
                 ++++gy+++v++++s++PQ+i+Ny+rk teGlS+lf+++++lG+++++l++++
  CCE27008.1 211 GQVFGYLCAVFYIASRVPQLILNYRRKTTEGLSMLFFIFACLGNVTYVLSIVA 263
                 79************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2914.09
//
Query:       CCE27009.1  [L=561]
Description: uncharacterized protein CPUR_00481 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 4359.23
//
Query:       CCE27010.1  [L=553]
Description: probable AOS1-forms together with Uba2p a heterodimeric activating enzyme for Smt3p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-26   93.0   0.0    2.5e-26   92.6   0.0    1.1  1  ThiF      ThiF family


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   1.4e-30   2.5e-26       1     219 [.     107     430 ..     107     447 .. 0.88

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 1.4e-30
                 THHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-...GGGTTSBHHHHHHHHHHHT-TTSEEEEEES- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   1 ysrqlallgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfr...eediGkpKaevaaealqeinpdveveavter 96 
                 y+rq++l+g + q+k+++s++ll+ + gl +e++knL+l+Gvg++tl D   +   +l  qf  +   e+ iG+++ae+a  al+++np v+v    e 
  CCE27010.1 107 YDRQIRLWGMAAQQKIQSSHILLITMRGLAHEIAKNLVLAGVGSITLLDGAAVTEADLGCQFFLSeggESVIGQNRAEAASHALRRLNPRVQVHVDSEG 205
                 89************************************************************9962226889*************************** PP

                 CCGCCS-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH............... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF
        ThiF  97 itdetvleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct............... 180
                 i ++    + +  +D+V+ +    +a  ++n a + +g  +  agt g++g+++  + ++t ++e +  +s+  +t+k+++                  
  CCE27010.1 206 IATKG--PSYFAAYDVVIATDLDPDAYNIINTATRINGRAFYAAGTHGMYGFIFNDLIEHTYVIERE--ASNVATTPKQESRTRaildvrtkfqgpkti 300
                 *9964..599********99888************99999999********9999953555555555..456666666655555778888888888888 PP

                 .............................................................................................HHHCTE CS
                 .............................................................................................xxxxxx RF
        ThiF 181 .............................................................................................siagni 186
                                                                                                              +  g  
  CCE27010.1 301 esvtkrelystwylasdvavlpaeyssskrrlksvtpalsclralwefkqlqggrlpsnrddlklftqlatqkhkalslpsdtltpqflrsflQNLG-- 397
                 8888**********************************************************************************99996554444.. PP

                 -B-HHHHHHHHHHHHHHHHHHHTTBCGGGCCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 187 paiatttavvaglaalellkllsgkeklensll 219
                   ia++ta+++g++a++++ +l ++++  ++++
  CCE27010.1 398 SEIAPVTAILGGQLAQDVINVLGATQQPIQNTV 430
                 89********************77777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 4080.82
//
Query:       CCE27011.1  [L=1210]
Description: uncharacterized protein CPUR_00483 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0068   16.4   1.8      0.019   15.0   1.8    1.7  1  Sds3      Sds3-like
  ------ inclusion threshold ------
      0.038   12.8   7.3       0.37    9.6   0.2    2.1  2  ALMT      Aluminium activated malate transporter
       0.19   11.0   2.7       0.33   10.2   1.8    1.7  2  DHHW      DHHW protein


Domain annotation for each model (and alignments):
>> Sds3  Sds3-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.8   3.2e-06     0.019      41     101 ..     117     177 ..      72     184 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.2e-06
        Sds3  41 ellrklrdleeerDaeLkrlrlreeyqlkriekefkadiekakqeheklvkllkeklyeel 101
                 e ++ +++l+++ D + ++  +r ey+l+  +++f+a+   ++q +e++v+++ e  ye  
  CCE27011.1 117 EHVAVVNQLQDNLDHKVHLCDQRLEYELEAAKHSFQAEQYLVQQAFENAVEDMFETFYEGQ 177
                 667889***********************************************99999865 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   6.2e-05      0.37     280     372 ..      64     157 ..      59     184 .. 0.70
   2 ?    5.9   2.1   0.00082       4.9     326     455 ..     568     707 ..     535     716 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 6.2e-05
        ALMT 280 cilseiqapeelrkkfkeelqrvslesakvlrelaesvkkmkklsk.veellkevkvaaeeLqskldskskLlvnsekweaakkkekaeeveek 372
                 + +s +qa+ e ++ +k++ q v+l+   +l+elae++ +   + + + +l  e    +++Lq +ld+k +L  +  + e +  k++ ++++  
  CCE27011.1  64 FSDSRVQAAYERQRDLKANYQAVALALKPALQELAERTVDDMLQRPdSYKLAGEHVAVVNQLQDNLDHKVHLCDQRLEYELEAAKHSFQAEQYL 157
                 558899*****************************9876555555514455555555579*********9876544444444444433333333 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.00082
        ALMT 326 veellkevkvaaeeLqskldskskLlvnsekweaakkkekaeeveekkeeekeseskkeea.eaveeaeseseksllkeskrslklskkesapaeesle 423
                  e ++k++ +a  eL+++    s++l+++ek+++  +  ++ ++  ++   +++ s++e + ++++e+e+e e+ + +++ ++++ ++ke  ++ ++++
  CCE27011.1 568 EELISKSLGTAERELKARPPRASEILLEAEKDKKVAEDDETRRKGVETVIGTQTGSRNEDErQQESETEKEGETLAAETEAEEKEEEEKEDGEHVVEEL 666
                 3677888999999999999999********988877766665554444433333333222212222222222222111111111111111111111111 PP

        ALMT 424 e.........kqlskeeelkelelaealslatfaslLielv 455
                           +++++    ++  +++a+s+ t as  ++  
  CCE27011.1 667 GaqdkgkevvSVTKALGDDQSSPVLSAMSVLTYASAFVAAQ 707
                 11122221213333444556666778888888888877665 PP

>> DHHW  DHHW protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.29   1.8e+03     143     166 ..     111     134 ..     109     138 .. 0.87
   2 ?   10.2   1.8   5.5e-05      0.33      65     162 ..     599     698 ..     571     716 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.29
        DHHW 143 slevadeyaaivnnikqkLkekaa 166
                 s+++a e++a+vn+++++L+ k+ 
  CCE27011.1 111 SYKLAGEHVAVVNQLQDNLDHKVH 134
                 789999*************98876 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 5.5e-05
        DHHW  65 vekddadeekeeldvienisseasteasdaa.kessaesdsse.aaskeavekeddskkdgeilnavlvlgdsaieyysfslevadeyaaivnnikqkL 161
                 ++k  +d e+  + v   i +++++  +d   +es+ e +  + aa +ea eke++ k+dge + + l ++d++ e  s + +++d+  + v +  ++L
  CCE27011.1 599 DKKVAEDDETRRKGVETVIGTQTGSRNEDERqQESETEKEGETlAAETEAEEKEEEEKEDGEHVVEELGAQDKGKEVVSVTKALGDDQSSPVLSAMSVL 697
                 3455666777778888889999999887765145566666666688888999**********************************9999998877777 PP

        DHHW 162 k 162
                  
  CCE27011.1 698 T 698
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1243  (0.069329); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.49
# Mc/sec: 7484.13
//
Query:       CCE27012.1  [L=368]
Description: uncharacterized protein CPUR_00484 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-59  198.9   0.1    9.4e-58  195.2   0.1    2.0  1  DUF2431         Domain of unknown function (DUF2431)
    0.00013   20.5   2.6    0.00013   20.5   2.6    2.0  3  CDC45           CDC45-like protein
  ------ inclusion threshold ------
       0.21   10.5   5.7       0.34    9.8   5.7    1.3  1  Paramyxo_ncap   Paramyxovirus nucleocapsid protein
       0.66    8.0   7.4          1    7.4   7.4    1.3  1  Sporozoite_P67  Sporozoite P67 surface antigen
       0.79    9.4   5.3        1.8    8.2   5.3    1.6  1  DUF4636         Domain of unknown function (DUF4636)
        1.6    7.4  10.4        2.2    7.0  10.4    1.2  1  SAPS            SIT4 phosphatase-associated protein
        2.9    7.1  20.8       0.59    9.4  16.3    1.9  2  NOA36           NOA36 protein
        3.5    7.6   4.3        1.1    9.2   0.7    1.8  2  DUF2561         Protein of unknown function (DUF2561)


Domain annotation for each model (and alignments):
>> DUF2431  Domain of unknown function (DUF2431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.2   0.1   4.2e-61   9.4e-58       1     168 []      67     303 ..      67     303 .. 0.98

  Alignments for each domain:
  == domain 1  score: 195.2 bits;  conditional E-value: 4.2e-61
     DUF2431   1 LlvGegdfSFarslveqhkcenlvaTsyd.seeellekypqaeenieeLeee............................................... 51 
                 Ll+Ge+d+SFa+s++++h+c+n++aT+++ ++ el +kyp aeeni+ ++                                                 
  CCE27012.1  67 LLIGEADLSFAASIIKHHGCTNVTATVLEkNHGELVAKYPAAEENIAIVQGTesnaaevqttrskkarddhndaqnnddnandddtddddddddddeks 165
                 8****************************9*******************999999******************************************** PP

     DUF2431  52 ...........................gvkvlfgVDatkleksklqeklkkekfdriifnFPhvggkstdvnrqvranqeLlvsffksakellsekpge 123
                                            + ++l+++Datkl+      +l++   ++i+fnFPhvggkstdvnrqvr+nqeLlvsff+sa + l+++ g+
  CCE27012.1 166 sneyesprhdstpsekqkpkppsqrkhNNRLLYNIDATKLP-----ISLSRPPHHHILFNFPHVGGKSTDVNRQVRYNQELLVSFFNSALRALAPG-GS 258
                 *****************************************.....34556669******************************************.** PP

     DUF2431 124 ilvtlfegepytlwnikdlareaglkvvrsfkFdaeaypgYkhar 168
                 i+vtlfegepytlwni+dlar+agl+v+rsf+F+a+aypgYkhar
  CCE27012.1 259 IIVTLFEGEPYTLWNIRDLARHAGLQVERSFRFQAAAYPGYKHAR 303
                 *******************************************97 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.8   4.7       5.2   1.2e+04     190     208 ..      25      47 ..       2      65 .. 0.34
   2 !   20.5   2.6   5.6e-08   0.00013     124     195 ..     124     194 ..      85     262 .. 0.59
   3 ?   -4.6   1.2       2.2   4.9e+03     132     147 ..     340     354 ..     322     363 .. 0.41

  Alignments for each domain:
  == domain 1  score: -5.8 bits;  conditional E-value: 5.2
       CDC45 190 krrrse....psakklrrqlkke 208
                 +r+ ++    ++ak+ + + kk+
  CCE27012.1  25 SRSIRDedgvRKAKTPQASAKKR 47 
                 11111122221111111111111 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 5.6e-08
       CDC45 124 ealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrse 195
                 e  +  +++ ++d +++ +++dd+++++++++d++d+++de++s++ ++ ++d++ +++++ +++++r++++
  CCE27012.1 124 EVQTTRSKKARDD-HNDAQNNDDNANDDDTDDDDDDDDDDEKSSNEYESPRHDSTPSEKQKPKPPSQRKHNN 194
                 2222222222222.2222222333333333333333333333333334444444444556666777777666 PP

  == domain 3  score: -4.6 bits;  conditional E-value: 2.2
       CDC45 132 sdeedeeeeeedddde 147
                 ++++++++ +++d+ +
  CCE27012.1 340 VKRKKRRRVDDEDE-D 354
                 33222111111111.1 PP

>> Paramyxo_ncap  Paramyxovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.7   0.00015      0.34     409     521 ..      83     195 ..      68     198 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00015
  Paramyxo_ncap 409 avgpkqaqvsflrsdrseeeqkraskkeekrekqsrkearesskedkkkeatdeeaaslsketlldvdttsesdedpleskksaeallklralaki 504
                      g  +   + l+++++e   k ++ +e+    q  +++ ++++++++k+a+d+++  + ++ + + d t ++d+d  +++ks +   + r+ ++ 
     CCE27012.1  83 HHGCTNVTATVLEKNHGELVAKYPAAEENIAIVQGTESNAAEVQTTRSKKARDDHNDAQNNDDNANDDDTDDDDDDDDDDEKSSNEYESPRHDSTP 178
                    567777778899999999999999999*************************99998888888888888888888889999999888888888888 PP

  Paramyxo_ncap 505 ledseaeedsskvyndk 521
                    +e+++ +  s++ +n++
     CCE27012.1 179 SEKQKPKPPSQRKHNNR 195
                    88888777777777766 PP

>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.4   0.00045         1      89     139 ..     125     171 ..      79     197 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00045
  Sporozoite_P67  89 fqepvsqeselqsdteineddkGskedseedddeeeeednkstsskdgkgs 139
                     +q+  s++++ +++  +n+dd+ +++d ++ddd  +++d++ +s   + +s
      CCE27012.1 125 VQTTRSKKARDDHNDAQNNDDNANDDDTDDDDD--DDDDDEKSSN--EYES 171
                     222233333333334444444444444433333..3333333333..2222 PP

>> DUF4636  Domain of unknown function (DUF4636)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.3   0.00082       1.8     110     186 ..     115     192 ..     103     204 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00082
     DUF4636 110 tpvtdsevalvnayleqrrarrhsqlnqvnqiqkdsdtteldseesnsgasswkesese.hhpspasikrrki.aqrqr 186
                    t+s+ a v++   ++    h + ++ +++ +d dt + d ++ + + ss  e es  h+ +p++ ++ k   qr++
  CCE27012.1 115 VQGTESNAAEVQTTRSKKARDDHNDAQNNDDNANDDDTDDDDDDDDDDEKSSN-EYESPrHDSTPSEKQKPKPpSQRKH 192
                 45589999999998777777778888888888889999888888888888775.5666505555655555553245544 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  10.4   0.00098       2.2     245     336 ..      26     172 ..      17     207 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00098
        SAPS 245 eivkerDevrerlleeltseeealedvs..................................................................deask 277
                 + ++ +D+vr+  + + ++++ + ++++                                                                  +    
  CCE27012.1  26 RSIRDEDGVRKAKTPQASAKKRQQSHQNeqpiipfdsqdrilligeadlsfaasiikhhgctnvtatvleknhgelvakypaaeeniaivqgteS---- 120
                 55677777777777666333222222223455666666666666666666666666666677777777777777777776555555454444331.... PP

        SAPS 278 eesaesedltdkdedvsleesksakd....enkesdesesdtaeesseededdasseesalae 336
                            + ++v++  sk+a+d     ++++d++++d++++++++d+dd++s++++++ 
  CCE27012.1 121 -----------NAAEVQTTRSKKARDdhndAQNNDDNANDDDTDDDDDDDDDDEKSSNEYESP 172
                 ...........2222222222222221111111112222222222222222222222222111 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  16.3   0.00026      0.59     253     300 ..     122     168 ..      89     176 .. 0.52
   2 ?   -0.8   0.1      0.34   7.6e+02     273     286 ..     346     359 ..     305     365 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00026
       NOA36 253 dsdydaylkalasgddeddegdedddddddeedddeeeddedeeeeee 300
                 +++ ++ +++ a  dd++d +++dd+ +dd+ ddd+++dd+de++ +e
  CCE27012.1 122 AAEVQTTRSKKAR-DDHNDAQNNDDNANDDDTDDDDDDDDDDEKSSNE 168
                 2333333333222.3444444444444444443333333333333333 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.34
       NOA36 273 gdedddddddeedd 286
                    dd+d+d ++++
  CCE27012.1 346 RRVDDEDEDGDSSE 359
                 23333333333332 PP

>> DUF2561  Protein of unknown function (DUF2561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.7   0.00049       1.1      88     159 ..       4      77 ..       1      93 [. 0.81
   2 ?   -1.1   0.2      0.73   1.6e+03     107     146 ..     118     153 ..     100     154 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00049
     DUF2561  88 rrvaeaePaarargaperaaaapargadapaeraeaeeasaekaealreaaews..saavdrvwLrgtvvlasa 159
                 rr  + +Pa++++ +p++ ++++ +  +   ++a++ +asa+k++  +++ +++   +  dr++L g + l+ a
  CCE27012.1   4 RRKLQRQPARPQSQKPRANPRSRSIRDEDGVRKAKTPQASAKKRQQSHQNEQPIipFDSQDRILLIGEADLSFA 77 
                 7788889*************9999999999999999999888877777777765224788*****998887655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.73
     DUF2561 107 aaapargadapaeraeaeeasaekaealreaaewssaavd 146
                 +++   +a+  ++r  +++a+ ++++a +++ + +++ +d
  CCE27012.1 118 TES--NAAEVQTTR--SKKARDDHNDAQNNDDNANDDDTD 153
                 222..222333333..556677788887777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1277  (0.0712254); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        48  (0.00267723); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.79u 0.35s 00:00:01.14 Elapsed: 00:00:00.50
# Mc/sec: 2221.15
//
Query:       CCE27013.1  [L=897]
Description: related to histone-lysine N-methyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-21   74.2   4.8    1.6e-20   73.1   4.8    1.6  1  SRI             SRI (Set2 Rpb1 interacting) domain
    5.5e-18   65.9   0.9    3.7e-17   63.2   0.1    2.8  2  SET             SET domain
    5.3e-10   39.2   7.5    5.3e-10   39.2   7.5    2.1  2  AWS             AWS domain
    6.8e-07   29.2   2.1      2e-06   27.7   0.5    2.4  2  Med26           TFIIS helical bundle-like domain
    7.3e-07   29.2   0.8    1.5e-06   28.1   0.8    1.6  1  WW              WW domain
  ------ inclusion threshold ------
       0.12   11.1   0.9        0.2   10.4   0.9    1.2  1  TGase_elicitor  Transglutaminase elicitor
       0.22   11.3   3.1        8.3    6.1   1.0    2.3  2  DUF445          Protein of unknown function (DUF445)


Domain annotation for each model (and alignments):
>> SRI  SRI (Set2 Rpb1 interacting) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   4.8   6.1e-24   1.6e-20       2      84 ..     643     725 ..     642     726 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 6.1e-24
         SRI   2 kkqekkfkkelakvVvnvlnkYrkklkkedfKklakeltkklvekElkkdksrdppkelseekkkkikefvkeYmekfgakyk 84 
                 +kq+k++++++++ V+ v++k+r+kl+k+++K+l ke++kklv++++k+++ +dp++ l e+++ kik++vk+++ ++++ky 
  CCE27013.1 643 DKQMKIYENTIFPPVKAVMDKFRHKLPKDELKRLGKEIAKKLVASDYKNRRVNDPTAPLPEKQTLKIKKYVKDFLTRAVEKYD 725
                 699**********************************************88669***************************97 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.1   1.5e-20   3.7e-17       1     169 []     173     279 ..     173     279 .. 0.90
   2 ?   -1.9   0.0       1.5   3.8e+03      24      84 ..     387     465 ..     358     531 .. 0.54

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 1.5e-20
                 SCEEEESSXBXTTXEEEEEE.ECCEECHHHHHHHHHH........HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHX CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeyp.eeiiltkdeadksele........aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskae 90 
                 G+G++A  d+++++fi ey  e  ++++ + ++++l+         y++sl+                                               
  CCE27013.1 173 GYGLRADSDLQPNDFIYEYIgE--VINEPTFRRRMLQydqegikhFYFMSLS----------------------------------------------- 222
                 9***************999977..99999999999999******99999999............................................... PP

                 TTTSXXXHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  91 sdlnaskpeagafsaiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                                  + ++d  a+ +gn      rf+NHsC+pNc++   +v +  r+++fA+r+I+ GeEl ++Y+
  CCE27013.1 223 ----------------KSEFVD--ATRKGNLG----RFCNHSCNPNCYVDKWVVGDKLRMGIFALRKIRVGEELVFNYN 279
                 ................333499..77999999....***********5555555************************7 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
                 EECHHHHHHHHHH.......................HTEEEEEXGGXXGGSX...HHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHH CS
                 xxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  24 iltkdeadksele.......................aylfslpeapknlaft...kelakasastllqklakdqkqaekedtdaalk 84 
                  l++d+ +++  +                       + l+ l+        +   + ++k ++s+  +++++    +++e   +  k
  CCE27013.1 387 QLSNDDRVLRSVMrmhayqilrttlntfieddnvvlQVLDILD--------KfprMTRNKIQDSKIETTIQGLTTSNHDEVASKSKK 465
                 4555555555555655554444444444444443332222222........122333333333333333333333333333332222 PP

>> AWS  AWS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   7.5   2.1e-13   5.3e-10       4      39 .]     122     159 ..     120     159 .. 0.90
   2 ?   -2.3   1.0       1.8   4.7e+03       2      12 ..     287     298 ..     286     298 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 2.1e-13
         AWS   4 psgcgs..dCiNRmlliECteetCpcGerCqNqrfqrk 39 
                 + +cg+  dCiNR++ +EC +    cG  CqNqrfqrk
  CCE27013.1 122 NQACGEdsDCINRATKMECAATSGNCGGGCQNQRFQRK 159
                 56676666*************999*************8 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
         AWS   2 depsgcgs.dCi 12 
                 ++p+ cg+ +C+
  CCE27013.1 287 PQPCYCGEaNCV 298
                 578889998996 PP

>> Med26  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.5   7.8e-10     2e-06       2      52 ..     424     473 ..     423     473 .. 0.86
   2 ?   -0.3   0.0      0.45   1.2e+03      23      46 ..     658     685 ..     640     687 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 7.8e-10
                 HHHHS---.....HHHHHHSHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHH CS
       Med26   2 iLaqLeklpi.ttetLkstgIGkvVnalrkhkhetaevktlAksLvekWkka 52 
                 +L+ L+k+p  t+++++ ++I  ++  l+  ++ ++ev+++ k+L+e+W+k+
  CCE27013.1 424 VLDILDKFPRmTRNKIQDSKIETTIQGLT--TSNHDEVASKSKKLLEEWSKL 473
                 56777777666999**************5..5559**************985 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.45
                 HHHHHHHH-TTS-HHHHHH....HHHHH CS
       Med26  23 kvVnalrkhkhetaevktl....AksLv 46 
                 k+V+   +hk + +e+k+l    Ak+Lv
  CCE27013.1 658 KAVMDKFRHKLPKDELKRLgkeiAKKLV 685
                 4444433688889999999777788887 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.8   5.9e-10   1.5e-06       1      31 []     550     578 ..     550     578 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 5.9e-10
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP+GW +++d++ G +YYyN++ g+t+W +P
  CCE27013.1 550 LPEGWFTAKDAR-GATYYYNKQ-GKTTWSRP 578
                 8***********.********9.*****999 PP

>> TGase_elicitor  Transglutaminase elicitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.9   7.7e-05       0.2      84     150 ..     121     186 ..     115     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.7e-05
  TGase_elicitor  84 srkkCssdadCeslkdgsvCakregessGyCiptWfgichawapaalleeePrCavekngvtfqpld 150
                     ++++C +d+dC ++  + +Ca  +g+  G C  + f   + wa  a++ +e +    + +  +qp d
      CCE27013.1 121 ENQACGEDSDCINRATKMECAATSGNCGGGCQNQRFQ-RKEWANVAVIKTEKKGYGLRADSDLQPND 186
                     5789*****************************9998.578*******9998876666666666655 PP

>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   1.0    0.0032       8.3     100     220 ..     358     481 ..     313     497 .. 0.53
   2 ?    4.9   0.0    0.0076        19     166     237 ..     660     730 ..     583     752 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0032
      DUF445 100 lddesikellkknlk.......................kkleevipepllgkllellleeerhkkllddlldriknllkdeevkekikelidelieees 175
                 ld+++ ++++ ++l+                       + ++++   ++l                     + +  +++d+ v  ++ +++d++ + + 
  CCE27013.1 358 LDEDDSRKVMAALLQckekwiavklleriqlsnddrvlRSVMRMHAYQILR--------------------TTLNTFIEDDNVVLQVLDILDKFPRMTR 436
                 333333333333333333444432222222222222223333333333333....................4555666666666666666666655555 PP

      DUF445 176 gklvlesivsmflreltsilekvksdpdhllreeedkkvreliad 220
                 +k+ + +i ++++  +ts  ++v s+ ++ll+e  + +++ +i++
  CCE27013.1 437 NKIQDSKIETTIQGLTTSNHDEVASKSKKLLEEWSKLEMAYRIRR 481
                 555566666666666666666666666666666666665555555 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0076
      DUF445 166 lidelieeesgklv....lesivsmflreltsilekvksdpdhllreeedkkvreliadllndpelaakveklkkk 237
                 ++d+++ +  +k       ++i+++++ + +   ++  +dp+ +l e+++ k++++++d+l+  ++ +k+++ +kk
  CCE27013.1 660 VMDKFRHKL-PKDElkrlGKEIAKKLVAS-D-YKNRRVNDPTAPLPEKQTLKIKKYVKDFLT--RAVEKYDEHQKK 730
                 444443333.4444344466677777766.4.455555599999999999999999999999..566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 6093.21
//
Query:       CCE27014.1  [L=184]
Description: uncharacterized protein CPUR_00486 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.081   12.8   0.1        3.8    7.4   0.0    2.6  2  YrhK      YrhK-like protein


Domain annotation for each model (and alignments):
>> YrhK  YrhK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00021       3.8      14      39 ..       7      33 ..       3      35 .. 0.89
   2 ?    2.4   0.0    0.0079   1.4e+02      16      26 ..      73      83 ..      70      93 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00021
        YrhK 14 gsllFlvGSilflpnse.fwkwqiagv 39
                 s++Fl GS  + p++  ++k+q++ v
  CCE27014.1  7 VSSIFLAGSAIAVPTTVqTDKPQTFDV 33
                689*************9999*999987 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.0079
        YrhK 16 llFlvGSilfl 26
                 +F+ GS lfl
  CCE27014.1 73 TFFIEGSKLFL 83
                67888999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1323.50
//
Query:       CCE27015.1  [L=242]
Description: uncharacterized protein CPUR_00487 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   11.7   0.1       0.26   11.3   0.1    1.1  1  FNIP_M    Folliculin-interacting protein middle domain


Domain annotation for each model (and alignments):
>> FNIP_M  Folliculin-interacting protein middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.5e-05      0.26      60     119 ..      10      68 ..       5      76 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.5e-05
      FNIP_M  60 kksfvqrivealeefretlldlytaprleepvwlnlvssesekrqlaerfleelssllee 119
                 k+  ++ ++++ + ++etl+++++a ++  pvw+++     +  + + + ++++++  ++
  CCE27015.1  10 KRFVLAEMLKSSNICVETLWQFVKANQI-IPVWIDMQVPLGRTLSQCIQVVQQMAEAPPR 68 
                 5566799********************9.8********9999999999999999886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1830.09
//
Query:       CCE27016.1  [L=499]
Description: probable 4-aminobutyrate transaminase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.6e-117  390.8   0.0   6.6e-117  390.6   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
     0.0059   15.8   0.0     0.0087   15.3   0.0    1.3  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  390.6   0.0  7.4e-121  6.6e-117       3     405 ..      68     495 ..      66     496 .. 0.97

  Alignments for each domain:
  == domain 1  score: 390.6 bits;  conditional E-value: 7.4e-121
                  -TTB--SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHH....HHHCT-..SEEEEESSH CS
  Aminotran_3   3 areednlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekl....lklapkgldkvflansG 96 
                  + ++ n+++++t++ G+yl+d dg+++lD++++ia++++G+++P++ ka++++++   +++++al+n p+  +a +l    lk+ap gl++v +a++G
   CCE27016.1  68 DTRSINMMADYTQSVGNYLADPDGNMLLDVYAQIASIPVGYNNPALRKAAQTPEMVDAIINRPALGNFPSHTWAGILesgvLKVAPRGLSNVYTAMAG 165
                  56777999****************************************************************************************** PP

                  HHHHHHHHHHHHHHHHHTSHCTT-......................EEEEETTT---SSHHHHHHSS--TTTTTTCTTB...-TSEEEE-TTBGGGTB CS
  Aminotran_3  97 seAvetAlKlarkyarekkatekt......................kiiafkgafHGrtlgalsvtgskkkyktlfgpf...lpevvrlkypdeevlk 169
                  s+A+e A+K+a++y+r++++                          +i++fk++fHGr++g+ls+t+sk+++k ++++f   ++ +++lkyp+  +  
   CCE27016.1 166 SDANELAYKAAFMYKRQQERGGPDveftthemesvmnnqspgsaqlSILSFKSSFHGRLFGCLSTTRSKAIHKLDIPAFdwpQATFPQLKYPLDQHEA 263
                  ****************998666667799999*************************************************999*************** PP

                  -HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGC..TS--SEEEE-.GGGG CS
  Aminotran_3 170 eneeeeaalleelealekkkkdevaAvivEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAleha..gvspDlmtla.Kalt 264
                  en+++e+  l e+e+l k+++   aAv+vEpiq+egG+++asp+f++klr+l++kh+vlli+DEvqtG+G+TGk++A+eh+  + +pD++t++ Ka++
   CCE27016.1 264 ENAQAEQDSLDEVEHLLKTWHLPPAAVVVEPIQSEGGDNHASPAFFQKLRALTRKHNVLLIADEVQTGVGATGKFWAHEHWnlEDPPDMVTFSkKAQA 361
                  *********************************************************************************9999********9**** PP

                  TT.SS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-.TTEEEEEEE..TTEEEEEEBCCCET CS
  Aminotran_3 265 gG.lplsavlataevmqalapgshgsTfgGnplacavalavleiieeekllenaqelgaalkegLeelqkky.evikevRgk..Glmiaielkeeaev 358
                  +G +  s  l+++++++++      +T++G+p+++++++a+++ i++ +l+++++++g++l+e+Le l+ ++ e+++++Rgk  G++ia++ ++++  
   CCE27016.1 362 AGyYYSSTDLRPNKPYRQF------NTWMGDPSKALLFRAIIDEIHRLDLVNHTARVGQYLYEQLEGLARAHpEHFQNLRGKgqGTFIAFDNPKRDA- 452
                  **8888999**********......********************************************9999********9778999998887777. PP

                  TCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHHHHHHHHHHHHH CS
  Aminotran_3 359 kekeilkkakekGvlilsaGdnvirllppliitdeeidelleilkka 405
                      +l+kak+ Gv+i+++G +++rl+p+l+++++++d l+ +l+k+
   CCE27016.1 453 ----FLAKAKQFGVNIGGSGAQAVRLRPMLTFQEHHVDILIGALEKV 495
                  ....*************************************999985 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.7e-07    0.0087     134     235 ..     275     367 ..     245     418 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.7e-07
                    HHHHHHTTHHCTTETEEEEEEESS-TTT--B.--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH.HGGSTTSTTEEEEEESSSTTSSGG CS
  Aminotran_1_2 134 aleealkeapegnkktkvilvesphNPtGtv.atleeleklldlakkynlllfvDeaYagfvfgsldavat.ranveeepnllivgslsKafGlaG 227
                    ++e +lk+ +    ++  ++ve +++  G+  a+++  +kl +l++k+n+ll+ De+   +v  + +++a  + n+e+ p+   + ++sK   +aG
     CCE27016.1 275 EVEHLLKTWH---LPPAAVVVEPIQSEGGDNhASPAFFQKLRALTRKHNVLLIADEVQT-GVGATGKFWAHeHWNLEDPPD---MVTFSKKAQAAG 363
                    3344444422...2677888888888888854899999*******************55.555446899999*********...99****999998 PP

                    G-EEEEEE CS
  Aminotran_1_2 228 eRvGyilg 235
                        y ++
     CCE27016.1 364 ----YYYS 367
                    ....6655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3691.82
//
Query:       CCE27017.1  [L=870]
Description: related to CLC chloride channel protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-91  307.6  26.1    6.3e-90  302.0  23.8    2.0  2  Voltage_CLC  Voltage gated chloride channel


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0   0.00038       6.8     190     275 ..     143     256 ..     135     258 .. 0.60
   2 !  302.0  23.8   3.5e-94   6.3e-90      16     353 ..     305     681 ..     300     682 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00038
                  HHHHCHH.CHHHH.HHHHHHHHHHHHHHHCCCS.......CC.CSSSSCCH.......................HHHHCTT-S-HHHHHH...HHHHH CS
  Voltage_CLC 190 rlfrkle.klkik.krlepalvgllvgllglll.......pasvlgggyel.......................iasllegstlllsllllllllllk 255
                   ++ +++ +l+ +  +++ al+g++v+l+++++              + +                         ++++++++    ++  l++++l 
   CCE27017.1 143 DFWGRVRvALDGSqGWILSALCGFVVALIAYVVdvaevmvF----DFKDGYcakawyknekkccphgscddwnsWSQAFSSNPMGELWTDFLIYWVLV 236
                  56666666666665788***************954443330....33333333444444444444444444444555665543333444456677777 PP

                  HHHHHHHHCTT-CSBSHHHH CS
  Voltage_CLC 256 llataltlgsgvpgGifaPs 275
                  + +++l++ +++++ +++Ps
   CCE27017.1 237 ISLACLSCLIALQTKTVVPS 256
                  88888888888888888887 PP

  == domain 2  score: 302.0 bits;  conditional E-value: 3.5e-94
                  GGSC-SHHHHHHHCTTSS--..-HHHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHH.TT.--SHHHHH.HHHHHHHHHHHHHHT-HHHH CS
  Voltage_CLC  16 eaagsGipevkaalngvkgp..lslrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrl.lklsrndrdrr.lvaaGaAAGiAAaFnaPlgG 109
                   aagsG+ ev+ +l+g+  +  l +++l++k++a+vl+vgsGlslG+eGp+v+i+++vg++ +rl  k+++nd++rr +++a+aAAG+A+aF+aPlgG
   CCE27017.1 305 SAAGSGVAEVRVILSGFVLHgfLGFKTLVIKTVALVLSVGSGLSLGKEGPYVHIATCVGNIACRLfSKYDQNDAKRReILSAAAAAGVAVAFGAPLGG 402
                  699***************999******************************************99455699**9************************ PP

                  HHHHCTTTSTSS--TTHHHHHHHHHHHHHHHHHHCTTS-S....-.T---...--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHHH CS
  Voltage_CLC 110 vlfalEevsrefslrallpvfvasvvaalvlrlllgeepa....fgeveslfalsllelilfvllGilgGllgalfvrlllkverlfrkleklkikkr 203
                  vlf+lEev+  f  ++l+++f+++++aal l++l+ + ++    f+ v  l +++++el+ fv++G++gG+lgalf++ + ++++ fr+++ +k +++
   CCE27017.1 403 VLFGLEEVAYFFPAKTLFRTFFCCIIAALSLKFLNPYGTHkivmFQ-VRYLVDWEYFELVSFVFVGVVGGALGALFIKASKFWAQSFRRIHSIKSHPM 499
                  **********************************988877777776.777779************************************988888899 PP

                  HHHHHHHHHHHHHCCCSCC.CSSSSC.CHHHHHC...TT-S-..................HHHHHH...HHHHHHHHHHHHHCTT-CSBSHHHHHHHH CS
  Voltage_CLC 204 lepalvgllvgllglllpasvlgggy.eliasll...egstl..................llsllllllllllkllataltlgsgvpgGifaPsLviG 279
                  le++lv+l++g+l+++ p  v + +  +l+ +l+   +                         ll+l++++l+k ++t++t+g++vp+Gi++Ps+v+G
   CCE27017.1 500 LEVFLVALVTGSLSFWNPL-V-KEPVaKLLLNLAspcD---GndentdelglcpgsvndiPSILLTLIVAFLIKGFLTVITFGIKVPAGIYIPSMVVG 592
                  9***************987.4.3333033333334552...134466899999999999878888999****************************** PP

                  HHHHHHHHHHHHHH-C..............TSSC....HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC--GCCHHHHHHHHHHHHHHHC CS
  Voltage_CLC 280 AalGrlvglvlalllp..............gaass.dpgafalvGmaaflagvtrapltaiviviEltgdlelllplmlavliAkavad 353
                  ++lGr++g+++++++                + s+ +pg++a ++++a+++gvtr+++t++vi++Eltg+l+++lp+ l++l+Ak++ad
   CCE27017.1 593 GLLGRIIGHLVQWFVLavpdwaifgncataADGSCiQPGVYAFIAAGATMCGVTRLSVTLAVILFELTGSLDYVLPFSLTILVAKWTAD 681
                  *************9778899999******9777888***************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.23s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 6351.70
//
Query:       CCE27018.1  [L=626]
Description: related to SAS10 protein, involved in silencing [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-29   99.9   5.9    8.1e-29   99.9   5.9    2.5  2  Sas10       Sas10 C-terminal domain
    7.7e-11   42.5   0.6    3.1e-10   40.5   0.0    2.4  2  Sas10_Utp3  Sas10/Utp3/C1D family


Domain annotation for each model (and alignments):
>> Sas10  Sas10 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   1.0         2   1.8e+04      21      24 ..     356     359 ..     346     378 .. 0.44
   2 !   99.9   5.9   9.1e-33   8.1e-29       2      74 .]     552     626 .]     551     626 .] 0.98

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 2
       Sas10  21 Rkke 24 
                 + k+
  CCE27018.1 356 KDKA 359
                 2222 PP

  == domain 2  score: 99.9 bits;  conditional E-value: 9.1e-33
       Sas10   2 dgkRkityqIekNkGLtpkRkkenrnpRvkkrkkYekakkklksqvaevk..keegkYsGektGIksnvvkSvkL 74 
                 dgkRkity+IekNkGL+pkR+k++rnpRvk rk+Ye+++kklks++++ +  +++g+Y Ge +GI+++v+kSvkL
  CCE27018.1 552 DGKRKITYAIEKNKGLAPKRSKDVRNPRVKRRKQYEAKQKKLKSMKPVWQggEPKGGYRGELSGINTGVIKSVKL 626
                 8*************************************************999999******************8 PP

>> Sas10_Utp3  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   3.5e-14   3.1e-10       2      87 .]     222     310 ..     221     310 .. 0.86
   2 ?   -2.4   0.2      0.84   7.6e+03      15      21 ..     341     347 ..     315     374 .. 0.52

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 3.5e-14
  Sas10_Utp3   2 eslsksldelqeslepllskakaeekkslsdeklsegisllslKnelllaYllnlllylllk.lsg..............velkdhpvvkeLvrlRvyl 85 
                  +l+++l+elq+ l++l+++a  +++           +s+  +K+++l +Y+++l+ y  ++ l++              ++l+dh+v+++++++R+ +
  CCE27018.1 222 AHLADELEELQPVLAKLKTEAAGDQS----------STSIHVIKYWVLGCYIATLTSY--FAvLTSpardasqlqktlspADLRDHDVMETILQCREAW 308
                 6899*************994333332..........579*******************..55477778999999999999******************* PP

  Sas10_Utp3  86 eK 87 
                 ++
  CCE27018.1 309 NR 310
                 86 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.84
  Sas10_Utp3  15 lepllsk 21 
                 l++l +k
  CCE27018.1 341 LASLEQK 347
                 2333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1409  (0.0785878); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4202.10
//
Query:       CCE27019.1  [L=830]
Description: uncharacterized protein CPUR_00491 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-13   50.9   0.0    5.8e-13   48.7   0.0    2.1  1  Vps51       Vps51/Vps67
  ------ inclusion threshold ------
       0.08   13.1   0.1       0.18   12.0   0.1    1.5  1  TcpA        Toxin-coregulated pilus subunit TcpA
      0.085   12.5   0.2       0.38   10.4   0.0    2.0  2  Fe-ADH_2    Iron-containing alcohol dehydrogenase
       0.38   11.2   3.9        5.5    7.5   0.3    2.9  2  PhoU        PhoU domain
        5.5    5.2  12.4        1.9    6.7   6.5    2.2  2  CDC45       CDC45-like protein
        7.1    6.4   7.5       0.89    9.3   2.4    1.9  2  RR_TM4-6    Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.9e-16   5.8e-13      17      83 ..      20      86 ..      11      88 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.9e-16
       Vps51 17 akstlkellkveasllseiraldselkalVydnYskLisasdtIrkmksemdkldqklselkqaisk 83
                 ++tl +++ +++sl+ +i+++ + l+++V+ +Y++L+ ++dtI++m++e +++++ l  ++ ++++
  CCE27019.1 20 GSYTLPQIRSLHKSLHVQIEEKSTRLRTQVGGSYRQLLGTADTIVHMRGENEQVQDLLGRMGGRCGR 86
                389*******************************************************999999875 PP

>> TcpA  Toxin-coregulated pilus subunit TcpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.9e-05      0.18      42     102 ..     209     273 ..     205     281 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.9e-05
                 EEE-HHHHH.HHHHHHG...GG-SEEEEEES---BGGGG--TTTS--BGGG-SEEEE-SSTT-B- CS
        TcpA  42 sdlskdqck.slvssva...dlfsfievkerataavadlgdfetvvadaaksvGviksikgGakt 102
                  d+ k+ c  sl  s++    +  fi v++ra+ ++ d+   e + a a+++  v++s++  +kt
  CCE27019.1 209 DDVVKALCAySLANSSGakhAISHFIRVRQRAMETTLDMDHEERTTATATTGQDVVRSLRLYTKT 273
                 677788886245555542223668***************889999*************9876665 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00013      0.38     182     238 ..     173     237 ..     155     251 .. 0.64
   2 ?   -1.5   0.0      0.56   1.7e+03     161     220 ..     490     549 ..     481     569 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
    Fe-ADH_2 182 aklsaamvqeaaeklvedkke..tealeelleal.....alsgigis.rpaSGsEHliSHaldml 238
                 a+++++ + +++++l +  ++  +++lee+ e       + +++++s    SG+ H iSH +  +
  CCE27019.1 173 AQQAVDAMGKSLDSLRRRLQRtmERLLEEVDEDAdiddvVKALCAYSlANSSGAKHAISHFIRVR 237
                 4556666666666666532221133444443332555558888888834459********99655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.56
    Fe-ADH_2 161 llgkytaladwklanevseplaklsaamvqeaaeklvedkketealeellealalsgigi 220
                 ++g + a++++  +++ ++ +++  +++++e+ +++++ ++ +++  +l e+l  s+++ 
  CCE27019.1 490 IIGDVKAVVEQLRKQRWDNDYDEIEDEETMETRQEALSREDPRKLQDTLDETLDASFAAL 549
                 567777777777777888888888888888888888876666666666666666666665 PP

>> PhoU  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.4     0.027        79      13      68 ..     158     214 ..     148     223 .. 0.72
   2 ?    7.5   0.3    0.0018       5.5      16      75 ..     523     580 ..     515     582 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.027
                 HHHHHHHHCT-H.HHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-SHHHHHHHHH CS
        PhoU  13 ddalealeekdt.ela.revierddeidrlekeiersllealakrqplaedlrellsl 68 
                 ++++++l+e+   e a ++v ++ +++d l+++++r  +e+l ++  +++d+++++ +
  CCE27019.1 158 RLLVKSLKEGRPsERAqQAVDAMGKSLDSLRRRLQRT-MERLLEEVDEDADIDDVVKA 214
                 6778899888644999777888999*********999.77775544444456666554 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0018
                 HHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHGG-SHHHHHHHHHHHHHHHH CS
        PhoU  16 lealeekdtelarevierddeidrlekeierslleal.akrqplaedlrellsllriardl 75 
                  eal+++d   +++   +d+ +d+ + ++e++ ++ l  ++++ ++   ++++l+r++rd+
  CCE27019.1 523 QEALSREDPRKLQDT--LDETLDASFAALEKH-IQQLwDQHSEHTSSGAMAIYLIRVVRDI 580
                 5899999*9999999..6***********999.666658855555558899********98 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.3     0.022        67     173     237 ..     505     574 ..     492     579 .. 0.60
   2 ?    6.7   6.5   0.00064       1.9     120     184 ..     687     753 ..     671     818 .. 0.53

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.022
       CDC45 173 sksdeeee.sddddersrkrrrse....psakklrrqlkkerrkyeavlekyysqgtsygesvsslmYsL 237
                 +++++ +e +d++  ++r+   s+    + +++l++ l +     e+ +++  +q + + +s ++ +Y +
  CCE27019.1 505 RWDNDYDEiEDEETMETRQEALSRedprKLQDTLDETLDASFAALEKHIQQLWDQHSEHTSSGAMAIYLI 574
                 3333333333333322222222221122445566777888889999999999999999999999999975 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00064
       CDC45 120 reayealeeeeesdeede..eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee.sddd 184
                 r++ e + +++ + + ++  eee+ +d++++ee e+  d++++++ ++++k ++k +++++ee  + +
  CCE27019.1 687 RKELEDVLSMDGEGDTRKqvEEEDTEDKEKGEEGEQ-GDRHQDKDASKRNKPNDKPNDQRKEEpAEPN 753
                 333333333333322222222222222222222222.2222222222222233332222222233333 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.64   1.9e+03      95     118 ..     510     530 ..     483     569 .. 0.47
   2 ?    9.3   2.4    0.0003      0.89      99     159 ..     695     753 ..     650     769 .. 0.43

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.64
                 XXXXXXXXXXXXXXXX.XXXXXXX CS
    RR_TM4-6  95 eaeeekeeeeepeaeaeekadaen 118
                   e e+ee+ e+++ea  ++   +
  CCE27019.1 510 YDEIEDEETMETRQEALSRE---D 530
                 22222222222222222211...1 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0003
                 XXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXX CS
    RR_TM4-6  99 ekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkakskkkeeaeae 159
                 +++ e +++++  e++d+e++ek e+ ++  + ++++ +++ +k+  k++ ++k+e ae +
  CCE27019.1 695 SMDGEGDTRKQV-EEEDTEDKEKGEEGEQ-GDRHQDKDASKRNKPNDKPNDQRKEEPAEPN 753
                 233333333333.3444444444444443.2222222222222233333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1523  (0.0849462); expected 358.6 (0.02)
Passed bias filter:                      914  (0.0509789); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 5431.49
//
Query:       CCE27020.1  [L=291]
Description: related to delta3-cis-delta2-trans-enoyl-CoA isomerase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-22   77.6   0.0    2.3e-21   76.3   0.0    1.5  2  ECH_1      Enoyl-CoA hydratase/isomerase
    1.6e-10   41.0   0.1    2.3e-10   40.5   0.1    1.4  1  ECH_2      Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
       0.17   11.8   0.2       0.28   11.1   0.2    1.3  1  Serglycin  Serglycin


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   3.9e-25   2.3e-21       5     174 ..      14     190 ..      10     192 .. 0.89
   2 ?   -1.9   0.0      0.27   1.6e+03     181     232 ..     226     278 ..     214     286 .. 0.71

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 3.9e-25
                 TEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHC..HHHHHHHCCHHH.HHHHH....HHSSSEEEEEE- CS
       ECH_1   5 gvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeek..akqallkeevle.lwtkl....ytvpkpviaavn 96 
                  va +++ + +++ als+     l+ al+++ +  +v   vLtG + +++aGad +++ e  +    + + +++ ++ l+  +    ++ pk+++  +n
  CCE27020.1  14 RVAILTICNEKKLGALSHDEYSALAVALNEIATRDEVVTTVLTGTGWFYSAGADATAAREAPTlhTPNHCQWFQNYAaLQLTIthafSHHPKILVVGLN 112
                 689999*************************************************999887656777778887655514444411114679******** PP

                 SEEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEE CS
       ECH_1  97 GaaigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvv 174
                 G aig  + l   +D++++a +a    +++ lGl+++ g++  lar++G ++A+e+ll+gkk+ a+ ++  G v++++
  CCE27020.1 113 GPAIGFSAALIAWADFIYCAPHAYLFTPFSSLGLVAEGGASSALARRLGAARANEALLMGKKMDAEVLKACGFVNEIF 190
                 ***************************************************************************996 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHSCHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHCTSHH CS
       ECH_1 181 eealelaeklaekspaalrqlkealnakle.dalaeqleaeaklfestfskdd 232
                 e   +l e+l+ +s++  + l   l+++l+  + ++ + a  + f   + +++
  CCE27020.1 226 EVEEQLGEHLNGESILETKKLLRRLDRPLDdAQNVQEIFAGLDRFRRGIPQEE 278
                 44456788899999999999999999999866666666666666665555555 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1   3.8e-14   2.3e-10       2     173 ..      16     191 ..      15     285 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 3.8e-14
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-TH..H..HHHHHHHHHHHHHHHC-SS-EEEEE-B CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkke..e..eeffreeYklnyliatypkpvvalmdG 96 
                 +++t+ ++k+l aLs++  +al+ al+e+++ dev + vl+g+g   ++AG D  a +ea + ++ +  +  +++ + + ++ ++ ++ pk +v  ++G
  CCE27020.1  16 AILTICNEKKLGALSHDEYSALAVALNEIATRDEVVTTVLTGTG-WFYSAGADATAAREAPTLHTPNhcQwfQNYAALQLTITHAFSHHPKILVVGLNG 113
                 689999************************************88.9*************999885552235788888999999999************* PP

                 EEETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE-- CS
       ECH_2  97 ivmGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvp 173
                  ++G  ++l + + f     ++ +  P  ++Gl+ + G+s  L+r  g + +    l G++++++ + a+g+ + +++
  CCE27020.1 114 PAIGFSAALIAWADFIYCAPHAYLFTPFSSLGLVAEGGASSALARRLGaARANEALLMGKKMDAEVLKACGFVNEIFD 191
                 *******************************************997662667777799*******9999999987765 PP

>> Serglycin  Serglycin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   4.7e-05      0.28      90     106 ..     191     205 ..     159     214 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.7e-05
   Serglycin  90 dysgsgsGsGsGsGsgs 106
                 d+ gsgsGsGsG  s  
  CCE27020.1 191 DVGGSGSGSGSG--SRG 205
                 334444444444..433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2118.75
//
Query:       CCE27021.1  [L=440]
Description: related to DNA-directed RNA polymerase A (I) chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.3e-103  346.9   0.2   1.7e-103  346.5   0.2    1.1  1  RNA_pol_I_A49  A49-like RNA polymerase I associated factor


Domain annotation for each model (and alignments):
>> RNA_pol_I_A49  A49-like RNA polymerase I associated factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.5   0.2  9.4e-108  1.7e-103       1     382 [.      56     434 ..      56     437 .. 0.96

  Alignments for each domain:
  == domain 1  score: 346.5 bits;  conditional E-value: 9.4e-108
                    -TT-EEEEEE..........E-----EEEEEE-.SSEEEEEE--HHHHHHE...EEEEEEEETTTTEEEEEEE-EEEEEEEESSTTTXXXXXX..X CS
  RNA_pol_I_A49   1 peslkFslyk....ekekskkrkkselllvget.erleYvgknegegssaenllrylvGvydketgelelypaplftlrpsvkakkseseeeeede 91 
                    p++l F+ y+    +k+ksk+ + +elll++++ ++l+Y++++eg  +sa  l++++vGvyd++tg+l++++a+ +++r  v+ak+ e ++ e++ 
     CCE27021.1  56 PQKLAFRSYRardsTKTKSKHGRTKELLLHSNShQTLDYTAREEGPRQSAP-LVNHFVGVYDPKTGKLDVVEAKRMVIRGLVRAKQVEGTTGESEA 150
                    6899******999889999999*************************9987.67****************************************** PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  RNA_pol_I_A49  92 sktyaekraaLgeaFGtkKakkalrsrernkvdse........aleevedailesikeataslptkeelqaavassrplPpanldAtepedVYpls 179
                    +k+++++r +Lg++FGtkKakka+r++++n++ ++        + + + +ail+s+ + + ++ tkeelqaav++++p+P+anl+A+e++dVY+++
     CCE27021.1 151 NKSTMDRRVDLGQTFGTKKAKKAIRDNALNAIAAKmkpgeapaEINGAGKAILQSVGKLAMQMSTKEELQAAVNEAKPVPRANLEAEEIQDVYDPK 246
                    *********************************6666667777***************************************************** PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXX.XXX........XXXXXXXXXX CS
  RNA_pol_I_A49 180 dlissaelealevkalekaadkeervellpykskssfvakrlekllqkseeaakkklrllyYlslLlkfysarrsvrkrgte....keklkekles 271
                    ++i+s++l+ +++++++++a+++e +     +++s+fva r+++++++++  a ++lr+l+Y +++l+fy  ++++++rgt+    ++kl+e l++
     CCE27021.1 247 SIIGSDILNLVPIREWQEKAEHREGI-----QTNSRFVAARVNAIATNHD--AITRLRVLRYFNFVLTFYLITKPGKQRGTRqvppRDKLRELLQP 335
                    **************************.....89**************999..*****************************9************** PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  RNA_pol_I_A49 272 vpeiiidkllrkFteessnnkgkskrlskshkdkLlayilalaLhldnfsvdltdLaedLklkpkklnelfkelGckiskltaaeaealglekkek 367
                    +pe+++++++rkF++++         ++k+h d+L+a++++ a+++dnf+vd+++L++dL+l++k++n++f+e+G ++++++++          + 
     CCE27021.1 336 APEAVVENIRRKFSDAGV--------VRKFHIDLLMAHCCVYACIVDNFEVDTQNLRDDLRLDQKSMNNYFREIGGRVKPVSKTAEG------GHA 417
                    ******************........********************************************************87743......344 PP

                    X..XXXXXXXXXXXXXX CS
  RNA_pol_I_A49 368 i..avLklPLkfpkvrr 382
                    +   +L+lPL+fpk++ 
     CCE27021.1 418 VylGKLALPLDFPKQKS 434
                    445***********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3364.51
//
Query:       CCE27022.1  [L=84]
Description: uncharacterized protein CPUR_00494 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.098   12.9   0.0       0.13   12.4   0.0    1.3  1  MBDa      p55-binding region of Methyl-CpG-binding domain pro


Domain annotation for each model (and alignments):
>> MBDa  p55-binding region of Methyl-CpG-binding domain proteins MBD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.5e-06      0.13      12      32 ..       4      24 ..       1      37 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.5e-06
        MBDa 12 krrtdlslalPiRqTssIFkq 32
                kr  + +l  PiR T++I+ +
  CCE27022.1  4 KRSLERRLRSPIRATACIYGR 24
                566678999*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 637.80
//
Query:       CCE27023.1  [L=343]
Description: related to calmodulin-binding protein kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-37  127.5   0.1    1.4e-36  126.2   0.1    1.6  2  Pkinase         Protein kinase domain
    2.1e-11   43.6   0.1    3.2e-11   43.0   0.1    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    6.5e-06   25.7   0.0    1.7e-05   24.3   0.0    1.6  2  Kinase-like     Kinase-like
    0.00036   19.4   0.0    0.00053   18.9   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
     0.0047   16.3   0.0     0.0082   15.5   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   0.1   3.9e-40   1.4e-36      88     264 .]       3     179 ..       1     179 [. 0.84
   2 ?   -1.7   0.0      0.42   1.5e+03     192     254 ..     266     325 ..     263     333 .. 0.60

  Alignments for each domain:
  == domain 1  score: 126.2 bits;  conditional E-value: 3.9e-40
                 HHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.....EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHH CS
     Pkinase  88 llerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge.....lKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvD 179
                 l++r+  l+e +++ i++q+l+gl+ylHskgiiHrDlKpeNiL+  + +     ++++DF  ++  ++s  l+++vgt +Y APE+    + + +++vD
  CCE27023.1   3 LINRHNRLKEFDCRIIIRQVLRGLSYLHSKGIIHRDLKPENILLAYSPKmayhrVMLSDFATCAIPRRSR-LKTMVGTANYQAPELHtaPHDDQTPAVD 100
                 7889999**************************************555558999*******999888877.***************97666778***** PP

                 HHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHT..HHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 180 vWslGvilyelltgkppfsgekgkekvekeldq..lekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 +W++G++ + +lt +          +v ++l q     il+ l++  + ++ + ++s++ k+++ ++l++ p++Rlta e+  h++l
  CCE27023.1 101 MWAVGIVTAIMLTASSETD------EVIAKLCQssQDIILQYLRC--NIFRPDLKLSKNSKKFVWQCLQRCPQDRLTAFEAECHDWL 179
                 ***********99887777......33334444112234444443..456677789******************************7 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.42
                 HSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT CS
     Pkinase 192 tgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt 254
                 +g++pf   k  +k ++ ++++  +  +l  ++     a e+s+++ +l ++ l+k  k+Rl+
  CCE27023.1 266 SGSQPFT--KVVTKLSHGARDH-GSGSTLISETTLATDAVEFSQDMAHLSNQRLDKPAKRRLS 325
                 5666666..3333334444442.2222222334555666778999999999999999999987 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.1     9e-15   3.2e-11      98     251 ..       8     169 ..       2     176 .. 0.79

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 9e-15
                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.....TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.....nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDv 188
                  ++l+  d   ++ qv +G++yL+sk ++Hrdl   N+Ll+       + v +sDf+ +       + ++ ++     ++ apE  ++ +   t + D+
   CCE27023.1   8 NRLKEFDCRIIIRQVLRGLSYLHSKGIIHRDLKPENILLAYspkmaYHRVMLSDFATCAIP----RRSRLKTMVGTANYQAPELHTAPHddQTPAVDM 101
                  5566666677899**************************98676667899*****998765....4444455667889*****98876655999**** PP

                  HHHHHHHHHHHTTSSGT...TTTS..HHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS-- CS
  Pkinase_Tyr 189 WsfGvllwEiftlgesp...ypgl..kneevleklkegkrlekpekcpeelyelmkkcweedpeeRpt 251
                  W+ G+++  ++t ++++   +++l  ++++++ ++ + +  +   k +++ ++++ +c+++ p++R t
   CCE27023.1 102 WAVGIVTAIMLTASSETdevIAKLcqSSQDIILQYLRCNIFRPDLKLSKNSKKFVWQCLQRCPQDRLT 169
                  ******999999877665553333345566777777777778888999999999*****999999976 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.6e-09   1.7e-05     137     250 ..       6     118 ..       2     166 .. 0.78
   2 ?   -2.2   0.0      0.56     2e+03     172     197 ..     252     277 ..     240     282 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.6e-09
  Kinase-like 137 thkkleti.arlllTlqlirlaanLqakglvhgkftvdnlll.....dekgglmlggftaLvragtkvvlseve.kgfaPpEllgsrggytrknktkm 227
                  +h++l++  +r ++  q++r   +L++kg++h +++++n+ll     + + ++ml +f        +    +v  + ++ pEl  +        +   
   CCE27023.1   6 RHNRLKEFdCRIII-RQVLRGLSYLHSKGIIHRDLKPENILLayspkMAYHRVMLSDFATCAIPRRSRLKTMVGtANYQAPELHTA-------PHDDQ 95 
                  56666554166666.99***********************99666666789*******8876544433337777688******999.......34577 PP

  Kinase-like 228 thkldaWqlGlviyriwclklPl 250
                  t ++d W++G+v   +  +   +
   CCE27023.1  96 TPAVDMWAVGIVTAIMLTASSET 118
                  99*********988877666555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.56
  Kinase-like 172 vdnllldekgglmlggftaLvragtk 197
                   +nl+++++ +++l g ++  ++ tk
   CCE27023.1 252 LRNLVFKNESPIILSGSQPFTKVVTK 277
                  47999999999999999999888776 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.5e-07   0.00053     312     384 ..      19      86 ..      12      96 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.5e-07
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaie 384
                     +r++++g+  L+  +gi+HrD   +Nil+  s k + ++ +L+D+          ++s  ++ +GT+++ a e
      CCE27023.1  19 IRQVLRGLSYLH-SKGIIHRDLKPENILLAYSPKMAYHRVMLSDFATCAIP----RRSRLKTMVGTANYQAPE 86 
                     688999******.*****************99***********98543322....334456677877776655 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.3e-06    0.0082     121     170 ..      16      66 ..       2      76 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.3e-06
         Kdo 121 rallkavgrliaklhragvnHadlyaknillqqee.eeeaeiwliDldkar 170
                 r ++++v r  + lh+ g+ H+dl + nill      +  +++l D+  ++
  CCE27023.1  16 RIIIRQVLRGLSYLHSKGIIHRDLKPENILLAYSPkMAYHRVMLSDFATCA 66 
                 67889999999********************98764677888888998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2500.54
//
Query:       CCE27024.1  [L=336]
Description: uncharacterized protein CPUR_00496 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-42  144.8   0.0    2.6e-42  144.4   0.0    1.1  1  Zeta_toxin  Zeta toxin
    3.6e-07   30.4   0.0    7.4e-07   29.4   0.0    1.4  1  AAA_33      AAA domain
    0.00011   22.2   0.0    0.00016   21.6   0.0    1.3  1  TsaE        Threonylcarbamoyl adenosine biosynthesis protein 
  ------ inclusion threshold ------
      0.025   14.9   0.0      0.053   13.9   0.0    1.6  1  AAA_16      AAA ATPase domain


Domain annotation for each model (and alignments):
>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.4   0.0   5.8e-46   2.6e-42      11     194 ..      40     233 ..      34     238 .. 0.94

  Alignments for each domain:
  == domain 1  score: 144.4 bits;  conditional E-value: 5.8e-46
  Zeta_toxin  11 psqerPklillgGqpGAGKselaellkdele....rqgnvvrldpDdlRelhPeyeeilkadpkkaseltqkdaselvekllqeaiengyniivegtlr 105
                 ps+ rP ++l +Gq+GAGK+++++++ ++++     ++   +l +D+++ +hP+y+ ++   p+ as+ t +da+++ +++ +e++ + ++++ve+++r
  CCE27024.1  40 PSRGRPLAVLTVGQTGAGKTRISRAILAAMHvvrrDANVPAHLIADTYKIYHPDYAHLILSAPHLASAATGPDARRWLAMAAEEVVRRAMDVLVESACR 138
                 6889**************************99974444469********************************************************** PP

  Zeta_toxin 106 spdvvkklaealkkaGYevevvvvavkkelSrlgvldRyeeevae......g.Rlvpkeehdeafeglresvealeeekqldrvkikdrdgktvly 194
                 +p ++++l++ + +a+Y++evv++av+  lSrlg+l Ry e++ e      + Rl+p ++hde++ gl  ++  l+++ ++d+v++++r++  v y
  CCE27024.1 139 HPADFEDLVRIFSEANYRLEVVLLAVPAPLSRLGILVRYYEKLPEaqsgklPvRLTPQTVHDESYGGLVGAASFLDRSGLADQVIVVRRGN-MVAY 233
                 ******************************************66667899977************************************99.6666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.6e-10   7.4e-07       2     120 ..      48     178 ..      48     189 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.6e-10
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdt.............lrrrlfg.......tdqqsktdytrvldrlyqilnelarkalsagrnvildatnl 80 
                 vl+vG  G+GK+  ++ +l+  ++ +++ d+             +                +++  ++   ++++++l+  a+++ +++ +v++ + ++
  CCE27024.1  48 VLTVGQTGAGKTRISRAILA--AMHVVRRDAnvpahliadtykiY-----HpdyahliLSAPHL-ASAATGPDARRWLAMAAEEVVRRAMDVLVESACR 138
                 799***************94..57777777766777543333321.....12232243323333.55667788************************** PP

      AAA_33  81 srrerarflklarrlgvpvrivvvetdeetlkeRlakRaa 120
                  +++++++++++++++++ ++v + ++  + +  + +R+ 
  CCE27024.1 139 HPADFEDLVRIFSEANYRLEVVLLAVPAPLSRLGILVRYY 178
                 **************************99888777777766 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.7e-08   0.00016      22      74 ..      48      97 ..      19     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3.7e-08
                EEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEEEE..SSEEEEE-TT- CS
        TsaE 22 ilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeYelekeglyHfDlYRl 74
                +l  G+ GaGKT ++r++++a++v   + + P   ++ +Y     ++yH D   l
  CCE27024.1 48 VLTVGQTGAGKTRISRAILAAMHVVrrDANVPAHLIADTY-----KIYHPDYAHL 97
                7788******************996589************.....4788887655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.2e-05     0.053      19      47 ..      40      68 ..      37     161 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
      AAA_16 19 vrsgrpelvllsGesGvGKsslvrellra 47
                 ++grp +vl +G+ G GK+++ r++l a
  CCE27024.1 40 PSRGRPLAVLTVGQTGAGKTRISRAILAA 68
                579**********************9973 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2555.28
//
Query:       CCE27025.1  [L=387]
Description: uncharacterized protein CPUR_00497 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-26   93.9   0.0    1.6e-26   93.4   0.0    1.2  1  DDE_Tnp_1_7  Transposase IS4


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_7  Transposase IS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.0     9e-31   1.6e-26       1     240 [.      42     348 ..      42     363 .. 0.90

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 9e-31
  DDE_Tnp_1_7   1 spvelFelflpdkilerivkatNayakqk..........................................................kkwleltaeEl 40 
                  +pv +F++f p+ ++e+ v  tN+    k                                                          + w ++ a+El
   CCE27025.1  42 DPVVVFQKFCPEYLVEKWVTWTNDWVSHKinhpedaassndaaglndvaalndvaglsnfaalnhfggfndfadadessdeaddvslRRWVPTCAAEL 139
                  5788888888888888888888888887788888888888888888888888888888888888889999999999999999999999********** PP

  DDE_Tnp_1_7  41 kaFlGllllmglvrlpsvedyWstkdfyg......npllseiMsreRFeeilsalhladnstkka..ekdklkkvrelidslnermqkvyrpsqtlvl 130
                  + Fl++l  +gl+  p+++dyW++++ +g      ++ +++ M+++RF+ +++++++ d+ ++++   ++++  v +  d  ++  +++++p+  ++l
   CCE27025.1 140 YVFLAFLTYIGLHPEPNLSDYWREEPPIGlgpgwpTHRIHKFMTYRRFKLLFRNVRVFDPFDAPEdnLTQPVSRVSNWPDPVQQAAADLLQPGLKITL 237
                  **************************666667777999*********************98887755679**************************** PP

  DDE_Tnp_1_7 131 deslvlfkgrvpfkqylpgkprkvgiklhvlcdsqtgyilalelyegearnlrlsrelg..ktnalvlrLleplqgkgrvvvmdnfftslellqeLak 226
                   e +++f gr   ++  p+k  + g+++++l+     yi ++    g++ +l+l+ e g  +t+++vl L+   + ++r  ++dn +t++ell  L++
   CCE27025.1 238 EEGMIRFTGRSGAEVTTPRKSIPEGLRIWALAA-NGHYIRWIFRLPGHRPKLQLPIEPGnaSTQSVVLDLMSLSATTNRQAFFDNLLTTIELLGILRE 334
                  *********************************.****************999965444327************************************ PP

  DDE_Tnp_1_7 227 kgtyavGtlkknrs 240
                  +g   +Gt++ ++ 
   CCE27025.1 335 EGNVPTGTARLTTG 348
                  ********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 3151.70
//
Query:       CCE27026.1  [L=162]
Description: VMA-11 V-type ATPase subunit C` (VMA-11) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-28   97.4  32.5    6.4e-18   64.8  11.2    2.1  2  ATP-synt_C  ATP synthase subunit C
  ------ inclusion threshold ------
          2    6.9   8.0        5.2    5.5   0.0    2.7  3  FPN1        Ferroportin1 (FPN1)


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7  13.3     1e-13   9.2e-10       2      60 .]      17      75 ..      16      75 .. 0.97
   2 !   64.8  11.2   7.2e-22   6.4e-18       1      60 []      97     156 ..      97     156 .. 0.99

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1e-13
                HHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C  2 gaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60
                g++ a++++ +g+++g++k g ++++    +p+l++k li+++++++ia+y L++++++
  CCE27026.1 17 GIAAAMVFGSVGAAYGTAKSGIGIAGVGTFRPDLIMKCLIPVVMSGIIAVYSLVISVLI 75
                889999**************************************************997 PP

  == domain 2  score: 64.8 bits;  conditional E-value: 7.2e-22
                 HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   1 lgaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60 
                 l++gl+vG+++l++G++iG++g++g+ra  ++ ++f+++++il+f e+++lygLival+l
  CCE27026.1  97 LACGLSVGMTGLAAGYCIGVVGDKGVRAYMEQSRIFVGMVLILIFGEVLGLYGLIVALLL 156
                 79********************************************************97 PP

>> FPN1  Ferroportin1 (FPN1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2     0.048   4.3e+02     307     330 ..      15      38 ..      12      45 .. 0.87
   2 ?    5.0   0.9   0.00081       7.3     158     194 ..      49      85 ..      45     103 .. 0.82
   3 ?    5.5   0.0   0.00058       5.2     256     290 ..     123     157 ..     116     161 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.048
        FPN1 307 vtgilgTfafpllekrigllrtGl 330
                 ++gi+++++f  +   +g+ ++G+
  CCE27026.1  15 MAGIAAAMVFGSVGAAYGTAKSGI 38 
                 689999999999999999999997 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.00081
        FPN1 158 Dllckllapllvglllsfvslkiaigfilvvnlvsvv 194
                 Dl+ k l p++++ +++++sl+i++ ++  ++  s  
  CCE27026.1  49 DLIMKCLIPVVMSGIIAVYSLVISVLIAQDLAPPSAS 85 
                 9***********************9987766655555 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.00058
        FPN1 256 keYvrqpvflaslalslLyltVLsFdtlmtaylks 290
                 ++Y++q+ ++ ++ l l++  VL+   l++a l +
  CCE27026.1 123 RAYMEQSRIFVGMVLILIFGEVLGLYGLIVALLLN 157
                 89***********************9999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1248.37
//
Query:       CCE27027.1  [L=239]
Description: uncharacterized protein CPUR_00499 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1967.89
//
Query:       CCE27028.1  [L=78]
Description: uncharacterized protein CPUR_00500 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 668.10
//
Query:       CCE27029.1  [L=439]
Description: uncharacterized protein CPUR_00501 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-33  113.0   0.0    1.2e-32  112.0   0.0    1.6  1  Nse4_C         Nse4 C-terminal
    2.6e-18   65.9   0.6    2.9e-17   62.5   0.0    2.7  2  Nse4-Nse3_bdg  Binding domain of Nse4/EID3 to Nse3-MAGE
  ------ inclusion threshold ------
        9.6    6.7  11.1        1.1    9.7   0.5    3.3  3  PBP1_TM        Transmembrane domain of transglycosylase PBP1 


Domain annotation for each model (and alignments):
>> Nse4_C  Nse4 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.0     2e-36   1.2e-32       2      91 .]     332     423 ..     331     423 .. 0.91

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 2e-36
      Nse4_C   2 islfkfvinpksFaqtVeNlFylSfLvkdgkvkieldedglpvlee..teeeeeekakeeeakkkqavlsldmetWkelieafdikepliph 91 
                 i+l++fv+np sF+qtVeN+Fy+SfL++d +++ielde+glp++ +   +++ +e + +++a+k+qa+ls+d etW+e+i++f+i++p+iph
  CCE27029.1 332 IDLMRFVVNPYSFGQTVENMFYVSFLIRDARIEIELDEHGLPAIAPveRDPSGDETQPRHGASKHQAILSMDEETWREIIDVFQITQPMIPH 423
                 99******************************************6521566666666669*******************************8 PP

>> Nse4-Nse3_bdg  Binding domain of Nse4/EID3 to Nse3-MAGE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   4.8e-21   2.9e-17       1      56 []     127     180 ..     127     180 .. 0.98
   2 ?    0.1   0.3      0.15   8.7e+02      45      55 ..     191     206 ..     185     207 .. 0.62

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 4.8e-21
  Nse4-Nse3_bdg   1 DSrlLvsaSelaaekarnlklg..gggfDvdeFvsklktfMggdrfegageeedddde 56 
                    DSrlLvs+++l+++ka +l +g  + g+DvdeFvsk++t+M++    g+g+ +d++++
     CCE27029.1 127 DSRLLVSTTDLSYRKALRLAHGkySEGIDVDEFVSKAITYMRH----GGGIIDDEAPD 180
                    9******************************************....*******9876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.15
  Nse4-Nse3_bdg  45 e.....gageeedddd 55 
                          g++++eddd+
     CCE27029.1 191 VtrrrsGRHDDEDDDE 206
                    3444446777788765 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.3     0.061   3.6e+02      10      48 ..      34      70 ..      28     100 .. 0.65
   2 ?    9.7   0.5   0.00019       1.1      18      48 ..     185     212 ..     179     233 .. 0.58
   3 ?   -0.5   0.1      0.27   1.6e+03      41      55 ..     306     320 ..     291     330 .. 0.54

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.061
     PBP1_TM 10 GRkGkkakakparkkasrrrrrdddyddeyddeedDddd 48
                G k+k++++ +a   asr  +r +  dd+++ +  D d+
  CCE27029.1 34 GSKRKRTGTVAAEPSASR--KRSETPDDNIETDVFDPDQ 70
                567777766655555555..5555555555555555443 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00019
     PBP1_TM  18 akparkkasrrrrrdddyddeyddeedDddd 48 
                 +++ r  ++rr+ r dd dd   de  Dd d
  CCE27029.1 185 QRQRRTVTRRRSGRHDDEDD---DEVGDDGD 212
                 23333333333334555444...55555443 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.27
     PBP1_TM  41 deedDdddddeeeev 55 
                 d  dDd +d e+  +
  CCE27029.1 306 DLIDDDMEDAEKTRL 320
                 334444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1069  (0.0596241); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 3597.67
//
Query:       CCE27030.1  [L=973]
Description: probable 1-phosphatidylinositol 3-kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-57  192.4   2.7    7.1e-57  191.8   2.7    1.2  1  PI3Ka           Phosphoinositide 3-kinase family, accessory d
    6.9e-44  150.5   0.1    4.7e-41  141.3   0.1    2.5  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
      2e-32  112.0   0.0      2e-32  112.0   0.0    2.2  1  PI3K_C2         Phosphoinositide 3-kinase C2
     0.0042   16.6   6.0     0.0042   16.6   6.0    1.7  2  SDA1            SDA1
  ------ inclusion threshold ------
      0.012   15.9   0.0      0.031   14.6   0.0    1.7  1  C2              C2 domain
      0.027   13.7   4.8      0.055   12.7   4.8    1.4  1  TRAP_alpha      Translocon-associated protein (TRAP), alpha s
       0.13   11.2   9.3       0.24   10.3   9.3    1.3  1  DUF2722         Protein of unknown function (DUF2722)
       0.18   10.8   3.8        0.3   10.1   3.8    1.3  1  SLC12           Solute carrier family 12
       0.21   10.3   2.1        0.4    9.4   2.1    1.4  1  Presenilin      Presenilin
       0.23   11.1   8.6        1.4    8.5   6.0    2.4  2  FAM176          FAM176 family
       0.25    9.8   6.6       0.42    9.1   6.6    1.3  1  RRN3            RNA polymerase I specific transcription initi
        0.5    9.3   2.9       0.92    8.4   2.2    1.7  2  DUF913          Domain of Unknown Function (DUF913)
       0.76    8.8  15.2        2.1    7.3  15.1    1.7  2  Roughex         Drosophila roughex protein
       0.79    9.1  24.2     0.0097   15.3  15.8    1.9  2  CobT            Cobalamin biosynthesis protein CobT
       0.87   10.0   4.6        2.6    8.5   4.6    1.7  1  RNA_pol_Rpc4    RNA polymerase III RPC4
        3.2    5.9  14.4       0.12   10.7   8.0    1.7  2  CDC45           CDC45-like protein


Domain annotation for each model (and alignments):
>> PI3Ka  Phosphoinositide 3-kinase family, accessory domain (PIK domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.8   2.7   6.3e-60   7.1e-57       1     165 [.     382     595 ..     382     609 .. 0.97

  Alignments for each domain:
  == domain 1  score: 191.8 bits;  conditional E-value: 6.3e-60
                 --S-SSCHHHHHHHHHCHS-TTS---HHHHHHHHHTHHHHCTSGGGHHHHHTTS-SSSHHHHHHHHHHHTTSHHTTHHHHTTTTSTTS--HHHHHHHHH CS
       PI3Ka   1 kdlkpdekerdeleaiiakdPltkltaeekeliwkfryylknnkkaltklLqsvkwseesevkealelldsWaeididdaLeLLdskfkdesvreyavk 99 
                 kdlkp++k rdel+ i+++ P+  l+ ee++l+wkfry l++ k+altk+ +sv+w+++se+k+a+++l +W+eid+ddaLeLL+++f ++ vr+yav 
  CCE27030.1 382 KDLKPNSKVRDELNLIMSYSPTHVLSPEEADLVWKFRYHLTRDKRALTKFVKSVNWTDQSESKQAIQVLGRWTEIDVDDALELLGPSFDNSAVRSYAVD 480
                 689************************************************************************************************ PP

                 HHHHSHHHHHHHHHHHHHHHHGGS.................................................SSSSSHHHHHHHHHHHHSHHHHHHHH CS
       PI3Ka 100 vLekasdeelllYllQLVqalkye.................................................pikdsalaefLlkralknkrlghfff 149
                 +L+ka+d+elllYllQLVqalkye                                                   + s la+fL++ra  n +lg+ f 
  CCE27030.1 481 RLRKADDQELLLYLLQLVQALKYEhiptadaddaddaddtpdnteqdqdqdqeqeqeqdqdqdqqqeqeeqesTQDSSSLARFLIQRAAANFLLGNYFH 579
                 ************************************************************************888999********************* PP

                 HHHHHHHHCCTHHHHH CS
       PI3Ka 150 WyLkseiedkevserf 165
                 WyL +e++d++ ++ +
  CCE27030.1 580 WYLMVECDDQSPEQGI 595
                 *******988776655 PP

>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3   0.1   4.2e-44   4.7e-41       2     249 ..     715     918 ..     714     919 .. 0.95

  Alignments for each domain:
  == domain 1  score: 141.3 bits;  conditional E-value: 4.2e-44
                     EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHHHHHHCHCHC CS
  PI3_PI4_kinase   2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasveslrvaldkkk 96 
                     +++i+k+gddlrqd+l++q+++lmd++l+ken++++    l +y+++++++ +g  ++v+ s+++  + +++++                     
      CCE27030.1 715 YPIIFKLGDDLRQDQLVIQIITLMDQLLQKENLDLK----LSPYKILATSTTAGASQFVQ-SQSLSAIASKYRT--------------------- 783
                     899********************************9....*******************9.58********994..................... PP

                     CHHHHHCCHHHHHHTSSTTHHHHHHHHHSSSHHHHHHH....HHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHCSS CS
  PI3_PI4_kinase  97 lkkekklkfekrtalkpksgllqeFvkkspsaeewlea....rkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewkll 187
                                       +  l ++  ++p+ ++ l +    ++++++s+a+++v++yilg+gDRhldN+l+   +g+++h DfG+il++++k +
      CCE27030.1 784 ------------------NPALAYLRHHNPDDKQPLGVrqetLDTYIKSCAGYCVITYILGVGDRHLDNLLL-APDGHFFHADFGFILGRDPKPF 859
                     ..................5789999999999988877777779*****************************.********************99 PP

                     SS-.SSSSS.S-THHHHHHT..STTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase 188 pfpqekvPf.rltrelvlai..dpskdeglfresceealealrrdqnlltrllkkavkdglilwe 249
                            P+ +l +e+v+ +   +s  ++ f+++c+  ++alr+ +nl+++l+ +++++++++++
      CCE27030.1 860 A------PLvKLSKEMVECMggVNSDLYNRFKQYCFLSYAALRKSSNLILNLFGLMLHANIPDIR 918
                     9......9************988999***********************************9975 PP

>> PI3K_C2  Phosphoinositide 3-kinase C2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.0   1.7e-35     2e-32       2     140 .]      57     223 ..      56     223 .. 0.94

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 1.7e-35
                 SSEEEEEEEEECTTEESSEEE.E-S-SETT.TTTEEEEEEEEEEECCCS-TTEEEEEEEEEEEECTC....EEE-EEEEEEEESC-TTSCCGGCEEEEE CS
     PI3K_C2   2 seklyvevqlyhggkqlclpvqstklksfsfksikwnewltfpiqisdLPrsarLvitiwevkgkeks...eeveplgwvnlsLFdkkgiLrqGkqkLk 97 
                 +++l+v+vq+  g k+l+ pv +t +k+f+    kwnewl +pi+++ LP++arL+itiw+++   ++    +++p+g+++ls+Fd++++ ++G+qk  
  CCE27030.1  57 YSDLFVTVQVWAGSKPLTVPV-QTAYKPFR-LERKWNEWLELPITYKSLPADARLAITIWDLSPTGGKtaiGHSIPFGGTTLSMFDSDNQVQKGRQKCL 153
                 789******************.********.******************************99887777776669************************ PP

                 ECCS-----SHH............................SSSCHCCCCCCCHTTSSS-CCCCHTTTCCC CS
     PI3K_C2  98 lwtsketdgsvet...........................edelnrlekllkkyergqvekvewldrltf 140
                 l   k +dg+ +                             +el+r+ekl kk+e g++ +v+wld++ f
  CCE27030.1 154 LHRHKFADGTENSttpaliatkkkaalqngggggllldkdAEELDRMEKLFKKHEMGEIPRVDWLDQMVF 223
                 98888888777777799*********************99999***********************9875 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.6       1.7   1.9e+03     142     157 ..     255     270 ..     194     281 .. 0.60
   2 !   16.6   6.0   3.8e-06    0.0042     103     176 ..     436     556 ..     400     661 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.7
        SDA1 142 eeeeeeekeekeeeee 157
                   +++ +++ +ee++e
  CCE27030.1 255 RTDNPHSDDGDEEDAE 270
                 1111111111111111 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 3.8e-06
        SDA1 103 dwevesdddseedseggwidvesdee................................................eieesdesedeeeeeeeeeekeeke 153
                 +w  +s+++++ ++ g w +++ d++                                                +++++d + d++ +++e+++++++e
  CCE27030.1 436 NWTDQSESKQAIQVLGRWTEIDVDDAlellgpsfdnsavrsyavdrlrkaddqelllyllqlvqalkyehiptaDADDAD-DADDTPDNTEQDQDQDQE 533
                 45555555555566677777777777778888888888888888888888888899999999999988866644333333.222222222222222222 PP

        SDA1 154 eeeeeeeeeeeeeeeeeeeeeke 176
                 +e+e+++++++++e+ee+e+ ++
  CCE27030.1 534 QEQEQDQDQDQQQEQEEQESTQD 556
                 22222222222222222222222 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.7e-05     0.031      21      83 ..      53     127 ..      22     145 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.7e-05
                 S....CEEEEEEEE.....ECEEEEEE-SCSSSSSSEEEEEEEEEESC...HTTSEEEEEEEEECSSSTEEEEEE CS
          C2  21 s....sdpyvkvsl.....dgkqkakTrviknslnPvWnekftfevae...leeakLeveVfdndrlskddfiGk 83 
                 +    sd +v+v++       ++ ++T  ++  l+ +Wne ++++++    +++a+L ++++d + ++++  iG+
  CCE27030.1  53 NtspySDLFVTVQVwagskPLTVPVQTAYKPFRLERKWNEWLELPITYkslPADARLAITIWDLSPTGGKTAIGH 127
                 134559********8776555566677766777888***********99**************998899889996 PP

>> TRAP_alpha  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   4.8   4.9e-05     0.055       5      77 ..     492     559 ..     488     582 .. 0.40

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.9e-05
  TRAP_alpha   5 llllvlpavllllssatkvvaaaaaeedevddelvdveaedeeveeeeeeeeeeeeeeeedeeelkaspdadt 77 
                 l ll l  +l   + +t+ +  a+ ++d+ d+  +d ++++e+++e+++++++++e+ee      ++++d   
  CCE27030.1 492 LYLLQLVQALKYEHIPTADADDADDADDTPDNTEQDQDQDQEQEQEQDQDQDQQQEQEE-----QESTQDSSS 559
                 33333333332223333333333333333333333333333333333333333333333.....333333333 PP

>> DUF2722  Protein of unknown function (DUF2722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   9.3   0.00021      0.24      14      73 ..     519     576 ..     513     582 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00021
     DUF2722  14 ssseqvskqqqkkesskqgsqqeqksqqqqqsqtetesssassepgkriedtgLlaLLGp 73 
                 +  ++++++q+++++++q+++q+q +qq+q++q+ t+ ss+   +   i+  + + LLG+
  CCE27030.1 519 DTPDNTEQDQDQDQEQEQEQDQDQDQQQEQEEQESTQDSSS--LARFLIQRAAANFLLGN 576
                 44556677777777777777777777888888888776665..45556666666666665 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.8   0.00026       0.3      97     185 ..     473     560 ..     468     660 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
       SLC12  97 eleeY.fnvihdafdlklavaiLrlkegldvsellqeeeeeeeekekkeaeesekeeeekkkakkkklleekskekeekekleekdsnls 185
                  +++Y +  + +a d +l + +L+l + l ++++ +++ +++++ ++++ +++e+++++++ ++++++ +++++++e++e+ +++ds++ 
  CCE27030.1 473 AVRSYaVDRLRKADDQELLLYLLQLVQALKYEHIPTADADDADD-ADDTPDNTEQDQDQDQ-EQEQEQDQDQDQQQEQEEQESTQDSSSL 560
                 56666456789999******************997777544443.3333333333222222.2222222333333333333333333333 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.1   0.00036       0.4     225     267 ..     512     555 ..     481     663 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00036
  Presenilin 225 aeekkaevaeseeeeeaekkkeeasesskee.eseeesseksaq 267
                 + +++a+ +++++e+++++++e+++e+++++ +++e+++++s+q
  CCE27030.1 512 DDADDADDTPDNTEQDQDQDQEQEQEQDQDQdQQQEQEEQESTQ 555
                 22221111111111111111111111111110111111111111 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0       0.1   1.1e+02      51      87 ..     241     276 ..     230     298 .. 0.46
   2 ?    8.5   6.0    0.0013       1.4      34      98 ..     490     554 ..     489     569 .. 0.48

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.1
      FAM176  51 lerlkkkkkklkeesekasededeeeeeeeedssese 87 
                 l+r+++ +++  +  ++ + ++d+ +ee+ e +s+++
  CCE27030.1 241 LQRQRALNRDDYQGRTD-NPHSDDGDEEDAERESRRN 276
                 33333322222222222.2222333333333333333 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0013
      FAM176  34 LlltLcllviriscrkdlerlkkkkkklkeesekasededeeeeeeeedsseseaeeelsefert 98 
                 Lll L+ lv ++ +++  + ++ + ++ +++ +++++d+d+++e+e+e+++++++++e +e e+t
  CCE27030.1 490 LLLYLLQLVQALKYEHIPTADADDADDADDTPDNTEQDQDQDQEQEQEQDQDQDQQQEQEEQEST 554
                 66777777777776665553333333333333333444444444444444444444444333333 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   6.6   0.00037      0.42     215     266 ..     509     554 ..     389     570 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00037
        RRN3 215 veledlddeedeeleeeleededdedddeddeesdlddlssdeeaeedeekd 266
                  + +d dd +d  +++e  + ++d+d+++++e +d+d+++++e++e+++  +
  CCE27030.1 509 ADADDADDADDTPDNTE--Q-DQDQDQEQEQE-QDQDQDQQQEQEEQES--T 554
                 45555555554433333..2.12222222221.1222222211111111..1 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.2   0.00082      0.92     277     329 ..     517     559 ..     468     579 .. 0.47
   2 ?   -3.4   0.0       3.3   3.7e+03      28      86 ..     633     710 ..     620     721 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00082
      DUF913 277 sssssetkeeekssededvemedaeeetesesdeseeseeekeknslldyiln 329
                 ++ + +++e   +++d+d       +e+e+e+d+++++++e+e+++ ++  + 
  CCE27030.1 517 ADDTPDNTE---QDQDQD-------QEQEQEQDQDQDQQQEQEEQESTQDSSS 559
                 111111111...122222.......1122222222222222222222222222 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.3
      DUF913  28 dalidrledevdealeevke.gkgtpaelrss.....vvdyeipf...................qrqqlLKslLkfikhlmqss 86 
                  a+++ +  e++++ e++++  ++++++l  +     v      f                    + +++Ks L+ ik +++++
  CCE27030.1 633 VAVVSKIASEIKASGESIAKkTEQLKKSLADPknellV------FdpplampldpsvkitgvvpDQVAVFKSSLNPIKCTFKTT 710
                 45666677777766666665344455444444333331......1222244556666666666677777777777777666655 PP

>> Roughex  Drosophila roughex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  15.1    0.0019       2.1     266     311 ..     511     559 ..     504     577 .. 0.63
   2 ?   -3.6   0.0         4   4.4e+03      42      73 ..     873     904 ..     870     907 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0019
     Roughex 266 kddasepdlpdqnkeedkd...eqeqqaeqeeqaqqqaeeapvssdist 311
                  dda + d   +n e+d+d   eqeq+ +q++++qq+ ee   + d+s+
  CCE27030.1 511 ADDADDADDTPDNTEQDQDqdqEQEQEQDQDQDQQQEQEEQESTQDSSS 559
                 4566555544444555554446677777777777777777655555543 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4
     Roughex  42 tGylrtqllgrfkherfdraaiveqsdelllk 73 
                 +G + ++l  rfk   f   a + +s +l+l 
  CCE27030.1 873 MGGVNSDLYNRFKQYCFLSYAALRKSSNLILN 904
                 8889999************999*****99995 PP

>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.2       2.1   2.3e+03     219     242 ..     256     270 ..     231     280 .. 0.36
   2 ?   15.3  15.8   8.7e-06    0.0097     185     256 ..     486     556 ..     458     570 .. 0.49

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.1
        CobT 219 eedeeeeeeeseeeeeegedddke 242
                  +++ +++ ++         +d+e
  CCE27030.1 256 TDNPHSDDGDE---------EDAE 270
                 11111111111.........1111 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 8.7e-06
        CobT 185 eDqkaFaravrqlLqdldla...eesaeepeeedeeeeedeeeeeeeseeeeeegedddkeeqeeaaseeeeeed 256
                 +Dq+     + ql q+l+++   +  a++ ++ d+  +++e+++++++e+   e+e+d++++q+++++e+e+++d
  CCE27030.1 486 DDQE-LLLYLLQLVQALKYEhipTADADDADDADDTPDNTEQDQDQDQEQ---EQEQDQDQDQQQEQEEQESTQD 556
                 4443.4445679999***88322333333333333333333333333332...2222222222222222222222 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.6    0.0023       2.6      13      66 ..     506     554 ..     487     569 .. 0.37

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0023
  RNA_pol_Rpc4  13 lPslkqkavsaaeddkseaesqsaekakaeeeskaekasgaeaeekkskkkssk 66 
                   +P+ +     a++ d+ ++++++ e+++++++++++++++++++++++++++s+
    CCE27030.1 506 IPTAD-----ADDADDADDTPDNTEQDQDQDQEQEQEQDQDQDQQQEQEEQEST 554
                   45533.....11222222222222222211111111111111111111111111 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4      0.76   8.6e+02     120     150 ..     249     272 ..     222     282 .. 0.42
   2 ?   10.7   8.0   0.00011      0.12     132     244 ..     509     664 ..     475     669 .. 0.46

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.76
       CDC45 120 reayealeeeeesdeedeeeeeeddddeeee 150
                 r++y+  +++++sd       + d++d e+e
  CCE27030.1 249 RDDYQGRTDNPHSD-------DGDEEDAERE 272
                 22222222222222.......1111111111 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00011
       CDC45 132 sdeedeeeeeeddddeeeeeeeeedeed.eeedeeeskkkrksksdeeeesddddersrkrrrse.................................. 195
                 +d   ++ ++ dd  +++e+++++d+e+ +e+d+++++++++++++++++s++ ++   +r   +                                  
  CCE27030.1 509 AD--ADDADDADDTPDNTEQDQDQDQEQeQEQDQDQDQQQEQEEQESTQDSSSLARFLIQRAAANfllgnyfhwylmvecddqspeqgidnrniyrkva 605
                 22..21122222222222222222222202222222222222222222223333334444444446666666666666666666666666666666666 PP

       CDC45 196 ..........psakklrrqlkkerrkyeavlekyysqgtsygesvsslmYsLaselgre 244
                           + +   +r+++ ++ ++ av++k  s+ +  ges++    +L ++l   
  CCE27030.1 606 ydfmlelvnqQPSGVEDRKTLLRQAEMVAVVSKIASEIKASGESIAKKTEQLKKSLADP 664
                 66666666542222333334444444455566666666666666665555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1882  (0.10497); expected 358.6 (0.02)
Passed bias filter:                      973  (0.0542696); expected 358.6 (0.02)
Passed Vit filter:                       208  (0.0116013); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.47
# Mc/sec: 6200.25
//
Query:       CCE27031.1  [L=200]
Description: uncharacterized protein CPUR_00503 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1468.15
//
Query:       CCE27032.1  [L=308]
Description: uncharacterized protein CPUR_00504 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.073   13.5   0.2        0.2   12.1   0.1    1.8  2  AFT       Transcription factor AFT


Domain annotation for each model (and alignments):
>> AFT  Transcription factor AFT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.1e-05       0.2      63     108 ..     101     149 ..      67     152 .. 0.72
   2 ?   -1.7   0.0      0.21   3.8e+03      33      69 ..     199     237 ..     176     246 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.1e-05
                 .........XXXXXXXXXX----EEEEEEE.TTTTEEEEEEE..E---S CS
         AFT  63 eeetsskkkkkkravsrynsCPfrvratys.lkrkkWsivvv..nnehs 108
                 +++  s+++  +r +++   CPfr+ra+     + +W   v+   ++h+
  CCE27032.1 101 GQRRPSQSSGLRRRTTKLIDCPFRLRASCRkAMNDNWVYAVIpgHEHHN 149
                 445566777788899999*********8752567889988883334455 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.21
                 EEEE---XXXXXXXX........................ CS
         AFT  33 vfkCkaakkkrkase..kskeeekaedestvseeetssk 69 
                 ++  + + ++r+  +  ks++e++++ +s+++ ++++ +
  CCE27032.1 199 LLTARDVSNERQRLRgsKSASESREGLDSSAGASQAQAE 237
                 444444444444333002333333333344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2214.27
//
Query:       CCE27033.1  [L=572]
Description: related to GDP/GTP exchange factor for Gsp1p/Gsp2p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-45  152.4  14.8    3.7e-08   33.9   0.0    7.6  7  RCC1      Regulator of chromosome condensation (RCC1) repeat
    1.6e-36  123.4  32.8    1.6e-09   37.3   0.9    6.6  7  RCC1_2    Regulator of chromosome condensation (RCC1) repeat
  ------ inclusion threshold ------
      0.044   13.6   0.6      0.097   12.4   0.1    1.8  2  DUF4483   Domain of unknown function (DUF4483)
       0.12   12.1   0.1        1.2    8.8   0.0    2.7  4  Hira      TUP1-like enhancer of split


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.5e-08   6.6e-05       4      50 .]     141     196 ..     140     196 .. 0.84
   2 !   29.6   0.0   1.8e-10     8e-07       1      50 []     199     268 ..     199     268 .. 0.84
   3 !   14.5   0.1   8.9e-06      0.04       2      50 .]     272     338 ..     271     338 .. 0.69
   4 !   33.9   0.0   8.2e-12   3.7e-08       1      50 []     341     393 ..     341     393 .. 0.88
   5 !   33.0   0.5   1.5e-11   6.9e-08       2      49 ..     397     447 ..     396     448 .. 0.90
   6 !    9.8   0.0   0.00026       1.2       1      50 []     451     514 ..     451     514 .. 0.74
   7 !   11.8   0.5   6.4e-05      0.29       2      48 ..     518     566 ..     517     568 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.5e-08
                 EEEEE--GGGTTSSSS-...--E.....EEEEE-GGGTTS..-EEEEEEETTEEEEE CS
        RCC1   4 VysWGrndyGqLGlgtt...esv.....lvPtkveglsgn..rvvkvacGddhtval 50 
                 V  +G++++G LGlg+      +     ++P+   +l+++   vv+va G +h+val
  CCE27033.1 141 VIVFGSGENGELGLGSIrydR-KnpvvaDKPRVNHLLRADevGVVQVAVGVRHCVAL 196
                 5679**********9999853.334566669999999888***************97 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 1.8e-10
                 TTEEEEEE--GGGTTSSSS-....--E..............EEEEE-GGGTTS..-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgtt....esv..............lvPtkveglsgn..rvvkvacGddhtval 50 
                 dG V++WG nd   LG+ tt    +s+              ++P  vegls    ++++va+ d+ t+al
  CCE27033.1 199 DGGVLTWGLNDSRALGRNTTssweHSKdidykhatdlnpleSIPLPVEGLSHLglKMTQVAATDNATFAL 268
                 8****************99988653336666666666666666*******988***************97 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 8.9e-06
                 TEEEEEE..--GGGTTSS......SS-.--EEE.............EEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   2 GrVysWG..rndyGqLGl......gtt.esvlv.............PtkveglsgnrvvkvacGddhtval 50 
                 G Vy+WG   +++G  G       + t +++ +             P+++egl+  ++++ ++G +h++al
  CCE27033.1 272 GFVYGWGtfHDSDGVYGFlrhkmqK-ThKTH-KtktpdydarfqasPVRIEGLR--NIKHLSAGMNHVLAL 338
                 8899999996666666765556642.22222.12334445555666*******9..*************97 PP

  == domain 4  score: 33.9 bits;  conditional E-value: 8.2e-12
                 TTEEEEEE--GGGTTSS....SS---EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGl....gttesvlvPtkveglsgnrvvkvacGddhtval 50 
                 +G+Vy+WG++++ qL +     +++++l+P+ v +++ + +v++++G +h++al
  CCE27033.1 341 SGDVYAWGSGQQAQLARrlvqRHQHESLTPRMVDLPK-KGIVSIFAGFNHSFAL 393
                 59***************777444466699****9999.5*************97 PP

  == domain 5  score: 33.0 bits;  conditional E-value: 1.5e-11
                 TEEEEEE--GGGTTSSSS---EEE...EEE-GGGTTS-EEEEEEETTEEEE CS
        RCC1   2 GrVysWGrndyGqLGlgttesvlv...PtkveglsgnrvvkvacGddhtva 49 
                 G+V++WG n++Gq G++ ++++l+   Pt+v+gl+g  + ++a G +h++a
  CCE27033.1 397 GHVWTWGLNNFGQTGIPANDENLHighPTLVPGLEGYSIRHMAPGFHHSLA 447
                 9******************77744466**********************98 PP

  == domain 6  score: 9.8 bits;  conditional E-value: 0.00026
                 TTEEEEEE--GGGTTSSSS-....--E...........EEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgtt....esv...........lvPtkveglsgnrvvkvacGddhtval 50 
                 dG+V++WGr d  q G  +     e++           l Pt+++g  +   + va+G d ++a+
  CCE27033.1 451 DGQVLAWGRCDASQSGMDPValsnEKClfdsrgrprilLNPTLIPGVAA-GTSFVAAGMDNSLAI 514
                 9****************88877554445555555555444999999874.555588888888886 PP

  == domain 7  score: 11.8 bits;  conditional E-value: 6.4e-05
                 TEEEEEE--GGGTTSSSS---EEEEEE-..GGGTTS-EEEEEEETTEEE CS
        RCC1   2 GrVysWGrndyGqLGlgttesvlvPtkv..eglsgnrvvkvacGddhtv 48 
                 G V +WG +++ + Glg++++   Pt++  +g  ++ ++ + cG+ +t+
  CCE27033.1 518 GTVSCWGYSENFRTGLGSQNTAEMPTELvgKGVVNRGFTYAGCGGEFTI 566
                 67779**************9999*****77777777***********97 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.8   8.1e+03      20      29 ..     141     150 ..     140     151 .. 0.79
   2 !   28.9   1.4   1.5e-10   6.8e-07       1      27 [.     183     209 ..     183     211 .. 0.95
   3 !   14.9   0.2   3.8e-06     0.017       3      29 ..     257     285 ..     255     285 .. 0.89
   4 !   27.9   0.2   3.2e-10   1.4e-06       1      26 [.     325     350 ..     325     354 .. 0.92
   5 !   37.3   0.9   3.6e-13   1.6e-09       1      30 []     380     409 ..     380     409 .. 0.98
   6 !   18.5   0.2   2.8e-07    0.0013       7      25 ..     441     459 ..     435     463 .. 0.91
   7 !   16.3   0.5   1.4e-06    0.0063       4      26 ..     504     526 ..     497     529 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.8
      RCC1_2  20 VlcWGsNsdG 29 
                 V  +Gs ++G
  CCE27033.1 141 VIVFGSGENG 150
                 7889998888 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 1.5e-10
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNs 27 
                 V++v+ G++H +aLt dG Vl+WG N+
  CCE27033.1 183 VVQVAVGVRHCVALTHDGGVLTWGLND 209
                 89**********************996 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 3.8e-06
      RCC1_2   3 svsaGdyHscaLtedGeVlcWG..sNsdG 29 
                 +v+a d+ ++aLt++G V++WG  ++sdG
  CCE27033.1 257 QVAATDNATFALTDSGFVYGWGtfHDSDG 285
                 89********************5558887 PP

  == domain 4  score: 27.9 bits;  conditional E-value: 3.2e-10
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsN 26 
                 +k++saG +H +aLt++G+V++WGs 
  CCE27033.1 325 IKHLSAGMNHVLALTTSGDVYAWGSG 350
                 789*********************96 PP

  == domain 5  score: 37.3 bits;  conditional E-value: 3.6e-13
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 ++s+ aG +Hs+aL++ G+V++WG N++GQ
  CCE27033.1 380 IVSIFAGFNHSFALDRHGHVWTWGLNNFGQ 409
                 79***************************9 PP

  == domain 6  score: 18.5 bits;  conditional E-value: 2.8e-07
      RCC1_2   7 GdyHscaLtedGeVlcWGs 25 
                 G  Hs+a tedG Vl+WG+
  CCE27033.1 441 GFHHSLACTEDGQVLAWGR 459
                 788***************6 PP

  == domain 7  score: 16.3 bits;  conditional E-value: 1.4e-06
      RCC1_2   4 vsaGdyHscaLtedGeVlcWGsN 26 
                 v+aG + s+a++e G+V cWG  
  CCE27033.1 504 VAAGMDNSLAIDEHGTVSCWGYS 526
                 8999999**************75 PP

>> DUF4483  Domain of unknown function (DUF4483)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.2e-05     0.097      13      69 ..     256     309 ..     253     315 .. 0.85
   2 ?   -3.3   0.0       1.5   6.6e+03       7      30 ..     357     380 ..     354     381 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.2e-05
     DUF4483  13 selGkakrrtydlPgedfvYGkaiekkdegvkevmstwkshkesspskekkperDFi 69 
                 +++ ++ ++t+ l +++fvYG  + ++++gv   + + +++   +++++k+++ D+ 
  CCE27033.1 256 TQVAATDNATFALTDSGFVYGWGTFHDSDGVYGFLRHKMQK---THKTHKTKTPDYD 309
                 57889999***************************999998...5556667777774 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.5
     DUF4483   7 npLLvkselGkakrrtydlPgedf 30 
                 ++L+++++  +  +r++dlP++++
  CCE27033.1 357 RRLVQRHQHESLTPRMVDLPKKGI 380
                 789999999999999999999876 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         1   4.5e+03      23      44 ..     192     213 ..     186     232 .. 0.79
   2 ?   -2.3   0.0      0.69   3.1e+03      16      38 ..     257     279 ..     250     306 .. 0.70
   3 ?    8.8   0.0   0.00027       1.2      14     101 ..     325     400 ..     322     406 .. 0.78
   4 ?   -2.7   0.0       0.9     4e+03      14      36 ..     501     523 ..     489     527 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1
        Hira  23 yLlavtsvgllyvWnvkkkkvl 44 
                 + +a+t +g +  W ++  ++l
  CCE27033.1 192 HCVALTHDGGVLTWGLNDSRAL 213
                 5679999999999999776665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.69
        Hira  16 fLessgsyLlavtsvgllyvWnv 38 
                  +++ ++  +a+t +g +y W +
  CCE27033.1 257 QVAATDNATFALTDSGFVYGWGT 279
                 56667778889999999999976 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00027
        Hira  14 asfLessgsyLlavtsvgllyvWnvkkkkvllppvslapllssssrssekeltrapavtsasltsnGvpivtlsngdgylydkslktW 101
                 + +L++  +++la+t++g +y W   +++ l      + l+++ +       +++ +  ++ l ++G++ +    +++++ d+  ++W
  CCE27033.1 325 IKHLSAGMNHVLALTTSGDVYAWGSGQQAQLA-----RRLVQRHQ-------HESLTPRMVDLPKKGIVSIFAGFNHSFALDRHGHVW 400
                 67899999***************996665555.....66666532.......377888888888888888888888888888877777 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 0.9
        Hira  14 asfLessgsyLlavtsvgllyvW 36 
                  sf+++  +  la+ + g++++W
  CCE27033.1 501 TSFVAAGMDNSLAIDEHGTVSCW 523
                 578888888889*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4058.76
//
Query:       CCE27034.1  [L=379]
Description: uncharacterized protein CPUR_00506 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-58  197.2   0.0    1.9e-58  196.9   0.0    1.1  1  PI31_Prot_N  PI31 proteasome regulator N-terminal
    1.2e-17   64.8  16.2    1.2e-17   64.8  16.2    2.9  3  PI31_Prot_C  PI31 proteasome regulator


Domain annotation for each model (and alignments):
>> PI31_Prot_N  PI31 proteasome regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9   0.0   2.1e-62   1.9e-58       2     161 ..      27     184 ..      26     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 196.9 bits;  conditional E-value: 2.1e-62
  PI31_Prot_N   2 ssdLsssydalallvHacmtalgFrlvglgedkkieesesksecqslaprLpaeWnassdsysFrYaheqssmefvlkvdrlgnklvirglalgddki 99 
                  +sdL+s+y+++allvHa++++l+Frl+g+++dk +      +ec++laprLp++Wn++++s+sF+Y+h+qssm+f+++vdr+g+k+++r+la+gd++i
   CCE27034.1  27 TSDLASTYELIALLVHAYLASLSFRLCGFTQDKPS------PECENLAPRLPTGWNSGFGSLSFVYKHKQSSMQFITRVDRMGSKVEVRALAVGDENI 118
                  89******************************998......69******************************************************* PP

  PI31_Prot_N 100 asfelavrdyvsssalPvrit...g.edrsdlaeklkdvfiseerladLisllkvsivqklvpgls 161
                  ++fe +vrd+v+ssalP+rit   g edrsdlaekl+++f+s+e++++++++lkv+i+qkl+p l+
   CCE27034.1 119 HRFERSVRDVVQSSALPIRITmvdGqEDRSDLAEKLSKAFVSDEAITSILKDLKVNIIQKLIPRLQ 184
                  ***********************967*************************************998 PP

>> PI31_Prot_C  PI31 proteasome regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   2.4         2   1.8e+04      39      45 ..     245     251 ..     204     272 .. 0.52
   2 !   64.8  16.2   1.4e-21   1.2e-17       1      78 []     275     343 ..     275     343 .. 0.85
   3 ?   -4.8   5.1         2   1.8e+04      43      59 ..     347     359 ..     344     377 .. 0.44

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2
  PI31_Prot_C  39 gpdhPlf 45 
                  ++  P+f
   CCE27034.1 245 DFPPPGF 251
                  2223333 PP

  == domain 2  score: 64.8 bits;  conditional E-value: 1.4e-21
  PI31_Prot_C   1 iGdsDLyPpglgphdPLr...gpgglpspgggdggggGmhvgpdhPlfkrsengpggrggpdgfelppavpPGARfDPvgp 78 
                  iG++DL+PpglgphdPLr    +gglp+pg    g +Gm++++d+Plf     g+g++g+    +++p++pPGAR+DP+gp
   CCE27034.1 275 IGHDDLNPPGLGPHDPLRgsfVGGGLPRPG----GPSGMYPTFDDPLF----MGQGSQGE----GYDPQAPPGARWDPLGP 343
                  8*****************776556666555....567***********....77766665....499*************9 PP

  == domain 3  score: -4.8 bits;  conditional E-value: 2
  PI31_Prot_C  43 Plfkrsengpggrggpd 59 
                  P f     gpggrgg+ 
   CCE27034.1 347 PRF----PGPGGRGGGG 359
                  444....2333332221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2622.62
//
Query:       CCE27035.1  [L=1030]
Description: related to importin9 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-10   38.9   0.2    5.5e-09   35.8   0.1    2.7  2  IBN_N          Importin-beta N-terminal domain
  ------ inclusion threshold ------
       0.01   14.4   0.0      0.018   13.6   0.0    1.3  1  CAS_CSE1       CAS/CSE protein, C-terminus
      0.027   15.0   0.6        0.1   13.2   0.6    1.9  1  Ribosomal_60s  60s Acidic ribosomal protein
      0.043   13.9   0.0       0.44   10.6   0.0    2.7  2  Xpo1           Exportin 1-like protein


Domain annotation for each model (and alignments):
>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   1.2e-12   5.5e-09       1      71 [.      23      97 ..      23     100 .. 0.90
   2 ?   -1.4   0.0      0.51   2.3e+03      12      40 ..     171     199 ..     165     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.2e-12
                HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGG..SCCCHC......GSXHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWs..deeekq......slpseekeqIrnnllnl 71
                Ae  Lk++ ++p + +al  i+++++ + ++Rq+A++ L+++i+++W   d    q      ++++++++ ++++ll+l
  CCE27035.1 23 AEIELKRARTSPAYPVALAKIASHTSVSTNIRQAALSSLRQFIEHNWAvgD----QddepiiPISDDTRAILKQSLLDL 97
                6778********************************************443....234669***************987 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.51
                 TCHHHHHHHHHHCTTSHHHHHHHHHHHHH CS
       IBN_N  12 pgflsallqilanseselevRqlAalyLk 40 
                  + + al +++ n++ ++ +R lA+++++
  CCE27035.1 171 RDIAIALAEVALNESRKPVLRALAISVFR 199
                 566788999999988888******99986 PP

>> CAS_CSE1  CAS/CSE protein, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     4e-06     0.018     144     332 ..     673     868 ..     663     881 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4e-06
    CAS_CSE1 144 llaaLleanksetlpesykaliellLsPalWer.kgNv.paLvrLlsaiikkasqei......vaenklepvLgiFqkLiaskandeegFd...lLesv 231
                 lla+L+e    e lp+ ++a + + L+  l e+ +g +  +    ++ i+++  q++      +    le  L i ++L+    +d+ + +   l  ++
  CCE27035.1 673 LLAVLVENGS-EPLPDGFVAAVLPKLTRLLMESnEGEIlRPGSEAVKWILSHDHQQVfnwqdgNGASGLEVCLRIVDRLLGPALEDNSASEvggLTAEL 770
                 5666666443.666666666555555555554314555335555666666666666533211122345788899999999998888888772225779* PP

    CAS_CSE1 232 ieslpaevlekylktilsllltrlqnsktekfkkrlvvflslvsakddkglgadaliqlidkvQan..vftpllekvilpelqklarpldrKlavvslt 328
                 +e+  +e l ++l ++l+ + +rl + ++  f+++l+  +  +s +     ga+ +i+ + ++Q n     +++++ +l + + +a+  + +  v++l+
  CCE27035.1 771 VEKAGQERLGPFLPKLLQAVANRLASAQAAAFIQSLILVFARLSLH-----GAHDVIEFLSQIQINgdSGLQVVLSKWLENSASFAGYDEIRQNVIALS 864
                 ***********************************99877776665.....699999999999976224568889999999999999999999999999 PP

    CAS_CSE1 329 klla 332
                 kl a
  CCE27035.1 865 KLYA 868
                 9864 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6   2.3e-05       0.1      48      81 ..     923     958 ..     893     964 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.3e-05
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXX...XX--S CS
  Ribosomal_60s  48 aaaaaaaaaaaaaaaaaaaeekkkeeeee..Eeedd 81 
                    a+a+ + a+a  aaa aaa+e ++e ee+  E++dd
     CCE27035.1 923 ASASGGGASASTAAAMAAAAEFDAELEEDgwEDDDD 958
                    333333333334444444444444444444454554 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.9e-05      0.44       8      57 ..     111     161 ..     104     237 .. 0.87
   2 ?   -0.8   0.0      0.33   1.5e+03      92     137 ..     522     563 ..     511     574 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.9e-05
                 HHHHHHHHHHHHTTTTSTTHHHHHHHHHCT..HHHHHHHHHHHHHHHHHHH CS
        Xpo1   8 laealaelflqeypnnWpsffddllsllss.spsglelllriLkvlpeEia 57 
                  + a+ ++++ ++p++Wp++++++ls +    +++l   lr+L  l eE  
  CCE27035.1 111 ASYAVGKIAIYDFPEQWPNLLPTILSIVPVgTDAQLHGALRLLGDLVEESL 161
                 5667889**********************955999999*****99999976 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.33
                 HHHHHCCHHHHHHHHHHHHHHHHTTTS-HHHHHTSCHHHHHHHHCC CS
        Xpo1  92 eqsqskkqsselveavLkclsswvswidiglivnnpllnllfqlLs 137
                  + +    s+ +  a++k+++  +    +g + + p+++++  +++
  CCE27035.1 522 TNEE----SEVVQVACIKAIEGMITSGHVGSVRQIPIITAIQAYMN 563
                 3333....4788999*******************99**99999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1030 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 6726.14
//
Query:       CCE27036.1  [L=558]
Description: probable uracil permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     2e-152  508.0  38.5   2.4e-152  507.8  38.5    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  507.8  38.5  1.3e-156  2.4e-152       1     440 []      36     488 ..      36     488 .. 0.98

  Alignments for each domain:
  == domain 1  score: 507.8 bits;  conditional E-value: 1.3e-156
  Transp_cyt_pur   1 pvpeeeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvv 95 
                     pv+ ++R+w+++n++ +W++++ nintw+i+++++  gL+wwq+++++++g+ i+a+fv+++g++Ga y++ fp+  RasfGi+gsl+p+++r+ 
      CCE27036.1  36 PVESQRRQWGAWNFVGFWIADSYNINTWMISSSMIIAGLSWWQAWICVWIGYSIAAFFVVMNGRVGAVYHIGFPVANRASFGIWGSLWPVFNRAA 130
                     89********************************************************************************************* PP

  Transp_cyt_pur  96 iaivwfgvqawiGsealllmlgkifgk..wleigg..ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkae 186
                     +a+vw+gvqa+iG+++++lm+++i+ +    +++g      +s+ ++v+ffifw+ sl++++++v+kir++f+++a++vp+a ++fliwalv+a+
      CCE27036.1 131 MACVWYGVQAYIGGNCVYLMIRSIWKSwdRKTMPGpfDPNVSSTPDFVSFFIFWLFSLPAIWFPVHKIRHLFTVKAYFVPPAGIAFLIWALVRAG 225
                     *************************996666788898888899**************************************************** PP

  Transp_cyt_pur 187 g.Gpvldkavklgkse...lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilak 277
                     g Gp++ k+ +++ s+    +++++++ +a+fatli+n  DFtr+a+++k ++++q++a+p++f+ +++igi v++ ++++y++++w+pld+l++
      CCE27036.1 226 GaGPIIRKSNSVHGSDlawQMVKGIMASIANFATLIINDCDFTRFARKPKDAIWSQALAIPFGFAFTSIIGIFVSSSSSVIYNEPIWNPLDVLGH 320
                     *************9999999*************************************************************************** PP

  Transp_cyt_pur 278 fdet......agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklftaflsllavflspvagvi 366
                     f +       +gv++i++ +a+aqlg+nisan++sag+d++al+P++ini+rg +i+a+i+l+++p +ll s+++ ft++ls+++vfls++agv+
      CCE27036.1 321 FIDDggsaqrFGVFVIALAFAVAQLGTNISANSVSAGTDMTALFPRYINIRRGGYICAAIGLAMCPYNLLTSANN-FTTYLSAYSVFLSSIAGVM 414
                     *9999**********************************************************************.******************* PP

  Transp_cyt_pur 367 iadyfvvrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsylvG 440
                       dy+vvr+gyl+++ ly++r++++Y+y++g+Nwra  ay++Gi++++vg+ag++g  v+kga+ l++l+++ G
      CCE27036.1 415 STDYYVVRKGYLNVKGLYDARKTGPYYYTFGINWRAYTAYVAGILINVVGFAGAIGKDVPKGATYLYNLNFFCG 488
                     **********************************************************************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 4066.58
//
Query:       CCE27037.1  [L=611]
Description: related to fungal transcriptional regulatory protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-30  105.3   0.1    3.9e-30  104.9   0.1    1.1  1  Fungal_trans_2  Fungal specific transcription factor domain
    0.00027   21.0  12.9    0.00055   20.0  12.9    1.5  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.1   4.4e-34   3.9e-30       1     372 [.     207     599 ..     207     610 .. 0.82

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 4.4e-34
  Fungal_trans_2   1 elldyyldnvapllspvpes.snpfrkvllplalsnkallhallalsafhlqskgpkds..................lereakrykslalkelqe 76 
                     ++l ++ d+v++ l   + + snpfr+ l+pl +++++ll+ l+a sa+h+++k+ + +                     ++++ +  al+  q+
      CCE27037.1 207 YYLAHFADSVCKDLVARDTPySNPFRE-LIPLTQRHPFLLQILIATSAIHWSNKFRPRGaippglpdpggylaqlrsQHLSSRQALIDALTAKQK 300
                     6899************9999*****98.67*********************77777777777777777777654443334444444458888888 PP

  Fungal_trans_2  77 alaelsstls..rnekykdiLaaiLllcsieissgdvsd...wrvhLeaatsliksrggskasssslsskarfllrifayldilssttlgrgpsf 166
                     al  l++ l+  +++ ++ +Laa+ +l+ ++ ++ d+ +   w+vh++++  +++++ + ++s+ s +   ++ l+ +    il+st     + +
      CCE27037.1 301 ALGYLRHVLDalDPAGSEVVLAAMHFLVKFDLIDLDRNNdkaWQVHMKGTSIILAHLVPDSISHGSSRVLRDCVLADCFIYHILGSTLAT--GAM 393
                     88888888888888888**************99999666677******************777777777777777766666677777666..677 PP

  Fungal_trans_2 167 pseeyekllenkkeesdsgldplmGcsnslilliseisrLarekrsarkdseleplsileeaseleqrllswkprssdlepdldeterassls.. 259
                     +s+  +  +e  + +   ++++++ c+++l++ i + s L+ e   ++ +   +  s +++a +l+ ++l  + ++s + ++l+e+ + s+++  
      CCE27037.1 394 ASRIARYAFELLPVIKRVEVNSYLSCPPELLQTILHASLLSYETPCTDGS---HSASVADQALKLIDEAL--AFDISGWADRLREMPDVSDIDsr 483
                     77777777777777*****************************9988888...56666666666666665..77788888888888888888864 PP

  Fungal_trans_2 260 kdltelfrlaaliylyrlvlglppssp.evqelvkkllellellpsspvaiasLlWplFiaGceavdeddRdfvrrrleele.qsrlgnvrrarq 352
                      +++++ r a ++y++++++ + +  p  ++ lv +++ +l ++++ +   +   WplFiaG+e  + d+R +  +r+ ++  +   g + +a +
      CCE27037.1 484 IHIASAHRSAVCLYILQALPVVRAVRPiDTMVLVGDIFGHLGQIDDRDPYFKATSWPLFIAGAETREADHRAWAMSRMFAIWeICPWGYIFKATK 578
                     456999************988888855269***************7777699999**********************9999956666******** PP

  Fungal_trans_2 353 vleevWrrrd.dgeekidWrd 372
                     +l+  W+++d   +++++W +
      CCE27037.1 579 MLRATWQMQDsGAGSGVSWLT 599
                     **********44445888965 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0  12.9   6.2e-08   0.00055       2      31 ..       9      38 ..       8      42 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.2e-08
                S-HHHHHCT---STSSSS-HHHHHCTHHHC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCt 31
                +C nCr+++ +Cd+  P+C +C+ +  eC 
  CCE27037.1  9 PCHNCRRRRLRCDRSWPTCHKCAASKQECL 38
                7****************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4474.61
//
Query:       CCE27038.1  [L=121]
Description: uncharacterized protein CPUR_00511 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.042   14.3   0.0      0.064   13.7   0.0    1.3  1  hSH3      Helically-extended SH3 domain


Domain annotation for each model (and alignments):
>> hSH3  Helically-extended SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.6e-06     0.064       6      47 ..      42      83 ..      36      88 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.6e-06
        hSH3  6 kyegeikvlysvtvdpnlaskklggkdLpvkrgeildviqkt 47
                +y ge+ v  +v+v+ ++ +  +g+ dL++ +ge++ v+   
  CCE27038.1 42 QYMGEVAVALEVEVAAACYMNGMGEPDLDMMKGEQVAVVVVV 83
                699**********************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 920.83
//
Query:       CCE27039.1  [L=586]
Description: uncharacterized protein CPUR_00510 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1116  (0.0622455); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 3867.27
//
Query:       CCE27040.1  [L=318]
Description: probable ser/thr protein phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-35  121.2   0.2      1e-34  120.8   0.2    1.2  1  Metallophos    Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.069   13.6   0.4       0.19   12.2   0.4    1.7  1  STPPase_N      Serine-threonine protein phosphatase N-termina
       0.17   12.1   0.0       0.24   11.6   0.0    1.3  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.2   1.7e-38     1e-34       2     201 ..      51     243 ..      50     246 .. 0.89

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 1.7e-38
                  EEEEEESBTBTTCCTHHHHHHHHHHHH.HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl.lreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygylg 89 
                  +++v+gD+H     gq+ dl+++++    ++  ++l+l  GD+vdrg ++ e++ l ++ +++yp++v l++GNHe        gf+ e+++kyg+  
   CCE27040.1  51 PVTVVGDIH-----GQFFDLIEIFRIGgYCPDTNYLFL--GDYVDRGMFSVETISLlVCLKLRYPNRVQLIRGNHEsrgvtqsyGFYTECSRKYGN-- 139
                  799******.....**********7777555599****..*******6666666665**************************************9.. PP

                  HHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHH CS
  Metallophos  90 ifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgdea 183
                    +++w ++++ f++l l++ +s+  +++++hGg sp   +s+d+++ +++++e+p++g   d+ ++d   +++++  + l+  p  rg+gy+fg ++
   CCE27040.1 140 --ANVWHYFTDMFDFLTLSVVISN--EIFCVHGGlSPSV-HSIDQIKIIDRFREIPHEGpmaDLVWSD---PDPDRDEFSLS--P--RGAGYTFGAQV 225
                  ..889*******************..********87777.****************************...33333333333..3..5799******* PP

                  HHHHHHHTTESEEEEESS CS
  Metallophos 184 ledllkkygvdlvisGHt 201
                  ++++l  ++  +++++H+
   CCE27040.1 226 VRKFLAVNNMSHILRAHQ 243
                  *****************7 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   3.2e-05      0.19       1      42 [.      10      43 ..      10      46 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.2e-05
   STPPase_N  1 vDdiIerLlevrgkpggkkvqLseaEIrqlCakareiFLsQP 42
                +D++I+rL +       k++ L e+ I+++Cak +e+++++ 
  CCE27040.1 10 LDECISRLYK-------KEL-LAESLIEAICAKTKELLMRES 43
                6888888887.......344.9*****************986 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     4e-05      0.24       4      85 ..      53     131 ..      51     180 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4e-05
  Metallophos_2   4 aiiSDlHsnldaleavlealkevgvdaiihaGDl.eeeepevleellela........pvlaVrGNnD.....eevveedvlreaaelgtdlpeea 85 
                     ++ D+H++++ l +++++   +     +++GD+   +   ++e++  l         +v  +rGN++     +                ++  + 
     CCE27040.1  53 TVVGDIHGQFFDLIEIFRIGGYCPDTNYLFLGDYvD-RGMFSVETISLLVclklrypnRVQLIRGNHEsrgvtQ----------------SYGFYT 131
                    689****************999955568899**842.333244443333344455899**********444441................222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2347.24
//
Query:       CCE27041.1  [L=197]
Description: probable rho GDP dissociation inhibitor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-66  222.9   0.1    3.3e-66  222.8   0.1    1.0  1  Rho_GDI         RHO protein GDP dissociation inhibitor
  ------ inclusion threshold ------
      0.037   14.5   0.0       0.11   12.9   0.0    1.8  1  E1_DerP2_DerF2  ML domain


Domain annotation for each model (and alignments):
>> Rho_GDI  RHO protein GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.8   0.1   3.6e-70   3.3e-66      13     195 .]      11     196 ..       1     196 [. 0.92

  Alignments for each domain:
  == domain 1  score: 222.8 bits;  conditional E-value: 3.6e-70
     Rho_GDI  13 eekklklg.pqkslkeqleldkdDesLrryKeqL.Lgsakvdleavetnepevkilkltilsserpdevleldlted..leklkkkaftlkegseyklk 107
                 e + +kl+ p++sl e++++d+ DesL+ryK++L Lg+ k d  ++++n+p+v+i++ +++ s  + +++++dl+ +  +++lk+k+f++kegs+++++
  CCE27041.1  11 EPTGYKLSqPKQSLAEYQQMDAGDESLQRYKQSLgLGNGK-D--ISDPNDPRVCIIQALTMDSAGR-DPVTIDLSAPgsENSLKDKPFKIKEGSRFTMS 105
                 346677653789**************************76.4..67**************999999.999***9988778999**************** PP

     Rho_GDI 108 isFkvsneivsGlkYvqtvwktgvkvdkskemlGsysPqqee...yeyeleeeeaPsGllarGsYsakskfvDDDkkvyleleysfeikkd 195
                 ++Fkv++ei+sGl+Yvq+v+++g++v k +em+Gsy+P ++e   y ++++eeeaPsG+larG+Ysa s+fvDDD k++l +e+sf+i+kd
  CCE27041.1 106 AQFKVQHEILSGLHYVQVVKRKGIRVSKDTEMIGSYAPSTDEqpfYVKKFQEEEAPSGMLARGHYSAVSSFVDDDGKQHLGFEWSFDIAKD 196
                 ****************************************88899********************************************97 PP

>> E1_DerP2_DerF2  ML domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.3e-05      0.11      23      67 ..      88     134 ..      69     193 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
                     E...SSECEECTSEEEEEEEEEECSSBBSSEEE.EEEEEETTEEEEE-B CS
  E1_DerP2_DerF2  23 s...ppcplkrgqnltisadgstsdeissglka.evevkvggwikvpfe 67 
                     s   +p ++k+g++ t+sa++++++ei sgl   +v ++  g i+v  +
      CCE27041.1  88 SlkdKPFKIKEGSRFTMSAQFKVQHEILSGLHYvQVVKRK-G-IRVSKD 134
                     0555688************************983444444.5.777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1520.26
//
Query:       CCE27042.1  [L=437]
Description: uncharacterized protein CPUR_00514 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.027   14.3   0.6       0.21   11.5   0.0    2.5  3  KilA-N    KilA-N domain


Domain annotation for each model (and alignments):
>> KilA-N  KilA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.1e-05      0.21       6      43 ..      80     122 ..      76     131 .. 0.80
   2 ?    1.3   0.0     0.017   3.1e+02      69      92 ..     120     144 ..     103     149 .. 0.67
   3 ?   -2.8   0.9       0.3   5.4e+03      76      76 ..     349     349 ..     315     411 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.1e-05
      KilA-N   6 qeiiirrvkdgyinatkllkaa.....aedtkriddWlrnkst 43 
                 +++++rr+ dgy++at ++ka      a+++   ++++++  t
  CCE27042.1  80 SYFLMRRSFDGYVSATGMFKATfpyaeASEEEAERKYIKSLAT 122
                 678999977************9888776666667788777666 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.017
      KilA-N  69 nrkakpgrlqG.tYvhpdlalavas 92 
                   +  p++++G ++++p+ ala+a+
  CCE27042.1 120 LATTSPEETAGnVWIPPEQALALAE 144
                 4455566666659*********994 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.3
      KilA-N  76 r 76 
                 +
  CCE27042.1 349 K 349
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1473  (0.0821574); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 2856.18
//
Query:       CCE27043.1  [L=323]
Description: related to 3-hydroxyisobutyrate dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-28   99.8   0.0    2.5e-28   98.8   0.0    1.6  1  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
    2.8e-26   92.6   0.0    8.2e-26   91.1   0.0    1.7  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
  ------ inclusion threshold ------
       0.17   11.5   6.9       0.26   10.9   6.9    1.3  1  SR-25           Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   4.2e-32   2.5e-28       1     122 []     181     309 ..     181     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 4.2e-32
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenk......lpqrvlsrdfdpgFaldlmlKDlglalelareag 89 
                     GaG a+Kl+nn+lla++ +a++Ea+ l+ + Gldp+++ +vin s+gr++ +e +      + ++++srd++ gFal+lm KDl+la+ +areag
      CCE27043.1 181 GAGLAAKLANNYLLALSNIATAEAMNLGMRWGLDPRTLARVINLSTGRCWPSEVNnpvpgvVSAAPASRDYEGGFALSLMSKDLRLAVMAAREAG 275
                     9*************************************************97555555555889999**************************** PP

  NAD_binding_11  90 aplpllalaeqlyaaaaaegg.gdaDhsaivrll 122
                     a +pl+  a  +y+aa +  + +++D+s ++r+l
      CCE27043.1 276 AVMPLAGPALGVYEAAGRLEEcKGRDFSVVYRYL 309
                     *************99987555378****999986 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0   1.4e-29   8.2e-26      14     158 .]       1     178 [.       1     178 [. 0.91

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 1.4e-29
                    HHHHH...HHTT-EEEEE-SSHHHHHHHHHTT..........EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC-................ CS
  NAD_binding_2  14 malnl...lkagykvavynrtkekveelvaeg..........akaaesieelvasldvvitmvkagkavdevieglleal................ 80 
                    ma+nl   l+   ++++++ ++  +++l ++            ++a+s++++++++d+v+t++++ ++v++v++++l ++                
     CCE27043.1   1 MAQNLrskLQPTDSLCLFDANPHVMKKLETDMsaaatgkgprTELADSASAAAQDADTVVTVLPSPQHVQTVYDDILTHFssssssssssssssss 96 
                    66666444566788999999999999998886778889999999*******************************999999*************** PP

                    ....-TT-EEEE-S---HHHHHHHHHHHHH.TT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEEEEEE-E CS
  NAD_binding_2  81 ....kkgdilidgstsspedtrelakelke.kglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigakvthviG 158
                         + +++id+st++p+++r++a+++++ ++ +f+daP SGG+ gA++G+L++m+G + e ++rv+p l ++ga+v h+ G
     CCE27043.1  97 petqPQPRLFIDCSTIDPSTSRRVAQRISSsHQGHFVDAPMSGGVVGASAGSLTFMLGSPPEIVPRVQPTLLRMGAHVLHC-G 178
                    *9988889*******************8761569********************************************988.6 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   6.9   4.3e-05      0.26      65      85 ..      81      96 ..      39     105 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.3e-05
       SR-25 65 sssssssssssssssssssss 85
                ssssssss     ssssssss
  CCE27043.1 81 SSSSSSSS-----SSSSSSSS 96
                11111111.....11111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2357.41
//
Query:       CCE27044.1  [L=817]
Description: related to beta-NAP protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.7e-106  355.8   0.0   4.7e-106  355.4   0.0    1.0  1  Adaptin_N     Adaptin N terminal region
    5.6e-16   59.0   0.3    1.8e-13   50.8   0.0    3.2  3  Cnd1          non-SMC mitotic condensation complex subunit 1
    7.2e-10   39.1   6.6    0.00076   19.8   0.0    5.8  7  HEAT_2        HEAT repeats
    3.6e-09   36.1   1.0      0.015   15.5   0.0    6.1  5  HEAT          HEAT repeat
    0.00013   22.2   0.9      0.055   13.8   0.0    3.3  3  Cohesin_HEAT  HEAT repeat associated with sister chromatid co
    0.00052   20.5   3.4        3.7    8.1   0.0    5.3  5  HEAT_EZ       HEAT-like repeat
     0.0062   16.2  20.0     0.0062   16.2  20.0    1.7  2  PPP4R2        PPP4R2
  ------ inclusion threshold ------
      0.059   11.6  40.4       0.13   10.5  40.4    1.5  1  Nop14         Nop14-like family
       0.06   12.5   0.0       0.15   11.2   0.0    1.7  1  Cnd3          Nuclear condensing complex subunits, C-term dom
        3.5    6.7  19.0         10    5.1  19.0    1.8  1  TAP42         TAP42-like family
        3.5    7.4  15.0        8.6    6.1  15.0    1.6  1  RR_TM4-6      Ryanodine Receptor TM 4-6
        6.5    5.1  31.5         14    4.0  31.5    1.4  1  Mpp10         Mpp10 protein
        9.5    4.9  12.5         18    4.0  12.5    1.4  1  SAPS          SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.4   0.0  3.4e-109  4.7e-106       7     520 ..      38     618 ..      33     622 .. 0.94

  Alignments for each domain:
  == domain 1  score: 355.4 bits;  conditional E-value: 3.4e-109
                 HHHHHHCCSSS-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHHHHHHHHCC CS
   Adaptin_N   7 qelaeilnsnkdddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirglALrvLss 105
                  +++++l+s+  +d++ +e ++++i ++++ +++   f +vvk+vas ++e+K+lvY+yl   ae+++dlalL++n++qk+l+dp++ +r+lAL+++s 
  CCE27044.1  38 NQMRKLLDSR--NDREVLEGLRRVISMMYRNQNTAPFFSSVVKNVASPNLEIKKLVYIYLIHHAEQEPDLALLSINTIQKSLSDPSPHVRALALKTMSG 134
                 57899999**..*************************************************************************************** PP

                 C--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHCS CS
   Adaptin_N 106 irvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleeikkndrlllkllpklvrrLcnlltel 204
                 irvp +++++  aikk + d+spyvrk+Aal+i+k+y++dp++l++ l++ +  ll dk++ v +aAv+++ ei ++dr+  +l++ ++r L + + ++
  CCE27044.1 135 IRVPVISQIVSLAIKKGVADMSPYVRKAAALSIPKCYRLDPSQLPQ-LIDYLSLLLGDKQYYVAGAAVSAFLEI-CPDRI--DLIHRHYRALVRKIVDM 229
                 ********************************************88.7**************************.*****..***************** PP

                 -HHHHHHHHHHHCC---SSHHHH...................................................HHHHHHHCGGCGCSSCHHHHHHHHH CS
   Adaptin_N 205 dpwlqvkiiklltrlarqepeer.............................................sk....kellesllnllqssnnaVlletvnl 254
                 d+w q+   +l+t +ar+ +++                                              ++     +ll+s+++llqs+n aV+ +++++
  CCE27044.1 230 DEWSQLASMRLMTLYARSCFPRIaplkkqhvprprpqspeqqqqqkktnvddfyadssdtrgqaqqdgAVcgdlMLLLNSIKPLLQSRNSAVVVAVARC 328
                 ******************9999999********************************9999998876611556699*********************** PP

                 CCHCCCCSTHHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTT..THHH.HHHHHHHHTTS CS
   Adaptin_N 255 ivelapknelivlavnaLvrllsskdenlryvaLrtllkivkkepkavqhldlkifllktdddvsirlkaldlllklvdes..Nvke.ivkeLkkyvke 350
                 +v++      ++lav  L+ ll+ ++  ++ +aL ++++++  + ++ + ++   fl+k++d+ s+  ++l++l+ +   s   vk  i++eL+ +  +
  CCE27044.1 329 YVDVGTPEY-VKLAVGPLIALLRGPQD-IQRLALYNIVSVCLMR-PSDFVPYASHFLVKATDPASVWELKLEVLTIIFPHSppHVKSlILEELQHFS-Q 423
                 ***766555.9****************.****************.88899***************************97762256667999999999.7 PP

                 SXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT. CS
   Adaptin_N 351 vadedfksklvkaIgrlaekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsnt 449
                  +++ +++++v+aIgr+a++ ++ a ++l  ll  +++ ++++++e++ vir liq+ +e+h+ ++ +La+ l++ + ++ara +iWl+Ge++    ++
  CCE27044.1 424 GSNKALVRDAVRAIGRCAQSDVKTAPRCLRLLLSQITSLDGTLAAESLTVIRHLIQQDAESHAGTVVRLAKNLDSATDPQARATIIWLVGEFSGMNGED 522
                 77999****************************************************************************************988875 PP

                 ..HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHH..............HCXGCC.THX..........HHHHHHHHHHH.XXSHHHHHHHHHHHHHH CS
   Adaptin_N 450 esasdllrslaekfvlesekvklqiltalvKly..............ltspdketqe..........kliqlvlslat.ssdlevrdRaveylqll 520
                 + a+d+lr l++ f++ese +k qil++ +K y              +t++d++tq+          +l +++ +l + ++++e+rdRa++y++ll
  CCE27044.1 523 NVAPDVLRILLKGFSSESEAAKRQILVLGAKVYlhhinrenetkgasKTDADDSTQQtvddeqhpivRLWDYLVRLVRyDTSYELRDRARMYKSLL 618
                 5********************************7777666666666644444444449999999999**************************998 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   1.3e-16   1.8e-13       2     126 ..     124     244 ..     123     248 .. 0.94
   2 ?   -3.0   0.0       4.8   6.6e+03     137     157 ..     306     326 ..     304     329 .. 0.78
   3 ?    4.1   0.0     0.032        44      42     120 ..     471     548 ..     463     564 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 1.3e-16
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdi 100
                 +Rala++t++ irvp + + ++  ++k++ D +pyVRk aa+ + k ++ d  +  ++++ l  ll D++  V   a++a+ ei     ++i +  + +
  CCE27044.1 124 VRALALKTMSGIRVPVISQIVSLAIKKGVADMSPYVRKAAALSIPKCYRLDPSQLPQLIDYLSLLLGDKQYYVAGAAVSAFLEICPDRIDLIHRHYRAL 222
                 9**************************************************************************************878888888888 PP

        Cnd1 101 isklsdalnecsewgqitilefLlsy 126
                 + k++    +++ew+q   +++++ y
  CCE27044.1 223 VRKIV----DMDEWSQLASMRLMTLY 244
                 88888....799****9999988766 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.8
        Cnd1 137 lveklcprlqhansavvlaai 157
                 l++ + p lq  nsavv+a  
  CCE27044.1 306 LLNSIKPLLQSRNSAVVVAVA 326
                 677888999999999998765 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.032
        Cnd1  42 aivvakLilndmvkekgflselakll.eDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitil 120
                 + v+ +Li++d     g + +lak l + ++p+ +a  + +  e s +++    n+ pd++  l++   + se++ ++il
  CCE27044.1 471 LTVIRHLIQQDAESHAGTVVRLAKNLdSATDPQARATIIWLVGEFSGMNG--EDNVAPDVLRILLKGFSSESEAAKRQIL 548
                 67899*********************88999****************964..4678889998888877777777777776 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00065       0.9      33      61 ..     110     138 ..      80     147 .. 0.85
   2 !   19.8   0.0   5.5e-07   0.00076       6      86 ..     115     203 ..     110     205 .. 0.75
   3 !   10.3   0.0    0.0005      0.69      10      54 ..     153     203 ..     144     232 .. 0.63
   4 ?    6.2   0.0      0.01        14      35      78 ..     309     356 ..     301     362 .. 0.88
   5 ?    2.2   0.1      0.17   2.4e+02      36      62 ..     418     444 ..     389     471 .. 0.65
   6 !    8.3   0.2    0.0022         3       5      81 ..     456     546 ..     452     552 .. 0.62
   7 ?   -2.8   0.1       6.1   8.4e+03      64      83 ..     592     611 ..     589     613 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00065
      HEAT_2  33 lpaLvellededpavRraaaeaLgaigdp 61 
                 ++++ + l+d++p+vR+ a ++++ i+ p
  CCE27044.1 110 INTIQKSLSDPSPHVRALALKTMSGIRVP 138
                 78999*****************9988765 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 5.5e-07
      HEAT_2   6 qalendpdpevrraairaLgrignp...ealpaLve.llededpavRraaaeaLgaig......dpealpaLkellddddddvvReaAaea 86 
                 + l +dp+p vr+ a++++  i+ p   +++ + ++  + d +p+vR+aaa ++ ++       +p+ ++ L   l+ d+ ++v  aA++a
  CCE27044.1 115 KSL-SDPSPHVRALALKTMSGIRVPvisQIVSLAIKkGVADMSPYVRKAAALSIPKCYrldpsqLPQLIDYLSL-LLGDKQYYVAGAAVSA 203
                 456.9******************99555556665554668899***********99954422224666666664.5577888889999887 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0005
      HEAT_2  10 ndpdpevrraairaLg...rignp....ealpaLvellededpavRraaaea 54 
                  d +p+vr+aa+ ++    r+ +p    +++++L  ll d+  +v  aa+ a
  CCE27044.1 153 ADMSPYVRKAAALSIPkcyRL-DPsqlpQLIDYLSLLLGDKQYYVAGAAVSA 203
                 566666666666666655322.221122445555555566666666666655 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.01
      HEAT_2  35 aLvellededpavRraaaeaLgaigdpe....alpaLkellddddddv 78 
                  + +ll++ ++av  a+a+  + +g+pe    a+  L +ll+ ++d  
  CCE27044.1 309 SIKPLLQSRNSAVVVAVARCYVDVGTPEyvklAVGPLIALLRGPQDIQ 356
                 57799********************9998888999*****99998855 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.17
      HEAT_2  36 LvellededpavRraaaeaLgaigdpe 62 
                 L  + + ++ a  r a++a+g+++ ++
  CCE27044.1 418 LQHFSQGSNKALVRDAVRAIGRCAQSD 444
                 444444444555555555555444222 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 0.0022
      HEAT_2   5 lqalendpdpevrraairaLg...rignpealpaLvell....ededpavRraaaeaLgai....g....dpealpaLkellddddddvvRe 81 
                 l+++ ++ d  ++++ + ++    +++ ++   ++v+l+    + +dp  R+++++  g++    g     p++l++L++ + +++++  R+
  CCE27044.1 456 LSQI-TSLDGTLAAESLTVIRhliQQDAESHAGTVVRLAknldSATDPQARATIIWLVGEFsgmnGednvAPDVLRILLKGFSSESEAAKRQ 546
                 5555.555555555555555543344444444444444422145699************996444254444899999999998888877555 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 6.1
      HEAT_2  64 lpaLkellddddddvvReaA 83 
                 ++ L +l++ d++++ R +A
  CCE27044.1 592 WDYLVRLVRYDTSYELRDRA 611
                 67788888888888888876 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.1e-05     0.015       2      25 ..     110     133 ..     110     135 .. 0.89
   2 ?    5.9   0.0     0.013        18       7      24 ..     150     167 ..     143     172 .. 0.82
   3 ?    3.8   0.0     0.063        87       3      29 ..     183     209 ..     181     210 .. 0.85
   4 ?    0.8   0.2      0.58   8.1e+02       1      23 [.     306     328 ..     306     332 .. 0.90
   5 ?    1.9   0.0      0.26   3.5e+02       5      27 ..     492     515 ..     490     517 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHT-SSHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLg 25 
                 +++++k lsDpsp+VR+ A+k++ 
  CCE27044.1 110 INTIQKSLSDPSPHVRALALKTMS 133
                 5789****************9976 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.013
                 HHHT-SSHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaL 24 
                 k   D sp VR+aAa+++
  CCE27044.1 150 KGVADMSPYVRKAAALSI 167
                 667799*********987 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.063
                 HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalae 29 
                 + l  ll D+   V  aA+ a+ ++++
  CCE27044.1 183 DYLSLLLGDKQYYVAGAAVSAFLEICP 209
                 5556678******************96 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.58
                 HHHHHHHHHT-SSHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAaka 23 
                 ll+ +  ll++ ++ V  a+a++
  CCE27044.1 306 LLNSIKPLLQSRNSAVVVAVARC 328
                 6889999**************99 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.26
                 HHHHH.T-SSHHHHHHHHHHHHHH CS
        HEAT   5 llkll.sDpspeVReaAakaLgal 27 
                 l k+l s ++p+ R++ ++ +g++
  CCE27044.1 492 LAKNLdSATDPQARATIIWLVGEF 515
                 78999888*************998 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     4e-05     0.055      21      41 ..     111     131 ..     110     131 .. 0.93
   2 ?    5.1   0.1      0.02        28      18      38 ..     143     163 ..     139     163 .. 0.91
   3 ?   -1.8   0.0       2.9     4e+03      31      38 ..     427     434 ..     426     434 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4e-05
                   HHHHHHHHSS-HHHHHHHHHH CS
  Cohesin_HEAT  21 dtiarrltDsspsVRdAaLel 41 
                   +ti++ l+D+sp VR+ aL++
    CCE27044.1 111 NTIQKSLSDPSPHVRALALKT 131
                   89****************986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.02
                   HHHHHHHHHHHSS-HHHHHHH CS
  Cohesin_HEAT  18 evldtiarrltDsspsVRdAa 38 
                   +v  +i++   D sp VR+Aa
    CCE27044.1 143 IVSLAIKKGVADMSPYVRKAA 163
                   68899***************8 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.9
                   -HHHHHHH CS
  Cohesin_HEAT  31 spsVRdAa 38 
                   ++ VRdA+
    CCE27044.1 427 KALVRDAV 434
                   799****7 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.034        47      34      50 ..     114     130 ..      99     133 .. 0.83
   2 !    8.1   0.0    0.0027       3.7       1      51 [.     157     203 ..     157     204 .. 0.87
   3 ?    2.7   0.1      0.13   1.8e+02       7      48 ..     320     359 ..     313     383 .. 0.82
   4 ?    0.3   0.0       0.8   1.1e+03       5      17 ..     431     443 ..     427     461 .. 0.65
   5 ?   -1.8   0.0       3.6   4.9e+03       4      41 ..     505     540 ..     492     547 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.034
     HEAT_EZ  34 lalLnddsdeVRaaAag 50 
                  + L+d+s++VRa A+ 
  CCE27044.1 114 QKSLSDPSPHVRALALK 130
                 47899*********986 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0027
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAaga 51 
                 + vR aAa+ +      + +l++ ++p+++++L  lL d++  V +aA+ a
  CCE27044.1 157 PYVRKAAALSI----PKCYRLDPSQLPQLIDYLSLLLGDKQYYVAGAAVSA 203
                 57999999999....589999999**********99998877999999877 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.13
     HEAT_EZ   7 Aaw.aLGr..laggepellqplvpeilpaLlalLnddsdeVRaaA 48 
                 A+  a++r  + +g pe+++++v  ++++L       +++++  A
  CCE27044.1 320 AVVvAVARcyVDVGTPEYVKLAVGPLIALLR-----GPQDIQRLA 359
                 5555778888899999999988888888888.....777776555 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.8
     HEAT_EZ   5 raAawaLGrlagg 17 
                 r A++a+Gr+a+ 
  CCE27044.1 431 RDAVRAIGRCAQS 443
                 67999**987743 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 3.6
     HEAT_EZ   4 RraAawaLGrlaggepellqplvpeilpaLlalLndds 41 
                 R+  +w +G  ++ +++    + p++l+ Ll++ +++s
  CCE27044.1 505 RATIIWLVG--EFSGMNGEDNVAPDVLRILLKGFSSES 540
                 455556666..444555555566777777777776665 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.6       5.7   7.8e+03     251     272 ..     563     584 ..     553     587 .. 0.46
   2 !   16.2  20.0   4.5e-06    0.0062     172     285 ..     690     803 ..     649     806 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 5.7
      PPP4R2 251 kdddeeddeedtdyveeeedde 272
                 ++++  ++ + +d+ ++ +dde
  CCE27044.1 563 NETKGASKTDADDSTQQTVDDE 584
                 3333333333333444444433 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 4.5e-06
      PPP4R2 172 nsssqedsedvslvsipwvdekteselspfikeidsim.svnlgfedeeekeeddneseesaseseeiteekdesvkveekdddeeddeedtdyveeee 269
                 n+s +++  + s+v    + +++ s++ p+  + + +  +v +++ d+   e+ +++  e + e+ee tee+de+ + +e++d++ed++ed+d +eeee
  CCE27044.1 690 NASASSRYGENSTVPAGDMLDQAASSRPPQAGQANGLGeGVGTKTLDDWLAED-NEKGVEGEIEAEESTEEEDEDEEDDEDEDEDEDEDEDDDEDEEEE 787
                 44555555555555555555555555555555555442133333333333333.222233444555666666666666666666666666666666666 PP

      PPP4R2 270 ddesedddeeeeeeee 285
                 d+e+e+d+ eeeee++
  CCE27044.1 788 DEEEEEDEYEEEEESD 803
                 6666666655555555 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  40.4   9.3e-05      0.13     296     416 ..     687     802 ..     676     816 .. 0.44

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.3e-05
       Nop14 296 geedeeeeeekkkkkkke.asaDdldddfvleeeeeeeefglgkglka.......taeeeeeededdfeedddlveseseeeeeeeeedeeeeedeeee 386
                  e  ++  ++++ +++++ + +D ld+  +    ++ ++ glg+g+++              ed+++  e +   e e++   eee+edee++ede+e+
  CCE27044.1 687 DE--DNASASSRYGENSTvPAGDMLDQAASSRPPQAGQANGLGEGVGTktlddwlA------EDNEKGVEGE--IEAEEST--EEEDEDEEDDEDEDED 773
                 33..222223333333336999************************6422333331......3333332222..2222211..2222222222222222 PP

       Nop14 387 eeeeededdlsdleseeeeeedeleeelle 416
                 e+e+ed+d+++++ ++eeeeede eee++ 
  CCE27044.1 774 EDEDEDDDEDEEE-EDEEEEEDEYEEEEES 802
                 2222211111111.1122223332222211 PP

>> Cnd3  Nuclear condensing complex subunits, C-term domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.15      36     146 ..     423     553 ..     405     600 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
                 C-SSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHH....HH-CGGGGGGHH.......................... CS
        Cnd3  36 rskeaairelglkcLglfclldkklakenlklflqalskgneelkiialkaifDlll....lhglevldkekkedsd.eeeees............... 114
                 + +++a+ + ++++ g ++  d k+a  +l+l+l ++++ + +l + +l +i  l+      h  +v++ +k+ ds  +  +++               
  CCE27044.1 423 QGSNKALVRDAVRAIGRCAQSDVKTAPRCLRLLLSQITSLDGTLAAESLTVIRHLIQqdaeSHAGTVVRLAKNLDSAtD--PQAratiiwlvgefsgmn 519
                 446899999*****************************77888888888888877762223588888888888877632..222468999999999999 PP

                 .......HHHHHHHHHHC-TT-HHHHHHHHHHHHH CS
        Cnd3 115 ...essksllkllykaLdsednpelqaiaaeglcK 146
                    +   ++l++l+k ++se+++  + i++ g +K
  CCE27044.1 520 gedNVAPDVLRILLKGFSSESEAAKRQILVLG-AK 553
                 99888899999999999988777766666665.45 PP

>> TAP42  TAP42-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  19.0    0.0075        10     252     317 ..     725     799 ..     680     801 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0075
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXX.....XXXXXXXXXXXXXXXXX CS
       TAP42 252 gpghslPtMtvdEyleeevrrGniiegggeasakeeeeee..........deeed.eekadeeetqkarawDefkdd 317
                 g g  + t t+d++l e  ++G   e ++e+s +ee+e+e          d  ed ++++deee+ ++++ De+ ++
  CCE27044.1 725 GLGEGVGTKTLDDWLAEDNEKGVEGEIEAEESTEEEDEDEeddedededeD--EDeDDDEDEEEEDEEEEEDEYEEE 799
                 667777899***********9884443333333333333344566655432..224577888999999******997 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  15.0    0.0062       8.6      64     145 ..     720     801 ..     683     812 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0062
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXX CS
    RR_TM4-6  64 kkseagLgDlseteaeesptpelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkk 145
                  ++ +gLg+   t++ +   +e ++k  e e+++ee  eee++ +e+ e++d+++ e e+ ++ +eee++e+ee+e+e++ +
  CCE27044.1 720 AGQANGLGEGVGTKTLDDWLAEDNEKGVEGEIEAEESTEEEDEDEEDDEDEDEDEDEDEDDDEDEEEEDEEEEEDEYEEEEE 801
                 5566777776666666665577777766555555555444444444444444444443333333223222222222222222 PP

>> Mpp10  Mpp10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  31.5    0.0098        14     252     297 ..     751     802 ..     722     814 .. 0.31

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0098
       Mpp10 252 kkdeeeadeeeedeeee......eeeeeeeeeeeeeedleeedeeeeeeeee 297
                  ++ee+++ee+edee++      e+e+e+++e+eeeed+eee++e eeeee+
  CCE27044.1 751 IEAEESTEEEDEDEEDDedededEDEDEDDDEDEEEEDEEEEEDEYEEEEES 802
                 1111111111111111100000011111111111111111111111111111 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  12.5     0.013        18     265     324 ..     744     804 ..     677     816 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.013
        SAPS 265 eealedvs..deaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseede 324
                 e+++e  +  +e+++ee++++ed +d+ded +++e++++++ ++e++e+e+d+ ee++e+d+
  CCE27044.1 744 EKGVEGEIeaEESTEEEDEDEEDDEDEDEDEDEDEDDDEDE-EEEDEEEEEDEYEEEEESDD 804
                 33333333222222333333333333333333333333333.22222222222223333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (817 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1435  (0.0800379); expected 358.6 (0.02)
Passed bias filter:                      852  (0.0475208); expected 358.6 (0.02)
Passed Vit filter:                       247  (0.0137766); expected 17.9 (0.001)
Passed Fwd filter:                        89  (0.00496402); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.22u 0.36s 00:00:01.58 Elapsed: 00:00:00.50
# Mc/sec: 4917.21
//
Query:       CCE27045.1  [L=882]
Description: uncharacterized protein CPUR_00517 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 6435.50
//
Query:       CCE27046.1  [L=136]
Description: uncharacterized protein CPUR_00518 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-08   33.4   0.3    1.4e-05   24.8   0.0    2.1  2  Robl_LC7  Roadblock/LC7 domain


Domain annotation for each model (and alignments):
>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1   0.00025       4.5       3      31 ..      14      47 ..      12      67 .. 0.69
   2 !   24.8   0.0   7.5e-10   1.4e-05      39      90 ..      79     130 ..      67     131 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00025
                HHHHHHCCHHCTECEEEEEETT.S-EEEE....C CS
    Robl_LC7  3 eelleelqsvpgvrgalvvskd.Glviat....s 31
                ee l +l+  pgvr  +v+++  G +i+t    s
  CCE27046.1 14 EEKLGRLATKPGVRAGIVLDRAsGAIIKTsgelS 47
                77899**************975378887754433 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 7.5e-10
                 HHHHHHHHHHHHHHHHHHHHCT.SSSECEEEEEETTEEEEEEECTTTEEEEEE CS
    Robl_LC7  39 dqlAalasgllsaakaaarelg.egelkelliegkkgelyltpagegalLvvl 90 
                 + +Aa++ + ++a+  ++++++ e+ l+ l++++k++e++++p ++ ++L+v+
  CCE27046.1  79 EDFAAMIWNYVNASAHLVQDMDkEDALRLLRLRTKRQEIVIVPDAK-YILTVI 130
                 679*******************************************.999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1020.86
//
Query:       CCE27047.1  [L=342]
Description: related to fruit fly brahma transcriptional activator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-27   95.2   1.9    9.7e-27   93.6   0.0    2.5  4  Ipi1_N    Rix1 complex component involved in 60S ribosome mat
  ------ inclusion threshold ------
      0.059   12.8   0.1      0.091   12.2   0.1    1.2  1  DUF5578   Family of unknown function (DUF5578)
      0.083   13.3   0.0       0.19   12.1   0.0    1.6  1  HEAT_2    HEAT repeats


Domain annotation for each model (and alignments):
>> Ipi1_N  Rix1 complex component involved in 60S ribosome maturation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.1   6.6e+03      84      84 ..      23      23 ..       2      53 .. 0.48
   2 ?   -1.2   0.1      0.52   3.1e+03      80      98 ..      65      83 ..      39      89 .. 0.50
   3 ?   -1.1   0.0      0.48   2.8e+03      26      43 ..      76      93 ..      69     120 .. 0.76
   4 !   93.6   0.0   1.6e-30   9.7e-27       2     102 .]     131     229 ..     130     229 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
      Ipi1_N 84 k 84
                +
  CCE27047.1 23 G 23
                1 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.52
      Ipi1_N 80 sssskktskksrlkvLsvl 98
                s +s++ s k+r  +L+ l
  CCE27047.1 65 SLASSSKSDKQRRDALAYL 83
                2222222455555555444 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.48
      Ipi1_N 26 redslkfLdllLevapee 43
                r+d+l++L   L  +p  
  CCE27047.1 76 RRDALAYLTSQLSTCPPT 93
                889999999999999876 PP

  == domain 4  score: 93.6 bits;  conditional E-value: 1.6e-30
      Ipi1_N   2 elaphaeslllyirsAmTHispdIredslkfLdllLevapeelvssa..wvktLnnflallgwskeksskgstsakatsssssskktskksrlkvLsvl 98 
                 ++++ +e+ ++yir++mTH+s+dI +d+l  +++lLeva+ elv+++  wvktLn+f+a++gw+ ++s+ g+tsa    + +s+k  ++++ +++++ l
  CCE27047.1 131 DVKHSTENASMYIRAGMTHLSADISNDALGAMEWLLEVAGFELVNCPggWVKTLNTFCAMMGWAVTSSNGGWTSA----ARTSMKPKDAQTLARQINCL 225
                 6788999********************************************************9999******96....555555559*********** PP

      Ipi1_N  99 akfL 102
                 +kfL
  CCE27047.1 226 SKFL 229
                 ***8 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.5e-05     0.091     173     257 ..      47     135 ..      21     143 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.5e-05
     DUF5578 173 eslaegnPkyqkqvykgliallacsspkaqqlalqtlrvvqeivkeak....psivepllelLkslhlevqyeaielikelmstevraa 257
                 +sl++  P++ +q  + l    +++s k ++ al  l +  ++++ ++    +++ ++ll l++ + + v+++ i+l+++l + +v+++
  CCE27047.1  47 QSLSTEAPDFVQQFKHNLSLASSSKSDKQRRDALAYLTSQLSTCPPTNpvgtNALLKKLLPLVSDTSTPVRTQLIKLLRALPEDDVKHS 135
                 689999*****999889988888999999988876666655555555411116777777888899999****************99986 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.3e-05      0.19       3      62 ..      62     131 ..      60     139 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.3e-05
      HEAT_2   3 aLlqalendpdpevrraairaLg...rignp..........ealpaLvellededpavRraaaeaLgaigdpe 62 
                 + l++++++++++ rr a+  L    +   +           +l+ L++l++d+++ vR + ++ L a+ +++
  CCE27047.1  62 HNLSLASSSKSDKQRRDALAYLTsqlS---TcpptnpvgtnALLKKLLPLVSDTSTPVRTQLIKLLRALPEDD 131
                 567888899999999999999996551...3333555666599***********************9997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2625.50
//
Query:       CCE27048.1  [L=581]
Description: related to ATP-dependent RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-45  153.0   0.0    1.3e-44  152.0   0.0    1.5  2  DEAD        DEAD/DEAH box helicase
    7.4e-29  100.3   0.0    2.6e-27   95.4   0.1    2.7  3  Helicase_C  Helicase conserved C-terminal domain
     0.0016   17.8   0.0      0.004   16.5   0.0    1.7  1  CMS1        U3-containing 90S pre-ribosomal complex subunit
  ------ inclusion threshold ------
      0.016   13.9   0.0      0.027   13.2   0.0    1.3  1  SNF2_N      SNF2 family N-terminal domain
      0.067   13.2   0.0       0.15   12.1   0.0    1.6  1  ResIII      Type III restriction enzyme, res subunit
        0.3    9.8   0.1         11    4.7   0.0    2.3  3  UTP25       Utp25, U3 small nucleolar RNA-associated SSU proc


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   0.0   4.5e-48   1.3e-44       1     174 [.     120     309 ..     120     311 .. 0.89
   2 ?   -3.6   0.0       2.6   7.9e+03      65     104 ..     374     417 ..     372     419 .. 0.60

  Alignments for each domain:
  == domain 1  score: 152.0 bits;  conditional E-value: 4.5e-48
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...................TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...................kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvll 80 
                 t+iQ+ +ip +l+++dv++ a+TGsGKT+a+lip+l++++ +                   + + +p +l+++PtreLa q++n+++kf+  + lr ++
  CCE27048.1 120 TPIQKYTIPSLLQDHDVIGIAQTGSGKTAAYLIPILSKLMGKakklaaprpnpntfvegvdQVRAEPLVLVIAPTRELAVQIFNEARKFCYRTMLRPCV 218
                 89*************************************876666666666666665555555555**************************99***** PP

                 EETTSSHHHHHHHHHTTCSEEEEEHHHHHHHHHCTS.SHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  81 iiggvaardqlskldngvdivvgtpgrlddllstgk.lnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 ++gg + r+q+  l++g+di+vgtpgrl+d++s+ + l+l++++++V+DEad++l+ + +d++++il+  +q + + k      ++SAT+p++ +
  CCE27048.1 219 VYGGLPVREQIGLLNRGCDILVGTPGRLVDFISRPNvLTLRRLKYIVIDEADEMLEANWEDELRQILTGGEQDEGNIK----YGLFSATFPRTAR 309
                 **************999*************996555499*******************************87766666....99*******8766 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.6
                 HHHHHHTTTSTSEEEEEETTSSHHHHHHHH...HTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxx RF
        DEAD  65 nnlkkfkkyidlrvlliiggvaardqlskl...dng.vdivvgt 104
                 +nl  f+ +i+l v ++  + ++++  ++l   ++g + i+++t
  CCE27048.1 374 DNLDDFLYNIGLPVTSMHADRTQKEREAALrsfRSGkAPILIAT 417
                 67778888888888777554444444444422244458888876 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.12   3.7e+02      14      71 ..     183     240 ..     171     243 .. 0.67
   2 ?    2.1   0.0     0.078   2.3e+02      47      72 ..     328     353 ..     300     355 .. 0.79
   3 !   95.4   0.1   8.7e-31   2.6e-27       2     111 .]     347     459 ..     346     459 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.12
                 TTTSEEEEEESSHHHHHHHHHHHHHT......TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEE CS
  Helicase_C  14 eeggkilifvntidrlekvklllekk......gikvavlhgelpqnereeileqfnkgesdvLi 71 
                 + +  +l++++t++ +  v++++e +       ++ +v++g lp +e++  l++     +d+L+
  CCE27048.1 183 RAEPLVLVIAPTRELA--VQIFNEARkfcyrtMLRPCVVYGGLPVREQIGLLNRG----CDILV 240
                 5566788888999944..244433333344448999***********99998876....55555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.078
                 STTSTHHHHHHHHHHHHTTSSSEEEE CS
  Helicase_C  47 hgelpqnereeileqfnkgesdvLia 72 
                  g+++ n r+ ++e+ +++++d+L++
  CCE27048.1 328 AGSTTVNIRQTVIEAEREEKRDILLS 353
                 468999****************9987 PP

  == domain 3  score: 95.4 bits;  conditional E-value: 8.7e-31
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS....SS CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp....rn 96 
                 k ++ll ll ++  g +++if+n+++++++++ +l + g+ v+ +h++ +q+ere++l++f++g+  +Liat v +rGid+ +v +Vin+dlp     +
  CCE27048.1 347 KRDILLSLL-NQMTGVRTIIFCNNRREVDNLDDFLYNIGLPVTSMHADRTQKEREAALRSFRSGKAPILIATGVTARGIDVRNVMHVINYDLPliehGG 444
                 788999999.999***************9978887888*******************************************************998878 PP

                 HHHHHHHHTTSSSTT CS
  Helicase_C  97 vtsyiqriGRtgRag 111
                 +++y +riGRtgR+g
  CCE27048.1 445 IEEYTHRIGRTGRIG 459
                 *************97 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-06     0.004     166     209 ..     225     268 ..     146     272 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
        CMS1 166 leesvtylkksrigiavGtpgRildLl.eeeslsvdeLkrivlDa 209
                 ++e++  l++    i vGtpgR++d + + ++l++  Lk+iv+D 
  CCE27048.1 225 VREQIGLLNRG-CDILVGTPGRLVDFIsRPNVLTLRRLKYIVIDE 268
                 55666666553.6799***********889*************96 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.1e-06     0.027      64     189 ..     142     272 ..     118     286 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.1e-06
                 TTS--HHHHHHHHH...HHTTTS---..................S-EEEE--H.HHHHHHHHHHHHH-TTS-EEE--SSHHHH---------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  64 mGLGKTvqvlalilaqrakeekdkek...........krkdtlagptLivvPa.slldqWeneierhvsssalrvlvyggqkkmkkkntkvapkllady 150
                 +G GKT   l  il +   ++k+ ++           +++ +++  +L+++P+ +l+ q  ne ++++ +  lr +v  g+       +++   l +  
  CCE27048.1 142 TGSGKTAAYLIPILSKLMGKAKKLAAprpnpntfvegVDQVRAEPLVLVIAPTrELAVQIFNEARKFCYRTMLRPCVVYGGL----PVREQIGLLNRGC 236
                 78999999999999666655555555677777777655555555559***************************99988873....446778999999* PP

                 -EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 151 dvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtl 189
                 d+++ t  +l    ++  +++vl+ ++ k++v+DE+  +
  CCE27048.1 237 DILVGTPGRLV---DFISRPNVLTLRRLKYIVIDEADEM 272
                 ********999...6789******************865 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.9e-05      0.15      24     146 ..     133     274 ..     119     306 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.9e-05
                 TSEEEEEESTTSTHHHHH.HHHHHHH-S..........................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.... CS
      ResIII  24 dkrglikmaTGtGKTlva.aklierllkkgkee.....................kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kek 99 
                 d+ ++  + TG+GKT  + + +  +l+ k+k+                       +l+++p+++l  q  +e +kf   +  + + ++ g   ++    
  CCE27048.1 133 DHDVIGIAQTGSGKTAAYlIPILSKLMGKAKKLaaprpnpntfvegvdqvraepLVLVIAPTRELAVQIFNEARKFCYRTMLRPCVVYGGLPVREqIGL 231
                 555666789********98888889999877659*******************99*****************999988777664444444333332223 PP

                 ....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS CS
      ResIII 100 dstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlga 146
                  +  ++ilv t  +l   +    +  + l   r ++i+iDEa  + +
  CCE27048.1 232 LNRGCDILVGTPGRLVDFI----SRPNVLTLRRLKYIVIDEADEMLE 274
                 4556677777777776666....555666666666777777655555 PP

>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0036        11      65      95 ..     175     205 ..     154     213 .. 0.75
   2 ?   -4.0   0.0       1.5   4.5e+03     195     209 ..     264     278 ..     258     285 .. 0.83
   3 ?    2.5   0.0     0.017        50     328     410 ..     358     438 ..     345     443 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0036
       UTP25  65 dlelrdqgftrpkvLillptreaalevvell 95 
                  +e  dq    p vL+++ptre a+++ ++ 
  CCE27048.1 175 FVEGVDQVRAEPLVLVIAPTRELAVQIFNEA 205
                 45677999999***************98765 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.5
       UTP25 195 livdqadvlemQnwe 209
                 +++d+ad +   nwe
  CCE27048.1 264 IVIDEADEMLEANWE 278
                 799**********98 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.017
       UTP25 328 skssgiliyipsyfdfvrvrnylkeekvsfaaiseysskkevsraRelFfkgkkkvlLyteRlhffrRykikgvkkvilYklP 410
                  +  +++i+  +  +   ++++l +  +  ++++   ++ke + a ++F +gk+ +l+ t  +   r  ++++v +vi Y+lP
  CCE27048.1 358 MTGVRTIIFCNNRREVDNLDDFLYNIGLPVTSMHADRTQKEREAALRSFRSGKAPILIATGVTA--RGIDVRNVMHVINYDLP 438
                 555678888888888888889999999999999999999*********************9764..8999**********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3972.16
//
Query:       CCE27049.1  [L=605]
Description: related to succinate-semialdehyde dehydrogenase (NAD(P)+) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     6e-121  404.2   0.0   7.5e-121  403.9   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.9   0.0  4.2e-125  7.5e-121       6     462 .]      81     548 ..      76     548 .. 0.96

  Alignments for each domain:
  == domain 1  score: 403.9 bits;  conditional E-value: 4.2e-125
                 SSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHH CS
      Aldedh   6 setievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyael 103
                 s  i+++ Patg+ ++ v+a+t++++d avaaA+ea+++wa+++++eR+++Lr +   + ++  e+ ++ +l+ Gk+l +a+  e+  +++ +r++ ++
  CCE27049.1  81 SADIHCYAPATGQFLGVVHASTPDEIDCAVAAAAEAQRTWAETSFSERRAVLRSLMLFILNHGREICRIAALDSGKTLVDAQLgEILVTVEKIRWTLKH 179
                 35699*****************************************************************************99*************** PP

                 HHH.HSEEEEEEC...TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT....TS-TTSEEE--SSTC CS
      Aldedh 104 aek.legevlpss...egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea....glPkgvlnvvtgsgs 194
                  e+ l+ +  p++   + k+++v++eP+Gv++a+++WN+P++ +++ ++ al +GN++v+K +e+t++s++ +  +++ a    g ++ v+++v     
  CCE27049.1 180 GEQaLRPSRRPTNlllSYKRNTVHYEPMGVIAALVSWNYPFHNMMGPIISALFTGNAIVVKVSEQTAWSSAWFLDVARGAlevhGHDARVIQMVAC-WP 277
                 ***8888998887799*************************************************************9999999**********99.66 PP

                 CHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTS...HHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHH CS
      Aldedh 195 evgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivleda...DldkaveaivkgafgnaGQvCiaasrllvqesiydefveklv 290
                 ++++++++hp++++++f+Gs++v+r++a++aak+l++v++ElGGk+p+ivle+a   Dl + ve i++g+f  aGQ+Ci ++r++   + yd++v+ l+
  CCE27049.1 278 KAAAHITSHPHIRHITFIGSQSVARHVAASAAKTLTPVVAELGGKDPFIVLESApsaDLPRIVEIILRGTFQAAGQNCIGIERVIAAAGHYDKLVDMLA 376
                 89*************************************************976666****************************************** PP

                 HHHHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEES..SHHHH CS
      Aldedh 291 eaakklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfk..deeea 386
                  ++++l++g +     dvG++is+++++++e+++++a+ +ga+ll Gg+  +++++ kg++++Pt+l +v+pdm+iaq+E+FGPVl+++++   + e++
  CCE27049.1 377 PRVQALRLGPD----ADVGAMISKQSFDRLEALIADAVTHGARLLAGGKrYTHPDYPKGHYFQPTLLVDVSPDMEIAQQECFGPVLTLLRAPssSPEDI 471
                 ********986....67********************************989*************************************99744789** PP

                 HHHHHSSSEESEEEEE-SBHH.HHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 387 ieiaNdteyGLaagvftkdle.raervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 ++iaN+ ++GL+a+v++++ +  +  + + l+aG+v +Nd +++ a +lpfgGv  Sg+Gr++g+egl+ ++++k+v
  CCE27049.1 472 LAIANAPDFGLGASVHGSERDpSMAPILRGLKAGMVAVNDFAVYYAAQLPFGGVAGSGYGRFAGEEGLRGICNLKSV 548
                 ****************9887725667999*****************99**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4207.51
//
Query:       CCE27050.1  [L=377]
Description: uncharacterized protein CPUR_00522 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   11.6   2.6       0.28   10.9   2.6    1.3  1  SURF2     Surfeit locus protein 2 (SURF2)


Domain annotation for each model (and alignments):
>> SURF2  Surfeit locus protein 2 (SURF2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.6   1.6e-05      0.28     107     222 ..     121     235 ..     114     247 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.6e-05
       SURF2 107 yeeekkqgvegvpaellekskkk..edqkkgrkkskkkkesfwepsssdeeasdsddsmsdlypdelFtekpvgkrededdkedfetdeeeeeakvsde 203
                 + + +++ ++g+p+++  +s+ +  +d ++g+++    +++  e+s+++ee+  s+   +d y   lF e p++++ d++ +++f t  +e++   +++
  CCE27050.1 121 SDDAVQEDINGIPDRSSDDSEEEcfADALNGNESLVTTHQGSSEDSEEEEEDHTSSMRRTDVY---LFDESPPTNPADNT-SDEFPTRPGEDSDIFQEG 215
                 556778899999999998888887777778888887888888888889999999*******99...79999999999965.456666666665555556 PP

       SURF2 204 ekeemev.eksklqkrkklq 222
                 + +e++v  ++ l  r   +
  CCE27050.1 216 QLNENSVvSTKDLVVRGHAE 235
                 44444440334444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2749.57
//
Query:       CCE27051.1  [L=1547]
Description: related to ATPase II [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-76  255.2  28.3    7.1e-76  255.2  28.3    2.4  3  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
    8.7e-20   70.2   0.3    2.4e-19   68.8   0.3    1.7  1  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    1.1e-13   51.1   0.0    5.7e-13   48.8   0.0    2.1  2  Cation_ATPase    Cation transport ATPase (P-type)
    2.2e-12   47.7   3.9    1.2e-08   35.5   1.1    3.2  2  Hydrolase        haloacid dehalogenase-like hydrolase
     0.0028   17.2   0.1      0.014   15.0   0.0    2.2  2  E1-E2_ATPase     E1-E2 ATPase
  ------ inclusion threshold ------
      0.016   15.0   0.4      0.038   13.7   0.4    1.6  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
      0.023   14.0  12.1      0.044   13.1  12.1    1.3  1  NOA36            NOA36 protein


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   0.6         5   1.3e+04     176     190 ..     159     173 ..     148     182 .. 0.47
   2 ?   -0.4   2.9       0.3   7.7e+02     151     229 ..     504     597 ..     497     617 .. 0.56
   3 !  255.2  28.3   2.8e-79   7.1e-76       1     248 [.    1133    1382 ..    1133    1383 .. 0.96

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 5
  PhoLip_ATPase_C 176 wtliliililgsill 190
                      +++ +i+++++ il+
       CCE27051.1 159 HNVANIFFLFLVILV 173
                      222333333332222 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.3
  PhoLip_ATPase_C 151 qlfgtlvftalvlvvnlkvale.tktwtl.....iliililgsillyflflllyssllps.........ssefygvleelfsspsfwlvlllvv 229
                      + +g++vft + + ++++  +  +k+  +     +++i+ +g +l+++l+  +++++ +s         +++ +g  + + + ++fw+ ++l  
       CCE27051.1 504 WILGVVVFTGHDTRIMMNAGITpSKRARIaremnFNVICNFGILLIMCLLAGFINAVAWSktnaslhffEYDSIGGSAPISGFITFWAAIILFQ 597
                      5566666666666666666553222222122223566666665555555555555555555555577777777777777888888888865543 PP

  == domain 3  score: 255.2 bits;  conditional E-value: 2.8e-79
  PhoLip_ATPase_C    1 vraSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsae 92  
                       +++SDyaiaqF +L+rL+lvhGrwsyrR+++ i  ffyKn+v+t++ fw+++++ f  ++l+++++++++nl+fts+pv ++g++dqdvs+ 
       CCE27051.1 1133 AMSSDYAIAQFFYLQRLILVHGRWSYRRLAESISNFFYKNMVWTFAIFWYEIFCDFDMTYLFDYTYILMFNLFFTSVPVAIMGVLDQDVSDA 1224
                       69****************************************************************************************** PP

  PhoLip_ATPase_C   93 lllkyPelYklgqknklfnlktfllwileglyqsliifflsylvlddssfs...dgktndlqlfgtlvftalvlvvnlkvaletktwtlili 181 
                       ++l++PelY++g ++ ++++++f+l++++g+yqs+++ff++yl++   ++    +    d   fg++v+  +vl++n +++++t++w+++++
       CCE27051.1 1225 VSLAVPELYRRGIERLEWTQRKFWLYMIDGVYQSVMVFFIPYLLFIPGKSVtfnGLGLEDRLRFGAYVAHPAVLAINGYILMNTYRWDWLML 1316
                       ********************************************555444446688899999****************************** PP

  PhoLip_ATPase_C  182 ililgsillyflflllyssllpsssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtffp 248 
                       +++++s l++f+++ +y+s+++ s++fy+++++++++++fw+v+++v+v++l+p++++k++++++ p
       CCE27051.1 1317 LIVIISDLFIFFWTGVYTSFTS-SNYFYHTASQVYGEATFWAVFFIVPVICLFPRFAVKAIQKVYMP 1382
                       ******99***********766.7999*9**********************************9988 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.3   9.4e-23   2.4e-19      13      62 ..     133     182 ..     117     186 .. 0.91

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 9.4e-23
  PhoLip_ATPase_N  13 kyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqispls 62 
                       +++NkI+T+KYt l+F+pknL+ qF++vaN++FL+++il ++P +  ++
       CCE27051.1 133 TFPRNKIRTAKYTPLSFIPKNLWFQFHNVANIFFLFLVILVCFPIFGGVN 182
                      7*******************************************887666 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   2.2e-16   5.7e-13      20      88 ..     783     862 ..     742     864 .. 0.93
   2 ?   -2.2   0.0       1.7   4.4e+03      15      28 ..     962     975 ..     954     987 .. 0.86

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 2.2e-16
  Cation_ATPase  20 lGnktEsALlvlaekl............gldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrC 88 
                      +++E AL+  a+++            +l+++  +++++++++i+FnssrKrms++++  p+++++l++KGA  +i++r 
     CCE27051.1 783 AQSPDEEALVATARDMgftvlghsgdgiKLNVMGEERHYPILNTIEFNSSRKRMSSIVRM-PDGRIVLFCKGADSVIYARL 862
                    5789*******************************************************9.8***************9985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
  Cation_ATPase  15 devkllGnktEsAL 28 
                    + + l+G+k E+A+
     CCE27051.1 962 KLWVLTGDKVETAI 975
                    56889********8 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   1.1   4.6e-12   1.2e-08       2     185 ..     649    1014 ..     648    1021 .. 0.86
   2 !    9.4   0.1   0.00045       1.2     173     210 .]    1081    1119 ..    1064    1119 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4.6e-12
                  SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH.........HHHHHHHHHETTTE......HHHHTHHHHHHHH... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxx......xxxxxxxxxxxxx... RF
   Hydrolase    2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar.........sgaltgfatfigrg......ayaigkpewltal... 80  
                  + ++ Dk+GTLt+  ++ ++++                +p+g+a+++a  ++         +++   fa++++           i+   +l+++   
  CCE27051.1  649 EYIFSDKTGTLTQNVMEFKKATING-------------QPYGEAYTEAQAGMqkrlgidveKESARIFAEIAEAKvravegLRRINDNPYLHDNamt 732 
                  67899**********9999999999.............89999998888888777755554222233333322335445553333333344444567 PP

                  ....HCHHHHHHHHHHHHHHCHHHHHH...................................................................... CS
                  ....xxxxxxxxxxxxxxxxxxxxxxx...................................................................... RF
   Hydrolase   81 ....dippdlgaaigsaqsqgrtvall...................................................................... 103 
                      d+ +dl  + g +q+ + + ++l                                                                      
  CCE27051.1  733 fvapDFVSDLAGEHGREQQSAIEGFMLalalchtviaekvpgdpprmifkaqspdeealvatardmgftvlghsgdgiklnvmgeerhypilntief 829 
                  766688888888888888888888888********************************************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
   Hydrolase  104 ................................................................................................. 103 
                                                                                                                   
  CCE27051.1  830 nssrkrmssivrmpdgrivlfckgadsviyarlkrgeqqqlrretaehlemfareglrtlciaqkeltkeqyrdwkkehdaaaaaleqreeklesva 926 
                  ************************************************************************************************* PP

                  .....TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT..GGGE.SEEEEHHCESSTTTSHHHHHHHHHH CS
                  .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  104 .....qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG..ddyf.daviasdietvakpspegkvaaire 185 
                       +  +l+  +i+d   + +++ +++a L +agi++++ltgd  eta  +   ++  ++ +  +++ +d+++ ++ s e++v+ i++
  CCE27051.1  927 elieqDLYLLGGTAIEDR--LQDGVPDTIALLAKAGIKLWVLTGDKVETAINIGFSCNllNNDMeLIHLKVDEDESGETSDEAFVERIEK 1014
                  ****999***********..*******************************999998888566636666666666899999999888875 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00045
                  TTSHHHHHHHHHHHT.STGGGEEEEESSHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  173 kpspegkvaaireLq.gkpeevamVGDgvnDaaalaaAg 210 
                   +sp +k a++   + g    ++ +GDg+nD+a++++A+
  CCE27051.1 1081 RVSPAQKAAVVAMVKnGLDVMTLSIGDGANDVAMIQEAD 1119
                  689999999999997544446999*************98 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.3e-06     0.014      21      61 ..     380     425 ..     369     614 .. 0.79
   2 ?   -2.9   0.2       1.6     4e+03     112     164 ..    1159    1214 ..    1155    1217 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.3e-06
                   GG--TTSEEEEETT-B--SEEEEEE.....E-SEEE-TTTS---S- CS
  E1-E2_ATPase  21 kelvpGDivllkagdrvpaDgrive.....gsaevdesaLTGEslp 61 
                   k+l++GD v + + d  paD++i++     g + v++  L GE   
    CCE27051.1 380 KDLQVGDFVRIYNDDELPADVIILStsdpdGACYVETKNLDGETNL 425
                   89***********************555544459999999999765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.6
                    HHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT..HHHHH.HHHHHHHHS-TTHH CS
  E1-E2_ATPase  112 qkkldklgkvlvpvvlliallvflialllgksla..eallr.alallvaaiPcaLp 164 
                     + ++++++++ + +++ +++++   +  ++ +   ++ +  ++ l+  ++P a+ 
    CCE27051.1 1159 RRLAESISNFFYKNMVWTFAIFWYEIFCDFDMTYlfDYTYIlMFNLFFTSVPVAIM 1214
                    57888999999999999999998887777776668844444488999999998875 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4   1.5e-05     0.038     205     228 ..    1101    1124 ..    1085    1130 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
                   GEEEEESSGGGHHHHHHSSEEEEE CS
  Hydrolase_3  205 eviafGDgeNDieMLeaaglgvAm 228 
                   +++++GDg ND++M++ a++gv +
   CCE27051.1 1101 MTLSIGDGANDVAMIQEADVGVGI 1124
                   689***************999965 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  12.1   1.7e-05     0.044     211     300 ..      18     109 ..      13     113 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.7e-05
       NOA36 211 ipcpkcgyetqetkdlslstrslkfgrqkqadgsddddddeedsdydaylkalasg...ddeddegdedddddddeedddeeeddedeeeeee 300
                 +p  +  + t++    s s + l+   + q++ +++++d +++ + +a +++  sg   dd dd+gd+dd ddd+++   +++dd ++e+ee+
  CCE27051.1  18 VPTQRARWATRKMTVKSSSNKRLSLLNRMQHKRTQSEKDVAASDGNGAPFESRHSGrdgDDGDDDGDDDDGDDDENHGG-DNDDDGESEDEED 109
                 5666777777776666767666666555555555555555555566666666666511133333333333333332222.2233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1056  (0.058899); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.09u 0.29s 00:00:01.38 Elapsed: 00:00:00.46
# Mc/sec: 10119.59
//
Query:       CCE27052.1  [L=624]
Description: uncharacterized protein CPUR_00524 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 4209.66
//
Query:       CCE27053.1  [L=229]
Description: probable Vacuolar ATP synthase subunit E [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-67  227.1  12.1    1.5e-67  226.9  12.1    1.0  1  vATP-synt_E     ATP synthase (E/31 kDa) subunit
  ------ inclusion threshold ------
       0.13   12.5   1.1       0.24   11.7   0.3    1.9  1  pXO2-72         Uncharacterized protein pXO2-72
       0.13   12.0  10.6        1.6    8.5   4.9    3.0  3  SurA_N_3        SurA N-terminal domain
       0.14   11.3   2.4       0.25   10.5   2.4    1.4  1  Methyltransf_7  SAM dependent carboxyl methyltransferase


Domain annotation for each model (and alignments):
>> vATP-synt_E  ATP synthase (E/31 kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.9  12.1   3.4e-71   1.5e-67       1     199 []      21     219 ..      21     219 .. 0.99

  Alignments for each domain:
  == domain 1  score: 226.9 bits;  conditional E-value: 3.4e-71
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHCCCCH CS
  vATP-synt_E   1 fIrqeAeekAeeIkakaeeefeiekaklveeeeekieeayekkeKqaelqkkiaiSnalnkarlkvLkareevleevfeeaekkLaeveedkdeYkel 98 
                  fI+qeA ekA+eI+ ka+eefeiek+klv++e+++i+ +y+kk Kqa ++++i+ S+++nk+rlkvL ar+e+l+++fe+a+kkL + ++dk +Y+++
   CCE27053.1  21 FIKQEAMEKAREIEIKANEEFEIEKSKLVRQETDAIDTQYDKKFKQATMSQQITRSTVANKTRLKVLGARQELLDSIFEDAQKKLVDGAKDKAKYQKI 118
                  8************************************************************************************************* PP

                  HHHHHCCCCCCC-SSCEEEEECCCCHHCCCCTHCCCCCCHHCCSSSS--SEEEEESSEBTTSSSEEEECCSSSCEEECCCHHHCHHHHHHHHHHCCCC CS
  vATP-synt_E  99 lkkLivqalvkleepevivrarkeDaelveealdkaaeeykaktkkktvevagdeedfledvlGGvvleaadgkikvnnTlearLelvleqllpeirk 196
                  lk+L+ +++++l+ep+++v+ark+D ++v++a+++a++eyk+++++++ +++++ + +++  +GGvv+++ +gki++nnT+e rLel++++  p++r+
   CCE27053.1 119 LKGLLLEGFYALNEPKMLVQARKKDSDVVNKAIEEAVKEYKKQVGSNVEAKIDEANPLPAGSAGGVVIVSGNGKIDINNTFETRLELLKDASAPAVRE 216
                  ***********************************************888888888888*************************************** PP

                  CHC CS
  vATP-synt_E 197 aLF 199
                  aLF
   CCE27053.1 217 ALF 219
                  **9 PP

>> pXO2-72  Uncharacterized protein pXO2-72
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   5.3e-05      0.24      30      52 ..     139     161 ..     128     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.3e-05
     pXO2-72  30 krlkdselldkLikeGklkyykP 52 
                  r kds++++k i e    y k 
  CCE27053.1 139 ARKKDSDVVNKAIEEAVKEYKKQ 161
                 599***********987777665 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.012        55     108     129 ..       6      27 ..       3      32 .. 0.82
   2 ?    8.5   4.9   0.00036       1.6      57     139 ..      40     120 ..      29     125 .. 0.73
   3 ?    2.0   0.0     0.035   1.6e+02      54      81 ..     147     174 ..     136     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.012
    SurA_N_3 108 vsdeevakeiasipaFqedGkF 129
                  sd++v++e++++ aF +++  
  CCE27053.1   6 LSDQQVDNELRKMTAFIKQEAM 27 
                 69**************876655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00036
    SurA_N_3  57 ayrrqleqlrqqlggnldaelldelglrqqvldqlidealllqeakklglsvsdeevakeiasipaFq.edGkFdkerYkqlLa 139
                 +++ ++++l +q  +++d +   +++++q++++q i++  ++++ + + l + +e +++  ++ +  + +dG  dk++Y+++L+
  CCE27053.1  40 EFEIEKSKLVRQETDAIDTQY--DKKFKQATMSQQITRSTVANKTRLKVLGARQELLDSIFEDAQ-KKlVDGAKDKAKYQKILK 120
                 555556666666545554333..4679**************999987777776666655554444.4558************97 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.035
    SurA_N_3  54 fqqayrrqleqlrqqlggnldaelldel 81 
                 +++a+++ ++++++q+g n+ a+  +++
  CCE27053.1 147 VNKAIEEAVKEYKKQVGSNVEAKIDEAN 174
                 789999999********99998877665 PP

>> Methyltransf_7  SAM dependent carboxyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.4   5.6e-05      0.25     242     322 ..      34     114 ..      13     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.6e-05
                     HHHHH-SEEEEEEEE.....EE------SSTT-HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHCCCHHHHHHHTTHHTT- CS
  Methyltransf_7 242 viekegsFkieklelfeinwdeeeeeasevkddassgkevakslravleplleshfgeeildelferyaekveeeelekek 322
                      i+++++F+iek +l+++++d+ ++++++++++a+ ++++++s+ a    l +    +e+ld++fe +++k+ + ++ k+k
      CCE27053.1  34 EIKANEEFEIEKSKLVRQETDAIDTQYDKKFKQATMSQQITRSTVANKTRLKVLGARQELLDSIFEDAQKKLVDGAKDKAK 114
                     5999***********9988888666666666777777777777777777776666669************99875554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1805  (0.100675); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1672.03
//
Query:       CCE27054.1  [L=543]
Description: uncharacterized protein CPUR_00526 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-13   48.4   8.3    1.2e-12   47.6   8.3    1.3  1  Mg_trans_NIPA  Magnesium transporter NIPA
    0.00016   21.8  14.0     0.0022   18.2   0.2    2.6  2  EamA           EamA-like transporter family
    0.00023   20.5   1.2    0.00023   20.5   1.2    2.0  2  PUNUT          Purine nucleobase transmembrane transport


Domain annotation for each model (and alignments):
>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   8.3     2e-16   1.2e-12       5     289 ..      15     308 ..      12     311 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 2e-16
  Mg_trans_NIPA   5 iGvlLavssslfigssfilkkkgllrlarkgevrageGGyaylkevlWwa..GlltmavGeaanfaayafaPatLvtPLGalsvivsavlasllLk 98 
                     G+++ ++s+ + +  + l++k+++  ++kg     +    y +   W    G+  ma    +  +  +  P  +++ L a  +++ +v a+l+L 
     CCE27054.1  15 LGIVVGLLSTSVQSLGLTLQRKSHILEGEKGPHDVQRPP--Y-RRRRWQLgmGMFVMA-NLLGSTIQISTLPLPVLSTLQAAGLVFNSVCATLILS 106
                    688899999999999999999999999999954443333..3.444455401555544.33556666778899999******************** PP

  Mg_trans_NIPA  99 ekLkllgllGcllailGstvlvihaPkeeeieslkevadllvdpaflvyvilvvvvvlvl......i.....lyveprkGktnilvyitlcsllgs 183
                    e +    l G ll   G++++ i+      +++l+e+  ll    f+v+++l    v++l      +     l  + r+   + ++y ++   +++
     CCE27054.1 107 EPFTPWSLGGTLLVTTGAVLIAIFGAIPSPAHDLDELLVLLSRKPFIVWMALQALFVVALgtaidlVnslssLSHNSRFRLARGIIYGVISGDVSA 202
                    *************************************************99876666655222111211111233456666777999999999999 PP

  Mg_trans_NIPA 184 ltvisvk.algiaikltlaGkaqlkyalawilllvlvicvvlqinyLnkaldifntsivtPvyyvlfttlvivasailfkefleasvddvlgelsG 278
                     +++  k a+ + i +t+ G +q+ +++ w ++l+l+     q+ yL + l + +ts++ P+ + ++  ++i+ ++i f + +    ++      G
     CCE27054.1 203 HALLFAKsAVELCI-KTIGGSNQFAHWQSWAIVLCLILLALGQLYYLHRGLKLVSTSVLYPLVFCVYNIIAILDGLIYFDQVSLIPPLHAGLIALG 297
                    99998883566666.589**************************************************************9998888887777788 PP

  Mg_trans_NIPA 279 fllvllgvfll 289
                     +++l+gv+ l
     CCE27054.1 298 TVILLSGVLAL 308
                    88888888765 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   3.7e-07    0.0022      82     136 ..      74     128 ..      37     129 .. 0.77
   2 !    5.8   9.1    0.0025        15      57     136 ..     224     302 ..     152     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.7e-07
        EamA  82 ffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                  ++ +++++  + s +++   vf  +++ l+l e++t ++l g++l+  G++li 
  CCE27054.1  74 STIQISTLPLPVLSTLQAAGLVFNSVCATLILSEPFTPWSLGGTLLVTTGAVLIA 128
                 3556778888899****************************************96 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0025
        EamA  57 aklslkdwllllllgllgtvlaf.llffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 +  ++++w+++l l l   +l++ + +  +lk +s s+  ++++ +  +++il  l++  +++l+  l ++li lG++++l
  CCE27054.1 224 QFAHWQSWAIVLCLIL--LALGQlYYLHRGLKLVSTSVLYPLVFCVYNIIAILDGLIYFDQVSLIPPLHAGLIALGTVILL 302
                 3578888877666555..56666234469************************************************9986 PP

>> PUNUT  Purine nucleobase transmembrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   1.2   3.8e-08   0.00023      82     147 ..      64     129 ..      58     145 .. 0.83
   2 ?   -1.0   0.2      0.14   8.1e+02     125     208 ..     150     237 ..     142     243 .. 0.54

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.8e-08
       PUNUT  82 GllvavdnllyslgllylpvstfslilatqLaFtaifsalinkqkftrfiinsvvlltisaallal 147
                 G+ v ++ l + +  + lp+ + s + a+ L+F+++ + li +  ft++++   +l+t +a+l+a+
  CCE27054.1  64 GMFVMANLLGSTIQISTLPLPVLSTLQAAGLVFNSVCATLILSEPFTPWSLGGTLLVTTGAVLIAI 129
                 444444444456778899*********************************************997 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.14
       PUNUT 125 qkftrfii.nsvvlltisaallalssssdkpaeeskkkyvigfiltlaas..llfaLlL..slvellfekvlkketfslvlemqivlsl 208
                 + f ++++  +++++ +++a+ +++s   + +++s+ + + g+i  ++++   ++aLl+  s vel+ +++  ++ f+      ivl+l
  CCE27054.1 150 KPFIVWMAlQALFVVALGTAIDLVNS-LSSLSHNSRFRLARGIIYGVISGdvSAHALLFakSAVELCIKTIGGSNQFAHWQSWAIVLCL 237
                 55555554145555555555555444.44556666677777777766644112344544224566666666666666666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3844.30
//
Query:       CCE27055.1  [L=228]
Description: uncharacterized protein CPUR_00527 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.085   12.6  11.8       0.16   11.7  11.8    1.5  1  Tetraspanin      Tetraspanin family
       0.34   11.2  12.4       0.26   11.6   8.9    2.5  2  DUF4064          Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  11.8   1.7e-05      0.16      10     226 ..      17     206 ..      10     209 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.7e-05
                  XXXXXXXXXXXXXXXXXXX......XXX.....................XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  10 llfwligivllavGvwlrl......khaeaalacllsesaedpailaillivvGvllfllgflGcig.alkenkcllltfsllllvlfllelaagilg 100
                   lf  +g++l++++  +++      +     ++    + +e  ++   + ++ G l+++ +++ ++g ++  ++  l++   l++v+ +  l++g+++
   CCE27055.1  17 TLFSATGVLLIIFSYLAKSqigntaR---DGHEVIRLSLYE--TFPLAAGFANGGLVLAASVVVLLGvVFAGRRRWLQMGGYLVIVCGVYSLCLGVYL 109
                  68999********9666556664431...222222222222..2222244555555555555555543333444555555555555666666667888 PP

                  X--HHH........HHHHHHHHHHHHHHHHHHTHHHHHHHHHHT---SSHH..HHGSSTT-SSSCGCC.......................S--HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin 101 fvfsdkargkvseiinnaievkyrddldlkkcqnlldslqkklsCCGvnsykDwsdnpsrencsvPes.....CclptpnqayleasksiytegCidk 193
                  +v++ k        +++++   + + l lk   +    +q++++CCG              n ++P+      C  p+         +  + +gC ++
   CCE27055.1 110 WVMTLK--------LKRNF---FGTYLGLK--PSEQALVQESFQCCGYY------------NATTPAFvtdafCSSPA---------AAALIHGCGAG 173
                  888888........88888...55566664..4677889********52............33344332222344433.........45668888888 PP

                  HHHHC--XXXXX.XXXX.XXX..XXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx RF
  Tetraspanin 194 lvnwiksnlkllgggvaalgl..iqlvgillslil 226
                  ++++ + ++    ++++ +g+  +  v+il   +l
   CCE27055.1 174 ISSYGNLHIGNF-FTAL-FGMvgVDAVLILSIACL 206
                  876655555544.2222.33324566777666666 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   8.9   2.9e-05      0.26       2     101 ..       3     103 ..       2     122 .. 0.70
   2 ?   -0.6   0.1      0.18   1.6e+03      60      74 ..     185     199 ..     172     213 .. 0.48

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.9e-05
     DUF4064   2 rkaeiiLglIGgilgillglllllflfllssgefsqelteeqalsgedasavleflstllivlgvi....aliaivlgivgalllkknkk..vsGilfi 94 
                 r+a iiLg   gi+ ++++ ++ll++f   ++++  +      + + +    l+  +t+ +++g++    +l a+v+ ++g+++  + +   ++G+l+i
  CCE27055.1   3 RTANIILGTTLGIITLFSATGVLLIIFSYLAKSQIGN-----TARDGHEVIRLSLYETFPLAAGFAngglVLAASVVVLLGVVFAGRRRWlqMGGYLVI 96 
                 7888888876555666666666666555555443333.....33444444445555555555554444449999999999999999666699******* PP

     DUF4064  95 iaailsl 101
                 ++++ sl
  CCE27055.1  97 VCGVYSL 103
                 ****987 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.18
     DUF4064  60 llivlgvialiaivl 74 
                 ++++l+ ++ + +vl
  CCE27055.1 185 FFTALFGMVGVDAVL 199
                 222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1770.26
//
Query:       CCE27056.1  [L=224]
Description: probable transcription factor of the MADS box family MCM1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-21   74.1   0.1    6.4e-21   73.6   0.1    1.2  1  SRF-TF    SRF-type transcription factor (DNA-binding and dime


Domain annotation for each model (and alignments):
>> SRF-TF  SRF-type transcription factor (DNA-binding and dimerisation domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.1   3.6e-25   6.4e-21       1      48 []      63     110 ..      63     110 .. 0.99

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 3.6e-25
      SRF-TF   1 kIeneraRqvtFsKRrnGLfKKAsELsvLcgvevavvvfspngklytf 48 
                 +I+++++R++tFsKR++G++KKA+ELsvL+g++v ++v+s++g +ytf
  CCE27056.1  63 FISDKSRRHITFSKRKAGIMKKAYELSVLTGTQVLLLVVSETGLVYTF 110
                 69*********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1830.99
//
Query:       CCE27057.1  [L=197]
Description: uncharacterized protein CPUR_00529 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-30  106.4   0.5    2.4e-30  106.1   0.5    1.1  1  Ctr       Ctr copper transporter family


Domain annotation for each model (and alignments):
>> Ctr  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.5   1.3e-34   2.4e-30       1     147 [.      31     187 ..      31     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 1.3e-34
         Ctr   1 mlFhwstddtilfrsWritskgqlagsciglfllaifyeflralrerlerewdrhl.a.........rsrekrkaassplvdssssseeeaea...... 83 
                 m+F+++ ++ ++ +sW+++s g++ag+ci+l++lai  ++l a r   e +w  +  +         +s ++ +aa+               +      
  CCE27057.1  31 MVFQTNPSTPLYTSSWTPQSPGAYAGTCIFLIFLAITARLLLAARTLQEARWLDQAlQrryvvaqgqTSLSEMMAAH---------------Eppvgam 114
                 99**********************************************99888666322333444332333333333...............2233344 PP

         Ctr  84 ...........kstsslskseakksvrttpeqqlirallyvvqvllaYilMLlvMtyNvglflavilGagvGefl 147
                                ++++  + +++r +++   +ra++ +v v+++Y+lML+vMt+Nvg+fl+v++G++vG+++
  CCE27057.1 115 kmalsangveeAVVVVARRGCEVRPWRVSVD--PLRAVMDTVIVGVGYLLMLAVMTMNVGYFLSVLAGVFVGSLA 187
                 5555566777788888999999999999999..***************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1514.92
//
Query:       CCE27058.1  [L=380]
Description: related to finger protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-10   39.7  12.6    0.00012   22.3   4.8    2.7  2  zf-C2H2      Zinc finger, C2H2 type
      3e-09   36.9  10.7     0.0005   20.7   1.0    3.2  2  zf-C2H2_4    C2H2-type zinc finger
    6.4e-08   32.7  13.2    1.5e-06   28.4   1.5    3.0  2  zf-H2C2_2    Zinc-finger double domain
    0.00027   21.2   3.7       0.35   11.2   0.0    3.0  3  BolA         BolA-like protein
  ------ inclusion threshold ------
      0.073   13.1   0.4      0.073   13.1   0.4    3.0  3  zf-C2H2_6    C2H2-type zinc finger
       0.11   12.9   3.2       0.38   11.1   0.0    2.4  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
       0.12   12.3   2.7       0.31   11.0   2.7    1.7  1  zf-C2HC_2    zinc-finger of a C2HC-type
       0.28   11.0  11.1        2.1    8.2   0.5    2.8  2  zf-H2C2_5    C2H2-type zinc-finger domain
        1.1    9.1   6.8        2.1    8.2   0.6    2.4  2  zf-C2H2_11   zinc-finger C2H2-type
        1.3    9.6   5.1        5.3    7.6   3.4    2.2  2  zf-CHY       CHY zinc finger
        1.4    9.1   9.2        3.2    8.0   1.9    2.4  2  zf-AN1       AN1-like Zinc finger
        6.6    7.3   8.6        3.7    8.1   2.0    2.3  2  zf-C2HE      C2HE / C2H2 / C2HC zinc-binding finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   4.8     8e-08   0.00012       1      23 []     297     319 ..     297     319 .. 0.98
   2 !   21.5   0.9   1.5e-07   0.00022       1      20 [.     325     344 ..     325     346 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 8e-08
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 +kC+ C++sF+r+++LkrH r+H
  CCE27058.1 297 FKCDQCTQSFSRNHDLKRHKRIH 319
                 8********************99 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.5e-07
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                 ++C+ C+ksF+rk+ LkrH+
  CCE27058.1 325 FPCSFCSKSFSRKDALKRHR 344
                 89*****************8 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   2.9   7.1e-07    0.0011       1      23 [.     297     319 ..     297     320 .. 0.95
   2 !   20.7   1.0   3.4e-07    0.0005       1      20 [.     325     344 ..     325     347 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 7.1e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 fkC++C++sFs++++L+rH + h
  CCE27058.1 297 FKCDQCTQSFSRNHDLKRHKRIH 319
                 8******************9998 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 3.4e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHl 20 
                 f+C++C+ksFs+k+aL+rH 
  CCE27058.1 325 FPCSFCSKSFSRKDALKRHR 344
                 89*****************7 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.7   0.00013       0.2       9      25 ..     285     307 ..     280     308 .. 0.80
   2 !   28.4   1.5   9.7e-10   1.5e-06       1      25 [.     311     335 ..     311     336 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
   zf-H2C2_2   9 Ht......gekpyeCplCdkaFk 25 
                 H+      +e+p++C+ C  +F+
  CCE27058.1 285 HHpqpqpqSERPFKCDQCTQSFS 307
                 44677777899**********97 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 9.7e-10
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 +L+rH r H   kp+ C++C+k+F+
  CCE27058.1 311 DLKRHKRIHLAVKPFPCSFCSKSFS 335
                 69**********************8 PP

>> BolA  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.7   2.5e+03      26      34 ..      68      76 ..      28      97 .. 0.60
   2 !    9.7   0.2   0.00067         1      19      57 ..     284     323 ..     280     325 .. 0.85
   3 !   11.2   0.0   0.00023      0.35      31      55 ..     325     349 ..     323     357 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.7
        BolA 26 ggetHFkvv 34
                ++++H++v 
  CCE27058.1 68 TANSHYQVG 76
                466666664 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00067
        BolA  19 hagha.eaggetHFkvvivseaFegkslvarhRlvyalLk 57 
                 h++++ ++++e  Fk+  + ++F+    ++rh+ ++ ++k
  CCE27058.1 284 HHHPQpQPQSERPFKCDQCTQSFSRNHDLKRHKRIHLAVK 323
                 434445889*************************997766 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00023
        BolA  31 FkvvivseaFegkslvarhRlvyal 55 
                 F +  +s++F+ k  ++rhRlv  +
  CCE27058.1 325 FPCSFCSKSFSRKDALKRHRLVKGC 349
                 667789****************876 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   1.0       8.9   1.3e+04      19      26 ..     141     148 ..     140     149 .. 0.74
   2 ?    9.5   1.4   0.00063      0.95       2      25 ..     297     320 ..     297     322 .. 0.92
   3 ?   13.1   0.4   4.9e-05     0.073       2      21 ..     325     344 ..     325     344 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 8.9
   zf-C2H2_6  19 gHkksHrk 26 
                  H ++H++
  CCE27058.1 141 QHDSHHMS 148
                 68889987 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00063
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksHr 25 
                 ++C++C  sF+   +L  Hk+ H 
  CCE27058.1 297 FKCDQCTQSFSRNHDLKRHKRIHL 320
                 89******************9886 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 4.9e-05
   zf-C2H2_6   2 heCsvCsksFpslqaLggHk 21 
                 + Cs CsksF+  +aL  H+
  CCE27058.1 325 FPCSFCSKSFSRKDALKRHR 344
                 79**************9886 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   1.0      0.26   3.8e+02       2      22 ..     297     317 ..     296     317 .. 0.90
   2 ?   11.1   0.0   0.00025      0.38       2      20 ..     325     343 ..     324     345 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.26
                  CBBTTTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlk 22 
                  f C  C   F+  ++l+ H++
   CCE27058.1 297 FKCDQCTQSFSRNHDLKRHKR 317
                  899999999**********85 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00025
                  CBBTTTTBBBSSHHHHHCC CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnH 20 
                  f C  C+K F+   al+ H
   CCE27058.1 325 FPCSFCSKSFSRKDALKRH 343
                  78***************** PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.7   0.00021      0.31       4      24 ..     326     349 ..     325     350 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
   zf-C2HC_2   4 pCpkCgRsF.npdrlekH..epvC 24 
                 pC +C+ sF   d+l +H  ++ C
  CCE27058.1 326 PCSFCSKSFsRKDALKRHrlVKGC 349
                 9*****************665555 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   4.3    0.0066       9.9       1      24 [.     297     319 ..     297     320 .. 0.94
   2 ?    8.2   0.5    0.0014       2.1       3      19 ..     327     343 ..     325     347 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0066
   zf-H2C2_5   1 YKCsqCDYstawksnLkRHlrrkH 24 
                 +KC+qC  s ++  +LkRH r +H
  CCE27058.1 297 FKCDQCTQSFSRNHDLKRHKR-IH 319
                 9*****99999********98.88 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0014
   zf-H2C2_5   3 CsqCDYstawksnLkRH 19 
                 Cs+C+ s ++k+ LkRH
  CCE27058.1 327 CSFCSKSFSRKDALKRH 343
                 ***************** PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.6    0.0014       2.1       5      26 ..     297     318 ..     294     319 .. 0.94
   2 ?    3.7   0.8     0.036        53       7      24 ..     327     344 ..     325     346 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0014
  zf-C2H2_11   5 cqCleCGlcftSqlsLsRHlfI 26 
                 ++C +C   f+    L+RH +I
  CCE27058.1 297 FKCDQCTQSFSRNHDLKRHKRI 318
                 69*****************998 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.036
  zf-C2H2_11   7 CleCGlcftSqlsLsRHl 24 
                 C  C   f+ + +L+RH+
  CCE27058.1 327 CSFCSKSFSRKDALKRHR 344
                 8889999**********9 PP

>> zf-CHY  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.4    0.0035       5.3      14      49 ..     291     332 ..     285     337 .. 0.65
   2 ?    3.9   0.5     0.051        77      16      49 ..     321     351 ..     315     364 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0035
      zf-CHY  14 pcCkklyaCreCHee.ledhelerl.....evkevlcllCet 49 
                 p+ ++ ++C++C ++ +++h+l+r+     +vk + c++C++
  CCE27058.1 291 PQSERPFKCDQCTQSfSRNHDLKRHkrihlAVKPFPCSFCSK 332
                 567889*******77445788877721122444455555554 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.051
      zf-CHY  16 CkklyaCreCHeele.dhelerlevkevlcllCet 49 
                   k ++C  C ++ + +++l+r++  +     Cet
  CCE27058.1 321 AVKPFPCSFCSKSFSrKDALKRHRLVK----GCET 351
                 5678*******7644244555555443....3444 PP

>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.9    0.0021       3.2      12      29 ..     295     312 ..     290     320 .. 0.82
   2 ?    3.9   2.0      0.04        60      11      23 ..     322     334 ..     315     337 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0021
      zf-AN1  12 lpfkCryCgkvFClkHrl 29 
                  pfkC++C ++F  +H l
  CCE27058.1 295 RPFKCDQCTQSFSRNHDL 312
                 69**********999965 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.04
      zf-AN1  11 flpfkCryCgkvF 23 
                   pf C++C+k+F
  CCE27058.1 322 VKPFPCSFCSKSF 334
                 467********99 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.0    0.0025       3.7      35      57 ..     294     315 ..     283     321 .. 0.81
   2 ?    2.6   0.8      0.13   1.9e+02      36      57 ..     323     343 ..     316     344 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0025
     zf-C2HE  35 ktpLkCtrCganfgnkfpkLKeH 57 
                 ++p+kC +C ++f ++  +LK+H
  CCE27058.1 294 ERPFKCDQCTQSFSRN-HDLKRH 315
                 68********555555.999999 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.13
     zf-C2HE  36 tpLkCtrCganfgnkfpkLKeH 57 
                 +p+ C  C+++f +k  +LK+H
  CCE27058.1 323 KPFPCSFCSKSFSRK-DALKRH 343
                 799******777666.888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2654.11
//
Query:       CCE27059.1  [L=110]
Description: uncharacterized protein CPUR_00531 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       151  (0.00842211); expected 358.6 (0.02)
Passed bias filter:                      133  (0.00741815); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 869.00
//
Query:       CCE27060.1  [L=547]
Description: acuE malate synthase, glyoxysomal [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-219  729.5   0.0     2e-219  729.3   0.0    1.1  1  Malate_synthase  Malate synthase
  ------ inclusion threshold ------
       0.02   14.0   0.0      0.033   13.3   0.0    1.3  1  HpcH_HpaI        HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> Malate_synthase  Malate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  729.3   0.0  2.2e-223    2e-219       3     518 ..      13     546 ..      11     547 .] 0.99

  Alignments for each domain:
  == domain 1  score: 729.3 bits;  conditional E-value: 2.2e-223
                      CCCHHTHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHSHHHCCTCCCH-TSS---S-EECCCCE-TCCCCCCC-CCHCCC CS
  Malate_synthase   3 fvkeevleaaeilteealefvaelvrdltprrrelLeeRdelqaeidkgelndflketkylreepewktatlhielqdrrveiiGkadrkmiin 96 
                      + +++++++++ilt +al+f+a l+r+++ +r++lLe+R+ +qaeid+g l+dfl+et ++re++ wk a+ +++l drrvei+G++drkm++n
       CCE27060.1  13 VHGRIDETHRKILTPQALAFLALLHRSFNATRKQLLERRKIRQAEIDRGVLPDFLPETRHIRENAAWKGAPPAPGLVDRRVEITGPTDRKMVVN 106
                      67889999************************************************************************************** PP

                      CCCCSSSEEEEESSTTS--.......................HHHHHHCCHHCCCHCCTTT-EEEET-TSEEEEETTSESSSSEEEEE---TTT CS
  Malate_synthase  97 alnesaittiaDfEDsvap.......................nwenlvkGqlnledavrgrisfrkenkdksYklndglegrsllfvRnrGwhl 167
                      aln+++ t++aDfE  +                         +w+n+++Gq+nl+da r++++f++   +k+Ykl++ ++++++l+vR+rGwhl
       CCE27060.1 107 ALNADVYTYMADFEGKLPTklhpycpvdlpiasppwkhssapTWDNMINGQVNLYDANRRQVDFKQG--QKEYKLRT-DRKLPTLIVRPRGWHL 197
                      ***************998899*********************************************8..9******6.99************** PP

                      EEEEEECTTCEEEHHHHHHHHHHHHHHHHCSCCTTSSEEEEE-S-SSHHHHHHHHHHHHHHHHHCTSSTTSCEEEEEE-SHHHHTTHHHHHHCT CS
  Malate_synthase 168 tekhilvdGeeisegilDfgliffhnakelklsrgggpyivlPKmegpqEaalwnevFsraedllglprgtikatvliEtlraslnldeiiyel 261
                      +ekh++vdGe+is+g++Dfgl+ffhna el + rg gpy++lPKme++ Ea+lwn+vF++a+d +g++rgti+atvliEt+ a++++deiiyel
       CCE27060.1 198 EEKHLTVDGEPISGGLFDFGLYFFHNALEL-QRRGYGPYFYLPKMESHLEARLWNDVFNLAQDSIGMARGTIRATVLIETILAAFEMDEIIYEL 290
                      ******************************.*************************************************************** PP

                      TTTEEEEEE-CHHHHHHHHHHTCCCCGCB...CGGGGCCSHHHHHHHHHHHHHHHHTT.CCCCCCCTCSEECCCEHHHCCCHHHHHHHCHHHHH CS
  Malate_synthase 262 rdrvaglNcGrlDyifseiktlreagdmvLPdRkavtktapfikaYekllvktchkrgvhamgGlaakipikkdmeaneellekvredKlrevr 355
                      r++++glNcGr+Dyifs+ik++r+++++vLPdR+ vt+t+pf++aY+kll++tchkrgvhamgG+aa+ipik+d++ane ++++vr+dKlrev+
       CCE27060.1 291 REHSSGLNCGRWDYIFSTIKKFRQNPRFVLPDRSCVTMTVPFMDAYVKLLIQTCHKRGVHAMGGMAAQIPIKDDKKANEVAMANVRADKLREVK 384
                      ********************************************************************************************** PP

                      CT-SEEEESSHHHHHHHHHHHHHCHCHCHHCCHHTTTHHHHHHHHCS.--BBHHHHHHHHHHHHHHHHHHHHHHCT-SSEEETTEEESHHHHHH CS
  Malate_synthase 356 aGadgaWvahPtlatlaaevfeevdvapnQielakeevritaddLltkipeaeeteeglrnnvqvglqYvvaWlrgvGcvpiihLmEDaATaei 449
                      aG+dg+WvahP+la +a++vf+e++ +pnQ  +++e+v +  ddLl+  + +  teeg+r+n+++gl+Y++aW+rgvGcvpi++LmEDaATae+
       CCE27060.1 385 AGHDGTWVAHPALAAIATDVFNEHMPTPNQLFVRREDVCVGRDDLLNMNVPGGVTEEGIRKNLNIGLGYMEAWIRGVGCVPINYLMEDAATAEV 478
                      ***********************************************8888999**************************************** PP

                      HHHHHHHHHHTTSC-CCHSHCHHHHHHHHHHHHHCCHHHHHHHCCTTHHHCHHHHHHHHHTTTCCC-CH CS
  Malate_synthase 450 SrqqlaqWirhgvvlkeqgvkvslelmaklvdeenarleelgkedeayreaakllkkeataeefadflt 518
                      Sr+ql+qW+rhgv+++e g +v++++  kl++e ++ l++++++ ++++ aa+++++++t+ee+adflt
       CCE27060.1 479 SRSQLWQWVRHGVTTSE-GTRVDKAYALKLLKECADGLASKAPKGNKFQLAAQYFAEQITGEEYADFLT 546
                      *****************.7*************************************************9 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.7e-06     0.033      88     195 ..     236     359 ..     229     395 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-06
                 EEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHH..TSTTEEEEEE-HHHHHHHTT-TTSTTSHHHH.............. CS
   HpcH_HpaI  88 vlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIa..avegldgvflGaeDlsadlgtkrspegtevl.............. 170
                 + +Pk e+  ea+    +++ +++ i+ a +++r  + iE+ ++  +++eI+    e   g+  G  D+  +   k  ++   vl              
  CCE27060.1 236 FYLPKMESHLEARLWNDVFNLAQDSIGMARGTIRATVLIETILAAFEMDEIIyeLREHSSGLNCGRWDYIFSTIKKFRQNPRFVLpdrscvtmtvpfmd 334
                 679*************************************************95456788999999999888766665666666667777777777774 PP

                 HHHHHHHHTTHCEEEEEEE.E-SSH CS
   HpcH_HpaI 171 dareriltaaraagiaaldtvasdi 195
                 +  + +++++ + g++a++++a++i
  CCE27060.1 335 AYVKLLIQTCHKRGVHAMGGMAAQI 359
                 3344456777777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3833.69
//
Query:       CCE27061.1  [L=1175]
Description: related to protein kinase Gin4p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-66  224.2   0.0    1.9e-65  220.9   0.0    2.3  1  Pkinase         Protein kinase domain
    6.1e-39  132.4   0.4    1.3e-38  131.3   0.4    1.6  1  Fungal_KA1      Fungal kinase associated-1 domain
    2.7e-35  121.9   0.0    1.8e-34  119.2   0.0    2.1  2  Pkinase_Tyr     Protein tyrosine kinase
    1.1e-05   24.9   0.0    2.1e-05   24.0   0.0    1.4  1  Kinase-like     Kinase-like
     0.0029   16.6   0.1     0.0062   15.5   0.1    1.5  1  Haspin_kinase   Haspin like kinase domain
     0.0063   16.5   0.1       0.23   11.4   0.0    2.5  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.012   14.9   0.1      0.033   13.5   0.1    1.7  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.074   12.6   0.0       0.21   11.2   0.0    1.7  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.9   0.0   8.5e-69   1.9e-65       2     263 ..     103     377 ..     102     378 .. 0.94

  Alignments for each domain:
  == domain 1  score: 220.9 bits;  conditional E-value: 8.5e-69
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH........................HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEE CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke........................kkvlrEikilkklkhpnivrlyevfeekdelylv 76 
                 +  ++lG+Gs+++V  ++++ t++  AvK+++++ a   ++                         ++ rE++ilk ++hpni++ly+++e+ +e+yl+
  CCE27061.1 103 QLGRTLGKGSSARVRLCRHNLTNQLAAVKIVNRRMAYLVQDssmaalskwdsslpdeangemrvpMAIEREVAILKLIEHPNIMKLYDIWENRSEIYLI 201
                 56799***************************99887777677788999************999999******************************** PP

                 EE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCB CS
     Pkinase  77 leyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeney 174
                 ley+++g+l+++++ +g l+ee a ++++q++++++y+Hs +++HrDlKpeNiLi  + ++Ki+DFG+a+  ++ ++ l + +g+++Y APE+lk+++y
  CCE27061.1 202 LEYIDQGDLFTFINSRGRLPEELAIFFFRQMMSAISYCHSFNVCHRDLKPENILITADLQIKIADFGMAALHQTATHqLATACGSPHYAAPELLKNKQY 300
                 *********************************************************************999888777********************* PP

                 .SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 175 .skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpy 263
                  +  +D Ws+Gvily +l+ + pf     + + + ++ +         ++k +++ ++ +s+ea dl++++l+++p +R+t++++ +hp 
  CCE27061.1 301 rGDRADTWSMGVILYAMLSATLPFD----DPDLRLMMAK---------TKKGQYAMPQGLSPEAEDLIRRMLQVNPDRRITIKDIWRHPL 377
                 9************************....3333344444.........56789999********************************96 PP

>> Fungal_KA1  Fungal kinase associated-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.4   5.9e-42   1.3e-38       2     118 .]    1040    1160 ..    1039    1160 .. 0.99

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 5.9e-42
  Fungal_KA1    2 kqnwFarlfsvksatkvlktslskkelrqelaklLreWkkyGlkdvksdkesntitgkvsseNilslksvkFeieiisvseh....klSlvrftkek 94  
                  kqnw++rlf+vk+at++++++ls+k++rqe++ l+reW++yGl+++++dk++n+++g+++++N+l+lk+v+F++ei++v+eh     l+++rft+e+
  CCE27061.1 1040 KQNWLTRLFRVKPATSYICLTLSRKRARQEVVLLFREWRRYGLENIHVDKQRNIVFGRLGAKNYLNLKEVEFAAEIMTVIEHgkkkPLTIIRFTQER 1136
                  89**********************************************************************************999********** PP

  Fungal_KA1   95 GsassfrklvkeiekvlrkegvLv 118 
                  G+ass++++v +++ +++++++Lv
  CCE27061.1 1137 GAASSLHRIVGTMKIMFESRHILV 1160
                  *********************996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.27   6.2e+02       2      40 ..     103     137 ..     102     151 .. 0.80
   2 !  119.2   0.0   7.9e-38   1.8e-34      47     256 ..     169     373 ..     156     375 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.27
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeea 40 
                  +lg++lG+G+ ++V  ++ +     +++  avK++++++
   CCE27061.1 103 QLGRTLGKGSSARVRLCRHN----LTNQLAAVKIVNRRM 137
                  5789***********99999....777888888887654 PP

  == domain 2  score: 119.2 bits;  conditional E-value: 7.9e-38
                  HHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE CS
  Pkinase_Tyr  47 elleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvki 144
                  ++ +e++i+k ++hpni+kl+ +  +++++++++ey+++GdL +f++++   +l  +  + f  q+ ++++y +s ++ Hrdl   N+L++ + ++ki
   CCE27061.1 169 AIEREVAILKLIEHPNIMKLYDIWENRSEIYLILEYIDQGDLFTFINSR--GRLPEELAIFFFRQMMSAISYCHSFNVCHRDLKPENILITADLQIKI 264
                  6778*******************************************98..99********************************************* PP

                  -STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHH CS
  Pkinase_Tyr 145 sDfGLardiekddeyvkkeeaklpvkWmapEslkekkft.sksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkc 241
                  +DfG+a  +  +  +++  +a  + ++ apE lk+k++   ++D Ws Gv+l+ +++ +  p+ + + + +++k k+g + ++p+  ++e  +l+++ 
   CCE27061.1 265 ADFGMAALH--QTATHQLATACGSPHYAAPELLKNKQYRgDRADTWSMGVILYAMLS-ATLPFDDPDLRLMMAKTKKG-QYAMPQGLSPEAEDLIRRM 358
                  *******98..555666667777889***********97468***************.99*****9999999988776.5789999************ PP

                  T-SSGGGS--HHHHH CS
  Pkinase_Tyr 242 weedpeeRptfselv 256
                  ++ +p++R t++++ 
   CCE27061.1 359 LQVNPDRRITIKDIW 373
                  ***********9986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   9.2e-09   2.1e-05     158     288 .]     237     366 ..     224     366 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 9.2e-09
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggft..aLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPlt 251
                   + ++  + h +++++n+l   + ++++ +f+  aL +  t+   ++ +    +a pEll ++ +y+           d+W +G+  y + +++lP++
   CCE27061.1 237 SYCHSFNVCHRDLKPENILITADLQIKIADFGmaALHQTATHQL-ATACgsPHYAAPELLKNK-QYRG-------DRADTWSMGVILYAMLSATLPFD 325
                  566788999********************996336777777777.444445889*****9884.4565.......457******************** PP

  Kinase-like 252 lateeakeew....kfklckkipekvkaLlkkfLqlsqedR 288
                   +      +     ++   +  + + + L++++Lq++ ++R
   CCE27061.1 326 DPDLRLMMAKtkkgQYAMPQGLSPEAEDLIRRMLQVNPDRR 366
                  9887777662233345555555556689*******998877 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.8e-06    0.0062     180     257 ..     194     273 ..     118     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.8e-06
  Haspin_kinase 180 seqqlflvlllkdkGtdLeev.klkswkqalsifw..qivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                    +  +++l+l+  d+G+  + + +     + l if+  q+++ ++    +f+  HRdL+ +niL+ + l++ + d+ ++ l+
     CCE27061.1 194 NRSEIYLILEYIDQGDLFTFInSRGRLPEELAIFFfrQMMSAISYC-HSFNVCHRDLKPENILITADLQIKIADFGMAALH 273
                    4567777788888887777774344677778887644566666554.689*************************999887 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0    0.0001      0.23     168     197 ..     244     271 ..     222     305 .. 0.88
   2 ?    2.2   0.1     0.063   1.4e+02      77     142 ..     367     429 ..     342     468 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
                 EE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 168 llHgDlhpgNllvdpddgrvtGviDfedag 197
                 ++H+Dl+p N+l++ +d ++  + Df++a 
  CCE27061.1 244 VCHRDLKPENILIT-ADLQI-KIADFGMAA 271
                 7*************.66666.799999886 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.063
                 ---EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHH.CCCGCCTC CS
         APH  77 vpgrsllrklsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesata.rllasell 142
                 + +++++r     q++ +l+++g+  ++l ++     ++++ + ++++ ++ql ++ +  ++    +
  CCE27061.1 367 ITIKDIWR-HPLVQKYSYLDDFGDNTGQLPDT---RKGFQYSPVPRADIDPQLLRQLRsMWHMFSEQ 429
                 66778888.4566999****************...89999999999999999999977655444444 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.5e-05     0.033     104     171 ..     209     272 ..     195     280 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
         Kdo 104 dLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarl 171
                 dL +++++  +l+eel    +++   +i+  h+ +v+H+dl + nil+ ++     +i + D+  a+l
  CCE27061.1 209 DLFTFINSRGRLPEELAIFFFRQMMSAISYCHSFNVCHRDLKPENILITADL----QIKIADFGMAAL 272
                 666666665557777777788899999*********************9986....777777766655 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.3e-05      0.21     143     175 ..     240     271 ..     215     282 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.3e-05
                     G-EEEE-S--SGGGEEE.-CTTEEEE--GTT-E CS
  Choline_kinase 143 spvvfcHnDlqegNillnkeekklvlIDFEYag 175
                     ++ + cH Dl ++Nil  + + ++ + DF  a+
      CCE27061.1 240 HSFNVCHRDLKPENILI-TADLQIKIADFGMAA 271
                     34789************.9999******97666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.43
# Mc/sec: 8186.46
//
Query:       CCE27062.1  [L=1122]
Description: related to structural maintenance of chromosome protein (SMC) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-28   98.7   0.3    4.9e-28   98.1   0.3    1.3  1  SMC_N            RecF/RecN/SMC N terminal domain
    8.8e-11   42.7  27.1    8.8e-11   42.7  27.1    5.1  3  AAA_23           AAA domain
    4.9e-06   26.5  26.2    3.3e-05   23.8   1.1    3.9  2  AAA_15           AAA ATPase domain
    1.4e-05   25.1   6.4     0.0021   17.9   0.0    2.9  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0084   16.5   0.9     0.0084   16.5   0.9    7.4  8  Snapin_Pallidin  Snapin/Pallidin
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.025   14.3   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.066   13.5   0.2      0.066   13.5   0.2    6.0  6  BLOC1_2          Biogenesis of lysosome-related organelles co
       0.15   12.5   3.9       0.19   12.2   0.1    3.3  4  AAA              ATPase family associated with various cellul
        2.5    8.2  15.8        2.7    8.1   6.5    5.2  3  Spc42p           Spindle pole body component Spc42p


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.3   2.5e-31   4.9e-28       2     196 ..      80    1075 ..      79    1092 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 2.5e-31
                  EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTT.TCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N    2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakkl.rseklsdlihkskekasvkkaeveitfdnedkklkiekeev 97  
                  + r++++nF +y  ++++    +++++++GpNG GKs+l+ Ai+  LG + + +l r+ ++++ +++       ++a++ei ++ ++++    ++++
  CCE27062.1   80 IVRVTVQNFVTY--EKADFFPGPHLNMVIGPNGTGKSSLVCAICLGLGYSPK-HLgRAGSVKEFVKH-----GKDSATIEIELQRKKQD----RSNY 164 
                  7799********..79999999**************************8666.55499999**9998.....67788888866555554....7778 PP

                  EEEEEEETTSE.EEEEETTEEE-HHHHHHHHHCTT-STT.......................................................... CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................................... RF
       SMC_N   98 sisrrvkrkge.seykingkevtkkevsellesagiske.......................................................... 135 
                  +i++++ r+++ +++++ngke t k++++l++s +i+ +                                                          
  CCE27062.1  165 VIKVQIRREQNnQKWWLNGKETTHKKIQDLMRSLKIQVDnlcqflpqdrvvefaactpidllhetlraaapeemlrwqsqlqelhkdkrelaqgvht 261 
                  88887776655479*********************************************************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27062.1  262 dadtlrnmegrqqnlqadvdrirereeiqqkvqdlrsallmvryqearenhanaknrkreaerslqrlegesgpsleavnqkqryaeqiraarpsme 358 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27062.1  359 ktlksaevatqkvarevsnaadeineivnkaeaekkgfeakkrevalsrskitafqadlknrpadfnaaewnqkiraeehnireleaeqrenntnmd 455 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27062.1  456 alkgraavsqnqerqfqeeianldtqqgqqqnlmrrqypdvaagwewvqanqgefekevfgppmiscsvkdehysdqiqsllqsddfmcftaqtknd 552 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27062.1  553 hkkltnqlyrvmslsvvirtcanplsaykppidraeaagfgldgfaidylagpepvlamlcaekrlhqsgvargehddeaynrlvnsgkvsqwaagr 649 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27062.1  650 qtfivrrrreygpqamttitrsirpgkfwtsqpvdehekqelnrklqeaterrrllreesatliaknneikskissieenierlqseksalqkefqk 746 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27062.1  747 wkslpdkieseerqkamheqaireakknihdlmyerddavlrrarlvnrhkrltdkireahlalvevkiwlleavsdveglkqrnasimqeleaerq 843 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27062.1  844 rvqqaseeaerakkigqrlseevrellssnedkiellnqlaegkspdevemeisaeeaklelihaanpnvireferraeeivrlkrkmesvheklas 940 
                  ************************************************************************************************* PP

                  .......................................................................CS-HHHHHHHHHHHHHHHHCCS--SE CS
                  .......................................................................xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 .......................................................................lLSgGektLvalaLlfAiqkvkpapl 161 
                                                                                           SgGe++++ + +l+A+q++ ++p+
  CCE27062.1  941 ldtklaevmgkwepkleelvskindafaynfeqincrgevrvhkeedfsqwaldvmvsfregeqlqqltahRQSGGERAVSTIFFLMALQSMAQSPF 1037
                  ***********************************************************************99************************ PP

                  EEECTTTTTS-HHHHHHHHHHHH...HHCTTSEEEEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx RF
       SMC_N  162 yllDeidaaLDeknvkkvaellk...eksknaQfivis 196 
                   ++Dei++ +D +n + v e++     +++++Q++ i+
  CCE27062.1 1038 RVVDEINQGMDPRNERMVHERMVeiaCRTHTSQYFLIT 1075
                  ****************9998755132567789999998 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7  27.1   4.4e-14   8.8e-11       1     195 [.      82     296 ..      82     492 .. 0.77
   2 ?   -5.1  17.9         9   1.8e+04     116     185 ..     687     761 ..     614     781 .. 0.49
   3 ?   -2.3  13.2       2.7   5.4e+03      90     190 ..     834     961 ..     789     970 .. 0.64

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 4.4e-14
      AAA_23   1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgrytrsiererelskk 99 
                 +++++nf  +++ ++  ++ l+ ++GpNG+GK+++++Ai+l+L+  ++ l+r    g++k+ v+    gk++a +e+++++k+       +r+  ++k 
  CCE27062.1  82 RVTVQNFVTYEKADFFPGPHLNMVIGPNGTGKSSLVCAICLGLGYSPKHLGRA---GSVKEFVK---HGKDSATIEIELQRKKQ------DRSNYVIKV 168
                 6899****************************************999888884...45666665...45777888888877666......344445555 PP

      AAA_23 100 kgkttkkaklellei.deleqfisellgskkiil.nlilflgqer......................feefelkdkke..................... 153
                 + ++ +++++ +l+  +++ ++i++l+ s ki+  nl++fl+q+r                      +e+++++++++                     
  CCE27062.1 169 QIRREQNNQKWWLNGkETTHKKIQDLMRSLKIQVdNLCQFLPQDRvvefaactpidllhetlraaapEEMLRWQSQLQelhkdkrelaqgvhtdadtlr 267
                 555566666777766355567788888888999989*********999999999999888888877744444444444333333345555555555444 PP

      AAA_23 154 ................rleelekeleeledekkllekleqekekekeleeleeeleei 195
                                 r                             e ee++++ +++
  CCE27062.1 268 nmegrqqnlqadvdriR-----------------------------EREEIQQKVQDL 296
                 44443333333333220.............................333333333332 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 9
      AAA_23 116 eleqfisellgskkiilnlilflgqer.feefelkdkkerleelekeleeledekkllekl..........eqekekekel 185
                 e +q+++++l+      ++  +l +e+ +   ++++ k+++ ++e+ +e l+ ek+ l+k+          +  +++e + 
  CCE27062.1 687 E-KQELNRKLQEAT---ERRRLLREESaTLIAKNNEIKSKISSIEENIERLQSEKSALQKEfqkwkslpdkI--ESEERQK 761
                 2.333333322222...2222233333233444466666777777777777777777777766667766542..2222222 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.7
      AAA_23  90 iererelskkkgkttkkaklellei.deleqfisellgskkiilnlilflgqer............feefel....kdkkerleelekeleeledekkl 171
                 i +e e  ++  ++ ++++++  +i + l ++++ell+s+++ ++l+  l++++            +++  l    ++ ++ ++e+e+  ee+   k++
  CCE27062.1 834 IMQELEAERQRVQQASEEAERAKKIgQRLSEEVRELLSSNEDKIELLNQLAEGKspdevemeisaeEAK--LelihAANPNVIREFERRAEEIVRLKRK 930
                 334444444444444444444444467788888889999999999999999998888877666543222..1235566777999999999999999999 PP

      AAA_23 172 lekleqekekek............eleelee 190
                 +e +++++   +            +leel +
  CCE27062.1 931 MESVHEKLASLDtklaevmgkwepKLEELVS 961
                 9999544333333333444444445555555 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   1.1   1.6e-08   3.3e-05       3     262 ..      80     376 ..      79     493 .. 0.56
   2 ?    1.9  18.1     0.072   1.4e+02      55     363 ..     716    1075 ..     676    1075 .. 0.55

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.6e-08
      AAA_15   3 IkkikikNFRslkdveidlsee..ltvliGkNnsGKSsilealdlFlnnkekkn.......kkvikiekedleifeniseskdikIdvefaekekakey 92 
                 I +++++NF  +++   d+ +   l+ +iG+N++GKSs++ a+ l l  + k +       k          e  ++ + s +i+I+++ ++++ +++ 
  CCE27062.1  80 IVRVTVQNFVTYEK--ADFFPGphLNMVIGPNGTGKSSLVCAICLGLGYSPK-HlgragsvK----------EFVKHGKDSATIEIELQRKKQDRSNYV 165
                 789**********8..66666677*******************888876633.345555441..........555555666666666666333444444 PP

      AAA_15  93 ektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkks........kkelpkekeeklekekeelkidkedlkklikkleeslkke 183
                 +k + ++e++ ++  l+  ++ ++k i+d +  l   ++++++ + +  ++        + ++   ++  +  ++e l   ++ l++l k+ +e  ++ 
  CCE27062.1 166 IKVQIRREQNNQKWWLNG-KETTHKKIQDLMRSL---KIQVDNLCQFLPQDrvvefaacTPIDLLHETLRAAAPEEML-RWQSQLQELHKDKRELAQGV 259
                 444444444444322222.222333333333332...34444554444444444555543333333333333222222.22333333333222222111 PP

      AAA_15 184 e.......elknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekl..................eeelteklkeiqeklkeidkkla 257
                          ++   ++++ +++ i ++ +++++  +  s ll+  +++  e+ ++ k                   ++e   + ++  e ++ +   ++
  CCE27062.1 260 HtdadtlrNMEGRQQNLQADVDRIREREEIQQKVQDLRSALLMVRYQEARENHANAKNrkreaerslqrlegesgpSLEAVNQKQRYAEQIRAARPSME 358
                 133344445666667777777777777777777777777777777777777655555466666666666666666633333333333333333333333 PP

      AAA_15 258 eelk.............k 262
                 + lk             +
  CCE27062.1 359 KTLKsaevatqkvarevS 376
                 333333333333332331 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.072
      AAA_15   55 kkvikiekedleifeniseskdikIdvef......aekekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkks.. 143 
                  +++ik + +++e++ ++  s +  +++ef             + ++++++++++ ++ + + k++ ++ +++  +  l   +l +  + + +k    
  CCE27062.1  716 NNEIKSKISSIEENIERLQSEKSALQKEFqkwkslP------DKIESEERQKAMHEQAIREAKKNIHDLMYERDDAVLRRARLVNRHKRLTDKIRea 806 
                  455555666666666666666666666662222220......2222222222222222222222222222222222222222222222222222233 PP

      AAA_15  144 ...........................kkelpkekeeklekekeelkidkedlkklikkleeslkkee............elknvlksaiiklllis 201 
                                             +++  + ++   ++ +ee +  k++ ++l+++ +e l+++e            +       + ++++   
  CCE27062.1  807 hlalvevkiwlleavsdveglkqrnasIMQELEAERQRVQQASEEAERAKKIGQRLSEEVRELLSSNEdkiellnqlaegK-------SPDEVEMEI 896 
                  444444444555555555555555555444444445555555555555566666666666666666666665322222220.......334444444 PP

      AAA_15  202 akRnvsdedsekkssllgklkekileealqekl.eeelteklkeiqeklkeidkklaeelkkilkkkidkik.kfnykgkkneeieik......... 287 
                  +  +++ e+    +++ ++ +e+  ee+++ k   e++ ekl ++++kl e  +k + +l++ + k+ d +  +f+  +   e +  k         
  CCE27062.1  897 SAEEAKLELIHAANPNVIREFERRAEEIVRLKRkMESVHEKLASLDTKLAEVMGKWEPKLEELVSKINDAFAyNFEQINCRGEVRVHKeedfsqwal 993 
                  444444444444444444444444444443333544556666666666666666666666666666666665444444444444444488888999* PP

      AAA_15  288 .........ddeelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnkt.QviitT 363 
                           ++ ++  + + sG  r+++ i+++  ++      +++ +++++E+     p + +++++ + e+a+ ++t Q ++ T
  CCE27062.1  994 dvmvsfregEQLQQLTAHRQSGGERAVSTIFFLMALQSM----AQSPFRVVDEINQGMDPRNERMVHERMVEIACRTHTsQYFLIT 1075
                  *******99777777777778888999999999999999....899*****************************99998988755 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-06    0.0021       1     164 [.     102     258 ..     102     343 .. 0.69
   2 ?    3.7   6.8     0.023        46     219     296 ..     909    1075 ..     706    1079 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv..eeklssvetllesg 97 
                 ln++iGpNg+GKS+L  a+ l         gl++++   g  +++  +   + ++  +e+e+  + ++ ++y   +++ r+q   + +l  +et++++ 
  CCE27062.1 102 LNMVIGPNGTGKSSLVCAICL---------GLGYSPKHLGRAGSVKEFVKHGKDSATIEIELQRKKQDRSNYVIKVQIRREQNnqKWWLNGKETTHKKI 191
                 79*****************44.........455555555555666666666666666666666666677777777777777779777777777777777 PP

      AAA_21  98 llldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrke 164
                   l ++ +++ d+  ++    r++++    +  ++ e  +   ++  ++  s++ +l +++++l   
  CCE27062.1 192 QDLMRSLKIQVDNLCQFLPQDRVVEFAACTPIDLLHETLRAAAPEEMLRWQSQLQELHKDKRELAQG 258
                 7777777777777777777777776666666666666666666666666666666665555555555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.023
      AAA_21  219 r......................................................................................gvvflengdg 229 
                  +                                                                                       v f e ++ 
  CCE27062.1  909 AnpnvireferraeeivrlkrkmesvheklasldtklaevmgkwepkleelvskindafaynfeqincrgevrvhkeedfsqwaldvMVSFREGEQL 1005
                  0444444444444444444444444444444444444444666666666666677777888888888888888888888889999989999999*** PP

      AAA_21  230 qelparelSdGtkrll..alltallralkkgsllliDEpEngLHPkll....rrllellkelsrngaQviltT 296 
                  q+l+a+  S G + +   ++l al + +++ ++ ++DE+  g++P+      +r +e+  ++++  +Q +l T
  CCE27062.1 1006 QQLTAHRQSGGERAVStiFFLMALQSMAQS-PFRVVDEINQGMDPRNErmvhERMVEIACRTHT--SQYFLIT 1075
                  ***************877999999999999.**************5542234444455566665..8887776 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   3.7     0.018        36      17      77 ..     240     298 ..     224     306 .. 0.73
   2 ?   -2.3   0.3       3.2   6.3e+03      63      78 ..     348     363 ..     332     394 .. 0.45
   3 ?   -1.6   3.5       1.9   3.7e+03      13      50 ..     431     467 ..     427     491 .. 0.69
   4 ?    0.2   0.1      0.52     1e+03      41      77 ..     531     568 ..     527     574 .. 0.81
   5 ?    0.7   4.4      0.37   7.3e+02      38      85 ..     690     736 ..     685     747 .. 0.59
   6 ?   -2.3   0.1       3.1   6.1e+03      27      70 ..     758     797 ..     752     814 .. 0.60
   7 ?   -0.4   2.4      0.78   1.5e+03      25      83 ..     827     863 ..     813     883 .. 0.59
   8 !   16.5   0.9   4.2e-06    0.0084      31      87 ..     891     946 ..     886     949 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.018
  Snapin_Pallidin  17 eldeklkelrqsQeeLleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslne 77 
                      + +++l+el++  +eL++ +++ ++ L+++e  q+ ++ +d+++ +++  +i+++++ l +
       CCE27062.1 240 RWQSQLQELHKDKRELAQGVHTDADTLRNMEGRQQ-NLQADVDRIRER-EEIQQKVQDLRS 298
                      67899***********************9999999.334444443333.456666666655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.2
  Snapin_Pallidin  63 kKLvnikkrmsslner 78 
                      + +++++  m++  ++
       CCE27062.1 348 EQIRAARPSMEKTLKS 363
                      3333333333322222 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.9
  Snapin_Pallidin  13 pkldeldeklkelrqsQeeLleqldrlnekLkeleeaq 50 
                       k+++ +++++el+++Q+e + ++d l+ + + ++++q
       CCE27062.1 431 QKIRAEEHNIRELEAEQRENNTNMDALKGRAA-VSQNQ 467
                      57788889999999999999999999987655.33322 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.52
  Snapin_Pallidin  41 ekLkeleeaqe.aevlpdlkeyakKLvnikkrmsslne 77 
                      +++++l + ++     +++k+ +kKL+n   r++sl+ 
       CCE27062.1 531 DQIQSLLQSDDfMCFTAQTKNDHKKLTNQLYRVMSLSV 568
                      6777778888877788899999******9999999975 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.37
  Snapin_Pallidin  38 rlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlqklkkR 85 
                      +ln+kL+e+ e     + ++  + ++K ++ik ++ss++e +++l+  
       CCE27062.1 690 ELNRKLQEATERRR-LLREESATLIAKNNEIKSKISSIEENIERLQSE 736
                      55666666666555.444555555566666666666666666666643 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 3.1
  Snapin_Pallidin  27 qsQeeLleq.ldrlnekLkeleeaqeaevlpdlkeyakKLvnikk 70 
                      + Q++++eq +++ ++++++l  + +     d+   +++Lvn  k
       CCE27062.1 758 ERQKAMHEQaIREAKKNIHDLMYERD-----DAVLRRARLVNRHK 797
                      56677766524444444555555555.....44444455555444 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 0.78
  Snapin_Pallidin  25 lrqsQeeLleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlqklk 83 
                      l+q      ++l+ +++++++++e                      + ++ +++ q+l 
       CCE27062.1 827 LKQRNASIMQELEAERQRVQQASE----------------------EAERAKKIGQRLS 863
                      444444444455555555554444......................4444444444444 PP

  == domain 8  score: 16.5 bits;  conditional E-value: 4.2e-06
  Snapin_Pallidin  31 eLleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlqklkkRae 87 
                      e+  +++ + +kL+ +  a++ +v+ ++++ a+ +v++k++m+s++e+l +l  ++ 
       CCE27062.1 891 EVEMEISAEEAKLELIHAANP-NVIREFERRAEEIVRLKRKMESVHEKLASLDTKLA 946
                      6777999******99999999.9****************************999886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.2e-05     0.025       3      42 ..      82     120 ..      80     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
      AAA_29   3 rlqlvNWgtfdghtieidlkgatlltGpsGsGKSTllDAi 42 
                 r+ + N  t+++ ++   ++   +++Gp+G+GKS+l+ Ai
  CCE27062.1  82 RVTVQNFVTYEKADFFPGPH-LNMVIGPNGTGKSSLVCAI 120
                 77888888888877766666.599************9887 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.6      0.39   7.8e+02      30      77 ..     260     296 ..     241     300 .. 0.45
   2 ?    0.9   0.9      0.29   5.8e+02      27      67 ..     370     410 ..     335     419 .. 0.54
   3 ?   -3.1   0.9         5   9.9e+03      42      57 ..     446     461 ..     427     485 .. 0.47
   4 ?    8.6   4.9    0.0011       2.2      11      75 ..     691     755 ..     687     760 .. 0.91
   5 ?    1.5   2.0      0.18   3.7e+02      19      67 ..     821     869 ..     816     885 .. 0.76
   6 ?   13.5   0.2   3.3e-05     0.066      11      67 ..     892     948 ..     887     968 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.39
     BLOC1_2  30 eaasekykklkdvaaslekkleklnekyeelqpylqqi...dqiekqvteL 77 
                 ++ +              ++l +++ ++++lq  +++i   ++i+++v++L
  CCE27062.1 260 HTDA--------------DTLRNMEGRQQNLQADVDRIrerEEIQQKVQDL 296
                 2222..............333444444455555555552222344444444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.29
     BLOC1_2  27 klNeaasekykklkdvaaslekkleklnekyeelqpylqqi 67 
                 k+ +++s+  ++++++++++e++ +  ++k+ e++   ++i
  CCE27062.1 370 KVAREVSNAADEINEIVNKAEAEKKGFEAKKREVALSRSKI 410
                 33333344444444444444444444444444444444444 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5
     BLOC1_2  42 vaaslekkleklneky 57 
                 +  + ++++++l+ + 
  CCE27062.1 446 EQRENNTNMDALKGRA 461
                 3333333333333332 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0011
     BLOC1_2  11 leaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvt 75 
                 l+ +l+ ++e  +lL +   + ++k +++k++++s+e+++e+l++++ +lq+ +q+ + + ++++
  CCE27062.1 691 LNRKLQEATERRRLLREESATLIAKNNEIKSKISSIEENIERLQSEKSALQKEFQKWKSLPDKIE 755
                 567889999999*******************************************9988888876 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.18
     BLOC1_2  19 vedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqi 67 
                 v+d++ L++ N + +++ ++ +++++++++++e+ ++  + l++ ++++
  CCE27062.1 821 VSDVEGLKQRNASIMQELEAERQRVQQASEEAERAKKIGQRLSEEVREL 869
                 6788889999999999999999999999999999999888888877765 PP

  == domain 6  score: 13.5 bits;  conditional E-value: 3.3e-05
     BLOC1_2  11 leaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqi 67 
                 +e e++a  ++++l+++ N +++++++  ++++  l++k+e + ek ++l+ +l ++
  CCE27062.1 892 VEMEISAEEAKLELIHAANPNVIREFERRAEEIVRLKRKMESVHEKLASLDTKLAEV 948
                 67789999999**********************************999999998876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.5e-05      0.19       2     120 ..     104     231 ..     103     238 .. 0.63
   2 ?   -3.7   0.1       7.7   1.5e+04      40      56 ..     376     392 ..     355     400 .. 0.58
   3 ?   -2.5   0.0       3.3   6.5e+03      67      94 ..     533     565 ..     531     568 .. 0.74
   4 ?   -2.8   0.0       4.1   8.2e+03      87     100 ..    1041    1057 ..    1000    1090 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.5e-05
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHHH.....TTCCCHHHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakeka..kpsilfiDEidalaksr.....sgseseeeervvnqLltel 93 
                 +++Gp GtGK++l+ a++  lg +   +  +  ++++v++++++    ++  ++k+  +  ++ +    + ++++     +++++++ ++++  L  ++
  CCE27062.1 104 MVIGPNGTGKSSLVCAICLGLGYSPKHLGRAGSVKEFVKHGKDSATIEIELQRKKQdrSNYVIKVQIRREQNNQKwwlngKETTHKKIQDLMRSLKIQV 202
                 589*****************9988888887777777776665555444444444443344666555444443333665444445555555555555666 PP

                 HHTTTS..SSTEEEEEEESSGGGSTHHHH CS
         AAA  94 dgvkkk..eskvivigatnrpdkldpall 120
                 d++ +   +++v+  +a++ +d l + l+
  CCE27062.1 203 DNLCQFlpQDRVVEFAACTPIDLLHETLR 231
                 65555566666666666666666666665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.7
                 THHHHHHHHHHHHHHHT CS
         AAA  40 gesekkirelfkeakek 56 
                 ++++++i+e++++a+++
  CCE27062.1 376 SNAADEINEIVNKAEAE 392
                 44444455555544433 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.3
                 GGGHHHHH.....TTCCCHHHHHHHHHHHHHHH CS
         AAA  67 idalaksr.....sgseseeeervvnqLlteld 94 
                 i +l +s+     + +++++++++ nqL+++++
  CCE27062.1 533 IQSLLQSDdfmcfTAQTKNDHKKLTNQLYRVMS 565
                 55566666666656678899999******9985 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 4.1
                  HHHHHHHHHTTTS...S CS
         AAA   87 nqLlteldgvkkk...e 100 
                  +++ + +d  +++   e
  CCE27062.1 1041 DEINQGMDPRNERmvhE 1057
                  33333333333333321 PP

>> Spc42p  Spindle pole body component Spc42p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.92   1.8e+03      40      49 ..     690     699 ..     688     709 .. 0.73
   2 ?    8.1   6.5    0.0013       2.7       2      69 ..     711     778 ..     710     782 .. 0.90
   3 ?    1.3   0.1      0.18   3.6e+02      11      36 ..     914     939 ..     905     972 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.92
      Spc42p  40 elnkKLedql 49 
                 eln+KL++  
  CCE27062.1 690 ELNRKLQEAT 699
                 8999999763 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0013
      Spc42p   2 klikQNKeLnkkldekqeEierLnvlvgslRaKLiKYtelnkKLedqlenlersssslekktedandy 69 
                  li  N e++ k+ + +e ierL++    l     K+  l  K+e+++++ + ++++  +++++  d 
  CCE27062.1 711 TLIAKNNEIKSKISSIEENIERLQSEKSALQKEFQKWKSLPDKIESEERQKAMHEQAIREAKKNIHDL 778
                 599********************************************999999999888877776665 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.18
      Spc42p  11 nkkldekqeEierLnvlvgslRaKLi 36 
                 + + + + eEi rL+  ++s   KL 
  CCE27062.1 914 IREFERRAEEIVRLKRKMESVHEKLA 939
                 566778899******99999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2387  (0.133136); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                       136  (0.00758548); expected 17.9 (0.001)
Passed Fwd filter:                        74  (0.00412739); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.89u 0.31s 00:00:02.19 Elapsed: 00:00:00.57
# Mc/sec: 5960.94
//
Query:       CCE27063.1  [L=1523]
Description: related to cell polarity protein tea1p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-29  100.4   3.3    5.2e-07   29.5   0.1    6.5  6  Kelch_5       Kelch motif
    1.1e-28   98.9   6.9    9.2e-06   25.6   0.8    6.7  6  Kelch_4       Galactose oxidase, central domain
    6.4e-26   89.7   6.3    3.4e-09   36.7   0.6    6.6  6  Kelch_6       Kelch motif
    7.7e-26   89.4   6.4    2.1e-10   40.0   0.6    6.1  6  Kelch_1       Kelch motif
    2.3e-24   85.1  17.8      4e-06   27.0   0.2    6.7  7  Kelch_3       Galactose oxidase, central domain
    5.3e-20   70.5   7.2      3e-08   33.3   0.4    6.6  6  Kelch_2       Kelch motif
     0.0043   16.7  15.2     0.0043   16.7  15.2    4.8  6  Filament      Intermediate filament protein
  ------ inclusion threshold ------
        4.1    7.3  15.2       0.49   10.2   0.7    3.7  3  betaPIX_CC    betaPIX coiled coil
        4.5    6.3   7.5         10    5.2   7.5    1.5  1  ALS2CR11      Amyotrophic lateral sclerosis 2 candidate 11


Domain annotation for each model (and alignments):
>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.6e-06     0.015       1      35 [.     115     151 ..     115     153 .. 0.74
   2 ?    3.4   0.0      0.04        79       2      22 ..     171     191 ..     170     212 .. 0.88
   3 !   17.5   0.0   1.6e-06    0.0031       2      33 ..     225     254 ..     225     262 .. 0.81
   4 !   29.5   0.1   2.6e-10   5.2e-07       2      39 ..     283     318 ..     282     319 .. 0.95
   5 !   21.3   0.0   9.7e-08   0.00019       1      30 [.     332     358 ..     332     363 .. 0.89
   6 !    7.7   0.0    0.0018       3.5       2      22 ..     384     404 ..     383     417 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.6e-06
     Kelch_5   1 iPppRaghcavtv.s..ekiYvyGGkvgrdgsvs..ddvy 35 
                 +P pR+g+++ +v s  + iY++GG +   +s++  +d++
  CCE27063.1 115 TPFPRYGAAVNAVaSkeGDIYMMGGLI---NSSTvkGDLW 151
                 69********988434577*******9...4433346666 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.04
     Kelch_5   2 PppRaghcavtvsekiYvyGG 22 
                 P pR gh++  v++  +vyGG
  CCE27063.1 171 PGPRVGHASLLVGNAFIVYGG 191
                 9*************9999*99 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 1.6e-06
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvs.dd 33 
                 P++R+gh   ++++kiY++GG v   ++++ +d
  CCE27063.1 225 PSGRYGHTLNILGSKIYIFGGQV---EGLFmND 254
                 999******************99...3333355 PP

  == domain 4  score: 29.5 bits;  conditional E-value: 2.6e-10
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdl 39 
                 Pp+R++h ++t+++k+Y++GG +g   + ++dv+ +d+
  CCE27063.1 283 PPARTNHTVITYNDKLYLFGGTNG--VEWFNDVWCYDP 318
                 ***********************6..********9996 PP

  == domain 5  score: 21.3 bits;  conditional E-value: 9.7e-08
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvgrdgsv 30 
                 iPp+R gh+a++v++ +Yv+GG++   +++
  CCE27063.1 332 IPPSREGHAAAVVDDVMYVFGGRT---EEG 358
                 7*********************99...554 PP

  == domain 6  score: 7.7 bits;  conditional E-value: 0.0018
     Kelch_5   2 PppRaghcavtvsekiYvyGG 22 
                 P+pR+gh++ tv+ ++ v GG
  CCE27063.1 384 PSPRSGHSMTTVGKSVVVLGG 404
                 9*****************999 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0014       2.8       1      33 [.     118     152 ..     118     153 .. 0.88
   2 !   13.3   0.0   3.1e-05     0.061       1      45 [.     173     222 ..     173     226 .. 0.83
   3 !   16.3   0.0   3.6e-06    0.0072       1      39 [.     227     263 ..     227     284 .. 0.84
   4 !   25.6   0.8   4.6e-09   9.2e-06       1      44 [.     285     326 ..     285     337 .. 0.83
   5 !   23.4   0.0   2.3e-08   4.5e-05       4      49 .]     338     385 ..     335     385 .. 0.88
   6 !    9.7   0.0   0.00043      0.86       1      27 [.     386     411 ..     386     423 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0014
     Kelch_4   1 pRaghsatsi..pdgtiylfGGrgedgtllndlyl 33 
                 pR g+++ ++    g+iy+ GG  +  t+ +dl+l
  CCE27063.1 118 PRYGAAVNAVasKEGDIYMMGGLINSSTVKGDLWL 152
                 78899988885455*******************97 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.1e-05
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedg..tllndl.ylldlstntWrrl...g 45 
                 pR+gh++  ++ + ++++GG +       l+++ yll++st++W+r    g
  CCE27063.1 173 PRVGHASLLVG-NAFIVYGGDTKIEeaDELDETlYLLNTSTRHWSRAlpaG 222
                 8*********7.67777***99998887777777***********986554 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 3.6e-06
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstn 39 
                 +R gh++  ++  +iy+fGG+ e g ++ndl ++dl + 
  CCE27063.1 227 GRYGHTLNILG-SKIYIFGGQVE-GLFMNDLSAFDLNQL 263
                 599*******7.7**********.58*********9765 PP

  == domain 4  score: 25.6 bits;  conditional E-value: 4.6e-09
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstntWrrl 44 
                 +R +h+++   ++++ylfGG ++  + +nd++ +d + n+W++l
  CCE27063.1 285 ARTNHTVITY-NDKLYLFGGTNGV-EWFNDVWCYDPAVNSWSQL 326
                 6888885544.69**********9.9****************98 PP

  == domain 5  score: 23.4 bits;  conditional E-value: 2.3e-08
     Kelch_4   4 ghsatsipdgtiylfGGrgedgtllndlylldlstntW...rrlgslPs 49 
                 gh+a ++ d+  y+fGGr+e+gt l+dl ++ +s+++W   + +g++Ps
  CCE27063.1 338 GHAAAVV-DDVMYVFGGRTEEGTDLGDLAAFRISSRRWytfQNMGPSPS 385
                 7888889.69****************************77777788886 PP

  == domain 6  score: 9.7 bits;  conditional E-value: 0.00043
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtl 27 
                 pR ghs+t ++  ++++ GG+ + +t+
  CCE27063.1 386 PRSGHSMTTVG-KSVVVLGGEPSSATT 411
                 9*********7.8********998654 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0026       5.1       5      31 ..     125     151 ..     121     153 .. 0.87
   2 ?    4.9   0.0     0.018        36       1      41 [.     173     216 ..     173     221 .. 0.88
   3 !   13.9   0.0   2.4e-05     0.049       2      35 ..     228     260 ..     228     265 .. 0.89
   4 !   36.7   0.6   1.7e-12   3.4e-09       1      43 [.     285     326 ..     285     333 .. 0.95
   5 !   14.6   0.0   1.5e-05     0.029       2      45 ..     336     379 ..     335     383 .. 0.91
   6 !    8.2   0.0    0.0016       3.2       1      20 [.     386     405 ..     386     413 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0026
     Kelch_6   5 hslvsvggkiYifGGytdsspylnkvw 31 
                 ++++s  g iY++GG+ +ss+   ++w
  CCE27063.1 125 NAVASKEGDIYMMGGLINSSTVKGDLW 151
                 6789999***********999888888 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.018
     Kelch_6   1 praghslvsvggkiYifGGytds...spylnkvwvydpetksWe 41 
                 pr+gh++ +vg+ + ++GG t     ++    +++++ +t+ W+
  CCE27063.1 173 PRVGHASLLVGNAFIVYGGDTKIeeaDELDETLYLLNTSTRHWS 216
                 699*****************999999888888888888888887 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 2.4e-05
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydp 35 
                 r+gh+l + g+kiYifGG++  + + n++  +d+
  CCE27063.1 228 RYGHTLNILGSKIYIFGGQVE-GLFMNDLSAFDL 260
                 789*****************9.888999888886 PP

  == domain 4  score: 36.7 bits;  conditional E-value: 1.7e-12
     Kelch_6   1 praghslvsvggkiYifGGytdsspylnkvwvydpetksWeql 43 
                 +r+ h+++++++k+Y+fGG ++  +++n+vw+ydp  +sW+ql
  CCE27063.1 285 ARTNHTVITYNDKLYLFGGTNG-VEWFNDVWCYDPAVNSWSQL 326
                 599*******************.8*****************97 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 1.5e-05
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydpetksWeqlpp 45 
                 r gh++++v++  Y+fGG+t  ++ l ++  +++++++W + + 
  CCE27063.1 336 REGHAAAVVDDVMYVFGGRTEEGTDLGDLAAFRISSRRWYTFQN 379
                 55899******99**************************87665 PP

  == domain 6  score: 8.2 bits;  conditional E-value: 0.0016
     Kelch_6   1 praghslvsvggkiYifGGy 20 
                 pr ghs+++vg +++++GG 
  CCE27063.1 386 PRSGHSMTTVGKSVVVLGGE 405
                 699****************6 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2   2.4e+03       6      22 ..     126     142 ..     125     147 .. 0.80
   2 !    6.2   0.0    0.0039       7.9       1      41 [.     173     217 ..     173     218 .. 0.95
   3 !   16.9   0.0   1.8e-06    0.0035       2      34 ..     228     260 ..     227     264 .. 0.94
   4 !   40.0   0.6     1e-13   2.1e-10       1      42 [.     285     326 ..     285     327 .. 0.97
   5 !   17.7   0.0   9.5e-07    0.0019       2      45 ..     336     380 ..     335     381 .. 0.81
   6 !    6.0   0.0    0.0044       8.9       1      19 [.     386     404 ..     386     405 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
                 EEEEETTEEEEEEEBCS CS
     Kelch_1   6 gavvvggkiYviGGsdg 22 
                 ++++  g iY +GG  +
  CCE27063.1 126 AVASKEGDIYMMGGLIN 142
                 6788899*******876 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0039
                 BBBSEEEEEETTEEEEEEEBCS....SSBEEEEEEEETTTTEEEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdg....gnalssvevyDpetntWre 41 
                 +r g+++  vg+   v GG        +   +++ +++ t  W++
  CCE27063.1 173 PRVGHASLLVGNAFIVYGGDTKieeaDELDETLYLLNTSTRHWSR 217
                 79*****************************************98 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 1.8e-06
                 BBSEEEEEETTEEEEEEEBCSSSBEEEEEEEET CS
     Kelch_1   2 ragagavvvggkiYviGGsdggnalssvevyDp 34 
                 r+g++   +g kiY++GG+ +g +++++ ++D+
  CCE27063.1 228 RYGHTLNILGSKIYIFGGQVEGLFMNDLSAFDL 260
                 99***************************9997 PP

  == domain 4  score: 40.0 bits;  conditional E-value: 1e-13
                 BBBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEEEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdggnalssvevyDpetntWrel 42 
                 ar+++++ + ++k+Y +GG +g +  ++v++yDp  n+W++l
  CCE27063.1 285 ARTNHTVITYNDKLYLFGGTNGVEWFNDVWCYDPAVNSWSQL 326
                 69*************************************986 PP

  == domain 5  score: 17.7 bits;  conditional E-value: 9.5e-07
                 BBSEEEEEETTEEEEEEEBCS.SSBEEEEEEEETTTTEEEEECCC CS
     Kelch_1   2 ragagavvvggkiYviGGsdg.gnalssvevyDpetntWrelpsM 45 
                 r g++a+vv++ +Yv+GG+ + g+ l ++ ++   +  W    +M
  CCE27063.1 336 REGHAAAVVDDVMYVFGGRTEeGTDLGDLAAFRISSRRWYTFQNM 380
                 779****************99888888777777777777766666 PP

  == domain 6  score: 6.0 bits;  conditional E-value: 0.0044
                 BBBSEEEEEETTEEEEEEE CS
     Kelch_1   1 aragagavvvggkiYviGG 19 
                 +r+g+++++vg  + v+GG
  CCE27063.1 386 PRSGHSMTTVGKSVVVLGG 404
                 7*****************9 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       2.1   4.2e+03      34      48 ..     111     126 ..      94     127 .. 0.69
   2 !   10.3   0.0   0.00034      0.68       4      47 ..     134     180 ..     131     182 .. 0.85
   3 !   13.5   0.1   3.3e-05     0.066       1      46 [.     183     233 ..     183     235 .. 0.87
   4 !   17.6   0.0   1.8e-06    0.0035       1      46 [.     237     291 ..     237     294 .. 0.78
   5 !   25.1   0.2   7.6e-09   1.5e-05       1      48 [.     295     343 ..     295     344 .. 0.95
   6 !   27.0   0.2     2e-09     4e-06       2      48 ..     346     394 ..     345     395 .. 0.92
   7 ?   -2.8   0.1       4.2   8.4e+03      30      47 ..     517     539 ..     512     540 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.1
     Kelch_3  34 iaslpp.aRaghaata 48 
                 ++s++p +R+g+a+ a
  CCE27063.1 111 SPSPTPfPRYGAAVNA 126
                 2444448*****9976 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00034
     Kelch_3   4 lyifGGlgddgqdrlndvyvydldtn....tWaeiaslppaRaghaat 47 
                 +y  GGl  ++ ++ +d++++  + n      a++a+ p++R+gha+ 
  CCE27063.1 134 IYMMGGLI-NSSTVKGDLWLVEAGGNlacyPLATTAEGPGPRVGHASL 180
                 66666666.8899999*****99999999999*************985 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 3.3e-05
     Kelch_3   1 gdrlyifGGlgd..dgqdrlndvyvydldtntWaei...aslppaRaghaa 46 
                 g+ + ++GG +      + + ++y+++++t  W +    ++ p++R+gh++
  CCE27063.1 183 GNAFIVYGGDTKieEADELDETLYLLNTSTRHWSRAlpaGTRPSGRYGHTL 233
                 68777788877798889999**************8889999********97 PP

  == domain 4  score: 17.6 bits;  conditional E-value: 1.8e-06
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydl...dtn..tWaei.......aslppaRaghaa 46 
                 g ++yifGG     + + nd+ ++dl   +++   W+ i       ++ ppaR++h++
  CCE27063.1 237 GSKIYIFGGQV--EGLFMNDLSAFDLnqlQSPnyMWE-IllnndpsPNAPPARTNHTV 291
                 679********..89999******9966655544555.33566667999*******97 PP

  == domain 5  score: 25.1 bits;  conditional E-value: 7.6e-09
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaata 48 
                 +d+ly+fGG +  g +  ndv+ yd++ n+W ++   +  pp R ghaa++
  CCE27063.1 295 NDKLYLFGGTN--GVEWFNDVWCYDPAVNSWSQLdciGYIPPSREGHAAAV 343
                 799********..*********************999999********987 PP

  == domain 6  score: 27.0 bits;  conditional E-value: 2e-09
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtn...tWaeiaslppaRaghaata 48 
                 d +y+fGG++   ++ l+d+ ++ +++    t+++ +++p++R+gh++t+
  CCE27063.1 346 DVMYVFGGRT-EEGTDLGDLAAFRISSRrwyTFQNMGPSPSPRSGHSMTT 394
                 88********.68************99988899999************96 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 4.2
     Kelch_3  30 tWaei..aslpp...aRaghaat 47 
                 t+ +i  a  pp   +Rag +a+
  CCE27063.1 517 TFSSIppAKYPPsklPRAGSSAS 539
                 5666644334455779*999986 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.09   1.8e+02      10      33 ..     127     151 ..     118     158 .. 0.73
   2 ?    4.1   0.0     0.026        51       1      19 [.     173     191 ..     173     218 .. 0.80
   3 !    9.5   0.0   0.00051         1       1      20 [.     227     246 ..     227     270 .. 0.81
   4 !   33.3   0.4   1.5e-11     3e-08       2      49 .]     286     330 ..     285     330 .. 0.95
   5 !   13.3   0.0   3.1e-05     0.061       4      42 ..     338     374 ..     335     381 .. 0.71
   6 !    5.7   0.1    0.0076        15       1      29 [.     386     410 ..     386     417 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.09
     Kelch_2  10 p...ggkiyvvGGahtdnpnlsssdvh 33 
                 +   +g iy++GG    n++ +  d++
  CCE27063.1 127 VaskEGDIYMMGGL--INSSTVKGDLW 151
                 344589********..77777777766 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.026
     Kelch_2   1 rrgghsssvpggkiyvvGG 19 
                 +r+gh+s  +g+  +v+GG
  CCE27063.1 173 PRVGHASLLVGNAFIVYGG 191
                 79****************9 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00051
     Kelch_2   1 rrgghsssvpggkiyvvGGa 20 
                 +r+gh+   +g+kiy++GG 
  CCE27063.1 227 GRYGHTLNILGSKIYIFGGQ 246
                 69*****************6 PP

  == domain 4  score: 33.3 bits;  conditional E-value: 1.5e-11
     Kelch_2   2 rgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWeevtplg 49 
                 r  h++ + ++k+y++GG    n++++++dv+++d+  ++W+ + ++g
  CCE27063.1 286 RTNHTVITYNDKLYLFGGT---NGVEWFNDVWCYDPAVNSWSQLDCIG 330
                 778****************...********************999986 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 3.1e-05
     Kelch_2   4 ghsssvpggkiyvvGGa...htdnpnlsssdvhvldlekhvW 42 
                 gh+++v+++ +yv+GG+   +td+++l       ++ ++++W
  CCE27063.1 338 GHAAAVVDDVMYVFGGRteeGTDLGDL-----AAFRISSRRW 374
                 9****************5555555554.....4444455555 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.0076
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlss 29 
                 +r+ghs++++g  ++v GG     p++++
  CCE27063.1 386 PRSGHSMTTVGKSVVVLGGE----PSSAT 410
                 79*****************8....55544 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   5.1       0.1     2e+02      54     139 ..     749     850 ..     721     863 .. 0.69
   2 ?    3.7   5.5      0.02        39      78     137 ..     831     890 ..     816     899 .. 0.88
   3 ?    2.2  28.0     0.053   1.1e+02      35     294 ..     866    1107 ..     851    1117 .. 0.73
   4 !   16.7  15.2   2.1e-06    0.0043     166     282 ..    1164    1283 ..    1151    1287 .. 0.86
   5 ?    3.4   2.9     0.024        48     212     269 ..    1273    1330 ..    1272    1342 .. 0.88
   6 ?   -1.4   0.0       0.7   1.4e+03     261     290 ..    1407    1436 ..    1397    1446 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.1
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  54 keleelrkqldeltkerarlqleldnlreel....edlrkkyeke............lnkreevEaelkalrkdldeatlarvdLekkvesLkeelafl 136
                  el+++++ +d+++   a+  +e ++ r+++       ++k++ +             ++r+e  +  ++l ++l  a   + dL ++ve+Lk+ela  
  CCE27063.1 749 MELANVQSSVDKQAVLAAKQIAEAEKQRDAAiqevVYAKAKLAAQtgggslastpqlDSERDEPGERSHDLGRKLAMALHLQKDLKSQVEQLKNELAAE 847
                 45555555555555544444444444443331000333444444488888888888778888888888999999999999999*************999 PP

                 XXX CS
    Filament 137 kkv 139
                 ++ 
  CCE27063.1 848 RNA 850
                 875 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.02
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  78 dnlreeledlrkkyekelnkreevEaelkalrkdldeatlarvdLekkvesLkeelaflk 137
                 ++l+ ++e+l++ ++ e n r+ ++++ +a ++ l ++   + +  ++v  Lk el++++
  CCE27063.1 831 KDLKSQVEQLKNELAAERNARQLADDTTAAAQQRLTDLETYKQQTSTEVGRLKAELHLVQ 890
                 5689999****************************************9999999998765 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.053
                  XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament   35 eeleekksaevsklkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyekelnkreevEaelkalrkdldeatlarvdLekkvesLke 131 
                  ++le  k+++++      ++el+ +++   e++   a +++ l+ ++ e  ++  ky++ ++  ++ ++++ +lr  +++ + ar+ Lekk+e    
  CCE27063.1  866 TDLETYKQQTST-EVGRLKAELHLVQRDAREQSVMSAEAVAALELMKVERGEFEVKYKEAVGAFKNHDETFDSLRSAVNASQDARSHLEKKLE---- 957 
                  444444333333.22334566666666667777777788888888999999***************************************975.... PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-H.HHHHHHHHHHHH CS
    Filament  132 elaflkkvheeEvkelqkqvseqvlvevdaarkldLteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsak.eeitelrrqiqs 227 
                  e +  +   eeE+++l+ +         d ar+ +L++  + +r+  eelaek  +ea    ++ l+ l + ++++ +++ +   e +  l++qi +
  CCE27063.1  958 EERAARDTIEEELNKLRMEF--------D-ARTSELASSTQRLRD-AEELAEKHANEARTHRHALLSGLDKLSTRELADAGKGDgERVLVLQKQIAA 1044
                  457789999*****999888........4.677778777777774.577888888888888888888888877777766665541557777888888 PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  228 leieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqeLLdvKla 294 
                   +  ++++++ ++   ++l+ +eer++  le++qe+ s   +e   ir+++++ lre q+L+   + 
  CCE27063.1 1045 SSELVKKYQHDANDAADKLRSAEERIAG-LEQYQEQSS---REGVAIRRQLQAALRETQSLMAGHTD 1107
                  7777788888888888888888888754.666766544...56667778888888888888765555 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 2.1e-06
                  XXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  166 dLteilkeiraqyee...laeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaelek 259 
                  dL++ l+   a +ee   + e +++++e  y++kle+l+    +  +  +sa++ +++l+ qi + e +   lk +++ le+q   l++r+ea +++
  CCE27063.1 1164 DLETQLAGATAAHEEsrqQFEAQQRDSEMAYREKLEQLEADYLSVVCCFKSAEQTLQQLKDQITKYEKDNGRLKTENQELESQRDGLQARIEALMTE 1260
                  566666666666664111445568899********************************************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  260 lqeklseleeelaeireemarql 282 
                  ++++ s+le++l++ ++++a + 
  CCE27063.1 1261 THSSGSQLEKNLESWKKDVAENK 1283
                  ******************98765 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.024
                  XX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  212 rsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklselee 269 
                  +s k++++e ++q ++    le++++++a le++  ++e++++  l+++++++++  +
  CCE27063.1 1273 ESWKKDVAENKQQRDAAIKSLEQMQSENALLEQRAGDAEQKVALLLNQVEHSVDNYRR 1330
                  57899**************************************999999988877665 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 0.7
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  261 qeklseleeelaeireemarqlreYqeLLd 290 
                   ++l++l +el+++r++ ++ + +Y++ L+
  CCE27063.1 1407 SAALDNLASELETLRSHWEATNMNYHHRLS 1436
                  345666667777777777777777766555 PP

>> betaPIX_CC  betaPIX coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.5       0.8   1.6e+03      46      66 ..     832     852 ..     828     864 .. 0.80
   2 ?   10.2   0.7   0.00025      0.49      39      81 ..     937     979 ..     919     985 .. 0.87
   3 ?    5.1   1.3      0.01        20      25      78 ..    1207    1260 ..    1191    1271 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.8
  betaPIX_CC  46 elkqenkklkksleeEqkaRk 66 
                  lk +  +lk  l  E+ aR+
  CCE27063.1 832 DLKSQVEQLKNELAAERNARQ 852
                 577777888888888888885 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00025
  betaPIX_CC  39 aLkdevqelkqenkklkksleeEqkaRkdLEkvvrkllksind 81 
                 +L+  v+  +    +l+k+leeE+ aR  +E+ ++kl  + + 
  CCE27063.1 937 SLRSAVNASQDARSHLEKKLEEERAARDTIEEELNKLRMEFDA 979
                 68889999999999*********************99776655 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.01
  betaPIX_CC   25 qtvleekslVDtVYaLkdevqelkqenkklkksleeEqkaRkdLEkvvrkllks 78  
                  ++v+  ks   t  +Lkd++++ +++n +lk   +e +  R  L   ++ l+ +
  CCE27063.1 1207 SVVCCFKSAEQTLQQLKDQITKYEKDNGRLKTENQELESQRDGLQARIEALMTE 1260
                  66777788888999****************987555555555576666666655 PP

>> ALS2CR11  Amyotrophic lateral sclerosis 2 candidate 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.5     0.005        10     229     355 ..    1182    1313 ..    1164    1346 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.005
    ALS2CR11  229 psvvrleklqqkPrerlekmkkeyrnlntWiekanylegilnPklekkdskesnv...dealesekedlse..ekeeevkaldvplineeaetvpke 320 
                      +    +   re+le++  +y ++    + a+   + l+ +++k ++++  +   +++les+++ l+   e   + + +  + ++++ e+  k+
  CCE27063.1 1182 QFEAQQRDSEMAYREKLEQLEADYLSVVCCFKSAEQTLQQLKDQITKYEKDNGRLkteNQELESQRDGLQAriEALMTETHSSGSQLEKNLESWKKD 1278
                  4445555555667****************9999999888899999887777544310134566666655551144444455566899********** PP

    ALS2CR11  321 lldnddkkdltlPtlkqldqdnseavaaksdestk 355 
                  + +n++++d ++ +l+q++ +n+  ++   d  +k
  CCE27063.1 1279 VAENKQQRDAAIKSLEQMQSENALLEQRAGDAEQK 1313
                  *******************9998876666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1875  (0.104579); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        72  (0.00401584); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.90u 0.38s 00:00:02.27 Elapsed: 00:00:00.67
# Mc/sec: 6841.62
//
Query:       CCE27064.1  [L=1434]
Description: related to raptor, a binding partner of target of rapamycin (TOR) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-64  215.4   0.0    5.4e-64  214.6   0.0    1.4  1  Raptor_N         Raptor N-terminal CASPase like domain
    5.6e-07   30.2   8.2        6.1    7.9   0.0    7.4  7  WD40             WD domain, G-beta repeat
    0.00029   20.8   0.1       0.14   12.2   0.1    2.7  2  BBS2_Mid         Ciliary BBSome complex subunit 2, middle reg
  ------ inclusion threshold ------
      0.078   13.4   0.1         10    6.6   0.0    3.6  4  HEAT_2           HEAT repeats
      0.083   12.9   0.0       0.17   11.9   0.0    1.5  1  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
       0.61   10.3   2.4        1.5    9.1   2.4    1.6  1  C5HCH            NSD Cys-His rich domain


Domain annotation for each model (and alignments):
>> Raptor_N  Raptor N-terminal CASPase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.6   0.0   1.8e-67   5.4e-64       1     147 []     195     346 ..     195     346 .. 0.97

  Alignments for each domain:
  == domain 1  score: 214.6 bits;  conditional E-value: 1.8e-67
    Raptor_N   1 lktksvilvlclnigvdppdvvktkpcarleawidpss.e....leeiaknlqdqyeslqlrarykqlldptvedvkklcqslrrnakdervlfHYnGh 94 
                 lkt+s++l +clnigv+ppd +kt+p arleaw dp++ +    le+i+k+lq+qye+l +rarykq+ldp+ve++kk+c slrrnak+ervl+HYnGh
  CCE27064.1 195 LKTVSAALAVCLNIGVEPPDQLKTTPGARLEAWTDPTVpPiqkaLENIGKALQTQYETLAIRARYKQYLDPSVEETKKFCVSLRRNAKEERVLLHYNGH 293
                 59************************************6366777****************************************************** PP

    Raptor_N  95 gvprptengeiwvfdksytqyiplslaelqewlgspsiyifDCsnAglileaf 147
                 gvp+pt +geiwvf+k+ytqyip+sl++lq wl++p+i+++DCs+Ag+il+++
  CCE27064.1 294 GVPKPTPSGEIWVFNKNYTQYIPVSLYDLQHWLQAPTIFVWDCSEAGNILNNY 346
                 **************************************************986 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.7     5e+03      15      29 ..     944     958 ..     935     961 .. 0.84
   2 ?    2.6   0.0     0.095   2.8e+02      17      38 .]    1115    1141 ..    1092    1141 .. 0.75
   3 !    7.9   0.0     0.002       6.1      13      37 ..    1161    1187 ..    1146    1188 .. 0.79
   4 ?    3.8   0.0     0.041   1.2e+02      13      38 .]    1259    1285 ..    1243    1285 .. 0.71
   5 !    7.7   0.0    0.0023       6.8      24      38 .]    1318    1333 ..    1301    1333 .. 0.76
   6 ?   -0.3   0.0      0.78   2.3e+03      15      38 .]    1358    1375 ..    1340    1375 .. 0.75
   7 ?    4.4   0.2     0.026        76       5      37 ..    1388    1423 ..    1384    1423 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.7
                 EEEEETTSSEEEEEE CS
        WD40  15 slafspdgawlasGs 29 
                 s+++s dg++ asGs
  CCE27064.1 944 SQRYSFDGHLAASGS 958
                 566899999999997 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.095
                  E.....EETTSSEEEEEETTSEEEEEE CS
        WD40   17 a.....fspdgawlasGsdDgtvriWd 38  
                  +     f+++ + la ++d +tv +Wd
  CCE27064.1 1115 QpakmtFHQYEDHLAVSDDGNTVTVWD 1141
                  14455599999***99999*******9 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.002
                  EEEEE..EETTSSEEEEEETTSEEEEE CS
        WD40   13 vtsla..fspdgawlasGsdDgtvriW 37  
                  +++++  + +d a+l++Gs Dg +r++
  CCE27064.1 1161 ISDMKfiNEDDEAFLMTGSSDGVIRVY 1187
                  66666667889999****99*****98 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.041
                  EEEEE.EETTSSEEEEE.ETTSEEEEEE CS
        WD40   13 vtsla.fspdgawlasG.sdDgtvriWd 38  
                  vtsl   +  g+ +++G + Dg vr++d
  CCE27064.1 1259 VTSLTsDQMTGNVFVAGfG-DGAVRVFD 1285
                  6666543444555789955.******98 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0023
                  E.EEEEETTSEEEEEE CS
        WD40   24 w.lasGsdDgtvriWd 38  
                    l+s+s++g++riWd
  CCE27064.1 1318 ReLISASRNGKIRIWD 1333
                  357899*********9 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.78
                  EEEEETTSSEEEEEETTSEEEEEE CS
        WD40   15 slafspdgawlasGsdDgtvriWd 38  
                  +l      + +a G+  +tv++++
  CCE27064.1 1358 HL------PVIAVGTSQHTVKVFN 1375
                  34......67899966*****987 PP

  == domain 7  score: 4.4 bits;  conditional E-value: 0.026
                  EEEESS..SSEEEEEEETTSSEE.EEE.ETTSEEEEE CS
        WD40    5 rtltGH..ssvtslafspdgawl.asG.sdDgtvriW 37  
                   ++  H  +++++ af+p+++ l +++ + D++v ++
  CCE27064.1 1388 SSFLHHrgGPISATAFHPHQPILgCAArG-DHHVNVY 1423
                  5666788555************9434445.****886 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0049        15       7      52 ..    1167    1212 ..    1163    1218 .. 0.80
   2 !   12.2   0.1   4.6e-05      0.14      40     106 ..    1257    1330 ..    1215    1332 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0049
    BBS2_Mid    7 vdgdgeneLvvgsddfeirvfkeeelvaeitetekvvslarleker 52  
                  +++d+e+ L+ gs d  irv+++ +   +++ +    +l+++ +++
  CCE27064.1 1167 INEDDEAFLMTGSSDGVIRVYRKYDSDPDAELATSWRALTHMVPSN 1212
                  45778899**************999888888888888888877666 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.6e-05
    BBS2_Mid   40 ekvvsla..rlekerfayaleNGtvgvyekke.......rlWrvksknevvalaaydingdgtkelivgwsnGkld 106 
                  + v+sl+  +++++ f++++  G v v++ ++       r+W+  ++++ ++   +  +  g++eli + +nGk+ 
  CCE27064.1 1257 SCVTSLTsdQMTGNVFVAGFGDGAVRVFDTRQrpqdsmvRKWKDETERQWIKSVHM--QRGGQRELISASRNGKIR 1330
                  556666633689999*************9766222222268888888887765555..55589***********96 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.49   1.5e+03      28      51 ..     567     590 ..     561     598 .. 0.77
   2 ?   -2.8   0.0       2.8   8.5e+03      40      57 ..     710     727 ..     681     736 .. 0.76
   3 ?    6.6   0.0    0.0034        10       4      58 ..     748     813 ..     745     833 .. 0.76
   4 ?    1.1   0.1      0.18   5.4e+02       8      25 ..     888     905 ..     884     943 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.49
      HEAT_2  28 gnpealpaLvellededpavRraa 51 
                 ++pe lp ++++l +++ +vR+ +
  CCE27064.1 567 RPPEQLPVVLQVLLSQHHRVRALI 590
                 677888888888888888888754 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.8
      HEAT_2  40 lededpavRraaaeaLga 57 
                 +++e+p  R+ a   +++
  CCE27064.1 710 IQSENPLLRQWAGLCISQ 727
                 367888888877666654 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0034
      HEAT_2   4 LlqalendpdpevrraairaLg.........rignp......ealpaLvellededpavRraaaeaLgai 58 
                 Ll ++ +dp++evr+a + a           +   +      ++ ++++e+ +d +p vRr+ + +L+++
  CCE27064.1 748 LLYLM-KDPCCEVRAAMVVAYTtfmgipqltD---EvtrieeSIAWTILEMGTDGSPLVRREFVCYLSRF 813
                 66666.9********99999997665554440...25555548899999999*********999999875 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.18
      HEAT_2   8 lendpdpevrraairaLg 25 
                 l+ dp+pev+r+a ++  
  CCE27064.1 888 LSVDPHPEVQREATMVVD 905
                 444677777777766665 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.7e-05      0.17       4      63 ..     678     735 ..     675     739 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.7e-05
  Atx10homo_assoc   4 elvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneen 63 
                       +  +l++l+ +++  q  + + d +  +L    i+++nP++r+wa l+i +L  + +e+
       CCE27064.1 678 MCAFVLAMLCKDHPCGQMVCSQSDVMVSCLV--HIQSENPLLRQWAGLCISQLWSDLPEA 735
                      5666778888777777777777777777774..58899*************998877766 PP

>> C5HCH  NSD Cys-His rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.4   0.00049       1.5      12      45 ..     676     709 ..     671     715 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00049
       C5HCH  12 tsfCefCPssFCkeHekGalvasalegrlcCseH 45 
                  ++C f  +  Ck+H  G++v s+ +  ++C  H
  CCE27064.1 676 KAMCAFVLAMLCKDHPCGQMVCSQSDVMVSCLVH 709
                 678****************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.45
# Mc/sec: 9655.41
//
Query:       CCE27065.1  [L=592]
Description: related to aspartate--tRNA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-66  224.2   0.0    2.5e-66  223.9   0.0    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
      3e-05   23.9   0.0    5.4e-05   23.1   0.0    1.5  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
        0.6    9.0   6.8        0.9    8.4   6.8    1.2  1  NARP1            NMDA receptor-regulated protein 1
        5.1    7.4   4.7         12    6.2   4.7    1.6  1  CsgE             Curli assembly protein CsgE


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.9   0.0   5.5e-70   2.5e-66       2     312 ..     263     590 ..     262     592 .] 0.93

  Alignments for each domain:
  == domain 1  score: 223.9 bits;  conditional E-value: 5.5e-70
                  CCHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   2 eelrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqiar 99 
                  + ++l+n  ++ r +  +++  +r+   k++ +yl+++gf ++e+P+L+ +++e+g++ F ++   k  + + L+qspq+y+++ i++g +rv++i++
   CCE27065.1 263 MATHLNNPAMHKRAPVQQAIADVRMATRKLFAEYLDSQGFNQFEPPCLIGAASEGGSNVFGMPYFDK--QAY-LAQSPQFYKQFEIAGGRKRVYCIGP 357
                  57899*********************************************************66655..555.************************* PP

                  EE--S--BTTB-S-CEEEEEEEEET-SCHH.HHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS.EE-SSS-E........EEEHHHHHHHHHTS.... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx........xxxxxxxxxxxxxx.... RF
  tRNA-synt_2 100 aFRaEdsrtdrhlaEFtqieaemsfieeed.imqvleelikslvkevlessakdiefvirrns.kdlkkpfk........rltykeaieklnei.... 183
                  +FRaE+s+t rh++EFt +++em++ +    +  +le+++  +++ + +++a++i    +    +     f         rlt++e    l+ +    
   CCE27065.1 358 VFRAENSNTPRHMTEFTGLDLEMEIEDTYTeVRTMLEQVLLFIFRGLSTRCADQIALIRTVYPsE----DFLlpepghevRLTFAEGQALLRAHgppe 451
                  *************************998888****************999999997776664342....33333445556****************** PP

                  ......-SS--HHHHHHHHH....HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCHHSSSGGGGH CS
                  ......xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 184 ......gkdldkaderalvk....keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklkskgldeeaeekfs 271
                        ++d+++++e+al      k k++++ + +fP+  +pFya ++ ++++lt+++D++++g E+++G +Ri+ pe le+++++kg+d  +++ ++
   CCE27065.1 452 yrnvsdHEDMSTPQEKALGAlireKYKTDFYVLDKFPEGARPFYAMEDPENPALTNAFDFFMRGQEILSGGQRIHLPEALEARIRKKGVD-PKSNGIK 548
                  ******9**********987777799****************************************************************.99***** PP

                  HHHHHHHC.T--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-X CS
                  xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 272 wylealey.GapphgGlglGldRlvmlllgsesIrdviaFPk 312
                  +y+++++  G+pphgG g+GldR+v++ l+++s++ ++++P+
   CCE27065.1 549 EYVDVFRSaGVPPHGGGGIGLDRVVAWYLNLPSVHLASYYPH 590
                  *****9877********************************7 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.2e-08   5.4e-05       2      74 ..     115     202 ..     114     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.2e-08
                      EEEEEEEEEEEEEETTEEEEEEEETT.EEEEEEEET........HHHHHHHTTS-TTSEEEEEEEEEEC..TTS......SEEEEEEEEE CS
  tRNA_anti-codon   2 tvaGrvtsisdrsggkvifidlrDgt.griqvvlfr........eeatklaenlkeGdvvrvtGrvkrr..pgg......elelkveeie 74 
                      +v+G++++ +  +g+k++fi+lr +    iq v+          +++ k+   l+ +++v v+G++ +   p         +el+++++ 
       CCE27065.1 115 KVRGWIQNSR-MQGAKMAFIELREERnWAIQGVVAAspdgkpvsKQMVKWIGGLTLESFVLVEGTLAKPleP-VksvrvsTFELHITKCY 202
                      79*******9.***************99****************************************9662.13556778888888865 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   6.8    0.0002       0.9     401     443 ..      35      77 ..      16      94 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0002
                 HHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--...... CS
       NARP1 401 ksaelseaerkklrkkakkaekkaekeeaekaekekekkaaek 443
                 ++a  s++  kk++ kakk+++ka+++++++a++ ++k+aa +
  CCE27065.1  35 DEAGPSKKALKKAEAKAKKEAEKAKRAAEHQAKQAAAKAAAGN 77 
                 3445677788888888888888888888885554444333222 PP

>> CsgE  Curli assembly protein CsgE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   4.7    0.0026        12      62     104 ..      42      84 ..      41      85 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0026
        CsgE  62 tflspaarqlkeeaeqAvaiveealaqqklqalladtaDlakd 104
                 ++l++a++++k+eae+A +++e++ +q  ++a+  +t+Dlakd
  CCE27065.1  42 KALKKAEAKAKKEAEKAKRAAEHQAKQAAAKAAAGNTEDLAKD 84 
                 579999***********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1372  (0.0765241); expected 358.6 (0.02)
Passed bias filter:                      794  (0.0442858); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 4043.59
//
Query:       CCE27066.1  [L=412]
Description: related to ethanolaminephosphotransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-18   65.1   0.1    7.3e-18   65.1   0.1    3.4  3  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.1   4.1e-22   7.3e-18       1      66 []      46     121 ..      46     121 .. 0.96
   2 ?    0.2   0.2     0.073   1.3e+03      26      45 ..     159     195 ..     142     248 .. 0.67
   3 ?   -4.4   9.1         1   1.8e+04      26      44 ..     312     389 ..     261     389 .. 0.52

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 4.1e-22
                      S-HHHHHHHHHHHHHHHHHGGGS-H.............HHHHHHHHHHHHHTTHHHHHHHHTT---H.HHHHHHHHHH CS
  CDP-OH_P_transf   1 nlPnaiTllrlllsvlailllltyyp...........lvlailllliasltDalDGklARrlnqvst.lGkllDslaD 66 
                      ++Pn+iTl+++l++v+++l+ll+y+p           + +a+ l+l++++ Da+DG +ARr++q s  lG+l+D+++D
       CCE27066.1  46 MAPNLITLTGFLFIVVNVLTLLWYNPtldqdcpswvyYSWAVGLFLYQTF-DAVDGAQARRTKQ-SGpLGELFDHGVD 121
                      69***********************************************9.***********99.666********99 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.073
                      ...................HHHHHHHHHHHHHTTHHH CS
  CDP-OH_P_transf  26 p.................lvlailllliasltDalDG 45 
                                        +   ++l+l++++t+ + G
       CCE27066.1 159 TwdeyhtktltlgivngpVEGVLILVLVYAMTGYFGG 195
                      2344556655555555543333344455555566555 PP

  == domain 3  score: -4.4 bits;  conditional E-value: 1
                      ....................................................HHHHHHH...............HHHHHHTTHH CS
  CDP-OH_P_transf  26 p..................................................lvlailll...............liasltDalD 44 
                      +                                                  +      l               +i s++D+lD
       CCE27066.1 312 HlvklpfpywnvlaiplafgvidslaplclqrfgigwpsalgndeyqvsysF------LmlglalgvygsfvvdVIVSICDFLD 389
                      0444445444444444444444444444444444444455555554444331......03333444455555555999****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3031.91
//
Query:       CCE27067.1  [L=1290]
Description: probable RNA-dependent RNA polymerase (RdRP) SAD-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-184  614.8   0.0   2.3e-184  614.4   0.0    1.2  1  RdRP      RNA dependent RNA polymerase


Domain annotation for each model (and alignments):
>> RdRP  RNA dependent RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  614.4   0.0  1.3e-188  2.3e-184       1     586 []     442    1006 ..     442    1006 .. 0.93

  Alignments for each domain:
  == domain 1  score: 614.4 bits;  conditional E-value: 1.3e-188
        RdRP    1 vtptriilegpeleksnrvlRrfkegsdrFlrvkfpdedge.rldse.dgeellkervkkvlkegiviagrkfeflafsdsqlrehsvwffapfeee 95  
                  +tpt+++l++p++e+snrv R+++  +drFlrv+f  e    r++++ ++++ + +rvk++l egi+i+ r+++flaf +sqlre s++ff+p    
  CCE27067.1  442 ITPTTMLLSSPTIETSNRVFRKYDWLQDRFLRVQFVGEPEFgRINANrQDNQDIWRRVKRTLYEGIRIGSRTYRFLAFGSSQLRECSAYFFCPI--- 535 
                  79************************************8779*****98899999************************************983... PP

        RdRP   96 gerisaeeirkwlgdfenisqsvaKyaaRlglalSttrp.tvvkvereqiiieeidDv.kneekdiylftDGvGliSrelarkiakklglkkaeelP 190 
                   er+s+++ir+w+g+f++i + vaKyaaRlg+++Sttr+   + v    +i   i+D+ +n+     +ftDGvGliS+  a+ i++ ++l+     P
  CCE27067.1  536 -ERLSCHDIRAWMGEFDHI-KVVAKYAARLGQCFSTTREiRGIPVP--RVI--YIPDIeRNG----LCFTDGVGLISKFQAQVITQDMRLDVM-SEP 621 
                  .358***************.*******************6556654..333..69**96666....7***********************954.56* PP

        RdRP  191 safQiRigGaKGvlavdkrlkp.ekielrpSqiKfkseeddsekrtleivkvsskpkpayLnrqlikiLedlgvpeevflellkealeelrealkda 286 
                  +afQ+R+gG+KGvl+v+++  +  ++++rpSq Kfks +  +    le++k++s++ +a+Lnrq+i+iLe+lgvp++vf++ll+e+++++++a +d 
  CCE27067.1  622 TAFQFRMGGSKGVLSVWPQI-KwGEVHIRPSQEKFKSLS--KG---LEVIKCASRA-TATLNRQTITILESLGVPRRVFMSLLDEQIKAFEKASRDS 711 
                  ******************99.5577**********8885..55...**********.**************************************** PP

        RdRP  287 gaaaellkkagdpskleellaelldsgfdpseldpflrsllkalvkeslrklkekarIpvpksatllgvaDetgvLk................egev 367 
                   aa++ll+k++d+ + + +laell+++f+  e+ pf+++llk ++++s++ l+ekar++v ksa++lg++Detg+L+                 +++
  CCE27067.1  712 AAAIRLLSKFVDERQNTLVLAELLRAQFKTVEE-PFTSNLLKIWISWSFKLLREKARLHVAKSAFVLGCVDETGTLRghsretegsalkdidqLPQI 807 
                  ****************************98866.*************************************************************** PP

        RdRP  368 fvqlsealdqedeksktkllkgdvlVtRnPalhpgDiqvvkavdvpelrhlkdviVFstkGdrslaselsGGDlDGDkywViwdpelefapakpsne 464 
                  f+ql+++    + +  +++++g ++V R+P+lhpgDi++v+avd p lrhl+dv VF+++Gdr+++s+lsGGDlDGD+++Viwdpel+  p  ++n+
  CCE27067.1  808 FLQLTDF----GGS-AKTVVEGVCIVGRHPSLHPGDIRIVQAVDNPRLRHLTDVAVFPSTGDRPVPSMLSGGDLDGDDFFVIWDPELI--PR-EWNY 896 
                  ****987....322.468888**********************99******************************************6..55.7999 PP

        RdRP  465 epadyeea.kpkeldrevtvediadffveymksdvlGlisnahlaiadqeegiddpkclkLaelhskaVDypKtGipvdkkeiprelkkpkekPdfk 560 
                  +p+dye   kp el+r+vtv+d++dff++y+k+dvlGli+++hla+ad+ +g ++p cl L ++hs aVDypKtG p++ ++i +    pke+P+f+
  CCE27067.1  897 RPMDYE-GpKPLELERDVTVDDLQDFFLHYLKNDVLGLIADSHLAFADR-HGPKSPLCLALVDKHSRAVDYPKTGQPAN-FDISEL---PKEWPHFM 987 
                  9*****.559**************************************8.*****************************.554444...579***** PP

        RdRP  561 ekekkekakkpyykskkilgkLyrev 586 
                  ek+       ++y+s+k+lg +y+ev
  CCE27067.1  988 EKK-------RTYRSEKVLGAMYDEV 1006
                  644.......68************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.42
# Mc/sec: 9119.27
//
Query:       CCE27068.1  [L=535]
Description: probable FUM1-fumarate hydratase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.8e-110  369.3   0.0   3.1e-110  368.5   0.0    1.4  1  Lyase_1      Lyase
      4e-22   78.4   0.0      1e-21   77.1   0.0    1.8  1  FumaraseC_C  Fumarase C C-terminus
  ------ inclusion threshold ------
      0.046   13.4   0.0       0.12   12.0   0.0    1.6  1  Luteo_PO     Luteovirus P0 protein


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.5   0.0  5.1e-114  3.1e-110       1     312 []      77     410 ..      77     410 .. 0.97

  Alignments for each domain:
  == domain 1  score: 368.5 bits;  conditional E-value: 5.1e-114
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHC.......HHHHHHHHHHHTTSST...HHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHH CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedik.......alaalkkaaakanvdl...keeaaaiikaldevleegklddqfvlkviqegsgtavnmnlne 89 
                 g+++v+ dk++g++ters+enfr+++ + +       a+++lk aaa++n++     ++ +ai++a++ev++ gkl+d+f+l+v+q+gsgt++nmn+ne
  CCE27068.1  77 GEIQVPGDKYWGAQTERSLENFRINQPQDRmpppivkAFGILKGAAATVNMRFgldPKIGQAIQQAAKEVAD-GKLMDHFPLVVWQTGSGTQSNMNANE 174
                 799**********************888889*****************************************.************************** PP

                 HHH....HHTT......HSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT..TT-EEEEEETTEEEEEEEHHHHHHHHH CS
     Lyase_1  90 vig....ellg......ekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakef..kdvvkiGrThlqdAtPvtlgqelsaya 176
                 vi+    e+lg      ++v+pnd+v+ ++SsnD++pT +++a++  l+++Llpal+ L+ al++k   f  k+++kiGrThlqdAtP+tl+qe+s+y+
  CCE27068.1 175 VISnraiEILGgtmgskKPVHPNDHVNRSASSNDTFPTVMHIAAVLDLENELLPALRSLRAALQAKVDDFeaKKIIKIGRTHLQDATPLTLAQEFSGYV 273
                 *****9999999999*9*************************************************98663379************************* PP

                 HHHHHHHHHHHHHHHHHTCEETTTTTTTSSTTTSCCTHHHHHHHHHHHHHCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT. CS
     Lyase_1 177 ealerdrerlkellkrllvellgggtavgtglnadpefaelvakelakvtglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssge. 273
                 ++l+ +++r++ +l   l +l++ggtavgtg+n+   fae++a+e++++tg    +apn+fea++++Da+v+++g l++latsL k+a+D+r+l sg+ 
  CCE27068.1 274 AQLDFSIKRVESSL-PDLRLLAQGGTAVGTGINTFEGFAEAIAEEVSRMTGTHfETAPNKFEALAAHDAIVQAHGSLNTLATSLTKIAQDIRYLGSGPr 371
                 **************.7788889999************************************************************************** PP

                 TSSEEEEGCCTSSC-TTSTTTEBTHHHHHHHHHHHHHHH CS
     Lyase_1 274 aglvelslaesepGSSiMPgKvNPvqlElltgvagrvvG 312
                 +gl+el l+e+epGSSiMPgKvNP+q+E+lt+v+++v+G
  CCE27068.1 372 CGLGELALPENEPGSSIMPGKVNPTQCEALTMVCAQVMG 410
                 **************************************9 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   1.7e-25     1e-21       1      54 []     476     529 ..     476     529 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 1.7e-25
                  GGGGGHHHHHHHHHHHHHHHHHHHT--HHHHHHHTT-.-HHHHHHHT-HHHHH. CS
  FumaraseC_C   1 LVTaLnphIGYekAakIAkeAlkegktlreavlelgllteeeldelldpekMtg 54 
                  LVT+Lnp+IGY+ A+k+Ak A+k+g tl+e ++el+ lt+ee+del++pe M+g
   CCE27068.1 476 LVTCLNPKIGYDMASKVAKNAHKKGLTLKESAMELKALTSEEFDELVRPELMIG 529
                  8***************************************************85 PP

>> Luteo_PO  Luteovirus P0 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     2e-05      0.12     120     160 ..     435     475 ..     429     481 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2e-05
    Luteo_PO 120 erlqrhqeilasgmeeFkrflsvwlrdierslpespkespv 160
                  +l   ++ila gm++F+++l v l++ e ++ +  kes++
  CCE27068.1 435 RNLLHSSRILADGMRSFEKNLVVGLQANEDKIAQIMKESLM 475
                 56777899****************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3803.49
//
Query:       CCE27069.1  [L=413]
Description: related to epoxide hydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-36  123.5   0.7    6.3e-34  116.6   0.0    2.3  2  EHN              Epoxide hydrolase N terminus
    1.6e-11   44.3   0.1    2.6e-11   43.6   0.1    1.3  1  Abhydrolase_1    alpha/beta hydrolase fold
     0.0011   19.7   6.6     0.0034   18.0   6.6    2.0  1  Abhydrolase_6    Alpha/beta hydrolase family
  ------ inclusion threshold ------
       0.24   11.1   0.0       0.41   10.4   0.0    1.3  1  E3_UbLigase_EDD  E3 ubiquitin ligase EDD


Domain annotation for each model (and alignments):
>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   0.0   1.4e-37   6.3e-34       1     108 []       5     117 ..       5     117 .. 0.92
   2 !    5.1   0.3    0.0062        28      43      86 ..     273     319 ..     231     332 .. 0.76

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 1.4e-37
         EHN   1 vrpfkisvpqeelddlkkrleltrlpeeeaeeeeeweeGvtkdelkelldyWkeeydWraeearln.sfpqfkteid..g...ldihFihlrsakpdai 93 
                 ++pfki+vp++ +++lk++l+l+ lp+e +e +++w +G+++d +++l+ yW++++dWra+ea+ln s+pq+kt++d  g   ldihF+h++s ++ +i
  CCE27069.1   5 ITPFKIDVPDAAITRLKQKLALSDLPAE-VEFSNDWAYGAPRDDIRRLATYWQDGFDWRAQEAKLNaSLPQYKTSVDveGfgaLDIHFVHKKSPRSGSI 102
                 689**********************975.555569*9*****************************99*******96442556*********99999** PP

         EHN  94 PllllhGWPgsflef 108
                 Pll++hGWPg f+e+
  CCE27069.1 103 PLLFCHGWPGHFMEV 117
                 *************96 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0062
         EHN  43 delkelldyWkeeydWraeearln.sfpqfktei..dgldihFihlr 86 
                 +++ e l++W+++y W + e     s+ qf t+    +++i + +++
  CCE27069.1 273 AWIYEKLHDWTDGYPWTDDEILTWvSIYQFSTAGaaASVRIYYERAH 319
                 78889999**********99877779999999752233555554443 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.1   5.9e-15   2.6e-11       2     118 ..     103     216 ..     102     237 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 5.9e-15
                    EEEEE-STTTCGGGGTTGHHHHHHHHT....TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd....gfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaae 93 
                    +l+++hG+pg +   a+  + p L ++     f+v+++ l+++g+S+         +g+a +a+  ++++  lg dk +  G+++G +i ++  a+
     CCE27069.1 103 PLLFCHGWPGHFMEVAK--ILPLLTESsqgpSFHVVAPSLPNYGFSDGVTK---RGFGIAQYAETCHKVMLNLGYDKYVTQGGDWGFFITRMISAL 193
                    89***************..*******************************9...79**************************************** PP

                    HGGGEEEEEEESECSSCCHHHHHHH CS
  Abhydrolase_1  94 yperVkalvllgaidpaaslieaqr 118
                    yp ++ a+          s+  +++
     CCE27069.1 194 YPAHCLACHINMI--AVRSPPTLAK 216
                    *******999888..3333444444 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   6.6   7.6e-07    0.0034       1     197 [.     104     324 ..     104     391 .. 0.54

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.6e-07
                    EEEE--GC.....G...C..HHHHHHHHCCT.....CEEEEE--TTSTS-GGCS...--HHHCHHHHHHHCCTT....TTSEEEEEETCH...HHH CS
  Abhydrolase_6   1 vlllHGagssassW...l..vapLaallaag.....vhvlapDlpGhGrsdppp...ldledladlaalldelaa..gggpvvlvGHSlG...Gal 78 
                    +l++HG       W   +  va +++ll++      +hv+ap+lp++G+sd+     ++    a++a++ +++    g+++ v  G ++G   + +
     CCE27069.1 104 LLFCHG-------WpghFmeVAKILPLLTESsqgpsFHVVAPSLPNYGFSDGVTkrgFGI---AQYAETCHKVMLnlGYDKYVTQGGDWGffiTRM 189
                    79****.......7654246887788888888889*************886655533333...777777777766667888899999999766665 PP

                    HHHHHHCC..EE....EEES-..----TTT..S----TTHHHHHHTT-C.CCCHCCHS-HSCCCCHHHC.CCCHCHCCCGHHHHCCHHCHTTCCHH CS
  Abhydrolase_6  79 alaaaplalvvg....vlldppptalpagl..laaalelllallallrl.lawlsreplprlfladeda.daawrarlarlaallaglgllpaaaw 166
                     +a+ p+  +++    +++ +ppt +  +l  l+++++ +   ++ +r   +w+++   ++++ ++ ++   + + +l+++  lla+ +   +++w
     CCE27069.1 190 ISALYPAHCLAChinmIAVRSPPTLAKNPLayLQDRFTAAGNHPQHFRErSEWFTK--EGQGYSHEHSTrPSTIGIALTDPVSLLAWIY-EKLHDW 282
                    55544444445555466666677444444433666666666555544445688876..5556666333212333333333333333333.236688 PP

                    TT-TTGC...............EEECTT-CHHHHCHHCCCHSTTEE CS
  Abhydrolase_6 167 adlpvpl...............lvlggeDplvprllerllaqagar 197
                    +d  +++                   g+ ++v+ ++er++a + ++
     CCE27069.1 283 TDGYPWTddeiltwvsiyqfstA---GAAASVRIYYERAHA-DPKT 324
                    88888877776544333333320...333333333333333.2222 PP

>> E3_UbLigase_EDD  E3 ubiquitin ligase EDD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   9.2e-05      0.41       3      29 ..     374     400 ..     372     405 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.2e-05
  E3_UbLigase_EDD   3 pasevPeeLieqvQvVLqgKSRqvIiR 29 
                      +a evPe L+ +v    +g  R+v +R
       CCE27069.1 374 AAHEVPELLVRDVKAMFEGGARDVAVR 400
                      689*********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3071.65
//
Query:       CCE27070.1  [L=16]
Description: uncharacterized protein CPUR_00542 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (16 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       109  (0.00607954); expected 358.6 (0.02)
Passed bias filter:                       74  (0.00412739); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.22s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 135.24
//
Query:       CCE27071.1  [L=744]
Description: related to transcription initiation factor tfiid 100 kDa subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-40  138.5   0.6    2.1e-40  138.0   0.6    1.2  1  TFIID_NTD2     WD40 associated region in TFIID subunit, NTD2 
    2.4e-38  129.4  12.1    1.6e-06   28.7   0.2    6.8  6  WD40           WD domain, G-beta repeat
    1.4e-11   44.5   0.1       0.51   10.7   0.0    5.5  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
      2e-07   30.7   0.0    4.3e-07   29.7   0.0    1.6  1  LisH           LisH
    6.2e-06   26.2   0.0     0.0041   17.0   0.0    3.3  3  eIF2A          Eukaryotic translation initiation factor eIF2A
     0.0017   17.4   0.3        5.7    5.8   0.0    3.8  4  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
  ------ inclusion threshold ------
      0.081   11.6   0.0        4.5    5.9   0.0    3.0  4  Nucleoporin_N  Nup133 N terminal like
       0.15   10.7   0.0         45    2.5   0.0    3.5  4  Nup160         Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> TFIID_NTD2  WD40 associated region in TFIID subunit, NTD2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   0.6   9.2e-44   2.1e-40       2     129 ..      75     205 ..      74     206 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 9.2e-44
                 XXXHHHHHHHHHHHHHHHTS-HHHHHHHGGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGGGGHH.HHHHHTT--SHHHHHHSHHHHHHHHS-EEE CS
  TFIID_NTD2   2 kdpekyekayelLkkwiessldiykpeLsrllyPvFvhlyLelvakgaeeeakkFfekfkedhealhkedlkkLasisspehleenelakafrenkyri 100
                 ++p+ky+k+++lLk+w+e++l++yk+eLs+ll+PvFv+++Lel  +g++e++k F++++++ +++lh++dlk++++i+ p+h++en++ak +renkyri
  CCE27071.1  75 TGPKKYQKSFKLLKEWVENNLELYKFELSKLLWPVFVYSFLELAGQGYTEDSKLFLKDLGHYFQRLHADDLKTFSTITLPQHVAENSIAKLYRENKYRI 173
                 579************************************************************************************************ PP

                 EEEHHHHHHHHHHHHHTT-H...HHHHHHHHH CS
  TFIID_NTD2 101 klskaafelLlrfLeekeka...vllkilneh 129
                 +l+++a   L++fLe+++++   v+ ++l ++
  CCE27071.1 174 PLNQHASGDLFNFLERESEQggsVIRQLLVNY 205
                 ****************9999898888888776 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   7.7e-06     0.017       5      38 .]     360     394 ..     356     394 .. 0.80
   2 !   19.9   0.0   4.3e-07   0.00096       4      38 .]     414     471 ..     412     471 .. 0.76
   3 !   23.9   0.3   2.3e-08   5.3e-05       2      37 ..     476     512 ..     475     513 .. 0.89
   4 !   26.8   0.1     3e-09   6.7e-06       3      38 .]     519     557 ..     517     557 .. 0.89
   5 !   16.6   0.0   4.8e-06     0.011       2      38 .]     562     599 ..     561     599 .. 0.92
   6 !   28.7   0.2   7.1e-10   1.6e-06       8      38 .]     610     642 ..     603     642 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.7e-06
                 EEEESS...SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH...ssvtslafspdgawlasGsdDgtvriWd 38 
                    t H   +sv++++fs dg++ a G+    +r+W+
  CCE27071.1 360 F--TFHntfGSVSCMDFSEDGKMAAVGTSESYIRVWS 394
                 4..45643444*************99*66*******5 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 4.3e-07
                 EEEEESS.SSEEEEEEETTSSE......................EEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgaw......................lasGsdDgtvriWd 38 
                  r+l GH ++v+++afs++ +                       l+s+s Dg+vr+W+
  CCE27071.1 414 SRKLIGHaGPVYDVAFSDSASGppqrlfgddgrqnppidgrpklLISCSADGHVRLWS 471
                 57899**999*****55444445555555555558888888887899**********5 PP

  == domain 3  score: 23.9 bits;  conditional E-value: 2.3e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  cl  ++ H +++    +sp+g+++++G++D+ vr+W
  CCE27071.1 476 ACLCLYKSHeGPIFRALWSPHGHYFLTGGYDKVVRVW 512
                 6888999**999*6666******************** PP

  == domain 4  score: 26.8 bits;  conditional E-value: 3e-09
                 EEEEEESS.SSEEEEEEETTSSEEEEEET..TSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsd..DgtvriWd 38 
                 ++r   GH +s++++a++p+g +++s+sd  D+++r+W+
  CCE27071.1 519 PQRLMVGHdTSISAIAWHPNGMYVFSASDetDKSIRMWS 557
                 566678**999****************9888*******5 PP

  == domain 5  score: 16.6 bits;  conditional E-value: 4.8e-06
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  c r++ GH +++t+l   p+g+ las++  g++ +Wd
  CCE27071.1 562 ACARVFAGHtDHITALECAPNGKILASADLAGNIFFWD 599
                 6999*****888**************999999999998 PP

  == domain 6  score: 28.7 bits;  conditional E-value: 7.1e-10
                 ESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH..ssvtslafspdgawlasGsdDgtvriWd 38 
                 +GH  ++++s++fs +++ lasG+ Dgtvr+Wd
  CCE27071.1 610 RGHgrGGIWSMSFSMESTVLASGGQDGTVRLWD 642
                 7**8666*************************9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00071       1.6      36      67 ..     364     395 ..     355     413 .. 0.83
   2 ?    2.5   0.0     0.078   1.7e+02      51      81 ..     456     486 ..     452     496 .. 0.82
   3 !   10.7   0.0   0.00023      0.51      36      87 ..     525     577 ..     506     578 .. 0.78
   4 !    8.2   0.0    0.0013       2.9      37      75 ..     570     608 ..     564     615 .. 0.87
   5 !    9.5   0.0   0.00054       1.2      39      69 ..     615     645 ..     606     655 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00071
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrllda 67 
                  ++ ++v+++ +++dgk+ av++s++ +r+ + 
   CCE27071.1 364 NTFGSVSCMDFSEDGKMAAVGTSESYIRVWSL 395
                  556789**********************9876 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.078
  ANAPC4_WD40  51 klLavaysdgevrlldaesgkvvhslsvkse 81 
                  klL    +dg+vrl + es  ++  ++ ++ 
   CCE27071.1 456 KLLISCSADGHVRLWSLESWACLCLYKSHEG 486
                  7899999***********9999888887766 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00023
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdg..evrlldaesgkvvhslsvksekavtcl 87 
                  ++d +++++aW+p+g     a +++  ++r+ ++ +g + + +  +++ ++t l
   CCE27071.1 525 GHDTSISAIAWHPNGMYVFSASDETdkSIRMWSVVTGACARVFAGHTD-HITAL 577
                  5899***********9988776544339***********999988877.47766 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0013
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  +  ++++L+  p+gk+La a   g++ + d  +g+ ++ 
   CCE27071.1 570 HTDHITALECAPNGKILASADLAGNIFFWDLTKGTRIKR 608
                  6779***************************99988776 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.00054
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaes 69 
                  + + s++++++ ++La + +dg+vrl d+e+
   CCE27071.1 615 GGIWSMSFSMESTVLASGGQDGTVRLWDVEE 645
                  568899**********************986 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.9e-10   4.3e-07       1      27 []      33      59 ..      33      59 .. 0.98

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.9e-10
                HHHHHHHHHHHHHCT-HHHHHHHHHHT CS
        LisH  1 eeLNrLIydYLvkeGyeetAeaFekEa 27
                ++LN+++ dYL+k+G++ t e F++E+
  CCE27071.1 33 QNLNQIVTDYLLKRGFNRTEEVFRQES 59
                79************************8 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.016        37     117     164 ..     359     406 ..     353     425 .. 0.90
   2 !   17.0   0.0   1.8e-06    0.0041      84     178 ..     466     558 ..     456     574 .. 0.80
   3 ?    0.6   0.0      0.19   4.3e+02      99     140 ..     570     608 ..     550     612 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.016
                 EE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEEEEEE-T CS
       eIF2A 117 laGfgnlaGeleiwdvkkkkkiakaeaanatlvewspdgryvlTatta 164
                 +  f n+ G+++ +d ++  k+a +  +++    ws dgr + T+ t 
  CCE27071.1 359 MFTFHNTFGSVSCMDFSEDGKMAAVGTSESYIRVWSLDGRSLPTMNTN 406
                 55799***********************************99998876 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.8e-06
                 EEEEEECS...CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT..TTEEEEEEE-TT--EEEE-TTSSEEEEEE-TTT-SSS-EEEEEE CS
       eIF2A  84 kvslfdlk...vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvk..kkkkiakaeaanatlvewspdgryvlTattaprlrvdngfkiws 177
                 +v l++l+   +  ++k +e +    ++sp+g+++l++G+  +   + +w ++  + + +   + +  + + w+p+g+yv  a+      +d ++++ws
  CCE27071.1 466 HVRLWSLEswaCLCLYKSHEGPIFRALWSPHGHYFLTGGYDKV---VRVWMQDhaSPQRLMVGHDTSISAIAWHPNGMYVFSASDE----TDKSIRMWS 557
                 666666654557777888888888999***************9...77775553388888888999999***********999865....888888887 PP

                 T CS
       eIF2A 178 y 178
                 +
  CCE27071.1 558 V 558
                 5 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.19
                 EEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEE CS
       eIF2A  99 eeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiak 140
                 ++++  ++   p+gk+++ a   +laG++ +wd +k + i++
  CCE27071.1 570 HTDHITALECAPNGKILASA---DLAGNIFFWDLTKGTRIKR 608
                 55556667778899988888...689*******998888775 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.082   1.8e+02     178     215 ..     356     394 ..     342     400 .. 0.85
   2 !    5.1   0.0    0.0041       9.2     260     281 ..     458     479 ..     439     502 .. 0.78
   3 ?   -1.3   0.0      0.36     8e+02     187     216 ..     570     600 ..     550     611 .. 0.76
   4 !    5.8   0.0    0.0025       5.7     190     216 ..     617     643 ..     601     652 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.082
    Ge1_WD40 178 eegllkieehs.liveaafspdGtalatasedGevkffq 215
                 +  ++ ++++   +++  fs dG   a+ +++ +++ + 
  CCE27071.1 356 SACMFTFHNTFgSVSCMDFSEDGKMAAVGTSESYIRVWS 394
                 5677788888558999*******************9986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0041
    Ge1_WD40 260 itgadnnselklWscelWtClq 281
                 + +++++  ++lWs e+W Cl 
  CCE27071.1 458 LISCSADGHVRLWSLESWACLC 479
                 456777889***********95 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.36
    Ge1_WD40 187 hs.liveaafspdGtalatasedGevkffqv 216
                 h+ +i+    +p+G  la a   G + f+ +
  CCE27071.1 570 HTdHITALECAPNGKILASADLAGNIFFWDL 600
                 4336777777888888888888888888865 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0025
    Ge1_WD40 190 iveaafspdGtalatasedGevkffqv 216
                 i + +fs + t+la   +dG+v+++ v
  CCE27071.1 617 IWSMSFSMESTVLASGGQDGTVRLWDV 643
                 67789********************98 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       0.9     2e+03     209     234 ..     374     399 ..     349     434 .. 0.64
   2 ?   -1.2   0.0      0.28   6.3e+02     213     233 ..     454     475 ..     448     481 .. 0.86
   3 ?    5.9   0.0     0.002       4.5     190     233 ..     562     602 ..     494     610 .. 0.78
   4 ?    1.4   0.0     0.047   1.1e+02     198     233 ..     611     646 ..     607     684 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.9
                    EECCTCEEEEEETTSEEEEEEEETTC CS
  Nucleoporin_N 209 idssrrilytlsskgvirvydlsasn 234
                     ++  +   + +s++ irv+ l  ++
     CCE27071.1 374 FSEDGKMAAVGTSESYIRVWSLDGRS 399
                    55555666777999999999998554 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.28
                    T.CEEEEEETTSEEEEEEEETT CS
  Nucleoporin_N 213 r.rilytlsskgvirvydlsas 233
                    r ++l++ s++g +r + l+++
     CCE27071.1 454 RpKLLISCSADGHVRLWSLESW 475
                    4499***************987 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.002
                    -SSS--G----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETT CS
  Nucleoporin_N 190 ilpgvlsgasereeivqlridssrrilytlsskgvirvydlsas 233
                      + v+      ++i++l++ +  +il +++  g+i ++dl+ +
     CCE27071.1 562 ACARVFA--GHTDHITALECAPNGKILASADLAGNIFFWDLT-K 602
                    3444444..7889****************************9.3 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.047
                    ---GG-EEEEEEECCTCEEEEEETTSEEEEEEEETT CS
  Nucleoporin_N 198 asereeivqlridssrrilytlsskgvirvydlsas 233
                    ++ r  i+++  + ++  l +  ++g++r +d++ +
     CCE27071.1 611 GHGRGGIWSMSFSMESTVLASGGQDGTVRLWDVEEP 646
                    68999****************************954 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.22     5e+02     227     272 ..     376     417 ..     363     434 .. 0.75
   2 ?    0.3   0.0     0.094   2.1e+02     233     253 ..     458     478 ..     455     499 .. 0.85
   3 ?    2.5   0.0      0.02        45     232     255 ..     541     566 ..     510     581 .. 0.80
   4 ?    1.9   0.0      0.03        68     223     248 ..     620     644 ..     604     650 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.22
                 ..TTTEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSE CS
      Nup160 227 eigqtylfalsrdgkLrvWnlltgkclatidllrdeeaqdesssks 272
                 e + +++++ ++   +rvW+l+ g+ l+t++++  e +++++s+k+
  CCE27071.1 376 E-DGKMAAVGTSESYIRVWSLD-GRSLPTMNTN--EKDAKFNSRKL 417
                 4.7778888899999****987.5667888888..77777777775 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.094
                 EEEEETT-EEEEEETTTTEEE CS
      Nup160 233 lfalsrdgkLrvWnlltgkcl 253
                 l + s dg +r+W+l++  cl
  CCE27071.1 458 LISCSADGHVRLWSLESWACL 478
                 67889**********997776 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.02
                 EEEEEE..TT-EEEEEETTTTEEEEE CS
      Nup160 232 ylfals..rdgkLrvWnlltgkclat 255
                 y+f++s   d+ +r+W++ tg c+++
  CCE27071.1 541 YVFSASdeTDKSIRMWSVVTGACARV 566
                 66666533599************987 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.03
                 T.....TTTEEEEEETT-EEEEEETT CS
      Nup160 223 vavveigqtylfalsrdgkLrvWnll 248
                 +++++ ++t+l++  +dg++r+W+++
  CCE27071.1 620 MSFSM-ESTVLASGGQDGTVRLWDVE 644
                 45555.899999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 5561.45
//
Query:       CCE27072.1  [L=555]
Description: related to vacuolar protein sorting-associated protein VPS5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-86  287.8   5.0      1e-85  287.1   5.0    1.3  1  Vps5      Vps5 C terminal like
    1.1e-23   83.4   0.1    2.6e-23   82.1   0.0    1.7  2  PX        PX domain
     0.0014   18.4   7.4       0.02   14.6   2.8    2.7  2  BAR_3     BAR domain of APPL family
  ------ inclusion threshold ------
       0.02   14.0   1.5      0.033   13.3   1.5    1.4  1  BAR_2     Bin/amphiphysin/Rvs domain for vesicular traffickin
        1.7    8.3   5.6       0.41   10.4   2.4    1.6  2  DUF745    Protein of unknown function (DUF745)


Domain annotation for each model (and alignments):
>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.1   5.0   2.8e-89     1e-85      10     235 ..     290     514 ..     281     515 .. 0.97

  Alignments for each domain:
  == domain 1  score: 287.1 bits;  conditional E-value: 2.8e-89
        Vps5  10 ssisksstkfeEqDewFedkkqeldslesqLkkLykaiellvsqrkelasataelakslesLaslelskslsralsqlaeveerikellerqaeqdvlt 108
                  ++     kf EqD+wF+d+k +ld+le+qLk L ka+e++v qrk +a+a++++++sl++L+++els++ls  l++l++++ +i+++++rqa+qdvlt
  CCE27072.1 290 INVGR-GDKFVEQDDWFHDRKVYLDALENQLKGLLKAMETMVGQRKMMAEAAGDFSASLHALSTVELSPTLSGPLDALSDLQLTIRDVYDRQAQQDVLT 387
                 44444.78******************************************************************************************* PP

        Vps5 109 LgetideylrligsvksvfeqRvklwqkwqsaeqelskkkeqleKlekaaksqqdklqqlkkeveelerkvqeaekeFeeisetikkElerFeterved 207
                 +g++i+ey+rligs+k+ f+qR+k ++ w+ ae+el+kkk++++Kl +++ksqqd+l+q+++ev e e+kv++a+  Fe++++ ++ E++rFe+e+ved
  CCE27072.1 388 FGIIIEEYIRLIGSIKQSFTQRQKGFYAWHAAESELQKKKNTQDKLLRQGKSQQDRLNQMNAEVGESEKKVHQARLLFEDMGRLMRTEIDRFEKEKVED 486
                 *************************************************************************************************** PP

        Vps5 208 fknvvekyLesaiesqkevielWetfls 235
                 fk+ ve++Lesa+e+qke+ie Wetfl 
  CCE27072.1 487 FKSGVETFLESAVEAQKELIEKWETFLM 514
                 **************************97 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   7.3e-27   2.6e-23       3     112 ..     150     261 ..     148     262 .. 0.94
   2 ?   -3.1   0.0       2.1   7.6e+03      73      95 ..     477     499 ..     452     505 .. 0.72

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 7.3e-27
                 EEEEEEEEEEEETTSSEEEEEEEEEETTS.....SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHT CS
          PX   3 laqvsvleretsgskkhsyylyevelktg.....akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrlln 96 
                 +++++v ++ + g+  +s ++y+v+++t      + e++vkRrY+dF +L++ L  + p++++Pp P+k+ +g+   +d++f+e+rr++Le++L + + 
  CCE27072.1 150 SFHITVGDPVKIGDLTSSHIVYSVRTRTTsraykQPEFEVKRRYRDFLWLYNTLHANNPGCIVPPPPEKQAVGR---FDSNFVESRRAALEKMLSKAAA 245
                 5678888888889999999999999999999******************************************9...********************** PP

                 SCHHHHSHHHHHHHHS CS
          PX  97 hpelrnsevlteFLev 112
                 hp l+ + +l+ FLe+
  CCE27072.1 246 HPILQHDGDLKLFLES 261
                 **************97 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.1
                 CTTSHHHHHHHHHHHHHHHHHHH CS
          PX  73 rkkdeefiekrrkgLeeyLqrll 95 
                 +++++e +e  ++g e +L++ +
  CCE27072.1 477 DRFEKEKVEDFKSGVETFLESAV 499
                 56888888888888888888765 PP

>> BAR_3  BAR domain of APPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   2.8   5.6e-06      0.02      24     147 ..     312     430 ..     306     463 .. 0.61
   2 !    5.0   0.5    0.0047        17      89     128 ..     460     499 ..     455     511 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.6e-06
       BAR_3  24 leelekklkkllKlckrlieagkaysaaqkqfaqsLrelkkeskgdeetdesLkkfsellqelenehtilldqaqrsikkpLekFrkedlkevkekkkk 122
                 l+ le++lk llK+++ ++   k + +a   f+ sL+ l+    + ++    L  +s+l  ++ + ++   +qaq+ + +     ++e ++ +   k+ 
  CCE27072.1 312 LDALENQLKGLLKAMETMVGQRKMMAEAAGDFSASLHALSTVELSPTLS-GPLDALSDLQLTIRDVYD---RQAQQDVLTF-GIIIEEYIRLIGSIKQS 405
                 789************************************9988777655.455555554444444333...3444443333.44555555555555555 PP

       BAR_3 123 Fdkesekleaaleknaqlskkkkes 147
                 F + ++ ++a  +  ++l+kkk+ +
  CCE27072.1 406 FTQRQKGFYAWHAAESELQKKKNTQ 430
                 5555555555555555555553322 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0047
       BAR_3  89 ehtilldqaqrsikkpLekFrkedlkevkekkkkFdkese 128
                 + + l++ + r +++++++F ke+++ +k   + F  +  
  CCE27072.1 460 QARLLFEDMGRLMRTEIDRFEKEKVEDFKSGVETFLESAV 499
                 556799***********************99999976654 PP

>> BAR_2  Bin/amphiphysin/Rvs domain for vesicular trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.5   9.2e-06     0.033     152     237 ..     411     497 ..     334     524 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.2e-06
       BAR_2 152 kvleqvssaykeiaeakleqDslivkefnkkLeellnqefkkvhelrkkVeesRlkfd....tlrseveekekpeteeedkklleklEDe 237
                 k +  +  a+ e+++ k  qD+l+ ++  +  ++ lnq  ++v e  kkV+++Rl f+    ++r+e+++  ++e+ e++k+ +e+    
  CCE27072.1 411 KGFYAWHAAESELQKKKNTQDKLLRQGKSQ--QDRLNQMNAEVGESEKKVHQARLLFEdmgrLMRTEIDR-FEKEKVEDFKSGVETFLES 497
                 56889999****************998655..699**********************8444457888877.4444444344444433222 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.7     6e+03     108     130 ..     318     340 ..     312     348 .. 0.56
   2 ?   10.4   2.4   0.00011      0.41      44     137 ..     410     508 ..     401     515 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.7
      DUF745 108 alkallkaakenlenaeqvaaga 130
                 +lk llka+++ + + + +a+ a
  CCE27072.1 318 QLKGLLKAMETMVGQRKMMAEAA 340
                 45555555555555555444443 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00011
      DUF745  44 dkAlqAakAAeAaLaGKqqlveqleqelreaeavvqeekkslqsseanakaaakaakqaqqqlea....l.kallkaakenlenaeqvaagaqqelaek 137
                 +k + A  AAe  L+ K+   ++l ++ +  ++ +++ ++++ +se++++ a+   +++ + + +    + k+ ++ +k+ +e+  + a +aq+el ek
  CCE27072.1 410 QKGFYAWHAAESELQKKKNTQDKLLRQGKSQQDRLNQMNAEVGESEKKVHQARLLFEDMGRLMRTeidrFeKEKVEDFKSGVETFLESAVEAQKELIEK 508
                 56778999********************************************98877765554432111535689999999***************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1071  (0.0597356); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 4275.47
//
Query:       CCE27073.1  [L=184]
Description: related to ribosomal protein YmL36 precursor,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.056   12.6   1.3      0.075   12.1   1.3    1.1  1  Rep_4     Yeast trans-acting factor (REP1/REP2)


Domain annotation for each model (and alignments):
>> Rep_4  Yeast trans-acting factor (REP1/REP2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.3   4.2e-06     0.075     215     270 ..     107     163 ..      98     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.2e-06
       Rep_4 215 GfderiGdd.eedssvelqnvqevsslqeqeaqrapeadetlsqlidklveklqdea 270
                  f er G   +  +s e ++ qe +  qeq+a  ap  de   + +  l+ ++  e 
  CCE27073.1 107 AFRERFGRAfDASPSLEKEEGQEQEQEQEQKASAAPAEDEPAEDDFTDLITAYATEV 163
                 5789999888999*************************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1495.27
//
Query:       CCE27074.1  [L=211]
Description: uncharacterized protein CPUR_00546 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-32  112.5   0.0    2.3e-32  112.2   0.0    1.1  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.0   1.3e-36   2.3e-32       2     153 ..      41     203 ..      40     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 1.3e-36
                    TTS-EE-EEEEE.EETTEEEEEEESSEEEEETTT.TEEEEEEETTSHHHHHHHHHSEEEEEEEBCCG..HHHHHHTCS...SCCCCCCCCC.CCEE CS
  Flavin_Reduct   2 rrvaqpvavvttsvpptsplgatlssftslsldP.plvafslrlpsstadalkeagefvinllsesq..ealadafsqksgprtddksifa.gltw 93 
                    r +++pv+v+t+  +++ p+++t+ssftsl+l+P plv+f++++ps+t++al++++ef+i++l+ +   +a+ad+f++++++   d+     g t+
     CCE27074.1  41 RLLTNPVVVCTA-THEGVPRAMTMSSFTSLTLSPvPLVSFNIATPSRTLEALMASREFNIHVLAGDAsgAAVADHFTRGNTDGVFDT---IeGATY 132
                    7789********.88999**********************************************9654356*******766444455...436666 PP

                    ECT...CCCSEEE..TTCSEEEEEEEEEE......ECCTTEEEEEEEEEEEEESTTECTTBEECCCCCEEE CS
  Flavin_Reduct  94 ees...ptgapal..lgalasleCqvvgs......velgdhelfigeVvavkvgddadeepLlywrrryag 153
                    + +   p  ap++  +g l +l+C+++++      v++gdh +++g+V ++   ++ +e +L y++r+y+ 
     CCE27074.1 133 TVGeprPGSAPLIrgQGILRVLRCTLLRDgntdglVRVGDHVIVVGKVDEMMPVTKVKEFGLAYADRKYRL 203
                    6666688888***99999**********88999******************8888888779********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1640.38
//
Query:       CCE27075.1  [L=354]
Description: uncharacterized protein CPUR_00547 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00098   19.1   0.1       0.08   12.9   0.0    2.3  2  F-box-like_2  F-box-like domain


Domain annotation for each model (and alignments):
>> F-box-like_2  F-box-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   4.5e-06      0.08      25      44 ..      77      96 ..      56     123 .. 0.82
   2 !    3.9   0.1    0.0028        50      52      89 ..     200     244 ..     171     253 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.5e-06
  F-box-like_2 25 lPdellelifkgCkdpayep 44
                   P e+ +lif++C+d+ ++ 
    CCE27075.1 77 FPTEIHHLIFEHCYDDDLKS 96
                  7***************9987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0028
  F-box-like_2  52 ayrrkrkhieylLaqpkqcralkkl.......ltptskplWldel 89 
                   ++   +++i+ +Laq    r++kk+       + p+++   l++l
    CCE27075.1 200 RFVDRSYSILDALAQDSCYRTVKKVfhmqrddFYPRDEVWILRNL 244
                   55556899*******9999******54444445554444444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2812.83
//
Query:       CCE27076.1  [L=148]
Description: uncharacterized protein CPUR_00548 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1202.21
//
Query:       CCE27077.1  [L=704]
Description: probable heat shock protein 80 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.4e-223  741.9  31.1   5.7e-223  741.5  31.1    1.0  1  HSP90        Hsp90 protein
    6.8e-15   55.6   0.1    1.3e-14   54.7   0.1    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
      6e-10   39.1   0.2      6e-10   39.1   0.2    2.0  2  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
  ------ inclusion threshold ------
      0.011   15.8   3.3       0.13   12.3   0.1    2.5  2  DUF1676      Protein of unknown function (DUF1676)
      0.078   13.0   0.3        0.3   11.1   0.3    2.0  1  LOH1CR12     Tumour suppressor protein


Domain annotation for each model (and alignments):
>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  741.5  31.1  1.6e-226  5.7e-223       1     505 [.     182     688 ..     182     700 .. 0.95

  Alignments for each domain:
  == domain 1  score: 741.5 bits;  conditional E-value: 1.6e-226
                 GGGSHHHHHHHHHHCCTTSSS-EEEEEEEEXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX.....XXXXXXXXXXEEEEEEESXXSXGGGSXGGGS CS
       HSP90   1 eyleekklkelvkkySeFinfpiyllkekeeekeveeeeeeeeeeeee.eeeeakveeeeeeeee...kkktkkvketvkewellNkqkpiWlrkpkev 95 
                 +yl+e+k+ke+vkk+SeFi++piyl++eke+ekev++ee+eee +ee  +++++++ee+++e+ee   kkktkkvket+ e+e+lNkqkpiW+r+p+++
  CCE27077.1 182 DYLNESKIKEVVKKHSEFISYPIYLHVEKETEKEVPDEEAEEEVKEEGdDDKKPRIEEVDDEDEEkekKKKTKKVKETTIEEEELNKQKPIWTRNPQDI 280
                 7***********************************88877776665537778889977666655566999**************************** PP

                 XHHHHHHHHHHTTTTTSXXSEEEEEEEXSSSXEEEEEEEXSSXXTTTTTTTTTSXXTTEEEEETTEEEESXXTTSSXGGGTTXEEEEEESSSXSSSTHH CS
       HSP90  96 teeeYkeFYkslskdsedplavkhfsaegevefkaiLfvPkrapsdlfekykkkkknnikLYvrrVfitdefedllPkyLsFvkGvvdsddLPLNvsRE 194
                 t+eeY++FYksls+d+ed+l vkhfs+eg++ef+a+LfvPkrap+dlfe+  kk+knnikLYvrrVfitd++++l+P++LsFvkGvvds+dLPLN+sRE
  CCE27077.1 281 TQEEYASFYKSLSNDWEDHLGVKHFSVEGQLEFRAVLFVPKRAPFDLFET--KKTKNNIKLYVRRVFITDDATELIPEWLSFVKGVVDSEDLPLNLSRE 377
                 *************************************************8..799******************************************** PP

                 HHHTCHHHHHHHHHHHHHHHHHHHTSXHHH..HHTHHHHHHHHHHHHHHHXGGGHHHHHTTXEEEETTEEEEEEEHHHHHHHSXTTXXEEEEEEXSSHH CS
       HSP90 195 tlqqnkilkvikkklvrKvlemlkklaeekeeykkfykefsknlklGiiedsanrkklakLlrfksskseeeltsLedYvermkekqksiYyiageske 293
                 tlqqnki+kvikk+lv+K le+++++ae+ke+++kfy++fsknlklGi+eds+nr++lakLlrf+s+ks++e+tsL+dYv+rm e+qk++Yyi+ges++
  CCE27077.1 378 TLQQNKIMKVIKKNLVKKSLELFTEIAEDKEQFDKFYSAFSKNLKLGIHEDSQNRQQLAKLLRFNSTKSGDEMTSLSDYVTRMPEHQKNMYYITGESIK 476
                 *************************************************************************************************** PP

                 HHHTSGGGHHHHHTTXXEEEEXSTTHHHHHHTXSEETTEEEEETTBSTXXXXXXHHHHHHHHHHHHHHHHHHHHHHHTTTTTESEEEEXSSXSSXSEEE CS
       HSP90 294 evekspflerlkkkgyevlylvdpiDeyvvqqlkeyegkklvnvakegleleeeeeekkkkeelkkkfeeltkllkevlkdkvekvkvserlvdsPcvl 392
                 +v+kspfl++lk+kg+evl+lvdpiDey+++qlke+e+kklv+++k+ +elee+eeekk++e+++k+fe+l+k lk+vl++kvekv+vs++l  sPc++
  CCE27077.1 477 AVSKSPFLDTLKDKGFEVLFLVDPIDEYAMTQLKEFEDKKLVDITKD-FELEETEEEKKAREDEEKEFESLAKSLKNVLGEKVEKVVVSHKLGLSPCAI 574
                 **********************************************7.9************************************************** PP

                 EBXTTSXXHHHHHHHHHHHHHHHSSTSSSSSXEEEEEXTTSHHHHHHHHHHHHTTT.XHHHHHHHHHHHHHHHHHTTXXXSXHHHHHHHHHHHHTTTTH CS
       HSP90 393 vtseygwsanmerimkaqalrdkskssymsskktleinprhpiikeLkkkveedke.deeakdlaellyetallesGfsledpasfakrierllklslg 490
                  t+++gwsanmerimkaqalrd+s+ssymsskkt+ei p+ pii+eLkkkve+d e d+++k++++ll+et+ll sGf++e+pa fa+ri++l++l+l+
  CCE27077.1 575 RTGQFGWSANMERIMKAQALRDTSMSSYMSSKKTFEISPKSPIIQELKKKVEADGEnDRTVKSIVQLLFETSLLVSGFTIEEPAGFAERIHKLVQLGLN 673
                 ****************************************************9854389**************************************** PP

                 XXSTTTTTTGGGXGG CS
       HSP90 491 idedeeveeeeevee 505
                 i+ed+++ +e  +e+
  CCE27077.1 674 IEEDDSAPAEVVAED 688
                 *88888777665554 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.1   3.5e-18   1.3e-14       1     111 [.      25     179 ..      25     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 3.5e-18
                 EHHHHHHHHHHHHHHHHHHH........HS..TTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT.......GTCS.TTCH.....HCSTCHTSTSSSH CS
   HATPase_c   1 gdekrLrqiisnlvdNavkf........at..kageieveikaseddlvisveDnGiGipkedlk.......klfe.kfsq.....ddstkrggggtGl 76 
                 ++e++Lr+++sn++d+++k         ++  +++++++ + ++++ ++++++D+GiG++k+dl        ++++  f++     +d +++g++g+G+
  CCE27077.1  25 NKEIFLRELVSNASDALDKVrykalsdpSQldSGKDLRIDLIPNKEAKTLTIRDTGIGMTKADLVnnlgtiaRSGTkQFMEaltagADVSMIGQFGVGF 123
                 5899****************99988877333577799999998778**************************999999999998565666666666665 PP

                 .HHHHH.............HH.HHH.HTTTEEEEEEET.....TTEEEEEEEEESS CS
   HATPase_c  77 .Glsiv.............kk.lve.lmgGeiwvesep.....grGttftftlple 111
                  ++++v             ++ ++e   gG+++++s+      grGt+++++l+ e
  CCE27077.1 124 ySAYLVadkvtvisknnddEQyIWEsSAGGTFNIISDTvneplGRGTSIILHLKDE 179
                 555555999999999999966799988*******666666679**********987 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.2   1.7e-13     6e-10       1      99 [.      23     144 ..      23     162 .. 0.83
   2 ?   -4.3   0.5         4   1.4e+04     109     123 ..     249     263 ..     240     271 .. 0.48

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 1.7e-13
  HATPase_c_3   1 ysl.ekAlaelvdNsldAdaen................vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakr.......kstslGkk 73 
                  ys+ e+ l elv N+ dA  +                   i +  n+ ++++++i+D G Gm++++l n l ++a+s +++         +   +G++
   CCE27077.1  23 YSNkEIFLRELVSNASDALDKVrykalsdpsqldsgkdLRIDLIPNK-EAKTLTIRDTGIGMTKADLVNNLgTIARSGTKQFMealtagaDVSMIGQF 119
                  566688899*********88888999************777777765.579******************7747999988855433333334555**** PP

  HATPase_c_3  74 GiGlklAslslgkkltvitkkegess 99 
                  G+G + ++  +++k+tvi+k++++++
   CCE27077.1 120 GVG-FYSAYLVADKVTVISKNNDDEQ 144
                  ***.999999**********997765 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 4
  HATPase_c_3 109 dkenekvleeltvee 123
                  +k+++k+++e+t+ee
   CCE27077.1 249 KKKKTKKVKETTIEE 263
                  333344444444443 PP

>> DUF1676  Protein of unknown function (DUF1676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.4     0.018        66      64     120 ..     179     255 ..     126     261 .. 0.67
   2 ?   12.3   0.1   3.7e-05      0.13      14      85 ..     504     569 ..     498     593 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.018
     DUF1676  64 eelekllleklerflkshslevklpeeldaegaeesisrsleedne.........egR...........kkkkkkkk 120
                 e+ + l  +k+++++k hs  ++ p  l +e+++e+  +++e+++e         + R            kkkk kk
  CCE27077.1 179 EQADYLNESKIKEVVKKHSEFISYPIYLHVEKETEKEVPDEEAEEEvkeegdddkKPRieevddedeekEKKKKTKK 255
                 56666666788888889998889998888888888888888888778887777773334444555543222223333 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.7e-05
     DUF1676  14 kalrfldrlldkdeielvdgvslvrneeaasasskeeeeelsreeeeareeelekllleklerflkshslev 85 
                  a++ l+++ dk+ ++++ + +l  +ee+++      ++e++++e e+  ++l++ l ek+e+++ sh+l +
  CCE27077.1 504 YAMTQLKEFEDKKLVDITKDFELEETEEEKK------AREDEEKEFESLAKSLKNVLGEKVEKVVVSHKLGL 569
                 5778889999999999999999999887743......34445556666669*****************9966 PP

>> LOH1CR12  Tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   8.3e-05       0.3      48      89 ..     378     420 ..     368     435 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.3e-05
    LOH1CR12  48 Aadqaklverike.vdakiitllaelrekqkqyasyaealskv 89 
                   +q+k+++ ik+ + +k  +l++e+ e ++q++++  a+sk 
  CCE27077.1 378 TLQQNKIMKVIKKnLVKKSLELFTEIAEDKEQFDKFYSAFSKN 420
                 568******997536777789*******************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1978  (0.110324); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 4871.36
//
Query:       CCE27078.1  [L=600]
Description: related to acyl-CoA sterol acyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-42  145.3  18.9    1.7e-40  139.5  13.6    2.3  2  MBOAT     MBOAT, membrane-bound O-acyltransferase family
     0.0064   16.7   2.2      0.021   15.1   2.2    1.8  1  MBOAT_2   Membrane bound O-acyl transferase family
  ------ inclusion threshold ------
      0.052   14.2   1.7        2.2    8.9   0.2    2.6  2  Pex14_N   Peroxisomal membrane anchor protein (Pex14p) conser


Domain annotation for each model (and alignments):
>> MBOAT  MBOAT, membrane-bound O-acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2   0.00016      0.96      21      98 ..     177     244 ..     116     251 .. 0.79
   2 !  139.5  13.6   2.8e-44   1.7e-40      75     347 ..     342     598 ..     332     599 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00016
       MBOAT  21 svltlqlialvlslydgleketeltedvkellklllisyfvvgflelklhslslvfrklasaallsklpslleylgYv 98 
                  + +   i ++++   + +  ++++++++++++ + + +           ++s vf+ l++ + l+k++s+++y+g +
  CCE27078.1 177 RNAPSGGILTWARGGMAIQSIYQGFWLAFWIAVPFVLEWT----------WTSQVFLLLHTMVMLMKMHSYAFYNGHL 244
                 4445555555555555666667777777777777665555..........77***********************976 PP

  == domain 2  score: 139.5 bits;  conditional E-value: 2.8e-44
       MBOAT  75 vfrklasaallsklpslleylgYvffyplllvGPilsyseymsfvesplsrllytakrnfavalyalflgltylilieyvlskicakdftifkmlssaq 173
                 ++r+l+s   + ++p  l+ ++Y+++   ll+ P+l+y+  ++++++ ++++++     +a++ +++ l+ +++ +i  vl +   +    +++  + +
  CCE27078.1 342 LARELTSPMGNTTYPLNLTWANYIDY---LLC-PTLCYE--LEYPRTAQINWTSLNAKILATFGCIFLLTVVSEEFILPVLVDAQRRLTPLPPYTHTPS 434
                 6899999999****************...777.******..9**********99976677777777767666666666666666666666666665544 PP

       MBOAT 174 llmrsvimrilllllllfllifdflglwlvalgedilsGlgvng.....arldrvadrniygdwenavsfsefwraWNipvhkWLlryvYkplgskkfk 267
                 + +   + +il+   +++ll++ +l       ++++++ +++ +     a+ +r+adr++y dw+n++++ ef+r+WN+pv+ +L+r+vY  +   + +
  CCE27078.1 435 ISE---ALLILAE-SISWLLFPFML-------TFLLIFLVIFEYilgafAEITRFADRHFYADWWNSTDWMEFSREWNVPVYSFLRRHVYSAS---RPH 519
                 432...2222222.23333333222.......222333333333334559******************************************9...567 PP

       MBOAT 268 lnkslatlatFlfsAvwHglalgyliwfvlrvllllveklimrlvalsnlkfdrrrailsnvifwlgaflgpslalllyl 347
                   k latl+tFl+sA+ H++ +  +i+++ r++ + +++++ ++v l+++kf r+r+ l nv fw++++lg sl++ ly+
  CCE27078.1 520 TGKMLATLITFLISAFMHEIVM-ACISKKIRGYGFVCQMMQLPIVMLQRTKFIRARKTLNNVCFWISMILGLSLMCALYV 598
                 99********************.*******************************************************97 PP

>> MBOAT_2  Membrane bound O-acyl transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.2   3.4e-06     0.021      15      72 ..     485     546 ..     472     558 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.4e-06
     MBOAT_2  15 rrfWgrf.WHqlfrrglkstakkilrlllg.sk..larylqllvaFllSGllHaagdytqla 72 
                 +++W+ + W ++ r++ + + +++ r++ + s   + ++l++l++Fl+S+++H+++   +++
  CCE27078.1 485 ADWWNSTdWMEFSREWNVPVYSFLRRHVYSaSRphTGKMLATLITFLISAFMHEIVMACISK 546
                 45664332666677777767777767776652267899****************99887776 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2   0.00037       2.2      57     135 ..      27     117 ..      13     133 .. 0.41
   2 ?    4.0   0.1     0.012        73     120     156 ..     379     415 ..     246     416 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00037
     Pex14_N  57 vaassaseqa..............qeesasssatpqpqaasqtsqsspspsppaqqqqqqy...........rpPivtypefltkppkppppPlrtwrd 130
                 +++++++e++              ++ ++s ++tp p++a ++++s  s           +           + P + y   l +  +  +  +r++++
  CCE27078.1  27 AHDTPPMERSesdahtgasaesppASGPTSGQSTPIPENAPPSTKSLCS-----------ArkhiraeqkrrIFPTIEYASRLSHFDP--QSDYRDFHG 112
                 2223333111111111111112222222333333333333222222222...........0333344444457788999877776555..667777777 PP

     Pex14_N 131 llita 135
                 ++++ 
  CCE27078.1 113 FFNLF 117
                 76643 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.012
     Pex14_N 120 ppppPlrtwrdllitatalaglgaglyglskryiaPm 156
                  p + +++w +l   + a+ g  ++l  +s+ +i P 
  CCE27078.1 379 YPRTAQINWTSLNAKILATFGCIFLLTVVSEEFILPV 415
                 35567779***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4430.73
//
Query:       CCE27079.1  [L=470]
Description: probable cellulase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-48  166.0   1.4    1.6e-48  165.6   1.4    1.1  1  Cellulase  Cellulase (glycosyl hydrolase family 5)
    2.7e-19   68.8  27.1    5.1e-12   45.5   7.6    3.2  4  CBM_1      Fungal cellulose binding domain
    1.4e-05   25.3   4.3      0.017   15.4   0.4    2.5  2  Toxin_7    Toxin 7


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.6   1.4   2.7e-52   1.6e-48       5     280 ..     165     439 ..     161     440 .. 0.88

  Alignments for each domain:
  == domain 1  score: 165.6 bits;  conditional E-value: 2.7e-52
                 SEEEEGEEECET............TSCGG..SHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTTC CS
   Cellulase   5 gkpvnlkglsts............wgnpy..ttkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHseegwl 89 
                 g + +++g+s s             g++y  +  + i  + ++g+n++R+p+  +++ +++ +   + ++l++++e+v++++++g ++ild H++    
  CCE27079.1 165 GGKLKWFGVSESaaefapdkipgvVGQDYsfPDIQSINGLIKEGYNIFRIPFLLERMASPSLSSPLQTDYLNSITEIVNAITKQGKHAILDAHNY---- 259
                 5555666666666666666666667778888666666777777***************9999999999**************************5.... PP

                 SSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTS.SEEEEECHHHHT.......BHH CS
   Cellulase  90 tkadgnssedtaeeffkklwtqiAerykkndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpn.rliivegnswsg.......nld 180
                   +++n+++ t ++ f+++w+++A ++ +++ +vif+l NE+h+ ++         + v +++++ i+ +Ra+g++ ++i+ egns+sg       n +
  CCE27079.1 260 --GRYNGNIITDTQAFQTFWKNLAGKF-SDNANVIFDLNNEYHDIEQ---------TLVLQLNQAGIDGVRASGAKtQYIFAEGNSYSGawtwtkvNDN 346
                 ..677**********************.****************443.........4689**************************8886666666444 PP

                 HHHCTSGSSSSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSHHHHHHHHHHHHHHHHTTTEEEEEEESS CS
   Cellulase 181 gavlndPndsqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgsnadgdlakeeaekwldylkekgiswiyWslnp 279
                 +++l dP   +++liy++H+Y + d ++  +  d++++t+ ++rl+da+k+l+++++  +igE++g+ +d+  +k++ + +ld +++++ +w++  ++ 
  CCE27079.1 347 QKALVDP---ENKLIYEMHQYLDADGSGSGT--DCVSSTIGKERLADATKWLRDNNKVGVIGEYAGGANDQ--CKAAVAGMLDHMQDNSDVWMGALWWG 438
                 4466688...79*************988777..**************************************..*********************99997 PP

                 S CS
   Cellulase 280 k 280
                 +
  CCE27079.1 439 A 439
                 5 PP

>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   7.6   8.5e-16   5.1e-12       2      29 .]      21      48 ..      20      48 .. 0.98
   2 !   37.2  11.5   3.3e-13     2e-09       2      29 .]      65      92 ..      64      92 .. 0.98
   3 ?   -3.9   0.6       2.4   1.5e+04       7      15 ..     331     339 ..     331     339 .. 0.81
   4 ?   -3.3   0.2       1.6   9.3e+03      14      18 ..     374     378 ..     372     380 .. 0.50

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 8.5e-16
       CBM_1  2 wgQCGGigWtGpTtCvsgatCtyqNeyY 29
                +++CGG gW+G+TtCv+g+tCt++N++Y
  CCE27079.1 21 YERCGGRGWNGSTTCVAGFTCTVSNDWY 48
                9*************************** PP

  == domain 2  score: 37.2 bits;  conditional E-value: 3.3e-13
       CBM_1  2 wgQCGGigWtGpTtCvsgatCtyqNeyY 29
                +gQCGG gW+G T+C++g+ C+  N +Y
  CCE27079.1 65 YGQCGGRGWNGTTVCTDGYRCKFINGWY 92
                9*************************** PP

  == domain 3  score: -3.9 bits;  conditional E-value: 2.4
       CBM_1   7 GigWtGpTt 15 
                 G++++G++t
  CCE27079.1 331 GNSYSGAWT 339
                 889999875 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.6
       CBM_1  14 TtCvs 18 
                 T Cvs
  CCE27079.1 374 TDCVS 378
                 45555 PP

>> Toxin_7  Toxin 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.3   7.1e-05      0.42      16      34 .]      34      52 ..      29      52 .. 0.92
   2 !   15.4   0.4   2.8e-06     0.017      17      34 .]      79      96 ..      74      96 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.1e-05
     Toxin_7 16 rCCsGlkCkelsipdsiCl 34
                 C +G++C+  + + s Cl
  CCE27079.1 34 TCVAGFTCTVSNDWYSQCL 52
                5*****************7 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.8e-06
     Toxin_7 17 CCsGlkCkelsipdsiCl 34
                C +G++Ck+ + + s C+
  CCE27079.1 79 CTDGYRCKFINGWYSQCV 96
                99***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3575.66
//
Query:       CCE27080.1  [L=705]
Description: uncharacterized protein CPUR_00552 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-08   34.4   0.1    2.3e-08   33.8   0.1    1.3  1  CHAT      CHAT domain


Domain annotation for each model (and alignments):
>> CHAT  CHAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   1.3e-12   2.3e-08     139     270 ..     267     413 ..     161     446 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.3e-12
                 x.....x.xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CHAT 139 l.....s.rryrvvHfatHgvfn..anpplqsglvlsaense........edglLtaeeilelnldg..aelVvLsACqtglgevidgegvlgLarall 219
                 l     +   ++++H+  Hg     +   + + l+++ ++          +++l +ae+++e  l++  +e VvL+AC ++        +   La+ +l
  CCE27080.1 267 LnlrseQkVTFNLIHLDLHGRIMrdEAGVMVPWLLFARKHVPaemdfsipQTRLAKAEDVAE-VLSRfrIENVVLNACLSAYN---RSSSATNLAHLFL 361
                 344433336777777777777765555566667777654444888888888999999*****.444445************66...6689999****** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
        CHAT 220 laGarsviaslwpVddeatalLmkrfyqnlla.glskaeALreaqlkllsgk 270
                 + G+ +v a+ + V  ++  + +++fy nll  gl+ + A ++a+ +l++++
  CCE27080.1 362 RYGISNVSAMWFYVHWKTVTTYVHAFYDNLLVnGLDFHIAAQRAREALRQQP 413
                 *******************************999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 5448.37
//
Query:       CCE27081.1  [L=309]
Description: uncharacterized protein CPUR_00553 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-67  227.0   1.6    3.2e-67  226.8   1.6    1.1  1  ELYS      Nuclear pore complex assembly


Domain annotation for each model (and alignments):
>> ELYS  Nuclear pore complex assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.8   1.6   1.8e-71   3.2e-67       1     219 [.      38     257 ..      38     258 .. 0.97

  Alignments for each domain:
  == domain 1  score: 226.8 bits;  conditional E-value: 1.8e-71
        ELYS   1 kLFiDrllsalaiqkdsgeaaklYPPkslqalrdlllqigsssevdllaKqslllYlLlDldasseeselaedFaaafglprklvllvqglwlLDhgef 99 
                 +LFiDr+l+al+i +     a+ YPPk+++alr+l+++i++ + ++l++K+ +++Y+LlD+d+++++ +++e+Fa+  g+p +++l+++glw+LD++++
  CCE27081.1  38 TLFIDRVLQALGIVR-----ARAYPPKNETALRQLHQLICD-AGMALHHKLTIFYYMLLDYDDMNNDAHVSENFASVSGMPANYQLFMKGLWYLDRQHY 130
                 69**********776.....59*******************.89******************************************************* PP

        ELYS 100 eealelLtdPslspkefadkilqvLler...gdaslalaylravkpplssseavealfvllargsvteAfsfqRslsdkekreelleelvelclee... 192
                 ++ale+ ++Psl p +fad+i+ +L++r   +d++lal+y++ v+p l+++ea+e lf ++a+++vteA++++R ++++ +re+l++++v+++l+    
  CCE27081.1 131 SRALEYVAHPSLKP-DFADDIIITLVKRasdNDYELALSYFNSVQPILKTQEALELLFDAMAKTNVTEALMYSRAQPQH-TREQLFRRWVSAVLDGsrt 227
                 ************99.***************************************************************9.******************* PP

        ELYS 193 ...aarklkeLlelpldeeEekllekfLls 219
                     +++++eL+ +pld+ Ee+++e++L+ 
  CCE27081.1 228 gedLSSRASELAFIPLDASEERWFEEYLTA 257
                 **95699*********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2210.81
//
Query:       CCE27082.1  [L=1509]
Description: probable SMC4-Stable Maintenance of Chromosomes [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-75  251.1  13.3    6.6e-74  248.0  13.3    2.3  1  SMC_N          RecF/RecN/SMC N terminal domain
    2.7e-24   85.7   0.0    1.2e-23   83.6   0.0    2.3  1  SMC_hinge      SMC proteins Flexible Hinge Domain
    1.5e-12   48.0   0.4    4.1e-05   23.5   0.0    3.2  3  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    0.00031   20.4   0.0    0.00067   19.4   0.0    1.5  1  AAA_29         P-loop containing region of AAA domain
    0.00078   19.5   5.6    0.00078   19.5   5.6    8.9  9  TPR_MLP1_2     TPR/MLP1/MLP2-like protein
     0.0076   16.4   6.5     0.0076   16.4   6.5    7.2  7  Fib_alpha      Fibrinogen alpha/beta chain family
     0.0082   16.7  12.0     0.0082   16.7  12.0    8.0  6  APG6_N         Apg6 coiled-coil region
     0.0089   16.2   7.0     0.0089   16.2   7.0    8.5  9  Tropomyosin_1  Tropomyosin like
     0.0091   15.9   2.5       0.21   11.5   0.2    3.2  2  Shugoshin_N    Shugoshin N-terminal coiled-coil region
  ------ inclusion threshold ------
      0.016   15.0   0.5      0.016   15.0   0.5   10.0 12  DivIC          Septum formation initiator
        1.3    9.6   0.0        1.3    9.6   0.0    6.6  2  ABC_tran       ABC transporter


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.0  13.3     4e-77   6.6e-74       2     219 ..     218    1470 ..     217    1471 .. 0.99

  Alignments for each domain:
  == domain 1  score: 248.0 bits;  conditional E-value: 4e-77
                  EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEE....EETTEESSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx RF
       SMC_N    2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitf....dnedkklkiek 94  
                  l++l+++nFksyag++ ++pf+ sf+++vGpNGSGKsn++d++lFv+G+r++ k+r+ k+s+lih+s+++++++ +eve++f    d++d  ++i +
  CCE27082.1  218 LTHLVLNNFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVFGFRAS-KMRQGKISALIHNSAQHPNLEYCEVEVHFqeviDKPDGPETIPD 313 
                  789**********************************************988.*****************************77777777779**** PP

                  SCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT........................................................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................ RF
       SMC_N   95 eevsisrrvkrkgeseykingkevtkkevsellesagiske........................................................ 135 
                  + + isr+++r+++s+y+ingk   ++ v+ ll+++g++ +                                                        
  CCE27082.1  314 STLIISRKAFRNNTSKYFINGKGSDFTTVTTLLKDHGVDLDhkrflilqgevesiaqmkskaanehedglleylediigtskykapieesaaevetl 410 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27082.1  411 nevcaeksgrvqhvekeknsledkkdkalafvqeeneltlkqsalyqifihecngnitvtkeavsqmqalldeelrihqgseqfikdlekqysmgsk 507 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27082.1  508 evevhekqtqalvkelvsfeqervkcdekrkflvdkrkklqrvidnaqnaindadetieennrdieartrevakleeqvkveeaelarirdslkgkt 604 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27082.1  605 qafsdkitvkqkaiepwmekinqkqsqiavaeselnilkekanagavamgelegkvasiekegraktqelkacevertkleeeankmaselailaeq 701 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27082.1  702 epkmrakvsnyrqkadearsnlastqargnvlaalvrmkesgridgfhgrlgnlgtihqkydvavstacsaldnfvtesvesgqqcieylrknnlgr 798 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27082.1  799 gnficldklkardmspiqtpenaprlfdlvkaedkfrpafyhamqdtlvasdlaqanriaygakrwrvvtlagelidksgtmsgggstvkkglmssk 895 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27082.1  896 ivadistehvtkleqerdkwegtlqelhdyqrecestmkdlktkipeletkmqkirldiescmrnlsdtkkrikevsqehqpsasdstriaalekgi 992 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27082.1  993 sklnaeieqlrsetasveaeikalqdkimevggeklrsqrakvdglkaeintnteemsnaevrrvktekkkiklaqditkankdhelaaqdlqgleg 1089
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27082.1 1090 dasnqgeraqelktqvkeaetllgskreqlrafkqelddktaelnksraaeietrnkleenqkilqenekrlrywhdkhsklvlqniedligasspa 1186
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27082.1 1187 ekaaaaagktrqqkkpktesldsddddqdvemtdagadetedtsmvdadtdndptseaqpqntlyelpqytpdelagmskgtlkgeiaaleertqnv 1283
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE27082.1 1284 nvdigvlaeyrrrveehaarssdlqsaisqrdaakkrcddlrrlrlegfmegfstislrlkemyqmitmggnaelelvdsldpfsegilfsvmppkk 1380
                  ************************************************************************************************* PP

                  ......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEEEETTEE CS
                  ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtkvengvs 219 
                        +LSgGektL++laL+fA++++kp+ply++DeidaaLD++nv++va+++ke++knaQfivislr++m+e a +lvgv+kv++ ++
  CCE27082.1 1381 swknisNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELAARLVGVYKVNHMTK 1470
                  ************************************************************************************887765 PP

>> SMC_hinge  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   7.7e-27   1.2e-23       2     117 .]     746     858 ..     745     858 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 7.7e-27
   SMC_hinge   2 kgvlGrladlievdegyekAveaalgnrlqalvvedeetakkiieflkkknagratflpldrikqknkadgandknsgavplidlvevddelrkalryl 100
                  g++Grl++l ++ ++y++Av++a+  +l+++v+e+ e+ +++ie+l+k+n+gr +f+ ld++k +  ++ ++++  +a +l+dlv+ +d++r+a++++
  CCE27082.1 746 DGFHGRLGNLGTIHQKYDVAVSTACS-ALDNFVTESVESGQQCIEYLRKNNLGRGNFICLDKLKARDMSPIQTPE--NAPRLFDLVKAEDKFRPAFYHA 841
                 589********************995.6********************************************999..6********************* PP

   SMC_hinge 101 lgdtlvvdsldeAeela 117
                 ++dtlv+++l++A+++a
  CCE27082.1 842 MQDTLVASDLAQANRIA 858
                 **************986 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.5e-08   4.1e-05       3      34 ..     244     274 ..     242     409 .. 0.83
   2 ?   -2.1   0.1       1.6   2.7e+03      97     157 ..    1132    1192 ..    1108    1271 .. 0.62
   3 !   21.1   0.0   1.4e-07   0.00022     233     296 ..    1384    1447 ..    1312    1447 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.5e-08
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltd 34 
                  ++GpNgsGKSn++d l +++++ r +++++ 
  CCE27082.1 244 SVVGPNGSGKSNVIDSLLFVFGF-RASKMRQG 274
                 58*******************96.33333333 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.6
      AAA_21   97 gllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllll 157 
                   l + + +++e+ ++  e + i      + ++++ + +   lq++++l+  +s+a++++  
  CCE27082.1 1132 ELNKSRAAEIETRNKLEENQKILQENEKRLRYWHDKHSKLVLQNIEDLIGASSPAEKAAAA 1192
                  4556666667777777777777777777777777777777777777777777776666553 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 1.4e-07
      AAA_21  233 parelSdGtkrll..alltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296 
                  ++++lS G k l   al+ al+   +  +l++ DE+++ L+ + ++ ++  +ke ++ +aQ+i+ +
  CCE27082.1 1384 NISNLSGGEKTLSslALVFALHHYKPT-PLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVIS 1447
                  67899*******655888888888888.************************99999.9****976 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   4.1e-07   0.00067       1      46 [.     218     264 ..     218     270 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.1e-07
      AAA_29   1 LkrlqlvNWgtfdg.htieidlkgatlltGpsGsGKSTllDAiqalL 46 
                 L++l l N  ++ g +++    +++  ++Gp+GsGKS ++D++ +++
  CCE27082.1 218 LTHLVLNNFKSYAGrQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF 264
                 6788999999999987766555668*****************99885 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   6.2       3.3   5.3e+03      27      99 ..     361     436 ..     355     453 .. 0.64
   2 ?   -1.0   3.9         1   1.7e+03      44     107 ..     395     462 ..     392     473 .. 0.71
   3 ?   -2.7  13.6       3.5   5.7e+03       2     105 ..     543     643 ..     542     650 .. 0.89
   4 ?    5.0   0.4     0.015        24      84     117 ..     905     938 ..     899     940 .. 0.91
   5 !   19.5   5.6   4.8e-07   0.00078       5      94 ..     928    1020 ..     924    1026 .. 0.87
   6 ?   -0.0   0.5      0.52   8.5e+02      58      87 ..    1027    1056 ..    1024    1067 .. 0.63
   7 !    8.3  18.2    0.0014       2.2       3     101 ..    1063    1161 ..    1059    1164 .. 0.93
   8 ?   -2.3   0.0       2.6   4.3e+03      98     116 ..    1266    1284 ..    1263    1286 .. 0.84
   9 ?   -0.1   0.5      0.54   8.8e+02      44      77 ..    1292    1325 ..    1274    1328 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.3
  TPR_MLP1_2  27 lqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesak...aeleeseesweeqke 99 
                 lq ++e+ a+  ++a +  e  l++  ed+   +++++ ++e  ae+++l++   + +   + +e++++s+e +k+
  CCE27082.1 361 LQGEVESIAQMKSKAANEHEDGLLEYLEDIIGTSKYKAPIEESAAEVETLNEVCAEKSgrvQHVEKEKNSLEDKKD 436
                 6677777777778888888888888888888888888888888888877776544443011334444444444443 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1
  TPR_MLP1_2  44 kYerelvkhaedvkelqalreel....nelkaeiaelkaeaesakaeleeseesweeqkeelekelse 107
                 kY+  + + a++v++l+++ +e     +++++e ++l+++ ++a a ++e+ e   +q   ++  + e
  CCE27082.1 395 KYKAPIEESAAEVETLNEVCAEKsgrvQHVEKEKNSLEDKKDKALAFVQEENELTLKQSALYQIFIHE 462
                 66666667777788887777665555588888888888888888888887777777777666655555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.5
  TPR_MLP1_2   2 elksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkee 100
                 + k+l+  i+++++ +++a++++++  +d+e+ ++++++ ++   +  v+ ae ++   +l+ + +   ++i+  +++ e   +++++++++++  ++e
  CCE27082.1 543 KRKKLQRVIDNAQNAINDADETIEENNRDIEARTREVAKLEE---QVKVEEAELARIRDSLKGKTQAFSDKITVKQKAIEPWMEKINQKQSQIAVAESE 638
                 67899999*****************************99999...788899999999999999999999999999999999999999999999999888 PP

  TPR_MLP1_2 101 lekel 105
                 l   +
  CCE27082.1 639 LNILK 643
                 86544 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.015
  TPR_MLP1_2  84 kaeleeseesweeqkeelekelselekriedlne 117
                  ++le+++ +we + +el +  +e+e+ ++dl++
  CCE27082.1 905 VTKLEQERDKWEGTLQELHDYQRECESTMKDLKT 938
                 5789***************************986 PP

  == domain 5  score: 19.5 bits;  conditional E-value: 4.8e-07
  TPR_MLP1_2    5 sleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYe...relvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesw 94  
                  + e+++k+lk+++ e+e+k+qk++ d+e+  + +++ +++ +   +e +  a+d++ ++al + +++l+aei++l++e  s++ae+++ + ++
  CCE27082.1  928 ECESTMKDLKTKIPELETKMQKIRLDIESCMRNLSDTKKRIKevsQEHQPSASDSTRIAALEKGISKLNAEIEQLRSETASVEAEIKALQDKI 1020
                  67899999******************99999999988887651116777789**********************************9988765 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 0.52
  TPR_MLP1_2   58 elqalreelnelkaeiaelkaeaesakael 87  
                  +l++ r++++ lkaei++ ++e  +a+   
  CCE27082.1 1027 KLRSQRAKVDGLKAEINTNTEEMSNAEVRR 1056
                  566666677777777777777766666544 PP

  == domain 7  score: 8.3 bits;  conditional E-value: 0.0014
  TPR_MLP1_2    3 lksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqke 99  
                  + +l ++i++++++ e a+++lq l+ d  +q e+a+e + + ++  ++  +  ++l+a+++el++ +ae+++ +a+  +++++lee+++ ++e ++
  CCE27082.1 1063 KIKLAQDITKANKDHELAAQDLQGLEGDASNQGERAQELKTQVKEAETLLGSKREQLRAFKQELDDKTAELNKSRAAEIETRNKLEENQKILQENEK 1159
                  5578899999***********************************99***********************************************999 PP

  TPR_MLP1_2  100 el 101 
                  +l
  CCE27082.1 1160 RL 1161
                  98 PP

  == domain 8  score: -2.3 bits;  conditional E-value: 2.6
  TPR_MLP1_2   98 keelekelselekriedln 116 
                  k +l+ e++ le+r +++n
  CCE27082.1 1266 KGTLKGEIAALEERTQNVN 1284
                  7789999999999999887 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 0.54
  TPR_MLP1_2   44 kYerelvkhaedvkelqalreelnelkaeiaelk 77  
                   Y r + +ha+ + +lq++ ++ + +k++  +l+
  CCE27082.1 1292 EYRRRVEEHAARSSDLQSAISQRDAAKKRCDDLR 1325
                  5788888888888888888887777777776665 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.3      0.17   2.7e+02      65     130 ..     369     433 ..     357     436 .. 0.78
   2 ?    0.6   7.6      0.36   5.8e+02      33     127 ..     470     567 ..     464     571 .. 0.82
   3 !    7.7   3.7    0.0024       3.9      31     129 ..     566     664 ..     560     670 .. 0.86
   4 !   16.4   6.5   4.7e-06    0.0076      26     126 ..     922    1021 ..     917    1026 .. 0.95
   5 ?   -1.1   3.0       1.2     2e+03      67     127 ..    1044    1107 ..    1026    1130 .. 0.64
   6 ?   -1.9   6.1       2.1   3.4e+03      42     118 ..    1082    1161 ..    1065    1172 .. 0.67
   7 ?   -1.7   0.0       1.9   3.1e+03      78     127 ..    1279    1313 ..    1250    1323 .. 0.52

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  65 lrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqker 130
                  + k k +++++  + ++ +++    +++k+ i +   +++ L +v  +++ ++q+ e++ +++e+
  CCE27082.1 369 AQMKSKAANEHEDGLLEYLEDII-GTSKYKAPIEESAAEVETLNEVCAEKSGRVQHVEKEKNSLED 433
                 44555555555555556666666.699*****************************9998877765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.36
                 CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  33 vkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskel...eeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidq 127
                 +k+ +++++  l+e  + ++ +e+ +k++++++    k+ + +++ ++ + kel   e+e ++ +e+ +  + + ++Lq v+++ ++ i++  + i++
  CCE27082.1 470 TKEAVSQMQALLDEELRIHQGSEQFIKDLEKQYSMGSKEVEVHEKQTQALVKELvsfEQERVKCDEKRKFLVDKRKKLQRVIDNAQNAINDADETIEE 567
                 67889999999*999999***********999999988888888888877777644477788888887777899999999999999999987777765 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0024
                 CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  31 kdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqke 129
                 ++ ++d+e  ++e+++++++ k  e    +i+dsl+ k +  +d+ +v +k  +   e+i++ + +i   es+++ L++  ++  + + +Le ++++ e
  CCE27082.1 566 EENNRDIEARTREVAKLEEQVKVEEAELARIRDSLKGKTQAFSDKITVKQKAIEPWMEKINQKQSQIAVAESELNILKEKANAGAVAMGELEGKVASIE 664
                 5667889999999**************************9999885555555555444**********************************9998755 PP

  == domain 4  score: 16.4 bits;  conditional E-value: 4.7e-06
                  CCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha   26 llkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLe 122 
                  l +y+++ + ++++l+ ++ e++ + ++++  +++ +  l +++k  k+ ++  + s+++   +i+ l++ i++   +i++L++   s e +i+ L+
  CCE27082.1  922 LHDYQRECESTMKDLKTKIPELETKMQKIRLDIESCMRNLSDTKKRIKEVSQEHQPSASDST-RIAALEKGISKLNAEIEQLRSETASVEAEIKALQ 1017
                  889*********************************************99999999999988.9********************************* PP

                  HHHH CS
   Fib_alpha  123 qdid 126 
                   +i+
  CCE27082.1 1018 DKIM 1021
                  9997 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 1.2
                  HHHHHHHHH...HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha   67 ekqkskkdn...dnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidq 127 
                   + ++ ++       ++k + +l ++i++ ++      + ++ L +  +++ ++ q+L++++++
  CCE27082.1 1044 TNTEEMSNAevrRVKTEKKKIKLAQDITKANKDHELAAQDLQGLEGDASNQGERAQELKTQVKE 1107
                  3333333222224556666666777777777777777777777777777777777777777764 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 2.1
                  CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH...HHHHHHHHHHHHHHHHH CS
   Fib_alpha   42 neleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqe...snirvLqnvlesneqki 118 
                  ++l+ ++   ++  e  +e+k++++e+++    + + ++ +++el+++ ++l+++  a++   +++++ q++l++ne+++
  CCE27082.1 1082 QDLQGLEGDASNQGERAQELKTQVKEAETLLGSKREQLRAFKQELDDKTAELNKSRAAEIetrNKLEENQKILQENEKRL 1161
                  55666666666667777777777777777777777888888888888888887766555522345666677777777665 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 1.9
                  HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha   78 vikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidq 127 
                   +++++ ++    +++++++ ++  +   Lq+ +              +q
  CCE27082.1 1279 RTQNVNVDIG-VLAEYRRRVEEHAARSSDLQSAI--------------SQ 1313
                  3333333333.33444444444444444444444..............33 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   5.9       0.2   3.2e+02      48     113 ..     399     453 ..     364     464 .. 0.60
   2 ?    0.8  18.7       0.4   6.6e+02      10     128 ..     473     595 ..     469     612 .. 0.89
   3 ?   -1.7  11.5       2.4   3.8e+03      49     107 ..     551     609 ..     540     646 .. 0.42
   4 !   16.7  12.0   5.1e-06    0.0082      17     125 ..     624     729 ..     611     734 .. 0.84
   5 !    8.7  18.8    0.0015       2.4      15     126 ..     902    1056 ..     894    1062 .. 0.81
   6 ?   -1.5   0.2         2   3.3e+03      72     115 ..    1275    1310 ..    1247    1330 .. 0.52

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.2
      APG6_N  48 eleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlell 113
                  +           +e ++ +e L+e+ +e++   + +++ ++ le+++++  +f++e nel l+++
  CCE27082.1 399 PI-----------EESAAEVETLNEVCAEKSGRVQHVEKEKNSLEDKKDKALAFVQEENELTLKQS 453
                 33...........44455556666666666666666666666666666666666666666666665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.4
      APG6_N  10 LleeldkqleqaekerdaYeeflkklkkekkeeek....qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwre 104
                  +++++  l++  + ++  e+f k l+k+ +  +k    +++++++l +el   e+e+ +  e+ k l ++r++l++ + ++++  ++ +e  e+  r+
  CCE27082.1 473 AVSQMQALLDEELRIHQGSEQFIKDLEKQYSMGSKevevHEKQTQALVKELVSFEQERVKCDEKRKFLVDKRKKLQRVIDNAQNAINDADETIEENNRD 571
                 57899999999999999999999999999544444889999999******************************************************* PP

      APG6_N 105 ynelqlelleleeeldsleaqyeh 128
                   +  +e+++lee+ +  ea+++ 
  CCE27082.1 572 IEARTREVAKLEEQVKVEEAELAR 595
                 ************999887777765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.4
      APG6_N  49 leeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyne 107
                 ++++++ + + +++ ee  + +++  +e ++le++++  e+el+++ +  + + + +++
  CCE27082.1 551 IDNAQNAINDADETIEENNRDIEARTREVAKLEEQVKVEEAELARIRDSLKGKTQAFSD 609
                 33333334444444444444444444444444444444444444433333333333333 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 5.1e-06
      APG6_N  17 qleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlellel 115
                 +++q ++++   e+ l+ lk++++        + ele +++ +eke +++ +eLk+ e er +le+e ++ ++el+ l e+e +   + ++++ +  e 
  CCE27082.1 624 KINQKQSQIAVAESELNILKEKANAG---AVAMGELEGKVASIEKEGRAKTQELKACEVERTKLEEEANKMASELAILAEQEPKMRAKVSNYRQKADEA 719
                 55555555555555566666664443...4577889999************************************************************ PP

      APG6_N 116 eeeldsleaq 125
                    l+s +a+
  CCE27082.1 720 RSNLASTQAR 729
                 ****999987 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.0015
      APG6_N   15 dkqleqaekerdaYeeflkklkkekkeeek................................qdeeleeleee..........leklekeeeellee 69  
                  ++++ ++e+erd+ e  l++l+++++e e+                                +++ ++e  +e          +++lek  ++l +e
  CCE27082.1  902 TEHVTKLEQERDKWEGTLQELHDYQRECEStmkdlktkipeletkmqkirldiescmrnlsdTKKRIKEVSQEhqpsasdstrIAALEKGISKLNAE 998 
                  56777888999999999999998877776688888888888888888888888888887777444444444446666666778************** PP

      APG6_N   70 Lkelekereeleaelaaleeelealeeeeerfwreyne.lqlelleleeeldsleaqy 126 
                  +++l +e +++eae++al+ +  ++  e+ r  r   + l+ e +   ee+   e++ 
  CCE27082.1  999 IEQLRSETASVEAEIKALQDKIMEVGGEKLRSQRAKVDgLKAEINTNTEEMSNAEVRR 1056
                  **************************99999999998889999999999988888775 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 2
      APG6_N   72 elekereeleaelaaleeelealeeeeerfwreynelqlellel 115 
                  +le+  ++++ ++  l+e          r ++e+ + + +l++ 
  CCE27082.1 1275 ALEERTQNVNVDIGVLAEYR--------RRVEEHAARSSDLQSA 1310
                  33333333333333333332........3333333333333333 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   5.9       3.9   6.4e+03      32      75 ..     490     533 ..     468     548 .. 0.72
   2 !    7.1  19.4    0.0033       5.5      13     133 ..     513     631 ..     503     638 .. 0.81
   3 !    9.0  15.8   0.00089       1.5       5     125 ..     547     668 ..     543     672 .. 0.91
   4 ?    2.0   7.0      0.13   2.2e+02      20      72 ..     671     723 ..     664     730 .. 0.89
   5 !    7.4   0.4    0.0027       4.5     103     139 ..     891     927 ..     886     930 .. 0.82
   6 !   16.2   7.0   5.5e-06    0.0089       3      87 ..     906     990 ..     904     994 .. 0.94
   7 ?    1.0  11.1      0.26   4.2e+02      17      94 ..     993    1075 ..     987    1085 .. 0.79
   8 ?    3.0  14.0     0.064     1e+02       3      77 ..    1085    1159 ..    1083    1177 .. 0.92
   9 ?   -0.1   0.2      0.56   9.2e+02      35      85 ..    1271    1324 ..    1265    1326 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.9
  Tropomyosin_1  32 ekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnn 75 
                      eq ik+L+k+ ++  +eve  e++ +   +++ + e+++ + 
     CCE27082.1 490 GSEQFIKDLEKQYSMGSKEVEVHEKQTQALVKELVSFEQERVKC 533
                    46888999999999999999999999888777776666666554 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0033
  Tropomyosin_1  13 qekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkettekLr.etd 107
                     ++ ++l +++ + eqe+++ +++ k L  k ++l+  ++++++++++a e+ ee++    + ea tr +  LEe++   +++L+   + L+ +t+
     CCE27082.1 513 EKQTQALVKELVSFEQERVKCDEKRKFLVDKRKKLQRVIDNAQNAINDADETIEENN---RDIEARTREVAKLEEQVKVEEAELARIRDSLKgKTQ 605
                    34445556667778************************************9999876...5799***************************94566 PP

  Tropomyosin_1 108 vkaeelERkvkaLeqerdewekkyee 133
                    + ++++  k ka+e   ++ ++k  +
     CCE27082.1 606 AFSDKITVKQKAIEPWMEKINQKQSQ 631
                    77777777777777666666655444 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00089
  Tropomyosin_1   5 LkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesek.kktnnealtrkiqlLEeeleesdkkLket 99 
                    L+   ++aq+  +++ e + e + + +++  e+++L++++++ e+e+ ++ ++lk  +++ +++ + k++  e    ki++   ++  ++++L+  
     CCE27082.1 547 LQRVIDNAQNAINDADETIEENNRDIEARTREVAKLEEQVKVEEAELARIRDSLKGKTQAFSDKITvKQKAIEPWMEKINQKQSQIAVAESELNIL 642
                    555679**************************************************99999888661555679999******************** PP

  Tropomyosin_1 100 tekLretdvkaeelERkvkaLeqerd 125
                     ek +   v+ +elE kv+++e+e  
     CCE27082.1 643 KEKANAGAVAMGELEGKVASIEKEGR 668
                    **********************9975 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.13
  Tropomyosin_1  20 eekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkk 72 
                     +++K+ e e+++ e+e +++   +  l e+  k+ +k++++++ka+e+ ++ 
     CCE27082.1 671 TQELKACEVERTKLEEEANKMASELAILAEQEPKMRAKVSNYRQKADEARSNL 723
                    5789******************************************9987754 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.0027
  Tropomyosin_1 103 LretdvkaeelERkvkaLeqerdewekkyeeleekyk 139
                    L  + + a+ +  +v++Leqerd+we  ++el++ ++
     CCE27082.1 891 LMSSKIVADISTEHVTKLEQERDKWEGTLQELHDYQR 927
                    55667888999999*************9999987655 PP

  == domain 6  score: 16.2 bits;  conditional E-value: 5.5e-06
  Tropomyosin_1   3 nsLkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEe 87 
                    ++L  e +++    +el++  +e e++ ++   +i +L++k+q++  ++e    +l+++k+  +e +++++ + + + +i  LE 
     CCE27082.1 906 TKLEQERDKWEGTLQELHDYQRECESTMKDLKTKIPELETKMQKIRLDIESCMRNLSDTKKRIKEVSQEHQPSASDSTRIAALEK 990
                    67899************************************************************99999999998999999986 PP

  == domain 7  score: 1.0 bits;  conditional E-value: 0.26
  Tropomyosin_1   17 eeleekvKeleqenlekeqeiksLtkknqqle.eevekleeklkeakekaeesekkktnne....altrkiqlLEeeleesdk 94  
                     ++l++++ +l +e+ + e eik L+ k+ ++  e++    +k+   k++ + ++++ +n+e    + ++k   L +++ +++k
     CCE27082.1  993 SKLNAEIEQLRSETASVEAEIKALQDKIMEVGgEKLRSQRAKVDGLKAEINTNTEEMSNAEvrrvKTEKKKIKLAQDITKANK 1075
                     57889999999999999999999999987775267888889999999999999999999998888666666666666666655 PP

  == domain 8  score: 3.0 bits;  conditional E-value: 0.064
  Tropomyosin_1    3 nsLkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnea 77  
                     + L  +a +  e+a+el+ +vKe+e    +k ++++  ++ ++   +e++k  ++  e+++k+ee++k  ++ne+
     CCE27082.1 1085 QGLEGDASNQGERAQELKTQVKEAETLLGSKREQLRAFKQELDDKTAELNKSRAAEIETRNKLEENQKILQENEK 1159
                     66778999999*********************************************************9999994 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 0.56
  Tropomyosin_1   35 qeiksLtkknqqleeeve...kleeklkeakekaeesekkktnnealtrkiqlL 85  
                      ei+ L+++ q+++ ++    ++  +++e+ + +++ +++ ++ +a +++ + L
     CCE27082.1 1271 GEIAALEERTQNVNVDIGvlaEYRRRVEEHAARSSDLQSAISQRDAAKKRCDDL 1324
                     589999999999999975111566789999999999999999999999998765 PP

>> Shugoshin_N  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.085   1.4e+02      19      33 ..     936     950 ..     934     953 .. 0.89
   2 !   11.5   0.2   0.00013      0.21      20      43 ..     982    1005 ..     982    1006 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.085
  Shugoshin_N  19 lslkirelekevseL 33 
                  l++ki+ele+++ ++
   CCE27082.1 936 LKTKIPELETKMQKI 950
                  89*********9986 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00013
  Shugoshin_N   20 slkirelekevseLlsENlnLRel 43  
                   s++i  lek +s+L +E+ +LR++
   CCE27082.1  982 STRIAALEKGISKLNAEIEQLRSE 1005
                   79********************97 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.4       1.2   1.9e+03      23      53 ..     404     434 ..     397     441 .. 0.81
   2 ?   -1.7   1.7       1.5   2.5e+03      20      52 ..     524     556 ..     501     568 .. 0.64
   3 ?    2.6   4.0     0.071   1.2e+02      18      51 ..     564     597 ..     550     601 .. 0.79
   4 ?   -1.1   0.5         1   1.7e+03      19      41 ..     625     647 ..     618     671 .. 0.64
   5 ?    2.0   1.9      0.11   1.8e+02      21      57 ..     662     698 ..     649     702 .. 0.82
   6 ?   -0.4   1.8      0.62     1e+03      20      54 ..     682     716 ..     678     729 .. 0.83
   7 ?    1.8   0.3      0.13   2.1e+02      20      51 ..     906     937 ..     900     944 .. 0.85
   8 ?    0.8   0.1      0.26   4.2e+02      18      50 ..     932     964 ..     930     975 .. 0.72
   9 ?   15.0   0.5   9.7e-06     0.016      18      54 ..     984    1019 ..     979    1023 .. 0.89
  10 ?   -0.4   0.6      0.63     1e+03      35      50 ..    1030    1045 ..    1025    1082 .. 0.57
  11 ?   -2.5   5.3       2.8   4.6e+03      21      53 ..    1121    1157 ..    1111    1162 .. 0.54
  12 ?   -1.7   0.3       1.5   2.4e+03      17      50 ..    1291    1324 ..    1268    1328 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHHHHHHHHHHCC-XXX CS
       DivIC  23 kqeiaalqaelaklkaeneeLeaevkdLksd 53 
                  +e+++l++  a+++ + +  e+e + L++ 
  CCE27082.1 404 AAEVETLNEVCAEKSGRVQHVEKEKNSLEDK 434
                 6899999999999999999999999999654 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLeaevkdLks 52 
                  + +qe+++  ++ + l +++++L++ +++ ++
  CCE27082.1 524 VSFEQERVKCDEKRKFLVDKRKKLQRVIDNAQN 556
                 455566666666666666666666666666654 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.071
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                 ++ + +++i+a ++e+akl ++ +  eae+++ +
  CCE27082.1 564 TIEENNRDIEARTREVAKLEEQVKVEEAELARIR 597
                 5667788888888888888888888888888775 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  19 ykqlkqeiaalqaelaklkaene 41 
                 + q++++ia  + el+ lk++ +
  CCE27082.1 625 INQKQSQIAVAESELNILKEKAN 647
                 55666666666666666666554 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXX CS
       DivIC  21 qlkqeiaalqaelaklkaeneeLeaevkdLksdedyi 57 
                 ++++e  a+++el++   e+ +Le+e +++ s+ + +
  CCE27082.1 662 SIEKEGRAKTQELKACEVERTKLEEEANKMASELAIL 698
                 67888899999*****************996554444 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXX CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLeaevkdLksde 54 
                  +l++e ++   ela l +++ ++ a+v+++++  
  CCE27082.1 682 TKLEEEANKMASELAILAEQEPKMRAKVSNYRQKA 716
                 67899999999999999999999999999998743 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                  +l+qe+++ + +l++l++ ++e e+  kdLk
  CCE27082.1 906 TKLEQERDKWEGTLQELHDYQRECESTMKDLK 937
                 57899999999999999999999999999995 PP

  == domain 8  score: 0.8 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdL 50 
                 ++k+lk +i +l+ +++k++ ++e+  ++++d 
  CCE27082.1 932 TMKDLKTKIPELETKMQKIRLDIESCMRNLSDT 964
                 788999999999999999988877665544444 PP

  == domain 9  score: 15.0 bits;  conditional E-value: 9.7e-06
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXX CS
       DivIC   18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksde 54  
                  ++ +l++ i +l+ae+++l+ e ++ eae+k L +d+
  CCE27082.1  984 RIAALEKGISKLNAEIEQLRSETASVEAEIKAL-QDK 1019
                  56789999*************************.675 PP

  == domain 10  score: -0.4 bits;  conditional E-value: 0.63
                  HHHHHHHHHHHHHCC- CS
       DivIC   35 klkaeneeLeaevkdL 50  
                  +++a+ + L+ae++  
  CCE27082.1 1030 SQRAKVDGLKAEINTN 1045
                  3444444444444332 PP

  == domain 11  score: -2.5 bits;  conditional E-value: 2.8
                  HHHHHHHHHHHHHHHHH....HHHHHHHHHHCC-XXX CS
       DivIC   21 qlkqeiaalqaelaklk....aeneeLeaevkdLksd 53  
                  + kqe+++++ael+k +    +++++Le++ k L+ +
  CCE27082.1 1121 AFKQELDDKTAELNKSRaaeiETRNKLEENQKILQEN 1157
                  4555555555555554411115666677777666544 PP

  == domain 12  score: -1.7 bits;  conditional E-value: 1.5
                  XHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC   17 laykqlkqeiaalqaelaklkaeneeLeaevkdL 50  
                    y++  +e aa   +l++   ++++ +++ +dL
  CCE27082.1 1291 AEYRRRVEEHAARSSDLQSAISQRDAAKKRCDDL 1324
                  3445555555555566666666666666666555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00077       1.3      15      45 ..     244     279 ..     238     359 .. 0.76
   2 ?    5.0   0.0      0.02        32     101     134 ..    1380    1417 ..    1261    1420 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00077
                 EEEESTTSSHHHHHHHHT.....TSS--SEEEEEET CS
                 xxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlklla.....gllkpteGeilld 45 
                  +vG+nG+GKS ++  l+     + +k  +G+i   
  CCE27082.1 244 SVVGPNGSGKSNVIDSLLfvfgfRASKMRQGKISAL 279
                 68**********999886222223444466666444 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.02
                  GESTTSGGS-HHHHHHHHHHHHHH....HTSSEEEEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
    ABC_tran  101 vvksspssLSgGqkqrvalarall....kkpkllllDE 134 
                  +  ++ s+LSgG+k   +la +++    k  +l+++DE
  CCE27082.1 1380 KSWKNISNLSGGEKTLSSLALVFAlhhyKPTPLYVMDE 1417
                  333667*********99999887611113345666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2245  (0.125216); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                       141  (0.00786435); expected 17.9 (0.001)
Passed Fwd filter:                        82  (0.0045736); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 2.58u 0.37s 00:00:02.95 Elapsed: 00:00:00.66
# Mc/sec: 6904.95
//
Query:       CCE27083.1  [L=117]
Description: uncharacterized protein CPUR_00555 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-52  175.8   9.4    3.1e-52  175.6   9.4    1.0  1  Ribosomal_S26e  Ribosomal protein S26e
  ------ inclusion threshold ------
      0.019   14.9   0.4      0.052   13.5   0.0    1.9  2  zf_CopZ         Zinc binding domain
       0.11   12.3   2.4       0.13   12.1   1.7    1.4  1  DUF4668         Domain of unknown function (DUF4668)


Domain annotation for each model (and alignments):
>> Ribosomal_S26e  Ribosomal protein S26e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.6   9.4   5.2e-56   3.1e-52       1     106 [.       1     106 [.       1     108 [. 0.98

  Alignments for each domain:
  == domain 1  score: 175.6 bits;  conditional E-value: 5.2e-56
                     X--S-SSTT----S-S---EEE-TTT--EEES----EEEEEEESS-SSSHHHHTTSBSSSS----EEEEEEE--HHHHHHTTSS----TTTTS-- CS
  Ribosomal_S26e   1 mtkKRrnngrnkkgrghvkivrCsncarlvpkdKaikrfvvrniveaaavrdlseasvyeeyalPklYiklaycvscaihskvvrvRsredrknr 95 
                     m kKR+nngrnkkgrgh+k++rCsnc+r++pkdKaikrf++rn+ve+aa+rd+s+asv++ey++Pk+Y+kl+ycvscaih k+vrvRsr +r+nr
      CCE27083.1   1 MVKKRKNNGRNKKGRGHTKPIRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYTVPKMYLKLQYCVSCAIHGKIVRVRSRVGRRNR 95 
                     89********************************************************************************************* PP

                     S-S---XXX.. CS
  Ribosomal_S26e  96 eppkrvrkkke 106
                     +pp+rvr +k+
      CCE27083.1  96 APPPRVRYNKD 106
                     ******99986 PP

>> zf_CopZ  Zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.7e-06     0.052       2      32 ..      24      54 ..      23      60 .. 0.87
   2 ?   -1.6   0.1      0.46   2.7e+03       4      15 ..      74      85 ..      72      87 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.7e-06
                -B-TTT--B-EEE-HHHHHHHB-GGGGGG-- CS
     zf_CopZ  2 kkCPvCgkkGkkVkliTvkhllkpellekvk 32
                ++C +C  k k +k++T++++++  +   ++
  CCE27083.1 24 SNCSRCTPKDKAIKRFTIRNMVESAAIRDIS 54
                58*********************99887654 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.46
                -TTT--B-EEE- CS
     zf_CopZ  4 CPvCgkkGkkVk 15
                C +C   Gk V+
  CCE27083.1 74 CVSCAIHGKIVR 85
                999999999886 PP

>> DUF4668  Domain of unknown function (DUF4668)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.7   2.2e-05      0.13      65      96 ..      15      44 ..       5      51 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.2e-05
     DUF4668 65 kfkrkpkrCskikcsrcnarkkhPkwFklkyw 96
                + ++kp rCs  +csrc+ + k  k+F+++++
  CCE27083.1 15 RGHTKPIRCS--NCSRCTPKDKAIKRFTIRNM 44
                457899***9..6****************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 899.68
//
Query:       CCE27084.1  [L=153]
Description: probable ubiquitin/ribosomal protein S27a fusion protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-34  115.9   1.1    7.8e-34  115.3   0.6    1.6  2  ubiquitin      Ubiquitin family
    4.4e-26   90.8   1.3    4.4e-26   90.8   1.3    2.0  2  Ribosomal_S27  Ribosomal protein S27a
    2.2e-16   59.4   0.7    4.8e-16   58.3   0.7    1.6  1  Rad60-SLD      Ubiquitin-2 like Rad60 SUMO-like
    2.4e-05   24.7   0.5    0.00013   22.4   0.1    2.2  2  Ubiquitin_2    Ubiquitin-like domain
     0.0012   18.9   0.7     0.0026   17.8   0.7    1.6  1  Rad60-SLD_2    Ubiquitin-2 like Rad60 SUMO-like
     0.0045   17.3   0.9     0.0078   16.5   0.0    1.7  2  Ubiquitin_5    Ubiquitin-like domain
     0.0055   16.6   0.0     0.0081   16.1   0.0    1.3  1  TBK1_ULD       TANK binding kinase 1 ubiquitin-like domain
  ------ inclusion threshold ------
      0.012   16.2   0.7      0.017   15.7   0.7    1.3  1  DUF2407        DUF2407 ubiquitin-like domain
      0.017   15.1   1.0        5.8    7.0   0.2    2.5  2  Ubiquitin_4    Ubiquitin-like domain


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.6   3.9e-37   7.8e-34       1      72 []       3      74 ..       3      74 .. 0.99
   2 ?   -3.2   0.0       3.8   7.5e+03      54      65 ..     103     114 ..     102     119 .. 0.65

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 3.9e-37
                EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin  1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72
                i+vktl+gk+itleve+sdt++++K ki++kegip++qqrLi++Gk+Led rtl++y+iq++stlhlvlrlr
  CCE27084.1  3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
                9********************************************************************986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.8
                 HGGHTTSTTEEE CS
   ubiquitin  54 leeygiqdgstl 65 
                 l++y+++++ ++
  CCE27084.1 103 LKYYKVDQDGKI 114
                 567777776655 PP

>> Ribosomal_S27  Ribosomal protein S27a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3       1.8   3.6e+03      11      19 ..      89      97 ..      83      99 .. 0.77
   2 !   90.8   1.3   2.2e-29   4.4e-26       1      45 []     102     147 ..     102     147 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.8
                   SSEEESS-B CS
  Ribosomal_S27 11 gkverlrke 19
                   +k++++rk+
     CCE27084.1 89 KKIKHKRKK 97
                   799999986 PP

  == domain 2  score: 90.8 bits;  conditional E-value: 2.2e-29
                    SSSSCCESSSSSEEESS-B-SS-.S-TTSBEEECTTEEEESSTTTE CS
  Ribosomal_S27   1 vlkyYkvddsgkverlrkeCpre.CGaGvfMAehkdRkyCGkCglT 45 
                    vlkyYkvd++gk+erlr+eCp + CGaGvfMA++ dR+yCG+C+lT
     CCE27084.1 102 VLKYYKVDQDGKIERLRRECPADtCGAGVFMASMPDRQYCGRCHLT 147
                    8********************************************9 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.7   2.4e-19   4.8e-16       1      72 []       1      71 [.       1      71 [. 0.98

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 2.4e-19
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD  1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72
                ++i++k+ +gk+++++V+++ t+ +++++ ++k+gip+ +++rLiF G++L++  t+ d+ i++++t+++v+
  CCE27084.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
                89************************************.******************************986 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   6.3e-08   0.00013      16      80 ..      13      69 ..       2      70 .. 0.86
   2 ?   -1.8   0.0       2.2   4.5e+03      66      73 ..     102     109 ..      83     119 .. 0.59

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.3e-08
                 EEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2 16 serrfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80
                  +  +++s+ti+++K+k++   G++p+++rL +          k  +d ++L++Y+++  +++h 
   CCE27084.1 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHL 69
                 55668899************************99........5667899*********9999995 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.2
                  BCCCCT-- CS
  Ubiquitin_2  66 lLgsYgvk 73 
                   L++Y+v+
   CCE27084.1 102 VLKYYKVD 109
                  44444443 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.7   1.3e-06    0.0026      16     101 ..      13      89 ..       2     101 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.3e-06
                  EEEEEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE---SS----.XX....XX CS
  Rad60-SLD_2  16 gpvkfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvvrenlsekksekk....ak 101
                    ++ ++++t++++k k+     +dke  p  +++ +li aGk Le+ +tl++++++        +++H+v+r     kk++kk     k
   CCE27084.1  13 ITLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVLRLRGGGKKRKKKvyttPK 89 
                  556667777777777777.....4555533..34559*****************54433......579***9998888888777654422 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.9e-06    0.0078      34      93 ..      13      73 ..       5      78 .. 0.83
   2 ?   -0.8   0.2         1   2.1e+03      42      42 ..      91      91 ..      66     112 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.9e-06
  Ubiquitin_5 34 klletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv.mvLkl 93
                  +le++ + t +++ ski ++ g+  ++ +li  gk+le ++tL + +++++s + +vL+l
   CCE27084.1 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLhLVLRL 73
                 5566666677889999999*****99***********************999875467765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1
  Ubiquitin_5 42 v 42
                 +
   CCE27084.1 91 I 91
                 2 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.1e-06    0.0081      19      53 ..      17      51 ..       4      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.1e-06
    TBK1_ULD 19 ihpyntvaifqeevakqTkiaaekQellfeghrll 53
                +++ +t++++  +++++  i++++Q l+f g++l 
  CCE27084.1 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
                6789****************************973 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.7   8.3e-06     0.017      14      72 ..      13      87 ..       6     113 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.3e-06
     DUF2407 14 leLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslklpees....................v 72
                ++L+++  ++ t+ ++k  i ++    +   + rLI+aG+ Led  +l++   ++e++                    +
  CCE27084.1 13 ITLEVE--SSDTIDNVKSKIQDKE--GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTlhlvlrlrgggkkrkkkvytT 87
                566666..6789999999999987..67777789**************9865555444577777777666554333222 PP

>> Ubiquitin_4  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0029       5.8       1      32 [.       1      32 [.       1      36 [. 0.94
   2 ?    6.4   0.0    0.0045         9      58      86 ..      43      70 ..      39      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0029
  Ubiquitin_4  1 lkvtvkkldgeslevvvkqnatvkdLkkaier 32
                 +++ vk l g+++ ++v+++ t+ ++k  i+ 
   CCE27084.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQD 32
                 7899*************************997 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0045
  Ubiquitin_4 58 LsfegekLkddkaklkeygirnkselsFv 86
                 L+f g++L+ d  +l++y i+++s+l+ v
   CCE27084.1 43 LIFAGKQLE-DGRTLSDYNIQKESTLHLV 70
                 889999986.6789************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1064  (0.0593452); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1067.28
//
Query:       CCE27085.1  [L=510]
Description: probable SIK1-involved in pre-rRNA processing [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.8e-83  277.1   0.0    1.8e-82  276.2   0.0    1.4  1  Nop           snoRNA binding domain, fibrillarin
    9.2e-18   64.4   0.1    9.2e-18   64.4   0.1    2.1  2  NOP5NT        NOP5NT (NUC127) domain
  ------ inclusion threshold ------
       0.38   10.8  26.5       0.64   10.1  26.5    1.3  1  RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
        1.8    8.4  12.4        2.8    7.7  12.4    1.3  1  RR_TM4-6      Ryanodine Receptor TM 4-6
        4.1    6.1   4.2        5.6    5.6   4.2    1.3  1  Presenilin    Presenilin


Domain annotation for each model (and alignments):
>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.2   0.0   5.1e-86   1.8e-82       6     229 ..     187     415 ..     182     416 .. 0.94

  Alignments for each domain:
  == domain 1  score: 276.2 bits;  conditional E-value: 5.1e-86
                 HHHHHHHHHHHHHHHTTTSTCHHHHS-SHHHHHHHHHHCCCCHCCT.HH..TT........HHHHHHHHHHHHCHHHH-SSS-S-HHHHHHHHHHHHHH CS
         Nop   6 dkeintlhkrvrewYswhFpELeslvkdnleYakvvkligneredlekk..ee.......deelakevimaakvtastsmgaelseedlknikelcdrv 95 
                 dk +n++++rvrewY+whFpEL ++v+dnl+Yak+v +ig ++++l+++  ++       d e+a++vi+aakv    smg ++++ dl+ i  +++ v
  CCE27085.1 187 DKGVNQFFMRVREWYGWHFPELVKIVSDNLTYAKMVLAIG-DKKTLSNErlHDlaailgeDGEKAQAVIDAAKV----SMGLDITPADLEIIAGFAQAV 280
                 899*************************************.7777755534338888876666999********....********************* PP

                 HHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHSSHHHHHCS-HHHHTTTT-HHHHCCCHH.T---SSSCHHHCSHHHHHTS-CCCHHHHH CS
         Nop  96 leleelrkelleYlesrmsaiAPNlsaLvGeevaarLishaGgLtnLakmPastiqilGaekalfralk.kkntpkyGliyhselvqkatppklkkkia 193
                 ++ +e+rk+ + Yle++m ++APNl+aL+G+ vaarLishaG+Lt L+k+Past+qilGaekalfralk k+ntpkyGliyhs+++++a  +++k++i+
  CCE27085.1 281 VQQAENRKTTSAYLEKKMGHVAPNLQALIGTPVAARLISHAGSLTTLSKYPASTLQILGAEKALFRALKaKSNTPKYGLIYHSSFIGRA-ATRNKGRIS 378
                 *********************************************************************888***************88.9******** PP

                 HHHHHHHHHHHHHHHTT---.-SHHHHHHHHHHHHHH CS
         Nop 194 RllaaKvalaaRiDafsekd.gslGkklreeiekklk 229
                 R+la+K+++a+RiD+fse++ +++G++lr+++e++l+
  CCE27085.1 379 RYLANKCSMASRIDNFSEEPsTRFGDALRQQVEDRLE 415
                 **************9999999**************97 PP

>> NOP5NT  NOP5NT (NUC127) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.1   2.6e-21   9.2e-18       1      65 []       6      72 ..       6      72 .. 0.93
   2 ?   -6.7   3.7         5   1.8e+04      23      28 ..     472     474 ..     460     488 .. 0.45

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 2.6e-21
      NOP5NT  1 fiLfEtaaGYaLfkv.kdk....kllkkddlvkdsvsdlekfsklvkLkaFqkFesaaeALenanaiseG 65
                + L+E+++GYaLf+v +++     +l++    + +v dl+kf+k+vkL +F++F+  +eALen+n +seG
  CCE27085.1  6 YALYESPVGYALFQVvHQSdavgLKLQE---TQAAVGDLAKFGKMVKLINFSPFRGHVEALENINLVSEG 72
                78*************5555999988888...9999**********************************9 PP

  == domain 2  score: -6.7 bits;  conditional E-value: 5
      NOP5NT  23 kddlvk 28 
                 k    k
  CCE27085.1 472 K---EK 474
                 1...11 PP

>> RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  26.5   0.00018      0.64     138     204 ..     445     503 ..     403     504 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00018
                   ...XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX..XXXXXX...XXXXXXXX CS
  RNA_polI_A34 138 gekekkkkpkakkkekkkkkkkaaeedeeeeapkkkkkkkkkkkekkeeekkeekeeeskkskkkKK 204
                   +++e+    +a++++++kk+kk+++    e+++kk+kk+kk+kk++++e+ +++ ++ +kk+kkk+K
    CCE27085.1 445 SDDEM---VDAPAPSSAKKEKKDKK----EKKEKKEKKEKKDKKRARDED-SAPVDDAEKKKKKKRK 503
                   22222...33333444444444433....346666666666666666543.3444434444444444 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  12.4   0.00077       2.8      70     150 ..     437     504 ..     386     510 .] 0.40

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00077
                 XXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXX CS
    RR_TM4-6  70 LgDlseteaeespt....pelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkaks 150
                 LgD  ++ + +++     p+                +++e++ ++e+k+++e++ek++k+++  ++e+++++++ ekkkkkk+ks
  CCE27085.1 437 LGDCADKGSDDEMVdapaPSS---------------AKKEKKDKKEKKEKKEKKEKKDKKRA--RDEDSAPVDDAEKKKKKKRKS 504
                 333333333332211111111...............12222222222222333333333322..333333333333333333333 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.2    0.0016       5.6     250     282 ..     459     491 ..     349     510 .] 0.55

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0016
  Presenilin 250 esskeeeseeesseksaqsseseeeseeessea 282
                 +++k++++e+++++++++++++++ ++e+s+++
  CCE27085.1 459 KKEKKDKKEKKEKKEKKEKKDKKRARDEDSAPV 491
                 011111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2219  (0.123766); expected 358.6 (0.02)
Passed bias filter:                      948  (0.0528752); expected 358.6 (0.02)
Passed Vit filter:                       196  (0.010932); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 3463.85
//
Query:       CCE27086.1  [L=393]
Description: probable endochitinase class V precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-90  304.2   3.7    1.7e-90  303.9   3.7    1.1  1  Glyco_hydro_18  Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.9   3.7   9.5e-95   1.7e-90       1     312 []       7     350 ..       7     350 .. 0.94

  Alignments for each domain:
  == domain 1  score: 303.9 bits;  conditional E-value: 9.5e-95
                     EEEEEEEGGGGGSS.G.C..SHTTTESEEEEEEEEEEETTTEEEESS.TTHH.................HHHHHHHHHHHHTSTT-EEEEEEEET CS
                     xxxxxxxxxxxxxx.x.x..xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   1 rvvgYysswesygn.n.y..lpsaklthiiyaFakidgengkvvvsd.wedl.................gnfeqlkklkkkknpgvkvllsiGGw 73 
                     r+v+Y+ +w+ y++      lp ++lth++yaFa++++++g+v ++d w+d+                 g+++ql+ lk k+n+++kvllsiGGw
      CCE27086.1   7 RTVAYFVNWAIYARkHrPqdLPVKNLTHVLYAFANVQSDSGNVHLTDtWADTdihwehdswndtgknlyGCLKQLNLLK-KHNRNLKVLLSIGGW 100
                     689*********7744535799*********************************************************.*************** PP

                     TTTTHHHHHHTSHHHHHHHHHHHHHHHHHCT-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHH..HHHHHTSTTCEEEEEEESSHHHHHHHCHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  74 tdssgfslaastdasrkkfadsvvsllrkygfDGiDidweypggnpedkenytallkelreald..kakategkkllLsaavpasasdlskgydl 166
                     t+s++f+  ast++ r++fa+s v+ll+++gfDGiDidweyp++ + +++ y++ll+++r++ld  +ak++++ +++L++a pa++ +++k  d+
      CCE27086.1 101 TYSANFRGPASTPQGRETFAKSSVELLKDLGFDGIDIDWEYPQD-ELEAQDYVQLLAAVRKELDdyAAKSANKHHFELTVACPAGPTNYKKL-DI 193
                     ******************************************87.777****************6555559*****************9888.** PP

                     HHHHHHTSEEEEETTTSSSTTSSBE--SS-SSB....T.CSSHHHHHHHHHHTT--GGGEEEEEESEEEEEEESSSSSS........TSTTTEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxx RF
  Glyco_hydro_18 167 pkiakylDyvnvmtYDfhgswdnvtghhaplyd....a.slnvdeavkeylkagvpakklvlGvpfygrawalvsgadn........tkeegvls 248
                     +++ +ylD+ n+m+YD+ gswd v gh+a+ly     +  ++++ av++y + gv a+k+vlG+p ygra+++++g ++        t+e+gv++
      CCE27086.1 194 KAMDQYLDFWNLMAYDYAGSWDRVSGHQANLYPrsdpStPFSTSVAVDHYTSHGVAANKIVLGMPLYGRAFENTKGLGQpfqgvgqgTWENGVFD 288
                     *********************************876516**********************************99955577778888******** PP

                     HHHHHHHHTEEEEEEEEETTTTEEEEEETT..EEEEE-SHHHHHHHHHHHHHTTESEEEEETGGGS CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 249 ykelkellkkakakrkydskakapyvydge..efvsyDdpksikakadyvkakglgGvmiWsldqD 312
                     yk+l+     ++a+++ d+ka+a y+y++   ++vsyD+p+++++ka y+k++glgG+m+W+ ++D
      CCE27086.1 289 YKKLPL----EGAEVYCDEKAQATYCYNAAqqKLVSYDTPSMARTKAGYIKERGLGGAMWWESSGD 350
                     **9998....59*****************99*******************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2861.62
//
Query:       CCE27087.1  [L=76]
Description: uncharacterized protein CPUR_00559 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      147  (0.00819901); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 583.39
//
Query:       CCE27088.1  [L=756]
Description: uncharacterized protein CPUR_00560 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0047   16.9  17.3      0.028   14.5   3.2    3.8  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
     0.0094   16.6   1.0       0.77   10.4   0.0    2.8  2  Ribosomal_S20p  Ribosomal protein S20
  ------ inclusion threshold ------
      0.013   15.1   2.5        2.9    7.5   0.0    3.5  3  TPD52           Tumour protein D52 family
      0.021   14.7   0.0      0.021   14.7   0.0    3.9  4  CK2S            Casein Kinase 2 substrate
      0.034   14.4   8.8        3.2    8.0   0.5    3.9  3  DUF5082         Domain of unknown function (DUF5082)
      0.066   12.8  27.1        0.3   10.6   6.3    4.2  4  Filament        Intermediate filament protein
       0.16   12.2   9.1       0.55   10.5   0.1    3.5  3  HMMR_C          Hyaluronan mediated motility receptor C-termi
       0.33   11.3  22.1       0.12   12.7   1.2    5.3  5  DUF641          Plant protein of unknown function (DUF641)
       0.34   11.4  28.5        0.6   10.6   0.7    4.3  4  APG6_N          Apg6 coiled-coil region
       0.58   10.2  11.3        0.7    9.9   0.9    4.0  4  DUF1664         Protein of unknown function (DUF1664)
        0.8    9.5  31.0        4.2    7.1  19.8    4.0  3  ERM             Ezrin/radixin/moesin family
          1    8.1  23.8        3.2    6.6   2.9    3.3  3  Spc7            Spc7 kinetochore protein
        1.9    9.1  30.2       0.22   12.2   4.0    4.9  5  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
        2.4    8.1   9.4        3.8    7.4   1.1    3.5  3  GIT_CC          GIT coiled-coil Rho guanine nucleotide exchan
        5.5    7.4  11.4        5.7    7.3   1.2    3.7  3  BLOC1_2         Biogenesis of lysosome-related organelles com
        6.8    6.2  21.6        5.8    6.4   0.4    3.3  2  Exonuc_VII_L    Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   1.8    0.0044       4.9      93     137 ..     108     151 ..     103     154 .. 0.88
   2 ?    2.3   0.1      0.14   1.6e+02      64      94 ..     325     358 ..     314     402 .. 0.60
   3 !   14.5   3.2   2.5e-05     0.028      62     120 ..     478     536 ..     461     553 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0044
  CENP-F_leu_zip  93 qervseLeslnsslenlleekEqekvqmkeeskaaveeLqtqlke 137
                       rv+ L+++n s++ ll+++ +++++    +++++e+L+++++ 
      CCE27088.1 108 DGRVERLQRRN-SMRTLLNKLDDDQRHKARVAQTQIEQLKSEIQR 151
                     57899998877.69***************************9985 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.14
  CENP-F_leu_zip  64 laeelreleldLvalr...sekeeLekelqkkqe 94 
                     l+eel+ l+ ++ +l+      ++L+  l+++  
      CCE27088.1 325 LEEELSSLQREVGKLTatlDSHKNLAARLKQQLA 358
                     3333333333333333222233333333333333 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 2.5e-05
  CENP-F_leu_zip  62 eelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqm 120
                     + l+++l    + +++lrs+  + ++ lq++q rv+eLe  ++ l+  +e  E + +++
      CCE27088.1 478 QSLRQQLGARVSAMDELRSDMTKAQRRLQDEQARVQELEVGQERLRGAVEGYERDLAEL 536
                     45666777777788889999999999***********************9999986665 PP

>> Ribosomal_S20p  Ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.085        95      21      58 ..     114     151 ..     103     156 .. 0.85
   2 !   10.4   0.0   0.00069      0.77      32      79 ..     311     359 ..     306     361 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.085
                     HHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH CS
  Ribosomal_S20p  21 rsyksavrtaiKkvraaieadkekaqealkkaiskidk 58 
                      ++++++rt++ k+    + ++  aq++++++ s+i++
      CCE27088.1 114 LQRRNSMRTLLNKLDDDQRHKARVAQTQIEQLKSEIQR 151
                     568999999999999999889999*******9999976 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00069
                     HHHHHHH.HC-HHHHHHHHHHHHHHHHHHHCTTSSTCCHHHHHHHHHHH CS
  Ribosomal_S20p  32 Kkvraai.eadkekaqealkkaiskidkaakkgvihkNtAaRkkSrlak 79 
                     K v+a   +++ + ++e+l+++++++ k+ +    hkN AaR k +la 
      CCE27088.1 311 KGVQASFpDTTTQLLEEELSSLQREVGKLTATLDSHKNLAARLKQQLAT 359
                     555555533377789*******************************986 PP

>> TPD52  Tumour protein D52 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.043        48      19      68 ..     132     182 ..     117     209 .. 0.76
   2 ?    7.5   0.0    0.0026       2.9      17      66 ..     310     359 ..     298     367 .. 0.81
   3 ?    1.4   0.1      0.19   2.1e+02      59      88 ..     479     510 ..     472     521 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.043
       TPD52  19 aseptlteeereeLkseLakleeeivtLrqvLaa.kekhlaelkrklGlta 68 
                   ++ +++++ e+Lkse+++ + ei  L+++ +     ++++l ++ G   
  CCE27088.1 132 RHKARVAQTQIEQLKSEIQRRDREIYELQNATVViDTERIWDLEQQIGHLR 182
                 44557899999*****************98654414456778888888655 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0026
       TPD52  17 vsaseptlteeereeLkseLakleeeivtLrqvLaakekhlaelkrklGl 66 
                 ++  +++  ++  + L++eL  l+ e+  L  +L +++  +a lk++l  
  CCE27088.1 310 HKGVQASFPDTTTQLLEEELSSLQREVGKLTATLDSHKNLAARLKQQLAT 359
                 4444557778888999*****************************99864 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.19
       TPD52  59 elkrklG..ltalneLrqnlskswhdvqtsna 88 
                  l+++lG  ++a++eLr +++k+ + +q+ +a
  CCE27088.1 479 SLRQQLGarVSAMDELRSDMTKAQRRLQDEQA 510
                 5888998445799*********9999998877 PP

>> CK2S  Casein Kinase 2 substrate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.7      0.39   4.3e+02      40      86 ..     114     163 ..     108     190 .. 0.73
   2 ?   14.7   0.0   1.8e-05     0.021      28      99 ..     288     363 ..     283     392 .. 0.86
   3 ?    3.4   1.7     0.056        62      30      83 ..     449     502 ..     446     521 .. 0.78
   4 ?   -0.6   0.2      0.97   1.1e+03      78     110 ..     532     564 ..     505     572 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.39
        CK2S  40 lqnvklygtp...lrdfpdlqerLrekqlealeevlakLrekleelqkvr 86 
                 lq+ ++ +t    l+d + ++ r+ + q+e+l +++++   ++ elq+++
  CCE27088.1 114 LQRRNSMRTLlnkLDDDQRHKARVAQTQIEQLKSEIQRRDREIYELQNAT 163
                 3444444444222666677888***********99999888888888765 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.8e-05
        CK2S  28 eslsnlaeqlqalqnvklygtp....lrdfpdlqerLrekqlealeevlakLrekleelqkvrdsleklvrdalql 99 
                 +s+s  a++l+ l+ ++ ++t      ++fpd  ++L+e+ l++l+++  kL  +l++ ++++ +l++++ ++  l
  CCE27088.1 288 TSASRRAQRLPLLTPTPPSTTThkgvQASFPDTTTQLLEEELSSLQREVGKLTATLDSHKNLAARLKQQLATVTPL 363
                 6899999999999999888777788899*****************************************9887654 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.056
        CK2S  30 lsnlaeqlqalqnvklygtp.lrdfpdlqerLrekqlealeevlakLrekleelq 83 
                 l  l+ ql+al   ++++ +  +++++l++ Lr+++ + + + +++Lr+++++ q
  CCE27088.1 449 LDLLLVQLRALATKSSDDDStIDEYHELEQSLRQQLGARV-SAMDELRSDMTKAQ 502
                 6668889999998888776669**********98776655.67888888887765 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.97
        CK2S  78 kleelqkvrdsleklvrdalqlyeekadklslk 110
                 +l+el+ ++++l++ + + l  +++  ++l+++
  CCE27088.1 532 DLAELEALVQRLDNEHGAQLAAKDQALAALEVR 564
                 455555555555555555555555555555554 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.5    0.0029       3.2       7      39 ..     137     169 ..     121     216 .. 0.73
   2 ?    2.2   0.1      0.19   2.1e+02      92     116 ..     324     348 ..     316     361 .. 0.50
   3 ?    6.9   0.5    0.0067       7.5      18      65 ..     480     527 ..     467     562 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0029
     DUF5082   7 klqaqiaelrseiaaleekIerLkeaktklsde 39 
                  +q qi++l+sei+  +  I +L+ a   +++e
  CCE27088.1 137 VAQTQIEQLKSEIQRRDREIYELQNATVVIDTE 169
                 47999******************9886555443 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.19
     DUF5082  92 aieeEIerLenqiseaqgvldtlqs 116
                  +eeE + L+ ++ +++  ld+ ++
  CCE27088.1 324 LLEEELSSLQREVGKLTATLDSHKN 348
                 3444444444444444444444444 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0067
     DUF5082  18 eiaaleekIerLkeaktklsdekeslkqkkkklekplnssesWkGkee 65 
                  +++l   ++   e ++ +++++ +l++++  +++ ++ +e ++G  e
  CCE27088.1 480 LRQQLGARVSAMDELRSDMTKAQRRLQDEQARVQELEVGQERLRGAVE 527
                 456788889999999***************************999754 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.9     0.022        25     205     252 ..     129     177 ..     109     190 .. 0.66
   2 ?    6.1   0.1    0.0062         7     211     249 ..     322     360 ..     310     402 .. 0.81
   3 ?   10.6   6.3   0.00027       0.3     185     273 ..     472     560 ..     456     566 .. 0.91
   4 ?    4.1   1.1     0.026        29     204     274 ..     569     639 ..     562     649 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.022
                 XXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
    Filament 205 eknsealrsakeeitelrrqiqsleieleslkkqkasle.aqlaeleer 252
                 + + +++r a+++i++l+ +iq++  e+ +l+++   +  +++ +le++
  CCE27088.1 129 DDQRHKARVAQTQIEQLKSEIQRRDREIYELQNATVVIDtERIWDLEQQ 177
                 4556677777778888888888888887777776655431344555554 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0062
                 XXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 211 lrsakeeitelrrqiqsleieleslkkqkasleaqlael 249
                  +  +ee++ l+r++ +l++ l+s+k+ +a l++qla +
  CCE27088.1 322 TQLLEEELSSLQREVGKLTATLDSHKNLAARLKQQLATV 360
                 566789*****************************9876 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00027
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 185 nreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelae 273
                 + +e+e+  +++l    +a+++  +++ +a++ +++ + ++q+le+  e l+++ + +e+ laele+ +++  +++ ++l++++++la 
  CCE27088.1 472 EYHELEQSLRQQLGARVSAMDELRSDMTKAQRRLQDEQARVQELEVGQERLRGAVEGYERDLAELEALVQRLDNEHGAQLAAKDQALAA 560
                 55899**********9********************************************************9**********999976 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.026
                 XXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 204 aeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaei 274
                 a++++++l    + + elr ++++ ++ l + + +   l+ +   le r +ae+ ++q++++++  el+++
  CCE27088.1 569 ARRHGQELALRDSRVLELRAELDRVHAALRAAHDTICRLRVRHGGLETRRDAERVQAQRAVDAIKMELQRV 639
                 67888889999999999999999999999999999999999999999999999999999999999999886 PP

>> HMMR_C  Hyaluronan mediated motility receptor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3      0.65   7.3e+02      10      39 ..     134     163 ..     124     191 .. 0.59
   2 ?   10.5   0.1   0.00049      0.55      93     131 ..     325     363 ..     322     369 .. 0.92
   3 ?    4.6   0.6     0.032        36       9      63 ..     496     550 ..     479     593 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.65
      HMMR_C  10 rkaekeetldelkeevkkW.rklyeellnkv 39 
                 +    ++++++lk+e+++  r++y el+n +
  CCE27088.1 134 KARVAQTQIEQLKSEIQRRdREIY-ELQNAT 163
                 334555556666666665414444.555543 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00049
      HMMR_C  93 lkeenselkqevsklrsqlakekqeekklkeqlkeakgv 131
                 l ee s+l++ev kl + l  +k+   +lk+ql ++ ++
  CCE27088.1 325 LEEELSSLQREVGKLTATLDSHKNLAARLKQQLATVTPL 363
                 67899****************************999765 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.032
      HMMR_C   9 qrkaekeetldelkeevkkWrklyeellnkvkPfqeqldafeaeknallnekGaa 63 
                 +  ++ ++ l++ ++ v++     e l   v  +++ l  +ea  + l ne+Ga+
  CCE27088.1 496 SDMTKAQRRLQDEQARVQELEVGQERLRGAVEGYERDLAELEALVQRLDNEHGAQ 550
                 334566777788888888999999*****************************96 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.2   0.00011      0.12      72     113 ..     120     161 ..     101     170 .. 0.79
   2 ?    1.2   0.1      0.38   4.3e+02      92     126 ..     320     354 ..     307     361 .. 0.76
   3 ?    4.9   0.7     0.028        32      75     123 ..     458     506 ..     445     511 .. 0.86
   4 ?    2.7   0.9      0.14   1.5e+02      94     121 ..     569     596 ..     505     602 .. 0.71
   5 ?    0.6   0.1       0.6   6.7e+02      40      72 ..     626     657 ..     619     680 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      DUF641  72 eeseleaeiqeqrsllktyeitvkkleaelkakdseieeLke 113
                  ++ l++  ++qr++ ++ ++ +++l++e++++d ei eL++
  CCE27088.1 120 MRTLLNKLDDDQRHKARVAQTQIEQLKSEIQRRDREIYELQN 161
                 344444444569***************************997 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.38
      DUF641  92 itvkkleaelkakdseieeLkekLeeaeksnkkle 126
                 +t++ le+el++ + e+ +L ++L++ ++   +l+
  CCE27088.1 320 TTTQLLEEELSSLQREVGKLTATLDSHKNLAARLK 354
                 56777888888888888888888888776665554 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.028
      DUF641  75 eleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeaeksnk 123
                 +l+++  +  s ++ y    ++l+++l a+ s ++eL++ +++a+++ +
  CCE27088.1 458 ALATKSSDDDSTIDEYHELEQSLRQQLGARVSAMDELRSDMTKAQRRLQ 506
                 566677778899999*****************************99865 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.14
      DUF641  94 vkkleaelkakdseieeLkekLeeaeks 121
                 +++  +el  +ds + eL+++L++++++
  CCE27088.1 569 ARRHGQELALRDSRVLELRAELDRVHAA 596
                 5666789999999999999999998775 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.6
      DUF641  40 qaADkavvseLkklselkrlyrkkqkkkaseae 72 
                 q A +a+  eL+++ ++ + ++++q  ++ + e
  CCE27088.1 626 QRAVDAIKMELQRVLHMSEAFLRSQGREEVP-E 657
                 4566778889*************99887662.2 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.7   0.00053       0.6       6      97 ..      98     184 ..      96     203 .. 0.61
   2 ?    5.7   0.0     0.018        20      46      86 ..     319     359 ..     292     363 .. 0.83
   3 ?    3.6  13.3     0.083        93      14     124 ..     459     563 ..     450     604 .. 0.82
   4 ?   -1.1   2.6       2.3   2.5e+03      16     130 ..     545     601 ..     537     655 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00053
      APG6_N   6 CtdlLleeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleae.laaleeelealeee 97 
                 C++  l   +    +  + r+++++ l+kl++++++      + + ++ ++e+l++e ++  +e+ el+++   ++ e + +le++  +l +e
  CCE27088.1  98 CSSYALHHTQDGRVERLQRRNSMRTLLNKLDDDQRH------KARVAQTQIEQLKSEIQRRDREIYELQNATVVIDTErIWDLEQQIGHLRDE 184
                 66666665555555666779999********99655......445555556666666666666666666555555544133444444444433 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.018
      APG6_N  46 deeleeleeeleklekeeeelleeLkelekereeleaelaa 86 
                 d+ ++ leeel+ l++e  +l + L+  ++  ++l+++la+
  CCE27088.1 319 DTTTQLLEEELSSLQREVGKLTATLDSHKNLAARLKQQLAT 359
                 56778899999999999999999999999999999999886 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.083
      APG6_N  14 ldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlel 112
                 l ++ ++ ++ +d+Y e ++ l+++        + ++el+ ++ k ++  ++ ++  +ele  +e+l+ +++ +e+ l++le+  +r     ne+  +l
  CCE27088.1 459 LATKSSDDDSTIDEYHELEQSLRQQLGAR---VSAMDELRSDMTKAQRRLQDEQARVQELEVGQERLRGAVEGYERDLAELEALVQRL---DNEHGAQL 551
                 55666777888999*********996664...57999999999999999999999999999999999999999999999998887765...55555566 PP

      APG6_N 113 leleeeldslea 124
                 + +++ l++le+
  CCE27088.1 552 AAKDQALAALEV 563
                 666666666555 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 2.3
      APG6_N  16 kqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelle 114
                 ++  ++ + +d+ ++ l+  +  +     + +el+  +                                                          +le
  CCE27088.1 545 NEHGAQLAAKDQALAALEVRQLGDARR--HGQELALRD--------------------------------------------------------SRVLE 585
                 444444444444444444433332221..222333333........................................................33333 PP

      APG6_N 115 leeeldsleaqyehaq 130
                 l  eld + a+++ a+
  CCE27088.1 586 LRAELDRVHAALRAAH 601
                 3333333333333333 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.6      0.32   3.5e+02      55     102 ..     136     184 ..     114     188 .. 0.54
   2 ?    1.9   0.0      0.19   2.1e+02      57      92 ..     325     360 ..     312     403 .. 0.76
   3 ?    9.9   0.9   0.00062       0.7      25     121 ..     445     544 ..     441     547 .. 0.73
   4 ?   -1.0   0.0       1.5   1.7e+03      87     115 ..     581     609 ..     568     618 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.32
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeikee.vtevredlseiged 102
                    +++ ++L+s+i+r d+++ e ++++  i+ e + ++++++ +++++
  CCE27088.1 136 RVAQTQIEQLKSEIQRRDREIYELQNATVVIDTErIWDLEQQIGHLRDE 184
                 2333334667777777777777766666666533266666666665555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.19
     DUF1664  57 laatkrhLssridrvdkkldeqkeiskeikeevtev 92 
                 l++    L++++ ++ ++ld+ k++++ +k+++++v
  CCE27088.1 325 LEEELSSLQREVGKLTATLDSHKNLAARLKQQLATV 360
                 344445566667777777777777766666666554 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00062
     DUF1664  25 GwklsdlmfvTkrslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikee...vtevredlseigedvesvkeavegleskleri 120
                 G ++ dl+ v  r l+   ++  + +++  e  ++ +++L +r+  +d+   +++++++ +++e   v+e++ + ++++  ve  ++   +le+ ++r+
  CCE27088.1 445 GAQVLDLLLVQLRALATKSSDDDSTIDEYHELEQSLRQQLGARVSAMDELRSDMTKAQRRLQDEqarVQELEVGQERLRGAVEGYERDLAELEALVQRL 543
                 777888888888888888888888888888888888999999999888888888777777765533366777777777777777777777777666666 PP

     DUF1664 121 e 121
                 +
  CCE27088.1 544 D 544
                 5 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.5
     DUF1664  87 eevtevredlseigedvesvkeavegles 115
                 + v e+r +l++++  +++ +++++ l  
  CCE27088.1 581 SRVLELRAELDRVHAALRAAHDTICRLRV 609
                 56778888888888888888888877765 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1      0.01        11      81     113 ..     132     164 ..     103     261 .. 0.81
   2 ?    1.8   0.4      0.16   1.8e+02       8      41 ..     323     356 ..     318     396 .. 0.69
   3 ?    7.1  19.8    0.0037       4.2      14     133 ..     491     611 ..     478     704 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.01
         ERM  81 erklreaeleaarleeeserkeeeaerLkeele 113
                  +k+r a+ ++++l++e +r+++e  +L++   
  CCE27088.1 132 RHKARVAQTQIEQLKSEIQRRDREIYELQNATV 164
                 578899999999999999999999999998654 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.16
         ERM   8 releerLkqlqeeaekaqeaLreseetaelLaek 41 
                 + lee+L +lq e+ k  + L   ++ a +L+++
  CCE27088.1 323 QLLEEELSSLQREVGKLTATLDSHKNLAARLKQQ 356
                 3345555555555555555555555555555444 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0037
         ERM  14 LkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreael.eaarleeeserkeeeaerLkee 111
                 + +l++++ kaq+ L++++ ++++L+  ++r++ + e  e++ ae+e+  qrl  ++ ++ + k++  + l+  +l  a+r  +e   +++ + +L++e
  CCE27088.1 491 MDELRSDMTKAQRRLQDEQARVQELEVGQERLRGAVEGYERDLAELEALVQRLDNEHGAQLAAKDQALAALEVRQLgDARRHGQELALRDSRVLELRAE 589
                 778999*****************************************************99999998888777766378888999999*********** PP

         ERM 112 leeareaeeeakekllealstp 133
                 l ++++a++ a   + ++  + 
  CCE27088.1 590 LDRVHAALRAAHDTICRLRVRH 611
                 ********99998777666555 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.9    0.0028       3.2     174     236 ..     115     178 ..     104     190 .. 0.69
   2 ?    3.1   0.1     0.033        37     197     231 ..     325     359 ..     310     428 .. 0.70
   3 ?    5.9   9.4    0.0046       5.2     139     303 ..     475     641 ..     452     646 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0028
        Spc7 174 eekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqe.qleeleeki 236
                 +++++++  l+kl + ++  + + ++++e+l++e+++ + ei e+++ +    + ++ +le++i
  CCE27088.1 115 QRRNSMRTLLNKLDDDQRHKARVAQTQIEQLKSEIQRRDREIYELQNATVVIDTeRIWDLEQQI 178
                 4566777788888888888888888999999999988888888877765544330334444444 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.033
        Spc7 197 dkeeLeelreelaelkaeieekkkelaelqeqlee 231
                  +eeL +l++e+ +l a+++++k+  a+l++ql++
  CCE27088.1 325 LEEELSSLQREVGKLTATLDSHKNLAARLKQQLAT 359
                 34555555555555555555555555555555544 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0046
        Spc7 139 gLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreela.elkaeieekkkelaelq.eqleeleek 235
                 +L+++l+++l +  +  ++L +++ ++++ l++ +++ +ele   e+l+ a+e   + d +eLe+l ++l+ e+ a++++k + la l+ +ql + +  
  CCE27088.1 475 ELEQSLRQQLGARVSAMDELRSDMTKAQRRLQDEQARVQELEVGQERLRGAVE-GYERDLAELEALVQRLDnEHGAQLAAKDQALAALEvRQLGDARRH 572
                 67777777777778888888888888888999999999999999999999665.566799999999999963688999999999999985689999999 PP

        Spc7 236 ieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleeltgwkivsls..gstleltyrsele 303
                  +el+ + s++ e  ae +rv  + +   ++ + rl+ ++  le   + + v+++   + +++++++ l+
  CCE27088.1 573 GQELALRDSRVLELRAELDRVHAALRA-AHDTICRLRVRHGGLETRRDAERVQAQraVDAIKMELQRVLH 641
                 999999999999999999998887765.567799999999999998888888888443347777777665 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.0   0.00019      0.22      18      74 ..     106     162 ..     100     187 .. 0.80
   2 ?    7.3   0.4    0.0066       7.4      53      91 ..     321     359 ..     310     362 .. 0.91
   3 ?    3.1   4.8      0.13   1.4e+02      34      91 ..     471     528 ..     461     536 .. 0.77
   4 ?    0.1   0.1       1.1   1.2e+03      30      58 ..     534     562 ..     521     620 .. 0.60
   5 ?   -1.3   0.1         3   3.4e+03      20      36 ..     624     640 ..     614     653 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00019
  HIP1_clath_bdg  18 arqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkss 74 
                     ++  + e  + ++ + + l++l +++++k +  ++++e+Lk+e++++  e+ +l+++
      CCE27088.1 106 TQDGRVERLQRRNSMRTLLNKLDDDQRHKARVAQTQIEQLKSEIQRRDREIYELQNA 162
                     66666677778999**************************************99975 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0066
  HIP1_clath_bdg  53 elekLkreleakraelarlkssLesseqsgeqlssqlaa 91 
                     +++ L++el + + e+ +l ++L+s+++  ++l++qla+
      CCE27088.1 321 TTQLLEEELSSLQREVGKLTATLDSHKNLAARLKQQLAT 359
                     567899******************************986 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.13
  HIP1_clath_bdg  34 eelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaa 91 
                     +e ++l+++ +++l  + + +++L++++++ + +l+  ++ +++ e  +e+l   +++
      CCE27088.1 471 DEYHELEQSLRQQLGARVSAMDELRSDMTKAQRRLQDEQARVQELEVGQERLRGAVEG 528
                     5667788888888888889999999999999999998888888888777777776666 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.1
  HIP1_clath_bdg  30 keleeelerlkeeaerkleeqkeelekLk 58 
                      ele  ++rl +e+  +l+ + + l +L+
      CCE27088.1 534 AELEALVQRLDNEHGAQLAAKDQALAALE 562
                     45555555555555555554444444443 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 3
  HIP1_clath_bdg  20 qaqeeverekkeleeel 36 
                     qaq  v++ k el++ l
      CCE27088.1 624 QAQRAVDAIKMELQRVL 640
                     56666666666666554 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       1.2   1.3e+03      29      51 ..     139     161 ..     132     169 .. 0.66
   2 ?    3.8   0.1     0.048        54      42      58 ..     325     341 ..     320     347 .. 0.87
   3 ?    7.4   1.1    0.0034       3.8       9      58 ..     464     514 ..     458     519 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.2
      GIT_CC  29 eakiqqLlkvNtslsdelrlLQs 51 
                   +i+qL+   +   +e+ +LQ+
  CCE27088.1 139 QTQIEQLKSEIQRRDREIYELQN 161
                 55666666666666667777776 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.048
      GIT_CC  42 lsdelrlLQskvqkLqa 58 
                 l++el+ LQ++v kL a
  CCE27088.1 325 LEEELSSLQREVGKLTA 341
                 789***********976 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0034
      GIT_CC   9 sdgpVtleeylelKkala.aseakiqqLlkvNtslsdelrlLQskvqkLqa 58 
                 sd+  t++ey el + l    +a++ ++ +  + +++  r+LQ ++ + q+
  CCE27088.1 464 SDDDSTIDEYHELEQSLRqQLGARVSAMDELRSDMTKAQRRLQDEQARVQE 514
                 78888***********96268***********************9998875 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   1.1      0.12   1.4e+02      38      86 ..     119     168 ..     110     185 .. 0.61
   2 ?    1.1   0.0      0.44   4.9e+02      26      65 ..     326     358 ..     315     402 .. 0.64
   3 ?    7.3   1.2    0.0051       5.7      37      86 ..     496     545 ..     463     553 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.12
     BLOC1_2  38 klkdvaaslekkleklnekye.elqpylqqidqiekqvteLeeavseLDe 86 
                 ++++ +++l ++  +  +  + ++++++++i++ ++++ eL++a  ++D+
  CCE27088.1 119 SMRTLLNKLDDDQRHKARVAQtQIEQLKSEIQRRDREIYELQNATVVIDT 168
                 55555555555554444444436777777777777777777776666663 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.44
     BLOC1_2  26 eklNeaasekykklkdvaaslekkleklnekyeelqpylq 65 
                 e+   + ++++ kl+  ++s ++ + +l++       +l 
  CCE27088.1 326 EEELSSLQREVGKLTATLDSHKNLAARLKQ-------QLA 358
                 333333333333333333333333333333.......333 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0051
     BLOC1_2  37 kklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDe 86 
                  +++++   l+++  +++e++   + +   ++  e++++eLe++v++LD+
  CCE27088.1 496 SDMTKAQRRLQDEQARVQELEVGQERLRGAVEGYERDLAELEALVQRLDN 545
                 35555555666666666666666667889999999999999999999996 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.4    0.0052       5.8     128     208 ..      92     179 ..      82     228 .. 0.53
   2 ?    0.4  15.2      0.34   3.8e+02     147     240 ..     489     591 ..     253     643 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0052
  Exonuc_VII_L 128 apTPtaaAelvvpdkael.......eeqleelerrlekaikrlleekkqrleklasrlk.speellerkrqrldeleerleralkkqlk 208
                   a  Pta  ++++++ ++        ++++++l ++l++  +++ + +++++e+l+s+++ + +e++e ++  +   +er+   l++q+ 
    CCE27088.1  92 ATAPTACSSYALHHTQDGrverlqrRNSMRTLLNKLDDDQRHKARVAQTQIEQLKSEIQrRDREIYELQNATVVIDTERIWD-LEQQIG 179
                   6778888888887766664444444444444444555555555555555555555555423333333332222221222222.222222 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.34
  Exonuc_VII_L 147 eqleelerrlekaikrlleekkqrlekl...asrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlk.......ekleekkerlk 233
                   + ++el++ ++ka +r+l+++++r+++l   ++rl+ + e +er+  +l+ l +rl++++  ql++k ++l  l+ r         ++l+ +++r+ 
    CCE27088.1 489 SAMDELRSDMTKA-QRRLQDEQARVQELevgQERLRGAVEGYERDLAELEALVQRLDNEHGAQLAAKDQALAALEVRQLgdarrhgQELALRDSRVL 584
                   1122222222222.23444444455544333355555555555555556666667777666667777777776663321223333322222233333 PP

  Exonuc_VII_L 234 klkerle 240
                   +l+++l+
    CCE27088.1 585 ELRAELD 591
                   3333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1394  (0.0777511); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.46
# Mc/sec: 4925.03
//
Query:       CCE27089.1  [L=494]
Description: uncharacterized protein CPUR_00561 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00097   18.8   0.1     0.0016   18.1   0.1    1.2  1  tRNA_anti-like  tRNA_anti-like


Domain annotation for each model (and alignments):
>> tRNA_anti-like  tRNA_anti-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   8.6e-08    0.0016       6      83 ..      66     164 ..      64     165 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 8.6e-08
                     XXXXXXXXXXXXXXXXXXXX..........................XXXXXXXXXXXX---HHHHHTS-..............EEEHHHHHHHHH CS
  tRNA_anti-like   6 kkilviilivilllfvialv..........................aqaaesardkekaekedadatlaeakakpeavaekasqisArdLlaeYd 74 
                     +k++++ l+ +l+ fv+  +                           + a+s r+++k+   +a+at    +++pea a++   +++ +L++++ 
      CCE27089.1  66 RKWVLWSLAGALVFFVVT-GliimavmlklelgkkaasddtsafgtTVTASSTRAASKKGDNSATAT----SSEPEATATPFTMLATSQLASAFV 155
                     567777777766666655.445666699999*********996655555555555555555555555....57********************** PP

                     H-HHHHHHH CS
  tRNA_anti-like  75 kNevkadkk 83 
                     k + +a+++
      CCE27089.1 156 KTNDAAQTR 164
                     *99999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3583.25
//
Query:       CCE27090.1  [L=688]
Description: uncharacterized protein CPUR_00562 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-08   33.3   0.1    4.5e-08   32.5   0.1    1.3  1  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
       0.26   11.4   5.6       0.74   10.0   5.6    1.8  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1     5e-12   4.5e-08       4     185 ..     229     397 ..     227     401 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 5e-12
  Fungal_trans   4 ffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeili.........hedfsspsssl 91 
                   + +  hp fp++  +++ ++         ++ s++ l   ++l+a   ++ t     + +    +     l+a+i++           + s  +++ 
    CCE27090.1 229 YIQKMHPIFPVIPIHKLENTL--------DHPSSIILRQLVCLAAAADPTLTEHFRLQNRG---PG---LLSAQIFSqtlsssvraVLETSLITERA 311
                   666778888888888888888........99999999999999999999998888777777...33...4788888877778788744555555556 PP

  Fungal_trans  92 wilqsLlllelyektss..dralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpL 185
                    ++q+L +l+ly + ++  + +l   + g a++ +++lgLh +  +        ++ee    + +l+++a+ lD++ a  +Grp l+++ +i + L
    CCE27090.1 312 LHIQALIMLSLYTQPTCveEADLPAQLGGRAIHHVQTLGLHLERCDAP------RDEE----LENLFCCAWALDRINAAEYGRPCLIHERDIGVDL 397
                   99***************644666666***************9997766......5555....788*************************998765 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.6   8.3e-05      0.74       1      13 [.      30      42 ..      30      49 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 8.3e-05
                SS-HHHHHCT--- CS
     Zn_clus  1 haCdnCrkkKvKC 13
                +aC  Cr+kK++C
  CCE27090.1 30 QACAACRRKKRRC 42
                69*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4986.52
//
Query:       CCE27091.1  [L=96]
Description: uncharacterized protein CPUR_00563 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-09   36.1   0.0    7.9e-09   35.6   0.0    1.2  1  Mrx7      MIOREX complex component 7


Domain annotation for each model (and alignments):
>> Mrx7  MIOREX complex component 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   4.4e-13   7.9e-09       8      65 ..      22      80 ..      18      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 4.4e-13
        Mrx7  8 LLeSpgFhrfVrkihakvngikete.iseekqesellykptrrqklkaFrklFldElkn 65
                 L+ pgFhr+V +ih+ +++ k+   ++e     e + +p+ +++ + F  +F+dElk+
  CCE27091.1 22 ILRQPGFHRAVGRIHRTIHERKHGRnPNEPLAPGEATADPELTERRQTFTRHFIDELKR 80
                67889******************99666699999************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 777.80
//
Query:       CCE27092.1  [L=172]
Description: uncharacterized protein CPUR_00564 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-48  162.4   0.0      1e-47  162.3   0.0    1.0  1  DUF1993   Domain of unknown function (DUF1993)


Domain annotation for each model (and alignments):
>> DUF1993  Domain of unknown function (DUF1993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3   0.0   5.7e-52     1e-47       1     161 []       6     162 ..       6     162 .. 0.99

  Alignments for each domain:
  == domain 1  score: 162.3 bits;  conditional E-value: 5.7e-52
                 HHHHCHHHHHHHHHHHHHHHHHHHCCHHHHC..HHHHHT--SSTTS--HHHHHHHHHHHHHHHHCHHCT-GS----S.-SSHHHHHHHHHHHHHHHHCS CS
     DUF1993   1 lydasvpvfikglknlsalLkkaeahaaakkidpeellearLapDMlpLsfQvqiatdtakkavarlagkeppsledeektfadlrariaktialLesv 99 
                 +ydas+ + ++++++l+++Lkk+++  +a++     l ear+++DMlpLsfQv++atd a+k+var++g+ep ++e++ ktf+++ +ri+kt+++L+++
  CCE27092.1   6 FYDASISLTQEAVESLKSILKKGSEAPNAAS-----LPEARIFEDMLPLSFQVHFATDLAQKLVARASGTEPLTFENNLKTFDEFFDRIDKTLEVLAKA 99 
                 7****************************98.....*************************************************************** PP

                 -GGGHCCCCCEEEE.C..CCCCEEEEHHHHHHHTHHHHHHHHHHHHHHHHHHCT----HHHHH CS
     DUF1993 100 dpekldakeekevelkl.ggkeleftgeeyllefalPnfyFHlttaYaILRkkGVelGkaDyl 161
                 d++ ++++ ++ v++ + + +e +++ ++yl  f+lPn++FH+ttaY+I+Rk+GV+lGk++yl
  CCE27092.1 100 DKDVVNKRVDEIVTFGMgPTREGKLPTRHYLSGFILPNLFFHITTAYNIMRKEGVPLGKMEYL 162
                 *****************9999*****************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1301.24
//
Query:       CCE27093.1  [L=517]
Description: uncharacterized protein CPUR_00565 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.7e-158  526.0   0.0   6.7e-158  525.8   0.0    1.0  1  DUF1479   Protein of unknown function (DUF1479)
  ------ inclusion threshold ------
      0.047   13.9   0.1        3.4    7.9   0.0    2.3  2  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> DUF1479  Protein of unknown function (DUF1479)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  525.8   0.0  7.5e-162  6.7e-158       2     415 ..      70     490 ..      69     491 .. 0.96

  Alignments for each domain:
  == domain 1  score: 525.8 bits;  conditional E-value: 7.5e-162
                 THHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHTT--SS-EEEHHHHHCT---HHHHHHHHHHTEEEEETSS-HHHHHHHHHHHHHHHH CS
     DUF1479   2 pLpsrfadlkrkLveeeakeeevkaswerlikaleeeieeikekgseliPeidfkdieegavsaefsaeikrrGvlvvrgvvpeeeaeewkeeikeYle 100
                  Lp+rf++lk  L+   ++e+++ +sw+rl+++l++e e i+ kgs++iP+++f ++++g    e ++eik+rGv+vv+gvvpe ea+++kee++eY++
  CCE27093.1  70 ALPDRFRQLKCDLI--RGREKKIVESWTRLLRKLRTENEVIALKGSDVIPQVEFTHLDTG--LCELKDEIKKRGVVVVKGVVPEAEARAYKEEVEEYVR 164
                 79************..9******************************************9..899********************************** PP

                 HTSSHHHTTSSS-CEE-----HHHHHHHCSHHHHHHHHHHH.TTSB-ETTEESSEEEEE------EEEE-TT--B--ECCEESS-STHHHH-HHH..HH CS
     DUF1479 101 knsdikglpkekpqiyelyWskaqvkaRahpnvlaaqkfln.slwesedekkrislatpitYaDrlrirkpgdasfaLgphvDgGsleRWedeeY..rk 196
                 kn+ ++ +p++ pq+yelyWs +q+kaR+hp++l +q+ l+ s+w++++ek++isl++p++YaDrlrir+pgda+faLgph+DgGs+eRWe ++Y   +
  CCE27093.1 165 KNPWTRAFPADTPQVYELYWSGPQLKARSHPSLLYMQQRLMsSIWHTSSEKTQISLHNPLSYADRLRIRQPGDATFALGPHMDGGSVERWERNGYgkGG 263
                 **********************************998776648****************************************************9999 PP

                 HTHHHHTS-GGG--TTB-TTGGG-----..STT--SS--SEEEEEESS-B-TTCT-EEE-S-TT.HHHHHHHHCCSTTS-................... CS
     DUF1479 197 vYkkvfeGeweeydpwdaaeRveakedlyngagacsvfRtfQGwlalsdvkpgeGtlrvlPlvklataYllLRpffeekkeeeelaee..........l 285
                 vY+k+++G+we+ydpwda++Rv+a ++ly+g g cs+fR++QGw+++s+++p+eGtl v+Pl++ ataY+lLRpff++  ++++               
  CCE27093.1 264 VYDKIWDGDWENYDPWDASGRVDAVNNLYDGLGPCSMFRMWQGWMSMSHTGPHEGTLLVNPLMHIATAYVLLRPFFSPLLQSSDP--GfldeghwrftG 360
                 *****************************************************************************98755543..134669999988 PP

                 ....TT-STT--TTS-EE--TTT-HH..HHTT-EE---B-TT-EEEEETT--EEE-SBCSSSS-EEEEE--B-EESHHHHHHHHHHHHHHHHT---TTS CS
     DUF1479 286 keeqdsklpgavpgsaqelteelhphLelketlvsiPdleaGDyvvWhcdlihavdkehegkkdssvlYipavPltqknaeylarqrkaflrgkpppDF 384
                 +  ++s+l+ga+pg++qelt+elhphLel++t+++iP++++GD+v+Whcd+ih+vdk+h+g++dssvlYip +P+t +na ylarqr+af++g+p+pDF
  CCE27093.1 361 EGAMTSELQGASPGHGQELTDELHPHLELNRTMIHIPKISPGDFVAWHCDAIHSVDKVHNGTGDSSVLYIPVCPVTDTNAVYLARQRQAFRHGTPGPDF 459
                 8899*********************************************************************************************** PP

                 -S--G...GGG-TT---GGG--HH....HHHCTT CS
     DUF1479 385 psegsGlgeaefagrlteedlrev...eGlralg 415
                 p  g G+ge++++gr te++lr      G++a+g
  CCE27093.1 460 P--G-GEGESRHVGRPTEDMLRGWadgVGQQAVG 490
                 *..6.9***************9986555666655 PP

>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00038       3.4       2      32 ..     136     163 ..     135     217 .. 0.85
   2 ?    3.7   0.2    0.0072        65     184     199 ..     399     414 ..     372     423 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00038
                 HHHSEEEETTSS-HHHHHHHHHHHHHHHHHC CS
        PhyH   2 eedGylviegflsaeevealraeiealldra 32 
                 ++ G++v++g+++++e +a+++e+e++    
  CCE27093.1 136 KKRGVVVVKGVVPEAEARAYKEEVEEY---V 163
                 578**********************97...2 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0072
                 BTTTEEEEEETTSEEE CS
        PhyH 184 vkaGdavlfhgrllHg 199
                 +++Gd+v +h++ +H 
  CCE27093.1 399 ISPGDFVAWHCDAIHS 414
                 7899999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 4260.63
//
Query:       CCE27094.1  [L=1476]
Description: probable apsB protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-22   77.5   8.9    6.5e-22   77.5   8.9   12.4 13  Cnn_1N          Centrosomin N-terminal motif 1
    1.1e-09   38.4  10.9    1.1e-09   38.4  10.9   13.1 16  Mto2_bdg        Micro-tubular organiser Mto1 C-term Mto2-bind
     0.0017   18.9  12.7     0.0017   18.9  12.7   11.8 12  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
     0.0022   18.0   0.9     0.0022   18.0   0.9    6.2  7  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
  ------ inclusion threshold ------
       0.19   12.3   0.1       0.19   12.3   0.1   10.6 10  APG6_N          Apg6 coiled-coil region
        5.8    7.0   9.6        1.4    9.0   1.0    3.4  3  GUN4_N          ARM-like repeat domain, GUN4-N terminal


Domain annotation for each model (and alignments):
>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   8.9   2.2e-25   6.5e-22       1      72 [.     396     467 ..     396     468 .. 0.99
   2 ?   -1.9   1.2       1.3   3.9e+03      23      49 ..     499     524 ..     482     540 .. 0.55
   3 ?    3.5   0.2     0.026        78      31      60 ..     558     587 ..     551     597 .. 0.82
   4 ?    2.5   0.7     0.053   1.6e+02      39      69 ..     639     669 ..     625     686 .. 0.77
   5 ?    2.3   5.4     0.063   1.9e+02      36      66 ..     731     761 ..     670     773 .. 0.73
   6 ?    1.0   2.3      0.16   4.8e+02      38      64 ..     803     829 ..     783     858 .. 0.60
   7 ?    1.6  10.0      0.11   3.2e+02      15      71 ..     854     910 ..     847     912 .. 0.74
   8 ?    1.4   8.7      0.12   3.6e+02      22      67 ..     960    1012 ..     923    1018 .. 0.73
   9 !    9.3   2.0    0.0004       1.2      22      71 ..    1024    1076 ..    1017    1078 .. 0.83
  10 ?   -1.9   0.3       1.3   3.9e+03      50      70 ..    1150    1170 ..    1104    1173 .. 0.69
  11 ?   -0.4   0.3      0.44   1.3e+03      41      71 ..    1228    1258 ..    1216    1262 .. 0.78
  12 ?   -2.2   0.0       1.6   4.8e+03      46      58 ..    1286    1298 ..    1274    1305 .. 0.77
  13 ?   -2.1   0.3       1.5   4.4e+03      29      59 ..    1437    1468 ..    1424    1474 .. 0.53

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 2.2e-25
      Cnn_1N   1 TlrEqeeqidkLkKENFdLKLriyfLeerleklseeqkeellkenielkveveslqkelkekkkllreaeka 72 
                 Tl+Eq+++i++L+KENFdLKL+++fL +rl++lsee ++e+++en+elk+ ++ lq+++k ++k+++e+ek+
  CCE27094.1 396 TLKEQSSTIERLSKENFDLKLKVMFLSDRLDRLSEEGIKEMISENVELKTSLAVLQRDNKVLRKRVKELEKQ 467
                 9*********************************************************************97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
      Cnn_1N  23 iyfLeerleklseeqkeellkenielk 49 
                 + fL+er+e+ ++ ++e+l  e    +
  CCE27094.1 499 VLFLRERVEEYAS-DIEKLRTESLSRE 524
                 3455555555444.4444444444333 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.026
      Cnn_1N  31 eklseeqkeellkenielkveveslqkelk 60 
                  + ++  +e++ +en  l++e  +l++el 
  CCE27094.1 558 LEQETARREQADEENRRLRDETFKLKRELS 587
                 45556689999999999*999999999986 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.053
      Cnn_1N  39 eellkenielkveveslqkelkekkkllrea 69 
                 ++l  e  +l+ e+++l++e+ + + +l++ 
  CCE27094.1 639 DQLRHESEQLRHENAELRREVGAQTSMLTSR 669
                 6677777788888888888877777776654 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.063
      Cnn_1N  36 eqkeellkenielkveveslqkelkekkkll 66 
                 +++eel++++ el++++ s + +++e++++l
  CCE27094.1 731 TEREELENKLAELRDKLSSAKLQNQEMQREL 761
                 3455666666666666666666666555555 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.16
      Cnn_1N  38 keellkenielkveveslqkelkekkk 64 
                 ++e+++e  +++ + e l++e +   +
  CCE27094.1 803 RDEAIREQGDMESQFEALRREAQDEID 829
                 555555555555555555555544333 PP

  == domain 7  score: 1.6 bits;  conditional E-value: 0.11
      Cnn_1N  15 ENFd.LKLriyfLeerleklseeqkeellkenielkveveslqkelkekkkllreaek 71 
                 ENFd L+ +   + e+l +l++eq  +l +   +l++e+ s  kel+e++++l +a++
  CCE27094.1 854 ENFDaLQGEMRKMSEALVRLEDEQDSKL-RRIKQLEEELDSSNKELEELEQKLLDANE 910
                 5555555666667777777777555555.55999999999999999999999999976 PP

  == domain 8  score: 1.4 bits;  conditional E-value: 0.12
      Cnn_1N   22 riyfLeerleklse.......eqkeellkenielkveveslqkelkekkkllr 67  
                  r+ +L++rl++ +e       ++kee+ +   el  ev s  +e+ +++k+l 
  CCE27094.1  960 RVRELDNRLHQEREqreivadKEKEEVQQVVDELNREVSSAHDEVRRLRKSLS 1012
                  67889999999999555555555666666666666666666666666666665 PP

  == domain 9  score: 9.3 bits;  conditional E-value: 0.0004
      Cnn_1N   22 riyfLeerleklse...eqkeellkenielkveveslqkelkekkkllreaek 71  
                  r+++Le++l +       ++ +llk+  +++ e+e+  +el+++k +l e e+
  CCE27094.1 1024 RLNELENNLREALGdlnGTRSSLLKSIAKMQRELENTVRELDTCKASLAEKER 1076
                  566666666555447889******************************99886 PP

  == domain 10  score: -1.9 bits;  conditional E-value: 1.3
      Cnn_1N   50 veveslqkelkekkkllreae 70  
                  +  +s +++l e+++ll +++
  CCE27094.1 1150 QLEQSARDQLTERNELLLKLW 1170
                  333455666666666666665 PP

  == domain 11  score: -0.4 bits;  conditional E-value: 0.44
      Cnn_1N   41 llkenielkveveslqkelkekkkllreaek 71  
                  +++   +l  e ++l++ l+ + k+l+++e+
  CCE27094.1 1228 IHSVERDLNKEYQTLENNLDVRVKKLDRLET 1258
                  5556668888889999999888888888775 PP

  == domain 12  score: -2.2 bits;  conditional E-value: 1.6
      Cnn_1N   46 ielkveveslqke 58  
                   +lkve+++l+  
  CCE27094.1 1286 RQLKVENATLRTA 1298
                  5899999999875 PP

  == domain 13  score: -2.1 bits;  conditional E-value: 1.5
      Cnn_1N   29 rleklse.eqkeellkenielkveveslqkel 59  
                  ++e+ +  ++++++ + +  l+ e+ +l++ +
  CCE27094.1 1437 KMEREGRnQDRQAARQRLGGLEMENRDLRDRV 1468
                  33332224555666666666666666666655 PP

>> Mto2_bdg  Micro-tubular organiser Mto1 C-term Mto2-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0         6   1.8e+04      31      42 ..     404     415 ..     401     416 .. 0.77
   2 ?    0.9   0.2       0.2   5.9e+02      29      50 ..     431     452 ..     424     454 .. 0.81
   3 ?    0.3   0.4       0.3   9.1e+02       4      23 ..     459     477 ..     457     493 .. 0.72
   4 ?   -1.5   2.1       1.1   3.2e+03      29      45 ..     563     579 ..     561     586 .. 0.73
   5 ?    1.5   0.8      0.13   3.9e+02      29      45 ..     643     659 ..     640     666 .. 0.83
   6 ?   -2.3   0.1       1.9   5.7e+03      31      51 ..     666     686 ..     663     687 .. 0.83
   7 ?   -3.7   2.7       5.2   1.6e+04      28      46 ..     744     762 ..     731     763 .. 0.75
   8 ?   -4.4   4.4         6   1.8e+04      20      42 ..     880     902 ..     863     916 .. 0.60
   9 ?   -2.1   0.5       1.7     5e+03       6      14 ..     898     906 ..     895     932 .. 0.68
  10 ?    3.2   3.4     0.037   1.1e+02       4      22 ..     959     977 ..     958     999 .. 0.83
  11 ?    2.4   2.0     0.067     2e+02       2      35 ..    1021    1054 ..    1020    1070 .. 0.70
  12 ?   -3.5   1.2       4.5   1.3e+04      24      35 ..    1152    1163 ..    1135    1166 .. 0.52
  13 ?   -0.8   0.1      0.64   1.9e+03       1      12 [.    1251    1262 ..    1251    1265 .. 0.90
  14 ?    2.6   0.5     0.055   1.6e+02       3      31 ..    1278    1305 ..    1276    1314 .. 0.81
  15 ?   -0.2   0.2      0.41   1.2e+03      15      47 ..    1345    1376 ..    1341    1380 .. 0.79
  16 !   38.4  10.9   3.6e-13   1.1e-09       1      44 [.    1424    1467 ..    1424    1473 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 6
    Mto2_bdg  31 LeelkaeNrlLk 42 
                 +e l +eN +Lk
  CCE27094.1 404 IERLSKENFDLK 415
                 677888998886 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.2
    Mto2_bdg  29 erLeelkaeNrlLkaeLerdrs 50 
                 e ++e + eN +Lk+ L+ ++ 
  CCE27094.1 431 EGIKEMISENVELKTSLAVLQR 452
                 55889999*********98875 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.3
    Mto2_bdg   4 eRLreLerqLkaereaRlld 23 
                 +R +eLe+q k + + R  +
  CCE27094.1 459 KRVKELEKQAKEDEQ-RPST 477
                 699******997654.4433 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.1
    Mto2_bdg  29 erLeelkaeNrlLkaeL 45 
                 +r e+ ++eNr+L+ e 
  CCE27094.1 563 ARREQADEENRRLRDET 579
                 566788999**999775 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.13
    Mto2_bdg  29 erLeelkaeNrlLkaeL 45 
                  + e+l+ eN++L++e 
  CCE27094.1 643 HESEQLRHENAELRREV 659
                 56689*********997 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 1.9
    Mto2_bdg  31 LeelkaeNrlLkaeLerdrsh 51 
                 L  +++e ++L  e+e +++ 
  CCE27094.1 666 LTSRNREKERLYQEIEDLKMA 686
                 677899999999999999986 PP

  == domain 7  score: -3.7 bits;  conditional E-value: 5.2
    Mto2_bdg  28 rerLeelkaeNrlLkaeLe 46 
                 r +L+  k +N++ ++eLe
  CCE27094.1 744 RDKLSSAKLQNQEMQRELE 762
                 6677777888888888886 PP

  == domain 8  score: -4.4 bits;  conditional E-value: 6
    Mto2_bdg  20 RlldrsgarerLeelkaeNrlLk 42 
                  l+  +   e+L+  ++e ++L+
  CCE27094.1 880 KLRRIKQLEEELDSSNKELEELE 902
                 44444444444444444444443 PP

  == domain 9  score: -2.1 bits;  conditional E-value: 1.7
    Mto2_bdg   6 LreLerqLk 14 
                 L+eLe++L 
  CCE27094.1 898 LEELEQKLL 906
                 899999983 PP

  == domain 10  score: 3.2 bits;  conditional E-value: 0.037
    Mto2_bdg   4 eRLreLerqLkaereaRll 22 
                 eR reL  +L  ere+R  
  CCE27094.1 959 ERVRELDNRLHQEREQREI 977
                 79**************975 PP

  == domain 11  score: 2.4 bits;  conditional E-value: 0.067
    Mto2_bdg    2 wleRLreLerqLkaereaRlldrsgarerLeelk 35  
                  w eRL eLe +L+      + +rs+  + +++ +
  CCE27094.1 1021 WKERLNELENNLREALGDLNGTRSSLLKSIAKMQ 1054
                  99**********8665555666666666665555 PP

  == domain 12  score: -3.5 bits;  conditional E-value: 4.5
    Mto2_bdg   24 rsgarerLeelk 35  
                   ++ar  L e++
  CCE27094.1 1152 EQSARDQLTERN 1163
                  245555555554 PP

  == domain 13  score: -0.8 bits;  conditional E-value: 0.64
    Mto2_bdg    1 kwleRLreLerq 12  
                  k+l+RL+ + r+
  CCE27094.1 1251 KKLDRLETMLRN 1262
                  89*****99886 PP

  == domain 14  score: 2.6 bits;  conditional E-value: 0.055
    Mto2_bdg    3 leRLreLerqLkaereaRlldrsgarerL 31  
                  + RL++  rqLk e  a l++ s +r r 
  CCE27094.1 1278 MLRLEDAYRQLKVEN-ATLRTASDVRTRA 1305
                  67************9.9999988888775 PP

  == domain 15  score: -0.2 bits;  conditional E-value: 0.41
    Mto2_bdg   15 aereaRlldrsgarerLeelkaeNrlLkaeLer 47  
                  +++ a++  rsga+ r +   +  r L+ +L++
  CCE27094.1 1345 SSQ-AAKSSRSGASSRANTSSGIPRPLSENLNL 1376
                  556.99*********988888777777777776 PP

  == domain 16  score: 38.4 bits;  conditional E-value: 3.6e-13
    Mto2_bdg    1 kwleRLreLerqLkaereaRlldrsgarerLeelkaeNrlLkae 44  
                  +wl RLr++e +Lk ere+R+ dr+ ar+rL  l+ eNr+L+  
  CCE27094.1 1424 RWLLRLRDMEYKLKMEREGRNQDRQAARQRLGGLEMENRDLRDR 1467
                  7****************************************965 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.8      0.43   1.3e+03      44      81 ..     394     431 ..     388     457 .. 0.64
   2 ?   -6.1  11.8         6   1.8e+04      11      99 .]     443     530 ..     434     530 .. 0.61
   3 ?    5.0   3.0     0.013        39       6      79 ..     528     604 ..     527     612 .. 0.75
   4 ?    4.2   1.9     0.022        67      48      94 ..     639     685 ..     626     689 .. 0.84
   5 ?    3.5  11.2     0.035   1.1e+02      21      98 ..     732     805 ..     726     806 .. 0.64
   6 !    8.9  11.1   0.00076       2.3      18      98 ..     799     879 ..     796     881 .. 0.95
   7 ?    1.1  11.7       0.2     6e+02      33      90 ..     860     920 ..     857     935 .. 0.66
   8 !   18.9  12.7   5.8e-07    0.0017      17      94 ..     950    1030 ..     939    1036 .. 0.78
   9 !    7.0   1.2    0.0031       9.1      53      89 ..    1049    1085 ..    1042    1095 .. 0.85
  10 ?   -2.1   4.4       2.1   6.1e+03      35      79 ..    1115    1159 ..    1091    1170 .. 0.56
  11 ?    2.4   0.3     0.081   2.4e+02      32      84 ..    1217    1269 ..    1208    1285 .. 0.78
  12 ?   -1.8   0.6       1.7     5e+03      56      91 ..    1435    1470 ..    1417    1476 .] 0.60

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.43
  HIP1_clath_bdg  44 erkleeqkeelekLkreleakraelarlkssLesseqs 81 
                     +  l+eq++++e+L +e  + + ++  l   L++  ++
      CCE27094.1 394 NLTLKEQSSTIERLSKENFDLKLKVMFLSDRLDRLSEE 431
                     56788999999999999888888777777777654333 PP

  == domain 2  score: -6.1 bits;  conditional E-value: 6
  HIP1_clath_bdg  11 vtkqlsvarqaqeeverekkeleeelerlkeeaer.kleeqkeelekLk.releakraelarlkssLesseqsgeqlssqlaaLqaEkesL 99 
                     + + l v +   + + +  kele++   +ke+++r  +++ + ++ kL  +e  ++++e+  l++ +e+ +   e+l ++  + ++Ek +L
      CCE27094.1 443 LKTSLAVLQRDNKVLRKRVKELEKQ---AKEDEQRpSTADSADQTAKLSdEEAYEREQEVLFLRERVEEYASDIEKLRTESLSRESEKRRL 530
                     4444444444444444444444444...444433314446667777776155678889999999999999998888888777777777665 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.013
  HIP1_clath_bdg   6 rKnAevtkqls....varqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesse 79 
                     r+ Ae++k ls    ++  +qee e  k+ le+e  r +e+a+++ +  + e+ kLkrel  +   l++  +  + s+
      CCE27094.1 528 RRLAEIVKTLSertgASLGQQEEFEVWKDLLEQETAR-REQADEENRRLRDETFKLKRELSGQGGPLQHTTNIYNMSK 604
                     566888888872222344689************9988.67777777777788888*****999988888877766655 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.022
  HIP1_clath_bdg  48 eeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLqa 94 
                     ++ + e e+L++e ++ r e+    s L+s+++++e+l +++++L++
      CCE27094.1 639 DQLRHESEQLRHENAELRREVGAQTSMLTSRNREKERLYQEIEDLKM 685
                     45577889999999999999999999999999999999999999875 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.035
  HIP1_clath_bdg  21 aqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLqaEkes 98 
                     ++ee+e++  el ++l ++k +++++ +e ++ +e +++ +e kr+     +s+L+ +e  ++ ++  l aLqaE+++
      CCE27094.1 732 EREELENKLAELRDKLSSAKLQNQEMQRELESCMEDFEAAVEGKRQ---AEESTLAVQEDLDTAMN-DLVALQAERDE 805
                     4556666666666666666666666666666666666666655554...34567888887777765.7999****985 PP

  == domain 6  score: 8.9 bits;  conditional E-value: 0.00076
  HIP1_clath_bdg  18 arqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLqaEkes 98 
                      +++++e  re+ ++e ++e+l++ea+ +++  + e ++ ++e+++++ael    +  +  + +  ++s+ l  L+ E++s
      CCE27094.1 799 LQAERDEAIREQGDMESQFEALRREAQDEIDALEAEADHRNEEIQRTQAELRDRLENFDALQGEMRKMSEALVRLEDEQDS 879
                     688999************************************************************************985 PP

  == domain 7  score: 1.1 bits;  conditional E-value: 0.2
  HIP1_clath_bdg  33 eeelerlkeeaerkleeqke...elekLkreleakraelarlkssLesseqsgeqlssqla 90 
                     + e+++++e   r ++eq +    +++L++el ++++el++l++ L + ++++++ s q +
      CCE27094.1 860 QGEMRKMSEALVRLEDEQDSklrRIKQLEEELDSSNKELEELEQKLLDANEKNQRFSIQQE 920
                     455555555555555555440014677888999*******999999888888877776654 PP

  == domain 8  score: 18.9 bits;  conditional E-value: 5.8e-07
  HIP1_clath_bdg   17 varqaqeeverekkeleeelerlkeeae....rkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLqa 94  
                      + ++ qee er++ el+++l++ +e++e    ++ ee ++ +++L+re+ + ++e+ rl++sL+s+e + ++++++l++L++
      CCE27094.1  950 AEQNLQEEKERVR-ELDNRLHQEREQREivadKEKEEVQQVVDELNREVSSAHDEVRRLRKSLSSREVEATEWKERLNELEN 1030
                      5566777777776.567777776666551111555677888999************************************97 PP

  == domain 9  score: 7.0 bits;  conditional E-value: 0.0031
  HIP1_clath_bdg   53 elekLkreleakraelarlkssLesseqsgeqlssql 89  
                       + k++rele++  el++ k+sL+++e+  +q  + l
      CCE27094.1 1049 SIAKMQRELENTVRELDTCKASLAEKERILKQRDALL 1085
                      5789***********************9888877666 PP

  == domain 10  score: -2.1 bits;  conditional E-value: 2.1
  HIP1_clath_bdg   35 elerlkeeaerkleeqkeelekLkreleakraelarlkssLesse 79  
                      +++r +++ ++  + q   + +L++   + r +la+l++s +++ 
      CCE27094.1 1115 TFQRTHQHLTHTANTQDVRIAELESTRGQDRRRLAQLEQSARDQL 1159
                      455555555555555666666666555555555555555544433 PP

  == domain 11  score: 2.4 bits;  conditional E-value: 0.081
  HIP1_clath_bdg   32 leeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeq 84  
                      +e+ ++ l  + ++ +++ ++e ++L+++l  + ++l+rl++ L++s  sg+ 
      CCE27094.1 1217 IETMFQTLFTKIHSVERDLNKEYQTLENNLDVRVKKLDRLETMLRNSVASGTL 1269
                      5666666666666777788899999****************999999999875 PP

  == domain 12  score: -1.8 bits;  conditional E-value: 1.7
  HIP1_clath_bdg   56 kLkreleakraelarlkssLesseqsgeqlssqlaa 91  
                      kLk e e ++++ + +++ L   e+++ +l  ++  
      CCE27094.1 1435 KLKMEREGRNQDRQAARQRLGGLEMENRDLRDRVRR 1470
                      456666666666666666666555555555555544 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.8       1.2   3.5e+03      25      91 ..     397     465 ..     395     468 .. 0.76
   2 ?    2.4   1.3     0.051   1.5e+02      13      76 ..     738     800 ..     731     810 .. 0.73
   3 ?    3.3   2.0     0.026        79      35      98 ..     830     902 ..     809     913 .. 0.51
   4 ?    0.8   0.1      0.15   4.5e+02      32      78 ..     940     999 ..     931    1006 .. 0.57
   5 !   18.0   0.9   7.5e-07    0.0022      35     120 ..     985    1069 ..     960    1087 .. 0.83
   6 ?   -1.8   0.4      0.96   2.9e+03      64      94 ..    1136    1166 ..    1108    1174 .. 0.59
   7 !   10.8   0.2   0.00012      0.37      35      81 ..    1209    1258 ..    1183    1268 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
  Baculo_PEP_C  25 irlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq...dtlrneLtnln 91 
                   ++ q+++i   l++   +++ ++  ls++l +l++e  +++ +   +L+++l+ lq   + lr++ + l+
    CCE27094.1 397 LKEQSSTI-ERLSKENFDLKLKVMFLSDRLDRLSEEGIKEMISENVELKTSLAVLQrdnKVLRKRVKELE 465
                   67777788.7888888888888888999999999887777777777899999999987666777666655 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.051
  Baculo_PEP_C  13 nqfldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdal 76 
                   n+  +L + L++ +lqn ++  +l++ +++ e  ++   +  +++  +++++ldt+++ L +  
    CCE27094.1 738 NKLAELRDKLSSAKLQNQEMQRELESCMEDFEAAVEGKRQ-AEESTLAVQEDLDTAMNDLVALQ 800
                   5567888888888888888888888888888888888444.44445558888888888886654 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.026
  Baculo_PEP_C  35 qlatlldaietqLnalsedlksllaeldt..........rldtlltnLtdalnalqdtlrneLtnlnsiltnLl 98 
                   +l++  d+ +++++  +++l++ l+++d+          +l  l ++ +++l +++ +l++eL++ n++l +L 
    CCE27094.1 830 ALEAEADHRNEEIQRTQAELRDRLENFDAlqgemrkmseALVRLEDEQDSKLRRIK-QLEEELDSSNKELEELE 902
                   45555555555555555555554444443222222111144444444444444443.56666666666666654 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.15
  Baculo_PEP_C  32 ilaqlatlldaietqLnalsedlksllaeldt..............rldtlltnLtdalna 78 
                   i ++l++++++ e++L++ +e++++l + l++              ++++++++L++ + +
    CCE27094.1 940 I-GDLEAAIANAEQNLQEEKERVRELDNRLHQereqreivadkekeEVQQVVDELNREVSS 999
                   4.66677777777777776666666666665555544444444444555555555555544 PP

  == domain 5  score: 18.0 bits;  conditional E-value: 7.5e-07
  Baculo_PEP_C   35 qlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstLnnllqalnnldl 120 
                    ++++ +d++++++++  +++++l ++l++r  + +t+ ++ ln+l+++lr++L  ln   ++Ll s++ ++  L+n +  l+  + 
    CCE27094.1  985 EVQQVVDELNREVSSAHDEVRRLRKSLSSREVE-ATEWKERLNELENNLREALGDLNGTRSSLLKSIAKMQRELENTVRELDTCKA 1069
                    688999999999999999999999999987544.57789*************************************9999987754 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 0.96
  Baculo_PEP_C   64 rldtlltnLtdalnalqdtlrneLtnlnsil 94  
                    +l+++  +  + l++l+++ r +Lt  n  l
    CCE27094.1 1136 ELESTRGQDRRRLAQLEQSARDQLTERNELL 1166
                    3444444445566677777777777665554 PP

  == domain 7  score: 10.8 bits;  conditional E-value: 0.00012
  Baculo_PEP_C   35 qlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq...d 81  
                    +l +++++iet +++l ++++s+  +l+++ +tl +nL+  +++l    +
    CCE27094.1 1209 NLFAAVKTIETMFQTLFTKIHSVERDLNKEYQTLENNLDVRVKKLDrleT 1258
                    34445555555555555555555555555555555555555555543322 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5  22.0       4.6   1.4e+04      13     101 ..     442     530 ..     435     561 .. 0.72
   2 ?   -5.0   8.1         6   1.8e+04      52      91 ..     547     586 ..     524     606 .. 0.60
   3 ?   12.3   0.1   6.4e-05      0.19      64     113 ..     639     688 ..     611     704 .. 0.88
   4 ?   -5.9  31.2         6   1.8e+04      22     131 ..     730     840 ..     723     859 .. 0.66
   5 ?    5.5  19.6    0.0077        23      46     123 ..     860     937 ..     850     944 .. 0.80
   6 ?   -5.0  23.6         6   1.8e+04      45     130 ..     947    1036 ..     927    1039 .. 0.71
   7 ?   -4.0  19.9         6   1.8e+04      11     113 ..     990    1100 ..     988    1132 .. 0.48
   8 ?   -5.6  18.8         6   1.8e+04      11     112 ..    1050    1169 ..    1048    1175 .. 0.72
   9 ?    0.2   0.2      0.34     1e+03      49      75 ..    1232    1258 ..    1208    1298 .. 0.69
  10 ?    0.7   1.1      0.23   6.9e+02      48      90 ..    1432    1474 ..    1401    1476 .] 0.71

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.6
      APG6_N  13 eldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeee.elleeLkelekereeleaelaaleeelealeeeeerf 101
                 el++ l+ ++++ + +++  k+l+k++ke+e+ + +++++ ++ +kl++ee+ e ++e   l +  ee ++++++l+ e+  +e e++r 
  CCE27094.1 442 ELKTSLAVLQRDNKVLRKRVKELEKQAKEDEQ-RPSTADSADQTAKLSDEEAyEREQEVLFLRERVEEYASDIEKLRTESLSRESEKRRL 530
                 68899999******************999995.666666666666666665535566677777777777777777777776666666654 PP

  == domain 2  score: -5.0 bits;  conditional E-value: 6
      APG6_N  52 leeeleklekeeeelleeLkelekereeleaelaaleeel 91 
                  +ee+e  ++  e+  +  +++++e+++l++e  +l++el
  CCE27094.1 547 QQEEFEVWKDLLEQETARREQADEENRRLRDETFKLKREL 586
                 4555666666666666666666666666666666666655 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 6.4e-05
      APG6_N  64 eelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlell 113
                 ++l  e ++l +e++el++e+ a+++ l  +++e+er  +e  +l++ + 
  CCE27094.1 639 DQLRHESEQLRHENAELRREVGAQTSMLTSRNREKERLYQEIEDLKMAQR 688
                 6788999**********************************999998875 PP

  == domain 4  score: -5.9 bits;  conditional E-value: 6
      APG6_N  22 ekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqle....llele 116
                 + er+++e+ l++l+++ ++++    + +e ++ele   ++ e+++e  +++e+   +++++l ++ + l al++e ++ +re+ + + +      e +
  CCE27094.1 730 DTEREELENKLAELRDKLSSAK---LQNQEMQRELESCMEDFEAAVEGKRQAEESTLAVQEDLDTAMNDLVALQAERDEAIREQGDMESQfealRREAQ 825
                 5677777778888887766655...35667777777777777777777777777777777777777777777777777777776543333111145667 PP

      APG6_N 117 eeldsleaqyehaqn 131
                 +e d+lea+ +h ++
  CCE27094.1 826 DEIDALEAEADHRNE 840
                 777777777776654 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.0077
      APG6_N  46 deeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsle 123
                 + e+++  e l +le+e++++l+ +k+le+e ++ ++el++le++l + +e+++rf  ++ + q e + l ee++s +
  CCE27094.1 860 QGEMRKMSEALVRLEDEQDSKLRRIKQLEEELDSSNKELEELEQKLLDANEKNQRFSIQQESSQGEIAFLREEQESDK 937
                 346778888899999999999999999999999999999999999999999999999888888888888888887755 PP

  == domain 6  score: -5.0 bits;  conditional E-value: 6
      APG6_N   45 qdeeleeleeeleklekeeeelleeLke....lekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqyehaq 130 
                    + +++l+ee e++++  ++l +e ++    ++ke+ee+++ + +l +e +  ++e +r  ++ ++ ++e +e +e+l+ le++++ a+
  CCE27094.1  947 IANAEQNLQEEKERVRELDNRLHQEREQreivADKEKEEVQQVVDELNREVSSAHDEVRRLRKSLSSREVEATEWKERLNELENNLREAL 1036
                  344556777777777777777777777633334589999999999999999999999999999999999999999999999999888765 PP

  == domain 7  score: -4.0 bits;  conditional E-value: 6
      APG6_N   11 leeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleee....lek.......lekeeeelleeLkelekereeleaelaaleeelealee 96  
                  ++el++++++a +e + +++ l+  + e++e    +e l+ele+     l +       l k  +++++eL+++ +e +  +a la+ e+ l+++++
  CCE27094.1  990 VDELNREVSSAHDEVRRLRKSLSSREVEATEW---KERLNELENNlreaLGDlngtrssLLKSIAKMQRELENTVRELDTCKASLAEKERILKQRDA 1083
                  68888888888888888888888888775553...34444444442222333111111144444444444444444444444444444444444444 PP

      APG6_N   97 eeerfwreynelqlell 113 
                    e +  e ++    l+
  CCE27094.1 1084 LLESHGLETRKVTELLE 1100
                  44444333333332222 PP

  == domain 8  score: -5.6 bits;  conditional E-value: 6
      APG6_N   11 leeldkqleqaekerdaYeeflkklkkekkeeek..................qdeeleeleeeleklekeeeelleeLkelekereeleaelaalee 89  
                  + +++++le++ +e d+ ++ l++ ++  k+ ++                  ++  +++++ ++e+ +++ + l    +  +   +ele+ + + ++
  CCE27094.1 1050 IAKMQRELENTVRELDTCKASLAEKERILKQRDAlleshgletrkvtellekERLAHRNTKAQYETFQRTHQHLTHTANTQDVRIAELESTRGQDRR 1146
                  5689999999999999999999998877666555888888886666655544444444444447777777777777777777777788888888888 PP

      APG6_N   90 elealeeeeerfwreynelqlel 112 
                   l++le+  +  ++e+nel l+l
  CCE27094.1 1147 RLAQLEQSARDQLTERNELLLKL 1169
                  88888888888888888877765 PP

  == domain 9  score: 0.2 bits;  conditional E-value: 0.34
      APG6_N   49 leeleeeleklekeeeelleeLkelek 75  
                  +++l++e+++le+  +  +++L++le+
  CCE27094.1 1232 ERDLNKEYQTLENNLDVRVKKLDRLET 1258
                  455666666666666666666666664 PP

  == domain 10  score: 0.7 bits;  conditional E-value: 0.23
      APG6_N   48 eleeleeeleklekeeeelleeLkelekereeleaelaaleee 90  
                   + +l+ e e  +++++++ + L  le e+++l++ ++    e
  CCE27094.1 1432 MEYKLKMEREGRNQDRQAARQRLGGLEMENRDLRDRVRRTNTE 1474
                  4456666777777888888888888888888888877776665 PP

>> GUN4_N  ARM-like repeat domain, GUN4-N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.056   1.7e+02       4      30 ..     507     534 ..     505     546 .. 0.80
   2 ?   -3.8   0.7       4.5   1.3e+04       6      25 ..     736     755 ..     732     758 .. 0.73
   3 ?    9.0   1.0   0.00045       1.4       4      37 ..     892     925 ..     889     931 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.056
                 ---CHHCHHHH.HHCHHS-CCCHHHHHH CS
      GUN4_N   4 seqsedlseLr.qqLesgsekkqlqaia 30 
                 +e + d+++Lr + L+ +sek +l+ i 
  CCE27094.1 507 EEYASDIEKLRtESLSRESEKRRLAEIV 534
                 56688*****8346*********98775 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.5
                 -CHHCHHHHHHCHHS-CCCH CS
      GUN4_N   6 qsedlseLrqqLesgsekkq 25 
                   + l+eLr +L+s+  ++q
  CCE27094.1 736 LENKLAELRDKLSSAKLQNQ 755
                 56778999999988766665 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00045
                 ---CHHCHHHHHHCHHS-CCCHHHHHHHHCTSHH CS
      GUN4_N   4 seqsedlseLrqqLesgsekkqlqaiaqLakaGe 37 
                 ++ +++l+eL+q+L +++ek+q+  i q +++Ge
  CCE27094.1 892 DSSNKELEELEQKLLDANEKNQRFSIQQESSQGE 925
                 567889**********************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2652  (0.147917); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                       179  (0.00998383); expected 17.9 (0.001)
Passed Fwd filter:                       100  (0.00557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 2.89u 0.41s 00:00:03.30 Elapsed: 00:00:00.66
# Mc/sec: 6700.36
//
Query:       CCE27095.1  [L=96]
Description: uncharacterized protein CPUR_00567 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 731.56
//
Query:       CCE27096.1  [L=189]
Description: uncharacterized protein CPUR_00568 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00039   20.5  14.5     0.0029   17.6  14.5    2.1  1  MARVEL    Membrane-associating domain
  ------ inclusion threshold ------
       0.04   13.9   0.4          4    7.5   0.0    3.0  3  HTH_36    Helix-turn-helix domain
        2.3    8.4   5.6        2.5    8.3   0.0    2.6  3  CCSMST1   CCSMST1 family


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6  14.5   4.9e-07    0.0029      14     142 ..      40     181 ..       2     183 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.9e-07
      MARVEL  14 lvfaiiilgliasliakldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrdisca..... 107
                 l+ ++ ++g  a++++ + ql    +    ++++v+++++l++ +++ l       + ++l p i++i  ++++++wlv+ +++ ++l + + +     
  CCE27096.1  40 LLSSATVVGVFANFVQIQLQLGLPIPWYFIYYITVGCIALLFIGGIFWL------IAKRRLLPAIVMIGAFILFVMWLVGLVVVSVQLWGPDGSiettc 132
                 4444555555555554333344444556788899999998886666666......789******************************99888899999 PP

      MARVEL 108 ............fe.....snqysasltvrcgqaqaavafgflavllfaasa 142
                             ++           ++ + c ++  a+ ++ +a+l+++ ++
  CCE27096.1 133 nlhvfngdphgqNQetmawL---QQRSICQCWHLVFAMSLTGVAFLVWVMIM 181
                 99999888887622443322...23346788899999999999999999877 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.044   2.6e+02      10      37 ..      36      62 ..      29      63 .. 0.79
   2 ?    0.5   0.0       0.1   6.1e+02      19      33 ..     145     159 ..     142     159 .. 0.82
   3 ?    7.5   0.0   0.00066         4       3      18 ..     169     184 ..     168     187 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.044
      HTH_36 10 llgslasfanknggcfpsqetlakrlgl 37
                +l++l+s a    g+f+ +  ++ +lgl
  CCE27096.1 36 ILIMLLSSA-TVVGVFANFVQIQLQLGL 62
                567777777.77779*999999999986 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.1
      HTH_36  19 nknggcfpsqetlak 33 
                 n+++ ++ +q+ +++
  CCE27096.1 145 NQETMAWLQQRSICQ 159
                 56777********96 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00066
      HTH_36   3 Lspsaklllgslasfa 18 
                 L+ +a+l++++++++ 
  CCE27096.1 169 LTGVAFLVWVMIMAYQ 184
                 899**********995 PP

>> CCSMST1  CCSMST1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.028   1.7e+02      28      44 ..      64      80 ..      51      86 .. 0.86
   2 ?   -2.7   0.3       1.1   6.7e+03      35      48 ..      96     109 ..      91     112 .. 0.57
   3 ?    8.3   0.0   0.00043       2.5      26      49 ..     147     180 ..     138     182 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.028
     CCSMST1 28 rpwykvlvislslaafl 44
                +pwy ++ i++  +a+l
  CCE27096.1 64 IPWYFIYYITVGCIALL 80
                7*********9988887 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.1
     CCSMST1  35 vislslaaflvYFc 48 
                 ++++ + af+++ +
  CCE27096.1  96 PAIVMIGAFILFVM 109
                 55555566665544 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00043
     CCSMST1  26 eerpwyk..........vlvislslaaflvYFci 49 
                 e++ w +          v+ +sl+ +aflv+ +i
  CCE27096.1 147 ETMAWLQqrsicqcwhlVFAMSLTGVAFLVWVMI 180
                 46666666666667744777777779*****887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1066  (0.0594567); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 1263.93
//
Query:       CCE27097.1  [L=325]
Description: probable arginase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-74  251.5   0.1    1.2e-74  251.3   0.1    1.0  1  Arginase  Arginase family


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.3   0.1   6.7e-79   1.2e-74       2     279 ..      16     320 ..      15     321 .. 0.89

  Alignments for each domain:
  == domain 1  score: 251.3 bits;  conditional E-value: 6.7e-79
                 EEEEEEEE--TTTSSSGGGGGHHHHHHHHHHTSB.T.HCHEETTTTESCCSEEEEEEEEE--..............SSCHHHH....HHHHHHHHHHHH CS
    Arginase   2 dvallGvPfdaagsgrpGarfGPraireasarle.e.aleynlelgvleelkivdlgdvavt..............pvdneev....leqieeavaeil 80 
                 d++++ v f+  g+ ++G++ GP+a+ +     e + +l+y+l             gd++v+               ++n++v    +++i+++v+e++
  CCE27097.1  16 DLGVVAVGFSK-GQPKAGVDAGPEALIASGLLTEiQeELGYKL------------HGDAQVQkydelmpasdpdyrGMKNPRVvsavNRRISQQVYEHA 101
                 78899******.***************9955444433444444............33333333333344466777744666644777************ PP

                 HTTCEEEEEESSGGGHHHHHHHHHHHH....STTEEEEEESSS----SSCTTTBSSSTTSHHHH...............HHHHTSECGCEEEEEEE-ST CS
    Arginase  81 kagklpivlGGDHsialgilralaeky....gkplgvihfDAHaDlrtpetegsgnshGtpfrr...............aaeegllkpkklvqiGirsv 160
                 ++g+l+++lGGDHs+a+g++ + a+++    ++++++i++DAHaD++tpe ++sgn hG+p+++               + e+ ll+ kklv+iG+r+v
  CCE27097.1 102 REGRLVLTLGGDHSVAIGTVTGSAKAVrerlNREIALIWVDAHADINTPEVSSSGNIHGMPVAFasglaksdeeeffgwITEDMLLNVKKLVYIGLRDV 200
                 **********************999999999999********************************************8888899999*********** PP

                 CSHHHHHHHHTTSEEEEHHHHHHHHHHHHHHHHHHHHTCTTSEEEEEEEGGGBBTTTSTSSSS-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGG CS
    Arginase 161 dneeyelakelgirvitmreidelglkavveeilervgaeedpvylSfDiDvlDpavaPGtGtpepgGltlrellallrelaeklnlvgaDvvEvnPal 259
                 d  e+++++e +i++++m ++d++g+ +vve++l+++g  ++p++lSfD+D+lDp +aP+tGtp++gGltlre  ++++++++++ lv++D+vEvnP+l
  CCE27097.1 201 DTAEKRILRENNIKAFSMFDVDRYGIGRVVEMALAYIG-ADTPIHLSFDVDALDPMWAPSTGTPVRGGLTLREGDYICEAVHQTGSLVAIDLVEVNPSL 298
                 *************************************8.669********************************************************* PP

                 SSTT...THHHHHHHHHHHHHHH CS
    Arginase 260 dtea...eqtarlaarlvrelll 279
                  +++   ++t+r+++++vr++ l
  CCE27097.1 299 ASTEagaQETVRAGCSIVRCA-L 320
                 *988999***********995.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2352.12
//
Query:       CCE27098.1  [L=422]
Description: uncharacterized protein CPUR_00570 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3173.33
//
Query:       CCE27099.1  [L=693]
Description: related to general RNA polymerase II transcription factor TAF12 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.6e-19   67.7   0.1    1.6e-18   66.9   0.1    1.4  1  TFIID_20kDa  Transcription initiation factor TFIID subunit A


Domain annotation for each model (and alignments):
>> TFIID_20kDa  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.1     9e-23   1.6e-18       1      68 []     578     652 ..     578     652 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 9e-23
                  -HHHHHHHHHCC.......-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHHHS-- CS
  TFIID_20kDa   1 sKrklqdLvqqv.......dsetkldedvedlLleiaddFvesvtkfacklakhRksdklevrDiqlhlernynm 68 
                  sK+kl++Lv+qv          ++l +dve+ +l +ad Fv++v +++c+ ak R s++le rDiql ler yn+
   CCE27099.1 578 SKKKLDELVRQVcggtgdsQDGNVLTPDVEESVLSMADSFVDNVLHASCRNAKERGSKVLEIRDIQLVLERTYNI 652
                  7****************5533479**************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1588  (0.0885716); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.04u 0.36s 00:00:01.40 Elapsed: 00:00:00.51
# Mc/sec: 4084.88
//
Query:       CCE27100.1  [L=580]
Description: probable 26S proteasome regulatory subunit p58 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-25   87.3   0.2      2e-24   85.8   0.2    1.8  1  Rpn3_C    Proteasome regulatory subunit C-terminal
    7.8e-20   71.3   0.3    3.3e-19   69.3   0.0    2.2  3  PCI       PCI domain
     0.0059   16.6   0.1      0.025   14.7   0.1    2.2  1  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Rpn3_C  Proteasome regulatory subunit C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.2   3.3e-28     2e-24       1      66 [.     506     569 ..     506     570 .. 0.99

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 3.3e-28
      Rpn3_C   1 DvYsTkePqeaFdeRIkFclqlHneavkAMRYpedakkkelesaeearerqqeeelakelededld 66 
                 DvY+T eP eaF++RI+ cl lH+e+vkAMR+p+++++ el++a+ear+r  e+e ak+++d+d+d
  CCE27100.1 506 DVYATGEPGEAFHDRIRACLALHDESVKAMRFPMNQHRLELKNAQEARDR--EREWAKDIQDGDID 569
                 9*************************************************..************99 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5   8.7e+03      43      65 ..     105     127 ..      79     132 .. 0.71
   2 ?   -1.7   0.0      0.68   4.1e+03      34      74 ..     222     261 ..     210     308 .. 0.67
   3 !   69.3   0.0   5.6e-23   3.3e-19       3     104 ..     401     502 ..     399     503 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHCESEEEHHH CS
         PCI  43 ekkvrerllrqvskiyssisler 65 
                   +  +r+lr++s++ ++i+ + 
  CCE27100.1 105 DARFSLRALRSISLFRKRITPDI 127
                 55666889999999999998665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.68
                 THHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSH CS
         PCI  34 glaqllesLekkvrerllrqvskiyssislerlaklldlsv 74 
                 +l+  ++ L +++   l  +v+++y s+ +e++++l + s+
  CCE27100.1 222 NLSARVQALNRRTLDSLSAKVYFYY-SLFCEHVSTLPPSSE 261
                 5666666677777776666777644.455555555555554 PP

  == domain 3  score: 69.3 bits;  conditional E-value: 5.6e-23
                 HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSH.HHHHHHHHHHHHTTSSSEEEETTTTE CS
         PCI   3 ysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsv.devEkilvklIrdgeirakidqesgi 100
                 y  l++a+r gnl++f+++ +++  + +++dg++ l+ +L+++v+++ +r++s++ys+isl ++   l+l + + +E+i++k+Irdg i+a++d+e g 
  CCE27100.1 401 YFLLVQAVRVGNLEDFETTIAKH-GDTFRRDGTYSLILRLRQNVIKTGIRMMSLSYSRISLRDICIRLHLGSeESAEYIVAKAIRDGVIEATLDRERGF 498
                 6779*******************.**********************************************99899*********************998 PP

                 EEEC CS
         PCI 101 vvfk 104
                 +  k
  CCE27100.1 499 MMSK 502
                 8765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   4.1e-06     0.025       1      33 [.     326     358 ..     326     359 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.1e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a+ ly+lG++ + + +y eA+e++ +A + +P 
  CCE27100.1 326 ARFLYYLGRIRAIQLRYTEAHEHLTAATRKAPS 358
                 678*************************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4138.44
//
Query:       CCE27101.1  [L=535]
Description: uncharacterized protein CPUR_00573 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-08   32.2   9.8    1.4e-07   31.5   9.8    1.3  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   9.8   7.8e-12   1.4e-07       2      34 ..      36      68 ..      35      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 7.8e-12
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfys 34
                +C +Cr++KvKCd+++PaC +Ck+    C  y+
  CCE27101.1 36 GCLTCRQRKVKCDQRRPACDRCKRGMHRCLGYD 68
                7**********************9888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3888.50
//
Query:       CCE27102.1  [L=720]
Description: related to histone acetyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-54  183.1   0.0    5.5e-54  182.5   0.0    1.2  1  MOZ_SAS         MOZ/SAS family
    9.9e-10   37.9   0.1    0.00085   18.9   0.1    2.4  2  zf-MYST         MYST family zinc finger domain
  ------ inclusion threshold ------
      0.077   13.4   0.0       0.46   10.9   0.0    2.1  2  Acetyltransf_7  Acetyltransferase (GNAT) domain
       0.16   12.2   0.0       0.35   11.1   0.0    1.4  1  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> MOZ_SAS  MOZ/SAS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.5   0.0   1.2e-57   5.5e-54       9     174 ..     398     592 ..     386     596 .. 0.93

  Alignments for each domain:
  == domain 1  score: 182.5 bits;  conditional E-value: 1.2e-57
     MOZ_SAS   9 keklsvfevdGekeklycqnLcllaklFldhktlyydvepFlfYvltea.............deegahivGyFskekesaeeynlaCilvlPpyqrkgy 94 
                 + + s++evdGek+ l+cqnL+l+aklFld+k++++dv+ F +++l+ +              ++  ++ G+Fskek+s++++nlaCilv+Pp+qrkg+
  CCE27102.1 398 EGEWSIWEVDGEKNGLFCQNLSLFAKLFLDNKSVFFDVSGFNYFLLVYTppatapvpgtdpmPKQAPQVTGFFSKEKMSWDNNNLACILVFPPWQRKGL 496
                 4689*******************************************998999999988887777788******************************* PP

     MOZ_SAS  95 GklliefsYeLskrekkigtPekPlsdlgllsyrsywkeeilellkek................ekkkisieeisektgikeeDiistleelkllk 174
                 G ll+  sYe+s+re+ +g+PekP+sdlg++ y+++w+ ei + l                   ++  + +++ s++t+i+ eD +s+l+++ +++
  CCE27102.1 497 GALLMGASYEISRREGILGGPEKPISDLGKKGYKRFWSGEISRWLLGIenaathqqsqsavgptQELIVDVNDCSQSTWIAVEDCLSVLRDMGIVE 592
                 *******************************************998777899**********98778899**********************9987 PP

>> zf-MYST  MYST family zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   9.7e-07    0.0044       2      26 ..     260     284 ..     259     291 .. 0.92
   2 !   18.9   0.1   1.9e-07   0.00085      30      55 .]     321     346 ..     314     346 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.7e-07
     zf-MYST   2 kniekieiGeyeiktWYfSpYPeel 26 
                 +ni+k+ +G++ ++tWY S Y +e+
  CCE27102.1 260 RNIDKVVLGNLCFRTWYPSYYGKEV 284
                 8********************9886 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.9e-07
     zf-MYST  30 ekLyvCefClkYmksakelerHkkkC 55 
                 e+LyvC  C+kY k+  + + H + C
  CCE27102.1 321 ERLYVCPGCFKYAKELLAWRGHVRIC 346
                 79**********************99 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.46     2e+03      18      43 ..     343     370 ..     320     371 .. 0.63
   2 ?   10.9   0.0    0.0001      0.46      26      49 ..     481     506 ..     463     532 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.46
                     EEEEEES..TCTEE..EEE-GGGTTSSHHH CS
  Acetyltransf_7  18 ialslld..aeitr..laVdpeyrgkGiGr 43 
                     +++++++      +  ++++p  r+k +++
      CCE27102.1 343 VRICERSrsIP--GkkIYTHPRGRRKVLAT 370
                     44444432223..24599999999987766 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0001
                     CTEEEEE-GGGTTSSHHHHHHHH..T CS
  Acetyltransf_7  26 eitrlaVdpeyrgkGiGraLlea..a 49 
                     ++ ++ V p +++kG+G  L+ a  +
      CCE27102.1 481 NLACILVFPPWQRKGLGALLMGAsyE 506
                     455599***************86332 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.7e-05      0.35      64      94 ..     483     513 ..     460     515 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.7e-05
                     EEEEESGGGTTSSHHHHHHHHHHHHHHHTTE CS
  Acetyltransf_1  64 eslaVspeyrgkGlGsaLlealeerareegi 94 
                       + V p +++kGlG +L+ a  e+ r+egi
      CCE27102.1 483 ACILVFPPWQRKGLGALLMGASYEISRREGI 513
                     468999*********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4837.93
//
Query:       CCE27103.1  [L=154]
Description: probable H+-transporting two-sector ATPase lipid-binding protein precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-11   43.0  14.6    4.3e-11   43.0  12.3    2.1  2  ATP-synt_C  ATP synthase subunit C
  ------ inclusion threshold ------
      0.073   13.4   1.7      0.094   13.0   1.7    1.1  1  HutP        HutP
        0.3   10.6   1.9       0.39   10.3   1.9    1.1  1  OMPdecase   Orotidine 5'-phosphate decarboxylase / HUMPS fami


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.41   2.4e+03      23      34 ..      53      69 ..      51      83 .. 0.56
   2 !   43.0  12.3   7.2e-15   4.3e-11       1      59 [.      86     147 ..      86     148 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.41
                HHHHHHHHHSG.....H CS
  ATP-synt_C 23 sagiravarnp.....k 34
                s+ + a++rn+     +
  CCE27103.1 53 SSVLKATSRNAfqvqrR 69
                67778888888655432 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 7.2e-15
                 HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSG....HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   1 lgaglavGlsalgsGigiGkagsagiravarnp....klftksliilafaeaialygLivali 59 
                 lg g av ++  g+GigiG +++a +++varnp    +lf+ +++++af+eai+l+ L+val+
  CCE27103.1  86 LGMGSAV-IGLTGAGIGIGLVFAALLNGVARNPalrgQLFSYAILGFAFVEAIGLFDLMVALM 147
                 6899999.*****************************************************98 PP

>> HutP  HutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   1.6e-05     0.094       3      97 ..      10     104 ..       8     125 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
                 HHHHHHHH-SSSCH.HHHH.HHHHTTEEEEEEEEEESS...HHHHHHHHHHHHHHTTSS-SSSHHHHHHHHHHHHHHHHHHTTSHHSG...EEEEEEE CS
        HutP   3 raAillalsesreeeeelkeklkkegikvaavevggeaeelskkivesavvaAkregvikeehreehavahAvleAlsqvtrkavgln...vglkigi 97 
                 r+A ++a  + r     +++++++ g ++++++ ++  ++l+++  +s++ a  r+    ++   +  +a+A++eA +++ ++ + ++   +g+ ig+
  CCE27103.1  10 RLATQMATKAAR---PAIRANVAAAGKRTMMTNSASPLQTLKRQQASSVLKATSRNAFQVQRRAYSNEIAQAMVEASKNLGMGSAVIGltgAGIGIGL 104
                 678888877555...569999************************************99999999**************9877776666365665555 PP

>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.9   6.6e-05      0.39      76     155 ..      12      95 ..       7      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.6e-05
                 HHSTCHHHHTTESEEEEEGTGHHHHHHHHHHHHHHTTS.EEEEEESTSSGGHHHHHH.H...SHHHHHHHHHHHHHHHTTESEE CS
   OMPdecase  76 atagsarikewadivtvhavaGkasvkalaeaaekwgnrgllilaqmsskgnlmlqe.k...gytqacveaarehkaedfvmGf 155
                 at+++ +++  a   +v a+    +++  a  ++  ++++   + + +s +++++q+ +   +++qa+vea ++    + v+G+
  CCE27103.1  12 ATQMATKAARPAIRANVAAAGKRTMMTNSASPLQTLKRQQASSVLKATSRNAFQVQRrAysnEIAQAMVEASKNLGMGSAVIGL 95 
                 666677899999999**********************99******************834689999999999988866777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1032  (0.0575604); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1180.96
//
Query:       CCE27104.1  [L=830]
Description: related to nucleolar 100K polymyositis-scleroderma protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-42  144.3   0.4    4.6e-42  143.7   0.4    1.3  1  DNA_pol_A_exo1  3'-5' exonuclease
    4.1e-27   94.7   0.5    1.5e-26   92.9   0.5    2.1  1  PMC2NT          PMC2NT (NUC016) domain
    2.5e-11   43.4   0.0      6e-11   42.2   0.0    1.7  1  HRDC            HRDC domain
  ------ inclusion threshold ------
      0.042   13.9   0.5       0.14   12.1   0.5    1.9  1  DNA_photolyase  DNA photolyase
      0.061   12.7  26.5       0.12   11.7  26.5    1.5  1  Nop53           Nop53 (60S ribosomal biogenesis)
        8.3    6.5  10.3         26    4.9  10.3    1.8  1  DUF4337         Domain of unknown function (DUF4337)


Domain annotation for each model (and alignments):
>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   0.4   1.5e-45   4.6e-42       3     175 ..     225     391 ..     223     392 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.7 bits;  conditional E-value: 1.5e-45
                     EEHSHHHHHHHHHHHTTSSEEEEEEEEE-SSSTTSSEEEEEEEEECSSEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHHHHT CS
  DNA_pol_A_exo1   3 ivtdeeeleelieelknlkvvavDtEttsldlisatlvliliqlgekeeayiidplelgddvalealkrlledenitkvghnakfDlevlardfg 97 
                     +v++ e+++++++elk++k++avD E+++ ++  +t+ ++l+q++++++++i+d+l+      l++l+++++d+ i+kv+h+a +D+ +l+rd g
      CCE27104.1 225 WVDTLEGVKAMLQELKKAKEIAVDLEHHDFRT--YTGLVCLMQVSTRDKDWIVDTLQPWRH-ELQILNEVFADPHIIKVFHGAYMDMVWLQRDLG 316
                     89******************************..*********************998775.8******************************** PP

                     S--SSEEEHHHHHHHTTHSTTSSHHHHHHHHHSB---GHCCTTSSTTTSSS-HHHHHHHHHHHHHTHHHHHHHHHHHH CS
  DNA_pol_A_exo1  98 ielenlfdtmlaayvldyershsLdsLaekylgdleldkeeqiakwqkarplleeqllYAaeDadvllrlfkkLtkel 175
                      ++ +lfdt++a  +l+y+   sL+ L+ k+++ ++ dk++q a+w+  rp +ee+l YA+ D+++ll+++++ ++el
      CCE27104.1 317 LYINGLFDTYFACDILNYPG-KSLAFLLSKFVD-FDADKQYQLADWR-IRPIPEEMLYYARSDTHYLLYIYDRVRNEL 391
                     ********************.9***********.*************.************************999987 PP

>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.5   5.1e-30   1.5e-26       1      92 []      19     109 ..      19     109 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 5.1e-30
      PMC2NT   1 veatraanaLpaeDldfyrsldpefaksldeqserllslinsllklaaskseisassklededdveekfksvvdvvDsllEkadtcLDeltg 92 
                 v+a++++n+++aeDl+f+r+++p++a+++de+++r+l+l  +ll +aa+ + ++a+ +led++d++ +++++vdvvDs+lEkadt+LDe+tg
  CCE27104.1  19 VSAVKNVNRIAAEDLSFQRTVNPDVAEHIDEKAARVLDLSAQLLGSAAKACGVKAP-TLEDAEDIDMSWQAIVDVVDSVLEKADTALDEYTG 109
                 789**************************************************995.*********************************98 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0     2e-14     6e-11       1      58 [.     452     509 ..     452     517 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 2e-14
                 HHHHHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---SHHHHHTSTTT-HHHHH CS
        HRDC   1 qlallkaLrewReelAreedvppyvvfpdktLleiAeklPttleeLlqiegvgkrkle 58 
                 q+a+++aL+ wR+++Ar+ed++p++v++ +   eiA+ +P+++++L ++  ++   ++
  CCE27104.1 452 QFAVFRALWRWRDDTARKEDESPNFVLGASNVFEIARVNPPDAKALHSLLPLTAPLAR 509
                 689*******************************************998766666555 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   4.8e-05      0.14     101     154 ..     756     809 ..     750     821 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.8e-05
                     HHHHHHHHHHHHHHHCTSEEEEE--SSSS-HHHHHTTTSSSHSSHHHHHHCHHH CS
  DNA_photolyase 101 dererdeavkealrkagievesfddhtlvepgevktkkgkpykvFtpfrkrwlk 154
                     +++++ ++v ++ + + +++    + t++++g+ kt+  +p kvF p+ k++ +
      CCE27104.1 756 KQKQMTQEVDNQKKYQAVPFDYSTAATVMHAGKNKTQAREPKKVFDPYSKTADD 809
                     6789999*******9*******************99999***********9876 PP

>> Nop53  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  26.5   4.1e-05      0.12     214     344 ..     648     768 ..     630     800 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.1e-05
       Nop53 214 eeeklerkrekiaekaataeareeelseekdegleeeeeeeeeeeeeeeeeeeesee.eeklnapvkkkpkrKTkaqRnkekrrkeeekeekeekkekk 311
                 ee  l+r r++   k +++ ++++++s+ +d+++ +e++e++++ ++++ +     + +++  +  +++ ++K k+qR+ e+r+++ee++e+ee +   
  CCE27104.1 648 EEFTLRRGRKR---KSESDPDEDATSSSGDDDDD-DEDDEQQQDVPAQSSDIPA--AaDTNGVIAIEERVEKKSKKQRKLERRQRREEAQEEEEDERGL 740
                 45555555554...34455556666666666333.3333333333333333332..1444455556666799999999988888888888877765544 PP

       Nop53 312 keaqlerlkeikkevaekekeraeaaearkkek 344
                 ++ +  ++k  +k+ ++k+ +++       ++k
  CCE27104.1 741 ERYKKRQAKMTRKAKKQKQMTQEVD-----NQK 768
                 4444444444444444444443333.....222 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  10.3    0.0088        26      63     123 ..     716     781 ..     703     784 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0088
     DUF4337  63 llkak.aeelaaavdkkiakykkkiarykkekkeikkkAkeleaerdeaneasdk....fdlasal 123
                 ++++k ++ ++++ +++ ++ ++  +rykk+++++ +kAk+ ++  +e + ++++    fd+++a+
  CCE27104.1 716 KKQRKlERRQRREEAQEEEEDERGLERYKKRQAKMTRKAKKQKQMTQEVDNQKKYqavpFDYSTAA 781
                 223335666666777788899999************************999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2422  (0.135088); expected 358.6 (0.02)
Passed bias filter:                      836  (0.0466284); expected 358.6 (0.02)
Passed Vit filter:                       157  (0.00875676); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.48
# Mc/sec: 5209.87
//
Query:       CCE27105.1  [L=519]
Description: probable TPS1-alpha,alpha-trehalose-phosphate synthase, 56 KD subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.6e-198  657.8   0.0   9.9e-198  657.6   0.0    1.0  1  Glyco_transf_20  Glycosyltransferase family 20
     0.0077   15.9   0.1      0.056   13.1   0.1    2.1  2  Glyco_transf_5   Starch synthase catalytic domain


Domain annotation for each model (and alignments):
>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  657.6   0.0  1.1e-201  9.9e-198       2     473 ..      18     480 ..      17     481 .. 0.99

  Alignments for each domain:
  == domain 1  score: 657.6 bits;  conditional E-value: 1.1e-201
                      -EEEEEEE-SECEEE-S.SCG..EEECCGSSHHHHHCCCHHCCC-EEEEEEECCES-CCC..HCCCCHHHCCCCCEEEEEE-HHHHHHHCCCHH CS
  Glyco_transf_20   2 klvvvsnrlplklereseeekeeyelkkssgglvsalkglkeetevvwvgwlgvevdeseeakekvskeleekfsvvpvflsdekveeyyngfs 95 
                      +l+ +snrlp++++r++ +++  y++++ssgglv+ l+gl+++t+++w+gw+g+ev+ +e   + ++++l++++ ++pvf++de ++++yngf+
       CCE27105.1  18 RLLLLSNRLPITIKRSD-DGS--YTFSMSSGGLVTGLSGLSKTTSFQWYGWPGLEVPVNE--VDGMKQRLKDEYGAHPVFIDDELADRHYNGFA 106
                      67899***********8.888..*************************************..9******************************* PP

                      HHCHHHHHTT-GG....G----HHHHHHHHHHHHHHHHHHHCC--TT-EEEEESGGGTTHHHHHHHCCTT....SEEEEEE-S----HHHHTTS CS
  Glyco_transf_20  96 ksvLWpllHYklpdsseekefersawdaYvkvnklFAdkiveeikdgdliwvhDYhLmllPellRkkled....akigfflHiPFPsseifriL 185
                      +s+LWpl+HY++     e +f++saw+aY++vn+lFA++++++++dgdliwvhDYhLmllP++lR+++ +    +kigfflH+PFPssei+riL
       CCE27105.1 107 NSILWPLFHYHPG----EITFDESAWAAYQEVNHLFAQTVIKDVQDGDLIWVHDYHLMLLPQMLREEIAKtkkkVKIGFFLHTPFPSSEIYRIL 196
                      *************....**************************************************9998899******************** PP

                      TTHHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSSEEEECTTEEEEETTEEEEEEE------HHHHHHHCCSCHHHHHHHHHHHHT.TTSEEE CS
  Glyco_transf_20 186 pvreeilegllgadliGFhtedyarhFlsccsrllgleveskrggveykgrkvsvkalpigidverlesalkkesvsekvkelkerfenkkkli 279
                      pvre++l+gll++dliGFht+dyarhFls+csr+lg +++++  gv+ +gr v+++a+pigid++++ + lkk+sv+ +++ lk +fe+ +kli
       CCE27105.1 197 PVREALLRGLLDCDLIGFHTYDYARHFLSSCSRILGTHTTPN--GVDWNGRFVTIGAFPIGIDPDKFVDELKKPSVQDRIATLKRKFEG-VKLI 287
                      ******************************************..8******************************************99.8*** PP

                      EEEEEC-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEEEEB-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEEES---HHHHHHHHHH- CS
  Glyco_transf_20 280 lgvDrlDyikGvkqkllaferfLeeypelrgkvvlvqiavpsredveeyqelekeveelvgrINgefgtldytPvvylersldfeeliallaaa 373
                      +gvDrlDyikGv+qkl+a+e fL+e+pe++gk+vlvq+avpsr+dveeyq+l++ v+elvgrINg+fgt++++P+++l++s++feel+al+a++
       CCE27105.1 288 VGVDRLDYIKGVPQKLHALEVFLTEHPEWIGKIVLVQVAVPSRQDVEEYQNLRAVVNELVGRINGKFGTIEFMPIHFLHQSVPFEELTALYAVS 381
                      ********************************************************************************************** PP

                      SEEEE--SSBSS-CHHHHHHHCSTTT--EEEEETTBGGGGT-TTTSEEE-TT-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHT-HHHHHHH CS
  Glyco_transf_20 374 dvllvtslRdGmnlvakeyvvcqqekkgvLiLSeFaGaaqsLkdaailvNPwdieevaeaikeaLkmseeerkkrekkllkqvskhdvqsWaes 467
                      dv+lv+s+RdGmnlv++ey+++q+e++gv+iLSeF+GaaqsL+ ++++vNPw++ee+a+a+++a++ms+e+r+ + kkl ++v k++++ W +s
       CCE27105.1 382 DVCLVSSTRDGMNLVSYEYIATQRERHGVMILSEFTGAAQSLN-GSLIVNPWNTEELANALHDAVTMSPEQRAINYKKLERYVFKYTSSWWGTS 474
                      *******************************************.78************************************************ PP

                      HHHHHH CS
  Glyco_transf_20 468 flselk 473
                      f+se++
       CCE27105.1 475 FVSEMN 480
                      ***987 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   6.3e-06     0.056     106     170 ..     126     184 ..      58     206 .. 0.79
   2 ?    0.1   0.0      0.06   5.4e+02      27      65 ..     435     472 ..     434     501 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.3e-06
  Glyco_transf_5 106 edyednaerfalfsraalelleklgwkpdvihahDWhtalvpallkelykerglfkkiktvftiH 170
                     + ++  +e   lf++ +++ ++      d+i +hD+h +l+p +l+e  +  ++ kk+k+ f +H
      CCE27105.1 126 SAWAAYQEVNHLFAQTVIKDVQD----GDLIWVHDYHLMLLPQMLREEIA--KTKKKVKIGFFLH 184
                     44445555555666666666666....7*******************954..4667788888887 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.06
  Glyco_transf_5  27 kaLaklghdvrvilPrygaikeekkeleevaelskaaed 65 
                     ++La++ hd  +++P  +ai+ +k   + v++ +   ++
      CCE27105.1 435 EELANALHDAVTMSPEQRAINYKK-LERYVFKYTSSWWG 472
                     68999***************9986.44555565555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3563.73
//
Query:       CCE27106.1  [L=847]
Description: related to C.cardunculus cypro4 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.2e-187  622.4   0.4   2.8e-187  622.0   0.4    1.1  1  VID27            VID27 C-terminal WD40-like domain
    4.3e-74  248.1   0.5    4.3e-74  248.1   0.5    4.5  5  VID27_N          VID27 N-terminal region
    6.7e-41  139.0   1.2    1.4e-40  137.9   0.5    1.9  2  VID27_PH         VID27 PH-like domain
  ------ inclusion threshold ------
       0.13   11.9   7.8        0.4   10.3   1.0    2.2  2  CAC1F_C          Voltage-gated calcium channel subunit alpha,
        1.1    9.3  26.7       0.35   11.0   9.8    2.6  3  DUF2052          Coiled-coil domain containing protein (DUF20


Domain annotation for each model (and alignments):
>> VID27  VID27 C-terminal WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  622.0   0.4  7.9e-191  2.8e-187       2     354 ..     459     813 ..     458     815 .. 0.99

  Alignments for each domain:
  == domain 1  score: 622.0 bits;  conditional E-value: 7.9e-191
       VID27   2 knsqlavgykndrsfvvrgdkiGvfkhtddnelefstaiskvetlkgkllsPkkvmlheedrklilqdekdknklykmDlerGkvvdewkvhddipvve 100
                 +nsqlavgyk+drsfvvrg+kiGvf+ht dn+l+f+t+iskv+t++gkl+sPkkvmlh+edr+li+q+  d nkly+mD+e+Gkvvdewkvhddipvv+
  CCE27106.1 459 VNSQLAVGYKHDRSFVVRGSKIGVFSHTADNRLKFNTNISKVTTPSGKLMSPKKVMLHSEDRDLIIQNGVDANKLYRMDIEYGKVVDEWKVHDDIPVVT 557
                 7************************************************************************************************** PP

       VID27 101 fapekkfaqlteeqtllGlsknalfriDPrlsgnklvdselkqyaskndfsavattekGyiavasekGdirlfdrlginaktalPalgdpiigldvsad 199
                 fape+kfaq+t+eqt+lG+s+nal+r+DPrlsgnklvds++kqya+k+dfsa+attekGyiavas+kGdirlfdrlgi+ak +lPalgdpiig+dvsad
  CCE27106.1 558 FAPENKFAQMTSEQTFLGVSRNALYRVDPRLSGNKLVDSDMKQYATKTDFSALATTEKGYIAVASNKGDIRLFDRLGIRAKMQLPALGDPIIGMDVSAD 656
                 *************************************************************************************************** PP

       VID27 200 GrwvlatcktyllLiDalikegkneGklgfeksfakdskpkprrLklkpehvaqlqeetkkpvsftkakfntgldseettivtstGpfvitwslkkvlk 298
                 Grwvl+t+k+y+lL+D ++k gkn+G++gf+k+fa+d+kp+prrL+l+pehvaq+++et+kpvsft+akfntg+++ee++i+t+tGp++++w+lkkvl+
  CCE27106.1 657 GRWVLGTTKNYILLLDVQQKGGKNDGEVGFKKGFAADAKPRPRRLALTPEHVAQVHHETGKPVSFTPAKFNTGEGAEEKSIITATGPYIVEWDLKKVLR 755
                 *************************************************************************************************** PP

       VID27 299 gkkd..pYkikryeeevvadnfkfgsdknvivalkndvsmvkkkslkkptreslatea 354
                 g k+   Ykikry++ev+ad+fkfgsdknvival+n+v+mv+k+sl+kptres++ ++
  CCE27106.1 756 GAKAgaAYKIKRYQDEVKADDFKFGSDKNVIVALPNEVNMVAKQSLRKPTRESIMGDV 813
                 *997669***********************************************9876 PP

>> VID27_N  VID27 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.1   0.5   1.2e-77   4.3e-74       1     173 []       1     176 [.       1     176 [. 0.98
   2 ?   -2.6   3.3       1.2   4.2e+03      69      81 ..     233     245 ..     222     260 .. 0.51
   3 ?    0.9   0.1       0.1   3.6e+02     139     168 ..     365     394 ..     360     402 .. 0.82
   4 ?   -4.6   9.9         5   1.8e+04      69      87 ..     418     443 ..     413     465 .. 0.57
   5 ?   -1.8   0.0      0.68   2.4e+03     127     172 ..     555     601 ..     544     602 .. 0.80

  Alignments for each domain:
  == domain 1  score: 248.1 bits;  conditional E-value: 1.2e-77
     VID27_N   1 MfllkslgkllfgssskeelieipsGqLylvrpqspkgsselifkdAaasirrttqefqyqLvvqrvyeegeeelleeeeeedde.a..kkekdekvfl 96 
                 Mf+l+++gkl+fgss +e lie+p+GqLylvrp spkg+selifkd+a++irrt+qef+yqLvvqrv+eege+ell+eee +d+e +  ++e+dek+fl
  CCE27106.1   1 MFVLRNVGKLIFGSSVQEALIELPQGQLYLVRPLSPKGYSELIFKDSAIRIRRTNQEFHYQLVVQRVFEEGEAELLAEEEGDDAEiDalAAERDEKTFL 99 
                 9**********************************************************************************99625799******** PP

     VID27_N  97 ldeeLkfrveekedgekvlaWrdlsgdegdlyeFvvdesvkeeevkqfelvayqcqyErkyrksaekateedLeefe 173
                 lde+L+frve +e+ge+++aW+dlsgd+gdlyeFv+d++ ++++v++f +va qcqyErkyrk++++a++ed e+fe
  CCE27106.1 100 LDEALHFRVEGREGGETIFAWNDLSGDNGDLYEFVCDAQASADQVEAFVQVARQCQYERKYRKPHTTASDEDYEQFE 176
                 ***************************************************************************96 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
     VID27_N  69 eegeeelleeeee 81 
                 ee+eee +eeeee
  CCE27106.1 233 EEEEEEEEEEEEE 245
                 3333332222222 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.1
     VID27_N 139 eevkqfelvayqcqyErkyrksaekateed 168
                  ++++f+++++q+ +Er ++    ka++++
  CCE27106.1 365 PTLEKFQEAVMQAIWERLNETKWAKAQQKE 394
                 67899***********99888777776655 PP

  == domain 4  score: -4.6 bits;  conditional E-value: 5
     VID27_N  69 eegeeelleeeeeedde....a...k 87 
                 ee+eee +ee+eee+d+    +    
  CCE27106.1 418 EEEEEEEEEEDEEEEDQgwrrNddyD 443
                 44444444444444444233213233 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 0.68
     VID27_N 127 lyeFvvdes.vkeeevkqfelvayqcqyErkyrksaekateedLeef 172
                 ++ F  +++  ++++ ++f  v  ++ y    r s +k  ++d++++
  CCE27106.1 555 VVTFAPENKfAQMTSEQTFLGVSRNALYRVDPRLSGNKLVDSDMKQY 601
                 477888855145677789999************9****999999998 PP

>> VID27_PH  VID27 PH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.5   8.8e+03      27      44 ..      49      65 ..      41      73 .. 0.67
   2 !  137.9   0.5     4e-44   1.4e-40       2     108 ..     275     380 ..     274     381 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.5
    VID27_PH 27 vkaavielgkweYwLqie 44
                +++  ++ ++++Y+L+++
  CCE27106.1 49 IRIRRTN-QEFHYQLVVQ 65
                4444433.5799999987 PP

  == domain 2  score: 137.9 bits;  conditional E-value: 4e-44
    VID27_PH   2 llaeeeaeLhlfDaesgeFilqeeevkaavielgkweYwLqiegeeekewlgqevsadmnpvfnfeylsfifnyvsedgealSwlLrFkdeeeleefqe 100
                 ++a+  aeLh+fD++ g+F+l +++  a+v+e+g+w+YwLqie+++ k wlg++v++++npvf+feylsf+fn++s+dg+a SwlLrFkd+++le+fqe
  CCE27106.1 275 IYAALPAELHVFDPQPGHFVLVDDSAIATVSEVGQWQYWLQIENQQ-KAWLGTSVVPEFNPVFDFEYLSFVFNHFSSDGTARSWLLRFKDQPTLEKFQE 372
                 678889*************************************877.88************************************************** PP

    VID27_PH 101 almralwe 108
                 a+m+a+we
  CCE27106.1 373 AVMQAIWE 380
                 *******9 PP

>> CAC1F_C  Voltage-gated calcium channel subunit alpha, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.9    0.0041        15      17      57 ..     230     270 ..     219     309 .. 0.68
   2 ?   10.3   1.0   0.00011       0.4      16     102 ..     415     502 ..     401     550 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0041
     CAC1F_C  17 laedleeeeeeaeleeeeedleasaapkaelesqpesrrss 57 
                 la + eeeeee+e+ee    + +++ap+++++  p+ +  +
  CCE27106.1 230 LAAEEEEEEEEEEEEEALVSEPQNDAPEQSVSQPPPVESAP 270
                 45566666666665555666666666666665555554433 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00011
     CAC1F_C  16 Alaedleeeeeeaeleeeeedleasaap.kaelesqpesrrssavsvsltveeelpdslsapsddrgvsskissrkpsvkqslssetk 102
                 A+ e+ eeeeee+ +eee++    ++++  +e e+  + +r+ +v+ +l+v+ + + s     ++ gv s+++ ++ +++ ++s+ t 
  CCE27106.1 415 AVREEEEEEEEEEDEEEEDQGWRRNDDYdSEEDEAAEDNKRDGEVNSQLAVGYKHDRSFVVRGSKIGVFSHTADNRLKFNTNISKVTT 502
                 5666777777777767777777778788556667778889999********9999999886666777777777777777776664332 PP

>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.5       1.9   6.9e+03     111     111 ..      96      96 ..      49     180 .. 0.47
   2 ?    9.8   2.3   0.00022       0.8      74     108 ..     217     257 ..     194     294 .. 0.55
   3 ?   11.0   9.8   9.7e-05      0.35      51     123 ..     368     456 ..     357     475 .. 0.55

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.9
     DUF2052 111 e 111
                 +
  CCE27106.1  96 K 96 
                 1 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00022
     DUF2052  74 leaqqeel........eeeeeeeeeeeeeeeeeeeeeeedeke 108
                  +++ +++        eeeeeeeeeeeee  +   e+++d +e
  CCE27106.1 217 ANKEAMAThrerllaaEEEEEEEEEEEEE--ALVSEPQNDAPE 257
                 22222222334445422322222222222..222222223322 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 9.7e-05
     DUF2052  51 dskeeslseiLlrreeeaaaaerleaqqeel..................eeeeeeeeeeeeeeee.eeeeeeedekekaeadeedeeeeeek 123
                 ++ +e++ +++ +r++e++ a+  ++++e                    +   eeeeeeeeee+e ee+++   +++ +++++e +e+++++
  CCE27106.1 368 EKFQEAVMQAIWERLNETKWAKAQQKEREYVldafndltmedapsldavR---EEEEEEEEEEDEeEEDQGWRRNDDYDSEEDEAAEDNKRD 456
                 44567777788888888887776666666559********9999986542...222222222222033333333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1706  (0.0951531); expected 358.6 (0.02)
Passed bias filter:                      823  (0.0459033); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.01u 0.35s 00:00:01.36 Elapsed: 00:00:00.48
# Mc/sec: 5334.98
//
Query:       CCE27107.1  [L=568]
Description: uncharacterized protein CPUR_00579 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-80  270.8   0.0    2.4e-80  270.4   0.0    1.1  1  Prenylcys_lyase  Prenylcysteine lyase
    1.1e-13   51.1   0.0    4.5e-13   49.2   0.0    2.1  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    6.4e-09   35.6   0.0    1.8e-08   34.2   0.0    1.7  1  Amino_oxidase    Flavin containing amine oxidoreductase
    2.3e-05   24.2   0.6      5e-05   23.0   0.1    1.8  2  DAO              FAD dependent oxidoreductase
    0.00054   20.0   0.0     0.0012   18.9   0.0    1.6  1  NAD_binding_9    FAD-NAD(P)-binding
     0.0041   16.4   0.1     0.0078   15.5   0.1    1.4  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
  ------ inclusion threshold ------
      0.012   14.7   0.2       0.02   14.0   0.2    1.3  1  GIDA             Glucose inhibited division protein A
      0.013   15.2   0.2      0.024   14.3   0.2    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
      0.076   12.2   0.0       0.15   11.3   0.0    1.4  1  Thi4             Thi4 family
      0.078   11.8   0.0        0.1   11.4   0.0    1.2  1  Trp_halogenase   Tryptophan halogenase
       0.17   11.9   0.0       0.34   11.0   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> Prenylcys_lyase  Prenylcysteine lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.4   0.0   1.5e-83   2.4e-80       7     354 ..     142     519 ..     136     524 .. 0.90

  Alignments for each domain:
  == domain 1  score: 270.4 bits;  conditional E-value: 1.5e-83
  Prenylcys_lyase   7 sllnllkLlwrYGlsllrlqmwveeildkFlriYelqekgyaFssveellealggkefleltkvtleealekagisekfinelvqavlrvnYg. 99 
                       +++ +kL+++YG++++++ ++v+  +++Fl++Ye  ++ ++F+s+++++ +lg   +++lt vt+ee+l+++ i+  f+++l+q+++rvnY+ 
       CCE27107.1 142 WWWDAAKLFLKYGIAPYKAMQLVKRSVGTFLQLYE--APYFPFRSLTQRVFELG---LVQLTGVTGEEILQENKINADFVRDLMQPATRVNYAs 230
                      59*********************************..****************9...************************************9 PP

  Prenylcys_lyase 100 qsvkinalvgavslAgaqsglwavegGnkqvcsgllkkskanv.inatVtsiel....ksgessslYevtykk....es.gtesklyDiVviAt 183
                      + + i++l+++vs A  ++g++++ gGn q+++++++ s a+   n+tV+ i+     ++ +s  +Y +++k+    ++    s ++D V+iA+
       CCE27107.1 231 NVAFIHGLEAIVSFA--TEGAISISGGNYQIFEKMVHCSGASYrPNTTVSTISFhkgtNKPGSIPQYVLSTKDassnAKpARLSTAFDSVIIAS 322
                      9999***********..**************************8899******9444433445689*****995544223455789******** PP

  Prenylcys_lyase 184 Plqkkesnisfenfsppieefkeeyqklvatlvag..rlnssyFglkeksefplstilttenpelei.........nslssvssvetskskeek 266
                      P+q++ ++ s+  ++++i+ +  +y kl++tl+a+  +l   yFglk + + +++++ tt  +++ +           ++ +s++++ +++++ 
       CCE27107.1 323 PWQYSGMEASEGVMTHRIDAI--PYMKLHVTLFASpfKLHAPYFGLK-PGTAAPRSVYTTLGKDEAAqagpkgvgrTGFYAMSTLRKVTNPKT- 412
                      *******************95..9***********************.666666888888877777779******99*********9998866. PP

  Prenylcys_lyase 267 kakeekvykifSkeplskeqlkkll..............ssyesvkekeWla......YPkysppetleefiLhdrlYYlnaiEsaaSamEmsa 340
                       +k+e++ykifS e +++++l+ +l              +   +v +++W+       YP   p++t++++i+  ++YY++++Es++S+mE+ a
       CCE27107.1 413 -HKKEYLYKIFSAEAVNSTFLSAILgrdvpasivaantsEADAEVGQISWYYphwfysYPIALPRVTFQDPIVGRGVYYTSGMESFISTMETNA 505
                      .7999*************************9999998763336777777766666666************************************ PP

  Prenylcys_lyase 341 iagkNvAlLaanrw 354
                      ++g+NvA+L++++ 
       CCE27107.1 506 LMGMNVARLIVDDV 519
                      **********9886 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   2.8e-16   4.5e-13       1      54 [.      34      96 ..      34     108 .. 0.84
   2 ?   -3.2   0.0       6.5   1.1e+04      23      37 ..     258     272 ..     254     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 2.8e-16
                   EE--SHHHHHHHHHHHCC....TE..EEEEE-SSSSSSGGG-EECE...TTCEECTS---EEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka....gf..dvlllekrdrlGGraasyev...pgvrvdygahifhg 54
                   I+GaG++G++aAy+L+k+    ++  +++l+ek d++GGr  +++    p++rv++ga+if +
     CCE27107.1 34 IIGAGAAGSSAAYHLHKYaheaNLilNITLFEKTDHIGGRTLTVNPfddPQQRVELGASIFIK 96
                   9***************96444433669*****************8876677**********66 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.5
                    EEE-SSSSSSGGG-E CS
  NAD_binding_8  23 lllekrdrlGGraas 37 
                    +++ek  +++G +++
     CCE27107.1 258 QIFEKMVHCSGASYR 272
                    689999999998875 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   1.1e-11   1.8e-08       2     261 ..      40     323 ..      39     328 .. 0.68

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.1e-11
                    HHHHHHHHH....HHTT..EEEEEEESSSSSBTTS-EEEET...TEEEESS--EEETTTHHHHHHHHHTTCCCCEEEESCC.GCEEEEETTEECC. CS
  Amino_oxidase   2 aGLaaArqL....lsaG..fdVtvlEardrvGGRirtvrsd...GylielGamwftgagnpllellkelgledslslpdpg.apkrvlskggref. 86 
                    aG +aA++L    ++a+  +++t++E +d++GGR  tv+      + +elGa++f  ++  +++  + +gl++s++ +d++ +++++++ g++++ 
     CCE27107.1  40 AGSSAAYHLhkyaHEANliLNITLFEKTDHIGGRTLTVNPFddpQQRVELGASIFIKDNRIMYNATQTFGLNLSTR-KDSApTDYTAIWDGETIVf 134
                    5669*****999888889*******************98664556*****************************98.4444489*****9999988 PP

                    ............TTEECHHHHHHHHHHHHHHHH.....CHHHHHHHHHHHHHHHHH...HHHCCCCHH..HHHHHHHCHHHHHHHHHHHHHHHHHH CS
  Amino_oxidase  87 ............pgdlspvpaewealleqgals.....aellsleeklrlgleall...qktldeldl..dskslaesleelgrrepgdvevwdrl 160
                                           + +l++g+ +       ++s++  l+l  ++ +   + t ++++l   + +  + +e l ++   + + ++ l
     CCE27107.1 135 rseegtpwwwdaA----------KLFLKYGIAPykamqLVKRSVGTFLQLYEAPYFpfrSLTQRVFELglVQLTGVTGEEILQENKINA-DFVRDL 219
                    8444444444433..........333333333333333455556666666666666555333333333002222222222333333333.445555 PP

                    HHHHHHHHHHHHHHCHTSTTTTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHHTTTTEEEETSEEEEEEEE..ETTC......EEEEETTS CS
  Amino_oxidase 161 iepelfaklefasglfagdpselsaklalpllwelegfggslllprgGlsqlpealaeelrgldirlntrVkeikr..egdg......vtvtledg 248
                    + p        a ++      +++  + + l+  ++   ++ + + gG  q+ e +    +g + r nt V+ i+   + ++      + + ++d 
     CCE27107.1 220 MQP--------ATRVN----YASNVAFIHGLEAIVSFATEGAISISGGNYQIFEKMVH-CSGASYRPNTTVSTISFhkGTNKpgsipqYVLSTKDA 302
                    554........33332....34556777777777777777777788888888888888.8899999999999999977444456677788888888 PP

                    TEE........EESEEEE-S- CS
  Amino_oxidase 249 evv........eaDaVvvTvp 261
                    +++         +D+V++++p
     CCE27107.1 303 SSNakparlstAFDSVIIASP 323
                    888888888888999999887 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   3.1e-08     5e-05       2      35 ..      32      72 ..      31      76 .. 0.83
   2 ?   -2.2   0.0       1.5   2.4e+03      31      49 ..     519     539 ..     512     559 .. 0.69

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 3.1e-08
                EEEECTSHHHHHHHHHHHHT.T.......EEEEESSSSTTSS CS
         DAO  2 vviiGGGiiGlstAyeLarr.g.......Vtllekgdiagsg 35
                ++iiG+G +G+s+Ay+L +  +       +tl+ek d +g g
  CCE27107.1 32 IAIIGAGAAGSSAAYHLHKYaHeanlilnITLFEKTDHIG-G 72
                9****************554324669999*******9999.5 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
                 STTSSGGGSSEEEEESSS..S CS
         DAO  31 iagsgaSgrnsgllhsgl..r 49 
                   g++a g+n+g+++ gl  +
  CCE27107.1 519 VMGTAAGGANGGQIRKGLgvA 539
                 567789999999999998331 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   7.2e-07    0.0012       1      40 [.      33      73 ..      33      88 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 7.2e-07
  NAD_binding_9  1 aivGaGprGlavlerLlara.kkkspleitlfdp.sepgagr 40
                   ai+GaG++G +++ +L + a +    l+itlf++ +++g gr
     CCE27107.1 33 AIIGAGAAGSSAAYHLHKYAhEANLILNITLFEKtDHIG-GR 73
                   8******************9666666********55556.65 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   4.8e-06    0.0078       2      29 ..      31      58 ..      16      92 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.8e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlv 29
                 ++++iG+G+AG +aa +l ++ ++  l+
   CCE27107.1 31 NIAIIGAGAAGSSAAYHLHKYAHEANLI 58
                 6778888888888888888866655555 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   1.2e-05      0.02       2      36 ..      32      71 ..      31      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEE.....ES-GGGTT CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi.....thkldtia 36
                + +iG+G AG+ AA+++ +  ++  Li      +k+d+i+
  CCE27107.1 32 IAIIGAGAAGSSAAYHLHKYAHEANLIlnitlFEKTDHIG 71
                78************************98888888888887 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   1.5e-05     0.024       1      29 [.      32      60 ..      32      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-S CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilr 29
                iai+GaGa Gs  a++L+k +++  lil+
  CCE27107.1 32 IAIIGAGAAGSSAAYHLHKYAHEANLILN 60
                89*****************8888777765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.2e-05      0.15      18      55 ..      30      72 ..      27     103 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.2e-05
                EEEEEE--SHHHHHHHHHHHHC...TT..S-EEEEESSSS--T CS
        Thi4 18 sDvvivGaGssGLtaayylakk...pd..lkvailersvspGG 55
                 +++i+GaG++G +aay l k     +  l+++++e+   +GG
  CCE27107.1 30 KNIAIIGAGAAGSSAAYHLHKYaheANliLNITLFEKTDHIGG 72
                5799**************9875311333356777777777776 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.4e-05       0.1       1      34 [.      31      67 ..      31     108 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.4e-05
                    EEEEE--SHHHHHHHHHHHHHTTTS...SEEEEEE-S CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgk...levtlvese 34
                    +i i+G+G aG+ aA +l+k+ ++    l++tl e+ 
      CCE27107.1 31 NIAIIGAGAAGSSAAYHLHKYAHEAnliLNITLFEKT 67
                    599*****************99876677899998875 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.34      12      46 ..      29      63 ..      20      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
                  T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSH CS
  Shikimate_DH 12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtl 46
                   k++ +iGaG  ++ +a hL++   ++ +++N tl
    CCE27107.1 29 VKNIAIIGAGAAGSSAAYHLHKYAHEANLILNITL 63
                  689******************99999999999774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4132.10
//
Query:       CCE27108.1  [L=925]
Description: probable period clock protein FRQ [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
          0 1402.1  50.9          0 1393.1  50.9    2.9  1  FRQ       Frequency clock protein
  ------ inclusion threshold ------
       0.95    8.8   3.1        0.9    8.8   1.4    1.8  1  FAM76     FAM76 protein


Domain annotation for each model (and alignments):
>> FRQ  Frequency clock protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1393.1  50.9         0         0       9     982 .]       7     923 ..       2     923 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1393.1 bits;  conditional E-value: 0
         FRQ   9 hPlPrrtspeksvtLrhhrlardaslrassgsaaakassessssprrnssgeshetgqsdpkkWfdqsnenPtatfdsnamdvdpPffqkesdssnedk 107
                 +PlPrr+speksvtL+h+r++rd+sl+assgs++ak+s+ +sssprr+ssg+s+etgqsdpk+WfdqsnenPta+fd+ amdvdpPf+qk+sdssnedk
  CCE27108.1   7 SPLPRRSSPEKSVTLKHFRVTRDVSLKASSGSTPAKDSN-TSSSPRRDSSGDSNETGQSDPKNWFDQSNENPTADFDNAAMDVDPPFYQKQSDSSNEDK 104
                 7***********************************999.9********************************************************** PP

         FRQ 108 pvsypkklkppklsaarsssadDYrsviDDLtveikkLkeeLkrykqkGpdllrkdkLfeikvhGLPkrkkreLeatLrdfaasledspdaesssrrkk 206
                 p++y++++ +p+l++++sssadDYrsviDDLtvei+kLkeeLkrykq+Gpd+++kdkLfeik+hGLPk+k+reLe+tLrdfa+s+e+s +++ s+r kk
  CCE27108.1 105 PYTYRNAEPRPRLATGQSSSADDYRSVIDDLTVEIQKLKEELKRYKQRGPDMMKKDKLFEIKYHGLPKSKRRELETTLRDFAGSIEGSLNETPSQR-KK 202
                 *****************************************************************************************9999998.88 PP

         FRQ 207 ssrhatrdklesgsgslskhassssGsnsrpvDsaYasmstganssGtslarpslssraksseqkvenYLrdiPeGLyPrhlvltdkekkkLvvrrLeq 305
                 + r+++rd+++s+s+++skhassssGsn+rpvDsaYasms+ganssGt+ ++++++srak ++ kve+YLrdiPeGLyPr+++ltd+ekkkLvvrrLeq
  CCE27108.1 203 FLRQSNRDHMYSDSAFASKHASSSSGSNNRPVDSAYASMSSGANSSGTYPGQTTTKSRAK-NDLKVESYLRDIPEGLYPRNITLTDREKKKLVVRRLEQ 300
                 9***********************************************************.9************************************* PP

         FRQ 306 lftGkisGrnlrr..kqakasaevaa.vlaelapevateqkstvheppklktaakepsrearilaeeqqsgesekksrskdngsasnsngdqtesggng 401
                 lftGk++Gr+ r+  ++ +a++++a+ ++ael+p+  +eq+stv+e p       e++rea+il+++qq+g++ekk++s+d++s+snsngd++esg+ng
  CCE27108.1 301 LFTGKFGGRHGRHlmQRLHAPGMLASeIDAELQPKLLREQQSTVTEGP-------EACREAKILPQDQQYGPYEKKNQSRDTASTSNSNGDHVESGANG 392
                 **********999767788888888789************99999998.......99****************************************** PP

         FRQ 402 assrsgtntsPpdapapeqrPtrpkDLDPdrvqvPsenmdYirhLGlvpPellaekseeDvspDaeGWvYLnLlCnlaqLhilnvtPdfvrsavsekst 500
                  +srsg+ntsP++++a +qrPtr+kDLDPdrvqvPsenmdYirhLG+vpPell+ +s++Dv+pDa+GWvYLnLlCnlaqLhi+nvtP+fvr+av+e+st
  CCE27108.1 393 IGSRSGANTSPTQPEALDQRPTRVKDLDPDRVQVPSENMDYIRHLGMVPPELLT-ESHKDVQPDADGWVYLNLLCNLAQLHIVNVTPSFVRNAVTEIST 490
                 *****************************************************9.7899**************************************** PP

         FRQ 501 kfqLspDGrkirWrGgtdGtkfssdssgdksqkspstedtdesk.eekrkkqkterstkdglsessskeaskfgpqvsassdsfhYkPlfvhqsssneq 598
                 kfqLspDGrkirWrG+++Gt+fssdss++++q++p+t+++de   e+  k+qkt+++     +e++s++++kf pq+s+++d+fhYkPlf++++s+n+ 
  CCE27108.1 491 KFQLSPDGRKIRWRGCSEGTRFSSDSSNNSNQTTPDTREADEIIlEMPFKRQKTDNF-----PEYESTSRTKFVPQMSTPPDCFHYKPLFARNNSPNGG 584
                 ******************************************999*********995.....778999******************************* PP

         FRQ 599 tslddtlssfgpveesnagesrwglsGsGtskrrkrrrDGaiiYYsGaPfCtDLsGDpGDvsPtsyllssgqdkeessaqlsrpapqrtesGsslayrP 697
                 tsl+dtlssf+p+eesn++ sr+glsGs     rkrr+DGaiiYYsGaPfCtDL+GD+GDvsP++y+ls+gqd+ e  ++l+rp+++rt+sGssl++rP
  CCE27108.1 585 TSLNDTLSSFDPMEESNIDGSREGLSGS-----RKRRHDGAIIYYSGAPFCTDLAGDSGDVSPATYMLSTGQDQPE--PKLERPHAHRTDSGSSLPIRP 676
                 ****************************.....9***************************************988..7899***************** PP

         FRQ 698 Lsdakkalssavklevdeee...pelvtdsddessdielefpWsdkqqaleveklepcGLGGvlPdDhfmvvvttkrskkdalasqssseklseeaaea 793
                 Lsd++++++s++k++vd +e   p+l+t+s++es   ele +Ws++qq++++ +lepcGLGGv+PdDhfmv+vttkr+k++++ +qsss+         
  CCE27108.1 677 LSDWNQDRDSVMKMDVDGPEedvPDLATESESESGISELEPCWSTSQQFMDFIPLEPCGLGGVMPDDHFMVIVTTKRHKDEMAFGQSSST--------- 766
                 *****************888889**************************************************************99721......... PP

         FRQ 794 iverlasmstsspvelakkklskeesakieieYlsgrikrlaPvpLPPPaiffppfstdsdssesddeassdedd..eeesseelvsrranphqsdgYp 890
                   +r + +++s            ++ a+ieieYlsgrikrlaPv+LPPP+if+ppfs++++ss +dd+a++d+++   +e+s el++r+anp++s+gY+
  CCE27108.1 767 -CRRTSGTAAS------------TPDARIEIEYLSGRIKRLAPVSLPPPVIFLPPFSSNDSSSVDDDDADADDEEdgGIETSVELMRRQANPRHSNGYA 852
                 .2333333333............34678***********************************9999998887754789******************** PP

         FRQ 891 dkvdlssgdeegeepddddeakekeeedssdekklprlprearrassssaeaaaGtargrsksas...aeallkatgssvataGgvesgysssse 982
                 +++ lssgd+++eep +d   k+++                        +++++G++r++++s++   ++ +l++++ssvataGgv+s+yss +e
  CCE27108.1 853 NMEALSSGDQDDEEPGEDGGVKMDD------------------------QMDTDGDLRSEQQSSAgagVDGMLRTAASSVATAGGVRSHYSSIDE 923
                 ******************9998855........................3445666666655554334899*********************875 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.4    0.0001       0.9     174     249 ..      68     163 ..      20     214 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0001
       FAM76 174 kkskkhkkrss................rlevskleeek.........laeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdk 247
                 +   +++++++                +++ s+ e +k         + + ++++++s++   s   d  v++++Lkee+++ k+    +  ++++kdk
  CCE27108.1  68 NWFDQSNENPTadfdnaamdvdppfyqKQSDSSNE-DKpytyrnaepRPRLATGQSSSADDYRSVIDDLTVEIQKLKEELKRYKQ----RGPDMMKKDK 161
                 11111122222334444444555554322222222.1134444444566666677777778999999999999999999987664....5555555555 PP

       FAM76 248 ki 249
                   
  CCE27108.1 162 LF 163
                 33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (925 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 5959.30
//
Query:       CCE27109.1  [L=530]
Description: probable phosphoglyceromutase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-76  256.7   0.0    1.9e-76  256.3   0.0    1.2  1  iPGM_N         BPG-independent PGAM N-terminus (iPGM_N)
    1.2e-67  227.9   0.0    1.4e-67  227.7   0.0    1.1  1  Metalloenzyme  Metalloenzyme superfamily
    9.8e-07   28.5   0.0    1.2e-05   24.9   0.0    2.1  1  Sulfatase      Sulfatase
    0.00025   20.8   0.0     0.0006   19.5   0.0    1.7  2  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.024   14.1   0.0    1.3  1  AP_endonuc_2   Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> iPGM_N  BPG-independent PGAM N-terminus (iPGM_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.3   0.0   5.4e-80   1.9e-76       1     214 [.      88     303 ..      88     304 .. 0.95

  Alignments for each domain:
  == domain 1  score: 256.3 bits;  conditional E-value: 5.4e-80
                 HHHHHHCTGGGG-HHHHHHHHHHHHCTSEEEEEEE-SS--SS--CHHHHHHHHHHHHTT-SEEEEEEEE-SSSSTTT-HHHHHHHHHHHHHHCT--EEE CS
      iPGM_N   1 inkaiedgslfenealkeaiekakkngkalHllGLlSdGgVHShidhllallelakeegvkkvvvhaflDGRDtapksaleyleeleeklkelgvgkia 99 
                 i+++i++g+l +n ++k+++e+a++ +++lHl+GL+S+GgVH+++dhl+all++ake++v+kv++h+f DGRDt+pks+++y++el ++lkelg+gkia
  CCE27109.1  88 IDQTIKKGELSQNATIKKTFESAAAGNGRLHLCGLVSHGGVHAKQDHLYALLRAAKEYKVPKVFIHFFGDGRDTDPKSGAGYMQELVDYLKELGIGKIA 186
                 899************************************************************************************************ PP

                 EEEEHHHHT--SS-HHHHHHHHHHHCCSSSEEECTTHHHHHHHHHH...TT--GGG---EEE...TCCGGS--TT-EEEE----CCCCHHHHHHHH..S CS
      iPGM_N 100 svsGRyyaMDRdkrwervekaydalvkgegeskaesaveaieesya...kgetDefveptviaeegkkegtikdgDaviffNFRaDRareltralt..d 193
                 +v+GRyyaMDRdkrwerve a + +++gege+ +e++v++++++y+   ++  Def+ p+++   g +eg+ikd+D+v+ffN+R+DRar++t++l   d
  CCE27109.1 187 TVVGRYYAMDRDKRWERVEIALKGMCHGEGEA-SEDPVATVKAHYElggDKDRDEFLLPIIV---GGDEGRIKDDDTVFFFNYRSDRARQITQLLGdvD 281
                 ****************************9987.689**********999889**********...8899***************************442 PP

                 TT.HHCC.--TT-EEEESS-S- CS
      iPGM_N 194 ke.fkefekakklklvtmteYd 214
                 ++ + +f+ +k  klvtmt+Y+
  CCE27109.1 282 RSvLPDFKYPKISKLVTMTTYK 303
                 22367777777889*******8 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.7   0.0   3.9e-71   1.4e-67       2     246 ..       7     509 ..       6     511 .. 0.95

  Alignments for each domain:
  == domain 1  score: 227.7 bits;  conditional E-value: 3.9e-71
                    EEEEEEETTBB----...GGGTTHHHS--HHHHHHHHH........SEEEEEESSSTT----HHHHHHHH.......................... CS
                    xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
  Metalloenzyme   2 kvvlvvlDGlGeapa...delnaihvAktPtldkLkkeaPerw.likahgtavglpeddmgnsevgHlel.......................... 67 
                    k+ l+v+DG+G+  +   ++ +ai   ktP++d+L k+    +  ++a+ +avglpe+ mgnsevgHl++                          
     CCE27109.1   7 KACLIVIDGWGIPSEtspKNGDAITNGKTPVMDELSKN-TDGFtELEASSLAVGLPEGLMGNSEVGHLNIgagrvvwqdvvridqtikkgelsqna 101
                    789********876654466667************999.67777**************************************************** PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Metalloenzyme  68 ................................................................................................ 67 
                                                                                                                    
     CCE27109.1 102 tikktfesaaagngrlhlcglvshggvhakqdhlyallraakeykvpkvfihffgdgrdtdpksgagymqelvdylkelgigkiatvvgryyamdr 197
                    ************************************************************************************************ PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Metalloenzyme  68 ................................................................................................ 67 
                                                                                                                    
     CCE27109.1 198 dkrwerveialkgmchgegeasedpvatvkahyelggdkdrdefllpiivggdegrikdddtvfffnyrsdrarqitqllgdvdrsvlpdfkypki 293
                    ************************************************************************************************ PP

                    .......................................HHHHTT-----EEEEEEEE-S---SS...HHHHHT--EE.EE--SHHSTT--HHHHH CS
                    .......................................xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
  Metalloenzyme  68 .......................................lrisetvkfahvtffwnggrsgyfnp...leereeipsd.tvitfdlqpemkaveva 120
                                                           ++i+et+k+ahvtff+ngg+++ f+     +e+  +ps+ tv+t+d +pem+a  va
     CCE27109.1 294 sklvtmttyktdypfevafapqhmgnvlaewlgkqnvaqVHIAETEKYAHVTFFFNGGVEKVFPLetrDQEQDLVPSNkTVATYDKAPEMSADGVA 389
                    ***************************************99********************99875123455579985379*************** PP

                    HHHHHHH.CC.-SEEEEEE-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHTTS-TTTEEEEEE-SSB--TTTSS........-----EEEEEESTT- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 121 ekaldailsgkfdlvvvniknaDmvGHtgdleatiaaieaaDeavkeildaieqvdgilvvtADHgnaedmvkrdkqplTsHtlepVPilivgkgl 216
                    +++++ + +++f +v+ n++ +DmvGHtg +ea+i ++ea D+a+++il+ +++++ il++t+DHgnae+m+ +d +p TsHt+++VP+++++   
     CCE27109.1 390 DQVCKRLAEQQFPFVMNNFAPPDMVGHTGVYEAAIVGCEATDKAIGKILESCKKEGYILFITSDHGNAEEMKFEDGKPKTSHTTNKVPFIMANAP- 484
                    ******************************************************************************************99884. PP

                    ---S--SSHHHHT.T-TTEEEEGGGHHHHHH CS
                    xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
  Metalloenzyme 217 apdkvkegakfre.kggLanvaatllnllgl 246
                    +      g  +++ +g L++va+t+l+ +gl
     CCE27109.1 485 K------GWSLKQaDGVLGDVAPTILSAMGL 509
                    2......3333334*************9997 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   3.3e-09   1.2e-05     188     308 ..     409     508 ..     282     509 .. 0.66

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 3.3e-09
                 TCGGHTCCGSTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSH CS
   Sulfatase 188 apdeyakkyatffddgseaarqlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgeka 286
                 ap++ ++ +             ++ea     e +D++ig++l+      +++  ++++tSDhg +  e    + +gk  ++++   +vP++++   +  
  CCE27109.1 409 APPDMVGHT------------GVYEAAIVGCEATDKAIGKILESC----KKEGYILFITSDHGNAE-E--MKFEDGKP-KTSHTTNKVPFIMANAPKGW 487
                 444444443............566666777799************....8888999999*****54.4..79*****9.999999*******9876666 PP

                 C.EEECSEEEGGGHHHHHHHHTT CS
   Sulfatase 287 p.rvseelvshiDlfptildlag 308
                 + ++ +++    D++ptil+++g
  CCE27109.1 488 SlKQADGVLG--DVAPTILSAMG 508
                 6355555555..*********99 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   4.9e+03       3      37 ..      10      51 ..       9      55 .. 0.68
   2 !   19.5   0.0   1.7e-07    0.0006     158     237 ..     385     459 ..     289     483 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
                  EEEETT-B......TTHHHHHG.STSHHHHHHHHHSEEESEE CS
  Phosphodiest  3 vislDGlr......adlldrla.ellpnlaaLakegvsapnl 37
                  +i++DG        ++  d++  +++p +++L k+   +++l
    CCE27109.1 10 LIVIDGWGipsetsPKNGDAITnGKTPVMDELSKNTDGFTEL 51
                  677777777777774444554437999999999988777665 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.7e-07
                   HCHTHSHHHHHCT..SSESEEEEEECCCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEE CS
  Phosphodiest 158 daafakvvlekel..ekpdlllvyleetDtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHGmadv 237
                   ++   ++ ++k+l  ++  +++ ++  +D vgH  G ++ +     +  Dkaig++le+ +++     + ++++SDHG a+ 
    CCE27109.1 385 ADGV-ADQVCKRLaeQQFPFVMNNFAPPDMVGH-TGVYE-AAIVGCEATDKAIGKILESCKKE----GYILFITSDHGNAEE 459
                   3333.234455556688899*************.66555.568899*****************....999********7765 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.7e-06     0.024      27     110 ..     132     205 ..     118     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.7e-06
                   HHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTTTSGHHHHHHHHH CS
  AP_endonuc_2  27 deelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlhpGtagagpkgseeeawerla 110
                   ++ l +l +a++e+ +  + +++f++  + d    ++       ++++ +++ ++LG+  + + +G   +++  +++ +wer+ 
    CCE27109.1 132 QDHLYALLRAAKEYKVPKVFIHFFGDGRDTDP---KSG----AGYMQELVDYLKELGIGKIATVVG---RYYAMDRDKRWERVE 205
                   556678999******************99776...555....89**********************...99**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3733.47
//
Query:       CCE27110.1  [L=154]
Description: uncharacterized protein CPUR_00582 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-19   68.3   0.2    9.9e-19   67.2   0.2    1.5  2  Med9        RNA polymerase II transcription mediator complex 
    0.00064   19.6   0.1    0.00082   19.3   0.1    1.1  1  Spc29       Spindle Pole Component 29
  ------ inclusion threshold ------
       0.01   16.1   0.2      0.014   15.7   0.2    1.2  1  Med21       Subunit 21 of Mediator complex
      0.015   15.1   0.0       0.02   14.7   0.0    1.2  1  Phage_GP20  Phage minor structural protein GP20
      0.066   13.3   0.9      0.089   12.9   0.9    1.1  1  UPF0242     Uncharacterised protein family (UPF0242) N-termin


Domain annotation for each model (and alignments):
>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.9   6.8e+03      27      48 ..      21      42 ..      12      45 .. 0.69
   2 !   67.2   0.2   2.8e-22   9.9e-19      15      78 ..      56     119 ..      48     121 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.9
        Med9 27 ktgelrhkLkkarelirelpgi 48
                +++el   L k+r+ ++   gi
  CCE27110.1 21 AVSELLIVLAKVRAGLQASNGI 42
                4566666677888887777776 PP

  == domain 2  score: 67.2 bits;  conditional E-value: 2.8e-22
        Med9  15 kdpnlsskdletktgelrhkLkkarelirelpgidrsveeqeaeieeleeqlakKrelLkkykn 78 
                 ++++ls kd++ +t++l+hkL++ar+++r lp+++rs+eeq++ei +le +++k+r lL+++++
  CCE27110.1  56 QGQQLSFKDVPGATDGLKHKLQQARAQVRCLPDMERSIEEQNREIHDLERRIEKQRVLLENLRE 119
                 5678*********************************************************998 PP

>> Spc29  Spindle Pole Component 29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   2.3e-07   0.00082     100     156 ..      67     123 ..      61     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.3e-07
       Spc29 100 glapsdesrldsiyssvkkivelekklddqkleIkeLkreleqqrtvnseLqekvae 156
                 g ++  + +l++ + +v+   ++e+ +++q+ eI+ L+r +e+qr + ++L e   +
  CCE27110.1  67 GATDGLKHKLQQARAQVRCLPDMERSIEEQNREIHDLERRIEKQRVLLENLREDGIR 123
                 55555578899***************************************9886555 PP

>> Med21  Subunit 21 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.2   3.8e-06     0.014      79     123 ..      72     116 ..      48     130 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.8e-06
       Med21  79 lilkeqqIeyLIssLPgigsseeeqeerikeLeeelreveeeree 123
                 l  k qq ++ +  LP+++ s eeq ++i +Le+ +++ +  +e+
  CCE27110.1  72 LKHKLQQARAQVRCLPDMERSIEEQNREIHDLERRIEKQRVLLEN 116
                 56788999999**********************999887665555 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   5.4e-06      0.02      19      69 ..      61     111 ..      31     119 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.4e-06
  Phage_GP20  19 kldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkak 69 
                 ++++v  + d lk +l+++  q+  L ++    ee +++i +l+  ++k+ 
  CCE27110.1  61 SFKDVPGATDGLKHKLQQARAQVRCLPDMERSIEEQNREIHDLERRIEKQR 111
                 6899999***************************************99975 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.9   2.5e-05     0.089     121     167 ..      71     116 ..      56     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
     UPF0242 121 qLqekleaiaedfeelkleleeqLaekqellqeyqetieeqrsvlek 167
                  L+ kl+++ +++ + + ++e  ++e++  ++++++ ie+qr  le+
  CCE27110.1  71 GLKHKLQQARAQV-RCLPDMERSIEEQNREIHDLERRIEKQRVLLEN 116
                 69999**977776.67899************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      703  (0.0392102); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1154.15
//
Query:       CCE27111.1  [L=365]
Description: related to tubulin folding cofactor C [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-29  101.0   0.7    5.9e-29  100.2   0.7    1.4  1  TBCC            Tubulin binding cofactor C
      6e-10   39.6   0.2      6e-10   39.6   0.2    1.5  2  TBCC_N          Tubulin-specific chaperone C N-terminal domai
  ------ inclusion threshold ------
      0.012   15.7   0.1      0.053   13.6   0.0    2.1  2  F_actin_bind    F-actin binding
       0.17   11.5   0.1       0.51   10.0   0.1    1.7  1  LRR_RI_capping  Capping Ribonuclease inhibitor Leucine Rich R


Domain annotation for each model (and alignments):
>> TBCC  Tubulin binding cofactor C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.7   1.3e-32   5.9e-29       5     120 .]     203     316 ..     199     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 1.3e-32
                 EE-S-BS-EEEE......-S--S-EEEES-BS-EEE----SS-EEEES-BS-EEE---SEEEEES-BS-EEE---SSEEEEES-BSEEEE------TTS CS
        TBCC   5 kisnlsdctiyl......ldplssvtiddcknctivlgpvsgsvfiedcenctivvacrqlrihdctnvdvylltksrPiiedskgirfapynlsypel 97 
                 ++++l+ c +++       +p+  + +++++++ i+ g+v+g+v+i++++n+ ivv++rq+rih+c++vd+y++++s Piied++g+rfap++  y+  
  CCE27111.1 203 SLTDLQCCIVDMsvptaqGRPFPGLSLKNISQSLIIAGHVDGAVHITGVTNSIIVVIARQVRIHECKDVDIYMHCTSHPIIEDCTGMRFAPIPECYAAS 301
                 7899999999999999989999*********************************************************************99999766 PP

                 HHHHHHHT--SS---.-S-EE-- CS
        TBCC  98 eehlkkagldpennnlwsevddf 120
                 +        + + n+ w++vddf
  CCE27111.1 302 N-------DSGKVNQ-WNQVDDF 316
                 5.......4555666.******9 PP

>> TBCC_N  Tubulin-specific chaperone C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.2   1.3e-13     6e-10      32     115 ..       5      89 ..       2      89 .. 0.96
   2 ?   -3.6   0.2       3.2   1.4e+04      41      55 ..     133     146 ..     125     161 .. 0.51

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.3e-13
      TBCC_N  32 dsFlkaFteekaaieellesve.esadksklkqkldeitaeiqeLqkllaessmfLpsYdlrsaqealskLkesleeareellPk 115
                 ++F ++F +++a+++el+ ++e  s+ + ++++  d i a i++Lq  ++++  f psYd +++ ++++ L+++l+e+ +++ Pk
  CCE27111.1   5 QKFYRHFLDSSAELQELIGQLEsVSSVAGERQAATDHILAGINKLQHEVSDAAEFTPSYDRKQYSDSIKGLQDKLNETLAKITPK 89 
                 789*******************888999999*****************************************************8 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.2
      TBCC_N  41 ekaaieellesvees 55 
                  ++aie+  ++v+ +
  CCE27111.1 133 DRKAIETDDDKVS-D 146
                 3344444444444.3 PP

>> F_actin_bind  F-actin binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.42   1.9e+03      58      81 ..       3      30 ..       1      41 [. 0.63
   2 ?   13.6   0.0   1.2e-05     0.053       4      65 ..      38      95 ..      35     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.42
  F_actin_bind 58 phakF..aFrellsrLesqsreLr..sa 81
                  p++kF  +F +  + L+    +L   s+
    CCE27111.1  3 PKQKFyrHFLDSSAELQELIGQLEsvSS 30
                  6677766788888888888888874322 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.2e-05
  F_actin_bind  4 skesiLelvelleaalsnlkesvsssqesaqllqlldkvenlhssCsgyvdsipphakFaFr 65
                  + ++iL+ ++ l+ ++s ++e ++s        q +d ++ l+++ ++   +i p+++F+F+
    CCE27111.1 38 ATDHILAGINKLQHEVSDAAEFTPSYD----RKQYSDSIKGLQDKLNETLAKITPKSRFQFK 95
                  6789****************9988877....568***************************8 PP

>> LRR_RI_capping  Capping Ribonuclease inhibitor Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00011      0.51       8      19 ..     334     345 ..     333     346 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
  LRR_RI_capping   8 EeLSdsRWtELL 19 
                     E LSds WtEL+
      CCE27111.1 334 EVLSDSVWTELV 345
                     67*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2743.09
//
Query:       CCE27112.1  [L=864]
Description: related to N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein gpi1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-76  254.8   6.9    1.1e-75  253.8   6.9    1.5  1  Gpi1      N-acetylglucosaminyl transferase component (Gpi1)
    9.8e-25   86.6   4.7    2.1e-24   85.5   4.7    1.6  1  UPF0203   Uncharacterised protein family (UPF0203)
     0.0026   17.1   1.5     0.0033   16.8   0.3    1.7  2  7tm_1     7 transmembrane receptor (rhodopsin family)
  ------ inclusion threshold ------
      0.018   15.4   0.8      0.037   14.4   0.8    1.5  1  COX17     Cytochrome C oxidase copper chaperone (COX17)
       0.22   11.6   4.6       0.51   10.4   0.2    2.5  2  Cmc1      Cytochrome c oxidase biogenesis protein Cmc1 like


Domain annotation for each model (and alignments):
>> Gpi1  N-acetylglucosaminyl transferase component (Gpi1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.8   6.9   3.1e-79   1.1e-75       1     187 []     494     680 ..     494     680 .. 1.00

  Alignments for each domain:
  == domain 1  score: 253.8 bits;  conditional E-value: 3.1e-79
        Gpi1   1 fnslwlilnDvllGilllslllenaeviaelieklleellvdslekllewlsgnPaGlKLNkeLasflgklflwviklwksllesllsllelllkllal 99 
                 +nslwl++nDv++G++l+s+++e+a+++a  i +ll+ ++v+ le++++wl+g+PaGlKLN+eLa flg+lflwvi++w+s++ +l+s+l++++++++l
  CCE27112.1 494 YNSLWLVANDVIIGMALGSYIVEHADWVAMRIGDLLRIYTVEALETSIKWLMGWPAGLKLNSELADFLGNLFLWVIDYWSSCVGTLHSILPKVVWFIGL 592
                 7************************************************************************************************** PP

        Gpi1 100 lsllGltfalsllsDllslltlhiylfyvlsariyrlqlevlksLfqlfrGkkyNvLrnrvDsldyeldqlllGtllFtvlvfLlPTv 187
                 +s++G+++ ++l+sDlls ltlhiy+fy++sariy++ql++l+sLf+lfrGkk+NvLrnr+Ds+dy+ldqll+Gt+lFt+l+fLlPTv
  CCE27112.1 593 ASFAGASMPVALCSDLLSALTLHIYSFYLASARIYHWQLTILQSLFHLFRGKKHNVLRNRIDSCDYDLDQLLVGTILFTLLFFLLPTV 680
                 ***************************************************************************************8 PP

>> UPF0203  Uncharacterised protein family (UPF0203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   4.7   5.8e-28   2.1e-24       1      68 [.       3      71 ..       3      72 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 5.8e-28
     UPF0203  1 sslspeCtelKeaYdeCFnkWfsekflkgkek.eeeCeklwkkYreClkkalkekgleklleeareeap 68
                +sl+peC+++Ke Yd+CF kW+sek+lkg ek ++eC++l+k+Y++Cl  alkekg++kl+eeare+++
  CCE27112.1  3 NSLAPECNDAKELYDTCFLKWYSEKYLKGTEKnNDECAALFKDYQKCLVVALKEKGIDKLIEEAREDNK 71
                69**************************9999899*******************************985 PP

>> 7tm_1  7 transmembrane receptor (rhodopsin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   9.3e-07    0.0033     107     175 ..     626     694 ..     618     702 .. 0.86
   2 ?   -3.6   0.0       1.5   5.5e+03     134     177 ..     744     783 ..     733     786 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.3e-07
                 HHHHHHHHHHHHHHHHHCEECCCTTTT.CCEEECSSSTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       7tm_1 107 llvWvlslllsvpllvletvetnaedt.tkdCqittleesvyiifsavlsfilPllvivilyarifrtvl 175
                 +  W l +l s+++l+ +++ +n  ++  ++C+ + ++  v +i++++l f+lP++v+++l++ i+r + 
  CCE27112.1 626 IYHWQLTILQSLFHLFRGKK-HNVLRNrIDSCDYDLDQLLVGTILFTLLFFLLPTVVVFYLNFAIARMII 694
                 56799**********77666.555555599********9999***********************99875 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.5
                 CCEEECSSSTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       7tm_1 134 tkdCqittleesvyiifsavlsfilPllvivilyarifrtvlkt 177
                  ++C+ +  ++s++ + s+ lsf      ++  y+ ++++++k+
  CCE27112.1 744 DSTCTNQETPTSIIYLKSIPLSF----GAMFHQYFLMAHRIRKH 783
                 45687777774444444444444....45666666666666665 PP

>> COX17  Cytochrome C oxidase copper chaperone (COX17)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.8     1e-05     0.037       9      41 ..       9      50 ..       7      53 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
       COX17  9 CpetKkaRDeCiles.........gaeee..kCkelieahkaCm 41
                C + K+  D C+l+          ++  +  +C+ l + +++C+
  CCE27112.1  9 CNDAKELYDTCFLKWysekylkgtEK--NndECAALFKDYQKCL 50
                *************9866777774322..256************8 PP

>> Cmc1  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00014      0.51      31      60 ..       5      34 ..       2      37 .. 0.88
   2 ?    3.3   0.9     0.023        83       7      23 ..      33      49 ..      30      54 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
        Cmc1 31 vvgkCneekeamkkClkeyrtderlkdaek 60
                 +++Cn++ke  + C  +++ +++lk  ek
  CCE27112.1  5 LAPECNDAKELYDTCFLKWYSEKYLKGTEK 34
                6789********************977666 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.023
        Cmc1  7 kkarkeCaelikalaeC 23
                +k ++eCa+l k++++C
  CCE27112.1 33 EKNNDECAALFKDYQKC 49
                6788************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6211.94
//
Query:       CCE27113.1  [L=395]
Description: uncharacterized protein CPUR_00585 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1280  (0.0713927); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 2781.09
//
Query:       CCE27114.1  [L=341]
Description: uncharacterized protein CPUR_00586 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-63  214.5   0.0    2.7e-63  214.1   0.0    1.1  1  Aldose_epim  Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.1   0.0   1.5e-67   2.7e-63      14     301 .]       7     337 ..       5     337 .. 0.94

  Alignments for each domain:
  == domain 1  score: 214.1 bits;  conditional E-value: 1.5e-67
                  EECTCTTEEEEEEETT.STEESB-B-STHHHHHHSC..CSSCEECSS-SEEETTEEE.ETTEEEECCCCBTTTCEETBSGGG...SB-EEEEEEE... CS
  Aldose_epim  14 kislyGAtllslkvpdkeqrevllgsddaeeylkds..yfgatlgrvanRianGeFe.ldGkpyqlpqneegknplHGgarg...reWeveevke... 102
                  ++ ++GA ++s+kv++   ++++lg++++++y +++  +fg t+grvanRi++++   ++Gk y l  n+ g+n+lHGg+rg   r W+ +   +   
   CCE27114.1   7 TFLRLGAIIQSIKVNN---TNIVLGFPNEQDYAQHNspHFGETIGRVANRIRGARLNdVNGKSYALVAND-GPNTLHGGIRGwgkRMWTGPMLISdre 100
                  7889***********9...8**********************************99559***********.**************9999887777777 PP

                  .........TTEEEEEEEEEEETCHCSTSEEEEEEEEE....EETTEE....EEEEEEEEESS..S-EEEEEEEEEEEETSSC.TCTGGEEEEEEEEE CS
  Aldose_epim 103 .........ddgvtvslvlkpdgeegypgdlevrvtyt....Lnedne....lkieyeatndg..kptpfnltnHtYFnlsge.sidshelqieadey 180
                            ++v++s ++ +dg+eg+pg++e++vtyt    ++e+++    l ieyea+  +  ++tp+n+tnH+YFnlsg+ ++d++ ++++++ +
   CCE27114.1 101 vpgvanlqdSETVVFSWIS-EDGDEGFPGKVEAQVTYTtgiqIDENGKkiviLGIEYEAELVDgaEETPINMTNHSYFNLSGDaTVDGTVVKLSTNAQ 197
                  899999*988899999999.*****************766668999999************999********************************** PP

                  EEECTTSGEEEEEEECTTCCCCCCSSEEHCSSETEEEEEEEESSC............SEEEEEETTTTEEEEEEEETTSSEEEEEECTTTT....... CS
  Aldose_epim 181 levdeeliptgelkdvkgtpfdfrqpkaigedlkglDhayllksk............lkaviidpdkksgiklevsttepalvvytgnflk....... 259
                  l+ de++iptg  ++   +++d+++p +++ + +++D++++  +             l++  ++ ++k+gi+lev++tep++++ytg+f +       
   CCE27114.1 198 LPNDEQSIPTGPPVP--YPDLDTTKPFTLTATEPKIDRCFTKVTDpasvpidtrdqpLTLDLTASHPKTGIHLEVWSTEPSYQFYTGDFTNvpavdgv 293
                  ***********5555..556777*********99********9999********999999999*********************************** PP

                  .SEECCEEESSECTCETCCCECHHHT.-EEEHTTTEEEEEEEEE CS
  Aldose_epim 260 .kylsreglaletqmlpdepnhpefp.sivlkpGesysaetsys 301
                       r+++++e+ + ++++n pe++  +++k+Ge++ ++++y+
   CCE27114.1 294 sAKGPRSAFCCEPGRWINAVNVPEWKsMVMVKKGEKFGSRIVYK 337
                  *889**********************999**********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2385.52
//
Query:       CCE27115.1  [L=245]
Description: uncharacterized protein CPUR_00587 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1819.91
//
Query:       CCE27116.1  [L=168]
Description: uncharacterized protein CPUR_00588 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-33  114.2   0.0    2.7e-33  113.8   0.0    1.3  1  DUF3767       Protein of unknown function (DUF3767)
  ------ inclusion threshold ------
      0.022   14.9   0.1      0.043   14.0   0.1    1.6  1  Flavodoxin_1  Flavodoxin
       0.12   12.3   0.3       0.19   11.6   0.3    1.3  1  CI-B14_5a     NADH:ubiquinone oxidoreductase subunit B14.5a (


Domain annotation for each model (and alignments):
>> DUF3767  Protein of unknown function (DUF3767)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   4.6e-37   2.7e-33       2      99 ..      44     141 ..      43     159 .. 0.96

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 4.6e-37
     DUF3767   2 aslsdavktisledfsklvsiPCaRdslltGigagavvGglrfvlkknvakaaNWavgafllgsivayeqCrarrrkekekmkravevvkekkakkek 99 
                 +sls++v +++++df++l+++PCaR+++ltGi++ga++Gglrfvlk+++ kaaN+avg+f+lgs+++ye+C++ rr e+++++r++e+v+ ++++ +k
  CCE27116.1  44 PSLSEVVGSLKKDDFTDLYKTPCARQGTLTGIAVGAGAGGLRFVLKADAVKAANMAVGVFVLGSVLSYEYCQYLRRVERKNVQRTIEIVNGRSRELAK 141
                 689**************************************************************************************999887665 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   7.1e-06     0.043      79     123 ..      83     133 ..      26     161 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.1e-06
                   H......GCCSTTTTEEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEEES CS
  Flavodoxin_1  79 e......ledgdlsgvrfavfglGdsayenFcaagkkldekleelGaerll 123
                           ++++  ++ + vf lG+   +++c+  ++++ k  ++  e++ 
    CCE27116.1  83 GlrfvlkADAVKAANMAVGVFVLGSVLSYEYCQYLRRVERKNVQRTIEIVN 133
                   0444444788999**************************998888888776 PP

>> CI-B14_5a  NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   3.2e-05      0.19      46      85 ..     113     152 ..     104     162 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.2e-05
   CI-B14_5a  46 anyYytRDaRRevappivvvssqkkllaekssseaekaaa 85 
                   +Y+ R +R++v+ +i++v+ ++++la+k+++e+e+++ 
  CCE27116.1 113 YCQYLRRVERKNVQRTIEIVNGRSRELAKKAAEEKEAQSR 152
                 5689********************9999866666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1197  (0.0667633); expected 358.6 (0.02)
Passed bias filter:                      759  (0.0423336); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1319.04
//
Query:       CCE27117.1  [L=2224]
Description: probable DNA polymerase epsilon, calytic chain POL2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.1e-152  506.1   0.0   7.7e-152  505.5   0.0    1.3  1  DUF1744         Domain of unknown function (DUF1744)
      4e-78  262.9   0.1    6.2e-78  262.3   0.1    1.3  1  DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
    6.5e-14   51.5   0.0    1.3e-10   40.7   0.0    3.6  3  DNA_pol_B       DNA polymerase family B
    1.1e-08   35.0   0.1    3.1e-08   33.6   0.1    1.7  1  DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the ex
      8e-06   25.9   0.0      3e-05   24.1   0.0    2.0  1  RNase_H_2       RNase_H superfamily


Domain annotation for each model (and alignments):
>> DUF1744  Domain of unknown function (DUF1744)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.5   0.0  2.1e-155  7.7e-152       2     400 ..    1527    1911 ..    1526    1912 .. 0.97

  Alignments for each domain:
  == domain 1  score: 505.5 bits;  conditional E-value: 2.1e-155
     DUF1744    2 eklykeelek..keekeekkeelieypeklkfeveyvkdekkalkalsralkklkeeksgptllvlqspkelkkleskipalsefPvvklpsnkaes 96  
                   ++y+e+l+k  +e++ +++++++ y+ek+ f++++v++++ka+ ++s+ +kk+++++++p ++++qs+++ k l +++p+l efPv+ l++++a+s
  CCE27117.1 1527 TRMYSEMLAKraQEAAGTNWQDCFAYQEKIGFKITQVSTRRKAHLEISDVVKKMRKDETRPQIMIIQSSQR-KSLVHDVPVLGEFPVLPLKYDAADS 1622
                  689*****9988899999****************************************************9.************************* PP

     DUF1744   97 slpalgWqsvvakrlvehylklgswlaelielaryadvPlgnlesddllfliDiffaRrLkksnvvLWwsesprPDlGGlekDdklealslleeles 193 
                  slp+lgWq vva+rl+ hyl lgsw+ +l++lary+dvPl+nle++d++fliDi++aRrL+ + vvLWws++prPD++G+ekD+    l +l+++++
  CCE27117.1 1623 SLPPLGWQGVVARRLLGHYLGLGSWILHLTALARYGDVPLCNLEREDPRFLIDIAYARRLQTNGVVLWWSAGPRPDHAGYEKDN---LLGALDTVKM 1716
                  ***********************************************************************************7...77889***** PP

     DUF1744  194 peinnpgaYssvcveleirnLavntilqsalinelEgssssvafddasseeldeyekgeaessssldesalssaafrvLrslvkswlddalkgnkla 290 
                  p++nnpg+Yssvc+++++rnLa+ntil+s+linelEg++s ++f+++           + +s++  ++sa+++a + vLr++vk+w+++a+kg+++a
  CCE27117.1 1717 PNVNNPGTYSSVCIDMDVRNLAINTILTSSLINELEGAES-ISFNPT-----------ADGSDTLASDSAFANAGVLVLREMVKAWWAEACKGSTMA 1801
                  *************************************975.666663...........345678899****************************** PP

     DUF1744  291 dllvqhlvrWvespsslLyDpaLrrlvqnlmkKvflqLlaefkrlgskvvyAdfnkillkTsKksvenayaYveyilkairskelFkflelkikkyW 387 
                  d+lvqhlvrWve+p+s++yD aL+++vq++++K+f+qL+a+f+r+gs+vv+A+ n+++l+T+K +v+na+aY++yi+k+i+sk+lF+f++l++k+yW
  CCE27117.1 1802 DVLVQHLVRWVENPDSFMYDGALHYYVQMMSRKAFQQLMADFRRVGSQVVFANSNRLILQTTKAEVGNAFAYSQYIIKSIKSKPLFHFIDLEVKEYW 1898
                  ************************************************************************************************* PP

     DUF1744  388 dlLlwmDeaNygG 400 
                  d+L+w+De+NygG
  CCE27117.1 1899 DYLVWYDEFNYGG 1911
                  ************* PP

>> DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.3   0.1   1.7e-81   6.2e-78       2     337 .]      97     439 ..      96     439 .. 0.98

  Alignments for each domain:
  == domain 1  score: 262.3 bits;  conditional E-value: 1.7e-81
                     ECTTSEEEEEEEE---EEEEEESSCGGHHHHHHHHHHHCC.TTCCCEEEEEEEECCCCEECCTSSCCHHCEEEEEESSTCHHHHHHHHHHH.... CS
  DNA_pol_B_exo1   2 teegksvcvnvfgfkpyfYceapdgkeleevkeelkelye.elskkvtkivkvelvlkkslygyekkpvpylkvsvsnpnelkkirkelsp.... 91 
                     +e+++s ++ + +++pyf++++++g+e  ev+e+ k++ + +  k+v++++ ++l ++++l+gy ++   +l++ ++n n+l+ +r+ ++p    
      CCE27117.1  97 IEQDGSTFKATIEYQPYFLIAVKKGHES-EVEEWAKRVPGdGVVKSVRRVELEDLSMPNHLLGYRRT---FLELKFANINDLMAARRDIMPvaek 187
                     7899***********************8.*******996515677788*******************...************************* PP

                     .........................................CCCCCCCCSSS--HHHHHHHHCTS-TTCEEEEETEEEEGCC--C-.SEEEEEET CS
  DNA_pol_B_exo1  92 .........................................leeivdvyeydvdylerflidnkivgfgwysvkkylvraegkisncdveidcdv 145
                                                              ++ ivd++eydv+y++r++id +i++++wy v+         +++  ++i+ ++
      CCE27117.1 188 nkknmnamdayaevvtangnfdlfdddlrdnersnasfleaSDYIVDIREYDVPYHVRVMIDLDIRVGSWYYVE---------VKHGVTKISANK 273
                     *****************************************99*******************************.........************ PP

                     TTSCEETTTCCS-EEEEEEEEEETEETTSEETTTT..--EEEEEEEECCTC.SS.SEEEEEEECCCTSS----EE--SSTCSTTE.EEEEESSHH CS
  DNA_pol_B_exo1 146 ddliakpkesepplrvlsFDIeckskkgkfpdaensedpiiqIscvldglgekepearklftlrecaseeeedfeltpkpeypgv.kvlefdsEk 239
                     d+  +      ++++vl+FDIe+++ ++kfpda    d++++Is+++dg+g       +l+t+re+  e++ df++tpkpeypg+ +++++++Ek
      CCE27117.1 274 DRSLP------ADPVVLAFDIETTKPPLKFPDAAV--DQVMMISYMIDGQG-------FLITNREIIAEDIGDFDYTPKPEYPGPfMIFNEPNEK 353
                     *****......************************..**************.......************************************* PP

                     HHHHHHHHHHHHH--SEEEESSTTTTHHHHHHHHHHHCCTCCHCG.SCCSCTCEECCCCESEEEEEECEEEETTSEEEEHHHHHHHHSSSS..G- CS
  DNA_pol_B_exo1 240 elLqaflefikqydPdvitgYNidnFDlpYilnRakelykvklsklgrlnkggrskvseigfskqarekvkisgrihlDlyrvvkrklklp..sY 332
                     ++L++f+ +ik+ +P+vi +YN+d+FD+p++++Ra+               +g+ + +eig +k++++++k+++ +h+D++++v+r+++lp  s 
      CCE27117.1 354 AVLERFFLHIKEARPTVIATYNGDFFDWPFVETRAS--------------VNGIDMYQEIGWKKDSADQYKCNYGVHMDCFHWVNRDSYLPqgSR 434
                     ************************************..............9******************************************** PP

                     SHHHH CS
  DNA_pol_B_exo1 333 kLnav 337
                      L+av
      CCE27117.1 435 GLKAV 439
                     **998 PP

>> DNA_pol_B  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.1   3.7e+02       6      59 ..     504     565 ..     502     570 .. 0.73
   2 !    4.6   0.0     0.003        11      61      89 ..     633     661 ..     622     698 .. 0.87
   3 !   40.7   0.0   3.5e-14   1.3e-10     147     456 ..     808    1154 ..     767    1156 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.1
                 HHHS-HHHHHHHHHHHHHHHTTBE-B-----.--SS...........-S----BE----EEESS CS
   DNA_pol_B   6 vledgqqirveslLlrlakeegfilpdrtekkgkeee..........gYqGatVlePkkglydk 59 
                 +l +g  +  e+lL+ +a ++g++lp+++++ +  e+          +Y G+ V + + g++  
  CCE27117.1 504 TLRKGTGTLCEMLLMVQAYQRGIVLPNKHQSPK--EAfweghlleseTYVGGHVESIEAGVFRA 565
                 67889999999***************6555422..22356777777558888887777776665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.003
                 EEEEEETTHHHHHHHHTT-STTTCE-HCC CS
   DNA_pol_B  61 vlvlDFaSLYPsiiqahNlcyttlvasee 89 
                 +  lD aS+YP+i+  + l +  +v + +
  CCE27117.1 633 IYHLDVASMYPNIMTTNRLQPDSMVSESD 661
                 6679************9999999998776 PP

  == domain 3  score: 40.7 bits;  conditional E-value: 3.5e-14
                  HHHHHHHHHHHHHHHHHHHHHHHHTSTTSTT--HHHHHHHHHHHHHHHHHHHHHHHHT......SSG.........GGT-SS..........T-EEE CS
   DNA_pol_B  147 fekalldkqQlalKvtaNsvYGftGvansrlpclalAasvTtiGRemLektkelvekk...aellsk.........llalpeea....eee.klkvi 226 
                  +   ++d+ Qla Kv+ Ns+YG++  + sr  ++++A     +G ++++ +++lve+        +           + +pe++    ++  k+ + 
  CCE27117.1  808 KLTIVYDSLQLAHKVILNSFYGYVMRKGSRWHSMEMAGVTCLTGATIIQLARQLVERLgrpL---ELdtdgiwcmlPATFPENFsfklKNGkKMAIS 901 
                  45779***************************************************874432...32234654443344444443333233477777 PP

                  EEBSSEEEEE-...S-SSHHHHHHHHHHHHHHHHT.TSTTT--EEEEEEEEEEEEEE........TTEEEEEEEEESSTTSEEEEESSGGGSTTS-H CS
   DNA_pol_B  227 YGDTDSvfiel...kvkdveellkigkelaeevseklfkkplklefekvykkllLis........KKkYaglkvektskanklliKGvdlvRrdnck 312 
                  Y     v+++    +  + ++  ++ +    + ++    + +  e++  y  ++L +        KK+Ya +  +     +  + KG ++ Rr+  k
  CCE27117.1  902 YP---CVMLNHlvhDKFTNHQYQTLVDPKTFKYET-HSDNSIFFEVDGPYRAMVLPTskeedknlKKRYAVFNDD----GSLAELKGFEVKRRGELK 990 
                  73...677776333234455555666555555555.45667**************65455555558999877666....33479************* PP

                  HHHHHHHHHHHHHSSS....S-HHHHHHHHHHHHHHHHHHHHTT-S.....-GGGG-E.EEEESS.CCCSSGCCSHHHHHHHHHHHHC.SS-.--TT CS
   DNA_pol_B  313 lvkevikkvlelllkdeteersleeglealksilkdvleeleenkv.....plekfvl.skelskepenyksknlphlevakrlkkrn.eea.pevg 401 
                  l+k   ++v +  l+     ++l ++  a+ ++ ++ l+ l+++ +     +l +++  ++++sk+ e+y s++   ++ akrl+    e+     g
  CCE27117.1  991 LIKIFQQQVFKFFLEG----EDLAQCYGAVAKVANRWLDVLHNKGTtladeELMELISeNRSMSKTLEEYGSQKSTSITTAKRLADFLgEQMvKDKG 1083
                  ****************....6666666666666666666665554411111344444326789*******99999**********998444423456 PP

                  CEEEEEEBETSS......................SS-GGGTEEEHHHHHHCCSEB-HHHHHHTTHHHHHHHH CS
   DNA_pol_B  402 drisYvivekkkev.................kkknllaseraedpeyvleknlpidieyYlsqllkevarll 456 
                     +++i++  +++                 +k+  l++ ++e+p   ++ +  +d +yYl++l + + +l+
  CCE27117.1 1084 LNCKFIICSRPRNApvteravpvaifsadepIKRAYLKKWLKEEPAD-TDPRALLDWDYYLERLGSVIQKLI 1154
                  6899****999887999999999976666543344444444444433.335677999999999999998887 PP

>> DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   8.6e-12   3.1e-08      34     175 ..     349     487 ..     345     488 .. 0.75

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 8.6e-12
  DNA_pol_B_exo2  34 essekelikkffegvekkkpqlV.sfngrgfDlpvleyralkhgvsapkyfdegdedrekkwnnylsrystrhlDLmdlls..eygaranakLd. 124
                     e +ek+++++ff ++++++p+++ ++ng  fD p +e ra ++g+ + + + +++    +  ++y   y   h+D    +   +y ++ +  L+ 
      CCE27117.1 349 EPNEKAVLERFFLHIKEARPTVIaTYNGDFFDWPFVETRASVNGIDMYQEIGWKK----DSADQYKCNYG-VHMDCFHWVNrdSYLPQGSRGLKa 438
                     4579****************97758*******************98766555554....34444555553.366666665422465555555551 PP

  DNA_pol_B_exo2 125 .elakllglPGKlgvdGskVaelyqegklkeireYcetDvlnTYlvylrlel 175
                      ++akl   P  l+    + ++ y++++ ++++eY  +D++ TY +y+++++
      CCE27117.1 439 vTVAKLGYDPDELD---PELMTPYASERPQTLAEYSVSDAVATYYLYMKYVH 487
                     15667666676665...57999***************************975 PP

>> RNase_H_2  RNase_H superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   8.2e-09     3e-05      39     119 ..     348     449 ..     339     485 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 8.2e-09
   RNase_H_2  39 eepeeekailelflellekk.kalvtfngksFDvpflkrlf.......kkyklde..............eefrhiDLlkelrkkkl....esysLksve 111
                 +ep+e++ ++++fl++ e + + + t+ng  FD+pf+++++             +              +   h+D ++++++  +    ++ +Lk+v 
  CCE27117.1 348 NEPNEKAVLERFFLHIKEARpTVIATYNGDFFDWPFVETRAsvngidmY-----QeigwkkdsadqykcNYGVHMDCFHWVNRDSYlpqgSR-GLKAVT 440
                 6788999999999888887736689****************88554440.....245556576666665667*********99999999655.999987 PP

   RNase_H_2 112 ke.lgierr 119
                  + lg++ +
  CCE27117.1 441 VAkLGYDPD 449
                 666777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.11u 0.29s 00:00:01.40 Elapsed: 00:00:00.47
# Mc/sec: 14262.44
//
Query:       CCE27118.1  [L=685]
Description: uncharacterized protein CPUR_00590 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-09   37.4   0.0    2.6e-09   36.6   0.0    1.4  1  CUE       CUE domain


Domain annotation for each model (and alignments):
>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.4e-13   2.6e-09       1      40 [.     347     386 ..     347     388 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.4e-13
                 CHHHHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHH CS
         CUE   1 reqmletLkemFPdldeevIravLrasngnvEatinaLLe 40 
                 r++++ +++++FPdl+  +++++L +++ +vE+++ +LL 
  CCE27118.1 347 RMSQITQVQDLFPDLGAAFVSKCLDEYGDDVEQVVANLLG 386
                 579***********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4875.32
//
Query:       CCE27119.1  [L=116]
Description: probable 40s ribosomal protein s20 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-25   88.9   0.3    2.4e-25   88.6   0.3    1.1  1  Ribosomal_S10  Ribosomal protein S10p/S20e
      0.003   16.3   0.1     0.0035   16.0   0.1    1.1  1  Fibrillarin_2  Fibrillarin-like archaeal protein


Domain annotation for each model (and alignments):
>> Ribosomal_S10  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.3   2.7e-29   2.4e-25       1      98 []      20     113 ..      20     113 .. 0.95

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 2.7e-29
                    EEEEEESSHHHHHHHHHHHHHHTTSSS-EE---EEEEEEEEEEEEE--SS--.S--EEEEEEEEEEEEEEEE.E-HHHHHHHS-...S---SS-EE CS
  Ribosomal_S10   1 rirlkSydsklLekavkkivraakelgikvkgpvplPtkrkrvtvlksphvd.kksreqfeirthkRlidisdatketidtllkllqlnlpegVsv 95 
                    ri+l+S++ + Lek++++i++  k+++++vkgpv+lPt+++++t++k+p+++ +k+++ +e+r+hkRlid++ a+ e++++++     n+ +gV+v
     CCE27119.1  20 RITLSSRKVNILEKVCTEILERSKSKDLRVKGPVRLPTQTLKITTRKTPCGEgSKTWDCYEMRIHKRLIDLH-APTEVVKQIIV----NIDAGVEV 110
                    89*********************************************************************6.77778888876....888***** PP

                    EEE CS
  Ribosomal_S10  96 evk 98 
                    ev+
     CCE27119.1 111 EVT 113
                    996 PP

>> Fibrillarin_2  Fibrillarin-like archaeal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   3.9e-07    0.0035     106     189 ..      28     113 ..      17     115 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.9e-07
  Fibrillarin_2 106 iellkkvrelvevPldldhfGkyGpmrfPke...ivgceGecyneGppfkecPrdrihkrlldkekeeledkeeWvklsssvavnlt 189
                    +++l+kv   +        +   Gp+r+P +   i++ +  c  eG+   +c   rihkrl+d    +   k+  v++ + v v++t
     CCE27119.1  28 VNILEKVCTEILERSKSKDLRVKGPVRLPTQtlkITTRKTPC-GEGSKTWDCYEMRIHKRLIDLHAPTEVVKQIIVNIDAGVEVEVT 113
                    55555555444444444556678******9722245555555.6899999*************998888888888888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 832.92
//
Query:       CCE27120.1  [L=519]
Description: related to NUP42-nuclear pore protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.068   12.9   0.7       0.32   10.7   0.1    2.2  2  DUF4524   Domain of unknown function (DUF4524)


Domain annotation for each model (and alignments):
>> DUF4524  Domain of unknown function (DUF4524)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   1.8e-05      0.32      42      80 ..      94     132 ..      76     142 .. 0.81
   2 ?   -0.5   0.1     0.053   9.6e+02      36      87 ..     372     423 ..     357     436 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.8e-05
     DUF4524  42 qegervrQrtrFaisrlrkkvaaalefRNafaerPylpe 80 
                 q  + ++Q t+Fa+ ++r+ v+ +l+  N++ +r  ++ 
  CCE27120.1  94 QLYQNAQQQTQFALKNTRDAVRFILDAENQHPNRIDICR 132
                 445789*************************98877765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.053
     DUF4524  36 asahplqegervrQrtrFaisrlrkkvaaalefRNafaerPylpeelleser 87 
                 ++++pl ++   + +  Fa+s  ++  ++  +++ +  + Py p+++ e+ +
  CCE27120.1 372 NTSNPLGQPGPQQRMNTFATSGQNQAPNTNTNTKPNTKNGPYHPDSVKEHPT 423
                 56789999999999999***99999999999999999999999966655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3401.83
//
Query:       CCE27121.1  [L=498]
Description: related to benzoate 4-monooxygenase cytochrome P450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-58  198.6   0.0    2.1e-58  198.2   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.2   0.0   1.2e-62   2.1e-58      19     444 ..      15     448 ..       7     462 .. 0.84

  Alignments for each domain:
  == domain 1  score: 198.2 bits;  conditional E-value: 1.2e-62
                 TCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHH CS
        p450  19 keelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.slee 116
                 k+ +h  + +++++yg+++r+ ++s +    +++++ + +++ +++  ++++++a+++        +   + + e + + Rr+l +++  + ++ ++  
  CCE27121.1  15 KGDRHLEFWRMHQRYGKVVRFGPNSLS---FNSSQSLRDIYGFRSNVRKAEFYDAFVHP-----AANTHNTRDKEVHARKRRVLSQAFSES-AMkEMQR 104
                 6788999************99877654...56788999999888644444444444444.....4444444555899999***********.7779*** PP

                 HHHHHHHHHHHHHHCCCCHCS........EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTC.CSCHH CS
        p450 117 lveeeaedlveklrkkagess........elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp.llky.lptkl 205
                 ++   ++ ++e++    g s+          +++++ ++ a+d++g++ Fg+ f +le++++  ++++ve+      ++++ ++ ++p + k  +   l
  CCE27121.1 105 YILGNVRTFCEQVGLADGGSGgdakgwtqPRNMSDWCNYLAMDILGDLSFGKAFHMLEKPDNRFALELVEAA-----TTRHLICGTMPvVDKLkIDRFL 198
                 **************9999999999****99*******************************97777777777.....5666666666642222023334 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
        p450 206 lrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEid 304
                 + +l + + ++  + +  ++er +  +++  +rrdf  +ll+a++ + g+  +s+ el  +   l++aG+dTts++++ ++++L++n ++ e++  E++
  CCE27121.1 199 FPRLAAGRARYMAYSKGQLTERTKLGEET--DRRDFFYYLLKARDPETGH-GFSMPELWGESNLLIIAGSDTTSTAMASTIFYLVRNRHAWERVSREVR 294
                 55555555666677777777777766666..9***********9555555.9*********************************************** PP

                 HHCCTTT.T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETT.EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS....... CS
        p450 305 evlgdkr.eptyddlqklpyldavikEtLRlhpvvplllpRevtk.dvvirg.ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg....... 393
                   ++d++  ++   l + +yl+a+i E++Rl+p v   lpRe++   ++++g +++p+Gt+v +++y++h+++++fp+P ++ peR+l+ ++       
  CCE27121.1 295 AKFRDVEeIVHGPSLGSCTYLRACIDEAMRLSPSVGGILPREILAgGMTVDGeHVLPQGTVVGTPHYTIHHNEDYFPEPYSYIPERWLRGEVnplsgsi 393
                 ***99993556689**********************9********99**************************************************** PP

                 ....CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGG CS
        p450 394 ....nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpp 444
                     +    + af PF+ GpR CiG++lA+ e+  +la+++  +++   +++ + 
  CCE27121.1 394 ttddDVVLAQSAFCPFSVGPRGCIGKGLAYAEMTTMLARTIYLYDMRRASGGVVD 448
                 *9995557899*****************************999988766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3565.70
//
Query:       CCE27122.1  [L=1002]
Description: related to CWH43-putative sensor/transporter protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-40  137.5   9.0    4.7e-40  137.5   9.0    3.9  3  Frag1          Frag1/DRAM/Sfk1 family
     0.0018   18.0  10.8     0.0018   18.0  10.8    4.0  4  FtsK_4TM       4TM region of DNA translocase FtsK/SpoIIIE
  ------ inclusion threshold ------
      0.038   13.5   0.0      0.073   12.6   0.0    1.4  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Frag1  Frag1/DRAM/Sfk1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   9.0   7.8e-44   4.7e-40       3     218 ..      63     270 ..      61     271 .. 0.97
   2 ?    0.5   0.0      0.06   3.6e+02      78     103 ..     437     480 ..     376     508 .. 0.75
   3 ?   -7.5  10.9         3   1.8e+04     118     147 ..     618     647 ..     539     750 .. 0.52

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 7.8e-44
       Frag1   3 fllpliafilwlgmliamlvcavvqgpvdyvfmh.keqf...lPyISd.igatnpeslffslalnlglflvilvallrfqrlpplatksernlnfaalv 96 
                  ++ ++++++++++++ +l++ v ++++++v+++ ++++   +P++S+ ig+++pe++ff ++++++++++++++ l+++  ++  tk    l  + + 
  CCE27122.1  63 HWVSWAHTVIAYTAFLSALIVGVGLHYHKIVQNEfYGYPqewFPSVSAtIGDRYPERSFFMIFIAITSGPRFALVGLFYLLSRKPGTK----LPGFVAS 157
                 589***********************999*********9*******************************************999999....******* PP

       Frag1  97 lgligalglllvsifstaeyhsvHlvgavvffvfgflyvllqtalyykmgrhyvwnkstisfrlkvvllilavvlailfgvffvrhkkkcgygayslsA 195
                 +g++++l+++++++++++++h++H++ +++++v++++++l ++al+         + +   ++++  ++  ++ +++++++ff++hk +  +gay+++A
  CCE27122.1 158 MGILRTLTCGGWTYITSTDDHDWHDILMISYIVCTLPWTLGCIALS---------PPNPQAIKYRKYIASSFFGTLVPLIYFFIQHKVHRVAGAYTIYA 247
                 *********************************************9.........67788999************************************ PP

       Frag1 196 ifEWllafwfiiffltfsvDFyt 218
                 +fEW l+++ ++f+ ++++DF+t
  CCE27122.1 248 FFEWALILFDVGFDAVTALDFKT 270
                 *********************97 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.06
       Frag1  78 r..................lpplatksernlnfaalvlgligal 103
                                    ++p  +k +  +n a l++g+++al
  CCE27122.1 437 LvglilsstakfawqtnnpIWPIMHKANGGWNLAGLIFGVLAAL 480
                 04444444444444567778999999999999999999999876 PP

  == domain 3  score: -7.5 bits;  conditional E-value: 3
       Frag1 118 svHlvgavvffvfgflyvllqtalyykmgr 147
                 ++   g++++++++++ v++ ++ +   g+
  CCE27122.1 618 TTFGLGFFIYVFLVLFHVWVVAYAFVPGGP 647
                 333334444444444444443333333222 PP

>> FtsK_4TM  4TM region of DNA translocase FtsK/SpoIIIE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.7      0.87   5.2e+03      61     111 ..     335     358 ..     326     374 .. 0.58
   2 ?    0.9   1.1     0.054   3.2e+02      71     124 ..     410     466 ..     381     488 .. 0.67
   3 !   18.0  10.8     3e-07    0.0018      73     162 ..     525     612 ..     499     621 .. 0.75
   4 ?    0.1   0.9     0.095   5.7e+02      60     104 ..     620     666 ..     615     710 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.87
    FtsK_4TM  61 lfGlsawllvvlllawglrllrrkslerrllrllgalllllasaalfalrl 111
                  +Gl++w +++                             + +++++a+ l
  CCE27122.1 335 SLGLVVWYFPLW---------------------------HMGISGYEAFVL 358
                 445555555554...........................444444444433 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.054
    FtsK_4TM  71 vlllawglrllrrkslerr.llrllgall.lllasaalfalrlasled.elpggaGG 124
                 +  l w+++l +++ +++r   +llg+l+ l+l+s+a fa+++++  +  +  + GG
  CCE27122.1 410 MSTLGWVATLHAESVHDARfESKLLGLLVgLILSSTAKFAWQTNNPIWpIMHKANGG 466
                 223334444444443333346677776652666888889999999988433444444 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 3e-07
    FtsK_4TM  73 llawglrllrrkslerrllrllgalllllasaalfalrlasledelpggaGGvlGrllaaalstllgftGatllllvllliglslvlgfs 162
                 +++w+++ +  +   +   +  + +l++++  ++f+++ +sl+  ++ ++ G++G ++ +++s+++g+ Ga+++++ l+++++ l+++ s
  CCE27122.1 525 MILWVWEGFPVR--GPYFSTHGWCTLAAMSAGVFFGIYKPSLAGGWATYTVGAIGAIVLTFFSHWFGYYGALIIAAYLMAVAVPLLTSAS 612
                 344555555544..233444445555555666678************************************************9999877 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.095
    FtsK_4TM  60 slfGlsawllvvlllawg..lrllrrkslerrllrllgalllllasa 104
                 + +G+  +++ vl+ +w+  ++++ + +l r+ + +++ +++ l  a
  CCE27122.1 620 FGLGFFIYVFLVLFHVWVvaYAFVPGGPLVREHTDWIMYTMIGLIGA 666
                 55666666666666666533444444555555555555555555444 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.2e-05     0.073      18      91 ..     748     819 ..     738     874 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
                    HHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH........TTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  18 rsdrladlltaydaDvlgLQEvdddelsriplllal........ggflgasstsptgggggggnggavlsrfpltslfrrtf 91 
                    r+   +dl+++   Dv+gL E d +   +i+ + +         g+++ +     + g+++++ g a+ls+fp+ + + + +
     CCE27122.1 748 RM---RDLIKEMELDVVGLLESDLQR--IIMGNRDStqflaedlGMYVDY-----GPGPNKHTWGAALLSKFPIVESKHHLL 819
                    44...5555555669******55554..7777776688888877333333.....35789**************76655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1002 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 6999.61
//
Query:       CCE27123.1  [L=398]
Description: related to UTP6-U3 snoRNP protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-26   89.7   1.6    2.3e-25   88.5   0.3    2.2  3  U3_assoc_6  U3 small nucleolar RNA-associated protein 6
     0.0017   17.6   2.5     0.0018   17.4   1.7    1.7  1  NRDE-2      NRDE-2, necessary for RNA interference
  ------ inclusion threshold ------
      0.025   15.4   0.0         91    4.3   0.0    4.0  3  TPR_14      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> U3_assoc_6  U3 small nucleolar RNA-associated protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.3   3.8e-29   2.3e-25       1      76 [.      12      87 ..      12      99 .. 0.89
   2 ?   -1.6   0.0      0.48   2.9e+03      35      65 ..     100     130 ..      94     141 .. 0.74
   3 ?   -1.9   0.0       0.6   3.6e+03      46      67 ..     179     200 ..     173     212 .. 0.77

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 3.8e-29
  U3_assoc_6  1 LEqmlpeledleekglFtkeEikeIvkkrrkfEyklqrrgkkkedflkYieyElnLeklrkkRrkrlklkkkksks 76
                LE+++p+l+++eek++Ftk+Ei++Iv+kr+++E+++  +g++++++ +Y+++E++Le+lr+kR+krlk+++ +s +
  CCE27123.1 12 LERSVPQLREWEEKEIFTKDEIRTIVQKRNEHEHRVLCPGNSPSEWSAYAKWEQSLEALRSKRCKRLKIQHLNSAH 87
                8********************************************************************4444433 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.48
  U3_assoc_6  35 klqrrgkkkedflkYieyElnLeklrkkRrk 65 
                 ++++++ + e + +Y +y  ++++  + R+ 
  CCE27123.1 100 SVNKHPGSSELWREYLNYTASVKAAKRWRKT 130
                 5677777788889999999988876666654 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.6
  U3_assoc_6  46 flkYieyElnLeklrkkRrkrl 67 
                 +++Y++ E++ +  + kR++  
  CCE27123.1 179 WVEYAKSEMEWLVKVDKRKEVK 200
                 6789999999888888887655 PP

>> NRDE-2  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.7   3.1e-07    0.0018      26     142 ..      63     145 ..      38     199 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.1e-07
      NRDE-2  26 fQdellsaeeeslskserkalaeiklsilekAleknksnpdserLllelLklgseiwdseklakeWeellkenpnsvkLWreyldfrqsnfasfsvekv 124
                   ++l + +++                             + +rL++++L+ ++    ++++ + +++ ++++p s +LWreyl+++ s       ++ 
  CCE27123.1  63 WEQSLEALRSK-----------------------------RCKRLKIQHLNSAH--AGQARVMSIYDRSVNKHPGSSELWREYLNYTAS---VKAAKRW 127
                 44444333333.............................44445555544443..234455555555555555555555555555555...2233444 PP

      NRDE-2 125 kelyekclrtlsaklegr 142
                 +++++ +lr + + ++  
  CCE27123.1 128 RKTMTGALRMMPHDADLW 145
                 444444444443333332 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.052   3.1e+02      21      41 ..      94     114 ..      85     116 .. 0.87
   2 ?    4.3   0.0     0.015        91       2      43 ..     143     184 ..     139     185 .. 0.91
   3 ?    3.2   0.0     0.035   2.1e+02       6      23 ..     369     386 ..     367     392 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.052
      TPR_14  21 iallrralalaPddaeawlll 41 
                 + +++r + ++P++ e+w+++
  CCE27123.1  94 MSIYDRSVNKHPGSSELWREY 114
                 567999999*********998 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.015
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +++ ++++  +++Gd + A+  + r ++ + +d ++w ++a+
  CCE27123.1 143 DLWIMAGRRSARNGDMASARGFFMRGCRFCNKDCRLWVEYAK 184
                 6899999999******************99999899999986 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.035
      TPR_14   6 alaeallalGdpdeAial 23 
                 a  + +lalGd+de i+ 
  CCE27123.1 369 AWIDGYLALGDLDEGIRE 386
                 667789********9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2821.78
//
Query:       CCE27124.1  [L=1198]
Description: uncharacterized protein CPUR_00596 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-14   54.4   0.0    1.6e-14   54.4   0.0    3.0  3  ARID            ARID/BRIGHT DNA binding domain
     0.0037   17.3  57.5     0.0037   17.3  57.5    3.3  3  TFIIA           Transcription factor IIA, alpha/beta subunit
  ------ inclusion threshold ------
        2.7    6.5  29.0      0.072   11.6  18.8    2.0  2  Macoilin        Macoilin family


Domain annotation for each model (and alignments):
>> ARID  ARID/BRIGHT DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.8       1.1   6.4e+03      10      59 ..     283     340 ..     273     356 .. 0.59
   2 !   54.4   0.0   2.6e-18   1.6e-14       3      90 .]     375     459 ..     373     459 .. 0.92
   3 ?   -5.5   5.2         3   1.8e+04      68      86 ..     563     582 ..     538     615 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
                 HHHHHHTTS.S.SS--......--SSSS-STTHHHHHHTTTSSHHHHTT.CHHHHHHH CS
        ARID  10 kqfhenrgt.l.kkiP......viggkevdlykLyraVikrGGfrkvtqknkWeevaq 59 
                 +q+++++g+ + ++ P      + +++++  y++  + ++  G  +++++ + +++ +
  CCE27124.1 283 QQMLQQQGQlPsGQQPgqrpqsMNDQQKMIAYQMRLQQQQLQGNMQMQAQMQGQNMGR 340
                 4556666664464444444454346777777887777777766555555544455555 PP

  == domain 2  score: 54.4 bits;  conditional E-value: 2.6e-18
                 HHHHHHHHHHHHHTTS.SSS----SSSS-STTHHHHHHTTTSSHHHHTT.CHHHHHHHHHTS-..-.......HHHHHHHHHHHHHHHH CS
        ARID   3 eeFlstLkqfhenrgt.lkkiPviggkevdlykLyraVikrGGfrkvtqknkWeevaqklglpredpeasesvaqalksiYeryLlpyE 90 
                 e+F+++L  +++ +g  l+  P +g ++v+l+ L+++V+++GG+++v + n W+ ++q lglp +    + +v  alk  Yer+L ++E
  CCE27124.1 375 EQFMKNLTALMHAKGLpLDPNPIVGDRPVNLVMLFQVVQSKGGYKSVAAANGWAHICQMLGLPFQ---IP-TVPPALKLTYERNLVKFE 459
                 79**************6577899************************999************843...45.899**************9 PP

  == domain 3  score: -5.5 bits;  conditional E-value: 3
                 ........HHHHHHHHHHHH CS
        ARID  68 p.easesvaqalksiYeryL 86 
                 + +++++++q+l++  ++ L
  CCE27124.1 563 QlQQQQQLQQQLQHQHQQQL 582
                 13445566666666555544 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.0  22.0         3   1.8e+04     119     228 ..      45     153 ..       8     179 .. 0.48
   2 ?   -3.1  36.6         1     6e+03      62     228 ..     189     347 ..     174     388 .. 0.47
   3 !   17.3  57.5   6.2e-07    0.0037      81     282 ..     480     665 ..     406     718 .. 0.44

  Alignments for each domain:
  == domain 1  score: -6.0 bits;  conditional E-value: 3
       TFIIA 119 pakleppvqipagvtlqtasg.qlykvnvqasgaqqiaaqplqqvvqqsqgsaaqs.svaalqaq.sqqaqalaepqqqlekqqqqqqqqqqqqqqqqv 214
                 p + + p+qi a ++ +   g  +y+++ q+++++q+++q+ + +    q+++ q+ sv ++++  +++ +++  p++++++q  ++ + +qqqqq+ +
  CCE27124.1  45 PGQFHNPQQIAAMQNGPMRHGsPAYQTQNQNPNQSQALSQNPNPN----QNPVYQTsSVIPSKRPrPREDSVTGSPGHNASMQPPSRSETPQQQQQNFA 139
                 334445566666555555555545555555555554444444333....44444440444444445667777777777744332224444444444422 PP

       TFIIA 215 qqqqqeesqqaqqa 228
                   q  ++   ++q+
  CCE27124.1 140 AFQPSSSGVMPPQN 153
                 22222222222222 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1
       TFIIA  62 lqlpqslkqalq.asaaaasqapastsqslpslvipagksvqslta...nssaataatfslpakleppvqipagvtlqtasgqlykvnv..qasgaqqi 154
                 + +p+s ++  q  s a++s+ p+++ + +p+      + +q++ta      a++ +t  +  +++p   + ag++ +++ gql +     +++  qq+
  CCE27124.1 189 TASPHSFSPGPQhFSGAQTSPIPSEHGTPQPT------QFLQNMTAgfnPGYAQSPSTSRPSPNTNPMAGVGAGQMMPQQMGQLPQHMSqmNPNIYQQM 281
                 33444444444432333334444444444444......3444555446533335566666666888888888999999999987755334466666666 PP

       TFIIA 155 aaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqe....esqqaqqa 228
                  +q+lqq+   +q +  q+  + +q+ + q++++a ++   +   qqq q ++q+q+ q+q q++     +    +q+
  CCE27124.1 282 QQQMLQQQ---GQLPSGQQPGQRPQSMNDQQKMIAYQMRL-Q---QQQLQGNMQMQA-QMQGQNMGrammP----KQP 347
                 66666666...44444444444444433333333322222.1...122222222222.2222222122221....222 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 6.2e-07
       TFIIA  81 qapastsqslpslvipagksvqsltanssaataatfslpakleppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqqvvqqsqgsaaqssvaalq 179
                    +s+++ +p+ ++++g  +q+++a++s+ ++ ++  + +l+p+   p+++              q++  qq ++q ++q++qq++++ ++++ a+lq
  CCE27124.1 480 GPGPSQKHIQPAPHMNQG-LMQQQHAQQSHVQQPQTPARGNLTPVNGFPTSQLS------------QPPHPQQSMQQSQAQIQQQQHAQHQHQQQAQLQ 565
                 111122222222223222.33333333333444444444444444444444444............555555555555555555555555555555555 PP

       TFIIA 180 aqsqqaqalaepqqq.lekqqqq.qqqqqqqqqqqqvqqqqqeesqqaqqasqeqvag.sqvessqtdgaedaleeespvlegelsaeeeagaqkeels 275
                 +q qq+q++ + q+q + ++qqq q+qq+ qqqqq ++qq+ +++qq qq+ q+q+++  ++++  +++ + + + ++p  ++  s e++a    + ++
  CCE27124.1 566 QQ-QQLQQQLQHQHQqQLQHQQQlQHQQHLQQQQQLQHQQHLQHQQQLQQQ-QQQLTPnVNATPGHRSSMSRSVDRSTPN-DFSSSLESPAR---HRSG 658
                 55.222222222222112223333444444444443333333222222222.2222221222222222222222221111.22222222221...1223 PP

       TFIIA 276 reeidri 282
                 ++ +d +
  CCE27124.1 659 TASVDGR 665
                 3333333 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   2.5     0.032   1.9e+02     224     474 ..      72     332 ..      40     347 .. 0.55
   2 ?   11.6  18.8   1.2e-05     0.072     214     384 ..     507     682 ..     485     758 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.032
    Macoilin 224 kelvevdpvalsknnhslnkk..dsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymenkskskrlsksessgsesellveesvksks 320
                 ++    +++als+n + +++   ++s  +p    r ++ s + s  +++  +  ++s   ++q++++ + + +s  +   +++g  s+l++++s++++ 
  CCE27124.1  72 QNQNPNQSQALSQNPNPNQNPvyQTSSVIPSKRPRPREDSVTGSPGHNASMQPPSRSETPQQQQQNFAAFQPSSSGVMPPQNPGPFSHLQANGSANASP 170
                 333335677777777666554557777888888888888888887777666666677778888888888888889999999999999999999999999 PP

    Macoilin 321 sssssssn...knskkasagsagssnssskkhsessksvtsssssknskkq..............klpaGkssa.alkdaaenslpnnql....skkda 397
                 s+   +++   +  ++ ++ s  s +  ++++s ++ s+  s + + +  q              +       + ++  +  n+ p + +      +++
  CCE27124.1 171 SPIMGNQMrpgSVPQRVATASPHSFSPGPQHFSGAQTSPIPSEHGTPQPTQflqnmtagfnpgyaQ-------SpSTSRPSPNTNPMAGVgagqMMPQQ 262
                 999988875544445555556666666777777777777777766655555555443332222220.......12222222222222222333333444 PP

    Macoilin 398 lvrLeadikkLkaeLqasrqteqelrskissltseerslkselqqlkkendllqtklhelvsakqkdkqtlqqlekr 474
                 + +L + + +++ ++ ++ q+ q l+++ ++ ++++   + +  + +++    q +l      +q++ q   q++ +
  CCE27124.1 263 MGQLPQHMSQMNPNIYQQMQQ-QMLQQQGQLPSGQQPGQRPQSMNDQQKMIAYQMRL------QQQQLQGNMQMQAQ 332
                 455555555555555443332.33444444444433333333322222222222222......22222222233333 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.2e-05
    Macoilin 214 reaeeqla.aakelvevd...pvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvdsklqe.keymenkskskrlsksessgse 307
                 + +++ ++ a  +l+ v+   +++ls+  h +++   +++ ++++++++ + +++++++ +++++ ++++++++q+  +++++  ++++l+++++ +++
  CCE27124.1 507 SHVQQPQTpARGNLTPVNgfpTSQLSQPPHPQQS--MQQSQAQIQQQQHAQHQHQQQAQLQQQQQLQQQLQHQHQQqLQHQQQLQHQQHLQQQQQLQHQ 603
                 2222222203334455551114555555555555..455566777777766666666666666665666666655505666666677788889899999 PP

    Macoilin 308 sellveesvkskssssssssnknskkasagsagssnssskkhsessksvt..sssssknskkqklpaGkssaalkdaae 384
                 ++l+++++ +++++  +++ n +  + s+ s +   s+++++s+s +s++   s +++ + +q++p+ + saa   aa 
  CCE27124.1 604 QHLQHQQQLQQQQQQLTPNVNATPGHRSSMSRSVDRSTPNDFSSSLESPArhRSGTASVDGRQQTPMAQGSAAATAAAT 682
                 9999999999999999999999999999999999999999999887776511455777778888887777665544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4293  (0.239444); expected 358.6 (0.02)
Passed bias filter:                      820  (0.045736); expected 358.6 (0.02)
Passed Vit filter:                       333  (0.0185733); expected 17.9 (0.001)
Passed Fwd filter:                        79  (0.00440627); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.05u 0.34s 00:00:02.38 Elapsed: 00:00:00.60
# Mc/sec: 6054.66
//
Query:       CCE27125.1  [L=175]
Description: uncharacterized protein CPUR_00597 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-16   58.9   0.0    5.9e-16   58.5   0.0    1.2  1  Img2      Mitochondrial large subunit ribosomal protein (Img2


Domain annotation for each model (and alignments):
>> Img2  Mitochondrial large subunit ribosomal protein (Img2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   3.3e-20   5.9e-16       2      80 .]      92     175 .]      91     175 .] 0.94

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 3.3e-20
        Img2   2 pYfvrRtrsgslPVYtdvkrggtkkltvirkieGDiaalredLrkalee...lvkvnevtgkieikG..drveevkkfLeskgF 80 
                 p+ +rRt+sg++P+Y+++k++++ ++++++k+eGD+ ++ +dL++  +     + v ++++ +eikG  dr ++++++L ++gF
  CCE27125.1  92 PWLMRRTPSGQMPIYKQFKKARQYRFILLKKVEGDVLKFVDDLAEGTGIprdEMAVVPKNQFVEIKGddDRFVQIRNWLLEQGF 175
                 7889******************************************9965555**************877899**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1307.78
//
Query:       CCE27126.1  [L=440]
Description: probable Int-6 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-45  155.3   2.5    2.2e-45  154.3   2.5    1.5  1  eIF3_N    eIF3 subunit 6 N terminal domain
    7.4e-13   48.9   0.0    2.3e-12   47.3   0.0    1.9  1  PCI       PCI domain
  ------ inclusion threshold ------
      0.042   14.7   2.4         11    7.1   0.0    3.3  3  TPR_14    Tetratricopeptide repeat
        0.1   12.8   0.1         13    6.1   0.0    2.4  2  MBDa      p55-binding region of Methyl-CpG-binding domain pro
       0.12   12.3   0.2       0.46   10.5   0.0    2.0  2  DUF771    Domain of unknown function (DUF771)


Domain annotation for each model (and alignments):
>> eIF3_N  eIF3 subunit 6 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.3   2.5   6.2e-49   2.2e-45       3     133 .]      16     151 ..      14     151 .. 0.97

  Alignments for each domain:
  == domain 1  score: 154.3 bits;  conditional E-value: 6.2e-49
      eIF3_N   3 tskllpyLDrHLvfpLLeflsekeiyde.....eellkaklellkkTnmvdyaadlykelegeeevpeelekkreevleeleeleeeaekvlelledee 96 
                 + +++p+L rHL+fpL++f  ek +++e     +++l+ k++ll++Tnm+dy+a+ly+el+g +e p+e++kkr+evl++le++e++++k+ +ll+++e
  CCE27126.1  16 MAQVAPHLSRHLLFPLIQFEGEKAEEKEdtelaKKVLSGKIKLLEDTNMTDYVATLYCELHGVAEPPAEYTKKRQEVLAQLEKYEQATAKIADLLTQDE 114
                 6789***************99998877778999****************************************************************** PP

      eIF3_N  97 vvsnlrsdkkqnlefLkeehgitpemidalykfakFq 133
                 vv+ lrsdk++nlefLk++hg+t+em++aly+f++Fq
  CCE27126.1 115 VVNGLRSDKVANLEFLKNQHGVTMEMVNALYDFGQFQ 151
                 ************************************8 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   6.4e-16   2.3e-12       2     104 ..     306     409 ..     305     410 .. 0.91

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 6.4e-16
                 HHHHHHHHHHHTS.HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEETTTT CS
         PCI   2 sysdllkalrsgn.lsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakidqesg 99 
                 +++++++al+    +++++ +l+  ee    d +la   + +++ +r+   ++++ki+s+  + +l+ +l+l+ de Ek++v+lIr+ +++akid+++g
  CCE27126.1 306 PVTQFVNALYIAHdFDAARDALRLAEEVCRGDFFLASSADAFVNAARHLICESYCKIFSRMNIRDLSAKLGLNPDEGEKWIVNLIRETRLDAKIDSQNG 404
                 5678888888887799999999999777777888899999999999999999*********************************************** PP

                 EEEEC CS
         PCI 100 ivvfk 104
                 +v+++
  CCE27126.1 405 TVIMN 409
                 ***97 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.1   7.6e+03       9      28 ..      91     110 ..      84     114 .. 0.67
   2 ?    7.1   0.0    0.0031        11       2      34 ..     142     174 ..     141     187 .. 0.80
   3 ?    5.6   0.2    0.0093        33       9      31 ..     312     334 ..     308     341 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.1
      TPR_14   9 eallalGdpdeAiallrral 28 
                 e+l++l+++++A a   ++l
  CCE27126.1  91 EVLAQLEKYEQATAKIADLL 110
                 67777888887766555555 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0031
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPdd 34 
                 +al++ +++ ++ G++  A+++l +   l  d+
  CCE27126.1 142 NALYDFGQFQFRCGQYGPAADMLYQFRVLSTDN 174
                 799********************8865555554 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0093
      TPR_14   9 eallalGdpdeAiallrralala 31 
                  al+ + d+d+A+++lr a + +
  CCE27126.1 312 NALYIAHDFDAARDALRLAEEVC 334
                 689999***********998866 PP

>> MBDa  p55-binding region of Methyl-CpG-binding domain proteins MBD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.014        51       8      38 ..     281     311 ..     275     314 .. 0.83
   2 ?    6.1   0.0    0.0036        13      19      52 ..     389     422 ..     382     425 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.014
        MBDa   8 lekskrrtdlslalPiRqTssIFkqPVTrit 38 
                  + +++++ + ++  +Rq ++ +  PVT+  
  CCE27126.1 281 NSSTQQKQLKDIVRYVRQEAYEYADPVTQFV 311
                 4567799999999***************875 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0036
        MBDa  19 lalPiRqTssIFkqPVTritshpenkvrtdlkee 52 
                 l   +R+ + I  q  T+i +hp+n+v ++  e+
  CCE27126.1 389 LIRETRLDAKIDSQNGTVIMNHPPNNVYQQVIEK 422
                 55667999999999************98776655 PP

>> DUF771  Domain of unknown function (DUF771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.7   6.2e+03      31      50 ..     199     218 ..     191     224 .. 0.78
   2 ?   10.5   0.0   0.00013      0.46      24      78 ..     366     424 ..     361     429 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.7
      DUF771  31 kklskssewikeniLenprf 50 
                 ++l++ +e i  ++++npr 
  CCE27126.1 199 EELKNVKEGIDTRLFNNPRA 218
                 67777888899999999985 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00013
      DUF771  24 wtlkdlekkls....kssewikeniLenprfrkeldiekggfvly.pkgkgkkwlfkakk 78 
                 +++ dl  kl+    + ++wi  n+++++r+  ++d+++g+++++ p+++  +++++ +k
  CCE27126.1 366 MNIRDLSAKLGlnpdEGEKWI-VNLIRETRLDAKIDSQNGTVIMNhPPNNVYQQVIEKTK 424
                 566666666443132346899.7999***********99999986255666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3132.26
//
Query:       CCE27127.1  [L=1943]
Description: probable APC1-subunit of anaphase-promoting complex (cyclosome) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-30  104.4   0.5      2e-29  102.8   0.5    1.9  1  ANAPC1    Anaphase-promoting complex subunit 1
  ------ inclusion threshold ------
        2.7    8.6   4.4    1.2e+02    3.4   0.2    4.1  4  PC_rep    Proteasome/cyclosome repeat


Domain annotation for each model (and alignments):
>> ANAPC1  Anaphase-promoting complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.5   2.3e-33     2e-29       1     128 [.     117     248 ..     117     250 .. 0.90

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 2.3e-33
      ANAPC1   1 aLvVllkdqahiyflsGeshtvpLpFevasvfplpkGlllqRkpeedqapprslrnpsappnsfldsssplltsssqtssqkttfstesrgspkrlslt 99 
                 aLvV+lk+qahi+flsG sh+v++pFev+s++++p G+++qR + ++  +p sl++p++ppnsf+ ss+     s  +ssq+ +fs e +g+pk+l+  
  CCE27127.1 117 ALVVFLKTQAHIFFLSGASHVVHMPFEVESACAAPIGVIIQRRQSAESVAPISLKFPRVPPNSFV-SSQL----SALNSSQQMAFSIEGLGKPKPLHFG 210
                 7********************************************999*****************.5554....5789********************* PP

      ANAPC1 100 lsstles.........kkdsslPslfsLtdPlsevglv 128
                 +s tle          ++++s P+  s+ d  +e+ +v
  CCE27127.1 211 SSLTLEVgepeldgrrHTRNSKPRKPSFLDAAEEILHV 248
                 ****9989999999865555578877777877777776 PP

>> PC_rep  Proteasome/cyclosome repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.015   1.3e+02       2      14 ..    1342    1354 ..    1341    1362 .. 0.85
   2 ?    3.4   0.2     0.013   1.2e+02       1      18 [.    1386    1404 ..    1386    1420 .. 0.80
   3 ?   -0.5   0.0      0.23   2.1e+03       8      24 ..    1599    1615 ..    1599    1622 .. 0.84
   4 ?   -2.4   0.1      0.92   8.2e+03       4      22 ..    1641    1659 ..    1634    1664 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.015
                  HHHHHHHHCTTST CS
      PC_rep    2 AllALGlihaGsg 14  
                   ++++Gl++++s 
  CCE27127.1 1342 GIMGIGLLYCNSQ 1354
                  79*********86 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.013
                  HHHHHHHHHCTTSTCH.HH CS
      PC_rep    1 GAllALGlihaGsgne.ea 18  
                  +A +ALG i++G g +  +
  CCE27127.1 1386 AAGFALGFINLGKGGDlKG 1404
                  699*********8876455 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.23
                  HHCTTSTCHHHHHHHHH CS
      PC_rep    8 lihaGsgneeaislLkp 24  
                  +++aG+g+ +++  L++
  CCE27127.1 1599 IVMAGTGDIPVLRRLRS 1615
                  89******999887765 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.92
                  HHHHHHCTTSTCHHHHHHH CS
      PC_rep    4 lALGlihaGsgneeaislL 22  
                  l++G +  G+ n ++ +lL
  CCE27127.1 1641 LGCGTVTFGTSNMAIAALL 1659
                  5666677788888666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1943 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.45
# Mc/sec: 12892.08
//
Query:       CCE27128.1  [L=1315]
Description: related to VPS41-required for the vacuolar assembly [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-22   78.7   1.7    1.7e-21   76.6   0.7    2.4  2  Clathrin        Region in Clathrin and VPS
     0.0021   16.4  18.6     0.0031   15.8  18.6    1.3  1  Nop14           Nop14-like family
     0.0055   16.2  17.0      0.012   15.1  17.0    1.5  1  SDA1            SDA1
     0.0055   16.2   0.1      0.011   15.2   0.1    1.4  1  NBP1            Fungal Nap binding protein NBP1
     0.0091   16.3   1.4      0.024   14.9   0.4    2.2  2  Vps39_1         Vacuolar sorting protein 39 domain 1
  ------ inclusion threshold ------
      0.033   12.5   7.9      0.057   11.7   7.9    1.4  1  CDC45           CDC45-like protein
        0.1   13.1   0.5       0.28   11.6   0.0    1.9  2  Vps39_2         Vacuolar sorting protein 39 domain 2
       0.15   11.4  19.0       0.36   10.1  19.0    1.6  1  BUD22           BUD22
       0.73    9.6   2.3        1.5    8.6   2.3    1.6  1  zf-RING_11      RING-like zinc finger
        2.1    6.3  33.0        3.7    5.6  33.0    1.3  1  DNA_pol_phi     DNA polymerase phi
        8.9    6.3  28.2         24    4.9  28.2    1.7  1  Merozoite_SPAM  Merozoite surface protein (SPAM)


Domain annotation for each model (and alignments):
>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.66   1.1e+03      90     122 ..     883     915 ..     878     925 .. 0.79
   2 !   76.6   0.7   1.1e-24   1.7e-21      11     142 ..     969    1117 ..     965    1118 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.66
                 HHHHHTTXTHSSHSSXSSSSHCSCHHHHTTTTT CS
    Clathrin  90 vilykkinefkkaisllkklkdfddaieyaakv 122
                   ly + ++f +a++ + kl+d d a++ ++++
  CCE27128.1 883 ARLYEAGGRFRDALKSYIKLHDADSAFRLIRER 915
                 55999999******9999999999988877765 PP

  == domain 2  score: 76.6 bits;  conditional E-value: 1.1e-24
                  CCCHHHHHCTT-HHHHCHHHCCHH......HCHTS..........--HHHHHHHHHHHHHT....T-HHHHHHTTSS---S-TTHHHHHHHT-SSHH CS
    Clathrin   11 srvvklfeeaglleelleyLekvl......kedsk..........enpalqtallelyaky....ddpqeleeflkknnnydlekvaklcekadlye 87  
                  + vv+++ +++l+ +l+ yL+ +       +   +          ++++l + +++l++      d+ + l+eflk++++y  ek+ + ce + +y+
  CCE27128.1  969 DVVVEQLRSKKLYLYLYFYLKGLWkgqgirE---HssenmdrlvmDSQSLVDGYADLAVHLfamhDQ-STLMEFLKSSTSYTFEKAVQECEAHSYYD 1061
                  6789999999999999999999885555541...033455667778888888888888877888676.***************************** PP

                  HHHHHHHTTXTHSSHSSX.SSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin   88 eavilykkinefkkaisl.lkklkdfddaieyaakvsnpelwekllealldkkpfe 142 
                  e+v+ly+k ++ k+a+ l +++l + ++aie+a+++++p+lw+ ll++++dk++f+
  CCE27128.1 1062 ELVFLYSKTGQMKRALYLiIDRLRNVQKAIEFAKEQDDPDLWNNLLDYSMDKPNFI 1117
                  *****************99**********************************986 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8  18.6   1.9e-06    0.0031     313     412 ..       6     103 ..       1     192 [. 0.57

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.9e-06
       Nop14 313 easaDdldddfvleeeeeeeefglgkglka...taeee.eeededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeee 407
                 e+saDd d    le+++ ++  g++++ +    ta++   +e +dd+++ +     ++ ++e+eee+++e e de++  +e+ d+dd++d+++++++ee
  CCE27128.1   6 ERSADDNDHPPQLEHDSPTD--GVKTSASDesnTAASGpVVEHQDDSTQAA----AQDVADEDEEEDEDEGEGDEDDPGDEDIDDDDDEDEDEDDDDEE 98 
                 24677777776666666555..33333311122222222222222222222....11222222222222222222222233333333333332222222 PP

       Nop14 408 delee 412
                 +e +e
  CCE27128.1  99 EEEDE 103
                 22211 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1  17.0   7.3e-06     0.012     126     178 ..      32     103 ..       2     214 .. 0.46

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.3e-06
        SDA1 126 dee....................eieesdesedeeeeeeeeeekeekeeeeeeee.eeeeeeeeeeeeeekekk 178
                 ++e                     ++++d  edeee+e+e e++e++  +e+ ++ ++e+e+e++++eee+e++
  CCE27128.1  32 SDEsntaasgpvvehqddstqaaAQDVAD--EDEEEDEDEGEGDEDDPGDEDIDDdDDEDEDEDDDDEEEEEDE 103
                 11111222222222222222333222222..1111111112221111111111110112222222222111111 PP

>> NBP1  Fungal Nap binding protein NBP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   6.7e-06     0.011     157     236 ..    1030    1111 ..    1023    1120 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.7e-06
        NBP1  157 ydkqmleqLrrgrssnkserrvslrnnnleeDqvvlLqkkikklesklkdlekeLeitkkkLkFakekn..kLleslLddan 236 
                  +d+  l +  +++ s+  e+ v+  + +++ D++v L  k  ++++ l+   + L+ ++k+++Fake+   +L ++lLd + 
  CCE27128.1 1030 HDQSTLMEFLKSSTSYTFEKAVQECEAHSYYDELVFLYSKTGQMKRALYLIIDRLRNVQKAIEFAKEQDdpDLWNNLLDYSM 1111
                  667777776667777777777799999***************************************9973369999998765 PP

>> Vps39_1  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.4   3.9e+03      42      69 ..     879     906 ..     873     917 .. 0.85
   2 !   14.9   0.4   1.5e-05     0.024       8      69 ..    1026    1088 ..    1022    1110 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.4
     Vps39_1  42 ykeLidlYygkklheeALeLlkeladed 69 
                 +++L  lY+  +  ++AL+  ++l d+d
  CCE27128.1 879 MQSLARLYEAGGRFRDALKSYIKLHDAD 906
                 578999*************999999843 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.5e-05
     Vps39_1    8 vYlktkpklvgpLlrleNaCdlkdveeiLkkekkykeLidlYygkklheeALeLlkelade.d 69  
                  +++  +++ ++++l+ +   ++++  +  + ++ y eL+ lY + ++ ++AL L+++   + +
  CCE27128.1 1026 LFAMHDQSTLMEFLKSSTSYTFEKAVQECEAHSYYDELVFLYSKTGQMKRALYLIIDRLRNvQ 1088
                  566779999*********************************************998777433 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   7.9   3.5e-05     0.057     137     187 ..      54     105 ..      24     231 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.5e-05
       CDC45 137 e.....eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesdddder 187
                       +e+ee+d+de+e   +e+d  de+ d+++++ +  +++d++ee+++d+e+
  CCE27128.1  54 AaqdvaDEDEEEDEDEGE--GDEDDPGDEDIDDDDDEDE--DEDDDDEEEEEDEEP 105
                 111111111111111111..1111111111111111111..111111112222222 PP

>> Vps39_2  Vacuolar sorting protein 39 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00017      0.28       3      73 ..    1120    1190 ..    1119    1197 .. 0.92
   2 ?   -2.3   0.2       3.7   6.1e+03      53      90 ..    1210    1247 ..    1199    1251 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
     Vps39_2    3 lLskhaerldplevLdllPdelplkdlesflekalrnslekkreeqvvkklrkaeklsveeellklrskkv 73  
                  lL++ ++ ++p+   + +P+ l+++ l++ l ++++++  +++ ++ v+k++++e + ++++l   ++k +
  CCE27128.1 1120 LLEQVGTAINPITLVRRIPEGLEIQGLREGLTHMMKEHELQHSISSGVAKVLRSELAAAQNDLRAGQQKGI 1190
                  79999*******************************************************99998888766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.7
     Vps39_2   53 lrkaeklsveeellklrskkvvvteekvCavCkkrlge 90  
                     +ek+s + +++  ++++ +  +   Ca C+  + e
  CCE27128.1 1210 SIVKEKESRQASVVDDHQNEHRTPQPGSCAGCHEVFTE 1247
                  44567777788888888888888888999999988765 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  19.0   0.00022      0.36     170     232 ..      42     178 ..       2     231 .. 0.37

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
       BUD22 170 dkeeesedsed..eekeeseddeeeeeededdedaee.deedeeaeerelaqydgllasddeded.................................. 231
                 +  e ++ds +  +++ ++ed+ee+e+e+e+ded++  ++ d++++e+e ++ d+  ++++e  d                                  
  CCE27128.1  42 PVVEHQDDSTQaaAQDVADEDEEEDEDEGEGDEDDPGdEDIDDDDDEDEDEDDDD--EEEEE--Deeprfkyarltqnmsglyrngdatsafivggnkm 136
                 1111111111111111111111111111111111111111111111111111111..11111..11233333333333333333333334466666666 PP

       BUD22 232 .........................................e 232
                                                           
  CCE27128.1 137 iigthngnihvvqlptllplrvyhahsasvtsvstspfpppL 178
                 666666666666666666666666655555555555554441 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.3   0.00092       1.5       2      26 ..    1238    1264 ..    1237    1265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00092
  zf-RING_11    2 CsICLeefk..pgqalfilpCsHtFHf 26  
                  C+ C e f+  ++++++   C+H+FH+
  CCE27128.1 1238 CAGCHEVFTeyEMETIIGFGCGHAFHV 1264
                  77799999955566888889******7 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  33.0    0.0022       3.7     631     686 ..      52     104 ..      43     123 .. 0.46

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0022
  DNA_pol_phi 631 kegqaelfedededeeddeeeeeeddeededseedddeeesdedeededdedvdei 686
                  ++  +++   +dedee+de+e e d+++  d+++ddd++e++++++d+++e++de+
   CCE27128.1  52 QAAAQDV---ADEDEEEDEDEGEGDEDDPGDEDIDDDDDEDEDEDDDDEEEEEDEE 104
                  3333333...3444444444444444444444434433333333333333333332 PP

>> Merozoite_SPAM  Merozoite surface protein (SPAM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  28.2     0.015        24      42     102 ..      42     105 ..       7     118 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.015
  Merozoite_SPAM  42 dvveeeeeedleekedeeeEtee.......eeteekneeeieeetedeedEeeveEeeekeeeedkkk 102
                      vve +++  +   +d ++E+ee       +++++  +e+     +d++dE+e e++++ eeeed+++
      CCE27128.1  42 PVVEHQDDSTQAAAQDVADEDEEededegeGDEDDPGDED----IDDDDDEDEDEDDDDEEEEEDEEP 105
                     4555555544333333333333310000013333333444....444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1185  (0.066094); expected 358.6 (0.02)
Passed bias filter:                      784  (0.043728); expected 358.6 (0.02)
Passed Vit filter:                       152  (0.00847788); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:00.55
# Mc/sec: 7234.26
//
Query:       CCE27129.1  [L=175]
Description: uncharacterized protein CPUR_00601 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       988  (0.0551063); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1257.51
//
Query:       CCE27130.1  [L=515]
Description: probable phenylalanine--tRNA ligase beta chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-87  292.3   0.0    6.8e-87  291.0   0.0    1.6  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)
    4.6e-16   58.9   0.8    1.1e-15   57.7   0.8    1.7  1  PheRS_DBD3       PheRS DNA binding domain 3
    6.7e-06   25.7   0.1      0.055   12.9   0.0    2.9  4  tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM 
    3.5e-05   23.7   0.2    0.00015   21.7   0.0    2.2  2  PheRS_DBD2       PheRS DNA binding domain 2
    0.00015   21.0   0.2     0.0044   16.2   0.0    2.7  3  tRNA-synt_2      tRNA synthetases class II (D, K and N)
  ------ inclusion threshold ------
       0.05   13.6   0.0       0.11   12.4   0.0    1.6  1  tRNA-synt_2b     tRNA synthetase class II core domain (G, H, 


Domain annotation for each model (and alignments):
>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.64   1.9e+03      82     128 ..      85     133 ..      72     150 .. 0.71
   2 !  291.0   0.0   2.3e-90   6.8e-87       2     243 ..     213     505 ..     212     507 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.64
                   EE-SSTHHHHHHHHTTS-SSEEEEEE..EEEEBSST-SSSB-SEEEEEE CS
  tRNA-synt_2d  82 lLRthttavqirtlekkkppikiisi..grvfRrdavDathlaeFhqve 128
                    LR+    ++i++lek   +  ++ i  gr+fR+  + +++  +F+ + 
    CCE27130.1  85 ALRAAVEGLTIQELEKAIGDKNVVKIgqGRAFREKWISKSQDGKFKAAK 133
                   6888888888899977665555554422799999888777777776655 PP

  == domain 2  score: 291.0 bits;  conditional E-value: 2.3e-90
                   .-TSSCTSCTSHSB-SHHHHHHHHHHHHHHCTTCEESS.TTSEEEHHHHTSTTTSTTTSHHHCHTTSEBTCTSSS-..................... CS
  tRNA-synt_2d   2 idvtlpgkrieagklhpltkvleeikeiflelgfeeve.gpevesefynfdaLnvpqdhpaRdmqdtFylkkpeka..................... 76 
                   +++++ g+++++g+lhpl+kv++e+++if+e+gf+e+  ++ ves f+nfdaL+vpq+hpaRdmqdtFy+++p++a                     
    CCE27130.1 213 YNFKALGADQQSGALHPLSKVRSELRQIFFEMGFQEMPtDKFVESGFWNFDALFVPQQHPARDMQDTFYVSDPKEAdmpgaedgndqgdykaywdnv 309
                   799999*******************************9999*****************************999999********************* PP

                   .....................ECESEEE-SSTHHHHHHHH.........TTS-SSEEEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHH CS
  tRNA-synt_2d  77 .....................veekllLRthttavqirtl.........ekkkppikiisigrvfRrdavDathlaeFhqveglvvdenvsladlkg 143
                                        +++kl+LRthtta+++++l         + + pp++++si+rvfR+++vDathlaeFhqveg+++d +++l  l+ 
    CCE27130.1 310 qevhqegkygsigyrypwsgeETRKLVLRTHTTAISANMLhklaqqkgpDGRPPPARYFSIDRVFRNETVDATHLAEFHQVEGVIADYDLTLGGLME 406
                   *********************999****************99988777666779******************************************* PP

                   HHHHHHHHHCTSTEEEEEEECEETTEEEEEEEEEEECCSSSSEEEEEEEEEE-HHHHHHTT-.TTSEEEEEEEEHHHHHHHHHT-SSGHHHHTT... CS
  tRNA-synt_2d 144 vleellkklfgaevkvrfrpsyfpftePsaevdvylvekkkkwlEllgaGmvrpevleavgideevsgfafGlGveRlamlkygieDiRelven..d 238
                   +++ ++ k+ g + +++++ +y+p+tePs+e++ y+ +  +k +E++++Gm+rpe+le++g+++++++f++Gl++eR +m+kygi++iRel+ +  d
    CCE27130.1 407 FMDIFFGKM-GIT-DLKYKCAYNPYTEPSMEIFSYH-KGLGKLVEIGNSGMFRPEMLESMGLPKDMRVFGWGLSLERPTMIKYGISNIRELLGHkvD 500
                   *********.**9.**********************.9*****************************************************999778 PP

                   HHHHG CS
  tRNA-synt_2d 239 lrflr 243
                   l+f+r
    CCE27130.1 501 LNFMR 505
                   88876 PP

>> PheRS_DBD3  PheRS DNA binding domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.8   3.6e-19   1.1e-15       1      58 [.      77     135 ..      77     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 3.6e-19
  PheRS_DBD3   1 ShEarvfaavpp.eggisqkel.kklggdpvakiGfskAmknkWikkdkgdgkvvrkvds 58 
                 ShEarvf+a+++  +g++++el k++g+++v kiG+++A++ kWi+k++++ k++++ +s
  CCE27130.1  77 SHEARVFEALRAaVEGLTIQELeKAIGDKNVVKIGQGRAFREKWISKSQDG-KFKAAKES 135
                 9*********978778******8889*********************7766.57777666 PP

>> tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.9   5.8e+03     145     174 ..      39      67 ..      37      69 .. 0.80
   2 ?   -2.1   0.1      0.74   2.2e+03     119     152 ..     105     138 ..      73     146 .. 0.64
   3 !    9.3   0.0   0.00023      0.69      11      45 ..     223     257 ..     218     290 .. 0.89
   4 !   12.9   0.0   1.8e-05     0.055      96     209 ..     364     471 ..     337     478 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.9
  tRNA_synthFbeta 145 dlkgivealleslgiekvefepaehpalhp 174
                      ++kg++++l+++  + k+e    e+++l+p
       CCE27130.1  39 EVKGALDRLASRDMV-KYETIDREEALLEP 67 
                      7999***99999888.88877777777766 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.74
  tRNA_synthFbeta 119 rhlaivltgkreeeswsekaravdfydlkgivea 152
                      +++  +  g++  e+w +k+++ +f  +k+ v+ 
       CCE27130.1 105 KNVVKIGQGRAFREKWISKSQDGKFKAAKESVQD 138
                      4444455567778899999999999999998876 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00023
  tRNA_synthFbeta  11 tegelnkeqklrrklrdllagaGlnEvitysfvse 45 
                      + g+l++  k+r +lr++  ++G++E+ t  fv +
       CCE27130.1 223 QSGALHPLSKVRSELRQIFFEMGFQEMPTDKFVES 257
                      567899*************************9975 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 1.8e-05
  tRNA_synthFbeta  96 dvrlFEigkvflkd.seeelpeeerhlaivltgkreeeswsekaravdfydlkgivealleslgiekvefepaehpalhpgrsAeikvdgk... 185
                        r F i +vf+++  + +  +e +++ +v++  +                l ++++ +++++gi++++++ a +p+ +p   +ei    k   
       CCE27130.1 364 PARYFSIDRVFRNEtVDATHLAEFHQVEGVIADYD-----------LTLGGLMEFMDIFFGKMGITDLKYKCAYNPYTEPS--MEIFSYHKglg 444
                      4899**********988899***************...........99********************************5..67766555557 PP

  tRNA_synthFbeta 186 ...evGvlGelhpevleafdlkqrvyv 209
                         e+G  G + pe+le+++l++ + v
       CCE27130.1 445 klvEIGNSGMFRPEMLESMGLPKDMRV 471
                      788*******************96544 PP

>> PheRS_DBD2  PheRS DNA binding domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.9e-08   0.00015       1      32 [.     138     168 ..     138     169 .. 0.96
   2 ?   -2.2   0.1       1.4   4.3e+03       2      10 ..     232     240 ..     232     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 4.9e-08
  PheRS_DBD2   1 DeVqekLkliqeGkadelddkeknELKKRKLl 32 
                 D++qe+++ iq+ +++  d k +++LKKRKL+
  CCE27130.1 138 DTTQEQMQTIQSTRSC-PDAKMLADLKKRKLV 168
                 9************999.899***********6 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
  PheRS_DBD2   2 eVqekLkli 10 
                 +V+++L++i
  CCE27130.1 232 KVRSELRQI 240
                 699999998 PP

>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.19   5.6e+02      19      47 ..     224     252 ..     213     278 .. 0.83
   2 !   16.2   0.0   1.5e-06    0.0044      93     120 ..     366     392 ..     364     415 .. 0.83
   3 ?    0.7   0.0     0.077   2.3e+02     286     307 ..     473     494 ..     460     497 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.19
                  HHHHHHHHHHHHHHHHHHHHTT-EE---- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2  19 skvlrlrstvtkavrkyleengfieietP 47 
                  s  l   s+v + +r++++e gf e+ t 
   CCE27130.1 224 SGALHPLSKVRSELRQIFFEMGFQEMPTD 252
                  5566667899999**********999875 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.5e-06
                  EEEEEEEEE--S--BTTB-S-CEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2  93 rvfqiaraFRaEdsrtdrhlaEFtqiea 120
                  r+f+i r+FR+E ++++ hlaEF q+e 
   CCE27130.1 366 RYFSIDRVFRNETVDAT-HLAEFHQVEG 392
                  9**************77.566*****95 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.077
                  EEEEEHHHHHHHHCT-SSGGGC CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 286 GlglGldRlvmlllgsesIrdv 307
                  G+gl+l+R +m+  g ++Ir++
   CCE27130.1 473 GWGLSLERPTMIKYGISNIREL 494
                  9*******************97 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.8e-05      0.11      34     172 ..     361     495 ..     325     502 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.8e-05
                   G.SSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SCEEEEEEGTTSCBTTSEEEEEEEEETTTSEEE CS
                   x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  34 r.LPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglefraiielmsaksadykdkkefeavsesltkgi 129
                   r  P +++ i +++R+E+ d      + eFhq +g++       d  l  l++ ++ +f ++g+   + +   +   +  +++ e+  + + l+k +
    CCE27130.1 361 RpPPARYFSIDRVFRNETVDAT---HLAEFHQVEGVIAD----YDLTLGGLMEFMDIFFGKMGITDLKYKCAYN---PYTEPSMEIFSYHKGLGKLV 447
                   33599*************9443...478*******9965....456899**************99766555544...6799**************** PP

                   EEEEEEEEETHHHHHTTE....EEECTTSSEEEEEEEEEEEE.HHHHH CS
                   xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxx.xxxxx RF
  tRNA-synt_2b 130 eigtiqklgtrlserlga....tvldennreksvimicaaig.veRll 172
                   eig  +    ++ e +g+    +v     + +++ mi ++i+ +  ll
    CCE27130.1 448 EIGNSGMFRPEMLESMGLpkdmRVFGWGLSLERPTMIKYGISnIRELL 495
                   ***999998999999999887788888889999999999998666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3854.44
//
Query:       CCE27131.1  [L=584]
Description: uncharacterized protein CPUR_00603 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.18   11.7   0.4       0.34   10.9   0.4    1.4  1  Pox_A_type_inc  Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   1.9e-05      0.34       7      17 ..     409     419 ..     408     420 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.9e-05
  Pox_A_type_inc   7 RsRIsDLErqL 17 
                     +++IsDLErqL
      CCE27131.1 409 QDEISDLERQL 419
                     799*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 4003.99
//
Query:       CCE27132.1  [L=618]
Description: related to PET112-required to maintain rho+ mitochondrial DNA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-99  332.0   0.0    3.4e-99  331.7   0.0    1.1  1  GatB_N     GatB/GatE catalytic domain
    1.8e-09   37.7   0.0      7e-09   35.7   0.0    2.0  2  GatB_Yqey  GatB domain


Domain annotation for each model (and alignments):
>> GatB_N  GatB/GatE catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.7   0.0  3.8e-103   3.4e-99       2     272 ..      97     386 ..      96     387 .. 0.97

  Alignments for each domain:
  == domain 1  score: 331.7 bits;  conditional E-value: 3.8e-103
                 EEEEEEEEEB--SB-SSSSSBSSSSCESTTSS--TTTTTSTT..--EEHHHHHHHHHHHHHTTEEE-SEE-EEEEE-TCTTCTTSEEEEESSS.SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N   2 viGlEiHaqlktksKlFssasteeegeepnsevsevdlalPGtlPvlnkeavelaikaalalnceiaeeskfdRKnyfypdlpkgyQitqkeeplakeG 100
                 ++G+EiHaql++++KlFssa+t ++++epns+v+ +d+++PG++P ++ke +  a++aa+alncei++ s+fdRK+yf++d+p+gyQitq+++p+a++G
  CCE27132.1  97 TVGIEIHAQLNASRKLFSSATT-SFNDEPNSHVALFDVSMPGSQPLFQKESLIPALRAAMALNCEINPVSHFDRKHYFWWDQPSGYQITQYYKPFAQDG 194
                 79*******************5.5*************************************************************************** PP

                 EEEE............TEEEEEEEEEEEE---EEEEEETTEEEEETTSTT-EEEEEEE-STB-SHHHHHHHHHHHHHHHHHHTSB--SGGGTTEEEEEE CS
                 xxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N 101 slel............ekkvrierihlEeDaaksvheekeeslvdlnRaGvpLiEivtepdlrspeearavveklrellralgvsdgnmeeGslRcDvN 187
                  +++            + +vri++++lE+D+ak++ ++ + +++d+nR+GvpLiEi+tepd+++p++a+a+v+k++ ll++++++  +meeG lR+DvN
  CCE27132.1 195 DVTItardgiaaedgeSVNVRIKQMQLEQDTAKTLAQSGTGHWLDMNRVGVPLIEIITEPDMHHPRTAAAFVRKVQLLLTTVDACVSGMEEGGLRVDVN 293
                 ***99999999999888889*****************999*********************************************************** PP

                 EEECTSETTSSS..--EEEEEE-SHHHHHHHHHHHHHHHHHHH.......-EEEEEETTTTEEEEECC----...-EEE-TTS--EE--HHHH CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N 188 vSvreeekgeee.gtrvEiKnlnslksiekaieyeierqiell.......qeTrkfdedkgetvslRskeeaedYryfpepdlppleiseeli 272
                 vSvr++++ +++ gtr+EiKn++++k++e+ai +e +rqi+ l       +eTr+++  ++et++lR ke   dYry+p+pd++pl+i ++l+
  CCE27132.1 294 VSVRKRDDPSRAlGTRTEIKNISTIKAVEDAIIAERDRQIRELeageviaSETRGWTLGSKETRRLRGKEGDVDYRYMPDPDIAPLVIGDDLV 386
                 ****885555557***************************************************************************99987 PP

>> GatB_Yqey  GatB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.33     3e+03      90     116 ..     314     340 ..     304     343 .. 0.77
   2 !   35.7   0.0   7.8e-13     7e-09      13     145 ..     460     609 ..     451     612 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.33
                 XSSXHHHHHHHHHHTXHHHHHHHTTXX CS
   GatB_Yqey  90 deeeleklveeviaenpkavedyksgk 116
                 + + ++++ + +iae + +++++++g+
  CCE27132.1 314 NISTIKAVEDAIIAERDRQIRELEAGE 340
                 445678888889999999999998875 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 7.8e-13
                 HHHHHHHHHTCHHHHHHHHTXXTTCS..........STTHHHHHHHHHHHHTTSSGHHHHHHHHHHHH.HH.TXXHHHHHHHCTXXXXX.XSSXHHHHH CS
   GatB_Yqey  13 aklaanwllnellgelnkegleieel..........kltpeqlaellkliaegkIskkiakevleell.ee.gkspeeiieekgLkqis.deeeleklv 98 
                 a l++nw+l+el +   ++  +++++          +++ ++la+ll  ++ ++I++k ake+l  ++ ++ ++ + e i+ ++L   + ++ee ++l 
  CCE27132.1 460 ATLTSNWILHELGRLATHKAGPLAANfhftddgecaQVPVSDLAQLLYHLSHKRITGKVAKELLWSIYlDQlQGGITETIDANDLWFREiSSEEYRQLA 558
                 6789*********************88999999999****************************99886778***********996555556******* PP

                 HHHHHTXHHHHHHHTTXXT...TSTHHHHHHHHHT.TSSXSXHHHHHHHHH CS
   GatB_Yqey  99 eeviaenpkavedyksgke...kalkflvGqvMkk.tkGkadpklvnellk 145
                 e ++  ++k+++++ + k+     l +lvG++ +     ++dp +++ +++
  CCE27132.1 559 EAAVTGEEKVLREFVNHKKfpqGKLMYLVGRMLRLgPAERIDPVVAEAVMR 609
                 ******************99989999*****99985678889988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4348.80
//
Query:       CCE27133.1  [L=212]
Description: uncharacterized protein CPUR_00605 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-08   32.3  24.7      4e-05   23.6  12.3    2.1  2  Apolipoprotein  Apolipoprotein A1/A4/E domain
    6.3e-05   22.8  55.9      0.079   12.9  19.7    6.1  4  CsbD            CsbD-like
    0.00027   21.5  22.1      0.088   13.4   4.7    3.3  3  DUF883          Bacterial protein of unknown function (DUF883
     0.0011   19.4  29.5      0.042   14.4   5.3    3.7  2  YtxH            YtxH-like protein
  ------ inclusion threshold ------
      0.037   14.1  22.6       0.43   10.7   8.0    2.4  2  DivIVA          DivIVA protein
      0.061   13.7  16.5       0.93    9.8   8.3    2.8  2  Gp-FAR-1        Nematode fatty acid retinoid binding protein 
      0.094   12.8  23.1       0.59   10.2  15.4    2.3  2  ApoLp-III       Apolipophorin-III precursor (apoLp-III)
        0.4    9.5  14.9       0.58    9.0  14.9    1.3  1  Spc7            Spc7 kinetochore protein
        0.6    7.6  22.3       0.71    7.3  22.3    1.0  1  DUF3584         Protein of unknown function (DUF3584)
       0.69   10.4  27.0        6.3    7.3  22.6    2.9  2  V-ATPase_G_2    Vacuolar (H+)-ATPase G subunit
       0.89   10.2  19.4        5.4    7.7   8.4    2.4  2  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
          2    8.9  18.8        3.2    8.3  13.7    2.4  2  KELK            KELK-motif containing domain of MRCK Ser/Thr 
        2.3    8.8  24.2        1.3    9.6  14.4    2.2  2  V-ATPase_G      Vacuolar (H+)-ATPase G subunit
        2.7    8.4  22.0         11    6.4   7.9    2.2  2  YlqD            YlqD protein
        3.4    7.5  17.5        2.7    7.8   2.9    3.3  4  CdvA            CdvA-like coiled-coil domain
        5.9    7.0  33.7       0.37   10.9  12.8    3.1  3  ATP-synt_B      ATP synthase B/B' CF(0)
        6.2    6.0  32.9       0.46    9.7  16.8    2.1  2  ISG65-75        Invariant surface glycoprotein
        6.5    7.1  10.6         76    3.7   8.1    3.2  2  DUF948          Bacterial protein of unknown function (DUF948
        6.8    7.0  13.9        2.5    8.4  10.2    2.1  2  DUF5082         Domain of unknown function (DUF5082)
        8.1    6.3   9.7        5.5    6.8   4.7    3.1  3  Synaptobrevin   Synaptobrevin
        9.2    6.0  11.4        8.9    6.1   6.9    2.0  2  PIN_8           PIN like domain
        9.5    6.0  10.2         11    5.7   0.9    2.5  3  PRKCSH-like     Glucosidase II beta subunit-like


Domain annotation for each model (and alignments):
>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6  12.3     5e-08     4e-05     103     185 ..      66     151 ..      15     156 .. 0.92
   2 !   18.0  11.7   2.5e-06    0.0021      89     172 ..     132     211 ..     130     212 .] 0.75

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 5e-08
                     HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-T...TSHHHHHS--XXXXXXXXXX CS
  Apolipoprotein 103 elrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelreklee...qaeelrerleanleelkaql 185
                      ++e++++++e++ +  +  +e+l+ + + ++eelk +++ ++e+++ ++++   e++ek+ee   qa+e++ +++  +eelk q 
      CCE27133.1  66 SAKESVKEGTEKVLKANKGTAEKLKGQAKGKVEELKGEAQGKTEALKGKAQKMTGEAQEKVEEvksQAKEMTGQAQSKAEELKGQA 151
                     48999********************************************************99999*****************986 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.5e-06
                     CHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHH CS
  Apolipoprotein  89 daeelqeqlavyaeelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrekleeqaeelre 172
                     +a+e+  q +++aeel+ +++ ++e+lk + ++ + ++++    ++eelk +++ +++e++ ++   + +++ k++ +aee+++
      CCE27133.1 132 QAKEMTGQAQSKAEELKGQAQGKTEELKGQAQEMTGQAQS----KAEELKGQAQGKTDELKGQAKGAAARAQGKAAGAAEEMKR 211
                     6777788888888888888888888888887766666655....8888888888888888888888888888888888888875 PP

>> CsbD  CsbD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.6     0.015        13      14      52 ..      67     105 ..      66     106 .. 0.83
   2 !   12.9  19.7   9.7e-05     0.079       4      52 ..      83     134 ..      82     135 .. 0.78
   3 !    8.3  15.8    0.0026       2.1       2      52 ..     128     174 ..     127     181 .. 0.83
   4 ?    3.6  10.0     0.079        64       2      49 ..     179     200 ..     170     210 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.015
        CsbD  14 vKeaaGkaTgdekleaeGkadqlkGkaqqkygdakdaak 52 
                 +Ke + + T+   +  +G a++lkG+a+ k++ +k +a+
  CCE27133.1  67 AKESVKEGTEKVLKANKGTAEKLKGQAKGKVEELKGEAQ 105
                 66666677778888899***************9999986 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 9.7e-05
        CsbD   4 kgkaeqvkGkvKeaaGkaTgdekleae...GkadqlkGkaqqkygdakdaak 52 
                 kg+ae++kG++K ++ ++ g  + ++e   Gka++  G+aq+k++ +k +ak
  CCE27133.1  83 KGTAEKLKGQAKGKVEELKGEAQGKTEalkGKAQKMTGEAQEKVEEVKSQAK 134
                 7899999999998887777765544433339999999999999999999998 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0026
        CsbD   2 kikgkaeqvkGkvKeaaGkaTgdekleaeGkadqlkGkaqqkygdakdaak 52 
                 ++k +a++++G+++ +a ++ g    +a Gk ++lkG+aq+ +g+a+ +a+
  CCE27133.1 128 EVKSQAKEMTGQAQSKAEELKG----QAQGKTEELKGQAQEMTGQAQSKAE 174
                 6899999999999999988877....8888888888888888888888876 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.079
        CsbD   2 kikgkaeqvkGkvKeaaGkaTgdekleaeGkadqlkGkaqqkygdakd 49 
                 +++gk +++kG++K aa                          + a+ 
  CCE27133.1 179 QAQGKTDELKGQAKGAA--------------------------ARAQG 200
                 33444444444444444..........................44433 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   4.8   0.00013       0.1       5      67 ..      73     135 ..      61     136 .. 0.78
   2 !   13.4   4.7   0.00011     0.088      21      68 ..     118     165 ..     111     169 .. 0.89
   3 !    9.1   4.1    0.0025         2      22      66 ..     166     210 ..     163     212 .] 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00013
      DUF883   5 aeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaadd 67 
                 + +e++l+  +  +++ + +a+ ++eel+ +++ + e+++ ++++++ +++e+++e+  +a++
  CCE27133.1  73 EGTEKVLKANKGTAEKLKGQAKGKVEELKGEAQGKTEALKGKAQKMTGEAQEKVEEVKSQAKE 135
                 455677777777778888888888888888888888888888888888888888888888776 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00011
      DUF883  21 aadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddy 68 
                    ea+e++ee++++++e+  +a++++++++ +++ +++e   +a+++
  CCE27133.1 118 MTGEAQEKVEEVKSQAKEMTGQAQSKAEELKGQAQGKTEELKGQAQEM 165
                 567899**********************************99999886 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0025
      DUF883  22 adeageeaeelRerleerlerarerlrdaeeavaerakeaaeaad 66 
                   +a+++aeel+ +++ + ++++ +++ a+ +++ +a  aae+ +
  CCE27133.1 166 TGQAQSKAEELKGQAQGKTDELKGQAKGAAARAQGKAAGAAEEMK 210
                 5689999********************999999999999998765 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0  20.4      0.18   1.5e+02      24      73 ..      98     150 ..      35     159 .. 0.91
   2 !   14.4   5.3   5.2e-05     0.042      22      74 ..     143     191 ..     140     192 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.18
        YtxH  24 ketRkdlkekaddlkekakelleeakeka...kekaedlkekvkekadelkek 73 
                 +e++ +++ k+++lk ka++++ ea+ek+   k++a++++ ++++ka+elk +
  CCE27133.1  98 EELKGEAQGKTEALKGKAQKMTGEAQEKVeevKSQAKEMTGQAQSKAEELKGQ 150
                 57788888889999999999999999999999999999999999999999876 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 5.2e-05
        YtxH  22 sGketRkdlkekaddlkekakelleeakekakekaedlkekvkekadelkekv 74 
                 + +e++ +++ k+++lk +a+e++ +a    ++kae+lk +++ k+delk ++
  CCE27133.1 143 KAEELKGQAQGKTEELKGQAQEMTGQA----QSKAEELKGQAQGKTDELKGQA 191
                 668999999999999999999999999....******************9876 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   8.0   0.00053      0.43      61     126 ..      71     136 ..      61     141 .. 0.85
   2 ?    8.1   8.2    0.0034       2.7      72     124 ..     140     192 ..     135     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00053
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  61 leetLkktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeieelkrqarlf 126
                 ++e  +k l +++ tae++k +ak + e +  eA+ k e++  +a++ + +++e++ee+k qa+  
  CCE27133.1  71 VKEGTEKVLKANKGTAEKLKGQAKGKVEELKGEAQGKTEALKGKAQKMTGEAQEKVEEVKSQAKEM 136
                 55555566667788**********************************************999865 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0034
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  72 aqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeieelkrqar 124
                 aq+ aee+k +a+ + e +  +A++   + +++aee   +++ +++elk qa+
  CCE27133.1 140 AQSKAEELKGQAQGKTEELKGQAQEMTGQAQSKAEELKGQAQGKTDELKGQAK 192
                 89999999999999999999999999999999999999999999999999876 PP

>> Gp-FAR-1  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   8.3    0.0011      0.93      39      90 ..      97     148 ..      64     154 .. 0.56
   2 ?    6.7   2.0      0.01       8.4      49     104 ..     154     209 ..     146     212 .] 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
    Gp-FAR-1  39 edellaalKkkspaLyekaeklqaklkekvdkLspeakeFvkkliakgrkle 90 
                 ++el  +   k++aL +ka+k+  + +ekv++ + +ake + +  +k+ +l+
  CCE27133.1  97 VEELKGEAQGKTEALKGKAQKMTGEAQEKVEEVKSQAKEMTGQAQSKAEELK 148
                 3344444444566666666666666666666666666666555555555554 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.01
    Gp-FAR-1  49 kspaLyekaeklqaklkekvdkLspeakeFvkkliakgrkleaqvlagekpdlsel 104
                 k+++L ++a+++  + + k ++L+ +a+  +++l +++++  a+ + ++    +e+
  CCE27133.1 154 KTEELKGQAQEMTGQAQSKAEELKGQAQGKTDELKGQAKGAAARAQGKAAGAAEEM 209
                 8999************************9999999999998888777666665555 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   1.2     0.017        14      87     122 ..      66     101 ..      36     105 .. 0.81
   2 ?   10.2  15.4   0.00073      0.59      28     122 ..     112     210 ..     104     212 .] 0.43

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.017
   ApoLp-III  87 elqekvQsgvqslvkesqklaeslkensqeakekla 122
                   +e+v +g+++++k  +++ae+lk ++++  e+l+
  CCE27133.1  66 SAKESVKEGTEKVLKANKGTAEKLKGQAKGKVEELK 101
                 457889999999999999999999999988888876 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00073
   ApoLp-III  28 Kensenlvdqlkqvikslqeelkkksdeleealkevkkkieetadklse....enPevkkkaqelqekvQsgvqslvkesqklaeslkensqeakekla 122
                 K +++++  ++++  +++++++k+ ++++++  +e+k + +  +++l+        +++ ka+el+ + Q ++ +l  +++++a++ + ++++a e+++
  CCE27133.1 112 KGKAQKMTGEAQEKVEEVKSQAKEMTGQAQSKAEELKGQAQGKTEELKGqaqeMTGQAQSKAEELKGQAQGKTDELKGQAKGAAARAQGKAAGAAEEMK 210
                 333333333333333333333333333333333333333333333333311113333444555555555555555555555555555555555555554 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  14.9   0.00072      0.58     155     252 ..      76     178 ..      58     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00072
        Spc7 155 kelLekqeeeldellpeleeekaeleeeleklqe....aaeelesidkeeLeelreelaelkaeieekkkela.elqeqleeleekieelkeqkselee 248
                 +++L++++  +++l+ + + + +el+ e++   e    +a++++   +e++ee++++ +e   + ++k +el+ + q + eel+ + +e++ q ++  e
  CCE27133.1  76 EKVLKANKGTAEKLKGQAKGKVEELKGEAQGKTEalkgKAQKMTGEAQEKVEEVKSQAKEMTGQAQSKAEELKgQAQGKTEELKGQAQEMTGQAQSKAE 174
                 56778888888888888888888887776654444444999999999******************99999997578999999******99999999888 PP

        Spc7 249 eiae 252
                 e++ 
  CCE27133.1 175 ELKG 178
                 8874 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  22.3   0.00087      0.71     612     759 ..      62     210 ..      58     212 .] 0.88

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00087
     DUF3584 612 eealqsaeakqkqaeeelkqlnaeleeakravaeaatalknard.tlerlqnekesekdklekaiaerkqqaeeqlqkldaqlkqleeqqkaaleelke 709
                 + a+ ++e+ ++ +e+ lk+ + ++e++k +++ + ++lk + + + e l+ + ++   + ++ ++e k+qa+e   + + +++ l+ q +   eelk 
  CCE27133.1  62 DAAVSAKESVKEGTEKVLKANKGTAEKLKGQAKGKVEELKGEAQgKTEALKGKAQKMTGEAQEKVEEVKSQAKEMTGQAQSKAEELKGQAQGKTEELKG 160
                 56778888999999***********************99976552788999999********************************************* PP

     DUF3584 710 dlseerlekkakwqevvgeldeqlaelkkaieaartqakarlkeleeayk 759
                 +++e + + ++k +e+ g+ + + +elk +++ a + a+ + +   e++k
  CCE27133.1 161 QAQEMTGQAQSKAEELKGQAQGKTDELKGQAKGAAARAQGKAAGAAEEMK 210
                 ***************************99998777777666666666555 PP

>> V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   1.2     0.086        70      22      61 ..      69     108 ..      62     118 .. 0.70
   2 ?    7.3  22.6    0.0077       6.3      14      93 ..     108     186 ..     103     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.086
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G_2  22 EaArkeaereveaAeaeAarilreAeakakalqaeyeqel 61 
                   E  ++ +e+ ++a +  A+++  +A+ k+++l+ e + ++
    CCE27133.1  69 ESVKEGTEKVLKANKGTAEKLKGQAKGKVEELKGEAQGKT 108
                   5566667777777778888888888888888876655444 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0077
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH CS
  V-ATPase_G_2  14 EaeLdqrlEaArkeaereveaAeaeAarilreAeakakalqaeyeqelaeevarireeararaeaeaqavrkraearlqq 93 
                    ++L+ +  +   ea+++ve+ + +A+ +  +A+ ka++l+ +  q  +ee +  ++e+  +a+++a++++ +a+++ ++
    CCE27133.1 108 TEALKGKAQKMTGEAQEKVEEVKSQAKEMTGQAQSKAEELKGQA-QGKTEELKGQAQEMTGQAQSKAEELKGQAQGKTDE 186
                   5678888888899****************************995.666788899999******************99765 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.5     0.008       6.5      19      81 ..      80     142 ..      75     143 .. 0.83
   2 ?    7.7   8.4    0.0066       5.4      16      69 ..     135     188 ..     131     209 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.008
  HIP1_clath_bdg  19 rqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqs 81 
                     ++++   e+ k + + ++e+lk ea+ k+e  k + +k+  e ++k +e+++  + ++ ++qs
      CCE27133.1  80 KANKGTAEKLKGQAKGKVEELKGEAQGKTEALKGKAQKMTGEAQEKVEEVKSQAKEMTGQAQS 142
                     566667788899999999999999999999999999999999999999999888888777776 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0066
  HIP1_clath_bdg  16 svarqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraela 69 
                      ++ qaq+  e  k + + + e+lk +a++++ + +++ e+Lk + + k +el+
      CCE27133.1 135 EMTGQAQSKAEELKGQAQGKTEELKGQAQEMTGQAQSKAEELKGQAQGKTDELK 188
                     57889*****************************************99999997 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  11.5    0.0082       6.7      13      79 ..      72     147 ..      65     148 .. 0.71
   2 ?    8.3  13.7     0.004       3.2      16      79 ..     112     176 ..      96     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0082
        KELK  13 kqEkeelqkelaeaqErlksqkk....eLkdaisqrkla.....mqefsevneklselrsqkqklsRqlrdkeeEl 79 
                 k+  e++ k  + + E+lk q+k    eLk + + +  a     ++   e++ek++e++sq ++++ q + k eEl
  CCE27133.1  72 KEGTEKVLKANKGTAEKLKGQAKgkveELKGEAQGKTEAlkgkaQKMTGEAQEKVEEVKSQAKEMTGQAQSKAEEL 147
                 55566777777888888888875555588855554444311110444569*************************8 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.004
        KELK  16 keelqkelaeaqErlksqkkeLkdaisqrklamqefs.evneklselrsqkqklsRqlrdkeeEl 79 
                 k ++qk   eaqE++ + k++ k+ + q +  ++e++ +++ k +el+ q q+++ q + k eEl
  CCE27133.1 112 KGKAQKMTGEAQEKVEEVKSQAKEMTGQAQSKAEELKgQAQGKTEELKGQAQEMTGQAQSKAEEL 176
                 7788999999****99999999999***********835789**********************8 PP

>> V-ATPase_G  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   2.9     0.082        67      52      91 ..      70     109 ..      62     119 .. 0.68
   2 ?    9.6  14.4    0.0016       1.3      15      87 ..     121     192 ..     113     199 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.082
                 HHHHHHHHHHSHHHHHHHHHHHHSSHHHHHHHHHHHHHHH CS
  V-ATPase_G  52 efkekeaeklgseeelekkieketeekikelkesvkknke 91 
                   ke  +++l +++ +++k++ +++ k++elk +++ + e
  CCE27133.1  70 SVKEGTEKVLKANKGTAEKLKGQAKGKVEELKGEAQGKTE 109
                 5566666777777777777777777777777776666555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHSSHHHHHHHHHHH CS
  V-ATPase_G  15 eAaeivkeArkrkakrlkqAkeeAekEieeyrakkekefkekeaeklgseeelekkieketeekikelkesvk 87 
                 eA+e+v+e + + +++  qA+++Ae E++   + k +e+k + +e +g+ ++ +++++ +++ k +elk ++k
  CCE27133.1 121 EAQEKVEEVKSQAKEMTGQAQSKAE-ELKGQAQGKTEELKGQAQEMTGQAQSKAEELKGQAQGKTDELKGQAK 192
                 8**********************96.99***************************************998876 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.9     0.013        11      17      86 ..      67     136 ..      64     143 .. 0.84
   2 ?    6.1   7.8     0.016        13      19      77 ..     145     203 ..     139     211 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.013
        YlqD  17 lKeelqqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqllqqleqv 86 
                  Ke +++  ++ +++ +   ++L+ qak  ++e+k + + + e+++ +++k   e +ek +++++q +++
  CCE27133.1  67 AKESVKEGTEKVLKANKGTAEKLKGQAKGKVEELKGEAQGKTEALKGKAQKMTGEAQEKVEEVKSQAKEM 136
                 5888889999999999999999999999999999998888889999999999999999999988888776 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.016
        YlqD  19 eelqqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkk 77 
                 eel+ q q + e+l+ + q+++ qa+   +e+k q + + +e++ q++   ++ + k +
  CCE27133.1 145 EELKGQAQGKTEELKGQAQEMTGQAQSKAEELKGQAQGKTDELKGQAKGAAARAQGKAA 203
                 68889999999999999999999999999999998888888888888877776666555 PP

>> CdvA  CdvA-like coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   2.0     0.016        13      20      57 ..      68     105 ..      61     121 .. 0.85
   2 ?    7.8   2.9    0.0033       2.7      18      60 ..      95     137 ..      92     140 .. 0.93
   3 ?    5.9   4.3     0.013        11      17      59 ..     123     165 ..     116     169 .. 0.92
   4 ?    5.1   1.0     0.023        19      19      58 ..     154     193 ..     148     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.016
        CdvA  20 yeeikekleealkklkekakelkeklkkrlkeledqik 57 
                  e++ke  e+ lk+ k +a++lk + k +++el+ + +
  CCE27133.1  68 KESVKEGTEKVLKANKGTAEKLKGQAKGKVEELKGEAQ 105
                 57899999*************************98876 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0033
        CdvA  18 styeeikekleealkklkekakelkeklkkrlkeledqiksle 60 
                  ++ee+k + + + ++lk ka++   + +++++e+++q k+++
  CCE27133.1  95 GKVEELKGEAQGKTEALKGKAQKMTGEAQEKVEEVKSQAKEMT 137
                 579***********************************99875 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.013
        CdvA  17 kstyeeikekleealkklkekakelkeklkkrlkeledqiksl 59 
                 ++++ee+k + +e   + + ka+elk + + +++el+ q +++
  CCE27133.1 123 QEKVEEVKSQAKEMTGQAQSKAEELKGQAQGKTEELKGQAQEM 165
                 7899**********************************99887 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.023
        CdvA  19 tyeeikekleealkklkekakelkeklkkrlkeledqiks 58 
                 ++ee+k + +e   + + ka+elk + + +++el+ q k 
  CCE27133.1 154 KTEELKGQAQEMTGQAQSKAEELKGQAQGKTDELKGQAKG 193
                 6799999999999999999999999999999999999875 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   1.3       0.1        81      52      90 ..      71     109 ..      61     111 .. 0.71
   2 ?   10.9  12.8   0.00046      0.37      42      91 ..     108     157 ..     103     165 .. 0.90
   3 ?    1.7  10.8      0.31   2.5e+02      50      93 ..     156     199 ..     152     212 .] 0.48

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.1
  ATP-synt_B  52 llaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeae 90 
                 +++  e+ lk  +  A+++  +Ak + e+lk e++ ++e
  CCE27133.1  71 VKEGTEKVLKANKGTAEKLKGQAKGKVEELKGEAQGKTE 109
                 445566667777778888888888888888888887776 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00046
  ATP-synt_B  42 AeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaea 91 
                  e+++ +a+++  ea+++ +e++++A+e+  +A+++ae+lk +++ ++e+
  CCE27133.1 108 TEALKGKAQKMTGEAQEKVEEVKSQAKEMTGQAQSKAEELKGQAQGKTEE 157
                 689999**********************************9999999886 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.31
  ATP-synt_B  50 aallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaea 93 
                 ++l+ +a++   +A+++A+e+  +A+ +  +lk +++ +a+++ 
  CCE27133.1 156 EELKGQAQEMTGQAQSKAEELKGQAQGKTDELKGQAKGAAARAQ 199
                 55555555555555555555555555555555555554444332 PP

>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  16.8   0.00056      0.46      68     148 ..      66     144 ..      59     151 .. 0.90
   2 ?    0.8  11.1      0.29   2.4e+02      91     144 ..     145     202 ..     141     211 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00056
    ISG65-75  68 nakekvdyyvekleslleeakekgtltesdaeklkkaceeAkaknkkarekakkalekaekaskkakeaakkAlGeeleee 148
                 +ake+v++ +ek+  l++++ + ++l+ +++ k++++  eA+ k+++ + ka+k   +a++ ++++k+ ak+  G+ +++ 
  CCE27133.1  66 SAKESVKEGTEKV--LKANKGTAEKLKGQAKGKVEELKGEAQGKTEALKGKAQKMTGEAQEKVEEVKSQAKEMTGQAQSKA 144
                 7899*********..88888899*****************************************************87765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.29
    ISG65-75  91 gtltesdaeklkkaceeAkaknkkarekakkalekaekask....kakeaakkAlGee 144
                 ++l+ +++ k +++  +A++ + +a++ka++ + +a+   +    +ak aa+ A G+ 
  CCE27133.1 145 EELKGQAQGKTEELKGQAQEMTGQAQSKAEELKGQAQGKTDelkgQAKGAAARAQGKA 202
                 5667777788888888888888888888888777777665511115666666666664 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       7.7   6.2e+03      61      74 ..      39      52 ..      33      56 .. 0.70
   2 ?    3.7   8.1     0.094        76      23      74 ..     114     162 ..      57     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.7
      DUF948 61 edvneklekvdplt 74
                e v++ l++vd+ +
  CCE27133.1 39 ESVKDGLKTVDRAV 52
                66777888888655 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.094
      DUF948  23 klkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplt 74 
                 k++k+  ea++ +ee+++q+++++ +++   ++ +    + ++k+e+++   
  CCE27133.1 114 KAQKMTGEAQEKVEEVKSQAKEMTGQAQSKAEELKG---QAQGKTEELKGQA 162
                 567888888888888888888888888876666655...6666666665544 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  10.2    0.0031       2.5      21     117 ..      81     175 ..      63     178 .. 0.88
   2 ?    1.8   0.4      0.34   2.8e+02      16      52 ..     163     200 ..     160     209 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0031
     DUF5082  21 aleekIerLk.eaktklsdekeslkqkkkklekplnssesWkGkeennydgirsnlessyqtyvdkldelidaieeEIerLenqiseaqgvldtlqsq 117
                 a+    e+Lk +ak k+++ k +++ k ++l++++ ++   +G++++++++  s+ ++ + + ++k +el+ + + ++e+L+ q +e++g  +++ ++
  CCE27133.1  81 ANKGTAEKLKgQAKGKVEELKGEAQGKTEALKGKAQKM---TGEAQEKVEEVKSQAKEMTGQAQSKAEELKGQAQGKTEELKGQAQEMTGQAQSKAEE 175
                 555566889989*********************99999...**********************************************99887766655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.34
     DUF5082  16 rseiaaleekIerLk.eaktklsdekeslkqkkkklek 52 
                 ++   + ++k e+Lk +a  k ++ k ++k +    ++
  CCE27133.1 163 QEMTGQAQSKAEELKgQAQGKTDELKGQAKGAAARAQG 200
                 55556777888888877777777777777666655555 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.29   2.4e+02      37      54 ..     105     122 ..      92     124 .. 0.67
   2 ?    6.8   4.7    0.0068       5.5       6      56 ..     120     171 ..     115     182 .. 0.85
   3 ?   -0.5   0.1       1.3   1.1e+03      37      48 ..     181     192 ..     170     200 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.29
                    CCCCHHHHHHHHHHHHHH CS
  Synaptobrevin  37 vdktenLqssaqqFkkqa 54 
                    + kte+L+ +aq+   +a
     CCE27133.1 105 QGKTEALKGKAQKMTGEA 122
                    556777777777655444 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0068
                    HHHHHHHHCCCCHHCCHHHHCHCCCCCHH.HHCCCCHHHHHHHHHHHHHHHH CS
  Synaptobrevin   6 akikaevdevkdimkeNidkvlergekld.eLvdktenLqssaqqFkkqark 56 
                     +++++v+evk+  ke   ++ ++ e+l  + + kte+L+ +aq+   qa+ 
     CCE27133.1 120 GEAQEKVEEVKSQAKEMTGQAQSKAEELKgQAQGKTEELKGQAQEMTGQAQS 171
                    57899***********************834578**********99888765 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.3
                    CCCCHHHHHHHH CS
  Synaptobrevin  37 vdktenLqssaq 48 
                    + kt++L+ +a+
     CCE27133.1 181 QGKTDELKGQAK 192
                    456677776665 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   3.0     0.024        20      48     109 ..      68     132 ..      34     136 .. 0.56
   2 ?    6.1   6.9     0.011       8.9      52     129 ..     112     186 ..     105     208 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.024
       PIN_8  48 resviskekkayedlekeleklkkaaekkleealkk.wakkkald..teelrkelkkqleelkee 109
                 +esv +  +k+++  + + eklk +a+ k+ee+  + + k +al+  ++++  e ++++ee+k++
  CCE27133.1  68 KESVKEGTEKVLKANKGTAEKLKGQAKGKVEELKGEaQGKTEALKgkAQKMTGEAQEKVEEVKSQ 132
                 45555555555555555555555555554444332202233333344555555555555555554 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.011
       PIN_8  52 iskekkayedlekeleklkkaaekkleealkkwakkkaldteelrkelkkqleelkeelkaeleelkksskadkeedp 129
                  +k +k + ++++++e++k++a++ ++  ++++a++ + +++   +elk q +e++ + + ++eelk++ + ++  d+
  CCE27133.1 112 KGKAQKMTGEAQEKVEEVKSQAKE-MTGQAQSKAEELKGQAQGKTEELKGQAQEMTGQAQSKAEELKGQAQGKT--DE 186
                 446667777788888888888884.5555555555555557888888888888888888777777777766654..43 PP

>> PRKCSH-like  Glucosidase II beta subunit-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.9     0.014        11      94     172 ..      48     125 ..      43     129 .. 0.82
   2 ?    5.7   4.9     0.014        12     120     174 ..     109     163 ..      97     176 .. 0.53
   3 ?    2.1   3.9      0.18   1.5e+02     134     171 ..     134     171 ..     124     194 .. 0.42

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.014
  PRKCSH-like  94 vddgvcdydiccdGsdeelgkcenkcaeiarkfeelleeankkvkkglkik.eelllaakkkldelkkklkeledslkak 172
                  vd +v d ++   G d   +  ++  +e ++k+++ ++ + +k+k   k k eel  +a+ k++ lk k +++  + + k
   CCE27133.1  48 VDRAVTD-NVVIPGIDA-AVSAKESVKEGTEKVLKANKGTAEKLKGQAKGKvEELKGEAQGKTEALKGKAQKMTGEAQEK 125
                  7888889.889999998.77888999999999999999999999988887747889999999999999999987776655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.014
  PRKCSH-like 120 aeiarkfeelleeankkvkkglkikeelllaakkkldelkkklkeledslkakkk 174
                  + ++ k+++++ ea++kv++  +  +e++ +a+ k +elk + +   ++lk + +
   CCE27133.1 109 EALKGKAQKMTGEAQEKVEEVKSQAKEMTGQAQSKAEELKGQAQGKTEELKGQAQ 163
                  4444455555555555555555555555555555555555555555555544433 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.18
  PRKCSH-like 134 nkkvkkglkikeelllaakkkldelkkklkeledslka 171
                  ++   ++ +  eel  +a+ k++elk + +e+  + + 
   CCE27133.1 134 KEMTGQAQSKAEELKGQAQGKTEELKGQAQEMTGQAQS 171
                  33333333333444444444444444444443333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2285  (0.127447); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 1353.97
//
Query:       CCE27134.1  [L=306]
Description: uncharacterized protein CPUR_00606 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-09   38.2   0.1      3e-09   36.8   0.1    1.7  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.1   1.7e-13     3e-09       2      63 .]      86     158 ..      85     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.7e-13
                 HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTS...........CCHHHHHH........HHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   2 yYeiLgvskdasedeIkkaYrklalkyHPDkn...........pkdpeaee........kFkeineAyevLsdpekRkqYD 63 
                 +YeiLg+++ a     k+++++l++ yHPD +           +      +        +++ i +A + Lsdp+kR+ YD
  CCE27134.1  86 PYEILGIQRGAPYT--KRRFYQLVKLYHPDTHdasgsgqstttQ------KlsndsrleRYRLIVAANDLLSDPDKRRLYD 158
                 7*********9876..9*************99777766555431......134444555*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2247.56
//
Query:       CCE27135.1  [L=186]
Description: uncharacterized protein CPUR_00607 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.053   13.6   0.2      0.083   12.9   0.2    1.2  1  DUF1451   Zinc-ribbon containing domain


Domain annotation for each model (and alignments):
>> DUF1451  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   4.6e-06     0.083      84     133 ..      50      99 ..      44     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.6e-06
     DUF1451  84 aDktqvelaelaedlehagvyqsGevvglGtlvCekCgkelalkkteeip 133
                 a  t +e+a+ a++ +h+++     v  +G l+C++C+  l+++ +e+i 
  CCE27135.1  50 ASSTDIETASTAQKKRHKHLAFLKFVQVQGGLMCKSCDSVLKINDPERIL 99 
                 567899999999999999999999999*******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1357.16
//
Query:       CCE27136.1  [L=339]
Description: related to enoyl-CoA hydratase precursor,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-40  136.5   0.2    2.3e-32  112.3   0.0    3.1  3  ECH_1     Enoyl-CoA hydratase/isomerase
      9e-26   91.2   0.3    1.4e-21   77.4   0.0    2.2  2  ECH_2     Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
      0.092   13.3   0.3      0.092   13.3   0.3    2.1  3  DEADboxA  Cold shock protein DEAD box A


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0018        11       6      28 ..      52      74 ..      48      84 .. 0.83
   2 !  112.3   0.0   3.8e-36   2.3e-32      41     182 ..     106     248 ..      90     255 .. 0.94
   3 !   15.5   0.0   1.3e-06    0.0079     207     250 ..     295     338 ..     270     339 .] 0.81

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0018
                EEEEEE--CGCTTEE-HHHHHHH CS
       ECH_1  6 vaviklnrPeavNalsaelltEl 28
                +  + lnrP+a Nals +ll+ l
  CCE27136.1 52 IRILELNRPKARNALSRALLAAL 74
                55678***********9998766 PP

  == domain 2  score: 112.3 bits;  conditional E-value: 3.8e-36
                 ECEEEEEE.BTSEEEEEB-HHHHHHHHCHHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHH CS
       ECH_1  41 vravvLtG.gdkaFaaGadlkemaeeekakqallkeevlelwtklytvpkpviaavnGaaigGGlelalacDiviaadnasfglnelklGlipgaggtq 138
                  ra vL++  d  F+aGadlke+ +   ++  ++  ++ + +t+l++v++p+i+a++  a+gGGlelal + +++++ na  gl+e++lG+ipgaggt 
  CCE27136.1 106 TRALVLASaVDACFCAGADLKERRGFTSKETIEFLTTLRATFTALSEVQIPTISAISSVALGGGLELALSTHFRVLSSNAIVGLPETRLGIIPGAGGTA 204
                 699**********************988999999***************************************************************** PP

                 HHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHH CS
       ECH_1 139 ilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqllee 182
                 +l+ +vG+s+A+ ++l+g+++sa ea   Gl d+ v  + + e+
  CCE27136.1 205 RLPAIVGMSRARDLILTGRRVSASEAYFLGLADRLVEVAAVPEK 248
                 **********************************9988877665 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH----- CS
       ECH_1 207 akledalaeqleaeaklfestfskddikeGlqaflEkrkpefed 250
                 a l+      l+ ea+++e +++++d+ e l+af Ekrkp f++
  CCE27136.1 295 AGLQAVGWGRLDKEAEMYERVVATEDRDEALKAFREKRKPVFKG 338
                 4555556667899*****************************97 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0     2e-05      0.12       1      31 [.      52      82 ..      52      86 .. 0.89
   2 !   77.4   0.0   2.3e-25   1.4e-21      37     179 ..     107     247 ..      95     265 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2e-05
                .EEEEE--GGGTT-B-HHHHHHHHHHHHHHC CS
       ECH_2  1 vgvitLnrpkalNaLslemvralkealkewe 31
                +++++Lnrpka NaLs +++ al+  +++++
  CCE27136.1 52 IRILELNRPKARNALSRALLAALRTEVDHVQ 82
                5899*******************99988876 PP

  == domain 2  score: 77.4 bits;  conditional E-value: 2.3e-25
                 SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTH CS
       ECH_2  37 klvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGg 135
                 +++vl +a + +fCAG D+++ +   ++++    ef ++  +   ++++++ p+++ +  +++GgG+ l+++++frv + ++++  PEt++G++P  Gg
  CCE27136.1 107 RALVLASAVDACFCAGADLKERRGFTSKETI---EFLTTLRATFTALSEVQIPTISAISSVALGGGLELALSTHFRVLSSNAIVGLPETRLGIIPGAGG 202
                 68899****************9988888664...59*************************************************************** PP

                 HHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHH CS
       ECH_2 136 syfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklea 179
                 +  L+ + g + ++ l lTG+r+++++a+++gla+ +v+ +++++
  CCE27136.1 203 TARLPAIVGmSRARDLILTGRRVSASEAYFLGLADRLVEVAAVPE 247
                 ******977689**************************9988876 PP

>> DEADboxA  Cold shock protein DEAD box A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.1   1.3e+04      24      42 ..      82     100 ..      78     107 .. 0.65
   2 ?   -3.5   0.1       2.7   1.6e+04      18      29 ..     122     133 ..     121     135 .. 0.69
   3 ?   13.3   0.3   1.5e-05     0.092       3      27 ..     249     273 ..     247     284 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.1
    DEADboxA  24 rrsfsgerreggrafsGer 42 
                 +r+++ + +e+g  +  +r
  CCE27136.1  82 QRQYGPDGQETGLHLEDQR 100
                 5777777777775554444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.7
    DEADboxA  18 Ggraegrrsfsg 29 
                 G+  + rr+f++
  CCE27136.1 122 GADLKERRGFTS 133
                 566677888865 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 1.5e-05
    DEADboxA   3 errgGGrgfgGerreGgraegrrsf 27 
                 ++ +GG ++  er+eG+r eg r+ 
  CCE27136.1 249 RQEEGGHSYCDERQEGARLEGARKL 273
                 34569****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2471.78
//
Query:       CCE27137.1  [L=1130]
Description: related to ubiquitin carboxyl-terminal hydrolase 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-43  147.9   0.0    7.8e-43  146.8   0.0    1.6  1  UCH            Ubiquitin carboxyl-terminal hydrolase
    7.7e-12   45.0   0.5    6.1e-05   22.9   0.1    3.7  3  RPT            A repeated domain in UCH-protein
    1.3e-06   28.3   3.7    1.7e-05   24.6   3.7    2.2  1  UCH_1          Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
      0.062   12.8   1.4        1.2    8.5   0.3    2.7  3  Peptidase_C98  Ubiquitin-specific peptidase-like, SUMO isopep


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.8   0.0   1.7e-46   7.8e-43       1     257 []     414    1030 ..     414    1030 .. 0.92

  Alignments for each domain:
  == domain 1  score: 146.8 bits;  conditional E-value: 1.7e-46
                  -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.....TT.TTS.TTH.......HHHHHHHHHHHHHSH-CCEE--........ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxx........ RF
         UCH    1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkel....nesnplgkkge.......lakalkdlfkellkskskavsP........ 78  
                  +Gl N+GntCy+ns+lQ+Lf++++ rd++ ++e+vk   +++ ++       n++++++        +ak+l++lfk+l +sk++a +P        
  CCE27137.1  414 VGLHNIGNTCYLNSLLQYLFTVKPVRDIVFNYENVKLALTDE-SIssrlLGGNKMQMDRGeavvaqaFAKELSELFKNLMASKHAATKPsqrlanav 509 
                  69************************9999998887766555.332445333444444426888999*************999************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH   79 ................................................................................................. 78  
                                                                                                                   
  CCE27137.1  510 llsthtllrnsqssaepsngtdppplperpyptpplsksmedvemtglnatsvpetaetasnpssmtlidreeghsdlshermdkvpptvhpgrgae 606 
                  ************************************************************************************************* PP

                  .......................................................HHHHHHHHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHCCHCC CS
                  .......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH   79 .......................................................kklkktlsklaksfsgykqqDaqEflaflLdqlhedlnreva 120 
                                                                         +k++++l++ ++s sg +qqD++E++  ++++l+ +++    
  CCE27137.1  607 aqepgnatkleappriagqsqdtqvaeclpaedhehltqdvemtdadaaepesvdQKVLNALEHQKRS-SGTDQQDVEEVMGSIINRLQAAIQP--- 699 
                  *******************************************************************9.*************************... PP

                  CHHHHHHCCCTTSHHHHHH-EEEEE....................................................EEEEEEB-SEEEEEEESEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx....................................................xxxxxxxxxxxxxxxxxxxx RF
         UCH  121 eekwkkhlkrndslitdlfegqlks....................................................klklkrlPeiLiihlkRfsy 165 
                   ++ ++++  + + i + f  ++ +                                                     +++k lP++L+i ++R + 
  CCE27137.1  700 -SCVDEKTGIQLEKIMETFFVTTINytkkfdekeyqseisfdraitafpapdgacslydalgrnfdqqileesklsrYTSIKALPPVLHILIQRSQS 795 
                  .455555555544444444444444488899999******************************************999****************99 PP

                  TEEEEE--SEEB--SEEE-GGGBSS-BTTS-TCS-B............................................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................. RF
         UCH  166 nssksKlntkvefpeeldlssylaeekkkkteekkk............................................................. 201 
                    s  K+ + v +pe+l++++y++   +++  +++                                                              
  CCE27137.1  796 MGS--KNGNAVVIPETLYMDRYMDAPHDSPIFRRRVaawalsdrihdikaqiakidnhpnylsyledcsrgamksvessvehgatdptiaaggetie 890 
                  777..***************99997777776555558999999****************************************************** PP

                  ..............................................................................EEEEEEEEEESCTTSEEEE CS
                  ..............................................................................xxxxxxxxxxxxxxxxxxx RF
         UCH  202 ..............................................................................YeLiavvvHsGslssGHYv 220 
                                                                                                Y+L+av++H+G+l sGHY+
  CCE27137.1  891 ttrsaqeenwdfdgpvdddfllvnpvttasdseqsihveskalsiratdtalrqmmeselqqrehmlkeqqdslkgmaYRLHAVICHRGQLMSGHYW 987 
                  ************************************************************************************************* PP

                  EEEECTTTTEEEEEETTEEEEE-HHCCCTT......CEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxx RF
         UCH  221 ayiknekngkWykydDetvkevkeeeevls......sayiLfY 257 
                  ++i + +++ W+ y+D+ vke k+++evl+      ++y+L Y
  CCE27137.1  988 VWIHDFEDNVWRWYNDDDVKENKDTKEVLEtlsssgEPYFLCY 1030
                  ***********************9988888888999*****99 PP

>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00018      0.82       6      57 ..     182     233 ..     182     234 .. 0.94
   2 !   22.9   0.1   1.4e-08   6.1e-05       3      48 ..     258     305 ..     257     310 .. 0.91
   3 !    8.3   0.0   0.00048       2.2       3      56 ..     326     382 ..     324     384 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00018
         RPT   6 yklLgidentdDdviitayqvkleddpsqkdklrrALkvIAeeRkSelLlnf 57 
                 ykl+g+ +n   + +++ay+ ++e  ps++++l + L+ IA +   elL  +
  CCE27137.1 182 YKLIGVLPNQGREAVVNAYKRQWELLPSRRKDLVESLMGIASDTIDELLSDY 233
                 899999999999******************************9999999877 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.4e-08
         RPT   3 eeAyklLgi..dentdDdviitayqvkleddpsqkdklrrALkvIAee 48 
                  +A+++Lg+  +++ + d +i+a++ kl+ +p++++++r  L +IA++
  CCE27137.1 258 PQALNYLGLysHHTYSADSVIEAFRRKLAQSPADATTARSMLLIIAQA 305
                 59******8867889*******************************87 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00048
         RPT   3 eeAyklLgi.dentdDdviitayqvkl..eddpsqkdklrrALkvIAeeRkSelLln 56 
                 ++ +++Lg+ + + +  ++  a++ kl  +++ ++  ++  A+++IA++  S  L++
  CCE27137.1 326 DTSLAVLGVrHADGPWPLVSDAAKRKLeaSKSKDESQVYIDAVEAIADHTYSPALRQ 382
                 566666666333344567788899999645577**********************98 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   3.7   3.8e-09   1.7e-05       1     297 [.     414     991 ..     414    1006 .. 0.57

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.8e-09
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xx RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplrnlalshlakeckkehcLlcElgflfdmldkakglncqasnFlrals.........................si 74 
                 +GL n  +++YlNslLQ l+ ++p+r ++ +    + +  +  +  +++  + ++ ++g+ + a+ F + ls                           
  CCE27137.1 414 VGLHNIGNTCYLNSLLQYLFTVKPVRDIVFNYENVKLALTDESISSRLLGGNKMQMDRGEAVVAQAFAKELSelfknlmaskhaatkpsqrlanavlL- 511
                 7*************************877766655544444445556666689999999*************66666666655555443333322220. PP

                 xxxxxxxxxxxxxxxxx............................................xxxxxxxxxxx........................... RF
       UCH_1  75 peasalglileeeeete............................................kssaislssli........................... 102
                    s++ l++++    +                                            +++a++ ss++                           
  CCE27137.1 512 ---STHTLLRNS----QssaepsngtdppplperpyptpplsksmedvemtglnatsvpetAETASNPSSMTlidreeghsdlshermdkvpptvhpgr 603
                 ...222222222....02333455555555555555555555544444444444444444422222223333556666666666666666666666666 PP

                 ......................................................xxxxxxxxxxxxxxxxxxxxxx....................... RF
       UCH_1 103 ......................................................qsfnrflldqlekelketkkns....................... 124
                                                                       +s+ + +l+ le++ +++ +++                       
  CCE27137.1 604 gaeaqepgnatkleappriagqsqdtqvaeclpaedhehltqdvemtdadaaepESVDQKVLNALEHQKRSSGTDQqdveevmgsiinrlqaaiqpscv 702
                 666666666666667777777666666666666666666666666666666666455555555555555544433323333333333333333333333 PP

                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 125 .seeesaieqllgtkaettirclkCgseksrksstlvldlkyP.kpsne................kkeakvtfasilksslerekttrawCekCkryqp 205
                  +++  ++e++                     ++++v+ ++y  k +++                +++   ++ + l +++++         +  + + 
  CCE27137.1 703 dEKTGIQLEKI--------------------METFFVTTINYTkKFDEKeyqseisfdraitafpAPDGACSLYDALGRNFDQ---------QILEESK 772
                 31111112222....................2223333333321111111111111111111111223333333333333333.........1112233 PP

                 xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx................................................................. RF
       UCH_1 206 teqrktvknlPpvLalnakleee...eelelwkt................................................................. 236
                 +++  ++k lPpvL +  +++++   +      +                                                                 
  CCE27137.1 773 LSRYTSIKALPPVLHILIQRSQSmgsK------Ngnavvipetlymdrymdaphdspifrrrvaawalsdrihdikaqiakidnhpnylsyledcsrga 865
                 333344447777777777766553330......134455556666667888888888888899999999999999999999999999999999999999 PP

                 .........................................................................xxxxxxxxxxxxxxxxxx........ RF
       UCH_1 237 .........................................................................knwlpleiklsldedknl........ 254
                                                                                          +                +        
  CCE27137.1 866 mksvessvehgatdptiaaggetiettrsaqeenwdfdgpvdddfllvnpvttasdseqsihveskalsiratD----------------Talrqmmes 948
                 99999999999999999999999999999999999999999998888888877777666555554444433332................044455544 PP

                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 255 ..eeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvk 297
                   +++++  +e ++++ + + Y L++v++h+g +  sgh+   ++
  CCE27137.1 949 elQQREHMLKE-QQDSLKGMAYRLHAVICHRG-QLMSGHYWVWIH 991
                 32122222222.345667899***********.666****88887 PP

>> Peptidase_C98  Ubiquitin-specific peptidase-like, SUMO isopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.037   1.6e+02       5      35 ..     417     447 ..     414     504 .. 0.83
   2 ?   -1.6   0.0      0.32   1.4e+03      82     154 ..     682     747 ..     639     751 .. 0.71
   3 ?    8.5   0.3   0.00027       1.2     205     253 ..     957    1010 ..     923    1022 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.037
  Peptidase_C98   5 knkenlCWLDsllvalvhletlkkalseles 35 
                    +n  n C+L+sll  l  ++ +++++ + e+
     CCE27137.1 417 HNIGNTCYLNSLLQYLFTVKPVRDIVFNYEN 447
                    58889*****************999866554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.32
  Peptidase_C98  82 LeevRkkvfkklqpkLkcklGkeespvfalpllLkldslaeklfkssfswefeCseCgvkkkervektlttft 154
                    +eev  +++++lq+ ++ +  +e++ +       +l++++e++f +++++  + +e +++++ ++ + +t+f+
     CCE27137.1 682 VEEVMGSIINRLQAAIQPSCVDEKTGI-------QLEKIMETFFVTTINYTKKFDEKEYQSEISFDRAITAFP 747
                    555555555555555555555555543.......678888888999998888888888888888888888886 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00027
  Peptidase_C98  205 lekysfefegkqYsvtaviqY..kkelkHFvtwirnsdgs...WlecDDLkgpv 253 
                     l++ + +++g+ Y++ avi    +    H+ +wi++ +++   W + DD+k+ +
     CCE27137.1  957 LKEQQDSLKGMAYRLHAVICHrgQLMSGHYWVWIHDFEDNvwrWYNDDDVKENK 1010
                     5566667899*********983344568********999886677778888553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 7515.91
//
Query:       CCE27138.1  [L=89]
Description: uncharacterized protein CPUR_00610 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 650.00
//
Query:       CCE27139.1  [L=514]
Description: uncharacterized protein CPUR_00611 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-10   41.0   0.2    0.00012   22.6   0.0    4.3  5  Ank_2       Ankyrin repeats (3 copies)
    7.9e-09   35.6   0.2      0.013   15.8   0.0    4.3  5  Ank_5       Ankyrin repeats (many copies)
    9.3e-09   35.0   0.8    2.5e-08   33.7   0.8    1.7  1  F-box-like  F-box-like
    1.4e-07   31.2   0.1       0.41   11.4   0.0    5.7  5  Ank_3       Ankyrin repeat
      2e-06   27.9   1.1          1    9.9   0.1    5.4  5  Ank         Ankyrin repeat
    1.4e-05   24.9   0.7    3.5e-05   23.5   0.7    1.7  1  F-box       F-box domain
    1.5e-05   25.5   0.2        1.3    9.7   0.0    4.7  5  Ank_4       Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   8.2e-05      0.21      50      80 ..     117     151 ..      67     154 .. 0.65
   2 ?    2.1   0.0      0.12     3e+02      27      49 ..     184     214 ..     168     222 .. 0.62
   3 !   22.6   0.0   4.7e-08   0.00012       4      82 ..     190     289 ..     187     290 .. 0.71
   4 ?   -0.7   0.0      0.85   2.2e+03      37      63 ..     316     345 ..     313     374 .. 0.56
   5 ?   -0.5   0.0      0.75   1.9e+03      40      78 ..     397     448 ..     356     453 .. 0.42

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.2e-05
       Ank_2  50 d....ndgrtpLhyAarsghleivklLlekgadin 80 
                 +    ++  t+Lh+A++ g+l++++ Ll+ ga  +
  CCE27139.1 117 EdwmlDESSTALHHAVSVGNLRVAEKLLDMGARHD 151
                 123346678*******88**********8888665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.12
       Ank_2  27 ktaLhyAakngnleivklLleh........a 49 
                 + ++++A ++++  +++lL++         a
  CCE27139.1 184 WLPIFLAFMQDDSAMARLLIDRgagheamiA 214
                 6677777777777777888773222244443 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 4.7e-08
       Ank_2   4 AakngnlelvklLl...egadpn...k.....ngktaLhyAakngnleiv...klLleh........adndgrtpLhyAarsghleivklLlekgadin 80 
                 A +++++ + +lL+   +g+++    +     ++ ++Lh+Aa  +  e++   ++L e          ++++ tpLh+A ++g ++ ++  +e gad++
  CCE27139.1 190 AFMQDDSAMARLLIdrgAGHEAMianSctgstTHISILHFAAVDTT-EAIfqwRFLFERfreyknerCTEENDTPLHIALKCGCIQGMQAAVETGADME 287
                 5555556688999994444443243313456789*****9999986.554477****9545555444337899******************99999998 PP

       Ank_2  81 lk 82 
                 ++
  CCE27139.1 288 AR 289
                 77 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.85
       Ank_2  37 gnleivklLleh...adndgrtpLhyAars 63 
                 ++  +++ +++    ++ dg ++L  ++++
  CCE27139.1 316 NHMRCLREFVKLgasVNPDGDSVLADSIEH 345
                 455666666663446667777777777654 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.75
       Ank_2  40 eivklLleh.....ad....ndgr.tpLhyAars...ghleivklLlekgad 78 
                 +++k Ll++     +d    ++g+ + L   +++   +   ++klL+ kga 
  CCE27139.1 397 KVLKNLLSNlvargLDlttqSSGWdSTLNTVIQQpdaQPAWLFKLLCSKGAT 448
                 3344444434433411222344444444444444443445556666655655 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.3e-05     0.058      15      39 ..     123     147 ..     113     151 .. 0.83
   2 ?   -2.7   0.0       3.3   8.3e+03      26      40 ..     193     207 ..     183     208 .. 0.73
   3 !   15.8   0.0   5.1e-06     0.013      12      53 ..     258     297 ..     250     298 .. 0.88
   4 ?   -0.9   0.0      0.86   2.2e+03       8      29 ..     369     387 ..     364     394 .. 0.68
   5 ?   -2.4   0.0       2.6   6.7e+03      35      47 ..     402     418 ..     397     424 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.3e-05
       Ank_5  15 ggntpLhvAakygaadvvrlLlarg 39 
                 ++ t+Lh+A++ g+++v+++Ll++g
  CCE27139.1 123 ESSTALHHAVSVGNLRVAEKLLDMG 147
                 344*******************555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.3
       Ank_5  26 ygaadvvrlLlarga 40 
                 +  + ++rlL++rga
  CCE27139.1 193 QDDSAMARLLIDRGA 207
                 567789999998876 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 5.1e-06
       Ank_5  12 ldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 ++++  tpLh+A k+g+ + ++  ++ gad  +++ + lt+l
  CCE27139.1 258 EEND--TPLHIALKCGCIQGMQAAVETGADMEARNTSLLTPL 297
                 3444..**********************************98 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.86
       Ank_5   8 dvnrldgggntpLhvAakygaa 29 
                 d+   +g + t  hvA+  ++a
  CCE27139.1 369 DP---NGTSLTGSHVASQLVRA 387
                 44...44556889999876666 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 2.6
       Ank_5  35 Ll....argadlnltds 47 
                 Ll    arg+dl+++ s
  CCE27139.1 402 LLsnlvARGLDLTTQSS 418
                 55555599999988765 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.8   9.6e-12   2.5e-08       2      44 ..      25      65 ..      24      66 .. 0.94

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 9.6e-12
  F-box-like  2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrr 44
                 +LP+E  ++I+syLp+s+ + l++ Cr W++ a   p+L++r
  CCE27139.1 25 VDLPPETKSHILSYLPLSSVSHLSQSCRVWHQSA--LPELYTR 65
                58********************************..679**87 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00016      0.41       4      27 ..     126     148 ..     123     149 .. 0.92
   2 ?    1.5   0.0      0.26   6.6e+02       3      27 ..     184     207 ..     182     208 .. 0.87
   3 ?    0.3   0.0      0.63   1.6e+03       4      23 ..     225     246 ..     222     250 .. 0.76
   4 !    8.2   0.0    0.0017       4.3       2      28 ..     260     285 ..     259     286 .. 0.85
   5 ?    0.7   0.0      0.49   1.3e+03      17      30 ..     359     371 ..     349     372 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
       Ank_3   4 tpLhlAarsgnleivkfLlenkga 27 
                 t+Lh+A++ gnl +++ Ll+ +ga
  CCE27139.1 126 TALHHAVSVGNLRVAEKLLD-MGA 148
                 9******************9.886 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.26
       Ank_3   3 etpLhlAarsgnleivkfLlenkga 27 
                 + p++lA ++++ +++++L++ +ga
  CCE27139.1 184 WLPIFLAFMQDDSAMARLLID-RGA 207
                 67889999999999*******.887 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.63
       Ank_3   4 tpLhlAarsgnlei..vkfLle 23 
                 ++Lh+Aa  +  +i   +fL+e
  CCE27139.1 225 SILHFAAVDTTEAIfqWRFLFE 246
                 89*****988887756666665 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0017
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 + tpLh+A+++g++  +++ +e  gad
  CCE27139.1 260 NDTPLHIALKCGCIQGMQAAVE-TGAD 285
                 67***********998888888.6776 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.49
       Ank_3  17 ivkfLlenkgadvn 30 
                 i+ f+++  gad+n
  CCE27139.1 359 IINFFVD-QGADPN 371
                 6999***.9****9 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1    0.0004         1       4      25 ..     126     148 ..     125     156 .. 0.87
   2 ?   -3.8   0.0         7   1.8e+04      17      25 ..     198     207 ..     192     207 .. 0.74
   3 ?   -3.5   0.0         7   1.8e+04       6      11 ..     227     235 ..     225     242 .. 0.71
   4 !    8.8   0.0   0.00093       2.4       3      19 ..     261     274 ..     259     374 .. 0.68
   5 ?   -1.5   0.0       1.6   4.1e+03      11      26 ..     395     405 ..     379     415 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0004
                 BHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGA 25 
                 T+LH A++ g++r+++ LL  GA
  CCE27139.1 126 TALHHAVSVGNLRVAEKLLdMGA 148
                 9***************9994486 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7
                 HHHHHH.TTT CS
         Ank  17 iiklLL.hGA 25 
                 +++lL+ +GA
  CCE27139.1 198 MARLLIdRGA 207
                 6789996686 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 7
                 HHHHH...H CS
         Ank   6 LHlAa...t 11 
                 LH Aa   t
  CCE27139.1 227 LHFAAvdtT 235
                 999985543 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.00093
                 BBHHHHHHHHTTHHHHH CS
         Ank   3 nTPLHlAatngkkriik 19 
                 +TPLH+A  +g   +i+
  CCE27139.1 261 DTPLHIALKCG---CIQ 274
                 7*****95555...443 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1.6
                 HHTTHHHHHHHHTTTS CS
         Ank  11 tngkkriiklLLhGAn 26 
                  ++   ++k+LL + n
  CCE27139.1 395 ERK---VLKNLL-S-N 405
                 445...777776.3.3 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.7   1.4e-08   3.5e-05       2      35 ..      23      56 ..      22      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.4e-08
                HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHH CS
       F-box  2 tlsrLPsevlrhILerLplsdllalrrVSkgwri 35
                ++ +LP+e   hIL++Lpls++  l++ ++ w++
  CCE27139.1 23 PIVDLPPETKSHILSYLPLSSVSHLSQSCRVWHQ 56
                5779**************************9986 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0037       9.5      36      55 .]     125     144 ..      86     154 .. 0.86
   2 ?    3.3   0.1     0.051   1.3e+02       4      42 ..     186     230 ..     183     232 .. 0.63
   3 !    9.7   0.0   0.00052       1.3       3      46 ..     225     271 ..     223     280 .. 0.74
   4 ?    5.0   0.0     0.015        37       2      39 ..     261     297 ..     260     302 .. 0.71
   5 ?   -1.0   0.0       1.1   2.9e+03      11      28 ..     315     332 ..     312     337 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0037
       Ank_4  36 etalhiAakrgnveilklLl 55 
                  talh+A++ gn+++++ Ll
  CCE27139.1 125 STALHHAVSVGNLRVAEKLL 144
                 48888888888888887775 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.051
       Ank_4   4 aLhyaaisgrlelvrlLlekgad.....inaqdnrs..GetalhiA 42 
                 +++ a+++ +  ++rlL+++ga       n +  +s  + + lh+A
  CCE27139.1 186 PIFLAFMQDDSAMARLLIDRGAGheamiANSC-TGSttHISILHFA 230
                 7999999***********98753324433333.3332333466666 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00052
       Ank_4   3 taLhyaai..sgrlelvrlLl....ekgadinaqdnrsGetalhiAakrg 46 
                 ++Lh aa    + +   r+L+    e++   n+++ ++ +t+lhiA+k g
  CCE27139.1 225 SILHFAAVdtTEAIFQWRFLFerfrEYK---NERCTEENDTPLHIALKCG 271
                 5788888877777777899993333333...4556999*********988 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.015
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetal 39 
                  t+Lh a + g+++  +  +e+gad  a+ n s +t+l
  CCE27139.1 261 DTPLHIALKCGCIQGMQAAVETGADMEAR-NTSLLTPL 297
                 57777777777777777777777777777.77777766 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.1
       Ank_4  11 sgrlelvrlLlekgadin 28 
                 +++++++r  +  ga++n
  CCE27139.1 315 QNHMRCLREFVKLGASVN 332
                 79*********9999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3426.73
//
Query:       CCE27140.1  [L=647]
Description: uncharacterized protein CPUR_00612 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-08   33.9   0.2       0.43   11.2   0.0    5.6  5  Ank_4       Ankyrin repeats (many copies)
    3.6e-08   33.9   0.0       0.13   12.9   0.0    4.8  4  Ank_2       Ankyrin repeats (3 copies)
      4e-07   29.8   0.1    1.2e-06   28.3   0.1    1.8  1  F-box-like  F-box-like
      5e-06   26.7   1.7        1.4    9.3   0.1    5.2  5  Ank_5       Ankyrin repeats (many copies)
    6.7e-06   26.1   0.1        3.8    8.4   0.0    6.1  7  Ank_3       Ankyrin repeat
    0.00016   22.0   2.8       0.22   12.0   0.1    4.5  5  Ank         Ankyrin repeat
    0.00039   20.2   1.0    0.00094   19.0   0.1    2.2  2  F-box       F-box domain
  ------ inclusion threshold ------
       0.11   11.8   0.5        0.4   10.0   0.1    1.9  2  DUF4034     Domain of unknown function (DUF4034)


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00087       1.9       2      26 ..     125     149 ..     124     159 .. 0.84
   2 ?    0.2   0.1      0.56   1.3e+03       4      25 ..     191     212 ..     189     237 .. 0.73
   3 !   11.2   0.0   0.00019      0.43       3      47 ..     267     310 ..     265     314 .. 0.94
   4 ?    3.9   0.0     0.039        88      17      38 ..     365     385 ..     360     387 .. 0.81
   5 ?    0.6   0.0       0.4   9.1e+02      20      39 ..     589     607 ..     581     607 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00087
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgad 26 
                 +taLhya+  g+l++ + Ll+ ga 
  CCE27140.1 125 STALHYAVVLGNLRVTKKLLDMGAR 149
                 79******************87754 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.56
       Ank_4   4 aLhyaaisgrlelvrlLlekga 25 
                 +++ a+i ++ ++ +lLle+ga
  CCE27140.1 191 PIFLAFIRSDRQMGQLLLEHGA 212
                 5778888888889999999986 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00019
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgn 47 
                 ++Lh a + g+++  +l +++gad  ++ n+  et+l +++++ +
  CCE27140.1 267 SPLHVALSTGCIQGMQLAVQTGADMERR-NALLETPLTKGVQKLR 310
                 79**************************.**********998865 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.039
       Ank_4  17 vrlLlekgadinaqdnrsGeta 38 
                 +++ l++gadin+  ++ G t 
  CCE27140.1 365 IDFFLDHGADINEI-DSTGSTV 385
                 67889********8.8777665 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.4
       Ank_4  20 LlekgadinaqdnrsGetal 39 
                 L+++g di a+ nr G  +l
  CCE27140.1 589 LISRGLDITAT-NRTGYDPL 607
                 899*******9.*9998776 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   5.6e-05      0.13      40      79 ..     106     150 ..      67     153 .. 0.70
   2 !   11.7   0.0   0.00014      0.31      24      82 ..     225     294 ..     192     295 .. 0.69
   3 ?    1.9   0.0      0.16   3.5e+02      38      81 ..     322     377 ..     316     386 .. 0.53
   4 ?   -0.5   0.0      0.87   1.9e+03      56      83 .]     574     600 ..     553     602 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.6e-05
       Ank_2  40 eivklLle.h....adndgrtpLhyAarsghleivklLlekgadi 79 
                 ++++l    h    ++ +  t+LhyA+  g+l++ k Ll+ ga  
  CCE27140.1 106 NAIQLEFPqHhgflINHERSTALHYAVVLGNLRVTKKLLDMGARH 150
                 44444443224655566678*******99*********9888865 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00014
       Ank_2  24 k.ngktaLhyAakngnlei..vklLleh....ad....ndgrtpLhyAarsghleivklLlekgadinlk 82 
                 +    ++Lh+Aa  + +ei   +l+ ++    ++    +   +pLh+A + g ++ ++l ++ gad++++
  CCE27140.1 225 QmSRVSILHFAAADTTREIdqWQLFFDAfrehINepcaRLSDSPLHVALSTGCIQGMQLAVQTGADMERR 294
                 2556799******999999776888874444533455566889******99*******99999**99877 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.16
       Ank_2  38 nleivklLleh...adndgrtpLhyAars...g...hleivk....lLlekgadinl 81 
                 ++ +++ ++e    ++ +g + L  A+r+   +       v+    ++l++gadin 
  CCE27140.1 322 HITCLRRFVELggsVNPEGDSLLVSAVRYyreNpmvC-PDVRvlidFFLDHGADINE 377
                 4455566665344566666666666666654222221.2222222244556777765 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.87
       Ank_2  56 pLhyAarsghleivklLlekgadinlkd 83 
                 +L y+a  + +e +  L+ +g di++++
  CCE27140.1 574 VLDYSA-ADAIEDISELISRGLDITATN 600
                 676666.467899999998899999875 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   5.3e-10   1.2e-06       6      44 ..      29      65 ..      29      67 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 5.3e-10
  F-box-like  6 dEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrr 44
                +Ei ++I syL+p+ L+rl++ Cr W+++a   p+L+ r
  CCE27140.1 29 PEIKSEIISYLSPEPLSRLSQSCRTWYQFA--IPELYAR 65
                7999**************************..89**986 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00064       1.4       4      39 ..     116     147 ..     114     151 .. 0.79
   2 ?   -3.2   0.0       5.1   1.2e+04      17      24 ..     229     236 ..     227     238 .. 0.81
   3 ?    4.5   0.0      0.02        45      18      53 ..     267     302 ..     255     303 .. 0.81
   4 ?    5.2   0.0     0.013        29      32      53 ..     364     386 ..     358     387 .. 0.76
   5 ?    1.8   0.0      0.14   3.2e+02       1      23 [.     589     610 ..     583     632 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00064
       Ank_5   4 hg.padvnrldgggntpLhvAakygaadvvrlLlarg 39 
                 hg  +++ r+     t+Lh+A+  g+++v ++Ll++g
  CCE27140.1 116 HGfLINHERS-----TALHYAVVLGNLRVTKKLLDMG 147
                 6645555555.....*******************555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.1
       Ank_5  17 ntpLhvAa 24 
                 +++Lh+Aa
  CCE27140.1 229 VSILHFAA 236
                 679****9 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.02
       Ank_5  18 tpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 +pLhvA + g+ + ++l +  gad   +++  +t+l
  CCE27140.1 267 SPLHVALSTGCIQGMQLAVQTGADMERRNALLETPL 302
                 8*************9999977777766666666665 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.013
       Ank_5  32 vrlLl.argadlnltdsrGltal 53 
                 ++ ++ ++gad+n  ds G+t++
  CCE27140.1 364 LIDFFlDHGADINEIDSTGSTVF 386
                 333347*************9975 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.14
       Ank_5   1 LlehgpadvnrldgggntpLhvA 23 
                 L+++g  d+ ++++ g+ pL + 
  CCE27140.1 589 LISRG-LDITATNRTGYDPLELY 610
                 56777.78888888888777665 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0017       3.8       4      27 ..     126     148 ..     123     149 .. 0.91
   2 ?   -2.6   0.0       6.5   1.5e+04      16      27 ..     202     212 ..     191     213 .. 0.71
   3 ?   -0.5   0.0       1.3   2.9e+03       4      17 ..     230     243 ..     229     258 .. 0.79
   4 ?    2.7   0.0      0.12   2.8e+02       4      28 ..     267     290 ..     265     290 .. 0.80
   5 ?    5.7   0.0     0.013        29      17      30 ..     364     376 ..     339     377 .. 0.72
   6 ?   -1.6   0.0         3   6.7e+03       5      29 ..     430     456 ..     429     457 .. 0.67
   7 ?   -3.8   0.0         8   1.8e+04      16      29 ..     585     596 ..     575     597 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0017
       Ank_3   4 tpLhlAarsgnleivkfLlenkga 27 
                 t+Lh+A+  gnl + k Ll+ +ga
  CCE27140.1 126 TALHYAVVLGNLRVTKKLLD-MGA 148
                 9******************9.886 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.5
       Ank_3  16 eivkfLlenkga 27 
                  + ++Lle +ga
  CCE27140.1 202 QMGQLLLE-HGA 212
                 46789999.786 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.3
       Ank_3   4 tpLhlAarsgnlei 17 
                 ++Lh+Aa  +  ei
  CCE27140.1 230 SILHFAAADTTREI 243
                 78*****9888775 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.12
       Ank_3   4 tpLhlAarsgnleivkfLlenkgad 28 
                 +pLh+A++ g++  +++ ++  gad
  CCE27140.1 267 SPLHVALSTGCIQGMQLAVQ-TGAD 290
                 8*******999987777777.5665 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.013
       Ank_3  17 ivkfLlenkgadvn 30 
                 +++f+l+ +gad+n
  CCE27140.1 364 LIDFFLD-HGADIN 376
                 4999999.9****9 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 3
       Ank_3   5 pLhlAarsgnle...ivkfLlenkgadv 29 
                 pL +++++ +     + kfL + +ga +
  CCE27140.1 430 PLSTVMHNRDAQpawLFKFLYR-NGATI 456
                 6666666666633357999999.78876 PP

  == domain 7  score: -3.8 bits;  conditional E-value: 8
       Ank_3  16 eivkfLlenkgadv 29 
                 + +  L+  +g d+
  CCE27140.1 585 D-ISELIS-RGLDI 596
                 3.888999.88887 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   9.9e-05      0.22       4      25 ..     126     148 ..     125     152 .. 0.88
   2 ?   -3.5   0.1       7.8   1.7e+04      19      25 ..     205     212 ..     205     212 .. 0.86
   3 ?    2.7   0.0      0.09     2e+02       4      19 ..     267     279 ..     266     296 .. 0.74
   4 ?    3.8   0.0     0.038        86      18      31 ..     365     379 ..     339     380 .. 0.78
   5 ?   -3.8   0.0         8   1.8e+04      18      31 ..     586     600 ..     586     600 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.9e-05
                 BHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGA 25 
                 T+LH+A+  g++r++k LL  GA
  CCE27140.1 126 TALHYAVVLGNLRVTKKLLdMGA 148
                 9******99*********94486 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7.8
                 HHHH.TTT CS
         Ank  19 klLL.hGA 25 
                 +lLL hGA
  CCE27140.1 205 QLLLeHGA 212
                 68999*98 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.09
                 BHHHHHHHHTTHHHHH CS
         Ank   4 TPLHlAatngkkriik 19 
                 +PLH+A + g   +i+
  CCE27140.1 267 SPLHVALSTG---CIQ 279
                 8****99888...886 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.038
                 HHHHH.TTTSTTCBT CS
         Ank  18 iklLL.hGAnlnald 31 
                 i ++L hGA++n  d
  CCE27140.1 365 IDFFLdHGADINEID 379
                 5689*99****9665 PP

  == domain 5  score: -3.8 bits;  conditional E-value: 8
                 HHHHH.TTTSTTCBT CS
         Ank  18 iklLL.hGAnlnald 31 
                 i++L+ +G +++a++
  CCE27140.1 586 ISELIsRGLDITATN 600
                 788996687888876 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   4.2e-07   0.00094       6      36 ..      27      57 ..      23      58 .. 0.94
   2 ?   -3.5   0.1       4.9   1.1e+04       9      18 ..     404     413 ..     399     414 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.2e-07
                S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHH CS
       F-box  6 LPsevlrhILerLplsdllalrrVSkgwril 36
                L++e+  +I+++L++  l +l++ +++w+++
  CCE27140.1 27 LSPEIKSEIISYLSPEPLSRLSQSCRTWYQF 57
                9***************************985 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.9
                 HHHHHHHHTS CS
       F-box   9 evlrhILerL 18 
                 +vl++ L++L
  CCE27140.1 404 KVLEKLLSHL 413
                 4999999998 PP

>> DUF4034  Domain of unknown function (DUF4034)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00018       0.4      34     126 ..       5     100 ..       2     119 .. 0.90
   2 ?   -1.0   0.1      0.41   9.1e+02     174     243 ..     407     478 ..     398     481 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00018
     DUF4034  34 aekrYlfal.....dlsslldeevagaeglavlkaWqaacPrsyHawllegqywhhrAweirssgwaeevtearwvgaaacnelavlaaLrAlalepr 126
                 a ++Y++a+     d++ l++     +e+ + +  +    P s   + + + y +     +  ++ +    + +w++a+a+ e +++ aL+ l+++ r
  CCE27140.1   5 ARQAYFMAWkqelyDSKCLMT--LLSPEIKSEIISYLSPEPLSRLSQSCRTWYQFAIPELYARDAREGGSYAIKWMAAHAVDEETTEVALKTLDISVR 100
                 568999999999988888888..888999999***********************999999999998888999********************99877 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.41
     DUF4034 174 eaaaallarsgleplaevpqalPsaLpkrkekelekekhYWLraaLairpalfeilkeyilf....lspr.WgGs 243
                 e +  +l+  gl+ +   p  lPs L  +   ++++++  WL+  L    a+++ ++e + f    + pr WgG 
  CCE27140.1 407 EKLLSHLVDRGLDLTRPAP-FLPSPLSTVM--HNRDAQPAWLFKFLYRNGATIKLMEEDAFFlhwcQIPRlWGGT 478
                 6677788888888777665.6888885443..3445556799999999999999999887772222357668876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4903.53
//
Query:       CCE27141.1  [L=203]
Description: uncharacterized protein CPUR_00613 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-06   27.3   0.0    3.6e-06   26.9   0.0    1.1  1  DUF1524   Protein of unknown function (DUF1524)
  ------ inclusion threshold ------
      0.083   12.8   0.0       0.11   12.4   0.0    1.1  1  DUF1796   Putative papain-like cysteine peptidase (DUF1796)


Domain annotation for each model (and alignments):
>> DUF1524  Protein of unknown function (DUF1524)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     4e-10   3.6e-06      42     137 ..     101     197 ..      85     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 4e-10
     DUF1524  42 eegeakkltiEHilPqslaekwegagqedeekreelvndl..gNLtlltkslNsslsnkpfleKrdlykk.sslrlnrklaekdewdeeaiearqeaLa 137
                 ++g  +kl+i+H++P + a+ + ga +++  +r+ ++nd+    L +++   N+s s+ + +e ++++k   + +   ++++k+ +d + ++++++aL 
  CCE27141.1 101 FNGA-SKLDIDHMVPLKNAWIS-GAANWTTAERRAFANDVtrPQLWAVSAHSNRSKSDESPDEWKPALKAfWCTYSRSWIQVKSHYDLTITDDEKDALS 197
                 4555.6777***********99.****************9667899*******9999999999999887778999999******************996 PP

>> DUF1796  Putative papain-like cysteine peptidase (DUF1796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05      0.11      44     104 ..     132     192 ..     119     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
     DUF1796  44 ngFssfldpeqlesassssd.aavtearsrfipdpvkvwllfrnqhallfthhDlanneevk 104
                 + F++ + ++ql  +s +s+  +++e  ++++p  ++ w  +  +   + +h+Dl + ++++
  CCE27141.1 132 RAFANDVTRPQLWAVSAHSNrSKSDESPDEWKPALKAFWCTYSRSWIQVKSHYDL-TITDDE 192
                 568888888998777766551566777789************9999999******.554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1509.12
//
Query:       CCE27142.1  [L=351]
Description: related to CRH1-family of putative glycosidases might exert a common role in cell wall organization [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-29  101.5   0.9    5.2e-29  101.0   0.9    1.2  1  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.9   2.9e-33   5.2e-29       9     175 ..      61     233 ..      53     235 .. 0.82

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 2.9e-33
                     E-GGGEEEETTSEEEEEEEE.........EE.EEEEEECCEESSEEEEEEEE---STTEEEEEEEETGGTSTTEEEEEEEETT-TTEEEEEEEBT CS
  Glyco_hydro_16   9 wsksavsvengetltltldk.........es.gsrikskksflyGkvearikaaksaGvvtafylssedekahdEiDiEflGndtgkvqtnvygk 93 
                     w+ ++ + e+ + l + +d          +  ++++ s+k+ l+Gkv+++++aak+aG++ta++l s   ++ dEiD+E+lG   +++q+n++ +
      CCE27142.1  61 WAVDNSTAEDRKCLDFGTDGkgvamgmfkTGdAPTLASNKYLLFGKVSVTMQAAKGAGLITAMVLKS---DSGDEIDWELLGAYDNQAQSNYFYD 152
                     55555555544444444444444444443556999******************************99...99*********************** PP

                     TBSGE...EEEEETSS-TTTS-EEEEEEEETTEEEEEETTEEEEEEESSHHHHT.--EESEEEEEEEEEEBSHHHSSE-EEEEEE CS
  Glyco_hydro_16  94 Gkgkr...ekrlslwfdptedfHtYaieWtpdkikfyVDgkpvrtltkkeaeevkyPqftpmkvavslwpgsdwateqgkvkidw 175
                     G+      + +++l   + ++  tY++eWt++ ++f++++++ r  ++ e  ++k+Pq  pm+v++++w  ++++ ++   +i w
      CCE27142.1 153 GQALFntyNDTYTLPTSTFDAPQTYTVEWTNQFLSFSINDTLRRIWYRGEIPAEKWPQ-MPMQVKLGVWSVGNKSDPG---TIIW 233
                     *9873345888888999999999**************************998889***.**********999998885...4666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2520.75
//
Query:       CCE27143.1  [L=658]
Description: uncharacterized protein CPUR_00615 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-19   70.3   0.0    4.8e-19   68.9   0.0    1.8  2  PH_9      Pleckstrin homology domain
    0.00027   20.7   0.4     0.0012   18.5   0.2    2.0  2  Sec7      Sec7 domain
  ------ inclusion threshold ------
        0.2   11.2   0.1        1.4    8.5   0.0    2.0  2  DUF3050   Protein of unknown function (DUF3050)


Domain annotation for each model (and alignments):
>> PH_9  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.2   1.3e+04      25      49 ..     108     132 ..     103     148 .. 0.73
   2 !   68.9   0.0   8.1e-23   4.8e-19       1     119 []     300     432 ..     300     432 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.2
        PH_9  25 gWkevyavlkklvLylykdeeeses 49 
                 ++k++y  ++++ L l+   e+++s
  CCE27143.1 108 VLKSIYTSIREERLPLFGGVENEKS 132
                 6789999999999999876554444 PP

  == domain 2  score: 68.9 bits;  conditional E-value: 8.1e-23
        PH_9   1 ykegivqrkllleskgkktplkkrgWkevyavlkklvLylykdeeesesaetedlks.............lknakllgkirlhhaLaek..asdYkk.k 83 
                 +keg+v+ k++l+  g+++  k+r+W+ev+av++k+++ l+ ++ ++++ + +  ++               na  lg  +l  +La+   +++Y++ +
  CCE27143.1 300 IKEGMVMHKHHLDGCGRRA--KDRNWAEVFAVVQKGQISLFSFNASKSTRQKSRSRNvgrptgpvgggnwQDNAVNLGTFTLRLTLASAlpSPGYSRsR 396
                 59*****************..**********************887776666654447899********99999999**********99989******* PP

        PH_9  84 shvFrLqtadgaeylfqtsdakevqeWvdtiNyvAA 119
                 +hv +L + +ga+ lfq+++++ ++e v+t Ny+ A
  CCE27143.1 397 PHVWALSLPTGAVHLFQVGTPEIIREFVHTANYWSA 432
                 **********************************98 PP

>> Sec7  Sec7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2     2e-07    0.0012     133     160 ..       1      28 [.       1      39 [. 0.87
   2 ?   -0.6   0.0      0.15   9.1e+02     168     182 ..     106     120 ..      96     121 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2e-07
                 HHHHHHHC-TTSCCS--HHHHHHCTTTT CS
        Sec7 133 imLntdlhnpqvkkkmtledFiknnrgi 160
                 ++Lntdlh  ++++kmt ++Fikn+  +
  CCE27143.1   1 MLLNTDLHVANIEQKMTRSQFIKNTMTT 28 
                 68**********************9865 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHS- CS
        Sec7 168 eefLeeiYdsIkeee 182
                 e +L++iY+sI+ee+
  CCE27143.1 106 ETVLKSIYTSIREER 120
                 5689********987 PP

>> DUF3050  Protein of unknown function (DUF3050)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00023       1.4     117     168 ..      11      62 ..       3      71 .. 0.77
   2 ?   -0.3   0.0      0.11   6.7e+02      78     107 ..     608     637 ..     601     643 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00023
     DUF3050 117 aaevpeaakeFvettfevieegkahevaaaftfgREdlipdmfrsllkelek 168
                 + e + + ++F+++t+++i+++ a ++ +a++f R +++pd    l ++ ++
  CCE27143.1  11 NIEQKMTRSQFIKNTMTTIKQAVAESTPSALAFVRPSILPDKNPMLAADSSS 62 
                 3344455679******************************987666665554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.11
     DUF3050  78 lsHfelYleameevgadtseiekllellee 107
                 +  f  Y++ +++++a ++ei +  e +++
  CCE27143.1 608 IVKFRTYVDCLQQAEARKKEIYREREVVQR 637
                 56799**************99876666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4607.47
//
Query:       CCE27144.1  [L=970]
Description: uncharacterized protein CPUR_00616 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.06   13.6   0.0       0.18   12.1   0.0    1.7  2  ESP       Exocrine gland-secreting peptide


Domain annotation for each model (and alignments):
>> ESP  Exocrine gland-secreting peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.87   1.6e+04      21      48 ..     484     511 ..     481     532 .. 0.72
   2 ?   12.1   0.0   9.8e-06      0.18      11      69 ..     697     758 ..     692     765 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.87
                 XXXXXXXXXXXXXXXXXXXXXXX---TT CS
         ESP  21 LtqTqkestisAdhktnfkivldkidcq 48 
                 ++     s+ sA  ++  +++++++d+ 
  CCE27144.1 484 IKSSAGKSKKSAAAQSTWEMPFEELDSA 511
                 5666667889999999999999988875 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 9.8e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TT...HHHHHHTTHHHHSSSTHHHHH CS
         ESP  11 lpsmltEGrvLtqTqkestisAdhktnfkivldkidcq...nireaiekvlcasdqdktlle 69 
                 l + ++EG+ L++T+ e ++ A+ k +f  + d        +++ + +  ++ s+q ++ l 
  CCE27144.1 697 LSTPVSEGKTLPRTKSETHVEAEYKRDFSPDYDPSPHArirRVQPEADTPSRPSKQTQKTLR 758
                 666789***********************999865444233666666666888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (970 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 6409.38
//
Query:       CCE27145.1  [L=273]
Description: uncharacterized protein CPUR_00617 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-19   69.8   0.2      6e-19   69.5   0.2    1.1  1  Abhydrolase_6    Alpha/beta hydrolase family
    1.3e-15   57.3   0.0    3.4e-15   56.0   0.0    1.5  1  Hydrolase_4      Serine aminopeptidase, S33
    2.2e-13   50.4   0.1    8.1e-09   35.5   0.2    2.1  2  Abhydrolase_1    alpha/beta hydrolase fold
     0.0034   17.3   0.0        1.8    8.4   0.0    2.2  2  Ser_hydrolase    Serine hydrolase
     0.0077   14.8   1.6      0.062   11.8   0.3    2.1  2  PAF-AH_p_II      Platelet-activating factor acetylhydrolase, 
  ------ inclusion threshold ------
      0.015   15.0   0.9      0.042   13.6   0.1    1.9  2  PGAP1            PGAP1-like protein
       0.05   12.5   0.3       0.16   10.9   0.3    1.8  1  Chlorophyllase2  Chlorophyllase enzyme
        0.1   12.4   0.1         21    4.8   0.0    2.6  3  Abhydrolase_2    Phospholipase/Carboxylesterase
       0.11   11.5   0.0       0.14   11.1   0.0    1.2  1  DUF1057          Alpha/beta hydrolase of unknown function (DU
       0.12   12.5   0.2       0.36   10.9   0.1    2.0  2  Thioesterase     Thioesterase domain
       0.21   10.5   0.0       0.27   10.1   0.0    1.1  1  Asp2             Accessory Sec system GspB-transporter


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.2   3.7e-22     6e-19       1     219 [.      24     254 ..      24     255 .. 0.61

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 3.7e-22
                    EEEE--GC.....GCHHHH.HHHHCCTCEEEEE--TTS.TS-..GGCS--HHHCHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..... CS
  Abhydrolase_6   1 vlllHGagssassWlvapL.aallaagvhvlapDlpGh.Grs..dpppldledladl.aalldelaagggpvvlvGHSlGGalalaaapla....l 87 
                    +l++HG gss+s +   p+   l  +g+ +la+D pG    s   ++  d+e++    +al++ l+ + ++v++vGH +G+++a++    a    +
     CCE27145.1  24 LLFVHGVGSSHSFYS--PIiPSLVKKGHSCLAFDIPGSaL-StyRGRGSDVEAICGAaLALIAVLKLDSRRVIVVGHAMGTIVASE---MAlylnP 113
                    79****999888885..6645556666666******9953.2232222444443333333333333379*****************...5544454 PP

                    .EE.EEES-..----TTTS----TTHHHHHHTT-C....CCCHCCHS-HSCCCCHHHCCCCHCHCCCGHH.........HHCC.....HHC....H CS
  Abhydrolase_6  88 vvg.vlldppptalpagllaaalelllallallrl....lawlsreplprlfladedadaawrarlarla.........alla.....glg....l 160
                      g +l+ p   + p + la++++   +l + +      +           fl+     ++ ++r ++ +         a+ +             
     CCE27145.1 114 -LGiILIGP---MNPSPQLADVFAARGQLVQKEGMegvvD----------VFLS-----VETGPRATATQkafirslllAQSPagyssL-CstimN 189
                    .44499999...9999998888888888888555522223..........3333.....222222222221111111221111222221.122232 PP

                    TTCCHHTT-TTGCEEECTT-C......HHHHCHHCCCH.STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 161 lpaaawadlpvpllvlggeDp......lvprllerlla.qagarlpvvlpgaGHlphleepdevae 219
                       ++++ +++pll+++g+D+        ++ l+ +++ ++ +r+ +vl+g GH++ +e++dev +
     CCE27145.1 190 AQTPRYEEATCPLLIIAGSDDntspmaGSQAILDSWGVaAELKRM-QVLRGVGHWHCIEAADEVEA 254
                    2366*********99987777666655444667777778899999.************888*9976 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   2.1e-18   3.4e-15       6     232 ..      23     242 ..      18     248 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 2.1e-18
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvag 103
                  ++++vHG++++ + y+ ++  L+++G +++a+D  G   s   rg+ ++++ ++  + a++  +k ++  ++++++Gh mG ++a +++l   +   g
   CCE27145.1  23 ILLFVHGVGSSHSFYSPIIPSLVKKGHSCLAFDIPGSALS-TYRGRGSDVEAICGAALALIAVLKLDS--RRVIVVGHAMGTIVASEMALYLNP--LG 115
                  789*************************************.9******************98888665..567***************955555..5* PP

  Hydrolase_4 104 lilsaPalkikaklkappllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleeraakitlPllllhGea 201
                  +il++P+ ++ ++  +  + ++  +l++k   +  v   l  +   r ++ ++a+ +  l+ +   ++    + ++m++ + r +++t Pll++ G++
   CCE27145.1 116 IILIGPM-NPSPQ--LADVFAARGQLVQKEGMEGVVDVFLSVETGPRATATQKAFIRSLLLAQ-SPAGYSSLCSTIMNAQTPRYEEATCPLLIIAGSD 209
                  *******.56666..678888888888888888888777778888888888888887766644.3444444455567777789999************ PP

  Hydrolase_4 202 Dkvvdpeasrelyerlgsk..dktlklypglyH 232
                  D+  ++++s++++++ g +   k++++  g  H
   CCE27145.1 210 DNTSPMAGSQAILDSWGVAaeLKRMQVLRGVGH 242
                  **************9887766899999888877 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.2     5e-12   8.1e-09       1     120 [.      22     133 ..      22     162 .. 0.84
   2 !   13.2   0.0   3.2e-05     0.052     204     256 ..     195     248 ..     160     249 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 5e-12
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHH.HHHCTTSSEEEEEETHHHHHHHHHHHHHG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldri.ldalgddkltlvGhSmGGmialayaaeyp 95 
                    p l+++hG + s+  +    ++p L k+g+ ++++D +G++ S+ + +   +d + +   + l  i + +l+ +++++vGh mG+ +a+++a+  +
     CCE27145.1  22 PILLFVHGVGSSHSFYSP--IIPSLVKKGHSCLAFDIPGSALSTYRGRG--SDVEAI-CGAALALIaVLKLDSRRVIVVGHAMGTIVASEMALYLN 112
                    689*****9998888888..99999999*******************99..888886.455555446**************************986 PP

                    GGEEEEEEESECSSCCHHHHHHHHH CS
  Abhydrolase_1  96 erVkalvllgaidpaaslieaqrqq 120
                        +++l+g+   ++s+  a+ ++
     CCE27145.1 113 P--LGIILIGP--MNPSPQLADVFA 133
                    6..69999999..555555555444 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.2e-05
                    HHCTHHHHSEEEEEEETTCSSSCH.HHHHHHHHC..HTS..EEEEEEETCSSSHHHHS CS
  Abhydrolase_1 204 lrelknvlaptlvisgtsDplvpp.kaledlaql..lpk..krlvvisdagHlafleg 256
                    ++   ++++p l+i+g++D+  p  +++  l+++       kr  v+ + gH+ ++e 
     CCE27145.1 195 YE---EATCPLLIIAGSDDNTSPMaGSQAILDSWgvA-AelKRMQVLRGVGHWHCIEA 248
                    44...599**************************962.44699**********98875 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0034       5.6      48     105 ..      83     135 ..      78     148 .. 0.72
   2 !    8.4   0.0    0.0011       1.8      81     144 ..     168     229 ..     150     252 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0034
                    HHHHC-STTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SGGS..TT.GGGCGC CS
  Ser_hydrolase  48 aaveaaeekvvlvAHSlgclavlhaaelqlakkvagalLVapadveeeaaklaelaef 105
                    a ++  +++v++v H +g +++ ++a     +   g++L+ p +++  ++ ++ +a++
     CCE27145.1  83 AVLKLDSRRVIVVGHAMGTIVASEMA--LYLN-PLGIILIGPMNPS--PQLADVFAAR 135
                    5566667899*************999..3333.3599999999985..4444445444 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0011
                    EEEEEEET--SGGS..TT.GGGCGCTTS-SSHHCCHCEEEEETTBTTC-HHHHHHHHHHCT-EE CS
  Ser_hydrolase  81 vagalLVapadveeeaaklaelaefaplpreklpfpslvvaSenDpyvsfeeaeelaeawgael 144
                    ++  lL   ++     +  ++++++++   e++  p l++a ++D+  +++ ++++  +wg+++
     CCE27145.1 168 IRSLLLAQSPAG--YSSLCSTIMNAQTPRYEEATCPLLIIAGSDDNTSPMAGSQAILDSWGVAA 229
                    444444444443..4566678899999999999****************************864 PP

>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.3   3.8e-05     0.062      97     133 ..      18      54 ..       7      72 .. 0.84
   2 ?    2.2   0.1     0.032        51     224     240 ..      86     102 ..      59     112 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
                  SS-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE CS
  PAF-AH_p_II  97 kekyPlivFsHGLgafRtlYsalcielAskGfvvaav 133
                  + + P+++F HG+g++ ++Ys +  +l  kG   +a 
   CCE27145.1  18 RANGPILLFVHGVGSSHSFYSPIIPSLVKKGHSCLAF 54 
                  5667********************9999999877776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.032
                  -EEEEEEEEEEETHHHH CS
  PAF-AH_p_II 224 nldtskvaviGHsFGgA 240
                  +ld  +v+v+GH+ G+ 
   CCE27145.1  86 KLDSRRVIVVGHAMGTI 102
                  59999*********975 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.63     1e+03       3      17 ..      20      34 ..      18      39 .. 0.83
   2 ?   13.6   0.1   2.6e-05     0.042      89     111 ..      88     110 ..      72     118 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.63
       PGAP1  3 sGipVlFvpGnagsy 17
                +G   lFv+G + s+
  CCE27145.1 20 NGPILLFVHGVGSSH 34
                677889****99887 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.6e-05
       PGAP1  89 eptsviliGHSmGGivaraaltl 111
                 + ++vi++GH mG iva  ++ +
  CCE27145.1  88 DSRRVIVVGHAMGTIVASEMALY 110
                 5789*************988765 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   9.8e-05      0.16      18     109 ..      22     109 ..      11     123 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.8e-05
  Chlorophyllase2  18 pvllflhGylllnslYsqlLkhiashgfivvapqlyk....vaeadakeiksaakvlnWlakgLesvlpeevepdlsklalsgHSrGgktafal 107
                      p+llf+hG+    s+Ys ++ ++   g+  +a  +      +    +++++++   +      L+  l   ++ d +++ ++gH  G+ +a ++
       CCE27145.1  22 PILLFVHGVGSSHSFYSPIIPSLVKKGHSCLAFDIPGsalsTYRGRGSDVEAICGAA------LA--LIAVLKLDSRRVIVVGHAMGTIVASEM 107
                      9*********************99999988887544422111111123444333222......22..333334555666666666666666666 PP

  Chlorophyllase2 108 al 109
                      al
       CCE27145.1 108 AL 109
                      65 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.013        21      15      28 ..      22      35 ..      16      48 .. 0.83
   2 ?    4.5   0.0     0.016        27     102     126 ..      87     111 ..      70     152 .. 0.86
   3 ?   -1.6   0.0       1.2   1.9e+03     156     203 ..     199     246 ..     171     257 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.013
                   EEEEEE--TT--SH CS
  Abhydrolase_2 15 avviflHGlGdsgh 28
                   ++++f+HG+G+s+ 
     CCE27145.1 22 PILLFVHGVGSSHS 35
                   689********985 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.016
                    --GGGEEEEEETHHHHHHHHHHHT- CS
  Abhydrolase_2 102 ipssriiigGFSqGaalalylaltl 126
                    ++s r+i++G  +G+++a + al l
     CCE27145.1  87 LDSRRVIVVGHAMGTIVASEMALYL 111
                    6899*************98887754 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.2
                    G-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--SS--H CS
  Abhydrolase_2 156 klpilqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaHside 203
                      p l i g++D++ p+a ++a       + +   +++++g++H  + 
     CCE27145.1 199 TCPLLIIAGSDDNTSPMAGSQAILDSWGVAAELKRMQVLRGVGHWHCI 246
                    458888889999999988888877777777777778888888887765 PP

>> DUF1057  Alpha/beta hydrolase of unknown function (DUF1057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.8e-05      0.14      95     135 ..      80     121 ..      18     126 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.8e-05
     DUF1057  95 alleelelk.gklillghsRGcenaLqlavtleahGlvlinp 135
                 al+  l+l+  ++i++gh+ G+  a  +a  l++ G++li p
  CCE27145.1  80 ALIAVLKLDsRRVIVVGHAMGTIVASEMALYLNPLGIILIGP 121
                 89999***9899***************************987 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00022      0.36       6      91 ..      27     115 ..      22     220 .. 0.65
   2 ?   -2.0   0.0       1.9   3.1e+03      44      62 ..     248     266 ..     234     269 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
                   E--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST..SHHHCTTCHHHH...HHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT CS
  Thioesterase   6 fppagGsasvfrslasklsdpvvevlavqlpgre..rdepplesieel...aaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqG 91 
                   ++++g s s+++ +  +l ++  + la   pg    +     ++ e++   a  +++ l+       + ++Gh +G ++A e+A  L   G
    CCE27145.1  27 VHGVGSSHSFYSPIIPSLVKKGHSCLAFDIPGSAlsTYRGRGSDVEAIcgaALALIAVLKLDSR--RVIVVGHAMGTIVASEMALYLNPLG 115
                   4444445556666666666665666666666666654444444555551103344444444444..499***************9986544 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.9
                   CTTCHHHHHHHHHHHHHHH CS
  Thioesterase  44 plesieelaaeyaealrqi 62 
                   ++++ e+l++e+a+ +++i
    CCE27145.1 248 AADEVEALVDEFAQGMKSI 266
                   5678999999999999887 PP

>> Asp2  Accessory Sec system GspB-transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00017      0.27     348     418 ..      83     157 ..      68     169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00017
        Asp2 348 eeLgfeeeqlilsGlSMGtfgalyYgaklnphaivvgKPlv...nlGt.iaaneklkrpeefetslDvlrklqge 418
                   L+++++ +i+ G  MGt  a   +  lnp +i++  P+    +l + +aa+ +l++ e+ e  +Dv  +++ +
  CCE27145.1  83 AVLKLDSRRVIVVGHAMGTIVASEMALYLNPLGIILIGPMNpspQLADvFAARGQLVQKEGMEGVVDVFLSVETG 157
                 679999****************************99888752224544247777777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2025.24
//
Query:       CCE27146.1  [L=302]
Description: related to hydroxyquinol-1,2-dioxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-47  161.0   0.1    2.8e-47  160.5   0.1    1.2  1  Dioxygenase_C    Dioxygenase
    9.9e-29   99.0   0.0    1.6e-28   98.4   0.0    1.3  1  Dioxygenase_N    Catechol dioxygenase N terminus
    0.00011   22.4   0.0    0.00067   19.9   0.0    2.3  2  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
     0.0086   16.5   0.0      0.016   15.6   0.0    1.4  1  DUF4198          Domain of unknown function (DUF4198)
  ------ inclusion threshold ------
       0.11   12.5   0.0        2.9    7.9   0.0    2.6  2  CarbopepD_reg_2  CarboxypepD_reg-like domain


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   0.1   7.7e-51   2.8e-47       1     181 [.     121     300 ..     121     301 .. 0.97

  Alignments for each domain:
  == domain 1  score: 160.5 bits;  conditional E-value: 7.7e-51
                    ---S--EET--EEESEEE---S--TT--EEEEEEEEE-T.TSSB-TT-EEEEE---TTS--TTS-TTS-SSTTTTEEEEE--TTSEEEEEEE---- CS
  Dioxygenase_C   1 iegPlyveeapededlarledkgeeegerlvlsGrvlde.aGkplagalvelWhanaeGrYshkkeeheapelnlrgriltdeeGryrirtikPap 95 
                    i gP++ +++p+ e+ ++    +   g++++++G+v++   Gkpla+a+v++W+  ++G Y++++++  + e+nlrg + td+eGry +  +kP+p
     CCE27146.1 121 ILGPFWRADTPHRENGTTIVFDKPSDGQVVYMHGKVINVhTGKPLANATVDVWQGSTNGLYEQQDPD--QREYNLRGIFHTDAEGRYAFYCLKPTP 214
                    679***********999999988999***********9637*************************9..99************************* PP

                    EE--TTSHHHHHHHHTT---EE-SEEEEEEE-TTB--EEEEEEETT-TTTTS-TT----TTTEE--EEE-SHS-.EEEEE--EE-- CS
  Dioxygenase_C  96 YpipndGptgklldalgrhawRPaHiHfsvsapghrklvTqlyfegdkyladdivsaakeeLiaeleesedeeekalelefdlvLd 181
                    Yp+p+dGp+gkll++++r  +RPaHiH++v a+gh+ l+Tq++ +  kyla+d v+a+keeL +e+  ++   + alele+d++L+
     CCE27146.1 215 YPVPTDGPAGKLLQMMDRPIYRPAHIHLMVQAEGHKPLTTQIFDKDCKYLANDSVFAVKEELTVEFVPRKGDAQAALELEYDVRLA 300
                    ***********************************************************************************996 PP

>> Dioxygenase_N  Catechol dioxygenase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.0   4.4e-32   1.6e-28       2      73 ..      40     111 ..      39     113 .. 0.96

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 4.4e-32
                    HHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH.....TT-HHHHHHHTTHHHHHHHHHHHHHHH CS
  Dioxygenase_N   2 pRlkeiverlvrhlhdfirevdlteeEwwaavdfLtrvGqisddkrqEfiLlsdvLGlehlvdaindakeag 73 
                    pRl+e++++l++hlhdf+rev+lt +Ew+a+v+ ++++Gq+sd+kr+E +L++d+LGle+lvd i+  ++a+
     CCE27146.1  40 PRLREVMASLIQHLHDFAREVQLTADEWMAGVQLINQAGQMSDQKRNEGQLMCDILGLESLVDDITFSAAAK 111
                    8****************************************************************9877776 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.9e-07   0.00067       3      52 ..     153     217 ..     152     222 .. 0.84
   2 ?   -2.2   0.0       1.4   5.2e+03      49      64 ..     239     254 ..     235     260 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.9e-07
  CarboxypepD_reg   3 sGrVtd.asgapiagatVtvtnadtg..............tvastttdadGafrlrglppgtysv 52 
                      +G+V + ++g+p+a+atV v + +t+               +    tda+G++++ +l+p++y v
       CCE27146.1 153 HGKVINvHTGKPLANATVDVWQGSTNglyeqqdpdqreynLRGIFHTDAEGRYAFYCLKPTPYPV 217
                      79***9559***********98777678888888887664566678****************976 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
  CarboxypepD_reg  49 tysvtvsapGyatatr 64 
                       + + v+a+G ++ t 
       CCE27146.1 239 HIHLMVQAEGHKPLTT 254
                      6778999999999985 PP

>> DUF4198  Domain of unknown function (DUF4198)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.6e-06     0.016     159     205 ..     160     215 ..     143     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.6e-06
     DUF4198 159 ldGkPlagaeveveyggt.....ryrdapdeikv....ktdadGvvtftlpkaGlw 205
                 + GkPla+a+v v+ g+t     ++  +++e+ +     tda+G+ +f + k+  +
  CCE27146.1 160 HTGKPLANATVDVWQGSTnglyeQQDPDQREYNLrgifHTDAEGRYAFYCLKPTPY 215
                 67*************99999865455555555558999********9998887665 PP

>> CarbopepD_reg_2  CarboxypepD_reg-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00082       2.9       2      27 ..     153     179 ..     152     185 .. 0.85
   2 ?    1.4   0.0     0.087   3.1e+02      29      46 ..     198     215 ..     192     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00082
  CarbopepD_reg_2   2 sGtVvdketkeplpgatVyv.kgtkkg 27 
                      +G+V++ +t++pl+ atV v +g+++g
       CCE27146.1 153 HGKVINVHTGKPLANATVDVwQGSTNG 179
                      6*****************764777777 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.087
  CarbopepD_reg_2  29 vTdenGnFelknlpagky 46 
                      +Td++G++ +  l++  y
       CCE27146.1 198 HTDAEGRYAFYCLKPTPY 215
                      6********987777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 2628.60
//
Query:       CCE27147.1  [L=304]
Description: uncharacterized protein CPUR_00619 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-12   47.9   0.0      9e-09   35.1   0.0    2.3  2  adh_short  short chain dehydrogenase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0     5e-13     9e-09       1     112 [.       6     123 ..       6     163 .. 0.84
   2 !   10.5   0.0   1.6e-05      0.29     141     186 ..     177     222 ..     172     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 5e-13
                 SEEEEESTTSHHHHHHHHHHHHT..T-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---SS--SSG CS
   adh_short   1 kvvlvtGassGIGraiakelake..Gakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkkl..gkldvLvnNAGitgsgpf 93 
                 k+++ tG ssG+G +  k+l+++   +k+++ +r   + ++++k+l  +    k+++ ++D+ d  ev+++ +k+ +++  +++d L   AG+ ++++ 
  CCE27147.1   6 KTIVATGLSSGLGFEALKQLLERktPFKIIFGARDTTTTNQAIKKLDFDraVHKIVVQPLDLCDLGEVKTFAQKVLEEVgkDNIDYLLLSAGMFKPATE 104
                 7899****************97622689999***************988767889************************7778**********999999 PP

                 GGCSHHHHHHHHHHHTHHH CS
   adh_short  94 selseeewervievNltgv 112
                 +e   ++w ++  vN ++ 
  CCE27147.1 105 EESWGSKWCEMAVVNHFSQ 123
                 9999999999999998875 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 1.6e-05
                 SB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS.SHH CS
   adh_short 141 vpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd.Tdm 186
                  + +g+++Y+++K+     ++ +++el+++  rv+av PG++  T++
  CCE27147.1 177 SGTEGFPVYASTKFLQLLSAHWWRRELEDQ-CRVIAVSPGMIPhTGL 222
                 577899*******98777778888888875.**********976765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2572.17
//
Query:       CCE27148.1  [L=293]
Description: uncharacterized protein CPUR_00620 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-10   39.0   0.0    4.4e-09   36.1   0.0    1.9  2  adh_short  short chain dehydrogenase
  ------ inclusion threshold ------
      0.073   12.0   0.1       0.11   11.4   0.1    1.2  1  AMH_N      Anti-Mullerian hormone, N terminal region


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0     5e-13   4.4e-09       2     137 ..       4     147 ..       3     157 .. 0.87
   2 ?    0.7   0.0     0.035   3.1e+02     144     187 ..     169     212 ..     162     216 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 5e-13
                 EEEEESTTSHHHHHHHHHHH..HTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHH.....SSESEEEE---SS--S CS
   adh_short   2 vvlvtGassGIGraiakela..keGakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkkl.....gkldvLvnNAGitgsg 91 
                 +++ tG ssG+G +  k+l+  +e +++++ +r +++++e++k+l+ +    ++ ++++ ++d +ev+++ e+a + l      ++d L  NAGi +++
  CCE27148.1   4 TIVATGLSSGLGFEALKQLLhsEEPYTIIFGARDADTANEAIKKLNFDrlLHSVAVLPLELNDLSEVKTFSEQALETLgklgeTEIDYLLLNAGILKPA 102
                 6899**************983356788999***************98888899*************************66655578*********9999 PP

                 SGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEG CS
   adh_short  92 pfselseeewervievNltgvflltravlpamlkqssGrIvnvsSv 137
                 +  e   ++w +       +   l++++ ++++ + + rIv vsS+
  CCE27148.1 103 NEREPHTSKWCEAAVRTREAQHYLIHLLREKLV-ACQTRIVVVSSN 147
                 999999999888877777888888888777876.888899999986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.035
                 TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS.SHHH CS
   adh_short 144 agvaaYsAsKaavagltrslakelaptgirvnavaPGlvd.Tdma 187
                  g+++Y+ +K+     ++ ++++l+++   v+av PG++  T++ 
  CCE27148.1 169 DGLPVYTYTKFLQLLGAHWWSRQLRDQ-CHVVAVSPGMIPhTGLG 212
                 567778888876666666666666664.99********9877765 PP

>> AMH_N  Anti-Mullerian hormone, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.2e-05      0.11     285     355 ..      17      85 ..       8      89 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.2e-05
       AMH_N 285 eaLerLvnseepllllfpkgskavlqeksgewalegkllerlaarLqaaaaelrelpelqpaaeelLqrLl 355
                 eaL++L++seep  ++f + +  + +e   ++++ + ll+ +a  L  +++ l e+++++++a e L++L 
  CCE27148.1  17 EALKQLLHSEEPYTIIFGARDADTANEAIKKLNF-DRLLHSVAV-LPLELNDLSEVKTFSEQALETLGKLG 85 
                 89***************999999999999****9.899999976.99999**************9999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 1896.62
//
Query:       CCE27149.1  [L=356]
Description: related to plant dihydroflavonol-4-reductases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-20   73.4   0.0    3.5e-20   72.5   0.0    1.4  1  Epimerase       NAD dependent epimerase/dehydratase family
    1.5e-12   47.1   0.0    3.2e-12   46.1   0.0    1.5  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    2.6e-10   40.2   0.0    4.3e-10   39.5   0.0    1.4  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
    1.6e-09   37.3   0.0    2.5e-06   26.9   0.0    2.1  2  NAD_binding_4   Male sterility protein
    1.6e-06   28.2   0.0      4e-06   26.8   0.0    1.7  2  NAD_binding_10  NAD(P)H-binding
     0.0032   16.9   0.5      0.049   13.1   0.1    2.4  3  adh_short       short chain dehydrogenase
  ------ inclusion threshold ------
      0.017   14.2   0.1      0.022   13.9   0.1    1.2  1  RmlD_sub_bind   RmlD substrate binding domain
       0.17   12.0   0.1       0.27   11.3   0.1    1.4  1  DapB_N          Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   1.6e-23   3.5e-20       1     232 [.      15     270 ..      15     277 .. 0.79

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 1.6e-23
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlq 93 
                 ++VtGa+Gfi ++ + all+ gy v+g  r  ++ ++ +  +        +v  d+t +++ +++++   p a++hlAa  ++++++ +  d++   +q
  CCE27149.1  15 VVVTGANGFIAQHCISALLQTGYVVVGTVRTWHKVAQVKASHNshphldVVVVEDITSAQCYRDALAGLTPSAILHLAAPFHYNTNNFE-RDLMLPAVQ 112
                 68*************************999988877777777689999988999*************************8888876666.5777889** PP

                 HHHHHHHHHHHH.TCTEEEEEEE.GGGGTSCSS.SS.......BSTCSTTS--.........--SSHHHHHHHHHHHHHHHHHHHHT..-EEEEEEESE CS
   Epimerase  94 gtlnlleaarka.gvkrllflsS.sevYGkdae.qp.......keettltgpl.........kpnspYaaaKlageklveayaaqyg..lnaiilrlfn 171
                 g++ +leaa     v+r+++  S +++Y ++a   p       +      +pl            s+Y a+K+a+ek ++++  + +  ++ ++l ++ 
  CCE27149.1 113 GSTAILEAATHIkTVQRVVHTNSfACIYDASAGpCPektytsqDW-----SPLtyedgvnapDAPSAYRASKTAAEKAAWKFMSERNpsFDLVSLCPTM 206
                 ********98665899*************7776323332222111.....22232333443466789***************9998545********** PP

                 EESTTS-TTSTTSHHHHHHHHHHTTSSSEEEET..........TST-EEE..EEEHHHHHHHHHHHHHHHTT- CS
   Epimerase 172 lyGprngegevsrvipalirkilegkqevtllg..........dgtalRd..flyveDvaeaillvlehvdag 232
                 ++Gp+      s+  p +ir +++    +++++             + R   +++v+Dva+a++ +l  ++ag
  CCE27149.1 207 VFGPF-----LSGSKPTAIRDVNTSN--LVVWSvvssgkdraiP--PTRGpcWVDVRDVADAHVNALLVPEAG 270
                 ****9.....8888899999999965..8888877766666332..334233************999888776 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   1.4e-15   3.2e-12       1     228 [.      16     263 ..      16     266 .. 0.70

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 1.4e-15
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrlee..lkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegv..dvvihlaslvdvagkltedeimkvnvkG 95 
                 vvtG+ GF+ ++ +++L++++   + +vr   ++ + +  ++ s+ + + v+  D+t++++ ++al g   ++++hla+      +  e  +m   v+G
  CCE27149.1  16 VVTGANGFIAQHCISALLQTGYvvVGTVRTWHKVAQVKA-SHNSHPHLDVVVVEDITSAQCYRDALAGLtpSAILHLAAPFHYNTNNFERDLMLPAVQG 113
                 8********************976789999988877777.34444444448999*************974479******9999886666669999**** PP

   3Beta_HSD  96 Trnvleacvk.agvrvlvYtSsaevvgpnslg...eeilngdEele..yesl.....hqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyG 183
                    +lea+++ + v+++v+t s   +++ s g   e+   +++  +  ye         +ay  sK  aEk+  k      +n+  +  ++L p++++G
  CCE27149.1 114 STAILEAATHiKTVQRVVHTNSFACIYDASAGpcpEKTYTSQDWSPltYEDGvnapdAPSAYRASKTAAEKAAWKFMS--ERNP-SFDLVSLCPTMVFG 209
                 ******9987357*************99877633323333333222113322344447789*********99887655..4666.67778999****** PP

   3Beta_HSD 184 egdkllvpl.lkqlaklglal...fkigdeevlsd.....rvYvgNvawahilA 228
                 +  +  +p+ ++ +  ++l +   +++g+++++       +v v  va+ah+ A
  CCE27149.1 210 PFLSGSKPTaIRDVNTSNLVVwsvVSSGKDRAIPPtrgpcWVDVRDVADAHVNA 263
                 *87776665144455555444000444555554322222267777777777765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.9e-13   4.3e-10       2     129 ..      17     135 ..      16     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1.9e-13
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHHH CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPey 97 
                    +TG +Gfi ++ +  Ll+ gy v+g+vr   +++  + +h  ++p+ +      ++  D+t ++  +++la   p ++++LAA  h ++   +   
     CCE27149.1  17 VTGANGFIAQHCISALLQTGYVVVGTVRTWHKVAQVKASHN-SHPHLD-----VVVVEDITSAQCYRDALAGLTPSAILHLAAPFHYNTNNFE-RD 105
                    9**************************99888665555554.345433.....47788**************************998765444.46 PP

                    HHHHHTHHHHHHHHHHHHCT..TTSEEEEEEE CS
  GDP_Man_Dehyd  98 taevnvlGtlrLLeairalglekkvrfyqaSt 129
                     +   v G + +Lea+ +++     r++++ +
     CCE27149.1 106 LMLPAVQGSTAILEAATHIKTV--QRVVHTNS 135
                    6666799********9887643..34444433 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00046         1       1      30 [.      17      44 ..      17      59 .. 0.81
   2 !   26.9   0.0   1.1e-09   2.5e-06      90     219 ..      87     224 ..      82     254 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00046
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE- CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvR 30
                   +TGa GF++++ +  LL+t     ++  vR
     CCE27149.1 17 VTGANGFIAQHCISALLQTGY--VVVGTVR 44
                   7****************9976..4555555 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 1.1e-09
                    EEEE--SS-S.STT..SSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHH CS
  NAD_binding_4  90 viihsaAtvnfdep..ykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeekldederaklkglpntYeqsKal 182
                    +i+h aA  +++ +   ++l+ + v+G   +le a+ +k  + ++h  + a++++++ g   ek+y +++ +  ++ed   +  + p +Y  sK +
     CCE27149.1  87 AILHLAAPFHYNTNnfERDLMLPAVQGSTAILEAATHIKTVQRVVHTNSfACIYDASAGPCPEKTYTSQDWSPLTYEDGV-NAPDAPSAYRASKTA 181
                    79*****999887511567****************************999****************98887777777765.5678899******** PP

                    HHHHHHHHHHHH---...EEEEEE-EEE-....-SSST---TTS CS
  NAD_binding_4 183 aEklvrearrrsglp...vvivRpsiitg....esktGwingsd 219
                    aEk   + +++ + p   +v + p+++ g     sk+ +i   +
     CCE27149.1 182 AEKAAWKFMSERN-PsfdLVSLCPTMVFGpflsGSKPTAIRDVN 224
                    ***9998876533.222256667777777666655555555555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.8e-09     4e-06       1     111 [.      19     149 ..      19     205 .. 0.75
   2 ?   -1.7   0.0         1   2.3e+03      77     101 ..     242     282 ..     215     302 .. 0.50

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.8e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH....CTTTCEEEE-.-TT-CCHHHHHHTT-S..EEEES---TCC...HHHH........ CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele....aeeglevveg.dvtdvedlaealkgad..aVvsalggggk...deeg........ 77 
                     GA+G ++++ ++ ll+  g+ v+  vR+ +k+a+++    ++++l+vv++ d+t+++  ++al+g    a++  +++ +    +           
      CCE27149.1  19 GANGFIAQHCISALLQT-GYVVVGTVRTWHKVAQVKashnSHPHLDVVVVeDITSAQCYRDALAGLTpsAILHLAAPFHYntnN--Ferdlmlpa 110
                     9****************.5*********999998776555789999877549*************9775665555332222230..234456666 PP

                     ...HHHHHHHHHH.CT--EEEEEEE.TTTTSGCGCHHHH CS
  NAD_binding_10  78 ...aknivdaake.agvkRfvlvsa.igvgdevpgefge 111
                          +i++aa   + v+R+v   + ++++d ++g+ +e
      CCE27149.1 111 vqgSTAILEAATHiKTVQRVVHTNSfACIYDASAGPCPE 149
                     66688888888763679**99887635678877776554 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
                     H..............HHHHHHH..HHHCT--EEEEEEETTT CS
  NAD_binding_10  77 g..............aknivda..akeagvkRfvlvsaigv 101
                     +              a++ v+a  + eag  R+ l++++ +
      CCE27149.1 242 IpptrgpcwvdvrdvADAHVNAllVPEAGGGRYMLCQGVYC 282
                     23333344444333344444442234555556555555555 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   2.2e-05     0.049       2      68 ..      14      80 ..      13      87 .. 0.89
   2 ?   -2.7   0.0       1.5   3.3e+03      97     113 ..     123     139 ..     112     143 .. 0.78
   3 ?    1.3   0.0     0.092   2.1e+02     143     181 ..     169     206 ..     163     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.2e-05
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHH CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealv 68
                +v+vtGa + I + +  +l++ G+ vv + r+  k+++v+++ +++    +++  D+t+++  ++++
  CCE27149.1 14 TVVVTGANGFIAQHCISALLQTGYVVVGTVRTWHKVAQVKASHNSHPHLDVVVVEDITSAQCYRDAL 80
                79******************************************99777888888999888776665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
                 SHHHHHHHHHHHTHHHH CS
   adh_short  97 seeewervievNltgvf 113
                   ++++rv+++N ++ +
  CCE27149.1 123 HIKTVQRVVHTNSFACI 139
                 45679999999998876 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.092
                 -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS CS
   adh_short 143 vagvaaYsAsKaavagltrslakelaptgirvnavaPGl 181
                     +aY AsK a ++ + ++  e +p+    ++++P +
  CCE27149.1 169 PDAPSAYRASKTAAEKAAWKFMSERNPS-FDLVSLCPTM 206
                 556689*******998887777777765.5666666655 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   9.9e-06     0.022       2      91 ..      14     123 ..      13     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.9e-06
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.....................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre.....................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaaya 76 
                    +++vtGanG ++++ + +l + g+ v+++ r+                       d+t a+  +++l+   p+++ ++AA         e+++   
     CCE27149.1  14 TVVVTGANGFIAQHCISALLQTGYVVVGTVRTwhkvaqvkashnshphldvvvVEDITSAQCYRDALAGLTPSAILHLAAPFHYNTNNFERDLMLP 109
                    589**************************9999****************999999************************97666665555555444 PP

                    HHTHHHHHHHHHHHH CS
  RmlD_sub_bind  77 vnaeavealAeaaaa 91 
                    + ++++ a+ eaa++
     CCE27149.1 110 A-VQGSTAILEAATH 123
                    3.4455555555554 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00012      0.27       2      84 ..      14      92 ..      13     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHHHH-SEEEE-S-HHHHHHHH CS
      DapB_N  2 kvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadvliDFTtpeavlenl 84
                 v+v+Ga+G + ++ ++a+ + +++ +v+ v + + ++ + +a+   +  +l+v v +d++++ +  d l  +T p+a+l+++
  CCE27149.1 14 TVVVTGANGFIAQHCISALLQ-TGYVVVGTVRTWH-KVAQVKAS-HNSHPHLDVVVVEDITSAQCYRDALAGLT-PSAILHLA 92
                59*******************.8999999998877.55555554.344459***************99999998.77776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2638.09
//
Query:       CCE27150.1  [L=617]
Description: uncharacterized protein CPUR_00622 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-58  197.2   0.1    5.1e-58  196.7   0.1    1.1  1  Fungal_trans_2  Fungal specific transcription factor domain
     0.0007   19.7  15.2     0.0012   18.9  15.2    1.4  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.7   0.1   5.7e-62   5.1e-58       2     372 ..     241     605 ..     240     612 .. 0.94

  Alignments for each domain:
  == domain 1  score: 196.7 bits;  conditional E-value: 5.7e-62
  Fungal_trans_2   2 lldyyldnvapllspvpessnpfrkvllplalsnkallhallalsafhlqskgpkdslereakrykslalkelqealaelsstlsrnekykdiLa 96 
                     ll++y + v+ +ls   ++ np+   llp+a+sn+ +lh++lalsa h+  + ++d   ++ + +ks+a + l   l ++++t+      +  L+
      CCE27150.1 241 LLNHYSTIVSSILSRRASTDNPYNGYLLPMAQSNDLVLHCILALSANHWRKL-QPDL-GDRGLLHKSKATQALAGLLPHVNKTSA-----DIALV 328
                     89***********************************************555.5554.9**************************.....99999 PP

  Fungal_trans_2  97 aiLllcsieissgdvsdwrvhLeaatsliksrggskasssslsskarfllrifayldilssttlgrgpsfpseeyekllenkkeesdsgldp.lm 190
                     + Lllc+ e ++g+++ w+ hL++a++l+ +++++  + +    + +fllr+  +ld  + t++ r p++ +e  e    ++++ + ++ d  ++
      CCE27150.1 329 SSLLLCMTELFDGTSEGWKLHLKGAKRLLVTLRKQ--QGDVMTGHYKFLLRLARFLDSAATTSTCRPPLMGDEAAEAQALDSWNATPDEEDLaVY 421
                     99*******************************99..7888889*****************************99999999777777776668** PP

  Fungal_trans_2 191 GcsnslilliseisrLarekrsarkdseleplsileeaseleqrllswkprssdlepdldeterasslskdltelfrlaaliylyrlvlglppss 285
                     G++++l++l  +++ La  + ++ ++   ++ +++++a e+e+r+++w+ + +  +   ++ ++ +++ ++ t +f +a ++ l++ v g + ++
      CCE27150.1 422 GIPKELFHLVDRVNTLAELRSTRVDQ--ASEAAFRRHAVEIEHRINNWSYEFGGVSGATSTLNEFNDDILNATLAFEYAIRLRLHQIVEGYELTD 514
                     *****************999999888..***************************99999999999999888999******************** PP

  Fungal_trans_2 286 pevqelvkkllellellp.sspvaiasLlWplFiaGceavdeddRdfvrrrleele.qsrlgnvrrarqvleevWrrrddgee...kidWrd 372
                     p+v + v+ +le++++++  sp+ ++++l+pl +aG ++   ++R  +++rl  +e   ++g + +ar+++e vW+rrd++e     ++W  
      CCE27150.1 515 PRVGKYVDGILECIQKIRyGSPL-ESCILFPLVMAGGSCWKLEHRVIIQDRLLVMErTCGFGYIYNARDLVERVWARRDQSEGtgaVVNWAR 605
                     ******************77777.********************************99999******************8777777777854 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9  15.2   1.4e-07    0.0012       1      31 [.      16      46 ..      16      54 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.4e-07
                SS-HHHHHCT---STSSSS-HHHHHCTHHHC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCt 31
                ++C  C+++K KCd+ kP C+ C++l l+C 
  CCE27150.1 16 TGCLMCKRRKKKCDEIKPRCGDCRRLCLDCA 46
                58****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4712.00
//
Query:       CCE27151.1  [L=408]
Description: probable arginosuccinate synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-145  485.0   0.0   2.3e-145  484.8   0.0    1.0  1  Arginosuc_synth  Arginosuccinate synthase


Domain annotation for each model (and alignments):
>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  484.8   0.0  1.3e-149  2.3e-145       1     387 [.       9     397 ..       9     398 .. 0.98

  Alignments for each domain:
  == domain 1  score: 484.8 bits;  conditional E-value: 1.3e-149
  Arginosuc_synth   1 vLaysGGlDtsviikllkeklgeeviavavdvGqeeedldevkekalklgavksvvvDakeefvedyifpaikanalYedrYllgtalaRPlia 94 
                      +LaysGGlDts i+++l e+       ++++vGqe ed  +v++kal++ga k+++ D ++ fv++ +++a++ na+Yed+Yllgt+laRP+ia
       CCE27151.1   9 CLAYSGGLDTSTILAWLLEQH-----CYLANVGQE-EDWAAVEKKALQIGASKMIIDDLQKVFVDELCWKAVQCNAIYEDQYLLGTSLARPVIA 96 
                      79*******************.....99*******.********************************************************** PP

  Arginosuc_synth  95 kklvevakkegaeavahGctGkGnDqvRfevsirslaPdlkviaPvRelelt.....ReeeieyakekgipvevtkkkpysiDenllgrsieag 183
                      + ++++a+keg++ v+hGctGkGnDqvRfe++  + +P +kviaP+R++ ++     R++ ++ya+ekgipv +tk+kpys+D+nl++ s+eag
       CCE27151.1  97 RGMMKAAEKEGCDFVSHGCTGKGNDQVRFELAYLTINPAIKVIAPWRDPLFYqrfqgRNDLLDYAAEKGIPVTSTKAKPYSMDDNLAHCSYEAG 190
                      **************************************************99999*************************************** PP

  Arginosuc_synth 184 iLedpknappediyeltkdpakapdepeeveiefekGvPvald...geelsvlelieklneiagkhGvGRiDivedRlvglksReiYeapaalv 274
                      +Ledp+++pped+++ t +p kapd+p +++++fekG+Pv++     + ++ lel++ ln ++++hG+GR+Dive+R++glksR++Y+ pa ++
       CCE27151.1 191 MLEDPNVTPPEDMWTRTVSPLKAPDTPLDITVHFEKGLPVKVVtpqKTVTESLELFNLLNALGKEHGIGRVDIVENRFIGLKSRGCYDSPAMTI 284
                      *****************************************98552333455****************************************** PP

  Arginosuc_synth 275 LikahkdlekltlerevakfkkiveekyaelvYkGlwfsPlkealdafiektqervtGtvrvklfkGsvvvlgReseeslYdeelasydeedef 368
                      L+ ah  +e l+l+ +v+ +++ ++++++el+Y+Gl+fsP+++ l+  ++ +q+rv+G+vr++l+kG+++vlgR+s+e+lY+ee as+d+ ++f
       CCE27151.1 285 LRLAHISIEGLVLDGRVRSLRDNLSKQWSELLYNGLYFSPERAFLQPSLDFSQQRVNGEVRLQLYKGNAYVLGRTSNEKLYSEEDASMDSLTTF 378
                      ********************************************************************************************** PP

  Arginosuc_synth 369 dqkeaeGfikihglqakly 387
                      d++e++Gfi+i++++ k+y
       CCE27151.1 379 DPSETSGFITINAIRLKKY 397
                      ****************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 3360.38
//
Query:       CCE27152.1  [L=371]
Description: related to esterase/lipase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-45  154.0   0.0      5e-44  150.7   0.0    2.0  1  Abhydrolase_3  alpha/beta hydrolase fold
    8.2e-07   28.3   0.1    2.5e-06   26.7   0.1    1.6  1  COesterase     Carboxylesterase family
    8.8e-06   26.5   1.2    1.3e-05   26.0   1.2    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7   0.0   8.4e-48     5e-44       3     210 ..     105     345 ..     103     346 .. 0.88

  Alignments for each domain:
  == domain 1  score: 150.7 bits;  conditional E-value: 8.4e-48
                    EE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHH.HHTETTCEEEEEEETHHHHHHHHHHHHHHHTT- CS
  Abhydrolase_3   3 yfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqaw.elgadpsrivlaGdSaGGnlaaavalrardege 97 
                     fHGGG+ lg+ldt+ ++c+++++++++vv+ + Yrl Peh fP  + d++aal++++++ + +++++p+ri l+G SaGG +a+++ + ard+  
     CCE27152.1 105 DFHGGGWGLGDLDTEAHICQHICNKANVVVIDIAYRLVPEHAFPVGITDSFAALQYIHAHGStRFNIQPERISLGGVSAGGCIALVLGHLARDHC- 199
                    69***********************************************************99******************************93. PP

                    --...EEEEEEESE-SST....SSTTSHHHHHCHHTTTSSSSCHHHHHHHHHH....HSS.GGGGGST.....................TTSGGGC CS
  Abhydrolase_3  98 pk...vagqvliyPvtdl....ertesesikkaeeladgplltraaldlfwrl....ylp.eadrddp.....................lasplla 160
                    p+   ++ +++  Pv+d     ++  ++ + + +e++++p+l+ a+l++f +l     lp  +++++p                      a+ l a
     CCE27152.1 200 PEripLRLIAVGTPVVDDlsryASAGESPFLSMQENEHAPTLNWARLAWFDKLkwssLLPsSSSLSSPesrnqdeveremqaarakvgwFANLLEA 295
                    33455*********77767995455555555666779999**999999885553332666688888888889999999999999999966666666 PP

                    S-SST---EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 161 edlsglpptlvvvaefDplrdegeayaerlraagvevelieyegmvHgfa 210
                    +++++lp+t++++a+ Dplrdege+y + l ++gvev++++++g++H f+
     CCE27152.1 296 PNFKDLPKTVLYTAGADPLRDEGERYGRLLVENGVEVTMKRFPGVPHPFM 345
                    79*********************************************997 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   4.1e-10   2.5e-06      90     199 ..      89     188 ..      77     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 4.1e-10
                 EEEEEESSSSSTTSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGG.GGTEEEE CS
  COesterase  90 LnvytPkekkeakkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIa.sFGGdpe 185
                 + vy P+    +    PV + +hGgg   g+  +  + +++++++ nv+v+ i YRl +         e    vG+ D  +AL++++ + +  F+  pe
  CCE27152.1  89 IRVYEPD----SPGPWPVHIDFHGGGWGLGDLDTeaHICQHICNKANVVVIDIAYRLVP---------EHAFPVGITDSFAALQYIHAHGStRFNIQPE 174
                 6688874....34667**************997667999*****************975.........334449*************996527****** PP

                 EEEEEEETHHHHHH CS
  COesterase 186 rvtlfGesAGaasv 199
                 r+ l G sAG+ ++
  CCE27152.1 175 RISLGGVSAGGCIA 188
                 ***********775 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   1.2   2.1e-09   1.3e-05      39     213 ..     147     348 ..      65     356 .. 0.56

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.1e-09
                    S-GGCS--HHHCHHHHHHHCCTT..........TTSEEEEEETCHHHHHHHHHHCC..........EEEEES-.....----TTT.......S--- CS
  Abhydrolase_6  39 rsdpppldledladlaalldelaa........gggpvvlvGHSlGGalalaaapla........lvvgvlldppp...talpagl.......laaa 108
                    ++ +  +++++ +++ +      a        ++ ++ l G S GG +al +++la        +++ +++ +p+   ++            +   
     CCE27152.1 147 FPVGITDSFAA-LQYIH------AhgstrfniQPERISLGGVSAGGCIALVLGHLArdhcperiPLRLIAVGTPVvddLS----RyasagesPFLS 231
                    22222233333.44433......13334557899*************999999999777777653333777775544322....133222232222 PP

                    -TTHH.HHHHTT-CCCCHCCH......S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTT....CCHHTT-TTGCEEECTT-C..HHHHCHHCCC CS
  Abhydrolase_6 109 lelll.allallrllawlsre......plprlfladedadaawrarlarlaallaglgllp....aaawadlpvpllvlggeDp..lvprllerll 191
                    ++  + a++ + ++law+ +       p + ++ ++e+  +   +  ++++a +a++g+++    a++++dlp ++l  +g+Dp     + + rll
     CCE27152.1 232 MQENEhAPTLNWARLAWFDKLkwssllPSSSSLSSPES--RNQDEVEREMQAARAKVGWFAnlleAPNFKDLPKTVLYTAGADPlrDEGERYGRLL 325
                    22222233334444566633345543333337777777..555555555555555444332223388*********76589999773334477777 PP

                    H..STTEEETCE...SSS.-HHHHS CS
  Abhydrolase_6 192 a..qagarlpvvlpgaGH.lphlee 213
                    +     +++ + +pg  H ++h+ +
     CCE27152.1 326 VenGVEVTM-KRFPGVPHpFMHM-D 348
                    744333444.9999999987777.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3029.58
//
Query:       CCE27153.1  [L=684]
Description: uncharacterized protein CPUR_00625 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.42   10.8   2.8        1.3    9.2   2.8    1.8  1  DUF3099   Protein of unknown function (DUF3099)


Domain annotation for each model (and alignments):
>> DUF3099  Protein of unknown function (DUF3099)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.8   7.1e-05       1.3      27      64 ..      50      88 ..      47      91 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 7.1e-05
     DUF3099 27 Rvvclilavvlvsv.engwlalvllvlavvLPwvAVvlA 64
                R++  +l  + v + ++ w++ ++l++a++LP vA + A
  CCE27153.1 50 RILYYVLISACVLArKAEWIKNACLAAALLLPAVASLHA 88
                666666666666687999*****************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 5036.93
//
Query:       CCE27154.1  [L=743]
Description: uncharacterized protein CPUR_00626 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-11   42.2  20.6    4.3e-07   29.6   8.7    2.3  2  ArsB      Arsenical pump membrane protein
    1.4e-06   27.8  28.5    1.5e-05   24.3  28.5    2.9  1  CitMHS    Citrate transporter


Domain annotation for each model (and alignments):
>> ArsB  Arsenical pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   8.7   4.8e-11   4.3e-07      55     206 ..     128     281 ..      97     296 .. 0.78
   2 !   17.9   3.9   1.7e-07    0.0015     271     397 ..     567     705 ..     560     729 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 4.8e-11
        ArsB  55 tlafvaiilislildnigffewaalhmakaakgygvrmfvyvsllgaivaalfandgaaliltpivlamvralhfneklvfpf.iiasgf.iadttslp 151
                  + f+++  i++ +d  g++ + a+++ +     g r+f  + ++  iv +++ nd   l  t  +  m r      ++v p   i s f ia+ +s  
  CCE27154.1 128 MVFFITLAYIAISIDASGLIRYLAFRILQWGGKVGHRLFFLLYMFFFIVGSFIGNDPIILSGTAFLSYMTRV---SSNIVHPRaWIHSQFaIANIASAI 223
                 44567777788889********************************************99999999999885...56778874235565549******* PP

        ArsB 152 fvvsnlvnivsadyfhitfidyasrmvvpylfslla.siivlylffrk.s.ipkrydl 206
                 +v sn  n+v a  f+i fi+y++ m+vp +++ +     +ly++f + s ip    +
  CCE27154.1 224 LVSSNPTNLVLAGAFQIRFINYTANMIVPVVVTAVVlFPFLLYIVFANeSlIPSSIKM 281
                 *****************************98865541446778777541235655555 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.7e-07
        ArsB 271 kvvkeapwaivffsigmyvvvygvrnagltdvlsdviqaaadqglfagti.gmgfiaailssim.nnlptvmi.....da.laia...gtdthgmmrea 358
                  vv   p+a+v f+  m+++v  +   g   v++   +    +    g+i gmgf++++l +    n+ t ++     ++  ai     td       a
  CCE27154.1 567 AVVLHLPFALVPFAFTMFILVQALATKGWIPVFAYGWDHWVRKTGTIGAIgGMGFLSTVLCNFAgTNIGTTILlsrviQTwQAINtqnQTDISDRTFWA 665
                 588999****************************999887766666666637********987535666544311111221344311145666666779 PP

        ArsB 359 liyanvigsdlgp.kitpigslatllwlhvlshkgmkisw 397
                  +y+  ig + g   ++   sla llw  +ls+k +++  
  CCE27154.1 666 TVYSMAIGVNYGAfSVAFSASLAGLLWQDILSRKHIHVQG 705
                 99*********983567779**************998864 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3  28.5   1.7e-09   1.5e-05      25     284 ..     108     649 ..      81     667 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.7e-09
                 xxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  25 tieealsgiaspii...........llllgamiigaaleetGlfdrlaakllrlaggkrd.llvllvlltallsafvsndgvvlimipivlslakrlkk 111
                 +  e    +  +++           ++++ +  i+  ++ +Gl+++la ++l+++g+    l++ll ++ +++++f+ nd+ +++ + ++ls + r++ 
  CCE27154.1 108 GRRE----VHDGTVgadnispidimVFFITLAYIAISIDASGLIRYLAFRILQWGGKVGHrLFFLLYMFFFIVGSFIGNDP-IILSGTAFLSYMTRVSS 201
                 3333....33333344444555555999999**********************************************9999.66677777777777555 PP

                 xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.................... RF
      CitMHS 112 lppl...lliplalaaniggaltpiGtpttraa.....arpglslpnllllalllvgl.lplvllfmfgvalalpvnap.................... 181
                 + +     +     +ani +a++   +pt ++       r++++  n+++++++ +++ +p++l+++f++   +p  +                     
  CCE27154.1 202 NIVHpraWIHSQFAIANIASAILVSSNPTNLVLagafqIRFINYTANMIVPVVVTAVVlFPFLLYIVFANESLIPSSIKmhelppelrakkpvnpniph 300
                 5555776445566678999999999***88888999999999999999997776655515555555455544444444488999999777777777777 PP

                 ................................................................................................... RF
      CitMHS 182 ................................................................................................... 181
                                                                                                                    
  CCE27154.1 301 argqleeeenlgaegdeqgqllsleeimnpfldkggaafggiimaatlitvlvinavsagtdphpvfwvtlpaafvmfcwdlgfgwyhreetrqiarrg 399
                 777777777777777666666666666666666666666666666555555555555555555555555555555555555555555555555555555 PP

                 xxxxxxxxxxxxxxxxxxx................................................................................ RF
      CitMHS 182 kvkkqkaiieaiarsllpv................................................................................ 200
                 +                                                                                                  
  CCE27154.1 400 R-----------------Leienaraekamreeeqkhiptveassgdgtsfelkdrsrmksasgsqghhgssmpppptilvsentdgtaiisssssesa 481
                 0.................055555555555555555555566666666777777777777777777777777777777777777777777777777777 PP

                 .....................................................................................xxxxxxxxxxxxxx RF
      CitMHS 201 .....................................................................................atilllaykkveWs 214
                                                                                                      a++      + ++ 
  CCE27154.1 482 qshraidgardetsggekavavaqsdeqdgnvsasptpdkpvkstcqavddaellafqphdgrttleslskdcfrwcqetfptaaAVV-----LHLPFA 575
                 7788888888888889988888888888888888888888889888888888888888888888888888888888999999974333.....589*** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 215 vlllfaGvfllvgaleqtGileala....dllgaggplvalalvlgliallsafisnvavaalmapialgmapa 284
                 ++ ++  +f+lv+al   G +  +a    +++ ++g + a+  + +l+++l +f +++  +++++  ++++ +a
  CCE27154.1 576 LVPFAFTMFILVQALATKGWIPVFAygwdHWVRKTGTIGAIGGMGFLSTVLCNFAGTNIGTTILLSRVIQTWQA 649
                 *******************7777763333444324666776666777777888888777777777777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 5616.09
//
Query:       CCE27155.1  [L=1361]
Description: related to A.gambiae ATP-binding-cassette protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-50  170.8   0.0    5.7e-25   88.4   0.0    2.4  2  ABC_tran        ABC transporter
    2.1e-46  158.0  32.0      2e-27   96.0   7.0    3.0  3  ABC2_membrane   ABC-2 type transporter
    1.2e-15   58.1   9.9     0.0034   17.2   0.4    4.3  4  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    1.2e-08   35.7   2.0     0.0002   21.9   0.1    2.2  2  AAA_23          AAA domain
    3.6e-08   33.5   0.9     0.0014   18.6   0.2    2.3  2  RsgA_GTPase     RsgA GTPase
    5.2e-08   32.5   3.3     0.0035   17.0   0.5    2.7  2  AAA_29          P-loop containing region of AAA domain
    7.3e-08   32.1   0.5      0.044   13.2   0.1    4.0  3  SMC_N           RecF/RecN/SMC N terminal domain
    8.9e-08   32.5   0.1     0.0071   16.6   0.1    3.3  3  AAA_22          AAA domain
    9.4e-08   32.6   3.5     0.0011   19.4   0.1    2.9  2  AAA_16          AAA ATPase domain
    4.9e-07   29.8   0.1     0.0062   16.5   0.1    2.5  2  NACHT           NACHT domain
    5.5e-07   30.0   0.9     0.0001   22.6   0.2    2.5  2  AAA_19          AAA domain
    1.9e-06   28.2   1.0     0.0052   17.0   0.2    2.5  2  AAA_28          AAA domain
    1.2e-05   25.1   0.4      0.016   14.9   0.1    2.5  2  AAA_30          AAA domain
    4.9e-05   23.7   0.2       0.23   11.9   0.0    2.7  2  RNA_helicase    RNA helicase
    5.9e-05   22.7   0.5       0.36   10.4   0.0    2.5  2  AAA_25          AAA domain
     0.0001   22.2   1.7        2.1    8.0   0.1    3.1  3  AAA_15          AAA ATPase domain
    0.00015   21.0   0.6       0.12   11.4   0.1    2.2  2  T2SSE           Type II/IV secretion system protein
     0.0007   19.6   0.1        1.2    9.0   0.0    2.3  2  ATPase_2        ATPase domain predominantly from Archaea
    0.00074   18.9   1.2       0.11   11.8   0.2    2.4  2  FtsK_SpoIIIE    FtsK/SpoIIIE family
     0.0011   19.2   0.5       0.22   11.7   0.0    2.5  2  AAA_33          AAA domain
     0.0014   18.7   3.9       0.12   12.5   0.4    2.5  2  MMR_HSR1        50S ribosome-binding GTPase
     0.0014   18.4   0.6       0.55    9.9   0.1    2.4  2  AAA_24          AAA domain
     0.0017   18.3   2.0      0.047   13.6   0.2    3.4  4  NTPase_1        NTPase
     0.0018   17.9   4.5       0.31   10.6   0.8    2.3  2  cobW            CobW/HypB/UreG, nucleotide-binding domain
     0.0027   18.3   0.2        1.8    9.1   0.1    2.4  2  AAA_18          AAA domain
     0.0048   16.7   0.5       0.88    9.3   0.1    2.9  2  ATP_bind_1      Conserved hypothetical ATP binding protein
     0.0051   17.0   0.7        3.5    7.9   0.1    2.5  2  Roc             Ras of Complex, Roc, domain of DAPkinase
     0.0063   16.7   1.1        4.5    7.6   0.1    3.7  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
  ------ inclusion threshold ------
       0.01   15.9   1.0          5    7.1   0.1    2.6  2  AAA_5           AAA domain (dynein-related subfamily)
       0.01   14.7   0.8       0.35    9.6   0.3    2.8  3  ABC_ATPase      Predicted ATPase of the ABC class
      0.011   15.7   0.9       0.64    9.9   0.3    2.4  2  MobB            Molybdopterin guanine dinucleotide synthesis 
      0.015   14.7   2.5       0.31   10.5   0.1    2.4  2  Pox_A32         Poxvirus A32 protein
      0.019   15.4   0.6         11    6.4   0.0    3.0  2  AAA             ATPase family associated with various cellula
       0.02   14.7   0.7        7.7    6.2   0.0    3.8  4  IstB_IS21       IstB-like ATP binding protein
      0.033   13.4   0.4       0.64    9.2   0.0    2.1  2  DUF2075         Uncharacterized conserved protein (DUF2075)
      0.036   14.0   0.0       0.11   12.3   0.0    1.8  1  PDR_CDR         CDR ABC transporter
      0.044   13.2   0.6        2.9    7.3   0.0    2.3  2  PhoH            PhoH-like protein
      0.064   13.0   1.4        1.3    8.7   0.2    2.2  2  PRK             Phosphoribulokinase / Uridine kinase family
      0.067   12.6   1.4        6.9    6.1   0.3    2.3  2  SRPRB           Signal recognition particle receptor beta sub
      0.071   12.4   0.4        1.1    8.5   0.0    2.1  2  Septin          Septin
        0.1   11.8   0.5        3.4    6.9   0.1    2.3  2  Zeta_toxin      Zeta toxin
       0.12   12.8   1.4        1.4    9.3   0.1    2.4  2  AAA_17          AAA domain
       0.14   11.4   0.0        1.1    8.5   0.0    2.1  2  KAP_NTPase      KAP family P-loop domain
       0.25   11.4   0.4         15    5.6   0.2    2.5  2  AAA_14          AAA domain
       0.27   11.0   1.0         11    5.8   0.2    2.4  2  PduV-EutP       Ethanolamine utilisation - propanediol utilis
       0.33   10.9   0.7        6.5    6.8   0.1    2.3  2  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
       0.36   10.4   3.4        3.1    7.4   0.8    2.2  2  SRP54           SRP54-type protein, GTPase domain
       0.47   10.5   1.8         19    5.3   0.2    2.7  2  Dynamin_N       Dynamin family
        1.5    8.5   3.9         16    5.2   0.1    2.7  3  Cytidylate_kin  Cytidylate kinase
        2.2    8.3   4.7          3    7.9   1.8    2.4  2  DUF87           Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   1.6e-27   5.7e-25       1     136 [.      89     239 ..      89     240 .. 0.94
   2 !   80.1   0.0   5.8e-25   2.1e-22       1     137 []     717     875 ..     717     875 .. 0.95

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 1.6e-27
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................ 79 
                 l+ vs +lk+g+++ai+G +G+GK+tLl++la+  +     ++G+++++g+   +      + + +++ q++ l p+ltvre+                
  CCE27155.1  89 LHSVSADLKPGTVTAIIGGSGSGKTTLLNTLAERITSsrlsQKGTVTFNGRAGVH------SIRHSYVMQQDVLLPTLTVRETlhysaalrlpsstpqe 181
                 6889*****************************999889999****999877666......788899***************************99987 PP

                 HHHTCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++d+ +e+++ +lglke++dt++++ + +  SgG+k+rv++   ll +p++l+lDEpt
  CCE27155.1 182 TRDRVVEEVILELGLKECADTRIGNTQhRGCSGGEKRRVSIGVQLLANPSVLFLDEPT 239
                 77777******************9988899***************************9 PP

  == domain 2  score: 80.1 bits;  conditional E-value: 5.8e-25
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.......SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH............ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx............ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.......teGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren............ 79 
                 l+ ++ ++ +g + +i+G++G+GK++Ll+++a  l+         +G+++++g++ ++   ++ r+  +++ q+ + l p ltvre+            
  CCE27155.1 717 LQPLTTTFPAGVLNVILGPSGSGKTSLLNAMALRLRGsfgtkykPSGKLTFNGASPSD---SVIRSVCSYVCQDdDALLPSLTVRETlrfaaglrlpsf 812
                 56789999************************99888777777788999999999988...99***********99*********************** PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                     e+++++e++l ++glk+++++ ++s++ + +SgG+k+rv++   +l++p++lllDEpt+
  CCE27155.1 813 mstaEKTKRAEDVLMRMGLKDCANNMIGSDMiKGISGGEKRRVSIGIQVLTDPRVLLLDEPTS 875
                 ***9999*********************9999*****************************96 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   7.0   5.6e-30     2e-27       1     210 []     382     594 ..     382     594 .. 0.94
   2 ?   -0.4   0.8       1.8   6.4e+02      98     127 ..     626     655 ..     619     663 .. 0.84
   3 !   73.1   9.3   5.5e-23     2e-20       5     205 ..    1082    1281 ..    1078    1284 .. 0.92

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 5.6e-30
  ABC2_membrane   1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnr.pgllffsvlflafsaltsvapvferergvlerelvsplysls 94 
                    +q+ +l++r+++  +rdp lg+ +++++ +++++v g++f++lg +++++ +r  gl   + l   +++l+++   + ++ ++++re + +   + 
     CCE27155.1 382 RQLHVLTDRTLKVTYRDP-LGMTASILEAVVMGIVTGYIFFDLGrDQAGIRSReGGLYSVASLQGYLVLLFEI-YRMTIDIPTFDRESSDNCVNPL 475
                    5999**************.888**********************77777776658887777777777889999.********************** PP

  ABC2_membrane  95 ayvlakvlvelpvs.llqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpk 187
                    ++vl++ l+ lp   l + ++f ++vyf+ g++++  +ff+f++++l+ + +a++ ++   + +++f  as++a+l +++  + +G+fi id++p+
     CCE27155.1 476 PFVLSRRLARLPTEdLPVPFLFAVLVYFMAGFERTatKFFIFFAITLVNHYVAVTCAMTCVVAVRHFAGASLIANLAFTIQSVACGMFIQIDTIPV 571
                    ************983557777777************************************************************************ PP

  ABC2_membrane 188 wlqwiaylnPltyavealrsnlf 210
                    +++w+ +  + +ya++a+ +n+f
     CCE27155.1 572 YVRWLRWTAYNFYAFSAYAGNEF 594
                    *******************9997 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.8
  ABC2_membrane  98 lakvlvelpvsllqalifllivyflvgldl 127
                    + k +v  p+ +l++ ++l+i++ +vgl+l
     CCE27155.1 626 FPKNWVTRPIVILASYVVLFISLSVVGLHL 655
                    56777888999****************997 PP

  == domain 3  score: 73.1 bits;  conditional E-value: 5.5e-23
  ABC2_membrane    5 allkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedgl.nrpgllffsvlflafsaltsvapvferergvlerelvsplyslsayv 97  
                     +ll+r +++  r+p+l+ l+r++q   la++f + f+ +gn   ++ +r+g++     f+++ +l++v +v++ er v+ re++  +y + a++
     CCE27155.1 1082 LLLQRAVINTRRQPQLI-LARTMQVAGLAIIFALFFSPVGNDYFAVqTRMGFVQEVGAFYFVGMLQNV-AVYPPERDVFLREHDDSVYGVDAFL 1173
                     799***********999.9******************999655555488************7777777.************************* PP

  ABC2_membrane   98 lakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwl 189 
                     ++++l+e+p+ +l +l++ +++ + vgl+ +    f   ++++ ++ ++ slg+++ +l  +   a+++++++l++ +  +G++    +mp  +
     CCE27155.1 1174 ASYTLIEIPFEILSCLLYGVLATYAVGLPHTvpMLFVNTFACFGVVSCGESLGIIFNTLIGHTGFAVNIMGILLSVANSIAGVL--SIDMPDLF 1265
                     ********************999999****964448889999999999999*********************************..667888** PP

  ABC2_membrane  190 qwiaylnPltyaveal 205 
                     +++ yl+P++ya++a+
     CCE27155.1 1266 KAMNYLSPIRYAIRAM 1281
                     *************997 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   1.5    0.0018      0.65       1      19 [.     101     119 ..     101     149 .. 0.83
   2 !   17.0   0.0   1.1e-05    0.0039     197     295 ..     155     267 ..     144     272 .. 0.80
   3 !   17.2   0.4   9.4e-06    0.0034       1      43 [.     729     768 ..     729     773 .. 0.85
   4 !   16.6   0.0   1.5e-05    0.0055     252     297 ..     862     904 ..     844     907 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0018
      AAA_21   1 lnvliGpNgsGKSnLLdal 19 
                 ++++iG  gsGK++LL +l
  CCE27155.1 101 VTAIIGGSGSGKTTLLNTL 119
                 69**************999 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.1e-05
      AAA_21 197 ielsdlgegeeliasvderlrer.................gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrl 278
                   l +l+++e l++s+++rl+ +                 g+    +++ ++++ r  S G kr   + + ll+ +   s+l++DEp +gL+      l
  CCE27155.1 155 VLLPTLTVRETLHYSAALRLPSStpqetrdrvveevilelGLKECADTRIGNTQHRGCSGGEKRRVSIGVQLLANP---SVLFLDEPTTGLDATSAFQL 250
                 5566667777777777777777777777777777778888888888888899999999999999999999999988...******************** PP

      AAA_21 279 lellkelsrngaQvilt 295
                 ++ lk+l+++g  +i t
  CCE27155.1 251 VRTLKSLAQKGRTIITT 267
                 *********55555544 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 9.4e-06
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggir 43 
                 lnv+ Gp gsGK++LL a+ l    +r ++g+++++sg+ ++ 
  CCE27155.1 729 LNVILGPSGSGKTSLLNAMALR---LRGSFGTKYKPSGKLTFN 768
                 7******************765...889999999988887765 PP

  == domain 4  score: 16.6 bits;  conditional E-value: 1.5e-05
      AAA_21 252 lralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 l ++   ++ll+DEp +gL+    ++++e+l+ l+++g  vilt H
  CCE27155.1 862 LTDP---RVLLLDEPTSGLDAFTASSIMEVLEGLANEGRTVILTIH 904
                 3333...9***********************999999*****9955 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.3   0.00032      0.11      20      39 ..     100     119 ..      89     137 .. 0.87
   2 !   21.9   0.1   5.7e-07    0.0002      21      59 ..     729     767 ..     717     781 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00032
      AAA_23  20 gltlItGpNGaGKTTildAi 39 
                  +t+I+G  G+GKTT+l+ +
  CCE27155.1 100 TVTAIIGGSGSGKTTLLNTL 119
                 49***************865 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 5.7e-07
      AAA_23  21 ltlItGpNGaGKTTildAiklaLygetprlsrksgrgfe 59 
                 l++I Gp G+GKT++l+A+ l L g +++  + sg+  +
  CCE27155.1 729 LNVILGPSGSGKTSLLNAMALRLRGSFGTKYKPSGKLTF 767
                 8********************999998777776665444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   3.8e-06    0.0014      89     146 ..      88     150 ..      68     156 .. 0.73
   2 !   13.0   0.0    0.0002     0.072      99     120 ..     726     748 ..     673     760 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.8e-06
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT....-----S--------------SEEE CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpe....lelktgevseklgrGkhTTtavel 146
                   l+++++ lk   +++++G SG GK+tL+n+l+++       + g v  + + G h  +++ +
   CCE27155.1  88 LLHSVSADLKPgTVTAIIGGSGSGKTTLLNTLAERitssRLSQKGTVTFNGRAGVHSIRHSYV 150
                  46677788888799******************9872222234455666666667777777655 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.0002
                  T.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  99 d.ktsvlvGqSGvGKStLinall 120
                     + v++G+SG GK++L+na++
   CCE27155.1 726 AgVLNVILGPSGSGKTSLLNAMA 748
                  43678***************986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.5   9.8e-06    0.0035      15      43 ..      92     120 ..      87     141 .. 0.78
   2 !   15.3   0.1   3.3e-05     0.012      22      48 ..     726     753 ..     717     774 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.8e-06
      AAA_29  15 htieidlkgatlltGpsGsGKSTllDAiq 43 
                  ++++++  +t ++G sGsGK+Tll  ++
  CCE27155.1  92 VSADLKPGTVTAIIGGSGSGKTTLLNTLA 120
                 567778777***************98766 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.3e-05
      AAA_29  22 kg.atlltGpsGsGKSTllDAiqalLvp 48 
                 +g   ++ GpsGsGK++ll A++  L +
  CCE27155.1 726 AGvLNVILGPSGSGKTSLLNAMALRLRG 753
                 565679****************987754 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.014       5.1      17      44 ..      91     119 ..      84     137 .. 0.80
   2 ?    6.6   0.0     0.013       4.7     138     202 ..     213     273 ..     195     287 .. 0.83
   3 !   13.2   0.1   0.00012     0.044      25     197 ..     728     903 ..     714     918 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.014
                 EEEEETTSS.EEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
       SMC_N  17 tvilpfsks.ftaivGpNGSGKsnlldAi 44 
                 +v+ +++++ +tai+G  GSGK+ ll+ +
  CCE27155.1  91 SVSADLKPGtVTAIIGGSGSGKTTLLNTL 119
                 555555554289************99876 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.013
                 -HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 138 SgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreeml 202
                 SgGek  v++ +          ++ +lDe    LD++   ++++ lk+  ++   i++++++   
  CCE27155.1 213 SGGEKRRVSIGVQ----LLANPSVLFLDEPTTGLDATSAFQLVRTLKSLAQKGRTIITTIHQPRS 273
                 7888877776554....3444456679********************************998755 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 0.00012
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk.lkiekeevsisrrvkrkgeseykingkevtkke 122
                  +++i+Gp GSGK++ll+A+   L    +   + +   +l ++ ++ + +   +v  ++ ++d++ l+  + + +++  +     s +   +k+ + ++
  CCE27155.1 728 VLNVILGPSGSGKTSLLNAMALRLR--GSFGTKYKPSGKLTFNGASPSDSVIRSVCSYVCQDDDAlLPSLTVRETLRFAAGLRLPSFMSTAEKTKRAED 824
                 469*****************65543..444566666666776633333333334444333333331222222222222222222233333333333333 PP

                 HHHHHHCTT-STT........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-S CS
                 xxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivisl 197
                 v   +  ++   +         +SgGek  v++     iq      + llDe  + LD+   + + e+l+   ++   ++ ++
  CCE27155.1 825 VLMRMGLKDCANNmigsdmikGISGGEKRRVSIG----IQVLTDPRVLLLDEPTSGLDAFTASSIMEVLEGLANEGRTVILTI 903
                 3333322222222444444445666666665554....334444445566666666666666666666666666655555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1     2e-05    0.0071       5      69 ..      99     199 ..      94     273 .. 0.61
   2 !   11.3   0.0   0.00087      0.31       9      51 ..     731     773 ..     727     838 .. 0.71
   3 ?   -0.5   0.0       3.9   1.4e+03      45      83 ..     944     982 ..     931     996 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.............................erpevv....fvtlpsst...sskdllrellralgle 67 
                  ++++++G sG+GKTtll++l+e+ +     ++                               +e++       lpsst   +++ + +e+  +lgl+
  CCE27155.1  99 GTVTAIIGGSGSGKTTLLNTLAERITSSRLSQKgtvtfngragvhsirhsyvmqqdvllptlTVRETLhysaALRLPSSTpqeTRDRVVEEVILELGLK 197
                 6789********************976665555677777666666666666655555555553333333444555555555545555555555555555 PP

      AAA_22  68 lk 69 
                   
  CCE27155.1 198 EC 199
                 55 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00087
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst 51 
                 v+ G+sG+GKT ll+ ++ +l      ++++++ ++++ +s++
  CCE27155.1 731 VILGPSGSGKTSLLNAMALRLRGSFGTKYKPSGKLTFNGASPS 773
                 799****************995444444444444444444444 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 3.9
      AAA_22  45 vtlpsstsskdl.lrellralglelka..erlsseelleale 83 
                 +++p  t+++d+ l ++  +l++ + +  +r++ e   +++e
  CCE27155.1 944 YECPTHTNPADFaLDMITIDLQQVGREaqSRARVE---QLIE 982
                 89**********99999999998777733333333...3333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1     3e-06    0.0011      14      69 ..      87     149 ..      84     270 .. 0.59
   2 !   13.1   0.0   0.00026     0.093      27      51 ..     730     754 ..     713     830 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3e-06
      AAA_16  14 salervrsgrp..elvllsGesGvGKsslvrellralekd.....ggiflrgkcdqlesaipy 69 
                 ++l++v+++     ++ ++G sG+GK++l+++l+++++ +     g ++++g++  ++   +y
  CCE27155.1  87 NLLHSVSADLKpgTVTAIIGGSGSGKTTLLNTLAERITSSrlsqkGTVTFNGRAGVHSIRHSY 149
                 55666655555568999******************9999977775444466666555333333 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00026
      AAA_16  27 vllsGesGvGKsslvrellralekd 51 
                  ++ G+sG+GK+sl+++ + +l+++
  CCE27155.1 730 NVILGPSGSGKTSLLNAMALRLRGS 754
                 4699***********9999888877 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.7e-05    0.0062       2      38 ..     101     136 ..     100     144 .. 0.88
   2 !   10.7   0.0     0.001      0.38       4      32 ..     731     759 ..     729     801 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.7e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEE CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvF 38 
                 + ++ G +GsGKTtLl  la+ + +++l q+   + F
  CCE27155.1 101 VTAIIGGSGSGKTTLLNTLAERITSSRLSQK-GTVTF 136
                 5789***********************9997.45555 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.001
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqg 32 
                 ++ G++GsGKT Ll  +al ++ +   + 
  CCE27155.1 731 VILGPSGSGKTSLLNAMALRLRGSFGTKY 759
                 799**************999987655554 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.2   2.9e-07    0.0001       9     125 ..      98     254 ..      91     270 .. 0.67
   2 ?    5.3   0.0     0.064        23      14      51 ..     731     768 ..     720     775 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.9e-07
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrA.akelrerlaalgae........atTiHrlal..................... 77 
                 + +v ++++G G+GKT++l++  + + + +   + +   v+f+grA ++ +r +  +++++         +T+H+ a                      
  CCE27155.1  98 PGTVTAIIGGSGSGKTTLLNTLAERITSSR---LSQKGTVTFNGRAgVHSIRHSY-VMQQDvllptltvRETLHYSAAlrlpsstpqetrdrvveevil 192
                 567899**************9999888887...57999*******9567888888.7777799999999999998887777777777666666666666 PP

      AAA_19  78 .................ldfddlltealelle........eaeeekklqeeellivDE.fqdvd.elqyrLlkal 125
                                                          +   + l +  +l+ DE +  +d   +++L+++l
  CCE27155.1 193 elglkecadtrigntqhR-------------GcsggekrrVSIGVQLLANPSVLFLDEpTTGLDaTSAFQLVRTL 254
                 655544444443332221.............03333333211123344344466666633446666666666665 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.064
      AAA_19  14 lvtaGpGtGKTrvlkhivallvelggvkpeeillvaft 51 
                 +++++ G+GKT +l+++   l    g k ++   ++f+
  CCE27155.1 731 VILGPSGSGKTSLLNAMALRLRGSFGTKYKPSGKLTFN 768
                 678889********998777766666666666666665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   1.4e-05    0.0052       3      22 ..     103     122 ..     101     156 .. 0.80
   2 !    9.4   0.1    0.0032       1.2       3      22 ..     731     750 ..     729     761 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.4e-05
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                 +i+Gg+++GKTtll+ La+r
  CCE27155.1 103 AIIGGSGSGKTTLLNTLAER 122
                 79****************88 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0032
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                 vi+G++++GKT+ll+a+a r
  CCE27155.1 731 VILGPSGSGKTSLLNAMALR 750
                 8***************9954 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   4.5e-05     0.016      18      81 ..      99     170 ..      91     261 .. 0.77
   2 !    7.6   0.0    0.0077       2.8      19      39 ..     728     748 ..     712     776 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.5e-05
      AAA_30  18 drvavltGpAGtGKttalkalreaweaag......grviglA..ptgkaAkvLaeelgieastiakllkrlk 81 
                   v+++ G+ G+GKtt+l++l+e ++++        +  g A  ++ + + v+++++ +++ t+ + l+  +
  CCE27155.1  99 GTVTAIIGGSGSGKTTLLNTLAERITSSRlsqkgtVTFNGRAgvHSIRHSYVMQQDVLLPTLTVRETLHYSA 170
                 46999*****************99998866777442222333225556667777888888888888887666 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0077
      AAA_30  19 rvavltGpAGtGKttalkalr 39 
                  + v+ Gp G+GKt +l+a++
  CCE27155.1 728 VLNVILGPSGSGKTSLLNAMA 748
                 5899*************9986 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00064      0.23       3      50 ..     104     153 ..     102     159 .. 0.68
   2 !    9.0   0.0     0.005       1.8       2      32 ..     731     761 ..     730     774 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00064
  RNA_helicase   3 lyGpsgeGKStlakeLakallkklklkkkdsvys..rnpeddfwdgYt.gq 50 
                   + G sg GK+tl ++La++++++  ++k ++v +  r+  +++ ++Y  +q
    CCE27155.1 104 IIGGSGSGKTTLLNTLAERITSSRLSQK-GTVTFngRAGVHSIRHSYVmQQ 153
                   78*******************7774444.4444423444444556666455 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.005
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkd 32 
                   ++ Gpsg GK++l + +a +l +++++k k+
    CCE27155.1 731 VILGPSGSGKTSLLNAMALRLRGSFGTKYKP 761
                   589******************9999766654 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1    0.0014      0.52      19      59 ..      82     125 ..      67     141 .. 0.77
   2 !   10.4   0.0     0.001      0.36      30      57 ..     724     751 ..     703     805 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0014
      AAA_25  19 ppprrwlvkg...llpagelallaGapgtGKttlaldlalavat 59 
                  p+++ l++     l  g++++++G +g+GKttl+  la  +++
  CCE27155.1  82 TPCVKNLLHSvsaDLKPGTVTAIIGGSGSGKTTLLNTLAERITS 125
                 56666666653334678******************999988875 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.001
      AAA_25  30 lpagelallaGapgtGKttlaldlalav 57 
                  pag l+++ G++g+GKt l+  +al +
  CCE27155.1 724 FPAGVLNVILGPSGSGKTSLLNAMALRL 751
                 59*******************9999875 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1    0.0059       2.1      15      43 ..      90     119 ..      85     127 .. 0.88
   2 ?    5.8   0.0     0.026       9.3     323     363 ..     229     267 ..     225     271 .. 0.92
   3 ?    5.9   0.0     0.026       9.2      25      45 ..     729     749 ..     714     783 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0059
      AAA_15  15 kdveidlsee.ltvliGkNnsGKSsileal 43 
                  +v+ dl++  +t +iG  +sGK+++l+ l
  CCE27155.1  90 HSVSADLKPGtVTAIIGGSGSGKTTLLNTL 119
                 55788999989****************877 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.026
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitT 363
                 ++ +l+++EP + L      +l+++lk+la+++   +iitT
  CCE27155.1 229 NPSVLFLDEPTTGLDATSAFQLVRTLKSLAQKG--RTIITT 267
                 57799****************************..599998 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.026
      AAA_15  25 ltvliGkNnsGKSsilealdl 45 
                 l+v+ G+ +sGK+s+l+a+ l
  CCE27155.1 729 LNVILGPSGSGKTSLLNAMAL 749
                 89****************976 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00035      0.12     129     156 ..      99     126 ..      24     133 .. 0.73
   2 !    7.7   0.0    0.0044       1.6     104     150 ..     702     748 ..     650     754 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00035
       T2SSE 129 rglilvsGgTgsGKttllyallkeinks 156
                   +  + Gg gsGKttll++l + i +s
  CCE27155.1  99 GTVTAIIGGSGSGKTTLLNTLAERITSS 126
                 4555678**************9999876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0044
       T2SSE 104 tlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyall 150
                 + ++   +++ +++i + l +   +  l ++ G+ gsGKt ll+a+ 
  CCE27155.1 702 EKRNAWGKKMPQKTILQPLTTTFPAGVLNVILGPSGSGKTSLLNAMA 748
                 44444555566677777777777777788999************986 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0066       2.4      16      45 ..      95     124 ..      86     147 .. 0.86
   2 !    9.0   0.0    0.0033       1.2      22      44 ..     729     751 ..     723     759 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0066
    ATPase_2  16 erepneiyfiYGpegsGKtaLlkeiienle 45 
                 + +p ++  i G  gsGKt+Ll+ ++e+  
  CCE27155.1  95 DLKPGTVTAIIGGSGSGKTTLLNTLAERIT 124
                 567889999***************999875 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0033
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienl 44 
                   +i Gp gsGKt+Ll+ ++ +l
  CCE27155.1 729 LNVILGPSGSGKTSLLNAMALRL 751
                 579**************988776 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.2   0.00032      0.11      31      59 ..      92     119 ..      86     125 .. 0.90
   2 ?    5.5   0.0     0.027       9.6      43      60 ..     731     748 ..     711     752 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00032
                   EEEEGGGS-.SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  31 lvldlkkmashllvaGatgsGKStalntL 59 
                   + +dlk+ +  + ++G++gsGK+t lntL
    CCE27155.1  92 VSADLKPGT-VTAIIGGSGSGKTTLLNTL 119
                   678888888.999***************9 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.027
                   EEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  43 lvaGatgsGKStalntLi 60 
                   +++G +gsGK+  ln++ 
    CCE27155.1 731 VILGPSGSGKTSLLNAMA 748
                   79**************96 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00062      0.22       2      31 ..     102     131 ..     101     190 .. 0.83
   2 ?    5.2   0.1     0.059        21       3      20 ..     731     748 ..     729     758 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00062
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssd 31 
                 + ++G +GsGK+tl+  l+++ +  +ls+ 
  CCE27155.1 102 TAIIGGSGSGKTTLLNTLAERITSSRLSQK 131
                 5689***************99999999875 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.059
      AAA_33   3 llvGlpGsGKstlaerll 20 
                 ++ G++GsGK+ l+  ++
  CCE27155.1 731 VILGPSGSGKTSLLNAMA 748
                 578*********998876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.4   0.00033      0.12       3      34 ..     103     136 ..     101     152 .. 0.82
   2 ?    6.8   0.2      0.02       7.1       3      20 ..     731     748 ..     730     763 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00033
                 EEEESTTSSHHHHHHHHHTS..TEEESSSTTSSS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge..kaivsdkpgtTr 34 
                 ai+G + +GK+tL+n+l ++   ++ s+k  +T 
  CCE27155.1 103 AIIGGSGSGKTTLLNTLAERitSSRLSQKGTVTF 136
                 8*****************9875567777777775 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.02
                 EEEESTTSSHHHHHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinalt 20 
                 +i+G + +GK++L+na+ 
  CCE27155.1 731 VILGPSGSGKTSLLNAMA 748
                 699*************96 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1    0.0015      0.55       5      24 ..     102     121 ..      99     154 .. 0.79
   2 ?    6.2   0.1     0.021       7.4       6      22 ..     731     747 ..     727     761 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0015
      AAA_24   5 iliyGpsgiGKTtlakelgp 24 
                  +i+G sg+GKTtl+++l +
  CCE27155.1 102 TAIIGGSGSGKTTLLNTLAE 121
                 68**************9933 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.021
      AAA_24   6 liyGpsgiGKTtlakel 22 
                 +i Gpsg+GKT+l++ +
  CCE27155.1 731 VILGPSGSGKTSLLNAM 747
                 799**********9877 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   0.00013     0.047       4      48 ..     104     148 ..     101     154 .. 0.87
   2 ?   -1.6   0.0       6.4   2.3e+03     115     140 ..     251     275 ..     245     283 .. 0.76
   3 ?    1.0   0.0      0.96   3.5e+02       4      24 ..     732     752 ..     730     760 .. 0.83
   4 ?   -0.8   0.0       3.5   1.3e+03     113     143 ..     884     913 ..     862     917 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00013
                 EE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE-------EEE CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkssgvkvgGfyteevreggrrigFk 48 
                 i G +G+GKtTl++ ++e + ss ++ +G +t + r g + i  +
  CCE27155.1 104 IIGGSGSGKTTLLNTLAERITSSRLSQKGTVTFNGRAGVHSIRHS 148
                 7799****************************9999887766655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 6.4
                 HHHHHHHHTTTSEEEEE--SS--SHH CS
    NTPase_1 115 keaveevLksekpvlavihrrkdlal 140
                  ++++ + ++++ ++++ih++ ++++
  CCE27155.1 251 VRTLKSLAQKGRTIITTIHQP-RSEI 275
                 56778888899*********9.4444 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.96
                 EE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellk 24 
                 i Gp+G+GKt l++ ++  l+
  CCE27155.1 732 ILGPSGSGKTSLLNAMALRLR 752
                 67***********98887775 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 3.5
                 HHHHHHHHHHTTTSEEEEE--SS--SHHHHH CS
    NTPase_1 113 kfkeaveevLksekpvlavihrrkdlalvee 143
                 ++ e +e + ++++ v+ +ih++ +++l ++
  CCE27155.1 884 SIMEVLEGLANEGRTVILTIHQA-RSDLFKH 913
                 4455555666699*********9.6667665 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.8   0.00085      0.31       2      24 ..     101     123 ..     100     138 .. 0.81
   2 !    8.4   0.2    0.0041       1.5       3      21 ..     730     748 ..     728     756 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00085
                 EEEEEESTTCCHHHHHHHHHCT- CS
        cobW   2 vtvltGflGsGKTtLlnhllenr 24 
                 vt + G  GsGKTtLln+l e+ 
  CCE27155.1 101 VTAIIGGSGSGKTTLLNTLAERI 123
                 78899999**********98554 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0041
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                  v+ G+ GsGKT+Lln++ 
  CCE27155.1 730 NVILGPSGSGKTSLLNAMA 748
                 5899************986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0049       1.8       3      22 ..     104     123 ..     103     166 .. 0.74
   2 ?    6.7   0.0     0.028        10       3      24 ..     732     754 ..     731     800 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0049
      AAA_18   3 ltGtpGvGKttlakeLskrl 22 
                 + G +G+GKttl + L++r 
  CCE27155.1 104 IIGGSGSGKTTLLNTLAERI 123
                 7899*************995 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.028
      AAA_18   3 ltGtpGvGKttlakeLskrl.gf 24 
                 + G++G+GKt+l ++ + rl g+
  CCE27155.1 732 ILGPSGSGKTSLLNAMALRLrGS 754
                 89**********99988776555 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1    0.0025      0.88       1      23 [.     104     126 ..     104     132 .. 0.89
   2 ?    4.4   0.0     0.076        27       1      17 [.     732     748 ..     732     754 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0025
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelr 23 
                 ++G+ GsGKtt+ ++l+e ++++
  CCE27155.1 104 IIGGSGSGKTTLLNTLAERITSS 126
                 79***************998876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.076
  ATP_bind_1   1 vvGpaGsGKttfvgals 17 
                 ++Gp GsGKt++ +a++
  CCE27155.1 732 ILGPSGSGKTSLLNAMA 748
                 68***********9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0098       3.5       4      31 ..     104     131 ..     102     156 .. 0.76
   2 ?    7.0   0.0     0.018       6.5       3      19 ..     731     747 ..     730     767 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0098
                 EESSTTSSHHHHHHCHCT-CCC-EEETT CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsekekst 31 
                 ++G sg+GKt+ll+ + e+  s++ ++ 
  CCE27155.1 104 IIGGSGSGKTTLLNTLAERITSSRLSQK 131
                 89************99987776654444 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.018
                 EEESSTTSSHHHHHHCH CS
         Roc   3 vlvGdsgvGKtsllkrf 19 
                 v++G sg+GKtsll+ +
  CCE27155.1 731 VILGPSGSGKTSLLNAM 747
                 79************976 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.085        30      63      89 ..     229     255 ..     192     256 .. 0.81
   2 ?    7.6   0.1     0.012       4.5      62      89 ..     863     890 ..     833     891 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.085
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                 +++++fLDE   +lD++s+ +l+++l+
  CCE27155.1 229 NPSVLFLDEPTTGLDATSAFQLVRTLK 255
                 47899***********99999988876 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.012
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                 +++r+++LDE  s+lD+ ++++++e+le
  CCE27155.1 863 TDPRVLLLDEPTSGLDAFTASSIMEVLE 890
                 4699********************9986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1     0.014         5       4      26 ..     104     126 ..     102     142 .. 0.86
   2 ?    6.7   0.1     0.019       6.8       3      26 ..     731     754 ..     730     761 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.014
                 EE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5   4 LvGppGtgKselaerlaaalnre 26 
                 ++G +G+gK++l   la++++++
  CCE27155.1 104 IIGGSGSGKTTLLNTLAERITSS 126
                 69*****************9655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.019
                 EEE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5   3 lLvGppGtgKselaerlaaalnre 26 
                 +++Gp+G+gK++l   +a +l+ +
  CCE27155.1 731 VILGPSGSGKTSLLNAMALRLRGS 754
                 579************999888655 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   0.00097      0.35     243     266 ..      97     121 ..      93     126 .. 0.87
   2 ?    1.2   0.1      0.36   1.3e+02     243     265 ..     725     748 ..     722     751 .. 0.88
   3 ?   -0.5   0.0       1.1     4e+02     340     409 ..     864     936 ..     847     941 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00097
                 -SS.EEEEEE-TTSSHHHHHHHHHH CS
  ABC_ATPase 243 pkG.vtlIvGggfhGKsTLLeAlek 266
                 + G vt+I+Gg   GK+TLL+ l++
  CCE27155.1  97 KPGtVTAIIGGSGSGKTTLLNTLAE 121
                 6677*****************9976 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.36
                 -SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 243 pkG.vtlIvGggfhGKsTLLeAle 265
                 p G + +I G+   GK+ LL+A++
  CCE27155.1 725 PAGvLNVILGPSGSGKTSLLNAMA 748
                 7786789***************86 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.1
                 T-SEEEEEGGGS-HHHH---HHHHHH..S-GGG--.B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEE CS
  ABC_ATPase 340 gakllLiDEDtsAtNlmirDermqel..vskekep.itplvdrvrelykklgvstilvvggsgdyldvAdtvi 409
                 + ++lL+DE ts        + m+ l  +++e ++ i ++ +   +l k++g  ++l  gg   y ++A +++
  CCE27155.1 864 DPRVLLLDEPTSGLDAFTASSIMEVLegLANEGRTvILTIHQARSDLFKHFGNVLLLARGGHPVYAASAKRML 936
                 5689*******999998888888766333444444155555555667888888888888**999999998865 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3    0.0018      0.64       3      26 ..     103     126 ..     101     134 .. 0.85
   2 ?    3.8   0.0      0.14        51       4      20 ..     732     748 ..     728     755 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0018
        MobB   3 givgksgsGKTtLleklipelkar 26 
                 +i+g sgsGKTtLl+ l + ++++
  CCE27155.1 103 AIIGGSGSGKTTLLNTLAERITSS 126
                 799*************99888776 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.14
        MobB   4 ivgksgsGKTtLlekli 20 
                 i g sgsGKT+Ll+ + 
  CCE27155.1 732 ILGPSGSGKTSLLNAMA 748
                 6799*********9875 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00087      0.31      17      37 ..     103     123 ..      96     127 .. 0.87
   2 ?    3.7   0.2       0.1        37      17      38 ..     731     752 ..     727     760 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00087
     Pox_A32  17 alvGgsGsGktvyLlsLlrtl 37 
                 a++GgsGsGkt+ L  L +++
  CCE27155.1 103 AIIGGSGSGKTTLLNTLAERI 123
                 89************9998776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.1
     Pox_A32  17 alvGgsGsGktvyLlsLlrtlv 38 
                 +++G sGsGkt  L ++  +l 
  CCE27155.1 731 VILGPSGSGKTSLLNAMALRLR 752
                 799********99988766654 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.047        17       3      35 ..     104     136 ..     102     245 .. 0.80
   2 ?    6.4   0.0     0.032        11       3      23 ..     732     752 ..     731     781 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.047
                 EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA   3 lyGppGtGKTllakavakelgvefleisgsell 35 
                 ++G  G GKT+l + +a+ + ++ l+ +g+  +
  CCE27155.1 104 IIGGSGSGKTTLLNTLAERITSSRLSQKGTVTF 136
                 68999*************987665555554444 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.032
                 EESSTTSSHHHHHHHHHHHHT CS
         AAA   3 lyGppGtGKTllakavakelg 23 
                 + Gp G GKT+l +a+a  l 
  CCE27155.1 732 ILGPSGSGKTSLLNAMALRLR 752
                 67*************997764 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.41   1.5e+02      50      70 ..     102     122 ..      89     133 .. 0.86
   2 ?    0.4   0.0       1.3   4.8e+02     103     148 ..     224     268 ..     215     281 .. 0.81
   3 ?    6.2   0.0     0.021       7.7      51      69 ..     731     749 ..     708     754 .. 0.85
   4 ?   -0.5   0.0       2.5   8.9e+02     100     150 ..     856     906 ..     848     919 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.41
   IstB_IS21  50 ivllGpsGvGKshlaialgve 70 
                  +++G+sG GK+ l  +l+ +
  CCE27155.1 102 TAIIGGSGSGKTTLLNTLAER 122
                 589**********99888865 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.3
   IstB_IS21 103 lkrllkvdllilDdlgllpldqaeaellfeviekryerrsiiitsn 148
                 ++ l+++++l lD+   + ld  +a +l + +++  ++  +iit+ 
  CCE27155.1 224 VQLLANPSVLFLDEPT-TGLDATSAFQLVRTLKSLAQKGRTIITTI 268
                 567788999***9975.689******************99999974 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.021
   IstB_IS21  51 vllGpsGvGKshlaialgv 69 
                 v+lGpsG GK+ l  a++ 
  CCE27155.1 731 VILGPSGSGKTSLLNAMAL 749
                 689**********999986 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 2.5
   IstB_IS21 100 aralkrllkvdllilDdlgllpldqaeaellfeviekry.errsiiitsnlp 150
                 +  ++ l+ +++l+lD+  +  ld   a+ ++ev+e    e r++i+t  + 
  CCE27155.1 856 SIGIQVLTDPRVLLLDEP-TSGLDAFTASSIMEVLEGLAnEGRTVILTIHQA 906
                 5567899999******96.578999999999999998651567777776655 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0018      0.64       3      49 ..     101     147 ..      99     181 .. 0.79
   2 ?    2.2   0.1      0.24        85       5      26 ..     731     754 ..     728     780 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0018
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlre 49 
                 v  + G++G+GKt +l++l+ +++++++ ++ ++    ++ v+ +r+
  CCE27155.1 101 VTAIIGGSGSGKTTLLNTLAERITSSRLSQKGTVTFNGRAGVHSIRH 147
                 56788******************666666665555555555666655 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.24
     DUF2075   5 lVtGvaGtGKtvvllnllael..e 26 
                 ++ G +G+GKt +l++++ +l  +
  CCE27155.1 731 VILGPSGSGKTSLLNAMALRLrgS 754
                 789**************9998543 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00032      0.11      31      74 ..     616     659 ..     595     665 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00032
     PDR_CDR  31 GddYlelsfgyssshlwrnfgiliaflifflalyllatelisae 74 
                 G dY+ +s+g+ ++ ++r ++il  ++++f+ l ++ + l++ e
  CCE27155.1 616 GGDYVMESLGFPKNWVTRPIVILASYVVLFISLSVVGLHLVKVE 659
                 889*********************************99999876 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1       0.1        36      16      42 ..      96     122 ..      87     134 .. 0.78
   2 ?    7.3   0.0     0.008       2.9       9      42 ..     713     750 ..     708     756 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.1
                 HHH-SEEEEE--TTSSTTHHHHHHHHH CS
        PhoH  16 lkkndivfaiGpaGtGKtylavalave 42 
                 lk  +++ +iG +G+GKt l  +la +
  CCE27155.1  96 LKPGTVTAIIGGSGSGKTTLLNTLAER 122
                 5666899***********997777755 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.008
                 HHHHHHHHH....H-SEEEEE--TTSSTTHHHHHHHHH CS
        PhoH   9 Qkeylealk....kndivfaiGpaGtGKtylavalave 42 
                 Qk++l+ l+    +  + +++Gp+G+GKt l  a+a++
  CCE27155.1 713 QKTILQPLTttfpAGVLNVILGPSGSGKTSLLNAMALR 750
                 66666666644434448899************999987 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.2    0.0036       1.3       2      30 ..     102     130 ..     101     155 .. 0.80
   2 ?    2.9   0.1      0.22        79       4      24 ..     732     752 ..     730     770 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0036
         PRK   2 IgvagsSGaGkttvarklekifgrekvka 30 
                  ++ g SG+Gktt+ ++l +++    +  
  CCE27155.1 102 TAIIGGSGSGKTTLLNTLAERITSSRLSQ 130
                 5899****************999777664 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.22
         PRK   4 vagsSGaGkttvarklekifg 24 
                 + g+SG+Gkt++ +++  +++
  CCE27155.1 732 ILGPSGSGKTSLLNAMALRLR 752
                 679********9988876655 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.3     0.019       6.9       8      38 ..     104     133 ..      99     144 .. 0.77
   2 ?    5.0   0.0      0.04        14       7      24 ..     731     748 ..     728     764 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.019
                 EE-STTSSHHHHHHHHHHSS---B---SS-E CS
       SRPRB   8 lvGlsdsGKTslftrLttdsvkktvtSqess 38 
                 ++G s sGKT+l++ L +  ++++  Sq+ +
  CCE27155.1 104 IIGGSGSGKTTLLNTLAER-ITSSRLSQKGT 133
                 89*************9864.55666666555 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.04
                 EEE-STTSSHHHHHHHHH CS
       SRPRB   7 llvGlsdsGKTslftrLt 24 
                 +++G+s sGKTsl++ + 
  CCE27155.1 731 VILGPSGSGKTSLLNAMA 748
                 699***********9875 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0031       1.1       9      32 ..     104     127 ..     100     173 .. 0.68
   2 ?    1.7   0.0      0.35   1.3e+02       8      25 ..     731     748 ..     727     761 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0031
                 EEEBTTSSCCCCCCTTSSSS---- CS
      Septin   9 vvGesglGkttlintlfetdliee 32 
                 ++G sg Gkttl+ntl e+   ++
  CCE27155.1 104 IIGGSGSGKTTLLNTLAERITSSR 127
                 789*************87655444 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.35
                 EEEEBTTSSCCCCCCTTS CS
      Septin   8 mvvGesglGkttlintlf 25 
                 ++ G sg Gkt+l+n++ 
  CCE27155.1 731 VILGPSGSGKTSLLNAMA 748
                 478************986 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0095       3.4      21      47 ..     104     134 ..      90     139 .. 0.76
   2 ?    2.6   0.0      0.19        69      18      40 ..     729     751 ..     716     756 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0095
  Zeta_toxin  21 lgGqpGAGKselaellkdele....rqgnvv 47 
                 + G++G+GK++l++ l+++++    +q++ v
  CCE27155.1 104 IIGGSGSGKTTLLNTLAERITssrlSQKGTV 134
                 55778************99975555555555 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.19
  Zeta_toxin  18 lillgGqpGAGKselaellkdel 40 
                 l ++ G +G+GK++l+++++ +l
  CCE27155.1 729 LNVILGPSGSGKTSLLNAMALRL 751
                 55677999*********998877 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0039       1.4       1      20 [.     105     124 ..     105     141 .. 0.87
   2 ?    2.0   0.1      0.71   2.5e+02       1      16 [.     733     748 ..     733     775 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0039
                 EE-TTSSHHHHHHHHHHHHT CS
      AAA_17   1 lGgPGsGKgtqceklvekyg 20 
                 +Gg GsGK+t++++l+e++ 
  CCE27155.1 105 IGGSGSGKTTLLNTLAERIT 124
                 69**************9875 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.71
                 EE-TTSSHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklv 16 
                 lG+ GsGK+ +++ ++
  CCE27155.1 733 LGPSGSGKTSLLNAMA 748
                 79*********99877 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0     0.003       1.1       6      47 ..      86     126 ..      82     269 .. 0.86
   2 ?   -0.1   0.0       1.2   4.3e+02      30      40 ..     737     747 ..     724     754 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.003
  KAP_NTPase   6 saladilseptlatpivvgLygkWGsGKssllnkledelkef 47 
                 ++l   +s  +l++++v ++ g  GsGK++lln l + + + 
  CCE27155.1  86 KNLLHSVS-ADLKPGTVTAIIGGSGSGKTTLLNTLAERITSS 126
                 56666666.5689**********************9998876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
  KAP_NTPase  30 GsGKssllnkl 40 
                 GsGK+slln +
  CCE27155.1 737 GSGKTSLLNAM 747
                 9*******975 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2     0.042        15       4      26 ..     101     123 ..      99     141 .. 0.79
   2 ?    3.0   0.0      0.26        95       5      25 ..     730     750 ..     727     787 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.042
      AAA_14   4 ilvitGaRrvGKTtllkqlikel 26 
                 + +i G   +GKTtll++l+++ 
  CCE27155.1 101 VTAIIGGSGSGKTTLLNTLAERI 123
                 67899999**********99654 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.26
      AAA_14   5 lvitGaRrvGKTtllkqlike 25 
                  vi G+  +GKT ll+ ++ +
  CCE27155.1 730 NVILGPSGSGKTSLLNAMALR 750
                 589************998755 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2      0.03        11       6      23 ..     104     121 ..     100     138 .. 0.82
   2 ?    3.1   0.0       0.2        71       6      21 ..     732     747 ..     729     753 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.03
   PduV-EutP   6 liGkvgsGKttLtqalkg 23 
                 +iG +gsGKttL ++l +
  CCE27155.1 104 IIGGSGSGKTTLLNTLAE 121
                 79**********999876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.2
   PduV-EutP   6 liGkvgsGKttLtqal 21 
                 ++G++gsGKt+L +a+
  CCE27155.1 732 ILGPSGSGKTSLLNAM 747
                 78**********9876 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1     0.018       6.5      15      44 ..      93     124 ..      77     137 .. 0.75
   2 ?    1.9   0.0      0.57     2e+02      22      43 ..     730     751 ..     700     759 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.018
                 HHCH..TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  15 akal..gdvilLeGdLGaGKTtlvrglakalg 44 
                  + l  g+v ++ G  G+GKTtl   la+ + 
  CCE27155.1  93 SADLkpGTVTAIIGGSGSGKTTLLNTLAERIT 124
                 333355788999***************99875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.57
                 EEEEESTTSSHHHHHHHHHHHT CS
        TsaE  22 ilLeGdLGaGKTtlvrglakal 43 
                  ++ G+ G+GKT l  ++a  l
  CCE27155.1 730 NVILGPSGSGKTSLLNAMALRL 751
                 5677999********9998665 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.8    0.0086       3.1       3      28 ..     101     126 ..      99     135 .. 0.86
   2 ?    3.2   0.1      0.17        60       5      26 ..     731     752 ..     728     760 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0086
                 EEEEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54   3 villvGlqGaGKTttlaKLaallkke 28 
                 v++++G  G+GKTt l  La++++++
  CCE27155.1 101 VTAIIGGSGSGKTTLLNTLAERITSS 126
                 7899****************998765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.17
                 EEEESTTSSHHHHHHHHHHHHH CS
       SRP54   5 llvGlqGaGKTttlaKLaallk 26 
                 +++G+ G+GKT+ l  +a +l+
  CCE27155.1 731 VILGPSGSGKTSLLNAMALRLR 752
                 689************9998876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2     0.053        19       2      21 ..     103     122 ..     102     137 .. 0.85
   2 ?    3.6   0.1      0.17        61       2      18 ..     731     747 ..     731     750 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.053
                 EEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlge 21 
                 a++G   sGK+++ln L ++
  CCE27155.1 103 AIIGGSGSGKTTLLNTLAER 122
                 789**************876 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.17
                 EEEEBTTTTHHHHHHHH CS
   Dynamin_N   2 avvGsqSsGKSSvlnaL 18 
                 +++G   sGK+S+lna+
  CCE27155.1 731 VILGPSGSGKTSLLNAM 747
                 578999*********97 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1      0.13        46       2      25 ..     103     126 ..     102     135 .. 0.85
   2 ?    5.2   0.1     0.044        16       4      23 ..     733     752 ..     731     765 .. 0.84
   3 ?   -2.3   0.0       8.7   3.1e+03      31      48 ..    1334    1351 ..    1325    1358 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.13
                     EEE-STTSSHHHHHHHHHHHHT-E CS
  Cytidylate_kin   2 aiDGPagsGKssvaralaeklglk 25 
                     ai G +gsGK ++  +lae++  +
      CCE27155.1 103 AIIGGSGSGKTTLLNTLAERITSS 126
                     78899**************98765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.044
                     E-STTSSHHHHHHHHHHHHT CS
  Cytidylate_kin   4 DGPagsGKssvaralaeklg 23 
                      GP+gsGK s+  a+a +l 
      CCE27155.1 733 LGPSGSGKTSLLNAMALRLR 752
                     5**************99885 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 8.7
                      HHHHHHHHHHHHTT--TT CS
  Cytidylate_kin   31 alYRalalaalrrkvdll 48  
                       +YRa+a+  lr+  + +
      CCE27155.1 1334 VVYRAMAWLLLRAVRARW 1351
                      58********99755554 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.8    0.0083         3      26      50 ..     102     129 ..     100     135 .. 0.84
   2 ?   -0.6   0.0       3.3   1.2e+03      28      42 ..     732     746 ..     730     752 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0083
       DUF87  26 lAilgsTGsGKSntvavLleelle...k 50 
                 +Ai+g +GsGK+++   L e++ +   +
  CCE27155.1 102 TAIIGGSGSGKTTLLNTLAERITSsrlS 129
                 59*******************9875543 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 3.3
       DUF87  28 ilgsTGsGKSntvav 42 
                 ilg +GsGK+ +   
  CCE27155.1 732 ILGPSGSGKTSLLNA 746
                 9*********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              50  [number of targets reported over threshold]
# CPU time: 1.00u 0.28s 00:00:01.28 Elapsed: 00:00:00.43
# Mc/sec: 9612.65
//
Query:       CCE27156.1  [L=412]
Description: uncharacterized protein CPUR_00628 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-16   59.8   0.0    5.8e-16   59.2   0.0    1.2  1  APH             Phosphotransferase enzyme family
     0.0025   17.5   0.0     0.0069   16.0   0.0    1.9  2  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   6.4e-20   5.8e-16       8     201 ..      67     295 ..      61     302 .. 0.73

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 6.4e-20
                 .SSCEEEEEEETT.--EEEEEE-TT...S-HHHHHHHHHHHHHHHHTT-.B--B-CTTB.S-EEETTEEEEEEE----EE-SS....HHHHHHHHHHHH CS
         APH   8 gasnrtylvttpa.gryvlrrnppa...raaeeirrevallrlLakagv.pvPevlagd.tddeeigllfalieyvpgrsllr....klsaaqlpelle 96 
                 g+ n + ++  ++   +++r+++      ++  + +e a +r ++k+   p+P+v++++   d+  g+++ l+ey++gr+l +    +  ++   +++ 
  CCE27156.1  67 GFNNLVLELAFSDnVYWIVRIPHNTltdGNKTAMLSEIATMRIIQKHTSvPIPQVFDFEtSVDQPFGYPYMLLEYLGGRTLPDilarAIPHQYHAKVAK 165
                 56666666666663368999988887778899999**********99889*********667888999***************7777555555555555 PP

                 HHHHHHC............................CHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC...HHHHHHHHHHHHH.HHH--SS CS
         APH  97 algefla............................alhqvdpaalpladflaqdlellrqlesatarllaselld...lleeleeqvlaal.aallpge 163
                 +l+ + a                            a h+     +++ + +  + +++rq e++     +++ +d     + l   vl+++ +++++  
  CCE27156.1 166 QLAKVFAelqnltfsrigrlwcgedaeqpveiigmAWHAS----SGPLGSSLEYFYDQRQSENREVVVAHPDHPDwctACWVLKLSVLQMIvEDRVR-- 258
                 5555555444455555555555555555555444444444....66666666778888888888777777777777775555555566655155555.. PP

                 S-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEEC CS
         APH 164 lptvllHgDlhpgNllvdpddgrvtGviDfedaglgpp 201
                 +p  l+H Dlh gN+l+d  +  +tG+iD+  a ++p 
  CCE27156.1 259 GPFPLCHLDLHYGNMLFD-KEYNLTGIIDWSSAQAAPL 295
                 9*****************.778889*****99998875 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   7.6e-07    0.0069     138     172 ..     253     288 ..     159     295 .. 0.88
   2 ?   -3.0   0.0       0.5   4.5e+03      31      64 ..     372     404 ..     368     405 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.6e-07
                     H.HCHGG-EEEE-S--SGGGEEE.-CTTEEEE--GT CS
  Choline_kinase 138 l.eelespvvfcHnDlqegNillnkeekklvlIDFE 172
                     + ++ + p  +cH Dl +gN+l++ke +   +ID+ 
      CCE27156.1 253 VeDRVRGPFPLCHLDLHYGNMLFDKEYNLTGIIDWS 288
                     44466677889************99999999***95 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.5
                     HHTTSSS-EEEEETTEEEEE--TCEE--TTGGGC CS
  Choline_kinase  31 serglgpklygifenGrieefiesrtlstedlre 64 
                     +++  +pk  ++f++  + + + ++t++ e+lre
      CCE27156.1 372 HQYMASPKS-ALFDGKIMAKLMYGKTITWEQLRE 404
                     555555554.568888888999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3134.15
//
Query:       CCE27157.1  [L=633]
Description: related to sorbitol transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-90  302.5  22.6    6.4e-90  302.2  22.6    1.1  1  Sugar_tr  Sugar (and other) transporter
    2.4e-16   59.6  40.8    1.1e-10   41.0  13.4    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.2  22.6   7.1e-94   6.4e-90       3     452 .]     118     574 ..     116     574 .. 0.90

  Alignments for each domain:
  == domain 1  score: 302.2 bits;  conditional E-value: 7.1e-94
                 HHHHHHHHHHHHH.HHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHH.HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   3 lvaalggllfgYd.tgvigafltllkfaknfglsksksskeessvlsglivsiflvGa.iiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 ++ ++g  ++g+d tg  ga + +++    +g   s++ ++   + +gli +  ++G+ +iG+ ++ +l ++fGR+ ++ ++a +++   + +a+++  
  CCE27157.1 118 FTCSIGAAVQGWDqTGSNGANIFFPA---YYGIGGSSTHDK---IIVGLINAGPYIGSaLIGCWLSDPLNNYFGRRGTIFFSAHFCIWPVIGSALCH-- 208
                 56678889999984455555555555...555555554333...566666666666652467777777889**************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                  ++e+ +++R+l+Gig+G+   +vP+y++E+Ap+++Rgalv+ +q++++fGi++++ ++l++ k  +   wr++lg  ++pa+ l+ l++++PESPr++
  CCE27157.1 209 -TWEQQLACRILMGIGMGAKASTVPIYAAENAPASIRGALVMSWQMWTAFGIMLGTAINLAVFKLAGPLNWRLMLGAPFIPAVPLVCLIYLCPESPRWY 306
                 .9************************************************************555555******************************* PP

                 HHTT-HHHHHHHHHHHHHC...HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH......HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH.. CS
    Sugar_tr 199 vekgkeeeakevlaklrge...edadrelaeekdsleaeqeeekaswkellsskt...vrqrlligvvlqifqqltGinaimyysptifenlglsks.. 289
                 ++kg+++ea ++l  lr +   + +d +    + ++e++   ++++++++ + +t   +r++ l ++ ++i+qq++Gin+i +ys+tife++  +++  
  CCE27157.1 307 MKKGRYQEAWKSLIILRRDpiqAARDLYYISAQLEIEQALIGRTNYVSRFTQLFTiprIRRANLAAFTVMIAQQMCGINIIAFYSTTIFEQAFKQDPnk 405
                 **************988876555556666666666666655569999999999999999*********************************99999** PP

                 ....HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS.....CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTT CS
    Sugar_tr 290 ....llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks..kaasivaivfialfialfalgwgpvpwvlvsElfpqs 382
                     +++++++g vn+++ f a+f++d fGRR lll+ +  m+  ++  g ++l+  ++s  +a ++++  f++lf a++++g gpvp+ +++E++p+s
  CCE27157.1 406 qfkaMIGSFGFGLVNWLFAFPAFFTIDSFGRRSLLLFTFPQMFWTLLAAGLCTLIDDEGSmaDARTGLVCLFVFLFGAFYSPGEGPVPFTYSAEVYPLS 504
                 *************************************************9777777777799999********************************** PP

                 THHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 383 vRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                  R +++ +ava+  ++  + +++fp+++e++   + f ++ag++v++++++ff vpet  rtlee++++f
  CCE27157.1 505 HRETGMGFAVATCLFWAAVLGITFPFLLERLDTIGAFSLYAGFNVIAFVMIFFWVPETMKRTLEELDWVF 574
                 ********************************************************************98 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0  13.4   1.2e-14   1.1e-10      12     239 ..     137     400 ..     113     412 .. 0.78
   2 !   25.2  22.3   7.7e-10   6.9e-06      15     180 ..     391     565 ..     370     600 .. 0.72

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1.2e-14
       MFS_1  12 rsilgpalplalaedlgispseigllltlyalgaavaslpl.GrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgagalfpagaa 108
                 ++i++pa+   ++ + + ++  +gl+ ++ ++g+a+    l  +l + fGrr ++++++ + +   ++++ +++++   l++r+l+G+g+ga ++++ +
  CCE27157.1 137 ANIFFPAYY-GIGGSSTHDKIIVGLINAGPYIGSALIGCWLsDPLNNYFGRRGTIFFSAHFCIWP-VIGSaLCHTWEQQLACRILMGIGMGAKASTVPI 233
                 233444444.455554445555777777766666555555546667799*****99999988888.66664557766********************** PP

       MFS_1 109 liadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkeee................ 188
                 ++a+ +p + rg  +  +++ +++G++lg ++  ++  ++g   Wr++  +  i ++ + v+  l +++++++r+  ++ +                  
  CCE27157.1 234 YAAENAPASIRGALVMSWQMWTAFGIMLGTAINLAVFKLAGplnWRLMLGAPFIPAVPL-VC--LIYLCPESPRWYMKKGRYQeawksliilrrdpiqa 329
                 *************************************9999999**9999999999997.55..99999999999998888878899999999999999 PP

       MFS_1 189 ...............kgtgpaplvpawkallkdpvlw.....illialllfffgfsglltllplylqevlg 239
                                +  g+++ v+ +++l++ p +      ++ ++++  ++g++++ +++++++ + ++
  CCE27157.1 330 ardlyyisaqleieqALIGRTNYVSRFTQLFTIPRIRranlaAFTVMIAQQMCGINIIAFYSTTIFEQAFK 400
                 99999999888888766666666668999999998843333456666666688888899999997777765 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 7.7e-10
       MFS_1  15 lgpalplalaedlgispseigllltl.yalgaavaslplGrlsdrfGrrrvlllg...lllfalg.lllllf....a...sslwlllvlrvlqGlga.g 100
                  ++++ +a ++d   ++++  ++ ++ ++l+ +++++p+ + +d fGrr++ll++   +++++l+ +l+ l+    +   +   l++++ +l G+++  
  CCE27157.1 391 STTIFEQAFKQD--PNKQFKAMIGSFgFGLVNWLFAFPAFFTIDSFGRRSLLLFTfpqMFWTLLAaGLCTLIddegSmadARTGLVCLFVFLFGAFYsP 487
                 222222244444..667777777777799*********************88888333455555533444435444155666669************78 PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperk 180
                 +  p+  ++ a+++p ++r  ++g++ a+  + a++  +  ++l++ l   ++f + a++ ++afv+  ++++++++ ++
  CCE27157.1 488 GEGPVPFTYSAEVYPLSHRETGMGFAVATCLFWAAVLGITFPFLLERLDTIGAFSLYAGFNVIAFVM--IFFWVPETMKR 565
                 89***********************9997777776666888***********************999..55555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.37
# Mc/sec: 5061.57
//
Query:       CCE27158.1  [L=99]
Description: uncharacterized protein CPUR_00630 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 749.28
//
Query:       CCE27159.1  [L=250]
Description: uncharacterized protein CPUR_00631 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2020.32
//
Query:       CCE27160.1  [L=181]
Description: uncharacterized protein CPUR_00632 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.077   12.9   0.2      0.077   12.9   0.2    2.1  2  SPDY      Domain of unknown function (DUF317)


Domain annotation for each model (and alignments):
>> SPDY  Domain of unknown function (DUF317)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.3      0.06   1.1e+03      13      37 ..      32      57 ..      19      59 .. 0.54
   2 ?   12.9   0.2   4.3e-06     0.077       3      44 ..     118     170 ..     118     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.06
        SPDY 13 pededaepaaWtiearp...aadgpaWh 37
                 ++++  + aW i +++    +d+p+W+
  CCE27160.1 32 DYADST-HWAWII-VGTfldHDDRPLWS 57
                333321.334444.44447778888886 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.3e-06
        SPDY   3 PDglarlelrpededae............paaWtiearpaadgpaWhatFtaat 44 
                 PDg   + + p+++ +e            p++W + a+    + +W+a+F+++t
  CCE27160.1 118 PDGYYSASYPPSSSNFEpfypnvasyfqpPETWDLVAHG-PIPGHWQARFDPHT 170
                 77777777778888777888888888888*********9.9999*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1352.10
//
Query:       CCE27161.1  [L=490]
Description: uncharacterized protein CPUR_00633 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-26   91.6   9.5    7.9e-12   45.6   0.3    2.6  3  Ank_2      Ankyrin repeats (3 copies)
      2e-14   53.8   6.4    4.2e-06   27.2   0.4    4.2  4  Ank_4      Ankyrin repeats (many copies)
    2.4e-14   53.2   6.2    1.1e-07   31.9   0.2    3.6  3  Ank_5      Ankyrin repeats (many copies)
    1.2e-12   46.8   2.0     0.0042   17.5   0.1    4.5  4  Ank_3      Ankyrin repeat
    6.2e-11   42.2  10.4     0.0014   19.0   0.3    4.1  4  Ank        Ankyrin repeat
      2e-10   40.3   0.0      7e-10   38.6   0.0    2.0  2  zf-C2H2_3  zinc-finger of acetyl-transferase ESCO
  ------ inclusion threshold ------
       0.04   13.4   0.0      0.066   12.7   0.0    1.2  1  APCDDC     Adenomatosis polyposis coli down-regulated 1


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   1.0     2e-12   5.2e-09      21      76 ..     286     353 ..     264     361 .. 0.75
   2 !   45.6   0.3   3.1e-15   7.9e-12       1      74 [.     299     385 ..     299     394 .. 0.86
   3 !   29.7   0.1   2.8e-10   7.2e-07       2      74 ..     369     457 ..     368     466 .. 0.73

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2e-12
       Ank_2  21 dpn...k.ngktaLhyAakngnleivklLle..h......adndgrtpLhyAarsghleivklLlekg 76 
                 +p+   +   ++ Lh+Aa+ g+++i++ Ll+  h      ++++ +t+L++Aa  gh+e+v lL+e++
  CCE27161.1 286 NPDaslSgLSNSNLHLAASLGHKDICESLLKagHedpcpaLNENHQTALMLAAGAGHSEVVHLLCEHD 353
                 3333242555788*****************9553788888889999*******99**********873 PP

  == domain 2  score: 45.6 bits;  conditional E-value: 3.1e-15
       Ank_2   1 LhlAakngnlelvklLl.eg.adpn...k.ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLle 74 
                 LhlAa+ g+ ++++ Ll +g  dp    + n++taL++Aa +g+ e+v lL+eh        d+ gr + + A+  gh  ++++Ll 
  CCE27161.1 299 LHLAASLGHKDICESLLkAGhEDPCpalNeNHQTALMLAAGAGHSEVVHLLCEHdrscilrRDRRGRDAVMEASMGGHDTALQILLT 385
                 8*******99*******955355545443699*********************999999766699*********99**999999994 PP

  == domain 3  score: 29.7 bits;  conditional E-value: 2.8e-10
       Ank_2   2 hlAakngnlelvklLl...eg..adpn....k..ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLl.e 74 
                 + A++ g++ ++++Ll    g     +       +g+taLh+A +ngnl  +++Ll++   +d     ++tpL y+a  + + ++k L+ e
  CCE27161.1 369 MEASMGGHDTALQILLtyvPGgpR--DavhrAdlEGNTALHFASSNGNLLGLRTLLAAgadVDcrnIWNWTPLAYSATVQAEVCLKGLVaE 457
                 7899999999*****998644341..233341589************66558****9775633433559****999988888888888833 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.4   1.6e-09   4.2e-06       4      54 ..     298     349 ..     296     350 .. 0.93
   2 !   10.0   0.0   0.00042       1.1      12      54 ..     341     383 ..     340     384 .. 0.88
   3 !   13.2   0.1   4.1e-05       0.1      30      47 ..     397     414 ..     392     415 .. 0.87
   4 !   22.3   0.5   5.5e-08   0.00014       2      42 ..     403     442 ..     402     444 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.6e-09
       Ank_4   4 aLhyaaisgrlelvrlLlekgad..inaqdnrsGetalhiAakrgnveilklL 54 
                  Lh aa+ g+ +++++Ll  g +  + a  n++++tal  Aa  g+ e+++lL
  CCE27161.1 298 NLHLAASLGHKDICESLLKAGHEdpCPAL-NENHQTALMLAAGAGHSEVVHLL 349
                 59*****************9988888887.********************998 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00042
       Ank_4  12 grlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklL 54 
                 g+ e+v+lL e+ +  i ++ +r+G+ a+  A ++g+  +l+ L
  CCE27161.1 341 GHSEVVHLLCEHdRSCILRR-DRRGRDAVMEASMGGHDTALQIL 383
                 899*********8899****.***************96666655 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 4.1e-05
       Ank_4  30 qdnrsGetalhiAakrgn 47 
                 +++ +G+talh+A ++gn
  CCE27161.1 397 RADLEGNTALHFASSNGN 414
                 4699*************9 PP

  == domain 4  score: 22.3 bits;  conditional E-value: 5.5e-08
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiA 42 
                 +taLh a + g+l  +r Ll+ gad++++ n+  +t+l + 
  CCE27161.1 403 NTALHFASSNGNLLGLRTLLAAGADVDCR-NIWNWTPLAYS 442
                 89***************************.*******9665 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.012        32      20      39 ..     299     319 ..     290     323 .. 0.82
   2 !   19.7   0.3   3.1e-07    0.0008       1      47 [.     314     361 ..     314     370 .. 0.88
   3 !   31.9   0.2   4.5e-11   1.1e-07       9      55 ..     395     441 ..     389     442 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.012
       Ank_5  20 LhvAakygaadvvrlLl.arg 39 
                 Lh+Aa+ g+ d+++ Ll a +
  CCE27161.1 299 LHLAASLGHKDICESLLkAGH 319
                 9****************6555 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 3.1e-07
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltds 47 
                 Ll++g    + +l+++ +t+L++Aa +g+++vv lL+++  ++ l+ +
  CCE27161.1 314 LLKAGhEDPCPALNENHQTALMLAAGAGHSEVVHLLCEHDRSCILRRD 361
                 677776677889999999********************9999988876 PP

  == domain 3  score: 31.9 bits;  conditional E-value: 4.5e-11
       Ank_5   9 vnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55 
                 v r d +gnt+Lh+A+++g++  +r Lla gad ++++ +++t+l +
  CCE27161.1 395 VHRADLEGNTALHFASSNGNLLGLRTLLAAGADVDCRNIWNWTPLAY 441
                 67889***************************************966 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1   0.00061       1.6       6      28 ..     299     321 ..     296     323 .. 0.88
   2 !   15.5   0.1   7.2e-06     0.018       1      24 [.     329     352 ..     329     355 .. 0.91
   3 ?   -0.7   0.0       1.3   3.4e+03       2      23 ..     364     385 ..     363     391 .. 0.83
   4 !   17.5   0.1   1.6e-06    0.0042       1      31 []     401     430 ..     401     430 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00061
       Ank_3   6 LhlAarsgnleivkfLlenkgad 28 
                 LhlAa+ g+ +i++ Ll+  + d
  CCE27161.1 299 LHLAASLGHKDICESLLKAGHED 321
                 9****************966655 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 7.2e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlen 24 
                 n +t+L+lAa +g+ e+v++L+e+
  CCE27161.1 329 NHQTALMLAAGAGHSEVVHLLCEH 352
                 579*******************95 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.3
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 G+ + ++A + g+ + ++ Ll 
  CCE27161.1 364 GRDAVMEASMGGHDTALQILLT 385
                 67788999999**999999986 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 1.6e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvna 31 
                 +G+t+Lh+A ++gnl  ++ Ll   gadv++
  CCE27161.1 401 EGNTALHFASSNGNLLGLRTLLA-AGADVDC 430
                 69*************99******.9***985 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.3   7.3e-05      0.19       6      24 ..     299     318 ..     296     327 .. 0.83
   2 !   15.7   0.1   6.1e-06     0.016       3      31 ..     331     361 ..     329     362 .. 0.82
   3 !   19.0   0.3   5.4e-07    0.0014       2      31 ..     402     432 ..     401     433 .. 0.90
   4 ?   -3.6   0.0         7   1.8e+04       3      10 ..     436     443 ..     436     450 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.3e-05
                 HHHHHHHTTHHHHHHHH.TT CS
         Ank   6 LHlAatngkkriiklLL.hG 24 
                 LHlAa+ g+k+i++ LL  G
  CCE27161.1 299 LHLAASLGHKDICESLLkAG 318
                 9***************9656 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 6.1e-06
                 BBHHHHHHHHTTHHHHHHHH.T.TTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.h.GAnlnald 31 
                  T+L+lAa  g+ ++++lL  h ++++  +d
  CCE27161.1 331 QTALMLAAGAGHSEVVHLLCeHdRSCILRRD 361
                 7*******99*******99897467776555 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 5.4e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 GnT+LH A++ng++  ++ LL  GA+++ ++
  CCE27161.1 402 GNTALHFASSNGNLLGLRTLLaAGADVDCRN 432
                 9***********9888888**88****9987 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 7
                 BBHHHHHH CS
         Ank   3 nTPLHlAa 10 
                 +TPL + a
  CCE27161.1 436 WTPLAYSA 443
                 69998866 PP

>> zf-C2H2_3  zinc-finger of acetyl-transferase ESCO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   2.7e-13     7e-10       1      39 [.     209     246 ..     209     247 .. 0.91
   2 ?   -2.6   0.0       2.1   5.3e+03      21      30 ..     384     393 ..     384     395 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 2.7e-13
   zf-C2H2_3   1 QlvLdl.gqksfgasqCkeCgMvYnpgspeDeklHkkfHa 39 
                 Q++L++ +q  f +  Ck+C+Mv+np  p+D+k H+k H+
  CCE27161.1 209 QTTLNIsSQAAFAE--CKVCDMVWNPLYPDDVKYHDKRHR 246
                 9*****77777777..***********************8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.1
   zf-C2H2_3  21 MvYnpgspeD 30 
                 ++Y+pg p D
  CCE27161.1 384 LTYVPGGPRD 393
                 69****9999 PP

>> APCDDC  Adenomatosis polyposis coli down-regulated 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.6e-05     0.066     177     224 ..     182     230 ..     171     233 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.6e-05
      APCDDC 177 eklveeLfLgdihtdksqrlsyrptsyQsplqsaknt.ahdCpiCslia 224
                 ++++e Lf  d h+  s+ l+ rp + Q++l+   ++   +C++C ++ 
  CCE27161.1 182 HTTREGLFYKDRHKLRSRSLKRRPMAVQTTLNISSQAaFAECKVCDMVW 230
                 344555*************************977665379******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3670.27
//
Query:       CCE27162.1  [L=270]
Description: uncharacterized protein CPUR_00634 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-45  152.5   0.0    9.4e-45  152.1   0.0    1.2  1  Vma12     Endoplasmic reticulum-based factor for assembly of 
  ------ inclusion threshold ------
      0.028   13.0   0.0      0.037   12.6   0.0    1.1  1  FUSC      Fusaric acid resistance protein family
        3.6    7.8   6.9       0.44   10.8   0.3    2.4  2  PBP_N     Penicillin-binding protein N-terminus


Domain annotation for each model (and alignments):
>> Vma12  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1   0.0   1.6e-48   9.4e-45       1     138 [.      69     215 ..      69     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 152.1 bits;  conditional E-value: 1.6e-48
       Vma12   1 sLlrgskvyvpppppkpepspEykallarLraeqeereYkrlinsvdpsqksgktds.pss.............sd...deltaqelkevnrqlilvlN 82 
                 +Llrgs+vy pppppkpeps+Eykal+arLr+e+ +r+Y+r++n+  p + ++++d  p+s             +d   d++t   l++v+rq++l++N
  CCE27162.1  69 QLLRGSQVYSPPPPPKPEPSDEYKALMARLRREEAQRAYDRMVNP--PPKVETFHDRfPTSaqafsqvnrpmhaADlgdDDVT---LQDVHRQVMLIIN 162
                 69*******************************************..446666777764446789999888877225669999...************* PP

       Vma12  83 iliSvvavffavwialrsartpslpvrvllslvvallVgvAEvvvyakylrkveea 138
                 +++S+++v+ ++w+ +r++   s+p+r+ll+++++++V++AEv+vy++y++++e+ 
  CCE27162.1 163 FMVSILGVAGTLWVTSRWW---SVPARILLTMGGSIVVAIAEVAVYSGYMWRMEQG 215
                 *******************...*******************************985 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.1e-06     0.037     241     379 ..      53     190 ..      47     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.1e-06
        FUSC 241 llarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale.adadtaalllarlaellaelaqllaslraleaaiaaarra 334
                 l++ l++ ++++ p+l++ll+  +           + ++ ++ +al+arlr+ +++++ ++       ++++ +++   aq+  +++++ +a+    + 
  CCE27162.1  53 LWKSLNDDHQTR-PSLEQLLRGSQVYspppP---PKPEPSDEYKALMARLRREEAQRAyDRMVNPPPKVETFHDRFPTSAQAFSQVNRPMHAADLGDDD 147
                 555666655544.668888888888775441...35678889999999998888888876777777778888888888888888888888887777888 PP

        FUSC 335 erlarhrdhlaallnglraalaillaglfWiatgWpsGatavlla 379
                  +l++ +  ++ ++n++ + l   +ag +W+++ W s +  +ll+
  CCE27162.1 148 VTLQDVHRQVMLIINFMVSIL--GVAGTLWVTSRWWSVPARILLT 190
                 9999************97765..689*********9888777665 PP

>> PBP_N  Penicillin-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   7.3e-05      0.44      47      74 ..      72      99 ..      37     111 .. 0.73
   2 ?   -0.3   1.0       0.2   1.2e+03      86     108 ..     188     210 ..     175     229 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.3e-05
       PBP_N 47 lssdaatpepprepepeepfradlkhaa 74
                  s++ +p+pp++pep + ++a +   +
  CCE27162.1 72 RGSQVYSPPPPPKPEPSDEYKALMARLR 99
                4678899***********9998654443 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.2
       PBP_N  86 wgtllvvvllavlsvasgaayvw 108
                   t+  ++++a++ va  ++y+w
  CCE27162.1 188 LLTMGGSIVVAIAEVAVYSGYMW 210
                 55666778999999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2084.63
//
Query:       CCE27163.1  [L=451]
Description: probable prenyl transferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-74  250.0   0.0      3e-74  249.3   0.0    1.3  1  polyprenyl_synt  Polyprenyl synthetase
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.021   14.4   0.0    1.3  1  HEPPP_synt_1     Heptaprenyl diphosphate synthase (HEPPP synt


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.3   0.0   3.3e-78     3e-74       3     255 ..     105     402 ..     103     403 .. 0.92

  Alignments for each domain:
  == domain 1  score: 249.3 bits;  conditional E-value: 3.3e-78
                      HHHHHHHHHHHSSS--HHHHHHHHHHHHHS.CG.....H..........................................HHHHHHHHHHHHH CS
  polyprenyl_synt   3 lleealeylveagGKrlRpllvllaaealk.ee.....e..........................................eelekaavlawiv 48 
                       l++a++y+++a+GK++Rpl+vll+++a++  +     e                                          + l ++++la+i+
       CCE27163.1 105 SLDRAAKYYTQAEGKHVRPLIVLLMSRATHlCPknprpEpiqgaraidssisppeiladvnpsatplstlstepeptdgplDILPSQRRLAEIT 198
                      6899**************************844445551556666777778888888899999999999999999*****9999********** PP

                      HHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHH....HHTTTTTCCC. CS
  polyprenyl_synt  49 ellhaasLvhDDimDdsetRRGqpcahrlvGnklAindgdfllarafellaklfekslellelfsevllqtveGqlldl....eeekdddlskf 138
                      el+h+asL+hDD++D+s  RRG p+a+ ++Gnk+A+++gdfll+ra+  la+l  +++e++el+++v++++veG++++l    ++e+++++s++
       CCE27163.1 199 ELIHTASLLHDDVIDHSVSRRGSPSANLEFGNKMAVLAGDFLLGRASVALARL--RHVEVVELVATVIANLVEGEFMQLknteRDERRPQYSEK 290
                      *****************************************************..99**********************554434457888899 PP

                      SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHH CS
  polyprenyl_synt 139 sleeyleivkyKTaylfalpvalaallagasdeelealkdiglelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqr 232
                       l+ yl++++ KTa+l+a ++++ a+l++a+ ++++a++++g++lGlaFQ++DD+lD++ + ++lgKpag+D++ g +t+p+l+a++ ++pe  
       CCE27163.1 291 ILTYYLQKTYLKTASLIAKSCRATAILGNADATTVDAAYSYGRNLGLAFQLVDDMLDYTRSGKDLGKPAGADLELGLATAPLLFAWK-QNPE-- 381
                      9999**************************9999*****************************************************.7777.. PP

                      HHHHHHTTSSHHHHHHHHHHHHH CS
  polyprenyl_synt 233 kvlkeilgkkaekeedvkealel 255
                        l +++g+k+eke+dv++a +l
       CCE27163.1 382 --LGALVGRKFEKEGDVDKARQL 402
                      ..***************999776 PP

>> HEPPP_synt_1  Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.4e-06     0.021      42     112 ..     198     273 ..     188     300 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.4e-06
  HEPPP_synt_1  42 amlvqiAldtHdkvsek.keeeeeekkn....rqLtVLAGdyYSglYYklLaevkdielirllaeaikeinehkik 112
                   + l+++A   Hd v ++  +++ + + n     ++ VLAGd+  g    +La+++++e ++l a+ i +  e   +
    CCE27163.1 198 TELIHTASLLHDDVIDHsVSRRGSPSANlefgNKMAVLAGDFLLGRASVALARLRHVEVVELVATVIANLVEGEFM 273
                   6799999999*9999985555555554422336799******************************9998886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3672.52
//
Query:       CCE27164.1  [L=780]
Description: related to allantoinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-27   96.9   0.0    2.5e-27   96.1   0.0    1.3  1  Amidohydro_1  Amidohydrolase family
    2.4e-13   50.4   0.2    1.7e-07   31.1   0.0    2.2  2  Amidohydro_3  Amidohydrolase family
  ------ inclusion threshold ------
        0.2   12.2   0.0         52    4.5   0.0    4.0  4  LRR_4         Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.0   4.1e-31   2.5e-27       2     319 ..      77     452 ..      76     475 .. 0.76

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 4.1e-31
                   EEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH...HHHHHHH...HHHT.SSSEEEEEEESSEGGSGCC CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst...giealle...aaee.lplglrilggkvsldrgsa 91 
                   +lPGl+DaHvHl+             +p++t +e++ +g+++a ++G+ttv dm+ ++ +    + al+e   a++  ++++++++gg v++  g++
    CCE27164.1  77 LLPGLVDAHVHLN-------------EPGRTPWEGFWTGTRAAASGGVTTVVDMPLNALPpttTVGALREkltACKGqCWVDVGFYGG-VVP--GNE 157
                   89**********8.............********************************99**9555555544477778********99.555..444 PP

                   CSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE.....TSSCHHHHHHHHHHTTTEEEETTTTSTCC.. CS
  Amidohydro_1  92 etskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHa.....letkgevedaeaafgetiehgthlevaes.. 181
                      + ++e+ ++g+   + +  d++v+      e pa++++ ++ a+k+ k+  + +++Ha     ++++ ++++ e+  ++    +t++ +++s  
    CCE27164.1 158 GELLGLIEAGVRGF---KGFLIDSGVD------EFPAITPDDMALAMKALKDSSTTLMFHAemepcAGNTPIQAADERNSPSPNDVTTYQTFLDSrp 245
                   55666666666666...4444455555......88**************************966665555555555555555666677777777799 PP

                   ...................HHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEE.........HHHHHHHH..............SEHHHHHHHHHH CS
  Amidohydro_1 182 ...................lglldeiklilahgvhltpteaellkerlkeagva.........hcpfsnsi..............lrsgrealrkal 236
                                        +l +++l +a++++l         ++++  g++         +  ++++i               + +r al++ l
    CCE27164.1 246 ptlettaveailsasplapSLHLHIVHLSAAQCIPLL--------RNARAQGINitaetcfhyLGLSAEEIpngdtrhkccppirNAHNRHALWEEL 334
                   9988777776666555555444444455555555555........4444455555566667775555555555555555555555999999999999 PP

                   HH..TSCEEEEEECT............................TSSCCGGHHHH.........HHHHHHHHHHCCTT.TTHCHCHHHHHHHHHTHHH CS
  Amidohydro_1 237 de..GvkvglgtDga............................asgnslnllee.........lrlalklqrgllye.deegglslkealrmaTing 293
                    +  + + ++++D+                             ++g+ ++ + +         +     ++ + + + + +g ls+ +++r++++ +
    CCE27164.1 335 AApdSCIRSVVSDHSpctpdlkllpkglccspgpdatkpdatkQAGDFMSAWGGissvglglsI-----IHTAANERsETDGSLSITDIVRLCCQAP 426
                   987566699999*8899**************************999999999999998633322.....555566668899**************** PP

                   HHHTT-TTTSSSS-TTSB--EEEECC CS
  Amidohydro_1 294 AkalglddkvGsievGkdADlvvvdl 319
                   A+++gl++++G++evG dAD+ v+d 
    CCE27164.1 427 AEQVGLSHRKGALEVGLDADICVFDD 452
                   ************************75 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   4.7e-07    0.0028       3      50 ..      70     117 ..      69     131 .. 0.83
   2 !   31.1   0.0   2.9e-11   1.7e-07     400     447 ..     405     452 ..     392     465 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.7e-07
  Amidohydro_3   3 iDakGrlvlPGFvDsHtHlaggg.vnlrllrlpdarvtslegvltavrd 50 
                   iD + rl+lPG+vD+H Hl + g   + +++ +  r+ ++ gv+t+v+ 
    CCE27164.1  70 IDVSPRLLLPGLVDAHVHLNEPGrTPWEGFWTGT-RAAASGGVTTVVDM 117
                   677779*****************77779999999.99999999999875 PP

  == domain 2  score: 31.1 bits;  conditional E-value: 2.9e-11
  Amidohydro_3 400 evlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvlda 447
                   e+   d  ls++++++l+ + pA+++gl++rkG LevG dAD++v+d+
    CCE27164.1 405 ERSETDGSLSITDIVRLCCQAPAEQVGLSHRKGALEVGLDADICVFDD 452
                   56778999**************************************95 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.4   2.4e+03      22      30 ..     487     495 ..     478     508 .. 0.83
   2 ?    0.4   0.0      0.16   9.7e+02      21      32 ..     544     555 ..     535     560 .. 0.74
   3 ?   -0.3   0.0      0.27   1.6e+03      13      37 ..     663     687 ..     659     691 .. 0.84
   4 ?    4.5   0.0    0.0086        52      18      32 ..     700     713 ..     696     724 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.4
                 -TT--EEE- CS
       LRR_4  22 lpnLkeLdL 30 
                 +p+L++L++
  CCE27164.1 487 FPKLEQLWI 495
                 99*****98 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.16
                 H-TT--EEE-.- CS
       LRR_4  21 klpnLkeLdLsg 32 
                 +l++L++++L +
  CCE27164.1 544 GLKSLQYISLES 555
                 59*******943 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.27
                 --E-S-HHH-TT--EEE-.-S---- CS
       LRR_4  13 ltdiplleklpnLkeLdLsgNnlit 37 
                 l+  +++++ p+ ++L + ++n+++
  CCE27164.1 663 LKGYEWFRGTPSIHTLGCYDFNFLS 687
                 677789999*********8888886 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.0086
                 -HHH-TT--EEE-.- CS
       LRR_4  18 lleklpnLkeLdLsg 32 
                 +l+++pnL++L++ g
  CCE27164.1 700 FLASFPNLRTLSI-G 713
                 5778********9.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5526.16
//
Query:       CCE27165.1  [L=593]
Description: uncharacterized protein CPUR_00637 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-21   74.9   1.0    1.1e-20   73.4   1.0    1.9  1  DnaJ        DnaJ domain
  ------ inclusion threshold ------
       0.06   13.8   0.4       0.11   13.0   0.4    1.3  1  DUF1878     Protein of unknown function (DUF1878)


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   1.0   1.3e-24   1.1e-20       1      63 []       7      72 ..       7      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 1.3e-24
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH....HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdp....eaeekFkeineAyevLsdpekRkqYD 63
                d+Y+iLgvskda+ +eI++a+rkl+lk+HPDk  +dp    +++ +F++++ Aye Lsd+++R++YD
  CCE27165.1  7 DPYKILGVSKDAQISEIRSAHRKLVLKCHPDKV-HDPsmkaQKQAEFQQVQSAYELLSDESERQKYD 72
                78*****************************98.33335467777*********************9 PP

>> DUF1878  Protein of unknown function (DUF1878)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   1.2e-05      0.11      38      83 ..      47      92 ..      43      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
                --HHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHS-TTS CS
     DUF1878 38 lskeeveeilklCekLseeleeqkaegfvlFdkllakFakkLhekL 83
                 +++e +++    e Ls+e e+qk +  v+ ++l  +F+ k+h ++
  CCE27165.1 47 QKQAEFQQVQSAYELLSDESERQKYDESVMLEELQRQFQAKVHVSV 92
                4678999999999***************************999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2526  (0.140889); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                       319  (0.0177924); expected 17.9 (0.001)
Passed Fwd filter:                       113  (0.00630264); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.02u 0.40s 00:00:02.42 Elapsed: 00:00:00.58
# Mc/sec: 3086.67
//
Query:       CCE27166.1  [L=304]
Description: uncharacterized protein CPUR_00638 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-14   53.4   0.2    1.1e-13   52.2   0.2    1.6  1  Metallophos    Calcineurin-like phosphoesterase
    1.6e-05   25.2   1.2    0.00082   19.6   1.2    2.4  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.2   1.2e-17   1.1e-13       2     203 ..      10     214 ..       9     215 .. 0.60

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1.2e-17
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS...HHHHHHHHHHHHHHHHTSEEEEEC-TTS.....CHHHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrg...dlekellellaalvkypipvylllGNHe.....gfeeellnkygylgif 91 
                  ri++i+D+H      +            + +k d++++aGDl++ g   +++k  +++l+      + +++++GNH+               ++ + f
   CCE27166.1  10 RIVCISDTH-----NCT----------VNLPKGDVLIHAGDLTNQGsasEISK-AIKWLEDADF--DAKIVIAGNHDitldqS------FYSQHGHVF 83 
                  566666666.....222..........233578*************5644444.4444455555..677********533330......222222222 PP

                  ....HHHHEHHHCEEETSEEEEEETTE...EEEEEEESE........CEEE..THHHHHHHHHHHSCHHHHCC......HHHHHHHHHHTTCSEEEEE CS
  Metallophos  92 ....sepwrsdaevfnnlplaslgsgs...lkvlllhGg........spel..lvsldklgslnleleapepg......dewlkdlekrekadwvivl 166
                      ++  + +   ++  p++ + +     +++l ++G         sp+        ++ +++   e+++p+        ++ d     +   +iv+
   CCE27166.1  84 hnqkPQSSEECLALVSSSPSITYLNHEsatIRLLSAKGPqtqftvfgSPYSprY--GRWAFNYD---ESTHPDdassplTTIWDD----VPSHADIVV 172
                  211122222223333333333333333667777777777444333333333221..22222222...222222344777888888....9999***** PP

                  ESSESS.....CSSSCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 167 gHsply.....rgsgylfgdealedllkkygvdlvisGHtHv 203
                  +H p+      +  + ++g eal++ l + +++l ++GH+H 
   CCE27166.1 173 THTPPRnhgdaTIEQRPKGCEALRRALWRVRPKLAVCGHIHD 214
                  ******999999999999999999999**************6 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   1.2   9.1e-08   0.00082       3     128 ..      11     213 ..      10     222 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 9.1e-08
  Metallophos_2   3 laiiSDlHsnldaleavlealkevgvdaiihaGDl.eeeepe....vleellela..pvlaVrGNnD............................. 62 
                    ++ iSD+H       ++   l +   d +ihaGDl ++++ +    ++++l++      +++ GN+D                             
     CCE27166.1  11 IVCISDTH-------NCTVNLPKG--DVLIHAGDLtNQGSASeiskAIKWLEDADfdAKIVIAGNHDitldqsfysqhghvfhnqkpqsseeclal 97 
                    77888998.......455555666..99*******8666665122355555555499999*******99988888877777777777776666666 PP

  Metallophos_2  63 .............................eevveedvlreaaelgtdl.....................peeaelel....agek....vlliHgd 100
                                                                   +                     p++a   l    +++     + ++H  
     CCE27166.1  98 vssspsitylnhesatirllsakgpqtqfT-----------------VfgspysprygrwafnydesthPDDASSPLttiwDDVPshadIVVTHTP 176
                    666666666555444444444444443330.................0333334444444443344433333333333334222233457777777 PP

  Metallophos_2 101 pl........gvkdalaellkeaeegsd.vvvcGHtH 128
                    p         + +++ ++l+++ + ++  ++vcGH+H
     CCE27166.1 177 PRnhgdatieQRPKGCEALRRALWRVRPkLAVCGHIH 213
                    6688888888666666666666666666688888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2357.77
//
Query:       CCE27167.1  [L=498]
Description: uncharacterized protein CPUR_00639 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        5.2    6.6   7.3       0.24   11.0   1.6    1.7  2  Paralemmin  Paralemmin


Domain annotation for each model (and alignments):
>> Paralemmin  Paralemmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.4      0.33   5.9e+03     196     196 ..     285     285 ..     250     312 .. 0.42
   2 ?   11.0   1.6   1.3e-05      0.24     272     315 .]     457     498 .]     421     498 .] 0.57

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.33
  Paralemmin 196 g 196
                 +
  CCE27167.1 285 D 285
                 1 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 1.3e-05
  Paralemmin 272 pPngsaaeppaspeeneageeeaaseeqdldtkkkkrCkCCsvm 315
                  P++s ++p+  + + +a++ ++a+e ++ +++ k+ C CC++m
  CCE27167.1 457 SPKTSFQPPA-PSTTPQADDVAPAAE-AEPKVETKHGCGCCTIM 498
                 4455555554.333334344445444.44477889********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 4119.87
//
Query:       CCE27168.1  [L=452]
Description: related to phosphatidylserine decarboxylase 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-58  195.2   0.0    6.7e-58  194.6   0.0    1.3  1  PSDC             Phophatidylserine decarboxylase
    1.8e-33  115.8   0.0    2.7e-33  115.2   0.0    1.2  1  PS_Dcarbxylase   Phosphatidylserine decarboxylase
  ------ inclusion threshold ------
       0.21   11.4   0.0         30    4.6   0.0    2.3  2  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> PSDC  Phophatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.6   0.0   1.1e-61   6.7e-58       2     140 .]      57     195 ..      56     195 .. 0.99

  Alignments for each domain:
  == domain 1  score: 194.6 bits;  conditional E-value: 1.1e-61
        PSDC   2 pvvqelkdliesdprlrmlfssmfeevpskkpykkdptgkkqirdyeellellnhilttapefsdkeeevglvgvPlnalLdwpmgtpsGyalFldpev 100
                 p+++e+k+lie ++r++m+f +mf+e+p+k+py +dptgkkq+r+ye++l++lnhi+t+ape++ ++e+vg+vgvP++a++d+pm+tpsG+a+Fldp+v
  CCE27168.1  57 PAIREFKQLIEGNSRIYMYFVQMFDEIPRKHPYWSDPTGKKQVRNYEHMLQVLNHIVTRAPEWTVAAESVGVVGVPMCAIFDYPMATPSGFAAFLDPDV 155
                 89************************************************************************************************* PP

        PSDC 101 NkalkkiLneWgkfLkspaSasvltteekgWfseealkel 140
                 Nkalkk+LneWgk+L+sp+S +vl ++ +gWf+e ++k++
  CCE27168.1 156 NKALKKVLNEWGKYLQSPESVEVLGNHLEGWFGEVGIKDM 195
                 **********************************999886 PP

>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.0   4.5e-37   2.7e-33       2     179 ..     228     426 ..     227     447 .. 0.84

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 4.5e-37
  PS_Dcarbxylase   2 neffvrklkdgaRpi..dddpgaivsPaDgrilqigeiee.gsviqvKgityslrdLlgeasessadsfkngyfvviyLspgdyHryhaPvsgkv 93 
                      +ff+r+++d aRp+  ++d++ i   +++++ +i++  +    +  Kg++ysl d+l  +    a++f++g++  ++Ls   yHr+h+Pvsg++
      CCE27168.1 228 DDFFTRRVHDSARPVasPEDDNVIANACESKVFNIEHGVRlRDKFFSKGQPYSLVDMLAHDPL--ASEFAGGTIYQAFLSALSYHRWHSPVSGTI 320
                     69*************76666666************776655778888**************99..77**************************** PP

  PS_Dcarbxylase  94 eerrhipGells...........vnpsalkel....rglftlneRvvlvie.w...kGkvavvpvGatnvgsivlnvlkgdelkkGeelGyFqf. 168
                     +++   +G+++s           v + +++ +      l +  +R +++ie      G +a++ +G+  v+s++++v++g+++kkG  lG+F+f 
      CCE27168.1 321 KRAFVEDGTYFSeplfegigdpnVHEIDINGItvaqGYLSAMATRAIIIIEaDnpsIGLMAFIGIGMDEVSSCEITVKEGESVKKGGDLGMFHFg 415
                     *********9997777776666633333333333322444456********736888************************************** PP

  PS_Dcarbxylase 169 GStvvlvfeag 179
                     GS+ +l+f +g
      CCE27168.1 416 GSSHCLIFRKG 426
                     *********99 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.005        30       7      22 ..     314     329 ..     313     330 .. 0.91
   2 ?    4.2   0.1    0.0063        38      15      27 ..     394     406 ..     394     409 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.005
  Biotin_lipoyl_2   7 apvsGrVaqlnVkdGq 22 
                      +pvsG++++ +V+dG 
       CCE27168.1 314 SPVSGTIKRAFVEDGT 329
                      8*************96 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0063
  Biotin_lipoyl_2  15 qlnVkdGqrVkaG 27 
                      ++ Vk+G  Vk+G
       CCE27168.1 394 EITVKEGESVKKG 406
                      588*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3696.49
//
Query:       CCE27169.1  [L=123]
Description: uncharacterized protein CPUR_00641 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-05   25.1   0.0    2.2e-05   24.7   0.0    1.2  1  GST_N     Glutathione S-transferase, N-terminal domain
    3.5e-05   24.1   0.0    4.5e-05   23.8   0.0    1.3  1  GST_N_3   Glutathione S-transferase, N-terminal domain
     0.0017   18.6   0.2     0.0033   17.7   0.0    1.6  2  GST_N_2   Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   3.7e-09   2.2e-05       4      75 ..      12      87 ..       9      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 3.7e-09
                EEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET....TEEEESHHHHHHHHH CS
       GST_N  4 tlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn....gkkltESraIleYia 75
                +ly   gsp  ++i   l+   +e ev  +d++++e+++ ++l + p+g +PaL       +  ++ + aIl+Y+ 
  CCE27169.1 12 ILYLVAGSPQGNSIIGELKSQFLEHEVRYIDLTKNEHRETWFLEISPIGIIPALTETvhgeDIAVFGTAAILRYLH 87
                56666777777777777787889999****************************8878889*************96 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.5e-09   4.5e-05      23      72 ..      37      91 ..      13     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 7.5e-09
                -EEEE---TTTT.HHHHHHH-TT--SSEE...ETTS-..EEESHHHHHHHHHHHH- CS
     GST_N_3 23 pvevvevtpgeh.deellaknplgkvPvL...eddge..altdSlaIidyLeelyp 72
                +v++ ++t+ eh   ++l+++p g +P+L   +++ e  a+++++aI++yL +++ 
  CCE27169.1 37 EVRYIDLTKNEHrETWFLEISPIGIIPALtetVHG-EdiAVFGTAAILRYLHNEFR 91
                4667788888887889*************543344.357************99886 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.6e-07    0.0033      17      69 ..      34      88 ..      25      89 .. 0.80
   2 ?   -3.0   0.1       1.6   9.7e+03      37      47 ..      95     105 ..      91     108 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.6e-07
                --EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-C.TTE..EEESHHHHHHHHHH CS
     GST_N_2 17 lediisvvvlepkgfekseefprlnprgtVPvLwdk.dgq..vineSseIlrylet 69
                le+++  ++l+ k ++++ +f++++p g +P+L  +  g    +  +++Ilryl +
  CCE27169.1 34 LEHEVRYIDLT-KNEHRETWFLEISPIGIIPALTETvHGEdiAVFGTAAILRYLHN 88
                56666666665.5566678***************96655578999*********76 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.6
                 HHHHCTTTSSS CS
     GST_N_2  37 fprlnprgtVP 47 
                  + +np++  P
  CCE27169.1  95 PLPYNPSLRTP 105
                 56788988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1059.68
//
Query:       CCE27170.1  [L=241]
Description: related to URE2-nitrogen catabolite repression regulator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-05   25.9   0.0    1.7e-05   25.1   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    1.9e-05   24.8   0.0    3.1e-05   24.1   0.0    1.3  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    2.2e-05   24.7   0.0    3.7e-05   24.0   0.0    1.4  1  GST_N     Glutathione S-transferase, N-terminal domain
    0.00049   20.3   0.0      0.001   19.3   0.0    1.5  1  GST_C     Glutathione S-transferase, C-terminal domain
     0.0024   17.8   0.0      0.006   16.6   0.0    1.7  2  GST_C_2   Glutathione S-transferase, C-terminal domain
      0.003   17.8   0.0     0.0058   16.9   0.0    1.4  1  GST_N_2   Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   5.7e-09   1.7e-05       7      72 ..      19      89 ..      13      93 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 5.7e-09
                SHHHHHHHHHHHHHT--EEEE---TTTT.HHHHHHH-TT--SSEEETT..S-..EEESHHHHHHHHHHHH- CS
     GST_N_3  7 SpyarrvrlaLnekglpvevvevtpgeh.deellaknplgkvPvLedd..ge..altdSlaIidyLeelyp 72
                Sp  + +   L+   l++ev+ ++ ++   +++l+++p g +P+L+ +  ge  a+++++aI++yL +++ 
  CCE27170.1 19 SPQGNSIIGELKAQYLEYEVHYIDLTKGiEPWFLEISPIGIIPALTETvnGEdvAVFGTAAILRYLHNEFR 89
                555555555555666667776666666557***************654444467************99886 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0     1e-08   3.1e-05      20      80 ..     152     213 ..     135     227 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1e-08
                 HHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH.TCCCC-HHHH CS
     GST_C_3  20 kkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea.ealkkfpklk 80 
                  +++fl+ ++   ++y++++++++++++++gd+ ++AD+a++++++ +  +  +l++ p + 
  CCE27170.1 152 LSADFLKREMLALYGYLNEFYADNEEPFIAGDQPSIADVAVLEWISCHALIgLSLDNDPAIR 213
                 67899*****************88889*****************998887752234445544 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.2e-08   3.7e-05       3      75 ..      11      85 ..       9      86 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.2e-08
                EEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET....TEEEESHHHHHHHHH CS
       GST_N  3 ltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn....gkkltESraIleYia 75
                ++ly + gsp  ++i   l+a  +eyev  +d+++g e  p++l + p+g +PaL       +  ++ + aIl+Y+ 
  CCE27170.1 11 IILYLAAGSPQGNSIIGELKAQYLEYEVHYIDLTKGIE--PWFLEISPIGIIPALTETvngeDVAVFGTAAILRYLH 85
                678889999999999999***************99987..***************9988999*************96 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.4e-07     0.001      27      80 ..     157     217 ..     131     225 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.4e-07
                 HHHHHHHHHHHHHHHHH..TSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT.....TTTSH CS
       GST_C  27 alekvaevlsaleeelk..kqdylvGdkltlADialvpilnwlqrlglafg.....qekfp 80 
                 +++++ + + +l+e ++   + +++Gd++++AD+a+++++ +++ +gl+++     + k+ 
  CCE27170.1 157 LKREMLALYGYLNEFYAdnEEPFIAGDQPSIADVAVLEWISCHALIGLSLDndpaiRGKHE 217
                 5677777888888888887899*********************999998875555555555 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.6   4.8e+03      37      54 ..      71      88 ..      71     103 .. 0.65
   2 !   16.6   0.0     2e-06     0.006      19      44 ..     169     196 ..     131     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.6
                HHHHHHHHHHHHHHHHS- CS
     GST_C_2 37 Dialapflvrlraagpgf 54
                D+a++++   lr+ + +f
  CCE27170.1 71 DVAVFGTAAILRYLHNEF 88
                888888888888776444 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 2e-06
                 TTT---SS...CTTCS--HHHHHHHHHH CS
     GST_C_2  19 eahLadsp..flfGdqptlaDialapfl 44 
                 ++  ad    f++Gdqp++aD+a+  ++
  CCE27170.1 169 NEFYADNEepFIAGDQPSIADVAVLEWI 196
                 4444555566*************99876 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.9e-06    0.0058      17      69 ..      34      86 ..      23      87 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.9e-06
                --EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-C.TTE..EEESHHHHHHHHHH CS
     GST_N_2 17 lediisvvvlepkgfekseefprlnprgtVPvLwdk.dgq..vineSseIlrylet 69
                le++++ ++l +kg e  ++f++++p g +P+L  + +g    +  +++Ilryl +
  CCE27170.1 34 LEYEVHYIDL-TKGIE--PWFLEISPIGIIPALTETvNGEdvAVFGTAAILRYLHN 86
                6777777744.46666..8***************97766687888*********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 2067.22
//
Query:       CCE27171.1  [L=250]
Description: probable theta class glutathione s-transferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-11   44.3   0.0    3.2e-11   43.3   0.0    1.5  2  GST_C     Glutathione S-transferase, C-terminal domain
    1.4e-07   31.4   0.0    2.5e-07   30.6   0.0    1.5  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    9.4e-07   29.0   0.0    1.7e-06   28.1   0.0    1.4  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    1.8e-05   25.1   0.0    4.4e-05   23.8   0.0    1.6  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    0.00036   20.8   0.0    0.00061   20.1   0.0    1.4  1  GST_N     Glutathione S-transferase, N-terminal domain
    0.00071   19.8   0.0     0.0014   18.9   0.0    1.5  1  GST_N_2   Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.3   1.3e+04      79      89 ..      43      53 ..      26      56 .. 0.54
   2 !   43.3   0.0   1.1e-14   3.2e-11      17      90 ..     144     223 ..     121     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.3
                SHHHHHHHHHH CS
       GST_C 79 fpnlkawleri 89
                  + ++w+ +i
  CCE27171.1 43 DEHMQDWYRKI 53
                34555555554 PP

  == domain 2  score: 43.3 bits;  conditional E-value: 1.1e-14
                 H.....HHHHHHHHHHHHHHHHHHHHHHHHHH.TSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHH CS
       GST_C  17 e.....ekkeelvdealekvaevlsaleeelk.kqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerim 90 
                 e      ++++ +d + +++++++ +l+  l   +++  G ++t+ADia ++++  +q +++++  e+fpn+++w+e+++
  CCE27171.1 144 EisggqPRDQQIADYLTNQTRRYFRILDDLLLkSRGCMLGGQPTIADIACFTWAGLHQNRQVGIFLEEFPNVQRWVENMA 223
                 055555799*******************987659*********************77766665555***********996 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   8.4e-11   2.5e-07       8      68 ..     160     220 ..     125     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 8.4e-11
                 HHHCCHCHHHCTTT---SS..CTTCS--HHHHHHHHHHHHH..HHHHHS----TT-HHHHHHHH CS
     GST_C_2   8 leqldaaldaleahLadsp.flfGdqptlaDialapflvrl..raagpgfdireaypnlraWle 68 
                  +q ++ +  l+++L +s+  ++G+qpt+aDia +++ +    r++g    + e++pn+++W+e
  CCE27171.1 160 TNQTRRYFRILDDLLLKSRgCMLGGQPTIADIACFTWAGLHqnRQVG---IFLEEFPNVQRWVE 220
                 5789999******9999999***********9999887665116666...6789********98 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   5.7e-10   1.7e-06      18      87 ..     143     223 ..     125     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 5.7e-10
                 H.........HHHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH..TCC.CC-HHHHHHHHHHH CS
     GST_C_3  18 a.........ekkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea..eal.kkfpklkalyerve 87 
                 +         ++ +++l+++  ++++ ++ +l  k  g ++g++ T+AD+a+f++   +++   ++  ++fp++++++e+++
  CCE27171.1 143 SeisggqprdQQIADYLTNQTRRYFRILDDLLL-KSRGCMLGGQPTIADIACFTWAGLHQNRqvGIFlEEFPNVQRWVENMA 223
                 24555666668899*******************.8999****************99999988874446**********9986 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.5e-08   4.4e-05      17      72 ..      26      94 ..      20      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.5e-08
                HHHHT--..EEEE---TTTT.HHHHHHH-.....TT--SSEEETT...S-..EEESHHHHHHHHHHHH- CS
     GST_N_3 17 Lnekglp..vevvevtpgeh.deellakn.....plgkvPvLedd...ge..altdSlaIidyLeelyp 72
                +  ++l+  v+v +++++eh  ++++++n       g +P+++d+   ge   l+++  I++yL ++y+
  CCE27171.1 26 MAILDLQfvVRVIDISKDEHmQDWYRKINpnsfdSVGSIPAITDTlpnGEiiTLFETGTILEYLADRYD 94
                4455555227789999*************8888888******8876657788888************98 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.1e-07   0.00061      16      75 ..      21      90 ..       7      91 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.1e-07
                HHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTT.....S-SSEEEET.....TEEEESHHHHHHHHH CS
       GST_N 16 rirlllaakgveyevvpldfeageekspellklnpl.....gkvPaLedn.....gkkltESraIleYia 75
                ++  + a +++++ v  +d ++ e+ ++++ k+np+     g +Pa  d        +l+E++ IleY+a
  CCE27171.1 21 SVTSAMAILDLQFVVRVIDISKDEHMQDWYRKINPNsfdsvGSIPAITDTlpngeIITLFETGTILEYLA 90
                5667889999***************99**********************9*995445689*********8 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.8e-07    0.0014      10      69 ..      24      91 ..      21      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.8e-07
                HHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTT.....SSSEEE-..CTTEEEE..SHHHHHHHHHH CS
     GST_N_2 10 ialalkglediisvvvlepkgfekseefprlnprg.....tVPvLwd..kdgqvin..eSseIlrylet 69
                 a+a + l++++ v+ +  k+++  +++ ++np+      ++P++ d  ++g +i+  e+  Il+yl++
  CCE27171.1 24 SAMAILDLQFVVRVI-DISKDEHMQDWYRKINPNSfdsvgSIPAITDtlPNGEIITlfETGTILEYLAD 91
                578889999999888.567999999********9888888*******66699955555*********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2117.36
//
Query:       CCE27172.1  [L=251]
Description: related to URE2-nitrogen catabolite repression regulator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-16   59.2   0.0      6e-16   58.5   0.0    1.4  1  GST_N     Glutathione S-transferase, N-terminal domain
    4.8e-14   52.5   0.0    1.1e-13   51.3   0.0    1.6  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    3.2e-11   43.4   0.0    7.1e-11   42.3   0.0    1.6  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    4.2e-07   30.1   0.0    9.7e-07   28.9   0.0    1.6  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    5.6e-07   29.7   0.0      1e-06   28.9   0.0    1.5  1  GST_C     Glutathione S-transferase, C-terminal domain
      2e-06   27.7   0.0    5.2e-06   26.4   0.0    1.7  2  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0     2e-19     6e-16       3      75 ..       7      83 ..       5      84 .. 0.94

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 2e-19
                EEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET.....TEEEESHHHHHHHHH CS
       GST_N  3 ltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn.....gkkltESraIleYia 75
                +tly+  + p+  +i ++l+++g++yev  +++ ++e+k+p++l +np+g++Pa  d      +  ++ES+aIleY++
  CCE27172.1  7 ITLYTCQT-PNGIKISIALEELGLQYEVRTINMMNNEQKEPWFLEINPNGRIPAITDTlpngeKIRVFESGAILEYLV 83
                79999999.9***********************************************9***877789*********97 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   3.8e-17   1.1e-13       3      73 ..      11      88 ..       9      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 3.8e-17
                S-TTSHHHHHHHHHHHHHT--EEEE---TTTT...HHHHHHH-TT--SSEEETT...S-..EEESHHHHHHHHHHHH-G CS
     GST_N_3  3 gfpaSpyarrvrlaLnekglpvevvevtpgeh...deellaknplgkvPvLedd...ge..altdSlaIidyLeelypg 73
                 + + p+  ++ +aL+e+gl++ev+ ++  ++    +++l++np+g++P+++d+   ge   +++S aI++yL e+y+ 
  CCE27172.1 11 TCQT-PNGIKISIALEELGLQYEVRTINMMNNeqkEPWFLEINPNGRIPAITDTlpnGEkiRVFESGAILEYLVERYDT 88
                5555.99********************86664445****************8776667745556*************96 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   2.4e-14   7.1e-11       7      68 ..      19      83 ..      13      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 2.4e-14
                HHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-..CTTE..EEESHHHHHHHHH CS
     GST_N_2  7 RvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwd..kdgq..vineSseIlryle 68
                ++ ial+++gl++++  + ++ + ++k+++f+++np+g +P++ d  ++g    + eS +Il+yl 
  CCE27172.1 19 KISIALEELGLQYEVRTINMM-NNEQKEPWFLEINPNGRIPAITDtlPNGEkiRVFESGAILEYLV 83
                789***************887.6678889****************66588866777********95 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.2e-10   9.7e-07      23      91 ..     138     207 ..     121     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.2e-10
                 HHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH.TCCCC-HHHHHHHHHHHTSHH CS
     GST_C_3  23 efleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea.ealkkfpklkalyervearpk 91 
                 + +++++ + ++ ++ +l+k+  gy+vgd++T+AD++ + +++++++a  +l++ p++ ++ + + +rp+
  CCE27172.1 138 DRYTNEARRLYRTMDAHLAKSSHGYMVGDRVTIADIVSWGWVSAHSWAgVSLQDCPNVEKWLHMLLKRPG 207
                 5667888999999******99999************************65559********999999986 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.4e-10     1e-06      29      93 .]     142     206 ..     117     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.4e-10
                 HHHHHHHHHHHHHHH..TSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C  29 ekvaevlsaleeelk..kqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimarp 93 
                 ++ ++ +   +++l+   ++y vGd++t+ADi+   ++  +   g+++  ++ pn+ +wl  +  rp
  CCE27172.1 142 NEARRLYRTMDAHLAksSHGYMVGDRVTIADIVSWGWVSAHSWAGVSL--QDCPNVEKWLHMLLKRP 206
                 566777778888888778********************9998888888..6***********99998 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.7e-09   5.2e-06       4      67 ..     137     199 ..     134     200 .. 0.87
   2 ?   -3.4   0.0       3.5   1.1e+04      16      26 ..     229     239 ..     225     243 .. 0.55

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.7e-09
                 HCHHHHHCCHCHHHCTTT---SS...CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHH CS
     GST_C_2   4 veraleqldaaldaleahLadsp..flfGdqptlaDialapflvrlraagpgfdireaypnlraWl 67 
                 ++r  +++++   +++ahLa+s+  ++ Gd+ t+aDi+ ++++     ag      ++ pn+ +Wl
  CCE27172.1 137 IDRYTNEARRLYRTMDAHLAKSShgYMVGDRVTIADIVSWGWVSAHSWAG---VSLQDCPNVEKWL 199
                 788889999*********************************99888888...4567788888886 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.5
                 HHCTTT---SS CS
     GST_C_2  16 daleahLadsp 26 
                 +ale++ a+++
  CCE27172.1 229 EALEERAAKGR 239
                 55555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1914.70
//
Query:       CCE27173.1  [L=614]
Description: related to alcohol oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-67  227.4   0.0    1.1e-66  225.3   0.0    1.8  2  GMC_oxred_N    GMC oxidoreductase
    3.4e-30  105.5   0.0    6.8e-30  104.5   0.0    1.6  1  GMC_oxred_C    GMC oxidoreductase
      0.001   18.2   1.1     0.0018   17.4   1.1    1.3  1  Lycopene_cycl  Lycopene cyclase protein
     0.0038   16.5   1.2     0.0082   15.4   0.4    1.8  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0043   16.3   0.4      0.017   14.3   0.1    1.9  2  Thi4           Thi4 family
  ------ inclusion threshold ------
       0.01   14.9   8.6       0.16   11.0   3.4    3.0  3  FAD_binding_2  FAD binding domain
      0.021   15.1   2.7      0.066   13.5   2.7    1.9  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.059   12.9   5.9      0.074   12.6   4.3    1.9  2  DAO            FAD dependent oxidoreductase
      0.085   12.1   3.1       0.17   11.1   1.4    2.0  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.3   0.0   5.3e-70   1.1e-66       1     295 [.      19     327 ..      19     328 .. 0.95
   2 ?   -0.4   0.0       0.3     6e+02     167     200 ..     537     569 ..     518     578 .. 0.79

  Alignments for each domain:
  == domain 1  score: 225.3 bits;  conditional E-value: 5.3e-70
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrl.imvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRtpaa 97 
                  +d++v+ggG+ag +vA+RL+ed s +v +leagg  +  +  +  a+  +++ ++ ++a+et+p++al gr+l +p+Gk+lGG+s+ N+++++R++++
   CCE27173.1  19 FDYIVVGGGTAGLAVASRLAEDASLTVGILEAGGIAHGDDtVDIPAFYGRSLGGQFDWAFETQPQEALAGRALAWPRGKVLGGTSALNFMTWVRGNKE 116
                  69*********************************999998999999999************************************************ PP

  GMC_oxred_N  98 dldeWeeeaglegwssdevlpafkkvetaqale............sdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngkhqcGv.cll 182
                  d+d+We+  g+egw++d++lp+f+k+et +a+              d  g+ g++++ + ++++sp  k +++  + +G++++     +++ Gv  ++
   CCE27173.1 117 DYDDWEAL-GNEGWAWDKLLPFFQKSETFHAPSqalreeytathgGDALGTSGPIQI-SYAPDYSPSHKLWHATLNGVGVQTSSAHLAGSNVGVwTNI 212
                  *******9.********************99999******999999999********.999********************65555555666651566 PP

  GMC_oxred_N 183 gvtcrtgarqstarawLrpalerpnleiltgakaekiil....egrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLke 276
                  + + ++ a++s ++++L  a    nl+ilt a++  iil     + +  a+GV++   ++   ++v  +kevv++aG+++sPq+L+ SG+G+ + L++
   CCE27173.1 213 NAVDPRTAKRSYSTSYLTAARPT-NLHILTTATVHEIILkkdeAQGDYVATGVRFGHGGQD--HVVSVNKEVVLSAGTIQSPQILEMSGIGNPNVLES 307
                  669*******************9.***************9998778899*******99999..9********************************** PP

  GMC_oxred_N 277 vgvdvvvdlp.vGknLqdHp 295
                   g+ + v  p vG+nLqdH+
   CCE27173.1 308 AGIPTKVASPmVGENLQDHI 327
                  *******************7 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.3
  GMC_oxred_N 167 vprdlngk.hqcGvcllgvtcrtgarqstarawLr 200
                  v++++  + h+ G c +g   r g++ ++ ++ Lr
   CCE27173.1 537 VKENTITDwHPVGTCGMG--GRAGIKGGVVDERLR 569
                  56666666699*******..******999998886 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.0   3.4e-33   6.8e-30       1     144 []     453     603 ..     453     603 .. 0.85

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 3.4e-33
                  ----EEEEEST.......T-TCCEEEEE--TT-SHH...HHHHHHHHHHHHHHHCTSGGG.TTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE- CS
  GMC_oxred_C   1 PesrGrvtlss.......sdptgaplidpnylsdpr...dlaalvealkaarkilaaaal.dvleeeltpgaaeetsdaavesdealekfvkeavlts 87 
                  P+s G+++++        ++ +++plidp y+  ++   d + + +++  a+ki+ +++l dv       +a  ++ ++   +d++l++ vke+++t 
   CCE27173.1 453 PFSVGSIHVKPrsssdetRSGDAKPLIDPAYYAGDHgklDAEIIQQGVLFAQKIASTKPLaDVI------RAPVHPASDVFGDDAQLREWVKENTITD 544
                  6677777776544444556677888*********9999********************632333......3334456678889999999********* PP

                  S--B-TT-B-STCGC..BSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  88 aHplGtcrMGadpkd..sVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  +Hp+Gtc MG ++    +VVD++lrv+gv++LrV+DaSv+P +++a++++t++a+Aeka
   CCE27173.1 545 WHPVGTCGMGGRAGIkgGVVDERLRVYGVRRLRVADASVMPLQISAHIQATVYAIAEKA 603
                  *********98877788****************************************97 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.1     9e-07    0.0018       1      33 [.      20      51 ..      20      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9e-07
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieas 33
                   D +v+G+G Agl++A rl ++ + l v+++ea+
     CCE27173.1 20 DYIVVGGGTAGLAVASRL-AEDASLTVGILEAG 51
                   789***************.88999*******98 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   4.1e-06    0.0082       1      40 [.      19      59 ..      19      68 .. 0.88
   2 ?   -1.1   0.0      0.45   8.9e+02     179     246 ..     218     295 ..     192     303 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.1e-06
                 CSEEEE--SHHHHHHHHHHHH.HTS-EEEEETTHCHHHCSH CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaq.agakvtlvelegtclnggc 40
                 +d++v+GgG AGla+a +la+ a++ v ++e++g  ++++ 
   CCE27173.1 19 FDYIVVGGGTAGLAVASRLAEdASLTVGILEAGGIAHGDDT 59
                 589******************88******999888887765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.45
                  TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE......EEE.EEETTSCE....EEESEEEE-S-EEES-HHCSH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxx.xxxxxxxx....xxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 179 raldkelsaaleealekeGvevklgtsvkeidgnge......kle.vvledgee....idadlvvvavGvrpstellee 246
                  r+ +++ s  +  a +  + ++ + ++v+ei+ +++       ++ v  + g +       + vv+++G   s+++l e
   CCE27173.1 218 RTAKRSYSTSYLTAARPTNLHILTTATVHEIILKKDeaqgdyVATgVRFGHGGQdhvvSVNKEVVLSAGTIQSPQIL-E 295
                  66667777777788888888999999999998877766665422243333333344433335577888888888777.4 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   8.7e-06     0.017      18      49 ..      19      50 ..       9      59 .. 0.88
   2 ?   -1.1   0.0      0.44   8.8e+02     107     134 ..     231     257 ..     211     293 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.7e-06
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailer 49
                 D ++vG+G++GL+ a  la++  l v ile+
  CCE27173.1 19 FDYIVVGGGTAGLAVASRLAEDASLTVGILEA 50
                599***************************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.44
                 HHTSTTEEEEESEEEEEEEEETBTEEEE CS
        Thi4 107 vlqlanvkllnavaveDlivregegvaG 134
                 +   +n+ +l++ +v ++i++++e  +G
  CCE27173.1 231 AARPTNLHILTTATVHEIILKKDE-AQG 257
                 444579999999999999999943.333 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.4     8e-05      0.16       1      32 [.      20      52 ..      20      60 .. 0.85
   2 ?    4.5   0.0    0.0076        15     149     204 ..     230     290 ..     178     313 .. 0.81
   3 ?    0.5   0.0      0.13   2.6e+02     192     278 ..     497     576 ..     482     604 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8e-05
                   SEEEE--SHHHHHHHHHHHH.TTT-EEEEESSS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaae.aGlkvavvekeq 32
                   D iV+G+G AGLa A ++ae a l+v ++e ++
     CCE27173.1 20 DYIVVGGGTAGLAVASRLAEdASLTVGILEAGG 52
                   88******************5555999988765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0076
                    HHHHTCTEEEEESEEEEEEEECTTEEEEEEEEET....TTTCEE.EEEESEEEE-----GG CS
  FAD_binding_2 149 esarkagvdfqerteadeLivedgrvtGavvenp....esgrev.rirakavvlatgGfgr 204
                    ++ar  ++++++ + + e+i +++++ G++v+      ++g+++  +++k vvl +g ++ 
     CCE27173.1 230 TAARPTNLHILTTATVHEIILKKDEAQGDYVATGvrfgHGGQDHvVSVNKEVVLSAGTIQS 290
                    44555669999***********9999999999779998555555277777*******9987 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.13
                    ESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSS.EES..TT-EEEEEEEET....TTTB...B--THHHHTT-EEE CS
  FAD_binding_2 192 akavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaa.lnddrmeevqfhPtslvpirdgsgi...LitealrgeGgilv 278
                     ++v+ a+  ++     + l+ +  a +  a  v+Gd+ +l ++++ + ++d       +hP+++ +++ ++gi   +++e+lr  G+  +
     CCE27173.1 497 QQGVLFAQKIAST----KPLADVIRAPVHPASDVFGDDAQLREWVKENtITD-------WHPVGTCGMGGRAGIkggVVDERLRVYGVRRL 576
                    5556666555554....44555666666666778899999888888887888.......**************999999999998887655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.7   3.3e-05     0.066       1      28 [.      23      51 ..      23      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.3e-05
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekr 28
                   +vG+G +Gl+ A++La++  + v +le++
     CCE27173.1 23 VVGGGTAGLAVASRLAEDaSLTVGILEAG 51
                   8***************9779999999986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   4.3   3.7e-05     0.074       1      35 [.      20      56 ..      20      60 .. 0.87
   2 ?   -1.5   0.0      0.74   1.5e+03     148     201 ..     224     286 ..     126     304 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.7e-05
                EEEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekgdiagsg 35
                d +++GGG +Gl++A  La+     V +le+g  +++g
  CCE27173.1 20 DYIVVGGGTAGLAVASRLAEDAsltVGILEAG-GIAHG 56
                789***************9985599*******.55545 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.74
                 HHHHHHHHHHHTT-EEEESECEEEE..EEEETCEEEEE......EECTEEEE......EEEE.EEE--G CS
         DAO 148 ltaalaraaealGveilegtevtgl..eeedgkvwgve......rttpgend......aada.vVnaaG 201
                 +  +++ aa+    +il+ ++v ++  ++++ ++  v       +             ++++ vV++aG
  CCE27173.1 224 YSTSYLTAARPTNLHILTTATVHEIilKKDEAQGDYVAtgvrfgH------GgqdhvvSVNKeVVLSAG 286
                 444555556666666666666666533222233333322221321......022223333445777777 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.4   8.4e-05      0.17       1      33 [.      22      54 ..      22      60 .. 0.90
   2 ?   -0.2   0.0      0.23   4.6e+02     125     147 ..     278     300 ..     192     310 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.4e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnig 33
                 i++G+G aGla+a  l +    ++ ilE g i 
   CCE27173.1 22 IVVGGGTAGLAVASRLAEDASLTVGILEAGGIA 54
                 89*************99988889*****99765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.23
  Pyr_redox_3 125 AkkviiAtGefdkPnklnipGee 147
                   k+v++++G  + P+ l+++G  
   CCE27173.1 278 NKEVVLSAGTIQSPQILEMSGIG 300
                  35677777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4191.92
//
Query:       CCE27174.1  [L=393]
Description: uncharacterized protein CPUR_00646 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-06   28.5  17.3      3e-06   27.2  17.3    1.7  1  bZIP_2        Basic region leucine zipper
     0.0001   22.3  17.3    0.00018   21.6  17.3    1.4  1  bZIP_1        bZIP transcription factor
  ------ inclusion threshold ------
        1.4    8.0   5.4        2.5    7.2   5.4    1.3  1  SprA-related  SprA-related family
        3.1    8.4  16.9       0.16   12.5  11.2    1.8  2  bZIP_Maf      bZIP Maf transcription factor
        7.2    4.8   7.5        9.8    4.3   7.5    1.1  1  CDC45         CDC45-like protein


Domain annotation for each model (and alignments):
>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2  17.3   8.4e-10     3e-06       2      45 ..     114     158 ..     111     173 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 8.4e-10
                 XXXXXXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   2 ddeyrerRr.kNreAarrsRekkkakeeeleervkeLeeeNaqLr 45 
                 ++++r++R  +Nr+Aa++sRe+k+++ e le r++eLe++ ++ +
  CCE27174.1 114 KEQRRVERVlRNRRAAQSSRERKRLEVEALEIRNQELENQLMKAQ 158
                 68999**********************************988765 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6  17.3   4.9e-08   0.00018       1      59 [.     113     171 ..     113     175 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 4.9e-08
                 XXXXXXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelKrekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevekL 59 
                 eke +r  r ++NR aA+ sR+RK+ e+e+Le r ++Le++ ++ ++++  l++e +  
  CCE27174.1 113 EKEQRRVERVLRNRRAAQSSRERKRLEVEALEIRNQELENQLMKAQKTNMYLMEELKRV 171
                 7999*************************************999999999999987765 PP

>> SprA-related  SprA-related family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.4   0.00068       2.5     118     202 ..      66     150 ..      42     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00068
  SprA-related 118 kekeqqkkdeqsqqerekvaqeqkq.kqvfaketqeSnaqqsqeEndiaktreqekireqekqaaekaieaqkaqveqLkkRdaEV 202
                   +e+e+ +   +++  ++k+++++k+  qv  + + + + ++ ++ +d +++r+ e++  + +  a+ + e+++ +ve+L+ R++E 
    CCE27174.1  66 EEQENTTPSPEDDTSGKKQTKKRKSwGQVLPEPKTNLPPRKRAKTDDEKEQRRVERVLRNRRA-AQSSRERKRLEVEALEIRNQEL 150
                   578888888888999999888777635888887777777777777799999999999887776.889999*************997 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3         2     7e+03      44      64 ..      52      72 ..      50      89 .. 0.68
   2 ?   12.5  11.2   4.4e-05      0.16      27      86 ..     114     173 ..     100     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
    bZIP_Maf 44 scrkrrlqqkeelekekeele 64
                +c +r+++q     +e+e++ 
  CCE27174.1 52 TCTDRQTSQLPVISEEQENTT 72
                677888888777766666654 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.4e-05
    bZIP_Maf  27 erLKqrRRrlKNrgyakscrkrrlqqkeelekekeeleeelerlqqelsrlrqekdalkr 86 
                 ++ ++  R l+Nr +a+s+r+r+  + e le  ++ele++l + q+++  l +e+ +++r
  CCE27174.1 114 KEQRRVERVLRNRRAAQSSRERKRLEVEALEIRNQELENQLMKAQKTNMYLMEELKRVRR 173
                 444666699******************************************999998876 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   7.5    0.0027       9.8     149     243 ..      66     170 ..      40     175 .. 0.53

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0027
       CDC45 149 eeeeeeedeedeeedeeeskkkrksksdeeee.........sddddersrkrrrse..psakklrrqlkkerrkyeavlekyysqgtsygesvsslmYs 236
                 ee+e+++ + ++++++++++kkrks+ +   e         ++++d+++++rr ++  +++++++++++++r + ea   ++ +  +   ++  + mY 
  CCE27174.1  66 EEQENTTPSPEDDTSGKKQTKKRKSWGQVLPEpktnlpprkRAKTDDEKEQRRVERvlRNRRAAQSSRERKRLEVEALEIRNQELENQLMKAQKTNMY- 163
                 34444444555556666667777766555444444455554222222222222222233334444445555555555555555566666666666666. PP

       CDC45 237 Laselgr 243
                 L++el+r
  CCE27174.1 164 LMEELKR 170
                 4555655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1422  (0.0793128); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2787.74
//
Query:       CCE27175.1  [L=387]
Description: uncharacterized protein CPUR_00647 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-30  103.6   0.1    7.2e-30  102.8   0.1    1.4  1  Swi3      Replication Fork Protection Component Swi3
  ------ inclusion threshold ------
       0.15   12.1   0.3         18    5.4   0.1    3.3  3  P4Ha_N    Prolyl 4-Hydroxylase alpha-subunit, N-terminal regi


Domain annotation for each model (and alignments):
>> Swi3  Replication Fork Protection Component Swi3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.1   8.1e-34   7.2e-30       1      81 [.      68     148 ..      68     150 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 8.1e-34
        Swi3   1 kldeerLlsekGlpaLrknfkklkfkgkgheaedlkkllqfyqlWahrLfPkakfkdflekveklgkkkevktyrkelree 81 
                 klde+rLl+++Glp+Lrk++++l++kgkghe++d ++ll+fyq W+++LfPkakf d+l++veklg+kk++  +r+e+ +e
  CCE27175.1  68 KLDESRLLGPSGLPKLRKRARDLNLKGKGHEFSDAARLLSFYQIWLDDLFPKAKFLDALTMVEKLGHKKQIVVARNEILNE 148
                 8****************************************************************************9887 PP

>> P4Ha_N  Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.026   2.3e+02     100     118 ..     200     219 ..     194     221 .. 0.82
   2 ?    5.4   0.1     0.002        18     101     119 ..     226     244 ..     213     266 .. 0.63
   3 ?   -2.7   0.0      0.61   5.5e+03     100     116 ..     270     287 ..     259     287 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.026
      P4Ha_N 100 s.lPteeDlegaakallrLq 118
                 + +P+eeDl ga+  ++r q
  CCE27175.1 200 EdVPDEEDLYGATPRVVRQQ 219
                 449*********99999877 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.002
      P4Ha_N 101 lPteeDlegaakallrLqd 119
                 +P+eeDl ga+  ++r q+
  CCE27175.1 226 IPDEEDLYGATPRIVRQQQ 244
                 6666666666666666554 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.61
      P4Ha_N 100 s.lPteeDlegaakallr 116
                 s + ++eDl ga+  ++r
  CCE27175.1 270 SdILDDEDLYGATPRIVR 287
                 346789999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2744.42
//
Query:       CCE27176.1  [L=193]
Description: probable NADH-ubiquinone oxidoreductase 21 kDa subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-28   97.5   0.1      1e-27   96.6   0.1    1.5  1  NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21
    1.9e-25   88.6   0.0    2.6e-25   88.2   0.0    1.2  1  NADH_u_ox_C      C-terminal of NADH-ubiquinone oxidoreductase


Domain annotation for each model (and alignments):
>> NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.1   1.1e-31     1e-27       2      82 .]      22     107 ..      21     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 1.1e-31
  NADH-u_ox-rdase   2 paYpvIdsdPsfsrvlrnfrpsDYvkaaaitaafplallaleklsPsvagka.....mtlagligflggfllayqnssqRLkGfrE 82 
                      ++Yp+Id+dP+f+rv++++r sDYv+   ++ ++p+all+ ek++Ps++gk+     m+l+g ig++ggfl++yq+ss R++G++E
       CCE27176.1  22 SDYPLIDNDPHFKRVVGYARASDYVAGGLAASFAPCALLVAEKFAPSNVGKGgfapiMRLTGGIGVIGGFLYFYQRSSLRFYGMTE 107
                      79****************************99******************99********************************98 PP

>> NADH_u_ox_C  C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0   2.9e-29   2.6e-25       1      77 [.     116     190 ..     116     193 .] 0.95

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 2.9e-29
  NADH_u_ox_C   1 ryeikkllsqgklpYkenesvLddrlkdvanRnsqysalllailPWFnlayhpyhgvdlkkYYenregeeewgfklk 77 
                  ++e+ ++++ gk++Y  +es+L++++++va+R+s+ysal++ ++PWFn+++h +hgvd++kYY+++e e e ++ + 
   CCE27176.1 116 MREMVDRVKAGKSLY--GESQLTPHMQGVAARQSRYSALAMGLIPWFNFVNHSQHGVDTAKYYQQAERELEAERGGA 190
                  689************..****************************************************99987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.71
# Mc/sec: 818.03
//
Query:       CCE27177.1  [L=102]
Description: uncharacterized protein CPUR_00649 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-19   67.5   7.1      1e-18   67.0   7.1    1.2  1  Hydrophobin_2  Fungal hydrophobin


Domain annotation for each model (and alignments):
>> Hydrophobin_2  Fungal hydrophobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   7.1   5.7e-23     1e-18       1      63 [.      39      97 ..      39      98 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 5.7e-23
  Hydrophobin_2  1 CpsglysspqcCatdvlgvadldCatpsktptsaaefkaiCaasgqqakCCvlpvagqallCq 63
                   Cp+ lys p cC+tdvlg++ ldC+tps    s+ ++k++Ca++g+q  CC + + g ++lC+
     CCE27177.1 39 CPDFLYSVPSCCSTDVLGILGLDCSTPS----STWNLKSTCASGGKQTLCCSIHLEGLGVLCT 97
                   *************************988....8999**************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 740.09
//
Query:       CCE27178.1  [L=384]
Description: uncharacterized protein CPUR_00650 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0018   18.8   0.0     0.0032   17.9   0.0    1.4  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.047   14.4   0.0      0.084   13.6   0.0    1.4  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.6e-07    0.0032      19      98 ..     232     329 ..     201     332 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.6e-07
                   ---EEEEEESSSEEEEEEE-TT---EE.EE.TE..EEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGS................EEEE CS
  2OG-FeII_Oxy  19 ilglgahtdaslltillqddvgglevf.kd.gk..wlrvppvdnslivniGdallflsngryksvlHrVlpvneger................Rvsi 95 
                   ++  g htd ++lti   +   gl +  ++ g    +++pp  n l+v++G +l+ l++g  +   H+V  vn++                  R+s+
    CCE27178.1 232 TILAGFHTDLNFLTIHGRSRYPGLNIWaRNtGAriAVKIPP-GNYLLVQAGKQLEHLTGGLITAGYHEVV-VNKQTLdavskrrrespdrplvRISS 326
                   333699********9888889***99644445546666665.89*************************9.98854344555555556666666666 PP

                   EEE CS
  2OG-FeII_Oxy  96 ayf 98 
                   ++f
    CCE27178.1 327 TLF 329
                   665 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.4e-06     0.084       1      61 [.      18      82 ..      18     119 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.4e-06
      DIOX_N  1 iPvidlspl.sdded...raavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeee 61
                +P+idl  +  +d++    +a++++  +A+ ++G +++    v e++  + +++++++Fa+Pe+ 
  CCE27178.1 18 LPIIDLDIYlHNDPSsplVRAECAKAASALITYGALILHDSRVLESDNTAFLDLLEDYFAQPESA 82
                7******7783333323368889999************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2938.04
//
Query:       CCE27179.1  [L=526]
Description: uncharacterized protein CPUR_00651 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-25   90.2  29.4    3.5e-24   85.2  29.4    2.2  1  Xan_ur_permease  Permease family
    8.2e-05   21.5  17.7    0.00024   20.0  15.0    2.7  2  Sulfate_transp   Sulfate permease family
  ------ inclusion threshold ------
        1.1    9.7  19.8       0.22   11.9   2.7    3.0  2  MFS_MOT1         Molybdate transporter of MFS superfamily


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2  29.4   5.9e-28   3.5e-24      34     385 ..      42     426 ..      34     429 .. 0.82

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 5.9e-28
                      .....H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-....HHHHHHHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHH CS
  Xan_ur_permease  34 elr.qlisatllasGiatllqllifgirlpillgssfafvtalmialGsaedieialagllgallvagvlfilisltglrgrlarlipPvvtgp 126
                      +++  +++at  +s++a++++ ++++++++++ g++++++ a+ ++ G   +  + ++++l a++v g +f+ ++++glr++lar+ip+ + ++
       CCE27179.1  42 DIKqDIVTATAAISALACVAMGIAANLPVALAPGMGLNAYFAY-TVVGRHGTGPVPYRVALTAIFVEGWIFLGLAVLGLRQWLARAIPHSIKVA 134
                      555578999999***************************9954.5555557799**************************************** PP

                      HHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHS.SSTTTTTHHHHHHHHHHHHHHHHHHHTTSSHH.......... CS
  Xan_ur_permease 127 vvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvf.lkglfsqlpiLigiiagwllalfmgivnlspe.......... 209
                      + ++iGl l+ i+++   g+   v     +    ++la   +   l+  ++     ++  ++ igi++g +l + ++++ ++++          
       CCE27179.1 135 TGVGIGLYLTLIGLTYSEGIGLVVG----ATATPVELAGCSPGNRLKDGTCpSWDKMRFPAMWIGIFCGGILTVLLTMFRFKGAiiigillvsi 224
                      **************99888852222....23344444555555555555554444455556778999999999999999999999999999999 PP

                      ............................HHS-SS-----------HH..H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TIIIIIHHH...H CS
  Xan_ur_permease 210 ............................vseapwfqlpsplkfgtplfnlgliltvlavalvavvesvGdiravakvvgrslkpkpdlrr...a 272
                                                  v+ +p ++  +   +  ++   +  l++++++ v +++++G+++ +a+++g+ ++  +d +    a
       CCE27179.1 225 iswpratpvtyfpytdvgdaqfnffkkvVTFHPIQKTLNVQDWNVSEYGGQFGLALITFLYVDILDATGTLYSMARFAGLMDPVTQDFEGsavA 318
                      999999999999999*8888888877773333333333333444444555556666777779*****************888876666652227 PP

                      HHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-S CS
  Xan_ur_permease 273 lladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdlds 366
                      +++d + + +++l+G++pvt+++e+ ++++ +    +++++ + v  +++ +  ++a+ ++sIP  + +G  l+++g+++as+v +++++ + +
       CCE27179.1 319 YMVDAVCISIGALFGVPPVTAFIESGAGISEG----GKTGLSTVVTGLCFFIAVFFAPIFASIPPWA-TGCVLILVGSMMASAVPEINWKYMGD 407
                      889*****************************....******************************9.9999999******************* PP

                      HHHHHHHHHHHHHHHH--- CS
  Xan_ur_permease 367 arnllivavslvlGlgvat 385
                      a  +++  + + ++ ++a 
       CCE27179.1 408 AVPAFLAICLMPFTYSIAN 426
                      *************999875 PP

>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0  15.0     4e-08   0.00024      80     358 ..      96     395 ..      47     403 .. 0.69
   2 ?    0.9   0.0     0.025   1.5e+02     231     262 ..     395     426 ..     390     434 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4e-08
  Sulfate_transp  80 gieiattltllaGviqvllGllRL.gflveflseavlsGfiaGaaivillsqikvllgle....rvskkeslv......svlsslftnlekvnla 163
                       ++a+t++++ G i++ l +l L ++l++ +++++ ++  +G+++ + l  + ++ g+      ++++ +l       +    +  +++k++++
      CCE27179.1  96 PYRVALTAIFVEGWIFLGLAVLGLrQWLARAIPHSIKVATGVGIGLYLTLIGLTYSEGIGlvvgATATPVELAgcspgnRLKDGTCPSWDKMRFP 190
                     56899**********9999999997789********************99999999888843432222222221111113334566677779999 PP

  Sulfate_transp 164 kvvlgllllvvLlvtkellkklkkllvipapaelvaviv...atlvsaif.......elkreagvkivgeipsglpelslpkvdwslls.allpd 247
                     ++ +g+++  +L+v   +++ +    +i++ + lv++i    at v++++       + +  ++v+    +    ++l+++++++s    + +++
      CCE27179.1 191 AMWIGIFCGGILTVLLTMFRFK---GAIIIGILLVSIISwprATPVTYFPytdvgdaQFNFFKKVV---TFHPIQKTLNVQDWNVSEYGgQFGLA 279
                     9999999999998888876644...44455555555553333788888887654422222222233...33444456667766666654155555 PP

  Sulfate_transp 248 alaialvglle....aiavsksldkkkgykvdsnkELvAlGfs..NilsslfgglpatgafsrsavnikaGaktqlsglvsalvvllvllvltpl 336
                     +++   v +l+      ++++ ++ +   + d +   vA  +    i  + + g+p  +af  s   i+ G+kt ls++v++l+ ++  ++++p+
      CCE27179.1 280 LITFLYVDILDatgtLYSMARFAGLMDPVTQDFEGSAVAYMVDavCISIGALFGVPPVTAFIESGAGISEGGKTGLSTVVTGLCFFI-AVFFAPI 373
                     55566677888333223445555555555555555555544431146667788999999************************9766.57899** PP

  Sulfate_transp 337 leyiPkavLaaiiivagkglLv 358
                     ++ iP ++ ++++i++g+ +  
      CCE27179.1 374 FASIPPWATGCVLILVGSMMAS 395
                     ***************9988644 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.025
  Sulfate_transp 231 lslpkvdwsllsallpdalaialvglleaiav 262
                       +p+++w+++ + +p+ lai l+ ++ +ia 
      CCE27179.1 395 SAVPEINWKYMGDAVPAFLAICLMPFTYSIAN 426
                     56899*******************99999985 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.7   3.7e-05      0.22      29     109 ..      48     141 ..      21     150 .. 0.81
   2 ?    2.2   9.3     0.038   2.3e+02      26     109 ..     311     391 ..     269     393 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.7e-05
    MFS_MOT1  29 ltalllsvGlmnlltglfggvPmc.........hgAgglaaqyrf....gartgaagillGlvllllgltgllerllrliPksvlgglllgaGl 109
                 +ta++ +++l+ +++g++ ++P++           A  +++++           +a+++ G ++l l+++gl ++l+r+iP+s+  +  +g Gl
  CCE27179.1  48 VTATAAISALACVAMGIAANLPVAlapgmglnaYFAYTVVGRHGTgpvpYRVALTAIFVEGWIFLGLAVLGLRQWLARAIPHSIKVATGVGIGL 141
                 677888899999999999999999988887776555555555444888555667788888***********************98777777776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.038
    MFS_MOT1  26 slsltalllsvGlmnlltglfggvPmc...hgAgglaaqyrfgartgaagillGlvllllgltgllerllrliPksvlgglllgaGl 109
                 +++ +a++ +v ++ + +g ++gvP       +g+ +++   g +tg + +++Gl++++  ++     + + iP    g +l+ +G 
  CCE27179.1 311 DFEGSAVAYMVDAVCISIGALFGVPPVtafIESGAGISE---GGKTGLSTVVTGLCFFIAVFF---APIFASIPPWATGCVLILVGS 391
                 555677777887888888888888866675333333444...99***********98775554...588999999999988888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3911.66
//
Query:       CCE27180.1  [L=356]
Description: uncharacterized protein CPUR_00652 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      131  (0.0073066); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2655.44
//
Query:       CCE27181.1  [L=151]
Description: uncharacterized protein CPUR_00653 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.002   18.0   5.5     0.0026   17.6   4.5    1.6  2  VIT1             VIT family
     0.0028   17.7  16.8      0.003   17.6   9.7    2.2  2  MARVEL           Membrane-associating domain
  ------ inclusion threshold ------
      0.017   15.0   9.9      0.023   14.6   9.9    1.2  1  7TMR-DISM_7TM    7TM diverse intracellular signalling
          1    8.4   9.6        1.2    8.2   9.6    1.2  1  ABC2_membrane_3  ABC-2 family transporter protein
          1    9.6   2.8       0.52   10.6   0.7    1.5  2  PBP_N            Penicillin-binding protein N-terminus
        1.7    8.1   8.7      0.038   13.5   1.4    1.8  2  MTABC_N          Mitochondrial ABC-transporter N-terminal fiv
        4.4    7.7  10.4       0.98    9.8   2.6    2.6  2  DUF4199          Protein of unknown function (DUF4199)


Domain annotation for each model (and alignments):
>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.3    0.0042        11     168     211 ..      16      59 ..       4      61 .. 0.83
   2 !   17.6   4.5     1e-06    0.0026     128     211 ..      37     133 ..      18     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0042
        VIT1 168 vsiavtllalllfGavkalltgssklvsalrmlliGalAaaaay 211
                 + +++++lal++ G+ ++ l++     + +  +++G+l a+  +
  CCE27181.1  16 LHLVCFALALAVCGLYGQDLSSNHHNSKWVYAVVVGSLSAITCV 59 
                 34568899*************9999999999******9998765 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1e-06
        VIT1 128 seelasplkaAlssalsfliGgliPllpylfvesvglalvvsiavtllalllfGavkallt.............gssklvsalrmlliGalAaaaay 211
                 s++++s +  A++++ + +i  +i  +p+l+ +s++ +  + +++++l ++lfG++++l+              +  ++v  ++ ll+ + A +a++
  CCE27181.1  37 SNHHNSKWVYAVVVGSLSAITCVIYFIPALLRHSGIIGAGWNFILFILWIALFGVFGSLFIhenpegnggiqrmKNAVWVDLVSALLWLVSAVGATF 133
                 3445899************************99****************************999999999998544447777777777777777776 PP

>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   9.7   1.2e-06     0.003       9      92 ..      16      94 ..      10     102 .. 0.79
   2 ?    4.4   0.6     0.014        35      82      95 ..     116     129 ..     106     148 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
      MARVEL  9 lrilqlvfaiiilgliasliakldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlv 92
                l ++++++a+ + gl ++ +       ++ +s++ +av+v+ +s ++++++++++l+++s +  + w +i++i+   ++ ++  
  CCE27181.1 16 LHLVCFALALAVCGLYGQDL-----SSNHHNSKWVYAVVVGSLSAITCVIYFIPALLRHSGIIGAGWNFILFILWIALFGVFGS 94
                45555666666666666666.....8999*************************999888888888888888888777766655 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.014
      MARVEL  82 vdalaallwlvafi 95 
                 vd++ allwlv+++
  CCE27181.1 116 VDLVSALLWLVSAV 129
                 45555555555543 PP

>> 7TMR-DISM_7TM  7TM diverse intracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   9.9   9.1e-06     0.023      27     150 ..       6     141 ..       1     146 [. 0.66

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.1e-06
  7TMR-DISM_7TM  27 rdksylyYalyllsfllyllslngllfqylwpnappalnnkllyltlllllilfll.Farsflelkk.kp....rllklllllavllsllllllpl 116
                     + sy+ ++++ l+++ + l++ gl  q l +n++ +  +    ++ +l++i++++ F+  +l+  +           +l++l+++l++++ +l++
     CCE27181.1   6 TSVSYFAFSALHLVCFALALAVCGLYGQDLSSNHH-NSKWVYAVVVGSLSAITCVIyFIPALLRH-SgIIgagwN--FILFILWIALFGVFGSLFI 97 
                    56789999999988888888899999999988777.888888888888888888888*******9.524478542..3444444443455555444 PP

  7TMR-DISM_7TM 117 l.......pyteslslaq..........llallvillllligikawrkgnk 150
                                    +q          + all++++++ + +++w+ +++
     CCE27181.1  98 HenpegngG-------IQrmknavwvdlVSALLWLVSAVGATFYWWKYRDH 141
                    433223332.......33333344467788888999999999999944443 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   9.6   0.00045       1.2     209     294 ..       9     102 ..       4     133 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00045
  ABC2_membrane_3 209 kilgdflvyllqlllilll..afgl..gipfgnlglllllfllfglayialgyllsslfknseta....qilifivilllsgffgglfpledlp 294
                      ++++  +++l++++l+l++  ++g   + +  n+ ++  +++  + a+++++y++ +l + s+      + ++fi+++ l+g+fg lf+ e+++
       CCE27181.1   9 SYFAFSALHLVCFALALAVcgLYGQdlSSNHHNSKWVYAVVVGSLSAITCVIYFIPALLRHSGIIgagwNFILFILWIALFGVFGSLFIHENPE 102
                      566667777777777777655566576555558888888888888899999*******999977633445566666667777777778888887 PP

>> PBP_N  Penicillin-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.9   1.2e+04      82      97 ..      42      56 ..      38      60 .. 0.59
   2 ?   10.6   0.7    0.0002      0.52      82     113 ..     111     140 ..     105     150 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.9
       PBP_N 82 grwvwgtllvvvllav 97
                 +wv+  ++v+ l a+
  CCE27181.1 42 SKWVYA-VVVGSLSAI 56
                567765.456666555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0002
       PBP_N  82 grwvwgtllvvvllavlsvasgaayvwfkylk 113
                  + vw  l v+ ll ++s a ga++ w+ky  
  CCE27181.1 111 KNAVWVDL-VSALLWLVS-AVGATFYWWKYRD 140
                 45567666.556666665.6799999****65 PP

>> MTABC_N  Mitochondrial ABC-transporter N-terminal five TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.4   1.5e-05     0.038      21      87 ..       3      67 ..       1     101 [. 0.77
   2 ?   -1.6   0.9      0.62   1.6e+03     144     169 ..     118     144 ..     113     146 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
     MTABC_N 21 CFldtlvssvllgllllfgtlqlilyrkygtelepkaiprsrlyklqlvlallllllalarlilraa 87
                CF ++++  ++++l l++++l+l++   yg++l++++ +++ +y   +v+  l ++ +++ +i    
  CCE27181.1  3 CFSTSVSYFAFSALHLVCFALALAVCGLYGQDLSSNHHNSKWVY--AVVVGSLSAITCVIYFIPALL 67
                ***********************************999999999..566666666666666665444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.62
     MTABC_N 144 fvaenlafvswns.edwWfklktlkdq 169
                 +v+  l +vs    + +W+k ++ + q
  CCE27181.1 118 LVSALLWLVSAVGaTFYWWKYRDHQSQ 144
                 455666667654404577788777655 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   9.3       5.2   1.3e+04       6      55 ..      54      66 ..      13      97 .. 0.43
   2 ?    9.8   2.6   0.00038      0.98       5      59 ..      80     142 ..      71     149 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.2
     DUF4199  6 lglvwilifllilyllglhqilstgpllgllallllllvpflvylalkky 55
                 ++ ++++f+                                      + 
  CCE27181.1 54 SAITCVIYFI-------------------------------------PAL 66
                2222222222.....................................111 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00038
     DUF4199   5 ilglvwilifll.ilyllglh.qi.lstg.......pllgllallllllvpflvylalkkyrkkn 59 
                 il+++wi++f +   ++++++ +     g       +++ l++ ll+l++ +++ ++ +kyr+++
  CCE27181.1  80 ILFILWIALFGVfGSLFIHENpEGnG--GiqrmknaVWVDLVSALLWLVSAVGATFYWWKYRDHQ 142
                 67777777776655555554433222..1334455599999999999999*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1172.74
//
Query:       CCE27182.1  [L=359]
Description: uncharacterized protein CPUR_00654 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2627.12
//
Query:       CCE27183.1  [L=103]
Description: uncharacterized protein CPUR_00655 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-21   74.0   0.1    8.2e-21   73.9   0.1    1.0  1  Thioredoxin    Thioredoxin
    2.5e-06   27.1   0.1    2.7e-06   26.9   0.1    1.1  1  OST3_OST6      OST3 / OST6 family, transporter family
    8.3e-05   23.0   0.4    0.00082   19.8   0.4    2.1  1  Thioredoxin_2  Thioredoxin-like domain
    0.00027   21.1   0.6    0.00058   20.0   0.2    1.7  2  Thioredoxin_7  Thioredoxin-like
    0.00039   20.7   0.2     0.0038   17.5   0.2    2.1  1  Thioredoxin_8  Thioredoxin-like
     0.0081   15.9   0.0     0.0089   15.8   0.0    1.2  1  Thioredoxin_9  Thioredoxin
     0.0084   15.9   0.3       0.49   10.2   0.0    2.1  2  DSBA           DSBA-like thioredoxin domain
  ------ inclusion threshold ------
      0.094   12.6   0.1       0.16   11.9   0.1    1.4  1  AhpC-TSA       AhpC/TSA family
       0.31   11.3   1.6        1.1    9.5   1.6    1.9  1  Glutaredoxin   Glutaredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.1   4.1e-24   8.2e-21       5     102 ..       5      99 ..       1     100 [. 0.94

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 4.1e-24
                  SSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHHH CS
  Thioredoxin   5 ltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaaflk 102
                   ++++F++ +++ +  ++  F++++C +C  ++P++++la ++k +v+++ +dvd+n+dla++y+v+g+Pt+ +fk  k++++  g +e e+l+a++k
   CCE27183.1   5 SSAAEFDKLLRQ-SPRLIAHFTSNYCKPCSWINPKYNQLAARYK-NVVFVVIDVDANRDLATRYKVDGMPTFFMFKRTKKMDECFGLNE-ETLEAKVK 99 
                  56789******9.99999**************************.*****************************************999.99999887 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   1.4e-09   2.7e-06      34     109 ..      21      84 ..       2     102 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.4e-09
   OST3_OST6  34 vvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpk 109
                 ++ +T++     C++C  ++p+++++a  +++        ++F+ +d+d ++d+  ++++   P +++f+ +k+ +
  CCE27183.1  21 IAHFTSN----YCKPCSWINPKYNQLAARYKN--------VVFVVIDVDANRDLATRYKVDGMPTFFMFKRTKKMD 84 
                 5555555....6***************97755........59*****************************88766 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.4   4.1e-07   0.00082       7      96 ..      19      86 ..      13      98 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.1e-07
  Thioredoxin_2  7 pvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgkeivarl 96
                   +++++ft++ C  C  ++ +  +l     r     +k+ +  ++v i+ ++++           +la +y+v+g+Pt++++  +++ ++ 
     CCE27183.1 19 RLIAHFTSNYCKPCSWINPKYNQL---AAR-----YKN-V--VFVVIDVDANR-----------DLATRYKVDGMPTFFMFKRTKKMDEC 86
                   789999999999999999977777...555.....544.3..55555555555...........478************99888555555 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   2.9e-07   0.00058      16      81 ..      15      77 ..       4      79 .. 0.78
   2 ?   -2.6   0.0       3.2   6.3e+03      31      44 ..      85      98 ..      82     102 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.9e-07
                   HT--EEE.EE--TT-HHHHHHHHHHHH-HHHHH.HH.HT-EEEEESS.--S-GGG.-TT---SSEEEEE CS
  Thioredoxin_7 16 rgkpvlv.ffgaswcftCqalerdflsdeevkaala.ekfvllrvdv.terdanileldeqgvPvvafl 81
                   r++p l+  f++++c +C +++     +++++ a++ +++v++ +dv  +rd  + +++ +g P+++++
     CCE27183.1 15 RQSPRLIaHFTSNYCKPCSWIN-----PKYNQLAARyKNVVFVVIDVdANRDLAT-RYKVDGMPTFFMF 77
                   6677777588**********75.....7888888999**********44555444.655689***9998 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.2
                   HHHHHHHHHHH-HH CS
  Thioredoxin_7 31 tCqalerdflsdee 44
                   +C  l++++l++++
     CCE27183.1 85 ECFGLNEETLEAKV 98
                   57778888877744 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   1.9e-06    0.0038       8      49 ..      24      62 ..      20      82 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.9e-06
                   E--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHH CS
  Thioredoxin_8  8 fgaswcppckaftpklkelyeklkkkkkveivyvsldkkeee 49
                   f +++c+pc  ++pk ++l  ++k   +v++v + +d +++ 
     CCE27183.1 24 FTSNYCKPCSWINPKYNQLAARYK---NVVFVVIDVDANRDL 62
                   899********************8...999999999987654 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.5e-06    0.0089      48     109 ..      24      82 ..       5     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.5e-06
                    E--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT-- CS
  Thioredoxin_9  48 ltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqyltngaraiPtliildeege 109
                    +t ++C  ++++ P  +++a   +n+ + ++  d+n +l  +y+       Pt+++++++ +
     CCE27183.1  24 FTSNYCKPCSWINPKYNQLAARYKNVVFVVIDVDANRDLATRYKV---DGMPTFFMFKRTKK 82 
                    799*****************9999*******************77...55899999887644 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.2    0.0084        17       3      35 ..      22      54 ..      20      57 .. 0.87
   2 !   10.2   0.0   0.00024      0.49     152     175 ..      55      78 ..      52      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0084
                EEEEBTTBHHHHHHHHHHHHHHHHCCTEEEEEE CS
        DSBA  3 deffDvlCPyCylgkerleklaarspdvkvvlr 35
                  f + +C  C   ++++++laar+++v +v  
  CCE27183.1 22 AHFTSNYCKPCSWINPKYNQLAARYKNVVFVVI 54
                569999*******************99988865 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHTT-SSSSEEEETT CS
        DSBA 152 avrentaaaqslgvtGvPtvvvdg 175
                 +v+ n+++a +++v G Pt+++ +
  CCE27183.1  55 DVDANRDLATRYKVDGMPTFFMFK 78 
                 5899*****************933 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   8.2e-05      0.16      24      99 ..      15      88 ..       6     100 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.2e-05
                TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHHTT CS
    AhpC-TSA 24 kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvakayg 99
                +++p ++  ++++ c++C    p++++l+ ++k  +v  + + vd   +++   + ++++   +  +++k+ + +g
  CCE27183.1 15 RQSPRLIAHFTSNYCKPCSWINPKYNQLAARYK--NVVFVVIDVDANRDLATRYKVDGMPTFFMFKRTKKMDECFG 88
                6677788888888*******************9..89999999998887777666666666555555555555555 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.6   0.00057       1.1       4      39 ..      24      64 ..      21      75 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00057
                  EESTSSHHHHHH....HHHH.HHTTGGEEEEEGCCSHHHHH CS
  Glutaredoxin  4 ftkptCpyCkka....krlL.kelgvkfeeidvdkdeeire 39
                  ft+++C  C+ +     +l+ ++++v f +idvd++ ++  
    CCE27183.1 24 FTSNYCKPCSWInpkyNQLAaRYKNVVFVVIDVDANRDLAT 64
                  89999999976622214555577779*********986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 800.18
//
Query:       CCE27184.1  [L=1234]
Description: uncharacterized protein CPUR_00656 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-26   91.7   0.1    5.4e-26   90.7   0.1    1.6  1  DUF2439   Protein of unknown function (DUF2439)
  ------ inclusion threshold ------
      0.019   14.9   0.2      0.073   13.1   0.2    2.0  1  CCDC32    Coiled-coil domain containing 32


Domain annotation for each model (and alignments):
>> DUF2439  Protein of unknown function (DUF2439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.1     6e-30   5.4e-26       1      80 [.      26     106 ..      26     107 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 6e-30
     DUF2439   1 vkeyevlYTsqvtkKsKkWhDGflklhsfnkrvvLydeesklvessflknekeeleegeelelek..ylvqveeliseeerd 80 
                 v +y++l+T+++++K+K+W+DG+lk+hs+nk++++yd++++++++ +++ ++++leegeel+l++   +vqv +  +++e+d
  CCE27184.1  26 VLDYNCLFTHDLKRKQKRWQDGKLKYHSYNKKIMVYDDRGNFIGDAHWQ-ADGALEEGEELQLDRgsAIVQVADYVGSREQD 106
                 678**********************************************.7**************************99998 PP

>> CCDC32  Coiled-coil domain containing 32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   8.1e-06     0.073      82     138 ..     769     825 ..     761     835 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.1e-06
      CCDC32  82 tskdlLesLsqkkkecwdrlLad.eveselfeegldld.esalerlkRwLlPekvAisa 138
                  + d+ e L+q++++c ++lLa+  ves+ + + l+ d + +  + +  L P+ +A  +
  CCE27184.1 769 AASDVVEDLRQQREHCTEHLLAEvVVESQKLSDLLETDnDKG--KSQALLNPDDIAAAS 825
                 67899******************999************7666..777888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1181  (0.0658709); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.47
# Mc/sec: 7934.37
//
Query:       CCE27185.1  [L=319]
Description: uncharacterized protein CPUR_00657 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2341.90
//
Query:       CCE27186.1  [L=400]
Description: uncharacterized protein CPUR_00658 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-06   26.8   0.0    1.3e-05   25.6   0.0    1.6  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei
     0.0035   17.1   0.0     0.0086   15.9   0.0    1.7  1  HHH       Helix-hairpin-helix motif
  ------ inclusion threshold ------
        0.1   13.2   0.0       0.32   11.6   0.0    1.8  1  HHH_5     Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.1e-09   1.3e-05       1     102 [.     161     304 ..     161     309 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.1e-09
                 HHHHHHTTS-HHHHHHHHHHHHHHHS.HCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................ RF
     HhH-GPD   1 vsailsqqtsderanriierlferfg.fptpedladadeekLrelirelGfyrrKakyikelArilv................................ 66 
                 +++ilsq+ts ++ +r+  ++ +++g + +  ++a   ++ L+++i++ G+   K k i  +  ++                                 
  CCE27186.1 161 IRTILSQNTSNANSTRAKLSMDKEYGgCDKWAEIAHGGQARLQKAIQSGGLAAVKSKVIMGILDQIKdkygvysldhlfrasdqdalqemmsfpgvgpk 259
                 789***********************9999********************************************************************* PP

                 ..........S-SSS--TTSHHHHHHHHHHTTSSSS.TTHHHHHHHH CS
                 ..........xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
     HhH-GPD  67 ..........gkpdvlivvDvhvrrilkrlrsikek.ktkkkvekkl 102
                           ++  + ++vD+hv ri + l++      t+++++++l
  CCE27186.1 260 tascvllfclQR--PSFAVDTHVYRITGLLGWRPGGaTTREEAQAHL 304
                 ********9866..56***************9988845566665555 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06    0.0086      12      30 .]     249     267 ..     244     267 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-06
                 HHHTSTT-SHHHHHHHHHH CS
         HHH  12 eLlalPGVGpktAeaIlsy 30 
                 e ++ PGVGpktA ++l +
  CCE27186.1 249 EMMSFPGVGPKTASCVLLF 267
                 67777***********976 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.3e-05      0.32      21      49 ..     229     262 ..     214     267 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.3e-05
                 T.T--SHHHHHHS.-HHHHHTS...TTS-HHHHH CS
       HHH_5  21 a.Giesvedlaaa.dveeLaki...pGiGkktAe 49 
                 + G+ s++ l +a d+++L+++   pG+G+ktA 
  CCE27186.1 229 KyGVYSLDHLFRAsDQDALQEMmsfPGVGPKTAS 262
                 4467799988776467888887788*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3015.22
//
Query:       CCE27187.1  [L=669]
Description: probable lysophospholipase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-176  587.3   0.1   2.2e-176  587.1   0.1    1.0  1  PLA2_B    Lysophospholipase catalytic domain


Domain annotation for each model (and alignments):
>> PLA2_B  Lysophospholipase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  587.1   0.1  1.2e-180  2.2e-176       1     491 []     131     614 ..     131     614 .. 0.97

  Alignments for each domain:
  == domain 1  score: 587.1 bits;  conditional E-value: 1.2e-180
      PLA2_B   1 iaiavSGGGyramltgaGvlkAldsRtdnat...glgGlLqsatYlaGlsGgsWlvgslavNnftsvqelskkkeddsvweleksiln.peglelvkni 95 
                 i++avSGGGyraml+gaG+++A dsR++++    +lgGlLqsatY++GlsGgsWlvgsl+ Nnftsvqe ++   +  +w +++s+l+ p   +  + i
  CCE27187.1 131 IGLAVSGGGYRAMLNGAGAVAAWDSRSTGSDaagNLGGLLQSATYISGLSGGSWLVGSLFANNFTSVQEAVH---SPAIWRFSDSVLKgP---AQYSLI 223
                 89*************************88777789**********************************999...678********9955...667789 PP

      PLA2_B  96 krydeivdevekKkdagfnvsltDiwGralseklveaeeggvnltlsslkdaekfqeaemplPiivadgrkpgetvinlNatvfEfsPyelgswdakln 194
                 ++y++i d+v +K +agf++s+tD+wGr+ls++l++a++gg++ t+ss+++   f  +++plP++vad r+p+ ++i+ N+tvfEf+P+e+gs+d++l+
  CCE27187.1 224 QYYRSILDQVVDKDKAGFDTSITDYWGRMLSYQLINATHGGPGFTFSSIANDADFAAGKTPLPLVVADARAPNAKIISSNSTVFEFNPWEMGSFDPSLQ 322
                 9************************************************************************************************** PP

      PLA2_B 195 sFvpveylGtklsnGtvvk.kgkcvagfdnaGflmgtsstlFnevlleinsts......mlesllkellkkllkdlsedsedisqyapnpfkdaeeenq 286
                 +F+p++y+G+++s G++ + + kc+ gfdnaGf+ gtss+lFn+++l +++ +       +++++ e+l+ ll+ l + s+di+ ++pnpf +++    
  CCE27187.1 323 GFAPLQYVGSNFSAGVIADpDSKCIIGFDNAGFVLGTSSSLFNQIVLYLKDGNshavpdDVPKFIIEALTGLLTTLGQTSNDIADWTPNPFRGWN---- 417
                 ***************99863789***********************9988777677888899*********************************.... PP

      PLA2_B 287 natqsivesktLdlvdggedgqniplvpllqkerevdvifaldnsadteeswpdgvslvatyeRvleskqvkgkkfpyvpdqntfvnlgLnkrptffGc 385
                  + ++ ++++ L lvdgged qn+p +p lq+ r+vdv+f +d+sadte+ wpdg+s  atyeR l+++ ++g++fp vp ++tf nlg+n+rp+f Gc
  CCE27187.1 418 PQRNPAANDTRLTLVDGGEDLQNVPYHPHLQPARHVDVVFSIDSSADTETGWPDGASAIATYERSLQASVSNGTGFPSVPGKDTFQNLGFNSRPVFLGC 516
                 78899999******************************************************************************************* PP

      PLA2_B 386 DarnltdlsatvdestpPlvvylpnekysylsnlstfklsykdseregliengfeaatqdnetdddefaacvacaiirRklerknltlpsecekcFedy 484
                 D+rnl +         +Pl+vy+pn++y ylsn+stf++ +++  r+++i+ng+ +atq n+t d+++ +cv+ca+++R+++r+ +  p++c++cF++y
  CCE27187.1 517 DTRNLSSP--------APLIVYIPNYPYIYLSNISTFQMAIETPARDAIIQNGWAVATQLNSTRDSSWSVCVGCAMLSRSFDRTKTAVPDKCKECFANY 607
                 *****999........9********************************************************************************** PP

      PLA2_B 485 cwngtvd 491
                 cwngt++
  CCE27187.1 608 CWNGTLN 614
                 ****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 5031.37
//
Query:       CCE27188.1  [L=495]
Description: related to NAD kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-45  153.7   0.0    1.4e-44  152.4   0.0    1.5  1  NAD_kinase       ATP-NAD kinase
  ------ inclusion threshold ------
      0.058   13.3   0.0        0.1   12.5   0.0    1.3  1  Ceramidse_alk_C  Neutral/alkaline non-lysosomal ceramidase, C
        0.1   12.2   0.0       0.23   11.1   0.0    1.5  1  DAGK_cat         Diacylglycerol kinase catalytic domain


Domain annotation for each model (and alignments):
>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.4   0.0   2.4e-48   1.4e-44      71     280 ..     148     444 ..     129     447 .. 0.90

  Alignments for each domain:
  == domain 1  score: 152.4 bits;  conditional E-value: 2.4e-48
                 C-TTTTTSSSEEEEEE-HHHHHHHHHHHHH..CT-EEEEEESSS--SS-SEEGGGHHHHHHHHHHT-SEEEEEEEEE...................... CS
  NAD_kinase  71 leafadagvdliivvGGDGTaldvarllqk..aeiPvlgvnaGvkgfltefepeaaaellekllegeirvekrevld...................... 145
                  ++   +++d+i + GGDGT+l++a+l++    ++P+l++++G++gfl+e ++ + ++++++++  +  v+ + +                        
  CCE27188.1 148 GQCNLADKIDVIATFGGDGTVLRAASLFKLhgSVPPILSFSMGTLGFLGEWNFGEHKKAWREMYMSGSDVAVAHMAAvprnngrdkrrlmngagshdvg 246
                 56777899*******************9876689*******************************999999999999999******************* PP

                 .........................................................EEEEETTE.................EEEEEEESSEEEEEESS CS
  NAD_kinase 146 .........................................................avimrskgee..........diad.iviensvlnevviirgp 176
                                                                          +                   +++d  +    ++ne+ ++rg+
  CCE27188.1 247 gagadagadadvsswkgwerhrgkslgihraakillrhrlkadivdaqgrsirhevtD--------TlasqhstsiaATKDaSLPALRAINEISVHRGS 337
                 *****************************************99999888555555552........35555555455232204445568********** PP

                 SSS-EEEEEEETTEEEEEEEESEEEEE-TGGGGTHHHHTT--EE-TT---EEEEEESESSS----EEE-TT-EEEEEE-...SS--EEEEETTTEEEEE CS
  NAD_kinase 177 gstlielelyvdtelleadqldglivstPtGstayslsaGgplisPgvlailivpicPhslssrpiVvssssklrirva...srseallaldGseelel 272
                  ++l+ +++y ++++l++  +dg+++stPtGstayslsaGgp+i+P v+ +li+pi P sls+r +V++ + k+++r++   +++++ + +dG++   +
  CCE27188.1 338 HPHLAVIDIYQNGHFLTETTADGILISTPTGSTAYSLSAGGPIIHPLVKSLLITPISPCSLSFRSLVLPLDTKVTLRMSsknRGRDLDVNIDGKRCAGV 436
                 *****************************************************************************99988889999*********** PP

                 -TT-EEEE CS
  NAD_kinase 273 spgdevrv 280
                 spg e+rv
  CCE27188.1 437 SPGMEIRV 444
                 *****999 PP

>> Ceramidse_alk_C  Neutral/alkaline non-lysosomal ceramidase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.7e-05       0.1      45      80 ..     198     233 ..     194     277 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.7e-05
                      --TT-EEE---.SEETT-EEEEEEEE--GGG---TT CS
  Ceramidse_alk_C  45 ksFGdvltdveksyragdtvsvtFvganPrnnlrle 80 
                      ++FG+ ++  ++ y  g+ v v  ++a Prnn r +
       CCE27188.1 198 WNFGEHKKAWREMYMSGSDVAVAHMAAVPRNNGRDK 233
                      79*********99*******************8876 PP

>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.9e-05      0.23      54      92 ..     154     191 ..     144     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.9e-05
                 CC-SEEEEEESHHHHHHHHHHHCTHHCTTSEEEEEE-SS CS
    DAGK_cat  54 egvdlivvaGGDGtvsevlnglleelatkpplgiiPlGt 92 
                 +++d+i   GGDGtv  +++ +   +++ pp+  + +Gt
  CCE27188.1 154 DKIDVIATFGGDGTVLRAASLFKL-HGSVPPILSFSMGT 191
                 478**************9998888.89999999888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3875.65
//
Query:       CCE27189.1  [L=329]
Description: related to acetyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-27   94.2   0.0    6.4e-27   93.8   0.0    1.2  1  Acyltransferase  Acyltransferase
    1.6e-12   47.3   0.1    2.6e-12   46.7   0.1    1.4  1  Acyltransf_C     Acyltransferase C-terminus


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   7.1e-31   6.4e-27      14     134 ..      48     203 ..      22     204 .. 0.91

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 7.1e-31
  Acyltransferase  14 gpailvaNHqsylDvlllwlllyksn.gp.rnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleeg............k 93 
                      ++++++aNHq+y+D+++lw++ y++n g    ++ii+k++l++ip++g++m+ +gfif++R ++a+++  l++ +++l+++             
       CCE27189.1  48 ERMVMIANHQIYTDWIYLWWVGYANNpGMhGHIYIILKESLKYIPVIGTGMMFYGFIFLSR-KMATDQPRLAHRLNKLKQKkvdprgntyldpM 140
                      699***********************7447*******************************.99999999999999999999**********88 PP

  Acyltransferase  94 lvviFPEGtrsre...................gel.lpfkkGlvrlaakak...kgvpivPvai 134
                      ++++FPEGt++++                     + lp ++G  + + ++k   ++v++++va+
       CCE27189.1 141 WLLLFPEGTNLSNngrmksaawaaknslrdpeH-VmLPRSTGTYFCLNELKdsvEYVYDCTVAY 203
                      8***************************99633.36**************************98 PP

>> Acyltransf_C  Acyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.1   2.9e-16   2.6e-12       3      55 ..     223     284 ..     221     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 2.9e-16
  Acyltransf_C   3 LsG.kpsevhiyvrripleevPed.eeelaeWlhelfeeKDklleeFyktgtFe.......p 55 
                   ++G  p+ v++y rr+++ ++P d  +e + Wl++ + +KD+l+e++++tg+F+       +
    CCE27189.1 223 FEGrPPKSVNLYWRRFKVADIPLDdPKEFELWLRDQWYKKDALMEQYLNTGRFPplsgdkvD 284
                   7787899*****************78***************************977665331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2597.47
//
Query:       CCE27190.1  [L=505]
Description: related to putative tartrate transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-38  132.2  36.9      3e-37  128.4  37.0    1.9  2  MFS_1           Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.017   15.2   0.1      0.047   13.7   0.1    1.8  1  DUF1146         Protein of unknown function (DUF1146)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4  37.0   3.3e-41     3e-37       4     352 ..      70     437 ..      67     438 .. 0.87
   2 !    5.5   0.1   0.00076       6.9     118     187 ..     418     491 ..     411     503 .. 0.76

  Alignments for each domain:
  == domain 1  score: 128.4 bits;  conditional E-value: 3.3e-41
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslw.lllvlrvlqGlgag 100
                 ++++s ++r++ ++a    ++ +l +    ++++  +++++++++++p   ++  +G+r  +  ++ll+ al+ + + f+   w  l +lr+l G+ ++
  CCE27190.1  70 LYCISLMDRTNMSAASIAGMNVELKLIDNRYNIANLVFFVTYIIFQPPSTIVIRALGPRLhLAGITLLWGALM-IGFGFVKK-WeQLTALRALLGVLEA 166
                 678899999987777766******************************************8888888888888.55558566.55************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllll.............peepperk 180
                 ++fp++++l++ w+++ e g+ ++++++   ++a ++ +l+  ++++ g      Wr++f+i +++++ +++l+++ll             ++++  r+
  CCE27190.1 167 GFFPSCVYLLSTWYTRYEVGKRYAIFGVVGCVAAGFAGVLAYGVIQLNGkagltgWRWIFIIEGAITCACALLGYWLLvdfpdsarkswnfLRPDELRW 265
                 *********************************************99999****************************999777777777666666666 PP

       MFS_1 181 rkspkeeekgtgpaplvpawkallkdp...vlwillialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrr 275
                  ++ +e+  g+++ ++++ w+++++      +w++ ++++l ++++++l ++lp++l++ +++s g+ + +   a +++++  +++l g+l d++    
  CCE27190.1 266 VVNRVEKDRGDAQLEAFK-WSKFFRGGkdwKIWVFALIFFLSTCMTYSLAYTLPIILVSSMHFSvGAAQCL--AAPPYAFAGLVMFLMGWLGDKYHV-- 359
                 666666669999999999.*****999555556777888888889999****************8666666..7777777777789********776.. PP

       MFS_1 276 rlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfntagslggalg 352
                 r  l+++ ++l+++gl +++++ssa + +++++l+  g+   +p+++a+ ++++ ++ ++++ s+    +g++gg++g
  CCE27190.1 360 RGPLIVANMILCLIGLPIMGWASSAGVKYFGVFLVAAGANANVPTIMAFQANNIrGQWKRAFCSATLVGFGGIGGIVG 437
                 *************************************77778888888777777477788888888889999999998 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.00076
       MFS_1 118 ergraigllsagfslGailgpllggllasslgWravfyilaivsllafv....lfllllpeepperkrkspkee 187
                 +r++  + l ++ ++G i+g l+      + g+   f+++ + +ll ++    + +++++ ++++ + +   e+
  CCE27190.1 418 KRAFCSATLVGFGGIGGIVGSLIFREQDKLTGYKPGFWACIACALLNIIlactCSVMFMWKNKKADRGEVILED 491
                 68888888999999999999999998888888888888888888888776667777777777777776666665 PP

>> DUF1146  Protein of unknown function (DUF1146)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   5.2e-06     0.047      11      44 ..     279     314 ..     278     315 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.2e-06
     DUF1146  11 Lqslrlekffkkpkvgqakll..lillsialGylvS 44 
                 L +++++kff+ +k +++ ++  +++ls ++ y ++
  CCE27190.1 279 LEAFKWSKFFRGGKDWKIWVFalIFFLSTCMTYSLA 314
                 789***************98544899*******876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3782.75
//
Query:       CCE27191.1  [L=494]
Description: related to putative tartrate transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-36  126.5  31.5    1.1e-36  126.5  31.5    1.3  1  MFS_1          Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.18   11.0   0.0       0.28   10.3   0.0    1.2  1  NAD_binding_4  Male sterility protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5  31.5   1.3e-40   1.1e-36       4     352 ..      59     426 ..      56     427 .. 0.86

  Alignments for each domain:
  == domain 1  score: 126.5 bits;  conditional E-value: 1.3e-40
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlgaga 101
                 ++++s ++r++ ++a    ++++l +    ++ +  +++++++v+++p  +l+  +G+r  + l++ll+ +++ + + f+ ++  + +lr++ Gl +++
  CCE27191.1  59 MYCVSLMDRTNMSAANIAGMSKELKLIDNRYNVANLVFFVTYVVFQPPSTVLVRAIGPRVhLALITLLWGGVM-IGMGFVKNWQQITALRAVLGLLEAG 156
                 689999999998888777******************************************9999999999999.6666866666*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllll...peepperkrkspkeee... 188
                 +fp++++l++ w+++ e g+ ++++++   ++a++  +l+  l+++ g      Wr++f+i + +++ ++++ ++ll   p++ ++ +++  + e+   
  CCE27191.1 157 FFPSCVYLLSTWYTRYEVGKRYSVFYIVGCVAAACSGILAYGLMQLNGrenltgWRWIFIIEGSLTCGLAIVCYWLLvdfPDSTRKTWNFLCAHELqwi 255
                 ********************************************9999*********************997666666773333333443333333667 PP

       MFS_1 189 .......kgtgpaplvpawkallkdp...vlwillialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrr 276
                         g++++++++ ++++l++     +w++ ++++++++++++l ++lpl+l+  +g+s g+ + +  +a +++++  +++l g+l d++    r
  CCE27191.1 256 vnrverdRGDAKTEAFQ-LRKFLRSGldwKIWAYALMFFGTTAMTYALAYTLPLILVANMGFSvGAAQCL--VAPPYVFAGLFMFLMGWLGDKYHV--R 349
                 77766679999999999.99999999333335777777777888888****************9778888..999999999999*********766..* PP

       MFS_1 277 lllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfntagslggalg 352
                   ++l+ +ll+++gl +++++ssa + +++++l++ g+   +p+++++ ++++ ++ ++++ s+    +g++gg+ g
  CCE27191.1 350 GPIILGNMLLCLIGLPIMGWASSAGVRYFGVFLVTAGANSNVPTVMSFQANNVrGQWKRAFCSATLVGFGGIGGIYG 426
                 ************************************99999999999999988566677777777778888888876 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   3.1e-05      0.28      54     141 ..      17     104 ..       3     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.1e-05
                    HHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--..EEEE--SS-S.ST.TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTT CS
  NAD_binding_4  54 llkelaerikvveGDlseprlGLseedlqelaeevd..viihsaAtvnfde.pykellrvNveGtrevlelakklkklkvllhvSTayvng 141
                         +  +++v G  ++ ++G+s+e+ ++++++vd  +i+ ++A + +   +  ++ ++N+ G+ + l+l  ++ +   l+++ T +v +
     CCE27191.1  17 DE---KCEVTIVDGSDNDGNFGISPEQQRNIIRRVDrrLILTVGAMYCVSLmDRTNMSAANIAGMSKELKLIDNRYNVANLVFFVTYVVFQ 104
                    33...66788999999999****************9556******98776546677999************99998888999999955544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3558.33
//
Query:       CCE27192.1  [L=579]
Description: related to 5`-nucleotidase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-35  122.9   0.2    3.8e-35  121.4   0.1    1.8  2  5_nucleotid_C  5'-nucleotidase, C-terminal domain
    2.4e-13   51.1   0.4    5.8e-13   49.8   0.4    1.7  1  Metallophos    Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.017   14.4   0.7      0.028   13.8   0.1    1.6  2  YmdB           YmdB-like protein


Domain annotation for each model (and alignments):
>> 5_nucleotid_C  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   0.1   6.4e-39   3.8e-35       1     153 [.     339     504 ..     339     509 .. 0.91
   2 ?   -3.4   0.0       1.7     1e+04      81     107 ..     531     562 ..     526     564 .. 0.48

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 6.4e-39
                    EEEEESSB....---HHTS--HHHHHHHHHH.............TGSTT--EEEEEGGG----BTTTEEEHHHHHHHS-S--EEEEEEEEHHHHHH CS
  5_nucleotid_C   1 vigtttveldgrdlalrtgetnlgnliadal.............raaagadialangggiradlpaGditvkdlltvlpfgntlvvveltGaqlke 83 
                    vig+t++ ld++  ++++g++ lg++iada+              ++ ++d+a++n+gg+ra++++G+it+++++t++pfgn ++ ++ tG++l++
     CCE27192.1 339 VIGSTKNVLDQS--TCQKGDCLLGQVIADAMleyrqnqtlsakgPDNIEPDFAIINAGGVRATIDQGNITRGQVITAFPFGNAITQIKYTGSDLRK 432
                    699999988887..999**************88877666665555556669********************************************* PP

                    HHHH....HTTTTTS--TT-EEEE.SEEEEE-TTS-TT--EEEESSS-BEEE--TTSEEEEEEEHHHHTTGGG- CS
  5_nucleotid_C  84 aLen...esvsaskaasgrflqvs.GlrytydlskpagervtslsvtvngkpldddktYkvatnsylasggdgf 153
                    +Le    ++++ +++++++  qvs ++ ++ +++k++g+r++++  t+ g pldd+ +Y+v+t ++la+ggd+ 
     CCE27192.1 433 ILEGcvsRMNQFNQKKTSSWIQVSqNIVIQHNPAKEPGSRLVNV--TIGGRPLDDKTDYNVVTVDFLAGGGDNL 504
                    ****99977788889999999***88******************..77************************84 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.7
                    HHHHHHH.....HTTTTTS--TT-EEEE.SEE CS
  5_nucleotid_C  81 lkeaLen....esvsaskaasgrflqvs.Glr 107
                    l+ aLe+    +s  a+ ++ ++   vs Glr
     CCE27192.1 531 LQNALEErvvtTSAAAKGDDKSAAVAVSaGLR 562
                    45566665553222223333333335555666 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.4   9.7e-17   5.8e-13       2     203 ..      40     252 ..      39     253 .. 0.76

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 9.7e-17
                  EEEEEESBTB................TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEE...EEEC-TTSCHHH CS
  Metallophos   2 rilvigDlHl................algggqlddllkllddllreekpdlvllaGDlvdrgdlekellel.laalvkypipv...ylllGNHegfee 79 
                  ++ +++D+H                 + ++g+++++++ +d+l+ ++  +l l aGD ++++ + +++    +a+  +   ++   +++lGNHe ++ 
   CCE27192.1  40 SFFHVNDVHAhldqfapggtdctdasKGCVGGYARIKTKVDELRTQKPDNLWLNAGDEFQGTLFYTFYGGEkIAETMN---HLkfdAMTLGNHE-WDG 133
                  688****************************************999666888888**888885555555554444444...22235********.999 PP

                  HHHHHHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.....CEEETHHHHHHHHHHHSCHHHHCC.HHHHHHHHHHTTCSEEEEEESSES CS
  Metallophos  80 ellnkygylgifsepwrsdaevfnnlplaslgsgslkvlllhGg.....spellvsldklgslnleleapepg.dewlkdlekrekadwvivlgHspl 171
                  + + + ++l +   p  s++ +  n  l++ +++ ++++  h       + e + ++ ++g  + + +++ +    +++  ++ +k++ +++l+H++ 
   CCE27192.1 134 GDEKLGQFLRNLTFPVVSCNVKSTNKDLNETIKN-YHIFEKHDLavigaTTETTPNIANVGPGTTFSDPIPEIqRAIYEI-RNTTKVKRIVALTHIGY 229
                  9999*9************************9999.444444444433332222344444444444443333324444444.888***********999 PP

                  SCSSSCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 172 yrgsgylfgdealedllkkygvdlvisGHtHv 203
                  +       +d+ l+  ++  g+ l+++GH+H+
   CCE27192.1 230 E-------ADKKLA--EQTEGLSLIVGGHSHT 252
                  9.......666666..9999***********6 PP

>> YmdB  YmdB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   4.7e-06     0.028      46     177 ..     110     252 ..      71     266 .. 0.71
   2 ?   -3.4   0.0      0.84     5e+03      67     103 ..     444     479 ..     442     483 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.7e-06
        YmdB  46 kkeaeellkagvdviTlGnhvwd..kkeilelieeeerllrPaNypegap..Gkglvvvevk.gkkvaVinllGrvfmeekl.......dnpFeaadel 132
                 +k+ae++ ++  d++TlGnh wd   +++ +++++ +  +  +N++++ +   + ++ +++  ++++aVi    +++ + +        ++p   +++ 
  CCE27192.1 110 EKIAETMNHLKFDAMTLGNHEWDggDEKLGQFLRNLTFPVVSCNVKSTNKdlNETIKNYHIFeKHDLAVIGATTETTPNIANvgpgttfSDPIPEIQRA 208
                 78999*****************93335577999999999999999876663333333333323667888888777665433212222226777788888 PP

        YmdB 133 lekl.ekekadiiivDfhAeaTsEKialglyldgrvsavvGTHthv 177
                 + ++ +++k++ i+   h    ++K+ l+   +g +s++vG H+h 
  CCE27192.1 209 IYEIrNTTKVKRIVALTHIGYEADKK-LAEQTEG-LSLIVGGHSHT 252
                 88884346667777777887777776.4555555.78888888886 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.84
        YmdB  67 wdkkeilelieeeerllrPaNypegapGkglvvvevk 103
                 +++k++ ++i+ +++++  +N + + pG+ lv v++ 
  CCE27192.1 444 FNQKKTSSWIQVSQNIVIQHNPA-KEPGSRLVNVTIG 479
                 88999999999999999999976.5788888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4031.77
//
Query:       CCE27193.1  [L=371]
Description: uncharacterized protein CPUR_00665 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-24   86.8   0.0    3.4e-24   86.0   0.0    1.4  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    1.2e-10   41.4   0.0    2.2e-10   40.6   0.0    1.5  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
    0.00016   22.3   0.1    0.00046   20.8   0.0    1.8  2  NAD_binding_3   Homoserine dehydrogenase, NAD binding domain
     0.0011   19.4   0.0     0.0037   17.7   0.0    1.8  2  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
  ------ inclusion threshold ------
      0.068   13.2   0.7        4.5    7.3   0.1    2.4  2  SUKH-4          SUKH-4 immunity protein


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.0   9.4e-28   3.4e-24       1     118 [.       6     124 ..       6     126 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 9.4e-28
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH.HHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS- CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeav.aesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPla 96 
                   ++v+iiG+G  ++ ++ p+ +++++ ++  ++++++ +   +  ++ +++  ++++ lladp+ ++v++ tp++th++l+kaaleagkhvl EKPl+
    CCE27193.1   6 FNVGIIGYGLSAKIFHIPFIATTPQFKLHSIVQRSPREGNSApDDHPDIKHHTEVDTLLADPDLHVVVISTPPDTHFQLIKAALEAGKHVLAEKPLV 102
                   79*********988888***********************998999*************************************************** PP

                   SSHHHHHHHHHHHHHHTS-EEE CS
  GFO_IDH_MocA  97 ttveeakelvelaekkgklvsv 118
                    t +ea+ l++la++k++++ v
    CCE27193.1 103 PTSAEANTLMALAREKKRHLCV 124
                   *****************99877 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0     6e-14   2.2e-10       1      75 [.     138     212 ..     138     251 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 6e-14
                     HHHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSH..HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEES CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdvwtldtragaeakkrwkrrk..kksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqna 75 
                     ++l+ +g+lG+v+ ++  t+ +r++aea+ +wk       +g +l dlg+H iD++ +LfG p++v   l ++rq++
      CCE27193.1 138 RHLLSEGQLGRVLEFN--THMDRYRAEAPTNWKSTVgiPDGGSALFDLGTHLIDQVYLLFGMPQAVQGRLLSQRQAR 212
                     689************7..666666666666666556779999*********************99876555555554 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.3e-07   0.00046      22     115 ..      31     123 ..      22     125 .. 0.86
   2 ?   -3.3   0.0       3.8   1.4e+04      74      88 ..     356     370 ..     353     371 .] 0.77

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.3e-07
                    EEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG-HHHHHHHTSSSTTS--.EE CS
  NAD_binding_3  22 lelvavadrdsllskdrkallasealtldlddliahldpdvvVEcasseavaelvlkaLkagkdvvtankgaladealyeeLreaaeangakiy 115
                    ++l  +++r++++ + +  + ++ + ++++d l+a++d  vvV  ++++   +l+ +aL+agk+v+     +   +a  ++L+++a+++++++ 
     CCE27193.1  31 FKLHSIVQRSPREGNSAPDDHPDIKHHTEVDTLLADPDLHVVVISTPPDTHFQLIKAALEAGKHVLAEKPLVP-TSAEANTLMALAREKKRHLC 123
                    5666777777666677778999999***************************************986544444.599***********999976 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.8
                    TTHHHHHHTTEEEE- CS
  NAD_binding_3  74 elvlkaLkagkdvvt 88 
                    e v++  k+gkdv +
     CCE27193.1 356 EAVVESAKSGKDVAI 370
                    567788899999987 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     1e-06    0.0037       1      93 [.       7      95 ..       7      97 .. 0.85
   2 ?   -1.6   0.0         1   3.6e+03       4      58 ..     293     345 ..     290     369 .. 0.53

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1e-06
                    EEEEETTTSHHHHHH.HHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEE CS
  Semialdhyde_dh  1 kvaivGatGyvGqel.lrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagvkv 93
                    +v+i+G  G   + + +  +++ p+++l+ ++ +s  +G+   + ++ +++++++        +  ++ +v+ ++p +++ +l ++++eag +v
      CCE27193.1  7 NVGIIG-YGLSAKIFhIPFIATTPQFKLHSIVQRSPREGNSAPDDHPDIKHHTEVDTLL----ADPDLHVVVISTPPDTHFQLIKAALEAGKHV 95
                    699999.999999999999**************************99544444444433....335789**********************987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1
                     EETTTSHHHHHHHHHHHC...TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE CS
  Semialdhyde_dh   4 ivGatGyvGqellrlLee...hpevelvvllsssrsaGkklaeavkaleegkdlkved 58 
                     +vG   + Gq+ ++ L +    p+++  + ++     Gk++++ +     ++d++v++
      CCE27193.1 293 LVGNAEAAGQQQAKTLMRevaVPDLQPETYTAFYAAWGKAVESGN-----EEDVPVKP 345
                     566666666666555544344455555555555555555555553.....35555555 PP

>> SUKH-4  SUKH-4 immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.013        48      20      89 ..      48     124 ..      45     137 .. 0.87
   2 ?    7.3   0.1    0.0013       4.5      24      79 ..     297     354 ..     272     363 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.013
      SUKH-4  20 aeavaawllpeparrfLve.......vGlPdlqllae.eeeaavadlelvaaerseelpaeaggllvLGalesaslvl 89 
                 +++ +++ ++ ++ ++L++       ++ P+ ++ ++  ++a +a  +++a++   + +aea  l+ L++ ++++l++
  CCE27193.1  48 PDDHPDIKHHTEVDTLLADpdlhvvvISTPP-DTHFQlIKAALEAGKHVLAEKPLVPTSAEANTLMALAREKKRHLCV 124
                 7888999999999999988888888888888.7788888888888999999999**********************98 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0013
      SUKH-4  24 aawllpeparrfLvevGlPd..lqllaeeeeaavadlelvaaerseelpaeaggllvL 79 
                 a++   ++a+++ +ev +Pd  +++++++ +a+ + +e  ++e+ +  p +a+++l+L
  CCE27193.1 297 AEAAGQQQAKTLMREVAVPDlqPETYTAFYAAWGKAVESGNEEDVPVKPSQARDVLRL 354
                 4445568999999*******76555555999999999999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2866.80
//
Query:       CCE27194.1  [L=272]
Description: uncharacterized protein CPUR_00666 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-11   43.7  11.9    3.2e-11   43.2  11.9    1.3  1  CFEM      CFEM domain


Domain annotation for each model (and alignments):
>> CFEM  CFEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2  11.9   1.8e-15   3.2e-11       2      66 .]      20      87 ..      19      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 1.8e-15
                TTTS-GGGTCGGG---TTSS.S-TT-HHHHH...H-HHHHHHHHHHHHHH--THHHH.HHHHHHHHHHH CS
        CFEM  2 lsalPkCaqdClaeavkkssgCakddtaCiC...tnaklqseitdCvtaaCtaeeal.aavnaasslCa 66
                l+++P+Ca +C+++a++k+s C  +d+ C+C   + a++q+++t+Cv ++C+a++a  +++ a+++lC+
  CCE27194.1 20 LNDIPACAMPCMQTAASKTS-CPPADFGCLCskdNFAAMQAAATSCVIEKCGAKKAAgEVLPAVEKLCS 87
                689*************7777.**********6666677899***********888877**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2164.66
//
Query:       CCE27195.1  [L=329]
Description: uncharacterized protein CPUR_00667 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.8e-17   61.6   0.0    1.4e-15   57.3   0.0    2.0  1  Pkinase_Tyr  Protein tyrosine kinase
    6.8e-16   58.4   0.0    1.5e-15   57.3   0.0    1.6  1  Pkinase      Protein kinase domain
     0.0011   18.9   0.3       0.21   11.5   0.2    2.2  2  APH          Phosphotransferase enzyme family
      0.002   17.5   0.0     0.0095   15.3   0.0    2.0  2  Kinase-like  Kinase-like
  ------ inclusion threshold ------
      0.031   13.9   0.0      0.048   13.2   0.0    1.2  1  RIO1         RIO1 family
      0.035   13.4   0.0       0.42    9.9   0.0    2.3  3  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   4.6e-19   1.4e-15      54     243 ..      76     258 ..      45     265 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 4.6e-19
                  HHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT..........CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTE CS
  Pkinase_Tyr  54 imkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk..........ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkv 141
                  + +k  hp i+ ++g   ++ +    +ey+++ dL +fL+ k          e  k t +  l+++lq A++++++++  +vH dl++ N++l+++  
   CCE27195.1  76 LVSKGPHPGILTYHGEFEQGFR----LEYAPNADLYHFLQGKrfdggkdhqnEPFKPTPQIRLQWMLQAAEALDHIHKAGIVHGDLTTINMFLDKDLN 169
                  4455577777777777775544....8**********************9766667788899************************************ PP

                  EEE-STTTHEETTTSSEE.EETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHH CS
  Pkinase_Tyr 142 vkisDfGLardiekddey.vkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelm 238
                   ki+Df+ ++   +++    ++e++             +   +++ D++++G  ++Eift +++py+ l++ee++ek++++   ++ +     + +++
   CCE27195.1 170 LKIGDFAGSSID-SNEFLcAVTESHLH----------PTDPNSEQGDIFAYGSAMYEIFT-SKRPYAALSDEEIAEKFQSNLFPDTSH--LGPVGRII 253
                  ******876643.22222122222222..........3455899****************.9***************98876555444..67799999 PP

                  HHHT- CS
  Pkinase_Tyr 239 kkcwe 243
                  ++cw+
   CCE27195.1 254 RNCWQ 258
                  99998 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   5.1e-19   1.5e-15      43     208 ..      64     234 ..      49     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 5.1e-19
                 HHHHHHHHHHHHHS....CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH..........HHSS--HH.HHH.HHHHHHHHHHHHHHHTTEE-SS-S CS
     Pkinase  43 kkvlrEikilkklk....hpnivrlyevfeekdelylvleyveggeladlle..........rkgslsee.eak.kiakqilegleylHskgiiHrDlK 125
                  +++rEi++ ++l     hp i+++ + fe+     + ley+++ +l ++l+          ++  ++++ +++ +++ q +e+l+++H++gi+H Dl 
  CCE27195.1  64 PSIQREIEVYQRLVskgpHPGILTYHGEFEQG----FRLEYAPNADLYHFLQgkrfdggkdhQNEPFKPTpQIRlQWMLQAAEALDHIHKAGIVHGDLT 158
                 5799*******9977899*********99964....5579999999999999887777666544444443566669*********************** PP

                 GGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHH CS
     Pkinase 126 peNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvek 208
                 + N+++d++ +lKi+DF  ++  +++       +t+  l P    + + s++ D++++G  +ye++t k p+++ +++e +ek
  CCE27195.1 159 TINMFLDKDLNLKIGDFAGSSIDSNEF---LCAVTESHLHP----TDPNSEQGDIFAYGSAMYEIFTSKRPYAALSDEEIAEK 234
                 *****************7776655543...56778888888....57889***********************7777664444 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0031       9.3      19      61 ..      48      91 ..      43     125 .. 0.70
   2 !   11.5   0.2   7.1e-05      0.21     140     181 ..     128     165 ..      94     176 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0031
                TT--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTB CS
         APH 19 pagryvlrrnpparaaeeirrevallrlLakagv.pvPevlagd 61
                +a++ +++ +  ++++++i+re ++++ L   g+ p    ++g+
  CCE27195.1 48 EATQTIVKTPLWEWSPPSIQREIEVYQRLVSKGPhPGILTYHGE 91
                4579999*******************999999885555555543 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.1e-05
                 CTCC.HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC CS
         APH 140 elld.lleeleeqvlaalaallpgelptvllHgDlhpgNllvd 181
                  +++ +l+ + +  +a+ +++ +   +++++HgDl + N+ +d
  CCE27195.1 128 PTPQiRLQWMLQ--AAEALDHIH---KAGIVHGDLTTINMFLD 165
                 223344444444..444555666...8***************9 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.2e-06    0.0095     146     190 ..     133     177 ..     119     224 .. 0.80
   2 ?   -0.3   0.1      0.18   5.3e+02      85     120 ..     291     325 ..     262     327 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.2e-06
  Kinase-like 146 rlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggfta 190
                  rl+  lq+     ++++ g+vhg++t  n++ld++  l++g+f  
   CCE27195.1 133 RLQWMLQAAEALDHIHKAGIVHGDLTTINMFLDKDLNLKIGDFAG 177
                  66666888888899****************************975 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.18
  Kinase-like  85 lpfdlvkiqkkkpfiqlkskesiywvvnallllpaa 120
                  +++ +v+ q+++++ q+       +v+ a+l++++ 
   CCE27195.1 291 ICSMVVAAQQQPRLSQVMLCT-LSAVALAFLVYQRR 325
                  578899999999999998765.55599999999875 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.6e-05     0.048     121     150 ..     146     176 ..     121     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
                 HHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1 121 lykeaglvHaDLSeyNvlvded.kvviIDvs 150
                  +++ag+vH+DL   N+++d+d ++ i D++
  CCE27195.1 146 HIHKAGIVHGDLTTINMFLDKDlNLKIGDFA 176
                 46799*****************999888886 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.5   4.5e+03      43      72 ..      52      80 ..      46      80 .. 0.77
   2 ?    9.9   0.0   0.00014      0.42     120     154 ..     133     167 ..     119     179 .. 0.81
   3 ?    0.4   0.0      0.11   3.4e+02      52      74 ..     258     280 ..     247     287 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.5
         Kdo 43 klskdlyrfklgrtravrEfrllkrLeeag 72
                 ++k    ++++ + + rE+++ +rL ++g
  CCE27195.1 52 TIVKT-PLWEWSPPSIQREIEVYQRLVSKG 80
                56666.568899999999999999998765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00014
         Kdo 120 krallkavgrliaklhragvnHadlyaknillqqe 154
                 + + + + + +   +h+ag+ H+dl   n++l+++
  CCE27195.1 133 RLQWMLQAAEALDHIHKAGIVHGDLTTINMFLDKD 167
                 5555567889999*******************987 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.11
         Kdo  52 klgrtravrEfrllkrLeeagva 74 
                 + g++ + + ++ +k+L+++gva
  CCE27195.1 258 QGGYANVEAIVQDIKKLHQRGVA 280
                 45555555555666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2535.59
//
Query:       CCE27196.1  [L=1038]
Description: related to aminopeptidase Y [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-37  126.9   0.1    1.5e-36  126.0   0.1    1.4  1  Peptidase_M28  Peptidase family M28
    0.00094   18.9   0.0      0.002   17.9   0.0    1.5  1  Peptidase_M20  Peptidase family M20/M25/M40
  ------ inclusion threshold ------
      0.025   13.6   0.0      0.043   12.8   0.0    1.3  1  Peptidase_M42  M42 glutamyl aminopeptidase
        2.9    7.6   5.4        1.6    8.5   0.5    2.2  2  DUF443         Protein of unknown function (DUF443)


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.1   3.2e-40   1.5e-36      13     195 ..     187     361 ..     176     364 .. 0.91

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 3.2e-40
                    EEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHHHHHCCCTTEEEEEEECS-SSSS--EE CS
  Peptidase_M28  13 evlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafakakpelkkiaavlnlDmvgsggkell 108
                      +l+++H+Dsv++  g    GA+D+++++ +lL+l+  +++sg++pk+g+++lf++aEE gl+G++afa  +p  + +++++nl+ +g+gg+++l
     CCE27196.1 187 AGVLVNCHFDSVST--GY---GATDDGVSCTSLLQLLSHFTSSGRQPKNGIVLLFNNAEEDGLFGARAFA-YSPLVQFCHTFVNLEGAGAGGRAIL 276
                    479***********..**...*************************************************.99*********************** PP

                    EHHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STTHHHH.TTT--EEEECTSSS-TTTTSTTSSGGGB-HHHHHHHHHHHH CS
  Peptidase_M28 109 fesgdkssselekelkalakpvgraaaedpfdersgrgrsDhspfl.kagvpvldlaetgfpevyHtprDtldnidkdtlariaelvl 195
                    f  ++++  e  + + ++ +p+g+ +a ++f++r +r+ +D+++f+ + g  +ld+a+   + +yHt++D++++ + ++++++  ++l
     CCE27196.1 277 F--RTTDL-ETAQAYAESPHPFGSVVAANAFERRIIRSATDFTVFAdNFGQRGLDIAFYAPRARYHTEDDDARHTSVRSVWHMLSAAL 361
                    9..44444.4555556699***************************5557********************************987765 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.4e-07     0.002      32      83 ..     201     252 ..     191     362 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.4e-07
                    STTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20  32 GrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle 83 
                    G Ga+d+  ++ ++l++l ++  +g +pk  ivllf  +EE g  Ga+a++ 
     CCE27196.1 201 GYGATDDGVSCTSLLQLLSHFTSSGRQPKNGIVLLFNNAEEDGLFGARAFAY 252
                    89***************************************877***99987 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.6e-06     0.043     132     179 ..     204     253 ..     185     260 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.6e-06
                    THHHHHHHHHHHHHHHHHCTSS-S..SEEEEEEESTCTTTSHHHHHHHHH CS
  Peptidase_M42 132 alDdragvavllellkelkeeele..atvylvatvqEEvGlrGaktsaek 179
                    a Dd ++++ ll+ll ++ ++  +  + ++l++++ EE Gl Ga+++a++
     CCE27196.1 204 ATDDGVSCTSLLQLLSHFTSSGRQpkNGIVLLFNNAEEDGLFGARAFAYS 253
                    67***************998876667*******************99986 PP

>> DUF443  Protein of unknown function (DUF443)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.5   0.00037       1.6      97     188 ..     419     509 ..     409     525 .. 0.73
   2 ?    0.9   0.5     0.074   3.3e+02      62     126 ..     739     806 ..     709     814 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00037
      DUF443  97 iillivlllvlvlriyiskklkkklynevele.kkskekiilipkslknfllllfaylfflglvilalvalietqniiilivlllllfllfll 188
                 ++lliv+ ++l+l++ +  +  k  +  v +e   +   + l     k ++ + fa +f ++l+i ++++l + + +ii+ +   ++ +++++
  CCE27196.1 419 LTLLIVTPIALLLVVSLLVRQDKWYFFAVYAEsGLEGGHVALGG--WKGLIRFPFAMIFAGALTIGSVYLLAKLNPLIIYSSGYAVWAMMISI 509
                 45667777777777777666666555545433267777888877..9*************************999999987766666555443 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.074
      DUF443  62 ksigllalGsavllgnllrklidvfniqlsklvnlii.llivlll..vlvlriyiskklkkklyneve 126
                 +s  ++++G+++l  +ll +l+  ++  + ++ ++++ + i++l   +l + + +s+++k  +++ ++
  CCE27196.1 739 SSLLVPIMGVGILSIVLLLPLMPFLHRVSHHVPVFLLfVSIATLSynLLAFPFSVSNRFKFFFQQVID 806
                 56668889999999999999999998877777555441344444322788889999998876666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1038 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.25s 00:00:01.05 Elapsed: 00:00:00.41
# Mc/sec: 7548.86
//
Query:       CCE27197.1  [L=841]
Description: uncharacterized protein CPUR_00669 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-15   54.8   1.2    2.2e-13   50.2   1.2    2.5  1  Drf_GBD   Diaphanous GTPase-binding Domain


Domain annotation for each model (and alignments):
>> Drf_GBD  Diaphanous GTPase-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   1.2   1.2e-17   2.2e-13       4     146 ..     301     528 ..     298     551 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.2e-17
     Drf_GBD   4 pdeeeidklFeelleelnlpeekreallalpiekKwqlvvqdkkkkakke................................................. 53 
                 +d   i++  e ll+++n+pe++r ++++l+ + K +++ qd+   +                                                    
  CCE27197.1 301 VDASNINEQLEALLDRRNIPENQRYKMRNLSDTIKLEFIRQDHAEMQAALagrtgswasnerdigsganspvveneqpkrsrgrsftfsrskkdanspt 399
                 57889*************************************996665559************************************************ PP

     Drf_GBD  54 ................................eklsksksksneeespesyvkklkddslke....kqlesLrVaLrtqplsWvkrFieleGlvaLlnv 116
                                                    +   sk + ++ p++yv +l++ +  e      l++Lr  Lr++ + W+++Fi+ +G+  ++ +
  CCE27197.1 400 kkskgsetlgrhfrsrstdsvacehrpsssgqSVGAGFLSKIKIQQGPSDYVAYLRKVQKPElvevGKLHKLRLLLRNETVAWIEDFIQQGGMHEIVAL 498
                 *****************************9988889999*************9999887777777899******************************* PP

     Drf_GBD 117 LskinekkaeeeedlkkeyeiikClKalmN 146
                 L++i e + +ee++    +e + ClKal  
  CCE27197.1 499 LNRIMEVEWREEHEDALLHENLLCLKALAT 528
                 ********99999999999********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (841 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 5933.68
//
Query:       CCE27198.1  [L=583]
Description: uncharacterized protein CPUR_00670 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-34  118.2   0.0    4.6e-34  117.7   0.0    1.2  1  DUF21     Cyclin M transmembrane N-terminal domain
    2.2e-05   24.8   0.6      0.015   15.7   0.1    3.2  2  CBS       CBS domain


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.0   5.1e-38   4.6e-34       3     173 ..      58     225 ..      56     228 .. 0.91

  Alignments for each domain:
  == domain 1  score: 117.7 bits;  conditional E-value: 5.1e-38
       DUF21   3 ivlllllsaffsgaEtAlvslsrlrl...eelaekgk.kkakrllkllknp.erlLstlligntlvnillsalatalfvellaegalavviatvivtll 96 
                  ++l+ll + f+g+++Al+  +++ l   +  a++ + k+akr+l+ll++  +++L+tll++n +vn  l+++++ +++  +a        a+v  t+l
  CCE27198.1  58 SMVLVLLGGAFAGLTIALMGQDSIYLqvvSGDACEPQyKNAKRVLQLLNKGkHWVLVTLLLANVIVNESLPVVLDRTLGGGVA--------AVVGSTIL 148
                 57999*********************77633444433699******999998*************************999886........55666*** PP

       DUF21  97 ilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlilesesepavseeelkklveeseeegvie 173
                 i++fgEi+P+s++++y ++i  +++ p+ +lm+l++P++w+  kll++il++++++++++  lk+lv+++++ g+++
  CCE27198.1 149 IVIFGEIVPQSICVRYGLPIGGFMSKPVLMLMYLTSPVAWPTAKLLDWILGEDHGTVYKKSGLKTLVTLHKSLGELS 225
                 ***********************************************************************999885 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0019        17      21      55 ..     270     306 ..     247     308 .. 0.62
   2 !   15.7   0.1   1.7e-06     0.015       9      55 ..     321     370 ..     313     372 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0019
                 HHHHHHHHTSSEEEEEETTTB...EEEEEEHHHHHHHH CS
         CBS  21 alelmrekgvsrlPVVdedgk...lvGivtlrDllral 55 
                  ++ + ++g+sr+P+    g+   +vG++  + l+ + 
  CCE27198.1 270 TMDNILSSGYSRIPIY-RAGNptdFVGMLLVKTLITYD 306
                 333333899*******.4444444*******9999886 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.7e-06
                 CEEEETTSBHHHHHHHHHHHTSSEEEE.E.....ETTTBEEEEEEHHHHHHHH CS
         CBS   9 vvtvppdttleealelmrekgvsrlPV.V.....dedgklvGivtlrDllral 55 
                 +v  +p+t+  ++++ + ++g s++ V V      + g  +G+vtl+D+++ l
  CCE27198.1 321 IVETRPETSCLDIINFF-QEGKSHM-VlVsnhpgSDHG-ALGVVTLEDVIEEL 370
                 56779************.6665788.536899754444.***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4075.95
//
Query:       CCE27199.1  [L=568]
Description: related to SER3-3-phosphoglycerate dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-53  179.6   0.1    5.5e-53  179.0   0.1    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    1.1e-33  115.7   0.3    3.1e-33  114.3   0.1    1.9  3  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    6.5e-07   29.0   0.4    0.00012   21.8   0.0    3.1  3  ACT            ACT domain
      0.004   17.2   0.1     0.0083   16.2   0.1    1.5  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
  ------ inclusion threshold ------
      0.023   14.0   2.7      0.063   12.6   2.7    1.8  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.044   14.3   0.0      0.085   13.4   0.0    1.5  1  XdhC_C         XdhC Rossmann domain


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.0   0.1   1.8e-56   5.5e-53       1     178 []     115     294 ..     115     294 .. 0.96

  Alignments for each domain:
  == domain 1  score: 179.0 bits;  conditional E-value: 1.8e-56
                   HHHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEEE CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv.sleellaesDivs 96 
                   ++llla++r++ +ad+ +++g+w ++++l g e+ +kt+Gi+GlG++G +va+++k++gm+v a d++ +++  +++ gvelv +l++ll + D+++
    CCE27199.1 115 IGLLLATARNIGRADRTIKDGKW-QRDRLVGVEVGRKTLGIVGLGKVGINVARMAKGLGMQVKALDPFASADM-ARQAGVELVsDLKTLLPHVDFLT 209
                   589********************.99******************************************99877.99999988889************ PP

                   E-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCH...HHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  97 lhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpeds...pllelpnviltPHia 178
                   +h+pl + t +li++eel++mk++a ++N+aRGg+ +e+aLl+aL++g+iaga+lDvf  epl + s    l+++pn++ tPH++
    CCE27199.1 210 IHTPLLATTMDLIGEEELQMMKETARVLNVARGGVYNEAALLKALDEGWIAGAGLDVFTAEPLIPGSvadWLAKHPNTVATPHLG 294
                   ***************************************************************98853337799*********97 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.1   1.1e-36   3.1e-33       2     134 .]      15     326 ..      14     326 .. 0.99
   2 ?   -2.7   0.0       1.4   4.3e+03      80      91 ..     412     423 ..     410     429 .. 0.81
   3 ?   -4.0   0.0       3.6   1.1e+04      38      59 ..     532     554 ..     512     559 .. 0.69

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 1.1e-36
                 EEEST.CHHHHHHHHHTTEEEEEESCSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   2 lileplreeelellkeegvevevkdellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAE 100
                 l+ e++++++l+ll   +++v+vk  l+ +el + ++++++li+rs+tkvt e+l+a  kLk +aragvGvDn++++aa+ +Gi+V n pg +t ++AE
  CCE27199.1  15 LVPETVSADGLALLAS-HHDVDVKLGLSADELMSIIPEYEGLIIRSETKVTPEILQAGRKLKAVARAGVGVDNINVPAATSQGIIVINSPGGNTLAAAE 112
                 6667889999999*99.55******************************************************************************** PP

                 HH................................................................................................. CS
                 xx................................................................................................. RF
  2-Hacid_dh 101 lt................................................................................................. 102
                 +t                                                                                                 
  CCE27199.1 113 HTiglllatarnigradrtikdgkwqrdrlvgvevgrktlgivglgkvginvarmakglgmqvkaldpfasadmarqagvelvsdlktllphvdfltih 211
                 *************************************************************************************************** PP

                 ...................................................................................T-BHHHHHHHHHHHHH CS
                 ...................................................................................xxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ...................................................................................aaTeeaqeniaeeaae 118
                                                                                                    a+T eaqen+   +++
  CCE27199.1 212 tpllattmdligeeelqmmketarvlnvarggvyneaallkaldegwiagagldvftaeplipgsvadwlakhpntvatphlgASTVEAQENVSIDVCT 310
                 *************************************************************************************************** PP

                 HHHHHHTTCCGTTBCS CS
                 xxxxxxxxxxxxxxxx RF
  2-Hacid_dh 119 nlvaflkgespanavn 134
                 +++++l+g+ p++avn
  CCE27199.1 311 QMLEILRGGLPTSAVN 326
                 **************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.4
                 HHHTT-EEEE-T CS
                 xxxxxxxxxxxx RF
  2-Hacid_dh  80 akerGilVtnvp 91 
                 ake+Gi+++++ 
  CCE27199.1 412 AKEKGIVISETH 423
                 99*****99886 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 3.6
                 TTESEEEE-TTS.-BSHHHHHHH CS
                 xxxxxxxxxxxx.xxxxxxxxxx RF
  2-Hacid_dh  38 kdadalivrsnt.kvtaevleal 59 
                 kd +al++   + +v+a++++ l
  CCE27199.1 532 KDNEALMILGVDgEVSAQIMDGL 554
                 66777777777768888888776 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.9   5.7e+03      21      31 ..     157     167 ..     157     168 .. 0.83
   2 ?    4.0   0.1     0.014        43      17      44 ..     394     418 ..     390     431 .. 0.79
   3 !   21.8   0.0   3.9e-08   0.00012       2      58 ..     482     537 ..     481     538 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
                 HHHTTSEEEEE CS
         ACT  21 ladrgiNidsi 31 
                 l++ giN++++
  CCE27199.1 157 LGKVGINVARM 167
                 6789****986 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.014
                 HHHHHHHTTSEEEEEEEEEESTTECEEE CS
         ACT  17 vfgaladrgiNidsieqrssedkvagiv 44 
                 +++ ++d ++Ni++++    e +   iv
  CCE27199.1 394 LAAFFSDSHVNIVNATLIAKEKG---IV 418
                 6889***********99888873...44 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 3.9e-08
                 EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHH CS
         ACT   2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleev 58 
                  ++v+  D+PG ++ v+++l+ +giNi+ ++++s + + a+ + ++ +  ++d e++
  CCE27199.1 482 LIIVHNYDEPGKIGGVGTVLGSHGINIRYMQVASLDAE-ARQSPSTPLLQQKDNEAL 537
                 6899*****************************99988.888888888888877765 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   2.8e-06    0.0083      19     111 ..     145     241 ..     129     259 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.8e-06
                    S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHH.HHHCTT-E.E--HHHCTTT-SEEEE-S....SSSSSB-HHHHCCS-TTEEEEE CS
  AdoHcyase_NAD  19 vllaGkvavvaGyGdvGkGcaaslkglGarvivtevdPical.qaameGfe.vvtleevvkkadivvttt....Gnkdiitlehlkkmkddaivcn 108
                    v ++ k+  ++G G vG   a+  kglG +v    +dP ++   a   G e v  l++++ ++d++   t     + d+i  e+l+ mk++a v n
     CCE27199.1 145 VEVGRKTLGIVGLGKVGINVARMAKGLGMQV--KALDPFASAdMARQAGVElVSDLKTLLPHVDFLTIHTpllaTTMDLIGEEELQMMKETARVLN 238
                    667889999*******************886..579**97551566778884568*********9877663333679*****************99 PP

                    -SS CS
  AdoHcyase_NAD 109 iGh 111
                    +  
     CCE27199.1 239 VAR 241
                    965 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.7   2.1e-05     0.063      26      59 ..     147     180 ..     140     246 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
                  B---EEEEESTSHHHHHHHHHHHHTT-EEEEEES CS
  AlaDh_PNT_C  26 vepakvlviGgGvaGlqAiatakglgakVtvlDv 59 
                  v + +  ++G G +G++ +++akglg +V++lD 
   CCE27199.1 147 VGRKTLGIVGLGKVGINVARMAKGLGMQVKALDP 180
                  55666779************************95 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.8e-05     0.085       2      45 ..     153     212 ..     152     263 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.8e-05
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG.......-GGG-TT-SE.................- CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa.......tkerfpeade.................t 45 
                  i+G g+v+  +ar+a+ lg++v  +dp +++        +                          t
  CCE27199.1 153 GIVGLGKVGINVARMAKGLGMQVKALDPFASADmarqagvE--------LvsdlktllphvdfltihT 212
                 69**************************9863333333330........1333444444444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4180.68
//
Query:       CCE27200.1  [L=320]
Description: probable GLO1-glyoxalase I [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-43  145.9   0.1    7.3e-21   74.7   0.0    2.1  2  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    3.2e-17   62.8   0.0    7.9e-07   29.3   0.0    4.0  3  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
    8.7e-10   39.4   0.0    9.4e-05   23.2   0.0    2.7  2  Glyoxalase_6  Glyoxalase-like domain
    4.9e-07   30.0   0.0      0.046   13.8   0.0    3.5  2  Glyoxalase_3  Glyoxalase-like domain
    3.1e-05   23.9   0.9       0.48   10.4   0.0    4.6  5  Glyoxalase_2  Glyoxalase-like domain
  ------ inclusion threshold ------
       0.14   12.2   0.1        1.2    9.2   0.0    2.2  2  CppA_N        CppA N-terminal


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   9.2e-23   2.8e-19       1     128 []      11     149 ..      11     149 .. 0.94
   2 !   74.7   0.0   2.5e-24   7.3e-21       1     128 []     170     308 ..     170     308 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 9.2e-23
                 EEEEEEEEESHHHHHHHHHHHHHTSEEEEEEEE............EESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC....TSEEEEEEEEE CS
  Glyoxalase   1 gidhvallvgdleksldFYtkvLGfklvkktdn............teeteglriaffhaggghielvlneapsgaakhvkkiee....tvhhvafiald 83 
                 +++h++++v+d+++s++FY+  LG+ lv k  +            + ++ + ++    + +g+iel++n  +++++++  +  +     ++++++++ +
  CCE27200.1  11 KLNHTMIRVKDPKASVKFYEF-LGMSLVAKRAFpdnkfdlyflgyNSPKAISHGNSQANREGVIELTHNYGTENDPSFTVN--TgnkePHRGFGHTCIS 106
                 689****************98.**********************99999999999999********************944..24577899******** PP

                 HCHHHHHHHHHHHTTGEEEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase  84 vedvgkaldrlkeagvkvvaepgrhyfgalysfyfrDpdGillei 128
                 v+++ +a++rl++ag+k+ +++++  ++++ +  + DpdG+++ei
  CCE27200.1 107 VDNIQAACQRLEDAGYKFQKKLTDGRMNNIAF--ALDPDGYWVEI 149
                 *******************************6..9*********7 PP

  == domain 2  score: 74.7 bits;  conditional E-value: 2.5e-24
                 EEEEEEEEESHHHHHHHHHHHHHTSEEEEEEEE............EESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC.TSEEEEEEEEEHCH CS
  Glyoxalase   1 gidhvallvgdleksldFYtkvLGfklvkktdn............teeteglriaffhaggghielvlneapsgaakhvkkiee.tvhhvafialdved 86 
                 +++h++l+v+d+eksl+FY++v+G++l++ ++n             +e++ ++       +g +el++n  +++++++ ++  + + +++++i+ +v+d
  CCE27200.1 170 KMNHTMLRVKDAEKSLKFYQEVMGMTLFRTSENqsagfnlyflgyPGEQGPPNDEKTAHREGLLELTWNYGTEKDENFKYHNGNdEPQGFGHICVSVDD 268
                 589*****************************************988899999999***********************66443699************ PP

                 HHHHHHHHHHTTGEEEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase  87 vgkaldrlkeagvkvvaepgrhyfgalysfyfrDpdGillei 128
                 v++a++r+++ gv+  + +++  ++++ +    DpdG+ +e+
  CCE27200.1 269 VEAACQRFDDLGVSWRKRLTDGRMKNIAF--MLDPDGYSIEV 308
                 ****************************6..9*******996 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.6e-10   7.9e-07       2     102 ..      14     132 ..      13     140 .. 0.71
   2 !   26.0   0.0   2.8e-09   8.3e-06       2      92 ..     173     282 ..     172     297 .. 0.81
   3 !   18.3   0.0     7e-07    0.0021       2      59 ..     261     315 ..     260     318 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.6e-10
                   EEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETT............EEEEEEEESSTT...-THHH.....TS-EEEEEEEEES- CS
  Glyoxalase_4   2 QigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgs............vqieLieplegp...eflae.....hgeglhhlaywvdd 78 
                   ++ i V+D +a v++++  lG+    +  +++ ++dl+f+ ++s +              ieL ++  ++   +f  +      + g+ h ++ vd+
    CCE27200.1  14 HTMIRVKDPKASVKFYE-FLGMSLVAKRAFPDNKFDLYFLGYNSPKaishgnsqanreGVIELTHNYGTEndpSFTVNtgnkePHRGFGHTCISVDN 109
                   89999************.7***999888888887776444444432222222222333478888866644454555447777899************ PP

                   HHHHHHHHCTTTEEEEEEEE-GGG CS
  Glyoxalase_4  79 ldaavarleeqGfevvqkgvraga 102
                   ++aa++rle++G++  qk+  +g+
    CCE27200.1 110 IQAACQRLEDAGYK-FQKKLTDGR 132
                   **************.566667775 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 2.8e-09
                   EEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETTEEEEEEEESSTT-THHH........................TS-EEEEEEE CS
  Glyoxalase_4   2 QigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgsvqieLieplegpeflae........................hgeglhhlay 74 
                   ++ + V+D e+ ++++++++G++ +++ ++++++++l+f+ + ++        p ++++ ++e                           g+ h+++
    CCE27200.1 173 HTMLRVKDAEKSLKFYQEVMGMTLFRTSENQSAGFNLYFLGYPGE-----QGPPNDEKTAHREglleltwnygtekdenfkyhngndEPQGFGHICV 264
                   78889********************************99999995.....444555554444455555555666666777788889999******** PP

                   EES-HHHHHHHHCTTTEE CS
  Glyoxalase_4  75 wvddldaavarleeqGfe 92 
                    vdd++aa++r+++ G++
    CCE27200.1 265 SVDDVEAACQRFDDLGVS 282
                   ***************987 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 7e-07
                   EEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTT.EEEEEEEETTEEEEEEEESSTT CS
  Glyoxalase_4   2 QigivVeDleaavarfsallGvgpwqryrdepqevd.lafallgsgsvqieLieplegp 59 
                   +i++ V+D+eaa +rf++ lGv +++r +d   +++ +af+l  +g   ie+i +++++
    CCE27200.1 261 HICVSVDDVEAACQRFDD-LGVSWRKRLTDG--RMKnIAFMLDPDG-YSIEVIPNDKYS 315
                   9****************8.**9877777654..4442899999999.899999888876 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.2e-05     0.097       3     101 ..      16     144 ..      14     150 .. 0.71
   2 !   23.2   0.0   3.1e-08   9.4e-05       3     106 ..     175     308 ..     173     309 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.2e-05
  Glyoxalase_6   3 vldaadpaalaaFwaaalgweveree..............................aaledpegvgpaaedaatllfqrvpe.............pa 56 
                   ++ ++dp+a ++F++  lg+++++++                                                l  +   e             p+
    CCE27200.1  16 MIRVKDPKASVKFYE-FLGMSLVAKRafpdnkfdlyflgynspkaishgnsqanreG--------------VIELTHNYGTEndpsftvntgnkePH 97 
                   677889999999995.66777766666888999999988888765555444333331..............22222222222444465555555666 PP

  Glyoxalase_6  57 knrvHldlavedldaevarlvalGArvlreprdgthgr..vlaDPeG 101
                   +   H+ ++v++++a+++rl+++G + +++  dg+  +     DP+G
    CCE27200.1  98 RGFGHTCISVDNIQAACQRLEDAGYKFQKKLTDGRMNNiaFALDPDG 144
                   7779*****************************99888999999999 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 3.1e-08
  Glyoxalase_6   3 vldaadpaalaaFwaaalgweveree....................aaledpegvgpaaedaatllfqrvpe............paknrvHldlave 67 
                   +l ++d+++  +F+++++g+++ r++                          +  +++ e+   l  +   e            + +   H+ ++v+
    CCE27200.1 175 MLRVKDAEKSLKFYQEVMGMTLFRTSenqsagfnlyflgypgeqgpP----NDEKTAHREGLLELTWNYGTEkdenfkyhngndEPQGFGHICVSVD 267
                   68899******************999889999999988887754441....233333333333333333333557799966554223359******* PP

  Glyoxalase_6  68 dldaevarlvalGArvlreprdgthgr..vlaDPeGneFcv 106
                   d++a+++r  +lG +  ++  dg+ ++   + DP+G    v
    CCE27200.1 268 DVEAACQRFDDLGVSWRKRLTDGRMKNiaFMLDPDGYSIEV 308
                   ***********************9999*********87766 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00017       0.5       2     113 ..      13     133 ..      12     143 .. 0.56
   2 !   13.8   0.0   1.5e-05     0.046      67     112 ..     247     290 ..     171     302 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
  Glyoxalase_3   2 DHvvlavpdleeaaarfarrlGftvt.............pggehpglgtaNalvmf.gdgYlEllavdpeapaperprlfgldrlakgeglhtlalr 84 
                    H+++ v+d+++ ++ + + lG++++               g  ++  +++   +  ++g +El      +  p++    g    +   g+ + +++
    CCE27200.1  13 NHTMIRVKDPKASVKFY-EFLGMSLVakrafpdnkfdlyFLGYNSPKAISHGNSQAnREGVIELTHNYGTENDPSFTVNTG--NKEPHRGFGHTCIS 106
                   57777777777766654.677777774444444444444222222223333333331344666666333333344443333..3345789******* PP

  Glyoxalase_3  85 tddidataarlraaGvdeagrrvrpdggd 113
                   +d+i+a+ +rl++aG++   + + +dg+ 
    CCE27200.1 107 VDNIQAACQRLEDAGYK--FQKKLTDGRM 133
                   ***************86..4444444433 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.5e-05
  Glyoxalase_3  67 fgld.rlakgeglhtlalrtddidataarlraaGvdeagrrvrpdgg 112
                   f+ +   ++++g+ ++++++dd++a+ +r+++ Gv+    r+r+ +g
    CCE27200.1 247 FKYHnGNDEPQGFGHICVSVDDVEAACQRFDDLGVS---WRKRLTDG 290
                   3333322369************************86...33333332 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.32   9.4e+02       3      19 ..      14      30 ..      12      39 .. 0.85
   2 ?   -1.0   0.0      0.55   1.6e+03      55      81 ..      39      65 ..      23      81 .. 0.64
   3 ?    3.3   0.0     0.026        77      68     113 ..     106     149 ..      89     152 .. 0.82
   4 !   10.4   0.0   0.00016      0.48       1      24 [.     171     194 ..     171     201 .. 0.88
   5 ?    3.9   0.0     0.016        48      68     113 ..     265     308 ..     237     311 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.32
                  ----EES-HHHHHHHHH CS
  Glyoxalase_2  3 lillvvkdieeskkFYe 19
                   +++ vkd + s kFYe
    CCE27200.1 14 HTMIRVKDPKASVKFYE 30
                  678999**********8 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.55
                  ---S--SS-EEEEEES-HHHHHHHH.. CS
  Glyoxalase_2 55 siaeqsnnfeLyFevedvdaflqklke 81
                  + a+  n+f+LyF   +  +++++ ++
    CCE27200.1 39 KRAFPDNKFDLYFLGYNSPKAISHGNS 65
                  445567899999987776666554444 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.026
                   EES-HHHHHHHH..GGGS-EEEEEEE-TTS-EEEEEE-TT--EEEE CS
  Glyoxalase_2  68 evedvdaflqklkeaeniellhelkekpWgqrvirfyDpDkhiiEi 113
                    v++++a+ q+l++a+  ++ ++l+       ++   DpD+  +Ei
    CCE27200.1 106 SVDNIQAACQRLEDAG-YKFQKKLTDGRM-NNIAFALDPDGYWVEI 149
                   6899********8888.777777766554.5688888*******98 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00016
                   ------EES-HHHHHHHHHHTT-- CS
  Glyoxalase_2   1 fklillvvkdieeskkFYedvlel 24 
                   ++ ++l vkd e+s kFY++v+ +
    CCE27200.1 171 MNHTMLRVKDAEKSLKFYQEVMGM 194
                   5678999**************986 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.016
                   EES-HHHHHHHH..GGGS-EEEEEEE-TTS-EEEEEE-TT--EEEE CS
  Glyoxalase_2  68 evedvdaflqklkeaeniellhelkekpWgqrvirfyDpDkhiiEi 113
                    v+dv+a+ q++ + + + + ++l+     + ++ + DpD+  iE+
    CCE27200.1 265 SVDDVEAACQRFDDLG-VSWRKRLTDGRM-KNIAFMLDPDGYSIEV 308
                   6899999999998887.888777776665.5799999********8 PP

>> CppA_N  CppA N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.29   8.8e+02       3      28 ..      14      38 ..      11      42 .. 0.81
   2 ?    9.2   0.0    0.0004       1.2       3      28 ..     173     198 ..     171     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.29
      CppA_N  3 tpvlrvnnrdlniafyqetlGlklls 28
                + ++rv + +  ++fy e lG+ l++
  CCE27200.1 14 HTMIRVKDPKASVKFY-EFLGMSLVA 38
                5678999999999999.689998886 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0004
      CppA_N   3 tpvlrvnnrdlniafyqetlGlklls 28 
                 + +lrv + ++  +fyqe +G+ l  
  CCE27200.1 173 HTMLRVKDAEKSLKFYQEVMGMTLFR 198
                 678*******************9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2614.89
//
Query:       CCE27201.1  [L=598]
Description: uncharacterized protein CPUR_00673 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 4306.59
//
Query:       CCE27202.1  [L=291]
Description: uncharacterized protein CPUR_00674 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        1.9    8.3  13.7        3.4    7.5  13.8    1.3  1  SPX           SPX domain


Domain annotation for each model (and alignments):
>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  13.8   0.00019       3.4      62     160 ..      80     239 ..      52     272 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00019
         SPX  62 e......rtepstsaaadesgnsaadasssepkdeae.......................................................slprrsp 99 
                 +      +++p++ a++d++ + ++d++  ++ +e +                                                       ++++ ++
  CCE27202.1  80 SgnsdlsSNPPTPGADDDDDDSGNEDDDTPKSHEESAskktnarkkaaplippaiitvqlsdgtvvirrlkcglllicvgpsvqdpqhdaksDQKDAKS 178
                 23444443333333333333333333333222222225566666677899999*******************************999999999999999 PP

         SPX 100 lsrssrssssygglvssppsansssssddssesnpadssssssssesesssssspsllrrl 160
                  +++++s+++  ++ +++++  +++++ d+s++n +d+++ s+s++s  s  s++s++ r 
  CCE27202.1 179 IQQDTQSDRQDARSIQQDKNVVAQDEQLDKSDENASDDPTGSPSAASAISVGSAESQTTRK 239
                 9999999999999999999999999999999999555555444444444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1193  (0.0665402); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2139.53
//
Query:       CCE27203.1  [L=595]
Description: uncharacterized protein CPUR_00675 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.4e-101  337.0   5.7     1e-100  336.7   5.7    1.1  1  KCH            Fungal potassium channel
  ------ inclusion threshold ------
       0.24   11.5   0.0       0.45   10.6   0.0    1.3  1  Fe_dep_repr_C  Iron dependent repressor, metal binding and di


Domain annotation for each model (and alignments):
>> KCH  Fungal potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.7   5.7  1.1e-104    1e-100       1     251 []      18     273 ..      18     273 .. 0.99

  Alignments for each domain:
  == domain 1  score: 336.7 bits;  conditional E-value: 1.1e-104
         KCH   1 kfdfidledFksksfltvlkYillwvllllslavyvsDiytavkLLafnkwsneikpaipfkiskwiFsgcIilsfvllayeaikairiirsrniaeay 99 
                 k+d+i+l+dFk k ++  ++Y +lw++l+ s+avy++D +tav+LLafn+ws+ i+paipf+iskwiFs+cI+lsfv+la+e i+air++r++n+ae++
  CCE27203.1  18 KWDYINLQDFKAKGCGPGFAYGYLWFMLITSIAVYAVDSFTAVNLLAFNRWSSAIQPAIPFDISKWIFSVCILLSFVNLAFEGIRAIRVMRRNNVAECF 116
                 8************************************************************************************************** PP

         KCH 100 lnnlarrlyslr.....sYkrFcvfeeitkskkkadkvalfvyfelkswlrllladgPRqviNaltLysvlkaklkekgekkleslsglfekikalaee 193
                 l++la+r++s+r     +++rF+vf+e+tkskk++++valf+yf+++sw+r+++++gP qv+NaltL sv++akl +++++    + g+f kikala+e
  CCE27203.1 117 LDSLAVRWESIRlgqgqGWRRFLVFAELTKSKKGSEYVALFTYFSFQSWIRVIFCSGPLQVVNALTLRSVYQAKLAPTATSIDGAILGFFGKIKALASE 215
                 ****************************************************************************99877789*************** PP

         KCH 194 nleeavilsfmlftvviwvlsilklivavilyipllvkiikkedgsLkeYccrkvdkr 251
                 ++++avils+m++t+v+wv+s+l l++av++y+++l+++i+++dg+L+ Yc+rkv+k+
  CCE27203.1 216 DYRQAVILSGMCYTFVVWVFSALFLLMAVLCYVFFLFHWIPQADGGLTGYCERKVNKK 273
                 ********************************************************95 PP

>> Fe_dep_repr_C  Iron dependent repressor, metal binding and dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     5e-05      0.45       8      33 ..     103     127 ..     101     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5e-05
                    HHHHHHHHHHHHHHHHHHCT--CCCH CS
  Fe_dep_repr_C   8 AkrlvrrhrllerfLvdvlgvdweea 33 
                    A r++rr +++e+fL d l v we +
     CCE27203.1 103 AIRVMRRNNVAECFL-DSLAVRWESI 127
                    889************.99*****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4279.40
//
Query:       CCE27204.1  [L=378]
Description: uncharacterized protein CPUR_00676 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-77  258.2   0.3    8.7e-77  257.8   0.3    1.2  1  DUF2461         Conserved hypothetical protein (DUF2461)
  ------ inclusion threshold ------
      0.023   14.1   9.9      0.037   13.4   9.9    1.3  1  BUD22           BUD22
       0.96    9.1  21.2        2.6    7.7  18.0    2.1  2  Cwf_Cwc_15      Cwf15/Cwc15 cell cycle control protein
        1.4    7.8   7.2        2.1    7.1   7.2    1.2  1  NARP1           NMDA receptor-regulated protein 1
          3    5.8  10.5        4.7    5.2  10.5    1.4  1  DNA_pol_phi     DNA polymerase phi
        4.3    7.1  15.1        7.3    6.3  15.1    1.5  1  Pox_Ag35        Pox virus Ag35 surface protein


Domain annotation for each model (and alignments):
>> DUF2461  Conserved hypothetical protein (DUF2461)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.8   0.3   2.9e-80   8.7e-77       1     208 []     124     349 ..     124     349 .. 0.98

  Alignments for each domain:
  == domain 1  score: 257.8 bits;  conditional E-value: 2.9e-80
     DUF2461   1 ntldFLkdLaknNdReWfkahkaeYerakkpfealveelteelaevdpeipelpakdvvfRiyRDvRFskdktpYKthfsaafsrtgrkgpyagyYlhi 99 
                 ntl FLkdL++nN+R+W+k+h+ eY+ra k+++++ve  t+++++vd+++pelp+kdv fRiyRD+RFsk ktpYK+hfsaa+srtgrkgpya+yY+h+
  CCE27204.1 124 NTLLFLKDLKANNRRAWLKSHDGEYRRALKDWQTFVEIATQTVIDVDETVPELPFKDVFFRIYRDIRFSKIKTPYKPHFSAAWSRTGRKGPYACYYIHC 222
                 79************************************************************************************************* PP

     DUF2461 100 epdgsflggGlwapeaatlaklReaidenpeelraileekaflklf.kel.................keealkrapkgfdkdhpdiellklksftvskk 180
                 ep++sf+ggGlw+p+a+++aklR++id++p+++r+ l+e++f+k f  ++                 ke+alk++p g++ +h+diellkl+++t+++k
  CCE27204.1 223 EPGSSFIGGGLWQPQASSIAKLRRSIDRHPDRWRRTLNEASFKKAFfPKIkasagpdavvqafaernKENALKKRPMGYEITHRDIELLKLRNYTIGTK 321
                 **99******************************************6555899*************99999**************************** PP

     DUF2461 181 ledeevlspdlleevaeafkalkplvdf 208
                 +++++++++d++e++a+ ++ l  +v+f
  CCE27204.1 322 IDADFFTKDDVQERLADLIRGLCGFVTF 349
                 *************************987 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   9.9   1.2e-05     0.037     118     205 ..      13     112 ..       4     156 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
       BUD22 118 ktvkevveeivesvkkllgiek..kkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsedeekeeseddeeeeeededdedaee.......... 204
                 +t++ +  +  +s +k   +e+  + +++e+++kk++k+++k ++k eee  +++  ees+d+ +  ++e++dd++ +ee+edd+da++          
  CCE27204.1  13 STIRRRSGRLSTSAQKSSYFEDphDSDESEPAAKKRRKATSKRETKYEEE--SEGRYEESADEAH-HDDEQDDDNDGNEEGEDDDDAPRkvvilplekl 108
                 55555555555555444445553333334444444444433333333333..4555555555555.678888888888888888888776666665555 PP

       BUD22 205 ...d 205
                     
  CCE27204.1 109 rdtG 112
                 5440 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  18.0   0.00087       2.6      66     147 ..      15      95 ..       4     111 .. 0.46
   2 ?    2.5   0.1     0.035     1e+02     109     145 ..     320     377 ..     249     378 .] 0.60

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00087
                 HHHHH-------------------------------------..-------------------------------------- CS
  Cwf_Cwc_15  66 kakkrkkaeleaeeeeekekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeeeeesdddsdsdsdddddedeta 147
                  ++++++ +++a++++  e+ ++++e+ e +ak+r++++ + +++ ++++e + ee+++e +++d+++d+++ +++ ed+++
  CCE27204.1  15 IRRRSGRLSTSAQKSSYFEDPHDSDES-EPAAKKRRKATSKRETKYEEESEGRYEESADEAHHDDEQDDDNDGNEEGEDDDD 95 
                 333333333333333334444444444.445555554544444577777766666555555444444443333333333332 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.035
                 .-----------------.....................------------------- CS
  Cwf_Cwc_15 109 reidaddedseeeeeeee.....................eesdddsdsdsdddddede 145
                 ++idad  ++++ +e+                          d+d+d+ s  d+d de
  CCE27204.1 320 TKIDADFFTKDDVQERLAdlirglcgfvtflngivlpdpGMGDEDDDDGSGGDEDGDE 377
                 4788887766554444336888888888888888887763344444444555555555 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   7.2   0.00071       2.1     403     464 ..      34     100 ..      20     108 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00071
                 T-S-HHHHHHHHHHHHHH.HHHHHHHHHHHHHHH--...........-------------S-SSSTT CS
       NARP1 403 aelseaerkklrkkakka.ekkaekeeaekaekeke....kkaaekkakkedeeakkededplgekL 464
                    +++e + ++kk +ka +k++ k e+e++ + +e    +++ +++ +++d++++ ed+d  + k 
  CCE27204.1  34 DPHDSDESEPAAKKRRKAtSKRETKYEEESEGRYEEsadeAHHDDEQDDDNDGNEEGEDDDDAPRKV 100
                 4556666667777777774333333333333222221211335555666778888888888888776 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  10.5    0.0016       4.7     638     680 ..      53      95 ..      37     155 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0016
  DNA_pol_phi 638 fedededeeddeeeeeeddeededseedddeeesdedeededd 680
                   + e+++ee++e   ee+ +e  +++e dd++++ e+ ed+dd
   CCE27204.1  53 SKRETKYEEESEGRYEESADEAHHDDEQDDDNDGNEEGEDDDD 95 
                  2223333333322222222222222222222222222222222 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  15.1    0.0024       7.3      50     108 ..      36      94 ..       1     139 [. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0024
    Pox_Ag35  50 kqekkkrattprkkpakkekkkkeeekeeaaeeeeledseedeenendedeseesvqae 108
                 +++ + ++ + +++ a++++++k ee++e+ +ee +++ ++d+e+++d+d +ee  + +
  CCE27204.1  36 HDSDESEPAAKKRRKATSKRETKYEEESEGRYEESADEAHHDDEQDDDNDGNEEGEDDD 94 
                 45566778888888888888888888999999999999999999999999988866554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1178  (0.0657036); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 2687.03
//
Query:       CCE27205.1  [L=594]
Description: related to delta-5/delta-6 fatty acid desaturase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-33  115.1  18.1    6.6e-33  114.6  18.1    1.2  1  FA_desaturase  Fatty acid desaturase
    2.8e-09   37.0   0.0    6.4e-09   35.8   0.0    1.5  1  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6  18.1   7.3e-37   6.6e-33       8     251 ..     281     553 ..     275     556 .. 0.80

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 7.3e-37
  FA_desaturase   8 lalllglfllgitgslaHeaaHgalfkkrklnrwlndllgal.lglplgisysawrisHlrHHaytngpdeDpdlaplal.........srfeglf 93 
                     a+ lglf+++i ++ aH+a+H+a++     n  +++l+g + + +++g s  +w+ sH++HH  tn p++Dpd++  +l         s +++++
     CCE27205.1 281 SAICLGLFWHQI-MFTAHDAGHRAIT----ANFTVDTLIGLFiADFCCGLSMGWWKSSHNVHHLVTNQPEHDPDIQNVPLfatcpsffkSLRSTYY 371
                    457899997666.8************....6666688888888*********************************9999*****76654444444 PP

  FA_desaturase  94 ry.............llrlllgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglall.lwlvplllllfl 175
                    ++             + ++ + +++   ++ l+l++w++ l +r+ +  s+++ w ++   + +   +  w++++++l + +l  w + ++++l+ 
     CCE27205.1 372 QFtfvwdkvaevvvpYQKYIYYPVMGIARFNLYLLSWIHVLSKRSSSLGSSKA-WWIRPTEIGFM--ACYWFLFGYVLLWRTLpTWTLRVAFVLVS 464
                    44877777777777777777777777766666666699999999999999987.55555555554..56666666666666667666666666555 PP

  FA_desaturase 176 lalvl.....nyveHyg.........gdwgerqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlrellpehglpyr 251
                    + + +       ++H+g         +++++rq++t+ +++ ++ +l++++g+l+++++HHlfP+vp ++L+++++ ++e++++ g+py+
     CCE27205.1 465 HIVTMplhvqITLSHWGmshsdlgeeESFPQRQLRTTMDVD-CPAWLDFIHGGLQFQAVHHLFPRVPRHNLRKVQDMVKEFCADTGIPYS 553
                    555555566679***********999999999999999999.**********************************************97 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   7.1e-13   6.4e-09      15      72 ..      28      83 ..      16      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 7.1e-13
                EEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEE CS
      Cyt-b5 15 wvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkylvGk 72
                 v++++ V  + ++l khpGg+ ai++  G+Dat+++ ++ hsek ++ + k++++G+
  CCE27205.1 28 IVIFQDYVLRLNSWLAKHPGGSLAIEHMVGRDATDEITAY-HSEKTLRTM-KAFRIGR 83
                588999**********************************.****87777.88***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4240.90
//
Query:       CCE27206.1  [L=382]
Description: related to reductases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-22   79.3   0.0    5.7e-18   65.1   0.0    2.2  2  adh_short     short chain dehydrogenase
    3.4e-12   46.4   0.0    7.5e-09   35.5   0.0    2.1  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    5.8e-05   23.1   0.0     0.0001   22.3   0.0    1.3  1  KR            KR domain
  ------ inclusion threshold ------
      0.011   15.3   0.1       0.33   10.4   0.0    2.2  2  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   1.3e-21   5.7e-18       2     146 ..      57     212 ..      56     216 .. 0.85
   2 !   12.1   0.0   2.2e-05       0.1     143     188 ..     243     288 ..     239     293 .. 0.92

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 1.3e-21
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.......TSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---SS--S CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.......gakalaiqvDvtdreevealvekavkkl..gkldvLvnNAGitgsg 91 
                 v+l+tG+++GIG++++++l++ Ga++++++r  +k+ ++++ l +e       + ++ ++q+++ + ++v+a+ ++   +    +l+vL+nNAG+   +
  CCE27206.1  57 VILITGGTAGIGLETVRALYRTGADIFFTARDLNKASTIKARLLREddgkgapRGNLEFLQLNLDSLASVRAAAQDFLTRSpsPRLNVLINNAGVL--S 153
                 89***************************************9998877654444569********************9999889***********3..2 PP

                 SGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH....HCTTEEEEEEEEGGGTSB-TTB CS
   adh_short  92 pfselseeewervievNltgvflltravlpaml....kqssGrIvnvsSvagkvpvagv 146
                    + + + +er   vN  + +l tr++lp m     +    r+vnvsS   ++ +  +
  CCE27206.1 154 YPYSKTGDGFERHWGVNHLAHYLFTRLLLPVMEesskETFCSRVVNVSSAGHRQMSVRM 212
                 233334445************************665555569*******8776666555 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.2e-05
                 -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short 143 vagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 +  +aaY+ sK a +  ++ + + + p+g+  ++++PG++ Td+ +
  CCE27206.1 243 YSTWAAYAQSKTANIWTANYIDRVYGPRGVHAMSLHPGGIVTDLPA 288
                 6789**************************************9865 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.7e-12   7.5e-09       4     141 ..      65     215 ..      62     217 .. 0.82
   2 !    8.7   0.1   0.00026       1.2     137     186 ..     245     295 ..     237     323 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 1.7e-12
                   TSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE.......EE--TTSHHHHHHHHHHHHHHH..SSEEEEEE-----EGCSS-GGG CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev.......lecDVtdeeqvealveevvekf..gklDilvnnagiapklkgpfle 89 
                    gIG ++++al + Ga++ +t ++ ++    +++ l e+ g+ +       l+++  + ++v+a++++   +    +l++l+nnag+      p+ +
    CCE27206.1  65 AGIGLETVRALYRTGADIFFTARDLNKasTIKARLLREDDGKGAprgnlefLQLNLDSLASVRAAAQDFLTRSpsPRLNVLINNAGVLSY---PYSK 158
                   7********************887777313333334444442223344466*****************99998889*************9...6655 PP

                   H-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC......CEEEEEEEGGGTSBSTTTTHH CS
  adh_short_C2  90 tsreefdraldvnlyslfllakaalplmkeg......gsivnlssvgaervvpnynay 141
                    + ++f+r   vn  + +l+++ +lp+m+e+      +++vn+ss g +++    + y
    CCE27206.1 159 -TGDGFERHWGVNHLAHYLFTRLLLPVMEESsketfcSRVVNVSSAGHRQMSVRMEDY 215
                   .589************************99888999999*******999886665555 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00026
                   TTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT.HH CS
  adh_short_C2 137 nynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg.fd 186
                     +ay+ +K a + ++ y+ + +gp+g+   + +pg i T++ ++++  f 
    CCE27206.1 245 TWAAYAQSKTANIWTANYIDRVYGPRGVHAMSLHPGGIVTDLPAALPAeFT 295
                   4569*************************************9888874233 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.2e-08    0.0001       3      93 ..      58     153 ..      56     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.2e-08
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS...--HHHHHHHHHHHHTT-...EEEE----TT-HHHHHHHHHHHHHHS..S---EEEE------ CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsa.aadedskaliaelealga...evevvaaDvsdkdavealleeikaee..ppikGvihaAgvlr 93 
                  litGG+ g+Gle++r l++ ga  + +++R+  +a+  +++l++e   +ga   + e++++ + + ++v+a+ +++ ++   p+++  i+ Agvl 
  CCE27206.1  58 ILITGGTAGIGLETVRALYRTGA-DIFFTARDLnKASTIKARLLREDDGKGAprgNLEFLQLNLDSLASVRAAAQDFLTRSpsPRLNVLINNAGVLS 153
                 69********************8.599999*9514444455577777778889999*******************9998888899********9986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   7.4e-05      0.33       1      61 [.      58     131 ..      58     136 .. 0.87
   2 ?    2.7   0.0     0.016        71     132     168 ..     238     275 ..     222     328 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.4e-05
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.............EEEE--TT-HHHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.............elveldltdrsalerlfk 61 
                 il+tG+t  iG  +v+al + g ++   +r+ ++  t + + l             e+ +l+l   ++++++ +
  CCE27206.1  58 ILITGGTAGIGLETVRALYRTGADIFFTARDLNKASTIKARLLreddgkgaprgnlEFLQLNLDSLASVRAAAQ 131
                 8***********************99999997777776666558899999999999999999999999888776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.016
                 TTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
   Epimerase 132 ltgpl.kpnspYaaaKlageklveayaaqyglnaiilr 168
                 + +p   +  +Ya +K+a  + + ++ + yg + +  +
  CCE27206.1 238 NLSPAySTWAAYAQSKTANIWTANYIDRVYGPRGVHAM 275
                 33455478889****************99996666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2811.76
//
Query:       CCE27207.1  [L=1498]
Description: probable glucose-regulated protein 78 of hsp70 family [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     2e-262  871.8  15.4   2.9e-262  871.2  15.4    1.3  1  HSP70           Hsp70 protein
    1.9e-47  161.3   0.0    5.3e-47  159.9   0.0    1.8  1  GTP_EFTU        Elongation factor Tu GTP binding domain
    1.2e-24   86.4   0.4    1.2e-24   86.4   0.4    2.7  2  HBS1_N          HBS1 N-terminus
    1.4e-16   60.2   3.8    7.4e-16   57.9   1.3    2.2  2  MreB_Mbl        MreB/Mbl protein
      7e-07   29.3   0.5      1e-05   25.6   0.0    3.0  2  MMR_HSR1        50S ribosome-binding GTPase
    2.6e-05   24.5   0.1    9.4e-05   22.7   0.1    2.0  1  GTP_EFTU_D2     Elongation factor Tu domain 2
    0.00023   21.4   0.0    0.00076   19.8   0.0    1.9  1  GTP_EFTU_D3     Elongation factor Tu C-terminal domain
     0.0044   17.4   3.4        2.3    8.7   0.1    3.8  3  FtsA            Cell division protein FtsA
  ------ inclusion threshold ------
      0.051   12.8   0.5       0.58    9.4   0.1    2.5  2  Hydantoinase_A  Hydantoinase/oxoprolinase
      0.086   12.1   2.3       0.31   10.3   0.0    2.3  2  Septin          Septin
        1.6    8.3   9.5        1.6    8.3   1.5    2.5  2  Borrelia_orfA   Borrelia ORF-A


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  871.2  15.4  1.8e-265  2.9e-262       1     598 [.     875    1479 ..     875    1480 .. 0.99

  Alignments for each domain:
  == domain 1  score: 871.2 bits;  conditional E-value: 1.8e-265
                  EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBE CS
       HSP70    1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengka 97  
                  viGiDLGtt+s+v+vm++gk+e+++n++gnr+tPs+vaFt++erlvG++Ak+qa+ np++t++++KrliGrkfs+++vq++ik++pykv +k +gk+
  CCE27207.1  875 VIGIDLGTTYSCVGVMQKGKVEILVNDQGNRITPSYVAFTDDERLVGDSAKNQAAANPTRTIYDIKRLIGRKFSEKDVQNDIKHFPYKVASK-DGKP 970 
                  79***************************************************************************************999.9999 PP

                  EEEEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEE CS
       HSP70   98 vveveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyD 192 
                  vv+ve+ g   +ftpe++samvL k+ke ae+ylgkkvt+av+tvPaYfnd+qRqatkdAg iAGLnvlRivNepTAaa+aYGldk+++er+++vyD
  CCE27207.1  971 VVKVEVSGSekTFTPEEVSAMVLGKMKEVAESYLGKKVTHAVVTVPAYFNDNQRQATKDAGVIAGLNVLRIVNEPTAAAIAYGLDKTQEERQIIVYD 1067
                  99999987667************************************************************************************** PP

                  EXSSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEE CS
       HSP70  193 lGggtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdl 289 
                  lGggtfdvS+l++++Gvfev+aTagDthlGGedfD+++++h++++++kk+g+d++kd ka+ +lk++aekaK++LSs  q ++++eie+++e g+d+
  CCE27207.1 1068 LGGGTFDVSLLSIDQGVFEVLATAGDTHLGGEDFDQRVINHFAKTYNKKNGVDITKDLKAMGKLKREAEKAKRTLSS--QMSTRIEIEAFFE-GNDF 1161
                  *****************************************************************************..89999999*****.**** PP

                  EEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT.CHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCE CS
       HSP70  290 seklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsktvnpDeavaiGAAvqagvlsgeeevkdll 385 
                  se+l+Rakfeel+ dl+++t++pve++lkda++kk eid++vlvGGstRiPkvq l++e+fg k++sk++npDeava GAAvqagvlsgee +++++
  CCE27207.1 1162 SETLTRAKFEELNIDLFKKTIKPVEQVLKDANVKKTEIDDIVLVGGSTRIPKVQALIEEYFGgKKASKGINPDEAVAFGAAVQAGVLSGEEGTEEIV 1258
                  *************************************************************99********************************** PP

                  EEEBESS-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEE CS
       HSP70  386 llDvtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvs 482 
                  l+Dv+pL+lgiet+ggvmtkli+rnt ipt+ksq+fstaadnq+ v i+v++ger+l+kdn++lg+fel+gippaprGvpqieV+f++danGil+vs
  CCE27207.1 1259 LMDVNPLTLGIETTGGVMTKLIPRNTPIPTRKSQIFSTAADNQPVVLIQVFEGERSLTKDNNNLGKFELTGIPPAPRGVPQIEVSFELDANGILKVS 1355
                  ************************************************************************************************* PP

                  EEETTTCCEEEEEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...GGGSTHHHH....HHHHHHHHHHHCHT CS
       HSP70  483 akdketgkeeeitieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee...aekvseaek....ekvesaieeLkeel 571 
                  a+dk+tgk+e+iti++++g l++eei++mv +ae++aeedk+++e+iea+n +e++  +++++l+++   + k++e+ek    e++++++e+L+e++
  CCE27207.1 1356 AHDKGTGKQESITITNDKGrLTQEEIDRMVAEAEKFAEEDKATRERIEARNALENYTFNIKNQLNDAdglGGKIDEEEKetltEAIKETTEWLDENG 1452
                  *******************9**********************************************999999*****99999999************ PP

                  TSSCHHHHHHHHHHHHHHHHHHHHHHH CS
       HSP70  572 eeeekeeieakteelkkvvekiaekly 598 
                  +e+++e++e+++e+l++v+++i++k+y
  CCE27207.1 1453 AEASAEDFEEQREKLSNVAYPITSKMY 1479
                  *************************98 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   0.0   3.2e-50   5.3e-47       2     183 ..     438     645 ..     437     721 .. 0.89

  Alignments for each domain:
  == domain 1  score: 159.9 bits;  conditional E-value: 3.2e-50
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH...HHHST.............HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGH CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgeka...eeerv.............lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFs 84 
                 + + ++++ghvD+GK+TL++rLl +++ +++++ ++   +   +             +D++ eErerg+Ti++a+ ++e  t +++++++D+PGH+dF+
  CCE27207.1 438 KSISFVVVGHVDAGKSTLMGRLLLELKFVQERTVDKyrrQ---AektgkqsfalawvMDQRTEERERGVTIDIATNHFE--TPTTKFTILDAPGHRDFV 531
                 66899**************************998885432...245689999***************************..****************** PP

                 HHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTE.EEEEEESCGST...HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEB CS
    GTP_EFTU  85 kevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvp.iivfiNKmDrl...kaelkeiveevkqklsrkeeklekygekgekevpvvfgS 174
                  ++i+g++++D+a+lv+da+ G      + qt+e++ l++++gv+ +iv++NK+D++   +++++ei ++v   +      l+  g++++  v+++++S
  CCE27207.1 532 PNMIAGASQADFAILVIDANTGayekgLKGQTKEHVLLLRSLGVQrLIVAVNKLDMVgwsQERFDEISQQVL-GF------LTGLGFQSK-LVSFIPIS 622
                 ********************6666666******************************999999999999999.55......689999995.******** PP

                 TTTTBTHH..............H CS
    GTP_EFTU 175 alkgegvk..............t 183
                 +l+g+++               t
  CCE27207.1 623 GLNGDNIAsktedaaaawytgsT 645
                 *****998555555555555554 PP

>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.4   7.4e-28   1.2e-24       1      77 [.      10      84 ..      10      85 .. 0.96
   2 ?    0.8   1.9      0.37   6.1e+02      15      44 ..    1418    1456 ..    1379    1463 .. 0.73

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 7.4e-28
      HBS1_N  1 ddydseddeeeeeeeeLsdedqarLrscldevrevLgeeaskvtvtekqikeAlwkyyyDvekaldyllnkfkkkkp 77
                dd++++d++e+e ee Ls+ed+a ++++++ v++ Lg+ askv  t +qi+eAlw+y+yDv+k+++yl +kf+ ++p
  CCE27207.1 10 DDLYDGDEYEDEAEEGLSAEDKAAMEKGTADVKKSLGASASKV--TVEQIQEALWHYFYDVDKSVAYLSKKFIAPPP 84
                7999*********************************999996..****************************9997 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.37
      HBS1_N   15 e.........eLsdedqarLrscldevrevLgeeaskvt 44  
                  +         ++++e+++ L ++++e  e L+e+ ++ +
  CCE27207.1 1418 QlndadglggKIDEEEKETLTEAIKETTEWLDENGAEAS 1456
                  033344788899*************99999997766654 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.036        59       3      23 ..     875     895 ..     873     937 .. 0.72
   2 !   57.9   1.3   4.5e-19   7.4e-16      91     316 ..    1006    1242 ..     985    1249 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.036
                 EEEEEE-SSEEEEEETTTEEE CS
    MreB_Mbl   3 dlgiDLGtantlvyvkgkgiv 23 
                  +giDLGt+   v v +kg v
  CCE27207.1 875 VIGIDLGTTYSCVGVMQKGKV 895
                 59********99988777754 PP

  == domain 2  score: 57.9 bits;  conditional E-value: 4.5e-19
                  SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEE.EE-SS-EEEEEEETTEEE.....EEEEES-SHHHHH CS
    MreB_Mbl   91 lskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvv.diGggttevavislggiv.....tsksvrvaGdeld 181 
                   + ++ v++vP   ++ +r+A k+a   aG +   +++ep aAAi  gl+ ++ + +++v d+Gggt +v+++s+ + v     t+   +++G+++d
  CCE27207.1 1006 KKVTHAVVTVPAYFNDNQRQATKDAGVIAGLNVLRIVNEPTAAAIAYGLDKTQEERQIIVyDLGGGTFDVSLLSIDQGVfevlaTAGDTHLGGEDFD 1102
                  3556789******************************************988887776655*************98654222225667899****** PP

                  HHHHHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHH........EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHH CS
    MreB_Mbl  182 eaiikyirkkynlliGertaekikieigsavkeeeee........kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaa 270 
                  + +i++  k+yn   G   ++++k  +g+++ e+e+         +++i+     +g   + +++ ++ +e   + +++ ++ v++vL+++     +
  CCE27207.1 1103 QRVINHFAKTYNKKNGVDITKDLKA-MGKLKREAEKAkrtlssqmSTRIEIEAFFEGNDFSETLTRAKFEELNIDLFKKTIKPVEQVLKDANVK-KT 1197
                  ************9999888888774.455444433332334333567788888999999999999999999999999999********998754.33 PP

                  HHHHH-EEEESGGGGSBTHHHHHHHHHSS.-EEE-SSTTTHHHHHHH CS
    MreB_Mbl  271 divdrgivltGGgallkgldkllseetgl.pvkvaedpltcvakGtg 316 
                  +i    ivl+GG++ +  ++ l++e +g  + + + +p ++va G++
  CCE27207.1 1198 EI--DDIVLVGGSTRIPKVQALIEEYFGGkKASKGINPDEAVAFGAA 1242
                  44..4599*****************9975156778899999999876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   6.3e-09     1e-05       2      99 ..     442     568 ..     441     584 .. 0.68
   2 ?   -3.2   0.1       5.5     9e+03      21      71 ..    1386    1442 ..    1381    1453 .. 0.50

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 6.3e-09
                 EEEEESTTSSHHHHHHHHH...................T............STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt...................g............ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgka 69 
                 +++vG+  +GKStL+ +l+                   +            ++   +++ g+T+di + ++++  ++++++D pG  +    +  + + 
  CCE27207.1 442 FVVVGHVDAGKSTLMGRLLlelkfvqertvdkyrrqaeKtgkqsfalawvmDQRTEERERGVTIDIATNHFETPTTKFTILDAPG--H----RDFVPNM 534
                 589***************977777777766666655550555666555442344557778******99999987899********..4....2346777 PP

                 HHHHHCTSEEEEEEETT....TTCSHHHHHHHHH CS
    MMR_HSR1  70 flaleeadlillvvdas....eeklkpldeelee 99 
                 ++   +ad ++lv+da+    e++lk + +e   
  CCE27207.1 535 IAGASQADFAILVIDANtgayEKGLKGQTKEHVL 568
                 7777889********9965553344444444333 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.5
                  TSTEEESSSTTSSSSEEEEEEEETTEEE....EEEECGGCSS...HHHHHHHHHHHHH CS
    MMR_HSR1   21 gekaivsdkpgtTrdinegrvklkgkei....elvDtpGlie...gaseekglgkafl 71  
                   e+ + +++  +Tr+ +e+r +l++  +    +l D  Gl     +++e++ l++a++
  CCE27207.1 1386 AEAEKFAEEDKATRERIEARNALENYTFniknQLNDADGL-GgkiDEEEKETLTEAIK 1442
                  5555666677777777777655332222111156666663.21222333334444444 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   5.7e-08   9.4e-05       2      74 .]     681     747 ..     680     747 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.7e-08
                  EEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   2 tvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  t+  gr+  Gt++ Gd v +  ++++++     i+s+ +    +++avag+ + + +  ++  + i+vGd+l+
   CCE27207.1 681 TTLAGRIDAGTIQIGDAVIV--QPSGES---AYIKSIMVDADSQEWAVAGQSVSIALTDIDPIH-IRVGDILC 747
                  56779***************..999999...*********************************.******98 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.7e-07   0.00076      37     106 ..     782     844 ..     773     846 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.7e-07
                  EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEEEECTTCEEEEE CS
  GTP_EFTU_D3  37 dvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFaiReggrTvaaG 106
                  + +g++ ++ ++ldk t++v +kkp++v+pG  + v v+l +++ lek         Fa+   ++T a G
   CCE27207.1 782 HAAGQIHSIPATLDKATGEVIKKKPKVVQPGGVARVMVKLASKVPLEKAY-------FAMARSRSTFALG 844
                  77899999****************************************98.......8877777777776 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.021        33       1      34 [.     876     907 ..     876    1028 .. 0.71
   2 !    8.7   0.1    0.0014       2.3       4      87 ..    1067    1228 ..    1064    1245 .. 0.68
   3 ?    2.0   0.2      0.17   2.8e+02      29      76 ..    1365    1409 ..    1350    1482 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.021
                 EEEEE-SSSEEEEEEETTEEEEEEEES-.-HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigv.ggngit 34 
                 +++D+G++ ++v v+++g   +++++   +gn it
  CCE27207.1 876 IGIDLGTTYSCVGVMQKG---KVEILVNdQGNRIT 907
                 58***************9...45554334555555 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0014
                  EE-SSSEEEEEEETTEEEE.................EEEES-........-HHHHHHHHHHHHT--HHHHHHHHHHH--S--............... CS
                  xxxxxxxxxxxxxxxxxxx.................xxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF
        FtsA    4 DiGagktdvavaedgalvh.................lrvigv........ggngitkdiakalrtaveeAerikikyGsala............... 60  
                  D+G+g+ dv++++ ++ v+                  rvi+         +g  itkd++ a+++   eAe+ k++  s+++               
  CCE27207.1 1067 DLGGGTFDVSLLSIDQGVFevlatagdthlggedfdQRVINHfaktynkkNGVDITKDLK-AMGKLKREAEKAKRTLSSQMStrieieaffegndfs 1162
                  777777777777776644445555566666666666566655666677788999999998.88999999*****99999998888888888877776 PP

                  ..........EEEEEHHHHH................................GGGGSTTHHHHHHHHH.....T CS
                  ..........xxxxxxxxxx................................xxxxxxxxxxxxxxxx.....x RF
        FtsA   61 ..........ekeigrkels................................ggsalpnleelaeral.....s 87  
                                     +                                g++ +p+++ l+e+ +     s
  CCE27207.1 1163 etltrakfeeL--------NidlfkktikpveqvlkdanvkkteiddivlvgGSTRIPKVQALIEEYFggkkaS 1228
                  66555554440........155555555566666666667777777999999999********99998544330 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.17
                  -HHHHHHH....HHHHHT--HHHHHHHHHHH--S--EEEEEHHHHHGGGGST CS
                  xxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA   29 ggngitkd....iakalrtaveeAerikikyGsalaekeigrkelsggsalp 76  
                  ++  it+d    +++ +   v+eAe+ + +        + +r++++  +al+
  CCE27207.1 1365 ESITITNDkgrlTQEEIDRMVAEAEKFAEE-------DKATRERIEARNALE 1409
                  5778999999*999999********99933.......333444454333333 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.2   3.2e+02      68     105 ..     863     899 ..     852     909 .. 0.80
   2 ?    9.4   0.1   0.00036      0.58      61      97 ..    1044    1079 ..    1029    1096 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.2
  Hydantoinase_A  68 gaaatsklagekkvItfDmGGTstDvslikdgevevsl 105
                      ++a  +++++  vI++D+G T   v ++++g+ve+  
      CCE27207.1 863 SVQA-DETDNYGTVIGIDLGTTYSCVGVMQKGKVEILV 899
                     4444.67788889********************99865 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00036
  Hydantoinase_A   61 GPaaGvvgaaatsklagekkvItfDmGGTstDvslik 97  
                       P a ++++    k+++e+++I++D+GG ++Dvsl++
      CCE27207.1 1044 EPTAAAIAYGL-DKTQEERQIIVYDLGGGTFDVSLLS 1079
                      56666666665.7899999**************9865 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00019      0.31       5      78 ..     440     533 ..     437     543 .. 0.83
   2 ?    0.3   1.0      0.21   3.5e+02      35      93 ..    1388    1445 ..    1358    1464 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00019
                 EEEEEEEBTTSSCCCCCCTTSSS.S----.....................--------------S-EEEEEEEEETTCEEEEEEEE---BSSSSSH CS
      Septin   5 ftlmvvGesglGkttlintlfet.dliee.....................ekleeasekkkktveikkkkvvieedgvklnltviDtpgfGdavdn 78 
                 +  +vvG+   Gk+tl+  l+ + + ++e                       +++++e+ ++ v+i+ +++  e   +  ++t++D pg+ d+v n
  CCE27207.1 440 ISFVVVGHVDAGKSTLMGRLLLElKFVQErtvdkyrrqaektgkqsfalaWVMDQRTEERERGVTIDIATNHFETPTT--KFTILDAPGHRDFVPN 533
                 6789*************9987651445557899999999999999999875677888899999999999999998855..57999****9999987 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.21
                  ------------S-EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHH CS
      Septin   35 leeasekkkktveikkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqf 93  
                   e+ +e+ k t e  ++++ +e+  ++++ ++ D +g G ++d ++  e++ e i+e  
  CCE27207.1 1388 AEKFAEEDKATRERIEARNALENYTFNIKNQLNDADGLGGKIDEEEK-ETLTEAIKETT 1445
                  3444455566666667788899999******************8764.77777777655 PP

>> Borrelia_orfA  Borrelia ORF-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.5   0.00096       1.6     110     199 ..    1099    1189 ..    1096    1206 .. 0.67
   2 ?    3.8   1.3     0.023        37     132     220 ..    1378    1476 ..    1360    1497 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00096
  Borrelia_orfA  110 ekikkrvnnyikkelnknnsvkklecinniaknksneeekkksiekeqlkkyikkkkkkskkslsiln..lnikkdikiklikiikkeeiai 199 
                     e++ +rv n+++k++nk+n v+  ++++ + k k +e ek k+  ++q++  i+   + + + +s      ++++ +     k ik+ e  +
     CCE27207.1 1099 EDFDQRVINHFAKTYNKKNGVDITKDLKAMGKLK-REAEKAKRTLSSQMSTRIEIEAFFEGNDFSETLtrAKFEELNIDLFKKTIKPVEQVL 1189
                     6899*************************97775.577788888888999999887654444433333134443333333334444444433 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.023
  Borrelia_orfA  132 klecinniaknksneeekkksiekeqlkkyikkkkkkskkslsiln...lnikkdikiklikiikkeeiaie.......ikklknkqktlkniL 215 
                     + e+    a+ ++  ee+k  +e    ++  ++ ++++k++l        +i++++k  l + ik++   +         ++++++ ++l n+ 
     CCE27207.1 1378 QEEIDRMVAEAEKFAEEDKATRERIEARNALENYTFNIKNQLNDADglgGKIDEEEKETLTEAIKETTEWLDengaeasAEDFEEQREKLSNVA 1471
                     4444444445555567899999999999999999999999999999988999999999999999988766667888888888888888888876 PP

  Borrelia_orfA  216 rnlkk 220 
                     + +  
     CCE27207.1 1472 YPITS 1476
                     65555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       943  (0.0525964); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.48
# Mc/sec: 9359.09
//
Query:       CCE27208.1  [L=421]
Description: related to UTP5 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.2e-25   87.0   0.2    1.7e-24   86.2   0.2    1.4  1  Utp12        Dip2/Utp12 Family
  ------ inclusion threshold ------
        2.1    7.6  35.6        1.7    7.9   3.3    2.2  2  BUD22        BUD22


Domain annotation for each model (and alignments):
>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.2   1.9e-28   1.7e-24       2     105 ..     167     268 ..     166     270 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 1.9e-28
                 HHHHHH.HHHSS-TTTHHHHHHCS-CTCHHHHHHHHHHHH.HTTTTHHHHHHHHHHHHHHHHHHHHHSH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Utp12   2 deelleevlekippsdirltvlrLpssyvlkLLeflaerlaeksphlelllrwlkallrvHgsylvaspsdlvpaLrslqkslrerlktlskllglnlg 100
                 d+elle++l++++  +ir+t+ r++ss++ +LL+ la rl++++ ++  l+ w++++l +Hg+ l+++p+ +v +L++lqk+l+er+k l++ll+l+ g
  CCE27208.1 167 DTELLESCLHTTDLPTIRNTIERIDSSLAGNLLNKLAARLHRRPGRAGNLMTWVQWTLISHGGSLASQPK-VVHSLNGLQKVLAERAKGLNSLLALK-G 263
                 89*******************************************************************7.**************************.* PP

                 HHHHH CS
       Utp12 101 rLdyl 105
                 +Ld+l
  CCE27208.1 264 KLDLL 268
                 ***98 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.3   0.00019       1.7     167     240 ..      34     107 ..       9     159 .. 0.58
   2 ?    5.6  24.4   0.00095       8.5     156     273 ..     289     409 ..     241     421 .] 0.43

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00019
       BUD22 167 eesdkeeesedsed.eekeeseddeeeeeededdedaeedeedeeaeerelaqydglla.sddededeyneetdee 240
                  +++++  ++++ d  e +++++++ee+ +d+++eda++  + + ++++++a+y +  + s + dede+++e++++
  CCE27208.1  34 SVAGADAIQSSQLDmIEISSDAASDEEDISDAEMEDAGDVPNGSISKKESAAAYVN--GkSTKADEDEAEDESHNG 107
                 33444444444444533344444555566666667777755556666666777755..335555555212222222 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.00095
       BUD22 156 kkkkkkeeeeeeesdkeeesedsed....eekeeseddeeeeeededdedaeedeedeeaeerelaqydgllasddeded.....eyneetdeessees 245
                 ++++++e++++ +++ e +  +++d    +  ++ ++ ++++ ++ dd+d+ee   d+++ee+e+   +++ +s de+ed     e++++  ee+ +e+
  CCE27208.1 289 ESSDEDEDDDTIWVEGETDTVSRKDtngyT--AKPKRRRNQKISKHDDDDSEE---DDDDEEEEVHLPNAIGDSQDEEEDsdpqeEDDSDAAEEPLDEN 382
                 333333333333444444444444445442..222222222222222222222...2333333333333344555555554444322333333333333 PP

       BUD22 246 dssdssesasesesessekkkkkkkkkk 273
                 + ++++  +s  e+e+se  +++ +++k
  CCE27208.1 383 EVDHDDVDESLGEDEESEV-EAAAPPSK 409
                 3333333333333333333.22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1189  (0.0663171); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 2730.76
//
Query:       CCE27209.1  [L=911]
Description: related to bromodomain protein BDF1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      9e-27   93.0   0.0    5.8e-17   61.5   0.0    2.6  2  Bromodomain  Bromodomain
    4.8e-15   55.5   0.3    1.3e-14   54.1   0.3    1.8  1  BET          Bromodomain extra-terminal - transcription regul
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.28   10.9   0.0    1.6  1  Siva         Cd27 binding protein (Siva)
       0.36   10.0   1.8       0.58    9.3   1.8    1.2  1  PAC1         Proteasome assembly chaperone 4


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.4e-10   1.1e-06       2      81 ..     311     395 ..     310     398 .. 0.86
   2 !   61.5   0.0   1.3e-20   5.8e-17      10      74 ..     527     593 ..     516     605 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.4e-10
                  HHHHHHBHTTTCGGGGCSTT...-GCCSTTHHHH.SS---HHHHHHHH..HTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHH CS
  Bromodomain   2 ekilsellehklaepFlepv...dpeefpdyyavikkPldLstIkkkl..esnkYksladfeadlkllfsNarkyngegsviyel 81 
                  +ki+  + ++k+  +F+e v   +p  +  y  ++ +P+dL+++ + l    + Y+++ +f++dl l+f+Na  +ng+ ++i+++
   CCE27209.1 311 RKIVGRIRKTKAGGHFRESVqklWPGLWDSYVVKVPRPMDLAELDRGLrdPAGPYHTYGEFRKDLGLIFENALNFNGPLHDITAS 395
                  6777777788888888888888888888999999**************666689************************9998876 PP

  == domain 2  score: 61.5 bits;  conditional E-value: 1.3e-20
                  TTTCGGGGCSTT..-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHT CS
  Bromodomain  10 ehklaepFlepv..dpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkynge 74 
                   h+ +++F++pv  ++ + pdyy+vikkP+dL+++ + l  ++++sl +fe+ ++l+f+N+ k+ng+
   CCE27209.1 527 HHDMNQWFMDPVdaEGLNIPDYYSVIKKPMDLNKVSRMLSGGEISSLREFEKTVRLIFDNCFKFNGP 593
                  4789********99999************************************************95 PP

>> BET  Bromodomain extra-terminal - transcription regulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.3   2.9e-18   1.3e-14       2      63 ..     761     822 ..     760     823 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 2.9e-18
         BET   2 mtyeeKkeLseeInkLpgeklgrvveIIqerepelqsdedEiElDidaldddtLreLekyvk 63 
                 +t+++K  ++++In+L++ +++r+++II+++  + +++ +E+ElDid+l+ d L++L++ ++
  CCE27209.1 761 LTAAQKDLIANGINDLESPYMDRAIDIIKKDTGQNENNHGELELDIDQLSHDALCKLWDICR 822
                 799*****************************544499********************9876 PP

>> Siva  Cd27 binding protein (Siva)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.1e-05      0.28      48     117 ..     395     461 ..     389     489 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.1e-05
        Siva  48 kGakavldkiwdeeeaideeesskpgevsapqlarGqmliGqdGkliralaqsseasptgasiacsscvr 117
                  Ga av   iw+e   i  ee++kp  +  p+ ar    iG+  +++r +    +asp+    a ss + 
  CCE27209.1 395 SGATAVKA-IWEEVLPIPSEEPPKPRAMPKPKPARESRTIGNTEQFVRPQFTGPRASPAV--DATSSTKA 461
                 69999988.***************************************976666666554..22222222 PP

>> PAC1  Proteasome assembly chaperone 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.8   0.00013      0.58      15     108 ..     637     726 ..     630     736 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00013
        PAC1  15 AvdedeeeeleeeneedeeirreleekrevkvkwnpekseleesaeeklqcsklilavGenAagFlsayvlssenweavgavklwnersrtseq 108
                   dede  + e+e+ ed  +   ++ k   +++  +  +e+++ ++  l +++ ++ + +n +  ++  ++++++  + ++++ +n+rs++s +
  CCE27209.1 637 GSDEDE--DDEDEDGEDATVA-VIDSKEIEELQA-KLDEETKKLNSMLLTSNQSMIDIQKNIVDMVQKTLIAKAQEVQAARARAKNDRSKKSGK 726
                 444554..3345777877764.466665555554.444777777788999***********************999999999*******98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1297  (0.0723409); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 5803.90
//
Query:       CCE27210.1  [L=319]
Description: related to thiamin pyrophosphokinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-09   36.6   0.0    6.7e-09   35.9   0.0    1.4  1  NUDIX     NUDIX domain
    1.6e-05   24.9   0.0    2.6e-05   24.2   0.0    1.3  1  DUF4743   Domain of unknown function (DUF4743)


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   7.5e-13   6.7e-09       7     118 ..     146     268 ..     140     280 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 7.5e-13
                 EEEEEETTSE..EEEEEES..SSSTTT.EE.SSEEECBTTSHHHHHHHHHHHHHHSEEEEEE....EEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSG CS
       NUDIX   7 gvvllnekge..vLlvrrs..kkpfpg.We.lPgGkvepgEtpeeAArREleEEtGleaell....ellgrlhylapydgpygdeheilyvfleevege 95 
                  ++++ +kg   ++++rrs   +  pg  + +++G+v+++ +p ++ + E++EE+ l+++l+    + +g ++  ++    +    eilyv+  e+  +
  CCE27210.1 146 TCYVRSPKGPpmIWVARRSakIYSYPGlLDsTVAGGVKADHSPLDCILAEAAEEASLPEDLVakhvRSIGTVTLSHTNARNNLHHSEILYVYDLELPAD 244
                 5778999999999999999877777776555********99***************866555554477776666666666666699*******666666 PP

                 CSST.STTTEEEEEEEEHHHH.HHH CS
       NUDIX  96 lepn.denevsevrwvpleel.lke 118
                 + p+ +++ev+e+ +++ +e+    
  CCE27210.1 245 VIPRpNDGEVDEFLLMSCDEVrT-R 268
                 666667**************932.2 PP

>> DUF4743  Domain of unknown function (DUF4743)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.9e-09   2.6e-05      29     119 ..      48     138 ..      44     140 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.9e-09
                 EEEEEHHHHHHHCT-TTTEEE-SS..EEEE-T...T--SHHHHHHHHHHHHHHHHHTT...SS----S-EEEE-SSTTS---EEEEGGGTGGGT- CS
     DUF4743  29 vGlirpdvaeklrkfpdvFevseke.aveLap...slktyeeRtaaveevleelreegsfvalkgwRdElYeVrasfsdppllkleRaaaplfGv 119
                  G+i+pd ++++  +p+ F+v+++e +v+L+p     +  ++  aa ++ +++  e++ f  l+g++ E+++++    +++++++eR aa+lfGv
  CCE27210.1  48 HGYIHPDTVSRM-PWPSSFTVNHEErHVTLSPcppGTSLTAHANAAFQQAVDSAIEKNVFPSLNGLHSEHFRIVG---ARSFVQVERYAASLFGV 138
                 59*******997.6*******99998999986222355566677899*************************986...566*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2437.18
//
Query:       CCE27211.1  [L=411]
Description: related to 1,4-butanediol diacrylate esterase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-52  176.5   3.1    1.2e-51  176.0   3.1    1.2  1  Beta-lactamase   Beta-lactamase
      0.001   18.7   0.2      0.076   12.6   0.0    2.3  2  Beta-lactamase2  Beta-lactamase enzyme family
  ------ inclusion threshold ------
      0.015   14.8   0.0       0.08   12.4   0.0    2.0  2  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.0   3.1     2e-55   1.2e-51      12     324 ..      20     392 ..      12     398 .. 0.87

  Alignments for each domain:
  == domain 1  score: 176.0 bits;  conditional E-value: 2e-55
                     TTESEEEEEEEETTEEEEEEEEEEEETTTTE.EESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTST................TCTTG CS
  Beta-lactamase  12 ggipGvavavvrdgkvvldkggGvadleggr.pvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylP................efagp 89 
                     g+i G+a++v++++ ++++ ++G  dl+ +  p+t +tl   aS+tK++t++av+qlve+ +l+Ld+ V   +P                +   +
      CCE27211.1  20 GKITGAAFVVTDKDGTIYTGSAGRLDLDPKSaPWTDKTLTWAASLTKLVTTVAVMQLVEQRRLSLDQDVRPLVPelqdarilrrfdehdkPIYEA 114
                     569***********************999888*************************************88888888888888999998888999 PP

                     GGTTEBHHHHHTTHSSCSSSSTSTTCTSHHHTH........HHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHHTSHHHHHHHHHTTTTT CS
  Beta-lactamase  90 gkgkiTlrdLltHtsGlpdlfasdlleeaaada........aellralatlppkyapGtkwgYsntgygllgellekvtgrsleqllreeilrpL 176
                       ++iTlr+LltHtsG  ++ +sd + +  a+          +  r+  t p+++ pG++w+Y +  + ++g+lle vt++sl+q+++ +i++ L
      CCE27211.1 115 NNQPITLRQLLTHTSGANYE-FSDSVLTKWARTmpdrdlsrIQWSRQEITNPLRFGPGEAWSYGAGLD-WAGLLLETVTSTSLGQYMQANIFDRL 207
                     9****************888.77777776666678888888788888888888888***********9.************************** PP

                     TSTTEESSTTGGGGGGBEEEEEEETCEEECSCETTHHHHC......TTTBEEEEHHHHHHHH.............................HHHH CS
  Beta-lactamase 177 gmkdtelgppesgdprdaagytgngpearappanlpaeae......gagglistardlarfl.............................glal 236
                     gm+dt+++p+    ++ ++++++++++     +  ++ +e      g++gl++ta+d a +l                             +l  
      CCE27211.1 208 GMTDTGFWPDHIPHAAARTAADTKRKTNLTLGPASSPTPEkhdlesGGAGLFTTAADFACLLrellrvtqhgtqhgssvlsaqtaremltpQLDE 302
                     ***********999999999999999999998888888889*****************************9888877777777777766666666 PP

                     HCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCH....TEEEEEEESTEEEEEEEECGGTEEEEEEESBCSSHHHHHHHHHH CS
  Beta-lactamase 237 egglllsaetlaqltaklssgttrpagiraglglGwvladktga....pgtfghtGggygtyvfvdpeanlvvavltnrdppnedaaedarl 324
                     ++ + l+++++++ +++  +++ +  g++ ++glG +l+ ++ +    +g++ ++G   ++ +++d ++++++++ +n + + +++a++ + 
      CCE27211.1 303 AQVRSLQRKIYNPSAHSIFAPE-FEVGQPLNYGLGGMLNTQDVPgkrrAGSIAWSG-ILNSRWWLDSKTGIAAVLIVNVQSNGDPVAAKLYD 392
                     6666666666666655555544.466668888*******99999************.***********************987776666555 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.3e-05     0.076      16      45 ..      60      89 ..      53     130 .. 0.76
   2 !    4.0   0.1    0.0056        33     127     170 ..     259     302 ..     185     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
                     E-GGGGHHHHHHHHHHHHHCTSTGTT-EEE CS
  Beta-lactamase2 16 paaStiKvpillalleavlegklslderlt 45
                      aaS+ K++  +a+++ v++++lsld+ ++
       CCE27211.1 60 WAASLTKLVTTVAVMQLVEQRRLSLDQDVR 89
                     59*************************997 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0056
                      EE-HHHHHHHHHHHHHTTSSHHHHHHHHHHT-STTTTTTTTTTT CS
  Beta-lactamase2 127 tttardlarllealargellspeelleilsnqqfrdrlaaglpe 170
                       tta+d+a ll++l r +    ++  ++ls+q+ r++l+ +l+e
       CCE27211.1 259 FTTAADFACLLRELLRVTQHGTQHGSSVLSAQTAREMLTPQLDE 302
                      69**************8877776677889999999999988874 PP

>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05      0.08      38      66 ..      61      89 ..      54     127 .. 0.88
   2 ?   -0.2   0.0     0.089   5.3e+02     152     169 ..     258     275 ..     204     302 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
                   -GGGHHHHHHHHHHHHHHTTSS-TTSEEE CS
  Peptidase_S11 38 iASltKlmTaylvlealkkgklkeddkvt 66
                    ASltKl+T++ v++ +++ +l +d+ v+
     CCE27211.1 61 AASLTKLVTTVAVMQLVEQRRLSLDQDVR 89
                   69***********************9987 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.089
                    CBB-HHHHHHHHHHHHHH CS
  Peptidase_S11 152 qvssArdlailakallkd 169
                    ++ +A d a l+++ll+ 
     CCE27211.1 258 LFTTAADFACLLRELLRV 275
                    388999*****9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3038.42
//
Query:       CCE27212.1  [L=497]
Description: uncharacterized protein CPUR_00684 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-06   26.9   0.0    9.7e-06   26.1   0.0    1.4  1  SET              SET domain
  ------ inclusion threshold ------
      0.018   14.6   0.0        5.3    6.5   0.0    2.2  2  PmoA             Methane oxygenase PmoA
       0.19   10.6   0.0       0.28   10.1   0.0    1.1  1  Adenylsucc_synt  Adenylosuccinate synthetase


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.6e-09   9.7e-06      10     169 .]      50     279 ..      46     279 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.6e-09
                 BXTTXEEEEEEECCEECHHHHHHHHHH...........................................HTEEEEEXG.GXX.......GGSXHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx...........................................xxxxxxxxx.xxx.......xxxxxxxxx RF
         SET  10 Ipkgeficeypeeiiltkdeadksele...........................................aylfslpea.pkn.......laftkelak 57 
                 +++ e i+++p  + l+  +a+  +++                                           +y++ lp    kn       ++++ ++a+
  CCE27212.1  50 VQAFEPIVQLPATLSLSYLDAVAQQKQqqqkeqqddapfpeevlaetpphvvgrlflvreylrgrssfwwPYIQALPQPgLKNrrawalpPFWDTDEAE 148
                 5555666655544555555555555445556666778888888888888888888888888889999999999999977633366778866666***** PP

                 HHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSXXXHCCCCC.HCCCHEEEETEEEEEECCC....................GTTGGGCEEXSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxx RF
         SET  58 asastllqklakdqkqaekedtdaalkasskaesdlnaskpeagaf.saiagysidaralksgnga....................gplarflNHsCdp 135
                 + + t+++   ++ +q+ ++++++a k  s ++ + +  +++  a   ++a++++ +r++  +                        pl++  NH+ + 
  CCE27212.1 149 LLDGTNVEVGIAKVRQDVQSEFAHARKLLSACAVRDPILDEGLTADlYQWAYCIFASRSFRPSLVLldarrralpagvamddfsmlLPLLDVGNHDMTV 247
                 **********************************99987777777789999999774444444444555555555555559999***********9855 PP

                 SEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 136 NcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                 ++  +++  ++  +  +   ++ ++Ge+++++Yg
  CCE27212.1 248 HV--RWELDHHAEQCSLLVGKEHQPGEQIFNNYG 279
                 55..6666669**********************8 PP

>> PmoA  Methane oxygenase PmoA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0015       8.7     128     162 ..      11      46 ..       4      87 .. 0.82
   2 ?    6.5   0.0   0.00089       5.3     210     261 ..     296     346 ..     281     354 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0015
        PmoA 128 awlldfdstltalsd.pvtlgspkyGglfwRvarel 162
                 ++l+d+ ++l a+   +v+  +++++gl++Rv+ + 
  CCE27212.1  11 TTLVDWAVSLGATLHpSVEVYDDAQTGLSFRVKPSA 46 
                 6789****************************9987 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00089
        PmoA 210 psnpnyPtywfvRtyglfaanpsalafdeeltlepgesltlryrvvvadgal 261
                 +s+  + +y +vR+ g ++ +p +   + ++ l++++++ ++ r + ++ +l
  CCE27212.1 296 TSEALHNDYIHVRKRGAPGPQP-SNPSNTSTSLNASHEYLISLRPLAHPSTL 346
                 5666799*************99.9999************9999999998876 PP

>> Adenylsucc_synt  Adenylosuccinate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   4.6e-05      0.28      47      93 ..     411     458 ..     406     486 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 4.6e-05
                      EEESSS-GGGGSTT-EEEE-TTBEE-HHHHHHHHTTSS-TT....... CS
  Adenylsucc_synt  47 yklhllpSGilnpgvvnviGngvvvdpealleEieeleakgvelsk.e 93 
                      ++ +l+ SG + ++++ v+G+ v +  ++ll+E+e+l++  ve+++ +
       CCE27212.1 411 FHRRLFFSGHVGASAREVLGQTVAIIQHQLLQELERLDETDVEVVDgD 458
                      6678999********************************999887643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3766.20
//
Query:       CCE27213.1  [L=676]
Description: related to hsp70 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-06   27.0   0.0    8.1e-06   24.3   0.0    1.9  2  HSP70        Hsp70 protein
  ------ inclusion threshold ------
       0.01   16.3   0.2       0.42   11.0   0.0    2.4  2  FtsA         Cell division protein FtsA
        6.1    4.8   7.6        8.1    4.4   7.6    1.0  1  AF-4         AF-4 proto-oncoprotein


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.024   1.5e+02       1      21 [.      35      55 ..      35      68 .. 0.74
   2 !   24.3   0.0   1.4e-09   8.1e-06     131     336 ..     207     427 ..     155     444 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.024
                EEEEEEXSSEEEEEEEETTEE CS
       HSP70  1 viGiDLGttnsvvavmeggki 21
                ++G+D Gtt s va +   ++
  CCE27213.1 35 IVGVDFGTTFSGVAAVYTATP 55
                69*********9997655443 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 1.4e-09
                 SBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEE...EEEEEHHHHHHHHHHTCCSS....SCEEEEEEEEXSSXEEEEEEEEETT.EEEEEEEEEET.T CS
       HSP70 131 kkvtdavitvPaYfndaqRqatkdAgkiAGLnv...lRivNepTAaalaYGldkkd....kernvlvyDlGggtfdvSilelekG.vfevkaTagDt.h 220
                  +  + v+t+Pa + da ++ t  A++ AG+     +R+v ep Aaa+ Y l+          + +v D Gggt d    ++++   ++v   a+ t  
  CCE27213.1 207 STRVEFVLTCPAVWSDAAKHRTLLAAERAGMGPrgeIRMVSEPEAAAV-YTLKVMGaclaVGDHFVVCDAGGGTVDLIAYKIKSLhPLRVEESAVGTgG 304
                 444578*************************864448**********8.9**99998998788999***********9999997526999887766635 PP

                 XSHHHH.HHHHHHHHHHHHHHH..HSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTT.EEEEE...EEEHHHHHHHHHHHHHHTHHH CS
       HSP70 221 lGGedf.Dealvehlveefkkk..egidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedg.kdlse...klsRakfeelvedllertlep 312
                 l G  f   +  eh+++++ +    ++ + k k     lk   e +K+++ +++++ei++++  + +d+   l++    ++  ++ ++  ++++++ + 
  CCE27213.1 305 LCGSAFlNYRFEEHVRNRLGHArfDEMKTLKAKTWQMGLKYFEEFVKRNFDEEEHQEIHVPFPGLPDDEtAGLDSgflIMTAPQIRDIFVPVVQEVCDL 403
                 888877467899999999988722344444555556679999999*******************9987665555422258999**************** PP

                 HHHHHHHCTEEGGGCSEEEEESGG CS
       HSP70 313 vekalkdaklkkeeidevvlvGGs 336
                 v+  +   + +   ++ ++lvGG 
  CCE27213.1 404 VQGQVDRLRSQGGTVSGIILVGGF 427
                 **********************96 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.1e-05      0.42       1      36 [.      36      73 ..      36     105 .. 0.89
   2 ?    2.7   0.1     0.028   1.6e+02       1      25 [.     271     295 ..     271     311 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.1e-05
                EEEEE-SSSEEEEEEETTEEEEEEEES-..-HHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlrvigv..ggngitkd 36
                ++vD+G++ + va +    + ++++i++  ggngit+d
  CCE27213.1 36 VGVDFGTTFSGVAAVYTATPDDIEIIKTwpGGNGITSD 73
                68***************9******************99 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.028
                 EEEEE-SSSEEEEEEETTEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA   1 alvDiGagktdvavaedgalvhlrv 25 
                 ++ D G+g++d++ ++ ++l  lrv
  CCE27213.1 271 VVCDAGGGTVDLIAYKIKSLHPLRV 295
                 578*************988876555 PP

>> AF-4  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   7.6    0.0014       8.1     462     492 ..      90     120 ..      55     141 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0014
        AF-4 462 vesahsssaeSeSsSeSeSSSeSDSesEsss 492
                 ++   +    S+SsS S SSS S S s sss
  CCE27213.1  90 PARPVHAVPISSSSSSSSSSSSSSSPSPSSS 120
                 3333333444444444444444445555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 5017.54
//
Query:       CCE27214.1  [L=776]
Description: related to ser/thr protein kinase IME2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-55  188.0   0.0    2.9e-55  187.5   0.0    1.3  1  Pkinase          Protein kinase domain
      2e-30  105.9   0.0    8.1e-29  100.7   0.0    2.3  2  Pkinase_Tyr      Protein tyrosine kinase
     0.0019   17.2   0.0     0.0031   16.5   0.0    1.2  1  Haspin_kinase    Haspin like kinase domain
     0.0099   14.9   0.0      0.014   14.4   0.0    1.1  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
  ------ inclusion threshold ------
       0.32   10.3   1.0       0.55    9.5   1.0    1.3  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   0.0   8.2e-59   2.9e-55       1     264 []      22     350 ..      22     350 .. 0.85

  Alignments for each domain:
  == domain 1  score: 187.5 bits;  conditional E-value: 8.2e-59
                 EEEEEEEEEESSEEEEEEEETT.......TTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveke.......tgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee..kdelylvleyveggeladll 89 
                 +e+l+++G GsfG+V+ a+ ++       +g  vA+K +kk  ++ +     lrE+ +l+++  h ++v  +++f +  +++l++++ey+eg+ l +l+
  CCE27214.1  22 FEVLKEIGDGSFGSVVLARVRSaganiarRGSVVAIKSMKKTFDSLTPC-LELREVVFLRTIPnHAHLVPALDIFLDpySKKLHVCMEYMEGN-LYQLM 118
                 67899**********9998776111111156778999999987776554.789*********88*************9999**********66.88888 PP

                 H..HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET........................TTEEEE-SGTTSEESSSSCSBCTTTSCGG CS
     Pkinase  90 e..rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLide........................kgelKitDFGlakelessskltsfvgtse 162
                 +  ++++l+++ +k+i++qi+ gle++H+++++HrD+KpeNiL+++                        +  +K++DFGla+e +s+ ++t++v t++
  CCE27214.1 119 KarDHKCLDNSSVKSILYQIMLGLEHIHAHHFFHRDIKPENILVSTtshhevsnsfrrysslvtppptppTYTVKLADFGLARETHSKLPYTTYVSTRW 217
                 8777888**************************************7466666666666666655555554444************************** PP

                 GS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS........................... CS
     Pkinase 163 YlAPEvl.keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei........................... 233
                 Y+APEvl ++ eys++vD+W++G + +e+ t kp+f+   g +    e+dq+ ++++++g   + ++                                
  CCE27214.1 218 YRAPEVLlRAGEYSAPVDIWAVGAMAVEVATLKPLFP---GGN----EVDQVWRVCEVMGSPGNWYN----Kagarvgggdwregirlasklgfsfpkm 305
                 *******99****************************...333....67888888888884222222....123346888888889999999******* PP

                 ..............-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 ..............seeakdllkkllkkdpkkRltaeellqhpyl 264
                               + ++ ++++++l +dpk+R+t +++lqh+y+
  CCE27214.1 306 aphaidtflqapqwPASLSHFVTWCLMWDPKNRPTSSQALQHEYF 350
                 ********************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   2.2e-32   8.1e-29       2     201 ..      23     249 ..      22     267 .. 0.92
   2 ?    2.6   0.0     0.019        69     227     255 ..     316     344 ..     308     347 .. 0.84

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 2.2e-32
                  EEEEEEEEESSEEEEEEEEET...TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkg...ekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct..keepllivteyvkgGdLlkfLr 93 
                  e+ k++G G+fG+Vv +++++   +  ++   Va+K++k++ ++ +    l+e+ +++++ +h ++v  l + +   +++l + +ey++ G+L + ++
   CCE27214.1  23 EVLKEIGDGSFGSVVLARVRSagaNIARRGSVVAIKSMKKTFDSLTPCLELREVVFLRTIpNHAHLVPALDIFLdpYSKKLHVCMEYME-GNLYQLMK 119
                  56799***************988888889999*************999999***********************888899********7.8******* PP

                  HTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE........................TTEEEE-STTTHEETTTSSEEEETTSSTS CS
  Pkinase_Tyr  94 kkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse........................nkvvkisDfGLardiekddeyvkkeeakl 167
                  +++++ l+ +++ s+ +q+  G+e+++++++ Hrd+   N+L+s+                        + +vk++DfGLar+++++  y    ++ +
   CCE27214.1 120 ARDHKCLDNSSVKSILYQIMLGLEHIHAHHFFHRDIKPENILVSTtshhevsnsfrrysslvtppptppTYTVKLADFGLARETHSKLPY----TTYV 213
                  ********************************************999*********************999*************555555....5678 PP

                  GGGGS.-HHHH.HHSEEEHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 168 pvkWm.apEsl.kekkftsksDvWsfGvllwEiftl 201
                  + +W+ apE+l ++++++   D+W+ G +  E++tl
   CCE27214.1 214 STRWYrAPEVLlRAGEYSAPVDIWAVGAMAVEVATL 249
                  888987***9626788*****************985 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.019
                  BTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 227 pekcpeelyelmkkcweedpeeRptfsel 255
                    ++p++l ++++ c+  dp++Rpt s+ 
   CCE27214.1 316 APQWPASLSHFVTWCLMWDPKNRPTSSQA 344
                  45699*******************98775 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.6e-07    0.0031     201     257 ..     124     203 ..      57     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.6e-07
  Haspin_kinase 201 klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdkn........................lnvtlidlklsRle 257
                    k+ + + ++si++qi+  L    +  +F HRd++ +niLv  +                         +v l d+ l+R +
     CCE27214.1 124 KCLDNSSVKSILYQIMLGLEHIHA-HHFFHRDIKPENILVSTTshhevsnsfrrysslvtppptpptYTVKLADFGLARET 203
                    5667789************99865.6899*************99**********************99***********86 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.9e-06     0.014     275     321 ..     129     172 ..     114     204 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.9e-06
  Pox_ser-thr_kin 275 eyikfifLqiaLLyikiyelpdcenflhvDlkPdniLifds.keklii 321
                      + +k i+ qi L +  i      + f+h D+kP+niL+  + +++++ 
       CCE27214.1 129 SSVKSILYQIMLGLEHI----HAHHFFHRDIKPENILVSTTsHHEVSN 172
                      56888999998888888....5789************97653555555 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.0   0.00015      0.55     109     155 ..     120     166 ..     104     174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00015
         Kdo 109 lakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 +++++ l++++ + +l ++    + +h+ +  H+d+ + nil+ ++ 
  CCE27214.1 120 ARDHKCLDNSSVKSILYQIMLGLEHIHAHHFFHRDIKPENILVSTTS 166
                 445455899999999****************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5377.88
//
Query:       CCE27215.1  [L=380]
Description: uncharacterized protein CPUR_00687 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-21   75.4   4.1    3.8e-21   75.4   4.1    2.0  2  Stc1      Stc1 domain


Domain annotation for each model (and alignments):
>> Stc1  Stc1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   4.1   2.1e-25   3.8e-21       1      84 [.      20     101 ..      20     102 .. 0.97
   2 ?   -1.7   0.4      0.24   4.3e+03      10      41 ..     196     227 ..     190     237 .. 0.50

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 2.1e-25
                 E-SSS--EEETTTS-HHHHHTTTTEEEE-S-.......----TTTS-----EEE-SSS--EEESTTS-HHHHHS.SS---HHHH CS
        Stc1   1 kCkeckkkkplseFSkkqlkklekklaeekakvkkakskikCkectakqateleCsaCqktkpldeFsksqrrkpdaarCkdCv 84 
                 +Ck+++++kp ++FS++q++ le+++++ + +v++ +s+++C+e++a+  tel+C  Cq +kp  +Fsk++r++ ++++C++C+
  CCE27215.1  20 RCKVGGEWKPIQAFSTTQQRLLERQVSA-RGTVDAENSGMTCQEHSAGTLTELRCALCQLDKPYTDFSKTMRKS-EDSMCRRCT 101
                 8*************************88.799******************************************.9*******8 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.24
                 ETTTS-HHHHHTTTTEEEE-S-.......--- CS
        Stc1  10 plseFSkkqlkklekklaeekakvkkakskik 41 
                 ++++FS++  +  +++  ++ +++k+ +s i+
  CCE27215.1 196 QQQSFSESDAEAEDNNDFRKINHAKSSDSAIR 227
                 44556666655543222222333444444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       888  (0.0495287); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2580.88
//
Query:       CCE27216.1  [L=438]
Description: related to pyruvate dehydrogenase kinase isoform 2, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-76  253.8   0.0    8.8e-76  253.2   0.0    1.2  1  BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehy
    5.8e-13   49.3   0.0    1.1e-12   48.4   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.21   11.4   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.2   0.0   1.5e-79   8.8e-76       1     162 []      23     255 ..      23     255 .. 0.98

  Alignments for each domain:
  == domain 1  score: 253.2 bits;  conditional E-value: 1.5e-79
  BCDHK_Adom3   1 pvslrqlvqfgekpstgtllksaqflreelpirlAhrvkelenlPdglvenpsvkkvkdwYaqsfeellelpkpelee.................... 78 
                  +vslrq+vqfg+kpstgtl++++qfl eelpirlAhrv+el++lPdgl+e+psv kvkdwYaqsfee+++lp+p+l++                    
   CCE27216.1  23 GVSLRQMVQFGDKPSTGTLFRASQFLAEELPIRLAHRVQELDELPDGLNEMPSVMKVKDWYAQSFEEITQLPRPDLSKdvrnrlmrpakangrivqrl 120
                  69************************************************************************999999****************** PP

  BCDHK_Adom3  79 .....................................................nekftelLekikkrHddvvttlaqGvlelkekrkrkqidseiqsF 123
                                                                       n++f+e+L++ik+rHd+vvtt+aqG+le+k++r+r+qid +iqsF
   CCE27216.1 121 seatpnpsidegepsgwgglqnsngngkpktlarryfatvddtadwpaelqlyNQRFAETLHTIKRRHDGVVTTMAQGILEYKRRRQRMQIDGTIQSF 218
                  ************************************************************************************************** PP

  BCDHK_Adom3 124 LdrfymsRIgiRmLieqhiaLteqskskkepsdyvGiId 162
                  LdrfymsRIgiRmLi+qhiaLt+qs++ ++p +yvG+I+
   CCE27216.1 219 LDRFYMSRIGIRMLIGQHIALTDQSHH-RDP-TYVGVIC 255
                  ************************997.555.9*****9 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   1.9e-16   1.1e-12       3     109 ..     301     428 ..     299     430 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.9e-16
                 HHHHHHHHHHHHHHHHHH....HSTTTEE.........EEEEEEEETEEEEEEEESSSSSTTHHHTGTCS.TTCH............HCSTCHTSTSSS CS
   HATPase_c   3 ekrLrqiisnlvdNavkf....atkagei.........eveikaseddlvisveDnGiGipkedlkklfe.kfsq............ddstkrggggtG 75 
                 + +L +++ + ++N++++          +         +v +   ++d++i+v+D G Gip++ ++++ +  +++            +++ k    g+G
  CCE27216.1 301 PGHLSHMLFETLKNSLRAvvetH-----GmekqefpvtKVIVAEGKEDITIKVSDEGGGIPRSAIPLVWTyMYTTvdripnldpdfdKSDFKAPMAGFG 394
                 5789*************966541.....3233333444555554447*******************88887777788888898887667777779**** PP

                 HHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEE CS
   HATPase_c  76 lGlsivkklvelmgGeiwvesepgrGttftftlp 109
                 +Gl i++ +++ +gG+++++s +g Gt+++++l 
  CCE27216.1 395 YGLPISRLYARYFGGDLKLISMEGYGTDVYLHLN 428
                 *******************************985 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.6e-05      0.21       7      50 ..     308     360 ..     303     402 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.6e-05
  HATPase_c_3   7 laelvdNsldAdaen..........vkievnknrgktgeivieDdGkGmseeel 50 
                  l+e ++Nsl A  e+           k+ v + + ++ +i++ D+G G++++ +
   CCE27216.1 308 LFETLKNSLRAVVEThgmekqefpvTKVIVAEGK-EDITIKVSDEGGGIPRSAI 360
                  89**********************8788888875.689***********99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3219.57
//
Query:       CCE27217.1  [L=383]
Description: uncharacterized protein CPUR_00689 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0028   17.1   1.5     0.0054   16.2   1.5    1.5  1  NBP1            Fungal Nap binding protein NBP1
  ------ inclusion threshold ------
        0.1   12.2   2.2        1.7    8.2   1.1    2.3  2  Fzo_mitofusin   fzo-like conserved region
       0.27   10.6   3.2        1.6    8.1   0.9    2.3  2  DUF4349         Domain of unknown function (DUF4349)
       0.47   10.6   6.8       0.96    9.6   6.8    1.5  1  Tropomyosin_1   Tropomyosin like
       0.83    9.1   7.8        2.1    7.7   2.3    2.2  2  HMMR_N          Hyaluronan mediated motility receptor N-termi
        1.2    9.1   8.1       0.64   10.0   5.2    2.0  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
          3    8.2   7.8        2.9    8.2   5.4    2.1  2  OmpH            Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> NBP1  Fungal Nap binding protein NBP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.5   2.1e-06    0.0054     113     219 ..     214     326 ..     136     330 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.1e-06
        NBP1 113 mknasenlnallp..seelksreerkklkdrilrseaFkkkllelk..ydk..qmleqLrrgrssnkserrvslrnnnleeDqvvlLqkkikklesklk 205
                  k  +++l+a l+  +e++k+ e+++   +r ++ +  kk + e+   +d+  + +++L+ +++++++ +    +  +  + +++ Lq++i+ le++l+
  CCE27217.1 214 FKSRFSDLSASLQreREAEKQLEDDEPPPKRGMSDKQAKKVIAEMGklNDElsAVVNNLKARQEESEHIQGLLIERAERAAQRIIFLQNRITYLEEELQ 312
                 5777888888888766677777888888888888888888889986443322256789999999999888888999999******************** PP

        NBP1 206 dlekeLeitkkkLk 219
                 + + eL+ ++  Lk
  CCE27217.1 313 ENDGELQHLRICLK 326
                 *******9999887 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.039     1e+02      86     126 ..     133     175 ..     129     179 .. 0.76
   2 ?    8.2   1.1   0.00066       1.7      88     154 ..     247     313 ..     244     318 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.039
  Fzo_mitofusin  86 ltsancshqvqqelsstfarlcqqvdeteke..leeeikelek 126
                    +ts + +h + ++l++   rl ++  +++++  l +++++lek
     CCE27217.1 133 VTSRAARHDIARRLTQLARRLACDEPNSTNDvmLGNQLEQLEK 175
                    799******************8876666655224566666665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00066
  Fzo_mitofusin  88 sancshqvqqelsstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLek 154
                    s +  ++v  e+ +  ++l++ v++ ++  ee+ +     ie+ e++ ++   l+n+ ++le+eL++
     CCE27217.1 247 SDKQAKKVIAEMGKLNDELSAVVNNLKARQEESEHIQGLLIERAERAAQRIIFLQNRITYLEEELQE 313
                    5566788999**************9999877777777778*************************86 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.041     1e+02      25      67 ..      46      87 ..      33      88 .. 0.86
   2 ?    8.1   0.9   0.00063       1.6      94     143 ..     271     322 ..     261     339 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.041
     DUF4349 25 elveeagGyvesssersgtegdersasltlRvPaarldaflde 67
                 ++     ++ s+s ++++++++ s +l  R P+++ ++f+de
  CCE27217.1 46 GICSHCSSTINSRS-QNSRTSQPTSPRLLSRTPSDKGEEFVDE 87
                67778888889999.999**********************996 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00063
     DUF4349  94 Rlkaleasedrllall.ekak.svedlleiereLsevqaeieslegqlryLd 143
                  lka++++ + ++ ll e+a+  ++ ++ ++++++  ++e+ +  g+l+ L+
  CCE27217.1 271 NLKARQEESEHIQGLLiERAErAAQRIIFLQNRITYLEEELQENDGELQHLR 322
                 699*************9998846788**********************9996 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   6.8   0.00038      0.96      31     108 ..     245     330 ..     220     358 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00038
  Tropomyosin_1  31 lekeqeiksLtkknqqleeevekleeklkeakekaeesekkk.tnne.......altrkiqlLEeeleesdkkLkettekLretdv 108
                       +++ k+    + +l++e+  + ++lk  +e++e+ + +    +e        l+ +i  LEeel e+d +L+     L+ +++
     CCE27217.1 245 GMSDKQAKKVIAEMGKLNDELSAVVNNLKARQEESEHIQGLLiERAEraaqriiFLQNRITYLEEELQENDGELQHLRICLKAVEI 330
                    3445555555555555666666655555555555554443321223344455569*******************988777777666 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   2.3     0.016        40      73     124 ..     221     274 ..     184     291 .. 0.71
   2 ?    7.7   2.3   0.00084       2.1     218     289 ..     274     343 ..     270     373 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.016
      HMMR_N  73 ltkekkkqkeLEkeiRs..LvqergeqdkrlqaleeelkkveakLlaavrekts 124
                 l+++ ++ +e Ek++ +     +rg+ dk+ +++ +e+ k++  L+a+v + ++
  CCE27217.1 221 LSASLQREREAEKQLEDdePPPKRGMSDKQAKKVIAEMGKLNDELSAVVNNLKA 274
                 445555555555555431134689999999999999999999999999876444 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00084
      HMMR_N 218 ekieekseteklleyieelsnvseqlekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekc 289
                  ++ee ++++ ll  ie+ + +++++   + +i++lee l+e++ e+++L+  L++ e ++  + ++  ++c
  CCE27217.1 274 ARQEESEHIQGLL--IERAERAAQRIIFLQNRITYLEEELQENDGELQHLRICLKAVEIQMPPHPDKELQRC 343
                 5577777877776..5566666666666799************************98876655544444444 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.2   0.00025      0.64      14      79 ..     257     322 ..     247     342 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00025
  CENP-F_leu_zip  14 eserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalr 79 
                     e+ + +d L   v+nL++  e+se+ q  +i  aE + + +  l++ i  l+eel+e   +L++lr
      CCE27217.1 257 EMGKLNDELSAVVNNLKARQEESEHIQGLLIERAERAAQRIIFLQNRITYLEEELQENDGELQHLR 322
                     55667899********************************************************98 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.4    0.0011       2.9      28      86 ..     239     321 ..     215     332 .. 0.77
   2 ?   -1.0   0.0      0.78     2e+03      33      53 ..     338     358 ..     335     367 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0011
                 H............HHHHHHHHHHHHHHHHHHHHHHHHTTTS.........-HHHHHH....HHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  28 f............kklqaeleakekelqklqeelqkkakkle........keekeqe....lqkkeqelqqkqqqkaqelqkk 86 
                 +            kk  ae+ ++++el + +++l+++++++e        ++e++ +    lq++ + l++++q++ +elq  
  CCE27217.1 239 EpppkrgmsdkqaKKVIAEMGKLNDELSAVVNNLKARQEESEhiqgllieRAERAAQriifLQNRITYLEEELQENDGELQHL 321
                 55555555555559999999999999999999998777776359999977555555589************999999999965 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.78
                 HHHHHHHHHHHHHHHHHHHHT CS
        OmpH  33 aeleakekelqklqeelqkka 53 
                 +el++  + +++++++l++k 
  CCE27217.1 338 KELQRCIATFKTEYQALKRKR 358
                 455555555566666665433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1194  (0.066596); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 2892.08
//
Query:       CCE27218.1  [L=228]
Description: uncharacterized protein CPUR_00690 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1886.63
//
Query:       CCE27219.1  [L=567]
Description: probable sphingosine-1-phosphate lyase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-18   65.8   0.0    3.9e-18   65.3   0.0    1.3  1  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
    0.00013   21.4   0.0    0.00021   20.7   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    0.00034   19.7   0.0    0.00061   18.8   0.0    1.4  1  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   6.5e-22   3.9e-18      34     372 ..     138     459 ..      80     462 .. 0.84

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 6.5e-22
                    S--TTSTTBH.CSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT-EEEEESSHHHHHHHHHHHHHHHHHH CS
  Pyridoxal_deC  34 vttwhspefh.kllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeeflekegggvlqvgssestllallAartkvik 128
                     t w++ ++  + +    +li+l ++  ++    n +  +  P + ++e  v+ ++ +l+++p       + gv + g++es+l+a l ar+k+  
     CCE27219.1 138 HTRWEDGYVSgAVYHGEDELIALQTEAFGKFTVANPIHPDVFPGVRKMEAEVVSMVLDLFHAP----P-GAAGVSTAGGTESILMACLSARQKAYA 228
                    566666666524555566799999999999999999999************************....3.389*******************99877 PP

                    HHHHHTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-EEEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHH CS
  Pyridoxal_deC 129 emkekgkelkeaeildklvlytsdqahssvekaalvlgvklrvipldengklrgaalekaieedkekGlipffvvatlGttvlgaFddlkelgdic 224
                    e    ++e           +   + ah++ +ka+ ++++k+ ++ +      +  + ++    ++++  +++ v   +     g  dd++ l ++ 
     CCE27219.1 229 ERGVTEPE-----------MIMPSTAHTAFRKAGDYFKIKVHLVDCPA--PNYQVDIRRVARLVNAN--TVLLV-GSAPNFPHGIIDDISALSKLA 308
                    65555544...........566666*********************97..35788888888888888..44333.34455578999********** PP

                    HHCT-EEEEE-TTGGGGGGSGGGGG.......GGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHHHH-EEECCCT.TTTTTSEECCCGSSS CS
  Pyridoxal_deC 225 ekydlwlHvDAAyaGsaficpeirh.......llkgieradSitvnphKlllvlldcsalivkdkealqqalqleaeYLehedsdvaadlgtkaip 313
                     + +l+lHvD   +   f+ p   +       +++++  + Si++  hK++ ++ + s+++++ +e  q +  +++++ +         +    i 
     CCE27219.1 309 LRKKLPLHVDCCLGS--FLVPCLEKagfetepFDFRLKGVTSISCDTHKYGFAPKGNSTVLYRTSELRQYQYYVCPDWAG-------GVYASPGIA 395
                    *************99..777765555588888**********************************************99.......6678889** PP

                    SSG.HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT....EEECSTTBSSEEEE CS
  Pyridoxal_deC 314 lsr.rvrilklwfvlralGveglqnqirksvelakyleklirkder....feivaevelglVcF 372
                     sr    i+  w  l ++G  g+     k v   k++++ i+  ++     ei+ ++ +  ++F
     CCE27219.1 396 GSRpGALIAGCWASLMTVGESGYIDACAKIVGATKKMADAIQTSGSlsgeLEIMGKPLVSVIAF 459
                    ***999***********************************99764222256777888877777 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.6e-08   0.00021      41     146 ..     205     320 ..     200     323 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.6e-08
                      EEEESSHHHHHHHH.HHH.......TTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTE...EEEEEB-GGGB CS
  DegT_DnrJ_EryC1  41 aiavssGtaAlhla.Lra.......lgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitert...kaIlpVhlyGq 123
                       ++++ Gt+++++a L+a        gv  + e I+ps+  +a  +a  +   k+ +vD  +  y++d  +++++++ +t    +  p    G 
       CCE27219.1 205 GVSTAGGTESILMAcLSArqkayaeRGV-TEPEMIMPSTAHTAFRKAGDYFKIKVHLVDCPAPNYQVDIRRVARLVNANTvllVGSAPNFPHGI 297
                      5788889988777635556544332333.589************************************************43322234445699 PP

                      ---HHHHHHHHHHCT-EEEEE-T CS
  DegT_DnrJ_EryC1 124 vadmdalkaiaakhglkvieDaA 146
                      + d++al ++a +++l++  D++
       CCE27219.1 298 IDDISALSKLALRKKLPLHVDCC 320
                      99********************9 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     1e-07   0.00061      50     268 ..     191     413 ..     182     482 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1e-07
                  HHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGG.THHHHHHHHHHTEEEEEEE.BETTSCBEGGGHHHH--TTEEEEEE CS
  Aminotran_5  50 ekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhan.lvpwqelakrtgakvkvip.ldeegeldldelekllnektklvai 145
                  + v +l++a+     + t G+te+i ++ ls++++  +++ +   e+   ++ + + +++ +  ++kv+ +    ++ ++d+ +++ l+n +t l+  
   CCE27219.1 191 SMVLDLFHAPPGAAGVSTAGGTESILMACLSARQKAYAERGVTEPEMIMPSTaHTAFRKAGDYFKIKVHLVDcPAPNYQVDIRRVARLVNANTVLLVG 288
                  5677899999999999****************9885555544444444433213355699999999999996256899******************** PP

                  ESBETTTTEB--HHHHHHHHHHTT-EEEEE-T...........TTTTTS---HHHHTESEEEEETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSE CS
  Aminotran_5 146 thvsnvtGtiqpveeigklakkkgalvlvDaa...........qavghipidvkklgvDflafsghK.llgPtGiGvlyvrkellekleplllggemv 231
                  ++ +  +G+i+++ ++ kla +k+  ++vD +           +++   p+d++  gv  ++  +hK  ++P+G + +  r++ l ++       ++ 
   CCE27219.1 289 SAPNFPHGIIDDISALSKLALRKKLPLHVDCClgsflvpclekAGFETEPFDFRLKGVTSISCDTHKyGFAPKGNSTVLYRTSELRQY-------QYY 379
                  ******************************8733333333333456677777777777777777777667777777777777666666.......455 PP

                  EEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHH CS
  Aminotran_5 232 eevsleettfaeapskfeaGTpnvagiiglgaaleyl 268
                   +++  + ++a++     aG+ + a i g+ a l  +
   CCE27219.1 380 VCPDWAGGVYASPGI---AGSRPGALIAGCWASLMTV 413
                  555556666555555...6666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4582.07
//
Query:       CCE27220.1  [L=133]
Description: uncharacterized protein CPUR_00692 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1177.68
//
Query:       CCE27221.1  [L=313]
Description: related to alpha-1,2-galactosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-66  223.9   0.2      3e-66  223.6   0.2    1.1  1  Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.18   11.5   0.0    1.4  1  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.6   0.2   3.3e-70     3e-66       2     236 ..      65     291 ..      64     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: 223.6 bits;  conditional E-value: 3.3e-70
  Glyco_transf_34   2 epeivlllvsnekkcenssgdhelllkvikNrvdYaekhgyeifykkvsallaeemnsvWaklpairaamkkyPeaewiWwlDqdAlimnmdls 95 
                      +p +vl++v+++ + +     +++l ++ +Nr +Ya +hgy+ ++ +v++++ ++++ +Wak+ a+r+a+ kyP+ ++iW+l qdA im+++ s
       CCE27221.1  65 NPSVVLVTVVDSSEAN-----AAYLMTIKENREKYAARHGYQAMVMDVHDYDTQGAPRSWAKIFAMRHALSKYPDCQFIWYLGQDAYIMDPSKS 153
                      789********99986.....77*********************************************************************** PP

  Glyco_transf_34  96 leehvlkperLeelllkntpvvplrryketnlvedgedvlviisqdwnglnagsflirnsewsklllDlwadpllrekkkavtesdeqsaleyl 189
                      l+++v +  +Le+l++k+ pvv+++++++t+++  g+++++i  qd++gl   s +irn ew+k+++++w+dp++r+++++   ++e++ale++
       CCE27221.1 154 LDDQVTNARKLESLMIKDYPVVQPDSIIKTFSHLRGDNIDLIVCQDKEGLVHQSVVIRNGEWAKFFIETWFDPMYRNYNFQ---KAERHALEHI 244
                      *********************************************************************************...********** PP

  Glyco_transf_34 190 lekhpevlskvglveqkvinsydegekelgykegdlvvhfagCkvan 236
                      +++hp+vlsk++lv+q++++sy++++   +y+egd+vv fagC + +
       CCE27221.1 245 VQWHPTVLSKLALVPQRTFASYSKSSYGDQYQEGDFVVMFAGCVQTG 291
                      *******************************************8766 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     2e-05      0.18      27      78 ..      27      77 ..       5      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2e-05
     DUF4131 27 rprrrvllllllllllallgfalrapqpnandlsqllesgqeviveGvvasl 78
                r++r   +++++lll+++l+f++  ++p   + +     + +v+++ vv+s 
  CCE27221.1 27 RRSRLKNIAIGALLLFGFLYFLFGGRRPDPYHEHVPSG-NPSVVLVTVVDSS 77
                778888899******************99976665555.8888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2194.21
//
Query:       CCE27222.1  [L=336]
Description: uncharacterized protein CPUR_00694 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-09   36.6   5.1      2e-08   34.2   1.5    2.3  2  RINGv         RING-variant domain
     0.0062   16.6   3.5        2.3    8.4   0.0    2.3  2  PHD_4         PHD-finger
  ------ inclusion threshold ------
      0.057   13.1   0.5       0.13   12.0   0.5    1.5  1  Rubredoxin_2  Rubredoxin metal binding domain
        0.2   12.0   5.3       0.35   11.3   2.0    2.2  2  zf-RING_2     Ring finger domain
       0.55   10.2   7.0       0.13   12.2   2.8    1.9  2  PHD           PHD-finger
        3.1    7.7   8.5        1.4    8.9   0.2    2.6  3  Colicin_V     Colicin V production protein


Domain annotation for each model (and alignments):
>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.028        82       1       9 [.      77      85 ..      77      92 .. 0.84
   2 !   34.2   1.5   6.7e-12     2e-08      12      48 .]     113     155 ..     106     155 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.028
                ETTTTEE-S CS
       RINGv  1 CriCleeee 9 
                CriCle+e+
  CCE27222.1 77 CRICLETEH 85
                *****9975 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 6.7e-12
                 S..--B-SS--STCCCSB-HHHHHHHHHH.TCT-SB...-TTT CS
       RINGv  12 e..plispCkCrGslklvHesClekWlde.keantq...CeiC 48 
                 e   l spC+C+Gs k+vHe Cl+ W  +  +a+++   C  C
  CCE27222.1 113 ElgRLLSPCQCKGSSKYVHEGCLNAWRLTaPTATRHfwqCPTC 155
                 23589*********************88753333334558888 PP

>> PHD_4  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00078       2.3      19      43 ..      63      87 ..      50      98 .. 0.78
   2 !    8.2   1.2   0.00088       2.6      30      67 ..     120     155 ..     103     156 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00078
       PHD_4 19 vveeesetpsslmeCsvCyeivHpe 43
                 + ++++   +  +C +C e+ Hp+
  CCE27222.1 63 SQPQPNSRRYKPRTCRICLETEHPK 87
                3356677788899***********7 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00088
       PHD_4  30 lmeCsvCyeivHpeClkekegegvvnedlpnsWeCpkC 67 
                   +C+  ++ vH  Cl+      ++       W+Cp+C
  CCE27222.1 120 PCQCKGSSKYVHEGCLNA--WRLTAPTATRHFWQCPTC 155
                 5679999999******88..556777888999****** PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   4.3e-05      0.13      10      21 ..     145     156 ..     144     157 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.3e-05
  Rubredoxin_2  10 sakwfGrCpsCg 21 
                   + ++f++Cp C+
    CCE27222.1 145 ATRHFWQCPTCK 156
                   689********7 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.12   3.5e+02       2       8 ..      76      82 ..      75      90 .. 0.78
   2 ?   11.3   2.0   0.00012      0.35      19      44 .]     121     156 ..     107     156 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.12
   zf-RING_2  2 eCpICle 8 
                +C ICle
  CCE27222.1 76 TCRICLE 82
                7****95 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00012
   zf-RING_2  19 lpCgH..v.fhreClerwlrssst.......CPlCr 44 
                 ++C+      h+ Cl+ w  + +t       CP+C+
  CCE27222.1 121 CQCKGssKyVHEGCLNAWRLTAPTatrhfwqCPTCK 156
                 3465233337********55555556999******7 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.68     2e+03       2       9 ..      77      83 ..      76      88 .. 0.62
   2 ?   12.2   2.8   4.3e-05      0.13      17      51 ..     122     157 ..     116     158 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.68
                BTTTTSTT CS
         PHD  2 CavCkkks 9 
                C++C + +
  CCE27222.1 77 CRICLE-T 83
                888877.3 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.3e-05
                 EETTTSCEEETTTSSSTHSHHSHHSS.TBSSTTTHT CS
         PHD  17 qCdgCkrwfHqkClkppleseekpeg.ewlCekCke 51 
                 qC+g ++ +H  Cl+    +++  ++  w+C++Ck 
  CCE27222.1 122 QCKGSSKYVHEGCLNAWRLTAPTATRhFWQCPTCKF 157
                 8999***********9887777776679******96 PP

>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2   0.00047       1.4      52      91 ..     168     207 ..     142     217 .. 0.76
   2 ?   -1.4   0.1      0.69     2e+03      79     104 ..     249     273 ..     238     279 .. 0.67
   3 ?    2.7   1.3     0.039   1.2e+02      58      92 ..     287     321 ..     271     326 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00047
   Colicin_V  52 lilspalaaiiaflllfllvllivsllgallsklvsktgl 91 
                   ls+++a+i+  +++f+++l+i+++++  + +l   ++ 
  CCE27222.1 168 TKLSSRWAQIALTVVVFIVSLFILGFIADPILDLWFDPVG 207
                 56799********************998766665555555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.69
   Colicin_V  79 gallsklvsktglglldrllGaifGl 104
                 g  l++++     ++++  +G++fG 
  CCE27222.1 249 G-ALKSFIAMGPWHWINLRAGGLFGS 273
                 3.344446667778888888888886 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.039
   Colicin_V  58 laaiiaflllfllvllivsllgallsklvsktglg 92 
                 +  ++  + +f++v+++++++ a+  ++++++  +
  CCE27222.1 287 FNLLFVAIGVFTFVMALWRFVKAMSARVLTQVSNK 321
                 5556667889**************99988877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1095  (0.0610742); expected 358.6 (0.02)
Passed bias filter:                      694  (0.0387082); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2606.58
//
Query:       CCE27223.1  [L=276]
Description: probable 20S proteasome subunit Y7 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-56  188.9   0.1    2.6e-33  115.1   0.0    2.2  2  Proteasome      Proteasome subunit
    1.2e-10   40.9   0.3    3.1e-10   39.5   0.0    1.9  2  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   2.8e-37   2.6e-33       1     116 [.      28     142 ..      28     146 .. 0.95
   2 !   71.7   0.0   5.9e-24   5.3e-20     113     190 .]     165     240 ..     161     240 .. 0.94

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 2.8e-37
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHH.HHHHHHSSGTCHHHHHHHHHHHHHHHHHH CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaq.lyrlrygrpipverlvarvaaklqaytqr 98 
                 v++G t++Gik+++g+vla++k+++  s l+++stv+Ki+ i+++ig++++G+ +D+r+lv+rar+  +  y+  y++ +p+++lv+ va+ +q+ tq+
  CCE27223.1  28 VNQGITALGIKATNGIVLATEKKSS--SPLADQSTVSKISNITPNIGAVYSGMGPDYRVLVDRARKVSHtGYKRIYNEYPPTRILVQDVARVMQEATQS 124
                 689**********************..**************************************9777258899************************ PP

                 CTTTTTSEEEEEEEEETT CS
  Proteasome  99 sgrrpfgvslliagvdee 116
                 +g+rp+gvs+liag+d+ 
  CCE27223.1 125 AGVRPYGVSMLIAGWDDG 142
                 ****************64 PP

  == domain 2  score: 71.7 bits;  conditional E-value: 5.9e-24
                 EETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 113 vdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                    +ggp Lyq+dp+Gsy+ +k a+aiG+ ++ akt+lek+y+e+l+le+a+++a+ +lk  +e++ ++g+ ie++++
  CCE27223.1 165 GIHKGGPMLYQVDPTGSYFPWK-ATAIGKSATKAKTFLEKRYSEELELEDAIHIALLTLKDNIEGE-MNGDSIEIGIV 240
                 445899***************8.*****99999*******************************77.********997 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   3.5e-14   3.1e-10       1      23 []       5      27 ..       5      27 .. 0.98
   2 ?   -1.8   0.1      0.29   2.6e+03      14      18 ..     173     177 ..     173     177 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 3.5e-14
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    Y +slttFSP+G+L Q+EYA++A
      CCE27223.1  5 YSFSLTTFSPSGKLVQIEYALNA 27
                    99*******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.29
  Proteasome_A_N  14 LfQVE 18 
                     L+QV+
      CCE27223.1 173 LYQVD 177
                     8***7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2248.74
//
Query:       CCE27224.1  [L=320]
Description: uncharacterized protein CPUR_00696 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-08   32.7   2.8      0.061   14.0   1.4    5.5  5  RCC1      Regulator of chromosome condensation (RCC1) repeat
    1.1e-07   31.4   4.2     0.0011   18.7   0.3    3.0  3  RCC1_2    Regulator of chromosome condensation (RCC1) repeat
  ------ inclusion threshold ------
      0.028   14.1   0.0      0.048   13.4   0.0    1.3  1  Hira      TUP1-like enhancer of split


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.011        64       4      29 ..       5      30 ..       4      41 .. 0.82
   2 ?    1.6   0.0     0.075   4.5e+02      24      49 ..     181     204 ..     152     205 .. 0.73
   3 ?    3.6   0.0     0.017     1e+02       1      10 [.     208     217 ..     208     224 .. 0.86
   4 ?    3.1   0.0     0.025   1.5e+02      36      50 .]     246     260 ..     231     260 .. 0.83
   5 !   14.0   1.4     1e-05     0.061       3      50 .]     265     316 ..     263     316 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.011
                EEEEE--GGGTTSSSS---EEEEEE- CS
        RCC1  4 VysWGrndyGqLGlgttesvlvPtkv 29
                +y+ G+n ++qL  g + s++ P  v
  CCE27224.1  5 LYAAGFNAWNQLYFGEDSSCSDPEDV 30
                8***********99999888888776 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.075
                 EEEEE-GGGTTS-EEEEEEETTEEEE CS
        RCC1  24 lvPtkveglsgnrvvkvacGddhtva 49 
                 +vP ++++  g+++++v++ ++  +a
  CCE27224.1 181 PVPDLMSL--GDPIKHVSASGYVLAA 204
                 55555555..55*******9987776 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.017
                 TTEEEEEE-- CS
        RCC1   1 dGrVysWGrn 10 
                 +G+Vy WGr 
  CCE27224.1 208 SGSVYIWGRK 217
                 59******85 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.025
                 -EEEEEEETTEEEEE CS
        RCC1  36 rvvkvacGddhtval 50 
                 +v++ a Gd+h +al
  CCE27224.1 246 DVQDFALGDSHAIAL 260
                 89**********997 PP

  == domain 5  score: 14.0 bits;  conditional E-value: 1e-05
                 EEEEEE--GGGTTSSSS-....--EEEEEE-GGGTTS.-EEEEEEETTEEEEE CS
        RCC1   3 rVysWGrndyGqLGlgtt....esvlvPtkveglsgn.rvvkvacGddhtval 50 
                 +Vy  G n +GqLG g+     +++++   + ++  n +vv va+G + ++ +
  CCE27224.1 265 DVYVIGGNRNGQLGVGQCrdflVREWTHINLGLPA-NcHVVGVAAGPRSSFII 316
                 69*************99956554444444444444.45999999999888865 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   9.3e-06     0.055       1      25 [.     192     216 ..     192     224 .. 0.91
   2 !   18.7   0.3   1.9e-07    0.0011       4      30 .]     250     276 ..     247     276 .. 0.92
   3 ?   -2.4   0.0      0.78   4.6e+03       1      15 [.     303     317 ..     303     318 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.3e-06
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGs 25 
                 +k+vsa +y   aLte+G V+ WG+
  CCE27224.1 192 IKHVSASGYVLAALTESGSVYIWGR 216
                 788999999999************6 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.9e-07
      RCC1_2   4 vsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                  + Gd+H++aLt+d +V+  G N +GQ
  CCE27224.1 250 FALGDSHAIALTTDCDVYVIGGNRNGQ 276
                 578***********************9 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.78
      RCC1_2   1 VksvsaGdyHscaLt 15 
                 V+ v+aG + s+++t
  CCE27224.1 303 VVGVAAGPRSSFIIT 317
                 6779***88888887 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     8e-06     0.048       8      37 ..     186     215 ..     182     230 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8e-06
        Hira   8 lvlespasfLessgsyLlavtsvgllyvWn 37 
                 + l++p+ ++++sg +L+a+t++g++y+W 
  CCE27224.1 186 MSLGDPIKHVSASGYVLAALTESGSVYIWG 215
                 689**************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2388.67
//
Query:       CCE27225.1  [L=1417]
Description: related to Dcl-2 dicer RNA helicase/RNAseIII CAF [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-39  133.6   0.0    3.1e-20   72.8   0.0    2.7  2  Ribonuclease_3   Ribonuclease III domain
    5.4e-24   84.8   0.0    6.8e-13   48.9   0.0    3.5  3  Ribonucleas_3_3  Ribonuclease-III-like
    2.4e-23   82.1   0.0    5.4e-23   81.0   0.0    1.7  1  Dicer_dimer      Dicer dimerisation domain
    1.8e-16   60.4   0.1    3.1e-16   59.6   0.1    1.4  1  DEAD             DEAD/DEAH box helicase
      2e-16   60.3   0.0    4.6e-16   59.1   0.0    1.7  1  Helicase_C       Helicase conserved C-terminal domain
    4.7e-14   52.8   0.0    8.8e-14   51.9   0.0    1.4  1  ResIII           Type III restriction enzyme, res subunit
    0.00079   19.1   0.0     0.0065   16.1   0.0    2.2  2  DEAD_2           DEAD_2


Domain annotation for each model (and alignments):
>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   1.2e-23   3.1e-20       1     105 []     975    1082 ..     975    1082 .. 0.89
   2 !   58.2   0.0   4.2e-19   1.1e-15       1     105 []    1159    1303 ..    1159    1303 .. 0.74

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 1.2e-23
                      HHHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHHHCTTCHCCHCHH..............HHCCSTTCHC......TSH CS
  Ribonuclease_3    1 erLeflGDavlklaittylfetypdahegrlsklrsklvsnenlarlakklglpkflrasefdpprnwlppgyklsddekeddd......adk 87  
                      erLeflGD+vlk+++  ++   +pd+ eg+ls+ + ++vsn  l+r+a + gl +f+ ++ f+ +++  + +   +d+e+ +++      ++k
      CCE27225.1  975 ERLEFLGDSVLKYLAAIQVSAIQPDWPEGYLSFYKDRIVSNSRLSRAAIDNGLARFILTKTFTGHKWRPKLV---GDSESGSKKgpprkmSTK 1064
                      8******************9999******************************************9998874...444444333444555*** PP

                      HHHHHHHHHHHHHHHHCT CS
  Ribonuclease_3   88 vladvvEAliGaiyldsg 105 
                      +ladv EAliGa yld+g
      CCE27225.1 1065 TLADVSEALIGASYLDGG 1082
                      ***************987 PP

  == domain 2  score: 58.2 bits;  conditional E-value: 4.2e-19
                      HHHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHH.......................HCTTCHCCHCHH.......... CS
  Ribonuclease_3    1 erLeflGDavlklaittylfetypdahegrlsklrsklvsnenlarla.......................kklglpkflrasefdpprnwlp 70  
                      e LeflGDa+l+++i++ l++  p + + r++ l++++v+ ++la+l+                         l l++f+r+s+  + ++   
      CCE27225.1 1159 EHLEFLGDAILDFVIVRKLYSYRPPLPHYRMHILKTAMVNGDFLAFLClhhsqaqtekvvtadlevteekrTPLALWNFMRHSSEPIGVEQAA 1251
                      68*******************8899***********************888777777777777777766644566666666433333222222 PP

                      ...........HHCCSTTCHC....................TSHHHHHHHHHHHHHHHHHCT CS
  Ribonuclease_3   71 pgy.......klsddekeddd....................adkvladvvEAliGaiyldsg 105 
                       ++       +         +                    a+k+++dv+EAliGa+++dsg
      CCE27225.1 1252 -LRrrfdalhT---------EvltemaqgeyypwdliarmqAQKFYSDVFEALIGAMWVDSG 1303
                      .2245544430.........144555666677777888888******************997 PP

>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   2.7e-16   6.8e-13      19     123 ..     971    1093 ..     955    1097 .. 0.83
   2 !   24.2   0.0   1.2e-08     3e-05       2      63 ..    1137    1200 ..    1136    1229 .. 0.78
   3 !    7.7   0.0    0.0015       3.9      91     115 ..    1282    1306 ..    1208    1316 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2.7e-16
  Ribonucleas_3_3   19 kghNerLefLGdavLk.lsvseyllekaekdegeltklraslvseeslaeiAkelgLgkvlrl................rkgeee.tegsgr 92  
                         ++erLefLGd+vLk l+ +++   +++ +eg l+ +++ +vs+ +l++ A++ gL ++++                 + g+++ +  +  
       CCE27225.1  971 PVNYERLEFLGDSVLKyLAAIQVSAIQPDWPEGYLSFYKDRIVSNSRLSRAAIDNGLARFILTktftghkwrpklvgdsESGSKKgPPRKMS 1062
                       3589************44567777889999*******************************9999999999999987653333333555666 PP

  Ribonucleas_3_3   93 ekvladaleAliGAiyldkgaevaqefveek 123 
                       +k lad+ eAliGA yld+g+++aq+ +   
       CCE27225.1 1063 TKTLADVSEALIGASYLDGGIAKAQACITMF 1093
                       77***********************999765 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.2e-08
  Ribonucleas_3_3    2 eelleqaltHkSf.angrkghNerLefLGdavLklsvseyllek.aekdegeltklraslvsee 63  
                       ++ll++a+tH S   n  ++++e LefLGda+L++++++ l+++ +  ++ ++  l++++v+ +
       CCE27225.1 1137 KSLLLEAMTHPSClFNHDTRSYEHLEFLGDAILDFVIVRKLYSYrPPLPHYRMHILKTAMVNGD 1200
                       689*********7444556889************998888776624446666666666666655 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0015
  Ribonucleas_3_3   91 grekvladaleAliGAiyldkgaev 115 
                       + +k  +d++eAliGA+ +d+g  +
       CCE27225.1 1282 QAQKFYSDVFEALIGAMWVDSGSPE 1306
                       5677899*************99754 PP

>> Dicer_dimer  Dicer dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   2.1e-26   5.4e-23       1      91 [.     586     679 ..     586     680 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 2.1e-26
  Dicer_dimer   1 aislLnrycatlpsdeytdlrpeyevkevedkergkfqaevtLPsnsp..lrkieg.epmstkklAkrsaAfeackeLhkaglLddhLlPlske 91 
                  a+s+L+++c +l+  e++d+rp+y+++++e+++ + ++a+v+LPs +p  lr i+g   + ++k+A ++aAf+a+ +L++agl++dhLlP + e
   CCE27225.1 586 AKSHLEHFCRVLSVGEFVDSRPDYIIHRHEESAPPTLSATVLLPSFVPvrLRVISGkLRWLSEKNATKEAAFQAYCALYEAGLVNDHLLPFRYE 679
                  789**************************999****************77799***999*******************************9866 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.1   1.2e-19   3.1e-16       2     170 ..      48     213 ..      47     221 .. 0.76

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.2e-19
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH....HT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl....dn 96 
                 ++Q e++++ + +++ +v ++TGsGKT ++++ + +++ +   ++++ + +++Pt +L+ q+++ +k  +  +++++l  +g+++ +   +++     +
  CCE27225.1  48 AYQLEMLDQSM-KQNAIVVMDTGSGKTHVAVLRIKAELQS--CDPKKIIWFLAPTVALCSQQYEVIKLQIPVVSMKLL--TGQENVETWSANIwdiiLR 141
                 57888888888.67*********************99965..888888889***************999997665554..5554444444444432247 PP

                 TCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        DEAD  97 gvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgk.lqrqvivlSATlp 170
                 +v+ivv+t + l+d l    ++++++ ++V+DEa++ + +  g +   +  ++q     +  +  +  ++ ++AT++
  CCE27225.1 142 DVRIVVSTYQVLLDALCHSFVKMERLALIVFDEAHNCSGKhpGSKAMTDFYHRQK---ASGLPvPS--ILGITATPS 213
                 7*************88667788****************99655555555555555...23334344..9999*9997 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   1.8e-19   4.6e-16      50     110 ..     459     518 ..     393     519 .. 0.68

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 1.8e-19
                 STHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSST CS
  Helicase_C  50 lpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRa 110
                  p+++ + +l++f++g++++Liat+v+e+Gid+p +n+Vi fd p +++ ++qr+GR+ R+
  CCE27225.1 459 PPNDSSNNALQDFRSGKINILIATSVLEEGIDVPACNMVICFDHPSTPKAFVQRRGRA-RM 518
                 45566669*************************************************8.65 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   3.5e-17   8.8e-14      18     170 ..      53     213 ..      44     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 3.5e-17
                 .....TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.............-SEEEE CS
      ResIII  18 klkskrdkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka......kekdstnkkilvt 109
                  l++  +++++++m TG+GKT va +++ ++l++  +++ + fl+p+ +l++q +e +k  ++      +k ++g+++ +        +   + +i+v+
  CCE27225.1  53 MLDQSMKQNAIVVMDTGSGKTHVAvLRIKAELQSCDPKKIIWFLAPTVALCSQQYEVIKLQIPVV---SMKLLTGQENVEtwsaniWDIILRDVRIVVS 148
                 4444557899**************788888888888888999********************998...566666666666666666677899******* PP

                 EHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T........TTHH.HHHT---SEEEEEESS-S CS
      ResIII 110 tiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk........swre.ilekfkeavllglTATpe 170
                 t+q l  ++      +   + +r  +i++DEaH+ ++k+        ++ +  +  ++   +lg+TATp 
  CCE27225.1 149 TYQVLLDAL-----CHSFVKMERLALIVFDEAHNCSGKHpgskamtdFYHRqKASGLPVPSILGITATPS 213
                 *********.....55666666666************84434433333333123444559********96 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.5e-06    0.0065     119     159 ..     140     178 ..     136     186 .. 0.88
   2 ?   -0.5   0.0      0.31   7.9e+02      85     114 ..     543     572 ..     512     579 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.5e-06
                 HCCTSEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCCCH CS
      DEAD_2 119 ledadiiilpYqyLldekireslkgislknsivilDEAhNi 159
                 l d+ i++  Yq+Lld+ + + +k +  +   +++DEAhN 
  CCE27225.1 140 LRDVRIVVSTYQVLLDALCHSFVK-M-ERLALIVFDEAHNC 178
                 56889******************9.4.6778999******6 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.31
                 HHHHHHHHC---CHHHHHHHHHCT--HHHH CS
      DEAD_2  85 klkkllleevvdiedlvelgeklklCPYyl 114
                 ++k   +++  +i +l +l e+ ++CP + 
  CCE27225.1 543 DMKAVYQDTQREIMQLRQLEESEETCPTFF 572
                 336777888889999999999*****9664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.83u 0.26s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 9835.69
//
Query:       CCE27226.1  [L=173]
Description: related to M.pneumoniae uridine kinase udk, partial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-05   23.2   0.0    6.6e-05   22.8   0.0    1.2  1  CPT             Chloramphenicol phosphotransferase-like prote
    6.5e-05   23.5   0.0    0.00013   22.5   0.0    1.5  1  AAA_18          AAA domain
     0.0025   18.1   0.0      0.004   17.4   0.0    1.3  1  AAA_28          AAA domain
     0.0032   17.7   0.0     0.0035   17.6   0.0    1.3  1  AAA_22          AAA domain
     0.0058   17.0   0.0     0.0087   16.5   0.0    1.3  1  AAA_16          AAA ATPase domain
     0.0075   16.0   0.0      0.013   15.2   0.0    1.4  1  PRK             Phosphoribulokinase / Uridine kinase family
  ------ inclusion threshold ------
       0.12   12.1   0.1        1.2    8.8   0.0    2.0  2  Cytidylate_kin  Cytidylate kinase
       0.14   11.9   0.0       0.16   11.6   0.0    1.2  1  AAA_24          AAA domain
       0.16   12.5   0.0       0.27   11.8   0.0    1.5  1  ABC_tran        ABC transporter
       0.16   12.1   0.0        0.2   11.8   0.0    1.5  1  AAA_33          AAA domain
       0.27   10.4   0.0       0.36   10.0   0.0    1.2  1  NB-ARC          NB-ARC domain


Domain annotation for each model (and alignments):
>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0     4e-08   6.6e-05       3      39 ..      10      45 ..       8      79 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 4e-08
                EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH CS
         CPT  3 iilLnGgsssGKsslaralqevldepwlhlgvDafve 39
                ii + G sssGK++lar l+++++++++  + D f +
  CCE27226.1 10 IIAISGCSSSGKTTLARLLRDIFPNTFILHQ-DDFYK 45
                8999***********************8555.55555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     8e-08   0.00013       1     113 [.      11     170 ..      11     172 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 8e-08
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe.......aldeskrldedkldklldaleenss....................... 69 
                 I+++G++ +GKttla+ L++        ++++ +++ + ++++        ++d    +d + ++ +l+ ++++++                       
  CCE27226.1  11 IAISGCSSSGKTTLARLLRDIF----PNTFILHQDDFYKPEEDIpskdgflDWDCAGAIDVPAMADALSYIRQHAEfpptllskedqnslgqspipesl 105
                 89****************9986....4444444444444444444445589999999999999999999999999999999999999888888888888 PP

      AAA_18  70 .................aleegknl.vidghlaeleseaakdikk...vvLtaspeelleRlekR 113
                                   ++++  l ++dg+l    s+aa + +    ++L++s+   + R e+R
  CCE27226.1 106 italrskvndrlppshpLRTKALRLcILDGFLLYAPSMAALQPHLdlkFFLRTSYARAKARREAR 170
                 88888888888888888666666666888888888888888888788888888888888888877 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.5e-06     0.004       2      20 ..      11      29 ..      10      41 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.5e-06
      AAA_28  2 ivitGgestGKTtlleaLa 20
                i+i+G++s+GKTtl++ L 
  CCE27226.1 11 IAISGCSSSGKTTLARLLR 29
                89**************997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.1e-06    0.0035       4      32 ..       7      35 ..       4     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.1e-06
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldee 32
                +a i+++ G+s +GKTtl+r l++ +++ 
  CCE27226.1  7 HALIIAISGCSSSGKTTLARLLRDIFPNT 35
                6889*******************999754 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.3e-06    0.0087      24     136 ..       8     122 ..       2     136 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.3e-06
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy...........salaqalareellrqllde.aesaeleawrekleealaavpe 110
                   ++ +sG s +GK++l+r l++ +  + +i+ + ++ + e++ip            +     +     + +++d+ +  +++++++ +l++   + + 
  CCE27226.1   8 ALIIAISGCSSSGKTTLARLLRDIFPNT-FILHQDDFYKPEEDIPSkdgfldwdcagA-----I----DVPAMADAlSYIRQHAEFPPTLLSKEDQNSL 96 
                 47999*****************655555.77777777777888887544333222220.....2....1111111111122222222222222222222 PP

      AAA_16 111 lagaea...srllellkrll.allsrderp 136
                      +   ++l  +l++ + ++l++ ++p
  CCE27226.1  97 GQ---SpipESLITALRSKVnDRLPP-SHP 122
                 22...123367777777666666665.555 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.1e-06     0.013       1      24 [.      10      33 ..      10      45 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.1e-06
         PRK  1 vIgvagsSGaGkttvarklekifg 24
                +I+++g S +Gktt+ar l++if 
  CCE27226.1 10 IIAISGCSSSGKTTLARLLRDIFP 33
                8*********************97 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00075       1.2       1      20 [.      11      30 ..      11      45 .. 0.85
   2 ?    1.1   0.2      0.17   2.8e+02     128     148 ..     148     168 ..     143     172 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00075
                    EEEE-STTSSHHHHHHHHHH CS
  Cytidylate_kin  1 iaiDGPagsGKssvaralae 20
                    iai G ++sGK ++ar+l +
      CCE27226.1 11 IAISGCSSSGKTTLARLLRD 30
                    8***************9976 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.17
                     TT-SEEEEEE--HHHHHHHHH CS
  Cytidylate_kin 128 pdaelKifldAsveeRakRRl 148
                     p+ +lK fl  s     +RR 
      CCE27226.1 148 PHLDLKFFLRTSYARAKARRE 168
                     7889*****999654444553 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0001      0.16       3      32 ..       9      41 ..       7      94 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
      AAA_24  3 lkiliyGpsgiGKTtlakel...gpkplfidte 32
                l i+i G s +GKTtla+ l    p+++++  +
  CCE27226.1  9 LIIAISGCSSSGKTTLARLLrdiFPNTFILHQD 41
                5699***************99888898888443 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00016      0.27      13      74 ..      10      87 ..       1     130 [. 0.63

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
                EEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG...................B-HHHCCHCEEEE-SS--S-TTS CS
                xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkp....teGeilldgkdlke...................qeleslrkeigvlpqepqlfpel 74
                ++ai G + +GK+tL++ll     +     +++         +                   ++ + +   ++++ q++++ p+l
  CCE27226.1 10 IIAISGCSSSGKTTLARLLRDIFPNtfilHQDDF-------YKpeedipskdgfldwdcagaIDVPAMADALSYIRQHAEFPPTL 87
                799***************9988765333322222.......22222222244555566666666666666666666666666665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012       0.2       3      33 ..      12      48 ..      10     172 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
      AAA_33  3 llvGlpGsGKstlaerllkklg.avllssdt.....l 33
                 + G + sGK+tla+ l    + +++l +d+     +
  CCE27226.1 12 AISGCSSSGKTTLARLLRDIFPnTFILHQDDfykpeE 48
                6789**********98766666888999999555550 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00022      0.36      16      38 ..       4      26 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00022
                TTSCSEEEEEEESTTSSHHHHHH CS
      NB-ARC 16 delqslvvalvGmgGvGKttlak 38
                d++  l++a++G   +GKttla+
  CCE27226.1  4 DDPHALIIAISGCSSSGKTTLAR 26
                79999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1266.03
//
Query:       CCE27227.1  [L=230]
Description: related to exostosin-like 3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-46  157.2   0.2    2.3e-46  156.8   0.2    1.1  1  PTH2      Peptidyl-tRNA hydrolase PTH2


Domain annotation for each model (and alignments):
>> PTH2  Peptidyl-tRNA hydrolase PTH2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.8   0.2   1.3e-50   2.3e-46       1     117 []     111     230 .]     111     230 .] 0.95

  Alignments for each domain:
  == domain 1  score: 156.8 bits;  conditional E-value: 1.3e-50
                 EEEEEEEESSSSS-HHHHHHHHHHHHHHHHHHHHHH.CH....HHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSSSSSTTCEE CS
        PTH2   1 lkmvlvvrkDLkmskGkiaaqcahAavalvkkllkesne....kellkeWeeegqkkivlkveseeeLlelaakakalglpaalirDagrtqiepgtkT 95 
                 +k+vlvvr+DL+m+kGkiaaqc+hA++a++k+l + + +    ++llk+We++gq+ki+++v+se+eL+el+ ka + gl+a++i+Dagrtqi+pg+ T
  CCE27227.1 111 CKLVLVVRTDLGMTKGKIAAQCSHATLACYKALVRAN-PdspqAKLLKRWEKRGQAKIAVQVKSEKELTELRWKALDMGLTAEVIQDAGRTQIDPGSLT 208
                 79******************************99985.3345569****************************************************** PP

                 EEEEEEEEHHHHHHHHTTSEB- CS
        PTH2  96 vlaigPapksivdkvtgkLkll 117
                 vl++gP+pks++d+vtg+Lkll
  CCE27227.1 209 VLGVGPGPKSLIDQVTGHLKLL 230
                 ********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1680.69
//
Query:       CCE27228.1  [L=550]
Description: probable UTP7-U3 snoRNP protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-39  133.8   0.0    1.4e-34  117.7   0.0    3.5  3  BING4CT        BING4CT (NUC141) domain
    1.6e-05   25.6   0.0        1.7    9.6   0.0    4.4  4  WD40           WD domain, G-beta repeat
    1.8e-05   24.0   0.1    0.00089   18.4   0.0    2.1  2  Coatomer_WDAD  Coatomer WD associated region
    4.5e-05   23.7   2.9        5.7    7.3   0.0    5.8  8  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
  ------ inclusion threshold ------
      0.032   12.8   0.0        6.1    5.3   0.0    2.4  2  Cytochrom_D1   Cytochrome D1 heme domain
        8.1    6.8   9.1       0.48   10.7   0.3    3.0  4  DUF3713        Protein of unknown function (DUF3713)


Domain annotation for each model (and alignments):
>> BING4CT  BING4CT (NUC141) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.092   2.7e+02       7      25 ..     209     227 ..     205     236 .. 0.77
   2 !   10.0   0.0   0.00019      0.58      15      46 ..     259     290 ..     250     306 .. 0.86
   3 !  117.7   0.0   4.7e-38   1.4e-34       1      79 []     378     456 ..     378     456 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.092
     BING4CT   7 lpgskieslrFvpfeDvlg 25 
                  +++++++++F p++ +l+
  CCE27228.1 209 RKHNEVTHMEFLPYHFLLA 227
                 56789*********98876 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00019
     BING4CT  15 lrFvpfeDvlgvghskgissiivPGsGepnfd 46 
                 ++  p++ vl vgh++g  ++  P s ep + 
  CCE27228.1 259 MAQNPYNAVLHVGHQNGTVTLWSPSSQEPLVK 290
                 5667**********************999765 PP

  == domain 3  score: 117.7 bits;  conditional E-value: 4.7e-38
     BING4CT   1 pYlthklpgskieslrFvpfeDvlgvghskgissiivPGsGepnfdaleanpfetkkqrrereVrsLLeKlqpelItld 79 
                 pY+t+ ++g+++e++r++pfeDvlgv h++g+ss+i+PG+Ge+nfdale npfet+kqr+e+eVr LL+Kl pe+I+ld
  CCE27228.1 378 PYMTWGAEGKRMERVRWCPFEDVLGVTHDQGFSSLIIPGAGEANFDALELNPFETAKQRQESEVRGLLNKLAPEMIALD 456
                 8****************************************************************************98 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.055   1.6e+02      13      38 .]     175     199 ..     163     199 .. 0.85
   2 ?    4.4   0.0     0.026        79       3      27 ..     204     228 ..     202     241 .. 0.81
   3 ?    2.3   0.0      0.12   3.7e+02      17      38 .]     260     281 ..     253     281 .. 0.78
   4 !    9.6   0.0   0.00057       1.7       3      38 .]     287     323 ..     285     323 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.055
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 ++++++ ++++++a +  ++ v+i+d
  CCE27228.1 175 IRDVKWLHNNQYFAVAQ-KKYVYIYD 199
                 99**********98655.99999998 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.026
                 EEEEEESSSSEEEEEEETTSSEEEE CS
        WD40   3 clrtltGHssvtslafspdgawlas 27 
                  l+ l+ H+ vt++ f p++ +la+
  CCE27228.1 204 ELHNLRKHNEVTHMEFLPYHFLLAT 228
                 6899****99********9999884 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.12
                 EEETTSSEEEEEETTSEEEEEE CS
        WD40  17 afspdgawlasGsdDgtvriWd 38 
                 a +p++a l  G+ +gtv +W+
  CCE27228.1 260 AQNPYNAVLHVGHQNGTVTLWS 281
                 55677777645**********5 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00057
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +l +l +H ++v+sla +++g++++s + D +  +Wd
  CCE27228.1 287 PLVKLLAHrGPVRSLAMDREGRYMVSTGQDLKMAVWD 323
                 5667779*999*************9999999999998 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.011        33     268     323 ..      63     111 ..      48     129 .. 0.76
   2 !   18.4   0.0     3e-07   0.00089     119     179 ..     146     207 ..     138     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.011
                    XXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXX-GGGSS-H CS
  Coatomer_WDAD 268 lefktavlrkdleevlkiiaasnllpeipkeegqkiirfLekkgypelAlqlvqDp 323
                    l+  ++ l+ ++++++ + + +++l       +++ + fLe +g +e  +++ qD 
     CCE27228.1  63 LRRNLKQLETKYQDAAIKAKDAEIL-------LENTSGFLEAEGELEKTYKVRQDA 111
                    4444444555555555555666666.......********************9995 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3e-07
                    XXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.... CS
  Coatomer_WDAD 119 lLgvksegsvsfYDweqgklvrridvkk.vknVvwsddgelvalvskdtvyilsynleavee 179
                    lL++  +g v+  Dw +gkl  ++++ + +++V w  +++++a+++k+ vyi+++n  + ++
     CCE27228.1 146 LLLAGRKGHVATMDWREGKLGCELQLGEtIRDVKWLHNNQYFAVAQKKYVYIYDRNGVELHN 207
                    788888888****************9988*************************99765554 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         4   1.2e+04      25      67 ..      42      84 ..      32      85 .. 0.69
   2 ?    4.2   0.0     0.018        54      46      90 ..     139     181 ..     136     183 .. 0.90
   3 !    7.3   0.0    0.0019       5.7      37      89 ..     171     219 ..     167     221 .. 0.82
   4 ?    3.5   0.0     0.029        88      21      79 ..     197     252 ..     189     260 .. 0.81
   5 !    5.2   0.0    0.0084        25      45      81 ..     260     296 ..     257     301 .. 0.82
   6 ?    2.6   0.0     0.057   1.7e+02      38      83 ..     295     348 ..     292     357 .. 0.79
   7 ?    1.4   0.0      0.14   4.1e+02      36      62 ..     384     410 ..     360     420 .. 0.79
   8 ?   -3.2   0.2       3.5     1e+04      20      43 ..     513     536 ..     508     538 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4
  ANAPC4_WD40 25 ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrllda 67
                 + ++ ++  +  + +++++ + + + k L   y+d +++  da
   CCE27228.1 42 EANKAYGRGTGINTKQIKDKKLRRNLKQLETKYQDAAIKAKDA 84
                 4566666666777777887788888888888888888876665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.018
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +  +g+ L  a  +g+v  +d  +gk+  +l+ +++  +  ++W 
   CCE27228.1 139 FTRNGRELLLAGRKGHVATMDWREGKLGCELQLGET--IRDVKWL 181
                  6789************************99999988..9999996 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0019
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                   ++++r+++W ++++ +ava +   v ++d  +g  +h+l+ ++e  vt +++
   CCE27228.1 171 LGETIRDVKWLHNNQYFAVAQK-KYVYIYD-RNGVELHNLRKHNE--VTHMEF 219
                  5789***************976.5788888.57888888888877..888776 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.029
  ANAPC4_WD40  21 vfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  ++  ng ++ +l    + +ev+++++ p   lLa     g ++  d ++g++v +++ k
   CCE27228.1 197 IYDRNGVELHNL---RKHNEVTHMEFLPYHFLLATIGTGGVLKYQDTSTGQLVAEMPSK 252
                  555555555555...7899**********************************998876 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.0084
  ANAPC4_WD40  45 aWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  a +p + +L v++++g+v l + +s++ + +l +++ 
   CCE27228.1 260 AQNPYNAVLHVGHQNGTVTLWSPSSQEPLVKLLAHRG 296
                  5577889***************999999888877765 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.057
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek........a 83 
                   + vrsLa   +g+ ++   +d ++ + d+   + v+++ + +           
   CCE27228.1 295 RGPVRSLAMDREGRYMVSTGQDLKMAVWDIRMFREVNNYYTRQPAtsvaisdtG 348
                  578**************************9999999998887776555555555 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.14
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgev 62 
                  +e+++ + ++W p + +L v +++g  
   CCE27228.1 384 AEGKRMERVRWCPFEDVLGVTHDQGFS 410
                  577888888999999999998888755 PP

  == domain 8  score: -3.2 bits;  conditional E-value: 3.5
  ANAPC4_WD40  20 lvfRlngqrvwtleedkedsevrs 43 
                    +R+   ++w+ +++++d++ ++
   CCE27228.1 513 DEKRMRIDELWNEQQKQKDKKHKE 536
                  557899999999988888877665 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.002       6.1      43      94 ..     139     190 ..     131     208 .. 0.91
   2 ?    4.7   0.0     0.003       9.1      13      88 ..     273     348 ..     262     357 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.002
                   -TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEEEEEE--TTSEEEEE CS
  Cytochrom_D1  43 fasdgRyvyvigRDgkvtliDLwakeivaevkiGlnarsvavSqddryvivg 94 
                   f+++gR ++++gR g+v  +D  + +   e+++G   r v+  ++++y +v+
    CCE27228.1 139 FTRNGRELLLAGRKGHVATMDWREGKLGCELQLGETIRDVKWLHNNQYFAVA 190
                   7899*****************99999**************999999998876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.003
                   GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEEEEEE--TT CS
  Cytochrom_D1  13 dagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlnarsvavSqdd 88 
                   ++g v+l   +s+e l +l ++     s    ++gRy+   g D k+ + D+ + + v++      a sva+S+ +
    CCE27228.1 273 QNGTVTLWSPSSQEPLVKLLAHRGPVRSLAMDREGRYMVSTGQDLKMAVWDIRMFREVNNYYTRQPATSVAISDTG 348
                   6777777777777776666555555567777888**********************99999999999999999766 PP

>> DUF3713  Protein of unknown function (DUF3713)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   0.00016      0.48      31      73 ..      53      95 ..      12     131 .. 0.82
   2 ?    1.0   0.0      0.16   4.9e+02      33      61 ..     356     384 ..     329     390 .. 0.60
   3 ?   -2.9   0.0       2.8   8.4e+03      45      78 ..     434     468 ..     431     475 .. 0.64
   4 ?   -3.8   0.5       5.4   1.6e+04      43      50 ..     524     532 ..     499     544 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
     DUF3713 31 lKtkdikvkklkdkkekvetkakslvekLkvttapsstySqvv 73
                + tk+ik+kkl+ ++++ etk ++++ k k + ++ ++ S   
  CCE27228.1 53 INTKQIKDKKLRRNLKQLETKYQDAAIKAKDAEILLENTSGFL 95
                569**********************999999888888887655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.16
     DUF3713  33 tkdikvkklkdkkekvetkakslvekLkv 61 
                 t+++  k l +k ++v++k+k+    +++
  CCE27228.1 356 TQTTIWKDLFNKNKAVQEKVKTPYMTWGA 384
                 33444899999999999999997777776 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.8
     DUF3713  45 kekvetkakslvekLkvtt.apsstySqvvllkvk 78 
                 k+  e+++  l++kL ++  a+ +++  +  l ++
  CCE27228.1 434 KQRQESEVRGLLNKLAPEMiALDPNFIGNLDLRSN 468
                 56677888888899888652455666555555555 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 5.4
     DUF3713  43 dk.kekvet 50 
                 ++ +++ ++
  CCE27228.1 524 NEqQKQKDK 532
                 332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       976  (0.0544369); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3673.58
//
Query:       CCE27229.1  [L=844]
Description: uncharacterized protein CPUR_00701 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.6e-106  355.3   0.0   6.4e-106  354.0   0.0    1.7  2  RIBIOP_C  40S ribosome biogenesis protein Tsr1 and BMS1 C-ter
    3.3e-17   62.3   0.0    8.6e-17   61.0   0.0    1.7  1  AARP2CN   AARP2CN (NUC121) domain


Domain annotation for each model (and alignments):
>> RIBIOP_C  40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0      0.95   8.6e+03       7      32 ..     218     243 ..     215     253 .. 0.77
   2 !  354.0   0.0  7.1e-110  6.4e-106       1     292 []     517     818 ..     517     818 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 0.95
    RIBIOP_C   7 vearerfakyrglkslrtsewdpken 32 
                 ++a++r +   +lks+ t    ++e+
  CCE27229.1 218 EPAKQRTSTVASLKSFITHFHPEQEK 243
                 68999999999999999998877666 PP

  == domain 2  score: 354.0 bits;  conditional E-value: 7.1e-110
    RIBIOP_C   1 vetpedvearerfakyrglkslrtsewdpken...lpeeyarifefenfketkkrvlkealeeregvegGtyvrleiknvpeelveeknfdekkplivf 96 
                 +e++++v arer+a+yrglkslrts+w+++e+   +pe+++r++++ ++++++ r+++eal   +gv++Gt+v+++i+++  +  ++ + ++++p+++f
  CCE27229.1 517 IELHPNVLARERLARYRGLKSLRTSPWQEDEDrahEPEDWRRLLQIPDYNSSRSRAVREALV--GGVAPGTRVQVHIRGLSANSPAAASYKPSSPVTLF 613
                 6899***************************9******************************..**************9997777766789******** PP

    RIBIOP_C  97 gllphEekvsvvnvrikrhreyekpikskdplifsvGfRrfqakPifsqed.tknnkhklerylkpghtcvatfygpitfpntpvlafkel........ 186
                 +ll+hE+k++ +n+ i+ +++y + iksk++li+++G+Rr+ +kPifs    t+n++hk+ r+l+pg++++a+f+gp+t++ +pv++fk++        
  CCE27229.1 614 SLLRHENKKTSLNYLINLSNDYAQSIKSKEELIVQCGPRRMIIKPIFSHPGsTPNDVHKFCRFLHPGQSAIASFIGPVTWGAVPVMFFKRTapspghhg 712
                 *************************************************99769***********************************8889999999 PP

    RIBIOP_C 187 sskeasfrlvatGsvlevdpsriivkrivLtGhpfkihkktaviryMFfnpedvawFkpveLrTksGrrGhIkeslgthGyfkatFddklkqsDiVlms 285
                 ++++ +++l++tG+ l +++sr+++krivLtGhp++i+kk++++ryMFf+++dv+wFk+++L+T++Gr+G++ke+lgthGyfkatFd++++++D V +s
  CCE27229.1 713 QEQDLGLTLIGTGTALPPSTSRVVAKRIVLTGHPYHINKKIVTVRYMFFSRDDVEWFKALPLWTRRGRTGFVKEPLGTHGYFKATFDGRINPQDAVGVS 811
                 78899********************************************************************************************** PP

    RIBIOP_C 286 lYkrvfp 292
                 lYkr++p
  CCE27229.1 812 LYKRMWP 818
                 *****98 PP

>> AARP2CN  AARP2CN (NUC121) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   9.6e-21   8.6e-17       1      83 [.     252     325 ..     252     327 .. 0.96

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 9.6e-21
     AARP2CN   1 EilnllrfisvqkfrplswReqrpyiladrveiltdseskeeeskedrtlsveGyvrGsplsanqlvHipglGDfqiekiekl 83 
                 E++nl+r++++++++ ++wR++r+++la+++e+ ++++++           ++G+vrG++l+a++lv i ++G +q+eki ++
  CCE27229.1 252 ECSNLMRTLCNTTPKGVRWRDDRSWMLAEDIEFAASESES---------TIITGVVRGRGLKADRLVQIGDWGVYQVEKIVAA 325
                 89*********************************99999.........89*****************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5719.28
//
Query:       CCE27230.1  [L=216]
Description: probable Ni-binding urease accessory protein (UreG) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-32  112.3   0.0    2.3e-32  112.0   0.0    1.1  1  cobW      CobW/HypB/UreG, nucleotide-binding domain
      0.003   16.6   0.0     0.0046   16.0   0.0    1.3  1  MeaB      Methylmalonyl Co-A mutase-associated GTPase MeaB


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.0   2.6e-36   2.3e-32       8     174 ..       4     166 ..       1     169 [. 0.93

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 2.6e-36
                 STTCCHHHHHHHHH.CT--SS-EEEEESS-SSCHCCCCCCHCCCT.....EEEETTTTECCH.CTT-HHHHHHHHHHHH..TT-SEEEEEECT.TTTHH CS
        cobW   8 flGsGKTtLlnhll.enraglklavivNefgevsiDaellretgve....ivelenGciCct.lredllkelealeere..erldviliEttG.laePa 97 
                 ++GsGKT+L+ +l+ + r++++la ++N++  + +Dae+l+++++     i  +e+G+++++ +red++++l+ale+++    +d++liE++G +++++
  CCE27230.1   4 PVGSGKTALMLALClALRSKYSLAAVTNDIF-TREDAEFLTRHAALpperIRAIETGGCPHAaVREDISANLAALEDLHarFAPDLLLIESGGdNLAAN 101
                 79***********999***************.********9997667888***************************9966668*********777777 PP

                 HHHTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC...HHHHHHHHHHHHTTS- CS
        cobW  98 pvafteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldee.allekleerlrqlnpeak 174
                  +         +  +d++v+v+D+    + ++k ++k++ +++ +dllv+nKtDl++++ a+l+++e+++r+++++ +
  CCE27230.1 102 YS---------RELADFIVYVIDV----SGGDKVPRKGGPGITQSDLLVVNKTDLAEAVgADLAVMERDARKMREGGP 166
                 77.........99***********....99*******************************************98765 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.1e-07    0.0046     120     240 ..      84     197 ..      39     203 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.1e-07
                 TT-SEEEEEEESSTTHHHHHHTT-SEEEEEEESSTTTTTTT--CCCHHH-SEEEEE---HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEBCCCTBSH CS
        MeaB 120 aGfDvvlietvGvGqsevdvaevvdtfvvlllpeaGDelqgikkGileiaDiivvnkaDkkeaekaarelraaleleeekekeWrpkvlktsavegeGi 218
                 +  D +lie  G   +     e++d +v ++  ++GD++       +  +D++vvnk+D++ea  a   l + +e + +k +e  p v   + ++  G+
  CCE27230.1  84 FAPDLLLIESGGDNLAANYSRELADFIVYVIDVSGGDKVPRKGGPGITQSDLLVVNKTDLAEAVGAD--LAV-MERDARKMREGGPTVFAQV-KKDVGV 178
                 45588888888888888888899***************976554456779*********99887665..433.3445555555666666554.566788 PP

                 HHHHHHHHHHHHHHHHTTHHHH CS
        MeaB 219 delvdaieehrevlkktGllek 240
                 +++v+ i + ++   ++G+ e+
  CCE27230.1 179 EHIVNLILSAWK---ASGAEEE 197
                 888887766554...4444455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1590.76
//
Query:       CCE27231.1  [L=369]
Description: related to ribosomal protein YmL40,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.2   0.0      0.027   14.4   0.0    1.4  1  KOW       KOW motif


Domain annotation for each model (and alignments):
>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.5e-06     0.027       1      31 [.     117     147 ..     117     148 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-06
                 TTSEEEESSSTTTTCEEEEEEEETTTTEEEE CS
         KOW   1 pGdhVkVvsGphkGktGkVvkvdqhkvrVfv 31 
                 pGd V  ++Gp+kGk+ ++++v + + +V++
  CCE27231.1 117 PGDRVVLLDGPDKGKIDRITEVKPSTGTVLL 147
                 8***************999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2816.58
//
Query:       CCE27232.1  [L=195]
Description: probable GTPase Rho [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-55  186.9   0.0    2.2e-55  186.7   0.0    1.0  1  Ras        Ras family
    7.2e-22   77.8   0.0    1.2e-21   77.2   0.0    1.3  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    4.1e-07   29.6   0.0    6.6e-07   28.9   0.0    1.2  1  Arf        ADP-ribosylation factor family
     0.0019   17.6   0.0     0.0026   17.2   0.0    1.2  1  SRPRB      Signal recognition particle receptor beta subunit
  ------ inclusion threshold ------
       0.13   11.6   0.0       0.14   11.5   0.0    1.3  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
       0.16   11.2   0.1        1.5    8.0   0.0    2.0  2  NB-ARC     NB-ARC domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.7   0.0   7.3e-59   2.2e-55       1     160 [.       7     178 ..       7     180 .. 0.98

  Alignments for each domain:
  == domain 1  score: 186.7 bits;  conditional E-value: 7.3e-59
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeik 98 
                 Klv+vGd+a+GKt+ll+ f k++F+e y +T+ +++y++++evdgk+v+l +wDTAGqe++++lr+l+y d+++il++++i+s +s++nv+ kw++e+ 
  CCE27232.1   7 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV-FENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAIDSPDSLDNVQeKWISEVL 104
                 9*******************************.**********************************************************9******* PP

                 HHSTTTSEEEEEEETTTGGG............G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  99 rvaeenvpivLvGnKvDlee............kravsteegeelakelg.lkfletSAktnenveeafeellrei 160
                 + ++  +pi+LvG K Dl+             ++ v+ e gee+ k++g +k+le+SAktne+v+e+fe+++r++
  CCE27232.1 105 HFCQ-GLPIILVGCKKDLRYdqktnaelqktnQKPVTPEAGEETRKKIGaYKYLECSAKTNEGVREVFEHATRAA 178
                 ****.7*************99****************************99*******************99976 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0   3.9e-25   1.2e-21       1     119 [.       7     120 ..       7     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 3.9e-25
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCH. CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenl. 95 
                 K+v+vGd++ GKt+ll  f +++f e + +t+  +++   v +++        k+v+l++WDtaGqe+++ l+pl + +++++++++     +s +n+ 
  CCE27232.1   7 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-V-EVD-------GKHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAidsPDSLDNVq 96 
                 99*****************************98888654.3.333.......4789*****************************99743323446663 PP

                 HHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  96 keWlkelkkvagkspvilvgnkiD 119
                 ++W++e+ + ++  p+ilvg k D
  CCE27232.1  97 EKWISEVLHFCQGLPIILVGCKKD 120
                 68********************99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   2.2e-10   6.6e-07      15     169 ..       6     172 ..       2     177 .. 0.73

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 2.2e-10
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEE.EEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESE..EEEEEETT-CTTHHHHHHH.HHH CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTigfn.veelei..knlkftvwDvGGqeklRplWknYfektda..vifvvDsadreRleeakee.Lka 106
                  +++++G  + GKt +l  ++++ + +  vPT+  n v ++e+  k++++ +wD  Gqe   +l    +++ ++  + f +Ds d+  l++ +e+ +++
  CCE27232.1   6 RKLVIVGDGACGKTCLLIVFSKGTFPEvYVPTVFENyVADVEVdgKHVELALWDTAGQEDYDRLRPLSYPDSHVilICFAIDSPDS--LDNVQEKwISE 102
                 5899***999**************988589**988745666655599***********9887777666666555114588888876..66665542667 PP

                 HCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS.........SSSSEEEEEEBTTTTBTHHHHHH CS
         Arf 107 lleeeelkevallvlaNKqDlpealseeelrellgleelk.........gkrkleiqkcsavkgeglkegle 169
                 +l+    +  ++++++ K+Dl+ + +++   ++ + + ++         +    +  +csa ++eg+ e +e
  CCE27232.1 103 VLH--FCQGLPIILVGCKKDLRYDQKTNAELQKTNQKPVTpeageetrkKIGAYKYLECSAKTNEGVREVFE 172
                 775..47899***********988877665555666665555555432233345677899999999998887 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.7e-07    0.0026       3     122 ..       5     120 ..       3     150 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.7e-07
                 --EEEEE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG...GGTT-SEEEETT-GCC.SHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHH CS
       SRPRB   3 kpavllvGlsdsGKTslftrLttdsvkktvtSq..essaalkvksekgskltliDfPGhekl.rqklleklkaksslkglvfvvDStidpkevkevAEl 98 
                 ++++++vG   +GKT l+   +++++ + ++    e+ +a+   + k+ +l+l D  G+e   r + l +    s++  + f +DS     +v+e   +
  CCE27232.1   5 RRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTvfENYVADVEVDGKHVELALWDTAGQEDYdRLRPLSY--PDSHVILICFAIDSPDSLDNVQE--KW 99 
                 67899*******************999999876657777766678899999999****998723333333..566789999****9766666655..35 PP

                 HHHHHHHHHHHTT---EEEEEE-T CS
       SRPRB  99 lyeilliteklkdavdiliACnKq 122
                 + e+l   +     + il+ C+K+
  CCE27232.1 100 ISEVLHFCQ---GLPIILVGCKKD 120
                 666666555...556677777775 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.8e-05      0.14       1      63 [.       7      68 ..       7     155 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.8e-05
   Gtr1_RagA  1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrfl.gnltlnlwDcgGqeafve 63
                k++++G +  GKt++  i+F++ +  ++ ++ +  +    +v++  ++++l lwD  Gqe++  
  CCE27232.1  7 KLVIVGDGACGKTCLL-IVFSKGTFPEV-YVPTVFENYVADVEVDgKHVELALWDTAGQEDYDR 68
                7899**********96.88888766665.445555555555555515689**********9854 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.047   1.4e+02      23      37 ..       8      22 ..       2      43 .. 0.87
   2 ?    8.0   0.0   0.00049       1.5     152     223 ..      65     137 ..      24     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.047
                EEEEESTTSSHHHHH CS
      NB-ARC 23 valvGmgGvGKttla 37
                + +vG g +GKt l+
  CCE27232.1  8 LVIVGDGACGKTCLL 22
                679*********996 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00049
                 EEEEESS--HHHHHHHHHHCCTS-GGCHH..CHHHHHHHHHHCTT-HHHHHHHHHHHC-T.CSCCHHHHHHHH CS
      NB-ARC 152 ekievelLekdeawellenkvfekkleekesleevakeivekckGlPlalkvlggllstk.ktveewkkvlek 223
                 +  +++ L+  ++  +l  ++++ +++ +++ e+   e+ + c+GlP+ l+   + l+   kt  e++k ++k
  CCE27232.1  65 DYDRLRPLSYPDSHVILICFAIDSPDSLDNVQEKWISEVLHFCQGLPIILVGCKKDLRYDqKTNAELQKTNQK 137
                 55566778888899999999999999999999***************99987777666666888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1432.13
//
Query:       CCE27233.1  [L=539]
Description: related to YBL089w [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-66  224.5  32.8    2.4e-66  224.2  32.8    1.0  1  Aa_trans   Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.2  32.8   1.3e-70   2.4e-66       2     407 ..     136     524 ..     135     528 .. 0.92

  Alignments for each domain:
  == domain 1  score: 224.2 bits;  conditional E-value: 1.3e-70
    Aa_trans   2 tssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvs 100
                 +s+ +sa++n++++i+GaG+++ PyA++q+Gl++G++ll+  +++  +t+ l+v  sk      + +s++ +++ ++G+ g ++i+ a+ ++ fG +v+
  CCE27233.1 136 KSGLKSAFMNMANSIIGAGIIGQPYAIRQAGLLAGILLLVGLTIVVDWTICLIVINSKL----SGTSSFQGTVQYCFGRPGLIAISIAQWIFAFGGMVA 230
                 577899***************************************************96....49********************************** PP

    Aa_trans 101 yliligdllpaifesffdt.........lllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkask 190
                 + +++gd++p+++  +  +         l+ ++v +++ ++ +  pL+l ++++kL ++S++al+ +    vi+v+v++++ ++  +  ++ ++   + 
  CCE27233.1 231 FGVIVGDTIPHVLLAIWPNlgsvpvvglLTDRRVAIVFFIMGVSYPLTLYRDIAKLAKASTFALIGMS---VIVVTVIVQGFFVPSEAKGSFGTPLLTI 326
                 *************9999888999999865557777777778899*********************995...6777777777777777777777766677 PP

    Aa_trans 191 lkglflaigiivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfpl 289
                 + g+f+aig+i FAf++h++ l i+ +l++p    ++ +v++ s+ ++++ ++ ++l+G+ltFG+++ gn+l+n+p  + + +i++l+++l+++++ pl
  CCE27233.1 327 NGGIFQAIGVISFAFVCHHNSLLIYGSLRTPTI-DNFSRVTHYSTGISMLACLTMALAGFLTFGDKTLGNVLNNFPSDNSMVNIARLCFGLNMLTTLPL 424
                 79*****************************99.99*************************************************************** PP

    Aa_trans 290 qlhplrqvvenllikkeavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlkliktekksleklvkkkil 388
                  ++++r+v+ +   +           + ++ +++lv+ ++lvv+++ ++l+++ l+ v++lvGats++ +++ilP++ +++l++ ++   +++v     
  CCE27233.1 425 EAFVCREVMLTYWYP----------DEGFHLVRHLVLSTGLVVAATAVSLLTCDLGVVFELVGATSAVAMAYILPPMCYIRLTTRSW---RTYV----- 505
                 *********999965..........6888889***************************************************9996...4443..... PP

    Aa_trans 389 dlicivlglllvfyglavl 407
                 +++++v+g++++++++ ++
  CCE27233.1 506 AYAVVVFGVAVMVISVFQA 524
                 5789999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3669.29
//
Query:       CCE27234.1  [L=546]
Description: related to aspartic proteinase,pepstatin-sensitive [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-70  237.9   5.5    2.5e-70  237.4   5.5    1.2  1  Asp       Eukaryotic aspartyl protease
      3e-09   37.4   7.4    1.2e-08   35.4   2.3    2.9  2  TAXi_N    Xylanase inhibitor N-terminal
     0.0031   17.3   0.3     0.0067   16.2   0.0    1.8  2  TAXi_C    Xylanase inhibitor C-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.4   5.5   4.3e-74   2.5e-70       1     314 [.     132     437 ..     132     438 .. 0.95

  Alignments for each domain:
  == domain 1  score: 237.4 bits;  conditional E-value: 4.3e-74
                 EEEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   1 eYfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdgsvsGflsqdtvkvggltvknqefgeatkepgs 99 
                 +Yf++  +G+ ++++ +++DTG   +WV+ s+ck ++ac+ h+ + + +S t  ++++s+sisYG+g+v+G l+ dtv+vgg +v+  +fg+a+k+++ 
  CCE27234.1 132 SYFIKARLGSKKKELYLLLDTGAGSTWVMGSSCK-EKACTLHNNFGHDDSDTLIDKKRSFSISYGTGTVQGDLASDTVSVGGFSVQ-YTFGLASKTSDD 228
                 59*******************************9.99************************************************9.9**********7 PP

                 HHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-S..TTSSEEEEEESSEEGGGEEEEEEEEEESS.TSSTEEEEEEEEETTEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
         Asp 100 tflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnr..eeeeggeivfGgvDeskykGsltyvpvts.kgywqielesvtvggktvlc 195
                  f++ +fdGiLG+++++ +++++    +++ + + +++++f+v l+r  + +++ge+ fG++++ ky+G++ty+ v+s +g w+i++e++ +ggk++  
  CCE27234.1 229 -FTHFAFDGILGMSMNQGASDNF---LSTVADGKKLDKNIFGVALSRaaDGHNTGEVRFGAINPDKYQGDITYTAVDSkDGDWSIQIEDMAYGGKKA-G 322
                 .66666********888888765...77788899*************9999*************************997788**************9.9 PP

                 EEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESE.EECCTSSSEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
         Asp 196 ssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilgl.vseeegdlwiLGd 293
                 + g+ a +DtGTs++ +p++ v+k+   i +++s +  +++v Cds   ++d++ft++g+++++++++ +  ++++  ++C++++  +e  + +w+LGd
  CCE27234.1 323 NGGIPAYIDTGTSFVFGPADKVKKLHAVIAGSSSGDGMTFTVPCDS---SDDLTFTFSGVNYKLSPKDWISPKDNN--GKCTSNIyGHEVVEGAWLLGD 416
                 ************************************999******7...89999999*************999975..68*****66677889****** PP

                 HHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxx RF
         Asp 294 vFlrsayvvfdldnnrvglAe 314
                 +Fl+++y+vfd+d+ rvg+A+
  CCE27234.1 417 TFLKNVYTVFDRDQGRVGFAA 437
                 ********************7 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   2.3     2e-12   1.2e-08       1     177 [.     133     284 ..     133     285 .. 0.81
   2 ?   -2.2   0.2       0.7   4.2e+03      93     101 ..     488     496 ..     435     533 .. 0.46

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 2e-12
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCk.aceasssaksgsssstceyeisygadgssssGvlat 98 
                 Y+++ ++G+ +++l+l++DtG   tWv                           +c++++C+ + +  +  + +  +++ +++isyg  g +++G+la+
  CCE27234.1 133 YFIKARLGSKKKELYLLLDTGAGSTWVMG------------------------SSCKEKACTlHNNFGHDDSDTLIDKKRSFSISYG-TG-TVQGDLAS 205
                 9****************************........................5799999994334455555666788889999997.55.9******* PP

      TAXi_N  99 dtltlsstdgksvkvpnlvfGCgksnlgglaa.gadGilGLGrgk...lSlvsqlaskg.slgnkFsyCL.ssssssssgvlffG 177
                 dt+++     ++ +v+  +fG +++++ ++ +   dGilG++ ++     ++s +a  +   +n F++ L ++++ +++g + fG
  CCE27234.1 206 DTVSV-----GGFSVQ-YTFGLASKTSDDFTHfAFDGILGMSMNQgasDNFLSTVADGKkLDKNIFGVALsRAADGHNTGEVRFG 284
                 *****.....666665.888988855555544379*******86644577888888766356899*****999999******999 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.7
      TAXi_N  93 sGvlatdtl 101
                  G  +++t+
  CCE27234.1 488 LGLSGHETV 496
                 233333333 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.1e-06    0.0067      94     160 ..     371     436 ..     319     437 .. 0.94
   2 ?   -3.8   0.3       1.7   9.9e+03      26      51 ..     514     539 ..     505     544 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-06
                 -EEEEESSS-EEEE-GGGGEEE-SSSEEEE-EEE--S--SSSEEE-HHHHBTS-EEEETTTTEEEEE CS
      TAXi_C  94 titlvleggaewtisgenllvkveggvvClafvesgvagesavviGglqlednllvFDleksrlgFs 160
                 ++t+ +  g + ++s+++ +   +++  C   + +++  e+a  +G   l++++ vFD +++r+gF+
  CCE27234.1 371 DLTFTFS-GVNYKLSPKDWISPKDNNGKCTSNIYGHEVVEGAWLLGDTFLKNVYTVFDRDQGRVGFA 436
                 6788888.89********************************************************7 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.7
                 -S----SEEE-SSSSSEEE-HHHHHH CS
      TAXi_C  26 dktgsggtvlstgtpytvletdvYra 51 
                 ++++s+ t l   ++y++++ ++++ 
  CCE27234.1 514 QSSTSAATALARSSQYAQMAAAMFSV 539
                 55566777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3745.89
//
Query:       CCE27235.1  [L=332]
Description: uncharacterized protein CPUR_00707 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.028   14.1   9.3          1    9.2   0.1    3.6  3  PPTA      Protein prenyltransferase alpha subunit repeat


Domain annotation for each model (and alignments):
>> PPTA  Protein prenyltransferase alpha subunit repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   2.1    0.0039        71      19      26 ..     160     167 ..     159     169 .. 0.84
   2 ?    9.2   0.1   5.8e-05         1       8      26 ..     190     208 ..     187     210 .. 0.86
   3 ?    4.4   0.1    0.0019        34      14      24 ..     276     286 ..     276     288 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0039
                 HHHHHHHH CS
        PPTA  19 WnyRrwll 26 
                 Wn+ rwl 
  CCE27235.1 160 WNHKRWLA 167
                 ******96 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 5.8e-05
                 HHHH-TT-CHHHHHHHHHH CS
        PPTA   8 liekdpkNYsaWnyRrwll 26 
                 ++e++ +NY aW y r ++
  CCE27235.1 190 AAERHSRNYYAWTYARDVI 208
                 578999********99887 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0019
                 T-CHHHHHHHH CS
        PPTA  14 kNYsaWnyRrw 24 
                 +N+s+W+  + 
  CCE27235.1 276 RNESVWHFLKN 286
                 7******8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2567.39
//
Query:       CCE27236.1  [L=217]
Description: uncharacterized protein CPUR_00708 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-61  204.6   3.8    7.9e-61  204.6   0.5    1.9  2  CHD5           CHD5-like protein
  ------ inclusion threshold ------
      0.046   13.8   0.2       0.07   13.2   0.2    1.4  1  ImpA_N         ImpA, N-terminal, type VI secretion system
        0.1   12.5   0.1       0.14   12.0   0.1    1.2  1  PcfJ           PcfJ-like protein
        1.2    9.3   4.5        2.1    8.5   1.0    2.2  2  T3SS_needle_E  Type III secretion system, cytoplasmic E compo


Domain annotation for each model (and alignments):
>> CHD5  CHD5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.6   0.5   1.8e-64   7.9e-61       2     159 .]       7     166 ..       6     166 .. 0.98
   2 ?    1.3   0.2     0.062   2.8e+02       6      54 ..     169     216 ..     168     217 .] 0.72

  Alignments for each domain:
  == domain 1  score: 204.6 bits;  conditional E-value: 1.8e-64
        CHD5   2 vifllvlvtkllntigkstiknllwllylk..kvssksakeqrklkkellklkeelnsisaqDefAkWaKlnRkldkleeeleklkkelsaskssfkkk 98 
                 +i++++lv +++n++g+s+i++l+w+l++   +++sk a+eqr+l++++lk+++eln++s+qDefA+WaKl+R++dkl e+l+++kk l+ ++s+f+k+
  CCE27236.1   7 TILAVELVAQFINAVGASQINDLIWTLINYlpISTSKAAAEQRRLQADYLKIRRELNATSSQDEFARWAKLRRQHDKLLEQLDAAKKGLEVARSQFDKY 105
                 799************************99988999**************************************************************** PP

        CHD5  99 lkkvllvlttvpqlvlkfwyrktpvfylpkgwfPllvewllslplaplgsVSltiWlfacn 159
                 l+ +++++t+vpq+v+ fwy+k+p+f+lp+gwfP+++ew++s+p+aplgsVS + W++ac+
  CCE27236.1 106 LTAIRMLVTKVPQYVVPFWYGKEPMFWLPYGWFPYYAEWIISFPRAPLGSVSAPSWQLACS 166
                 ************************************************************6 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.062
        CHD5   6 lvlvtkllntigkstiknllwllylkkvssksakeqrklkkellklkee 54 
                 l+l+ +++ +igk+  ++   ++    vs+++a ++++  ke l++k+e
  CCE27236.1 169 LTLLSEIIIFIGKQLFTQTKTKVPMP-VSATKAPKTSTQSKEKLEAKKE 216
                 67888999999999999887666555.4556667777777777787777 PP

>> ImpA_N  ImpA, N-terminal, type VI secretion system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.6e-05      0.07       3      55 ..      38      86 ..      36     108 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
      ImpA_N  3 pisddspcGedlrydpefdaleearnkarsdqsieakaadWkkveelaeelle 55
                pis  + + e+ r ++++ ++++++n+++s    +++ a W+k++++  +lle
  CCE27236.1 38 PISTSKAAAEQRRLQADYLKIRRELNATSS----QDEFARWAKLRRQHDKLLE 86
                9999************************66....79999******99999995 PP

>> PcfJ  PcfJ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.2e-05      0.14       3      50 ..      53     100 ..      51     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.2e-05
        PcfJ   3 eDylrmlrelgkdlrsekvlcpedlkaaHDklvrkkereeekkrleek 50 
                 +Dyl++ rel+   +++++++ ++l+++HDkl+++  ++++  + ++ 
  CCE27236.1  53 ADYLKIRRELNATSSQDEFARWAKLRRQHDKLLEQLDAAKKGLEVARS 100
                 7*****************************999998888776666555 PP

>> T3SS_needle_E  Type III secretion system, cytoplasmic E component of needle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.0   0.00048       2.1      14      51 ..      42      79 ..      37      80 .. 0.91
   2 ?    2.0   0.2     0.053   2.4e+02      15      33 ..      80      98 ..      78     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00048
                   HHHHHHHHHHHHHHHHHHHHHCCTSSHHHHHHHHHHHH CS
  T3SS_needle_E 14 eqakelqdrLeaArarLkqalsspqspeeYqqlqllae 51
                   ++a++ q+rL+a   +++++l    s +e++++++l++
     CCE27236.1 42 SKAAAEQRRLQADYLKIRRELNATSSQDEFARWAKLRR 79
                   6788999***************************9875 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.053
                   HHHHHHHHHHHHHHHHHHH CS
  T3SS_needle_E 15 qakelqdrLeaArarLkqa 33
                   q ++l+++L+aA++ L+ a
     CCE27236.1 80 QHDKLLEQLDAAKKGLEVA 98
                   5678999*****9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1644.49
//
Query:       CCE27237.1  [L=356]
Description: uncharacterized protein CPUR_00709 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2546.91
//
Query:       CCE27238.1  [L=526]
Description: related to RUD3-suppressor of uso1-1 transport defect [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-09   37.0   0.1    4.1e-09   36.0   0.1    1.6  1  GRAB            GRIP-related Arf-binding domain
    1.1e-05   24.5  26.7    1.1e-05   24.5  26.7    2.4  2  Spc7            Spc7 kinetochore protein
     0.0029   17.7  24.3     0.0029   17.7  24.3    3.6  4  Rootletin       Ciliary rootlet component, centrosome cohesio
     0.0042   17.1   1.8     0.0042   17.1   1.8    4.5  4  DUF1664         Protein of unknown function (DUF1664)
     0.0064   16.1  49.9      0.085   12.4  29.2    2.4  2  Filament        Intermediate filament protein
  ------ inclusion threshold ------
      0.012   16.1  14.4      0.012   16.1  14.4    3.7  4  Fez1            Fez1
      0.032   14.2  56.3       0.64   10.0  17.8    4.1  4  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.034   14.5   0.9      0.034   14.5   0.9    5.0  5  Tup_N           Tup N-terminal
      0.043   14.0   1.0      0.043   14.0   1.0    3.7  4  LigT_PEase      LigT like Phosphoesterase
      0.053   14.0   0.8      0.053   14.0   0.8    4.7  4  NPV_P10         Nucleopolyhedrovirus P10 protein
      0.083   12.3  49.7        1.2    8.6  24.0    3.6  3  Golgin_A5       Golgin subfamily A member 5
       0.12   12.3  11.3        2.2    8.3   0.6    4.4  3  Med10           Transcription factor subunit Med10 of Mediato
       0.28   11.2  35.1       0.33   11.0   3.2    4.3  4  Laminin_II      Laminin Domain II
       0.31   11.1  20.9          1    9.4   2.3    3.4  3  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
       0.67    8.1  51.4     0.0047   15.2  29.2    2.4  3  FPP             Filament-like plant protein, long coiled-coil
        1.3    8.8  53.6      0.058   13.2  11.4    3.3  3  KASH_CCD        Coiled-coil region of CCDC155 or KASH
        2.2    7.6  49.8       0.52    9.6  14.3    3.5  3  GAS             Growth-arrest specific micro-tubule binding
        2.9    8.1  70.0       0.55   10.4  19.4    4.5  1  ATG16           Autophagy protein 16 (ATG16)
        3.2    8.2  28.6        7.7    7.0   0.7    7.0  5  FlaC_arch       Flagella accessory protein C (FlaC)
        3.9    7.1  37.3        1.8    8.2  23.3    2.8  2  SHE3            SWI5-dependent HO expression protein 3
        4.2    6.8  37.4        1.2    8.6  18.1    2.3  2  Exonuc_VII_L    Exonuclease VII, large subunit
        4.6    7.4  31.6        7.9    6.7  11.1    4.3  4  Fib_alpha       Fibrinogen alpha/beta chain family
        5.4    4.4  52.0         68    0.8  52.0    2.3  1  DUF3584         Protein of unknown function (DUF3584)
        6.2    6.7  41.4        3.3    7.6   0.5    5.0  4  CdvA            CdvA-like coiled-coil domain
        9.2    6.6  30.7       0.24   11.6   1.9    6.1  6  HALZ            Homeobox associated leucine zipper


Domain annotation for each model (and alignments):
>> GRAB  GRIP-related Arf-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.1   5.7e-12   4.1e-09       1      19 []     390     408 ..     390     408 .. 0.97

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 5.7e-12
        GRAB   1 sseenVDKrLISNLllsFL 19 
                 ++e+nVD+++I+N+ll+FL
  CCE27238.1 390 KPEDNVDRQVITNHLLHFL 408
                 79****************9 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5  26.7   1.5e-08   1.1e-05     137     294 ..      97     255 ..      94     259 .. 0.95
   2 ?    1.5  15.5      0.15   1.1e+02     168     262 ..     255     353 ..     248     370 .. 0.51

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.5e-08
        Spc7 137 legLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleek 235
                 +e+L+++l+++ ++ e++ ++++ + e  +++++  ee++++l e++ek++e      + dk++Lee+re+++el+ae ee++   +    ++++l+++
  CCE27238.1  97 VEQLRKQLQSIQTTHENEVAQMKVDLEDSNSAKEHAEEQYQTLLERVEKIKESLSGRLKRDKADLEEARERIDELEAENEELRGSAQATGGDVDKLKQE 195
                 79**************************************************99999999*************************************** PP

        Spc7 236 ieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleeltg.wkivslsgstl 294
                 +++++++ s+l+++ + + +  +++k+  ++ v+ lk+e+k+  +  g w+++ +++ ++
  CCE27238.1 196 LQDATTELSSLRSRNNLSAHNWQKEKEELTKTVQHLKDEMKTTANAMGeWEVLAMEERSI 255
                 *****************************************9999876599888887665 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.15
        Spc7 168 llpeleeekaeleeeleklqeaaeeles...idkeeLeelreelaelk.aeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckg 262
                 ++++l  + ++lee+l++l++ +e  ++   ++++ + +l+++l+e++ a  +e+++++++ ++ql++ ++ + +++++ +++ee+ +   + le++  
  CCE27238.1 255 IKENLWDKVSDLEEQLATLRRNYEAAAAdrdSQSTLVDNLQNALREIQdARKKELRDMVETTESQLQAHKTLVRQAEARARDAEEAKETLTKELERTAP 353
                 555555566666666666666443333222244455555555555533033344555555555555555555555555555555555555555554433 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  10.3       0.3   2.1e+02      75     143 ..      82     129 ..      11     150 .. 0.53
   2 !   17.7  24.3     4e-06    0.0029      20     148 ..      92     233 ..      91     238 .. 0.80
   3 ?   -0.5   0.2       1.4     1e+03     152     171 ..     258     277 ..     232     283 .. 0.73
   4 ?    3.7  10.5     0.075        54       2      87 ..     275     355 ..     274     390 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.3
   Rootletin  75 kLeeErqrseklaqvnslLreqleearqaneaLtedlqkltkdwerlreeleqkekewreeeeafneyl 143
                 k                     le+++++ eaL+ ++++l+k+++++++  e++ ++++   e  n+  
  CCE27238.1  82 K---------------------LEAMSKEREALRAEVEQLRKQLQSIQTTHENEVAQMKVDLEDSNSAK 129
                 3.....................44455555555555555555555555544444444443333333332 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 4e-06
   Rootletin  20 kLqaKvlqYkkrcseleqrlle..............ktselektkltlll.........ssareleeeesadleealakLeeErqrseklaqvnslLre 95 
                 +L+a v q +k+ ++++   ++               +                     ++ ++++e+ s  l++  a Lee r+r ++l+++n+ Lr 
  CCE27238.1  92 ALRAEVEQLRKQLQSIQTTHENevaqmkvdledsnsAKE----------HaeeqyqtllERVEKIKESLSGRLKRDKADLEEARERIDELEAENEELRG 180
                 79999********99985555544445555544332111..........022222334477799999999999************************** PP

   Rootletin  96 qleearqaneaLtedlqkltkdwerlreeleqkekewreeeeafneylssehs 148
                   +++    ++L+++lq  t+++++lr   +   ++w++e+e++++ +++ ++
  CCE27238.1 181 SAQATGGDVDKLKQELQDATTELSSLRSRNNLSAHNWQKEKEELTKTVQHLKD 233
                 ********************************************999887555 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.4
   Rootletin 152 sLWrevvavrrqfselksat 171
                 +LW +v+ +  q++ l+ + 
  CCE27238.1 258 NLWDKVSDLEEQLATLRRNY 277
                 58888888888888887665 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.075
   Rootletin   2 rrlqayqeaqqrqaqLvskLqaKvlqYkk.rcseleqrllektselektkltlllssareleeeesadleealakLeeErqrsekla 87 
                 r  +a       q+ Lv +Lq+ + + +  r +el + +++++s+l+ +k         + +e + +d eea + L  E +r++ ++
  CCE27238.1 275 RNYEAAAADRDSQSTLVDNLQNALREIQDaRKKELRDMVETTESQLQAHKT------LVRQAEARARDAEEAKETLTKELERTAPFE 355
                 556667777889************999862556666666665555555553......345566677777777777777777776443 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.5     0.034        25      74     109 ..      82     118 ..      77     131 .. 0.57
   2 !   17.1   1.8   5.9e-06    0.0042      44     122 ..     130     208 ..     125     210 .. 0.91
   3 ?    1.3   6.0      0.48   3.4e+02      55     111 ..     215     271 ..     193     304 .. 0.49
   4 ?    3.7   3.1     0.085        61      44     104 ..     288     349 ..     279     360 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.034
     DUF1664  74 kldeqkeiskeikeevtevredlseigedve.svkea 109
                 kl+++++  +++++ev+++r++l++i++  e +v ++
  CCE27238.1  82 KLEAMSKEREALRAEVEQLRKQLQSIQTTHEnEVAQM 118
                 5666666666666666666666666655433133333 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 5.9e-06
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 e+  +q +++ e +++ k+ Ls r++r  + l+e  e + e+++e +e+r+  +++g dv+++k+  ++  ++l+++ +
  CCE27238.1 130 EHAEEQYQTLLERVEKIKESLSGRLKRDKADLEEARERIDELEAENEELRGSAQATGGDVDKLKQELQDATTELSSLRS 208
                 55667889999*******************************************************9999999988865 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.48
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeave 111
                 ++ ++ k++L++ ++++ ++++ ++++  e +   +e r+  +++ ++v+ ++e   
  CCE27238.1 215 HNWQKEKEELTKTVQHLKDEMKTTANAMGEWEVLAMEERSIKENLWDKVSDLEEQLA 271
                 345556666666666666555555544444333222222223333333333333333 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.085
     DUF1664  44 esvskqleqvseslaat.krhLssridrvdkkldeqkeiskeikeevtevredlseigedve 104
                 +++  +l++   +++++ k++L + +++ +++l++ k + ++ ++   +++e  +++ +++e
  CCE27238.1 288 STLVDNLQNALREIQDArKKELRDMVETTESQLQAHKTLVRQAEARARDAEEAKETLTKELE 349
                 56667788888888765378999999999999999999999999888888888877777765 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4  29.2   0.00012     0.085     111     272 ..      82     243 ..      18     257 .. 0.90
   2 !    8.2  14.1    0.0023       1.6      50     147 ..     264     361 ..     239     387 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament 111 dldeatlarvdLekkvesLkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkldLteilkeiraqyeelaeknreeaeewykskleelqeaaekns 208
                 +l++ + +r  L ++ve+L+++l+  ++ he+Ev++++  ++ ++   e  +++ + L e ++ i++      ++ ++++ee  +++++el+ + e+  
  CCE27238.1  82 KLEAMSKEREALRAEVEQLRKQLQSIQTTHENEVAQMKVDLEdSNSAKEHAEEQYQTLLERVEKIKESLSGRLKRDKADLEEA-RERIDELEAENEELR 179
                 566677788999*****************************9555566666666777*************************8.889************ PP

                 XXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 209 ealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeela 272
                  +++++  ++ +l++++q  ++el+sl++ ++   ++ +  +e+l + +++l+++++   +++ 
  CCE27238.1 180 GSAQATGGDVDKLKQELQDATTELSSLRSRNNLSAHNWQKEKEELTKTVQHLKDEMKTTANAMG 243
                 ********************************99999999999999999999999998877765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0023
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  50 elyekeleelrkqldeltkerarlqleldnlreeledlrkkyekelnkr.eevEaelkalrkdldeatlarvdLekkvesLkeelaflkkvheeEvkel 147
                 +  e++l+ lr++ ++++++r+     +dnl+++l++++   +kel++  e++E++l+a +  + +a  +  d e+  e+L++el+     +e Ev+e 
  CCE27238.1 264 SDLEEQLATLRRNYEAAAADRDSQSTLVDNLQNALREIQDARKKELRDMvETTESQLQAHKTLVRQAEARARDAEEAKETLTKELER-TAPFESEVREK 361
                 556999***************************************98752778********************************95.56799999885 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8  16.5       5.1   3.7e+03      79     145 ..      80     151 ..       5     159 .. 0.56
   2 ?    8.5  25.2    0.0035       2.5      13     144 ..      98     235 ..      68     243 .. 0.55
   3 ?   16.1  14.4   1.7e-05     0.012      37     150 ..     158     283 ..     153     293 .. 0.72
   4 ?    2.5   9.7      0.25   1.8e+02      15      99 ..     294     382 ..     289     442 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 5.1
        Fez1  79 kseaellrekvekleeelkelreelselsleeeeaa.......lesdeakaqrqeaeeleelkreverlraeLk 145
                 +++ e ++++ e+l +e+++lr++l++ ++++e+++       ++s++ak+  +++e+ ++l ++ve+++++L+
  CCE27238.1  80 TAKLEAMSKEREALRAEVEQLRKQLQSIQTTHENEVaqmkvdlEDSNSAKE--HAEEQYQTLLERVEKIKESLS 151
                 333444444455555556666555555544444433344443333333333..334456666666777766665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0035
        Fez1  13 slLKqQLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleee 111
                   L++QL   q+ +t+  +e+ ++k +l + +++ e+ ee+ ++l e++e+ ++    +  +l+r k++ e  re++++le+e +elr +++++  + +
  CCE27238.1  98 EQLRKQL---QSIQTTHENEVAQMKVDLEDSNSAKEHAEEQYQTLLERVEKIKE---SLSGRLKRDKADLEEARERIDELEAENEELRGSAQATGGDVD 190
                 3344444...33445666777777777777777777777777777666644433...355666666666666666666666666666665555444444 PP

        Fez1 112 eaalesdeakaqrqe............aeeleelkreverlraeL 144
                 + ++e ++a ++ ++            ++e eel+++v++l+ e+
  CCE27238.1 191 KLKQELQDATTELSSlrsrnnlsahnwQKEKEELTKTVQHLKDEM 235
                 444333333333222333333333333344444444444444444 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 1.7e-05
        Fez1  37 kaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa............lesdeakaq 123
                 ka+l e+r++++e e+e++el+ s++    +++++++elq +++e + lr + +   +++++ +eel+++ ++ ++++            l+++e   +
  CCE27238.1 158 KADLEEARERIDELEAENEELRGSAQATGGDVDKLKQELQDATTELSSLRSRNNLSAHNWQKEKEELTKTVQHLKDEMkttanamgewevLAMEERSIK 256
                 899***************************************999999999999999999999999988776655555455555544443233332333 PP

        Fez1 124 rqeaeeleelkreverlraeLkeerqk 150
                 ++ ++++++l+++++ lr++ +     
  CCE27238.1 257 ENLWDKVSDLEEQLATLRRNYEAAAAD 283
                 333555555555555555555444444 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.25
        Fez1  15 LKqQLkdsqaevtqklseival.kaqlrelrakleekeeeikeleesleektlelevc...enelqrkkseaellrekvekleeelkel 99 
                 L + L+++q    + l ++v+   +ql+  ++ +++ e++++++ee+ e+ t+ele+    e+e+++k+     lr +   l++ l++ 
  CCE27238.1 294 LQNALREIQDARKKELRDMVETtESQLQAHKTLVRQAEARARDAEEAKETLTKELERTapfESEVREKNLLIGKLRHEGIVLNDHLTKA 382
                 66779999999999999999752688999999999999999999999999999998853336777777433333333333333333333 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  12.6     0.015        11      38     102 ..      81     149 ..      77     153 .. 0.82
   2 ?   10.0  17.8   0.00089      0.64      11      97 ..     139     236 ..     133     246 .. 0.75
   3 ?    6.7  15.2    0.0097         7      15     113 ..     252     351 ..     246     362 .. 0.83
   4 ?    0.1   9.8         1   7.5e+02       9      81 ..     295     371 ..     293     387 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.015
  CENP-F_leu_zip  38 enqekvileaEtskaevetlkeeieelae....elreleldLvalrsekeeLekelqkkqervseLesl 102
                     +++e++  e E  +aeve+l+++++ +++    e  ++++dL++  s ke+ e++ q+  erv+  +++
      CCE27238.1  81 AKLEAMSKEREALRAEVEQLRKQLQSIQTthenEVAQMKVDLEDSNSAKEHAEEQYQTLLERVEKIKES 149
                     57889999999999999999999998875222267899*******************999999988766 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00089
  CENP-F_leu_zip  11 kLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalr...........sekeeLekelqkkqe 94 
                      L ++e+ ++sL ++ ++ +++le++ e  ++++ e E+ +  +++    +++l++el++ +++L++lr           +ekeeL+k +q+ ++
      CCE27238.1 139 LLERVEKIKESLSGRLKRDKADLEEARERIDELEAENEELRGSAQATGGDVDKLKQELQDATTELSSLRsrnnlsahnwqKEKEELTKTVQHLKD 233
                     56777777777777777777777777777777777777778888888888888888888888888888777777777777999999999998888 PP

  CENP-F_leu_zip  95 rvs 97 
                     +++
      CCE27238.1 234 EMK 236
                     776 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0097
  CENP-F_leu_zip  15 serkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekel.qkkqervseLeslnsslen 108
                      ++ +++L dkv  Le +l ++ +n e++  + +++   v +l++ ++e++  +++   d+v++++ + + +k l ++   r  + e+++++l++
      CCE27238.1 252 ERSIKENLWDKVSDLEEQLATLRRNYEAAAADRDSQSTLVDNLQNALREIQDARKKELRDMVETTESQLQAHKTLvRQAEARARDAEEAKETLTK 346
                     567799********************************************998877666666666655555555526778899999999999999 PP

  CENP-F_leu_zip 109 lleek 113
                      le+ 
      CCE27238.1 347 ELERT 351
                     98875 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1
  CENP-F_leu_zip   9 lekLKeser.kadsLkdkvenLerelemsee...nqekvileaEtskaevetlkeeieelaeelreleldLvalrse 81 
                     ++ L+e++  ++  L+d ve  e++l+  +    + e+  ++aE++k+++ +  e     ++e re +l + +lr e
      CCE27238.1 295 QNALREIQDaRKKELRDMVETTESQLQAHKTlvrQAEARARDAEEAKETLTKELERTAPFESEVREKNLLIGKLRHE 371
                     56788877526788999***999999977651115555566666666665554444445566666666666666666 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.9   4.7e-05     0.034      32      75 ..      81     124 ..      66     126 .. 0.90
   2 ?    1.6   2.4      0.49   3.5e+02      22      73 ..     142     196 ..     132     197 .. 0.71
   3 ?    3.5   3.8      0.13        90       7      50 ..     190     233 ..     188     273 .. 0.63
   4 ?    3.1   0.1      0.17   1.2e+02      46      64 ..     261     279 ..     253     287 .. 0.87
   5 ?   -1.1   0.4       3.4   2.5e+03      26      41 ..     305     320 ..     285     351 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.7e-05
       Tup_N  32 lkiqsqiqElqqirqtlyeLeeahrkikqqYEeeiarLkaeLes 75 
                 +k+++  +E +++r ++ +L ++ ++i+++ E+e+a++k +Le 
  CCE27238.1  81 AKLEAMSKEREALRAEVEQLRKQLQSIQTTHENEVAQMKVDLED 124
                 6888899999********************************96 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.49
       Tup_N  22 slkaqkdeyelkiqsqiqElqqirqtlyeLeeahrkikqqYEe...eiarLkaeL 73 
                  +++ k+ +  +++   ++l+  r+ + eLe++ ++++ + +    ++ +Lk+eL
  CCE27238.1 142 RVEKIKESLSGRLKRDKADLEEARERIDELEAENEELRGSAQAtggDVDKLKQEL 196
                 456667777788888999999**********999998855443222666666666 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.13
       Tup_N   7 davkqEfdalsqeasslkaqkdeyelkiqsqiqElqqirqtlye 50 
                 d +kqE + +++e+ssl+++++   +  q+  +El++  q+l++
  CCE27238.1 190 DKLKQELQDATTELSSLRSRNNLSAHNWQKEKEELTKTVQHLKD 233
                 66778888888887777766655555566666666665555543 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.17
       Tup_N  46 qtlyeLeeahrkikqqYEe 64 
                  ++ +Lee+   ++++YE 
  CCE27238.1 261 DKVSDLEEQLATLRRNYEA 279
                 5799*************97 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 3.4
       Tup_N  26 qkdeyelkiqsqiqEl 41 
                 +k+e+  ++++  + l
  CCE27238.1 305 RKKELRDMVETTESQL 320
                 3333333333333333 PP

>> LigT_PEase  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1         1   7.3e+02       4      30 ..      97     123 ..      90     127 .. 0.79
   2 ?   -2.7   0.1       9.9   7.1e+03      54      62 ..     140     148 ..     129     168 .. 0.52
   3 ?   -1.3   0.1       3.6   2.6e+03       6      24 ..     265     283 ..     262     286 .. 0.75
   4 ?   14.0   1.0     6e-05     0.043       5      73 ..     292     360 ..     289     374 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1
                 CHHHHHHHHHHHHHHHHHHCCTTEEET CS
  LigT_PEase   4 peeiaeelarlaaeleralaklglkpv 30 
                 +e+++++l++++  +e+++a++++ ++
  CCE27238.1  97 VEQLRKQLQSIQTTHENEVAQMKVDLE 123
                 578889999999999988888776655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 9.9
                 HHHHHHHHH CS
  LigT_PEase  54 lealaeias 62 
                 le++++i +
  CCE27238.1 140 LERVEKIKE 148
                 444444422 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHHHHHCC CS
  LigT_PEase   6 eiaeelarlaaeleralak 24 
                 ++ e+la l++++e+a+a+
  CCE27238.1 265 DLEEQLATLRRNYEAAAAD 283
                 5668999999999977665 PP

  == domain 4  score: 14.0 bits;  conditional E-value: 6e-05
                 HHHHHHHHHHHHHHHHHHCCTTEEETSGGGSEEEEEEEEEESHHHHHHHHHHHHHHHHTSBEEEEEEEE CS
  LigT_PEase   5 eeiaeelarlaaeleralaklglkpvrpfnpHiTLaflgevdeekvpellealaeiasgaepfelkvdg 73 
                 ++++++l+++++  +++l+++    +   + H TL +  e ++++++e++e l +  ++++pfe +v++
  CCE27238.1 292 DNLQNALREIQDARKKELRDMVETTESQLQAHKTLVRQAEARARDAEEAKETLTKELERTAPFESEVRE 360
                 678999*********99999988888**************************************99987 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.4     0.023        16       9      66 ..      93     151 ..      81     157 .. 0.76
   2 ?    4.0   0.8     0.095        68      11      56 ..     159     208 ..     153     241 .. 0.78
   3 ?   14.0   0.8   7.4e-05     0.053      15      63 ..     258     303 ..     246     310 .. 0.89
   4 ?    0.2   0.1       1.4     1e+03      10      46 ..     310     346 ..     307     360 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.023
     NPV_P10   9 IradikavddkVdalqqqv.ddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLn 66 
                  ra+++++ ++++++q+   ++v++   d+++ n+  +   +q ++l + ve+I++ L+
  CCE27238.1  93 LRAEVEQLRKQLQSIQTTHeNEVAQMKVDLEDSNSAKEHAEEQYQTLLERVEKIKESLS 151
                 58889999999999997652334444445555677778888888999999999999887 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.095
     NPV_P10  11 adikavddkVdalqqqvddvqenlp....dvtelnekLdaqsaqLaelet 56 
                 ad ++  +++d l+++ ++++   +    dv++l+++L++ +++L +l +
  CCE27238.1 159 ADLEEARERIDELEAENEELRGSAQatggDVDKLKQELQDATTELSSLRS 208
                 67777888888888888887766653334899999999999999999875 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 7.4e-05
     NPV_P10  15 avddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqd 63 
                 ++ dkV+ l++q++ ++ n +      +  d+qs+ +++l++++ +Iqd
  CCE27238.1 258 NLWDKVSDLEEQLATLRRNYEA---AAADRDSQSTLVDNLQNALREIQD 303
                 5789****************99...45778******************8 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.4
     NPV_P10  10 radikavddkVdalqqqvddvqenlpdvtelnekLda 46 
                 r+ ++ ++++++a ++ v + ++  +d +e +e L +
  CCE27238.1 310 RDMVETTESQLQAHKTLVRQAEARARDAEEAKETLTK 346
                 7788999999999999999999999998888877754 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  18.3     0.004       2.9      53     151 ..      80     178 ..      58     179 .. 0.75
   2 ?    8.6  24.0    0.0016       1.2      43     182 ..     116     262 ..     108     272 .. 0.74
   3 ?    2.9  12.6     0.087        62      46     153 ..     267     370 ..     254     376 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.004
   Golgin_A5  53 kqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrekeiekl 151
                 +++ +++ +e ++l+ ++eqlr++lq +++ +++e+ +++  l++++++ e+ +++ +++ + +e++ke l+   +  +   ++ ++ri + e+e e+l
  CCE27238.1  80 TAKLEAMSKEREALRAEVEQLRKQLQSIQTTHENEVAQMKVDLEDSNSAKEHAEEQYQTLLERVEKIKESLSGRLKRDKADLEEARERIDELEAENEEL 178
                 455566677778888889999999999999999999999999999988888888888888888888888888666655566677777888887776666 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0016
   Golgin_A5  43 talsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelv..rskatlqs 139
                  +++++l++ ++ +++++e+ q l +++e+++  l    ++ +a+ e++re++ ele + ee r + +++  ++ +lk+el+ +  el+  rs+++l +
  CCE27238.1 116 AQMKVDLEDSNSAKEHAEEQYQTLLERVEKIKESLSGRLKRDKADLEEARERIDELEAENEELRGSAQATGGDVDKLKQELQDATTELSslRSRNNLSA 214
                 568899******************************999************************************************973345555555 PP

   Golgin_A5 140 rikdreke.....ieklrnqlttkslsssseselesRlkqLtesLiqK 182
                 +  ++eke     +++l+ +++t ++   + + l    +++ e+L  K
  CCE27238.1 215 HNWQKEKEeltktVQHLKDEMKTTANAMGEWEVLAMEERSIKENLWDK 262
                 544444322122255555555555444433333444444555555555 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.087
   Golgin_A5  46 saeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdr 144
                 + +l  l+++ +++ ++  ++++ +++l++ l+++++ +++e    r+ ++  e+ql++ +   +++ea  +  +e  ++l +el r+ a ++s+++++
  CCE27238.1 267 EEQLATLRRNYEAAAADRDSQSTLVDNLQNALREIQDARKKEL---RDMVETTESQLQAHKTLVRQAEARARDAEEAKETLTKELERT-APFESEVREK 361
                 5556667777777778888888889999999999998887665...557778888999999999999999999999999999999865.6789999999 PP

   Golgin_A5 145 ekeieklrn 153
                 +  i klr+
  CCE27238.1 362 NLLIGKLRH 370
                 988888886 PP

>> Med10  Transcription factor subunit Med10 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.6     0.003       2.2      24      61 ..      86     123 ..      62     151 .. 0.87
   2 ?    6.3   0.1     0.013         9      77     116 ..     165     204 ..     164     209 .. 0.93
   3 ?    1.3   1.7      0.45   3.3e+02      26      51 ..     254     279 ..     211     359 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.003
                 T.S-TTHHHHHHHHHHHHHHHHHHHHH..HH--EEEHH CS
       Med10  24 nessqevlaqklktlvesLqelsktaskllqdikiPle 61 
                  ++++e+l  ++++l ++Lq++++t++++++++k+ le
  CCE27238.1  86 MSKEREALRAEVEQLRKQLQSIQTTHENEVAQMKVDLE 123
                 33899**********************99999988765 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGH CS
       Med10  77 refvelvrrkNqlmkGkmeafkkfrdvLaeelekalPelr 116
                 re ++++ ++N++++G  +a     d L +el++a +el+
  CCE27238.1 165 RERIDELEAENEELRGSAQATGGDVDKLKQELQDATTELS 204
                 89999******************************99986 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.45
                 S-TTHHHHHHHHHHHHHHHHHHHHH. CS
       Med10  26 ssqevlaqklktlvesLqelsktask 51 
                 s +e l +k+++l+e+L++l ++ ++
  CCE27238.1 254 SIKENLWDKVSDLEEQLATLRRNYEA 279
                 55555555555555555555554443 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   6.4    0.0025       1.8      12      84 ..      83     152 ..      77     157 .. 0.83
   2 ?   11.0   3.2   0.00046      0.33       1      81 [.     128     209 ..     128     212 .. 0.88
   3 ?    7.3   6.2    0.0061       4.4      11     104 ..     213     306 ..     208     308 .. 0.90
   4 ?    3.5   1.5     0.093        67      29      69 ..     309     349 ..     307     363 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0025
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH CS
  Laminin_II  12 akevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleea 84 
                 +++  +  ++l +++e+++++l++i+++    +++v +++  ++d +++  + e++ + Ll++++++k+  ++
  CCE27238.1  83 LEAMSKEREALRAEVEQLRKQLQSIQTT---HENEVAQMKVDLEDSNSAKEHAEEQYQTLLERVEKIKESLSG 152
                 5566677889999999999999999999...666788888889999999999999999999999999987665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00046
                 XXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHH CS
  Laminin_II   1 skelaaeanet.akevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkql 81 
                 +ke a+e  +t ++ v+++++ ls +l++ k++l+e+++ ++e +++ +++    +  +  v kL++++++    l++l+ +
  CCE27238.1 128 AKEHAEEQYQTlLERVEKIKESLSGRLKRDKADLEEARERIDELEAENEELRGSAQATGGDVDKLKQELQDATTELSSLRSR 209
                 577777776662578******************************************************9999999998776 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0061
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHHHHHHHH CS
  Laminin_II  11 takevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikelIaqARk 104
                 +a + ++ +++l + ++++k+++++ ++ + e + ++ +   + +   ++v++Le+++  L    +     ++ +s+l dn+++    I+ ARk
  CCE27238.1 213 SAHNWQKEKEELTKTVQHLKDEMKTTANAMGEWEVLAMEERSIKENLWDKVSDLEEQLATLRRNYEAAAADRDSQSTLVDNLQNALREIQDARK 306
                 67788999999999999999999999999999999999999999999999999999999999999999999999777*******9999*****8 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.093
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTT CS
  Laminin_II  29 tkeklseinrsveetnekvkdankairdArrsvkkLeklap 69 
                 +++ +++ +++++  + +v++a    rdA+++  +L+k+++
  CCE27238.1 309 LRDMVETTESQLQAHKTLVRQAEARARDAEEAKETLTKELE 349
                 45555666666666666777777777777777777777665 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.0    0.0034       2.5      23      89 ..      91     156 ..      85     173 .. 0.87
   2 ?    4.0   2.2     0.066        47      39      86 ..     188     238 ..     158     244 .. 0.77
   3 ?    9.4   2.3    0.0014         1      31      94 ..     254     320 ..     247     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0034
  Baculo_PEP_C  23 nairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtn 89 
                   +a+r+   q+  ql+++ ++ e+++ +++ dl++ +++ +++ +++ ++L + + +++++l+ +L+ 
    CCE27238.1  91 EALRAEVEQLRKQLQSIQTTHENEVAQMKVDLED-SNSAKEHAEEQYQTLLERVEKIKESLSGRLKR 156
                   578899999999999999999999***9999999.88899999999999999999999999998875 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.066
  Baculo_PEP_C  39 lldaietqLnalsedlksllaeldt...rldtlltnLtdalnalqdtlrne 86 
                   ++d+++++L++ +++l+sl +  +    + ++  ++Lt+++++l+d++++ 
    CCE27238.1 188 DVDKLKQELQDATTELSSLRSRNNLsahNWQKEKEELTKTVQHLKDEMKTT 238
                   578888888888888888765433355688889999999999999887764 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0014
  Baculo_PEP_C  31 qilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq....dtlrneLtnlnsil 94 
                   +i  +l   + ++e+qL +l  + +++ a+ d++ +tl++nL++al ++q    ++lr   ++++s+l
    CCE27238.1 254 SIKENLWDKVSDLEEQLATLRRNYEAAAADRDSQ-STLVDNLQNALREIQdarkKELRDMVETTESQL 320
                   5677888899999**********99999988776.89*************555555666666666665 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2  29.2   6.5e-06    0.0047     625     834 ..      18     222 ..       3     226 .. 0.71
   2 ?    4.0   9.6     0.016        11     729     828 ..     193     287 ..     189     297 .. 0.82
   3 ?   -5.1  18.5       8.6   6.2e+03     692     816 ..     230     347 ..     211     365 .. 0.43

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.5e-06
         FPP 625 ldvssmeeeikksddidkvalsenkvaqk.gessnecaeisklssekeipselplvsgsneskkeenkllkeeleelksekenlevelksatenleslk 722
                 ++++++++++ +s+  d + ls+ +++ + +e+       ++ +se++ p+e+  +++  + +++     + +le +  e+e l +e+++  ++l+s++
  CCE27238.1  18 KKKNNKKKKNASSKGKDATGLSNGEALPAtEEH------GNDDESETDAPEESRETDS--HVDSAPDSDPTAKLEAMSKEREALRAEVEQLRKQLQSIQ 108
                 333344444455555666666666664441333......2233333333333333333..222444555677889999999999999999999999987 PP

         FPP 723 aqlqesEqllaelkseLeslkeskslaetq....lkcmkesyesletrateleaelnelkqkieaLeveLeeekksheeleakckelqeqlervekkev 817
                 +     E+ +a++k +Le ++ +k+ ae+q    l+  + ++esl+ r++  +a+l+e++++i++Le+e ee + s + +   + +l++ l+ ++++ +
  CCE27238.1 109 T---THENEVAQMKVDLEDSNSAKEHAEEQyqtlLERVEKIKESLSGRLKRDKADLEEARERIDELEAENEELRGSAQATGGDVDKLKQELQDATTELS 204
                 5...57899********************94444467889*****************************************************997776 PP

         FPP 818 s.kssaeeedkklkqeke 834
                 s +s  + + ++ ++eke
  CCE27238.1 205 SlRSRNNLSAHNWQKEKE 222
                 644444445555666655 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.016
         FPP 729 EqllaelkseLeslkeskslaetqlkcmkesyesletrateleaelnelkqkieaLeveLeeekksheeleakckelqeqlervekkevskssaeeedk 827
                  q l++ ++eL+sl+  ++l  +  +++   +e+l    ++l++e++   + + + ev   ee+++ e+l  k+ +l+eql + ++  + ++ a++ d+
  CCE27238.1 193 KQELQDATTELSSLRSRNNLSAHNWQKE---KEELTKTVQHLKDEMKTTANAMGEWEVLAMEERSIKENLWDKVSDLEEQLATLRR--NYEAAAADRDS 286
                 588999999**********999955554...56788999999****************99*********************99974..33444455444 PP

         FPP 828 k 828
                 +
  CCE27238.1 287 Q 287
                 4 PP

  == domain 3  score: -5.1 bits;  conditional E-value: 8.6
         FPP 692 llkeeleelksekenlevelksatenleslkaqlqesEqllaelkseLeslkeskslaetqlkcmkesyesletratele.aelnelkqkieaLeveLe 789
                 +lk+e++       + ev   ++ +  e+l         ++++l+++L++l++  + a  + ++++++  +l+  ++e++ a  +el+  +e+ e++L+
  CCE27238.1 230 HLKDEMKTTANAMGEWEVLAMEERSIKENLWD-------KVSDLEEQLATLRRNYEAAAADRDSQSTLVDNLQNALREIQdARKKELRDMVETTESQLQ 321
                 22222222222222222222222222222222.......344444445544444444444444444444444444444431233455555666666666 PP

         FPP 790 eekksheeleakckelqeqlervekke 816
                  +k+  +++ea+ ++ +e  e+ +k e
  CCE27238.1 322 AHKTLVRQAEARARDAEEAKETLTK-E 347
                 6666666666666666666666543.2 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  13.3    0.0024       1.7      30     100 ..      82     150 ..      78     156 .. 0.78
   2 ?   13.2  11.4   8.1e-05     0.058      22     112 ..     152     236 ..     147     240 .. 0.80
   3 ?   -0.5  19.3       1.3   9.4e+02      40     188 ..     223     379 ..     222     382 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0024
    KASH_CCD  30 avetaeetnakLteeieeLkkklkstQqalqka.klleeEleelkalvkeleEkrarlkaqnkqlekenqsL 100
                 ++e++  + + L +e+e+L+k+l+s Q + +++   ++ +le+     ++ eE+ + l  +   +ek ++sL
  CCE27238.1  82 KLEAMSKEREALRAEVEQLRKQLQSIQTTHENEvAQMKVDLEDSNSAKEHAEEQYQTLLER---VEKIKESL 150
                 689999999*******************998762457888888888888888877777655...45555555 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 8.1e-05
    KASH_CCD  22 eenskLkkavetaeetnakLteeieeLkkklkstQqalqkaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeeni 112
                 +  ++ k+ +e a e    L +e+eeL++ ++    +      l++El+++ + +++l  +r++l+a+n+q ek  + L++ +++L++e++
  CCE27238.1 152 GRLKRDKADLEEARERIDELEAENEELRGSAQ---ATGGDVDKLKQELQDATTELSSLR-SRNNLSAHNWQKEK--EELTKTVQHLKDEMK 236
                 5555667889999999999*********9665...5566667799***********998.56789*****9555..579999999999865 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.3
    KASH_CCD  40 kLteeieeLkkklkstQqalqkaklleeEleelka....lvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekdelkkklkeLlkekae 134
                  Lt  +++Lk  +k t  a+ + ++l+ E   +k+     v++leE+ a l  + + +  +++s ++ +++Lq+ ++ ++    + kk l+++++++  
  CCE27238.1 223 ELTKTVQHLKDEMKTTANAMGEWEVLAMEERSIKEnlwdKVSDLEEQLATLRRNYEAAAADRDSQSTLVDNLQNALREIQD---ARKKELRDMVETT-- 316
                 589999********************99976555411116899********999998888888888999999998876653...3333344433333.. PP

    KASH_CCD 135 Lkkqlheleellaekeall..........eektkqieeLkltieEyssiieeLraeksrLeeql 188
                   +ql+  ++l+ + ea +          ++  +++  +++ + E +  i +Lr e   L+++l
  CCE27238.1 317 -ESQLQAHKTLVRQAEARArdaeeaketlTKELERTAPFESEVREKNLLIGKLRHEGIVLNDHL 379
                 .334433444444444443000000000033333444445566777777777777766666665 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  14.3   0.00073      0.52      56     140 ..      83     168 ..      76     169 .. 0.89
   2 ?    8.2  10.7    0.0019       1.4      35     124 ..     154     244 ..     148     257 .. 0.81
   3 ?    0.8  13.2      0.38   2.7e+02      21     117 ..     256     350 ..     252     363 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00073
         GAS  56 nkrlkepLkkaeeeveeLrkqlknyek.dkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqkt 140
                  + ++++ +++++eve+Lrkql+  +  + ++ +++k  l+++++  ++ +++++ l +r+ek++++     k+ +a ++e+++++
  CCE27238.1  83 LEAMSKEREALRAEVEQLRKQLQSIQTtHENEVAQMKVDLEDSNSAKEHAEEQYQTLLERVEKIKESLSGRLKRDKADLEEARERI 168
                 5678888899*************987626789***********************************9999999999999988775 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0019
         GAS  35 ieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlk.arlkelekelkdlkwehevleqrfekvekerde 124
                 +++ k+  e+++ +++e+++en++l+   ++   +v++L+++l++   + +sl++ +    ++ +ke ++l+   + l++++++  ++  e
  CCE27238.1 154 LKRDKADLEEARERIDELEAENEELRGSAQATGGDVDKLKQELQDATTELSSLRSRNnLSAHNWQKEKEELTKTVQHLKDEMKTTANAMGE 244
                 5566777888999999999999999999999999999999999999999999987651567788999999999999999999887776655 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.38
         GAS  21 trnNLelIkslKeeieelkkkeernekelseisqenkrlkepLkkaeee.veeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfek 117
                  +n  +++  l e++++l+++ e++  + +  s+   +l+  L++ +   ++eLr  +++ e+   +l++ k+ ++++e   +d ++ +e l +++e+
  CCE27238.1 256 KENLWDKVSDLEEQLATLRRNYEAAAADRDSQSTLVDNLQNALREIQDArKKELRDMVETTES---QLQAHKTLVRQAEARARDAEEAKETLTKELER 350
                 444447788899999999999999988888888888888888887765414567766666665...77777788888888888888888888877765 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  19.4   0.00077      0.55      38     180 ..     270     392 ..     244     395 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00077
       ATG16  38 naklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyk.srgelaqrllelneelqkleeklkedeerlaeleaeraal 135
                  a+l                        + + ++ +a+  s+++++  l++ l e +  ++ el +++ +++++lq+ ++  ++ e+r +++e+ +++l
  CCE27238.1 270 LATL------------------------RRNYEAAAADRDSQSTLVDNLQNALREIQDaRKKELRDMVETTESQLQAHKTLVRQAEARARDAEEAKETL 344
                 2222........................33333444555677777778888888887525689************************************ PP

       ATG16 136 etklkdr...eeelrekeklvqdlqDElsaLqlqlnqaEeklrklekE 180
                 +++l++    e e+rek+ l+ +l+ E + L+ +l++a   l+k++ E
  CCE27238.1 345 TKELERTapfESEVREKNLLIGKLRHEGIVLNDHLTKALRYLKKTKPE 392
                 ***998744479**********************99998888887765 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.7     0.011       7.7       8      35 ..      82     109 ..      80     113 .. 0.88
   2 ?    2.9   0.9       0.2   1.5e+02       8      37 ..     121     150 ..     110     155 .. 0.73
   3 ?    2.3   0.1      0.32   2.3e+02       9      27 ..     161     179 ..     152     184 .. 0.69
   4 ?    4.8   3.3     0.052        37       2      34 ..     189     232 ..     188     238 .. 0.48
   5 ?    2.3   0.2       0.3   2.2e+02       7      24 ..     261     278 ..     257     328 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.011
   FlaC_arch   8 klsklsteletvkkeneelsksveelke 35 
                 kl+ +s e e +++e e+l+k+++ ++ 
  CCE27238.1  82 KLEAMSKEREALRAEVEQLRKQLQSIQT 109
                 789999999999*********9999986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.2
   FlaC_arch   8 klsklsteletvkkeneelsksveelkenV 37 
                 +l++  +  e ++++ + l + ve++ke+ 
  CCE27238.1 121 DLEDSNSAKEHAEEQYQTLLERVEKIKESL 150
                 455555566778899999999999999875 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.32
   FlaC_arch   9 lsklsteletvkkeneels 27 
                 l++   +++ +++eneel+
  CCE27238.1 161 LEEARERIDELEAENEELR 179
                 5555557777777777776 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.052
   FlaC_arch   2 idelEnklsklsteletvkken...........eelsksveelk 34 
                 +d+l ++l++  tel+++++ n           eel k+v+ lk
  CCE27238.1 189 VDKLKQELQDATTELSSLRSRNnlsahnwqkekEELTKTVQHLK 232
                 56677777777776666655551111000000055555555555 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.3
   FlaC_arch   7 nklsklsteletvkkene 24 
                  k+s+l+ +l+t++++ e
  CCE27238.1 261 DKVSDLEEQLATLRRNYE 278
                 577777777777777665 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  23.3    0.0025       1.8       9     153 ..      87     239 ..      80     261 .. 0.87
   2 ?    3.1   7.1     0.091        65      98     194 ..     258     350 ..     244     381 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        SHE3   9 HeqiDaLtktnlqLtqqsqeLleklelaqkkeskflenlaslk.hENdnLsslLkRKer.......rlkdlekelselkesveelklekkqlkkrlens 99 
                  ++  aL  ++ qL++q q +   +e+  ++ +  le+ +s+k h  ++ ++lL+R e+       rlk    +l+e +e+++el++e+++l+  ++ +
  CCE27238.1  87 SKEREALRAEVEQLRKQLQSIQTTHENEVAQMKVDLEDSNSAKeHAEEQYQTLLERVEKikeslsgRLKRDKADLEEARERIDELEAENEELRGSAQAT 185
                 555578889999*******999999999999999999999998678899*******88766667779999999************************** PP

                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS CS
        SHE3 100 saseteleeelerlkvqYdalvdsqkeYkehYqqeieeLkesleklklenekql 153
                      +l++el+    +  +l   ++   + +q+e eeL + +++lk e + + 
  CCE27238.1 186 GGDVDKLKQELQDATTELSSLRSRNNLSAHNWQKEKEELTKTVQHLKDEMKTTA 239
                 *********************9999999999****************9988554 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.091
                 HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SHE3  98 nssaseteleeelerlkvqYdalvdsqkeYkehYqqeieeLkesleklklenekqleelqerissndkdidtkldsynnkkknlesieeeknkkllk 194
                 n+ ++ ++lee+l  l+ +Y+a  +     ++  ++ +++L+++l + +  ++k+l ++ e++ s+ ++ +t++ + + + ++ e+++e+ +k+l++
  CCE27238.1 258 NLWDKVSDLEEQLATLRRNYEAAAA----DRDSQSTLVDNLQNALREIQDARKKELRDMVETTESQLQAHKTLVRQAEARARDAEEAKETLTKELER 350
                 4555555666666666666665433....35566666666777776666666666666666666666666666666666666666666666666654 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  18.1    0.0017       1.2     131     266 ..      79     213 ..      76     234 .. 0.49
   2 ?    1.2  15.2      0.32   2.3e+02     140     257 ..     219     349 ..     213     399 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0017
  Exonuc_VII_L 131 PtaaAelvvpdkaeleeqleelerrlekaik...rlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.k. 222
                   Pta  e+++++++ l++++e+l+++l++  +   + + + k  le  +s+ +++ee++++  +r+++++e+l+     +lk+ +++lee++er+ + 
    CCE27238.1  79 PTAKLEAMSKEREALRAEVEQLRKQLQSIQTtheNEVAQMKVDLEDSNSAKEHAEEQYQTLLERVEKIKESLSG----RLKRDKADLEEARERIdEl 171
                   99*************99999999988765441113333333344444333345555555555555555554444....5555555555555444221 PP

  Exonuc_VII_L 223 ...............ekleekkerlkklkerlelleekkerleeleeklealsplkvLk 266
                                                     +++ k++l+ ++++l++l  ++ L+
    CCE27238.1 172 eaeneelrgsaqatgG-----------------DVDKLKQELQDATTELSSLRSRNNLS 213
                   1111123333333331.................34444444444444444443333332 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.32
  Exonuc_VII_L 140 pdkaeleeqleelerrlekaikrll.............eekkqrleklasrl...kspeellerkrqrldeleerleralkkqlkkkrerleelker 220
                   ++k+el++++++l++++++ ++ +              e+   +++ l+++l   +++ e  +++r++ + l ++l++al++  ++++++l+ + e+
    CCE27238.1 219 KEKEELTKTVQHLKDEMKTTANAMGewevlameersikENLWDKVSDLEEQLatlRRNYEAAAADRDSQSTLVDNLQNALREIQDARKKELRDMVET 315
                   6678888888888888777775433444444333333322223333333333222333333333344444444444444444444444444444433 PP

  Exonuc_VII_L 221 lkekleekkerlkklkerlelleekkerleeleekle 257
                   ++++l+++k+ +++ ++r + +ee+ke+l+   ++le
    CCE27238.1 316 TESQLQAHKTLVRQAEARARDAEEAKETLT---KELE 349
                   334444444444444444443333333333...2222 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  11.1     0.011       7.9      25     119 ..      85     176 ..      83     206 .. 0.55
   2 ?    1.9   4.1      0.33   2.4e+02      36     121 ..     188     273 ..     175     279 .. 0.50
   3 ?    5.4   6.0     0.028        20      22      96 ..     255     329 ..     254     362 .. 0.76
   4 ?    5.2   2.5     0.031        22      45     109 ..     307     370 ..     291     388 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                 CCCCCCCCCCHHHCCCCCCCCCCCCHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  25 lllkyekdvkkdlekleneleeisnstk.eaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiq 119
                 +++k ++ ++ ++e+l+++l++i+ +++ e+ ++ ++++ds  +k++ +++    ++ + +++e+  + l  ++++    +++ ++ ++++e + +
  CCE27238.1  85 AMSKEREALRAEVEQLRKQLQSIQTTHEnEVAQMKVDLEDSNSAKEHAEEQ----YQTLLERVEKIKESLSGRLKRDKADLEEARERIDELEAENE 176
                 689999999*************99876414555555566555555444444....33333333333333333333333333333333333333322 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.33
                 HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH.HHHCCH.HHHH.HHHHHHHHHHHHHHHH CS
   Fib_alpha  36 dlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlke.tidaqe.snir.vLqnvlesneqkiqkL 121
                 d++kl++el++++ + ++ ++  +   + +++++   ++ +++++++++e+++  + + e ++ a e ++i+ +L + ++++e++++ L
  CCE27238.1 188 DVDKLKQELQDATTELSSLRSRNNLSAHNWQKEK---EELTKTVQHLKDEMKTTANAMGEwEVLAMEeRSIKeNLWDKVSDLEEQLATL 273
                 6666666666665555555555444333333333...3334566666666665555443213444443444313555555555544444 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.028
                 HHHCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHCCCHHHHH CS
   Fib_alpha  22 lqdlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn.dnvikksskeleeeilrlket 96 
                 +++ l ++ +d++++l++l+++ e ++    + ++lv ++++ lre q   k++   +++  +++l+  + +l ++
  CCE27238.1 255 IKENLWDKVSDLEEQLATLRRNYEAAAADRDSQSTLVDNLQNALREIQDARKKElRDMVETTESQLQ-AHKTLVRQ 329
                 6677777888999999999999999999999999999999999999999888777888888888888.44444444 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.031
                 CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHH CS
   Fib_alpha  45 eeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqn 109
                 +e++++ +++e+  ++ k+ +r++++ ++d +++ + ++kele + + ++ ++ ++   i +L+ 
  CCE27238.1 307 KELRDMVETTESQLQAHKTLVRQAEARARDAEEAKETLTKELE-RTAPFESEVREKNLLIGKLRH 370
                 3344455556666666666677777777777999999999999.999999999998888877775 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8  52.0     0.095        68     232     513 ..      75     349 ..      46     414 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.095
     DUF3584 232 ediqalaaiekvrpeieklqeefeqleslelrLsllkgelkadeerlaekqeevqeakaelkqqlrtledelkeaidelnqelsaakaklaakeselea 330
                  d++ +a++e++ +e e l +e+eql   ++++++++ +   +  +++  +e+ + ak++ ++q +tl + +++ ++ l+++l+  ka+l+++++++++
  CCE27238.1  75 PDSDPTAKLEAMSKEREALRAEVEQLRKQLQSIQTTHEN---EVAQMKVDLEDSNSAKEHAEEQYQTLLERVEKIKESLSGRLKRDKADLEEARERIDE 170
                 5899999***************99999888888888865...5667889999999******************************************** PP

     DUF3584 331 leeqkkkyeda......dieklkadldqlpsirseleeleeeldaltekhqdvqekydrrkqkikeeleeeleklkerleaireekdrlkaaieealea 423
                 le+++++   +      d++klk++l       +el+ l  + ++   + q+ +e++ + +q +k+e+++  + + e +    ee+   k++  ++++ 
  CCE27238.1 171 LEAENEELRGSaqatggDVDKLKQELQ---DATTELSSLRSRNNLSAHNWQKEKEELTKTVQHLKDEMKTTANAMGEWEVLAMEERSI-KENLWDKVSD 265
                 **9998876431111223444444333...2334455555555555555555555555555555555555444444443222333222.3333333333 PP

     DUF3584 424 lesqlrkqleaqkeelneeekelesrlselklrldsatateEeleqieead..ealekaqeelekaeaevealqaeeeqlrkkrdeadealq 513
                 le+ql          l+++ +  +   +++ +++d+ +    e ++ ++++  + +e  +++l++ +  v++++a  + +++++++  + l+
  CCE27238.1 266 LEEQLA--------TLRRNYEAAAADRDSQSTLVDNLQNALREIQDARKKElrDMVETTESQLQAHKTLVRQAEARARDAEEAKETLTKELE 349
                 333332........222222233333333333333333333333322222100223333333333333333333333333333332222222 PP

>> CdvA  CdvA-like coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  15.5     0.029        21      29     120 ..      85     180 ..      79     183 .. 0.71
   2 ?    7.6   0.5    0.0046       3.3       6      45 ..     203     242 ..     200     246 .. 0.89
   3 ?    6.4   0.2      0.01       7.3      34      62 ..     248     276 ..     243     283 .. 0.88
   4 ?    1.0   5.4      0.49   3.5e+02      33     102 ..     290     359 ..     276     376 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.029
        CdvA  29 ealkklkekakelkeklkkrlkeledq.ikslekalanlkisyasGEidEeaYksaieairellesa....leekeeikklleklskleleeeevee 120
                   +k+ ++ ++e+ e+l+k+l++++    +++++  ++l+ s  + E  Ee+Y++  e +++ +es+    ++ k++++++ e++++le+e+ee + 
  CCE27238.1  85 AMSKEREALRAEV-EQLRKQLQSIQTThENEVAQMKVDLEDSNSAKEHAEEQYQTLLERVEKIKESLsgrlKRDKADLEEARERIDELEAENEELRG 180
                 3333333333333.445555555554314567777899999********************999986222267899****************99765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0046
        CdvA   6 LeeLvsegdipkstyeeikekleealkklkekakelkekl 45 
                 L  L s+++++++  ++ ke+l+++++ lk+++k+ ++ +
  CCE27238.1 203 LSSLRSRNNLSAHNWQKEKEELTKTVQHLKDEMKTTANAM 242
                 778999***************************9988776 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.01
        CdvA  34 lkekakelkeklkkrlkeledqiksleka 62 
                 l  ++  +ke+l  ++++le+q+++l + 
  CCE27238.1 248 LAMEERSIKENLWDKVSDLEEQLATLRRN 276
                 788999*******************9886 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.49
        CdvA  33 klkekakelkeklkkrlkeledqikslekalanlkisyasGEidEeaYksaieairellesaleekeeik 102
                  +++ +++l+e  ++r kel+d ++++e+ l + k    + E   ++ ++a+e ++++le++    +e++
  CCE27238.1 290 LVDNLQNALREIQDARKKELRDMVETTESQLQAHKTLVRQAEARARDAEEAKETLTKELERTAPFESEVR 359
                 5556677788888888888888888888888888888888888888888888888888877765555555 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.9   0.00034      0.24      19      43 .]      81     105 ..      80     105 .. 0.90
   2 ?   -1.8   0.1       5.5   3.9e+03      31      40 ..     139     148 ..     133     163 .. 0.50
   3 ?    1.6   0.4      0.45   3.2e+02      20      32 ..     167     179 ..     158     184 .. 0.82
   4 ?    1.2   0.4      0.62   4.5e+02      20      40 ..     188     208 ..     187     211 .. 0.84
   5 ?    5.2   1.3     0.034        25      25      42 ..     218     235 ..     211     236 .. 0.88
   6 ?    4.4   0.3     0.064        46       3      23 ..     266     286 ..     262     303 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00034
        HALZ  19 sdydsLkkenekLkaelqeLkeklq 43 
                 ++ +++ ke+e+L+ae+++L+++lq
  CCE27238.1  81 AKLEAMSKEREALRAEVEQLRKQLQ 105
                 567999***************9986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.5
        HALZ  31 LkaelqeLke 40 
                 L+  +++ ke
  CCE27238.1 139 LLERVEKIKE 148
                 3333333333 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.45
        HALZ  20 dydsLkkenekLk 32 
                 + d L++ene+L+
  CCE27238.1 167 RIDELEAENEELR 179
                 679999***9997 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.62
        HALZ  20 dydsLkkenekLkaelqeLke 40 
                 d+d Lk+e +   +el +L++
  CCE27238.1 188 DVDKLKQELQDATTELSSLRS 208
                 679999999999999999987 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.034
        HALZ  25 kkenekLkaelqeLkekl 42 
                 +ke+e+L + +q Lk+ +
  CCE27238.1 218 QKEKEELTKTVQHLKDEM 235
                 89*************976 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.064
        HALZ   3 LErDYdvLKasYdaLksdyds 23 
                 LE   ++L+++Y+a ++d ds
  CCE27238.1 266 LEEQLATLRRNYEAAAADRDS 286
                 6667789*********99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3514  (0.195995); expected 358.6 (0.02)
Passed bias filter:                      846  (0.0471861); expected 358.6 (0.02)
Passed Vit filter:                       216  (0.0120475); expected 17.9 (0.001)
Passed Fwd filter:                       136  (0.00758548); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 2.23u 0.46s 00:00:02.69 Elapsed: 00:00:00.68
# Mc/sec: 2349.32
//
Query:       CCE27239.1  [L=365]
Description: related to RNA binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-16   60.0   0.0    3.9e-16   58.6   0.0    1.8  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
     0.0069   16.0   0.0      0.017   14.7   0.0    1.7  1  RRM_5     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
        7.8    6.4  16.0       0.85    9.6   3.1    2.2  2  FAM60A    Protein Family FAM60A


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   6.6e-20   3.9e-16       1      69 [.     145     214 ..     145     215 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 6.6e-20
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +++g +p+   e++++++Fs+fGp+++++l+r+ +tg sk fafVeFe ++ Ae   ++++++ l g+ l
  CCE27239.1 145 VYIGRIPHGFYEHQMRQYFSQFGPVSRVRLSRNkKTGASKHFAFVEFEESSTAEIVAKTMDNYLLFGHIL 214
                 8**************************************************************9999876 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.8e-06     0.017      43     111 ..     158     230 ..     128     237 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.8e-06
       RRM_5  43 klFnlfclYgnvervkflktkk.....etalvqmgdasaveravqHLnnaklfgkrlevalSKqqavsekepfe 111
                 ++   f+++g v+rv++ ++kk       a+v+  ++s +e   + + n  lfg+ l+ ++  + +v +k+ f+
  CCE27239.1 158 QMRQYFSQFGPVSRVRLSRNKKtgaskHFAFVEFEESSTAEIVAKTMDNYLLFGHILKCKIIPKAQV-HKDLFK 230
                 556779**************9732222468*************************999887666664.555555 PP

>> FAM60A  Protein Family FAM60A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.1   0.00014      0.85      87     158 ..      27      97 ..       4     203 .. 0.66
   2 ?    2.8   5.1     0.017     1e+02      99     169 ..     254     337 ..     224     346 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00014
      FAM60A  87 slaklkkkekkesskkieekfekklkkkkklkktkakasdasssereaspassdsasedsdesedeeekkrk 158
                 s++k+k ++k+  s  + ek +k +k  k++ k+++++++++++++++   +   +s++sd++++e+ k   
  CCE27239.1  27 SIKKQKPTKKAAPSPRVTEKSTKAAKPLKAVAKKEVQKEEKDDEDKDEGVLEMADNSDNSDDEDNENVK-DL 97 
                 667777777777777777777787777777777666666665554444443333323333322222222.22 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.017
      FAM60A  99 sskkieekfekklkkkkklkktkakasda.................sssereaspassdsasedsdesedeeekkrkkllekkkkrsa 169
                 s++  e k++k+++k+    k++ak +d+                 +  + +a+ ++ ++++ed++e+ ++e+ k+++ ++kk+k++a
  CCE27239.1 254 SESAWEAKVSKEQRKRA---KQAAKLKDIgyefeapdlktvptpqpA-AAAAATESTGEKPAEDEEEAPKKESAKKETAASKKSKTKA 337
                 22222222222222222...222222222233434455555554421.2222222223355666666666665555555554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1600  (0.0892409); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 2492.81
//
Query:       CCE27240.1  [L=117]
Description: uncharacterized protein CPUR_00712 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-08   32.4   5.3    1.9e-05   24.0   1.3    2.1  2  SMN       Survival motor neuron protein (SMN)


Domain annotation for each model (and alignments):
>> SMN  Survival motor neuron protein (SMN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.3   8.4e-06      0.15       7      36 ..      12      41 ..       8      61 .. 0.80
   2 !   24.0   1.3   1.1e-09   1.9e-05     209     252 ..      72     113 ..      33     117 .] 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.4e-06
         SMN  7 diwddtalikaydkavasfknalkngdcae 36
                ++wdd+ali +++ a+a +k   + ++++ 
  CCE27240.1 12 EVWDDSALIDSWNEALAEYKLQSQTQESTP 41
                79*****************98777666553 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 1.1e-09
         SMN 209 plipppppmspdageddealgsmliawymsgyhtgyylglkqgr 252
                  + ppp  +    +  de l  +l++wy +gy+tg y g +q  
  CCE27240.1  72 SMAPPPQALL--GSIGDEGLKKLLMSWYYAGYYTGLYEGQQQQS 113
                 4666665555..45679**********************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 907.27
//
Query:       CCE27241.1  [L=61]
Description: uncharacterized protein CPUR_00713 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-09   36.8  14.7    5.3e-09   36.8  14.7    2.2  2  4F5        4F5 protein family
  ------ inclusion threshold ------
       0.89   10.1   6.2        1.3    9.5   6.2    1.3  1  DFRP_C     DRG Family Regulatory Proteins, Tma46


Domain annotation for each model (and alignments):
>> 4F5  4F5 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8  14.7   5.9e-13   5.3e-09       1      36 [.       1      36 [.       1      37 [. 0.98
   2 ?    0.3   3.2      0.15   1.3e+03      15      24 ..      48      58 ..      40      61 .] 0.42

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 5.9e-13
                ---SGGGTTTSTTT---SS...SS-SS-SS----TT CS
         4F5  1 MtRGnQRdqaRernqKKaaeqkgkgaksglkaaera 36
                M+RGnQRd aRe +qKK a++k++++ sg+++++++
  CCE27241.1  1 MARGNQRDKAREAAQKKLASMKKGNGMSGTEMQRAK 36
                **********************************99 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.15
                ---SS....SS CS
         4F5 15 qKKaaeqk.gk 24
                +   a+++ ++
  CCE27241.1 48 AAAEAKKAeTA 58
                33333222333 PP

>> DFRP_C  DRG Family Regulatory Proteins, Tma46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   6.2   0.00015       1.3      33      77 ..       6      53 ..       3      61 .] 0.66

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00015
      DFRP_C 33 krlekkeaeeekeekkkkkeglsGrelf...efnpelaedddeeeeee 77
                +r + +ea+++k ++ kk +g+sG e+    e++ e+ ++++ ++e++
  CCE27241.1  6 QRDKAREAAQKKLASMKKGNGMSGTEMQrakESAAEIMRAKQAAAEAK 53
                45667777778878888888*******955544455555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1585  (0.0884043); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 506.82
//
Query:       CCE27242.1  [L=169]
Description: uncharacterized protein CPUR_00714 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1371.95
//
Query:       CCE27243.1  [L=308]
Description: uncharacterized protein CPUR_00715 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2334.57
//
Query:       CCE27244.1  [L=50]
Description: uncharacterized protein CPUR_00716, partial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   11.5   1.3        8.2    5.9   1.6    2.7  1  GETHR     GETHR pentapeptide repeat (5 copies)


Domain annotation for each model (and alignments):
>> GETHR  GETHR pentapeptide repeat (5 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   1.6   0.00046       8.2       6      17 ..      17      28 ..       7      46 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00046
       GETHR  6 GETvRGETvRGE 17
                GE + GE + GE
  CCE27244.1 17 GEKKNGEKKNGE 28
                333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 412.45
//
Query:       CCE27245.1  [L=168]
Description: uncharacterized protein CPUR_00717 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1368.69
//
Query:       CCE27246.1  [L=258]
Description: uncharacterized protein CPUR_00718 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 2109.38
//
Query:       CCE27247.1  [L=312]
Description: probable nicotinate-nucleotide pyrophosphorylase (carboxylating) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-58  195.6   0.3      6e-58  195.3   0.3    1.1  1  QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal
    1.4e-15   57.1   0.0    1.6e-14   53.7   0.0    2.7  2  QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal
     0.0037   17.1   0.0     0.0051   16.6   0.0    1.2  1  PRAI       N-(5'phosphoribosyl)anthranilate (PRA) isomerase


Domain annotation for each model (and alignments):
>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.3   0.3     1e-61     6e-58       1     169 []     135     309 ..     135     309 .. 0.98

  Alignments for each domain:
  == domain 1  score: 195.3 bits;  conditional E-value: 1e-61
                 HHHHHHHHHHHHHCT..SSEEEE-S---TTTHHHHHHHHHHTTSB--TSSTTTSEEE-HHHHHHHSSHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHH CS
   QRPTase_C   1 iAtltarmveaaksa..kvrildTRkttPglrllekyAvliGGgdnhrlgLsdmvlikdnhiaaagsiveavksvreavdkevkievevesleeleevl 97 
                 iAt++a+mv+ +++a  k  +++TRkttPg+rl+eky +liGG+d hr++Ls+mv++kdnh++  gsi+eav ++r+++++ +kievev+s+ee++e++
  CCE27247.1 135 IATQSAHMVRLVRQAgyKGILAGTRKTTPGFRLVEKYGMLIGGADAHRMDLSSMVMLKDNHVWSRGSITEAVAAARAVAGFSLKIEVEVQSEEEADEAI 233
                 9*************999********************************************************************************** PP

                 HHT-SEEEEES--HHHHHHHHHHHHHHSTT....SEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB----EEEE CS
   QRPTase_C  98 eaeadiimLDnfsveelkkaveelkeknkr....vlievSGgvtlenveeyaksgvdvisvgalthsvkalDislk 169
                 +a+ad++mLDnf+ e ++ a+ +l+e++      +l+evSGg+t env++y + ++d+is+++++++v+ +D+slk
  CCE27247.1 234 AAGADVVMLDNFTGEGVRVAARSLRERWMGksrhFLLEVSGGLTAENVAAYVCNDIDIISTSSIHQGVPHIDFSLK 309
                 ***********************98888766789****************************************97 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   2.8e-18   1.6e-14      13      89 .]      50     133 ..      44     133 .. 0.87
   2 ?   -2.2   0.0      0.73   4.3e+03      26      43 ..     151     168 ..     138     186 .. 0.75

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 2.8e-18
                 CTTSEEEEEEEESSSEEE-SHHHHHHHHHHHTTTEEEESS-TT-EE........ETTEEEEEEEEEHHHHHHHHHHHHHHHHHHH CS
   QRPTase_N  13 peekkakaeiiakeegvvaGlevaeevfellpglevellvkDGerv........ekgdvlleieGnarallsaERvaLnllqrlS 89 
                  +++  +a++ ak++g++aG ++++evf++  g++v+++ ++ +++        + + ++++i+G+ara+l +ERvaLn l r+S
  CCE27247.1  50 VGDHARTATLWAKSSGILAGRPFFDEVFRQT-GCAVTWHLPEASQLdipgtdspSTKIKCATISGPARAILLGERVALNTLARCS 133
                 6788899************************.**********998833333322356689***********************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.73
                 SSEEE-SHHHHHHHHHHH CS
   QRPTase_N  26 eegvvaGlevaeevfell 43 
                  +g++aG+      f+l+
  CCE27247.1 151 YKGILAGTRKTTPGFRLV 168
                 468999988877777776 PP

>> PRAI  N-(5'phosphoribosyl)anthranilate (PRA) isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   8.5e-07    0.0051      96     164 ..     217     286 ..     200     312 .] 0.63

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 8.5e-07
                 TTSEEEEEEE-SSS--S-SSTT-..SEEEEESSS-SSSXXXXGGGGTTSXX...TTEEE..ESSXXTTTHHHHHT CS
        PRAI  96 vikalkvaesvdevkearradhv..dllllDsgaGGtGelldwsliskllks..lkviL..AGGLtpeNvaeaik 164
                 +  +++v++    ++ea +a ++  d+++lD+ +G +G+++   ++ +      ++++L   GGLt+eNva  + 
  CCE27247.1 217 LKIEVEVQS----EEEADEAIAAgaDVVMLDNFTG-EGVRVAARSLRERWMGksRHFLLevSGGLTAENVAAYVC 286
                 333333333....34444443333499*****776.*********99866545555554559********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2524.50
//
Query:       CCE27248.1  [L=876]
Description: uncharacterized protein CPUR_00720 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.036   13.9   0.0       0.08   12.8   0.0    1.5  1  DUF4909   Domain of unknown function (DUF4909)


Domain annotation for each model (and alignments):
>> DUF4909  Domain of unknown function (DUF4909)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.4e-06      0.08      50     102 ..     189     242 ..     180     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.4e-06
     DUF4909  50 ipdnvlnckpdfwktlkykkdkvtyyvylienlddevfhlsal.qdmnripidi 102
                  p   +   pdf +  k ++d v y   +++ l+d  f l+al +dmn +   i
  CCE27248.1 189 EPSSKFLNAPDFERPEKTQNDDVRYESEVMNSLEDAFFALTALiNDMNEVKAHI 242
                 555555567********************************97579**998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 6178.03
//
Query:       CCE27249.1  [L=892]
Description: uncharacterized protein CPUR_00721 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.018   14.9   0.0       0.04   13.8   0.0    1.5  1  DUF4909   Domain of unknown function (DUF4909)


Domain annotation for each model (and alignments):
>> DUF4909  Domain of unknown function (DUF4909)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.2e-06      0.04      50     102 ..     187     240 ..     178     252 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.2e-06
     DUF4909  50 ipdnvlnckpdfwktlkykkdkvtyyvylienlddevfhlsal.qdmnripidi 102
                  p   +   pdf +  k ++d v y   +++ l+d  f l+al +dmn++   i
  CCE27249.1 187 EPSSKFLNAPDFERPKKTQNDDVRYESEVMNSLEDAFFALTALvNDMNQVKAHI 240
                 555555567********************************98579**998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (892 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 6481.80
//
Query:       CCE27250.1  [L=273]
Description: related to dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-64  217.1   6.9      1e-62  211.8   6.9    2.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    4.7e-48  163.2   4.9    3.7e-46  157.0   4.9    2.0  1  adh_short        short chain dehydrogenase
    1.4e-09   38.1   1.8    2.8e-09   37.1   1.8    1.5  1  KR               KR domain
    4.4e-05   23.1   0.6     0.0001   21.9   0.6    1.7  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0002   20.6   0.1    0.00045   19.4   0.1    1.5  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.002   18.2   0.0     0.0085   16.2   0.2    1.9  2  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do
     0.0067   16.3   0.3      0.011   15.7   0.3    1.3  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.8   6.9     4e-66     1e-62       1     234 []      11     271 ..      11     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: 211.8 bits;  conditional E-value: 4e-66
                   TTTTSHHHHHHHHHHHTT-E.EEEEESSGGH....HHHHHHHHHHTT.......SE.E.........EE--TTSHHHHHHHHHHHHHHHSSEEEEEE CS
  adh_short_C2   1 GaasgIGraiAkalaeeGae.vvltdlneea....kkrveelaeelg.......ae.v.........lecDVtdeeqvealveevvekfgklDilvn 75 
                   GaasgIG+a+A a+ +eGa  v+l+d+ne a    ++++e+l ++++       ++ +         + +DVtde qv++++ee++++fg+lD++vn
    CCE27250.1  11 GAASGIGKACATAFIKEGAAgVALVDINETAlqtaRAEIENLIANMEpraeasgSKgMprrqplvatYVLDVTDEIQVQRVIEEAAANFGRLDYVVN 107
                   9*****************988********996222233444444443332222222224555556899***************************** PP

                   -----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.....CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEE CS
  adh_short_C2  76 nagiapklkgpfletsreefdraldvnlyslfllakaalplmkeg.....gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvN 167
                   +ag+a      +++++ e+++r+ld+nl +++++++ a+++m e+     gsivn++s+ + r+++n +ay+++K+a+++ltr++A ++++++iR+N
    CCE27250.1 108 AAGVASVGLCGVASIPTEDWKRVLDINLDGTLHVLRSAARVMLEQsgpkrGSIVNIASILGVRSMSNSAAYTTSKHAVVGLTRSAAIDYAKERIRIN 204
                   *******88899****************************7776668999*********************************************** PP

                   EEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 168 avspgpikTlaasgikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   a++pg+++T++ ++ ++ +e  + ++a++p+grlg+pee+a+ +lfLa  ++sy+tG+tl+ DgG+t
    CCE27250.1 205 AICPGYTDTPLLKKNAHLHERVAGAAAEIPMGRLGQPEEIADGVLFLAGGRSSYVTGTTLMLDGGYT 271
                   ******************************************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.0   4.9   1.5e-49   3.7e-46       3     190 ..       7     219 ..       5     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 157.0 bits;  conditional E-value: 1.5e-49
                 EEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT.....TSE...............EEEEE-TTTSHHHHHHHHHHHHHHHSSESE CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee.....gak...............alaiqvDvtdreevealvekavkklgkldv 80 
                 +lvtGa+sGIG+a+a +++keGa  v+ vd++e +l+++ +e++++       +               + ++ +Dvtd+ +v++++e+a++++g+ld 
  CCE27250.1   7 ALVTGAASGIGKACATAFIKEGAAGVAlVDINETALQTARAEIENLianmeP-RaeasgskgmprrqplVATYVLDVTDEIQVQRVIEEAAANFGRLDY 104
                 89********************998877***************998765530.133445556677777788999************************* PP

                 EEE---S..S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH...HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEE CS
   adh_short  81 LvnNAGi..tgsgpfselseeewervievNltgvflltravlpaml...kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirv 174
                 +vn AG+   g + ++++  e+w+rv+++Nl g++++ r++++ ml     ++G+Ivn++S+ g  ++ + aaY++sK+av+gltrs+a ++a+++ir+
  CCE27250.1 105 VVNAAGVasVGLCGVASIPTEDWKRVLDINLDGTLHVLRSAARVMLeqsGPKRGSIVNIASILGVRSMSNSAAYTTSKHAVVGLTRSAAIDYAKERIRI 203
                 *******88788999*******************************6655679********************************************** PP

                 EEEEESSBSSHHHHHH CS
   adh_short 175 navaPGlvdTdmakel 190
                 na++PG++dT++ k+ 
  CCE27250.1 204 NAICPGYTDTPLLKKN 219
                 ***********99876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   1.8   1.1e-12   2.8e-09       1     150 [.       5     179 ..       5     193 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.1e-12
                 SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS......--HHHHHHHHHHHHTT-............EEEE----TT-HHHHHHHHHHHHHHSS--- CS
          KR   1 gtylitGGlGgLGlelarwlaekgarhlvllsRsa....aadedskaliaelealga............evevvaaDvsdkdavealleeikaeeppik 83 
                 g  l+tG++ g+G++ a+  +++ga+ ++l+  ++    +a+++ ++lia++e +               v ++ +Dv+d+ +v++++ee+ a+++++ 
  CCE27250.1   5 GFALVTGAASGIGKACATAFIKEGAAGVALVDINEtalqTARAEIENLIANMEPRAEasgskgmprrqpLVATYVLDVTDEIQVQRVIEEAAANFGRLD 103
                 5679***************************999855552233333333333333113455666666669***************************** PP

                 EEEE---------..TTT--HHHHHHHHTTTTHHHHHHHHHTTT.......S--SEEEEEEEHHHHH--TT-HHHH CS
          KR  84 GvihaAgvlrdkl..leemtaedleqvlapKvkGawnLhelled.......esldffvlfSSiagllgsagqanYa 150
                  v++aAgv+  +l  +++  +ed+++vl   ++G+ ++ +  ++        +   +v ++Si g+  +   a+Y+
  CCE27250.1 104 YVVNAAGVASVGLcgVASIPTEDWKRVLDINLDGTLHVLRSAARvmleqsgPKRGSIVNIASILGVRSMSNSAAYT 179
                 *********99874468999**************998776655523333333334566666666666666666665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.6     4e-08    0.0001       1     104 [.       7     147 ..       7     208 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4e-08
                 EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC.........................EEEE--TT-HHHHHHHHHH....H.T-SEE CS
   Epimerase   1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl.........................elveldltdrsalerlfke....e.qpdav 68 
                 +lVtGa+  iG+a + a+ ++g   v  +d +++a +tar e                             + ld+td+ +++r+++e    + + d+v
  CCE27250.1   7 ALVTGAASGIGKACATAFIKEGAAgVALVDINETALQTARAEIEnlianmepraeasgskgmprrqplvATYVLDVTDEIQVQRVIEEaaanFgRLDYV 105
                 59********************777999999999988888776689***********************9**********9999998733222467*** PP

                 EE--S---HHHH......HHSHHHHHHHHTHHHHHHHHHHHH CS
   Epimerase  69 ihlAavggvaas......sedpadfieknlqgtlnlleaark 104
                 +++A+v++v+         ed ++++++nl gtl++l  a +
  CCE27250.1 106 VNAAGVASVGLCgvasipTEDWKRVLDINLDGTLHVLRSAAR 147
                 ***998887754221122345566788999999999988875 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   1.8e-07   0.00045       2     118 ..       8     148 ..       7     153 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.8e-07
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH...................-TTEEEE....E--TT-HHHHHHHTT.......T CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeieke.............leeelkkkklkveivpvigdvrdkerlekaleel.....k 77 
                      lvtGa+  iG++  + ++k+ ++ + l++ +E++l++ + e              + ++   + +  +++ + dv+d+ ++++++ee      +
       CCE27250.1   8 LVTGAASGIGKACATAFIKEGAAGVALVDINETALQTARAEienlianmepraeASGSKGMPRRQPLVATYVLDVTDEIQVQRVIEEAaanfgR 101
                      8**********************************99999866655553332111111111122334567899********9999986333335 PP

                      -SEEEE------HHHHH......HSHHHHHHHHHHHHHHHHHHHHHT CS
  Polysacc_synt_2  78 vdvvfhaAAlKhVPlve......enpleaiktNvlgtenvieaaiea 118
                       d+v++aA +  V l+       e +  +++ N  gt +v++ a + 
       CCE27250.1 102 LDYVVNAAGVASVGLCGvasiptEDWKRVLDINLDGTLHVLRSAARV 148
                      799******99999986221111345567788999999999888765 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   3.3e-06    0.0085       5      54 ..       9      57 ..       7      68 .. 0.87
   2 ?   -2.0   0.0       1.3   3.4e+03      83     106 ..     208     231 ..     207     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.3e-06
                EETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCST CS
     Ldh_1_N  5 vvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistfls 54
                v+Gaa giG+++a++  +++ a  +aL+Di++ +l+   +++++  ++++
  CCE27250.1  9 VTGAASGIGKACATAFIKEGAAG-VALVDINETALQTARAEIENLIANME 57
                99****************99999.*************9999998877665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
                 TTTTHHHHHHHHHHHHHHHHHHHH CS
     Ldh_1_N  83 pGetRddLlkvNakIvkeiveaia 106
                 pG t   Llk+Na++ + ++ a a
  CCE27250.1 208 PGYTDTPLLKKNAHLHERVAGAAA 231
                 788888999999999988877766 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.3   4.2e-06     0.011      10      86 ..      16      95 ..       8     101 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.2e-06
                CHHHHHHHHHHTT-E.EEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCE..EEES-HHHHHC-SEEEE-S CS
     3HCDH_N 10 mGagiaavfasagle.Vvlvdiseealekalekieksleklvekgklkeeeveaalari..sfttdleeavdadlviEav 86
                +G+  a++f+++g   V lvdi+e al++a+++ie+ +++++ + +++ ++   + + +  ++  d+ + ++++ viE +
  CCE27250.1 16 IGKACATAFIKEGAAgVALVDINETALQTARAEIENLIANMEPRAEASGSKGMPRRQPLvaTYVLDVTDEIQVQRVIEEA 95
                899*********8644********************99999888888755444443333114666777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2125.48
//
Query:       CCE27251.1  [L=511]
Description: related to alpha-N-arabinofuranosidase / alpha-L-arabinofuranosidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-47  162.1   3.6    3.6e-47  161.1   2.9    1.8  2  Glyco_hydro_43  Glycosyl hydrolases family 43
    1.3e-06   28.7   0.0    2.1e-06   28.0   0.0    1.3  1  DUF1080         Domain of Unknown Function (DUF1080)
     0.0063   16.8   1.0        3.7    7.8   0.1    2.4  2  CBM_4_9         Carbohydrate binding domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.1   2.9     6e-51   3.6e-47       2     286 ..      34     316 ..      33     319 .. 0.92
   2 ?   -1.1   0.0      0.16   9.6e+02      90     111 ..     420     441 ..     410     449 .. 0.77

  Alignments for each domain:
  == domain 1  score: 161.1 bits;  conditional E-value: 6e-51
                     ESESBCSSEESEEEEEETTCEEEEEEEBTEE...SEEEEEEESSSSSCEEEEECEESTTTCSTTTEECTEEEEEEEETTEEEEEEE..EEETTCC CS
  Glyco_hydro_43   2 rnPvlsgfypDpsilrvgedyYlvtstfewf...pglrifhSkdLvnWkqvgrvlerrsqlsmkgknasWAPeiskhdgkyylyyt..atkkgea 91 
                      nP++ gfy+Dp+   ++++y ++ +++ ++   + l  f+S dL +W+++++vl +++  +++++  +WAP+   ++gkyyly+     + + +
      CCE27251.1  34 GNPFVDGFYADPDSEFYNNEYWVYPTSSYAYdqqTYLDAFSSPDLIHWTKHRNVLLATDFPWVRRA--IWAPAPIARNGKYYLYFGanDIQSDAE 126
                     6******************99999999988899899*******************99988886655..5*****************544444555 PP

                     CSEEEEEEESSTTS--EECEESSCS.....TSSECEEEEEEETT.SEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBB CS
  Glyco_hydro_43  92 kqgifvvtadspeGpwsdpiklkts.....gssgiDpslfeddd.GkkYlvwgqwdkreghseiylaeldddtlklkgektklikagtelkglkv 180
                       gi+v +a +p Gp++d++ +++      g + iD ++f ddd G++Y+++g+      h++ ++a+l++d+++l + +   i+++   ++ k+
      CCE27251.1 127 IGGIGVGVAGNPSGPYKDALGKPLIgtyihGAQPIDQDVFLDDDtGQAYIYYGG------HGHANVAKLNEDMTSLGSFDDGSIFKEI--TPDKY 213
                     556*****************99888899*9************************......45569*************9999999999..999** PP

                     EEEEEEEEETTEEEEEEEESTSSTT.EEEEEEEESSTTSGGEEECTCCSEE.TBTTSTSEEEEEEEEEE-TTSS.EEEEEEEESCCTTCCGTTSS CS
  Glyco_hydro_43 181 tEGPhlykrdgyyYLlaaeggtgse.yavvvarsksllgPyewkkknpiltsrspeepiqgpGHaslvetpdge.wyivyhagrpegrglytlgR 273
                     +EG +++kr+g+yYL+++egg g++ yav +a s+s++gP++     +il++  + +  +g+GH++++++p ++  +ivyh+    g++ ++  R
      CCE27251.1 214 VEGIQMLKRNGTYYLFWSEGGWGGPdYAVAYAMSASPTGPFRRI--ARILEQ--DPAVATGAGHNGVIHVPGTDvYFIVYHRHPL-GDKIDQNDR 303
                     ****************************************8776..788886..79999***************99******999.********* PP

                     EEEEEEEEEETTS CS
  Glyco_hydro_43 274 etllqrvewkaDG 286
                     +++ +r+ ++ D+
      CCE27251.1 304 HLAYDRLHFNHDD 316
                     *********9874 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.16
                     CCCSEEEEEEESSTTS--EECE CS
  Glyco_hydro_43  90 eakqgifvvtadspeGpwsdpi 111
                     +  q+ f++ a    G+w++  
      CCE27251.1 420 TVRQRLFLIRASASGGTWTEIA 441
                     5788999999999999999865 PP

>> DUF1080  Domain of Unknown Function (DUF1080)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.5e-10   2.1e-06       6     184 ..     330     507 ..     326     508 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3.5e-10
                 T.SSTTTTEEETTSSS..TTEEEETTEEE.CGG.ESSS--EEESSEBSSEEEEEEEEE..........ETTT..EEEEEEEESCTTTSSGGGTSCEEEE CS
     DUF1080   6 fnGkdldgWkgkegkatseatkvedGvlvaaessgkgggflitkkefgdfeLklefki..........segg..nSGillrsqkeekgkdavagyevqi 92 
                 f++ ++ gW++++g ++ +       +l      +++gg+ + + +fgd  ++ ++ i          s  +   +G+l+r++++ +g dav gy + i
  CCE27251.1 330 FEDGNMLGWTTYGGAWDAT-----TKALR---AAASRGGNALLNTNFGDLAFTTDVTIpvssnsssssS--SngSAGLLFRATRPVTGADAVDGYYAGI 418
                 5555788999998777642.....45666...88999999999999************88766655433..056************************* PP

                 E-TTTH..STCCCSTTSBTTTBTTB--SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTSHHHHHHSSBEEEEECCCSTEEEEEEEE CS
     DUF1080  93 ldseke..kganrstGslydeeskqvkpkakaakppgeWntyeiivkgdrvtvwlNGvlvldftdldaetekgkkgpIaLqdhgaeveFRniki 184
                     ++        +G+ + e      ++++a+ +pg+  ++ +++kg +++v+  + + ++ +  d++++++ +g  ++ +   e+ F n+++
  CCE27251.1 419 STVRQRlfLIRASASGGTWTE-----IASTQADLRPGQTYRVCVRAKGTSISVYAGDSTAAQLHVVDGTYGTAWTGMNGVRVFETEAVFDNVRV 507
                 **9999995666666666633.....369*************************9999999999999888777777777777777777777776 PP

>> CBM_4_9  Carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1   0.00086       5.1       7      23 ..     328     344 ..     324     386 .. 0.72
   2 !    7.8   0.1   0.00061       3.7      38      90 ..     427     473 ..     410     500 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00086
                 CTSTTSTTTTSEECSST CS
     CBM_4_9   7 gtFedgglegWkargks 23 
                  +Fedg++ gW+++g++
  CCE27251.1 328 DNFEDGNMLGWTTYGGA 344
                 69*************97 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00061
                 EEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTSEEEEEEEEEESST CS
     CBM_4_9  38 slkvsgrgetwdgqaiditirlekgktYtvsfwvkassgksrtikvkigdtda 90 
                  +++s  g tw+ +a ++   l +g+tY+v + +k+     ++i+v +gd  a
  CCE27251.1 427 LIRASASGGTWTEIASTQ-ADLRPGQTYRVCVRAKG-----TSISVYAGDSTA 473
                 578888899999998888.99**************9.....566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3777.34
//
Query:       CCE27252.1  [L=182]
Description: related to dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-27   93.9   1.0    9.3e-25   87.2   1.0    2.0  1  adh_short        short chain dehydrogenase
    4.1e-24   85.4   2.0    2.6e-22   79.5   2.0    2.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    4.3e-08   33.3   0.4    7.8e-08   32.4   0.4    1.4  1  KR               KR domain
     0.0004   19.9   0.0    0.00049   19.6   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0019   18.3   0.5     0.0038   17.3   0.1    1.6  2  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do
     0.0024   17.1   0.2      0.004   16.3   0.2    1.4  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0048   16.8   0.4     0.0065   16.4   0.4    1.1  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
  ------ inclusion threshold ------
       0.12   13.1   0.1       0.19   12.4   0.1    1.5  1  Methyltransf_25  Methyltransferase domain
       0.16   11.8   0.2       0.26   11.1   0.2    1.3  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   1.0   4.7e-28   9.3e-25       3     138 ..       7     166 ..       5     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 4.7e-28
                 EEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT.....TSE...............EEEEE-TTTSHHHHHHHHHHHHHHHSSESE CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee.....gak...............alaiqvDvtdreevealvekavkklgkldv 80 
                 +lvtGa+sGIG+a+ak+++keGa  v+ vd++e +l+++ +e++++       +               + ++ +Dvtd+ +v++++e+a++++g+ld 
  CCE27252.1   7 ALVTGAASGIGKACAKAFIKEGAAGVAlVDINETALQTARAEIEDLianmeP-RaeasgskgmprrqplVATYVLDVTDEIQVQRVIEEAAANFGRLDY 104
                 89********************998877**************9987754430.133445556667777788999************************* PP

                 EEE---S.S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH...HCTTEEEEEEEEGG CS
   adh_short  81 LvnNAGi.tgsgpfselseeewervievNltgvflltravlpaml...kqssGrIvnvsSva 138
                 +vn AG+    + ++++  e+w+r ++vNl g+f++ r+++  ml     ++G+Ivn +  a
  CCE27252.1 105 VVNSAGVpGMLCGVASTPTEDWKRELDVNLGGTFHVLRSATGIMLkqsGPKRGSIVNFTCAA 166
                 *******888999********************************5555578*****88766 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   2.0   1.3e-25   2.6e-22       1     129 [.      11     165 ..      11     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 1.3e-25
                   TTTTSHHHHHHHHHHHTT-E.EEEEESSGGH....HHHHHHHHHHTT.......SE.E.........EE--TTSHHHHHHHHHHHHHHHSSEEEEEE CS
  adh_short_C2   1 GaasgIGraiAkalaeeGae.vvltdlneea....kkrveelaeelg.......ae.v.........lecDVtdeeqvealveevvekfgklDilvn 75 
                   GaasgIG+a+Aka+ +eGa  v+l+d+ne a    ++++e+l ++++       ++ +         + +DVtde qv++++ee++++fg+lD++vn
    CCE27252.1  11 GAASGIGKACAKAFIKEGAAgVALVDINETAlqtaRAEIEDLIANMEpraeasgSKgMprrqplvatYVLDVTDEIQVQRVIEEAAANFGRLDYVVN 107
                   9*****************988********996222233444444333332222222225555556899***************************** PP

                   -----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.....CEEEEEEEG CS
  adh_short_C2  76 nagiapklkgpfletsreefdraldvnlyslfllakaalplmkeg.....gsivnlssv 129
                   +ag+       +++t+ e+++r ldvnl ++f++++ a  +m ++     gsivn +  
    CCE27252.1 108 SAGVPGM-LCGVASTPTEDWKRELDVNLGGTFHVLRSATGIMLKQsgpkrGSIVNFTCA 165
                   ******9.8999****************************7766558999*****9865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.4   3.9e-11   7.8e-08       1     116 [.       5     137 ..       5     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 3.9e-11
                 SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS......--HHHHHHHHHHHHT.T-...........EEEE----TT-HHHHHHHHHHHHHHSS--- CS
          KR   1 gtylitGGlGgLGlelarwlaekgarhlvllsRsa....aadedskaliaeleal.ga...........evevvaaDvsdkdavealleeikaeeppik 83 
                 g  l+tG++ g+G++ a+  +++ga+ ++l+  ++    +a+++ ++lia++e + +a            v ++ +Dv+d+ +v++++ee+ a+++++ 
  CCE27252.1   5 GFALVTGAASGIGKACAKAFIKEGAAGVALVDINEtalqTARAEIEDLIANMEPRaEAsgskgmprrqpLVATYVLDVTDEIQVQRVIEEAAANFGRLD 103
                 5679**************************9999855663333333344444433222444555666659***************************** PP

                 EEEE------.---TTT--HHHHHHHHTTTTHHH CS
          KR  84 GvihaAgvlr.dklleemtaedleqvlapKvkGa 116
                  v+++Agv      ++++ +ed+++ l   + G+
  CCE27252.1 104 YVVNSAGVPGmLCGVASTPTEDWKRELDVNLGGT 137
                 *******976234466666677777666655555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.4e-07   0.00049       1      77 [.       7     114 ..       7     161 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.4e-07
                 EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC.........................EEEE--TT-HHHHHHHHHH....H.T-SEE CS
   Epimerase   1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl.........................elveldltdrsalerlfke....e.qpdav 68 
                 +lVtGa+  iG+a +ka+ ++g   v  +d +++a +tar e                             + ld+td+ +++r+++e    + + d+v
  CCE27252.1   7 ALVTGAASGIGKACAKAFIKEGAAgVALVDINETALQTARAEIEdlianmepraeasgskgmprrqplvATYVLDVTDEIQVQRVIEEaaanFgRLDYV 105
                 59********************777999999988888887665588***********************9**********999999872222245799* PP

                 EE--S---H CS
   Epimerase  69 ihlAavggv 77 
                 ++ A+v g 
  CCE27252.1 106 VNSAGVPGM 114
                 **9996543 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.9e-06    0.0038       5      56 ..       9      59 ..       7      69 .. 0.87
   2 ?   -2.4   0.0       2.3   4.6e+03      61      80 ..      93     112 ..      81     113 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.9e-06
                EETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS- CS
     Ldh_1_N  5 vvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvk 56
                v+Gaa giG+++a +  +++ a  +aL+Di++ +l+   +++++  ++++ +
  CCE27252.1  9 VTGAASGIGKACAKAFIKEGAAG-VALVDINETALQTARAEIEDLIANMEPR 59
                99***************999998.******************9988877555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.3
                 ESSGGGGTTESEEEE--S-S CS
     Ldh_1_N  61 ekeeealkdadvvvitagvp 80 
                 e+  + +   d+vv  agvp
  CCE27252.1  93 EEAAANFGRLDYVVNSAGVP 112
                 45555666789999999987 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2     2e-06     0.004       2      51 ..       8      57 ..       7     111 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2e-06
                     EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TT CS
  Polysacc_synt_2  2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkk 51
                     lvtGa+  iG++  + ++k+ ++ + l++ +E++l++ + e+e+ +++ +
       CCE27252.1  8 LVTGAASGIGKACAKAFIKEGAAGVALVDINETALQTARAEIEDLIANME 57
                     8***********************************99999655444433 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4   3.3e-06    0.0065      10      86 ..      16      95 ..       8     100 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.3e-06
                CHHHHHHHHHHTT-E.EEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCE..EEES-HHHHHC-SEEEE-S CS
     3HCDH_N 10 mGagiaavfasagle.Vvlvdiseealekalekieksleklvekgklkeeeveaalari..sfttdleeavdadlviEav 86
                +G+  a++f+++g   V lvdi+e al++a+++ie+ +++++ + +++ ++   + + +  ++  d+ + ++++ viE +
  CCE27252.1 16 IGKACAKAFIKEGAAgVALVDINETALQTARAEIEDLIANMEPRAEASGSKGMPRRQPLvaTYVLDVTDEIQVQRVIEEA 95
                899*********8644********************99999888888755444444333114667777777777777765 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   9.8e-05      0.19       6      50 ..      14      58 ..       9     102 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.8e-05
                     -TTSH.HHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEE CS
  Methyltransf_25  6 cGtGr.ltlalakrlgkakvtgvDiseemleaareraeeeglnvef 50
                      G G+  ++a+ k+ g+a v  vDi+e++l++ar+++e+  +n+e 
       CCE27252.1 14 SGIGKaCAKAFIKE-GAAGVALVDINETALQTARAEIEDLIANMEP 58
                     55555134456666.69*******************9875446554 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00013      0.26      11      51 ..      13      52 ..       9      62 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
  Methyltransf_31 11 GCGtGeltfelaeelgpkaevvGiDiseeaielArenaqkl 51
                     ++G G+ + +++ + g  a v ++Di+e+a++ Ar++ ++l
       CCE27252.1 13 ASGIGKACAKAFIKEG-AAGVALVDINETALQTARAEIEDL 52
                     6788888888885444.477***************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1414.67
//
Query:       CCE27253.1  [L=266]
Description: related to dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-69  232.2   1.4    8.4e-69  231.7   1.4    1.2  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    7.4e-50  169.1   1.2    1.3e-49  168.3   1.2    1.4  1  adh_short        short chain dehydrogenase
    2.1e-10   40.8   0.8    3.2e-10   40.2   0.8    1.3  1  KR               KR domain
    0.00011   21.4   0.1    0.00014   21.1   0.1    1.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    0.00025   20.6   0.9    0.00084   18.9   0.9    1.9  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.03   14.4   0.5      0.063   13.4   0.3    1.7  1  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do
      0.034   14.0   0.2      0.051   13.5   0.2    1.2  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.7   1.4   3.3e-72   8.4e-69       1     234 []      11     264 ..      11     264 .. 0.92

  Alignments for each domain:
  == domain 1  score: 231.7 bits;  conditional E-value: 3.3e-72
                   TTTTSHHHHHHHHHHHTT-E.EEEEESSGGH.HHHHHHHHHHTT...SEE..........EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG CS
  adh_short_C2   1 GaasgIGraiAkalaeeGae.vvltdlneea.kkrveelaeelg...aev..........lecDVtdeeqvealveevvekfgklDilvnnagiapk 82 
                   GaasgIG+a+Aka+ +eGa  v+l+d+ne+a + + +++++e+    ++v          + +DVt+e+qv+++v+e+++ fg+lD++vn+ag++ +
    CCE27253.1  11 GAASGIGKACAKAFIKEGAAgVALVDINEKAlQITRAQIEAEIAnmsSSVdtseqpwlitYVLDVTNEKQVQHVVDEAAAYFGRLDYVVNAAGVTCA 107
                   9*****************988*********976555555555443332233345556789***********************************99 PP

                   CSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.....CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--B CS
  adh_short_C2  83 lkgpfletsreefdraldvnlyslfllakaalplmkeg.....gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpi 174
                       +++t+ e+++r+ld+nl ++f+++ aa+++m ++     gsivn++s+ + r++pn++ay a+K+a+++ltr++A +++ +g R+Nav+pg++
    CCE27253.1 108 NPCGVASTPTEDWKRVLDINLDGTFHVLCAAARVMLKQsgpkrGSIVNVASILGVRGLPNTAAYVASKHAVVGLTRSAALDYAGEGLRINAVCPGYT 204
                   88999****************************6665558999****************************************************** PP

                   HCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 175 kTlaasgikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   +T++ ++ ++f+e  e++ +  p+grlg+pee+a+ +lfLa  ++sy+tG+tl+vDgG+t
    CCE27253.1 205 DTPLLRANPNFRERVEAAVDVMPMGRLGQPEEIADGVLFLAGGRSSYVTGTTLMVDGGYT 264
                   ***********************************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.3   1.2   5.2e-53   1.3e-49       3     189 ..       7     211 ..       5     217 .. 0.91

  Alignments for each domain:
  == domain 1  score: 168.3 bits;  conditional E-value: 5.2e-53
                 EEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT....TSE........EEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S. CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee....gak........alaiqvDvtdreevealvekavkklgkldvLvnNAGi. 87 
                 +lvtGa+sGIG+a+ak+++keGa  v+ vd++e++l+ + +++++e    +++        ++++ +Dvt++++v+ +v++a++ +g+ld +vn AG+ 
  CCE27253.1   7 ALVTGAASGIGKACAKAFIKEGAAGVAlVDINEKALQITRAQIEAEianmSSSvdtseqpwLITYVLDVTNEKQVQHVVDEAAAYFGRLDYVVNAAGVt 105
                 89********************998877********999999998886552224455567789999********************************7 PP

                 .S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH...HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB CS
   adh_short  88 .tgsgpfselseeewervievNltgvflltravlpaml...kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlv 182
                  ++++ ++++  e+w+rv+++Nl g+f++  a+++ ml     ++G+Ivnv+S+ g  +++++aaY AsK+av+gltrs+a ++a +g r+nav+PG++
  CCE27253.1 106 cANPCGVASTPTEDWKRVLDINLDGTFHVLCAAARVMLkqsGPKRGSIVNVASILGVRGLPNTAAYVASKHAVVGLTRSAALDYAGEGLRINAVCPGYT 204
                 777888999999**************************5555578****************************************************** PP

                 SSHHHHH CS
   adh_short 183 dTdmake 189
                 dT++ ++
  CCE27253.1 205 DTPLLRA 211
                 **99875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.8   1.2e-13   3.2e-10       1     155 [.       5     177 ..       5     188 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.2e-13
                 SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS......--HHHHHHHHHHHHT.T-....EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--- CS
          KR   1 gtylitGGlGgLGlelarwlaekgarhlvllsRsa....aadedskaliaeleal.ga....evevvaaDvsdkdavealleeikaeeppikGvihaAg 90 
                 g  l+tG++ g+G++ a+  +++ga+ ++l+  ++     ++++ +a+ia+++++ ++       ++ +Dv+++++v+++++e+ a ++++  v++aAg
  CCE27253.1   5 GFALVTGAASGIGKACAKAFIKEGAAGVALVDINEkalqITRAQIEAEIANMSSSvDTseqpWLITYVLDVTNEKQVQHVVDEAAAYFGRLDYVVNAAG 103
                 5679***************************99974454344444555555555432244444556779****************************** PP

                 ------..TTT--HHHHHHHHTTTTHHHHHHHHHTTT.......S--SEEEEEEEHHHHH--TT-HHHHHHHHH CS
          KR  91 vlrdkl..leemtaedleqvlapKvkGawnLhelled.......esldffvlfSSiagllgsagqanYaaaNaf 155
                 v+  ++  ++++ +ed+++vl   ++G+ ++  + ++        +   +v ++Si g+ g +  a+Y a  + 
  CCE27253.1 104 VTCANPcgVASTPTEDWKRVLDINLDGTFHVLCAAARvmlkqsgPKRGSIVNVASILGVRGLPNTAAYVASKHA 177
                 *9988744688999**************99876666645544555567899999*****999999999997665 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   5.3e-08   0.00014       2      86 ..       8     103 ..       7     145 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 5.3e-08
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE..........E--TT-HHHHHHHTT.......T-SEEEE- CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkve......ivpvigdvrdkerlekaleel.....kvdvvfha 84 
                      lvtGa+  iG++  + ++k+ ++ + l++ +E++l+  + ++e+e+++ + +v+      +++ + dv+++++++++++e      + d+v++a
       CCE27253.1   8 LVTGAASGIGKACAKAFIKEGAAGVALVDINEKALQITRAQIEAEIANMSSSVDtseqpwLITYVLDVTNEKQVQHVVDEAaayfgRLDYVVNA 101
                      8********************************998777775555444333332111112567899**********999762223346777777 PP

                      -- CS
  Polysacc_synt_2  85 AA 86 
                      A 
       CCE27253.1 102 AG 103
                      75 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.9   3.3e-07   0.00084       1     105 [.       7     141 ..       7     219 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.3e-07
                 EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC...................EEEE--TT-HHHHHHHHHH....H.T-SEEEE--S. CS
   Epimerase   1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl...................elveldltdrsalerlfke....e.qpdavihlAa. 73 
                 +lVtGa+  iG+a +ka+ ++g   v  +d +++a +  r + +                     + ld+t++++++ +++e    + + d+v+++A+ 
  CCE27253.1   7 ALVTGAASGIGKACAKAFIKEGAAgVALVDINEKALQITRAQ-IeaeianmsssvdtseqpwlITYVLDVTNEKQVQHVVDEaaayFgRLDYVVNAAGv 104
                 59********************76577777665544444333.24779***************999********9999999833322457******994 PP

                 -....--HHHHH.HSHHHHHHHHTHHHHHHHHHHHHH CS
   Epimerase  74 v....ggvaass.edpadfieknlqgtlnlleaarka 105
                      +gva +  ed ++++++nl gt ++l aa + 
  CCE27253.1 105 TcanpCGVASTPtEDWKRVLDINLDGTFHVLCAAARV 141
                 4221123333331344567788999999988888754 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   2.5e-05     0.063       5      60 ..       9      63 ..       7      76 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
                EETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEE CS
     Ldh_1_N  5 vvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvkvkvs 60
                v+Gaa giG+++a +  +++ a  +aL+Di++++l+   + ++   +++s++v +s
  CCE27253.1  9 VTGAASGIGKACAKAFIKEGAAG-VALVDINEKALQITRAQIEAEIANMSSSVDTS 63
                99***************999998.*********99888777776666666665555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2     2e-05     0.051      10      57 ..      16      64 ..       8      93 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-05
                CHHHHHHHHHHTT-E.EEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-H CS
     3HCDH_N 10 mGagiaavfasagle.Vvlvdiseealekalekieksleklvekgklke 57
                +G+  a++f+++g   V lvdi+e+al+  +++ie++++++ ++  ++e
  CCE27253.1 16 IGKACAKAFIKEGAAgVALVDINEKALQITRAQIEAEIANMSSSVDTSE 64
                899*********8644********************9999877666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2126.99
//
Query:       CCE27254.1  [L=511]
Description: uncharacterized protein CPUR_00726 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.037   13.6   0.0      0.097   12.2   0.0    1.7  1  PQQ_2     PQQ-like domain


Domain annotation for each model (and alignments):
>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.4e-06     0.097       6      82 ..     142     235 ..     137     260 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.4e-06
       PQQ_2   6 saldaatGaelWrv.....dlar........plgggvsravlsggtlfva......tgggrlvaldaatGkvlWettlegpvvgap.lvaegrvvvv 82 
                 +++da  +a+lW++                 ++g+g+ r++++g+ l v          +rl  +da+tG v+ e  l+++  ++p   a++r+vvv
  CCE27254.1 142 QVYDAQFDALLWELhgnssQ--LvqghqeplQFGEGF-RPSPDGSLLCVIasrgdqRQHRRLLIVDAETGWVRLEHVLSATDGNKPhVSADNRMVVV 235
                 7899999*******765441..0444444556*****.***77777777676655448899999**************9999999855667777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3824.29
//
Query:       CCE27255.1  [L=395]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-22   78.8   0.0    1.7e-11   44.0   0.0    2.1  2  Pkinase         Protein kinase domain
    1.6e-10   40.8   0.0    4.8e-05   22.8   0.0    2.1  2  Pkinase_Tyr     Protein tyrosine kinase
  ------ inclusion threshold ------
       0.15   10.6   0.0       0.21   10.1   0.0    1.1  1  Glyco_hydro_48  Glycosyl hydrolase family 48


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   7.9e-12   4.7e-08       1     121 [.      73     200 ..      73     201 .. 0.88
   2 !   44.0   0.0   2.8e-15   1.7e-11     137     200 ..     260     321 ..     251     369 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 7.9e-12
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHH... CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk..hpnivrlyevfee....kdelylvleyveggeladlle... 90 
                 y+ l+klG G+f++   a+++++++ vAvK+ k e +++++  kvlr i+   + +  + ++ r+++ f+      ++ +lvle++  + ++d+++   
  CCE27255.1  73 YKILHKLGWGGFATTWAAKDRKDNRYVAVKITKSEVEESREL-KVLRAISAAPQDHpgSAHVNRMLDHFTLvgpnGTHECLVLELLGPN-VQDIVQrrc 169
                 77899***************************9999999886.89999998877666899999999999988888999*******9966.999999665 PP

                 HHSS--HHHHHHHHHHHHHHHHHHHHTTEE- CS
     Pkinase  91 rkgslseeeakkiakqilegleylHskgiiH 121
                 + + ls++ ak +akq l+gl++l  + i H
  CCE27255.1 170 KGSRLSSKLAKVFAKQALQGLDFLAVNDIGH 200
                 5556********************8888877 PP

  == domain 2  score: 44.0 bits;  conditional E-value: 2.8e-15
                 EEE-SGTTSEESSSSCSBCTTTSCGGGS.-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTS CS
     Pkinase 137 lKitDFGlakelessskltsfvgtseYl.APEvlkeneyskkvDvWslGvilyelltgkppfsge 200
                 +Ki+DFG a   ++     s   t+ Yl APE++ + + ++ vD+Ws+G++++el+tg+ppf   
  CCE27255.1 260 VKIIDFGEAFLSDNAP---STLNTPLYLqAPEIVFGDQLDRRVDLWSAGCLIFELVTGQPPFDTI 321
                 8********9988865...8888888866*********************************943 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     9e-07    0.0054       3     127 ..      75     201 ..      73     231 .. 0.81
   2 !   22.8   0.0     8e-09   4.8e-05     141     236 ..     259     350 ..     255     359 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9e-07
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS..-BTTB--EEEEEE....SSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl..khpnivkllgvct....keepllivteyvkgGdLlkfLrk 94 
                  + +klG G f++ + ++ +    k++  VavK+ k+e +e+++ ++l+ ++   +      ++ ++l   t    ++ + ++v+e++   ++++ +++
   CCE27255.1  75 ILHKLGWGGFATTWAAKDR----KDNRYVAVKITKSEVEESRELKVLRAISAAPQDhpGSAHVNRMLDHFTlvgpNGTHECLVLELLGP-NVQDIVQR 167
                  6789999***999998888....8999**************999999998887554347789999999999777777779*****9965.67777777 PP

                  T.CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEES CS
  Pkinase_Tyr  95 k.ekekltlkdllsfalqvAkGmeyLeskklvHr 127
                  + + ++l+ k    fa q  +G+++L+ +++ H 
   CCE27255.1 168 RcKGSRLSSKLAKVFAKQALQGLDFLAVNDIGHG 201
                  62566777777777999999*******9998886 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 8e-09
                  EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS..HHHHHHHHHHTTEES-BBTTSBHHHHH CS
  Pkinase_Tyr 141 vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypgl..kneevleklkegkrlekpekcpeelye 236
                  +vki DfG a         ++ ++ ++p+   apE+++  ++  + D Ws G l++E++t g+ p+ ++  ++  ++e++ e++  e p+ ++++++ 
   CCE27255.1 259 LVKIIDFGEAFLS-----DNAPSTLNTPLYLQAPEIVFGDQLDRRVDLWSAGCLIFELVT-GQPPFDTIlmTPPVIVEQMIERTSDELPTRWQAKWHA 350
                  6889999977655.....33345677899999****************************.****999765777788888888888888888777765 PP

>> Glyco_hydro_48  Glycosyl hydrolase family 48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   3.6e-05      0.21     444     483 ..      67     106 ..      63     122 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.6e-05
                     E-TTSTEEEEEEEEEEE-----SSSS----TTEEEEEEEE CS
  Glyco_hydro_48 444 lkedgtfeiPstleWsGqPdtwngsnetansnlhvevvdy 483
                     + +dg ++i  +l W G   tw +++ ++n  + v+++++
      CCE27255.1  67 VLNDGRYKILHKLGWGGFATTWAAKDRKDNRYVAVKITKS 106
                     5689********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3089.35
//
Query:       CCE27256.1  [L=344]
Description: uncharacterized protein CPUR_00728 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-18   66.6   7.4    8.2e-09   35.4   1.1    2.6  2  HTH_Tnp_Tc5    Tc5 transposase DNA-binding domain
  ------ inclusion threshold ------
      0.012   15.9   0.0        7.9    6.8   0.0    2.5  2  CpcD           CpcD/allophycocyanin linker domain
      0.019   15.7   0.1         15    6.4   0.0    2.7  2  MJ1316         MJ1316 RNA cyclic group end recognition domain
      0.033   15.0   0.2         23    5.9   0.0    3.0  3  NDUFA12        NADH ubiquinone oxidoreductase subunit NDUFA12
        0.1   12.7   0.2         28    4.9   0.0    2.8  2  MerR_1         MerR HTH family regulatory protein
       0.12   12.3   1.7        1.7    8.6   0.2    2.6  3  NAD_binding_9  FAD-NAD(P)-binding
       0.19   12.9   0.6         33    5.8   0.1    2.7  2  SmAKAP         Small membrane A-kinase anchor protein


Domain annotation for each model (and alignments):
>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   1.1   3.2e-12   8.2e-09       3      65 ..      88     150 ..      86     151 .. 0.92
   2 !   34.4   0.7   6.4e-12   1.6e-08       1      65 [.     252     316 ..     252     317 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 3.2e-12
                  HHHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHT.S--XX CS
  HTH_Tnp_Tc5   3 elEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRh.glkrr 65 
                  e+E  +l W ++++ +g  i  +++ + A+e++  a++ + +d++aS +W +rF++R+ ++++r
   CCE27256.1  88 EEEAEVLAWAHRQITQGHHIKSRALVQHANEIFA-AQGDCQRDKQASPRWARRFIQRNaHIFKR 150
                  8999***************************983.478999*****************998876 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 6.4e-12
                  THHHHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHT.S--XX CS
  HTH_Tnp_Tc5   1 spelEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRh.glkrr 65 
                  spe+E  +  W ++++ +g  i  +++ +  +e++  a++ + pd++aSk+W +rF++R+ ++++r
   CCE27256.1 252 SPEEEAEVFTWAHRQITQGHNIQSRALVQHVNEIFA-ARGDCQPDKQASKRWARRFIQRNaHIFKR 316
                  699******************************984.589999*****************998876 PP

>> CpcD  CpcD/allophycocyanin linker domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.004        10      21      41 ..      50      70 ..      36      80 .. 0.78
   2 ?    6.8   0.0    0.0031       7.9      21      41 ..     216     236 ..     202     246 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.004
        CpcD 21 kvrrsnsvflVPYerLsqemq 41
                 +   +++  VPY rL +++q
  CCE27256.1 50 TMTEASKALRVPYHRLRSRIQ 70
                5666777778*******9998 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0031
        CpcD  21 kvrrsnsvflVPYerLsqemq 41 
                  +   +++  VPY rL +++q
  CCE27256.1 216 TMTEASKALRVPYHRLRSRIQ 236
                 5666777778********999 PP

>> MJ1316  MJ1316 RNA cyclic group end recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0064        16      44      64 ..      45      66 ..      26      73 .. 0.71
   2 ?    6.4   0.0    0.0058        15      42      64 ..     209     232 ..     182     236 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0064
      MJ1316 44 iedflleeeege.laIPlHRir 64
                i+ + +  e ++ l +P+HR r
  CCE27256.1 45 IRYYKTMTEASKaLRVPYHRLR 66
                4446666677777*******87 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0058
      MJ1316  42 swiedflleeeege.laIPlHRir 64 
                   i+ + +  e ++ l +P+HR r
  CCE27256.1 209 FGIRYYKTMTEASKaLRVPYHRLR 232
                 444446667777777*******87 PP

>> NDUFA12  NADH ubiquinone oxidoreductase subunit NDUFA12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0096        25       3      30 ..      37      63 ..      35      83 .. 0.73
   2 ?   -1.9   0.0       2.4   6.1e+03      36      56 ..     129     149 ..      96     179 .. 0.65
   3 ?    5.9   0.0    0.0091        23       3      30 ..     203     229 ..     201     272 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0096
     NDUFA12  3 lvGeDefGNkYyenkeelegrrrwveya 30
                + G D fG +Yy++++e   +   v y+
  CCE27256.1 37 VAGADLFGIRYYKTMTEA-SKALRVPYH 63
                689***********9763.333334444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
     NDUFA12  36 asqvppeWhgWlhhitdkppt 56 
                  +q  p W +   + + ++ +
  CCE27256.1 129 DKQASPRWARRFIQRNAHIFK 149
                 445556665544444444444 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0091
     NDUFA12   3 lvGeDefGNkYyenkeelegrrrwveya 30 
                 + G D fG +Yy++++e   +   v y+
  CCE27256.1 203 VAGADLFGIRYYKTMTEA-SKALRVPYH 229
                 689***********9763.333334444 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.011        28       2      18 ..      50      66 ..      49      70 .. 0.94
   2 ?    4.8   0.0     0.012        30       2      18 ..     216     232 ..     215     235 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
                EHHHHHHHHTS-HHHHH CS
      MerR_1  2 sigevakilgvtthtlr 18
                +++e++k+l v++h lr
  CCE27256.1 50 TMTEASKALRVPYHRLR 66
                799*************9 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.012
                 EHHHHHHHHTS-HHHHH CS
      MerR_1   2 sigevakilgvtthtlr 18 
                 +++e++k+l v++h lr
  CCE27256.1 216 TMTEASKALRVPYHRLR 232
                 799*************9 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.05   1.3e+02      60     124 ..       2      69 ..       1     108 [. 0.56
   2 ?    8.6   0.2   0.00068       1.7      56      98 ..     164     206 ..     151     272 .. 0.66
   3 ?   -2.1   0.0       1.3   3.3e+03      64      95 ..     254     278 ..     246     322 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.05
  NAD_binding_9  60 slftddpptfaeWlrerga......leeaeeldpddfvpRalyGrYlrdlfeellarlpegvtvevhraev 124
                    s ++ d++t+++W++          ++  ++l++++++   l+G    ++++e+ ++l+  v  + +r+++
     CCE27256.1   2 SSLQPDDDTLRKWIDPDTGklkfprFD-DHNLEERTVAGADLFGIRYYKTMTEASKALR--VPYHRLRSRI 69 
                    55666789******9988765544433.3677777777777777444444444444442..2333334444 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00068
  NAD_binding_9  56 asemslftddpptfaeWlrerga.leeaeeldpddfvpRalyGr 98 
                    a+ems ++ d++t+++W+++    l + +++++++   R + G+
     CCE27256.1 164 ANEMSSLQSDDDTLRKWIDSDTGkL-KFQRFHDYNLEERTVAGA 206
                    899*****************99752.246666666666666553 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.3
  NAD_binding_9  64 ddpptfaeWlrergaleeaeeldpddfvpRal 95 
                    +++ +  +W++++         ++++  +Ral
     CCE27256.1 254 EEEAEVFTWAHRQIT-------QGHNIQSRAL 278
                    555666677777663.......2222222222 PP

>> SmAKAP  Small membrane A-kinase anchor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.013        33      29      83 ..      60     117 ..      46     120 .. 0.78
   2 ?    4.5   0.1     0.032        82      29      82 ..     226     282 ..     212     286 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.013
      SmAKAP  29 kkeerceprvpspalveeevkeepeqsaevkvvvleyAhrL...sqeilsdAlqqWae 83 
                  + +r++ r++    v+++ +++ + s e ++ vl +Ahr     + i s+Al q a+
  CCE27256.1  60 VPYHRLRSRIQGRHSVQANGGQNRALSLEEEAEVLAWAHRQitqGHHIKSRALVQHAN 117
                 455677788888899************************9522245789999988876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.032
      SmAKAP  29 kkeerceprvpspalveeevkeepeqsaevkvvvleyAhrL...sqeilsdAlqqWa 82 
                  + +r++ r++    v+++ +++++ s e ++ v+ +Ahr     ++i s+Al q +
  CCE27256.1 226 VPYHRLRSRIQGCHSVQANGGQNKALSPEEEAEVFTWAHRQitqGHNIQSRALVQHV 282
                 45677888889999*************************952224578888888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2462.88
//
Query:       CCE27257.1  [L=220]
Description: uncharacterized protein CPUR_00729 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.077   13.3   0.0       0.12   12.6   0.0    1.4  1  AAA_22    AAA domain
       0.15   12.5   0.0       0.42   11.1   0.0    1.7  2  DUF4350   Domain of unknown function (DUF4350)


Domain annotation for each model (and alignments):
>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.4e-05      0.12      38     100 ..       6      66 ..       1      91 [. 0.93

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
      AAA_22  38 erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEa 100
                 ++p+++ + l+++   +d+++ ll a+++++k    + ++  +al+q +r+ + +++li DEa
  CCE27257.1   6 RKPHILAISLAHQFYFDDMFEPLLTAIKSRAKF--TQVKDANSALQQLSRQPSPTAVLITDEA 66 
                 578889999999999******************..9999999********9999********8 PP

>> DUF4350  Domain of unknown function (DUF4350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.6e-05      0.42      21      68 ..      41      92 ..      32      93 .. 0.67
   2 ?   -2.6   0.0      0.89     8e+03      26      42 ..     105     128 ..     102     131 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.6e-05
     DUF4350 21 vrrvrkpfdaleg..edgtllvvapdlrlte....eelaallewvarGntlvla 68
                v+++ + + +l +  ++ t ++++++  lt+      + a+l++v++G++ v++
  CCE27257.1 41 VKDANSALQQLSRqpSP-TAVLITDE-ALTQghcrHVWSAVLRYVRSGGKAVIM 92
                44444444455324345.55555555.444446**99***************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.89
     DUF4350  26 kpfdaleg.......edgtllvva 42 
                 kpf+a ++        ++t +v++
  CCE27257.1 105 KPFFAHADlpwecgsYHRTTVVLN 128
                 677777766776666566777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1709.45
//
Query:       CCE27258.1  [L=434]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-28   99.0   0.0    8.8e-15   54.8   0.0    2.1  2  Pkinase      Protein kinase domain
    1.5e-15   57.2   0.0    3.8e-08   32.9   0.0    2.1  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   6.8e-15   6.1e-11       1     130 [.      73     209 ..      73     223 .. 0.91
   2 !   54.8   0.0   9.8e-19   8.8e-15     136     264 .]     270     427 ..     261     427 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 6.8e-15
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHH..H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk..hpnivrlyevfee....kdelylvleyveggeladlle..r 91 
                 y+ l+klG G+f++   a+++++++ vA+K+   e + +++  kvlr ++ l + +  + ++ rl++ f+      ++ +lvle+v  g  + +le  +
  CCE27258.1  73 YKILHKLGWGGFATTWAAKDRKDDCYVAIKIATSELQHSREL-KVLRALSALPQNHpgSAHVNRLLDHFTLvgpnGTHNCLVLELVGPGVQELVLErfK 170
                 77899***************************9999999886.89999999988888999*********98888899************8777777776 PP

                 HSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEE CS
     Pkinase  92 kgslseeeakkiakqilegleylHskgiiHrDlKpeNiL 130
                 +  l+++ ak ++kq l+gl++l +++i H Dl + N+ 
  CCE27258.1 171 DYRLPSRLAKVFVKQALQGLDFLAANNIGHGDLHTRNLA 209
                 777**********************************85 PP

  == domain 2  score: 54.8 bits;  conditional E-value: 9.8e-19
                 EEEE-SGTTSEESSSSCSBCTTTSCGGGS.-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.....SHH...H CS
     Pkinase 136 elKitDFGlakelessskltsfvgtseYl.APEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.....etkeklp 228
                  +Ki+DFG a   +      s   t+ Yl APE++ + + ++ vD+Ws+G++++el+tg+ppf       + ++++ q+    ++       +++ k++
  CCE27258.1 270 SIKIIDFGEAFFSNDAP---STLQTPLYLqAPEIVFGDRLDRRVDLWSAGCLIFELVTGQPPFDTVAM--TPARIVGQMI---EVTSdevpsKWQAKWH 360
                 59*******99888855...7788888865**********************************4444..3466666633...3333333445556666 PP

                 HHTTS............................-HHHHHH...HHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 229 easei............................seeakdl...lkkllkkdpkkRltaeellqhpyl 264
                   ++                             see+ d+   +  +l+ +p+ R t +e l+  ++
  CCE27258.1 361 AMQQEapeldggftlkkwledvyfdrnkqaeftSEEVADIcevVAAMLRFEPSLRATPSESLARAWF 427
                 555559999************************7776665111678****************99998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   4.3e-12   3.8e-08       3     135 ..      75     209 ..      73     217 .. 0.90
   2 !   22.1   0.0   8.7e-09   7.8e-05     141     236 ..     270     361 ..     266     369 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 4.3e-12
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS..-BTTB--EEEEEE....SSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl..khpnivkllgvct....keepllivteyvkgGdLlkfLrk 94 
                  + +klG G f++ + ++ +    k+++ Va+K+ ++e +++++ ++l+ ++ + +      ++ +ll   t    ++ + ++v+e+v  G  +  L++
   CCE27258.1  75 ILHKLGWGGFATTWAAKDR----KDDCYVAIKIATSELQHSRELKVLRALSALPQNhpGSAHVNRLLDHFTlvgpNGTHNCLVLELVGPGVQELVLER 168
                  6789999999999998888....999***************************88755688999999999977777777******************* PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEE CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvL 135
                   ++ +l  +    f+ q  +G+++L+++++ H dl +rN  
   CCE27258.1 169 FKDYRLPSRLAKVFVKQALQGLDFLAANNIGHGDLHTRNLA 209
                  988888888888899999*********************75 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 8.7e-09
                  EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS..HHHHHHHHHHTTEES-BBTTSBHHHHH CS
  Pkinase_Tyr 141 vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypgl..kneevleklkegkrlekpekcpeelye 236
                   +ki DfG a          + ++ ++p+   apE+++  ++  + D Ws G l++E++t g+ p+ ++  ++++++ ++ e +  e p+k++++++ 
   CCE27258.1 270 SIKIIDFGEAFFS-----NDAPSTLQTPLYLQAPEIVFGDRLDRRVDLWSAGCLIFELVT-GQPPFDTVamTPARIVGQMIEVTSDEVPSKWQAKWHA 361
                  5788888866655.....33445678899999****************************.****987654888899988888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 3008.84
//
Query:       CCE27259.1  [L=713]
Description: uncharacterized protein CPUR_00731 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 5409.81
//
Query:       CCE27260.1  [L=234]
Description: related to pre-mRNA splicing factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-82  276.2   0.7    3.1e-82  276.0   0.7    1.0  1  Isy1      Isy1-like splicing family
  ------ inclusion threshold ------
      0.022   14.8   0.7      0.043   13.9   0.0    1.8  2  YolD      YolD-like protein


Domain annotation for each model (and alignments):
>> Isy1  Isy1-like splicing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.0   0.7   3.4e-86   3.1e-82      11     255 .]       1     233 [.       1     233 [. 0.95

  Alignments for each domain:
  == domain 1  score: 276.0 bits;  conditional E-value: 3.4e-86
        Isy1  11 mLnRfreakaeekgllekkr.rRPklasevkslkeaekwrrqvirEIsrkvakIqdaglgeyqiRdlNDeiNkLlrekrhWekrIkeLgGpdykrkapk 108
                 mL+Rfrea+a+++g+++ +r rRPk+++ev+s++ +ekwr+qv++EIsrkv++I+++ l++yqiRdlNDeiNkL+rek++We +I++LgGp+y r++ +
  CCE27260.1   1 MLFRFREAQAADLGIIDVGRsRRPKVITEVESVPVCEKWRGQVLKEISRKVSRIHEPVLSDYQIRDLNDEINKLMREKHMWEIQIRNLGGPNYLRTGGR 99 
                 9*****************999****************************************************************************** PP

        Isy1 109 mldeegkevpgk.kgyrYFGrAkeLPgVkelfekekkkeekkkk..eraelfknidadYYGy.rdeedgvlleleaeaekeareeavwkeekeeeeeee 203
                 ++de+g+e+pg  kgy+YFGrAkeLPgVkelfe++++k+++++k   ++e+++n+da+YYGy  deed++ll++eae+e+  +e+ +            
  CCE27260.1 100 IYDEAGREIPGGgKGYKYFGRAKELPGVKELFEAAQTKNKQQDKpeAEKEIRRNVDAAYYGYgPDEEDEKLLAYEAERERLVFEDML------------ 186
                 *********9988*********************99666655554377899***********889999****************999............ PP

        Isy1 204 ekekeeeeeeeeeeeeseeekkefvalhvpvpsqeeiekallekkKkeLlek 255
                  k+  +e  e +   + +++++e ++    +p+ ee+++ l+e++K++Ll++
  CCE27260.1 187 -KNGPQEPPEGWVPLPGDTADGEIWE----LPTMEEVQQELVERRKQKLLDQ 233
                 .4556778999***************....*******************975 PP

>> YolD  YolD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.8e-06     0.043       8      50 ..      43      85 ..      41     102 .. 0.87
   2 ?   -2.8   0.2      0.76   6.8e+03       7      23 ..     132     145 ..     125     151 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.8e-06
        YolD  8 alrelkeeqkkvekpeLDeqqleeineklqealeeeqpvtity 50
                 l+e+ ++ ++++ p+L++ q++++n  +++ ++e++  +i++
  CCE27260.1 43 VLKEISRKVSRIHEPVLSDYQIRDLNDEINKLMREKHMWEIQI 85
                58999*******************************9888776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.76
        YolD   7 ealrelkeeqkkvekpe 23 
                 ea ++  ++q+   kpe
  CCE27260.1 132 EAAQTKNKQQD---KPE 145
                 33333333333...444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1684.83
//
Query:       CCE27261.1  [L=454]
Description: related to oligosaccharyltransferase 48K subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.3e-163  544.7   0.0   1.5e-163  544.5   0.0    1.0  1  DDOST_48kD  Oligosaccharyltransferase 48 kDa subunit beta
  ------ inclusion threshold ------
       0.14   12.0   0.0       0.23   11.3   0.0    1.3  1  DUF928      Domain of Unknown Function (DUF928)


Domain annotation for each model (and alignments):
>> DDOST_48kD  Oligosaccharyltransferase 48 kDa subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  544.5   0.0  1.7e-167  1.5e-163       1     413 [.      26     449 ..      26     451 .. 0.97

  Alignments for each domain:
  == domain 1  score: 544.5 bits;  conditional E-value: 1.7e-167
  DDOST_48kD   1 vLvvldseaekeeyskflksLeergfeltfksakdeslsLfkygerkYdhlillapkvkelgksltpkallefvnkggniLvalsssk.lpesirslls 98 
                 +Lvvld+ aek++y++f+ +L+erg++++++++++++++Lf+ ger+Ydhl++l+ kvk+lg++ltp+ l++f+n++gn+Lvalss+  +++s++ +ls
  CCE27261.1  26 LLVVLDDVAEKDSYKQFFGDLTERGYQISYETPRSSQIQLFHLGERTYDHLVFLPAKVKALGPNLTPSLLVDFINAKGNVLVALSSKIpTSSSLTAFLS 124
                 69************************************************************************************************* PP

  DDOST_48kD  99 elgiels.ergskvvDhfnydsesdaekhdvlllsspeellakvknifsekkkeeevlf.rgvgallgnnplllpiLrapstsysydpkeeeesae..e 193
                 el+i+l+ er+ +vvDhfnyd++s+ae+hdvl+l+sp++++++vk++f+     + + f +g+g++lg+  ll+p++rapst+ysydp+e++++++  +
  CCE27261.1 125 ELDITLPaERTGTVVDHFNYDTVSAAETHDVLVLDSPTSVRPGVKDYFQV---PGVLSFpHGAGHTLGSGALLTPVVRAPSTAYSYDPREQADAVDpeD 220
                 *******9****************************************93...4445669*******************************99988668 PP

  DDOST_48kD 194 afavGsqlslvaalQarnnaRvvfvGslellsdeffdakvk....kkeksgnrefakdltkWtfqekgvlrvksvehhkeeeeeenpeiYrikdevtYs 288
                  fa+G+ql+lv+ +Qarn+aR+++vGs+e+l+d+++da+v+    k++k++nref k+++ W+fqe gvl+v+++eh+ ++++e+npeiYrik+ev+Ys
  CCE27261.1 221 LFAAGKQLALVSVFQARNSARLAVVGSAEMLQDKWLDAQVSrpggKSAKTENREFSKRISGWAFQEIGVLKVNKIEHQLKGDNETNPEIYRIKNEVSYS 319
                 8*****************************************************************************88889**************** PP

  DDOST_48kD 289 ielseysndkwvPfea...ddlqLefvmLdPyirltLkpkkssedatvYstkfklPDrhGvFkFkvdYkRpgltyieekttvsvrhlahdeypR..fis 382
                 i++seys+++w P++    d+lqLef+mL+P++rl+Lk+ +s+++atvY ++f+lPD+hG+F+Fkv+YkRp+lty++ek+tvsvrh+ahde+pR  +is
  CCE27261.1 320 ISVSEYSWNTWLPYTPpssDELQLEFSMLSPFHRLNLKRIASTDSATVYGATFTLPDQHGIFNFKVNYKRPFLTYLDEKNTVSVRHMAHDEWPRsyVIS 418
                 ***************999999******************99888******************************************************* PP

  DDOST_48kD 383 sAwpYyasafsvvvgfllFvalflyskeekk 413
                 +Awp++++++++v gfl F+a+++ysk+++ 
  CCE27261.1 419 GAWPWLSGIAATVSGFLGFCAIWMYSKPTDL 449
                 ***************************9875 PP

>> DUF928  Domain of Unknown Function (DUF928)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.5e-05      0.23      34      85 ..     328     392 ..     300     408 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.5e-05
      DUF928  34 PtflfyvP.sesakevefvl............qdeegeevyqttlalpkkpgIisitlpenappL 85 
                 +t l y P s+++ ++ef++            ++ +  +vy +t++lp++ gI+++++  + p L
  CCE27261.1 328 NTWLPYTPpSSDELQLEFSMlspfhrlnlkriASTDSATVYGATFTLPDQHGIFNFKVNYKRPFL 392
                 47788999988999****999****999987644444679*****************99877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3466.20
//
Query:       CCE27262.1  [L=75]
Description: probable NADH2 dehydrogenase (ubiquinone) 9.5K protein, ubiquinone-binding [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   14.7   0.2      0.038   14.3   0.2    1.1  1  NADHdh_A3  NADH dehydrogenase 1 alpha subcomplex subunit 3


Domain annotation for each model (and alignments):
>> NADHdh_A3  NADH dehydrogenase 1 alpha subcomplex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   2.1e-06     0.038       5      52 ..      16      65 ..      12      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.1e-06
   NADHdh_A3  5 nawakepvlvvsfvigsla.vilpllspytkYsvminka.tpynypvPvr 52
                 a  + p+l  s++ig  + v++ ++ p  +Y   ++ a +p +ypvP+ 
  CCE27262.1 16 WASRERPALYWSVIIGLAGpVVMVVVPPVRRYFGDVDPApVPLTYPVPTG 65
                4567889********988658888999999***99998769*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 557.42
//
Query:       CCE27263.1  [L=2561]
Description: related to beige protein homolog [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.2e-118  394.1   0.0   5.1e-118  393.4   0.0    1.3  1  Beach        Beige/BEACH domain
    1.3e-10   41.2   0.0    3.3e-10   40.0   0.0    1.7  1  PH_BEACH     PH domain associated with Beige/BEACH
    7.8e-09   35.8   0.0    1.7e-08   34.8   0.0    1.5  1  Laminin_G_3  Concanavalin A-like lectin/glucanases superfamil
    2.4e-05   25.0   3.7       0.53   11.2   0.0    5.0  4  WD40         WD domain, G-beta repeat
     0.0011   18.3   0.0     0.0045   16.3   0.0    2.0  1  DUF4704      Domain of unknown function (DUF4704)
  ------ inclusion threshold ------
       0.18   11.1   0.0       0.34   10.2   0.0    1.3  1  CmlA_N       Diiron non-heme beta-hydroxylase N-terminal doma


Domain annotation for each model (and alignments):
>> Beach  Beige/BEACH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.4   0.0  1.7e-121  5.1e-118       2     276 .]    1966    2244 ..    1965    2244 .. 0.98

  Alignments for each domain:
  == domain 1  score: 393.4 bits;  conditional E-value: 1.7e-121
       Beach    2 kWqkgeisnfeYLmalNtlagRsfndlsqYpvfPwvlkdyeseeldledektyRdLskpigalneerleklkeryeelee.eepkflygshyssaai 97  
                  +Wqkge+snf+YLm++Nt+agR+fndl+qYpvfPw+l+dy+se+ldled+ t+RdLskp+ga++++r + + e+y+ l+e  +++f+yg+hyssa+i
  CCE27263.1 1966 RWQKGEVSNFHYLMMVNTMAGRTFNDLTQYPVFPWILADYTSEDLDLEDPATFRDLSKPMGAQTPSRVSGFLETYSALKEiGQTPFHYGTHYSSAMI 2062
                  8****************************************************************************877799************** PP

       Beach   98 vlyylvRlePftelalelqsgkfdvadrlfksieeawesvt.esesdvkEliPeffylpefllnsnnldlglkq.e.ekvddVeLPpwakkspeeFv 191 
                  v +yl+Rl Pf++  l +q+++fd+adrlf+s+ +aw s++ ++++dv+EliPeff+lpefl+n nn+d+g +q +  kvd+VeLPpwak++p+ F+
  CCE27263.1 2063 VSSYLIRLPPFVQSYLLVQGDSFDHADRLFQSVGDAWASASsKNKTDVRELIPEFFCLPEFLTNVNNYDFGHRQsTgAKVDHVELPPWAKGDPQIFI 2159
                  ****************************************96799**************************9985589******************* PP

       Beach  192 rihreaLeseyvsenLheWIDliFGykqrgeeavkaknvfhpltyegevdlekiedeeekkaieaqikefGqtPkqlfkkphpkr 276 
                   +hreaLes yvsenLh+WIDl+FG kqrg++a ++ nvfh+l+y+g+ dl+ki+d +e++ +   i++fGqtP+q+f+kphp+r
  CCE27263.1 2160 AKHREALESPYVSENLHHWIDLVFGHKQRGDAAEENLNVFHHLSYAGASDLDKIADASERAITAGVIHNFGQTPHQVFSKPHPTR 2244
                  ************************************************************99999******************87 PP

>> PH_BEACH  PH domain associated with Beige/BEACH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   1.1e-13   3.3e-10      34      99 ..    1843    1908 ..    1788    1909 .. 0.78

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 1.1e-13
    PH_BEACH   34 eseeeseltadkkkkdkewklseikevhlrrYlLrktAlEiFladrtsllfnFeskkerrkvlkal 99  
                  ++ e++++++ +++ +++wk +++    +rr+l+r++A+EiF++d++s+l++  ++++r+ v+ +l
  CCE27263.1 1843 KTLEKRQHAGMRDQDSRHWKWHDVISFSKRRFLFRDVAIEIFFTDGRSYLLTMINSGVRDTVYGKL 1908
                  455666777788889999********************************************9887 PP

>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   5.6e-12   1.7e-08      13     110 ..     393     500 ..     378     530 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 5.6e-12
  Laminin_G_3  13 slptssfTvsaWvkpdslpsaaqiiis...sssdgrgfelgl.dgsg.rlrfsvnagngaeesvtsgasvpageWtHvavtyd......ggtlrlYvN 99 
                  + +t+++T++aW+++d+ + +++++i+   ++s++  f l + ++++ ++ ++++   ++++    + s++++ W+H+av++       +++++lYvN
   CCE27263.1 393 PQSTAGYTFTAWIRVDNFDPTSHTTIFgvfDASQT-CFVLMYlERDTrNFILQTSVLAKNPSVRFKSVSFSEKIWYHIAVIHRrpkamtASKASLYVN 489
                  45699************999988877777744444.55555435555455555555554455555899*****************9988888****** PP

  Laminin_G_3 100 Gvevgsatltg 110
                  G+ +++   + 
   CCE27263.1 490 GEFAEEMRCNY 500
                  **887765544 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.013        40       5      37 ..    2331    2358 ..    2327    2359 .. 0.76
   2 !   11.2   0.0   0.00018      0.53       7      38 .]    2376    2408 ..    2370    2408 .. 0.86
   3 ?    3.4   0.0     0.055   1.6e+02      13      37 ..    2481    2498 ..    2467    2499 .. 0.76
   4 ?    1.9   0.1      0.16   4.9e+02      12      38 .]    2531    2555 ..    2515    2555 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.013
                  EEEESSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40    5 rtltGHssvtslafspdgawlasGsdDgtvriW 37  
                  ++  G+  +++ +f +++++++ +++D+ v ++
  CCE27263.1 2331 HI--GQ--ISCACFADSKTLIT-AGEDCVVSVY 2358
                  44..44..99999999999986.566**99886 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00018
                  EESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    7 ltGHss.vtslafspdgawlasGsdDgtvriWd 38  
                    GH+  vt++a+s++ + ++++s Dg   +Wd
  CCE27263.1 2376 VFGHKTlVTAIAVSKSFSTFVTASADGQAFLWD 2408
                  449*7779****9999999999*99*******9 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.055
                  E.EEEEEETTSSEEEEEETTSEEEEE CS
        WD40   13 v.tslafspdgawlasGsdDgtvriW 37  
                    ++l        +++G+ +g v iW
  CCE27263.1 2481 LeNCL--------IFTGHSKGRVNIW 2498
                  45788........99**88******* PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.16
                  SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   12 svtslafspdgawlasGsdDgtvriWd 38  
                  ++t++   p  + + +G++Dg v+ W+
  CCE27263.1 2531 GITCI--TPMPTCVYTGDEDGRVYEWN 2555
                  39999..77777788********9997 PP

>> DUF4704  Domain of unknown function (DUF4704)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.5e-06    0.0045      61     184 ..     739     885 ..     724     887 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.5e-06
     DUF4704  61 llsliaelleasstnqqqlvqtkGflvlaflLqkvspk..hLtr...................evleallslakvlkelnssaskvLlrdlldk.vlfn 137
                  ++++++ +++s +n + + + +G  +l+ lL+       ++                     ++l+ +l+l+ +    ++ + + +++ l  + +l++
  CCE27263.1 739 AVEIMFHCIRNSWRNSEAMERDNGYGILGMLLRFKIGYgsQIAGgsaaarlsisnkdrdslmfRILSLILELVGYNH--SNPIDSFIVNPLAYRiLLID 835
                 5789999999*******************999864433246666888888999999999777788888888888877..5556777777665551678* PP

     DUF4704 138 pklWiyadveVQkkLyqfLatefledesilknvrrvs...tvlrlldtlk 184
                   +W ++ + +Q+  y++ +t  +++++   n rr++    v rlld++k
  CCE27263.1 836 LDIWRRSAPRIQELYYKQFLTFSVNSKHHEFNSRRLIrmrIVKRLLDAMK 885
                 ****************9888888777776666665541116889999887 PP

>> CmlA_N  Diiron non-heme beta-hydroxylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00011      0.34     152     218 ..     423     490 ..     420     498 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00011
      CmlA_N 152 keelQsvalslleederpfvlstPrLpdeeslelk.lpFadkalDeLfrareepqsleeiaealgiak 218
                 + ++ ++ l  le+d+r+f+l t +L+++ s+ +k ++F++k++ +++  +++p++++  +  l ++ 
  CCE27263.1 423 DASQTCFVLMYLERDTRNFILQTSVLAKNPSVRFKsVSFSEKIWYHIAVIHRRPKAMTASKASLYVNG 490
                 66677889999*********************996489*****************9998887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.22u 0.28s 00:00:01.50 Elapsed: 00:00:00.49
# Mc/sec: 15843.29
//
Query:       CCE27264.1  [L=530]
Description: probable subtilisin-like serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-36  124.2   7.4    1.1e-35  123.3   7.4    1.4  1  Peptidase_S8  Subtilase family
    3.1e-20   72.6   2.7    5.6e-20   71.8   0.1    2.4  2  Inhibitor_I9  Peptidase inhibitor I9
  ------ inclusion threshold ------
      0.045   13.7   2.3       0.39   10.7   1.9    2.2  2  Focal_AT      Focal adhesion targeting region


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   7.4   1.9e-39   1.1e-35       8     280 ..     191     432 ..     184     453 .. 0.89

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 1.9e-39
                   EECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SSTTSB-H CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   8 vlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvldtsggsm 104
                   v+DtG + +h+d++                    ++a+  +t+++ ++d++gn   HGth+ G++a++      k gva +a +++vkvl  +g+ +
    CCE27264.1 191 VIDTGTNVDHVDFE--------------------GRAKWGKTIPSGDADEDGNG--HGTHCSGTIAGK------KYGVAKKAHVYAVKVLRSNGSGS 259
                   89999999999988....................78889999999999999977..************......9***************8888776 PP

                   H..HHHHHHHHHHHHCT-S................EEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTST CS
                   xxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 105 etgteliraieeaaedkvd................vinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsk 185
                      +++++++e aa+ + +                v nmslg     +kt+   +  a+n+av + gv + ++aGN++       a +  ++ps ++
    CCE27264.1 260 M--SDVVKGVEFAANRHDEqvkaakdgkrkgfkgsVANMSLG----GGKTSALDA--AVNAAV-EAGVHFAVAAGNDN-------ADACNYSPSAAE 340
                   4..9***********6555799********************....666666655..9*****.99************.......55666899999* PP

                   TCEEEEEESTTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT.........--HHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxx RF
  Peptidase_S8 186 nvitvgayttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpk.........ltpetv 273
                     itvga + +++ a+fS++G+++      di apG ni+stw   +        ++++sGTSmAsP+++g +A  ls  p+         +tp+++
    CCE27264.1 341 LPITVGASSLDDSRAYFSNYGKCT------DIFAPGLNILSTWIGSK------YAVNTISGTSMASPHICGLLAYYLSLQPAsdseysvasITPKQL 425
                   ************************......6*************999......33789***********************99***9999999999* PP

                   HHHHHCC CS
                   xxxxxxx RF
  Peptidase_S8 274 raallnt 280
                   +++l++ 
    CCE27264.1 426 KDTLIKI 432
                   **99975 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.1   9.3e-24   5.6e-20       1      82 []      41     133 ..      41     133 .. 0.91
   2 ?    0.2   0.3      0.21   1.3e+03      60      77 ..     470     487 ..     468     491 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 9.3e-24
                   EEEEEE-TTS-HHHHHHHHHHHHH....H.......HHHTT.......--EEEEEEESS.SSSEEEEEE-GGGHHHHHTSTTEEEEEEEEEEEE- CS
  Inhibitor_I9   1 vYIVtfkeaakaakkassheswhqsllks.......vlkge.....dsakagilysYki.lfnGfavklteeqaeklrkrpeVesVepDqsvrla 82 
                   +YI++fk+++++ak a++h+ w++++++        + +++      +a+ g +++Y+  +f+G++++++e+++ek+r++p+Ve++e+D++vr++
    CCE27264.1  41 SYIIKFKDGVDEAK-ADQHHAWVKDIHQGdeeerfeL-RKRnlgspVDAFSGTKHTYNFgGFKGYSGHFHESVIEKVRNHPDVEFIEKDSIVRTM 133
                   6*************.***********99978887752.333577789**********************************************96 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.21
                   GHHHHHTSTTEEEEEEEE CS
  Inhibitor_I9  60 qaeklrkrpeVesVepDq 77 
                   q  + +++++Ve+V++D+
    CCE27264.1 470 QTSQASEMKKVEKVVKDE 487
                   566778999*******97 PP

>> Focal_AT  Focal adhesion targeting region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.078   4.6e+02      22      45 ..      43      66 ..      33      69 .. 0.88
   2 ?   10.7   1.9   6.6e-05      0.39      30      88 ..     470     528 ..     461     530 .] 0.90

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.078
    Focal_AT 22 vvelsqevetakaeeyvslvksvg 45
                +++ + +v++aka+++   vk++ 
  CCE27264.1 43 IIKFKDGVDEAKADQHHAWVKDIH 66
                788999***************996 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 6.6e-05
    Focal_AT  30 etakaeeyvslvksvglelrkLltsvdellsslpasarreielaekvlskdlaelisam 88 
                 +t++a+e  ++ k v +e ++   +v + +++l+a++++ +e ++ v++k++++lis++
  CCE27264.1 470 QTSQASEMKKVEKVVKDEAQDVSLKVIKGIKHLSAETEKLVEKVHSVIDKEIEHLISEI 528
                 5667777778889999999*************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3779.13
//
Query:       CCE27265.1  [L=873]
Description: uncharacterized protein CPUR_00737 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 6307.23
//
Query:       CCE27266.1  [L=611]
Description: related to acetylhydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-34  118.3   0.0    9.6e-33  113.2   0.0    2.0  2  PAF-AH_p_II      Platelet-activating factor acetylhydrolase, 
    0.00044   19.2   0.3      0.004   16.1   0.2    2.1  1  Chlorophyllase2  Chlorophyllase enzyme
      0.003   16.9   2.2        0.4    9.9   0.1    2.7  3  Hydrolase_4      Serine aminopeptidase, S33
  ------ inclusion threshold ------
       0.06   12.4   0.0       0.17   10.8   0.0    1.7  2  Chlorophyllase   Chlorophyllase
       0.11   10.9   9.4       0.17   10.2   9.4    1.2  1  Herpes_pp85      Herpesvirus phosphoprotein 85 (HHV6-7 U14/HC
       0.38    9.3   6.8       0.52    8.8   6.8    1.1  1  Macoilin         Macoilin family
       0.57   11.0   8.1        1.4    9.8   8.1    1.6  1  Chorion_2        Chorion family 2
        4.7    7.0  10.0        1.2    9.0   2.9    2.5  2  DUF1635          Protein of unknown function (DUF1635)


Domain annotation for each model (and alignments):
>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.0   4.3e-36   9.6e-33       9     247 ..     119     400 ..     115     412 .. 0.81
   2 ?    2.9   0.0     0.014        32     271     351 ..     460     549 ..     454     561 .. 0.79

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 4.3e-36
                  S---SSSSEEE...................EEEEEESSSTTSEEEEEEEEE..S.SSSS-EEESS-SHH..HHHHHHHHHTS-HHHHHHH.HHHH... CS
  PAF-AH_p_II   9 lpavsGpysvG...................CedlmieeklrgvflRlyypld.kadedredelWlPkke..yaqGlsevlkasrlllnllfkllv... 81 
                  lpa+sGp++vG                    ed     +l++v + lyyp++ + + ++  + W+Pk     a+G +++++  ++l++ +f+  +   
   CCE27266.1 119 LPAYSGPHAVGtmdlevavpeprlvsdsifKEDGSPAFELQTVLFTLYYPTErDYQSPHRRHYWIPKPIslKARGYAKFAHIDNMLVRPIFTFFLwai 216
                  89**********************8777766666667778************6567789999****97511478***********9999988643333 PP

                  .TT-EEEEEET--B......--S....S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT............. CS
  PAF-AH_p_II  82 .gslrlpvkknell......ktk....ekyPlivFsHGLgafRtlYsalcielAskGfvvaavEHrDesAaatyvlkdklaaeee....eevve...s 161
                   gs+++p++ +++l      +++     ++Pl+vFsHG +++Rt Y  + +elAs+G++vaa+EHrD s   + +++ ++ + ++     ++++   +
   CCE27266.1 217 aGSITIPAEVDAPLlsarspSPPdthnHQFPLLVFSHGTASSRTDYTHYLGELASRGIIVAAIEHRDGSCPGSLIMNPATPSSSGttspSTTTHqrlH 314
                  39*******99998444433233555567****************************************99998877655444331110222221113 PP

                  .--EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHH CS
  PAF-AH_p_II 162 rekewiklrkvkeeeevklrneqvkqRaqEcskaLkllreinlGepvenvldsdfdlqqlKdnldtskvaviGHsFGgAtviksls 247
                   +++ + l ++++ ++ +l+ eq+ +R  E+  +++ ++ i++ e      ++  +l+++ + +d++k++v+GHs+G+  +++ l 
   CCE27266.1 315 FQESDLLLANKSAMTTPQLKIEQLAFRDAEIAATISTMQAIHANESLISSRGEGQHLHTFAQRIDMTKLIVAGHSYGATGALQFLK 400
                  47788888889999999************************999888888888899*********************999987665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.014
                  GG--S-EEEEEETTT--HHHHHHHHT...........T--TTS-EEEEEETT--GGGGSGGGGSS-HHHHHHTTSS-SS-HHHHHHHHHHHH CS
  PAF-AH_p_II 271 skvrqPllfinsekfqtaedikkmkk...........vvslkkeskvitvkGsvHqnfsDftfvlgkligkvlklkgeidpeealdiankas 351
                   k+  Pll++ s+++ ++++++  +            v+        +t  G+ H + +D +++ + l+    ++  ++d++ al+  +  s
   CCE27266.1 460 TKITTPLLIVHSNSWSRTHSVFFGRPhfdtvrdlarqVLRATGAAWFLTSLGTSHPSVTDAPLLEPLLLSW--TTGANLDTKAALREYVCVS 549
                  57899999999999999999988777788888888889999999999****************99987753..4445556666665555555 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   1.8e-06     0.004      12     113 ..     241     404 ..     236     421 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.8e-06
  Chlorophyllase2  12 teageYpvllflhGylllnslYsqlLkhiashgfivvap....................................................... 50 
                      t++ ++p+l+f hG+    + Y++ L ++as g iv a                                                        
       CCE27266.1 241 THNHQFPLLVFSHGTASSRTDYTHYLGELASRGIIVAAIehrdgscpgslimnpatpsssgttspsttthqrlhfqesdlllanksamttpqlk 334
                      46789****************************9999999999999999999999999999999999999999999999999988888887442 PP

  Chlorophyllase2  51 ..qlykvaeadakeiksaakvlnWlakg..Lesvlp..........eevepdlsklalsgHSrGgktafalalgkak 113
                        q   +a +d +ei ++   ++ ++++  L                  + d++kl ++gHS G+  a++   ++  
       CCE27266.1 335 ieQ---LAFRD-AEIAATISTMQAIHANesLI---SsrgegqhlhtFAQRIDMTKLIVAGHSYGATGALQFLKQSYV 404
                      221...22222.44444444444444332221...123344433334456688899999999998888887766655 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00018       0.4       6      40 ..     248     282 ..     243     284 .. 0.95
   2 !    5.6   0.2    0.0037       8.3      68      96 ..     373     401 ..     368     413 .. 0.80
   3 ?   -1.7   0.0      0.61   1.4e+03     185     200 ..     457     472 ..     445     473 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00018
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhr 40 
                  ++v++HG a++   y +   +La +G+ v+a+ hr
   CCE27266.1 248 LLVFSHGTASSRTDYTHYLGELASRGIIVAAIEHR 282
                  689******************************98 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0037
  Hydrolase_4  68 kvkeehpelplfllGhSmGGliallyllr 96 
                  +++++   ++l++ GhS G++ al++l++
   CCE27266.1 373 TFAQRIDMTKLIVAGHSYGATGALQFLKQ 401
                  5555666779***************9954 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.61
  Hydrolase_4 185 eraakitlPllllhGe 200
                    ++kit+Pll++h+ 
   CCE27266.1 457 PLNTKITTPLLIVHSN 472
                  56789*********85 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.8e-05      0.17      42      78 ..     242     278 ..     228     289 .. 0.90
   2 ?   -3.1   0.0       1.3     3e+03     117     135 ..     378     396 ..     364     403 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.8e-05
  Chlorophyllase  42 eaGtypvvlflhGtllsnkfyskllnhiashGfivva 78 
                      + ++p+++f hGt  s ++y++ l  +as G iv a
      CCE27266.1 242 HNHQFPLLVFSHGTASSRTDYTHYLGELASRGIIVAA 278
                     4668******************************987 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
  Chlorophyllase 117 anlsklalvGhsrGGktaf 135
                      ++ kl ++Ghs G   a+
      CCE27266.1 378 IDMTKLIVAGHSYGATGAL 396
                     5789999*****9987775 PP

>> Herpes_pp85  Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   9.4   7.8e-05      0.17     412     511 ..     339     435 ..     322     446 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.8e-05
  Herpes_pp85 412 nfeegkitveevelqrlsavvieavarktGlslkrviekldraplgqesepeitegr.dlfadvfrrpvtdaaasssassssssasPnsvslpsdrss 508
                   f++ +i      +q ++a      +r  G  l+ + +++d + l        + g  +++ + +     ++ +sss ssssss s    s  s  ss
   CCE27266.1 339 AFRDAEIAATISTMQAIHANESLISSRGEGQHLHTFAQRIDMTKLIVAGHSYGATGAlQFLKQSYVSSSSSSSSSSSSSSSSSSSS----SSSSSFSS 432
                  799999*999999****999999999999**********99999877766655555403333344433334444444444444444....44555555 PP

  Herpes_pp85 509 str 511
                  +t 
   CCE27266.1 433 PTS 435
                  552 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.8   0.00023      0.52     223     347 ..     310     438 ..     293     457 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00023
    Macoilin 223 akelvevdpvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehn........esvdsklqekeymenkskskrlsksessgsesellve 313
                  + l   ++  l  n+++++    +lk+ +l  r+ + +a+ s+ ++ + +e +        +++++ +q+++ m++ + + +++  +   +  +    
  CCE27266.1 310 HQRLHFQESDLLLANKSAMTT--PQLKIEQLAFRDAEIAATISTMQAIHANE-SlissrgegQHLHTFAQRID-MTKLIVAGHSYGATGALQFLKQSYV 404
                 333433344444444444444..46677777777777777666444433333.24444444444444444444.4444444444444333332222222 PP

    Macoilin 314 esvkskssssssssnknskkasagsagssnsssk 347
                 +s++s+ssssssss+++s+++s++s +s +ss++
  CCE27266.1 405 SSSSSSSSSSSSSSSSSSSSSSSSSFSSPTSSPA 438
                 2222222233333333333333334444444444 PP

>> Chorion_2  Chorion family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   8.1   0.00061       1.4      38      63 ..     395     429 ..     354     445 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00061
   Chorion_2  38 e.........sgrrygdsspsdseaislaklalAa 63 
                           s++++++ss+s+s+++s +++++++
  CCE27266.1 395 AlqflkqsyvSSSSSSSSSSSSSSSSSSSSSSSSS 429
                 24444444443333333333333333333333333 PP

>> DUF1635  Protein of unknown function (DUF1635)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.7     0.091     2e+02     160     170 ..      47      57 ..      45      74 .. 0.86
   2 ?    9.0   2.9   0.00053       1.2      79     119 ..     404     439 ..     330     459 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.091
     DUF1635 160 LPqWrhPPPql 170
                 LP+W  PPPq 
  CCE27266.1  47 LPRWLLPPPQS 57 
                 9********95 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00053
     DUF1635  79 lsgassiederrasnnsfsssdleesivssevidptpqqqe 119
                 +s +ss+      s++s sss +++s +ss++++pt+++ +
  CCE27266.1 404 VSSSSSSS-----SSSSSSSSSSSSSSSSSSFSSPTSSPAK 439
                 22222222.....2222222222222233333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       998  (0.055664); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 4200.67
//
Query:       CCE27267.1  [L=778]
Description: uncharacterized protein CPUR_00739 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-15   57.6   0.0      2e-15   56.7   0.0    1.4  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase
    2.2e-08   33.9   0.0     0.0036   16.9   0.0    2.2  2  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    0.00019   21.0   0.2    0.00048   19.7   0.2    1.8  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   3.4e-19     2e-15       2     116 ..     193     295 ..     192     297 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 3.4e-19
  Exo_endo_phos_2   2 liisvYippsdelenlestlekllselkspkiiilGDfNakhplWgsedtdssargeeLiefleehslsllnllksgptfkssngsstiDltlt 95 
                      +++++Y++p++     ++tle ll+ ++s +++++GDfNa h  W+s +++  a g+e++e+  +h+l+lln+++ +pt+++     ++ l ++
       CCE27267.1 193 TFVNMYRSPRQ-----SETLEALLRWTPSGPTVVTGDFNASHVTWQSGRQR--ALGNEIAEWACDHALQLLNTPD-VPTHHQ---GGVLGLAFS 275
                      79*********.....99999999999988*****************7776..****************999977.888855...358****** PP

  Exo_endo_phos_2  96 sdnlalskleleeedlgSDHr 116
                      +   a+s + +   ++gSDHr
       CCE27267.1 276 NVAYAES-DVNDLRETGSDHR 295
                      *******.5555578*****8 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.6e-06     0.016       5      81 ..     500     580 ..     495     583 .. 0.73
   2 !   16.9   0.0     6e-07    0.0036     147     220 ..     613     709 ..     600     711 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.6e-06
                 T....S-EEE......-THHHHCTB--...........-------HHHH..............HCCHTS--EEEEEEBCCGCC CS
       RVT_1   5 g...pgsyRpisllsvdykalnkliakrLkdvl..ekllsenqpgfrpgrstldav.edllkalkkkkkaklllklDlkkaFd 81 
                 +   p+ yR+isl+s+++kal ++ a rL+ +   e +l ++ ++ +    + + v + l ++  k ++  +++++D+++aFd
  CCE27267.1 500 DlssPKFYRLISLTSCLGKALGRIWAWRLSHISirEGVLLPKRSATDIAAALTHDVeTALEDC--KVATMVTMVTMDVEGAFD 580
                 3666788************************97774443333333333333334455666666..888889999********9 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 6e-07
                 HHHHHTT-T......TEEECTTEEEEEESSHHH......HHHHHHHHHHHHHHTT--BEGGG-EEE..........................ESSEEET CS
       RVT_1 147 mnellrelrkrakgvtllrYaDDililskskee......lqelleaveewlkesglkinpeKtklvlft....................v.kseevkyL 218
                 ++++ + l++       + YaDD+  l+ + +       +++ +e++ +w +++ +++ p+Kt++++f                        + ++++L
  CCE27267.1 613 IQPIYQLLSQ----GERYGYADDTAQLVVGSSLeftisrASRGVEELLAWGRDNAITFDPDKTEVMHFSrrnarrddahdaplrhgdpeIiPKLTMRWL 707
                 5555566665....36689*****766666554569999*****************************9999999999999999988853799999999 PP

                 TE CS
       RVT_1 219 Gv 220
                 Gv
  CCE27267.1 708 GV 709
                 97 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2     8e-08   0.00048     143     191 ..     215     265 ..      97     358 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8e-08
                    TTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTHH..SSCESCETTTTTTT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
  Exo_endo_phos 143 rgapvivaGDfNarpsdddsrvlrtrglalapapv..glyllgggptptyv 191
                    +++p +v+GDfNa +  ++s + r+ g++ a+++   +l+ll++  +pt++
     CCE27267.1 215 PSGPTVVTGDFNASHVTWQSGRQRALGNEIAEWACdhALQLLNTPDVPTHH 265
                    5789*****************************944433333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 5614.37
//
Query:       CCE27268.1  [L=418]
Description: uncharacterized protein CPUR_00740 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-08   33.1   0.0    3.9e-07   30.3   0.0    2.0  2  RNase_H   RNase H
  ------ inclusion threshold ------
        0.2   11.5   0.0       0.35   10.7   0.0    1.4  1  RVT_3     Reverse transcriptase-like


Domain annotation for each model (and alignments):
>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.09   8.1e+02       6      17 ..     129     140 ..     125     168 .. 0.77
   2 !   30.3   0.0   4.4e-11   3.9e-07     101     142 ..     216     256 ..     180     257 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.09
                 EEEEEEEECTTT CS
     RNase_H   6 vYtDGsclgnpg 17 
                  YtDGs l n  
  CCE27268.1 129 SYTDGSLLDNGV 140
                 6*****886633 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 4.4e-11
                 HHHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H 101 kdlaellkelakkkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142
                 ++++ ++++lak ++v+++w +gH+Gv +gNe+aD++Ak++a
  CCE27268.1 216 QKVFLTFQQLAKGNNVRVRWAPGHTGV-QGNEEADEMAKRGA 256
                 45666778889****************.8**********997 PP

>> RVT_3  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.9e-05      0.35      36     123 ..     164     254 ..     132     255 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.9e-05
       RVT_3  36 gkasveeAElqALlrGLqlalklgirr...lvvegDsktvvqllngrekvksselanlldeirkllksfesvsvehipReqNrvAdalAkr 123
                 ++ +v+ AE+ + l GL ++l+l  ++   + v  D+++vv+ l gr    s+++  + ++  k  +   + +  h   ++N  Ad +Akr
  CCE27268.1 164 DRVEVFDAEAYGALYGLHICLALRAEPshcICVFPDNQSVVNRLLGRPADSSQKVFLTFQQLAKGNNVRVRWAPGHTGVQGNEEADEMAKR 254
                 567899******************99944455667***********998555555555555444444334444456666777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3180.81
//
Query:       CCE27269.1  [L=386]
Description: uncharacterized protein CPUR_00741 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 3033.88
//
Query:       CCE27270.1  [L=1324]
Description: probable polynucleotide adenylyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-18   66.6   0.2    3.5e-18   65.5   0.2    1.6  1  PAP_assoc     Cid1 family poly A polymerase
    5.1e-05   23.5   0.0    9.8e-05   22.6   0.0    1.4  1  NTP_transf_2  Nucleotidyltransferase domain


Domain annotation for each model (and alignments):
>> PAP_assoc  Cid1 family poly A polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.2     4e-22   3.5e-18       1      61 [.     509     564 ..     509     565 .. 0.94

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 4e-22
                 -HHHHHHHHHHHHHHT--TTTEEEECSST-EEEHHHHCGCS-SSEECESSSSEBEETTCCC CS
   PAP_assoc   1 sLGeLLigFFeyYgreFdyenvvisirtggiltkkekgwesaeskernrfllaIeDPfeld 61 
                 sL+eLL++FF++Y++eFdy+++v+s+r+g+++tk++k+w+         ++l++e+Pf+ +
  CCE27270.1 509 SLAELLFQFFRFYAHEFDYDKHVLSVRQGKLVTKQDKKWNY-----AINNQLCVEEPFNVS 564
                 79**************************************4.....5679********976 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.1e-08   9.8e-05       2      74 ..     315     403 ..     314     442 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.1e-08
                   HHHHHHHHHHTT..TSEEEEEHHHHCTTSCTTSSEEEEEEESTTCHHH..............HHHEHHHHHHHHCCCEEECTTEEEEEE CS
  NTP_transf_2   2 kklleelkelep..vakvvlfGSyarGtalkgSDiDllvvlpeevsre..............kkeegleklaeiikfleellglevdlv 74 
                    kl +++ +++p  +++v lfGS+ + +   +SD+D+++++++   +               k+  +  ++++i k +++ lgl +d  
    CCE27270.1 315 QKLENIFNDEWPghDIRVNLFGSSGNLLCSDDSDLDICITTSWTELEGvcmiadllarrgmeKVVCISAAKVPIVKIWDPELGLACDMN 403
                   7999***************************************9654488877777777776555566666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.25s 00:00:01.04 Elapsed: 00:00:00.40
# Mc/sec: 9861.72
//
Query:       CCE27271.1  [L=1001]
Description: uncharacterized protein CPUR_00743 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        3.4    6.9   5.8        5.2    6.3   5.8    1.2  1  NOA36           NOA36 protein
        3.5    8.1  10.0        9.3    6.7  10.0    1.7  1  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.8   0.00058       5.2     273     298 ..     799     824 ..     761     831 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00058
       NOA36 273 gdedddddddeedddeeeddedeeee 298
                 +d+dd+ + deedd e+ed+ ++e++
  CCE27271.1 799 NDDDDEREGDEEDDGEDEDEYEDEND 824
                 22222222222222222222222222 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  10.0     0.001       9.3       4      35 ..     795     825 ..     792     841 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.001
  CENP-B_dimeris   4 qlleagedsesesdeeeeeeeedeededeedd 35 
                      +l + +d e e dee++ e+ede  ede+d 
      CCE27271.1 795 SFLTNDDDDEREGDEEDDGEDEDE-YEDENDR 825
                     566666666666666666555543.3333443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.25s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 6653.20
//
Query:       CCE27272.1  [L=435]
Description: uncharacterized protein CPUR_00744 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.4e-100  334.5  19.4   8.1e-100  334.2  19.4    1.1  1  SLC35F    Solute carrier family 35
    9.7e-12   44.5   4.4    1.6e-11   43.8   4.4    1.3  1  CRT-like  CRT-like, chloroquine-resistance transporter-like
    2.5e-07   30.9  32.9    5.9e-05   23.3   9.8    2.2  2  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> SLC35F  Solute carrier family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.2  19.4  1.4e-103  8.1e-100       2     298 ..      71     369 ..      70     370 .. 0.98

  Alignments for each domain:
  == domain 1  score: 334.2 bits;  conditional E-value: 1.4e-103
      SLC35F   2 tkkllislalGqvlsllitataltskylaekkinaPvlqtflnyvllalvytgillfrrgaeklleilkrkwykylllalvdveanylvvkayqytslt 100
                 t +++i++a+Gq+l+l+itat+++++ l +++ naP++qt++nyv la++y +i l+r g   +  +  r ++kyl++a++dve+ny+ v ayqyt+++
  CCE27272.1  71 TADFWIVVAIGQILALCITATNTFTTFLNQENFNAPAFQTLFNYVFLAIIYNTIFLVRDGPRAWARVACRDGWKYLIMAFLDVEGNYFTVLAYQYTNIL 169
                 5679*********************************************************************************************** PP

      SLC35F 101 svqlldcfaipvvlvlswlflkvryrlvkiigvvvcilGvvllvvsdvlagrra..nsgsnpvlGdllvlaGatlyavsnvleeylvkklslvellgll 197
                 s+qll+ ++i++v+++s+++lkvry++ ++ g+++c  G+++l++sd ++ r +  +sg  +++Gdl+ l+Gatly+ snvlee+lv+k+++  +l+++
  CCE27272.1 170 SAQLLNFWSIVCVVLISFFLLKVRYKWAQVAGIFICCGGLGILLGSDYIVQRDSgqSSGDSKLKGDLFGLLGATLYGTSNVLEEFLVSKAPMHHVLSFM 268
                 ***********************************************99876544479999************************************** PP

      SLC35F 198 glfGaiisaiqlailerkelkaihWdaeiallfvgfalvlfllysllpilikktsatsvnlslltsdlyslliglflfhykvswlyllafvviliGlil 296
                 glfG ii ++q ai++r+ ++   W+ +++ ++vg++l+l l+y+l+p+++++ sa+++++sllt++++ ++ig+++f+  ++ +y++afv i+iGl +
  CCE27272.1 269 GLFGMIINGVQAAIFDRHTIAGSAWSGKVGGYLVGYTLCLTLFYTLAPLILRMGSAAFFDISLLTANFWGVIIGIHVFGLSIHFMYPIAFVCIIIGLAI 367
                 *************************************************************************************************** PP

      SLC35F 297 ys 298
                 y 
  CCE27272.1 368 YF 369
                 95 PP

>> CRT-like  CRT-like, chloroquine-resistance transporter-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   4.4   2.6e-15   1.6e-11      17     183 ..      88     262 ..      74     289 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 2.6e-15
    CRT-like  17 illKkvlnklkNysfflnqltnfvyvpiffavvlykllltndipketrsfpk...rkFaimgaLDavsgilvvigavstsGslqvllnqaiipitllas 112
                 i +  +  ++ N  +f     + ++  +f+a++  +++l  d p+  +++     +k++im++LD  + +++v++  +t     +lln  +i+  +l+s
  CCE27272.1  88 ITATNTFTTFLNQENFNAPAFQTLFNYVFLAIIYNTIFLVRDGPRAWARVACrdgWKYLIMAFLDVEGNYFTVLAYQYTNILSAQLLNFWSIVCVVLIS 186
                 455566777888888888888888889999999999999999998888876422279****************************************** PP

    CRT-like 113 llllkerysliqylGAlviilgvvvvlipsllg.....essegnklvfnllllisviPvalSnvykeiafkeveld 183
                 + llk ry+++q+ G ++  +g+ ++l ++ ++     +ss++ kl  +l+ l+    +  Snv  e   +++ + 
  CCE27272.1 187 FFLLKVRYKWAQVAGIFICCGGLGILLGSDYIVqrdsgQSSGDSKLKGDLFGLLGATLYGTSNVLEEFLVSKAPMH 262
                 **************************99988773333244444577788888888888888888888877777765 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   9.8   9.9e-09   5.9e-05       3     135 ..      81     212 ..      77     214 .. 0.74
   2 !   13.7  15.1   8.5e-06     0.051       2     135 ..     233     368 ..     232     370 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 9.9e-09
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl...aklslkdwllllllgllgtvlafllffyalkktsasnaslit 98 
                 g +lal+ + +  ++++l +  +    p + t + +++ +i+   i l+++g++   ++  + +w++ l++++   v ++++ + a ++t+   a l++
  CCE27272.1  81 GQILALCITATNTFTTFLNQENF--NAPAFQTLFNYVFLAIIYNTIFLVRDGPRawaRVACRDGWKY-LIMAF-LDVEGNYFTVLAYQYTNILSAQLLN 175
                 55555555555555555555533..344455556777777777777777777775744444555666.67775.5566778999*************** PP

        EamA  99 slePvftlilsvlllgekltlkqllgivlillGvlli 135
                 + + v+++++s++ll+ + ++ q++gi+++  G+ ++
  CCE27272.1 176 FWSIVCVVLISFFLLKVRYKWAQVAGIFICCGGLGIL 212
                 ******************************9998776 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 8.5e-06
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl...aklslkdwllllllgllgtvlafllffyalkktsasnasli 97 
                 +g+l+ ll+a +++++ vl   l++k +  +++ ++ l++ i+  + a+++++     + +s k +  +l+  +l+ +l++ l    l+ +sa++  + 
  CCE27272.1 233 KGDLFGLLGATLYGTSNVLEEFLVSKAPMHHVLSFMGLFGMIINGVQAAIFDRHTiagSAWSGK-VGGYLVGYTLCLTLFYTLAPLILRMGSAAFFDIS 330
                 899*****************************************99999999888764444443.577788888************************* PP

        EamA  98 tslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 ++++  + +i+++ ++g ++ ++  +++v+i++G+++ 
  CCE27272.1 331 LLTANFWGVIIGIHVFGLSIHFMYPIAFVCIIIGLAIY 368
                 **********************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3268.65
//
Query:       CCE27273.1  [L=609]
Description: uncharacterized protein CPUR_00745 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-11   42.8   1.0    1.6e-10   41.8   1.0    1.5  1  Metallophos    Calcineurin-like phosphoesterase
      0.003   17.8   0.0      0.021   15.0   0.0    2.1  2  5_nucleotid_C  5'-nucleotidase, C-terminal domain


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   1.0   1.8e-14   1.6e-10       2     203 ..      39     262 ..      38     263 .. 0.63

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.8e-14
                  EEEEEESBTB...........TTCCTHHHHHHHHHHHHHHHTTESEEEEE.STSSSSS.......HHHHHHHHHHHHHHHHTSEEEEEC-TTS..... CS
  Metallophos   2 rilvigDlHl...........algggqlddllkllddllreekpdlvlla.GDlvdrg.......dlekellellaalvkypipvylllGNHe..... 75 
                  ++l+++D+H+           +   g++ ++ + l++ +++ ++dl+++  GD v+++       +   ++ + +a+     +p +++ GNHe     
   CCE27273.1  39 NFLHTTDTHGwigghlsepqySADWGDYISFSQHLKRRADDDGVDLLIVDtGDRVEGNglydasnPKGLFYYDIWAQQ----QPDIICIGNHElyqas 132
                  79****************999888888888888888888889******999**6666634433233333333334444....456********88887 PP

                  ....................CHHHHHHHHHHHHHHH............HHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSC CS
  Metallophos  76 ....................gfeeellnkygylgif............sepwrsdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnlel 141
                                      +              +            ++ +r++ ++ ++l +++     + +l+++ g         ++++ + + 
   CCE27273.1 133 tadrevnttvpnfkgkyiasN-------------VDyidpesgerkpiAQRYRKFRTKNQGLEIVA-----FGFLFDFKG---------NANNTVVQP 203
                  777766655554443332210.............11111111122223444444444444444444.....678888888.........444444444 PP

                  HHHHCCHHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTT.ESEEEEESSSS CS
  Metallophos 142 eapepgdewlkdlekrekadwvivlgHsplyrgsgylfgdealedllkkyg.vdlvisGHtHv 203
                   a++ +++w+++   rek d  +v+gH++l    +y     al+  +++++ + + ++GH Hv
   CCE27273.1 204 VADTVKEQWFQN-AIREKPDLFVVIGHVGLR-MEEYRTIFTALR--KQNWNtPIAMLGGHAHV 262
                  444444999999.******************.222222222222..44444677789999996 PP

>> 5_nucleotid_C  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.099   8.9e+02      34      79 ..     280     323 ..     259     362 .. 0.76
   2 !   15.0   0.0   2.4e-06     0.021      31      67 ..     387     431 ..     363     436 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.099
                    STT--EEEEEGGG----BTTTEEEHHHHHHHS-S--EEEEEEEEHH CS
  5_nucleotid_C  34 aagadialangggiradlpaGditvkdlltvlpfgntlvvveltGa 79 
                    ++++ i++++  gi  + + G+++ +  ++ l+f+ + +  +l G 
     CCE27273.1 280 YFET-IGFMSIDGIGHK-STGQVSSETTASSLKFNRKYIDTNLLGM 323
                    4444.999999999665.77*******9999999988887777765 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.4e-06
                    H........TGSTT--EEEEEGGG----BTTTEEEHHHHHHHS-S CS
  5_nucleotid_C  31 l........raaagadialangggiradlpaGditvkdlltvlpf 67 
                    +        +++ +  +a++n ggir+d+++G+ t++  + v pf
     CCE27273.1 387 VfpdilvneKRKDKSRLAIMNTGGIRFDIFQGPFTRGSTYLVSPF 431
                    44555555555556679***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4525.05
//
Query:       CCE27274.1  [L=974]
Description: uncharacterized protein CPUR_00746 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-69  233.6   0.0    3.1e-69  232.9   0.0    1.3  1  EMC1_C    ER membrane protein complex subunit 1, C-terminal
    1.3e-22   80.5  14.9    5.4e-21   75.3   5.8    2.9  3  PQQ_2     PQQ-like domain
     0.0014   18.5   4.6        3.1    7.9   0.1    4.8  4  PQQ       PQQ enzyme repeat
  ------ inclusion threshold ------
       0.13   12.1   0.3       0.54   10.1   0.1    2.0  2  CAAX_1    CAAX box cerebral protein 1


Domain annotation for each model (and alignments):
>> EMC1_C  ER membrane protein complex subunit 1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.9   0.0   6.9e-73   3.1e-69       1     213 []     740     970 ..     740     970 .. 0.99

  Alignments for each domain:
  == domain 1  score: 232.9 bits;  conditional E-value: 6.9e-73
      EMC1_C   1 sEnwivysyfne.........kkkrqeivvveLyeskesnereklssaanssslea......velpevlsqsfifpegikalavttTkkgItsksll.l 83 
                 +Enw+ +++f +         + k+++iv+ +L+es esn+r++l++++++ssl++      v+lp v sq+ ++++++++l++t+T +gIt+++ll +
  CCE27274.1 740 AENWYSCTFFGDytvndgtnrSIKGYQIVTSDLFESPESNDRGPLGDQETFSSLNPvdtpsgVPLPWVTSQAMVLSQPLHKLTTTQTLQGITTRQLLaY 838
                 59*****************************************************99****************************************** PP

      EMC1_C  84 alesgqivslprrlldpRrpv.rkptaaeke.eglipYepllpidpksvishkrevagvkkiltaptllEStslvlafGlDlfltrvaPsksFDlLskd 180
                 ++es+ i++lpr+++dpRrpv r+ptaae e e l++Y+p+ +id + +ish+ +v+gv++i+t+p+ +EStsl+la+G+D+f+tr +Ps+ FD+L+k+
  CCE27274.1 839 LPESHGILALPRHIIDPRRPVdREPTAAEVEaESLMKYTPQFEIDGRGIISHELDVLGVEAIITTPAVVESTSLLLAYGIDVFGTRSTPSGLFDILGKG 937
                 *********************99******99999***************************************************************** PP

      EMC1_C 181 FnkilLiltvvallvlvlvlrplvkrkklnkrW 213
                 Fnk++L++tv+al+++v++l+p+v+rk++++rW
  CCE27274.1 938 FNKVTLVGTVLALFAGVMFLAPVVRRKQIDRRW 970
                 ********************************* PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   5.8   1.2e-24   5.4e-21       3     236 ..      64     319 ..      62     320 .. 0.80
   2 ?   -4.0   0.1         2     9e+03      94     105 ..     407     418 ..     368     429 .. 0.72
   3 !   10.9   0.1   5.5e-05      0.25      70     172 ..     495     595 ..     479     615 .. 0.64

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 1.2e-24
       PQQ_2   3 gvvsaldaatGaelWrvdlar..plgggvsravlsggtlfvatgggrlvaldaatGkvlWettlegpvvga.....plvaegrv.vvvasdg..qlial 91 
                 gvv a+++ +G+++Wr+ + +  ++ggg+ ra  +++++++a  g ++ a+da tG+ +W + ++g+v+        + +++ v  + ++dg  +l++l
  CCE27274.1  64 GVVGAINPSNGNVVWRQQISDgiAHGGGHLRAPEGDNWVVSA-HGSKVQAWDALTGRNIWDRHFSGQVKDVeimemTEASRKDVlTLFDEDGvtVLRRL 161
                 899**************77553359****9999666666666.************************8888776543334443357778999999999* PP

       PQQ_2  92 daedGkrlWstqqrseepaelrssaspavagdtvvvges....sgklvaldpkdGkvlWerel.aaprgtsels..rvgdisgrpvva...eg...... 174
                   + G+++W++ ++s +++++ +s+  a + +++ ++++    ++k++ ld ++G+++++ ++ +++    + +  + g +s++p+ a   +g      
  CCE27274.1 162 HGAQGNVVWEFRETS-KDTPIQVSTNIANV-HVLSLHGTpgsyNLKVTSLDTANGDRVDSWSVgSKGDIHGAEDvmFGGANSAAPIAAwtnRGlsklsi 258
                 **********66666.88884444444444.67888888899999******************9998877666677************99844555855 PP

       PQQ_2 175 tVyassgqgrllaldlatgrrlwskeissinglpildgdllyvvsa....gelialdratGavlWk 236
                 +V+    ++ ++  d +         i++++ ++ l+++l++++++    +e+++ +++tG+v+++
  CCE27274.1 259 NVLGTKTKQDVILPDDTVSV-----RIHAPHLTQSLPHFLVHITTTtghkAEVYHTNLKTGQVSKA 319
                 66666666666666444333.....4999****************55****************986 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2
       PQQ_2  94 edGkrlWstqqr 105
                 + Gk+ W++++ 
  CCE27274.1 407 RKGKVDWTRHEG 418
                 567777775544 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 5.5e-05
       PQQ_2  70 gaplvaegrvvvvasdgqliald.aedGkrlWstqqrse.epaelrssaspava.gdtvvvgessgklvaldpkdGkvlWerelaaprgtselsrvgdi 165
                  + +  ++ vv+++  g++++ld  + Gk+lWs +     + a+l++++  +++  + v v +s g+ +++++ +G+vl   +      ++  ++++ i
  CCE27274.1 495 RDVFGFNKIVVLATRRGRFYGLDtGHHGKVLWSKDVFKLpQGATLSVKGMATKGnEGLVDVIGSHGQRAVIRAISGEVLEGGKH-----EVGSESTTEI 588
                 334444555677777778888887788888888666566556667777777777766777777778888888888888443332.....2222345666 PP

       PQQ_2 166 sgrpvva 172
                 +++ v+ 
  CCE27274.1 589 TSTAVIH 595
                 6666665 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0052        23      12      31 ..      66      85 ..      57      87 .. 0.82
   2 ?   -0.4   0.0      0.28   1.3e+03      12      24 ..     110     122 ..     106     125 .. 0.87
   3 ?    2.8   0.1     0.029   1.3e+02      19      31 ..     165     177 ..     163     179 .. 0.85
   4 !    7.9   0.1   0.00069       3.1       3      27 ..     503     529 ..     501     530 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0052
                EEEEETTTCCEEEEEESSSC CS
         PQQ 12 lyAlDadTGkvlWrfktggp 31
                + A++ ++G+v+Wr ++++ 
  CCE27274.1 66 VGAINPSNGNVVWRQQISDG 85
                5588889********99876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.28
                 EEEEETTTCCEEE CS
         PQQ  12 lyAlDadTGkvlW 24 
                 + A Da TG+ +W
  CCE27274.1 110 VQAWDALTGRNIW 122
                 7788********* PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.029
                 TCCEEEEEESSSC CS
         PQQ  19 TGkvlWrfktggp 31 
                  G+v+W+f++ ++
  CCE27274.1 165 QGNVVWEFRETSK 177
                 59******99876 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.00069
                 EEEE.ETTSEEEEEETTT.CCEEEEEE CS
         PQQ   3 vylg.sadGylyAlDadT.GkvlWrfk 27 
                 +++  ++ G++y lD    GkvlW+++
  CCE27274.1 503 IVVLaTRRGRFYGLDTGHhGKVLWSKD 529
                 55555**********9999*****976 PP

>> CAAX_1  CAAX box cerebral protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00012      0.54     105     159 ..     238     290 ..     232     317 .. 0.75
   2 ?   -1.7   0.0      0.51   2.3e+03     100     120 ..     734     754 ..     722     758 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00012
      CAAX_1 105 paaswapvthwtdhplpplpspllptrlpddyiilptdlrchshrhpshptdrll 159
                  a s ap++ wt++ l  l   +l t+  +d +ilp d     + h  h t+ l 
  CCE27274.1 238 GANSAAPIAAWTNRGLSKLSINVLGTKTKQD-VILPDDTV-SVRIHAPHLTQSLP 290
                 57899**********************9998.57888753.44556667777663 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.51
      CAAX_1 100 tlscapaaswapvthwtdhpl 120
                 ++sca a +w   t++ d+ +
  CCE27274.1 734 SISCAMAENWYSCTFFGDYTV 754
                 68************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 6759.69
//
Query:       CCE27275.1  [L=945]
Description: related to apopolysialoglycoprotein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1099  (0.0612973); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.23u 0.36s 00:00:01.59 Elapsed: 00:00:00.51
# Mc/sec: 5608.28
//
Query:       CCE27276.1  [L=113]
Description: uncharacterized protein CPUR_00748 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-21   76.0   4.8    2.2e-21   75.6   4.8    1.1  1  Complex1_LYR    Complex 1 protein (LYR family)
    2.3e-09   37.8   0.8    2.5e-09   37.8   0.8    1.1  1  Complex1_LYR_2  Complex1_LYR-like
     0.0004   20.9   0.5    0.00049   20.6   0.5    1.2  1  Complex1_LYR_1  Complex1_LYR-like
  ------ inclusion threshold ------
       0.22   11.5   0.1       0.33   11.0   0.1    1.3  1  VitD-bind_III   Vitamin D binding protein, domain III


Domain annotation for each model (and alignments):
>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   4.8     5e-25   2.2e-21       1      58 [.      13      70 ..      13      71 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 5e-25
  Complex1_LYR  1 rqvLsLYRalLRearkfpdyntreyfrrriRdeFrknkhvtDpekieellkkgreeLe 58
                  ++v sLYR+lLR++++f  yn+rey++rr+Rd Fr+nk+v+D ++i+ l++kg +eLe
    CCE27276.1 13 QKVRSLYRQLLRQGEQFTAYNFREYAKRRTRDAFRENKSVQDARQIQDLVQKGLKELE 70
                  5799*****************************************************8 PP

>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.8   5.5e-13   2.5e-09       1      60 [.      15      75 ..      15     112 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 5.5e-13
  Complex1_LYR_2  1 vlsLYrrllrelrel.ppelrslgdayvraefrrhkhlknpeeialflknqreYaellery 60
                    v+sLYr+llr+ ++    + r++ +++ r++fr++k ++++ +i++++++    +ell+r+
      CCE27276.1 15 VRSLYRQLLRQGEQFtAYNFREYAKRRTRDAFRENKSVQDARQIQDLVQKGLKELELLKRQ 75
                    89**********87569*******************************************9 PP

>> Complex1_LYR_1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.5   1.1e-07   0.00049       1      48 [.      13      59 ..      13      86 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.1e-07
  Complex1_LYR_1  1 reklrlyrallkaarrfPlrsrreivaeevraafrhplndslttke.vd 48
                    +++ +lyr+ll+ +++f   + re      r afr   n s++ +  ++
      CCE27276.1 13 QKVRSLYRQLLRQGEQFTAYNFREYAKRRTRDAFR--ENKSVQDARqIQ 59
                    56789******************************..788888776333 PP

>> VitD-bind_III  Vitamin D binding protein, domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   7.4e-05      0.33       5      40 ..      28      64 ..      25      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.4e-05
  VitD-bind_III  5 dYseltFley.KkrlaeklkkklPeaspeelkelvek 40
                   +++ ++F ey K+r +++++++     ++++++lv+k
     CCE27276.1 28 QFTAYNFREYaKRRTRDAFRENKSVQDARQIQDLVQK 64
                   799*******667899*******99999****99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 850.67
//
Query:       CCE27277.1  [L=437]
Description: related to WD-repeat protein CRB3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-08   35.1   1.1      0.014   16.3   0.1    4.1  3  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.04   14.4   0.0        5.3    7.7   0.0    3.5  4  PQQ_3        PQQ-like domain
      0.068   13.5   0.0          5    7.5   0.0    3.1  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.3e-06     0.014       2      38 .]     117     152 ..     116     152 .. 0.87
   2 !   10.9   0.0   0.00012      0.69       5      38 .]     169     207 ..     165     207 .. 0.84
   3 ?    4.0   0.0     0.018   1.1e+02      14      34 ..     285     305 ..     276     309 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.3e-06
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++++t   H + vt+la+ p++ +  s+s+D ++++W+
  CCE27277.1 117 RQVTTPPCHvQAVTCLAVTPYHLL--SASEDSNIHVWS 152
                 56788899*999****99999877..8999*******5 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00012
                 EEEESS.SSEEEEE....EETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtsla....fspdgawlasGsdDgtvriWd 38 
                  tl+ H + v +l     ++p+ ++ +s+s D+t+ +W+
  CCE27277.1 169 LTLSNHrGAVVDLLvapsTNPETSLCVSASTDKTCILWN 207
                 5788887778888888889999999999999*******8 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.018
                 EEEEEETTSSEEEEEETTSEE CS
        WD40  14 tslafspdgawlasGsdDgtv 34 
                 t+l++s dg+ +++G+  g++
  CCE27277.1 285 TCLSVSYDGTSVLTGHTRGKI 305
                 8**************866665 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.5   8.9e+03      17      27 ..      48      62 ..      36      65 .. 0.73
   2 ?    7.7   0.0   0.00089       5.3       9      33 ..      85     108 ..      83     122 .. 0.91
   3 ?    2.3   0.0     0.044   2.6e+02      19      36 ..     230     247 ..     204     249 .. 0.69
   4 ?   -1.9   0.0      0.92   5.5e+03      16      33 ..     288     305 ..     279     307 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.5
       PQQ_3 17 p....avdgglvyvg 27
                p    a+++ +++++
  CCE27277.1 48 PshclAISDTHIFAA 62
                355559999999986 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00089
       PQQ_3   9 lpgpvnsspavdgglvyvgtgdGtl 33 
                 +p+++ +s+a++g+++  gt  G+l
  CCE27277.1  85 FPERI-RSLALAGDVLILGTAEGRL 108
                 57788.89*************9998 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.044
       PQQ_3  19 vdgglvyvgtgdGtlyAl 36 
                 ++ + ++v ++dG+ly +
  CCE27277.1 230 ASSRALFVCAEDGGLYLV 247
                 456789*********965 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.92
       PQQ_3  16 spavdgglvyvgtgdGtl 33 
                 s+ +dg  v +g + G++
  CCE27277.1 288 SVSYDGTSVLTGHTRGKI 305
                 457788889988888876 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00084         5      41      88 ..      89     133 ..      55     135 .. 0.83
   2 ?   -1.0   0.0      0.37   2.2e+03      52      76 ..     193     217 ..     181     225 .. 0.73
   3 ?    1.6   0.0     0.056   3.3e+02      34      64 ..     277     307 ..     262     328 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00084
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  +rsLa    g +L  ++++g++ l +  +g+ v + +++ + avtcl 
   CCE27277.1  89 IRSLA--LAGDVLILGTAEGRLILWETCTGRQVTTPPCHVQ-AVTCLA 133
                  56665..4689****************************99.6***95 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.37
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhsl 76 
                  l + a  d ++ l + +sg+v+++l
   CCE27277.1 193 LCVSASTDKTCILWNYHSGQVLRTL 217
                  3444556778888888888888765 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.056
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrl 64 
                  +dked+  ++L+ + dg+    ++  g+++ 
   CCE27277.1 277 TDKEDGPATCLSVSYDGTSVLTGHTRGKIQR 307
                  6899***********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3121.17
//
Query:       CCE27278.1  [L=722]
Description: uncharacterized protein CPUR_00750 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 5333.41
//
Query:       CCE27279.1  [L=289]
Description: probable acetylxylan esterase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-49  167.7   2.2      3e-49  167.4   2.2    1.1  1  Cutinase  Cutinase
    3.4e-05   23.5   0.0    4.4e-05   23.2   0.0    1.2  1  PE-PPE    PE-PPE domain
  ------ inclusion threshold ------
        2.3    8.6   4.4        1.5    9.2   2.7    1.5  2  DUF1180   Protein of unknown function (DUF1180)


Domain annotation for each model (and alignments):
>> Cutinase  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.4   2.2   4.9e-53     3e-49       1     177 [.      80     284 ..      80     285 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.4 bits;  conditional E-value: 4.9e-53
                 ---SEEEEEE--TT--TTTSSHHHHHHHHHHHH.TTT-EEEEE------CGG......STTSS-HHHHHHHHHHHHHHHHH-TT-EEEEEEETHHHHHH CS
    Cutinase   1 sckdvevifArgttepgglgsvGeavvsalesavgsksvavqgvnYpAdleq......lyegseeagakeaaalvqslaskCPdtkivlgGYSqGaqvi 93 
                 sc+++++i+Argt+ ++g+  + ++v++  +++ gs+s+ ++   YpA+ ++      +y +s++ag+k++a++v+s++skCPdtk vl+GYSqG++vi
  CCE27279.1  80 SCPEIHIIGARGTGVAPGYDLLLPLVNKLKAKYSGSTSEYLN---YPACGGGaacggvSYGDSAKAGTKAIAQAVSSFNSKCPDTKFVLMGYSQGGHVI 175
                 6*************************************9999...******99********************************************** PP

                 HHHHTT..............S-HHHHHHEEEEEEES-TTCCCCTT................S-TTS-GGGEEEE--TT-GGGTS----GGGG-GGGG.H CS
    Cutinase  94 dnaiegga........tat.lpaavadkvaavvlfGdpsnvaglp................evsklyaskikslCdagDpiCgsgneleaHlsYvseyt 167
                 dna++gg+        ta+ +pa+va+k+ av ++G+p+ + glp                +++++ya+ki+s+Cd gDp+C++g+++++H +Yv++y+
  CCE27279.1 176 DNALCGGVdpnaritdTAAlIPASVAEKIMAVTFMGNPRFQVGLPydagtckasgfdarpqGFTCTYADKIQSYCDIGDPYCCKGKDVAVHGAYVTRYG 274
                 *******9**9999865558******************************************************************************* PP

                 HHHHHHHHHH CS
    Cutinase 168 tqaakFvvsk 177
                 ++a++F+  k
  CCE27279.1 275 DKALQFIEGK 284
                 *******877 PP

>> PE-PPE  PE-PPE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   7.3e-09   4.4e-05       5      66 ..     117     179 ..     113     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 7.3e-09
      PE-PPE   5 aelvsyPasflpvtglksltvdeSvaeGtenLeaairaela..agekvvvfGySqgalvasnek 66 
                  e ++yPa        + +++++S ++Gt+ + +a++++++   + k v +GySqg+ v++n++
  CCE27279.1 117 SEYLNYPACGGG-AACGGVSYGDSAKAGTKAIAQAVSSFNSkcPDTKFVLMGYSQGGHVIDNAL 179
                 566777775555.468999******************9876668999**************986 PP

>> DUF1180  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.7   0.00025       1.5      17      89 ..      17      84 ..       2      97 .. 0.46
   2 ?   -3.0   0.0       1.4   8.3e+03      79      91 ..     141     153 ..     106     168 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00025
     DUF1180 17 asaadasralspaasspeaepPlpp.gataaespgkataieaksaqaaeggngsspragsaadaggslavvpel 89
                 +a+ a +++ pa++      P+ p g+ ++   g+ +  ++ s+ ++ +g+gs +++gs   ++gs++  pe+
  CCE27279.1 17 VHASGACNKAGPAKAL-----PSTPsGSGSGSGSGSGSGSGSGSGSGSGSGSGSGSGSGSG-SGSGSDSSCPEI 84
                2344444444444444.....4444123333223444333333344444444443333333.457777777766 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
     DUF1180  79 aggslavvpelss 91 
                 ++g++a++  +ss
  CCE27279.1 141 KAGTKAIAQAVSS 153
                 3333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2042.65
//
Query:       CCE27280.1  [L=822]
Description: related to metacaspase 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-59  201.7   0.0    2.3e-59  201.3   0.0    1.1  1  Peptidase_C14  Caspase domain
    7.9e-23   80.9   0.0    1.3e-22   80.2   0.0    1.3  1  ADH_zinc_N     Zinc-binding dehydrogenase
    6.8e-18   64.5   0.0    1.3e-17   63.6   0.0    1.5  1  ADH_N_2        N-terminal domain of oxidoreductase
     0.0017   19.4   0.0     0.0047   18.0   0.0    1.8  1  ADH_zinc_N_2   Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3   0.0   5.2e-63   2.3e-59       1     246 [.     529     817 ..     529     819 .. 0.90

  Alignments for each domain:
  == domain 1  score: 201.3 bits;  conditional E-value: 5.2e-63
                    EEEEEEECSTTSSTCC-STTHHHHHHHHHHHHHHHTTEEEEEEEGGEES.......-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEEET..... CS
  Peptidase_C14   1 kkAliIginnYpgtkaeLrGcanDaermaklLvkrlgFevenililtdd.......ptgknirkalkwlvksadhspgDslvvhysGHGtrvpae. 88 
                    +kAl+Igin Y g+k eLrGc+nD+++++++L+++ g++ e+++iltdd       pt++n+++a+ wlvk+a+  p+Dsl++hysGHG+++++  
     CCE27280.1 529 RKALLIGIN-YFGQKGELRGCINDVKNVSNFLITKHGYKREDMVILTDDqpnpvmrPTKDNMLRAMGWLVKDAR--PNDSLFFHYSGHGGQTEDLd 621
                    79*******.997888**********************************************************..**************877778 PP

                    .........EEECTTC...SSEEEHHHHHHTTSTTTHGGGTTS-EEEEEESES.SSBCBEEEEEEES-SSS......................... CS
  Peptidase_C14  89 .........civpvdv...nsliqdddirdlfggdklpslagkpktiiidaCr.gglldkgiekdtsptnk......................... 146
                             +i+pvd+   + +++d++ ++l+  ++l+ ++  ++t+i+d+C+  +++d ++  +t+   k                         
     CCE27280.1 622 gdeddgydeVIYPVDHtqvGHIVDDEIHFRLV--RPLQPGV--RLTAIFDSCHsATAMDLPYVYSTKGVLKepnlakeagqgllnalgsyargdia 713
                    89**************9855555555555555..*******..*******************9999999999999********************* PP

                    ......HCCCHCH.HHHHHCSHHCEEECTTTSEEEEESSSTTBSCEEETTTEE...HHHHHHHHHHHHHTTTSBHHHHHHHHHHHHCCTTTCTTSB CS
  Peptidase_C14 147 ......feedsss.kekkpekqslsklpseadvlllsgcqddqtSadgsengs...aftqalqkvleekggkislkellnkvrkrlkslkkkngyk 232
                          f+  ++  k +++ ++  ++ +s+adv++ sg++d+qtSad++  ++   a+++a++++l+++ + +s+ +lln +r+ l ++    +y+
     CCE27280.1 714 gmastvFGFAKTAfKGDDAYQKTKDTKTSPADVIMWSGSKDNQTSADATIANQatgAMSWAFITALQQNPQ-QSYVQLLNSIRDVL-AS----KYT 803
                    ******55544441666667777788999*************************************55444.6*************.44....5** PP

                    EEEEEEEEESSSBC CS
  Peptidase_C14 233 qrPglssndltkkl 246
                    q+P+ls+++  +++
     CCE27280.1 804 QKPQLSCSHPLDTN 817
                    *******9998876 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   2.8e-26   1.3e-22       1     128 [.     166     306 ..     166     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 2.8e-26
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.. CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakk.lGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.. 96 
                 +vG+++ q+Ak  G +vi+ ++seekl++  k lG d+ +nyk+++++e++k+l  ++g+d+++e vG g+ leaal+ l+  Gr+v +G+ ++ ++  
  CCE27280.1 166 AVGQLVGQIAKKEGLTVIGSVGSEEKLDFITKeLGFDAGFNYKKETPEEALKRLA-PNGIDIYYENVG-GEHLEAALNHLNQFGRIVACGMISQYNKsg 262
                 69**************************99888*********6669*********.9***********.**********************55555557 PP

                 .....EEHHHHHHTT-EEEEE-SSC.......HHHHHHHHHHHH CS
  ADH_zinc_N  97 .....fdlrnlllkeksilGsllgs.......lreefkealdll 128
                       +l+n+++k+++i+G+++++       +re  +++ ++l
  CCE27280.1 263 dsygiPNLMNVIAKQLTIQGFIVANpefgpayYREHQEKLQQWL 306
                 8899778888**************97777664444444466665 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0     3e-21   1.3e-17       2     104 ..       6     113 ..       5     117 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 3e-21
     ADH_N_2   2 qwvlkkrpegaptesdf...eleeeelpelkdGevlvralylSvDPymRgrmnd..aksyvepvelgdvmrggavgeVveSknpdfkvGdlVvgllgwq 95 
                 ++v kk p+g+p + +    e +e +l ++ +G +lv+++y S DPy R  m+d   ksy++ +el+++++  +v++V++S +pdfk+Gd++  ++ ++
  CCE27280.1   6 TLVYKKVPKGFPVAGEHlvvEKREIDLNDVPKGGLLVQVQYASFDPYLRPKMRDpsIKSYAPAFELDEPIVNDTVAKVLKSDSPDFKEGDVIKVFGPIA 104
                 6788999999998866522255667788999**********************85469***************************************** PP

     ADH_N_2  96 dyavsdgkg 104
                 +ya+ ++ +
  CCE27280.1 105 EYATIADPK 113
                 *99876544 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     1e-06    0.0047       1     106 [.     199     315 ..     199     329 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1e-06
                   TT-SEEEETTSTTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----...........S-EEE-CHHHCTTT-EEEE--GGG...- CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe...aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp..........lsaallkpakkrkgrsvkyeflfsmkas 84 
                   lG+d  ++y++e  e   + + ++g+D+ +++vgge+l ea+l++l++ Gr+v  g+ +          +    + + +    ++++++ ++ +++ 
    CCE27280.1 199 LGFDAGFNYKKETPEealKRLAPNGIDIYYENVGGEHL-EAALNHLNQFGRIVACGMISqynksgdsygI----PNLMN-VIAKQLTIQGFIVANPE 289
                   79999999997777769988889*************99.*******888***987742245666533321....22222.22223333333322222 PP

                   ......-HHHHHHHHHHHHHHH----E CS
  ADH_zinc_N_2  85 .....aqadileelaalieeGklrpvv 106
                         +++  e+l +++++G ++   
    CCE27280.1 290 fgpayYREH-QEKLQQWLADGSFKAKM 315
                   666653333.56677777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 6061.94
//
Query:       CCE27281.1  [L=363]
Description: related to homocysteine S-methyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-57  192.9   0.0      1e-56  192.7   0.0    1.0  1  S-methyl_trans  Homocysteine S-methyltransferase


Domain annotation for each model (and alignments):
>> S-methyl_trans  Homocysteine S-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.7   0.0   5.7e-61     1e-56       1     265 [.       6     359 ..       6     362 .. 0.83

  Alignments for each domain:
  == domain 1  score: 192.7 bits;  conditional E-value: 5.7e-61
                     EEB---SHHHHHHT....----STTHHCCHH.H-HHHHHHHHHHHHHHT-SEEE-TTTT--.........GG.....T--HHHHH.HHHHHHHHH CS
  S-methyl_trans   1 lilDGgmgteLerr....adlseelwsaell.trpelikeihrdyleaGadiieTnTyqas.........kik....gleeeeeveelnraavel 77 
                     lilDGg+gt+Le++       s++lws++l+ + p+++ +++ d+ +   di+ T+Tyq+s         +++    g++ ++++ +++++av +
      CCE27281.1   6 LILDGGLGTSLEEKyhikFGPSTPLWSSDLVvSAPHTLLQCQADFGRLPVDILLTATYQVSiegfantceSHAsfpeGID-AANIPQFLERAVCI 99 
                     79*********8777877667788*******77****************************9988887762225666774.79999********* PP

                     HHHHHHHH.........H.........EEEEE--HHHHCTS.....-.--...--HHHHHHHHHHHHH.HH....HHCT-SEEEEEEE--HHHHH CS
  S-methyl_trans  78 areaadeaaa.....plf.........vagsvGpygatlsd.....g.yd..llsfeelveahreqir.al....leagvDlllietipdlleak 145
                     a+ a ++ ++                 va+s+Gpyga++s+     g yd  + s+++l+e+hre+++ ++    l+ +v +l++etip+++e+ 
      CCE27281.1 100 AESATRQQQRqqqpgG-RaasagsvasVALSLGPYGACMSPsqeysGrYDekHDSQDALYEWHRERLAlFAkvdgLSRRVAYLAMETIPRVDEIA 193
                     ****999866666551.0556677777**************988877777645***************6647677999***************** PP

                     HHHHHHT.T.....--EEEEE-ECCT..T.ETTS-BHHH.HHHHHCT-....TEEEEEEES--GGGHHHHHHHH.............HTT--S-. CS
  S-methyl_trans 146 aavellaae.....lpvwisftikdes.t.lrsGetleeavaalaaat....qplavgvNCakpeelepllkel.............ksetalpa 216
                     a++++l ++     + +w+s+ + +++ + l++Ge+++ea++++++++     p++vg+NC++++++  ll+++             +   + pa
      CCE27281.1 194 AMRRALDTVpeladVRFWMSCLY-PGEgEaLPTGESVKEALRTMLDKNlarsLPWGVGINCTNVRKVPVLLQRYeeameemvseglvE---EWPA 284
                     ****999944445566*******.555556****************99999555********************88887777654321...2244 PP

                     EEEE---..S-----------....-............HHHTTEE..............EE---TT--HHHHHHHH CS
  S-methyl_trans 217 vivypns.agevydltpeewaesaee............wleagan..............iiGGCCgttpehIraia 265
                     +++yp++ +gevy+ t+++w+    +            w ++ a               ++GGCC++t e+I++++
      CCE27281.1 285 LVLYPDGtKGEVYNSTTKKWEMPQ-DipdksavqsdvpWEQQLADavratqsrgkwkqiVVGGCCRATSEDIARLR 359
                     88****889************764.36999999999995544444555667778888878**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2652.46
//
Query:       CCE27282.1  [L=250]
Description: related to human corticosteroid 11-beta-dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-43  146.2   0.1    9.7e-43  145.9   0.1    1.1  1  adh_short     short chain dehydrogenase
      1e-30  107.0   0.0    1.2e-30  106.8   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    6.8e-11   42.4   0.1    9.7e-11   41.9   0.1    1.2  1  KR            KR domain
     0.0087   15.5   0.1      0.022   14.3   0.0    1.7  2  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.21   11.4   0.0    1.4  1  DUF494        Protein of unknown function (DUF494)
       0.14   12.4   0.0       0.29   11.4   0.0    1.5  1  TrkA_N        TrkA-N domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.1   3.2e-46   9.7e-43       1     192 [.       4     189 ..       4     192 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.9 bits;  conditional E-value: 3.2e-46
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 kv +vtGas+G+G+aiak l+ e  +v+v++rs+e+le ++        ++ ++++D+td+e  e+++++a   +g+ld Lv N ++  s++f+++s +
  CCE27282.1   4 KVFIVTGASQGLGLAIAKYLIGESHQVIVTARSAEPLEDLKRAHPG---QVDYVTGDMTDAEMPEKVISTALRTFGQLDGLVLNHAMLVSEKFESMSIT 99 
                 789**********************************888888775...6************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                 + + +++vN+++ + +++ ++p+ +++ +G I  vsS a++ ++ g++aY++sKaav++l+ +la e ++  i+ +++ PG vdTdm+k +r+
  CCE27282.1 100 QCKGLYDVNVFSCITMAQRAIPE-IRKTKGCIMWVSSGAARTAYQGWSAYASSKAAVNSLSTCLAFEEKD--ITSITIEPGRVDTDMQKHIRS 189
                 ***********************.89****************************************9877..9***************99875 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.0     4e-34   1.2e-30       1     228 [.      10     239 ..      10     242 .. 0.90

  Alignments for each domain:
  == domain 1  score: 106.8 bits;  conditional E-value: 4e-34
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga +g+G aiAk l  e  +v++t ++ e    +e+l+++++ +v  +  D td e  e++++++ ++fg+lD+lv n ++  +  ++f+++s  + 
    CCE27282.1  10 GASQGLGLAIAKYLIGESHQVIVTARSAEP---LEDLKRAHPGQVdyVTGDMTDAEMPEKVISTALRTFGQLDGLVLNHAMLVS--EKFESMSITQC 101
                   899*************************99...77777777766555*************************************..*********** PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHH.... CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfde.... 187
                   +   dvn+ s++ +a++a+p + k +g i+ +ss +a+ + ++ +ay+ +Kaa+++l+ +lA e  +k i+  ++ pg ++T+++++i++f +    
    CCE27282.1 102 KGLYDVNVFSCITMAQRAIPeIRKTKGCIMWVSSGAARTAYQGWSAYASSKAAVNSLSTCLAFE--EKDITSITIEPGRVDTDMQKHIRSFGKdsmd 196
                   ********************777788************************************88..566*******************995544322 PP

                   ..HHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEE CS
  adh_short_C2 188 ..lleelearaplgrlgtpeevaeaalfLasdeasyitGqtlv 228
                       +++ +    g+l +pe+ +++++ ++ + ++ ++Gq+l 
    CCE27282.1 197 ksQHDNFIQAFEQGQLLKPEQPGHVIARFVAEPNKTMSGQNLK 239
                   22444455566689999***********************986 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   3.2e-14   9.7e-11       2     176 ..       5     175 ..       4     178 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 3.2e-14
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHH.TT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelea.lgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                 ++++tG+  gLGl++a+ l+ +   ++++++Rsa++       ++ l++ +  +v++v  D +d++  e++++++ ++++++ G +    +l  +++e+
  CCE27282.1   5 VFIVTGASQGLGLAIAKYLIGESH-QVIVTARSAEP-------LEDLKRaHPGQVDYVTGDMTDAEMPEKVISTALRTFGQLDGLVLNHAMLVSEKFES 95 
                 579*****************9875.67889999544.......4444441578*******************************999988899999*** PP

                 --HHHHHHHHTTTTHHHHHHHH.HTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE- CS
          KR 100 mtaedleqvlapKvkGawnLhe.lled..esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwg 176
                 m+  +++ ++   v  +  + + ++++  ++   ++ +SS a+ +  +g ++Ya+  a +++l +  + ++   +si ++
  CCE27282.1  96 MSITQCKGLYDVNVFSCITMAQrAIPEirKTKGCIMWVSSGAARTAYQGWSAYASSKAAVNSLSTCLAFEEKDITSITIE 175
                 **************998888761555586777888999*************************99988888888888765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.2e-06     0.022       2      61 ..       7      69 ..       6      93 .. 0.85
   2 ?   -2.3   0.0      0.85   2.5e+03     140     152 ..     146     158 ..     139     175 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.2e-06
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.....elveldltdrsalerlfk 61
                +VtGa+  +G a++k+l  + ++vi+ +r  +  +  ++  +     + v++d+td++  e++++
  CCE27282.1  7 IVTGASQGLGLAIAKYLIGESHQVIVTARSAEPLEDLKR--AhpgqvDYVTGDMTDAEMPEKVIS 69
                7*****************************554444444..45599999******9997777766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.85
                 SHHHHHHHHHHHH CS
   Epimerase 140 spYaaaKlagekl 152
                 s+Ya +K+a+ +l
  CCE27282.1 146 SAYASSKAAVNSL 158
                 7899999998765 PP

>> DUF494  Protein of unknown function (DUF494)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.2e-05      0.21      61     121 ..     182     240 ..     152     241 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.2e-05
      DUF494  61 asssslRiyteeEqekLdaeargfllfLeqagvldaetrElvidramaldeeelsledlkw 121
                 + ++ +R + ++ ++k   +  +f++  eq ++l++e+   vi r +a +++++s ++lkw
  CCE27282.1 182 DMQKHIRSFGKDSMDK--SQHDNFIQAFEQGQLLKPEQPGHVIARFVAEPNKTMSGQNLKW 240
                 5566777777776665..56679*************************************9 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.7e-05      0.29       2      54 ..       7      63 ..       6      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.7e-05
                EEES-SH.HHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTT...SEEEES-TTSHHH CS
      TrkA_N  2 iiiGlGr.vGrslaeeLseggkdvvvidkdeerveelreeg...levvvgdatdeev 54
                i+ G+++ +G ++a++L  ++++v+v  ++ e +e l++     +++v gd td e+
  CCE27282.1  7 IVTGASQgLGLAIAKYLIGESHQVIVTARSAEPLEDLKRAHpgqVDYVTGDMTDAEM 63
                6666655489*********6668***********999888777899********886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1904.66
//
Query:       CCE27283.1  [L=138]
Description: related to TBP-binding repressor protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-16   60.7   0.4    2.4e-16   59.8   0.4    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
    0.00012   22.4   0.2    0.00038   20.8   0.0    1.8  2  Histone        Core histone H2A/H2B/H3/H4


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.4   2.7e-20   2.4e-16       2      65 .]      13      79 ..      12      79 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 2.7e-20
                   XXXHHHHHHHHHCC.TTXS-..B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  2 eLPiarvkkImksd.pdark..iakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   +LP+a+v+kI+ +  p ++   +ak++++l+ ec++efi+ ++seA+ei +ke +Kti+ +hi +A+
     CCE27283.1 13 SLPKATVQKIVGEIlPAQAGltFAKESRDLLIECCVEFITLISSEANEISEKEAKKTIACDHIIKAL 79
                   7*************887776789******************************************97 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   4.2e-08   0.00038      53     128 ..       5      79 ..       2      82 .. 0.94
   2 ?   -1.6   0.0      0.36   3.3e+03      71      81 ..      98     111 ..      95     132 .. 0.52

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.2e-08
                 HHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHH CS
     Histone  53 kyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlAr 128
                 +y  + dl  +k+ ++++v ei +  +++l + +e+ ++l e +  +++ + +eAn ++++  ++Ti   +i  A+
  CCE27283.1   5 EYAGNDDLSLPKATVQKIVGEILP-AQAGLTFAKESRDLLIECCVEFITLISSEANEISEKEAKKTIACDHIIKAL 79 
                 5677899****************9.**********************************************99886 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.36
                 HHHHH....TTSSS CS
     Histone  71 vreivk...seked 81 
                 ++e++k   ++ ++
  CCE27283.1  98 HKEVQKgreKKADK 111
                 45555553222223 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1074.40
//
Query:       CCE27284.1  [L=468]
Description: related to NAD-dependent histone deacetylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-52  176.9   0.0    5.2e-52  176.3   0.0    1.2  1  SIR2      Sir2 family
     0.0045   16.9   0.0      0.012   15.5   0.0    1.7  1  zf-LYAR   LYAR-type C2HC zinc finger


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.3   0.0   5.8e-56   5.2e-52       1     177 []      46     229 ..      46     229 .. 0.98

  Alignments for each domain:
  == domain 1  score: 176.3 bits;  conditional E-value: 5.8e-56
                 -GGGGGGGT---SSS.TTSHHHHSCHHHHSSHHHHHHHHHHHHH..HHHHHHHHHHCCTSS--HHHHHHHHHHHTTCEEEEEES-SSSHHHHTT-S..S CS
        SIR2   1 GAGiStesGipdfRs.keGlyaklakeelaspealfskkllvee..vfyniarellaeeaepnaaHkalkklekkgkllrliTQNiDgLekkaGsk..k 94 
                 GAGiSt++GipdfRs  +G+y++la+ +l + ea+f+++ ++e+  +fy +arel++ ++ p+ +H++l+ l kkg ll+++TQNiD Le++ G+   k
  CCE27284.1  46 GAGISTSAGIPDFRSpGTGIYSHLARLNLPDAEAVFDIDFFRENplPFYCLARELYPGKFYPTVSHAFLALLAKKGVLLKVFTQNIDCLERRVGVPpeK 144
                 9**********************************************************************************************989* PP

                 EEETTEEEEEEEETTTSBEEECCGGHCHHHCCTT.B-T..TTCCBEEEEE--CTSB-SHHHHHHHHHHHH-SEEEEES--STSTT CS
        SIR2  95 vvelHGslakakcvkcekkldkeelqeeieaekvpece..kcgkllkpdvvfFGealpdklkkliekveeadlllviGtSlkVap 177
                 +ve+HGs+a+ +c++c+k++   e++ ++ +++vp c+  +c +++kpd+vfFGea+p+ +++ ++   +ad++lv+GtSl+Vap
  CCE27284.1 145 IVEAHGSFATQRCIDCKKEFPDREMKLHVADATVPYCKdpHCRGIVKPDIVFFGEAMPTLFRDNCQYPATADVILVMGTSLSVAP 229
                 ***********************************996337******************************************98 PP

>> zf-LYAR  LYAR-type C2HC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.3e-06     0.012       3      19 ..     157     173 ..     156     174 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-06
     zf-LYAR   3 CiDCsktFdgdeykaHt 19 
                 CiDC+k+F + e k H+
  CCE27284.1 157 CIDCKKEFPDREMKLHV 173
                 ****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3430.37
//
Query:       CCE27285.1  [L=526]
Description: related to laccase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-42  143.9   5.0      3e-41  140.2   0.2    2.9  2  Cu-oxidase_3  Multicopper oxidase
    5.2e-34  117.7   0.0    5.2e-34  117.7   0.0    2.4  4  Cu-oxidase    Multicopper oxidase
    1.6e-33  115.3   7.7    3.5e-31  107.8   0.8    3.8  3  Cu-oxidase_2  Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   0.2   5.1e-45     3e-41       5     117 ..      19     132 ..      17     134 .. 0.96
   2 !    4.6   0.8    0.0054        32      35      59 ..     397     421 ..     379     490 .. 0.74

  Alignments for each domain:
  == domain 1  score: 140.2 bits;  conditional E-value: 5.1e-45
                   EEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-S...SS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE CS
  Cu-oxidase_3   5 ktvsplggterevitvNgqfpgptievregdtvvvnvtNkl...dentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhs 98 
                   ++++p+g + revi+vNg+fpgp ie+++gdt++v+v+N++   de++s+hwhG+ +++++w DGvp vtqcpi+pg++fty+++++  +gt wYhs
    CCE27285.1  19 GHIAPDGFE-REVILVNGAFPGPLIEANWGDTIQVTVHNNIsttDEGVSLHWHGFLHHDKPWEDGVPAVTQCPIAPGKTFTYSIEAEL-YGTSWYHS 113
                   577888877.*******************************999999*****************************************.******** PP

                   --TTHHHTT-EEEEEEE-H CS
  Cu-oxidase_3  99 hlslqqaaGlaGaiiiedk 117
                   h+s+q+ aGl+G+++i+ +
    CCE27285.1 114 HYSAQYSAGLFGPMVIYGP 132
                   ****************986 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0054
                   -EEEEEEEE-SSS-B-EEEET--S- CS
  Cu-oxidase_3  35 dtvvvnvtNkldentsihwhGlqqr 59 
                   ++v+v++ Nk + +  ih+hG+++ 
    CCE27285.1 397 RSVRVTINNKSPISHPIHLHGFNMY 421
                   67999****************9864 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.4   8.7e+03       8      20 ..     108     120 ..     105     125 .. 0.75
   2 !  117.7   0.0   8.7e-38   5.2e-34       4     157 ..     143     298 ..     140     300 .. 0.93
   3 ?   -2.1   0.0      0.61   3.6e+03      33      52 ..     427     446 ..     400     461 .. 0.71
   4 ?   -3.4   0.2       1.5   9.2e+03       7      19 ..     510     522 ..     509     524 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.4
                 EEETCBCTTSCBC CS
  Cu-oxidase   8 sDwyhkdakelek 20 
                 ++wyh   +++++
  CCE27285.1 108 TSWYHSHYSAQYS 120
                 79***88887766 PP

  == domain 2  score: 117.7 bits;  conditional E-value: 8.7e-38
                 EEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......C.......TTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEE CS
  Cu-oxidase   4 vitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladk.......dgaslatltvepgktyrlriinvsaddslnfsIeGHkltVv 95 
                 +i+lsDwyh d  +l+++ ++++ +    p ++d+ +ingk  ++++  +         +a la++++++g t+rlr+in++ +    fsI+GH++tV+
  CCE27285.1 143 PIMLSDWYHSDYFDLVEQTMKPDSS----PVISDNNMINGKASYDCSRLSPqdrsrctNDAGLAKFRFKRGRTHRLRLINAGSEGLQRFSIDGHTMTVI 237
                 79***************99999998....****************9977735667777889************************************** PP

                 EETCETTSEEEESCEEE-TTEEEEEEEEE-SSSEEEEEEEEGSSSCHHHHTTSEEEEEEEES CS
  Cu-oxidase  96 evDgvyvepvevdsldIavGqrysvlvtanqapgnYwivasgrsnlieafengtaaailrys 157
                 + D+v v+p++++ + ++ Gqr++vlv an   ++Yw++ +++ +l++  +n+ a+a+  y+
  CCE27285.1 238 ANDFVAVQPYNTTVVTLGIGQRTDVLVRANGLLDAYWMRSNIS-QLCSLSNNPSAYAVVYYD 298
                 ****************************************766.669999999999999887 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.61
                 TT--SEEEETTBSS...... CS
  Cu-oxidase  33 ppvpdavlingkggfnatla 52 
                 +++ d ++ing++    +++
  CCE27285.1 427 TGTWDGTIINGHNPQRRDVQ 446
                 45667888888766555544 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 1.5
                 EEEETCBCTTSCB CS
  Cu-oxidase   7 lsDwyhkdakele 19 
                 ++Dw++++  ++ 
  CCE27285.1 510 WGDWTDTNIPDQI 522
                 78****9998865 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   1.4    0.0018        11      33     133 ..      40     129 ..      20     132 .. 0.76
   2 ?    1.9   0.0     0.028   1.6e+02      33     108 ..     202     267 ..     164     282 .. 0.75
   3 !  107.8   0.8   5.9e-35   3.5e-31      24     136 ..     380     490 ..     353     491 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0018
                   EEEEEETTEEEEEEEEE-SSS...-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSE.EEE-TTEEEEEEEES.S-EEEEEEESSHHHHHT CS
  Cu-oxidase_2  33 nvitlpkgevveiviqnntkl...pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdt.vqvppggwvairfkadnpGvwllHCHilwHldq 125
                   + i+++ g++++++++nn ++     ++H+HG+    l++++             e+ v   t   + pg+++++ ++a+  G   +H+H     ++
    CCE27285.1  40 PLIEANWGDTIQVTVHNNISTtdeGVSLHWHGF----LHHDKPW-----------EDGVPAVTqCPIAPGKTFTYSIEAELYGTSWYHSHYSAQYSA 121
                   567778899999999997777555579999998....5333333...........555554432467789999999999999999999999999999 PP

                   T-EEEEEE CS
  Cu-oxidase_2 126 Gmalqfvv 133
                   G+ + +v+
    CCE27285.1 122 GLFGPMVI 129
                   99988875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.028
                   EEEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES. CS
  Cu-oxidase_2  33 nvitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkad 108
                     ++++ g + ++ + n ++   + f ++Gh++ v++++              ++p    +v++  g+++ + ++a+
    CCE27285.1 202 AKFRFKRGRTHRLRLINAGSEgLQRFSIDGHTMTVIANDFVA-----------VQPYNTTVVTLGIGQRTDVLVRAN 267
                   456666688888888887766688888999999999999888...........888888888888888888888875 PP

  == domain 3  score: 107.8 bits;  conditional E-value: 5.9e-35
                   ETCCTTTSSEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES..S-EEEEEEESS CS
  Cu-oxidase_2  24 ngeefsentnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkad.npGvwllHCHi 119
                    +++f+e++nv ++     v+++i+n++++ HP+HlHG+++++l++g+g++   d + +n +np+rrd+ qv+++g+++i+f+a  npGvw lHCHi
    CCE27285.1 380 GNTTFPEEANVRNTGSARSVRVTINNKSPISHPIHLHGFNMYLLHEGTGTW---DGTIINGHNPQRRDVQQVRANGHIVIQFDASsNPGVWPLHCHI 473
                   5669**********************************************5...6668899***********************55*********** PP

                   HHHHHTT-EEEEEEECH CS
  Cu-oxidase_2 120 lwHldqGmalqfvvrpd 136
                    wH+++G+ lqf+++pd
    CCE27285.1 474 VWHASSGFLLQFLTNPD 490
                   **************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3724.08
//
Query:       CCE27286.1  [L=757]
Description: uncharacterized protein CPUR_00758 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-16   60.1   0.1    9.2e-16   58.0   0.1    2.2  1  FHA              FHA domain
    5.6e-05   23.4   0.1    0.00075   19.8   0.1    2.8  2  Yop-YscD_cpl     Inner membrane component of T3SS, cytoplasmi
    0.00046   20.5   2.2     0.0019   18.5   2.2    2.0  1  Phostensin_N     PP1-regulatory protein, Phostensin N-termina
     0.0073   15.9   0.1      0.021   14.4   0.1    1.7  1  YhfZ_C           YhfZ C-terminal domain
  ------ inclusion threshold ------
       0.45   10.9   4.5       0.58   10.6   1.0    2.6  2  DUF3037          Protein of unknown function (DUF3037)
       0.49   10.7  15.4       0.12   12.6   4.0    4.0  3  Mto2_bdg         Micro-tubular organiser Mto1 C-term Mto2-bin
        1.1    8.5   8.5       0.55    9.5   1.0    2.2  2  CorA             CorA-like Mg2+ transporter protein
        1.8    8.9  10.6        7.3    6.9   3.7    2.6  2  XhlA             Haemolysin XhlA
        2.3    7.5  20.9       0.17   11.2   4.4    2.9  3  GAS              Growth-arrest specific micro-tubule binding
        2.6    8.1   9.1        9.7    6.2   0.2    3.4  3  Peptidase_S49_N  Peptidase family S49 N-terminal
        3.5    6.3   5.8       0.74    8.5   0.9    2.0  2  RE_AlwI          AlwI restriction endonuclease
        6.5    6.9  30.8       0.89    9.7   6.0    3.3  3  CENP-Q           CENP-Q, a CENPA-CAD centromere complex subun


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.1   6.2e-19   9.2e-16       2      69 .]     163     240 ..     162     240 .. 0.90

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 6.2e-19
                 EEESS.......TTSSEETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEEST....TSEEEE-TTEEEEET CS
         FHA   2 tiGRs.......sdcdivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigk....gepveLksgdvielG 69 
                 ++GR         +++  +d++++Sr+Ha+i+ + + gk++++D++S+nGtfvNg+r+++    ++p+eL++ d +elG
  CCE27286.1 163 KVGRQtnpktvpTPTNGYFDSKVLSRQHAEIHAERN-GKIFIRDVKSSNGTFVNGSRLSQenreSDPHELQTADHLELG 240
                 688987666666666677889***************.***************************************998 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1     5e-07   0.00075      34      83 ..     184     241 ..     181     245 .. 0.85
   2 ?   -0.4   0.0         1   1.5e+03      40      62 ..     346     368 ..     317     385 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5e-07
                   TTS-TT-EEEEEE.TTEEEEEE-CESS--EETTEE-SECC.......--TTSEEEETT CS
  Yop-YscD_cpl  34 kevsrkhlkLeve.eesvrledlgsrngllvngerveele.......lrpgdvlelGt 83 
                   k +sr+h+++ +e + ++ ++d++s ng++vng r ++ +       l++ d+lelG+
    CCE27286.1 184 KVLSRQHAEIHAErNGKIFIRDVKSSNGTFVNGSRLSQENresdpheLQTADHLELGI 241
                   4579********96778******************99443457788999999999995 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1
                   -EEEEEETTEEEEEE-CESS--E CS
  Yop-YscD_cpl  40 hlkLeveeesvrledlgsrngll 62 
                    l++e+++ +++++dlg +n  +
    CCE27286.1 346 RLTMEMRNARLQAQDLGRTNHFV 368
                   46677777777777777777655 PP

>> Phostensin_N  PP1-regulatory protein, Phostensin N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   2.2   1.3e-06    0.0019      17      76 ..      59     121 ..      54     126 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.3e-06
  Phostensin_N  17 ERrRAKlgllsgeadpvkgaaepsdedErlvLa..eslGPlh.enpFirlErerrrkqarqaq 76 
                    R+R K   lsg++++ +++++ +++  +++La    + P+  +n  +++ ++++++q++q++
    CCE27286.1  59 SRKRSKGPWLSGKQESQSENSKIPHNRPNVILApqSGMQPIAvQNHVMQQQQQQQQQQQQQQH 121
                   69********************99999999997224566996599999999999888888765 PP

>> YhfZ_C  YhfZ C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.4e-05     0.021      61     135 ..     178     257 ..     175     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
      YhfZ_C  61 egrydfavvSrlaAeqaleegkevei.alelGpetYvsahvlllrdge....kseikdglrvgvDsnSlDqkilteaife 135
                 +g +d  v+Sr  Ae ++e + ++ i  ++  ++t+v+  +l  ++ e    + ++ d l +g+D  S+Dqk+++++ ++
  CCE27286.1 178 NGYFDSKVLSRQHAEIHAERNGKIFIrDVKSSNGTFVNGSRLSQENREsdphELQTADHLELGIDIVSEDQKTVVHHKVA 257
                 6789999************999888735899***********9765541111557789***************9987665 PP

>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.72   1.1e+03      35      85 ..     476     509 ..     451     524 .. 0.47
   2 ?   10.6   1.0   0.00039      0.58      22      97 ..     548     625 ..     541     634 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.72
     DUF3037  35 eldeaRlralfpel.....dlealeeelkaleeicegekaagpiakldlaerfrwl 85 
                 + ++aR+r+l + l     + e  e                      dla+r++ +
  CCE27286.1 476 NNQTARMRELEDMLksereAREIAE----------------------DLAKRLEAI 509
                 2233333333333333332222222......................233333322 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00039
     DUF3037  22 lfskkegflkvrlelde....aRlralfpeldlealeeelkaleeicegekaagpiakldlaerfrwltaprstviqtse 97 
                 +  ++eg++++ +++ e    aR+ +l++  ++++++++l++l+ +ce+++ + ++ +++lae++ +l a+    i + +
  CCE27286.1 548 VLDPQEGHVETSINDMEaslqARIDNLDE--QMRTMRDQLQHLKDRCESAELERDESQQSLAEMVVQLRAEEAKRIAAEK 625
                 56788888899888888344455555555..78**************99988999999*********9999888776655 PP

>> Mto2_bdg  Micro-tubular organiser Mto1 C-term Mto2-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   4.0   8.3e-05      0.12       4      22 ..     480     498 ..     478     508 .. 0.88
   2 ?    1.5   0.3      0.25   3.7e+02      26      50 ..     566     590 ..     562     592 .. 0.88
   3 ?    1.9   0.3      0.18   2.7e+02       6      20 ..     606     620 ..     601     626 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.3e-05
    Mto2_bdg   4 eRLreLerqLkaereaRll 22 
                 +R+reLe  Lk+ereaR  
  CCE27286.1 480 ARMRELEDMLKSEREAREI 498
                 6****************75 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.25
    Mto2_bdg  26 garerLeelkaeNrlLkaeLerdrs 50 
                 + ++r+++l+++ r  + +L+ ++ 
  CCE27286.1 566 SLQARIDNLDEQMRTMRDQLQHLKD 590
                 6789****************99886 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.18
    Mto2_bdg   6 LreLerqLkaereaR 20 
                 L e++ qL+ae  +R
  CCE27286.1 606 LAEMVVQLRAEEAKR 620
                 89*********7544 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   1.2      0.04        59     144     219 ..     452     510 ..     434     519 .. 0.49
   2 ?    9.5   1.0   0.00037      0.55     100     160 ..     551     618 ..     538     672 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.04
        CorA 144 stkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkeylrdlldelerllemlealrerleslq 219
                 st++e l +++ql + l k +r l+++++ + r                 l+d+l   + + e +e l++rle + 
  CCE27286.1 452 STRHESLTQIVQLTEALKKSKRDLNNQTARM-RE----------------LEDMLKSEREAREIAEDLAKRLEAIA 510
                 4445555555555555555555555554444.22................33333333334444444444444443 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00037
        CorA 100 deggkpkspgellyrlldeivdrlfellekleeeldeledel......edstkkeilrelaqlr.rrl 160
                 +++g+++++   +++ l++ +d+l+e+++++ ++l+ l d+       +d++++++++ ++qlr +++
  CCE27286.1 551 PQEGHVETSINDMEASLQARIDNLDEQMRTMRDQLQHLKDRCesaeleRDESQQSLAEMVVQLRaEEA 618
                 456888888888999*****************************999888888888888888884223 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.7    0.0049       7.3       3      49 ..     465     514 ..     463     518 .. 0.86
   2 ?    5.6   0.6     0.013        19       9      40 ..     556     591 ..     554     610 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0049
        XhlA   3 kerlerietkldnleervdkle...ekaaeaeekiknleedlkklesnqk 49 
                  e l++ +++l+n   r+ +le   + ++ea+e ++ l ++l+ + + q+
  CCE27286.1 465 TEALKKSKRDLNNQTARMRELEdmlKSEREAREIAEDLAKRLEAIAQDQT 514
                 5789999*********8888883335789****************99886 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.013
        XhlA   9 ietkldnlee....rvdkleekaaeaeekiknleed 40 
                 +et ++++e     r+d l+e +++++ +++ l ++
  CCE27286.1 556 VETSINDMEAslqaRIDNLDEQMRTMRDQLQHLKDR 591
                 788888888888889999999999999888877665 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   1.8       4.4   6.5e+03     114     120 ..     109     115 ..      96     124 .. 0.39
   2 ?    8.6   0.7   0.00071       1.1      77     125 ..     465     513 ..     450     529 .. 0.77
   3 ?   11.2   4.4   0.00011      0.17      89     138 ..     566     615 ..     534     634 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.4
         GAS 114 rfekvek 120
                 + ++ ++
  CCE27286.1 109 QQQQQQQ 115
                 1111111 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00071
         GAS  77 lknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdel 125
                  +  +k k +l+n+ ar++ele+ lk+ ++  e+ e+  +++e+  ++ 
  CCE27286.1 465 TEALKKSKRDLNNQTARMRELEDMLKSEREAREIAEDLAKRLEAIAQDQ 513
                 4556788889999999999999999999999999988888888755554 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00011
         GAS  89 nlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqq 138
                 +l+ar+ +l++++++++ + + l++r+e++e erde +++  +++ +++ 
  CCE27286.1 566 SLQARIDNLDEQMRTMRDQLQHLKDRCESAELERDESQQSLAEMVVQLRA 615
                 689**************************************999877665 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.043        64      67     107 ..     106     148 ..      91     154 .. 0.51
   2 ?    6.2   0.2    0.0065       9.7      36      88 ..     454     506 ..     445     534 .. 0.75
   3 ?    0.6   2.0      0.36   5.3e+02      42      80 ..     570     607 ..     556     648 .. 0.52

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.043
  Peptidase_S49_N  67 lkaaekkekkeekeekkaekkkake.......eeekkrvfvldFkGdi 107
                      ++++++++++++++++ ++              + ++ ++++  +G  
       CCE27286.1 106 MQQQQQQQQQQQQQQHTTR-----GsaggeqpPSVQPVLYLMSLNGTF 148
                      2222222222222222222.....022333457788999999888865 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0065
  Peptidase_S49_N  36 kekgelevtkLneeykelkeeleealldeeelkaaekkekkeekeekkaekkk 88 
                      +++   ++ +L+e +k+ k++l++++ + +el  + k+e++++   +  +k+ 
       CCE27286.1 454 RHESLTQIVQLTEALKKSKRDLNNQTARMRELEDMLKSEREAREIAEDLAKRL 506
                      45556689*****************************9998877666665443 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.36
  Peptidase_S49_N  42 evtkLneeykelkeeleealldeeelkaaekkekkeeke 80 
                      ++ +L+e+ ++++++l++   d+ e  + e++e +++ +
       CCE27286.1 570 RIDNLDEQMRTMRDQLQHLK-DRCESAELERDESQQSLA 607
                      56666666666666665432.222222233332222222 PP

>> RE_AlwI  AlwI restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3       0.3   4.5e+02     220     263 ..     461     504 ..     439     520 .. 0.71
   2 ?    8.5   0.9   0.00049      0.74     182     266 ..     570     659 ..     556     686 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.3
     RE_AlwI 220 leqlnrivsnlskqlnikklneneasklslvkdelkdrlnelik 263
                 ++ql + +++++++ln +     e+ ++  ++ e+++++++l k
  CCE27286.1 461 IVQLTEALKKSKRDLNNQTARMRELEDMLKSEREAREIAEDLAK 504
                 56777778888888888888888888886666666666666655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00049
     RE_AlwI 182 eIekLleeaaiknkddylelmskinkaelplenisnnlleqlnrivsnlskqlnikklneneaskl......slvkdelkdrlnelikiky 266
                  I++L e++ +   d+++ l++ + +ael++++ ++ l e++++++ +  k +  +k+++ e +          ++ +++  ++++++  +
  CCE27286.1 570 RIDNLDEQMRT-MRDQLQHLKDRCESAELERDESQQSLAEMVVQLRAEEAKRIAAEKTQQSEPQSHsissppLQSQTQAQSLFHRRDESNT 659
                 68888888888.5999999***************************************999865443344443445555555555555555 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.26   3.8e+02      90     116 ..     103     127 ..      71     235 .. 0.78
   2 ?    9.7   6.0    0.0006      0.89      26      99 ..     439     515 ..     411     542 .. 0.71
   3 ?    4.6  11.6     0.022        34      32     116 ..     569     654 ..     557     676 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.26
      CENP-Q  90 ehvllqesdseelslleassdevlgea 116
                  hv+ q+++++++++++++++  +g+a
  CCE27286.1 103 NHVMQQQQQQQQQQQQQQHTT--RGSA 127
                 466666444444444444433..3333 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0006
      CENP-Q  26 dfeklldekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakae..are.rkeklkkehvllqesds 99 
                 + ++l ++  +  +    +l ++ +L + ++k +r l + ++ +reLe   k+e  are  ++ +k+++ ++q + +
  CCE27286.1 439 STDRLKSGLVNAGSTRHESLTQIVQLTEALKKSKRDLNNQTARMRELEDMLKSEreAREiAEDLAKRLEAIAQDQTN 515
                 5555555555555666678999**************************98876511566555599998888885544 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.022
      CENP-Q  32 dekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaearerke..klkkehvllqesdseelslleassdevlgea 116
                  ++ +l  q ++++++l+ L+   e +e +  + +++L+e+  + +ae+++r    k +++++  ++ +s++l+ ++++++  +++ 
  CCE27286.1 569 ARIDNLDEQMRTMRDQLQHLKDRCESAELERDESQQSLAEMVVQLRAEEAKRIAaeKTQQSEPQSHSISSPPLQSQTQAQS-LFHRR 654
                 467789999999999999999999999999999999999999999999999544346666666665555555555444444.33332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2332  (0.130069); expected 358.6 (0.02)
Passed bias filter:                      732  (0.0408277); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.53
# Mc/sec: 4309.40
//
Query:       CCE27287.1  [L=290]
Description: uncharacterized protein CPUR_00761 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1028  (0.0573373); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2126.28
//
Query:       CCE27288.1  [L=115]
Description: probable COX16-required for the assembly of cytochrome oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-32  111.4   0.5    4.5e-32  110.4   0.1    1.6  2  COX16       Cytochrome c oxidase assembly protein COX16
  ------ inclusion threshold ------
      0.049   12.6   0.2      0.059   12.3   0.2    1.0  1  ARHGEF5_35  Rho guanine nucleotide exchange factor 5/35


Domain annotation for each model (and alignments):
>> COX16  Cytochrome c oxidase assembly protein COX16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.49   4.4e+03      49      63 ..      14      28 ..       4      29 .. 0.62
   2 !  110.4   0.1     5e-36   4.5e-32       1      79 []      32     109 ..      32     109 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.49
       COX16 49 rkvdleeeyerlqak 63
                +  ++ ++y+rl +k
  CCE27288.1 14 NTGNIASQYRRLLNK 28
                333788888888776 PP

  == domain 2  score: 110.4 bits;  conditional E-value: 5e-36
       COX16   1 llfGlPflllivgGsfgLteftqlryevrdrkvkelskeealelkkkrrkvdleeeyerlqakldlddWenkRvpRpke 79 
                 l+fGlPfl++ivg+sf+Lt++t++rye++drkv++l+++e+l+lk+++r+vd++eey+rlq+  +l+dW++kRv+R+++
  CCE27288.1  32 LFFGLPFLSVIVGASFVLTPATAIRYERHDRKVRRLTRQEELGLKRDARPVDMREEYYRLQGR-ELEDWDQKRVKRLPG 109
                 79************************************************************7.************986 PP

>> ARHGEF5_35  Rho guanine nucleotide exchange factor 5/35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   6.6e-06     0.059     361     399 ..      68     106 ..      59     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.6e-06
  ARHGEF5_35 361 gkqedqglkgkvmsvegqeEevgsgeeepgnwdgdglga 399
                  +qe+ glk+++++v+ +eE    + +e + wd+++ ++
  CCE27288.1  68 TRQEELGLKRDARPVDMREEYYRLQGRELEDWDQKRVKR 106
                 489******************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 849.83
//
Query:       CCE27289.1  [L=200]
Description: uncharacterized protein CPUR_00763 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.048   13.5   0.0      0.091   12.7   0.0    1.4  1  Plectin   Plectin repeat


Domain annotation for each model (and alignments):
>> Plectin  Plectin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.1e-06     0.091      14      37 ..     161     184 ..     160     186 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.1e-06
     Plectin  14 DPvtgerlsveeAvkrGlldeeta 37 
                 DP+t+ rl++  A +r+l+ ee+ 
  CCE27289.1 161 DPLTKNRLPITKAERRKLIKEEIQ 184
                 9********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1377  (0.0768029); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.32s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1351.03
//
Query:       CCE27290.1  [L=264]
Description: uncharacterized protein CPUR_00764 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-54  184.9   0.0    1.3e-54  184.7   0.0    1.1  1  PRP38        PRP38 family
  ------ inclusion threshold ------
        1.6    6.9   3.2        1.9    6.6   3.2    1.1  1  CDC45        CDC45-like protein
          4    8.4   8.9        8.5    7.3   8.9    1.5  1  WRNPLPNID    Putative WW-binding domain and destruction box


Domain annotation for each model (and alignments):
>> PRP38  PRP38 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.7   0.0   2.2e-58   1.3e-54       4     173 ..      27     190 ..      24     191 .. 0.98

  Alignments for each domain:
  == domain 1  score: 184.7 bits;  conditional E-value: 2.2e-58
       PRP38   4 ngqnptlliekivrerIleseYykenlfglkalaelvdeiveklkhieglvlggtekpstflClllKLlqlkptkkqieelln..nedskYiralgllY 100
                 ng np++++ek+vr+rI+es++y e++f++++ a+++d++ve++++++g ++g ++kps+flCl++KLl+l p+++++ e+l    e++kY+ral+ +Y
  CCE27290.1  27 NGLNPATIMEKAVRDRIVESHFYMEQCFAVNE-ADIIDRVVEHVTFVGG-TYGDSQKPSPFLCLAFKLLELGPSDEILAEYLSygGEQFKYLRALASFY 123
                 789*****************************.****************.*********************************9899************ PP

       PRP38 101 lRlvlepkelykllepllnDyrklkrrekdgevdpkgvklitidelvddLltkdricgtiLprlpkrakleee 173
                  R++ ++k++y++lep+l+D+rkl+r+ + g      ++l+++de+vddLl k+r+c+t+L+++pkr  le+ 
  CCE27290.1 124 FRMTRQAKDIYETLEPFLEDRRKLRRKGRAG------TSLTYVDEFVDDLLVKERVCATSLWKMPKREILEDL 190
                 *******************************......9*****************************999875 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.2   0.00033       1.9     138     194 ..     207     261 ..     153     264 .] 0.41

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00033
       CDC45 138 eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee....sddddersrkrrrs 194
                  eee+dd+d +   +ee++e+++e +++ ++++ +             d d+er + r+rs
  CCE27290.1 207 LEEEDDDEDGKGRGDEEDSEREDEGRSNGDGEEGE--V----VngdpMDVDRERGNDRSRS 261
                 22222222222222222222222222222222222..1....0122233333444444433 PP

>> WRNPLPNID  Putative WW-binding domain and destruction box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.9    0.0014       8.5       8      64 ..     178     234 ..     177     240 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0014
   WRNPLPNID   8 FWRnPLPeidleLeeLllldseaeessegesvdedeeaeee...eeeeeeeedeedsgfn 64 
                  W++P  ei ++L eLl ++ ++    e+ +++ed++++++   +  ee+ e e+++  n
  CCE27290.1 178 LWKMPKREILEDL-ELLEPRVSPLGDLEDLLEEEDDDEDGKgrgD--EEDSEREDEGRSN 234
                 5************.7998888766666555555555555554332..2222234444434 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1826.21
//
Query:       CCE27291.1  [L=516]
Description: related to glutamyl-tRNA(Gln) amidotransferase subunit A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-104  349.9   0.0   3.2e-104  349.4   0.0    1.2  1  Amidase   Amidase
  ------ inclusion threshold ------
        0.2   11.8   0.0        7.9    6.7   0.0    2.3  2  DUF2590   Protein of unknown function (DUF2590)


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.4   0.0  3.5e-108  3.2e-104      52     451 .]      71     504 ..      34     504 .. 0.94

  Alignments for each domain:
  == domain 1  score: 349.4 bits;  conditional E-value: 3.5e-108
                 EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE--SGGG-SSSSTT-TT---BBTTCTCC...B--SSSHHHHHHHHTTSSSCE CS
     Amidase  52 PisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkTnmdefamgsstensvfgptrNPwdksr...tpGGSSGGsAAavAaglvpla 147
                  ++vKDni+++++pt ++s +l  ++++++at+v++L++ Ga+++gkTnmdef+mgs + ns+ gp+ N ++++    ++GGSSGGsA+av  g +++a
  CCE27291.1  71 RLAVKDNIATADFPTQCASPILRSHRSPFEATIVSQLRSRGATVVGKTNMDEFGMGSHSTNSMHGPVINHLSTESeplSAGGSSGGSAVAVMLGDADIA 169
                 579*********************************************************************99878899******************* PP

                 EEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHHHHHHHH...HHHBS--TT-TTS----..HHHHHHHHCTT---TT-EEE CS
     Amidase 148 iGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsvedlalll...rvilgedpkdstssvip..eesedlaeelkkslkglriG 241
                 +GtDtGGS+R+PAs++g vG +P+yg +Sr+gv a+++sld+vG+l+++v+ +  ll   +   ++dp+d+ts++    +   ++ +++  + ++l iG
  CCE27291.1 170 LGTDTGGSVRLPASYTGAVGYRPSYGMISRYGVFAYANSLDTVGFLTKEVQPILDLLvrtKLDEEHDPRDPTSLPAAsrRRCAAVCAPELGDMSNLTIG 268
                 **************************************************97655541114446788899999987788666789999999******** PP

                 EEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHHHHHHHHTTT-SSSSS..---SS-SCCCCCCCHHHHCCS-HHHHHHHH CS
     Amidase 242 vvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyylilvaeassnlarylgvry..erlsetkvlsellpksraellgeevkrrie 338
                 ++ e++ a+ldp +++   +a+ aLee+G+++v+v+lps +eal +yy +++aeassnla+y+gvry  +   ++ + ++l++++r  ++g+evkrri 
  CCE27291.1 269 LPLEYNIAELDPLIRQGWIAAATALEEQGARIVPVSLPSTKEALCAYYVLATAEASSNLAKYDGVRYgvRGEHGDAQGHTLYSETRGLGFGPEVKRRIL 367
                 ********************************************************************999999999********************** PP

                 HHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC.............................BSEEEEESSSSS--BCCCCCHHHCSHHHHHGCCTT CS
     Amidase 339 lgnyalsaeasskyylkaqkvrrllrrefakafee.............................lDvllsPtaptpaprlgekdktidsytvlynlldf 408
                 lg+y ls+ea ++y+++aqkvrrl+r++f+++f+                              +D+llsPt+p+ ap+lg+  ++    ++ y  ++f
  CCE27291.1 368 LGTYSLSSEAIDNYFIQAQKVRRLIRQDFDRVFRLqnplckpaqfdlsdmdaettlqdkkgppqVDFLLSPTTPSFAPKLGDVMSE--GSLEAYMGDVF 464
                 **********************************9************************************************885..5999******* PP

                 T...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHHH CS
     Amidase 409 tavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetlL 451
                 t   vp +laglp +svp+    + lP G+q+ig+++++++lL
  CCE27291.1 465 T---VPSSLAGLPCVSVPSRVVGSVLPMGLQLIGQYWDDRRLL 504
                 *...************************************998 PP

>> DUF2590  Protein of unknown function (DUF2590)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0   0.00088       7.9      45      92 ..     275     322 ..     266     328 .. 0.91
   2 ?    2.4   0.0     0.019   1.7e+02      68      91 ..     364     387 ..     358     390 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00088
     DUF2590  45 iaersptlradiltqlellvedDeRlvPGtvkveeeslerlyitAetl 92 
                 iae +p  r+  +   + l e+ +R+vP +   ++e+l  +y++A+  
  CCE27291.1 275 IAELDPLIRQGWIAAATALEEQGARIVPVSLPSTKEALCAYYVLATAE 322
                 899999999**********************************99865 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.019
     DUF2590  68 eRlvPGtvkveeeslerlyitAet 91 
                 +R+  Gt +++ e++++++i A+ 
  CCE27291.1 364 RRILLGTYSLSSEAIDNYFIQAQK 387
                 79*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.33s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3507.16
//
Query:       CCE27292.1  [L=502]
Description: uncharacterized protein CPUR_00766 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.7e-09   35.6   0.0    1.1e-07   31.8   0.0    2.5  2  SIP1         Survival motor neuron (SMN) interacting protein 
  ------ inclusion threshold ------
        2.1    8.3   7.8        4.1    7.4   7.8    1.5  1  TMEM119      TMEM119 family


Domain annotation for each model (and alignments):
>> SIP1  Survival motor neuron (SMN) interacting protein 1 (SIP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   1.3e-11   1.1e-07      13     189 ..      69     305 ..      61     317 .. 0.73
   2 ?   -0.6   0.0       0.1   9.2e+02     203     218 ..     474     489 ..     457     490 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.3e-11
        SIP1  13 pPedgeeYLrrVryEakrcpdVvva.k.........idpsklakkqtvympsipeiakcp................esllP.................. 67 
                  ++d+  YL +Vr++a  +p   va k          dp++  ++++ + + +pei+++p                                       
  CCE27292.1  69 DDSDAMAYLLSVRKQAYDIPHLLVApKvqigpqlpaADPRNDGQEEEDEGQVDPEIEAAPvahtkevmqgyyddgaY---Iampdedwevgaedghvds 164
                 468999*******************6577777766655555555555555556666555544454444444444332...0344666666666666666 PP

        SIP1  68 ...........tkeWeqeqladFselRqkls.....alreelqkkekkqkiklpkikdeek.wkefclgegnePllsillsldqvtveslleyli..ew 147
                             +++ ++ +++++ lR+ l+       +++l++++ ++  ++ + ++  k w +++ +   +P   +l+ ++++tv ++l+ li  ++
  CCE27292.1 165 gaepdarvetlCEAYHKSIMNKYERLRRLLHsprpaGSEKRLSSSQLTHAASFGRHSNTTKvWAKVLRNT--DPHPLQLALMSKETVLQILRVLIggTF 261
                 6666877777678*****************9443322333444444444778888888888799998877..9**99*****************95456 PP

        SIP1 148 leeeeelskelaqWlyallavlek..PLdadtcsalRsllrkca 189
                 l + +++s+ ++qW+++lla+l     L++  + ++R+l r+++
  CCE27292.1 262 LRRGHTVSERTSQWIWGLLARLPDrgELTHTDIGCIRDLGRHAV 305
                 7799******************7633589999999999999876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.1
        SIP1 203 amlnllitiigryFgQ 218
                 a+l++++t++g+++gQ
  CCE27292.1 474 ATLSMILTVAGECYGQ 489
                 4599************ PP

>> TMEM119  TMEM119 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.8   0.00046       4.1     157     227 ..     365     435 ..     323     457 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00046
     TMEM119 157 qnlksParaasasGdgarvvegkseeeekggqevdeeaqgsgvpaekpeveeepcsaeaeaalaagegege 227
                  n +    ++ a+G+g+r+++ ++eeee+g+ e+d e+q ++   e   ++ ++ s   ++  + ++ e+ 
  CCE27292.1 365 ENCQPVNISTDANGEGTRQEQDREEEEEEGEVEEDGEVQEQSLHGEDMAMDLDSGSEDGQVHDEDADLEAA 435
                 555555667899********999****************99999998888655544443333333333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3676.98
//
Query:       CCE27293.1  [L=260]
Description: uncharacterized protein CPUR_00767 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-33  113.9   0.1    2.5e-32  112.4   0.0    1.8  2  RNR_inhib  Ribonucleotide reductase inhibitor


Domain annotation for each model (and alignments):
>> RNR_inhib  Ribonucleotide reductase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.42   7.5e+03      36      42 ..      33      39 ..       9      54 .. 0.49
   2 !  112.4   0.0   1.4e-36   2.5e-32       1     107 []      58     167 ..      58     167 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.42
   RNR_inhib 36 kksksst 42
                +++++++
  CCE27293.1 33 SDNATTS 39
                2222222 PP

  == domain 2  score: 112.4 bits;  conditional E-value: 1.4e-36
   RNR_inhib   1 sLlsVGmRVRKsVpeGYktgsvysafklwsdkstakksksstsssas..aasanrellpfcGinkvgglavqseeeaspat..eeenaavddadaeslp 95 
                 +LlsVGmR+RKsVpeGY+t +  safklw+d+st+++++++++ +++   ++ ++ellpfcGinkvggla+q+   ++ +   ++++++++ +d++++p
  CCE27293.1  58 NLLSVGMRIRKSVPEGYRTSG-PSAFKLWTDNSTTTSNTAAATVPQRsaIRAPTSELLPFCGINKVGGLATQPVFARDMYPdqDDYDSDEQLPDHDAVP 155
                 8********************.9***********99999998888777789999******************9888877766699999*********** PP

   RNR_inhib  96 pltssqesvesn 107
                 +lt sqesv+s+
  CCE27293.1 156 ELTLSQESVDST 167
                 *********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2211.48
//
Query:       CCE27294.1  [L=82]
Description: probable 40S ribosomal protein S27-2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-28   98.2   6.9    1.9e-28   97.9   6.9    1.1  1  Ribosomal_S27e  Ribosomal protein S27
  ------ inclusion threshold ------
        0.2   11.2   2.6       0.28   10.7   2.6    1.2  1  TF_Zn_Ribbon    TFIIB zinc-binding
        1.2    9.2   7.1        2.6    8.1   4.4    2.2  2  zf-C2HC5        Putative zinc finger motif, C2HC5-type


Domain annotation for each model (and alignments):
>> Ribosomal_S27e  Ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   6.9   3.2e-32   1.9e-28       1      55 []      28      82 .]      28      82 .] 0.99

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 3.2e-32
                    -S--EEEEE-TTTS-EEEEESS-SS-EEESSSTCEEEEECSSSEEESSCEEEEES CS
  Ribosomal_S27e  1 prskFldvkCpdCenetvvFshaatvvkCisCgkvLvePtGGkaklkaqilerlk 55
                    prs+F+dvkCp+C+++t+vFsha+tvv C+ C +vL++PtGGka+l++++++r+k
      CCE27294.1 28 PRSFFMDVKCPGCFAITTVFSHAQTVVICQGCTTVLCQPTGGKARLTEGCSFRRK 82
                    89***************************************************97 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.6   4.7e-05      0.28       2      29 ..      36      63 ..      35      66 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.7e-05
                  EETTTTCEECHEETSTTCEEESSSSBEE CS
  TF_Zn_Ribbon  2 kCPnCgstnlveDpergelvCtdCGlVl 29
                  kCP C   ++v+ ++++ ++C  C++Vl
    CCE27294.1 36 KCPGCFAITTVFSHAQTVVICQGCTTVL 63
                  9******889****************97 PP

>> zf-C2HC5  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.051     3e+02       7      18 ..      15      26 ..      13      29 .. 0.86
   2 ?    8.1   4.4   0.00044       2.6       4      39 ..      40      79 ..      37      81 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.051
    zf-C2HC5  7 qatrHpLleaap 18
                +a++H+L +++p
  CCE27294.1 15 EAKKHKLKTLVP 26
                599****99988 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00044
    zf-C2HC5  4 CnCqatrHpLleaapnClnCGkiiCakegls....kpCsf 39
                C+   t    ++++ +C  C  ++C+  g +    + Csf
  CCE27294.1 40 CFAITTVFSHAQTVVICQGCTTVLCQPTGGKarltEGCSF 79
                555555555677899***********99887666677877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 603.08
//
Query:       CCE27295.1  [L=262]
Description: related to phosducin homolog, likely to be involved in regulation of pheromone response [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-15   54.9   0.0    8.2e-15   54.5   0.0    1.2  1  Phosducin  Phosducin


Domain annotation for each model (and alignments):
>> Phosducin  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   4.6e-19   8.2e-15      95     261 ..      71     233 ..      52     237 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 4.6e-19
                 T----HHHHHHHHHHHHHHHHHHH-------SEEE--SHHHHHHHHHSS-TT-EEEEEEE-TTSTTHHHHHHHHHHHHH.H-TTSEEEEEEHHHH--TT CS
   Phosducin  95 kdkddeeflrkyrkqrmdemrqklskgprfkfvlelesgeqfldtidkeqkitlivvhiyedgvkgtealnssliclaa.eyptvkfckvkasvigasd 192
                  d++deefl +yrk+rm e+   l+k   ++ v+ +   +   ++ d  qk  + v      g +    + s l   aa ey  +kfc ++as+  a +
  CCE27295.1  71 EDLEDEEFLDQYRKRRMAELS-SLQKKAVHGTVYPISKPDYQREVTDASQKGPVFVNLTAGTGTNVESRVLSELWRQAArEYGEIKFCEIRASQ--AIE 166
                 489****************96.6999999***********************99998888899888777777777665549***********97..789 PP

                 SS-TTT-SEEEEEETTEEEEEETTGGGGS-TT--HHHHHHHHHTTT-S---XXXXXXXXXX.......X CS
   Phosducin 193 rfsrdvlpallvykagellsnfvrvtdqlaedffavdleaflqefgllpekevlvlesvrnsatchsed 261
                  +     p++lvy  g+++ + v++    +       l+ +l e g +pe ++ v+++ +   +  +ed
  CCE27295.1 167 NYPDRNCPTILVYNKGDIVKQEVTLMTLGGVRTNMRHLDNLLVEVGAVPESDMRVVKRRQA--AEDAED 233
                 999999*******************9999999999********************987655..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1989.11
//
Query:       CCE27296.1  [L=495]
Description: uncharacterized protein CPUR_00770 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-13   47.8   8.3    1.1e-07   31.5   1.3    2.9  4  LRR_8     Leucine rich repeat
    1.8e-07   31.3   0.4    1.8e-07   31.3   0.4    2.7  3  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.46   11.2   6.4          3    8.7   0.4    3.9  4  LRR_1     Leucine Rich Repeat
       0.73   10.1   2.3         43    4.5   0.1    3.2  3  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.5   6.9e+03       5      22 ..     172     189 ..     171     193 .. 0.61
   2 !   31.5   1.3   2.5e-11   1.1e-07       6      61 .]     215     268 ..     213     268 .. 0.94
   3 !   28.5   0.9   2.1e-10   9.3e-07       2      56 ..     234     283 ..     233     285 .. 0.85
   4 ?   -1.5   0.0       0.5   2.2e+03      14      29 ..     401     416 ..     384     418 .. 0.54

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.5
                 EEE-TTS--SEE-TTSST CS
       LRR_8   5 sLdLsnNrltslddeaFk 22 
                 ++dL++  l++l+ e+ +
  CCE27296.1 172 TIDLWSMGLEELSNETLS 189
                 566777777777666655 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 2.5e-11
                 EE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   6 LdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 L L  Nrl  ++   F  l++L+ L+L+ N+l+ + p a+  Lp+L+ L++s+NrL
  CCE27296.1 215 LFLAMNRLRLVPGALFD-LQHLTGLSLRGNKLSEI-PPAIGKLPNLKRLNVSQNRL 268
                 88999999999999998.*****************.9*****************98 PP

  == domain 3  score: 28.5 bits;  conditional E-value: 2.1e-10
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 +Lt L+L+ N+l+++++   k l+nLk L+ s+N+l+tl     + L +L  L L
  CCE27296.1 234 HLTGLSLRGNKLSEIPPAIGK-LPNLKRLNVSQNRLRTLP----AELVQLFDLSL 283
                 8999**************999.*****************5....44555555555 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.5
                 SEE-TTSSTT-TT--E CS
       LRR_8  14 tslddeaFkglsnLkv 29 
                 + l+    +gls+L+ 
  CCE27296.1 401 SQLSHYIPEGLSHLRD 416
                 3444444445555544 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.4   4.1e-11   1.8e-07       1      39 [.     233     271 ..     233     275 .. 0.88
   2 ?   -1.1   0.1      0.65   2.9e+03      24      36 ..     282     294 ..     267     306 .. 0.62
   3 ?   -2.7   0.0       2.1   9.5e+03      16      28 ..     403     417 ..     384     419 .. 0.53

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 4.1e-11
                 SS--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   1 pnLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39 
                 ++L+ L+L++N+l++ip+ ++klpnLk L++s+N ++++l
  CCE27296.1 233 QHLTGLSLRGNKLSEIPPaIGKLPNLKRLNVSQN-RLRTL 271
                 589***************7778*********999.77666 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.65
                 T--EEE-.-S--- CS
       LRR_4  24 nLkeLdLsgNnli 36 
                 +L+ L+++ N+++
  CCE27296.1 282 SLRNLWVHPNPFL 294
                 3555555335555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.1
                 -S-..HHH-TT--EE CS
       LRR_4  16 ipl..leklpnLkeL 28 
                 ++   +e+l +L+ L
  CCE27296.1 403 LSHyiPEGLSHLRDL 417
                 333434467777766 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.037   1.7e+02       2      22 ..     235     254 ..     232     255 .. 0.71
   2 ?    8.7   0.4   0.00067         3       1      18 [.     257     274 ..     257     293 .. 0.80
   3 ?   -2.4   0.0       3.2   1.4e+04       4      12 ..     301     309 ..     301     326 .. 0.61
   4 ?   -2.0   0.0       2.3     1e+04       2      15 ..     386     399 ..     385     414 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.037
       LRR_1   2 LrhLdLsnnpllglppnsfqn 22 
                 L+ L L++n l + +p+++ +
  CCE27296.1 235 LTGLSLRGNKL-SEIPPAIGK 254
                 45569******.677777766 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00067
       LRR_1   1 nLrhLdLsnnpllglppn 18 
                 nL++L++s+n+l  lp++
  CCE27296.1 257 NLKRLNVSQNRLRTLPAE 274
                 8***********555543 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.2
       LRR_1   4 hLdLsnnpl 12 
                 +LdLs+  +
  CCE27296.1 301 SLDLSDEDN 309
                 589976655 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2.3
       LRR_1   2 LrhLdLsnnpllgl 15 
                 L +L L+++  +  
  CCE27296.1 386 LVELALRSCYSTKE 399
                 66777888887332 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.017        77       3      15 ..     233     245 ..     231     246 .. 0.89
   2 ?    4.5   0.1    0.0096        43       3      15 ..     256     268 ..     254     270 .. 0.86
   3 ?   -2.9   0.0       2.3     1e+04       4      13 ..     385     394 ..     384     394 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.017
       LRR_6   3 thLteLdLsgNdI 15 
                 +hLt L+L+gN++
  CCE27296.1 233 QHLTGLSLRGNKL 245
                 8**********98 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0096
       LRR_6   3 thLteLdLsgNdI 15 
                 ++L+ L++s N +
  CCE27296.1 256 PNLKRLNVSQNRL 268
                 89*********87 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.3
       LRR_6   4 hLteLdLsgN 13 
                 +L eL L+++
  CCE27296.1 385 SLVELALRSC 394
                 8999*99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3712.14
//
Query:       CCE27297.1  [L=127]
Description: uncharacterized protein CPUR_00771 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0088   15.8   1.3       0.01   15.6   1.3    1.1  1  PRP3      pre-mRNA processing factor 3 (PRP3)
  ------ inclusion threshold ------
      0.026   15.1   1.0      0.052   14.2   1.0    1.5  1  SlyX      SlyX
       0.32   11.1   4.7        1.1    9.4   4.0    2.2  2  DUF1192   Protein of unknown function (DUF1192)
       0.38   11.8   5.5       0.59   11.2   5.5    1.2  1  Spt5_N    Spt5 transcription elongation factor, acidic N-term


Domain annotation for each model (and alignments):
>> PRP3  pre-mRNA processing factor 3 (PRP3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.3   2.2e-06      0.01      10      83 ..       8      96 ..       2     124 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.2e-06
        PRP3 10 akvkkrkkralkfvekGkfikqaeql..........rekaqleelkkeiaeeakkaglesdlklaekapkk.eedevpndvEW....WD 83
                +++ k++k +++f+e+G  ++   ++          r++a+l ++ ++++++++ ++  ++++l +++ ++ +++++p+ + W    +D
  CCE27297.1  8 SEKPKESKANMHFNEQGDLVADDGNErstsfqqeldRQQAELAKMTAKLEAAQEITAKLEAAHLDNSKSRQgSSSKTPDIYNWmpdsFD 96
                455678899***********998888455555555555555555555555555555444444444333333677788844455444455 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.0   1.2e-05     0.052      24      56 ..      33      65 ..      25      75 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
                HHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXX CS
        SlyX 24 dvvaeqqqqidrlqrqlrllaerlkeleessga 56
                +  +  qq++dr+q++l++++ +l++++e +++
  CCE27297.1 33 ERSTSFQQELDRQQAELAKMTAKLEAAQEITAK 65
                556778******************999998765 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.0   0.00023       1.1      15      54 ..      21      60 ..       3      62 .. 0.72
   2 ?   -1.7   0.0      0.69   3.1e+03      34      44 ..     103     113 ..      98     117 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00023
     DUF1192 15 qDLslLSveELeerIalLeaEIaRleaaiakkkasraAAe 54
                 +  +L  ++ +er + +++E +R +a++ak +a+ +AA+
  CCE27297.1 21 NEQGDLVADDGNERSTSFQQELDRQQAELAKMTAKLEAAQ 60
                444567777779999************************7 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.69
     DUF1192  34 aEIaRleaaia 44 
                  EI R+ a + 
  CCE27297.1 103 NEIRRCLADLN 113
                 68988877665 PP

>> Spt5_N  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   5.5   0.00013      0.59       9      84 ..       4      80 ..       2      89 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
                XXXXXX..XXXXXXXXXXXX.XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXX CS
      Spt5_N  9 dddeee..eeeeeeveggeddfiaeeeaeeeeed.serddrshreldrrrqaeed.....edaeeiaealeeRYgrsskkayrg 84
                ddde+e  +e+  ++ + e+ +++ +       d +er  + ++eldr++ + ++     e a+ei ++le  + ++sk+++ +
  CCE27297.1  4 DDDESEkpKESKANMHFNEQGDLVAD-------DgNERSTSFQQELDRQQAELAKmtaklEAAQEITAKLEAAHLDNSKSRQGS 80
                33333322222222222222222222.......124555556666666664444322224777777777777777766655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1817  (0.101344); expected 358.6 (0.02)
Passed bias filter:                      862  (0.0480785); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 993.68
//
Query:       CCE27298.1  [L=173]
Description: uncharacterized protein CPUR_00772 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1405.70
//
Query:       CCE27299.1  [L=57]
Description: uncharacterized protein CPUR_00773 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 422.17
//
Query:       CCE27300.1  [L=343]
Description: uncharacterized protein CPUR_00774 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-31  109.3   1.8    4.3e-31  108.7   1.8    1.3  1  DUF3632   Protein of unknown function (DUF3632)


Domain annotation for each model (and alignments):
>> DUF3632  Protein of unknown function (DUF3632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   1.8   2.4e-35   4.3e-31       1     174 [.      66     253 ..      66     254 .. 0.93

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 2.4e-35
     DUF3632   1 WelllevAkqipa...aqdkLvellkalrk......deeeegaktedgerlWsdlpllgaalreedeadskereeekeewinlnaFlArltaagvlkd. 89 
                 W+ ++++A   pa   + d+Lv l+ ++r+      +ee+e+a  ++g+rlW+dlp+l+++l   ++++s  ++ +++++ +l+aF+ +l+a gv++  
  CCE27300.1  66 WDEFIHAALLQPAdsaELDRLVTLILEVRElgglskQEEQEAAVMSNGQRLWTDLPFLAEDLYAFWSKES--DALTAAQRASLAAFTGKLCAVGVCAPa 162
                 9***********************************889999**********************999976..9999********************77* PP

     DUF3632  90 .slyalwalreaLEseeeeeeaekeekldadlaaAaqWillageeLyelseeekdkdekdee...gnagapgpl........wkgfskeRWafWker 174
                  + +alw+++ a+E      ++ ++e++++ l+a+ +W+++ +  L++l+++++ ++ + +    g+  +pgpl        ++gfs +RW +W++r
  CCE27300.1 163 lARCALWLFKRAFE------TEISAETMAEMLPACREWFFYGNTTLVKLCRDNHGSGASGDGdgdGALETPGPLvtdaetkqRRGFSIARWLLWRRR 253
                 **************......4467789*************************9997776666777777788888999*****99***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.47
# Mc/sec: 2205.85
//
Query:       CCE27301.1  [L=499]
Description: related to IVY1-phospholipid-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-05   22.3   3.9     0.0036   16.7   0.5    2.1  2  IMD       IRSp53/MIM homology domain
  ------ inclusion threshold ------
      0.054   13.0   0.4       0.15   11.6   0.0    1.8  2  Arfaptin  Arfaptin-like domain


Domain annotation for each model (and alignments):
>> IMD  IRSp53/MIM homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.2   0.00045         4      10      43 ..      66      99 ..      58     107 .. 0.85
   2 !   16.7   0.5     4e-07    0.0036      57     140 ..     147     230 ..     129     282 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00045
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         IMD 10 PaledfvskakklekalrtlvlaaeayldAlqKi 43
                 a+ d+v+ ak ++ al+tl+ aa+ +  Al   
  CCE27301.1 66 RAYADLVASAKTYRLALATLSQAASQFGAALEAC 99
                5789**********************98888755 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 4e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHCCCS-CHH CS
         IMD  57 GsvLvrmaerhRsieskLeelvkalhdsLlnpleekveedkkvlnqldkdyakEykkkraelkKkssellklqkKakkgkddlk 140
                  + L+  + +h  i ++ + l++++  s   pl + +++++ v+++ +  y+   k +  e+k+ + e lkl+k++++     +
  CCE27301.1 147 ADTLLSASGVHHLIANHQQILSETVYRSFEVPLLHDLDKWQTVIDDEEETYQAKIKAQSREVKRMEKEGLKLHKQRRRDVARFR 230
                 4678888999****************************************************************9998444444 PP

>> Arfaptin  Arfaptin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.7e-05      0.15      42      82 ..      61     101 ..      53     123 .. 0.88
   2 ?   -1.7   0.1       0.2   1.8e+03      84     113 ..     192     221 ..     186     233 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Arfaptin  42 lreiketykelvklaknlskallklsqtekelGdvfkdlsk 82 
                 l+  ++ y +lv+ ak++  al  lsq+  ++G +++  + 
  CCE27301.1  61 LEASQRAYADLVASAKTYRLALATLSQAASQFGAALEACAR 101
                 78899*******************************98876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.2
                 .H-CCGHHHHHHHHHHHHHHHHHHHHHHHH CS
    Arfaptin  84 ekqealgeaftatgealrllakqgeallka 113
                 + +e+ +++++a ++ ++ ++k+g++l k+
  CCE27301.1 192 DEEETYQAKIKAQSREVKRMEKEGLKLHKQ 221
                 667788888889999999999988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1046  (0.0583412); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3437.33
//
Query:       CCE27302.1  [L=428]
Description: uncharacterized protein CPUR_00776 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.8   1.3       0.31   11.3   1.3    1.7  1  RGCC      Response gene to complement 32 protein family


Domain annotation for each model (and alignments):
>> RGCC  Response gene to complement 32 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.3   1.7e-05      0.31      80     124 ..     293     336 ..     275     339 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.7e-05
        RGCC  80 dslnrsslsfsdekLnsptasspslssplvvsrkakLGDtkeLed 124
                 d ++ +s  +s   L s t +++s ss+++++  + LGD+ ++ed
  CCE27302.1 293 DLSPPNSSRTSSQTLESATLTTTS-SSSATMTATPELGDAADVED 336
                 667788999999********9999.888999999*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3218.63
//
Query:       CCE27303.1  [L=412]
Description: related to RNA-3`-phosphate cyclase 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-46  156.6   0.0    9.1e-46  155.8   0.0    1.4  1  RTC       RNA 3'-terminal phosphate cyclase
  ------ inclusion threshold ------
       0.13   12.6   0.0       0.25   11.7   0.0    1.4  1  DinI      DinI-like family


Domain annotation for each model (and alignments):
>> RTC  RNA 3'-terminal phosphate cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8   0.0     1e-49   9.1e-46       2     192 ..      13     348 ..      12     398 .. 0.87

  Alignments for each domain:
  == domain 1  score: 155.8 bits;  conditional E-value: 1e-49
                 TTTSTHHHHHHHHHHHHH---EEEESTTTTSSS...-S--HHHHHHHHHHHHHHT-EEE--STT-SEEEEE--....----SEEEEEEES.SEBHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx.xxxxxxxx RF
         RTC   2 gegGgqiLRtalaLsaltgkpvrIenIRanRkk...PGLraqhltavrllakitnaevegaeigsteleFkPg....eikageyevdigt.AGsitlll 92 
                 gegGgq++R a+aL+alt ++v+I+++R nR     +GL+aqh+t + +lak+t+a+v+g +igs+ ++F P+    ++++++++++ +t A s  l+l
  CCE27303.1  13 GEGGGQLVRVACALAALTCQSVTIHHVRGNRGGdrgGGLKAQHVTSLAWLAKVTDAQVQGLDIGSKIVTFWPRrppaNLSPRSFKIEPETdASSALLVL 111
                 8******************************98999*************************************55444567899999876477999*** PP

                 HHHHHHHTTSS....S-EEEEEEEBSBBTTS--HHHHHHTHHHHHHH.HT.-EEEEEEEE--BT..TTB-EEEEEEEE-.-S---EB............ CS
                 xxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx............ RF
         RTC  93 qtllplllfak....kpseltlkGgTnvsaapsvdylktvllpllkr.fgvlelelelkkrGfy..pkGgGevelevepskklkpie............ 172
                 q+++p +lfa     +p+el++ GgTnvs++ s++y+++vl+p+l++ fg + ++ elk rG++  p+  G++ l v+p +k ++++            
  CCE27303.1 112 QAIFPYVLFAGnannEPLELDIYGGTNVSWSLSYEYFDQVLMPVLEErFG-ICVRRELKARGWSmgPRSRGHIALVVQPIRKGESLKfvpwpshsypss 209
                 **********9777778****************************9879*.6999999999986558999*******9987644444556********* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
         RTC 173 ................................................................................................... 172
                                                                                                                    
  CCE27303.1 210 yrvsridisiivpqsahevvqaelvrslaelypgsetqvklvedsghnsrwsillvahsqdgvrwgrdtlfsmpkpeklkstwqefaqsacarlckklh 308
                 *************************************************************************************************** PP

                 ......BSS-HHHHHHHHHHHHHHT............... CS
                 ......xxxxxxxxxxxxxxxxxxx..............x RF
         RTC 173 ......acvDehlqdqlilfmaLak..............g 192
                       ++vDe+lqdqli +++La+              +
  CCE27303.1 309 aetsqaSAVDEFLQDQLIALQVLAEgvstfprggpwrseE 348
                 *************************555555555555550 PP

>> DinI  DinI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.8e-05      0.25       1      31 [.     222     252 ..     222     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.8e-05
                 -TTHHHHHHHHHHHHHHHH-SS-EEEEEEES CS
        DinI   1 pagaiealeaELskRiqevfPdaevrvrkas 31 
                 p++a e  +aEL + + e++P +e +v+  +
  CCE27303.1 222 PQSAHEVVQAELVRSLAELYPGSETQVKLVE 252
                 899*******************999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2968.94
//
Query:       CCE27304.1  [L=742]
Description: uncharacterized protein CPUR_00778 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-49  167.4   0.0    4.1e-49  166.7   0.0    1.3  1  Thioredox_DsbH  Protein of unknown function, DUF255
     0.0022   18.1   0.0     0.0041   17.3   0.0    1.5  1  Thioredoxin_7   Thioredoxin-like


Domain annotation for each model (and alignments):
>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7   0.0   4.5e-53   4.1e-49      10     162 ..      39     202 ..      35     203 .. 0.94

  Alignments for each domain:
  == domain 1  score: 166.7 bits;  conditional E-value: 4.5e-53
  Thioredox_DsbH  10 pYllqhaknpvdWypwgeealekakeedkpillsiGysachWChvmekesfedeevaallnesfvsvkvDreerPdldkiymeavqaltgsggWP 104
                     +++++  ++ v W+p++ e++e a++e+k+++l+iG+ ac++C+ m  e+f d+e+aa+lnesfv+v+vDr+erPd++++ym++++a+++ ggWP
      CCE27304.1  39 SFVQSAETSYVVWQPLTPETIEWARQENKLLFLHIGFGACNYCRLMLYETFMDKECAAVLNESFVPVIVDRDERPDIEAVYMNYLSAVSSAGGWP 133
                     6888899999************************************************************************************* PP

  Thioredox_DsbH 105 lnvfltpdlkpffggtYfpkeeregr...........pgflevlekiaelweeereeleeeaeelleal 162
                     lnvf+tpd +p+fggtY+p    ++r            + l+v ++++++w++++ ++++ea+e+l++l
      CCE27304.1 134 LNVFVTPDMEPVFGGTYWPGPGVSRRvgagaetekeaLDSLAVFKRVRDIWQDQEAKCRAEASEILSKL 202
                     *******************98777667778888877788999***********************9998 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.6e-07    0.0041       2      67 ..      51     115 ..      50     140 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.6e-07
                    --SSHHHHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG CS
  Thioredoxin_7   2 wlsdldealakaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdani 67 
                    w+   +e  + a++++k +++ +g   c +C+ +  ++  d+e +a+l+e fv + vd +er + i
     CCE27304.1  51 WQPLTPETIEWARQENKLLFLHIGFGACNYCRLMLYETFMDKECAAVLNESFVPVIVDRDERPD-I 115
                    56666788899**********************96555556688899************99987.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5273.35
//
Query:       CCE27305.1  [L=448]
Description: uncharacterized protein CPUR_00779 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3295.06
//
Query:       CCE27306.1  [L=182]
Description: probable U-snRNP-associated cyclophilin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-49  166.1   0.1    8.1e-49  165.9   0.1    1.0  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
  ------ inclusion threshold ------
      0.045   13.8   0.0       0.07   13.2   0.0    1.3  1  Thioredoxin_3  Thioredoxin domain


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.9   0.1   9.1e-53   8.1e-49       2     157 ..      16     180 ..      15     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 165.9 bits;  conditional E-value: 9.1e-53
  Pro_isomerase   2 vdietss..kGrivieLfadkaPktvenFlklvkeg..........fYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEitsklk 85 
                    +d++ ++  +Gri++eLf   +Pkt+enF++++ +g           Y+g++FhR+i+ fm+qgGd+ +++ +g+++  g    +a++dE+ ++lk
     CCE27306.1  16 FDMTLGGepLGRITFELFLSIVPKTAENFRQFC-TGeskdaqgspqGYKGSKFHRIIPSFMCQGGDFLKGDGTGSTCIWGL---KAFEDEN-FTLK 106
                    6777766779***********************.556888888999*********************99977666553333...59*****.8999 PP

  Pro_isomerase  86 h.krGalamartgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetde...erpkknvkivsae 157
                    h ++G+l+ma++g  pns+gsqFfIt+ ++p+ldgk++vFGkVv+Gmdvv+k+e+++t     + p+ +v+i++++
     CCE27306.1 107 HdQPGLLSMANAG--PNSNGSQFFITTVPTPFLDGKHVVFGKVVDGMDVVRKMEATKTGYkgkDIPNMDVVIAQCG 180
                    9999*******98..8***************************************999888888999999999997 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   7.9e-06      0.07      40      72 ..     122     154 ..      97     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.9e-06
                    HHHHHCT-SSSSEEECTTCEEEESS---CCHHH CS
  Thioredoxin_3  40 eeiekygVmsvPalvidgkvvvsGkvpseeeir 72 
                    ++ +++ +++vP+ ++dgk vv Gkv ++ ++ 
     CCE27306.1 122 SNGSQFFITTVPTPFLDGKHVVFGKVVDGMDVV 154
                    555677899*****************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1291.45
//
Query:       CCE27307.1  [L=436]
Description: uncharacterized protein CPUR_00781 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-12   45.7   6.1    1.1e-11   44.9   6.1    1.4  1  zf-RING_2     Ring finger domain
    2.4e-08   33.7   5.7    4.1e-08   32.9   5.7    1.4  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    6.2e-08   32.2   1.0    1.1e-07   31.5   1.0    1.4  1  zf-RING_11    RING-like zinc finger
    1.8e-07   30.9   3.4    3.1e-07   30.2   3.4    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    1.3e-06   28.6   8.1    4.6e-06   26.8   8.1    1.9  1  zf-rbx1       RING-H2 zinc finger domain
    6.2e-06   26.1   3.2      1e-05   25.4   3.2    1.4  1  zf-RING_5     zinc-RING finger domain
     0.0042   16.9   2.5     0.0072   16.2   2.5    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0047   16.9   0.6     0.0047   16.9   0.6    2.4  2  zf-RING_UBOX  RING-type zinc-finger
     0.0053   16.8   5.2      0.019   15.0   5.2    1.8  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
  ------ inclusion threshold ------
      0.014   15.2   5.9      0.031   14.1   5.9    1.6  1  zf-RING_4     RING/Ubox like zinc-binding domain
      0.051   14.2   0.1       0.26   11.9   0.0    2.0  2  HNF-1_N       Hepatocyte nuclear factor 1 (HNF-1), N terminus
       0.11   13.1   0.1       0.49   11.0   0.0    2.0  2  OAD_gamma     Oxaloacetate decarboxylase, gamma chain
       0.13   12.2   4.4       0.29   11.0   4.4    1.6  1  Prok-RING_4   Prokaryotic RING finger family 4
       0.17   12.1   4.9       0.31   11.3   0.9    2.5  2  FANCL_C       FANCL C-terminal domain
       0.28   10.8   4.5       0.56    9.9   4.5    1.4  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
        0.3   11.0   5.8       0.62   10.0   5.8    1.6  1  PHD           PHD-finger
       0.54   10.5   4.3        1.3    9.3   4.3    1.7  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
        9.9    6.2   9.5       0.28   11.2   1.7    2.1  2  Prok-RING_1   Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   6.1   1.1e-14   1.1e-11       1      44 []     265     309 ..     265     309 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.1e-14
   zf-RING_2   1 deCpICleelssadsvlllpCgHvfhreClerwlrssst.CPlCr 44 
                 d+C+IC + l+++d+v+ l CgH fh  C++ wl+s++  CPlC+
  CCE27307.1 265 DSCAICIDTLEDDDDVRGLACGHAFHAVCVDPWLTSRRAcCPLCK 309
                 58***************999**************99999*****7 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   5.7   4.2e-11   4.1e-08       2      40 .]     267     308 ..     266     308 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 4.2e-11
  zf-C3HC4_2   2 CpiCldmlkdpsvvt..pCgHvfCqkCilrsLeekn.eCPlC 40 
                 C+iC+d l+d  +v   +CgH f++ C++++L++    CPlC
  CCE27307.1 267 CAICIDTLEDDDDVRglACGHAFHAVCVDPWLTSRRaCCPLC 308
                 **********9999888*****************9999**** PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   1.0   1.1e-10   1.1e-07       2      29 .]     267     294 ..     266     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.1e-10
  zf-RING_11   2 CsICLeefkpgqalfilpCsHtFHfkCI 29 
                 C+IC++++++++ ++ l C+H+FH  C+
  CCE27307.1 267 CAICIDTLEDDDDVRGLACGHAFHAVCV 294
                 ***************************7 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   3.4   3.1e-10   3.1e-07       1      41 []     267     308 ..     267     308 .. 0.96

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 3.1e-10
                 -TTT-S--SS-E...E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iC +++++ +  + l C+H+f+  C++ +l  ++  +CPlC
  CCE27307.1 267 CAICIDTLEDDDdvRGLACGHAFHAVCVDPWLT-SRRACCPLC 308
                 **********999999*****************.88899**** PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   8.1   4.6e-09   4.6e-06      14      55 .]     267     309 ..     259     309 .. 0.69

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 4.6e-09
     zf-rbx1  14 cieckapgdeecpvvlG.eCgHaFHlhCiskWlkt.rkvCPlcr 55 
                 c  c  + +++   v G +CgHaFH  C++ Wl++ r+ CPlc+
  CCE27307.1 267 CAICIDTLEDDDD-VRGlACGHAFHAVCVDPWLTSrRACCPLCK 309
                 4445444444222.33338***************956669***6 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   3.2     1e-08     1e-05       2      43 ..     267     309 ..     266     310 .. 0.96

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1e-08
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll.ekeavCpiCr 43 
                 C +C + l++++++  ++CgH f+  C++  l  ++a+Cp+C+
  CCE27307.1 267 CAICIDTLEDDDDVRGLACGHAFHAVCVDPWLtSRRACCPLCK 309
                 ******************************9999********8 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.5   7.2e-06    0.0072       4      46 ..     266     311 ..     264     314 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.2e-06
                 B-TTTSSS...BS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B CS
  zf-C3HC4_3   4 eCviCler...prnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrp 46 
                  C iC ++   + +v  l CgH  +   C++ +l  r++ Cp+C+++
  CCE27307.1 266 SCAICIDTledDDDVRGLACGHA-FHAVCVDPWLTsRRACCPLCKAD 311
                 7*****96555888*********.99******9989********986 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.6   4.7e-06    0.0047       1      35 [.     267     301 ..     267     304 .. 0.74
   2 ?    0.3   2.2      0.72   7.2e+02       1      13 [.     305     316 ..     305     323 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.7e-06
  zf-RING_UBOX   1 CpIClelftdP..lv.lpCGHtFCreCl..welskslega 35 
                   C IC ++++d   +  l CGH F+  C+  w     l  +
    CCE27307.1 267 CAICIDTLEDDddVRgLACGHAFHAVCVdpW-----LTSR 301
                   ********9444557778**********444.....4443 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.72
  zf-RING_UBOX   1 CpIClelftdPlv 13 
                   Cp C+ ++ +P +
    CCE27307.1 305 CPLCKADYFTP-K 316
                   *****555555.3 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   5.2   1.9e-05     0.019      36      81 ..     257     312 ..     252     316 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
                 TTC.STTTTTS-EEE..........BT.TS-EEEHHHHHHHHHHHSTSSB-TTTSSB- CS
  zf-ANAPC11  36 psc.kfpGddcplvl..........Gk.ckhnfhlhcilkwletetskglcpmcrqtf 81 
                 p+c   pGd c++ +          G  c h+fh+ c+  wl ++  +  cp+c+  +
  CCE27307.1 257 PEClAAPGDSCAICIdtleddddvrGLaCGHAFHAVCVDPWLTSR--RACCPLCKADY 312
                 5563357777777442222222222667**************865..679****9876 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   5.9   3.1e-05     0.031       1      47 [.     267     312 ..     267     313 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
   zf-RING_4   1 cplCdeeldetdkdlkpCeCgyqiClfCyhrileeeegrCPaCreeY 47 
                 c +C++ l e+d+d++   Cg+ +   C +  l++  ++CP C+ +Y
  CCE27307.1 267 CAICIDTL-EDDDDVRGLACGHAFHAVCVDPWLTSRRACCPLCKADY 312
                 899**999.556778888999999999999999999*********99 PP

>> HNF-1_N  Hepatocyte nuclear factor 1 (HNF-1), N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00026      0.26      62     148 ..      24     138 ..       6     145 .. 0.75
   2 ?   -0.9   0.0       2.1   2.1e+03      85      95 ..     209     219 ..     159     268 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00026
     HNF-1_N  62 gkssknasssttksklsqtqrledessspgns...ydtspil..........................sasqrsfsfekaeeledldieeaaeqrakve 131
                 ++++++ +sst+++ l++t+++++ +s++ n+    ++sp+l                          +a +r+   +++ e+  l++   + +r++ +
  CCE27307.1  24 TETQSSGASSTSSPPLTGTNKNDGGNSNNNNNnnqGSSSPLLffvalgfgvvftnlwiivgvkycfryNARNRARMTNENGEPITLETVY-RPRRRREK 121
                 344445556666799999996665555554331114455555************************988999999999999977776544.77889999 PP

     HNF-1_N 132 ellredswrvkeeikaf 148
                 +l+ +d+ ++k  +k++
  CCE27307.1 122 KLMTMDEVNAKFPMKKY 138
                 ***********988888 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.1
     HNF-1_N  85 dessspgnsyd 95 
                 ++ ++p +++d
  CCE27307.1 209 QAVPRPNERTD 219
                 22222222211 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0005      0.49       8      39 ..      69     100 ..      65     116 .. 0.83
   2 ?   -1.4   0.1       3.6   3.6e+03      57      59 ..     218     245 ..     195     255 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0005
   OAD_gamma   8 llGmgvVFvvLilLslvislfskiikkkakkk 39 
                  lG+gvVF+ L +++ v ++f++ ++  a   
  CCE27307.1  69 ALGFGVVFTNLWIIVGVKYCFRYNARNRARMT 100
                 69*******************99877766655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
   OAD_gamma  57 a.........................el 59 
                 +                         ++
  CCE27307.1 218 TdristnhevrpaslrrtscddddddDD 245
                 1345555666666677777776554333 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.4   0.00029      0.29       1      38 [.     267     310 ..     263     314 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00029
  Prok-RING_4   1 CvlCgeq...ekkailepCgHlvCkeCfdskdls...sCPlCqr 38 
                  C +C      + +++   CgH +   C d +  s    CPlC+ 
   CCE27307.1 267 CAICIDTledDDDVRGLACGHAFHAVCVDPWLTSrraCCPLCKA 310
                  556654444477788889****9999999997776779****85 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.9   0.00031      0.31       4      45 ..     266     302 ..     264     304 .. 0.79
   2 ?    1.9   0.4      0.25   2.5e+02       4      27 ..     304     327 ..     301     331 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00031
                 S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHH CS
     FANCL_C   4 eCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrslk 45 
                 +C iC     d++ v         C++ fH++C+  Wl s +
  CCE27307.1 266 SCAICIDTLEDDDDVRGL-----ACGHAFHAVCVDPWLTSRR 302
                 688888888777777665.....57899**********9865 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.25
                 S-SSS--SS-TT-----B--S-TT CS
     FANCL_C   4 eCgiCyayrldsgevpdisCdnek 27 
                  C++C a  +    +p++ Cd ++
  CCE27307.1 304 CCPLCKADYFTPKPRPNQECDAQS 327
                 5999*9999999999999999765 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.5   0.00056      0.56       6      46 ..     266     306 ..     262     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00056
  Zn_ribbon_17   6 sCayCelavkgr.vvlcgvCeHvlHasCarewfenddlaeCp 46 
                   sCa+C  +++    v   +C+H  Ha C++ w++    a Cp
    CCE27307.1 266 SCAICIDTLEDDdDVRGLACGHAFHAVCVDPWLTSRR-ACCP 306
                   6777766665431456789**************9998.7776 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.8   0.00062      0.62       2      51 ..     267     310 ..     266     311 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00062
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 Ca+C + + e+++ v    C+++fH  C++p l+s++      +C+ Ck 
  CCE27307.1 267 CAICID-TLEDDDDVRGLACGHAFHAVCVDPWLTSRRA-----CCPLCKA 310
                 99***9.888889999999*************995544.....8999985 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.3    0.0013       1.3       1      42 []     267     308 ..     267     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
  zf-C3HC4_4   1 CPiCldYLekP...vsleCGhsfClsCisslqkepdgeqllCplC 42 
                 C iC d Le+      l+CGh f   C++ +  +  +    CplC
  CCE27307.1 267 CAICIDTLEDDddvRGLACGHAFHAVCVDPWLTSRRA---CCPLC 308
                 999999999762214589*************999976...6**99 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.7   0.00028      0.28       4      35 ..     264     294 ..     262     297 .. 0.89
   2 ?   -1.4   1.2       2.4   2.4e+03      23      30 ..     305     312 ..     302     328 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
  Prok-RING_1   4 gkkCpvCgkelkeedDiVvCpeCgtpyHraCy 35 
                  g++C +C ++l+++dD V   +Cg  +H  C 
   CCE27307.1 264 GDSCAICIDTLEDDDD-VRGLACGHAFHAVCV 294
                  689*********9988.68899******9995 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.4
  Prok-RING_1  23 CpeCgtpy 30 
                  Cp C++ y
   CCE27307.1 305 CPLCKADY 312
                  88888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3202.21
//
Query:       CCE27308.1  [L=345]
Description: uncharacterized protein CPUR_00782 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-40  137.8  10.8    4.1e-40  137.8  10.8    1.7  2  DUF3752   Protein of unknown function (DUF3752)
  ------ inclusion threshold ------
       0.44   11.3   5.4       0.75   10.5   5.4    1.4  1  GRP       Glycine rich protein family


Domain annotation for each model (and alignments):
>> DUF3752  Protein of unknown function (DUF3752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         1   9.1e+03      17      29 ..      13      25 ..       8      45 .. 0.47
   2 !  137.8  10.8   4.5e-44   4.1e-40       1     152 []     170     340 ..     170     340 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1
     DUF3752 17 knrkFatgkaaka 29
                ++rk +  + a+a
  CCE27308.1 13 TKRKRSPDQDAAA 25
                3333333322222 PP

  == domain 2  score: 137.8 bits;  conditional E-value: 4.5e-44
     DUF3752   1 PPessdlssrvdptklknrkFatg...kaakaa..agdsslWteTPeekakrladevlgrkekaaaaaaake.......akekkreeeetaekvkeyne 87 
                 PP s+++s+r dpt++++rkFa++   ++a  +   +  s+WteTP+ek +r++d+ lgr+ +a++aaa  +       ++++k ++++++e++++ +e
  CCE27308.1 170 PPPSTAYSER-DPTRMRARKFASKplsSSAG-KpsPDHPSIWTETPQEKLQRQKDALLGRTPSASHAAAGGGtssssssSERAKMQKRQQEERIAASIE 266
                 8999999999.*************8753333.3579999*************************99999999999*999777777789*********** PP

     DUF3752  88 kkRg.ksLveehqekkkkkkkk........eeeeddpskraFDrekDmalgrriskaqrkellkkaadfgsRFs 152
                 ++Rg ksL+ eh+e++k++           +ee+ddpskraFDrekDma+g++i +++r el++++a+fg+RF+
  CCE27308.1 267 ASRGkKSLYAEHDERRKEGGGGgngrgekeAEEDDDPSKRAFDREKDMAIGGKIGSRARTELISRSANFGGRFQ 340
                 ***989************987799*****99******************************************7 PP

>> GRP  Glycine rich protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.4   8.4e-05      0.75      22      78 ..     243     297 ..     233     338 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.4e-05
         GRP  22 evaaaelskeeksekeeevkdekyggggkhggGgygggggggngGGGykgggGgygg 78 
                   ++ e +k++k+++ee +    +    +++++ y  +   +++GGG+ +g+G+ + 
  CCE27308.1 243 SSSSSERAKMQKRQQEERIAASIE--ASRGKKSLYAEHDERRKEGGGGGNGRGEKEA 297
                 444445567888888888877755..4566889*******************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       914  (0.0509789); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 2707.28
//
Query:       CCE27309.1  [L=360]
Description: uncharacterized protein CPUR_00783 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-18   66.3   0.0    4.7e-18   65.5   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   2.6e-22   4.7e-18      13     159 ..     128     290 ..     116     304 .. 0.78

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 2.6e-22
  Methyltransf_16  13 tgesigrkvWdaavvlvkylekklake........lganelsklsvlELGsGtGlvGlavaellpeakviltDleellellkknielnknalks 98 
                      tg+s g k W ++ vl+ +l +  a +        + +   ++ +v+ELGsGtGl G+a+a+l  +a+v l+Dl++++++lk+n e n+ ++++
       CCE27309.1 128 TGDSLGFKTWGSSFVLARHLPRLRATSlstlfdksSASGLPTPPTVVELGSGTGLLGMAAAAL-WGAHVSLSDLPNIVDNLKSNAERNRGLIQQ 220
                      5779****************9987776888976543333446789****************99.99*********************9986655 PP

  Methyltransf_16  99 k...vkvevLdWg...eeleedllek.eevDlilaaDcvYledslelLvkvLkellkkesk..vlvaykk 159
                      +    +v  L+Wg   ee+ ++l+ + +++ ++l+aD +Y+ d   lL++ +++ l+ + +   +v + +
       CCE27309.1 221 RgggLSVGSLTWGgskEEVDQELFGRhHQFKIVLVADPMYDDDHPALLASAISQQLALDAEsrAVVMVPQ 290
                      43339*******844456677777651679*******************999876554433334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2681.63
//
Query:       CCE27310.1  [L=256]
Description: uncharacterized protein CPUR_00784 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.6   0.4      0.032   14.7   0.4    1.4  1  Tai4      Type VI secretion system (T6SS), amidase immunity p


Domain annotation for each model (and alignments):
>> Tai4  Type VI secretion system (T6SS), amidase immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.4   1.8e-06     0.032       6      67 ..     191     252 ..     188     256 .] 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHH-.--HHHHHHHHHHHHHHHHH--S-HH.HHHHHHHHHHHHHT-......--- CS
        Tai4   6 lvlarClakaykkdkavkkDagasasallewtsydleaateeikelvdkylkrdytnplkes 67 
                 ++ arC+a a k+ k+vk      a+a+ + +++++e+  ++ ++l  + ++++++++++ +
  CCE27310.1 191 YIWARCIAYAMKHHKSVKARTIHDAAAWTDHSTVQVENFFTNLESLHAQSTQKRQRSDTAGA 252
                 5789******************************************9999999777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2082.66
//
Query:       CCE27311.1  [L=1580]
Description: related to VPS8-vacuolar sorting protein, 134 kD [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-76  254.9   0.3    4.8e-75  251.4   0.0    2.7  3  Vps8          Golgi CORVET complex core vacuolar protein 8
    4.4e-05   23.4   0.7      0.062   13.2   0.0    3.9  5  Clathrin      Region in Clathrin and VPS
     0.0014   18.6   0.0     0.0041   17.1   0.0    1.8  1  zf-RING_UBOX  RING-type zinc-finger
     0.0032   17.4   2.2     0.0041   17.0   0.0    2.2  2  zf-RING_5     zinc-RING finger domain
      0.007   16.7   0.1      0.027   14.8   0.1    2.0  1  zf-RING_2     Ring finger domain
  ------ inclusion threshold ------
      0.051   13.9   0.0       0.17   12.2   0.0    1.9  1  zf-rbx1       RING-H2 zinc finger domain
      0.061   13.1   0.1      0.061   13.1   0.1    2.1  2  zf-RING_11    RING-like zinc finger
       0.07   13.0   0.4        0.3   11.0   0.4    2.1  1  PHD           PHD-finger
      0.074   12.9   0.5       0.25   11.2   0.1    2.1  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
        0.2   11.5   0.6       0.49   10.3   0.0    1.9  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> Vps8  Golgi CORVET complex core vacuolar protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.4   0.0   2.7e-78   4.8e-75       1     198 []     713     915 ..     713     915 .. 0.96
   2 ?   -1.6   0.0      0.89   1.6e+03     163     184 ..    1122    1148 ..    1069    1150 .. 0.66
   3 ?   -0.5   0.0      0.41   7.3e+02      35      74 ..    1177    1216 ..    1163    1234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 251.4 bits;  conditional E-value: 2.7e-78
        Vps8   1 vFlevLepyilsgklkslppevvkalvehysskgelerleelilhldpksLDldqvlklckehrLydaliYvwnkaldDYvtPlvellklirsa...e. 95 
                 +Fle+Lep+il+++++++pp vvk+lv+hy+s+g+ +rlee+i+h+ +++LDldq++ lck+h+Lydal+Yvwn+al+DY+tP++++l+l+  +   + 
  CCE27311.1 713 LFLETLEPCILDETITTIPPLVVKDLVNHYVSQGWESRLEEMICHMQTATLDLDQITLLCKQHGLYDALTYVWNQALHDYITPMIDMLSLLVPLiadDg 811
                 5******************************************************************************************99876524 PP

        Vps8  96 eeeeekeeeeeeeeeaykvfeYlsyiLtGraYPsgeeleeeeaskakseiyslLfsgksiewpkgsgk.lltkeeseeepafPylrlLLkfdaeeflsv 193
                  ++  ++e++  + +a k+f+YlsyiLtGraYP+ge ++e++a++ak+e+y+++fsgk+iewpk+sgk + t++++++epafPylr++Lkfda++fls+
  CCE27311.1 812 VKAGGSTEDDYFSVNALKIFPYLSYILTGRAYPNGEWMDENTATQAKAEVYWFFFSGKTIEWPKNSGKeFITQPNDDSEPAFPYLRMILKFDAPSFLSA 910
                 556677888889999****************************************************88****************************** PP

        Vps8 194 LneaF 198
                 LneaF
  CCE27311.1 911 LNEAF 915
                 ****9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.89
        Vps8  163 k.....lltkeeseeepafPylrlLLk 184 
                  +     + ++ +++ e ++ yl++LL+
  CCE27311.1 1122 TtvhelIVESATDDPELQYAYLKALLE 1148
                  134456677778889999*******97 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.41
        Vps8   35 elerleelilhldpksLDldqvlklckehrLydaliYvwn 74  
                  + +r+++ + ++ p+ L l++ l  ++e +  da + +++
  CCE27311.1 1177 DASRVTTFVSNMQPTDLRLEKLLPTMEETGVVDAAVVLMT 1216
                  578999*************************999887765 PP

>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       6.5   1.2e+04      16      38 ..     389     411 ..     380     417 .. 0.74
   2 ?    5.1   0.0     0.011        19      59      95 ..     749     787 ..     732     806 .. 0.79
   3 ?   -0.5   0.0      0.58     1e+03       4      55 ..    1023    1079 ..    1020    1101 .. 0.72
   4 !   13.2   0.0   3.4e-05     0.062      23     115 ..    1136    1238 ..    1124    1248 .. 0.80
   5 ?   -2.9   0.0       3.1   5.6e+03     123     137 ..    1305    1319 ..    1303    1324 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 6.5
                 HHHCTT-HHHHCHHHCCHHHCHT CS
    Clathrin  16 lfeeaglleelleyLekvlkeds 38 
                 +  + gl+ +l++yL  ++++++
  CCE27311.1 389 ATDTMGLTAMLTPYLLVIVSTTP 411
                 566789999******99997664 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.011
                 HHHHHTTS..S---..S-TTHHHHHHHT-SSHHHHHHHHHT CS
    Clathrin  59 qeleeflk..knnn..ydlekvaklcekadlyeeavilykk 95 
                 ++lee++   +  +   dl+++  lc++++ly+ + ++++ 
  CCE27311.1 749 SRLEEMIChmQ--TatLDLDQITLLCKQHGLYDALTYVWNQ 787
                 56777777433..3359********************9976 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.58
                  CCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS.....--HHHHHHHHHHHHHT CS
    Clathrin    4 ltdpidlsrvvklfeeaglleelleyLekvlkedsk.....enpalqtallelyaky 55  
                  + +p++++++v lf++a +++ l  + ++  + ++      e+p+ q+a+ e+ a+ 
  CCE27311.1 1023 VYQPLEMQSLVPLFQKARFYRILRRVFREEHQYGRLvatyfEDPDDQEAVFECVADC 1079
                  5678999**********9999999888776655544555556666666666666666 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 3.4e-05
                  HHHHCHHHCCHH.......HCHTS....--HHHHHHHHHHHHHTT-HHHHHHTTS..S---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSS.X CS
    Clathrin   23 leelleyLekvl.......kedsk....enpalqtallelyakyddpqeleeflk..knnnydlekvaklcekadlyeeavilykkinefkkais.l 105 
                  +e+ + yL+++l       +        + + l +++++l++k d  +++ +f++  + +   lek++   e+++ ++ av+l ++ +++++a++ l
  CCE27311.1 1136 PELQYAYLKALLepkgandE---SghqdDRQGLIERYVQLMCKFDA-SRVTTFVSnmQPTDLRLEKLLPTMEETGVVDAAVVLMTRDGQVNEAMDrL 1228
                  56667777777755444331...14557889999***********5.********766666*********************************976 PP

                  SSSSHCSCHH CS
    Clathrin  106 lkklkdfdda 115 
                  l++l +++ a
  CCE27311.1 1229 LRHLFSLESA 1238
                  8887666655 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 3.1
                  XXSHHHHHHHHHHHS CS
    Clathrin  123 snpelwekllealld 137 
                   ++ lw kl++ +++
  CCE27311.1 1305 TDESLWLKLIDTCVQ 1319
                  6899********997 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.3e-06    0.0041      11      39 .]    1538    1577 ..    1530    1577 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.3e-06
  zf-RING_UBOX   11 P...lv.lpCGHtFCreCl.....w..elskslegafkCP 39  
                    P   lv l C H+++++Cl     +  +   ++e+++kCP
    CCE27311.1 1538 PlgaLVvLACRHVYHQSCLdalqeKqeNHVTGREREYKCP 1577
                    555544369**********9986516899**********9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.5       1.6     3e+03      29      43 ..     677     689 ..     674     690 .. 0.69
   2 !   17.0   0.0   2.3e-06    0.0041      15      41 ..    1542    1578 ..    1532    1580 .] 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.6
   zf-RING_5  29 lkkllekeavCpiCr 43 
                 l++l   e +C +Cr
  CCE27311.1 677 LRELA--ETCCAACR 689
                 55555..78898998 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2.3e-06
   zf-RING_5   15 fyltsCgHifCekClkkll..........ekeavCpi 41  
                   ++++C H+++++Cl+ l+          e+e++Cpi
  CCE27311.1 1542 LVVLACRHVYHQSCLDALQekqenhvtgrEREYKCPI 1578
                  789********************************98 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.5e-05     0.027      17      42 ..    1543    1578 ..    1532    1579 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
   zf-RING_2   17 lllpCgHvfhreClerwlrssst...........CPl 42  
                  ++l C+Hv+h++Cl+ + +++++           CP+
  CCE27311.1 1543 VVLACRHVYHQSCLDAL-QEKQEnhvtgrereykCPI 1578
                  5668**********884.4444336677777888886 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.4e-05      0.17      27      53 ..    1542    1578 ..    1522    1580 .] 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.4e-05
     zf-rbx1   27 vvlGeCgHaFHlhCiskWlkt..........rkvCPl 53  
                  +v+ +C+H++H+ C++   ++          + +CP+
  CCE27311.1 1542 LVVLACRHVYHQSCLDALQEKqenhvtgrerEYKCPI 1578
                  44559**********9988876666666655555666 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.4       1.5   2.7e+03      21      27 ..     539     545 ..     539     545 .. 0.82
   2 ?   13.1   0.1   3.4e-05     0.061      14      29 .]    1541    1556 ..    1536    1556 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
  zf-RING_11  21 sHtFHfk 27 
                 +H+FH +
  CCE27311.1 539 KHIFHTD 545
                 6****75 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.4e-05
  zf-RING_11   14 alfilpCsHtFHfkCI 29  
                  al++l C H++H+ C+
  CCE27311.1 1541 ALVVLACRHVYHQSCL 1556
                  7899***********5 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   0.00017       0.3      20      47 ..    1546    1577 ..    1542    1578 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
                  TTSCEEETTTSSSTHSHHSHHSS....TBSST CS
         PHD   20 gCkrwfHqkClkppleseekpeg....ewlCe 47  
                   C++ +Hq+Cl+  +e++e++ +    e+ C+
  CCE27311.1 1546 ACRHVYHQSCLDALQEKQENHVTgrerEYKCP 1577
                  5***********99998888777799999997 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       3.1   5.6e+03      22      31 ..    1454    1463 ..    1453    1465 .. 0.82
   2 ?   11.2   0.1   0.00014      0.25      13      35 ..    1542    1563 ..    1539    1565 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.1
  zf-C3HC4_2   22 fCqkCilrsL 31  
                  +C+ C +r +
  CCE27311.1 1454 TCEACSRRVW 1463
                  8****99976 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00014
  zf-C3HC4_2   13 svvtpCgHvfCqkCilrsLeekn 35  
                  +vv +C Hv++q+C++  L+ek+
  CCE27311.1 1542 LVVLACRHVYHQSCLDA-LQEKQ 1563
                  67889*********998.67665 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       3.3     6e+03      21      30 ..    1454    1463 ..    1453    1464 .. 0.80
   2 ?   10.3   0.0   0.00027      0.49      14      39 ..    1544    1577 ..    1530    1578 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.3
                  B-CHHHHHHH CS
    zf-C3HC4   21 fCskCirkil 30  
                   C++C r+++
  CCE27311.1 1454 TCEACSRRVW 1463
                  5999999876 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00027
                  E-TTS--B-CHHHHHHHHC........TSSB--T CS
    zf-C3HC4   14 lleCkHsfCskCirkilks........rkkvkCP 39  
                  +l C+H ++++C++ ++++        ++++kCP
  CCE27311.1 1544 VLACRHVYHQSCLDALQEKqenhvtgrEREYKCP 1577
                  689***************9988888877777798 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 10001.14
//
Query:       CCE27312.1  [L=260]
Description: related to pigp_human [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-53  177.4   0.3    1.1e-52  177.0   0.3    1.2  1  PIG-P            PIG-P
  ------ inclusion threshold ------
      0.032   13.9   0.1      0.045   13.4   0.1    1.2  1  Wzy_C            O-Antigen ligase
      0.049   13.9  10.4      0.087   13.1  10.4    1.3  1  DPM2             Dolichol phosphate-mannose biosynthesis regu
       0.54   10.3   1.7       0.73    9.9   1.7    1.1  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
       0.69   10.5   4.8       0.94   10.1   3.5    1.8  2  Rab5ip           Rab5-interacting protein (Rab5ip)


Domain annotation for each model (and alignments):
>> PIG-P  PIG-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.0   0.3   3.2e-56   1.1e-52       1     121 []      89     227 ..      89     227 .. 0.91

  Alignments for each domain:
  == domain 1  score: 177.0 bits;  conditional E-value: 3.2e-56
       PIG-P   1 treyygFvlyllstlafllyllwallPeevlhalgityypnryWalavpayllmlvlyiyvalaslnlevltppldsletivDeaakv........... 88 
                 t+eyygFvlyl+s+l+fl+y+lw++lP+++lhalgi+yypnr+Wala+pa+++ml++yiyvala++n+e+lt+p+ s+etivD a k            
  CCE27312.1  89 TYEYYGFVLYLFSSLTFLMYVLWSYLPSPFLHALGIYYYPNRWWALAIPAFIVMLLCYIYVALAAYNTEILTVPMRSVETIVDGAGKPavidskgrlrg 187
                 79************************************************************************************4445555555566 PP

       PIG-P  89 .......eeeeeeeelkeyaseetdavmDlpigeVnevlY 121
                         ++    +++e+++e+tdavmD+p+g+V+evlY
  CCE27312.1 188 sgnrerkRDSGGRLRWREVWNEGTDAVMDIPLGGVCEVLY 227
                 666666566678899************************9 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.3e-05     0.045      28     109 ..     121     223 ..      95     242 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
       Wzy_C  28 vlliifykrripfllllgilvgvilliilfv...............lstnletlknitkafgkldkk...................kgkdksgssRl.y 91 
                 +l i +y +r+ ++l + ++++++l++i+++               +         i+        +                   +++d  g  R+ +
  CCE27312.1 121 ALGIYYYPNRW-WALAIPAFIVMLLCYIYVAlaaynteiltvpmrsV-------ETIVDG------AgkpavidskgrlrgsgnreRKRDSGGRLRWrE 205
                 34556666666.56666688888888888887776666644444441.......333222......133444466666777777546666666666634 PP

       Wzy_C  92 iwkralplikdspilGtG 109
                 +w+++ +++ d p+ G+ 
  CCE27312.1 206 VWNEGTDAVMDIPLGGVC 223
                 5************99986 PP

>> DPM2  Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  10.4   2.4e-05     0.087       6      60 ..      94     147 ..      91     156 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.4e-05
        DPM2   6 GlllllvalllfvYYtiwvil.lPfvdedhvlhkyflpreyairipvillvvlllf 60 
                 G++l l++ l f+ Y +w  l  Pf++       y+++r +a+ ip++++++l+ +
  CCE27312.1  94 GFVLYLFSSLTFLMYVLWSYLpSPFLHALG--IYYYPNRWWALAIPAFIVMLLCYI 147
                 99****************87658***8877..67999**********998877654 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.7    0.0002      0.73      44      89 ..      95     155 ..      92     171 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0002
  Phage_holin_3_6  44 gvlallalllllvala...........lalaa....lwlaali.vaavllvlagvlalvglk 89 
                       vl l++ l++l+ ++           l++      +w+a  i  ++v+l+  + +al++++
       CCE27312.1  95 FVLYLFSSLTFLMYVLwsylpspflhaLGI-YyypnRWWALAIpAFIVMLLCYIYVALAAYN 155
                      566777777777777557778887755555.25699*******5566666666666666665 PP

>> Rab5ip  Rab5-interacting protein (Rab5ip)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.5   0.00026      0.94      24      76 ..      91     148 ..      87     154 .. 0.76
   2 ?    1.6   0.1      0.12   4.2e+02      27      66 ..     138     210 ..     135     213 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
      Rab5ip  24 slsGflfylllsllvsllfy.alkvkgkskk....yfrgalkelwteglvnglagFvL 76 
                  ++Gf++yl++sl + ++++ +++ +++ ++    y++++++ l +  ++  l+ ++ 
  CCE27312.1  91 EYYGFVLYLFSSLTFLMYVLwSYLPSPFLHAlgiyYYPNRWWALAIPAFIVMLLCYIY 148
                 599*****988876655555344445555558999*********99999998888885 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
      Rab5ip  27 Gflfylllsllvsllfyalkvkgkskkyfrg.................................alkelwteg 66 
                 +f++ ll+++ v+l+ y+ ++ + + + ++                                  +++e+w eg
  CCE27312.1 138 AFIVMLLCYIYVALAAYNTEILTVPMRSVETivdgagkpavidskgrlrgsgnrerkrdsggrlRWREVWNEG 210
                 6777777777777777765555444332222333344444444444555555666666666666777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1837.45
//
Query:       CCE27313.1  [L=752]
Description: related to ATP-dependent RNA helicase ROK1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-25   89.2   0.1    1.1e-15   57.8   0.0    2.4  2  DEAD         DEAD/DEAH box helicase
    3.9e-24   85.1   0.0    1.5e-23   83.3   0.0    2.0  2  Helicase_C   Helicase conserved C-terminal domain
    1.2e-06   28.6   0.0    1.7e-05   24.9   0.0    2.5  2  ResIII       Type III restriction enzyme, res subunit
      0.002   16.5   5.5      0.002   16.5   5.5    2.1  2  Nop14        Nop14-like family
     0.0045   17.1   5.3     0.0045   17.1   5.3    2.6  3  YL1          YL1 nuclear protein
  ------ inclusion threshold ------
       0.17   10.2  13.6      0.011   14.1   5.8    2.1  2  CDC45        CDC45-like protein
       0.77    8.9   9.3       0.46    9.6   4.8    2.1  2  TRAP_alpha   Translocon-associated protein (TRAP), alpha subu
        1.3    8.9  11.5        1.7    8.5   4.9    2.3  2  Sigma70_ner  Sigma-70, non-essential region
        1.3    9.1  17.4        4.7    7.3   1.7    2.5  2  DUF2052      Coiled-coil domain containing protein (DUF2052)
        2.3    8.2   9.8      0.087   12.8   1.1    2.4  2  DUF4614      Domain of unknown function (DUF4614)
        8.9    5.5  12.5         19    4.5  12.5    1.4  1  NOA36        NOA36 protein


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   6.9e-19   1.1e-15       2      94 ..     206     317 ..     205     324 .. 0.80
   2 !   28.9   0.0     5e-10   8.2e-07      84     175 ..     368     457 ..     346     458 .. 0.78

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 6.9e-19
                 HHHHHHHHHHH.............TTCEEEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEE CS
                 xxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.............gggdvlvaaeTGsGKTlaflipvlqivyet......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlli 81 
                 ++Q  ++pl+l             +g d+l+ a+TGsGKT  flip++++++++       g ++  aliv+PtreL++q++n+ +k+ + ++++++++
  CCE27313.1 206 EVQMGSLPLLLrpelaltdvgnleHGVDFLAVAPTGSGKTISFLIPAIDKIVKRrerenvGGVRELEALIVAPTRELVHQIVNEGNKLVQGTGIKIVAM 304
                 566666666665555555555554668************************99989887778888**************************99999988 PP

                 ETTSSHHHHHHHH CS
                 xxxxxxxxxxxxx RF
        DEAD  82 iggvaardqlskl 94 
                  ++ +   +++++
  CCE27313.1 305 KKERQLAAEQQVI 317
                 7766665555554 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 5e-10
                 TSSHHHHHHHHHTTCSEEEEEHHHHHHHH....HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  84 gvaardqlskldngvdivvgtpgrlddll....stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 g+a++ ++ + + ++di+v+tp+ l+++l    s  +  l  vr l+lDEad lld  f+++   + +++      ++++ ++ + SAT+ +++++
  CCE27313.1 368 GKAKKAKKPHPETKTDILVTTPQLLLNFLqsgpSGTHKVLPTVRDLILDEADVLLDPLFKETTLGLWTAC------TNENLRISFWSATMGSNIET 457
                 45555555555678*************9977763333369**********************99988888......234556********999886 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       8.4   1.4e+04      19      51 ..     273     309 ..     269     318 .. 0.55
   2 !   83.3   0.0   9.2e-27   1.5e-23      19     111 .]     531     630 ..     527     630 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 8.4
                 EEEEESSHHHHHHHHHHHHHT......TSTEEEESTTST CS
  Helicase_C  19 ilifvntidrlekvklllekk......gikvavlhgelp 51 
                 +li+++t++ ++  ++++e +      gik++++  e +
  CCE27313.1 273 ALIVAPTRELVH--QIVNEGNklvqgtGIKIVAMKKERQ 309
                 678888888665..3332222233335677766666544 PP

  == domain 2  score: 83.3 bits;  conditional E-value: 9.2e-27
                 EEEEESSHHHHHH.HHHHHHHT.........TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTS CS
  Helicase_C  19 ilifvntidrlek.vklllekk.........gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRt 107
                  l+f++tidr+    + l   k         + ++a+lh+ l  + r +i+++f++g++ vLi+tdv++rG+d+ +vn V+n+d+p + + y++r+GRt
  CCE27313.1 531 FLVFTQTIDRAMAlHEEL---KydipleaggSSRIAALHSALADSARSAIMRKFRAGDIWVLITTDVLARGVDFAGVNGVVNYDVPGSAAAYVHRAGRT 626
                 59*******884343333...12344555578******************************************************************* PP

                 SSTT CS
  Helicase_C 108 gRag 111
                 gRag
  CCE27313.1 627 GRAG 630
                 **97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.9       2.1   3.4e+03      73      89 ..     132     154 ..     106     173 .. 0.47
   2 !   24.9   0.0   1.1e-08   1.7e-05      27     119 ..     234     397 ..     220     418 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.1
                 HGGGGTGG..........GEEEE CS
      ResIII  73 efkkflseayke......igkkv 89 
                 + k  +s+++++      ++kk+
  CCE27313.1 132 QNKINKSNKKQRavleekKKKKK 154
                 22222222222233222111112 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 1.1e-08
                 EEEEESTTSTHHHHH.HHHHHHH-S.............-EEEEESSHHHHHHHHHHG.......................................... CS
      ResIII  27 glikmaTGtGKTlva.aklierllkkgkee........kflflvprkslleqtleef.......................................... 74 
                 +l +++TG+GKT+   + +i+++ k +++e        ++l+++p+++l+ q  +e                                           
  CCE27313.1 234 FLAVAPTGSGKTISFlIPAIDKIVKRREREnvggvrelEALIVAPTRELVHQIVNEGnklvqgtgikivamkkerqlaaeqqvivdngsenddddddee 332
                 68899********99899******999988************************999666777777777777777777777777777777777777766 PP

                 ..............GGGTGG....GEEEESSS-B--......................-SEEEEEHHHHHHTH. CS
      ResIII  75 ..............kkflseaykeigkkvsgdkkka...............kekdstnkkilvttiqsldadse 119
                               +         +++++++d+ ++               k + +t+++ilvtt q l + ++
  CCE27313.1 333 edgsesdsnsetesA---------EEEEKKKDTTHQtkprargrgkakkakKPHPETKTDILVTTPQLLLNFLQ 397
                 666554443222110.........22222222222223334555555555555667777777777777776665 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   3.5      0.18   2.9e+02     275     297 ..     135     157 ..      76     191 .. 0.48
   2 !   16.5   5.5   1.2e-06     0.002     372     455 ..     319     394 ..     280     424 .. 0.45

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.18
       Nop14 275 lakeekerLeklEeeRlkRMrge 297
                 + k +k++   lEe++ k+ +ge
  CCE27313.1 135 INKSNKKQRAVLEEKKKKKKKGE 157
                 11111111111222222222221 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.2e-06
       Nop14 372 eeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeelleeekkaaeekkekkkkkkkseekakeelpytfpcPeshee 455
                 ++++++++++d+ee      ++ ++sd +se e+ e+e +++ +++++k ++  + k kk+kk   ++k+++   ++ P+ + +
  CCE27313.1 319 DNGSENDDDDDDEE------EDGSESDSNSETESAEEEEKKKDTTHQTKPRARGRGKAKKAKKPHPETKTDI--LVTTPQLLLN 394
                 11111111111111......1112222222222222222222222222222222222233333344444444..3445555555 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  10.4      0.13   2.2e+02     114     183 ..      64     155 ..      12     169 .. 0.52
   2 !   17.1   5.3   2.8e-06    0.0045      51     102 ..     322     375 ..     301     429 .. 0.58
   3 ?   -3.9   1.1       7.6   1.2e+04     144     166 ..     696     718 ..     659     737 .. 0.47

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.13
                 x...........xxxxx.xxxxxxxxxxxxxxxxx......xxxx.....xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1 114 p...........qakep.rpkkkseraswlpaesl......ltpk.....rRkssRastven....keqleerlkereerrkkilermrkkaarkkk 183
                 +           q+++p ++k +s+ +++ p+ +       +  k     +R+  R++ ++     k + ++++ +++++   ++++ ++k+++kkk
  CCE27313.1  64 ElpivdffapptQQETPaSKKGESHVVDRAPSPEApapaaaK--KlteeeCRQLLRSHRLKIallsKHEEQNKINKSNKK---QRAVLEEKKKKKKK 155
                 044444665443111221222222333333333333333331..144456777777766633333388888888888666...34433333333333 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2.8e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxx RF
         YL1  51 sdfdsdeedeesdeeedeeegekelerqerkkr....kkekkkrkaqkkkskkkkk 102
                 s+ d+d++dee+d++e ++++e e  ++e kk+    +   k r++ + k+kk+kk
  CCE27313.1 322 SENDDDDDDEEEDGSESDSNSETESAEEEEKKKdtthQ--TKPRARGRGKAKKAKK 375
                 23344444444455555555555544444444423221..1111111111111111 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 7.6
                 xxxxxxxxxxxxxxxxxxxxxxx RF
         YL1 144 ssRastvenkeqleerlkereer 166
                  sR+s    ++q+ ++   +++r
  CCE27313.1 696 ESRRSGNGGRAQITSKSGYERTR 718
                 22222222222222222222222 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.9     0.087   1.4e+02     162     190 ..     134     165 ..      97     207 .. 0.55
   2 ?   14.1   5.8   6.8e-06     0.011     126     200 ..     312     372 ..     289     408 .. 0.46

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.087
       CDC45 162 edeeeskkkrk...sksdeeeesddddersrk 190
                 + ++++kk+r    +k++++++ ++ d++s+ 
  CCE27313.1 134 KINKSNKKQRAvleEKKKKKKKGEEGDSKSKG 165
                 11111111111111111111111222222222 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 6.8e-06
       CDC45 126 leeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrsepsakk 200
                  e++  +d  +  +e +dddd++eee+ +e+++++e+++ e+++k+k+++        +++++r r r +  akk
  CCE27313.1 312 AEQQVIVD--N-GSE-NDDDDDDEEEDGSESDSNSETESAEEEEKKKDTT--------HQTKPRARGRGK--AKK 372
                 22222222..1.122.2222222222222223232333323222322111........112222222222..111 PP

>> TRAP_alpha  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.11   1.8e+02      39      85 ..     136     176 ..     110     188 .. 0.53
   2 ?    9.6   4.8   0.00028      0.46      26      84 ..     321     389 ..     299     400 .. 0.47

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.11
  TRAP_alpha  39 vdveaedeeveeeeeeeeeeeeeeeedeeelkaspdadttilFtkpv 85 
                 + +++ +++v   ee+++    + ++ ee  ++s+  +tt lF +p+
  CCE27313.1 136 NKSNKKQRAVL--EEKKK----KKKKGEEGDSKSKGKKTTNLFPQPL 176
                 11111122222..22222....2222222334566777888887776 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00028
  TRAP_alpha  26 aaaaeedevdde.....lvdveaedeeveeeeeeeeeeeeeeeedee............elkaspdadttilFtkp 84 
                  +++++d+ dde       d+++e e++eeee++++++++      +            + k++p+++t il t p
  CCE27313.1 321 GSENDDDD-DDEeedgsESDSNSETESAEEEEKKKDTTHQ------TkprargrgkakkAKKPHPETKTDILVTTP 389
                 22222222.2221222222222222222222222222211......122334444444478899999999999876 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.5     0.021        33      43      89 ..     141     191 ..      90     206 .. 0.73
   2 ?    8.5   4.9     0.001       1.7      31      74 ..     319     365 ..     252     385 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.021
  Sigma70_ner  43 edeeeeeee..eddd....eeeseseaadeeelkeealekfeelreqyeklrk 89 
                  ++++  ee+  +  +    e++s+s+ +++  l ++ le f +lr++y   r 
   CCE27313.1 141 KQRAVLEEKkkK--KkkgeEGDSKSKGKKTTNLFPQPLESFGDLRTTYGISRT 191
                  222222222221..1223357899999*******************9987665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.001
  Sigma70_ner  31 D...eeeeeeeeeeeedeeeeeeeedddeeeseseaadeeelkeeal 74 
                  D   e+++++++eee+ +e+++++e + +ee+e++++ +++ k++a+
   CCE27313.1 319 DngsENDDDDDDEEEDGSESDSNSETESAEEEEKKKDTTHQTKPRAR 365
                  23322222222222222222222233334444555555555555554 PP

>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.7    0.0029       4.7      52     104 ..     113     164 ..      73     195 .. 0.68
   2 ?    6.5   8.2    0.0051       8.4      76     141 ..     312     376 ..     290     392 .. 0.39

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0029
     DUF2052  52 s...keeslseiLlrreeeaaaaerleaqqeeleeeeeeeeeeeeeeeeeeeeeee 104
                 +   ++++l+ +Ll++ ee++  ++ +++q++  ee+++++++ ee     +++++
  CCE27313.1 113 RqllRSHRLKIALLSKHEEQNKINKSNKKQRAVLEEKKKKKKKGEE----GDSKSK 164
                 0344679999999998888877776666666643333333333333....222222 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0051
     DUF2052  76 aqqeeleeeeeeeeeeeeeeeeeeeeeeedekekaea..deedeeeeeekeekeeeeekeeeaeaevl 141
                 a+q+     +++ +e+++++++eee+++e++++++ +  +ee++++++++++k + + + + ++a+++
  CCE27313.1 312 AEQQV---IVDNGSENDDDDDDEEEDGSESDSNSETEsaEEEEKKKDTTHQTKPRARGRGKAKKAKKP 376
                 22222...122222222222222222222222222221122222222222233333333333333333 PP

>> DUF4614  Domain of unknown function (DUF4614)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   2.0       1.1   1.8e+03      19      49 ..     131     161 ..     104     178 .. 0.48
   2 ?   12.8   1.1   5.3e-05     0.087      19     110 ..     329     420 ..     315     423 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.1
     DUF4614  19 sssssessssrslssssesslssksssstds 49 
                 ++++ ++s++++ + ++e++ ++k+ ++ ds
  CCE27313.1 131 EQNKINKSNKKQRAVLEEKKKKKKKGEEGDS 161
                 2222222222222222222222222222222 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 5.3e-05
     DUF4614  19 sssssessssrslssssesslssksssstdsksssqssestkkrsktktrttvketavqTsdpalayqwtkaagvaalgpalggayvdptpi 110
                   ++++ s+s+s s++++ + ++k+++ t+ ++++ + + + k++k+ + +t++++ v T +  l++  +  +g+  + p+++   +d +++
  CCE27313.1 329 DDEEEDGSESDSNSETESAEEEEKKKDTTHQTKPRARGRGKAKKAKKPHPETKTDILVTTPQLLLNFLQSGPSGTHKVLPTVRDLILDEADV 420
                 222122222222222222222222333333333344444445555557888999*******9999999888999999999999988888776 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  12.5     0.011        19     270     304 ..     319     353 ..     295     358 .. 0.55

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.011
       NOA36 270 ddegdedddddddeedddeeeddedeeeeeeeese 304
                 d+ +++dddddd+eed +e + ++++e+ eeee++
  CCE27313.1 319 DNGSENDDDDDDEEEDGSESDSNSETESAEEEEKK 353
                 44445555555555555555555555544444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1753  (0.0977746); expected 358.6 (0.02)
Passed bias filter:                      707  (0.0394333); expected 358.6 (0.02)
Passed Vit filter:                       135  (0.0075297); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.94u 0.33s 00:00:01.27 Elapsed: 00:00:00.49
# Mc/sec: 4591.29
//
Query:       CCE27314.1  [L=477]
Description: uncharacterized protein CPUR_00788 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-92  308.8   0.6    2.3e-92  308.8   0.6    1.4  2  DUF2401   Putative TOS1-like glycosyl hydrolase (DUF2401)
    1.1e-22   80.2   0.0    2.6e-22   79.0   0.0    1.7  1  DUF2403   Glycine-rich protein domain (DUF2403)


Domain annotation for each model (and alignments):
>> DUF2401  Putative TOS1-like glycosyl hydrolase (DUF2401)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2      0.93   8.4e+03      82     102 ..      34      52 ..      20      62 .. 0.68
   2 !  308.8   0.6   2.5e-96   2.3e-92       1     229 []     235     455 ..     235     455 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.93
     DUF2401  82 dCgyyregivayhGfgGakkv 102
                  Cg ++  ++ y+G +Ga k 
  CCE27314.1  34 YCGAVN--QIVYEGIKGAGKF 52 
                 577776..6778888888774 PP

  == domain 2  score: 308.8 bits;  conditional E-value: 2.5e-96
     DUF2401   1 gswkrvayYnaesgtaenlvFlnnkggksgsGvfdsalgnslsyassdgtsgassptvledvllssnkEiiifsdkkCedkdCgyyregivayhGfgGa 99 
                 ++w+rvayYnae++ aen++F++n+gg sgsGvfd+++g+slsy++++g +gassp++l+d+l++snkE++ifs++kC d++Cg++r ++vay+GfgGa
  CCE27314.1 235 SDWDRVAYYNAEKQIAENMIFMGNYGG-SGSGVFDTTWGASLSYLNAKGDGGASSPQILSDTLIPSNKEFAIFSAEKC-DGSCGFTRAKDVAYKGFGGA 331
                 58*************************.99************************************************.******************** PP

     DUF2401 100 kkvflfefsmpedkksssnkdmPAiWlLnakiprtaqYpgnaeCsCwksgCGelDifEvlesgseklkstlhtaqgaegggssdyfeRptdetikvavv 198
                 +kvflf+f+mp d+++s+n dmPA+W+Ln +iprtaqY+    CsCw++gCGe Di+Evl+sg++k+kst+h a+   g+gssdyf+Rp+d++ikva+v
  CCE27314.1 332 NKVFLFHFKMPLDGDRSFNGDMPALWALNGRIPRTAQYN---ACSCWQTGCGEADIYEVLTSGDTKCKSTFHLAN---GAGSSDYFDRPVDKYIKVAAV 424
                 **************************************5...7********************************...78******************* PP

     DUF2401 199 fdseestvkivelddstdfdeslsaetvesl 229
                 f++++++v+i++l+d++df++ l+++tv ++
  CCE27314.1 425 FHEKTASVSIKKLSDDVDFSKGLDDATVMKW 455
                 ****************************998 PP

>> DUF2403  Glycine-rich protein domain (DUF2403)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   2.9e-26   2.6e-22       1      62 [.      39      99 ..      39     100 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 2.9e-26
     DUF2403  1 daitytnvggsGsYkeVtsmdessgeCeteeksfsGplaPldeelSvhfRGPlkLkqfavYt 62
                ++i y++++g+G++k+Vt+m+ +sgeC+ e+k++sGplaPlde+lS+h+RGP+++k++avY+
  CCE27314.1 39 NQIVYEGIKGAGKFKAVTHMS-DSGECHYEDKHYSGPLAPLDEDLSIHIRGPISVKEVAVYN 99
                589******************.79*************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3336.06
//
Query:       CCE27315.1  [L=771]
Description: uncharacterized protein CPUR_00789 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-13   49.8   1.0      4e-13   49.0   0.0    1.8  2  Fungal_trans  Fungal specific transcription factor domain
    1.9e-08   34.3   8.6    3.3e-08   33.5   8.6    1.3  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       0.2   1.8e+03      40      80 ..     112     152 ..     106     189 .. 0.77
   2 !   49.0   0.0   4.5e-17     4e-13      34     189 ..     307     448 ..     274     453 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.2
  Fungal_trans  40 llailalGalfsesetkesnssltsesqefiafplraeili 80 
                   l+a ++ +++f+es++ +s +++ s  q+ +++  +a ++ 
    CCE27315.1 112 LYAPNCCASSFKESDEFKSVTDQLSRLQDEVKWMSQAIKTM 152
                   67778999999999999999999988888887777666665 PP

  == domain 2  score: 49.0 bits;  conditional E-value: 4.5e-17
  Fungal_trans  34 yaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLh 130
                   + ++ l l ++   al +es+ +++ + +  es          e++ ++++ s +s++  l  L ll+ y + s d  l +r++g ++rl+ +lgLh
    CCE27315.1 307 NDDNTLQLKMVLCCALVTESHGHSERAVRLYES---------MESVVNRKLMSDASHVKNLPLLCLLAGYRFLSNDEILSWRVIGQVMRLCMELGLH 394
                   444444444555555555555555544444443.........34444666778899999999*********************************** PP

  Fungal_trans 131 rnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcdd 189
                   ++   v+    ++ ++e ++   + +w+a++lD+++a+ +G p+   d++i+ +LP  +
    CCE27315.1 395 QKRGLVS----IQDDAE-RKNSLNSFWSAYVLDRRWAFGTGLPFAVQDDEIDPNLPLPE 448
                   *******....555555.8888999*******************88******9999766 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   8.6   3.7e-12   3.3e-08       2      33 ..      84     113 ..      83     116 .. 0.94

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 3.7e-12
                 S-HHHHHCT---STSSSS-HHHHHCTHHHCCC CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfy 33 
                 aC++C+++K+KC++++P C++C  lnl C  y
  CCE27315.1  84 ACNECKRRKIKCNGETP-CQRCGNLNLACL-Y 113
                 9****************.***********8.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       930  (0.0518713); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 5487.19
//
Query:       CCE27316.1  [L=564]
Description: related to Che-1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-29  100.9   0.1    1.2e-28   99.4   0.1    1.9  1  TRAUB      Apoptosis-antagonizing transcription factor, C-ter
    3.7e-28   98.9   0.3    3.7e-28   98.9   0.3    3.1  3  AATF-Che1  Apoptosis antagonizing transcription factor


Domain annotation for each model (and alignments):
>> TRAUB  Apoptosis-antagonizing transcription factor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.1   1.3e-32   1.2e-28       1      85 []     450     533 ..     450     533 .. 0.87

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 1.3e-32
       TRAUB   1 YqqLLkelvekksaessaaasdsrqllalqklrkkkkkkkkvDtkaSKGRklrYevheklqNFmapeergkweeeqidelfasLl 85 
                 Yq+LLkelv++++ e s ++++++ ++ +++ +++k + k+vD+kaSKGRk+r++vheklqNFmape+r++we+ +id++f +L+
  CCE27316.1 450 YQVLLKELVDQRTVEGSGKQASAVPTVMVTATKEAKLR-KQVDRKASKGRKMRFTVHEKLQNFMAPEDRRSWEQGAIDRFFGTLF 533
                 9************9998654544555556665555555.8********************************************8 PP

>> AATF-Che1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.1      0.24   2.2e+03      89     114 ..      88     117 ..      51     139 .. 0.50
   2 !   98.9   0.3   4.1e-32   3.7e-28       1     139 []     267     384 ..     267     384 .. 0.90
   3 ?    0.6   0.1     0.091   8.2e+02      67      87 ..     402     458 ..     388     518 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.24
   AATF-Che1  89 keeeekkkskrkrkkk....kkeetsleel 114
                 ++++e++++ ++ + +    ++e+++ +e+
  CCE27316.1  88 DQDSEQEEEDEEGDGDddddDDEDEEESEY 117
                 222222222222222211113333333333 PP

  == domain 2  score: 98.9 bits;  conditional E-value: 4.1e-32
   AATF-Che1   1 DaeKGkaVknQlklwDslLelRIklQkaltaanqLpqpetlkeflesseefeealeeaekalkklleslleLreelleqneikklaeskeeeekkkskr 99 
                 D++KG a+++Q+k++D lL+lRI+lQkal+aan++p+ +        s+  +e +e+ae+a++kll+++ +Lre++      +       +++  ++kr
  CCE27316.1 267 DVDKGIAIQKQRKIYDGLLNLRIRLQKALVAANSFPTVDPG------SDGDSEPYEAAEEAAMKLLNTISSLRENF------A-------TQTAVGTKR 346
                 89**********************************86643......456789***********************......4.......344577899 PP

   AATF-Che1 100 krkkkkkeetsleelwkeleklekalkpfrnatldkWseK 139
                 kr+ + +   s +++wk+l++ ++a++pfr++t +kWs+K
  CCE27316.1 347 KRDLEIS--MSNADIWKQLQEEDAAATPFREDTMEKWSKK 384
                 9987766..7889*************************98 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.091
   AATF-Che1  67 eslleLreelleqne.ikkla...................................e 87 
                 + + +L+e+ll+ n+ + k +                                    
  CCE27316.1 402 NLMSALQEQLLAPNNrLVKRSkvprscapaqlaqkvteddyvyddadfyqvllkelV 458
                 456778888888777744433344444455555555555555555555554444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:00.48
# Mc/sec: 3502.60
//
Query:       CCE27317.1  [L=293]
Description: related to Nbp35p and human nucleotide-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-94  315.2   0.1    3.1e-94  315.0   0.1    1.0  1  ParA         NUBPL iron-transfer P-loop NTPase
    1.7e-11   44.3   0.0      6e-11   42.5   0.0    1.8  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    2.3e-09   37.4   0.3    4.3e-07   30.0   0.1    2.1  2  AAA_31       AAA domain
    0.00016   21.1   0.0    0.00022   20.6   0.0    1.3  1  MipZ         ATPase MipZ
    0.00021   20.8   0.0       0.15   11.5   0.0    2.4  2  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
     0.0006   19.1   0.2      0.011   14.9   0.0    2.3  3  ArsA_ATPase  Anion-transporting ATPase
     0.0027   17.6   0.2       0.17   11.7   0.0    2.2  2  AAA_26       AAA domain
  ------ inclusion threshold ------
       0.01   15.3   0.6      0.098   12.1   0.3    2.0  2  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
      0.088   12.4   0.2       0.17   11.4   0.2    1.4  1  AAA_25       AAA domain


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.0   0.1   1.6e-97   3.1e-94       2     245 ..      44     287 ..      43     288 .. 0.97

  Alignments for each domain:
  == domain 1  score: 315.0 bits;  conditional E-value: 1.6e-97
        ParA   2 vkkviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpeqsekkliPveakgikvmSigfllesedeavvwrGpmkskai 100
                 v kviav+S+KGGVGKStva+nl+la+a+ g++ g+lD+Di+Gpsip+l+++++e   +++++l+P++++g+k+mS+g+l+  e+++vvwrGpm++kai
  CCE27317.1  44 VGKVIAVSSAKGGVGKSTVAANLSLAFARLGFRAGILDTDIFGPSIPTLFNLSGEPRLSQHNQLVPLTNYGVKTMSMGYLVG-ENAPVVWRGPMVMKAI 141
                 779***************************************************877777889******************9.**************** PP

        ParA 101 kqllkdvewgelDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteifgk.gggekla 198
                 +qll++v+wg lD+L++DlPPGtgD+qlt++q++ l+g viVttp+++a++d+ k+i+mfk+v+v++lG+v+Nms f+cp+c+ +t++fg+ + +ekl+
  CCE27317.1 142 QQLLHEVDWGALDILVLDLPPGTGDTQLTITQQVILDGSVIVTTPHTLATKDAIKGINMFKTVDVNILGLVQNMSLFTCPHCHGETNVFGSnERVEKLC 240
                 *****************************************************************************************663789**** PP

        ParA 199 eelgvpllgeipldpeireasdegkplvlkepeseaakaleeiaekv 245
                 +e+g+++lg+ipl+p+i + +++gkp+v++ep+s+ a+a+ +ia+++
  CCE27317.1 241 TEHGMDFLGDIPLHPSIGDDGERGKPTVVSEPSSTRASAFLQIAQTI 287
                 ********************************************987 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0     3e-14     6e-11       1     127 [.      48     266 ..      48     268 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 3e-14
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 ia+ s kGGvGK+t+aanL  a+ar g+r   +D+D  +++  +l+ l+++ +                                              
  CCE27317.1  48 IAVSSAKGGVGKSTVAANLSLAFARLGFRAGILDTDIFGPSIPTLFNLSGEPRLsqhnqlvpltnygvktmsmgylvgenapvvwrgpmvmkaiqqllh 146
                 7999***************************************9999999999999******************************************* PP

                 ..............................................CCHCCCHHHHHHCHCHHHH..EEEEEEEE.......ESS...-TTCHHHHHHH CS
                 ..............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxx RF
        CbiA  55 ..............................................dlkrllellealgkkkalllkiagvvlnr.......vdgeneetllkealeel 100
                                                               d++++++++++++ +      i+g+v n+         ge +    +e +e+l
  CCE27317.1 147 evdwgaldilvldlppgtgdtqltitqqvildgsvivttphtlatkDAIKGINMFKTVDVN------ILGLVQNMslftcphCHGETNVFGSNERVEKL 239
                 **********************************************999999999999965......44444443221111134444444567888999 PP

                 HHHCTS-EEEEEE--CCHCCCCHHTS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA 101 kqrygvpvlgviprdeavaeapargep 127
                 + ++g+ +lg ip   ++ +  +rg+p
  CCE27317.1 240 CTEHGMDFLGDIPLHPSIGDDGERGKP 266
                 999999999999999999999998885 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1   2.2e-10   4.3e-07       1      39 [.      45      83 ..      45      92 .. 0.95
   2 !    5.6   0.0    0.0067        13     108     168 ..     142     205 ..     126     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 2.2e-10
      AAA_31  1 gkvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlD 39
                gkvIa++  KGGvGK+T + nl+ a+a+lg +  + D D
  CCE27317.1 45 GKVIAVSSAKGGVGKSTVAANLSLAFARLGFRAGILDTD 83
                59******************************9999998 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0067
      AAA_31 108 kellekvk.deYDyiiiDcpPsLg..lltenaLvasdsviipvqaeayaleGleqllktieevk 168
                 ++ll++v+    D+ ++D pP  g   lt++  v+ d  +i++ ++ +a++ + + ++++++v+
  CCE27317.1 142 QQLLHEVDwGALDILVLDLPPGTGdtQLTITQQVILDGSVIVTTPHTLATKDAIKGINMFKTVD 205
                 556666652358*********9984457888889999999999**9*99998877777777665 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.1e-07   0.00022       2      43 ..      47      88 ..      46     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.1e-07
                EEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-H CS
        MipZ  2 vivlgnekGGsGksttavhvavaLlkkGarvaaidldlrqrt 43
                vi ++  kGG Gkst+a  +  a+++ G+r + +d d+   +
  CCE27317.1 47 VIAVSSAKGGVGKSTVAANLSLAFARLGFRAGILDTDIFGPS 88
                89999*******************************986555 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   7.4e-05      0.15       7      30 ..      53      76 ..      46      95 .. 0.85
   2 !    7.4   0.0    0.0013       2.6     185     246 ..     228     289 ..     110     292 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.4e-05
   Fer4_NifH  7 GkGGiGksttsqnlsaalaemgkk 30
                 kGG+Gkst ++nls a+a+ g +
  CCE27317.1 53 AKGGVGKSTVAANLSLAFARLGFR 76
                69*****************99866 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0013
   Fer4_NifH 185 kvddereliekfaeelgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrelarkile 246
                 +v   +e +ek+ +e g++ l  +P++  +     r k ++  +p+s  a  + ++a+ i +
  CCE27317.1 228 NVFGSNERVEKLCTEHGMDFLGDIPLHPSIGDDGERGKPTVVSEPSSTRASAFLQIAQTISS 289
                 56678899***********************999999988889999999*********9976 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.6e-06     0.011       7      38 ..      52      83 ..      46     108 .. 0.83
   2 ?    1.4   0.0     0.075   1.5e+02     113     138 ..     141     167 ..     136     178 .. 0.85
   3 ?   -2.3   0.0      0.97   1.9e+03     210     246 ..     181     218 ..     169     238 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.6e-06
                 EESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase  7 gGKGGVGKttvsaatavklsekgkkvllistD 38
                 + KGGVGK+tv+a +++  ++ g +  ++ tD
   CCE27317.1 52 SAKGGVGKSTVAANLSLAFARLGFRAGILDTD 83
                 67********************9999999998 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.075
                  HHHHHHHHHCSSSSEEEEESBS.CCHT CS
  ArsA_ATPase 113 feellkyvkeeeydvvvlDtaP.TGht 138
                   ++ll++v+    d++vlD +P TG+t
   CCE27317.1 141 IQQLLHEVDWGALDILVLDLPPgTGDT 167
                  6778888999999********988887 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.97
                  EEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEE.E- CS
  ArsA_ATPase 210 rlVvipEklslkEteRaikeLkkygikvdavivNk.ll 246
                  ++V++p  l+ k+  + i+ +k +++++  ++ N  l+
   CCE27317.1 181 VIVTTPHTLATKDAIKGINMFKTVDVNILGLVQNMsLF 218
                  57899999999999999999999999998888887444 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.022        44       2      33 ..      47      78 ..      46      80 .. 0.85
   2 !   11.7   0.0   8.6e-05      0.17     132     195 ..     181     258 ..     163     260 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.022
      AAA_26  2 tifvtgtdtgvGKTvvslgLvralkrkgvkvg 33
                 i v++   gvGK++v++ L  a+ r g+++g
  CCE27317.1 47 VIAVSSAKGGVGKSTVAANLSLAFARLGFRAG 78
                5789999*************999987777766 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 8.6e-05
      AAA_26 132 ilVargglgtinqllltiealrqknvrvlGvilNk....vrnp............envetlekksgipvlGvvPylpdle 195
                 ++V+++++ + ++++  i+++++ +v++lG++ N     +  p            e+ve+l++ +g++ lG +P  p+++
  CCE27317.1 181 VIVTTPHTLATKDAIKGINMFKTVDVNILGLVQNMslftC--PhchgetnvfgsnERVEKLCTEHGMDFLGDIPLHPSIG 258
                 56777777778889999*****************966432..34577666666666******************999876 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   4.9e-05     0.098       2      37 ..      46      81 ..      45      86 .. 0.91
   2 ?    1.3   0.0       0.1     2e+02     104     148 ..     140     187 ..     115     192 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.9e-05
    CBP_BcsQ  2 kvlalqGvRGGvGttsllaaLawalhelgesvlviD 37
                kv+a++  +GGvG+++++a L+ a+ +lg +  ++D
  CCE27317.1 46 KVIAVSSAKGGVGKSTVAANLSLAFARLGFRAGILD 81
                689999**********************99887777 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.1
    CBP_BcsQ 104 allaalkelk.eqyrwillDlpagasaltrel..laladlvllvvepd 148
                 a+++ l+e+  +  + ++lDlp g+ +++ ++  +   d ++ v++p 
  CCE27317.1 140 AIQQLLHEVDwGALDILVLDLPPGTGDTQLTItqQVILDGSVIVTTPH 187
                 3444455555566677999***97765544440044457777777775 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   8.7e-05      0.17      34      59 ..      47      72 ..      36      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.7e-05
      AAA_25 34 elallaGapgtGKttlaldlalavat 59
                 +a+  + +g+GK+t+a +l+la a+
  CCE27317.1 47 VIAVSSAKGGVGKSTVAANLSLAFAR 72
                5667789****************993 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2086.63
//
Query:       CCE27318.1  [L=281]
Description: uncharacterized protein CPUR_00792 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-05   22.9   0.0    9.9e-05   22.1   0.0    1.4  1  Tudor_3    DNA repair protein Crb2 Tudor domain
     0.0012   18.6   0.0     0.0025   17.6   0.0    1.5  1  LBR_tudor  Lamin-B receptor of TUDOR domain
  ------ inclusion threshold ------
      0.052   13.1   0.1       0.09   12.3   0.1    1.3  1  IL6        Interleukin-6/G-CSF/MGF family
      0.059   14.0   3.2      0.059   14.0   3.2    1.8  2  Com_YlbF   Control of competence regulator ComK, YlbF/YmcA
       0.09   11.3   0.3       0.16   10.5   0.3    1.3  1  RRN3       RNA polymerase I specific transcription initiation
        0.1   12.2   0.3        0.3   10.7   0.1    1.8  2  SASA       Carbohydrate esterase, sialic acid-specific acetyl
       0.46   10.7   5.8       0.43   10.8   3.7    2.0  2  ACBP       Acyl CoA binding protein


Domain annotation for each model (and alignments):
>> Tudor_3  DNA repair protein Crb2 Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.9e-08   9.9e-05       3      50 ..     108     157 ..     106     158 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.9e-08
                 GEEEEE-SSSS--EEEEEEEEEEE-SSS.EEEEEETTS.-EEEEETTSEE CS
     Tudor_3   3 nrVfAlfkGkkraYYPAtclgvsssgsq.rykVrFdDg.tpeevdskqvr 50 
                 + V+A + + ++++Y A++ + ++s+++  y+V+F  + t+e++ sk ++
  CCE27318.1 108 DTVMAKWLSGDKNFYQARITSITGSSANpIYTVKFKSYdTTETLRSKDLK 157
                 67************************************788888777665 PP

>> LBR_tudor  Lamin-B receptor of TUDOR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   9.6e-07    0.0025       5      55 .]     103     157 ..     100     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9.6e-07
   LBR_tudor   5 kfqdgevVmgRW.PGSsLyyevkvlsf..dekkqlYtVkyk..DGTelelkesdik 55 
                  ++  ++Vm++W  G + +y+ +++s   ++++ +YtVk+k  D T + l+ +d+k
  CCE27318.1 103 IYHVNDTVMAKWlSGDKNFYQARITSItgSSANPIYTVKFKsyD-TTETLRSKDLK 157
                 58899*******779*********99833566779*****9544.55578888776 PP

>> IL6  Interleukin-6/G-CSF/MGF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.5e-05      0.09      94     146 ..      12      66 ..       4      76 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.5e-05
                 HHHHHHHHHHHHT--HHHHHHH..HHHHHHHHHHHHHHHHHHHHS--------HH CS
         IL6  94 lefqiyleylqnkfegekenvk..alqkstkaliqilkqkvknleeittpdPttn 146
                 +++q  l+ + ++++++ +n++  alq++ ++li++l++++++l     p+P+++
  CCE27318.1  12 QQYQEQLDIIVQQLRDDPDNAEllALQEELNTLIDMLNENIAELRPNHAPKPAAK 66 
                 679999*********999986523789******************9999*99986 PP

>> Com_YlbF  Control of competence regulator ComK, YlbF/YmcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   3.2   2.3e-05     0.059      56     102 ..       8      54 ..       1      55 [. 0.84
   2 ?   -2.2   0.3       2.5   6.4e+03      29      40 ..     212     223 ..     197     243 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
                 ----HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Com_YlbF  56 eelkeeekkelqelkeeldknplvkeyleaeqelnellqevnkiiae 102
                 ee++++ +++l+ + ++l+ +p+ +e+l+ ++eln+l++ +n+ iae
  CCE27318.1   8 EEERQQYQEQLDIIVQQLRDDPDNAELLALQEELNTLIDMLNENIAE 54 
                 4444445559***********************************86 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
                 HCSHHHHHHHHH CS
    Com_YlbF  29 eedeelqklike 40 
                 ++ +el +  ++
  CCE27318.1 212 KAKKELEAGKAK 223
                 333333222222 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   6.4e-05      0.16      14      68 ..       5      60 ..       4      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.4e-05
        RRN3 14 nALeekekgdseqydeLleqfsekkeeseaps.laelkqllkalssvvsrLershs 68
                 A+ee+ ++ +eq+d +++q++ ++++ e    ++el++l+++l +++++L  +h+
  CCE27318.1  5 AAIEEERQQYQEQLDIIVQQLRDDPDNAELLAlQEELNTLIDMLNENIAELRPNHA 60
                599999999****************88887762568***************88875 PP

>> SASA  Carbohydrate esterase, sialic acid-specific acetylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00012       0.3     134     179 ..       8      53 ..       5      67 .. 0.80
   2 ?   -2.3   0.0       1.1   2.8e+03      92     114 ..     109     132 ..     106     141 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
        SASA 134 eedaeaYkekleklvedlrkdlgapdlpvivvqlasgekkfvevvr 179
                 ee+ ++Y+e+l+ +v++lr+d ++ +l+ ++ +l++  +  +e++ 
  CCE27318.1   8 EEERQQYQEQLDIIVQQLRDDPDNAELLALQEELNTLIDMLNENIA 53 
                 67889****************************9985444444444 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
        SASA  92 tsieeWekge.slYeelvkrakaa 114
                 t +++W +g+ ++Y++ ++ +  +
  CCE27318.1 109 TVMAKWLSGDkNFYQARITSITGS 132
                 678899999769999998887655 PP

>> ACBP  Acyl CoA binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.6   9.3e+03       4      30 ..      14      37 ..      12      37 .. 0.66
   2 ?   10.8   3.7   0.00017      0.43      38      74 ..     197     240 ..     191     245 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.6
                HHHHHHHH.H...HSTS---HHHHHHH CS
        ACBP  4 Fekavaavkklekklkkkpsneeklel 30
                +++ ++++ +   +l+ +p+n+e+l l
  CCE27318.1 14 YQEQLDIIVQ---QLRDDPDNAELLAL 37
                5556666655...66778899988876 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00017
                 HTSS--S..----TTSH.....HHHHHHHHHHHTTT--HHHHHH CS
        ACBP  38 teGdvnt..srPsaldf.....kgkaKwdaWkalkglskeeAkk 74 
                 +eGd +   ++P+ ++      +gkaKw+a+++++++sk+  kk
  CCE27318.1 197 QEGDEPVkaHKPKKIKAkkeleAGKAKWQAFNSKSKMSKTGSKK 240
                 5555533324775555455556788**************97776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1087  (0.060628); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2177.97
//
Query:       CCE27319.1  [L=544]
Description: related to tyrosinase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-41  142.2   0.1      5e-41  141.4   0.1    1.3  1  Tyrosinase  Common central domain of tyrosinase


Domain annotation for each model (and alignments):
>> Tyrosinase  Common central domain of tyrosinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.4   0.1   2.8e-45     5e-41       2     219 ..      73     308 ..      72     310 .. 0.74

  Alignments for each domain:
  == domain 1  score: 141.4 bits;  conditional E-value: 2.8e-45
                 TSHHHHHHCCSSS--SSTSSSS.........S-TSSTTHHHHHHHHHHHHHHHH....HHH.........HHH...THCSEEEB--TSS-....-SS-- CS
  Tyrosinase   2 ssydqlagiHgipftewkeeee.........caHgnalFltWHRaYlllfEqal....rei.........cgy...apdvtlPYWDwaadksspldesp 75 
                  sy+q++giHg+p+ ew++            c Hg+ lFl+WHR+Y+llfEq l    ++i         ++y   a++++ P+WDw++d  s++    
  CCE27319.1  73 LSYFQVSGIHGLPYIEWENGGPlradgwrgyCPHGESLFLPWHRPYVLLFEQVLvaeaQKIaatypesvrSQYvdaANTLRAPFWDWSRD--SNVPP-- 167
                 69***************66555********************************755444499999999855567799************..33333.. PP

                 HHHH-SEEE-TTCCGE..-EEEEE-TTT--BESSSSS-G-SBTTCTCB-CTS-CGGGGGS-BTCSSHHHHHH-GGGHHHHH--SHHHHHHHHHH----- CS
  Tyrosinase  76 eslggdgatipeenls..ggcvisnplakytlkkklgpkakgtlkseenklaanprclkrenaelsaelatassleellkksesytsfsntlegkkske 172
                  +    + t++ ++++  +++ i+npl++yt ++        +++s      + +   +r  a  s+ ++++++l +l  k+e+y +f  +++ ++  +
  CCE27319.1 168 -CSVPATLTVNIPDGEnlTTTRIKNPLQTYTYPR--------KARSGLFGPFTRSPTTSRCPAPNSYPYTANRRLGQLGLKQETYDAFTYSRTFNQFAN 257
                 .333333333333333334789********9944........334455555555555555555556666666666666666666666666555554444 PP

                 ---....HHHHHHHHHHHHHESSSTTSTTCGGGSTHHHHHHHHHHHHHHHH CS
  Tyrosinase 173 esa....lespHnavHvwvGangdmgdvataafDPiFflHHaniDrlwaiW 219
                 +++    le++Hn +H + G  g+  d ++aafD +F+lHH+ +Drlwa +
  CCE27319.1 258 SREdgigLEQIHNSIHFYAGCGGQFLDSNVAAFDGLFMLHHSHVDRLWAYY 308
                 444566699***************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 4245.90
//
Query:       CCE27320.1  [L=808]
Description: related to replication protein CDC23 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-17   63.0   2.0    2.7e-17   62.3   2.0    1.4  1  zf-primase       Primase zinc finger
     0.0095   15.9   0.0      0.019   15.0   0.0    1.5  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
       0.16   12.0   6.4      0.035   14.1   1.4    2.5  2  FlxA             FlxA-like protein
          5    6.8  15.9       0.12   12.0   5.4    2.9  3  Cwf_Cwc_15       Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> zf-primase  Primase zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   2.0   6.1e-21   2.7e-17       1      46 []     496     541 ..     496     541 .. 0.99

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 6.1e-21
  zf-primase   1 GrskDlglCkatkkdgkkCgswvnkrkgeyCdfHvqsavkkarakR 46 
                 G+++Dl++C+++kkdg  Cg+wvnk+k+++C+fH ++av+k ra+R
  CCE27320.1 496 GSARDLAFCQSVKKDGDLCGAWVNKKKTHFCEFHSNEAVRKQRATR 541
                 99*****************************************998 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.2e-06     0.019       1      72 [.     399     487 ..     399     491 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.2e-06
                      EEEEEEEEEEE............EEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEE.EEEEEC.TTS.....SEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsis............drsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvt.Grvkrr.pgg.....elelkvee 72 
                      V++ + v ++s            + + gk++ ++l+D + ++ ++lf+   ++ + +l+eG+vv +    +    p g      ++l++++
       CCE27320.1 399 VVIFAIVARKSeprahkpstgskQEDRGKYMVMTLTDLEFELDLFLFN-TGFARFWKLTEGTVVAILnPNIMPPpP-GrqdtgRFSLVINS 487
                      566677777777777777777778899*********************.***************998666666641.22333456666665 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.4   7.8e-06     0.035      35      91 ..      61     118 ..      45     130 .. 0.73
   2 ?   -2.1   0.2      0.85   3.8e+03      66      82 ..     238     254 ..     235     269 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.8e-06
        FlxA  35 elses.deltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekeeksksk 91 
                  l  + +++++ee +  ++++q ++q +qa ++ ++ q+a+ + ++ ++  +e+++++
  CCE27320.1  61 HLPHDdEDEDEEEGEDDEETLQLKLQEIQARLRLKKLQNAKARGQATAQRSSETESKS 118
                 566673566667777999************9988777777665555555555444433 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.85
        FlxA  66 aqlqqqqaekaqekqqs 82 
                 a++q+ ++ +++ek q+
  CCE27320.1 238 ARMQEAERTEKKEKIQR 254
                 55665555555555444 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   5.4   2.8e-05      0.12     131     181 ..      56     114 ..      26     122 .. 0.67
   2 ?   -0.1   0.3      0.14   6.4e+02      91     121 ..     241     272 ..     205     342 .. 0.65
   3 ?   -0.0   0.1      0.13     6e+02      49      70 ..     612     633 ..     580     667 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.8e-05
                 -.......----------------------------------------.---------- CS
  Cwf_Cwc_15 131 d.......dsdsdsdddddedetaeLlrELekikreraeekerkerek.aeeeekeree 181
                 +       ++d+d+d+++ ed+++ L+  L+ i++    +k ++++ + +++++++ e+
  CCE27320.1  56 NaalihlpHDDEDEDEEEGEDDEETLQLKLQEIQARLRLKKLQNAKARgQATAQRSSET 114
                 2345555578899999999**************97644444444433303344444443 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.14
                 -------------.----..------------ CS
  Cwf_Cwc_15  91 eeeeeeakrrkee.lleeareidaddedseee 121
                 +e+e+++k++k + + ++a  id+d+ ++ ++
  CCE27320.1 241 QEAERTEKKEKIQrVRTSAFGIDQDEMERYKK 272
                 22222222222221333344777777665443 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.13
                 HHHS-HHHHHHHHHHHHHHHHH CS
  Cwf_Cwc_15  49 lekrdlraeLeeaeaeakakkr 70 
                 ++ + +++ Le++e+e++  k+
  CCE27320.1 612 ERAEFVKRSLEAKEKEHEMMKK 633
                 2223344555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1124  (0.0626917); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5810.67
//
Query:       CCE27321.1  [L=441]
Description: uncharacterized protein CPUR_00795 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-44  151.0   0.9    5.6e-44  150.1   0.1    1.8  2  RNase_H2-Ydr279  Ydr279p protein family (RNase H2 complex com
    3.2e-26   91.4   0.0    8.2e-26   90.1   0.0    1.7  2  Ydr279_N         Ydr279p protein triple barrel domain


Domain annotation for each model (and alignments):
>> RNase_H2-Ydr279  Ydr279p protein family (RNase H2 complex component) wHTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.1   0.1   6.3e-48   5.6e-44       1     159 [.     131     345 ..     131     346 .. 0.95
   2 ?   -1.6   0.1      0.31   2.8e+03      19      34 ..     358     392 ..     349     422 .. 0.55

  Alignments for each domain:
  == domain 1  score: 150.1 bits;  conditional E-value: 6.3e-48
  RNase_H2-Ydr279   1 Fllipillklkskses....krrFlsldDlldslaessedlsellklersdiprslleerlaaiCdtveegdetmYrlseekllefLlsKverl 90 
                      Fl++p+l+  k  + +    kr+Fl +dD++d+l++++++ s++l   r+d++r+l+e+r++ iCdtv++gde+m+rlse+kll+ +++K++++
       CCE27321.1 131 FLVLPALVDVKIDK-KsdekKRLFLCSDDHFDKLPQQDSHFSDML---RCDAIRTLIESRMEVICDTVDAGDEKMFRLSEKKLLTTIIEKAKQM 220
                      9*******985544.45999*************************...8999****************************************** PP

  RNase_H2-Ydr279  91 adeaglpesleekfvrkaleapllsvkre.........................................................edastsee 127
                        e glp+s+eekfv+kaleap+l  +++                                                          d ++++ 
       CCE27321.1 221 G-EGGLPPSMEEKFVTKALEAPVLLSRNVampsqpqskaedaadsghstpgkesstslttpvtesdssleshastaatsfvdeadgVDIASAAL 313
                      8.888******************887666*********************************************************999999** PP

  RNase_H2-Ydr279 128 dapeeilkllrlryAidllcssYlppslsekL 159
                      +a+++++ l+rlr+A+d+lcs+Y+p++++e L
       CCE27321.1 314 QASPDVIALQRLRVAFDFLCSRYIPSAAAELL 345
                      *************************9998877 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.31
  RNase_H2-Ydr279  19 rFlsldDlldslaes...................s 34 
                       F +l+ ++ slae+                   +
       CCE27321.1 358 DFAPLEKYMASLAERraeavaassvanysskrprD 392
                      56667777777766544444433333333333332 PP

>> Ydr279_N  Ydr279p protein triple barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   9.1e-30   8.2e-26       1      79 []      42     128 ..      42     128 .. 0.97
   2 ?   -3.6   0.0       1.6   1.5e+04      22      32 ..     147     157 ..     145     167 .. 0.72

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 9.1e-30
    Ydr279_N   1 iLPkdasssearivtLphPrtgsksryllcpestgqlyEltkisapkstprSwliepetd...........rtkgyVlkdakllvatpiD 79 
                 iLPk a +sear+vtLphPr+g++sryl+cp+ +g +yE+tk+sapk++p+Swliep+             +   +V++++ ++vat iD
  CCE27321.1  42 ILPKAA-TSEARVVTLPHPRSGRPSRYLFCPK-SG-IYEFTKFSAPKHAPKSWLIEPRPGsdenvldgekgPPRTEVISNGAMYVATRID 128
                 8*****.99**********************7.88.********************98889***************************99 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.6
    Ydr279_N  22 gsksryllcpe 32 
                  +k+r++lc++
  CCE27321.1 147 DEKKRLFLCSD 157
                 57899999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1276  (0.0711696); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3341.88
//
Query:       CCE27322.1  [L=231]
Description: uncharacterized protein CPUR_00796 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-28   97.7   0.2    3.6e-28   97.1   0.2    1.3  1  DASH_Duo1  DASH complex subunit Duo1
  ------ inclusion threshold ------
       0.18   11.0   3.1       0.24   10.6   3.1    1.1  1  DUF1682    Protein of unknown function (DUF1682)


Domain annotation for each model (and alignments):
>> DASH_Duo1  DASH complex subunit Duo1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.2   4.1e-32   3.6e-28       1      73 [.      52     124 ..      52     125 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 4.1e-32
   DASH_Duo1   1 aLekEleqLrkinevienviesLkkaksniervketvestntLLdkWirIlsqtehtqrllldpeWkgasade 73 
                 aL++Ele +r++ne ie++ ++L+++ +ni+ v++tv ++++LL++W+rIlsqteh+qrl+l+p Wkg s+d+
  CCE27322.1  52 ALRRELEGVRSVNESIEGLLDTLNRTGGNIQVVAQTVANASSLLNTWTRILSQTEHNQRLILNPGWKGLSEDL 124
                 69********************************************************************996 PP

>> DUF1682  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.1   2.7e-05      0.24     232     300 ..      89     159 ..      74     168 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.7e-05
     DUF1682 232 eelspllklvlrliDkla..kraklrpevlkklkktReevekklkkeaeeekaEeaqekkeeekkkereek 300
                 +++s+ll+   r+  + +  +r+ l+p  +  ++   e+++++l+k+ ++e++ + +e+++ee +++ree+
  CCE27322.1  89 ANASSLLNTWTRILSQTEhnQRLILNPGWKGLSEDLAEQEAEALEKQRAAERKAAEEERRREELRRRREEE 159
                 55555555555555555555567777777777777778888888888888887666666666666655553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1455  (0.0811534); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1694.49
//
Query:       CCE27323.1  [L=424]
Description: uncharacterized protein CPUR_00797 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3162.40
//
Query:       CCE27324.1  [L=778]
Description: related to pig tubulin-tyrosine ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-54  184.3   0.0    4.6e-54  183.5   0.0    1.2  1  TTL              Tubulin-tyrosine ligase family
    3.6e-50  170.4   0.0      7e-50  169.5   0.0    1.5  1  SurE             Survival protein SurE
    9.3e-05   21.8   0.0    0.00027   20.3   0.0    1.7  2  ATPgrasp_YheCD   YheC/D like ATP-grasp
  ------ inclusion threshold ------
       0.22   11.1   0.0       0.39   10.2   0.0    1.3  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus


Domain annotation for each model (and alignments):
>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.5   0.0     1e-57   4.6e-54      11     282 ..     425     743 ..     417     752 .. 0.89

  Alignments for each domain:
  == domain 1  score: 183.5 bits;  conditional E-value: 1e-57
                 -SSS--EEEE--------------------....-------TTHHHHHHHTTTS--S-....................B----SS---XX------BSS CS
         TTL  11 lnhfpnsseitrkdllvknlkrtkkklekk..lkflprtfvlpadlaefveeaekees....................ntwIvKpsasarGkgirvfnk 87 
                 +n +     + rk +l   +++   k+ ++  + +++r+ + + d+aef+++a  e+                     ++wI+Kp++s+rG+gir+f++
  CCE27324.1 425 INSYMIRKALIRKHYLSTTVDHWVAKNPASplKTHVKRSESFEVDYAEFLDDALVEAFdlresldrnaalseeeasqrQWWILKPGMSDRGQGIRLFST 523
                 566666666667777777777766666666788888888888888888888888777777888888888888888899********************* PP

                 THHHHHH......................................HH..SSS-EEEEB--SSB--BTT.EEEEEEEEEEE-..TT-XXXXXXXXXXXXX CS
         TTL  88 ledikki......................................vsqsqkeplvvqkYierPLLidg.rKFDlRlyvlvtsvnpLrvYvYkegllRfa 147
                 +e++++i                                         s  +++v+q Yi+ PLL+++ rKF++R yvl+t+   L+v vYk +l++fa
  CCE27324.1 524 MEELQDIfdgweadrpdsddeeddaidherddqpqttpqssggdyITTSHLRHFVAQPYIHPPLLLAEkRKFHIRTYVLCTG--SLTVHVYKHMLALFA 620
                 ********************************************98889*****************998*************..*************** PP

                 XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX CS
         TTL 148 svkYspsvsdlddlevHLTNysiqkkskslneesnekkgkkwslqeleky.leevrkeeiweeiesiiiktilaaeveasrlnvqrlkncfelyGvDil 245
                 +++Y    ++++d e +LTN+++q+              ++ s+q++++  l++ +  +++++i++++ ++++aa ++a++ ++q l+n+ e++G D++
  CCE27324.1 621 AKPYAAPWENAHDPESFLTNTCLQES------------PHEDSVQRFWSLpLPQDQLCRVFDQICRVTGEVFEAA-ARAMPVHFQTLPNALEVFGLDFM 706
                 **************************............788899999986366689999****************.*********************** PP

                 XXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX CS
         TTL 246 idenlkpwLlEvNasPdlksttkldaelkeeliddvl 282
                 +d   + wLlEvNa+Pd+k+t+   ++++e   + v+
  CCE27324.1 707 VDASGETWLLEVNAFPDFKQTGGGLSDVVEGFWRGVM 743
                 *********************9888888777666555 PP

>> SurE  Survival protein SurE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.5   0.0   1.6e-53     7e-50       1     194 [.       3     223 ..       3     224 .. 0.86

  Alignments for each domain:
  == domain 1  score: 169.5 bits;  conditional E-value: 1.6e-53
                 EEEE-SS-TT....-HHHHHHHHHHTTTTSEEEEEEESSS-TTCTTS--SSSEE..............EEEEEECS.............TTTCEEEE.S CS
        SurE   1 iLltNDDGie....apgiralvealaaaghevvvvaPdserSgigkaltleepl..............rveseeee.............eeeeeyav.s 67 
                 iL+tNDDG++    +p+i+ lv++l++agh v+v++P+++rS+igka+ + ++l                     +               ++e+++ +
  CCE27324.1   3 ILVTNDDGPPsphsSPYIHCLVKHLRDAGHVVSVCVPHTQRSWIGKAHMIGQTLkplyftpsanvhgpD------TegsthhlptttpaLVDDEWVLiD 95 
                 8*********999999********************************888999777776666555441......04555556666666888999999* PP

                 S-HHHHHHHHHHTTTTTS.S.SEEEEEEEES---GGGG.GG-HHHHHHHHHHHTTSEEEEEEEESSSSS-SSS---HHHHHHHHHHHHTTETTS-.... CS
        SurE  68 GtPadcvklaleellkekkp.dlVvSGiNhGaNlgtdv.lySGTvgAaleaalegipaiAvSlaskkeeekkeedtfeaaakvaaklvekliekll.le 163
                 GtPa+cv+++l + +++k p dlVvSG+N+G+N+++ + l+SGT+gAaleaa++  ++iA+S+a++++++  +   +eaa ++ ++++e l ++   + 
  CCE27324.1  96 GTPASCVQIGLYHYFQHKGPiDLVVSGPNYGRNTTSVFaLSSGTLGAALEAAVCRRKSIALSFAFFTRQH--DPVIIEAACRHSVRVLEALYKQWPtDG 192
                 ***************999777*******************************************995444..667799*99999999998877766899 PP

                 SS-EEEEEEESS.GCG-SEEEE-B--CCSCE CS
        SurE 164 kvellnvNvPeleeeeikgvkvtrlgrrrys 194
                 +++l++vNvP +e  e +++ ++++++++++
  CCE27324.1 193 SADLYSVNVPLVEGVEDHKTLWSDMLQNYWK 223
                 9*********77666656677******9997 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.73   3.3e+03      52      69 ..     506     523 ..     499     601 .. 0.49
   2 !   20.3   0.0     6e-08   0.00027     188     229 ..     681     723 ..     661     729 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.73
  ATPgrasp_YheCD  52 ylKpanGskGkgilriek 69 
                     +lKp  + +G+gi   + 
      CCE27324.1 506 ILKPGMSDRGQGIRLFST 523
                     567777777777654443 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 6e-08
  ATPgrasp_YheCD 188 elalelaealeesfgr.lgElGlDlgidkegkvWllEvNskpg 229
                     e+a +++ +  +++++ l  +GlD+++d +g+ WllEvN+ p 
      CCE27324.1 681 EAAARAMPVHFQTLPNaLEVFGLDFMVDASGETWLLEVNAFPD 723
                     444444444445666668889******************9886 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   8.7e-05      0.39     157     179 ..     703     725 ..     681     728 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 8.7e-05
                      EEEEEETTTEEEEEEEESS---S CS
  Dala_Dala_lig_C 157 vDfflteegeivlnEvNtlPGfT 179
                      +Df+++++ge +l EvN  P f 
       CCE27324.1 703 LDFMVDASGETWLLEVNAFPDFK 725
                      7*******************885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 5730.63
//
Query:       CCE27325.1  [L=257]
Description: uncharacterized protein CPUR_00799 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0066   17.1   0.2      0.012   16.2   0.2    1.4  1  FAR1      FAR1 DNA-binding domain


Domain annotation for each model (and alignments):
>> FAR1  FAR1 DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2     7e-07     0.012       2      68 ..     102     167 ..     101     193 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7e-07
        FAR1   2 fYkeYakrvGFsvrvkksr..rsrkdgeiirrkfvCskeGfkkekkktkeakrerastrtgCkAmlvvk 68 
                 + +++a  +GF v+++k +  + +++g++ r  f C   G k++ +++  a + r++ +t+Ck ++   
  CCE27325.1 102 YLHDFAVPLGFDVARSKWYgrKNESTGKMSRLFFRCC-RGRKQDGRRK--ADSWRHTIKTDCKWKVAAV 167
                 56789********999875114445665555666665.5776666655..8999*********887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2025.84
//
Query:       CCE27326.1  [L=1404]
Description: probable calcium P-type ATPase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-43  146.2   3.4    8.1e-43  146.2   3.4    2.6  3  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    2.6e-32  111.8   0.4    2.6e-32  111.8   0.4    2.5  3  E1-E2_ATPase     E1-E2 ATPase
      6e-22   77.5   0.0    1.1e-21   76.7   0.0    1.5  1  Cation_ATPase    Cation transport ATPase (P-type)
    8.8e-20   71.9   0.1    2.4e-19   70.5   0.1    1.8  1  Hydrolase        haloacid dehalogenase-like hydrolase
    8.6e-07   28.6   0.1    1.4e-05   24.6   0.0    2.6  2  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    1.8e-05   24.7   0.6    4.6e-05   23.3   0.5    1.7  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.048   14.1   0.0      0.089   13.2   0.0    1.4  1  HAD              haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.28   7.3e+02     115     175 ..     300     362 ..     293     367 .. 0.47
   2 ?   -3.1   0.3       2.1   5.3e+03     151     151 ..     538     538 ..     481     573 .. 0.52
   3 !  146.2   3.4   3.1e-46   8.1e-43       2     182 .]    1038    1223 ..    1037    1223 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.28
  Cation_ATPase_C 115 slfkfsglfsnkllllaillslllqvlivyvpglnavfgtapl......sleewlialllalvvllv 175
                      sl++++ ++ n  +l+ + +++++ +++ ++    + fgt+         + e + +++  ++v++v
       CCE27326.1 300 SLLQLMWITYNDKVLILLSIAAVISLAVGLY----QTFGTEHAagepkvEWVEGVAIIAAIAIVVIV 362
                      5566555665544444444444444444444....45555533222111444444444444444444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.1
  Cation_ATPase_C 151 v 151
                      +
       CCE27326.1 538 L 538
                      1 PP

  == domain 3  score: 146.2 bits;  conditional E-value: 3.1e-46
  Cation_ATPase_C    2 lplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllf.......gisekenkls 86  
                       ++l+a+q+Lw+nL++D+l+alaLa++pp++++++r+P++k  ++is  m+++il+q+l+q+++t+l+++  ++++       +i ++     
       CCE27326.1 1038 SVLTAVQLLWVNLIMDTLAALALATDPPQDSVLDRKPEPKGSSIISVTMWKMILGQALYQLAITFLLYYGSPKGIlplpgpnDIPDPG---- 1125
                       68***********************************************************************776666555555555.... PP

  Cation_ATPase_C   87 snyaqtmaFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtapl......sleewlialllalvv 172 
                         + +t++F+t+v++qifn +n r+++++++ f+gl +n++++++ +l+++ q+li++v  ++a+f++a+       +++ w+ial+l++++
       CCE27326.1 1126 --QINTLVFNTFVWMQIFNQWNNRRLDNKFNIFEGLSKNWFFIGISALMCGGQILIIFV--GGAAFQIADApaesdrNGTLWAIALVLGFIS 1213
                       ..59***********************************99999999************..9*******88889999*************** PP

  Cation_ATPase_C  173 llvdelvKll 182 
                       ++v+ +++l+
       CCE27326.1 1214 IPVGVIIRLI 1223
                       ***9999986 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.9       3.1   7.8e+03     123     157 ..     317     361 ..     311     362 .. 0.57
   2 !  111.8   0.4     1e-35   2.6e-32       3     180 ..     382     593 ..     380     594 .. 0.91
   3 ?   -2.6   0.6       1.3   3.4e+03     115     155 ..    1008    1046 ..     999    1052 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.1
                   HHHHHHHHHHHHHS-STTTSSTT..........HHHHHHHHHHHH CS
  E1-E2_ATPase 123 vpvvlliallvflialllgksla..........eallralallva 157
                     ++ +i+l+v l++ + ++ +a           a++ a+a++v+
    CCE27326.1 317 LSIAAVISLAVGLYQTFGTEHAAgepkvewvegVAIIAAIAIVVI 361
                   444555555555555555555546777777766666667776665 PP

  == domain 2  score: 111.8 bits;  conditional E-value: 1e-35
                   S--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-.................G-TTEE-TT-EEEE-EE CS
  E1-E2_ATPase   3 lpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek.................ekgdmvfsGtvvvsgea 81 
                   +++ +kv+r+g+++e  + ++ +GD+v l++gd vp+Dg++++g + ++des+ TGEs  ++k                 +    + sG+ +++g  
    CCE27326.1 382 QDRNVKVVRSGKTMELSVFDILVGDVVHLEPGDLVPVDGVLIDGFNlKCDESQTTGESDIIRKrpsdevfaaienheslkKMDPFIQSGARIMEGVG 478
                   67899**********************************************************9999999999999888666667889999999*** PP

                   EEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-ST....TTSSTT.................HHHHHHHHHHHH CS
  E1-E2_ATPase  82 kavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvfliall....lgksla.................eallralallva 157
                   ++ +t tg  + +gk   +++e  ++ tplq kl+ ++ ++++++ +++ll+fl++++    +                      e+++ +++++v+
    CCE27326.1 479 TYMATSTGIFSSYGKTLMALNED-PEMTPLQAKLNVIATYIAKLGGAAGLLLFLVLFIeflvK----LpklpasvtpaqkgqsflEIFIVVVTIIVV 570
                   **********************9.*******************************99855440....344556666777777777999********* PP

                   HS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 158 aiPcaLplavplalalgarrlak 180
                   a+P++Lplav+lala++++r+ +
    CCE27326.1 571 AVPEGLPLAVTLALAFATTRMLR 593
                   ********************976 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.3
                    HHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHH CS
  E1-E2_ATPase  115 ldklgkvlvpvvlliallvflialllgkslaeallralall 155 
                    ++++ ++  +v +++++l+f++a++   +   ++l a++ll
    CCE27326.1 1008 VKRFLQFQLTVNITAVVLTFVTAVSSDSQ--SSVLTAVQLL 1046
                    44555555555555555555555443333..6777777776 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.0   4.4e-25   1.1e-21       1      90 [.     685     774 ..     685     775 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 4.4e-25
  Cation_ATPase   1 ilcNsaafsensekdevkllGnktEsALlvlaekl..gldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCth 90 
                    i++Ns+af e + ++e++++G+ktEsALl +a++   +  ++e re+ +k+q ipF+s rK+m++v++l p+++ rl+vKGA+ei+l++Ct+
     CCE27326.1 685 IALNSTAF-EGEVDGEKTFIGSKTESALLLFARAHlaMGPVSEERENVTKLQLIPFDSGRKCMGIVIQL-PHGGARLLVKGASEILLAKCTQ 774
                    689*****.************************999999*****************************9.8*******************96 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.1   9.3e-23   2.4e-19       2     210 .]     611     965 ..     610     965 .. 0.75

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 9.3e-23
                 SEEEEESBTTTBCHHHHHHHHHHHH.........CHHHHHHHHHH..................HHCHHHHHHHHHHHHH............HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxx..................xxxxxxxxxxxxxxxx............xxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsa.........alalaaaletg..................sehpigkalvaaakar............sgaltgfa 61 
                 +t++ Dk+GTLt+ +++v+  +v +                   +                  s+  ++  l a  k++            +g+++g  
  CCE27326.1 611 TTICSDKTGTLTQNKMQVVAGTVGLdhrfgntrqG---------SpesdtednegsiddvpeiSPAELATSLSAPVKDLllksialnstafEGEVDGEK 700
                 599**********************5555544430.........2445555556677778999999999999999999988733333333333333333 PP

                 HETTTE............................HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH............................. CS
                 xxxxxx............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................. RF
   Hydrolase  62 tfigrg............................ayaigkpewltaldippdlgaaigsaqsqgrtvall............................. 103
                 tfig                              +                                  l                             
  CCE27326.1 701 TFIGSKtesalllfarahlamgpvseerenvtklQ----------------------------------Lipfdsgrkcmgiviqlphggarllvkgas 765
                 34444455555555555333333333333333330..................................255555555555566666666666666777 PP

                 ..............................................................................TTHHHHHHHHHHTHHBHTTHH CS
                 ..............................................................................xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 ..............................................................................qaralavftiadplkvkpeaa 124
                                                                                               +    +++ i+dp  +++++ 
  CCE27326.1 766 eillakctqklndpslddavapfetrdpqtisrlietyatrslrtigicykdfevwppktarrgegggndvefddvfhDMIFIGLVGIQDP--LREGVF 862
                 777777777777777777777777777777777****************************************9999999999********..****** PP

                 HHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.............GGGESEEEEHHCES.......STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 125 eavasLkaagievvlltgdnpetaeraanqlG.............ddyfdaviasdiet.......vakpspegkvaaireLqgkpeevamVGDgvnDa 203
                 + v+  ++ag+ v ++tgdn  ta+++a+++G             +    +   ++ e         a  spe+k+ ++++L+ k+e va+ GDg nDa
  CCE27326.1 863 DSVKLCQKAGVVVRMVTGDNVLTAQAIAKECGilqpdsvvmegprF---RNLSKREQERiipklhvLARSSPEDKRILVKRLKDKGETVAVTGDGTNDA 958
                 ***********************************99999995552...444444444454449999999***************************** PP

                 HHHHHTT CS
                 xxxxxxx RF
   Hydrolase 204 aalaaAg 210
                 +al++A+
  CCE27326.1 959 PALKMAD 965
                 *****98 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.17   4.3e+02       5      26 ..     220     241 ..     216     244 .. 0.81
   2 !   24.6   0.0   5.7e-09   1.4e-05      24      69 .]     279     324 ..     277     324 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.17
  Cation_ATPase_N   5 sleevlekLetdlenGLtqaea 26 
                      +l ++ + L +++++GL+q+e 
       CCE27326.1 220 GLRGLEKGLRSNRKTGLSQDET 241
                      66777888999********996 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 5.7e-09
  Cation_ATPase_N  24 aeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69 
                      +++a+r +++  N+l+ kk ksl+++ +  +++ ++ilL +aa++s
       CCE27326.1 279 DAFADRYRVFRDNRLPVKKGKSLLQLMWITYNDKVLILLSIAAVIS 324
                      67899***************************************98 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.9   4.9e+03      22      54 ..     863     895 ..     858     901 .. 0.84
   2 !   23.3   0.5   1.8e-08   4.6e-05     195     255 .]     937     998 ..     935     998 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.9
                  HHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCC CS
  Hydrolase_3  22 eaikklkekgikvviATGRslravlpvleelgl 54 
                  + +k ++++g+ v   TG ++ +++ +++e g+
   CCE27326.1 863 DSVKLCQKAGVVVRMVTGDNVLTAQAIAKECGI 895
                  567889999999999999999999999998876 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 1.8e-08
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGG.THHHHHH CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnne.dGVakal 255
                  l+k+l+ + e v++ GDg ND + L++a++g+ mg a  ev k A+ ++   ++  +++kal
   CCE27326.1 937 LVKRLKDKGETVAVTGDGTNDAPALKMADVGFSMGIAGTEVAKEASAIILMDDNfASIVKAL 998
                  6788888999***************************************9999999999986 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.5e-05     0.089      86     188 .]     857     962 ..     835     962 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.5e-05
         HAD  86 ldpgalellaahraaGdrvvvvSgglrplvepllaelg...adevlatelevdd.......rltgelglegkpvrgegkvaalre......wlaaegeg 168
                 l++g+ + ++ +++aG+ v +v+g +   ++++++e g   +d v+ +  ++++       r      +++k       +++l++       +  +  +
  CCE27326.1 857 LREGVFDSVKLCQKAGVVVRMVTGDNVLTAQAIAKECGilqPDSVVMEGPRFRNlskreqeR------IIPK-------LHVLARsspedkRILVKRLK 942
                 45899999**999*************************999999999977777554322232......2222.......33333333333344444466 PP

         HAD 169 idleevvayGDspsDlpllr 188
                 ++ e+v + GD+ +D p+l+
  CCE27326.1 943 DKGETVAVTGDGTNDAPALK 962
                 666655555********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.44
# Mc/sec: 9511.00
//
Query:       CCE27327.1  [L=597]
Description: related to NAD-dependent histone deacetylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-57  192.4   0.0      1e-56  191.6   0.0    1.4  1  SIR2             Sir2 family
     0.0018   18.1   0.0     0.0029   17.4   0.0    1.4  1  DUF592           Protein of unknown function (DUF592)
  ------ inclusion threshold ------
      0.083   12.6   0.3        1.1    9.0   0.0    2.5  3  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai
        0.9    8.3   3.3        1.6    7.5   3.3    1.3  1  SWIRM-assoc_2    SWIRM-associated domain at the N-terminal
        4.4    7.9   7.2        2.9    8.5   2.0    2.4  2  POX              Associated with HOX


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   0.0   2.9e-60     1e-56       1     177 []     224     476 ..     224     476 .. 0.98

  Alignments for each domain:
  == domain 1  score: 191.6 bits;  conditional E-value: 2.9e-60
                 -GGGGGGGT---SSS.TTSHHHHSCHHHHSSHHHHHHHHHHHHH..HHHHHHHHHHCCTSS--HHHHHHHHHHHTTCEEEEEES-SSSHHHHTT-S..S CS
        SIR2   1 GAGiStesGipdfRs.keGlyaklakeelaspealfskkllvee..vfyniarellaeeaepnaaHkalkklekkgkllrliTQNiDgLekkaGsk..k 94 
                 GAGiSt++GipdfRs  +Gly+kl++ +l +p+++f++++++++  +fy+ia+++++ +  ++++H+++++l ++gkll+++ QNiD+Le kaG+   k
  CCE27327.1 224 GAGISTSLGIPDFRSkGTGLYSKLEHLGLGDPQEVFDINVFRQDpsIFYSIAKDIIPATGRYTPTHQFIAMLHQRGKLLTNYSQNIDNLEVKAGLPksK 322
                 9**************889****************************************************************************9878* PP

                 EEETTEEEEEEEETTTSBEEECCGGHCHHHCCTT.B-TTTCC......................................................... CS
        SIR2  95 vvelHGslakakcvkcekkldkeelqeeieaekvpecekcgk......................................................... 136
                 ++++HGs+ +a+cv+c++++++e+++ ei+a ++p+c++c +                                                         
  CCE27327.1 323 LIQCHGSFGTATCVQCRYQTNGEAIFPEIKAGHIPRCPRCIQsldsphdsnkkrkrssagagpsnrnsksnsnsnskrsrrrgrhpssqaqrwcddtsd 421
                 *************************************************************************************************** PP

                 ............BEEEEE--CTSB-SHHHHHHHH..HHHH-SEEEEES--STSTT CS
        SIR2 137 ............llkpdvvfFGealpdklkklie..kveeadlllviGtSlkVap 177
                             ++kpd++fFGealpd++++ ++  + +++dl++viGtSlkV p
  CCE27327.1 422 sdddlpepptagVMKPDITFFGEALPDEFSERLTkhDRDKVDLVIVIGTSLKVSP 476
                 **************************8887765547899**************98 PP

>> DUF592  Protein of unknown function (DUF592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     8e-07    0.0029     114     153 .]     184     223 ..     134     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8e-07
      DUF592 114 kdLqkainkvlstrlrlsnfstidhfvdklkkakkilVlt 153
                   L  ai++ ls r++ls ++t+d+ v  l + + i+V+t
  CCE27327.1 184 DLLSLAISRELSKREKLSAYNTVDDAVRLLTQCSNIIVIT 223
                 57889**********************************8 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.11   4.1e+02       1      25 [.     206     230 ..     206     237 .. 0.89
   2 ?    9.0   0.0    0.0003       1.1      77     137 .]     461     518 ..     442     518 .. 0.86
   3 ?   -3.5   0.0       2.3   8.1e+03      18      39 ..     543     564 ..     539     568 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.11
                   HHHHHHHHHH-SSEEEEE-CHHCHT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvars 25 
                   +++a+ ll + ++++++ G g+++s
    CCE27327.1 206 VDDAVRLLTQCSNIIVITGAGISTS 230
                   689******************9976 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0003
                   H-SEEEEES-SSSTCCCTTTTTTTTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  77 eaDlvlalGarfddirttgsepefapeakiihididpaeigknyqvdlaivgdvketleaL 137
                   + Dlv+++G+ ++  + +++   f p+  + +i ++++ + ++   d+ ++gd++ ++ +L
    CCE27327.1 461 KVDLVIVIGTSLKV-SPVSEIVSFVPQ-HVPQIYVSREPVTHVE-FDIDLLGDCDVVVAEL 518
                   68**********88.777778899999.7889999999999876.89******99998876 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.3
                   E-CHHCHTTGHHHHHHHHHHHT CS
  TPP_enzyme_M  18 vGggvarsgaseelrelaeklg 39 
                   +G g+ + ++ e+++ +a ++ 
    CCE27327.1 543 AGEGCVSRHVFEAVETVATATT 564
                   8999999999999999998876 PP

>> SWIRM-assoc_2  SWIRM-associated domain at the N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.3   0.00044       1.6     289     352 ..     372     438 ..     361     466 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00044
  SWIRM-assoc_2 289 kskkrkrsPsP..pskkeskkksgrkga.asarrkkkkeeeeeeedltkdmedptpepnieevelpk 352
                    ++kkrkrs     ps+ +sk +s+ +++ +++r ++ +++ +   d t d +d  pep    v  p+
     CCE27327.1 372 SNKKRKRSSAGagPSNRNSKSNSNSNSKrSRRRGRHPSSQAQRWCDDTSDSDDDLPEPPTAGVMKPD 438
                    46888888654113333344444333333555666677777788899**********9988887776 PP

>> POX  Associated with HOX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.0   0.00081       2.9       4      62 ..      68     125 ..      67     143 .. 0.46
   2 ?    1.3   0.2      0.13   4.6e+02      41      56 ..     384     399 ..     340     430 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00081
         POX   4 nSkYlkaaqelLdevvsvga..kksksssaskkkkkkakkskeseegegsssssssasssa 62 
                 +S Y  + +elL++ ++v +   +s+sss s+++   ++++++s+++++s ss ss+ss +
  CCE27327.1  68 ESLYEDVLEELLKDTINVDEtaAASSSSSLSSST---SASASASASSSSSLSSPSSSSSPD 125
                 57899999**********7333222222222222...222222222222222222222222 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.13
         POX  41 kskeseegegssssss 56 
                 + ++ +++++s+s+s+
  CCE27327.1 384 GPSNRNSKSNSNSNSK 399
                 1111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1190  (0.0663729); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 3946.32
//
Query:       CCE27328.1  [L=972]
Description: related to bovine rhodopsin kinase and to YGR052w [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-08   33.4   0.0    3.1e-07   30.0   0.0    2.3  1  Pkinase      Protein kinase domain
    0.00034   20.0   0.0      0.081   12.2   0.0    2.3  2  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.056   13.1   0.1       0.14   11.8   0.1    1.6  1  DCB          Dimerisation and cyclophilin-binding domain of M


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   5.2e-11   3.1e-07      43     264 .]      79     340 ..      70     340 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 5.2e-11
                 HHHHHHHHHHHHHSCTTB--EEEEEEE...............SSEEEEEEE--TTEBHHHHHH..........................HHSS--HHHH CS
     Pkinase  43 kkvlrEikilkklkhpnivrlyevfee...............kdelylvleyveggeladlle..........................rkgslseeea 100
                 +++ +E + l+kl+hp i++l+e +ee               +              l +ll+                          r+  ++e e+
  CCE27328.1  79 ERLKKEASSLAKLRHPSILELVEPVEEtrggglqfatepvsaS--------------LSSLLQekddqersggrasrfvtedadgvrrrRELEIDELEI 163
                 67899*********************98866666665555430..............4444443333333232222222233333433344447777** PP

                 HHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...................BCTTTSCGGGS-HHHHTTSCBSHHHH CS
     Pkinase 101 kkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelesssk...................ltsfvgtseYlAPEvlkeneyskkvD 179
                 +k + q+ ++le+lH ++g++H  l p     d   + K++ + +++ ++ s+k                    +      ++ +P  + +++ ++++D
  CCE27328.1 164 QKGLLQLSQALEFLHeNAGLVHGNLTP-----D-ASDWKLSGLSFCTPADGSTKptsiqgislgevlnvdprlPKFGQLNLDFTSPDFVMDSNLTSAAD 256
                 ***************6667***76555.....5.7889999999999999999999999999999999999988888999******************* PP

                 HHHHHHHHHHHHHS..S-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS........-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 180 vWslGvilyelltg..kppfsgekgkekvekeldqlekilkilgetkeklpeasei........seeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++slG++ + l++   k p++ + + +     +++l+++  ++  +++                +e + ++l +l+++ p +R++a+e  q++y+
  CCE27328.1 257 MFSLGLLSIALYNSphKSPLECHGSIS----SYKRLFSSSSTVPSSSN-------GflssrplpKELVHHVLPRLITRRPAQRMSAREFQQSEYF 340
                 *********998762244555333333....33332222333223233.......1233334446667899*********************998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.3e-05     0.081      45     130 ..      78     189 ..      71     192 .. 0.87
   2 !    5.3   0.0    0.0017        10     166     203 ..     235     272 ..     225     336 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
                  HHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHT........................CTTTSBHHHHHHHHHHHHHHH CS
  Pkinase_Tyr  45 keelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkk........................ekekltlkdllsfalqvAkGm 116
                   e+l +ea+ + kl+hp i++l+  +   +++ l + te v+  +L++ L++k                        ++ +++  ++ +  lq+++++
   CCE27328.1  78 VERLKKEASSLAKLRHPSILELVEPVEetRGGGLQFATEPVS-ASLSSLLQEKddqersggrasrfvtedadgvrrrRELEIDELEIQKGLLQLSQAL 174
                  678999*******************99556666999999987.59******************************6655666666778999******* PP

                  HHHHHTT.EEEST-S CS
  Pkinase_Tyr 117 eyLeskk.lvHrdla 130
                  e+L+++  lvH +l+
   CCE27328.1 175 EFLHENAgLVHGNLT 189
                  ***9876599*9985 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0017
                  TSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSS CS
  Pkinase_Tyr 166 klpvkWmapEslkekkftsksDvWsfGvllwEiftlge 203
                  +l++ +++p  ++++++ts++D++s G l + +++  +
   CCE27328.1 235 QLNLDFTSPDFVMDSNLTSAADMFSLGLLSIALYNSPH 272
                  78899**********************99888877554 PP

>> DCB  Dimerisation and cyclophilin-binding domain of Mon2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.3e-05      0.14      49     140 ..     564     655 ..     545     658 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.3e-05
         DCB  49 eeqslaea.seeilkPlllacetknpkivqiaLgslqrLisheviseeaiskiietlwkllelgveielkvLqtllllvttss.vvhgdtlaka 140
                 + ++l +  ++e + Pl+   +tk+p ++  aL+ l r++   +  ++ + +i+ +lw++      ++lk  ++++ l+++ s +v++++++k+
  CCE27328.1 564 SSSALDKYtMQEKIVPLVRVIKTKEPAVMLAALNVL-RIVGEVADADFVAMEILPILWSMSLG-PLLDLKQFKMFMELIKSLSrRVEDEQVKKL 655
                 244554433578899******************987.6777777778899********96555.5569***************9*****99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 6866.80
//
Query:       CCE27329.1  [L=411]
Description: probable branched-chain-amino-acid transaminase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-34  120.2   0.0    1.6e-34  119.8   0.0    1.2  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   0.0   8.7e-39   1.6e-34       2     223 .]     114     366 ..     113     366 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.8 bits;  conditional E-value: 8.7e-39
  Aminotran_4   2 lfEtmrvy...ngei..ffldeHleRLrksaellglelpfdeeelrkileelleannsen.......grlrllvsrgggglgaatsepsvavyvsalp 87 
                  +fE+m++y   +g+i  f+ d++++RL+ksa+++ + ++f  + + +++++l++ +  +        ++lr+++++++  lg  ++  s+++yv+a+p
   CCE27329.1 114 CFEGMKAYkdkDGKIrlFRPDKNMARLNKSAARI-ALPTFEPTSFIELISKLTQLDSRFIphqrgysLYLRPTMIGTQKTLG-VGPPGSALLYVIASP 209
                  8**********9*999888************777.7********************9999****88888*********9999.*************** PP

  Aminotran_4  88 pgpeseke.....lplvtssdvrrdapsplpgaKtlnyldnvlarreakergadevl.lvdedgnvtEgstsNvfivk......ggelitPplssgiL 173
                   gp++ +      l++++++ vr+++  +  +    ny++++  +++a+ rg+++ l l+ e+ +vtE++t+N+f+v        +elit+p++++iL
   CCE27329.1 210 VGPYYPTGfkaisLEATDYA-VRAWPGGVGDKKLGANYAPCIVPQLQAASRGYQQNLwLFGEEEYVTEVGTMNMFVVIkdkstgQKELITAPIDGTIL 306
                  ***********966666666.*********************************8888****************77777****99************* PP

  Aminotran_4 174 pGitrrallelakal....gleveereitlkdle......eadeafltntlrgvlpvrsi 223
                  +G+tr+++l la+++    g++v er++t+ +l       +  eaf ++t++ v p+r+i
   CCE27329.1 307 EGVTRDSVLTLARERlvpeGWKVTERKYTMRELYeasqegRLVEAFGSGTAAIVSPIRAI 366
                  **********************************777777788**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2814.51
//
Query:       CCE27330.1  [L=119]
Description: uncharacterized protein CPUR_00804 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-11   44.3   0.0    1.8e-11   44.2   0.0    1.2  1  ESSS      ESSS subunit of NADH:ubiquinone oxidoreductase (com


Domain annotation for each model (and alignments):
>> ESSS  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0     1e-15   1.8e-11      57     100 ..      68     108 ..      13     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1e-15
        ESSS  57 fgvsivlVlgsvfvaYlpdtsiqeWArrEAerllkrREaeglpi 100
                  ++++++V++++++aY+pdtsi +WA +EA+r+l   Eaeg+ +
  CCE27330.1  68 RAFIGSMVIAGIAYAYMPDTSISTWALEEARRRL---EAEGILP 108
                 47999*****************************...****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 944.24
//
Query:       CCE27331.1  [L=1008]
Description: uncharacterized protein CPUR_00805 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-10   40.4  35.7      6e-10   39.3   7.6    3.1  3  FUSC_2    Fusaric acid resistance protein-like
    6.4e-08   32.1  16.9    1.1e-05   24.7   3.6    3.2  2  ArAE_2_N  Putative ER transporter, 6TM, N-terminal
     0.0017   18.2   0.0     0.0047   16.8   0.0    1.7  1  ArAE_2    Aromatic acid exporter family member 2
     0.0052   16.4   0.5     0.0052   16.4   0.5    2.1  2  Wzy_C     O-Antigen ligase


Domain annotation for each model (and alignments):
>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4  17.2   0.00051       2.3      13     101 ..     116     214 ..      95     242 .. 0.61
   2 !   39.3   7.6   1.3e-13     6e-10      11     126 ..     638     758 ..     621     759 .. 0.83
   3 ?    3.2   0.2      0.02        92      37      74 ..     747     787 ..     745     796 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00051
      FUSC_2  13 rgeWalitaaivlsp..tlgasltravqRilGtvlGavlallllyllpgn......lalallvfllvfliafflkrny..alafiflt.llalllysla 100
                 + +++++++++   p  t+ga    ++  i+Gt++G+ +a+l l l  ++      ++ +l++f ++f+ ++++ r +   + + +l+  +a+++++l+
  CCE27331.1 116 HHYMIVVSVILNH-ParTIGAQIEGTILTIIGTAVGLGWAVLGLLLSTSTlaasagYGGILALFFALFMLIMTWIRAFfiRVYQGVLCaGIAVIFTTLV 213
                 3333333333333.346*************************887555542112235555666666666666666666344444555536667777776 PP

      FUSC_2 101 a 101
                 +
  CCE27331.1 214 E 214
                 4 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 1.3e-13
      FUSC_2  11 lwrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgn.lalallvfll..vfliafflkrny.alafifltllalllyslaa.gsg 104
                  +   Wa+++ +++++p +g++ + ++ R    vlGa+++ + +++++g+ +++ ++ +l    +l+ + l++++ ++ + +l++++++l   a+ g +
  CCE27331.1 638 EYEVWWAVVMSWVMMQPRVGGNIQDLLTRSGVAVLGALWSGVGYAAGHGSpYVMGVFAALYmgPMLYQYSLSSHPrSGLAGCLCFTIVSLGLQAQdGAH 736
                 35778********************************************77999988777733344466777777688999999999988887776777 PP

      FUSC_2 105 npieialhRlldvliGiliall 126
                 +p  +a++R l  ++Gi++ +l
  CCE27331.1 737 SPALLATLRGLSFFVGIVVPIL 758
                 7777**************9765 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.02
      FUSC_2  37 vqRilGtvlGavlallll.yllpgn..lalallvfllvfli 74 
                 +  ++G v+ ++++++l+ +++ ++  +al  +++ +++l+
  CCE27331.1 747 LSFFVGIVVPILASWVLWpFVARHElrVALSSTMIFMSILY 787
                 56799*************55555654444444555555444 PP

>> ArAE_2_N  Putative ER transporter, 6TM, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   3.6   2.5e-09   1.1e-05      17      92 ..      88     162 ..      85     169 .. 0.93
   2 !    9.4   5.8   0.00011      0.48     138     355 ..     169     362 ..     165     421 .. 0.64

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.5e-09
    ArAE_2_N  17 KvifRswvavwvaiiLmvipptarwlGtaayLllivsvivpsGggsvivfilialllllgiclawawaviamkian 92 
                 ++++++ +a  +a +++++p +  wlG+  y++++  +++++ ++ +   i +++l ++g+ +++ wav+ + ++ 
  CCE27331.1  88 IRFLKTFLAYLIAYMMCLAPSIRDWLGRHHYMIVVSVILNHP-ARTIGAQIEGTILTIIGTAVGLGWAVLGLLLST 162
                 5789999**************************999999***.**************************9987765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00011
    ArAE_2_N 138 arvsvvyavllcvflffvgrlrakspkfalgaifgiIaadvfltyapmlPlfapgtlglallkPmgiglalkvvvsllifPttssfqvlktmlkllkll 236
                 a+   ++a++ ++f+ ++ ++ra     ++g ++  Ia+ +f+t+          +  + +  P ++g a+ + ++++i P  + +++ + + + l  +
  CCE27331.1 169 AGYGGILALFFALFMLIMTWIRAFFIRVYQGVLCAGIAV-IFTTLVETDSRTVSWSKLRDYAIPWLLGQAIALTINVVIVPDAGARALATALHESLLIM 266
                 556679999***************999***********9.565555555554566666999*********************98887766555555444 PP

    ArAE_2_N 237 kkalkfnsnflatlepsnesewlnfkklekditkirslypkleaelaflplEfsigrfsaedvkelrstlrrlissiagLvyfydlleelravilkser 335
                 +k+l       +  e+           +  ++ ++ + +  l+ +   +   ++i+rf++++v++lr  ++ +i ++ +L + +    +     + s+ 
  CCE27331.1 267 QKSL-------EPQEQ-----------TAMIRRRLAATFVDLSEACRDMRSSLTISRFQPDQVEQLRNRMQAVIRALLSLQMEVHVPDSP----SVSDD 343
                 4444.......33333...........33445555555555555555555667999******************9999998844443333....22334 PP

    ArAE_2_N 336 ssklaanghakldseieekk 355
                 +s+++    a ++s+ e + 
  CCE27331.1 344 QSEVNG-HCAGKFSASESNT 362
                 433433.3344444444444 PP

>> ArAE_2  Aromatic acid exporter family member 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     1e-06    0.0047       6     175 ..     768     938 ..     765     987 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1e-06
      ArAE_2   6 akrlvrktlaktlselgdlyckvlsfaaerlenphihikaerdqirkkile..vleklaglkgllvllkfElslkGrwpskkyarlqalvselvqllar 102
                 a+  +r  l++t+  ++ ly++v+        +  ++   e d + + +le  ++e  +++++llvl + El l+ +++   y+ l + +++  + l  
  CCE27331.1 768 ARHELRVALSSTMIFMSILYQNVVAKYVY--FRDGKDPTPE-DVVNSETLEgrLREGFVRIRQLLVLTRHELRLRAPFDPLPYSALSHACEQFFDYLIT 863
                 77789999***************998877..3455666666.6676666652267889***********************************998887 PP

      ArAE_2 103 Llvvlkrlepeewlkrllrrvglld..peliadvlavlsmasqaLktGdpLPeilpapLvkrhlellrkqlklee 175
                         +p +  ++ +   +ll+    + a vl  l+++++aL++ +  P  +p+    r   ll++ + +++
  CCE27331.1 864 VRQSALFYNPSHIRDEPIAAKQLLSyrRDAAAPVLGNLYILAGALRSQTKVPHYMPSAAAARKRLLLKTDQVEQQ 938
                 7654444449999877555555554114578899**********************9887776666665555555 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.5   1.2e-06    0.0052       2      65 ..     157     219 ..     156     351 .. 0.80
   2 ?   -1.7   0.2      0.44     2e+03      26      35 ..     747     756 ..     681     803 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.2e-06
       Wzy_C   2 alllsllalflstsRsgiigllvalivlliifykrripfllllgilvgvilliilfvlstnlet 65 
                 +llls  +l++s   +gi++l++al +l++ +++ ++  +++ g+l++ i++i + +++t   t
  CCE27331.1 157 GLLLSTSTLAASAGYGGILALFFALFMLIMTWIRAFF-IRVYQGVLCAGIAVIFTTLVETDSRT 219
                 799**********************************.66666655555555555554444333 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.44
       Wzy_C  26 livlliifyk 35 
                 l +++ i++ 
  CCE27331.1 747 LSFFVGIVVP 756
                 2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1008 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 7092.89
//
Query:       CCE27332.1  [L=1604]
Description: related to DNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-71  238.3   0.0    1.9e-70  236.8   0.0    1.8  1  Dna2             DNA replication factor Dna2
    2.2e-52  177.6   0.0    7.1e-52  175.9   0.0    1.9  2  AAA_12           AAA domain
      2e-33  116.3   5.3    1.1e-16   61.4   0.0    3.7  3  AAA_11           AAA domain
    3.4e-17   62.8   0.0    3.8e-16   59.4   0.0    2.3  2  AAA_30           AAA domain
    5.3e-13   49.5   0.0    1.7e-12   47.9   0.0    2.0  1  AAA_19           AAA domain
    1.7e-10   41.3   0.0    7.8e-09   35.8   0.0    2.6  2  Cas_Cas4         Domain of unknown function DUF83
    1.8e-06   27.9   0.6        0.2   11.4   0.1    4.0  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    8.4e-05   22.5   0.0    0.00024   21.0   0.0    1.8  1  Helicase_RecD    Helicase
    0.00089   18.9   0.2     0.0032   17.0   0.0    2.1  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
     0.0014   17.9   0.1       0.01   15.0   0.1    2.1  1  PIF1             PIF1-like helicase
     0.0029   17.3   0.1      0.006   16.2   0.1    1.5  1  SRP54            SRP54-type protein, GTPase domain
      0.003   18.0   0.2      0.017   15.5   0.0    2.3  2  AAA_16           AAA ATPase domain
     0.0038   16.6   0.1     0.0087   15.4   0.1    1.5  1  Csa1             CRISPR-associated exonuclease Csa1
     0.0095   15.8   0.1      0.048   13.6   0.1    2.1  2  MobB             Molybdopterin guanine dinucleotide synthesis
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.036   14.1   0.0    1.7  1  ResIII           Type III restriction enzyme, res subunit
      0.017   15.1   0.4      0.046   13.8   0.4    1.7  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
      0.017   15.2   0.3      0.065   13.3   0.3    1.9  1  DUF87            Helicase HerA, central domain
      0.044   13.8   1.7       0.16   11.9   0.1    2.6  2  AAA_5            AAA domain (dynein-related subfamily)
      0.071   12.6   0.2       0.16   11.5   0.2    1.5  1  AAA_7            P-loop containing dynein motor region
       0.11   12.1   0.0       0.23   11.0   0.0    1.4  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.11   12.4   0.8       0.27   11.1   0.3    1.9  2  NTPase_1         NTPase
       0.22   10.4   0.7       0.35    9.8   0.1    1.6  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 


Domain annotation for each model (and alignments):
>> Dna2  DNA replication factor Dna2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.8   0.0   2.3e-73   1.9e-70       3     203 .]     517     718 ..     515     718 .. 0.99

  Alignments for each domain:
  == domain 1  score: 236.8 bits;  conditional E-value: 2.3e-73
        Dna2   3 kseekktvvLrddWaetsvekgdiihivgkfe.eekiiidnesnllIlhPdlLvsaTsvanslsClRravLqerlkvsgesskamliGtilHelfqkal 100
                  s++++tv+Lr+ W++t+ + ++++h++g+f+ ++++i+d+++nllIlhPd L+s+T+va+s+ C+RravLq+r+k+++e+s ++++Gt+lHe+fq+al
  CCE27332.1 517 GSQATRTVHLRGAWFDTPAHSNSYVHVIGSFSvRGQCIVDDAENLLILHPDQLISSTVVADSFGCMRRAVLQDRVKATSEASPPLVYGTMLHEIFQEAL 615
                 6789*********************************************************************************************** PP

        Dna2 101 leeeldkekleelldklleknleelyalglteeeakeeikekleeiekwakkyvkksnkakakvekkkekkeklsiskvldiEEniwspkyGLKGkiDa 199
                 l++++d  +l++ +dk+++k++e+ly++++   +ake++ +k+ e++ wak +v++++ ++a+ve++++kk +++++k+ld+EE++wsp+yGLKG+iDa
  CCE27332.1 616 LKNKWDLPFLSSVIDKICDKHVEDLYTIKVGLPSAKEHLLSKMTELSYWAKSFVSSRPRTDAVVEDRNGKKANMAVTKLLDVEEHVWSPMYGLKGNIDA 714
                 *************************************************************************************************** PP

        Dna2 200 tvev 203
                 tvev
  CCE27332.1 715 TVEV 718
                 **97 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.8   4.8e+03      46     109 ..     873     940 ..     866     969 .. 0.62
   2 !  175.9   0.0   8.7e-55   7.1e-52       1     198 [.    1259    1487 ..    1259    1488 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.8
      AAA_12  46 aesvkkrele...aqealeepleplvfidv...ekseeekekkeksyiNeeEaelvvklvekllkkgsee 109
                 +e+ ++++++   +++ +e +++  +f dv   ++s++e++  ++  iN+   ++v ++ + l++  ++e
  CCE27332.1 873 EEKESQKTKRelwTMTSVEREKRSRCFADViieDGSASEDT--DNPRINRFRYTFVKRIHQPLFSFLESE 940
                 44333333333433455555555677888744322222222..378899999888888888888776665 PP

  == domain 2  score: 175.9 bits;  conditional E-value: 8.7e-55
      AAA_12    1 lerSlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdae.svkkrele...................................aqeale 61  
                  l+ Slf+ l+++++e+vv L++qYRm+++I+ ++++l+Y+gkL++++ s++kr+l+                                   +  +l 
  CCE27332.1 1259 LDVSLFKLLSDAHPEAVVNLEHQYRMCEDIMTLSNTLIYEGKLRCGTeSLRKRKLHvpnmkslsqvhynasllaqpgaprsfctgpsasrcWLYDLL 1355
                  589*******************************************956667777799999************************************ PP

      AAA_12   62 epleplvfidvekseeekekke..ksyiNeeEaelvvklvekllkkgseeerkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrek 156 
                  +  +++ f+d+++ +  +++++  k+++N++E+++v +lve+ll+ g+ +  +++gv+t Yraq+ llk+klk  +       +e++t d+fQGr+k
  CCE27332.1 1356 DSEARVRFVDTDTLNPIAREEAhgKRIVNSAEVRIVSQLVESLLTVGVPA--TEVGVMTHYRAQLFLLKEKLKCYAG------VEMHTTDRFQGRDK 1444
                  ***********9998887776677**************************..9********************4332......99************ PP

      AAA_12  157 dviilslVRsnekkeig.flkderrlNValTRAkskliivGnk 198 
                  +vi+lslVRsne+ +ig +lkd+rr+NVa+TRAk+kl++vG+ 
  CCE27332.1 1445 EVIVLSLVRSNESCNIGdLLKDWRRINVAFTRAKTKLLVVGSM 1487
                  *****************************************85 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.1       2.4     2e+03     138     185 ..      50      96 ..       6     112 .. 0.42
   2 !   55.2   0.1   1.1e-17     9e-15       2     107 ..    1083    1169 ..    1082    1179 .. 0.95
   3 !   61.4   0.0   1.4e-19   1.1e-16     190     260 ..    1184    1251 ..    1172    1252 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.4
      AAA_11 138 kelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeae 185
                 ++ + + e+e+++++  ++++ ++ +e+++ +  +e+ke +++ ++++
  CCE27332.1  50 NKFQYKPEKENEDEVS-EANEVSEANEVSEANEVSEAKEAHSTPRKTD 96 
                 2222222222222222.2222222233333333333333333333333 PP

  == domain 2  score: 55.2 bits;  conditional E-value: 1.1e-17
      AAA_11    2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneee 98  
                  ln +qr+ai++++s+++ +l+ G PGtgKT+ti++++++l          s+++ +L+++++++AvD++l+++ +          ++ i+R+g+++ 
  CCE27332.1 1083 LNIDQRRAIEKVMSTQDYSLVLGMPGTGKTTTIAHIIRAL---------VSQGKTVLLTSHTHTAVDNILLKMRS---------DNIPILRLGAPA- 1160
                  899*************************************.........799********************877.........9***********. PP

      AAA_11   99 riseavksv 107 
                  +++++v+++
  CCE27332.1 1161 KVHPEVQEF 1169
                  9****9986 PP

  == domain 3  score: 61.4 bits;  conditional E-value: 1.4e-19
      AAA_11  190 eevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpatvis 260 
                  +e  +e+ iv+tT+ g+ ++++ +    fd++i+DEA+q + p +  P+r + + +vLvGD++QLp++v++
  CCE27332.1 1184 KEAWHETPIVATTCLGINHPVFLER--SFDYCIVDEASQITLPICAGPIRMA-RSFVLVGDHNQLPPVVKN 1251
                  6778899******************..8************************.****************97 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.64   5.3e+02      52      94 ..     464     513 ..     456     525 .. 0.72
   2 !   59.4   0.0   4.7e-19   3.8e-16       1     158 [.    1082    1285 ..    1082    1313 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.64
      AAA_30  52 lAptgkaAkvLaeelgieastiakllkrlk......grarlepg.tlliv 94 
                 ++ + ++A+ L +++  +a+ti+++l +        ++  ++++ ++li+
  CCE27332.1 464 ATQSVQQAESLPQSSHKKAKTIQRYLITSVlageyvDKYGVTRSeKILII 513
                 3445678999****************777688888844555555577776 PP

  == domain 2  score: 59.4 bits;  conditional E-value: 4.7e-19
      AAA_30    1 elnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa........................eelgieasti 73  
                  +ln +Q++a+e++++++d ++++ G +GtGKtt+++++ +a+ ++g++v++ ++t++a +++                         e         
  CCE27332.1 1082 TLNIDQRRAIEKVMSTQD-YSLVLGMPGTGKTTTIAHIIRALVSQGKTVLLTSHTHTAVDNILlkmrsdnipilrlgapakvhpevqE--------- 1168
                  5899***********998.******************************************653455554444333333333333220......... PP

      AAA_30   74 akllkrlk...............................grarlepg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVea..... 133 
                    +                                    + + le++ +  ivDEa+ +     a  ++ a++     +lvGD++Ql++V +     
  CCE27332.1 1169 --F----VhlagqpkktfeeikeawhetpivattclginHPVFLERSfDYCIVDEASQITLPICAGPIRMARS----FVLVGDHNQLPPVVKneear 1255
                  ..2....1333456666666666666999*********9667888999***********************99....************96511112 PP

      AAA_30  134 .Gg....vlrdlveaagigtaeLtevvRqk 158 
                   Gg    ++++l +a+   +++L++ +R+ 
  CCE27332.1 1256 vGGldvsLFKLLSDAHPEAVVNLEHQYRMC 1285
                  222222245555554555666666666665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   2.1e-15   1.7e-12       1     144 [.    1087    1248 ..    1087    1250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 2.1e-15
      AAA_19    1 qreav.e.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae........................atT 71  
                  qr+a+ +  ++++  lv++ pGtGKT+++ hi++ lv++g    +++ll + t+ A++++  ++++ + +                         +T
  CCE27332.1 1087 QRRAIeKvMSTQDYSLVLGMPGTGKTTTIAHIIRALVSQG----KTVLLTSHTHTAVDNILLKMRSDNIPilrlgapakvhpevqefvhlagqpKKT 1179
                  8899955788999***************************....78**************9999777777888888888887777777777777677 PP

      AAA_19   72 iHrlalldfddlltealelleeaeeekklqeee.llivDEfqdvd.elqyrLlkallgekkklllvGDpdQliyv 144 
                  + ++   +++++   a + l   ++  +l++ + + ivDE+++++ +     ++       +++lvGD++Ql++v
  CCE27332.1 1180 FEEI-KEAWHETPIVATTCLG-INHPVFLERSFdYCIVDEASQITlPICAGPIRMAR----SFVLVGDHNQLPPV 1248
                  7766.4556665556666666.567778888889***********999998888777....69**********97 PP

>> Cas_Cas4  Domain of unknown function DUF83
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.17   1.4e+02       5      76 ..     575     647 ..     571     662 .. 0.68
   2 !   35.8   0.0   9.6e-12   7.8e-09      63     161 ..     726     828 ..     704     829 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.17
    Cas_Cas4   5 iqyyliCkrklwlish.eitleensetvelGkllheesyer...ekkevelsesikiDvvekekeklvvvEvKksk 76 
                 +   + C r++ l  + + t e +   v+ G +lhe  +e    +k ++ +  s +iD +  +k+   ++ +K + 
  CCE27332.1 575 VADSFGCMRRAVLQDRvKATSEASPPLVY-GTMLHEIFQEAllkNKWDLPF-LSSVIDKIC-DKHVEDLYTIKVGL 647
                 556678********995666666666666.******555544324466666.799999998.44444555555555 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 9.6e-12
    Cas_Cas4  63 ekeklvvvEvKkskkkeeaaklQllyYlllLe.kkgveikeGvleypkekkreev.elteelreelekaikeieeiisse..kppkvkkkkiCkkCaya 157
                 +++ +v++EvK +++ + ++++Q   Y llL  + +++i  G+l+y+++ k+ ++  +++elr+ + +  + +  + +++   pp  k+k++C kC  +
  CCE27332.1 726 SRTLTVPFEVKTGRHANSSHMAQTALYTLLLSdRYDIDIAYGILYYMETSKTMRIpAIQHELRHMILQRNQLACYVRERSvqLPPMLKSKHMCGKCYAK 824
                 4555778*************************9*********************9568889999999988888888877664788889999*****999 PP

    Cas_Cas4 158 elCl 161
                   C+
  CCE27332.1 825 TSCF 828
                 9998 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00025       0.2       2      35 ..    1102    1132 ..    1101    1151 .. 0.71
   2 ?    5.7   0.0     0.013        11      61     120 ..    1208    1265 ..    1177    1321 .. 0.79
   3 ?    6.1   0.1      0.01       8.3     173     233 ..    1422    1484 ..    1376    1485 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
  Viral_helicase1    2 vvhGvpGcGKStlirkllrtsliltvnrptaell 35  
                       +v G+pG GK+t i +++r     ++  +t+ l 
       CCE27332.1 1102 LVLGMPGTGKTTTIAHIIRA--L-VSQGKTVLLT 1132
                       799***************99..3.3333323333 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.013
  Viral_helicase1   61 tkgkililDEylllhaGyilllaa.lskaklvilfGDplQipfhsrnasfllahlpsslsh 120 
                        +++++i+DE+ + +   +  +a  +  a+ ++l+GD++Q p   +n+++ +  l +sl +
       CCE27332.1 1208 RSFDYCIVDEASQIT---LPICAGpIRMARSFVLVGDHNQLPPVVKNEEARVGGLDVSLFK 1265
                       35899******9998...555554378999************9999988777666666655 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.01
  Viral_helicase1  173 tqalkealgvrevttvhevqGltfdkVtlvllketdlelis...esrenllvAlTRhrkslvil 233 
                       +++lk+  gv+ ++t+   qG   ++ +l l ++++ + i    ++     vA+TR++++l+++
       CCE27332.1 1422 KEKLKCYAGVE-MHTTDRFQGRDKEVIVLSLVRSNESCNIGdllKDWRRINVAFTRAKTKLLVV 1484
                       45566667777.*********87777665555444444333588779999**********9875 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     3e-07   0.00024       2     110 ..    1103    1229 ..    1102    1241 .. 0.65

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3e-07
  Helicase_RecD    2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfefl.akglealglke................eekkkkaekaelrvrkqriey 78  
                     + + +G+GK+++++ ++ al+++gk ++l+t+ ++++v++++  +   ++  l+l                  +                + ++
     CCE27332.1 1103 VLGMPGTGKTTTIAHIIRALVSQGK-TVLLTSHTHTAVDNILLKMrSDNIPILRLGApakvhpevqefvhlagQ---------------PKKTF 1180
                     56789******************98.8***********998766503444444444465444444444444431...............44444 PP

  Helicase_RecD   79 iapdellklkeqa.................dllvvDEAAaiplpllkkl 110 
                      + +e+ +++                    d  +vDEA++i lp+    
     CCE27332.1 1181 EEIKEAWHETPIVattclginhpvflersfDYCIVDEASQITLPICAGP 1229
                     444444433322244445555555666666*************997655 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.5   2.9e+03     206     257 ..     423     482 ..     303     485 .. 0.61
   2 !   17.0   0.0     4e-06    0.0032       2      62 ..    1084    1143 ..    1083    1188 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.5
                    CSHHHHHHHHHHHHHHHHHHHHTC.......................EEHHHHHHHHHHHHHHCHHHHHHHHHHS CS
  UvrD-helicase 206 asdlqkkiaeflkeyqeqkkeena.......................lDfsdllhallelleeneelaealrery 257
                    a++++k                 a                       +Df+   +a+++  ++ e+l +  +++ 
     CCE27332.1 423 ATPKKKSS---------------AesqqtvklqgspgtefgddfdldIDFDAVELAATQSVQQAESLPQSSHKKA 482
                    11111111...............1222223334444444555555567777777777777777777666666655 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4e-06
                     SHHHHHHHHS...-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHH CS
  UvrD-helicase    2 npeqreaias...lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElk 62  
                     n +qr+ai++   ++   lv+  +G+GKT+++a+ i  l+ ++    + +l+   T  A + + 
     CCE27332.1 1084 NIDQRRAIEKvmsTQDYSLVLGMPGTGKTTTIAHIIRALVSQG----KTVLLTSHTHTAVDNIL 1143
                     567888887665588899************************9....77888888887777654 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.3e-05      0.01       2     159 ..    1083    1251 ..    1082    1292 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
                  --HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESSHHHHHCC.....TSEECHHHHT-TTSSS-HHHHHHHTSC CS
        PIF1    2 LneeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrsegkivlavAssGvAalll..e..gGrtahsrfkiplekdeestckikrgs 94  
                  Ln +Q+++++++      +      v G+ GtgKt    +++ +l s+gk+vl +  +  A  ++  +     +   r + p +++ e +  ++   
  CCE27332.1 1083 LNIDQRRAIEKV-----MSTQDYSLVLGMPGTGKTTTIAHIIRALVSQGKTVLLTSHTHTAVDNIllKmrSDNIPILRLGAPAKVHPEVQEFVHLAG 1174
                  899999999999.....3445566799****************************998877654400200222333333333333333332222222 PP

                  CCHHHHHC-SEEEEECGGGSBHHHHHH.....HHHHHHH.HCT-......-SCCCC....-EEEEE--TTS-----SS CS
        PIF1   95 klaellkktsliiwDEapmverecfea.....ldrtlrd.ilkeke...idkpFGG....ktvvlgGDfrQilPviek 159 
                  + ++ +++++   w E p+v  +c+       l+r++   i+ e +   +    G        vl GD  Q++Pv+++
  CCE27332.1 1175 QPKKTFEEIKE-AWHETPIVATTCLGInhpvfLERSFDYcIVDEASqitLPICAGPirmaRSFVLVGDHNQLPPVVKN 1251
                  22223333322.377777777777652222224444433122222232222233431111456888888888888865 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   7.4e-06     0.006       3      36 ..    1100    1133 ..    1098    1142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.4e-06
                  EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE CS
       SRP54    3 villvGlqGaGKTttlaKLaallkkegkkvllva 36  
                  + l++G+ G+GKTtt+a + + l ++gk+vll +
  CCE27332.1 1100 YSLVLGMPGTGKTTTIAHIIRALVSQGKTVLLTS 1133
                  5689***************************986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       8.5   6.9e+03      37      51 ..     287     301 ..     268     320 .. 0.75
   2 !   15.5   0.0   2.1e-05     0.017      15      59 ..    1090    1134 ..    1086    1174 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 8.5
      AAA_16  37 Ksslvrellralekd 51 
                 Ksslv++ll+ ++ +
  CCE27332.1 287 KSSLVTALLDTITSS 301
                 788888888776655 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2.1e-05
      AAA_16   15 alervrsgrpelvllsGesGvGKsslvrellralekdg.giflrgk 59  
                  a+e+v s +  + l+ G++G+GK++ + ++ ral  +g  ++l+ +
  CCE27332.1 1090 AIEKVMSTQ-DYSLVLGMPGTGKTTTIAHIIRALVSQGkTVLLTSH 1134
                  666666665.6889*****************999988634434433 PP

>> Csa1  CRISPR-associated exonuclease Csa1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.1e-05    0.0087      58     256 ..     582     791 ..     567     807 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
        Csa1  58 kRdvYLkrvlgvrgeeekklllGaaiHeavakaleelkkliysgekldsslerllvadeiv.......alledviekakelykylasrvsaelsevrsk 149
                  R   L+   +  +e++ +l+ G ++He++++al + k  +    ++  +     v ++++       +++e++  k  el     s vs++  +  + 
  CCE27332.1 582 MRRAVLQDRVKATSEASPPLVYGTMLHEIFQEALLKNKWDLPFLSSVIDKICDKHV-EDLYtikvglpSAKEHLLSKMTELSYWAKSFVSSRP-RTDAV 678
                 45555666677788899****************98888643322222222222222.334412222345555566677776544444444444.44455 PP

        Csa1 150 fekatedsvaarv.iPvlvefkvdGsllGlsslvrvDafililp........lvvelkvgsyke.ehelalaGYalalEsqleiPvDfGvlisvtvnge 238
                  e ++ + + + v   + ve +v   + Gl++++ + + +++ +        + +e+k+g+  + +h + +a Y+l l   ++i + +G+l ++ + ++
  CCE27332.1 679 VEDRNGKKANMAVtKLLDVEEHVWSPMYGLKGNIDATVEVTMSDghqsrtltVPFEVKTGRHANsSHMAQTALYTLLLSDRYDIDIAYGILYYMETSKT 777
                 4444444333333155679999999999999888765533322233334444889*****9765167778999*********************99888 PP

        Csa1 239 vklkaelvaisdslRkef 256
                 +++     ai+ +lR+  
  CCE27332.1 778 MRIP----AIQHELRHMI 791
                 7765....4555565554 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   5.9e-05     0.048       4      41 ..    1103    1140 ..    1101    1186 .. 0.85
   2 ?   -1.7   0.0       3.1   2.5e+03       7      28 ..    1490    1511 ..    1484    1515 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.9e-05
        MobB    4 ivgksgsGKTtLleklipelkarglrvgtiKhahhgfd 41  
                  + g+ g+GKTt + ++i++l ++g +v +  h+h ++d
  CCE27332.1 1103 VLGMPGTGKTTTIAHIIRALVSQGKTVLLTSHTHTAVD 1140
                  56999*****************************9988 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.1
        MobB    7 ksgsGKTtLleklipelkargl 28  
                   + sGK  +l++ i+ +++r++
  CCE27332.1 1490 LKHSGKENMLSRFISLMEERDW 1511
                  5789***********9999875 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.4e-05     0.036       8      69 ..    1087    1141 ..    1081    1220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.4e-05
                  HHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHH CS
      ResIII    8 QeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleq 69  
                  Q +aie+++    s++d  +++ m+ GtGKT ++a++i++l ++gk   +l+  ++ + ++ 
  CCE27332.1 1087 QRRAIEKVM----STQDYSLVLGMP-GTGKTTTIAHIIRALVSQGK--TVLLTSHTHTAVDN 1141
                  666666665....356667777776.*****************977..77777666654444 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   5.7e-05     0.046       9      32 ..    1108    1131 ..    1102    1134 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.7e-05
                  TSSHHHHHHHHHHHHHHTT--EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA    9 GvGKTtlaanLaralarrglrVll 32  
                  G+GKTt+ a+++ral  +g+ Vll
  CCE27332.1 1108 GTGKTTTIAHIIRALVSQGKTVLL 1131
                  9*********************97 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3     8e-05     0.065      27      57 ..    1102    1131 ..    1097    1132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8e-05
       DUF87   27 AilgsTGsGKSntvavLleellekkgatili 57  
                  ++lg+ G+GK++t+a +++ l+ ++g t+l+
  CCE27332.1 1102 LVLGMPGTGKTTTIAHIIRALV-SQGKTVLL 1131
                  79********************.88888875 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1    0.0002      0.16       3      41 ..    1102    1142 ..    1101    1151 .. 0.76
   2 ?   -0.6   0.0       1.5   1.2e+03     113     134 ..    1479    1502 ..    1462    1506 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
                  EEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHH CS
       AAA_5    3 lLvGppGtgKselaerlaaal..nreveyvqltrdtteedl 41  
                  l++G pGtgK++ + ++ +al  + +++    +  t  +++
  CCE27332.1 1102 LVLGMPGTGKTTTIAHIIRALvsQGKTVLLTSHTHTAVDNI 1142
                  789******************66666666666666666665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.5
                  ..-EEEEEESS--..-TT-TTHHH CS
       AAA_5  113 r.frviatanpld.rslnelspal 134 
                  + + v++++n+l+  +++++ +++
  CCE27332.1 1479 TkLLVVGSMNTLKhSGKENMLSRF 1502
                  2389*********55555555555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00019      0.16      22      61 ..    1087    1126 ..    1071    1146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
       AAA_7   22 ysyllelllknkkpvllvGptGtGKtviikdllkkldkek 61  
                  ++  +e++++ +   l+ G  GtGKt++i +++++l ++ 
  CCE27332.1 1087 QRRAIEKVMSTQDYSLVLGMPGTGKTTTIAHIIRALVSQG 1126
                  566789999**********************999987443 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00028      0.23       4      53 ..    1102    1151 ..    1100    1169 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00028
                  EEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCCHCCCT.E CS
        cobW    4 vltGflGsGKTtLlnhllenraglklavivNefgevsiDaellretgvei 53  
                  ++ G +G+GKTt + h+++   ++   v++    ++++D+ ll+ ++++i
  CCE27332.1 1102 LVLGMPGTGKTTTIAHIIRALVSQGKTVLLTSHTHTAVDNILLKMRSDNI 1151
                  678***************88888888888888888****99998776554 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.9   5.7e+03      65     108 ..     912     957 ..     873     966 .. 0.64
   2 ?   11.1   0.3   0.00033      0.27       4      30 ..    1103    1129 ..    1101    1131 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.9
                 ---SSEETTE.EE-HHHHHHHHHHHHHHHHHHH-.EEEE---STTG CS
    NTPase_1  65 akreprvgky.vvdvesfeelalealrkalsead.viviDEiGkmE 108
                 ++ +pr+ ++ + +v+++++   + l+ +ls+ + ++v DE G + 
  CCE27332.1 912 DTDNPRINRFrYTFVKRIHQPLFSFLESELSTGEpIVVSDEEGHFA 957
                 3566666666345668888888999988886555588889988765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00033
                  EE--TTSSHHHHHHHHHHHH...GGGE CS
    NTPase_1    4 iTGppGvGKtTlvkkvlellkssgvkv 30  
                  + G+pG+GKtT +  ++++l s+g +v
  CCE27332.1 1103 VLGMPGTGKTTTIAHIIRALVSQGKTV 1129
                  569*******************99876 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00043      0.35      34      60 ..    1103    1129 ..    1077    1137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00043
                  EEE-TTSSHHHHHHHHHHHHHCTT--E CS
        MeaB   34 ltGvPGaGkstlvealglelrrrGkrv 60  
                  + G+PG+Gk t++ +++  l+++Gk v
  CCE27332.1 1103 VLGMPGTGKTTTIAHIIRALVSQGKTV 1129
                  4589********************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1121  (0.0625244); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 1.11u 0.27s 00:00:01.38 Elapsed: 00:00:00.44
# Mc/sec: 10981.75
//
Query:       CCE27333.1  [L=395]
Description: uncharacterized protein CPUR_00807 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   14.6   0.2       0.02   14.1   0.2    1.2  1  DUF3413   Domain of unknown function (DUF3413)
      0.058   12.8   7.8      0.077   12.4   7.8    1.2  1  Mcm10     Mcm10 replication factor
      0.093   12.8   4.0        0.2   11.7   4.0    1.5  1  RcpC      Flp pilus assembly protein RcpC/CpaB
        5.7    5.5  10.4         10    4.6  10.4    1.5  1  Ndc1_Nup  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> DUF3413  Domain of unknown function (DUF3413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   4.5e-06      0.02     165     238 ..     160     235 ..     152     242 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.5e-06
     DUF3413 165 gkpvalvlllaflashlihiwadAnlyrpitqqkanlPLsypltAksf..lekhglldeeeyeerkaeqerksass 238
                 ++++a   l++f+ + l h+++  ++ + +tq+k+  PL  ++  k +   e+ gl+d ++ +++++ q ++++++
  CCE27333.1 160 ARFAAYYGLTVFIGTPLFHAVNFVRQSNAMTQDKRLRPLLEEVRVKAVgnTENRGLFDGQQQQQQQQIQRQQQQQQ 235
                 5667777799*******************************9988877447999****999988888777655543 PP

>> Mcm10  Mcm10 replication factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   7.8   1.7e-05     0.077      42     208 ..     219     381 ..     174     391 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
       Mcm10  42 qkqkderlekrkkkseeiqkrvlseskkpvkssstskekksalkskksasevpkassslaasklPkLgrgfsegedvlfldtspptaskssasaeaakl 140
                 q+q +++ + +++++++ q+  +s+s  + +ss +++ ++++ +  +s   +p+a s+ + ++ P +g   +   d+   d+ +p a++ +++  ++  
  CCE27333.1 219 QQQ-QQQQQIQRQQQQQQQQVYSSQSDDNYQSS-PQTIRAQTQQAWSSPGRQPEA-SREPEEPVPAMGW--DAASDI---DDASPIAPSAQSQSGSTYG 309
                 333.23333334443444444444444333333.333333333333334445666.6777778888876..666777...7777778899999999*** PP

       Mcm10 141 aAiaklkakgkvikkedpna..vkrKrsdsskvserveknlkss..eetkaeseeepaakkkreqlaylkse 208
                 +A + l++++   + +++ a       +++++ s r + n+ +s  + t++++e ++ +k +re  ++l+s+
  CCE27333.1 310 SAWERLRQQQYQNPPTQERApdFDDGWATDDEASPRYRGNSRTSafSTTTDSEEAKARSKAQREFDEMLESD 381
                 *********986666665554433333555589999999999885555566666666888888888888876 PP

>> RcpC  Flp pilus assembly protein RcpC/CpaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.0   4.6e-05       0.2      42      85 ..     184     237 ..     176     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.6e-05
        RcpC  42 ekedsesektvaelllqnvrVLavgq..........eeakkreeedeekkkeae 85 
                 +++++ ++++  ++ll++vrV avg+          +++++++ ++++++++++
  CCE27333.1 184 RQSNAMTQDKRLRPLLEEVRVKAVGNtenrglfdgqQQQQQQQIQRQQQQQQQQ 237
                 67889999************************9875333333333333333333 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  10.4    0.0023        10     365     476 ..     218     322 ..     195     385 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0023
    Ndc1_Nup 365 apknkasapvkelprlsksplkkkddeifgnsltaeaspkssssskegvekalsslakspgqs...psptarlsprarkllekaksrllskeqkealse 460
                  ++++++++++++++++       +++++  s++ ++ ++s+++ ++++++a+ss+ ++p +s    +p++ +   a++ +++a+  + s   ++++s 
  CCE27333.1 218 GQQQQQQQQIQRQQQQQ-------QQQVYS-SQSDDNYQSSPQTIRAQTQQAWSSPGRQPEASrepEEPVPAMGWDAASDIDDASPIAPS---AQSQSG 305
                 34555555555555554.......234555.55555666667799999999******999999877666666665555666666665555...444456 PP

    Ndc1_Nup 461 stikkkvekelaq.llk 476
                 st+ + +e+ ++q +++
  CCE27333.1 306 STYGSAWERLRQQqYQN 322
                 66777777777774443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2519  (0.140499); expected 358.6 (0.02)
Passed bias filter:                      867  (0.0483574); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 2828.62
//
Query:       CCE27334.1  [L=907]
Description: uncharacterized protein CPUR_00808 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-169  565.3  86.2     3e-169  565.3  86.2    1.8  2  Aim21     Altered inheritance of mitochondria protein 21


Domain annotation for each model (and alignments):
>> Aim21  Altered inheritance of mitochondria protein 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  565.3  86.2  1.7e-173    3e-169       1     724 [.      29     785 ..      29     786 .. 0.89
   2 ?   -9.9  10.3         1   1.8e+04     527     580 ..     804     856 ..     795     866 .. 0.59

  Alignments for each domain:
  == domain 1  score: 565.3 bits;  conditional E-value: 1.7e-173
       Aim21   1 pkvPpRP.srridrSvsPnpdsfapsPLne..............slsktssedvpsrppSvelpslgeegaeyealeeaeases...stPaqtrnvaed 81 
                 pkvPpRP ++ ++rS sPn+d+fapsPL +               +s+++s+d  +r+ Sv lps+geeg+ey a+ ++  +++   s P qtr   + 
  CCE27334.1  29 PKVPPRPgTKSVNRSISPNRDRFAPSPLMQgipaesmdngpskhHTSHQHSSDPIERSRSVDLPSVGEEGMEYGAVADELSHDEpppSAPEQTRLLDKG 127
                 9*****************************************99999*******************************9999999************** PP

       Aim21  82 lklhapkPslpsssakarvqavtrtdssqaaaaGlGrasspedrdvrkrssrsleskasassadSsassterptsiavekdehgipeigqrvPmypnag 180
                 l lhapkPslp+ssak++v avtrtds +aaa+G+G++ss e+r v+++        ++ ++  Ss s  + +   + ++d++gipeigqrvPm++  g
  CCE27334.1 128 LTLHAPKPSLPASSAKKQVMAVTRTDSDKAAAFGIGQPSSREERAVSQQ--------STRKRPTSSYSTCSDQG--NHTDDDRGIPEIGQRVPMNKHLG 216
                 *****************************************99955433........34444455553333222..3469******************* PP

       Aim21 181 dVqapsPspysseasdqrsgrsHeRkkSgreslPpgsygLhghgvipndkfekawyekhpeelkkeeakeygpvvgeerprdwalssddlnkiVketAs 279
                 dVqapsP p +     + ++ +H Rk+S+r slPpgsygLhghgv+p+dk+ ka+yekhpe+l++e+   +     ++r++d+a+ss dlnk+V+++As
  CCE27334.1 217 DVQAPSPGPGH-----ESPKSHHVRKHSAR-SLPPGSYGLHGHGVAPKDKLGKAYYEKHPEALQREQHTPH-----HDRQNDYAMSSTDLNKLVRDSAS 304
                 **********9.....5899**********.8**********************************99976.....78********************* PP

       Aim21 280 tgvGlgtskevvstpeEqvgyiaseeytsRlsspapqsss...................vihiDeprhrsepssesgeeeedateergkeepilasDev 359
                 + +  g s ev +tp+++v+++a+e+ytsR+ss +p s                      ih+D+ ++ +  + ++ ++eed+   + ++ pilasDev
  CCE27334.1 305 RQAVTG-SSEVRGTPTDDVAFEATEKYTSRISSSRPSSVVtptasgagasqseaseddkGIHVDDGKNPEFCHYGEDSGEEDK--AEDYSVPILASDEV 400
                 *99999.99*****************************999************************999966666666666654..45699********* PP

       Aim21 360 akesakee..pavspsaereesvkyeakereesvpesreeskpasieesvpseaehtpledveEyEplfpedeseeavkkateessrlkrpetekhrfp 456
                  k ++     pa+ p   r    ++++ e+ + +p sr++  + +++ s+++e + tpledveEy+plfped +e++v  ++ e +       e+ +fp
  CCE27334.1 401 GKDPNPRGhkPAIRPHLHRH--GSSYDGEDPPPRPASRSK--T-PHHSSIVQEHKPTPLEDVEEYDPLFPEDGKEATVVVQEPEEE-----HCERNHFP 489
                 9887766566**********..667778888888888864..3.88******************************9999999977.....67788*** PP

       Aim21 457 sedvwedsPsslqltatvstpe..........vakkrafetPeqetarsseelaeke.............ekkll....ksedkkerpelakqrfpsrd 528
                 s+dvwed+P+s+ +ta+vstpe            +  +  tP +++a ++eelaeke                 +    ++ + ++rp  + +rfpsrd
  CCE27334.1 490 SKDVWEDAPNSVHVTAEVSTPEvpepektrssAHQAVRPITPAHAFALYQEELAEKEakgrtnnylplqdSRPPWvgqqPHLQTSSRPTSSSKRFPSRD 588
                 **********************9999988863222333459********************999999976333336666899***************** PP

       Aim21 529 vweDapesqelettvetpq.eevkekspevptKpsiPa..rPeipvrpskksvtsptekkkpPpiPkkpkPqIparpakaseeeskeesadaavkakPk 624
                 vweD+pes+  e++v+ +  e++  + p+ p+K s+P+   P++p+rp+ ++ + ++ +k+pPp+ +kpkP +p rp+k+s   sk++   ++ k+kP+
  CCE27334.1 589 VWEDTPESHIHEAEVSASPiEQARPEIPARPAKKSSPSpeLPAVPARPAGRQNSGDDATKQPPPVSEKPKPSVPPRPSKSSLGDSKDG--ASSSKPKPP 685
                 **************99754344444444445555555444555***************************************999995..6779***** PP

       Aim21 625 vparpggskiaalragFlkdLnsrLklGPqapkkkeekeekgeaeekeepkekapLsdaRkgRarGParRkPAae.....kvvatekkvvaatvsivep 718
                 vp+++ g+kiaal+agF++dLn+rL+lGPq  kk+e+ke     ee  e++ekapL daRk+RarGP+rR+PAa+     + + +e +++a+ +s++ p
  CCE27334.1 686 VPSKSVGGKIAALQAGFMSDLNKRLQLGPQGVKKEEPKE-----EEPVEEQEKAPLVDARKSRARGPQRRAPAAKstaasSSSSPEAAPAAPVLSFSMP 779
                 *********************************776655.....599****************************77766556678899999******* PP

       Aim21 719 vsvwki 724
                  +vw++
  CCE27334.1 780 QTVWSV 785
                 ****98 PP

  == domain 2  score: -9.9 bits;  conditional E-value: 1
       Aim21 527 rdvwe.DapesqelettvetpqeevkekspevptKpsiParPeipvrpskksvts 580
                  +v++ +ape++ l ++ +++ +  k++s  + +K+  P+ P  pv p++ + t+
  CCE27334.1 804 DEVKTyEAPEASALSENGPPA-PTSKQDSVPESKKELDPSEPP-PVPPAELHETA 856
                 555544788888888886665.555555555558888888776.55554443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 6200.21
//
Query:       CCE27335.1  [L=149]
Description: uncharacterized protein CPUR_00809 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-39  134.9  12.9    1.6e-39  134.7  12.9    1.1  1  Cg6151-P  Uncharacterized conserved protein CG6151-P


Domain annotation for each model (and alignments):
>> Cg6151-P  Uncharacterized conserved protein CG6151-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7  12.9   9.1e-44   1.6e-39       1     113 []      19     131 ..      19     131 .. 0.99

  Alignments for each domain:
  == domain 1  score: 134.7 bits;  conditional E-value: 9.1e-44
    Cg6151-P   1 lGilsiilcialGianiftlsvvlivfsilalvsgfvvlfiEvPlllricptsskfdefiekfetnwmraalYlvmavvqwlslivqatslivaavlll 99 
                 +Gils+i+c+a+Gi +ift+ +++ivf+++a++s+f+++fiEvPlllricptsskfd++++k++tn+mraa+Y vm+++q+lsl+  atsl++aav+ll
  CCE27335.1  19 FGILSMIICLATGISSIFTFLPLIIVFAAIAIASSFLIIFIEVPLLLRICPTSSKFDDLVRKISTNYMRAAAYGVMSLLQFLSLLRAATSLVAAAVFLL 117
                 69************************************************************************************************* PP

    Cg6151-P 100 ltgvlYglaalkkq 113
                 +t+++Y la+lk+q
  CCE27335.1 118 ITSLCYVLAGLKGQ 131
                 ************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1007  (0.056166); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1056.68
//
Query:       CCE27336.1  [L=547]
Description: uncharacterized protein CPUR_00810 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-13   49.0   0.2    5.8e-12   46.0   0.1    2.4  2  APH             Phosphotransferase enzyme family
     0.0013   18.4   0.1     0.0021   17.7   0.1    1.2  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
       0.14   11.5   0.5       0.21   10.8   0.5    1.2  1  EcKinase        Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.4   8.6e+03     117     143 ..      35      62 ..       9      71 .. 0.58
   2 !   46.0   0.1   9.7e-16   5.8e-12      29     207 ..     323     507 ..     315     534 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.4
                 SHHCHTCCHHHHHHCHHH.CCCGCCTCC CS
         APH 117 dflaqdlellrqlesata.rllaselld 143
                 +++++ l  +r++  ++  +++a++l+ 
  CCE27336.1  35 RDSKDPLQTARYILGRCSaDGDALDLDT 62 
                 4455557788888888876666665555 PP

  == domain 2  score: 46.0 bits;  conditional E-value: 9.7e-16
                 -TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHC...HTC CS
         APH  29 pparaaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladfla...qdl 123
                 p++  ++ +++e+a l+l++++   pvP +l++  d ++++ll   i++vp     ++ls ++   l+++l  +  +l +++++ +p   ++    +  
  CCE27336.1 323 PTR-RYPILANEFAALQLVRRHTSvPVPSALDLVSDSQDSYLLTTKISGVPLGWCIDTLSRDEVTTLVGDLQKYFSELRAIPKEVSPKYAITNalgKAC 420
                 444.6777899*********98888********************************999999***************999766666555554222222 PP

                 CHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S..........SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHC CS
         APH 124 ellrqlesatarllaselldlleeleeqvlaalaallpg..........elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlav 207
                 ++ r++  +  +++ ++ +     + ++  + + ++l+             + v++HgD + +N+++   +gr++G+iD+e++g+ p  +D   
  CCE27336.1 421 YDGRLITGS--QYDEARGDF-FGPFVDE--DDFNDTLRCiplpnavhrsGHEIVFTHGDMNMRNIMMY--NGRLSGFIDWEMCGWYPDYWDYTK 507
                 233444444..444444444.3333332..2222222222223445566679****************..***************998888755 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   3.5e-07    0.0021     139     182 ..     462     504 ..     447     511 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.5e-07
                     HCHGG-EEEE-S--SGGGEEE.-CTTEEE.E--GTT-EEEEHHHH CS
  Choline_kinase 139 eelespvvfcHnDlqegNillnkeekklv.lIDFEYagynyrgfD 182
                     +++ +++vf H D+  +Ni++   +++l  +ID+E +g  +  +D
      CCE27336.1 462 HRSGHEIVFTHGDMNMRNIMM--YNGRLSgFIDWEMCGWYPDYWD 504
                     566788***************..6666644*******98887777 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   3.6e-05      0.21     209     250 ..     462     498 ..     444     506 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.6e-05
    EcKinase 209 ekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQlsry 250
                 +++++  v++HGD++++Nim+ y+ +       ++D+ ++ +
  CCE27336.1 462 HRSGHEIVFTHGDMNMRNIMM-YNGR----LSGFIDWEMCGW 498
                 5566778*************9.5433....245777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3703.59
//
Query:       CCE27337.1  [L=485]
Description: uncharacterized protein CPUR_00811 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.001   19.0   0.0     0.0036   17.3   0.0    1.9  1  APH              Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.067   12.4   0.0       0.11   11.6   0.0    1.2  1  Fructosamin_kin  Fructosamine kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     4e-07    0.0036      26     174 ..     320     476 ..     308     480 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4e-07
                 EEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHC CS
         APH  26 rrnpparaaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr...klsaaqlpellealgeflaalhqvdpaalpladfla 120
                 +  p++  ++ +++e+a l+l++++   pvP +l++  d+  ++   +l + v g +l r   +ls ++   l+++l   l +l +++++ +p   ++ 
  CCE27337.1 320 KTTPTR-RYPMLANEFAALQLVRRHTSvPVPSALDLASDAKNSY---LLTTKVRGIPLGRcidTLSRDEVTTLVGDLQKHLSELRAIPKEVSPKYAITN 414
                 555555.889999**********998889999999655555555...7999999999999999999999999999999999999999666555544443 PP

                 HTCCHHHHHHCHHH..CCCGCCTCCHHHHHHHH.HHHHHHHH--S.......SS-EEEE-SS-S CS
         APH 121 qdlellrqlesata..rllaselldlleeleeq.vlaalaallpg.......elptvllHgDlh 174
                   l  + + ++ +   +++ ++ +     + ++   +  ++ +p          + v++HgDl+
  CCE27337.1 415 -ALGKACYDARIMMatQYDEARGDF-FGPFVDEdDFNDTLRCVPLpdvvhssGHEIVFTHGDLN 476
                 .233333333332220333333333.33333321122222222224555566666777777776 PP

>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.3e-05      0.11      44      91 ..     318     365 ..     307     370 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.3e-05
  Fructosamin_kin  44 FvklnekealemFeaEaesLealaetqtirvPkvlavGelkdasfLvl 91 
                      ++k+  ++  +m ++E + L+++++ +++ vP++l + +  ++s+L++
       CCE27337.1 318 YLKTTPTRRYPMLANEFAALQLVRRHTSVPVPSALDLASDAKNSYLLT 365
                      799999999*************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3654.92
//
Query:       CCE27338.1  [L=547]
Description: uncharacterized protein CPUR_00812 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-16   59.1   0.1    2.4e-15   57.1   0.1    1.9  1  APH             Phosphotransferase enzyme family
    0.00022   20.9   0.1    0.00037   20.1   0.1    1.2  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
      0.051   12.9   0.5      0.077   12.3   0.5    1.2  1  EcKinase        Ecdysteroid kinase
        0.1   12.2   0.0        2.3    7.8   0.1    2.2  2  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.1   5.4e-19   2.4e-15      30     229 ..     324     527 ..     309     538 .. 0.73

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 5.4e-19
                 TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHC...HTCC CS
         APH  30 paraaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladfla...qdle 124
                 +  +++++++e+a l+l++++   pvP +l++  d   ++ll   + +vp     ++ls ++   l++++  +l +l +++++ +p   ++    +  +
  CCE27338.1 324 TM-SHRQLANEFAALQLVRRHTSvPVPSALDLASDSKKSYLLTTKVRGVPLGWCIDTLSRDEVTTLVGDVQKYLSELRAIPKEVSPKYAITNalgKECY 421
                 34.89**************99888*******7666666666666666666666666************************7776666666652333344 PP

                 HHHHHHCHHHCCCGCCTCCHHHHHHHH.......HHHHHHHH--S.SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHHCSCH CS
         APH 125 llrqlesatarllaselldlleeleeq.......vlaalaallpg.elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavllrswtse 215
                 ++r ++ +  +++ ++ +     + ++          al++ +++   + v++HgDl+ +N++++  +gr++G+iD+e++g+ p  +D   +   +t +
  CCE27338.1 422 DARIIMGS--QYDEARGDF-FGPFVDEddfnntlRCGALPDVVHSsGHEIVFTHGDLNMRNIMMH--NGRLSGFIDWETCGWYPDYWDYTKAH--FTTK 513
                 66666666..555555555.3334443333332224556666666999*****************..****************9888877766..5677 PP

                 CCCHCHHHHHHHHC CS
         APH 216 ldpeflaallraye 229
                 l+ ++l+   +a +
  CCE27338.1 514 LHRRWLKMVDAAFG 527
                 77777777666665 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   8.3e-08   0.00037     138     182 ..     461     504 ..     447     512 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8.3e-08
                     HHCHGG-EEEE-S--SGGGEEE.-CTTEEE.E--GTT-EEEEHHHH CS
  Choline_kinase 138 leelespvvfcHnDlqegNillnkeekklv.lIDFEYagynyrgfD 182
                     ++++ +++vf H Dl  +Ni++  ++++l  +ID+E +g  +  +D
      CCE27338.1 461 VHSSGHEIVFTHGDLNMRNIMM--HNGRLSgFIDWETCGWYPDYWD 504
                     5567889***************..6666644*******99888887 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   1.7e-05     0.077     209     248 ..     462     496 ..     443     506 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
    EcKinase 209 ekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQls 248
                 + +++  v++HGDl+++Nim++  + +      ++D+ ++
  CCE27338.1 462 HSSGHEIVFTHGDLNMRNIMMHNGRLS-----GFIDWETC 496
                 5566778**************876543.....56666555 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.031   1.4e+02      49      78 ..     324     354 ..     318     395 .. 0.86
   2 ?    7.8   0.1    0.0005       2.3     124     149 ..     467     493 ..     457     496 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.031
                 HHHHHHHHHHHHHHHHHHHTT.--S--EEEE CS
        RIO1  49 klvklwaekEfrnLkrleeag.vpvPkpiel 78 
                  +++    +Ef++L+ ++++  vpvP++++l
  CCE27338.1 324 TMSHRQLANEFAALQLVRRHTsVPVPSALDL 354
                 677778889*******998866888888776 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0005
                 TSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 124 eaglvHaDLSeyNvlvded.kvviIDv 149
                 e    H+DL+  N++++++    +ID+
  CCE27338.1 467 EIVFTHGDLNMRNIMMHNGrLSGFIDW 493
                 55578**************55579998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3950.45
//
Query:       CCE27339.1  [L=159]
Description: uncharacterized protein CPUR_00813 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1257.18
//
Query:       CCE27340.1  [L=547]
Description: uncharacterized protein CPUR_00814 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-16   58.8   0.2      3e-15   56.8   0.1    1.9  1  APH             Phosphotransferase enzyme family
    0.00026   20.7   0.1    0.00045   19.9   0.1    1.3  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
      0.026   13.8   0.1      0.039   13.3   0.1    1.2  1  EcKinase        Ecdysteroid kinase
       0.16   11.6   0.1        2.6    7.6   0.2    2.1  2  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.1   6.6e-19     3e-15      32     205 ..     325     505 ..     283     524 .. 0.79

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 6.6e-19
                 S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHC...HTCCHH CS
         APH  32 raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladfla...qdlell 126
                  +++++++e+a l+l++++   pvP +l++  d e ++ll   i++vp     ++ls ++   l+++l  +l +l +++++ +p   ++    +  +++
  CCE27340.1 325 MSDRKLANEFAALQLVRRHTSvPVPSALDLASDSEKSYLLTTKISGVPLGWCIDTLSRDEVTTLVGDLQKYLSELRAIPKEVSPKYAITNalgKACYDA 423
                 3899*************99888*******9999999999999999999999999************************777666666664222223344 PP

                 HHHHCHHHCCCGCCTCCHHHHHHHH.HHHHHHHH--S.......SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHH CS
         APH 127 rqlesatarllaselldlleeleeq.vlaalaallpg.......elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDl 205
                 r  ++   +++ ++ +     + ++   +  ++ +p          + v++HgDl+ +N++++  +gr++G+iD+e++g+ p  +D 
  CCE27340.1 424 RIMMAT--QYDEARGHF-FGPFVDEdDFNDTLRCVPLpdvvhssGHEIVFTHGDLNMRNIMMH--NGRLSGFIDWETCGWLPDYWDY 505
                 444444..555555555.4444443222333334444677778999*****************..**************98876665 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1     1e-07   0.00045     139     183 ..     462     505 ..     446     514 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1e-07
                     HCHGG-EEEE-S--SGGGEEE.-CTTEEE.E--GTT-EEEEHHHHH CS
  Choline_kinase 139 eelespvvfcHnDlqegNillnkeekklv.lIDFEYagynyrgfDl 183
                     +++ +++vf H Dl  +Ni++  ++++l  +ID+E +g  +  +D 
      CCE27340.1 462 HSSGHEIVFTHGDLNMRNIMM--HNGRLSgFIDWETCGWLPDYWDY 505
                     567788***************..6666644*******998888875 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   8.6e-06     0.039     209     247 ..     462     495 ..     405     506 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.6e-06
    EcKinase 209 ekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQl 247
                 + +++  v++HGDl+++Nim++  + +      ++D+ +
  CCE27340.1 462 HSSGHEIVFTHGDLNMRNIMMHNGRLS-----GFIDWET 495
                 6777888**************876443.....4555555 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.048   2.1e+02      50      78 ..     325     354 ..     319     388 .. 0.84
   2 ?    7.6   0.2   0.00058       2.6     124     149 ..     467     493 ..     459     495 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.048
                 HHHHHHHHHHHHHHHHHHTT.--S--EEEE CS
        RIO1  50 lvklwaekEfrnLkrleeag.vpvPkpiel 78 
                 ++     +Ef++L+ ++++  vpvP++++l
  CCE27340.1 325 MSDRKLANEFAALQLVRRHTsVPVPSALDL 354
                 66667789******9998866888888776 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00058
                 TSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 124 eaglvHaDLSeyNvlvded.kvviIDv 149
                 e    H+DL+  N++++++    +ID+
  CCE27340.1 467 EIVFTHGDLNMRNIMMHNGrLSGFIDW 493
                 45568**************55579998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4139.56
//
Query:       CCE27341.1  [L=468]
Description: uncharacterized protein CPUR_00815 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-12   45.3   0.1    9.1e-07   28.1   0.0    2.5  3  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil


Domain annotation for each model (and alignments):
>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   5.1e-11   9.1e-07      34     166 ..      45     180 ..      10     213 .. 0.67
   2 !   14.7   0.0   6.1e-07     0.011     188     267 ..     222     312 ..     219     322 .. 0.68
   3 ?   -3.0   0.0      0.15   2.6e+03     291     306 ..     433     448 ..     427     453 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 5.1e-11
                      C.-CE----EEEEECCG.TEEEEEEEEEETTTTEEEEEEEEEETTTCCC..TSSSEEEEEEEE.-TTT--EEEEEE-HHHHHHHHHHHHHHHHH CS
  OCD_Mu_crystall  34 g.kvkkpprvalevkds.rgelevmpaylagrellgvKlvnshpenkks..glptvtalvvLn.dpetGvplalmdatlltalRTaAvsavaak 122
                      g  v ++p   + v+   +     mp+  ++   +g K+v    +   +  +++    ++vL   +  G p+ l+ a  lta RTa +sa    
       CCE27341.1  45 GeDVYQQPLRTSTVHSAtKATSLYMPSCGPE--GMGCKVVSLTSSAATEdpAVKPISPTGVLTlFTPDGRPAGLVHASTLTAFRTALASAC--- 133
                      3544444443444443325555679998888..99999997655544333466666666666414667********************987... PP

                      HHS-TT.--EEEEE--SHHHHHHHHHHCCCS-..-SEEEEE-SSHHH CS
  OCD_Mu_crystall 123 yLarkd.asvlaiiGaGvqaetqlealkavld..ikevriydrdeea 166
                       L+r++  ++l+++G G qa+ +++    +++  ik+v i +r+ + 
       CCE27341.1 134 LLSRRNhVRTLTVFGSGSQAYWHVRLALLMRGrtIKHVHIINRRFSD 180
                      577665279************9987655444444*****99987544 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6.1e-07
                      HHHHTTSSEEEE----SS.....-SB-.GGGS-TT-EEEE-S--STT--SB-HHHHHCCEEEE.....SHHHHHHHCCCCHCHHHTTSSTC CS
  OCD_Mu_crystall 188 eeavegadivvtvTaaka.....pilk.aewvkpGahinavgadapgkteLdddilkradifv.....dseaqareeGeiqvaiekgvlae 267
                      +e +  ad++  +T++++      il+ +e  k G +i avg+  p+ +eL + +l  +          +   a e G i v  ++gvl+e
       CCE27341.1 222 KEQIRSADVIYCCTPSRQdlfeaSILTsHEGRKKGRLIVAVGSYTPDMRELPEGLLHLVTRSHdknhrHYHRHADEGGVIVVDTLEGVLKE 312
                      68899*************6666655542456689*****************9887765443331001245555566666666555555554 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.15
                      EEEEE----HHHHHHH CS
  OCD_Mu_crystall 291 itlfdsvGlaveDvaa 306
                      +++++svGl+  D+++
       CCE27341.1 433 TVVYKSVGLGLMDLVV 448
                      789*******999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3709.60
//
Query:       CCE27342.1  [L=419]
Description: uncharacterized protein CPUR_00816 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-73  245.2   2.0    9.7e-73  244.7   2.0    1.2  1  Thiolase_N     Thiolase, N-terminal domain
    1.2e-42  144.4   0.3    3.1e-42  143.1   0.2    1.8  2  Thiolase_C     Thiolase, C-terminal domain
  ------ inclusion threshold ------
       0.01   15.5   1.5       0.12   12.0   0.5    2.3  2  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
       0.11   12.7   0.0       0.31   11.2   0.0    1.9  1  ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.7   2.0   2.2e-76   9.7e-73       1     260 []      34     289 ..      34     289 .. 0.98

  Alignments for each domain:
  == domain 1  score: 244.7 bits;  conditional E-value: 2.2e-76
                 EEEEEEEEE--EE.TTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigk.fggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqs 98 
                 vv+ +  r++++k  +g +kd++a++L a + kal+++ +++p+ v+++ vG+vl+ g g++++r+a l ag+pe++++ t+n++csSgl+a +++a++
  CCE27342.1  34 VVVTACCRSAFTKgGKGGFKDTPASDLMAGVFKALIDRSKINPALVEDICVGTVLAPGGGATEMRAAGLLAGFPETAAVRTLNRQCSSGLQACIDIANQ 132
                 7899999******99************************************************************************************ PP

                 HHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTB CS
  Thiolase_N  99 iaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdei 197
                 i+ag +d+ v  GvEsms ++   +++  s++   +++  ++ +p+           G+ +e +ak+ kisR +qd+f + s+qka++aqkag F++ei
  CCE27342.1 133 IKAGMIDIGVGAGVESMSLQYGPSAVTEFSEALEANQESANCKVPM-----------GVLSEDMAKDLKISRADQDAFSALSYQKAVKAQKAGLFDEEI 220
                 ******************************************9998...........****************************************** PP

                 E-EEEEESSSEE......EE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEHH CS
  Thiolase_N 198 vPvkvkgkkgkk......tvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmses 260
                 vP++vk ++ k+      tv++d+++r+++t e+L k+kpaF  +G+++AgnasqisDGaaavllm++s
  CCE27342.1 221 VPLTVKFEDPKSgeikeiTVSRDDGVREGITKESLGKIKPAFAADGSIHAGNASQISDGAAAVLLMRRS 289
                 ******999885578999************************************************985 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.2   5.6e+03      13      28 ..     144     159 ..     133     168 .. 0.71
   2 !  143.1   0.2     7e-46   3.1e-42       2     120 ..     297     415 ..     296     418 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
                 EE--GGGGGGHHHHHH CS
  Thiolase_C  13 vgvdpeilglgPayai 28 
                 +gv+   l++gP  ++
  CCE27342.1 144 AGVESMSLQYGPSAVT 159
                 6788888888887765 PP

  == domain 2  score: 143.1 bits;  conditional E-value: 7e-46
                 --SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHC CS
  Thiolase_C   2 kplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkke 100
                 ++l+k++s a+vgv+p  +g gP  ai+k+l+ ag++ +d+d++EinEAFa+q+L +a++l++  ek+N +GGaia GHPlG++GaR+v tll+elk+ 
  CCE27342.1 297 TILGKYVSGAVVGVKPLLMGQGPWKAIPKALNLAGISRDDVDIYEINEAFASQCLWCANELGIPHEKINPKGGAIAFGHPLGCTGARQVSTLLYELKRT 395
                 578899999****************************************************************************************** PP

                 TTSEEEEEEEETTTEEEEEE CS
  Thiolase_C 101 ggklgvaalCigggqgvalv 120
                 g+k+g +++C g+g+g+a+v
  CCE27342.1 396 GKKVGSTSMCVGTGMGMAAV 415
                 *****************987 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   2.6e-05      0.12     174     227 ..     118     175 ..      99     178 .. 0.76
   2 ?    2.0   0.0     0.029   1.3e+02     234     253 .]     272     291 ..     248     291 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.6e-05
                    GGGHH.HHHHHHHHHHHHTTS-SEEEEEEEE--...-SHHHHHHHHHTT.BB-TTSGGG CS
  ketoacyl-synt 174 ACsSs.lvavhaavqslrsgeadvalaGGvell...ltpeavagfsaag.llspdgrck 227
                     CsS+  + ++ a +++++g +d+ +  Gve +    +p+av  fs+a  + +++ +ck
     CCE27342.1 118 QCSSGlQACIDIA-NQIKAGMIDIGVGAGVESMslqYGPSAVTEFSEALeANQESANCK 175
                    6****66666777.****************98722246777777777765555556676 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.029
                    -SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 234 dGfvlGEGvGavvLkrleda 253
                    +   +++G++av+L+r+++a
     CCE27342.1 272 NASQISDGAAAVLLMRRSTA 291
                    777799**********9986 PP

>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     7e-05      0.31       3      82 ..     329     413 ..     327     418 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7e-05
                    HTT--GGG-SEEEE-SSSHHHHHHHHHHHT--GGGB.....--TH.HHH-B-GGGHHHHHHHHHHHTTSS-TT-EEEEEEEETTTE CS
  ACP_syn_III_C   3 kagltpedidalvphqanlriidavakklglpeekv.....vvnl.deyGntsaasiplaLdeaveegklkpgdlvllvgfGaGlt 82 
                     ag++ +d+d + ++ a ++     a++lg+p ek+     ++ + + +G t+a  +  +L e+ ++g  k g + + vg+G+G+ 
     CCE27342.1 329 LAGISRDDVDIYEINEAFASQCLWCANELGIPHEKInpkggAIAFgHPLGCTGARQVSTLLYELKRTG-KKVGSTSMCVGTGMGMA 413
                    589999**************************99763333345556999*****************99.47888999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2988.99
//
Query:       CCE27343.1  [L=146]
Description: related to M.capricolum transcription repressor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-50  167.8   0.2    1.1e-49  167.6   0.2    1.0  1  SelR            SelR domain
     0.0071   16.1   0.5        0.8    9.5   0.0    2.3  2  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
  ------ inclusion threshold ------
      0.017   15.1   1.9        1.1    9.4   0.1    2.3  2  DZR             Double zinc ribbon
      0.042   13.5   0.1       0.12   12.1   0.1    1.8  1  Importin_rep    Importin 13 repeat
       0.11   12.7   0.6       0.51   10.6   0.6    1.9  1  Yippee-Mis18    Yippee zinc-binding/DNA-binding /Mis18, centr
       0.22   11.1   1.6        1.6    8.3   0.2    2.3  2  TF_Zn_Ribbon    TFIIB zinc-binding


Domain annotation for each model (and alignments):
>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   0.2   3.6e-53   1.1e-49       1     121 []      11     132 ..      11     132 .. 0.98

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 3.6e-53
                 HHHCTSHCCHHHHHHHTT-SSTTSSSTSS--.SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTSEEEEEEETTCECEEEEEE CS
        SelR   1 elkkkLtpeqyevlrekgterpftgeyekek.ekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgmertevvcakcdahlGhvF 98 
                 e+++ L++eq+++lr+kgte+p +g+y+k++ e+Gvy+ca+c++pL+++++kf+sgcGwp++++ i++ avk+++d+ +gm rte+vc++c++hlGhvF
  CCE27343.1  11 EWQAVLNKEQFRILRQKGTEAPGSGTYDKHYpEEGVYTCAGCHAPLYKANHKFKSGCGWPAYFDSIPG-AVKRHEDRAFGMLRTEIVCSNCGGHLGHVF 108
                 79***************************98799**********************************.****************************** PP

                 C.TSSSSS.SEEEEE-CCCEEEEE CS
        SelR  99 e.dgpkpttgkrycinsvslkfkp 121
                 + +g++++t++r+c+nsvslkf+p
  CCE27343.1 109 KgEGYSTPTDERHCVNSVSLKFSP 132
                 **********************86 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.1     0.009        27      32      51 ..      34      53 ..      32      55 .. 0.88
   2 !    9.5   0.0   0.00027       0.8      20      36 ..      92     108 ..      83     116 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.009
  zinc_ribbon_10 32 nGlapkeeleevkyrCpkCg 51
                    +G++ k  +ee  y C+ C 
      CCE27343.1 34 SGTYDKHYPEEGVYTCAGCH 53
                    689989999999*******7 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00027
  zinc_ribbon_10  20 ryalICskChshnGlap 36 
                     r  ++Cs+C  h G + 
      CCE27343.1  92 RTEIVCSNCGGHLGHVF 108
                     789*********99875 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00036       1.1      27      49 .]      43      68 ..      16      68 .. 0.81
   2 ?    5.1   0.2    0.0076        23      13      23 ..      95     105 ..      80     128 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00036
         DZR 27 a..edrCpsCgek.vdpearfCpeCG 49
                +   ++C  C+++  +++++f   CG
  CCE27343.1 43 EegVYTCAGCHAPlYKANHKFKSGCG 68
                255899*******999*****88888 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0076
         DZR  13 rfCseCgtklk 23 
                 ++Cs+Cg +l 
  CCE27343.1  95 IVCSNCGGHLG 105
                 56777777765 PP

>> Importin_rep  Importin 13 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.9e-05      0.12       2      24 ..       3      26 ..       2      27 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.9e-05
  Importin_rep  2 YPsdeeyssWsad.eKEqFRcYRq 24
                  YP++ + ++W a  +KEqFR+ Rq
    CCE27343.1  3 YPDQRSDTEWQAVlNKEQFRILRQ 26
                  9999999***87449******998 PP

>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.6   0.00017      0.51       3      70 ..      47     109 ..      45     132 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
                   EEETTTS-EEEECCCEEEEECCCEEEES---CCCEEEECEEEETTSTTEEEEEEEETTT--EEEEEEE CS
  Yippee-Mis18   3 fqCkkCktilgdslqlvsegralnivvlkkvtrnvvvgkelvtdeegkctystlsCkgCnsvlGwkYk 70 
                   + C+ C+++l  +++ + +g      +++++  +v  ++            +++ C++C+ +lG ++k
    CCE27343.1  47 YTCAGCHAPLYKANHKFKSGCG-WPAYFDSIPGAVKRHEDRAFG----MLRTEIVCSNCGGHLGHVFK 109
                   5677777777777777776666.445566676666655555555....67789************996 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.081   2.4e+02      15      25 ..      42      52 ..      34      57 .. 0.82
   2 ?    8.3   0.2   0.00053       1.6      17      26 ..      92     101 ..      91     104 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.081
                  TSTTCEEESSS CS
  TF_Zn_Ribbon 15 pergelvCtdC 25
                  pe+g ++C  C
    CCE27343.1 42 PEEGVYTCAGC 52
                  788999***99 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00053
                   TTCEEESSSS CS
  TF_Zn_Ribbon  17 rgelvCtdCG 26 
                   r+e+vC++CG
    CCE27343.1  92 RTEIVCSNCG 101
                   789******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1048.15
//
Query:       CCE27344.1  [L=157]
Description: uncharacterized protein CPUR_00818 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1205.78
//
Query:       CCE27345.1  [L=520]
Description: related to myo-inositol transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.5e-112  376.7  17.4   1.9e-112  376.5  17.4    1.0  1  Sugar_tr    Sugar (and other) transporter
    7.1e-29  100.8  24.4    7.1e-29  100.8  24.4    2.1  2  MFS_1       Major Facilitator Superfamily
    1.2e-08   34.0  22.1    8.3e-08   31.2   0.2    3.6  4  MFS_2       MFS/sugar transport protein
    3.5e-06   25.7   5.5    3.5e-06   25.7   5.5    1.7  2  TRI12       Fungal trichothecene efflux pump (TRI12)
     0.0048   15.7   3.1      0.041   12.7   0.2    2.4  2  LacY_symp   LacY proton/sugar symporter
  ------ inclusion threshold ------
       0.51    9.1  13.7      0.085   11.7   0.2    3.1  3  MFS_1_like  MFS_1 like family
        6.6    6.6   8.1        0.2   11.5   0.4    2.3  3  Lig_chan    Ligand-gated ion channel


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.5  17.4  7.3e-116  1.9e-112       2     450 ..      48     512 ..      47     514 .. 0.91

  Alignments for each domain:
  == domain 1  score: 376.5 bits;  conditional E-value: 7.3e-116
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 ++ a ++gllfgYdtgvi+a+l +++       ++  +s +      ++i+s++++ a++ s f++ l+dr+GRk ++l a +lf+igav+qaa+    
  CCE27345.1  48 TVAAGISGLLFGYDTGVISATLVSIGR---ALSNRDLTSLD-----KSIITSSTSLFALVASPFSSVLADRLGRKRVILYADILFIIGAVIQAACS--- 135
                 56677899******************3...33344444444.....48************************************************... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.adgwrillglqlvpallllilllflPESPryl 198
                 sv  ++vgR +vG +vG+as +vP+yi+E+Ap+++Rg+lv+ y ++i++G++va+++g++++++++  +gwr+++g+ ++pa l++ +++++PE+Pr+l
  CCE27345.1 136 SVPTMVVGRCVVGAAVGAASFVVPLYIAELAPASYRGRLVTAYVMFISLGQVVAYVMGWVFSTYGSpGTGWRWMVGIGAMPAALQATIIVLMPETPRWL 234
                 *************************************************************9999999******************************* PP

                 HHTT-HHHHHHHHHHHHHC...........HHHHHHHHHHHHHHHHHHH.................HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrge...........edadrelaeekdsleaeqeee............kaswkellssktvrqrlligvvlqifqqltGinaim 274
                 v++g+ +eak v+++++g             d ++e+++e +s       +               w+el+++ ++r++l+i+++lq +qql+G n++m
  CCE27345.1 235 VKVGRSSEAKFVIQRIDGGvmgsadalatlRDIEMEVQQEEES-------RhlrnqqpskwkwLGGWRELVREGKNRRALTIACLLQGLQQLCGFNSLM 326
                 ***************7777666655555444444455444444.......2444555688888889999999978************************ PP

                 HHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS............CHHHHHHHHHHHHH CS
    Sugar_tr 275 yysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks.........kaasivaivfialfial 362
                 y+s tif  +g++++ l+++ v v+nf++t+va+ lvdr+GRR++ll ++ +m++ ++  +     l +++++         kaa++v+++ i+l++a 
  CCE27345.1 327 YFSATIFLVVGFDNPTLTSLTVAVTNFLFTLVALGLVDRIGRRRVLLYSIPFMIVGLLSTAwgFSSLSIKDTQpgtplqpgaKAAAYVILTSIMLYVAS 425
                 ************************************************************98656666666669999********************** PP

                 HHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGG CS
    Sugar_tr 363 falgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeiee 450
                 +a+g+g vpw+  sElfp+svRs+++ ia+ +nw anf+i+l+f  +++a+g +++f ++a+++ +++  v+  +pet+g++lee ++
  CCE27345.1 426 YAVGLGNVPWMQ-SELFPLSVRSLGSGIATGTNWSANFVIGLTFLPLMDALGPPWTFTLYACICGVGYGLVWRIYPETAGLSLEEATA 512
                 ***********9.************************************************************************876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8  24.4   2.8e-32   7.1e-29       3     298 ..      53     409 ..      51     438 .. 0.78
   2 ?    2.3   6.4     0.025        65     111     179 ..     438     502 ..     416     518 .. 0.73

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 2.8e-32
       MFS_1   3 laaflsalarsilgpalplalaedlg...ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGl 97 
                 ++++l +++ ++++++l   ++++l    ++    +++++  +l+a+vas++ ++l+dr+Gr+rv+l + +lf++g+++ + a ss+++++v+r++ G+
  CCE27345.1  53 ISGLLFGYDTGVISATLV-SIGRALSnrdLTSLDKSIITSSTSLFALVASPFSSVLADRLGRKRVILYADILFIIGAVIQA-AcSSVPTMVVGRCVVGA 149
                 678899999999999999.999998866666777888***************************************44444.45*************** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee.... 188
                 + ga+  ++  +ia+++p + rgr +  + +++slG +++++ g +++++++    Wr++  i a  ++l + + ++l+pe+p+   ++    e     
  CCE27345.1 150 AVGAASFVVPLYIAELAPASYRGRLVTAYVMFISLGQVVAYVMGWVFSTYGSpgtgWRWMVGIGAMPAALQATI-IVLMPETPRWLVKVGRSSEAkfvi 247
                 ****************************************888888887777********99999999998662.377777777666666666669*** PP

       MFS_1 189 ...................................kgtgpaplvp..awkallkdpvlw.illialllf....ffgfsglltllplylqevlglsglll 245
                                                    +++ + +     +w++l++      +l ia+ll      +gf++l++++ ++   v g+++  l
  CCE27345.1 248 qridggvmgsadalatlrdiemevqqeeesrhlrnQQPSKWK--WlgGWRELVREGKNRrALTIACLLQglqqLCGFNSLMYFSATI-FLVVGFDNPTL 343
                 ****************99999999988888777554444444..2558999988883323233333333355588888888888885.77777773366 PP

       MFS_1 246 aglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt................s 298
                 ++l++a++ +++    l+a  l+dr+grrr ll +++++++++l+ a+   +                +
  CCE27345.1 344 TSLTVAVTNFLF---TLVALGLVDRIGRRRVLLYSIPFMIVGLLSTAWGFSSlsikdtqpgtplqpgaK 409
                 666677777777...8899999**************************999877776666666666541 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.025
       MFS_1 111 adwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllllpeepper 179
                 +++fp + r+++ g++++++  +  ++g  + +l+  +lg +++f + a ++ ++  l  ++    +pe 
  CCE27345.1 438 SELFPLSVRSLGSGIATGTNWSANfVIGLTFLPLMD-ALGPPWTFTLYACICGVGYGL--VWR--IYPET 502
                 678999999999999998776666588888888776.999999999999999999333..333..33333 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   2.3   4.7e-06     0.012     269     341 ..      94     164 ..      82     171 .. 0.83
   2 ?    1.3   2.3     0.039     1e+02     143     191 ..     178     226 ..     168     233 .. 0.79
   3 !   31.2   0.2   3.3e-11   8.3e-08     200     327 ..     277     422 ..     256     436 .. 0.77
   4 ?   -3.2   0.2      0.87   2.2e+03     296     331 ..     460     495 ..     453     502 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.7e-06
       MFS_2 269 tisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmlad 341
                  + al+++p+ ++la rlg+k+++l + +l i++ v+  +   s++ +++v   ++g +vg+a ++++  +a+
  CCE27345.1  94 SLFALVASPFSSVLADRLGRKRVILYADILFIIGAVIQAAC--SSVPTMVVGRCVVGAAVGAASFVVPLYIAE 164
                 56689******************999999999888877777..888899999999999999988888777776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.039
       MFS_2 143 svlggvlaailafllvlilgglkserkgylifaliialLmllgviivvl 191
                  v++  l+ ++a+++  ++++++s  +g+++++ i+a+ ++l + i+vl
  CCE27345.1 178 YVMFISLGQVVAYVMGWVFSTYGSPGTGWRWMVGIGAMPAALQATIIVL 226
                 455666788888888888888999************9877777766665 PP

  == domain 3  score: 31.2 bits;  conditional E-value: 3.3e-11
       MFS_2 200 rkkekteqkeklslleqlkevfrnra.flillllfllaalalgvlnglllYyltyvlg..ngsaasvfllvvtisallgiplwqplakrlgkkntyllg 295
                  +  +++q++k ++l++++e+ r+ +  ++l +++ll+ l ++++++ l+Y+   +      ++ ++ +l+v + ++l+++++  l+ r+g++++ l +
  CCE27345.1 277 SRHLRNQQPSKWKWLGGWRELVREGKnRRALTIACLLQGLQQLCGFNSLMYFSATIFLvvGFDNPTLTSLTVAVTNFLFTLVALGLVDRIGRRRVLLYS 375
                 45668999************999865156677789*****************876544423334455556678999*********************** PP

       MFS_2 296 alltivllvlvlll...............qpsnlllflvllviagfg 327
                 + ++iv+l+ + +                qp+  ++++v+l+ +++ 
  CCE27345.1 376 IPFMIVGLLSTAWGfsslsikdtqpgtplQPGAKAAAYVILTSIMLY 422
                 ********998887777888887777777555555555555555544 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 0.87
       MFS_2 296 alltivllvlvlllqpsnlllflvllviagfgvgva 331
                 a ++i l++l+l+   +  ++f++ + i g+g+g+ 
  CCE27345.1 460 ANFVIGLTFLPLMDALGPPWTFTLYACICGVGYGLV 495
                 555566666666666666666666666667766654 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   5.5   1.4e-09   3.5e-06      98     223 ..     104     234 ..      34     254 .. 0.80
   2 ?   -1.3   0.1      0.21   5.3e+02      81     122 ..     342     386 ..     332     438 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.4e-09
       TRI12  98 mgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpag.asplfvgelm..snktkflg..llivsipvvvtsglspylgqrlai 191
                    l+dr+gr+ +++ + il ++ga++ ++++ + t++    ++g a g a    pl++ el   s + +++   ++ +s+  vv   ++  +    + 
  CCE27345.1 104 SSVLADRLGRKRVILYADILFIIGAVIQAACSSVPTMVVGRCVVGAAVGAASfVVPLYIAELApaSYRGRLVTayVMFISLGQVVAYVMGWVFSTYGSP 202
                 45799********************************************997468*******7335566666522455677777777778788888888 PP

       TRI12 192 qgswrwifyiyiitsaiavllivvwyyppsfa 223
                    wrw++ i  + +a+  ++iv+    p + 
  CCE27345.1 203 GTGWRWMVGIGAMPAALQATIIVLMPETPRWL 234
                 888******************99987777665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.21
       TRI12  81 slfstlwttgqavsilvmgrltdrfgrrpfvilt...hilglvga 122
                 +l s   ++ + +  lv   l dr+grr +++ +    i+gl+ +
  CCE27345.1 342 TLTSLTVAVTNFLFTLVALGLVDRIGRRRVLLYSipfMIVGLLST 386
                 555555555555666777779999999986655411145555544 PP

>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   1.6e-05     0.041      38      86 ..      79     126 ..      67     197 .. 0.82
   2 ?    3.4   0.2      0.01        27     270     308 ..     350     388 ..     317     396 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.6e-05
   LacY_symp  38 lglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvl 86 
                  +l+  +  i+ s  slf+++  p+  ++ d+lG k+ +l++  +l+++
  CCE27345.1  79 RDLTSLDKSIITSSTSLFALVASPFSSVLADRLGRKRVILYA-DILFII 126
                 5689999***************************88777765.444444 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.01
   LacY_symp 270 llnalimfiaplivnriGaknalliagvimsvrilgsaf 308
                 + n l  ++a  +v+riG +  ll +   m v +l++a+
  CCE27345.1 350 VTNFLFTLVALGLVDRIGRRRVLLYSIPFMIVGLLSTAW 388
                 333344444445566666666666666666666666655 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   3.3e-05     0.085      26      74 ..      76     124 ..      56     134 .. 0.83
   2 ?   11.3   2.8   4.5e-05      0.12     279     374 ..     103     196 ..      98     208 .. 0.90
   3 ?    0.6   3.5     0.079     2e+02     194     309 ..     222     388 ..     186     468 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.3e-05
  MFS_1_like  26 lkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslll 74 
                 l++++l+  +  iit+   l++++++p+ +vlaDr+g++  ++ + +l+
  CCE27345.1  76 LSNRDLTSLDKSIITSSTSLFALVASPFSSVLADRLGRKRVILYADILF 124
                 78899999999**************************988776655544 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.5e-05
  MFS_1_like 279 faeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllw 374
                 f++ l ++lG  ++++ a +++i+  ++ a+++++  +++     g+++g+   ++  y++++ap s+++++   ++++ ++lG+ +  ++G  ++
  CCE27345.1 103 FSSVLADRLGRKRVILYADILFIIGAVIQAACSSVPTMVVGRCVVGAAVGAASFVVPLYIAELAPASYRGRLVTAYVMF-ISLGQVVAYVMG-WVF 196
                 567899**********************************************************************998.899999866655.555 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.079
  MFS_1_like 194 llvvlilnetekesklkvtksl...................................................qvllnilknpeviifllvalilgmsw 241
                 +++vl+++  ++  k++                                                        ++l++  kn++++++   +  l+ + 
  CCE27345.1 222 TIIVLMPETPRWLVKVGRSSEAkfviqridggvmgsadalatlrdiemevqqeeesrhlrnqqpskwkwlggwRELVREGKNRRALTIACLLQGLQQLC 320
                 444455555566655555533356666666666666666666666666666666666666666666666665544444444444443333333333333 PP

  MFS_1_like 242 gi..ienF.lflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyai 309
                 g+  +  F ++++L  +g+ n +l sl++  +v +  + ++a  l++++G +++l+ ++ ++i+ +l  a+
  CCE27345.1 321 GFnsLMYFsATIFL-VVGFDNPTLTSLTV--AVTNFLFTLVALGLVDRIGRRRVLLYSIPFMIVGLLSTAW 388
                 32102222367788.88888877766543..4556677788999999999999999999988888776665 PP

>> Lig_chan  Ligand-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4     8e-05       0.2      43      95 ..     115     167 ..      83     184 .. 0.88
   2 ?   -1.1   0.1      0.61   1.6e+03      47      84 ..     323     358 ..     281     362 .. 0.69
   3 ?   -3.2   0.2       2.7   6.9e+03      10      23 ..     412     425 ..     409     430 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8e-05
                 HHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    Lig_chan  43 eftlsnslwfslgalvqqGcdesprsvsgRivvavWwffvlillssYtAnLaa 95 
                 ++ l+  + f++ga++q++c+  p+ v gR vv++ + ++ +++  Y+A La 
  CCE27345.1 115 RVILYADILFIIGAVIQAACSSVPTMVVGRCVVGAAVGAASFVVPLYIAELAP 167
                 556677789******************************************95 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.61
                 HHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    Lig_chan  47 snslwfslgalvqqGcdesprsvsgRivvavWwffvli 84 
                  + ++fs ++++  G d  p+ +++  v+++ ++f+l+
  CCE27345.1 323 NSLMYFSATIFLVVGFDN-PT-LTSLTVAVTNFLFTLV 358
                 455666777777666443.32.3333455555566665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.7
                 TXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxx RF
    Lig_chan  10 valilvsivlflve 23 
                 + +il+si+l++ +
  CCE27345.1 412 AYVILTSIMLYVAS 425
                 56788899988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 3661.36
//
Query:       CCE27346.1  [L=252]
Description: probable ubiquitin thiolesterase L3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-51  172.7   0.0    9.7e-51  172.5   0.0    1.0  1  Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 


Domain annotation for each model (and alignments):
>> Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.5   0.0   5.4e-55   9.7e-51       2     208 ..      17     232 ..      16     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: 172.5 bits;  conditional E-value: 5.4e-55
                    --EE--HHHHHHHHHHHT--S...EEEE--S.SH.HHTTS-..--EEEEEEE.----------.....---------..T...TS------STTGH CS
  Peptidase_C12   2 lplEsdPevftelleklGvkg.vqfeevysldde.llaslp..vyglillfkyieeeeeeeer....ekeeeekdeeeeevsekvfFakQtiqnaC 89 
                    +plE++P+vft+l+++lGv+  + f +v+s+dd+ l+a++p  v +li++ +   ++  + e+    ++++++ ++++++ +e v++++Qti naC
     CCE27346.1  17 IPLENNPDVFTSLVHDLGVSAeLGFYDVFSIDDSsLMAHIPrpVFALIFIAPSDMQTAVRLEDgrpkSAKTDDLTYAKSGADEPVMWFHQTIGNAC 112
                    79*****************************999899999555*********5544333333355432222334555588999************* PP

                    HHHHHHHHHHH..STS--.-TTSHHHHHHHHHTTS-HHHHHHHHHT-HHHHHHHTTSC..---SSTHHHHS--EEEEEEEEE.TTEEEEE-TTS.S CS
  Peptidase_C12  90 gtiAlLhvllNlekeaeeielgseLkkfkeftkelspeergealenseeireahnsfasegqteapeeeedvafHFiafvpv.ngklyeLDGlkeg 184
                    gt+AlLh+++N e   + +++gs+L +++e+++ l+p+ r++ + ++  ++eah ++a+ g++eap +e  + +HFiafv+  +g+l+eL+G+ +g
     CCE27346.1 113 GTYALLHSVANGE-ARRFVQEGSVLWHLIEDAAPLTPKARAQGVYDNLALEEAHMRAARLGSSEAPPAEVYAGHHFIAFVKGrDGHLWELEGTADG 207
                    ***********87.56778**********************************************9887777*********889************ PP

                    -EEEEE--T..TTH..HHH.HHHHHH CS
  Peptidase_C12 185 Pidlgeveeeeedl..edavrkviqe 208
                    Pid+ge++ e++d+  e+a+++ +++
     CCE27346.1 208 PIDRGELA-EGDDVlsEEALERGVRR 232
                    *******6.46666566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1889.59
//
Query:       CCE27347.1  [L=1068]
Description: related to actin-interacting protein AIP3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.1e-154  514.0  10.5   5.1e-154  513.3  10.5    1.4  1  AIP3          Actin interacting protein 3
     0.0014   18.7   6.3      0.071   13.1   0.0    4.2  4  DUF1664       Protein of unknown function (DUF1664)
     0.0059   16.3   0.1     0.0059   16.3   0.1    3.4  3  Lectin_N      Hepatic lectin, N-terminal domain
  ------ inclusion threshold ------
      0.052   14.1   1.3       0.25   11.9   0.1    2.9  2  FliL          Flagellar basal body-associated protein FliL
      0.082   12.8   1.0       0.32   11.0   0.3    2.2  2  GNVR          G-rich domain on putative tyrosine kinase
       0.93    9.9   6.1          4    7.9   0.0    3.9  3  Med11         Mediator complex protein


Domain annotation for each model (and alignments):
>> AIP3  Actin interacting protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  513.3  10.5  1.7e-157  5.1e-154       1     408 []     501     943 ..     501     943 .. 0.96

  Alignments for each domain:
  == domain 1  score: 513.3 bits;  conditional E-value: 1.7e-157
                 XXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        AIP3   1 FLqlgskvkKvvleeg...ltiasLrllFvekFaysp..ggedfPeiyiqDpksgvrYeLedlsdvkdrsvLsLniepldevkkhideslaslskelke 94 
                 FLq++skvkK+vl+eg   ++i +L+l+F+ekF++++  +g d+PeiyiqDp+sgvr+eLedl dvkdr+vL+Ln+epldevk+h+d++l++l+k +++
  CCE27347.1 501 FLQYKSKVKKMVLAEGhdeISIGRLQLAFIEKFSWNTqqNGTDLPEIYIQDPVSGVRHELEDLADVKDRTVLVLNVEPLDEVKRHFDDGLSTLTKIVQS 599
                 9*************88888******************88899********************************************************* PP

                 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXX.............................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        AIP3  95 lkssiesqkaslqevserqeeaakekasesla....................kkelkaqlkevqslrrdLavlrqlysefkseikeslselrekakkvk 173
                 +++++++q ++lq+vs+rq+++a+e a+  ++                    +k ++ q  e+q+lrrdLavlrq+ys+f+s++++s+s+lr+ka++vk
  CCE27347.1 600 VQQNVQDQGTTLQRVSDRQQDTAAELARLAANpspapaseggvaaklapgagRKLDAGQAGEIQRLRRDLAVLRQTYSNFQSDVQNSMSALRQKAANVK 698
                 **************************9966669******************99999******************************************* PP

                 ....XXXX.XXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        AIP3 174 ....easlastkkssnrayiekgkkkLseesdklvtkvddLqDlvedlrkDVvqRgvrpskkqlesvakeikkakkelkkleeyiktekpvWkkiWekE 268
                     +a++++++++++ +y+++g+k+L+++sd+lv +vddLqDl+edlrkDVv+Rgvrp ++qle+vak+i++++kelk++ee+++tekp+W+kiWekE
  CCE27347.1 699 tvaaKAAVPDMDGDAGYSYVTNGRKQLNSDSDRLVGQVDDLQDLIEDLRKDVVHRGVRPIPRQLEEVAKDITHLTKELKRMEEFMSTEKPIWTKIWEKE 797
                 9999999******************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXX........XXXXX.XXXXXXXXX.-HHHHHHHHHHHHHT----HHHHHHHHH CS
        AIP3 269 LqkvveeqqfLtlqeeLlaDLkeDlekasevfelveqvveeqekesk........rnkkskarllipepgedlkeakdtvllevralqpdhesRleAie 359
                 L++v++ +++L+l+e+L+ DL++Dl+kase+f+lveq+++eq+k++         r+   ++ l    ++ ++++ak+++l+evralqp+he+RleAie
  CCE27347.1 798 LEDVCQGRDELRLMEDLIIDLRDDLDKASETFTLVEQATKEQMKDNGtgasastaRQF--SRGLSSLGNSLNQSAAKEDLLGEVRALQPNHENRLEAIE 894
                 *********************************************9988877643322..234455677778899************************ PP

                 HHHHHHHTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        AIP3 360 raeklrekelearredefqkELgeFVeekkLkksGGveEverlRkkkde 408
                 raeklr+kel+ r+ +e+ +E+++FV+++kLkksGG+eEver+Rk+kd+
  CCE27347.1 895 RAEKLRQKELQGRQGNEMLREISSFVQDGKLKKSGGFEEVERARKAKDD 943
                 ***********************************************96 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.015        46      92     124 .]     586     618 ..     555     631 .. 0.73
   2 ?    1.3   0.0      0.11   3.2e+02      81     120 ..     661     700 ..     650     704 .. 0.71
   3 !   13.1   0.0   2.4e-05     0.071      55     122 ..     716     781 ..     709     782 .. 0.94
   4 ?   -1.4   0.1      0.78   2.3e+03      35      82 ..     851     893 ..     847     921 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.015
     DUF1664  92 vredlseigedvesvkeaveglesklerieekQ 124
                   ++ls++ + v+sv++ v++ +++l+r++++Q
  CCE27347.1 586 FDDGLSTLTKIVQSVQQNVQDQGTTLQRVSDRQ 618
                 345566666777777777777777777766665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.11
     DUF1664  81 iskeikeevtevredlseigedvesvkeavegleskleri 120
                  ++ ++++++ +r+  s++++dv++  +a ++ +++++++
  CCE27347.1 661 EIQRLRRDLAVLRQTYSNFQSDVQNSMSALRQKAANVKTV 700
                 4577888899999999999999988777777766666655 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 2.4e-05
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 + +++ +++L+s+ dr+  ++d+ ++++++++++v  v+++++ i +++e+v + +++l ++l+r+ee
  CCE27347.1 716 SYVTNGRKQLNSDSDRLVGQVDDLQDLIEDLRKDV--VHRGVRPIPRQLEEVAKDITHLTKELKRMEE 781
                 668899****************************9..79***************************95 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.78
     DUF1664  35 TkrslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeis 82 
                 T r +s  ++s++++l+q      a+k++L  ++  ++ + ++  e++
  CCE27347.1 851 TARQFSRGLSSLGNSLNQS-----AAKEDLLGEVRALQPNHENRLEAI 893
                 5555555566666666553.....456666666666655555554444 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.42   1.2e+03      78     113 ..     579     613 ..     557     629 .. 0.57
   2 !   16.3   0.1     2e-06    0.0059      51     125 ..     663     733 ..     658     748 .. 0.75
   3 ?    0.4   0.3      0.17   5.1e+02      53      99 ..     818     869 ..     815     923 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.42
    Lectin_N  78 lssqggslsekvtsleaklekkqqdlkadhselllh 113
                 l+   ++ ++ +++l   ++  qq+++  + + l +
  CCE27347.1 579 LDEVKRHFDDGLSTLTKIVQSVQQNVQD-QGTTLQR 613
                 4555555555555555555555555542.3333333 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 2e-06
    Lectin_N  51 sqLqreLetLketfsnfssstlaeiqalssqggslsekvtsleaklekkqqdlkadhselllhvkqlvkdLrtLs 125
                 ++L+r+L  L++t+snf s+++  ++al+ ++     +v+++ ak    + d +a +s ++   kql +d   L 
  CCE27347.1 663 QRLRRDLAVLRQTYSNFQSDVQNSMSALRQKAA----NVKTVAAKAAVPDMDGDAGYSYVTNGRKQLNSDSDRLV 733
                 58*****************99999999987655....45556666666666666677766666666666655555 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.17
    Lectin_N  53 LqreLetLketfsnfssstlaeiqalss.....qggslsekvtsleaklekk 99 
                 L+ +L   +etf+ + + t+ ++++  +      +++ s+ ++sl   l++ 
  CCE27347.1 818 LRDDLDKASETFTLVEQATKEQMKDNGTgasasTARQFSRGLSSLGNSLNQS 869
                 7888888888888888888777775544333336666677777776666543 PP

>> FliL  Flagellar basal body-associated protein FliL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   8.5e-05      0.25      21      68 ..     143     190 ..     131     193 .. 0.73
   2 ?   -2.2   0.1       2.1   6.4e+03      56      72 ..     899     915 ..     880     934 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.5e-05
        FliL  21 rylkveitlevadaeleekekepeirdailsllsskta..eelstpegke 68 
                  +l ++++ e ++++le++  +p+ird i++ll + +     l++++gke
  CCE27347.1 143 SILEATLSQEANAESLEKY--LPRIRDIIINLLHGLKRkqHRLRQKQGKE 190
                 4666777777766666655..*************9887224577777777 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.1
        FliL  56 ktaeelstpegkekLke 72 
                  + +el++++g e L+e
  CCE27347.1 899 LRQKELQGRQGNEMLRE 915
                 44566777776666654 PP

>> GNVR  G-rich domain on putative tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   0.00011      0.32       6      46 ..     662     702 ..     658     709 .. 0.79
   2 ?   -1.1   0.0      0.63   1.9e+03       6      37 ..     815     845 ..     811     849 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
        GNVR   6 ilrLtrDvevnteiYtqLlnkaqelevakagtvgnVrivDe 46 
                 i rL rD+ v +++Y ++ + +q+   a   +++nV+ v  
  CCE27347.1 662 IQRLRRDLAVLRQTYSNFQSDVQNSMSALRQKAANVKTVAA 702
                 449***************7777776666699*****98865 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.63
        GNVR   6 ilrLtrDvevnteiYtqLlnkaqelevakagt 37 
                 i+ L  D++ ++e++t + ++a +++++ +gt
  CCE27347.1 815 IIDLRDDLDKASETFTLV-EQATKEQMKDNGT 845
                 678999**********99.5555555555665 PP

>> Med11  Mediator complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0013         4       7      33 ..      72     110 ..      71     237 .. 0.73
   2 ?    0.7   0.4      0.23   6.8e+02      42      87 ..     580     623 ..     574     732 .. 0.74
   3 ?    1.1   0.3      0.17     5e+02       5      67 ..     760     867 ..     760     920 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0013
       Med11   7 LneIDkdIvslLesasealkaLskpp............e 33 
                 L++I+k+++ lL  + e l++L++ +             
  CCE27347.1  72 LSQIEKSVTHLLVATKELLETLTQWSrgqatdtrvsdvY 110
                 99*********************9665555555555550 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.23
       Med11  42 eaqkeafkaatstffstLssvdvrLrrqIyaLeeagiitlessaaa 87 
                 ++ k+ f++  st  + ++sv+ + ++q   L+   +++ ++++aa
  CCE27347.1 580 DEVKRHFDDGLSTLTKIVQSVQQNVQDQGTTLQR--VSDRQQDTAA 623
                 6678888888888899999998888888777777..3333333333 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.17
       Med11   5 qqLneIDkdIvslLesasealkaLskpp.............................................eqepaseseeaqkeafkaatstffst 58 
                 +qL+e+ kdI+ l +++  + + +s+++                                             eq ++++ +++ + a  +++++f + 
  CCE27347.1 760 RQLEEVAKDITHLTKELKRMEEFMSTEKpiwtkiwekeledvcqgrdelrlmedliidlrddldkasetftlvEQATKEQMKDNGTGASASTARQFSRG 858
                 589999999999998876665555555577888877777777777777777777777777777777777777766666666666666666666777776 PP

       Med11  59 LssvdvrLr 67 
                 Lss  ++L+
  CCE27347.1 859 LSSLGNSLN 867
                 666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1491  (0.0831614); expected 358.6 (0.02)
Passed bias filter:                      697  (0.0388756); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.49
# Mc/sec: 6561.81
//
Query:       CCE27348.1  [L=1351]
Description: related to killer toxin insensitive protein 3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.7e-292  972.9   0.0     2e-292  972.7   0.0    1.1  1  IKI3         IKI3 family
  ------ inclusion threshold ------
      0.029   14.6   0.5        2.7    8.3   0.0    3.8  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
       0.97    9.3   3.6         17    5.2   0.1    2.9  3  Clathrin     Region in Clathrin and VPS
        1.5    9.1   4.0        5.9    7.3   1.0    3.6  3  TPR_2        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  972.7   0.0  4.4e-296    2e-292       1     930 [.       1     948 [.       1     949 [. 0.91

  Alignments for each domain:
  == domain 1  score: 972.7 bits;  conditional E-value: 4.4e-296
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX...XXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXX CS
        IKI3   1 MrNlkvlseralkpesesesdlkvlasvfdtesdsilivlssteseaaievqrfekds...evevlasleaeel..eekkdkivsveyladkeelvlal 94 
                 MrNl++++  +++       ++ ++a++++  +d+i++++++t ++  i++ ++ +++   +++ +a ++a+++  e + d++vs++yl+ + +++++l
  CCE27348.1   1 MRNLRNIRLARWS-------HADITAACWNPVTDDIICTIGPTAESSRIQLVSYAESDasaSCTEIAAWDAPSPipELPFDRVVSLQYLNGSGTICIVL 92 
                 6666665554443.......456889*******************9****999999888888899999999988889999******************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3  95 asGdillvtvdsdaeekeveivGsiesGieaaawspdeellalvtgeekvvlmtrdfepisetsldaddlkeskhvsvgwGkkeTqfkgkeakaaekel 193
                 ++Gdi++v+  ++ e  +veivGsi++Gi+aa+wspde+ll+++t+ ++ ++m+ +f+ ++e++++a+dlk+skhvsvgwGkkeTqf+g++aka    l
  CCE27348.1  93 EGGDIITVQGPDSSEPGQVEIVGSIDAGIAAARWSPDEDLLVVATNAGTAIFMSATFDLVAEVTMTAEDLKASKHVSVGWGKKETQFQGRGAKA----L 187
                 ********88889999*****************************************************************************9....9 PP

                 XXXXXX..XXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 194 rdptlp..vdegkls.lddskvtIsWRGDgeYfavssleaetgerralrvyeregaLdsvsekvdgleeaLaWrPsGsliAstqrkkdksldvvfFErN 289
                 rdpt+p  vdeg     +d+++tIsWRGDg Y+a++s+  + ++rr++rvy+r+g+Lds+se+vdgle+ L+WrPsG+l+A +qr +d+  dvvfFErN
  CCE27348.1 188 RDPTIPerVDEGLPGaCEDGSTTISWRGDGGYVAINSV--QDDSRRVIRVYSRQGELDSASEPVDGLEGPLSWRPSGNLMAGIQRLSDR-IDVVFFERN 283
                 ************9999**********************..55568********************************************.********* PP

                 XXXXXXXXXXX.XXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX CS
        IKI3 290 GLrhgefslrlekeeeev....qsLaWsadSevLavrledrvqlwtisNyhWYLKqelrysasegveevkWdpekpltLlvltesgkievvdfafetav 384
                 GLrhg+++lr  + ++ v      L+W+adS+vLav l d vqlwt++NyhWYLK+e+++    g+++++W+pek+l++  +++ ++i  v+ +f+ta+
  CCE27348.1 284 GLRHGQYTLRS-PGKNLVdnadIRLEWNADSTVLAVTLGDLVQLWTMGNYHWYLKREISVV--PGLSHLSWHPEKALRFATVST-SEIMSVEEVFHTAR 378
                 **********7.555555566699**********************************955..556679*************99.99999999****** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XX CS
        IKI3 385 setssendvgtvaViDgkklllTplslanvPPPmsareleleaavndvafsksnsktlavllsdgelaiaeldlekakaskepklvsevsknstasesv 483
                 ++  +++d+g vaViDg++++lT +++anvPPPms +++++e++v dvaf ++n++ +a+l+++  + i+++++++   s +p+l+ +vs   ++s+ +
  CCE27348.1 379 GSCLPPHDNGAVAVIDGENVKLTAFRTANVPPPMSLFDITTESPVADVAFGRQNTS-FAALHQKA-IDIYQWPMKNGR-SIKPTLKVSVSF--MSSNLS 472
                 ******************************************************99.99999887.*****9988666.677777777766..466667 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXX...........XXXXXXXX CS
        IKI3 484 evalaklkqlafinddtllvlassaenlseillvev.ddaeekvlvssstslekvvlakssadast..svvvetadGkvl...........elsaeeek 568
                 ++       +  ++d  + +++s++   + + l ++  da+  v+ ++ ++  kv ++ s  ++++  +++ + ++G+++           + +++e++
  CCE27348.1 473 DCGRLVPLRIWSVSDGIFCCICSQE--GQGLGLRQFvIDADAGVIREVPDRDGKVRVSNSTYEDAKmmKAYGQDVQGRLCkytpveipvsgNPESSEKQ 569
                 7777777777777888888888876..6666666664455555555555555555555544444334899***************99887744444444 PP

                 XXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXX CS
        IKI3 569 eei....tklpqlcrdfrvlqveeeeeklllvgLtsrgkLyankkllasdvtSfavtdsfLlfttvshvlkfvdlksevkdlevveksreesaderirq 663
                   i     k+p+  ++f++ +v++ +  l+++g +++g+Lyan++lla+++tSf vt s+L+ftt++h++k v+l +++++l+v e++ e+  der+r+
  CCE27348.1 570 AIIeetgLKFPTHLPWFEMSKVHDGS--LVAFGQSRNGHLYANSRLLAKNCTSFVVTPSHLIFTTSNHFVKYVHLAATAQELQVPEDDPEN--DERCRS 664
                 4447779*****************99..9*************************************************************5..****** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 664 vErGsrlVavvpskasvvLqmpRGNLEtiypriLvLaavrkalkakrYkeAfklcrthRidlnllvDydpelFlenveaFvrqvkkvdylnlFlssLke 762
                 vErGsrlV ++p+++s+vLqmpRGN+Eti pr++v a++r+++++k+Y  Af +crt+R+d+n+l+D++p++Fl+nv  F++q+++v+y++lFlssL+e
  CCE27348.1 665 VERGSRLVVAIPTNMSIVLQMPRGNVETIFPRAMVVAGIRSLIEDKNYARAFSCCRTQRVDMNILYDHQPTQFLANVGLFLDQLNDVSYIDLFLSSLRE 763
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 763 eDvtktlYketls..................ktkaskeakakakekdtkesKvnkvcdairkalekeeesekyllailtayvkkeppeleaaLkliasl 843
                 eDvt+t+Yk+t +                   +++++ ++   + ++++  Kvn++cdai+kal  ++++ ++l++ +ta+v+k+pp+l+++L l+a l
  CCE27348.1 764 EDVTETMYKDTKRpraqldgeehshnspspaINSTHSASSPPPTCATSSIPKVNTICDAILKAL--QTRKATHLQNTITAHVCKSPPALDDGLTLVAGL 860
                 *************************999877334444444444455556679************..5999****************************9 PP

                 X...XXXXXXXXXXXXXXXX---HHHHHHHHTT-HHHHHHHHHCTT--GGGTHHHHHHHHCS-HHHHHHHHHHHHT-HHHHHHHHHCS CS
        IKI3 844 kee.deeqaeealkyllfLvdvnklYdvALGlYdlelallvAqksqkDPkEYLpfLqeLkkleelrrkfeIDdyLkryekAlehlvea 930
                 ++e de+ ae+a+++++fLvdvn+lY++ALGlY+lelallvAq+sq+DP+EYLpf+q+L++ ++lrr+f IDd+L+r +kAl+ l+++
  CCE27348.1 861 MQEnDEKVAEKAVEHICFLVDVNRLYEHALGLYNLELALLVAQQSQRDPREYLPFIQDLHAHPDLRRQFVIDDHLGRRSKALTYLHAL 948
                 98768999***************************************************************************99976 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0006       2.7      40      90 ..     120     173 ..     114     175 .. 0.67
   2 ?   -0.9   0.0      0.45     2e+03      42      69 ..     209     237 ..     202     249 .. 0.81
   3 ?   -0.6   0.0      0.38   1.7e+03      43      54 ..     255     266 ..     221     278 .. 0.82
   4 ?    0.1   0.0      0.23     1e+03      43      59 ..     306     322 ..     289     342 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0006
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek....avtclgWg 90 
                   + + +W+pd+ lL+va++ g+  +++a   ++v ++++++e+    + +++gWg
   CCE27348.1 120 GIAAARWSPDEDLLVVATNAGTAIFMSATF-DLVAEVTMTAEDlkasKHVSVGWG 173
                  577789************999977776654.444444444443345555566665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.45
  ANAPC4_WD40  42 rsLaWkpdgklLav.aysdgevrlldaes 69 
                  + ++W+ dg   a+ +++d + r++ ++s
   CCE27348.1 209 TTISWRGDGGYVAInSVQDDSRRVIRVYS 237
                  5799*****99998346777778887776 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.38
  ANAPC4_WD40  43 sLaWkpdgklLa 54 
                   L+W+p+g+l+a
   CCE27348.1 255 PLSWRPSGNLMA 266
                  489******998 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.23
  ANAPC4_WD40  43 sLaWkpdgklLavaysd 59 
                   L+W+ d ++Lav   d
   CCE27348.1 306 RLEWNADSTVLAVTLGD 322
                  599**********9876 PP

>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.89     4e+03      77     108 ..     942     973 ..     935     978 .. 0.53
   2 ?    5.2   0.1    0.0039        17      77     127 ..     986    1038 ..     982    1046 .. 0.83
   3 ?    4.0   0.1    0.0094        42      79     133 ..    1053    1108 ..    1047    1112 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.89
                 HHHHHT-SSHHHHHHHHHTTXTHSSHSSXSSS CS
    Clathrin  77 aklcekadlyeeavilykkinefkkaisllkk 108
                 + ++   d ++e++   +k+  +++a+ ++++
  CCE27348.1 942 LTYLHALDAFDELCSYTTKHALYQDALRIYRY 973
                 44444444555555555555555555555544 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0039
                  HHHHHT-SSHHHHHHHHHTTXTHSSHSSXSSSSHC..SCHHHHTTTTTXXSHH CS
    Clathrin   77 aklcekadlyeeavilykkinefkkaisllkklkd..fddaieyaakvsnpel 127 
                  a+++e +  y+ea + +  +++++ka+s+++  ++  +++ + +a+++++p l
  CCE27348.1  986 AEYLESRSSYREAGLAFESLQNYAKATSCYRAAGAacWQECLYTAQQQKSPSL 1038
                  799*************************9777654338888888888888876 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0094
                  HH.HT-SSHHHHHHHHHTTXTHSSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHH CS
    Clathrin   79 lc.ekadlyeeavilykkinefkkaisllkklkdfddaieyaakvsnpelweklle 133 
                   + e +d+   a i++ +++  + ai++l k  +f +ai+ +++   pel+e +++
  CCE27348.1 1053 ALwESKDYSAAATIHLEHLSSLETAIKCLCKGYLFAEAIRLVVRHARPELLESAVD 1108
                  553566677778889999**********88889*****************998875 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.3   1.5e+04      11      25 ..     706     720 ..     705     721 .. 0.75
   2 ?    7.3   1.0    0.0013       5.9       4      27 ..     995    1018 ..     993    1021 .. 0.92
   3 ?   -0.7   0.0      0.45     2e+03       6      21 ..    1049    1064 ..    1044    1069 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.3
       TPR_2  11 yyklgdyeeAleafe 25 
                 +++ ++y++A  +++
  CCE27348.1 706 LIEDKNYARAFSCCR 720
                 566789999988875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0013
       TPR_2    4 lynlGlayyklgdyeeAleafekA 27  
                  + + Gla + l++y++A  ++++A
  CCE27348.1  995 YREAGLAFESLQNYAKATSCYRAA 1018
                  6788******************98 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.45
       TPR_2    6 nlGlayyklgdyeeAl 21  
                   l++a+++++dy  A+
  CCE27348.1 1049 SLADALWESKDYSAAA 1064
                  599*********8886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.47
# Mc/sec: 8650.20
//
Query:       CCE27349.1  [L=383]
Description: uncharacterized protein CPUR_00823 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-66  225.2  18.0    1.7e-65  221.6  18.0    2.1  1  DUF3984   Protein of unknown function (DUF3984)


Domain annotation for each model (and alignments):
>> DUF3984  Protein of unknown function (DUF3984)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.6  18.0   9.4e-70   1.7e-65       1     331 []      14     308 ..      14     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 221.6 bits;  conditional E-value: 9.4e-70
     DUF3984   1 RkrRSstnLnhlsLaPLtsrlPlddddedgeeedyfssakeesessseptaattSylssrSvPtTPrllShsrsasrtrlhsRsksatg....kslstt 95 
                 Rk+RS tnLnhlsLaPLt +lP+dd        d++ +       ++  ++ +  yl+++S+P+TPrllS+  ++ r+r+++R++s +g    ks+s+t
  CCE27349.1  14 RKNRSTTNLNHLSLAPLTVKLPIDDS-------DVLPDP------AAMVSHSHITYLQGKSAPATPRLLSRGSATPRSRSQHRTSSIPGgplyKSQSST 99 
                 9************************9.......444222......2233456678****************99999*************9*999***** PP

     DUF3984  96 eLqskksasplhhqrskekkksktrrrrkeasktasekeadsewllRaGlalasstREekGqsWLvkrasSTsLvserelarerekasrersk.sesrs 193
                  L + ++    h++++k+k+  +t+rrr+  +++++++  ds+wllRaG++l+s++RE kGq+WL +r+sSTsL++ r+l++e  +++  r++  +s++
  CCE27349.1 100 VLSATGT---GHSHAKKSKSGISTPRRREAFGNGNEHN--DSDWLLRAGALLTSEAREYKGQAWLLSRQSSTSLAGVRDLEEEAFERELARERhVASHR 193
                 **99977...5555555577777888888888888776..9***********************************88888877766666666234455 PP

     DUF3984 194 rsrrssls......tPaalSRrgSrshsaskrgsRvdlamTplesrrtkaessesrsteeseeddee.lvPDFvdedirlEmaeleqeelseddessvs 285
                 +srr+s        +P   SR+ Sr hs++   sR  l  Tp+e      +    +++  +++dd   ++PDFv++d+rlE  e ++            
  CCE27349.1 194 ASRRGSSVmadddaSPPNGSRLHSRKHSTA--DSRSYL-GTPMEY-----SGVYGGDSYFPSHDDVGaVGPDFVNLDERLEELEADTT----------- 273
                 55555555899999999**********777..8***88.9*****.....344555666666666556*************8777433........... PP

     DUF3984 286 assdsesdeedeedEaevrrLvrergfGlGsWidrlvewtlfsvee 331
                            + dEa+vrrLvr+  +G GsWi ++++w+lf+vee
  CCE27349.1 274 -----------QYDEATVRRLVRRGTAGKGSWISNVIGWSLFKVEE 308
                 ...........689******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2981.51
//
Query:       CCE27350.1  [L=164]
Description: related to multistep phosphorelay regulator 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-10   39.9   0.0      6e-10   39.3   0.0    1.3  1  Hpt       Hpt domain


Domain annotation for each model (and alignments):
>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   3.3e-14     6e-10       6      79 ..      48     122 ..      43     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 3.3e-14
                 HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH...HCTSCHHHHHHHHHHHHHH CS
         Hpt   6 fleeaeelleqleqaldqedlqelaraaHtLKGsagmlGltelaelahelEdlld...ragelelepellealkall 79 
                 f+ +aee + ++++a++++dl++l ++ H LKGs+++lGl ++++ +++++ + +    +g++e++ +l   l++ +
  CCE27350.1  48 FFTQAEETFIKMDTAIEEKDLDQLSELGHFLKGSSATLGLIKVRDGCEKIQRYGKnenLDGSEEPDSDL--CLQRII 122
                 999*************************************************77664444444444444..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1193.86
//
Query:       CCE27351.1  [L=431]
Description: uncharacterized protein CPUR_00825 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0003   19.8   5.9    0.00056   18.9   5.9    1.4  1  CALCOCO1       Calcium binding and coiled-coil domain (CALCOC
    0.00058   19.4   8.6    0.00058   19.4   8.6    1.8  2  Golgin_A5      Golgin subfamily A member 5
     0.0094   16.1  10.3     0.0099   16.0   6.4    2.2  2  UPF0242        Uncharacterised protein family (UPF0242) N-ter
  ------ inclusion threshold ------
       0.33   11.2   3.7         12    6.2   0.1    2.7  3  DUF722         Protein of unknown function (DUF722)
       0.43   10.9   6.0        3.9    7.8   5.0    2.4  2  DUF641         Plant protein of unknown function (DUF641)
       0.45    9.0   6.5       0.64    8.4   6.5    1.1  1  Peptidase_S64  Peptidase family S64
       0.64    9.8   8.3       0.23   11.2   5.5    1.6  2  DASH_Spc34     DASH complex subunit Spc34
        1.9    8.9   6.5        7.6    7.0   0.4    3.5  3  Csm1_N         Csm1 N-terminal domain
        3.2    8.0  14.3       0.17   12.1   2.9    3.0  3  TMF_TATA_bd    TATA element modulatory factor 1 TATA binding
        4.4    7.3  14.3        1.1    9.3  10.7    1.9  1  FlxA           FlxA-like protein
        5.1    7.3  28.9       0.77   10.0  20.0    3.1  2  ATG16          Autophagy protein 16 (ATG16)
        5.5    7.4  13.7        7.6    6.9   2.7    2.7  3  Fez1           Fez1
        5.6    6.7   8.4       0.59    9.9   2.4    2.2  3  DUF724         Protein of unknown function (DUF724)
        6.4    6.0   6.9         13    5.0   6.9    1.4  1  FAM76          FAM76 protein
        6.9    6.9  10.1          4    7.6   5.9    2.3  2  Fib_alpha      Fibrinogen alpha/beta chain family
        9.6    6.6  10.9        4.3    7.7   1.1    3.2  3  Tup_N          Tup N-terminal


Domain annotation for each model (and alignments):
>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   5.9     5e-07   0.00056      63     162 ..      48     151 ..      29     165 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5e-07
    CALCOCO1  63 eykrdreeldrerkelesrveelkeelkesrekveel....eekqkelerlseelaeeksalleakeesearirELEeDiktltqralekEteLeRlke 157
                   +++ +  d++ + l+++++ lk+ l+++++ + +     ++k++ l++   ++  + ++l+++++ ++++i  L +D + l + a+e+++e++Rl+ 
  CCE27351.1  48 APNTETTTKDKHITSLHQELSLLKQTLTHLTQTTSQTasfwQTKHRTLHQQFLHTDTQLRVLTAEAATQTTQITALQQDRNQLRREAVERDAEMDRLRG 146
                 34556667788889999999999999999999666551111456666666666677788899999999******************************* PP

    CALCOCO1 158 rakka 162
                 +++ +
  CCE27351.1 147 QVRDM 151
                 *9965 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   8.6   5.2e-07   0.00058      29     159 ..      26     152 ..      23     167 .. 0.85
   2 ?   -1.5   0.7       1.2   1.3e+03     200     256 ..     254     310 ..     250     317 .. 0.48

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.2e-07
   Golgin_A5  29 sLkegsgeeglesstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryle 127
                 s++ ++++ + +++++++ ++ + + e  +  + +++l+q+++ l++ l +l + +++ a+ ++ + + l++q+ +   + + + ae + ++ ++ +l+
  CCE27351.1  26 SVRAANTTASPDTANEQHNNYTAPNTETTTKDKHITSLHQELSLLKQTLTHLTQTTSQTASFWQTKHRTLHQQFLHTDTQLRVLTAEAATQTTQITALQ 124
                 5667777777788889999999999*************************************************999999999************9988 PP

   Golgin_A5 128 eelvrskatlqsrikdrekeieklrnqlttks 159
                 ++     ++l+ +  +r++e+++lr q+   +
  CCE27351.1 125 QDR----NQLRREAVERDAEMDRLRGQVRDMK 152
                 775....578888899***********96542 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
   Golgin_A5 200 LeRleqqikevqseaengtalnlesvsdeegsrlrkvpsllsesesqlegvlrkvkk 256
                 ++R  q  + +++  + ++++n   +s+    r   ++ l  e++ ++e v+ + k+
  CCE27351.1 254 VQRFHQMEETLSQLVRSEESINHWRASTLALLRRDAIQNLQDETDVHIEEVTLRTKR 310
                 444444444444444444444444444444444444555555555555555555444 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   6.4   8.8e-06    0.0099      69     183 ..      38     152 ..      22     155 .. 0.78
   2 ?    1.4   0.1      0.26     3e+02      80     112 ..     270     311 ..     228     318 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.8e-06
     UPF0242  69 kleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqrsvlek 167
                 + +e++++ t+ + + +tk++++  l +e   Lk+ l + +++  +     q  +  l++     + +++ l ++ a +++++  +q+  +++r +  +
  CCE27351.1  38 TANEQHNNYTAPNTETTTKDKHITSLHQELSLLKQTLTHLTQTTSQTASFWQTKHRTLHQQFLHTDTQLRVLTAEAATQTTQITALQQDRNQLRREAVE 136
                 4556677777777777777777777777777777777777776666666555555555555557788899999999*********************** PP

     UPF0242 168 rqdqieqLeskVrDln 183
                 r+++  +L  +VrD++
  CCE27351.1 137 RDAEMDRLRGQVRDMK 152
                 **************96 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.26
     UPF0242  80 ldeglktkee.........aleelqeeeeeLkeeldakeeel 112
                  +e+++  +          a+++lq+e++   ee+  +++ +
  CCE27351.1 270 SEESINHWRAstlallrrdAIQNLQDETDVHIEEVTLRTKRI 311
                 333333333233333333478888888887777777776655 PP

>> DUF722  Protein of unknown function (DUF722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.019        22      27      87 ..      22      82 ..      15     102 .. 0.83
   2 ?    6.2   0.1      0.01        12      43      86 ..     121     162 ..     100     170 .. 0.80
   3 ?   -2.5   0.0         5   5.6e+03      61      79 ..     250     268 ..     249     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.019
      DUF722 27 ryitrekvderiaygGtaenkesrvldkellikEeDkeliklkdqkellsellevlteeek 87
                +y+  ++  + +a+  ta+++ ++    ++    +Dk +++l++++ ll++ l  lt++  
  CCE27351.1 22 NYLVSVRAANTTASPDTANEQHNNYTAPNTETTTKDKHITSLHQELSLLKQTLTHLTQTTS 82
                6888899999999999999998887777777789******************999999854 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.01
      DUF722  43 taenkesrvldkellikEeDkeliklkdqkellsellevlteee 86 
                 ta +++ + l +e++  E D e+ +l+ q   +++++ + t++e
  CCE27351.1 121 TALQQDRNQLRREAV--ERDAEMDRLRGQVRDMKTFVSMSTRTE 162
                 4555677779*****..*******************99888877 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 5
      DUF722  61 eDkeliklkdqkellsell 79 
                 +D++++++++  e+ls+l+
  CCE27351.1 250 SDEQVQRFHQMEETLSQLV 268
                 6899999999999999886 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.24   2.7e+02      99     121 ..      51      73 ..      26      86 .. 0.66
   2 ?    7.8   5.0    0.0035       3.9      56     119 ..      90     152 ..      57     160 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.24
      DUF641  99 aelkakdseieeLkekLeeaeks 121
                 +e+++kd++i++L+++L+ +++ 
  CCE27351.1  51 TETTTKDKHITSLHQELSLLKQT 73 
                 56666677777777666554443 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0035
      DUF641  56 lkrlyrkkqkkkaseaeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeae 119
                 +k++ +++q+ ++  ++ + l ae+ +q   + +++   ++l++e  ++d+e+++L+ ++++++
  CCE27351.1  90 TKHRTLHQQFLHTD-TQLRVLTAEAATQTTQITALQQDRNQLRREAVERDAEMDRLRGQVRDMK 152
                 34444444444432.788889999999******************************9998876 PP

>> Peptidase_S64  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   6.5   0.00057      0.64      52     150 ..      37     134 ..      14     167 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00057
  Peptidase_S64  52 kaseeessaeedsstelaesssekssskqssSlfSksrktystkqssaksssskakksssvakaedvgkplrvletekltslntvleeeeeskeks 147
                    ++ +e++++ ++ +te++ + ++ +s  q+ Sl   +  t+ t+++s+++s  ++k+++ ++++ ++++ lrvl+ e  t++++++  ++++++ +
     CCE27351.1  37 DTANEQHNNYTAPNTETTTKDKHITSLHQELSLLK-QTLTHLTQTTSQTASFWQTKHRTLHQQFLHTDTQLRVLTAEAATQTTQITALQQDRNQLR 131
                    23333334444444444557788888889999987.899*************9999999999*************999999888877666655444 PP

  Peptidase_S64 148 ees 150
                     e+
     CCE27351.1 132 REA 134
                    332 PP

>> DASH_Spc34  DASH complex subunit Spc34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   5.5    0.0002      0.23     122     224 ..      23     136 ..      17     164 .. 0.81
   2 ?   -2.2   0.0       2.6   2.9e+03      97      97 ..     277     277 ..     248     360 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
  DASH_Spc34 122 lllalqngsvttgedsgssseka..nrrktafvedfdvelllkvleelltkyplleake.........kieelreeYeelseeieeleaeiaeQkkqLe 209
                  l+ +++ + t+ +d++++++++  ++ ++  ++d  + +l + l+ l ++  +l + +         k  +l++++ + +++++ l ae a+Q+ q++
  CCE27351.1  23 YLVSVRAANTTASPDTANEQHNNytAPNTETTTKDKHITSLHQELSLLKQTLTHLTQTTsqtasfwqtKHRTLHQQFLHTDTQLRVLTAEAATQTTQIT 121
                 67788888888899998877777877788899999999999888888888888877777788999999******************************* PP

  DASH_Spc34 210 aqnknesesssedds 224
                 a ++++++   e  +
  CCE27351.1 122 ALQQDRNQLRREAVE 136
                 *99999876655443 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.6
  DASH_Spc34  97 v 97 
                  
  CCE27351.1 277 W 277
                 2 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.4    0.0068       7.6      33      66 ..      50      83 ..      43      86 .. 0.83
   2 ?    1.1   0.9      0.47   5.3e+02      31      56 ..     108     133 ..      93     144 .. 0.69
   3 ?    2.3   0.1      0.19   2.2e+02      32      59 ..     130     157 ..     125     165 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0068
      Csm1_N 33 sqkletkdqeiesLkeqlaeleekvkeleerrkk 66
                ++++ tkd+ i sL ++l  l++ + +l + +++
  CCE27351.1 50 NTETTTKDKHITSLHQELSLLKQTLTHLTQTTSQ 83
                6788999***********9999999988887765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.47
      Csm1_N  31 vLsqkletkdqeiesLkeqlaeleek 56 
                 vL+ +  t++++i +L++  ++l+ +
  CCE27351.1 108 VLTAEAATQTTQITALQQDRNQLRRE 133
                 67777777777777777766666554 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.19
      Csm1_N  32 LsqkletkdqeiesLkeqlaeleekvke 59 
                 L+++   +d e+ +L+ q+  +++ v+ 
  CCE27351.1 130 LRREAVERDAEMDRLRGQVRDMKTFVSM 157
                 55666679************99987665 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.4      0.15   1.6e+02      39      82 ..      33      76 ..      26      91 .. 0.67
   2 ?   12.1   2.9   0.00015      0.17      18      68 ..     103     153 ..      89     166 .. 0.87
   3 ?   -0.4   0.2       1.2   1.3e+03      57      87 ..     255     285 ..     250     301 .. 0.63

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.15
  TMF_TATA_bd 39 eaerdeareeivklmkeneelkelkkeleelekeleelqeryet 82
                 +a+ d+a+e+  + ++ n e+++++k++++l +el+ l++ +  
   CCE27351.1 33 TASPDTANEQHNNYTAPNTETTTKDKHITSLHQELSLLKQTLTH 76
                 55666677777777777777777777777777777766665444 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00015
  TMF_TATA_bd  18 sseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkelee 68 
                   +++r l +E a+  ++++ l++ r+++r+e v+  +e+++l+ + +++++
   CCE27351.1 103 DTQLRVLTAEAATQTTQITALQQDRNQLRREAVERDAEMDRLRGQVRDMKT 153
                  6799********************************999999988887776 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.2
  TMF_TATA_bd  57 eelkelkkeleelekeleelqeryetlLell 87 
                  ++ ++++++l++l ++ e++++   ++L ll
   CCE27351.1 255 QRFHQMEETLSQLVRSEESINHWRASTLALL 285
                  5555666666666666666666666666666 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  10.7   0.00096       1.1       8      96 ..      49     136 ..      42     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00096
        FlxA   8 ssssssgsasqiasLqkQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekeekskskqegvn 96 
                   + +++ ++ i sL ++++ l++ L  l++++++t+   +++  ++ +Q      Q++ l +++a ++ +  + ++++++  + e+v+
  CCE27351.1  49 PNTETTTKDKHITSLHQELSLLKQTLTHLTQTTSQTASFWQTKHRTLHQQFLHTDTQLRVLTAEAATQTTQITALQQDRNQL-RREAVE 136
                 556778899*********************************************************9999988877777654.345655 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  20.0   0.00069      0.77      48     157 ..      34     152 ..      12     155 .. 0.70
   2 ?   -0.5   1.5       1.1   1.2e+03     120     163 ..     259     300 ..     250     313 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00069
       ATG16  48 akssksskksakekeasasq...snskqsakiqsleqklaqlreelaelyksrgela...........qrllelneelqkleeklkedeerlaeleaer 132
                 a++++++++ ++ +     +   ++++++++i+sl+q+l+ l++ l+ l ++ +++a           q+ l + ++l++l +++ ++++++ +l+++r
  CCE27351.1  34 ASPDTANEQHNNYT-----ApntETTTKDKHITSLHQELSLLKQTLTHLTQTTSQTAsfwqtkhrtlhQQFLHTDTQLRVLTAEAATQTTQITALQQDR 127
                 11122222222222.....12224467778888888888888888888877666543222222222229****************************** PP

       ATG16 133 aaletklkdreeelrekeklvqdlq 157
                 ++l+++  +r++e+  ++  v d++
  CCE27351.1 128 NQLRREAVERDAEMDRLRGQVRDMK 152
                 **************99998887765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
       ATG16 120 edeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaL 163
                 ++ee+l +l ++ ++++  +++  + lr  + ++q+lqDE + +
  CCE27351.1 259 QMEETLSQLVRSEESINHWRASTLALLR--RDAIQNLQDETDVH 300
                 5555555555555555554444444443..56899999998776 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   1.2     0.015        17      75     161 ..      46      91 ..      22     101 .. 0.48
   2 ?    6.9   2.7    0.0068       7.6      17      65 ..     104     152 ..     100     166 .. 0.89
   3 ?   -0.3   0.0       1.1   1.2e+03      38      80 ..     258     302 ..     247     334 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.015
        Fez1  75 lqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelkreverlraeLkeerqkkeeqassFeqE 161
                     ++e++++                                          +++++l++e+  l++ L++  q++ + as +++ 
  CCE27351.1  46 YTAPNTETTTK-----------------------------------------DKHITSLHQELSLLKQTLTHLTQTTSQTASFWQTK 91 
                 11112222222.........................................34555666666666666666666555555555443 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0068
        Fez1  17 qQLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleekt 65 
                 +QL+   ae ++++  i al+ +  +lr +  e+++e+++l+ ++++ +
  CCE27351.1 104 TQLRVLTAEAATQTTQITALQQDRNQLRREAVERDAEMDRLRGQVRDMK 152
                 79***************************************99988755 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.1
        Fez1  38 aqlrelrakleekeeeikeleeslee..ktlelevcenelqrkks 80 
                  q+ e+ ++l ++ee+i++ ++s+    + + ++++++e + + +
  CCE27351.1 258 HQMEETLSQLVRSEESINHWRASTLAllRRDAIQNLQDETDVHIE 302
                 344455555555555555444443221144444444444444433 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.27   3.1e+02     151     183 ..      51      83 ..      22      87 .. 0.61
   2 ?    9.9   2.4   0.00053      0.59      91     171 ..      71     152 ..      66     161 .. 0.84
   3 ?   -2.7   0.1       3.9   4.4e+03      69      83 ..     256     270 ..     250     311 .. 0.52

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.27
      DUF724 151 ekkeaadkeiarlkseaekleeeledveqeFea 183
                 ++  ++dk+i +l++e + l+++l +  q  ++
  CCE27351.1  51 TETTTKDKHITSLHQELSLLKQTLTHLTQTTSQ 83 
                 455556666666666666666666655555444 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00053
      DUF724  91 qsrlnkLlslkdeqtkl.leerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekle 171
                 ++ l+ L +  ++ ++  +++ + l++++ + +++ r l +e +    +i  l++ + +l+++  + d+e+ rl+ ++++++
  CCE27351.1  71 KQTLTHLTQTTSQTASFwQTKHRTLHQQFLHTDTQLRVLTAEAATQTTQITALQQDRNQLRREAVERDAEMDRLRGQVRDMK 152
                 5666667666666655426677889************************************************999988876 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.9
      DUF724  69 eleslkeslaeLekh 83 
                  ++++ e+l++L + 
  CCE27351.1 256 RFHQMEETLSQLVRS 270
                 444444444444332 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.9     0.012        13     147     254 ..      42     153 ..      21     165 .. 0.50

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.012
       FAM76 147 skskkkkskskk..skkskekskekkaskkkskkh...kkrssrlevskleeeklaeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdq 240
                 +++++++ ++++  + k+ ++  +++ s  k++ +   ++ s++ +  ++++++l+++  +++t+ + l ++   +  ++t L+++ ++l+++  ++d 
  CCE27351.1  42 QHNNYTAPNTETttKDKHITSL-HQELSLLKQTLThltQTTSQTASFWQTKHRTLHQQFLHTDTQLRVLTAEAATQTTQITALQQDRNQLRREAVERDA 139
                 1112111111110011111111.1111111111111111111111222222223555555556666688888889999999999999999999999999 PP

       FAM76 241 ellekdkkitelka 254
                 e+     ++ ++k+
  CCE27351.1 140 EMDRLRGQVRDMKT 153
                 99888888877776 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.9    0.0036         4      49     130 ..      51     132 ..      37     149 .. 0.84
   2 ?    0.5   0.1      0.56   6.2e+02      36      72 ..     256     292 ..     244     316 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0036
                 CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  49 nstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqker 130
                  +t++ +++++++++ l   +++ ++ ++++++ ++  ++++ +l+++  ++ +++rvL+    ++  +i+ L+qd +q++r
  CCE27351.1  51 TETTTKDKHITSLHQELSLLKQTLTHLTQTTSQTASFWQTKHRTLHQQFLHTDTQLRVLTAEAATQTTQITALQQDRNQLRR 132
                 4566677778888888887777777779999999999999999999999999999999999999999999999999988876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.56
                 HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  36 dlekleneleeisnstkeaeelvkeikdslrekqksk 72 
                 + +++e++l+++ +s++++++   ++   lr++  ++
  CCE27351.1 256 RFHQMEETLSQLVRSEESINHWRASTLALLRRDAIQN 292
                 4456666666666666666665555555555544333 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.1    0.0038       4.3      26      72 ..      52      98 ..      37     103 .. 0.73
   2 ?    3.7   0.3     0.071        79      11      53 ..     111     153 ..     104     161 .. 0.83
   3 ?    0.1   0.1      0.94   1.1e+03      36      58 ..     252     274 ..     250     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0038
       Tup_N 26 qkdeyelkiqsqiqElqqirqtlyeLeeahrkikqqYEeeiarLkae 72
                ++   +++i+s  qEl  ++qtl  L ++ ++    ++   + L+++
  CCE27351.1 52 ETTTKDKHITSLHQELSLLKQTLTHLTQTTSQTASFWQTKHRTLHQQ 98
                34444666********************9999888887777777766 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.071
       Tup_N  11 qEfdalsqeasslkaqkdeyelkiqsqiqElqqirqtlyeLee 53 
                 +E  + +++++ l++ ++ + +   +  +E++++r ++ ++++
  CCE27351.1 111 AEAATQTTQITALQQDRNQLRREAVERDAEMDRLRGQVRDMKT 153
                 6667778888899999999999999999999999999999975 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.94
       Tup_N  36 sqiqElqqirqtlyeLeeahrki 58 
                 +q+q ++q+ +tl +L ++ ++i
  CCE27351.1 252 EQVQRFHQMEETLSQLVRSEESI 274
                 6999999*****99998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1282  (0.0715043); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 2960.63
//
Query:       CCE27352.1  [L=677]
Description: uncharacterized protein CPUR_00826 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-32  112.5   0.1    3.9e-20   72.4   0.0    2.4  2  ATP_bind_3  PP-loop family
     0.0057   16.9   0.0      0.048   13.9   0.0    2.4  2  PAS_4       PAS fold


Domain annotation for each model (and alignments):
>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   4.4e-24   3.9e-20      25     146 ..      20     170 ..       3     183 .. 0.88
   2 !   37.6   0.0     2e-13   1.8e-09     136     180 ..     244     289 ..     220     291 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 4.4e-24
                 TTTTEEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE--H..............HHCTTSTCCCHHHHHHHHHHHHCHHCCT.CEEE---BHHHH CS
  ATP_bind_3  25 klgiklvaihvdhglreeskeeaelvkelckklnikleiekvdv..............akkkgknleeaARelRYevlkealkkegievlllAhhadDq 109
                 +  +++ ai +dh+lr+ s  ea  v++ +++++ik +++ +++              +  +  n+e+ AR+lRY+ l +++++ +++ l +Ahh+dD 
  CCE27352.1  20 NPVHSIYAIIIDHQLRQGSSVEASRVAREVAQMKIKPVVQALNWkqlgkqsgvrgsvgDPANLPNVETVARTLRYRTLGKVCRNLHVSSLFVAHHRDDD 118
                 3345999*****************************************9999999998667799*********************************** PP

                 HHHHHHHHCCT--CCHHH-S-SEEEE...............TTCCEE-CCCT CS
  ATP_bind_3 110 aEtfllrlargsglaglagikeasei...............asirlvRPlLk 146
                 +Et+l+r ++g++ +g +gi++a+ i               ++    RP+L 
  CCE27352.1 119 YETVLMRYKNGHSYRGCQGIPKANAIpechhlhgvyqsgllDDQMRARPFLS 170
                 ***********************99987887777777777655566777776 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 2e-13
                 TTCCEE-CCCT--HHHHHHHHHHTT---B--CGGGCTTSH.HHHHH CS
  ATP_bind_3 136 asirlvRPlLkvskeeleeylkekkikwveDesNadekye.RnriR 180
                  ++ ++RPlL++ k+ l ++++ ++ikw+eD++N+d   + Rn+iR
  CCE27352.1 244 GGVMIYRPLLQFDKDRLIATCEANNIKWFEDPTNSDATLTpRNAIR 289
                 45889*********************************999****9 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.2   1.8e+03      29      66 ..     157     195 ..     149     205 .. 0.67
   2 !   13.9   0.0   5.4e-06     0.048      25      74 ..     512     561 ..     503     580 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.2
       PAS_4  29 gappeellGktlaellpee.daarleralrrvlegeepi 66 
                 g+ +++++ +++ +l p+  + + l+r ++  le eep+
  CCE27352.1 157 GLLDDQMRARPFLSLKPPNkAMRHLRRLMKSELEAEEPL 195
                 777889999999988887545555555555555555554 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5.4e-06
       PAS_4  25 aelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll 74 
                 a+lf +p++  + k+++e+lp+ ++arle++lr+ + g+ +++ +  + +
  CCE27352.1 512 ARLFLLPFQPQYAKRFREMLPPKQRARLEQILRHYAPGKVRYTLPALYSC 561
                 479999*******************************9999887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4744.91
//
Query:       CCE27353.1  [L=536]
Description: uncharacterized protein CPUR_00827 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3862.78
//
Query:       CCE27354.1  [L=294]
Description: uncharacterized protein CPUR_00828 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.14   10.1   0.0       0.18    9.7   0.0    1.1  1  Herpes_Helicase  Helicase


Domain annotation for each model (and alignments):
>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0     1e-05      0.18     721     778 ..     220     276 ..     218     290 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 1e-05
  Herpes_Helicase 721 cttvDYgissklamtiaksqGlslekvAicFgnhknlklssvYvalsRatdseflvmd 778
                      ct + + ++   a+ + ksqG  l+k  i+ +++     +  Y a+s + + + +++d
       CCE27354.1 220 CTRTQFPLTTAYAISVPKSQGCKLDKAVIDISAK-DFTPELAYDAISCVKSLKGIMFD 276
                      8999999***********************9987.99**********99998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2126.26
//
Query:       CCE27355.1  [L=513]
Description: uncharacterized protein CPUR_00829 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3887.00
//
Query:       CCE27356.1  [L=557]
Description: uncharacterized protein CPUR_00830 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3881.44
//
Query:       CCE27357.1  [L=419]
Description: uncharacterized protein CPUR_00831 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0089   16.2   1.2         96    3.2   0.0    4.7  5  DALR_1           DALR anticodon binding domain
  ------ inclusion threshold ------
      0.033   14.4   3.5    3.2e+02    1.6   0.0    5.8  6  2C_adapt         2-cysteine adaptor domain
        5.5    6.8  19.1         13    5.6   0.2    5.2  5  Antimicrobial21  Plant antimicrobial peptide


Domain annotation for each model (and alignments):
>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.016        96      69      95 ..      62      88 ..      59      93 .. 0.86
   2 ?    2.7   0.0     0.023   1.4e+02      68      95 ..     128     155 ..     126     160 .. 0.83
   3 ?    0.8   0.0     0.089   5.3e+02      69      95 ..     191     217 ..     189     222 .. 0.85
   4 ?    1.4   0.0     0.056   3.3e+02      68      95 ..     257     284 ..     255     289 .. 0.84
   5 ?    1.4   0.0     0.056   3.3e+02      68      95 ..     333     360 ..     331     365 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.016
                HHHHHHHHHHCTSTTSCTHHH.HHHHH CS
      DALR_1 69 aatfhkfYnkervlkeeeeelaaaRLa 95
                a++ ++ Yn++rv +++++   a++La
  CCE27357.1 62 AKKCNEEYNACRVAPDANQSFCASKLA 88
                8999*************9988777776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.023
                 HHHHHHHHHHHCTSTTSCTHHH.HHHHH CS
      DALR_1  68 LaatfhkfYnkervlkeeeeelaaaRLa 95 
                  a++ ++ Yn++rv +++++    ++La
  CCE27357.1 128 CAKKCNEEYNACRVAPDANQSFCSSKLA 155
                 58999***********999987666665 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.089
                 HHHHHHHHHHCTSTTSCTHHH.HHHHH CS
      DALR_1  69 aatfhkfYnkervlkeeeeelaaaRLa 95 
                 a++ ++ Yn+++v ++++    a++La
  CCE27357.1 191 AKKCNEEYNACQVAPDANHSFCASKLA 217
                 7899999********999987777776 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.056
                 HHHHHHHHHHHCTSTTSCTHHH.HHHHH CS
      DALR_1  68 LaatfhkfYnkervlkeeeeelaaaRLa 95 
                  a++ ++ Yn+++v ++++    a++La
  CCE27357.1 257 CAKKCNEEYNACQVAPDANHSFCASKLA 284
                 58999***********999987777776 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.056
                 HHHHHHHHHHHCTSTTSCTHHH.HHHHH CS
      DALR_1  68 LaatfhkfYnkervlkeeeeelaaaRLa 95 
                  a++ ++ Yn+++v ++++    a++La
  CCE27357.1 333 CAKKCNEEYNACQVAPDANHSFCASKLA 360
                 58999***********999987777776 PP

>> 2C_adapt  2-cysteine adaptor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.72   4.3e+03      15      22 ..      46      53 ..      45      55 .. 0.81
   2 ?    1.6   0.0     0.053   3.2e+02      11      16 ..      93      98 ..      86      99 .. 0.91
   3 ?    1.6   0.0     0.056   3.3e+02      11      16 ..     160     165 ..     155     166 .. 0.92
   4 ?    1.6   0.0     0.054   3.2e+02      11      16 ..     222     227 ..     216     228 .. 0.91
   5 ?    1.6   0.0     0.054   3.2e+02      11      16 ..     289     294 ..     283     295 .. 0.91
   6 ?    1.6   0.0     0.054   3.2e+02      11      16 ..     365     370 ..     359     371 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.72
    2C_adapt 15 TgRkikpd 22
                T+++ik +
  CCE27357.1 46 TDCPIKTG 53
                9****965 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.053
    2C_adapt 11 vNPlTg 16
                +NP+Tg
  CCE27357.1 93 YNPFTG 98
                9****9 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.056
    2C_adapt  11 vNPlTg 16 
                 +NP+Tg
  CCE27357.1 160 YNPFTG 165
                 9****9 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.054
    2C_adapt  11 vNPlTg 16 
                 +NP+Tg
  CCE27357.1 222 YNPFTG 227
                 9****9 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.054
    2C_adapt  11 vNPlTg 16 
                 +NP+Tg
  CCE27357.1 289 YNPFTG 294
                 9****9 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.054
    2C_adapt  11 vNPlTg 16 
                 +NP+Tg
  CCE27357.1 365 YNPFTG 370
                 9****9 PP

>> Antimicrobial21  Plant antimicrobial peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2    0.0022        13       2      11 ..      57      67 ..      56      70 .. 0.83
   2 ?    3.7   0.2    0.0085        51       2      11 ..     124     134 ..     123     137 .. 0.80
   3 ?    0.4   0.7     0.092   5.5e+02       3      11 ..     187     196 ..     185     199 .. 0.76
   4 ?    3.7   0.2    0.0085        51       2      11 ..     253     263 ..     252     266 .. 0.80
   5 ?    3.7   0.2    0.0085        51       2      11 ..     329     339 ..     328     342 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0022
  Antimicrobial21  2 grdrCrkkC.q 11
                     g+d+C kkC +
       CCE27357.1 57 GGDECAKKCnE 67
                     89*******55 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0085
  Antimicrobial21   2 grdrCrkkC.q 11 
                      g+ +C kkC +
       CCE27357.1 124 GDAECAKKCnE 134
                      899******55 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.092
  Antimicrobial21   3 rdrCrkkC.q 11 
                       + C kkC +
       CCE27357.1 187 ECACAKKCnE 196
                      578*****55 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.0085
  Antimicrobial21   2 grdrCrkkC.q 11 
                      g+ +C kkC +
       CCE27357.1 253 GDAECAKKCnE 263
                      899******55 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.0085
  Antimicrobial21   2 grdrCrkkC.q 11 
                      g+ +C kkC +
       CCE27357.1 329 GDAECAKKCnE 339
                      899******55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      132  (0.00736237); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3194.53
//
Query:       CCE27358.1  [L=541]
Description: uncharacterized protein CPUR_00832 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3869.93
//
Query:       CCE27359.1  [L=540]
Description: uncharacterized protein CPUR_00833 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3913.80
//
Query:       CCE27360.1  [L=539]
Description: uncharacterized protein CPUR_00834 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.16   10.5   0.0       0.22   10.1   0.0    1.1  1  Peptidase_M44  Metallopeptidase from vaccinia pox


Domain annotation for each model (and alignments):
>> Peptidase_M44  Metallopeptidase from vaccinia pox
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   1.2e-05      0.22      41      94 ..     286     340 ..     257     368 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 1.2e-05
  Peptidase_M44  41 hllehilisfdsskfvanastarsymsfwcksikkrseldavrtlis.wffdkdk 94 
                      +eh l++f ss + + a  +rsy+ f ck + k  +++a+ +++  w++ +++
     CCE27360.1 286 PCVEHHLLQFQSSLWESVAILTRSYLQFSCKLRSKVIFKEALIHIVGiWYLGQER 340
                    468***************************9888888888887777537765553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3813.36
//
Query:       CCE27361.1  [L=458]
Description: uncharacterized protein CPUR_00835 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   14.5   0.0       0.15   11.3   0.0    2.6  1  DUF4097   Putative adhesin


Domain annotation for each model (and alignments):
>> DUF4097  Putative adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.6e-06      0.15      83     174 ..     217     313 ..      81     317 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.6e-06
     DUF4097  83 dlqvkassGdlsvek.......atklkaetlelksssGdltlsnvsaktltvksesGdvtiegseakk..lklqltsGdieleslsletldltsssGdl 172
                  l+++++sG++sve        ++ ++  +l++++ sG+++++  s+ ++ + s    +  +   a +  ++l++ sG ie++ + ++ + ++s+ Gdl
  CCE27361.1 217 LLKIQSASGNISVELdlestywNSAVH-ASLSVETISGNIDIKTRSTFYAHIESR---IAKNKPPARDyvVELTSVSGIIEAHVVMASRGIFRSEAGDL 311
                 678888999999776667677444444.457788888888888888766666654...44455555555677777777777777777777777777777 PP

     DUF4097 173 tl 174
                 +l
  CCE27361.1 312 RL 313
                 76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3590.24
//
Query:       CCE27362.1  [L=451]
Description: uncharacterized protein CPUR_00836 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.07   12.9   0.1       0.23   11.2   0.0    1.8  2  PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransf


Domain annotation for each model (and alignments):
>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.22   3.9e+03      40      51 ..     134     145 ..     129     177 .. 0.71
   2 ?   11.2   0.0   1.3e-05      0.23      33      81 ..     193     240 ..     189     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.22
                 EEES--EEEEE- CS
  PTS_EIIA_1  40 vvapvdGkvekv 51 
                 ++apv G + ++
  CCE27362.1 134 LYAPVRGGIDTL 145
                 566666666554 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 1.3e-05
                 EEE-SSEEEES--EEEEE--SSSSEEEEESSSS-EEEEE-SSSTTTTTT CS
  PTS_EIIA_1  33 iepsegkvvapvdGkvekvfptkHaigiktddgvevlihiGidtvklkg 81 
                 i  s++ +v  ++G++e  fp +H + i++++g +vl+ +G++   l+ 
  CCE27362.1 193 ILQSRQIIVNTISGNIEGWFPLHHLLKIQSASG-NVLVEVGLESTFLDS 240
                 55566789999*****************99877.79******9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3242.55
//
Query:       CCE27363.1  [L=436]
Description: uncharacterized protein CPUR_00837 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-06   25.6   4.1    0.00037   19.9   3.0    3.7  2  DUF4097   Putative adhesin
    0.00089   19.1   2.6        1.1    9.1   0.1    3.3  3  DUF3540   Protein of unknown function (DUF3540)


Domain annotation for each model (and alignments):
>> DUF4097  Putative adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   3.0   4.1e-08   0.00037      70     195 ..     126     313 ..      34     315 .. 0.72
   2 !    7.5   0.3   0.00026       2.4      84     118 ..     282     313 ..     233     384 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.1e-08
     DUF4097  70 kitiylPkktkledlqvkassGdlsvekatklk.aetlelksssGdltlsnvs...............................aktltvksesGdvti 136
                  i++y+P + +++dl+ +++s ++s+ +  +l+ ae++ + ++sG+++    +                               +  l+vks sG+++i
  CCE27363.1 126 HIIVYVPIGGNIKDLALTVDSLNVSIDEDLNLNaAESIMITATSGNVSAPSLKsnargqiphslksrhiivqtvsgnvegwlplHHLLNVKSVSGNLSI 224
                 467777777777766666666666666522332134455555555555555555555555555555555555555555555555*************** PP

     DUF4097 137 egseakklklqltsGdieleslslet...............................ldltsssGdltlsntklegsltitassGdvdls 195
                 +    +++  + t  ++ ++s+s++                                + +t+ sGd++++ +  + s  i+++sG+ +l 
  CCE27363.1 225 DVGLESSYPNSDTCAKLMVQSVSGKVvirepyvfysqfnkhwkmsecknqppsrdyiVAVTTASGDIDAQVAVTS-SAIIRSASGNLRLD 313
                 85443333333366699999999999999999999**********************************977666.89999999998775 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00026
     DUF4097  84 lqvkassGdlsvekatklkaetlelksssGdltls 118
                 ++v+++sGd++ +      ++++++ s+sG+l+l 
  CCE27363.1 282 VAVTTASGDIDAQ---VAVTSSAIIRSASGNLRLD 313
                 4556666666655...5555666666666666554 PP

>> DUF3540  Protein of unknown function (DUF3540)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.029   2.6e+02      63     103 ..      56      96 ..      43     111 .. 0.54
   2 !    6.8   0.1    0.0006       5.4      69     136 ..     139     202 ..     135     209 .. 0.74
   3 !    9.1   0.1   0.00012       1.1      45      92 ..     276     322 ..     268     363 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.029
     DUF3540  63 klsveGdleleaeaGrlsleaakavalaaaeeldlaaerlk 103
                 +++v+G le++++ + +s +++ +++ +++ +   aa++++
  CCE27363.1  56 TVQVSGRLEIRSSGDYFSNTGHIEIECSSEDATLTAATSVQ 96 
                 56666666666666655544443333333333333333333 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0006
     DUF3540  69 dleleaeaGrlsleaakavalaaaeeldlaaerlkvsaekaevaveelsllgeeleakvekvrlvaks 136
                 dl+l +  ++l+++  + ++l+aae++ ++a++ +vsa + +   ++   + ++l++++  v++v+ +
  CCE27363.1 139 DLALTV--DSLNVSIDEDLNLNAAESIMITATSGNVSAPSLK--SNARGQIPHSLKSRHIIVQTVSGN 202
                 455555..6799999999******************997654..445555666666666666666655 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00012
     DUF3540  45 agevYiLAvLeraeaaeaklsveGdleleaeaGrlsleaakavalaaa 92 
                 + + Yi+Av +   +  a+++v+    +++++G+l+l+ a  v+l+ +
  CCE27363.1 276 PSRDYIVAVTTASGDIDAQVAVTSSAIIRSASGNLRLDVA-VVRLTPG 322
                 4678*********************************999.8888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2968.89
//
Query:       CCE27364.1  [L=431]
Description: uncharacterized protein CPUR_00838 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-07   29.6   1.9    4.8e-05   22.8   0.6    3.9  2  DUF4097   Putative adhesin
  ------ inclusion threshold ------
      0.011   15.6   0.0       0.62   10.0   0.0    3.0  3  DUF2154   Cell wall-active antibiotics response 4TMS YvqF


Domain annotation for each model (and alignments):
>> DUF4097  Putative adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.55     5e+03      85      92 ..      52      59 ..      42      74 .. 0.46
   2 !   22.8   0.6   5.3e-09   4.8e-05      71     251 ..      99     354 ..      95     415 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.55
     DUF4097 85 qvkassGd 92
                ++k  sGd
  CCE27364.1 52 EIKIISGD 59
                12222222 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 5.3e-09
     DUF4097  71 itiylPkktkledlqvkassGdlsvek...............................atklkaetlelksssGdltlsnvsaktltvksesGdvtie. 137
                 +t+y P + +l+ l+ k++s d+sv +                               +++++++++ +++ sG ++     ++ l++ks+sG v +e 
  CCE27364.1  99 VTVYMPCDAQLDILELKVDSLDVSVMEglklkvadkmsittfsgsvrvpsfsrtgrtsENRVESREMLIQTYSGAIEGGFSLHDLLKIKSGSGSVFLEl 197
                 89*******999777777776666443233333222222223333333335555555566666666666666655555555577777777777665442 PP

     DUF4097 138 ......gseakklklqltsGdieleslslet.......................ldltsssGdltlsntklegsltitassGdvdlsl.......peek 200
                       + ++ kl ++++ G+i+++     t                       ++l+++sG++ ++    +   t+++  Gdv l l       ++++
  CCE27364.1 198 glvsteSATSAKLSVETEFGNIRIT-----TpfvfyyrqskkgyknkppsrdyiVELETTSGKIEADVVVAS-RATVRSRAGDVLLRLvpvpfsaRGNG 290
                 1110003333334444444444444.....366666999****************************66555.99********9987633322224568 PP

     DUF4097 201 kaavdassesGdvslpk............kreeeekesnsisasekn.akkkvsvstssGDitv 251
                 k+ v  ++++G+ +++             k  ++++ + ++++s++  a  +   ++ sGDi+v
  CCE27364.1 291 KTTVVTDVDYGKTRIFLlessysgapcadKASSTTELETTNTSSNSGlAGLHSAHRSISGDIKV 354
                 8899999999999999977777777766544444433333333333303333333344666665 PP

>> DUF2154  Cell wall-active antibiotics response 4TMS YvqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.84   7.6e+03     104     114 .]     136     146 ..     131     163 .. 0.60
   2 ?    1.8   0.0     0.023   2.1e+02      17      56 ..     184     224 ..     175     230 .. 0.85
   3 ?   10.0   0.0   6.9e-05      0.62      45      79 ..     346     380 ..     322     394 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.84
     DUF2154 104 ivslliGdveV 114
                 +++++ G+v+V
  CCE27364.1 136 SITTFSGSVRV 146
                 33444444433 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.023
     DUF2154  17 inissiiGdttiDLtkavlpegetv.ivirkliGdvkilVP 56 
                 ++i+s++G++ + L  +  +   +  + ++  +G+++i+ P
  CCE27364.1 184 LKIKSGSGSVFLELGLVSTESATSAkLSVETEFGNIRITTP 224
                 789999999999999999988776669**********9987 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 6.9e-05
     DUF2154  45 rkliGdvkilVPedvevsveasvifGdvkvldeke 79 
                 r++ Gd+k+ VP+d++ ++ a + +Gd++  +++ 
  CCE27364.1 346 RSISGDIKVDVPDDWSGELIADTHTGDITSYGKHI 380
                 7899************************9777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3094.23
//
Query:       CCE27365.1  [L=479]
Description: uncharacterized protein CPUR_00839 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-07   28.8   0.0    0.00033   20.1   0.0    4.1  1  DUF4097   Putative adhesin


Domain annotation for each model (and alignments):
>> DUF4097  Putative adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.8e-08   0.00033      71     196 ..     136     320 ..     132     457 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.8e-08
     DUF4097  71 itiylPkktkledlqvkassGdlsvek.atklkaetlelksssGdltlsnvs..............................aktltvksesGdvtie. 137
                 it+y+P++ +++ l++k+++ d+s+++  t +++e + + +++G ++    s                              ++ l +ks sG v ie 
  CCE27365.1 136 ITVYVPRGGQIDALDIKVANLDVSFSGpLTLVATERTFITTDYGRVYAPTRSsrrkldpyvlqsrqiiirtssgnvegwfplHQVLRIKSLSGLVAIEl 234
                 9***********************999955555555555555555555544445555555555555555555555555555599999999999998854 PP

     DUF4097 138 ......gseakk..lklqltsGdieleslslet....................ldltsssGdltlsntklegsltitassGdvdlsl 196
                       + +a++  + +++ sG i++++ s+                      +++ +++G++ ++    +   ti+++ Gd  l l
  CCE27365.1 235 glesadSHSATQakVFVETGSGSIDIKTPSIFYaksnkhnkapkrqppardyvVEIATTYGKIEADIVAAS-RATIRSKAGDLLLRL 320
                 33333122333335667788888888887777688999999**********99999999999999955555.999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3415.28
//
Query:       CCE27366.1  [L=448]
Description: uncharacterized protein CPUR_00840 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00012   21.6   0.0     0.0019   17.6   0.0    3.0  2  DUF4097   Putative adhesin


Domain annotation for each model (and alignments):
>> DUF4097  Putative adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.029   5.1e+02      40      61 ..      38      59 ..      27     104 .. 0.71
   2 !   17.6   0.0   1.1e-07    0.0019      75     139 ..     233     311 ..     226     443 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.029
     DUF4097 40 etggtLsitqkekngvstgfik 61
                 +g+tLsi+q+ +++ ++g+ +
  CCE27366.1 38 NSGNTLSIEQSGQSDGHRGGRE 59
                6788888888888887777644 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.1e-07
     DUF4097  75 lPkktkledlqvkassGdlsvek..............atklkaetlelksssGdltlsnvsaktltvksesGdvtiegs 139
                 +P++t++++l+v++ sG l ++                       ++l + sG+++ + v a+++t+ s+sGd++++ +
  CCE27366.1 233 VPDSTTHAKLSVRTTSGKLVISTpeifhmterriserRPPARDYVVKLVTLSGNIEAKVVMASRATFRSTSGDIRVDAI 311
                 9*****************9988878888888888865444444446777788***********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3259.46
//
Query:       CCE27367.1  [L=637]
Description: related to peroxisomal Ca-dependent solute carrier protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-67  222.4   4.0    2.1e-24   85.2   0.2    3.2  3  Mito_carr        Mitochondrial carrier protein
    4.1e-21   72.9   1.3    1.1e-06   27.8   0.1    4.4  4  EF-hand_1        EF hand
    4.1e-20   72.0   2.3    2.5e-09   37.5   0.4    2.5  2  EF-hand_7        EF-hand domain pair
    9.8e-18   62.5   3.9     0.0001   21.9   0.0    4.6  4  EF-hand_6        EF-hand domain
    5.4e-17   60.4   2.3    5.3e-05   22.5   0.1    3.8  3  EF-hand_5        EF hand
    2.4e-11   43.3   0.1    0.00037   20.3   0.0    2.8  2  EF-hand_8        EF-hand domain pair
    1.6e-06   28.4   0.0     0.0035   17.7   0.0    2.2  2  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
     0.0033   16.6   1.1        0.7    9.0   0.0    2.9  3  Serine_protease  Gammaproteobacterial serine protease
     0.0054   17.0   0.0        2.4    8.5   0.0    3.0  2  EF-hand_9        EF-hand domain
  ------ inclusion threshold ------
      0.022   15.1   0.5       0.81   10.1   0.0    2.5  2  EF-hand_14       EF-hand domain
       0.15   12.0   0.0       0.21   11.5   0.0    1.1  1  Alpha-2-MRAP_C   Alpha-2-macroglobulin RAP, C-terminal domain


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   7.6e-22   1.2e-18       8      94 ..     324     426 ..     320     429 .. 0.94
   2 !   70.1   0.5   6.8e-23   1.1e-19       3      95 ..     437     529 ..     435     531 .. 0.95
   3 !   85.2   0.2   1.3e-27   2.1e-24       7      93 ..     548     634 ..     543     637 .] 0.95

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 7.6e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS................HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaa................ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90 
                 +++aG++ag v+ ++t+Pld++K+ l ++ +++ +s  +a                i+d+++ ++++ G+r+++ G++ n+++++p++a+kf++ye  k
  CCE27367.1 324 YFVAGAIAGGVSRTATAPLDRLKVYLLVNTRNNCESAVGAgtkggpvpgagnaprpIRDAVRDLFRNGGIRSFFAGNGLNVIKIMPETAIKFGSYEAAK 422
                 699*************************9998888777778889999999999********************************************** PP

                 HHHC CS
   Mito_carr  91 rlll 94 
                 r l 
  CCE27367.1 423 RALA 426
                 *986 PP

  == domain 2  score: 70.1 bits;  conditional E-value: 6.8e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 ++ ++++ aGg+ag++a+++++Pld++K rlq ++ ++  +++a ++++  k++ + G+++ yrG+++ l++++p+sa+ ++++e lk++++ 
  CCE27367.1 437 INSYSKFTAGGVAGMIAQFCVYPLDTLKFRLQCESVQGGLQGRALVRQTAVKMFADGGVKACYRGVTMGLVGMFPYSAIDMGMFELLKKTYQS 529
                 677899*******************************99999999********************************************9976 PP

  == domain 3  score: 85.2 bits;  conditional E-value: 1.3e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 ++ ++G+++ga++++v++Pl vv+trlqtq+++ + +++++i+dv +k+++ eG rgly+Gl+pnll+vapa ++++ +ye  k +l
  CCE27367.1 548 ATGMIGATSGAIGATVVYPLNVVRTRLQTQGTMMHPATYTGIWDVTQKTIQREGYRGLYKGLTPNLLKVAPALSITWIVYENSKSVL 634
                 66789*****************************************************************************99987 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.05        82       2      20 ..      21      39 ..      20      48 .. 0.82
   2 !   27.8   0.1   6.7e-10   1.1e-06       2      27 ..      59      84 ..      58      86 .. 0.93
   3 !   13.8   0.0   1.9e-05     0.031       5      28 ..      93     116 ..      89     117 .. 0.90
   4 !   23.7   0.4   1.3e-08   2.1e-05       2      26 ..     126     150 ..     125     151 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.05
                HHHHHHHHTTTSSSEEEHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfe 20
                ++++++++D  g G +d++
  CCE27367.1 21 VERLWSKLDPSGKGELDLK 39
                6889************986 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 6.7e-10
                HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellk 27
                lk+i+re+D+++dGkI +eEf+ +++
  CCE27367.1 59 LKQIMREVDTNRDGKIQYEEFRVFVQ 84
                79********************9986 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 1.9e-05
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                 +F  +D+D +Gk+d  E+++++++
  CCE27367.1  93 LFHSIDRDANGKLDPAELQTAFRT 116
                 7999****************9985 PP

  == domain 4  score: 23.7 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 l e+F+++D ++dG+++f+E++++l
  CCE27367.1 126 LSEFFQDLDGNNDGYVSFDEWRNFL 150
                 6799******************987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   1.7e-11   2.7e-08       4      71 .]      21      84 ..      18      84 .. 0.89
   2 !   37.5   0.4   1.5e-12   2.5e-09       2      68 ..      88     148 ..      87     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.7e-11
   EF-hand_7  4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71
                +++ + +lD  g g ld   l++ +r+i+   ++ ++  ++ l+++++e+Dt++dG+i ++EF+ +++
  CCE27367.1 21 VERLWSKLDPSGKGELDLKGLRKGFRRID---HPLKN-ASDLLKQIMREVDTNRDGKIQYEEFRVFVQ 84
                5678999*******************998...77777.556899*******************99875 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 1.5e-12
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                  +l+  F ++D+d +g+ld++el+ ++r        g ++s   l ++f+++D ++dG++sfdE ++
  CCE27367.1  88 RQLFHLFHSIDRDANGKLDPAELQTAFR------TAGLSISNRRLSEFFQDLDGNNDGYVSFDEWRN 148
                 68999***********************......677777777799******************666 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0058       9.5       3      27 ..      22      46 ..      20      54 .. 0.89
   2 !   13.2   0.0     4e-05     0.065       2      25 ..      59      82 ..      58      86 .. 0.85
   3 !   21.9   0.0   6.4e-08    0.0001       2      28 ..      90     116 ..      89     121 .. 0.91
   4 !   18.2   0.7     1e-06    0.0016       2      26 ..     126     150 ..     125     153 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0058
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalr 27
                ++++ ++D +g G++d + lrk +r
  CCE27367.1 22 ERLWSKLDPSGKGELDLKGLRKGFR 46
                67899****************9998 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4e-05
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrka 25
                l+++ ++ D+++dGki +eE+r +
  CCE27367.1 59 LKQIMREVDTNRDGKIQYEEFRVF 82
                66778899*************965 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 6.4e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 l ++F+ +D+d +Gk+d++El+ a+r+
  CCE27367.1  90 LFHLFHSIDRDANGKLDPAELQTAFRT 116
                 789**********************95 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 1e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 l e+F+ +D ++dG+++++E+r++l
  CCE27367.1 126 LSEFFQDLDGNNDGYVSFDEWRNFL 150
                 669*******************998 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   3.2e-08   5.3e-05       1      25 []      59      83 ..      59      83 .. 0.90
   2 !   12.8   0.0   3.8e-05     0.062       4      23 ..      93     112 ..      92     114 .. 0.91
   3 !   22.3   0.6   3.8e-08   6.3e-05       3      25 .]     128     150 ..     126     151 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.2e-08
                HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELktlv 25
                lk+  +++D+N+DGkI  eE++ +v
  CCE27367.1 59 LKQIMREVDTNRDGKIQYEEFRVFV 83
                567889***************9886 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.8e-05
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F  iD +  Gk+++ EL+t
  CCE27367.1  93 LFHSIDRDANGKLDPAELQT 112
                 6999**************98 PP

  == domain 3  score: 22.3 bits;  conditional E-value: 3.8e-08
                 HHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktlv 25 
                 ++Fq +D N+DG++s++E+++++
  CCE27367.1 128 EFFQDLDGNNDGYVSFDEWRNFL 150
                 57******************975 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.5e-07   0.00041      31      54 ..      62      85 ..      54      86 .. 0.93
   2 !   20.3   0.0   2.2e-07   0.00037       2      50 ..     102     148 ..      89     151 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.5e-07
   EF-hand_8 31 lfrefDtdgdGkisfeEFcvller 54
                ++re+Dt++dGki +eEF v++++
  CCE27367.1 62 IMREVDTNRDGKIQYEEFRVFVQE 85
                79******************9986 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 2.2e-07
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcv 50 
                 +gk++++el+++ r+ gl   +s+  + + f  +D ++dG++sf+E  +
  CCE27367.1 102 NGKLDPAELQTAFRTAGLS--ISNRRLSEFFQDLDGNNDGYVSFDEWRN 148
                 79*********99666999..************************9655 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0014       2.2      43     110 ..       8      79 ..       2      82 .. 0.79
   2 !   17.7   0.0   2.1e-06    0.0035      50     111 ..      84     147 ..      80     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0014
  SPARC_Ca_bdg  43 keeeknlkeckepvawkFsklDtnsdkvlsksEL....aplraplvklehCikpflescDadkdkkislkEw 110
                   +++ ++++e    v+  +sklD    + l+ + L    + + +pl +     k+ +++ D+++d+ki+ +E+
    CCE27367.1   8 RQFGESQNERDVRVERLWSKLDPSGKGELDLKGLrkgfRRIDHPLKNASDLLKQIMREVDTNRDGKIQYEEF 79 
                   55666666777777778899998888888876662222579******************************9 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 2.1e-06
  SPARC_Ca_bdg  50 keckepvawkFsklDtnsdkvlsksELapl..raplvklehCikpflescDadkdkkislkEwc 111
                   +e + ++   F+++D + ++ l+ +EL+    +a l   ++  ++f++  D ++d+ +s  Ew 
    CCE27367.1  84 QEAERQLFHLFHSIDRDANGKLDPAELQTAfrTAGLSISNRRLSEFFQDLDGNNDGYVSFDEWR 147
                   5667788899*****************9753346799999***********************5 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.47   7.7e+02     177     206 ..     325     354 ..     323     359 .. 0.89
   2 !    9.0   0.0   0.00043       0.7     173     222 ..     439     491 ..     435     509 .. 0.75
   3 !    4.7   0.1    0.0089        15     178     207 ..     551     580 ..     541     618 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.47
  Serine_protease 177 llaGalsGviAtvlttifnsykDkkllask 206
                      ++aGa++G +  + t ++  +k + l++++
       CCE27367.1 325 FVAGAIAGGVSRTATAPLDRLKVYLLVNTR 354
                      789***************999999999886 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00043
  Serine_protease 173 lynkllaGalsGviAtvlttifnsykDkkllaskv...engrlltaspftllk 222
                       y k++aG ++G+iA ++ +++ ++k +   +s     +   l+ +++++++ 
       CCE27367.1 439 SYSKFTAGGVAGMIAQFCVYPLDTLKFRLQCESVQgglQGRALVRQTAVKMFA 491
                      689*******************9999775544432220334466667777776 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0089
  Serine_protease 178 laGalsGviAtvlttifnsykDkkllaskv 207
                      + Ga+sG+i +++ +++n  + +  ++ ++
       CCE27367.1 551 MIGATSGAIGATVVYPLNVVRTRLQTQGTM 580
                      557777777777777777655444444333 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0015       2.4      31      57 ..      15      40 ..       4      47 .. 0.83
   2 ?    4.8   0.0     0.021        35       3      59 ..      93     147 ..      91     151 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0015
   EF-hand_9 31 dpeeseLeelakelDPdgedasvdldt 57
                +  ++++e l ++lDP g+ +++dl +
  CCE27367.1 15 NERDVRVERLWSKLDPSGK-GELDLKG 40
                56788**************.9999865 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.021
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtfl 59 
                 +F+  D++  G+   ++l +  r  +  + ++ +L e+ + lD ++  + v +d + 
  CCE27367.1  93 LFHSIDRDANGKLDPAELQTAFRTAGL-SISNRRLSEFFQDLDGNND-GYVSFDEWR 147
                 69999*******************999.99999**********8887.999999876 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.095   1.5e+02      26      75 ..      36      86 ..      11      91 .. 0.77
   2 ?   10.1   0.0    0.0005      0.81       5      46 ..      93     134 ..      87     148 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.095
  EF-hand_14 26 LaetGirkdDpRLkellkklkkvekeks.eaeesetleldretFkkcveen 75
                L  +G+rk   R+++ lk+  ++ k+   e+ + ++ +++ e+F+  v+e 
  CCE27367.1 36 LDLKGLRKGFRRIDHPLKNASDLLKQIMrEVDTNRDGKIQYEEFRVFVQEA 86
                566778888888888888888877776656677778999999999999875 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0005
  EF-hand_14   5 lfdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklk 46 
                 lf +++++ ++kl  a+l +a +++G+  +  RL+e+++ l 
  CCE27367.1  93 LFHSIDRDANGKLDPAELQTAFRTAGLSISNRRLSEFFQDLD 134
                 7888889999****************************9986 PP

>> Alpha-2-MRAP_C  Alpha-2-macroglobulin RAP, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.21       3      69 ..      17      84 ..      16     124 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
  Alpha-2-MRAP_C  3 kDkkLnkLWekaetsgFteeeLekLkeEfkhhqeKideYnsLleelekeee.kheNaiseeeldkvne 69
                    +D ++++LW+k   sg  e +L+ L++ f++  + +++  +Ll+++ +e + + + +i+ ee + + +
      CCE27367.1 17 RDVRVERLWSKLDPSGKGELDLKGLRKGFRRIDHPLKNASDLLKQIMREVDtNRDGKIQYEEFRVFVQ 84
                    599*****************************************999887635566677555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4436.39
//
Query:       CCE27368.1  [L=326]
Description: related to cyclin homolog UME3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-11   42.9   0.7    6.3e-11   42.1   0.2    1.7  2  Cyclin_N         Cyclin, N-terminal domain
  ------ inclusion threshold ------
       0.07   13.2   2.6       0.44   10.6   0.3    3.1  3  Pro_Al_protease  Alpha-lytic protease prodomain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.2     7e-15   6.3e-11      38     123 ..      55     145 ..      15     149 .. 0.84
   2 ?   -2.8   0.0      0.57   5.1e+03      86     117 ..     263     295 ..     260     302 .. 0.65

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 7e-15
                 HHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHHHHT....TT..SS-HHHHHHHHHHHHHHTT CS
    Cyclin_N  38 lvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlvyit....de..afteeeilemErliLetLn 123
                 l+++a++++++++ +++a +yl Rf+ k  ++ ++  lv +t+++lA+K+ee+ p +++ +v  +    ++    + ++i e E ++++++ 
  CCE27368.1  55 LLRLANRLSIRQQAIATAQVYLKRFYIKVPIRSTNPYLVITTSMYLACKMEEA-PQHIRLIVTEArtlwQDfiGLDTSKIGECEFYMISEMS 145
                 899*************************************************9.99999998888666533567777888888877777665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.57
                 HHHSSS---HHHHHHHTTT.SS-HHHHHHHHHH CS
    Cyclin_N  86 Kveeisppkledlvyitde.afteeeilemErl 117
                 K +e+++ ++++++ +  +  ++   ++++ ++
  CCE27368.1 263 KQQETRMARVQHFAAWLADsGVDVAAMVDATQE 295
                 557888888888887764435665555555555 PP

>> Pro_Al_protease  Alpha-lytic protease prodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.094   8.4e+02       1      14 [.      16      29 ..      16      34 .. 0.87
   2 ?    2.8   0.2     0.013   1.2e+02      36      58 ..     204     227 ..     203     228 .. 0.85
   3 ?   10.6   0.3   4.9e-05      0.44       3      33 ..     223     255 ..     222     256 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.094
  Pro_Al_protease  1 hSlaeLdaakaaLd 14
                     +S +eL + +++Ld
       CCE27368.1 16 FSKDELASMRQKLD 29
                     5889*********9 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.013
  Pro_Al_protease  36 VVVtadsgvtaa.aealaaaAgvd 58 
                      VV+  +s+++++ a   aaaAg++
       CCE27368.1 204 VVLRPNSTAPGQtASGSAAAAGLA 227
                      899999******888889999876 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 4.9e-05
  Pro_Al_protease   3 laeLdaakaaLdraaaraa..aavtaWyVDvat 33 
                      +a L aa+aaL +a+ r++  +++ +  VD+ +
       CCE27368.1 223 AAGLAAAQAALSQAQSRISqgGGGGVSTVDPVS 255
                      588****************99999999***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2509.22
//
Query:       CCE27369.1  [L=137]
Description: uncharacterized protein CPUR_00843 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-54  181.8   7.9    1.1e-53  181.6   7.9    1.0  1  DUF4452   Domain of unknown function (DUF4452)


Domain annotation for each model (and alignments):
>> DUF4452  Domain of unknown function (DUF4452)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6   7.9   5.9e-58   1.1e-53      29     165 ..       1     131 [.       1     136 [. 0.96

  Alignments for each domain:
  == domain 1  score: 181.6 bits;  conditional E-value: 5.9e-58
     DUF4452  29 lkelaeaaaltafrakfeagrsFdleDDleFCPnLLteddlvsihssssdRssLssgsPessPlqtqvqpqqvapslslssassayipasyqsqaselk 127
                 +k+l+e a+l+ fr kfeagrsFdleDD+eFCP+LLte+dl  +  s+s+RssL+s+sP+ssP+q   qpq+va++ sl+s+++a+ + s+qsq+s+ k
  CCE27369.1   1 MKDLVEPASLSVFRVKFEAGRSFDLEDDMEFCPSLLTESDLFYM--SASERSSLASNSPDSSPTQ---QPQTVATGTSLNSSTAAFAS-SFQSQHSSPK 93 
                 89***************************************998..8******************...******************88.8999999*** PP

     DUF4452 128 lhqPsatRtrnaiPivnPstgisvssPpssvsParmqq 165
                 l qP+atR rnaiPi+nP tgis+ssPp svsPa +q+
  CCE27369.1  94 LFQPAATRGRNAIPIINPVTGISMSSPPLSVSPAALQN 131
                 **********************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1086.93
//
Query:       CCE27370.1  [L=111]
Description: uncharacterized protein CPUR_00844 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1093  (0.0609627); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.29s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 773.03
//
Query:       CCE27371.1  [L=192]
Description: uncharacterized protein CPUR_00845 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1434.38
//
Query:       CCE27372.1  [L=287]
Description: related to PET8 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-43  144.4   5.9    3.7e-17   62.0   0.1    4.1  4  Mito_carr        Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.07   12.3   0.6       0.13   11.4   0.1    1.8  2  Serine_protease  Gammaproteobacterial serine protease


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   9.7e-10   8.7e-06       4      37 ..       5      38 ..       2      44 .. 0.91
   2 !   23.4   0.1   4.6e-09   4.1e-05      58      95 ..      43      80 ..      39      82 .. 0.93
   3 !   34.3   0.0   1.9e-12   1.7e-08       5      91 ..      90     179 ..      87     184 .. 0.83
   4 !   62.0   0.1   4.2e-21   3.7e-17       2      93 ..     199     284 ..     198     286 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 9.7e-10
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
   Mito_carr  4 svlkellaGglagavatlvttPldvvKtrlqtqk 37
                s+++ llaG+lag++  l  +Pld++Ktrlq+++
  CCE27372.1  5 SFQSALLAGALAGTTVDLSLFPLDTLKTRLQSSA 38
                78899**************************986 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 4.6e-09
                HHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr 58 eeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95
                + G++g yrG++ +++++ap +a  f +ye  k +l  
  CCE27372.1 43 SGGFSGIYRGIGSAVVGSAPGAAFFFCTYEASKAYLSS 80
                67*******************************99976 PP

  == domain 3  score: 34.3 bits;  conditional E-value: 1.9e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHG.........GGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrg.........lyrGllpnllrvapasalkfvlyetlkr 91 
                 ++ +++a++l+ ++a  v  P++vvK r q+  + ++++       +l+ i+   G  g         lyrG++++++r +p ++++f l e +k 
  CCE27372.1  90 PVTHMVAASLGEVAACAVRVPTEVVKQRAQAGLHGGNSA------AALRAILARYGAEGgglltvwreLYRGWGITVFREVPFTVIQFPLWEAMKG 179
                 6789***************************98888763......35555555555555555677888***********************99986 PP

  == domain 4  score: 62.0 bits;  conditional E-value: 4.2e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 ++s++++ l G++ag v++ +ttPldv+Ktr+++++++ +      +++v++++++eeG r ++ Gl p+++++++  a+ +++y+   ++l
  CCE27372.1 199 DVSAVESGLYGSVAGGVSAAATTPLDVLKTRVMLSRERVS------VAHVFSSMVREEGWRPFFAGLAPRVTWISIGGAIFLGSYQWAVNIL 284
                 57889999******************************87......89*************************************9887765 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.4e-05      0.13      15      68 ..      18      66 ..       6     107 .. 0.82
   2 ?   -3.4   0.0      0.47   4.2e+03     180     203 ..     209     232 ..     204     237 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.4e-05
  Serine_protease 15 fsvsaltsPfkalLtnlqkdgsvlpsaysgGlfralYrGflayalagskrrava 68
                     ++v     P+ +l t+lq +  + p   sgG f ++YrG+++ a+ gs+ +a+ 
       CCE27372.1 18 TTVDLSLFPLDTLKTRLQSSAGFFP---SGG-FSGIYRGIGS-AVVGSAPGAAF 66
                     556666679*********9999999...778.99********.******99986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.47
  Serine_protease 180 GalsGviAtvlttifnsykDkkll 203
                      G ++G + +  tt++  +k + +l
       CCE27372.1 209 GSVAGGVSAAATTPLDVLKTRVML 232
                      777888888888888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2234.58
//
Query:       CCE27373.1  [L=1008]
Description: uncharacterized protein CPUR_00847 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-53  181.3   0.0      3e-53  180.2   0.0    1.6  1  DUF3337        Domain of unknown function (DUF3337)
    1.4e-15   57.3  12.4     0.0012   19.7   0.2    5.8  5  WD40           WD domain, G-beta repeat
     0.0071   15.1   0.1      0.022   13.4   0.0    1.8  2  Nup160         Nucleoporin Nup120/160
  ------ inclusion threshold ------
       0.02   13.6   0.1        3.3    6.3   0.0    2.4  2  Nucleoporin_N  Nup133 N terminal like


Domain annotation for each model (and alignments):
>> DUF3337  Domain of unknown function (DUF3337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   0.0   6.6e-57     3e-53       1     171 [.     811     963 ..     811     964 .. 0.92

  Alignments for each domain:
  == domain 1  score: 180.2 bits;  conditional E-value: 6.6e-57
     DUF3337   1 lPkdtliiiseespesgnvrdlyrgtvgdlgedvdlleevlPsWllevllenkipikesvkisFvLlplpssklkedklpelek..knsrLtanrmLrv 97 
                 lP+ t+iii+ee  +sg+++++y+gtv+++g d+d++e+++P+Wl+evll+n ip k++vkisFvL+pl         lp+l+   +nsrL+anrmLrv
  CCE27373.1 811 LPPGTKIIIQEE--TSGGSANVYQGTVENVGYDADVIEKKAPMWLGEVLLQNLIPSKDPVKISFVLHPLG-------DLPALSPaeGNSRLNANRMLRV 900
                 69**********..9******************************************************2.......35665554569*********** PP

     DUF3337  98 rKileyvaeklekktkeskasseeeekeeedkklkpeeklellCndqvlpptmtLatvktfiWkssgDlvlhYr 171
                 +Kil+yvae++e+  +e             +++l pe++lel+Cndq+l+p m+Lat++t++Wks++D+vl+Y+
  CCE27373.1 901 KKILAYVAERIEEGGDEAI-----------ADQLAPENYLELYCNDQLLDPLMSLATIRTHVWKSGNDVVLYYK 963
                 ************5555433...........45799**************************************9 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00016      0.71       8      38 .]      21      52 ..      14      52 .. 0.91
   2 !    9.3   0.1   0.00049       2.2       8      37 ..      82     110 ..      74     111 .. 0.72
   3 !   18.9   0.1   4.5e-07     0.002      10      38 .]     127     159 ..     121     159 .. 0.90
   4 !   19.7   0.2   2.6e-07    0.0012       2      38 .]     210     247 ..     209     247 .. 0.90
   5 ?    2.6   0.0     0.063   2.8e+02       1      16 [.     251     267 ..     251     287 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
                ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38
                 GH  +v++l ++ ++  l +G++Dg v  Wd
  CCE27373.1 21 GGHrLGVNGLVVDANNGILYTGGRDGIVCAWD 52
                499777*************************9 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00049
                 ESSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   8 tGHssvtslafspdgawlasGsdDgtvriW 37 
                  +H +++++   ++ + l+s+s D tv++W
  CCE27373.1  82 HTH-WINDITLAQNDTALVSASSDLTVKVW 110
                 356.7999985666666677766******* PP

  == domain 3  score: 18.9 bits;  conditional E-value: 4.5e-07
                 S.SSEEEEE...EETTSSEEEEEETTSEEEEEE CS
        WD40  10 H.ssvtsla...fspdgawlasGsdDgtvriWd 38 
                 H + v ++a    + +g+w+asG+ D+++ +Wd
  CCE27373.1 127 HaDYVKCVAtppAHMNGNWVASGGLDRKICLWD 159
                 8555999999999*******************9 PP

  == domain 4  score: 19.7 bits;  conditional E-value: 2.6e-07
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++ +l GH ++++s+  ++ g+ ++s+s D+t+++W+
  CCE27373.1 210 DKISKLVGHlDNIRSILIDDAGDIILSASSDKTIKMWS 247
                 5678899**999*************99988*******5 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.063
                 TEEEEEEESS.SSEEEE CS
        WD40   1 gqclrtltGH.ssvtsl 16 
                 g+c++t+t H  s++sl
  CCE27373.1 251 GRCMYTFTMHdESIWSL 267
                 68********888***9 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.2   9.2e+02     219     245 ..      83     110 ..      40     118 .. 0.81
   2 !   13.4   0.0   4.9e-06     0.022     231     269 ..     232     263 ..     214     307 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.2
                 EEEET......TTTEEEEEETT-EEEEE CS
      Nup160 219 ldvavavvei.gqtylfalsrdgkLrvW 245
                 ++ +++++ + ++t l+++s+d +++vW
  CCE27373.1  83 THWINDITLAqNDTALVSASSDLTVKVW 110
                 445555555568999999*********9 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.9e-06
                 TEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS-- CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclatidllrdeeaqdess 269
                 ++++++s+d+++++W+++ g+c++t+++        ++s
  CCE27373.1 232 DIILSASSDKTIKMWSVRGGRCMYTFTMH-------DES 263
                 799**********************9998.......444 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0   0.00074       3.3     198     287 ..      21     103 ..       7     113 .. 0.77
   2 ?    4.6   0.1    0.0024        11     202     237 ..     220     253 ..     210     276 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00074
                    ---GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH.HHSCHTTTCGCTTT-EEEEEEES-TTTSSCEEEE CS
  Nucleoporin_N 198 asereeivqlridssrrilytlsskgvirvydlsasngesslksdidirqilleaitesliasaplaskslkildispvsaeessllhlv 287
                    +  r  +  l++d   +ilyt  ++g + ++dl      s++ + +d++ + ++a   s++  + + + + +i di++ +++ + ++   
     CCE27373.1  21 GGHRLGVNGLVVDANNGILYTGGRDGIVCAWDLD----LSRKPGVVDCSANAKQA---STKFRSQAQPHTHWINDITLAQNDTALVSASS 103
                    4556677789************************....77899999999999999...44444477888999*99999999955555444 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0024
                    G-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE- CS
  Nucleoporin_N 202 eeivqlridssrrilytlsskgvirvydlsasnges 237
                    + i ++ id+   i+ ++ss+++i+++ +   +g +
     CCE27373.1 220 DNIRSILIDDAGDIILSASSDKTIKMWSVR--GGRC 253
                    57999999*******************987..4455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1008 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 6781.75
//
Query:       CCE27374.1  [L=565]
Description: related to P element somatic inhibitor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-45  151.2  13.5    1.5e-15   56.7   0.9    3.3  3  KH_1      KH domain
    3.1e-11   42.9   2.8      0.011   15.5   0.1    3.3  3  KH_2      KH domain
      3e-08   33.4   5.1      0.048   13.5   0.2    3.4  3  KH_4      KH domain
     0.0021   18.1   4.3        1.5    8.9   0.1    3.5  4  KH_5      NusA-like KH domain
  ------ inclusion threshold ------
      0.034   14.2   0.0        1.8    8.6   0.0    2.8  3  MOEP19    KH-like RNA-binding domain


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.3   1.2e-15   4.1e-12       2      63 ..     204     267 ..     203     270 .. 0.83
   2 !   56.7   0.9   4.2e-19   1.5e-15       3      66 .]     303     366 ..     301     366 .. 0.94
   3 !   56.6   1.0   4.5e-19   1.6e-15       3      66 .]     412     475 ..     410     475 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1.2e-15
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT...T.-EEEEEE.SHHH..HHHHHHH CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpk.sedegsderevtisG.spea..vekAkel 63 
                 ++i++ sslvg+iIG+ G+n+++I++et++++++   se++  + r+++i+G  p +  v+ A+++
  CCE27374.1 204 ETIQIESSLVGLIIGRLGENLRRIEAETNCRVQFLAaSESG--PYRQCRITGpRPRRadVKTAINR 267
                 789********************************777775..*********54443445555555 PP

  == domain 2  score: 56.7 bits;  conditional E-value: 4.2e-19
                 EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT....T.-EEEEEESHHHHHHHHHHHHH CS
        KH_1   3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg.sderevtisGspeavekAkeliee 66 
                 +i vP + vg+iIG+gG++I++++e++g++I+++ +e+ + ++ r v ++G+ e+  +Ak+li+e
  CCE27374.1 303 QIMVPDRTVGLIIGRGGETIRDLQERSGCHINIV-GESKSvNGLRPVNLIGTVESAGRAKDLIME 366
                 799*******************************.777777**********************96 PP

  == domain 3  score: 56.6 bits;  conditional E-value: 4.5e-19
                 EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT....T.-EEEEEESHHHHHHHHHHHHH CS
        KH_1   3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg.sderevtisGspeavekAkeliee 66 
                 +i vPs+ vg iIGkgG++I+++++ tg+kI+v  +++++ +  re+ ++Gs++++++Ak +iee
  CCE27374.1 412 SIYVPSDAVGMIIGKGGETIRDMQNNTGCKINVA-QSSGPgEVKREIALIGSRDSIARAKLAIEE 475
                 689*****************************99.555556*******************99986 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.6e-05     0.057      27      59 ..     204     236 ..     198     265 .. 0.88
   2 !   15.5   0.1   3.2e-06     0.011      24      65 ..     299     340 ..     284     357 .. 0.82
   3 !   12.7   0.1   2.4e-05     0.087      36      59 ..     420     443 ..     409     479 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
                 EEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHH CS
        KH_2  27 viiviresqpgivIGkgGsnikkigkelrkdie 59 
                  +i i +s  g++IG+ G+n+++i++e + +++
  CCE27374.1 204 ETIQIESSLVGLIIGRLGENLRRIEAETNCRVQ 236
                 578899999*****************9988776 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 3.2e-06
                 SCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTC CS
        KH_2  24 anrviiviresqpgivIGkgGsnikkigkelrkdieklegkk 65 
                 ++   i++ +   g++IG+gG++i+ +++  +  i ++ ++k
  CCE27374.1 299 EDHMQIMVPDRTVGLIIGRGGETIRDLQERSGCHINIVGESK 340
                 478889999999*****************9998887766665 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 2.4e-05
                 HHHHHTGGGHHHHHHHHHHHHHHH CS
        KH_2  36 pgivIGkgGsnikkigkelrkdie 59 
                  g++IGkgG++i+ ++ + + +i 
  CCE27374.1 420 VGMIIGKGGETIRDMQNNTGCKIN 443
                 79***********99998887774 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.2   0.00071       2.5      31      52 ..     204     225 ..     197     229 .. 0.84
   2 !   13.5   0.2   1.3e-05     0.048      26      55 ..     297     326 ..     289     328 .. 0.89
   3 !   12.2   0.0   3.5e-05      0.12      32      55 ..     412     435 ..     405     443 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00071
        KH_4  31 ielnvegedlGrvIGkrGrtld 52 
                  ++++e++ +G++IG+ G++l+
  CCE27374.1 204 ETIQIESSLVGLIIGRLGENLR 225
                 578999*************996 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.3e-05
        KH_4  26 eeeveielnvegedlGrvIGkrGrtldAlq 55 
                 eee+ +++ v    +G++IG+ G+t++ lq
  CCE27374.1 297 EEEDHMQIMVPDRTVGLIIGRGGETIRDLQ 326
                 67889999999***************9777 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 3.5e-05
        KH_4  32 elnvegedlGrvIGkrGrtldAlq 55 
                  ++v ++ +G +IGk G+t++ +q
  CCE27374.1 412 SIYVPSDAVGMIIGKGGETIRDMQ 435
                 5789999*************8776 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.082   2.9e+02      18      37 ..     212     231 ..     202     243 .. 0.81
   2 !    7.0   0.1    0.0017       6.2       3      50 ..     300     341 ..     298     350 .. 0.84
   3 !    8.9   0.1   0.00043       1.5      17      46 ..     418     446 ..     413     450 .. 0.91
   4 ?   -3.6   0.0       3.5   1.3e+04       9      45 ..     473     480 ..     460     483 .. 0.60

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.082
        KH_5  18 pvGaivgkkGsrikavsseL 37 
                  vG i+g+ G++ + ++ e 
  CCE27374.1 212 LVGLIIGRLGENLRRIEAET 231
                 499***********999886 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0017
        KH_5   3 ertkvaVkshnpnvdpvGaivgkkGsrikavsseLkgekidvvewseD 50 
                 + + ++V ++      vG i+g++G+ i+ + +   g  i +v +s+ 
  CCE27374.1 300 DHMQIMVPDRT-----VGLIIGRGGETIRDLQERS-GCHINIVGESKS 341
                 56778888888.....**************99887.999999988765 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00043
        KH_5  17 dpvGaivgkkGsrikavsseLkgekidvve 46 
                 d+vG i+gk+G+ i+   +   g ki v +
  CCE27374.1 418 DAVGMIIGKGGETIRDMQNNT-GCKINVAQ 446
                 89***************9999.99999987 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 3.5
        KH_5   9 VkshnpnvdpvGaivgkkGsrikavsseLkgekidvv 45 
                 +                             +ek+d v
  CCE27374.1 473 I-----------------------------EEKVDTV 480
                 2.............................5666655 PP

>> MOEP19  KH-like RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00051       1.8      15      74 ..     204     264 ..     201     270 .. 0.76
   2 ?   -0.7   0.0      0.41   1.5e+03      18      76 ..     305     365 ..     299     371 .. 0.63
   3 ?    1.6   0.0     0.078   2.8e+02      17      64 ..     413     462 ..     411     483 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00051
      MOEP19  15 lvfyleawlleaiFGpdgeripeiEqvsqtlle.vkaldseglaeilifGrprykkrvkkm 74 
                 +++++e+ l+ +i G+ ge+++ iE   +  ++ + a +s    +  i G++  + +vk+ 
  CCE27374.1 204 ETIQIESSLVGLIIGRLGENLRRIEAETNCRVQfLAASESGPYRQCRITGPRPRRADVKTA 264
                 6799*********************998876662444555555666677777777777765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.41
      MOEP19  18 yleawlleaiFGpdgeripeiEqvsqtlle.vkalds.eglaeilifGrprykkrvkkmll 76 
                  +  + + +i G+ ge i+ ++  s   ++ v   +s +gl  +   G  +   r+k++++
  CCE27374.1 305 MVPDRTVGLIIGRGGETIRDLQERSGCHINiVGESKSvNGLRPVNLIGTVESAGRAKDLIM 365
                 5667778899999999999988777655541233344455555555555555555555555 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.078
      MOEP19  17 fyleawlleaiFGpdgeripeiEqvsqtllevkalds..eglaeilifGr 64 
                 +y+ ++ + +i G+ ge i+ ++      ++v +     e + ei   G+
  CCE27374.1 413 IYVPSDAVGMIIGKGGETIRDMQNNTGCKINVAQSSGpgEVKREIALIGS 462
                 689999999***********999877777777655542334445666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 4165.70
//
Query:       CCE27375.1  [L=451]
Description: related to acid proteinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-37  128.2   0.0    6.5e-37  127.6   0.0    1.2  1  Asp             Eukaryotic aspartyl protease
    5.7e-05   23.7   0.0       0.92   10.2   0.0    3.2  3  Asp_protease_2  Aspartyl protease
  ------ inclusion threshold ------
       0.01   15.6   0.0       0.31   10.8   0.0    2.3  1  TAXi_C          Xylanase inhibitor C-terminal
      0.053   13.8   2.7       0.77   10.0   2.8    2.8  2  TAXi_N          Xylanase inhibitor N-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.6   0.0   1.4e-40   6.5e-37      14     312 ..     119     447 ..     107     449 .. 0.84

  Alignments for each domain:
  == domain 1  score: 127.6 bits;  conditional E-value: 1.4e-40
                 EEEEEEETT--SEEEEBTT..EST...SHCHHTSS-B-GGG-TT-EE...EEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEEEEEESSHHHTT CS
                 xxxxxxxxxxxxxxxxxxx..xxx...xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp  14 kftvifDTGSsdlWVpssk..ckk...ssackshstydpskSstykk...ngkslsisYGdg.svsGflsqdtvkvggltvknqefgeatkepgstfla 103
                    +++DTGSsd+W ++s+  c+     + + s   + p++   +++   ++ ++s++YG+g +vsG +++  ++ gg+ vk+q+ g+a+ ++ +   +
  CCE27375.1 119 PVWLLLDTGSSDTWAVQSDfaCHDaqgAQHSASDCSFGPNSVPGFREgpiDNLHFSLRYGSGeHVSGPMGHSDIACGGVAVKGQQAGLANDTYWH--GN 215
                 56689***********99977554211233445556999999999953447999************************************99995..55 PP

                 SSSSEEEE-S-GGGSCGG..............SCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGE.EEEEEEEEESS.......TSSTE CS
                 xxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.......xxxxx RF
         Asp 104 akfdGiLGlgfkeisvee..............atpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDesky.kGsltyvpvts.......kgywq 180
                   + GiLGl+++++++                 +p+f n v qg i+ pvfsv l  ++++ g i +Gg+ +s   + + +++++         +  wq
  CCE27375.1 216 NFTVGILGLAYPSLTSAYygaigdeaawnavqYVPFFTNAVMQGTID-PVFSVALM-KNSSDGIIAWGGLPPSLAhSDDYAATDLIVanmfgsaESSWQ 312
                 5578**********9999999999999999877788**********7.9******7.999**********99865156677777666567778777799 PP

                 EEEEEEEETTEEE...EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEE..ETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTT. CS
                 xxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
         Asp 181 ielesvtvggktv...lcssgcqailDtGTsllalptsivekiakaigakks..esegeyvvdCdslsslpdisftiggakitvpvselvlkeeesee. 273
                  +   +  +g +    + ++++  ++DtGT+l +lp   +e+ia a++ +++   + g y+  Cds    p ++++i+g+++ +++ +l++++  + + 
  CCE27375.1 313 YSFYTIIPDGIKWgqmSDETKYPYVVDTGTTLNYLPPPLAEAIAAAFQPRAVylYQFGAYFAPCDS--IPPRFAVVISGVEFWINPADLIYRDMVDPTt 409
                 99988877766555557899***************************987762234699******8..7899******************999876555 PP

                 SEEEESEEECCTSSSEEEEHHHHTTEEEEEETTTTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 274 sqCilglvseeegdlwiLGdvFlrsayvvfdldnnrvgl 312
                 ++C +++ ++ ++  +iLGdvFl+++ +vfd++  ++ +
  CCE27375.1 410 GYCAVAI-ASGGSGPYILGDVFLQNVVSVFDVGGAEMRF 447
                 9******.999999*****************99877665 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00021      0.92       2      22 ..     112     132 ..     111     150 .. 0.80
   2 ?   -0.2   0.0      0.36   1.6e+03      56      88 ..     187     224 ..     170     226 .. 0.78
   3 !    8.9   0.0   0.00051       2.3       7      36 ..     331     360 ..     326     368 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
  Asp_protease_2   2 pvtinGkpvrfllDTGasttl 22 
                     ++  +G+pv++llDTG+s t 
      CCE27375.1 112 QCGWDGVPVWLLLDTGSSDTW 132
                     56679*************873 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.36
  Asp_protease_2  56 vrldslklggltlknvpalvld.....lgeeidglLGm 88 
                     +   ++  gg+ +k+++a  ++     +++++ g+LG+
      CCE27375.1 187 MGHSDIACGGVAVKGQQAGLANdtywhGNNFTVGILGL 224
                     445689999*******9999998888777888999996 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00051
  Asp_protease_2   7 GkpvrfllDTGasttlispelaeklglkvr 36 
                     ++++ +++DTG + ++++p lae++    +
      CCE27375.1 331 ETKYPYVVDTGTTLNYLPPPLAEAIAAAFQ 360
                     46899******************9876655 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.9e-05      0.31      92     159 ..     380     447 ..     324     449 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.9e-05
                 ---EEEEESSS-EEEE-GGGGEEE-SSS...EEEE-EEE--S--SSSEEE-HHHHBTS-EEEETTTTEEEE CS
      TAXi_C  92 vPtitlvleggaewtisgenllvkvegg...vvClafvesgvagesavviGglqlednllvFDleksrlgF 159
                  P + +v   g e++i++++l+++   +    +C   + s   g++++++G + l++++ vFD+   +++F
  CCE27375.1 380 PPRFAVVIS-GVEFWINPADLIYRDMVDpttGYCAVAIAS--GGSGPYILGDVFLQNVVSVFDVGGAEMRF 447
                 456666666.678888888887765522223456554444..59********************9999998 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.8   0.00017      0.77       4     139 ..     110     225 ..     108     282 .. 0.67
   2 ?   -1.2   0.0      0.45     2e+03      10      29 ..     330     349 ..     323     365 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00017
      TAXi_N   4 sisiGtppqplklvvDtGsdltW.vqCkpckacssqkkpvfdpsksstykavpcssslCkaceasssak.sgsssstceyeisygadgssssGvlatdt 100
                 +i+ G  ++p++l++DtGs+ tW vq +  +               +  +  + s s C+    +s +  ++ + ++ +++ +yg  g ++sG +++  
  CCE27375.1 110 AIQCGWDGVPVWLLLDTGSSDTWaVQSDFAC---------------HDAQGAQHSASDCS-FGPNSVPGfREGPIDNLHFSLRYG-SGEHVSGPMGHSD 191
                 57889999***************77876555...............22333333444444.222222222555556666666665.5556666666666 PP

      TAXi_N 101 ltlsstdgksvkvpnlvfGCgksnlgglaagadGilGLG 139
                 ++      ++v v+    G ++++  + ++ + GilGL+
  CCE27375.1 192 IAC-----GGVAVKGQQAGLANDTYWHGNNFTVGILGLA 225
                 666.....5566666666666533333333456666665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.45
      TAXi_N  10 ppqplklvvDtGsdltWvqC 29 
                   +++  vvDtG  l ++  
  CCE27375.1 330 DETKYPYVVDTGTTLNYLPP 349
                 5678999*****99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3785.92
//
Query:       CCE27376.1  [L=443]
Description: probable fructose-2,6-bisphosphate 2-phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-78  260.6   0.1    1.2e-77  260.2   0.1    1.1  1  6PF2K       6-phosphofructo-2-kinase
    2.1e-34  118.9   0.0    3.4e-34  118.3   0.0    1.3  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)
    0.00018   21.7   0.0    0.00035   20.7   0.0    1.6  1  AAA_33      AAA domain
  ------ inclusion threshold ------
      0.018   14.5   0.0      0.029   13.8   0.0    1.2  1  KTI12       Chromatin associated protein KTI12


Domain annotation for each model (and alignments):
>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.2   0.1   2.7e-81   1.2e-77       8     223 .]      12     226 ..       6     226 .. 0.96

  Alignments for each domain:
  == domain 1  score: 260.2 bits;  conditional E-value: 2.7e-81
                 HT..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS---GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--SEEEEES-- CS
       6PF2K   8 nlknsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyrreaskalsdaeffrpdneealklreklalaalkdllaylneeegqvaifDAtN 106
                 + +++k+++v+vGLpargK+yi++   ryl+wl++++++Fnvg+yrr+ + +   a+ff+++n+e+ ++r+ +a aa+ d++a++   +g v+i DAtN
  CCE27376.1  12 RVEDTKICVVMVGLPARGKSYIAQIAQRYLQWLSIPAQTFNVGNYRRSDAPQ-PTADFFDTNNAEGERKRRAAAEAAVADMFAWFR-TGGVVGILDATN 108
                 56899*******************************************9998.5799****************************9.89********** PP

                 -SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHHHTTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----.TTTTTTSEEEEEETTTTEEEEE-- CS
       6PF2K 107 ttrerRklilefveennlkvlflesicsdeeiikeNikevklsspDYkdketeeaikdflkRlenyekqyepld.deedeelsyIkvidvgkslvvnnv 204
                 +t+erRk++ +++++n+++vlf+es c+d+++i +Ni++vk++spDY ++++e a +dfl+R+++yek+y  ld d ++ e +y+k+++ gk++++n++
  CCE27376.1 109 STKERRKWVNDICTKNGIEVLFVESKCDDQDVIMANIRDVKTTSPDYRGQDPEAAAHDFLNRISKYEKTYVTLDqDGDEDEYTYLKIMNLGKQVIINRI 207
                 **************************************************************************77777899***************** PP

                 -SHHHHHHHHHHTT---S- CS
       6PF2K 205 qgylqsrivyyllNihlkp 223
                 q+yl+srivyyl+N+h  p
  CCE27376.1 208 QDYLESRIVYYLMNLHIRP 226
                 ***************9876 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.0   7.5e-38   3.4e-34       1     191 [.     229     416 ..     229     419 .. 0.92

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 7.5e-38
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT.S---EE...EE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHH CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag.epidai...ysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiae 95 
                 ++L RHGe+ +n +gr++g  d+ L+++G++  ++l e +++ ++ d+    ++S+lkR++ Ta+ +   l+ +  ++++L+E+d G+++glt++ei++
  CCE27376.1 229 VWLSRHGESIYNLDGRIGG--DSMLSPRGEQYGRKLPELVREsVGDDRPltvWTSTLKRTIATARSLP--LHYNQLQWKALDELDSGVCDGLTYQEIKD 323
                 69************98876..99****************9997444444666*************998..5688999********************** PP

                 H..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS-EEEEEE CS
  His_Phos_1  96 eypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleelrrleldnaslsvlefdeggwrlvrl 191
                 +ype+++a+++d++++r+ ggEs++dv+ R+++++ el+++++   +l+V+H++v+r+++a++++ + ++ + ++++ ++l +l+ ++ g + vr+
  CCE27376.1 324 QYPEDFAARDEDKYNYRYRGGESYRDVVIRLEPIIMELERSED---ILIVTHQAVLRCIYAYFMKKDQAKSPWMNVPLHTLIKLTPRAYGTEEVRY 416
                 **************************************99986...**************************************999988776665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   7.8e-08   0.00035       2     109 ..      20     138 ..      19     173 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 7.8e-08
      AAA_33   2 vllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfgtdqqskt..........dytrvldrlyqilnelarkalsagrnvildatnlsrrer 85 
                 v++vGlp+ GKs+ a+   + l+     a++ +  ++rr  +    +++t             + +  + + ++++++  ++ g   ildatn ++++r
  CCE27376.1  20 VVMVGLPARGKSYIAQIAQRYLQwlsipAQTFNVGNYRRSDA----PQPTadffdtnnaeGERKRRAAAEAAVADMFAWFRTGGVVGILDATNSTKERR 114
                 89**********988754433341114444444444444333....33333444443333333455567888899999999****************** PP

      AAA_33  86 arflklarrlgvpvrivvvetdee 109
                 +++  +  + g +v+ v  ++d++
  CCE27376.1 115 KWVNDICTKNGIEVLFVESKCDDQ 138
                 ***********9999999999875 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.4e-06     0.029       4     116 ..      20     144 ..      19     185 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.4e-06
                 EEEE--TTSSHHHHHHHHHHHHHH.....TT--EEEE-THHHH.........TTSSS--GGGHHHHHHHHHHHHHHHH...TT.SEE.EE-S---SHHH CS
       KTI12   4 vvltGlPssGKstrakeLakalee.....ekrsvvviddeslg........iekdsykdsakekalRsslrsavkrdL...skekvV.IvDslnyikgf 85 
                 vv+ GlP+ GKs +a+  +++l+      +  +v       ++         +  + ++++ e++ R++  +av+       +  vV I+D++n +k  
  CCE27376.1  20 VVMVGLPARGKSYIAQIAQRYLQWlsipaQTFNV-----GNYRrsdapqptADFFDTNNAEGERKRRAAAEAAVADMFawfRTGGVVgILDATNSTKER 113
                 89********************996665533333.....333322222232333346678889999********98862223444555*********99 PP

                 HHHHHHHHHHTT-EEEEEEEE--HHHHHHHH CS
       KTI12  86 RYeLyciakaakttlcvvyvvapldvlvkwn 116
                 R  +  i+ +  +++  v  +++ + ++  n
  CCE27376.1 114 RKWVNDICTKNGIEVLFVESKCDDQDVIMAN 144
                 9999999999999998888888866666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3331.37
//
Query:       CCE27377.1  [L=183]
Description: uncharacterized protein CPUR_00851 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1378.34
//
Query:       CCE27378.1  [L=897]
Description: uncharacterized protein CPUR_00852 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-70  235.6   0.0    5.8e-70  235.6   0.0    6.9  4  LIM_bind       LIM-domain binding protein


Domain annotation for each model (and alignments):
>> LIM_bind  LIM-domain binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   4.8      0.19   3.3e+03     155     204 ..      95     146 ..      75     163 .. 0.49
   2 ?  -13.9  25.5         1   1.8e+04     155     197 ..     188     226 ..     170     235 .. 0.38
   3 ?  -73.3  96.1         1   1.8e+04     136     195 ..     223     283 ..     213     486 .. 0.76
   4 !  235.6   0.0   3.2e-74   5.8e-70       1     241 []     503     760 ..     503     760 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.19
    LIM_bind 155 esa.ssaspkvskkvskrqg.ifgklsskepaeeppeavkqlpsspvn.sfGi 204
                 +++ +++ ++ s+ +s rq  ++++ ++ ++a +   a + ++++++n  +Gi
  CCE27378.1  95 QQQlQNQYNNPSAMASIRQHqMLQQ-QQHQQARQALMAQQAIQANMQNgVNGI 146
                 2224222222233333333312222.222333333344455555555554454 PP

  == domain 2  score: -13.9 bits;  conditional E-value: 1
    LIM_bind 155 esassaspkvskkvskrqg.ifgklsskepaeeppeavkqlpss 197
                 +++++     +++++++q+ + +++++++++++++ + +q++++
  CCE27378.1 188 QQQQQ-----QQQQQQQQQqQQQQQHQQQHQQHQQHLQHQQHQQ 226
                 11111.....1111111111122222222222222333333333 PP

  == domain 3  score: -73.3 bits;  conditional E-value: 1
    LIM_bind 136 sheeliprsalekklkqllesa...ssaspkvskkvskrqg.ifgklsskepaeeppeavkqlp 195
                 +h++  + ++ +++ +q ++++   +   ++ +++++++q+ + ++++++++++++++  +q++
  CCE27378.1 223 QHQQHQQHQQHQQHQHQQHQQQqqqQ---QQQQQQQQQQQQqQQQQQQQQHQQQQQQQQQQQQH 283
                 33333333333333333333332221...11111111111111111111111111111111111 PP

  == domain 4  score: 235.6 bits;  conditional E-value: 3.2e-74
    LIM_bind   1 lrllelierlsnrs..nedsdieyWrkfvaefFspdavlrltlkldeqek.epkqFeittpllPryfrtlfesgvkslqlild.gareqvlsngsivle 95 
                 l+l++++e+ls +   + ++di+yW+ fva+fFs ++v+r++l+ +e+e+   kq+ei++++++ry++t+f sgv+s+qli+d g+++++ + + +++e
  CCE27378.1 503 LKLMQFAEHLSGFPgsKANDDISYWNGFVARFFSTSGVFRHSLHITEDEQsMDKQYEIAFAAIARYLHTYFVSGVRSMQLIMDkGLTDRPSPGDFHCIE 601
                 69*************9*****************************77766355********************************************** PP

    LIM_bind  96 cdkatfvytyedgsrvvlegqlrvlfdadlkIewlefavrsheeliprsalekklkqllesa....................ssaspkvskkvskrqgi 174
                 +++a+fvy+++ g ++v++g+lrv+fd+++kIe++ef +++hee+i+r+  ++++k+++++                     +++sp++skk ++rq  
  CCE27378.1 602 NQRASFVYWFDSGAHLVSTGSLRVQFDNEQKIELFEFITTGHEEYISRKLAIEAAKPAHMWFkewhklnshdnnnggssnniNKTSPELSKKPRARQL- 699
                 *******************************************************************************999999999**99999999. PP

    LIM_bind 175 fgklsskepaeeppeavkqlpsspvnsfGitesvmrfLeiaevmssmkdLmsfskknnilsPleaLk 241
                       k+p+++pp+ + +lp+s v+s G++ +v++fLei+evm +m++L+sf+++ ++++P  aL+
  CCE27378.1 700 ------KSPQTHPPDVLADLPDSAVTSKGVPFAVHQFLEIVEVMGQMNPLISFCHSYPGIGPFAALD 760
                 ......999********************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      6025  (0.336048); expected 358.6 (0.02)
Passed bias filter:                     1699  (0.0947627); expected 358.6 (0.02)
Passed Vit filter:                      1499  (0.0836076); expected 17.9 (0.001)
Passed Fwd filter:                       346  (0.0192983); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 5.25u 0.44s 00:00:05.69 Elapsed: 00:00:01.00
# Mc/sec: 2714.03
//
Query:       CCE27379.1  [L=919]
Description: uncharacterized protein CPUR_00853 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-52  175.7   2.6    3.3e-51  173.6   0.0    2.6  2  HbrB        HbrB-like
  ------ inclusion threshold ------
      0.054   13.8   3.2       0.17   12.2   3.2    1.8  1  Mis14       Kinetochore protein Mis14 like
       0.14   11.6  28.8       0.11   11.9  24.7    2.3  2  SelP_N      Selenoprotein P, N terminal region
        1.6    8.7  26.3       0.26   11.2  21.7    2.0  2  DUF2796     Protein of unknown function (DUF2796)
        4.4    6.7  13.3          1    8.8   8.9    2.0  2  PIEZO       Piezo


Domain annotation for each model (and alignments):
>> HbrB  HbrB-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   4.2       1.2   4.4e+03     117     134 ..      93     115 ..      63     135 .. 0.49
   2 !  173.6   0.0   9.3e-55   3.3e-51       3     169 .]     539     714 ..     537     714 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
        HbrB 117 skekrsaspasqassss.........s 134
                 +++++ +++++q+   +         +
  CCE27379.1  93 QQQQQ-QQQQQQH---HhhqhqhqhqH 115
                 12211.1111111...01112222220 PP

  == domain 2  score: 173.6 bits;  conditional E-value: 9.3e-55
        HbrB   3 addaWqllcvrvlplFngedlrvpiEdlnklvelhiqlvierakalsllvedleeLlstglltLenkLsqleeerllkrLveiWkffytqvlpyleavf 101
                 +d+aW+ l++++l++F+gedlr+p+Ed+n++v+ hiq++i++ + +s ++edl++Ll++g+++L+++L+ ++e+r+++ Lve+W f++t++lpy+++vf
  CCE27379.1 539 LDEAWPHLKTKLLVVFEGEDLRLPVEDINRIVQSHIQRCIHK-RCPSAILEDLRDLLANGFSILDRTLRLTPEDRVIPVLVELWLFTFTTILPYMQSVF 636
                 799***************************************.******************************************************** PP

        HbrB 102 LPLetefklssllaeskekr.........saspasqassss......sstssssksserldvrrllLiaFRDsvvlPiyerlk 169
                 LPLe+e +++++l+++++ r             +s+++  +        ++ +  +++ ldvrrl+L+a+RD vvlP+ye+lk
  CCE27379.1 637 LPLELEVSGCGVLMTPEQARdfwggasaaL---SSSGN--KakppvrGAAAPTGATTSFLDVRRLVLTAYRDIVVLPRYETLK 714
                 ******************998888764331...22222..123566656677889999**********************995 PP

>> Mis14  Kinetochore protein Mis14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.2   4.7e-05      0.17      38     119 ..      42     120 ..      27     131 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCT--HHHHH--..------SSSHHHHHHHHHHHHHH CS
       Mis14  38 lnekvrslyqelEdltvevAqlRreaPrkiaeayakelkaeleeldeyleainelekqekkdpeeddededekerleelvkq 119
                 l+++v    + lEd  v++AqlRr  P   a    ++++++++  ++    ++++++q+++++++  + +  ++++++ + q
  CCE27379.1  42 LQTNVSGYQDVLEDPSVTIAQLRRR-PESPATPIYNQFSTAHANTSS--SSVQKQQQQQQQQQQQHHHHQHQHQHQHQHQHQ 120
                 666777777889************8.666666666778888888888..688888885555555555555555555554444 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  24.7   2.9e-05      0.11     163     209 ..      85     130 ..      73     147 .. 0.40
   2 ?    0.4   0.1       0.1   3.6e+02     170     219 ..     406     454 ..     378     460 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.9e-05
      SelP_N 163 eckevtkaaeekpaeaeektehehahshkqghkhhekhghhHkekee 209
                 ++++++ ++++++++++++++h+h+h+h+++h+h+++h+h+H+++++
  CCE27379.1  85 TSSSSV-QKQQQQQQQQQQQHHHHQHQHQHQHQHQHQHQHQHQQHQN 130
                 111212.1222222222233333333333344444444444444333 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.1
      SelP_N 170 aaeekpaeaeektehehahshkqghkhhekhghhHkekeelses.qqeepe 219
                 ++ +  +e+  + +++++++h  + ++++ +++ H + ++ s++ + ++p+
  CCE27379.1 406 RPMDMLSEE--RAKEKEKKHHFLSRQKQKLKDEYHLPLSSASSNsRPTDPN 454
                 333333333..3333333444456666666666777744444430333344 PP

>> DUF2796  Protein of unknown function (DUF2796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  21.7   7.3e-05      0.26      66     117 ..      81     132 ..      61     134 .. 0.65
   2 ?   -3.0   0.1       1.8   6.4e+03      32      56 ..     412     436 ..     405     443 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.3e-05
     DUF2796  66 akCkleeaevessleeeeedeeeeed.ehdheheees.kkkdhdheeaeHsdie 117
                 a+ ++++ +v+ + ++++++++++++ +h+h+h+  + ++++h+h++++H++++
  CCE27379.1  81 AHANTSSSSVQKQQQQQQQQQQQHHHhQHQHQHQ--HqHQHQHQHQHQQHQNFS 132
                 4555555666655555444443333224444444..346999999******986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
     DUF2796  32 GFEhapetdeqkaklakavakLeka 56 
                   E+a e+++ ++ l+++++kL+++
  CCE27379.1 412 SEERAKEKEKKHHFLSRQKQKLKDE 436
                 4455555555555555556655554 PP

>> PIEZO  Piezo
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.9   0.00029         1     123     221 ..      91     204 ..      77     229 .. 0.51
   2 ?   -1.2   0.1      0.33   1.2e+03     102     128 ..     413     439 ..     401     459 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00029
       PIEZO 123 kakqqkikkgkkeseeeelakeeeeeeeeaeeekkksekkkwwr................PwvdhasvvrsgdYylFesdseeeeeeeekeeeepkkks 205
                 +++qq+ +++++++++++ +++++++++++++++++++++++ r                P+++ +s ++s    lF+s      +++ ++ +  ++  
  CCE27379.1  91 QKQQQQQQQQQQQHHHHQ-HQHQHQHQHQHQHQHQHQQHQNFSRpapgatsrftapslspPLLKSSSRKHSATQGLFDSTLPSTSTSNLSQVSMNTTAG 188
                 334443333333333333.22222223334444444455555556666666666777777999999999999999999665444443332222222222 PP

       PIEZO 206 afqlayeawvtdskta 221
                 a  +a  a ++++++a
  CCE27379.1 189 AAAMAAVAAAASANSA 204
                 3333333333333333 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.33
       PIEZO 102 karkeeekksleqlkrqmerikakqqk 128
                 ++r +e++k+ + l rq +++k++++ 
  CCE27379.1 413 EERAKEKEKKHHFLSRQKQKLKDEYHL 439
                 456677777777888888888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3301  (0.184115); expected 358.6 (0.02)
Passed bias filter:                      956  (0.0533214); expected 358.6 (0.02)
Passed Vit filter:                       237  (0.0132188); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.41u 0.40s 00:00:01.81 Elapsed: 00:00:00.54
# Mc/sec: 5138.78
//
Query:       CCE27380.1  [L=149]
Description: uncharacterized protein CPUR_00854 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-11   42.9   2.4    4.3e-11   42.9   2.4    2.5  3  Gon7       Gon7 family
  ------ inclusion threshold ------
      0.041   13.9   0.5      0.072   13.1   0.5    1.3  1  Phage_GPL  Phage head completion protein (GPL)


Domain annotation for each model (and alignments):
>> Gon7  Gon7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.55     5e+03      25      33 ..      22      30 ..       6      34 .. 0.64
   2 !    4.4   0.1    0.0042        38       2      20 ..      67      83 ..      66      89 .. 0.77
   3 !   42.9   2.4   4.8e-15   4.3e-11      48     103 ..      86     140 ..      81     145 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.55
        Gon7 25 qttngsttg 33
                +tt ++tt+
  CCE27380.1 22 NTTTTTTTK 30
                344444443 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0042
        Gon7  2 tAtYtapdieekefevdke 20
                 AtY++pd +  +f+v+k+
  CCE27380.1 67 VATYSSPDNK--HFTVTKT 83
                7*******96..7777764 PP

  == domain 3  score: 42.9 bits;  conditional E-value: 4.8e-15
        Gon7  48 kpsepkkeadaelteLseLRaqltgLQddiNefLTermeeakkkkkkvdd.keeeri 103
                 +p  +    ++++t+L++LR ++t+ Q++iN+ LT+rmee+ ++ +++++ keee+ 
  CCE27380.1  86 SPPSASP--EDKTTYLEALRKAVTETQEQINKELTARMEEDVARGTATAQdKEEENY 140
                 4444444..469******************************998877664555555 PP

>> Phage_GPL  Phage head completion protein (GPL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.5     8e-06     0.072      23      68 ..      95     140 ..      91     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8e-06
   Phage_GPL  23 gtvteerlraalleAiaevnaeLaawrakqqaaGyatlaavpaeei 68 
                 +t   e lr+a++e+  ++n+eL+a  ++  a+G at+++ ++e+ 
  CCE27380.1  95 KTTYLEALRKAVTETQEQINKELTARMEEDVARGTATAQDKEEENY 140
                 5666799*******************************99877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1620  (0.0903564); expected 358.6 (0.02)
Passed bias filter:                      715  (0.0398795); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1084.14
//
Query:       CCE27381.1  [L=1094]
Description: uncharacterized protein CPUR_00855 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-34  118.7   0.1    2.2e-33  114.8   0.0    3.0  3  Vps39_1      Vacuolar sorting protein 39 domain 1
    7.6e-27   93.9   0.0      3e-26   92.0   0.0    2.1  1  Vps39_2      Vacuolar sorting protein 39 domain 2
    2.1e-16   60.4   0.0    9.3e-16   58.2   0.0    2.1  2  CNH          CNH domain
    0.00016   21.6   1.4      0.002   18.0   0.2    2.8  3  Clathrin     Region in Clathrin and VPS
     0.0014   19.1   1.7       0.93   10.0   0.1    3.7  3  TPR_19       Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   16.0   0.9        1.1    9.5   0.0    3.4  3  ANAPC3       Anaphase-promoting complex, cyclosome, subunit 3
      0.022   14.8   2.7         72    3.9   0.1    4.5  4  TPR_2        Tetratricopeptide repeat
      0.031   14.1   5.2        3.9    7.5   0.3    4.2  4  TPR_1        Tetratricopeptide repeat
        0.1   12.4   0.2       0.28   11.0   0.2    1.7  1  Cnd1_N       non-SMC mitotic condensation complex subunit 1, 
       0.15   12.1   0.2       0.43   10.6   0.2    1.8  1  Mad3_BUB1_I  Mad3/BUB1 homology region 1


Domain annotation for each model (and alignments):
>> Vps39_1  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       3.5   6.2e+03      18      63 ..     405     448 ..     395     452 .. 0.65
   2 !  114.8   0.0   1.2e-36   2.2e-33       1     108 []     652     758 ..     652     758 .. 0.99
   3 ?   -0.6   0.1      0.89   1.6e+03      50      72 ..     881     904 ..     867     925 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.5
     Vps39_1  18 gpLlrleNaCdlkdveeiLkkekkykeLidlYygkklheeALeLlk 63 
                 +++l +  +  lk+  e+L + k++k+      +kk+ ++A++L++
  CCE27381.1 405 ISVLNMLEDALLKNKTETLREVKMLKAE--ALFRKKKFRQAMDLMN 448
                 5555555566666666777777776653..3346677788888876 PP

  == domain 2  score: 114.8 bits;  conditional E-value: 1.2e-36
     Vps39_1   1 iDTaLlkvYlktkpklvgpLlrleNaCdlkdveeiLkkekkykeLidlYygkklheeALeLlkeladedeedeedsslkgeketiiqylqklseedldl 99 
                 +DT+L+++Y++++p+l+g+L+r++N+Cd+++v+  L ++++y eL+d++ygk+lh++AL+Ll+++ + +e  ee  sl+g++++ iqylq+l ++++dl
  CCE27381.1 652 VDTTLFRAYMFSQPSLAGSLFRIPNFCDPDVVNDALLEHNRYTELVDFFYGKRLHRQALDLLYKFGSPTEPFEEARSLHGPDRV-IQYLQNLPPSEIDL 749
                 8******************************************************************9999***********99.************** PP

     Vps39_1 100 ileyskwvl 108
                 ile+++w+l
  CCE27381.1 750 ILEFADWTL 758
                 *******97 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.89
     Vps39_1  50 ygkklheeALeLlkelade.deed 72 
                  + ++h++ALe+ +  +++  + +
  CCE27381.1 881 SNMGQHKKALEIYVFKMQDyGKAE 904
                 56799******9875544333333 PP

>> Vps39_2  Vacuolar sorting protein 39 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   1.7e-29     3e-26       1     108 [.     962    1084 ..     962    1085 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 1.7e-29
     Vps39_2    1 lelLskhaerldplevLdllPdelplkdlesflekalrnslekkreeqvvkklrkaeklsveeell.........klrskkvvvteekvCavCkk.. 86  
                  l+lLskh++rl+++++L+l+Pd+lp+ +le ++++++r++++  +e+++v++lrkae+  v  +l          + r+++v +t+e++C vC+k  
  CCE27381.1  962 LDLLSKHGSRLPATSTLRLIPDDLPVGSLEAYFRGRIRSANSLVNESRIVAGLRKAEQIAVAARLNigdsvvdgqGGRNRHVTITDERHCFVCHKkl 1058
                  79**************************************************************99*****************************33 PP

     Vps39_2   87 ....rlgesvfvvyPngsvvHlgCak 108 
                      r+g sv++v+P++s vH+gC +
  CCE27381.1 1059 gggmRIGGSVIAVLPDNSAVHYGCLN 1084
                  333335689***************87 PP

>> CNH  CNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.5     8e+03      50      75 ..      45      70 ..      43      84 .. 0.71
   2 !   58.2   0.0   5.2e-19   9.3e-16      32     267 ..     103     352 ..      90     358 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.5
         CNH 50 llllsdkqLyvydlsaLeekeeesql 75
                l+ l    L+vy+l  L ++e+ +++
  CCE27381.1 45 LVGLNSGALRVYRLNELPADEQDESS 70
                66667789999999999999987733 PP

  == domain 2  score: 58.2 bits;  conditional E-value: 5.2e-19
         CNH  32 ieklss...vtqlaVleelnlllllsdkqLyvydlsaLeekeeesqlakkksenltqklpetkgchffa.....irngyske....kfLvvavkskivl 118
                  + ++s   + qla+++e n +++ls+ ++ ++dl++ e  e                l +tk+++ fa     ++++ ++      +L+vavk++++l
  CCE27381.1 103 EVEKFStraIDQLAIIKEANTIVSLSNYYVSLHDLQNYEHIE---------------TLGRTKNASCFAvtsniVKDPDTGIpeifSRLAVAVKRRLLL 186
                 444555588************************999999999...............7778888888887666655555544222269*********** PP

         CNH 119 lewneplkkfkkklrefqvpaevfsisvl.kpklcvgvakgFelvnldegaaeslldpednsldfaarkenlkplaviqis.................e 199
                   w e+  ++  +++e+ +++++ si++   +k++ g+++g+ +vn+ ++++ +++ p +     + + + + ++++  +                  +
  CCE27381.1 187 WNWHESELSH--EVTEVVLSDSIRSITWAnATKVICGMNSGYVVVNVLTQEVVDVVGPGAVG--ANGSGSRFGAVSAAGMGymglggytprplaaklsD 281
                 *****76666..*****************99*****************77777776666544..34445555555555555555555555555555548 PP

         CNH 200 defLlcydefavyvdlqGrrsrdseleWegkPesvaclepyllafhk...nfieirsvetgelvqeisgkk 267
                 +++Ll  d    +vd  G++ ++ ++ W ++Pes+ +++py+l+ ++     +e+r+ +t  l+q+is++ 
  CCE27381.1 282 GQILLARDINTLFVDDDGKPLEKRQIPWTSAPESIEYSYPYILILQPpakGLLEVRNPDTLSLIQSISLPG 352
                 9********************************************9855244***************9985 PP

>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.23   4.1e+02      10      45 ..     388     427 ..     384     462 .. 0.55
   2 ?   -1.5   0.0       1.1     2e+03      50     104 ..     658     711 ..     646     721 .. 0.62
   3 !   18.0   0.2   1.1e-06     0.002      28     122 ..     801     910 ..     773     916 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.23
                 CCCCHHHHHCTT-HHHHCHHHCCHH....HCHTS--HHHH CS
    Clathrin  10 lsrvvklfeeaglleelleyLekvl....kedskenpalq 45 
                 +++ v+++ + g+++e++++L ++     k++++  +++ 
  CCE27381.1 388 YDSQVEELIQSGNFDEAISVLNMLEdallKNKTETLREVK 427
                 5555666666677777777666554333333333444444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
                 HHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSS CS
    Clathrin  50 elyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykkinefkkais 104
                  +y  +++ + + + ++  n +d++ v + + +++ y e+v  +   + + +a++
  CCE27381.1 658 RAYMFSQP-SLAGSLFRIPNFCDPDVVNDALLEHNRYTELVDFFYGKRLHRQALD 711
                 55555554.4455555556667777777777777777776654444555555555 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 1.1e-06
                 HHHCCHHHCHTS--HHHHHHHHHHHHHT...........T-HHHHHHTTSS---.S-TTHHHHHHHT-S..SHHHHHHHHHTTXTHSSHSSX.SSSSHC CS
    Clathrin  28 eyLekvlkedskenpalqtallelyaky...........ddpqeleeflkknnn.ydlekvaklcekad..lyeeavilykkinefkkaisl.lkklkd 111
                  yLe ++ e + ++++++++l+ely+ +           +   + ++fl+ + + y l k++++ ++ +   ye   i++++++++kka+++ + k++d
  CCE27381.1 801 LYLEHIIGELDDMTREFHNRLVELYVGElkrmdggedrdEMMARFLTFLRDSRQvYSLTKALDMISNDEaaFYEAQAIILSNMGQHKKALEIyVFKMQD 899
                 399****888889**********************98876677888899988888**********655555*********************9999999 PP

                 SCHHHHTTTTT CS
    Clathrin 112 fddaieyaakv 122
                 + +a ey+ +v
  CCE27381.1 900 YGKAEEYCNRV 910
                 99999998876 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00052      0.93       1      49 [.     395     448 ..     395     462 .. 0.79
   2 ?    5.7   0.1     0.012        21      14      47 ..     858     892 ..     855     893 .. 0.93
   3 ?   -2.7   0.0         5     9e+03       3      17 ..     896     910 ..     895     916 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00052
      TPR_19   1 llaegdyaeA...lalleqalqedpk..naearllLAeallalgqldeAealLd 49 
                 l+++g+++eA   l++le al ++      e+++l Aeal+  + + +A++l++
  CCE27381.1 395 LIQSGNFDEAisvLNMLEDALLKNKTetLREVKMLKAEALFRKKKFRQAMDLMN 448
                 678899999988888888888777776677888888999999999999988877 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.012
      TPR_19  14 leqalqedpknaearllL.AeallalgqldeAeal 47 
                 l++al+   ++++a +   A++l ++gq ++A ++
  CCE27381.1 858 LTKALDMISNDEAAFYEAqAIILSNMGQHKKALEI 892
                 789*************999*************987 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5
      TPR_19   3 aegdyaeAlalleqa 17 
                 +++dy  A ++  ++
  CCE27381.1 896 KMQDYGKAEEYCNRV 910
                 567777777766665 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00063       1.1      12      49 ..     412     450 ..     397     463 .. 0.74
   2 ?    2.6   0.1     0.087   1.6e+02      16      45 ..     862     892 ..     855     898 .. 0.74
   3 ?   -1.6   0.0       1.9   3.3e+03       3      21 ..     898     916 ..     896     923 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00063
                 HHHHH.HHH--HHH.HHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  12 aerllaaetesped.ayllAlclylngqykrAyellrka 49 
                  + ll+ +te +    +l+A++l++ +++ +A++l ++ 
  CCE27381.1 412 EDALLKNKTETLREvKMLKAEALFRKKKFRQAMDLMNED 450
                 4555566666666624667***************99987 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.087
                 H.HHH--HHHHHHHHHH..HHHTT-HHHHHHH CS
      ANAPC3  16 laaetespedayllAlc..lylngqykrAyel 45 
                 l  +  ++e+a++ A++  l ++gq+k+A+e+
  CCE27381.1 862 L-DMISNDEAAFYEAQAiiLSNMGQHKKALEI 892
                 5.55568889999766522677899****998 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.9
                 T-HHHHHHHHHHHH.HHH- CS
      ANAPC3   3 nnyknAiflaerllaaete 21 
                 ++y +A+ +++r+++a+  
  CCE27381.1 898 QDYGKAEEYCNRVHKAQDT 916
                 6788999999999976544 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.18   3.3e+02      11      23 ..     395     407 ..     393     409 .. 0.83
   2 ?    1.5   0.1      0.24   4.2e+02       6      25 ..     429     448 ..     425     449 .. 0.84
   3 ?    3.6   0.1     0.049        88       2      24 ..     871     893 ..     870     894 .. 0.89
   4 ?    3.9   0.1      0.04        72      12      29 ..     895     912 ..     895     916 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.18
       TPR_2  11 yyklgdyeeAlea 23 
                 ++++g+++eA+  
  CCE27381.1 395 LIQSGNFDEAISV 407
                 6799******975 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.24
       TPR_2   6 nlGlayyklgdyeeAleafe 25 
                   ++a+++++++ +A ++++
  CCE27381.1 429 LKAEALFRKKKFRQAMDLMN 448
                 6799***********98876 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.049
       TPR_2   2 ealynlGlayyklgdyeeAleaf 24 
                   + +++ ++ ++g++++Ale +
  CCE27381.1 871 AFYEAQAIILSNMGQHKKALEIY 893
                 678899**************976 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.04
       TPR_2  12 yklgdyeeAleafekAle 29 
                 +k++dy +A+e+++++ +
  CCE27381.1 895 FKMQDYGKAEEYCNRVHK 912
                 6899**********9876 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.58     1e+03      13      21 ..     397     405 ..     394     409 .. 0.85
   2 ?    0.6   0.0      0.32   5.8e+02       7      22 ..     430     445 ..     425     446 .. 0.87
   3 ?    4.2   0.1     0.024        42       8      24 ..     877     893 ..     870     894 .. 0.86
   4 ?    7.5   0.3    0.0022       3.9      12      28 ..     895     911 ..     895     914 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.58
                 HTT-HHHHH CS
       TPR_1  13 klgkydeAl 21 
                 + g++deA+
  CCE27381.1 397 QSGNFDEAI 405
                 78******9 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.32
                 HHHHHHHTT-HHHHHH CS
       TPR_1   7 lGnayfklgkydeAle 22 
                 ++ a+f+++k+ +A +
  CCE27381.1 430 KAEALFRKKKFRQAMD 445
                 799***********86 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.024
                 HHHHHHTT-HHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyy 24 
                 + ++ ++g++++Ale y
  CCE27381.1 877 AIILSNMGQHKKALEIY 893
                 7899**********966 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0022
                 HHTT-HHHHHHHHHHHH CS
       TPR_1  12 fklgkydeAleyyekAL 28 
                 fk+++y +A+ey++++ 
  CCE27381.1 895 FKMQDYGKAEEYCNRVH 911
                 79************985 PP

>> Cnd1_N  non-SMC mitotic condensation complex subunit 1, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00015      0.28       8      71 ..     855     919 ..     851     942 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
      Cnd1_N   8 ldlllsglsallesvesdlessd.eadsvashknaLemygfllqwlvealekessskssaasasa 71 
                 +++l+++l   +++ ++  e++  + +++ +hk+aLe+y+f +q   +a+e  +   ++++++ +
  CCE27381.1 855 VYSLTKALDMISNDEAAFYEAQAiILSNMGQHKKALEIYVFKMQDYGKAEEYCNRVHKAQDTTLS 919
                 678888888888888888885337899******************99999954444444433333 PP

>> Mad3_BUB1_I  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00024      0.43      71     120 ..     843     893 ..     840     895 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
                  HHHHTTSS-HHHHHHHHHH.HTTSTTBHHHHHHHHHHHHHTT-HHHHHHHH CS
  Mad3_BUB1_I  71 lkyadlveepreifkflas.kkiGtklalfYeewAellekkgrfkeAeevy 120
                   ++  +++++r++++   +   i +  a+fYe+ A +l ++g+ k+A e+y
   CCE27381.1 843 ARFLTFLRDSRQVYSLTKAlDMISNDEAAFYEAQAIILSNMGQHKKALEIY 893
                  566777888999998887625688899***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1094 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.43
# Mc/sec: 7654.16
//
Query:       CCE27382.1  [L=1068]
Description: uncharacterized protein CPUR_00856 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-40  138.3   0.1    6.3e-27   95.5   0.0    2.4  3  SPX            SPX domain
    7.1e-33  114.4  36.4    9.9e-33  113.9  36.4    1.2  1  Na_sulph_symp  Sodium:sulfate symporter transmembrane region
    9.2e-33  113.7  57.1      2e-28   99.5  36.9    1.9  2  CitMHS         Citrate transporter
  ------ inclusion threshold ------
          9    5.6  16.4        1.3    8.4   5.8    2.8  3  DUF373         Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       1.8     8e+03      68      98 ..     141     171 ..      90     226 .. 0.46
   2 !   41.8   0.1     3e-14   1.3e-10       1      44 [.     234     277 ..     234     291 .. 0.79
   3 !   95.5   0.0   1.4e-30   6.3e-27     181     382 ..     283     482 ..     270     483 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.8
         SPX  68 tsaaadesgnsaadasssepkdeaeslprrs 98 
                 +s+  d+s+ + a   ss+++ +  s+ +r+
  CCE27382.1 141 SSHIGDPSSVAGAGITSSNTDHSSISTGHRE 171
                 3333333333333222222222211222222 PP

  == domain 2  score: 41.8 bits;  conditional E-value: 3e-14
         SPX   1 MKFakeLeenlvpEWrdaYldYkqLKKlIkkvqreleslgleae 44 
                 MKF+++ ++n+vp W ++Y+ Y+ LKKlI++ +++ ++   +  
  CCE27382.1 234 MKFSHSVQFNAVPDWSSHYIAYSNLKKLIYQFEKAAHQAHAGDP 277
                 **********************************6663333333 PP

  == domain 3  score: 95.5 bits;  conditional E-value: 1.4e-30
         SPX 181 r....aekeFferLdseLnkvetFykakeeefterlesLrkqleal.rprrikeaeerksdlyrwreifglksveaqvfessreldrgelseeardkev 274
                      + ++F + L  eL+k+++Fy ake e++e++++L +++ +  +   + + + +      ++++++ + + + +f++    d  e s  a+d++ 
  CCE27382.1 283 FssedPTEAFTRALGVELEKISSFYVAKEGELLEEVNQLVRDVGERpILDGTDLRRMS------SGDAHRVR-LRSTSFSGPGTDDDMEDS--ASDDDE 372
                 333448899************************************4333333322222......33366666.888888888888887644..444444 PP

         SPX 275 seelekngwikptksklekkr.neralekvkpektlkafldsvrrdylrk..enrvklkkakkklkkafvelYrgLelLKsYqeLNrtAFrKIlKKfDK 370
                   +l+k+++    ++ ++  +  +++l+ + ++ t +a ++s  +d+  +       l ++  +lkk+++ lY++L++LKsY+ LN+t+F+K+lKKfDK
  CCE27382.1 373 TTGLNKSRSFGALRRPATGVGqHVSDLAAE-SDVTRSARRHSTCDDFGEQsvMFSSTLLSSGIMLKKRIISLYVQLCELKSYAQLNKTGFSKVLKKFDK 470
                 444444444444433332222445555444.45566666667777777777777899999999************************************ PP

         SPX 371 vtaltaskrymk 382
                 +++  ++  ymk
  CCE27382.1 471 ILGKSLKGPYMK 482
                 ***********8 PP

>> Na_sulph_symp  Sodium:sulfate symporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9  36.4   2.2e-36   9.9e-33       5     466 ..     605    1060 ..     601    1065 .. 0.84

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 2.2e-36
  Na_sulph_symp    5 aklllllvvlliilllPapdgleskawrllaifiaaivglileplplavialialsllavligvla...........akalsevlsgfssdttl 87  
                     + ll  + v++ +ll+P  d  +++++ +la ++++ + + +e +pl v++l+   l++vl  v             ++a++++ +   s +++
     CCE27382.1  605 LTLLGCISVFCALLLVPIMD--KPEEQNCLALLVFVSMLWATETIPLFVTSLLVPFLSVVLRVVCDedglkhkrlgaKEATNAIFAAMWSPVIM 696 
                     56667778888888887766..788999************************99999888777766899*******999999999********* PP

  Na_sulph_symp   88 LvfaalliaaavektgLgkRiAlvlvkivGkrtliLgyalvladl..llapatpsntAraggivfpvikslssafgsepekqserkigaylmlt 179 
                     L+++++++aaa+ k  ++kR+A +++++ G++++++  a++++    ++ +++ ++        + +i+ +  ++ s+ +       ++ +++ 
     CCE27382.1  697 LLLGGFTLAAALSKCKIDKRLATLILSKAGTQPRTVLMATMFVAAfaSMLISNVAAPVLC----YSIIEPMLRTLPSDSDM------SKAVIIG 780 
                     *********************************999888887765004444444444444....55666666666566555......3568899 PP

  Na_sulph_symp  180 vvqsasitsiaflTamApNllllglinsilgveitwasWflaaiptgvillllvplllyvlyppeikkkeeakavaktelkelGpltarekall 273 
                     ++ ++ i+++    a  +N++++g+++       tw++Wf ++ip+g +++ll++ ll v ++p    + +  +  k++      ++  +++++
     CCE27382.1  781 IALASNIGGMLSPIASPQNVVAMGIMKP----APTWLQWFFIVIPVGAVSILLIWVLLLVTFQPGKGTVIAPIRPLKER------FSGVQWSVA 864 
                     999************************5....579***********************999999888775555555554......5678***** PP

  Na_sulph_symp  274 ilfvlllllWifgesln...idattvaivvlvillllrvldWkDivkqktaWntllllgglialakllersgliewlgnklttslsglspavai 364 
                     i+ v  + lW  +++++    d +++ai+ +v+ + + +l+ +D   ++ +W +++l +g+++l k    sgl++ l++ ++++++g+s   ++
     CCE27382.1  865 IITVATIGLWCASHQMEhifGDMGVIAIIPIVLFFGIGILTKEDF--NNFPWTIIILAAGGLSLGKAVRSSGLLHELAEIVSKNVQGMSL-YVV 955 
                     **************998876699********************75..789************************************7765.566 PP

  Na_sulph_symp  365 iiilslfvlvhylfaSatAttaallpillavaqaipg.appllvalllalatslagfllpyatgpnpivf......gagylkvkdywrlGfils 451 
                     ++++s+++lv   f S t    ++lp++  v++++ + + p l+++  +l  s a + lp ++ pn+ +       g  yl+vk++ + G++ s
     CCE27382.1  956 LVVFSALILVIATFISHTVAALIFLPLVFDVGTSMDQpH-PNLLVMGGVLMCSAA-MGLPTSGFPNMTAImkedatGQRYLQVKHFISRGIPSS 1047
                     7889999****************************8744.555566666666666.67777777777543223333999*************** PP

  Na_sulph_symp  452 iigllillllgalww 466 
                     i++l+++++lg  ++
     CCE27382.1 1048 ILTLIVVITLG--YG 1060
                     ********999..55 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5  36.9   4.5e-32     2e-28       2     297 ..     640    1000 ..     639    1001 .. 0.79
   2 !   29.4  12.3   9.5e-11   4.2e-07      13     142 ..     889    1038 ..     886    1066 .. 0.52

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 4.5e-32
                  xxxxxxxxxxxxxxxxxxxxx...............xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
      CitMHS    2 vllileklrldvvallvlvll...............vltiee....alsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvll 78  
                  +l+++e ++l v++llv  l                 l+ +e    +++++ sp+i+lllg+++++aal+++ + +rla+ +l++ag++++ +l+++
  CCE27382.1  640 MLWATETIPLFVTSLLVPFLSvvlrvvcdedglkhkRLGAKEatnaIFAAMWSPVIMLLLGGFTLAAALSKCKIDKRLATLILSKAGTQPRtVLMAT 736 
                  799************9999989898777766666654444448888999999********************************************* PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS   79 vlltallsafvsndgvvlimipivlslakrlkklppl...lliplalaaniggaltpiGtpttraa......arpglslpnllllalllvgllplvl 166 
                  ++++a+ s+++sn+++ +++ +i+ ++ + l  ++ +   ++i +ala+nigg+l+pi  p  ++a      a+ +l ++++++++ ++ +ll+ vl
  CCE27382.1  737 MFVAAFASMLISNVAAPVLCYSIIEPMLRTLPSDSDMskaVIIGIALASNIGGMLSPIASPQNVVAmgimkpAPTWLQWFFIVIPVGAVSILLIWVL 833 
                  ****************66666666666666666655566699*******************777779999999999999999998887776655555 PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxx.......................................xxxxxxxxx RF
      CitMHS  167 lfmfgvalalpvnapkvkkqkaiieaiarsllpv........atillla.......................................ykkveWsvl 216 
                  l+        +   p + +  a i+ +++++  v        +     a                                       +++ +W ++
  CCE27382.1  834 LL--------VTFQPGKGTVIAPIRPLKERFSGVqwsvaiitV-----AtiglwcashqmehifgdmgviaiipivlffgigiltkedFNNFPWTII 917 
                  54........122222222222222222222222333222222.....24455578888888888888888889999999***************** PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx...x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  217 llfaGvfllvgaleqtGilealadllga...g.gplvalalvlgliallsafisnvavaalmapialgmapalgllspsplalal 297 
                  +l+aG + l++a++ +G+l+ la+++++   g  ++v+l+++ +li ++  fis + +a++++p+++ +  ++   +p+p +l++
  CCE27382.1  918 ILAAGGLSLGKAVRSSGLLHELAEIVSKnvqGmSLYVVLVVFSALILVIATFISHTVAALIFLPLVFDVGTSMD--QPHPNLLVM 1000
                  **************************5569846888888899999999********************988644..677777765 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 9.5e-11
                  xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx...xxxxxxxxxxxxxxxx RF
      CitMHS   13 vvallvlvll....vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvllvlltall...safvsndgvvlimipi 101 
                  v+a++++vl+    +lt e+ ++ + ++ii+l +g+  +g+a+ ++Gl + la+ + + + g  + l v+lv+++al+   + f+s ++++li++p+
  CCE27382.1  889 VIAIIPIVLFfgigILTKED-FNNFPWTIIILAAGGLSLGKAVRSSGLLHELAEIVSKNVQG--MsLYVVLVVFSALIlviATFISHTVAALIFLPL 982 
                  66666666667664444444.77777777777777777777777777777777777777766..445555555555441113444444447777777 PP

                  xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx..............x RF
      CitMHS  102 vlslakrlkklppl....lliplalaaniggaltpiGtpttraa..............a 142 
                  v++++ +  +++p     ++  + ++++++g+ t  G p   a+               
  CCE27382.1  983 VFDVGTS--MDQPHpnllVMGGVLMCSAAMGLPT-SGFPNMTAImkedatgqrylqvkH 1038
                  7777764..4444444543344555555555333.344422222445555555544441 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.7     0.013        57     228     320 ..     603     722 ..     585     748 .. 0.63
   2 ?    1.6   1.4     0.034   1.5e+02     178     264 ..     689     783 ..     675     869 .. 0.59
   3 ?    8.4   5.8   0.00029       1.3     159     242 ..     892     975 ..     879    1062 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.013
      DUF373 228 llllligiisgyislesvss.asvssglltlilafiyg.....avewlalailtaslgkiideylkre.....ekdiarllllpflvlaiglvlygasa 315
                  +l+l+g is + +l  v   ++ +++   ++l+f++      ++++++ ++l+ +l+ ++  + +++     +   +++ +++f +++  +++  + +
  CCE27382.1 603 SMLTLLGCISVFCALLLVPImDKPEEQNCLALLVFVSMlwateTIPLFVTSLLVPFLSVVLRVVCDEDglkhkRLGAKEATNAIFAAMWSPVIMLLLGG 701
                 455666666666664443333222233333344444433334499999999999999999999997767765444456667888888888888888888 PP

      DUF373 316 ylls................l 320
                 ++l+                l
  CCE27382.1 702 FTLAaalskckidkrlatliL 722
                 887666666666555444440 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.034
      DUF373 178 elalaiillllGlylllrGfg...ldelleelleklkesleegritfvtyv.vallllligiisgyislesvss.....asvssglltlilafiyg 264
                 ++   +i+lllG++ l  +++   +d++l++l+ + k  ++  ++ + t++ +a++++li+ +++ + + s+ +      +++s + +++++ i+ 
  CCE27382.1 689 AMWSPVIMLLLGGFTLAAALSkckIDKRLATLILS-KAGTQPRTVLMATMFvAAFASMLISNVAAPVLCYSIIEpmlrtLPSDSDMSKAVIIGIAL 783
                 46667899999999998887522266666655543.344444444444444144445666666554333333222222434444444444444444 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00029
      DUF373 159 vplGlllliyalllllglpelalaiillllGlylllrGfgldelleelleklkesleegritfvtyvvallllligiisgyisl 242
                 +++ +l++ +++l+  ++ ++ ++ii+l+ G++ l ++++   ll+el+e +++ ++  ++ +v +v ++l+l+i+++ + + +
  CCE27382.1 892 IIPIVLFFGIGILTKEDFNNFPWTIIILAAGGLSLGKAVRSSGLLHELAEIVSKNVQGMSLYVVLVVFSALILVIATFISHTVA 975
                 33444455556666689999****************************************************999999886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1058  (0.0590105); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 6978.48
//
Query:       CCE27383.1  [L=438]
Description: uncharacterized protein CPUR_00857 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-19   70.5   0.0    6.3e-19   68.3   0.0    1.8  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    5.4e-12   46.1   2.2    4.1e-11   43.3   0.4    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00031   19.9   0.0    0.00055   19.1   0.0    1.4  1  Lycopene_cycl   Lycopene cyclase protein
    0.00038   19.7   0.1     0.0006   19.1   0.1    1.2  1  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
     0.0056   16.0   0.2      0.027   13.7   0.1    1.9  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.02   13.5   0.1      0.028   13.0   0.1    1.1  1  Glyco_hydro_48  Glycosyl hydrolase family 48
      0.028   14.0   0.3       0.29   10.7   0.1    2.6  3  DAO             FAD dependent oxidoreductase
      0.034   14.6   0.2       0.95    9.9   0.1    2.5  2  NAD_binding_7   Putative NAD(P)-binding
        0.1   12.8   0.0       0.66   10.2   0.0    2.5  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
       0.13   11.0   0.2       0.22   10.4   0.2    1.3  1  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   3.5e-22   6.3e-19       2     289 ..      22     347 ..      21     352 .. 0.77

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 3.5e-22
                  SEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.............................HHHHCHHHHCC CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvaedaeias.............................evvkklnqgie 68 
                  +v+v Gg  AGl++  +l     g+   + e +++ ++    l ++   v ++++ +                                      +++
   CCE27383.1  22 RVLVAGGSYAGLSTVVNLLDlgRGLTPRMSE-KKYKHHPELGLVNWDITVVDKRDGFYhligsplaladteyakktwikfqdlpglaT------PQVK 112
                  5777788888888888888766577777774.33334444444333333333333333445567777777777777777776654431......4699 PP

                  CCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  69 lllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgk 166
                  +l+g ++ ++d + ++ +l +  ++  ++  yd+ v AtG +   + +p   +  ++l+++ ++  a+++++    +vvvGgG++G+E+Aa+l+ ++ 
   CCE27383.1 113 FLHG-SISNVDCATRTATLVDCATKIATTHSYDYFVAATGLHRAWPVVPQSLTRKQYLLEAEEHIHAVSHAQHG--VVVVGGGAVGIEMAAELKMVKP 207
                  9999.9999998888888866666888999*******************9989999998888888888888888..****************988855 PP

                  ..EEEEEESSSSSS..TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE..........EEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT- CS
                  ..xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 167 ..evtlveardrll..raldkelsaaleealekeGvevklgtsvkeidgnge..........klevvledgeeidadlvvvavGvrpstelleeklgl 250
                    +vtlv+ rdrll  +al +e+++ + e l++ +vev lg++  + ++ +           +++   ++g+++ a+ v++av  + st++       
   CCE27383.1 208 hlRVTLVHSRDRLLssEALSEECKEKALELLREADVEVLLGHRLLATTKMSGsgidgdvvsaEYQIDFTNGKSMRASAVIMAVSNSVSTAGD-YLPSS 304
                  337*****************************************98888888888998875555599999999**********999999886.66667 PP

                  EEEETTEEE--TTS.....BESSTTEEE-GGGCTECCSS--HHH CS
                  xxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 251 elderggivvdefl.....rtnvpgiyaiGDvaggkggpelaqa 289
                  +lde g++ + ++        n ++ + +GD + + +g++++  
   CCE27383.1 305 ALDEEGYVHIRSNTmfapgTPNAEQHFCAGDLT-KWSGIKRCGW 347
                  779999998888775665334788999999988.6666666555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.21   3.7e+02       1      22 [.      22      43 ..      22      48 .. 0.87
   2 !   43.3   0.4   2.3e-14   4.1e-11       2      69 ..     186     257 ..     185     266 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.21
                EEEEECSSHHHHHHHHHHHHTT CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg 22
                +v+v Gg+y gl    +l +lg
  CCE27383.1 22 RVLVAGGSYAGLSTVVNLLDLG 43
                79**********9998888887 PP

  == domain 2  score: 43.3 bits;  conditional E-value: 2.3e-14
                 EEEECSSHHHHHHHHHHHHTT..SEEEEEESSSSSS..TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelg..kkVtvversdkll..rllDeeaskilqeklekngievllntkveeiegs 69 
                 vvvvGgG +g+E+A++l+  +   +Vt+v+ +d+ll   +l ee+ +   e l++  +evll++++ + ++ 
  CCE27383.1 186 VVVVGGGAVGIEMAAELKMVKphLRVTLVHSRDRLLssEALSEECKEKALELLREADVEVLLGHRLLATTKM 257
                 8****************9888768****************************************99887755 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     3e-07   0.00055       2      54 ..     186     238 ..     185     250 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3e-07
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsllfpnnyvWsdefedlgal 54 
                    vvv+G+G+ g+ +Aa+l   kp l+v+l+ + + ll +   + ++ +++l+ l
     CCE27383.1 186 VVVVGGGAVGIEMAAELKMVKPHLRVTLVHSRDRLLSSEALSEECKEKALELL 238
                    8****************************888888776666888888888744 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   3.3e-07    0.0006     145     232 ..     139     224 ..     113     233 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.3e-07
  K_oxygenase 145 eelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrsealepld 232
                  ++++    v ++G +++ P v ++l+ k+ ++ ++e  +    ++a++ ++VvG+G  + e++ +l   +++  ++lv ++++l  ++
   CCE27383.1 139 TTHSYDYFVAATGLHRAWPVVPQSLTRKQYLLEAEEHIHAV--SHAQHGVVVVGGGAVGIEMAAELKMVKPHLRVTLVHSRDRLLSSE 224
                  55555667889*************99888888888888877..7999*********************************99987765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.28   5.1e+02     234     270 ..     120     155 ..      89     167 .. 0.74
   2 !   13.7   0.1   1.5e-05     0.027     155     264 ..     178     289 ..     144     320 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.28
  Pyr_redox_3 234 evkeikekeeeykvktedgkkvevkddvvlatGykpd 270
                  +v+  +++ + ++  t+   +++++d +v+atG +  
   CCE27383.1 120 NVDCATRTATLVDCATKI-ATTHSYDYFVAATGLHRA 155
                  455556666666666666.46688999******9875 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.5e-05
  Pyr_redox_3 155 kvkefhkyagqkvvViGgknSavDaAlel..vrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvke....ekikvlfnaevkeik..ekeee 244
                   v      a++ vvV+Gg+  ++++A el  v+   +Vt+v++++ + ++e   s + k    + l+e+  e    +++ + ++ +   i+    + e
   CCE27383.1 178 AV----SHAQHGVVVVGGGAVGIEMAAELkmVKPHLRVTLVHSRDRLLSSE-ALSEECKEKALELLREADVEvllgHRLLATTKMSGSGIDgdVVSAE 270
                  33....334778999999999999997653377789999999998777764.6666667666666666665566654444444444445542245667 PP

  Pyr_redox_3 245 ykvktedgkkvevkddvvla 264
                  y++ +++gk++++ + v++a
   CCE27383.1 271 YQIDFTNGKSMRA-SAVIMA 289
                  7777888777665.455555 PP

>> Glyco_hydro_48  Glycosyl hydrolase family 48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.6e-05     0.028     221     324 ..     263     368 ..     255     378 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
                     HHHHHHHHHHHHHHHHHTT-.HHHCHHHHHHHHHHHHHGGGGGB-T.T-EETTCCTTSEE--GGGGB--S-BS--EEEEESST--EEEE--SEEE CS
  Glyco_hydro_48 221 daravqaaywakkwakeqGk.ekevsslvakaakmGdylryalfdk.yfkkiGsasskaagtgkdsahyllsWyyaWGGaldasWawrigsshah 313
                     d  +v a y+ +    ++ + ++ + ++ +  +  Gdyl  +  d   + +i s++  a+gt +  +h+     + W G    +Wa + g  +ah
      CCE27383.1 263 DGDVVSAEYQIDFTNGKSMRaSAVIMAVSNSVSTAGDYLPSSALDEeGYVHIRSNTMFAPGTPNAEQHFCAGDLTKWSGIKRCGWAMHTGHYAAH 357
                     55667777776654444333044556666677999****999888636999999999************************************** PP

                     GGG--HHHHHH CS
  Glyco_hydro_48 314 fgyqnplaaya 324
                       +q +l  y 
      CCE27383.1 358 NIHQLVLHRYT 368
                     ****9988775 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.54   9.7e+02       2      30 ..      23      75 ..      22      79 .. 0.63
   2 ?   -0.9   0.0      0.54   9.7e+02     185     225 ..     134     169 ..     106     182 .. 0.59
   3 ?   10.7   0.1   0.00016      0.29       2      31 ..     186     219 ..     185     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.54
                EEEECTSHHHHHHHHHH.............HHTT.............EEEEESSS CS
         DAO  2 vviiGGGiiGlstAyeL.............arrg.............Vtllekgd 30
                v++ GG ++Glst   L                +             +t+++k+d
  CCE27383.1 23 VLVAGGSYAGLSTVVNLldlgrgltprmseK--KykhhpelglvnwdITVVDKRD 75
                8999999999999999955544444444320..1333345557777777777775 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.54
                 ECT.EEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEE CS
         DAO 185 ttp.gendaadavVnaaGawsdllgllkeldlpispvrgqvl 225
                 +t+  +++++d+ V a+G++ + +   + +  p s +r q+l
  CCE27383.1 134 ATKiATTHSYDYFVAATGLH-RAW---PVV--PQSLTRKQYL 169
                 344344567899******98.233...333..4455565555 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00016
                 EEEECTSHHHHHHHHHHH.HTT...EEEEESSSS CS
         DAO   2 vviiGGGiiGlstAyeLa.rrg...Vtllekgdi 31 
                 vv++GGG +G+  A eL   ++   Vtl+ ++d+
  CCE27383.1 186 VVVVGGGAVGIEMAAELKmVKPhlrVTLVHSRDR 219
                 8****************42234789**9998865 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.14   2.5e+02       9      35 ..      22      48 ..      20     142 .. 0.75
   2 ?    9.9   0.1   0.00053      0.95       7      46 ..     183     233 ..     164     297 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.14
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtv 35
                   +vlv+Gg   +++ v +ll+ g  +t 
     CCE27383.1 22 RVLVAGGSYAGLSTVVNLLDLGRGLTP 48
                   79*************999998876654 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00053
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleag..akvtvvapev........keele.e 46 
                    +  v+vvGgG v+ + +  l   +   +vt+v  +         +ee++ +
     CCE27383.1 183 QHGVVVVGGGAVGIEMAAELKMVKphLRVTLVHSRDrllssealSEECKeK 233
                    5669************99887766337788876664333322232222232 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.8     5e+03      20      30 ..      66      76 ..      55      77 .. 0.82
   2 ?   10.2   0.0   0.00037      0.66       1      31 [.     188     220 ..     188     245 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.8
                   EEEEEE-SSSS CS
  NAD_binding_8 20 fdvlllekrdr 30
                    d+++++krd+
     CCE27383.1 66 WDITVVDKRDG 76
                   589*****986 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00037
                    EE--SHHHHHHHHHHHC..CTEEEEEE-SSSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLak..agfdvlllekrdrl 31 
                    +vG+G+ G  +A++L+    +++v+l+ +rdrl
     CCE27383.1 188 VVGGGAVGIEMAAELKMvkPHLRVTLVHSRDRL 220
                    8**************9631599*****999994 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00012      0.22       2      34 ..     186     217 ..     185     220 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
                     EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgklevtlvese 34 
                     +v+vGGG  G   Aa l+++  + l+vtlv s 
      CCE27383.1 186 VVVVGGGAVGIEMAAELKMVKPH-LRVTLVHSR 217
                     8******************9954.******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3193.29
//
Query:       CCE27384.1  [L=604]
Description: related to major facilitator MirA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-19   67.5  50.6    3.5e-17   62.3  47.7    2.5  2  MFS_1     Major Facilitator Superfamily
    7.9e-07   27.9  21.8    2.2e-06   26.4  21.8    1.6  1  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3  47.7     4e-21   3.5e-17       1     352 [.      90     508 ..      90     509 .. 0.86
   2 ?   -2.4   0.0      0.19   1.7e+03     150     171 ..     567     588 ..     526     599 .. 0.69

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 4e-21
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 +++++f  +l+ +++g + p ++++++  ++s   ++  +  ++ +v+ l l+ + d fGr   +ll+++l+ lgl++++++ ++ + +++ v+  +g 
  CCE27384.1  90 IWVIYFADSLQQATTGNLTP-YVTSAFK-QHSLTPTVSITSNIVGGVFKLTLAKVLDVFGRPQGYLLSIILTTLGLVMMAVCRNVETYAAAQVFYWVGF 186
                 58899999999999999999.*******.99999999999***********************************555555588889************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllll...peepperkrkspkeee...... 188
                  +l     +++ad ++ ++rg+++++ ++ + + + ++ +l+  +++  g+r+ f i+a+++  + + l ++l+   ++++++r+  sp++        
  CCE27384.1 187 NGLGYCLSIFVADTSSLQNRGLMLAFTTSPYIITTWIAGPLAQGFLEGPGFRWGFGIFALLTPCVTLpL-YVLFmknYRKAKQRGLISPRKTAltfwqt 284
                 99*********************************888888888889******************9954.55554777777777777777777****** PP

       MFS_1 189 .........................................kgtgpaplvp..............awkallkdpvlw............illialllff 220
                                                                                  +w+ + ++ +++            ++ +a+++ f
  CCE27384.1 285 lvhyarefdviglvlvsvglalfllpfnihtrqvdgwrsplI--------IsslvmgplllcafaIWETFYAPVQFLpyalltdrtvvgACALAAVS-F 374
                 **************************9999998644444330........24566666777889989999999988344455676666444444444.4 PP

       MFS_1 221 fgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..ssavllllvlvl.iGfglgf 316
                 +gf+   +++ ++lq v gls + +a+++ ++++++++++a+++g l++++gr ++l l +++ ++++  + + ++   + ++ + +++ + i +++g 
  CCE27384.1 375 IGFYVWNSYFRSFLQVVNGLS-VAQASYVGSIYSIGSCFSAIFVGLLIRKTGRYKALSLYFGVPATVFGVWSMRSALqpEAQIGYTVMCQVlIACAGGA 472
                 69999****************.**********************************9999999999999999999997766666666554448889999 PP

       MFS_1 317 vfpsllalasdlappeeagtasglfntagslggalg 352
                  +++ +++a+  a+ ++ + ++++ ++++++g+a+g
  CCE27384.1 473 LVITQQTAAMAAASHQYLAVVLAVDSLFSAIGAAIG 508
                 9*********************************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.19
       MFS_1 150 Wravfyilaivsllafvlflll 171
                  ra+  + ++v+ll+fv ++l+
  CCE27384.1 567 QRAMLAVSTAVLLLSFVAVGLW 588
                 4555556666666666655554 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4  21.8   2.5e-10   2.2e-06      61     482 ..     101     533 ..      58     538 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.5e-10
       TRI12  61 qasasal.pnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpag.asplfvge 157
                 qa++  l p +     q   +  +s    +   v  l + ++ d fgr    +l+ il  +g ++ + + +++t  aa  +  v     g +  +fv +
  CCE27384.1 101 QATTGNLtPYVTSAFKQHSLTPTVSITSNIVGGVFKLTLAKVLDVFGRPQGYLLSIILTTLGLVMMAVCRNVETYAAAQVFYWVGFNGLGyCLSIFVAD 199
                 333333324444444444444444444445556778999*********9999*****************************9998766652679***** PP

       TRI12 158 lmsnktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyii.tsaiavllivvwyyppsfaqlhgkkvrkreela..........kldwigii 245
                   s + + l l   + p ++t+ ++  l q +     +rw f i+ + t ++++ l v++      a+  g    ++  l+            d ig++
  CCE27384.1 200 TSSLQNRGLMLAFTTSPYIITTWIAGPLAQGFLEGPGFRWGFGIFALlTPCVTLPLYVLFMKNYRKAKQRGLISPRKTALTfwqtlvhyarEFDVIGLV 298
                 ********************99999999999988889*******97615567777777776666555555544433333321111112222589***** PP

       TRI12 246 lvivgvslfllgvswggkpnspwnsakviglissglgslvvfalyevygkpvrpivppalfkd.trgfvcillissimgamnlslviiypqqvvnifgs 343
                 lv+vg +lfll      +  + w s  +i  +  g   l  fa++e +  pv+ ++p al+ d t    c l   s +g            qvvn +  
  CCE27384.1 299 LVSVGLALFLLPFNIHTRQVDGWRSPLIISSLVMGPLLLCAFAIWETFYAPVQ-FLPYALLTDrTVVGACALAAVSFIGFYVWNSYFRSFLQVVNGLS- 395
                 ****************************************************9.57999988824455799999999998777766666677777443. PP

       TRI12 344 slknweetawmsatasfgtgagvvvlgslfhlvrhirwqilvgalwlta.flgamssvnrdnknaaialsvlsgfvvawaqditmllvqfittdedlgv 441
                  +    +++++ +  s+g+    + +g l+      r++ l   + + a ++g  s     + +a i  +v++ +++a a    ++  q  +       
  CCE27384.1 396 -V---AQASYVGSIYSIGSCFSAIFVGLLIRKTG--RYKALSLYFGVPAtVFGVWSMRSALQPEAQIGYTVMCQVLIACAGGALVITQQTAAMAAASHQ 488
                 .3...34566777777777777777776544332..444443333333312344444445556677777777777777777666666666665555556 PP

       TRI12 442 afavvaaarpfagsiftaafis....lysnrypkelashlssalr 482
                  +avv a   ++ +i +a  ++    ++   +p++l  +l  + r
  CCE27384.1 489 YLAVVLAVDSLFSAIGAAIGLTvsatIWQAVFPQKLKEYLPESAR 533
                 666666666666666555433300114455566666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4103.89
//
Query:       CCE27385.1  [L=254]
Description: related to aerobactin siderophore biosynthesis protein iucB [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-22   79.0   2.8    2.8e-20   72.5   2.8    2.3  1  Acetyltransf_8  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   2.8   1.5e-24   2.8e-20       3     122 ..     137     244 ..     135     248 .. 0.90

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 1.5e-24
                     GGGHHHHHHHCTSCCCHHHH-----HHHHHHHHHHHC.STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHHHCT.TTC CS
  Acetyltransf_8   3 eaDlellhrWmnrprvaewweeagtleevrellakldadphsepliglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeaearg.kgl 96 
                     +++l l+h+W+n+pr ++ we +gtl ++re+l+++++d h+ ++++       + + +Y          y+a ++drG H l+g+ ++rg +++
      CCE27385.1 137 DEHLRLFHEWQNDPRFSQGWERTGTLVQHREYLRNVEQDAHQVAILAKRT----AWAYTY----------YNAGDFDRGRHSLVGDVRFRGpHHR 217
                     789*****************************************999763....333333..........9999****************95578 PP

                     HHHHHHHHHHHHHC.CTT--EEEE--B CS
  Acetyltransf_8  97 ttallralvhylfa.dprtrrvvvEPd 122
                     + a++++l+hylf+ dprt+  v+EP+
      CCE27385.1 218 VMAWWSSLMHYLFLdDPRTMDAVGEPK 244
                     *************6488*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2000.57
//
Query:       CCE27386.1  [L=592]
Description: related to long-chain-fatty-acid-CoA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-98  328.9   0.0    4.4e-98  328.6   0.0    1.1  1  AMP-binding      AMP-binding enzyme
    8.2e-13   49.1   0.0    1.9e-12   47.9   0.0    1.7  1  AMP-binding_C    AMP-binding enzyme C-terminal domain
     0.0049   16.9   0.2      0.015   15.3   0.2    1.8  1  Malate_DH        Malate dehydrogenase enzyme
  ------ inclusion threshold ------
      0.056   13.8   0.0        0.1   12.9   0.0    1.4  1  AMP-binding_C_2  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.6   0.0  9.9e-102   4.4e-98       7     422 ..      50     470 ..      44     471 .. 0.86

  Alignments for each domain:
  == domain 1  score: 328.6 bits;  conditional E-value: 9.9e-102
                  HSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE....E CS
  AMP-binding   7 ktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli....a 100
                  ++  k +l+   +g ++TY+el+++++ lA++L+++G++ gdrV+i++ n+ ++ ++++a++++Gav+v ln+t+ta e  y l+ s++kv++     
   CCE27386.1  50 QHGTKECLIIPWTGARWTYSELNQQSSLLARALLEMGIRVGDRVGIMAGNCEQYAAVFFAVARIGAVLVILNNTYTATEAMYGLRFSNCKVFFttrkI 147
                  566666666555889******************************************************************************87651 PP

                  ..TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS......-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHH CS
  AMP-binding 101 ..tvdselleklleaaakleavklvivldadellkeeelkeeeeseekae......kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvas 190
                    +vd++    lle+ a++++  +v++l  ++ ++ e +  +e  +++++       ++  +++ p++++++++TSGTTG PK++ml+h nlv+n + 
   CCE27386.1 148 ghQVDNRP---LLEQLATEKKGPQVVLLRGEGTETGEYQTYDELIQASRKagndgvLQRAMRRVLPHQVVNLQFTSGTTGLPKAAMLTHHNLVNNSRF 242
                  45677777...55555555566677777777766665555555555444256778845567789*******************************666 PP

                  HHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCH.HHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHH.CHHHHCCGTT-S CS
  AMP-binding 191 lkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaald.pklllelieklkvtviagvPrvleallesgalk.aakkakdlsslr 286
                  +   +r +l++ddv+++  pl+h+fgl+l+ll+++++G+++v++ +   +d p   l++i+++++t ++gvP++++ l++++ +  +     ++ +lr
   CCE27386.1 243 I--GDRMRLSPDDVLCCPPPLFHCFGLVLGLLAIVTHGGKIVYPAEV--FDiPS-TLRAISDESCTAVHGVPAMFDSLFQAELPPgF-----NCERLR 330
                  5..7788899*********************************7744..56454.56*********************996555534.....7899** PP

                  EEEEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEE.CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-H CS
  AMP-binding 287 lvllggeplspellrffralfge.evlegYGlTEttgvvtv.lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkp 382
                  + +++g+p+++ l++ + ++fg  e+  +YGlTE+++ +++ ++++  +++l +vG+ +p++ +kivD e g+ vp ge Gel++ g ++  gY+++ 
   CCE27386.1 331 TGIIAGAPVPRYLMELLVNRFGMtEFTSSYGLTEASPTCFNaFTDDAMHRRLTTVGTLMPHANAKIVDRE-GNVVPVGERGELCMAGYQLQAGYWNNS 427
                  ***********************99**************66656666667999****************9.*************************** PP

                  HHHHHHEEE.T.CC.EEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 383 eataeafds.e.gr.wlrTGDlgrldedGyleivgRkkdlikl 422
                  e+t+e+++    g  wl+TGD +++de Gy  i+gR kd+i++
   CCE27386.1 428 EKTNEVMVRdAaGVlWLHTGDEAVFDEHGYCTITGRFKDIIIR 470
                  *******96535668**************************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   4.3e-16   1.9e-12       1      76 []     479     567 ..     479     567 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 4.3e-16
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEE...E---.---....HHHHHHHHHHHHT-TTTS-SEEEE-S-......--B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVv...lkdg.sea....leeeLkahvrkelgpyavpkkvvfvde......lpktrsGK 76 
                    e+E+ l++h  ++ a VvG +d+  Ge+++afV    ++++ + +    ++e+L+++vr++lg++++p +v  + e      +p+t sGK
     CCE27386.1 479 EIEERLMAHSSISRAIVVGLKDKHYGEVVAAFVEhtnPSQQtQ-PqpkpTDEDLRDWVRSALGKHKAPVYVFWLGEgdvpahVPLTGSGK 567
                    8********************************9543332232.24567**********************9875557888899999998 PP

>> Malate_DH  Malate dehydrogenase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   3.3e-06     0.015       2      21 ..     520     539 ..     519     542 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.3e-06
   Malate_DH   2 TsPQpaaskedlKeqqraaL 21 
                 T+PQp +++edl++  r aL
  CCE27386.1 520 TQPQPKPTDEDLRDWVRSAL 539
                 9*************999998 PP

>> AMP-binding_C_2  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.3e-05       0.1       1      69 [.     472     540 ..     472     559 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.3e-05
                      TEEE-HHHHHHHHHT-TTEEEEEEEEEEEETTEEEEEEEEEE-TT----HHHHHHHHHHHHHHHHHHHS CS
  AMP-binding_C_2   1 GvnvfPsqieevlkeieevepeYqivvtregelDelevkvEvkegfsdelkelealekkiakklksklg 69 
                      G n++P +iee l++ + ++    + +++++  ++++  vE+++   ++  + + +++++++ ++s+lg
       CCE27386.1 472 GENIYPLEIEERLMAHSSISRAIVVGLKDKHYGEVVAAFVEHTNPSQQTQPQPKPTDEDLRDWVRSALG 540
                      78******************************************8877766666666766666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4543.07
//
Query:       CCE27387.1  [L=533]
Description: related to atrophin-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-55  187.4   0.1    6.5e-55  186.3   0.1    1.6  1  DUF4050   Protein of unknown function (DUF4050)


Domain annotation for each model (and alignments):
>> DUF4050  Protein of unknown function (DUF4050)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.3   0.1   3.6e-59   6.5e-55       1     183 []     245     452 ..     245     452 .. 0.82

  Alignments for each domain:
  == domain 1  score: 186.3 bits;  conditional E-value: 3.6e-59
     DUF4050   1 spfrfdspdsvssavtsnqslderkrkrrraleeemkwNeGlalWearRdaWtgartvrkkekkerep............seaesasseesssss.... 83 
                 spfr+d  ++ +s+v  ++ ++++k++rrra++ee++wN+Gla++earRdaWtga+tvr +++++ +p            +     +s +ss++     
  CCE27387.1 245 SPFRLDMMSAAQSTV--QEIMEAKKARRRRAVREEISWNDGLACFEARRDAWTGAKTVRLHRRPVATPpasprsprrffsR-----RSISSSPPGpasp 336
                 799***999999999..78889***************************************99999998888766443331.....3333333336667 PP

     DUF4050  84 ............ealeeqsaessssssasatattspas....seeseeeesvetlvPvappllppsnpirasItpasYpsiYsklvvqsktpsvpInLs 166
                             +a++ +s++ s+ s+++ t+++++as    ++++ + ++ve+++P+ +p+lppsnp+rasI+p++Y+s+Y+k+++++++p++p+nLs
  CCE27387.1 337 slatnpghvdntTAISVASSSPSKGSTKDLTKHANDASsavsESSHGQVYPVEIMLPIGQPILPPSNPLRASISPTVYLSLYDKVILHNLQPACPVNLS 435
                 7888887876664455555555555555444444444478878888999************************************************** PP

     DUF4050 167 dmikalVqgWkadgeWp 183
                 dm++++V+gWk+dgeWp
  CCE27387.1 436 DMLRSCVAGWKRDGEWP 452
                 ****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3876.37
//
Query:       CCE27388.1  [L=558]
Description: uncharacterized protein CPUR_00862 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4354.13
//
Query:       CCE27389.1  [L=406]
Description: uncharacterized protein CPUR_00863 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-29  100.6   7.6    6.1e-29  100.6   7.6    4.1  5  PAPA-1    PAPA-1-like conserved region


Domain annotation for each model (and alignments):
>> PAPA-1  PAPA-1-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.72   1.3e+04      51      68 ..      53      71 ..      38      83 .. 0.53
   2 ?   -2.8   0.0      0.64   1.1e+04      54      54 ..     101     101 ..      66     141 .. 0.57
   3 ?   -0.8   2.3      0.16   2.8e+03      45      53 ..     145     153 ..     123     175 .. 0.53
   4 ?   -5.8  10.5         1   1.8e+04      48      58 ..     209     219 ..     183     240 .. 0.51
   5 !  100.6   7.6   3.4e-33   6.1e-29       1      85 [.     295     377 ..     295     378 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.72
                XXXXXXXXXXXXXX--S.- CS
      PAPA-1 51 eaeeeeeeaeeaerpap.l 68
                ++++++e++++ + ++p  
  CCE27389.1 53 DDDDDDEDDQDVHVAKPkR 71
                3333444444444444433 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.64
                 X CS
      PAPA-1  54 e 54 
                 +
  CCE27389.1 101 D 101
                 1 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.16
                 .XXXXXXXX CS
      PAPA-1  45 kakaaaeae 53 
                 ++++++e+e
  CCE27389.1 145 EEDEEEEEE 153
                 111111111 PP

  == domain 4  score: -5.8 bits;  conditional E-value: 1
                 XXXXXXXXXXX CS
      PAPA-1  48 aaaeaeeeeee 58 
                 +++e+eee+ee
  CCE27389.1 209 DEDEDEEEDEE 219
                 11111111111 PP

  == domain 5  score: 100.6 bits;  conditional E-value: 3.4e-33
                 XXXXHHHHHHHHHHHHHHHHHHHHHHXHHHHHHXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX--S-EEEEE-SS-EEEE--GG CS
      PAPA-1   1 EqalrraEmarrRknqsekrleeekaeTInkLLkkqagkkkkkkkakaaaeaeeeeeeaeeaerpapliRwvsnkdGsvlavpee 85 
                 E+++rr+EmarrR+n+sekr+ee k+eTInkLLkkqa+k ++k++a+aaa+a++++ee +  ++++ ++Rw++nk+Gs+++vp +
  CCE27389.1 295 ELSMRRQEMARRRRNLSEKRTEEVKMETINKLLKKQAPKINRKAAAAAAARADSPDEEGN--KTNSTMVRWINNKNGSRVSVPGD 377
                 889****************************************77777777777777444..44445****************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2306  (0.128618); expected 358.6 (0.02)
Passed bias filter:                      755  (0.0421105); expected 358.6 (0.02)
Passed Vit filter:                       243  (0.0135535); expected 17.9 (0.001)
Passed Fwd filter:                       135  (0.0075297); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.10u 0.40s 00:00:02.50 Elapsed: 00:00:00.64
# Mc/sec: 1908.37
//
Query:       CCE27390.1  [L=354]
Description: uncharacterized protein CPUR_00864 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-38  132.5   0.7    2.1e-38  132.5   0.7    1.9  2  Pex14_N   Peroxisomal membrane anchor protein (Pex14p) conser
  ------ inclusion threshold ------
      0.069   13.5   0.7       0.78   10.1   0.0    2.6  3  Ctf8      Ctf8


Domain annotation for each model (and alignments):
>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.7   2.3e-42   2.1e-38       3     157 .]      24     165 ..      23     165 .. 0.78
   2 ?   -1.1   0.6       0.3   2.7e+03      73      76 ..     207     210 ..     167     265 .. 0.54

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 2.3e-42
     Pex14_N   3 dlveqAvkFLqdpsVrsaplekkvaFLesKGLtqeEIeeaLkraereeeasesavaassaseqaqeesasssatpqpqaasqtsqsspspsppaqqqqq 101
                 d++e A++FLq+++V+ ++++kk +FL+sKGL++ +Ie++L+++    e      ++++a++ +qee++s s t++p+a++++++  p+++p++q++  
  CCE27390.1  24 DQIEVARRFLQEAHVKASSRAKKTEFLQSKGLRDSDIEKLLEEEV---E------HSTGAASPQQEEKTSGSDTTHPSASANQQH--PQEQPHHQASLV 111
                 78*****************************************22...2......222333333445555555555665544433..333333333333 PP

     Pex14_N 102 qyrpPivtypefltkppkppppPlrtwrdllitatalaglgaglyglskryiaPmi 157
                 + rpPivtypefl++p +  ppPl+t  ++l +++++agl+++lyg+sk++iaPm+
  CCE27390.1 112 HDRPPIVTYPEFLVRPDR--PPPLVTKDGILSALYGFAGLSTLLYGTSKFLIAPMV 165
                 449***********9999..***********************************6 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.3
     Pex14_N  73 ssat 76 
                 ss++
  CCE27390.1 207 SSQH 210
                 1111 PP

>> Ctf8  Ctf8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.4      0.71   6.4e+03     101     117 ..      86     102 ..      70     112 .. 0.42
   2 ?   10.1   0.0   8.7e-05      0.78      61     118 ..     166     222 ..     156     240 .. 0.79
   3 ?    0.6   0.0     0.071   6.3e+02      77     103 ..     267     289 ..     262     328 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.71
        Ctf8 101 eeeeeeeekeeekssee 117
                 +++++ + ++++++ +e
  CCE27390.1  86 SDTTHPSASANQQHPQE 102
                 22222222222222233 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 8.7e-05
        Ctf8  61 dtkwmkrvyLyvgkhQrLtGevkkLakplavlrrrksekkeeeeeeeekeeeksseee 118
                 +t+   r  Ly ++ Q+L   v +L+k + v+  ++ ++ +++++++  e +++ +e+
  CCE27390.1 166 ETTTDARSQLYHATAQKLDSLVAQLEKTVSVIPSTAATRPSSSQHDDAPEGSSD-DED 222
                 56778899**************************98888887777655444433.333 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.071
        Ctf8  77 rLtGevkkLakplavlrrrksekkeee 103
                 rLtG    L k lavlr + ++++e  
  CCE27390.1 267 RLTG----LTKSLAVLRDQLRAQSEGF 289
                 5555....8899999999977766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2667.50
//
Query:       CCE27391.1  [L=155]
Description: uncharacterized protein CPUR_00865 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.13   12.9   4.7       0.14   12.8   3.4    1.7  1  MgtE_N           MgtE intracellular N domain


Domain annotation for each model (and alignments):
>> MgtE_N  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.4   7.7e-06      0.14      27      93 ..      84     150 ..      59     154 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.7e-06
                 HHHHHHHHCTS-CCCCCHHHHCS-HHHHHHHHCCS-HHHHHHHHCCCHHHHHHHHHHCS-HHHHHHH CS
      MgtE_N  27 keeaaevleeldedlqeeliealsdeelaelleeldsDdaadlleelpeekveellsaldeeereei 93 
                  e  aev+ e++ ++  e+i+++  e + e+++e  ++ +a+++ e+ +e++++ +++ +    ee+
  CCE27391.1  84 VEVIAEVIAEVRAEVIVEVIAEVIAEVIVEVIAEVIVEVIAEVIAEVRAEVKAAEIPSVPDSPTEEV 150
                 6788999999999999999999999999999999999999999999999998887777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1132.61
//
Query:       CCE27392.1  [L=1098]
Description: uncharacterized protein CPUR_00866 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-07   29.4   0.2    1.3e-06   28.2   0.2    1.7  1  Chromo    Chromo (CHRromatin Organisation MOdifier) domain
  ------ inclusion threshold ------
        7.8    6.7   7.8       0.27   11.3   1.1    2.2  2  TAD2      Transactivation domain 2


Domain annotation for each model (and alignments):
>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.2   1.5e-10   1.3e-06       1      52 [.      27      73 ..      27      75 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.5e-10
                EEEEEEEEEEEETTEECEEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHH CS
      Chromo  1 yeVerIidhrtdkdgleleYlVKWkglpysentWEpeenlekcfqelideFk 52
                ++V +I+++ ++ + +  +Yl+ W+++   ++tWEp+enl+   qel+ e++
  CCE27392.1 27 WTVTKILAEAKVGGVQ--KYLIEWSDFRLCDATWEPAENLS---QELLAEWD 73
                689*************..**********************9...67888885 PP

>> TAD2  Transactivation domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.8         2   1.8e+04       3      13 ..     628     638 ..     626     638 .. 0.72
   2 ?   11.3   1.1     3e-05      0.27       3      20 ..    1044    1060 ..    1042    1062 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2
        TAD2   3 sqAmDDLmLsP 13 
                    + +LmL+P
  CCE27392.1 628 DPPISNLMLAP 638
                 555678***98 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3e-05
        TAD2    3 sqAmDDLmLsPDDiEqWF 20  
                  sq mD ++L PDD+++WF
  CCE27392.1 1044 SQKMD-IILDPDDLDKWF 1060
                  89995.99********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1098 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 7945.00
//
Query:       CCE27393.1  [L=212]
Description: probable GTP-binding protein Drab11 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-63  212.4   0.2    3.2e-63  212.2   0.2    1.1  1  Ras          Ras family
    2.7e-35  121.2   0.2    3.9e-35  120.7   0.2    1.2  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    4.6e-13   49.0   0.1      6e-13   48.6   0.1    1.1  1  Arf          ADP-ribosylation factor family
    7.8e-08   32.4   0.1    1.2e-07   31.8   0.1    1.3  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00034   20.2   0.1     0.0015   18.1   0.0    1.9  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00042   19.8   0.1    0.00063   19.2   0.1    1.3  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    0.00055   19.9   0.9      0.017   15.0   0.1    2.2  2  RsgA_GTPase  RsgA GTPase
     0.0029   17.9   0.0      0.019   15.3   0.0    2.0  1  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.015   14.8   0.0      0.025   14.0   0.0    1.4  1  SRPRB        Signal recognition particle receptor beta subuni
      0.017   15.1   0.1      0.046   13.7   0.1    1.8  1  AAA_14       AAA domain
      0.018   15.4   0.1       0.03   14.7   0.1    1.6  1  AAA_16       AAA ATPase domain
      0.022   15.3   0.1      0.039   14.5   0.1    1.4  1  ABC_tran     ABC transporter
       0.03   14.1   0.1      0.064   13.0   0.1    1.7  1  AAA_24       AAA domain
      0.033   13.6   0.0       0.17   11.3   0.0    1.9  2  TniB         Bacterial TniB protein
      0.094   12.5   0.6       0.14   11.9   0.5    1.5  1  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
      0.099   12.8   0.1        1.9    8.6   0.0    2.2  2  SpoIIID      Stage III sporulation protein D
        0.1   12.1   0.0       0.24   10.9   0.0    1.6  2  FeoB_N       Ferrous iron transport protein B
       0.12   11.9   0.0       0.21   11.1   0.0    1.4  1  AAA_7        P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.2   0.2   3.2e-66   3.2e-63       1     161 [.      11     171 ..      11     172 .. 0.99

  Alignments for each domain:
  == domain 1  score: 212.2 bits;  conditional E-value: 3.2e-66
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 K+vl+Gds+vGK++ll rf++++F+ +++sTigv+f t++i+vd+k++k +iwDTAGqe++++++++yyr+a g+llvydi++++++env++w++e+++
  CCE27393.1  11 KVVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQVDSKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHQTYENVTRWLKELRD 109
                 9************************************************************************************************** PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 +a+ n++i+LvGnK+Dl++ rav tee++++a+e++l f+etSA ++ nve af+++l+ei+
  CCE27393.1 110 HADANIVIMLVGNKSDLRHLRAVPTEEAKAFASENHLSFIETSALDASNVELAFQNILTEIY 171
                 **********************************************************9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.2   3.9e-38   3.9e-35       1     119 [.      11     125 ..      11     126 .. 0.90

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 3.9e-38
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 Kvvl+GdsgvGK+ ll+rf++++f+ ++kstigv+f+t+++ +++        k++k +iWDtaGqer+r++++ y+r+a  a+lvyd    +++en+ 
  CCE27393.1  11 KVVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSI-QVD-------SKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDiskHQTYENVT 101
                 9************************************9986.333.......36899*******************************76555679*** PP

                 HHHHHHHHHCSSS.-EEEEEE-TT CS
         Roc  97 eWlkelkkvagks.pvilvgnkiD 119
                 +Wlkel+++a+ + +++lvgnk D
  CCE27393.1 102 RWLKELRDHADANiVIMLVGNKSD 125
                 *********996626679****99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.1   6.1e-16     6e-13      15     146 ..      10     147 ..       4     170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 6.1e-16
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEE..EEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTigfnve..elei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                 ++++l+G  + GK+ +l +++ +e++   + Tig +    ++++  k++k ++wD  Gqe+ R + + Y++   + + v D ++++  e+  + Lk+l 
  CCE27393.1  10 FKVVLIGDSGVGKSNLLSRFTRNEFNLdSKSTIGVEFAtrSIQVdsKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHQTYENVTRWLKELR 108
                 699*********************98548899986544114443449**************************************************87 PP

                 TSGCCTTSEEEEEEE-TTSTT..SS-HHHHHHHTTGGGSS CS
         Arf 109 eeeelkevallvlaNKqDlpe..alseeelrellgleelk 146
                 ++ + +++++++++NK Dl++  a+ +ee ++  + ++l+
  CCE27393.1 109 DHAD-ANIVIMLVGNKSDLRHlrAVPTEEAKAFASENHLS 147
                 6665.66777788*****9852256666666555555444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   1.2e-10   1.2e-07       1     110 [.      11     117 ..      11     123 .. 0.65

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.2e-10
                 EEEEEESTTSSHHHHHHHHHTS.....TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.....kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpl 93 
                 +v+++G + vGKS L+++ t++        +    ++Tr i+    +    + +++Dt+G  e   + + ++ a+ +   a  +llv d+s +++++++
  CCE27393.1  11 KVVLIGDSGVGKSNLLSRFTRNefnldSKSTIGVEFATRSIQVDSKT---IKAQIWDTAG-QE---RYRAITSAYYR--GAVGALLVYDISkHQTYENV 100
                 699*****************974423122334455777777776544...678*******.54...34466777764..58899999999943356666 PP

                 HHHHHHHHHHTTSEEEE CS
    MMR_HSR1  94 deeleelleeakkplil 110
                  + l+el+++a+ ++++
  CCE27393.1 101 TRWLKELRDHADANIVI 117
                 66666665444444433 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.57   5.7e+02       5      25 ..      11      31 ..       9      42 .. 0.82
   2 !   18.1   0.0   1.5e-06    0.0015      53     184 ..      41     162 ..      21     176 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.57
                EEEEEESTTSSHHHHHHHHHH CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLly 25
                ++++ig+   GK+ L+ r + 
  CCE27393.1 11 KVVLIGDSGVGKSNLLSRFTR 31
                5889***********998775 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.5e-06
                 TSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB..STHHHHHHHHHHHHTTTE..EEEEEESCGSTHHHHHHHHHHHH CS
    GTP_EFTU  53 giTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG..vepqteevlrlalkegvp..iivfiNKmDrlkaelkeiveevk 147
                  i ++ a+ s++ ++k+ + ++ Dt G + +   +++ +r + ga+lv d+++    e+ t+ + +l    + +  i+++ NK D     l+ +++e  
  CCE27393.1  41 TIGVEFATRSIQVDSKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHqtYENVTRWLKELRDHADANivIMLVGNKSDLR--HLRAVPTEEA 137
                 455666666666679999********************************9966334455554444444444443266777****85..5667777777 PP

                 HHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHH CS
    GTP_EFTU 148 qklsrkeeklekygekgekevpvvfgSalkgegvktl 184
                 + +           +++ +  +++ +Sal++ +v+  
  CCE27393.1 138 KAF-----------ASE-NHLSFIETSALDASNVELA 162
                 677...........222.3577888888888866633 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   6.3e-07   0.00063       1     125 [.      11     128 ..      11     176 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 6.3e-07
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardt.lrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 kv+L+G sg GK+ + s    n    d   ++g+   ++  +v  ++ ++ ++wD  Gqe++ + +    +++    vg+l+ V D+++++   + e+ 
  CCE27393.1  11 KVVLIGDSGVGKSNLLSRFTRNEFNLDSkSTIGVEFATRSIQV-DSKTIKAQIWDTAGQERYRAIT----SAYYRGAVGALL-VYDISKHQ---TYENV 100
                 89****************9998887776145777777777777.57899***********998876....667777899987.99**9554...33444 PP

   Gtr1_RagA  99 keilealrqyspeakvfvli.hKmDliq 125
                 ++ l++lr++     v +l+ +K Dl +
  CCE27393.1 101 TRWLKELRDHADANIVIMLVgNKSDLRH 128
                 4455555554443333334336666643 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.7e-05     0.017     102     122 ..      12      32 ..       9      73 .. 0.77
   2 ?    3.6   0.0     0.055        55      33      91 ..      98     160 ..      84     176 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-05
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  +vl+G SGvGKS L+ +++ +
   CCE27393.1  12 VVLIGDSGVGKSNLLSRFTRN 32 
                  69*************998876 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.055
                  HHHHHHHHHH...HHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHH CS
  RsgA_GTPase  33 nlldrfLvla...eekgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkegle 91 
                  + ++r L ++    +++i +++v nK Dl + +   +ee k+  ++  ++++ +sa + +++e
   CCE27393.1  98 ENVTRWLKELrdhADANIVIMLVGNKSDLRHLRAvPTEEAKAFASENHLSFIETSALDASNVE 160
                  445555555411145677777777999999888755666666677777777777777666665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.9e-05     0.019       9     125 ..      13     117 ..      12     130 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.9e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst...sskdllrellralglelka...................erlsseellealeqa 85 
                 v++G sG+GK+ ll r++++       +  +++++ v+ +  +   +sk++  ++    g+e+ +                   +              
  CCE27393.1  13 VLIGDSGVGKSNLLSRFTRNEF-----NLDSKSTIGVEFATRSiqvDSKTIKAQIWDTAGQERYRaitsayyrgavgallvydiS-------------- 92 
                 89***************99863.....2356666666655555444555555555555553333322222222222244443332.............. PP

      AAA_22  86 lraravielliiDEaqhlrs.eealeeLrsllnlsrkgvql 125
                                 h  + e++ ++L++l + ++ ++ +
  CCE27393.1  93 ---------------KHQ-TyENVTRWLKELRDHADANIVI 117
                 ...............222.1233333333333333344444 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.5e-05     0.025       5     124 ..      11     126 ..       9     138 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.5e-05
                 EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHH CS
       SRPRB   5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAElly 100
                 +v+l+G s  GK  l+ r t ++++    S    ++a++    ++k  k ++ D  G+e+ r   + +    + + g + v D +   +  ++v  +l 
  CCE27393.1  11 KVVLIGDSGVGKSNLLSRFTRNEFNLDSKSTiGVEFATRSiqVDSKTIKAQIWDTAGQERYRAITSAY---YRGAVGALLVYDISKH-QTYENVTRWLK 105
                 589*******************99877777766666666545567888999********999754444...4444455556665533.34556666666 PP

                 HHHHHHHHHTT---EEEEEE-TTS CS
       SRPRB 101 eilliteklkdavdiliACnKqel 124
                 e+  +      ++ i++  nK++l
  CCE27393.1 106 ELRDHA---DANIVIMLVGNKSDL 126
                 644333...356667777777776 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.6e-05     0.046       5     102 ..      12     124 ..      11     152 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.6e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikell.vkkesilyinldderdkkladpe..........kllelileklke.ekktylflD..Eiqevpewekalkslvde 89 
                 +v+ G   vGK+ ll ++ ++++  +++s++ +++ + + +  +++           + +++i + +++     +l+ D    q ++++ ++lk+l d+
  CCE27393.1  12 VVLIGDSGVGKSNLLSRFTRNEFnLDSKSTIGVEFATRSIQVDSKTIkaqiwdtagqERYRAITSAYYRgAVGALLVYDisKHQTYENVTRWLKELRDH 110
                 57888899****************9***********988854442212223333343444555554323444555665533678889999999999998 PP

      AAA_14  90 g.knldvivtGSns 102
                    n+ +++ G +s
  CCE27393.1 111 AdANIVIMLVGNKS 124
                 75677777766544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1     3e-05      0.03      27      83 ..      12      72 ..      11     183 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3e-05
      AAA_16 27 vllsGesGvGKsslvrellr...alekd.....ggif.lrgkcdqlesaipysalaqalareellr 83
                v+l+G+sGvGKs l+ ++ r    l  d     g  + ++++  q +s++  +++++++ + e +r
  CCE27393.1 12 VVLIGDSGVGKSNLLSRFTRnefNL--DskstiG--VeFATRSIQVDSKTIKAQIWDTAGQ-ERYR 72
                789************9998743322..2334332..2233333333233222334444433.3334 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1     4e-05     0.039      13      42 ..      11      42 ..      10     123 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4e-05
                EEEEEESTTSSHHHHHHHHTTSS--..SEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkp..teGei 42
                kv+++G++G GKS Ll+ +++++ +   + +i
  CCE27393.1 11 KVVLIGDSGVGKSNLLSRFTRNEFNldSKSTI 42
                689***************99988665444555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   6.4e-05     0.064       4      41 ..      11      54 ..      10     121 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.4e-05
      AAA_24  4 kiliyGpsgiGKTtlakel......gpkplfidtekGlksldad 41
                k++++G+sg+GK+ l++++       ++   i +e  ++s+++d
  CCE27393.1 11 KVVLIGDSGVGKSNLLSRFtrnefnLDSKSTIGVEFATRSIQVD 54
                89*****************6665555555555555555555555 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017      0.17      38      63 ..      12      37 ..       8      71 .. 0.82
   2 ?   -0.3   0.0       0.6     6e+02     138     170 ..      96     130 ..      90     138 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
        TniB 38 lllvGdsnnGKtmivekFarlhppek 63
                ++l+Gds +GK+ ++++F+r++ + +
  CCE27393.1 12 VVLIGDSGVGKSNLLSRFTRNEFNLD 37
                689****************9986544 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.6
        TniB 138 kqreflnalksLgnel..kipivlvGteealralr 170
                 + ++++  lk L ++   +i i lvG ++ lr+lr
  CCE27393.1  96 TYENVTRWLKELRDHAdaNIVIMLVGNKSDLRHLR 130
                 45667777888877541156666888888777776 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00014      0.14       3      19 ..      13      29 ..      11     115 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
      AAA_21  3 vliGpNgsGKSnLLdal 19
                vliG+ g+GKSnLL  +
  CCE27393.1 13 VLIGDSGVGKSNLLSRF 29
                9*************866 PP

>> SpoIIID  Stage III sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.24   2.4e+02      27      52 ..      32      58 ..      20      74 .. 0.76
   2 ?    8.6   0.0    0.0019       1.9      28      70 ..      88     131 ..      80     141 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.24
     SpoIIID 27 kvfgv.skstvhkDvterLkkinkkla 52
                ++f++ skst+  + + r  ++++k  
  CCE27393.1 32 NEFNLdSKSTIGVEFATRSIQVDSKTI 58
                5565549******99999999997644 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0019
     SpoIIID  28 vfgvskstvhkDvterLkkinkklakqvkevLeknkae.RhiRG 70 
                 v+++sk   + +vt  Lk++  +  +++  +L  nk++ Rh+R 
  CCE27393.1  88 VYDISKHQTYENVTRWLKELRDHADANIVIMLVGNKSDlRHLRA 131
                 799********************************9866***96 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00024      0.24       2      56 ..      11      67 ..      10      77 .. 0.83
   2 ?   -2.0   0.0       2.3   2.3e+03     109     109 ..     118     118 ..      88     165 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00024
                EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEE..EEEE--- CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkev..eivDlPG 56
                +v+l+G+  vGk+ l+ + t  + +    + + ve ++ ++++++k++  +i D  G
  CCE27393.1 11 KVVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQVDSKTIkaQIWDTAG 67
                799**********************99999999999988888877554226777766 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.3
                 E CS
      FeoB_N 109 v 109
                 +
  CCE27393.1 118 M 118
                 2 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00021      0.21      35      72 ..      11      49 ..       9      73 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
       AAA_7 35 pvllvGptGtGKtviikd.llkkldkekylsltinfsaq 72
                +v+l+G++G+GK+ ++++ + ++++ ++ +++ ++f  +
  CCE27393.1 11 KVVLIGDSGVGKSNLLSRfTRNEFNLDSKSTIGVEFATR 49
                689***************666677777777777766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 1553.29
//
Query:       CCE27394.1  [L=312]
Description: uncharacterized protein CPUR_00868 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-39  135.6   0.0    2.8e-39  135.2   0.0    1.1  1  Brix      Brix domain


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   0.0   1.6e-43   2.8e-39       1     192 [.      35     237 ..      35     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 1.6e-43
                 BTT--HHHHHHHHHHHHHCTTSEEEEEE..ECT-TTTHHHHHHH...-HHHHHHHH.HCTC.SEEEEEE..SSTTEEEEEEEEECECTGGGSTTTSTS- CS
        Brix   1 grktssrlrqllkdlrslmkphtasflk..rnsnklkdlvelag...vthlellse.kndc.slfvfelskkrPngptlefkvenyslmkdlkkakkte 92 
                 +r++++r+r+ll+dl +++ ph  +  k   +s kl +l ela+     +++++   k+++ ++ ++++    Pngpt++++++n+++m++l+ +++++
  CCE27394.1  35 SRGVTYRHRHLLNDLAAML-PHGRKDVKfdSKS-KLNELNELAElynCNNVLFFEArKGKDlYIWLSKV----PNGPTIKMHLQNLHTMEELHFTGNCL 127
                 68899**************.*****99985444.77777777777767788888776444336666666....************************** PP

                 TT---EEEEES.....HHHHHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTTTECEEEEEEEEEE...............E..STTTTECT. CS
        Brix  93 fgsrPllvfng....kenfkllksllqdlFrvpkislkspklsglrrvvlftaaenqetdktisfRhYaikl...............kksgkklpnlek 172
                 +gsrP+l+f+     +++++l+k++++++F vp+ + ks k+ ++++v+ f++ +    + +i++R+Y+i+                kks+++      
  CCE27394.1 128 KGSRPILSFDAefdtQPHLRLIKEVFLHTFGVPQGARKS-KP-FIDHVMGFSIVD----G-KIWVRNYQISEeeaslvqsgdaeeggKKSKSSST---- 215
                 **********999999999****************9976.88.9********998....5.9********8566667777777666533333322.... PP

                 .T.....EEEEEEESEEEEEEEE CS
        Brix 173 ek...kerveLeEiGPrfdLklr 192
                  k   +++++L EiGPrf+L+++
  CCE27394.1 216 -KaaaNTEIKLIEIGPRFVLTPI 237
                 .123488*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2395.59
//
Query:       CCE27395.1  [L=420]
Description: uncharacterized protein CPUR_00869 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2875.82
//
Query:       CCE27396.1  [L=747]
Description: related to histone deacetylase A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.7e-100  334.8   0.1   3.7e-100  334.4   0.1    1.2  1  Arb2           Arb2 domain
    1.7e-82  277.3   0.0    2.4e-82  276.9   0.0    1.2  1  Hist_deacetyl  Histone deacetylase domain
  ------ inclusion threshold ------
       0.18   12.2   0.0       0.42   11.0   0.0    1.5  1  Peptidase_M61  M61 glycyl aminopeptidase


Domain annotation for each model (and alignments):
>> Arb2  Arb2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.4   0.1  6.1e-104  3.7e-100       1     257 [.     462     719 ..     462     721 .. 0.98

  Alignments for each domain:
  == domain 1  score: 334.4 bits;  conditional E-value: 6.1e-104
                 -HHHHHHHHHHHHHHHHH--EE---TTSSS----GGCEEE-TTGGG-SCEEEEEEE--EEE--C-TTCS-B-CCC-EEE-TCHHHHHHHHCTT-EEEEE CS
        Arb2   1 rlhdviReaqakkLaekyklvkLpilreklsksfenqvlatpnieeakkllvivHdppellaqpdpvtnklelhnsvlvdsvkkyidWavkqkygviDv 99 
                 rlhdviR+aq++ L ek+++++L+++r++l ksfenqvl+tp ++ +++llvi+Hdpp+llaq+d+v+  le+hn+++vd+v++yidWa++qk+gv+D+
  CCE27396.1 462 RLHDVIRNAQRQMLQEKHNMIPLYVQRDHLYKSFENQVLVTPLLHASRRLLVIIHDPPRLLAQSDAVDCVLEPHNAWVVDGVTQYIDWAISQKFGVMDI 560
                 8************************************************************************************************** PP

                 EE----........--SSSS-HHHHHHHHHHHHHHHHHTTTTSSS.SEEEEEEECCHHHHHHHHHHHS--TTTEEEEEEEECTS-------SSSTHHHH CS
        Arb2 100 nipkliteeeeee.skeeeeeesaasesqelllylwdnyielfesaekifllGvGdaysgvvkLlserdvrsrvkavinFvaekslravksevdeslsd 197
                 n+p ++t ee+++ + +  ++++ ++++q+l++ylwdn+++l+e +++ifl+GvG+ay+gv+ Ll++rd++s++++v+n+v++ +lr+vks++d +ls+
  CCE27396.1 561 NVPAYTTGEEDMDsYIPGYKDRALQDQIQQLACYLWDNFLQLYE-TDEIFLMGVGNAYLGVKALLINRDCKSKIAGVVNYVTG-NLRPVKSDIDPDLSA 657
                 ******99999888999***************************.6*************************************.9************** PP

                 HHHHTEEEEE-TT-CCGTT-...----G.GG--EEE-SSSSHHHHHHHCHHHHHHHHHCHT- CS
        Arb2 198 WYkknSlvfvskkhsvWkkees.kkvrk.ryGrvlrsdkeglnemleehleevtefildkle 257
                 WYk nS+vfv+++h++W++++  kkv+k r+G+v+rs+k +lnem++eh+++++e+il +++
  CCE27396.1 658 WYKGNSRVFVASDHACWSDRDLtKKVQKrRFGTVVRSPKLSLNEMMQEHADQAQEWILARTS 719
                 ********************999**9999****************************99875 PP

>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.9   0.0     4e-86   2.4e-82       1     306 [.      84     409 ..      84     410 .. 0.90

  Alignments for each domain:
  == domain 1  score: 276.9 bits;  conditional E-value: 4e-86
                    SCCGTHHHHHHHHHHHHT.THHHHCCE.................EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   1 hpenpkRlsaileslaesvglldelel................liqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiaskllddd 80 
                    hpe+p+R+  i ++ ++  gl+   ++                 i +++at+ee+  +Hs+e+l  +e+l+  + ++ +  +k++ ++      ++
     CCE27396.1  84 HPEDPRRIHEIFKAFKKV-GLVYTGSQaelpriikecptrymwRIPARPATREEICLAHSTEHLAWVERLETLSTAELRELTKQFDQG-----RES 173
                    89**************94.6555544456677888999999999*************************9988888875555555544.....467 PP

                    THCTTTCCHHHHHHHHHHHHHHHHHHTTSSSEEEETTSS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-..SS-EEEEE-SSS--HHHHHHCTT- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  81 tpvspktlkaallavgavleavdavlsgsvkaafvlvrPpgHHakaseasGFClvNnvaiaikylqakhe..lkrvailDvDvHhGnGteeafysd 174
                     +v + ++ aall++g++++++++v++g+vk+af+++rPpgHHa+++ ++GFC++Nnv +a+++ q+ +   +++v+ilD+DvHhGnG +++fy+d
     CCE27396.1 174 LYVGSMSYPAALLSAGGAIDTCKNVVTGQVKNAFAVIRPPGHHAESNGPMGFCFFNNVPVAVRVCQQDYPdtCRKVLILDWDVHHGNGIQNMFYDD 269
                    9****************************************************************996654589********************** PP

                    TTEEEEEEEE-.CCTSTTSS--TT---........SGGGTTSEEEEEE-T.T-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-B CS
                    xxxxxxxxxxx.xxxxxxxxxxxxxxx........xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 175 pdvltlSiHry.egifyPgtgaledlg........egkgkgfnlnvplee.gtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgeln 260
                    p+vl++SiH y +g+fyPg+   +++         +g+g g+n+n+ +++ g+gd eyl++f++i++p+++ef+Pdl+++saGfDa++gd+lg++ 
     CCE27396.1 270 PNVLYISIHVYqNGEFYPGKPPNSETPdggiencgAGAGVGKNINIGWHDqGMGDGEYLAAFQKIVMPIAKEFNPDLVVISAGFDAADGDELGGCF 365
                    ***********6699***88776666445676666888889*****998759******************************************** PP

                    B-HHHHHHHHHHHCCCHGS-G.EEEEE-S---HHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 261 lsvegykeltkklaeladkvkkvvllleGGYnlealaravtavlsa 306
                    +++  y+++t++l++lad  +kv ++leGGYnl+a+++++ av ++
     CCE27396.1 366 VTPPCYAHMTHMLMSLAD--GKVAVCLEGGYNLTAISNSAVAVART 409
                    *****************9..59*****************9999876 PP

>> Peptidase_M61  M61 glycyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.9e-05      0.42      36      61 ..     535     560 ..     528     606 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.9e-05
                    STHHHHTHHHHHHHHHHHHHTTSS-H CS
  Peptidase_M61  36 ellwvaEGlTsYygdlllarsglise 61 
                    ++ wv+ G+T+Y+++ ++ + g+++ 
     CCE27396.1 535 HNAWVVDGVTQYIDWAISQKFGVMDI 560
                    578*******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5432.52
//
Query:       CCE27397.1  [L=346]
Description: uncharacterized protein CPUR_00871 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.56   10.8   3.3        1.1    9.8   3.3    1.5  1  BEX       Brain expressed X-linked like family


Domain annotation for each model (and alignments):
>> BEX  Brain expressed X-linked like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.3   6.3e-05       1.1      92     116 ..     288     312 ..     277     322 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 6.3e-05
         BEX  92 addmervqeElrkvrqKlrefqwkq 116
                  d+ e++++E+r+ r++lr+f w+ 
  CCE27397.1 288 RDEEEKIRDEVRHRRERLRKFLWMW 312
                 58999******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2509.62
//
Query:       CCE27398.1  [L=768]
Description: uncharacterized protein CPUR_00872 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.43    8.7  17.0       0.65    8.1  17.0    1.2  1  Nop14        Nop14-like family


Domain annotation for each model (and alignments):
>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  17.0   3.6e-05      0.65     348     424 ..     631     706 ..     585     743 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 3.6e-05
       Nop14 348 eeededdfeedddlveseseeee.eeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeelleeekkaaee 424
                 +    ++ e ddd+ +s+ e ++ +e+++d +e+ d+ ++ + +ed+dd+ d+ s ++ + +e  ++ + ++++++ +
  CCE27398.1 631 NRPSYKEPETDDDEFDSGIEHDDvDEDDDDVDEDGDDVDD-DVDEDDDDERDQTS-DDRNRNESRHGRESSTTNDSPK 706
                 3333333334444444444444423333333333333333.22333333333222.2233333223322222221111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 5278.89
//
Query:       CCE27399.1  [L=708]
Description: uncharacterized protein CPUR_00873 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.4e-07   28.7   0.0    1.6e-06   27.9   0.0    1.3  1  VEFS-Box     VEFS-Box of polycomb protein
  ------ inclusion threshold ------
      0.019   14.6   0.1      0.042   13.5   0.1    1.5  1  zf_C2H2_ZHX  Zinc-fingers and homeoboxes C2H2 finger domain


Domain annotation for each model (and alignments):
>> VEFS-Box  VEFS-Box of polycomb protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.8e-10   1.6e-06      43     134 ..     542     634 ..     524     637 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.8e-10
    VEFS-Box  43 evDdealrlkerqmldeftDvnegekelmklWnlfvkkqrvvaDaqipwAceaFvklhgqelvkk.nLarnfllfliklldfglleaktinkc 134
                 + D ++l +++r+ + +f+Dv+  eke++  W+ fv +++v + a  p++  +F+k ++++l+   +  r +  ++  l   + l+ ++++++
  CCE27399.1 542 DADSDWLIHRHRESIKDFSDVTPAEKEYIWEWDGFVLRENVTSAAYFPQTWLKFIKAKATWLAGAeQRVRELAKHMSVLQARNALNDEHLQQA 634
                 6899**********************************************************9987888999999999998888888887775 PP

>> zf_C2H2_ZHX  Zinc-fingers and homeoboxes C2H2 finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   4.7e-06     0.042       5      30 ..     389     414 ..     387     423 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.7e-06
  zf_C2H2_ZHX   5 FvCveCsfsakkfegLalHNarsHpg 30 
                  + C+ C++  ++ ++L+lH   sHp+
   CCE27399.1 389 YRCITCGVYHESMDQLQLHLRTSHPA 414
                  88**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5216.38
//
Query:       CCE27400.1  [L=613]
Description: related to spliceosome associated protein 145 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-58  194.5   0.5    5.8e-58  194.5   0.5    2.3  2  DUF382          Domain of unknown function (DUF382)
    4.4e-18   64.9   3.8    1.1e-17   63.6   3.8    1.7  1  PSP             PSP
  ------ inclusion threshold ------
        1.8    7.3   7.4         38    2.9   0.0    2.6  2  SAPS            SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> DUF382  Domain of unknown function (DUF382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   1.1       1.8   1.1e+04      65      77 ..       9      21 ..       3      52 .. 0.60
   2 !  194.5   0.5   9.8e-62   5.8e-58       3     127 .]     167     291 ..     165     291 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.8
      DUF382 65 eelrealeekeee 77
                +++r+a ++++++
  CCE27400.1  9 NQMRRAKKKEQKK 21
                3444432222222 PP

  == domain 2  score: 194.5 bits;  conditional E-value: 9.8e-62
      DUF382   3 PevvevaDvdakdPvllvklKssknvvpvpshWsskreylsgkrglekkpfelPkfikeTgieelrealeekeeekslkekarekvqpklgkldidykk 101
                 Pevv+++Dv+++dP++lv++K+++nvvpvp hWs kreyls+krg+ek+ f+lP+fi++Tgi+e+r+a+ ek++e++lk+k+re+v pk+gkldidy+k
  CCE27400.1 167 PEVVDWHDVSSSDPRVLVQIKAQRNVVPVPPHWSLKREYLSSKRGVEKSAFRLPQFIADTGITEMRDAVLEKQAEQTLKQKQRERVAPKMGKLDIDYQK 265
                 9************************************************************************************************** PP

      DUF382 102 LhdaFfklqtkPkllkfGdlyyegke 127
                 L+daFf++qtkP+l++fG++yyegke
  CCE27400.1 266 LYDAFFRFQTKPELTRFGEVYYEGKE 291
                 ************************97 PP

>> PSP  PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   3.8   1.8e-21   1.1e-17       1      46 []     300     345 ..     300     345 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 1.8e-21
         PSP   1 kPGviSaeLReALglqegqlPpWiykMqrlGlPPgYpklkipGlna 46 
                 +PG++S++ +eALg++ g++PpW+++ qr G+PP+Yp lkipGlna
  CCE27400.1 300 RPGELSEATKEALGMPAGAPPPWLINQQRNGPPPSYPTLKIPGLNA 345
                 8*******************************************96 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   7.8     0.018   1.1e+02     258     348 ..      16      67 ..       2     166 .. 0.51
   2 ?    2.9   0.0    0.0064        38     272     326 ..     297     437 ..     223     610 .. 0.59

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.018
        SAPS 258 leeltseeealedvsdeaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdasseesa...laeeteeklrkkpvv 348
                 ++e+                                          ++++++++++ +++e++++d+d+ +++e+    ++e+t++k  ++ + 
  CCE27400.1  16 KKEQ------------------------------------------KKDKPAQAPNGHESEQQSQDQDQGQDQENSkteETETTDSKEDTQMTN 67 
                 1111..........................................111122222222222222211111111111001111112222222222 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.0064
        SAPS 272 s......................................................................................deaskeesaese 284
                 +                                                                                             +++++
  CCE27400.1 297 QhfrpgelseatkealgmpagapppwlinqqrngpppsyptlkipglnappppggswgfhpggwgkppvdetnrplyggdvfglaqnA------APAQT 389
                 0444555555555555666666666666666666666666666666666666666666666666666666666666666665544321......22222 PP

        SAPS 285 dltdkdedvsleesksakd......enkesdesesdtaeesseededd 326
                 + + + ++++++es + +        ++es+ +es++++e+++ed+d+
  CCE27400.1 390 QAQAQLQQLQINESVDRNLwgelqpRQEESEGEESEEEDEDEDEDADT 437
                 222222333333332222222221122222222222222333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1820  (0.101512); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                       139  (0.0077528); expected 17.9 (0.001)
Passed Fwd filter:                        56  (0.00312343); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.51
# Mc/sec: 3634.89
//
Query:       CCE27401.1  [L=551]
Description: related to SLY41 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-60  204.7  11.6    2.3e-60  204.4  11.6    1.1  1  TPT             Triose-phosphate Transporter family
    2.8e-10   40.5  26.7      6e-07   29.7   9.4    3.0  2  EamA            EamA-like transporter family
    4.6e-05   22.8  13.7    0.00019   20.8  13.7    1.8  1  UAA             UAA transporter family
  ------ inclusion threshold ------
      0.055   12.1   0.2       0.12   11.1   0.0    1.5  2  PSII            Photosystem II protein
       0.87   10.3   6.9       0.16   12.7   0.5    2.8  3  Multi_Drug_Res  Small Multidrug Resistance protein


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.4  11.6   6.3e-64   2.3e-60       2     289 ..     171     494 ..     170     495 .. 0.92

  Alignments for each domain:
  == domain 1  score: 204.4 bits;  conditional E-value: 6.3e-64
         TPT   2 klgllfllWYllnvvfnilnKkilnvfpyPltvsavql.lvgsvlilvlwalglkk...........rpkisse.flkailplalvktlghvlavvsls 87 
                 kl++l+l+WY+ + ++n   K iln+f  P+t++++q+ +v s++i+v+w + l               ++ s+  ++a lpla ++++gh+l+  + s
  CCE27401.1 171 KLVILCLMWYTSSALTNTSSKSILNAFDKPATLTLIQFaFVSSLCIFVAWLAALFPvlrhkvsalqhPIRLPSRrIITATLPLAAFQIFGHLLSSSATS 269
                 6899*********************************94477899999**99888778889998855334444469999******************** PP

         TPT  88 kvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvalasvtElsF..nligfisAlisnltfslrnifsKkllkk.lkd.......... 173
                 k++VS  ht+K + P+Ftv+  r+++  +++ + y sL+p+  Gv+la    +s+  ++ig i Al+++l+f+++ni+sKk++++  k           
  CCE27401.1 270 KIPVSLVHTIKGLSPLFTVLAYRIFYDIQYPRATYYSLIPLTSGVMLACSGKASYggQMIGVIQALLATLIFVSQNIVSKKIFNEaAKAesegpgiqsq 368
                 ******************************************************9777**************************985556899****** PP

         TPT 174 .ldalnlfaiitilslllllPvallvegvlktpsllkst.........kvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvl 262
                  ld+lnl+ + + ++++++lP+++  eg++   + l+ +         ++   +++++ + +gv+++++n++a+ +L++vspvt+sva+ +Krv+vIvl
  CCE27401.1 369 kLDKLNLLCYSSGMAFIMTLPIWFWSEGITLLKDFLHDGaldlsrkkdAMDHGRLTIEFIFNGVFHFAQNMLAFVLLSMVSPVTYSVASLIKRVFVIVL 467
                 ****************************77776666666677888753355899********************************************* PP

         TPT 263 svlvfknpvsllnaiGtavaivGvflY 289
                 ++l f+ p ++++a+G a++ +G ++Y
  CCE27401.1 468 AILWFRSPTTPVQAVGIALTFLGLYMY 494
                 *************************** PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   9.3   5.1e-06     0.018       4     134 ..     173     316 ..     170     318 .. 0.79
   2 !   29.7   9.4   1.7e-10     6e-07       1     134 [.     328     493 ..     328     494 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.1e-06
        EamA   4 illallaalfwaiyfvlskillrkv.spltltfvrfliagillliiallkegkl............aklslkd.wllllllgllgtvlafllffyalkk 88 
                 ++l+l    ++a++ + sk +l+ +  p tlt ++f + + l++++a+l +  +             +l+ +  + + l l+++ ++ ++ll  +a +k
  CCE27401.1 173 VILCLMWYTSSALTNTSSKSILNAFdKPATLTLIQFAFVSSLCIFVAWLAALFPvlrhkvsalqhpIRLPSRRiITATLPLAAFQIF-GHLLSSSATSK 270
                 788899999999******999999966889999999999999988866666665555545545556334444415555888877765.679******** PP

        EamA  89 tsasnaslitslePvftlilsvlllgekltlkqllgivlillGvll 134
                 +++s +  i  l+P+ft++   +++  +    ++ +++    Gv+l
  CCE27401.1 271 IPVSLVHTIKGLSPLFTVLAYRIFYDIQYPRATYYSLIPLTSGVML 316
                 *************************999999999999888888877 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 1.7e-10
        EamA   1 llgillallaalfwaiyfvlskillrkv...............spltltfvrfliagilllii..................allkegklaklslkdwll 66 
                 ++g++ alla+l++ +  ++sk+++++                + l l+ +++ +a+i+ l+i                  + l+++k + +++  + +
  CCE27401.1 328 MIGVIQALLATLIFVSQNIVSKKIFNEAakaesegpgiqsqklDKLNLLCYSSGMAFIMTLPIwfwsegitllkdflhdgaLDLSRKK-DAMDHGRLTI 425
                 589999******************9999999999999999999999*****************5555555555554444422222222.2444444555 PP

        EamA  67 llllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvll 134
                  +++  +  ++ ++l f +l+ +s+ + s+++++  vf+++l++l+++ + t  q +gi+l +lG+++
  CCE27401.1 426 EFIFNGVFHFAQNMLAFVLLSMVSPVTYSVASLIKRVFVIVLAILWFRSPTTPVQAVGIALTFLGLYM 493
                 56666666667779***************************************************997 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8  13.7   5.3e-08   0.00019      25     299 ..     195     495 ..     171     498 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.3e-08
         UAA  25 keepkafgnlltfvqflfvalegllesid.....i........lkkrkiPlktYvil....valffitsvlnnealkydisvPvhiifrssklipvmil 106
                 +   k+  ++lt++qf+fv+   ++ +       +        +++ + P ++ + +    +a+ +  + l+ +a +  i+v +   ++  + + + ++
  CCE27401.1 195 NAFDKP--ATLTLIQFAFVSSLCIFVAWLaalfpVlrhkvsalQHPIRLPSRRIITAtlplAAFQIFGHLLSSSATSK-IPVSLVHTIKGLSPLFTVLA 290
                 333333..89********986665555444665515566677766667777766554111156667778888888887.****99999*********** PP

         UAA 107 GililgkrYsllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvlallldavlglvqeklykkygkhske.............alfysh 192
                   +++  +Y    y s++ lt Gv+++   +a         s+  +++G++  +la+l+    ++v  k++++  k ++e              l ys 
  CCE27401.1 291 YRIFYDIQYPRATYYSLIPLTSGVMLACSGKA---------SYGGQMIGVIQALLATLIFVSQNIVSKKIFNEAAKAESEgpgiqsqkldklnLLCYSS 380
                 **************************998444.........4555677777777777777777777777777666554443333222222222788999 PP

         UAA 193 llslplfl..........llqgellsavkflsesedvallslpsklfylllnvltqyvcikgVlilisefgaltvtlvltlRKfvslllSillFknplt 281
                  ++++++l          ll++ l + + +ls+++d++     +  +  ++n +  ++     ++l s ++  t ++   + ++  ++l il+F+ p t
  CCE27401.1 381 GMAFIMTLpiwfwsegitLLKDFLHDGALDLSRKKDAM--DHGRLTIEFIFNGVFHFAQNMLAFVLLSMVSPVTYSVASLIKRVFVIVLAILWFRSPTT 477
                 99999999*96666666555555555555555555555..78999999*******99999999************************************ PP

         UAA 282 lqhlvgtllVflglllys 299
                   + vg +l flgl++y 
  CCE27401.1 478 PVQAVGIALTFLGLYMYD 495
                 ****************95 PP

>> PSII  Photosystem II protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.1   4.1e+03     256     273 ..     167     184 ..     160     185 .. 0.74
   2 ?   11.1   0.0   3.3e-05      0.12     213     284 ..     420     487 ..     412     516 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.1
        PSII 256 vllaafvvagtlWygnaa 273
                  +   +v+ + +Wy ++a
  CCE27401.1 167 PVSPKLVILCLMWYTSSA 184
                 555679999*****9875 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 3.3e-05
        PSII 213 HiavgilliigGifHivvrPlerlrralrignieavlssslaavllaafv.vagtlWygnaatPielfGPtry 284
                 H  + i  i+ G+fH +   l     a+ + ++ + +++s+a+++   fv v ++lW+ + +tP+   G + +
  CCE27401.1 420 HGRLTIEFIFNGVFHFAQNML-----AFVLLSMVSPVTYSVASLIKRVFViVLAILWFRSPTTPVQAVGIALT 487
                 666788999******987654.....444566667778899988887775167999*********98886655 PP

>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.46   1.7e+03      43      78 ..     261     295 ..     243     307 .. 0.70
   2 ?   -2.2   0.1       1.9   6.9e+03      65      88 ..     329     352 ..     323     355 .. 0.77
   3 ?   12.7   0.5   4.3e-05      0.16      32      92 ..     424     486 ..     408     487 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.46
                     HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH CS
  Multi_Drug_Res  43 fllLskalkslpvsvAYavwsGiGtvlivlvgillf 78 
                      ll s a++++pvs++ ++ +G+  +++vl+  +++
      CCE27401.1 261 HLLSSSATSKIPVSLVHTI-KGLSPLFTVLAYRIFY 295
                     4455678888999999876.6777777777766666 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.9
                     HHHHHHHHHHHHHH--------HH CS
  Multi_Drug_Res  65 iGtvlivlvgillfgeslslkkli 88 
                     iG++  +l+ +++  +++  kk++
      CCE27401.1 329 IGVIQALLATLIFVSQNIVSKKIF 352
                     688888888888888887777765 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 4.3e-05
                     --HHHH..HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH CS
  Multi_Drug_Res  32 sllviv..gygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkkliglal 92 
                     ++ +i+  ++ ++  +L++ l s+   v Y v s i  v++++++il+f ++    + +g+al
      CCE27401.1 424 TIEFIFngVFHFAQNMLAFVLLSMVSPVTYSVASLIKRVFVIVLAILWFRSPTTPVQAVGIAL 486
                     344444438899999*********************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3781.15
//
Query:       CCE27402.1  [L=534]
Description: related to origin recognition complex subunit 5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-83  279.7   0.0    3.8e-83  279.3   0.0    1.1  1  ORC5_C    Origin recognition complex (ORC) subunit 5 C-termin
    5.1e-18   66.0   0.3    9.9e-18   65.1   0.3    1.5  1  AAA_16    AAA ATPase domain
    0.00027   21.2   0.0    0.00052   20.3   0.0    1.4  1  AAA_22    AAA domain
     0.0093   15.4   0.0      0.018   14.5   0.0    1.4  1  TniB      Bacterial TniB protein
  ------ inclusion threshold ------
       0.11   12.8   0.0       0.22   11.8   0.0    1.5  1  AAA_28    AAA domain


Domain annotation for each model (and alignments):
>> ORC5_C  Origin recognition complex (ORC) subunit 5 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.3   0.0   1.1e-86   3.8e-83       1     285 []     217     532 ..     217     532 .. 0.87

  Alignments for each domain:
  == domain 1  score: 279.3 bits;  conditional E-value: 1.1e-86
      ORC5_C   1 ihFppytreevleils.kekpsngeeeeeeataklyerFvslvydslvkptardipelrsiceklWprFvaPildgelkpedfsrllaanralfrd... 95 
                 +hFppyt+ e+++il+ +++p+  +  ++++t++l++rF+++v+d++v+ +ar++p++++ c++lWprF+aP+l+g+++ ++f +ll+a r+ f+d   
  CCE27402.1 217 LHFPPYTKSEFVRILAlSPPPTPIARLTQQETHDLWTRFCAAVHDAFVRSAARTLPSFQHSCRALWPRFIAPVLAGTHSHKEFPKLLVAVRSRFQDesl 315
                 59**************756666899999999*****************************************************************999 PP

      ORC5_C  96 .......................qgesalaeelv...................ektaasssassasskssssklpeLpylaklLLiAAYLASynpprlD 152
                                                  +                    k+++ ++ +   s +++  ++ Lp++a+lLL+AAYLAS+n++++D
  CCE27402.1 316 lnpsiiavrpevpsadvsgtasiS---------TqsrtiakngsirggdtaplAKNSNITTPP---SFAAADLTTLLPIAARLLLLAAYLASHNATKHD 402
                 999999988888887776654331.........033345577789999877542222222222...3456677899*********************** PP

      ORC5_C 153 lrlFsktsgkskkrrkrrkgssqkskeka.kskkrkisqkllgPkaFpLeRllAIfqailpeeeaepseeess...etlsvdvlsqiatLvslrllvrt 247
                 l+lFs+++  + +r++rr+g+  +s + + +sk+rki++kllg++aF LeR++AIf+a++ e+++e  +   +    +l+ d+ +++atL+slrllvr+
  CCE27402.1 403 LTLFSTHH--H-GRKRRRGGGFVASGRGGpRSKHRKIARKLLGARAFVLERMMAIFEAVRGEWAPEGGSG--AigaGGLDGDLGMAVATLASLRLLVRV 496
                 ********..6.9999999999999888899********************************8854333..234449********************* PP

      ORC5_C 248 saaagdkldgsekwrvnVswevirelArsvgfeleeYL 285
                 +++  d +d+++kwr+nV+we ir+++rs+g+e+ee+L
  CCE27402.1 497 GSG--DVMDRAGKWRINVGWEAIRGIGRSIGVEVEEWL 532
                 *87..********************************9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.3   2.8e-21   9.9e-18       2     167 ..      20     194 ..      19     200 .. 0.72

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 2.8e-21
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql.esaipy..salaqalareellrqlldeaesaeleaw 97 
                 ++GRe++++ L+++++   + ++++v+l+G  ++GKss+ ++ll +l+++ + +++ +  q+ +s   y  +  aq+++ ++l++ +    +  +le+ 
  CCE27402.1  20 FPGREHQIRSLATLVH-PDAVQCRNVVLHGTEATGKSSITEHLLARLSES-IETASRTQPQYeGSTFQYvtVNAAQCITSRHLFERIVGSVAR-LLEQE 115
                 99*************9.556778*************************99.4443333333347777777555***************99444.44444 PP

      AAA_16  98 rekleealaavpelagaea.......srllellkrll.allsrder..plvlvlDdlqwadeaslqllaaLlrlleskpl 167
                   +     ++v+++++a          +l  +l  +l + + r ++   +vlvlD +++ +ea+l+ll+ L+rl+e+ p+
  CCE27402.1 116 GGRSGLGSGDVDSVPRARIqrrcetlAQLSVALDTMLnNVAVR-DPrwRFVLVLDAIDRQREAPLTLLPGLARLSEMIPC 194
                 4433333344555555555445555566666666666433333.22235*************************997555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.4e-07   0.00052       5     104 ..      41     175 ..      37     206 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.4e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee......erpevvfvtlpsst..sskdllrellralglelka...............erlsseelle 80 
                 ++ +v++G   tGK+   + ll +l e ++ +       e++++ +vt+++    +s+ l+++++  + + l+                +r++ ++  e
  CCE27402.1  41 CRNVVLHGTEATGKSSITEHLLARLSESIETASrtqpqyEGSTFQYVTVNAAQciTSRHLFERIVGSVARLLEQeggrsglgsgdvdsvPRARIQRRCE 139
                 6789*********************999999989999976666669999888889**************999999999999988888885555555555 PP

      AAA_22  81 aleqalrarav............ielliiDEaqhlr 104
                 +l+q + a ++            + +l++D +++ r
  CCE27402.1 140 TLAQLSVALDTmlnnvavrdprwRFVLVLDAIDRQR 175
                 555555555555556666666788888888888774 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     5e-06     0.018      20      94 ..      27     108 ..      11     119 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5e-06
        TniB  20 lerLeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhppe.kdedae.......kvpvlvvqappkpdekrlyaaiLeal 94 
                 +++L+ L  +p++ + +n++l+G  ++GK++i e+  ++ +++ + ++++       +++ ++v+a +  + ++l+++i+ ++
  CCE27402.1  27 IRSLATL-VHPDAVQCRNVVLHGTEATGKSSITEHLLARLSESiETASRTqpqyegsTFQYVTVNAAQCITSRHLFERIVGSV 108
                 5555555.58999**********************98665443122211122333448899999999999999**99998776 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     6e-05      0.22       1      26 [.      43      68 ..      43      87 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6e-05
      AAA_28  1 kivitGgestGKTtlleaLaargypv 26
                ++v+ G+e tGK++++e+L ar  + 
  CCE27402.1 43 NVVLHGTEATGKSSITEHLLARLSES 68
                59*****************9984443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3810.68
//
Query:       CCE27403.1  [L=2184]
Description: uncharacterized protein CPUR_00877 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-127  426.1   4.6   4.1e-127  425.6   4.6    1.2  1  Mus7      Mus7/MMS22 family


Domain annotation for each model (and alignments):
>> Mus7  Mus7/MMS22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.6   4.6  2.3e-131  4.1e-127       2     614 .]    1214    1837 ..    1213    1837 .. 0.95

  Alignments for each domain:
  == domain 1  score: 425.6 bits;  conditional E-value: 2.3e-131
        Mus7    2 EslWqklftllplsevdangitqagar...lkenWslvkrllsrvlersdenkemaasrnrYvrillqrcyfLvsewgWrdaekilltlydfFksrk 95  
                  E++Wq++f llpl e +  g++ ag r   + ++W++++ l+++v++ +++n+ +aas+n+Y+r+l++rc+fLv+ewgWr++  +++ ++dfF++++
  CCE27403.1 1214 ERIWQTMFMLLPLVEFSDSGVLLAGKRheaTSDGWAIPQALMKQVFKLYNANSHQAASFNSYCRALVGRCHFLVQEWGWRKCVSVIGLIFDFFGTHQ 1310
                  99***************************99****************************************************************** PP

        Mus7   96 ladLeeEeeykspafleeLdrapsldieaeddcFhiFlklLalaiqeLreleskkkikrlvsRllPvhkrqytkedpitqsdlaaLrNhhdLlllLl 192 
                  la+L++Ee+yksp+fle+L+ +p+l+ie+ed+cFh+Flkl alaiq++r ++  k++ +lv R+ P+h+rq  k++ ++++dlaaLrNhhdLl++L+
  CCE27403.1 1311 LAHLRNEEVYKSPSFLENLAGRPTLEIEPEDRCFHVFLKLVALAIQKMRDAGCLKDVGNLVARTVPNHNRQHNKDEKVHERDLAALRNHHDLLCVLF 1407
                  ************************************************************************************************* PP

        Mus7  193 wavptslrprleeikslvapkdshkeaclisirawgqlarvkistkedrsllepvvkwfnnvisellkeyelaeseie.....aaiemwksfshala 284 
                  wa+p+++rp+   i+ lvap +shkeacli++raw+q+ar++i+ +e  ++ +p+  w+n ++ +++++y +++s++      +  +   s+s++  
  CCE27403.1 1408 WAAPPEYRPSPTLIQHLVAPVTSHKEACLINLRAWNQVARYVIASGEAWTSWKPFHAWRNTFFDQVMQQYHSVASDVAlqlaaLGKDASHSVSEEVV 1504
                  ******************************************************************************8887755566789999999 PP

        Mus7  285 eqlaeknkrtveslLkvalrslqdviqtsktleaanlllskaqlkqilellksleprvn....qealkviqtfllqpaltteeqqqkqedddarDee 377 
                  + +++ nk+ + ++L v+ r++ dv++ ++ l +a   ++ aql+ i + + ++ p ++    + +l++++ +l +++  + +++++q++++  ++ 
  CCE27403.1 1505 RTTIAINKSALMEVLYVSARASLDVVRHAPDLASATFAMNRAQLRTIFTQFSISPPDLDwgilRTSLSTLEVMLIKIDEFKAQEESQQSESQLLNSA 1601
                  9*************************************************************************8888888888899999******* PP

        Mus7  378 slddiallleeedtkefvelvrsllspalkqllsn...ilgedrctEkavleavvdcwakiaqvLvknglrevwss.qyskfgleswkrirnttkrr 470 
                  + dd+ l l++e++++f+ ++r +ls+    + s     + +d+c+   v+ a+     +i  ++v+ gl    +  + sk++ ++  + +     r
  CCE27403.1 1602 VADDALLALDQELSRSFFSMARCVLSTRCMATESArmaRTDDDDCMQHIVVVAA-----RISMRFVNGGLIRSSDLfNKSKYQMFNALPHQLDLHHR 1693
                  **************************9988544431114667778877666666.....************98888999****************** PP

        Mus7  471 kflllFlakllekdaaavqeieeevlsvwlqslvkrvsslkdehsltevlkkvkrkdptLknlpflaketisislatgenqrlsllsdalanlr... 564 
                  k+l+lF+++ll++d   + ++  ++ ++w+ +lvk+ ++l +e +l + l          +  +++      +   +++n   +l++ a++ +r   
  CCE27403.1 1694 KYLTLFISTLLQYDLDNFDDVGFNLAEAWVCCLVKPRLALHYEVQLGQQLHR--------HGMTLVPGTIAGLCTLPDYNMTRDLFEYAVSSMRksl 1782
                  ****************************************999999998888........666777777688889999******************* PP

        Mus7  565 .....rslsldkdeftellqallrsmksvyekllaskttshgtyvdfvsrlvsfi 614 
                          ++ ++e++ +l+  +++mks++++++   +t+h ++v fv++++s+i
  CCE27403.1 1783 rdagpSLHRTLSAEYSSVLKLAMEQMKSDLKTTSQMHQTQHNDFVLFVQNIISLI 1837
                  999987788999*****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.47
# Mc/sec: 14058.50
//
Query:       CCE27404.1  [L=703]
Description: probable branching enzyme (be1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-24   86.4   0.1    2.8e-24   85.4   0.1    1.6  1  Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
    4.4e-18   65.4   0.1    1.6e-17   63.6   0.0    2.0  2  CBM_48           Carbohydrate-binding module 48 (Isoamylase N
    1.7e-16   60.7   0.1      4e-13   49.7   0.1    2.3  2  Alpha-amylase    Alpha amylase, catalytic domain
  ------ inclusion threshold ------
       0.02   14.3   0.0      0.036   13.5   0.0    1.3  1  Cellulase        Cellulase (glycosyl hydrolase family 5)
      0.043   14.0   0.0       0.13   12.5   0.0    1.8  1  AMPK1_CBM        Glycogen recognition site of AMP-activated p
      0.063   12.4   0.0       0.13   11.3   0.0    1.4  1  hDGE_amylase     Glycogen debranching enzyme, glucanotransfer


Domain annotation for each model (and alignments):
>> Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.1   9.5e-28   2.8e-24       1      95 [.     602     696 ..     602     697 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 9.5e-28
                      EEEEEETTSSEEEEEECTTTEEEEEEE-SSSSEEECEEESSSSSEEEEETTCTTSGCCTTT-.SSTSS-EEEECT..TCBSEEEEEEESTTEEE CS
  Alpha-amylase_C   1 wvsakdeenkviaFeRgdgekllvvfNfhpsnsrqdyrvgvpaagkyrdvlntdaeeyggsg.lgntgkvvtvdd..dgransltltlpprsal 91 
                      ++s k+e++kvi+FeR +   l++vfNfh+s+s++dyr+gv++ag+yr vl+td +  gg + ++ +++++t++   +gr n+ ++++p+r+a+
       CCE27404.1 602 YISLKHEGDKVIVFERAG---LVFVFNFHHSSSFSDYRIGVDVAGTYRAVLHTDGKTVGGFDrIDDNTRFFTTPMewNGRGNWTQVYIPCRTAM 692
                      7999**************...****************************************99**********9999***************** PP

                      EEEE CS
  Alpha-amylase_C  92 vlkv 95 
                      vl++
       CCE27404.1 693 VLAL 696
                      *986 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   5.3e-21   1.6e-17       1      83 [.      72     156 ..      72     157 .. 0.96
   2 ?   -3.0   0.0       3.2   9.7e+03      32      51 ..     664     682 ..     662     688 .. 0.70

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 5.3e-21
                 TSEEEEESSCEEEEEEEE-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEET.....TSTTTT.EEEEEEEETTSCEEEE--TT CS
      CBM_48   1 plGahvsedekgvnfrvwapnAekVslvldfnnwdaeeiplkrrrtggvWelflpg.....dlphgslrYkyrvkgpsgekklllDPy 83 
                 ++G++v++d +++++r+wapnA+++slv+dfnnwd +++p+k ++++gv+e+ l +     +++h+s ++k+ ++ p ge  ++l+++
  CCE27404.1  72 KFGLNVNAD-NSITYREWAPNATSASLVGDFNNWDRSTHPMK-KNEFGVFEIILAArdgqpAIGHNS-KIKISLQLPTGEVVDRLPAW 156
                 69****999.9*******************************.69**********99*********8.*****************999 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.2
                 TTTEEECCB-EEECGGCEEE CS
      CBM_48  32 nnwdaeeiplkrrrtggvWe 51 
                 +n   +++p++  +  g W+
  CCE27404.1 664 DNTRFFTTPME-WNGRGNWT 682
                 45558899999.57888886 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.1   1.3e-16     4e-13      10     100 ..     223     311 ..     220     327 .. 0.83
   2 !    9.2   0.0   0.00026      0.79     144     290 ..     326     482 ..     300     516 .. 0.66

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.3e-16
                    CCCCCCCT-SCEEE-B-CE.-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGGCCC- CS
  Alpha-amylase  10 LdYlkeLGvtaiwlsPifk.spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkrdyyi 100
                    L+ +k+LG ++i l  i++ + +a +gY i+++ +   ++G  edlkeL++ ah++gi v+lD+V  H s+++      l++ + ++++y++
     CCE27404.1 223 LPRIKDLGYNVIQLMAIMEhAYYASFGYQINNFFAASSRYGPPEDLKELVDTAHSLGITVLLDVVHSHASKNVLD---GLNEFDGTDHQYFH 311
                    6779**************9777899*********************************************98763...34444444455555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00026
                    B-TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCC..............HCCHCCHHHHHHHHHHHTC.CGTT-EEEEE-TT-SCCCHC CS
  Alpha-amylase 144 Lnteneevrkelkdvvkfwlekg.idGfRlDvvkhvskveal..............esngeflheftqalnetva.srkevmtvgEvssdasedlr 223
                    +n+ + ev + l   ++fw+++   dGfR D v  +   ++               ++  e    + + +n++ +  + e++t++E  s+    + 
     CCE27404.1 326 FNYGHHEVLRFLLSNLRFWMDEYrFDGFRFDGVTSMLYLHHGvgagfsggyheyfgSDVDEEAVIYLMVANQMLHsLYPEAITIAEDVSGMPALCL 421
                    6888889999999999*****999*******88776553333578888888888875556666677777777766677888888887777666655 PP

                    CCC-CG.G-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEES--TTS- CS
  Alpha-amylase 224 vyttea.rlelemvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeeavtflgnHDqe 290
                    +    +  ++++  + +p++ +++  +   ++++ ++ ++  +l++ ++      e++  + ++HDq+
     CCE27404.1 422 PVPLGGvGFDYRLAMAIPDMWIKTLKE--LKDEQWDMGNICFTLTNRRH-----GERTIAYCESHDQA 482
                    554433146777667777766666665..44444444444444433322.....34556666666665 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.2e-05     0.036      17      85 ..     214     289 ..     190     322 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
                 TSCGGSHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTH........HHHHHHHHHHHHHHHTT-EEEEEEESS CS
   Cellulase  17 wgnpyttkalidevkdagfntvRlpvswgelvenapdykvde........nslerveevvkyakenglyvildiHse 85 
                  +++  tk ++  +kd g+n++ l   ++    ++ +y+++            e+++e+v+ a + g+ v+ld+ + 
  CCE27404.1 214 TYKE-FTKNMLPRIKDLGYNVIQLMAIMEHAYYASFGYQINNffaassryGPPEDLKELVDTAHSLGITVLLDVVHS 289
                 3343.6999***************99984444456777666666666666889********************8553 PP

>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.5e-05      0.13       6      46 ..      87     129 ..      83     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.5e-05
   AMPK1_CBM   6 kWkggGkkVyvtGsfnnW.kkkipLkkse.kdfsvilkLpeGt 46 
                 +W  ++++  + G fnnW +++ p+kk+e ++f++il  ++G+
  CCE27404.1  87 EWAPNATSASLVGDFNNWdRSTHPMKKNEfGVFEIILAARDGQ 129
                 79999*************556789**87779****99888876 PP

>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.3e-05      0.13      25     106 ..     220     294 ..     205     297 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.3e-05
                   HHHHHHHHHTT--EEEES--EEE-TT--.TTSEEEEEEE-TTT-.....SSC.HHHHHHHHHHHHHH--EEEEEE--SEEETT CS
  hDGE_amylase  25 ekvlkeikekgYnmiHftPlqelGesnS.pYSiadqleldkelfeekdkeekeedveklvkklekeygllsltDvVlnHtann 106
                   +++l +ik+ gYn+i +  ++e     S  Y i++           +++    ed+++lv++++ ++g+  l DvV +H+++n
    CCE27404.1 220 KNMLPRIKDLGYNVIQLMAIMEHAYYASfGYQINNFFAA-------SSRYGPPEDLKELVDTAH-SLGITVLLDVVHSHASKN 294
                   568899**************9998766634666554444.......444456689*****9875.79*************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 4726.47
//
Query:       CCE27405.1  [L=411]
Description: related to MCX1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-32  111.8   0.0    6.8e-32  110.9   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
    1.9e-12   47.8   0.0    2.8e-12   47.2   0.0    1.3  1  AAA              ATPase family associated with various cellul
    1.9e-07   31.1   0.0    3.6e-07   30.1   0.0    1.5  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
      5e-07   29.8   0.0    1.7e-06   28.0   0.0    1.9  2  AAA_5            AAA domain (dynein-related subfamily)
    7.5e-05   23.0   0.1    0.00049   20.4   0.1    2.1  1  AAA_22           AAA domain
    0.00012   21.3   0.0    0.00021   20.5   0.0    1.3  1  MCM              MCM P-loop domain
     0.0012   19.3   0.0      0.004   17.6   0.0    1.8  1  AAA_16           AAA ATPase domain
     0.0014   18.1   0.0     0.0023   17.4   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
     0.0084   16.1   0.0      0.014   15.4   0.0    1.3  1  AAA_14           AAA domain
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.021   14.5   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
       0.02   14.6   0.0       0.03   14.0   0.0    1.2  1  AAA_24           AAA domain
      0.065   12.3   0.0       0.11   11.5   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
      0.085   12.6   0.0       0.23   11.2   0.0    1.7  1  AAA_29           P-loop containing region of AAA domain
       0.09   12.2   0.0       0.44    9.9   0.0    1.9  2  TniB             Bacterial TniB protein
      0.099   12.3   0.0       0.28   10.9   0.0    1.7  2  Sigma54_activat  Sigma-54 interaction domain
       0.12   12.9   0.0       0.23   12.0   0.0    1.5  1  AAA_18           AAA domain
       0.14   11.7   0.0         20    4.7   0.0    2.4  2  AAA_25           AAA domain
       0.15   11.8   0.0       0.34   10.6   0.0    1.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
       0.15   12.5   0.0       0.26   11.8   0.0    1.4  1  ABC_tran         ABC transporter
       0.17   11.7   0.0       0.29   10.9   0.0    1.3  1  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
        0.2   11.6   0.0       0.33   10.9   0.0    1.3  1  Rad17            Rad17 P-loop domain
       0.22   11.8   1.1       0.54   10.6   0.0    2.1  3  AAA_19           AAA domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.0   8.3e-35   6.8e-32       3     170 ..      31     274 ..      29     275 .. 0.95

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 8.3e-35
                 ---EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----.---------HHHH CS
       AAA_2   3 iisilllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyvgaeegGivllDEidKihpk.essgadvSregVq 96 
                 ++++ll+gptgvGkt++ ++l++ ++v    ++++ d+++l++    +++ve+ ++rl+++++++v+a e Giv lDE dK +++ + +g+dv +egVq
  CCE27405.1  31 KSNLLLIGPTGVGKTYILETLSKQINV----PFTICDCNSLTQagyiGQDVESCIERLLIESNYDVKATEYGIVVLDEFDKLARReSPTGRDVGGEGVQ 125
                 7899**********************8....******************************************************9999********** PP

                 HHHHHHHH--EE-....................................------EE-TT-EEEEEE--TTHHHHTTTS-S.................. CS
       AAA_2  97 rdLLqileggtlt....................................dkqgrkvdtknilfImtgafgsskisdesrsk.................. 141
                 ++LL+++eg+++t                                    + ++ ++dt+nilf++ gaf + +++  +r                    
  CCE27405.1 126 QALLKLVEGTKVTisvkenhssrasppittnynsagsgsstpqsappggKVDQYTIDTSNILFVFCGAFVGLDKAVLRRVAkpsmgfggelrgrsslag 224
                 ************************************************8444457*******************99888889***************** PP

                 .....................TTTTSGGG--HHHHHHTT--HHHHTT--E CS
       AAA_2 142 .....................eeeeekkkeeveeelkkglipEllgRlpe 170
                                      ++ +     ++ ++ ++g+ipEl+gRl  
  CCE27405.1 225 dkqvlppslfshvahhdampiSSFTALDLATPADLQTFGFIPELIGRLHN 274
                 ******************998777788889999**************986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   3.5e-15   2.8e-12       1      99 [.      34     138 ..      34     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 3.5e-15
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS.....TSEEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvgesekkirelfkeakeka.....kpsilfiDEidalaksr.sgseseeeervvnqLlte 92 
                 +ll+Gp G+GKT++ + + k+++v+f   ++ +l+   y+g+  ++  e +  ++++      +  i+++DE+d+la+++  ++ +  +e v+++Ll+ 
  CCE27405.1  34 LLLIGPTGVGKTYILETLSKQINVPFTICDCNSLTqAGYIGQDVESCIERLL-IESNYdvkatEYGIVVLDEFDKLARREsPTGRDVGGEGVQQALLKL 131
                 69*********************************65688877666555542.222224666555***************54456777889999***** PP

                 HHHTTTS CS
         AAA  93 ldgvkkk 99 
                 ++g k  
  CCE27405.1 132 VEGTKVT 138
                 *999874 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   4.5e-10   3.6e-07       1      69 [.     281     353 ..     281     361 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 4.5e-10
                    SCHHHHHHHHHH...HHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHH CS
  ClpB_D2-small   1 LtkeelkkIvdl...alkklekrlke.rgvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeil 69 
                    L+ e+l k++++    l  +++ l e    +l +t++al a+ae++  + +GAR L+  ++r +  p+++++l
     CCE27405.1 281 LSSEDLLKVLTQprnCLVAQYTALFEtYPSRLFFTEKALHAIAERAATSGTGARALKMEMERVLAEPIFDAPL 353
                    7899999***999999999*****98788***************************************99987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.1e-09   1.7e-06       1      78 [.      33     109 ..      33     112 .. 0.92
   2 ?   -2.2   0.0       4.7   3.8e+03       8      34 ..     329     360 ..     328     388 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.1e-09
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG-- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEverae 78 
                 ++lL+Gp+G+gK+ + e l++ +n ++++  +++ t++  + + +e    ++ l +s +  +a+e  i+vlDE++++ 
  CCE27405.1  33 NLLLIGPTGVGKTYILETLSKQINVPFTICDCNSLTQAGYIGQDVES-CIERLLIESNYDVKATEYGIVVLDEFDKLA 109
                 69*******************************************95.7778888888888999**********9976 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.7
                 SSSSHHHHHHHGGGGB.....S--EEEEE--T CS
       AAA_5   8 pGtgKselaerlaaal.....nreveyvqltr 34 
                 +Gtg + l +++ ++l      +++ yv++++
  CCE27405.1 329 SGTGARALKMEMERVLaepifDAPLPYVLIHE 360
                 68888888888888887666788888888876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1     6e-07   0.00049       5      66 ..      31      83 ..      28     140 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 6e-07
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralgl 66
                ++ l+++G++G+GKT+ l++l +q          ++++  ++++s+t    + +++ + +++
  CCE27405.1 31 KSNLLLIGPTGVGKTYILETLSKQI---------NVPFTICDCNSLTQAGYIGQDVESCIER 83
                6789********************9.........9999999**9999777776666665553 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.5e-07   0.00021      54     136 ..      28     111 ..      18     115 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.5e-07
                 BCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEE.ESSSSSSSHSSSEEEEESSSSSEEEEETHHHHTT.TSEEEEESGGGSTCH CS
         MCM  54 lrgdinvllvgdpgtaKsqlLkyveklapravyt.sgkgssaagLtaavvrdeetgefvleaGalvlad.kGvcciDefdkmkee 136
                  + + n+ll+g  g++K+ +L++++k ++    +   ++ ++ag   + v +  +  + +e+   v a+  G++++Defdk  ++
  CCE27405.1  28 KIDKSNLLLIGPTGVGKTYILETLSKQINVPFTIcDCNSLTQAGYIGQDVESCIE-RLLIESNYDVKATeYGIVVLDEFDKLARR 111
                 46789*******************98887765551578899****9999966655.588888887877516**********9875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.9e-06     0.004      25      63 ..      32      67 ..      24     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.9e-06
      AAA_16 25 elvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                +++ll+G+ GvGK+ ++++l ++++     f+ ++c +l
  CCE27405.1 32 SNLLLIGPTGVGKTYILETLSKQINVP---FTICDCNSL 67
                799*******************99966...666666666 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.9e-06    0.0023      33      89 ..      31      84 ..      25     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.9e-06
       AAA_7 33 kkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekr 89
                k ++ll+GptG+GKt i+++l k+++   + ++++ +++ t+a  + + +es++e+ 
  CCE27405.1 31 KSNLLLIGPTGVGKTYILETLSKQIN---VPFTICDCNSLTQAGYIGQDVESCIERL 84
                6799******************9999...7788888999999999888888888874 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.7e-05     0.014       5      88 ..      34     133 ..      30     160 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe...kllelileklke...ekktylflDEiqev.............pewekalk 84 
                 l++ G+  vGKT++l++l k+       +   ++++ +++ +  ++    +++l+ e+ ++    +  +++lDE  ++             +++++al 
  CCE27405.1  34 LLLIGPTGVGKTYILETLSKQIN---VPFTICDCNSLTQAGYIGQDvesCIERLLIESNYDvkaTEYGIVVLDEFDKLarresptgrdvggEGVQQALL 129
                 7899***********99987766...5566666666666554433211234455555522254456667*****9998777777777777766666666 PP

      AAA_14  85 slvd 88 
                 +lv+
  CCE27405.1 130 KLVE 133
                 6666 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.6e-05     0.021      46      70 ..      30      54 ..      12      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-05
   IstB_IS21 46 kkenivllGpsGvGKshlaialgve 70
                +k n++l+Gp+GvGK+++  +l+++
  CCE27405.1 30 DKSNLLLIGPTGVGKTYILETLSKQ 54
                578**************99888765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.7e-05      0.03       3      78 ..      32     109 ..      30     119 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.7e-05
      AAA_24   3 lkiliyGpsgiGKTtlakel....gpkplfidtekGlksldadkfpdie.swedfldevvelaaeladyktlviDtidele 78 
                  ++l++Gp g+GKT+++ +l       + ++d++  l +  +  ++d+e  +e +l e ++ + +  +y ++v+D  d+l 
  CCE27405.1  32 SNLLLIGPTGVGKTYILETLskqiNVPFTICDCNS-LTQ-AGYIGQDVEsCIERLLIESNY-DVKATEYGIVVLDEFDKLA 109
                 5799****************887777778888887.322.223333444234444444444.4556668888888888876 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.11     129     155 ..      31      57 ..      25      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
       T2SSE 129 rglilvsGgTgsGKttllyallkeink 155
                 + ++l+ G+Tg GKt +l +l k+in 
  CCE27405.1  31 KSNLLLIGPTGVGKTYILETLSKQINV 57 
                 7899*******************9985 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00028      0.23      17      40 ..      27      49 ..      22      57 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
      AAA_29 17 ieidlkgatlltGpsGsGKSTllD 40
                ++id + + ll+Gp+G+GK+ +l 
  CCE27405.1 27 VKIDKS-NLLLIGPTGVGKTYILE 49
                678855.5***********98885 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00053      0.44      35      57 ..      31      53 ..      22      59 .. 0.82
   2 ?   -0.9   0.0       1.1   9.3e+02     116     133 ..      93     110 ..      87     119 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00053
        TniB 35 mpnlllvGdsnnGKtmivekFar 57
                 +nlll+G++ +GKt i+e  ++
  CCE27405.1 31 KSNLLLIGPTGVGKTYILETLSK 53
                489**************998665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.1
        TniB 116 relkvrvLiiDEihnlla 133
                 ++++  ++++DE+++l +
  CCE27405.1  93 KATEYGIVVLDEFDKLAR 110
                 56778899******9875 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00034      0.28      20      62 ..      29      68 ..      14      73 .. 0.81
   2 ?   -3.3   0.0       7.6   6.2e+03      90     105 ..      93     108 ..      91     111 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00034
                     TSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS- CS
  Sigma54_activat 20 ktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaip 62
                       ++++l+ G +G+GK+++ +++   sk+ + pf   +c +++
       CCE27405.1 29 IDKSNLLLIGPTGVGKTYILETL---SKQINVPFTICDCNSLT 68
                     456899************98876...55667899999998765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.6
                      HHTTTSEEEEETGGGS CS
  Sigma54_activat  90 ekadgGtlfLDeigel 105
                      ++++ G++ LDe  +l
       CCE27405.1  93 KATEYGIVVLDEFDKL 108
                      67788*******9887 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00028      0.23       2      25 ..      35      71 ..      34     114 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00028
      AAA_18  2 lltGtpGvGKttlakeLskrlgf.............g 25
                ll G+ GvGKt + + Lsk  ++             g
  CCE27405.1 35 LLIGPTGVGKTYILETLSKQINVpfticdcnsltqaG 71
                689****************976675544444444442 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.031        26      34      50 ..      32      48 ..       6      55 .. 0.84
   2 ?    4.7   0.0     0.024        20     136     183 ..      91     139 ..      64     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.031
      AAA_25 34 elallaGapgtGKttla 50
                +  ll+G++g+GKt ++
  CCE27405.1 32 SNLLLIGPTGVGKTYIL 48
                5579**********987 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.024
      AAA_25 136 aieevegvrlvviDplsralggdensnsdv..galvealeriarrtgaav 183
                 +++++ +++ vv+D ++++ + ++   +dv  + + +al ++ + t++++
  CCE27405.1  91 DVKAT-EYGIVVLDEFDKLARRESPTGRDVggEGVQQALLKLVEGTKVTI 139
                 67884.5***************9999999886777778888888888775 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00042      0.34      35      74 ..      33      72 ..      23      84 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00042
      RuvB_N 35 hvllyGpPGlGkttlakiiakelgvklkitsgPvlekagd 74
                 +ll+Gp G+Gkt + + ++k+++v + i     l +ag 
  CCE27405.1 33 NLLLIGPTGVGKTYILETLSKQINVPFTICDCNSLTQAGY 72
                579***********************99999888888775 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00032      0.26      13      37 ..      33      57 ..      26     149 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00032
                EEEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkp 37
                 + ++G++G GK+ +l++l+++ + 
  CCE27405.1 33 NLLLIGPTGVGKTYILETLSKQINV 57
                5789****************98765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00035      0.29       3      20 ..      35      52 ..      34      73 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00035
      AAA_21  3 vliGpNgsGKSnLLdald 20
                +liGp g+GK+++L++l+
  CCE27405.1 35 LLIGPTGVGKTYILETLS 52
                69**************94 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0004      0.33      46      70 ..      32      56 ..      20      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0004
       Rad17 46 riLLisGPsGCgkstvvkvLskelg 70
                  LL+ GP+G gk+ +++ Lsk+  
  CCE27405.1 32 SNLLLIGPTGVGKTYILETLSKQIN 56
                458889****************865 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00066      0.54       7      32 ..      28      53 ..      25      72 .. 0.87
   2 ?   -2.5   0.0       7.2   5.9e+03      95     114 ..      89     108 ..      63     112 .. 0.68
   3 ?   -2.3   0.1       6.1     5e+03      50      65 ..     314     329 ..     309     347 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
      AAA_19  7 alkekvllvtaGpGtGKTrvlkhiva 32
                ++ +++ll++++ G GKT++l++  +
  CCE27405.1 28 KIDKSNLLLIGPTGVGKTYILETLSK 53
                577899***************98766 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.2
      AAA_19  95 eeekklqeee.llivDEfqdv 114
                 + + k   e+ +++ DEf  +
  CCE27405.1  89 NYDVKA-TEYgIVVLDEFDKL 108
                 344444.44559999999766 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6.1
      AAA_19  50 ftgrAakelrerlaal 65 
                 ft++A + ++er a+ 
  CCE27405.1 314 FTEKALHAIAERAATS 329
                 8999999999988544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2889.86
//
Query:       CCE27406.1  [L=168]
Description: probable cytochrome-c oxidase chain V precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-48  163.1   0.0    4.2e-48  162.9   0.0    1.0  1  COX4            Cytochrome c oxidase subunit IV
  ------ inclusion threshold ------
      0.037   14.1   0.2       0.14   12.2   0.0    2.0  2  Unstab_antitox  Putative addiction module component


Domain annotation for each model (and alignments):
>> COX4  Cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.0   4.7e-52   4.2e-48       2     138 .]      28     163 ..      27     163 .. 0.98

  Alignments for each domain:
  == domain 1  score: 162.9 bits;  conditional E-value: 4.7e-52
        COX4   2 gansnptyvd...rwenplpdirfreqseeikaLkekekgdWkeLsleEkkalyrisFgqtlpemkaptkewkkvlggvlillglslllfllirlfvag 97 
                 +a+snpt+ +   rwe ++     +eq++++++L++++kg+W++L+l+Ekka+y+i+Fg+++p++  p++  ++v++gv+i+lg+sl +f++ir+f a+
  CCE27406.1  28 TAISNPTLKNiekRWEGMPL----QEQADLWMSLRDRMKGSWTDLTLQEKKAAYYIAFGPHGPRTVDPPGSGARVAWGVAIGLGVSLSIFAIIRSF-AR 121
                 689*****************....*****************************************99999**************************.** PP

        COX4  98 pvpkTlskewqeaqlermldlkinpitGlssk.wdyekkvwk 138
                 p+p T++kewqea++er++ +k++pitG+ss+ ++++++v++
  CCE27406.1 122 PAPITMNKEWQEASNERLIAQKADPITGISSEgYKGKGMVQS 163
                 ***************************************996 PP

>> Unstab_antitox  Putative addiction module component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.27   2.4e+03      13      19 ..      52      58 ..      45      72 .. 0.70
   2 ?   12.2   0.0   1.6e-05      0.14      13      52 ..     114     153 ..     112     154 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.27
  Unstab_antitox 13 dLwdSLd 19
                    dLw SL 
      CCE27406.1 52 DLWMSLR 58
                    5666665 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.6e-05
  Unstab_antitox  13 dLwdSLde.eadpelpaawkaElerRlaeyeaGkvkaipwe 52 
                     ++++S ++ +++  + ++w++  ++Rl + +a+++++i+ e
      CCE27406.1 114 AIIRSFARpAPIT-MNKEWQEASNERLIAQKADPITGISSE 153
                     7999****77777.************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1289.64
//
Query:       CCE27407.1  [L=171]
Description: uncharacterized protein CPUR_00881 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1429.25
//
Query:       CCE27408.1  [L=517]
Description: H+-transporting ATP synthase beta chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-62  209.5   0.0    6.3e-62  209.0   0.0    1.3  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
      1e-22   80.4   0.6    6.5e-22   77.8   0.4    2.3  2  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
  ------ inclusion threshold ------
      0.015   15.6   1.0       0.48   10.7   0.2    2.9  3  AAA_19         AAA domain
      0.017   15.0   0.5      0.034   14.0   0.1    1.7  2  RsgA_GTPase    RsgA GTPase
      0.022   13.9   0.4       0.08   12.1   0.1    1.9  2  NB-ARC         NB-ARC domain
      0.023   14.6   0.0      0.055   13.4   0.0    1.5  2  ATPase_2       ATPase domain predominantly from Archaea
      0.025   15.0   0.1       0.64   10.4   0.0    2.7  2  AAA            ATPase family associated with various cellular
      0.041   13.2   0.1      0.068   12.5   0.1    1.3  1  ATPase         KaiC
      0.053   13.4   0.1       0.12   12.2   0.0    1.6  2  NACHT          NACHT domain
      0.065   13.1   0.9       0.34   10.8   0.9    2.0  1  T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
      0.083   13.3   0.0       0.17   12.3   0.0    1.5  1  RNA_helicase   RNA helicase
       0.15   12.4   0.1        0.5   10.7   0.1    1.9  1  AAA_16         AAA ATPase domain


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.0   0.0   4.2e-65   6.3e-62       1     213 []     174     392 ..     174     392 .. 0.96

  Alignments for each domain:
  == domain 1  score: 209.0 bits;  conditional E-value: 4.2e-65
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSS..EEEEEEESEEHHHHHHHHHHCHHSS.....GGGGEEEEEEETTS-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsdd..aiiyvgiGergnevaevleefpegt.....imkrtvlvantsnepvaareasiy 91 
                  Gi+v+D+l p+++G++++++g++gvGktv +q+l+++  +++  ++++ g+Ger++e +++++e++e++       +++ lv+ ++nep+ ar ++++
   CCE27408.1 174 GIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHggYSVFTGVGERTREGNDLYHEMQETSviqldGESKVALVFGQMNEPPGARARVAL 271
                  99*********************************998887457***********************7644344667********************* PP

                  HHHHHHHHHHH.TTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSS CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  92 tgitlAEyfrd.qgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgitd 188
                  tg+t+AEyfrd +g++vll++d+++r+++A  e+s++lg++p++ gy+++l+ ++  ++ER++++  ++Gs+t+v+av+++++D++dp + +t++++d
   CCE27408.1 272 TGLTVAEYFRDqEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLAVDMGGMQERITTT--KKGSITSVQAVYVPADDLTDPAPATTFAHLD 367
                  ***********99****************************************************..89***************************** PP

                  EEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 189 gfivLdkklaqrkhfPainvlvSvS 213
                  +++vL++ + + +++Pa+++l S+S
   CCE27408.1 368 ATTVLSRGISELGIYPAVDPLDSTS 392
                  ***********************98 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.4   4.4e-25   6.5e-22       1      69 []      50     117 ..      50     117 .. 0.96
   2 ?   -0.4   0.0       1.1   1.7e+03       3      23 ..     463     483 ..     461     486 .. 0.81

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 4.4e-25
                    EEEEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N   1 ivqviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69 
                    i qviG+vvdv+f++++lp+i+n le++ +++ +l+l+v ++lge++Vr+i+m++t+Gl+rG++ ++TG
     CCE27408.1  50 IHQVIGAVVDVKFENAKLPAILNSLETD-NNGAKLVLEVSQHLGENVVRCIAMDGTEGLVRGAKAIDTG 117
                    67**************************.5578899********************************9 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
                    EEETTEEEEESSTSCETCTTE CS
  ATP-synt_ab_N   3 qviGpvvdvefgigrlpgiyn 23 
                     + G++vd ++ i+   +i+n
     CCE27408.1 463 GIEGKLVDLKDTIASFKAILN 483
                    578********9997766665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.32   4.9e+02      16      30 ..      42      56 ..      29      81 .. 0.74
   2 ?   10.7   0.2   0.00032      0.48       9      38 ..     186     215 ..     180     223 .. 0.84
   3 ?   -0.1   0.0      0.72   1.1e+03      69     118 ..     360     440 ..     326     450 .. 0.58

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.32
      AAA_19 16 taGpGtGKTrvlkhi 30
                taG+G GK + + ++
  CCE27408.1 42 TAGAGVGKIHQVIGA 56
                8*******7644333 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00032
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelg 38 
                 + + + + +G+G GKT  +++ ++ + +++
  CCE27408.1 186 RGGKIGLFGGAGVGKTVFIQELINNIAKAH 215
                 56678899**************99988776 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.72
      AAA_19  69 atTiHrlal..................................ldfddlltealelleeaeeekklqeee.llivDEfqdvdelq 118
                 atT+ +l                                     ++ + l    ++l   +e k lq+   +l  DE ++ d+l 
  CCE27408.1 360 ATTFAHLDAttvlsrgiselgiypavdpldstsrildpriigeEHYSTAL-RVQQIL---QEYKSLQDIIaILGMDELSEADKLT 440
                 66665554455555555666666666665555555555554431111111.222222...3455666666688899999988665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.3e-05     0.034      90     156 ..     178     244 ..     164     254 .. 0.86
   2 ?   -3.5   0.0       5.8   8.7e+03      44      64 ..     418     440 ..     410     476 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
                  HHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEE CS
  RsgA_GTPase  90 leelkellkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglli 156
                  ++ l+++ ++  + l G  GvGK+ +i +l+++   + g  s  +g G  T     l++  +++ +i
   CCE27408.1 178 VDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTREGNDLYHEMQETSVI 244
                  5667788888888899***********************************9999999987777776 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.8
                  HTT-EEEEEEE-GGG--HHH..H CS
  RsgA_GTPase  44 ekgiepvivlnKiDlleeee..e 64 
                   k ++ +i++  +D l+e++  +
   CCE27408.1 418 YKSLQDIIAILGMDELSEADklT 440
                  44455555555555555555222 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   5.4e-05      0.08      23      57 ..     190     224 ..     177     260 .. 0.83
   2 ?   -0.9   0.0       0.5   7.4e+02       8     100 ..     411     451 ..     404     457 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.4e-05
                 EEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEE CS
      NB-ARC  23 valvGmgGvGKttlakqilnksdevegrFdsvawv 57 
                 ++l G +GvGKt+ +++ +n+ ++ +g + ++  v
  CCE27408.1 190 IGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGV 224
                 799******************99999999887655 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.5
                 HHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESXXHHHHHHHXXHHHHHCCCTTSSSS-STTSHHHHHHHHC CS
      NB-ARC   8 viekLlekdelqslvvalvGmgGvGKttlakqilnksdevegrFdsvawvvvsktdkseeiletilkeLslseddleekeeveslkrklvrlL 100
                 v++ L e ++l                                                   ++i++ L+  e     k +ve ++rk++r+L
  CCE27408.1 411 VQQILQEYKSL---------------------------------------------------QDIIAILGMDELSEADKLTVE-RARKIQRFL 451
                 44444444444...................................................445555554444444444444.555555555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.7e-05     0.055      25     136 ..     192     304 ..     187     320 .. 0.67
   2 ?   -3.5   0.0       5.1   7.6e+03     124     138 ..     430     444 ..     410     477 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.7e-05
    ATPase_2  25 iYGpegsGKtaLlkeiienl.edkdkyviyyialreesiskldefie.eeeekkklekalgiavpkaeleeilkeksklvfkaielllekikkkgkkii 121
                 ++G  g+GKt +++e+i+n  + ++ y ++    ++ ++ +     e +e ++ +l+   + a+   +++e    + + +   ++ +     ++g+ + 
  CCE27408.1 192 LFGGAGVGKTVFIQELINNIaKAHGGYSVFTGVGERTREGNDLYH-EmQETSVIQLDGESKVALVFGQMNEPPGARARVALTGLTVAEYFRDQEGQDVL 289
                 6999****************6777779999887777666553333.22344444444433333222233333335667777777777777788888899 PP

    ATPase_2 122 iiiDelqklidlgln 136
                 ++iD +++  + g++
  CCE27408.1 290 LFIDNIFRFTQAGSE 304
                 999999998866655 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.1
    ATPase_2 124 iDelqklidlglnga 138
                 +Del ++ +l++++a
  CCE27408.1 430 MDELSEADKLTVERA 444
                 444444444433322 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00043      0.64       3      74 ..     192     302 ..     190     315 .. 0.63
   2 ?    1.2   0.0       0.3   4.5e+02      42      74 ..     407     437 ..     390     459 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00043
                 EESSTTSSHHHHHHHHHHHH.....THE.......................EEEEETTTCSSS..................STTHHHHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel.....gve.......................fleisgsellsk..................yvgesekkirelfkeake 55 
                 l+G  G+GKT +++ +++++     g +                       +++++g     +                   v  +   ++e+f++  e
  CCE27408.1 192 LFGGAGVGKTVFIQELINNIakahgGYSvftgvgertregndlyhemqetsVIQLDG-----EskvalvfgqmneppgaraRVALTGLTVAEYFRDQ-E 284
                 89*****************64333312233444444444444444433333333333.....14455677777777777777777888888888774.4 PP

                 TSTSEEEEEETGGGHHHHH CS
         AAA  56 kakpsilfiDEidalaksr 74 
                  +  + lfiD+i +++++ 
  CCE27408.1 285 GQ-DVLLFIDNIFRFTQAG 302
                 43.5888999887776665 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA  42 sekkirelfkeakekakpsilfiDEidalaksr 74 
                 ++ +++++++e k+ +   i+ i  +d+l +++
  CCE27408.1 407 TALRVQQILQEYKSLQ--DIIAILGMDELSEAD 437
                 6678999999999998..455544444444433 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.6e-05     0.068       3      70 ..     173     241 ..     171     272 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.6e-05
      ATPase   3 tgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa...edlrenaksl 70 
                 tgI+  D +    + +g  + + G++G GKt+f ++ + + a+  g   vf  v e+    +dl++++++ 
  CCE27408.1 173 TGIKVVDLLA--PYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTregNDLYHEMQET 241
                 7888888775..788999999***********************************998888888888765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.3e-05      0.12       6      28 ..     193     215 ..     190     268 .. 0.85
   2 ?   -3.4   0.0       5.4   8.1e+03      55      77 ..     422     444 ..     409     457 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.3e-05
                 EC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT   6 qGeaGsGKTtLlqklalawaegk 28 
                  G aG+GKT+++q+l+  +a+ +
  CCE27408.1 193 FGGAGVGKTVFIQELINNIAKAH 215
                 699*****************988 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.4
                 CHHHCCCCTS--SSS-CCHHHHC CS
       NACHT  55 adllfsqlpepaapvsevwavll 77 
                 +d+++  + ++ ++ ++  ++++
  CCE27408.1 422 QDIIAILGMDELSEADKLTVERA 444
                 44444444444444444333333 PP

>> T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   0.00023      0.34       3      57 ..     402     455 ..     400     468 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
  T3SS_ATPase_C   3 pehlqaarklrellatyqenedLiniGaYkkGsd..pelDe.AiakrpainafLkQgv 57 
                    +eh+  a ++ ++l+ y++ +d+i i     G d  +e D+  +++  +i++fL Q+ 
     CCE27408.1 402 EEHYSTALRVQQILQEYKSLQDIIAI----LGMDelSEADKlTVERARKIQRFLSQPF 455
                    89**********************99....4444335566535777777777777765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00012      0.17       3      26 ..     192     215 ..     190     250 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l+G +g+GK+++++eL+++++k+ 
    CCE27408.1 192 LFGGAGVGKTVFIQELINNIAKAH 215
                   89*******************776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00034       0.5      27      62 ..     190     227 ..     176     322 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00034
      AAA_16  27 vllsGesGvGKsslvrellralekdggif..lrgkcdq 62 
                 + l G +GvGK+  ++el + + k++g +  ++g  ++
  CCE27408.1 190 IGLFGGAGVGKTVFIQELINNIAKAHGGYsvFTGVGER 227
                 557899**************999996444234443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3363.07
//
Query:       CCE27409.1  [L=636]
Description: uncharacterized protein CPUR_00883 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-18   65.6  23.3    2.4e-09   37.1   6.1    2.3  2  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain
    0.00055   18.9   0.4    0.00099   18.0   0.4    1.4  1  Fungal_trans_2  Fungal specific transcription factor domain
  ------ inclusion threshold ------
       0.42   10.2  11.3        2.8    7.6  11.3    2.2  1  PT              PT repeat
        1.8    8.4  15.7        2.9    7.7   1.8    3.3  2  PSI_integrin    Integrin plexin domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   6.1   5.4e-13   2.4e-09       1      36 [.      71     106 ..      71     110 .. 0.91
   2 !   34.4   9.2   3.9e-12   1.7e-08       2      39 ..     172     209 ..     171     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 5.4e-13
                 SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTC CS
     Zn_clus   1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfyses 36 
                 ++C+nC+++KvKCd++ P+C+ C ++   C++++ +
  CCE27409.1  71 TGCQNCKSRKVKCDEELPSCQTCLSRKDFCVYITPF 106
                 58*****************************87765 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 3.9e-12
                 S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39 
                 +C+nC+++KvKCd+++P+C+ C  +  +C+++  ssk+
  CCE27409.1 172 GCQNCKSRKVKCDEERPSCRLCLLRKEDCVYIAPSSKK 209
                 6*****************************99999887 PP

>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.4   2.2e-07   0.00099       5      98 ..     277     371 ..     273     378 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.2e-07
  Fungal_trans_2   5 yyldnvapllspvpessnpfrkvllplalsnkallhallalsafhlqskgpkds.lereakrykslalkelqealaelsstlsrnekykdiLaai 98 
                     ++ ++++ ++s   +s++  r  +++ al  ++ll ++lals++h  +  +++     + ++y++++l+e + a++  + ++      +++L+++
      CCE27409.1 277 HFMTHTCSSFSSEGDSQKVMRVHVMKHALDVRFLLRSVLALSCLHARTCTGEQLgDAARHRSYQTESLQEYRMAIEAAEPRTFGALMANSLLVTV 371
                     9*********************************************66666666546788899999******99998776655445555555555 PP

>> PT  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  11.3   0.00063       2.8       2      35 ..      17      50 ..      15      52 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00063
          PT  2 ptaqPtaqPTvqPTgqPtaqPTdqPtaqPtdaPt 35
                p+a P+++P+ + ++  +a+P++ P+a+P++ P+
  CCE27409.1 17 PSAGPSSGPSAESSADVSAEPSSDPSAEPPSDPS 50
                6677777777777777788888888888888887 PP

>> PSI_integrin  Integrin plexin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.5    0.0011       4.9       2      21 ..      82     102 ..      74     115 .. 0.91
   2 ?    7.7   1.8   0.00064       2.9       2      21 ..     182     202 ..     174     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0011
  PSI_integrin   2 sCksa.ksCkeCiqsgpsCaW 21 
                   +C    +sC+ C++ +  C++
    CCE27409.1  82 KCDEElPSCQTCLSRKDFCVY 102
                   588889*************97 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00064
  PSI_integrin   2 sCksa.ksCkeCiqsgpsCaW 21 
                   +C    +sC+ C++ +++C++
    CCE27409.1 182 KCDEErPSCRLCLLRKEDCVY 202
                   577778*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       865  (0.0482459); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4348.40
//
Query:       CCE27410.1  [L=494]
Description: uncharacterized protein CPUR_00884 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-16   60.4   0.0    4.5e-10   39.5   0.0    3.1  3  PLDc_2          PLD-like domain
      2e-06   27.7   0.2      0.029   14.6   0.1    2.6  2  PLDc            Phospholipase D Active site motif
  ------ inclusion threshold ------
      0.031   13.5   0.1       0.25   10.5   0.0    2.2  2  Regulator_TrmB  Archaeal transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.28   1.7e+03       2      26 ..      64      91 ..      63     104 .. 0.69
   2 !   16.8   0.0   7.9e-07    0.0047      65     106 ..     153     197 ..     141     215 .. 0.78
   3 !   39.5   0.0   7.6e-14   4.5e-10       1     118 [.     316     470 ..     316     481 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.28
      PLDc_2  2 iqliksAkksidiatyyfvsdrei...l 26
                i ++  A++si+++t y  +++++    
  CCE27410.1 64 IPAMLDARTSIHFVTCYWATSPSLeaiS 91
                56677899**********7777653333 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 7.9e-07
      PLDc_2  65 lleagvevrvfetll...gslHaKlylidgktvivGSsNltkrgl 106
                 l+++g+++ v   ++   + +H K++++dgk +++ S+N + + +
  CCE27410.1 153 LASGGIQLTVKSLFFtplSVMHPKYVIVDGKRAFIPSCNVSWEEW 197
                 47888887774322245699*******************987766 PP

  == domain 3  score: 39.5 bits;  conditional E-value: 7.6e-14
      PLDc_2   1 liqliksAkksidiatyyfvsdreildallkaakrgvkvrilldskkd.............................dagavdeaslkelkellleagv 70 
                 l++li++A++ i i t+ + ++  +l+ ll+a +rgv+v+i +++                                +++ + ++ +   ++ ++ + +
  CCE27410.1 316 LLTLIANARHDITITTPNV-TSWPVLEVLLEALARGVNVQIRTSKGMMiieqlvtagtttswclkkfitkyqklhqkQMQQQSDPLQDLEAQPVRPGRL 413
                 5789***************.************************9555**********************99999975555555555555555566667 PP

      PLDc_2  71 evrvfe...tll.......gslHaKlylidgktvivGSsNltkrgldlnlElnvvied 118
                 ++  ++   +          + H K+ ++d++++++GS N++++++   +El++ ++ 
  CCE27410.1 414 DILYYKpwaH-RsgladepVFSHFKMTMVDNEYLVLGSGNMDRASWWTSQELGILFHV 470
                 7777774431.13444567889************************9999*9998875 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0001       0.6       5      21 ..     173     189 ..     171     194 .. 0.86
   2 !   14.6   0.1   4.8e-06     0.029       6      27 ..     435     456 ..     432     457 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0001
                 E---EEEETTTEEEEE- CS
        PLDc   5 hHqKivivDdrvafvGg 21 
                 +H K vivD+++af+ +
  CCE27410.1 173 MHPKYVIVDGKRAFIPS 189
                 799***********955 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 4.8e-06
                 ---EEEETTTEEEEE---SSHH CS
        PLDc   6 HqKivivDdrvafvGgaNLcdg 27 
                 H K+ +vD+++ ++G+ N+++ 
  CCE27410.1 435 HFKMTMVDNEYLVLGSGNMDRA 456
                 9******************985 PP

>> Regulator_TrmB  Archaeal transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.074   4.4e+02      81     137 ..     174     228 ..     170     236 .. 0.72
   2 ?   10.5   0.0   4.3e-05      0.25      15      57 ..     316     358 ..     311     374 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.074
                     S.EEEEETTTEEEEE-SSS-EEEE--HHHHHHHHHHHHHH........HHH-EEEEE CS
  Regulator_TrmB  81 apllvivDrkrgvvaprevlrdkeeeyaiifkekelihvlshyFlttlWktsevikt 137
                     +p  vivD+kr+++ + +v++++  e ++ ++ + ++ +    F  ++W+ ++  ++
      CCE27410.1 174 HPKYVIVDGKRAFIPSCNVSWEEWFEGCVEVQGDIVSSLA--AFHRNVWEAGSASYS 228
                     57789*******9999887788877777777666554444..667777888888775 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 4.3e-05
                     HHHHHHH-SSEEEEEE-GGGHHHHHHHHHHHHHTT-EEEEEES CS
  Regulator_TrmB  15 ieelIesAenelivslpselLeelreeliaaaergvtVllliy 57 
                     +  lI++A++++++ +p+     + e l +a  rgv+V +  +
      CCE27410.1 316 LLTLIANARHDITITTPNVTSWPVLEVLLEALARGVNVQIRTS 358
                     5689**********************************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3763.49
//
Query:       CCE27411.1  [L=116]
Description: uncharacterized protein CPUR_00885 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      117  (0.00652574); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 926.03
//
Query:       CCE27412.1  [L=215]
Description: uncharacterized protein CPUR_00886 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-12   46.7   0.0    5.3e-12   46.5   0.0    1.1  1  4HBT_3    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0     3e-16   5.3e-12      89     231 ..      56     213 ..      15     215 .] 0.67

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 3e-16
                 ....---EE-------.GGGE---.........--SSGGGS.GG..TEEEE-HHT---S.......S-EEEEEEEETTTS-SSHHHHHHHHTT-..... CS
      4HBT_3  89 tgwelepaaapppvpppdeaalaad........eaplplfr.rvpgflepfeprpaeggkpdspagpkrvrqWvrlreggepahlaaLaylsDsf.... 174
                 tg+e + aa++p+vp+ +  +   +          p + +r   p+++  + pr+        p  p+ ++ W+ +   g+++++aaL+y++D+f    
  CCE27412.1  56 TGYEETAAAMMPAVPDFNLFKTIGTdgvwakglL-PNNPIRkGSPEHWFMLIPRHG-------PLTPGVCDIWISAT-AGQALTQAALLYVVDAFpfel 145
                 6677666677788776433333222244443321.222222233444444555544.......33489*********.8999************94443 PP

                 -GGGGTSS-........................SB--EEEEEEEE-S--S-...EEEEEE-SEEETTEEEEEEEE CS
      4HBT_3 175 pvprvhglrld..............aea....sgwmpsldltiyfhrepaedeWllleaetpwagdgrglvearl 231
                        l ++              + +      w p++ l+ +++++   +eWl   ++t+++++gr+++ +++
  CCE27412.1 146 L-----ALLAAsryfdpvdpgeivqR-RkfryGLWLPTVLLNFEVKKSQ-GVEWLNPSITTKQIKNGRMDLAVTV 213
                 2.....33222234446766666551.1566679*************64.58******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       179  (0.00998383); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1541.18
//
Query:       CCE27413.1  [L=760]
Description: related to CLC chloride channel protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-86  290.8  16.6    1.6e-86  290.8  16.6    2.1  2  Voltage_CLC  Voltage gated chloride channel
    2.4e-05   24.7   0.1    0.00011   22.6   0.0    2.2  2  CBS          CBS domain


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.2    0.0074        66     202     281 ..      89     187 ..      71     192 .. 0.62
   2 !  290.8  16.6   1.7e-90   1.6e-86      15     353 ..     217     570 ..     209     571 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0074
                  HHHHHHHHHHHHHHHCCCSCC..CSSSSCCHHHHHCTT-S-...................HHHHHH...HHHHHHHHHHHHHCTT-CSBSHHHHHHHH CS
  Voltage_CLC 202 krlepalvgllvgllglllpa.svlgggyeliasllegstl...................llsllllllllllkllataltlgsgvpgGifaPsLviG 279
                   ++ ++++g+l++ +++++   sv     +     l++ +                     + +++ ++++++ l++ ++++g+ + +   +PsL  G
   CCE27413.1  89 GWIAAVIIGILTAGVAFVV-DvSVETVADWKEGYCLSNAWMnrrsccspdatcrnwrrwtPHFPFAYAIYVIFALVFGVIAAGVTLTTKAELPSLQAG 185
                  4677888888888888887.323444444443333333222344456667777777777634444567778888888888888888888888888888 PP

                  HH CS
  Voltage_CLC 280 Aa 281
                  A 
   CCE27413.1 186 AG 187
                  86 PP

  == domain 2  score: 290.8 bits;  conditional E-value: 1.7e-90
                  GGGSC-SHHHHHHHCTTSS--..-HHHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHH.TT.--SHHHHH.HHHHHHHHHHHHHHT-HHH CS
  Voltage_CLC  15 peaagsGipevkaalngvkgp..lslrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrl.lklsrndrdrr.lvaaGaAAGiAAaFnaPlg 108
                    aagsGipe+k++l+g+ +p  ls++vl+vk+++ +++v++G++lG+eGp+v+i+++vg ++++   k+++n+ ++r ++++++++G+++aF+aP+g
   CCE27413.1 217 YMAAGSGIPEIKTILSGFVIPhfLSFKVLAVKAVGATFAVATGMCLGKEGPFVHISTCVGYLVAKTlPKYEQNEGKMReMLSVACSSGLSVAFGAPIG 314
                  5799************************************************************775788999999999******************* PP

                  HHHHHCTTTSTSS--TTHHHHHHHHHHHHHHHHHHCTTS-S....-.T---.......--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCH CS
  Voltage_CLC 109 GvlfalEevsrefslrallpvfvasvvaalvlrlllgeepa....fgeveslf....alsllelilfvllGilgGllgalfvrlllkverlfrklekl 198
                  Gvlf+ Ee+s++f  r+l+ +f++s+vaa +lr l+ + +     f+     +    ++++ ++++f+llG++gG++g++f   + ++++ frkl  +
   CCE27413.1 315 GVLFSYEEISTYFPRRVLWKSFLCSLVAAATLRELNPTGTGklvlFE-----TnygvDYEIVHYLVFILLGVCGGVFGGVFCTANFFWSTSFRKLPLI 407
                  ***********************************666644445544.....0334479************************************866 PP

                  HHHHHHHHHHHHHHHHHHCCCSCC.CSSSSCCHHHHHCTT-S-..................HHHHHH...HHHHHHHHHHHHHCTT-CSBSHHHHHHH CS
  Voltage_CLC 199 kikkrlepalvgllvgllglllpasvlgggyeliasllegstl..................llsllllllllllkllataltlgsgvpgGifaPsLvi 278
                  k ++ le+++v+l++++l+++ p  +  +g   ++ ll ++++                  +  ++ l+  +++kl++t++t+g++vp+Gi++P L  
   CCE27413.1 408 KRSPLLEVFIVVLITACLQYPNPL-IRDTGDIMMERLLVDCNDvnedwicqqeaklsgkgtY--YAWLISGTFVKLILTTITFGCKVPSGIIIPALDA 502
                  666788*****************9.999***99999997776678889999*******9643..334578899************************* PP

                  HHHHHHHHHHHHHHH-CTSSC...HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC--GCCHHHHHHHHHHHHHHHC CS
  Voltage_CLC 279 GAalGrlvglvlalllpgaassdpgafalvGmaaflagvtrapltaiviviEltgdlelllplmlavliAkavad 353
                  GA++Gr++g+++  +       +pg+fa+vG aaflagv+r++++++vi++Eltg++++++p+m+a+l+Ak+vad
   CCE27413.1 503 GALFGRMIGQIVPDI-------SPGIFAMVGSAAFLAGVSRMTVSLAVIMFELTGEVNFIPPFMIAILTAKWVAD 570
                  **********99999.......57*************************************************98 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.93   8.3e+03      14      33 ..     618     636 ..     613     643 .. 0.71
   2 !   22.6   0.0   1.2e-08   0.00011       4      56 ..     704     757 ..     701     758 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.93
                 TTSB.HHHHHHHHHHHTSSEE CS
         CBS  14 pdtt.leealelmrekgvsrl 33 
                 p t+ + +++ ++ ++++ +l
  CCE27413.1 618 PPTSiMVKVMARL-DANH-SL 636
                 4455599999999.7774.55 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 1.2e-08
                 HSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTT.BEEEEEEHHHHHHHHH CS
         CBS   4 imtrdvvtvppdttleealelmrekgvsrlPVVdedg.klvGivtlrDllrall 56 
                 +  + +++v+  +++e a+e++ + g+s+l VVde+  k vG+v ++ ll++l 
  CCE27413.1 704 LIDSSPLCVSTGAPIEYAAEIFGKLGLSHLIVVDEETaKAVGVVGKKRLLKFLD 757
                 6667889***************8888****999888889************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5571.15
//
Query:       CCE27414.1  [L=293]
Description: uncharacterized protein CPUR_00888 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.088   12.8   0.0       0.19   11.7   0.0    1.5  1  F-box-like_2  F-box-like domain


Domain annotation for each model (and alignments):
>> F-box-like_2  F-box-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.1e-05      0.19      25      44 ..      11      30 ..       7      55 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.1e-05
  F-box-like_2 25 lPdellelifkgCkdpayep 44
                   P e+ +lif+ C+d+ ++ 
    CCE27414.1 11 FPTEIHRLIFERCYDDDLKS 30
                  59**************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2296.11
//
Query:       CCE27415.1  [L=367]
Description: related to cyclin CCL1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-35  121.2   0.0    3.7e-33  114.0   0.0    2.4  2  Cyclin_C_2  Cyclin C-terminal domain
  ------ inclusion threshold ------
      0.041   13.6   0.0      0.072   12.8   0.0    1.4  1  Cyclin_N    Cyclin, N-terminal domain
       0.62   10.7   2.6         12    6.6   0.0    3.3  4  DUF883      Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> Cyclin_C_2  Cyclin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0058        35      22      55 ..      74     106 ..      57     138 .. 0.79
   2 !  114.0   0.0   6.2e-37   3.7e-33       1     104 []     156     276 ..     156     276 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0058
  Cyclin_C_2  22 kriekaykrareilkssalltDayflytPsqIal 55 
                 + +++++++a  +l+ + ++t+ ++ y+P  +  
  CCE27415.1  74 ELPTEIRSTAAIFLR-RFYVTNSVMTYPPTELLK 106
                 5678999********.*************87655 PP

  == domain 2  score: 114.0 bits;  conditional E-value: 6.2e-37
  Cyclin_C_2   1 hPfRpLeGflldLkalgkslekriekaykrareilkssalltDayflytPsqIalaallladeklaerYleeklgkeesseks................ 83 
                 hPfRpLeG++l+L+++++++e+ri++a++rareilk+sal+tD+yf+ytPsqI++a+ll+ d +l++ +l++k  k+ +++++                
  CCE27415.1 156 HPFRPLEGAILELRKRCPDEETRINNAHARAREILKFSALVTDVYFHYTPSQIMMASLLMVDAGLVDILLSDKPAKNGAENDAkngagngaghgddqsn 254
                 9************************************************************************9885444433679999999*****99 PP

  Cyclin_C_2  84 .aksellekllktiescrkllk 104
                  a ++ +e++++t+escr++l+
  CCE27415.1 255 gAYAKARERIMTTLESCRAMLE 276
                 977789**************95 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.2e-05     0.072      35     119 ..      59     145 ..      25     152 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
                 HHH....HHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHHHHHHHHH CS
    Cyclin_N  35 idw....lvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlvyitdeafteeeilemErliL 119
                 +++    l++ a+  +l +e+  +a+ +l Rf+ ++sv  +    +  t+L+  +K e  ++ +l  l+       t ++il  E l+ 
  CCE27415.1  59 VKFftveLIRAAQFCELPTEIRSTAAIFLRRFYVTNSVMTYPPTELLKTSLFFGCKAEGFYI-RLARLAEKFP-NTTSDQILAGEYLLC 145
                 44444557888888999****************************************98863.3433333333.455677777666655 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.7     1e+04       6      19 ..      23      36 ..      21      38 .. 0.59
   2 ?   -1.2   0.0      0.53   3.1e+03      44      75 ..     176     207 ..     166     211 .. 0.75
   3 ?    6.6   0.0     0.002        12      22      49 ..     250     277 ..     246     284 .. 0.90
   4 ?    1.9   0.1     0.059   3.6e+02      27      59 ..     294     326 ..     290     329 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.7
      DUF883  6 eleslladleellk 19
                +l++l++++++l+k
  CCE27415.1 23 NLQELRHKTNALAK 36
                55666666666655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.53
      DUF883  44 rerlrdaeeavaerakeaaeaaddyVrenPwq 75 
                   r+++a  +++e  k  a  +d y +  P q
  CCE27415.1 176 ETRINNAHARAREILKFSALVTDVYFHYTPSQ 207
                 55677888888888888888999999988876 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.002
      DUF883  22 adeageeaeelRerleerlerarerlrd 49 
                  d+++  ++++Rer++ +le+ r+ l+d
  CCE27415.1 250 DDQSNGAYAKARERIMTTLESCRAMLED 277
                 689999*****************99987 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.059
      DUF883  27 eeaeelRerleerlerarerlrdaeeavaerak 59 
                 ++++ lR++l++  +  r+ l ++++a +e+a+
  CCE27415.1 294 KSMKPLRKKLQKCRDPDRADLVELQRARREQAN 326
                 567889********************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2947.99
//
Query:       CCE27416.1  [L=412]
Description: uncharacterized protein CPUR_00890 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-48  165.0   6.3    2.7e-48  164.7   6.3    1.1  1  BAR           BAR domain
    7.4e-07   28.6   3.6    1.1e-06   28.0   3.6    1.3  1  BAR_2         Bin/amphiphysin/Rvs domain for vesicular traffi
  ------ inclusion threshold ------
      0.012   15.8   0.6          7    6.9   0.1    2.3  2  NikR_C        NikR C terminal nickel binding domain
       0.63   10.3   4.8        3.8    7.8   0.1    2.4  2  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.7   6.3   6.1e-52   2.7e-48       1     238 [.       3     230 ..       3     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: 164.7 bits;  conditional E-value: 6.1e-52
         BAR   1 lkKafnRasqlleekvgkaekTkLDedFeelerrldvteklieklvkelkeylqanpgarakqivlekl.keqplelLaesmieagkelgedssfgkal 98 
                 + K+++Ra q+++ek+g + kT  +e+F++le ++ + ++ +e+l+k++++y++ +   r++ +  e++ ++ p  lL+ +m  +g ++ ++s+fg+ l
  CCE27416.1   3 FIKKIDRAVQWAGEKMGSESKTSHSEEFQRLEAEMGTRQEGMENLQKATNAYSK-WISRRCDTF--EDKgRSTPSALLGRTMASHGNDFEPESEFGHYL 98 
                 679***************************************************.9999***99..6667***************************** PP

         BAR  99 ekygeavkklaqteeelekrvetnfldplrellekefkeiqkerkklehkrlDyDaakarlkklktkkskkakdeekaeeelrkAqqkfeesneelkae 197
                  + g+a++++a   ++  ++v++n+l  +++ + + +k++q++rkkle++rl+yDa+ a+++k+k+++ +        eee+r+++ kf+ s+e++ ++
  CCE27416.1  99 ASIGRANERIANIHSNYADEVNSNWLHHVDRNV-TLMKDYQNARKKLESRRLAYDASVAKMQKAKRDDFRV-------EEEMRVSKTKFDDSSEDVMRR 189
                 *********************************.*******************************888866.......********************* PP

         BAR 198 Lpnllalevefvnqlqafveaqldfhkqaaqlleqlqqqls 238
                 +++++++e + +  l++f+eaql++h++aa+ l++++q l+
  CCE27416.1 190 MQDIQDSESDSIAALNDFLEAQLNYHERAAEELRRVRQMLA 230
                 ************************************99875 PP

>> BAR_2  Bin/amphiphysin/Rvs domain for vesicular trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   3.6   2.4e-10   1.1e-06     141     284 ..      34     226 ..      17     231 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.4e-10
       BAR_2 141 e...................................................ekdedlepLikvleqvssaykeiaeakleqDslivkefnkkLeelln 188
                 e                                                   ++ e +++  + l +++ a++ ia+   +  + + ++  +++ + + 
  CCE27416.1  34 EaemgtrqegmenlqkatnayskwisrrcdtfedkgrstpsallgrtmashgNDFEPESEFGHYLASIGRANERIANIHSNYADEVNSNWLHHVDRNVT 132
                 444555555555555555555555555555555566666666666666655544444566777777777888888877777766666666666666553 PP

       BAR_2 189 qefkkvhelrkkVeesRlkfdtlrseveekekpeteeedkklleklEDefvsateeAvvvmkeilds.sklisllklfqkaqleYfekcvkkleell 284
                   +k  ++ rkk e+ Rl +d    ++++ +k +    ++++++    +f    e+ +  m+ i ds s  i  l  f +aql+Y+e+++++l+ + 
  CCE27416.1 133 -LMKDYQNARKKLESRRLAYDASVAKMQK-AKRDDFR-VEEEMRVSKTKFDDSSEDVMRRMQDIQDSeSDSIAALNDFLEAQLNYHERAAEELRRVR 226
                 .46778899************99999977.6666655.8899**********************9863789**********************8765 PP

>> NikR_C  NikR C terminal nickel binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0016         7      15      43 ..     104     132 ..     100     134 .. 0.90
   2 ?    6.8   0.1    0.0016       7.3       8      32 ..     179     203 ..     177     207 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHSSEEEEEEEEEESSSEE CS
      NikR_C  15 lserltdiqheyhdliisslhvhldhdnc 43 
                  +er+++i+ +y d++ s+   h+d + +
  CCE27416.1 104 ANERIANIHSNYADEVNSNWLHHVDRNVT 132
                 689**********************9865 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0016
                 EETTSTTHHHHHHHHHHHHSSEEEE CS
      NikR_C   8 ydhhqrelserltdiqheyhdliis 32 
                 +d +++++++r++diq + +d+i +
  CCE27416.1 179 FDDSSEDVMRRMQDIQDSESDSIAA 203
                 79999****************9975 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1   0.00084       3.8      25      62 ..      24      61 ..       8      71 .. 0.87
   2 ?    3.3   1.5     0.022        97      39      92 ..     135     188 ..     121     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00084
                  CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC CS
  Seryl_tRNA_N 25 kadvdelleldekrrelqveleelqaerNelskeIgka 62
                  ++  +e+  l++++ + q  +e+lq+  N+ sk I++ 
    CCE27416.1 24 TSHSEEFQRLEAEMGTRQEGMENLQKATNAYSKWISRR 61
                  566789999************************99875 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.022
                   HHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  39 relqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelke 92 
                   +  q++  +l ++r +  ++++k+ k+k d  ++ +e++  k+++++ ++++  
    CCE27416.1 135 KDYQNARKKLESRRLAYDASVAKMQKAKRDDFRVEEEMRVSKTKFDDSSEDVMR 188
                   445666666777777777777777777777777777777777777777666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1476  (0.0823247); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3199.10
//
Query:       CCE27417.1  [L=447]
Description: related to laminaripentaose-producing beta-1,3-glucanase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     2e-117  392.6   0.0   2.3e-117  392.4   0.0    1.0  1  Glyco_hydro_64  Beta-1,3-glucanase


Domain annotation for each model (and alignments):
>> Glyco_hydro_64  Beta-1,3-glucanase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.4   0.0  1.3e-121  2.3e-117       3     369 .]      71     442 ..      69     442 .. 0.93

  Alignments for each domain:
  == domain 1  score: 392.4 bits;  conditional E-value: 1.3e-121
                     EEEEEEEESTTGGEEEEEEEE-TTT--.EEEE-TTS-EEE--GGGGTSTT-EEEE.EB.-ETTT-.....SEEEE-SE.EEEEEEEEESS---BE CS
  Glyco_hydro_64   3 lpltlvnntgsddvyayvtGldlatngalvlldadGtllyvpaspntaskkltpleed.iaiplgapgstktvtiPkqiasgRiyfsvgkkLkfl 96 
                     ++l++ nn +++++ ay+ Gld +  g++v++++dG+l y p++   as+++ +++++ iai+l+++g + + ++P  + sgR+yfs g +L+f 
      CCE27417.1  71 MTLEFINNFSGGQLKAYIQGLDYQ--GKIVFIRSDGSLFYPPSA--GASAIPIEISNErIAIDLPSRGGKLRTRLPIPVRSGRVYFSEG-PLRFS 160
                     78999*****************94..66************6664..58899999955559**********888888889********88.***** PP

                     EEE-TT.-.EEE---TTSTT-TTTT--EEEEEEEE..TTEEEEE---SSEE-S-EEEEEEESSS....-EEEEE-S-HHHHHHHHHHHS...-HH CS
  Glyco_hydro_64  97 lneasg.ppalvePsvtnpsDpnanvnfdfaEftyn.saglfaNisyVDfvslplgleltgasg.atqtvkglkadglakvcaalkaqaakdgaa 188
                     +++ +  +++lv+Psv+n++Dp+a++n++f+Efty+ +  ++aNisyVDfv++ l+++l+ +++ ++q +kgl+ ++++++c++l +q+  ++ +
      CCE27417.1 161 IVK-TPiGDGLVQPSVANAADPSAETNWGFVEFTYTpEGIIYANISYVDFVGMILSMSLKAKNSaSSQVTKGLRGGAVQSICNDLGRQS--PDGK 252
                     **4.44479***************************666688******************8888789999*****************96..5779 PP

                     HHTTB-......SS-EE-TTSTT-TTST..TTTTHHHHHHHHHHTTTS-EEEEETT..EEEEEEE.ETEEEE.EETTE-S---HHHHHH---S-H CS
  Glyco_hydro_64 189 wdklvvkdsdgkvlrvlsPnkgsalnea.fagYfdsyvdevwskYatedLtvdtqakaGtvtGrvsgdaltf.gdggsfakPstadifgcnsGpf 281
                     w++l+v +++gk++rvlsPn ++++n+  f++Y++ yvd+vw++Y++++Ltvdtq+ aG+v++rvsg+++ + gd++s+ kPs++di+gc+sG+f
      CCE27417.1 253 WKSLCVVNRAGKPIRVLSPNIYTVMNPRhFQDYWQGYVDRVWQQYSNNPLTVDTQGVAGKVKCRVSGSQMMCdGDNRSYGKPSAKDIWGCDSGTF 347
                     *****************************************************************99*****99999****************** PP

                     H..........HHHHHHHHHHHHHTT-TT-......GGGTTGGGTTS..SS-HHHHHHHHTBGGG----STTTTGG....G-S--EEESSEEEEE CS
  Glyco_hydro_64 282 a...tdsa...ekavqarLaAAfnRstlll.tadaqpskeeastyYkkeptNhYarlvHensvdgkgYaFaYDDvnp...dqsglvsdgnpkslt 366
                         +  +   ++av+arL+AAfnRstlll  +d qp+   as+yY+++ptN+Y+ lvH+++vdgkgYaF+YDDvnp   ++sgl++++ p+ +t
      CCE27417.1 348 GkqnN--DnnvHLAVIARLCAAFNRSTLLLaGGDVQPKLP-ASKYYSTDPTNKYSFLVHQHEVDGKGYAFSYDDVNPdgeNASGLLTTPGPEIMT 439
                     96543..2356*******************99********.*****7779********************************************* PP

                     EEE CS
  Glyco_hydro_64 367 vtv 369
                     ++v
      CCE27417.1 440 IYV 442
                     *97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3159.26
//
Query:       CCE27418.1  [L=362]
Description: uncharacterized protein CPUR_00892 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2908.85
//
Query:       CCE27419.1  [L=529]
Description: uncharacterized protein CPUR_00893 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-14   53.8   0.0    3.6e-14   52.7   0.0    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    2.8e-05   23.9   0.0    0.00019   21.2   0.0    2.0  2  DAO            FAD dependent oxidoreductase
     0.0034   17.4   0.0       0.11   12.5   0.0    2.7  2  NAD_binding_9  FAD-NAD(P)-binding
     0.0036   16.6   0.0      0.012   14.9   0.0    1.8  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0056   15.8   0.0     0.0081   15.3   0.0    1.2  1  FAD_binding_2  FAD binding domain
  ------ inclusion threshold ------
      0.013   14.7   0.0      0.024   13.9   0.0    1.4  1  Thi4           Thi4 family
      0.085   12.1   0.0       0.14   11.3   0.0    1.3  1  FAD_binding_3  FAD binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   1.4e-17   3.6e-14       1      68 []      35     110 ..      35     110 .. 0.91

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 1.4e-17
                    EE--SHHHHHHHHHHHCC...TEEEEEE-SSSSSSGGG-EECE.TT.....CEECTS---EEETTHHHHCHHHHCCC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka...gfdvlllekrdrlGGraasyev.pg.....vrvdygahifhgsgyypnvrrllrel 68 
                    +vG+Gl+Gl++AylL ++   +f+v+++ek + ++ +aas+++ +g      rvd +++ f++ gyy n+ r++++l
     CCE27419.1  35 VVGTGLAGLSTAYLLDQDkqkRFSVTVFEKTNAFSLDAASVTMlHGktgvkERVDMPPRSFCT-GYYSNLCRMYDYL 110
                    8**************98555699********************94445699************.7**********97 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.3e-08   0.00019       1      34 [.      32      70 ..      32      94 .. 0.84
   2 ?    0.2   0.0      0.18   4.5e+02     164     221 ..     294     354 ..     279     412 .. 0.61

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 7.3e-08
                EEEEECTSHHHHHHHHHHHHTT.....EEEEESSSSTTS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg.....Vtllekgdiags 34
                +v+++G G +GlstAy L + +     Vt++ek + ++ 
  CCE27419.1 32 RVAVVGTGLAGLSTAYLLDQDKqkrfsVTVFEKTNAFSL 70
                59****************766446799******987775 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.18
                 EESECEEEEEEEETCEEEEE.......EECT.EEEE..EEEEEEE--GGGHH.HHHTTCTTTSEEEEEE CS
         DAO 164 legtevtgleeedgkvwgve.......rttp.gend..aadavVnaaGawsd.llgllkeldlpispvr 221
                 +++++v +++  dgkv+  +       +    g+++   +d vV+a+ + +   +     +d p +pv 
  CCE27419.1 294 RLQARVLKVQPVDGKVVI-RwqecaegD-DGkGAIHeeVFDRVVLAMAPNVAaSI-----FD-PAQPVM 354
                 555555555444444222.234444421.22233323346889999999976433.....11.223333 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   4.1e-05      0.11       1      36 [.      34      67 ..      34      76 .. 0.85
   2 ?    1.7   0.0     0.091   2.3e+02     104     153 ..     279     338 ..     273     341 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.1e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsep 36
                   a+vG G +Gl+++  L +   k++++++t+f+++++
     CCE27419.1 34 AVVGTGLAGLSTAYLLDQD--KQKRFSVTVFEKTNA 67
                   89**********9877777..5**********9665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.091
  NAD_binding_9 104 feellarlpegvtvevhraevvdleeradgqavll......adg....aslaadaVvLAl 153
                    +++++a+l+eg++   ++a+v+++++ ++++ +++      +dg    ++  +d+VvLA+
     CCE27419.1 279 INRVQAKLSEGFKDVRLQARVLKVQPVDGKVVIRWqecaegDDGkgaiHEEVFDRVVLAM 338
                    567889999999999999999999999999766654454443332222246899999986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.5e-06     0.012       2      39 ..      32      72 ..      31     106 .. 0.86
   2 ?   -1.8   0.0      0.55   1.4e+03      62     106 ..     285     337 ..     209     339 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.5e-06
                 SEEEE--SHHHHHHHHHHHH...HTS-EEEEETTHCHHHCS CS
                 xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq...agakvtlvelegtclngg 39
                 +v+v+G G AGl++a  l q   + + vt++e+++++ ++ 
   CCE27419.1 32 RVAVVGTGLAGLSTAYLLDQdkqKRFSVTVFEKTNAFSLDA 72
                 89******************98889******8887776654 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.55
                  CHHHH.CCCCHCCTCEEEEESCEEEEETEEEC.......TCEEEEEESEEEE- CS
                  xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxx RF
  Pyr_redox_2  62 klnqg.ielllgeevvkidpgkkkvklekkke.......gdeekiaydklvlA 106
                  kl++g  +++l++ v+k+ p  +kv+++ +++       g  ++  +d++vlA
   CCE27419.1 285 KLSEGfKDVRLQARVLKVQPVDGKVVIRWQECaegddgkGAIHEEVFDRVVLA 337
                  44445344555556888888887888777777777665444445556888887 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.2e-06    0.0081       2      38 ..      33      72 ..      32      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.2e-06
                   EEEE--SHHHHHHHHHHHH..TTT.-EEEEESSSGGGSGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaae..aGl.kvavvekeqefggat 38
                   v V+G+GlAGL+ A+ + +  + + +v+v ek+++f++ +
     CCE27419.1 33 VAVVGTGLAGLSTAYLLDQdkQKRfSVTVFEKTNAFSLDA 72
                   89*************99875433469********998754 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.4e-06     0.024       8      53 ..      21      68 ..      14      87 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.4e-06
                HHHHHHHHTEEEEEEE--SHHHHHHHHHHHHC..TTS-EEEEESSSS- CS
        Thi4  8 yfedllkyaesDvvivGaGssGLtaayylakk..pdlkvailersvsp 53
                 +e+  +  ++ v++vG+G +GL++ay l ++    + v+++e+  ++
  CCE27419.1 21 QYEEASEKSVTRVAVVGTGLAGLSTAYLLDQDkqKRFSVTVFEKTNAF 68
                566667778899*****************8765578999***998766 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.6e-05      0.14       2      23 ..      31      52 ..      30      77 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.6e-05
                   EEEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLsea 23
                   t V++VG+G+aGl++a lL + 
     CCE27419.1 31 TRVAVVGTGLAGLSTAYLLDQD 52
                   78*****************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3706.95
//
Query:       CCE27420.1  [L=702]
Description: uncharacterized protein CPUR_00894 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-13   49.7   0.0    1.2e-12   47.1   0.0    2.0  2  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127


Domain annotation for each model (and alignments):
>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.012   2.2e+02      64     109 ..      93     138 ..      77     173 .. 0.79
   2 !   47.1   0.0   6.9e-17   1.2e-12     297     519 .]     327     570 ..     278     570 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.012
                      HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCHSSS-B-GCCTHH CS
  Glyco_hydro_127  64 kwleavalllastkdkelekrldrlvdelakaQqedGYlsavtelk 109
                      +w +++  ++ + k+ +l+ +++++ +++  +Q +dG++++    +
       CCE27420.1  93 YWFNSMVPMAFTLKNDALQGQVTAVARRVLDLQTPDGWIGPEELEQ 138
                      6778888899999**************************9765555 PP

  == domain 2  score: 47.1 bits;  conditional E-value: 6.9e-17
                      H--BHHHHHHHHHHHHHHHHCH--CHHHHHHHHHHHHTTGGGB-TTTS-BBSB--S.......TTTBS--SS..................SC-B CS
  Glyco_hydro_127 297 ayaEtCasinmlklarrlleltpdakyadvlEralyNsilagvsldgksffYvnpl.......esgskklrk..................lyst 365
                      + +E C++++  +    l+++ +  ++ad  Er+ +N        ++ +  Y                                          
       CCE27420.1 327 MGSELCTAVETSYSLVYLYQVLGRNDLADRAERVIFNAFPVMFTGNKWAHKYLDQPnqpwalnT-------TgedghvppvfttarsgvaTTFG 413
                      449********************************************99999876634434322.......134455679******98775555 PP

                      TTTTT-CHHHHHHHHCCGGGGGSEEEE.TTEEEE-S-SSEEEEECGCT-EEEEEEEE-TTSSSEEEEEEEETT--CEEEEEEE-TT.....-S- CS
  Glyco_hydro_127 366 kwdscaCCppnglrtvaklgeyiYaes.ddtvyvnLyiaselklklkgkeveleqetnyPwegkvkltvktqkkaeftlklRiPgW.....aaa 453
                       + + +CC  n+ +  +k+ +  + +    +v+  L ++s++ + ++g++ve++ +t yP++ +  +++  + + +f +++R+P+W     ++ 
       CCE27420.1 414 MEPQYPCCTVNHGQGYPKFLSNSWVSVgATGVAHVLLGPSQMSTVIDGSRVEIKCDTMYPFSMQFVYSI-DASNTSFDFYFRVPDWvsgyvSEV 506
                      56689*************999888887467***************************************.88999***********87777677 PP

                      EEEEETTEEE--S-STTEEEEEEEE-......-TT-EEEEEE---EEEEE--TT-CCGTTEEEEEETTEEEE CS
  Glyco_hydro_127 454 atltvnGkkvvvkkksdgYleiereW......kkgdkvelelpmsvrleeanpkvrddankvavlrGPlvla 519
                      + ++ +G+++   +++++ ++i+         + +++++++l  ++r+e+       ++++v+v +G +++a
       CCE27420.1 507 TSFSADGHAT--PTTKQTHTKIQHGLikfplgQAKHRINISLSTAIRTEAR------SNHTVSVFYGNVLYA 570
                      8999999995..334444455544321111126677777777777777766......677788888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4844.03
//
Query:       CCE27421.1  [L=565]
Description: related to allantoate permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-33  116.7  26.3    1.7e-33  116.1  26.3    1.3  1  MFS_1     Major Facilitator Superfamily
    8.5e-05   22.0   2.5    8.5e-05   22.0   2.5    2.4  2  MFS_4     Uncharacterised MFS-type transporter YbfB


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1  26.3   1.9e-37   1.7e-33       2     353 .]      89     456 ..      88     456 .. 0.80

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 1.9e-37
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 + ++fl +l+ s+lg  ++  l++d  +++ +++l+ ++  ++++v +++ ++l+ ++ +r ++ +  l+++++ + ++ ++++  l+v+r++ Gl+++
  CCE27421.1  89 VWVYFLQILDKSVLGYGATYGLKKDVDLTGNQFSLVGSIAPIAQLVWQPFSSVLIVKVPHRILMPVLCLGWGVAQASMAACHNFGSLMVARFFLGLFEA 187
                 5689******************************************************9999************55555259*99************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.....Wravfyilaivsllafvlfllllpeepperkrkspkeee...... 188
                 + +p+ ++++++w+ + e+++ i+ ++++++l++i++++++  l +  +     W+ +f++++++++++  ++++ l +++++++r+ ++ e+      
  CCE27421.1 188 GCLPLFGVITSQWYRRAEQPMRIAAWYGTNGLATIVAAAISYGLGHIQSevlkeWQIIFLFVGLMTIISTPFVYWKL-DNDVASARFLTEHEKaqaier 285
                 *********************************************66669*******************88655555.666666666666665588877 PP

       MFS_1 189 .......kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdrlgrrrr 276
                         g  +++++ + +a+l ++   +++ ++l+  +  s + t+ pl+  + l  +    +ll +   ++++++v+++la ++++ ++       
  CCE27421.1 286 lranqtgTGSREFKWSHLVEAVLEPKTY-LWIGMALCLNALASVTNTFGPLI-ISGLVTDkftsTLLNIP--FGVVQVVVIVLACFLAQKARI-----K 375
                 7766555444444444455555555533.47777777777899999999996.44444443323355555..777777777776666666644.....4 PP

       MFS_1 277 lllallllllaalglallavt....ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                   +  l++l +++gla+l       + ++ ll++++l+ f +g +  +++ ++ + a++ ++  a+g++n a s+g ++gp
  CCE27421.1 376 GAILALFMLPVVAGLAVLYSVrrgpDAQAPLLVGYYLLAFMYGGIPLIVTWIVGNTAGTTKQSIAMGVYNAATSVGNIIGP 456
                 4555555555555555555555556899999999***********999999*****************************8 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   2.5   9.5e-09   8.5e-05      23     183 ..     114     275 ..     109     290 .. 0.80
   2 ?   -1.1   9.9     0.098   8.7e+02     217     335 ..     340     460 ..     311     490 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 9.5e-09
       MFS_4  23 gqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrervgal 121
                 + l+ +q +l++++  +  Lv   + ++   + ++R+ + +  l   ++ + ma+ ++f  ++++Rf +G+  A  l + + +  +    a+++  +a+
  CCE27421.1 114 VDLTGNQFSLVGSIAPIAQLVWQPFSSVLIVKVPHRILMPVLCLGWGVAQASMAACHNFGSLMVARFFLGLFEAGCLPLFGVITSQWYRRAEQPMRIAA 212
                 55666666666666666666666666666777788888878888888999**********************************9999*********** PP

       MFS_4 122 lfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllp.raalreasaaaea 183
                  ++  Gl  +v++ + + l + + +    W+++ ++  ++++++++ +  +  +  asa +  
  CCE27421.1 213 WYGTNGLATIVAAAISYGLGHIQSEVLKEWQIIFLFVGLMTIISTPFVYwKLDNDVASARFLT 275
                 ******************99999999999**************99988744444444444433 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.098
       MFS_4 217 iardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllslls..psplglivssvllGltflaitalvlqlarelappat. 312
                 ++ d++ + ll+  + ++  + +++++++ +++  + g+  al +  ++ +++vl s+    ++ + l+v+  ll  ++ +i  +v+ ++ + a+ ++ 
  CCE27421.1 340 LVTDKFTSTLLNIPFGVVQVVVIVLACFLAQKARIK-GAILALFMLPVVAGLAVLYSVRRgpDAQAPLLVGYYLLAFMYGGIPLIVTWIVGNTAGTTKq 437
                 455556666666666666666677777777666544.66666667777888888888875224566788888888888888888888888888887774 PP

       MFS_4 313 rrllglmTasfgigQilGpllas 335
                   ++g+  a+  +g i+Gpll+ 
  CCE27421.1 438 SIAMGVYNAATSVGNIIGPLLFD 460
                 56789999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4002.49
//
Query:       CCE27422.1  [L=732]
Description: related to 3-oxoacyl-[acyl-carrier-protein] reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0019   17.3   0.2      0.006   15.7   0.0    1.9  2  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.3e-07     0.006       2     172 ..     206     368 ..     205     371 .. 0.75
   2 ?   -2.5   0.1      0.11     2e+03     219     248 ..     404     433 ..     401     451 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.3e-07
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                    r+ + fhp fp+ h   f +     +  + a+++p+ll+ail +++  ++++t +  +++ s    +i  +l+  i+        s+ + ++++Ll
    CCE27422.1 206 RRYHEKFHPFFPVAHCKLFESGC---SVLEWAEKEPHLLTAILTVAS--KDDPTWFRVYDACS---RHIENFLSTLIYA------GSTAIGSVEALL 288
                   68889999999999998888888...66677799*********9996..55555555555555...4699999999999......7777*****998 PP

  Fungal_trans  99 llelyektss..........dralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrR.lwwaaFylDktialklGr 172
                   +l+ +   +           +  ++++++g+a+rl +  +L +      +    +l+     sr+R +w a+++ D+++++ lG 
    CCE27422.1 289 ILAEWAPQRPqensaigcgqEDHGAWMLVGMAIRLGYLQRLEQAALVPDD---GNLSQV--MSRKRvVWAACYMSDRQVSIRLGK 368
                   887666555534444555444555666**************988877774...355555..4555515668**********9995 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.11
  Fungal_trans 219 sfllaLkkilskiagsllsiekqlqqrdlq 248
                   +++l L +++s+ ++ l+s  ++ +q +  
    CCE27422.1 404 QAHLELTQLISNAHDILYSSTSHRKQLYIG 433
                   6789999*****999999999988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 5453.25
//
Query:       CCE27423.1  [L=336]
Description: uncharacterized protein CPUR_00897 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-50  169.7   0.0    5.7e-50  169.1   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      9e-19   67.5   0.0    1.2e-18   67.1   0.0    1.2  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    4.3e-05   23.7   0.0    7.8e-05   22.9   0.0    1.4  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
  ------ inclusion threshold ------
      0.017   14.4   0.0      0.031   13.6   0.0    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   0.0   1.3e-53   5.7e-50       2     178 .]     124     301 ..     123     301 .. 0.95

  Alignments for each domain:
  == domain 1  score: 169.1 bits;  conditional E-value: 1.3e-53
                   HHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH..CHHHHTC.EECSHHHHHHH-SEE CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee..eeeelgv.elvsleellaesDiv 95 
                    l+l +lrr    ++++reg+w + ++ lg++ ++ t+Gi+G+G IG+a+akr++a+g+k+ +++r++ ++   +++++ + ++vs+++ll++sD++
    CCE27423.1 124 FLILGALRRAWIPQTALREGKW-RGASPLGRDPHHLTLGILGMGGIGTATAKRAAALGFKLQYHNRKPVADLdsQFSTQAApRYVSFDDLLKTSDVI 219
                   68999*****************.999*****************************************9976666566656679************** PP

                   EE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  96 slhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   s+hlpl p+t+++i+++el++mk+g+i++NtaRG+++de+aL+e L+sgk+  ++lDvfe+ep  e  +l++ p  +l PHi+
    CCE27423.1 220 SVHLPLGPATKGFIGKKELSAMKDGVIIVNTARGAIIDEAALAESLDSGKVWSVGLDVFENEPEIEP-RLIKNPAAMLLPHIG 301
                   ****************************************************************977.*************98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   2.6e-22   1.2e-18      41     133 ..      52     332 ..       9     333 .. 0.91

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 2.6e-22
                 SEEEE-TTS........-BSHHHHHHH.TT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH............................ CS
                 xxxxxxxxx........xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................ RF
  2-Hacid_dh  41 dalivrsnt........kvtaevleal.pkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt............................ 102
                 d ++   +t        +++ae+++++ p+++++++ g+G+D++D++ +++rGi V+n+p++   ++A ++                            
  CCE27423.1  52 DNVVAILRTfdsvqitgRFDAELISHFpPSIRFVCHDGAGYDQIDIEPCTARGISVSNTPKAVDAATANTAiflilgalrrawipqtalregkwrgasp 150
                 4333333333344444578******************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  CCE27423.1 151 lgrdphhltlgilgmggigtatakraaalgfklqyhnrkpvadldsqfstqaapryvsfddllktsdvisvhlplgpatkgfigkkelsamkdgviivn 249
                 *************************************************************************************************** PP

                 ....................................................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBC CS
                 ....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ....................................................aaTeeaqeniaeeaaenlvaflkgespanav 133
                                                                      aT ++q+++   a++n++ +++++++ + v
  CCE27423.1 250 targaiideaalaesldsgkvwsvgldvfenepeieprliknpaamllphigTATADTQKEMEILAIDNVKGAIANGTLLTQV 332
                 ****************************************************************************9998876 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.7e-08   7.8e-05       2     113 ..     160     274 ..     159     279 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.7e-08
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSH.HHHH.HHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---H CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtk.ekve.elvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstssp 94 
                    +g++G+G +G+  a++ ++ g+k+  +nr++ + ++ ++ ++ a  + s  +l+++ dv+ + ++ g+a++ +i +  l+a+k g i+++++  ++
     CCE27423.1 160 LGILGMGGIGTATAKRAAALGFKLQYHNRKPvADLDsQFSTQAAPRYVSFDDLLKTSDVISVHLPLGPATKGFIGKkELSAMKDGVIIVNTARGAI 255
                    79***************************97444441555666888999*************************9988899**********99999 PP

                    HHHHHHHHHHHHTT-EEEE CS
  NAD_binding_2  95 edtrelakelkekglkfld 113
                     d   la+ l + ++  ++
     CCE27423.1 256 IDEAALAESLDSGKVWSVG 274
                    9999999999887776665 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.9e-06     0.031      33     128 ..     162     251 ..     153     266 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.9e-06
                  EESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE---BTTSS---.SC-HHHHHTS-TTEEEEETT CS
  AlaDh_PNT_C  33 viGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtvlipGkkaPk.LvteemvksMkpgsVivDvA 128
                  ++G G  G++ ++ a++lg k +      + ++ + +l ++f +  +    ++++ +k++dv+  +v++p  +a k  + ++ +++Mk+g +iv  A
   CCE27423.1 162 ILGMGGIGTATAKRAAALGFKLQY-----HNRKPVADLDSQFSTQAAPRYVSFDDLLKTSDVI--SVHLPLGPATKgFIGKKELSAMKDGVIIVNTA 251
                  666666777777777777666555.....556667888888777788889999********86..677776666666****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2390.26
//
Query:       CCE27424.1  [L=284]
Description: related to 3-oxoacyl-[acyl-carrier-protein] reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-42  143.2   0.1    8.5e-42  142.8   0.1    1.1  1  adh_short       short chain dehydrogenase
    6.4e-37  127.3   0.8    4.7e-36  124.5   0.8    1.9  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    2.6e-05   23.8   0.0    7.3e-05   22.3   0.0    1.8  1  Epimerase       NAD dependent epimerase/dehydratase family
    8.9e-05   22.5   0.3    0.00013   21.9   0.3    1.3  1  KR              KR domain
    0.00024   21.1   0.4     0.0026   17.7   0.4    2.1  1  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
      0.012   15.1   0.0      0.016   14.6   0.0    1.2  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   0.1   2.8e-45   8.5e-42       2     187 ..      22     218 ..      21     225 .. 0.92

  Alignments for each domain:
  == domain 1  score: 142.8 bits;  conditional E-value: 2.8e-45
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHH......HHHHHHSSESEEEE---S.S-- CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee..gakalaiqvDvtdreevealve......kavkklgkldvLvnNAGi.tgs 90 
                  +lvtGas+GIG a++kela+eG++v++ ++ +++k++ +a+ l+     + ++++q+D+ dre+++ +v       ++++k++ l vLv+NAGi  + 
  CCE27424.1  22 LALVTGASGGIGAACVKELAREGCDVALhYSTNKQKAASLAAYLRGIypTQLFVIVQADLGDRESTRCFVPsilampEVAAKHEALSVLVANAGIgRRI 120
                 59*********************************************9777899************98765111111667889************8778 PP

                 SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS.SHHH CS
   adh_short  91 gpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd.Tdma 187
                 ++ +++ e+ w++++evN+ + f +t+a+l+ m kq++Gr++ ++S+a++ + ++++ Y+AsK+a++++  +la  +a+++++vn+vaP+++  T+m 
  CCE27424.1 121 RDPHDIGEDSWDEMMEVNIRSQFVVTKACLEGMRKQRWGRVILMGSIAARGGGINGCHYAASKGALRSMGLNLASVVAEDSVTVNIVAPAMIGeTGMI 218
                 899999**************************************************************************************989885 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.8   1.6e-39   4.7e-36       1     233 [.      27     283 ..      27     284 .] 0.82

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 1.6e-39
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTT.SE..E.EE--TTSHHHHHHHH......HHHHHHHSSEEEEEE-----EGCSS- CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelg.ae..v.lecDVtdeeqvealv......eevvekfgklDilvnnagiapklkgp 86 
                   Ga  gIG+a++k+la+eG++v+l++  +++ ++++++  + +  ++  v +++D  d+e+ + +v       ev++k++ l +lv nagi ++   +
    CCE27424.1  27 GASGGIGAACVKELAREGCDVALHYSTNKQkAASLAAYLRGIYpTQlfViVQADLGDRESTRCFVpsilamPEVAAKHEALSVLVANAGIGRR-IRD 122
                   8999**********************999965555555555443666538**********9986622222257899*****************.788 PP

                   GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--B.HCTG.. CS
  adh_short_C2  87 fletsreefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpi.kTla.. 178
                    +++ ++++d++++vn++s f ++ka+l+ m+++  g+++ + s++a+ +  n  +y+a+K+al ++  +lA  ++++ ++vN v+p +i +T +  
    CCE27424.1 123 PHDIGEDSWDEMMEVNIRSQFVVTKACLEGMRKQrwGRVILMGSIAARGGGINGCHYAASKGALRSMGLNLASVVAEDSVTVNIVAPAMIgETGMip 219
                   8****************************7777779**************************************************97774455532 PP

                   ...GGGSTTHHHHHH........HHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 179 ...asgikgfdelle........elearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                       +  +++ +l++         ++a +p++rlgtp eva+++l++a   + yitGq+l + gGl
    CCE27424.1 220 eplEQTWDSNTDLEAlsrtdpglSIAAGIPVRRLGTPCEVANVVLMFAK--TGYITGQELLISGGL 283
                   2214444444444441122222246789******************998..56************7 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.4e-08   7.3e-05       1      61 [.      23      92 ..      23     175 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.4e-08
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfk 61
                +lVtGa+G iG+a vk+l+++g +v    + +++++ ++ + l          +v++dl dr++++ ++ 
  CCE27424.1 23 ALVTGASGGIGAACVKELAREGCDVALHYSTNKQKAASLAAYLrgiyptqlfVIVQADLGDRESTRCFVP 92
                59********************99998888877777666666699*******999******997665553 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.3   4.5e-08   0.00013       4     155 ..      24     185 ..      22     208 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.5e-08
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHH......HHHHHHHSS---EEEE------.-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdaveal......leeikaeeppikGvihaAgvlr.dk 95 
                 l+tG+ Gg+G + ++ la++g    +  s ++++ ++ +a ++ +  ++    +v+aD+ d+++ +        + e+ a++++++  +  Ag+ r  +
  CCE27424.1  24 LVTGASGGIGAACVKELAREGCDVALHYSTNKQKAASLAAYLRGIYPTQLF-VIVQADLGDRESTRCFvpsilaMPEVAAKHEALSVLVANAGIGRrIR 121
                 9********************988888888867667767777777776665.57789*******99872222224566677799**********98357 PP

                 -TTT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHH CS
          KR  96 lleemtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaf 155
                    +  +++++++++  ++   ++ +++ +    ++   ++l+ Sia+  g    ++Yaa    
  CCE27424.1 122 DPHDIGEDSWDEMMEVNIRSQFVVTKACLEgmrkQRWGRVILMGSIAARGGGINGCHYAASKGA 185
                 88999*******************999988776688899*******************998665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.4   8.7e-07    0.0026       1     108 [.      27     173 ..      27     234 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 8.7e-07
                     TTTSHHHHHHHHHHHHC-T-EEEEE.ETTHHHCHHHH.......CTTTCEEEE--TT-CCHHHHHHT.............T-SEEEES---TCC. CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtal.vRnpeklaele.......aeeglevvegdvtdvedlaealk.............gadaVvsalggggk. 73 
                     GA+G++G + vkel+++g  +v +    n++k+a+l+        ++   +v++d+ d e+ +  +                ++ v+++g g++ 
      CCE27424.1  27 GASGGIGAACVKELAREG-CDVALHySTNKQKAASLAaylrgiyPTQLFVIVQADLGDRESTRCFVPsilampevaakheALSVLVANAGIGRRi 120
                     9****************6.8887762456778775553333332234456788888888776666653334444444221333444444555555 PP

                     ...HHHH....................HHHHHHHHHHCT--EEEEEEETTTTSGCGCH CS
  NAD_binding_10  74 ...deeg....................aknivdaakeagvkRfvlvsaigvgdevpge 108
                                                +k++++ ++++   R++l+++i ++    g 
      CCE27424.1 121 rdpH--DigedswdemmevnirsqfvvTKACLEGMRKQRWGRVILMGSIAARG---GG 173
                     5440..1456666777788999999***********************99974...44 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.5e-06     0.016       1      67 [.      24      87 ..      24      96 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.5e-06
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHH CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDsssl 67
                   L+TG +G iG+  ++ L ++g +v      +++ + +++++  +      ++ + ++++Dl D++s 
     CCE27424.1 24 LVTGASGGIGAACVKELAREGCDVALHYSTNKQKA-ASLAAYLRG--IYPTQLFVIVQADLGDREST 87
                   9***********************87665555544.444444332..34456799********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2203.27
//
Query:       CCE27425.1  [L=281]
Description: uncharacterized protein CPUR_00899 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2142.90
//
Query:       CCE27426.1  [L=351]
Description: probable lactonohydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-24   87.0   0.0    2.9e-24   86.0   0.0    1.5  2  SGL             SMP-30/Gluconolactonase/LRE-like region
    1.2e-05   25.4   0.0    6.5e-05   23.0   0.0    2.2  1  Str_synth       Strictosidine synthase
    2.9e-05   24.2   0.0    7.9e-05   22.8   0.0    1.7  1  Arylesterase    Arylesterase
    5.7e-05   22.9   0.3     0.0082   16.1   0.0    3.0  2  NHL             NHL repeat
  ------ inclusion threshold ------
      0.073   12.8   0.2        3.9    7.2   0.0    2.6  2  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.92   3.3e+03      43      59 ..      58      73 ..      47      97 .. 0.68
   2 !   86.0   0.0     8e-28   2.9e-24      71     236 ..     162     323 ..     103     331 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.92
         SGL 43 vGaiaprkdgrlvvask 59
                +G+++p +d++l v+s+
  CCE27426.1 58 AGVFIP-QDNTLFVTSN 73
                555555.4444444443 PP

  == domain 2  score: 86.0 bits;  conditional E-value: 8e-28
         SGL  71 eletladeeedekpllrfNDgvvd.pdGrlwfGtmgdeeakgeev.....galyrldpd.gklervlddltipNGlawspdgktlYlaDsltrkiwayd 162
                 + ++++++  ++ p  ++ND+vv+ +dG++wf+++ ++ ++g ++      ++yr++p+  ++++v+d+++ pNG+a+spdg+ lY++D+++++   + 
  CCE27426.1 162 KSRYMLQSYMNR-PFSSPNDLVVHhRDGSIWFTDPIYGFEQGFRPrprlpSQVYRFEPRtRSVRVVADGFGRPNGIAFSPDGRVLYVTDTHRFHGDGVV 259
                 445555555466.99*****9996379************99999999************999*****************************99866553 PP

         SGL 163 vdaeggklsnrrvfadlkkgegepDGlavDaeGnvwvAvwgggkvvrfdpdGklieeiklpakrvtscaFgGpd 236
                  d   +     rvfa  + g   pDG+ +D  Gnv++   +g++++ ++p G+l+++i +    v++ +Fg   
  CCE27426.1 260 DD---THPATMRVFAMADAGV--PDGIKCDVYGNVYSG--SGDGISIWSPGGTLLGKILVS-GGVANFCFG--R 323
                 33...33568999*8888886..***************..99*****************99.99******8..3 PP

>> Str_synth  Strictosidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.8e-08   6.5e-05      38      76 ..     212     250 ..     179     254 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.8e-08
   Str_synth  38 rllkydkstkvvkvlldkLyfanGialsedgsfvlvcet 76 
                 +++++++ t++v+v++d    +nGia s+dg  + v++t
  CCE27426.1 212 QVYRFEPRTRSVRVVADGFGRPNGIAFSPDGRVLYVTDT 250
                 79******************************9988876 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.2e-08   7.9e-05      36      74 ..     211     251 ..     207     254 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.2e-08
  Arylesterase  36 tavvYysps..evkvvasglssanGInidadkkyiyvadil 74 
                   ++v+ ++p    v+vva+g+  +nGI +++d +++yv+d  
    CCE27426.1 211 SQVYRFEPRtrSVRVVADGFGRPNGIAFSPDGRVLYVTDTH 251
                   667777775226999***********************975 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.018        64       1      18 [.     175     193 ..     175     198 .. 0.89
   2 !   16.1   0.0   2.3e-06    0.0082       1      23 [.     230     253 ..     230     254 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.018
                 BSSEEEEEEE.TTTEEEEE CS
         NHL   1 fnyPhGvavd.snGdiyVa 18 
                 f++P++++v   +G i+ +
  CCE27426.1 175 FSSPNDLVVHhRDGSIWFT 193
                 899************9955 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.3e-06
                 BSSEEEEEEE.TTTEEEEEECCCT CS
         NHL   1 fnyPhGvavd.snGdiyVaDsenh 23 
                 f +P+G+a + ++  +yV+D++++
  CCE27426.1 230 FGRPNGIAFSpDGRVLYVTDTHRF 253
                 899*******999999*****987 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0011       3.9       8      14 ..     238     244 ..     236     245 .. 0.88
   2 ?    2.8   0.1     0.026        94       5      14 ..     297     306 ..     296     307 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0011
  Proteasome_A_N   8 FSPdGRL 14 
                     FSPdGR+
      CCE27426.1 238 FSPDGRV 244
                     ******8 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.026
  Proteasome_A_N   5 lttFSPdGRL 14 
                     ++++SP G L
      CCE27426.1 297 ISIWSPGGTL 306
                     89*****977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2759.04
//
Query:       CCE27427.1  [L=535]
Description: related to polyamine oxidase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-62  210.5   0.1    1.1e-60  206.2   0.1    2.0  1  Amino_oxidase  Flavin containing amine oxidoreductase
    3.6e-10   39.9   0.1    1.1e-09   38.4   0.1    1.9  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.002   17.8   3.5       0.11   12.0   0.4    3.3  3  DAO            FAD dependent oxidoreductase
      0.004   17.7   0.5       0.21   12.2   0.1    2.8  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0074   15.6   0.2      0.028   13.7   0.2    1.9  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0087   15.4   0.4      0.017   14.5   0.4    1.5  1  FAD_oxidored   FAD dependent oxidoreductase
     0.0089   15.3   0.0      0.082   12.1   0.2    2.0  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.019   14.0   0.2       0.03   13.4   0.2    1.3  1  FAD_binding_2  FAD binding domain
      0.067   12.4   1.0      0.084   12.1   0.1    1.6  2  Thi4           Thi4 family
       0.14   11.4   0.1       0.28   10.4   0.1    1.5  1  FAD_binding_3  FAD binding domain


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.2   0.1   6.4e-64   1.1e-60       1     448 [.      46     479 ..      46     483 .. 0.85

  Alignments for each domain:
  == domain 1  score: 206.2 bits;  conditional E-value: 6.4e-64
                    HHHHHHHHHHHHTT.EEEEEEESSSSSBTTS-EEEET....T..EEEESS--EEET......TTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTE CS
  Amino_oxidase   1 laGLaaArqLlsaG.fdVtvlEardrvGGRirtvrsd....G..ylielGamwftg......agnpllellkelgledslslpdpgapkrvlskgg 83 
                    +aG++aA+ L +    d++++E +dr+GGR+   +++    G  + +elGa+w++g       +np++ l++++gl++s s  +++   ++ ++g 
     CCE27427.1  46 MAGITAAQALRNESiTDFIIIEYNDRIGGRATHAPFGkqgdGspWAVELGANWIQGlgnpsgPQNPVWLLAQKHGLKNSNS--NYSSILTYNETG- 138
                    8************************************996548899*******************************9887..666455555544. PP

                    ECCTTEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTST CS
  Amino_oxidase  84 refpgdlspvpaewealleqgalsaellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagd 179
                       ++d++++  e+ +  +           +++ ++g+ +         +l++++  + l+ l++ +p + ++ ++ +e       + +    a+ 
     CCE27427.1 139 ---HTDYHELILEYSKAWD-----------QASAKAGRMLAE-------NLQDETARTGLA-LAGWNPKHSDMKRQAVEW------WSWDWEAARS 206
                    ...4555555555555555...........555566666666.......445555555544.444444444778888883......2222223334 PP

                    T.TTCBHHHHTCCCCHHHHHTSCCCEE..TTHTHHHHHHHHH...TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HHHHH..S CS
  Amino_oxidase 180 p.selsaklalpllwelegfggslllp..rgGlsqlpealae...elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplgvlk..a 267
                    p ++++   a  +++ +++fg++  l+   +G++ ++e  a+   +  + +++l t  ++i++++ gvtv+ +dg+ v+a + ++T +lgvl+  a
     CCE27427.1 207 PeDSSLIFGAAGDNLTFNQFGDENNLLidPRGYRHIIEKEAQtflQPNDPRLLLKTSITNITYSDAGVTVHNSDGSCVSAAYAICTFSLGVLQsqA 302
                    4577777778888888888887766666899***********99999999********************************************** PP

                    SEEESCCSHHHHHHHHHSEEEEEEEEEEEESSGGSGCSTSECECECCCEEETTTEEEEECC.ECCCSTTTEEEEEEEEECHHHHHHHTTS-HHHHH CS
  Amino_oxidase 268 ilfsPplpdekaeairnlgfgsvnkvilefdrkfwednalgqgvlvseltttlgeafissd.fpsrappgkglvllvyvggdaaneleslsdeelv 362
                    i f+Pplp++k+ +i ++ +g+ +k++++f   fw+   ++    +  ++t +g+  ++++   +   pg+++ ++++v++d+  +le+ +de+ +
     CCE27427.1 303 IGFEPPLPEWKRTSISKFSMGTYTKLFMQFNHTFWPADTQY---FLYASPTKRGYFPVWQSlSADGFLPGSNI-IFATVVDDESYRLEQQTDEQTK 394
                    *************************************7654...89999999999999*99977777888888.******9999999********* PP

                    HHHHHHHHHHHT.GTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHH CS
  Amino_oxidase 363 qavlrdLrklfg.eevpepkatlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGehtsreypgtvegAilSGlraA 448
                    ++ l +Lr++f+  +vpep a+   rW+++p+a+gsys ++ g+  e+ ++l+++   +rl fAGe+ts ey+g ++gA+  G+ a 
     CCE27427.1 395 AEMLAVLRQMFPnVAVPEPTAFMYPRWTKKPWAYGSYSNWPIGTTLEMHQNLRAN--TGRLWFAGEATSAEYFGFLHGAWFEGKDAG 479
                    ********************************************99999999999..************************999885 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.1   6.1e-13   1.1e-09       1      56 [.      41     103 ..      41     118 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 6.1e-13
                    EE--SHHHHHHHHHHHCCTE.EEEEE-SSSSSSGGG-EECE..TT....CEECTS---EEETT CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagf.dvlllekrdrlGGraasyev..pg....vrvdygahifhgsg 56 
                    I+G+G++G +aA++L+++ + d  ++e +dr+GGra+ + +  +g     +v++ga+++ g g
     CCE27427.1  41 ILGGGMAGITAAQALRNESItDFIIIEYNDRIGGRATHAPFgkQGdgspWAVELGANWIQGLG 103
                    89****************8879*******************7722569***********9984 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.4   6.2e-05      0.11       2      41 ..      39      81 ..      38      91 .. 0.87
   2 ?    4.0   0.0     0.018        32     199     299 ..     321     408 ..     320     440 .. 0.66
   3 ?   -0.8   0.0      0.51   9.1e+02      32     311 ..     456     503 ..     414     526 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.2e-05
                EEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTSSGGGSSE CS
         DAO  2 vviiGGGiiGlstAyeLarrg...VtllekgdiagsgaSgrns 41
                v+i GGG++G+++A +L  +     +++e +d++g  a+++  
  CCE27427.1 39 VAILGGGMAGITAAQALRNESitdFIIIEYNDRIGGRATHAPF 81
                99***************544488999*****999988888765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.018
                 --GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSE.EETTCSSTSCSHHHHHHHHHHHHHHS CS
         DAO 199 aaGawsdllgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtad.eesgdddpevdeedidellealrklf 296
                 ++G +++l+    ++++ + p+  q++ ++ +++     +  +pv   +  ++g  ++p  + ++++ +  d e ++ + +++de+  +e+l  lr++f
  CCE27427.1 321 SMGTYTKLF---MQFNHTFWPADTQYFLYASPTK-----RGYFPVW-QSLSADG--FLP--GSNIIFATVVDdESYRLE-QQTDEQTKAEMLAVLRQMF 405
                 577777766...4455666788888888855443.....2445553.3333333..556..345888887764444444.6****************** PP

                 GGG CS
         DAO 297 Pql 299
                 P++
  CCE27427.1 406 PNV 408
                 *95 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.51
                 TTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTT CS
         DAO  32 agsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeelealdkllallleagldaelldaeevrelepalpg 130
                 ag+++S    g+lh+++ + ++                                                                             
  CCE27427.1 456 AGEATSAEYFGFLHGAWFEGKD----------------------------------------------------------------------------- 477
                 3333444444444444432222............................................................................. PP

                 TSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEE CS
         DAO 131 llgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsdllgllkeldlpispvrgqvlvlkp 229
                                                                                                                    
  CCE27427.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

                 CCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGGCGEEEEEEEEEE CS
         DAO 230 lseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidellealrklfPqlgdvlrkwaGlrp 311
                                                                       +  ++ + l+ ++Pq+   +++++G+rp
  CCE27427.1 478 ------------------------------------------------------AGSQIASLLSGRCPQK--HKSTQCGMRP 503
                 ......................................................2223555555555552..2345566666 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00012      0.21       2      36 ..      39      75 ..      38      83 .. 0.87
   2 ?    2.5   0.0      0.12   2.1e+02      40      78 ..     241     276 ..     228     281 .. 0.80
   3 ?   -2.3   0.0       3.7   6.7e+03      26      53 ..     376     404 ..     375     410 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
                EEEECSSHHHHHHHHHHHHTT.SEEEEEESSSSSS.T CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg.kkVtvversdkll.r 36
                v+++GgG  g+ +A+al++    +  ++e +d++  r
  CCE27427.1 39 VAILGGGMAGITAAQALRNESiTDFIIIEYNDRIGgR 75
                89***************9977589********99844 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  40 eeaskilqeklekngievllntkveeiegsedgvesvkl 78 
                 + ++k+ q+ l+ n  ++ll+t++++i+ s+ g   v++
  CCE27427.1 241 HIIEKEAQTFLQPNDPRLLLKTSITNITYSDAG---VTV 276
                 5678899999999999***************99...554 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.7
                 EEEESSSSSS.TTSSHHHHHHHHHHHHHT CS
   Pyr_redox  26 tvversdkll.rllDeeaskilqeklekn 53 
                 tvv+ ++  l ++ De++ +++   l+++
  CCE27427.1 376 TVVDDESYRLeQQTDEQTKAEMLAVLRQM 404
                 78888888888999999999998888876 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   1.5e-05     0.028       2      31 ..      41      71 ..      40      80 .. 0.89
   2 ?   -2.0   0.0      0.92   1.6e+03     228     256 ..     257     285 ..     240     300 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkg.n 31
                 I G+G aG++aa +l++  ++d++i+E + +
   CCE27427.1 41 ILGGGMAGITAAQALRNESITDFIIIEYNdR 71
                 99*************************7745 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.92
  Pyr_redox_3 228 kvlfnaevkeikekeeeykvktedgkkve 256
                  ++l ++++++i+ ++  ++v+ +dg+ v+
   CCE27427.1 257 RLLLKTSITNITYSDAGVTVHNSDGSCVS 285
                  55667788888888888888888876554 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.4   9.7e-06     0.017       2      41 ..      39      79 ..      38     102 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.7e-06
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGa..kvlLveergvlGGlltsg 41
                  v + GGg+aG++AA +A r+      +++e ++++GG +t +
    CCE27427.1 39 VAILGGGMAGITAA-QALRNESitDFIIIEYNDRIGGRATHA 79
                  89**********99.677777633669************986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   4.6e-05     0.082       2      23 ..      38      59 ..      37      84 .. 0.77
   2 ?    0.3   0.0      0.18   3.2e+02     179     237 ..     237     297 ..     223     306 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.6e-05
                 SEEEE--SHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqag 23
                  v+++GgG+AG++aa+ l++ +
   CCE27427.1 38 TVAILGGGMAGITAAQALRNES 59
                 69****************9953 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.18
                  TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCE..EEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx RF
  Pyr_redox_2 179 raldkelsaaleealekeGvevklgtsvkeidgngeklevvledgee..idadlvvvavGv 237
                  r++ + ++++++  l+ ++ ++ l+ts+++i+  +  ++v+++dg+    ++  + ++ Gv
   CCE27427.1 237 RGYRHIIEKEAQTFLQPNDPRLLLKTSITNITYSDAGVTVHNSDGSCvsAAYAICTFSLGV 297
                  667788999999999999999***********9999999**99999833444444555555 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   1.7e-05      0.03       2      42 ..      39      81 ..      38      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.7e-05
                   EEEE--SHHHHHHHHHHHHTTT.-EEEEESSSGGGS.GGGG-- CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGl.kvavvekeqefgg.atawsq 42
                   v + G+G+AG +AA +++++   + +++e  ++ gg at++ +
     CCE27427.1 39 VAILGGGMAGITAAQALRNESItDFIIIEYNDRIGGrATHAPF 81
                   89*******************99************97777655 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.7e-05     0.084       4      55 ..      23      74 ..      20      79 .. 0.87
   2 ?   -3.5   0.1       2.7   4.9e+03      13      37 ..     267     291 ..     259     296 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.7e-05
                HHHHHHHHHHHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4  4 iveryfedllkyaesDvvivGaGssGLtaayylakkpdlkvailersvspGG 55
                +v+++ +d  +  ++ v+i G+G +G+taa+ l ++     +i+e +  +GG
  CCE27427.1 23 VVRSAAKDDASCKKTTVAILGGGMAGITAAQALRNESITDFIIIEYNDRIGG 74
                678888888899999********************98888999999988888 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.7
                 HHHTEEEEEEE--SHHHHHHHHHHH CS
        Thi4  13 lkyaesDvvivGaGssGLtaayyla 37 
                 ++y ++ v +  +  s ++aay + 
  CCE27427.1 267 ITYSDAGVTVHNSDGSCVSAAYAIC 291
                 5678888888888889999999886 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00016      0.28       1      33 [.      36      68 ..      36      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00016
                   EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrvvlvekr 33
                   +t+V+I G+G aG+++a+ L++  +   ++  +
     CCE27427.1 36 KTTVAILGGGMAGITAAQALRNESITDFIIIEY 68
                   689******************998886666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.37
# Mc/sec: 4326.23
//
Query:       CCE27428.1  [L=596]
Description: related to O-succinylhomoserine (thiol)-lyase met-7 chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-26   91.9   0.0    4.1e-26   91.4   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    1.7e-05   24.2   0.0    3.1e-05   23.3   0.0    1.4  1  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   4.6e-30   4.1e-26      64     381 ..     260     585 ..     243     586 .. 0.86

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 4.6e-30
                      HHT-SEEEEESSHHHHHHHHHHTTS-T.TEE.....EEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCT..TEEEEEEESS-TT CS
  Cys_Met_Meta_PP  64 LeggeaalavssGmaAiaaailallka.Gde.....ivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaike..ntklvylEtptnp 149
                      L +++ +l+++sGm+Aia++  a+++   d      + v   lY  t+++++kv k     + +   sd+++le+ ++   + +++y+E p+np
       CCE27428.1 260 LVQTNDVLLYPSGMSAIASSASAICNLqPDSsepfrVAVFGFLYVDTFKVFTKVHKFDYKLYGHASASDMDQLERDLRGgmRIHALYTEFPGNP 353
                      5567899**********999888887635546788899999************98766666789999**********9877999********** PP

                      TT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHH.HHHHHT-B--HHHHHHH CS
  Cys_Met_Meta_PP 150 llkvvDiekiaklakkagvlvvvDntfaspllqrplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkf.lqnalGavlspfdawll 242
                      ll  +D++++ +l ++ +  +vvD t+ + ++   l+  +D+ + S TK  +G  +v++G ++ + +++  + l+  l+ +   +  p d  ++
       CCE27428.1 354 LLGSLDLHHLHALSQQYNFYLVVDDTVGTAINLD-LTPFCDVLCTSLTKMFSGSCNVMGGSVTLSPRCRSRDALRSaLMSQYLDTYFPGDVLVM 446
                      *****************************99875.6666************************99999988888753567777888899***** PP

                      HHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-T.TSTTSTTHHHHHHHSSSG-S..EEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS- CS
  Cys_Met_Meta_PP 243 lrGlkTLslRlerhqenAlkvAefLekhpkvekvyYp.glpshpqhelakkqlkgagg..vlsFelkseeekakkfvdnlklfslaeslGgves 333
                          +  + R++ +++nA ++A  L++h +v +v Yp g p++  ++  k+   +ag+  +ls +     ++a +f d+l++++   slG   +
       CCE27428.1 447 EANSRDFAQRMSVANANAEALADRLRRHSSVADVFYPkGSPTQYLYDRYKRASVEAGYgfLLSVRFVVP-AAAIAFYDALEVAK-GPSLGTNFT 538
                      ************************************978999999***999876665544999888877.679********875.79***9887 PP

                      EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 334 lielpasmthasipkeereaagvtddliRlsvGiEdvdDliaDlkqal 381
                      l  + ++   ++ + e  +  gv ++l+R+s+G+E  + l + ++ al
       CCE27428.1 539 LSCA-YTWLAHAAELEWAAGFGVVEHLVRMSIGVETRQVLEEKIDVAL 585
                      7544.4444445677888999***************999988888877 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   3.5e-09   3.1e-05      44     278 ..     241     461 ..     236     492 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.5e-09
                    THHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E..EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHH CS
  Aminotran_1_2  44 dglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgde..ilvpdptyasyknilrlsggevvryplyseedfhldlealee 137
                    d +++ ++++a+++ +  +l  +++  +++ sG +a+++ + ++++l+p++   + v    +  +++     ++  + y+ly  ++   d+++le+
     CCE27428.1 241 DAADTIRQRIADLYTSPWRLVQTND-VLLYPSGMSAIASSASAICNLQPDSSepFRVAVFGFLYVDTFKVFTKVHKFDYKLYGHAS-ASDMDQLER 334
                    6678899********4445555555.9******************98877643377777777777776667777777777775555.88******* PP

                    HHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTT.EEEEEESSSTT.SSGGG-EE CS
  Aminotran_1_2 138 alkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn.llivgslsKaf.GlaGeRvG 231
                    +l+       ++  +++e p NP    ++l +l++l    ++yn++l+vD++    v +         n++  p  +++++sl K f G+ +   G
     CCE27428.1 335 DLRG----GMRIHALYTEFPGNPLLGSLDLHHLHAL---SQQYNFYLVVDDT----VGT-------AINLDLTPFcDVLCTSLTKMFsGSCNVMGG 412
                    ***8....5588************************...***********86....444.......344444444458999999988755544449 PP

                    EEEEEH..HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 232 yilgna..avvsqlrklsrpflsssllqaavaaalsdallkqseleemr 278
                     ++ ++  + +++lr++  + + +++ +  v+ +  ++ + +++++ + 
     CCE27428.1 413 SVTLSPrcRSRDALRSALMSQYLDTYFPGDVLVMEANSRDFAQRMSVAN 461
                    9888655588888888888888877776655555444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 4933.98
//
Query:       CCE27429.1  [L=1127]
Description: related to linoleate diol synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-41  140.4   0.0      2e-27   96.0   0.0    3.6  2  An_peroxidase  Animal haem peroxidase
    0.00033   19.5   0.0      0.034   12.9   0.0    2.2  2  p450           Cytochrome P450


Domain annotation for each model (and alignments):
>> An_peroxidase  Animal haem peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   4.1e-13   3.7e-09       1      90 [.     180     261 ..     180     265 .. 0.92
   2 !   96.0   0.0   2.2e-31     2e-27     146     504 ..     263     642 ..     257     646 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 4.1e-13
                    S--TTSTTSSTTSTTTT-TTEE-BBSS-----TCG.GTTS--....SHHHHHHHHCTB-SS---B.-SCBHHHHHHHHHHHCCC--B.EEE CS
  An_peroxidase   1 yrsidGscNnlknpewGsagtpfkRllpaaYedgvseprgssgselPsprevsnklladdeslpd.akltlllmqwgqfidhDltstpest 90 
                    yr+ dGs Nn   p++G+agtp+ R +++        p++    +lP+p  + ++++a+d ++++ ++++ +++ w  ++ hDl+ t++++
     CCE27429.1 180 YRQPDGSNNNPLLPKLGAAGTPYSRTVKPG-------PAN--MGSLPDPEAIYEAVMARDVFKKNpNNVSSIMWYWATIVIHDLFWTNSKN 261
                    8***************************97.......555..4579**************9999989*****************9998776 PP

  == domain 2  score: 96.0 bits;  conditional E-value: 2.2e-31
                    EEESS-SSSSSHHHH-SSHHHHHHHB-SSTT-B--EETT.CCCS-BSTTT-TT--S.-GCSB-SSSCCG.CCBHHHHHHHHHHHHHHHHHHHHHHH CS
  An_peroxidase 146 qlnqvTsflDasqvYGsseeearkLRsfkgGkLkvsskegkellPldeegedcaseeesecfkaGdsra.nenpgLlalhtlflReHNriAeeLkk 240
                      n  +s+lD s +YG+s+e  +++R+f++GkLk +         +                  +d+r     pg+ +l ++f R HN++A++L++
     CCE27429.1 263 NQNDSSSYLDLSPLYGNSKEARDSIRTFRDGKLKPDV--------F------------------ADKRLiANPPGVCVLLVMFNRFHNHVATHLAA 332
                    56999*****************************421........1..................22222023478999999999999999999999 PP

                    H..................-TTS..-HHHHHHHHHHHHHHHHHHHHHCTHHHHHCSSHHH.HHH.TT-H........HHST-STTS----BHHHHH CS
  An_peroxidase 241 l..................nphw..sdeelfqeARkiviAliqkItynewLpalLgkena.nkyglllk.......gkykgydesvnpsisneFat 308
                    +                  +  w   +e+lf++AR++++ l+ +It+ +++ ++++ +++ + + l ++       g+ +g ++ v   +s eF  
     CCE27429.1 333 InennrfaeppsnlegealEAAWrkREEDLFETARLVTSGLYINITLVDYVRNIVNLNRVdTPWTLDPRqemgvakGTAQGSESGVGNVVSAEFNL 428
                    98889999999988999996666226788***************************7555223444444555444444589999**********77 PP

                    THCGGHHHHS-SEE.EEE-.G.......CCS-EEEEEEGGGCCCHHHHH..TTH-CHHHHHHHHCSB-B-S.TT-B-HHHHTBBCSTTTTT-.... CS
  An_peroxidase 309 aafrfghslvpdei.erlden.......keiseeqklplkdsffnpael..leggldellrgllsqpaeav.dqnlteelrnklfkkseesg.... 389
                     ++r+ hs +++   + ++ +       +++ e  +l++     ++ e+   ++  ++ + g+++ p ++  d  l++ ++  + ++  ++g    
     CCE27429.1 429 -CYRW-HSCISEMDdHWIQ-DfyakllgDDYGE-MNLSVLIGAIKKYEVsvSKDPAERTFGGFTRGPDGSFnDDDLVNCISTAVEQPGGAFGaqnv 520
                    .***9.**99986523333.2233344333322.34444444555555532344599999999999999999999999999877666653443444 PP

                    ....B-HHHHHHHHHHHCT--BHHHHHHHTT----SSCCCC-...SHHHHHHHHHHTTSCCCSBHHHHHHHS...-B-.TTBSSCHHH...HHHHH CS
  An_peroxidase 390 ....lDlaalniqRgRDhGlpsYnefrrlcglkkaksfedlteeideeeleklkevYgsvediDllvGglaE...kpl.pgalvGptf...aciia 474
                          +  l i RgR   l++ nefr+++glk+ ++fe++++  d+ ++++l+++Y+++++++l+ G++aE   +p+ pg  + pt    ++++ 
     CCE27429.1 521 primKPVEMLGILRGRKWNLAGLNEFRKHFGLKAYDTFEEINS--DPGVAQSLRNLYQHPDHVELYPGLVAEegkTPMvPGVGIAPTYtisRVVLS 614
                    44446677899*******************************9..99999**********************554233366655554311145666 PP

                    HHHHHHHHT-CCGTTTHCHHHHHTHHHHCC CS
  An_peroxidase 475 dqfrrlrdgDRFfyenkkqpgvfteeqlee 504
                    d+ + +r gDR++++++++ g +t+ +++e
     CCE27429.1 615 DAVSLVR-GDRHYTTDYHP-GYLTQWGFHE 642
                    6666666.******98655.9988877665 PP

>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0015        14      42     192 ..     704     855 ..     675     890 .. 0.67
   2 !   12.9   0.0   3.8e-06     0.034     341     393 ..     998    1055 ..     988    1081 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0015
                 TTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH..HHHHHHHHHHHHHHTSH.STT.THHHHHHHHHHHHHHHHHCCCCHC CS
        p450  42 gskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang..ekwkklRrfltptltsf.gkl.sleelveeeaedlveklrkkages 136
                  + p v +s+++a+k vl ++++++++   e  ++++   +     ++  g  +  +   r +++tl++  + +  ++e v++  ++  e+l  +++++
  CCE27429.1 704 YQSPRVSISSYSAAKYVLSDETKYKAA--WEEGFRHLL-GSARSKPATRPGdeHSSEADQRPILQTLLQLqQ-KdGWKESVKRFYAKISETLLAEKSFK 798
                 6778999**************988777..456666644.555555555555334445556667777776622.32455555544444444444444444 PP

                 S....EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCC CS
        p450 137 s....elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqll 192
                       +di++++ + a +     lF++++++ e+++    v   ++l++ ls+ +v+++
  CCE27429.1 799 IagtsHVDIVRDVGNLAHTHFVARLFNMPLKSAENPR---GVISEQALYQTLSTIFVCIF 855
                 377889**********************987777765...34444444444444444444 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.8e-06
                  EEEEESSSCEEETT.....EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS CS
        p450  341 llpRevtkdvvirg.....ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg 393 
                  ++ R ++++ +i +      ++ +G +++++ +a  r++e+fp++ + +p+R ld  +
  CCE27429.1  998 HVYRHASQPDTITEsdgqeIHVQAGHRIFLPSGAAAREEEHFPDAGTVNPQRPLDSYV 1055
                  46777777666655556779**********************************9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.39
# Mc/sec: 8676.72
//
Query:       CCE27430.1  [L=536]
Description: uncharacterized protein CPUR_00904 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-14   53.9   0.0    3.3e-14   52.9   0.0    1.5  1  JAB         JAB1/Mov34/MPN/PAD-1 ubiquitin protease
    9.6e-09   35.4   0.0    2.2e-08   34.3   0.0    1.6  1  USP8_dimer  USP8 dimerisation domain
    6.2e-05   22.8   0.0    0.00016   21.4   0.0    1.6  1  Prok-JAB    Prokaryotic homologs of the JAB domain


Domain annotation for each model (and alignments):
>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   5.5e-18   3.3e-14       6     117 ..     360     463 ..     356     464 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 5.5e-18
                 EEEEHHHHHHHHHHHHHHHHHTS--EEEEEEEESSSEEEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHCTT.SEEEEEEEESSSS-SS--H CS
         JAB   6 vhleslvllkildhalrtekeeeevmGlliGelnddttveitnvfalpfeetekdvdavsldqeylekksellkklrgr.ervvGWYhshpditvwlse 103
                 + l ++    ++d+a++++k++ e +G+l+G+  ++  + +++ ++  ++ t++++++++++ +        ++  +g+ + v+GW+h+hp++t+++s+
  CCE27430.1 360 IFLPKKLRATFMDIASQNTKRGLEMCGILCGTPVNN-ALFVRCLLIPDQKCTSDTCETENESAI--------FDFCAGEdLMVLGWIHTHPTQTCFMSS 449
                 556677778899************************.999***************888777666........67777777******************* PP

                 HHHHHHHHHHHHST CS
         JAB 104 vdvrtqalyqrmde 117
                  d++t+a yq m +
  CCE27430.1 450 RDLHTHAGYQVMMP 463
                 **********9987 PP

>> USP8_dimer  USP8 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   3.8e-12   2.2e-08      10     114 ..      13     116 ..       8     117 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 3.8e-12
  USP8_dimer  10 ssledLkkladklkkdkknksikrllrsaeklfkkAeeyrlegdeEkAYvlymkylnll.elIrkksdykekkasvkellgdkkankvildklekLkes 107
                 +s+++L+++a+ + + ++n++ k   r ae l+++A+ + ++gd  +AY+++ +   l+   +r ++ yk+ ++     ++ +k+++ +l+ le++k  
  CCE27430.1  13 QSVKELVDQAENF-NFNTNIPFKHWTRAAETLYQEAAFALSDGDYGRAYMMLYRHSVLVlDRLRHHPQYKAPESRLAV-QELSKRMNSVLTDLEEIKPI 109
                 6899********9.9999**************************************9999**********99998887.66666666669******988 PP

  USP8_dimer 108 LkkrYee 114
                  ++++ee
  CCE27430.1 110 IRRQFEE 116
                 8887775 PP

>> Prok-JAB  Prokaryotic homologs of the JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.6e-08   0.00016      11      97 ..     375     460 ..     366     480 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.6e-08
    Prok-JAB  11 harrahpeEtcGlllgkeseseevivvplvnewsn......rfeipdpedslarlkfearerglevvgiwHSHpggsarPSetDrrdaaalar 97 
                 ++    + E cG+l g+    +   +v+++ ++++      + e ++  ++++     ++ ++l v+g +H+Hp+   + S+ D++++a+  +
  CCE27430.1 375 SQNTKRGLEMCGILCGTP--VNNALFVRCLLIPDQkctsdtC-ETENESAIFD----FCAGEDLMVLGWIHTHPTQTCFMSSRDLHTHAGYQV 460
                 55667899********98..6666666666555555553322.2224444444....567**************************9998533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4009.24
//
Query:       CCE27431.1  [L=129]
Description: uncharacterized protein CPUR_00905 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-19   70.1  14.9    1.6e-19   69.8  14.9    1.1  1  Prefoldin_2      Prefoldin subunit
    0.00083   19.4   4.3     0.0012   18.8   4.3    1.3  1  Prefoldin_3      Prefoldin subunit
  ------ inclusion threshold ------
      0.012   15.8  10.8        0.2   11.9   2.5    2.1  2  Spc24            Spc24 subunit of Ndc80
      0.017   15.4   6.8       0.11   12.8   2.0    2.4  3  DUF4164          Domain of unknown function (DUF4164)
      0.022   12.6  12.2      0.025   12.4  12.2    1.0  1  Nup88            Nuclear pore component
      0.034   14.1   2.2      0.034   14.1   2.2    2.2  2  MIP-T3_C         Microtubule-binding protein MIP-T3 C-termina
      0.036   14.2   5.3        1.2    9.3   1.4    2.1  2  COG5             Golgi transport complex subunit 5
      0.087   13.1  11.7       0.69   10.3   1.9    2.3  2  Siah-Interact_N  Siah interacting protein, N terminal
       0.12   12.1  12.2       0.28   10.9   2.2    2.1  2  DUF4201          Domain of unknown function (DUF4201)
       0.12   12.8   9.6        1.2    9.6   0.4    2.4  2  Cep57_MT_bd      Centrosome microtubule-binding domain of Cep
       0.12   12.5   0.7       0.12   12.5   0.7    2.4  2  JIP_LZII         JNK-interacting protein  leucine zipper II
       0.18   12.1   8.1       0.38   11.0   8.1    1.5  1  PHM7_cyt         Cytosolic domain of 10TM putative phosphate 
        0.2   11.9  11.8        1.2    9.4   1.1    2.8  2  ABC_tran_CTD     ABC transporter C-terminal domain
       0.21   11.7  13.9        0.5   10.5   3.8    2.2  2  Tropomyosin_1    Tropomyosin like
       0.32   10.9  13.8        3.7    7.5  13.8    2.0  1  Prefoldin        Prefoldin subunit
       0.32   11.4  14.0       0.12   12.9   2.9    2.1  2  Fez1             Fez1
       0.47    9.8  16.7        2.9    7.2  16.7    1.9  1  GAS              Growth-arrest specific micro-tubule binding
       0.51    9.6  12.9        4.8    6.4  12.9    1.9  1  DUF4407          Domain of unknown function (DUF4407)
        0.7    8.7  15.6        1.8    7.4  15.6    1.6  1  Spc7             Spc7 kinetochore protein
       0.75   10.3   9.0        3.2    8.3   1.7    2.2  2  NPV_P10          Nucleopolyhedrovirus P10 protein
       0.77    9.6  17.0        1.3    8.9   2.6    3.3  2  DivIC            Septum formation initiator
       0.82   10.0  16.9        2.2    8.6   4.3    2.1  2  YlqD             YlqD protein
        1.1    9.6  23.9       0.64   10.3   9.5    2.1  2  OmpH             Outer membrane protein (OmpH-like)
        1.4    8.6  12.7        1.2    8.7   2.5    2.1  2  GrpE             GrpE
        1.5    9.2   5.5         15    6.0   0.4    2.1  2  DUF948           Bacterial protein of unknown function (DUF94
        1.7    8.1  16.7       0.13   11.7   3.3    2.0  2  Golgin_A5        Golgin subfamily A member 5
        1.7    9.1   8.3         17    5.9   1.4    3.2  3  FlaC_arch        Flagella accessory protein C (FlaC)
        3.1    6.2  12.0        4.1    5.8  12.0    1.1  1  Macoilin         Macoilin family
        4.5    7.9  18.0        2.7    8.6   6.6    2.6  2  Com_YlbF         Control of competence regulator ComK, YlbF/Y
        4.5    8.2  14.9        4.9    8.0   2.6    2.5  2  Rho_Binding      Rho Binding
        4.8    7.4  15.4        8.7    6.6  15.4    1.5  1  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
          6    6.9  17.4         54    3.8  17.3    1.9  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
        6.4    7.0  11.2      2e+02    2.1  11.0    2.0  1  Fib_alpha        Fibrinogen alpha/beta chain family
        7.9    7.2  11.0    1.4e+03   -0.0  11.0    2.2  1  YabA             Initiation control protein YabA
        8.4    6.8  18.0         66    3.9  17.0    2.1  1  DUF4200          Domain of unknown function (DUF4200)
          9    6.8  14.0        7.2    7.1   2.5    2.1  2  CENP-H           Centromere protein H (CENP-H)


Domain annotation for each model (and alignments):
>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8  14.9   3.3e-22   1.6e-19       1     104 [.       9     112 ..       9     114 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 3.3e-22
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2   1 qelinkfqqlqqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkee 98 
                  q+l + +q+lqq+lq+ ++ +++l+ q +e+  v  e+e+l ed+++ykl+G+vl+kqdk e++++++ r+++++ e+++le q+++ + ++e+ k+e
   CCE27431.1   9 QALSEDYQKLQQELQDSVNSRQKLQSQQQENAGVFREFEKLGEDETIYKLMGPVLMKQDKVEAESTVKGRLDFIKGEVTRLETQIKETQDKMEKKKTE 106
                  788999******************************************************************************************** PP

                  HHCCTS CS
  Prefoldin_2  99 lqkklq 104
                  + + + 
   CCE27431.1 107 ILQVQT 112
                  987665 PP

>> Prefoldin_3  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   4.3   2.5e-06    0.0012       5      98 ..       6     100 ..       2     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.5e-06
  Prefoldin_3   5 yklreweaeydglkeeisalke...eddateedllriardfegslvtekEveeilGekqgvtrskqQvvdlisrRiDYVkqniktlekrleaaenkl 98 
                  +kl+  +++y++l++e+++  +   + ++++++ + + r+fe  l +++ + +++G   + ++ k    + ++ R+D++k  ++ le +++  ++k+
   CCE27431.1   6 AKLQALSEDYQKLQQELQDSVNsrqKLQSQQQENAGVFREFEK-LGEDETIYKLMGPVLM-KQDKVEAESTVKGRLDFIKGEVTRLETQIKETQDKM 100
                  578888889999999988765556577889999999*****84.5566669*****9776.788888999***********************9997 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.5   0.00041       0.2       9      57 ..       4      58 ..       2      59 .. 0.79
   2 ?    9.0   1.3    0.0032       1.6      11      45 ..      84     118 ..      76     129 .] 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00041
       Spc24  9 iakelsdleselesleselaelkeeleeleeesee......keservedetllkl 57
                ++ +l+ l ++ ++l++el++  +  ++l+++++e      + +++ edet++kl
  CCE27431.1  4 VQAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQEnagvfrEFEKLGEDETIYKL 58
                5678999999999999999999999999999999955555433333789999998 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0032
       Spc24  11 kelsdleselesleselaelkeeleeleeeseeke 45 
                  e++ le+++++ + + +++k+e+ +++++ ++++
  CCE27431.1  84 GEVTRLETQIKETQDKMEKKKTEILQVQTSAQAEA 118
                 57899***********************9999833 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.0   0.00022      0.11      35      71 ..       2      38 ..       1      45 [. 0.92
   2 ?    1.1   0.1      0.97   4.9e+02      26      48 ..      30      53 ..      28      54 .. 0.78
   3 ?    5.0   0.2     0.061        30      20      64 ..      58     102 ..      52     115 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00022
     DUF4164 35 deleaeiealgedrsRLaeeLdqaearaarleevnrE 71
                ++++a+++al ed ++L +eL ++ +  ++l++ ++E
  CCE27431.1  2 ADVQAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQE 38
                57899***************************99998 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.97
     DUF4164 26 rrleaerkr.deleaeiealgedr 48
                ++l++++++ + + +e+e+lged+
  CCE27431.1 30 QKLQSQQQEnAGVFREFEKLGEDE 53
                677776666589999******997 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.061
     DUF4164  20 LEkavdrrleaerkrdeleaeiealgedrsRLaeeLdqaearaar 64 
                 L + v ++ ++ ++++ ++ ++  ++ + +RL+ ++ +++++ ++
  CCE27431.1  58 LMGPVLMKQDKVEAESTVKGRLDFIKGEVTRLETQIKETQDKMEK 102
                 555566677777777777777777777778888777777766554 PP

>> Nup88  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4  12.2     5e-05     0.025     555     679 ..       3     124 ..       1     128 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5e-05
       Nup88 555 eiekrvkllkkqkeqqleelqsleeerkslseraeklAekyeeikdkQeklvrrvkkvlkrlnsklpvlseaeremkkelekikeklkslknalkqvkk 653
                 +++ + ++l++  ++ ++elq+  ++r++l+ + ++ A  + e ++  e+  + + k++  +  k+ + +eae  +k  l  ik ++  l++++k+ + 
  CCE27431.1   3 DVQAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQENAGVFREFEKLGED--ETIYKLMGPVLMKQ-DKVEAESTVKGRLDFIKGEVTRLETQIKETQD 98 
                 6788999************************************9986554..33445555544443.568999999*********************** PP

       Nup88 654 kldkqrkqiakskeeekksslelsek 679
                 k++k++++i + +++++ ++ +  ++
  CCE27431.1  99 KMEKKKTEILQVQTSAQAEASNGGKS 124
                 **********9999877776655555 PP

>> MIP-T3_C  Microtubule-binding protein MIP-T3 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.7      0.13        66      73     102 ..       8      36 ..       3      52 .. 0.53
   2 ?   14.1   2.2   6.9e-05     0.034      99     145 ..      66     112 ..      63     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.13
    MIP-T3_C  73 ldfiqdDidsMqrELemWrseyrqqaeela 102
                 l++  +D   +q+EL+    ++rq+ +  +
  CCE27431.1   8 LQALSEDYQKLQQELQDS-VNSRQKLQSQQ 36 
                 445556666666666542.22233333333 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 6.9e-05
    MIP-T3_C  99 eelaeerrateealeplkaqlaeleeaIkdqkekisnvrakilkNea 145
                 ++  e++++ ++ l+ +k ++  le +Ik++++k+++ + +il+ + 
  CCE27431.1  66 QDKVEAESTVKGRLDFIKGEVTRLETQIKETQDKMEKKKTEILQVQT 112
                 5566777778889999***************************9765 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.4    0.0025       1.2      76     110 ..       3      37 ..       1      40 [. 0.90
   2 ?    7.0   0.1     0.013       6.3      73     115 ..      71     113 ..      55     117 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0025
                 XXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHH CS
        COG5  76 elksslesLsasyerlkskvlepyeeaeklqsalk 110
                 +++ +l++Ls+ y++l++++ +  ++ +klqs+++
  CCE27431.1   3 DVQAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQ 37 
                 678899***********************999987 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.013
                 XXXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHHHHHHH CS
        COG5  73 vlselksslesLsasyerlkskvlepyeeaeklqsalkrlhqt 115
                   s++k++l+ ++  + rl++++ e  +++ek+++++ +++++
  CCE27431.1  71 AESTVKGRLDFIKGEVTRLETQIKETQDKMEKKKTEILQVQTS 113
                 5678889999999999999999999999999988888777665 PP

>> Siah-Interact_N  Siah interacting protein, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.9    0.0014      0.69      27      55 ..       9      38 ..       5      58 .. 0.71
   2 ?    8.3   2.5    0.0055       2.8      27      67 ..      80     120 ..      64     128 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0014
  Siah-Interact_N 27 dlLsaeirKleteilklkek.qkakaqqks 55
                     ++Ls + +Kl++e++ + ++ qk ++qq++
       CCE27431.1  9 QALSEDYQKLQQELQDSVNSrQKLQSQQQE 38
                     79************7654431333333333 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0055
  Siah-Interact_N  27 dlLsaeirKleteilklkekqkakaqqksqlleeekpaasv 67 
                      d  + e+ +let i++ ++k ++k+++  q+ ++++  as+
       CCE27431.1  80 DFIKGEVTRLETQIKETQDKMEKKKTEILQVQTSAQAEASN 120
                      677889********888777777777777754444444554 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.0      0.01       5.1      80     113 ..       2      35 ..       1      65 [. 0.72
   2 ?   10.9   2.2   0.00055      0.28      73     121 ..      66     114 ..      58     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.01
     DUF4201  80 thlkeklhmleselselkkelkekeerlaklrke 113
                 ++++ kl++l++ +++l++el++  + ++kl+ +
  CCE27431.1   2 ADVQAKLQALSEDYQKLQQELQDSVNSRQKLQSQ 35 
                 5677788888888888888887777777776544 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00055
     DUF4201  73 tktvhalthlkeklhmleselselkkelkekeerlaklrkelykvkler 121
                 +++v a +++k +l++++ e+ +l++++ke +++ +k + e+ +v++  
  CCE27431.1  66 QDKVEAESTVKGRLDFIKGEVTRLETQIKETQDKMEKKKTEILQVQTSA 114
                 67889999************************************99765 PP

>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   3.3     0.014       6.8      27      59 ..       4      38 ..       1      59 [. 0.83
   2 ?    9.6   0.4    0.0024       1.2      52      73 ..      88     109 ..      80     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.014
  Cep57_MT_bd 27 lklelqelaaqynaldpsl..gkrkRkdLaeelee 59
                  +++lq l++ y++l++ l  + ++R++L+++ +e
   CCE27431.1  4 VQAKLQALSEDYQKLQQELqdSVNSRQKLQSQQQE 38
                 57899999999999999998888999999988876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0024
  Cep57_MT_bd  52 dLaeeleelvkrlEaKadqIyk 73 
                   L+ +++e ++++E+K+  I +
   CCE27431.1  88 RLETQIKETQDKMEKKKTEILQ 109
                  6899999999999999999865 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.7   0.00024      0.12      33      65 ..       6      38 ..       2      49 .. 0.92
   2 ?    3.4   0.8      0.18        88      47      70 ..      77     100 ..      66     115 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00024
    JIP_LZII 33 arvdeLtsereiLreEleslqkakerlesrike 65
                a++  L+++++ L++El+ + +++++l+s+ +e
  CCE27431.1  6 AKLQALSEDYQKLQQELQDSVNSRQKLQSQQQE 38
                79999***********************99876 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.18
    JIP_LZII  47 eEleslqkakerlesrikelEeel 70 
                   l+ ++ + +rle++ike+++++
  CCE27431.1  77 GRLDFIKGEVTRLETQIKETQDKM 100
                 455555556666666666665544 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   8.1   0.00077      0.38      43     138 ..       7     121 ..       2     129 .] 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00077
    PHM7_cyt  43 kldklveerekavrkleaalskykkngkklpkkr.........................pthklgflglkligkkv.daidyyrekleeldeeieeere 115
                 kl+ l e+ +k++++l+   + ++k +++++  +                         ++ k+        + +v   +d+++ ++ +l+ +i+e ++
  CCE27431.1   7 KLQALSEDYQKLQQELQDSVNSRQKLQSQQQE-NagvfrefeklgedetiyklmgpvlmKQDKVEA------ESTVkGRLDFIKGEVTRLETQIKETQD 98 
                 78899999999999999988888777765543.258999999999999888888875443333332......33441459******************* PP

    PHM7_cyt 116 kvkkkplgaaFvtfesersaaav 138
                 k +kk++++  v+ + + +a + 
  CCE27431.1  99 KMEKKKTEILQVQTSAQAEASNG 121
                 ***********999888777654 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.8    0.0074       3.7      40      58 ..       4      23 ..       1      33 [. 0.84
   2 ?    9.4   1.1    0.0024       1.2       9      35 ..      78     104 ..      64     121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0074
  ABC_tran_CTD 40 p.eklaelsaeleeleaeLe 58
                    +kl++ls+ +++l++eL+
    CCE27431.1  4 VqAKLQALSEDYQKLQQELQ 23
                  33899************997 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0024
  ABC_tran_CTD   9 eleeleaeIeaLEeeiaeleaeladpe 35 
                   +l+ +  e  +LE++i+e ++++++  
    CCE27431.1  78 RLDFIKGEVTRLETQIKETQDKMEKKK 104
                   566789999**************9765 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.8     0.001       0.5      39      88 ..       3      52 ..       1      55 [. 0.90
   2 ?    7.1   2.5     0.012       5.8      43      71 ..      78     106 ..      63     127 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.001
  Tropomyosin_1 39 sLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEee 88
                   + + k+q+l e+  kl+++l+++ ++ ++ ++++++n  + r  + L e+
     CCE27431.1  3 DVQAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQENAGVFREFEKLGED 52
                   6899************************9999999999999988888775 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.012
  Tropomyosin_1  43 knqqleeevekleeklkeakekaeesekk 71 
                    +++ +  ev +le+++ke+++k+e+++++
     CCE27431.1  78 RLDFIKGEVTRLETQIKETQDKMEKKKTE 106
                    55555666666666666666666655543 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  13.8    0.0074       3.7      12     118 ..       5     111 ..       2     119 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0074
                 HHHHHHHHHHHHHHHHHHHHHTT.-TT-EEEEEEETTEEEEEE--STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  12 laqlkeaieelektletlktlkkedegkevlvplgaglyvkaevkdtdkvlvdlGagyyveksleeAiellkkkleelekqlekleeeleklkdqittl 110
                 +a+l++  e+++k+ + l++  ++ +  + + + +ag++ + e    d+ + +l   + ++ ++ eA+ ++k +l+ ++  ++ le ++++ +d++++ 
  CCE27431.1   5 QAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQENAGVFREFEKLGEDETIYKLMGPVLMKQDKVEAESTVKGRLDFIKGEVTRLETQIKETQDKMEKK 103
                 67999999*****************************************99999999999999999998888888777777777777777777777766 PP

                 HHHHHHHH CS
   Prefoldin 111 eanlaqly 118
                   ++ q++
  CCE27431.1 104 KTEILQVQ 111
                 66655554 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   3.4     0.078        39      87     119 ..       6      38 ..       1      79 [. 0.49
   2 ?   12.9   2.9   0.00023      0.12       9      42 ..      83     116 ..      78     128 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.078
        Fez1  87 ekvekleeelkelreelselsleeeeaalesde 119
                  k+++l+e+ ++l++el+++ +++++ +++++e
  CCE27431.1   6 AKLQALSEDYQKLQQELQDSVNSRQKLQSQQQE 38 
                 344444444444444444433333332222222 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00023
        Fez1   9 sGEislLKqQLkdsqaevtqklseivalkaqlre 42 
                  GE+  L +Q+k++q  + +k  ei++++++ + 
  CCE27431.1  83 KGEVTRLETQIKETQDKMEKKKTEILQVQTSAQA 116
                 5999999999999999999999999999887664 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  16.7    0.0057       2.9      59     180 ..       4     122 ..       1     129 [] 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0057
         GAS  59 lkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLekklkalqee 157
                  + +L+++ e+ ++L+++l++  + +q+l+++++++  + +e+++l ++  + +  +  v  + d+++   e++++     ++ + + Le+++k+ q++
  CCE27431.1   4 VQAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQENAGVFREFEKLGEDETIYKL-MGPVLMKQDKVE--AESTVKGRLDFIKGEVTRLETQIKETQDK 99 
                 5789******************************************988777665.444444445443..456677777777888899*********** PP

         GAS 158 lEkkeaqleevlaaanldpaals 180
                 +Ekk+ ++ +v ++a+ ++++  
  CCE27431.1 100 MEKKKTEILQVQTSAQAEASNGG 122
                 **************999977655 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  12.9    0.0096       4.8     145     238 ..       4     119 ..       1     129 [] 0.56

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0096
     DUF4407 145 lqaeidaaearldalraeaqkeldgtk..gtgttgvaGkgpaake...................kkaqldaaqaelaelkakld.atarlaalraelae 221
                  qa+++a+++++++l++e+q+ ++  +  +++ +  aG   ++++                   k ++  + + +l+ +k++++  ++++++ ++++++
  CCE27431.1   4 VQAKLQALSEDYQKLQQELQDSVNSRQklQSQQQENAGVFREFEKlgedetiyklmgpvlmkqdKVEAESTVKGRLDFIKGEVTrLETQIKETQDKMEK 102
                 566666666666666666666666655554443344444444444666777777777777666655555555566666666655555556666666666 PP

     DUF4407 222 leaerakeraasqaaaa 238
                  ++e+ + +++ qa+a+
  CCE27431.1 103 KKTEILQVQTSAQAEAS 119
                 55555555555554443 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  15.6    0.0036       1.8     143     246 ..       3     117 ..       1     128 [. 0.74

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0036
        Spc7 143 gleenlegleedkelLekqeeeldellpeleeeka...eleeeleklqeaaeeles.....idkeeLee...lreelaelkaeieekkkelaelqeqle 230
                  ++ +l++l ed+++L+++ +   +  ++l+++++    + +e+ekl e ++  +      ++++++e+   ++ +l+ +k e+ +++++++e q+++e
  CCE27431.1   3 DVQAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQenaGVFREFEKLGEDETIYKLmgpvlMKQDKVEAestVKGRLDFIKGEVTRLETQIKETQDKME 101
                 568899999999999999999999999999888874445778888888844433335566655666653223788999999999999999999999999 PP

        Spc7 231 eleekieelkeqksel 246
                 +++++i +++++ +  
  CCE27431.1 102 KKKTEILQVQTSAQAE 117
                 9999988888777654 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.7    0.0065       3.2      14      49 ..       2      37 ..       1      48 [. 0.87
   2 ?    6.6   1.0     0.021        11      16      56 ..      75     112 ..      63     119 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0065
     NPV_P10 14 kavddkVdalqqqvddvqenlpdvtelnekLdaqsa 49
                ++v+ k++al++  +++q++l+d  +  +kL++q++
  CCE27431.1  2 ADVQAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQ 37
                578999*****************8888889998876 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.021
     NPV_P10  16 vddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaelet 56 
                 v+ ++d ++ +v++++++++++   ++k+++  +++ +++t
  CCE27431.1  75 VKGRLDFIKGEVTRLETQIKET---QDKMEKKKTEILQVQT 112
                 6667777788888888877773...4777777777777766 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.6    0.0025       1.3      19      59 ..      15      57 ..      14      58 .. 0.74
   2 ?    4.4   2.3     0.064        32      20      42 ..      87     109 ..      74     118 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0025
                HHHHHHHHHH...HHHHHHHHHHHHHHHHHHHCC-XXXXXXXXX CS
       DivIC 19 ykqlkqeiaa...lqaelaklkaeneeLeaevkdLksdedyiee 59
                y++l+qe+++     ++l+++++en+   +e ++L  +++ i +
  CCE27431.1 15 YQKLQQELQDsvnSRQKLQSQQQENAGVFREFEKL-GEDETIYK 57
                4555555544111689999****************.89999876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.064
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  20 kqlkqeiaalqaelaklkaenee 42 
                  +l+ +i++ q++++k+k e+ +
  CCE27431.1  87 TRLETQIKETQDKMEKKKTEILQ 109
                 34455555555555555555444 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.8    0.0084       4.2      23      61 ..       2      40 ..       1      58 [. 0.85
   2 ?    8.6   4.3    0.0045       2.2      16      71 ..      66     120 ..      61     129 .] 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0084
        YlqD 23 qqlqaqieqldkelqqLefqakrlikeikkqsaqqieei 61
                +++qa++++l ++ q+L+++++  +++ +k + qq+e++
  CCE27431.1  2 ADVQAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQENA 40
                57899**********************999988888775 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0045
        YlqD  16 klKeelqqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekse 71 
                 + K e++++++ +++ ++ e+ +Le+q k++ ++++k+++ +i ++q+++++e s+
  CCE27431.1  66 QDKVEAESTVKGRLDFIKGEVTRLETQIKETQDKMEKKKT-EILQVQTSAQAEASN 120
                 568899999999*******************999998665.777777777776654 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   9.5    0.0013      0.64      31      74 ..       4      41 ..       1      82 [. 0.61
   2 ?    5.8   6.8     0.033        16      17      60 ..      82     126 ..      53     129 .] 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0013
                HHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHH CS
        OmpH 31 lqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqq 74
                 qa+l+a+ +++qklq+elq++ ++      +q+lq ++qe   
  CCE27431.1  4 VQAKLQALSEDYQKLQQELQDSVNS------RQKLQSQQQENAG 41
                6788888888888888888744433......3333333333322 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.033
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..-HH CS
        OmpH  17 gkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.ekee 60 
                  k   ++le+++k+ q+++e+k++e+ + q+  q++a+++ ++++
  CCE27431.1  82 IKGEVTRLETQIKETQDKMEKKKTEILQVQTSAQAEASNGgKSQQ 126
                 455667888888888888888888888888888888877755554 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   2.7     0.021        10       5      47 ..       6      48 ..       1      57 [. 0.54
   2 ?    8.7   2.5    0.0025       1.2      15      59 ..      80     124 ..      63     128 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.021
                ..CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHH CS
        GrpE  5 eeeeeeedeeeeleeeleelekevkelkekllrllaefenlrk 47
                 + +++ ++ ++l++el++  +  ++l+++ ++ +  f +++k
  CCE27431.1  6 AKLQALSEDYQKLQQELQDSVNSRQKLQSQQQENAGVFREFEK 48
                3344455555555555555555555555555555555555555 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0025
                 CCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHH CS
        GrpE  15 eeleeeleelekevkelkekllrllaefenlrkrtekekeeakkf 59 
                 +  + e+++le+++ke ++k+++++ e+ +++  ++ e+++  k+
  CCE27431.1  80 DFIKGEVTRLETQIKETQDKMEKKKTEILQVQTSAQAEASNGGKS 124
                 445667999*********************999999998876655 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.4     0.029        15      29      81 ..       2      50 ..       1      55 [. 0.75
   2 ?    6.0   0.6     0.029        15      37      78 ..      74     115 ..      59     121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.029
      DUF948 29 deaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlg 81
                  ++a ++ l ++ +++ +e++d ++  ++    ++++ ++   ++ ++++lg
  CCE27431.1  2 ADVQAKLQALSEDYQKLQQELQDSVNSRQK----LQSQQQENAGVFREFEKLG 50
                568899999999999999999999999999....5555555555555555555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.029
      DUF948  37 elekqvdpilkevedllakvnelledvneklekvdplteava 78 
                 +++ ++d i  ev++l ++++e+++ +++k  ++ ++ ++++
  CCE27431.1  74 TVKGRLDFIKGEVTRLETQIKETQDKMEKKKTEILQVQTSAQ 115
                 567788889999999999999999999987777666655554 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   5.7      0.21     1e+02      53      93 ..       5      45 ..       1      59 [. 0.48
   2 ?   11.7   3.3   0.00026      0.13      37      95 ..      67     125 ..      59     129 .] 0.86

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.21
   Golgin_A5 53 kqerdllreelqklnqqieqlrtelqdleaqqqaeaeslre 93
                +++ ++l e+ qkl+q++++  +  q+l++qqq++a  +re
  CCE27431.1  5 QAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQENAGVFRE 45
                33344444445555555555444445555555444444443 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00026
   Golgin_A5  37 eglesstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreql 95 
                 +++e++ +++  ld +k e   l+ ++++++ ++e+ +te+ ++++++qaea++  + +
  CCE27431.1  67 DKVEAESTVKGRLDFIKGEVTRLETQIKETQDKMEKKKTEILQVQTSAQAEASNGGKSQ 125
                 456778889999***************************************98755544 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1      0.08        40      17      39 ..       2      24 ..       1      27 [. 0.82
   2 ?    2.6   0.3      0.38   1.9e+02      14      41 ..      27      59 ..      18      60 .. 0.64
   3 ?    5.9   1.4     0.035        17       2      34 ..      79     111 ..      72     116 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.08
   FlaC_arch 17 etvkkeneelsksveelkenVkd 39
                + v+++++ ls++ ++l+++ +d
  CCE27431.1  2 ADVQAKLQALSEDYQKLQQELQD 24
                67899999999999999998876 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.38
   FlaC_arch 14 t...eletvkkeneelsksveel..kenVkdll 41
                    +l++ ++en  +  + e+l  +e++ +l+
  CCE27431.1 27 NsrqKLQSQQQENAGVFREFEKLgeDETIYKLM 59
                223389999999999999999884445666665 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.035
   FlaC_arch   2 idelEnklsklsteletvkkeneelsksveelk 34 
                 +d +  ++ +l+t+++  ++++e+ ++++ +++
  CCE27431.1  79 LDFIKGEVTRLETQIKETQDKMEKKKTEILQVQ 111
                 566677788888888888888887777776555 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  12.0    0.0083       4.1     437     554 ..       5     115 ..       2     128 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0083
    Macoilin 437 kselqqlkkendllqtklhelvsakqkdkqtlqqlekrLkeekearaslekqLaeekkrkkeeeetaaravalaaasrsecteslkskkreleaeikkL 535
                 +++lq+l +++++lq+ l++ v+++qk        + + +e++    + ek+ ++e  +k +     ++ +  a ++ + + + +k + + le++ik  
  CCE27431.1   5 QAKLQALSEDYQKLQQELQDSVNSRQKL-------QSQQQENAGVFREFEKLGEDETIYKLMGPVLMKQDKVEAESTVKGRLDFIKGEVTRLETQIKET 96 
                 4455555555555555555555555542.......2222344444455677777777777777777777777777777777777777777777777777 PP

    Macoilin 536 ekelklkeeqirelelkvq 554
                 + ++  k+ +i ++++ +q
  CCE27431.1  97 QDKMEKKKTEILQVQTSAQ 115
                 7777777777766665555 PP

>> Com_YlbF  Control of competence regulator ComK, YlbF/YmcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   6.6    0.0054       2.7      32      66 ..       6      39 ..       2      49 .. 0.77
   2 ?    4.4   4.3      0.12        58      26      76 ..      47     103 ..      42     128 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0054
                HHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHH CS
    Com_YlbF 32 eelqklikefkklqkelqekqmkgeelkeeekkel 66
                ++lq+l ++++klq+elq+  ++ ++l+ ++++  
  CCE27431.1  6 AKLQALSEDYQKLQQELQDSVNSRQKLQSQQQE-N 39
                689****************88888888888774.3 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.12
                 HHHHCSHHHHHHHHHHHHHHHHHHHHHHTT.......----HHHHHHHHHHHHHHHTS CS
    Com_YlbF  26 ealeedeelqklikefkklqkelqekqmkg.......eelkeeekkelqelkeeldkn 76 
                 e+l ede ++kl+  + ++q++++++   +        e++  e  +++e +++++k 
  CCE27431.1  47 EKLGEDETIYKLMGPVLMKQDKVEAESTVKgrldfikGEVTRLET-QIKETQDKMEKK 103
                 678899999999999999999997755444477777633333333.444444444332 PP

>> Rho_Binding  Rho Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.1     0.047        23       4      54 ..       7      57 ..       2      59 .. 0.69
   2 ?    8.0   2.6    0.0098       4.9       7      37 ..      81     111 ..      75     121 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.047
  Rho_Binding  4 dvenlakekeelnkklkkleeelekakeeeeeieklkasyekqLktErlLK 54
                 +++ l+++ + l+++l++  ++ +k++++++e + +  ++ek  + E++ K
   CCE27431.1  7 KLQALSEDYQKLQQELQDSVNSRQKLQSQQQENAGVFREFEKLGEDETIYK 57
                 566777778888888877777777777555555555558888777777766 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0098
  Rho_Binding   7 nlakekeelnkklkkleeelekakeeeeeie 37 
                   ++ e + l+ ++k++++++ek+k+e  +++
   CCE27431.1  81 FIKGEVTRLETQIKETQDKMEKKKTEILQVQ 111
                  56779999***************95433333 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  15.4     0.017       8.7      38     136 ..       8     124 ..       3     129 .] 0.90

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.017
  Jnk-SapK_ap_N  38 LeslasrneeeeaeleelreeleqLeteyerekelrkrae..................eeleeiedqweeerkelqekveqleeenrelelkakna 115
                    L +l +++++ ++el++  + +++L++++++ +   +++e                  ++  e+e +++++   ++ +v++le++++e + k+++ 
     CCE27431.1   8 LQALSEDYQKLQQELQDSVNSRQKLQSQQQENAGVFREFEklgedetiyklmgpvlmkQDKVEAESTVKGRLDFIKGEVTRLETQIKETQDKMEKK 103
                    8889999**************************9999999******************9999****************************999999 PP

  Jnk-SapK_ap_N 116 adqlsrleekeaelkkeyskl 136
                    ++++ +++ + + + ++  k 
     CCE27431.1 104 KTEILQVQTSAQAEASNGGKS 124
                    998888888877766555544 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  17.3      0.11        54      93     177 ..       3     112 ..       1     116 [. 0.70

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.11
     UPF0242  93 elqeeeeeLkeeldakeeelerlkeenqqLqekleaiae.........................dfeelkleleeqLaekqellqeyqetieeqrsvle 166
                 ++q++ + L e +++ ++el+   +  q+Lq++ ++ a                          d  e    ++ +L+  +  +  ++ +i+e +  +e
  CCE27431.1   3 DVQAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQENAGvfrefeklgedetiyklmgpvlmkqDKVEAESTVKGRLDFIKGEVTRLETQIKETQDKME 101
                 677888888888888888888888888888888777766566666666666666666666555566666666667777777777788888888888888 PP

     UPF0242 167 krqdqieqLes 177
                 k++ +i q ++
  CCE27431.1 102 KKKTEILQVQT 112
                 88888877665 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1  11.0       0.4     2e+02      32     120 ..      10     109 ..       1     120 [. 0.41

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.4
                 CCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH...........HHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  32 dvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkd...........ndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiq 119
                  +++d +kl++el++  ns ++ ++  +e   + re +k  +d            ++   + +++++ +   +k ++++ e++i++ q+ +e+++ +i 
  CCE27431.1  10 ALSEDYQKLQQELQDSVNSRQKLQSQQQENAGVFREFEKLGEDetiyklmgpvlMKQDKVEAESTVKGRLDFIKGEVTRLETQIKETQDKMEKKKTEIL 108
                 333444444444444444444444444444444444444444333333332222111122223333334444444444444444444444444444444 PP

                 H CS
   Fib_alpha 120 k 120
                 +
  CCE27431.1 109 Q 109
                 4 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0  11.0       2.8   1.4e+03      13      47 ..       4      38 ..       1     124 [. 0.59

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 2.8
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA 13 leeqleelleeleelkeelaelleenaeLelenek 47
                ++ +l++l+e+ ++l++el++ ++  ++L+ ++++
  CCE27431.1  4 VQAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQE 38
                45556666666666666666666666666554332 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  17.0      0.13        66       8     107 ..       1     104 [.       1     112 [. 0.70

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.13
     DUF4200   8 mfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraral........kkaeeerklkkekeaeikklkaeietlkseiek 98 
                 m +vq +l+a  e++q+l+++l++  +  +k +++ +e++  f +f k  ++++++ l         k+e e+  k +    +  +k e+++l+++i++
  CCE27431.1   1 MADVQAKLQALSEDYQKLQQELQDSVNSRQKLQSQQQENAGVFREFEKLGEDETIYKLmgpvlmkqDKVEAESTVKGR----LDFIKGEVTRLETQIKE 95 
                 789****************************************************98622221111344444444444....33445555555555555 PP

     DUF4200  99 leekleeyk 107
                 +++k+e+ k
  CCE27431.1  96 TQDKMEKKK 104
                 555555443 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.1     0.043        21      13      50 ..       6      43 ..       2      78 .. 0.67
   2 ?    7.1   2.5     0.014       7.2      13      45 ..      84     116 ..      73     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.043
      CENP-H 13 sellklsqelrelqeeltevekenlrlkrknrelaael 50
                 +l++ls+++++lq+el++   ++ +l+ +++e a   
  CCE27431.1  6 AKLQALSEDYQKLQQELQDSVNSRQKLQSQQQENAGVF 43
                56778888888888888888888887777777766544 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.014
      CENP-H  13 sellklsqelrelqeeltevekenlrlkrknre 45 
                  e+ +l+++++e+q+++++ + e+l++++  + 
  CCE27431.1  84 GEVTRLETQIKETQDKMEKKKTEILQVQTSAQA 116
                 57889999****************999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3000  (0.167327); expected 358.6 (0.02)
Passed bias filter:                      849  (0.0473534); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 850.16
//
Query:       CCE27432.1  [L=1046]
Description: probable VPS4-vacuolar sorting protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-41  141.6   0.0    4.6e-41  140.3   0.0    1.7  1  AAA           ATPase family associated with various cellular 
    5.2e-24   84.0   0.1    1.6e-23   82.4   0.1    1.9  1  Vps4_C        Vps4 C terminal oligomerisation domain
    4.8e-17   61.8   4.0    1.7e-16   60.0   4.0    1.9  1  MIT           MIT (microtubule interacting and transport) dom
    1.4e-06   28.0   0.0    3.7e-06   26.6   0.0    1.7  1  AAA_lid_3     AAA+ lid domain
    2.4e-06   26.8   0.0      5e-06   25.8   0.0    1.5  1  RrnaAD        Ribosomal RNA adenine dimethylase
    5.3e-06   26.3   0.0    9.8e-06   25.4   0.0    1.4  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
    2.7e-05   23.5   0.0    5.2e-05   22.6   0.0    1.4  1  TIP49         TIP49 P-loop domain
    5.6e-05   23.6   0.6     0.0028   18.1   0.0    3.1  2  AAA_16        AAA ATPase domain
    0.00015   22.2   0.0       0.03   14.7   0.0    3.4  3  RNA_helicase  RNA helicase
    0.00015   21.5   0.0     0.0004   20.2   0.0    1.7  1  IstB_IS21     IstB-like ATP binding protein
    0.00025   21.1   0.0    0.00078   19.5   0.0    2.0  1  AAA_5         AAA domain (dynein-related subfamily)
    0.00028   20.9   0.0    0.00079   19.5   0.0    1.7  1  AAA_14        AAA domain
    0.00065   20.0   0.0      0.052   13.8   0.0    2.9  2  AAA_22        AAA domain
     0.0019   17.4   0.0     0.0063   15.7   0.0    1.8  1  DUF815        Protein of unknown function (DUF815)
     0.0024   17.6   1.2       0.02   14.5   0.2    2.8  3  PrkA          PrkA serine protein kinase C-terminal domain
     0.0025   18.4   0.0     0.0093   16.5   0.0    2.1  1  AAA_18        AAA domain
     0.0049   16.6   0.2      0.018   14.8   0.0    2.0  2  AAA_24        AAA domain
     0.0066   16.6   0.1      0.027   14.6   0.0    2.1  2  AAA_33        AAA domain
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.033   14.3   0.0    1.7  1  AAA_2         AAA domain (Cdc48 subfamily)
      0.055   13.0   0.2        1.1    8.9   0.1    2.7  3  AAA_25        AAA domain
      0.077   13.1   0.0       0.26   11.4   0.0    1.9  1  UBA_2         Ubiquitin associated domain (UBA)
      0.094   12.2   0.0       0.28   10.7   0.0    1.8  2  AAA_7         P-loop containing dynein motor region
      0.097   12.0   0.0       0.22   10.9   0.0    1.5  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.15   11.5   0.4       0.42   10.0   0.1    1.9  2  PhoH          PhoH-like protein
        1.4    8.6   7.5         35    4.0   0.0    3.3  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3   0.0   6.4e-44   4.6e-41       1     131 [.     164     292 ..     164     293 .. 0.98

  Alignments for each domain:
  == domain 1  score: 140.3 bits;  conditional E-value: 6.4e-44
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +llyGppGtGK++lakava+e++++f++is s+l+sk++gese+ +++lf+ a+e++ ps++fiDEidal++ r ++ese ++r+  ++l ++dgv ++
  CCE27432.1 164 ILLYGPPGTGKSYLAKAVATEANSTFFSISSSDLVSKWMGESERLVKALFSMARENK-PSVIFIDEIDALCGPRGEGESEASRRIKTEILVQMDGVGND 261
                 69******************************************************8.****************999********************** PP

                 SSTEEEEEEESSGGGSTHHHHSTTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallrgRfdrkieie 131
                 ++ ++v+gatn p++ld a++ +Rf+r+++i+
  CCE27432.1 262 SKGILVLGATNLPWQLDAAIR-RRFQRRVHIG 292
                 *********************.7*****9987 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.1   2.3e-26   1.6e-23       1      61 []     366     426 ..     366     426 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 2.3e-26
      Vps4_C   1 ltPCspgdpgaiemtwmdipsdkllePpvtlkDflkalkkarptVskeDLekheeFTkefG 61 
                 ltPCspgd+++iemt+  ++sd+l++P+vtlkDf+ al  ++ptVsk+D+ek++++T+efG
  CCE27432.1 366 LTPCSPGDADKIEMTYDGVNSDELMAPDVTLKDFKLALLDSHPTVSKDDVEKQIDWTNEFG 426
                 79**********************************************************9 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   4.0   2.3e-19   1.7e-16       2      65 .]       7      71 ..       7      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 2.3e-19
         MIT  2 dkAlelvkkAveeDnagnyeeAlelYkealelLlqalk.ekneerrellrekieeYleRaeeLke 65
                d+A++ v+kA+ +D a++y++A++lY +++el+++alk ekn++ + +++ek+++Yl+Rae+Lk+
  CCE27432.1  7 DRAIAEVQKAIAADHAKEYQKAFDLYMSSMELWVKALKwEKNKSLKGTMQEKMATYLDRAEKLKQ 71
                68************************************88***********************97 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   5.2e-09   3.7e-06       3      36 ..     318     351 ..     317     361 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 5.2e-09
   AAA_lid_3   3 dlkeLAerTeGySGADlaalcreAallAlrrgik 36 
                 d+  LA++++G+SG D+a++++ A ++ +r  ++
  CCE27432.1 318 DYGTLASMSDGFSGSDIANVVQHALMRPVRKILQ 351
                 6678*************************98665 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0     7e-09     5e-06      30     156 ..     541     698 ..     521     769 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 7e-09
                 TTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHHHHCTTTCCCCEEEEEEE--TTTHHHHHHHHHH.. CS
      RrnaAD  30 ekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkklskdeklkvvhqDflkfetpeevtekdsihqeflvvanlPyeistqlvkqlle.. 124
                     +l++ pG+G+ +++L  ++  +++ ++ ld +++k+  + l  ++++k++ + +  ++   e +e   + q+ l  +++P    t lv   ++  
  CCE27432.1 541 RGCDLLDLNPGPGVWSRKLHGYLqpRNHIMMDLDAEIYKPFLDDLLAKKNVKLIRKSGFVWKDLLETIETHLPDQRQLPLGATPRRNDTLLVTANMSmy 639
                 56679**************************************9*****************99999999666666666666666666666666666666 PP

                 ............................GGGGCEEEEEEEEEHHHHHHHH--TTSTT-SH CS
      RrnaAD 125 ............................esrfglvkmllwlqkefarrllarpgskkrsr 156
                                              +r glv+m++w+  e  r+l+ r   ++r++
  CCE27432.1 640 pkkafsafnslgtmvlyqmlmsirtstlFQRYGLVRMMIWINDEEKRKLIPR-VIHRRGK 698
                 66666666666677777777788889999999*****************986.3455554 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.4e-08   9.8e-06      29     117 ..     157     253 ..     126     291 .. 0.69

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.4e-08
      RuvB_N  29 reealdhvllyGpPGlGkttlakiiakelgvkl.kitsgPvlek....agdlaalltnleek...dvlfideihrlsraveevlysamedfrldivi 117
                 +++a   +llyGpPG Gk+ lak +a+e ++++  i+s+  ++k    +  l+  l ++ ++    v+fidei  l     e    a   ++ +i++
  CCE27432.1 157 KRQAWKGILLYGPPGTGKSYLAKAVATEANSTFfSISSSDLVSKwmgeSERLVKALFSMAREnkpSVIFIDEIDALCGPRGEGESEASRRIKTEILV 253
                 5677888**********************9986256666666653222445666666654431226*******998776666666666666666655 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   7.2e-08   5.2e-05      41     103 ..     152     212 ..     112     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 7.2e-08
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  41 elikekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqal 103
                  l + k+ a +++Ll Gp+gtGk+ la a++ e +    f ++s+s++ s  +  +e l++al
  CCE27432.1 152 TLFQGKRQAWKGILLYGPPGTGKSYLAKAVATEAN--STFFSISSSDLVSKWMGESERLVKAL 212
                 57899999************************987..6799****************999886 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.9e-06    0.0028      25      61 ..     162     195 ..     152     252 .. 0.71
   2 ?   -0.2   0.1       1.6   1.1e+03      59     122 ..     812     872 ..     791     889 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.9e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcd 61 
                   +ll+G++G+GKs l+++++++++ +   f++    
  CCE27432.1 162 KGILLYGPPGTGKSYLAKAVATEANST---FFSISSS 195
                 689******************988877...4444444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.6
      AAA_16  59 kcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllel 122
                 + +q+  +++ ++++++l +++ + ql++  e ++ +a++e+  ++ + +++l+  +++ +++ 
  CCE27432.1 812 RDKQY--STHCLQYLELLQERDHILQLASS-EGSSSAAFQEANSAWNERIDALTKNGRNEFNAI 872
                 33333..55567778888777777777766.444788888888888888888888888777654 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.2e-05      0.03       1      27 [.     164     190 ..     164     220 .. 0.82
   2 ?    2.9   0.0      0.19   1.4e+02       3      26 ..     232     255 ..     231     273 .. 0.84
   3 ?   -1.4   0.0       4.2     3e+03      43      60 ..     558     575 ..     546     586 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.2e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklk 27 
                   i+lyGp+g+GKS+lak +a++  +++ 
    CCE27432.1 164 ILLYGPPGTGKSYLAKAVATEANSTFF 190
                   789**************9999887763 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.19
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l+Gp+geG S +++++ +++l ++
    CCE27432.1 232 LCGPRGEGESEASRRIKTEILVQM 255
                   79**************99999777 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 4.2
  RNA_helicase  43 fwdgYtgqevvvidDfgq 60 
                    ++gY ++  +++ D+ +
    CCE27432.1 558 KLHGYLQPRNHIMMDLDA 575
                   5689***********987 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.5e-07    0.0004      48     117 ..     162     229 ..     157     239 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.5e-07
   IstB_IS21  48 enivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkra.rrdgklaralkrllkvdllilDdl 117
                 ++i+l Gp+G+GKs+la a+++ea  + +s   ++ +dLv++   + +r  k+   ++r  k++++ +D++
  CCE27432.1 162 KGILLYGPPGTGKSYLAKAVATEANSTFFS---ISSSDLVSKWMGEsERLVKALFSMARENKPSVIFIDEI 229
                 5799****************9988655444...46677777654330344455555666667777777776 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.1e-06   0.00078       2      76 ..     164     231 ..     163     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.1e-06
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEver 76 
                 +lL GppGtgKs la+ +a   n++++       ++++dl+ ++    g+ ++  ++l   ar  +++++++DE++ 
  CCE27432.1 164 ILLYGPPGTGKSYLAKAVATEANSTFFS------ISSSDLVSKWM---GESERLVKALFSMARenKPSVIFIDEIDA 231
                 89****************9999999985......57899**9999...5555555666667777899*******985 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.1e-06   0.00079       5      75 ..     164     231 ..     161     253 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.1e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqe 75 
                 +++ G+  +GK++l+k ++ e     + ++ i+  d   k + ++e+l ++++++++e+k +++f+DEi  
  CCE27432.1 164 ILLYGPPGTGKSYLAKAVATEAN---STFFSISSSDLVSKWMGESERLVKALFSMARENKPSVIFIDEIDA 231
                 7899***************8888...9999999999999888888899999999977789*********76 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   7.2e-05     0.052       8      30 ..     164     186 ..     160     202 .. 0.86
   2 ?    2.4   0.0      0.25   1.8e+02      75     104 ..     205     233 ..     195     259 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.2e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqld 30 
                 ++++G++GtGK++l++ ++ +++
  CCE27432.1 164 ILLYGPPGTGKSYLAKAVATEAN 186
                 799***************99874 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.25
      AAA_22  75 seellealeqalraravielliiDEaqhlr 104
                 se+l++al   +r+ +  +++ iDE++ l 
  CCE27432.1 205 SERLVKALFSMARENKP-SVIFIDEIDALC 233
                 56777777777777777.9********995 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.7e-06    0.0063      21     114 ..     121     227 ..     106     230 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.7e-06
      DUF815  21 evdevklddLvgidkqkealvente......qflegl.pa.nnvLLwGarGtGKSslvkallneyaeeg..Lrlievekedlkelpklvellr...erp 106
                 e  +v+++d+ g++  ke+l+e +       ++ +g+ +a + +LL+G  GtGKS l ka+ +e++++   +   ++  + + e ++lv++l    +++
  CCE27432.1 121 ERPNVRWEDIAGLEGAKETLKEAVVlpikfpTLFQGKrQAwKGILLYGPPGTGKSYLAKAVATEANSTFfsISSSDLVSKWMGESERLVKALFsmaREN 219
                 5567888899999999988888764222222334443134378*********************99987332223344444444444444443111445 PP

      DUF815 107 erfilfvD 114
                 +  ++f+D
  CCE27432.1 220 KPSVIFID 227
                 55666666 PP

>> PrkA  PrkA serine protein kinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   2.8e-05      0.02      98     160 ..       4      68 ..       1      85 [. 0.79
   2 ?   -0.1   0.0      0.82   5.8e+02      35     127 ..     327     419 ..     319     447 .. 0.69
   3 ?   -2.6   0.0       4.8   3.5e+03     167     188 ..     520     541 ..     505     544 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.8e-05
        PrkA  98 eydervkkevqeAllyseeeqieelvenYldhveayikkekvkdpiT..geelepderflrsiEe 160
                  +++r+ +evq+A++ +  +++++ ++ Y++  e ++k  k + +    g ++e  +++l + E+
  CCE27432.1   4 NFRDRAIAEVQKAIAADHAKEYQKAFDLYMSSMELWVKALKWEKNKSlkGTMQEKMATYLDRAEK 68 
                 6899*********************************9887655443225555666777777776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.82
        PrkA  35 sGispRyvikilsealssseakeekcinpldvlealeeglkeheviseeerekyleflevvre...eydervkkevqeAllyseeeqieelvenYl 127
                 +G+s+ ++ +++++al+    +++k++++++   ++++g +  +  s  + +k +   + v     +  +++ k+ + All s  ++ +++ve+ +
  CCE27432.1 327 DGFSGSDIANVVQHALM---RPVRKILQATHFKAVMKDGKRMLTPCSPGDADKIEMTYDGVNSdelMAPDVTLKDFKLALLDSHPTVSKDDVEKQI 419
                 79999**********98...4679999999999999888777666665555555555443322111344566666666666666666666666555 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.8
        PrkA 167 eakkdFRrevikelaasalare 188
                  + + +R++++k+++ s  +++
  CCE27432.1 520 AQTQRYRNDIVKYIGPSIERHR 541
                 4678899999999976665555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-05    0.0093       1      37 [.     164     203 ..     164     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...gvnlrdvakengl 37 
                 Ill G+pG+GK+ lak+++ + ++   ++ ++d++++ + 
  CCE27432.1 164 ILLYGPPGTGKSYLAKAVATEANStffSISSSDLVSKWMG 203
                 99****************9997667897777777766444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       5.5     4e+03      93     119 ..      18      44 ..       5      81 .. 0.65
   2 !   14.8   0.0   2.5e-05     0.018       5      77 ..     164     232 ..     161     245 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.5
      AAA_24  93 eskedkgdgkGygelaeefrrllkklq 119
                      k ++k+++++   +  ++k+l+
  CCE27432.1  18 AADHAKEYQKAFDLYMSSMELWVKALK 44 
                 334457888899999999988888875 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.5e-05
      AAA_24   5 iliyGpsgiGKTtlakel..gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDtidel 77 
                 il+yGp+g+GK++lak    + +  f+ +   ++ +  + ++     e +++++ + a+ +++ ++++iD id l
  CCE27432.1 164 ILLYGPPGTGKSYLAKAVatEANSTFFSISS-SDLVSKWMGE----SERLVKALFSMAR-ENKPSVIFIDEIDAL 232
                 89**************997655555555544.3344444444....2233333333322.233477777777766 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.8e-05     0.027       2      39 ..     164     203 ..     164     249 .. 0.82
   2 ?   -2.3   0.1       6.2   4.4e+03      28      77 ..     827     875 ..     801     881 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.8e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfg 39 
                 +ll G+pG+GKs+la+ ++ +    ++ +ss +l ++  g
  CCE27432.1 164 ILLYGPPGTGKSYLAKAVATEANstFFSISSSDLVSKWMG 203
                 6789**************9888888888888886655444 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.2
      AAA_33  28 lssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvilda 77 
                 l + + + +l+ ++  s    +++++ +++++ + ++k+ + ++n+i da
  CCE27432.1 827 LQERDHILQLASSEGSSSAAFQEANSAWNERI-DALTKNGRNEFNAIRDA 875
                 44445555566666666667777777777777.66667777777777665 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.5e-05     0.033       6      92 ..     164     245 ..     161     267 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.5e-05
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----.--------- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk.essgadvSr 92 
                 ill gp g+Gk++laka+a   +     ++  +  s+l      e+e+lv+ l      + + ++  ++++DEid  +   ++ +++ Sr
  CCE27432.1 164 ILLYGPPGTGKSYLAKAVATEANS----TFFSISSSDLVSkwMGESERLVKALF----SMARENKPSVIFIDEIDALCGPrGEGESEASR 245
                 7999*****************994....78888888887722234444444444....344455566********998765666666666 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1    0.0015       1.1      34      54 ..     162     182 ..     151     191 .. 0.80
   2 ?    0.5   0.0      0.55     4e+02     130     167 ..     209     245 ..     179     255 .. 0.77
   3 ?   -1.8   0.0       2.7   1.9e+03      45      97 ..     697     750 ..     668     793 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0015
      AAA_25  34 elallaGapgtGKttlaldla 54 
                 + +ll+G+pgtGK+ la  +a
  CCE27432.1 162 KGILLYGPPGTGKSYLAKAVA 182
                 5589************97766 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.55
      AAA_25 130 vdaleaaieevegvrlvviDplsralggdensnsdvga 167
                 v+al   ++e +++ ++ iD +++++g   + +s++++
  CCE27432.1 209 VKALFSMARE-NKPSVIFIDEIDALCGPRGEGESEASR 245
                 5556666677.67**************97777776643 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.7
      AAA_25  45 GKttlaldlalava...tGkpwlg..pvapeqgkVlyvsaEdsedelrrRlravgeal 97 
                 GK+++ ++l++++     G +  g  +   +  +  +++ E +  ++ +R++ +g ++
  CCE27432.1 697 GKSVFETELSVEWIhevAGVQT-GvqD--RTALRDEWIDIESTS-QTMQRMQTAGLTM 750
                 6777777777776643333322.3222..255555577777777.6667777777777 PP

>> UBA_2  Ubiquitin associated domain (UBA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00036      0.26      21      44 ..     858     880 ..     854     881 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00036
       UBA_2  21 ieaLekaekskssneIkDAYlLmk 44 
                 i+aL k+ ++ + n+I+DAY + +
  CCE27432.1 858 IDALTKNGRN-EFNAIRDAYHIFR 880
                 89********.*********9976 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00039      0.28      32      63 ..     160     191 ..     148     232 .. 0.66
   2 ?   -3.6   0.0       9.2   6.6e+03     149     174 ..     265     290 ..     263     291 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00039
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkldkekyl 63 
                 + k +ll+Gp GtGK+ ++k + ++ +++ ++
  CCE27432.1 160 AWKGILLYGPPGTGKSYLAKAVATEANSTFFS 191
                 55789***************999888833332 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 9.2
       AAA_7 149 vqlvaamgppgggrneitpRllrhfn 174
                 + +++a + p +    i  R++r+++
  CCE27432.1 265 ILVLGATNLPWQLDAAIRRRFQRRVH 290
                 6788999999999999*******976 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00031      0.22      25      43 ..     164     182 ..     160     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00031
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +ll+GppG+GK+ lak+++
    CCE27432.1 164 ILLYGPPGTGKSYLAKAVA 182
                   89*************9976 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.9   2.8e+03      68      91 ..      51      73 ..      46      81 .. 0.74
   2 ?   10.0   0.1   0.00059      0.42      23      43 ..     165     185 ..     159     191 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.9
                S---------TTTHHHHHHHTTTS CS
        PhoH 68 lpgdleekvdpylrplydaLkdll 91
                l+g+++ek++ yl    ++Lk++l
  CCE27432.1 51 LKGTMQEKMATYLDR-AEKLKQFL 73
                7999******99976.34555555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00059
                 EEE--TTSSTTHHHHHHHHHH CS
        PhoH  23 faiGpaGtGKtylavalavea 43 
                    Gp GtGK+yla a+a ea
  CCE27432.1 165 LLYGPPGTGKSYLAKAVATEA 185
                 578**************9887 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.09        64       3      30 ..     165     186 ..     164     208 .. 0.74
   2 ?    4.0   0.0     0.049        35     243     267 ..     207     230 ..     202     231 .. 0.88
   3 ?    1.4   3.4      0.32   2.3e+02      48     129 ..     432     507 ..     396     536 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.09
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdve 30 
                 +l+Gp g+GKS+L +a       +++++
  CCE27432.1 165 LLYGPPGTGKSYLAKAV------ATEAN 186
                 79*************98......44444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.049
      AAA_21 243 rllalltallralkkgsllliDEpE 267
                 rl + l +++r +k+ s+++iDE++
  CCE27432.1 207 RLVKALFSMARENKP-SVIFIDEID 230
                 566889999999999.********8 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.32
      AAA_21  48 lldlydpeipfefeieeflsqgvryryglrlersqveeklssvetllesgllldkrsleeedvfnpeargirggvsvfslke 129
                   d++d +  ++ +ie+ ++++ r++ g    +++       +++ +++++ +d+  + ++d+   ++++i +++ ++ ++e
  CCE27432.1 432 DEDRIDRDRIDRDRIEKDHISKGRIDKGRIDRDRIE------KDRIEKDRIDKDRIGKGRIDKGHIDKDYIQKDRIEKDRIE 507
                 333333333334444444444444444433333333......7777777777777777777777777777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1046 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 6733.07
//
Query:       CCE27433.1  [L=676]
Description: related to capsular associated protein (CAP10) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-16   59.4   1.1      5e-12   45.4   0.0    3.1  3  Glyco_transf_90  Glycosyl transferase family 90


Domain annotation for each model (and alignments):
>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   1.1e-05       0.2       8      94 ..     175     251 ..     169     265 .. 0.74
   2 ?    0.0   0.1     0.017   3.1e+02     151     168 ..     419     436 ..     381     442 .. 0.88
   3 !   45.4   0.0   2.8e-16     5e-12     204     324 ..     527     650 ..     505     665 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 1.1e-05
  Glyco_transf_90   8 dyfrvieeDLkpwretgitreaverakrkalfrlviingrvyvekykksvqtrdvftiwgilqLlrkypgklpDlelmfncdDrPvv 94 
                      ++f +i +DL+p+         + r  ++ ++ + i ng     k       +d f +   l+++r++   lpD++l +n +D P +
       CCE27433.1 175 SFFDQIYHDLEPFWG--ADPAPMRREASQFEMTINIRNGV---AK-----AGSDWFWTKVWLNMTRTVEHLLPDMDLALNAMDEPRI 251
                      678888888888876..44555555555555555555553...33.....345678888889***********************87 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.017
  Glyco_transf_90 151 kkvkweerepyaywkGnp 168
                      +  +w +++ +a w+G  
       CCE27433.1 419 HGIEWRNKRDTAIWRGVA 436
                      5689***********975 PP

  == domain 3  score: 45.4 bits;  conditional E-value: 2.8e-16
  Glyco_transf_90 204 gvkessledqckhkYkiyieGvaasvsekyilacdslvllvk.peyydffsreLkplehYvPiksk..dklrdlkeavdwg..nahdekaqeia 292
                      +++ +++++q+  k+   i+G   s+s +y+   +s  l +k + + ++  + L+p++h+vP++s+  d    +++ + +   nahd+ a++ia
       CCE27433.1 527 TTEGVKMTQQFDSKFLPDIDGN--SFSGRYLGFLRSTSLPIKaTIFREWHDSRLVPWKHFVPMDSRflDYFGIMQYFLGYQgrNAHDAAAEKIA 618
                      556789999************7..677778877777777655268******************9952233566788887754499********* PP

  Glyco_transf_90 293 eegseFireeLkmddvydYmfhLlteYakllk 324
                       eg+e++++ L+ +d+  Y ++Ll eYa+++ 
       CCE27433.1 619 TEGKEWAEKVLRKEDMSVYVLRLLLEYARVMD 650
                      ****************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4663.77
//
Query:       CCE27434.1  [L=466]
Description: uncharacterized protein CPUR_00908 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3494.72
//
Query:       CCE27435.1  [L=253]
Description: uncharacterized protein CPUR_00909 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-53  180.8   0.2    2.4e-27   96.3   0.0    2.0  2  DASH_Spc34  DASH complex subunit Spc34
  ------ inclusion threshold ------
      0.019   13.9   1.1      0.027   13.4   1.1    1.2  1  Spc7        Spc7 kinetochore protein
       0.47    9.9   2.4       0.71    9.3   2.4    1.3  1  CAP_N       Adenylate cyclase associated (CAP) N terminal
       0.65   10.2   5.2        1.6    8.9   5.2    1.6  1  DUF2407_C   DUF2407 C-terminal domain
        1.1    8.5   3.8        1.5    8.1   3.8    1.1  1  DUF4407     Domain of unknown function (DUF4407)
        5.8    5.9   6.4         11    5.0   6.4    1.4  1  DUF3402     Domain of unknown function (DUF3402)


Domain annotation for each model (and alignments):
>> DASH_Spc34  DASH complex subunit Spc34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   8.6e-27   2.6e-23       1      55 [.       4      58 ..       4      74 .. 0.91
   2 !   96.3   0.0   8.1e-31   2.4e-27     115     253 ..      76     234 ..      61     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 8.6e-27
  DASH_Spc34  1 LdscLeeikqSveSisslkFkpPgIFtNAlvkkddItkLirDtepeeeaLfkidk 55
                L+ +Le+i++S+++i+ l+F+pP+IFtNAl++++dIt+LirD+ep+e+aLf++++
  CCE27435.1  4 LSGHLEQIASSCQGIDALPFPPPKIFTNALLSNHDITTLIRDAEPHEQALFSVPP 58
                788**************************************************98 PP

  == domain 2  score: 96.3 bits;  conditional E-value: 8.1e-31
  DASH_Spc34 115 sdkqirqlllalqngsvttgedsgsssekanrrktafve...................dfdvelllkvleelltkyplleakekieelreeYeelseei 194
                 +++++rq+++++++g+vttg+ +    +   rr+ta+++                   d+dve ll+++e+l+ +y+l++a+++i +lr++Y++ ++++
  CCE27435.1  76 KSSNRRQTVFNVASGEVTTGPATRGVAN--PRRHTAVAAvlggemhsqlrkgetdrkgDVDVEILLRGAEKLCGVYELPGARDQIAALRNQYRNGKNTL 172
                 67899******************86444..789999999************************************************************ PP

  DASH_Spc34 195 eeleaeiaeQkkqLeaqnknesessseddsesetsk...skdvdelirkEeeeIeeLerklk 253
                 +++ea++aeQ++qL+++nk   e++++dd++  + +   ++++++++r+Ee e +e+e+k +
  CCE27435.1 173 AYYEAKVAEQNEQLAGMNKGWMEEEEDDDDDATGVDdesDVWTEDDLRREETEAREMEAKRR 234
                 *******************887777666655554446679******************9866 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.1     9e-06     0.027     199     281 ..     149     232 ..     137     246 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9e-06
        Spc7 199 eeLeelreelaelkaeieekkkelaelqeqleeleekieelkeq.kseleeeiaeaervleeckgwsesevsrlkeevkaleel 281
                  eL  +r+++a+l +++++ k+ la  +++++e++e+++ +++  ++e e++   a  v +e   w+e++++r ++e +++e +
  CCE27435.1 149 YELPGARDQIAALRNQYRNGKNTLAYYEAKVAEQNEQLAGMNKGwMEEEEDDDDDATGVDDESDVWTEDDLRREETEAREMEAK 232
                 588899*********************************9987626777778899*******************9999999865 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.4   0.00024      0.71     249     281 ..      55      86 ..      24      96 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00024
                 ..XXXXXXXX.....XXXXXXXXXXXXXXXXXX CS
       CAP_N 249 pPpPpPppasvfeeesaaasasaaaggmsavFa 281
                   pPpP p+ ++++++ +++++++++ ++ vF+
  CCE27435.1  55 SVPPPP-PPVTQSSRNIEPTSPKSSNRRQTVFN 86 
                 223333.33445677778999999*******97 PP

>> DUF2407_C  DUF2407 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   5.2   0.00053       1.6      14      80 ..     156     222 ..     154     246 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00053
   DUF2407_C  14 eeieaLRsqFrsiygseetpdtmpsdleeeeeeelreLEerWidstanaeeaae.aeeegeaakeee...n 80 
                 + i+aLR+q+r+ +++    ++   +   e++e+l  +   W+++++++++ a+  + e+   +e++   +
  CCE27435.1 156 DQIAALRNQYRNGKNTLAYYEA---K-VAEQNEQLAGMNKGWMEEEEDDDDDATgVDDESDVWTEDDlrrE 222
                 689*********8885444443...3.344779*************9777666643333333333324442 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.8   0.00051       1.5     118     205 ..     156     246 ..     149     252 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00051
     DUF4407 118 eeakelkeqlaaa......ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkak 205
                 +++++l++q+++       ++a++ae ++q+a +++   + e++ d+  + +++e d  + +     ++++++a+e +a+  ++qa+l +++++
  CCE27435.1 156 DQIAALRNQYRNGkntlayYEAKVAEQNEQLAGMNKGWMEEEEDDDDDATGVDDESDVWTED---DLRREETEAREMEAKRRDLQARLRQMETD 246
                 56667777777777777778888888888888888888888888888888888888863333...48889999999999999999999888765 PP

>> DUF3402  Domain of unknown function (DUF3402)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.4    0.0036        11      22      82 ..     177     237 ..     166     247 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0036
     DUF3402  22 rqlweerekflkfergweeddeeedddleeltleekeeeeeevdegpkkeelseeekkrle 82 
                  ++ e+ e++  +++gw e++e++ddd+  ++ e++ ++e + + +++++++ e +++ l+
  CCE27435.1 177 AKVAEQNEQLAGMNKGWMEEEEDDDDDATGVDDESDVWTEDDLRREETEAREMEAKRRDLQ 237
                 57789999999*********99999999999999888866666666666655555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1185  (0.066094); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 1889.44
//
Query:       CCE27436.1  [L=393]
Description: uncharacterized protein CPUR_00910 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-06   27.3  12.7      7e-06   26.3  12.7    1.6  1  zf-RING_2    Ring finger domain
    2.7e-05   23.9   7.8    5.9e-05   22.9   7.8    1.6  1  zf-C3HC4     Zinc finger, C3HC4 type (RING finger)
     0.0005   19.9  12.4     0.0005   19.9  12.4    1.8  2  zf-C3HC4_2   Zinc finger, C3HC4 type (RING finger)
     0.0012   18.6   8.8      0.002   18.0   8.8    1.4  1  zf-C3HC4_3   Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.025   14.9  10.6      0.078   13.3  10.6    1.8  1  zf-rbx1      RING-H2 zinc finger domain
        5.9    6.8  10.4        2.3    8.1   7.6    1.7  2  Prok-RING_4  Prokaryotic RING finger family 4


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3  12.7   2.3e-09     7e-06       2      44 .]      38      79 ..      37      79 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.3e-09
   zf-RING_2  2 eCpICleelssadsvlllpCgHv.fhreClerwlrssstCPlCr 44
                 C+ICl+ ++  + + + pCgH+ f++ C+++wl + ++CPlC+
  CCE27436.1 38 CCVICLDIVT--EPCKAFPCGHHnFDYLCVSNWLFEVPRCPLCK 79
                6****97775..5555569***99*******************7 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   7.8     2e-08   5.9e-05       1      41 []      39      78 ..      39      78 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2e-08
                -TTT-S--SS-E.E-TTS--.B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepnelleCkHs.fCskCirkilksrkkvkCPlC 41
                C iCl+ ++ep+++ +C+H  f + C++++l   +   CPlC
  CCE27436.1 39 CVICLDIVTEPCKAFPCGHHnFDYLCVSNWLF--EVPRCPLC 78
                9*****************988***********..6677**** PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9  12.4   1.7e-07    0.0005       2      40 .]      39      78 ..      38      78 .. 0.95
   2 ?   -3.2   0.1       2.7     8e+03      20      24 ..     192     196 ..     191     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.7e-07
  zf-C3HC4_2  2 CpiCldmlkdpsvvtpCgH.vfCqkCilrsLeekneCPlC 40
                C iCld   +p   +pCgH  f + C+  +L e  +CPlC
  CCE27436.1 39 CVICLDIVTEPCKAFPCGHhNFDYLCVSNWLFEVPRCPLC 78
                *****************963799***************** PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.7
  zf-C3HC4_2  20 HvfCq 24 
                 H fC 
  CCE27436.1 192 HMFCT 196
                 99**7 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   8.8   6.6e-07     0.002       3      49 ..      37      84 ..      35      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 6.6e-07
                SB-TTTSSSBS-.EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B--E CS
  zf-C3HC4_3  3 eeCviClerprn.vvllpCgHlvlCeeCaekllkrkkkCpiCrrpiek 49
                ++CviCl+   + +   pCgH  + + C++++l + ++Cp+C++ + k
  CCE27436.1 37 DCCVICLDIVTEpCKAFPCGHHNFDYLCVSNWLFEVPRCPLCKARVVK 84
                79******755537788***************99*********98865 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  10.6   2.6e-05     0.078      11      55 .]      36      79 ..      32      79 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
     zf-rbx1 11 eeacieckapgdeecpvvlGeCg.HaFHlhCiskWlktrkvCPlcr 55
                 ++c+ c    +e c+     Cg H+F   C+s+Wl +  +CPlc+
  CCE27436.1 36 ADCCVICLDIVTEPCKAF--PCGhHNFDYLCVSNWLFEVPRCPLCK 79
                578888888877745444..476268*******************6 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.6   0.00078       2.3       1      40 [.      39      82 ..      39      86 .. 0.81
   2 ?   -3.1   0.0       2.5   7.6e+03      18      22 ..     192     196 ..     191     197 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00078
  Prok-RING_4  1 CvlCgeqekka.ilepCgHl.vCkeCfdskdls..sCPlCqrri 40
                 Cv+C    +++    pCgH  +   C +++ ++  +CPlC+ r+
   CCE27436.1 39 CVICLDIVTEPcKAFPCGHHnFDYLCVSNWLFEvpRCPLCKARV 82
                 888888755541567****99*********77777******997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.5
  Prok-RING_4  18 HlvCk 22 
                  H++C 
   CCE27436.1 192 HMFCT 196
                  9***7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2825.18
//
Query:       CCE27437.1  [L=500]
Description: uncharacterized protein CPUR_00911 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-95  321.7  19.1    1.5e-95  321.5  19.1    1.0  1  Drc1-Sld2  DNA replication and checkpoint protein
  ------ inclusion threshold ------
       0.21   12.0   1.6        7.9    6.9   0.1    2.6  2  V-SNARE    Vesicle transport v-SNARE protein N-terminus
       0.92    9.5   3.9        7.4    6.5   0.3    2.5  2  DUF3275    Protein of unknown function (DUF3275)


Domain annotation for each model (and alignments):
>> Drc1-Sld2  DNA replication and checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.5  19.1   2.4e-99   1.5e-95       2     450 .]      14     500 .]      13     500 .] 0.79

  Alignments for each domain:
  == domain 1  score: 321.5 bits;  conditional E-value: 2.4e-99
   Drc1-Sld2   2 sqLraelKeWEraFaakn.grkpsreDIKknpeIaakYkeYskLkakesqskkdkkpsksvkleerpkkrkhesteepkeeqknnststprkskkaiaa 99 
                 ++Lra+lK+WE ++a+++ g+kp+r+DIK+n eIa+kYk Y++++++   s+k ++psk   le r +kr++e             ++tp k++k  aa
  CCE27437.1  14 KDLRAQLKRWENEWAQTHdGKKPGRQDIKDNAEIAQKYKDYNRYRDIL--SGKIAPPSK---LEPRLRKRPSEPA----------PAETPPKRTKY-AA 96 
                 68**********************************************..666667666...9999999995555..........478******96.** PP

   Drc1-Sld2 100 TPskshpsevdpydsPsvlrrlfsPstkaalGPTPQrdGkvLgLFDllsespksspskskerkaslsgsav.....qtpskrr.aldinaeed..rtpa 190
                 TP+k+hp + + +++P++ r+lfsP+  + lGPTPQrdG+vLgLFDll+e    +ps +++ +a+  +s +     +tps+r  ++d  + e+  rtp+
  CCE27437.1  97 TPKKQHPYDDELMSTPTISRKLFSPAPVTFLGPTPQRDGRVLGLFDLLVEKELGTPSRTNNSRAQRTPSRAgvnglSTPSRRTgTHDPDSPEKlgRTPM 195
                 ***************************************************999999999888888888888999*******977777666669***** PP

   Drc1-Sld2 191 ssgkklllsslfatpttlreaesaknkkdkeasknsssskleseTPsflrrknsarlptvdeasefdlspsplrkpqrlvgkglsaivqelrdieeekl 289
                 ss ++ +l+ + ++++  +++ s++ +        ss skl+++TP+fl+r +    +tvde+    ++  plr p +++ +gls+iv++lr+++++ l
  CCE27437.1 196 SSSRRHMLDMFATPQK--KRRGSIEGN------TPSSISKLQFDTPAFLKRYS---RATVDENAM-FTDMTPLRLPTKPLVRGLSEIVASLRKVQDDVL 282
                 *********9988877..233444433......446688999***********...899999999.79999**************************** PP

   Drc1-Sld2 290 ddeldllremEaeeeqaeldd..................vedsqa................................seaeeg.............rvr 325
                 +d+l++l+emE+e+++  + +                  v                                     +    +             +++
  CCE27437.1 283 EDDLEALHEMENEAADMPKPTsassnakptppaapttasV----PasvpasvpasvlepdnegrpmllggfdteemyD----SahedgvdrhgnplPTF 373
                 ************9777777775555555555555555550....0555555555555433334444444444333341....04444688889999*** PP

   Drc1-Sld2 326 kkkgqkrttRrvkmkPvt...eeeeededekknsedeldklpetqrkae.klddelseredseededsdsdeeseseptakaksfke.kakk..kkkak 417
                 kkkgqkrttR+ ++kP++   + +   +d  ++++++ d++petq+ a  + d +        +d   +sd+e+ +   +kak++k+ k+k    kk  
  CCE27437.1 374 KKKGQKRTTRKANIKPTMkrrPTAVAHQDGSGDDDNDADAVPETQFSAGpDADGDY-------QDAPPNSDDEAPDGGDGKAKKAKNtKRKDgpVKKVA 465
                 ******************7777777778888889999*******999543233233.......344444444555555555554454344445332333 PP

   Drc1-Sld2 418 kkkvkkvstNyrrLKirnkgakgra..kgRfrrRR 450
                  k  + + +N++rLK+rn+g+kg++  ++RfrrRR
  CCE27437.1 466 RKVNELAHANFKRLKLRNRGTKGGPgvNSRFRRRR 500
                 344445555**********************9998 PP

>> V-SNARE  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.014        83      55      76 ..       5      26 ..       1      29 [. 0.88
   2 ?    6.9   0.1    0.0013       7.9      34      62 ..     282     310 ..     266     311 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.014
     V-SNARE 55 erasykaklreykselkklkke 76
                ++a y +k ++ +++lk++++e
  CCE27437.1  5 TKALYEEKTKDLRAQLKRWENE 26
                6889***************998 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0013
     V-SNARE  34 ldeaeelldqMelEvrnlpsserasykak 62 
                 l++  e l++Me E+ ++p+ + as +ak
  CCE27437.1 282 LEDDLEALHEMENEAADMPKPTSASSNAK 310
                 566679************88777766665 PP

>> DUF3275  Protein of unknown function (DUF3275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.3    0.0012       7.4     108     166 ..      83     141 ..      64     164 .. 0.81
   2 ?    3.7   0.3     0.009        54      69     127 ..     269     331 ..     219     343 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0012
     DUF3275 108 paaaapaapakaksspakaasskdplvdtepfGvdapapapvaaegktededaaLFGel 166
                  +a++p + +k  ++p+k+++  d+l++t ++ ++  +papv+  g t+++d  + G +
  CCE27437.1  83 APAETPPKRTKYAATPKKQHPYDDELMSTPTISRKLFSPAPVTFLGPTPQRDGRVLGLF 141
                 345677777777888****************************9999999998777754 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.009
     DUF3275  69 EiRAkl....egltlsgidklsrdearslalqevDPldeeaaqpaaaapaapakaksspakaa 127
                 Ei A+l    ++++ +++++l + e+++ ++ ++  + ++a+ +++aap+++++  s+pa + 
  CCE27437.1 269 EIVASLrkvqDDVLEDDLEALHEMENEAADMPKPTSASSNAKPTPPAAPTTASVPASVPASVP 331
                 555554111134444566666666666666666666666666677788888877777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3574.52
//
Query:       CCE27438.1  [L=384]
Description: probable saccharopine dehydrogenase (NAD,L-lysine-forming) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-19   69.9   0.0      4e-19   69.2   0.0    1.3  1  AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
     0.0079   15.5   0.0      0.025   13.9   0.0    1.5  1  AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   4.5e-23     4e-19       2     135 ..       9     145 ..       8     146 .. 0.88

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 4.5e-23
                  E---SSTT----SS-HHHHHHHHHTT-EEEEETTTTG...GGTC-HHHHHHTTEEEES.CHHHHCTTSSEEEESS--.CHCGGGS-TTCEEEEE--GG CS
  AlaDh_PNT_N   2 vpkEikagErRvaltPatvkkLvkaGhevlVesgaGe...gagfsdeeYeeaGaeive.saeevlaeadlilkVkepseeelellkegqtlisflhla 95 
                  +++E+k+ E+R  ++Pa +k+Lv+aG++v Ve+++ +    ++f+d+eYe+aGa++v+   +  +a + li+++ke+  +e   ++  + +++f+h++
   CCE27438.1   9 LRAEQKPFEHRS-FSPAVIKALVDAGYKVSVERSPSDpdfVRIFQDSEYEAAGASLVPtGVWPKAAPNTLIVGLKEI--PEEG-FSLTNDHLTFAHCY 102
                  57899999***5.9********************98766689***************944466666789********..6666.77777788899999 PP

                  ....CHHHHHHHHHHCTEEEEEGGG-BSSGCCGGGTHHHHHHHH CS
  AlaDh_PNT_N  96 ....anpellealaekgvtaialElvprisraqsldaLssmaei 135
                      ++ ++l ++ +++ t+++lE++++ s+++++ a++ +a++
   CCE27438.1 103 kkqaGWTQVLGRFVAGKSTLYDLEFLVD-STGRRISAFGFHAGF 145
                  88756***********************.8*********99986 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.7e-06     0.025      87     201 ..     249     374 ..     240     380 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-06
                  HHHHH-SEEEE---BTTSS---SC-HHHHHT.S-TTEEEEETTGG............GT-SBTT--TBBTTSEEE..EETTEEEEEBSTGGGGSHHHH CS
  AlaDh_PNT_C  87 eavkeadvvigtvlipGkkaPkLvteemvks.MkpgsVivDvAid............qGGnvetsrltthgepvv..eekgvvhygvanlpgavprta 169
                  e++++ d+   ++ +  ++ P  v++e +++  ++ sV++Dv++d               +++   +t + +     +     ++    lp+++pr+a
   CCE27438.1 249 EEIAQHDIFLNAIYLS-EPIPPFVNNELLSKpGRKLSVVIDVSCDttnphnpipiysINTTFD--SPTVAVNVKDdqNSTPLSVISIDHLPSMLPREA 343
                  6788888888887765.6777788888887625778*********554444333322112222..33333332220023357899************* PP

                  HHHHHHHHHHHHHHHCHHHTCCHHHCTSHHHH CS
  AlaDh_PNT_C 170 salltnntlpyleelladkglkkalkedealr 201
                  s+ +++ + + l+ l +d++ +++ ++ e+l 
   CCE27438.1 344 SESFSEGLRESLLLL-NDRKSARVWTDAEKLF 374
                  **************9.7777778888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2787.69
//
Query:       CCE27439.1  [L=482]
Description: uncharacterized protein CPUR_00913 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-56  189.8   0.0    4.2e-56  189.8   0.0    1.8  3  Folliculin  Vesicle coat protein involved in Golgi to plasma 


Domain annotation for each model (and alignments):
>> Folliculin  Vesicle coat protein involved in Golgi to plasma membrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.36   6.5e+03     125     126 ..      76      97 ..      52     132 .. 0.44
   2 ?   -3.2   0.4      0.37   6.6e+03     125     150 ..     218     245 ..     190     253 .. 0.47
   3 !  189.8   0.0   2.3e-60   4.2e-56       1     184 [.     261     475 ..     261     476 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.36
  Folliculin 125 a....................l 126
                 +                    +
  CCE27439.1  76 SvalkdvlrdlslgpsgsppaS 97 
                 1444444444444444444331 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.37
  Folliculin 125 a..lkadgsglsrregssfslskekylr 150
                     +++g +++r++++  s ++++y +
  CCE27439.1 218 DegESSHGVRFRRKQATPGSSQNTSYAS 245
                 1223334444444444444444444444 PP

  == domain 3  score: 189.8 bits;  conditional E-value: 2.3e-60
  Folliculin   1 vsYvStqePlsperysllrqaclrsLScEtlpr.........................asggpifFgDeaaGytlayiFrlkDvkARGkkRvYalials 74 
                 v+Y+S++ePl+p++++llr++clr+LS+E + r                          +ggpifFgD++aGyt+ y Fr++D +ARG+kR Ya++als
  CCE27439.1 261 VNYTSSHEPLQPDSFTLLRASCLRALSFEHTARppsswnltpspqldsfvttqspgcaVTGGPIFFGDAKAGYTTGYLFRIPDLHARGHKRLYAFLALS 359
                 58************************************************************************************************* PP

  Folliculin  75 tdkerlllkawsfiveafeklaaeiqalaeaelereskeeeassaassssa...................lkadgsglsrregssfslskekylrrsks 154
                 t+ker+++k++s++v+afe la++iq+laeae+er+s++++ +s     +                    ++++gs+++rr                +s
  CCE27439.1 360 THKERVAMKTFSLFVQAFEVLASWIQQLAEAEAERTSTNSSPRS---GVAYgvgaqpqphtsaldrsssgFMQGGSAFTRR----------AGYGPGTS 445
                 ************************************99555333...3333567888888766444444444444444444..........33344578 PP

  Folliculin 155 klkarsLaelvgdediFvelHawfvwlLke 184
                 +lkar+Lae+vg++d+F++lH++fv+lL +
  CCE27439.1 446 SLKARGLAEIVGQPDFFITLHSKFVELLFQ 475
                 999*************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3573.81
//
Query:       CCE27440.1  [L=504]
Description: probable 26S proteasome regulatory particle chain RPT3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-45  152.5   0.3    2.5e-44  150.9   0.0    2.0  1  AAA              ATPase family associated with various cellul
    2.3e-09   37.0   0.1    1.4e-08   34.6   0.0    2.3  2  Prot_ATP_ID_OB   Proteasomal ATPase OB C-terminal domain
    7.9e-09   35.6   0.4    2.9e-08   33.8   0.1    2.1  2  AAA_5            AAA domain (dynein-related subfamily)
    1.5e-07   31.7   0.0    3.1e-07   30.7   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
    1.9e-07   31.6   0.1    5.3e-05   23.7   0.0    3.0  3  AAA_16           AAA ATPase domain
    4.5e-06   26.0   0.0    1.2e-05   24.7   0.0    1.7  1  DUF815           Protein of unknown function (DUF815)
    7.3e-05   23.1   1.0       0.01   16.1   0.1    2.8  2  AAA_22           AAA domain
    0.00019   21.2   0.0    0.00041   20.1   0.0    1.6  1  AAA_lid_3        AAA+ lid domain
    0.00051   19.8   0.0     0.0014   18.4   0.0    1.7  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0012   19.1   0.0     0.0026   18.0   0.0    1.6  1  AAA_28           AAA domain
     0.0015   17.8   0.0     0.0029   16.8   0.0    1.4  1  TIP49            TIP49 P-loop domain
     0.0016   19.0   0.0     0.0042   17.6   0.0    1.7  1  AAA_18           AAA domain
     0.0017   17.9   0.1     0.0098   15.4   0.1    1.9  1  AAA_7            P-loop containing dynein motor region
     0.0019   18.5   0.0      0.004   17.5   0.0    1.5  1  RNA_helicase     RNA helicase
     0.0025   17.6   0.0     0.0054   16.5   0.0    1.6  1  AAA_30           AAA domain
     0.0039   17.2   0.0      0.014   15.4   0.0    1.9  2  AAA_14           AAA domain
      0.006   16.5   0.0      0.019   14.9   0.0    1.9  2  NTPase_1         NTPase
     0.0087   16.0   0.2       0.14   12.1   0.0    2.8  3  NACHT            NACHT domain
     0.0089   16.0   0.0      0.017   15.1   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0097   15.8   0.0      0.025   14.4   0.0    1.7  1  AAA_3            ATPase family associated with various cellul
  ------ inclusion threshold ------
       0.01   15.2   0.0      0.024   14.0   0.0    1.5  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.011   15.9   0.0      0.027   14.6   0.0    1.7  1  AAA_33           AAA domain
      0.017   14.5   0.0       0.69    9.3   0.0    2.3  2  TniB             Bacterial TniB protein
      0.021   14.6   0.1      0.055   13.2   0.0    1.8  1  IstB_IS21        IstB-like ATP binding protein
      0.029   14.1   0.2      0.067   12.9   0.2    1.6  1  AAA_24           AAA domain
      0.048   13.6   0.6       0.39   10.6   0.0    2.4  3  ATPase_2         ATPase domain predominantly from Archaea
      0.051   12.5   0.0       0.17   10.8   0.0    1.8  2  AFG1_ATPase      AFG1-like ATPase
      0.078   12.8   0.0        0.2   11.4   0.0    1.7  2  AAA_11           AAA domain
      0.099   12.5   0.0       0.19   11.6   0.0    1.4  1  Bac_DnaA         Bacterial dnaA  protein
       0.17   11.6   0.1        1.7    8.3   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
       0.21   11.2   1.8       0.32   10.5   0.1    2.0  2  AAA_25           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.0   4.3e-47   2.5e-44       1     131 [.     285     417 ..     285     418 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.9 bits;  conditional E-value: 4.3e-47
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vllyGppGtGKT+l+kava+++ ++f+++ gse+++ky+ge+++ +r++f+ a+e++ p i+fiDEida+a++r   ++++++e +r++ +Ll+++dg+
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVANSTTASFIRVVGSEFVQKYLGEGPRMVRDVFRMARENS-PAIIFIDEIDAIATKRfdaQTGADREVQRILLELLNQMDGF 382
                 79******************************************************9.****************99888899999************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 ++  s+v vi+atnr d+ldpallr gR+drkie++
  CCE27440.1 383 DQM-SNVKVIMATNRADTLDPALLRpGRLDRKIEFP 417
                 **6.77***************************997 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.4e-11   1.4e-08       1      57 []     172     227 ..     172     227 .. 0.97
   2 ?   -1.1   0.0       3.4     2e+03      28      41 ..     396     409 ..     391     410 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 2.4e-11
                     EEEEEEE-TTSSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE- CS
  Prot_ATP_ID_OB   1 VatVsEvlddteraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkLP 57 
                     +++  E +d  +  iV++s++ ++vv++ + ++re L+p+ +Va++++++  +++LP
      CCE27440.1 172 IGQFMEAIDQ-NTGIVQSSTGSNYVVRILSTLDRELLKPSSSVALHRHSNSLVDILP 227
                     6889999999.********************************************99 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.4
                     E-GGGSSST--TTE CS
  Prot_ATP_ID_OB  28 lagavpremLrpgD 41 
                     +a+ ++++ Lrpg 
      CCE27440.1 396 RADTLDPALLRPGR 409
                     7899********96 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         5   2.9e+03      22      37 ..     129     144 ..     125     184 .. 0.66
   2 !   33.8   0.1   5.1e-11   2.9e-08       1     136 [.     284     406 ..     284     407 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 5
                 GBS--EEEEE--TT-- CS
       AAA_5  22 alnreveyvqltrdtt 37 
                 +l+r++ey+ql++ + 
  CCE27440.1 129 LLQRQLEYIQLQEEYI 144
                 4556666666555443 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 5.1e-11
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrllle 97 
                 +vlL GppGtgK++l++ +a  +++++  v ++++ ++    g+r +           + r ar  +++i+++DE++ + ++ +++      e ++ l 
  CCE27440.1 284 GVLLYGPPGTGKTMLVKAVANSTTASFIRVVGSEFVQKYLGEGPRMV---------RDVFRMARenSPAIIFIDEIDAIATKRFDAQTGADREVQRILL 373
                 59*******************************98888877888887.........66666777679********************998777777777 PP

                 -SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  98 eggelvkaknddllerfrviatanpldrslnelspalrs 136
                 e+ ++++     +++++ vi+++n++d     l+pal++
  CCE27440.1 374 ELLNQMDGFD--QMSNVKVIMATNRAD----TLDPALLR 406
                 7777775543..6888***********....88888875 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   5.3e-10   3.1e-07       6     105 ..     285     378 ..     280     397 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 5.3e-10
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG-------------HHHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqi 102
                 +ll gp g+Gkt+l ka+a+   +    ++ir+  se+ +    + l +     ++    a e+   i+++DEid i+ k+   +     +Vqr+LL +
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVANSTTA----SFIRVVGSEFVQ----KYLGEGPRMVRDVFRMARENSpaIIFIDEIDAIATKRFDAQTGADREVQRILLEL 375
                 6899****************9985....************....88888777778877777777778************966666666689*******9 PP

                 HH- CS
       AAA_2 103 leg 105
                 l +
  CCE27440.1 376 LNQ 378
                 975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       4.4   2.6e+03      41     101 ..     172     222 ..     170     246 .. 0.60
   2 !   23.7   0.0   9.2e-08   5.3e-05      15      56 ..     273     311 ..     269     326 .. 0.78
   3 ?    4.1   0.1     0.091        53     128     158 ..     335     376 ..     325     391 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 4.4
      AAA_16  41 vrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekl 101
                 + ++++a+ ++ gi+ + +   +        ++++l   +l r+ll +++s +l +++  l
  CCE27440.1 172 IGQFMEAIDQNTGIVQSSTGSNY--------VVRIL-S-TLDRELLKPSSSVALHRHSNSL 222
                 56788888888777766666666........44444.2.4444444444444555555444 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 9.2e-08
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellralekdggifl 56 
                 +++++  + p+ vll+G++G+GK+ lv++++++ +++   f+
  CCE27440.1 273 LYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTAS---FI 311
                 66677777789********************988877...33 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.091
      AAA_16 128 allsrderplvlvlDdlq...........wadeaslql.laaL 158
                 + +++  +p ++++D+++            ad + + + l++L
  CCE27440.1 335 RMARE-NSPAIIFIDEIDaiatkrfdaqtGADREVQRIlLELL 376
                 44555.889*********8888866666655556666634433 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     2e-08   1.2e-05      24     116 ..     244     350 ..     229     378 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2e-08
      DUF815  24 evklddLvgidkqkealvente....qf.....leglpannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkelpklvellr...erper 108
                  v+ +d+ g+d qk+++ e +e    qf     +   p + vLL+G  GtGK  lvka+ n+++++ +r++  e  ++ l e p++v+ +    +++  
  CCE27440.1 244 DVSYADVGGLDMQKQEIREAVElpltQFdlykqIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVVgsEFVQKYLGEGPRMVRDVFrmaRENSP 342
                 56677777777777777776652222222111122357789******************************77788999******99987523266678 PP

      DUF815 109 filfvDDL 116
                  i+f+D +
  CCE27440.1 343 AIIFIDEI 350
                 9***9975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.7e-05      0.01       8      29 ..     285     306 ..     280     323 .. 0.85
   2 ?    4.8   0.2     0.056        33      81     127 ..     329     392 ..     306     398 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.7e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++++G++GtGKT+l++ ++++ 
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVANST 306
                 689***************9987 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.056
      AAA_22  81 aleqalrarav..ielliiDEaqhlr..s........eealeeLrsllnl.....srkgvqliL 127
                 ++++ +r ++   ++++ iDE++ +   +         e+ + L +lln      + ++v++i+
  CCE27440.1 329 MVRDVFRMAREnsPAIIFIDEIDAIAtkRfdaqtgadREVQRILLELLNQmdgfdQMSNVKVIM 392
                 444444444445569*********9876144556776444444445555444467777777776 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   7.1e-07   0.00041       2      45 .]     442     485 ..     441     485 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7.1e-07
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfee 45 
                 vdl+ L  r +  SGA +aa+ +eA+l+A+r ++ +i ++d+e+
  CCE27440.1 442 VDLDSLIVRNDPLSGAIIAAIMQEAGLRAVRKNRYQIIQSDLED 485
                 6777777777778***********************99999986 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.4e-06    0.0014      35      97 ..     284     354 ..     259     363 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.4e-06
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvk.lkitsgPvlek.....agdlaalltnl..eekdvlfideihrls 97 
                  vllyGpPG Gkt l k +a+   ++ +++  +  ++k     ++ +  ++     ++  ++fidei  ++
  CCE27440.1 284 GVLLYGPPGTGKTMLVKAVANSTTASfIRVVGSEFVQKylgegPRMVRDVFRMAreNSPAIIFIDEIDAIA 354
                 59*******************99887256666666666322212222333322211334689999987765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.6e-06    0.0026       2      44 ..     285     332 ..     284     369 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.6e-06
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv.pEaareileeklakged 44 
                 + + G+++tGKT l++a a+      ++vv  E++ ++l e+ +  +d
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVANSttasFIRVVgSEFVQKYLGEGPRMVRD 332
                 6799***************65456578888888888888776644444 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.1e-06    0.0029       5      89 ..     231     319 ..     229     337 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.1e-06
                 XXXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXX...XXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   5 hshikgLGldedgeaekeee.glvGqk.kareaagviv...elikekkla.GravLlaGpsgtGktalaiaiskelgedvpfvalsgsevy 89 
                  s i+ LG de+ ++++++  gl  qk + rea+ + +   +l k+  +   r+vLl Gp+gtGkt l  a++++ +    f+ ++gse+ 
  CCE27440.1 231 DSSIAMLGADEKPDVSYADVgGLDMQKqEIREAVELPLtqfDLYKQIGIDpPRGVLLYGPPGTGKTMLVKAVANSTT--ASFIRVVGSEFV 319
                 5788999999998877766526655541679999875411156666555335*********************9866..789999999975 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   7.2e-06    0.0042       1      81 [.     285     394 ..     285     409 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7.2e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf....................gvnlrdvakenglllevdpe.......aldeskrldedkldklldaleenss.a 70 
                 +ll G+pG+GKt l k++++++ ++                    ++ +  +a+en + + + +e        +d +  +d++++  ll++l++ +  +
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVANSTtASfirvvgsefvqkylgegprmVRDVFRMARENSPAIIFIDEidaiatkRFDAQTGADREVQRILLELLNQMDGfD 383
                 799***************999865589999999999999999999999999999999999999999999888888888899999999999999988775 PP

      AAA_18  71 leegknlvidg 81 
                 ++++  +++  
  CCE27440.1 384 QMSNVKVIMAT 394
                 55555556655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.7e-05    0.0098      34     120 ..     283     361 ..     274     365 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-05
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpggkklvvFvDDlnmpakekygaq 120
                 + vll+Gp GtGKt+++k + ++           +f     ++ +q+ + +     r    ++  +   ++F+D+++  a  +++aq
  CCE27440.1 283 RGVLLYGPPGTGKTMLVKAVANSTT--------ASFIRVVGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQ 361
                 579***************9998777........556666677777777777777666666677777778888888877777777777 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.9e-06     0.004       1      71 [.     285     347 ..     285     366 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.9e-06
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdeenps.dla 71 
                   ++lyGp+g+GK++l+k +          +++   ++r + ++f+++Y g+   ++ D+ ++  e++p  ++ 
    CCE27440.1 285 VLLYGPPGTGKTMLVKAV---------ANSTTASFIRVVGSEFVQKYLGEGPRMVRDVFRMARENSPAiIFI 347
                   689**************3.........344455667999*********999999999999987755554444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   9.3e-06    0.0054       6      51 ..     270     315 ..     265     360 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.3e-06
      AAA_30   6 QaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrvig 51 
                 Q ++ +++  ++ r ++l Gp+GtGKt+++ka+++  +a+  rv+g
  CCE27440.1 270 QFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVVG 315
                 67777777778888899******************99999888876 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       6.3   3.6e+03      35      86 ..     136     175 ..     123     197 .. 0.46
   2 !   15.4   0.0   2.4e-05     0.014       5      77 ..     285     366 ..     282     397 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 6.3
      AAA_14  35 yinldderdkkladpekllelileklkeekktylflDEiqevpewekalksl 86 
                 yi+l++e  k+++ +  l          +++ +    Ei++++++  ++ ++
  CCE27440.1 136 YIQLQEEYIKDEQRS--L----------KRELVRAQEEIKRIQSVPLVIGQF 175
                 444443333322211..1..........222222333445554444444444 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.4e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkklad.pekllelileklkeekktylflDEiqev............p 77 
                 +++ G+  +GKT+l+k ++++      s++ +   +  +k l + p ++ + ++++++e+   ++f+DEi  +            +
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVANSTT---ASFIRVVGSEFVQKYLGEgP-RMVRDVFRMARENSPAIIFIDEIDAIatkrfdaqtgadR 366
                 7899***************8888...77777766665444444314.3445555544556899*******9986655555555554 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       5.8   3.3e+03      91     119 ..     238     265 ..     195     270 .. 0.70
   2 !   14.9   0.0   3.3e-05     0.019       2      90 ..     285     377 ..     284     391 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.8
                 HHHHHH-EEEE---STTGGG-HHHHHHHH CS
    NTPase_1  91 kalseadviviDEiGkmElkskkfkeave 119
                  a++++dv   D +G + ++ ++++eave
  CCE27440.1 238 GADEKPDVSYAD-VGGLDMQKQEIREAVE 265
                 456777777777.8888888888888887 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3.3e-05
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEEE.EEEEE-------EEEEEET.T--EEEEEETT---SSEETTEEE-HHH...HHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgGf.yteevreggrrigFkivdlasgeegiLarveakreprvgkyvvdves...feelalealr 90 
                 v++ GppG+GKt lvk v++    s ++v G   ++++  +g r+  ++  +a ++   +   ++   +  +++  ++ +   ++++ le l+
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVANSTTASFIRVVGSeFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGAdreVQRILLELLN 377
                 6788*************************9974688999**********99998888777777755555555554444322225555555555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00024      0.14       3      22 ..     285     304 ..     283     310 .. 0.88
   2 ?    0.2   0.0         1   6.1e+02      81     115 ..     341     378 ..     316     433 .. 0.67
   3 ?   -1.9   0.0       4.9   2.8e+03     126     155 ..     470     499 ..     458     502 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00024
                 EEEEC-TTTCHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklal 22 
                 v+l G++G GKT+L++ +a 
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVAN 304
                 899*************9986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1
                 CCEEEEEE-STT-SS-TCH............HHHHHCT CS
       NACHT  81 erlLlilDglDelvtdlgq...kekqpvrtlLselirk 115
                   + + +D +D ++t+         ++v++ L el+++
  CCE27440.1 341 SPAIIFIDEIDAIATKRFDaqtGADREVQRILLELLNQ 378
                 33445568888887744335554566677777777765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.9
                 EEECCCHHHHCTTSSCE..EEEE--TCCHH CS
       NACHT 126 tvrpralrdleeqleeaivlevegfsesrr 155
                 +vr ++ + +++ le+a++ +v+g s ++ 
  CCE27440.1 470 AVRKNRYQIIQSDLEDAYSSQVKGTSDDNK 499
                 688999999********9999999888775 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.9e-05     0.017      20      79 ..     283     341 ..     256     359 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.9e-05
                 EEEEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEEEE..SSEEEEE-TT-SSTHH CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeYelekeglyHfDlYRledeee 79 
                 + +lL+G+ G+GKT+lv+++a++   +  +v       v++Y  e    +  D++R+++e++
  CCE27440.1 283 RGVLLYGPPGTGKTMLVKAVANSTTASfiRV--VGSEFVQKYLGEGP-RMVRDVFRMARENS 341
                 349********************98885544..44456888855433.44468888865554 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   4.3e-05     0.025       2      30 ..     285     313 ..     284     321 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.3e-05
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vll g PG++kt+lvka+a++  ++f r+
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVANSTTASFIRV 313
                 7999**********************998 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.2e-05     0.024      25      43 ..     285     303 ..     277     312 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.2e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +ll+GppG+GKtml k+++
    CCE27440.1 285 VLLYGPPGTGKTMLVKAVA 303
                   89************99875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   4.6e-05     0.027       2      32 ..     285     317 ..     285     379 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.6e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdt 32 
                 vll G+pG+GK+ l++ +++ ++  ++++   +
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVANSTTasFIRVVGSE 317
                 7899***************99996666665555 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0012      0.69      33      59 ..     280     306 ..     267     313 .. 0.81
   2 ?    2.7   0.0      0.12        72     107     140 ..     329     362 ..     320     380 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0012
        TniB  33 krmpnlllvGdsnnGKtmivekFarlh 59 
                 + ++ +ll+G++ +GKtm+v+  a++ 
  CCE27440.1 280 DPPRGVLLYGPPGTGKTMLVKAVANST 306
                 556899**************9887665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.12
        TniB 107 leqqvlrllrelkvrvLiiDEihnllagsarkqr 140
                 + ++v r+ re ++ ++ iDEi+ + + + ++q 
  CCE27440.1 329 MVRDVFRMARENSPAIIFIDEIDAIATKRFDAQT 362
                 556788999999************9988877774 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.6e-05     0.055      47      78 ..     282     313 ..     259     350 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.6e-05
   IstB_IS21  47 kenivllGpsGvGKshlaialgveavraglsv 78 
                   +++l Gp+G+GK+ l  a++ ++ ++ ++v
  CCE27440.1 282 PRGVLLYGPPGTGKTMLVKAVANSTTASFIRV 313
                 56899***************999877665555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   0.00012     0.067       5      22 ..     285     302 ..     282     362 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l+yGp+g+GKT+l+k  
  CCE27440.1 285 VLLYGPPGTGKTMLVKAV 302
                 79************9987 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       4.6   2.7e+03      55     105 ..     137     198 ..     118     215 .. 0.50
   2 ?   10.6   0.0   0.00067      0.39      23      45 ..     285     307 ..     273     325 .. 0.82
   3 ?   -0.2   0.0       1.4   7.9e+02     116     148 ..     339     378 ..     327     398 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4.6
    ATPase_2  55 ialreesiskldefie.....eeeekkklekal.............giavpkaeleeilkeksklvfka 105
                 i+l+ee+i+  +++++      +ee       +             ++a+ ++++   +++ s++v + 
  CCE27440.1 137 IQLQEEYIKDEQRSLKrelvrAQEE-------IkriqsvplvigqfMEAIDQNTGIVQSSTGSNYVVRI 198
                 4444444444444433322221111.......0122233344555555555555544333445555544 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00067
    ATPase_2  23 yfiYGpegsGKtaLlkeiienle 45 
                 +++YGp g GKt L+k +++   
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVANSTT 307
                 789**************999874 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.4
    ATPase_2 116 kgkkiiiiiDelqklidlgln.......gaellvkeLlnl 148
                 +    ii+iDe+  +    ++       + +  + eLln 
  CCE27440.1 339 ENSPAIIFIDEIDAIATKRFDaqtgadrEVQRILLELLNQ 378
                 2233677777777776544445555444444444444444 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.6   9.2e+02     196     240 ..     116     161 ..     108     168 .. 0.67
   2 ?   10.8   0.0   0.00029      0.17      57      82 ..     277     302 ..     242     349 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.6
  AFG1_ATPase 196 levdggvDYRlrklrqaev.ylapldeaaeaaldklfkeltsgepe 240
                  +  +gg DY + kl q ++ y   ++e+ +++  +l +el+++++e
   CCE27440.1 116 VPTEGGDDYATMKLLQRQLeYIQLQEEYIKDEQRSLKRELVRAQEE 161
                  5668899999999888777244445555666666666677776654 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00029
  AFG1_ATPase  57 ksvepvrglYlwGgvGrGKtylmdlf 82 
                      p+rg+ l+G+ G GKt+l+   
   CCE27440.1 277 IGIDPPRGVLLYGPPGTGKTMLVKAV 302
                  4568******************9865 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.2   3.6e+03     167     188 ..     141     162 ..     112     186 .. 0.64
   2 ?   11.4   0.0   0.00034       0.2      20      42 ..     285     307 ..     256     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.2
      AAA_11 167 rrklkkerkelskeleeaeesl 188
                 ++ +k+e+++l++el +a+e++
  CCE27440.1 141 EEYIKDEQRSLKRELVRAQEEI 162
                 3333333344444444433333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00034
      AAA_11  20 tliqGPPGtgKTktivellsqll 42 
                 +l+ GPPGtgKT  + ++ ++ +
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVANSTT 307
                 699*********99888887764 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00032      0.19      37     112 ..     285     356 ..     279     398 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00032
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHT.T-SEEEEE-GGGGTT- CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklr.kvDvLliDDiqflagk 112
                 +++yg+ G Gkt L+ka++n +++++   rv    + eF+++ +        + f+     +  ++ iD+i  +a+k
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVANSTTASF--IRV---VGSEFVQKYLGEGPRMVRDVFRMAREnSPAIIFIDEIDAIATK 356
                 79******************987765..333...3556666666555555555555444313345556666666665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0     0.003       1.7      23      47 ..     283     307 ..     267     323 .. 0.81
   2 ?   -0.0   0.1       1.1   6.2e+02      96     143 ..     344     396 ..     336     402 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.003
                      S-EEEECSTTSSHHHHHHHHHHHST CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheask 47 
                        vl+ G  GtGK++l +a+ ++++
       CCE27440.1 283 RGVLLYGPPGTGKTMLVKAVANSTT 307
                      579***************9977554 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.1
                      EEEEETGGGS-HH...HHHHHHHHHHHSEEESBTSSS..EEE--EEEEEEESS CS
  Sigma54_activat  96 tlfLDeigelple...lQekLlrvlqegevervGssk..eikvdvriiaatne 143
                      ++f+Dei  + ++   +Q+   r +q+  +e + + +   +  +v++i+atn+
       CCE27440.1 344 IIFIDEIDAIATKrfdAQTGADREVQRILLELLNQMDgfDQMSNVKVIMATNR 396
                      66777776665431114444444444444444443332245567888888876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00055      0.32      36      57 ..     285     306 ..     281     321 .. 0.86
   2 ?   -2.1   0.0       4.1   2.4e+03     130     162 ..     330     361 ..     312     380 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00055
      AAA_25  36 allaGapgtGKttlaldlalav 57 
                 +ll+G+pgtGKt+l+  +a ++
  CCE27440.1 285 VLLYGPPGTGKTMLVKAVANST 306
                 69************98777655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.1
      AAA_25 130 vdaleaaieevegvrlvviDplsralggdensn 162
                 v+++ + ++e + ++ + iD ++++     +++
  CCE27440.1 330 VRDVFRMARE-NSPAIIFIDEIDAIATKRFDAQ 361
                 5566777777.7799999999888666533333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 3564.05
//
Query:       CCE27441.1  [L=135]
Description: uncharacterized protein CPUR_00915 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1044.32
//
Query:       CCE27442.1  [L=200]
Description: uncharacterized protein CPUR_00916 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-11   44.2   6.1    3.9e-11   43.4   4.8    2.1  2  Mis14          Kinetochore protein Mis14 like
  ------ inclusion threshold ------
      0.036   14.3   0.3       0.12   12.6   0.1    1.9  2  SWIRM-assoc_3  SWIRM-associated domain at the C-terminal


Domain annotation for each model (and alignments):
>> Mis14  Kinetochore protein Mis14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.18   1.6e+03      77      94 ..      32      49 ..      11      66 .. 0.51
   2 !   43.4   4.8   4.4e-15   3.9e-11      27     100 ..      70     145 ..      44     178 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.18
                CHHHHHHCT--HHHHH-- CS
       Mis14 77 aeleeldeyleainelek 94
                a+++ l+e+l++i+ + +
  CCE27442.1 32 AATAHLEEALPRIEGQRE 49
                444444444444333332 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 4.4e-15
                 HHTT.XXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCT--HHHHH--....---- CS
       Mis14  27 qkeevEpfdlelnekvrslyqelEdltvevAqlRreaPrkiaeayakelkaeleeldeyleainelek..qekkdp 100
                 +++  Epfd + +++v++l+ + E+l+ evA+l+r++P+++a++ a  ++a++ +++e+ ++ +e+    +e++ +
  CCE27442.1  70 TPQAYEPFDGRTRQRVADLITQEEKLLEEVAALKRSVPAQAAAEHAARIEAAIRRDEELVQRRREEVGrrAEEQSE 145
                 46677*****************************************************877777777754333333 PP

>> SWIRM-assoc_3  SWIRM-associated domain at the C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.3e-05      0.12      14      44 ..      96     126 ..      94     132 .. 0.91
   2 ?   -2.3   0.0       0.6   5.3e+03      13      36 ..     168     191 ..     166     198 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
  SWIRM-assoc_3  14 leeFskikdevPaalveaHvknveaaaektg 44 
                    lee +++k  vPa+ + +H  ++eaa +++ 
     CCE27442.1  96 LEEVAALKRSVPAQAAAEHAARIEAAIRRDE 126
                    89***********************998765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.6
  SWIRM-assoc_3  13 AleeFskikdevPaalveaHvknv 36 
                    A+e    +k + Pa ++     +v
     CCE27442.1 168 AVEGLGMLKRDMPAVVARMERARV 191
                    666667788888988876555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1371.84
//
Query:       CCE27443.1  [L=326]
Description: probable phosphatidylinositol/phosphatidylcholine transfer protein SEC14 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.7e-38  129.4   0.0    1.5e-37  128.8   0.0    1.3  1  CRAL_TRIO    CRAL/TRIO domain
    3.6e-09   36.7   0.4    1.2e-08   35.0   0.4    1.9  1  CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
     0.0039   17.3   0.0     0.0082   16.3   0.0    1.5  1  CRAL_TRIO_2  Divergent CRAL/TRIO domain
  ------ inclusion threshold ------
       0.15   12.3   0.0        0.3   11.3   0.0    1.4  1  DUF1769      Protein of unknown function (DUF1769)


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8   0.0   3.3e-41   1.5e-37       2     159 .]     100     265 ..      99     265 .. 0.93

  Alignments for each domain:
  == domain 1  score: 128.8 bits;  conditional E-value: 3.3e-41
   CRAL_TRIO   2 eileggkvgihgrDkegrpvlylrlgrfdpk...kls.leelvralvlvlerllkelee......dgqvegvtvviDlkglslskmlwkp.isllkkil 89 
                 ei++++k+++h++Dk+grp+++  lg +d +   k++  e+++  l + +er+++   +      ++  e+++ v+Dlkg++l k++  + +s++++ +
  CCE27443.1 100 EIAKYYKQFYHKTDKDGRPIYIETLGGIDLTamyKITtAERMLTNLAVEYERVADPRLPacsrkaGALLETCCTVMDLKGVTLTKVP--SvYSYVRQAS 196
                 7899****************************99888899************999444456667789********************..55******** PP

   CRAL_TRIO  90 kilqdnyperlgkilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGGt 159
                  i q++yperlgk++++naP+ f++++++vk++ld++t +Ki+++++  + ++l k++d+e+lp+e+GGt
  CCE27443.1 197 VISQNYYPERLGKLFLINAPWGFSTVWSVVKGWLDPVTVKKIHILGSGYK-SELLKHVDAESLPVEFGGT 265
                 *********************************************77665.9*****************7 PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.4   2.7e-12   1.2e-08       4      53 ..      37      75 ..      34      76 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 2.7e-12
  CRAL_TRIO_N  4 ellahlqeseyklteeekfWltredhdda.clLRfLRArkwdvekAikrLe 53
                 +l++ l+ ++yk            ++ d  +lLRfLRArkwdv+ A+++++
   CCE27443.1 37 QLRSSLEAEGYK------------ERLDTlTLLRFLRARKWDVALAKTMFV 75
                 788888888888............555555*******************97 PP

>> CRAL_TRIO_2  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.8e-06    0.0082      39     132 ..     171     265 ..     160     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.8e-06
  CRAL_TRIO_2  39 yvlVyfhtglssenkp.slswlkkvystlprrykknlkklyivhpstfvktllktvlsafvsskfrkkveyv..srleeLarkidrtqllkslPegv 132
                  ++ V++ +g++  + p ++s+++++  + ++ y+++l kl+++++ + + t+  +v++ ++ +   kk++ +   + +eL +++d + l+ +++ g+
   CCE27443.1 171 CCTVMDLKGVTLTKVPsVYSYVRQASVISQNYYPERLGKLFLINAPWGFSTVW-SVVKGWLDPVTVKKIHILgsGYKSELLKHVDAESLPVEFG-GT 265
                  6677777777765544169**********************************.888999999999999996225689***********99998.66 PP

>> DUF1769  Protein of unknown function (DUF1769)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.8e-05       0.3      18      35 ..     215     233 ..     210     238 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.8e-05
     DUF1769  18 lPpgfsaalkfak.fiDpg 35 
                  P+gfs+++ ++k ++Dp 
  CCE27443.1 215 APWGFSTVWSVVKgWLDPV 233
                 6****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2367.50
//
Query:       CCE27444.1  [L=432]
Description: uncharacterized protein CPUR_00918 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-46  156.1   0.0    1.3e-45  155.7   0.0    1.2  1  DUF155    Uncharacterised ACR, YagE family COG1723
  ------ inclusion threshold ------
       0.03   13.6   2.1      0.034   13.4   2.1    1.2  1  ORC6      Origin recognition complex subunit 6 (ORC6)
      0.033   13.8   0.0      0.057   13.0   0.0    1.4  1  Cupin_1   Cupin


Domain annotation for each model (and alignments):
>> DUF155  Uncharacterised ACR, YagE family COG1723
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.7   0.0   2.1e-49   1.3e-45       1     176 []     183     366 ..     183     366 .. 0.91

  Alignments for each domain:
  == domain 1  score: 155.7 bits;  conditional E-value: 2.1e-49
      DUF155   1 vfiFknGsvVfwgldeeeeknflnkllkflneeselpreeeqeteeleyvydeqsessrikgdvivlksk..........slleklaiShalaqSvkLd 89 
                 +f+F++G+vV+w l+    + + +++l+++++     + e +e e+l++ +d+++ +s +kgd++vl+ +          ++l+k+a+S++la+S+ L+
  CCE27444.1 183 IFVFPSGTVVTWSLPS---DVVTKQILRAAEDA---HPPELREVEDLDFETDTSRAESAMKGDKVVLGMRkehrdgdtrdTTLAKIAFSSGLARSTNLA 275
                 7************664...44555666666655...444555589**********************87779*************************** PP

      DUF155  90 vlEesldellestekipkelakkgklklsrkellkktgellslrinlnlkselldt.PdffW...eepeleslyeavseyleikeRikiLn 176
                 vlE+++ +++est++ip+ l++++ l+l rk++l+ktgellslr++ln++sel+d+ Pd+fW   +e  le++y++v ++l+++ Ri++Ln
  CCE27444.1 276 VLETAFMHYFESTRHIPAILSQGSGLPLGRKFILQKTGELLSLRARLNHYSELTDSlPDIFWdskSELGLEGYYDQVGRALDVNVRIRTLN 366
                 ***********************999************************************7777799*********************9 PP

>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.1   5.8e-06     0.034      89     141 ..      55     125 ..      35     254 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.8e-06
        ORC6  89 s......satstPs..kspsspstdpkslrkqlfsTPtKsktlktalsa..........sksssplkrrrk 141
                        +a+++Ps  +spss+s ++ + +k++ sTP  +k+ +   +            +++sp k   +
  CCE27444.1  55 NpaenasEASPSPSspSSPSSSSSTTDTRPKGQASTPKRKKPRSATAKTslrrvaiiaqDPKRSPDKSNAA 125
                 2577777777777522355555559999999999***9888766665555677777777666777663322 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.5e-06     0.057      75      99 ..     158     194 ..     128     201 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.5e-06
                 S............EEEEEE.EETTEEEEE-TT-EEEE CS
     Cupin_1  75 g...........nrdfhkk.lreGdvfvvPaglvhfq 99 
                             n++ h+k ++ Gd+fv+P+g v+ +
  CCE27444.1 158 FaidpddtgfdaNEVVHAKgVNGGDIFVFPSGTVVTW 194
                 35555557777789******************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3246.94
//
Query:       CCE27445.1  [L=929]
Description: uncharacterized protein CPUR_00919 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (929 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1101  (0.0614089); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 6081.87
//
Query:       CCE27446.1  [L=395]
Description: probable aspartic proteinase,pepstatin-sensitive [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     4e-110  368.1   0.1   4.9e-110  367.9   0.1    1.1  1  Asp              Eukaryotic aspartyl protease
    1.5e-16   61.2   2.6    2.2e-14   54.1   2.6    2.5  1  TAXi_N           Xylanase inhibitor N-terminal
    1.6e-05   25.5   0.1       0.47   11.1   0.0    3.1  3  Asp_protease_2   Aspartyl protease
    0.00041   20.1   0.0      0.013   15.3   0.0    2.6  2  TAXi_C           Xylanase inhibitor C-terminal
    0.00094   19.7   0.0        1.9    9.1   0.0    2.9  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.9   0.1  1.4e-113  4.9e-110       1     314 [.      84     393 ..      84     394 .. 0.99

  Alignments for each domain:
  == domain 1  score: 367.9 bits;  conditional E-value: 1.4e-113
                 EEEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   1 eYfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdgsvsGflsqdtvkvggltvknqefgeatkepgs 99 
                 +Yf+ei+iGtp+q+f+v++DTGSs+lWVps++c+ s+ac+ h++yd+s+Ssty+kng++++i+YG+gs+sGf+s+d +++g+l++k+q+f+eat epg 
  CCE27446.1  84 QYFSEITIGTPPQTFKVVLDTGSSNLWVPSQSCS-SIACYLHNKYDSSSSSTYEKNGTQFEIRYGSGSLSGFVSNDVMSIGDLKIKKQDFAEATAEPGL 181
                 7********************************9.9*************************************************************** PP

                 HHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESSTSSTEEEEEEEEETTEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 100 tflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvtskgywqielesvtvggktvlcssg 198
                  f+  kfdGiLGlg+++isv++++p+f+n+v+q+l++epvf++yl  ++eeg++ +fGg+D+s+y+G+l y+p+ +k+yw+++++s+ +g++ +   ++
  CCE27446.1 182 AFAFGKFDGILGLGYDSISVNNIVPPFYNMVKQKLLDEPVFAFYLG-SSEEGSMATFGGLDKSHYTGKLEYIPLRRKAYWEVDINSIAFGDEVA-DLEN 278
                 *********************************************9.8899****************************************999.9999 PP

                 EEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESE....EECCTSSSEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx RF
         Asp 199 cqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilgl....vseeegdlwiLGd 293
                 + ailDtGTsl +lp+s ++ ++k+igakk  + g+y+++Cd+ +slpdi f++ g ++++p+s+++l+ +    ++Ci+ +    ++e+ g+l iLGd
  CCE27446.1 279 TGAILDTGTSLNVLPSSLADMLNKEIGAKKGWN-GQYTIECDKKKSLPDIVFNLAGSNYSLPASDYILELQ----GSCISTFqgmdIPEPAGPLIILGD 372
                 *********************************.**********************************999....68******9999************ PP

                 HHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxx RF
         Asp 294 vFlrsayvvfdldnnrvglAe 314
                  Flr++y+v+dl++n vglA 
  CCE27446.1 373 AFLRRYYSVYDLGKNAVGLAL 393
                 *******************95 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   2.6   6.2e-18   2.2e-14       1     178 []      85     239 ..      85     239 .. 0.78

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 6.2e-18
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCk.aceasssaksgsssstceyeisygadgssssGvlat 98 
                 Y+ +i iGtppq++k+v+DtGs+ +Wv                           +css +C  + +  ss++s+ +++  ++ei+yg  g s sG++++
  CCE27446.1  85 YFSEITIGTPPQTFKVVLDTGSSNLWVPS------------------------QSCSSIACYlHNKYDSSSSSTYEKNGTQFEIRYG-SG-SLSGFVSN 157
                 99***************************........................4677777775336678888888999999*****7.55.9******* PP

      TAXi_N  99 dtltlsstdgksvkvpnlvfGCgksnlgglaagadGilGLGrgklSlvsqlaskg.......slgnkFsyCLssssssssgvlffGd 178
                 d++++ +    ++k ++++ + ++  l   + + dGilGLG+ ++S+ + +   +         + +F+ +L   ss++++ ++fG+
  CCE27446.1 158 DVMSIGDL---KIKKQDFAEATAEPGLAFAFGKFDGILGLGYDSISVNNIVPPFYnmvkqklLDEPVFAFYL--GSSEEGSMATFGG 239
                 *****444...5555566666666788888889***********9976544322222222226678899999..8888889999986 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.1   1.1e+04      62      70 ..      23      31 ..      11      64 .. 0.55
   2 !   11.1   0.0   0.00013      0.47       8      88 ..      96     194 ..      88     196 .. 0.63
   3 !   10.8   0.0   0.00017      0.62       9      38 ..     278     307 ..     261     316 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.1
  Asp_protease_2 62 klggltlkn 70
                    kl +++l++
      CCE27446.1 23 KLQKISLEE 31
                    333333322 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00013
  Asp_protease_2   8 kpvrfllDTGasttlispelaekl..glkvreseltvrvsgaggevkarlvrlds...........lklggltlknvpalvld.......lgeei 82 
                     ++++++lDTG+s++ ++++   ++   l+++ ++   ++s+  ++ +  ++r  s           +++g+l++k ++++ +           + 
      CCE27446.1  96 QTFKVVLDTGSSNLWVPSQSCSSIacYLHNKYDS--SSSSTYEKNGTQFEIRYGSgslsgfvsndvMSIGDLKIKKQDFAEATaepglafAFGKF 188
                     6899**************9999986644443332..44455544455555555544455555555688999999888888777432222211355 PP

  Asp_protease_2  83 dglLGm 88 
                     dg+LG+
      CCE27446.1 189 DGILGL 194
                     888886 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00017
  Asp_protease_2   9 pvrfllDTGasttlispelaeklglkvres 38 
                      + ++lDTG s ++++++la+ l+ +  ++
      CCE27446.1 278 NTGAILDTGTSLNVLPSSLADMLNKEIGAK 307
                     5679****************9998776655 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   4.1e+03      32      81 ..      99     149 ..      89     168 .. 0.68
   2 !   15.3   0.0   3.5e-06     0.013      87     158 ..     319     390 ..     260     392 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                 SEEE-SSSSSEEE-HHHHHHHHHHHHHTS-GG...G.E---TT-S-EEETT CS
      TAXi_C  32 gtvlstgtpytvletdvYralvkafakelaaekvkr.vaavkpfelCynss 81 
                 ++vl+tg++   ++++  + ++  + ++ ++++ +   ++ ++fe  y s 
  CCE27446.1  99 KVVLDTGSSNLWVPSQSCSSIACYLHNKYDSSSSSTyEKNGTQFEIRYGSG 149
                 677777777777777666666666666666666444466666777776665 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.5e-06
                 ..-S----EEEEESSS-EEEE-GGGGEEE-SSSEEEE-EEE-...-S--SSSEEE-HHHHBTS-EEEETTTTEEE CS
      TAXi_C  87 ragpavPtitlvleggaewtisgenllvkveggvvClafves...gvagesavviGglqlednllvFDleksrlg 158
                 + ++++P+i ++l+ g++  +++++++++ +g+  C+   ++   +++  + +++G + l+ ++ v+Dl k+ +g
  CCE27446.1 319 DKKKSLPDIVFNLA-GSNYSLPASDYILELQGS--CISTFQGmdiPEPAGPLIILGDAFLRRYYSVYDLGKNAVG 390
                 56789*********.8*************9999..999888889999************************9987 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00053       1.9       8      74 ..      96     173 ..      88     195 .. 0.64
   2 !    7.3   0.0    0.0019       6.7      11      40 ..     280     309 ..     272     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00053
                      EEEEEEEETT-SS-EEEHHHHH..HTTGGGGEB..TT--EE-TTST.T-EEEE........EEEEEE.EETTEEEEEE CS
  gag-asp_proteas   8 kpvkflvDTGAsstiiseelae..rlglsrkedkgkvevktangev.eakrvr........ldsvkiggielrnvsav 74 
                      +++k+++DTG s+  ++++     ++ l+ k d ++++    ng++ e++ +          d ++ig++++++ +++
       CCE27446.1  96 QTFKVVLDTGSSNLWVPSQSCSsiACYLHNKYDSSSSSTYEKNGTQfEIRYGSgslsgfvsNDVMSIGDLKIKKQDFA 173
                      57899************9999944556888888777777777776533322212222222244566666666666655 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0019
                      EEEEETT-SS-EEEHHHHHHTTGGGGEB.. CS
  gag-asp_proteas  11 kflvDTGAsstiiseelaerlglsrkedkg 40 
                       +++DTG s  +++++la+ l+ +   +kg
       CCE27446.1 280 GAILDTGTSLNVLPSSLADMLNKEIGAKKG 309
                      689****************99877776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2807.79
//
Query:       CCE27447.1  [L=282]
Description: uncharacterized protein CPUR_00921 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-13   49.0   7.3    1.2e-12   47.8   7.3    1.7  1  WSC              WSC domain
    4.4e-06   26.9   0.8    7.8e-06   26.1   0.8    1.3  1  Podoplanin       Podoplanin
    7.9e-06   25.2   4.4    1.6e-05   24.2   4.4    1.5  1  SKG6             Transmembrane alpha-helix domain
    0.00043   20.5   0.1    0.00085   19.5   0.1    1.5  1  Glycophorin_A    Glycophorin A
     0.0026   17.7   0.0     0.0049   16.8   0.0    1.4  1  Syndecan         Syndecan domain
     0.0045   17.0   0.1      0.012   15.6   0.1    1.7  1  DUF3042          Protein of unknown function (DUF3042)
  ------ inclusion threshold ------
      0.013   15.4   0.1      0.026   14.4   0.0    1.4  1  TMEM154          TMEM154 protein family
      0.016   15.6   0.4      0.016   15.6   0.4    1.8  2  MGC-24           Multi-glycosylated core protein 24 (MGC-24),
       0.06   12.1   0.0      0.084   11.7   0.0    1.1  1  BatD             Oxygen tolerance
       0.09   13.4   0.0       0.18   12.4   0.0    1.4  1  DUF2627          Protein of unknown function (DUF2627)
       0.14   10.9   0.0       0.17   10.6   0.0    1.1  1  DUF2207          Predicted membrane protein (DUF2207)
       0.15   11.4   0.0       0.23   10.8   0.0    1.2  1  DUF5305          Family of unknown function (DUF5305)
       0.99    9.4   3.5       0.36   10.8   0.4    2.0  2  Gram_pos_anchor  LPXTG cell wall anchor motif
        2.6    8.6  11.1       0.25   11.9   5.9    1.9  2  Alpha_GJ         Alphavirus glycoprotein J


Domain annotation for each model (and alignments):
>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   7.3   9.4e-16   1.2e-12       3      82 .]      39     114 ..      37     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 9.4e-16
         WSC   3 GCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82 
                 GCy +   +++    +  + ++m++ +C ++Ck++g+ +a++  g +C Cg  lp+++   ++s+Cn++C+ ++ ++CGg
  CCE27447.1  39 GCYGTY-GNMT--MHKPITADKMSTAACNNACKDDGFWLAAMHGG-QCLCGYALPPKKDLVEDSECNQPCPAYPPEACGG 114
                 888855.3333..444567889*********************88.*********************************8 PP

>> Podoplanin  Podoplanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.8   6.1e-09   7.8e-06      82     155 ..     144     214 ..     122     217 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 6.1e-09
                 G-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX CS
  Podoplanin  82 dlptaestvkakeesqstttlnvvtshstekvgeetettvekdGLatvtL.vgiivGvllaigfiggiiivvvrk 155
                 +++ta+ t ++k  + st +++++t +s  +     + + +k G +++ +  g++vG++ ai++i+gii+ + rk
  CCE27447.1 144 QTSTAAPTSADKSSAGSTGSASTATQSSAPT----ESSAPQKSGPNVAGIaAGVVVGIVAAIALIAGIIFYIRRK 214
                 5567777778888888888888888888322....33445788988887636*******************9998 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   4.4   1.2e-08   1.6e-05       4      38 .]     181     215 ..     179     216 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.2e-08
        SKG6   4 ssnsntvaIavaVaVPVaViiivLlailifvrRRk 38 
                 +s+ n + Ia++V+V++++ i+++++i + +rR++
  CCE27447.1 181 KSGPNVAGIAAGVVVGIVAAIALIAGIIFYIRRKR 215
                 7899************9998888888888888875 PP

>> Glycophorin_A  Glycophorin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   6.6e-07   0.00085       7      95 ..     136     221 ..     130     232 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 6.6e-07
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXSSSSSSS-TTHHHHHHHHHHHHHHHHHHHHHHHHTHSXXXXXXXXX CS
  Glycophorin_A   7 vssttgdkskasvtastpsahevseltirtevaaeqeetgereqlvhdFselvitliifgvmAgvigtillisYlirRliKKssvdvkp 95 
                     ssttg  +++  ta+  sa+++s  ++ +  +a q +    e+ + + s + +++i  gv+ g++  i li+ +i  +++K +++++ 
     CCE27447.1 136 SSSTTGGGQTS--TAAPTSADKSSAGSTGSASTATQSS-APTESSAPQKSGPNVAGIAAGVVVGIVAAIALIAGIIFYIRRKRNSEIEE 221
                    45565554444..4444566666666655555556666.45666677779**************************9999999988865 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.8e-06    0.0049       9      37 ..     186     214 ..     182     230 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.8e-06
    Syndecan   9 laaviggvvvgllfaillvlflvYRmrKK 37 
                 +a++ +gvvvg++ ai l++ +++ +r+K
  CCE27447.1 186 VAGIAAGVVVGIVAAIALIAGIIFYIRRK 214
                 599***********************999 PP

>> DUF3042  Protein of unknown function (DUF3042)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   9.2e-06     0.012       6      40 ..     191     225 ..     189     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.2e-06
     DUF3042   6 kGflvGvlatiaavagavfvfKkkviePiEekeak 40 
                  G++vG +a ia +ag  f +++k    iEe+  +
  CCE27447.1 191 AGVVVGIVAAIALIAGIIFYIRRKRNSEIEEEHRR 225
                 7**********************999999987655 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.1e-05     0.026       6      90 ..     137     218 ..     128     232 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.1e-05
     TMEM154   6 ksgdtaletatleeesadatsaasteseslkqeeakeslssaelsnesdqlelvlmiiiPlvllillllvviiliqkkkrkrsKd 90 
                  s++  ++t t+ ++sad +sa st s s +++ +  ++ssa  +   +   +   +++  v+ i l+  +i+ i   +rkr+ +
  CCE27447.1 137 SSTTGGGQTSTAAPTSADKSSAGSTGSASTATQSSAPTESSAPQKSGPNVAGIAAGVVVGIVAAIALIAGIIFYI---RRKRNSE 218
                 566667889999999999999999988888866666666666555555555555555555555555544444445...4444433 PP

>> MGC-24  Multi-glycosylated core protein 24 (MGC-24), sialomucin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       3.5   4.5e+03      87      87 ..      57      57 ..      14      84 .. 0.53
   2 ?   15.6   0.4   1.3e-05     0.016      54     128 ..     135     212 ..      98     220 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.5
      MGC-24 87 t 87
                +
  CCE27447.1 57 K 57
                1 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.3e-05
      MGC-24  54 aaskstpkptnstaktttkpsstttstsvatsgttnttvtptsqparkstFD....aAsFiGGivLvLgvqAviFFlyk 128
                 a+s++t   ++sta +t+++ s++ st +a+++t ++++t +s p +ks+ +    aA  + Giv  +++ A i F ++
  CCE27447.1 135 ASSSTTGGGQTSTAAPTSADKSSAGSTGSASTATQSSAPTESSAP-QKSGPNvagiAAGVVVGIVAAIALIAGIIFYIR 212
                 555555555567777777777776666666555555555555544.555544122267778888888888886666554 PP

>> BatD  Oxygen tolerance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.5e-05     0.084     385     463 ..     143     228 ..     122     234 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.5e-05
        BatD 385 aasspasstsaspaqkeevkllgkdirfik.geaslkkkgs..ff....lfwlllllplllfvvllllwrkrrrenadvaaskkkk 463
                  ++s+a++tsa+ +++ ++ ++ + ++    +e+s+ +k+   +     ++ + +++ ++l++ +++++r++r+++ + +++++ +
  CCE27447.1 143 GQTSTAAPTSADKSSAGSTGSASTATQSSApTESSAPQKSGpnVAgiaaGVVVGIVAAIALIAGIIFYIRRKRNSEIEEEHRRNAA 228
                 33333333333333333333333333322255555555555543367776667777777777778888888887777777777654 PP

>> DUF2627  Protein of unknown function (DUF2627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.18      43      69 ..     190     217 ..     174     224 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
     DUF2627  43 laGlll.faiglgfiaGfilhrdrKrnk 69 
                 +aG+++ +++++++iaG i++  rKrn+
  CCE27447.1 190 AAGVVVgIVAAIALIAGIIFYIRRKRNS 217
                 56665537889***************95 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00014      0.17     196     251 ..     176     225 ..     130     242 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00014
     DUF2207 196 ntreraarlslallillilllilllllllllliklllwkkygrepkvkevdpeYer 251
                 +  +++   ++a +++ ++++i+++++l+  +i+      y r++++ e+++e++r
  CCE27447.1 176 SSAPQKSGPNVAGIAAGVVVGIVAAIALIAGIIF------YIRRKRNSEIEEEHRR 225
                 4456677778888888899999999999999999......8899999999999987 PP

>> DUF5305  Family of unknown function (DUF5305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.23     108     149 ..     181     222 ..     154     232 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
     DUF5305 108 kespslae.gilliilgllaliglvvlirriiftsskaekyel 149
                 k  p++   +++++++g++a+i+l++ i ++i  +++ e +e 
  CCE27447.1 181 KSGPNV-AgIAAGVVVGIVAAIALIAGIIFYIRRKRNSEIEEE 222
                 222333.257777777777777777666666665555444443 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       5.5     7e+03      16      26 ..     156     166 ..     150     168 .. 0.52
   2 ?   10.8   0.4   0.00028      0.36      22      42 ..     197     217 ..     187     218 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.5
                      XXXXXXXXXXX CS
  Gram_pos_anchor  16 gnifltaaGll 26 
                      ++++ t  +++
       CCE27447.1 156 SSAGSTGSAST 166
                      55555555544 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00028
                      XXXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  22 aaGllallggllLlvkrRKke 42 
                      +++++al++g+ ++++r++++
       CCE27447.1 197 IVAAIALIAGIIFYIRRKRNS 217
                      7899**************986 PP

>> Alpha_GJ  Alphavirus glycoprotein J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2       2.3   2.9e+03      68      80 ..      56      68 ..       7      88 .. 0.49
   2 ?   11.9   5.9    0.0002      0.25      29     100 ..     138     205 ..     130     231 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.3
    Alpha_GJ 68 dstvaaetPgpfl 80
                d  ++a    +  
  CCE27447.1 56 DKMSTAACNNACK 68
                2222333333333 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.0002
    Alpha_GJ  29 ttatvgaanaaavanatganatsaaaastiaatvgapptdstvaaetPgpflptdfalPlviGGlcaltlaa 100
                 +t  +g  +++++a ++++++ + +++s+++at ++ pt+s +a++  gp + + +a  +v+G + a++l a
  CCE27447.1 138 ST--TGGGQTSTAAPTSADKSSAGSTGSASTATQSSAPTES-SAPQKSGPNV-AGIAAGVVVGIVAAIALIA 205
                 33..3333333444444444444445566666666666666.5888888875.5789999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1086  (0.0605723); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2117.03
//
Query:       CCE27448.1  [L=181]
Description: uncharacterized protein CPUR_00922 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1469.66
//
Query:       CCE27449.1  [L=765]
Description: uncharacterized protein CPUR_00923 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.12   12.0   0.1       0.21   11.2   0.1    1.3  1  CRPV_capsid  CRPV capsid protein like


Domain annotation for each model (and alignments):
>> CRPV_capsid  CRPV capsid protein like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.2e-05      0.21      73     114 ..      55      98 ..      50     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.2e-05
  CRPV_capsid  73 yrGgvryKiaaeknk..llknealesrsslvdvysttdspdktg 114
                  +rGg r+K +  k++  +++n++ + ++ ++d +   ++p k +
   CCE27449.1  55 WRGGRRFKTQKRKQNteTKQNGSSDDTVMVIDSDDEQQQPAKAQ 98 
                  9*********9999877899999999999999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 5775.89
//
Query:       CCE27450.1  [L=395]
Description: probable DNA repair endonuclease rad2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-32  109.8   0.0    1.8e-31  108.6   0.0    1.7  1  XPG_N       XPG N-terminal domain
    3.5e-30  104.2   1.2    8.1e-30  103.0   0.0    2.1  2  XPG_I       XPG I-region
    1.6e-06   28.6   0.5    1.2e-05   25.8   0.0    2.5  2  5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
  ------ inclusion threshold ------
      0.061   13.9   0.0       0.17   12.5   0.0    1.7  1  HHH_5       Helix-hairpin-helix domain
       0.14   12.3   0.0       0.42   10.8   0.0    1.8  1  HHH_2       Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.0   5.1e-35   1.8e-31       1     101 []       1     107 [.       1     107 [. 0.97

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 5.1e-35
                 X--TTHHHHHHHH-..GEEEEEGGGGTTEEEEEEHHHHHHHHHHHSE.ETTEE-BS.....-HHHHHHHHHHHHHHHTTEEEEEEE--S--GGGHHHHH CS
       XPG_N   1 MGikgLlkllkeva..airsvsiealegkklaiDaslwlyrfliavreqlgnalen.....tshlmglfsrllrlldfgikPifVFdgkapdlkkeele 92 
                 MGik L +++k+ a  ai++ +i++ +g+k+aiDas+++y fliavr  +g++l+n     tshlmg+f+r+lr++d+gikP++VFdg +p+lk++el+
  CCE27450.1   1 MGIKQLFQIIKDEApdAIKEGEIKNHFGRKVAIDASMSIYSFLIAVR-SDGQQLMNdsgetTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELA 98 
                 ***********************************************.6788888889999************************************** PP

                 HHHHHHHHH CS
       XPG_N  93 krserrqea 101
                 kr +r+qea
  CCE27450.1  99 KRFQRKQEA 107
                 ******986 PP

>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   2.3e-33   8.1e-30       1      94 []     146     233 ..     146     233 .. 0.97
   2 ?   -1.2   0.4      0.73   2.6e+03      58      72 ..     370     384 ..     333     392 .. 0.59

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 2.3e-33
                 HHHT--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT.ECECTT..EEECEEEEEEHHHHHHHHT--HHHHHHHHHHHCET CS
       XPG_I   1 klmgipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnlskkkskkkkekekkkvevidlekvlkelgltreqlidlaillgcD 94 
                 klmg+py+vAp+EAEAqca+L+ +g+v+a++seD+D+l+F +p +lr+l+  +s+++    k+++++i+l+kvl+ l+++r q++dl+illgcD
  CCE27450.1 146 KLMGVPYIVAPTEAEAQCAELAMAGKVYAAASEDMDTLCFNTPILLRHLT--FSEQR----KEPIQEIRLDKVLEGLNMERPQFVDLCILLGCD 233
                 68***********************************************9..87777....889*****************************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.73
                 ..EEECEEEEEEHHH CS
       XPG_I  58 kekekkkvevidlek 72 
                 +e++kkk+++ + ek
  CCE27450.1 370 NEEKKKKLKQDKKEK 384
                 222333344444433 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.4e-09   1.2e-05       5      54 ..     222     269 ..     219     285 .. 0.82
   2 ?   -1.4   1.1         1   3.6e+03      47      66 ..     365     383 ..     340     389 .. 0.60

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3.4e-09
  5_3_exonuc   5 qiidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenldelkek 54 
                 q++dl  L G   D +  vp++G+ tA kL++e+gsle+++e++++ ++k
  CCE27450.1 222 QFVDLCILLG--CDYLDPVPKVGPTTALKLIREHGSLEKVVEAIEQDSKK 269
                 6788888888..688999************************99853332 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
  5_3_exonuc  47 nldelkekklkekLeenkee 66 
                 +lde k+++ k+kL+++k+e
  CCE27450.1 365 KLDE-KNEEKKKKLKQDKKE 383
                 2333.334556666666544 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.7e-05      0.17       4      34 ..     235     264 ..     233     273 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.7e-05
                 HHTSTT--HHHHHHHHTTT--SHHHHHHS-H CS
       HHH_5   4 LlsvsGiGpktAlallsaGiesvedlaaadv 34 
                 L  v+++Gp tAl+l++   +s+e++++a +
  CCE27450.1 235 LDPVPKVGPTTALKLIRE-HGSLEKVVEAIE 264
                 5669**********9999.778888877744 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.42       8      33 ..     238     263 ..     237     266 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
       HHH_2   8 IrhVGektAklLakrFksldaLkkas 33 
                 +++VG +tA +L ++ +sl++  +a 
  CCE27450.1 238 VPKVGPTTALKLIREHGSLEKVVEAI 263
                 689******************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1800  (0.100396); expected 358.6 (0.02)
Passed bias filter:                      780  (0.0435049); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 2744.71
//
Query:       CCE27451.1  [L=542]
Description: probable acyl-CoA dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-40  137.2   0.1    6.8e-40  136.7   0.1    1.2  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    1.4e-22   80.5   0.0    2.6e-22   79.6   0.0    1.5  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    1.5e-20   73.2   0.1    2.9e-20   72.3   0.1    1.5  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
      2e-19   69.5   0.3    3.9e-19   68.6   0.3    1.5  1  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain
    1.6e-07   31.7   0.0    2.5e-07   31.0   0.0    1.3  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   0.1   1.9e-43   6.8e-40       1     148 [.     374     530 ..     374     532 .. 0.96

  Alignments for each domain:
  == domain 1  score: 136.7 bits;  conditional E-value: 1.9e-43
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------......HHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd......raeasm 90 
                    +kGf v+m+++nheR+++++++l++ r ++ee+++ya++r++fgk+li+h+++r kla+ma ++ea+ ++++ ++ ++++++++      +  ++ 
     CCE27451.1 374 DKGFGVIMTNFNHERIGIIIQCLRFSRVCYEESVKYANKRRTFGKKLIEHPVIRMKLAHMARQIEASYNWLESMIFQCQKMGEHeamlrlGGPIAG 469
                    58******************************************************************************99999****99***** PP

                    HHHHHHHHHHHHHHHHHHHHGGGTTSGGGH...HHHHHHHTHHHHHSSS-HHHHHHHHHHH CS
  Acyl-CoA_dh_1  91 aKlfaselaqevadlamqllGgaGyleeyp...verlyrdarvlrigeGtseiqrniiarr 148
                    +K++ + +++ +a++a q++Gg +y+++++   verlyrd+r++ i +G++ei++++ +r+
     CCE27451.1 470 LKAQSTLTFEFCAREASQIFGGLSYSRGGQggkVERLYRDVRAYAIPGGSEEIMLDLSMRQ 530
                    *************************86666677***********************98887 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   7.2e-26   2.6e-22       1     113 []     139     264 ..     139     264 .. 0.91

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 7.2e-26
                    THHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHH....TTCTSTTS-GGGTS--S........-HHHHHHHHHHHHHH-HHHHH.HHH CS
  Acyl-CoA_dh_N   1 teeqealrdtvrefaeeelaphaaewdeegefprelwkklae....lGllgitvpeeygGagl........dyleaaivaeelaradaglal.llg 83 
                    +e++ alr++vre++e+e++p+++ewde++++p+e++k++++    +Gllg+++p+ey  ag+        d ++++++++el+ra++g+ +  l 
     CCE27451.1 139 NETHAALRAEVREWMENEIEPNVTEWDEAKRVPEEIYKEMGRrgylAGLLGVHYPTEYVPAGVkcvpaeswDLFHEMLLTDELSRAGSGGFVwNLI 234
                    589*************************************9845556899*********9996677888779**************9987776777 PP

                    HHHHTTHHHHHHHS-HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  84 vhsslvapailrfGteeqkrryLpklasge 113
                     + ++++p++++fG+++ k+r +p +++g+
     CCE27451.1 235 GGFGIGCPPVMKFGSQALKDRVMPGILAGD 264
                    799************************996 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.1   8.1e-24   2.9e-20       1      97 []     268     362 ..     268     362 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 8.1e-24
                    EEE---SS-SS-GGG---EE.EEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvktta.aerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfe 95 
                    ++a+TEp+aGsdva+++ +a  ++dg+++++nGeK witn+ +++++++ +rt+++   +g+sl+l++ + pgvs rr++   G+ +  t++++fe
     CCE27451.1 268 CLAITEPDAGSDVANLTCEAkLSEDGKHFIVNGEKKWITNGIWSDYFTTAVRTGGEG-MNGVSLLLIE-RGPGVSTRRMD-CQGVWSSGTTYITFE 360
                    9*******************99999999************************88777.**********.699*******5.799**9********9 PP

                    .. CS
  Acyl-CoA_dh_M  96 dv 97 
                    dv
     CCE27451.1 361 DV 362
                    97 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.3   1.1e-22   3.9e-19       1      73 [.       6      77 ..       6      78 .. 0.92

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 1.1e-22
                EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEEE CS
      Cyt-b5  1 tleelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkylvGkl 73
                t +++++hn+ +d++++++g VYD+++f ++hpGg++++ + aGkDa+++f+++ h+e +++k+  k+ vG l
  CCE27451.1  6 TTSDVASHNKGDDMYIIVDGDVYDITNFQEEHPGGKKILARVAGKDASKIFWKY-HNEGILKKYKGKLQVGSL 77
                5689**************************************************.*99999999555777765 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     7e-11   2.5e-07      10     126 ..     398     513 ..     389     515 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 7e-11
                    HHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHH..HHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2  10 aAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearra..aalavelaiaavdalfe 103
                    + r +++e v++a++r +  +g+kl ++p++ ++la++a +++A    le+ + + +++ + +    + +r+ + +a  +a  + +   +++++ +
     CCE27451.1 398 FSRVCYEESVKYANKRRT--FGKKLIEHPVIRMKLAHMARQIEASYNWLESMIFQCQKMGEHE----AMLRLGGPIAglKAQSTLTFEFCAREASQ 487
                    567789999*******99..*********************************9955544433....4456666666558888899999******* PP

                    HCGGGGGB...TT-HHHHHHHHHHHH CS
  Acyl-CoA_dh_2 104 aaGgsalr...kesplqRlwRDahaa 126
                    ++Gg ++    +  +++Rl+RD++a 
     CCE27451.1 488 IFGGLSYSrggQGGKVERLYRDVRAY 513
                    ******973336789********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 4257.52
//
Query:       CCE27452.1  [L=515]
Description: probable ATP-dependent RNA helicase DHH1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-43  148.1   0.0    3.1e-43  147.6   0.0    1.2  1  DEAD             DEAD/DEAH box helicase
      3e-28   98.4   0.8      3e-27   95.2   0.5    2.2  2  Helicase_C       Helicase conserved C-terminal domain
    0.00012   22.1   0.0    0.00022   21.3   0.0    1.4  1  ResIII           Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.12   11.7   0.0       0.27   10.5   0.0    1.5  1  CMS1             U3-containing 90S pre-ribosomal complex subu
       0.69    8.6   5.2        1.2    7.9   5.2    1.3  1  API5             Apoptosis inhibitory protein 5 (API5)


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.0   8.7e-47   3.1e-43       2     175 ..      74     238 ..      73     239 .. 0.95

  Alignments for each domain:
  == domain 1  score: 147.6 bits;  conditional E-value: 8.7e-47
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 +iQ+eaip +l+g+d+l++a+ G+GKT+af+ipvl+++    + ++ ++li++PtreLa qt + +k+++k+++++v++++gg+  rd++ +l+++v+i
  CCE27452.1  74 PIQEEAIPVALTGRDILARAKNGTGKTAAFVIPVLERIN--PKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIMRLQESVHI 170
                 8*************************************5..69**************************************************999*** PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 vvgtpgr++dl  +   +l ++ ++++DEad+ll+ +f + i+++l+         +++rqv+++SAT+p +vk+
  CCE27452.1 171 VVGTPGRILDLAGKSVADLTECPMFIMDEADKLLSIEFTPVIEQLLQFH-------PKDRQVMLFSATFPLSVKD 238
                 **********99777778**************************88777.......68899********977776 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.17   6.2e+02      13      50 ..     114     155 ..     104     174 .. 0.71
   2 !   95.2   0.5   8.3e-31     3e-27       4     111 .]     275     381 ..     272     381 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.17
                 TTTTSEEEEEESSHH..HHHH....HHHHHHHTTSTEEEESTTS CS
  Helicase_C  13 eeeggkilifvntid..rlek....vklllekkgikvavlhgel 50 
                 ++++ ++li v+t++  +  +    +k l ++ gi+v v +g +
  CCE27452.1 114 KVSKIQCLILVPTRElaM--QtsqvCKTLGKHLGINVMVTTGGT 155
                 5667799********641..234567777666699999998865 PP

  == domain 2  score: 95.2 bits;  conditional E-value: 8.3e-31
                 HHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   4 eallellkleeeggkilifvntidrlekvklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 ++l  l+ ++ + ++++if+n+++r+   +ll +k    g+++ + h++++q+ r++++++f++g ++ L+++d + rGidi+ vn+Vinfd+p+n ++
  CCE27452.1 275 HCLNTLF-SKLQINQSIIFCNSTNRV---ELLAKKItelGYSCFYSHARMQQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAET 369
                 4455555.889999************...55544445579*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y +riGR gR+g
  CCE27452.1 370 YLHRIGRSGRYG 381
                 **********86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     6e-08   0.00022      26     170 ..      88     233 ..      69     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 6e-08
                 EEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG......GEEEESSS-B--.......-SEEEEEHHHHHHTH... CS
      ResIII  26 rglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke..igkkvsgdkkkakekdstnkkilvttiqsldadseee 121
                  +l  +  GtGKT    + + er+  k ++ ++l+lvp+++l  qt +  k + +    +  +++  +g ++++ ++ +++ +i+v t  ++       
  CCE27452.1  88 DILARAKNGTGKTAAFvIPVLERINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINvmVTTGGTGLRDDI-MRLQESVHIVVGTPGRILDLA--- 182
                 56777889******99899999***999999****************888777766544455777788888888.999**************9999... PP

                 .....HHHTTT-SEEEEETGGGTTS.TTTHHHHHT-.....--SEEEEEESS-S CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgakkswreilekf.....keavllglTATpe 170
                    +  ++ ++ +++i+DEa +l +  +++ ++e++     k+  ++ ++AT++
  CCE27452.1 183 --GKSVADLTECPMFIMDEADKLLS-IEFTPVIEQLlqfhpKDRQVMLFSATFP 233
                 ..8999999999********99999.5555544433233345577777899975 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.6e-05      0.27     145     208 ..     125     198 ..     120     201 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.6e-05
        CMS1 145 alkklqtkdskvakLFakhikleesvty...........lkksrigiavGtpgRildLleeeslsvdeLkrivlD 208
                 ++++l  + s+v k  +kh+ ++  vt+           l+   + i vGtpgRildL  + +  + e    ++D
  CCE27452.1 125 PTRELAMQTSQVCKTLGKHLGINVMVTTggtglrddimrLQ-ESVHIVVGTPGRILDLAGKSVADLTECPMFIMD 198
                 56777778888888888888776666653333111111044.4599************87777777666666666 PP

>> API5  Apoptosis inhibitory protein 5 (API5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.2   0.00033       1.2     465     518 ..     439     491 ..     424     494 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00033
        API5 465 skaakkargekkqrqqyvppsgklsnkane..ssgkgrgsgsrgrgrggggrGrGr 518
                 ++++ +  g+ +q+     p g++ n + +  + g++ ++g rgrgrg g+rGrG 
  CCE27452.1 439 NAQQPQMGGHPQQQP---MPAGQYGNGNWQsqNGGHNMYNGGRGRGRGRGYRGRGG 491
                 444444555554444...59999999888765667778889999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3740.65
//
Query:       CCE27453.1  [L=579]
Description: uncharacterized protein CPUR_00927 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.15   12.2   0.2        0.4   10.8   0.0    1.8  2  TolA_bind_tri  TolA binding protein trimerisation


Domain annotation for each model (and alignments):
>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.42   7.5e+03      59      73 ..     313     327 ..     312     330 .. 0.78
   2 ?   10.8   0.0   2.2e-05       0.4      21      41 ..     558     578 ..     551     579 .] 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.42
  TolA_bind_tri  59 YldlDerlrkleagg 73 
                    Y++lD+++++ e  +
     CCE27453.1 313 YRELDTVSTETEVNE 327
                    999999999887655 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 2.2e-05
  TolA_bind_tri  21 lelqqqlealqqelreLRGqi 41 
                     +++  l+alq+e++ LRG +
     CCE27453.1 558 ADILADLDALQREVDALRGTM 578
                    678899*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4070.21
//
Query:       CCE27454.1  [L=499]
Description: uncharacterized protein CPUR_00928 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00071   19.4   0.1     0.0028   17.5   0.1    2.1  1  F-box-like  F-box-like
     0.0093   15.8   0.3      0.045   13.6   0.3    2.3  1  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   3.2e-07    0.0028       8      47 ..      30      69 ..      28      70 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.2e-07
  F-box-like  8 iLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlvl 47
                iL +I  +Lp  +Ll+l++++++ r+++++tp + r+l l
  CCE27454.1 30 ILRHITPHLPIHSLLQLSATSKSIRSLIRTTPGVFRHLDL 69
                67788889**************************999986 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.3     5e-06     0.045      10      39 ..      30      59 ..      20      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5e-06
                HHHHHHHTS-HHHHHHHCTT-HHHHHHHTT CS
       F-box 10 vlrhILerLplsdllalrrVSkgwrilids 39
                +lrhI  +Lp  +ll l+ +Sk+ r+li+ 
  CCE27454.1 30 ILRHITPHLPIHSLLQLSATSKSIRSLIRT 59
                8899999********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3450.89
//
Query:       CCE27455.1  [L=466]
Description: related to actin-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-91  307.2   0.0    1.3e-90  303.9   0.0    1.9  1  Actin     Actin


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.9   0.0   7.5e-95   1.3e-90       4     405 ..      16     458 ..      14     460 .. 0.93

  Alignments for each domain:
  == domain 1  score: 303.9 bits;  conditional E-value: 7.5e-95
       Actin   4 vsavVlDnGssttraGyageda..Pkavipslvgkprgrkveaklyvgde..altkrpelevrspvedGvvedwdaveelwehvlkeelkvd.....pe 93 
                 ++++++DnG++t++aG  ++       +ip+++++ r r    k y+++e   +++ +e+++r+pve+G++++w+a++e+w++ l+ +         p+
  CCE27455.1  16 TNTLIVDNGAYTLKAGVVSDGHisAPRIIPNCIARDRSR----KTYLASElsRCRDYGEIQLRRPVERGFIVNWEAQKEIWDQELFGHHGGAatacdPA 110
                 789**************99975214589**********9....5677777678889***************************999775443344559* PP

       Actin  94 ehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgks.................tglvvDsGasvtsvvpVldGyvLkkairrsdlg 175
                 e++l+l+epp+  p  +++++++vfE+++++++y++    ++a+ ++++                 + lv+DsG+s+t+v+p l G++L+ a+rr+d+g
  CCE27455.1 111 ETRLILSEPPNGLPVLQQNCDQVVFEEYGFQSYYRGIGSSFNAYHDIQAlfqtprdtptvantpaeVVLVIDSGYSHTTVTPLLRGQPLHSAVRRLDIG 209
                 *************************************************************************************************** PP

       Actin 176 GkaLteqlkellssknvevtprylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpeg.......deekss............ 255
                 Gk+Lt++l +l+s +                                ++++ +e+ +++e+Ke+ c+vs d+++            +            
  CCE27455.1 210 GKFLTNYLGRLISLR--------------------------------HFDMRNETFIVNEMKEAACYVSLDFKTdlerswkG----Trgektkkrdtyt 272
                 **************8................................9*************************977755550....2555555567787 PP

       Actin 256 ...sspeksYeLPDg...........................................seiklgeeRfkvpEiLFdpsligsesaleeekskllgisel 308
                      + ++Y LPD                                            ++++l++eRf vpE+LF+p ++g+ +          g+++l
  CCE27455.1 273 tlgGGIVRDYLLPDFhtrmqgalldydpsrhvkargklaaagagagarglgsapiddeDVLTLRNERFAVPELLFHPADVGMPQP---------GLADL 362
                 888999999***********************************************988***********************999.........***** PP

       Actin 309 ivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaqlaskgvkvkiiapeeerkysaWiGGSiLAslgtfqqlwvskqEYeEqGssvverk 405
                 + +++++++  l+p Llanivv+GG++ ++g+ +Rl++e+ q++++++ v++++p  ++  s+W G++ LA++ +  +++v+k+EYeE Gs ++ + 
  CCE27455.1 363 VWQSLQELPFGLWPGLLANIVVVGGTTQFEGFIQRLQREIVQRVPDDCVVRVARPV-DPVTSTWYGAAHLANHVNIDKMAVTKAEYEELGSTLIAKN 458
                 ********************************************************.***********************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3151.22
//
Query:       CCE27456.1  [L=646]
Description: uncharacterized protein CPUR_00930 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-13   49.9   1.0    0.00045   20.7   0.0    6.3  6  Ank_4       Ankyrin repeats (many copies)
    1.9e-10   40.8   0.2       0.44   10.9   0.0    6.3  7  Ank_5       Ankyrin repeats (many copies)
    7.1e-10   39.3   0.1      0.001   19.6   0.0    5.3  5  Ank_2       Ankyrin repeats (3 copies)
    7.5e-09   35.1   2.0        2.6    8.9   0.0    7.3  7  Ank_3       Ankyrin repeat
    1.8e-06   27.7   0.1    4.3e-06   26.5   0.1    1.6  1  F-box-like  F-box-like
      2e-05   24.8   3.4          6    7.5   0.0    5.7  6  Ank         Ankyrin repeat
  ------ inclusion threshold ------
      0.097   12.6   0.1       0.26   11.2   0.1    1.7  1  F-box       F-box domain


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00022      0.56       3      33 ..     122     154 ..     120     157 .. 0.76
   2 ?    5.0   0.0     0.015        38       4      25 ..     187     208 ..     186     209 .. 0.90
   3 !   20.7   0.0   1.8e-07   0.00045       4      49 ..     227     275 ..     224     281 .. 0.85
   4 ?    2.4   0.0       0.1   2.6e+02      17      35 ..     363     380 ..     360     384 .. 0.84
   5 ?    1.9   0.0      0.14   3.5e+02      15      39 ..     404     427 ..     389     434 .. 0.78
   6 ?   -1.2   0.0       1.3   3.4e+03      24      40 ..     589     604 ..     585     615 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
       Ank_4   3 taLhyaaisgrlelvrlLlekg..adinaqdnr 33 
                 taLh+a+++ +l+l++ Ll+ g   di + ++r
  CCE27456.1 122 TALHHAIAHRNLRLAKKLLDMGarHDIPCLKPR 154
                 89****************987622556666565 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.015
       Ank_4   4 aLhyaaisgrlelvrlLlekga 25 
                 +++ a+i+g+ ++++lL+++ga
  CCE27456.1 187 PIFLAFIHGDPDMAQLLVDRGA 208
                 68999************99885 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 1.8e-07
       Ank_4   4 aLhyaaisgrlel..vrlLlek.gadinaqdnrsGetalhiAakrgnve 49 
                 +Lh aa++  +e+   ++L+++ ++ in+++ +  et+lhiA++ g+v+
  CCE27456.1 227 ILHFAAADTTEEIgqWHFLFDSfRKHINERCTEKEETPLHIALRCGSVQ 275
                 79999*96666665599***8779**********************997 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.1
       Ank_4  17 vrlLlekgadinaqdnrsG 35 
                 +++ l++gad+n++ + sG
  CCE27456.1 363 LHFFLDHGADLNER-SLSG 380
                 78999********9.6666 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.14
       Ank_4  15 elvrlLlekgadinaqdnrsGetal 39 
                 el++ L++kg d+ +  + +G ++l
  CCE27456.1 404 ELLHDLVDKGLDLTRL-PLRGKSPL 427
                 44555569*******9.99999997 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 1.3
       Ank_4  24 gadinaqdnrsGetalh 40 
                 g+di  q + +G+++l+
  CCE27456.1 589 GVDITIQ-DTEGRNPLD 604
                 7899999.888998654 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00017      0.44      17      39 ..     118     143 ..     100     146 .. 0.79
   2 ?    3.0   0.0     0.053   1.4e+02      19      41 ..     187     209 ..     177     212 .. 0.85
   3 !   10.9   0.0   0.00018      0.45      15      42 ..     260     287 ..     251     299 .. 0.74
   4 ?   -1.6   0.0       1.5   3.8e+03      34      46 ..     365     377 ..     362     382 .. 0.74
   5 ?   -1.7   0.0       1.6   4.1e+03       1      27 [.     409     434 ..     409     437 .. 0.84
   6 !    6.6   0.0    0.0039       9.9      35      55 ..     585     605 ..     573     606 .. 0.85
   7 !    5.8   0.0    0.0068        17      37      55 ..     587     605 ..     585     639 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
       Ank_5  17 n...tpLhvAakygaadvvrlLlarg 39 
                 +   t+Lh+A+ +++++++++Ll++g
  CCE27456.1 118 YetpTALHHAIAHRNLRLAKKLLDMG 143
                 15569******************655 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.053
       Ank_5  19 pLhvAakygaadvvrlLlargad 41 
                 p+ +A  +g +d+++lL++rga 
  CCE27456.1 187 PIFLAFIHGDPDMAQLLVDRGAG 209
                 6778999***********88875 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00018
       Ank_5  15 ggntpLhvAakygaadvvrlLlargadl 42 
                 + +tpLh+A ++g+ + ++l l+ ga  
  CCE27456.1 260 KEETPLHIALRCGSVQNMQLALEAGAKM 287
                 334******************9776655 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.5
       Ank_5  34 lLlargadlnltd 46 
                 ++l++gadln + 
  CCE27456.1 365 FFLDHGADLNERS 377
                 4569999999875 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 1.6
       Ank_5   1 LlehgpadvnrldgggntpLhvAakyg 27 
                 L+++g  d+ rl  +g +pL + + + 
  CCE27456.1 409 LVDKG-LDLTRLPLRGKSPLSTVIIKK 434
                 78899.999999999999999988755 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.0039
       Ank_5  35 LlargadlnltdsrGltaldl 55 
                 L+ +g+d++++d +G+++ldl
  CCE27456.1 585 LMREGVDITIQDTEGRNPLDL 605
                 45789***************8 PP

  == domain 7  score: 5.8 bits;  conditional E-value: 0.0068
       Ank_5  37 argadlnltdsrGltaldl 55 
                  +g+d++++d +G+++ldl
  CCE27456.1 587 REGVDITIQDTEGRNPLDL 605
                 579999*********9997 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00039         1      51      79 ..     118     146 ..      67     150 .. 0.68
   2 ?    4.4   0.0     0.022        55      53      76 ..     184     207 ..     156     216 .. 0.59
   3 !   19.6   0.0   3.9e-07     0.001       3      80 ..     190     288 ..     188     291 .. 0.73
   4 ?    0.1   0.0      0.51   1.3e+03      12      35 ..     401     432 ..     360     456 .. 0.52
   5 ?   -0.1   0.0      0.55   1.4e+03      18      37 ..     588     614 ..     573     637 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00039
       Ank_2  51 ndgrtpLhyAarsghleivklLlekgadi 79 
                 ++  t+Lh+A+ + +l+++k Ll+ ga  
  CCE27456.1 118 YETPTALHHAIAHRNLRLAKKLLDMGARH 146
                 556699*****99999****999888865 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.022
       Ank_2  53 grtpLhyAarsghleivklLlekg 76 
                  + p+++A  +g +++++lL+++g
  CCE27456.1 184 QWFPIFLAFIHGDPDMAQLLVDRG 207
                 344555555555555555555544 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 3.9e-07
       Ank_2   3 lAakngnlelvklLl.egadpn.....k.....ngktaLhyAakngnlei..vklLleh........adndgrtpLhyAarsghleivklLlekgadin 80 
                 lA  +g++++ +lL+  ga  +     +         +Lh+Aa  + +ei    +L +          +++ +tpLh+A r+g+ + ++l le ga+++
  CCE27456.1 190 LAFIHGDPDMAQLLVdRGAGREaiispSfvsipSRIPILHFAAADTTEEIgqWHFLFDSfrkhinerCTEKEETPLHIALRCGSVQNMQLALEAGAKME 288
                 566689999999999966443232323144466789999*999999889976699998444455444337899****************9999999876 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.51
       Ank_2  12 lvklLl.....egadpnk...ngktaLhyAak 35 
                 ++k Ll     +g d+      gk++L + ++
  CCE27456.1 401 VLKELLhdlvdKGLDLTRlplRGKSPLSTVII 432
                 33333332212222222123445555544444 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.55
       Ank_2  18 egadpn..k.ngkta....LhyAakng 37 
                 eg+d+   + +g+++    Lh+A+ ++
  CCE27456.1 588 EGVDITiqDtEGRNPldllLHLACDKT 614
                 444433321333333111134444443 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1    0.0018       4.5       4      27 ..     122     144 ..     120     145 .. 0.94
   2 ?    2.1   0.0      0.17   4.3e+02       5      27 ..     187     208 ..     184     211 .. 0.87
   3 ?   -0.5   0.0       1.2   3.1e+03       5      23 ..     227     247 ..     225     255 .. 0.75
   4 !    8.9   0.0     0.001       2.6       3      23 ..     262     282 ..     260     286 .. 0.75
   5 ?    4.2   0.0     0.034        87      17      30 ..     362     374 ..     348     375 .. 0.77
   6 ?   -1.9   0.0       3.2   8.3e+03       2      27 ..     423     450 ..     422     452 .. 0.67
   7 ?    1.9   0.0      0.19   4.8e+02       5      16 ..     606     617 ..     603     628 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0018
       Ank_3   4 tpLhlAarsgnleivkfLlenkga 27 
                 t+Lh+A+ + nl ++k Ll+ +ga
  CCE27456.1 122 TALHHAIAHRNLRLAKKLLD-MGA 144
                 9******************9.886 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
       Ank_3   5 pLhlAarsgnleivkfLlenkga 27 
                 p++lA  +g+++++++L++ +ga
  CCE27456.1 187 PIFLAFIHGDPDMAQLLVD-RGA 208
                 77888899***********.887 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.2
       Ank_3   5 pLhlAarsgnlei..vkfLle 23 
                 +Lh+Aa  +  ei   +fL++
  CCE27456.1 227 ILHFAAADTTEEIgqWHFLFD 247
                 79****999988877777776 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.001
       Ank_3   3 etpLhlAarsgnl.eivkfLle 23 
                 etpLh+A+r+g++ + +++ le
  CCE27456.1 262 ETPLHIALRCGSVqN-MQLALE 282
                 8**********9843.555555 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.034
       Ank_3  17 ivkfLlenkgadvn 30 
                 i++f+l+ +gad+n
  CCE27456.1 362 ILHFFLD-HGADLN 374
                 69*****.9****9 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 3.2
       Ank_3   2 GetpLhlAarsgnle...ivkfLlenkga 27 
                 G +pL +++   +     + ++L++ kga
  CCE27456.1 423 GKSPLSTVIIKKDAQpawLFDLLCK-KGA 450
                 7788888888777733346777777.676 PP

  == domain 7  score: 1.9 bits;  conditional E-value: 0.19
       Ank_3   5 pLhlAarsgnle 16 
                 +LhlA+  ++++
  CCE27456.1 606 LLHLACDKTDCS 617
                 8*****999985 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   1.7e-09   4.3e-06       4      44 ..      27      65 ..      24      66 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.7e-09
  F-box-like  4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrr 44
                LP Ei   I s+L+++ L+rl + Cr W++++   p+L++r
  CCE27456.1 27 LPREIKTLIISQLNLEALSRLGQSCRTWYQFT--LPELYTR 65
                9******************************9..679*987 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.7     0.023        58       4      25 ..     122     144 ..     122     150 .. 0.83
   2 ?   -1.3   0.0       1.5   3.7e+03      13      25 ..     195     208 ..     187     209 .. 0.76
   3 !    7.5   0.0    0.0023         6       3      19 ..     262     275 ..     260     293 .. 0.73
   4 !    6.7   0.0    0.0041        11      15      29 ..     360     375 ..     342     378 .. 0.74
   5 ?   -3.7   0.0         7   1.8e+04      16      23 ..     400     407 ..     397     412 .. 0.75
   6 ?    0.1   0.0      0.52   1.3e+03       6      11 ..     607     613 ..     606     633 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.023
                 BHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGA 25 
                 T+LH A+   ++r +k LL  GA
  CCE27456.1 122 TALHHAIAHRNLRLAKKLLdMGA 144
                 9*****97788999999994476 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
                 TTHHHHHHHH.TTT CS
         Ank  13 gkkriiklLL.hGA 25 
                 g++++++lL+ +GA
  CCE27456.1 195 GDPDMAQLLVdRGA 208
                 66889999996576 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0023
                 BBHHHHHHHHTTHHHHH CS
         Ank   3 nTPLHlAatngkkriik 19 
                  TPLH+A ++g    ++
  CCE27456.1 262 ETPLHIALRCG---SVQ 275
                 6******9999...444 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0041
                 HHHHHHHH.TTTSTTC CS
         Ank  15 kriiklLL.hGAnlna 29 
                  +i++++L hGA+ln 
  CCE27456.1 360 RHILHFFLdHGADLNE 375
                 4599**********96 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 7
                 HHHHHHHT CS
         Ank  16 riiklLLh 23 
                 +++k+LLh
  CCE27456.1 400 EVLKELLH 407
                 48899995 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.52
                 HHHHH.H CS
         Ank   6 LHlAa.t 11 
                 LHlA+  
  CCE27456.1 607 LHLACdK 613
                 9***942 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0001      0.26       6      36 ..      27      57 ..      23      59 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
                S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHH CS
       F-box  6 LPsevlrhILerLplsdllalrrVSkgwril 36
                LP e+   I+++L+l  l +l + +++w+++
  CCE27456.1 27 LPREIKTLIISQLNLEALSRLGQSCRTWYQF 57
                9***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4211.58
//
Query:       CCE27457.1  [L=659]
Description: uncharacterized protein CPUR_00931 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-09   37.0   0.2      0.027   14.8   0.0    4.7  4  Ank_5       Ankyrin repeats (many copies)
    6.9e-09   36.1   1.7     0.0031   18.1   0.0    5.1  5  Ank_4       Ankyrin repeats (many copies)
    2.3e-08   34.5   0.0      0.001   19.6   0.0    3.4  3  Ank_2       Ankyrin repeats (3 copies)
    3.9e-06   26.8   0.8        1.3    9.9   0.0    5.8  6  Ank_3       Ankyrin repeat
    0.00035   20.9   0.3        2.6    8.7   0.0    4.3  4  Ank         Ankyrin repeat
     0.0042   17.0   0.0     0.0093   15.8   0.0    1.6  1  F-box-like  F-box-like
  ------ inclusion threshold ------
       0.03   14.2   0.0      0.072   13.0   0.0    1.6  1  F-box       F-box domain
       0.12   12.5   0.0       0.23   11.6   0.0    1.4  1  LAM_C       Lysine-2,3-aminomutase


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   9.2e-05      0.21      16      39 ..     113     142 ..      99     147 .. 0.75
   2 !   14.8   0.0   1.2e-05     0.027      17      53 ..     261     297 ..     248     297 .. 0.84
   3 ?   -0.7   0.0      0.86   1.9e+03      33      46 ..     363     376 ..     361     383 .. 0.70
   4 ?    3.8   0.0     0.033        75      39      55 ..     586     602 ..     580     603 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.2e-05
       Ank_5  16 gn......tpLhvAakygaadvvrlLlarg 39 
                 g+      t+Lh+A+ +++++++++Ll++g
  CCE27457.1 113 GQkvyknpTALHQAIAQRNLRLAKKLLDMG 142
                 44456667*******************555 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.2e-05
       Ank_5  17 ntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 +tpLh+A ++g+++ ++l l+ ga + + +++ lt+l
  CCE27457.1 261 ETPLHIALRCGSLQSMQLALEAGAKTETNNGSLLTPL 297
                 3*******************88888888888888886 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.86
       Ank_5  33 rlLlargadlnltd 46 
                 +++l++gadln + 
  CCE27457.1 363 NFFLDHGADLNERS 376
                 56678899888775 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.033
       Ank_5  39 gadlnltdsrGltaldl 55 
                 g+d++++++ G+++l+l
  CCE27457.1 586 GVDITMRNEAGQNPLEL 602
                 79*************97 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00093       2.1       3      26 ..     121     144 ..     119     168 .. 0.85
   2 !   18.1   0.0   1.4e-06    0.0031       4      54 ..     226     279 ..     223     280 .. 0.86
   3 ?    1.5   0.0      0.21   4.7e+02      16      32 ..     361     376 ..     357     409 .. 0.79
   4 ?   -1.2   0.0       1.5   3.4e+03      15      34 ..     403     421 ..     397     424 .. 0.82
   5 ?    1.5   0.0      0.22     5e+02      20      39 ..     582     600 ..     579     600 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00093
       Ank_4   3 taLhyaaisgrlelvrlLlekgad 26 
                 taLh+a+++ +l+l++ Ll+ ga 
  CCE27457.1 121 TALHQAIAQRNLRLAKKLLDMGAR 144
                 89*****************87754 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.4e-06
       Ank_4   4 aLhyaaisgrlel..vrlLlek.gadinaqdnrsGetalhiAakrgnveilklL 54 
                 +Lh aa++  +e+   r+L++k ++ in ++ +  et+lhiA++ g+++  +l 
  CCE27457.1 226 ILHFAAADTTEEIgqWRFLFAKfRKHINQRCTEMEETPLHIALRCGSLQSMQLA 279
                 799****66666655*****9879******9999*************9988876 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.21
       Ank_4  16 lvrlLlekgadinaqdn 32 
                 ++ + l++gad+n++ +
  CCE27457.1 361 ALNFFLDHGADLNER-S 376
                 578899*******99.5 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.5
       Ank_4  15 elvrlLlekgadinaqdnrs 34 
                 el++ L++kg d+ +  + +
  CCE27457.1 403 ELLHDLIDKGLDLTRL-PLR 421
                 6788999*****9997.655 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.22
       Ank_4  20 LlekgadinaqdnrsGetal 39 
                 L + g+di ++ n+ G+++l
  CCE27457.1 582 LMSDGVDITMR-NEAGQNPL 600
                 5578*******.****9997 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00028      0.64      44      79 ..     107     145 ..      66     148 .. 0.66
   2 !   19.6   0.0   4.6e-07     0.001      25      81 ..     222     288 ..     187     290 .. 0.70
   3 ?   -1.4   0.0       1.7   3.8e+03      28      28 ..     381     381 ..     358     452 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00028
       Ank_2  44 lLleh..ad.ndgrtpLhyAarsghleivklLlekgadi 79 
                  + e+  ++ +++ t+Lh A+ + +l+++k Ll+ ga  
  CCE27457.1 107 VISEQegQKvYKNPTALHQAIAQRNLRLAKKLLDMGARH 145
                 33333443356677*********9*********888865 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 4.6e-07
       Ank_2  25 ngktaLhyAakngnlei..vklLleh......ad..ndgrtpLhyAarsghleivklLlekgadinl 81 
                 +   +Lh+Aa  + +ei   ++L ++      ++  +  +tpLh+A r+g+l+ ++l le ga+ ++
  CCE27457.1 222 CRIPILHFAAADTTEEIgqWRFLFAKfrkhinQRctEMEETPLHIALRCGSLQSMQLALEAGAKTET 288
                 66789**9999998899777****9555565522557899****************99999987665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.7
       Ank_2  28 t 28 
                 +
  CCE27457.1 381 N 381
                 0 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.5   1.5e+04       9      25 ..      23      37 ..      16      41 .. 0.70
   2 !    6.6   0.0    0.0067        15       4      27 ..     121     143 ..     118     144 .. 0.92
   3 ?   -2.3   0.0       5.2   1.2e+04       5      27 ..     186     207 ..     184     208 .. 0.83
   4 ?    0.2   0.0      0.76   1.7e+03       5      27 ..     226     250 ..     223     254 .. 0.78
   5 !    9.9   0.0   0.00056       1.3       3      26 ..     261     283 ..     259     287 .. 0.83
   6 ?    1.9   0.0      0.23   5.1e+02      18      30 ..     362     373 ..     351     374 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.5
       Ank_3  9 AarsgnleivkfLlenk 25
                 +++ ++e +k+L+  +
  CCE27457.1 23 LLMNVPPE-IKLLIM-Y 37
                55666778.999998.5 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0067
       Ank_3   4 tpLhlAarsgnleivkfLlenkga 27 
                 t+Lh+A+ + nl ++k Ll+ +ga
  CCE27457.1 121 TALHQAIAQRNLRLAKKLLD-MGA 143
                 9******************9.886 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5.2
       Ank_3   5 pLhlAarsgnleivkfLlenkga 27 
                 p++lA+   ++++ ++L++ +ga
  CCE27457.1 186 PIFLALFVRDPDMGQLLVD-RGA 207
                 6788888899999999999.786 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.76
       Ank_3   5 pLhlAarsgnlei..vkfLlenkga 27 
                 +Lh+Aa  +  ei   +fL+ ++  
  CCE27457.1 226 ILHFAAADTTEEIgqWRFLFAKFRK 250
                 79*****999998888888876555 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00056
       Ank_3   3 etpLhlAarsgnleivkfLlenkg 26 
                 etpLh+A+r+g+l  +++ le  g
  CCE27457.1 261 ETPLHIALRCGSLQSMQLALE-AG 283
                 8***********976888887.55 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.23
       Ank_3  18 vkfLlenkgadvn 30 
                 + f+l+ +gad+n
  CCE27457.1 362 LNFFLD-HGADLN 373
                 8899**.9****9 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.088     2e+02       4      25 ..     121     143 ..     121     149 .. 0.82
   2 !    8.7   0.0    0.0011       2.6       3      22 ..     261     280 ..     259     290 .. 0.78
   3 ?    4.1   0.0     0.032        71      16      29 ..     357     374 ..     337     377 .. 0.77
   4 ?   -3.7   0.0         8   1.8e+04      15      24 ..     402     412 ..     393     416 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.088
                 BHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGA 25 
                 T+LH A+   ++r +k LL  GA
  CCE27457.1 121 TALHQAIAQRNLRLAKKLLdMGA 143
                 9****997888999999994476 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0011
                 BBHHHHHHHHTTHHHHHHHH CS
         Ank   3 nTPLHlAatngkkriiklLL 22 
                  TPLH+A ++g+++  +l L
  CCE27457.1 261 ETPLHIALRCGSLQSMQLAL 280
                 7******9***988877645 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.032
                 HHHHHH...H.TTTSTTC CS
         Ank  16 riiklL...L.hGAnlna 29 
                 ++i++L   L hGA+ln 
  CCE27457.1 357 DMIHALnffLdHGADLNE 374
                 577765555*99****96 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 8
                 HHHHHHHH.TT CS
         Ank  15 kriiklLL.hG 24 
                 k+ +++L+ +G
  CCE27457.1 402 KELLHDLIdKG 412
                 56778888556 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.1e-06    0.0093       4      42 ..      27      63 ..      24      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.1e-06
  F-box-like  4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLW 42
                 P+Ei l I  ++ + +L+rl + C  W++++   p+L+
  CCE27457.1 27 VPPEIKLLIMYHMTLGTLSRLGQSCQTWYQLT--LPELY 63
                6*********999999***************9..66898 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.2e-05     0.072       4      36 ..      25      57 ..      23      59 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
                HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHH CS
       F-box  4 srLPsevlrhILerLplsdllalrrVSkgwril 36
                 ++P+e+ + I+ ++ l +l +l + + +w++l
  CCE27457.1 25 MNVPPEIKLLIMYHMTLGTLSRLGQSCQTWYQL 57
                589****************************98 PP

>> LAM_C  Lysine-2,3-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0001      0.23      36      92 ..     530     586 ..     516     598 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
       LAM_C  36 sqsedkvvlrnfeGvitsypePenyvkgkaddyfkevypdtekkkeevGisallede 92 
                 ++s +++v r+f G  t++ eP +    +    f +v+p ++       is+l++d 
  CCE27457.1 530 AWSWSRIVAREFKGNFTTWDEPGKESILHGTIRFFKVVPGYSAADAIQDISKLMSDG 586
                 79999*****************88866666667888889998888889999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4587.99
//
Query:       CCE27458.1  [L=1200]
Description: uncharacterized protein CPUR_00932 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-12   45.8   0.0      1e-10   41.4   0.0    2.5  3  PIF1        PIF1-like helicase
    2.1e-10   40.9   1.0    7.9e-06   26.3   0.0    4.7  5  Ank_4       Ankyrin repeats (many copies)
    3.2e-08   34.1   0.0     0.0001   22.8   0.0    3.5  3  Ank_2       Ankyrin repeats (3 copies)
    4.7e-08   33.2   1.1     0.0068   16.7   0.0    5.2  5  Ank_5       Ankyrin repeats (many copies)
    8.3e-08   32.2   0.0    3.5e-07   30.1   0.0    1.9  1  AAA_30      AAA domain
    1.4e-06   28.4   0.1       0.29   11.6   0.0    4.7  4  Ank         Ankyrin repeat
    1.2e-05   25.3   0.1       0.24   12.1   0.0    5.2  4  Ank_3       Ankyrin repeat
    1.4e-05   24.9   0.3    5.1e-05   23.1   0.1    2.0  2  F-box-like  F-box-like
    0.00093   19.6   0.0     0.0021   18.4   0.0    1.5  1  AAA_19      AAA domain


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   5.1e-14     1e-10       2     143 ..     341     498 ..     340     559 .. 0.85
   2 ?   -3.8   0.0       2.7   5.3e+03     260     285 ..     574     599 ..     567     606 .. 0.80
   3 ?    1.5   0.0     0.069   1.4e+02     331     354 ..     631     654 ..     613     658 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 5.1e-14
                 --HHHHHHHHHH............HCTS-EEEEESTTSSCHHHHHHHHHHCHC..........TCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS- CS
        PIF1   2 LneeQkkvfdaiie....avln..ekgklfFvtGsgGtgKtflwkallkklrs..........egkivlavAssGvAalllegGrtahsrfkiplekde 84 
                 Ln eQ+  f++++e    a+      +  + v+G +GtgK++  + +++ l++          +++ v+ +A +G Aa+ + +G t h+ f++p++  e
  CCE27458.1 341 LNPEQRLLFETVVEhygrAIDGlsPDPLRINVDGRAGTGKSYTIQLVSSRLETmqrsrfptspRRSPVARIAPTGAAANGI-QGYTDHAYFGLPVQRFE 438
                 8899999999998833222222224566899***********9998888876544446666667889**************.9************9866 PP

                 H.HHHHHHTSCCCHHHHHC-SEEEEECGGGSBHHHHHHHHHHHHHHCT-...-SCC.CC-E CS
        PIF1  85 e.stckikrgsklaellkktsliiwDEapmverecfealdrtlrdilkekeidkpF.GGkt 143
                 + s +       l+++l+ +s +i+DE +m++   +  +d+ lr+   e++ d pF GG++
  CCE27458.1 439 TlSPLGPDGVGALRRRLEGVSYLIVDEKSMISLVKLAWIDQRLRQAYPESN-DDPFaGGMA 498
                 51566777788999**********************************999.99*944444 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.7
                 ........EEEESSCCHHHHHHHHHH CS
        PIF1 260 dkeyleerailcptnedvdeiNnyvl 285
                  +++ e+ + l +t+++v+e+N ++l
  CCE27458.1 574 RTTFEEQAVYLFATRDSVNEMNYSRL 599
                 556777788899*********98877 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.069
                 SCEEE-TT-EEEE-S--CTT-SC- CS
        PIF1 331 hvLkLkvGvpvmllrNldqsaGLc 354
                  +L L +G+ vml  N+ ++aGL 
  CCE27458.1 631 AELLLSIGARVMLTTNIWAEAGLT 654
                 56889*****************95 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.012        25       4      32 ..     807     836 ..     804     843 .. 0.77
   2 ?   -0.9   0.0       1.4   2.7e+03       4      25 ..     864     885 ..     864     888 .. 0.91
   3 !   26.3   0.0   3.9e-09   7.9e-06       4      55 .]     898     952 ..     896     952 .. 0.90
   4 ?    2.9   0.0      0.09   1.8e+02      17      39 ..    1026    1047 ..    1024    1051 .. 0.88
   5 ?   -2.7   0.0       4.9   9.8e+03      24      40 ..    1137    1152 ..    1135    1155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.012
       Ank_4   4 aLhyaaisgrlelvrlLlekgad..inaqdn 32 
                 aLhya+   +l+l++ Ll+ ga   i +  n
  CCE27458.1 807 ALHYAIVGKNLRLAKKLLDMGARhdIPCL-N 836
                 8*****************87754335444.4 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.4
       Ank_4   4 aLhyaaisgrlelvrlLlekga 25 
                 +++ a+i+++ ++ +lL+++ga
  CCE27458.1 864 PIFLAFIHSDPDMGQLLVDRGA 885
                 6899**************9885 PP

  == domain 3  score: 26.3 bits;  conditional E-value: 3.9e-09
       Ank_4   4 aLhyaai..sgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +Lh aa+    ++   r+L+++ ++ i++++ ++ et+lhiA++rg+++ +++ l
  CCE27458.1 898 ILHLAAAdqTRDIGQWRFLFDRfRKHIDERCTGNEETPLHIALRRGSIQSVQFAL 952
                 6888888777778889*****989****************************986 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.09
       Ank_4   17 vrlLlekgadinaqdnrsGetal 39  
                  + + l++gad+n++ + sGe al
  CCE27458.1 1026 LNFFLDHGADLNER-SLSGEIAL 1047
                  56889*********.99999887 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 4.9
       Ank_4   24 gadinaqdnrsGetalh 40  
                  g+di  + n++G++ l+
  CCE27458.1 1137 GMDITIR-NENGRNSLD 1152
                  899****.****99875 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0054        11      51      79 ..     802     830 ..     751     834 .. 0.70
   2 !   22.8   0.0   5.1e-08    0.0001       9      82 ..     873     961 ..     865     962 .. 0.74
   3 ?   -1.2   0.0       1.6   3.1e+03      12      81 ..    1025    1038 ..     983    1070 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0054
       Ank_2  51 ndgrtpLhyAarsghleivklLlekgadi 79 
                 ++  ++LhyA+  ++l+++k Ll+ ga  
  CCE27458.1 802 YETPNALHYAIVGKNLRLAKKLLDMGARH 830
                 44557999999989999999999888865 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 5.1e-08
       Ank_2   9 nlelvklLl.egadpn..k..ngktaLhyAakngnlei..vklLleh....ad....ndgrtpLhyAarsghleivklLlekgadinlk 82 
                 ++++ +lL+  ga  +     +  ++Lh+Aa  + ++i   ++L +     +d     + +tpLh+A r g+++ v++ le ga+ +++
  CCE27458.1 873 DPDMGQLLVdRGAGRDamIrgTPISILHLAAADQTRDIgqWRFLFDRfrkhIDerctGNEETPLHIALRRGSIQSVQFALEVGANTEVQ 961
                 567888898855444433246789*********999*9877****9444454455335577******************9989987765 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.6
       Ank_2   12 lvklLl.egadpnkngktaLhyAakngnleivklLlehadndgrtpLhyAarsghleivklLlekgadinl 81  
                  +++++l +gad+n                                                          
  CCE27458.1 1025 ILNFFLdHGADLN---------------------------------------------------------E 1038
                  4455555555555.........................................................3 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         3     6e+03      30      49 ..     539     560 ..     536     562 .. 0.83
   2 !    8.1   0.0    0.0017       3.4       5      39 ..     786     827 ..     783     840 .. 0.82
   3 !   16.7   0.0   3.4e-06    0.0068      13      53 ..     931     969 ..     923     970 .. 0.89
   4 ?    0.7   0.0      0.36   7.1e+02      32      53 ..    1026    1047 ..    1024    1049 .. 0.84
   5 ?    0.2   0.0      0.52     1e+03      39      55 ..    1137    1153 ..    1131    1154 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3
       Ank_5  30 dvvrlLl..argadlnltdsrG 49 
                   +r+ l  +r+ +++ltd+r 
  CCE27458.1 539 IAFRRVLenMRQGNPDLTDFRT 560
                 67888999999********985 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0017
       Ank_5   5 g.padvnrldgggn......tpLhvAakygaadvvrlLlarg 39 
                 g ++dv   +++g+      ++Lh+A+ + +++++++Ll++g
  CCE27458.1 786 GgQVDVILGQREGQtlyetpNALHYAIVGKNLRLAKKLLDMG 827
                 55677777777777778888*******************554 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 3.4e-06
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 ++  +tpLh+A ++g+ + v++ l+ ga++ ++++  lt+l
  CCE27458.1 931 NE--ETPLHIALRRGSIQSVQFALEVGANTEVQNAALLTPL 969
                 33..3**********************************98 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.36
       Ank_5   32 vrlLlargadlnltdsrGltal 53  
                  ++++l++gadln +  +G+ al
  CCE27458.1 1026 LNFFLDHGADLNERSLSGEIAL 1047
                  67889*******9998888776 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.52
       Ank_5   39 gadlnltdsrGltaldl 55  
                  g+d+++++++G++ ldl
  CCE27458.1 1137 GMDITIRNENGRNSLDL 1153
                  789********999997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.8e-10   3.5e-07      23     114 ..     372     483 ..     358     565 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.8e-10
      AAA_30  23 ltGpAGtGKttalkalreaweaag..........grviglAptgkaAkvLa.....eelgieastiakllkrlk......grarlepgtllivDEagmv 100
                 + G+AGtGK+++++ +   +e+ +           +v+ +Aptg+aA+ ++     + +g++ ++ + l   l+       r rle  + livDE +m+
  CCE27458.1 372 VDGRAGTGKSYTIQLVSSRLETMQrsrfptsprrSPVARIAPTGAAANGIQgytdhAYFGLPVQRFETLS-PLGpdgvgaLRRRLEGVSYLIVDEKSMI 469
                 78**************88888886689******99****************4433334455666666555.44479999744677777*********** PP

      AAA_30 101 dtkqlaallkaaek 114
                 +  +la + +++++
  CCE27458.1 470 SLVKLAWIDQRLRQ 483
                 99998876666555 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.2     0.008        16       5      25 ..     807     828 ..     806     837 .. 0.84
   2 ?   -1.8   0.0       2.7   5.3e+03       6      11 ..     899     907 ..     897     915 .. 0.74
   3 !   11.6   0.0   0.00015      0.29       2      31 ..     932     962 ..     931     963 .. 0.81
   4 ?    4.1   0.0     0.035        69      13      29 ..    1024    1038 ..    1009    1041 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.008
                 HHHHHHHHTTHHHHHHHH.TTT CS
         Ank   5 PLHlAatngkkriiklLL.hGA 25 
                 +LH+A+ ++++r +k LL  GA
  CCE27458.1 807 ALHYAIVGKNLRLAKKLLdMGA 828
                 8*****9999*****9994486 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.7
                 HHHHH...H CS
         Ank   6 LHlAa...t 11 
                 LHlAa   t
  CCE27458.1 899 LHLAAadqT 907
                 9**995553 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00015
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                   TPLH+A ++g+ + +++ L  GAn   ++
  CCE27458.1 932 EETPLHIALRRGSIQSVQFALeVGANTEVQN 962
                 67****************7563399977665 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.035
                  TTHHHHHHHH.TTTSTTC CS
         Ank   13 gkkriiklLL.hGAnlna 29  
                      i+ ++L hGA+ln 
  CCE27458.1 1024 H---ILNFFLdHGADLNE 1038
                  3...9999**9*****96 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.29   5.7e+02       5      27 ..     807     828 ..     805     829 .. 0.91
   2 ?    2.0   0.0      0.22   4.5e+02       4      23 ..     897     918 ..     895     926 .. 0.83
   3 !   12.1   0.0   0.00012      0.24       2      28 ..     932     957 ..     931     960 .. 0.88
   4 ?    1.9   0.0      0.24   4.8e+02      17      30 ..    1025    1037 ..    1014    1038 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.29
       Ank_3   5 pLhlAarsgnleivkfLlenkga 27 
                 +Lh+A+   nl ++k Ll+ +ga
  CCE27458.1 807 ALHYAIVGKNLRLAKKLLD-MGA 828
                 8*****************9.886 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.22
       Ank_3   4 tpLhlAarsgnlei..vkfLle 23 
                 ++LhlAa  +  +i   +fL++
  CCE27458.1 897 SILHLAAADQTRDIgqWRFLFD 918
                 79********999988888887 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00012
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                  etpLh+A+r g++  v+f le  ga+
  CCE27458.1 932 EETPLHIALRRGSIQSVQFALE-VGAN 957
                 69************88*****9.7876 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.24
       Ank_3   17 ivkfLlenkgadvn 30  
                  i+ f+l+ +gad+n
  CCE27458.1 1025 ILNFFLD-HGADLN 1037
                  699****.9****9 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.2   8.4e+03       3      19 ..     160     177 ..     159     189 .. 0.72
   2 !   23.1   0.1   2.5e-08   5.1e-05       3      44 ..     710     749 ..     708     750 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.2
  F-box-like   3 rLPdEiLlqIFsyL.pps 19 
                 r Pd i++++ +y+ +p+
  CCE27458.1 160 RVPDRIICYVPRYRsDPE 177
                 56999**99999985544 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 2.5e-08
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrr 44 
                 + P Ei + I s+L++  ++rl + Cr W++v+   p+L++r
  CCE27458.1 710 HMPREINVLIISHLDLDVISRLGQSCRAWYQVT--LPELYSR 749
                 89******************************9..679*987 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     1e-06    0.0021      15     122 ..     372     477 ..     358     486 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1e-06
      AAA_19  15 vtaGpGtGKTrvlkhivallvelggvkp......eeillvaftgrAakelrerlaa..lgaeatTiHrlalldfddlltealelleeaeeekklqeee. 104
                 v + +GtGK+++++ + + l+ +++          +++ +a+tg Aa+ ++  ++   +g++ + +  l+ l+ d+       +l+     + l e+  
  CCE27458.1 372 VDGRAGTGKSYTIQLVSSRLETMQRSRFptsprrSPVARIAPTGAAANGIQGYTDHayFGLPVQRFETLSPLGPDGVG-----ALR-----RRL-EGVs 459
                 6788**********9999998888766578899899***************988541156778888888666666655.....555.....356.5555 PP

      AAA_19 105 llivDEfqdvdelqyrLl 122
                 +livDE ++++ +  + +
  CCE27458.1 460 YLIVDEKSMISLVKLAWI 477
                 **********97766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 7733.86
//
Query:       CCE27459.1  [L=645]
Description: uncharacterized protein CPUR_00933 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-10   39.1   2.0     0.0013   19.2   0.0    5.7  6  Ank_4       Ankyrin repeats (many copies)
    1.6e-09   37.9   1.3     0.0041   17.4   0.1    4.7  4  Ank_5       Ankyrin repeats (many copies)
    8.1e-08   32.7   0.0     0.0053   17.3   0.0    3.7  4  Ank_2       Ankyrin repeats (3 copies)
    0.00012   22.3   7.1          5    8.0   0.0    6.4  6  Ank_3       Ankyrin repeat
    0.00031   20.6   0.0    0.00083   19.2   0.0    1.7  1  F-box-like  F-box-like
  ------ inclusion threshold ------
      0.017   15.5   3.2        5.3    7.7   0.3    4.5  4  Ank         Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00034         1       3      25 ..     122     144 ..     120     169 .. 0.84
   2 ?   -2.7   0.0       3.3   9.8e+03       4      24 ..     197     217 ..     192     218 .. 0.81
   3 !   19.2   0.0   4.4e-07    0.0013       4      48 ..     237     284 ..     234     293 .. 0.87
   4 ?    2.3   0.0     0.088   2.6e+02      17      36 ..     365     383 ..     363     386 .. 0.83
   5 ?   -0.1   0.0      0.53   1.6e+03       6      30 ..     395     421 ..     392     437 .. 0.69
   6 ?   -0.3   0.0      0.61   1.8e+03      24      40 ..     593     612 ..     588     627 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00034
       Ank_4   3 taLhyaaisgrlelvrlLlekga 25 
                 taLhya+i  +l+l++ Ll+ ga
  CCE27459.1 122 TALHYAIIRRNLRLAKKLLDMGA 144
                 78999999999999999998765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.3
       Ank_4   4 aLhyaaisgrlelvrlLlekg 24 
                 +++ a++  + ++ +lL+++g
  CCE27459.1 197 PIFLAFMRKDPDMGQLLVDRG 217
                 578888888888889998877 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 4.4e-07
       Ank_4   4 aLhyaai..sgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnv 48 
                 +Lh +a+  +g++   r+L+++ +  in+++ ++Get+lh A++ g +
  CCE27459.1 237 ILHLLASedMGDIGQWRFLFDHfREHINERCTEEGETLLHTALRCGAI 284
                 79999999*************98899*****************88843 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.088
       Ank_4  17 vrlLlekgadinaqdnrsGe 36 
                 + + l++gad+n++ + sG 
  CCE27459.1 365 LNFFLDHGADLNER-SLSGT 383
                 67899********9.88776 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.53
       Ank_4   6 hyaai..sgrlelvrlLlekgadinaq 30 
                 h+a +  +  +el++ L++kg d+   
  CCE27459.1 395 HAAPAamEALEELLHDLIDKGLDLRSL 421
                 555555466678899999*99997665 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.61
       Ank_4  24 gadinaqdnrsGet....alh 40 
                 g+di  + n++G+     +l 
  CCE27459.1 593 GMDITIR-NEDGRHsldlLLL 612
                 8899999.9999984444444 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.3e-05      0.13      15      39 ..     113     143 ..      99     146 .. 0.75
   2 !   17.4   0.1   1.4e-06    0.0041      14      53 ..     269     308 ..     262     308 .. 0.92
   3 ?   -0.8   0.0      0.68     2e+03      34      49 ..     367     382 ..     365     386 .. 0.70
   4 ?    2.1   0.0     0.084   2.5e+02      39      55 ..     593     609 ..     577     610 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.3e-05
       Ank_5  15 ggn......tpLhvAakygaadvvrlLlarg 39 
                 +g+      t+Lh+A+ +++++++++Ll++g
  CCE27459.1 113 EGQtlyetpTALHYAIIRRNLRLAKKLLDMG 143
                 444445556*******************655 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.4e-06
       Ank_5  14 gggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 ++g+t Lh+A ++ga + v++ l+ g++  ++++  lt+l
  CCE27459.1 269 EEGETLLHTALRCGAIQNVQIVLEAGVNMEVQNAALLTPL 308
                 5788******************************999997 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.68
       Ank_5  34 lLlargadlnltdsrG 49 
                 ++l++gadln +  +G
  CCE27459.1 367 FFLDHGADLNERSLSG 382
                 6778999998876555 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.084
       Ank_5  39 gadlnltdsrGltaldl 55 
                 g+d+++++++G+  ldl
  CCE27459.1 593 GMDITIRNEDGRHSLDL 609
                 89***********9997 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0002       0.6      51      79 ..     118     146 ..      67     150 .. 0.72
   2 !   17.3   0.0   1.8e-06    0.0053       5      82 ..     202     300 ..     190     301 .. 0.71
   3 ?   -2.7   0.0       3.2   9.5e+03      68      82 ..     364     378 ..     359     379 .. 0.78
   4 ?   -2.6   0.0       2.8   8.5e+03      11      37 ..     406     438 ..     395     458 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
       Ank_2  51 ndgrtpLhyAarsghleivklLlekgadi 79 
                 ++  t+LhyA+   +l+++k Ll+ ga  
  CCE27459.1 118 YETPTALHYAIIRRNLRLAKKLLDMGARH 146
                 44558888888888888888888777755 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.8e-06
       Ank_2   5 akngnlelvklLl.egadpn....k......ngktaLhyAakngnlei..vklLleh....ad....ndgrtpLhyAarsghleivklLlekgadinlk 82 
                  + +++++ +lL+  ga  +           +   +Lh+ a+++  +i   ++L +h    ++    ++g+t Lh A r+g ++ v++ le g++++++
  CCE27459.1 202 FMRKDPDMGQLLVdRGAGREgmisPpfttapTRIPILHLLASEDMGDIgqWRFLFDHfrehINerctEEGETLLHTALRCGAIQNVQIVLEAGVNMEVQ 300
                 555666777777775533222222022334567889998888755577667*****8877733455589*********************999888776 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.2
       Ank_2  68 ivklLlekgadinlk 82 
                 +++++l++gad+n +
  CCE27459.1 364 TLNFFLDHGADLNER 378
                 567889999999875 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 2.8
       Ank_2  11 elvklLl.egadpn...k..ngktaLhyAakng 37 
                 el++ L+ +g d++   +  ++++aL + +++ 
  CCE27459.1 406 ELLHDLIdKGLDLRslpQplEERSALCTVIIQK 438
                 456666677777665542677788888776655 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0032       9.6       4      27 ..     122     144 ..     120     145 .. 0.94
   2 ?   -0.6   0.0         1   3.1e+03       5      30 ..     237     264 ..     235     265 .. 0.83
   3 !    8.0   0.0    0.0017         5       1      16 [.     270     285 ..     270     296 .. 0.76
   4 ?    2.6   0.0       0.1     3e+02      14      30 ..     362     376 ..     359     377 .. 0.82
   5 ?   -2.7   0.0       5.1   1.5e+04      10      29 ..     400     418 ..     399     419 .. 0.72
   6 ?    1.2   0.1      0.27     8e+02       5      21 ..     610     627 ..     607     633 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0032
       Ank_3   4 tpLhlAarsgnleivkfLlenkga 27 
                 t+Lh+A+   nl ++k Ll+ +ga
  CCE27459.1 122 TALHYAIIRRNLRLAKKLLD-MGA 144
                 9******************9.886 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1
       Ank_3   5 pLhlAarsgnlei..vkfLlenkgadvn 30 
                 +Lhl a+ +  +i   +fL++++   +n
  CCE27459.1 237 ILHLLASEDMGDIgqWRFLFDHFREHIN 264
                 6899999988888889999998888777 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0017
       Ank_3   1 nGetpLhlAarsgnle 16 
                 +Get+Lh+A+r+g + 
  CCE27459.1 270 EGETLLHTALRCGAIQ 285
                 69**********9884 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.1
       Ank_3  14 nleivkfLlenkgadvn 30 
                 +++ + f+l+ +gad+n
  CCE27459.1 362 RHT-LNFFLD-HGADLN 376
                 566.99****.9****9 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 5.1
       Ank_3  10 arsgnleivkfLlenkgadv 29 
                 a+ +  e+++ L++ kg d+
  CCE27459.1 400 AMEALEELLHDLID-KGLDL 418
                 56666678899999.88886 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.27
       Ank_3   5 pLhlAarsgnle.ivkfL 21 
                 +L lA++ ++++ +v fL
  CCE27459.1 610 LLLLACSKTDCSeLVAFL 627
                 799*******96366555 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.8e-07   0.00083       3      42 ..      26      63 ..      24      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.8e-07
  F-box-like  3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLW 42
                + P Ei   I  +L++  L+rl + Cr W++v+   p+L+
  CCE27459.1 26 HMPREIKALIIFHLDLDVLSRLGQSCRAWYQVT--LPELY 63
                8899**9999999*******************9..56898 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.3    0.0018       5.3       4      25 ..     122     144 ..     122     152 .. 0.84
   2 ?    2.1   0.0       0.1     3e+02       2      19 ..     271     285 ..     270     302 .. 0.72
   3 ?    2.5   0.0     0.079   2.4e+02      19      29 ..     366     377 ..     357     380 .. 0.84
   4 ?   -2.3   0.0       2.4   7.3e+03       9      24 ..     399     415 ..     394     420 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0018
                 BHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGA 25 
                 T+LH+A+ + ++r +k LL  GA
  CCE27459.1 122 TALHYAIIRRNLRLAKKLLdMGA 144
                 9******8899999999994476 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.1
                 SBBHHHHHHHHTTHHHHH CS
         Ank   2 GnTPLHlAatngkkriik 19 
                 G T LH A ++g    i+
  CCE27459.1 271 GETLLHTALRCG---AIQ 285
                 99*****98887...333 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.079
                 HHHH.TTTSTTC CS
         Ank  19 klLL.hGAnlna 29 
                  ++L hGA+ln 
  CCE27459.1 366 NFFLdHGADLNE 377
                 579*99****96 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.4
                 HHHHTTHHHHHHHH.TT CS
         Ank   9 AatngkkriiklLL.hG 24 
                 Aa+++ ++ +++L+ +G
  CCE27459.1 399 AAMEALEELLHDLIdKG 415
                 45777788999999667 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4504.34
//
Query:       CCE27460.1  [L=395]
Description: related to Pseudomonas L-fucose dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-57  192.8   0.0      1e-56  192.3   0.0    1.1  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.3   0.0   5.8e-61     1e-56       1     278 [.      16     316 ..      16     326 .. 0.90

  Alignments for each domain:
  == domain 1  score: 192.3 bits;  conditional E-value: 5.8e-61
                   .EEEE-SSS-ST.TS-HHHH..HHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH..-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHH CS
  Aldo_ket_red   1 elglGtwqlgskeeiskeea..lellrraleaGinffDtAevYgkgqseellGealkk..srkkreeviiatKvdlrdaeiksglskenireslees 93 
                   +l+lGt++++ + ++++++    +++rrale+Gi  fDt+++Y  g+se llG al+    +  r+ +++ tK  +r+a++++++s+++ir s+ +s
    CCE27460.1  16 PLILGTATFNHQ-YNDPSQLpyTDIVRRALEHGIMGFDTSPYY--GPSEVLLGDALQTltPPPTRDGYFLITKA-GRIASNEFDYSPAWIRYSVCRS 108
                   69********98.555555411566******************..**************99*************.********************** PP

                   HHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHH...TTSEEEEEEES--HHHHHHH......HHTTT--EEEEE-B-BTT.-HHHHTTHHHHHH CS
  Aldo_ket_red  94 lkrLgtdyvDllllHrpdpslpsieevldaleelvk...eGkiraiGvSnfsveqleka......kkkkkvkivavqveynll.releeegllelck 180
                   l+rLgt y+Dl++ H++++ +p  +evl+a++el++   eG+ir++G+S+++ve l ++      ++ +++++v+++ +++++ ++l  +  l+ + 
    CCE27460.1 109 LERLGTPYLDLVYTHDVEFVSP--AEVLEAVKELRRmrdEGLIRYVGISGYPVEVLVSLaemileETGEPLDAVMSYSNFCIQnSQLGRADFLQRLG 203
                   **********************..666666666655555********************************************55555555555555 PP

                   HTT-EEE.EBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTS...................... CS
  Aldo_ket_red 181 kkgvpli.aysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsq...................... 254
                   + g+ ++ ++s l++Gl+t++  +++++ + +p++         + ++ + +l e+a++ g+ l+++alr+al++                      
    CCE27460.1 204 NAGIECVlNASMLSMGLITTRGADNGPMSSWHPAPP--------QLREVCHDLAEIARKSGERLEEVALRWALENwgrigaplgstaiprslragap 292
                   57****************************999996........688***************************99999999999999999999998 PP

                   TT-SEEEE--SSHHHHHHHHGGGG CS
  Aldo_ket_red 255 pavgivipgasnieqlednldale 278
                   p+ g++++g+sn+++le++ + ++
    CCE27460.1 293 PRIGVSVMGVSNVDELEETWALWK 316
                   8*****************998884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2825.58
//
Query:       CCE27461.1  [L=552]
Description: probable monosaccharide transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.8e-117  392.4  26.1   3.2e-117  392.2  26.1    1.0  1  Sugar_tr  Sugar (and other) transporter
      2e-27   96.1  55.6    3.1e-23   82.3  27.5    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.2  26.1  3.6e-121  3.2e-117       1     451 [.      38     518 ..      38     519 .. 0.94

  Alignments for each domain:
  == domain 1  score: 392.2 bits;  conditional E-value: 3.6e-121
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 ++ +a++gg+ fgYd+g+i+++l +  f+        +++++ s++ ++livsi++ G ++G+l+ag l+d++GRk++ + ++v++  g v+q+++  +
  CCE27461.1  38 LCAFASFGGIFFGYDSGYINGVLGSKIFIEAVEG---VGQTAVSESNTSLIVSILSCGTFFGALIAGDLADFIGRKWTVILGCVIYALGCVVQMITSPD 133
                 5899******************999995544443...33344456799*********************************************999999 PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                  ++  +++gR+++G+gvG++s++v +y+sEi+p k+Rgalv  yq++it+Gi++a+i+ +++++++n+  +ri++++q+ +al+l i+llflP+SPry+
  CCE27461.1 134 HALGPIVAGRIIAGLGVGFESAVVILYMSEICPRKVRGALVAGYQFCITIGIMLASIVVYATKDIDNTGAYRIPIAIQFPWALILGIGLLFLPDSPRYF 232
                 *************************************************************************************************** PP

                 HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH...................HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee..............kaswkellssktvrqrlligvvlqifqqltGinaimyysptifen 283
                 v+kgk ++a   l+++rg+++++++++ e++++ a++e e              + + ++++s k++++r+++g  lq++qq tG+n+i+yys+ ++++
  CCE27461.1 233 VKKGKIQQAIDALSRVRGQPPNSEYVQSEIAEIVANEEYEralipsttwfgswaNCFKGSVFSAKSNLRRTILGTSLQMMQQWTGVNFIFYYSTPFLKS 331
                 ************************************887799****99977777777778888888********************************* PP

                 SS-THH.HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS................CHHHHHHHHHHHHHHHTT CS
    Sugar_tr 284 lglsks.llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks.............kaasivaivfialfialfalg 366
                 +g     +l+++i+  vn+ +t  ++++v+rfGRRt+l++Ga+gm++c ++++  +v+  +++++              +a ++ i+fia+fi+ fa +
  CCE27461.1 332 TGAISNtFLISLIFTLVNVCSTPLSFWTVERFGRRTILIVGAFGMLVCQFLVAiiGVTVGFNHTHpdpadptnsladnISAVNAQIAFIAIFIFWFAST 430
                 **75555**********************************************96566666666699******999988999999************** PP

                 TTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH...T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGG CS
    Sugar_tr 367 wgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig...ggyvflvfaglavlfiifvfffvpetkgrtleeieel 451
                 wgp  w+++ E+fp+ +Rs +  +++a+nwl+n +i++++p++++      +  vf++++gl+  ++i+ +f +petkg++le+++++
  CCE27461.1 431 WGPGAWIVIGEIFPLPIRSRGVGLSTASNWLWNTIIAVITPYMVGEKRgnlKSSVFFIWGGLCTCAFIYAYFLIPETKGLSLEQVDKM 518
                 *******************************************98777666699******************************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3  27.5   3.4e-27   3.1e-23       9     298 ..      41     402 ..      35     431 .. 0.76
   2 !   28.0  20.1   1.1e-10   9.6e-07       3     187 ..     305     519 ..     303     541 .. 0.73

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 3.4e-27
       MFS_1   9 alarsilgpalpl.alaedlg...............ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa....sslwl 87 
                 +++++ +++ + + +++  lg               +s+s  +l++++ + g+++++l++G l+d +Gr+++++lg +++alg ++  ++    + l +
  CCE27461.1  41 FASFGGIFFGYDSgYINGVLGskifieavegvgqtaVSESNTSLIVSILSCGTFFGALIAGDLADFIGRKWTVILGCVIYALG-CVVQMItspdHALGP 138
                 555555555555555555555555555555777777***********************************************.444443357666669 PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrk 182
                 ++++r+++Glg g+  ++++ +++++ p++ rg  ++ ++ ++ +G++l+ ++  +  +       +r +  i  + +l++++ +ll+lp++p+   +k
  CCE27461.1 139 IVAGRIIAGLGVGFESAVVILYMSEICPRKVRGALVAGYQFCITIGIMLASIVVYATKDI-DntgaYRIPIAIQFPWALILGI-GLLFLPDSPRYFVKK 235
                 **************************************************9998876533.2355899999999999999999.459999999999999 PP

       MFS_1 183 spkeee................................kgtgpaplvp......awkallkdpvl.....w..illialllf...ffgfsglltllply 233
                  ++++                                 +      l+p       w   +k  v+     +   +l ++l +   ++g+++++++++ +
  CCE27461.1 236 GKIQQAidalsrvrgqppnseyvqseiaeivaneeyerA------LIPsttwfgSWANCFKGSVFsaksnLrrTILGTSLQMmqqWTGVNFIFYYSTPF 328
                 99999999**99999999999988888888886555553......333444444555555555554433313335555555533344444488888888 PP

       MFS_1 234 lqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt............s 298
                 l+++  +s    + l++ ++ lv++++ +l+ + + r+grr++l+++ +++l++ +++a+++vt             
  CCE27461.1 329 LKSTGAIS---NTFLISLIFTLVNVCSTPLSFWTVERFGRRTILIVGAFGMLVCQFLVAIIGVTvgfnhthpdpadP 402
                 88888888...4444589999******************************************96665555555550 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 1.1e-10
       MFS_1   3 laaflsalarsi...lgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllf..a....ss...... 84 
                 l++ l +++ ++   +++ ++  +l+++ g + s   l+  +++l+ + ++++  + ++rfGrr +l++g+++++++ +l++++  +    ++      
  CCE27461.1 305 LGTSLQMMQQWTgvnFIFYYSTpFLKST-G-AISNTFLISLIFTLVNVCSTPLSFWTVERFGRRTILIVGAFGMLVCqFLVAIIgvTvgfnHThpdpad 401
                 5555666666654332222222244333.2.22223345666888999999999999********************5555554431344422456666 PP

       MFS_1  85 ...........lw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg..Wravfyilaivsllafvlf 168
                            +   +++  ++  ++a++  p++ ++i ++fp + r+r++gl +a++ l   + +++ ++++ +  g   ++vf+i ++++  af+ +
  CCE27461.1 402 ptnsladnisaVNaQIAFIAIFIFWFASTWGPGAWIVIGEIFPLPIRSRGVGLSTASNWLWNTIIAVITPYMVgEKRGnlKSSVFFIWGGLCTCAFIYA 500
                 667777777776657999999999999**********************************************77777999****************98 PP

       MFS_1 169 llllpeepperkrkspkee 187
                 ++l+pe++  +  + +k  
  CCE27461.1 501 YFLIPETKGLSLEQVDKMM 519
                 8888777666555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3904.55
//
Query:       CCE27462.1  [L=195]
Description: uncharacterized protein CPUR_00936 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1427.04
//
Query:       CCE27463.1  [L=220]
Description: uncharacterized protein CPUR_00937 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-08   33.6   0.0    5.8e-08   32.6   0.0    1.5  1  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
    2.9e-07   30.1   0.0    4.6e-07   29.5   0.0    1.4  1  HTH_psq      helix-turn-helix, Psq domain
     0.0049   16.5   0.0     0.0081   15.8   0.0    1.3  1  CENP-B_N     CENP-B N-terminal DNA-binding domain
     0.0049   16.6   0.3      0.011   15.4   0.3    1.6  1  HTH_23       Homeodomain-like domain
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.025   14.7   0.0    1.5  1  HTH_3        Helix-turn-helix
      0.018   14.8   0.3      0.023   14.5   0.3    1.2  1  RecC_C       RecC C-terminal domain
       0.11   12.7   0.2        0.2   11.8   0.2    1.4  1  HTH_28       Helix-turn-helix domain
       0.32   11.9   1.2        1.1   10.2   0.9    2.2  2  zf-C2H2_4    C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   2.6e-11   5.8e-08       3      64 ..      59     117 ..      57     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 2.6e-11
                  HHHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHT.S--X CS
  HTH_Tnp_Tc5   3 elEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRh.glkr 64 
                  ++E+ L +Wi++l ++g+p+t+    e A ++++      +++  ++k W++ F++R+ ++k 
   CCE27463.1  59 QQERLLSHWISHLVALGVPPTQGHFEEFASHILVA----HGDQQPLGKHWVQGFLRRNtEVKL 117
                  79******************************633....468999************976665 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   2.1e-10   4.6e-07       2      43 ..       6      46 ..       5      48 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.1e-10
     HTH_psq  2 pealaaAleavvnGkmSirkAArkYgiPrsTLwrrkrgkysl 43
                + +l+ A++ v+ G +S+r AA++  iPr TL+ r++g++s+
  CCE27463.1  6 ERDLQQAVREVQQG-TSQRSAAKRWHIPRATLQDRLNGGISH 46
                5689**********.******************999999876 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.6e-06    0.0081      14      43 ..      11      40 ..       5      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.6e-06
                HHHHHHHCTT-HHHHHHHHT--CCHHHHHH CS
    CENP-B_N 14 evIqrleegeSkaelarrfnvpestlsdil 43
                ++++++ +g S ++ a+r ++p+ tl d l
  CCE27463.1 11 QAVREVQQGTSQRSAAKRWHIPRATLQDRL 40
                5789**********************9865 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   5.1e-06     0.011       3      36 ..       5      38 ..       3      45 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.1e-06
      HTH_23  3 sereRlrillllaeGlsvreIAreLgvsrrTvyr 36
                +er+ +++++ +++G s+r +A++++++r T++ 
  CCE27463.1  5 TERDLQQAVREVQQGTSQRSAAKRWHIPRATLQD 38
                5667789************************984 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.1e-05     0.025       3      33 ..      12      44 ..      11      53 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
                HHHH.HTTHHHHHHHHHHTSSHHHHHHHHTT.S CS
       HTH_3  3 elRk.qlglsqeeLAeklGvsrstisriEnG.e 33
                + R+ q+g sq+ +A++  ++r+t+++  nG +
  CCE27463.1 12 AVREvQQGTSQRSAAKRWHIPRATLQDRLNGgI 44
                67999*************************954 PP

>> RecC_C  RecC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3     1e-05     0.023      93     160 ..       7      90 ..       3     152 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1e-05
      RecC_C  93 ealaealrallgeepleslevdldlggtgLtgtldglr...ergllrwrpsklkakdllraWlehLalca................l 160
                 ++l +a+r+  ++++++s + + +++  +L+++l+g     e+   r r+s+ +  +ll++W+ hL+  a                +
  CCE27463.1   7 RDLQQAVREVQQGTSQRSAAKRWHIPRATLQDRLNGGIshaEAHECRQRFSR-QQERLLSHWISHLV--AlgvpptqghfeefashI 90 
                 5678888888888888888888999988877777665544433333436666.6678**********..756555444444444440 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   8.9e-05       0.2       4      33 ..      11      40 ..      10      42 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.9e-05
      HTH_28  4 eiikllaaGhsvreaArelgisrrtvyrWi 33
                ++++++++G s+r aA++ +i r t+++ +
  CCE27463.1 11 QAVREVQQGTSQRSAAKRWHIPRATLQDRL 40
                79************************9876 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.9   0.00051       1.1       5      23 ..      51      70 ..      50      71 .. 0.89
   2 ?   -3.4   0.0         8   1.8e+04      14      20 ..      98     104 ..      96     105 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00051
   zf-C2H2_4  5 iCgksFsskka.LlrHlkth 23
                 C+++Fs++++ Ll+H+ +h
  CCE27463.1 51 ECRQRFSRQQErLLSHWISH 70
                6*****988889******99 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8
   zf-C2H2_4  14 kaLlrHl 20 
                 + L +H+
  CCE27463.1  98 QPLGKHW 104
                 6689998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1699.49
//
Query:       CCE27464.1  [L=1114]
Description: K, P-type ATPase (mediates high-affinity potassium or sodium uptake) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-40  136.5   0.5    6.7e-40  136.5   0.5    2.7  2  E1-E2_ATPase     E1-E2 ATPase
    6.8e-34  117.2   9.7    6.8e-34  117.2   9.7    2.9  3  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    4.5e-21   76.1   0.0    5.9e-09   36.5   0.1    3.2  2  Hydrolase        haloacid dehalogenase-like hydrolase
    2.4e-15   56.4   0.0    4.9e-15   55.4   0.0    1.5  1  Cation_ATPase    Cation transport ATPase (P-type)
    5.6e-10   38.8   0.0    1.4e-09   37.5   0.0    1.7  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    0.00036   20.4   1.3     0.0005   19.9   0.5    1.6  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.013   16.0   1.6      0.013   16.0   1.6    2.7  3  DUF2231          Predicted membrane protein (DUF2231)
      0.057   13.8   0.0        0.5   10.7   0.0    2.4  2  HAD              haloacid dehalogenase-like hydrolase
       0.16   11.7   0.0       0.16   11.7   0.0    3.2  4  DUF2157          Predicted membrane protein (DUF2157)
        0.4   10.6   4.8        4.9    7.1   0.0    3.7  3  DUF2678          Protein of unknown function (DUF2678)
        1.5    8.1   3.6         21    4.4   0.1    2.6  2  TMEM43           Transmembrane protein 43


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.23   3.8e+02     108     157 ..     139     193 ..     124     209 .. 0.58
   2 !  136.5   0.5   4.1e-43   6.7e-40       2     181 .]     218     416 ..     217     416 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.23
                   --HHHHHHHHHHHH...HHHHHHHHHHHHHHS-STTTSSTT..HHHHHHHHHHHH CS
  E1-E2_ATPase 108 ktplqkkldklgkv...lvpvvlliallvflialllgksla..eallralallva 157
                    +++ + l+ +g +   +  + l+ ++lvf+ +  lg++      l  a++llv+
    CCE27464.1 139 PPKTNRALTIFGYFfkgFGGILLISSILVFISWKPLGEPNPavANLALAIVLLVV 193
                   5555666666555511145555555555555554444433245444445555554 PP

  == domain 2  score: 136.5 bits;  conditional E-value: 4.1e-43
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S..EEE-TTTS---S-EE-..........G-TTEE-TT-EEEE-EEEEEEE CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa..evdesaLTGEslpvek..........ekgdmvfsGtvvvsgeakavVt 86 
                   +lp++++vird ++ + +a+elvpGD+vl+kag++ paD r +e s   ++d s+LTGEs+p+            e+++   +Gt  + g+a+++V+
    CCE27464.1 218 MLPEHCQVIRDSQVADLAAEELVPGDVVLVKAGNKLPADLRFIEVSPdiKFDRSVLTGESRPIAGtvdctdnnylETHNIGLQGTHCIIGSATGIVV 314
                   789*****************************************99999***************99******9999********************* PP

                   E-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.......HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHH CS
  E1-E2_ATPase  87 atgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.......eallralallvaaiPcaLplavplalalgar 176
                   atg  t +g+ia+l++e+k + t l+k++  ++ ++ +++l+++++v++++  + ++         + ++  ++++va+iP++Lp+a++  l++ a+
    CCE27464.1 315 ATGDRTVFGRIATLTNEPKTQMTTLEKEVLHFVLFICAIMLTMIIIVIVVWAAWLRKDHpdwinvpTLIVDCVSIAVAFIPEGLPIAITAGLTITAN 411
                   ****************************************99999999999987777667789**888888***********************999 PP

                   HHHHT CS
  E1-E2_ATPase 177 rlakk 181
                    + k+
    CCE27464.1 412 LMRKN 416
                   99875 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.9       1.4   2.3e+03      89     101 ..     184     196 ..     143     214 .. 0.49
   2 ?    1.5   1.2      0.13   2.1e+02     127     162 ..     343     379 ..     321     398 .. 0.55
   3 !  117.2   9.7   4.2e-37   6.8e-34       1     181 [.     897    1099 ..     897    1100 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.4
  Cation_ATPase_C  89 yaqtmaFitlvls 101
                       a +++++++ ++
       CCE27464.1 184 LALAIVLLVVFFI 196
                      2222222222222 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.13
  Cation_ATPase_C 127 llllaillsl.llqvlivyvpglnavfgtaplsleew 162
                      +l +++++++ +l+++i+ + + +a+++   +++ ++
       CCE27464.1 343 VLHFVLFICAiMLTMIIIVIVVWAAWLRKDHPDWINV 379
                      4444444444144444444445666666666666666 PP

  == domain 3  score: 117.2 bits;  conditional E-value: 4.2e-37
  Cation_ATPase_C    1 plplsaiqiLwinLvtDllpalaLaleppekdimkrpPr.kkkepliskkmlrri.liqgllqalvtllvffltll.........lfgisek 81  
                       p++ls+ ++++i  +tD  +a++L++e+pe+d++ r+Pr  kk+ l+++ +++++ +i+g++ +l+++++ f++l+         +      
       CCE27464.1  897 PQILSSFLMIIICCFTDCAAATVLSYEQPEADVLLRRPRnIKKDRLVNWQLMFHAyAIIGVTETLASFAMSFWYLQrngipfsdlW------ 982 
                       789************************************99***********************************4444444441...... PP

  Cation_ATPase_C   82 enkls................snyaqtmaFitlvlsqifnalnlrsrreslfkfsglf....snkllllaillslllqvlivyvpglnavfg 153 
                           s                 n a++++F+ lv++q+fn++++r+rr s+++   lf     n++l+ ail++l ++++ +y+p +++++g
       CCE27464.1  983 ---FSfgnipasidpdyytqkLNEASSIYFVNLVVMQWFNLMATRTRRLSILQHPPLFnkatANWYLFPAILFALCMAIIWLYIPAIQTALG 1071
                       ...224444444455566666999*****************************8888899999***************************** PP

  Cation_ATPase_C  154 taplsleewlialllalvvllvdelvKl 181 
                       ta +++e w++ + ++l+++l+del++ 
       CCE27464.1 1072 TAAVPVEYWFLPFTFGLFIILIDELRRA 1099
                       *************************985 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   3.6e-12   5.9e-09       3     170 ..     434     720 ..     432     737 .. 0.63
   2 !   33.9   0.0   2.3e-11   3.8e-08     166     210 .]     785     828 ..     765     828 .. 0.84

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 3.6e-12
                 EEEEESBTTTBCHHHHHHHHHHHH.............................CHHHHHHHHHHHHCHHHHHHHHHHHHH......HHHHHHHHHETTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsa.............................alalaaaletgsehpigkalvaaakar......sgaltgfatfigr 66 
                  ++ Dk+GTLt+g++ v d+                                 +la   al  g+e   ++a v   k          a+ +f ++   
  CCE27464.1 434 MICSDKTGTLTQGKMAVSDCSIGSnnlsveelrksmasddnsskdaesvrvfgQLASLSALCNGAEMDAAQADVPIEKRNifgdatDTAVLRFSEILAS 532
                 5899***************44444234433334555555555555444444443333333333322222222222222223222222233333331111 PP

                 E..........................HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH.................................... CS
                 x..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................... RF
   Hydrolase  67 g..........................ayaigkpewltaldippdlgaaigsaqsqgrtvall.................................... 103
                 g                                                                                                  
  CCE27464.1 533 GnvnyfrscwkkvfelafnsknkfmirC----------------------------------Faisrhealdrtltpqdatdfkdndllltikgapdvl 597
                 1333333333444443333333333332..................................0334444444555555555555666667777777777 PP

                 .....................................................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHT CS
                 .....................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 .....................................................................qaralavftiadplkvkpeaaeavasLkaa 133
                                                                                         +++ ++i dp  ++pe+ e+v +L+ a
  CCE27464.1 598 iercshfltpsgevaeltqeakatfehiknmyssqgkrclllarkmlkaaqipgenpdyeklaieeaktGITLVGFVAIIDP--LRPEIPEVVSTLRGA 694
                 799999999999999999999999999999999999999999***************999999997765449**********..*************** PP

                 TEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 134 gievvlltgdnpetaeraanqlGddyfdaviasdiet 170
                 gi+  ++tgd+  ta ++a+ +G           i+t
  CCE27464.1 695 GIRFSMVTGDFALTALSIARDAG-----------IVT 720
                 ***********************...........333 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 2.3e-11
                 HHCES.STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 166 sdiet.vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 +++ + +a   pe+k++++re+q k + vam GDgvnDa+ l+aA+
  CCE27464.1 785 YEE-VvFARTTPEQKLRIVREYQ-KNSVVAMTGDGVNDAPSLKAAD 828
                 334.35****************6.6679*****************8 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0     3e-18   4.9e-15       1      90 [.     493     603 ..     493     604 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 3e-18
  Cation_ATPase   1 ilcNsaaf...sensekdevkllGnktEsALlvlaekl.gldteelreetkkvqeipFnssrKrmsvvlkle.................pekkvrl 75 
                    +lcN a++   + + + ++++++G++t++A l++ e l + +++ +r+ +kkv+e+ Fns++K+m+  + ++                 +++ ++l
     CCE27464.1 493 ALCNGAEMdaaQADVPIEKRNIFGDATDTAVLRFSEILaSGNVNYFRSCWKKVFELAFNSKNKFMIRCFAISrhealdrtltpqdatdfKDNDLLL 588
                    5899999999999999********************99999***************************99999*********************** PP

  Cation_ATPase  76 yvKGApeiilkrCth 90 
                    ++KGAp+++++rC+h
     CCE27464.1 589 TIKGAPDVLIERCSH 603
                    **************9 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   8.5e-13   1.4e-09       1      68 [.     100     167 ..     100     168 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 8.5e-13
  Cation_ATPase_N   1 ehalsleevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalv 68 
                      +h+   +ev  +L t+++ GL++ +a++rl++yG+N+ +++k   ++ ++   f+ +  ilL+ + lv
       CCE27464.1 100 WHTIASHEVTSRLVTSSTIGLSEPQAKRRLQEYGRNAPSPPKTNRALTIFGYFFKGFGGILLISSILV 167
                      899999**********************************************9999999999887766 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       5.7   9.3e+03     146     184 ..     602     641 ..     543     647 .. 0.70
   2 !   19.9   0.5   3.1e-07    0.0005     204     245 ..     809     850 ..     799     859 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 5.7
                  E.EES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEET CS
  Hydrolase_3 146 l.ilkdkekldelekelksklnklltitssskgyleimpk 184
                    +l+ + ++ el +e k+ +++  +++ss+++ + ++++
   CCE27464.1 602 ShFLTPSGEVAELTQEAKATFEHIKNMYSSQGKRCLLLAR 641
                  4566667777788888888887766777777666555555 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 3.1e-07
                  GGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE-- CS
  Hydrolase_3 204 eeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtks 245
                  + v+  GDg ND + L+aa++g+ mg++s+ + +aAd+v  +
   CCE27464.1 809 SVVAMTGDGVNDAPSLKAADVGISMGSGSDIAMEAADMVLLD 850
                  345566********************************9865 PP

>> DUF2231  Predicted membrane protein (DUF2231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       4.8   7.8e+03      72      91 ..     179     198 ..     155     201 .. 0.55
   2 ?   16.0   1.6   7.7e-06     0.013      20      89 ..     320     394 ..     301     398 .. 0.78
   3 ?   -2.6   0.0       4.6   7.6e+03      43      60 ..     952     969 ..     927     976 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.8
     DUF2231  72 vsplylalslvvvvlllvqg 91 
                   ++ lal++v++v+ ++q+
  CCE27464.1 179 PAVANLALAIVLLVVFFIQA 198
                 34455666666666666654 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 7.7e-06
     DUF2231  20 alaGlvelllaepsi..rakktallHa...vggvlllalivaltvWrfvlrlreeeqvsplylalslvvvvlllv 89 
                  ++G + +l++ep++  ++ +   lH+   + +++l+++i+++ vW  +lr++++  +++  l+++ v +++ ++
  CCE27464.1 320 TVFGRIATLTNEPKTqmTTLEKEVLHFvlfICAIMLTMIIIVIVVWAAWLRKDHPDWINVPTLIVDCVSIAVAFI 394
                 589********9888665566778887222569999999************************999998887665 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.6
     DUF2231  43 HavggvlllalivaltvW 60 
                  a++gv+ ++  +a++ W
  CCE27464.1 952 YAIIGVTETLASFAMSFW 969
                 367888888888888888 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00031       0.5       6     137 ..     570     729 ..     569     749 .. 0.66
   2 ?   -0.3   0.0      0.76   1.2e+03     153     188 .]     797     825 ..     790     825 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00031
         HAD   6 DgTLldgdsle..................lllrfllrrgaprlwralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpk. 84 
                 D TL+++d  +                  +   ++l  +++ +  + ++k+   +++ + +++ + +  l +++l++   +  + + e++  e++++  
  CCE27464.1 570 DRTLTPQDATDfkdndllltikgapdvliERCSHFLTPSGEVAELTQEAKATFEHIKNMYSSQGKRCLLLARKMLKAAQiPGENPDYEKLAIEEAKTGi 668
                 667777755555666666666666664442222233333333344444444444477777777888888888888888888888888888855555555 PP

         HAD  85 .......l...ldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevdd..r 137
                        +   l+p++ e+++  r aG+r+ +v+g +   +  +++  g    + t+l+vd    
  CCE27464.1 669 tlvgfvaIidpLRPEIPEVVSTLRGAGIRFSMVTGDFALTALSIARDAG----IVTSLHVDSvaQ 729
                 77777663244567*******999*************************....888888776552 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.76
         HAD 153 gkvaalrewlaaegegidleevvay.GDspsDlpllr 188
                 +k++ +re  +      +  +vva  GD+++D p l+
  CCE27464.1 797 QKLRIVRE--Y------QKNSVVAMtGDGVNDAPSLK 825
                 55555666..2......222377778******99885 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0001      0.16      10      89 ..     121     210 ..     115     249 .. 0.77
   2 ?    4.6   0.3     0.015        25      63     110 ..     345     393 ..     341     395 .. 0.83
   3 ?   -3.0   0.1       3.5   5.7e+03      69     103 ..     905     957 ..     895     976 .. 0.49
   4 ?   -3.5   0.8       4.9     8e+03      56      78 ..    1042    1063 ..    1037    1075 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
     DUF2157  10 teeqaqallaryeaeeresarrrsf....leallvlGalllglGlilfvAanW..qglsrlvkfllllvllllslllg.avlwrdr...r 89 
                 +e qa++ l++y+++ + + +++++    + ++ + G +ll  ++++f+++    +  + ++ ++l++vll+++++ + + + +d    r
  CCE27464.1 121 SEPQAKRRLQEYGRNAPSPPKTNRAltifGYFFKGFGGILLISSILVFISWKPlgEPNPAVANLALAIVLLVVFFIQAaFTMFQDWstsR 210
                 67788888888888877766555557888888889999999999999998653446678899**************99788877664441 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.015
     DUF2157  63 rlvkfllllvllllslllg.avlwrdrrvpprlgeallllaalllgaai 110
                 ++v f+++++l+++ ++++ + +w ++++p+++    l++ ++ + +a+
  CCE27464.1 345 HFVLFICAIMLTMIIIVIVvWAAWLRKDHPDWINVPTLIVDCVSIAVAF 393
                 5778888888888888888899999999999999999999998887766 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.5
     DUF2157  69 lllvllllslllgavlwrdr..................rvpprlgeallllaa 103
                 +++++++   +++ vl  ++                   + +++ +a +++++
  CCE27464.1 905 MIIICCFTDCAAATVLSYEQpeadvllrrprnikkdrlVNWQLMFHAYAIIGV 957
                 44444433333333333333466666655555444433333333444444444 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 4.9
     DUF2157   56 anWqglsrlvkfllllvllllsl 78  
                  anW  ++ ++ f+l++++++l +
  CCE27464.1 1042 ANWYLFP-AILFALCMAIIWLYI 1063
                  5666665.555666666666554 PP

>> DUF2678  Protein of unknown function (DUF2678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.003       4.9      66     115 ..     156     205 ..     137     208 .. 0.80
   2 ?    1.8   0.3      0.13   2.2e+02      59      82 ..     343     366 ..     317     393 .. 0.65
   3 ?    0.5   0.1      0.34   5.6e+02      46      81 ..     888     923 ..     877     940 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.003
     DUF2678  66 vcillisssvivlifwyrqgdlepkfrnliyyilasivllclcanlyfhd 115
                 +  +l  ss++v+i w   g+ +p   nl   i+  +v++   a   f+d
  CCE27464.1 156 FGGILLISSILVFISWKPLGEPNPAVANLALAIVLLVVFFIQAAFTMFQD 205
                 4457778899*********************9999999998888777776 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.13
     DUF2678  59 plniffavcillisssvivlifwy 82 
                  l   + +c ++ ++ +iv++ w 
  CCE27464.1 343 VLHFVLFICAIMLTMIIIVIVVWA 366
                 444455566666666666666653 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.34
     DUF2678  46 vvssfvfpslppkplniffavcillisssvivlifw 81 
                 v++s++f  ++  +  +++++c +  ++++ vl + 
  CCE27464.1 888 VMTSVIFGLPQILSSFLMIIICCFTDCAAATVLSYE 923
                 667788877666666677788888889998888764 PP

>> TMEM43  Transmembrane protein 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.013        21     186     243 ..     143     203 ..     117     210 .. 0.76
   2 ?    3.3   0.9     0.028        46     219     248 ..     341     370 ..     306     372 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.013
      TMEM43 186 twllRllGfllmflglllllsplsvlvslipll...gelvglglalvalllslslsllvia 243
                 +++l ++G++   +g +ll+s + v++s+ pl      +++l+la+v l++ ++ + +++ 
  CCE27464.1 143 NRALTIFGYFFKGFGGILLISSILVFISWKPLGepnPAVANLALAIVLLVVFFIQAAFTMF 203
                 567778999998888888888889******9955555566666666666666666666555 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.028
      TMEM43 219 gelvglglalvalllslslsllvialawll 248
                 +e++ ++l+++a++l++++ ++v+  awl+
  CCE27464.1 341 KEVLHFVLFICAIMLTMIIIVIVVWAAWLR 370
                 6888999*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.40
# Mc/sec: 8280.63
//
Query:       CCE27465.1  [L=544]
Description: related to triacylglycerol lipase V precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-95  320.6   0.0    3.5e-95  319.8   0.0    1.3  1  COesterase     Carboxylesterase family
    0.00024   20.8   0.0    0.00038   20.2   0.0    1.3  1  Esterase       Putative esterase
    0.00061   19.7   0.5     0.0045   16.9   0.4    2.1  1  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.8   0.0   5.9e-99   3.5e-95       3     469 ..      31     483 ..      29     496 .. 0.88

  Alignments for each domain:
  == domain 1  score: 319.8 bits;  conditional E-value: 5.9e-99
                 SEEEETTEEEEEEEEEESTCS.EEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHH.........BES---EEE CS
  COesterase   3 pvvetslGkvrGkrvklksek.evdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleaw.........vsEDCLyLn 91 
                 ++ ++  G + G++    +++ +v  +lG+P+++pP   +RFk+P+ ++pwt ++dA++++paC+q+ +  e+  + + +w          sEDCL Ln
  CCE27465.1  31 TTAKIDSGIIVGTSAVEPDSQaTVIKYLGVPFGAPP---ERFKPPRRPDPWTSPYDASNYKPACIQKFDYPESMRNLTMQWfnsppspagESEDCLNLN 126
                 5678899*****9877666666*************9...9****************************9999988888888****************** PP

                 EEEESSSSSTTSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HHHHH-B-.SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEE CS
  COesterase  92 vytPkekkeakkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGvlGFlst.gdeeapGNvGllDqvlALrWVkenIasFGGdperv 187
                 v++P++ k+++ k PV++w++Gg+f +g++s   ydg+++aa+++vivVt nYR +v+GF    + +  + N+G lDq+lAL+WV++nIa+ GGdp +v
  CCE27465.1 127 VFVPAS-KSSSPK-PVMFWLFGGAFSFGTGSLpaYDGTSFAANQDVIVVTSNYRTNVFGFPGSpELSRSEQNLGWLDQRLALDWVQRNIAALGGDPGKV 223
                 ****86.456666.*****************999**************************99956699******************************* PP

                 EEEEETHHHHHHHHHHHSGGGTTSBSEEEEES--TTSTTTSBSHHHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGGSSSSSSTTC-SSS-B CS
  COesterase 188 tlfGesAGaasvsllllsplsrglfkraIlqSGsalspwaiqkkarkrakklakkvgckassskelveclrsksaeelldaqekaleasssklvsfaPv 286
                 t++GesAGa sv++l++ p     f+ aI+qSG a  ++  +++a+ + +kl k ++c     ++ ++cl   +a++l d  e        ++++f Pv
  CCE27465.1 224 TIVGESAGAGSVDALVTAPPQPVPFRAAIMQSGQASISVENNSSAV-SWQKLTKLANC---AGSSALKCLGALPADQLRDLVER-------QSLPFFPV 311
                 *********************************9988877777555.56899******...444568************99977.......89****** PP

                 --SSS.SSS-HH.HHHHCGC......CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSTTTSSTCHHHH CS
  COesterase 287 vdgdf.lpekPe.ellkseg......kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeytdeadrddaeks 377
                  dg + + +kP  + l+s++       vp++iG+n++egl f++ +             +s++ l+d l ++   ++ + + ++  y   + +++++  
  CCE27465.1 312 HDGGVtFADKPRvDRLRSSStgssiaRVPVMIGTNAEEGLTFVYGKN------------DSRKFLQDSLPNA---NALTINLALGLYP--KGTRQTQDG 393
                 **96648899987788886689999******************9433............4466667777777...4455566666666..677888888 PP

                 HHHHHHHHHHHHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSGCSS-HHHHHHHHHHHHHHHHHHHH CS
  COesterase 378 rkallelltdvlfkapvlrtaklhasrgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllekeeftkedeklsrkmmtywtnFakt 469
                   +l  + t++++++p++ +a++ ++   +++ Y+f+ +  +++  ++ g+ h++e++++fg++  e    t+ +  lsr+m t w+nF+k 
  CCE27465.1 394 FHQLGLIDTEITMQCPARVLARDNKKVDIQTWRYYFEASFPNTEIFDHSGAWHSSEIRLIFGTYPKEGA--TALQVDLSRRMQTAWANFIKD 483
                 8999**********************************997777779****************999776..566****************95 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   6.4e-08   0.00038       9     246 ..     124     435 ..     118     439 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 6.4e-08
                 EEEEEE.CC.GGTTTEEEEEEE--TTHHCCHHHHHCHHC.CCCHCCT.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHCHHHHTHH.HHH CS
    Esterase   9 kvqvyLPedyspgrkypvvylldGltgwdqnfrakelle.slaregeiaeviivvvprggessfysdwdlgarfyenategpgaeayetfltqeL.lpl 105
                 +++v+ P + +++ + pv+++l G   ++  +    +++ ++ +    ++vi+v++ +  ++     + ++       +e + +e+    l q+L l++
  CCE27465.1 124 NLNVFVPAS-KSSSPKPVMFWLFG-GAFSFGTGSLPAYDgTSFAA--NQDVIVVTSNYRTNV-----FGFP-----GSPELSRSEQNLGWLDQRLaLDW 208
                 789999999.999999***99999.66655555555554123333..36999******9999.....5555.....6788889999999999**967** PP

                 HHHHCSEECCC...EEEEEETHHH..HHHHHHHHCSTTTCCEEEEES--S-CC.............................................. CS
    Esterase 106 ldanfrtapdg...ravaGqSmGG..lgALilalkhpdrFgsvssfSpivnps.............................................. 153
                 ++ n           +++G S G+  + AL++a   p  F  ++++S+ ++ s                                              
  CCE27465.1 209 VQRNIAALGGDpgkVTIVGESAGAgsVDALVTAPPQPVPFRAAIMQSGQASISvennssavswqkltklancagssalkclgalpadqlrdlverqslp 307
                 ****9999887888*******9862356*******************************9999999999999999999999999999999999999999 PP

                 ................................HCHHHC....TTCCHHHCC-CCCCHCHHCHTTSEEEEEEEECTTBCCCHTSCHHHHHHHHHHHCCHH CS
    Esterase 154 ................................namWgq....eekeawqendpvllakelsaslkalriyldvGtseddlgeqlsveilevlarnrelk 216
                                                 ++m+g+         + +nd+    + +  +  al+i l  G  ++ +++q++  + +     +e++
  CCE27465.1 308 ffpvhdggvtfadkprvdrlrssstgssiarvPVMIGTnaeeGLTFVYGKNDSRKFLQDSLPNANALTINLALGLYPK-GTRQTQDGFHQLGLIDTEIT 405
                 999999999999999999999999999999999999997643222235688899999999999999999999999997.66677777777777888888 PP

                 HHCCCCCCTT-SCCCC--SSHHH.HHHHHHH CS
    Esterase 217 eqlaargvegedheydGghswey.WraqLia 246
                  q  ar +  +++++d +++w+y + a+++ 
  CCE27465.1 406 MQCPARVLARDNKKVD-IQTWRYyFEASFPN 435
                 8899999999999999.99999878887765 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   7.6e-07    0.0045       2      87 ..     142     237 ..     141     245 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.6e-07
                    EEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---.......TTTS-...TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHH CS
  Abhydrolase_3   2 vyfHGGGfvlgsldthdalcrelakelgavvvsvdYrl.......APehp...fPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaa 87 
                    +++ GG+f +g+ + +    +++a++ +++vv  +Yr        +Pe           d   al w++ + ++lg dp +++++G+SaG+  + a
     CCE27465.1 142 FWLFGGAFSFGTGSLPAYDGTSFAANQDVIVVTSNYRTnvfgfpgSPELSrseQNLGWLDQRLALDWVQRNIAALGGDPGKVTIVGESAGAGSVDA 237
                    6777888888888888888888888888888888888744444445664311133445688889*******99*****************975555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 4542.49
//
Query:       CCE27466.1  [L=448]
Description: uncharacterized protein CPUR_00940 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-64  216.4   0.0    9.4e-64  215.2   0.0    1.6  1  N2227            N2227-like protein
     0.0012   19.4   0.1     0.0092   16.6   0.0    2.3  2  Methyltransf_11  Methyltransferase domain
      0.002   18.5   0.2     0.0044   17.4   0.2    1.5  1  Muted            Organelle biogenesis, Muted-like protein
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.044   13.6   0.0    1.9  2  Methyltransf_23  Methyltransferase domain
      0.017   15.9   0.1      0.087   13.6   0.0    2.3  2  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> N2227  N2227-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.2   0.0   2.6e-67   9.4e-64      15     270 ..     192     447 ..     183     448 .] 0.96

  Alignments for each domain:
  == domain 1  score: 215.2 bits;  conditional E-value: 2.6e-67
                 HHHHHHHHHHHH-STTHHHHHHHHHHHHHHHHHHS-T......T-EEEEET-TT-HHHHHHHHT.T-EEEEEE--HHHHHHHHHHHHS---TT-EEE-T CS
       N2227  15 vrstlrqivRdwsaegkeERealykpiieelkelvpseskerekvkilvPGaGlGrlavelatk.gyqvegnEfsyfmllasefiLnavkeenqitiyp 112
                 v ++l++ivRdw +eg++ER+++++ + ++l++l+p+++ ++e+vkil PGaGlGrl +e++++ g++v  nE+s++   + +f L++ ++  + + +p
  CCE27466.1 192 VAQALKHIVRDWTEEGSRERDKTFACLRRSLEQLFPERTVDNERVKILLPGAGLGRLGHEISRLgGFEVTINEWSMYTNAVYRF-LETQSTPMSQSFHP 289
                 7899************************************************************99*************99999.688899999***** PP

                 TTT--SS-SSGGGGG--EEE-SS------TTS--EEEEES-HHHHH--SSHTT-EEEEEEES-TTSSS-HHHHHHHHHHHEEEEEEEEEEE----TTTT CS
       N2227 113 fvhsfsnqlsrddqlrkvkipDveplselkrkknlsmaagdflevykeeeaaesydvvvtcfFiDtaeNvleYletiekvlkpgglwiNlGPLlYhfed 211
                 f+   s++ ++++  r++++pDv++ +      ++ m+ gdf++v   +    +ydvv+t fFiDta+N+l Y++ti+ vlk+gglwiNlGPLlY++++
  CCE27466.1 290 FADGWSHHATEENMHRALHFPDVSINE-----RDVLMVEGDFTTVFRAH--SGHYDVVLTYFFIDTARNLLSYFDTIKDVLKKGGLWINLGPLLYGTSP 381
                 **********************99877.....7889**********999..99********************************************** PP

                 TTSEEEEE----HHHHHHHHHHS-EEEEEEEEEE..............EE-SS-STT--S---EEEEEEEEEE CS
       N2227 212 ltvadevsielsleeilalakkvgfkvlkeekei..............esgYltnkesmlqlkYklvffvlrk 270
                 l       ++lsle+il++a+k+gf+ l+   +               e+ Y+ ++++++++ Y+++f+v+rk
  CCE27466.1 382 L-------VQLSLEDILTVAEKMGFEFLETDAQCgeptfdskstvrsiEASYTFDHKALTKNAYNAQFWVARK 447
                 *.......*********************99988889999999999999*********************997 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.68   2.4e+03      49      74 ..     174     199 ..     134     224 .. 0.46
   2 !   16.6   0.0   2.6e-06    0.0092      44      93 ..     318     368 ..     294     370 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.68
                      TEECCCTSS-TT-EEEEEEES-CCC- CS
  Methyltransf_11  49 vadaeklpfednsfDlvvssevlhhv 74 
                      +  +++   e ++ D + + ++l h+
       CCE27466.1 174 QKHIRDREAEGAQPDGISVAQALKHI 199
                      33333333344455666666666666 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 2.6e-06
                      EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11  44 kvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                       v +v++d++++    ++ +D+v+ ++++++  ++ ++++ i+ vLk+gGl
       CCE27466.1 318 DVLMVEGDFTTVfRAHSGHYDVVLTYFFIDTARNLLSYFDTIKDVLKKGGL 368
                      366799****97689999********************************8 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   1.2e-06    0.0044      27     109 ..     104     183 ..      99     187 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
       Muted  27 keFEekRgdrevelLenikklvnelkeqllpkclesmkenLselnkkleaalekverllqkeleeekrkseqlqekeeerkae 109
                 k +E  R + +v +L+++   v++ +++ll+ ++   +++ +++++kl   ++ ++++ q +l+  + ++++lq++ + r+ae
  CCE27466.1 104 KFYE--RQRADVDRLRQLYVYVSKAQKKLLEDTVSY-SSKFTKVEQKLASNQHLCDDIVQASLQYYNLDTTELQKHIRDREAE 183
                 5555..77899*****************99998887.79*************************************9999887 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.48   1.7e+03      73     100 ..     145     172 ..      63     206 .. 0.62
   2 ?   13.6   0.0   1.2e-05     0.044      10     114 ..     219     368 ..     208     379 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.48
  Methyltransf_23  73 eqeaaepqgkfdlIvlrevlehvpdppe 100
                      eq+ a +q  +d Iv+  + +   d +e
       CCE27466.1 145 EQKLASNQHLCDDIVQASLQYYNLDTTE 172
                      4555555555555544444333333333 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.2e-05
  Methyltransf_23  10 sdklerllpk...lraggrvLdiGcGtGillevl.rengfsvtgvDlspeaveiae...........................kakkaqkdqfd 72 
                      ++ le+l+p+   ++++ ++L  G+G G+l  ++ r  gf+vt  + s   ++ ++                           +          
       CCE27466.1 219 RRSLEQLFPErtvDNERVKILLPGAGLGRLGHEIsRLGGFEVTINEWSMYTNAVYRfletqstpmsqsfhpfadgwshhateeN---------- 302
                      566666665544455555777778888877777734447777777777665555556665554444444443333333332220.......... PP

  Methyltransf_23  73 eqeaae.............................pqgkfdlIvlrevlehvpdppellrqiatllkpgGy 114
                                                          +g++d++   +++ + +++ +++++i++ lk gG+
       CCE27466.1 303 -----MhralhfpdvsinerdvlmvegdfttvfraHSGHYDVVLTYFFIDTARNLLSYFDTIKDVLKKGGL 368
                      .....022222222222223333333333333444666*******************************97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.9   3.2e+03      49      82 ..     169     203 ..     141     223 .. 0.63
   2 ?   13.6   0.0   2.4e-05     0.087      47      98 ..     308     368 ..     242     369 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.9
  Methyltransf_12  49 nnvelealdlldldggssfDlvvasnvlhhl.kdi 82 
                      +  el++   + +++g++ D + ++++l h+ +d+
       CCE27466.1 169 DTTELQKHIRDREAEGAQPDGISVAQALKHIvRDW 203
                      33333333333344447888888888888887443 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.4e-05
  Methyltransf_12  47 nnnnvelealdlldldgg.........ssfDlvvasnvlhhlkdirevldnirklLkpgGr 98 
                      ++  v ++++d+l  +g          +++D+v+  +++   +++ +++d i+++Lk+gG 
       CCE27466.1 308 HFPDVSINERDVLMVEGDfttvfrahsGHYDVVLTYFFIDTARNLLSYFDTIKDVLKKGGL 368
                      4444555555555444446677777778*******************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3218.38
//
Query:       CCE27467.1  [L=343]
Description: uncharacterized protein CPUR_00941 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-66  222.5   0.1    8.8e-66  222.2   0.1    1.0  1  DUF1996   Domain of unknown function (DUF1996)


Domain annotation for each model (and alignments):
>> DUF1996  Domain of unknown function (DUF1996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.2   0.1   4.9e-70   8.8e-66       1     233 []      41     271 ..      41     271 .. 0.90

  Alignments for each domain:
  == domain 1  score: 222.2 bits;  conditional E-value: 4.9e-70
     DUF1996   1 DPivspgevsshvHtivGgsafnasltyeelrkskctscevkeDkSnYWvptLYfkkengsferveqkggllvYYllekkk..........ekkvtafp 89 
                 DP+v  g++sshvH+ivGg+af+ +l +e++r +k t+c+   D+S+YW p+LY+++++g+fe ve + g+  YY++++            +   +a p
  CCE27467.1  41 DPLVFDGQISSHVHAIVGGTAFDLHLPNEKARGGKATTCDKVLDRSSYWQPQLYHERKDGKFEIVELQ-GMAGYYMNRACDyapgrmncigQPIAKAPP 138
                 9*******************************************************9********966.9*******54435555555554444499** PP

     DUF1996  90 kgfrmiaGdptlr...ekslaqkaisftcleseekeeaeeetkelpkktkkkcasglraeilfpsCwdgknldspdhkshvaypskveesegkCpeshp 185
                 kg+rm++G+p lr   +++ +q+ais++cl ++     + +t +lp    k+c+ ++rae +fpsCwdgknldsp hk+h+a+p  ++ ++g Cpeshp
  CCE27467.1 139 KGLRMVVGNPFLRtfnKTNPEQRAISHICLGEN-----AGDTPHLP---VKQCD-RMRAETFFPSCWDGKNLDSPTHKHHMAFPAIGDYNTGVCPESHP 228
                 *************66555556789******886.....36799***...567*8.*****************************999999********* PP

     DUF1996 186 vrlpqlfyeviwdtekfnkkedgksqpfvlsngdktGyglHaDFinGW 233
                 +++ ++f+e++++t +++     + +++v+++gd++GyglH+DFinGW
  CCE27467.1 229 IAIYSIFLEFFYNTGNIE-----NYNRLVWAMGDASGYGLHGDFINGW 271
                 ***************987.....3689********************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2527.49
//
Query:       CCE27468.1  [L=453]
Description: related to C4-dicarboxylate transport protein mae1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-84  281.7  39.7    9.1e-84  281.5  39.7    1.0  1  SLAC1     Voltage-dependent anion channel


Domain annotation for each model (and alignments):
>> SLAC1  Voltage-dependent anion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.5  39.7   5.1e-88   9.1e-84       1     324 []      96     433 ..      96     433 .. 0.94

  Alignments for each domain:
  == domain 1  score: 281.5 bits;  conditional E-value: 5.1e-88
       SLAC1   1 hftpawFaivMGtgilalllkalp.a.rglriislilfllalvlfllllvlyllrfilypeavrkelrhpveslflgtfpmglltilnglll..vl.pg 94 
                 hft+aw+++ M+tg+lall++ +p + +gl+ii+li+++l++++f+++++l+++rf +y +++ k+++hp e++fl+tf+++++ti++ +    ++ ++
  CCE27468.1  96 HFTWAWYTLPMSTGGLALLIRSQPhQfPGLNIIGLIVYILNIIIFATISCLMVARFSIYSGDMSKSIKHPREGFFLPTFFLSVATIITSTDRyaIPkHD 194
                 8*******************74676469***********************************************************777775455555 PP

       SLAC1  95 ewlatlalvllWigvllslltavvvvfllftekeekleeitpawllpvvgllvvallgallaesqnpslqllgilvvslllwglGlllalvlfvlylyr 193
                   l++++  ++W +v+++l++a+++++++f  ++  l++++p+w+lp++++++++++++++ae+q++  ++  i+v++l+++glG+++a+++++ ++ r
  CCE27468.1 195 VGLVWAVSGAFWAYVAVTLVLAIGQYSYVFAAHRFGLHTMMPTWILPIFPIMLSGTIASVIAETQPQASAVP-IIVAGLTCQGLGFAVAVLMYAHMVGR 292
                 6777777777*********************99778****************************99997887.************************** PP

       SLAC1 194 lithklppaelrptlfiplGplgqgalallllgkaapk...........aaevlkvlalllalflwglglfwllvavlsvlslpvrlkfslswWaftFP 281
                 l++ +lp++e+rp+lf+++Gp++++alal++++k +p+             +v++++al+ a+flw+l+l+w+ +a+++v++ p + +f+l+wWa++FP
  CCE27468.1 293 LMSAGLPNREHRPGLFMCVGPPAFTALALVGMAKGLPAnldtamdgrffDTTVVRTMALMSAIFLWSLSLWWFGIAAVAVIQSP-PEHFHLGWWAMVFP 390
                 ************************************8889**99999888888899**************************77.9************* PP

       SLAC1 282 lgalalatielgkaleseafkvlgtillvllvlvwllvlvgtl 324
                 ++++ lati +g++l+ +++ +++t+l+++l++++l+vl++++
  CCE27468.1 391 NTGFILATISIGRELGHDGVLWFATGLSICLLCTYLFVLFNHI 433
                 ***************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3456.55
//
Query:       CCE27469.1  [L=545]
Description: related to GABA permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-61  207.1  50.2    5.1e-61  206.8  50.2    1.0  1  AA_permease_2  Amino acid permease
    1.4e-31  109.6  46.8    1.9e-31  109.2  46.8    1.0  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.8  50.2   5.7e-65   5.1e-61       2     425 .]      42     484 ..      41     484 .. 0.86

  Alignments for each domain:
  == domain 1  score: 206.8 bits;  conditional E-value: 5.7e-65
  AA_permease_2   2 sllsafalvigsv.....igsgifvknlaasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkva....flsawfnwfay 88 
                    s+ s ++l++ ++     ++++ +++  +++g  +++lw+w+ v ++s++ ++ +aE+++++p+ gG+y +++ ++ +++a    f+ +w+++++ 
     CCE27469.1  42 SMMSILGLSFAIMavpygLSTTMYIT--LNNGQSVSVLWGWVLVSLISICIAASLAEMCAVFPTAGGVYYWSAMLSTPRWAapvsFVDGWLTLVGN 135
                    56666777777776665555778888..999***************************999**************9999988999*********** PP

  AA_permease_2  89 vpvlasilsvaasyllna...lgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdt 181
                    + v+ si+  +a+ +l+a   ++pd+ + +w+t+l+++a+++++al+n++g + +  i+ i+++++   +liil+ l + +  ++   + ++ +  
     CCE27469.1 136 WTVTLSINFGGAQLILSAitlFNPDYAPAPWQTVLCFWAVMVFCALVNAFGSRYLHLINQICIYWTSASVLIILVTLLVMAPERRSGEF-VFGHYD 230
                    ***************888444689*****************************************998777666655555555544432.344445 PP

  AA_permease_2 182 ffpngwpg...vllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvv 272
                      ++gwp+   +++gll  +++++G+ ++a + eev++  + vpkai+++++ +++ +l + i +l+v+pd      +   ++++l+f++v g+ +
     CCE27469.1 231 ASASGWPSawsFFVGLLSPAYVLTGYGMVAAMCEEVQNpeREVPKAIVLSVVAAGITGLIFIIPLLFVMPDIATLLKEA--QPIGLLFKTVTGSSA 324
                    6667999744569999*******************8877689*****************************77765554..7899******99977 PP

  AA_permease_2 273 aiivvilial.sllgaintavigssrvlealardgvlP..rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyll 364
                     ++  ++++l ++l+++++ ++++sr  +a+ardg++P  + +++vn k + p+ a++l+ +v ++l++++ + s++a+n  + v++++l  sy++
     CCE27469.1 325 GGFGLLFLILgIMLFSGIGGLTAASRCTYAFARDGAIPghHLWSRVNkKLNMPVWALVLSTVVDCLLGCIYFG-STSAFNSFTGVATICLGMSYCV 419
                    777777777726666********************************99*******************99866.69******************** PP

  AA_permease_2 365 liigalilrkkrphlkrpgk.....ilvaiigalfllfllvalffppkgpatqssliytiiltval 425
                    ++  +l+ r+ + ++  p+      ++++ii ++++ f+lv++++p   p+  ss++y+ ++++++
     CCE27469.1 420 PVMVLLVRRR-EAVKHSPYSlgkfgPIINIICVVWIMFALVIFCMPVTLPVDASSMNYASVVFAGF 484
                    *966666554.4554343333333378********************9***********9998875 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2  46.8   2.1e-35   1.9e-31      10     463 ..      55     493 ..      42     502 .. 0.84

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 2.1e-35
  AA_permease  10 viGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpel....GfviGln.ylfswitvlaleltaasiliq 102
                  +++ gl + ++++l+++  +++l +++l+ +++++++ sl+e+   +p +gg y++++    p++    +fv G++ ++ +w ++l + +++a+ +++
   CCE27469.1  55 AVPYGLSTTMYITLNNGQSVSVLWGWVLVSLISICIAASLAEMCAVFPTAGGVYYWSAMLSTPRWaapvSFVDGWLtLVGNWTVTLSINFGGAQLILS 152
                  4788999***************************************************99999762222577788866779*************9999 PP

  AA_permease 103 fwel.vtdl.pkawvtgavflvvlliinlvgvkvygeaefi..lalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeeg 196
                   + l ++d+ p  w t++ f++v++++ lv++ +++   +i  +++++  a +  i+v+  ++a ++++ +  f f ++++s ++ + +         
   CCE27469.1 153 AITLfNPDYaPAPWQTVLCFWAVMVFCALVNAFGSRYLHLInqICIYWTSASVLIILVTLLVMAPERRSGE--FVFGHYDAS-ASGWPS--------- 238
                  9988666642677888*************************888888888888888888777777777777..455555554.222222......... PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplina 294
                     +f++++   +  +tG+++va++ +Ev++Pe+ +Pkai   v+  +i  +++++ + +++p+ ++ l ++   +     +f + +g+s+ ++ + +
   CCE27469.1 239 -AWSFFVGLLSPAYVLTGYGMVAAMCEEVQNPEREVPKAIVLSVVAAGITGLIFIIPLLFVMPDIATLLKEAQPIG----LLFKTVTGSSAGGFGLLF 331
                  .458999999999999**************************************************9999955544....899999************ PP

  AA_permease 295 viltaalssansslysasRvlyslakdglaP...kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylr 389
                  +il+  l+s++++l++asR  y++a+dg++P    + ++ +k + P+ a++ls+++ +l+  + ++ +   ++fn +  ++++   + +++  + +l+
   CCE27469.1 332 LILGIMLFSGIGGLTAASRCTYAFARDGAIPghhLWSRVNKKLNMPVWALVLSTVVDCLLG-CIYFGST--SAFNSFTGVATICLGMSYCVPVMVLLV 426
                  *********************************77777777889***************99.7777777..*************99999998888885 PP

  AA_permease 390 fRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliil 463
                   R++  +    ++ +++ + + +   i+++ +++i++ ++ ++ ++t++ + +++++as+++a   ++ ++ +l
   CCE27469.1 427 RRRE--A----VKHSPY-SLGKFGPIINIICVVWIMFALVIFCMPVTLPVDASSMNYASVVFAGFAAIAVVWYL 493
                  5555..2....222333.44556666778888999999999999999999999999998888876655554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3569.40
//
Query:       CCE27470.1  [L=498]
Description: probable RRB1-involved in the regulation of ribosome biosynthesis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.4e-15   54.8   8.7    1.7e-06   28.6   0.1    4.5  4  WD40         WD domain, G-beta repeat
    5.1e-13   49.1   0.0    3.7e-12   46.3   0.0    2.4  2  CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CA
    1.8e-09   37.8   0.9    0.00097   19.4   0.1    3.2  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.084   11.8   2.1      0.072   12.0   0.5    1.6  2  PALB2_WD40   Partner and localizer of BRCA2 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.2   8.9e+02       4      35 ..     253     287 ..     229     288 .. 0.64
   2 !   28.6   0.1   3.8e-10   1.7e-06       5      38 .]     302     337 ..     299     337 .. 0.87
   3 !    6.8   1.6    0.0031        14      10      38 .]     354     382 ..     346     382 .. 0.78
   4 !   19.4   0.0   3.2e-07    0.0014       2      38 .]     400     438 ..     399     438 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.2
                 EEEEESS..SSEEEEE...EETTSSEEEEEETTSEEE CS
        WD40   4 lrtltGH..ssvtsla...fspdgawlasGsdDgtvr 35 
                 + t+++H   + ++l+     p g++l +G+ Dg ++
  CCE27470.1 253 ISTIRAHktEG-YALDwspIVPGGKLL-TGDNDGLIY 287
                 44444442211.344233444555665.798899886 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 3.8e-10
                 EEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 r + GH +sv  +++sp+ + ++ s+s Dgt+r+Wd
  CCE27470.1 302 RPFQGHtNSVEEIQWSPSEQSVFaSASSDGTIRVWD 337
                 6799**999************8525567*******9 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0031
                 SSSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40  10 Hssvtslafspdgawl.asGsdDgtvriWd 38 
                 H +v+ +++s+  + l asG+dDg   +Wd
  CCE27470.1 354 H-DVNVMSWSRQTSHLlASGDDDGVWAVWD 382
                 6.67778888888886268889******98 PP

  == domain 4  score: 19.4 bits;  conditional E-value: 3.2e-07
                 EEEEEEESS.SSEEEEEEETTSSEE..EEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawl..asGsdDgtvriWd 38 
                 q++ ++  H   +tsl ++p  + +  ++++ D+tv +Wd
  CCE27470.1 400 QPVASFNFHkEQITSLEWHPTDDSImaVAAG-DNTVTLWD 438
                 78999****555************7333678.*******9 PP

>> CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CAF1 complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   8.2e-16   3.7e-12       5      64 ..      92     155 ..      88     158 .. 0.89
   2 ?   -1.1   0.0      0.51   2.3e+03      24      38 ..     344     360 ..     340     373 .. 0.68

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 8.2e-16
                  HHHHHHHHHEEEEEEEE-SS--S-EEE...........-S-B---EEEEEEEE.----TT..SS-EEEEEEEEE CS
  CAF1C_H4-bd   5 ewkknapfLYdmlhshslewPsLsfdw...........lPdtvsslskqrllv.Gtqtsg..keqnylyvakvs 64 
                    + ++   Y+mlh+ s++wP+Lsfd+           +P t+       ++v Gtq+++   ++n+l v k s
   CCE27470.1  92 APDLST---YEMLHNLSTPWPCLSFDIvrdglgdnrkaYPATM-------YMVaGTQAENakASDNQLLVNKFS 155
                  578899...******************9999999999999999.......********776699****998876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.51
                  S--S-EEE-S-B--..- CS
  CAF1C_H4-bd  24 wPsLsfdwlPdtvs..s 38 
                   P L++++  ++v+  s
   CCE27470.1 344 TPALTVQVSRHDVNvmS 360
                  5999*999888764321 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   2.2e-07   0.00097      36      91 ..     306     363 ..     288     364 .. 0.80
   2 ?    2.7   0.1     0.034   1.5e+02      40      73 ..     355     389 ..     351     399 .. 0.79
   3 !   14.8   0.0   5.7e-06     0.026      35      67 ..     406     439 ..     391     443 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.2e-07
  ANAPC4_WD40  36 kedsevrsLaWkpdgk.lLavaysdgevrlldaesgkvvhsls..vksekavtclgWge 91 
                  ++ ++v++++W+p+++ ++a a sdg++r+ d+ s+    +l+  v+++  v+ ++W+ 
   CCE27470.1 306 GHTNSVEEIQWSPSEQsVFASASSDGTIRVWDVRSKSRTPALTvqVSRH-DVNVMSWSR 363
                  67899********885489*************99887666555005555.6******86 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.034
  ANAPC4_WD40  40 evrsLaWk.pdgklLavaysdgevrlldaesgkvv 73 
                   v+ ++W+ +  +lLa + +dg   + d  + k+ 
   CCE27470.1 355 DVNVMSWSrQTSHLLASGDDDGVWAVWDLRNWKTS 389
                  6888999625689*********9999998887765 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 5.7e-06
  ANAPC4_WD40  35 dkedsevrsLaWkp.dgklLavaysdgevrllda 67 
                  + ++++++sL+W+p d++++ava  d++v l d 
   CCE27470.1 406 NFHKEQITSLEWHPtDDSIMAVAAGDNTVTLWDL 439
                  56899********85689************9885 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   1.6e-05     0.072     296     346 ..     325     377 ..     317     382 .. 0.75
   2 ?   -2.5   0.0      0.42   1.9e+03      51      66 ..     423     438 ..     411     452 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
  PALB2_WD40 296 aavltsGaiavWdlll.ghctalllpesdesWslvrWsgtdsqlla.GqkdGs 346
                 a+  + G+i vWd+   ++  al +  s ++  ++ Ws ++s+lla G  dG 
  CCE27470.1 325 ASASSDGTIRVWDVRSkSRTPALTVQVSRHDVNVMSWSRQTSHLLAsGDDDGV 377
                 555677*******9761566677788888889999**********94566665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.42
  PALB2_WD40  51 elcivtacesavslWk 66 
                  +  v+a +++v+lW 
  CCE27470.1 423 SIMAVAAGDNTVTLWD 438
                 3445677777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3655.55
//
Query:       CCE27471.1  [L=125]
Description: probable thioredoxin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-20   71.0   0.0    9.3e-20   70.5   0.0    1.1  1  Thioredoxin    Thioredoxin
    8.6e-06   25.6   0.0    9.9e-06   25.4   0.0    1.1  1  Thioredoxin_9  Thioredoxin
    0.00093   18.6   0.1      0.001   18.5   0.1    1.1  1  OST3_OST6      OST3 / OST6 family, transporter family
     0.0017   18.8   0.0     0.0067   16.9   0.0    1.9  1  Thioredoxin_2  Thioredoxin-like domain
     0.0053   16.5   0.0     0.0069   16.1   0.0    1.2  1  Thioredoxin_5  Thioredoxin
  ------ inclusion threshold ------
      0.037   14.2   0.0      0.076   13.2   0.0    1.5  1  Thioredoxin_7  Thioredoxin-like


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   3.1e-23   9.3e-20       4     102 ..       6     105 ..       3     106 .. 0.89

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 3.1e-23
                  ESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT..TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE.EEEEEESS-HHHHHH CS
  Thioredoxin   4 vltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd..kvklakvdvdenedlakkyevegiPtlklfkngk.evkkyegarekekla 98 
                   ++k++F++ +++ +  v ++  A+wCg+Cka++P + k ++e+    ++ +ak d+d+ + la +++v+++Pt+++f+ng+ +  +++ga++ ++l+
   CCE27471.1   6 LTSKDEFDALIKS-NPFVAIQASASWCGPCKAISPLFVKHSDEHGIenTFAFAKFDTDDVPALAFELGVRSLPTFLFFENGDkSDISVTGANP-QALK 101
                  567899***9999.**************************99975445**********************************66677888888.8999 PP

                  HHHH CS
  Thioredoxin  99 aflk 102
                  + ++
   CCE27471.1 102 NSVE 105
                  8876 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.3e-09   9.9e-06      48     127 ..      26     106 ..       4     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 3.3e-09
                    E--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT.-SS--SSEEEEE-TT.--EEEEEESS-HHHHH..HH CS
  Thioredoxin_9  48 ltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqylt.ngaraiPtliildee.geelgvwgerPaevqelvde 127
                      + wCg + ++ P + k +++  +ie ++ + + +++ +       g r+ Pt+++++++  +++ v g  P+++++ v++
     CCE27471.1  26 ASASWCGPCKAISPLFVKHSDEH-GIENTFAFAKFDTDDVPALAFeLGVRSLPTFLFFENGdKSDISVTGANPQALKNSVEK 106
                    4679*******************.**********9999998887779**************9**************998765 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   3.5e-07     0.001      43     124 ..      28      95 ..      12     122 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.5e-07
   OST3_OST6  43 qfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpkeskkkdtydfsrggf 124
                  + C +C+ + p f + ++ +  +     ++  Fak d d+ + +  +lg++s+P +l+f+  ++ +         +s +g+
  CCE27471.1  28 ASWCGPCKAISPLFVKHSDEHGIE-----NTFAFAKFDTDDVPALAFELGVRSLPTFLFFENGDKSD---------ISVTGA 95 
                 456889999998887776665555.....89*****************************9943322.........222222 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.2e-06    0.0067       9     102 ..      23      98 ..      15     104 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.2e-06
  Thioredoxin_2   9 lvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPt.ivfldgkeivarlpGyvpa 102
                    ++  ++++C+ Ck++   + + +d + +      ++   ++++++++++ ++           la ++gvr++Pt ++f +g++    ++G+ p+
     CCE27471.1  23 AIQASASWCGPCKAISPLFVKHSDEHGI------EN--TFAFAKFDTDDVPA-----------LAFELGVRSLPTfLFFENGDKSDISVTGANPQ 98 
                    4444589999999999977777444333......33..47888888888776...........************55677777666688888765 PP

>> Thioredoxin_5  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.3e-06    0.0069     136     183 ..      52     100 ..      43     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.3e-06
  Thioredoxin_5 136 sklakkafqcDl..klakemgvtevPtlvffneneeeeglkveglksyev 183
                     ++a  +f++D    la e+gv+++Pt+ ff+ n + ++++v+g +++++
     CCE27471.1  52 NTFAFAKFDTDDvpALAFELGVRSLPTFLFFE-NGDKSDISVTGANPQAL 100
                    56677778887534799**************9.99999******998765 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.5e-05     0.076      24      81 ..      26      82 ..      17      84 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.5e-05
                   E--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---SSEEEEE CS
  Thioredoxin_7 24 fgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqgvPvvafl 81
                    +aswc++C+a+   f ++ +    + + f++ ++d +   a  +el  + +P+++f+
     CCE27471.1 26 ASASWCGPCKAISPLFVKHSDEHG-IENTFAFAKFDTDDVPALAFELGVRSLPTFLFF 82
                   4799***************99999.99*****99999999884444444779988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 999.52
//
Query:       CCE27472.1  [L=773]
Description: uncharacterized protein CPUR_00946 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-24   85.4   8.1    4.4e-06   27.3   0.0    7.2  8  WD40         WD domain, G-beta repeat
    6.8e-06   26.3   0.0       0.76   10.1   0.0    4.1  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0012   17.9   0.4       0.21   10.5   0.0    3.4  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
  ------ inclusion threshold ------
      0.059   13.4   0.2         29    4.8   0.0    4.3  5  BBS2_Mid     Ciliary BBSome complex subunit 2, middle region
      0.064   13.2   0.2       0.78    9.8   0.0    2.9  3  PD40         WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   4.2e-05      0.15      12      37 ..     171     196 ..     160     197 .. 0.85
   2 !   27.3   0.0   1.2e-09   4.4e-06       2      37 ..     232     267 ..     231     268 .. 0.87
   3 !   18.3   0.1     9e-07    0.0032       2      38 .]     273     310 ..     272     310 .. 0.88
   4 !    8.3   0.0    0.0012       4.4      11      28 ..     324     341 ..     316     351 .. 0.79
   5 ?    2.0   0.0      0.13   4.6e+02      23      38 .]     394     408 ..     363     408 .. 0.72
   6 !   14.2   0.0   1.7e-05      0.06      15      38 .]     429     452 ..     417     452 .. 0.87
   7 ?   -2.7   0.0       3.8   1.4e+04       7      31 ..     469     495 ..     464     497 .. 0.52
   8 ?   -2.6   0.0       3.4   1.2e+04      20      37 ..     549     566 ..     547     567 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.2e-05
                 SEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriW 37 
                  +++  fs dg++la +++D+tvr++
  CCE27472.1 171 AIWAAEFSLDGRYLAVAGKDHTVRVF 196
                 489999*********999******97 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 1.2e-09
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +++r+++GH + v +l++s+++ +l+ +s+D+tvr+W
  CCE27472.1 232 KPTREFEGHtGEVLALSWSKNNFLLS-SSMDKTVRLW 267
                 6899*****777*********99885.677******* PP

  == domain 3  score: 18.3 bits;  conditional E-value: 9e-07
                 EEEEEEESSSS.EEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40   2 qclrtltGHss.vtslafspdgawl.asGsdDgtvriWd 38 
                 +cl t++ Hs+ vts+af+p  + + ++Gs D  +r+W+
  CCE27472.1 273 ECLCTFK-HSDlVTSIAFHPTDDRFfLAGSLDAQLRLWS 310
                 6999998.97889****99999996259**********5 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0012
                 SSEEEEEEETTSSEEEEE CS
        WD40  11 ssvtslafspdgawlasG 28 
                  ++t++afspdg+  ++G
  CCE27472.1 324 AFITAVAFSPDGKTAICG 341
                 34***********97766 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.13
                 SEEEEEETTSEEEEEE CS
        WD40  23 awlasGsdDgtvriWd 38 
                 + l+s s D  vri++
  CCE27472.1 394 KVLIS-SNDSRVRIYN 408
                 33775.55******98 PP

  == domain 6  score: 14.2 bits;  conditional E-value: 1.7e-05
                 EEEEETTSSEEEEEETTSEEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriWd 38 
                 + +fs+d+++++sGs+D+  +iW+
  CCE27472.1 429 HARFSDDKTYVISGSEDRRAYIWN 452
                 456********************8 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 3.8
                 EESSSS..EE..EEEEETTSSEEEEEETT CS
        WD40   7 ltGHss..vt..slafspdgawlasGsdD 31 
                 +++H +  vt  ++a  +  ++l++++ D
  CCE27472.1 469 FDAH-PevVTtaCMAPIKTRQLLSASG-D 495
                 5667.4445423444444455565555.6 PP

  == domain 8  score: -2.6 bits;  conditional E-value: 3.4
                 TTSSEEEEEETTSEEEEE CS
        WD40  20 pdgawlasGsdDgtvriW 37 
                  dg+ +++ ++ gt++++
  CCE27472.1 549 GDGHIIITTDRTGTIKVF 566
                 577777777778888875 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00067       2.4      37      70 ..     168     201 ..     158     217 .. 0.81
   2 !   10.1   0.0   0.00021      0.76      35      89 ..     238     289 ..     224     292 .. 0.80
   3 ?    3.8   0.0     0.019        70      38      88 ..     281     330 ..     278     334 .. 0.82
   4 ?    1.1   0.0      0.13   4.8e+02      35      79 ..     320     364 ..     306     383 .. 0.76
   5 ?   -3.7   0.0       4.2   1.5e+04      55      69 ..     397     411 ..     389     417 .. 0.73
   6 ?   -3.2   0.0       3.1   1.1e+04      48      66 ..     549     567 ..     548     581 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00067
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  ++  + + +++ dg+ Lava +d +vr++++ s+
   CCE27472.1 168 SGDAIWAAEFSLDGRYLAVAGKDHTVRVFSVIST 201
                  56677788999******************99765 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00021
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +++ +ev +L+W++++ +L  +  d +vrl +++  +++ +++ ++   vt++ +
   CCE27472.1 238 EGHTGEVLALSWSKNN-FLLSSSMDKTVRLWHMSRPECLCTFKHSDL--VTSIAF 289
                  67889*******9885.666777899*************99987766..888776 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.019
  ANAPC4_WD40  38 dsevrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  +  v+s+a++p d++++  +  d ++rl ++ ++ v  s ++++   +t + 
   CCE27472.1 281 SDLVTSIAFHPtDDRFFLAGSLDAQLRLWSIPDKAVAFSATTNAF--ITAVA 330
                  5679*****9856799999999***********999999888765..66665 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.13
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  ++++  ++++a++pdgk    +   g + +++    k+ ++++v 
   CCE27472.1 320 ATTNAFITAVAFSPDGKTAICGLLTGLCLFYNTDGLKLESQIHVR 364
                  4667789**********9999999998888887777666666655 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 4.2
  ANAPC4_WD40  55 vaysdgevrlldaes 69 
                  ++ +d++vr++++ +
   CCE27472.1 397 ISSNDSRVRIYNMRT 411
                  566788999988765 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 3.1
  ANAPC4_WD40  48 pdgklLavaysdgevrlld 66 
                   dg+++      g+++++ 
   CCE27472.1 549 GDGHIIITTDRTGTIKVFR 567
                  5788888888888877764 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   5.9e-05      0.21     186     222 ..     168     204 ..     148     291 .. 0.70
   2 ?    1.4   0.0     0.034   1.2e+02     182     215 ..     318     351 ..     304     364 .. 0.80
   3 ?    1.6   0.0      0.03   1.1e+02     139     176 ..     388     427 ..     372     468 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.9e-05
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqvyledee 222
                 +   i  a fs dG  la+a +d +v+ f v  + ee
  CCE27472.1 168 SGDAIWAAEFSLDGRYLAVAGKDHTVRVFSVISTPEE 204
                 3347999**********************99876443 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.034
    Ge1_WD40 182 lkieehsliveaafspdGtalatasedGevkffq 215
                 +  + ++ i+  afspdG +       G+  f+ 
  CCE27472.1 318 FSATTNAFITAVAFSPDGKTAICGLLTGLCLFYN 351
                 4444556899********9988888888888885 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.03
    Ge1_WD40 139 dddeaskllvltrgdkaeiwsvd..miaskygsgelsvee 176
                 d++e  k+l+ ++ +++ i+++   m++ k++  e s+++
  CCE27472.1 388 DGKEDVKVLISSNDSRVRIYNMRtrMLEVKFRGLENSSSQ 427
                 4455556666666666666665411344444433333333 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.16   5.8e+02       5      29 ..     175     198 ..     171     212 .. 0.76
   2 ?    0.2   0.0      0.21   7.4e+02      13      46 ..     253     288 ..     245     329 .. 0.61
   3 ?    4.8   0.0    0.0081        29       8      36 ..     388     416 ..     382     424 .. 0.81
   4 ?   -2.7   0.0       1.7   6.1e+03      10      34 ..     434     458 ..     426     465 .. 0.71
   5 ?    0.2   0.0      0.21   7.6e+02       9      34 ..     547     573 ..     541     586 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.16
    BBS2_Mid   5 advdgdgeneLvvgsddfeirvfke 29 
                 a++  d  ++L v+ +d ++rvf+ 
  CCE27472.1 175 AEFSLD-GRYLAVAGKDHTVRVFSV 198
                 566666.46999***********85 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.21
    BBS2_Mid  13 neLvvgsddfeirvfkee..elvaeitetekvvsla 46 
                 n L+ +s d ++r+++    e + +++ ++ v+s+a
  CCE27472.1 253 NFLLSSSMDKTVRLWHMSrpECLCTFKHSDLVTSIA 288
                 556677777777776544336777777777776665 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0081
    BBS2_Mid   8 dgdgeneLvvgsddfeirvfkeeelvaei 36 
                 dg+++ +++++s+d ++r+++  + + e+
  CCE27472.1 388 DGKEDVKVLISSNDSRVRIYNMRTRMLEV 416
                 7788899*************988766665 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.7
    BBS2_Mid  10 dgeneLvvgsddfeirvfkeeelva 34 
                 d++++++ gs+d +  +++  +l +
  CCE27472.1 434 DDKTYVISGSEDRRAYIWNVASLEN 458
                 4588999999998877766655555 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.21
    BBS2_Mid   9 gdgeneLvvgsdd.feirvfkeeelva 34 
                 ++g+ ++++ +d   +i+vf+++ + +
  CCE27472.1 547 KHGDGHIIITTDRtGTIKVFRQDCAYM 573
                 566777777776425788888875544 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.97   3.5e+03      16      24 ..     177     185 ..     177     187 .. 0.89
   2 ?    9.8   0.0   0.00022      0.78       7      23 ..     322     338 ..     320     339 .. 0.84
   3 ?   -1.5   0.0      0.75   2.7e+03      20      37 ..     551     566 ..     550     567 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.97
                 E-TTSSEEE CS
        PD40  16 fSPDGkrla 24 
                 fS DG++la
  CCE27472.1 177 FSLDGRYLA 185
                 899****98 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00022
                 SSS.EEEEEE-TTSSEE CS
        PD40   7 tpgnegaPsfSPDGkrl 23 
                 t++ ++a +fSPDGk+ 
  CCE27472.1 322 TNAFITAVAFSPDGKTA 338
                 6677999********97 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.75
                 SSEEEEEEECT.TCEEEE CS
        PD40  20 GkrlaFsSdRgsGkpdIy 37 
                 G  ++++ dR+ G+  ++
  CCE27472.1 551 G-HIIITTDRT-GTIKVF 566
                 5.699******.987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5445.26
//
Query:       CCE27473.1  [L=409]
Description: related to DOM34-functions in protein translation to promote G1 progression and differentiation [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-41  139.1   0.0    1.3e-40  138.4   0.0    1.4  1  eRF1_1    eRF1 domain 1
    1.2e-17   64.5   0.1    2.1e-17   63.7   0.1    1.4  1  eRF1_2    eRF1 domain 2
    2.1e-15   57.2   0.0    3.9e-15   56.3   0.0    1.5  1  eRF1_3    eRF1 domain 3


Domain annotation for each model (and alignments):
>> eRF1_1  eRF1 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4   0.0   2.1e-44   1.3e-40       1     128 [.       1     131 [.       1     132 [. 0.96

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 2.1e-44
                 HEEEEE.CTBTTSCCEEEEEE-SCHHHHHHHHHCHTTHEEEEEEEECHHH........--CEEEEEEEEEEEEEEECTTSSEEEEEEEEEEGGGG--TT CS
      eRF1_1   1 mkllkr.dlekdgsgsvtLipeddedlwhlynliapgdsvrastvrkvqr.esstgsreservklkLtikvekvdfdkdagvlrisGkvieenehvklg 97 
                 mkl++r  l+  +++ v+L+ped+ed+wh+ynli pgd v a++ rkv + +s+tg  + erv++ Ltikv+++ fd+  + lr+sG v++en+hv++g
  CCE27473.1   1 MKLINRqYLKDVEEEQVSLLPEDPEDMWHAYNLIIPGDLVHAHALRKVVTvNSGTGAAVAERVHTDLTIKVKSTFFDAVISSLRVSGIVASENDHVPKG 99 
                 9*****666778999*********************************9978*********************************************** PP

                 SEEEEEE-TTSEEEEEE.CEESHHHHHHHHHH CS
      eRF1_1  98 afhtldlelkrpftiik.eewdsfalerLkea 128
                 ++htld+e++r fti k ++wds+   +L +a
  CCE27473.1 100 SHHTLDIEVNRSFTIVKlDGWDSVSKATLAQA 131
                 *****************777*********998 PP

>> eRF1_2  eRF1 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.1   3.5e-21   2.1e-17       2     133 .]     140     270 ..     139     270 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 3.5e-21
                 EEEEEEETTEEEEEEEESSCEEEEEEEE------BSTTBSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTTESEEEEEESSTHHHHHHHHHHHHH CS
      eRF1_2   2 vglivldegeAtigllkgsrtevlkkievsvPkKhkrGgqsarrfeRlreekleeflkkvaeaankafllvdkdklkgiilagpgfvkeefldkdllda 100
                 ++++v++eg+A+i+l+++ rt ++ ++e+ vPkK+    ++a+      +  l++f++k  +++ +a   vd++  + ++la+pgfv+ +f d++    
  CCE27473.1 140 MAAVVMQEGLANICLVTQFRTVLKTRVESVVPKKRD---TAAD-----QDAGLKKFFDKTLSSLLRA---VDFSGSRPLLLASPGFVAGDFKDYIAKLG 227
                 799********************************7...4555.....3677888888888888888...9***********************99888 PP

                 HHHT........CCEEEEE-S-TSCHHHHHHHHC..CHHHHCC CS
      eRF1_2 101 elkk........kviklvdvsyggesglnevlek..aaevlkd 133
                 + k+        k ++++++ +g+ ++lnevl+   +++++kd
  CCE27473.1 228 RDKSdkvlnavaKQATVIHAHSGHIYSLNEVLKSpeVMSKMKD 270
                 7777789999999999*****************9999998886 PP

>> eRF1_3  eRF1 domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   6.5e-19   3.9e-15       2     113 .]     274     376 ..     273     376 .. 0.94

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 6.5e-19
                 HHHHHHHHHHHHHHHCTCSSEEESHHHHHHHHHTT-EE....EEEEEHCHHTSSSH.HHHHS-HHH-HHHHHHHHHHHHHHHHHTT-EEEEE-TTSHHH CS
      eRF1_3   2 iqekklleefleelakdtgkavYGveevlkalemgAve....tLLvseelersrdt.lkekvketgeelelvelieelvenveesgakveiisseseeG 95 
                  +e++++++fl+ l+ d+g+a+YG + v++a+e gAv      LL+ ++l+rs+d  +++k             +  lv++v+  g++  i+ss++e+G
  CCE27473.1 274 TKEAQAMTKFLDLLKLDDGRAWYGSTAVERAIEDGAVGpgggVLLINNSLFRSQDLeTRKK-------------YVALVDKVHLDGGETRILSSDHESG 359
                 689**********************************644448**********99988887.............9************************ PP

                 HHHHHHTTTEEEEESS-- CS
      eRF1_3  96 eqlvkafgGiaaiLRykv 113
                 + l k +g iaa+L y++
  CCE27473.1 360 QTL-KMMGDIAAMLNYPM 376
                 ***.************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2972.62
//
Query:       CCE27474.1  [L=295]
Description: related to 2,5-diketo-D-gluconic acid reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-36  125.1   0.0    6.9e-34  117.4   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.0   3.8e-38   6.9e-34       9     290 ..      22     277 ..      16     279 .. 0.88

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 3.8e-38
                   S-ST..TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEE CS
  Aldo_ket_red   9 lgsk.eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDl 104
                   lg +  +i+ke++ ++   al  G++++D+A +Y++         +l++ +++r ev+ +tKv     +    ls +n +  +++ l+  ++dy+Dl
    CCE27474.1  22 LGFGvYQIPKETVTNTCVEALHLGYRHIDSASAYRNQGPSAAS--ILAS-GVPRSEVFFTTKV----PMSGKPLSYDNTIYLVNTALQDTKLDYLDL 111
                   444555899*************************333333332..5777.9************....6677789*********************** PP

                   EEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH.........HHTTT--.....EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEE CS
  Aldo_ket_red 105 lllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka.........kkkkkvk.....ivavqveynllreleeegllelckkkgvpli 187
                   +l+H p   + +++ +++al+elv++Gk+r+iGvSn+ v +l+++         +  ++ +     i++ q e +++  l    +++ c++ ++++ 
    CCE27474.1 112 VLIHSPYGGTQNRLGAWKALVELVEAGKVRSIGVSNYGVHHLDELeqyiqtlekE--RGGPgkggvISVGQWELHPW--LTRPDIVQWCRERDIAIQ 204
                   ***************************************************9652..33333466699999999999..****************** PP

                   EBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HH CS
  Aldo_ket_red 188 aysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklsee 284
                   aysp+++G +                              + +++ + a+++g++ aq+ lr+ l  +++ ++++++ +++++ +n++ ++++l+e 
    CCE27474.1 205 AYSPIARGERW----------------------------GQSPQVTAAAEKYGKTEAQILLRWSL--QRGYVPLVKSVTPSRIAENAAIFDFELTEA 271
                   ******99766............................345678999*****************..9***************************** PP

                   HHHHHH CS
  Aldo_ket_red 285 evaeld 290
                   eva ++
    CCE27474.1 272 EVADIA 277
                   **9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2221.15
//
Query:       CCE27475.1  [L=480]
Description: uncharacterized protein CPUR_00949 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        1.5    7.9  13.0      0.053   12.6   5.7    2.1  2  Roughex         Drosophila roughex protein


Domain annotation for each model (and alignments):
>> Roughex  Drosophila roughex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.7     0.047   8.5e+02      89     110 ..      54      75 ..       4     110 .. 0.58
   2 ?   12.6   5.7   2.9e-06     0.053     232     323 ..     337     420 ..     319     443 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.047
     Roughex  89 eekererattlhlraesddeev 110
                 e++er+ra    +r e + e+ 
  CCE27475.1  54 EQRERDRAEQERIRKEFEKEKA 75 
                 3333333333333333333322 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.9e-06
     Roughex 232 evpqarslsvrrilfadgadedgdedtdgsveekkddasepdlpdqnkeedkdeqeqqaeqeeqaqqqaeea..pvssdistalketnppaepi 323
                 ++p+a+s   rr +f+       +e    +++  +  a    l + +++e+++   qq +q++q+qqq++++  p  s++ t  ++  ppa+  
  CCE27475.1 337 QAPEASSPPPRRRFFT---PSGTNELVSLAIQRSRRTA---ALYEIQQQENQQ---QQQQQQQQQQQQPKQTrqPL-SQSRTHTNTLHPPAKAS 420
                 5666666666666666...2223333333333333333...344444544444...44444555555555555444.44555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3190  (0.177924); expected 358.6 (0.02)
Passed bias filter:                      964  (0.0537676); expected 358.6 (0.02)
Passed Vit filter:                       192  (0.0107089); expected 17.9 (0.001)
Passed Fwd filter:                        59  (0.00329076); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.49
# Mc/sec: 2923.03
//
Query:       CCE27476.1  [L=382]
Description: uncharacterized protein CPUR_00950 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0044   16.9   2.0      0.026   14.4   0.5    2.2  2  Prok-RING_4   Prokaryotic RING finger family 4
     0.0092   16.0   1.9      0.022   14.8   1.9    1.7  1  zf-RING_UBOX  RING-type zinc-finger
  ------ inclusion threshold ------
      0.022   14.6   1.3      0.022   14.6   1.3    2.0  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
      0.046   13.7   5.6       0.63   10.0   6.2    2.1  2  zf-RING_5     zinc-RING finger domain
      0.064   13.6   3.8       0.13   12.6   1.2    2.5  2  zf-RING_2     Ring finger domain
       0.08   12.8   3.1       0.19   11.6   1.2    2.1  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
       0.14   12.5   4.6       0.32   11.4   4.6    1.5  1  DMRT-like     Doublesex-and mab-3-related transcription facto
       0.19   11.9   2.6        1.1    9.4   2.6    2.1  2  FYVE          FYVE zinc finger
       0.36   10.7   3.2        1.2    9.1   3.4    1.7  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
        9.5    5.5   7.5         16    4.7   7.5    1.3  1  NicO          High-affinity nickel-transport protein
        9.9    5.5  12.8         16    4.8  12.8    1.2  1  SelP_N        Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.19   3.1e+02      29      40 ..     277     288 ..     271     293 .. 0.74
   2 !   14.4   0.5   1.6e-05     0.026      12      28 ..     317     333 ..     308     340 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.19
  Prok-RING_4  29 dlssCPlCqrri 40 
                    + CP C +++
   CCE27476.1 277 RVAVCPACGNEL 288
                  456799999887 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.6e-05
  Prok-RING_4  12 ilepCgHlvCkeCfdsk 28 
                  +++ CgH+ C +Cf++ 
   CCE27476.1 317 AVKKCGHVYCADCFEHR 333
                  6889**********986 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.9   1.4e-05     0.022      15      26 ..     320     331 ..     281     346 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.4e-05
  zf-RING_UBOX  15 pCGHtFCreClw 26 
                   +CGH++C +C +
    CCE27476.1 320 KCGHVYCADCFE 331
                   6*********92 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1         2   3.3e+03      37      40 .]     281     284 ..     275     288 .. 0.79
   2 ?   14.6   1.3   1.3e-05     0.022      15      28 ..     318     331 ..     315     338 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2
  zf-C3HC4_2  37 CPlC 40 
                 CP C
  CCE27476.1 281 CPAC 284
                 8887 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.3e-05
  zf-C3HC4_2  15 vtpCgHvfCqkCil 28 
                 v++CgHv+C++C+ 
  CCE27476.1 318 VKKCGHVYCADCFE 331
                 79**********97 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.22   3.6e+02      35      43 ..     277     285 ..     268     286 .. 0.74
   2 ?   10.0   6.2   0.00039      0.63      14      33 ..     308     334 ..     280     342 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.22
   zf-RING_5  35 keavCpiCr 43 
                 + avCp+C+
  CCE27476.1 277 RVAVCPACG 285
                 5689****7 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00039
   zf-RING_5  14 k.......fyltsCgHifCekClkkll 33 
                 +         + +CgH++C +C+ ++ 
  CCE27476.1 308 RaagdhhfWAVKKCGHVYCADCFEHRR 334
                 1344444244679**********9876 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.62     1e+03      39      43 ..     276     284 ..     268     287 .. 0.69
   2 ?   12.6   1.2   8.1e-05      0.13      18      32 ..     318     332 ..     309     340 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.62
   zf-RING_2  39 t....CPlC 43 
                 +    CP+C
  CCE27476.1 276 ErvavCPAC 284
                 145679999 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 8.1e-05
   zf-RING_2  18 llpCgHvfhreCler 32 
                 +++CgHv++ +C+e+
  CCE27476.1 318 VKKCGHVYCADCFEH 332
                 457**********87 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.37   6.1e+02      38      46 ..     279     287 ..     272     290 .. 0.72
   2 ?   11.6   1.2   0.00012      0.19      17      34 ..     318     334 ..     312     339 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.37
                 -B-TTT--B CS
  zf-C3HC4_3  38 kkCpiCrrp 46 
                 + Cp C  +
  CCE27476.1 279 AVCPACGNE 287
                 678888765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00012
                 ETTEEEEEE-HHHHHHHH CS
  zf-C3HC4_3  17 llpCgHlvlCeeCaekll 34 
                 + +CgH+ +C +C+e+ +
  CCE27476.1 318 VKKCGHV-YCADCFEHRR 334
                 668****.*******984 PP

>> DMRT-like  Doublesex-and mab-3-related transcription factor C1 and C2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.6    0.0002      0.32       8     111 ..      29     142 ..      24     147 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
   DMRT-like   8 ppalpktcstlIlqp.catldplllQPqvpeassealvsaasEwqrklEAAeALlaLrdSpqap.........pdsisllqpcgppapagdrglqs.ps 95 
                 p+ ++  +s+ Il++ +++ +p l     p +s+ a ++a s  qr  EA    laL    ++p         pds+     ++p a+ag+  +++ ++
  CCE27476.1  29 PTPRAPLYSQQILRSiRGPNGPTLGTTHLP-QSDAARSTARSRIQRETEARPSPLALPSQVPPPpavidlteePDSPLDRGRSQPGAQAGQNPRRTgSQ 126
                 555666788889988345556776666666.9*************************988888844555544444444444466669999988776245 PP

   DMRT-like  96 pslrprpapsvslhiG 111
                 + + p+ a s s  +G
  CCE27476.1 127 RITPPSLARSDSTFVG 142
                 6677888888776555 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.18   2.9e+02      51      65 ..     273     287 ..     251     290 .. 0.71
   2 ?    9.4   2.6   0.00068       1.1       5      47 ..     274     337 ..     270     371 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.18
                 TEEEEEEE-HHHHHH CS
        FYVE  51 aeeksvrvCkeClae 65 
                 +++++v vC +C +e
  CCE27476.1 273 TSDERVAVCPACGNE 287
                 444555555555554 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00068
                 ...--SB-TTT--B--S..................SS--EE...-TTT--EE-STTS-EEE.EE CS
        FYVE   5 ddsevkkCeiCakkFsl..................lrrrhh...CrlCGkvvCekCssklvall 47 
                 +d++v+ C++C ++  +                      hh    + CG+v+C++C +++ ++ 
  CCE27476.1 274 SDERVAVCPACGNELAYdpsdgpaaqstaaskrkrAAGDHHfwaVKKCGHVYCADCFEHRRPTK 337
                 57778888888888874444444444444433222233366333489**********9988655 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.4   0.00073       1.2      13      29 ..     317     333 ..     281     340 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00073
                 .E-TTS--B-CHHHHHH CS
    zf-C3HC4  13 elleCkHsfCskCirki 29 
                  + +C+H +C +C ++ 
  CCE27476.1 317 AVKKCGHVYCADCFEHR 333
                 6789*********9875 PP

>> NicO  High-affinity nickel-transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   7.5    0.0098        16     123     173 ..     167     213 ..     146     225 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0098
        NicO 123 akrgllsrilgklfrlitkswhmypvgflfglGfdtateiallaidpseal 173
                  +r+++ + ++++++  t+s h +  + l+  Gf  ++++++l++ +s  +
  CCE27476.1 167 GGRHHHHHHHHHHHHPTTNSFHRD--H-LIEVGFLNDHNGRVLSNFSS-NF 213
                 345555555554555555555544..4.6799*********9998777.55 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  12.8      0.01        16     186     209 ..     162     186 ..     144     202 .. 0.53

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.01
      SelP_N 186 hahshkqghkhhekhghhHke.kee 209
                 ++ +    h+hh++h+hhH++ +++
  CCE27476.1 162 AHGTAGGRHHHHHHHHHHHHPtTNS 186
                 3333323344444444444441333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2678.59
//
Query:       CCE27477.1  [L=493]
Description: related to non-snRNP spliceosome component (pre-mRNA splicing protein PRP19) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-31  107.9   2.5    3.4e-31  107.0   2.5    1.5  1  Prp19         Prp19/Pso4-like
    3.8e-14   52.8   0.6     0.0099   16.7   0.0    5.3  5  WD40          WD domain, G-beta repeat
    9.5e-11   41.9   0.0     0.0069   16.7   0.0    4.8  5  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
     0.0015   18.7   0.0     0.0037   17.4   0.0    1.7  1  U-box         U-box domain
     0.0035   17.7   1.0      0.009   16.4   0.3    2.0  2  V_ATPase_I_N  V-type ATPase subunit I, N-terminal domain
     0.0066   16.2   0.0      0.013   15.3   0.0    1.5  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
       0.07   12.2   0.4       0.28   10.2   0.1    1.8  2  VID27         VID27 C-terminal WD40-like domain


Domain annotation for each model (and alignments):
>> Prp19  Prp19/Pso4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   2.5   1.3e-34   3.4e-31       2      67 ..      66     131 ..      65     132 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 1.3e-34
                 SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
       Prp19   2 atSiPslLstlqnEWDalmletfelrkqleqtrqeLsqaLYqnDAAvrViArllkerdearealae 67 
                  tSiP+lL+t+qnEWD l+let++l++ql+ tr+eL++aLYq+DAAvrViArl kerdear+ l++
  CCE27477.1  66 LTSIPALLATFQNEWDTLALETYNLKEQLARTREELATALYQHDAAVRVIARLAKERDEARDSLSK 131
                 69*************************************************************987 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.49   1.3e+03      20      37 ..     259     275 ..     243     276 .. 0.69
   2 !   11.1   0.0   0.00022      0.57       5      38 .]     282     316 ..     278     316 .. 0.85
   3 !   16.7   0.0   3.9e-06    0.0099      12      37 ..     331     356 ..     324     357 .. 0.90
   4 !    7.2   0.0     0.004        10      12      33 ..     372     393 ..     362     399 .. 0.82
   5 !   10.2   0.0   0.00045       1.1      11      29 ..     416     434 ..     408     437 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.49
                 TTSSEEEEEETTSEEEEE CS
        WD40  20 pdgawlasGsdDgtvriW 37 
                 + ++++++ s +g+v+++
  CCE27477.1 259 DGSRYFFATS-KGSVKVY 275
                 3445577779.*****98 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00022
                 EEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 
                  +l+ H ++vt+l  +p+++ l + G  D+ + ++d
  CCE27477.1 282 ASLSEHaGPVTGLTMHPSSDILgTVGA-DKRIILYD 316
                 57899*889************954466.***99998 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 3.9e-06
                 SEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriW 37 
                 s t +af+pdg+++a+Gs++g v+++
  CCE27477.1 331 SLTTCAFHPDGHLFAAGSMNGDVKLY 356
                 57999*******************97 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.004
                 SEEEEEEETTSSEEEEEETTSE CS
        WD40  12 svtslafspdgawlasGsdDgt 33 
                 +v +l fs +g wla++ +D+t
  CCE27477.1 372 PVQALTFSENGFWLAAAAKDQT 393
                 6999***********9987765 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00045
                 SSEEEEEEETTSSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGs 29 
                 +sv +la++ +g++la+G+
  CCE27477.1 416 GSVECLAWDYSGQFLATGG 434
                 35***************97 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.2   3.2e+03      54      79 ..     223     248 ..     216     256 .. 0.79
   2 !    7.2   0.0    0.0024       6.2      13      77 ..     266     327 ..     263     335 .. 0.82
   3 !   16.7   0.0   2.7e-06    0.0069       6      91 ..     299     380 ..     298     381 .. 0.80
   4 !    5.3   0.0    0.0091        23      37      69 ..     369     402 ..     362     413 .. 0.82
   5 !   13.9   0.0   1.9e-05     0.049      13      91 ..     389     467 ..     384     468 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
  ANAPC4_WD40  54 avaysdgevrlldaesgkvvhslsvk 79 
                  a +  +ge +++++e++++ ++l ++
   CCE27477.1 223 ALGGLNGEASIYNIEDATIQRQLCIG 248
                  66778999********9998887665 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0024
  ANAPC4_WD40  13 atedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                  at++g++ v+R  g+   +l  +++ + v++L  +p+  +L  + +d ++ l+d  + k  +   
   CCE27477.1 266 ATSKGSVKVYRA-GHGFASL--SEHAGPVTGLTMHPSSDILGTVGADKRIILYDLATMKRASRAY 327
                  788888888886.5666666..7999****************************99988776655 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 2.7e-06
  ANAPC4_WD40   6 tmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                  + D++  + +d++++++ l   +  +  ++  ds+ +  a++pdg+l+a +  +g v+l+   + +    +++++   v+ l+++e
   CCE27477.1 299 SSDILGTVGADKRIILYDLATMKRAS--RAYADSSLTTCAFHPDGHLFAAGSMNGDVKLYMTTTLEQAVVFKAGAP--VQALTFSE 380
                  56777777777777777765444333..3689999***************************99999999999988..88888876 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0091
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdg.evrlldaes 69 
                   +  v++L ++++g  La a +d  +v ++d  +
   CCE27477.1 369 AGAPVQALTFSENGFWLAAAAKDQtTVTVFDLRK 402
                  5789***************999874788887765 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 1.9e-05
  ANAPC4_WD40  13 atedgellvfRlngq.rvwtleedkedsevrsLaWkpdgklLavaysdg.evrlldaesgkvvhslsvksekavtclgWge 91 
                  a ++  + vf l  +    t++  +++++v++LaW  +g++La +   g +v+ +  +s++  + +++++   v  lgWge
   CCE27477.1 389 AKDQTTVTVFDLRKEgSAATAKVLETGGSVECLAWDYSGQFLATGGPSGvTVQQYTKSSKRWSEPFRTSDP--VIGLGWGE 467
                  555556666655332133344567889******************99998999999999999999999988..99999986 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06    0.0037       6      55 ..       2      51 ..       1      56 [. 0.88

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.5e-06
                B-TTT-SB-SSEEEETTT.EEEEHHHHHHHHTT.SSB-TTT-SB--GGGSE CS
       U-box  6 ldpitlelmkdPvilpsg.vvvdrstiekhllsrdktdPftrepltqdqli 55
                l+ i+ e  ++Pv++  + +v+++  ie+++++ ++t+P t e+lt d+l+
  CCE27477.1  2 LCGISGEAPQEPVVSKKSgIVYEKRLIEQYIKE-NSTEPSTGEALTADDLV 51
                56777777789*9997666**************.************99986 PP

>> V_ATPase_I_N  V-type ATPase subunit I, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   3.5e-06     0.009      36      85 ..      83     134 ..      62     136 .. 0.76
   2 ?   -2.4   0.0       2.6   6.7e+03      68      83 ..     166     181 ..     154     183 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.5e-06
                   HHHHHHHHHHHHT.TSSEEEEEESSSS.EEEEEEEECCCHHHHHHHHHCCT- CS
  V_ATPase_I_N  36 leeleaaLreaLe.dRyalateavgkn.rvavvvvlrgeldaaraaLsrvrl 85 
                   l+     L+e+L+  R +lat  +++   v v++ l++e+d+ar +Ls+v +
    CCE27477.1  83 LALETYNLKEQLArTREELATALYQHDaAVRVIARLAKERDEARDSLSKVTI 134
                   44445679999963699*****99876157799****************976 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.6
                   EECCCHHHHHHHHHCC CS
  V_ATPase_I_N  68 vlrgeldaaraaLsrv 83 
                   vl + +++a+ aLs+ 
    CCE27477.1 166 VLIERVEEAHQALSKG 181
                   4445566677777764 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.2e-06     0.013      14      48 ..       3      37 ..       1      40 [. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.2e-06
                -TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS- CS
      zf-Nse 14 CPltlqpfeePvtskkCpHvFEreaIlelikrkkt 48
                C ++ +  +ePv skk   v+E++ I+++ik++ t
  CCE27477.1  3 CGISGEAPQEPVVSKKSGIVYEKRLIEQYIKENST 37
                99999999**********************88765 PP

>> VID27  VID27 C-terminal WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.2   5.1e+02     167     210 ..     228     271 ..     204     276 .. 0.74
   2 ?   10.2   0.1   0.00011      0.28     155     216 ..     337     400 ..     313     415 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.2
       VID27 167 kGdirlfdrlginaktalPalgdpiigldvsadG.rwvlatckty 210
                  G+  +++      + +l  +g++i+   +s dG r+ +at+k +
  CCE27477.1 228 NGEASIYNIEDATIQRQL-CIGEAITSTLSSKDGsRYFFATSKGS 271
                 555555554444444444.69******999*9997899**99865 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00011
       VID27 155 ttekGyi.avasekGdirlfdrlginaktalPalgdpiigldvsadGrwvlatck..tyllLiDa 216
                    +G++ a +s  Gd++l+ +   +  + +   g p++ l+ s++G w+ a++k  t++ ++D 
  CCE27477.1 337 FHPDGHLfAAGSMNGDVKLYMTTTLEQ-AVVFKAGAPVQALTFSENGFWLAAAAKdqTTVTVFDL 400
                 44466653889*********9988765.566677*****************99972234444454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3351.41
//
Query:       CCE27478.1  [L=174]
Description: uncharacterized protein CPUR_00952 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-40  137.3   0.0    6.4e-40  137.2   0.0    1.0  1  OHCU_decarbox  OHCU decarboxylase


Domain annotation for each model (and alignments):
>> OHCU_decarbox  OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   0.0   3.6e-44   6.4e-40       2     154 ..      13     170 ..      12     171 .. 0.95

  Alignments for each domain:
  == domain 1  score: 137.2 bits;  conditional E-value: 3.6e-44
                    CS-HHHHHHHHCCCSTTHHHHHHHHH....CGS-SSHHHHHHHHHHHCCCS........-HHHHHHHHCTS--TTSCCCHHTHCHHHHHHHCCCTT CS
  OHCU_decarbox   2 alseeeltavldtlfepspwlaelal....arpfssyeaLiaavaealeal........seeelleilsaHPrLGekaakkkklsalsrkEqaglg 85 
                    +l+e+ +t++ld lfepsp +++ +l    ++++ssy++Li+ ++ al +l        +   ll+i+++HPrLG++    +  sals++Eqa+l+
     CCE27478.1  13 SLPEAYQTETLDLLFEPSPAIHATLLpiilKASYSSYTDLIERCRVALFELaasspmsrPSRTLLSIIGSHPRLGAR----QIDSALSKAEQANLA 104
                    78999*********************999855*******************99999998888**************5....468***********9 PP

                    TTCHHHHHHHHHHHHHHHHHHH.SS-----GCC--HHHHHHHHHHHTTS.-HHHHHHHHHHHHHHHHHHHH CS
  OHCU_decarbox  86 laaseeeleeLaelnaeYeekF.GlrfvvfvngrsrkeIlaelerRlen.dpekElrealqemckIardRl 154
                          e e++a++n+eYeekF Glrfv+fv g+sr eIl+ ++ R+++ d  kE+ e l++mc+Ia  R+
     CCE27478.1 105 -----GEGEHFARMNREYEEKFpGLRFVIFVDGQSRPEILEVMQLRINRgDFTKEVVESLEAMCEIAMNRA 170
                    .....899************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1275.88
//
Query:       CCE27479.1  [L=598]
Description: uncharacterized protein CPUR_00953 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-58  195.0   0.0    5.4e-58  194.3   0.0    1.3  1  COX5B     Cytochrome c oxidase subunit Vb
    2.1e-14   54.4   2.5      4e-14   53.5   0.1    2.2  2  4HBT_3    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> COX5B  Cytochrome c oxidase subunit Vb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.3   0.0     6e-62   5.4e-58       3     129 .]     448     575 ..     446     575 .. 0.98

  Alignments for each domain:
  == domain 1  score: 194.3 bits;  conditional E-value: 6e-62
       COX5B   3 kkaktakklaevkgeesligpgakegtvPtdleqatGleRlellgkleGidvfdmkPldasrkGtledPilvesydderyvGctGspadshkviWlkve 101
                 k+++++k+l+e+k+e++l+gpga++gt+PtdleqatGleRle+lgk+eGid+fdm+PldasrkGt+edPilv+s   e+++GctG padsh v+Wl+v+
  CCE27479.1 448 KNVTNYKTLSEIKSEDDLFGPGAEPGTIPTDLEQATGLERLEILGKMEGIDIFDMRPLDASRKGTMEDPILVRSAGPEQFAGCTGFPADSHIVQWLRVD 546
                 678899********************************************************************************************* PP

       COX5B 102 kek.vaRcaecGsvyklkllgeeedehhh 129
                 +e+ ++RcaecGsvyk++++g+e+d+h+h
  CCE27479.1 547 RERpIERCAECGSVYKINYVGPEDDHHAH 575
                 ***9*********************9998 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.1   4.4e-18     4e-14       3     224 ..      76     355 ..      74     357 .. 0.74
   2 ?    0.1   0.4     0.085   7.7e+02      83     138 ..     423     508 ..     404     559 .. 0.42

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 4.4e-18
                 GGGECTTC.-HHHHHHHHHHHHHHT................-S.SSEEEEEEE-S---SE.EEEEEEEEEE--SS-EEEEEEEEE.............. CS
      4HBT_3   3 ppwtpggagyGGyvlAlalraaqrtv...............pdprlhslhvyFlrpgdag.pviyhvervrdGrsfstrtvelsq.............. 71 
                 pp++ g ++yGG+v A+a  aa r++               p+p++hs+h+ F  pg  + p+++ v  +  +r+f  r+v ++q              
  CCE27479.1  76 PPRHSGLGVYGGCVYAQASLAAARAIeeeerqreeasvdvkPRPGIHSIHGIFTTPGLGDrPFVFDVSSLTSTRTFFGRRVDARQpkqsssdpdgpfpd 174
                 899999999*********99999998899999*******9999999***************************************99999999888887 PP

                 ......TTEEEEEEEEEEE---T................---......EE-------.GGGE---.--SSGGGS.GG..TEEEE-HHT---S....... CS
      4HBT_3  72 ......ggrpiftatasfgraes............tgwelep......aaapppvpppdeaalaadeaplplfr.rvpgflepfeprpaeggkpdspag 145
                        +  +f+++ ++ r+++            +            + ap++  p++++ + +  a +p++   +  +l+ f   +    ++d++ +
  CCE27479.1 175 sdarlpLKDICFSCITTLKRPTDgvddvqssesaqK-----RyadilsQRAPHQWEPAPQVDVDMITALFPEAGhGAFPMLDMFKVDMSAY-NQDKEVP 267
                 76655323689*********9997877765554441.....12333333334333333333333335666666655555666666665532.3444444 PP

                 S-EEEEEEEET....TTS-SSHHHHHHHHTT-..-GGGGTSS-......SB--EEEEEEEE-S--S-........EEEEEE-SEEETTE CS
      4HBT_3 146 pkrvrqWvrlr....eggepahlaaLaylsDsf.pvprvhglrldaeasgwmpsldltiyfhrepae.....deWllleaetpwagdgr 224
                 ++r+ +  r+     +++ + h a+ a+ +D    ++ ++++   +   g++++l+ + y+h +p++     + W+l e++ p+++  r
  CCE27479.1 268 DRRQLMLYRPLkpipKDDINGHIACHAFEADRNgLIMLGNQMGYGVN-MGMAATLSYSFYVHCNPEVavmdgEGWWLQEINWPRVAASR 355
                 4444445555447744445789999*******557799999997644.59*************99424577778**9999988887666 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.085
                 EE---T.....---EE-------.GGG.E---.........................--SSGGGSGG.............TEEEE-HHT---S CS
      4HBT_3  83 fgraes.tgwelepaaapppvpppdea.alaad........................eaplplfrrv...........pgflepfeprpaegg 138
                 f r+e+ +g + ++++a+pp p+++++ +  ++                        e+       +            + ++ f++rp + +
  CCE27479.1 423 FIRREAaKGPTTTNEQAAPPAPAAQKNvTNYKTlseikseddlfgpgaepgtiptdlEQ-------AtglerleilgkMEGIDIFDMRPLDAS 508
                 44444332222333333444444322212222244444444444433333333332211.......012222222333345555555555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4167.00
//
Query:       CCE27480.1  [L=176]
Description: uncharacterized protein CPUR_00954 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-33  116.3  19.0    2.2e-33  116.1  19.0    1.0  1  DUF4604   Domain of unknown function (DUF4604)
  ------ inclusion threshold ------
      0.031   14.3   1.0      0.031   14.3   1.0    2.1  2  DUF3005   Protein of unknown function (DUF3005)


Domain annotation for each model (and alignments):
>> DUF4604  Domain of unknown function (DUF4604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1  19.0   2.4e-37   2.2e-33       1     173 []       8     175 ..       8     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 2.4e-37
     DUF4604   1 knLsYsaeePaFLarLkaqvagkesedpilagkrralpkkrdeseeeDeaPqVVvlkeGkhlsaeevevekdaakgkekeeeeeeeeegeeaeed.ief 98 
                 knLsY++++P+FL+rL+aq++g ++++pila+++r+  kkr++see+++aP+VV++ +G+ +   +v+ e+d ++++e e++++++++++e++e  i+ 
  CCE27480.1   8 KNLSYNSSLPPFLQRLHAQAGGATGPNPILAAQKRS-VKKRSSSEEAEDAPLVVDE-HGDSV---DVQFERD-GTIREVERKTDPAKPDDEHDESaIKS 100
                 79*****************************99999.999***************9.*****...**77777.*****777788888888877755544 PP

     DUF4604  99 kkpkkasikekasslaaksskkkkkgkvvgeedeeeed...kskakkkekekkkakkkkkkkkkkkkkkklLSFgdde 173
                 ++++ ++++   +++++ +++k+k gkv+g++ +e+     + ++k++++ k+ka+ +kk kkk+++kk +LSF +de
  CCE27480.1 101 NATTVKAVA---EKASSMGARKRKIGKVIGQDFSEAGAkseDVQDKNRADRKDKAQVDKKGKKKAAAKKVKLSFQEDE 175
                 444444443...3344444579999999999987666577778888889999999999999****************8 PP

>> DUF3005  Protein of unknown function (DUF3005)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.0   3.5e-06     0.031      17      62 ..      61     116 ..      39     127 .. 0.79
   2 ?   -0.2   1.5      0.11   9.4e+02      14      35 ..     145     166 ..     129     175 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.5e-06
     DUF3005  17 eatDntvDt....DgKnleAareaselq......DnvitSnAslvnavpepddgla 62 
                 + ++++vD+    Dg  +e +r+ ++++       ++i+SnA++v av+e++ +++
  CCE27480.1  61 DEHGDSVDVqferDGTIREVERKTDPAKpddehdESAIKSNATTVKAVAEKASSMG 116
                 4567777766666899999999988888887775579**************99997 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.11
     DUF3005  14 andeatDntvDtDgKnleAare 35 
                 ++d+     vD  gK+  Aa++
  CCE27480.1 145 RADRKDKAQVDKKGKKKAAAKK 166
                 3344444569999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1148  (0.0640303); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1362.51
//
Query:       CCE27481.1  [L=501]
Description: related to KTR5-putative mannosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-95  317.6   6.3    4.1e-94  315.5   6.3    1.8  1  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.5   6.3   2.3e-98   4.1e-94      43     324 ..     106     420 ..      94     421 .. 0.89

  Alignments for each domain:
  == domain 1  score: 315.5 bits;  conditional E-value: 2.3e-98
  Glyco_transf_15  43 lvnrgrkPie.denenAtllalvrnselakilrsikkvekrFnkkfnYpyvfindepftekfkekieklveeadvefgeipkeewsyPefidee 135
                      +v+   +P + +   nAt+++l+rn+el  +l+s+k++e++Fn+ ++Ypyvf+nd +f+++fke++++ ++ + vefg++ ++ w +P++ d++
       CCE27481.1 106 FVTGCLEPDTsQPRANATFVVLARNKELDGVLQSLKSMERHFNRWYHYPYVFLNDGEFDDHFKETVRNHTS-GPVEFGKVGPDMWGFPDWADHK 198
                      445556775545667********************************************************.********************** PP

  Glyco_transf_15 136 kaakareelad..iaygdsesyrhmcRyysGlfykhellkkydyYwRvePdiklycdieyDvfkymkdekkiygFtlslkeieetiktlWdstk 227
                       a++   +  d  ++yg  esy++mcR+ysG+f++h+ll ky++YwRveP+i  +cdi yD f  m +++k ygFt+++ke  et+++++    
       CCE27481.1 199 VAKEGIAKQGDaaVMYGGLESYHFMCRFYSGFFFNHPLLLKYEWYWRVEPEITYFCDITYDPFLKMIEHNKTYGFTIAVKELRETVPNIFRYAS 292
                      **99888887777****************************************************************************99888 PP

  Glyco_transf_15 228 kflke........nkefieeknslsflsdddqd..........................tynlCeFwsnfeigdldffrseayekfFeylDskG 287
                       + +          + f+e k+ ++  ++   d                          +yn+C+Fwsnfei++l +frs++y++fFe +D++G
       CCE27481.1 293 AYKRLnnltsqglWEMFVEPKDPVEEKKE---DlpdevlkndpannappnidpqemegeKYNMCHFWSNFEIAKLSWFRSKEYNDFFEMMDRSG 383
                      88655223333433344554444443333...1555999999**************************************************** PP

  Glyco_transf_15 288 gffYerWgdapvhsiavslllpkdkihffedigyshd 324
                      gf+ erWgdap+hs+a+  ll  ++ih+f+digy h+
       CCE27481.1 384 GFWMERWGDAPIHSLAAGALLGVKDIHYFRDIGYRHT 420
                      **********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3495.11
//
Query:       CCE27482.1  [L=553]
Description: uncharacterized protein CPUR_00956 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4021.14
//
Query:       CCE27483.1  [L=576]
Description: uncharacterized protein CPUR_00957 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 4083.09
//
Query:       CCE27484.1  [L=299]
Description: related to MVP1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-31  108.8   1.6    5.5e-31  107.9   1.1    1.7  2  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27


Domain annotation for each model (and alignments):
>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   1.1   3.1e-35   5.5e-31       1     128 []      69     193 ..      69     193 .. 0.94
   2 ?   -2.0   0.0       0.3   5.4e+03      91     107 ..     272     289 ..     257     293 .. 0.79

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 3.1e-35
                     GGGGTSSTTTTTTTTT-S--......S--.........---GGG..---EEEEHHHHHHTTTTGTTS------EEEGGGTTTTSSS.....SEEE CS
  Ribosomal_L27A   1 kGktgGrGhkGqkkrsgvkkkpgfeGGqmplyrrlpkrGfknskfkkeykvvnlkdLdelideerleladeaeeidleelaeaglikk.kdgvKv 94 
                     +Gkt+GrG kG+ +r  +k+k++f+GGq+pl+  + +rGf+n+ ++ + ++vnl++++++id++rl   d++++i+ +e+++++l+ + +dg+Kv
      CCE27484.1  69 HGKTSGRGSKGTGQR--GKVKAWFQGGQTPLIVSHGRRGFTNH-RALKISEVNLDQIQSWIDQGRL---DPSKQITPREIIKSNLVGSiRDGIKV 157
                     6**************..77889*******************74.47899*****************...7789*************999****** PP

                     E--S..---.--EEEESEE-HHHHHHHHHTT-EEEE CS
  Ribosomal_L27A  95 lgkg..eltkklkvkaskfSkkAkekIeaaGGkvel 128
                     l +g  +l++++++ +s++S++A+++IeaaGGkv++
      CCE27484.1 158 LSRGgeHLKQPIDIMVSRVSASAIAAIEAAGGKVTT 193
                     ***98899999**********************985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.3
                     SE.EEE--S---.--EEE CS
  Ribosomal_L27A  91 gv.Kvlgkgeltkklkvk 107
                      + Kv g++ +++++kv 
      CCE27484.1 272 LYfKVPGEKMVKRQVKVD 289
                     466999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2290.70
//
Query:       CCE27485.1  [L=794]
Description: related to MVP1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-18   64.2   0.1    2.2e-17   63.1   0.1    1.6  1  PX        PX domain
  ------ inclusion threshold ------
       0.07   12.8   0.0       0.19   11.5   0.0    1.7  1  DUF745    Protein of unknown function (DUF745)


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.1   2.4e-21   2.2e-17      26     112 ..     439     525 ..     422     526 .. 0.87

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 2.4e-21
                 EEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSS..CTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHHS CS
          PX  26 velktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsv..rkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFLev 112
                 ++ +  ++ ++v RrYsdF++L + L +++p + +P lP+k++  +    ++d +fiekrr+gL ++L+++++hp l++ + +  FL+v
  CCE27485.1 439 ITSH--RRGSKVIRRYSDFVWLLDCLHKRYPFRALPLLPPKRVALNGnhLSNDGAFIEKRRRGLARFLNSIVRHPILSQEQLVVMFLTV 525
                 3333..3468********************************77644677899**********************************86 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.1e-05      0.19      27     104 ..     694     775 ..     691     790 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.1e-05
      DUF745  27 qaaAaeaAakqvksqLAdkAlqAakAAeAaLaGKqqlveqleqelrea....eavvqeekkslqsseanakaaakaakqaqq 104
                 q++ a+ A+ ++k +   kA +  k AeA+++ K+++v+q ++++       ++ v  ++++++ s  n + a + +k a+ 
  CCE27485.1 694 QSNEAKLAGLRAKPEGGVKAGEIEKVAEAIIKDKEAIVQQHNRSVLVKecirDELVTFQSSQYHVSRWNQDWAGERVKYAEM 775
                 888999***********************************99985330011334444445555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 5959.73
//
Query:       CCE27486.1  [L=305]
Description: uncharacterized protein CPUR_00960 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0011   19.2   0.9     0.0043   17.2   0.3    2.1  2  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   2.4e-07    0.0043       3      45 ..      22      62 ..      20      63 .. 0.85
   2 ?   -0.3   0.0     0.073   1.3e+03      18      39 ..     231     254 ..     221     264 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.4e-07
                     SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrny 45
                     +W eeE+  Ll+   k    +k Ia +l ++te +cr++++++
       CCE27486.1 22 AWREEEESYLLQSRLK-KTPYKHIAAHL-NKTELACRLHYHQL 62
                     7999999998886544.488********.8**********986 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.073
                      HHTTC.HHHHHHHHT.SS-HHHHH CS
  Myb_DNA-binding  18 khGnr.WkkIaerlg.gRtekqcr 39 
                      +h n  W  +a+++g + ++    
       CCE27486.1 231 RHKNAfWGVVANEYGmNASPATLE 254
                      555557999999999887765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2301.43
//
Query:       CCE27487.1  [L=287]
Description: uncharacterized protein CPUR_00961 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-17   61.8   1.9    4.4e-10   39.6   0.3    2.2  2  Myb_DNA-binding  Myb-like DNA-binding domain
    2.9e-09   37.0   0.9    0.00021   21.5   0.1    2.5  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
          4    7.1   7.0        7.7    6.1   7.0    1.4  1  DUF1387          Protein of unknown function (DUF1387)
        9.4    4.4  22.4         11    4.2  22.4    1.2  1  PAT1             Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.3   9.9e-14   4.4e-10       3      44 ..     196     236 ..     194     236 .. 0.95
   2 !   21.7   0.1   3.9e-08   0.00018       4      39 ..     243     278 ..     241     283 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 9.9e-14
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44 
                      +Wt++E+++L +     Gn+W++Ia+ +++Rte +++ +w++
       CCE27487.1 196 PWTPQEELRLKQMRDA-GNSWAEIAKTFPTRTEGSVKKHWYK 236
                      8***********9987.***********************96 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 3.9e-08
                      SBHHHHHHHHHHHHHHT.TCHHHHHHHHTSS-HHHHH CS
  Myb_DNA-binding   4 WteeEdelLleavkkhG.nrWkkIaerlggRtekqcr 39 
                      + e+E + Ll+a+k++  n+Wk I +++ g+ +k+c 
       CCE27487.1 243 FAEDESQALLNAIKEYEnNKWKVIGQKV-GKPAKACE 278
                      6699*************999********.59999996 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   4.6e-08   0.00021       1      41 [.     197     236 ..     197     244 .. 0.89
   2 !   13.9   0.1   1.1e-05     0.049       3      36 ..     245     278 ..     243     283 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 4.6e-08
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwkn 41 
                     Wt++E+ +L k +++ gn W +Ia+ ++ Rt  +++ +w +
      CCE27487.1 197 WTPQEELRL-KQMRDAGNSWAEIAKTFPTRTEGSVKKHWYK 236
                     999998887.67999************99**********87 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.1e-05
  Myb_DNA-bind_6   3 eeEdeiLlklvekygn.dWknIaealnrRtpkqcf 36 
                     e+E ++Ll+  ++y+n +Wk I +  + + +k+c 
      CCE27487.1 245 EDESQALLNAIKEYENnKWKVIGQKVG-KPAKACE 278
                     78************8659******999.9999986 PP

>> DUF1387  Protein of unknown function (DUF1387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   7.0    0.0017       7.7      64     165 ..      37     143 ..      14     146 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0017
     DUF1387  64 kldtasldakeleseesasaeteeke......selelqkaevelepklvaksesseaqqksakkqq.kneskpksrtssessvkasskkevktddvqes 155
                 +++  +  a+++  ++++++++++++      ++ +++++++   p +++++++ +  q++a++ +  ++++ ++r+++++ +++++ +  +   ++  
  CCE27487.1  37 NDQFPPYGATQPGMTPQQQQQQQQQKqpgqppQQQQQHHVTPSQTPMSISQASNVPGPQPQAQPPTpVQSGRQRKRPAPATAPSPATAQSGTPAGAA-- 133
                 44444555555555555554444444456666777888888899999999999999999999999988999*******9999997775554443333.. PP

     DUF1387 156 sagkklgsni 165
                 s + + g+ni
  CCE27487.1 134 SQAHQPGQNI 143
                 4446666666 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  22.4    0.0023        11     221     329 ..      47     157 ..       9     258 .. 0.56

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0023
        PAT1 221 as.qqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilq..rpqskqakpaepsasseaqeakqqappakvqptqilq 316
                 ++  +P+++q++q++++  ++  +q+qq++ + +++ ++ +qa++ +  + q++p+t +q  r+++++a +++ps+ ++++ +   a+++ +qp q + 
  CCE27487.1  47 QPgMTPQQQQQQQQQKQPGQPP-QQQQQHHVTPSQTPMSISQASNVPGPQPQAQPPTPVQsgRQRKRPAPATAPSPATAQSGTPAGAASQAHQPGQNIS 144
                 1123343333333333332222.3333333333333333344444444444455444444113333334444444444444455566666667777777 PP

        PAT1 317 npnrlaarlelsq 329
                  p+  aa +++ +
  CCE27487.1 145 APQAAAAAATAAS 157
                 7776644443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1322  (0.0737353); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 1881.13
//
Query:       CCE27488.1  [L=623]
Description: probable ATP dependent RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-40  137.7   0.3    5.6e-40  137.0   0.3    1.4  1  DEAD         DEAD/DEAH box helicase
    8.9e-30  103.3   2.0    3.6e-29  101.4   0.1    2.7  3  Helicase_C   Helicase conserved C-terminal domain
    9.6e-07   29.0   1.2    1.4e-06   28.5   0.0    1.8  2  ResIII       Type III restriction enzyme, res subunit
    6.1e-05   21.5   1.3    8.1e-05   21.1   1.3    1.2  1  CDC45        CDC45-like protein


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.3   1.3e-43   5.6e-40       2     175 ..      56     229 ..      55     230 .. 0.92

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 1.3e-43
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST..SEEEEEETTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...kgktgpkalivePtreLaeqtlnnlkkfkkyid..lrvlliiggvaardqlskld 95 
                  +Q++aipl+l+g+dvl++ +TGsGKT+a+++p+l+ ++++   +++  + ali++PtreLa+q+++ +++f +++   +r++ ++ +++   q+s l+
  CCE27488.1  56 LVQRQAIPLALNGKDVLCKSKTGSGKTAAYVLPLLNGILKKksvDTTAVTSALILVPTRELANQVFKVIEQFSSFCAkdIRAVKLTDKSSDAVQRSLLS 154
                 68************************************9998777778889***********************84445999999999999*******8 PP

                 TTCSEEEEEHHHHHHHH..HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  96 ngvdivvgtpgrlddll..stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                  ++div++tp r    +  ++  l+l++++ lVlDEad ll+ g+ ++++++  ++       ++  q+ ++SATl+++++ 
  CCE27488.1 155 TSPDIVISTPARAWYNVksNQSALSLEKLSHLVLDEADLLLSYGYNEDLENLSWSI-------PKAIQTTMMSATLTSEIEA 229
                 88*************997767779********************************.......56678*********98875 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.45     2e+03      18      72 ..     106     162 ..      89     183 .. 0.64
   2 !  101.4   0.1     8e-33   3.6e-29       8     111 .]     271     438 ..     266     438 .. 0.93
   3 ?   -0.9   0.1      0.47   2.1e+03      31      60 ..     531     562 ..     507     569 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.45
                 EEEEEESSHHHHHH.HHHHHHHT......TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEE CS
  Helicase_C  18 kilifvntidrlek.vklllekk......gikvavlhgelpqnereeileqfnkgesdvLia 72 
                  +li v+t++ +++ +k++ e++      +i+++    +l+ ++ +++ ++  + + d++i+
  CCE27488.1 106 SALILVPTRELANQvFKVI-EQFssfcakDIRAV----KLTDKSSDAVQRSLLSTSPDIVIS 162
                 5788999999776555555.44432232233333....344444444444444444445555 PP

  == domain 2  score: 101.4 bits;  conditional E-value: 8e-33
                 HHH..HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGG............................. CS
  Helicase_C   8 ell..kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdv............................. 75 
                 +++  kl+ ++gk++ifv  +dr++++kl+ e++gi++++l++elp n+r++++e+fn++ +d++ia+d                              
  CCE27488.1 271 AYIifKLQLVKGKCIIFVGDVDRCYRLKLFFEQFGIRSCILNSELPVNSRIHVVEEFNRNVYDIIIASDEkeilgneekadeekeeeddaaqednadsk 369
                 33336999****************99*************************************************999999999999999999999999 PP

                 .................................GTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  76 .................................aerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                                                  ++rGid+++v  Vinfdlp++ +sy +riGRt+Rag
  CCE27488.1 370 peqdsldaekaaertkkrkeqkkraskrdkeygVSRGIDFKNVAAVINFDLPTSAASYTHRIGRTARAG 438
                 999999999999999999999999999999999999*******************************97 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.47
                 H.HHHHHHHT.TSTEEEESTTSTHHHHHHHHH CS
  Helicase_C  31 k.vklllekk.gikvavlhgelpqnereeile 60 
                 k  ++++e+  +++ ++++gel +  ++  l+
  CCE27488.1 531 KlKRYFEENPtEVNHLRHDGELRTARQQSHLK 562
                 245777555589999999**999998887776 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.1e-10   1.4e-06      23     141 ..      67     191 ..      38     224 .. 0.78
   2 ?   -2.7   0.6       1.1     5e+03     127     127 ..     363     363 ..     317     400 .. 0.52

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 3.1e-10
                 TTSEEEEEESTTSTHHHHH.HHHHHHH-S..........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..........-SEEEEEHH CS
      ResIII  23 rdkrglikmaTGtGKTlva.aklierllkkgkee.....kflflvprkslleqtleefkkflseaykeigkkvsgdkkka...kekdstnkkilvttiq 112
                 + k +l k  TG+GKT  + + l   +lkk++ +      +l+lvp+++l +q  + +++f+s ++k+i  ++  dk +    ++  st+ +i+++t  
  CCE27488.1  67 NGKDVLCKSKTGSGKTAAYvLPLLNGILKKKSVDttavtSALILVPTRELANQVFKVIEQFSSFCAKDIRAVKLTDKSSDavqRSLLSTSPDIVISTPA 165
                 55788999***********8889999999888779*******************************994444333333333555777888999999998 PP

                 HHHHTH........HHHTTT-SEEEEETG CS
      ResIII 113 sldadseeeeeeseellrdrfdviiiDEa 141
                 ++  +    ++++  l+ ++   ++ DEa
  CCE27488.1 166 RAWYNV---KSNQSALSLEKLSHLVLDEA 191
                 888887...56666666666667888887 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.1
                 H CS
      ResIII 127 e 127
                 e
  CCE27488.1 363 E 363
                 1 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   1.3   1.8e-08   8.1e-05      75     192 ..     281     398 ..     252     538 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.8e-08
       CDC45  75 eegvevyViDshRPwnleNlfgss...........eekerivvfDDgd..ieeeleeereayealeeeeesdeedeeeeeeddddeeeeeeeeedeede 160
                 + ++ ++V D  R + l+  f++            + ++ri v+++ +  +  ++    ++ e l +ee++dee+  eee+d  +e++ +++ e+++ +
  CCE27488.1 281 KGKCIIFVGDVDRCYRLKLFFEQFgirscilnselPVNSRIHVVEEFNrnVY-DIIIASDEKEILGNEEKADEEK--EEEDDAAQEDNADSKPEQDSLD 376
                 4489999999999999999997778888888888855666666655442111.1111222222222222222111..1111222222222222222222 PP

       CDC45 161 eedeeeskkkrksksdeeeesddddersrkrr 192
                  e+  e++kkrk+++++           +kr+
  CCE27488.1 377 AEKAAERTKKRKEQKKRA----------SKRD 398
                 222222222222222222..........1111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1782  (0.099392); expected 358.6 (0.02)
Passed bias filter:                      733  (0.0408835); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 4117.22
//
Query:       CCE27489.1  [L=457]
Description: probable cell wall protein UTR2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-46  157.8   3.2    2.9e-46  157.2   3.2    1.3  1  Glyco_hydro_16  Glycosyl hydrolases family 16
  ------ inclusion threshold ------
      0.028   14.9  10.8      0.089   13.3  10.8    1.8  1  Chitin_bind_1   Chitin recognition protein


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.2   3.2   3.2e-50   2.9e-46       5     176 ..      93     263 ..      89     264 .. 0.91

  Alignments for each domain:
  == domain 1  score: 157.2 bits;  conditional E-value: 3.2e-50
                     B-SEE-GGGEEEETTSEEEEEEEEEE.EEEEEECCEESSEEEEEEEE---STTEEEEEEEETGGTSTTEEEEEEEETT-TTEEEEEEEBTTBSGE CS
  Glyco_hydro_16   5 fevtwsksavsvengetltltldkes.gsrikskksflyGkvearikaaksaGvvtafylssedekahdEiDiEflGndtgkvqtnvygkGkgkr 98 
                      +++ +++ +  ++g ++ lt++k+s g+ + s+ +++yG+v+ar k+a+++Gvvtaf+l s   + +dEiD+Ef+G d g++qtn+y +G +++
      CCE27489.1  93 KDWVAQGEPA-SHDG-NVLLTMPKNSvGTVLASTTYMWYGNVKARFKTARGRGVVTAFILLS---DVKDEIDYEFVGVDLGTAQTNYYYQGITDY 182
                     5666666666.4457.9*******999*********************************99...9****************************8 PP

                     .EEEEETSS-TTTS-EEEEEEEETTEEEEEETTEEEEEEESSHHH.HT.....--EESEEEEEEEEEEBSHHHSSE-EEEEEEE CS
  Glyco_hydro_16  99 .ekrlslwfdptedfHtYaieWtpdkikfyVDgkpvrtltkkeae.ev....kyPqftpmkvavslwpgsdwateqgkvkidwa 176
                      ++ + + +d+  +fH+Y+i Wtpdki+++VDg++ rt  +k+++ ++     +Pq tp +v++s+wpg+  ++++g  ++dwa
      CCE27489.1 183 hNSGNITLSDTFRNFHEYEIRWTPDKIEWLVDGQVGRTKLRKDTWnATsqswMFPQ-TPARVQLSIWPGGAATNAKG--TVDWA 263
                     666777799************************************655775446**.********************..****8 PP

>> Chitin_bind_1  Chitin recognition protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  10.8   9.9e-06     0.089       9      35 ..      25      51 ..      19      53 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-06
                   ---STT-.EE-TTSBEEBSHHHHSTT-- CS
  Chitin_bind_1  9 atCplnv.CCSqyGyCGttsdyCgagCq 35
                    +Cp    CCSqyG CG++ +yC  gC 
     CCE27489.1 25 SKCPPDSpCCSQYGECGIG-AYCLGGCD 51
                   68966555*********97.7**87895 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3323.41
//
Query:       CCE27490.1  [L=402]
Description: uncharacterized protein CPUR_00964 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-46  158.5   0.5    1.9e-45  155.7   0.5    1.9  1  Lactonase     Lactonase, 7-bladed beta-propeller
     0.0053   15.3   0.0       0.88    8.0   0.0    2.2  2  Cytochrom_D1  Cytochrome D1 heme domain
  ------ inclusion threshold ------
       0.15   12.0   0.3        2.6    8.0   0.0    2.9  4  ECD           Extracellular Cadherin domain


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.7   0.5   3.1e-49   1.9e-45      10     330 ..      39     379 ..      26     388 .. 0.83

  Alignments for each domain:
  == domain 1  score: 155.7 bits;  conditional E-value: 3.1e-49
                 SS.TEEEEEEEETTTS-EEEEEEEEESS---SEEE-TTSSEEEEEET.STTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE-TTSSEEEEEETTTT CS
   Lactonase  10 geskgiytlkldtetgkltplelvaelenPsyLalspdgktlYavnetgeeggvsafaidkdsgeltllnkvssegaspchlsvdedgkllavAnYsgg 108
                 +++++i ++++  +  ++t+ + +    ++s+L + +  ++lYav+e+g++ ++ +++  +      ++n + ++ +  +hl++++d k+++ A Y++g
  CCE27490.1  39 STGNEILVVNF--DGTNFTEKSRTNVNISASWLMY-AGPQCLYAVDEEGNNTTMFTMNTADY---TMEINATAEGSHGLVHLALSKDTKHMVGAAYGAG 131
                 56889999999..888899999999999*******.99*********877777766666654...56889999999*********************** PP

                 EEEEEEB.TTSEBESECEEEE.....SSTTT-SSTTEEEEEE-TTSSEEEEEETTTTEEEEEEE.-TTS-EEEEEEEE-.STT--EEEEEE-T....TS CS
   Lactonase 109 svsvfpldadgslkeasqvlkhegsgpnperqesphaHsvvldpdgkfllvpDLGtDrvrvykldkatgkltepasvkl.ppgsGPRHlaFhp....dg 202
                 ++++f+ + dg    +s v + + ++  + +q++  +H++vldp+gk+ lv+DLG D++++ +  +++  +   + v + p+g+GPRH+aF p    + 
  CCE27490.1 132 AIDIFDTSGDGIKFLKS-VNTSSPHSAVSVNQTQTLPHQAVLDPTGKYFLVNDLGRDKMYILDSTNDS--FAIINYVPVePAGCGPRHGAFFPvgaaKA 227
                 *********98665554.44445556677789***************************999987777..777888866257***********887668 PP

                 SEEEEEETTTTEEEEE..EEE-TTT.EEEEEEEEESS-T.SS-S---EEEEEE-TTSSEEEEEETS.....STEEEEEEE-.....TTT-......... CS
   Lactonase 203 kiaYvvnELsstvsvf..sydeatg.aleelqtvstlpe.gftgknsaaeIrlspdgkflyvSnRg.....adsiavfavd.....eadg......... 278
                 ++  vv+E ++ v+++  +y  a+g ++ + q + t    +  + ++aae+ +++d+k++yvSnR      +d+ia f+++       +g         
  CCE27490.1 228 THYMVVCEKANLVNTYalQYGGAKGiEFYKAQSLLTFTTdEPPAGAAAAELIIAQDNKNMYVSNRVssnngTDTIAHFSISgwsndTTNGtefnpwanp 326
                 89999**********97788877778**999999998884588888*************************8888888885222222333333333333 PP

                 .-EEEEEEEE-SSS.--EEEE-TTSSEEEEEETTTTE.EEEEEEETTTTEEEEE CS
   Lactonase 279 .tltlveevstegkfPRdfaldpsgklllvanqksdn.vtvferdaetGkLtel 330
                  tl+lv+ +st+gk PR  +l+ +g+ llv+n + +  v+ ++r+ ++G L+e+
  CCE27490.1 327 vTLELVGLTSTGGKSPRMVSLTDDGETLLVGNMQGEMgVVALKRN-KNGTLDET 379
                 37*****************************97776648888886.78888877 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0     0.001       6.1      30     117 ..      57     151 ..      34     158 .. 0.63
   2 !    8.0   0.0   0.00015      0.88     167     208 ..     161     202 ..     150     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.001
                   EEE-STTEEEEEE-TT.SSEEEEEETTSE.EEEEESSSSSEEEEEE-SSEE....EEEEE--TTSEEEEEEEETTEEEEEE..TTT--EEEEEE- CS
  Cytochrom_D1  30 vletgyalHisrvfasdgRyvyvigRDgk.vtliDLwakeivaevkiGlna....rsvavSqddryvivgnYlPgqlvild..aetLelvkvisa 117
                   +  t+ ++ +s +       +y +  +g+ +t++ + +     e+++  +       +a S+d +++++++Y  g + i+d  ++ ++ +k + +
    CCE27490.1  57 KSRTNVNISASWLMYAGPQCLYAVDEEGNnTTMFTMNTADYTMEINATAEGshglVHLALSKDTKHMVGAAYGAGAIDIFDtsGDGIKFLKSVNT 151
                   3445566666654444467777777777525566666666666666555431112568999*******************933455666666655 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00015
                   EE--SSEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE CS
  Cytochrom_D1 167 ieaakflhDggldpdkRYflaaanaedkvavvdtkegklvil 208
                    +++  +h + ldp+++Yfl+   ++dk+ ++d+ ++  +i+
    CCE27490.1 161 NQTQTLPHQAVLDPTGKYFLVNDLGRDKMYILDSTNDSFAII 202
                   4567789*************************9999887765 PP

>> ECD  Extracellular Cadherin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.81   4.8e+03       4      15 ..      27      38 ..      25      61 .. 0.72
   2 ?    8.0   0.0   0.00043       2.6       9      53 ..      73     122 ..      66     126 .. 0.84
   3 ?   -0.0   0.0      0.14   8.3e+02      36      71 ..     151     186 ..     144     205 .. 0.82
   4 ?   -3.9   0.0       2.2   1.3e+04      23      31 ..     352     360 ..     339     363 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.81
         ECD  4 lsrtgppativa 15
                +srt +pati+ 
  CCE27490.1 27 SSRTTEPATILM 38
                578999999764 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00043
         ECD   9 ppativaideespngtilven.....mlikgraedpdetielslkdnvdy 53 
                  p  + a+dee +n+t++  n     m i+ +ae+    ++l+l ++ ++
  CCE27490.1  73 GPQCLYAVDEEGNNTTMFTMNtadytMEINATAEGSHGLVHLALSKDTKH 122
                 477889***********98766666699**************99877665 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.14
         ECD  36 aedpdetielslkdnvdywvildpikqrlylnstgr 71 
                 +++p  ++++   + + +  +ldp  + + +n  gr
  CCE27490.1 151 TSSPHSAVSVNQTQTLPHQAVLDPTGKYFLVNDLGR 186
                 677888888888999999999999999999999988 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 2.2
         ECD  23 gtilvenml 31 
                  t+lv nm+
  CCE27490.1 352 ETLLVGNMQ 360
                 589999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2979.95
//
Query:       CCE27491.1  [L=926]
Description: uncharacterized protein CPUR_00965 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-14   53.9   0.1    3.6e-14   52.6   0.1    1.7  1  Integrase_H2C2  Integrase zinc binding domain
    5.3e-08   33.1   0.0    2.6e-07   30.8   0.0    2.2  2  rve             Integrase core domain
      2e-07   30.8   0.2    3.9e-07   29.9   0.2    1.5  1  Chromo          Chromo (CHRromatin Organisation MOdifier) dom
     0.0039   17.4   0.0     0.0089   16.2   0.0    1.7  1  zf-H2C2         H2C2 zinc finger
  ------ inclusion threshold ------
        0.1   12.5   0.0       0.27   11.1   0.0    1.7  1  DUF4939         Domain of unknown function (DUF4939)
       0.26   11.4   1.2        1.1    9.4   1.0    2.2  1  Maf1            Maf1 regulator
        1.1    9.3   8.0       0.04   13.9   1.0    2.2  2  Smg4_UPF3       Smg-4/UPF3 family
        4.4    6.1   6.2          1    8.2   2.5    1.8  2  PA26            PA26 p53-induced protein (sestrin)


Domain annotation for each model (and alignments):
>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.1   1.6e-17   3.6e-14       5      57 ..     457     511 ..     455     512 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 1.6e-17
  Integrase_H2C2   5 lrkeilkeaHds..agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                     lr  ++k+aH+    +H+G +kt+++l + y W  ++kdv +y+++C+ C r+k+
      CCE27491.1 457 LRTALIKAAHEPkaFAHPGKNKTIKLLEKDYQWDDLKKDVGRYIRNCHACRRNKT 511
                     7999*************************************************97 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.9   4.3e+03      58      81 ..      81     101 ..      57     112 .. 0.61
   2 !   30.8   0.0   1.2e-10   2.6e-07      18     118 ..     542     641 ..     525     642 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.9
         rve  58 avarfggvepervlsDngseytsk 81 
                 a ++      ++  sD+g++++ k
  CCE27491.1  81 ATRNDR---EQTAFSDQGKTFVPK 101
                 333333...356789999999876 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 1.2e-10
         rve  18 pdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdnGkvErfhrtlk 116
                 +d+ g  y+ v++d  srli   + ++ ++a+ ++    r++ r +g  p +++sDn+  ++sk + ++ a  g+++++  + ++q++G vE +++ l 
  CCE27491.1 542 KDQYGYDYVWVFIDKLSRLISSLPGKKTDTAEILATRYYRFLFRHFGI-PSVWISDNAGPFISKFLVALNALTGTKHRHGSALHAQTQGAVEFTNQELD 639
                 3444499*********************99998888888888877777.***********************************************998 PP

         rve 117 de 118
                 ++
  CCE27491.1 640 QR 641
                 76 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.2   1.7e-10   3.9e-07       1      54 []     829     880 ..     829     880 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.7e-10
                 EEEEEEEEEEEETTEECEEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHHH CS
      Chromo   1 yeVerIidhrtdkdgleleYlVKWkglpysentWEpeenlekcfqelideFkkr 54 
                 +eVe+I+++r    +++l+Y V Wkg++++ +tW p+en ++    +++ F++r
  CCE27491.1 829 WEVEKILKSRLTGRNKTLQYQVSWKGCDPD-DTWYPAENFKNS-AMVLHDFHQR 880
                 79********8888888**********986.7*********99.7889999997 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     4e-06    0.0089       4      39 .]     472     507 ..     470     507 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4e-06
     zf-H2C2   4 tHlGinkltallarkYhwlgiketvseVissCkaCq 39 
                  H G nk+ +ll++ Y w  +k+ v + i++C aC+
  CCE27491.1 472 AHPGKNKTIKLLEKDYQWDDLKKDVGRYIRNCHACR 507
                 599********************************5 PP

>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.27      29      85 ..     133     190 ..     117     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
     DUF4939  29 petfdGdtdrlpefivqtlsymlvdektfssdalkvtflitrltGealewvl.pyikk 85 
                 pe f Gd+ ++  +i      +  d+ tf  ++ ++ fl + l G a++ v  +y  +
  CCE27491.1 133 PELFAGDASKFDSWITAFSDKIQEDDCTFRGESSRMRFLFSCLDGAAKRTVEtRYQSE 190
                 9**********************************************98875144444 PP

>> Maf1  Maf1 regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.0   0.00049       1.1      63     151 ..     194     287 ..      23     295 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00049
        Maf1  63 rktlayLiatLnasfpdYDFsslrsseFkke.......kslksvinnidstLsslveekyeelreklWklideeidlkdCdiYsYkpdedsdpfke 151
                  + la +i++L+++f d+D  ++  ++ +k+       +++  + ++++s  +  +    ++l++ lW++i   +d + ++  s +pd d + f+e
  CCE27491.1 194 YSCLAEMIQVLDTTFRDHDQAAAARERLRKMkytcesgTTFGAFLAEFNSVCQ-KADVPSSKLKQTLWDVIPADMDTSLSKK-SIDPDVDYEEFTE 287
                 56799**************9988777777771111122344455556666333.46677788999*******9999886654.5566666555555 PP

>> Smg4_UPF3  Smg-4/UPF3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   1.0       3.4   7.5e+03     136     152 ..      32      45 ..      20      74 .. 0.42
   2 ?   13.9   1.0   1.8e-05      0.04      59     164 ..     207     326 ..     203     333 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.4
   Smg4_UPF3 136 eseeeklaeeaeekeke 152
                 +++++++++   +++++
  CCE27491.1  32 DQDQDQDQD---QDQDQ 45 
                 111111111...11111 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.8e-05
   Smg4_UPF3  59 nfkdpedlvqfakkfdghvFvDskgnespaiv.ef.Apyqkv..pkkk...........kkkkdakqgtIekDpeylaFleslekeeeekeseseeekl 142
                 +f+d ++ ++ ++++++++++ + g+++ a + ef +++qk   p++k            + +   + +I+ D +y +F e ++ ++ +k++++e+  +
  CCE27491.1 207 TFRDHDQAAAARERLRKMKYTCESGTTFGAFLaEFnSVCQKAdvPSSKlkqtlwdvipaDMDTSLSKKSIDPDVDYEEFTEDVSRAAYAKQRANEQRRK 305
                 58888888888888888888888888886665233477777777665666778888887788888999****************999997777766666 PP

   Smg4_UPF3 143 aeeaeekekekeakkekktttp 164
                 +++ + +e++  +++++++ t+
  CCE27491.1 306 SRASRYAEQD-PKAQTQPKRTA 326
                 6665555544.44444444444 PP

>> PA26  PA26 p53-induced protein (sestrin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.5   0.00044         1     188     256 ..      31      98 ..       9     139 .. 0.67
   2 ?   -3.4   0.1       1.5   3.3e+03     267     289 ..     265     287 ..     196     316 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00044
        PA26 188 ksasasanekedsseeeeeelerkaaaeaeaevealmermkklqeeedeeeeaseeelserfekeeses 256
                 +++ +  +++++ +++  ++  +++ ae ++++++lm++m +l++ + e+e++++++ ++ f+ + ++ 
  CCE27491.1  31 QDQDQD-QDQDQDQDQDMANDINQTLAEMQQTLATLMSKMTALENGRAESEATRNDREQTAFSDQGKTF 98 
                 222222.23333444445556677788889999****************99888888888887665543 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.5
        PA26 267 aavasdlsryvedpefgyqdFar 289
                 a ++++ls+   dp+  y++F++
  CCE27491.1 265 ADMDTSLSKKSIDPDVDYEEFTE 287
                 33335555555555555655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (926 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1585  (0.0884043); expected 358.6 (0.02)
Passed bias filter:                      803  (0.0447878); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 6088.89
//
Query:       CCE27492.1  [L=330]
Description: related to members of the aldo/keto reductase family [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-36  126.0   0.0    2.8e-30  105.5   0.0    2.0  2  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0   1.6e-34   2.8e-30       2     194 ..      18     217 ..      17     223 .. 0.91
   2 !   18.6   0.0   4.9e-08   0.00087     236     292 ..     241     293 ..     227     295 .. 0.83

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 1.6e-34
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH.....-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkk.....srkkreeviiatKvdlrdaeiksglskenireslees 93 
                   +g+Gtwq        + e+ + +  al+aG++++D+A++Y    +++++Ge +k+     s+ kre+++i++K+      ++ ++ +e+++++l+++
    CCE27492.1  18 VGYGTWQAA------PGEVGNGVYEALKAGYRHLDLAKIY---GNQKEVGEGIKRaladiSGLKREDIFITSKL------WNNKHAPEHVEAALDDT 99 
                   677777555......5577888899***************...5555555544444444***************......***************** PP

                   HHHHT-S-EEEEEE-S--TTS-.....................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HH CS
  Aldo_ket_red  94 lkrLgtdyvDllllHrpdpslp....................sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllrel 170
                   l +L++dy+Dl+l+H+p    +                     ++ +++a++el k  k r++GvSnfs+e+le + +  ++ ++++qve ++   l
    CCE27492.1 100 LAELQLDYLDLYLIHWPVAFKSgddlfpktadgseaeldrsiTLAQTWKAVTELPK-SKTRSVGVSNFSIEHLEGVIAATGTVPAVNQVERHPR--L 193
                   *****************999989*******************************99.5******************9999*************9..* PP

                   HHTTHHHHHHHTT-EEEEBSTTGG CS
  Aldo_ket_red 171 eeegllelckkkgvpliaysplgg 194
                    +  l+e+c+kk++ + ays++g+
    CCE27492.1 194 PNPALAEYCAKKNIIITAYSAFGN 217
                   *********************997 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 4.9e-08
                   HHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 236 akehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                   a+ ++v++aq+ +++ +    + +vip++ +++++++n++    +l+e  ++ l++l
    CCE27492.1 241 AQGKKVTPAQVIVAWSV--LDNHTVIPKSVTPSRIRENFQEI--ELDETAIEDLKQL 293
                   445778***********..9**********************..7777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2537.43
//
Query:       CCE27493.1  [L=1095]
Description: related to RAD5-DNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-69  232.2   0.0    9.9e-69  231.7   0.0    1.2  1  SNF2_N        SNF2 family N-terminal domain
    4.7e-19   68.1   0.0    8.5e-19   67.3   0.0    1.4  1  HIRAN         HIRAN domain
    3.5e-15   56.3   0.0    7.6e-15   55.2   0.0    1.6  1  Helicase_C    Helicase conserved C-terminal domain
    5.8e-09   36.2   0.0    1.2e-08   35.1   0.0    1.6  1  ResIII        Type III restriction enzyme, res subunit
     0.0001   22.1   6.2    0.00023   20.9   6.2    1.6  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    0.00066   19.5   0.0     0.0013   18.5   0.0    1.4  1  CT_C_D        Carboxyltransferase domain, subdomain C and D
    0.00093   19.0   8.4      0.002   18.0   8.4    1.6  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
     0.0029   17.4   0.1     0.0091   15.8   0.1    1.9  1  UBA_4         UBA-like domain
     0.0035   17.2   6.9     0.0067   16.3   6.9    1.5  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0046   17.3   9.7      0.015   15.6   9.7    2.0  1  zf-RING_2     Ring finger domain
  ------ inclusion threshold ------
      0.012   15.8   0.0       0.16   12.2   0.0    2.8  2  AAA_22        AAA domain
      0.047   13.7   8.7       0.11   12.5   8.7    1.6  1  zf-RING_UBOX  RING-type zinc-finger
       0.26   11.3   8.3       0.68    9.9   8.3    1.8  1  zf-RING_5     zinc-RING finger domain
        2.8    7.8   5.3        1.8    8.4   0.4    2.5  2  zf-UBP_var    Variant UBP zinc finger


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.7   0.0   7.7e-72   9.9e-69       1     350 []     402     795 ..     402     795 .. 0.81

  Alignments for each domain:
  == domain 1  score: 231.7 bits;  conditional E-value: 7.7e-72
                 HHHHHHHHH........................................................HHHHHTT--EEE---TTS--HHHHHHHHH..... CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
      SNF2_N   1 yQkeavkwmlkReqnlqdlea.alrkllk................tldgekiyvnpatgevveesaeakqsvrGGiLaDemGLGKTvqvlalilaqr.. 80 
                 yQk++++wm+ +e+ +  +   a++ l++                     k yvnp++g ++ + + ++q+  GGiLaDemGLGKT+q+l+l++++r  
  CCE27493.1 402 YQKQSLHWMMAKEKDERANREpAMHPLWEeyewptkdvddkdvpqAPSQSKFYVNPYSGDMSLNFPMQEQHCLGGILADEMGLGKTIQMLSLMHTHRse 500
                 9********999987776655166778889*************9988899********************************************99955 PP

                 .....HHTTTS---...................S-..............EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-------------- CS
                 .....xxxxxxxxx............xxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  81 .....akeekdkek............krkdtlagp..............tLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklla 148
                              +            +       p              tL+v+P+sll qW++e e+  ++++l++  y g+ k++   +++ ++  +
  CCE27493.1 501 vpreeP-------EpsnkiesivkqlV-------PsgksslvaweaphtTLVVAPMSLLAQWQSEAEKASKPGTLKIELYYGNDKTDDL-EELCRNPST 584
                 544430.......13334432222220.......245555555666666***************************9888887654444.899999999 PP

                 ---EEEE-HHHHHHHT................TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT-- CS
                 xxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 149 dydvvittYdvlsreaelq..........kkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfge 237
                 + d vit+Y ++ +e   +          k  + l +++ +rv+lDE+h +kn  +k++ a+ +L +++rw+ltGTPi n+ledl++L+ fL++ep+++
  CCE27493.1 585 APDLVITSYGIVLSEF--SsltstkngdrKLHKGLFSLKFFRVILDEAHHIKNRVAKTSRACYDLCAHHRWVLTGTPIVNKLEDLFSLVRFLGVEPWCN 681
                 999******9999555..44589999999999******************************************************************* PP

                 HHHHHHHTHHHHHHHHHHH.HHHHHTT-STTEE---GGGT......--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-H CS
                 xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 238 kqtfdkllqrpieaqaekg.rsrLlqllqrlmlrrakkdv......eknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksssks 329
                 + ++++ ++ p+ea +  +      ++lq+l++rr+k+           lPpk   i+ ++++k+er +Y  + +     a  + l+r++ a +  +  
  CCE27493.1 682 FSFWKSFITVPFEAGNFVRaLDVVQTVLQPLVMRRTKDMKtpdgqpLVPLPPKRIDIVDVEMTKQERDIYDYIFS----RAQRT-LSRNVEAGTVMK-A 774
                 *************666444045566799*********976685533336**********************3333....33333.333322222222.2 PP

                 HH-HHHHHHHHHHHHH---XX CS
                 xxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 330 kekilelllelrqacnhpqlv 350
                  + i+  +l+lrq c+hp lv
  CCE27493.1 775 FTTIFAQILRLRQSCCHPVLV 795
                 3679*************9875 PP

>> HIRAN  HIRAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   6.7e-22   8.5e-19       1      95 [.     166     259 ..     166     260 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 6.7e-22
                 EEEEEEEEECGGGCCT..---TTEEEEEEE-T..T-SS-TT-EEEEETTS-EEEEE-HHHHHHHHHHHHTTSSEEEEEESS-TTTEEEEEEEEEEEG CS
       HIRAN   1 lgsfevsvvglsyysgtgylkpgtevilerep..nnpadanavrvlnergfeiGrlprevakwlspLldsgfitfegvvvdapeknlkvgltvylsl 95 
                 +g+f v+++ ++   g + l++g+ v++er++    ++ + +vr++ne g eiGrl +e a+w+s L+d++++ feg++v+ape  l+ ++tvyl+l
  CCE27493.1 166 IGAFGVEGWVIR--GGLNVLRHGDVVKIERQNraFSRRADVIVRFCNEAGSEIGRLVNESANWISGLMDQNVCCFEGTCVYAPE-YLRSNDTVYLQL 259
                 799*********..99****************77679999********************************************.**********98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   5.9e-18   7.6e-15       5     111 .]     954    1065 ..     950    1065 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 5.9e-18
                  HHHHHH...HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C    5 allell...kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprn 96  
                  all ++    +e+ + k+++f+++++ l+ ++  l++ +i+ ++l+g+++q+ r ++l++f  + +++ +Li+ ++++ G++++++  V+++d++++
  CCE27493.1  954 ALLSEMrslRKEHPRMKSVVFSQFTSFLSLIEPALNRVNIQHLRLDGTMSQKARAAVLDKFAeSTKFTvLLISLRAGGVGLNLTSAGRVFMMDPWWS 1050
                  44444456688999************8844444466669**********************9678899888************************** PP

                  HHHHHHHHTTSSSTT CS
  Helicase_C   97 vtsyiqriGRtgRag 111 
                   +   q+i+R++R g
  CCE27493.1 1051 FAIEAQAIDRVHRLG 1065
                  *************86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   9.4e-12   1.2e-08       2     169 ..     397     659 ..     396     661 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 9.4e-12
                 -EE-HHHHHHHHHHT..........................................................TTS..EEEEEESTTSTHHHHHHHHHH CS
      ResIII   2 lelreyQeeaienlleklks....................................................krdk..rglikmaTGtGKTlvaaklie 46 
                 ++lr+yQ++ +  +++k k+                                                    ++++   g+++ + G GKT+ +++l+ 
  CCE27493.1 397 MTLRPYQKQSLHWMMAKEKDeranrepamhplweeyewptkdvddkdvpqapsqskfyvnpysgdmslnfpmQEQHclGGILADEMGLGKTIQMLSLMH 495
                 679999999999999888878999999999999999999999999999999999999999999999999997444456999****************** PP

                 HH-S..................................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..................-S CS
      ResIII  47 rllkkgkee.............................kflflvprkslleqtleefkkflseaykeigkkvsgdkkka...........kekdstnkk 105
                   +++ ++e                             ++ ++v   sll q+++e +k +++ + +i+  + +dk +                +t+  
  CCE27493.1 496 THRSEVPREepepsnkiesivkqlvpsgksslvaweapHTTLVVAPMSLLAQWQSEAEKASKPGTLKIELYYGNDKTDDleelcrnpstaPDLVITSYG 594
                 ****999999****************************888888889************9999998766666666666688889888888788899*** PP

                 EEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...TTTHHHHHT---SEEEEEESS- CS
      ResIII 106 ilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..kswreilekfkeavllglTATp 169
                 i++++ +sl++ ++ +++ ++ l + +f  +i DEaH+++    k+ r++ + + +  ++ lT+Tp
  CCE27493.1 595 IVLSEFSSLTSTKNGDRKLHKGLFSLKFFRVILDEAHHIKNRvaKTSRACYDLCAHHRWV-LTGTP 659
                 *************9999999999999**************98766777788887766666.58888 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   6.2   1.8e-07   0.00023       1      34 [.     859     892 ..     859     901 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.8e-07
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsLeek 34 
                 +Cp+C+d+  +  +vt C+H+ C+kC+l  ++++
  CCE27493.1 859 ECPLCFDEPMKDQTVTGCWHSACKKCLLDFMKHQ 892
                 6******965557***************998876 PP

>> CT_C_D  Carboxyltransferase domain, subdomain C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     1e-06    0.0013      42     118 ..     516     591 ..     498     594 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1e-06
                 ECEEEE-SSEEEEEESCCCCHHHHHH.HHHHHHHH.---------EEEEEEEESTTT-TTHHHHHHHHTS-HHHHHH CS
      CT_C_D  42 vvelvpayrsllvefdpealdaaellaalkalleeaeeeaaeesrlveipvcYdgevgpDLeevaelnglsveevir 118
                 v +lvp+ +s lv ++  +++       l a++++++e+a+++  +++i ++Y+++ + DLee+++   ++++ vi+
  CCE27493.1 516 VKQLVPSGKSSLVAWEAPHTTLVVAPMSLLAQWQSEAEKASKPG-TLKIELYYGNDKTDDLEELCRNPSTAPDLVIT 591
                 5699************8888887777777777777666666666.49*******************99999888886 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   8.4   1.6e-06     0.002       1      38 [.     860     901 ..     860     904 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.6e-06
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC...TSSB-.- CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks...rkkvk.C 38 
                 Cp+C++e+++ ++++ C Hs C+kC++  +k    r  v+ C
  CCE27493.1 860 CPLCFDEPMKDQTVTGCWHSACKKCLLDFMKHqtdRAVVPrC 901
                 **********999***************99975543333355 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   7.1e-06    0.0091      24      38 ..     102     116 ..     102     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.1e-06
       UBA_4  24 annWdLerAislyFd 38 
                 a++++LerA+++yFd
  CCE27493.1 102 ACDNNLERAVNTYFD 116
                 69************9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   6.9   5.2e-06    0.0067       2      46 ..     857     907 ..     856     911 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.2e-06
                 GSB-TTTSSS.BS-EEETTEEEEEE-HHHHHHHHH......TT-B-TTT--B CS
  zf-C3HC4_3   2 deeCviCler.prnvvllpCgHlvlCeeCaekllk......rkkkCpiCrrp 46 
                 d+eC++C+++  ++ ++  C H  +C++C+ +++k        ++C  Cr+ 
  CCE27493.1 857 DKECPLCFDEpMKDQTVTGCWHS-ACKKCLLDFMKhqtdraVVPRCFHCREI 907
                 689******9556799999****.*********99999988899******86 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   9.7   1.2e-05     0.015       1      44 []     858     905 ..     858     905 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
   zf-RING_2   1 deCpICleelssadsvlllpCgHvfhreClerwlrssst......CPlCr 44 
                 +eCp+C++e  ++++v+   C H+ +++Cl ++++++        C  Cr
  CCE27493.1 858 KECPLCFDEPMKDQTVT--GCWHSACKKCLLDFMKHQTDravvprCFHCR 905
                 59****98887756655..5************88777779*********9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013      0.16      30     135 ..     546     663 ..     470     665 .. 0.82
   2 ?   -2.9   0.0       6.1   7.8e+03      44      87 ..     740     784 ..     714     816 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
      AAA_22  30 deeakaee..erpevvfvtlpsstsskdllrellralglelka.............erlsseellealeqalraravielliiDEaqhlrseealeeLr 113
                  ++++ +e   +p++++++l  +++ +d l+el+r+     +              +  s++   ++l++ l + +    +i+DEa+h+ ++++ ++ r
  CCE27493.1 546 AQWQSEAEkaSKPGTLKIELYYGNDKTDDLEELCRNPSTAPDLvitsygivlsefsSLTSTKNGDRKLHKGLFSLKF-FRVILDEAHHI-KNRVAKTSR 642
                 33333333578999999999999999999999999988655559999999999997666666666888888888888.899********.9******** PP

      AAA_22 114 sllnlsrkgvqliLvGtpelrk 135
                  +++    + +++L Gtp ++k
  CCE27493.1 643 ACYD-LCAHHRWVLTGTPIVNK 663
                 ****.55567899999998776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.1
      AAA_22  44 fvtlpsstsskdllrellralglelka..erlsseell.ealeqalr 87 
                  v++++++  +d++  +++  ++ l++  e ++    + + ++q lr
  CCE27493.1 740 DVEMTKQE--RDIYDYIFSRAQRTLSRnvEAGTVMKAFtTIFAQILR 784
                 44444444..7777777777777777755333333333133333333 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   8.7   8.7e-05      0.11       1      26 [.     860     890 ..     860     904 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.7e-05
  zf-RING_UBOX   1 CpICl.elftdPlvlpCGHtFCreCl....w 26 
                   Cp C+ e+++d +v++C H+ C++Cl    +
    CCE27493.1 860 CPLCFdEPMKDQTVTGCWHSACKKCLldfmK 890
                   *****88**999668***********54431 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   8.3   0.00053      0.68       1      43 [.     859     905 ..     859     906 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00053
   zf-RING_5   1 hCnkCfeklskeekfyltsCgHifCekClkkll......ekeavCpiCr 43 
                 +C+ Cf++    ++  +t C H++C+kCl   +      +   +C  Cr
  CCE27493.1 859 ECPLCFDEP--MKDQTVTGCWHSACKKCLLDFMkhqtdrAVVPRCFHCR 905
                 599******..89999*************99997776665555666665 PP

>> zf-UBP_var  Variant UBP zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.5       0.4   5.2e+02      15      35 ..     242     262 ..     233     274 .. 0.70
   2 ?    8.4   0.4    0.0014       1.8      14      52 ..     859     894 ..     856     899 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.4
  zf-UBP_var  15 CvycFdtpesedGlyvcLkcF 35 
                 Cvy  +  +s+d +y  L+cF
  CCE27493.1 242 CVYAPEYLRSNDTVYLQLRCF 262
                 666666666666667777776 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0014
  zf-UBP_var  14 ECvycFdtpesedGlyvcLkcFlgfckkhaekhaektgh 52 
                 EC +cFd+p +++ +     c+ + ckk++ ++++ ++ 
  CCE27493.1 859 ECPLCFDEPMKDQTVT---GCWHSACKKCLLDFMKHQTD 894
                 9************998...789999*9999988877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1095 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.41
# Mc/sec: 7921.79
//
Query:       CCE27494.1  [L=365]
Description: probable ribosomal protein MRP17, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-50  172.0   0.0      2e-50  171.7   0.0    1.1  1  SQS_PSY   Squalene/phytoene synthase


Domain annotation for each model (and alignments):
>> SQS_PSY  Squalene/phytoene synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.7   0.0   1.1e-54     2e-50       3     263 .]      45     358 ..      43     358 .. 0.96

  Alignments for each domain:
  == domain 1  score: 171.7 bits;  conditional E-value: 1.1e-54
                 HH-HHHHHHHTTS-HHHHHHHHHHHHHHHHHT-.-----........------------..---------THHHHHHHHHHHT.........--HHHHH CS
     SQS_PSY   3 aasksfylaslllppelRdalgalYafcreaddlvDdvseplqararldwwrdavdavyaedklkpprepvlralaqlirtyk.........lpkelll 92 
                 +++++++l  +++p+e  d ++al+a++ e+ +l+  + +p++a +rl++w+++++a++   +++pp++p+ ++l ++++  +         + k+++ 
  CCE27494.1  45 SYDYEANLIQRFIPKEASDTYTALRALNIEITRLPHMAINPAIAAMRLEFWQQSINATF---AGRPPQQPICILLDDALKGLEsragpstkkSLKFWMS 140
                 6799*******************************************************...999***************999999************* PP

                 HHHHHTS--SS-..--SHHHHHHHHHHHHHHHHHHHHHHH-S.S-HHHHHHHHHHHHHHHHHHHHHT---SH.................HHHTT..S-H CS
     SQS_PSY  93 eliegmeadleftryetlddLeeYcyrvagvVgelclrllgarrsdralaeaarrlGkalQltnilRdvpeD.................aergrvyLPa 174
                 +++++  + ++ ++++t  +Le+Y++++ +++++ +l+++++ +s  +++++a+++Gka++++ +lR +p+                   +++r++LP 
  CCE27494.1 141 RFVRTKGQYMDGRPFPTVSALEDYAENTNSTLMYATLASFPL-QSM-HVDHLASHIGKACGIISVLRGIPVLatsghnirkqrhyllpaSRERRLLLPL 237
                 ******************************************.777.79***************************************888899***** PP

                 HHHHHHT--HHHHHHT-.-SHH.HHHHHHHHHHHHHHHHHHHHHTGGG...........................S.-HHHHHHHHHHHHHHHHHHHHH CS
     SQS_PSY 175 dvlkefgvseedllrkgvrsae.lrallrrlaerArelldearellkq...........................lpdrrarpalllavalyraileri 245
                 d+++e+g++ee+++r g ++a+ l +++++la+rA++++++ar+++++                            +++r+++ +ll++++++ +le +
  CCE27494.1 238 DLMAEEGITEEEVFRVG-PDAHgLTHAVFKLATRAHDHIHTARQMMNRllageapghafehgeeaehrhpedndtAEEIRRGFKVLLEAVPAMSYLELL 335
                 *****************.99999***************************************************9668899999*************** PP

                 HHTTT-.T...TT.------HHH CS
     SQS_PSY 246 eaadyd.v...ls.rrvklsllr 263
                 ++ad++ +   l  ++++l++++
  CCE27494.1 336 QKADFNpFevrLGgWKLPLKMWQ 358
                 ******99977557999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2869.75
//
Query:       CCE27495.1  [L=117]
Description: probable ribosomal protein MRP17, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-23   80.4   0.0      1e-22   80.2   0.0    1.1  1  Ribosomal_S6  Ribosomal protein S6


Domain annotation for each model (and alignments):
>> Ribosomal_S6  Ribosomal protein S6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   5.7e-27     1e-22       2      90 .]       3      94 ..       2      94 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 5.7e-27
                  EEEEEEE-TTS-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEEEEETTE....EEEEEEEEEEEESCCHHHHHHHHHHCSTTEEEEEEEE CS
  Ribosomal_S6  2 YElvfilrpelseeevkelvekvgklilenggvvrkveswGkrkLaypikkk....teGyyvlmnfdaspevikelertlrldervlRylivk 90
                  YEl+ i+rp +  +ev+e+v + g  il+n+gv+r + +wG   L++pi+ +    t+G+y++m++d+s+++ +el+ tl+l++r++R+  vk
    CCE27495.1  3 YELIGIVRPGNL-SEVREIVHTAGMHILRNEGVIRGLANWGVFALPKPISVYqmrhTHGHYFVMRYDTSAKIHQELRATLKLEPRMIRTAHVK 94
                  *********976.59***********************************777777*********************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 883.94
//
Query:       CCE27496.1  [L=278]
Description: probable SCRO protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-33  115.7   4.7    1.6e-33  115.7   4.7    1.6  2  Cullin_binding  Cullin binding
    1.1e-10   41.2   0.0    2.2e-10   40.2   0.0    1.5  1  UBA_4           UBA-like domain


Domain annotation for each model (and alignments):
>> Cullin_binding  Cullin binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.73   6.6e+03      33      51 ..      74      92 ..      56     104 .. 0.61
   2 !  115.7   4.7   1.7e-37   1.6e-33       4     120 .]     139     257 ..     136     257 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.73
  Cullin_binding 33 egqksldletaielwklll 51
                    +++ +++le  +++++  l
      CCE27496.1 74 DDKDKMELESTMSYLDSKL 92
                    3445677777777766555 PP

  == domain 2  score: 115.7 bits;  conditional E-value: 1.7e-37
  Cullin_binding   4 kkleklrkel.sdkekfkkvYeftFelakeegqksldletaielwklllkek...eatkkeelleqwieFleeekkekkaiskDtWnqlleFakk 94 
                     +++++l+++l ++++ fkkvY+++F +++e++qk+l+le+a+ +w +l++     +++k+ ++l+ w++Fl+e+  ++++++kD+Wn++leFa+k
      CCE27496.1 139 AHIRHLSSTLsKTPALFKKVYRYAFIAGREADQKALSLENATVYWGMLFSPPgmvWKSKNYDWLHLWKTFLNEK--WTRSVNKDMWNMTLEFASK 231
                     6899999999666699*********************************765555337888**********666..99***************** PP

  Cullin_binding  95 vkededlskYdeegAWPvliDeFvey 120
                      ++de+ls+++e+gAWP++iD+Fv++
      CCE27496.1 232 SMADESLSFWNEDGAWPSVIDDFVAW 257
                     ************************99 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   2.4e-14   2.2e-10       2      42 ..      11      51 ..      10      52 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2.4e-14
       UBA_4  2 eliaqFqaiTGadeekArqlLeannWdLerAislyFdsgea 42
                +l++qF+a+TG+++ +A ++L++++  ++ A+++++ s ea
  CCE27496.1 11 ALVSQFVALTGISDRQASRYLKSAGYKIDEAVDAFYSSSEA 51
                79**********************************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2154.57
//
Query:       CCE27497.1  [L=863]
Description: related to S-M checkpoint control protein rad4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-42  140.9   0.0    2.1e-18   66.0   0.0    4.2  4  PTCB-BRCT       twin BRCT domain
      3e-32  110.8   0.0    1.3e-11   44.7   0.0    4.4  4  BRCT            BRCA1 C Terminus (BRCT) domain
    6.6e-12   45.7   0.0     0.0072   16.7   0.0    5.1  5  BRCT_2          BRCT domain, a BRCA1 C-terminus domain
    3.3e-08   33.7   0.0      0.016   15.5   0.0    3.3  3  LIG3_BRCT       DNA ligase 3 BRCT domain
  ------ inclusion threshold ------
      0.037   13.0   2.1      0.071   12.1   2.1    1.4  1  Asparaginase_2  Asparaginase
      0.074   13.1   0.4       0.31   11.1   0.0    2.2  3  BRCT_3          BRCA1 C Terminus (BRCT) domain
        1.2    9.7   9.0        8.8    6.9   0.5    2.8  2  K_channel_TID   Potassium channel Kv1.4 tandem inactivation d


Domain annotation for each model (and alignments):
>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   7.8e-10     2e-06       2      63 .]      24      87 ..      23      87 .. 0.92
   2 !   66.0   0.0   8.3e-22   2.1e-18       1      63 []     136     197 ..     136     197 .. 0.96
   3 ?    0.1   0.0      0.32   8.2e+02       5      31 ..     325     351 ..     321     354 .. 0.86
   4 !   41.5   0.0   3.7e-14   9.6e-11       1      63 []     430     495 ..     430     495 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 7.8e-10
                EEEEECB-TTCHHHHHHHHHHTT-EEESSEETT-SEEEECSS-CHHHHH.HHHCT.-EEE-CHH CS
   PTCB-BRCT  2 vicvtgysgddrkslqklieamGaeyskdltksvTHLicksgeGekyek.Akkwg.ipvVsveW 63
                v+c t + +d+r+++   +e++G+  + dlt +vTHLi+      ky++ A+++  i+ + + W
  CCE27497.1 24 VACCTSIPPDQRTDIAARVEELGGLHKYDLTPDVTHLIVGAYDTPKYRHvARERPdIKAMDAAW 87
                68*********************************************86588887788877777 PP

  == domain 2  score: 66.0 bits;  conditional E-value: 8.3e-22
                 -EEEEECB-TTCHHHHHHHHHHTT-EEESSEETT-SEEEECSS-CHHHHHHHHCT-EEE-CHH CS
   PTCB-BRCT   1 lvicvtgysgddrkslqklieamGaeyskdltksvTHLicksgeGekyekAkkwgipvVsveW 63 
                 l ic+tg+  ++r+++   i+a+G+ y++dlt+++THLi+ ++eG+ky +Ak+w + +V+++W
  CCE27497.1 136 LLICLTGFG-EQREDIASRIKANGGRYTGDLTRRCTHLIVDKPEGKKYAAAKSWEVYTVTLDW 197
                 579*****5.679************************************************** PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.32
                 EECB-TTCHHHHHHHHHHTT-EEESSE CS
   PTCB-BRCT   5 vtgysgddrkslqklieamGaeyskdl 31 
                 + g+++++ + l+++i  +G++++  l
  CCE27497.1 325 IHGFNDKRHTVLEDTIITLGGSVVSSL 351
                 56899999999***********99877 PP

  == domain 4  score: 41.5 bits;  conditional E-value: 3.7e-14
                 -EEEEECB-TTCHHHHHHHHHHTT-EEESSEETT-SEEEE...CSS-CHHHHHHHHCT-EEE-CHH CS
   PTCB-BRCT   1 lvicvtgysgddrkslqklieamGaeyskdltksvTHLic...ksgeGekyekAkkwgipvVsveW 63 
                 lv+c   ++g d++++ + ++++Ga++ +++++++  L+c     ++ ek ++A +wg+p+Vs++W
  CCE27497.1 430 LVVCSAAFTGLDLNQIARSTSQLGAKFEEEFRRTTSVLVCrslSAMRKEKLKYAIQWGVPIVSADW 495
                 689*************************************65556789****************** PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.5e-07   0.00063       5      77 ..      19      90 ..      16      92 .. 0.88
   2 !   44.7   0.0   5.2e-15   1.3e-11      12      78 ..     139     201 ..     132     202 .. 0.92
   3 !   11.8   0.0   9.6e-05      0.25       2      79 .]     314     402 ..     313     402 .. 0.93
   4 !   28.9   0.0   4.3e-10   1.1e-06       6      79 .]     427     500 ..     424     500 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.5e-07
                TTTTEEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHH CS
        BRCT  5 lfhgckfvitgvldnftrdeleelikehGGkvttevskktthlvvgepesrslkylealklnipivheewlld 77
                +++g + ++ ++    +r+++   ++e+GG    ++++++thl+vg +++ + ++ +  +  i+ ++  w+ d
  CCE27497.1 19 PLRGTVACC-TSIPPDQRTDIAARVEELGGLHKYDLTPDVTHLIVGAYDTPKYRHVARERPDIKAMDAAWIED 90
                789999999.**************************************7777777777778888888888877 PP

  == domain 2  score: 44.7 bits;  conditional E-value: 5.2e-15
                 EEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHH CS
        BRCT  12 vitgvldnftrdeleelikehGGkvttevskktthlvvgepesrslkylealklnipivheewlldc 78 
                 ++  +  +++r+++ + ik +GG++t+++++++thl+v++p  +++ky +a+++ + +v+ +wl + 
  CCE27497.1 139 CL--TGFGEQREDIASRIKANGGRYTGDLTRRCTHLIVDKP--EGKKYAAAKSWEVYTVTLDWLDQT 201
                 44..88899********************************..*********************875 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 9.6e-05
                 TTTTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEE............ESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT   2 kellfhgckfvitgvldnftrdeleelikehGGkv............ttevskktthlvvgepesrslkylealklnipivheewlldci 79 
                 +e ++  c+f i  ++++   + le++i  +GG+v            ++ +s++   ++v   +s+ + +   ++  ++iv+e +l  c+
  CCE27497.1 314 NEGILARCIFGI-HGFNDKRHTVLEDTIITLGGSVvsslreiamratQPGQSQQSHRFLVVPQISEASSHPNLPSDDVEIVTEFFLERCL 402
                 6789999*****.99999999999***********************99999999999999999**********************9997 PP

  == domain 4  score: 28.9 bits;  conditional E-value: 4.3e-10
                 TTTEEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSS.HSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT   6 fhgckfvitgvldnftrdeleelikehGGkvttevskktthlvvgep.esrslkylealklnipivheewlldci 79 
                 f++++++    +++ + +++ +    +G+k+ +e+ ++t+ lv+ +    r++k++ a+++++piv+ +wl++ci
  CCE27497.1 427 FSKLVVCS-AAFTGLDLNQIARSTSQLGAKFEEEFRRTTSVLVCRSLsAMRKEKLKYAIQWGVPIVSADWLWECI 500
                 67777777.889999999****************************9867889*********************8 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.012        30      17      71 ..      31      90 ..      26      92 .. 0.91
   2 !   16.7   0.0   2.8e-06    0.0072      19      82 ..     145     211 ..     140     213 .. 0.90
   3 !    6.7   0.0    0.0038       9.8      20      81 ..     332     410 ..     316     414 .. 0.78
   4 !    9.3   0.0   0.00057       1.5      30      84 ..     451     511 ..     438     512 .. 0.74
   5 ?   -0.1   0.0      0.49   1.3e+03      21      42 ..     719     740 ..     712     767 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.012
      BRCT_2 17 pspsreklkklIeknGGevvetitsavyiviaesneee.....laekrkrrvvspkyIkd 71
                p ++r ++++ +e+ GG  + + t++v+++i+   ++      ++e+++ ++ ++ +I+d
  CCE27497.1 31 PPDQRTDIAARVEELGGLHKYDLTPDVTHLIVGAYDTPkyrhvARERPDIKAMDAAWIED 90
                55789999********************9999988887899*99**************98 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.8e-06
      BRCT_2  19 psreklkklIeknGGevvetitsavyiviaesneee...laekrkrrvvspkyIkdCikkgkllple 82 
                 ++re++++ I++nGG+ + + t++ +++i+ + e +   +a++ +  +v+ ++++  i++g +l+  
  CCE27497.1 145 EQREDIASRIKANGGRYTGDLTRRCTHLIVDKPEGKkyaAAKSWEVYTVTLDWLDQTIERGMILEET 211
                 67999*******************999999999988998888899999*************999876 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0038
      BRCT_2  20 sreklkklIeknGGevveti.............tsavyiviaesneee....laekrkrrvvspkyIkdCikkgkllpl 81 
                     l++ I++ GG vv++              ++++ ++++++ +e        +++ ++v+  +++ C+++++ + +
  CCE27497.1 332 RHTVLEDTIITLGGSVVSSLreiamratqpgqsQQSHRFLVVPQISEAsshpNLPSDDVEIVTEFFLERCLHSKQFIHP 410
                 5567999*********9999888888888887744456666666655578889999999***********999988765 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00057
      BRCT_2  30 knGGevvetitsavyiviaesneee......laekrkrrvvspkyIkdCikkgkllpleny 84 
                 + G +++e+ ++++ ++++ s +         a + + ++vs++++ +Ci+ g  +p++n+
  CCE27497.1 451 QLGAKFEEEFRRTTSVLVCRSLSAMrkeklkYAIQWGVPIVSADWLWECISTGFNVPIDNF 511
                 56666666666665555555555446677777888899***************99999987 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.49
      BRCT_2  21 reklkklIeknGGevvetitsa 42 
                  +kl +lI+   G+v+++++s+
  CCE27497.1 719 SSKLSDLIQVTAGTVSSDSNSS 740
                 5799***********9999876 PP

>> LIG3_BRCT  DNA ligase 3 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       0.2     5e+02      40      74 ..      54      90 ..      46      93 .. 0.81
   2 !   15.5   0.0   6.4e-06     0.016      28      79 ..     155     205 ..     145     207 .. 0.85
   3 !   12.7   0.0   4.6e-05      0.12      39      78 ..     459     502 ..     453     504 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.2
   LIG3_BRCT 40 ekeaTHvvvskke..eskkekeksknakaVtaewiwe 74
                + ++TH +v   +  + ++ +++ ++ ka  a wi +
  CCE27497.1 54 TPDVTHLIVGAYDtpKYRHVARERPDIKAMDAAWIED 90
                5689**9998766788899999999999999999986 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 6.4e-06
   LIG3_BRCT  28 iAydGdlvkeekekeaTHvvvskkeeskkekeksknakaVtaewiwesIkkr 79 
                  A++G  ++ + +  +TH +v+k+e +k  ++ks ++  Vt +w++++I+++
  CCE27497.1 155 KANGG-RYTGDLTRRCTHLIVDKPEGKKYAAAKSWEVYTVTLDWLDQTIERG 205
                 57777.455578889*********99999999*****************875 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 4.6e-05
   LIG3_BRCT  39 kekeaTHvvvskke....eskkekeksknakaVtaewiwesIkk 78 
                 +    T v+v+ +     ++k + + + ++  V+a+w+we+I +
  CCE27497.1 459 EFRRTTSVLVCRSLsamrKEKLKYAIQWGVPIVSADWLWECIST 502
                 55667778877444666677778889999*************76 PP

>> Asparaginase_2  Asparaginase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.1   2.8e-05     0.071     136     202 ..     691     757 ..     669     848 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.8e-05
                     GGG--HHHHHHHHHHHHCCCHS..B-S-BS-TTTTT---EEEEEE-TTS-EEEEEEE--STTB-TTE CS
  Asparaginase_2 136 esllteerlkelekakkekaekkeaknvsekelkaklgTvGaValDsegnlAaaTSTgGltnklvGR 202
                     ++++ e + ++ e+a +++++++e+   s+k ++    T G+V  Ds+  lA aTST   + +l GR
      CCE27497.1 691 QTAVDEDEVRRREEAARQQRKESERLALSSKLSDLIQVTAGTVSSDSNSSLAQATSTRPRRRQLLGR 757
                     44445555555555555555555555555554445555*******************9999999999 PP

>> BRCT_3  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         3   7.8e+03      64      86 ..     184     206 ..     178     211 .. 0.79
   2 ?   -2.6   0.0       2.2   5.7e+03      64      93 ..     384     413 ..     335     414 .. 0.65
   3 ?   11.1   0.0   0.00012      0.31      57      91 ..     475     509 ..     444     513 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3
      BRCT_3  64 kaeqlkipvvSteWviQsLIege 86 
                  a++ ++  v+ +W+ Q + +g 
  CCE27497.1 184 AAKSWEVYTVTLDWLDQTIERGM 206
                 5788889999****999886665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.2
      BRCT_3  64 kaeqlkipvvSteWviQsLIegevlkydsh 93 
                 +  + ++++v+   +  +L +++ +++++h
  CCE27497.1 384 NLPSDDVEIVTEFFLERCLHSKQFIHPSQH 413
                 445678888888888888888888888877 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00012
      BRCT_3  57 cpeevlkkaeqlkipvvSteWviQsLIegevlkyd 91 
                 + +e lk a q ++p+vS +W+ +++ +g  ++ d
  CCE27497.1 475 MRKEKLKYAIQWGVPIVSADWLWECISTGFNVPID 509
                 56778999******************998777665 PP

>> K_channel_TID  Potassium channel Kv1.4 tandem inactivation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.5    0.0035       8.8      39      63 ..     671     691 ..     666     720 .. 0.60
   2 ?    5.8   2.5    0.0074        19      23      67 ..     742     787 ..     726     793 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0035
  K_channel_TID  39 aaaaavaaaaaaae.GeGGggGGshk 63 
                    aaaaa+a     +e G G  gGG+ +
     CCE27497.1 671 AAAAAAA-----VEiGDGVVGGGDSQ 691
                    3333332.....22244444444433 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0074
  K_channel_TID  23 aqar.arererlahsraaaaaavaaaaaaaeGeGGggGGshkqhqs 67 
                    aqa   r r r    ra +  + a++aa+ +G G g+G  +  +  
     CCE27497.1 742 AQATsTRPRRRQLLGRAVSNVSNASSAASYNGDGTGSGPRQMTDSL 787
                    5554157777877899999999999999999999988877665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.38
# Mc/sec: 6728.69
//
Query:       CCE27498.1  [L=334]
Description: related to CHS7 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.1e-123  409.4  14.0   9.3e-123  409.2  14.0    1.0  1  Chs7      Chitin synthase export chaperone
     0.0016   18.7   0.4     0.0016   18.7   0.4    2.5  3  DUF3382   Domain of unknown function (DUF3382)


Domain annotation for each model (and alignments):
>> Chs7  Chitin synthase export chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  409.2  14.0    1e-126  9.3e-123       1     286 [.       3     286 ..       3     287 .. 0.99

  Alignments for each domain:
  == domain 1  score: 409.2 bits;  conditional E-value: 1e-126
        Chs7   1 qfgdFdsiCrktalplCnllksskseteakegiepeCyargielantiifnlgsilihivalivtlililrvrskktAvGRkEillflllyllleilel 99 
                 +fgdF+siC++++lplC+ ++++    ++++giep+Cyar+i lant+if+ ++  +hival++t+++il+vrsk+tAvGRkEil f++ly+ll++++l
  CCE27498.1   3 GFGDFTSICENAPLPLCANVGPT-LAATNHVGIEPNCYARNIALANTVIFEGAASAMHIVALVMTIVMILHVRSKFTAVGRKEILSFFYLYMLLTFISL 100
                 59********************9.77899********************************************************************** PP

        Chs7 100 vvdggviplsskvypyfvavqiglisatlwiLllnglvgfqlleDGtplSllllrlsslvlfivtflialdtfkswtaelsstktiaLfvllyllnlvl 198
                 +vd+gv+p++s  +pyfv++q+gl sa++++Ll+ng+vgfql+eDGtplS++++r++s+v+fi++fl++l+tfk w a+l++t+t++Lfv+lyl+n++ 
  CCE27498.1 101 IVDAGVVPPASGPFPYFVSIQNGLSSALITCLLINGFVGFQLYEDGTPLSVWTMRICSMVAFIISFLVSLATFKGW-AGLRPTNTVGLFVVLYLVNAIE 198
                 ****************************************************************************.********************** PP

        Chs7 199 lvvyvvlqlilvlrvLeerwplgalllgvllfvigqvllyvlskkiCegvkhyidGlffetlcnllavmmvykfWdsiTeddlefsvg 286
                 l+vyv +q++lv r+L++rwplg++++gv++fv+gqv+ly++s+kiC++v+hy+dGlff+t+cnll vmmvyk+WdsiT++dlefsvg
  CCE27498.1 199 LFVYVGMQVLLVTRTLHDRWPLGDIAFGVFFFVAGQVILYAFSSKICTAVSHYLDGLFFATVCNLLGVMMVYKYWDSITREDLEFSVG 286
                 ***************************************************************************************8 PP

>> DUF3382  Domain of unknown function (DUF3382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       0.6   5.4e+03      41      49 ..      61      69 ..      52      79 .. 0.60
   2 !   18.7   0.4   1.8e-07    0.0016       3      57 ..     120     170 ..     119     186 .. 0.77
   3 ?   -0.7   0.4       0.2   1.8e+03      29      59 ..     204     241 ..     182     249 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.6
     DUF3382 41 vaiavavvf 49
                va+++ +v+
  CCE27498.1 61 VALVMTIVM 69
                333333333 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.8e-07
     DUF3382   3 LknAliaallalvlfvpilGlqleldgtrlvleprwglvaiavavvfvgqLlrpl 57 
                 + n l +al++ +l+  ++G+ql  dgt l +++   ++  + +v f+ ++l++l
  CCE27498.1 120 IQNGLSSALITCLLINGFVGFQLYEDGTPLSVWT--MRI--CSMVAFIISFLVSL 170
                 578999****************************..444..44444555555544 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.2
     DUF3382  29 gtrlvlep.....rw..glvaiavavvfvgqLlrplll 59 
                 g+++ l +     rw  g +a++v    +gq ++ +++
  CCE27498.1 204 GMQVLLVTrtlhdRWplGDIAFGVFFFVAGQVILYAFS 241
                 33433333334445511456777766667777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2233.73
//
Query:       CCE27499.1  [L=672]
Description: uncharacterized protein CPUR_00973 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-11   42.8   0.0    1.4e-10   41.8   0.0    1.6  1  Cyclin    Cyclin
     0.0001   22.1   0.2    0.00017   21.3   0.2    1.3  1  Cyclin_N  Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.6e-14   1.4e-10      61     161 .]     185     310 ..      96     310 .. 0.74

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.6e-14
                 -...........................-SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHHHHH-SS---H CS
      Cyclin  61 v...........................paisigsylsrlqkfgesaplvllgtliYldrivkrcvsealvvtsanihRllivallvatKflvDlsysn 132
                                             p+ + ++ + ++ + +++++ v   +l++++r+     + ++   + + +Rll val+   Kfl+D  y+n
  CCE27499.1 185 EsvddlkmaesirstkspsisqlpalarPHEQFQKWAHKVLSTTQVTQNVIFLALLFIYRLRL--STPQIKGRAGSEYRLLTVALMLGNKFLDDNTYTN 281
                 04444444444444444444444444449999999999999********9999*******988..999******************************* PP

                 HHHHHHHTS-HHHHHHHHHHHHHHTTT-- CS
      Cyclin 133 ekfakvggislkELnkLEidFlflvdFdl 161
                 + +a+v    ++E+  +E++Fl  + ++l
  CCE27499.1 282 KTWAEVSCFAVQEIHVMEVEFLSNMRYNL 310
                 **********************9998875 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2   1.9e-08   0.00017      33     126 ..     216     310 ..     190     311 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.9e-08
                 HHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS.---CC..CHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N  33 ilidwlvevaekfkltpetlflavnyldRflskk.svpkd..klqlvgatcLllAaKveeisppkledlvyitdeafteeeilemErliLetLnfdl 126
                 +  +w  +v + +++t++++fla+ ++ R+  +  +++ +     ++ +++L+l  K+ ++++ + + ++ +  + f  +ei  mE ++L+ + ++l
  CCE27499.1 216 QFQKWAHKVLSTTQVTQNVIFLALLFIYRLRLSTpQIKGRagSEYRLLTVALMLGNKFLDDNTYTNKTWAEV--SCFAVQEIHVMEVEFLSNMRYNL 310
                 577999***********************9774425555578999999**********************99..5699***************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4627.56
//
Query:       CCE27500.1  [L=297]
Description: uncharacterized protein CPUR_00974 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        3.3    7.7   6.1         12    5.9   6.1    2.0  1  DUF3915      Protein of unknown function (DUF3915)


Domain annotation for each model (and alignments):
>> DUF3915  Protein of unknown function (DUF3915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.1   0.00069        12      19      41 ..     100     122 ..      89     134 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00069
     DUF3915  19 ccdrdrerererederekerekk 41 
                 +  rdr+r+r+r+++r+++r+ +
  CCE27500.1 100 SWGRDRDRDRDRNRDRDRDRDTN 122
                 34566666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       990  (0.0552178); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2026.37
//
Query:       CCE27501.1  [L=1190]
Description: uncharacterized protein CPUR_00975 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-08   33.9   0.1    1.7e-07   31.7   0.1    2.0  1  AAA       ATPase family associated with various cellular acti
    5.8e-05   23.1   0.1     0.0014   18.6   0.0    2.7  3  Rad17     Rad17 P-loop domain
    0.00065   20.0   0.2     0.0061   16.8   0.1    2.6  3  AAA_22    AAA domain
      0.003   17.9   0.2      0.013   15.9   0.0    2.2  2  AAA_16    AAA ATPase domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   3.8e-11   1.7e-07       1     115 [.     598     759 ..     598     766 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 3.8e-11
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS..........................................................STTH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk..........................................................yvge 41 
                 ++l+Gp G+GKT+++ avakel++e++ei+  + +s                                                             g 
  CCE27501.1 598 IVLSGPHGCGKTAAVYAVAKELDFEVFEINPGSRRSGkdildrigdmtrnhlvqhhraqaapigagdssdmtagsesrpsqqqgimtsffkakkgKPGS 696
                 579***************************999994459**************************************9999999999999887773333 PP

                 HHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGS CS
         AAA  42 sekkirelfkeakeka..kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkl 115
                 ++k+ ++  k+  + +  k+s ++i+E+d l +++        +++  +L+ ++d+ ++      +++++n+++ l
  CCE27501.1 697 KAKSKQQSTKSTASPRgqKQSLILIEEADILYEED--------KQLWTTLMGMIDQSRR-----PFVITCNDESLL 759
                 33333333333222225556***********9888........7788888888887777.....688888887766 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.089     4e+02       7      43 ..     477     513 ..     472     518 .. 0.86
   2 !   18.6   0.0   3.1e-07    0.0014      31      83 ..     580     632 ..     575     652 .. 0.78
   3 ?   -2.2   0.0      0.75   3.4e+03     131     166 ..     714     749 ..     699     757 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.089
       Rad17   7 elWfekykPekaeelavhkkkieevkewlkadvLesr 43 
                   W +ky P  a ++         +++wl+a+ ++s 
  CCE27501.1 477 MAWSQKYAPVSAVQVLQRGTDAAYIRDWLEAMKVQSV 513
                 57************9999999999*****99988765 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 3.1e-07
       Rad17  31 vkewlkadvLesrkkr.iLLisGPsGCgkstvvkvLskelgiklrewlnpvslk 83 
                 v + +++++ e  k r  +++sGP GCgk+ +v  ++kel +++ e +np s +
  CCE27501.1 580 VARSINTKSKEGGKLRnTIVLSGPHGCGKTAAVYAVAKELDFEVFE-INPGSRR 632
                 566667777776665568899*********************9987.6776644 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.75
       Rad17 131 tdkklilvedlPnkfyrdsdalrevirkylrsseal 166
                  +++lil+e+    ++ d + +  ++    +s++++
  CCE27501.1 714 QKQSLILIEEADILYEEDKQLWTTLMGMIDQSRRPF 749
                 46799****999888888888888877777777774 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.4e-06    0.0061       6     112 ..     596     738 ..     592     754 .. 0.77
   2 ?   -2.1   0.0      0.98   4.4e+03      47      89 ..     877     919 ..     861     923 .. 0.84
   3 ?   -3.7   0.0         3   1.3e+04      74     100 ..    1070    1095 ..    1040    1115 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.4e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.................................. 70 
                 + +v+ G+ G+GKT  +  ++++l         + ev+++++ s  s kd+l ++   + + l                                    
  CCE27501.1 596 NTIVLSGPHGCGKTAAVYAVAKEL---------DFEVFEINPGSRRSGKDILDRIGDMTRNHLVQhhraqaapigagdssdmtagsesrpsqqqgimts 685
                 6799********************.........9*********************99999988888889999999999999999999999988888888 PP

      AAA_22  71 .......erlsseellealeqalrarav..ielliiDEaqhlr..seealeeL 112
                        +++s+    ++ ++   + +   ++l++i+Ea+ l    ++++++L
  CCE27501.1 686 ffkakkgKPGSKAKSKQQSTKSTASPRGqkQSLILIEEADILYeeDKQLWTTL 738
                 88877764444444444444444333336678899999998865336666665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.98
      AAA_22  47 lpsstsskdllrellralglelkaerlsseell.ealeqalrar 89 
                  +++++ +++l++l ++++++l + + +s+ l+ +ale+ ++++
  CCE27501.1 877 RSGLETEREVLQQLWNFWHVDLGD-WCRSQPLYmRALERVIHRA 919
                 556679999999999999999999.9999999999999999886 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3
      AAA_22   74 sseellealeqalraravielliiDEa 100 
                   ++++ ++le  + +r + +++++D a
  CCE27501.1 1070 PKSQVTSHLEPSVFDRTM-PVIVVDVA 1095
                  667788888888888888.99999955 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.8e-06     0.013      22     165 ..     591     746 ..     578     755 .. 0.57
   2 ?   -2.5   0.2       1.3   5.9e+03      82     128 ..     954    1009 ..     904    1030 .. 0.44

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.8e-06
      AAA_16  22 grp..elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqllde..........aesaeleawrekleeala. 106
                 g+   + ++lsG+ G+GK++ v +++++l  +   +++ +  + +s+   +  + ++  r++l++   ++          +               ++ 
  CCE27501.1 591 GGKlrNTIVLSGPHGCGKTAAVYAVAKELDFE---VFEINPGSRRSGKDILDrIGDMT-RNHLVQHHRAQaapigagdssD---------------MTa 670
                 44467899*******************99988...44444444444444433355555.5455555555522222222221...............222 PP

      AAA_16 107 ..................avpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlles.k 165
                                   a +  +g++a++  +  k+ +  ++r++++ ++++++++ + e++ ql  +L+   ++ +
  CCE27501.1 671 gsesrpsqqqgimtsffkAKKGKPGSKAKSKQQSTKSTA--SPRGQKQSLILIEEADILYEEDKQLWTTLMGMIDQsR 746
                 223333333333345555444444444455555555555..4444555788888888888888888777777766643 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
      AAA_16   82 lrqlldeaesaeleawrekleealaavpelagaea........srllellkrll.a 128 
                  +++ l e+ + +l++ +++ +e + ++++l +a++        +++  +lk+++ +
  CCE27501.1  954 FAEHLKEKLDPSLPETSTRAREDYIIGRNLLDAQEafshttnsQSISLALKSAArE 1009
                  22222222222222222222222222222222222244434444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 7849.30
//
Query:       CCE27502.1  [L=918]
Description: uncharacterized protein CPUR_00976 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-09   36.2   0.0    5.2e-09   35.2   0.0    1.6  1  Utp8      Utp8 family


Domain annotation for each model (and alignments):
>> Utp8  Utp8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   2.9e-13   5.2e-09       5     173 ..       8     182 ..       6     367 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 2.9e-13
        Utp8   5 sepfrlaeLpriasls..nlseqvvvlqvasenfsessnkidvgisgsiIsqYilkptPkLiwsyplpsttivsccdvlekeense....elwlvglse 97 
                   p+ la+Lpr  + +  ++  + v++q    + + +  ++ vg++g + s Y +  + +Li syp+p++  ++c +       ++    + +++  ++
  CCE27502.1   8 HRPYVLAALPRPLDHTdgRIVAREVYGQRYG-EKKRKRMELVVGVDGETASIYDIPAS-RLITSYPIPPQESFTCPPYSIRMRLANsqdvYRYTYIATK 104
                 6799999999988774124667777777777.677788899**************999.****************998765544444456777777778 PP

        Utp8  98 rkkeskLlliekekeeteddkteeetsseyevklkkkvvsikisskkk......qivvvlenGsielldfelklleslkssk 173
                  +k+++++l +    +  + + +++++s+ ++  +++v  i  ss+++       iv++ e+G++ +l+ e+  l+ ++ sk
  CCE27502.1 105 DSKSYRITLFK----DVVHPDGKTTSTSTSQIVQSSPVRCITSSSSTNlttrldDIVAICEDGQVVYLSAEDLALQWSAASK 182
                 8899*****73....3344455666666666666666666666666655555559***********9999887433333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.81
# Mc/sec: 3407.22
//
Query:       CCE27503.1  [L=690]
Description: uncharacterized protein CPUR_00977 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       898  (0.0500865); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 4643.52
//
Query:       CCE27504.1  [L=530]
Description: probable CDC40-cell division control protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-29   99.5   4.2    2.2e-06   28.3   0.0    6.9  7  WD40         WD domain, G-beta repeat
    1.5e-14   54.1   0.0    5.2e-06   26.7   0.0    3.8  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0041   15.8   0.1      0.015   14.0   0.0    1.8  2  Nup160       Nucleoporin Nup120/160
  ------ inclusion threshold ------
       0.32    9.9   1.1         15    4.4   0.1    3.3  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.2e-05     0.052       4      36 ..     231     265 ..     228     267 .. 0.77
   2 !   28.3   0.0   4.9e-10   2.2e-06       2      38 .]     273     310 ..     272     310 .. 0.95
   3 ?    2.0   0.0     0.098   4.4e+02      14      38 .]     327     354 ..     314     354 .. 0.61
   4 !   11.4   0.0    0.0001      0.46       4      38 .]     362     397 ..     359     397 .. 0.75
   5 ?   -0.6   0.0      0.67     3e+03      17      36 ..     419     438 ..     415     439 .. 0.71
   6 !   21.8   0.1   5.4e-08   0.00024       4      38 .]     450     487 ..     447     487 .. 0.87
   7 !   15.6   0.0   4.8e-06     0.022       9      38 .]     500     530 .]     491     530 .] 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
                 EEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEE CS
        WD40   4 lrtltGH.ssvtsla.fspdgawlasGsdDgtvri 36 
                 ++ ++ H   vt+l+ f+ +g++l+s+s D tvri
  CCE27504.1 231 IHAWKDHtMAVTALQfFPGSGHLLLSASADTTVRI 265
                 6777888555*****77777777789999*****9 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 4.9e-10
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++lr+++GH + +t+ +f+ +g+ ++s+s+D++ ++Wd
  CCE27504.1 273 ELLRSYSGHsKAITDACFNASGTQFLSASYDRKMKLWD 310
                 689******888*************************9 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.098
                 EEEEEETTSSE...EEEEETTSEEEEEE CS
        WD40  14 tslafspdgaw...lasGsdDgtvriWd 38 
                 + ++f+pd      +++G+ D+++  +d
  CCE27504.1 327 HVIKFNPDPEHmteFLAGMSDKKIVQFD 354
                 44668888888666457*6699998766 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.0001
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++++ H   v+ + f +  + +++ sdD+++r Wd
  CCE27504.1 362 VQEYDHHlAAVNTITFVDQYRRFITTSDDKSLRAWD 397
                 7789999988999985555555566788*******9 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 0.67
                 EEETTSSEEE..EEETTSEEEE CS
        WD40  17 afspdgawla..sGsdDgtvri 36 
                 a +p+g+++a  s s D+ + +
  CCE27504.1 419 APHPSGKYVAfqS-S-DNQILV 438
                 6799****86433.6.887765 PP

  == domain 6  score: 21.8 bits;  conditional E-value: 5.4e-08
                 EEEEESS.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ss...vtslafspdgawlasGsdDgtvriWd 38 
                  ++++GH +    + +l+ spdg++lasG+  g v +Wd
  CCE27504.1 450 KKSYRGHnNAglaI-GLDCSPDGQFLASGDSGGFVCFWD 487
                 579****6559999.9999**********66*******9 PP

  == domain 7  score: 15.6 bits;  conditional E-value: 4.8e-06
                 SSSSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   9 GHssvtslafspdgaw.lasGsdDgtvriWd 38 
                 G + +t+++++p  +  la+++ Dg +r Wd
  CCE27504.1 500 GTQAITCVKWHPQETSkLAAAGLDGEIRYWD 530
                 3356****999999997777788*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.7e-05     0.076      36      81 ..     236     282 ..     228     286 .. 0.77
   2 !   11.0   0.0   9.3e-05      0.42      36      85 ..     280     329 ..     275     334 .. 0.88
   3 !   26.7   0.0   1.2e-09   5.2e-06      10      90 ..     427     510 ..     421     512 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.7e-05
  ANAPC4_WD40  36 kedsevrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++   v++L++ p +g+lL  a +d++vr+ d++++k +  +  +++
   CCE27504.1 236 DHTMAVTALQFFPgSGHLLLSASADTTVRIRDVYHEKELLRSYSGHS 282
                  567789999976538*******************9887655544444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 9.3e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  ++++ +++ +++ +g+ +  a  d +++l d e+g ++++++++++ +v 
   CCE27504.1 280 GHSKAITDACFNASGTQFLSASYDRKMKLWDTETGSCISTFTTGKTPHVI 329
                  5678999************************************9985544 PP

  == domain 3  score: 26.7 bits;  conditional E-value: 1.2e-09
  ANAPC4_WD40  10 iAlatedgellvf......RlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +A+ ++d+++lvf      R n ++ + +  +++ +   +L  +pdg++La + s g v + d ++ k+ h+l+++++ a+tc++W 
   CCE27504.1 427 VAFQSSDNQILVFgandkfRQNRKKSYRG--HNNAGLAIGLDCSPDGQFLASGDSGGFVCFWDWKTCKMYHKLKAGTQ-AITCVKWH 510
                  67788888888852222227777888888..78888888*************************************99.6******7 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.3e-06     0.015     210     258 ..     278     322 ..     262     339 .. 0.75
   2 ?   -1.3   0.0      0.14   6.2e+02     225     248 ..     377     399 ..     334     419 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.3e-06
                 ---TT-ECEEEEET.....TTTEEEEEETT-EEEEEETTTTEEEEEEE- CS
      Nup160 210 ksgasvalsldvavavveigqtylfalsrdgkLrvWnlltgkclatidl 258
                 +sg s ++ +d+ +  +  g ++ +++s d+k+++W+++tg+c++t+++
  CCE27504.1 278 YSGHS-KAITDACFNAS--GTQF-LSASYDRKMKLWDTETGSCISTFTT 322
                 55555.33333333333..5555.57899*****************776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.14
                 ....TTTEEEEEETT-EEEEEETT CS
      Nup160 225 vveigqtylfalsrdgkLrvWnll 248
                 +v+ ++    + s d+ Lr+W+++
  CCE27504.1 377 FVD-QYRRFITTSDDKSLRAWDYN 399
                 444.56666677899999999975 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1    0.0033        15     185     215 ..     279     310 ..     258     319 .. 0.82
   2 ?    0.8   0.1     0.043   1.9e+02     195     218 ..     467     490 ..     441     519 .. 0.70
   3 ?    1.1   0.0     0.034   1.5e+02     189     214 ..     503     529 ..     488     530 .] 0.76

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0033
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffq 215
                 + hs  i++a f + Gt    as d ++k++ 
  CCE27504.1 279 SGHSkAITDACFNASGTQFLSASYDRKMKLWD 310
                 5677689******************9999986 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.043
    Ge1_WD40 195 fspdGtalatasedGevkffqvyl 218
                  spdG  la   + G+v f+    
  CCE27504.1 467 CSPDGQFLASGDSGGFVCFWDWKT 490
                 69*****************97433 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.034
    Ge1_WD40 189 liveaafspdGta.latasedGevkff 214
                  i++  + p  t+ la+a  dGe++++
  CCE27504.1 503 AITCVKWHPQETSkLAAAGLDGEIRYW 529
                 678888888776449***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3710.26
//
Query:       CCE27505.1  [L=91]
Description: probable LSM3-Sm-like (Lsm) protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-18   66.2   0.1    1.8e-18   66.0   0.1    1.1  1  LSM          LSM domain
  ------ inclusion threshold ------
       0.18   11.8   0.0       0.21   11.6   0.0    1.1  1  AalphaY_MDB  Mating type protein A alpha Y mating type depend


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.1     2e-22   1.8e-18       4      67 .]      19      87 ..      16      87 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 2e-22
                HHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET.....EEEEEEEEEEEGGGEEEEEE CS
         LSM  4 kklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk.....ekrklglvliRGnnivlisl 67
                + l+n+ v v+l+++rel+G+L+++D ++NlvL +veet+   +      +rk +++++RG+++vlis+
  CCE27505.1 19 RLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIFAVDddeeaVSRKSEMLFVRGDSVVLISP 87
                6789************************************99999999999999*************96 PP

>> AalphaY_MDB  Mating type protein A alpha Y mating type dependent binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.3e-05      0.21      44      86 ..      11      57 ..       5      76 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.3e-05
  AalphaY_MDB 44 lppnldfvrtrlqearl....ppkaikgtlsayesacarwkhdleea 86
                 +p  ld+vr  l+e  +      + +kg l ay+s c     ++ee+
   CCE27505.1 11 VPEPLDLVRLLLNEVVFvklrGDRELKGKLHAYDSHCNLVLGEVEET 57
                 78899*******9975411124689************9999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 703.37
//
Query:       CCE27506.1  [L=641]
Description: probable GTP-binding protein 1; G-protein 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-18   66.3   0.0    4.7e-18   65.4   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    1.3e-09   38.3   1.1    5.6e-09   36.3   0.5    2.4  2  GTP_EFTU_D2  Elongation factor Tu domain 2
    6.9e-06   26.3   0.0    2.1e-05   24.8   0.0    1.9  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
     0.0012   18.8   0.2        1.7    8.5   0.1    2.6  2  RsgA_GTPase  RsgA GTPase
      0.002   18.2   0.2     0.0072   16.4   0.2    2.0  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.048   13.7   0.2       0.17   11.9   0.1    2.1  2  Dynamin_N    Dynamin family
       0.14   11.9   0.3        4.7    7.0   0.1    3.0  3  PduV-EutP    Ethanolamine utilisation - propanediol utilisati


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   1.8e-21   4.7e-18       5     193 ..     196     417 ..     194     420 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 1.8e-21
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE......................TTCSSEEEEEEEESSSG CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle......................ketkkylinliDtPGHv 81 
                  i+++g vD+GK+++++ L++   ++ + +++      l ++k+E e g T ++    +                        + + + i++ D  GH+
  CCE27506.1 196 RIAVVGNVDAGKSSMLGVLVKGDLDDGRGKARV----NLFRHKHEIETGRTSSVGMEIMGfdsvgevitsdtpgrklswediGKRSAKVITFSDLAGHE 290
                 689*****************7666666533333....3888888888888877766665577****************9875599999*********** PP

                 GGHHHHHHH..HHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH................HHHHHHHH CS
    GTP_EFTU  82 dFskevirg..lrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrl.kaelkeiveevkqklsrk................eeklekyg 161
                 ++ +++  g   +  ++++l+v+a++G    ++e+l +al+++vp++v+i+K+D +  + l+e+++++ + + r+                        
  CCE27506.1 291 KYLRTTVFGllSSSPNYCLLMVAANNGLIGMSKEHLGIALALNVPVMVVITKIDICpPKILEETITQITKIM-RSpgarkvptfiknreecI------- 381
                 *********777899*****************************************8777888888888555.4457667777776654332....... PP

                 HTTT........TTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 162 ekge........kevpvvfgSalkgegvktllealvellp 193
                    +        +++pv+ +S ++ge+++ l++++ + lp
  CCE27506.1 382 ---NtatqfvshRICPVFQVSNVTGENLD-LVRTFLNILP 417
                 ...03333444479************999.7777777666 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.5   2.2e-12   5.6e-09       1      73 [.     442     512 ..     442     513 .. 0.94
   2 ?   -1.0   0.0      0.96   2.5e+03      43      69 ..     543     570 ..     531     574 .. 0.74

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.2e-12
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  Gtv+ g+v sG++++Gd v i+++ + +++ +t i+s+e+ + ++  a+ag+ a + ++  + +d +++G+++
   CCE27506.1 442 GTVVSGIVKSGVIHEGDSVLIGPD-SLGQFATTAIRSIERRRIRVPAAIAGQSASFALKKMKRKD-VRKGMVV 512
                  9********************884.4577799*********************************.*****97 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.96
                  EEESEEETTSEEEEEEEESSCCS.GSST CS
  GTP_EFTU_D2  43 ededeavaganaGvivaikgled.aiiv 69 
                  ++++ + + +++ + +ai++++   i++
   CCE27506.1 543 KKYQAMLHVGPVSQTCAIIDIDReLIRT 570
                  5566677888999999999999844455 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   8.1e-09   2.1e-05       3      69 ..     523     592 ..     521     609 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 8.1e-09
                  EEECCEEEEEEESSS..SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BS.....S-SSCCSTT-C CS
  GTP_EFTU_D3   3 kphtkfeAqvyilekerhtpitagYrpvlyirtadvtgkvveLlskldkktekvse.....kkpefvkpGdn 69 
                  k h++f A+v+il++   t i ++Y+++l++  ++ t+ ++++ ++l +  ++++      ++pe++ pGd+
   CCE27506.1 523 KVHREFVAEVLILSH--ATTIKKKYQAMLHVGPVSQTCAIIDIDRELIRTGDRATVafqfvQRPEYLAPGDR 592
                  889************..*************************977776544443222333455555555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1   0.00067       1.7      91     160 ..     187     265 ..     131     269 .. 0.66
   2 !    7.6   0.0    0.0013       3.3      39      78 ..     326     368 ..     308     397 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00067
                  HHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT......-----S--..------------SEEEEEETTTEEEE..SS-S CS
  RsgA_GTPase  91 eelkellkdktsvlvGqSGvGKStLinallpe......lelktgev..seklgrGkhTTtavellelaegglli..DtPG 160
                  ++++++++ ++ ++vG+  +GKS+++ +l+         +++++    +++ ++G+  +   e++ +++ g +i  DtPG
   CCE27506.1 187 SHVEDVIETRI-AVVGNVDAGKSSMLGVLVKGdlddgrGKARVNLFrhKHEIETGRTSSVGMEIMGFDSVGEVItsDTPG 265
                  45555666554.579**************997566666355555550055678999999999999999977665569999 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0013
                  HHHHHHTT-EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSE CS
  RsgA_GTPase  39 LvlaeekgiepvivlnKiDlleeee...eleelkeelealgye 78 
                  L +a + ++++++v++KiD++  +    +++++ + +++ g +
   CCE27506.1 326 LGIALALNVPVMVVITKIDICPPKIleeTITQITKIMRSPGAR 368
                  66778899*************9987444566666666666654 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   2.8e-06    0.0072       1      57 [.     196     281 ..     196     342 .. 0.50

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.8e-06
                 EEEEEESTTSSHHHHHHHHHT............S..TEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGC..............S CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg............e..kaivsdkpgtTrdinegrvklkg.keielvDtpGl..............i 57 
                 ++a+vG+  +GKS+++  l++            +  + + + + g T  +  + + ++   e++  DtpG               i
  CCE27506.1 196 RIAVVGNVDAGKSSMLGVLVKgdlddgrgkarvNlfRHKHEIETGRTSSVGMEIMGFDSvGEVITSDTPGRklswedigkrsakvI 281
                 69******************766666655443312223333333555555555555555567888888882223333222222221 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   2.9e+03      57      80 ..      12      35 ..       2     111 .. 0.59
   2 ?   11.9   0.1   6.7e-05      0.17       1      22 [.     197     218 ..     197     267 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
                EET-EB--CHHHHHHHHHHHHHHH CS
   Dynamin_N 57 ekekkledfsevreeieketekia 80
                ek+k ++ +s+++e++e++++   
  CCE27506.1 12 EKRKGESALSDFTEYVEQQQNLRF 35
                444444444444444444444433 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 6.7e-05
                 EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlged 22 
                 iavvG++ +GKSS+l  L++ d
  CCE27506.1 197 IAVVGNVDAGKSSMLGVLVKGD 218
                 89*************9998765 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.26   6.7e+02       3      21 ..     196     214 ..     194     224 .. 0.82
   2 ?    7.0   0.1    0.0018       4.7      84     126 ..     328     373 ..     309     390 .. 0.79
   3 ?    1.1   0.0      0.12   3.1e+02     119     142 ..     391     414 ..     373     415 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.26
   PduV-EutP   3 killiGkvgsGKttLtqal 21 
                 +i ++G+v++GK ++   l
  CCE27506.1 196 RIAVVGNVDAGKSSMLGVL 214
                 8999********9987665 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0018
   PduV-EutP  84 fasvfnkeviGiitkidlaed...eenieaveelLksaGaekifev 126
                 +a  +n +v+ +itkid++     ee i++  + ++s Ga+k+ + 
  CCE27506.1 328 IALALNVPVMVVITKIDICPPkilEETITQITKIMRSPGARKVPTF 373
                 5677899***********9743336899999999999999998544 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.12
   PduV-EutP 119 Gaekifevsavekegieellkyle 142
                  +  +f+vs+v+ e+++ ++++l+
  CCE27506.1 391 RICPVFQVSNVTGENLDLVRTFLN 414
                 45679************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4833.96
//
Query:       CCE27507.1  [L=1012]
Description: uncharacterized protein CPUR_00981 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-16   58.9   0.1    1.2e-14   54.9   0.0    2.8  2  Arrestin_C  Arrestin (or S-antigen), C-terminal domain
    9.2e-07   29.0   1.7     0.0096   16.0   0.0    2.7  3  Arrestin_N  Arrestin (or S-antigen), N-terminal domain


Domain annotation for each model (and alignments):
>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3      0.76   6.8e+03      55      92 ..     155     193 ..     125     229 .. 0.54
   2 !   54.9   0.0   1.3e-18   1.2e-14       1     132 [.     555     771 ..     555     773 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.76
                 SEEEEEEEEEE.EEE---.....B-TTEE.EEEEEEE.----B- CS
  Arrestin_C  55 snkkeknvvak.sdsvkv.....tsaakdkletevelqiPeelt 92 
                 +nkk k +++  +    +     +s ++++l t  +l +P  ++
  CCE27507.1 155 RNKKGKATSTAsH----LlgkliSSFSGRSLSTVESL-RPVAIP 193
                 2222222222212....12334567777777766666.663333 PP

  == domain 2  score: 54.9 bits;  conditional E-value: 1.3e-18
                 ----EEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEEESS....................SEEEEEEEEEEEEE---.......... CS
  Arrestin_C   1 wdgkvsleaslpkkgyvpGetipvtvkidndskkkvkkikvslvqhvdvcafnr..................snkkeknvvaksdsvkv.......... 71 
                 w++++++++++++k++++G++ip+ +k++++ k++++k+kv +++ ++++  ++                                 k+          
  CCE27507.1 555 WEDQLHYDIVISGKSFPIGSKIPIAFKLTPLAKVQLHKMKVYVTESIEYWTTDKrvtrkdpvrkillleksaG--------------KPlesncaasem 639
                 99**************************************************988887554444444444431..............224555555555 PP

                 ......................................................B-TTEE.EEEEEEE.--........--B--..---S---EEEEEE CS
  Arrestin_C  72 ......................................................tsaakdkletevelqiP........eeltp..ssarnvelikvsY 106
                                                                            +++e  +++q+P        ++l    ++  + ++++v +
  CCE27507.1 640 ntlsggelspegrrqaremailrrtreaalhglpaeplpeptsnllgdldlgleHMWGATEIE--ANVQLPtcqmmaknKDLRLhaDC--SWKNVNVYH 734
                 555677777777777777777777777777888888888888888888888876555555566..66677877777776444445577..9******** PP

                 EEEEEEEEE..........S.SEEEEEEEEEEEEEB- CS
  Arrestin_C 107 klkvkltls..........g.sggelslelPivlgsv 132
                 ++k++l++s          + +++e+s+++P++++++
  CCE27507.1 735 WIKIVLRISrldpedptgtKrRHFEISIDSPFTVLNC 771
                 *****************98579************987 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.3       1.2   1.1e+04     100     115 ..     252     267 ..     250     268 .. 0.91
   2 !   11.7   0.0   2.2e-05       0.2      12      49 ..     327     365 ..     318     413 .. 0.84
   3 !   16.0   0.0   1.1e-06    0.0096      73     141 ..     465     536 ..     423     540 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.2
                 --TTS--SECSGEEEE CS
  Arrestin_N 100 lPknlpsSfeGkaggv 115
                 +P+ +ps + ++a++v
  CCE27507.1 252 IPSAIPSAVSSSACNV 267
                 899***********98 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.2e-05
                 EETT.--EEEEEEE-CCCCTT.CEEEEEEEEEEEESSSS CS
  Arrestin_N  12 yhpg.etvdGkvlleteelkkarkvkielsgkartgwee 49 
                 +h g   + Gk  l+ ++++k+++++++l g+art+w e
  CCE27507.1 327 DHGGtALLRGKLQLNVTKNVKIKAIQLKLMGRARTEWPE 365
                 666666789****************************75 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 1.1e-06
                 SSSS.SSSSHHHHH....HHH-TTEEEEEE---TTS--SECSGEEEEEEEEEEEEECCC..E--C.CCEEEEEEE CS
  Arrestin_N  73 eksllkskkdsqek....LpkGehafpFsfelPknlpsSfeGkaggvrYevkvtldrpw..kidkkkkkvftVir 141
                 e+   ++++++q k    +  G++ ++F + + ++   +++ ++g+v++e+++ +dr+   k++ +  k+++V+r
  CCE27507.1 465 ES---GATSTTQAKgykvFYPGTYDYNFELPIDHHQLETIKLQYGSVKWELHASIDRAGafKPKLQGLKEVSVVR 536
                 33...3333333333334777*************************************95555555666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1012 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.24s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 7144.42
//
Query:       CCE27508.1  [L=610]
Description: uncharacterized protein CPUR_00982 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   13.5   0.0       0.29   12.1   0.0    1.8  1  TPR_14    Tetratricopeptide repeat
       0.78   10.3   4.0         70    4.1   0.0    4.6  4  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.2e-05      0.29      12      44 .]      37      69 ..      36      69 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.2e-05
      TPR_14 12 lalGdpdeAiallrralalaPddaeawlllaql 44
                +alG++d A++ ++++l+laP  ++ +++l++l
  CCE27508.1 37 WALGKLDHAVKSAEWILELAPRLPDGYIRLGDL 69
                89***************************9976 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.3     0.026   2.3e+02       1      32 [.     209     240 ..     200     247 .. 0.66
   2 ?   -0.0   0.0      0.15   1.3e+03      23      31 ..     267     275 ..     256     281 .. 0.73
   3 ?   -1.5   0.0      0.44   3.9e+03      17      30 ..     375     388 ..     372     392 .. 0.69
   4 ?    4.1   0.0    0.0078        70      18      32 ..     533     547 ..     526     552 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.026
                 SS--EEE--SS---E-S-HH...H-TT--EEE-.- CS
       LRR_4   1 pnLevLdLsnNqltdiplle...klpnLkeLdLsg 32 
                 pnLe+L L+   +++  l+    k ++L++++L +
  CCE27508.1 209 PNLEHLGLHL--ISKQTLPVhqnKWTQLRHVSL-S 240
                 5677776664..666666444434777777777.4 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.15
                 TT--EEE-. CS
       LRR_4  23 pnLkeLdLs 31 
                  +L++L+L 
  CCE27508.1 267 SSLEHLNLV 275
                 578888885 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.44
                 S-HHH-TT--EEE- CS
       LRR_4  17 plleklpnLkeLdL 30 
                   l +l +L+++ L
  CCE27508.1 375 RYLTSLHSLQHIFL 388
                 45666778887776 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.0078
                 -HHH-TT--EEE-.- CS
       LRR_4  18 lleklpnLkeLdLsg 32 
                 +l+ +pnL++L +++
  CCE27508.1 533 FLATFPNLRTLKINS 547
                 4667********954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4602.68
//
Query:       CCE27509.1  [L=421]
Description: related to DNA-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-09   35.5  12.2    0.00039   20.7   1.3    2.6  2  zf-C2H2       Zinc finger, C2H2 type
    1.9e-07   31.2   6.3    1.9e-07   31.2   6.3    2.9  3  zf-H2C2_2     Zinc-finger double domain
    0.00016   22.2  12.3       0.03   15.1   1.6    2.6  2  zf-C2H2_4     C2H2-type zinc finger
  ------ inclusion threshold ------
      0.017   15.4   4.5       0.13   12.5   0.4    2.5  2  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding
      0.081   13.6   1.3       0.26   12.0   1.4    1.7  2  zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
       0.11   12.7   1.7       0.21   11.8   1.7    1.5  1  C1_4          TFIIH C1-like domain
       0.22   11.2   5.1        2.8    7.6   0.2    2.5  2  zf_C2H2_ZHX   Zinc-fingers and homeoboxes C2H2 finger domain
       0.45   11.0   4.9        0.2   12.1   1.1    2.2  2  zf-met        Zinc-finger of C2H2 type
        4.8    7.4   5.5        6.5    7.0   0.2    2.2  2  DUF2256       Uncharacterized protein conserved in bacteria (
        8.9    6.2   8.2        3.9    7.3   0.7    2.5  2  zf-C2H2_11    zinc-finger C2H2-type


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   3.8   5.6e-07     0.001       1      23 []      49      71 ..      49      71 .. 0.97
   2 !   20.7   1.3   2.2e-07   0.00039       1      23 []      77     100 ..      77     100 .. 0.97

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.6e-07
                EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                ++C  C +sF r ++LkrH r+H
  CCE27509.1 49 HVCATCQRSFARLEHLKRHERSH 71
                79********************9 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 2.2e-07
                 EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                 ++Cp+C ++F r+++L rH+++ H
  CCE27509.1  77 FECPECARCFARRDLLLRHQQKlH 100
                 89*******************999 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3     0.022        39      11      25 ..      45      59 ..      42      60 .. 0.88
   2 !   31.2   6.3     1e-10   1.9e-07       1      25 [.      63      87 ..      63      88 .. 0.95
   3 ?   -1.4   0.1       2.2   3.9e+03       2      14 ..      92     105 ..      92     105 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.022
   zf-H2C2_2 11 gekpyeCplCdkaFk 25
                +++p+ C  C  +F+
  CCE27509.1 45 KPRPHVCATCQRSFA 59
                6899*********97 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 1e-10
   zf-H2C2_2  1 nLrrHirkHtgekpyeCplCdkaFk 25
                +L+rH r+Ht+ekp+eCp+C+  F+
  CCE27509.1 63 HLKRHERSHTKEKPFECPECARCFA 87
                79*******************9997 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.2
   zf-H2C2_2   2 LrrHirk.Htgekp 14 
                 L rH+ k H + +p
  CCE27509.1  92 LLRHQQKlHQSSTP 105
                 569*9876987765 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   3.4   0.00018      0.32       2      23 ..      50      71 ..      49      72 .. 0.94
   2 !   15.1   1.6   1.7e-05      0.03       1      24 []      77     100 ..      77     100 .. 0.96

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
   zf-C2H2_4  2 kCpiCgksFsskkaLlrHlkth 23
                 C  C++sF + ++L+rH ++h
  CCE27509.1 50 VCATCQRSFARLEHLKRHERSH 71
                7999*****************9 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.7e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkthH 24 
                 f+Cp C + F +++ LlrH ++ H
  CCE27509.1  77 FECPECARCFARRDLLLRHQQKLH 100
                 89******************9988 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   7.4e-05      0.13       2      24 ..      49      71 ..      48      73 .. 0.93
   2 ?    4.2   0.3     0.031        55       2      21 ..      77      96 ..      76     101 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.4e-05
                 CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHlkSK 24
                 + C +C++ F   + l+ H++S+
   CCE27509.1 49 HVCATCQRSFARLEHLKRHERSH 71
                 67********************6 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.031
                 CBBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHl 21
                 f+C++C++ F     l  H+
   CCE27509.1 77 FECPECARCFARRDLLLRHQ 96
                 9******9998888887775 PP

>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.19   3.3e+02      95     122 ..      42      69 ..       7      73 .. 0.74
   2 ?   12.0   1.4   0.00015      0.26       1      90 [.      51     134 ..      51     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.19
  zf-C2H2_3rep  95 nesgvrkfvcrfcGlkfdllpdlGrhhq 122
                   +++  r +vc  c   f  l  l rh +
    CCE27509.1  42 KTDKPRPHVCATCQRSFARLEHLKRHER 69 
                   5667788999999999999999999976 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00015
  zf-C2H2_3rep   1 caicldsftnkkvlethvqerhhvqfveqclllqcipcgshfgnaeelwlhvlsvhpsdfklskvaqkknlsasedssqklelsksasve 90 
                   ca c  sf+    l+ h  er h     + + ++c  c   f+  + l+ h + +h s+  +s++ ++++++++   sq+ ++s+ a v+
    CCE27509.1  51 CATCQRSFARLEHLKRH--ERSHT----KEKPFECPECARCFARRDLLLRHQQKLHQSSTPSSRTRNRRESASGATPSQNRRKSSVAGVS 134
                   88899999887777665..55554....346799******************************99999988888777877777776664 PP

>> C1_4  TFIIH C1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.7   0.00012      0.21       2      35 ..      51      86 ..      50     100 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
        C1_4  2 CygCqkkfpklakkkkdee..ltssryrCekCkndF 35
                C++Cq++f++l++ k +e+  + +  ++C++C + F
  CCE27509.1 51 CATCQRSFARLEHLKRHERshTKEKPFECPECARCF 86
                *********99887776664477789******9988 PP

>> zf_C2H2_ZHX  Zinc-fingers and homeoboxes C2H2 finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.1    0.0076        14       6      31 ..      50      74 ..      47      78 .. 0.85
   2 ?    7.6   0.2    0.0016       2.8       5      43 ..      77     115 ..      73     117 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0076
  zf_C2H2_ZHX  6 vCveCsfsakkfegLalHNarsHpge 31
                 vC+ C+ s  + e L+ H  rsH+ e
   CCE27509.1 50 VCATCQRSFARLEHLKRH-ERSHTKE 74
                 9*****************.5777755 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0016
  zf_C2H2_ZHX   5 FvCveCsfsakkfegLalHNarsHpgetnftlqvvKrdn 43 
                  F C eC     + + L  H  + H ++t  + + ++r++
   CCE27509.1  77 FECPECARCFARRDLLLRHQQKLHQSSTPSSRTRNRRES 115
                  89*************************999998888875 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.1   0.00011       0.2       2      23 ..      50      71 ..      49      72 .. 0.94
   2 ?   -0.6   0.1       1.1   1.9e+03       1      21 [.      77      97 ..      77      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
      zf-met  2 yCelCnvtfnsesqlksHlqGK 23
                 C  C+++f    +lk H +++
  CCE27509.1 50 VCATCQRSFARLEHLKRHERSH 71
                5*******************98 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
      zf-met  1 fyCelCnvtfnsesqlksHlq 21
                f+C+ C + f  +  l  H q
  CCE27509.1 77 FECPECARCFARRDLLLRHQQ 97
                78****999999999998865 PP

>> DUF2256  Uncharacterized protein conserved in bacteria (DUF2256)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0036       6.5       7      18 ..      48      59 ..      42      66 .. 0.83
   2 ?    2.5   0.9     0.092   1.7e+02       9      20 ..      78      89 ..      68      92 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0036
     DUF2256  7 sKiCavCgrpft 18
                  +Ca+C+r+f+
  CCE27509.1 48 PHVCATCQRSFA 59
                568*******96 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.092
     DUF2256  9 iCavCgrpftwR 20
                 C+ C r f+ R
  CCE27509.1 78 ECPECARCFARR 89
                5********977 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.5     0.096   1.7e+02       7      23 ..      51      67 ..      49      69 .. 0.91
   2 ?    7.3   0.7    0.0022       3.9       6      25 ..      78      97 ..      75     100 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.096
  zf-C2H2_11  7 CleCGlcftSqlsLsRH 23
                C  C + f+    L+RH
  CCE27509.1 51 CATCQRSFARLEHLKRH 67
                99*************** PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0022
  zf-C2H2_11  6 qCleCGlcftSqlsLsRHlf 25
                 C eC +cf+    L RH +
  CCE27509.1 78 ECPECARCFARRDLLLRHQQ 97
                59********9999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3177.04
//
Query:       CCE27510.1  [L=223]
Description: related to the plant PR-1 class of pathogen related proteins [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-17   63.6   5.4    8.5e-17   62.2   5.4    1.7  1  CAP       Cysteine-rich secretory protein family


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   5.4   4.7e-21   8.5e-17       1     126 []      63     175 ..      63     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 4.7e-21
                 HHHHHHHHHHTT----EE-HHHHHHHHHHHHHHHHH.T---S-GGG--HHHHHHTT-TEEEEEES--CCCHHHHHHTSHH..............HHHHH CS
         CAP   1 leahNeyRaaaglppLkwdatLekaAqdhardcaashsdsssspeggdllkyaenagkeniaaaseaaedavdsWysepgtynkgketegs.ighftnl 98 
                 l+ +N yR+a++++ ++w++tL++ A d+ +       + +    +g +++ + ++g       + +a++av++W+ e+  y++gk+     +ghft+l
  CCE27510.1  63 LNSTNVYRQAHNASEVAWNQTLADYATDYLASD-----SGCLFAHSGGPYGENLAEG-------YPNATAAVEAWAAEESKYDYGKAEFTHeTGHFTQL 149
                 6789************************99974.....4444444455555555555.......68889******************9999******** PP

                 T-SS--EEEEEEEEBTTS-E..EEEEEE CS
         CAP  99 lwpkstkvGcavatcgngsftfivvcny 126
                 +w+k+t vGca   cg+ +   ++vc+y
  CCE27510.1 150 VWKKTTAVGCARRVCGESGW--FLVCEY 175
                 ************88887743..7***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1858.86
//
Query:       CCE27511.1  [L=202]
Description: uncharacterized protein CPUR_00985 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1658.46
//
Query:       CCE27512.1  [L=1054]
Description: related to Na+/H+ antiporter CNH1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.8e-112  374.7  46.2   2.8e-110  369.7  46.2    2.5  1  Nha1_C          Alkali metal cation/H+ antiporter Nha1 C term
    5.3e-76  255.9  21.1    6.4e-76  255.6  21.1    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
  ------ inclusion threshold ------
      0.063   13.6   0.1       0.48   10.8   0.0    2.3  2  Colicin_E5      Colicin E5 ribonuclease domain
       0.12   12.4   5.4      0.069   13.3   1.0    2.5  2  YrhC            YrhC-like protein
          3    7.5   6.3        5.4    6.7   1.3    2.5  2  PRP4            pre-mRNA processing factor 4 (PRP4) like


Domain annotation for each model (and alignments):
>> Nha1_C  Alkali metal cation/H+ antiporter Nha1 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  369.7  46.2  7.8e-114  2.8e-110       1     465 []     458    1025 ..     458    1027 .. 0.80

  Alignments for each domain:
  == domain 1  score: 369.7 bits;  conditional E-value: 7.8e-114
      Nha1_C    1 WMnRLPrldsqsrSfSlrrvdt.sdtsedekkepefppgtlgppvrpaGgflRRqkeed.rskkksrsssererrqrekkkwddglglGgpisqsai 95  
                  WMnRLPr++sqsrS+   ++++ + + +d++kep +p+gtl+pp+     flRRq+++d +s+ +sr  s +++r+ ++kkwddg+g+Ggp+sqsai
  CCE27512.1  458 WMNRLPRISSQSRSM---ARTMsEASYDDDLKEPSVPAGTLAPPFN----FLRRQRDDDgNSRPGSRTPSVVSKRR-KSKKWDDGIGPGGPVSQSAI 546 
                  ***************...****555667789**********88887....*******666**********999998.77****************** PP

      Nha1_C   96 fpqrrseseeepessteeeeseeesepesessatsseseee.deseseesperkeekkeeeeppvevYqEGdkiIiEdeeGevlevedkpkeeeeer 191 
                  fp+r+s + ++p     e+e + ++++ ++s++   ++  e +++ + +s+ ++++++++++p++++Y+EG+++++E++eG+v+  e++p+  eee+
  CCE27512.1  547 FPNRQSLQADTP-----EKEFPPPTREATDSTTLGGDEGAEkSTECDGKSSGQQQQQQQDHPPHINIYDEGHQLVFENDEGDVIGMEPTPSAAEEEE 638 
                  *****8775553.....44444455555555544444444413444445557889999**************************6666666666653 PP

      Nha1_C  192 ekssk...............seksshsleslkrrlsevskeeekekrkekkkskrkhekarAYqfgntIIvEdEDGEVikrYkipnpkskeakkksr 273 
                  +k++                + +s++ l++l+r++se+ +++e ekrk+k+ks+r+he+arAYqfgntIIvEd DGEV+k+Y++p++k+      ++
  CCE27512.1  639 KKDQAegqnkqsktaegkteEATSGWRLGGLRRKVSEY-YSSELEKRKDKDKSERRHEPARAYQFGNTIIVEDKDGEVVKTYQLPSSKP------ES 728 
                  3222235556666899**99999***************.9*********************************************9999......89 PP

      Nha1_C  274 krsssvvskalsavGlkskekaae..............................................ksskkskaeeeeeeeddkkirftiggv 324 
                  ++ss++++ +ls++Gl+ +++ ++                                              ++s + +a e ++eeddkkirftigg 
  CCE27512.1  729 QESSDLIGASLSYLGLGTRRQGEKnaaaaaeegqagpessakqafrvgwagfgqrgeqskrktatqnqtqQASGSVQAGEGQDEEDDKKIRFTIGGI 825 
                  9***************998766669*****************************************999866677788888999************* PP

      Nha1_C  325 grrmtkedfirevqkldpktrkevvdqsdaskavkelakkd............................................rkltpapkerke 377 
                  grrmtkedfirevqkl++++r+evvd s+as+a+k++akkd                                                        
  CCE27512.1  826 GRRMTKEDFIREVQKLESSARNEVVDRSTASNALKSMAKKDlpadaasqlasssshslrkkrssspspsppptvavvpailehlgL----------- 911 
                  *****************************************888888888766666666553333333333333322222222220........... PP

      Nha1_C  378 asqaseseeseeseedeeeesseedsssdeeseeee............................................................. 413 
                                                     +                                                             
  CCE27512.1  912 -----------------------------------Knspggstagsssggngegssrtgefpsasvsptrsredtsepgepsrgrssekvpavaqge 973 
                  ...................................02222222222233444445556677777777777778888888888888888899****** PP

      Nha1_C  414 taaerrrr.laalessededseddgteegETaaERrRRlaALGelsa.deddee 465 
                  ta+errrr  aa ++++d     d  ++gET+aERrRR aALG++   +e+d++
  CCE27512.1  974 TAVERRRRrIAAVAEQHDAGALLD--DNGETPAERRRRQAALGMGGPaAEEDSD 1025
                  ****99986455555555555444..68****************9887666665 PP

>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.6  21.1   1.8e-79   6.4e-76       1     379 [.      16     434 ..      16     436 .. 0.96

  Alignments for each domain:
  == domain 1  score: 255.6 bits;  conditional E-value: 1.8e-79
                     XHHHHHHHHHHHH...HHHHTTSXHHHHHHHHHHHHTTTTTS..........HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHH CS
  Na_H_Exchanger   1 ivllillallvgl...larrlklpeivgliiaGlllGpsglglieps.....eedlevlselglilllFlaGleldlrelrknlksilllallgv 87 
                     i+l+++++l++++   + +r +++e +++ ++G+++Gp+  +li+p+     ++++ ++s+++l+++ F++G+el+  ++ k++ks++ l+++++
      CCE27512.1  16 IILGGFTSLFMLCssfIKERMYIGEATVATLCGVIFGPHAANLINPNswgntDIVTVEFSRIVLVVQCFAVGVELPKFYMEKHWKSVVFLLVPVM 110
                     688899999999998559***************************************************************************** PP

                     HHHHHHHHHHHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC....CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTX.XXXXTSSSTSX CS
  Na_H_Exchanger  88 litvvliGlllylllilgiplleallfgailsatdpvvvlailk...eegrvperlgtlllgesvlnDavavvllavllalak.eeaggetslll 178
                     ++ ++l++l++++ +i+ +++le+l+++a+++atdpv++++++    +++rvp++l+ ll +es++nD++a++++++ l l++  +++g++s+  
      CCE27512.1 111 TAGWLLTSLFVWW-MIPALDWLESLVIAACVTATDPVLASSVVGkgkFAKRVPKHLRDLLSAESGCNDGMAFPFIYLSLYLIQyNRDAGQVSYHF 204
                     ************8.8****************************9999*************************************99********* PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS....CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHH.HHHHHTTHHHH.HHHHHHH CS
  Na_H_Exchanger 179 llliflvvavgglllglvigwllrlitrft....dddrelevllvlllallaallaellgvsgilgaflaGlvls.eyefsnklsek.lesfreg 267
                     ++ ++l+++++g + g++ig+++r  ++++      dre+++++++++al++a+ +++lgv+++l+ f+aG+ +s +++f++k++e+ ++++++ 
      CCE27512.1 205 IVYVVLYECIFGAIYGFLIGYIARHGIKYAesrdMIDRESFLVFYFVVALFCAGSGSILGVDDLLVGFAAGVGFSnDGWFGEKTEEShVSNVIDL 299
                     *********************************************************************************************** PP

                     HHHHHHHHHHHHHSXHHHHHX...XHHHHHHHHHHHHHHHTHHHHHHHHHTTTX..SSXHHHHHHCC.CCSS.BHHHHHHHHHHHHHH...XHHH CS
  Na_H_Exchanger 268 lfnplfFvlvGlsldlkvlnn...hlsvlilvllilvaillgrilavflllrll..glslrealiig.fgglqrgavalalaalgpal...glla 353
                     l+n ++Fv++G+ ++++  nn   ++  ++lv+++++++l++ri+  + l++++   +++real++g fg++++ga+ +a++a+++++   +   
      CCE27512.1 300 LLNLAYFVYFGTIIPWEQYNNglfGMAAWRLVVIAIFVLLFRRIPIMMMLKPFIpdVKNWREALFAGhFGPIGVGAIFVAILARAELEhheP--- 391
                     *******************99*********************************977*******************************5551... PP

                     H................TT.SSTTTCSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger 354 r................el.yallivvvlftvlvqGlslkpll 379
                                       l ++++++ v+ ++l++G+s+++++
      CCE27512.1 392 VplgelppedapfykliYLvWPIVTFLVISSILIHGSSIAVFT 434
                     34555666699******888*******************9875 PP

>> Colicin_E5  Colicin E5 ribonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.68   2.4e+03      37      76 ..     588     626 ..     577     633 .. 0.73
   2 ?   10.8   0.0   0.00013      0.48      17      76 ..     663     717 ..     652     728 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.68
  Colicin_E5  37 ddkranktsDglrrndsAtvYgekdgkYvvvndrtgevvq 76 
                 d k+ +  +   +++ +  + +  +g+ +v ++ +g+v+ 
  CCE27512.1 588 DGKSSG-QQQQQQQDHPPHINIYDEGHQLVFENDEGDVIG 626
                 444444.45667788888888888899**********985 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00013
  Colicin_E5  17 GWteeevrdvvskgaktkssddkranktsDglrrndsAtvYgekdgkYvvvndrtgevvq 76 
                 GW    +r  vs+ + ++ ++ k     +   rr ++A +Y    g+ ++v+d++gevv+
  CCE27512.1 663 GWRLGGLRRKVSEYYSSELEKRKDK---DKSERRHEPARAYQF--GNTIIVEDKDGEVVK 717
                 6666666666666555444433333...456799******975..589**********97 PP

>> YrhC  YrhC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.33   1.2e+03      13      50 ..      74     110 ..      73     121 .. 0.74
   2 ?   13.3   1.0   1.9e-05     0.069      17      61 ..     300     343 ..     297     348 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.33
        YrhC  13 FafvLLalsaFLyiGlviPseaketlkksillgaivvf 50 
                 F+ + L +  F  +G+ +P++++e++ ks++++ + v+
  CCE27512.1  74 FSRIVLVVQCF-AVGVELPKFYMEKHWKSVVFLLVPVM 110
                 66677777666.79***********9999988876654 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.9e-05
        YrhC  17 LLalsaFLyiGlviPseaketlkksillgaivvfLllaflflrrs 61 
                 LL l  F y+G++iP e++++     + +  +v++++ +l++rr+
  CCE27512.1 300 LLNLAYFVYFGTIIPWEQYNNGL-FGMAAWRLVVIAIFVLLFRRI 343
                 99**************7777665.555666666666666666665 PP

>> PRP4  pre-mRNA processing factor 4 (PRP4) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3     0.024        87      16      25 ..     972     981 ..     967     981 .. 0.96
   2 ?    6.7   1.3    0.0015       5.4      16      25 ..    1000    1009 ..     999    1009 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.024
        PRP4  16 GEthadRreR 25 
                 GEt  +Rr+R
  CCE27512.1 972 GETAVERRRR 981
                 9********9 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0015
        PRP4   16 GEthadRreR 25  
                  GEt+a+Rr+R
  CCE27512.1 1000 GETPAERRRR 1009
                  9********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1054 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1266  (0.0706119); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.42
# Mc/sec: 7454.70
//
Query:       CCE27513.1  [L=257]
Description: uncharacterized protein CPUR_00987 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-05   24.5   0.0    2.5e-05   24.2   0.0    1.2  1  CbtA         Probable cobalt transporter subunit (CbtA)
     0.0009   17.5   4.9     0.0011   17.2   4.9    1.0  1  AF-4         AF-4 proto-oncoprotein
  ------ inclusion threshold ------
       0.13   11.0   2.8       0.16   10.7   2.8    1.1  1  NPR3         Nitrogen Permease regulator of amino acid transp
       0.58    8.7   8.8       0.75    8.3   8.8    1.0  1  Utp14        Utp14 protein
       0.87    7.8   6.7        1.1    7.4   6.7    1.1  1  CDC45        CDC45-like protein
       0.88    7.8   3.8          1    7.5   3.8    1.0  1  RAP1         Rhoptry-associated protein 1 (RAP-1)
        1.3    7.6  11.0        1.7    7.2  11.0    1.0  1  TFIIF_alpha  Transcription initiation factor IIF, alpha subun
        6.5    6.4   6.5         11    5.7   3.7    2.2  2  FAM176       FAM176 family


Domain annotation for each model (and alignments):
>> CbtA  Probable cobalt transporter subunit (CbtA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.1e-08   2.5e-05      55     169 ..      91     213 ..      38     246 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.1e-08
        CbtA  55 h.......aeaeepelvsrgvqrtlgtvlanvltgvalglllaavfallegrlg.klsaralalllalagflavvlvPflklPpepPgvgaadtieaRq 145
                 +       + ++++ l+s  ++r l  +l +v +++    l ++v   + ++++ ++ a ++  +++++ fl  +l Pf    p +Pg ++      Rq
  CCE27513.1  91 NraknsksNSDNDEPLISPRAERILDAALWTVTIAMVHFTLDVLVHNQYAREMEwSAMAVRTCRAWGVFLFLFYFLHPFTPNAPLVPGLPSRLQHPLRQ 189
                 0222233334445557999999998877777777766555544444444333320344888999*********************************** PP

        CbtA 146 alylatvalsavalalavflarrl 169
                 al++at ++++  l+ +  ++  l
  CCE27513.1 190 ALFFATSVVAGCSLIHVTNTYGYL 213
                 **********99999888777776 PP

>> AF-4  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   4.9   4.8e-07    0.0011     452     508 ..      46     105 ..      31     139 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.8e-07
        AF-4 452 ssapqstpesvesahsssaeSeSsSeSeSSSeSDSesEs...sssdseanepprtatpep 508
                  + + s  +s +s h  +++SeS   S+S S+SDS+s+      s+ + n ++++   ep
  CCE27513.1  46 RERELSATKSGKSTHDGGDDSESDTASNSDSDSDSDSDGnskRNSNRAKNSKSNSDNDEP 105
                 333444445556666666666665444444444444433101134444455544444455 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.8   7.1e-05      0.16      52     114 ..      42     103 ..      18     148 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.1e-05
        NPR3  52 kkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeeeeeededdee 114
                 ++ kr+r+  s +k+ k++++  ++s+++++s++++ s+++++ ++k ++++++++++++d++
  CCE27513.1  42 QAAKREREL-SATKSGKSTHDGGDDSESDTASNSDSDSDSDSDGNSKRNSNRAKNSKSNSDND 103
                 444555544.33333344444444444444443333333333333333334444444444433 PP

>> Utp14  Utp14 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   8.8   0.00033      0.75     303     366 ..      35     100 ..      32     117 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00033
       Utp14 303 eaReaiaeqlrrgeeLrrkiegk.eededddddsdedssdseeeedn.se.edaeeekrkkleklke 366
                 ++R   ++ ++r++eL +  +gk ++d +dd++s +  s+s++++d+ s+ +++++++r k +k ++
  CCE27513.1  35 DQRGLFQQAAKRERELSATKSGKsTHDGGDDSES-DTASNSDSDSDSdSDgNSKRNSNRAKNSKSNS 100
                 56667788999************54444444443.33333333322212222222222333333222 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.7   0.00051       1.1     129     179 ..      55     104 ..      27     123 .. 0.50

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00051
       CDC45 129 eeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeee 179
                   +s  +d  +++e+d  +++++++++d++ ++++++++ k++ks+sd++e
  CCE27513.1  55 SGKS-THDGGDDSESDTASNSDSDSDSDSDGNSKRNSNRAKNSKSNSDNDE 104
                 1111.1122444444445555555555555555555554444444444443 PP

>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.8   0.00047         1     106     182 ..      26     101 ..      18     134 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00047
        RAP1 106 saaaileeddskddlefkasqsvvktskpkststeslksssdskskasaksnvksaskyGesssseesatdsskasa 182
                 s a++le  d ++ ++  a+++   +++ +++st+     s+s++ + + s++ s s  G+s+   + a +s ++s 
  CCE27513.1  26 SEATLLEIADQRGLFQQAAKRERELSATKSGKSTHDGGDDSESDTASNSDSDSDSDSD-GNSKRNSNRAKNSKSNSD 101
                 6678888888888888877777666666666666655555555555555555555553.555555555555555444 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  11.0   0.00075       1.7     197     258 ..      45     103 ..      32     109 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00075
                  XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....X CS
  TFIIF_alpha 197 eeeek.kkgggGrskdLkikdkegddeedsdesdkgdededeekkkkKkkkkaknkkkldddk 258
                  + e + +  + G+s     +d  +d e+d  +++++d d d+  + k+++ +akn k+  d++
   CCE27513.1  45 KRERElSATKSGKST----HDGGDDSESDTASNSDSDSDSDSDGNSKRNSNRAKNSKSNSDND 103
                  333334777889995....888888888888888888888888888888999*****955543 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   3.7    0.0049        11      63     100 ..      53      95 ..      29     117 .. 0.40
   2 ?    1.0   0.0      0.13     3e+02      17      34 ..     184     201 ..     183     207 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0049
      FAM176  63 eesekasededeeeeeeeedsseseaeeel.....sefertls 100
                 ++s k+++d  +++e+++ ++s+s+++++      ++++r+ +
  CCE27513.1  53 TKSGKSTHDGGDDSESDTASNSDSDSDSDSdgnskRNSNRAKN 95 
                 2222222222222222222222222222222222233333332 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.13
      FAM176  17 enpEraaLlFvlgvcvGL 34 
                 ++p r aL+F ++v  G 
  CCE27513.1 184 QHPLRQALFFATSVVAGC 201
                 5999**********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1161  (0.0647554); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                       123  (0.00686039); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 1859.36
//
Query:       CCE27514.1  [L=292]
Description: related to N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-27   97.3   0.0    1.4e-27   96.9   0.0    1.2  1  PIG-L     GlcNAc-PI de-N-acetylase


Domain annotation for each model (and alignments):
>> PIG-L  GlcNAc-PI de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   0.0   7.7e-32   1.4e-27       1     129 [.      41     182 ..      41     184 .. 0.95

  Alignments for each domain:
  == domain 1  score: 96.9 bits;  conditional E-value: 7.7e-32
                 EEEESSTTHHHHHHHHHHHHHHHT..T-EEEEEECE--TT---STTTTHH-HHHHHHHHHHHHHHHHCTE...EEEEECC....CBTT-STTS-CHHHH CS
       PIG-L   1 llvlAHpDDellfaggtiaklvaa..gvevkivcltaGdagsplatleekeelaeiRekEaraaakhlgva.dedvffld....fpDgslesydedell 92 
                 +l++AHpDDe++f+++t+++l+++  g++vki+cl++G+a+          +l+e+R+kE+ ++ +hlg++ ++dvf++d    fpD++++++d ++++
  CCE27514.1  41 CLLIAHPDDEAMFFAPTVLALTRPqtGNHVKILCLSTGNAD----------GLGETRRKELVKSGVHLGLRgEDDVFVVDnstdFPDSMTAKWDATRIA 129
                 789*******************9889***************..........*********************9************************** PP

                 HHHHHHH.HHH--..............SEEEEE-TTTT.H-HHHHHHHHHHHH CS
       PIG-L  93 ddlakli.eryrP..............dvvltldpegd.dhpDHtavasaava 129
                 + l +++  +++P              dv++t+d +g  +hp+H +++++a+ 
  CCE27514.1 130 TLLCSAFaPQVSPqrvsdaaskptaniDVLITFDAHGVsSHPNHISLYHGARL 182
                 *******556677************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2204.49
//
Query:       CCE27515.1  [L=477]
Description: uncharacterized protein CPUR_00989 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   10.2   9.4       0.27    9.7   9.4    1.3  1  Rrn6      RNA polymerase I-specific transcription-initiation 
        1.1    8.3   6.1        1.5    7.8   6.1    1.2  1  DUF1501   Protein of unknown function (DUF1501)


Domain annotation for each model (and alignments):
>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   9.4     3e-05      0.27     681     848 ..     262     471 ..     167     472 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 3e-05
        Rrn6 681 ssssssssssedpelsr...edplda....lsrytklikssptslsrsvsniLshWelg.sdpaeydwqrtesaleaeeq...rqrarrkrekrrrrke 768
                 ss sss+ ++++++ ++   +d++        r t++  ++   ++++v     + +   +d+ ++  +r +++ e++++     ++++ +++rrr++e
  CCE27515.1 262 SSPSSSPPPPPQQQQQSmpsKDTVVHprpgQGRTTPSTGTAAAVSQAQVDAETKRLQAMvADEKKLQREREQRDREEQDRirkMLQEEQDAQRRRREAE 360
                 222222222222222222332222221001223333333333332233434444444334667777777777777665555443333333333333333 PP

        Rrn6 769 klklasraeasssssssqssssksssssssqlpsssqvptlpd.................fslsmqissSQvvsss.........mSQpe...rGrFgs 838
                     ++++e+ +++ + q+++    ++  +++p  +qv                      ++++++++s  ++s s          S p     G +g+
  CCE27515.1 361 V---EQETERLRRQYGVQQQQ----QPPLPPRPVPNQVH---PyasgglgggqqqqqlspATMPPRPNSTGPPSGSgsgsgakkkHSGPLsalLGPYGG 449
                 3...55555555555555554....33333333333333...255588888888877776555566555555555466666666655555555666666 PP

        Rrn6 839 Rpak............kKKKRk 848
                  p +            kKKKR+
  CCE27515.1 450 VPGAtmsgffhrldedKKKKRV 471
                 6655888888888888888885 PP

>> DUF1501  Protein of unknown function (DUF1501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.1   0.00017       1.5     137     228 ..     292     379 ..     257     408 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00017
     DUF1501 137 qgltlrssadpvldlsppagvteerqrrrldllkklnqehlqrkndeeleariasyelafralmqseapeafdlsdeteatreaygrdaket 228
                 qg t++s+++   ++  +a+v++e++r ++ ++ + + +  ++++d e + ri++  +  +   +++ ++ +++++ete +r++yg +++++
  CCE27515.1 292 QGRTTPSTGT--AAAVSQAQVDAETKRLQAMVADEKKLQREREQRDREEQDRIRKMLQEEQ--DAQRRRREAEVEQETERLRRQYGVQQQQQ 379
                 4444444443..3444445555555555555544444444467777777777777766666..6777778999***************9443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2080  (0.116013); expected 358.6 (0.02)
Passed bias filter:                      860  (0.047967); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.43
# Mc/sec: 3349.74
//
Query:       CCE27516.1  [L=494]
Description: related to MAP kinase pathway-interacting Ubc2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-15   55.9   0.0    7.6e-15   54.8   0.0    1.5  1  SAM_2     SAM domain (Sterile alpha motif)
      3e-14   53.2   0.0    5.6e-14   52.3   0.0    1.5  1  SAM_1     SAM domain (Sterile alpha motif)
    9.5e-12   45.4   0.0    1.8e-11   44.5   0.0    1.4  1  RA        Ras association (RalGDS/AF-6) domain
    0.00038   20.4   0.0    0.00069   19.5   0.0    1.3  1  SAM_4     SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   1.7e-18   7.6e-15       4      64 ..      68     127 ..      67     129 .. 0.95

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 1.7e-18
                 HHHHHHHHHHHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHHHHH CS
       SAM_2   4 wsledvaeWLrsiglkqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkkiqe 64 
                 ws+ + a+++++igl+qy++ F +++i g e+l  l ++dLk +Gi+svghr+ ilk + +
  CCE27516.1  68 WSAGECADFVSTIGLPQYAESFVENEIVG-EALIALHHDDLKSMGISSVGHRLSILKRVYD 127
                 999**************************.**************************98755 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   1.3e-17   5.6e-14       3      60 ..      68     125 ..      66     129 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.3e-17
                 TTHSSHHHHHHHTTSGGGHHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHHHHH CS
       SAM_1   3 wsvedVgeWLesiglgqYadlFrageidgdaLlllteddLeklgvtllGHrkkIlyaI 60 
                 ws  + +++   igl+qYa++F ++ei g+aL  l +ddL+++g++++GHr++Il+++
  CCE27516.1  68 WSAGECADFVSTIGLPQYAESFVENEIVGEALIALHHDDLKSMGISSVGHRLSILKRV 125
                 8888889************************************************987 PP

>> RA  Ras association (RalGDS/AF-6) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0     4e-15   1.8e-11      14      91 ..     388     463 ..     380     465 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 4e-15
                 TT..EEEEEEETTSBHHHHHHHHHHHCT-GGGGCCEEEECCCTTTTEEEEE-TTSBCHHHHCCC-TTTSTCEEEEEEC CS
          RA  14 pgttyksikvsststaqeViealLekfgledspedyvLveskerggeerkLdddecplqiqlqwkkreeslrFvLrek 91 
                 +   yks +vs  + + +V+ a+L+k+++ + +++y L  ++++g++er L +de+pl +++q+ k+++   F+Lr+ 
  CCE27516.1 388 SVEVYKSFRVSMEDPCHKVLPAALRKYNISPPWDNYGL--YIVYGNQERCLTMDEKPLILFKQLDKEGKKPMFMLRKT 463
                 3347**********************************..************************************96 PP

>> SAM_4  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.5e-07   0.00069      27      73 ..      84     130 ..      68     137 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.5e-07
       SAM_4  27 nyavsfvdnriqknmlldlskeimnelgitvvgdiiailkhakvvyr 73 
                 +ya sfv+n i  + l+ l ++ ++ +gi+ vg  ++ilk    v +
  CCE27516.1  84 QYAESFVENEIVGEALIALHHDDLKSMGISSVGHRLSILKRVYDVKK 130
                 6***************************************9877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3480.45
//
Query:       CCE27517.1  [L=685]
Description: probable LCB2-serine C-palmitoyltransferase subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-60  204.9   0.0    2.8e-60  204.4   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.094   12.0   0.0       0.32   10.3   0.0    1.7  2  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
       0.14   11.8   0.0       0.35   10.6   0.0    1.7  1  DUF3188          Protein of unknown function (DUF3188)


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.4   0.0   4.6e-64   2.8e-60       2     361 ..     259     616 ..     258     617 .. 0.95

  Alignments for each domain:
  == domain 1  score: 204.4 bits;  conditional E-value: 4.6e-64
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT- CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgd 94 
                    + +n++s +ylg +++  ++ +++++  +  g++  +++   g++d++ e+e+++a f+g       k+e a v+++G+  +++ +++l +  +g+
     CCE27517.1 259 ETLNMSSYNYLGFAQSeGPCADAVEECVRryGVSTASPRGDVGTTDLSLEVEKEIAAFVG-------KPE-AMVFSMGYVTNASSFPALVS--KGC 344
                    578*********************************************************.......899.*******************9..*** PP

                    EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTE.......TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEE CS
  Aminotran_1_2  95 eilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnk.......ktkvilvesphNPtGtvatleeleklldlakkynll 183
                     i+++++++as+  ++rlsg+ +++++       h+d+ +le+ l+e  ++ +       k+ +++ve+ +++ Gt+++l+ + +l   ++ky+++
     CCE27517.1 345 LIISDELNHASIRIGARLSGAVIQSFK-------HNDMRSLERVLRESISQGQprthrpwKKILVVVEGLYSMEGTMCDLPGILAL---KDKYKFY 430
                    ***************************.......***************9999*********************************...******* PP

                    EEEEETTTTCBSSSSHTHHH....HGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHH.. CS
  Aminotran_1_2 184 lfvDeaYagfvfgsldavat....ranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaalsdallkqs.. 272
                    lfvDea++++++g+ +        ++++++   ++++g+l K+fG+ G   Gy+++ +++++ lr+  ++  +  ++++ +++++l   +l+    
     CCE27517.1 431 LFVDEAHSVGALGPRG---RgvcdYFGIDTSRVDILMGTLTKSFGANG---GYVAAEKHIIDKLRSTNASTMYgEAPAPCVLMQILASLKLITGel 520
                    *************652...13356999999999***************...***************98777666************998888779* PP

                    ...HHHHHHHHHHHHHHHHHHHHHHSTEEEECCS.CSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS...TTEEEEEC.TTS-HHHHHHHH CS
  Aminotran_1_2 273 ...eleemrqrlqkrrkelrdeLaelglkvlasq.sgmflltdlsaetakelskkLleevgvyvtpgtsftv...pgrlRitv.Aglteeeleelv 360
                       + ee+ qr++ ++++lr +L++lgl+v++ + s ++++t++++ ++ ++s+++l++ ++ v+ + ++ +   ++r R++v +++++e+l++l+
     CCE27517.1 521 cpgQGEERLQRIAFNSRYLRLGLKRLGLIVYGHDdSPIIPVTLYNPGKMPAFSREMLKR-NISVVVVGYPATpliSSRARFCVsSAHNKEDLDRLL 615
                    ********************************999************************.998888889999999*******************98 PP

                    H CS
  Aminotran_1_2 361 e 361
                     
     CCE27517.1 616 A 616
                    6 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.2   1.2e+03      26      51 ..     307     332 ..     294     366 .. 0.84
   2 ?   10.3   0.0   5.3e-05      0.32     120     152 ..     410     442 ..     376     457 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.2
                      HHHHHHHHHHHT-SEEEEESSHHHHH CS
  DegT_DnrJ_EryC1  26 eeFEkafaaylgvkhaiavssGtaAl 51 
                       e Ek++aa++g+  a  +s G  ++
       CCE27517.1 307 LEVEKEIAAFVGKPEAMVFSMGYVTN 332
                      5789***********99999886555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 5.3e-05
                      GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-E CS
  DegT_DnrJ_EryC1 120 lyGqvadmdalkaiaakhglkvieDaAhAlGat 152
                      + G ++d++ + a+ +k++ +++ D Ah++Ga 
       CCE27517.1 410 MEGTMCDLPGILALKDKYKFYLFVDEAHSVGAL 442
                      779****************************84 PP

>> DUF3188  Protein of unknown function (DUF3188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   5.8e-05      0.35       3      27 ..     171     196 ..     169     198 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.8e-05
     DUF3188   3 plLillgllillysqrqgsdr.lqsl 27 
                 +lLil+g ++ ++++r g+++  qsl
  CCE27517.1 171 LLLILVGHICDFFGKRFGNQKhYQSL 196
                 89******************988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4917.84
//
Query:       CCE27518.1  [L=690]
Description: related to acetoacetyl-CoA synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-50  170.2   0.0    7.1e-50  169.8   0.0    1.1  1  AMP-binding    AMP-binding enzyme
      1e-05   26.4   0.1    2.5e-05   25.1   0.1    1.7  1  AMP-binding_C  AMP-binding enzyme C-terminal domain
    0.00017   21.4   1.6    0.00055   19.8   0.2    2.3  2  ACAS_N         Acetyl-coenzyme A synthetase N-terminus


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   0.0   1.2e-53   7.1e-50       9     421 ..     113     561 ..     107     563 .. 0.79

  Alignments for each domain:
  == domain 1  score: 169.8 bits;  conditional E-value: 1.2e-53
                  TTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE... CS
  AMP-binding   9 pdkvalvd....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli... 99 
                  p  +a++     s + +t +++el+e+++r A++Lr++G++++d+Va ++ n +e +va+la++++Ga+   ++p+++  ++   l++ ++kvl+   
   CCE27518.1 113 PSTTAVITttefSRDLRTTSWAELREATRRCANALRAMGLRPHDVVAGYVSNHVEALVAMLAAASIGAIWTGISPDSGVSAVLDRLSQIGPKVLFadn 210
                  56677766777777899******************************************************************************999 PP

                  .......E..TCTCCC..HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS..........-TSCCCS-BTTSEEEEEEE--SSSS-EE CS
  AMP-binding 100 .......a..tvdsel..leklleaaakleavklvivldadellkeeelkeeeeseekae..........kpeeeeelkpddlayiiYTSGTTGkPKG 176
                         +   +++++  +++l ++ + leav ++  +d+d  l    l+++   + + +          +  + e+l p++++y++Y+SGTTG PK+
   CCE27518.1 211 gsvyngkEwpSTSKTKdiVAEL-KKVG-LEAVVVINNIDTDLGLAG--LEAHGVRA-V-DydaflasasdDGLTFEQLPPSHPLYVLYSSGTTGLPKA 302
                  9888775244333333222332.3333.333434444444333333..33333322.2.1356778889955577889******************** PP

                  EEEEH.HHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCH..HHHHHHHHHHHT-SEEEEEHHHHHHHHHCC CS
  AMP-binding 177 Vmlsh.rnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaald..pklllelieklkvtviagvPrvleallesg 271
                  ++++  + l++  +++ + ++ +l+++ ++l +   ++++ +  + ++al++G t+++++++++++     l +l+++lkvt++ +  + l al +++
   CCE27518.1 303 IVHTAlGTLLQHKKEH-MLHC-SLTPSARMLYYTTTSWMMWH--WSIGALAVGTTLIFYSGSPFRPnaYLSLPKLLSDLKVTHFGTSAAYLTALEANN 396
                  *****66666654443.5544.46799*************97..99*****************9552544569***********99999999995543 PP

                  CHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC..EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEE CS
  AMP-binding 272 alkaakkakdlsslrlvllggeplspellrffralfge..evlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGel 367
                   +  +  + dlssl+ +++ ++pl+p++ +f+++ f++  ++  + G T  +  +  +p++   +++g +  +  g+ +++vD  tge+vp+ge+G l
   CCE27518.1 397 VRPIQDPSLDLSSLEAIYSTASPLPPSTFQFVYEAFPRhvNLASITGGTDILSLFG-APCPLLPVRVGQIQCAGLGMAIRVVDSLTGEEVPPGEQGDL 493
                  333456677*****************************999999999999999996.777777777888889989**********************9 PP

                  EEEET..TS-SEBTT.-.HHHHHHHEEE........TCC.EEEEEEEEEE.ETT.SEEEEEEECCCEEE CS
  AMP-binding 368 lvrgp..gvmkgYlk.k.peataeafds........egr.wlrTGDlgrl.ded.GyleivgRkkdlik 421
                  +  +p  +    +++ + +++ + a+++          +   + GD +++ d   G l  +gR++ ++k
   CCE27518.1 494 VCVKPfpCQPLTFFGpDgESKYRAAYFErfenvcgvR-GpVWHHGDFVKIpDSAtGGLVMLGRSDGILK 561
                  9888866788899984334555555555677898643.449999*****977544**********9887 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   4.2e-09   2.5e-05      11      76 .]     583     653 ..     581     653 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 4.2e-09
                    TEEEEEEE-----TTS.---EEEEEE------...HHHHHHHHHHHHT-TTTS-SEEEE-.S---B-TTS- CS
  AMP-binding_C  11 aVaeaaVvGvpdevkG.ealvafVvlkdgsea...leeeLkahvrkelgpyavpkkvvfv.delpktrsGK 76 
                     V++a++vG + e++  e+++ f v  +g+++   l+ ++ka++r+el p  vp  v+ + + +pkt +GK
     CCE27518.1 583 YVEDAVCVGRRRETDRdETVCLFLVMVAGQSLtdeLRGQIKAKIRTELSPRHVPAVVEECgAGIPKTGNGK 653
                    599**********6555********9768422335999999999******99***99966488*******9 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.2   9.2e-08   0.00055       1      54 [.      44     101 ..      44     102 .. 0.89
   2 ?   -0.1   0.1      0.15     9e+02      21      29 ..     678     686 ..     669     689 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 9.2e-08
                 HHHHHHHHHH-HHHHHHHHHCC..S--SB--S-SECST..TTCT-EESTT-EE-HHHH CS
      ACAS_N   1 ykelykeSiedpeaFWaeqake..ldWekpfdkvldgs..kgpfikWFeGGklNicyN 54 
                 y  ly++S+++  aFW+++++   +  +k+ +++l ++    p + +F+  +lN ++N
  CCE27518.1  44 YSGLYQWSVDHVSAFWEDVWDFvgIVSSKKAERALPENcpMYPRPDFFSSSRLNFAEN 101
                 6779*****************66799*********88744678************999 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.15
                 CCS--SB-- CS
      ACAS_N  21 keldWekpf 29 
                 + l+W+k +
  CCE27518.1 678 ESLEWFKNW 686
                 237777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4972.24
//
Query:       CCE27519.1  [L=359]
Description: probable guanine nucleotide-binding protein beta subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-38  128.7  18.4    3.1e-07   31.0   0.1    7.2  7  WD40         WD domain, G-beta repeat
    1.5e-14   54.0   0.0    0.00025   21.3   0.1    4.8  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    2.9e-05   23.2   0.2        0.4    9.6   0.0    3.8  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
    0.00024   21.1   0.0       0.18   11.7   0.0    2.6  3  eIF2A        Eukaryotic translation initiation factor eIF2A
     0.0042   16.5   0.0        0.3   10.4   0.0    2.8  2  WD40_like    WD40-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   6.6e-09   2.4e-05       4      38 .]      64      99 ..      61      99 .. 0.94
   2 !   13.2   0.1   3.5e-05      0.13      12      38 .]     115     141 ..     103     141 .. 0.86
   3 !   14.4   0.1   1.5e-05     0.055       5      38 .]     154     187 ..     151     187 .. 0.91
   4 !    9.4   0.0   0.00058       2.1       1      38 []     191     230 ..     191     230 .. 0.82
   5 !   31.0   0.1   8.6e-11   3.1e-07       2      38 .]     235     272 ..     234     272 .. 0.95
   6 !   18.4   0.0   8.1e-07    0.0029      12      38 .]     290     316 ..     277     316 .. 0.87
   7 !   25.2   0.7   5.7e-09     2e-05       1      37 [.     320     357 ..     320     357 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 6.6e-09
                EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                 rtl+GH   ++++ +s d + l+s+s Dg++ iWd
  CCE27519.1 64 KRTLKGHlAKIYAMHWSTDRRHLVSASQDGKLIIWD 99
                689****999*************************9 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.5e-05
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 +v  +a+ p+g+++a+G+ D+ + i++
  CCE27519.1 115 WVMTCAYAPSGNFVACGGLDNICSIYN 141
                 488889*******************97 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.5e-05
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 r+l+GH +  ++++f  d + l+s++ D t++ Wd
  CCE27519.1 154 RELSGHaGYLSCCRFINDRSILTSSG-DMTCMKWD 187
                 789***777*************9999.*******9 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00058
                 TEEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 
                 gq+++++  H ++v s++ ++ +++ ++sG  D   ++Wd
  CCE27519.1 191 GQKVTEFADHlGDVMSISlNPTNQNTFISGACDAFAKLWD 230
                 678899999**9*****965555555889966*******9 PP

  == domain 5  score: 31.0 bits;  conditional E-value: 8.6e-11
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + ++t+ GH s++++++f pdg+ +++GsdD t+r++d
  CCE27519.1 235 KAVQTFAGHeSDINAIQFFPDGHSFVTGSDDATCRLFD 272
                 6789*****999************************98 PP

  == domain 6  score: 18.4 bits;  conditional E-value: 8.1e-07
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 ++ts+a+s +g++l++G dD  +++Wd
  CCE27519.1 290 GITSVATSVSGRLLFAGYDDFECKVWD 316
                 49************************9 PP

  == domain 7  score: 25.2 bits;  conditional E-value: 5.7e-09
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 g+++++l GH + v++l +s dg  l++Gs+D  ++iW
  CCE27519.1 320 GEKVGSLVGHeNRVSCLGVSNDGISLCTGSWDSLLKIW 357
                 578999****999************************* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   6.9e-08   0.00025      37      83 ..      70     116 ..      57     189 .. 0.90
   2 ?    3.1   0.0     0.033   1.2e+02      26      88 ..     191     251 ..     176     253 .. 0.78
   3 !   12.1   0.0   5.1e-05      0.18      34      74 ..     240     280 ..     224     289 .. 0.80
   4 !   11.5   0.0   7.6e-05      0.27      41      88 ..     291     337 ..     280     341 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 6.9e-08
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkseka 83 
                  +  ++ +++W+ d + L+ a +dg++ + da++++ vh+++  s+  
   CCE27519.1  70 HLAKIYAMHWSTDRRHLVSASQDGKLIIWDAYTTNKVHAIPLRSSWV 116
                  557899**********************************9998853 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.033
  ANAPC4_WD40  26 gqrvwtleedkedsevrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  gq+v ++  +++ + v s++ +p + + +  +  d   +l d+  gk v+++  ++++ ++ ++
   CCE27519.1 191 GQKVTEF--ADHLGDVMSISLNPtNQNTFISGACDAFAKLWDIRAGKAVQTFAGHESD-INAIQ 251
                  5777777..56677788888887345678889999999*************9887774.87776 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 5.1e-05
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvh 74 
                   ++++s ++++++ pdg+ ++ + +d ++rl+d+   + ++
   CCE27519.1 240 FAGHESDINAIQFFPDGHSFVTGSDDATCRLFDIRADRELN 280
                  3688999**************************98877665 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 7.6e-05
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  ++s+a + +g+lL  +y+d e+++ d+  g+ v sl  +++ +v+clg
   CCE27519.1 291 ITSVATSVSGRLLFAGYDDFECKVWDITRGEKVGSLVGHEN-RVSCLG 337
                  88999999****************************76666.7***97 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0022       7.9     163     221 ..      46     105 ..      17     115 .. 0.82
   2 !    9.6   0.0   0.00011       0.4     188     268 ..     114     196 ..     105     198 .. 0.82
   3 ?    2.4   0.0     0.018        63     186     217 ..     243     274 ..     226     281 .. 0.84
   4 ?    0.8   0.0     0.053   1.9e+02     185     214 ..     328     357 ..     307     359 .] 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0022
    Ge1_WD40 163 iaskygsgelsveeieegllkieeh.sliveaafspdGtalatasedGevkffqvylede 221
                 ++++  + ++ ++++ ++   ++ h ++i    +s+d   l  as+dG++  +  y +++
  CCE27519.1  46 VVAQQAHEPIPKNQLMKAKRTLKGHlAKIYAMHWSTDRRHLVSASQDGKLIIWDAYTTNK 105
                 4555666778888888888888999569**************************999886 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00011
    Ge1_WD40 188 sliveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnhke...esdeqfWrfaitgadnnse 268
                 s +++ a++p G  +a    d +   + ++++ +   r   e   h+G  ls+  f+++      + d ++ ++ i + ++ +e
  CCE27519.1 114 SWVMTCAYAPSGNFVACGGLDNICSIYNLNQQRDGPTRVARELSGHAGY-LSCCRFINDRSIltsSGDMTCMKWDIETGQKVTE 196
                 579999******************************************7.5666666654332214599999999988777666 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.018
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqvy 217
                 ++s i    f pdG +  t s d + ++f + 
  CCE27519.1 243 HESDINAIQFFPDGHSFVTGSDDATCRLFDIR 274
                 446899999********************986 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.053
    Ge1_WD40 185 eehsliveaafspdGtalatasedGevkff 214
                  ++  +++  +s dG +l t s d ++k +
  CCE27519.1 328 GHENRVSCLGVSNDGISLCTGSWDSLLKIW 357
                 45568899999**************99988 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0     5e-05      0.18      61     132 ..      73     142 ..      57     194 .. 0.83
   2 !    6.6   0.0    0.0018       6.6      59     118 ..     201     262 ..     170     264 .. 0.76
   3 ?    2.8   0.0     0.026        93      59     138 ..     244     323 ..     227     349 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5e-05
                 .EEEEEE-TTSS-EEEEESSSSCEEEEEEC.SCEEEEEEEEES..--EEEE-TTSSEEEEE-TTSSS-EEEEEET CS
       eIF2A  61 pihdvaWspkskefaviyGkmpakvslfdl.kvkviskleeqk..rNtiffspkgklvllaGfgnlaGeleiwdv 132
                 +i++++Ws+++++  ++   ++ k  ++d  + ++++ +  ++    t  + p+g++v+ +G+ n+    +i++ 
  CCE27519.1  73 KIYAMHWSTDRRH--LVSASQDGKLIIWDAyTTNKVHAIPLRSswVMTCAYAPSGNFVACGGLDNI---CSIYNL 142
                 699*****99887..47889999999999955888888766651157889***************9...555554 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0018
                 SS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.CEEEEEE..EEES--EEEE-TTSSEEEEE CS
       eIF2A  59 egpihdvaWspkskefaviyGkmpakvslfdlk.vkviskl..eeqkrNtiffspkgklvlla 118
                  g++  ++ +p++++ + i G  +a ++l+d + +k++ ++  +e+  N+i f p g+ ++++
  CCE27519.1 201 LGDVMSISLNPTNQN-TFISGACDAFAKLWDIRaGKAVQTFagHESDINAIQFFPDGHSFVTG 262
                 566777777776554.5689************8767777772256778*********988765 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.026
                 SS.EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEEEES.....--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEE CS
       eIF2A  59 egpihdvaWspkskefaviyGkmpakvslfdlkvkviskleeqk.....rNtiffspkgklvllaGfgnlaGeleiwdvkkkkki 138
                 e +i +++  p+++ f  + G  +a+  lfd +++   ++  ++       ++  s +g+l l+aG+ ++  e ++wd ++ +k+
  CCE27519.1 244 ESDINAIQFFPDGHSF--VTGSDDATCRLFDIRADRELNVYGSEsilcgITSVATSVSGRL-LFAGYDDF--ECKVWDITRGEKV 323
                 4567777777777777..5677777777777764433333222201111344555555554.45666666..5566666655555 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   8.3e-05       0.3       7      88 ..     120     207 ..     114     252 .. 0.67
   2 !    3.8   0.0    0.0086        31       2      37 ..     246     281 ..     245     347 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.3e-05
   WD40_like   7 diskkgslilyGgkddkctvlklesle..svsivesfedSvif...vklldddlilvvtlDGtillslleneeeven.ekieedistv 88 
                  + + g++++ Gg d+ c +++l+++      +  +++    +   +++++d  il  + D t ++ ++e +++v +  +   d+  +
  CCE27519.1 120 AYAPSGNFVACGGLDNICSIYNLNQQRdgPTRVARELSGHAGYlscCRFINDRSILTSSGDMTCMKWDIETGQKVTEfADHLGDVMSI 207
                 567899*****************986522456666666554443339**************************665414555554444 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0086
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsi 37 
                 +i +i++ ++g+ ++ G++d +c++++++ + +  +
  CCE27519.1 246 DINAIQFFPDGHSFVTGSDDATCRLFDIRADRELNV 281
                 6778999999999**************999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      709  (0.0395449); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2460.99
//
Query:       CCE27520.1  [L=287]
Description: probable phosducin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-10   39.9   0.0    2.1e-09   36.7   0.0    2.1  1  Phosducin  Phosducin
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.26   11.2   0.0    1.6  1  DUF2847    Protein of unknown function (DUF2847)


Domain annotation for each model (and alignments):
>> Phosducin  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   2.4e-13   2.1e-09      22     239 ..      73     286 ..      59     287 .] 0.73

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 2.4e-13
                 SSHHHHHHHHHHHHH.HH--------------------.........----------------S-HHHHHHHTT----HHHHHHHHHHHHHHHHHHH-- CS
   Phosducin  22 ntgpkgvindwrkfkqlesedreevarekkrllkklssscrshldeeeesrddkdlkekisrkmslkeyelidkdkddeeflrkyrkqrmdemrqklsk 120
                  tg kgvi d r f           ar+ k + +  ss+ rs +   +     +      s+        l   d d+e fl+++r  r  e++ + s 
  CCE27520.1  73 STGVKGVIADARSFE---------TARKTKWIDRAKSSARRSMMGITNAVYSSRGGSRSESET---DSDALSGLDSDEESFLQQWRETRRRELEGEASR 159
                 689999999999987.........455555555555555555555554444443332222222...222344568899999999999998888766554 PP

                 ---..........--SEEE--SHHHHHHHHHSS-TT-EEEEEEE-TTSTTHHHHHHHHHHHHHH-TTSEEEEEEHHHH--TTSS-TTT-SEEEEEE.TT CS
   Phosducin 121 gpr..........fkfvlelesgeqfldtidkeqkitlivvhiyedgvkgtealnssliclaaeyptvkfckvkasvigasdrfsrdvlpallvyk.ag 208
                   r          f+++ e+++  ++ld i+k  + t +vv +++   + + a++s+l+ l   +ptv+f kv    i       + ++pa+l y+  g
  CCE27520.1 160 AVRtrrtspsarvFGQLDEVDA-LGYLDAIEKVSRETKVVVFVHDPECDVSAAVESALLPLVGLHPTVHFVKVLYLDIEV----DNAAVPAILAYHnQG 253
                 3221112222334778888875.69************************************************9988865....5679******9736* PP

                 EEEEEETTGGGGS-..TT--HHHHHHHHHTTT- CS
   Phosducin 209 ellsnfvrvtdqla..edffavdleaflqefgl 239
                 +l++n+  + + +   e + ++ l+a+lq++ +
  CCE27520.1 254 DLFANLTGIIEMMPdeESYSTASLKALLQKHQV 286
                 ***********9962256889999999998765 PP

>> DUF2847  Protein of unknown function (DUF2847)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.9e-05      0.26       9      57 ..     185     235 ..     177     245 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.9e-05
     DUF2847   9 leeileeskekpvlifKhstrcsiSaealkelekeleeeeee..vkvylld 57 
                 l++i + s+e++v++f h+ +c +Sa++ + l   +  +++   vkv +ld
  CCE27520.1 185 LDAIEKVSRETKVVVFVHDPECDVSAAVESALLPLVGLHPTVhfVKVLYLD 235
                 7899999********************999988887777754345555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2068.70
//
Query:       CCE27521.1  [L=635]
Description: uncharacterized protein CPUR_00995 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.2    9.8   0.0        1.2    9.8   0.0    2.5  3  DUF883    Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   6.5e-05       1.2       7      75 ..     440     508 ..     434     510 .. 0.94
   2 ?   -2.6   0.1      0.48   8.7e+03      31      43 ..     526     538 ..     511     564 .. 0.51
   3 ?   -1.0   1.2      0.15   2.7e+03      24      56 ..     583     615 ..     572     623 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 6.5e-05
      DUF883   7 leslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVrenPwq 75 
                 +++l +d+  l+  aa ea++ +  +++  ++  +++ +++  a++++  ++++ a++ +  V e+Pw+
  CCE27521.1 440 TRNLASDISGLVPVAAHEAEKCLIGAKKSFSAVSDSVTSSVVTASDNLLCSIRDSAHRMQVLVGEQPWS 508
                 48999***************************************************************6 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.48
      DUF883  31 elRerleerlera 43 
                 +lR +++ +l+++
  CCE27521.1 526 SLRTQIMHKLKES 538
                 4444444444433 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.15
      DUF883  24 eageeaeelRerleerlerarerlrdaeeavae 56 
                 +a+  ++++R++ +++ +r   + r+++++v++
  CCE27521.1 583 KAKMFMDSMRDKGQDETNRPHRAQRHQRQHVRH 615
                 333334444444444444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4366.26
//
Query:       CCE27522.1  [L=247]
Description: probable spi1-GTP-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-49  166.4   1.1    5.2e-49  165.6   1.1    1.4  1  Ran_BP1   RanBP1 domain
  ------ inclusion threshold ------
      0.023   15.0   0.0      0.038   14.3   0.0    1.3  1  VID27_PH  VID27 PH-like domain
      0.079   12.2   0.5       0.15   11.3   0.1    1.6  2  PS-DH     Polyketide synthase dehydratase
        4.7    7.2   9.7        2.3    8.2   4.6    2.3  2  Mucin     Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> Ran_BP1  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.6   1.1   1.2e-52   5.2e-49       1     121 [.      99     220 ..      99     221 .. 0.98

  Alignments for each domain:
  == domain 1  score: 165.6 bits;  conditional E-value: 1.2e-52
                 ----SSTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-TTS-EEESTTESSEEEEEE.EE-TTSSSEEEE CS
     Ran_BP1   1 evksgEEdEevlfkqraKLfrfdaekkewkeRGvGdiKilkkkddekvRllmRrdqvlkvcaNhvitkemklkplagsdrslvwta.adaadeeakleq 98 
                 e k+ EE E  lfk+raKLf+f+++++ewkeRG+Gd++ilk+k++ k+Rl+mRrd++lkvcaNh+i +emkl p+ gsdrs+vw+a ad++++e+++++
  CCE27522.1  99 ETKTHEEAETQLFKMRAKLFKFNKDTSEWKERGTGDVRILKHKENLKTRLVMRRDKTLKVCANHYILPEMKLSPNVGSDRSWVWNAaADVTEGEPEAVT 197
                 6799*********************************************************************************989*********** PP

                 EEEEESSHHHHHHHHHHHHHHHH CS
     Ran_BP1  99 laikfkkkeeadefkkkfeeakk 121
                 lai+f + e+a+ fk++fe+ +k
  CCE27522.1 198 LAIRFANTENANLFKEAFEQGQK 220
                 *******************9987 PP

>> VID27_PH  VID27 PH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.4e-06     0.038       3     104 ..     110     217 ..     104     220 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.4e-06
    VID27_PH   3 laeeeaeLhlfDaesgeFilqeeevkaaviel.gkweYwLqie.geeekewlgqevsadmnpvfnfey.lsfifnyvsedge....alSwlLrFkdeee 94 
                 l++ +a+L+ f+ ++ e+  +    ++ +++  ++ +  L+++ +++ k   ++ + ++m+   n+    s ++n+  + +e    a++  +rF ++e+
  CCE27522.1 110 LFKMRAKLFKFNKDTSEWKERGT-GDVRILKHkENLKTRLVMRrDKTLKVCANHYILPEMKLSPNVGSdRSWVWNAAADVTEgepeAVTLAIRFANTEN 207
                 67788999999999999966644.455555544999******9677777778999*****9999986428******9865545578************* PP

    VID27_PH  95 leefqealmr 104
                  + f+ea+ +
  CCE27522.1 208 ANLFKEAFEQ 217
                 *******987 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       1.4   6.1e+03     116     129 ..      19      32 ..      11      41 .. 0.47
   2 ?   11.3   0.1   3.3e-05      0.15      50     130 ..      68     142 ..      63     161 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.4
                 EEEEEEEEEE---- CS
       PS-DH 116 tehatGtvrlaega 129
                 t+ at+t++++e+a
  CCE27522.1  19 TTEATATATATEEA 32 
                 33333333333322 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.3e-05
                 HHHHHHHTS---.-EEEEEEEE----.B--SS-EEEEEEEEE-TTS-E....EEEEEEE-SS-TT.EEEEEEEEEE----- CS
       PS-DH  50 aleAarqltgeskavelrdvsilkalvlpedepvevqlslepeedgadrawvefeifSregggeewtehatGtvrlaegaa 130
                  + Aar++ +++ + e  dv+++  + l e+    v++  ++e++ +   ++++++f ++++++ew+e  tG vr+ ++++
  CCE27522.1  68 HRDAAREAGEDE-PPESVDVHFEPVIKLTEK----VETKTHEEAETQL-FKMRAKLFKFNKDTSEWKERGTGDVRILKHKE 142
                 678999999999.9999*********99964....5555555544444.889************************99887 PP

>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.6   0.00051       2.3      62      92 ..       9      39 ..       1      65 [. 0.59
   2 ?    1.7   0.2     0.051   2.3e+02      25      48 ..     214     238 ..     184     244 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00051
       Mucin 62 ttasttittkttkattttttttttttateaP 92
                +  ++t+ t+tt+at+t+t+t  +t  t aP
  CCE27522.1  9 SKVAETKPTETTEATATATATEEATLDTSAP 39
                2223333333444444444444444444444 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.051
       Mucin  25 angeGqsdaav.veaaegqsklttt 48 
                 a ++Gq+d+++ ++aae+q++++ +
  CCE27522.1 214 AFEQGQKDNQEvFQAAEAQDDSNES 238
                 6789999988626899999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1232  (0.0687155); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1875.54
//
Query:       CCE27523.1  [L=240]
Description: related to transcription initiation factor IIF 30K chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-20   71.9   0.0    6.5e-20   70.9   0.0    1.6  1  YEATS     YEATS family
    4.4e-06   26.8   0.6    4.5e-05   23.5   0.6    2.3  1  BET       Bromodomain extra-terminal - transcription regulati
  ------ inclusion threshold ------
      0.061   13.6   0.0       0.16   12.3   0.0    1.7  2  DUF2513   Hypothetical protein (DUF2513)


Domain annotation for each model (and alignments):
>> YEATS  YEATS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   1.1e-23   6.5e-20       1      79 [.      36     116 ..      36     118 .. 0.91

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 1.1e-23
       YEATS   1 thkWtvavrsa.asddl..sefikkVqFkLhetyanptrvvekpPFevtetGwGeFeiqikiffkpeaekpltlehdLklhp 79 
                 +++W+++++ + ++ ++  +++++kV+++Lh+t++np+++++kpPF +t++GwGeFei+++++ +++  k   + hdL++ +
  CCE27523.1  36 MREWSLQLHLLdEEGNErpADLFTKVVYNLHPTFENPVQTFTKPPFLCTNEGWGEFEISVECYTTEK-SKLAPIIHDLNFGE 116
                 589******9966655567**********************************************77.688********976 PP

>> BET  Bromodomain extra-terminal - transcription regulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.6   7.5e-09   4.5e-05       9      63 ..     169     234 ..     166     235 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 7.5e-09
         BET   9 eLseeInkLpgeklgrvveIIqere..........pelq.sdedEiElDidaldddtLreLekyvk 63 
                 +++e+++kL++e+l rv+++I e++            ++ ++ +E  +D+ +++d    +L++y++
  CCE27523.1 169 KIAEALEKLDEEDLLRVIQLINENKgpdtyirsdiEAENlTEAGEFSIDLYTMPDPLTSKLWEYLA 234
                 899***********************99999988744456999*********************87 PP

>> DUF2513  Hypothetical protein (DUF2513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.4   8.3e+03      32      53 ..      27      50 ..      10      50 .. 0.63
   2 ?   12.3   0.0   2.7e-05      0.16      32      78 ..     157     212 ..     136     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
     DUF2513 32 s..aidgyskeeiiyhlkllaeag 53
                +   +++++ +e + +l+ll+e+g
  CCE27523.1 27 KpsPVAEFPMREWSLQLHLLDEEG 50
                134677778888888888888875 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.7e-05
     DUF2513  32 s...aidgyskeeiiyhlkllaeagLieaekkkakss......iislvvkrLtweG 78 
                     ++ +y+ e+i+++l++l+e++L+++ +   +++       +++++++Lt +G
  CCE27523.1 157 LgkkNVHKYDYEKIAEALEKLDEEDLLRVIQLINENKgpdtyiRSDIEAENLTEAG 212
                 255599*********************99988888887888877888888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1714.85
//
Query:       CCE27524.1  [L=1150]
Description: related to ARO80-positive transcription regulator of ARO9 and ARO10 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-07   30.2  11.9    6.3e-07   29.4  11.9    1.4  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
       0.46   10.6  11.7       0.19   11.8   5.9    2.3  2  DDHD            DDHD domain
       0.62    9.0   3.4        1.2    8.1   3.4    1.4  1  Membralin       Tumour-associated protein
       0.79   10.1  12.8       0.32   11.4   7.0    2.4  2  EPL1            Enhancer of polycomb-like
        7.1    6.7   7.8         15    5.6   7.8    1.5  1  MCU             Mitochondrial calcium uniporter
        7.8    5.2   7.4         15    4.3   7.4    1.4  1  ALMT            Aluminium activated malate transporter


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4  11.9   2.1e-10   6.3e-07       1      39 [.      75     119 ..      75     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.1e-10
                 SS-HHHHHCT---ST...SSSS...-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   1 haCdnCrkkKvKCda...kkPa...CsnCkklnleCtfysesskr 39 
                 +aC++Cr++Kv+Cd    ++P+   C +C++ +++C f   ++kr
  CCE27524.1  75 QACIPCRRRKVRCDLgsvDNPHdppCVRCRRESKDCFFSATRRKR 119
                 69****************8888888***********987777776 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.3     0.092   2.8e+02     134     159 ..      40      61 ..      17     141 .. 0.55
   2 ?   11.8   5.9   6.5e-05      0.19     120     185 ..     290     390 ..     219     417 .. 0.46

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.092
        DDHD 134 sksherasesskasqeskaaesstas 159
                 ++     +e+++++q+s+a+++ +++
  CCE27524.1  40 QQ----YREQEQQQQQSQAQSHPDSQ 61 
                 11....11111111111111111111 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 6.5e-05
        DDHD 120 lelaeeesaslaessksherasesskasqeskaaesstasssaksskaee.......kvelek...................................v 176
                 l+++++++++++++++++++++++++++q+     +++++++++++++         +    +                                    
  CCE27524.1 290 LDVEQQQQQQQQQQQQTQQEQQQQQQQQQQ---LLQQEQEQQRQRQQQPFnqhpqqqE----QraqapfvhhprpnppqqtgdpglaqqsdmqaqpgyA 381
                 122222222222222222222111111111...1111111111111111122222220....1233333334444445555555555555555566665 PP

        DDHD 177 ralnwwgRi 185
                 +al+ w R 
  CCE27524.1 382 QALRAWSRF 390
                 566666654 PP

>> Membralin  Tumour-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.4   0.00041       1.2      72     146 ..     283     354 ..     268     419 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00041
   Membralin  72 prdGilrveivrnlkksevllessekeeesekkisisenkkvllkeasvtlleesvlevsleaeeeekessslkk 146
                 pr  + r ++ +++++++  ++++++e+++++   +++++  +++++++ + +++ ++ + +++e+++++  +++
  CCE27524.1 283 PRSVLSRLDVEQQQQQQQQQQQQTQQEQQQQQ---QQQQQLLQQEQEQQRQRQQQPFNQHPQQQEQRAQAPFVHH 354
                 56666677777776666444444443333332...3445555555555555555555555555555555444444 PP

>> EPL1  Enhancer of polycomb-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3      0.14   4.1e+02      23      41 ..      39      57 ..      22      99 .. 0.55
   2 ?   11.4   7.0   0.00011      0.32      15      76 ..     294     344 ..     271     416 .. 0.52

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.14
        EPL1 23 deseseeeiseknsnkens 41
                +++++e+e+++++s+ +++
  CCE27524.1 39 AQQYREQEQQQQQSQAQSH 57
                2222222222222222222 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00011
        EPL1  15 seeevdgldeseseeeiseknsnkensqqavetgvdkkeen.....ekhqviaaakkkesssasske 76 
                 ++++ ++ +++++++e+++++++        +        +     e++q  + +++  +++++++e
  CCE27524.1 294 QQQQQQQQQQQQTQQEQQQQQQQ--------Q--------QqllqqEQEQQRQRQQQPFNQHPQQQE 344
                 11111111111111111111111........1........111111111111222222222222222 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.8    0.0051        15      26      81 ..     266     329 ..     222     338 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0051
                 X........XXXXXXXXXXXXXXXXX-SSSSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTC CS
         MCU  26 e........eeakvllrvkqlvkalesalnveeeqlkkereleekleelreelepleekkeeid 81 
                           +a++l+r+++++++l    + +++q++++++ +e++++ +++ + l++++e+ +
  CCE27524.1 266 AhqitphevTTASDLSRPRSVLSRLDVEQQQQQQQQQQQQTQQEQQQQQQQQQQLLQQEQEQQR 329
                 0344455555678999********9888877766666666666666664444444444433333 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   7.4     0.005        15     349     402 ..     289     343 ..     199     378 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.005
        ALMT 349 kLlvnsekweaakkkekaeeveekkeeekeseskkeea.eaveeaeseseksllk 402
                  L v+ +++++++++++++++++++++++++  ++e++ +++++++  +++ +++
  CCE27524.1 289 RLDVEQQQQQQQQQQQQTQQEQQQQQQQQQQLLQQEQEqQRQRQQQPFNQHPQQQ 343
                 3344444433333333333332222222222222222211111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3939  (0.2197); expected 358.6 (0.02)
Passed bias filter:                     1259  (0.0702214); expected 358.6 (0.02)
Passed Vit filter:                       397  (0.0221429); expected 17.9 (0.001)
Passed Fwd filter:                        83  (0.00462937); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.74u 0.39s 00:00:02.13 Elapsed: 00:00:00.52
# Mc/sec: 6606.47
//
Query:       CCE27525.1  [L=1198]
Description: uncharacterized protein CPUR_00999 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0002   21.1   0.0    0.00046   20.0   0.0    1.6  1  Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein


Domain annotation for each model (and alignments):
>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.6e-08   0.00046      15     118 ..      24     121 ..      11     123 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.6e-08
                  SEEEEEEECTTTEEEEEESS-.HHHHHHHHH...HTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHHHHHHHHHHHHCTTSEEEEEE- CS
  Cofilin_ADF  15 kyilfkidddkeeivveeege.tyeelreel...peseprYavydveyehddeskrsklvfIswvPdsapikqkmlyasskdalkkelkgisveieat 108
                   ++l+ +++  + ++v ++g+  ++e r+++   +e+ p Y+++++           + v I + Pd+++   ++ +a + +a+ + ++ +   +e+t
   CCE27525.1  24 GWFLLAYEGR-DAVRVLSRGNgGISEVRNAVaeyEETSPLYGFLKYR---------RRSVVIKYLPDNCSRIIQARVAVHFNAVCERFSPYDTMFEIT 111
                  5899999976.589998988885666666664447889******987.........457*********************************99**** PP

                  CGGCCSHHHH CS
  Cofilin_ADF 109 dldelteeel 118
                  +++el+++ l
   CCE27525.1 112 SASELKDSKL 121
                  *****98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       844  (0.0470746); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 7802.03
//
Query:       CCE27526.1  [L=516]
Description: related to phosphoprotein phosphatase 2C [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-61  207.3   0.2      1e-48  166.3   0.2    3.0  2  PP2C      Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   2.6e-13   4.7e-09       9     110 ..     151     271 ..     143     278 .. 0.77
   2 !  166.3   0.2   5.6e-53     1e-48     100     257 ..     314     469 ..     287     470 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.6e-13
                 CCCCSSHHEEEECCCCTCTT........................CCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTHHHHHHHHHHHHHH CS
        PP2C   9 qgarksmedahislanless........................sgkssvsffavfdghggseaakyarehleeilksqksfeelekleqalrksflad 83 
                 +++r++med+h++l n+ +                           +s+ ++fa+fdgh+gs aa++++++l+ il++   +++     + l +sf + 
  CCE27526.1 151 KNCRRTMEDTHAFLYNFLATpssngevltkskpehiaaegigkgMVESDNGYFAIFDGHAGSFAADWCGKKLHLILEEAIRKNPTVAIPELLDQSFCS- 248
                 55566666666666555555555556666666666666555555899***********************************9999999*********. PP

                 HHHHHHHHHHHCHCCT-EEEEEEEEEE CS
        PP2C  84 tdeelksskantepsksGstavvalir 110
                  d +l++        +sG+ta val+r
  CCE27526.1 249 VDAQLDK-LP---LRNSGCTAAVALLR 271
                 7777777.33...468********997 PP

  == domain 2  score: 166.3 bits;  conditional E-value: 5.6e-53
                 -EEEEEEEEEETTE..........EEEEEESS-EEEEEETTEEEEECS---STTSHHHHHHHHHTT--EEECCEEETTTBSBSB-EE-GGGTCCCCCCS CS
        PP2C 100 sGstavvalirgtk..........lyvAnvGDSravLcrkgnakkeltedHkpsdedEreRIeeaggsvsngegrvngsLavsRalGDlelkpketeeq 188
                   s +++  +++tk          ly+AnvGD+r++Lcr g+a  +l++dHk+sde E +RI +agg +   ++rvng+Lav+RalGD +lk+      
  CCE27526.1 314 TVSSSSLDAVSHTKrkaatvrqriLYTANVGDARIILCRGGKAL-RLSYDHKGSDEIEGRRIANAGGLIL--NNRVNGVLAVTRALGDAYLKD------ 403
                 333333333333333344777778*******************9.*************************..********************9...... PP

                 TSB---EEEEEEE-TT.EEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCHHCH CS
        PP2C 189 lvsaePdvtsvkltee.defliLacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiargsedn 257
                 lv+ +P++t++ ++ + def+i+acdG+wdv +dq+avdlvr+  +    p  ++++lvd a++r s+dn
  CCE27526.1 404 LVTGHPYTTETVIQHDlDEFIIIACDGIWDVCNDQDAVDLVREVHD----PILASKQLVDLALRRFSTDN 469
                 ******************************************9888....9******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3770.59
//
Query:       CCE27527.1  [L=228]
Description: probable class E vacuolar-protein sorting and endocytosis factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-34  116.8  19.1    7.7e-34  116.8  19.1    1.4  2  Snf7       Snf7
  ------ inclusion threshold ------
      0.083   13.1   1.0      0.083   13.1   1.0    2.1  3  CaMBD      Calmodulin binding domain
       0.16   11.9   6.6       0.24   11.3   6.6    1.3  1  Ist1       Regulator of Vps4 activity in the MVB pathway
       0.47   10.0   3.0       0.67    9.6   3.0    1.2  1  DDE_Tnp_1  Transposase DDE domain
        2.3    7.7  16.9        2.5    7.6   5.7    2.5  3  PspA_IM30  PspA/IM30 family


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8  19.1   2.2e-37   7.7e-34       2     170 ..      21     186 ..      20     191 .. 0.96
   2 ?   -2.6   0.0      0.98   3.5e+03     139     150 ..     216     227 ..     211     228 .] 0.83

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 2.2e-37
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        Snf7   2 airsLrkaerkldkkqeslekkikkleaelkklakkgnkdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkamnkk 100
                 ++r L ka+r+ld+ + +lek++k l +++k  ak g++ ++++ +K+++r++++++++ +++++l+++sl +++  +n ++++amk+++ a+ +mnk 
  CCE27527.1  21 NQRMLDKAIRELDQTRIKLEKQEKTLIQQIKTSAKNGQMGACKIQAKDLVRTRRYIEKFFAMRSQLQKISLRLQTYRTNEQMMQAMKGATMALGSMNKS 119
                 7899*********************************************************************************************** PP

                 TCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-.GGTTHHHHHHHHHHHHHHHHHCSH.HHHHHHHTXXX CS
        Snf7 101 vdidkidklmdeiedqmekaeeisEalsrsldda.deedEeeleaeLdaLeqelgdeelldesvklpevPs 170
                 +++++++++ +e+e++++++e+ +E++++++dda d   Eee +++++++++e+g +     ++ + e P+
  CCE27527.1 120 MNLPQLQRIAMEFERENDIMEQRQEMMDDAVDDAmDVGVEEEGDEVVEQVLEEIGVDL----GQAMGETPN 186
                 **********************************9*******************9987....555555554 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.98
                 HHHHHHHHHHHH CS
        Snf7 139 EeeleaeLdaLe 150
                 +++l+a Ld L 
  CCE27527.1 216 DDDLQARLDSLK 227
                 899***999985 PP

>> CaMBD  Calmodulin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.0   2.3e-05     0.083      34      62 ..      15      43 ..       6      55 .. 0.85
   2 ?   -2.8   0.2       2.1   7.7e+03      49      49 ..      84      84 ..      64     106 .. 0.52
   3 ?   -2.8   0.5       2.1   7.6e+03      57      68 ..     142     153 ..     136     156 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.3e-05
       CaMBD 34 qsrvrkhqRklLqAihrlRkvkmeqrkln 62
                ++r+rk qR+l +Ai++l +++++  k++
  CCE27527.1 15 AERLRKNQRMLDKAIRELDQTRIKLEKQE 43
                689********************998875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.1
       CaMBD 49 h 49
                +
  CCE27527.1 84 S 84
                2 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.1
       CaMBD  57 eqrklnDqantl 68 
                 +q ++ D +++ 
  CCE27527.1 142 RQEMMDDAVDDA 153
                 244555555555 PP

>> Ist1  Regulator of Vps4 activity in the MVB pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   6.6   6.7e-05      0.24       4     158 ..      25     174 ..      22     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT--SSSSSHHHHHHHHHHHHHH-TTT CS
        Ist1   4 lklaiqrlkllqkkkealakqarrdiaqlLengkeekArirveqliredillelleilelycelllarlsllekqkeldeelkEAvssliyAaprvsel 102
                 l  ai+ l+  + k e++ k   ++i +  +ng+   ++i++++l+r  +++e +  +   ++ +  rl++ ++++++ + +k A  +l    + + +l
  CCE27527.1  25 LDKAIRELDQTRIKLEKQEKTLIQQIKTSAKNGQMGACKIQAKDLVRTRRYIEKFFAMRSQLQKISLRLQTYRTNEQMMQAMKGATMALGSMNKSM-NL 122
                 56688999999**************************************************************99999999999999998888888.89 PP

                 TTHHHHHHHHHTTS-HHHHHHHHTT-T.T--HHHHHH..HS-----HHHHHHHHHHHH CS
        Ist1 103 kELkelrdllaekyGkefakaavenkdngVnekvvkk..lsvktpskelvekylkeIA 158
                 + L+ +   + +   +    +++e+++++ ++ v +   + v+   +e+ve++l+eI 
  CCE27527.1 123 PQLQRIAMEFERE--N----DIMEQRQEMMDDAVDDAmdVGVEEEGDEVVEQVLEEIG 174
                 9999888777553..3....45555444555555444004567777899999999985 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.0   0.00019      0.67      91     208 ..       3     106 ..       1     112 [. 0.74

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00019
   DDE_Tnp_1  91 lldtleekgvdyiirlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfg 189
                 +l++   k++ +  rl+kn+++++k + ++ + r++   ++k+l ++ k+  k     + +  ++ +        + ++l r+R  iE +F+ ++++++
  CCE27527.1   3 ILEWAFGKRMTPAERLRKNQRMLDKAIRELDQTRIKLEKQEKTLIQQIKTSAK-----NGQMGACKI--------QAKDLVRTRRYIEKFFA-MRSQLQ 87 
                 7899999****************995444445555555555555555555555.....444444444........4479**********999.7777** PP

   DDE_Tnp_1 190 ldrlryrglnrveaqllll 208
                   +lr+ +++ +e+++ ++
  CCE27527.1  88 KISLRLQTYRTNEQMMQAM 106
                 *************998765 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   3.1    0.0029        11      25      54 ..      22      51 ..      15      71 .. 0.77
   2 ?    7.6   5.7    0.0007       2.5     130     212 ..      81     170 ..      73     179 .. 0.65
   3 ?    0.6   0.0       0.1   3.6e+02      23      61 ..     161     199 ..     149     201 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0029
   PspA_IM30 25 ekileqairdmqselakarqalaqviarqk 54
                +++l++air+++++  k++++   +i + k
  CCE27527.1 22 QRMLDKAIRELDQTRIKLEKQEKTLIQQIK 51
                79************9999988665555444 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0007
   PspA_IM30 130 elkakkellkarekaakaqeavqkslgkls.......tesatdslerieeKieerearadaaaelaesaqd..ldakleaagiqkevseqvl 212
                 +++++ +++ +r+++ + +e++ ++++++         + + ++l+ri    e++ + ++ ++e  ++a+d  +d  +e++g   ev eqvl
  CCE27527.1  81 AMRSQLQKISLRLQTYRTNEQMMQAMKGATmalgsmnKSMNLPQLQRIAMEFERENDIMEQRQEMMDDAVDdaMDVGVEEEGD--EVVEQVL 170
                 56777777777777777777777766655555554448888889999888777777777766666666666455555555543..3335555 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.1
   PspA_IM30  23 DPekileqairdmqselakarqalaqviarqkqlerkle 61 
                 +   ++eq ++++  +l++a+ +  +++++   +e k++
  CCE27527.1 161 EGDEVVEQVLEEIGVDLGQAMGETPNALGNPALAEGKIA 199
                 455899**************9998888888777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1624  (0.0905795); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1621.01
//
Query:       CCE27528.1  [L=341]
Description: related to adenosine deaminase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.1e-13   48.6   0.0      1e-12   48.1   0.0    1.2  1  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   5.7e-17     1e-12       4     326 ..       8     336 ..       5     338 .. 0.76

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 5.7e-17
                  EEEEEEECCCSS-HHHHHHHHHHHCHT.....SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHTCCCCCCHHHHHHCCCCCHCTTCCCCCCCCS CS
  A_deaminase   4 KvdlHvHldgclnpktllrlakkkgik...eldekvveedeklltlqekfesLkeflydlsvdvlvlhwlievvrllavekakdlakdfvkylevifs 98 
                  K++lH H++ ++ p++l ++  +k+++     + + ++   +++ ++++ e+L +++  +  d+l      e ++     +  d+  d v+yle+++ 
   CCE27528.1   8 KIELHAHFEVNVTPQILHDIWIRKQQAgrkTSPIDPLDLTREEKYTDSNTEELISMISSFLGDLLTD---KESIQYALRKVLVDFFSDNVVYLELRVR 102
                  99*****************976666550002222223333333444444444444444444443333...3444455555667889999********* PP

                  HHHHHHH-GCSTCCHHHHCCCCCCCCCCHCCT-EEEEEECCETT.TCCGHCCCHHHHHHCCCC...CCCCCCCCC-TTSTTGGG...HHHHHCCCCHT CS
  A_deaminase  99 Plfeatagpqlpelevvlkvvdgfdsvedeskvkerlilvksrk.peewseeinelasyyrdy...tvvnldllndekiepasl...flklraeagks 189
                  P        + +  +++l  ++ f+    ++    +l+l+ +r+   ++++ ++ la++ r     +vv++d  +d++     +   f+ ++++a ++
   CCE27528.1 103 PRQTRDLS-AEEYIQIFLDTIKDFEIHFPAMH--TQLLLCVNRShSLAAAKSVVSLATRLRTDegpGVVGIDFCGDPTVRIDGEismFTPAFEQAAEN 197
                  *8755554.34566666666666666666555..455555555537788899999***999887899**********9887766678*********** PP

                  T-EEEEEESSS..S-CHHHHHHHHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-.TTTT-CHHHHHH.TT-EEEE--BSCCCCT CS
  A_deaminase 190 tllltpHaGEa..gglehvveAllllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafl.eyaenPlkefle.rglnvslntDDPlqfg 283
                  +l +t+   E+  +g     ++ll  +  r++H   + +d++ ++   ++   +e+c +  v +g        + +ke++e +g +++l t D  +fg
   CCE27528.1 198 GLGITVSFAETiaTGSRRELDTLLSWNPGRVAHV--IWEDEEAKQEIIKRGLCVELCLSYHVRTGMTSgGFPGHHFKEWAEtEGPKIALVTGDAGVFG 293
                  **********7224444555788888999****5..6799999*********************8654256788899999735889************ PP

                  -SHHHHHHHHHHHHT--HHHHHHHHHHHHHCSSS-HHHHHHHC CS
  A_deaminase 284 ttLieeYaiaaqvfklseedlaelarNsvkqsflsadekkkll 326
                  +  ++eY  +aq+f +++ +++ lar+++++ f +++ek++l 
   CCE27528.1 294 IPPSTEYRLVAQHFNFTSDQMRHLARQGIEAIFGDEKEKQRLR 336
                  ****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2666.20
//
Query:       CCE27529.1  [L=152]
Description: probable mitochondrial receptor complex chain MOM22 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-50  168.5   0.1    7.4e-50  168.3   0.1    1.0  1  Tom22     Mitochondrial import receptor subunit Tom22


Domain annotation for each model (and alignments):
>> Tom22  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.3   0.1   4.1e-54   7.4e-50       1     138 []       1     128 [.       1     128 [. 0.96

  Alignments for each domain:
  == domain 1  score: 168.3 bits;  conditional E-value: 4.1e-54
       Tom22   1 mVkltevedeefqeeqegeeeelaeededeadetdsdseissdedddfdvedEtlldRivALkDiippttRksissavstttslvkstlsfsGkllWvv 99 
                 mV ltevede+fq++q+g++      d+d   +td+dseis  +++d+d++dEtl++R++AL+Di+ppttR +iss++++++s ++++lsfsGk++Wv+
  CCE27529.1   1 MVILTEVEDEHFQDSQTGPD-----VDDD---FTDTDSEIS--NESDYDPSDETLAERLYALRDIVPPTTRGWISSRFNSISSKAWKVLSFSGKSAWVI 89 
                 9************9999998.....3444...79*******..99****************************************************** PP

       Tom22 100 ttSaLLlGvPlaLaieeEqqlvemEkemklqksanella 138
                 ttSaL++GvP+aL+++e+qql +mE+e++++++++ell+
  CCE27529.1  90 TTSALFFGVPFALSFAEDQQLSAMEQEFAMRQTGSELLT 128
                 ************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1113.90
//
Query:       CCE27530.1  [L=1071]
Description: probable glutamate dehydrogenase,NAD(+)-specific [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-62  210.9   0.0    3.6e-62  210.3   0.0    1.3  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
    1.7e-18   65.7   0.0    1.5e-13   49.3   0.0    2.2  2  Bac_GDH          Bacterial NAD-glutamate dehydrogenase
     0.0081   16.0   0.0      0.039   13.8   0.0    2.0  2  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   0.0     6e-66   3.6e-62       1     243 []     681     947 ..     681     947 .. 0.90

  Alignments for each domain:
  == domain 1  score: 210.3 bits;  conditional E-value: 6e-66
                    T--.TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--.SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-HHHHHHHHHCSSSSTTHSH CS
  ELFV_dehydrog   1 GGs.ldrpeaTglGvvyyveemlkklkldslegkrvaisGs.GnvgsyaallltelgakvvavsDssGviydpeGldieellelkeerksvkeykk 94 
                    GG+ +d++++T+l+v+ yv+ +++kl+ld  + ++++++G+ G++gs+++ll    ++k +a++D+sGvi+dp+Gld++el++l+++r++++ey++
     CCE27530.1 681 GGIpHDKYGMTTLSVREYVKGIYRKLDLDPASVRKMQTGGPdGDLGSNEILLG---NEKWTAIVDGSGVIADPNGLDKDELVRLAKKRAMISEYDM 773
                    9****************************9999*******************9...99*************************************9 PP

                    H..........STSTSEEESHHSHH..................HHS....S-SEEEE-.SSTTSB-HHHHTHTH...HTT-SEEE-SSSS-B-HHH CS
  ELFV_dehydrog  95 s..........sekkaeyieneeel..................lel....kvdilvPc.Atqneideenakali...kngvklvvEgANlpttqeA 154
                                        +++++                    l     +d +vPc +++++id  ++++li   k +++++vEgANl++tq+A
     CCE27530.1 774 AkvskdgyrvlC--------EDNNVtlptgevitngtsfrntyH-LrdtgMTDAFVPCgGRPESIDLISVSRLIkdgKTTIPYIVEGANLFITQDA 860
                    888544444442........333555555555677777775540.1444689**********************777779**************** PP

                    HHHHHHTT-EEE-HHHHTTHHHHHHHHHHHHHHCT----HHHHHHHHHHH.HHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHHCT CS
  ELFV_dehydrog 155 keileeagvlvvpdkaaNaGGVtvSslEmlqnlarlswteeevdeklkki.mkeifkavveeaeeykqelvkganiagfekvaeamkaqG 243
                    k +le+ag+++++d++aN+GGVt+SslE+l++   ls+++  ++e+++ + ++    ++++e+ ++ q  + ++++++fe+++++++++G
     CCE27530.1 861 KLRLEAAGCVLYKDASANKGGVTSSSLEVLAS---LSFDDAGFVENMCVDvKTGQAPQFYNEYVREVQAKICENARLEFEAIWREHEETG 947
                    *******************************9...677**********997788999999999999999*******************98 PP

>> Bac_GDH  Bacterial NAD-glutamate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   2.5e-17   1.5e-13     595     809 ..     407     619 ..     395     780 .. 0.77
   2 !   14.4   0.0   8.4e-07     0.005    1059    1104 ..     848     893 ..     840     971 .. 0.81

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 2.5e-17
     Bac_GDH 595 ayakYlrQigltfsqeyieetllkhpeiarllvelFearfdpaleeeeeeeee..ekleeeieeaLd.evasldedrilrrllelieatlRtnfyqkde 690
                  +++ lr  + tf+ +yi e ++++pe+ rll++ F +    a++e+ + + +       +++++++ +va+ +e+ ++ ++  + +a+l+tn+++   
  CCE27530.1 407 KLKRRLR--TETFTPDYILEIIQTYPELIRLLYASFANVHLGAKNEQVAVTPAadVLSDGKLKDKISkTVANEHEEMVMTAFRVFNNAILKTNYFTP-- 501
                 5555444..357899*********************887766666655555443322234677776526999***********************99.. PP

     Bac_GDH 691 dgeakeyislKldpskipelPePrPlfEif.VysprvegvHLRggkvARGGlRW..SDRreDf....Rt...EvLGLvKaQqvKNavIVPvGaKGGFvv 779
                    +k  +s++ldp+ +pe+  Pr l+ +f V  ++  g HLR+ +++RGG+R   S  +e +    R    E  GL  +Qq KN  I   G+KG  ++
  CCE27530.1 502 ---TKVALSFRLDPAFLPEVEYPRRLYGMFlVIGAESRGFHLRFRDISRGGIRIvkSRSKEAYginaRNlfdENYGLASTQQRKNKDIPEGGSKGVILL 597
                 ...6889**********************977899******************7435556766333332333899***********9988889985544 PP

     Bac_GDH 780 krlpkaadreallaegiacYktfirgLLdi 809
                    pk      +++ ++++++++i ++Ld+
  CCE27530.1 598 D--PK------MQDRAQEAFEKYIDSILDL 619
                 3..32......3444566777778888876 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 8.4e-07
     Bac_GDH 1059 vgEGgNLGltQlgRiEyalkggrintDaiDNsaGVdcSDhEVNiKi 1104
                  + EG+NL +tQ +++   ++g  ++ Da  N +GV +S  EV   +
  CCE27530.1  848 IVEGANLFITQDAKLRLEAAGCVLYKDASANKGGVTSSSLEVLASL 893 
                  89***************************************96555 PP

>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.6e-06     0.039      35      97 ..     546     615 ..     535     638 .. 0.81
   2 ?   -1.9   0.0      0.47   2.8e+03      73      93 ..     744     764 ..     743     791 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.6e-06
                      EEEEEEEETT--HH...........HHHHHHHHHHHHHHHTTSS-EEEEEEEES-GGGS-HHHHHHHHHHHHHH CS
  ELFV_dehydrog_N  35 akGGiRfhpsvnld...........evkaLaalmtyKnalvdlpfGGakggvkidpkklseeeleritrrfvre 97 
                       +GGiR+ +s +++           e   La+ +  Kn   d+p GG+kg++ +dpk ++++  ++++++++++
       CCE27530.1 546 SRGGIRIVKSRSKEayginarnlfdENYGLASTQQRKN--KDIPEGGSKGVILLDPKMQDRA--QEAFEKYIDS 615
                      67999999999999999999999999999*********..9***************976543..4555555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.47
                      EEEES-GGGS-HHHHHHHHHH CS
  ELFV_dehydrog_N  73 ggvkidpkklseeeleritrr 93 
                      +gv+ dp++l+++el r+ ++
       CCE27530.1 744 SGVIADPNGLDKDELVRLAKK 764
                      47889**********999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1071 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.49
# Mc/sec: 6535.32
//
Query:       CCE27531.1  [L=221]
Description: probable subtilisin-like serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-19   68.3   1.4    7.2e-19   68.1   1.4    1.1  1  Peptidase_S8  Subtilase family


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   1.4     4e-23   7.2e-19      63     180 ..      31     152 ..       4     194 .. 0.80

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 4e-23
                   ........HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SSTTSB-HH..HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHHHHHHHH. CS
                   x.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  63 e.......HGthvAGiaaanapeegekngvapgakilsvkvldtsggsmetgteliraieeaaedkvdvinmslgestslpktgrsiealainravn 152
                   e       HG+hvAGi+aa+ +++ ++   apg+++++++v++ sg+  +  + li+a+++a +d++ +i  s+g+s+ + + + +    a+ r v 
    CCE27531.1  31 EdpmdcrgHGSHVAGIIAAQ-NNTYGFTCTAPGVSLGAYRVFGCSGSGGN--DVLIAAFNKAYQDGANIITASIGGSSGWAQDV-WAD--AVSRIV- 120
                   03333445************.*********************88887775..9**********************777666655.666..******. PP

                   CCT-EEEEE--SS-T-HH....EEE-TTCEEC CS
                   xxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
  Peptidase_S8 153 kkgvlvviSaGNngktgs....slqagspvgt 180
                   +kgv  v+SaGN+g++g     s  +g+ v++
    CCE27531.1 121 DKGVPCVVSAGNEGDQGIfyanSPADGQHVSA 152
                   99************888866654444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1633.69
//
Query:       CCE27532.1  [L=250]
Description: probable subtilisin-like serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-16   60.5   0.7    1.9e-16   60.2   0.7    1.2  1  Peptidase_S8  Subtilase family
    3.8e-09   37.2   0.0    7.1e-09   36.4   0.0    1.4  1  fn3_5         Fn3-like domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.7   2.2e-20   1.9e-16     181     282 ..      50     146 ..       8     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 2.2e-20
                   TTTST.TCEEEEEESTTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHH CS
                   xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 181 pstsk.nvitvgayttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraa 276
                   p++++  ++t +++ + g ++ fSs Gp++d + kp+ +a Gg ++st +r +       sy   sGTSmA+P aag++Al+++   ++tp++++ +
    CCE27532.1  50 PKNAElRILTANNTMSGGAVSAFSSWGPTFDMRSKPQYSAIGGTVLSTFPRAK------GSYAVPSGTSMACPQAAGIIALIRQVRGAITPQEIEYL 140
                   333334677888888**********************************9999......3399********************************99 PP

                   HHCCS- CS
                   xxxxxx RF
  Peptidase_S8 277 llntAq 282
                   l  + +
    CCE27532.1 141 LSSNSN 146
                   987765 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   7.9e-13   7.1e-09      10      96 ..     170     250 .]     162     250 .] 0.86

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 7.9e-13
       fn3_5  10 fsftltlkNtsnkaltykvsandvlTdladkeegklilkaaspeikeaaltfetskvtvpAnssktvtvtldlpsdakkkngyfveG 96 
                  s ++tl+Nt+ k++tyk++++++ T +    +  + ++ ++     a+l+f++ ++t++ +++kt++v +++p+++++k+  +++G
  CCE27532.1 170 LSLEFTLRNTDRKPATYKITHVPAITMYS--LQPFPNEAVHAA----ATLQFSETSITLRGGQTKTIKVSATPPEGLDAKRLALWSG 250
                 577899*********************99..566655555553....69******************************99988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1887.32
//
Query:       CCE27533.1  [L=917]
Description: uncharacterized protein CPUR_01007 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-05   23.7   0.0    6.6e-05   22.4   0.0    1.7  1  SH3_1     SH3 domain
  ------ inclusion threshold ------
      0.046   13.6   0.0      0.096   12.6   0.0    1.6  1  SH3_9     Variant SH3 domain


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   7.3e-09   6.6e-05       2      48 .]     264     310 ..     263     310 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 7.3e-09
                 ESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   2 AlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 Al+ + a+ ++  + +kGD++ +l++s++ Ww +r+  +   G+ P+
  CCE27533.1 264 ALHTFVATVEGQANATKGDTMVLLDDSNSYWWLVRVVKDSSIGYLPA 310
                 7888888889999999********************99999999996 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.1e-05     0.096      16      46 ..     279     311 ..     264     314 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
       SH3_9  16 qrGDvitvieesedgWlegs..ltGrtGlvPan 46 
                  +GD+ +++++s+++W++++  ++++ G++Pa 
  CCE27533.1 279 TKGDTMVLLDDSNSYWWLVRvvKDSSIGYLPAE 311
                 58*****************9766********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1248  (0.0696079); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.43
# Mc/sec: 6361.73
//
Query:       CCE27534.1  [L=131]
Description: probable 60S ribosomal protein L32 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-49  166.6   0.5    1.8e-49  166.6   0.5    1.4  2  Ribosomal_L32e  Ribosomal protein L32


Domain annotation for each model (and alignments):
>> Ribosomal_L32e  Ribosomal protein L32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.35   6.2e+03      87      98 ..       2      13 ..       1      14 [. 0.85
   2 !  166.6   0.5     1e-53   1.8e-49       1     108 []      15     122 ..      15     122 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.35
                    S-HHHHHHHHHH CS
  Ribosomal_L32e 87 Vsskkrkeiver 98
                    V +kk+  iv++
      CCE27534.1  2 VAAKKHVPIVKK 13
                    789999999986 PP

  == domain 2  score: 166.6 bits;  conditional E-value: 1e-53
                     ------TTTTT-TTS-SS------TT-TTTTT-TTS-----GGG---TTTTT--TTS-EEEEESSGGGGTT--TTTE..EEEE-TTS-HHHHHHH CS
  Ribosomal_L32e   1 tkkFirhqsdryvklkeswrkprGidnrvrrrfkgqilmpkiGYgspkktrgllpsGfkkvlVhnvkeLevllmenksyaaeiahsVsskkrkei 95 
                     t +Firhqsdr++ l+ swrkp+Gidnrvrrrf+g+++mp+iGYg++kktr+++psG+k++lV+nv+++e l+m+n++yaaeia++Vs++kr++i
      CCE27534.1  15 TARFIRHQSDRFKCLNPSWRKPKGIDNRVRRRFRGTQAMPSIGYGTNKKTRYMMPSGHKSFLVNNVQDVELLMMHNRTYAAEIASAVSARKRIDI 109
                     579******************************************************************************************** PP

                     HHHHHHTT-EBSS CS
  Ribosomal_L32e  96 verAaelgikVtN 108
                     ++rA++lg+kVtN
      CCE27534.1 110 IARAKQLGVKVTN 122
                     ************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1118.22
//
Query:       CCE27535.1  [L=144]
Description: probable RPS16B-ribosomal protein S16.e [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-33  116.3   0.1    1.2e-33  116.1   0.1    1.0  1  Ribosomal_S9  Ribosomal protein S9/S16


Domain annotation for each model (and alignments):
>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.1     7e-38   1.2e-33       1     121 []      12     144 .]      12     144 .] 0.92

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 7e-38
                   EECTTEEEEEEEEESSSEEEETTEECCHHSTTSCHHHHHCHHHHHTTTSS.S.EEEEEEEESS-HHHHHHHHHHHHHHHHHHHHH.....HHHHHHC CS
  Ribosomal_S9   1 GrrKesvArvwikegkgkilvngksleeYfkeeaarekvleplkltgllg.k.fdvfvkvkgGGlsgqaeAirlgiaraLvalek.....eekkeLk 90 
                   G++K+++A +++k+g+g i+vng++l+  ++ e  r kv+epl ++gl + + +d++v+v+gGG+++q++Air++ia+ L+a+++     ++k++Lk
    CCE27535.1  12 GKKKTATAVAHCKAGRGLIKVNGRPLSL-VQPEILRFKVYEPLLVVGLDKfSlVDIRVRVTGGGHTSQVYAIRQAIAKSLIAYYQkfvdeHSKNTLK 107
                   89**************************.877***************9886359*****************************98788753477777 PP

                   ......TCCCTS-B--------TTSSCTTB----S-- CS
  Ribosomal_S9  91 ......kaglltrDpRvvErkKtgkkkARkkyqwskR 121
                         +++ll++D+R++E+kK+g ++AR++yq+s+R
    CCE27535.1 108 qalvqfDRTLLVADNRRCEPKKFGGPGARARYQKSYR 144
                   6666888****************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1217.10
//
Query:       CCE27536.1  [L=525]
Description: uncharacterized protein CPUR_01010 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-44  152.6   0.0    2.9e-44  151.9   0.0    1.3  1  AAR2      AAR2 protein


Domain annotation for each model (and alignments):
>> AAR2  AAR2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   0.0   1.6e-48   2.9e-44       3     351 ..     117     471 ..     115     472 .. 0.85

  Alignments for each domain:
  == domain 1  score: 151.9 bits;  conditional E-value: 1.6e-48
        AAR2   3 atlllldlpegtefGiDlksftvgpkFkGikmiPpGvHfvyysaasstselslrsgfffy..fkkgevivkkwdkeeEdLveelseeeaerykanlksi 99 
                 ++ l+ dlpe  ++G D++sft +  F G++++P+G+Hf++++    +s ++ r g ++    + ++v+v +wdk +E+L e + ++ea+++++n+   
  CCE27536.1 117 DVALIIDLPEVFTVGYDALSFTAQH-FGGVRDVPEGPHFFWTTH---SSGVAARAGVWLLgsQSHDRVHVVQWDKYNENLTE-ALTSEARNHAENVP-- 208
                 688999***************8765.******************...999*********96455556***************.677899*******8.. PP

        AAR2 100 efdkkLapYpsdasek.................WksltshIteellerilpesgkisstaelasseseaesekkkawskssseeskgssakrdeeelps 181
                 +++ kL+pYp  +                    W +lt +It +ll+ri++ +++                  +   + ++ +   + sa+++ e+l  
  CCE27536.1 209 NIHAKLIPYPDPSKVGgavgqlpasrieaniaiWAQLTTCITSSLLDRITGPQSGG-----------------WIVHTLDRAQGIAQFSAEVQLERLVP 290
                 78889*****99754477778888888999999******************33333.................33333344444445668888999989 PP

        AAR2 182 lkskegtelrFteiplkrtwpegatgrelTkaalDkSwaLedllrksssgd.eaelLgElqfaFvlflllqnyssfeqWkrll.sLlltceeaikerpd 278
                 +k+ ++++l+Ft     r +  +++g  ++  a+D +++L + +++ s++  +++l+gElqf+Fv+ +ll n  +++qW  ++ +Ll++++ +++++p 
  CCE27536.1 291 SKNLQQRPLKFTFERTTRMFSLDSVGPARSLEAIDPTKYLLSQIEDPSNDLvYEDLIGELQFSFVVGMLLGNDACLDQWWFMVlKLLVKSHLLLEKQPI 389
                 9999999999****999******************99999999999877448**************************9887627************** PP

        AAR2 279 lfvkflrvLraqLkelpe....flsdivs.kdnfLkkllkkfrenlee.....eeeeeeeesklkkelekLekllkekfgWdl 351
                 l++ + r+L+aq     +    +++d v+ +   L+  l  +++++ee     e+  +  + ++ +++ +Le++l+ ++gWdl
  CCE27536.1 390 LVAGLWRALTAQVTFGTKwletTIMDPVEqRCRDLRISLIIYKRRMEEflqsdENLISPSHLAVGTAFSRLESVLT-ELGWDL 471
                 ****************99877777775554445788888888888888876554455666788*************.*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3743.56
//
Query:       CCE27537.1  [L=482]
Description: uncharacterized protein CPUR_01011 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-16   60.3   0.1    5.3e-16   58.8   0.1    1.8  1  MULE             MULE transposase domain
  ------ inclusion threshold ------
      0.026   13.4   0.4      0.063   12.1   0.1    1.7  2  Transposase_mut  Transposase, Mutator family
        1.1    8.4   3.2        4.5    6.4   0.0    2.1  2  Med3             Mediator complex subunit 3 fungal


Domain annotation for each model (and alignments):
>> MULE  MULE transposase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.1   8.8e-20   5.3e-16      15      96 .]       1      84 [.       1      84 [. 0.93

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 8.8e-20
        MULE 15 lplltvvgvddngqlvplafalveseneesyewllq...elleevsgqrspkviitDkekallnaleevfpeakhrlClfHiakn 96
                +pll++v+ +++++++ +a+ +++se++++yew+l    +ll ++ +   p+v++tDk+ al+na+++ fp ak ++C +H++kn
  CCE27537.1  1 MPLLNIVAGTAMNTTIQVALCFMTSETQADYEWALLqlrRLLYDARI-PLPNVVVTDKDVALINACKDAFPAAKALICRWHVNKN 84
                79*******************************99967666667777.899********************************98 PP

>> Transposase_mut  Transposase, Mutator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.1e-05     0.063     230     279 ..      52     101 ..      42     128 .. 0.87
   2 ?   -2.9   0.0      0.38   2.2e+03     307     334 ..     241     268 ..     213     274 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.1e-05
  Transposase_mut 230 lvvsDahkGLvkaisavfpeaavQrCrvHllrnllakvpkkkadkvaeal 279
                      +vv+D+   L +a + +fp+a+   Cr H+ +n++ak+ k  +d +++++
       CCE27537.1  52 VVVTDKDVALINACKDAFPAAKALICRWHVNKNVVAKAMKPFNDAFSDDV 101
                      79************************************999888887765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.38
  Transposase_mut 307 pkvaelldeaaedvlaflafpeqirrki 334
                        + + l +++ d+l+f++  ++i+   
       CCE27537.1 241 HLIKSNLCNSTSDLLTFYKHIKNIWMAQ 268
                      5567777888889999999999999765 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   3.3     0.086   5.1e+02     201     235 ..     105     139 ..      78     168 .. 0.52
   2 ?    6.4   0.0   0.00075       4.5     113     156 ..     380     424 ..     374     434 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.086
        Med3 201 kPrqtkkaaakaaakaqaqaqaqaqaqqqvlanpn 235
                   rq+ +a a+aaa+a   a    qa q  ++ p+
  CCE27537.1 105 AARQAGRAVADAAAVAASAAFPSTQAPQAPVSAPD 139
                 44444444444444444444444444333233332 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00075
        Med3 113 ksfqlLenLsaynkkGkasaskasvvnst.pssaastPtttatPg 156
                 + + +Le+L +  ++G+  +s+a++++s+ p+    tP +   P 
  CCE27537.1 380 RPMPILEPLVTVTRRGRPQGSTATISASQaPTDGNDTPRGRGRPR 424
                 66779********************98852677778998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3832.27
//
Query:       CCE27538.1  [L=374]
Description: related to putative transcriptional regulator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.6   0.5       0.37   11.4   0.5    1.6  1  FOXP-CC   FOXP coiled-coil domain
       0.19   12.3   0.2       0.41   11.2   0.2    1.6  1  zf-C2H2   Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   4.2e-05      0.37       6      41 ..     200     235 ..     197     256 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.2e-05
     FOXP-CC   6 vCkWPgCekvledveeflkhlnseHalddkstaqlr 41 
                  C W gCek+  +++++ +h+  + + ++++ ++++
  CCE27538.1 200 KCGWNGCEKAYGTLNHLNAHVTMQSHGQKRTPEEFK 235
                 6********************988887777766655 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   4.6e-05      0.41       1      21 [.     199     221 ..     199     225 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.6e-05
                 EEET..TTTEEESSHHHHHHHHH CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHir 21 
                 ykC+  +C k + +  +L++H  
  CCE27538.1 199 YKCGwnGCEKAYGTLNHLNAHVT 221
                 9********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1342  (0.0748508); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 2988.09
//
Query:       CCE27539.1  [L=32]
Description: uncharacterized protein CPUR_01013 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        2.4    8.6  12.5        2.5    8.5  12.5    1.0  1  CENP-B_dimeris  Centromere protein B dimerisation domain
        5.7    6.6  12.4        5.3    6.7  12.4    1.0  1  Cwf_Cwc_15      Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  12.5   0.00028       2.5      15      33 ..       8      26 ..       3      31 .. 0.38

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00028
  CENP-B_dimeris 15 esdeeeeeeeedeededee 33
                    +sd++ +++++d++d+d++
      CCE27539.1  8 DSDNNSNDDDDDDDDNDDN 26
                    3333333333333333222 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  12.4   0.00059       5.3     127     147 ..       7      27 ..       3      32 .] 0.51

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00059
                 --------------------- CS
  Cwf_Cwc_15 127 eesdddsdsdsdddddedeta 147
                 ++sd++s++d+ddddd+d+++
  CCE27539.1   7 TDSDNNSNDDDDDDDDNDDNK 27 
                 344455555555555545443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 282.15
//
Query:       CCE27540.1  [L=562]
Description: probable RNA helicase dbp2 (DEAD box protein) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-49  165.7   0.0    1.8e-47  161.4   0.0    2.2  2  DEAD            DEAD/DEAH box helicase
    2.3e-32  111.6   0.1    1.2e-31  109.3   0.0    2.1  2  Helicase_C      Helicase conserved C-terminal domain
    1.1e-05   25.5   0.0    7.4e-05   22.8   0.0    2.1  2  ResIII          Type III restriction enzyme, res subunit
    0.00055   18.8   0.1      0.063   12.0   0.0    2.3  2  UTP25           Utp25, U3 small nucleolar RNA-associated SSU 
     0.0038   16.5   0.2     0.0056   15.9   0.2    1.2  1  ERCC3_RAD25_C   ERCC3/RAD25/XPB C-terminal helicase
     0.0092   16.3   0.0        3.9    7.8   0.0    2.4  2  AAA_19          AAA domain
  ------ inclusion threshold ------
      0.019   15.1   0.0      0.034   14.3   0.0    1.4  1  Helicase_C_2    Helicase C-terminal domain
      0.072   12.9   0.2       0.13   12.2   0.2    1.4  1  DUF5335         Family of unknown function (DUF5335)
       0.19   11.6   0.0       0.41   10.5   0.0    1.5  1  PAZ_siRNAbind   PAZ domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   0.0   8.9e-51   1.8e-47       1     174 [.     175     344 ..     175     346 .. 0.96
   2 ?    2.0   0.0     0.075   1.5e+02      35     104 ..     386     455 ..     374     466 .. 0.70

  Alignments for each domain:
  == domain 1  score: 161.4 bits;  conditional E-value: 8.9e-51
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldn 96 
                 t+iQ++ +p +l+g+d+++ aeTGsGKTl +++p + ++  +      +gp +l+++PtreLa q+ ++++kf+   ++r  +++ggv++  q+++l++
  CCE27540.1 175 TAIQSQGWPMALSGRDMVGIAETGSGKTLTYCLPSIVHINAQpllAPGDGPIVLVLAPTRELAVQIQQEITKFGRSSRIRNTCVYGGVPKGPQIRDLSR 273
                 79**********************************9998879998999***************************99*******************99 PP

                 TCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  97 gvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 gv++ ++tpgrl+d+l+ gk nl++v++lVlDEadr+ld+gf+++i++i++q+       + +rq+++ SAT+pk+v+
  CCE27540.1 274 GVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQI-------RPDRQTLMWSATWPKEVR 344
                 9****************************************************.......35678*********9886 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.075
                 HHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH...HTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxx RF
        DEAD  35 vlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl...dng.vdivvgt 104
                 ++q++ +t +++++k+li + t+  a ++ + l++ + +    +l+i g++++++   +l   + g   i+v+t
  CCE27540.1 386 MIQHLEKTMENKENKILIFVGTKRVADEITRFLRQDGWP----ALSIHGDKQQNERDWVLdqfKTGkSPIMVAT 455
                 678887777788889999999999999999999998885....3344444443333333322222246666665 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.1   2.1e+03       8      59 ..     321     373 ..     317     381 .. 0.69
   2 !  109.3   0.0     6e-35   1.2e-31       5     111 .]     385     493 ..     381     493 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.1
                 HHHHHTTTTSEEEEEESSHH.HHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHH CS
  Helicase_C   8 ellkleeeggkilifvntid.rlek.vklllekkgikvavlhgelpqnereeil 59 
                 +++++ + ++++l+ + t+  ++   ++ +l+ + i+v +   +l++n+r+  +
  CCE27540.1 321 KIIEQIRPDRQTLMWSATWPkEVRAmASDFLTDF-IQVNIGSMDLSANHRITQI 373
                 4444558888999999998874433444555566.8888888899999998655 PP

  == domain 2  score: 109.3 bits;  conditional E-value: 6e-35
                 HHHHHH..HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHH CS
  Helicase_C   5 allell..kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyi 101
                 ++++ l  ++e++++kilifv t++ +++++ +l++ g  ++ +hg+ +qner+ +l+qf+ g+s +++atdva+rGid+ ++++V n+d+p n ++yi
  CCE27540.1 385 KMIQHLekTMENKENKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYI 483
                 55555556679**************999967777888************************************************************** PP

                 HHHTTSSSTT CS
  Helicase_C 102 qriGRtgRag 111
                 +riGRtgRag
  CCE27540.1 484 HRIGRTGRAG 493
                 ********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.7e-08   7.4e-05      31     168 ..     195     338 ..     188     341 .. 0.78
   2 ?   -0.3   0.0      0.48   9.6e+02      58      85 ..     374     405 ..     362     450 .. 0.60

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.7e-08
                 ESTTSTHHHHH.HHHHHHH-S..........-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--.......-SEEEEEHHHHHHTH. CS
      ResIII  31 maTGtGKTlva.aklierllkkgkee.....kflflvprkslleqtleefkkflseayke....igkkvsgdkkkakekdstnkkilvttiqsldadse 119
                 ++TG+GKTl++ +  i ++  +          +l+l+p+++l  q ++e++kf  + + +     g++ +g + +     s   +++++t  +l   + 
  CCE27540.1 195 AETGSGKTLTYcLPSIVHINAQPLLApgdgpIVLVLAPTRELAVQIQQEITKFGRSSRIRntcvYGGVPKGPQIR---DLSRGVEVCIATPGRLIDML- 289
                 68*********76677766665444488888************************99876555444444444444...489999**********9999. PP

                 .......HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS CS
      ResIII 120 eeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTAT 168
                     e  +    r  +++ DEa r+ ++    ++r+i+e++++    l  +AT
  CCE27540.1 290 ----EAGKTNLRRVTYLVLDEADRMLDMgfePQIRKIIEQIRPdRQTLMWSAT 338
                 ....667777777889***********97766999999999764555666777 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.48
                 EEEESSHHHHHHHHHHGGGGTGG........G CS
      ResIII  58 lflvprkslleqtleefkkflseayke....i 85 
                 + +v +++  ++++++++k+++++ ++    +
  CCE27540.1 374 VEVVSENEKRDKMIQHLEKTMENKENKilifV 405
                 44555555555555555555555554433332 PP

>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0063        12      76     104 ..     225     252 ..     223     258 .. 0.86
   2 !   12.0   0.0   3.2e-05     0.063     317     416 ..     384     482 ..     354     508 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0063
       UTP25  76 pkvLillptreaalevvelllklleaetq 104
                 p vL+l+ptre a+++ ++++k+  ++ +
  CCE27540.1 225 PIVLVLAPTRELAVQIQQEITKFGRSS-R 252
                 77*******************997776.4 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.2e-05
       UTP25 317 ekilpqlkk.ssskssgiliyipsyfdfvrvrnylkeekvsfaaiseysskkevsraRelFfkgkkkvlLyteRlhffrRykikgvkkvilYklPenpe 414
                 +k++++l+k  ++k+++ili++ +      ++++l+++    ++i+  ++++e     ++F++gk  +++ t+ +   r  +++++ +v+ Y+ P+n+e
  CCE27540.1 384 DKMIQHLEKtMENKENKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVAS--RGIDVRNITHVLNYDYPNNSE 480
                 57888888844578899*******99999********************************************885..99*****************98 PP

       UTP25 415 fy 416
                  y
  CCE27540.1 481 DY 482
                 76 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   2.8e-06    0.0056      38     154 ..     376     495 ..     345     524 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.8e-06
  ERCC3_RAD25_C  38 lyvmnpnkfracefLikyhekrgDkiivfsDnvfaLkeyakklkk.....pyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvl 128
                    ++  n ++ +++++L k+ e++++ki++f        e+++ l++       i+G+ +++er  +l++fk+ +    ++   v+   iD+ + + +
     CCE27540.1 376 VVSENEKRDKMIQHLEKTMENKENKILIFVGTKRVADEITRFLRQdgwpaLSIHGDKQQNERDWVLDQFKTGK-SPIMVATDVASRGIDVRNITHV 470
                    34457788899******************99988888888888763332247******************985.56677789********999999 PP

  ERCC3_RAD25_C 129 iqisshfgsrrqeaqrlGriLrakkk 154
                    +  +    s      r+Gr  ra ++
     CCE27540.1 471 LNYDYPNNSE-DYIHRIGRTGRAGAN 495
                    8888777765.456788887777655 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0     0.006        12      10     112 ..     188     308 ..     178     335 .. 0.57
   2 !    7.8   0.0     0.002       3.9      30      75 ..     386     431 ..     383     528 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.006
      AAA_19  10 ekvllvtaGpGtGKTrv..lkhivallvelggvkp...eeillvaftgrAakelrerlaalgae...atTiHrlal................ldfddll 84 
                  + ++ +a  G+GKT +  l  iv++  +   ++p     +l++a+t+  a +++++++++g++    +T+ + ++                +++ ++l
  CCE27540.1 188 GRDMVGIAETGSGKTLTycLPSIVHINAQPL-LAPgdgPIVLVLAPTRELAVQIQQEITKFGRSsriRNTCVYGGVpkgpqirdlsrgvevcIATPGRL 285
                 5666778999****86532444444444433.223454678999*******999999977766655533333333355555555554444432222222 PP

      AAA_19  85 tealelleeaeeekklqeeellivDEfq 112
                      +le  + +++l++ ++l+ DE+ 
  CCE27540.1 286 ---IDMLE--AGKTNLRRVTYLVLDEAD 308
                 ...22222..355666555588888874 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.002
      AAA_19  30 ivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrl 75 
                 ++++l+++ + k ++il+   t+r a+e++  l++ g +a  iH+ 
  CCE27540.1 386 MIQHLEKTMENKENKILIFVGTKRVADEITRFLRQDGWPALSIHGD 431
                 7999*****************************999999**99975 PP

>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.7e-05     0.034       2      81 ..     391     465 ..     390     481 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
  Helicase_C_2   2 lellevvpggvlvffpSyklleevverlkeeleskkieifveekeesrekvleeykekkkkgaillavcrGklsEGidfs 81 
                    + +e +++++l+f+   ++ +e++++l++ + +  ++i   +++++r+ vl+++k+  +k  i++a+     s Gid++
    CCE27540.1 391 EKTMENKENKILIFVGTKRVADEITRFLRQDG-WPALSIHGDKQQNERDWVLDQFKT--GKSPIMVATD--VASRGIDVR 465
                   5789999***********************98.6677888887999***********..*********9..9999**987 PP

>> DUF5335  Family of unknown function (DUF5335)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   6.3e-05      0.13      54     110 ..     351     409 ..     337     413 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.3e-05
     DUF5335  54 kddavevavggereeleHliakPaevy..veeedgelesleiededgektlitfeepea 110
                   d ++v++g+ +   +H+i + +ev   +e+ d++++ le + e++e++++ f   + 
  CCE27540.1 351 LTDFIQVNIGSMDLSANHRITQIVEVVseNEKRDKMIQHLEKTMENKENKILIFVGTKR 409
                 5799*******9999***********964588899******999999999999977665 PP

>> PAZ_siRNAbind  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0002      0.41      11      53 ..     120     162 ..     113     168 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0002
                    HHHTTT-HHHHHHHHHHTTTT-EEEETTSTT--EEEE-BSTTS CS
  PAZ_siRNAbind  11 welvnkdpkeleeflmthkenlmlkdiasplktvykpcfeeyt 53 
                     e+ n+ p e+eef   hk  +   d+  p++t  + +f  y 
     CCE27540.1 120 PEVTNRSPAEVEEFRRKHKMTIAGSDVPKPVETFDEAAFPRYV 162
                    6899*****************************9999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       974  (0.0543254); expected 358.6 (0.02)
Passed bias filter:                      772  (0.0430587); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 3917.94
//
Query:       CCE27541.1  [L=580]
Description: probable NDE1-mitochondrial cytosolically directed NADH dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-53  180.7   0.0    4.5e-53  180.4   0.0    1.1  1  Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
    1.2e-11   44.9   0.0    2.5e-10   40.8   0.1    2.7  2  Pyr_redox    Pyridine nucleotide-disulphide oxidoreductase
     0.0009   18.6   0.4       0.51    9.5   0.1    2.3  2  Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.053   13.6   0.8       0.11   12.5   0.8    1.4  1  DHR10        Designed helical repeat protein 10 domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.4   0.0     1e-56   4.5e-53       2     294 .]     117     451 ..     116     451 .. 0.93

  Alignments for each domain:
  == domain 1  score: 180.4 bits;  conditional E-value: 1e-56
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC.... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias...evvkklnqgielllgeevvkidpgkkkvklekkke.... 92 
                   +v++G G++ +a+ ++l + +++v++v + ++ +++++ll++  +g+ e+++i++     ++  ++ ++++ + e+ +idp++k +k+ +++e    
   CCE27541.1 117 TLVILGTGWGSVALLKKLDTENYNVIVV-SPRNYFLFTPLLPSCTTGTIEHRSIMEpvrAILRHKKAAVKFYEA-EASSIDPERKVIKIVDNSEikga 212
                  58**************************.99999999*********************7444445566999999.*********99999888889999 PP

                  TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..................SEEEEES-SHHHHHHHHHHHHHT-...... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxx...... RF
  Pyr_redox_2  93 gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp..................krivvvGgGyiGvElAaalaklgk...... 166
                   +e++i yd lv+  G+++ ++gipGv en ++l +++d+a+++++k ++                   ++vvvGgG++GvE+A++l ++ +      
   CCE27541.1 213 ISETEIPYDMLVVGVGAENATFGIPGVRENSCFL-KEIDDAQRIRKKIMDcvetaafkdqtpeevnrlMHMVVVGGGPTGVEFAGELQDFFEedikkl 309
                  6778******************************.***************************999988899****************88866688889 PP

                  ........EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCE....EEESEEEE-S-EEES-HHCS..HCCT- CS
                  ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxx..xxxxx RF
  Pyr_redox_2 167 ........evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgee....idadlvvvavGvrpstelle..eklgl 250
                          +vtl+ea++++l+++ k+l ++ e+ l++e++++k++t+vk++++ + ++e    dg +    i++ l+v+a+G   ++  ++   ++  
   CCE27541.1 310 vpdisnrfRVTLIEALPNVLPSFSKQLIDYTENTLREEKIDIKTKTMVKRVTETTVEAEISRPDGGKerieIPYGLLVWATGNAVRPIVRDlmSRIPA 407
                  9*****999*******************************************9999888777777777899***********9999999989899999 PP

                  EEEETTEEE--TTSBES.STTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 251 elderggivvdeflrtn.vpgiyaiGDvaggkggpelaqaAvqqG 294
                  + d+r+g+ v+e+l ++   +i+aiGD+a   g   +aq+A+q+G
   CCE27541.1 408 QKDSRRGLAVNEYLVVQgARDIWAIGDCA-VAGYAPTAQVASQEG 451
                  99************9988***********.889999******998 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.17   7.6e+02       2      40 ..     118     158 ..     117     192 .. 0.82
   2 !   40.8   0.1   5.6e-14   2.5e-10       1      70 [.     281     364 ..     281     370 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.17
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS..TTSSH CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll..rllDe 40 
                 +v++G G+  + l + l   + +V vv  ++ +l  +ll+ 
  CCE27541.1 118 LVILGTGWGSVALLKKLDTENYNVIVVSPRNYFLftPLLPS 158
                 7999****9999999999999********999996666555 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 5.6e-14
                 EEEEECSSHHHHHHHHHH........HHTT........SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEET CS
   Pyr_redox   1 kvvvvGgGyiglElAgal........aelg........kkVtvversdkllrllDeeaskilqeklekngievllntkveeiegse 70 
                 ++vvvGgG +g+E+Ag+l        +  +         +Vt++e+ +++l+ + +++ +++++ l++++i++ ++t v+++++++
  CCE27541.1 281 HMVVVGGGPTGVEFAGELqdffeediK--KlvpdisnrFRVTLIEALPNVLPSFSKQLIDYTENTLREEKIDIKTKTMVKRVTETT 364
                 79****************777775552..04465554459******************************************9776 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00076       3.4       1      19 [.     283     301 ..     283     310 .. 0.89
   2 !    9.5   0.1   0.00011      0.51      81     134 ..     334     392 ..     311     402 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00076
  Pyr_redox_3   1 iIiGaGPaGlaaaielkka 19 
                  +++G+GP G+++a el+++
   CCE27541.1 283 VVVGGGPTGVEFAGELQDF 301
                  79**************986 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00011
  Pyr_redox_3  81 kealeYlrevaksfelpiklfeeVesvkkedegfevetske...tyeAkk..viiAtGe 134
                  k++ +Y+++  ++++++ik++++V++v+++  + e++   +    +e ++  +++AtG 
   CCE27541.1 334 KQLIDYTENTLREEKIDIKTKTMVKRVTETTVEAEISRPDGgkeRIEIPYglLVWATGN 392
                  67889999999999999999999999999877777765432222444443336777775 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.8   2.5e-05      0.11      47      91 ..     459     503 ..     453     505 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
       DHR10  47 aelakleeakkklkelrdaleekeielrelerkeerlqrqlenae 91 
                 +++a++e  +++++el+ +++ +  ++++  +++erl++ql + +
  CCE27541.1 459 NNMARTENHEARIQELSSQMNLQAGNSADTAHEIERLEKQLRKIK 503
                 689**************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 4032.46
//
Query:       CCE27542.1  [L=907]
Description: uncharacterized protein CPUR_01016 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 6172.80
//
Query:       CCE27543.1  [L=470]
Description: probable thiamin biosynthesis protein thi-4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-70  235.5   0.2    7.4e-70  235.1   0.2    1.2  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
    1.6e-32  113.0   2.8    2.3e-18   66.8   0.4    2.4  2  TENA_THI-4    TENA/THI-4/PQQC family
    5.8e-06   25.8   0.1    4.7e-05   22.8   0.1    2.2  1  PfkB          pfkB family carbohydrate kinase
  ------ inclusion threshold ------
       0.17   11.6   0.2       0.39   10.4   0.2    1.6  1  DUF2518       Protein of function (DUF2518)


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.1   0.2   1.7e-73   7.4e-70      23     246 .]       1     246 [.       1     246 [. 0.95

  Alignments for each domain:
  == domain 1  score: 235.1 bits;  conditional E-value: 1.7e-73
                   EEEEEEEEEEETTCEEEEEE--HHHHHHHHHHHHHTS--SEEEE-S--SHHHHHHHHHHHHHTTS.SEEEE---SSCTSSSBSSHHHHHHHHHHTGG CS
  Phos_pyr_kin  23 msvitaltaqntkgvkevhplpaelveaqleavledvkvdavKiGmlasaeiievvaeklkkykv.pvVlDPVmvaksgselleeeavealkeeLlp 118
                   m++ taltaqnt+gv++vh +p+++ve+q+ea++edv+vd+vK+Gmla a++ie+va+++ k++v  +V+DPVmv++sg++ll +ea++ l ++Llp
    CCE27543.1   1 MTATTALTAQNTTGVRAVHVVPSSFVEEQIEACFEDVGVDVVKTGMLAAASTIEMVARQVVKHSVsSLVVDPVMVSTSGAQLLPHEAIHELSRHLLP 97 
                   899*********************************************************888998******************************* PP

                   G-SEEE-BHHHHHHHHT.........---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-S...........SSEEEEEEEE.TSSEEEEEEEE----S CS
  Phos_pyr_kin 119 latvitPNlpEaeaLlg.........ekikteedmkeaakkllklgakaVlikGghleg...........eeavvtdvly.dgeeveeleaerietk 194
                   l+ v+tPN+pEa+ +l           + ++++d++++++++++lg k+Vl+kGghl+            +++vv+dvl+  +++v ++e+++ +++
    CCE27543.1  98 LTMVLTPNIPEAKLILAengaspsvyDNPQSVADVENMGRQIQALGPKWVLVKGGHLPFrsdmtvaqvddDKHVVVDVLVgPDGQVLRVESPYQASS 194
                   *************98885666554444455899************************8889********999999********************** PP

                   --BTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHCG-BSTSSS-B-- CS
  Phos_pyr_kin 195 nthGtGCtlssaiaaelakgesleeAvkkAkeyvteaikealelgkgagpvn 246
                   +thGtGC+l+sai a +a+g +++ Av++A +y+++ i+ a +lg+g+gp+n
    CCE27543.1 195 STHGTGCSLASAISAGIAQGVNIPSAVRSACRYIEAGIRTAPSLGRGNGPLN 246
                   **************************************************86 PP

>> TENA_THI-4  TENA/THI-4/PQQC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.1   2.1e-16   9.5e-13       2      43 ..     269     310 ..     268     312 .. 0.94
   2 !   66.8   0.4   5.2e-22   2.3e-18      65     168 ..     309     414 ..     308     419 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 2.1e-16
                 HHCHHHHHHHHCSHHHHHHHTT-S-HHHHHHHHHHHHHHHHH CS
  TENA_THI-4   2 aqlrpiwkeyinHpFvkalakGtlpreqfqayviqdylylkn 43 
                 ++++  w++y++HpFv al +G+lp ++f++y+iqdylyl n
  CCE27543.1 269 PDVEHVWRQYVHHPFVMALGDGSLPLDSFKGYIIQDYLYLSN 310
                 67899***********************************98 PP

  == domain 2  score: 66.8 bits;  conditional E-value: 5.2e-22
                 HHHHHHHHHCHHHHHHHHHHHTT-HHHHHCTTT--HHHHHHHHHHHHHHCHS-HHHHHHHHHHHHHHHHHHHHHHCCHHH..S-TSCHHHHHHHHHCSH CS
  TENA_THI-4  65 esrivdhdgeeielhlrlaealGlsreelsktkpspatkayvrylldlarrgslaeavaallpclfvyqeiaerlkeklr..alegpeyyewvkeyase 161
                 ++ iv h+  e++lh+++++ +G+s+ e+ +t++ +a++ay+ry l+++++ +++++++al pcl++y  +a+ l  + +  +  ++ y +w+++y+ +
  CCE27543.1 309 SNAIVGHVMREMQLHVNYCQTFGISEAEIRATEEKQACTAYTRYVLEVGQSEDWLALQMALAPCLLGYGAVAKMLHAHEStrRGAENVYWPWIQNYLAD 407
                 689*********************************************************************6555443355888899*********** PP

                 HHHHHHH CS
  TENA_THI-4 162 efraave 168
                 ++ +av+
  CCE27543.1 408 DYVQAVR 414
                 **99986 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1     1e-08   4.7e-05     160     283 ..      66     225 ..      39     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1e-08
                 E...EEEEECESSSHH......HHHHHHHHHCTESEEEEEHHHHHHHHTSCT.........HSHHHHHHHHHHHHHTTSSEEEEEEGGGE....EEEEE CS
        PfkB 160 t...fdpnlldplgaq......fkeallellaladllkpneeElealtgekl.........edieealaalhklkakgaktvvvtlGkeG....alvve 236
                     +dp++++++gaq        e  ++ll+l+ +l+pn  E++ ++ e++         ++++++ +++ +++a g+k+v+v+ G  +    + v++
  CCE27543.1  66 SslvVDPVMVSTSGAQllpheaIHELSRHLLPLTMVLTPNIPEAKLILAENGaspsvydnpQSVADVENMGRQIQALGPKWVLVKGGHLPfrsdMTVAQ 164
                 3445899999999999998886677778889********************************************************765222244555 PP

                 ...............TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHH CS
        PfkB 237 ...............kdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfan 283
                                 +++l+v++ p +   +t G+G s ++++ a++++g ++  a+r a+
  CCE27543.1 165 vdddkhvvvdvlvgpDGQVLRVES-PYQASSSTHGTGCSLASAISAGIAQGVNIPSAVRSAC 225
                 788999999999998888888888.8899999999999999999999999999999999887 PP

>> DUF2518  Protein of function (DUF2518)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   8.7e-05      0.39      80     131 ..      14      64 ..       5      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.7e-05
     DUF2518  80 adqvviavspeiteeeleatLkqaAsdlfssGrlgsgdnqltiraRtllhpe 131
                 + ++v  v++++ ee++ea  +++  d+ ++G l+   +++++ aR++++ +
  CCE27543.1  14 GVRAVHVVPSSFVEEQIEACFEDVGVDVVKTGMLA-AASTIEMVARQVVKHS 64 
                 568999****************************9.58999999**998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3508.50
//
Query:       CCE27544.1  [L=1397]
Description: related to sexual differentiation and meiosis protein ste20 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.6e-132  439.5   0.0   2.7e-131  438.0   0.0    1.8  2  RICTOR_N    Rapamycin-insensitive companion of mTOR, N-term
      1e-37  128.1   0.1    7.3e-35  118.9   0.0    4.1  4  RICTOR_M    Rapamycin-insensitive companion of mTOR, middle d
    1.3e-37  128.5   0.0    3.1e-35  120.9   0.0    3.4  3  RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N 
    1.9e-29  101.7   0.2    5.8e-28   96.9   0.1    3.4  4  RICTOR_V    Rapamycin-insensitive companion of mTOR, domain 5
      1e-14   54.4   9.4      1e-14   54.4   9.4    2.2  2  HR1         Hr1 repeat
  ------ inclusion threshold ------
        0.1   12.8   5.0       0.25   11.5   5.0    1.6  1  Uds1        Up-regulated During Septation


Domain annotation for each model (and alignments):
>> RICTOR_N  Rapamycin-insensitive companion of mTOR, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.0   0.0  9.2e-135  2.7e-131       1     373 []     245     622 ..     245     622 .. 0.94
   2 ?   -3.4   0.0       1.2   3.6e+03     240     268 ..     942     970 ..     938     974 .. 0.82

  Alignments for each domain:
  == domain 1  score: 438.0 bits;  conditional E-value: 9.2e-135
    RICTOR_N   1 vekandLvkllkrhpelkydlsleellkriqfmLldeskevraagyRilRylisdseslklllklkldiliirSLekdsksevEReqALkLirafleik 99 
                 v++an+Lv+l+krhp lkydl++  ++ r+q+mLl+es+ev+aagyR++Ry+isd  s+k+++++++d+l+irSL++ +k++vEReqALk++rafl++k
  CCE27544.1 245 VSRANQLVELFKRHPALKYDLVWAIFGLRMQMMLLSESREVVAAGYRVARYAISDAPSIKRIRSFNTDFLVIRSLNNYRKADVEREQALKFVRAFLDVK 343
                 689************************************************************************************************ PP

    RICTOR_N 100 kgakelsksvvralvavaehed.............DrlrricletLaElllldpelvveagGlrvllnalldgsselaesllvallylLdspetrkylr 185
                 +g+ke+s++vvr++vavae++              Drl+ ic+etLaE+l++dp l++++gGl +l +al++g+++  esl++a+lylLd+p++rky+ 
  CCE27544.1 344 DGIKEVSRAVVRTIVAVAEQGGdrrpgiqpadqslDRLCPICVETLAEILVRDPPLLIASGGLGTLSEALAEGTYKSPESLTSAFLYLLDAPQRRKYIL 442
                 *******************8888889999999999**************************************************************** PP

    RICTOR_N 186 kgldleillspftdslekekkkesneeklqnsakaisslLksWsGlialsmnnfrplksLvsaLripslevrkaildllfdllrikppewsesflagrr 284
                 +g+ l+ ++++ftd+l     +++ e  l+++++a+s++++sWsGl++lsm+nfrp++sL+ ++ +p++++r+++ldllf+llrik+p w +sflagrr
  CCE27544.1 443 PGYGLDGVFTAFTDQL-----ADAAEGMLKQNSRAVSVAMRSWSGLMTLSMYNFRPIRSLIASILFPNPSIRETVLDLLFSLLRIKSPAWATSFLAGRR 536
                 **************44.....4777788*********************************************************************** PP

    RICTOR_N 285 ltt..r.ansksqkkqeeneaeesaelkkkeserkrenlvdhylallllvlieaglleaLvevieeesdsslsrkatlLlgellklanrlLP 373
                 ltt  r an+ks+++     + ++a + +++s   +++++dhy+alll+vli+a+ll +L+++++ e+d +l+rk+tlL+ge+lkla+rlLP
  CCE27544.1 537 LTTygRvANMKSAATR----DRSAAFDMEEDSG--EQSFLDHYTALLLAVLIKAELLASLLQIAQSEEDAMLKRKSTLLIGEVLKLASRLLP 622
                 ***8756666643333....3333334444544..778*****************************************************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.2
    RICTOR_N 240 rplksLvsaLripslevrkaildllfdll 268
                  +++ Lv  L+ p++ev ++++++l + +
  CCE27544.1 942 WAIRLLVTQLYDPEIEVCSTAIKILESAC 970
                 57999999999999999999999996655 PP

>> RICTOR_M  Rapamycin-insensitive companion of mTOR, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.36   1.1e+03      28      52 ..     789     813 ..     773     818 .. 0.81
   2 !  118.9   0.0   2.4e-38   7.3e-35       2     102 ..     822     922 ..     821     924 .. 0.97
   3 ?   -0.3   0.0       0.3   8.9e+02      29      56 ..    1078    1105 ..    1074    1119 .. 0.80
   4 ?    2.6   0.0     0.038   1.1e+02      23      43 ..    1163    1183 ..    1148    1186 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.36
    RICTOR_M  28 GvlsssknGlklLekwkiftllykl 52 
                   l +s++G+k+L ++k+   + ++
  CCE27544.1 789 HSLLQSPEGVKFLADSKLLRQIAEC 813
                 56899***********999887665 PP

  == domain 2  score: 118.9 bits;  conditional E-value: 2.4e-38
    RICTOR_M   2 gvsagepllskerleetlsrgYfkfiGvlsssknGlklLekwkiftllyklvelksrddllklilssldysvdghiRiilskaLtnssekiRlyatkhL 100
                 g +a+ p++s++rl++tl+ gYf ++Gvlss+++Gl lLe+w++f+++y++++ k+r dl+kl+ls++dy+++gh+R++lsk Lt+++++iR++at+ L
  CCE27544.1 822 GLTAQYPMFSNDRLTDTLCGGYFPMLGVLSSEPKGLLLLERWRMFNMMYHIADFKQRPDLIKLLLSNFDYGLHGHPRVLLSKSLTAGTKDIRIHATNAL 920
                 678999********************************************************************************************* PP

    RICTOR_M 101 rk 102
                 rk
  CCE27544.1 921 RK 922
                 98 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.3
    RICTOR_M   29 vlsssknGlklLekwkiftllyklvelk 56  
                   l+++ +G klL++ + f+ +   + ++
  CCE27544.1 1078 ELTRTREGCKLLSDKGHFEEFAATIREH 1105
                  699***********99999988776655 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.038
    RICTOR_M   23 YfkfiGvlsssknGlklLekw 43  
                   f  +G++s+s +Gl++L+++
  CCE27544.1 1163 AFFVLGLISRSTHGLEMLSEH 1183
                  57789*************997 PP

>> RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3     4e+03      12      50 ..     277     314 ..     267     351 .. 0.72
   2 ?    3.2   0.0     0.039   1.2e+02      49      81 ..     768     809 ..     738     812 .. 0.68
   3 !  120.9   0.0     1e-38   3.1e-35       3     106 ..     940    1043 ..     939    1045 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
  RasGEF_N_2  12 nqLydqsrevvaaaleiLeeacddkeslevlvelkpslq 50 
                   L  +srevvaa  ++   a++d  s++ + ++++++ 
  CCE27544.1 277 M-LLSESREVVAAGYRVARYAISDAPSIKRIRSFNTDFL 314
                 3.4578999999999999999999888888888888763 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.039
  RasGEF_N_2  49 l.........qhlgeigslLllkllstssGfkylqelnfvee 81 
                 +         q+  ++g  L+  ll++++G+k+l +++ +++
  CCE27544.1 768 FaevkntkntQKYVKAGCALMHSLLQSPEGVKFLADSKLLRQ 809
                 044444444355557999****************99887665 PP

  == domain 3  score: 120.9 bits;  conditional E-value: 1e-38
  RasGEF_N_2    3 ekWgiellvnqLydqsrevvaaaleiLeeacddkeslevlvelkpslqhlgeigslLllkllstssGfkylqelnfveeeldkWiekkneeYvklvE 99  
                  +kW+i+llv+qLyd++ ev+++a++iLe+ac++k +le++ve++p+l+hlgeig++Lll++lsts G++yl+ l+++++e+d+W+  +n  Yv  +E
  CCE27544.1  940 SKWAIRLLVTQLYDPEIEVCSTAIKILESACNKKVYLEYIVECRPALDHLGEIGAPLLLRFLSTSIGYHYLDGLDYISNEMDDWFLGRNDSYVGVIE 1036
                  59*********************************************************************************************** PP

  RasGEF_N_2  100 ealaeal 106 
                  + la+a+
  CCE27544.1 1037 ASLARAF 1043
                  ****998 PP

>> RICTOR_V  Rapamycin-insensitive companion of mTOR, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.36   1.1e+03      15      40 ..     793     818 ..     790     821 .. 0.87
   2 ?   -2.8   0.0       2.5   7.6e+03      51      66 ..     846     861 ..     841     874 .. 0.56
   3 ?   -2.8   0.0       2.6   7.9e+03      56      69 ..    1080    1093 ..    1079    1093 .. 0.84
   4 !   96.9   0.1   1.9e-31   5.8e-28       2      71 .]    1117    1186 ..    1116    1186 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.36
    RICTOR_V  15 sselGielldeydivedivelaeesp 40 
                 +s++G+++l +++++ +i+e   +++
  CCE27544.1 793 QSPEGVKFLADSKLLRQIAECLAQCD 818
                 5899***************9998886 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.5
    RICTOR_V  51 vLglissteegaeiLd 66 
                 +Lg++ss  +g  +L+
  CCE27544.1 846 MLGVLSSEPKGLLLLE 861
                 4555555555554444 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.6
    RICTOR_V   56 ssteegaeiLdelg 69  
                   +t+eg+++L++ g
  CCE27544.1 1080 TRTREGCKLLSDKG 1093
                  68********9865 PP

  == domain 4  score: 96.9 bits;  conditional E-value: 1.9e-31
    RICTOR_V    2 klKaaLWaiGhigsselGielldeydivedivelaeespvlslRGtafyvLglissteegaeiLdelgWe 71  
                  k+Ka+LWa+G++gs+elG+++l+ +div +iv++ae+++v+slRGtaf+vLglis++++g e+L+e+gW+
  CCE27544.1 1117 KVKACLWAVGNVGSMELGAPFLEATDIVGNIVHIAETHEVMSLRGTAFFVLGLISRSTHGLEMLSEHGWD 1186
                  89*******************************************************************6 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   9.4   3.4e-18     1e-14       5      63 ..     115     174 ..     112     178 .. 0.94
   2 ?   -3.6   0.1       4.2   1.3e+04      15      25 ..     458     468 ..     457     474 .. 0.71

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 3.4e-18
         HR1   5 lekklekElkireGAenllralesk.ktqnkkvrqeaeselsesnskielLreqLeelqa 63 
                 l+ kl++E+ki+eG en+l+al+ k ++q k++rq++e+els sn++i++Lr+++++ q+
  CCE27544.1 115 LREKLNREMKIKEGSENMLEALNIKkAKQTKEQRQRVEAELSASNNRIKELRQRISDTQR 174
                 899********************888*****************************99887 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.2
         HR1  15 ireGAenllra 25 
                 + ++Ae +l++
  CCE27544.1 458 LADAAEGMLKQ 468
                 67899999994 PP

>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   5.0   8.4e-05      0.25      37     110 ..     112     174 ..     106     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.4e-05
        Uds1  37 lealrkkLaletklrdaarsL.srlyssskksakssaarsnskssreslakaeeelaeserkvdelaseleklee 110
                 l  lr+kL+ e+k++++ +++ ++l+++++k+            ++e+ ++ e+el++s+++++el + +   ++
  CCE27544.1 112 LYGLREKLNREMKIKEGSENMlEALNIKKAKQ------------TKEQRQRVEAELSASNNRIKELRQRISDTQR 174
                 5679*************998615556555555............5678999****************99987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       953  (0.0531541); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.48
# Mc/sec: 8737.76
//
Query:       CCE27545.1  [L=300]
Description: probable urate oxidase (uricase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-75  252.2   0.4      1e-40  139.0   0.1    2.0  2  Uricase   Uricase


Domain annotation for each model (and alignments):
>> Uricase  Uricase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   0.1   5.7e-45     1e-40       2     129 ..       8     132 ..       7     134 .. 0.96
   2 !  111.7   0.0   1.5e-36   2.8e-32       2     131 .]     144     290 ..     143     290 .. 0.97

  Alignments for each domain:
  == domain 1  score: 139.0 bits;  conditional E-value: 5.7e-45
                 EEEEEEEEEEEE.EETTCBEBECEEEECCEEEEEESSEEECCHHH-STTT---CCHHHHHHHHHHHHH--SSHH.HHHHHHHHHHHC-TTEEEEEEEEE CS
     Uricase   2 kyGkddvrvlkv.rkstgsafhgfvedevttllegkdrilstyfagdnsdvvasdSvkntvYkmakkhgvespe.Falllakhflekyphveevsvslp 98 
                 +yGkd+vr+lkv r+ + +  +++ e++v++lleg d i+s+y+++dns vva+dS+knt++  ak+h+v++pe Fa++l++hf+++y+h++ ++v++ 
  CCE27545.1   8 RYGKDNVRLLKVdRD-EATDLQNVTEMTVCCLLEG-D-IESSYTHADNSVVVATDSIKNTIFITAKQHPVNPPErFASILGNHFIQQYSHIHVANVNIV 103
                 8***********988.5569***************.*.************************************************************* PP

                 EEEEEEEEECCSSEEEEEECEEEECCCCEEE CS
     Uricase  99 nkhwervdlwgtgkphahafvftpsekptgl 129
                 +++w r+d+  +gkph+h+f+ +  e+++++
  CCE27545.1 104 THRWNRMDV--DGKPHPHSFIKDAGETRNVQ 132
                 *********..669************99986 PP

  == domain 2  score: 111.7 bits;  conditional E-value: 1.5e-36
                 EEEEEEEEEEEEEETTCBEBECEEEECCEEEEEESSEEECC.....................................HHH-STTT---CCHHHHHHHH CS
     Uricase   2 kyGkddvrvlkvrkstgsafhgfvedevttllegkdrilst.....................................yfagdnsdvvasdSvkntvYk 63 
                 ++ ++++ vlk   +tgsafhgf++de+ttl+e++dril+t                                      fa+d+     s+Sv+nt+Yk
  CCE27545.1 144 TSTIAGLSVLK---TTGSAFHGFIRDEYTTLPETWDRILATdvdaswkwstladleavehdtpkfdkaweaareitlkLFAQDD-----SASVQNTMYK 234
                 7889*******...**********************************************************************.....********** PP

                 HHHHH--SSHHHHHHHHHHHHHC-TTEEEEEEEEEEEEEEEEEE.CC..SSEEEEEECEEEECCCCEEEEE CS
     Uricase  64 makkhgvespeFalllakhflekyphveevsvslpnkhwervdl.wg..tgkphahafvftpsekptglie 131
                 m ++               +le++p+ e+v +slpnkh +++dl w+   ++  a+a+v+ p+  p+gli+
  CCE27545.1 235 MSEQ---------------ILEAVPDTESVAYSLPNKHNFELDLsWHkgLKNLGADAEVYVPQTSPNGLIK 290
                 ****...............****************************6644799***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2173.43
//
Query:       CCE27546.1  [L=179]
Description: probable ribosomal protein L23, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-42  143.9   0.0    4.7e-42  143.2   0.0    1.3  1  Ribosomal_L13  Ribosomal protein L13


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.0   2.6e-46   4.7e-42       7     122 ..      34     150 ..      31     152 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 2.6e-46
                    ETTSBHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEEE-SSTTSEEEEEHHHHHCCSH.HHHHHHHHHCCS-SSHH CS
  Ribosomal_L13   7 AegqvlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyrhtgypgglkevtakellekkp.eeilekaVkgmLpknkl 101
                    A+  +lgrlas+ia++L+Gk+kp+++p++dcGdyvvv+n+  + +tgkkl +k+yyrh+++pg+lk+vt++ l+ek+  +e+l+kaV+gmLpkn+l
     CCE27546.1  34 ATPPSLGRLASRIAVILMGKNKPIFDPSTDCGDYVVVTNCAALYTTGKKLWRKKYYRHNTRPGSLKTVTMDVLMEKHGgSEVLRKAVSGMLPKNRL 129
                    77789**********************************************************************99889**************** PP

                    HHHHGCTEEEESSSTTSGGGG CS
  Ribosomal_L13 102 grrrlkrLkvyageehpheaq 122
                    +++rl rLk ++g++hp++++
     CCE27546.1 130 RDKRLARLKAFEGDAHPYKQN 150
                    *****************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1314.22
//
Query:       CCE27547.1  [L=248]
Description: probable LYS7-copper chaperone for superoxide dismutase Sod1p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-09   36.6   0.0    7.3e-09   36.0   0.0    1.3  1  HMA       Heavy-metal-associated domain
    1.2e-08   35.3   0.0    1.9e-08   34.6   0.0    1.3  1  Sod_Cu    Copper/zinc superoxide dismutase (SODC)


Domain annotation for each model (and alignments):
>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   8.1e-13   7.3e-09       1      62 []      10      67 ..      10      67 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 8.1e-13
         HMA  1 tvrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62
                +++v ++ C+gC ++v ++L +l g+++v  +l  +   V+g+a++   ++i+eai+++g++
  CCE27547.1 10 VFAV-PLSCDGCIKAVSDSLYSLGGITKVQGNLTDQLISVDGSAAP---SAIVEAIQSTGRD 67
                5788.9****************************************...*********9975 PP

>> Sod_Cu  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.2e-12   1.9e-08       5     124 ..      99     199 ..      95     219 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 2.2e-12
                 EEEEEEEEEEEECSTTSTCEEEEEEEECSS-STEEEEEEEESSTTTTTTTGGG-SB-STT-.CSSTTTTTCS-TTEEEEEEESTTSEEEEEEEEESC.B CS
      Sod_Cu   5 kgevsGtvtftqeeskesgsvevtvevkglppggkhgfHiHengdcsagfksagghfnptgkkhgapndeerhaGDLgnievdadgtakleittdklvs 103
                 + +v+G +++ q +s   g + v+++v+gl pg k+ + i e+gd+++g +s+g+++   ++ +          G Lg + v++dg++++  + d+ ++
  CCE27547.1  99 DRKVRGLARIVQVNS---GRCLVDLTVRGLVPG-KYYVTIREYGDLKDGAESTGAVWSGGET-D--------AKGILGTVDVGEDGRGSIF-F-DRPFQ 182
                 4799*******9873...67***********97.6**********************66433.3........37*************9994.4.88899 PP

                 CSTTTBCTTEEEEEESS---T CS
      Sod_Cu 104 lkgensilgralvihagaDdl 124
                 +    +i+g+a+v    +D+ 
  CCE27547.1 183 IW---EIIGHAMVLA-RQDKT 199
                 98...8******998.66653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1866.87
//
Query:       CCE27548.1  [L=508]
Description: related to NADPH oxidase cytosolic protein p67phox [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-16   59.3   5.1    2.3e-08   33.5   0.0    4.2  4  TPR_1     Tetratricopeptide repeat
    9.7e-16   56.6   4.3    2.4e-06   27.2   0.0    4.5  4  TPR_2     Tetratricopeptide repeat
    1.3e-10   41.4   0.6    1.1e-06   28.8   0.2    3.0  4  TPR_12    Tetratricopeptide repeat
    7.9e-10   38.2   7.1    9.2e-07   28.6   0.0    4.3  4  TPR_8     Tetratricopeptide repeat
      7e-08   32.3   0.0    1.4e-07   31.4   0.0    1.4  1  PB1       PB1 domain
    1.1e-07   31.5   2.2    5.8e-06   25.9   0.0    3.2  3  TPR_11    TPR repeat
    4.8e-07   29.4   0.0    4.4e-06   26.3   0.0    2.6  2  TPR_7     Tetratricopeptide repeat
    9.9e-06   25.9   0.1        0.2   12.3   0.0    4.3  4  TPR_6     Tetratricopeptide repeat
    1.1e-05   25.5   0.5     0.0027   17.8   0.1    2.6  2  TPR_9     Tetratricopeptide repeat
    7.3e-05   23.3   0.1     0.0013   19.3   0.0    2.5  2  TPR_16    Tetratricopeptide repeat
    0.00095   19.4   1.3        2.4    8.7   0.0    4.2  4  TPR_17    Tetratricopeptide repeat
     0.0044   16.9   0.9      0.056   13.3   0.0    3.1  4  TPR_10    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.5   0.1       0.21   12.5   0.0    2.9  3  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       3.3   4.6e+03      12      21 ..      17      26 ..      16      31 .. 0.72
   2 !   33.5   0.0   1.7e-11   2.3e-08       2      32 ..      37      67 ..      36      68 .. 0.95
   3 !   17.2   0.1   2.4e-06    0.0033       1      30 [.      70      99 ..      70     103 .. 0.92
   4 !    8.2   0.1    0.0017       2.3       2      16 ..     121     135 ..     120     137 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.3
                HHTT-HHHHH CS
       TPR_1 12 fklgkydeAl 21
                ++++++ eAl
  CCE27548.1 17 YNNNDFREAL 26
                5678888887 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 1.7e-11
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  2 kalynlGnayfklgkydeAleyyekALelnP 32
                k+l+n+G+++  lg++++A+e+ye+A++l+ 
  CCE27548.1 37 KILFNMGVIHATLGEHEKAVECYERAISLDR 67
                789**************************95 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 2.4e-06
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALel 30
                a a++++G+  f lg+y+eAl  ++ AL +
  CCE27548.1 70 AIAHFQRGVSNFILGNYNEALINFNAALAH 99
                679************************976 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHTT- CS
       TPR_1   2 kalynlGnayfklgk 16 
                 ++lyn+G++y +l++
  CCE27548.1 121 EVLYNRGLCYINLQQ 135
                 689*******99986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1         1   1.4e+03      11      26 ..      16      31 ..      12      34 .. 0.75
   2 !   27.2   0.0   1.7e-09   2.4e-06       2      31 ..      37      66 ..      36      68 .. 0.95
   3 !   20.2   0.1   3.1e-07   0.00043       1      30 [.      70      99 ..      70     103 .. 0.92
   4 !    6.9   0.1    0.0054       7.5       2      17 ..     121     136 ..     120     138 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1
       TPR_2 11 yyklgdyeeAleafek 26
                 y+++d+ eAl  fek
  CCE27548.1 16 RYNNNDFREALMEFEK 31
                6899999999866665 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 1.7e-09
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleld 31
                ++l+n+G +++ lg++e+A+e++e+A++ld
  CCE27548.1 37 KILFNMGVIHATLGEHEKAVECYERAISLD 66
                689*************************98 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 3.1e-07
       TPR_2  1 aealynlGlayyklgdyeeAleafekAlel 30
                a a++++G + + lg+y+eAl  f++Al++
  CCE27548.1 70 AIAHFQRGVSNFILGNYNEALINFNAALAH 99
                689*************************97 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0054
       TPR_2   2 ealynlGlayyklgdy 17 
                 e+lyn+Gl+y++l++ 
  CCE27548.1 121 EVLYNRGLCYINLQQR 136
                 89**********9985 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   8.6e-07    0.0012      44      74 ..      35      65 ..      12      67 .. 0.76
   2 !   28.8   0.2   7.8e-10   1.1e-06       2      76 ..      35     101 ..      34     102 .. 0.91
   3 !   10.4   0.2   0.00046      0.63       3      34 ..      70     101 ..      67     120 .. 0.77
   4 ?   -2.1   0.0       3.6     5e+03       4      18 ..     121     135 ..     118     137 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.6e-07
      TPR_12 44 tattlrnLgrlyralgryeeAlelleealai 74
                t+ +l+n+g ++  lg++e+A+e +e+a+ +
  CCE27548.1 35 TSKILFNMGVIHATLGEHEKAVECYERAISL 65
                5556677777777777777777777777655 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 7.8e-10
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 ++++l n++++++ lg++++A e++e+a+ +        +  +a++ +  g   + lg+y eAl  ++ ala ++
  CCE27548.1  35 TSKILFNMGVIHATLGEHEKAVECYERAISLD------RY--LAIAHFQRGVSNFILGNYNEALINFNAALAHLR 101
                 678899**********************6666......34..9****************************9865 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00046
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiar 34 
                 a+a+ ++++  + lg+y eAl ++++al+  r
  CCE27548.1  70 AIAHFQRGVSNFILGNYNEALINFNAALAHLR 101
                 55666788889999999999999999998764 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 3.6
      TPR_12   4 talnnlaavlrrlgr 18 
                  +l+n+++++  l++
  CCE27548.1 121 EVLYNRGLCYINLQQ 135
                 567788888866655 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.3   8.8e+03      13      27 ..      18      32 ..      17      34 .. 0.80
   2 !   28.6   0.0   6.7e-10   9.2e-07       2      32 ..      37      67 ..      36      68 .. 0.95
   3 !    6.5   0.0    0.0083        11       3      28 ..      72      97 ..      70      98 .. 0.90
   4 ?    4.5   0.0     0.036        50       2      18 ..     121     137 ..     121     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.3
                HTT-HHHHHHHHHHH CS
       TPR_8 13 klgdyeeAkeyyeka 27
                + +d+ eA   +ek 
  CCE27548.1 18 NNNDFREALMEFEKI 32
                568999999999985 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 6.7e-10
                CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAkeyyekaleldp 32
                ++++n+g i+ +lg++e+A+e+ye+a++ld+
  CCE27548.1 37 KILFNMGVIHATLGEHEKAVECYERAISLDR 67
                789**************************96 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0083
                HHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyyekal 28
                a+++ g   + lg+y+eA   ++ al
  CCE27548.1 72 AHFQRGVSNFILGNYNEALINFNAAL 97
                6789999999************9997 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.036
                 CHHHHHHHHHHHTT-HH CS
       TPR_8   2 eayynlgsiylklgdye 18 
                 e++yn g++y++l++ +
  CCE27548.1 121 EVLYNRGLCYINLQQRD 137
                 689**********9865 PP

>> PB1  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0     1e-10   1.4e-07       8      73 ..     395     465 ..     389     482 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1e-10
                 ETTEEEEEEEEGSSS-HHHHHHHHHHHHTSTCCSEEEEEEETT...SSEEEESSHHHHHHHHHHHHHT...S CS
         PB1   8 ygggirrelsvssnisfeeLrakvekrfklsdedvklkYpded...gdlVtitsDeDLeealeearsl...k 73 
                  ++++ r + v+  i + +++ak+ ++f+l   ++k k +ded   gd +t+  ++DLe+a++ a+sl   +
  CCE27548.1 395 VHAADIRYIMVDTAIEYPDFVAKITDKFGLK-RRFKMKIEDEDmpgGDMITVGDQDDLEMAVQSATSLaqrQ 465
                 44444555999*******************6.**********98855******************9986541 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   4.2e-09   5.8e-06       7      39 ..      49      81 ..      43      84 .. 0.89
   2 ?    4.9   0.1     0.015        20       5      22 ..      81      98 ..      79      99 .. 0.90
   3 ?   -2.5   0.1       3.2   4.4e+03      29      38 ..     121     130 ..     121     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 4.2e-09
      TPR_11  7 qGkyeeAieaYkkAlkldPdnaeayynLGlayy 39
                +G+ e+A+e+Y++A+ ld   a a++ +G+  +
  CCE27548.1 49 LGEHEKAVECYERAISLDRYLAIAHFQRGVSNF 81
                8****************************8766 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.015
      TPR_11  5 yeqGkyeeAieaYkkAlk 22
                + +G+y+eA+ ++++Al+
  CCE27548.1 81 FILGNYNEALINFNAALA 98
                568*************96 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.2
      TPR_11  29 eayynLGlay 38 
                 e++yn+Gl y
  CCE27548.1 121 EVLYNRGLCY 130
                 578****977 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.2e-09   4.4e-06       2      32 ..      39      67 ..      38      71 .. 0.89
   2 ?   -0.5   0.0       1.2   1.6e+03       5      24 ..      69      95 ..      64     103 .. 0.66

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.2e-09
       TPR_7  2 LlnLarlysrlGdyeeAielyeqsLaltkdp 32
                L+n+++++  lG++e+A+e+ye+  a+  d 
  CCE27548.1 39 LFNMGVIHATLGEHEKAVECYER--AISLDR 67
                89*********************..776665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.2
       TPR_7  5 Larlysr.......lGdyeeAielyeq 24
                La ++++       lG+y eA+  + +
  CCE27548.1 69 LAIAHFQrgvsnfiLGNYNEALINFNA 95
                666666645666667888888765555 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.8   2.5e+03      10      26 ..      16      32 ..      12      35 .. 0.79
   2 !   12.3   0.0   0.00015       0.2       3      28 ..      39      64 ..      37      65 .. 0.94
   3 ?   -0.2   0.0       1.4     2e+03       2      24 ..      72      94 ..      68     102 .. 0.68
   4 !    6.9   0.0    0.0082        11       1      17 [.     121     137 ..     121     144 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.8
                HHHHHHHHHHHHHHHHH CS
       TPR_6 10 yrklgdtdkAlealerl 26
                +++ +d ++Al  +e++
  CCE27548.1 16 RYNNNDFREALMEFEKI 32
                677779*****999997 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00015
                HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  3 lyklalsyrklgdtdkAlealerlik 28
                l++++  +  lg+++kA+e +er i+
  CCE27548.1 39 LFNMGVIHATLGEHEKAVECYERAIS 64
                89********99***********985 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.4
                HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  2 AlyklalsyrklgdtdkAleale 24
                A ++++ s + lg++ +Al  ++
  CCE27548.1 72 AHFQRGVSNFILGNYNEALINFN 94
                45566666554479999987666 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0082
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtd 17 
                 ++ly+++l+y++l++ d
  CCE27548.1 121 EVLYNRGLCYINLQQRD 137
                 68**********75654 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.9e-06    0.0027       4      60 ..      45     101 ..      43     111 .. 0.92
   2 ?    5.4   0.1     0.015        21      19      57 ..     110     148 ..     104     162 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.9e-06
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 i++   ++e+a +++er + l+   +  ++ RG+ ++ lG++++Al  ++a+la+  
  CCE27548.1  45 IHATLGEHEKAVECYERAISLDRYLAIAHFQRGVSNFILGNYNEALINFNAALAHLR 101
                 6888889**********************************************9965 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.015
       TPR_9  19 erllllaPddpeerrdRGlllaqlGclsaAladLeayla 57 
                 ++ ll+   ++e ++ RGl++  l +   +++dL +++ 
  CCE27548.1 110 QLGLLFRLYSCEVLYNRGLCYINLQQRDIGMNDLFYAAK 148
                 555666666778899*******************99984 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       0.4   5.6e+02       3      17 ..      12      26 ..      11      32 .. 0.85
   2 !   19.3   0.0   9.4e-07    0.0013       3      64 ..      42     100 ..      40     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.4
      TPR_16  3 laraalragdyddAa 17
                +a+++++++d+++A+
  CCE27548.1 12 AALDRYNNNDFREAL 26
                6899**********8 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 9.4e-07
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 ++ +++ +g+ ++A++ +e+a+ +d      a A++ +g++ + +g++ eA+  ++aal++ 
  CCE27548.1  42 MGVIHATLGEHEKAVECYERAISLD---RYLAIAHFQRGVSNFILGNYNEALINFNAALAHL 100
                 56678899*****************...889*********************9999999875 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.045        63      13      34 .]      36      57 ..      34      57 .. 0.90
   2 !    8.7   0.0    0.0017       2.4       1      33 [.      58      90 ..      58      91 .. 0.95
   3 ?    2.1   0.1      0.23   3.2e+02      13      28 ..     120     135 ..     118     137 .. 0.86
   4 ?   -2.9   0.0       8.8   1.2e+04      10      21 ..     182     193 ..     180     196 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.045
      TPR_17 13 adaynnLAelllknGdlmtArq 34
                ++ ++n++++++ +G++++A++
  CCE27548.1 36 SKILFNMGVIHATLGEHEKAVE 57
                5789***************975 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0017
      TPR_17  1 lylkaleldPnnadaynnLAelllknGdlmtAr 33
                +y++a+ ld   a a++++++    +G++ +A+
  CCE27548.1 58 CYERAISLDRYLAIAHFQRGVSNFILGNYNEAL 90
                8**********************9999999985 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.23
      TPR_17  13 adaynnLAelllknGd 28 
                  ++++n++ ++ ++ +
  CCE27548.1 120 CEVLYNRGLCYINLQQ 135
                 589********99876 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 8.8
      TPR_17  10 PnnadaynnLAe 21 
                 Pn a++ n++A+
  CCE27548.1 182 PNEAKVRNLKAK 193
                 999999999985 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.75     1e+03      13      36 ..      17      40 ..      13      41 .. 0.83
   2 !   13.3   0.0   4.1e-05     0.056       7      31 ..      41      65 ..      38      67 .. 0.94
   3 ?   -2.1   0.0       2.9     4e+03       8      16 ..      69      77 ..      68      77 .. 0.92
   4 ?   -1.8   0.0       2.3   3.2e+03      16      25 ..      84      93 ..      82     101 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.75
      TPR_10 13 rqrgrydeAealleealairrrll 36
                ++ +++ eA+  +e+  ++ + l+
  CCE27548.1 17 YNNNDFREALMEFEKICDTSKILF 40
                68899*****99999988887665 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 4.1e-05
      TPR_10  7 NLanalrqrgrydeAealleealai 31
                N+++++  +g++++A++ +e+a+++
  CCE27548.1 41 NMGVIHATLGEHEKAVECYERAISL 65
                99********************986 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.9
      TPR_10  8 Lanalrqrg 16
                La+a++qrg
  CCE27548.1 69 LAIAHFQRG 77
                9******98 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.3
      TPR_10 16 grydeAeall 25
                g+y+eA+  +
  CCE27548.1 84 GNYNEALINF 93
                6677776444 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       3.9   5.4e+03      12      30 ..      17      35 ..      10      37 .. 0.77
   2 ?   12.5   0.0   0.00015      0.21       8      38 ..      43      73 ..      38      79 .. 0.82
   3 ?   -0.1   0.0       1.7   2.4e+03       6      30 ..      75      99 ..      70     112 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3.9
      TPR_14 12 lalGdpdeAiallrralal 30
                +++ d++eA+  +++++++
  CCE27548.1 17 YNNNDFREALMEFEKICDT 35
                4678999999999998765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00015
      TPR_14  8 aeallalGdpdeAiallrralalaPddaeaw 38
                + ++++lG++++A+++++ra++l+   a a+
  CCE27548.1 43 GVIHATLGEHEKAVECYERAISLDRYLAIAH 73
                567999****************986666555 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.7
      TPR_14  6 alaeallalGdpdeAiallrralal 30
                +++   + lG++ eA+  +++ala+
  CCE27548.1 75 QRGVSNFILGNYNEALINFNAALAH 99
                5555667789999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3803.09
//
Query:       CCE27549.1  [L=627]
Description: related to glutamyl-tRNA synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-87  292.9   0.0      3e-87  292.4   0.0    1.2  1  tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic d


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.4   0.0   1.7e-91     3e-87       2     313 ..      96     411 ..      95     412 .. 0.94

  Alignments for each domain:
  == domain 1  score: 292.4 bits;  conditional E-value: 1.7e-91
                   -EEEE---SSSS-BHHHHHHHHHHHHHHHHTT.-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---S........SEEEEGGGGHHHHHHHHHHHH CS
  tRNA-synt_1c   2 VrtRfaPePtGyLHiGhakaallnylfAknnn.GkfilRieDTdperekeeaeesiledlkwlgikwd........ekptyqsdrfdelkkyaeeLi 89 
                   +r RfaP+PtGyLH+G+ ++al++yl Ak+ + G filR+eDTd++r +++ e++ +++lkw g++wd        ++p++qs r+d++++ ++ L+
    CCE27549.1  96 IRARFAPSPTGYLHVGSLRTALFSYLAAKASKgGAFILRLEDTDQKRLVHDSENRLIQELKWAGLQWDegpdcggpYGPYKQSLRLDIYESHVQTLL 192
                   899**************************865278************************************************************** PP

                   HTTSEEEE-STHHHHHHHHCCSSHSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSSGGGSSTEEEEEEESGGGSBTTTBTSTSEEE- CS
  tRNA-synt_1c  90 kkGkAYvcectkeeleeereeqeklgskerdrydeenlklfeeemkkgkaegekavvRlkideessvefrDlvrgriklepqeihdlvivksdiyPt 186
                    +G+AY+c+ct+e+le++++e +++g  ++  y + ++++ + e+  ++++g ++vvRlk d+ +  +f+D v+g  + ++ + +d+v+ ksd+ Pt
    CCE27549.1 193 DRGHAYRCFCTSEQLENQKRELHEAG--KSTAYPGTCRAVDTAEADMRASRGDAHVVRLKGDTFGRPKFYDAVYGPFQKAH-AEEDFVLLKSDGFPT 286
                   *******************9999888..7999********************************************99988.779************ PP

                   HHHHHHHHHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHH CS
  tRNA-synt_1c 187 YdfavvidDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpeker 283
                   Y++a+v+dD+l++ithv+r+ee+l +tpk+++l++a+g+e+p+f+h+ l+ n +++klSKR+ s+   ++ ++++ + + alln +  lG + ++  
    CCE27549.1 287 YHLACVVDDHLMKITHVIRGEEWLISTPKHLALYQAFGWEPPTFAHVGLLSNPDGTKLSKRDDSVD--ISTYRDKHVFPVALLNWVGNLGSSFKSVS 381
                   **************************************************************9866..**********************9987654 PP

                   .HHHHHHCCCSSS.EEEEHHHHHHHHHHHHH CS
  tRNA-synt_1c 284 .elftreeliksfdlnresksleafdrkkLe 313
                     l++  +l ++f + + ++ + + + kkL+
    CCE27549.1 382 yPLLKISDLVNAF-TFHFTRGAIKLNAKKLD 411
                   1577777888888.66667777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4642.68
//
Query:       CCE27550.1  [L=421]
Description: related to DnaJ homolog subfamily A member 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-35  120.8   0.1    7.4e-35  120.2   0.1    1.2  1  DnaJ_C          DnaJ C terminal domain
    4.1e-24   84.5   2.7    7.3e-24   83.7   2.7    1.4  1  DnaJ            DnaJ domain
    1.7e-13   50.7  19.6    1.7e-13   50.7  19.6    1.9  2  DnaJ_CXXCXGXG   DnaJ central domain
     0.0011   18.9  12.0       0.12   12.3   1.1    2.4  2  Anti-TRAP       Tryptophan RNA-binding attenuator protein inh
  ------ inclusion threshold ------
      0.075   13.0   8.3        1.4    9.0   1.3    2.4  2  HypA            Hydrogenase/urease nickel incorporation, meta
      0.088   12.9   0.7       0.24   11.4   0.7    1.8  1  Malate_DH       Malate dehydrogenase enzyme
       0.55    9.5   3.8        3.9    6.7   0.5    2.4  3  DUF1356         Protein of unknown function (DUF1356)
        4.7    6.8   9.3        3.3    7.3   1.7    2.2  2  TackOD1         Thaumarchaeal output domain 1


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.1   3.3e-38   7.4e-35       4     148 .]     130     350 ..     128     350 .. 0.95

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 3.3e-38
                 EEEE-HHHHHH-.EEE.EEEE............................................................................TE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.....................................................................xxxxxx RF
      DnaJ_C   4 eleisleelykGktkkikikrnvi.....................................................................kkekkt 33 
                 e +++leelykGkt k++ +++v                                                                      ++ekk 
  CCE27550.1 130 EYKVTLEELYKGKTVKFAANKQVLcgqckgsggkekaksaacerckgngmveairqigpgmmrretvlcdhcqgsgqvfkekdrckkckgkrtTQEKKA 228
                 789******************999*******************************************************************98888889 PP

                 EEEEE-TT--TT-EEEETT-SSSS...S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHT.EEEEEE-SS-E.EEE.....EE--TT-EEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxx.....xxxxxxxxxxxxx RF
      DnaJ_C  34 levkipaGikdgqkirlegeGdeeg.gepGDlivtikvkphpvFkrkgndlyveveislaeallG.gklevptldgk.vkl.....kitqpgevlrikg 124
                 le+ ip+G  +g++i+lege+d+ + + pGD+++t+ ++ h++F+r g+dl  +++i+laeal+G  ++ v+ ldg+ +++     ki+qpg+ ++++g
  CCE27550.1 229 LELYIPRGSMQGERIVLEGEADQYPdQIPGDIVFTLVEEHHETFSRLGSDLSADLTITLAEALTGfSRVVVKHLDGRgIHIkrargKILQPGDCIKVSG 327
                 **********************9999***********99**************************77778888955514457788899*********** PP

                 -S-EET...TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C 125 kGmpklkkpgkrGdlyvevkvefP 148
                 +Gmp ++ ++ rGdly+ v+v+fP
  CCE27550.1 328 EGMPMKR-GDARGDLYLLVSVKFP 350
                 ******8.***************9 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   2.7   3.2e-27   7.3e-24       1      63 []      11      75 ..      11      75 .. 0.96

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 3.2e-27
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH..HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdp..eaeekFkeineAyevLsdpekRkqYD 63
                d+Y +L +++ as+++IkkaYrk alkyHPDk p+++  e+e kFkei++Aye+Lsd++kR  YD
  CCE27550.1 11 DLYGLLSIDQGASQEQIKKAYRKAALKYHPDKVPEEQrqESEVKFKEITQAYEILSDEQKRHLYD 75
                79*******************************8888778888*********************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7  19.6   7.4e-17   1.7e-13       1      66 [.     154     220 ..     154     221 .. 0.87
   2 ?   -1.6   0.0       1.6   3.6e+03      41      54 ..     319     332 ..     302     337 .. 0.53

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 7.4e-17
  DnaJ_CXXCXGXG   1 CkkCkGsgakk.gkkktCktCkGsGvvreeqktlgp.fvqqsqstCpeCeGtGkvikekdkCkkCkGk 66 
                    C +CkGsg k+ +k+  C++CkG+G+v+  ++ +gp ++++ +  C++C+G+G+v+kekd+CkkCkGk
     CCE27550.1 154 CGQCKGSGGKEkAKSAACERCKGNGMVEAIRQ-IGPgMMRRETVLCDHCQGSGQVFKEKDRCKKCKGK 220
                    9*******987355889********6544443.99999999999***********************8 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.6
  DnaJ_CXXCXGXG  41 qstCpeCeGtGkvi 54 
                      +C + +G+G  +
     CCE27550.1 319 PGDCIKVSGEGMPM 332
                    34677777777655 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   3.8   0.00015      0.35      12      42 ..     153     180 ..     148     184 .. 0.89
   2 !   12.3   1.1   5.4e-05      0.12      12      41 ..     197     222 ..     193     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
                 E-TTTTTTSEETTE......E-TTTTTSSEE CS
   Anti-TRAP  12 kCdaCngsGkiepeeprasleCPkCsGkgli 42 
                  C +C+gsG  e +    s  C +C+G+g++
  CCE27550.1 153 LCGQCKGSGGKEKA---KSAACERCKGNGMV 180
                 6********99988...7889*******987 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.4e-05
                 E-TTTTTTSEETTE......E-TTTTTSSE CS
   Anti-TRAP  12 kCdaCngsGkiepeeprasleCPkCsGkgl 41 
                  Cd+C+gsG++  e       C kC+Gk  
  CCE27550.1 197 LCDHCQGSGQVFKE----KDRCKKCKGKRT 222
                 5**********999....447******975 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.9    0.0015       3.5      68      96 ..     149     178 ..     130     185 .. 0.78
   2 ?    9.0   1.3   0.00062       1.4      70      99 ..     195     224 ..     190     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0015
                 --EEEETTTS-EEECHHH.HHS-TTTSSS- CS
        HypA  68 pvkvrCreCgkefeleek.alrCpkCgsad 96 
                 + +v C +C+ ++ +e++ ++ C++C++++
  CCE27550.1 149 NKQVLCGQCKGSGGKEKAkSAACERCKGNG 178
                 45789*****999977744889****9875 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00062
                 EEEETTTS-EEECHHHHHS-TTTSSS-EEE CS
        HypA  70 kvrCreCgkefeleekalrCpkCgsadvei 99 
                 +v C++C+ ++++ +++ rC+kC++++++ 
  CCE27550.1 195 TVLCDHCQGSGQVFKEKDRCKKCKGKRTTQ 224
                 689*****99997665679*****997654 PP

>> Malate_DH  Malate dehydrogenase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.7   0.00011      0.24      15      29 ..      25      39 ..      20      40 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
   Malate_DH 15 eqqraaLRkAALeYH 29
                eq + a RkAAL YH
  CCE27550.1 25 EQIKKAYRKAALKYH 39
                5556799******** PP

>> DUF1356  Protein of unknown function (DUF1356)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.3     0.019        43      22      43 ..     141     162 ..     123     171 .. 0.80
   2 ?   -2.2   0.4      0.88     2e+03      30      44 ..     166     180 ..     155     185 .. 0.83
   3 ?    6.7   0.5    0.0017       3.9      27      49 ..     190     212 ..     163     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.019
     DUF1356  22 vpyveatgrdsvtCptCqGtGe 43 
                   +v++++++ v C  C+G+G 
  CCE27550.1 141 GKTVKFAANKQVLCGQCKGSGG 162
                 56799***************95 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.88
     DUF1356  30 rdsvtCptCqGtGei 44 
                 ++s  C  C+G+G +
  CCE27550.1 166 AKSAACERCKGNGMV 180
                 56789*******987 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0017
     DUF1356  27 atgrdsvtCptCqGtGeiPreqe 49 
                 +  r+ v C  CqG+G++ +e++
  CCE27550.1 190 MMRRETVLCDHCQGSGQVFKEKD 212
                 567899***********998875 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.9     0.019        42      51      94 ..     130     175 ..     123     182 .. 0.62
   2 ?    7.3   1.7    0.0015       3.3      71     101 ..     193     225 ..     178     232 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.019
     TackOD1  51 eseelleelvkrglleeelvdrirlCpsCksghln...vrevCpkCk 94 
                 e + +leel+k ++++   +++++lC +Ck++  +      +C  Ck
  CCE27550.1 130 EYKVTLEELYKGKTVK-FAANKQVLCGQCKGSGGKekaKSAACERCK 175
                 5556677777766664.567888899999875443000344666665 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0015
     TackOD1  71 drirlCpsCksgh..lnvrevCpkCkSidieeq 101
                  +++lC++C+++   ++ ++ C+kCk  +++++
  CCE27550.1 193 RETVLCDHCQGSGqvFKEKDRCKKCKGKRTTQE 225
                 567889999876411566778999998776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3253.43
//
Query:       CCE27551.1  [L=285]
Description: related to SNF8 protein, involved in glucose derepression [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-69  233.5   0.0    2.3e-69  233.3   0.0    1.0  1  EAP30     EAP30/Vps36 family
  ------ inclusion threshold ------
       0.12   12.4   0.1       0.27   11.3   0.1    1.6  1  SRR1      SRR1


Domain annotation for each model (and alignments):
>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.3   0.0   2.5e-73   2.3e-69       1     235 [.       6     254 ..       6     255 .. 0.95

  Alignments for each domain:
  == domain 1  score: 233.3 bits;  conditional E-value: 2.5e-73
       EAP30   1 vGiaglqrreqtaaeyqdlgaellaealqdleallakfkesLvklaekhkakiksdpafraqftkmcaslGvdpl..ssk.............kseslg 84 
                 vGi++++r++ t+a+y+++g++l a+++q+le++la+f++ L+++a++h+++i+sdpafraqf++mc ++G+dpl  s +             + ++++
  CCE27551.1   6 VGIGAFDRSRLTSAHYASHGSSLRANNAQALETQLAVFRSLLQQFAQTHAKDIRSDPAFRAQFARMCTAIGIDPLasS-SssnnsdgsgsngaGGGGRS 103
                 7**************************************************************************852.35689****99998677777 PP

       EAP30  85 fl.ellg..lgdfyyeLavqivevclatraengglisleelyalvnrarggva...........lvspdDllraiekllvlgsglsvlqvggkkvvrSv 169
                  + +llg  + dfy+ Lav+ive+c atr enggli l e+ +++  +  g++            +s+dD++ra+ +l +lg+ + ++ vg+k+++rSv
  CCE27551.1 104 IWaQLLGktVHDFYFGLAVRIVEMCSATRGENGGLIGLREVRERLLAQG-GAEgvaggnssgsgGISEDDVRRAVGTLNPLGGSYGIVRVGHKEYIRSV 201
                 88*99999*************************************9655.76568999999999*********************************** PP

       EAP30 170 ptelntdqvevlevakrlvsllaekssgggvtaselaeeeenlgwsvarakeaLeelereGllwvD 235
                 p+el++dq++++e+a+ l         g +vt+s+l   +enl w++ar+++++++l++eG+lwvD
  CCE27551.1 202 PRELSNDQASAVEAAQAL---------G-FVTVSML---HENLAWDRARCRTVIDDLMAEGMLWVD 254
                 *****************9.........5.9******...889***********************9 PP

>> SRR1  SRR1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1     3e-05      0.27       5      46 ..       7      66 ..       5      74 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3e-05
        SRR1  5 GLGsfse................sssar...yQLAlllelveelkiessrsvyaqDPvfte 46
                G+G f++                  +a+    QLA++ +l +++ +++++  +  DP+f++
  CCE27551.1  7 GIGAFDRsrltsahyashgsslrANNAQaleTQLAVFRSLLQQFAQTHAK-DIRSDPAFRA 66
                8888888888888888888877744444568****************998.7888999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2073.08
//
Query:       CCE27552.1  [L=262]
Description: related to membrane protein, peroxisomal [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-10   40.8   2.5    6.8e-10   39.0   2.4    1.9  2  Mpv17_PMP22  Mpv17 / PMP22 family


Domain annotation for each model (and alignments):
>> Mpv17_PMP22  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.14   2.4e+03      13      32 ..     135     154 ..     130     161 .. 0.82
   2 !   39.0   2.4   3.8e-14   6.8e-10       6      61 ..     170     225 ..     164     226 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.14
  Mpv17_PMP22  13 eelkekfwptlkanwkvWpp 32 
                  + lk+k ++++++n+ + p+
   CCE27552.1 135 TSLKAKVMQIIISNLIIAPI 154
                  57899999999999988775 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 3.8e-14
  Mpv17_PMP22   6 ksleeikeelkekfwptlkanwkvWppaqlinFyfvPlkfRvlfvnvvslgWntyL 61 
                  ++ +++++++k  fw ++ ++w+  p++ ++  +f+P +++v+f+nvvs++ +ty+
   CCE27552.1 170 RTYHQVRATVKVGFWRVMRVSWVTSPICLAFAQKFLPDQLWVPFFNVVSFIIGTYI 225
                  78899**************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1907.05
//
Query:       CCE27553.1  [L=461]
Description: probable prephenate dehydrogenase (NADP) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-17   63.7   0.0    1.8e-17   63.2   0.0    1.2  1  PDH            Prephenate dehydrogenase
    2.3e-06   28.1   0.0    1.8e-05   25.2   0.0    2.2  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
     0.0021   18.2   0.0     0.0042   17.3   0.0    1.5  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
  ------ inclusion threshold ------
      0.023   14.1   0.0      0.041   13.2   0.0    1.4  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      0.058   13.3   0.0      0.094   12.6   0.0    1.4  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
       0.12   12.0   0.0       0.37   10.4   0.0    1.9  1  ApbA           Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0     6e-21   1.8e-17      33     253 ..      72     284 ..      41     288 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 6e-21
                 SSEEES-GGGGCCG.SEEEE-S-GGGHHHHHHHHHHHS-TT-EEEE--S--CHHHHHHHHHCC..GCEEEEEES---S-SSGGG--TTTTTT-EEEEEE CS
         PDH  33 vdeatddieavkea.divvlavPvevilevlkelaphlkedalitDvgsvKekvvreleellkegksfvgghPmaGteksGvdaareelfenavviLtP 130
                 + +++   + v+ a d v+ +v   vi +v+++  p  k +a++  ++s K   + + e++l+   ++++ h + G+   Gv+        +++ +L  
  CCE27553.1  72 EICQNG--HYVSRAsDYVIYSVEAAVIDRVIAQFGPSTKMGAIVGGQTSCKSPEIAAFEKHLPADIHIISCHSLHGP---GVNT------LGQPLVLIQ 159
                 444444..3455555**************************************************************...5543......5999****9 PP

                 -TTS-HHHHHHHHHHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHCHHCCCCHHHHCGTCCHHHHH....CGGGS-HHHHHHHHHHTHHH CS
         PDH 131 tektdkealekvkelleevgarvilmspeeHDrvvavvshlphvvaialaatlkekkndekeirklasggfrdvt....RiaksnPelwadilleNkea 225
                   + d eal kv  +l     + ++++++eHDr++a ++ ++h+++ ++ ++ +++++   e+ ++ +g+ +  +    Ri ++   ++a +++ N e 
  CCE27553.1 160 HRAPD-EALRKVETVLSCFRSKYVYLTAQEHDRITADTQAVTHAAFLSMGKAWHANSQFPWELNRYVGGIENVKIntmlRIYSQKWHVYAGLAILNPE- 256
                 99666.**************************************************************98554434455*******************. PP

                 HHHHHHHHHHHHHHHHHHHHTT-HHHHH CS
         PDH 226 vlealdkfikelkklkelienedaeeLv 253
                  ++++ +++k++++l +l+ ++d e L+
  CCE27553.1 257 AKQQVAQYAKSVTALYKLMLEGDLEGLR 284
                 89999******************99987 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   6.1e-09   1.8e-05       2      90 ..      17     112 ..      16     113 .. 0.79
   2 ?    0.0   0.0      0.44   1.3e+03      48      89 ..     156     196 ..     133     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 6.1e-09
                    EEEETTSHHHHHHHHHHHHTTS......-GGCEEEEEESSCCCHHHHHHHHC..-EEECECHHHHHH.H-SEEEE-S-HHHHHHHHHHCGHHHHTT CS
  F420_oxidored   2 igiiGaGnmgealasgllaaga......qpheivvansrnpekaeelaeelg..vkvtavdneeaae.eadvvvlavkpedveevlselakdalkg 88 
                    +g+iG+G+mg+  a +l+aag         + ++ a+   +++ ++l++e++   +++  +n   ++  +d v+ +v  ++++ v+++  ++++ g
     CCE27553.1  17 VGLIGMGDMGRMYADRLAAAGWrrlirdVRTRVL-AC-DREDRFDSLKKEYQgkKNIEICQNGHYVSrASDYVIYSVEAAVIDRVIAQFGPSTKMG 110
                    89*******************9997753333344.75.55789*********995555555777666599*****************997776666 PP

                    SE CS
  F420_oxidored  89 kl 90 
                     +
     CCE27553.1 111 AI 112
                    55 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.44
                    -EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTS CS
  F420_oxidored  48 vkvtavdneeaaeeadvvvlavkpedveevlselakdalkgk 89 
                    v +++++  ea+++ + v+ +++ ++v  +++e  ++  +++
     CCE27553.1 156 VLIQHRAPDEALRKVETVLSCFRSKYVYLTAQEH-DRITADT 196
                    6778888999999999999999999998888877.6555555 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.4e-06    0.0042       2      93 ..      17     120 ..      16     139 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.4e-06
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSH........HHHHHHHHTT.....EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT- CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtk........ekveelvaeg.....akaaesieelvasldvvitmvkagkavdeviegllealkkgd 84 
                    +g+iG+G MG+  a +l++ag++  + ++++        +++++l +e      ++++++   + ++ d vi  v+a + +d vi +  ++ k g+
     CCE27553.1  17 VGLIGMGDMGRMYADRLAAAGWRRLIRDVRTrvlacdreDRFDSLKKEYqgkknIEICQNGHYVSRASDYVIYSVEA-AVIDRVIAQFGPSTKMGA 111
                    79*******************99888885542444433345555554437788899999988888888******998.789999999999999888 PP

                    EEEE-S--- CS
  NAD_binding_2  85 ilidgstss 93 
                    i+   ++ +
     CCE27553.1 112 IVGGQTSCK 120
                    876555555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.4e-05     0.041      29      72 ..       7      50 ..       2      69 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
                  GSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHH CS
  2-Hacid_dh_C 29 llgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkke 72
                  ++ + +++  vG+iG+G++G+  a+rl+a g + ++ d++ +  
    CCE27553.1  7 MTPNGMEDFVVGLIGMGDMGRMYADRLAAAGWRRLIRDVRTRVL 50
                  5666778889*********************9999988887644 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.2e-05     0.094       2      53 ..      17      68 ..      16     126 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.2e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTT CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekg 53
                v+ iG G mG+  a  +a+ag +  + d++++ l+  +e   +sl+k  + +
  CCE27553.1 17 VGLIGMGDMGRMYADRLAAAGWRRLIRDVRTRVLACDREDRFDSLKKEYQGK 68
                899*****************************99999988888887765533 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00013      0.37       2      39 ..      18      64 ..      17     113 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
                EEES-SHHHHHHHHHHHHHTHC.........EEEE-SCHHHHHHHHH CS
        ApbA  2 ailGaGaiGsllaakLakagad.........vtlilrsrrlealkkn 39
                  +G+G +G+++a +La+ag+          v  ++r++r+++lkk+
  CCE27553.1 18 GLIGMGDMGRMYADRLAAAGWRrlirdvrtrVLACDREDRFDSLKKE 64
                579******************99999999999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3271.01
//
Query:       CCE27554.1  [L=365]
Description: related to alpha-tubulin suppressor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-30  104.4  13.1    1.7e-10   41.3   0.0    6.7  7  RCC1      Regulator of chromosome condensation (RCC1) repeat
    1.7e-22   78.7  24.8    5.2e-09   35.7   0.8    5.7  5  RCC1_2    Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   1.9e-14   1.7e-10       4      50 .]       5      54 ..       3      54 .. 0.87
   2 ?   -3.3   0.1       1.7   1.5e+04       2      17 ..      58      73 ..      57      79 .. 0.75
   3 !   19.6   0.0   1.1e-07     0.001       3      50 .]     123     173 ..     123     173 .. 0.80
   4 !   17.0   0.0   7.5e-07    0.0067       1      43 [.     176     216 ..     176     222 .. 0.82
   5 !    7.4   0.7   0.00078         7       1      15 [.     268     282 ..     268     282 .. 0.89
   6 ?    3.6   0.0     0.012     1e+02      36      50 .]     288     303 ..     283     303 .. 0.73
   7 !   18.7   0.2   2.3e-07    0.0021       1      20 [.     306     325 ..     306     358 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.9e-14
                EEEEE--GGGTTSSSS---EEEEEE-GGGTTS...-EEEEEEETTEEEEE CS
        RCC1  4 VysWGrndyGqLGlgttesvlvPtkveglsgn...rvvkvacGddhtval 50
                +y+ G+n  GqLG+g++e+v+vP+ v++ +     +v+++a+G++ht+ l
  CCE27554.1  5 IYAIGSNGSGQLGIGHKEDVSVPKPVQFYPTPpvsEVISIAAGGNHTLIL 54
                8*********************9999665544566************975 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.7
                TEEEEEE--GGGTTSS CS
        RCC1  2 GrVysWGrndyGqLGl 17
                G++y  G  + G +G+
  CCE27554.1 58 GELYWSGDCSSGACGI 73
                7888888778888886 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 1.1e-07
                 EEEEEE--GGGTTSSSS-.--EEEE..EE-GGGTTS..-EEEEEEETTEEEEE CS
        RCC1   3 rVysWGrndyGqLGlgtt.esvlvP..tkveglsgn..rvvkvacGddhtval 50 
                 rV+s+G + +G LG g    +   P  +++++++ +  +vv+ ++   h+va+
  CCE27554.1 123 RVFSFGMGMKGELGSGEFvIRT--PvaSLIPNFPPQdtEVVDFSASMGHVVAV 173
                 8*****************5444..64455555555558************996 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 7.5e-07
                 TTEEEEEE--GGGTTSSSS---EEEEEE-GGGTTS-EEEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgttesvlvPtkveglsgnrvvkvacG 43 
                 +G+ y+WG+  +GqLG + + ++  P+k+++ +  +v  ++c 
  CCE27554.1 176 NGDAYGWGNCRKGQLGEPLKITH-EPRKITNIN-FKVARAVCT 216
                 5999***************9666.6****9986.488888885 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.00078
                 TTEEEEEE--GGGTT CS
        RCC1   1 dGrVysWGrndyGqL 15 
                 dG + +WGr+d+GqL
  CCE27554.1 268 DGTLRGWGRDDHGQL 282
                 677779********9 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.012
                 -EEE.EEEETTEEEEE CS
        RCC1  36 rvvk.vacGddhtval 50 
                 +v+k +a G+ h val
  CCE27554.1 288 PVIKkIAIGSEHAVAL 303
                 45555*********97 PP

  == domain 7  score: 18.7 bits;  conditional E-value: 2.3e-07
                 TTEEEEEE--GGGTTSSSS- CS
        RCC1   1 dGrVysWGrndyGqLGlgtt 20 
                 dG+V+sWG++++G +G + +
  CCE27554.1 306 DGDVLSWGWGEHGNCGPQVE 325
                 9***************7554 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.1    0.0072        64      18      30 .]       3      15 ..       2      15 .. 0.89
   2 !   23.6   0.9   3.5e-09   3.1e-05       1      21 [.      41      61 ..      41      72 .. 0.90
   3 !   12.3   0.8   1.3e-05      0.11       1      29 [.     160     188 ..     160     189 .. 0.80
   4 !   18.2   0.4   1.7e-07    0.0015       2      30 .]     253     281 ..     252     281 .. 0.87
   5 !   35.7   0.8   5.7e-13   5.2e-09       1      29 [.     290     318 ..     290     321 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0072
      RCC1_2 18 GeVlcWGsNsdGQ 30
                +++++ GsN++GQ
  CCE27554.1  3 QAIYAIGSNGSGQ 15
                57899*******9 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 3.5e-09
      RCC1_2  1 VksvsaGdyHscaLtedGeVl 21
                V+s++aG++H+++Lt +Ge++
  CCE27554.1 41 VISIAAGGNHTLILTQSGELY 61
                89******************9 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 1.3e-05
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdG 29 
                 V++ sa   H +a++++G+ ++WG+   G
  CCE27554.1 160 VVDFSASMGHVVAVLDNGDAYGWGNCRKG 188
                 566677778***************85555 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 1.7e-07
      RCC1_2   2 ksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 ++v +G+     L+edG++++WG++++GQ
  CCE27554.1 253 IDVRSGWGAVYMLMEDGTLRGWGRDDHGQ 281
                 677778888888****************9 PP

  == domain 5  score: 35.7 bits;  conditional E-value: 5.7e-13
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdG 29 
                 +k++++G+ H++aL+edG+Vl+WG+ ++G
  CCE27554.1 290 IKKIAIGSEHAVALSEDGDVLSWGWGEHG 318
                 799**********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2645.50
//
Query:       CCE27555.1  [L=296]
Description: related to rad9 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-13   51.3   0.0    1.3e-13   51.0   0.0    1.1  1  Rad9      Rad9


Domain annotation for each model (and alignments):
>> Rad9  Rad9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   7.4e-18   1.3e-13     143     249 ..       2     111 ..       1     112 [. 0.92

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 7.4e-18
        Rad9 143 ehfsssleeitielakervllksyeeeekdn....kkalstelsideeeFeqyqlaedveitlslkefkallvfaeslsaslslafdeaGkPllltikk 237
                 +hf    e + i+   ++v ++ ++e+++ +    kk+l+t + i+ +eF++++++ + +i +s+k+f+a++  a ++ + +s+ ++ + kP++l+ + 
  CCE27555.1   2 DHFGPGIEYLDINTDGDHVNFTCFSEKTISEdavlKKPLQTSIAIEADEFDDIDVEDKLHIVISVKDFRAIIQHAGVTGNAISARYSLPAKPIHLSYSG 100
                 799999999*****************9998877878************************************************************995 PP

        Rad9 238 lslleakfilaT 249
                    l ++f + T
  CCE27555.1 101 -DALSCEFLVMT 111
                 .57777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2058.12
//
Query:       CCE27556.1  [L=207]
Description: uncharacterized protein CPUR_01030 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-06   27.4   0.2    6.8e-06   26.7   0.2    1.3  1  FAR1             FAR1 DNA-binding domain
    0.00013   21.8   1.3     0.0011   18.9   0.3    2.3  2  Sugarporin_N     Maltoporin periplasmic N-terminal extension
      0.006   17.0   0.1     0.0087   16.5   0.1    1.3  1  AFT              Transcription factor AFT
     0.0097   16.1   0.2      0.038   14.2   0.1    2.0  2  XhlA             Haemolysin XhlA
  ------ inclusion threshold ------
      0.016   15.6   0.2      0.044   14.2   0.2    1.8  1  Snapin_Pallidin  Snapin/Pallidin
      0.046   12.1   0.0      0.061   11.7   0.0    1.1  1  Hemagglutinin    Haemagglutinin
       0.05   14.0   0.6       0.37   11.2   0.4    2.1  2  CLZ              C-terminal leucine zipper domain of cyclic n
       0.28   11.1   2.2        1.4    8.9   1.1    2.5  2  Matrilin_ccoil   Trimeric coiled-coil oligomerisation domain 


Domain annotation for each model (and alignments):
>> FAR1  FAR1 DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.2   3.1e-09   6.8e-06       7      87 ..      31     109 ..      27     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 3.1e-09
        FAR1   7 akrvGFsvrvkksrrsrkdgeiirrkfvCskeGfkkekkktkeakrerastrtgC..kAmlvvkkekegkwvvtklvkeHNHe 87 
                 ak  G+++ + ++++  +dg+ +r ++vC + G+k +++++   kr+ ++ +++C  +A+ v   +  ++w+    ++ HNHe
  CCE27556.1  31 AKDQGYGIVKLRASNY-RDGKPTRYDLVCDRGGVKYNSTAK---KRNPSTRKIDCpfRAKAVCEVQLGNQWRFALQEARHNHE 109
                 8889999998888777.5677**************999998...7777888999955588889999999*************8 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.3   4.7e-07    0.0011      27      54 ..     148     175 ..     138     176 .. 0.89
   2 ?    2.4   0.0     0.068   1.5e+02      27      36 ..     176     185 ..     172     186 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.7e-07
  Sugarporin_N  27 tiEaRLaaLEkrLqeAeqraqaAearak 54 
                    iE+RL+  Ekr++  e+ra  +e r +
    CCE27556.1 148 RIEQRLENIEKRMENLEARAGGYEPRFQ 175
                   59*******************9999876 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.068
  Sugarporin_N  27 tiEaRLaaLE 36 
                   +iE RL  +E
    CCE27556.1 176 SIESRLQNME 185
                   8888888888 PP

>> AFT  Transcription factor AFT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   3.9e-06    0.0087      63     110 ..      61     109 ..      27     110 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.9e-06
                 .........XXXXXXXXXX----EEEEEEETTT.TEEEEEEEE---SS- CS
         AFT  63 eeetsskkkkkkravsrynsCPfrvratyslkr.kkWsivvvnnehshe 110
                 ++ + +++ kk++ ++r+  CPfr +a   ++  ++W+  + +  h+he
  CCE27556.1  61 GGVKYNSTAKKRNPSTRKIDCPFRAKAVCEVQLgNQWRFALQEARHNHE 109
                 4556678889999999***************97479***********96 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.7e-05     0.038       7      45 ..     147     185 ..     141     187 .. 0.88
   2 ?    2.4   0.0     0.084   1.9e+02       7      27 ..     175     196 ..     169     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.7e-05
        XhlA   7 erietkldnleervdkleekaaeaeekiknleedlkkle 45 
                  rie++l+n+e+r++ le +a   e + +++e +l ++e
  CCE27556.1 147 LRIEQRLENIEKRMENLEARAGGYEPRFQSIESRLQNME 185
                 599****************99999999999999999987 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.084
        XhlA   7 erietkldnlee.rvdkleeka 27 
                 + ie++l n+e  r+d + ++ 
  CCE27556.1 175 QSIESRLQNMEGpRMDGIGMDD 196
                 679********99999887765 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   1.9e-05     0.044      32      80 ..     124     168 ..     118     185 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.9e-05
  Snapin_Pallidin  32 LleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlq 80 
                      L+ ++++ ++kL++l+++      + + +  ++L ni+krm++l+ r  
       CCE27556.1 124 LATTIRSFTNKLDRLSHDMA----QGFLRIEQRLENIEKRMENLEARAG 168
                      67788888888888887666....5555567888888888888887754 PP

>> Hemagglutinin  Haemagglutinin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.7e-05     0.061     372     411 ..     127     166 ..     117     177 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.7e-05
                    HHHHHHHHHHHHHHHTTTEEEBXSSXXTTTTHHHHHHHHH CS
  Hemagglutinin 372 ainkitkkvnsliekenkqleavgkelnelekrieeldkk 411
                    +i   t+k++ l++ + + + ++ + l+++ekr+e+l+ +
     CCE27556.1 127 TIRSFTNKLDRLSHDMAQGFLRIEQRLENIEKRMENLEAR 166
                    68899********************************976 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   0.00017      0.37      36      71 .]     124     159 ..     118     166 .. 0.87
   2 ?    0.3   0.0      0.42   9.4e+02      28      44 ..     169     185 ..     159     187 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
         CLZ  36 LessLeaLqtrlarLlaeyessqrkLkqRitkLEkk 71 
                 L +++ +++++l rL  ++ +   +++qR++++Ek+
  CCE27556.1 124 LATTIRSFTNKLDRLSHDMAQGFLRIEQRLENIEKR 159
                 677888999999999999999999999999999985 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.42
         CLZ  28 eleekverLessLeaLq 44 
                   e + +++es+L++++
  CCE27556.1 169 GYEPRFQSIESRLQNME 185
                 45556666666666664 PP

>> Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.1   0.00062       1.4      28      44 ..     150     166 ..     125     167 .. 0.78
   2 ?   -2.2   0.0       1.8     4e+03      33      42 ..     176     185 ..     173     186 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00062
                     HHHHHHHHHHHHHHHHH CS
  Matrilin_ccoil  28 tqkLeavtkRlealEnk 44 
                      q+Le++ kR+e lE +
      CCE27556.1 150 EQRLENIEKRMENLEAR 166
                     467************87 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.8
                     HHHHHHHHHH CS
  Matrilin_ccoil  33 avtkRlealE 42 
                     ++ +Rl+ +E
      CCE27556.1 176 SIESRLQNME 185
                     5667888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      756  (0.0421663); expected 358.6 (0.02)
Passed Vit filter:                       135  (0.0075297); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1491.87
//
Query:       CCE27557.1  [L=123]
Description: uncharacterized protein CPUR_01031 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.074   13.3   0.1          1    9.6   0.0    2.1  2  DUF4611   Domain of unknown function (DUF4611)
       0.11   12.5   0.0       0.16   12.0   0.0    1.3  1  DUF1816   Domain of unknown function (DUF1816)


Domain annotation for each model (and alignments):
>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00012         1      20      53 ..      22      55 ..      13      68 .. 0.83
   2 ?    2.1   0.1     0.025   2.2e+02      28      59 ..      62      92 ..      55     106 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00012
     DUF4611 20 eapgeadrlksllsgvaqlreevsellstlveqe 53
                +     +rlk l     qlr  ++++l++l++++
  CCE27557.1 22 QLDHAMKRLKLLYIKARQLRGTIPKMLDPLIQKQ 55
                44455789999*99******************97 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.025
     DUF4611 28 lksllsgvaqlreevsellstlveqeaqddva 59
                + s + +va+ + +v+e+ ++l + e++ +  
  CCE27557.1 62 FNSFVKAVAEAQSNVAEF-TELMRDEKSKQIF 92
                677777888888888774.5555555333332 PP

>> DUF1816  Domain of unknown function (DUF1816)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.8e-05      0.16      29      61 ..      69     102 ..      55     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
     DUF1816  29 ekeaeaaksgYleDLesEgaqgikvkikrck.pe 61 
                   ea+++ +++ e +++E++++i ++++r++  +
  CCE27557.1  69 VAEAQSNVAEFTELMRDEKSKQIFTHVERSRqED 102
                 479**************************99444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 935.96
//
Query:       CCE27558.1  [L=116]
Description: probable ribosomal protein L34.e [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-44  149.7   2.5    3.1e-44  149.2   2.5    1.2  1  Ribosomal_L34e  Ribosomal protein L34e
  ------ inclusion threshold ------
       0.15   12.4   0.2       0.15   12.4   0.2    1.9  2  PDGF            PDGF/VEGF domain


Domain annotation for each model (and alignments):
>> Ribosomal_L34e  Ribosomal protein L34e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.2   2.5   3.4e-48   3.1e-44       1      94 []       1      95 [.       1      95 [. 0.99

  Alignments for each domain:
  == domain 1  score: 149.2 bits;  conditional E-value: 3.4e-48
  Ribosomal_L34e  1 Mv.qrltyrrrlsYntrsnkvrvvktpggklvyqykkkkgkapkCgdckkkLqGipalrpkelsrlsktkktvsRaYGgslcakcvkerivrafl 94
                    M+ qr+tyrrr+ Yntrsn++rvvktpgg+l+++++kk+g++pkCgdc++kL Gipalrp+e+s++sk +ktv+RaYGgs+c+ cv++rivrafl
      CCE27558.1  1 MApQRVTYRRRNGYNTRSNRTRVVKTPGGELRLLHIKKRGTVPKCGDCGSKLIGIPALRPREYSQISKPQKTVQRAYGGSRCGGCVRDRIVRAFL 95
                    7779******************************************************************************************8 PP

>> PDGF  PDGF/VEGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.26   2.4e+03      29      37 ..      42      50 ..      36      77 .. 0.76
   2 ?   12.4   0.2   1.7e-05      0.15      30      64 ..      80     114 ..      78     116 .] 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.26
        PDGF 29 vqRCsGCCn 37
                v +C+ C++
  CCE27558.1 42 VPKCGDCGS 50
                667888775 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.7e-05
        PDGF  30 qRCsGCCndesleCvptetekvtvqvlkikeakkk 64 
                 +RC+GC  d+ ++   +e++k+ ++vlk +e+++k
  CCE27558.1  80 SRCGGCVRDRIVRAFLIEEQKIVKKVLKEQEQSQK 114
                 6**************************99554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 919.40
//
Query:       CCE27559.1  [L=153]
Description: uncharacterized protein CPUR_01033 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-28   96.4   0.0    1.1e-27   96.2   0.0    1.1  1  DUF498    Protein of unknown function (DUF498/DUF598)


Domain annotation for each model (and alignments):
>> DUF498  Protein of unknown function (DUF498/DUF598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.0   6.2e-32   1.1e-27       1     109 []      12     137 ..      12     137 .. 0.87

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 6.2e-32
                 EEEEESSEEEE.TTEE...ESSEEEE-SSSEEE-T...........HCS.TTCEECHHHHHHCT..T..SEEEEE-TTS-----HHHHHHHHCCTSEEE CS
      DUF498   1 idaygeggfel.ngvk...ysgsllvlpeeafawd...........vak.aedlteeslellellepkpellilGtGkrqlplspevrealnelgigve 83 
                 +d + ++gf l +g +   ++g+llv  +eaf+w+           +++   dl  e+++l+++l+p+p+llilG+Gkr lplspe+r ++ +lg++ve
  CCE27559.1  12 VDVCMHDGFGLnSGITikdGDGALLVN-GEAFSWRpwiamesleltNKNgQFDLPLEAFGLFDILWPRPDLLILGVGKRNLPLSPETRMHIAQLGMRVE 109
                 567999999996665555589999999.99****555877777774344466666******************************************** PP

                 EE-HHHHHHHHHHHHHHT..--EEEEEE CS
      DUF498  84 vmdtraAartyNllaaeg..rrVaaaLi 109
                 v+dtr+Aa+++Nlla+e+   ++aaaLi
  CCE27559.1 110 VLDTRNAASQFNLLATERgtSEIAAALI 137
                 ******************999*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1153.12
//
Query:       CCE27560.1  [L=1248]
Description: probable PHO8-repressible alkaline phosphatase vacuolar [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-103  347.4   0.0   1.6e-103  346.9   0.0    1.2  1  Alk_phosphatase  Alkaline phosphatase
    6.8e-18   66.1   1.0    6.8e-18   66.1   1.0    3.1  4  Abhydrolase_6    Alpha/beta hydrolase family
    5.9e-17   62.2   0.2    4.4e-16   59.3   0.0    2.5  2  Abhydrolase_1    alpha/beta hydrolase fold
    2.4e-12   46.7   0.0      2e-11   43.6   0.0    2.4  1  Hydrolase_4      Serine aminopeptidase, S33
    2.2e-08   34.0   0.0    5.3e-08   32.7   0.0    1.6  1  DSPc             Dual specificity phosphatase, catalytic doma
    9.2e-05   21.9   0.0    0.00017   21.1   0.0    1.3  1  Metalloenzyme    Metalloenzyme superfamily
    0.00014   21.8   0.0    0.00028   20.8   0.0    1.4  1  Abhydrolase_3    alpha/beta hydrolase fold
    0.00027   21.1   0.0    0.00072   19.7   0.0    1.7  1  Thioesterase     Thioesterase domain
    0.00044   19.9   0.0    0.00091   18.9   0.0    1.4  1  Y_phosphatase    Protein-tyrosine phosphatase
    0.00059   19.6   0.0     0.0074   16.0   0.0    2.2  2  PGAP1            PGAP1-like protein
    0.00083   19.5   0.0     0.0016   18.6   0.0    1.5  1  PTPlike_phytase  Inositol hexakisphosphate
    0.00086   18.9   0.0        1.7    8.2   0.0    2.9  3  DLH              Dienelactone hydrolase family
     0.0048   16.5   0.0      0.011   15.3   0.0    1.5  1  LIDHydrolase     Lipid-droplet associated hydrolase
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.031   14.1   0.0    1.4  1  Lipase_3         Lipase (class 3)
      0.027   14.8   0.1      0.091   13.0   0.1    1.8  1  RskA             Anti-sigma-K factor rskA
       0.03   14.0   0.0       0.36   10.5   0.0    2.3  1  FSH1             Serine hydrolase (FSH1)
      0.037   13.5   0.0      0.074   12.5   0.0    1.4  1  DUF900           Alpha/beta hydrolase of unknown function (DU
      0.043   13.4   0.0      0.084   12.4   0.0    1.4  1  DUF3089          Protein of unknown function (DUF3089)
      0.073   12.0   0.0       0.14   11.0   0.0    1.4  1  Chlorophyllase2  Chlorophyllase enzyme
      0.074   13.0   0.0          1    9.2   0.0    2.3  2  BAAT_C           BAAT / Acyl-CoA thioester hydrolase C termin
       0.14   11.3   0.0       0.21   10.7   0.0    1.2  1  LCAT             Lecithin:cholesterol acyltransferase


Domain annotation for each model (and alignments):
>> Alk_phosphatase  Alkaline phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.9   0.0  1.8e-106  1.6e-103       1     414 [.     756    1207 ..     756    1209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 346.9 bits;  conditional E-value: 1.8e-106
                       -SEEEEEEETT-SHHHHHHHHHHHCHCTCSSSTTS.TTGGG-SEEEEEESSECSTTSSGHHHHHHHHHHSSBTBTT-BSB-TTST-B---HH CS
  Alk_phosphatase    1 aknvilligDGmgvstvtaaRslkeqakdklgeetllamdrfplvglsktyavdkqvtDSaataTAyacgvktyngaigvdaaagkevksvl 92  
                       ++n++++++DGmg+++++ +Rs+++ a++ +  + l+ + +f   g+s+t+++++ vtDSaa+aTA++cg k+yngai+v ++ ++++ svl
       CCE27560.1  756 KRNLVFMVSDGMGPASLSLTRSYRQYAHGLPEGDVLTLDKHF--WGSSRTRSSNSLVTDSAAGATAFSCGKKSYNGAISVLPD-HQPCGSVL 844 
                       69*****************************88988888888..***************************************.******** PP

                       HHHHHTT-EEEEEEEEETTSHHHHTTTTTBSSTTSSSHHHSTCCCHHTTS-SHHHHHHHCST-SEEEEESCGGGSBCSBCTSSTCCT.SBHH CS
  Alk_phosphatase   93 eaAkkaGkstGlVtTtritdAtPaalvahvesRkwkedaavpaealeegkkdiaeqlikakkidvllGGGrkeffpaeyatdGerkdGrnli 184 
                       eaAk+aG++tGlV+Tt itdAtPa + +hv  R++++++a          ++i + ++ +  +d++lGGGr +f+p+ +a+  +  d  +++
       CCE27560.1  845 EAAKRAGYATGLVVTTDITDATPACFASHVLLRQMQDEIA---------LQEIGQGPLGR-SVDLMLGGGRCHFLPNSTADSCRLDD-VDVV 925 
                       *********************************9999988.........899********.**************999988876666.**** PP

                       HHHCCT.TCEEE-SHHHHHHHCTST..SSCEEEESSSSSCS-CCCSCT..CCE--HHHHHHHHHHHH....TTSTT-EEEEEEETCHHHHHH CS
  Alk_phosphatase  185 eeakkk.gyqyvsdrkeLlkakeen..vkplLGLFadgdlkveldrde..atdPsLkemtevAiklL....sknekGFFLlVEGsrIDhaaH 267 
                       + ak+k g+ y + r+++   +     + plLGLFa  d+++eldr +  +++PsL+em ++A+k+L     k ++GFFL++EGsrIDha+H
       CCE27560.1  926 KLAKEKyGWGYADSRASFDDLDGGDkvQLPLLGLFATTDVPFELDRRNmnDMYPSLSEMAKTALKALekstAKSDRGFFLMIEGSRIDHAGH 1017
                       ***9888**********998876655789*****************8622567**************88777788***************** PP

                       TTTHHHHHHHHHHHHHHHHHHHHHCHH.CTTEEEEEEESSEESEEEESTTST.......T..TTSEECCEET.TTSSEE............. CS
  Alk_phosphatase  268 endavgalsEvvefdeAvkaalefakk.eketlvvvTaDHshvfsfggyttr.......gesvlglepllaa.dkkpvl............. 337 
                        nd++ +++Ev+e d+A++a+l+f +   +et++v+T+DH++    gg+ t        + + +++++l++  ++ + l             
       CCE27560.1 1018 INDPAAQVREVLEYDKAFAAVLDFIDSsATETVLVATSDHET----GGLATAlqepghwPVYDWFPQALANVsESCEKLatrlqkhvsdpsp 1105
                       ************************998799************....777776677888899*******9998566666699*********** PP

                       .........................CEEECCSTT...BTTB.....HHHHTSTT....EEE..SSHTEE-SSEEEEEE.STTGGGGSCEEEC CS
  Alk_phosphatase  338 .........................lllYgngeetkelkgvredvtakeskeadyrkraavpltseeHtgedvavfAy.gpkaelvrGvqeq 403 
                                                l + + ++e+ +l  +++d+ +++++ a  + ra++++++++Ht++dv+++   gp  e++rG+ e+
       CCE27560.1 1106 tkvssssinkedlkrwintelvipgLGISDATDEELTLLAEHADA-SISTFAAMISLRAHIGWSTHGHTAVDVNIYSSgGPGTERIRGNVEN 1196
                       ************999999999877655555555544433333333.344566669*********************873699********** PP

                       CHHHHHHHHHC CS
  Alk_phosphatase  404 teiakvlaaal 414 
                       tei+++l   l
       CCE27560.1 1197 TEIGQFLSHYL 1207
                       *****998765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   1.0     8e-21   6.8e-18       1     198 [.      69     307 ..      69     328 .. 0.66
   2 ?   -0.5   0.6       1.9   1.6e+03     147     211 ..     616     678 ..     580     686 .. 0.59
   3 ?   -2.7   0.0       8.5   7.3e+03     140     209 ..     819     907 ..     693     915 .. 0.51
   4 ?   -2.8   0.0       9.3   7.9e+03      49      49 ..    1027    1027 ..     931    1075 .. 0.63

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 8e-21
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHC..HHH.HHHHCCTT........TTSEEEEEETCHHHHHHHHHHCC. CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldledl..adl.aalldelaa......gggpvvlvGHSlGGalalaaapla. 86 
                    +++++G+g+s  +++  pL++ l +   +l++D+pG Grs    ++++++  +   a+l + +++          +vl+GHS+G+ala+++a+++ 
     CCE27560.1  69 LVFIPGLGGSVAQFY--PLLNSLVDLAPCLSIDFPGGGRSRYTNTSWDAYttD-AlANLFETVIEeyrdaeLNQGIVLIGHSMGTALAAQLARHTe 161
                    79****999977887..887777777566******************884322.1344333333344446655667**************99999* PP

                    ...........EEEEES-..----TTTS----TTHHHHHHTT-C...CCCHCCH.....S-HSCCCCHHH......C.....CCCHCHCCCGHH.. CS
  Abhydrolase_6  87 .........lvvgvlldppptalpagllaaalelllallallrl...lawlsre.....plprlfladed......a.....daawrarlarla.. 152
                             +v+ v+++p  ta+p+++++ al   l +++  ++    aw+ ++     +++ +f+++e+      +     +++ ++ ++r+a  
     CCE27560.1 162 dhetsiakhIVAIVAICP--TAGPPDEQQSALLRRLLWIPGWMFglwRAWDGMGgldspSVS-RFVGKEAdrelrtMqyrfnQQSRTPVWRRMAyg 254
                    *****99865555*****..888888877777777777776666334555544456553333.888888866444314455545555555555533 PP

                    ......HHCCHHCHTTCCHHTT-TTGCEEECTT-C..HHHHCHHCCCHSTTEEE CS
  Abhydrolase_6 153 ......allaglgllpaaawadlpvpllvlggeDp..lvprllerllaqagarl 198
                          +  ++ gl  ++awa + +p+l+++geD+  + p  +++++  a +++
     CCE27560.1 255 alpmyiQGKPKGGLVGLDAWASIKAPILLIAGEDDhlTPPTEVQKIMD-ALEGV 307
                    333333333344466799*********999877774544455666666.66655 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
                    CCCGHHHHCCHHCHTTCCHHTT-TTGCEEECTT-CHHHHCHHCCCHSTTEEET....CE...SSS-HHH CS
  Abhydrolase_6 147 rlarlaallaglgllpaaawadlpvpllvlggeDplvprllerllaqagarlp....vvlpgaGHlphl 211
                      a +++ ++++   p +++++  ++l++ + + p+++   ++ l+ ++ r+p      l +++H++++
     CCE27560.1 616 LPALHRPPRSHFL--PQPDLTHWSARLMI-APTTPVLH--GQCKLQ-NVSRYPppqlLWLIYSSHHFLD 678
                    2222222222222..33355555555544.77777777..557777.5555555555666677776665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 8.5
                    C....CCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEE..CTT-C................HHHHCHHCCCH.STTEEETCE...SSS-H CS
  Abhydrolase_6 140 a....daawrarlarlaallaglgllpaaawadlpvpllvl..ggeDp................lvprllerlla.qagarlpvvlpgaGHlp 209
                    a    + +++ + + l++ +++   l a a ++  ++ lv+    +D+                 ++  l+++++   g+ + +++ g+G ++
     CCE27560.1 819 AfscgKKSYNGAISVLPDHQPCGSVLEA-AKRAGYATGLVVttDITDAtpacfashvllrqmqdEIA--LQEIGQgPLGRSV-DLMLGGGRCH 907
                    1333345555555555555554443322.22222222234322233333344433332111111122..3333333344444.6666666554 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 9.3
                     H CS
  Abhydrolase_6   49 d 49  
                     +
     CCE27560.1 1027 E 1027
                     1 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   5.2e-19   4.4e-16       1     236 [.      67     304 ..      67     324 .. 0.75
   2 ?   -2.4   0.0       3.4   2.9e+03     108     157 ..     388     437 ..     383     460 .. 0.81

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 5.2e-19
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH.HH...HHHCTTSSEEEEEETHHHHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddld.ri...ldalgddkltlvGhSmGGmialayaa 92 
                    p+lv+++Gl+gs   ++   l + L +  + ++ +D +G g+S+   ++  d y+t+++a+ ++  i   +da  ++ ++l+GhSmG+++a+++a 
     CCE27560.1  67 PLLVFIPGLGGSVAQFYP--LLNSLVD-LAPCLSIDFPGGGRSRYTNTSW-DAYTTDALANLFEtVIeeyRDAELNQGIVLIGHSMGTALAAQLAR 158
                    78****************..*****98.***************8766644.9************555999*************************9 PP

                    HH.......GGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHH.HCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHH CS
  Abhydrolase_1  93 ey.......perVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagpll.adelaaleqrhrlvdalkfpdkskrfpssgsdnass 180
                              +++ a+v++++    a + ++q+ ++ +   +  g+     r ++g+ + ++++   ++  ++  +l  + +  rf+++++++ + 
     CCE27560.1 159 HTedhetsiAKHIVAIVAICP---TAGPPDEQQSALLRRLLWIPGWMFGLWRAWDGMGGlDSPSVSRFVGKEADREL--RTMQYRFNQQSRTP-VW 248
                    999999555555555555555...66666666666666666666666666666666643144555555555555566..88888888866544.44 PP

                    HHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCH.HHHHHHHHC CS
  Abhydrolase_1 181 latgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvpp.kaledlaql 236
                      +       +++ ++++ l + + +   ++ap+l+i+g++D+l+pp +++  +++l
     CCE27560.1 249 RRMAYGALPMYIQGKPKGGLVGLDAW-ASIKAPILLIAGEDDHLTPPtEVQKIMDAL 304
                    44444467778888888888888888.88******************6666666544 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.4
                    SSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHH CS
  Abhydrolase_1 108 dpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrl 157
                     pa+ +   q ++++s+ +    y +  ar  ag+++++ + +++qr++l
     CCE27560.1 388 QPAHPHQVVQSFIMPSPANHTLLYMPRYARVLAGLISDFLASHVTQRLSL 437
                    67888888899999999999999999999999**************9996 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   2.4e-14     2e-11       6     218 ..      68     305 ..      63     313 .. 0.76

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 2.4e-14
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDl.aafvekvkeehpel....plfllGhSmGGliallyllryp 98 
                  ++v+++Gl+ ++ ++  l + L++    ++ +D  G Grs   r   +s+d y++D+ a ++e+v ee++++     ++l+GhSmG ++a++++ + +
   CCE27560.1  68 LLVFIPGLGGSVAQFYPLLNSLVDL-APCLSIDFPGGGRS---RYTNTSWDAYTTDAlANLFETVIEEYRDAelnqGIVLIGHSMGTALAAQLARHTE 161
                  6888888888888888888888887.56899*********...7778899999998524446666666666555559*****************5555 PP

  Hydrolase_4  99 d.......kvaglilsaPalkikaklkappllklllkllgkllpklqv.........................snnlkadslsrdpevva.ayeadpl 163
                  d       ++ +++ ++P  +++ +   ++ll+ ll++ g+++  ++                          +++  +++ sr p  ++ ay a p+
   CCE27560.1 162 DhetsiakHIVAIVAICPTAGPPDEQ-QSALLRRLLWIPGWMFGLWRAwdgmggldspsvsrfvgkeadrelrTMQYRFNQQSRTPVWRRmAYGALPM 258
                  55568887888********9999885.8999999*******************999988877777766666666666666666666444446666666 PP

  Hydrolase_4 164 v.hgkitvrlllelldamkrleeraakitlPllllhGeaDkvvdpeasrelyerlg 218
                  + +gk++ +l           ++  a+i++P+ll+ Ge+D++++p + ++++++l 
   CCE27560.1 259 YiQGKPKGGL---------VGLDAWASIKAPILLIAGEDDHLTPPTEVQKIMDALE 305
                  6444433322.........2345556778*******************99999875 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   6.3e-11   5.3e-08      72     116 ..     570     614 ..     501     634 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 6.3e-11
                 TT-EEEEEESSSSSHHHHHHHHHHHHHHTSCHHHHHHHHHHHSTT CS
        DSPc  72 kgkkvlVHCqaGisRSatliiaYlmktknlslneayeflkerrpa 116
                 +++ + VHC  G +R++++i++Yl+++ ++ ++ea++ +   rp+
  CCE27560.1 570 EKRVIGVHCHYGFNRTGYFIVCYLIERCGMGVQEAIDCFARARPN 614
                 566789********************************9888875 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     2e-07   0.00017     116     187 ..     981    1059 ..     957    1125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2e-07
                     HHHHHHHHHHHH.CC.-S.....EEEEEE-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHTTS-T..TTEEEEEE-SSB- CS
                     xxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
  Metalloenzyme  116 avevaekaldailsgkfd.....lvvvniknaDmvGHtgdleatiaaieaaDeavkeildaieq..vdgilvvtADHgn 187 
                       e+a+ al+a+++++ +     ++++     D +GH +d++a+++ + ++D+a + +ld i++  ++++lv t+DH +
     CCE27560.1  981 LSEMAKTALKALEKSTAKsdrgfFLMIEGSRIDHAGHINDPAAQVREVLEYDKAFAAVLDFIDSsaTETVLVATSDHET 1059
                     45678888888877654455888999999*********************************86225789999****76 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   3.3e-07   0.00028      40     160 ..     103     225 ..      78     237 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.3e-07
                    TTTS-TTHHHHHHH..HHHHHHHHTHHHHTET...TCEEEEEEETHHHHHHHHHHHHHHHTT---....EEEEEEESE-SSTSSTTSHHHHHCHHT CS
  Abhydrolase_3  40 APehpfPaavedal..aalrwlaeqawelgad...psrivlaGdSaGGnlaaavalrardegepk....vagqvliyPvtdlertesesikkaeel 126
                        ++     da+  +al  l+e+  e   d   ++ ivl G S G  laa++a+   d++  +    ++++v i+P   +  +  e++   ++l
     CCE27560.1 103 GGRSRYTNTSWDAYttDALANLFETVIEEYRDaelNQGIVLIGHSMGTALAAQLARHTEDHE-TSiakhIVAIVAICPTAGP--P-DEQQ---SAL 191
                    55555555555555335778888887544433223668*****************9999985.33468899*******7744..3.3333...345 PP

                    TTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGC CS
  Abhydrolase_3 127 adgplltraaldlfwrlylpeadrddplasplla 160
                     ++ l+ + ++  +wr++ +   +d+p +s  ++
     CCE27560.1 192 LRRLLWIPGWMFGLWRAWDGMGGLDSPSVSRFVG 225
                    5678999999999999999888999998887766 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   8.4e-07   0.00072       3      96 ..      69     170 ..      67     190 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8.4e-07
                   EEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST........SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHC. CS
  Thioesterase   3 LflfppagGsasvfrslasklsdpvvevlavqlpgre........rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesq. 90 
                   L+  p+ gGs+++f+ l  +l d ++  l +  pg +         d  + + ++ l + ++e+ r        +l+GhS+G +lA ++Ar+ e+  
    CCE27560.1  69 LVFIPGLGGSVAQFYPLLNSLVD-LAPCLSIDFPGGGrsrytntsWDAYTTDALANLFETVIEEYRDAELNQGIVLIGHSMGTALAAQLARHTEDHe 164
                   677899999**************.7*********999444432222223333445677788888888888899******************998875 PP

                   T-SEEE CS
  Thioesterase  91 Glavks 96 
                    +  k+
    CCE27560.1 165 TSIAKH 170
                   444444 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.1e-06   0.00091     149     192 ..     540     593 ..     517     610 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.1e-06
                    GSCCHHHHHHHHHHHHHH..........STTSS-EEEECSSSSHHHHHHHHHHH CS
  Y_phosphatase 149 pesaksllklirkveksk..........eaksgpvvVhCsaGvgRtgtfvaldi 192
                    p++ +s+++l+++v+k++           a++  + VhC  G +Rtg f++  +
     CCE27560.1 540 PHEVQSFIRLVDQVRKNQderartegwtVAEKRVIGVHCHYGFNRTGYFIVCYL 593
                    467889999999999999*********766777788*************98654 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.41   3.5e+02       8      20 ..      70      82 ..      67      91 .. 0.86
   2 !   16.0   0.0   8.6e-06    0.0074      73     133 ..     122     184 ..     111     194 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.41
       PGAP1  8 lFvpGnagsykqv 20
                +F+pG++gs+ q 
  CCE27560.1 70 VFIPGLGGSVAQF 82
                8*********996 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 8.6e-06
       PGAP1  73 ndaIkyIlslysssekeptsviliGHSmGGivaraaltlkn....yikqsvntiltlasPhalpp 133
                  ++ +++++ y    + ++ ++liGHSmG  +a  ++ + +     i++++  i+ +  P a pp
  CCE27560.1 122 ANLFETVIEEY-RDAELNQGIVLIGHSMGTALAAQLARHTEdhetSIAKHIVAIVAI-CPTAGPP 184
                 45555666667.67788999*********9987666655552222444455444443.5666666 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.9e-06    0.0016      85     153 ..     510     593 ..     479     596 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.9e-06
                      ...EE-HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS-T...............T-EEEEE-SSSSHHHHHHHHHHH CS
  PTPlike_phytase  85 tpeevyerelaeelslrYaRipitdekapeeedfdalvsilkeape...............ktalvfnCqmGrgRTTtamviat 153
                      + + vy+    e+ + +Y+ +p   +  pe+ +++++++++ ++ +               k ++ ++C+ G  RT +++v++ 
       CCE27560.1 510 KDQPVYDPRGLERGGTHYHKFPTVSKIPPEPHEVQSFIRLVDQVRKnqderartegwtvaeKRVIGVHCHYGFNRTGYFIVCYL 593
                      5666777777788899****************************5559************999999***************986 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0055       4.7      75     124 ..     118     165 ..     105     174 .. 0.73
   2 !    8.2   0.0     0.002       1.7     139     172 ..     273     306 ..     267     319 .. 0.88
   3 ?   -0.9   0.0       1.1   9.7e+02     138     163 ..     947     972 ..     932     987 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0055
         DLH  75 eekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaevpevda 124
                 ++++ + ++  ++ ++  +   ++ ++++G  mG ala +la++ +  + 
  CCE27560.1 118 TDALANLFETVIEEYRDAE--LNQGIVLIGHSMGTALAAQLARHTEDHET 165
                 4455555555555555555..889*******************9965555 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.002
         DLH 139 eaakikapilalfgeeDefipadevekleealka 172
                 + a ikapil ++ge D+  p  ev+k+  al+ 
  CCE27560.1 273 AWASIKAPILLIAGEDDHLTPPTEVQKIMDALEG 306
                 5678************************999865 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.1
         DLH 138 eeaakikapilalfgeeDefipadev 163
                 +  +k++ p+l+lf++ D +++ d +
  CCE27560.1 947 DGGDKVQLPLLGLFATTDVPFELDRR 972
                 556899*************9998853 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.3e-05     0.011      72     120 ..     125     180 ..      67     194 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
  LIDHydrolase  72 lkellek.aksekdvklilvGHSvGaYialevlkrlsers......ikkvvlLfPt 120
                   +++++e+ +++e ++ ++l+GHS G+ +a +++++ ++++      i  +v ++Pt
    CCE27560.1 125 FETVIEEyRDAELNQGIVLIGHSMGTALAAQLARHTEDHEtsiakhIVAIVAICPT 180
                   344444455678899*******************999988999999*********9 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.6e-05     0.031      44      93 ..     117     167 ..      87     185 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.6e-05
                 HS-HHHHHHHHHHHHHHHTT....-EEEEEEEETHHHHHHHHHHHHHHHTT-SS CS
    Lipase_3  44 eeslreqvlkelkrllekyp....eysivvtGHSLGgalAlLaaldlvengene 93 
                 +    +++ + +++++e+y+    +  iv+ GHS+G alA+ +a +   ++ + 
  CCE27560.1 117 T---TDALANLFETVIEEYRdaelNQGIVLIGHSMGTALAAQLARHTEDHETSI 167
                 3...44455555667777775555788*************98888877777554 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   0.00011     0.091      25      93 ..     701     773 ..     689     793 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00011
                 ..........................XXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXX.XXX CS
        RskA  25 aaaaapppaaapaararr........laaaaAaalllvlgqlavasaaldplrqsaaqaeavvavlaapdaagatat 93 
                 a a + +p+a+p +++++        +++a Aa+++l+++    a+ ++++ r+  +++++ ++++ +++ ++a+++
  CCE27560.1 701 ASAGSSSPKARPSKWPKAreisifiwALVATAAVIILAVW----AQHNQQTSRDVSRDGKRNLVFMVSDGMGPASLS 773
                 2333334444444444445789997666666666666666....677777666666666666666555545555554 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00042      0.36     105     189 ..     142     306 ..     108     313 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
        FSH1 105 GiiGFSqGaalaallaslleellkeashpslkfailvsGfkleepk..................................................... 150
                  +iG S G+alaa la  +e ++++   +++  +++++  +  +p+                                                     
  CCE27560.1 142 VLIGHSMGTALAAQLARHTEDHETSI-AKHIVAIVAICPTAG-PPDeqqsallrrllwipgwmfglwrawdgmggldspsvsrfvgkeadrelrtmqyr 238
                 46899999999999999999988754.333333333332222.22224588888888888888888889999999999999999999999999999999 PP

        FSH1 151 ................................yeeyyeedkiqtptLhvlGelDtvvdeerseaLaeafkn 189
                                                  +      +i+ p+L + Ge+D + ++++ +++++a + 
  CCE27560.1 239 fnqqsrtpvwrrmaygalpmyiqgkpkgglvgLD---AWASIKAPILLIAGEDDHLTPPTEVQKIMDALEG 306
                 8888888888887777666655554443333222...34678**********************9998875 PP

>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.7e-05     0.074      72     115 ..     117     160 ..      97     181 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.7e-05
      DUF900  72 saeasrdalekllrylatkksakkihllaHSmGtwlvlealrql 115
                 ++ a ++ +e+++++ + ++ ++ i l+ HSmGt l+++  r+ 
  CCE27560.1 117 TTDALANLFETVIEEYRDAELNQGIVLIGHSMGTALAAQLARHT 160
                 344444555666666666688999***********998766654 PP

>> DUF3089  Protein of unknown function (DUF3089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.8e-05     0.084      93     131 ..     138     177 ..     122     191 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.8e-05
     DUF3089  93 grPiiLaGhsQGallllrLlkeeiagkp.lqkrLvaayli 131
                 +++i+L+Ghs G++l+ +L ++  +++  ++k++va  +i
  CCE27560.1 138 NQGIVLIGHSMGTALAAQLARHTEDHETsIAKHIVAIVAI 177
                 457******************99888888******98765 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017      0.14      69     135 ..     117     188 ..      54     196 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
  Chlorophyllase2  69 vlnWlakgLesvlpeevepdlsk.lalsgHSrGgktafalalgkaktsl....kfsaligvdPvagaskskq 135
                       ++ la+ +e+v++e   ++l++ ++l gHS G+  a++la ++++ ++    ++ a++++ P ag   ++q
       CCE27560.1 117 TTDALANLFETVIEEYRDAELNQgIVLIGHSMGTALAAQLARHTEDHETsiakHIVAIVAICPTAGPPDEQQ 188
                      56678888999999999999986599***************998885555577999*******999654444 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.47     4e+02      21      44 ..     138     161 ..     125     187 .. 0.78
   2 ?    9.2   0.0    0.0012         1     111     144 ..     274     306 ..     270     328 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.47
                 -SSEEEEEETHHHHHHHHHHHHSS CS
      BAAT_C  21 kdkigllGiSkGgelalllasflk 44 
                 +++i l+G+S G  la  la + +
  CCE27560.1 138 NQGIVLIGHSMGTALAAQLARHTE 161
                 4899**************997765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0012
                 GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHC CS
      BAAT_C 111 vekakgpillvvgedDknwpSkesaekaserLkk 144
                 +  +k+pill++gedD+++p  e+  k+++ L+ 
  CCE27560.1 274 WASIKAPILLIAGEDDHLTPPTEVQ-KIMDALEG 306
                 6789****************99887.66666665 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00024      0.21     110     159 ..     127     178 ..     107     191 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00024
        LCAT 110 elieealk.lsgkkvvliaHSmGnllvlyflkwveaea.Wvdqhikafislg 159
                 + iee  + + ++ +vli+HSmG  l     ++ e++   + +hi a++++ 
  CCE27560.1 127 TVIEEYRDaELNQGIVLIGHSMGTALAAQLARHTEDHEtSIAKHIVAIVAIC 178
                 45677777677899**********9999888877765447788888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.47
# Mc/sec: 8018.02
//
Query:       CCE27561.1  [L=844]
Description: related to SKT5 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-14   51.7  20.0      1e-06   29.2   0.1    7.0  7  Sel1      Sel1 repeat
     0.0039   16.9   0.4      0.048   13.5   0.0    3.0  3  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.067   13.3   0.1         15    6.0   0.0    3.4  2  TPR_2     Tetratricopeptide repeat
      0.096   12.8   0.6       0.28   11.3   0.1    2.0  2  TraI_2B   DNA relaxase TraI 2B/2B-like domain
       0.96    9.8   4.8        1.9    8.9   0.1    3.3  3  TPR_8     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.85     3e+03      14      38 .]     218     243 ..     207     243 .. 0.64
   2 ?    2.9   0.1     0.053   1.9e+02       2      32 ..     245     269 ..     244     275 .. 0.70
   3 !    9.3   0.1   0.00054       1.9       5      28 ..     280     302 ..     276     310 .. 0.87
   4 ?   -0.2   0.0      0.53   1.9e+03      23      37 ..     344     358 ..     317     359 .. 0.71
   5 !    7.1   0.4    0.0026       9.2       2      37 ..     361     395 ..     360     396 .. 0.76
   6 !   11.9   0.3   8.1e-05      0.29       2      34 ..     398     430 ..     397     430 .. 0.84
   7 !   29.2   0.1   2.8e-10     1e-06       4      38 .]     438     470 ..     435     470 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.85
        Sel1  14 lnGl.gvpkDpekAiewyekAAeqGd 38 
                 ++G+ g   +++ A+  y++A e+G+
  CCE27561.1 218 EFGKfGHRLNKRDAFLGYKRASELGN 243
                 55664455566666666999999997 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.053
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewyek 32 
                  + yr+G  +  l+ +    D++kA e+y k
  CCE27561.1 245 RSEYRMG--M--LFEQ--SNDISKAKEHYYK 269
                 6899999..6..3333..4688888888877 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00054
        Sel1   5 yrLGmfylylnGl.gvpkDpekAie 28 
                 yr+Gm+   l G+ g+pkD+ +++e
  CCE27561.1 280 YRMGMMS--LLGQhGEPKDYASGLE 302
                 9***888..****99****998875 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.53
        Sel1  23 pekAiewyekAAeqG 37 
                  + A  + ekAA +G
  CCE27561.1 344 LDMAKMYVEKAAYLG 358
                 566889999999998 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.0026
        Sel1   2 eAmyrLGmfylylnGl...gvpkDpekAiewyekAAeqG 37 
                  A+ ++G  +   + l   g + +p+  +++y +AA+qG
  CCE27561.1 361 KAQLKMG--Q--AHELcqlGCEFNPSYSLHYYGLAAKQG 395
                 6888888..7..444433566669**************9 PP

  == domain 6  score: 11.9 bits;  conditional E-value: 8.1e-05
        Sel1   2 eAmyrLGmfylylnGl.gvpk.DpekAiewyekAA 34 
                 eA+  +    ++l+G  gv k ++e+A+++ + AA
  CCE27561.1 398 EAALGVS--RWFLFGYeGVFKkNEELAFKYAQEAA 430
                 5555555..888****998888************9 PP

  == domain 7  score: 29.2 bits;  conditional E-value: 2.8e-10
        Sel1   4 myrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                  +++G  y+y+ G  v +++ +A++wy++AA++G+
  CCE27561.1 438 EFAMG--YYYEIGIHVNQNIPEAHKWYQRAADHGN 470
                 789**..999************************7 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.3e-05     0.048       1      31 [.     244     274 ..     244     277 .. 0.92
   2 ?   -1.1   0.0      0.55     2e+03       2       9 ..     277     284 ..     276     285 .. 0.84
   3 ?   -1.5   0.0      0.75   2.7e+03      16      27 ..     454     465 ..     452     468 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALeln 31 
                 a++ y++G+++ + ++  +A e+y k  +ln
  CCE27561.1 244 ARSEYRMGMLFEQSNDISKAKEHYYKGMSLN 274
                 6778**********************98888 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.55
                 HHHHHHHH CS
       TPR_1   2 kalynlGn 9  
                  a+y++G+
  CCE27561.1 277 AAWYRMGM 284
                 69*****7 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.75
                 -HHHHHHHHHHH CS
       TPR_1  16 kydeAleyyekA 27 
                 +  eA + y++A
  CCE27561.1 454 NIPEAHKWYQRA 465
                 67899999**99 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.004        15       5      24 ..     248     267 ..     244     277 .. 0.85
   2 ?    3.3   0.0      0.03   1.1e+02      15      29 ..     453     467 ..     451     472 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.004
       TPR_2   5 ynlGlayyklgdyeeAleaf 24 
                 y++G++ ++++d  +A+e++
  CCE27561.1 248 YRMGMLFEQSNDISKAKEHY 267
                 99*****************9 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.03
       TPR_2  15 gdyeeAleafekAle 29 
                 ++  eA++++++A  
  CCE27561.1 453 QNIPEAHKWYQRAAD 467
                 6889*********76 PP

>> TraI_2B  DNA relaxase TraI 2B/2B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   7.7e-05      0.28      11      36 ..     243     268 ..     238     294 .. 0.91
   2 ?   -2.8   0.0       1.9   6.9e+03      29      44 ..     488     503 ..     483     507 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.7e-05
     TraI_2B  11 klrdtYreGmVlEdrsekketreryv 36 
                 ++r+ Yr Gm +E+ ++ ++ +e+y 
  CCE27561.1 243 NARSEYRMGMLFEQSNDISKAKEHYY 268
                 57899*******************95 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.9
     TraI_2B  29 ketreryvidrvhadt 44 
                 k+ +e+ +++r++ ++
  CCE27561.1 488 KQDHETMTLTRIKSQH 503
                 5778999999999887 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00052       1.9       5      31 ..     248     274 ..     244     276 .. 0.92
   2 ?   -1.2   0.1      0.89   3.2e+03      17      29 ..     344     356 ..     343     370 .. 0.82
   3 ?    1.1   0.1      0.17   5.9e+02       3      27 ..     405     429 ..     403     430 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00052
                 HHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleld 31 
                 y++g++ ++ +d+ +Ake y k  +l+
  CCE27561.1 248 YRMGMLFEQSNDISKAKEHYYKGMSLN 274
                 899*******************99997 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.89
                 HHHHHHHHHHHHH CS
       TPR_8  17 yeeAkeyyekale 29 
                 +++Ak y eka +
  CCE27561.1 344 LDMAKMYVEKAAY 356
                 5789999999865 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyeka 27 
                  +++ g+    +++ e A +y ++a
  CCE27561.1 405 RWFLFGYEGVFKKNEELAFKYAQEA 429
                 699999999************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5834.30
//
Query:       CCE27562.1  [L=273]
Description: related to RPN12-26S proteasome regulatory subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-18   67.3   0.0    1.9e-18   66.8   0.0    1.2  1  CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
  ------ inclusion threshold ------
       0.16   11.3   0.0       0.22   10.9   0.0    1.3  1  SAC3_GANP        SAC3/GANP family


Domain annotation for each model (and alignments):
>> CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   2.1e-22   1.9e-18       5     134 ..     102     239 ..      98     249 .. 0.89

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 2.1e-22
  CSN8_PSD8_EIF3K   5 elytniLlkaLtqndladfrlllkrlpaaiqqs.......deeiqklltLetlLeeanyakfwstlksddls.adltadvagleelvReeiakl 90 
                      +++++ Ll++Ltq + a+f+++l+ l++            d ++ + ++Le+ L+e++y ++w ++ks + + +++  + + l++++R eia++
       CCE27562.1 102 KVTGLSLLLLLTQGRYAEFHTELESLANRDGCGnagdvegDRYLGYPIRLERWLMEGSYDRVWRAMKSSEVPcDEYGVFSEILKNQIRSEIASS 195
                      78999*******************9998776667999999**************************998765279******************* PP

  CSN8_PSD8_EIF3K  91 vgkaYesIsadvlaelLglssdeelekfvkevgWeldaatvivp 134
                       ++aY+s+ +   ++lL l+s+ ++ +f+k +gW + +    +p
       CCE27562.1 196 SERAYSSLPIGSTKSLLFLESEGDVIQFAKHRGWGVRDGYIYFP 239
                      ********************999***********9955444455 PP

>> SAC3_GANP  SAC3/GANP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.5e-05      0.22     198     291 ..     139     231 ..      65     233 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.5e-05
                 HHTSHHHHHHHHHHHHH--TTHHHHHHHHT..TS-HHHHHHHGGGH.HHHHHHHHHHHHHHS-TT---EEHHHHHHHTT-SSHHHHHHHHHHTT--E CS
   SAC3_GANP 198 ilkspevqlalklvaalqennyvrffklvk..evsylqacllerhf.nevRrkalkalsraykskskkvpleeLaelLlfddeeeaeefceayglev 291
                 +  ++ + + ++l + l+e+ y r+++ +k  ev+  +  +++  + n++R+++ ++  ray    +++p+ + ++lL++++e ++++f ++ g  v
  CCE27562.1 139 VEGDRYLGYPIRLERWLMEGSYDRVWRAMKssEVPCDEYGVFSEILkNQIRSEIASSSERAY----SSLPIGSTKSLLFLESEGDVIQFAKHRGWGV 231
                 455556667788899999999********99999999887776665379*************....79************************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2183.55
//
Query:       CCE27563.1  [L=1083]
Description: probable COP1-coatomer complex alpha chain of secretory pathway vesicles [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.4e-146  486.9   0.0   8.7e-146  486.5   0.0    1.2  1  Coatomer_WDAD  Coatomer WD associated region
    8.9e-99  331.0   0.0    1.3e-98  330.5   0.0    1.1  1  COPI_C         Coatomer (COPI) alpha subunit C-terminus
      3e-18   65.8   4.8    5.2e-05   23.9   0.6    4.6  4  WD40           WD domain, G-beta repeat
      3e-05   24.2   0.4     0.0011   19.3   0.0    3.5  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
  ------ inclusion threshold ------
      0.022   13.4   0.1        4.6    5.8   0.0    2.4  2  Nup160         Nucleoporin Nup120/160
       0.11   12.3   0.0       0.36   10.6   0.0    1.8  2  IPPT           IPP transferase


Domain annotation for each model (and alignments):
>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  486.5   0.0  2.9e-149  8.7e-146       1     444 [.     213     642 ..     213     643 .. 0.99

  Alignments for each domain:
  == domain 1  score: 486.5 bits;  conditional E-value: 2.9e-149
                    XXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD   1 esevrqanikkkeelkdgellslqlkelgsieiypqslshnpngrfvlV...cgdgeyiiyt.......alalrnkaygkgldfvwvssnrfavle 86 
                    e+++++++++++    ++++  l+lk+lgs +++p++ls+np++r+vlV    + g+y+++t       a++ +++++g+g+++v+v++nrfavl+
     CCE27563.1 213 EKQIKSYDFQQN----VESPTLLSLKKLGSPWVTPRTLSYNPAERSVLVttpSDGGSYELVTlpkdgsgAVESTESKRGSGNSAVFVARNRFAVLN 304
                    589*********....9**********************************99******************************************* PP

                    X.XXXXXX.XXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX... CS
  Coatomer_WDAD  87 s.sksvkifknfkekktksikleyqvdkifg...GalLgvksegsvsfYDweqgklvrridvkkvknVvwsddgelvalvskdtvyilsynleave 178
                      ++++ i k+++++ t+s+k++  +++i+    G+lL+++++  v++YD++q+k  +++ v+ vk+Vvws dg ++al+sk++v+i+++ le   
     CCE27563.1 305 VsTQTIDI-KDLSNNITRSFKPPAGTSDIYFggtGNLLIITPSA-VHLYDIQQKKSTAELAVSGVKYVVWSVDGLYAALLSKHNVTIITKALE--- 395
                    989*****.********************999************.************************************************... PP

                    ..........XXXXXXX.XXXXXXXXXXXX.XXXXXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 179 eedeeegvedafevlhelsesiksgaWvgd.vfiYttsnnrlky.lvngevgiikhldktlyilgykgkenklylldkdgnvvsleidlselefkt 272
                              ++++lhe +++iks++W++  v++Y+t n ++ky l+ng++gi+++ld+t+y++++kg  +++y+ld+ ++ ++l+id++e++fk+
     CCE27563.1 396 ----------QVSTLHE-TIRIKSATWDDAgVLLYSTLN-HVKYtLLNGDNGIVRTLDQTVYLVRVKG--RNVYCLDRAAKPRILQIDPTEYRFKL 477
                    ..........*******.*********************.****************************..************************** PP

                    XXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXX-GGGSS-HHHHHHHHHHTT-HHHHHHHHHHH--HHHHHHHHHHHHHTT-HHHH CS
  Coatomer_WDAD 273 avlrkdleevlkiiaasnllpeipkeegqkiirfLekkgypelAlqlvqDpetkFdLAlelgnLelAlelakelddeekWkkLgdaAlsqgnikla 368
                    a++++++ee+l+ii++s+l+       gq+ii++L+kkgype+Alq+vqDp t+FdLA+e+gn+++A+e+ak+ld++  W +L+ +Al++gn++++
     CCE27563.1 478 ALVKRNYEEMLHIIRTSSLV-------GQSIISYLQKKGYPEIALQFVQDPTTRFDLAIECGNIDVAVEMAKQLDKPVFWGRLSSEALAHGNHQIV 566
                    ********************.......********************************************************************* PP

                    HHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT CS
  Coatomer_WDAD 369 eeayqkakdfdkLllLylstgnkekLkkLakiaekkgdyniafqaalllgdvekcvdlLiksgrlpeAalfAktyg 444
                    e++yqk k+fdkL++Lyl+tg+++kL+++akiae++gd++++f++al+lg+ve++++l+++ + +p+A+++Ak++g
     CCE27563.1 567 EMCYQKLKQFDKLSFLYLATGDHSKLARMAKIAEHRGDFSSRFHNALYLGEVEDRIQLFKEIDLYPLAYMTAKSHG 642
                    **************************************************************************98 PP

>> COPI_C  Coatomer (COPI) alpha subunit C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.5   0.0  4.2e-102   1.3e-98       3     397 ..     693    1081 ..     691    1083 .] 0.89

  Alignments for each domain:
  == domain 1  score: 330.5 bits;  conditional E-value: 4.2e-102
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---HHH CS
      COPI_C    3 ffegalaakakasaaaveeeeeeeagagWgddedldleekkeeeededeeeeedeeeggWdvedlelpadldaeaaasaaaesevfvaPtkgvpvsq 99  
                  +fe al  + ++    +e+e+ ++++ + g d + +le       + + +e++de+ +gWd+ d ++p  +d++  +      ++  a  +g++++ 
  CCE27563.1  693 IFEQALLGQVEGL--SLEDESAAATNRDEGVDGKSNLER------HGNLAEDDDEDAAGWDLGDDDVP-GIDSGFVNV-----DIAEAGGAGTSEAD 775 
                  5666666666554..444555555555555555444444......3333345677899****998998.444444444.....45678899****** PP

                  HHHHH---HHHHHHHT-HHHHHHHHHHHS-----GGGHHHHHHHHHHS-EEE-SSTTS--EEE--BTTTTT--SSS--B-----HHHHHH.HHHHHH CS
      COPI_C  100 iWvnksqlaadhvaaGsFetAmrLLnrqvGvvnfaplkslFlelyaasrtslealpslpsllvalernwkeaaaknglPalvlklsqlee.rLkaaY 195 
                  +W+++s la+dhva GsFe+Am+LLnrq Gvvnf+plk+ F+e+y++ r+ l+a + lp l+ +++r+++e  +++ lP +  +l++l++  L+++Y
  CCE27563.1  776 QWARNSPLAVDHVAGGSFESAMQLLNRQAGVVNFTPLKPRFMEVYQSCRSFLPASSGLPALVNHVRRTVDEPDPRQVLPIVCRDLEHLVTnDLQKGY 872 
                  ****************************************************************************************9879***** PP

                  HHHHHT-HHHHHHHHHHHHHHGGG----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SS.....HHH..HHHHHHHHHHHHS---HHHHHHHHH CS
      COPI_C  196 klttegkfseavekfrsillsipllvvdskqevdevkeLieicreYivgLrmEikRkelkks.....ddq..krqaElaAYfthcnlqpvHliLaLr 285 
                    + + k+++ ++ f+sil++i++  v+s  ev+e+++Li+ + eY++++ +E++R++l +      d +  kr+ El+AYft  +++  H++LaL 
  CCE27563.1  873 DSMKANKLEDGIRIFKSILHAILINAVSSEAEVAEARKLITSASEYTIAMDIELARRRLGAPdavaqDSAklKRSLELSAYFTIPKIEVPHRQLALL 969 
                  *********************************************************9975455665333569************************ PP

                  HHHHHHHHHTBHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHS--BSS--S--SSS---BBTTT--B--TTS--EE-TTT--EE-GGGTTSB-TT CS
      COPI_C  286 sAlnlffKlknfktaasfarrLLelgpkeevaqqarkvlqaceknptdevelnYdernPFvvcaatfvPiYrgkkevkcplcgasyvpelkgkvckv 382 
                  sA++l+ K kn+++a sfa+r++  g ++++ ++a+k+ + ce+np+d++++++d+   F++caa+ +PiY g++ ++c++ g++y+ ++kg+vc+v
  CCE27563.1  970 SAMQLAVKNKNYNSALSFANRIIANGGSTKIMDNAKKMKAQCERNPNDSIDIEFDQFAEFDICAASHTPIYSGSPYEECSFDGSKYHSKYKGTVCRV 1066
                  ************************************************************************************************* PP

                  TSSSBSS-------- CS
      COPI_C  383 cevaeiGkdaiGLri 397 
                  cev+eiGk  +GL++
  CCE27563.1 1067 CEVCEIGKHGSGLKL 1081
                  *************86 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.3e-07    0.0022       8      38 .]       2      33 ..       1      33 [. 0.90
   2 !   21.2   0.0   1.3e-07   0.00039       6      37 ..      74     106 ..      70     107 .. 0.90
   3 !   23.9   0.6   1.7e-08   5.2e-05       4      38 .]     116     151 ..     113     151 .. 0.87
   4 ?   -0.8   0.0       1.1   3.3e+03      23      37 ..     178     191 ..     167     192 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.3e-07
                ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  8 tGHss.vtslafspdgawlasGsdDgtvriWd 38
                tGH++   + +f+p  ++++s+s D++vr+Wd
  CCE27563.1  2 TGHNHyAMCAQFHPKEDLVVSASLDQSVRVWD 33
                79977666888********************9 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 1.3e-07
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +l+GH  +v+ +af+p  ++++s++dD+ +++W
  CCE27563.1  74 VLEGHdRGVNWVAFHPTMPLIVSAGDDRLIKLW 106
                 689**666************************* PP

  == domain 3  score: 23.9 bits;  conditional E-value: 1.7e-08
                 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 + t++GH++  +++ f+p++++++s+++D+t+r+Wd
  CCE27563.1 116 VDTCRGHFHnASGCLFHPHQDLILSAGEDKTIRVWD 151
                 67899**44578888********************9 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.1
                 SEEEEEETTSEEEEE CS
        WD40  23 awlasGsdDgtvriW 37 
                 +++a+G+ D+ v+++
  CCE27563.1 178 NLFAAGH-DNGVMVF 191
                 5689999.9888876 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.84   2.5e+03       2      22 ..      12      32 ..      10      46 .. 0.74
   2 !   19.3   0.0   3.6e-07    0.0011       2      81 ..      86     166 ..      85     196 .. 0.91
   3 ?   -2.2   0.0       1.8   5.5e+03      62      87 ..     348     370 ..     332     411 .. 0.60
   4 ?   -0.7   0.1      0.62   1.8e+03      36      70 ..     401     435 ..     371     458 .. 0.66
   5 ?   -1.6   0.0       1.2   3.4e+03      14      33 ..     439     458 ..     436     468 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.84
  ANAPC4_WD40  2 swcptmDLiAlatedgellvf 22
                 ++ p+ DL+  a+ d++++v 
   CCE27563.1 12 QFHPKEDLVVSASLDQSVRVW 32
                 566788888888877777764 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 3.6e-07
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRlngqrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++ ptm Li  a +d  + + R++  + w++ +  ++ ++ ++  ++p   l+  a +d ++r+ d ++ + v+s++ +++
   CCE27563.1  86 AFHPTMPLIVSAGDDRLIKLWRMSETKAWEVdTCRGHFHNASGCLFHPHQDLILSAGEDKTIRVWDLNKRTAVQSFKREND 166
                  689****************************44456678999**********************************98877 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.8
  ANAPC4_WD40  62 vrlldaesgkvvhslsvksekavtcl 87 
                  v+l+d++++k   +l v+    v+ +
   CCE27563.1 348 VHLYDIQQKKSTAELAVSG---VKYV 370
                  5555555555444443332...2222 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.62
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  +e  +++s  W   g lL    +  +  ll+  +g
   CCE27563.1 401 HETIRIKSATWDDAGVLLYSTLNHVKYTLLNGDNG 435
                  66667777777777777777777666666666555 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 1.2
  ANAPC4_WD40  14 tedgellvfRlngqrvwtle 33 
                  t d+ +++ R++g++v+ l+
   CCE27563.1 439 TLDQTVYLVRVKGRNVYCLD 458
                  66899***********9884 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0015       4.6     228     251 ..      13      38 ..       4      82 .. 0.81
   2 ?    5.1   0.0    0.0025       7.5     228     255 ..     132     160 ..      89     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0015
                 ...TTTEEEEEETT-EEEEEETTTTE CS
      Nup160 228 i..gqtylfalsrdgkLrvWnlltgk 251
                    ++++++++s+d+ +rvW+++ ++
  CCE27563.1  13 FhpKEDLVVSASLDQSVRVWDISGLR 38 
                 334899***************98765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0025
                 ..TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 228 i.gqtylfalsrdgkLrvWnlltgkclat 255
                   +q++++++  d+++rvW+l+  + + +
  CCE27563.1 132 HpHQDLILSAGEDKTIRVWDLNKRTAVQS 160
                 4599*****************98877766 PP

>> IPPT  IPP transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.7   5.2e+03     105     138 ..     371     404 ..     348     458 .. 0.73
   2 ?   10.6   0.0   0.00012      0.36      97     178 ..     565     652 ..     535     674 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.7
                 HHHC-HHHHTTS-TT-HHHHHHHHHHHHHHSS-H CS
        IPPT 105 lkevdpeaaakihpndrqRiiRalevyeetgkpl 138
                 + +vd  +aa +++++   i++ale + +  +++
  CCE27563.1 371 VWSVDGLYAALLSKHNVTIITKALEQVSTLHETI 404
                 5567888888899999999999998865544444 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHC-HHHHTTS-TT-HHHHHHHHHHHHHHSS-HH...ECEEEEEECSHHHHHHHHHHHHHHHHHT...THHHHHHHHHH CS
        IPPT  97 glealheelkevdpeaaakihpndrqRiiRalevyeetgkpls...ellviglesdreelyeridkRvdemlea...GlleEveklla 178
                   e ++++lk+ d+ +   +   d+ ++ R  ++ e+ g   s   ++l++g  +dr +l ++id +  + + a   Gl +E + +l+
  CCE27563.1 565 IVEMCYQKLKQFDKLSFLYLATGDHSKLARMAKIAEHRGDFSSrfhNALYLGEVEDRIQLFKEIDLYPLAYMTAkshGLDDECQVILE 652
                 35669*****************************999998555554678888878**********99766664435578888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1083 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 7097.87
//
Query:       CCE27564.1  [L=1477]
Description: related to KRE5-killer toxin-resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-148  492.2   2.4   5.9e-148  491.5   2.4    1.3  1  Glyco_transf_24  Glucosyltransferase 24
    2.3e-62  211.3   0.1    5.9e-62  209.9   0.0    1.8  2  Thioredoxin_14   Thioredoxin-like domain
    4.3e-47  160.8   0.1    3.5e-46  157.8   0.1    2.3  2  Thioredoxin_15   Thioredoxin-like domain
    2.3e-42  145.1   0.2    1.6e-41  142.3   0.0    2.2  2  Thioredoxin_12   Thioredoxin-like domain
    1.5e-39  135.0   0.7    1.7e-38  131.6   0.1    2.8  3  Thioredoxin_13   Thioredoxin-like domain
    5.1e-38  129.5   0.0    1.1e-37  128.5   0.0    1.6  1  UDP-g_GGTase     UDP-glucose:Glycoprotein Glucosyltransferase
    7.3e-06   25.7   0.1    1.6e-05   24.6   0.1    1.5  1  Glyco_transf_8   Glycosyl transferase family 8
  ------ inclusion threshold ------
      0.047   13.4   0.1       0.13   11.9   0.0    1.7  2  DUF4255          Protein of unknown function (DUF4255)


Domain annotation for each model (and alignments):
>> Glyco_transf_24  Glucosyltransferase 24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  491.5   2.4  2.6e-151  5.9e-148       1     266 [.    1166    1431 ..    1166    1433 .. 0.99

  Alignments for each domain:
  == domain 1  score: 491.5 bits;  conditional E-value: 2.6e-151
  Glyco_transf_24    1 inifsvasGklyerllkimilsvlkktkksvkfwlienflspkfkellpklakkygfeyelvtykwPkwlrkqkekqriiwgykilfldvlf 92  
                       inifsvasG+lyer+l+imilsv+++tk++vkfw+ie+flsp+fk+++p+la++y f+ye+vtykwP+wlr+qkekqr iwgykilfldvlf
       CCE27564.1 1166 INIFSVASGHLYERMLSIMILSVMRNTKHTVKFWFIEQFLSPSFKQFIPHLAEAYRFTYEMVTYKWPHWLRQQKEKQREIWGYKILFLDVLF 1257
                       89****************************************************************************************** PP

  Glyco_transf_24   93 PldldkvifvdadqvvradlkelveldlegapygytPlcdsrkemegfrfwkqgywkehlkgkkyhisalyvvdlkrfrklaagdrlraqyq 184 
                       Pl+ldkvifvdadq+vr+d+++lv+ldl+gapyg+tP+cdsr emegfrfwkqgyw++ l+gk+yhisalyvvdl+rfr+laagdrlr+qy+
       CCE27564.1 1258 PLSLDKVIFVDADQIVRTDMMNLVNLDLHGAPYGFTPMCDSRVEMEGFRFWKQGYWANYLRGKPYHISALYVVDLRRFRELAAGDRLRQQYH 1349
                       ******************************************************************************************** PP

  Glyco_transf_24  185 klsadpnslanldqdlPnnlqeevpifslpqewlwcetwcsdeskkkaktidlcnnPltkepklerakrlieeweeldeevk 266 
                       +lsadp sl+nldqdlPn++q ++pi+slpqewlwcetwcsd+s+kka+tidlcnnPltkepkl+ra+r+++ew+++d+e++
       CCE27564.1 1350 ALSADPGSLSNLDQDLPNHMQFQIPIHSLPQEWLWCETWCSDDSLKKAHTIDLCNNPLTKEPKLDRARRQVPEWTTYDDEIA 1431
                       *******************************************************************************997 PP

>> Thioredoxin_14  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         4   8.9e+03     160     188 ..     288     314 ..     261     327 .. 0.65
   2 !  209.9   0.0   2.6e-65   5.9e-62       1     254 []     402     643 ..     402     643 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4
                     ........TTHHHHHHHHHHHHHTT--SS CS
  Thioredoxin_14 160 ileaeitseydealkasrefikrlglkea 188
                     ++  + ++ +de +k s++f k+    ++
      CCE27564.1 288 VQ--QSETPFDELVKLSQDFPKHVRYMSS 314
                     33..5556799999999999888755444 PP

  == domain 2  score: 209.9 bits;  conditional E-value: 2.6e-65
                     B---SGGGTTTS---S--SSS-SSSTTS---HHHHHS--SSS.----SS--EEEEEEEESS-HHHHHHHHTHHHHHHHTT-SEEEEEEEE-..SS CS
  Thioredoxin_14   1 fdirdrkeggdailwlNdLEkDkrYsrWpsslqellrplypgqlpsirkNlfnlVlvlDlsqredllelltllqsfiqrniPiRfGlVplvsses 95 
                     +d++dr e+g++ilw+N+LE+D++Y ++p++l++ll+++ypgq+p++r N+fn+V++ Dls++edl+++++ +  +++r+iPiRfG+Vpl   ++
      CCE27564.1 402 YDWTDRSENGQVILWFNNLERDDTYDSYPKTLSSLLQRTYPGQIPPVRLNVFNMVFAADLSNTEDLHFMSQ-VIGLVNRGIPIRFGFVPLQ--TT 493
                     7****************************************************************988765.99*****************..55 PP

                     HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH..HT-SSS--..HHHHHHHHHHH..SS----TT...........TTHHHHHHHHHHHHHTT--SS CS
  Thioredoxin_14  96 edskklaklfyylaenygakaalefltaleakakkskepdltkevvesafkea..ldealkseveeileaeitseydealkasrefikrlglkea 188
                     +d++++ak+ y l++nyg++++++++++l++k +       +++ + s+++ +  +++ l+ +++ ++      e+de+l+ s+++++rl+++++
      CCE27564.1 494 SDATSQAKAAYALVKNYGIETLISYIEQLSSKGGV-----FDESLLLSVTNGRpvFSDSLSMSADGET---RGMEVDEQLELSSKWVARLQADTL 580
                     5699************************8744444.....3355666666655665555555543322...344799****************** PP

                     S-EEEE.TTEEEESSSSHHHHHHHHHHHHHHHHHHHHHTT---SS--GGGGT..TTS-BSS--TTT CS
  Thioredoxin_14 189 qepvfllNGvvlpfdekweqallaelqedlqelqkavyegiltddddvkdllldlegalkrrnpli 254
                      +p+f+ NGv++p+d++w+++++  + +dlq++q+ +y g+l+dd+ +  l+  l++a +rrn +i
      CCE27564.1 581 VRPLFV-NGVLVPRDQNWMRSISIIIGDDLQTVQQGIYLGTLDDDSPINGLF--LSEARPRRNTYI 643
                     ******.*********************************************..**********98 PP

>> Thioredoxin_15  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.37   8.2e+02      31     157 ..     455     591 ..     441     596 .. 0.71
   2 !  157.8   0.1   1.6e-49   3.5e-46       1     213 []     655     851 ..     655     851 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.37
                     EEEEE-TTSHHHHHHHHHHHHHHHH-TTEEEEEEE--S--SS-THHHHHHHHHTGGGGCT-SSHHHHHHHHH......................- CS
  Thioredoxin_15  31 lwvvaDldseeGrkLLleAlkflksspgvRlgiihnpssdseasslissalsaalkklknlealefleklleeet..........eellvsgmdk 115
                     ++ +aDl   e ++++++ +  + +   +R g++   ++++ +s++  +a++a++k+ + ++  + +e+l ++                     +
      CCE27564.1 455 MVFAADLSNTEDLHFMSQVIGLVNRGIPIRFGFVPLQTTSDATSQA--KAAYALVKNYGIETLISYIEQLSSKGGvfdeslllsvT------NGR 541
                     5667888888888888888888888888999999888888776666..89998999999999999999988855588885555552......333 PP

                     ------HH..............HHHHHHHHHHHTT--TT-EEEEETTEEE CS
  Thioredoxin_15 116 dafekeln........aeeakdylkalqkflrvlglepgqnavilNGRvv 157
                       f+++l+          e++++l+  +k ++ l+ +   + + +NG +v
      CCE27564.1 542 PVFSDSLSmsadgetrGMEVDEQLELSSKWVARLQADTLVRPLFVNGVLV 591
                     33333333333333445667778888888888888888888888888776 PP

  == domain 2  score: 157.8 bits;  conditional E-value: 1.6e-49
                     -HHHHHHHTHHHHTSS-EE---..S-TTT-EEEEEEE-TTSHHHHHHHHHHHHHHHH-TTEEEEEEE--S--SS-THHHHHHHHHTGGGGCT-SS CS
  Thioredoxin_15   1 dlsklysehaslfeklpyless..sdklkpvtlwvvaDldseeGrkLLleAlkflksspgvRlgiihnpssdseasslissalsaalkklknlea 93 
                     ++ k+y++++++fe+lp+l+++  ++k++++ ++v a++ s +G++L l+Al f +s+p vR++ii+   + s +s++  sal+++ + l nl++
      CCE27564.1 655 NVGKIYADNKEFFETLPVLNANeyATKEDWAAMTVLANMSSTAGLDLTLSALTFKRSNPAVRIDIINTHGDLSVSSQV-ISALKSKENGLLNLRS 748
                     5789***************6665588**********************************************996666.889999********** PP

                     HHHHHHHHH............-------HH......HHHHHHHHHHHTT--TT-EEEEETTEEEEEESSTTSS-HHHHHHHHHHHHHHTHHHHHH CS
  Thioredoxin_15  94 lefleklleeeteellvsgmdkdafekelnaeeakdylkalqkflrvlglepgqnavilNGRvvgpidedeefsaeDfelLesyerkkrikpvve 188
                      e+l++++                  +++n +++  y + l+++l +++l pg++++ lNGRv+gpi+ + +fs+eDf+ L+++er++ri pv++
      CCE27564.1 749 IEDLQSIVL-----------------EASNFDASGVYAQGLTNVLGDAKLMPGSQGIFLNGRVIGPIAPEFSFSSEDFQDLLAFERTQRILPVFA 826
                     *********.................567789999************************************************************ PP

                     HHHHHT-TTS--SHHHHHHHHHHHH CS
  Thioredoxin_15 189 aieelgleskisdsdlvakvtSlva 213
                     a e+lgl++ is++ ++ak++S+va
      CCE27564.1 827 AAEDLGLTDVISGPIAAAKLSSIVA 851
                     ***********************98 PP

>> Thioredoxin_12  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.3   0.0   7.2e-45   1.6e-41       2     187 ..      37     213 ..      36     217 .. 0.95
   2 ?   -0.1   0.1      0.32   7.2e+02     157     191 ..    1205    1241 ..    1203    1242 .. 0.87

  Alignments for each domain:
  == domain 1  score: 142.3 bits;  conditional E-value: 7.2e-45
                     --HHHHHHHHHSSS-HHHHHHHHHHH...HTTGGGS--SHHHHHHHHHHHHHH..S-.-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHTT...GG CS
  Thioredoxin_12   2 tPlllealEtlakenedlFwefvdaleelaeeesaesssdkelyeailklaes..ll.seealslfelsLalrsasPrieafyqlaeeslsslen 93 
                      P+lle++Et+a en +++++++d++   a+++++e+ssd++ly+++l ++++  ++ +++als+f+l+L+lrsa+Priea+yq+++++ + + +
      CCE27564.1  37 GPYLLELIETAAGENTSSYFPILDRV---ASGYFSEASSDSDLYDQFLGVLRNdgHIkDPDALSTFNLALSLRSAAPRIEAHYQYYRTAIEPFVE 128
                     59************************...79********************999*999***********************************88 PP

                     GSS-SSEEEETTEEESSTT.------B...--SS-STS--TT---BS....--SEEEEEEE--SSTTSHHHHHHHHHHHHHTSEEEEEEE---T CS
  Thioredoxin_12  94 ekkCkswvdvggelvcdveeleallkkekaassseqpellpfDhvypgskeasspvaILYgdlgskefkefhkkLkelakegkvkYvlRhvpps 187
                      ++C+ wv ++ +++c+++ l+ ++++   +  s   ++lpfD+ ++  +e     aIL++d++s++f+++h+kL+++a++  ++Y++R+  ++
      CCE27564.1 129 HRNCEVWVLFDRKQYCTPD-LDIVVRD---ELFSAIVKTLPFDRTIGIGRE-----AILFADPTSSKFAQYHQKLSKAARALALNYRIRYRRDN 213
                     888***************9.9*****9...88889999********75555.....**********************************8765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.32
                      SSTTSHHHHHHHHHHH..HHTSEEEEEEE---TTS-- CS
  Thioredoxin_12  157 gskefkefhkkLkela..kegkvkYvlRhvppsgses 191 
                       s++fk+f  +L+e+       v+Y + h++++++e+
      CCE27564.1 1205 LSPSFKQFIPHLAEAYrfTYEMVTYKWPHWLRQQKEK 1241
                      599************9886678*****9999998876 PP

>> Thioredoxin_13  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.1   7.7e-42   1.7e-38       4     133 ..     267     396 ..     262     399 .. 0.96
   2 ?   -0.2   0.0      0.38   8.4e+02      53     104 ..     560     611 ..     532     623 .. 0.66
   3 ?   -2.7   0.0       2.3   5.1e+03      70      84 ..     781     795 ..     772     797 .. 0.82

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 7.7e-42
                     -SS----SSGGTTHHHHHHHHHHHHSSHHHHHHHHHHTGGGGSTTCS-SSTTTTTTTTTHHHHHHS--TT--EEEETTEEE-GGG-SHHHHHHHH CS
  Thioredoxin_13   4 edlkpLkawelqdLglqaaqlImssedpLkaLsdlsqnFPkyassLarvkvseelreeieanqerlvqpgqnalwlNGvaldesdidpfsLldlL 98 
                      +lk+L++ el++ g++aa+++ +se+p++ L +lsq+FPk++++++++++s+++  e+e  ++r+v++g n lw+NG +l++++idpf+L+d+L
      CCE27564.1 267 MNLKTLSKTELRSVGMRAASYVQQSETPFDELVKLSQDFPKHVRYMSSQNISSAFAGEYERIKARMVRNGVNFLWMNGAQLTDRQIDPFTLVDVL 361
                     4577******************************************************************************************* PP

                     HHHHHHHHHHGGGS--HHHHHHHHT-HHHHHHHHH CS
  Thioredoxin_13  99 rkErkllnslkklglsseqaskllthpalakaksa 133
                     r+Er+l+n++++lg+++ +a++ll+h+a+++a+ +
      CCE27564.1 362 RRERSLVNGIRELGVNGADAIALLSHQAVSSAQGE 396
                     ******************************99876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.38
                     STTTTTTTTTHHHHHHS--TT--EEEETTEEE-GGG-SHHHHHHHHHHHHHH CS
  Thioredoxin_13  53 kvseelreeieanqerlvqpgqnalwlNGvaldesdidpfsLldlLrkErkl 104
                     +v+e+l+ + +   +   +     l++NGv ++ ++  + s+  ++  + ++
      CCE27564.1 560 EVDEQLELSSKWVARLQADTLVRPLFVNGVLVPRDQNWMRSISIIIGDDLQT 611
                     566666666655555557788899*********9996666666666555555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.3
                     --TT--EEEETTEEE CS
  Thioredoxin_13  70 vqpgqnalwlNGval 84 
                     + pg++ ++lNG+ +
      CCE27564.1 781 LMPGSQGIFLNGRVI 795
                     4599********876 PP

>> UDP-g_GGTase  UDP-glucose:Glycoprotein Glucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   0.0   4.8e-41   1.1e-37       1     109 []    1021    1129 ..    1021    1129 .. 0.96

  Alignments for each domain:
  == domain 1  score: 128.5 bits;  conditional E-value: 4.8e-41
                    EEE-EEESS----TT-EEEEE-SS-S-SEEEE--SGGGEEEEEE-SEEEEEEE-TTHHHHHEEEEE--SS-S--TT.----EEEE-STT-EEE-- CS
  UDP-g_GGTase    1 eGhardettkspprGlqleLgtekkksvaDTivmanlGYfQlkanPGvwklelregrssdiyeiesvgaeglsspk.degkevvltsfegktlyp 94  
                    eGh+r+ t  spprG+ql+L+te ++ ++DTi+manlG+fQ+kanPG+++++l++grs+d+y+ies+ga+g++ +  deg+e+vl++f+g t+yp
    CCE27564.1 1021 EGHSREGTG-SPPRGAQLVLATEAQPDITDTIIMANLGFFQFKANPGLYHIQLKDGRSRDLYSIESIGAHGWEPALgDEGTELVLMDFQGITVYP 1114
                    8****9877.9*************************************************************6666599**************** PP

                    EEEE-TT----TTS- CS
  UDP-g_GGTase   95 rvkrkpgkekedvle 109 
                    r+kr+ g+e++dvle
    CCE27564.1 1115 RLKRHLGMEEHDVLE 1129
                    ************996 PP

>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   7.3e-09   1.6e-05      10     226 ..    1177    1389 ..    1169    1402 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 7.3e-09
  Glyco_transf_8   10 YllgasvviksllknakepawfalnfhiltaeievenleklnklassykevlellesdkksledfesklklrspkylsllnylRlylpelfpk 102 
                      Y + +s++i s+++n+k+     ++f  +++ + +  ++ +  la+ y+  +e++  +   +    +++k+++ + + +  ++  +l+ l  +
      CCE27564.1 1177 YERMLSIMILSVMRNTKH----TVKFWFIEQFLSPSFKQFIPHLAEAYRFTYEMVTYKWPHWL---RQQKEKQREIWGYKILFLDVLFPL--S 1260
                      66778999*********5....899999999999999***********988777777666665...468889999999888888888777..* PP

  Glyco_transf_8  103 ldkilylDaDvvvqgdlseLwdldlkgkvlaaved...krfkkylnksepliaenfkpeacyFnaGvllfdldewrk....enitetlikwln 188 
                      ldk++++DaD +v +d+ +L +ldl g   ++      +   + + + ++   +n  + + y  + + ++dl + r+    + + ++++ + +
      CCE27564.1 1261 LDKVIFVDADQIVRTDMMNLVNLDLHGAPYGFTPMcdsRVEMEGFRFWKQGYWANYLRGKPYHISALYVVDLRRFRElaagDRLRQQYHALSA 1353
                      **************************9888876665443334444444445556666777777777777777777763333456666666644 PP

  Glyco_transf_8  189 lnekrtllklgdqdiln.ivfkgkvkeldkkynvlglgy 226 
                      + ++   l   dqd+ n + f+  +++l++++ +  ++ 
      CCE27564.1 1354 DPGS---LSNLDQDLPNhMQFQIPIHSLPQEWLWCETWC 1389
                      4444...67777776553557777777777777666665 PP

>> DUF4255  Protein of unknown function (DUF4255)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.8e-05      0.13      26     104 ..     398     476 ..     367     480 .. 0.83
   2 ?   -3.2   0.0       2.5   5.7e+03     147     160 ..    1317    1331 ..    1313    1336 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.8e-05
     DUF4255  26 dsPdkewaaslpeptlnlfLydieentalrnselpvrrdegttr..rnpplaldLhyLvtawgtsaedeeelrlLgralqa 104
                 +s+  +w+++ ++++++l+  ++e++ +  + +    +  ++t+  + pp++l+++ +v a   s+ +   l+++++++ +
  CCE27564.1 398 ESSRYDWTDRSENGQVILWFNNLERDDTYDSYPKTLSSLLQRTYpgQIPPVRLNVFNMVFAADLSNTE--DLHFMSQVIGL 476
                 5666799***9999**************777666666655666679***************9998774..7*****99976 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.5
     DUF4255  147 l.ggkyrpsllykvt 160 
                  l g++y +s+ly+v 
  CCE27564.1 1317 LrGKPYHISALYVVD 1331
                  5589********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 9726.60
//
Query:       CCE27565.1  [L=1012]
Description: probable white collar 1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-26   91.7   0.0      6e-18   65.0   0.1    3.5  3  PAS_9     PAS domain
    1.4e-20   73.3   0.0    1.6e-11   44.3   0.0    3.5  3  PAS_3     PAS fold
    1.9e-17   63.3   0.0    4.6e-06   26.6   0.0    3.9  3  PAS       PAS fold
    1.4e-10   41.3   0.0     0.0025   17.9   0.0    3.5  3  PAS_11    PAS domain
      3e-08   33.9   0.0      0.012   15.9   0.0    3.3  3  PAS_4     PAS fold
    0.00039   21.1   0.0       0.15   12.8   0.0    3.4  4  PAS_2     PAS fold


Domain annotation for each model (and alignments):
>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.1     2e-21     6e-18       5     103 ..     371     483 ..     367     484 .. 0.86
   2 !   11.5   0.0   8.9e-05      0.27      11      96 ..     572     656 ..     562     660 .. 0.75
   3 !   11.0   0.0   0.00013      0.38       9      73 ..     689     754 ..     683     769 .. 0.77

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 2e-21
       PAS_9   5 li...dnpdgrilyaNeaalrllGyspeevlgksitdlf.............vtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkd 87 
                 ++   + +d++i+y+++ + +l+Gys+ +++g++++ l+               d+ a  +l+ ++++gr  e ++ ++++rk g++f++llt++p+ +
  CCE27565.1 371 VVcdvTMNDCPIIYVSDNFQNLTGYSRHDIVGQNCRFLQspdgkveagskreFVDEGAVYNLKTMIQEGR--EVQQSLINYRKGGKPFLNLLTMIPIPW 467
                 4334466899******************************888888777777667777777777777777..*************************** PP

       PAS_9  88 ddgelvgiivilrDit 103
                 d +e++ +i++++D+ 
  CCE27565.1 468 DTEEIRYFIGFQIDLV 483
                 **************85 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 8.9e-05
       PAS_9  11 grilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk....kerevevvlirkngetfwvlltaspvkdddgelvgii 96 
                 g  ly +++ +r+l y+  +++g s++ ++     + +++  + +++++    ++ +    ++rk  ++ w++ + s + +++++ + ii
  CCE27565.1 572 GLFLYLSPSSKRVLEYDTVDLVGNSLSSVC-----HPSDIVPVTRELKDatagNQVNIVFRIRRKQSGYTWFESHGSLFVEQGKGRKCII 656
                 545799************************.....44444444444444444799999999999999***********987755444333 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00013
       PAS_9   9 pdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk...kerevevvlirkng 73 
                 ++g+ l+++  ++ ll  +pe +lg+si dl+   +e++ ++ + +eq r+     +  ev+++r  g
  CCE27565.1 689 TSGMFLFVSSNVRSLLDLQPESLLGTSIQDLM--RKESRPEFGRSIEQARRgkiVTCKHEVQNRRGQG 754
                 789999**************************..6666666666666555555566777777777665 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00016      0.49       1      22 [.     382     403 ..     382     413 .. 0.88
   2 !   44.3   0.0   5.4e-15   1.6e-11       2      81 ..     575     650 ..     574     658 .. 0.89
   3 !   14.1   0.0   1.4e-05     0.043       2      65 ..     694     754 ..     693     775 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
       PAS_3   1 iiyvserveeilGyspeellgk 22 
                 iiyvs+++++++Gys++++ g+
  CCE27565.1 382 IIYVSDNFQNLTGYSRHDIVGQ 403
                 69*****************998 PP

  == domain 2  score: 44.3 bits;  conditional E-value: 5.4e-15
       PAS_3   2 iyvserveeilGyspeellgkveswldlvhpeDrervrealqealkkgepyegeyRirrkdGeyrwveararvirdengk 81 
                 +y+s++ +++l y+  +l g+  s+ +++hp D+  v ++l++a ++++ +++ +Rirrk+ +y+w+e++++ +  e+gk
  CCE27565.1 575 LYLSPSSKRVLEYDTVDLVGN--SLSSVCHPSDIVPVTRELKDATAGNQ-VNIVFRIRRKQSGYTWFESHGSLF-VEQGK 650
                 799******************..*********************97666.9**********************9.55544 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 1.4e-05
       PAS_3   2 iyvserveeilGyspeellgkveswldlvhpeDrervrealqealkkgepyegeyRirrkdGey 65 
                 ++vs +v+ +l+++pe+llg+  s+ dl+  e r+++ +++++a +++  +++ + ++++ G+ 
  CCE27565.1 694 LFVSSNVRSLLDLQPESLLGT--SIQDLMRKESRPEFGRSIEQARRGKI-VTCKHEVQNRRGQG 754
                 79*******************..*********************85555.66666666666665 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.6e-07   0.00048      23     112 ..     382     481 ..     372     482 .. 0.90
   2 !   26.6   0.0   1.5e-09   4.6e-06       6     111 ..     557     660 ..     555     662 .. 0.96
   3 !   11.7   0.0   6.8e-05       0.2      19      69 ..     689     739 ..     687     762 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.6e-07
                 EEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH...........HHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEE CS
         PAS  23 ilyvNaaaeellGlsreevlgkslldliheedda...........elaelleqlleqgeesrageisfklrdgrpihlevraspvrdaggeilgflgvl 110
                 i+yv+++++ l+G+sr +++g++   l +++                +  l++ +++g+e ++  i+ ++  g+p+  ++++ p+ +  +ei++f+g+ 
  CCE27565.1 382 IIYVSDNFQNLTGYSRHDIVGQNCRFLQSPDGKVeagskrefvdeGAVYNLKTMIQEGREVQQSLINYRK-GGKPFLNLLTMIPIPWDTEEIRYFIGFQ 479
                 89***********************888887777999999666655555799999999999999999999.***************************8 PP

                 EE CS
         PAS 111 rd 112
                  d
  CCE27565.1 480 ID 481
                 87 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 1.5e-09
                 HHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC..TTSSEEEEEEEEEEEEETTEE CS
         PAS   6 ileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl..rdgrpihlevraspvrdagge 102
                 +le+++d + v+  +g +ly +++  + l ++  +++g sl+ + h+     +   +++ l++++ +++++i f+   ++ +++++e + s +++ g+ 
  CCE27565.1 557 LLENTDDVVHVLSLKGLFLYLSPSSKRVLEYDTVDLVGNSLSSVCHPS----DIVPVTRELKDATAGNQVNIVFRIrrKQSGYTWFESHGSLFVEQGKG 651
                 79****************************************999999....899******************************************99 PP

                 EEEEEEEEE CS
         PAS 103 ilgflgvlr 111
                 ++++++v+r
  CCE27565.1 652 RKCIILVGR 660
                 999999998 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 6.8e-05
                 TTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHT CS
         PAS  19 edgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqg 69 
                  +g +l+v+++ ++ll l++e +lg s+ dl+  e++ e+ + +eq+++ +
  CCE27565.1 689 TSGMFLFVSSNVRSLLDLQPESLLGTSIQDLMRKESRPEFGRSIEQARRGK 739
                 5899*******************************9989999999998876 PP

>> PAS_11  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.071   2.1e+02      66      96 ..     234     264 ..     226     274 .. 0.72
   2 !   17.9   0.0   8.4e-07    0.0025      12      96 ..     572     651 ..     563     658 .. 0.87
   3 !   16.8   0.0   1.8e-06    0.0054       2     109 ..     681     783 ..     680     787 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.071
      PAS_11  66 atsslyRLrlsqdkfvkvktksklfknqksn 96 
                 ++s +  + +++dk v+v+t+     n+ s 
  CCE27565.1 234 SHSVSRSMNSRSDKTVHVHTTQIDAVNPASR 264
                 4555566888**********98777776665 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 8.4e-07
      PAS_11  12 gkIisvDtsaLrasfslglekeelvgrsiydLchpqdlstlkshlrevissngeatsslyRLrlsqdkfvkvktksklfknqksn 96 
                 g ++ + +   +++ +l + + +lvg s+   chp d   +++ l++ +   g++   ++R+r +q  + +    + lf +q + 
  CCE27565.1 572 GLFLYLSP---SSKRVLEYDTVDLVGNSLSSVCHPSDIVPVTRELKDAT--AGNQVNIVFRIRRKQSGYTWFESHGSLFVEQGKG 651
                 55556666...6777889999****************************..9999************************998765 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 1.8e-06
      PAS_11   2 eqfttrldidgkIisvDtsaLrasfslglekeelvgrsiydLchpqdlstlkshlrevissngeatsslyRLrlsqdkfvkvktksklfknqksneqdf 100
                 ++++t+l+++g ++ v +   +    l l+ e+l+g+si+dL+ ++ + +  +  ++    +g+  +     + ++++ ++++t+++  + ++ +++ f
  CCE27565.1 681 SELWTKLSTSGMFLFVSS---NVRSLLDLQPESLLGTSIQDLMRKESRPEFGRSIEQAR--RGKIVTCKHEVQNRRGQGLQAQTTLYPGDASEGQKPSF 774
                 6899**************...999999999999*******************9999999..7887777788999****************999999999 PP

      PAS_11 101 imathtlls 109
                 ++a   ll+
  CCE27565.1 775 LLAQTKLLK 783
                 999877765 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.33   9.8e+02      14      44 ..     379     408 ..     366     466 .. 0.79
   2 !   13.2   0.0   2.7e-05     0.079       1      68 [.     558     625 ..     558     659 .. 0.86
   3 !   15.9   0.0   3.9e-06     0.012       8      94 ..     684     770 ..     680     778 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.33
       PAS_4  14 dgrvlyaNaaaaelfgappeellGktlaell 44 
                 d  ++y++ +++ l g+++++++G+ ++ +l
  CCE27565.1 379 DCPIIYVSDNFQNLTGYSRHDIVGQNCR-FL 408
                 55699*******************9988.33 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.7e-05
       PAS_4   1 ldslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepief 68 
                 l+++ d+++vl+  g +ly+++++ +++ ++  +l+G +l ++  ++d  ++ r l+ + +g+++ + 
  CCE27565.1 558 LENTDDVVHVLSLKGLFLYLSPSSKRVLEYDTVDLVGNSLSSVCHPSDIVPVTRELKDATAGNQVNIV 625
                 7999*********************************************************9876554 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 3.9e-06
       PAS_4   8 lavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGe 94 
                 ++ l++ g +l+++ + ++l+ ++pe+llG + ++l+ +e+++++ r ++++ +g+ +   +e+ ++ g++   +++l+P ++++G+
  CCE27565.1 684 WTKLSTSGMFLFVSSNVRSLLDLQPESLLGTSIQDLMRKESRPEFGRSIEQARRGKIVTCKHEVQNRRGQGLQAQTTLYPGDASEGQ 770
                 55567889999********************************************9999999999999999999******9999987 PP

>> PAS_2  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.6   1.7e+04      68      96 ..     300     331 ..     285     336 .. 0.57
   2 ?    3.8   0.0      0.03        89      22      56 ..     376     410 ..     369     459 .. 0.85
   3 ?   -1.7   0.0       1.6   4.7e+03      34      81 ..     580     627 ..     572     641 .. 0.71
   4 !   12.8   0.0   4.9e-05      0.15      28      69 ..     693     734 ..     687     759 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.6
                 -CCCHCCCCCEEEEEEE..CCCEEEEEEEE.C CS
       PAS_2  68 sareisllnpilihsrt..sgkpfyailhr.i 96 
                 s +++++   i+  s+t     p  a++hr +
  CCE27565.1 300 SPQRVTSSTSITRASSTsgPTTPTTATVHRdS 331
                 44445555555555444345567777777744 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.03
                 ETTTTEEEEEETTHHHHCSS-CCCCTTTCCCCCSE CS
       PAS_2  22 dekslrvlqvSeNaaemLglteekllgtdlrallt 56 
                   +++ ++ vS+N +++ g + ++ +g++ r l +
  CCE27565.1 376 TMNDCPIIYVSDNFQNLTGYSRHDIVGQNCRFLQS 410
                 557899***************99999999987765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.6
                 THHHHCSS-CCCCTTTCCCCCSECTTHHHHCCHS-CCCHCCCCCEEEE CS
       PAS_2  34 NaaemLglteekllgtdlralltassaalLekalsareisllnpilih 81 
                   + +L+  + +l+g+ l+++ ++s ++ + + l+ ++  +   i ++
  CCE27565.1 580 SSKRVLEYDTVDLVGNSLSSVCHPSDIVPVTRELKDATAGNQVNIVFR 627
                 566778888888999999999999999888877776665544444444 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 4.9e-05
                 EEEEETTHHHHCSS-CCCCTTTCCCCCSECTTHHHHCCHS-C CS
       PAS_2  28 vlqvSeNaaemLglteekllgtdlralltassaalLekalsa 69 
                  l vS N++++L+l++e+llgt +++l++++s     + +++
  CCE27565.1 693 FLFVSSNVRSLLDLQPESLLGTSIQDLMRKESRPEFGRSIEQ 734
                 5779*************************9987766665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1012 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 6433.97
//
Query:       CCE27566.1  [L=1028]
Description: probable beta karyopherin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-33  113.5   1.7    4.3e-33  113.5   1.7    4.6  5  Importin_rep_4   Importin repeat
    2.7e-19   69.3  12.2    1.2e-08   35.2   0.4    8.5  8  HEAT_EZ          HEAT-like repeat
      4e-16   57.7  14.6      0.018   15.3   0.0   10.6  8  HEAT             HEAT repeat
    3.4e-14   53.0  13.7    1.1e-06   28.9   0.1    7.5  7  HEAT_2           HEAT repeats
      3e-12   46.6   2.4    1.8e-10   40.9   0.0    3.6  3  Importin_rep_6   Importin repeat 6
    9.5e-12   45.4   1.1      0.018   15.6   0.0    7.1  7  Vac14_Fab1_bd    Vacuolar 14 Fab1-binding region
    1.5e-09   37.9   0.1    0.00014   21.7   0.1    5.2  6  RIX1             rRNA processing/ribosome biogenesis
      3e-09   35.8   6.6     0.0023   16.3   0.7    4.3  4  DRIM             Down-regulated in metastasis
    7.5e-08   31.9   2.9    7.3e-07   28.7   0.3    3.2  3  MMS19_C          RNAPII transcription regulator C-terminal
    3.4e-07   30.3   0.2        0.2   11.6   0.1    6.4  6  DUF3385          Domain of unknown function (DUF3385)
    4.4e-07   29.7   4.9    0.00062   19.4   0.2    5.5  6  CLASP_N          CLASP N terminal
    4.3e-05   23.0   1.1    0.00014   21.2   0.5    2.2  2  DUF3535          Domain of unknown function (DUF3535)
     0.0001   22.2   6.2       0.65   10.1   0.1    5.2  5  Arm              Armadillo/beta-catenin-like repeat
    0.00014   22.1   2.7    0.00014   22.1   2.7    3.2  3  Importin_rep_5   Importin repeat
    0.00075   19.4   4.7    0.00083   19.2   0.1    3.5  4  IBN_N            Importin-beta N-terminal domain
     0.0015   18.3   0.7      0.059   13.1   0.0    3.4  3  DNA_alkylation   DNA alkylation repair enzyme
     0.0022   16.5   0.2       0.93    7.9   0.1    3.2  3  CAS_CSE1         CAS/CSE protein, C-terminus
     0.0023   18.1   0.7       0.16   12.1   0.5    4.0  5  RTP1_C1          Required for nuclear transport of RNA pol II
     0.0026   16.4   7.6      0.024   13.2   0.6    3.7  4  Adaptin_N        Adaptin N terminal region
     0.0032   17.5   1.0      0.061   13.4   0.0    3.7  4  Xpo1             Exportin 1-like protein
  ------ inclusion threshold ------
      0.013   14.8   8.8      0.014   14.7   0.3    3.3  3  V-ATPase_H_N     V-ATPase subunit H
      0.027   14.3   2.6         19    5.1   0.0    4.2  3  BP28CT           BP28CT (NUC211) domain
      0.047   13.8   2.8        8.5    6.4   0.3    4.0  4  ParcG            Parkin co-regulated protein
      0.052   14.0   6.2      0.082   13.4   0.9    3.5  3  Telomere_reg-2   Telomere length regulation protein
      0.061   13.3   4.7         11    6.0   0.1    4.1  3  Nitrate_red_del  Nitrate reductase delta subunit
      0.091   12.2   0.9        0.5    9.8   0.0    2.5  3  MIF4G_like_2     MIF4G like
       0.12   12.1   1.2        1.1    9.1   0.0    3.2  4  TFCD_C           Tubulin folding cofactor D C terminal
        0.5    9.4   3.2        1.7    7.7   0.0    3.0  3  Dopey_N          Dopey, N-terminal
        7.2    6.4  14.0          1    9.2   0.2    3.3  4  Apolipoprotein   Apolipoprotein A1/A4/E domain


Domain annotation for each model (and alignments):
>> Importin_rep_4  Importin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       8.7   5.4e+03       8      48 ..     194     231 ..     190     243 .. 0.61
   2 ?    4.8   0.0     0.056        35      11      31 ..     242     262 ..     234     274 .. 0.77
   3 !  113.5   1.7   6.9e-36   4.3e-33       1      89 [.     275     367 ..     275     368 .. 0.97
   4 ?   -1.0   0.0       3.5   2.2e+03       9      44 ..     511     546 ..     504     553 .. 0.75
   5 ?   -1.7   0.0         6   3.7e+03       9      21 ..     678     690 ..     674     696 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 8.7
  Importin_rep_4   8 aRqsalEllvtlaenaPkmvrk.eaefteklvvqvLslmtev 48 
                     +R +a+E ++++  +   + +k ++++   l++++L+++  +
      CCE27566.1 194 VRLAAMEAFASFFST---IGKKsQPKY-YPLIPDILNILPPI 231
                     566666655555443...444404455.58999999988766 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.056
  Importin_rep_4  11 salEllvtlaenaPkmvrkea 31 
                     +al  l+ lae+aPkm+++  
      CCE27566.1 242 KALLALIDLAETAPKMFKQLF 262
                     5778899**********9754 PP

  == domain 3  score: 113.5 bits;  conditional E-value: 6.9e-36
  Importin_rep_4   1 nkdledaaRqsalEllvtlaenaPkmvrkeaefteklvvqvLslmtev....eddeeWatsddlddddeedeyvaaeqalDRlalkLGGkall 89 
                     +kdl++  Rq+alEl++t+a+ aP+m+rk++++t+++++q+Lslmt++    +d+ eW +sddld+d+ ++++va+eq++DRla+kLGG+++l
      CCE27566.1 275 DKDLDSICRQNALELMATFADHAPSMCRKDPSYTNDMITQCLSLMTDLgeddDDASEWLASDDLDQDESDQNHVAGEQTMDRLANKLGGQTIL 367
                     69***********************************************9988999**********************************998 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 3.5
  Importin_rep_4   9 RqsalEllvtlaenaPkmvrkeaefteklvvqvLsl 44 
                      ++al  ++t+a++a + + k  +    l+v vL+ 
      CCE27566.1 511 QEQALSTIATIADAAQAAFSKYYDTLMPLLVSVLQN 546
                     578999999999999999988777777777777665 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 6
  Importin_rep_4   9 RqsalEllvtlae 21 
                     +++a+Ellv++++
      CCE27566.1 678 KHMAIELLVVYSQ 690
                     689******9986 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.16        96      18      53 ..     172     203 ..     156     205 .. 0.72
   2 ?   -0.4   0.0       2.8   1.7e+03       4      43 ..     283     329 ..     280     335 .. 0.76
   3 !   35.2   0.4     2e-11   1.2e-08       1      55 []     383     437 ..     383     437 .. 0.98
   4 !    8.4   0.0    0.0051       3.2      23      52 ..     447     476 ..     442     479 .. 0.86
   5 !   19.1   0.2   2.2e-06    0.0014       2      53 ..     467     519 ..     466     521 .. 0.93
   6 !    9.8   0.0    0.0019       1.2       3      42 ..     510     550 ..     508     562 .. 0.84
   7 ?   -1.9   0.0       8.5   5.3e+03      10      33 ..     567     586 ..     555     595 .. 0.75
   8 ?    6.3   0.0     0.023        14      14      53 ..     896     935 ..     870     936 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.16
     HEAT_EZ  18 epellqplvpeilpaLlalLnddsd.eVRaaAagaLg 53 
                 e+++ ++++++  + +l     d+d +VR aA  a++
  CCE27566.1 172 EKQHEETVLQAFQKGFL-----DEDvTVRLAAMEAFA 203
                 56677777788888888.....8888******99986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.8
     HEAT_EZ   4 RraAawaLGr.......laggepellqplvpeilpaLlalLnddsde 43 
                 R +A+  +++       ++   p + ++++++ l ++  l +dd+d+
  CCE27566.1 283 RQNALELMATfadhapsMCRKDPSYTNDMITQCLSLMTDLGEDDDDA 329
                 56666666666666666777778888899999999999999999985 PP

  == domain 3  score: 35.2 bits;  conditional E-value: 2e-11
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 wr R+aA++a++++ +g+++l+ ++++++l++ +++L d +++VR+a + aLg++
  CCE27566.1 383 WRDRHAALMAISAISEGCRDLMIGELSQVLDLVIPALHDAHPRVRWAGCNALGQM 437
                 888**************************************************97 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0051
     HEAT_EZ  23 qplvpeilpaLlalLnddsdeVRaaAagaL 52 
                  ++ +++l+a ++ Ln+++++V+  Aa aL
  CCE27566.1 447 TDFYDRVLKAIVPVLNSPEARVKSHAAAAL 476
                 457889**********************99 PP

  == domain 5  score: 19.1 bits;  conditional E-value: 2.2e-06
     HEAT_EZ   2 rvRraAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 rv+ +Aa+aL + +++  + +l+p+++ +l+ L +lL++d+  V+++A+ +++
  CCE27566.1 467 RVKSHAAAALVNfCEEAQKSTLEPYLDNLLAHLFQLLQSDKRYVQEQALSTIA 519
                 78999*****99************************************99986 PP

  == domain 6  score: 9.8 bits;  conditional E-value: 0.0019
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalL.nddsd 42 
                 v++ A+++++++a  +  + +++ + ++p+L++ L n +++
  CCE27566.1 510 VQEQALSTIATIADAAQAAFSKYYDTLMPLLVSVLqNQSEK 550
                 89******************************999555766 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 8.5
     HEAT_EZ  10 aLGrlaggepellqplvpeilpaL 33 
                 aL+   +g+ +l q+ v+ ++++L
  CCE27566.1 567 ALA---VGRERLGQDTVT-LVKLL 586
                 554...999999998887.55555 PP

  == domain 8  score: 6.3 bits;  conditional E-value: 0.023
     HEAT_EZ  14 laggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 ++++++++ q + + i  +Ll + +d+s+++R+aAa+ +g
  CCE27566.1 896 VLEHCGPDSQRYSSFIAQPLLDGCRDPSAAIRQAAAYGIG 935
                 668999999999999*********************9877 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       3.2     2e+03       1      24 [.     141     164 ..     141     166 .. 0.87
   2 !    9.8   0.0    0.0017       1.1       2      29 ..     180     207 ..     179     209 .. 0.89
   3 ?    2.8   0.1      0.29   1.8e+02      17      31 .]     386     400 ..     376     400 .. 0.87
   4 !   15.3   0.0   2.8e-05     0.018       1      28 [.     411     438 ..     411     441 .. 0.92
   5 !    8.7   0.1    0.0036       2.2       2      29 ..     454     481 ..     453     483 .. 0.91
   6 ?    4.9   0.1      0.06        37       1      29 [.     495     523 ..     495     525 .. 0.92
   7 ?    1.0   0.0       1.1     7e+02       1      18 [.     870     887 ..     870     890 .. 0.91
   8 !   13.0   0.0   0.00016     0.096       4      26 ..     914     936 ..     911     940 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 3.2
                 HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaL 24 
                 ll +l +l + p+   Re+A++ +
  CCE27566.1 141 LLGVLFQLSQAPDVGKRENAFRVF 164
                 678899999***********9876 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0017
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 l +++k   D++  VR aA +a++ + +
  CCE27566.1 180 LQAFQKGFLDEDVTVRLAAMEAFASFFS 207
                 7899***99**************98865 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHCS CS
        HEAT  17 ReaAakaLgalaevl 31 
                 R aA+ a+ a++e++
  CCE27566.1 386 RHAALMAISAISEGC 400
                 99***********98 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 +l+l++ +l+D +p+VR a ++aLg+++
  CCE27566.1 411 VLDLVIPALHDAHPRVRWAGCNALGQMS 438
                 58999*********************97 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.0036
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 l +++  l++p+++V + Aa aL++++e
  CCE27566.1 454 LKAIVPVLNSPEARVKSHAAAALVNFCE 481
                 6678889********************8 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 ll +l +ll+++   V e A+ +++++a 
  CCE27566.1 495 LLAHLFQLLQSDKRYVQEQALSTIATIAD 523
                 67899*********************996 PP

  == domain 7  score: 1.0 bits;  conditional E-value: 1.1
                 HHHHHHHHHT-SSHHHHH CS
        HEAT   1 llPlllkllsDpspeVRe 18 
                 l+P+    l++p+p +R+
  CCE27566.1 870 LMPIYEGFLRSPDPTQRQ 887
                 79999999*********7 PP

  == domain 8  score: 13.0 bits;  conditional E-value: 0.00016
                 HHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLga 26 
                 +ll  ++Dps+ +R+aAa+ +g 
  CCE27566.1 914 PLLDGCRDPSAAIRQAAAYGIGV 936
                 578889**************996 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       4.7   2.9e+03       3      24 ..      14      34 ..      12      57 .. 0.72
   2 !   10.0   0.1    0.0015      0.91       3      87 ..     103     202 ..     100     203 .. 0.83
   3 ?   -2.3   0.0       9.5   5.9e+03      33      58 ..     266     293 ..     232     301 .. 0.52
   4 !   20.7   0.0   6.6e-07   0.00041       8      60 ..     377     439 ..     372     448 .. 0.81
   5 !   28.9   0.1   1.8e-09   1.1e-06       2      72 ..     413     493 ..     412     495 .. 0.92
   6 !    8.1   0.1    0.0057       3.5       2      44 ..     497     548 ..     496     588 .. 0.72
   7 ?    5.2   0.1     0.046        28       3      58 ..     914     984 ..     911    1004 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 4.7
      HEAT_2  3 aLlqalendpdpevrraairaL 24
                +Llqal ++++  +r +a + L
  CCE27566.1 14 QLLQAL-QSANNVTRSQAEDHL 34
                678888.677777777775555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0015
      HEAT_2   3 aLlqalendpdpevrraairaLgrignp.........ealpaLvellededpavRraaaeaL....gaig...dpealpaLkellddddddvvReaAae 85 
                 +Ll+ l++  d  vr ++ +a ++i+ +         e+l  L++l + +d   R++a +      g i    ++ +l+a ++ ++d+d+ v R aA e
  CCE27566.1 103 KLLETLATETDRTVRNKISDAVAEIARQytdnndlwpELLGVLFQLSQAPDVGKRENAFRVFkttpGIIEkqhEETVLQAFQKGFLDEDVTV-RLAAME 200
                 79999999***************9988888888888899********************9884444555433368899*******9877765.889988 PP

      HEAT_2  86 aL 87 
                 a 
  CCE27566.1 201 AF 202
                 86 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 9.5
      HEAT_2  33 lpaLvelleded..pavRraaaeaLgai 58 
                 ++  v++++d+d  +  R++a e ++ +
  CCE27566.1 266 VQFSVSVIQDKDldSICRQNALELMATF 293
                 4444445555542233666666655555 PP

  == domain 4  score: 20.7 bits;  conditional E-value: 6.6e-07
      HEAT_2   8 lendpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgaigd 60 
                 + ++  +  r+aa++a+  i +           ++l++++++l d++p+vR+a ++aLg++ +
  CCE27566.1 377 MMTSMAWRDRHAALMAISAISEGcrdlmigelsQVLDLVIPALHDAHPRVRWAGCNALGQMST 439
                 55788899**********55444445566666799*************************975 PP

  == domain 5  score: 28.9 bits;  conditional E-value: 1.8e-09
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaLgaigdpealpaLkelld 72 
                 d+ + al +d++p vr+a + aLg++ ++           ++l+a+v++l++++++v  +aa aL+ + +++  + L+ +ld
  CCE27566.1 413 DLVIPAL-HDAHPRVRWAGCNALGQMSTDfapkmqtdfydRVLKAIVPVLNSPEARVKSHAAAALVNFCEEAQKSTLEPYLD 493
                 788999*.9***************888877778989999999****************************999999998886 PP

  == domain 6  score: 8.1 bits;  conditional E-value: 0.0057
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp..........ealpaLvelleded 44 
                 ++L q+l ++   +v+ +a+ ++++i++           +++p+Lv++l++++
  CCE27566.1 497 AHLFQLL-QSDKRYVQEQALSTIATIADAaqaafskyydTLMPLLVSVLQNQS 548
                 6788988.566679999999999988887666666666566888888885543 PP

  == domain 7  score: 5.2 bits;  conditional E-value: 0.046
      HEAT_2   3 aLlqalendpdpevrraairaLg...rignp.......ealpaLvell......ededpavRraaaeaLgai 58 
                 +Ll    +dp+ ++r+aa+  +g   r+g          ++p+L++++      +de+ +  ++a+ a+++i
  CCE27566.1 914 PLLDGC-RDPSAAIRQAAAYGIGvaaRYGGAgwtqflgGSVPYLLQVIqvpearSDENVYATENACAAIAKI 984
                 566667.78888888888888886554443344444445577777766544444455555666666666555 PP

>> Importin_rep_6  Importin repeat 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       5.8   3.6e+03      72     107 ..     238     276 ..     237     277 .. 0.72
   2 ?    3.3   0.1      0.14        86      77     107 ..     517     547 ..     504     548 .. 0.86
   3 !   40.9   0.0     3e-13   1.8e-10       6     105 ..     774     879 ..     770     882 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.8
  Importin_rep_6  72 deinkslaailkakk...seylpalqtllplissylqde 107
                     d+++k+l a++  ++   + + + +q+l+++  s++qd+
      CCE27566.1 238 DDLSKALLALIDLAEtapKMFKQLFQNLVQFSVSVIQDK 276
                     7888888887754431116788899***99999999986 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.14
  Importin_rep_6  77 slaailkakkseylpalqtllplissylqde 107
                     ++a+i  a++ ++ + ++tl+pl+ s+lq++
      CCE27566.1 517 TIATIADAAQAAFSKYYDTLMPLLVSVLQNQ 547
                     6899999*********************986 PP

  == domain 3  score: 40.9 bits;  conditional E-value: 3e-13
  Importin_rep_6   6 hsalvdgleilganalsedqlakftkgvsanlsdvyervkerened.deynedvdddyddyt.....dedlldeinkslaailkakkseylpalq 94 
                     ++++ +++e++g+n+l+ ++++ f  +v + + +  +r  +r + +     +dv+d+ ++       d+ ll ++nk++ +i+k+++s++lpa +
      CCE27566.1 774 YQCFYESVEVVGKNCLTAAHMNGFIDSVRSTIDEYRHRAVQRAEYKaAATADDVEDEAEELQreieeDQTLLSDMNKAFHSIFKNHGSAFLPAWE 868
                     78899*****************************999988887644144556666666665322222678************************* PP

  Importin_rep_6  95 tllplissylq 105
                     +l+p+ + +l+
      CCE27566.1 869 RLMPIYEGFLR 879
                     *****999997 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.036        22      23      82 ..     174     239 ..     165     251 .. 0.77
   2 ?    1.2   0.1      0.94   5.8e+02       9      57 ..     246     296 ..     239     334 .. 0.64
   3 !   12.1   0.0   0.00036      0.22       2      51 ..     385     434 ..     384     445 .. 0.92
   4 !   15.6   0.0   2.9e-05     0.018       7      86 ..     431     512 ..     429     516 .. 0.86
   5 ?    1.6   0.0      0.69   4.3e+02       6      42 ..     514     550 ..     510     554 .. 0.88
   6 ?    1.1   0.0      0.97     6e+02       4      78 ..     562     635 ..     559     642 .. 0.80
   7 ?   -0.1   0.0       2.3   1.5e+03      20      47 ..     903     930 ..     885     934 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.036
  Vac14_Fab1_bd  23 eyleeivkpvlkcfsDkdsrvRyyacEsl...y.niakvakgevlkllneifdal..vklvaDsde 82 
                    ++ e++++   k f D+d  vR  a+E++   +  i k+++ +   l+ +i+++l  +k++ Dsd 
     CCE27566.1 174 QHEETVLQAFQKGFLDEDVTVRLAAMEAFasfFsTIGKKSQPKYYPLIPDILNILppIKISHDSDD 239
                    5667888999999**************852224247789999999999999999855677777775 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.94
  Vac14_Fab1_bd   9 gLaavaialekkikeyleeivkpvlkcfsDkd..srvRyyacEslyniakv 57 
                    +L  +a +  k  k+ ++++v+  +++++Dkd  s +R  a E +   a  
     CCE27566.1 246 ALIDLAETAPKMFKQLFQNLVQFSVSVIQDKDldSICRQNALELMATFADH 296
                    444444444555788888889988999988752256787777777665555 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00036
  Vac14_Fab1_bd   2 arkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEsl 51 
                     r+++l+++ a++ + +  +   l+++++ v+ +++D+  rvR+  c +l
     CCE27566.1 385 DRHAALMAISAISEGCRDLMIGELSQVLDLVIPALHDAHPRVRWAGCNAL 434
                    58899***********9999999************************998 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 2.9e-05
  Vac14_Fab1_bd   7 ligLaavaialekk.ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlk.llneifdalvklvaDsdesvks 86 
                      +L  ++ + + k  +++ ++++k ++ +++  ++rv+ +a+ +l n +  a+++ l+ +l +++  l++l+   ++ v++
     CCE27566.1 431 CNALGQMSTDFAPKmQTDFYDRVLKAIVPVLNSPEARVKSHAAAALVNFCEEAQKSTLEpYLDNLLAHLFQLLQSDKRYVQE 512
                    5677788888887756789************************************999879********9998777777765 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.69
  Vac14_Fab1_bd   6 gligLaavaialekkikeyleeivkpvlkcfsDkdsr 42 
                    +l ++a++a a +++ ++y +++++ ++++++ ++++
     CCE27566.1 514 ALSTIATIADAAQAAFSKYYDTLMPLLVSVLQNQSEK 550
                    678899999999999****************999876 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.97
  Vac14_Fab1_bd   4 kggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklva 78 
                    +++li+La     l++++ +   ++++ + + ++D+d+    y + +   +++v+ ++++ +l+++   l +l+a
     CCE27566.1 562 CASLIALAVGRERLGQDTVTL-VKLLANIQANITDADDPQAQYLMHCWGRMCRVMGTDFVPFLENVMPPLLELAA 635
                    567888888888888887655.46788889999999988888888999999999999999999999988888876 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 2.3
  Vac14_Fab1_bd  20 kikeyleeivkpvlkcfsDkdsrvRyya 47 
                    ++++y + i +p+l+ ++D ++ +R  a
     CCE27566.1 903 DSQRYSSFIAQPLLDGCRDPSAAIRQAA 930
                    57899999*************9999665 PP

>> RIX1  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       4.2   2.6e+03       9      38 ..       4      33 ..       2      78 .. 0.66
   2 ?    1.7   0.0       0.3   1.9e+02     111     182 ..     244     317 ..     232     321 .. 0.77
   3 ?    6.1   0.0     0.013       8.3      54     106 ..     419     471 ..     407     479 .. 0.83
   4 !   21.7   0.1   2.2e-07   0.00014      30     100 ..     479     549 ..     474     582 .. 0.87
   5 ?   -0.3   0.0       1.2   7.6e+02      46      78 ..     870     902 ..     828     917 .. 0.74
   6 ?   -1.2   0.0       2.3   1.4e+03      88     116 ..     953     986 ..     919     991 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4.2
        RIX1  9 Lsstppkelpsilstlashkllceellkse 38
                Ls + ++el ++l++l+s + +++++    
  CCE27566.1  4 LSAEAHAELTQLLQALQSANNVTRSQAEDH 33
                555566777777777777766655554433 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.3
        RIX1 111 lsriftltrgkptltREiltpnlpkfitallqlleee...letvlealstllplhPttfRpfankirslllslla 182
                 l  +++l+   p + +++ +  l +f  +++q  + +    + +le+++t   + P+ +R   + ++ +++++l+
  CCE27566.1 244 LLALIDLAETAPKMFKQLFQN-LVQFSVSVIQDKDLDsicRQNALELMATFADHAPSMCRKDPSYTNDMITQCLS 317
                 556666777777777777666.55555555555554499999******************998888888888875 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.013
        RIX1  54 lqskspegrwaGvcLakvtveesg.eellssgstWlrallsiLekpdppavlel 106
                 l++  p+ rwaG++ ++ + +    +     +   l+a++++L++p++++  ++
  CCE27566.1 419 LHDAHPRVRWAGCNALGQMSTDFApKMQTDFYDRVLKAIVPVLNSPEARVK-SH 471
                 89999************99997766999******************66543.33 PP

  == domain 4  score: 21.7 bits;  conditional E-value: 2.2e-07
        RIX1  30 lceellkseleelvhklvtrilsLlqskspegrwaGvcLakvtveesgeellssgstWlrallsiLekpdp 100
                  cee++ks+le  +++l +++ +Llqs++ +    ++  + +++++ +  + +++ t++  l+s+L+++++
  CCE27566.1 479 FCEEAQKSTLEPYLDNLLAHLFQLLQSDKRYVQEQALSTIATIADAAQAAFSKYYDTLMPLLVSVLQNQSE 549
                 699*******99********************************************************944 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 1.2
        RIX1  46 lvtrilsLlqskspegrwaGvcLakvtveesge 78 
                 l+     +l+s +p +r  G+c++  + e++g 
  CCE27566.1 870 LMPIYEGFLRSPDPTQRQWGLCILDDVLEHCGP 902
                 555556689999999999999999999998874 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 2.3
        RIX1  88 lrallsiLekp.....dppavlelaistlsrift 116
                 +  ll++++ p     +    +e a++++ +i++
  CCE27566.1 953 VPYLLQVIQVPearsdENVYATENACAAIAKILH 986
                 4446666666655565558889999999998887 PP

>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2   5.9e-05     0.036     400     595 ..      32     214 ..       2     231 .. 0.70
   2 ?    0.8   0.1      0.18   1.1e+02     560     610 ..     265     315 ..     232     320 .. 0.56
   3 !   16.3   0.7   3.7e-06    0.0023     339     444 ..     443     549 ..     437     590 .. 0.82
   4 !    5.6   0.0    0.0064       3.9     190     288 ..     600     710 ..     559     725 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.9e-05
        DRIM 400 kkdkskellereleiLsrlaplveds..eqassLldlllplLrkpsrrvsektkvelLkilenllrlydedevdlpekllktlsslfsrlkdreaRklL 496
                 ++ +++   +r   +L+ la++++ s  ++a+s+  +++  +  ++r+++ +   + L i+ +l ++       ++  + ++l+  +++  dr++R+ +
  CCE27566.1  32 DHLQNNWTGNRPEMLLVGLAEHIQRSgdNSARSFAAVIFRRIASKNRKTDTN---NTLDIFYSLPKE-------QAIVIRQKLLETLATETDRTVRNKI 120
                 4445566666666789999999999942244467777776776666655555...777777777776.......3467777888888889999999999 PP

        DRIM 497 cevlkalakkdpeleevadllsdLNayskrrldepDfdrRlsAFkkinee..kyksltleqwlpllhnclffirdeeelsirsnAsellkrfieaaask 593
                 +++++++a++ +      dl  +L  +  +  + pD  +R++AF+ ++++    ++  +e  l+     ++    +e++++r +A e++ +f++++ +k
  CCE27566.1 121 SDAVAEIARQYT---DNNDLWPELLGVLFQLSQAPDVGKRENAFRVFKTTpgIIEKQHEETVLQAFQKGFL----DEDVTVRLAAMEAFASFFSTIGKK 212
                 999999999877...4556666666665666778****************863355566677777777777....9********************998 PP

        DRIM 594 se 595
                 s+
  CCE27566.1 213 SQ 214
                 64 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.18
        DRIM 560 lhnclffirdeeel.si.rsnAsellkrfieaaaskseeepskleleellkdi 610
                 l+++   + ++++l si r+nA el+ +f ++a s   ++ps    +++++++
  CCE27566.1 265 LVQFSVSVIQDKDLdSIcRQNALELMATFADHAPSMCRKDPS--YTNDMITQC 315
                 333333333444442557999999999999998877666654..234455544 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 3.7e-06
        DRIM 339 pkakesVvefvldivenllkladeeeeee......edeeeigselLlphvsslLeylsalleksaaskkdkskellereleiLsrlaplveds..eqas 429
                 pk++     +vl+ +  +l+ ++++ +        ++ ee +++ L+p+++ lL++l +ll++        ++ + e++l+++  +a+ ++ +  +  +
  CCE27566.1 443 PKMQTDFYDRVLKAIVPVLNSPEARVKSHaaaalvNFCEEAQKSTLEPYLDNLLAHLFQLLQSD-------KRYVQEQALSTIATIADAAQAAfsKYYD 534
                 5666666789999999999999988776699999977789999******************655.......589************9999998334555 PP

        DRIM 430 sLldlllplLrkpsr 444
                 +L+ ll+++L+ +s+
  CCE27566.1 535 TLMPLLVSVLQNQSE 549
                 788888888877653 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0064
        DRIM 190 rqlgflnlledvlkelgsklapflpkllklllyclaaaqrrlkssseeeeeeeeevla.................sllkniRqlglkcLvdlfsnfges 271
                 + + +++    + +++g+ + pfl+ ++ +ll  laaa+++++  ++eee+e+  ++                  +     ++ ++++Lv + + ++  
  CCE27566.1 600 QAQYLMHCWGRMCRVMGTDFVPFLENVMPPLLE-LAAAKADIQLLEDEEEAEQ--MNGedgwefvplkgkmigirTSTMDDKHMAIELLVVYSQVLE-A 694
                 566788889999********************5.5555556655544333333..222456777777766666664455556777777776666666.3 PP

        DRIM 272 edwspyldaifeevvsP 288
                   + py+  i+e++  P
  CCE27566.1 695 -AFAPYVANIMEKIALP 710
                 .4788877777776655 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.29   1.8e+02      15     105 ..     236     324 ..     222     345 .. 0.70
   2 ?   -2.8   0.0       4.1   2.5e+03     350     391 ..     387     427 ..     375     435 .. 0.76
   3 !   28.7   0.3   1.2e-09   7.3e-07     329     421 ..     449     541 ..     448     543 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.29
     MMS19_C  15 sasayervLeaLaelss.ekqlfetlvirllnkldlvlksnessaayah.ailstllkllekkqtdlekeellnsyydrivprlltlvvsaas 105
                 +++ ++++L aL +l++  ++ f+ l   l++    v+++++     ++   l+ +++  ++         +  sy+++++ ++l+l+++  +
  CCE27566.1 236 DSDDLSKALLALIDLAEtAPKMFKQLFQNLVQFSVSVIQDKDL-DSICRqNALELMATFADHAP-S--MCRKDPSYTNDMITQCLSLMTDLGE 324
                 3333788999999999888999999999998888887777776.67777566666666666655.2..3455678888888888888776555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.1
     MMS19_C 350 enyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevk 391
                  + L+A+s + +   ++l++ eL+++l l++ aL+   + v+
  CCE27566.1 387 HAALMAISAISE-GCRDLMIGELSQVLDLVIPALHDAHPRVR 427
                 566777776544.44789999999999999999986666666 PP

  == domain 3  score: 28.7 bits;  conditional E-value: 1.2e-09
     MMS19_C 329 fFstvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksileespslvsehlssLvprLL 421
                 f++ vl+ +v   +s +   k+    AL + ++   ks+l p+L +Ll  L q L+ +++ v+  +L+t++ i++ +++++s++ ++L p L+
  CCE27566.1 449 FYDRVLKAIVPVLNSPEARVKSHAAAALVNFCEEAQKSTLEPYLDNLLAHLFQLLQSDKRYVQEQALSTIATIADAAQAAFSKYYDTLMPLLV 541
                 78999*************************************************************************************997 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.4   8.5e+02     106     141 ..     197     232 ..     157     294 .. 0.74
   2 ?   -1.1   0.0       2.6   1.6e+03      87     134 ..     370     420 ..     328     427 .. 0.68
   3 !   11.6   0.1   0.00032       0.2      70     157 ..     436     522 ..     429     526 .. 0.79
   4 !   10.5   0.1   0.00067      0.41      66     144 ..     474     551 ..     463     560 .. 0.81
   5 ?    5.7   0.0      0.02        13     113     142 ..     610     639 ..     580     645 .. 0.84
   6 ?    1.3   0.0      0.46   2.9e+02     117     117 ..     858     858 ..     804     976 .. 0.50

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.4
     DUF3385 106 avveaimnifktlglkcvpfLdqiipallsvirtte 141
                 a++ea  + f+t+g k+ p    +ip++l+++   +
  CCE27566.1 197 AAMEAFASFFSTIGKKSQPKYYPLIPDILNILPPIK 232
                 566777777788888887777777777777665443 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.6
     DUF3385  87 vinaLlrilkdpslsshha..avveaimnifktlglkc.vpfLdqiipall 134
                 ++n L r++   + ++ ha  ++++ai   ++ l ++   ++Ld +ipal 
  CCE27566.1 370 TFNWLPRMMTSMAWRDRHAalMAISAISEGCRDLMIGElSQVLDLVIPALH 420
                 566666777666666666522468888888888888876789999999875 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00032
     DUF3385  70 llmvglspsn.eeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkc.vpfLdqiipallsvirtteesnlrefllqqLatLv 157
                 +++++  p   +++y   v++a++ +l+ p  +  ++++  a++n +++ + +   p+Ld+++ +l++++++ ++  ++e  l+ +at+ 
  CCE27566.1 436 QMSTDFAPKMqTDFYDR-VLKAIVPVLNSPEAR-VKSHAAAALVNFCEEAQKSTlEPYLDNLLAHLFQLLQSDKR-YVQEQALSTIATIA 522
                 55566666665999988.99***********88.4455556788888876666659***************8776.99999999988875 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.00067
     DUF3385  66 tdlsllmvglspsneeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipallsvirtteesn 144
                   l ++  + ++s+ e y    ++ L ++l+  + +  +++++++i +i    +    ++ d ++p l+sv+++++e++
  CCE27566.1 474 AALVNFCEEAQKSTLEPYLDNLLAHLFQLLQSDK-RYVQEQALSTIATIADAAQAAFSKYYDTLMPLLVSVLQNQSEKE 551
                 444444667788889999999999******7766.5578999*******************************988744 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.02
     DUF3385 113 nifktlglkcvpfLdqiipallsvirttee 142
                  +++ +g+  vpfL++++p ll++    ++
  CCE27566.1 610 RMCRVMGTDFVPFLENVMPPLLELAAAKAD 639
                 578999****************98876655 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.46
     DUF3385 117 t 117
                 +
  CCE27566.1 858 N 858
                 2 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.6   4.1e+03       6      54 ..      83     131 ..      78     134 .. 0.76
   2 ?    2.7   0.0      0.12        77     170     208 ..     173     210 ..     158     219 .. 0.81
   3 ?   -1.7   0.0       2.8   1.7e+03      92     209 ..     262     299 ..     240     309 .. 0.46
   4 ?    5.3   0.0      0.02        12      17     118 ..     379     476 ..     367     484 .. 0.56
   5 !   19.4   0.2     1e-06   0.00062      54     126 ..     453     526 ..     436     552 .. 0.87
   6 ?    2.8   0.0      0.12        74      73     109 ..     604     640 ..     573     641 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.6
     CLASP_N   6 eellaafegketelnwdaReknilklrslikgnvpedaveelleclkql 54 
                 ++ l +f +  +e+ + +R+k + +l   +   v ++ ++++ e+ +q 
  CCE27566.1  83 NNTLDIFYSLPKEQAIVIRQKLLETLATETDRTVRNKISDAVAEIARQY 131
                 5666677777788888888888888888888888888888888887765 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.12
     CLASP_N 170 asllldliekslkkgleDanptVRetaRstfweffkvwP 208
                 +++  +++ ++++kg  D + tVR +a ++f +ff++  
  CCE27566.1 173 KQH-EETVLQAFQKGFLDEDVTVRLAAMEAFASFFSTIG 210
                 444.4788999***********************98765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.8
     CLASP_N  92 veillptLlkllgdt..KkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDa 188
                  ++l++  + +++d+    i +qna   +a++                                                                   
  CCE27566.1 262 FQNLVQFSVSVIQDKdlDSICRQNALELMATFA------------------------------------------------------------------ 294
                 333333333333322112344444444444444.................................................................. PP

     CLASP_N 189 nptVRetaRstfweffkvwPs 209
                                 +++Ps
  CCE27566.1 295 ----------------DHAPS 299
                 ................44444 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.02
     CLASP_N  17 telnwdaReknilklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeq.ldpmveillptLlkllgdtKkiisqna 114
                 t + w+ R ++++ +  + +  + + ++ el ++l  ++ a+ +a+  +r +++++++++  ++a   +++  d ++++++p+L     +   ++ + a
  CCE27566.1 379 TSMAWRDRHAALMAISAI-SEGCRDLMIGELSQVLDLVIPALHDAHPRVRWAGCNALGQMSTDFAPKMQTDfYDRVLKAIVPVL----NSPEARVKSHA 472
                 556677777777766444.33346666677777776666666666666776666666666666666666664444444444444....33334444444 PP

     CLASP_N 115 nqal 118
                 ++al
  CCE27566.1 473 AAAL 476
                 4444 PP

  == domain 5  score: 19.4 bits;  conditional E-value: 1e-06
     CLASP_N  54 lleailkalssLrttlsstgchllkelaiqlkeq.ldpmveillptLlkllgdtKkiisqnanqalaallsnas 126
                 +l+ai+  l+s    + s++   l +++++ +++ l+p++++ll +L++ll++ K  + ++a  ++a++  +a+
  CCE27566.1 453 VLKAIVPVLNSPEARVKSHAAAALVNFCEEAQKStLEPYLDNLLAHLFQLLQSDKRYVQEQALSTIATIADAAQ 526
                 56799999999999999999988888888888888**********************************98887 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.12
     CLASP_N  73 gchllkelaiqlkeqldpmveillptLlkllgdtKki 109
                 ++h   +++++ ++++ p++e+++p Ll+l +++ +i
  CCE27566.1 604 LMHCWGRMCRVMGTDFVPFLENVMPPLLELAAAKADI 640
                 5677779***********************9998766 PP

>> DUF3535  Domain of unknown function (DUF3535)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         3   1.9e+03     149     325 ..      63     112 ..      50     136 .. 0.53
   2 !   21.2   0.5   2.3e-07   0.00014     106     232 ..     423     549 ..     402     596 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3
     DUF3535 149 rlvaalvieewakedkkekk.........evstlpetlqeklleiLeeeepvyYdElalsltrlrqecqdllatlesvgklpklavvvqgeaekaftle 238
                 r +aa++   +a++++k+++           +  +  +++klle L+                                                    
  CCE27566.1  63 RSFAAVIFRRIASKNRKTDTnntldifysLPKEQAIVIRQKLLETLA---------------------------------------------------- 109
                 55666666666666654444555555554223334444444444444.................................................... PP

     DUF3535 239 qaeklvttdyekllkslslkqkllaekqLeerrrrlqaaieeakeeqealhvrvqaalAgAlvalkelPkKLnpvikpLMeSiKkEe 325
                                                                                                     +E 
  CCE27566.1 110 ------------------------------------------------------------------------------------TET 112
                 ....................................................................................333 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2.3e-07
     DUF3535 106 viraRiaaakaLGlllsylpeespldcytkvL...lghLnsksalqrlvaalvieewakedkkekkevstlpetlqeklleiLeee.epvy...YdEla 197
                   r R a+ +aLG+++  +  + ++d+y  vL   ++ Lns+ a  +  aa  + ++++e +  k++ +++ ++l  +l+++L+++ ++v     + +a
  CCE27566.1 423 HPRVRWAGCNALGQMSTDFAPKMQTDFYDRVLkaiVPVLNSPEARVKSHAAAALVNFCEEAQ--KSTLEPYLDNLLAHLFQLLQSDkRYVQeqaLSTIA 519
                 5699***************6666676666554222899**********************96..45667***************986443333355555 PP

     DUF3535 198 lsltrlrqecqdllatlesvgklpklavvvqgeae 232
                 ++  + ++  +++++tl     +p l  v q+++e
  CCE27566.1 520 TIADAAQAAFSKYYDTL-----MPLLVSVLQNQSE 549
                 55555666666666666.....5555555555555 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1     0.001      0.65      13      40 ..     453     480 ..     452     481 .. 0.93
   2 !    9.2   0.0    0.0021       1.3      14      40 ..     496     522 ..     493     523 .. 0.87
   3 ?   -1.7   0.1       5.7   3.5e+03      14      26 ..     537     549 ..     536     551 .. 0.84
   4 ?    0.0   0.0       1.6     1e+03      12      29 ..     625     643 ..     624     645 .. 0.76
   5 ?    0.6   0.0       1.1   6.7e+02      14      38 ..     953     983 ..     951     986 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.001
                 HHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  13 avppLvrLLssedeevqeeAawALsNLa 40 
                 ++++ v  L+s+  +v+  Aa+AL N +
  CCE27566.1 453 VLKAIVPVLNSPEARVKSHAAAALVNFC 480
                 68999*********************88 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0021
                 HHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  14 vppLvrLLssedeevqeeAawALsNLa 40 
                 + +L +LL+s++  vqe+A+++++ +a
  CCE27566.1 496 LAHLFQLLQSDKRYVQEQALSTIATIA 522
                 667889****************99877 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 5.7
                 HHHHHHHTTTSSH CS
         Arm  14 vppLvrLLssede 26 
                 +p Lv+ L++++e
  CCE27566.1 537 MPLLVSVLQNQSE 549
                 799******8876 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 1.6
                 THHHHHHHHTT.TSSHHHH CS
         Arm  12 GavppLvrLLs.sedeevq 29 
                 +++ppL++L     d +++
  CCE27566.1 625 NVMPPLLELAAaKADIQLL 643
                 89*******9866666655 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 1.1
                 HHHHHHHTT......TSSHHHHHHHHHHHHH CS
         Arm  14 vppLvrLLs......sedeevqeeAawALsN 38 
                 vp L++ ++      +e++  +e+A++A++ 
  CCE27566.1 953 VPYLLQVIQvpearsDENVYATENACAAIAK 983
                 6777777777777778899999******975 PP

>> Importin_rep_5  Importin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.84   5.2e+02      28      41 ..     408     421 ..     401     423 .. 0.85
   2 ?   -1.8   0.1       6.3   3.9e+03      12      36 ..     499     522 ..     497     528 .. 0.73
   3 !   22.1   2.7   2.3e-07   0.00014       1      18 [.    1011    1028 .]    1011    1028 .] 0.98

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.84
  Importin_rep_5  28 ipkvvdsVvqALea 41 
                     +++v+d V+ AL+ 
      CCE27566.1 408 LSQVLDLVIPALHD 421
                     789*********96 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 6.3
  Importin_rep_5  12 LsqLIdqnhpaVlsqnipkvvdsVv 36 
                     L qL+++ +  V +q +   +  ++
      CCE27566.1 499 LFQLLQSDKRYVQEQ-ALSTIATIA 522
                     889*********999.555555554 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 2.3e-07
  Importin_rep_5    1 DeEAApfaYrfLsqLIdq 18  
                      DeEAAp+aY++L++LIdq
      CCE27566.1 1011 DEEAAPYAYAYLAELIDQ 1028
                      9***************98 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   1.3e-06   0.00083      18      73 ..      50     109 ..      30     110 .. 0.78
   2 ?   -1.6   0.1       4.4   2.7e+03       6      35 ..     256     286 ..     251     290 .. 0.78
   3 ?   -1.2   0.0       3.2     2e+03      54      73 ..     491     519 ..     454     520 .. 0.69
   4 ?   -2.1   0.0         6   3.7e+03      11      30 ..     533     551 ..     528     555 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.3e-06
                 HHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHC......GSXHHHHHHHHHHHHHHHH CS
       IBN_N  18 llqilanseselevRqlAalyLknlitkhWsdeeekq......slpseekeqIrnnllnllg 73 
                 l + +++s +  ++R +Aa+++++  +k+ ++++ ++      slp+e+   Ir++ll++l+
  CCE27566.1  50 LAEHIQRSGDN-SARSFAAVIFRRIASKN-RKTDTNNtldifySLPKEQAIVIRQKLLETLA 109
                 45556666666.8*********9866666.65555559**********************97 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.4
                 HHHHC.STCHHHHHHHHHHCTTSHHHHHHHH CS
       IBN_N   6 kqlek.qpgflsallqilanseselevRqlA 35 
                 k +++ +++ +++ ++++++++++   Rq A
  CCE27566.1 256 KMFKQlFQNLVQFSVSVIQDKDLDSICRQNA 286
                 567777899999999*****99997777766 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.2
                 C.........GSXHHHHHHHHHHHHHHHH CS
       IBN_N  54 q.........slpseekeqIrnnllnllg 73 
                           +l +++k+++ +++l +++
  CCE27566.1 491 YldnllahlfQLLQSDKRYVQEQALSTIA 519
                 14445555557999999999999999886 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 6
                 STCHHHHHHHHHHCTTSHHH CS
       IBN_N  11 qpgflsallqilansesele 30 
                 + + +++l+++l+n++ + e
  CCE27566.1 533 YDTLMPLLVSVLQNQSEK-E 551
                 6777899*******9887.4 PP

>> DNA_alkylation  DNA alkylation repair enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.81     5e+02     102     158 ..     107     162 ..      22     174 .. 0.64
   2 !   13.1   0.0   9.6e-05     0.059      91     193 ..     342     449 ..     316     469 .. 0.81
   3 ?    0.1   0.0      0.91   5.6e+02     107     150 ..     480     524 ..     461     549 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.81
  DNA_alkylation 102 lvDslaskivgalladkperrdllkeWaksenlWerRaAivatlklikk.tdlellle 158
                     +  + ++++v++ + d  ++ + +++ + +++lW    +++++l+ + + +++e  ++
      CCE27566.1 107 TLATETDRTVRNKISD--AVAEIARQYTDNNDLWPELLGVLFQLSQAPDvGKRENAFR 162
                     4444444555555444..4888888888888888888888888888877766666555 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 9.6e-05
  DNA_alkylation  91 eklvetinnWdlvDslaskivgalladkperrdllkeWaksenlWerRaAivatlklikk.......tdlellleiaeelladkedfiqkAiGwa 178
                     e+  +++   +++D+la+k+ g+ +++     + l ++++s   W  R A+++ +++i +       ++l+++l+++   l+d + ++++A ++a
      CCE27566.1 342 ESDQNHVAGEQTMDRLANKLGGQTILAP--TFNWLPRMMTSM-AWRDRHAALMAISAISEgcrdlmiGELSQVLDLVIPALHDAHPRVRWAGCNA 433
                     5555566667889999999999999985..666667777664.6***************99********************************** PP

  DNA_alkylation 179 Lrelskt.dpdlveeF 193
                     L ++s    p+  ++F
      CCE27566.1 434 LGQMSTDfAPKMQTDF 449
                     ****987555555555 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.91
  DNA_alkylation 107 askivgalladk.perrdllkeWaksenlWerRaAivatlklikk 150
                     +++ +++ l+ + ++ +++l ++ +s++++++  A+++  + + +
      CCE27566.1 480 CEEAQKSTLEPYlDNLLAHLFQLLQSDKRYVQEQALSTIATIADA 524
                     555556666666666899999999999999999999988888776 PP

>> CAS_CSE1  CAS/CSE protein, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0015      0.93      17      84 ..     485     544 ..     480     554 .. 0.63
   2 ?    2.2   0.1     0.084        52     232     298 ..     521     593 ..     511     597 .. 0.78
   3 ?    4.6   0.0     0.015       9.4      26      79 ..     584     633 ..     565     637 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0015
    CAS_CSE1  17 kediaPlakdllenlFkllekdesaeklqENeylmkcimRvlivikeavlpvadvvlqkLieilevvs 84 
                 k++++P++ +ll++lF+ll++d+    +qE       ++  +++i++a+  + ++  + L+ +l  v 
  CCE27566.1 485 KSTLEPYLDNLLAHLFQLLQSDKR--YVQE------QALSTIATIADAAQAAFSKYYDTLMPLLVSVL 544
                 7899****************9998..4444......44444444444444444444444444444444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.084
    CAS_CSE1 232 ieslpaevlekylktilsllltrlqnsktekfkk......rlvvflslvsakddkglgadaliqlidkvQanv 298
                 i+  +++++ ky  t++ ll++ lqn+  ++++        ++ ++ l + ++  g  + +l++l+ ++Qan+
  CCE27566.1 521 IADAAQAAFSKYYDTLMPLLVSVLQNQSEKEYQLlrgkamECASLIALAVGRERLGQDTVTLVKLLANIQANI 593
                 55667788999***************99999985333222577777777788877888888999999999998 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.015
    CAS_CSE1  26 dllenlFkllekdesaeklqENeylmkcimRvlivikeavlpvadvvlqkLiei 79 
                 +ll+n+ + ++ ++        +ylm+c  R+  v+  + +p+ ++v+  L e+
  CCE27566.1 584 KLLANIQANITDADD----PQAQYLMHCWGRMCRVMGTDFVPFLENVMPPLLEL 633
                 556666666655555....6789************************9988765 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.9   1.8e+03      34      72 ..     172     210 ..     143     216 .. 0.77
   2 ?   -1.6   0.0       4.9     3e+03      18      53 ..     242     277 ..     241     301 .. 0.75
   3 ?   -2.0   0.0       6.6   4.1e+03      38      68 ..     408     438 ..     386     453 .. 0.58
   4 !   12.1   0.5   0.00027      0.16       5      75 ..     458     529 ..     454     562 .. 0.77
   5 ?   -2.1   0.0       7.1   4.4e+03       8      32 ..     878     902 ..     877     921 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.9
     RTP1_C1  34 avldiekilkllleaLkdedsYvYLnaikgLvaLadvfp 72 
                 ++++ e++l+ +++   ded  v L+a++++++  +++ 
  CCE27566.1 172 EKQHEETVLQAFQKGFLDEDVTVRLAAMEAFASFFSTIG 210
                 567888999999999999999999999998888777665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.9
     RTP1_C1  18 hglvlLrkliekkskeavldiekilkllleaLkded 53 
                 ++l+ L +l+e+  k  ++  +++++  ++ ++d+d
  CCE27566.1 242 KALLALIDLAETAPKMFKQLFQNLVQFSVSVIQDKD 277
                 577888888888887788888888888888888776 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 6.6
     RTP1_C1  38 iekilkllleaLkdedsYvYLnaikgLvaLa 68 
                 ++++l+l++ aL+d  + v  +  ++L ++ 
  CCE27566.1 408 LSQVLDLVIPALHDAHPRVRWAGCNALGQMS 438
                 5555566655555555555555555555444 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 0.00027
     RTP1_C1   5 lkdlqdpllpvrahglvlLrkliekkskeavl.diekilkllleaLkdedsYvYLnaikgLvaLadvfpeev 75 
                 +  l++p++ v++h+   L + +e+ +k++++  ++++l  l++ L+ +  Yv  +a ++++++ad+ ++ +
  CCE27566.1 458 VPVLNSPEARVKSHAAAALVNFCEEAQKSTLEpYLDNLLAHLFQLLQSDKRYVQEQALSTIATIADAAQAAF 529
                 56699*******************9987755426899***************************99876543 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 7.1
     RTP1_C1   8 lqdpllpvrahglvlLrkliekksk 32 
                 l++p +  r +gl  L +++e+  +
  CCE27566.1 878 LRSPDPTQRQWGLCILDDVLEHCGP 902
                 78999***********999987655 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.13        78     323     384 ..      84     147 ..      64     167 .. 0.74
   2 ?    2.5   0.1      0.07        43     153     199 ..     179     230 ..     157     292 .. 0.62
   3 ?    0.3   0.2      0.31   1.9e+02     132     195 ..     241     317 ..     220     334 .. 0.58
   4 !   13.2   0.6   3.9e-05     0.024      95     199 ..     429     546 ..     376     592 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.13
                 HHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHS...CCHHHHHHHHHHH CS
   Adaptin_N 323 kaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekf...atdaewvldvlle 384
                  +ld+ + l  e+ + +  k L + ++e+ d+ ++ k+ +a++++a ++    + +   l vl++
  CCE27566.1  84 NTLDIFYSLPKEQAIVIRQKLLETLATET-DRTVRNKISDAVAEIARQYtdnNDLWPELLGVLFQ 147
                 57899999999999976555555555555.999****************4433334455555555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.07
                 HHHHHHHCTT-SSHHHHHHHHHHHHHH.....HCCCCCCCHHHHHHHCCHHH CS
   Adaptin_N 153 lveeikellsdkdpgvvlaAvalleei.....kkndrlllkllpklvrrLcn 199
                 +++ +++ + d+d+ v laA  ++ +      kk++  +  l+p++ ++L  
  CCE27566.1 179 VLQAFQKGFLDEDVTVRLAAMEAFASFfstigKKSQPKYYPLIPDILNILPP 230
                 3455555556666666666666666555555555555555555555555544 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.31
                 HHHHHHHHHCCCCCHHCCCCCHHHHHHHCT...T-SS..HHHHHHHHHHHHHH.......HCCCCCCC.HHHHHHHC CS
   Adaptin_N 132 kkAalailklykkdpdllrkqlveeikell...sdkd..pgvvlaAvalleei.......kkndrlll.kllpklvr 195
                 +kA+la+++l +  p+ +++ + + ++ ++   +dkd   ++  +A+ l+           ++d +++ +++ +  +
  CCE27566.1 241 SKALLALIDLAETAPKMFKQLFQNLVQFSVsviQDKDldSICRQNALELMATFadhapsmCRKDPSYTnDMITQCLS 317
                 67888888888887777644333333333344555554478888888777776544444322222222344444444 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHCCC--CCCHHHHHHHHHHHHT....-SSHHHHHHHHHHHHHCCCC.CHHCCCC..C.HHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCC CS
   Adaptin_N  95 irglALrvLssirvpelaedlapaikkllk....drspyvrkkAalailklykk.dpdllrk..q.lveeikellsdkdpgvvlaAvalleei.kkndr 184
                   ++AL  +s+   p++  d+++ + k+++    ++++ v++ Aa a++   +  +++ l++  + l+ ++ +ll++++  v+  A++++  i +  + 
  CCE27566.1 429 AGCNALGQMSTDFAPKMQTDFYDRVLKAIVpvlnSPEARVKSHAAAALVNFCEEaQKSTLEPylDnLLAHLFQLLQSDKRYVQEQALSTIATIaDAAQA 527
                 44667777777778888877777666654332228888***********999875444444311226888888889999**************644444 PP

                 CCC....HHHHHHHCCHHH CS
   Adaptin_N 185 lll....kllpklvrrLcn 199
                 +++    +l+p+lv+ L+n
  CCE27566.1 528 AFSkyydTLMPLLVSVLQN 546
                 4446667888888887775 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       7.9   4.9e+03      36      63 ..      76     103 ..      58     108 .. 0.76
   2 !   13.4   0.0   9.9e-05     0.061       2      96 ..     114     215 ..     113     289 .. 0.76
   3 ?   -1.4   0.1       3.6   2.2e+03     111     140 ..     476     507 ..     447     527 .. 0.62
   4 ?   -1.4   0.2       3.5   2.2e+03     104     111 ..     511     518 ..     479     563 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.9
                 CT.HHHHHHHHHHHHHHHHHHHTSHTTT CS
        Xpo1  36 ssspsglelllriLkvlpeEiadfsrsk 63 
                 ++ ++ ++++l i+ +lp+E a + r+k
  CCE27566.1  76 KNRKTDTNNTLDIFYSLPKEQAIVIRQK 103
                 3347788999999999999988766665 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 9.9e-05
                 HHHHHHHHHHHHHHHHHHT..TTTSTTHHHHHHHHHCT..HHHHHHHHHHHHHHHHHHHT.SHTTTSCHHHHHHHHHHHHHH...HHHHHHHHHHHHHH CS
        Xpo1   2 kflrnklaealaelflqey..pnnWpsffddllsllss.spsglelllriLkvlpeEiad.fsrskleqerrndlkdllrsn...vqkilelllqileq 93 
                 + +rnk++ a+ae+++q+    + Wp+++  l++l+++ +  + e+ +r++k+ p  i +   ++ l++ ++  l +  +++   +++ ++++++i ++
  CCE27566.1 114 RTVRNKISDAVAEIARQYTdnNDLWPELLGVLFQLSQApDVGKRENAFRVFKTTPGIIEKqHEETVLQAFQKGFLDEDVTVRlaaMEAFASFFSTIGKK 212
                 579**************8877788**************6788899999999988877766333344444446666666666666566666666666555 PP

                 HHH CS
        Xpo1  94 sqs 96 
                 sq 
  CCE27566.1 213 SQP 215
                 555 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3.6
                 HHHHTTTS-HHHHHT..SCHHHHHHHHCCSCC CS
        Xpo1 111 lsswvswidiglivn..npllnllfqlLsdpe 140
                 l +++++ + +++    ++ll +lfqlL++++
  CCE27566.1 476 LVNFCEEAQKSTLEPylDNLLAHLFQLLQSDK 507
                 55555554444444323567777888885444 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 3.5
                 HHHHHHHH CS
        Xpo1 104 veavLkcl 111
                  e++L ++
  CCE27566.1 511 QEQALSTI 518
                 33333333 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.065        40      85     152 ..      80     147 ..       5     198 .. 0.66
   2 ?   -0.9   0.2       1.3   7.9e+02      67      96 ..     293     335 ..     244     358 .. 0.54
   3 ?   14.7   0.3   2.2e-05     0.014     104     213 ..     451     554 ..     433     642 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.065
  V-ATPase_H_N  85 sedksrvelflslakkeeqdpwkpflk.llnrqddfivllalrllakllvqgkkksnklvesaLnrllq 152
                   +++++  ++f sl k++   + + +l+ l +++d+ + ++++  +a +++q  +++     ++L  l+q
    CCE27566.1  80 TDTNNTLDIFYSLPKEQAIVIRQKLLEtLATETDRTVRNKISDAVAEIARQYTDNNDL-WPELLGVLFQ 147
                   344477888888777666669999999777777**************99876655443.3344444444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
  V-ATPase_H_N  67 l.............skedtlqyiLvlidDllsedksrvelfls 96 
                                   +d++ + L l+ Dl ++d++ +e ++s
    CCE27566.1 293 FadhapsmcrkdpsYTNDMITQCLSLMTDLGEDDDDASEWLAS 335
                   2222233333334445567777777777777777776666655 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 2.2e-05
  V-ATPase_H_N 104 d.pwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfve...adgvstli 196
                   d ++k ++ +ln++++ ++ +a+  l+++  +++k+  +     L++ll++L ++l+s+++   ++  ++l++++   +  +++++     ++++l+
    CCE27566.1 451 DrVLKAIVPVLNSPEARVKSHAAAALVNFCEEAQKSTLE---PYLDNLLAHLFQLLQSDKR---YVQEQALSTIATIADAAQAAFSkyyDTLMPLLV 541
                   357888888899999999999999999887777777777...8899999999999999888...566666666666666655555324355566666 PP

  V-ATPase_H_N 197 silrstvanstrvgiQl 213
                   s+l    +n+++   Ql
    CCE27566.1 542 SVL----QNQSEKEYQL 554
                   666....5555555554 PP

>> BP28CT  BP28CT (NUC211) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.03        19      53     125 ..     256     329 ..     241     363 .. 0.77
   2 ?    4.8   0.6     0.037        23      89     124 ..     518     553 ..     444     597 .. 0.80
   3 ?   -1.2   0.0       2.6   1.6e+03      90     154 ..     795     859 ..     790     863 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.03
                 --HHHHHHHHHHHH...HHTSTT-----HHHHHHHHHHHHH--------...TTHHHHHHHHHHHHH--------- CS
      BP28CT  53 atFrPlFlklveWaeeesselskkdskeRlitfykllnklaekLkslft...sYasyllenavelLkalneksees 125
                 ++F+ lF +lv+++  +  + +  ds+ R+ ++ +l++++a++  s+     sY + +++++++l++ l e ++++
  CCE27566.1 256 KMFKQLFQNLVQFSV-SVIQDKDLDSICRQNAL-ELMATFADHAPSMCRkdpSYTNDMITQCLSLMTDLGEDDDDA 329
                 68************5.34345566677888776.99*******999996444799999999999998885443333 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.037
                 HHHHH--------TTHHHHHHHHHHHHH-------- CS
      BP28CT  89 lnklaekLkslftsYasyllenavelLkalneksee 124
                 ++++a++ +  f++Y+ +l+  +v++L++ +ek+ +
  CCE27566.1 518 IATIADAAQAAFSKYYDTLMPLLVSVLQNQSEKEYQ 553
                 677889999999999999999999999777655443 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.6
                 HHHH--------TTHHHHHHHHHHHHH---------HH...........HHHHHHHHHHHHHHHH CS
      BP28CT  90 nklaekLkslftsYasyllenavelLkalnekseeskekkkkkeekkveLlrlvlstLtkcflhD 154
                 n + ++ +s +  Y    ++ a     a+++  e+++e+ +++ e++ +Ll+ + ++ +++f++ 
  CCE27566.1 795 NGFIDSVRSTIDEYRHRAVQRAEYKAAATADDVEDEAEELQREIEEDQTLLSDMNKAFHSIFKNH 859
                 66666667777777776666666666566555555555566778888899999999999999875 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.37   2.3e+02      36     110 ..     176     253 ..     165     323 .. 0.77
   2 ?    6.4   0.3     0.014       8.5      47     136 ..     461     547 ..     444     568 .. 0.78
   3 ?    3.0   0.0      0.16        97      75     136 ..     579     637 ..     533     653 .. 0.68
   4 ?   -1.0   0.0       2.7   1.7e+03     102     128 ..     680     706 ..     661     711 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.37
       ParcG  36 ydalLplffdGlretkhpyrflategikdllea...ageekilpvlpklilplkeaLntrdeeviesaLkvlqklvka 110
                  +++L  f  G  +++   r+ a e++  + ++   +++ k  p++p +   l     ++d++ + +aL +l  l ++
  CCE27566.1 176 EETVLQAFQKGFLDEDVTVRLAAMEAFASFFSTigkKSQPKYYPLIPDILNILPPIKISHDSDDLSKALLALIDLAET 253
                 4679999*******************9999988887899999999998654333333344444444555555455444 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.014
       ParcG  47 lretkhpyrflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvlnlfknkr 136
                 l   +   +  a  ++ ++ e+a+++ + p l +l   l + L++ ++ v e+aL+++  +    +   +a   yy +l+p l  + +++
  CCE27566.1 461 LNSPEARVKSHAAAALVNFCEEAQKSTLEPYLDNLLAHLFQLLQSDKRYVQEQALSTIATI---ADAAQAAFSKYYDTLMPLLVSVLQNQ 547
                 55555555666777778888887888888999999999******************99998...8999999999*****99998665554 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.16
       ParcG  75 lpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvlnlfknkr 136
                 + +l kl   ++++++  d+   +  +++  ++    +++g+  vp++ +++p+l  + + +
  CCE27566.1 579 TVTLVKLLANIQANITDADDPQAQYLMHCWGRM---CRVMGTDFVPFLENVMPPLLELAAAK 637
                 4578899999**********999******9999...8999*************998776655 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.7
       ParcG 102 kvlqklvkaseligeaLvpyyrqlLpv 128
                  +++ lv+ s++  +a  py  +++  
  CCE27566.1 680 MAIELLVVYSQVLEAAFAPYVANIMEK 706
                 46788999*************999876 PP

>> Telomere_reg-2  Telomere length regulation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       7.9   4.9e+03       8      55 ..     105     151 ..     102     178 .. 0.64
   2 ?    0.8   0.1       1.1   6.6e+02      15      59 ..     235     279 ..     220     318 .. 0.61
   3 ?   13.4   0.9   0.00013     0.082       3      69 ..     491     560 ..     490     572 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 7.9
  Telomere_reg-2   8 lelLrdkddyekieaaLksaeeLirrkadeveenaveLataLltledk 55 
                     le L ++ d+   ++  ++++e+ r+ +d  ++++ eL+ +L +l++ 
      CCE27566.1 105 LETLATETDRTVRNKISDAVAEIARQYTD-NNDLWPELLGVLFQLSQA 151
                     55566444433333333444444444444.478888888888888765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 1.1
  Telomere_reg-2  15 ddyekieaaLksaeeLirrkadeveenaveLataLltledkfdie 59 
                     +d + + +aL ++  L + +++ ++++ ++L++  +++ +  d++
      CCE27566.1 235 HDSDDLSKALLALIDLAETAPKMFKQLFQNLVQFSVSVIQDKDLD 279
                     455666677777777777777766666666666555443222333 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 0.00013
  Telomere_reg-2   3 YlkdllelLr...dkddyekieaaLksaeeLirrkadeveenaveLataLltledkfdienfeelrlnal 69 
                     Yl  ll+ L+   ++d++  +e+aL++++++  +++++++++   L+  L+++ ++ ++++++ lr +a+
      CCE27566.1 491 YLDNLLAHLFqllQSDKRYVQEQALSTIATIADAAQAAFSKYYDTLMPLLVSVLQNQSEKEYQLLRGKAM 560
                     7888888888887899999*********************************98888*********9998 PP

>> Nitrate_red_del  Nitrate reductase delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1      0.07        43      60      90 ..       4      34 ..       2      36 .. 0.92
   2 ?    2.1   0.1       0.3   1.8e+02       4      49 ..     823     868 ..     820     871 .. 0.84
   3 ?    6.0   0.1     0.018        11       8      54 ..     974    1023 ..     968    1028 .] 0.86

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.07
  Nitrate_red_del 60 lfgestlevrefyrqaglevaeefneppDHl 90
                     l  e+++e+++++++++ + + + ++++DHl
       CCE27566.1  4 LSAEAHAELTQLLQALQSANNVTRSQAEDHL 34
                     67799*************************9 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.3
  Nitrate_red_del   4 lsaeveealaelaealaa.ededllelaaeYtrLFlgpgrrsasPye 49 
                       +++ve +++el++ + + +++ l+++ + + + F + g   ++ +e
       CCE27566.1 823 TADDVEDEAEELQREI-EeDQTLLSDMNKAFHSIFKNHGSAFLPAWE 868
                      57889999999*****.559999************987877777776 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.018
  Nitrate_red_del    8 veealaelaeal..aa.ededllelaaeYtrLFlgpgrrsasPyesvYls 54  
                        e a+a++a+ l  +a + +d ++l a+++++  + +  +a+Py+ +Yl+
       CCE27566.1  974 TENACAAIAKILhyNAvSIADPQALIAQWVDTLPVVHDEEAAPYAYAYLA 1023
                       56677788888887668999*****************************8 PP

>> MIF4G_like_2  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.5   9.5e+02     189     230 ..     234     275 ..     170     292 .. 0.75
   2 ?   -3.2   0.1       7.6   4.7e+03     189     227 ..     509     547 ..     468     553 .. 0.61
   3 ?    9.8   0.0   0.00081       0.5     149     227 ..     797     859 ..     788     889 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.5
  MIF4G_like_2 189 keeeeeleraeekleaaqkeqkelflivferlveilseslee 230
                   + ++++l++a  +l ++ +   ++f+ +f+ lv+   +++++
    CCE27566.1 234 SHDSDDLSKALLALIDLAETAPKMFKQLFQNLVQFSVSVIQD 275
                   567788999999999999999999999999999987777544 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.6
  MIF4G_like_2 189 keeeeeleraeekleaaqkeqkelflivferlveilses 227
                     +e++l+++    +aaq+++ + + +++  lv++l++ 
    CCE27566.1 509 YVQEQALSTIATIADAAQAAFSKYYDTLMPLLVSVLQNQ 547
                   445566666666666666666666666666666666655 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00081
  MIF4G_like_2 149 vwEllkrtlskvnkrvkkvrqeleelkkkeeeekakeeedkeeeeeleraeekleaaqkeqkelflivferlveilses 227
                    ++++++t+++   r   + q+              e + +++ +++e+  e+l+++ +e++ l++ +++++ +i +++
    CCE27566.1 797 FIDSVRSTIDEYRHR---AVQRA-------------EYKAAATADDVEDEAEELQREIEEDQTLLSDMNKAFHSIFKNH 859
                   356666666666666...22222.............1111456677777788888888888888888888888877777 PP

>> TFCD_C  Tubulin folding cofactor D C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       8.5   5.2e+03     105     144 ..     103     139 ..      98     151 .. 0.70
   2 ?   -1.5   0.1         3   1.9e+03     103     132 ..     241     268 ..     235     277 .. 0.75
   3 ?   -2.4   0.0       5.8   3.6e+03     124     161 ..     348     385 ..     333     403 .. 0.76
   4 ?    9.1   0.0    0.0018       1.1      79     137 ..     449     507 ..     409     549 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.5
      TFCD_C 105 aLleylkeleskadeeeleslleeliklleenkkddRvvv 144
                  Lle l    +++d +  +++++ + ++++++++++ +  
  CCE27566.1 103 KLLETL---ATETDRTVRNKISDAVAEIARQYTDNNDLWP 139
                 555555...4467888888999999999999998886655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3
      TFCD_C 103 sqaLleylkeleskadeeeleslleelikl 132
                 s+aLl++++    ++ ++++++l+++l++ 
  CCE27566.1 241 SKALLALIDLA--ETAPKMFKQLFQNLVQF 268
                 67777777333..46999999999999986 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 5.8
      TFCD_C 124 slleeliklleenkkddRvvvPllktldlLlesgvlee 161
                    e+ ++ l+++++ + ++ P+++ l +++ s ++++
  CCE27566.1 348 VAGEQTMDRLANKLGGQTILAPTFNWLPRMMTSMAWRD 385
                 34567788899999999999999999999999887765 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0018
      TFCD_C  79 yresvleGlvvSvGglteslvkassqaLleylkeleskadeeeleslleeliklleenk 137
                 + + vl+ +v    +    +  ++++aL+++++e ++++ e  l++ll  l++ll++ k
  CCE27566.1 449 FYDRVLKAIVPVLNSPEARVKSHAAAALVNFCEEAQKSTLEPYLDNLLAHLFQLLQSDK 507
                 677788888888888889999***********999888888889999999999987654 PP

>> Dopey_N  Dopey, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.7      0.45   2.8e+02     248     258 ..     194     204 ..       8     321 .. 0.65
   2 ?    7.7   0.0    0.0027       1.7      99     178 ..     455     537 ..     448     613 .. 0.86
   3 ?   -3.0   0.0       4.9     3e+03      97     170 ..     708     786 ..     684     851 .. 0.58

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.45
     Dopey_N 248 vqRgiLDlLls 258
                 v+  +++ + s
  CCE27566.1 194 VRLAAMEAFAS 204
                 33222222222 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0027
     Dopey_N  99 pGLlpllsyaslsvkpqlleliekyllpLg.ekLrpalkglilslLpGLeeensevfertlklleklkekvge..kyfyqclw 178
                  +++p+l+    +vk++    + ++  + + ++L+p l  l++ l+  L+ ++  v+e++l+++ ++ ++ +   + +y +l 
  CCE27566.1 455 KAIVPVLNSPEARVKSHAAAALVNFCEEAQkSTLEPYLDNLLAHLFQLLQSDKRYVQEQALSTIATIADAAQAafSKYYDTLM 537
                 5789999999999*****9999999999999*************************************999987745555544 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.9
     Dopey_N  97 ylpGLlplls....yaslsvkpqlleliekyllpLgekLrpalkglilslLpGLee.ensevfertlklleklkekvge 170
                  lpGL+ +++    y s ++ pqll  ++k +   +++L+ +  + +  lL  L    + e + ++++++ +  e vg+
  CCE27566.1 708 ALPGLTFFFHdpvrYISAKLVPQLLGSYRKAYGCPSNELAGLWTATVGKLLEVLSAePSIETLAEMYQCFYESVEVVGK 786
                 5566666653222266777777777777777766667777777777777777776413445555555555555555555 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.5       8.3   5.1e+03     150     162 ..      10      22 ..       4      39 .. 0.32
   2 ?   -3.1   0.1       9.7     6e+03     147     161 ..     115     129 ..     101     135 .. 0.36
   3 ?    6.5   0.2     0.011       6.9     112     162 ..     481     531 ..     447     558 .. 0.74
   4 ?    9.2   0.2    0.0017         1     112     161 ..     798     847 ..     768     858 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.3
                     --SSSHHHHHHHT CS
  Apolipoprotein 150 erlssrveelrek 162
                     ++l++ +++l+ +
      CCE27566.1  10 AELTQLLQALQSA 22 
                     2222222222222 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.7
                     -----SSSHHHHHHH CS
  Apolipoprotein 147 eveerlssrveelre 161
                      v++++s+ v e+ +
      CCE27566.1 115 TVRNKISDAVAEIAR 129
                     233333333333333 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.011
                     HHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHT CS
  Apolipoprotein 112 vealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrek 162
                      ea+k++l+py+++l + l + l+  k+ ++++a +  +++++ ++++  k
      CCE27566.1 481 EEAQKSTLEPYLDNLLAHLFQLLQSDKRYVQEQALSTIATIADAAQAAFSK 531
                     578888888888888888888888888888888666666666666655544 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0017
                     HHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHH CS
  Apolipoprotein 112 vealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelre 161
                     ++++++++++y+ +++q+ + ++ +  + ++++aee++ ++++  + l++
      CCE27566.1 798 IDSVRSTIDEYRHRAVQRAEYKAAATADDVEDEAEELQREIEEDQTLLSD 847
                     78999999999999999999999999999999999999888887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1110  (0.0619109); expected 358.6 (0.02)
Passed bias filter:                      848  (0.0472977); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.55
# Mc/sec: 5638.32
//
Query:       CCE27567.1  [L=1938]
Description: probable 1,3-beta-D-glucan synthase subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
          0 1367.7   0.0          0 1366.9   0.0    1.4  1  Glucan_synthase  1,3-beta-glucan synthase component
    3.3e-43  147.1   1.3    1.3e-42  145.2   1.3    2.1  1  FKS1_dom1        1,3-beta-glucan synthase subunit FKS1, domai


Domain annotation for each model (and alignments):
>> Glucan_synthase  1,3-beta-glucan synthase component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1366.9   0.0         0         0       1     818 [.     856    1681 ..     856    1682 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1366.9 bits;  conditional E-value: 0
  Glucan_synthase    1 ffpknseaerRisfFaqslstplpealkvekmptFtvLiPhysEkillslkeiikeeekksrvtlleYLkqlypkeWknFvkdtkllaeeke 92  
                       ffp++seaerRisfFaqslstp+pe+l+v++mptFtv+iPhysE+illsl+eii+e+e +srvtlleYLkql+p+eW++Fvkdtk+la+e++
       CCE27567.1  856 FFPSQSEAERRISFFAQSLSTPIPEPLPVDNMPTFTVMIPHYSERILLSLREIIREDEPYSRVTLLEYLKQLHPHEWDCFVKDTKILADETA 947 
                       79****************************************************************************************** PP

  Glucan_synthase   93 eekeeeekkeeellkekiedlpfyliGfkssepeytlrtriWaslrsqtLyrtvsGfmnYskalkllyrvenaslvellseesekleeelee 184 
                       + + e ek+e++++k+ki+dlpfy+iGfkss+peytlrtriW+slrsqtLyrt+sGfmnYs+a+kllyrven+++v++++ +s+kle+ele+
       CCE27567.1  948 QMNGEPEKNEKDTAKSKIDDLPFYCIGFKSSAPEYTLRTRIWSSLRSQTLYRTISGFMNYSRAIKLLYRVENPEVVQMFGGNSDKLERELER 1039
                       ******************************************************************************************** PP

  Glucan_synthase  185 laerKfklvvamqryakfkkeekenaelllkaypelkiayldeeaee.eeeekeyysvLidgsseideengkrkekyrirLsGnpilGdGKs 275 
                       +a+rKfk+vv+mqry+kf+kee+enae+ll+ayp+l+iayldee++  e ee+++ys+Lidg+sei+ eng r++k+ri+LsGnp+lGdGKs
       CCE27567.1 1040 MARRKFKIVVSMQRYSKFNKEEMENAEFLLRAYPDLQIAYLDEEPPLaEGEEPRLYSALIDGHSEIM-ENGMRRPKFRIQLSGNPVLGDGKS 1130
                       *******************************************87766999**************99.************************ PP

  Glucan_synthase  276 dnqnhaiiftRGeyiqviDanqdnyleEclKirsvLaefeeleleskkpyaeeiekeeekepvailGaREyiFsenigvLgdiaagkEqtFg 367 
                       dnqnh++if+RGeyiq+iDanqdnyleEclKirsvLaefee+++++ +py++++ k+e ++pvailGaREyiFsenig+Lgd+aagkEqtFg
       CCE27567.1 1131 DNQNHSLIFYRGEYIQLIDANQDNYLEECLKIRSVLAEFEEMKTDNVSPYTPGV-KNEIRTPVAILGAREYIFSENIGILGDVAAGKEQTFG 1221
                       ****************************************************99.678899******************************* PP

  Glucan_synthase  368 tlfaRtlaeiggklHYGHPDflnaifmttRGGvsKaqkglhlnEDiyaGmnallRgGrikHseYiqcGKGRDlGfgsilnFttKigaGmgEq 459 
                       tlfaRtla+iggklHYGHPDfln+ifmttRGGvsKaqkglhlnEDi+aGm+a+lRgGrikH+eY+qcGKGRDlGfgsilnFttKig+GmgEq
       CCE27567.1 1222 TLFARTLAQIGGKLHYGHPDFLNGIFMTTRGGVSKAQKGLHLNEDIFAGMTAILRGGRIKHCEYYQCGKGRDLGFGSILNFTTKIGTGMGEQ 1313
                       ******************************************************************************************** PP

  Glucan_synthase  460 lLsReyyylgtqlpldRfLsfyyahvGfhlnnllivlsvqlflllllnlgalekesiiceydkskkitdlekplgCynlkpvlewvkivvls 551 
                       +LsReyyylgtqlpldRfLsfyyah+Gfh+nn++i+lsvqlf+l+lln+ga+++e++ c+y+ +k+ td+  p+gC+n ++v++wv++ ++s
       CCE27567.1 1314 MLSREYYYLGTQLPLDRFLSFYYAHPGFHVNNMFIMLSVQLFMLCLLNFGAFKHETVSCDYNPDKPPTDPLYPTGCANTDAVMQWVQRSIFS 1405
                       ******************************************************************************************** PP

  Glucan_synthase  552 ifivffisflPllvqellergvlkavsrllkhllslsplfevfvcqiyaksllkdllfGgAkYiatGRgfavtrisfaelysrfasssiykg 643 
                       if vff+sf+Pllvqel+ergv++a++r+lk+++sls +fevfvcqiya+s+++dl+fGgA+Yi+tGRgfa++ri+f +lysrfa  siy+g
       CCE27567.1 1406 IFFVFFLSFVPLLVQELTERGVWRALVRFLKQFFSLSLFFEVFVCQIYANSVQQDLSFGGARYIGTGRGFATARIPFGVLYSRFAGPSIYFG 1497
                       ******************************************************************************************** PP

  Glucan_synthase  644 iellllllfatvtvwqaallyfwitvvslilaPflfnPhqfslldffvDyrdflrWlsrgnskskeesWisyvrqsrlritglkkkvlgees 735 
                       ++ll++llfatvt wqaal yfwit+++l ++Pfl+nPhqf+++dff+DyrdflrWlsrgns+s+ +sWi ++r sr+r+tg+k+k+lg+ s
       CCE27567.1 1498 ARLLMILLFATVTAWQAALTYFWITLLGLTISPFLYNPHQFAWNDFFIDYRDFLRWLSRGNSRSHGQSWIAFCRLSRTRTTGYKRKALGDAS 1589
                       ******************************************************************************************** PP

  Glucan_synthase  736 ekeskdvkrasllnlllseiilellvvlllliaylfinsqtgv.........keaeatnsvlrlaivsllpillnvvvllvlfalslllgpl 818 
                        k s dv ra+++n+++sei+ +ll+v+ ++i+ylfin+qtgv         k a +t++++r+ ++sl+pi +n+ vl+++f +++++gp+
       CCE27567.1 1590 AKLSADVPRAAIANIFFSEILSPLLQVVWTIIPYLFINAQTGVnqdnnsdnkKYAVPTSALVRVLVISLAPIGVNAGVLAAMFGMACCMGPV 1681
                       *******************************************88888766555667899*****************************987 PP

>> FKS1_dom1  1,3-beta-glucan synthase subunit FKS1, domain-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   1.3   1.4e-46   1.3e-42       2     128 ..     345     452 ..     344     453 .. 0.96

  Alignments for each domain:
  == domain 1  score: 145.2 bits;  conditional E-value: 1.4e-46
   FKS1_dom1   2 kvlqiaLylliWGEaanvRflpeclcyifkcaadyleseeakeeeeelkeleeileekvseaaaseeeesfLkkvitPlyevlrkqeaeknkegkyvrr 100
                 +v+qiaLyll+WGEa++vRf+peclc+ifkca dyl+s ++++  e +                  +e ++L++vitPly+++r+q +e+  +g yvrr
  CCE27567.1 345 RVRQIALYLLCWGEANQVRFMPECLCFIFKCADDYLNSPACQALVEPV------------------DEFTYLNNVITPLYQYVRDQGYEI-LNGVYVRR 424
                 799***********************************9999888888..................99**********************.9999**** PP

   FKS1_dom1 101 ekdHskiigYDDlNelFWskegieklkl 128
                 e+dH++iigYDD+N+lFW++egie++++
  CCE27567.1 425 ERDHKHIIGYDDCNQLFWYPEGIERIVM 452
                 **************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1938 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.51
# Mc/sec: 11529.08
//
Query:       CCE27568.1  [L=915]
Description: related to LCB1-serine C-palmitoyltransferase subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-38  131.2   0.0      7e-38  130.7   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
    4.7e-08   33.0   0.2    1.6e-07   31.2   0.1    1.8  2  Glyco_hydro_17   Glycosyl hydrolases family 17
     0.0011   17.6   0.0     0.0022   16.6   0.0    1.4  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   0.0   1.2e-41     7e-38       2     359 ..     124     495 ..     123     499 .. 0.86

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 1.2e-41
                    EEEESSSSSTTSTTSSHHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgde 95 
                     v+nL+s ++   +++++++e a ++ +  g++ +g+  +yg++d++ ++e+++a+flg         ea +v+++ ++ + +++++++k  +gd+
     CCE27568.1 124 TVTNLASYNFYNFNSNEQIKEKAIQTLRtyGVGPCGPPQFYGTQDVHVKAETDIADFLG--------SEACIVYTQAFSTVSSVIPAFCK--RGDA 209
                    689****9999999997777755555557******************************........9999******************9..**** PP

                    EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTE.....TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEE CS
  Aminotran_1_2  96 ilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnk.....ktkvilvesphNPtGtvatleeleklldlakkynlllfv 186
                    i+v++    s+ ++l++s++ +  ++       h d+++le+  k+ + ++       +++i++e+ +  +G++ +l+ l++l   ++ky++++++
     CCE27568.1 210 IIVDEAANYSIRKGLQASRSNIKWFK-------HGDMDDLERVMKSVAVEQSkgkklTRRFIVTEGLFETCGDITDLPRLVEL---KEKYKFRIIL 295
                    **************************.......************9765555799999*************************...********** PP

                    EETTTTCBSSSSHTHHH.HGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 187 DeaYagfvfgsldavat.ranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrl 281
                    De+ + +v+g ++   t   nv++   ++ivgsls  + + G   G+++g ++vv+++r+ s+++++s++l+a++a  +s +    +++ e   + 
     CCE27568.1 296 DETWSFGVLGRTGRGLTeAQNVDPQQVDMIVGSLSGPLCAGG---GFCAGAKDVVEHQRITSSAYTYSAALPAMLAMTASETVNLLQSNPEILTQC 388
                    **********774333379******99***************...******************************99999999999999******* PP

                    HHHHHHHHHHHHHS..TEEEECCSCSSEEEEEETHH..........CHHHHHHH...........HHHTCTEEEEEGGGGTS.............T CS
  Aminotran_1_2 282 qkrrkelrdeLael..glkvlasqsgmflltdlsae..........takelskk...........Lleevgvyvtpgtsftv.............p 341
                     ++ k +r++L+     +++++ + + ++l  l++e          +      +           Ll++  v++t+ +   +             +
     CCE27568.1 389 RENIKAMRSQLDPRsdWVICTSAPENPIMLLALKPEiiamrklgldD------QerillecvdecLLNN--VLITKLKTRPYshtiaardskwfaQ 476
                    ***********76695567777789999999***9988665555441......1445555566666665..5554443333335667778778886 PP

                    TEEEEEC.TTS-HHHHHHH CS
  Aminotran_1_2 342 grlRitv.Aglteeeleel 359
                      l++++ +gl+++++e++
     CCE27568.1 477 PALKVCItSGLSKKDIEKA 495
                    6799999889988888876 PP

>> Glyco_hydro_17  Glycosyl hydrolases family 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.91   5.4e+03      38      95 ..     373     425 ..     362     431 .. 0.69
   2 !   31.2   0.1   2.7e-11   1.6e-07     232     300 ..     837     906 ..     820     908 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.91
  Glyco_hydro_17  38 evlkalaasnlevilnlpnsdlaelesnqskaavWvqdnvrpaaekvkikyiavgnei 95 
                     e++++l +sn e++ +   ++++++ s+   ++ Wv   + p+     i ++a  +ei
      CCE27568.1 373 ETVNLL-QSNPEILTQCR-ENIKAMRSQLDPRSDWVICTSAPEN---PIMLLALKPEI 425
                     445544.68888888887.8999999999999999865544443...34566666666 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 2.7e-11
  Glyco_hydro_17 232 elvvsEtGWPsdGstgaslenaatyveNlikkvkeGtpskpgkgietyvfalFdEnqKpees....vekhfGv 300
                     ++vv EtGWP++G+   s + a++++eN +  ++    + +g +  +++f++F++ +K++e      ++ +G+
      CCE27568.1 837 KIVVTETGWPTKGA---SNGVAVPSLENQKTALQSIEEQFRGSPESIILFSAFNDLWKKKEMetfnADQFWGI 906
                     79***********9...6689**************99*********************999777778889987 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.7e-07    0.0022      58     181 ..     174     304 ..     166     307 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.7e-07
                      HHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCT........TEEEEEE CS
  Cys_Met_Meta_PP  58 eeriaaLeggeaalavssGmaAiaaailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaike........ntklvyl 143
                      e  ia+  g+ea+++++   ++++++i a++k Gd i+v++ +  + ++ l+   ++++  +k+ d++dle++ k +            + + +
       CCE27568.1 174 ETDIADFLGSEACIVYTQAFSTVSSVIPAFCKRGDAIIVDEAANYSIRKGLQASRSNIK-WFKHGDMDDLERVMKSVAVeqskgkklTRRFIVT 266
                      8899************************************9886666666655444432.3577777777777766543333333323457899 PP

                      ESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTT CS
  Cys_Met_Meta_PP 144 EtptnpllkvvDiekiaklakkagvlvvvDntfaspll 181
                      E +     +++D++++++l  k +  +++D t++ ++l
       CCE27568.1 267 EGLFETCGDITDLPRLVELKEKYKFRIILDETWSFGVL 304
                      *********************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 6216.09
//
Query:       CCE27569.1  [L=555]
Description: related to CBS-domain protein Sds23p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-15   56.5   6.0    0.00021   21.7   0.1    5.3  5  CBS       CBS domain


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.1    0.0028        50       8      42 ..     188     223 ..     180     224 .. 0.70
   2 !   18.1   0.0   1.5e-07    0.0026       8      50 ..     280     321 ..     271     328 .. 0.86
   3 !   21.7   0.1   1.2e-08   0.00021       5      52 ..     350     397 ..     344     399 .. 0.87
   4 !    5.4   0.0    0.0014        25       8      36 ..     433     461 ..     429     467 .. 0.90
   5 !    5.4   0.0    0.0014        25      39      54 ..     498     513 ..     497     516 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0028
                 SCEEEETTSBHHHHHHH.HHHHTSSEEEE.E..ETTTBE CS
         CBS   8 dvvtvppdttleealel.mrekgvsrlPV.V..dedgkl 42 
                 dv  v+ d+++e+a ++ +  k+++ + V V  ++++++
  CCE27569.1 188 DVKWVDMDSSVEDATKIlL--KACTNV-VlVhdNSSDRV 223
                 77899************55..667788.53665555555 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.5e-07
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHH CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrD 50 
                 ++v vp + +l++a+e++  +g++rl+V d+ g +vGi ++  
  CCE27569.1 280 PLVEVPSTGNLSQAIEIL-GSGIHRLLVSDSAGDVVGIMSQLR 321
                 7788999999********.999****888*********98755 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 1.2e-08
                 SBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTT.BEEEEEEHHHHH CS
         CBS   5 mtrdvvtvppdttleealelmrekgvsrlPVVdedg.klvGivtlrDll 52 
                  tr ++++  d++l+ al lm ++g++++ VVd +g ++vG ++ +D+ 
  CCE27569.1 350 STRSIISIISDAPLSSALALMNDEGLTSIAVVD-SGqNVVGNISTKDVR 397
                 68899****************999999*****6.6658********996 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0014
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEE CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVV 36 
                 ++++v+p +tl+ ++ +++ ++ +r+ VV
  CCE27569.1 433 PIFYVTPLSTLAHVVGKLTATRSHRMWVV 461
                 7889**************999999****9 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.0014
                 TTBEEEEEEHHHHHHH CS
         CBS  39 dgklvGivtlrDllra 54 
                 +gkl G+++l+D+l+ 
  CCE27569.1 498 SGKLSGVISLTDVLNI 513
                 699**********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4039.91
//
Query:       CCE27570.1  [L=197]
Description: uncharacterized protein CPUR_01044 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-26   90.7   1.6    5.4e-26   90.1   1.6    1.3  1  DASH_Dam1  DASH complex subunit Dam1


Domain annotation for each model (and alignments):
>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   1.6     3e-30   5.4e-26       2      56 .]      53     107 ..      52     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 3e-30
   DASH_Dam1   2 epafaeLaDsletLdknledLqqihesLsdfNeSFasfLYGLnmnafcvdFpeaP 56 
                 epaf eL+D l++L++n++++q +hesLs+f+eSFasfLYGLnmnafc dFpe P
  CCE27570.1  53 EPAFTELSDGLADLEANMMHFQLMHESLSRFSESFASFLYGLNMNAFCADFPEGP 107
                 89***************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1452.42
//
Query:       CCE27571.1  [L=120]
Description: uncharacterized protein CPUR_01045 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-10   41.3   0.6    1.3e-10   41.3   0.6    2.2  3  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
      0.012   15.9   0.3       0.03   14.7   0.3    1.7  1  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
      0.013   15.9   0.1      0.026   14.9   0.1    1.6  1  zf-met       Zinc-finger of C2H2 type
       0.04   14.8   1.2       0.16   12.9   0.1    2.4  3  zf-C2H2_4    C2H2-type zinc finger
      0.073   13.0   0.2       0.14   12.1   0.2    1.5  1  zf-LYAR      LYAR-type C2HC zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.2     8e+03       6      10 ..      27      31 ..      26      32 .. 0.80
   2 !   41.3   0.6   3.6e-14   1.3e-10       1      27 []      49      75 ..      49      75 .. 0.97
   3 ?   -1.2   0.1      0.77   2.8e+03      12      21 ..     107     116 ..     106     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.2
                 TTTBB CS
  zf-C2H2_jaz  6 lCdKy 10
                 lC+++
   CCE27571.1 27 LCARH 31
                 89997 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 3.6e-14
                 ECBBTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz  1 qfYCvlCdKyFksenaldnHlkSKkHK 27
                 q YC++C+K+F +e +l++H+++K+HK
   CCE27571.1 49 QNYCIECAKWFDTETTLKAHKRGKPHK 75
                 78************************9 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.77
                  SSHHHHHCCT CS
  zf-C2H2_jaz  12 ksenaldnHl 21 
                   +++a  +H+
   CCE27571.1 107 DTQSAHVAHM 116
                  5899999997 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.3   8.2e-06      0.03      50      85 ..      49      84 ..      30      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.2e-06
   zf-C2H2_2 50 kleClyCekefkslealreHmkkkgHckineeeeee 85
                ++ C+ C k f++  +l++H + k H++ +++ +ee
  CCE27571.1 49 QNYCIECAKWFDTETTLKAHKRGKPHKRRAKQLREE 84
                589*************************98766554 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   7.1e-06     0.026       2      25 .]      51      74 ..      51      74 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.1e-06
      zf-met  2 yCelCnvtfnsesqlksHlqGKkH 25
                yC  C + f  e++lk+H +GK H
  CCE27571.1 51 YCIECAKWFDTETTLKAHKRGKPH 74
                788899****************99 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         5   1.8e+04      18      21 ..      30      33 ..      27      36 .. 0.63
   2 ?   12.9   0.1   4.4e-05      0.16       2      21 ..      51      70 ..      50      72 .. 0.92
   3 ?   -0.2   0.0      0.71   2.6e+03       8      21 ..     104     117 ..     103     119 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5
   zf-C2H2_4 18 rHlk 21
                rHl+
  CCE27571.1 30 RHLE 33
                5665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.4e-05
   zf-C2H2_4  2 kCpiCgksFsskkaLlrHlk 21
                +C  C k+F + ++L+ H +
  CCE27571.1 51 YCIECAKWFDTETTLKAHKR 70
                6*****************76 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.71
   zf-C2H2_4   8 ksFsskkaLlrHlk 21 
                 + + +++a   H++
  CCE27571.1 104 QCYDTQSAHVAHME 117
                 56778888788886 PP

>> zf-LYAR  LYAR-type C2HC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   3.9e-05      0.14       3      19 ..      52      69 ..      51      70 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.9e-05
     zf-LYAR  3 CiDCsktFdg.deykaHt 19
                Ci C k Fd+ ++ kaH+
  CCE27571.1 52 CIECAKWFDTeTTLKAHK 69
                **********99999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 964.86
//
Query:       CCE27572.1  [L=787]
Description: probable aconitase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.4e-147  492.5   0.0   1.7e-147  492.1   0.0    1.1  1  Aconitase    Aconitase family (aconitate hydratase)
    4.3e-43  146.8   0.0    7.2e-43  146.1   0.0    1.4  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  492.1   0.0  1.9e-151  1.7e-147       1     461 []      74     510 ..      74     510 .. 0.94

  Alignments for each domain:
  == domain 1  score: 492.1 bits;  conditional E-value: 1.9e-151
   Aconitase   1 ekiwdahlvee......egiayv...pdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefL 90 
                 eki+++hl +       +g++y+   pdrv++qd+t+++a+ ++++a+ a             + p+++++dh+++a+ + ek+l+++++ nke+y+fL
  CCE27572.1  74 EKILYSHLDDPhgqdieRGKSYLklrPDRVACQDATAQMAILQFMSAGMAQ-----------VANPTTVHCDHLIEAQVGGEKDLARAININKEVYDFL 161
                 79999999933344455557777888***********************99...........999********************************** PP

   Aconitase  91 ksaakafgirvvppgqGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavi 189
                 +sa+++++i ++ pg+GI+Hq+ lE+ +a+pg +++gtDSHT+++gglG+ aiGvGg++a++v+++ p+elk+pkv+gvkltG+l+ ++t+kD++l+v+
  CCE27572.1 162 SSACAKYNIGFWRPGSGIIHQIILEN-YAFPGGLLIGTDSHTPNAGGLGMCAIGVGGADAVDVMANLPWELKAPKVIGVKLTGQLSGWTTPKDIILKVA 259
                 **************************.************************************************************************ PP

   Aconitase 190 gklrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaavlveaydkaqalfelaadedaeydkvleldlstle 288
                 ++l++kg++g++vE++G+g++s s +++ +iaNM+aE+GAtt++fp+++++++YL at+r++      ++++  a  el+ad++aeyd+ +eldls+le
  CCE27572.1 260 DILTVKGGTGAIVEYYGPGLDSVSTTGQSSIANMGAEIGATTSVFPFNDRMYDYLVATRRKDIG----DFARSYA-TELRADQGAEYDQLIELDLSELE 353
                 ********************************************************99997666....4444333.3799******************* PP

   Aconitase 289 psvagpkrPqdavplselvkkefkeelekeaaekaleyklkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgvktsvaPGSevv 387
                 p+++gp++P+  +p+s++      +++            +++g++ +   +++++igSCTNss+ed+++aa++++ a ++g k+k+   ++v+PGSe++
  CCE27572.1 354 PHINGPFTPDLGTPISKFS-----QAV------------KDNGWPED---LKVGLIGSCTNSSYEDMSRAASIARDALDHGIKAKS--AFTVTPGSEQI 430
                 ***************6655.....455............6789**99...*******************************99999..*********** PP

   Aconitase 388 kayleaeGlleiLekaGfevvgagCstCignsdrle....egeaivsssNRNFegRq..gpntrayLaSPelvvaaAlaG 461
                 +a++e++G l+++e+ G  v++++C++Cig++dr +    e ++i+ss+NRNF gR+  +p t+ +++SP lvva  +aG
  CCE27572.1 431 RATIERDGQLKTFEEFGGVVLANACGPCIGQWDRQDvkkgEANSILSSYNRNFTGRNdgNPATHSFVTSPDLVVALTIAG 510
                 **********************************877655555**************76699999*************98 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   0.0     8e-47   7.2e-43       1     130 [.     589     718 ..     589     719 .. 0.98

  Alignments for each domain:
  == domain 1  score: 146.1 bits;  conditional E-value: 8e-47
                  CCCCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHH CS
  Aconitase_C   1 mekllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalr 98 
                  m++l+k+kG+tt+d++s+++++lk++++++++++n+ +g+++  + +ank ++  +g+  +v+  a++ykk+g+k+vvi++ n+GeGSSRehAA+++r
   CCE27572.1 589 MPILIKAKGKTTTDHISMAGPWLKYRGHLDNISNNMLIGAINEANNEANKIKNITTGDWDAVPAVARDYKKKGIKWVVIGDWNYGEGSSREHAALEPR 686
                  7899********************************************************************************************** PP

                  HTTEEEEEES-B-HHHHHHHHHTT-EEEEEST CS
  Aconitase_C  99 llGikaviaeSFerIfennliknglLplefke 130
                  +lG+ a+i+ SF+rI+e+nl+k+g+Lpl+f++
   CCE27572.1 687 HLGGLAIITRSFARIHETNLKKQGMLPLTFAD 718
                  *****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5750.64
//
Query:       CCE27573.1  [L=383]
Description: related to mouse proteinase activated receptor 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-05   22.4   4.9    0.00016   21.7   4.9    1.2  1  Rhomboid       Rhomboid family
  ------ inclusion threshold ------
       0.11   12.4   0.2         18    5.4   0.0    2.7  3  Ribosomal_L29  Ribosomal L29 protein


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   4.9   1.7e-08   0.00016      70     145 ..     243     319 ..     218     323 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.7e-08
                 ....-EESSHHHHHHHHHHHHHHHHCCCCGS----HC....CCCCCCCCCCHHHCTSSSTTTHHHHHHHHHHHHHHHHHH CS
    Rhomboid  70 s...plvGaSGaifgllgallvlvprnrkllrkliia.llllllfillnlvlgllpraggvsnlAHlgGllaGlllglll 145
                 +    ++GaS ++f llg+ +++ ++++ ++       ++   +++ + +v+++l ++   s l+Hl+G+++G++ gl  
  CCE27573.1 243 RgnrSVMGASVWVFLLLGIEAIRTYKSNPHITIGTYHiPTWTTPLF-MMFVIAVLMPN--TSLLGHLCGVAVGYVCGLGY 319
                 233399*************999988877777766666244444444.44444444443..7**************99765 PP

>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.002        18      21      46 ..      76     101 ..      72     101 .. 0.88
   2 ?   -3.5   0.0       1.2   1.1e+04      16      23 ..     121     128 ..     120     129 .. 0.65
   3 ?    4.1   0.0    0.0052        47      22      49 ..     167     192 ..     163     193 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.002
                    HHHHHHHHHHHTSSS-CHHHHHHHHH CS
  Ribosomal_L29  21 eLfnLrfqkatgqlenpsrirkvRkd 46 
                    e f+Lr + +t     ps i +vR++
     CCE27573.1  76 EPFQLRHKLVTMLKGSPSDIQHVRRT 101
                    679*********556*********96 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.2
                    HHHHHHHH CS
  Ribosomal_L29  16 kelkkeLf 23 
                    ++lk+eL 
     CCE27573.1 121 DDLKQELS 128
                    57777775 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0052
                    HHHHHHHHHHTSSS-CHHHHHHHHHHHH CS
  Ribosomal_L29  22 LfnLrfqkatgqlenpsrirkvRkdIAR 49 
                    L +  ++ +tg  ++p+    v +dIAR
     CCE27573.1 167 LIEEEVNTQTG--QKPAARDIVSRDIAR 192
                    77788899999..**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3177.47
//
Query:       CCE27574.1  [L=386]
Description: related to GPI-anchor transamidase GAA1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.3e-129  432.1   0.0   3.8e-129  432.0   0.0    1.0  1  Gaa1      Gaa1-like, GPI transamidase component


Domain annotation for each model (and alignments):
>> Gaa1  Gaa1-like, GPI transamidase component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.0   0.0  2.1e-133  3.8e-129       1     290 [.      36     316 ..      36     383 .. 0.90

  Alignments for each domain:
  == domain 1  score: 432.0 bits;  conditional E-value: 2.1e-133
        Gaa1   1 kGeNvygilrAprgdstEAlVLvapwrtsdgeknlagvalalalaryfkrqslWaKDiIflvtedeqlglqaWleaYhdvetstlsvqsLdgkaGaiqa 99 
                 +GeN+ygil+Aprgd+tEA+VLva+w++ dg  n++gvalal+l+ryfkr+slW+KDiI+l++++++ g+qaW++aYhd++++  +v sL++k+Ga+q 
  CCE27574.1  36 TGENLYGILQAPRGDATEAIVLVAAWQNIDGLLNRNGVALALTLMRYFKRWSLWSKDIIILIPPNSRTGTQAWVDAYHDAHDN-QKVASLPLKSGALQV 133
                 59*******************************************************************************99.99************* PP

        Gaa1 100 AlvlelpssedeidsldikyeGlNGqLPNlDLfnlavsiaskemgikvslqgtlskedsaesyesrlktllrgllkqalgvptgahglFlrYhidaiTl 198
                 A+++++ps +  +d ++i y+G+NGqLPNlDL+n +v++a ++mg+++++qg+ s++d   sy +rlkt++rg+lkq+lg  tg+h++F++Yh+da+Tl
  CCE27574.1 134 AVAIDYPSCQS-FDGIHIIYDGINGQLPNLDLINSIVNVAGGQMGMRTAIQGMHSHDD---SYRDRLKTIFRGMLKQGLGIGTGPHSSFIPYHVDAVTL 228
                 ******77776.**********************************************...************************************** PP

        Gaa1 199 kakgkkrsgkeditqlGrviEgvfRslNNLLErlHqSFFfYlLlstsrFvSIGtYlpsavllaasllikalalwlelsksqekeesekaeee 290
                    g   +g++d++++GrviEg+fRslNNLLE+lHqSFFfYlL++ +rFvSIGtYlpsa+llaa+++i+a++lw++ s++++   + ++ e+
  CCE27574.1 229 VPYG---EGWQDEMAMGRVIEGTFRSLNNLLEHLHQSFFFYLLMQRDRFVSIGTYLPSAMLLAANFTIMAISLWVK-SGQSALLAKGEKLES 316
                 8888...9*******************************************************************4.454444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3030.38
//
Query:       CCE27575.1  [L=381]
Description: related to 26S proteasome regulatory particle chain RPN9 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-07   32.3   0.0    3.4e-07   30.7   0.0    1.8  1  PCI       PCI domain
    4.2e-07   29.4   1.8      1e-06   28.2   1.8    1.5  1  Rpn9_C    Rpn9 C-terminal helix


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   3.8e-11   3.4e-07       2     104 ..     236     338 ..     235     339 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 3.8e-11
                 HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH....CESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEET CS
         PCI   2 sysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvsk....iyssislerlaklldlsvdevEkilvklIrdgeirakidq 96 
                 +++dll a+++g+l++++ +       +  ++ l+++ + L++k+ + +l + ++      +  ++  +++  ++ ++e+E++ +k+ + g+ir++idq
  CCE27575.1 236 WLRDLLFAFNRGDLAAYDVLSHH----ISTNKLLNEHSTHLRQKIHLAALTEAVFrrppHDRAMTFTIIEQETKVRQNEIEHLFMKALSLGLIRGTIDQ 330
                 678999********999876555....599999******************99999**766779*********************************** PP

                 TTTEEEEC CS
         PCI  97 esgivvfk 104
                 +++i +++
  CCE27575.1 331 VDQIAYVT 338
                 ***98875 PP

>> Rpn9_C  Rpn9 C-terminal helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   1.8   1.1e-10     1e-06       6      29 ..     349     372 ..     346     372 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.1e-10
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
      Rpn9_C   6 QInkMKdrLVeWdeqVtkLGkkie 29 
                 QI+ M++rL eWd+ V  LG  ie
  CCE27575.1 349 QIDSMRQRLLEWDSSVNQLGNWIE 372
                 ********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2845.11
//
Query:       CCE27576.1  [L=372]
Description: probable NADH2 dehydrogenase (ubiquinone) 40K chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-15   56.0   0.0    5.7e-15   55.5   0.0    1.3  1  NmrA            NmrA-like family
    1.3e-13   51.2   0.0    1.8e-13   50.8   0.0    1.3  1  NAD_binding_10  NAD(P)H-binding
    2.6e-13   50.0   0.0    5.7e-13   48.9   0.0    1.6  2  Epimerase       NAD dependent epimerase/dehydratase family
    1.9e-08   33.6   0.0      4e-08   32.6   0.0    1.5  2  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    3.5e-07   29.9   0.0    5.2e-07   29.4   0.0    1.3  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
    0.00015   21.0   0.0      0.011   14.8   0.0    2.3  1  RmlD_sub_bind   RmlD substrate binding domain
     0.0011   18.5   0.0     0.0018   17.8   0.0    1.3  1  adh_short       short chain dehydrogenase
  ------ inclusion threshold ------
       0.01   15.0   0.1        1.1    8.4   0.1    2.3  2  NAD_binding_4   Male sterility protein
       0.19   11.4   0.0       0.38   10.4   0.0    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
       0.21   11.5   0.0        1.7    8.5   0.0    2.2  2  KR              KR domain


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   3.2e-18   5.7e-15       2     228 ..      49     274 ..      48     327 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 3.2e-18
                 EESSTTSHHHHHHHHHHHHHT-EEEEEES-S.-SHHHHHHHHSTTEEE.ES-TT-HHHHHHHHTT-SEEEE---GG.........S-HHHHHHHHHHHH CS
        NmrA   2 lviGaTGrqGksvvrallkaghkvralvRdt.kselakslkeaGvelv.kgdlddkeslvealkgvdvvfsvtgfy.........skeiedgkklvdAa 89 
                 +v+GaTG++G+++v+ l+++g +v +  R++  +  ++   + G  +  + dl +  s+++ ++ +dvv+  +g           + ++    ++v+A+
  CCE27576.1  49 TVFGATGQLGRYIVNRLARQGCTVVIPFREEmAKRHLRVTGDLGRIVFvEYDLHNTPSIEASIRHSDVVYNLIGREyptknfsleEVHVGGTERIVEAV 147
                 7*****************************9455555666678865545************************987899999977777888899***** PP

                 HHHS-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE.-HHHHHH CS
        NmrA  90 keaGvkhfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavll.daeeDiG 187
                 ++  v ++i  s  ++n +s     + +++++K + e++ r++   +t+v++    ++  +ll +         +  ++l +  n ++++  ++  D+G
  CCE27576.1 148 AKYDVDRYIHVSSHSANPKS-----SSEFYATKGRGEQVARSIFPETTIVRPAPMFGFEDRLLLK-------L-ASVLNLFTANNMQERFWpVHSIDVG 233
                 **********9999999888.....8899*************98888888877766666666665.......2.2356788888888888888****** PP

                 HHHHHHHHHHHHH.TTEEEEE-SEEE-HHHHHHHHHHHHTS- CS
        NmrA 188 afvikilkdprkl.kgkriklagntlsgneivelfekkigkt 228
                 a+  kil d +++ ++  +  +++ +s+ ei++l  k+i k+
  CCE27576.1 234 AALEKILYDDATAgETFELYGPKE-YSMSEIAALADKEIYKK 274
                 *********999978888888876.6***********99876 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0     1e-16   1.8e-13       1     144 [.      52     195 ..      52     239 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 1e-16
                     TTTSHHHHHHHHHHHHC-T-EEEEEETT...HHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHH.........HHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRn...peklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeeg.........aknivd 83 
                     GAtG+ Gr++v++l+++g  +v++  R+   + +l    +  ++  ve d++++ ++++ +++ d+V+  +g++  +++          +++iv+
      CCE27576.1  52 GATGQLGRYIVNRLARQG-CTVVIPFREemaKRHLRVTGDLGRIVFVEYDLHNTPSIEASIRHSDVVYNLIGREYPTKNFsleevhvggTERIVE 145
                     9****************5.9****999944345555444779*****************************998885555666668999****** PP

                     HHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE- CS
  NAD_binding_10  84 aakeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpg 144
                     a+ + +v R++ vs+  ++    ++         ++ +a k + e++ r+   + Tivrp+
      CCE27576.1 146 AVAKYDVDRYIHVSSHSANP---KSS--------SEFYATKGRGEQVARSIFPETTIVRPA 195
                     ****************9994...322........345788888888888888888888886 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   3.2e-16   5.7e-13       2     124 ..      49     169 ..      48     190 .. 0.86
   2 ?   -3.2   0.0       2.7   4.8e+03     164     177 ..     244     257 ..     242     277 .. 0.69

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 3.2e-16
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl....elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtl 96 
                  V GatG++G+++v++l+++g +v+   r++ a+++ r         +ve dl +  ++e+ ++  + d+v++l +   +  +++      e ++ gt 
  CCE27576.1  49 TVFGATGQLGRYIVNRLARQGCTVVIPFREEMAKRHLRVTGDlgriVFVEYDLHNTPSIEASIR--HSDVVYNLIGREYPTKNFSL----EEVHVGGTE 141
                 699********************88888886777666655547*99******************..9*******776677666666....4579***** PP

                 HHHHHHHHHTCTEEEEEEEGGGGTSCSS CS
   Epimerase  97 nlleaarkagvkrllflsSsevYGkdae 124
                 +++ea+ k++v+r++++sS++  +k+ +
  CCE27576.1 142 RIVEAVAKYDVDRYIHVSSHSANPKSSS 169
                 *******************999887765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.7
                 EEEEEESEEESTTS CS
   Epimerase 164 aiilrlfnlyGprn 177
                 a+++  f lyGp +
  CCE27576.1 244 ATAGETFELYGPKE 257
                 67788899999982 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   2.2e-11     4e-08       2     119 ..      50     163 ..      49     189 .. 0.84
   2 ?   -2.2   0.0      0.89   1.6e+03     173     193 ..     189     209 ..     163     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 2.2e-11
   3Beta_HSD   2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrnvl 100
                 v G++G lGr++v++L r +    v  +  +  ++ l  +  ++++ ++e D+ +++++e+ ++ +dvv  l +    ++++   ++ +v v GT+ ++
  CCE27576.1  50 VFGATGQLGRYIVNRLARQGC-TVVIPFREEMAKRHLRVTGDLGRIVFVEYDLHNTPSIEASIRHSDVVYNLIGREYPTKNF---SLEEVHVGGTERIV 144
                 89******************5.5555555666666677888899999***********************996666665533...477*********** PP

   3Beta_HSD 101 eacvkagvrvlvYtSsaev 119
                 ea  k +v + +++Ss ++
  CCE27576.1 145 EAVAKYDVDRYIHVSSHSA 163
                 ****************876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.89
   3Beta_HSD 173 TcaLRpagiyGegdkllvpll 193
                 T  +Rpa ++G  d+ll++l+
  CCE27576.1 189 TTIVRPAPMFGFEDRLLLKLA 209
                 8889*******9999988765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   2.9e-10   5.2e-07       2     129 ..      50     160 ..      49     197 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.9e-10
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHHH CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPey 97 
                    + G +G+ G y++++L ++g +v++  r + + +     hl+        +++ +++ Dl ++ s+e  +++   d vynL +     + f+    
     CCE27576.1  50 VFGATGQLGRYIVNRLARQGCTVVIPFREEMAKR-----HLRVTG---DLGRIVFVEYDLHNTPSIEASIRHS--DVVYNLIGREYPTKNFSL--- 132
                    78*********************88776655433.....443221...2479********************9..9**********9999985... PP

                    HHHHHTHHHHHHHHHHHHCT..TTSEEEEEEE CS
  GDP_Man_Dehyd  98 taevnvlGtlrLLeairalglekkvrfyqaSt 129
                      ev v Gt r++ea+ ++ ++   r++++S+
     CCE27576.1 133 -EEVHVGGTERIVEAVAKYDVD---RYIHVSS 160
                    .88999*************987...6666665 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.2e-06     0.011       4     153 ..      49     199 ..      46     278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.2e-06
                    EEESTTSHHHHHHHHHCTTTSEEEEEE-TT...................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTH CS
  RmlD_sub_bind   4 lvtGanGqlGseLakqlaeeglevlaltre...................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnae 80 
                     v+Ga+GqlG+ ++++la++g+ v+ + re                   e dl++  ++++ +++   dvv+n+          +++ + ++v + 
     CCE27576.1  49 TVFGATGQLGRYIVNRLARQGCTVVIPFREemakrhlrvtgdlgrivfvEYDLHNTPSIEASIRH--SDVVYNLIGREYP----TKNFSLEEVHVG 138
                    699*********************99999999999999999999999999999999999999999..8899998654433....334455667788 PP

                    HHHHHHHHHHHCT-.EEEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SSEEEEEE-SEES CS
  RmlD_sub_bind  81 avealAeaaaavga.lLihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavlaagkkalivRtswvyg 153
                    ++e++ ea a++++   ihvS+               ++++  + + +tK +GEq+ ++  ++++ivR + ++g
     CCE27576.1 139 GTERIVEAVAKYDVdRYIHVSSHS-------------ANPKSSSEFYATKGRGEQVARSIFPETTIVRPAPMFG 199
                    888888888888874478888643.............2223333444567777777777777777777766666 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   9.9e-07    0.0018       2      70 ..      47     113 ..      46     122 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 9.9e-07
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvek 70 
                 ++ v Ga++ +Gr i+++la++G++vv+  r+ e +++ +   +++  +++++++D+ +  ++ea +++
  CCE27576.1  47 TATVFGATGQLGRYIVNRLARQGCTVVIPFRE-EMAKRHLRVTGDL-GRIVFVEYDLHNTPSIEASIRH 113
                 6889**********************994444.3344444444444.68*********99999998776 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00059       1.1       3      32 ..      52      79 ..      50      94 .. 0.83
   2 ?    4.6   0.0    0.0087        16     107     147 ..     132     171 ..     105     289 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00059
                   -TTSHHHHHHHHHHHHHS-.TEEEEEE-SS CS
  NAD_binding_4  3 GaTGFLGkvLlekLLrttpevkiyllvRak 32
                   GaTG LG++++++L r+    ++++  R++
     CCE27576.1 52 GATGQLGRYIVNRLARQGC--TVVIPFREE 79
                   9**************9975..777777766 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0087
                    EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT- CS
  NAD_binding_4 107 llrvNveGtrevlelakklkklkvllhvSTayvngeregev 147
                    l +v v Gt++++e  +k      ++hvS+  +n+++++e+
     CCE27576.1 132 LEEVHVGGTERIVEAVAKYDVD-RYIHVSSHSANPKSSSEF 171
                    6678899*******99999888.9******99998888765 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00021      0.38       7      49 ..      55      93 ..      49     117 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00021
                SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETTCE CS
        ApbA  7 GaiGsllaakLakagadvtlilrsrrlealkknGlrltsegge 49
                G +G+++  +La++g++v++ +r++    + k+ lr+t++ g 
  CCE27576.1 55 GQLGRYIVNRLARQGCTVVIPFREE----MAKRHLRVTGDLGR 93
                899********************99....66777777766644 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00097       1.7       4      29 ..      49      74 ..      46     117 .. 0.75
   2 ?    0.1   0.0      0.36   6.4e+02     113     139 ..     137     163 ..     131     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00097
                EEETTTSHHHHHHHHHHHHHHS-EEE CS
          KR  4 litGGlGgLGlelarwlaekgarhlv 29
                 + G++G+LG+ +++ la++g + ++
  CCE27576.1 49 TVFGATGQLGRYIVNRLARQGCTVVI 74
                589******************87554 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.36
                 THHHHHHHHHTTTS--SEEEEEEEHHH CS
          KR 113 vkGawnLhelledesldffvlfSSiag 139
                 v G++ + e++++ ++d  + +SS ++
  CCE27576.1 137 VGGTERIVEAVAKYDVDRYIHVSSHSA 163
                 7899999*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2650.96
//
Query:       CCE27577.1  [L=234]
Description: probable NADH2 dehydrogenase (ubiquinone) 40K chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-54  183.6   0.0    2.8e-54  183.3   0.0    1.1  1  N6-adenineMlase  Probable N6-adenine methyltransferase
  ------ inclusion threshold ------
      0.039   13.6   0.2      0.055   13.2   0.2    1.2  1  DUF4300          Domain of unknown function (DUF4300)
      0.076   13.1   2.0       0.12   12.4   2.0    1.2  1  TPR_MLP1_2       TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> N6-adenineMlase  Probable N6-adenine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.3   0.0   4.7e-58   2.8e-54       1     159 [.      52     226 ..      52     227 .. 0.95

  Alignments for each domain:
  == domain 1  score: 183.3 bits;  conditional E-value: 4.7e-58
  N6-adenineMlase   1 edwqlsQfwysdetaealakelleeeeskkiaclsaPsvyealkkek......kkekvlLleiDkrFealygeekfvfYdlnnpeelpeelkgk 88 
                      edw++sQfwysdetae la++ll+ +++++i ++s+Psv++al+++        + kv+Lle+D+rF a+++ e fv+Yd+++p++lp ++kg+
       CCE27577.1  52 EDWNKSQFWYSDETAELLADQLLSASGNSSIGVISTPSVFVALRNKLrdlpldRQPKVVLLEHDDRF-AVFP-E-FVYYDYQQPLKLPGNMKGS 142
                      89***********************99******************9999***9889***********.6654.5.******************* PP

  N6-adenineMlase  89 fdviviDPPFlseeclkklaktaklllk.........klilctgevmee.lekll...gvkktkfepehenklsnefrlYanfe 159
                       d +++DPPFl+e+c++k+a t+++llk         ++i+ctge+m++ ++kl+   +v++t+fep+h+++lsnef++Yanfe
       CCE27577.1 143 LDSVICDPPFLNEDCQTKAALTVRWLLKsdpcpstlpRVIVCTGERMKHiVAKLYrslKVQTTNFEPKHASGLSNEFYCYANFE 226
                      *************************************9***********7555557778************************8 PP

>> DUF4300  Domain of unknown function (DUF4300)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   9.2e-06     0.055     103     174 ..       3      70 ..       1      89 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.2e-06
     DUF4300 103 kdeselflDldalknapkkelskkdkekFetlfseiptestkdvkkhvekikkewkkrgisfkekekislis 174
                 +d++ l+l   al     +e++ +++++ ++ f e+++++ kd + ++e+++++w+k ++ ++++  ++l+ 
  CCE27577.1   3 EDDQSLMLSAHALAAL--AEFN-AERDAHQSKFDELKAQADKDAQFSMEAFAEDWNKSQFWYSDE-TAELLA 70 
                 5788888888888866..5665.678999*********************************996.888875 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.0     2e-05      0.12      47     108 ..       6      68 ..       4      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2e-05
  TPR_MLP1_2  47 relvkhaedvkelqalreelnelkaeiaelkaeaes.akaeleeseesweeqkeelekelsel 108
                 + l++ a ++ +l+++++e +  +++  elka+a++ a+ ++e+  e w++ +  + +e +el
  CCE27577.1   6 QSLMLSAHALAALAEFNAERDAHQSKFDELKAQADKdAQFSMEAFAEDWNKSQFWYSDETAEL 68 
                 679*******************************854999999999***99999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1687.15
//
Query:       CCE27578.1  [L=515]
Description: related to ubiquitin-specific protease 22 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-48  163.2   3.6    9.7e-48  162.9   3.6    1.1  1  UCH           Ubiquitin carboxyl-terminal hydrolase
    5.2e-31  108.4   7.5    7.7e-31  107.9   7.5    1.2  1  UCH_1         Ubiquitin carboxyl-terminal hydrolase
    0.00037   20.8   0.1    0.00037   20.8   0.1    2.5  2  zf-UBP        Zn-finger in ubiquitin-hydrolases and other pro
  ------ inclusion threshold ------
        1.7    8.2  13.1        3.1    7.4   0.0    4.3  4  TF_Zn_Ribbon  TFIIB zinc-binding
        6.4    7.0  11.2        4.8    7.4   0.1    4.4  4  zf-CCHC       Zinc knuckle


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   3.6   2.7e-51   9.7e-48       2     257 .]     181     509 ..     180     509 .. 0.90

  Alignments for each domain:
  == domain 1  score: 162.9 bits;  conditional E-value: 2.7e-51
                 EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH..SH-CCEE--HHHHHHHHHHSGGGT...SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx...xx RF
         UCH   2 GlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell..kskskavsPkklkktlsklaksfs...gy 95 
                 G+ N+G+tCy n vlQ++++ p lr++ ls       + ++     sn+ +  + l++a+ d+f++++  + ++ + + + l  +  +++k f+   + 
  CCE27578.1 181 GIYNAGATCYQNVVLQSFLHNPLLRNFYLS-------DGHQ-----SNDCTVPHCLSCAMDDMFQDFYalEATNGYTAANILSGFWISEKKAFEnlvTT 267
                 9************************99999.......4444.....344555667*************99666777777666666555556566555** PP

                 STCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
         UCH  96 kqqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks................................................. 145
                 k qDa+Ef++fl ++lhe   +   ++    ++ + +++i++ f+g++++                                                 
  CCE27578.1 268 KEQDAHEFFQFLAEDLHERNGD--GKKPEIGSEHSCNCIIHQTFYGKMQTtttcqnckgttntiqsfldlslgldnlmqrrpkklghktpdltlsdcln 364
                 ******************9988..5555577778899************************************************************** PP

                 ........................EEEEEEB-SEEEEEEESEEETEE.....EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-B......EEEEEEEE CS
                 ........................xxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxx RF
         UCH 146 ........................klklkrlPeiLiihlkRfsynss.....ksKlntkvefpeeldlssylaeekkkkteekkk......YeLiavvv 209
                                           ++krlP++L+i+lkRf+y++       sK++++v+fp++l++ +y+++  +++++e+ +      Y+L +v+v
  CCE27578.1 365 eeyvkfdkceyrchncsstqqakrYSSIKRLPNVLSIQLKRFEYKQGrhdsaASKIDHTVQFPLQLNMLPYTNRVRNRDNRESLElersctYDLLSVIV 463
                 ***********************999******************666677889******************99888888777777889999******** PP

                 EESCTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHCCCTT.CEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
         UCH 210 HsGslssGHYvayiknekngkWykydDetvkevkeeeevls.sayiLfY 257
                 H G+ + GHYvay++     +W+k++D++v+  + + evl  +ay+LfY
  CCE27578.1 464 HVGEIETGHYVAYCR--VGDQWFKFNDHKVELASIS-EVLGaQAYLLFY 509
                 ***************..7899************977.88888******* PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   7.5   2.2e-34   7.7e-31       4     320 .]     183     491 ..     181     491 .. 0.79

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 2.2e-34
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   4 EnhivnsYlNslLQvlyfipplrnlals..hlakeckkehcLlcElgflf.dmldkakglncqasnFlralssipeasalglileeeeetekssaisls 99 
                  n  +++Y N +LQ + + p+lrn++ls  h++++c+  hcL+c +  +f d      ++   a n l  +  +++++  +l++ +e++          
  CCE27578.1 183 YNAGATCYQNVVLQSFLHNPLLRNFYLSdgHQSNDCTVPHCLSCAMDDMFqDFYALEATNGYTAANILSGFWISEKKAFENLVTTKEQD---------- 271
                 56779*******************9997669999****************6444445566899*********77766666777554333.......... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxx...xxxxxxxxxxxxx RF
       UCH_1 100 sliqsfnrflldqlekelketkkns....seeesaieqllgtkaettirclkCgseksrksstlvldlky.......Pkpsne...kkeakvtfasilk 184
                     +f +fl ++l++     kk++    ++ + +i+q +  k++tt++c++C+ +++  +s+l l+l         P    +   +k+++ t++++l+
  CCE27578.1 272 --AHEFFQFLAEDLHERNGDGKKPEigseHSCNCIIHQTFYGKMQTTTTCQNCKGTTNTIQSFLDLSLGLdnlmqrrP----KklgHKTPDLTLSDCLN 364
                 ..2469*********998887777788877778899*****************************9664421111222....1345888889******* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 185 sslerekttrawCekCkryqpteqrktvknlPpvLalnakleeeeelelwkt......knwlpleiklsldedknleeklkeerekakaekeikvYeLq 277
                 +   + ++ ++ C +C++ q+ ++ +++k+lP+vL++++k++e ++ ++ ++      +  +pl++++  + ++     +++++ ++ + +++ +Y+L 
  CCE27578.1 365 EEYVKFDKCEYRCHNCSSTQQAKRYSSIKRLPNVLSIQLKRFEYKQGRHDSAaskidhTVQFPLQLNMLPYTNR----VRNRDNRESLELERSCTYDLL 459
                 ****************************************9966422222223445434677777777555554....344444444667899****** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 278 svvvhigdskesghLvslvkvaekelerdppesqWylFNDflV 320
                 sv+vh+g+ +  gh+v++++v           +qW++FND +V
  CCE27578.1 460 SVIVHVGEIE-TGHYVAYCRV----------GDQWFKFNDHKV 491
                 *******666.9*********..........369******887 PP

>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1     1e-07   0.00037      10      63 ..      80     129 ..      68     130 .. 0.90
   2 ?   -3.1   0.9       2.9     1e+04      51      57 ..     376     382 ..     362     391 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1e-07
                 SEEEETTT--EEE-TTTT-HHHHHHHHH---EEEETTT--EEETTTTEEBE-GC CS
      zf-UBP  10 nlWlCLkCghvgCgrksnghalkHyeetrHplavdlstlsvycyscddevedke 63 
                 +++lCL+C + +  +      l+H  ++ H + vd +++++yc  cdd + d++
  CCE27578.1  80 SNYLCLQCPTTVTEE----DRLSHGTKKSHRFYVDSRSGTLYCQICDDLIWDPT 129
                 689******998875....7799999**********************998875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.9
                 EETTTTE CS
      zf-UBP  51 ycyscdd 57 
                  c++c +
  CCE27578.1 376 RCHNCSS 382
                 4444443 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00086       3.1      18      40 ..      80     103 ..      78     106 .. 0.89
   2 ?    2.9   0.1     0.022        79       8      25 ..     104     121 ..     102     129 .. 0.84
   3 ?    2.4   0.4     0.031   1.1e+02      16      26 ..     313     324 ..     302     329 .. 0.76
   4 ?    1.7   1.0     0.052   1.9e+02       1      11 [.     375     385 ..     362     391 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00086
                   TCEEESSS.SBEEEECCCCCCCHH CS
  TF_Zn_Ribbon  18 gelvCtdC.GlVlednsidegpew 40 
                    +++C  C ++V e++  ++g  +
    CCE27578.1  80 SNYLCLQCpTTVTEEDRLSHGTKK 103
                   699***************999765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.022
                   CEECHEETSTTCEEESSS CS
  TF_Zn_Ribbon   8 stnlveDpergelvCtdC 25 
                   s ++++D  +g+l+C  C
    CCE27578.1 104 SHRFYVDSRSGTLYCQIC 121
                   55699**********988 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.031
                   STTCEEESSS.S CS
  TF_Zn_Ribbon  16 ergelvCtdC.G 26 
                   ++++++C +C G
    CCE27578.1 313 MQTTTTCQNCkG 324
                   677788888866 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.052
                   EEETTTTCEEC CS
  TF_Zn_Ribbon   1 ykCPnCgstnl 11 
                   y+C nC+st++
    CCE27578.1 375 YRCHNCSSTQQ 385
                   68999999876 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0013       4.8      10      17 ..     212     219 ..     210     220 .. 0.90
   2 ?   -0.4   1.2      0.42   1.5e+03       2       8 ..     318     324 ..     318     325 .. 0.82
   3 ?    1.1   0.4      0.13   4.8e+02       3       8 ..     377     382 ..     376     383 .. 0.79
   4 ?    2.2   0.0     0.063   2.2e+02       8      17 ..     469     478 ..     469     479 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0013
                 SSTTTTST CS
     zf-CCHC  10 GHiardCp 17 
                 GH+++dC+
  CCE27578.1 212 GHQSNDCT 219
                 *******8 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.42
                 CTSSSSS CS
     zf-CCHC   2 kCynCGe 8  
                 +C nC +
  CCE27578.1 318 TCQNCKG 324
                 6****86 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.13
                 TSSSSS CS
     zf-CCHC   3 CynCGe 8  
                 C+nC +
  CCE27578.1 377 CHNCSS 382
                 ****65 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.063
                 SSSSTTTTST CS
     zf-CCHC   8 epGHiardCp 17 
                 e+GH+   C 
  CCE27578.1 469 ETGHYVAYCR 478
                 79*****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3615.59
//
Query:       CCE27579.1  [L=461]
Description: uncharacterized protein CPUR_01053 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-08   35.5   0.1    1.8e-08   34.6   0.1    1.3  1  APH             Phosphotransferase enzyme family
    3.7e-05   23.4   0.0    6.1e-05   22.7   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
      0.015   14.7   0.0      0.028   13.8   0.0    1.3  1  Pkinase         Protein kinase domain


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.1   3.1e-12   1.8e-08      38     200 ..      63     236 ..      60     244 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 3.1e-12
                 HHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHH CS
         APH  38 rrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr...klsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesat 133
                 ++ v  +++ +++g++vP++  + +dd++      ++ ++pg++l+    +l    + +l+ ++ +   +l ++  ++++ ++ ++ + ++l ++ +  
  CCE27579.1  63 EDAVSAMKFASQLGIHVPRIQRIVKDDDGF---CCIMDRIPGTTLDIawhELGWIASLRLAFQMRRIVLRLRSAMSTSSGSPRKGECTSYFLDDRFNL- 157
                 56677899999*********9965555555...58999999999999665555555666666666666799999999999999998878888777777. PP

                 HCCCGCCTCC.HHHHHHHHHHHHHHHH--S..................SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEE CS
         APH 134 arllaselld.lleeleeqvlaalaallpg..................elptvllHgDlhpgNllvdpddgrvtGviDfedaglgp 200
                  +l+as  +    + +++     +a l +                   + p v++H Dl p+N+++dp+++    viD+++ag  p
  CCE27579.1 158 -PLRASGHHMnAFLNFWA----NFAGLGREikktpaehaicrrpiftdSRPFVFTHHDLAPRNIILDPEGQLH--VIDWDLAGFYP 236
                 .77777777744444444....44444444444666677788888889*******************997777..*******9876 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0     1e-08   6.1e-05     140     181 ..     199     239 ..     174     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1e-08
                     CHGG-EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHH CS
  Choline_kinase 140 elespvvfcHnDlqegNillnkeekklvlIDFEYagynyrgf 181
                         p vf H Dl ++Ni+l + e++l +ID+  ag+ +  f
      CCE27579.1 199 TDSRPFVFTHHDLAPRNIIL-DPEGQLHVIDWDLAGFYPEFF 239
                     566789**************.99**********999877766 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.7e-06     0.028     119     148 ..     206     235 ..     203     247 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.7e-06
                 EE-SS-SGGGEEEETTTEEEE-SGTTSEES CS
     Pkinase 119 iiHrDlKpeNiLidekgelKitDFGlakel 148
                 + H Dl p Ni++d +g+l ++D++la  +
  CCE27579.1 206 FTHHDLAPRNIILDPEGQLHVIDWDLAGFY 235
                 68************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3489.70
//
Query:       CCE27580.1  [L=183]
Description: uncharacterized protein CPUR_01054 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1372.39
//
Query:       CCE27581.1  [L=1169]
Description: related to nuclear protein SA-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-10   38.7   2.2    1.7e-08   34.3   0.0    3.0  2  STAG            STAG domain
    0.00022   21.5   0.2        1.1    9.7   0.0    3.3  3  HEAT_2          HEAT repeats
     0.0025   18.1  11.3     0.0025   18.1  11.3    5.9  5  CENP-B_dimeris  Centromere protein B dimerisation domain
  ------ inclusion threshold ------
       0.02   14.9   0.5         12    5.9   0.0    3.3  3  Cnd1            non-SMC mitotic condensation complex subunit 
      0.025   14.7   1.2        0.1   12.7   1.2    2.0  1  DUF1090         Protein of unknown function (DUF1090)
      0.031   13.9   0.0       0.24   11.0   0.0    2.4  2  MIF4G           MIF4G domain
      0.055   12.2   0.0      0.055   12.2   0.0    3.1  4  Adeno_PV        Adenovirus minor core protein PV


Domain annotation for each model (and alignments):
>> STAG  STAG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   6.8e-12   1.7e-08       2      50 ..     211     260 ..     210     261 .. 0.96
   2 ?    1.6   1.6     0.097   2.5e+02      78     109 ..     263     292 ..     260     299 .. 0.73

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 6.8e-12
        STAG   2 eYpliskkkklkkfrknlveFfeklvesahekglLy.deelmenlltwlt 50 
                 +Ypl+s++k  ++fr+ l+ F ++lve +he+++Ly   elm++l++wl+
  CCE27581.1 211 DYPLVSRAKGNRSFRDILIGFYQSLVELLHETDTLYtVPELMDTLHAWLA 260
                 8***********************************8899********96 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.097
        STAG  78 vakelskeleklqrqleaekkkkkankkrlee 109
                 va+ l+++++++++ql+a k+ k+++k++  e
  CCE27581.1 263 VASILDRRIANIEQQLQAAKRSKNKAKTT--E 292
                 78889999*********999955544432..2 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00042       1.1      10      58 ..     324     380 ..     318     396 .. 0.78
   2 !    8.0   0.1    0.0014       3.7       3      81 ..     398     493 ..     396     500 .. 0.77
   3 ?   -3.7   0.0       6.7   1.7e+04       6      20 ..     529     543 ..     525     548 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00042
      HEAT_2  10 ndpdpevrraairaLg........rignpealpaLvellededpavRraaaeaLgai 58 
                 +d dp++r++ ++aLg         + +p +l++L  +l+d+++ +R+++ + L ++
  CCE27581.1 324 RDIDPKIRAECVDALGswilslptVFMEPGYLRYLGWMLSDTNAQTRQEVLKQLLKV 380
                 5779************865555533455688********************999776 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0014
      HEAT_2   3 aLlqalendpdpevrraairaLg.....rignpealpaLvellededpavRraaaeaLg............aigdpealpaLkellddddddvvRe 81 
                  L+++++ d +  vr +ai ++       + +p+ ++a+ +l+ d++ ++R+a+++  +            +ig +e+l+ L e   dd +  ++e
  CCE27581.1 398 RLIEIATLDLEVSVRVTAISVIDvlrsaAMLDPSEIDAIGKLIFDSELRIRKAVVNFFVacvadvlegkkeQIGGQEVLDELDEVEEDDYENPRKE 493
                 6999998899*************777666667788********************96652334444445556688888888888666666666665 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 6.7
      HEAT_2   6 qalendpdpevrr.aa 20 
                 ++l + ++p++r+  a
  CCE27581.1 529 ELL-DGASPDTRIsLA 543
                 334.445555554233 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   9.7     0.057   1.4e+02      12      44 ..      51      83 ..      45      93 .. 0.62
   2 ?   -1.1   0.5         1   2.6e+03      23      51 ..     477     505 ..     462     513 .. 0.56
   3 ?    1.2   0.0      0.19   4.8e+02      28      60 ..     815     847 ..     811     860 .. 0.79
   4 !   18.1  11.3   9.9e-07    0.0025       5      45 ..     964    1004 ..     961    1051 .. 0.79
   5 ?  -22.8  26.2         7   1.8e+04      27      41 ..    1133    1147 ..    1087    1168 .. 0.57

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.057
  CENP-B_dimeris 12 sesesdeeeeee.eedeededeeddedddevpvp 44
                     + +sde+  ++   deed+d++ + d+d  p p
      CCE27581.1 51 QDVDSDENGLDNkTSDEEDNDDDAQSDGDH-PAP 83
                    466777776554056667777766666664.655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1
  CENP-B_dimeris  23 eeedeededeeddedddevpvpsfgeama 51 
                     +e de +ed+ ++  ++ v +  + e++a
      CCE27581.1 477 DELDEVEEDDYENPRKEWVNIKCLAETLA 505
                     22233333333333445566666666665 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.19
  CENP-B_dimeris  28 ededeeddedddevpvpsfgeamayfamvkryl 60 
                     e +d+e de +dev   ++  +  yf    r l
      CCE27581.1 815 EPQDDEIDELEDEVVTFAIKASQFYFMWKTRAL 847
                     66899999999**99888888888887665655 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 9.9e-07
  CENP-B_dimeris    5 lleagedsesesdeeeeeeeedeededeeddedddevpvps 45  
                      l e  ed +   de+ ++++ed+ed+d++dded+ + p   
      CCE27581.1  964 LNEPAEDEDPLDDEDLDDDDEDDEDDDDDDDEDSGDSPESR 1004
                      557889999999*********************99888654 PP

  == domain 5  score: -22.8 bits;  conditional E-value: 7
  CENP-B_dimeris   27 eededeeddedddev 41  
                      +ed   +d ed+dev
      CCE27581.1 1133 DEDPIIDDAEDEDEV 1147
                      333333444444444 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0047        12      68     145 ..     324     399 ..     312     404 .. 0.68
   2 ?    4.8   0.2      0.01        26      32      85 ..     406     458 ..     400     514 .. 0.81
   3 ?   -0.7   0.1      0.52   1.3e+03      49      91 ..     683     732 ..     665     776 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0047
        Cnd1  68 eDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprl 145
                 +D +p+++a ++ al         +++ + p ++ +l   l + + ++++++l+ Ll+   +d+q+  + +++  prl
  CCE27581.1 324 RDIDPKIRAECVDALGSWILSL--PTVFMEPGYLRYLGWMLSDTNAQTRQEVLKQLLKVFRRDAQQLGHFIDRFRPRL 399
                 4566666666666666655554..344455666777777777777888888888888888888887778887777776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.01
        Cnd1  32 DedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaaltei 85 
                 D +  VR ta+ v+  L ++ m   ++ ++ + kl+ D++ r+++ +++++  +
  CCE27581.1 406 DLEVSVRVTAISVIDVLRSAAMLDPSE-IDAIGKLIFDSELRIRKAVVNFFVAC 458
                 666789999988888888888888777.***************99999999765 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.52
        Cnd1  49 ilndmvkekgflselakll.eDenprVvanalaalteisekse......n 91 
                 +++d+ k   +l+e+ +   + +++rV + a aa+  + + +e      +
  CCE27581.1 683 LRQDLGKFDRLLDEISTQFnRHDDKRVLSEATAAFLHVRQHDEveeltdS 732
                 55666666677777777775677889999999999888888643323322 PP

>> DUF1090  Protein of unknown function (DUF1090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.2   3.9e-05       0.1      19      57 ..     268     305 ..     257     310 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.9e-05
     DUF1090  19 aaKkqaIekqieaAkahgnqkrvagLekaLkevkanCtd 57 
                 +++ ++Ie+q++aAk  +n++++++ ++ L+e+ ++C++
  CCE27581.1 268 DRRIANIEQQLQAAKRSKNKAKTTEAQRSLTEA-NDCRK 305
                 578899******************999999998.46664 PP

>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.71   1.8e+03      14      46 ..     144     176 ..     142     179 .. 0.87
   2 ?   11.0   0.0   9.2e-05      0.24      37     114 ..     417     503 ..     400     507 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.71
                 TTHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH CS
       MIF4G  14 enfevlikqllklamdddknelkevielifeka 46 
                 ++ +++ +q l +++ddd ++l  ++++i++ a
  CCE27581.1 144 DSSDSISQQWLAKYKDDDAAALADLVNSIIQSA 176
                 566889999999*****9**********99865 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 9.2e-05
                 HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC.........-S-HHHHHHHHHHHHHHHHHHHHHHHH CS
       MIF4G  37 evielifekaveepsfsplyarlcgklnsrfqqnFrikllnklqeefekry.........eleneleenedgnrrrrlglvrflgel 114
                 +vi+ + + a+  ps + ++ +l+     r+++ +++ +++++   +e ++         ++ +e ee+++ n r+ + ++++l e 
  CCE27581.1 417 SVIDVLRSAAMLDPSEIDAIGKLIFDSELRIRKAVVNFFVACVADVLEGKKeqiggqevlDELDEVEEDDYENPRKEWVNIKCLAET 503
                 588889999***********************99******99999999999*********************************996 PP

>> Adeno_PV  Adenovirus minor core protein PV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.4   2.1       4.7   1.2e+04      19      64 ..      38      86 ..      23      95 .. 0.48
   2 ?   -0.8   0.1      0.19     5e+02     280     308 ..     572     599 ..     500     605 .. 0.73
   3 ?   12.2   0.0   2.1e-05     0.055      35      82 ..     810     857 ..     806     882 .. 0.90
   4 ?   -4.0   2.9       1.8   4.6e+03      44      50 ..     986     992 ..     952    1045 .. 0.67

  Alignments for each domain:
  == domain 1  score: -5.4 bits;  conditional E-value: 4.7
    Adeno_PV 19 ygppkkeeqdykprklkrvk...kkkkdddddelddevellhataprrr 64
                 g pk++ +++  + +        +k  d++d+ dd        apr r
  CCE27581.1 38 TGAPKRKRDEHDGQDVDSDEnglDNKTSDEEDNDDDAQSDGDHPAPRSR 86
                5556554444444333322200123333444444444444444566655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.19
    Adeno_PV 280 rprrsrkygtasallpeyalhpsiaptpg 308
                    rsr   ta a  pe a++ ++ap+p 
  CCE27581.1 572 SKSRSR-SKTAKASSPEVAFKMAVAPSPQ 599
                 334444.46899999**********9995 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 2.1e-05
    Adeno_PV  35 krvkkkkkdddddelddevellhataprrrvqwkgrrvrrvlrpgttv 82 
                 +r k   +dd+ del+dev  +   a +    wk r + r+l  gt++
  CCE27581.1 810 HRGKYEPQDDEIDELEDEVVTFAIKASQFYFMWKTRALARLLTSGTSL 857
                 56778889*************************************986 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 1.8
    Adeno_PV  44 ddddeld 50 
                 d+dd+ d
  CCE27581.1 986 DEDDDDD 992
                 2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1114  (0.062134); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.15u 0.32s 00:00:01.47 Elapsed: 00:00:00.50
# Mc/sec: 6979.71
//
Query:       CCE27582.1  [L=689]
Description: uncharacterized protein CPUR_01056 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-45  153.9   0.0      6e-45  152.9   0.0    1.5  1  POT1PC    ssDNA-binding domain of telomere protection protein
    1.1e-12   48.0   0.0    2.4e-12   46.9   0.0    1.6  1  POT1      Telomeric single stranded DNA binding POT1/CDC13


Domain annotation for each model (and alignments):
>> POT1PC  ssDNA-binding domain of telomere protection protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.0   6.7e-49     6e-45       1     154 [.     187     351 ..     187     352 .. 0.95

  Alignments for each domain:
  == domain 1  score: 152.9 bits;  conditional E-value: 6.7e-49
                 -GGG--SSSEEEEEEEEEEEE-..SS-EEEEEE-S---TTS--B-TTTSST......................T--S-SBS-EEEEEE-HHHHHHHTTT CS
      POT1PC   1 llkdvqegeffDligqvvkkasddsgkvvLyvwDgtenpnlfskvdpeesalegdeedvkgYetksdk.....kwigpfgkltlqitlydehaefaren 94 
                 +lkdvq+g+f+D ++qvv++++d ++k++L+++D+tenp +++++  +++  +  +  ++gY+t+s +      w+gp+gkl++qit+y++ha+ +r +
  CCE27582.1 187 ELKDVQDGKFVDTVAQVVREPYDLGDKITLWISDYTENPLFYQHQLMGSKGKHTYD--PYGYTTTSGAstsrsGWSGPLGKLSIQITCYEPHASAIRGE 283
                 59*********************************************999988887..********9999***************************** PP

                 .--TT-EEEEEEEEEEE-TTS.-EEEEE-SSTTG.CS--EEEEE......TTSGGGHHHHHHHHHHHH CS
      POT1PC  95 .lkpgdfvrLrNvhiklgrkgsklegflhggrky.grgikvlpl......endprlkellrrkreyek 154
                  + +g++v+LrN+++k+g++ ++legfl+g+r + g +i++++       ++  ++k++lrrk++yek
  CCE27582.1 284 rIMQGTWVFLRNLQVKYGQNMENLEGFLRGDRFAgGVKINISKEesldgeRTRVEVKNALRRKQQYEK 351
                 ********************************9955599999956789******************98 PP

>> POT1  Telomeric single stranded DNA binding POT1/CDC13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   2.7e-16   2.4e-12       8      99 ..      24     112 ..      16     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 2.7e-16
                 T.CTTEEEEEEEEEEEEEECCCSCCEEEEECCCCCTTTSCCHCTTTEEEEEEEECCCCCCCCGGCCCCEEECCCCEEEESTTSCECCSEEEEE CS
        POT1   8 e.aekkvvnviGvVidasfpkktggsdyvctfkivDpsknkgdendglrvvlFsknfedLpivkkvgdiirlhraklqsyngepqglanigfs 99 
                 + ++++ +++ GvV d+++p+ t+g+d++c  +i+D+s  +++++ ++++++F ++  d+p+  ++gd+i +  aklq+y+++ ++l++ +++
  CCE27582.1  24 KfHTGSLIHIAGVVTDFRAPIATRGTDWKCQMRIYDQS-VQDENDASISFNIFWPE-ADMPEA-RCGDVIIVFSAKLQNYQSA-YSLCTHKTT 112
                 458999********************************.*****************.88***8.*****************74.455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1111  (0.0619666); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4785.09
//
Query:       CCE27583.1  [L=552]
Description: probable importin alpha SRP1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-96  314.0  15.7    1.2e-13   50.6   0.0    8.3  8  Arm              Armadillo/beta-catenin-like repeat
    1.8e-25   89.2   2.6    1.9e-25   89.1   0.6    2.1  2  IBB              Importin beta binding domain
    3.9e-23   81.5   7.8    7.3e-09   35.9   0.1    6.5  6  HEAT_EZ          HEAT-like repeat
    1.9e-22   78.6   3.6    4.4e-22   77.4   3.1    1.9  2  Arm_3            Atypical Arm repeat
    1.3e-20   73.5   0.1    8.3e-09   35.7   0.0    5.6  4  HEAT_2           HEAT repeats
    3.4e-19   67.3   3.1    3.1e-05   23.9   0.0    7.7  9  HEAT             HEAT repeat
    1.2e-08   34.8   0.0      0.036   13.5   0.0    4.1  4  Arm_2            Armadillo-like
    2.2e-05   23.3   0.0     0.0038   15.9   0.0    2.8  3  Adaptin_N        Adaptin N terminal region
      3e-05   24.1   0.0        1.7    8.8   0.0    4.4  5  V-ATPase_H_C     V-ATPase subunit H
     0.0009   19.7   2.9       0.84   10.5   0.0    4.8  5  HEAT_PBS         PBS lyase HEAT-like repeat
     0.0017   18.4   0.0        3.2    7.8   0.0    3.0  3  Cnd1             non-SMC mitotic condensation complex subunit
     0.0019   18.4   4.2        2.4    8.4   0.0    5.1  6  RICTOR_V         Rapamycin-insensitive companion of mTOR, dom
  ------ inclusion threshold ------
      0.037   13.9   0.0        7.2    6.5   0.0    3.3  3  Glycos_trans_3N  Glycosyl transferase family, helical bundle 
      0.039   14.0   0.0        9.1    6.4   0.0    3.0  2  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
        6.6    6.4   6.4        9.6    5.9   6.4    1.2  1  NUSAP            Nucleolar and spindle-associated protein


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0     1e-13   1.2e-10       2      41 .]     114     153 ..     113     153 .. 0.97
   2 !   50.6   0.0     1e-16   1.2e-13       4      40 ..     158     194 ..     155     195 .. 0.96
   3 !   42.9   0.1   2.6e-14   3.1e-11       1      41 []     197     238 ..     197     238 .. 0.97
   4 !   25.1   0.0     1e-08   1.2e-05      11      41 .]     250     280 ..     242     280 .. 0.92
   5 !   31.1   0.0   1.4e-10   1.6e-07       1      40 [.     282     321 ..     282     322 .. 0.96
   6 !   47.9   0.2   6.8e-16   8.1e-13       4      41 .]     327     364 ..     324     364 .. 0.95
   7 !   47.4   0.2   9.6e-16   1.2e-12       2      40 ..     367     405 ..     366     406 .. 0.94
   8 !   31.9   0.1   7.8e-11   9.3e-08       2      39 ..     412     449 ..     411     451 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1e-13
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 ++++++vi+ G+v ++v++L+s+++ vq+eAawAL+N+a+
  CCE27583.1 114 NPPIEEVIKTGVVSRFVEFLRSPHTLVQFEAAWALTNIAS 153
                 789***********************************96 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 1e-16
                 HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++++vieaGavp++v+LL+s+ ++v+e+A+wAL+N+a
  CCE27583.1 158 QTQVVIEAGAVPIFVDLLDSPEPDVREQAVWALGNIA 194
                 89**********************************8 PP

  == domain 3  score: 42.9 bits;  conditional E-value: 2.6e-14
                 SHHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 +++++d+v  +Ga++pL++LL  s + +++++A+w+LsN ++
  CCE27583.1 197 SPQCRDYVLTCGALQPLLNLLGdSRKLSMLRNATWTLSNFCR 238
                 689************************************997 PP

  == domain 4  score: 25.1 bits;  conditional E-value: 1e-08
                 TTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  11 aGavppLvrLLssedeevqeeAawALsNLaa 41 
                 a a+p+L +L +s d+ev+ +A+wA+s+L++
  CCE27583.1 250 APALPVLAKLVYSLDDEVLIDACWAISYLSD 280
                 679**************************95 PP

  == domain 5  score: 31.1 bits;  conditional E-value: 1.4e-10
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 +++ ++avieaG+ ++Lv+LL + +++vq++A++ ++N+ 
  CCE27583.1 282 SNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIV 321
                 6889**********************************96 PP

  == domain 6  score: 47.9 bits;  conditional E-value: 6.8e-16
                 HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   4 nkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 +++++i++Ga+p L++LLss+++++++eA+w++sN++a
  CCE27583.1 327 QTQVIINCGALPCLLSLLSSTKDGIRKEACWTISNITA 364
                 89**********************************96 PP

  == domain 7  score: 47.4 bits;  conditional E-value: 9.6e-16
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                   +++av +a+++ppL++LL+++d ++++eA+wA+sN +
  CCE27583.1 367 TSQIQAVLDANIIPPLIHLLQNGDLKTRKEACWAISNAT 405
                 569**********************************76 PP

  == domain 8  score: 31.9 bits;  conditional E-value: 7.8e-11
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNL 39 
                 +e+ ++++++G+++pL++LL+++d ++ ++A+  L N+
  CCE27583.1 412 PEQLRYLVQQGCIKPLCDLLTCPDNKIIQVALDGLENI 449
                 78999********************************9 PP

>> IBB  Importin beta binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.6   1.6e-28   1.9e-25       1      90 []      10     103 ..      10     103 .. 0.91
   2 ?   -1.7   0.1       3.5   4.2e+03      60      85 ..     488     513 ..     478     517 .. 0.72

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 1.6e-28
                 XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXX...........XXXXXXXXXXXX-----TT--------HHHHH CS
         IBB   1 RlksfKnkgk.daeelRrrReeeqvelRKqkreeqllKrRnvaa.....eaaaeeeadseeeeeessaeekkleeleemvqgvnSddpelqleatq 90 
                 R+++fK+k++ ++eelRrrRee+qve+RK+kree+l+KrR +++      a+  +++ds+++  ++ +e++++ +l++mvq v+Sd+++lq+ +t+
  CCE27583.1  10 RRTQFKAKNTfKPEELRRRREEQQVEIRKAKREENLAKRRGIGTgenrpGASLGAAPDSDDD--TAPTESQLNADLPQMVQCVFSDQVDLQITGTT 103
                 99****************************************99998885555666677766..679999**********************9996 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.5
                 XXXXXXXXXXX-----TT-------- CS
         IBB  60 ssaeekkleeleemvqgvnSddpelq 85 
                 ++a+e   ++  +m+++ +Sd+ e+ 
  CCE27583.1 488 NNANEDIYMKAYNMIEKYFSDENENV 513
                 45566667778899999999998865 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   6.1e-12   7.3e-09       3      55 .]     140     193 ..     138     193 .. 0.93
   2 !    7.3   0.1    0.0059       7.1      30      54 ..     210     235 ..     208     236 .. 0.89
   3 ?    6.2   0.1     0.013        15      28      55 .]     251     278 ..     244     278 .. 0.89
   4 ?    1.0   0.0      0.54   6.4e+02      28      55 .]     293     320 ..     279     320 .. 0.84
   5 !   15.7   0.0   1.3e-05     0.016      29      55 .]     336     362 ..     335     362 .. 0.96
   6 !   13.5   0.0   6.3e-05     0.076      28      54 ..     377     403 ..     364     404 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 6.1e-12
     HEAT_EZ   3 vRraAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 v++ AawaL + + g + +++      ++p ++ lL +++++VR++A++aLgn+
  CCE27583.1 140 VQFEAAWALTNiASGSATQTQVVIEAGAVPIFVDLLDSPEPDVREQAVWALGNI 193
                 89*******99888888888888*****************************98 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0059
     HEAT_EZ  30 lpaLlalLnddsd.eVRaaAagaLgn 54 
                 l +Ll+lL d+ + +   +A ++L+n
  CCE27583.1 210 LQPLLNLLGDSRKlSMLRNATWTLSN 235
                 6689*********788*********9 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.013
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgnl 55 
                  +lp L++l  + +deV   A++a++ l
  CCE27583.1 251 PALPVLAKLVYSLDDEVLIDACWAISYL 278
                 5799999999999************975 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.54
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgnl 55 
                  i + L+ lL++ s +V++ A++  gn+
  CCE27583.1 293 GIPRRLVELLMHASTSVQTPALRSVGNI 320
                 567789************9999998886 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 1.3e-05
     HEAT_EZ  29 ilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +lp+Ll+lL++ +d +R+ A+++++n+
  CCE27583.1 336 ALPCLLSLLSSTKDGIRKEACWTISNI 362
                 69***********************97 PP

  == domain 6  score: 13.5 bits;  conditional E-value: 6.3e-05
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgn 54 
                  i+p+L+ lL++ + ++R+ A++a++n
  CCE27583.1 377 NIIPPLIHLLQNGDLKTRKEACWAISN 403
                 79***********************98 PP

>> Arm_3  Atypical Arm repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.7   4.4e+03       5      31 ..     329     355 ..     328     356 .. 0.79
   2 !   77.4   3.1   3.7e-25   4.4e-22       1      50 [.     468     518 ..     468     521 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.7
       Arm_3   5 lliEeagGldkIeaLQnheneeIYkkA 31 
                 ++i  +g+l ++  L ++  + I k A
  CCE27583.1 329 QVIINCGALPCLLSLLSSTKDGIRKEA 355
                 67778****999999988888776655 PP

  == domain 2  score: 77.4 bits;  conditional E-value: 3.7e-25
       Arm_3   1 npyalliEeagGldkIeaLQnheneeIYkkAlkIiekYFseeeee.ddeel 50 
                 n++al+iEe+gG++kI+++Qn+ ne+IY kA++ iekYFs+e+e+ d+++ 
  CCE27583.1 468 NRFALFIEECGGMEKIHECQNNANEDIYMKAYNMIEKYFSDENENvDEAMD 518
                 789***************************************887655444 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   6.9e-12   8.3e-09       4      85 ..     129     231 ..     126     234 .. 0.79
   2 ?    3.3   0.0     0.094   1.1e+02       3      68 ..     212     290 ..     210     293 .. 0.54
   3 !   17.5   0.0   3.3e-06     0.004       4      65 ..     298     371 ..     294     377 .. 0.79
   4 !   10.2   0.0   0.00066      0.79       1      56 [.     379     447 ..     379     460 .. 0.69

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 6.9e-12
      HEAT_2   4 LlqalendpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaLgaig..dpe.........alpaLkellddddd.dvv 79 
                 ++++l ++p++ v+ +a++aL +i++             a+p++v+ll++++p+vR++a++aLg i+  +p+         al+ L+ ll d ++ +  
  CCE27583.1 129 FVEFL-RSPHTLVQFEAAWALTNIASGsatqtqvvieaGAVPIFVDLLDSPEPDVREQAVWALGNIAgdSPQcrdyvltcgALQPLLNLLGDSRKlSML 226
                 78999.9***************998874555666665566**************************633355777778777999999999888875555 PP

      HEAT_2  80 ReaAae 85 
                 R+ A++
  CCE27583.1 227 RN-ATW 231
                 55.455 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.094
      HEAT_2   3 aLlqalendpdp.evrraairaLg.....rignp......ealpaLvellededpavRraaaeaLgai..gdpealpaLk 68 
                 +Ll++l  d+ +    r+a ++L      ++  p       alp L +l+ + d +v   a++a++ +  g+++ ++a  
  CCE27583.1 212 PLLNLL-GDSRKlSMLRNATWTLSnfcrgKMPQPdwstiaPALPVLAKLVYSLDDEVLIDACWAISYLsdGSNDKIQAVI 290
                 555555.3333313556666666633333222223433334577888888777778888888887777444577776665 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 3.3e-06
      HEAT_2   4 LlqalendpdpevrraairaLg......rignp.....ealpaLvellededpavRraaaeaLgai..gdpealp 65 
                 L+++l  ++++ v+  a+r+ g      +i+++      alp+L++ll++++  +R++a+++++ i  g+ + ++
  CCE27583.1 298 LVELL-MHASTSVQTPALRSVGnivtgdDIQTQviincGALPCLLSLLSSTKDGIRKEACWTISNItaGNTSQIQ 371
                 77888.899*************666665555558888899***********************999443444444 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00066
      HEAT_2   1 ldaLlqalendpdpevrraairaLg.....rignp.........ealpaLvellededpavRraaaeaLg 56 
                 +++L+ +l +  d ++r++a++a+      +++ p          +++ L +ll+++d  + + a + L 
  CCE27583.1 379 IPPLIHLL-QNGDLKTRKEACWAISnatsgSLQKPeqlrylvqqGCIKPLCDLLTCPDNKIIQVALDGLE 447
                 58899999.7899999999999999887773333333444444355888888888888777777777665 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0012       1.5       2      30 ..     126     154 ..     125     155 .. 0.91
   2 !   23.9   0.0   2.6e-08   3.1e-05       2      28 ..     168     194 ..     167     196 .. 0.95
   3 ?    0.5   0.0      0.86     1e+03       3      29 ..     211     238 ..     209     239 .. 0.69
   4 ?   -0.6   0.1       1.9   2.3e+03       2      28 ..     253     279 ..     252     282 .. 0.82
   5 ?    3.6   0.0     0.084     1e+02       5      29 ..     298     322 ..     294     323 .. 0.89
   6 !   12.0   0.0   0.00017       0.2       2      28 ..     337     363 ..     336     365 .. 0.94
   7 !    9.2   0.0    0.0013       1.5       1      26 [.     378     403 ..     378     408 .. 0.92
   8 ?   -2.5   0.0       7.9   9.4e+03       9      29 ..     427     451 ..     423     452 .. 0.68
   9 ?   -2.2   0.0       6.4   7.6e+03       3      16 ..     500     513 ..     499     513 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0012
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaev 30 
                 +  +++ l++p+  V   Aa+aL+++a++
  CCE27583.1 126 VSRFVEFLRSPHTLVQFEAAWALTNIASG 154
                 5678999********************97 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 2.6e-08
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 +P+++ ll +p+p+VRe A++aLg++a
  CCE27583.1 168 VPIFVDLLDSPEPDVREQAVWALGNIA 194
                 79***********************98 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.86
                 HHHHHHHT-SSHH.HHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspe.VReaAakaLgalae 29 
                  +ll+ll D+      ++A ++L ++++
  CCE27583.1 211 QPLLNLLGDSRKLsMLRNATWTLSNFCR 238
                 5678888775544357889999999986 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.9
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 lP+l kl  + + eV   A++a+  l+
  CCE27583.1 253 LPVLAKLVYSLDDEVLIDACWAISYLS 279
                 799999989999999999999998766 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.084
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 l++ll++ s +V   A++++g+++ 
  CCE27583.1 298 LVELLMHASTSVQTPALRSVGNIVT 322
                 89********************985 PP

  == domain 6  score: 12.0 bits;  conditional E-value: 0.00017
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 lP+ll+lls++   +R+ A++++ ++ 
  CCE27583.1 337 LPCLLSLLSSTKDGIRKEACWTISNIT 363
                 8***********************996 PP

  == domain 7  score: 9.2 bits;  conditional E-value: 0.0013
                 HHHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLga 26 
                 ++P+l++ll+  + + R+ A++a+ +
  CCE27583.1 378 IIPPLIHLLQNGDLKTRKEACWAISN 403
                 89*********************986 PP

  == domain 8  score: -2.5 bits;  conditional E-value: 7.9
                 HT-....SSHHHHHHHHHHHHHHHH CS
        HEAT   9 lsD....pspeVReaAakaLgalae 29 
                 l+D    p+ ++ + A+  L ++++
  CCE27583.1 427 LCDlltcPDNKIIQVALDGLENILK 451
                 3444444888888899999988876 PP

  == domain 9  score: -2.2 bits;  conditional E-value: 6.4
                 HHHHHHHT-SSHHH CS
        HEAT   3 PlllkllsDpspeV 16 
                 +++ k  sD++ +V
  CCE27583.1 500 NMIEKYFSDENENV 513
                 5788999***9987 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0     0.001       1.2      27      82 ..     138     194 ..     117     204 .. 0.82
   2 !    7.8   0.0    0.0017         2       6     144 ..     202     345 ..     197     346 .. 0.80
   3 !   13.5   0.0     3e-05     0.036       8     113 ..     331     441 ..     325     451 .. 0.77
   4 ?    4.0   0.0     0.024        28      49      89 ..     473     514 ..     468     519 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.001
       Arm_2  27 pliqeialltlgnsaaysvnq.diirdlggitiianllsksnaevkekalnalnnls 82 
                  l+q  a  +l+n a  s++q +++ + g ++i  +ll ++++ v+e+a+ al n +
  CCE27583.1 138 TLVQFEAAWALTNIASGSATQtQVVIEAGAVPIFVDLLDSPEPDVREQAVWALGNIA 194
                 55666777889999988888846899***************************9865 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0017
       Arm_2   6 devLepkelekllalLkssedpliqeialltlgnsaaysvnq.diirdlggitiianllsksnaevkekalnalnnlsenven..qkkikvyvnqvckd 101
                 d vL    l+ ll+lL  s++ ++ + a+ tl+n     + q d       ++++a+l+ + + ev   a  a+  ls+++++  q  i++ +++ + +
  CCE27583.1 202 DYVLTCGALQPLLNLLGDSRKLSMLRNATWTLSNFCRGKMPQpDWSTIAPALPVLAKLVYSLDDEVLIDACWAISYLSDGSNDkiQAVIEAGIPRRLVE 300
                 44599999**************************999888884555556789***********************999765541167789999988887 PP

       Arm_2 102 ivssplNsevQlagLklltnlsvtneyqh.llvs..yisellsLLs 144
                  ++    ++vQ  +L+ ++n+ + ++ q  ++++   +++llsLLs
  CCE27583.1 301 LLMH-ASTSVQTPALRSVGNIVTGDDIQTqVIINcgALPCLLSLLS 345
                 7654.5688************9999987524443236899999987 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 3e-05
       Arm_2   8 vLepkelekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnal.nnlsenvenqkkikvyvnqvck....d 101
                 +++   l  ll+lL s++d + +e+   +  + a  +   + + d  +i+ + +ll + + + ++ a  a+ n+ s + ++ ++++  v+q c     d
  CCE27583.1 331 IINCGALPCLLSLLSSTKDGIRKEACWTISNITAGNTSQIQAVLDANIIPPLIHLLQNGDLKTRKEACWAIsNATSGSLQKPEQLRYLVQQGCIkplcD 429
                 566777889**********977666655555566666677999***********************999993556788899********9998512224 PP

       Arm_2 102 ivssplNsevQl 113
                  +++p N  +Q+
  CCE27583.1 430 LLTCPDNKIIQV 441
                 556666666665 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.024
       Arm_2  49 iirdlggitiianllsksnaevkekalnalnnl.senvenqk 89 
                 +i++ gg+  i ++ ++ n+ ++ ka n++++  s+ +en++
  CCE27583.1 473 FIEECGGMEKIHECQNNANEDIYMKAYNMIEKYfSDENENVD 514
                 799***************************974266666654 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.2e-06    0.0038     122     298 ..     132     324 ..     125     334 .. 0.77
   2 ?    0.7   0.0      0.13   1.5e+02     270     302 ..     338     370 ..     333     400 .. 0.51
   3 ?    2.4   0.1     0.037        45     262     296 ..     413     451 ..     366     459 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.2e-06
                 HHT-SSHHHHHHHHHHHHHCCCC...CHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCC...HHHHHHHCCHHHHHHCS-HHHHHH.H CS
   Adaptin_N 122 llkdrspyvrkkAalailklykk...dpdllrkq.lveeikellsdkdpgvvlaAvalleeikkndrlll...kllpklvrrLcnllteldpwlqvk.i 212
                  l+++++ v+ +Aa a++ + +    + + + +   v+ +++ll++ +p v   Av +l  i   d   +    l     + L nll+++  +  ++  
  CCE27583.1 132 FLRSPHTLVQFEAAWALTNIASGsatQTQVVIEAgAVPIFVDLLDSPEPDVREQAVWALGNI-AGDSPQCrdyVLTCGALQPLLNLLGDSRKLSMLRnA 229
                 68999***************99844322333344589*************************.666665554557777777777777777777666524 PP

                 HHHHCC---SSHHHH.....HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST.HHHCCHHC.....HHHHHHSSCCTCHHHHHCHHHHHHHHX CS
   Adaptin_N 213 iklltrlarqepeersk...kellesllnllqssnnaVlletvnlivelapkne.livlavna.....LvrllsskdenlryvaLrtllkivkke 298
                   +l++ +r + ++++    +  l+ l +l++s  + Vl+ ++ +i +l++ ++ +i+++++a     Lv+ll +  ++++  aLr+   iv+ +
  CCE27583.1 230 TWTLSNFCRGKMPQPDWstiAPALPVLAKLVYSLDDEVLIDACWAISYLSDGSNdKIQAVIEAgiprrLVELLMHASTSVQTPALRSVGNIVTGD 324
                 56899****99999976556666666666666***************999887776666665444444********************9999876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.13
                 HCHHHHHHSSCCTCHHHHHCHHHHHHHHXXTTT CS
   Adaptin_N 270 naLvrllsskdenlryvaLrtllkivkkepkav 302
                  +L +llss + ++r  a+ t++ i   +++ +
  CCE27583.1 338 PCLLSLLSSTKDGIRKEACWTISNITAGNTSQI 370
                 344444444444444444444444444442222 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.037
                 ST....HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHH CS
   Adaptin_N 262 ne....livlavnaLvrllsskdenlryvaLrtllkivk 296
                  +    + + +++ L++ll+ +d+ +  vaL+ l  i+k
  CCE27583.1 413 EQlrylVQQGCIKPLCDLLTCPDNKIIQVALDGLENILK 451
                 33666555779*************999999999888876 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.11   1.3e+02      59     112 ..     140     193 ..     117     197 .. 0.75
   2 !    8.8   0.0    0.0014       1.7      47     113 ..     256     321 ..     250     324 .. 0.88
   3 ?    4.9   0.0     0.023        28      46     112 ..     297     362 ..     296     366 .. 0.83
   4 ?   -0.7   0.0       1.3   1.5e+03      47     109 ..     340     401 ..     330     406 .. 0.56
   5 ?    6.0   0.0     0.011        13      43     113 ..     423     506 ..     413     509 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.11
  V-ATPase_H_C  59 vlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112
                   v+  a+  ++++++   ++ +v+ + +a    ++ll++++++v+ +A  a+ ++
    CCE27583.1 140 VQFEAAWALTNIASGSATQTQVVIEAGAVPIFVDLLDSPEPDVREQAVWALGNI 193
                   455556667777777788889999999999999**************9988765 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0014
  V-ATPase_H_C  47 LiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkll 113
                   L+kl++ s d++vl  a+  i+ l +  +++ + + + ++  +++ell h+ ++v+  AL++v +++
    CCE27583.1 256 LAKLVY-SLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIV 321
                   667774.6678889999**********999999999***************************9987 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.023
  V-ATPase_H_C  46 kLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112
                   +L++ll  +++++v++ al  +g++v+  + + +v+ + +a   +++ll+++ + +++eA  +++++
    CCE27583.1 297 RLVELL-MHASTSVQTPALRSVGNIVTGDDIQTQVIINCGALPCLLSLLSSTKDGIRKEACWTISNI 362
                   788888.466777888899999999999999999999999999999999999999999999888776 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.3
  V-ATPase_H_C  47 LiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkav 109
                   L++ll+ s+++ +   a+  i++++    ++ + + + ++   +++ll++ d + ++eA  a+
    CCE27583.1 340 LLSLLS-STKDGIRKEACWTISNITAGNTSQIQAVLDANIIPPLIHLLQNGDLKTRKEACWAI 401
                   445552.33344444455555555555555555555556666666666666666666666555 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.011
  V-ATPase_H_C  43 llkkLiklleeskdktvlavalnDigelvkllpegkkvl..............eklkaKekimellehedeevkyeALkavqkll 113
                    +k L++ll +  d+++++val  +++++k  +  k++               e+ ++ eki e+ ++++e++ ++A + ++k+ 
    CCE27583.1 423 CIKPLCDLL-TCPDNKIIQVALDGLENILKIGDLDKQTAgdggdainrfalfiEECGGMEKIHECQNNANEDIYMKAYNMIEKYF 506
                   688899999.688999999999999999999777777776777777777777789999999999999999999999999888876 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.13   1.6e+02       1      14 [.     140     153 ..     140     175 .. 0.81
   2 !   10.5   0.0    0.0007      0.84       1      19 [.     182     202 ..     182     207 .. 0.84
   3 ?   -2.4   0.1       9.9   1.2e+04      17      27 .]     209     219 ..     209     219 .. 0.85
   4 ?   -0.7   0.0       2.8   3.3e+03       3      21 ..     227     256 ..     226     260 .. 0.70
   5 ?    1.6   0.0      0.53   6.3e+02      15      27 .]     376     388 ..     351     388 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHCTS CS
    HEAT_PBS   1 vRraAakaLgqlgd 14 
                 v+ +Aa+aL ++ +
  CCE27583.1 140 VQFEAAWALTNIAS 153
                 7889*****99987 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0007
                 HHHHHHHHHHHCTS..GGGHH CS
    HEAT_PBS   1 vRraAakaLgqlgd..eeaip 19 
                 vR  A++aLg++    +++ +
  CCE27583.1 182 VREQAVWALGNIAGdsPQCRD 202
                 8***********987777655 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 9.9
                 GHHHHHHHCTC CS
    HEAT_PBS  17 aipaLleaLqd 27 
                 a+++Ll++L d
  CCE27583.1 209 ALQPLLNLLGD 219
                 799***99976 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.8
                 HHHHHHHHHCTS...........GGGHHHH CS
    HEAT_PBS   3 raAakaLgqlgd...........eeaipaL 21 
                 r+A++ L ++               a+p+L
  CCE27583.1 227 RNATWTLSNFCRgkmpqpdwstiAPALPVL 256
                 789999999877666666666666666666 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.53
                 GGGHHHHHHHCTC CS
    HEAT_PBS  15 eeaipaLleaLqd 27 
                   +ip+L+ +Lq+
  CCE27583.1 376 ANIIPPLIHLLQN 388
                 679********96 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0027       3.2      30      90 ..     133     198 ..     121     226 .. 0.86
   2 ?   -0.5   0.0      0.93   1.1e+03      29      90 ..     301     367 ..     285     378 .. 0.67
   3 !    6.9   0.0    0.0049       5.8      21     132 ..     377     511 ..     351     519 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0027
        Cnd1  30 LkDedpyVRktaaivvakL.....ilndmvkekgflselaklleDenprVvanalaalteisekse 90 
                 L+ ++  V+  aa +++++      + ++v+e g +  + +ll+ ++p V++ a+ al +i+  s+
  CCE27583.1 133 LRSPHTLVQFEAAWALTNIasgsaTQTQVVIEAGAVPIFVDLLDSPEPDVREQAVWALGNIAGDSP 198
                 6667888899999999999998888889999***************************99987764 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.93
        Cnd1  29 rLkDedpyVRktaaivvakL.....ilndmvkekgflselaklleDenprVvanalaalteisekse 90 
                  L   +  V+  a+  v ++     i+ +++++ g l  l++ll+ +++ +++ a   +++i   ++
  CCE27583.1 301 LLMHASTSVQTPALRSVGNIvtgddIQTQVIINCGALPCLLSLLSSTKDGIRKEACWTISNITAGNT 367
                 4555556666666666666666666777777777788888888888888888877777777776654 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0049
        Cnd1  21 ylvepLrkrLkDedpyVRktaaivvakL.....ilnd...mvkekgflselaklleDenprVvanalaalteisekse..naiynllpdiisklsd... 106
                 ++++pL + L+  d   Rk a  ++++       +++   +  ++g ++ l +ll+ +++++++ al  l++i++ ++  +++     d i+++     
  CCE27583.1 377 NIIPPLIHLLQNGDLKTRKEACWAISNAtsgslQKPEqlrYLVQQGCIKPLCDLLTCPDNKIIQVALDGLENILKIGDldKQTAGDGGDAINRFALfie 475
                 4678999******************998666644444444577999****************************9954333344444555555555444 PP

        Cnd1 107 ..........alnecsewgqitilefLlsyipkdkq 132
                           ++n+++e+  ++ ++++ +y +++++
  CCE27583.1 476 ecggmekiheCQNNANEDIYMKAYNMIEKYFSDENE 511
                 444455444466667777777777887777777766 PP

>> RICTOR_V  Rapamycin-insensitive companion of mTOR, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0083       9.9       7      56 ..     145     194 ..     141     194 .. 0.83
   2 !    8.4   0.0     0.002       2.4       5      56 ..     185     237 ..     181     241 .. 0.83
   3 ?   -1.1   0.0         2   2.3e+03       8      40 ..     273     306 ..     270     321 .. 0.70
   4 ?   -0.0   0.0      0.89   1.1e+03      50      63 ..     339     352 ..     334     353 .. 0.84
   5 ?    4.2   0.2     0.043        52       4      39 ..     353     389 ..     350     418 .. 0.79
   6 ?   -1.0   0.0       1.8   2.1e+03       3      17 ..     394     408 ..     392     430 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0083
    RICTOR_V   7 LWaiGhigs.selGielldeydivedivelaeespvlslRGtafyvLglis 56 
                  Wa+ +i+s s    +++ e  +v+ +v+l  +sp   +R  a+++Lg i+
  CCE27583.1 145 AWALTNIASgSATQTQVVIEAGAVPIFVDLL-DSPEPDVREQAVWALGNIA 194
                 59999**995556666888889999999987.8999999999999999886 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.002
    RICTOR_V   5 aaLWaiGhigsselGie.lldeydivedivelaeespvlslRGtafyvLglis 56 
                 +a Wa+G+i+     ++ ++ ++ +++ +++l  +s  ls+   a + L+ ++
  CCE27583.1 185 QAVWALGNIAGDSPQCRdYVLTCGALQPLLNLLGDSRKLSMLRNATWTLSNFC 237
                 799******98666665599999**********99999999877777777666 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2
    RICTOR_V   8 WaiGhigs.selGielldeydivedivelaeesp 40 
                 Wai +    s+  i+ + e  i  ++vel ++++
  CCE27583.1 273 WAISYLSDgSNDKIQAVIEAGIPRRLVELLMHAS 306
                 8888887767788885556577777777776654 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.89
    RICTOR_V  50 yvLglissteegae 63 
                 + L+l+sst++g++
  CCE27583.1 339 CLLSLLSSTKDGIR 352
                 679*******9985 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.043
    RICTOR_V   4 KaaLWaiGhigs.selGie.lldeydivedivelaees 39 
                 K a W+i +i +  ++ i+ +ld  +i++ +++l ++ 
  CCE27583.1 353 KEACWTISNITAgNTSQIQaVLDA-NIIPPLIHLLQNG 389
                 8899******99556778856666.9999999998875 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 1.8
    RICTOR_V   3 lKaaLWaiGhigsse 17 
                 +K a Wai +  s  
  CCE27583.1 394 RKEACWAISNATSGS 408
                 69999***9998754 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.006       7.2       7      35 ..     133     161 ..     128     167 .. 0.88
   2 ?    1.5   0.0      0.23   2.8e+02      16      35 ..     353     372 ..     346     373 .. 0.92
   3 ?    0.9   0.0      0.34   4.1e+02       9      30 ..     387     409 ..     381     440 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.006
                      HHTT.---HHHHHHHHHHHHTTSS-HHHH CS
  Glycos_trans_3N   7 lrdgeeLtaeeirfaihgilkgevtdaqi 35 
                      lr+ ++L + e+++a++ i++g++t+ q+
       CCE27583.1 133 LRSPHTLVQFEAAWALTNIASGSATQTQV 161
                      6667899999***************9986 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.23
                      HHHHHHHHHHHTTSS-HHHH CS
  Glycos_trans_3N  16 eeirfaihgilkgevtdaqi 35 
                       e+ + i+ i+ g+ +++q+
       CCE27583.1 353 KEACWTISNITAGNTSQIQA 372
                      799*************9996 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.34
                      TT.--.-HHHHHHHHHHHHTTSS CS
  Glycos_trans_3N   9 dgeeL.taeeirfaihgilkgev 30 
                      ++++L t+ e+ +ai+  ++g++
       CCE27583.1 387 QNGDLkTRKEACWAISNATSGSL 409
                      44444399********9999975 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0076       9.1      39      68 ..     176     205 ..     147     241 .. 0.61
   2 ?    4.1   0.0      0.04        47       6      62 ..     314     368 ..     309     377 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0076
  Atx10homo_assoc  39 DdnnPfirewailairnLlegneenqelva 68 
                      D+ +P +re+a++a+ n+  ++++ +++v 
       CCE27583.1 176 DSPEPDVREQAVWALGNIAGDSPQCRDYVL 205
                      555566666666666666555555555543 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.04
  Atx10homo_assoc   6 vrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegnee 62 
                      +r +gn+v  +    + + ++++l+ +Ls  +  + ++ ir+ a ++i n++ gn  
       CCE27583.1 314 LRSVGNIVTGDDIQTQVIINCGALPCLLSLLS--STKDGIRKEACWTISNITAGNTS 368
                      67788888888777777888999999999765..67899**************9976 PP

>> NUSAP  Nucleolar and spindle-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.4    0.0081       9.6     257     295 .]      15      51 ..       3      51 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0081
       NUSAP 257 shkknyKQpklqtreerRekheqeRkqkkekvlgarRGl 295
                   k+++K  +l+ r  r e++++ Rk k+e+ l++rRG+
  CCE27583.1  15 KAKNTFKPEELRRR--REEQQVEIRKAKREENLAKRRGI 51 
                 35778888888766..44678999**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 3686.41
//
Query:       CCE27584.1  [L=1378]
Description: related to putative helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-17   62.5   0.7    4.5e-16   59.1   0.0    2.5  2  HA2          Helicase associated domain (HA2)
    3.5e-16   59.5   0.0    8.6e-16   58.3   0.0    1.7  1  Helicase_C   Helicase conserved C-terminal domain
    9.6e-14   51.5   0.0    2.1e-13   50.4   0.0    1.6  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    1.3e-10   41.3   0.1      4e-10   39.7   0.1    1.8  2  DEAD         DEAD/DEAH box helicase
    6.6e-07   29.6   0.1    1.5e-06   28.5   0.1    1.6  1  RWD          RWD domain
     0.0018   18.5   0.1     0.0059   16.8   0.1    1.9  1  dsRBD2       Double-stranded RNA binding domain 2
     0.0029   17.9   1.0      0.015   15.6   1.0    2.2  1  AAA_22       AAA domain
     0.0032   17.7   0.6       0.01   16.1   0.6    1.9  1  DND1_DSRM    double strand RNA binding domain from DEAD END P
      0.004   17.0   0.1      0.021   14.7   0.0    2.4  2  UBA          UBA/TS-N domain
  ------ inclusion threshold ------
      0.011   14.8   0.0      0.025   13.7   0.0    1.5  1  T2SSE        Type II/IV secretion system protein
      0.023   14.5   0.0      0.065   13.0   0.0    1.8  1  AAA_29       P-loop containing region of AAA domain
       0.03   14.8   3.4       0.17   12.3   0.0    2.6  2  AAA_23       AAA domain
      0.032   13.6   0.0      0.073   12.4   0.0    1.5  1  ATPase       KaiC
      0.037   13.6   0.0      0.085   12.4   0.0    1.5  1  AAA_25       AAA domain
      0.098   12.1   0.0       0.21   11.0   0.0    1.5  1  PhoH         PhoH-like protein
       0.67   10.5   9.2          1    9.9   0.2    2.8  2  IHABP4_N     Intracellular hyaluronan-binding protein 4 N-ter


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3      0.64   7.2e+02      43      93 ..     140     218 ..     125     228 .. 0.63
   2 !   59.1   0.0     4e-19   4.5e-16       1      78 [.    1048    1127 ..    1048    1171 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.64
         HA2  43 leegcldevitivAalsveeifleeneeekeeeee........................e....eekakkkrkeeekar 93 
                  ++  + +++  v+ ++ + ++l++++++  ++ +                        e    +++a+kkr+e e+ r
  CCE27584.1 140 AKHAAATYALFRVCSMQNKHMVLPPDHKSLWKDFQalkkedvkegraslydadpfkalqEkleaKAAAEKKRRELEQTR 218
                 4566777777788888888888888877777666677777777777777666655544313433333333333333333 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 4e-19
         HA2    1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeee.....e 78  
                  A++lL ++gALd   +lT++G+++a+lP + r++k+++++a +  gcld+++t +A+ls++++fl+++e+++e +++     +
  CCE27584.1 1048 AIKLLRRMGALD-GDELTAMGQQLAMLPADLRCGKLMVYGAIF--GCLDDCVTTAAILSTRSPFLSPQEKRDEARQArlrfcT 1127
                  899********8.59*************************888..***********************887665543444440 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   7.6e-19   8.6e-16       4     110 ..     859     984 ..     856     985 .. 0.91

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 7.6e-19
                 HHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH.... CS
  Helicase_C   4 eallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv.... 97 
                 +a+ ++l+  ++ g ilif++ + ++++ +++l++  +++v++lh++l+++e+++++++   g+++v++at+vae++i+i+++ +Vi+ +  +++    
  CCE27584.1 859 KAIDYELSYDKKPGGILIFLPGVGEINHaCNYLRSIPSLHVLPLHASLETREQKRVFSSAPPGKRKVVVATNVAETSITIDDIVVVIDSGKVKETsfda 957
                 56667777889999**********998899***6666***************************************************99998877888 PP

                 ..............HHHHHHHTTSSST CS
  Helicase_C  98 ..............tsyiqriGRtgRa 110
                               + ++qr+GR+gR+
  CCE27584.1 958 ssnmrrleetwasrAACKQRRGRAGRV 984
                 88899999999999************7 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   1.9e-16   2.1e-13       1      83 []    1208    1309 ..    1208    1309 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1.9e-16
                   HHHHHHHHHTTCEEE.................EEETTCCEEETT.TCEEEEE-TTSTTTT.T...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHH CS
  OB_NTP_bind    1 lraillaGlypqiar.................kdpskkdyktar.tktrvfihpsSvlak.nekekepewvvytelvettklylrdltaidpawLl 77  
                   lra++++++ pqiar                  dp+ k  k    ++ rvf+hp S++++ +  + +  ++ y ++++t+k ++rdlt+ +  +Ll
   CCE27584.1 1208 LRALIASAFTPQIARiqypdkkyvssmsgakeLDPEAKAIKYFNqENGRVFVHPGSTVFDsQGFSGNAMYMSYFSIISTSKIFIRDLTPFNVFTLL 1303
                   79************54444444444444433366666665555335*************9888888888*************************** PP

                   HHSTTT CS
  OB_NTP_bind   78 lfagqi 83  
                   lf+g i
   CCE27584.1 1304 LFSGPI 1309
                   **9975 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.5   6.2e+03      64     112 ..     495     550 ..     488     559 .. 0.65
   2 !   39.7   0.1   3.6e-13     4e-10       5     170 ..     618     780 ..     614     785 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.5
                 HHHHHHHTTTSTSEEEEEETTSSHHHHHHHH.......HTTCSEEEEEHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxx RF
        DEAD  64 lnnlkkfkkyidlrvlliiggvaardqlskl.......dngvdivvgtpgrlddll 112
                 + +l +++k   +r  l + +++ rd+  k+       +++++ ++ +pg l+d+ 
  CCE27584.1 495 MAKLPSYIKLSIVRQALAYMEESLRDEPMKIylvldwiQQNINGIIENPGNLVDIS 550
                 55555555543355666677777777777776666655688999999999999965 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 3.6e-13
                 HHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHH.HHHTTTSTSEEEEEETTSSHHHHHHHHH...TT.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx.. RF
        DEAD   5 aeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnl.kkfkkyidlrvlliiggvaardqlskld...ng.. 97 
                 +++++++ + +  ++++eTGsGK++  +  +l+ +y+++  +   +++  P r  a   ++++ +++++ ++ +v   i g+++++  +k+     g  
  CCE27584.1 618 EQIVNTVRDHHVTIISGETGSGKSTQSVQFILDDLYSKELGNCANMIVTQPRRISALGLADRVaEERCSRVGDEVGYAIRGESRQSRDTKITfvtTGvl 716
                 67777888888999***********************9999999****************999456677788777777888777666666633214455 PP

                 CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 ++ + +  gr+dd++s     l +v+ +++DE+++ + +   df+ ++++++ +   d  l+  +i++SATl 
  CCE27584.1 717 LRRLQTSGGRVDDVVS----ALADVSHVIIDEVHERSLD--TDFLLNLIREVMRRDRDM-LK--LILMSATLD 780
                 6666666688888886....399***********87766..567666666663333332.44..*******98 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   1.3e-09   1.5e-06       1     116 []     429     536 ..     429     536 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.3e-09
                 HHHHHHHHHHHHHSTTTCCCCHT--EE--S-EEEEEEECECCCC....TT-CEEEEEEEEE-SSTTSS--EEEEEECCSS-HHHHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD   1 eeqeqEleaLesIypdefevienenysikleikikldededeedsefeekkkpslkleiklpeeYPeeaPiislsstenlpkeqvksleekleelaeen 99 
                 e++++E+++Le++y++ f + + e  s    ik++  ++  ++    ++  +++ +l+++ p +YP  + ii++ ++   p + ++s+ ++   ++ee 
  CCE27584.1 429 EQWNEEVSSLEAMYGEGFRRNSPESIS----IKVDAVKNAAQNG---QNGGEVETYLQVRRPASYPRHL-IIAIMAKL--PSYIKLSIVRQALAYMEES 517
                 789***************999987777....6666666666554...5899***************998.89999876..9999999999999999999 PP

                 .TTS--.CHHHHHHHHHHH CS
                 .xxxxx.xxxxxxxxxxxx RF
         RWD 100 .lgepv.ifalidwlkenl 116
                    ep+ i+ + dw+++n+
  CCE27584.1 518 lRDEPMkIYLVLDWIQQNI 536
                 85566559********985 PP

>> dsRBD2  Double-stranded RNA binding domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   5.2e-06    0.0059      25      79 ..      66     120 ..      61     179 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.2e-06
      dsRBD2  25 snWrGsfPrelLcsfCrqhrLsePvfsissapvksssellrsakklkdseskeke 79 
                 s+W G++P +lL+++C++++   P +++ ++p   s  ++ sak lk++e+++ e
  CCE27584.1  66 SSWTGKLPVNLLSEYCQKQKWERPEYDTRKTPEGFSVWVTLSAKDLKTQEMTKLE 120
                 79******************************99999999999999999988765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.0   1.3e-05     0.015       5     128 ..     627     775 ..     624     782 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee..erpevv...fvtlpsstsskdllrellralglelka.....................erlssee 77 
                 + ++++ Ge+G+GK+t   ++   +   +   e  +++  +      +++++  + +++e ++ +g+e  +                        +++ 
  CCE27584.1 627 HHVTIISGETGSGKSTQSVQFILDDLYSK---ElgNCANMIvtqPRRISALGLADRVAEERCSRVGDEVGYairgesrqsrdtkitfvttgvLLRRLQT 722
                 56899***********8888887764332...2344444442232222222233333555555555444446666888777777777776665556777 PP

      AAA_22  78 llealeqalraravielliiDEaqhlr..seealeeLrsllnlsrkgvqliLv 128
                    ++ + ++a a+++ +iiDE++  +  ++ +l+ +r+ +  +r+ ++liL+
  CCE27584.1 723 SGGRVDDVVSALADVSHVIIDEVHERSldTDFLLNLIREVMRRDRDMLKLILM 775
                 77777777777777999*******96333699999997776666999999997 PP

>> DND1_DSRM  double strand RNA binding domain from DEAD END PROTEIN 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.6   9.1e-06      0.01       3      26 ..      73      97 ..      71     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.1e-06
   DND1_DSRM  3 avqlLeelCeknkwgsPvYelhs.e 26
                +v lL e+C+k+kw +P+Y + +  
  CCE27584.1 73 PVNLLSEYCQKQKWERPEYDTRKtP 97
                6899***************998733 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.9e-05     0.021       3      37 .]     290     323 ..     288     323 .. 0.88
   2 ?   -3.2   0.0       7.8   8.8e+03       4      17 ..     433     449 ..     432     449 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   3 eeaiqrLveMGFdreevveALratgnNeErAveyL 37 
                 e+ +++L  +GF r++vveA ++++ + E  +e+L
  CCE27584.1 290 EAIVADLAKLGFRRNHVVEAVEYCK-DREETLEWL 323
                 8899********************9.777777776 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.8
                 HHHHHHHHT...TS-HH CS
         UBA   4 eaiqrLveM...GFdre 17 
                 e ++ L +M   GF r+
  CCE27584.1 433 EEVSSLEAMygeGFRRN 449
                 77999999997788775 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.2e-05     0.025     117     145 ..     615     643 ..     588     660 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.2e-05
       T2SSE 117 kiaevlrkavrerglilvsGgTgsGKttl 145
                 +++e + + vr + + ++sG TgsGK+t 
  CCE27584.1 615 QMREQIVNTVRDHHVTIISGETGSGKSTQ 643
                 6778888899*****************96 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.8e-05     0.065      11      37 ..     616     642 ..     607     649 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.8e-05
      AAA_29  11 tfdghtieidlkgatlltGpsGsGKST 37 
                   ++ + +++ + +t+++G++GsGKST
  CCE27584.1 616 MREQIVNTVRDHHVTIISGETGSGKST 642
                 44444444554559************9 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   1.8      0.48   5.4e+02     141     196 ..     156     218 ..      79     223 .. 0.62
   2 ?   12.3   0.0   0.00015      0.17      18      34 ..     626     642 ..     616     644 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.48
      AAA_23 141 erfeefelkdkkerleelekelee..ledekkllekl.....eqekekekeleeleeeleeil 196
                 +++++ +  d k+ +++++  ++e  +e +++l ++      ++++e +++ e++++ele++ 
  CCE27584.1 156 QNKHMVLPPDHKSLWKDFQALKKEdvKEGRASLYDADpfkalQEKLEAKAAAEKKRRELEQTR 218
                 445555555555566666666555223345555444466554666667777777777777765 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00015
      AAA_23  18 skgltlItGpNGaGKTT 34 
                 ++ +t+I+G++G+GK+T
  CCE27584.1 626 DHHVTIISGETGSGKST 642
                 689*************9 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.5e-05     0.073      17      44 ..     625     652 ..     615     664 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.5e-05
      ATPase  17 pegrvvlitGepGtGKtifalqFlikga 44 
                  + +v+ i+Ge+G+GK++ + qF++  +
  CCE27584.1 625 RDHHVTIISGETGSGKSTQSVQFILDDL 652
                 67899*******************9765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.6e-05     0.085      22     151 ..     617     745 ..     607     750 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.6e-05
      AAA_25  22 rrwlvkgllpagelallaGapgtGKttlaldlalavatGkpwlg....pvapeqgkVlyvsaEdsedelrrRlravgeal..........rddarllvl 106
                 r+++v  + + ++++++ G +g+GK+t  ++  l+ +  k++ g     +++++++   + + d+    ++R ++vg ++          +  ++  ++
  CCE27584.1 617 REQIVNTV-RDHHVTIISGETGSGKSTQSVQFILDDLYSKEL-GncanMIVTQPRRISALGLADRV--AEERCSRVGDEVgyairgesrqS--RDTKIT 709
                 56666666.58***********************99955544.55776456788998899988888..99999999999977777777433..333333 PP

      AAA_25 107 dlagveslpLfakdrggtlltadvdaleaaieevegvrlvviDpl 151
                  + +   + L+       +l+    ++++++ + ++v +v+iD +
  CCE27584.1 710 FVTTG--VLLR-------RLQTSGGRVDDVVSALADVSHVIIDEV 745
                 33222..2222.......233334457778888888999999976 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019      0.21       9      57 ..     617     668 ..     612     684 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
                 HHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT...TS-SEEEEEE- CS
        PhoH   9 QkeylealkkndivfaiGpaGtGKtylavalavealkk...kkvkriiltrp 57 
                  +++++++++++++++ G++G+GK+  +v+  ++ l +   +++ ++i+t+p
  CCE27584.1 617 REQIVNTVRDHHVTIISGETGSGKSTQSVQFILDDLYSkelGNCANMIVTQP 668
                 57899************************99999887722334566777776 PP

>> IHABP4_N  Intracellular hyaluronan-binding protein 4 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   3.9       0.2   2.2e+02      46      89 ..       4      45 ..       2      99 .. 0.56
   2 ?    9.9   0.2   0.00092         1      20      59 ..     190     229 ..     187     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.2
    IHABP4_N 46 enkgkrkagpkgaksaakaaaakagkkesqkerkkpkkegeeqp 89
                + k+k+++ p++++saa a+  k + k+   ++kk++k++ e +
  CCE27584.1  4 KGKAKAEQQPAQTRSAAAAG--KDASKDGAGKSKKAPKDKVETA 45
                44556666666777766444..4445554433333334333322 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00092
    IHABP4_N  20 esDPfdiLreaekkkeekkkkkreekenkgkrkagpkgak 59 
                 ++DPf +L+e+ ++k++ +kk+re ++  +k+k+ p++a 
  CCE27584.1 190 DADPFKALQEKLEAKAAAEKKRRELEQTRAKAKEMPGAAG 229
                 68*********99999988888887778888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.46
# Mc/sec: 9013.91
//
Query:       CCE27585.1  [L=266]
Description: uncharacterized protein CPUR_01059 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-14   53.5   0.4    2.4e-07   31.2   0.2    2.3  2  DcpS_C    Scavenger mRNA decapping enzyme C-term binding
    7.4e-14   52.3   2.1    3.6e-13   50.1   2.1    1.9  1  HIT       HIT domain
    8.2e-12   45.4   0.2    2.4e-11   43.9   0.2    1.9  1  zf-C2HE   C2HE / C2H2 / C2HC zinc-binding finger
  ------ inclusion threshold ------
       0.86    7.6   3.8        1.1    7.2   3.8    1.1  1  DUF5401   Family of unknown function (DUF5401)


Domain annotation for each model (and alignments):
>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.3e-07   0.00059      13      65 ..      44      98 ..      40     119 .. 0.77
   2 !   31.2   0.2   5.4e-11   2.4e-07      80     114 .]     167     201 ..     138     201 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.3e-07
                -B-EEEE-SSEEEEE-SS-SSSEEEEEEESS.---SGGG--T.TTTTHHHHHHHH CS
      DcpS_C 13 pervvyedekfvvlkDikpkaklhllvipkr.dikslrdLtk.ehlpllkemrek 65
                p+++++++ +fv++ D+ pk+++h l +p++   + l+++++ ++ + l++++++
  CCE27585.1 44 PNTIIFQNADFVAIHDKFPKSTIHTLLLPRSpAHNLLHPFEAfQDEQFLRQVQQQ 98
                7899***************************655556666432455566655555 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 5.4e-11
                 EEE--SCCCT--S-S--EEEEE........SS--- CS
      DcpS_C  80 eelrvgvhyqPsvyhlHlHvisldfespglkrkkh 114
                  e+  gvh+ Ps++hlH+Hv+s d+ s+ +k++kh
  CCE27585.1 167 AEVISGVHAVPSMSHLHIHVLSRDMHSESMKHRKH 201
                 57788***************************998 PP

>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   2.1   8.1e-17   3.6e-13       5      97 ..      44     191 ..      43     192 .. 0.90

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 8.1e-17
                 -CCEEEE-SSEEEEE-SS-SSSSEEEEEESS.TGCSGGGCC........HHHHHHHHHHHHHHHHHHHTCT............................ CS
         HIT   5 pstvvyeddlvlafldidpkapghlLvipkk.hlselhdlt........eeelakllsavkkvakalqkkf............................ 66 
                 p+t+++++ +++a++d++pk+ +h+L++p+    + lh+++         + ++++  + + vak+lq+++                            
  CCE27585.1  44 PNTIIFQNADFVAIHDKFPKSTIHTLLLPRSpAHNLLHPFEafqdeqflRQVQQQVAYLKTLVAKELQRRLgryssaerarqavldgegevdaeekvee 142
                 6899***************************6677789**9888877777777778888888888888888**************************** PP

                 ..................TCCCEEEEEEESGGGT-SSSS-EEEEEEC-T CS
         HIT  67 ..................knkglrvvinngahagqsvahlHiHviprre 97 
                                     +  +  +  g ha++s+ hlHiHv++r+ 
  CCE27585.1 143 veedacegrrvlepgalpPGRDWEAEVISGVHAVPSMSHLHIHVLSRDM 191
                 ******************44677888999*****************996 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.2   5.3e-15   2.4e-11      32      62 ..     230     260 ..     184     262 .. 0.73

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 5.3e-15
     zf-C2HE  32 lilktpLkCtrCganfgnkfpkLKeHLeeef 62 
                   l+++L+C+rCg+ fgn f+kLKeHLeeef
  CCE27585.1 230 RELSSELRCWRCGRGFGNGFKKLKEHLEEEF 260
                 4489**************************9 PP

>> DUF5401  Family of unknown function (DUF5401)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   3.8   0.00025       1.1     286     342 ..      85     142 ..      81     156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00025
     DUF5401 286 rqqqekfekmeqerlrqekeekarelerrr.kleeaekarqaeldrqaaiyaeqerla 342
                   q+e+f +  q+++   k   a+el+rr  +   ae+arqa ld +  + ae++   
  CCE27585.1  85 AFQDEQFLRQVQQQVAYLKTLVAKELQRRLgRYSSAERARQAVLDGEGEVDAEEKVEE 142
                 56999**********************99538999***********999999876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2018.19
//
Query:       CCE27586.1  [L=198]
Description: uncharacterized protein CPUR_01060 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.068   12.6   9.5      0.084   12.2   9.5    1.2  1  CDC27          DNA polymerase subunit Cdc27
       0.31    9.8   2.7       0.36    9.6   2.7    1.1  1  Nucleo_P87     Nucleopolyhedrovirus capsid protein P87
       0.66    8.6   2.6       0.68    8.5   2.6    1.2  1  Hamartin       Hamartin protein


Domain annotation for each model (and alignments):
>> CDC27  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   9.5   1.4e-05     0.084     129     270 ..      41     186 ..       8     195 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
       CDC27 129 vkraeel....grpplaapaseakektangkkpkaakekaaketssakseskkksaekskdaskettkekaekaasskaaslkkkasaksnimksffka 223
                 v +a+ +      +p++a+ ++  ++  +  +pk   ++aa+++++ k+++++++a++s+  + +      +   +++ a    ++++     +  + a
  CCE27586.1  41 VTKAYVPtgrpRGRPPSANPKAYVPTGRPRGRPKGSGKSAAEKKTPTKAAAAAAAAAASTTGTPARRGRPRKVLVEVADAAIPEETPKRRPGRPRRSTA 139
                 555554421111223333333444555555556667788888888888888888888888888888888888888888888887889999999999999 PP

       CDC27 224 kpaekkkkteakeqkveeeseeekekedkeleddsaaeeeeeeekst 270
                 ++a++ +kte+ eq v+ e e+++ + +++++ ++   +e  ee++t
  CCE27586.1 140 AAAAAVAKTEEVEQVVKVEEEDQDVDAEDAEDAEDVEVAERIEEDVT 186
                 99999999999999999998888877777744444434444444443 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.7     6e-05      0.36     332     440 ..      82     184 ..      40     191 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 6e-05
  Nucleo_P87 332 slqsPaqtpawqtpattptretssdteaiksepektleeklreklpsdlsaqssvpdkkseasavlptekrkRrrarklqelssdededssdekevDke 430
                 + ++P+++    + a++ +  +++ t+a++  p k l e     +p +++++   + ++s a a  +++ +k   +++  ++++++++ + ++ e  ++
  CCE27586.1  82 EKKTPTKA----AAAAAAAAASTTGTPARRGRPRKVLVEVADAAIPEETPKRRPGRPRRSTAAA--AAAVAKTEEVEQVVKVEEEDQDVDAEDAEDAED 174
                 44555443....4455556666677899*********************998877777666666..457889999999999999999988888888888 PP

  Nucleo_P87 431 kerkRRreeD 440
                  e   R eeD
  CCE27586.1 175 VEVAERIEED 184
                 9999999998 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.6   0.00011      0.68     363     457 ..      86     178 ..       7     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00011
    Hamartin 363 skvsstpeaagkatpetTPakssrklppslsesavvvalpassrksspprkdeksesskpdlskqeevenekeleeslkskssvtlseLsdvike 457
                  +    ++aa+ a++++TPa+  r  p++   + + +a+p+++ k  p r  +++  +   ++k eeve+  ++ee+ ++ ++ + ++ +dv+  
  CCE27586.1  86 PTKAAAAAAAAAASTTGTPARRGR--PRKVLVEVADAAIPEETPKRRPGRPRRSTAAAAAAVAKTEEVEQVVKVEEEDQDVDAEDAEDAEDVEVA 178
                 23334445557788889*****99..899999999999***998888888888889999999999999999999988887666666665554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1295  (0.0722293); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 1530.98
//
Query:       CCE27587.1  [L=607]
Description: related to kinesin-like protein kif1c [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.5e-114  382.4   0.0   2.3e-114  381.8   0.0    1.3  1  Kinesin      Kinesin motor domain
      3e-24   85.6   0.4    6.9e-24   84.5   0.0    1.8  2  Microtub_bd  Microtubule binding
  ------ inclusion threshold ------
      0.031   13.2  11.3      0.055   12.3  11.3    1.4  1  Spc7         Spc7 kinetochore protein
       0.17   11.9   6.5       0.75    9.8   0.0    3.1  3  DUF87        Helicase HerA, central domain
        0.2   12.5   1.7       0.47   11.3   1.7    1.6  1  Tau95        RNA polymerase III transcription factor (TF)IIIC
       0.29   11.0   0.9         20    5.0   0.0    2.6  2  Noggin       Noggin
        0.3   11.4   2.5       0.25   11.6   0.2    2.1  2  MLANA        Protein melan-A
        1.5    9.8   7.1        6.3    7.8   3.7    2.7  2  DUF2018      Domain of unknown function (DUF2018)
        2.2    9.0  12.8         13    6.5   5.0    3.3  2  YabA         Initiation control protein YabA
        2.5    8.3  10.1       0.28   11.4   0.9    3.0  3  Cnn_1N       Centrosomin N-terminal motif 1
        3.4    7.2  10.8        1.5    8.4   8.0    1.9  2  HAUS6_N      HAUS augmin-like complex subunit 6 N-terminus


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.8   0.0  1.4e-117  2.3e-114       1     333 []      54     407 ..      54     407 .. 0.95

  Alignments for each domain:
  == domain 1  score: 381.8 bits;  conditional E-value: 1.4e-117
                 EE-SSSHHHHTTTTEBCEEEEC..........TCTCEEEEEEEEECTTSCEEEEESEEEETTS-.......HHHHHHHHHHHHHHHHHTTSEEEEEEEE CS
     Kinesin   1 RvRplnekekeeeeeeevevee..........ekkeeekkskkenkeeeekkfkFdkvfdeeat.......qeevyeetakplvesvleGynatifaYG 82 
                 RvR + ++e e+++++ v+++            +++ +++  k++k  e+kkf+Fd+ f++++        qeevy+++ ++++++ +eGy+++ifaYG
  CCE27587.1  54 RVRAFLPREIEKKTRCLVHMDPmtqlttlrapDQDAADSTMFKSRKVMEDKKFTFDSSFWSHDIrdahyahQEEVYNSLGEEFLDHNFEGYHTCIFAYG 152
                 99**************999988999****9998888999999999****************9878899999**************************** PP

                 STTSSHHHHHTBCTTTSBSHHHHHHHHHHHHHHHCT.TTHEEEEEEEEEEEEEETTEEEETTSTTT.TSTSSEBEEEECTTSCCEEETTS--EEESSHH CS
     Kinesin  83 qtgsGKTyTmegkeeeeeGiipraleelFesikkek.eekekefsvkvsylEiYneeiyDLLeskk.skkkkklkiredskkgevyvkgltevevksae 179
                 qtgsGK+yTm+g+  +++G+ipr++e+lFe+i++ + e+++  ++v+vsy+E+Yne+++DLL +   +   + lkire++++g  yvk+ltev v+s++
  CCE27587.1 153 QTGSGKSYTMMGT-PDQPGLIPRTCEDLFERIDAAHsEDSNIAYNVRVSYFEVYNEHVRDLLVPVVpNAPPHYLKIRESPTEG-PYVKDLTEVPVRSID 249
                 ************9.899***************98651456889********************9974455569********98.*************** PP

                 HHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTC.EEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
     Kinesin 180 evlellekgeknrkvaetklneeSSRSHavftitleqknlkeete.ekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaek 277
                 e+l+++++g+++r++a+tk+n++SSRSHavfti+l+q +++ +t+ ++ ++s++ LvDLAGsEra++t+ a+g rl+E++niNkSL++Lgrvi+aLa++
  CCE27587.1 250 EILRWMKNGDQSRTTASTKMNDTSSRSHAVFTIMLKQIHHDMDTDeTTERSSRIRLVDLAGSERAKSTE-ATGARLREGSNINKSLTTLGRVIAALADP 347
                 ****************************************9999955699*******************.5899************************* PP

                 ......CCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 278 ......kkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                       k+++++pYRdS LT+lL+dsLgGnskt+mi+++ p+  +++etlstl++a++ak+i
  CCE27587.1 348 kalrsgKRKDVVPYRDSILTWLLKDSLGGNSKTAMIACIAPA--DYDETLSTLRYADQAKRI 407
                 *****************************************7..99**************97 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   4.2e-27   6.9e-24      20     149 .]      47     213 ..      42     213 .. 0.80
   2 ?   -3.1   0.1         4   6.5e+03      54      54 ..     458     458 ..     407     489 .. 0.51

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 4.2e-27
                  TB-EEEEEEECCCS-T.............EEEETTT.......................TTTEEEE-SEEEECTT.......HCCCCCCCC.HHHHHH CS
  Microtub_bd  20 GniRvfarvrpelesek............akikfpe....................eekkkkkefsFdrvfeses.......eqeevfeei.sqlvqs 77 
                  Gn+ v +rvr  l +e             +     +                    ++  ++k+f+Fd  f s+        +qeev++ + + +++ 
   CCE27587.1  47 GNVKVVVRVRAFLPREIekktrclvhmdpM-----TqlttlrapdqdaadstmfksRKVMEDKKFTFDSSFWSHDirdahyaHQEEVYNSLgEEFLDH 139
                  788888888888877655555544333320.....13444445556777788888888899**********8887777778899999999856899** PP

                  HHTT--EEEEEEES................ST-HCHHHHHHHHHHCCTS..CCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  78 aldgynvcifaygqTGsGKtyTmegeeeeagmipraveeifetiselke..kgwkyeielqfveiynekvqDlL 149
                   ++gy++cifaygqTGsGK+yTm+g+ +++g ipr+ e +fe i   ++   ++ y++++++ e+yne+v+DlL
   CCE27587.1 140 NFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFERIDAAHSedSNIAYNVRVSYFEVYNEHVRDLL 213
                  ******************************************987654423899*******************8 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4
                  - CS
  Microtub_bd  54 F 54 
                  +
   CCE27587.1 458 L 458
                  1 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3  11.3   3.4e-05     0.055     198     297 ..     410     512 ..     389     520 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.4e-05
        Spc7 198 keeLeelreelaelkaeieekkkelaelqeqle...eleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleeltgwkivslsgst 293
                 ++ +++ + + ae +a+i++  +e+  lq  +    ++e++  e++e+ +e+++++a  +r++ee+ ++ es +++l++e +al+  ++++i sl+++ 
  CCE27587.1 410 RAVVNQDQISTAERDAQIAAMAEEIRVLQLSVSdsrQKEKSAMEAEERLEEYQNRVATMQRMMEERSMVAESKIKKLQTENEALKLHLKLAIESLKNPI 508
                 56667777777888888999999988888666511155666778999***********************************************99876 PP

        Spc7 294 lelt 297
                   ++
  CCE27587.1 509 PAVS 512
                 5555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00046      0.75      25      40 ..     145     162 ..     138     163 .. 0.82
   2 ?   -0.3   0.0      0.57   9.4e+02     154     213 ..     261     313 ..     200     326 .. 0.58
   3 ?    2.1   2.0      0.11   1.7e+02      94     174 ..     409     492 ..     381     537 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00046
       DUF87  25 HlAil..gsTGsGKSntv 40 
                 H++i+  g+TGsGKS+t+
  CCE27587.1 145 HTCIFayGQTGSGKSYTM 162
                 777763379********8 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.57
       DUF87 154 keelrklknqaiarlldkledllrkggsfsnsstdliallleklekegkitiidlsgvde 213
                 +++  + k++  ++ ++++  +++k++++   + d+++      e++++i  +dl+g + 
  CCE27587.1 261 SRTTASTKMNDTSSRSHAVFTIMLKQIHH---DMDTDE----TTERSSRIRLVDLAGSER 313
                 22222223333333333333333333333...222222....336777777788877554 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.11
       DUF87  94 pwsldpeelldllee.ddkpaaavqrsvleealdqakakeekeklssdepveklleelk...kekeelrklknqaiarlldkled 174
                  +++  ++ ++ +e   + +a a++ +vl+  ++  + ++ek  + ++e +e+ ++ +    +++ee++  +++ i++l+   e 
  CCE27587.1 409 TRAVVNQDQISTAERdAQIAAMAEEIRVLQLSVSDSR-QKEKSAMEAEERLEEYQNRVAtmqRMMEERSMVAESKIKKLQTENEA 492
                 4444445555555554444444556677777777666.57777777777777777777633323333333333333333333333 PP

>> Tau95  RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.7   0.00029      0.47      46      99 ..     428     498 ..     387     508 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00029
                 -...............--S--TT-----...HHHHHHHHHHHHHHHH-SEEEHHHHHTTS-GGGT..TTHH CS
       Tau95  46 k...............PtepeeelvkelkekkelqkaveelkklfeerPiwtrraLknklekker..kklk 99 
                                   ++e+++++++++ +e q++v+ +++++eer ++  +++k+  +++e    +lk
  CCE27587.1 428 AamaeeirvlqlsvsdSRQKEKSAMEAEERLEEYQNRVATMQRMMEERSMVAESKIKKLQTENEAlkLHLK 498
                 0233345555566666888889999999999************************9987666655333444 PP

>> Noggin  Noggin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.012        20      17      44 ..     222     249 ..     212     322 .. 0.84
   2 ?    3.8   0.3     0.029        47      62     134 ..     390     464 ..     361     482 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.012
      Noggin  17 qhylrlrPvPsdnlpvvdliedPdPald 44 
                  hyl++r +P++ + v+dl+e P   +d
  CCE27587.1 222 PHYLKIRESPTEGPYVKDLTEVPVRSID 249
                 59*******************9976655 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.029
      Noggin  62 kfdpnflsvsaPeeek...lsgaeeleeldaklrlkatgalpkeikkldlkealkkgkkkklskklrrklqqwlws 134
                 ++d ++ +++  ++ k   +++  ++++  +  r  + +a+ +ei+ l+l+    +++k+k + +++ +l+++  +
  CCE27587.1 390 DYDETLSTLRYADQAKrirTRAVVNQDQISTAERDAQIAAMAEEIRVLQLSVSD-SRQKEKSAMEAEERLEEYQNR 464
                 5555555544444333111222333334455566777889999***99996655.777888888888888887654 PP

>> MLANA  Protein melan-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   0.00015      0.25      92     115 ..     213     236 ..     188     238 .. 0.88
   2 ?   -1.9   0.2       2.5   4.1e+03      82      82 ..     463     463 ..     415     507 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
       MLANA  92 fesvvpdapPaYekiaaeqsPPPY 115
                 + +vvp+apP Y ki  ++   PY
  CCE27587.1 213 LVPVVPNAPPHYLKIRESPTEGPY 236
                 569*************99999999 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.5
       MLANA  82 s 82 
                 +
  CCE27587.1 463 N 463
                 1 PP

>> DUF2018  Domain of unknown function (DUF2018)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.25   4.1e+02      49      76 ..     405     432 ..     393     434 .. 0.82
   2 ?    7.8   3.7    0.0039       6.3      21      59 ..     454     491 ..     448     506 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.25
                 HHHHHCCCHHHHHHHHHHHHHHHHHHHH CS
     DUF2018  49 keikslilenkdeveakkkdlyIesmgn 76 
                 k+i++  + n+d++++++ d  I  m++
  CCE27587.1 405 KRIRTRAVVNQDQISTAERDAQIAAMAE 432
                 456666666*****************96 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0039
                 HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHCCCHHH CS
     DUF2018  21 vekeLekllerlaalellleekGlekvekeikslilenk 59 
                 +e+ Le+  +r+a ++ ++ee+ +   e++ik+l +en+
  CCE27587.1 454 AEERLEEYQNRVATMQRMMEERSMV-AESKIKKLQTENE 491
                 5889******************888.9******998854 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2     0.012        19      67      91 ..     131     154 ..      95     161 .. 0.73
   2 ?    6.5   5.0    0.0078        13      10      70 ..     451     533 ..     442     542 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.012
                 XXXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA  67 segkenLarlYeeGFHiCnvlyGsr 91 
                 s g+e L + + eG+H C   yG++
  CCE27587.1 131 SLGEEFLDHNF-EGYHTCIFAYGQT 154
                 44555555544.8**********97 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0078
                 HHHHHHHHHHHHHHHHHHHHHHHH..HH..HHHHHHHHHHHHHHHHH..................XXXXXXXXXXXXXXXXXX CS
        YabA  10 leeleeqleelleeleelkeelae..ll..eenaeLeleneklrerl..................eeeekkekekkkelsegk 70 
                  +e ee+lee +++++++++ ++e  ++   + ++L++ene l+ +l                  +++e++eke+++++s+g 
  CCE27587.1 451 AMEAEERLEEYQNRVATMQRMMEErsMVaeSKIKKLQTENEALKLHLklaieslknpipavsikaQSTEEAEKENRHTVSDGS 533
                 5566777777777777777766543233113457999****999999999999999999999877556666666666666655 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.3      0.26   4.3e+02      33      61 ..     446     474 ..     422     477 .. 0.64
   2 ?   11.4   0.9   0.00017      0.28       6      45 ..     480     525 ..     479     531 .. 0.90
   3 ?   -2.5   0.0       3.5   5.8e+03      46      66 ..     564     584 ..     553     585 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.26
      Cnn_1N  33 lseeqkeellkenielkveveslqkelke 61 
                  +e++  e+++ + e + +v+++q+ ++e
  CCE27587.1 446 QKEKSAMEAEERLEEYQNRVATMQRMMEE 474
                 33455566666777777777777776665 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00017
      Cnn_1N   6 eeqidkLkKENFdLKLriyfLeerleklse......eqkeellken 45 
                 e++i+kL+ EN  LKL ++   e l++  +      ++ ee++ken
  CCE27587.1 480 ESKIKKLQTENEALKLHLKLAIESLKNPIPavsikaQSTEEAEKEN 525
                 789***************9999999988888999999999999999 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.5
      Cnn_1N  46 ielkveveslqkelkekkkll 66 
                  el++e++   +++ +++kl+
  CCE27587.1 564 SELQDEMHRYLQDMGNLRKLI 584
                 588888888888888888775 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.7   2.7e+03      16      54 ..     258     298 ..     253     300 .. 0.72
   2 ?    8.4   8.0   0.00091       1.5     142     202 ..     444     519 ..     400     536 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.7
     HAUS6_N  16 pdksritfsedmfdk.pnk.kafeivlyfLFnklDpeeakk 54 
                 +d+sr+t s++m d+ ++  ++f i+l +     D +e+++
  CCE27587.1 258 GDQSRTTASTKMNDTsSRShAVFTIMLKQIHHDMDTDETTE 298
                 78899999999999965555667777777777777776665 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00091
     HAUS6_N 142 aqdlsklvaahrvslrrflrekaaad.rarqkyqenaqllekkerelraeleelqaelkae..................k 202
                 +++     ++ ++++++ l+e+++ +  ++++++e++++ e k+++l++e+e+l+ +lk++                  +
  CCE27587.1 444 SRQK----EKSAMEAEERLEEYQNRVaTMQRMMEERSMVAESKIKKLQTENEALKLHLKLAieslknpipavsikaqstE 519
                 4333....4445556666666666431359999***********************999987777777666543221111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1659  (0.0925317); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4172.76
//
Query:       CCE27588.1  [L=621]
Description: probable hydroxyacylglutathione hydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-61  206.2  10.7    5.1e-61  205.3  10.7    1.5  1  Las1         Las1-like
    2.5e-20   72.8   0.1    7.1e-20   71.3   0.1    1.9  1  HAGH_C       Hydroxyacylglutathione hydrolase C-terminus
    1.7e-17   64.1   1.2    3.4e-10   40.3   0.3    2.4  2  Lactamase_B  Metallo-beta-lactamase superfamily
  ------ inclusion threshold ------
      0.026   12.8   0.0      0.049   11.9   0.0    1.3  1  Pox_P4B      Poxvirus P4B major core protein


Domain annotation for each model (and alignments):
>> Las1  Las1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.3  10.7   1.1e-64   5.1e-61       1     153 []       7     236 ..       7     236 .. 0.99

  Alignments for each domain:
  == domain 1  score: 205.3 bits;  conditional E-value: 1.1e-64
        Las1   1 tpWrdrrellevreqlya................................................................................. 18 
                 tpWrdr+ell vreq+y+                                                                                 
  CCE27588.1   7 TPWRDRQELLLVREQFYSaststdrdqqlqlqqqqsseantiaqdrtpvtarvyrvsssddlqhdarsdtcaapthaprpsqheqntsdsgatgatrds 105
                 8************************************************************************************************** PP

        Las1  19 ..essseeeerkralarvsawrsrgneklphavestalLleailsdeekklsasssssalraaysaalvRfvnglldsaqkkqraasvaavakelglpa 115
                   ++ s+++++++a+arvs+w++rgn  +ph+vestalL++a+lsd++ ++    + +a+raaysaa++Rfv+glld +q+kqr++s++a+ak++glpa
  CCE27588.1 106 akTQWSRQQRQRQAVARVSMWMQRGN--CPHMVESTALLTAAMLSDDGLAG----GVYAVRAAYSAAFSRFVTGLLDGHQDKQRKQSMYAIAKTIGLPA 198
                 98888*********************..**********************9....99****************************************** PP

        Las1 116 tlVelRHeatHeelpslaeLreaakkaLewlwenYWkk 153
                 t+VelRH+atHe+lpsla+Lr+aakkaL+w+w++YWk+
  CCE27588.1 199 TFVELRHQATHEQLPSLAKLRSAAKKALDWIWNYYWKH 236
                 ************************************96 PP

>> HAGH_C  Hydroxyacylglutathione hydrolase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.1   1.6e-23   7.1e-20       1      80 []     543     621 .]     543     621 .] 0.91

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 1.6e-23
      HAGH_C   1 EYtlsNlkFalsvepdnealkkrlkevkelrakgeptvpstladEkktNpFLRldepevqkavg.ee.vevfaaLRelKdnF 80 
                 EYt++N+kFa+sv p+ +a+kk++++++    + ++ +++t+adEkk+N+F+Rld+p vqka+g +e v+v+++LRe+K+nF
  CCE27588.1 543 EYTKANAKFAMSVLPS-DAVKKLQAFTDGD--DVTTPGKFTIADEKKHNVFMRLDDPIVQKATGaSEpVDVMNKLREMKNNF 621
                 9*************86.5899999999888..446779**************************6448*************9 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.3   7.6e-14   3.4e-10       5      70 ..     378     443 ..     374     453 .. 0.90
   2 !   22.2   0.0   2.5e-08   0.00011     118     197 .]     469     542 ..     454     542 .. 0.73

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 7.6e-14
                  SSEEEEEE..ETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCC CS
  Lactamase_B   5 pvnsylie..gdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdv 70 
                  + ++yl++    +++++iD+  ++e a +++   a+ ++  +++ +i+TH+H+DH+Gg+++l ++   
   CCE27588.1 378 NNYAYLVVddASKDAFIIDPAHPEEVAPILK--DAISKGTINLKGIINTHHHWDHAGGNKKLLQELET 443
                  567999996666*****************96..*****************************998765 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2.5e-08
                  CTEEEEEHECTTSTSCCEEEEEE..TTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHSEEEE.SS CS
  Lactamase_B 118 ggrralyvtggpghghghgvvey..gggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkaevlvp.gH 197
                  +g+ a   +++p h+ +++++++  + gk +ftGD+l++g  gr+ +         +  ae   +  ++la l++++lv+ gH
   CCE27588.1 469 LGDIAIRSVHTPCHTQDSICFFMedRTGKAVFTGDTLFNGGCGRFFE---------GNAAEMHEALNTRLASLPDDTLVYsGH 542
                  5555666666666666666665533889*******************.........4444444444455669********999 PP

>> Pox_P4B  Poxvirus P4B major core protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.1e-05     0.049     433     490 ..     448     505 ..     441     509 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.1e-05
     Pox_P4B 433 nigyqscravdalpvldanfaaglvadrainsPvivnGvlifyverrqnknilgGecy 490
                  ig ++c+av+++p+ +  f+ g +a r++++P  +   + f++e r +k++++G++ 
  CCE27588.1 448 IIGGKNCEAVTKTPQHEESFKLGDIAIRSVHTPCHTQDSICFFMEDRTGKAVFTGDTL 505
                 578899*************************************************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4287.57
//
Query:       CCE27589.1  [L=378]
Description: uncharacterized protein CPUR_01063 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.28   10.7  14.1       0.38   10.3  14.1    1.1  1  Exonuc_VII_L     Exonuclease VII, large subunit
        1.5    7.4  39.4        2.4    6.7  39.4    1.3  1  Med15            ARC105 or Med15 subunit of Mediator complex 
        2.5    7.0   8.5        4.1    6.4   8.5    1.2  1  CLN3             CLN3 protein
        4.4    7.5   8.2         12    6.0   7.7    1.9  2  Thioredoxin_4    Thioredoxin


Domain annotation for each model (and alignments):
>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  14.1   8.5e-05      0.38     175     250 ..      52     124 ..       5     142 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.5e-05
  Exonuc_VII_L 175 asrlk.speellerkrqrldeleerleralkkqlkkkrerleelk.erlkekle.ekkerlkklkerlelleekkerle 250
                   a+ ++ +p + +++++q++++ +++l+++  +ql++++++ ++ +  +l+ +l+ +++++l+ l++      + ++ l+
    CCE27589.1  52 ARPVSwHPATYVQQQQQQFQHQQQQLRQQ--QQLRHQQQQQQQQQqLQLQLQLQlQQQQQLNLLQQPS----QYQQYLQ 124
                   22234589999**********99999994..3443333333333302233222202223333332222....2222222 PP

>> Med15  ARC105 or Med15 subunit of Mediator complex non-fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  39.4   0.00054       2.4     154     280 ..      10     135 ..       1     158 [. 0.71

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00054
       Med15 154 gqaagvmqqsiqqqqsttpn.qmganqgsaqgqavgknqgq.qapvgsqqPsqmgapimlg.yagngqmqgpngqgggaggnnqqnplvqtrlqaqlqn 249
                 g+ + v+ ++ +  +s + n +  ++ +++ +  +  + +q  a + s +P   +++++++ +++++q++++++   + + ++qq++l   +lq qlq+
  CCE27589.1  10 GNSPQVS-SMASRRRSMMGNgVWAPERQQQVFDYFSSQSEQpSARPVSWHPATYVQQQQQQfQHQQQQLRQQQQLRHQQQQQQQQQQL---QLQLQLQL 104
                 4444444.44444444454414455666666777776665525678889999999998886246777888888888888888888888...9999**** PP

       Med15 250 qqkqqldqvrgpadaqaqmqqqaqanagmnp 280
                 qq+qql+  + p++ q   qqq+ a   + p
  CCE27589.1 105 QQQQQLNLLQQPSQYQQYLQQQQAAYVLPTP 135
                 ****************999999877665555 PP

>> CLN3  CLN3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   8.5   0.00091       4.1     173     253 ..      63     142 ..      41     145 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00091
        CLN3 173 keakaeeeeeeyekleeeeeeeeeeseeeelleseaasaaeeeeeeesselkkslkeklklvksLllkymlPLllVYlaeY 253
                  ++++++ ++++++l+++++ +++ +++++++++ + + + + +++++ +l ++ ++  +++++  + y+lP  + Y aeY
  CCE27589.1  63 VQQQQQQFQHQQQQLRQQQQLRHQ-QQQQQQQQQLQLQLQLQLQQQQQLNLLQQPSQYQQYLQQQQAAYVLPTPSLYGAEY 142
                 333333333444444444433333.3333334444444445555556677888888888889998999************9 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.7    0.0028        12      72     144 ..      61     137 ..      37     141 .. 0.64
   2 ?   -1.5   0.0      0.54   2.4e+03      81      98 ..     175     192 ..     172     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0028
                    TT--TTHHHHHHHHHHHHTHHHHTTS-HHHHH.........HHHHHTS-------HHHHHHHHHHHHHHT--SS-EE CS
  Thioredoxin_4  72 cageespeaflaikallysqqeewaeslkelaae....aldkdekfeacleeekldalveaeskeakkagiestPtf 144
                     +++++++ f   ++ l++qq+  ++++++ +++    +l+ + + +++l+  +   + +++++++++a +  tP++
     CCE27589.1  61 TYVQQQQQQFQHQQQQLRQQQQLRHQQQQQQQQQqlqlQLQLQLQQQQQLNLLQQPSQYQQYLQQQQAAYVLPTPSL 137
                    35666679999999999999999999944444333444333333344455555666666777777777777788877 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.54
                    HHHHHHHHHTHHHHTTS- CS
  Thioredoxin_4  81 flaikallysqqeewaes 98 
                    f+a +++ly+q +ew+ +
     CCE27589.1 175 FPASDQALYTQSAEWNDA 192
                    7788999********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4180  (0.233142); expected 358.6 (0.02)
Passed bias filter:                      894  (0.0498633); expected 358.6 (0.02)
Passed Vit filter:                       234  (0.0130515); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.48
# Mc/sec: 2365.71
//
Query:       CCE27590.1  [L=21]
Description: uncharacterized protein CPUR_01064 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (21 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        46  (0.00256568); expected 358.6 (0.02)
Passed bias filter:                       34  (0.00189637); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.26s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 160.17
//
Query:       CCE27591.1  [L=147]
Description: uncharacterized protein CPUR_01065 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1091.88
//
Query:       CCE27592.1  [L=593]
Description: related to UTR1 (associated with ferric reductase activity) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-70  237.0   0.0    3.7e-70  236.4   0.0    1.3  1  NAD_kinase  ATP-NAD kinase


Domain annotation for each model (and alignments):
>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.4   0.0   2.1e-74   3.7e-70       2     291 ..     223     562 ..     222     563 .. 0.90

  Alignments for each domain:
  == domain 1  score: 236.4 bits;  conditional E-value: 2.1e-74
                 EEEEESSCGGTCSHHHHHHHHHHHCT-...EEEEECCGGCCSSSTT--HHHHTTTT--........................EEECCC-TTTTTSSSEE CS
  NAD_kinase   2 vgivvnpikkeaieraeevarwLldals.rvlevtveeklgeslaeaaefrsevisvlkkvkttd.................dtrkaleafadagvdli 82 
                 + ++++ +++ +i  ++e+++wLld+ +  ++ v+v++kl+   ++ ++    ++ ++ ++   d                 ++ +++++  ++ +d++
  CCE27592.1 223 IFLLTKIYDQDLIPKTRELTKWLLDKERdVSYVVYVQDKLKTNRKFDVAGIIDDVAQAYAA---DpavdlsaakegiarrlrYWDESMCKSRPHMFDFV 318
                 677888889999999***********66567778899999888777766666666555444...24559999*************************** PP

                 EEEE-HHHHHHHHHHHHHCT-EEEEEESSS--SS-SEEGGGHHHHHHHHHHT-SEEEEEEEEEEEEEETTE............................ CS
  NAD_kinase  83 ivvGGDGTaldvarllqkaeiPvlgvnaGvkgfltefepeaaaellekllegeirvekrevldavimrskgee.......................... 155
                 i++GGDGT+l +++l+q+ ++Pvl++ +G++gflt f++e+++++l+  + ++++v++r++++ ++mrs ++                           
  CCE27592.1 319 ITLGGDGTVLYASWLFQRIVPPVLSFALGSLGFLTKFDFEDYTRILSSTFSKGVTVSLRLRFESTVMRSIKRGlsdqekesgeeeeelhrhrdlveelv 417
                 ***************************************************************766666665566666677777777777777777777 PP

                 ...........EEEEEEESSEEEEEESSSSS-EEEEEEETTEEEEEEEESEEEEE-TGGGGTHHHHTT--EE-TT---EEEEEESESSS----EEE-TT CS
  NAD_kinase 156 .......diadiviensvlnevviirgpgstlielelyvdtelleadqldglivstPtGstayslsaGgplisPgvlailivpicPhslssrpiVvsss 247
                         ++   ++  +lnevv++rgp++t++++e+  d+e  +++ +dg++vstPtGstay l+aGg+l++P+ + +l++ ic+h+ls+rpi++++ 
  CCE27592.1 418 geeredeHTHRPDGTFEILNEVVVDRGPNPTMAYTEIFGDDEHFTSVLADGICVSTPTGSTAYNLAAGGSLCHPENPVMLVTSICAHTLSFRPIILPDT 516
                 7778878999999999*********************************************************************************** PP

                 -EEEEEE-..SS--EEEEETTTEEEEE-TT-EEEEEEESSEEEEEE CS
  NAD_kinase 248 sklrirva..srseallaldGseelelspgdevrvtasdkkfklir 291
                   lr+ v+  +r++ ++ +dG+e++el+pgd+v+++as+++f +++
  CCE27592.1 517 IVLRVGVPydARTSSWASFDGRERVELKPGDYVTISASRFPFASVQ 562
                 *****************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4438.40
//
Query:       CCE27593.1  [L=199]
Description: related to calmodulin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   15.6   0.0        3.5    8.0   0.0    2.4  2  EF-hand_9  EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00019       3.5      10      49 ..      59      98 ..      55     110 .. 0.85
   2 ?    5.1   0.0    0.0016        29       4      64 ..     134     194 ..     132     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00019
   EF-hand_9 10 qktGrVpvsrlidyLravtaqdpeeseLeelakelDPdge 49
                +k G+ p+ ++++ L a     ++ ++L e+   lDP+  
  CCE27593.1 59 EKKGVLPIDDVKSALIALDVTPSSQAQLHEFLDILDPESD 98
                689*************9999666667***********976 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0016
   EF-hand_9   4 FevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdge.dasvdldtflrvmre 64 
                 F+++  ++ G +++++l  +  av ++d  +  L +   e+  +g     v ++ f +vmr+
  CCE27593.1 134 FRLFTNNQEGPITLAHLRRV-AAVLKEDVDDEMLKDMILEANGGGGvARGVRMEEFDEVMRN 194
                 88888888888888886443.23333466677888888888888887888999*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1555.49
//
Query:       CCE27594.1  [L=252]
Description: related to translation initiation factor 4e [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-35  119.9   0.0    1.1e-34  119.5   0.0    1.1  1  IF4E      Eukaryotic initiation factor 4E


Domain annotation for each model (and alignments):
>> IF4E  Eukaryotic initiation factor 4E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.0   6.4e-39   1.1e-34       1     141 [.      46     191 ..      46     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 6.4e-39
                 EEEEEEEEEEE-TTT...--SS-SGGG-EEEEE.EEEHHHHHHHHHHS--GGGB-SSEEEEEEETT--SSTTSHHHHS-EEEEEEE-----HHHHHHHH CS
        IF4E   1 pLkskWtlwfdsksk...sksenyeeslkkvat.fstveeFwslynnlkkpsklkvksdyhlFkkgikPmWEdpankkGGkwvirlkkkekldrlWeel 95 
                 p+++ W ++fd++sk    +  +y+ +l+++++ +++v+ Fw+ ynn ++++++k++++++lFk+g++P+WEd++n +GG+w++r+ k ++   +W+++
  CCE27594.1  46 PIQHYWNVYFDRQSKdhkPDGGEYNVQLEQLGDpIESVQAFWR-YNNNTPVDQIKTRESIYLFKQGFRPIWEDRRNINGGSWTFRVPK-ATGPAIWTRV 142
                 689*******6555543445666********7559********.7888889************************************9.7799****** PP

                 HHHHHTT-SS--....-SEEEEEEEE-SSEEEEEEEES-TT-HHHHHHH CS
        IF4E  96 llaligeqleee...edeicGvvvsvRkkedrisiWtrdasdeekveki 141
                  l++ige+l++    +d+ cGv +svR +++ i++W+rdas++++v+++
  CCE27594.1 143 QLLAIGEKLQSVlddDDQLCGVGLSVRFNAHLITVWHRDASKKNSVDAM 191
                 *********9988878************************887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2053.43
//
Query:       CCE27595.1  [L=503]
Description: uncharacterized protein CPUR_01069 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-12   46.7   0.0     0.0075   16.4   0.0    3.6  3  HTH_17           Helix-turn-helix domain
    5.5e-10   38.7   0.1     0.0043   16.8   0.0    3.7  3  HTH_23           Homeodomain-like domain
      7e-09   35.7   0.0        0.4   11.0   0.0    3.3  3  NUMOD1           NUMOD1 domain
      1e-08   34.8   0.0        0.3   10.9   0.0    3.7  3  MerR             MerR family regulatory protein
    8.7e-08   32.2   1.5      0.049   13.8   0.1    4.6  4  HTH_28           Helix-turn-helix domain
    3.7e-06   26.4   4.6      0.077   12.3   0.0    3.2  3  MSP1a            Major surface protein 1a (MSP1a)
    4.5e-05   23.4   6.4        1.7    8.8   0.0    4.5  5  MerR_1           MerR HTH family regulatory protein
    6.5e-05   23.0   1.8        1.3    8.9   0.0    4.0  4  DUF1804          Protein of unknown function (DUF1804)
    0.00054   19.8   0.2          3    7.6   0.0    3.1  3  DUF658           Protein of unknown function (DUF658)
     0.0038   17.0   6.9        0.8    9.5   0.2    4.2  3  BrkDBD           Brinker DNA-binding domain
     0.0062   16.3   2.8        1.4    8.6   0.1    3.2  3  DUF3485          Protein of unknown function (DUF3485)
  ------ inclusion threshold ------
      0.012   15.6   1.1         25    5.0   0.0    3.4  3  Phage_terminase  Phage terminase small subunit
      0.019   14.7   0.0         16    5.3   0.0    3.4  3  HTH_DeoR         DeoR-like helix-turn-helix domain
      0.022   14.8   0.0        2.1    8.4   0.0    3.3  3  HTH_29           Winged helix-turn helix
      0.034   13.8   0.0         36    4.1   0.0    3.4  3  Iron_traffic     Bacterial Fe(2+) trafficking
      0.086   12.5   0.5         54    3.5   0.0    3.4  3  CENP-B_N         CENP-B N-terminal DNA-binding domain
      0.088   12.5   0.0         64    3.3   0.0    3.3  3  Sigma70_r4_2     Sigma-70, region 4


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.1e-06    0.0075       3      25 ..      80     102 ..      80     109 .. 0.92
   2 !   13.0   0.0   8.4e-05     0.088       3      25 ..     250     272 ..     250     281 .. 0.88
   3 !   12.8   0.0    0.0001      0.11       3      25 ..     393     415 ..     393     425 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.1e-06
      HTH_17   3 tveEaAelLgvsrstvyrlirrg 25 
                 t+ EaA+++++s +tv+ ++r+ 
  CCE27595.1  80 TIPEAAAFFNISHHTVRSWRRQQ 102
                 89******************975 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 8.4e-05
      HTH_17   3 tveEaAelLgvsrstvyrlirrg 25 
                 t+ EaA+++++s +t+  ++++ 
  CCE27595.1 250 TIGEAADFFKISANTIKSWRKQQ 272
                 899*****************864 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.0001
      HTH_17   3 tveEaAelLgvsrstvyrlirrg 25 
                 t+ EaA+++++s +t+  ++++ 
  CCE27595.1 393 TIGEAADFFKISANTIKTWRKQQ 415
                 899*****************864 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.1e-06    0.0043      19      40 ..      80     101 ..      79     112 .. 0.87
   2 !    8.5   0.0    0.0017       1.8      20      40 ..     251     271 ..     250     282 .. 0.89
   3 !    9.0   0.0    0.0012       1.2      20      40 ..     394     414 ..     393     424 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.1e-06
      HTH_23  19 svreIAreLgvsrrTvyrwlkr 40 
                 +++e+A+ +++s++Tv+ w++ 
  CCE27595.1  80 TIPEAAAFFNISHHTVRSWRRQ 101
                 899****************997 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0017
      HTH_23  20 vreIAreLgvsrrTvyrwlkr 40 
                 + e+A+ + +s +T+  w+k 
  CCE27595.1 251 IGEAADFFKISANTIKSWRKQ 271
                 569****************97 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0012
      HTH_23  20 vreIAreLgvsrrTvyrwlkr 40 
                 + e+A+ + +s +T+  w+k 
  CCE27595.1 394 IGEAADFFKISANTIKTWRKQ 414
                 569****************96 PP

>> NUMOD1  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00074      0.78      19      34 ..      81      96 ..      80      97 .. 0.92
   2 !   11.0   0.0   0.00038       0.4      18      34 ..     250     266 ..     249     267 .. 0.92
   3 !   10.7   0.0   0.00046      0.49      18      34 ..     393     409 ..     392     410 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00074
      NUMOD1 19 ireAakyLgishntIn 34
                i eAa +++ish+t++
  CCE27595.1 81 IPEAAAFFNISHHTVR 96
                89************97 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00038
      NUMOD1  18 SireAakyLgishntIn 34 
                 +i eAa++++is ntI+
  CCE27595.1 250 TIGEAADFFKISANTIK 266
                 799*************8 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00046
      NUMOD1  18 SireAakyLgishntIn 34 
                 +i eAa++++is ntI+
  CCE27595.1 393 TIGEAADFFKISANTIK 409
                 799*************7 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0014       1.4       1      22 [.      80     101 ..      80     108 .. 0.89
   2 !   10.9   0.0   0.00028       0.3       1      21 [.     250     270 ..     250     276 .. 0.90
   3 !   10.8   0.0    0.0003      0.32       1      21 [.     393     413 ..     393     419 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0014
                 EHHHHHHHHTTTHHHHHHHHHT CS
        MerR   1 tIgevAeltGvsprtLRyYEre 22 
                 tI e+A ++++s +t+R + r+
  CCE27595.1  80 TIPEAAAFFNISHHTVRSWRRQ 101
                 788****************886 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00028
                 EHHHHHHHHTTTHHHHHHHHH CS
        MerR   1 tIgevAeltGvsprtLRyYEr 21 
                 tIge+A+++ +s+ t+  + +
  CCE27595.1 250 TIGEAADFFKISANTIKSWRK 270
                 8***************99866 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.0003
                 EHHHHHHHHTTTHHHHHHHHH CS
        MerR   1 tIgevAeltGvsprtLRyYEr 21 
                 tIge+A+++ +s+ t+  + +
  CCE27595.1 393 TIGEAADFFKISANTIKTWRK 413
                 8***************99866 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   4.6e-05     0.049      14      35 ..      80     101 ..      50     113 .. 0.83
   2 ?   -3.1   0.0       8.7   9.2e+03       1      12 [.     220     231 ..     220     232 .. 0.86
   3 !    7.3   0.0     0.005       5.3       8      35 ..     240     271 ..     237     280 .. 0.84
   4 !    6.4   0.0    0.0094       9.9       8      35 ..     383     414 ..     363     418 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.6e-05
      HTH_28  14 svreaArelgisrrtvyrWikr 35 
                 +++eaA+ ++is+ tv++W+++
  CCE27595.1  80 TIPEAAAFFNISHHTVRSWRRQ 101
                 8999***************997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.7
      HTH_28   1 qRleiikllaaG 12 
                 qR+e++ +l+++
  CCE27595.1 220 QRIEVLAYLQNH 231
                 899***999875 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.005
      HTH_28   8 llaaGh....svreaArelgisrrtvyrWikr 35 
                 ++++G+    ++ eaA  + is  t+++W+k+
  CCE27595.1 240 PAQRGDwrspTIGEAADFFKISANTIKSWRKQ 271
                 5566644466999****************996 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0094
      HTH_28   8 llaaGh....svreaArelgisrrtvyrWikr 35 
                 ++++G+    ++ eaA  + is  t++ W+k+
  CCE27595.1 383 PAQRGDwrppTIGEAADFFKISANTIKTWRKQ 414
                 5555644567999****************996 PP

>> MSP1a  Major surface protein 1a (MSP1a)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   7.3e-05     0.077     107     213 ..      42     145 ..      29     178 .. 0.69
   2 ?    2.8   0.0     0.059        62     136     208 ..     240     327 ..     217     338 .. 0.68
   3 !   10.8   1.2   0.00021      0.22     134     224 ..     381     471 ..     352     500 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.3e-05
       MSP1a 107 DrsklkamaaLaalsvlaliaaivaCicvdakrGtWqGsilfLaalvLfaisaavvvatrdessaltvsa.vPasdqqpdvreavasgGsqedsaqvpt 204
                 +r++++  + L  l+ l+   ++ a  +   krG W  + +   a ++f is   v + r++  ++ ++a  P+s+ +p  +  + +gG++     vp 
  CCE27595.1  42 NRQTFSNQKRLEVLAYLKN-HVVYAPTVAPSKRGDWRPATI-PEAAAFFNISHHTVRSWRRQQDKILAEAgLPTSEPSPTLTAETRTGGGD--MPPVPE 136
                 5666777666666666654.46777788889*******999.677799*****9999999999888887648*******999988888887..444444 PP

       MSP1a 205 tsvPaaess 213
                 t+  +  ++
  CCE27595.1 137 TAQGSETTT 145
                 443322222 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.059
       MSP1a 136 dakrGtWqGsilfLaalvLfaisaavvvatrdes...............saltvsavPasdqqpdvreavasg.GsqedsaqvpttsvP 208
                  a+rG W    +   a  +f isa  + + r++                  lt +  P     p v ea+ s      +s+++ +t  P
  CCE27595.1 240 PAQRGDWRSPTI-GEAADFFKISANTIKSWRKQQdkilakaglstlepsPSLTTEPQPENRDMPPVSEAAQSSeAATAQSSEATATPTP 327
                 589999*99988.566689*****88888888886677777666666656677777777777777777766541334445555555555 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00021
       MSP1a 134 cvdakrGtWqGsilfLaalvLfaisaavvvatrdessaltvsa.vPasdqqpdvreavasgGsqedsaqvpttsvPaaessavaPdtivvsv 224
                    a+rG W    +   a  +f isa  + + r++  ++ ++a +P+ + +p+  + + + G  e ++q   t   ++e++ ++ +t   s 
  CCE27595.1 381 MGPAQRGDWRPPTI-GEAADFFKISANTIKTWRKQQDKILAKAgIPTLKAKPQPAPVAETAGASETTGQSSETTGQSSETTGQSSETTGQSS 471
                 446899***99999.566689********9999999888777659*******9999999999999999998888877777666666554333 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0016       1.7       2      23 ..      80     101 ..      79     109 .. 0.90
   2 ?   -2.0   0.2       3.9   4.1e+03      27      47 ..     207     226 ..     200     230 .. 0.52
   3 !    7.0   0.0    0.0059       6.2       2      24 ..     250     272 ..     250     280 .. 0.91
   4 ?   -2.1   0.2       4.1   4.3e+03      31      52 ..     352     371 ..     345     374 .. 0.55
   5 !    7.6   0.0    0.0039       4.1       2      24 ..     393     415 ..     393     422 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0016
                 EHHHHHHHHTS-HHHHHHHHHH CS
      MerR_1   2 sigevakilgvtthtlryweke 23 
                 +i e+a  ++++ ht+r w+++
  CCE27595.1  80 TIPEAAAFFNISHHTVRSWRRQ 101
                 799****************997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.9
                 S-EE-TTS-EEEEHHH.HHHHH CS
      MerR_1  27 kpkrteggrryYtded.ierLk 47 
                 kp   ++ +r Y++++ ie+L+
  CCE27595.1 207 KPV--TKIQRTYNNRQrIEVLA 226
                 333..35567777764255554 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0059
                 EHHHHHHHHTS-HHHHHHHHHHT CS
      MerR_1   2 sigevakilgvtthtlrywekeg 24 
                 +ige+a  + +++ t++ w+k+ 
  CCE27595.1 250 TIGEAADFFKISANTIKSWRKQQ 272
                 8*******************985 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 4.1
                 -TTS-EEEEHHHHHHHHHHHHH CS
      MerR_1  31 teggrryYtdedierLklikyL 52 
                  ++ +r Y++++  rL++  yL
  CCE27595.1 352 VTQIQRTYNNRQ--RLQVLAYL 371
                 345567777764..55555555 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0039
                 EHHHHHHHHTS-HHHHHHHHHHT CS
      MerR_1   2 sigevakilgvtthtlrywekeg 24 
                 +ige+a  + +++ t++ w+k+ 
  CCE27595.1 393 TIGEAADFFKISANTIKTWRKQQ 415
                 8*******************985 PP

>> DUF1804  Protein of unknown function (DUF1804)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.7   7.1e+03      87     105 ..      41      59 ..      35      73 .. 0.78
   2 !    8.9   0.0    0.0013       1.3      21      43 ..      80     102 ..      76     105 .. 0.89
   3 ?    5.3   0.1     0.017        18      21      43 ..     250     272 ..     246     275 .. 0.88
   4 ?    5.1   0.0      0.02        21      21      43 ..     393     415 ..     390     418 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.7
     DUF1804  87 rentelsaedkveiLasLs 105
                 r+ + +s ++++e+La L 
  CCE27595.1  41 RNRQTFSNQKRLEVLAYLK 59 
                 6777889999999999875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0013
     DUF1804  21 sleeaAkkagvseaTarrwkrea 43 
                 ++ eaA+ +++s +T+r w+r+ 
  CCE27595.1  80 TIPEAAAFFNISHHTVRSWRRQQ 102
                 7889****************986 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.017
     DUF1804  21 sleeaAkkagvseaTarrwkrea 43 
                 ++ eaA+ +++s +T++ w+++ 
  CCE27595.1 250 TIGEAADFFKISANTIKSWRKQQ 272
                 6789***************9986 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.02
     DUF1804  21 sleeaAkkagvseaTarrwkrea 43 
                 ++ eaA+ +++s +T++ w+++ 
  CCE27595.1 393 TIGEAADFFKISANTIKTWRKQQ 415
                 6789***************9986 PP

>> DUF658  Protein of unknown function (DUF658)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.39   4.1e+02      15      36 ..      79     100 ..      73     107 .. 0.82
   2 !    7.3   0.0    0.0033       3.5      15      38 ..     249     272 ..     243     282 .. 0.86
   3 !    7.6   0.0    0.0028         3      16      38 ..     393     415 ..     387     429 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.39
      DUF658  15 gtideiadyfdisrtsislwik 36 
                  ti e a +f+is  ++  w +
  CCE27595.1  79 ATIPEAAAFFNISHHTVRSWRR 100
                 5899999999999999988865 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0033
      DUF658  15 gtideiadyfdisrtsislwikng 38 
                  ti e ad+f is ++i  w k+ 
  CCE27595.1 249 PTIGEAADFFKISANTIKSWRKQQ 272
                 599*****************9864 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0028
      DUF658  16 tideiadyfdisrtsislwikng 38 
                 ti e ad+f is ++i  w k+ 
  CCE27595.1 393 TIGEAADFFKISANTIKTWRKQQ 415
                 89*****************9864 PP

>> BrkDBD  Brinker DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.2   0.00076       0.8      31      51 ..      84     104 ..      42     109 .. 0.77
   2 ?    4.0   0.1     0.039        41      31      50 ..     254     273 ..     241     278 .. 0.82
   3 ?    4.3   0.3     0.033        35      31      50 ..     397     416 ..     355     421 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00076
                 HHHHTTS-HHHHHHHHTTHHH CS
      BrkDBD  31 vAkkynisrknvekWlqveeq 51 
                 +A  +nis   v+ W++++++
  CCE27595.1  84 AAAFFNISHHTVRSWRRQQDK 104
                 6888************99865 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.039
                 HHHHTTS-HHHHHHHHTTHH CS
      BrkDBD  31 vAkkynisrknvekWlqvee 50 
                 +A  + is   ++ W+++++
  CCE27595.1 254 AADFFKISANTIKSWRKQQD 273
                 68889************987 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.033
                 HHHHTTS-HHHHHHHHTTHH CS
      BrkDBD  31 vAkkynisrknvekWlqvee 50 
                 +A  + is   ++ W+++++
  CCE27595.1 397 AADFFKISANTIKTWRKQQD 416
                 788899**********9986 PP

>> DUF3485  Protein of unknown function (DUF3485)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.7   1.8e+03      32      69 ..      69     102 ..      54     108 .. 0.71
   2 !    6.2   0.0    0.0074       7.8      38      77 ..     189     228 ..     159     233 .. 0.77
   3 !    8.6   0.1    0.0013       1.4      31      77 ..     325     371 ..     304     375 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.7
     DUF3485  32 fpaeiggWkgvsddpedewvpkalgaddylsrtYrnsd 69 
                  p++ g+W+    ++  ++  ++ + +++ +r++r+ +
  CCE27595.1  69 APSKRGDWR----PATIPEAAAFFNISHHTVRSWRRQQ 102
                 578888888....5556667777777888888887644 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0074
     DUF3485  38 gWkgvsddpedewvpkalgaddylsrtYrnsdgevVtlyv 77 
                 + +g    p +e +pk l++ + ++rtY n++  +V  y+
  CCE27595.1 189 KRRGPMPKPLSEREPKRLKPVTKIQRTYNNRQRIEVLAYL 228
                 55666677889*****************998877777666 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0013
     DUF3485  31 sfpaeiggWkgvsddpedewvpkalgaddylsrtYrnsdgevVtlyv 77 
                   pa   + +g +  p +e +pk l++ ++++rtY n++  +V  y+
  CCE27595.1 325 PTPAPQRKRRGPKPKPLSERKPKRLKPVTQIQRTYNNRQRLQVLAYL 371
                 45666667788899999********************9999998887 PP

>> Phage_terminase  Phage terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.024        25      29      45 ..      85     101 ..      80     105 .. 0.81
   2 ?    3.7   0.1     0.057        61      28      47 ..     254     274 ..     247     278 .. 0.77
   3 ?    3.5   0.1     0.069        73      28      47 ..     397     417 ..     393     422 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.024
  Phage_terminase  29 AkvLdvsestvrkWKak 45 
                      A   ++s  tvr W+ +
       CCE27595.1  85 AAFFNISHHTVRSWRRQ 101
                      7789**********864 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.057
  Phage_terminase  28 IAkvLdvsestvrkW.KakDk 47 
                       A+   +s +t++ W K +Dk
       CCE27595.1 254 AADFFKISANTIKSWrKQQDK 274
                      588889999999999445565 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.069
  Phage_terminase  28 IAkvLdvsestvrkW.KakDk 47 
                       A+   +s +t++ W K +Dk
       CCE27595.1 397 AADFFKISANTIKTWrKQQDK 417
                      58999**********445665 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.015        16      16      32 ..      80      96 ..      77      97 .. 0.91
   2 ?    2.5   0.0      0.11   1.2e+02      16      31 ..     250     265 ..     246     267 .. 0.91
   3 ?    2.1   0.0      0.16   1.7e+02      16      31 ..     393     408 ..     392     410 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.015
    HTH_DeoR 16 sveelvellgvSeaTiR 32
                ++ e+++ +++S  T+R
  CCE27595.1 80 TIPEAAAFFNISHHTVR 96
                7889************9 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.11
    HTH_DeoR  16 sveelvellgvSeaTi 31 
                 ++ e+++ +++S +Ti
  CCE27595.1 250 TIGEAADFFKISANTI 265
                 789************9 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.16
    HTH_DeoR  16 sveelvellgvSeaTi 31 
                 ++ e+++ +++S +Ti
  CCE27595.1 393 TIGEAADFFKISANTI 408
                 6889***********9 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0     0.002       2.1       9      38 ..      72     104 ..      68     125 .. 0.80
   2 ?    0.3   0.0       0.7   7.4e+02      13      36 ..     246     272 ..     241     283 .. 0.84
   3 ?    1.1   0.0       0.4   4.2e+02      13      36 ..     389     415 ..     384     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.002
      HTH_29   9 aeGvs...tvsqiAkllglsrrtvyrwlkrfee 38 
                 ++G +   t+ ++A++ ++s  tv+ w++  ++
  CCE27595.1  72 KRGDWrpaTIPEAAAFFNISHHTVRSWRRQQDK 104
                 567777789*******************98665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.7
      HTH_29  13 s...tvsqiAkllglsrrtvyrwlkrf 36 
                 +   t+ ++A +  +s  t+  w+k  
  CCE27595.1 246 WrspTIGEAADFFKISANTIKSWRKQQ 272
                 45568999***************9975 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.4
      HTH_29  13 s...tvsqiAkllglsrrtvyrwlkrf 36 
                 +   t+ ++A +  +s  t+ +w+k  
  CCE27595.1 389 WrppTIGEAADFFKISANTIKTWRKQQ 415
                 5566899*****************985 PP

>> Iron_traffic  Bacterial Fe(2+) trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.034        36      31      60 ..      87     116 ..      84     124 .. 0.89
   2 ?    4.1   0.0     0.036        38      31      61 ..     257     287 ..     249     296 .. 0.89
   3 ?    0.6   0.0      0.42   4.4e+02      31      52 ..     400     421 ..     390     433 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.034
  Iron_traffic  31 fenvskeawqeWlkkqtmLiNekrLnladp 60 
                   f n+s++  ++W ++q  ++ e  L   +p
    CCE27595.1  87 FFNISHHTVRSWRRQQDKILAEAGLPTSEP 116
                   779*******************99988776 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.036
  Iron_traffic  31 fenvskeawqeWlkkqtmLiNekrLnladpk 61 
                   f ++s +  ++W k+q  ++ +  L+ ++p+
    CCE27595.1 257 FFKISANTIKSWRKQQDKILAKAGLSTLEPS 287
                   5689******************999998875 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.42
  Iron_traffic  31 fenvskeawqeWlkkqtmLiNe 52 
                   f ++s +  ++W k+q  ++ +
    CCE27595.1 400 FFKISANTIKTWRKQQDKILAK 421
                   6689************988765 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.051        54      32      52 ..      88     108 ..      83     109 .. 0.91
   2 ?    1.9   0.0      0.17   1.8e+02      32      51 ..     258     277 ..     252     279 .. 0.89
   3 ?    3.1   0.0     0.068        72      32      51 ..     401     420 ..     395     422 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.051
                 HT--CCHHHHHHHCHHHHCCH CS
    CENP-B_N  32 fnvpestlsdilknKkkllke 52 
                 fn+   t++ +  + +k+l+e
  CCE27595.1  88 FNISHHTVRSWRRQQDKILAE 108
                 9*****************986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.17
                 HT--CCHHHHHHHCHHHHCC CS
    CENP-B_N  32 fnvpestlsdilknKkkllk 51 
                 f + + t+  + k+ +k+l+
  CCE27595.1 258 FKISANTIKSWRKQQDKILA 277
                 88999*************97 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.068
                 HT--CCHHHHHHHCHHHHCC CS
    CENP-B_N  32 fnvpestlsdilknKkkllk 51 
                 f + + t+ ++ k+ +k+l+
  CCE27595.1 401 FKISANTIKTWRKQQDKILA 420
                 88999*************97 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.11   1.2e+02      29      47 ..      81      99 ..      80     101 .. 0.88
   2 ?    3.3   0.0     0.061        64      29      47 ..     251     269 ..     250     271 .. 0.87
   3 ?    2.5   0.0      0.11   1.1e+02      29      47 ..     394     412 ..     393     414 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.11
                  HHHHHHHHT--HHHHHHHH CS
  Sigma70_r4_2 29 ykEIAellgisegtVksrl 47
                  + E+A+ ++is  tV+s+ 
    CCE27595.1 81 IPEAAAFFNISHHTVRSWR 99
                  689**************86 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.061
                   HHHHHHHHT--HHHHHHHH CS
  Sigma70_r4_2  29 ykEIAellgisegtVksrl 47 
                   + E+A  ++is +t+ks+ 
    CCE27595.1 251 IGEAADFFKISANTIKSWR 269
                   5699*************85 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.11
                   HHHHHHHHT--HHHHHHHH CS
  Sigma70_r4_2  29 ykEIAellgisegtVksrl 47 
                   + E+A  ++is +t+k++ 
    CCE27595.1 394 IGEAADFFKISANTIKTWR 412
                   5699************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1180  (0.0658152); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 3154.40
//
Query:       CCE27596.1  [L=239]
Description: related to C-8,7 sterol isomerase/emopamil-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-69  231.9   6.1    3.8e-69  231.7   6.1    1.0  1  EBP       Emopamil binding protein


Domain annotation for each model (and alignments):
>> EBP  Emopamil binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.7   6.1   2.1e-73   3.8e-69       2     177 ..      14     228 ..      13     229 .. 0.98

  Alignments for each domain:
  == domain 1  score: 231.7 bits;  conditional E-value: 2.1e-73
         EBP   2 llavlavllaalllskrllpksklkkdrllfiWfafdaliHlilEGsflynsffs.......................................sqsll 61 
                 lla+l++ll+a+++sk llp+s++++ r+lfiW++ dal+H+ilEGsfly++ffs                                         +++
  CCE27596.1  14 LLATLTILLTAYTTSKALLPASTTRTLRFLFIWHLADALCHFILEGSFLYHCFFSyivpgsdsnansaleglyptphnflgwehnriygpqsggPGHPF 112
                 7899*****************999*********************************************************************999*** PP

         EBP  62 aqLwkeYakaDsRyltadltvvslelltvllagplallvvyaiakekplrhllqivlataelyGgvlyfatewlegslnldtseplylwvYlvffNalW 160
                 aqLw+ Ya+aD+R+++ dl vvslelltv++ gp+al+v+y+i + +p++++++ivlataelyGg+++f++ewl+g++nld s+++++wvYlvffN+lW
  CCE27596.1 113 AQLWMVYARADRRWAGVDLGVVSLELLTVFFDGPVALYVCYLIGRGSPKMYFWMIVLATAELYGGFMTFCPEWLTGNKNLDGSNFMFMWVYLVFFNCLW 211
                 *********************************************99**************************************************** PP

         EBP 161 vviPllllvesvkeiak 177
                 v iPl++l +s+ ++ k
  CCE27596.1 212 VAIPLYVLGHSYCQVLK 228
                 ***********998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1661.72
//
Query:       CCE27597.1  [L=69]
Description: uncharacterized protein CPUR_01071 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-31  107.2  11.8    3.8e-31  107.1  11.8    1.0  1  Grg1      Glucose-repressible protein Grg1
  ------ inclusion threshold ------
      0.097   12.6   0.1        0.2   11.6   0.1    1.6  1  DUF3756   Protein of unknown function (DUF3756)


Domain annotation for each model (and alignments):
>> Grg1  Glucose-repressible protein Grg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1  11.8   4.3e-35   3.8e-31       1      67 []       1      67 [.       1      67 [. 1.00

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 4.3e-35
        Grg1  1 MdtiknaanyVsekvqgataeaskeanKevaKdsnasigdRasAakdavsDKidekkhdakAeanKe 67
                M++ik+ anyV+e++++at++aske+nK+vaKds+a+ig+RasAakda++DK+ e+khdakAe++K+
  CCE27597.1  1 MESIKQGANYVAETAKQATSGASKETNKQVAKDSDAPIGTRASAAKDALGDKATESKHDAKAETHKQ 67
                9*****************************************************************8 PP

>> DUF3756  Protein of unknown function (DUF3756)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.2e-05       0.2       7      24 ..      26      43 ..      20      50 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.2e-05
     DUF3756  7 TnAlvakqakisiGayaa 24
                Tn  vak++  +iG +a+
  CCE27597.1 26 TNKQVAKDSDAPIGTRAS 43
                999************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 543.87
//
Query:       CCE27598.1  [L=230]
Description: related to CAX4 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-13   50.7   7.2    2.7e-13   49.9   4.8    2.3  2  PAP2             PAP2 superfamily
    2.9e-05   23.5   5.3    2.9e-05   23.5   5.3    1.8  2  UbiA             UbiA prenyltransferase family
    0.00064   19.8   0.0       0.19   11.9   0.0    2.4  2  DUF212           Divergent PAP2 family
  ------ inclusion threshold ------
      0.068   13.1   0.0       0.12   12.3   0.0    1.4  1  NDUF_B4          NADH-ubiquinone oxidoreductase B15 subunit (
       0.15   12.5   3.1        1.8    9.0   0.3    2.3  2  Phage_holin_3_1  Phage holin family (Lysis protein S)
        3.8    7.9  13.4       0.41   11.0   5.0    2.8  3  DUF3995          Protein of unknown function (DUF3995)


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   4.1e+03      74      99 ..      30      47 ..      16      52 .. 0.57
   2 !   49.9   4.8     9e-17   2.7e-13      52     128 ..      86     176 ..      50     183 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.4
        PAP2 74 llrrkrkkiglvllalillllavlva 99
                +l+ + +         +++++a+l+ 
  CCE27598.1 30 YLALLPQA--------LCVVYATLIL 47
                33333333........4444444444 PP

  == domain 2  score: 49.9 bits;  conditional E-value: 9e-17
        PAP2  52 akesfPSgHsafafalalllalllrrkrkkig..............lvllalillllavlvalsRlylgvHflsDvlaGlliGialaalay 128
                  ++++PS H++f++++ + lal+l  + k++               ++++ + +  +a+ +a+sR+yl++H++ +v++G ++G+++a++ y
  CCE27598.1  86 KGYGMPSSHAQFVAFWSVSLALFLLLRHKPYAtrqphrarpwslleRTAISMAAGGVAAATAWSRIYLNYHTPRQVFVGSAMGVLVALAWY 176
                 35788**********9999999988888888888*****************************************************9877 PP

>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.4      0.37   1.1e+03      79     101 ..      24      46 ..      21      50 .. 0.58
   2 !   23.5   5.3   9.7e-09   2.9e-05      68     147 ..      94     188 ..      53     202 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.37
        UbiA  79 lgllllalllnpltallgllall 101
                 ++ll+++l l p++++++ ++l+
  CCE27598.1  24 VSLLCAYLALLPQALCVVYATLI 46 
                 45555555555555555555554 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 9.7e-09
        UbiA  68 ealifaivllilgllll................alllnpltallgllalllyvvYtglrlKrrtllgtvvggiafglppllgwaavtgslsllall 147
                 +a ++a+ ++ l+l+ll                + ll  +++ +++ +++++++++ ++l ++t+ ++v++g a+g+++ l+w+ vt  +  + ll
  CCE27598.1  94 HAQFVAFWSVSLALFLLlrhkpyatrqphrarpWSLLERTAISMAAGGVAAATAWSRIYLNYHTP-RQVFVGSAMGVLVALAWYGVTSAVRQTGLL 188
                 4555555555555444457*************************************99*******.*********************998433333 PP

>> DUF212  Divergent PAP2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   6.4e-05      0.19       9      58 ..      57     106 ..      49     118 .. 0.68
   2 !    5.7   0.0    0.0052        16     113     128 .]     156     171 ..     148     171 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.4e-05
      DUF212   9 allawlvaqllKvliellkekkldlkllvstG.gmPSsHsalvtalatavg 58 
                 ++++ + + +l +l++ l++++ +++++ ++G gmPSsH+ +v+  +++++
  CCE27598.1  57 MFAGQMGCEALNFLLKRLIKEE-RPRRIHGKGyGMPSSHAQFVAFWSVSLA 106
                 4455555566666666555544.4666777766********9987666655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0052
      DUF212 113 HtpleVlvGallGiiv 128
                 Htp +V+vG  +G++v
  CCE27598.1 156 HTPRQVFVGSAMGVLV 171
                 *************986 PP

>> NDUF_B4  NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     4e-05      0.12      74     106 ..     153     184 ..     142     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4e-05
                 HH----HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     NDUF_B4  74 pnfrptpktsllGalvgvvpllflyyvlktdrd 106
                  n + tp+++++G ++gv++ l++y v+++ r+
  CCE27598.1 153 LN-YHTPRQVFVGSAMGVLVALAWYGVTSAVRQ 184
                 44.479*******************99988776 PP

>> Phage_holin_3_1  Phage holin family (Lysis protein S)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.026        77      50      97 ..      26      76 ..      24      78 .. 0.82
   2 ?    9.0   0.3   0.00061       1.8      11      66 ..     127     182 ..     121     200 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.026
  Phage_holin_3_1 50 llCgllalavrsllell...glpaslavviggliGflGvekirelakklle 97
                     llC+ lal  + l+ ++    l++  + ++ ++ G +G e++  l+k+l++
       CCE27598.1 26 LLCAYLALLPQALCVVYatlILSTREVEILFMFAGQMGCEALNFLLKRLIK 76
                     89*****99999887664446778888888899999999999999999986 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00061
  Phage_holin_3_1  11 lawlqsaspqiiaavlAlviallrviYdgkswkkvlleallCgllalavrsllell 66 
                      +++l+    ++ a  +A+++a+ r+  + ++ ++v++ +++  l+ala   + +++
       CCE27598.1 127 WSLLERTAISMAAGGVAAATAWSRIYLNYHTPRQVFVGSAMGVLVALAWYGVTSAV 182
                      667777778899999**************************999999877766665 PP

>> DUF3995  Protein of unknown function (DUF3995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.75   2.2e+03      52      59 ..      32      39 ..      20      62 .. 0.48
   2 ?    2.3   0.1     0.066     2e+02      34      71 ..      82     125 ..      52     131 .. 0.67
   3 ?   11.0   5.0   0.00014      0.41      39     113 ..     131     207 ..     117     215 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.75
     DUF3995 52 Allvlala 59
                All+ al 
  CCE27598.1 32 ALLPQALC 39
                33332222 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.066
     DUF3995  34 a.......vPsavatlavallllaaAllvlalarllgaplssrll 71 
                 +       +Ps     +va+  +  Al++l+++++++ ++++r  
  CCE27598.1  82 RihgkgygMPSS-HAQFVAFWSVSLALFLLLRHKPYATRQPHRAR 125
                 444445556666.34568888889999999999888888887765 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00014
     DUF3995  39 vatlavallllaaAllvlalarllgaplssrllrlaawvvaavlllRgilgdfkyvgvfkrvkdtaa...farldtll 113
                   t++  ++ ++aA+ ++ ++ +l  + ++++    a++v + l+++g+  +++ +g+++   d++    f+  d+++
  CCE27598.1 131 ERTAISMAAGGVAAATAWSRI-YLNYHTPRQVFVGSAMGVLVALAWYGVTSAVRQTGLLAMGLDSSLaraFRLRDLVV 207
                 446677777788888888888.889999*******************************9999888555566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1915.55
//
Query:       CCE27599.1  [L=657]
Description: related to HFB30 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-19   70.0  37.3    8.7e-13   48.3   5.3    4.2  4  IBR           IBR domain, a half RING-finger domain
    8.7e-14   51.8   0.0    2.2e-13   50.5   0.0    1.7  1  RWD           RWD domain
    0.00016   21.7   5.7    0.00016   21.7   5.7    3.8  3  zf-RING_UBOX  RING-type zinc-finger
    0.00031   21.0   8.0    0.00031   21.0   8.0    4.0  4  zf-RING_2     Ring finger domain
      0.004   16.8   7.8      0.014   15.1   7.8    2.1  1  zf-RING_11    RING-like zinc finger
  ------ inclusion threshold ------
       0.01   15.7   8.2       0.01   15.7   8.2    4.1  3  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
        0.2   10.2   9.9       0.32    9.5   0.2    2.3  2  TFIIF_alpha   Transcription initiation factor IIF, alpha subu
        9.4    6.2  11.5         30    4.6  11.5    1.9  1  Trypan_PARP   Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   5.6    0.0024       5.5      26      55 ..     221     250 ..     208     256 .. 0.77
   2 ?    1.3   0.1      0.18   4.1e+02      13      27 ..     257     272 ..     251     288 .. 0.75
   3 !   48.3   5.3   3.9e-16   8.7e-13       1      62 []     311     426 ..     311     426 .. 0.95
   4 !   27.9   5.9   9.3e-10   2.1e-06      17      53 ..     449     483 ..     433     497 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0024
         IBR  26 CeaiieksegcksvtCsk...CgfefCfnCkke 55 
                 C+  + +++g   v+C+k   Cg+ fC++C+++
  CCE27599.1 221 CGICLDPKKG---VKCHKmmdCGHVFCLQCLQD 250
                 5544444444...89999999*********986 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.18
         IBR  13 es.dpnlkwCprpdCe 27 
                 ++ + +++ C +p+C 
  CCE27599.1 257 KEgSLSTVRCLTPNCA 272
                 554556899******7 PP

  == domain 3  score: 48.3 bits;  conditional E-value: 3.9e-16
         IBR   1 ekyeklklkkslesdpnlkwCprpdCeaiieksegcks.....................................................vtCskCgf 46 
                 ++y klk+k++le d+++++Cpr++C++++++++++k                                                        C++Cg 
  CCE27599.1 311 KRYVKLKYKTELEADKDTIYCPRQWCNGAARSKKHKKPqldftqsqgteeemanrdsdhgqasdtddvngndeqttesinatkkfqsadllCICEDCGL 409
                 69****************************999995556778888999*****************************************9988****** PP

         IBR  47 efCfnCkkewHegl.sC 62 
                 +fC +C++ wH+++ +C
  CCE27599.1 410 AFCGRCLQTWHGEFvRC 426
                 ************99898 PP

  == domain 4  score: 27.9 bits;  conditional E-value: 9.3e-10
         IBR  17 nlkwCprpdCeaiieksegcksvtCskCgfefCfnCk 53 
                  +  Cp   C+a+++k++gc+++ Cs+C   fC+ C 
  CCE27599.1 449 HTSPCP--TCNAPAQKTHGCNHMICSRCDSHFCYLCS 483
                 4678*9..9***************************7 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   9.9e-17   2.2e-13       3     115 ..      11     178 ..       9     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 9.9e-17
                 HHHHHHHHHHHSTTTCCCCH........T--EE--S-EEEEEEECECCCC................................................. CS
                 xxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxx............................................... RF
         RWD   3 qeqEleaLesIypdefevie........nenysikleikikldededeedse............................................... 46 
                 + +E+e+L++I+p+  +  e        +++y ++le+ ++++++                                                      
  CCE27599.1  11 RLMEVETLAAIFPEIRHSQEasrqdstkTSEYIVELELPVEPNKP------Vtvvflaassassathatsatratrdgqvgdeamstatfkqavttape 103
                 678*************66665666444444444344444444443......1446678***************************************** PP

                 ......TT-CEEEEEEEEE-SSTT.SS--EEEEEECC.SS-HHHHHHHHHHHHHHHHHTTTS--CHHHHHHHHHH CS
                 ....xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD  47 ....feekkkpslkleiklpeeYP.eeaPiislsste.nlpkeqvksleekleelaeenlgepvifalidwlken 115
                        +++p+l ++i+lp  YP eeaP +sl+++  +l  + +  le++  +l+ee  +++v +++id+l+ +
  CCE27599.1 104 pldtLLVSHLPPLCVKITLPDGYPlEEAPLMSLTTEPsWLASTVLRALEDDGPRLWEESGRDMVAYTYIDHLQRE 178
                 ****99***********************999999997788888888**************************87 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   5.7     7e-08   0.00016       1      27 [.     221     255 ..     221     267 .. 0.68
   2 ?    1.7   3.8      0.12   2.8e+02      16      38 ..     407     426 ..     395     434 .. 0.84
   3 ?   -0.7   9.2      0.65   1.5e+03       1      24 [.     453     474 ..     453     506 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7e-08
  zf-RING_UBOX   1 CpIClelft....dPlvlpCGHtFCreClw.....e 27 
                   C ICl++ +    + ++  CGH+FC +Cl+      
    CCE27599.1 221 CGICLDPKKgvkcHKMM-DCGHVFCLQCLQdfyndA 255
                   99****88866543344.9**********6453333 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.12
  zf-RING_UBOX  16 CGHtFCreClwelskslegafkC 38 
                   CG  FC +Cl   + + +  ++C
    CCE27599.1 407 CGLAFCGRCL---QTWHGEFVRC 426
                   9999******...6667777766 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.65
  zf-RING_UBOX   1 CpIClelftdPlvl.pCGHtFCreC 24 
                   Cp C+ + +   ++ +C H +C++C
    CCE27599.1 453 CPTCNAPAQ---KThGCNHMICSRC 474
                   788887663...4449********* PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   8.0   1.4e-07   0.00031       2      33 ..     220     251 ..     219     271 .. 0.82
   2 !    8.4   4.1    0.0012       2.8       9      36 ..     394     422 ..     392     428 .. 0.77
   3 ?    0.5   0.4      0.36     8e+02      37      44 .]     449     457 ..     442     457 .. 0.68
   4 ?   -3.6  13.8       6.9   1.6e+04       3      35 ..     453     487 ..     451     491 .. 0.59

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.4e-07
   zf-RING_2   2 eCpICleelssadsvlll.pCgHvfhreClerw 33 
                 eC+ICl++  ++ +++++ +CgHvf+ +Cl+++
  CCE27599.1 220 ECGICLDPK-KGVKCHKMmDCGHVFCLQCLQDF 251
                 8*****777.6788886669**********874 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0012
   zf-RING_2   9 elssadsvlll.pCgHvfhreClerwlrs 36 
                 +++sad ++++ +Cg  f+  Cl++w  +
  CCE27599.1 394 KFQSADLLCICeDCGLAFCGRCLQTWHGE 422
                 5677777776669**99*********765 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.36
   zf-RING_2  37 sst.CPlCr 44 
                 + + CP+C+
  CCE27599.1 449 HTSpCPTCN 457
                 4456****5 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 6.9
   zf-RING_2   3 CpICleelssads...vlllpCgHvfhreClerwlr 35 
                 Cp C  + ++++    +++  C  +f++ C + wl 
  CCE27599.1 453 CPTCNAPAQKTHGcnhMICSRCDSHFCYLC-SSWLD 487
                 888876665544422233335777788888.57775 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   7.8   6.4e-06     0.014       1      28 [.     220     247 ..     220     248 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.4e-06
  zf-RING_11   1 eCsICLeefkpgqalfilpCsHtFHfkC 28 
                 eC ICL++ k  ++  ++ C+H+F ++C
  CCE27599.1 220 ECGICLDPKKGVKCHKMMDCGHVFCLQC 247
                 9***********************9999 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   8.2   4.5e-06      0.01       1      32 [.     221     254 ..     221     271 .. 0.85
   2 ?    2.4   2.6     0.063   1.4e+02      15      31 ..     405     421 ..     386     430 .. 0.82
   3 ?   -0.4  11.3       0.5   1.1e+03       1      25 [.     453     474 ..     453     486 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.5e-06
                 -TTT-S--SS-E...E-TTS--B-CHHHHHHHHC CS
    zf-C3HC4   1 CpiCleeakepn..elleCkHsfCskCirkilks 32 
                 C iCl+  k  +  ++++C+H fC +C++  +++
  CCE27599.1 221 CGICLDPKKGVKchKMMDCGHVFCLQCLQDFYND 254
                 99*****99888899**************99985 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.063
                 -TTS--B-CHHHHHHHH CS
    zf-C3HC4  15 leCkHsfCskCirkilk 31 
                  +C+ +fC  C++++  
  CCE27599.1 405 EDCGLAFCGRCLQTWHG 421
                 57999********9976 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.5
                 -TTT-S--SS-E.E-TTS--B-CHH CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskC 25 
                 Cp C   a++++    C+H +Cs C
  CCE27599.1 453 CPTCNAPAQKTH---GCNHMICSRC 474
                 889988887766...********** PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00014      0.32     439     480 ..     276     320 ..     256     324 .. 0.80
   2 ?    3.2   4.7     0.012        26     334     380 ..     342     394 ..     336     400 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00014
                  XXXXXXXXXXXXXXX....XXXXXXX-SS--HHHHHHHHHHS-B- CS
  TFIIF_alpha 439 pkssskkslpqtvsks...ksssnkadggvtEeavrryLmrkplT 480
                    ss++k++++ ++ks    s s+  ++g+tEeav+ry   k  T
   CCE27599.1 276 AASSAGKATNARTAKSktlISPSELLQIGLTEEAVKRYVKLKYKT 320
                  34899******99999554455666799**********9866555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.012
                  XXXXXXXX....XXXXXXXXX..XXXXXXXXXXXXXXXXXXXX..XXXXXXXX CS
  TFIIF_alpha 334 skkkkkak....klkkkkkekdkkdSddeedsddsDideedsv..slvkakKk 380
                  skk+kk++    + ++ ++e  ++dSd ++ sd +D++++d +    + a+Kk
   CCE27599.1 342 SKKHKKPQldftQSQGTEEEMANRDSDHGQASDTDDVNGNDEQttESINATKK 394
                  455555441111667777888899************98766540045677775 PP

>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  11.5     0.014        30      51     111 ..     563     633 ..     539     639 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.014
  Trypan_PARP  51 dddtngtdpepepepep.epepepepepep........etepeeepepepepepepepepepe.pepepep 111
                   dd++g d e  p + p +p+ +p +   +        e  p +ep p+p+p+p+p  +p+p+  +p+p+p
   CCE27599.1 563 TDDSEGEDDEALPHQLPvNPNGNPVAVAREaplvlrllEHRPRQEPAPQPQPQPQPRRQPQPQrRQPQPQP 633
                  57777777777777666345555553333345677777777777777777777777777777523455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1165  (0.0649785); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4480.75
//
Query:       CCE27600.1  [L=56]
Description: uncharacterized protein CPUR_01074 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 430.66
//
Query:       CCE27601.1  [L=600]
Description: related to acid phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-31  110.0   0.0    2.9e-31  109.1   0.0    1.4  1  NDT80_PhoG  NDT80 / PhoG like DNA-binding  family


Domain annotation for each model (and alignments):
>> NDT80_PhoG  NDT80 / PhoG like DNA-binding  family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.0   1.6e-35   2.9e-31       1     185 [.     166     329 ..     166     330 .. 0.90

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 1.6e-35
  NDT80_PhoG   1 ewvcyrRNyfqvvasfeleglslekfvkhsftilenelesgeklpikyfalkikatknseddseielvqhtakrdkgpqfaPeivalvpkelpkhqlir 99 
                 e++cyrRN+fq+++s+ +     ++   +++       e +e++p+++++++++a++++ d+++++l+      + +p+++Pei +  ++e+ + +li 
  CCE27601.1 166 ELTCYRRNLFQISGSLVM-----PRGQLSVVN------EANETRPVNNLEVSVSAIESV-DGNPVRLIVI--PWKTPPPNSPEISQGPDQEPSALPLIP 250
                 68****************.....565555665......99*******************.5********4..566789999999999999998888888 PP

  NDT80_PhoG 100 easnvrnesklkkfdeikkvarfeRlqFksatannkrrkq.qrffkLvvkllaivekeeskgteikiaelespplIVRGrsPsnyes 185
                       + +     + +  ++ ++RlqF+ atann+rrk+ q++f+L++k+ +    +  ++t++ +ae+ + p++VRGrsP+n++ 
  CCE27601.1 251 FDDGGSEGEG----EFAVYPIGWRRLQFRIATANNGRRKElQQHFVLHLKVFG----TLPDNTKVTLAEAITSPIVVRGRSPRNFQA 329
                 7777777666....5899**********************************7....9***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 4242.20
//
Query:       CCE27602.1  [L=273]
Description: uncharacterized protein CPUR_01076 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-18   66.9   0.2    4.1e-18   65.4   0.0    1.8  2  DUF2011   Fungal protein of unknown function (DUF2011)


Domain annotation for each model (and alignments):
>> DUF2011  Fungal protein of unknown function (DUF2011)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   2.3e-22   4.1e-18       1      87 [.      88     167 ..      88     169 .. 0.96
   2 ?   -1.6   0.2      0.19   3.4e+03      58      73 ..     225     240 ..     181     254 .. 0.60

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 2.3e-22
     DUF2011   1 feFrLFssaakaaktqklkirLrspspeegeggfivpeRpksYYfaeplseeereqfeeaAvsgedvlaeaksrwpgcelpwrvihl 87 
                 feFrLFss  +      +k++L+++s+  +egg + + Rp+s+Y+a++  ++ +++++ aAvsgedvl +++++ +g+++pw+v+++
  CCE27602.1  88 FEFRLFSSRLP------AKVTLEDDSAPPQEGG-LAHPRPQSFYLANHIPPALQNEYRFAAVSGEDVLLQSHRPSWGMAYPWKVTRI 167
                 9*******975......9**********9****.99*************************************************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.19
     DUF2011  58 eeaAvsgedvlaeaks 73 
                 ++ A++ e+ l+e+k+
  CCE27602.1 225 TKRALDKEEQLKEKKK 240
                 3445555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2252  (0.125607); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2042.00
//
Query:       CCE27603.1  [L=1212]
Description: HAM-2 protein required for hyphal anastomosis (HAM-2) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.1e-216  718.2  20.9   3.5e-215  715.5   6.2    3.2  2  DUF3402      Domain of unknown function (DUF3402)
    1.8e-96  322.7   0.5    1.8e-96  322.7   0.5    2.3  2  N1221        N1221-like protein
  ------ inclusion threshold ------
      0.015   15.7   6.9      0.015   15.7   6.9    2.7  3  LPP20        LPP20 lipoprotein
        1.8    8.5  30.4       0.13   12.1   2.1    2.7  2  SRP-alpha_N  Signal recognition particle, alpha subunit, N-te


Domain annotation for each model (and alignments):
>> DUF3402  Domain of unknown function (DUF3402)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   6.8      0.14   6.5e+02     118     159 ..      74     114 ..      58     133 .. 0.37
   2 !  715.5   6.2  7.7e-219  3.5e-215       1     462 []     539    1180 ..     539    1180 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.14
     DUF3402 118 skakeqsinilaaelseeeelseksasgreknkkkgeakels 159
                 ++ake    + a+e+++++e+++k+++++++++++++++ + 
  CCE27603.1  74 KAAKERA-AKVAQEQRQKQEQRQKQQQQQQQQQQQQQQNPPP 114
                 2222222.2222222222222222222222222222222333 PP

  == domain 2  score: 715.5 bits;  conditional E-value: 7.7e-219
     DUF3402    1 PasilEAgelfskrvrmtramrqlweerekflkfergweeddeeedd.................dleeltleekee..................... 59  
                  PasilEAgelfs+rvrmtramrq+we+re+fl+fergw+edd+++dd                 dl +lt+ee+e+                     
  CCE27603.1  539 PASILEAGELFSTRVRMTRAMRQMWEAREQFLQFERGWAEDDDDDDDdvegdhgqgdddvesllDLVDLTPEEREIlrevkavqheitksnrsrkst 635 
                  9***************************************996666679**************************9********************* PP

     DUF3402   60 ........eeeevdegpkkeelseeekkrleavekfYkeaLphLqslvivllklilanvtalvtqqskakeqsinilaaelseeeelseksasgrek 148 
                          +e+evd+gp++++lse++k+rl ave+fYk+aLphLqslvivll++il+nvta+vtqqs++++q+     ++  +  +++++  +  + 
  CCE27603.1  636 arpiqyshTEVEVDFGPHPDRLSERDKQRLVAVERFYKDALPHLQSLVIVLLRPILVNVTAVVTQQSNQQMQMNAGGPMAGGRGYNNGGPYGNAPRG 732 
                  ********9************************************************************9998544444333333333322222111 PP

     DUF3402  149 nk.kkgeak.........elskeeldaartrEitlkAvsgillllLKwfklshvlkfeyltqlLldsnylpLvlklfahqdvqqvveskndreelsF 235 
                     +    +         e+s+ee+daartrEit+kA++gil+llLKw++lshvlkfeyltqlLldsny+pLvlklfahqdvqqvv+sk+dr+e+sF
  CCE27603.1  733 MMdQ----SgqtmaqeelEPSPEEVDAARTREITTKAMTGILVLLLKWLRLSHVLKFEYLTQLLLDSNYIPLVLKLFAHQDVQQVVDSKMDRVENSF 825 
                  1111....1223355678******************************************************************************* PP

     DUF3402  236 Fqfcnlrskekekeeseseeeeee............................eseddaapppikrkrssekaeeeeee................... 285 
                  Fqfcnlrsk+++k+es+  +e+ee                            es+ddaapppikr+r s+ka+e++++                   
  CCE27603.1  826 FQFCNLRSKFRDKSESDLGNENEEsnqvgetaqtdpngqqkppheseldtaqESDDDAAPPPIKRNRPSAKATEAQDTtdpkagygaearppvhmse 922 
                  ********************99999*************************************************99999****************** PP

     DUF3402  286 .............................................................................eeeeeeatrpevdelgyPvn 305 
                                                                                               ++++ +++rp+vdelgyP+n
  CCE27603.1  923 rdakywaayqawcqaeaesnaqaearrkqredaakeesnetsnpddnepsangnpdepeqppkeqqqqqrqreeeedTTSGGGPPRPRVDELGYPIN 1019
                  ***************************************************************************9999999*************** PP

     DUF3402  306 plpeep....itdfswrnffslinlLrilqkicknkahRnllLvqyksseiLkkaLkvpqpeLrlytLKllKnqvpYcGrkWrqsNMrvitaiYlhc 398 
                  plpee+    itdfswrnffslin+Lr+lqk+cknkahRnl+Lvqykss+iL+kaL+vpqp+LrlytLKl+KnqvpYcGrkWrqsNMrvitaiYlhc
  CCE27603.1 1020 PLPEEEqqplITDFSWRNFFSLINYLRVLQKMCKNKAHRNLFLVQYKSSTILRKALRVPQPQLRLYTLKLVKNQVPYCGRKWRQSNMRVITAIYLHC 1116
                  ****99999**************************************************************************************** PP

     DUF3402  399 rpeLrDdWlagsdvdaeveealplEqaLrglthwfnlrrYpdkmaaeeraalreeqdffkrele 462 
                  rpeLrD+Wlagsdvda+v++alplEqaLrglthw+nlrrYpdk+a++ raalreeqdff+rele
  CCE27603.1 1117 RPELRDEWLAGSDVDADVDSALPLEQALRGLTHWINLRRYPDKIARDLRAALREEQDFFSRELE 1180
                  ***************************************************************8 PP

>> N1221  N1221-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.3   7.6         4   1.8e+04     129     148 ..      85     105 ..      73     111 .. 0.38
   2 !  322.7   0.5    4e-100   1.8e-96       2     289 .]     137     431 ..     136     431 .. 0.95

  Alignments for each domain:
  == domain 1  score: -8.3 bits;  conditional E-value: 4
       N1221 129 ekereds.edekkaeeqqlqe 148
                 +++r+++ +++k++++qq+q+
  CCE27603.1  85 QEQRQKQeQRQKQQQQQQQQQ 105
                 222332212222222222222 PP

  == domain 2  score: 322.7 bits;  conditional E-value: 4e-100
       N1221   2 aydFeykdsdsleeEldeWFsys..dvvlllkakkaFeskweevseeeeeWedvdederkkfverlleslessdka.RlealeallYialGtwge.... 93 
                  ydF+y+d+++++eE+deWF y+  ++v+l++a++aFe++w+++++ + +W+d+d+d+r++fv+  + +++s+d+a +  ++++++Y++lG+wg+    
  CCE27603.1 137 PYDFVYEDMGPHAEEIDEWFVYQfwQWVRLNAAQTAFEWHWNQETDGQASWDDADQDTRTRFVRAAIAGVQSNDAAlKSASIGKIVYLVLGRWGDtama 235
                 6***********************************************************************96666********************** PP

       N1221  94 ........tkstseqleaikenvkllreagglealwealkkafekeredsedekkaeeqqlqeesselallltilYllvevareeseddeelreellel 184
                         + ++ +ql+aike+vk+l ++++++++weal+++fe++++ + +e+    ++ qe++ el++l+ti+Y+ ++ +++++ed +  +++llel
  CCE27603.1 236 ttvdedsrSIASASQLQAIKEGVKCLTSLEAFPVIWEALRSCFESHWSGDIHEQ----ASPQEAQDELMNLMTIMYIAIQETLNDPEDTTLSYKALLEL 330
                 ******999999*************************************94444....34444555********************************* PP

       N1221 185 epnllqflveliaklrwddakslplkkillLlwKllLlvfGgteelkevkkalrelhglseeskekekkplitasPldYhaFrqeitskYPaynppepl 283
                 ep+l++++++ ++klrwdd++ +pl++i+lL+wK++LlvfGgt++++ +k++++e++    e+ + +k+ +itasPldYh+FrqeitskYPay+pp+p 
  CCE27603.1 331 EPSLVDYMLTTTSKLRWDDQNAMPLTQIFLLFWKSILLVFGGTKDVAALKEVMSEMK----EDGSADKTTTITASPLDYHVFRQEITSKYPAYIPPQPR 425
                 *******************************************************44....5677788999**************************** PP

       N1221 284 lpleae 289
                 +p+e+e
  CCE27603.1 426 IPIEDE 431
                 ***986 PP

>> LPP20  LPP20 lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   6.9   3.2e-06     0.015       7      64 ..      49     108 ..      42     123 .. 0.74
   2 ?   -3.4   0.2       2.9   1.3e+04      54      76 ..     619     641 ..     610     646 .. 0.74
   3 ?   -1.9   1.0         1   4.6e+03      21      52 ..     939     968 ..     925    1001 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.2e-06
       LPP20   7 spppsqky..llgvGeaeslraAkqnAlrdiaeqiqvqvksssstqetsaavqnsettne 64 
                 spp++q+     g + a + raA+q+A+++ a+++ +++ ++++++++++++q+++++++
  CCE27603.1  49 SPPDYQRNpfAAGLAAAAEERAAEQKAAKERAAKVAQEQRQKQEQRQKQQQQQQQQQQQQ 108
                 55666666555556666666*******************999999877744444444443 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.9
       LPP20  54 aavqnsettnesvsqvvesvlrg 76 
                 +avq+ +t +++ ++++ + ++ 
  CCE27603.1 619 KAVQHEITKSNRSRKSTARPIQY 641
                 67888899999999888888764 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1
       LPP20  21 aeslraAkqnAlrdiaeqiqvqvksssstqet 52 
                 aes  +A+++A+r+  e   ++ ++ +s+ ++
  CCE27603.1 939 AES--NAQAEARRKQREDAAKEESNETSNPDD 968
                 444..788888888777666666555555443 PP

>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.1   2.9e-05      0.13      99     140 ..      69     110 ..      22     195 .. 0.67
   2 ?    0.9  20.6     0.076   3.4e+02     100     239 ..     846     997 ..     811    1013 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.9e-05
                  HHHXXXXXXXXX........XXX..XXXXXXXXXX.....XX CS
  SRP-alpha_N  99 relEasaeaakkskaakepkamksfeeskkskktvksskedk 140
                  r +E++a+++++ k+a+e++++++  ++++++++++++++++
   CCE27603.1  69 RAAEQKAAKERAAKVAQEQRQKQEQRQKQQQQQQQQQQQQQQ 110
                  233333333333333333333221111111111111111111 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.076
                  HHXXXXXXXXX........XXX..XXXXXXXXXX.....XX.XX...........XXXXXXX...X......XXXXXXXXX..............XXX CS
  SRP-alpha_N 100 elEasaeaakkskaakepkamksfeeskkskktvksskedkkpegkkkkgakkekdasddstpsat......petsrpstp..............sgl 177
                  e E+s++  ++ +++ + ++ k+  es+ ++ ++++  ++ +p+ k +++++k+++a+d+++p+a       p       p              +  
   CCE27603.1 846 ENEESNQVGETAQTDPNGQQ-KPPHESELDTAQESDDDAA-PPPIKRNRPSAKATEAQDTTDPKAGygaearP-------PvhmserdakywaayQAW 934
                  44555444444444333333.5555555555555443333.33455555555555543333333333222221.......133444455568776333 PP

                  XXXX.XXX.XXXXXXXXXXXXXX..XXXXXXXXXXX....XXXXXXX...XXXXXX.XXXXXXX CS
  SRP-alpha_N 178 ltakeagptaedvsrrarkkankkrssagassgdeakasksskkkkkkp.kkkgkk.aRvWdad 239
                   +a+++++++++  r++r+ a+k+ +s+++s+ d++++s++++++++++ +k++++ +R+ +++
   CCE27603.1 935 CQAEAESNAQAEARRKQREDAAKE-ESNETSNPDDNEPSANGNPDEPEQpPKEQQQqQRQREEE 997
                  333333444566666777666644.556666666666555555554443133333326655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3094  (0.17257); expected 358.6 (0.02)
Passed bias filter:                     1100  (0.0613531); expected 358.6 (0.02)
Passed Vit filter:                       282  (0.0157287); expected 17.9 (0.001)
Passed Fwd filter:                       115  (0.00641419); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.92u 0.41s 00:00:02.33 Elapsed: 00:00:00.60
# Mc/sec: 6122.72
//
Query:       CCE27604.1  [L=270]
Description: uncharacterized protein CPUR_01078 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2056.78
//
Query:       CCE27605.1  [L=954]
Description: related to beta-1,3 exoglucanase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-55  183.5  44.3    9.9e-19   67.3   8.9    3.5  3  WSC         WSC domain
    8.5e-20   71.4   0.0    1.6e-19   70.6   0.0    1.4  1  peroxidase  Peroxidase


Domain annotation for each model (and alignments):
>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   8.9   1.1e-22   9.9e-19       1      81 [.     605     682 ..     605     683 .. 0.97
   2 !   66.9  11.0   1.5e-22   1.4e-18       2      81 ..     717     793 ..     716     794 .. 0.97
   3 !   61.3   8.4   8.2e-21   7.4e-17       2      82 .]     823     900 ..     822     900 .. 0.94

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 1.1e-22
         WSC   1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCG 81 
                 y++C+t++  s+r+lg+ s  ++tmt ekCa++C+   y y g+e+g+eCyCgnsl+++++ a+ ++Cn++C Gd+sq+CG
  CCE27605.1 605 YVACWTEG-VSVRALGGISFVNDTMTLEKCAKYCS--AYVYWGTEYGRECYCGNSLDKSSAAAPLNDCNMVCGGDHSQYCG 682
                 89****99.79***********************9..89*****************************************9 PP

  == domain 2  score: 66.9 bits;  conditional E-value: 1.5e-22
         WSC   2 lGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCG 81 
                 +GC+t++ + +r+lg++ + +++mt+e+Caa+Ck   yky+g+e+g+eCyCg+ l+++++ a+  +Cn++CsGds ++CG
  CCE27605.1 717 VGCWTEG-NGVRALGQGLTISDKMTNEACAATCK--AYKYFGTEYGTECYCGSYLSDSSKTAPLGDCNMPCSGDSYEYCG 793
                 7****99.9************************9..99*****************************************9 PP

  == domain 3  score: 61.3 bits;  conditional E-value: 8.2e-21
         WSC   2 lGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82 
                 +GC t++ + +r+l++    +s+mt++ Ca++Ck   y+y+g+e+g+eCyCg+sl+a++  a+ ++C + C+G+ s++CGg
  CCE27605.1 823 VGCQTEG-SGTRALSGPVVAHSNMTNQVCATWCK--DYEYFGTEYGRECYCGHSLAASSLVAPATECRMLCEGNISEYCGG 900
                 79***99.67788888889999***********9..99******************************************8 PP

>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   1.7e-23   1.6e-19      11     203 ..      58     237 ..      45     283 .. 0.83

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 1.7e-23
                 CTTTHCHHHHHHHHHHHTT.......SSTTSCHHHTCCHHCSGGGTTTHHHHHHHHHHHHHCTT.....S-HHHHHHHHHHHHHHCT...T--..--EE CS
  peroxidase  11 adrdmgpsllrlafhdcfv.......gGcdgsvlllepektapaNaslrkgldvldaikakleaacpgvvScADlialaardavela...ggplvpvsl 99 
                 + r+ ++++lr afhd  +       gG dgs +    e + ++N++    + +l+ + + + +++p    ++Dl+al+   +v  +    gp+vp++ 
  CCE27605.1  58 PGRRNAAEWLRSAFHDMSTankffntGGLDGSLQY---ELDNGENTGPG-HRTTLQFMSTYVTTRSP----LSDLLALGVYMSVRSCggaDGPIVPFRA 148
                 46788899********9999999999******877...9999****999.89999999999998766....9**************97777899***** PP

                 ---S-SSGGGS-S...-.-TS-HHHHHHHHHHHT--HHHHHHH.HGGGGC-EESHH.................SS-GGGT....HHS.........EET CS
  peroxidase 100 GRrDatessasevsnlPdptasvdelrdkfarkgltdeelvaL.sGaHtiGkahcssfsrly.a.....aadpaldaayaaekCasgntelvdld.tpt 190
                 GR+Da+ +    v   P+p++sv +  ++f+r+g+t+ee++   + +HtiG  h ++f  l                              ++ld t  
  CCE27605.1 149 GRKDASAAGSMGV---PQPQNSVVTFQQQFERMGFTTEEMIQVtACGHTIGGVHSEEFPELIpPkgivnG--------------------NAPLDsTDA 224
                 ********99988...**************************************9999865522222220....................245665666 PP

                 S-STHHHHHHCCT CS
  peroxidase 191 kfdnsyfknllek 203
                  fdn++ ++ l++
  CCE27605.1 225 VFDNKVVTEYLSG 237
                 7777766666663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 6577.37
//
Query:       CCE27606.1  [L=132]
Description: uncharacterized protein CPUR_01080 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-33  115.2   0.0    1.6e-33  114.9   0.0    1.1  1  CENP-S           CENP-S protein
    2.2e-06   27.7   0.0    2.8e-06   27.4   0.0    1.2  1  CENP-T_C         Centromere kinetochore component CENP-T hist
     0.0021   18.0   0.0     0.0028   17.6   0.0    1.2  1  TFIID-18kDa      Transcription initiation factor IID, 18kD su
     0.0037   17.3   0.0     0.0077   16.2   0.0    1.5  2  Bromo_TP         Bromodomain associated


Domain annotation for each model (and alignments):
>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.0   3.5e-37   1.6e-33       1      76 []      13      88 ..      13      88 .. 0.99

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 3.5e-37
      CENP-S  1 erLKaalwysvgkiveeeaaekeveatkqfiaaltelvykqlenlakDLeaFakHAkRstittdDvlLlaRrnesL 76
                +rLKaalw++vg+iv+ee+++++++at+qfi+altelv++q+en+a DLe+Fa+HA R+ +tt+DvlLlaR+n++L
  CCE27606.1 13 QRLKAALWFAVGQIVDEECLRRNRNATPQFIGALTELVWTQIENIAIDLESFANHASRENVTTEDVLLLARKNPDL 88
                79************************************************************************97 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   6.2e-10   2.8e-06      33      78 ..      41      86 ..      22     104 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 6.2e-10
    CENP-T_C 33 ealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqr 78
                + + al++     +e ++ DLe +a+Ha+R  + ++Dv+lL +++ 
  CCE27606.1 41 QFIGALTELVWTQIENIAIDLESFANHASRENVTTEDVLLLARKNP 86
                5556666666777899*************************99854 PP

>> TFIID-18kDa  Transcription initiation factor IID, 18kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.3e-07    0.0028      26      84 ..      44     102 ..      33     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6.3e-07
                  HHHHHHHHHHHHHHHHHHHC-XXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIID-18kDa  26 qlledlvrgyliellqqaakvaklrgsrkitlEDllfliRkDkkKlnRlkellslkell 84 
                    l +lv +++ ++ +   + a++  ++++t ED+l l Rk +   + + +++  ++ +
   CCE27606.1  44 GALTELVWTQIENIAIDLESFANHASRENVTTEDVLLLARKNPDLQGIMADFVQERKDI 102
                  56899************************************998777777777766666 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.7e-06    0.0077      24      65 ..      38      79 ..      36      83 .. 0.91
   2 ?   -3.0   0.0       1.7   7.8e+03      32      42 ..      88      98 ..      87      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.7e-06
                E-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SS--HHHHH CS
    Bromo_TP 24 aeesaLEtLteiaqkYirelgeqaksfaehagRseptlkDvv 65
                a++  + +Lte++ + i++++ + +sfa+ha R  +t +Dv 
  CCE27606.1 38 ATPQFIGALTELVWTQIENIAIDLESFANHASRENVTTEDVL 79
                56677889********************************96 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.7
                HHHHHHHHHHH CS
    Bromo_TP 32 LteiaqkYire 42
                L++i++++++e
  CCE27606.1 88 LQGIMADFVQE 98
                78999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1055.07
//
Query:       CCE27607.1  [L=446]
Description: probable saccharopine reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-90  303.5   0.0    2.9e-90  303.0   0.0    1.3  1  Sacchrp_dh_C     Saccharopine dehydrogenase C-terminal domain
      7e-24   84.5   0.6    1.1e-23   83.9   0.6    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    0.00011   22.3   0.1    0.00025   21.1   0.1    1.7  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    0.00036   20.5   0.2    0.00062   19.7   0.2    1.4  1  NAD_binding_10   NAD(P)H-binding
  ------ inclusion threshold ------
      0.097   12.2   0.2       0.38   10.3   0.1    2.0  2  IlvN             Acetohydroxy acid isomeroreductase, NADPH-bi


Domain annotation for each model (and alignments):
>> Sacchrp_dh_C  Saccharopine dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.0   0.0   8.1e-94   2.9e-90       1     265 []     124     438 ..     124     438 .. 0.93

  Alignments for each domain:
  == domain 1  score: 303.0 bits;  conditional E-value: 8.1e-94
                   BTTTBHHHHHHHHHHHCCCHTTBECCCCCCCCCCCCECCCCESTTCEEESS-HHHHHHHCCSEEEEEETTEEEECTCCCSGCC.TCEEECCCCCEEC CS
  Sacchrp_dh_C   1 GldPGidhllamkaidevkakggkiesflsycgglpapeasdnplgYkfsWspegvlreltnpakvlengqvkevpgsellkgakkpiyilpglsle 97 
                   GldPGidhl+a+k+idev+a+gg+i+sflsycggl ape+sdnplgYkfsWs +gvl++l+npak++++g+  e+ +++l+ +a kp++i+pg+++ 
    CCE27607.1 124 GLDPGIDHLYAVKTIDEVHAAGGQITSFLSYCGGLAAPECSDNPLGYKFSWSSRGVLLALRNPAKIIQDGKMFEIASKDLMGTA-KPYFIMPGYAFI 219
                   9***************************************************************************9***9766.89999******* PP

                   TTECEEECTHCHHHHHHC.SCSEEEEEEEEEHHHHHHHHHHHTTT--SCEC..C.........................................CC CS
  Sacchrp_dh_C  98 gypnrdslpyeelyglpeaktlfrgtlrypgfsellkslkelGllseepke..e.........................................al 151
                   +ypnrds  y+e y++peakt++rgtlry+gf +++k l+++G+l+++p +  +                                         +l
    CCE27607.1 220 AYPNRDSSVYAERYHIPEAKTIIRGTLRYQGFAAFIKCLVQMGFLEDTPIDalKspipwnqatqailgapssdpkeleafitskvewesaedrarIL 316
                   ************************************************955464899**********************999999999999988855 PP

                   CC..HH....ST..T.C.EHHHHHHHHCCHHCCCCTTEEEEEEEEEEEEEE.TTSEEEEEEEEEEEEE..EHHSSSHHHHHHHHHHHHHHHHHHTTS CS
  Sacchrp_dh_C 152 ka..wl....se..g.e.spldvlaalLekklalepgerDlvvlqhefgie.sdgkkkekktstlvgy..deegssamaktvGvpaaiaaklildgk 235
                   ++  w+    +e  +   +pld+l+a+Le+k+++e+gerD+v+lqh+f+i  +dg++ e++tstlv+y  +  ++samak vGv+ a+aak+ildg+
    CCE27607.1 317 SGlrWIgilsDEkiTpRgNPLDTLCAVLEQKMQFEEGERDMVMLQHKFEIThKDGST-ETRTSTLVEYgnE--KYSAMAKLVGVTGAVAAKQILDGT 410
                   5566666664234534457*************************************8.********99533..9*********************** PP

                   CTSSEEEEGGGS.CHHHHHHHHHHHHHC.T- CS
  Sacchrp_dh_C 236 ikkrGvvtpeelvdpeiyeplleeLeke.Gi 265
                   ++++Gv++p   ++ +i++p+++eL+++ Gi
    CCE27607.1 411 LSEKGVLAP---MTAKINNPIMKELKEKyGI 438
                   *********...8999**********98786 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.6     3e-27   1.1e-23       1     130 []       6     120 ..       6     120 .. 0.96

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 3e-27
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT- CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCietgv 94 
                      vl++GaG+v ++++++l + + +   +tva+r+++ ++ la    ++ ++ai+ld++n+ea L+a ++++dlv++l+p+i++++v+k +i+++ 
       CCE27607.1   6 VLMLGAGFVTKPTLDVLTDAG-I--PVTVACRTLQTAKDLAG--DNKLATAISLDVNNDEA-LDAEVAKHDLVISLIPYIFHATVIKSAIRKKK 93 
                      89*****************97.6..7**********999987..67889************.******************************** PP

                      EEEESS-BCGCCSCHCCSHHHHHTHHHHHHCTSEEE CS
  Sacchrp_dh_NADP  95 hyvdtsiskeertnyalreavlklkekakeagvtav 130
                      ++v+ts+         +++a+++l++++k+ag+t++
       CCE27607.1  94 NVVTTSY---------VSPAMMELDQQCKDAGITVM 120
                      *******.........******************97 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   6.9e-08   0.00025      11      83 ..       2      76 ..       1     112 [. 0.77

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 6.9e-08
                  TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-E...EEEGCGHHHHHHT-SEEEE-S CS
  Shikimate_DH 11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeie...alkleelkellaeadvvisat 83
                  +++ vl++GaG + + ++  L ++g+  v+va Rtl+ ak+la + k + +    + + e l++ +a+ d+vis +
    CCE27607.1  2 AQQSVLMLGAGFVTKPTLDVLTDAGIP-VTVACRTLQTAKDLAGDNKLATAIsldVNNDEALDAEVAKHDLVISLI 76
                  6899**********************9.***************887655444000444456899999999999854 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   1.7e-07   0.00062       4      69 ..      12      88 ..      10     143 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.7e-07
                    SHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.CTTTCEEEE--TT-CCHHHHHHTT-SEEEES-...........- CS
  NAD_binding_10  4 GkvGrllvkellargghevtalvRnpeklaele.aeeglevvegdvtdvedlaealkgadaVvsal...........g 69
                    G v +  ++ l ++ g++vt+  R+ + +++l+ +++ ++++++dv++ e+l + ++ +d V+s +           +
      CCE27607.1 12 GFVTKPTLDVLTDA-GIPVTVACRTLQTAKDLAgDNKLATAISLDVNNDEALDAEVAKHDLVISLIpyifhatviksA 88
                    66666677778889.5****************96668889***********************988666554444432 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00011      0.38       4      84 ..       3      92 ..       1     103 [. 0.73
   2 ?   -1.3   0.0      0.38   1.4e+03     118     149 ..     113     145 ..     111     160 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
                TS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-......HHHHHHHHTT-EEEE...HHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG CS
        IlvN  4 gkkiaviGyGsqGhaqalnlrdsgldvvvglregs......ksvkkAkeegfevlt...vaeavkkadvvmiliPDelqkevyeeeiepn 84
                ++ + ++G G   +     l d+g+ v+v+ r+ +         k A++ +++v +   ++  v+k d+v+ liP  ++++v++++i+++
  CCE27607.1  3 QQSVLMLGAGFVTKPTLDVLTDAGIPVTVACRTLQtakdlaGDNKLATAISLDVNNdeaLDAEVAKHDLVISLIPYIFHATVIKSAIRKK 92
                5678888999999999999***********9988833333223344555555554411123347889*****************999864 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.38
                 SS-SHHHHHHHHTT----EEEEEE.E-SSS-HH CS
        IlvN 118 kgpGhlvreeyeegkGvpaliave.qdasgkak 149
                 k  G +v++e     G+ +l+av+  d+ + a 
  CCE27607.1 113 KDAGITVMNEIGLDPGIDHLYAVKtIDEVHAAG 145
                 66788999999999999*****99534444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3447.92
//
Query:       CCE27608.1  [L=528]
Description: related to dna polymerase delta small subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-49  166.2   0.0    8.4e-49  165.8   0.0    1.2  1  DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
    3.9e-38  130.5   0.0    6.6e-38  129.7   0.0    1.4  1  DNA_pol_D_N  DNA polymerase delta subunit OB-fold domain


Domain annotation for each model (and alignments):
>> DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8   0.0   9.3e-53   8.4e-49       1     210 [.     238     476 ..     238     477 .. 0.95

  Alignments for each domain:
  == domain 1  score: 165.8 bits;  conditional E-value: 9.3e-53
                  EEEEES--S-TT---....-HHHHHHHHHHH.......HTT--SEEEEES-SSBTTSHHHHHT---..........S--SSHHHHHHHHTHHHHTTS- CS
  DNA_pol_E_B   1 vvivsglnldndnrs....leaLrkiLqgya......peesppdvlilaGnfvdaahkaiasskvs..........tdekkenfdalalllsilesll 78 
                  ++ivsgl ++++n s    l +L+++L g a      ++++++++li+aGn++++a+ a+ +++            +d++ +n +++ l+++++++ll
   CCE27608.1 238 IAIVSGLAFSTTNAShaleLALLQEYLLGEAlcpadqEQAASITRLIIAGNSISTAAVAEPKHEDVtakkankkygYDASAYNALPSHLFDEFISQLL 335
                  79********9999999999****************999***************876555444333599999************************** PP

                  TTSEEEEE--TTBTT-S-SBSB----TTTTT--TTT...................EEE--BSEEEEETTEEEEE--S-HHHH---EEESHHHHHS-HH CS
  DNA_pol_E_B  79 ekttvvlvPgpnDpanstvlPqqPlprlllsrikrvfk................elklvtNPsrielnsvevvltsddivkdlkreslkesntdverl 160
                  ++++++l+Pg++Dpan+ ++PqqP++ +++++++++ +                +l+ vtNP++ e++++++++t +++v+d++++  +e++      
   CCE27608.1 336 PSIPITLLPGAQDPANA-SYPQQPIHMAMFPQSRPYGPdpaaaagtatesqqpgWLDAVTNPWEAEIEGWRFLGTGGQNVDDVFKYLDSEDR------ 426
                  *****************.******************99******************************************************...... PP

                  HHHHHHHHHHTBS---SS.--B-GGGGGGGB-GGG---SEEE---SS--EE CS
  DNA_pol_E_B 161 rklvktildqrhlaPlap.tlrpvswdkddalvleplPdvlvlpdelpeFa 210
                  + ++++++++r+ aP+ap tl+++++++d+++vl+ +P+v+++++ ++ F 
   CCE27608.1 427 LGMMEAMCRWRCCAPTAPdTLWSYPFQEDEPFVLKACPHVYFVGC-QSRFS 476
                  *********************************************.88776 PP

>> DNA_pol_D_N  DNA polymerase delta subunit OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7   0.0   7.4e-42   6.6e-38       1     130 []      47     185 ..      47     185 .. 0.95

  Alignments for each domain:
  == domain 1  score: 129.7 bits;  conditional E-value: 7.4e-42
  DNA_pol_D_N   1 QYaniYfaRleqlkprlleaakekw......skeelkvnrildlkegeecivvGtiykemklkpsvlkeiakedesa.pqaerkkyvse..kdellLE 89 
                  QY ++Yf+Rl+++kp + e a ++w       +++++v+r+ld+++g+ c+v+Gt+y++m+lkp++l++++k+++++ p ++++ y+s+   d+++LE
   CCE27608.1  47 QYGDMYFLRLAKIKPAVEEVATASWdgtvigGEQVKRVDRVLDVRQGNLCWVAGTVYMHMPLKPNILEDVSKDKWISaPIPTQQAYFSPdgADQVMLE 144
                  9************************999998777999**********************************999976156789999*9999******* PP

  DNA_pol_D_N  90 DesgrvrLsgsgieseklvtGvvvavlGvetengdfeVedi 130
                  D+sgr+rL+g+ ++   lvtG+++av+G+e+++g+feV di
   CCE27608.1 145 DDSGRIRLIGDLLQTIPLVTGCIMAVMGTENSSGEFEVIDI 185
                  **************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3962.03
//
Query:       CCE27609.1  [L=310]
Description: uncharacterized protein CPUR_01083 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-05   25.7   2.4      0.026   15.0   0.3    2.3  2  DUF3486          Protein of unknown function (DUF3486)
  ------ inclusion threshold ------
      0.037   14.3   0.8         10    6.5   0.1    2.5  2  Nab2             Nuclear abundant poly(A) RNA-bind protein 2 
      0.038   14.4   0.6        2.5    8.5   0.0    2.5  2  DUF3496          Domain of unknown function (DUF3496)
      0.042   13.6   6.1        2.8    7.7   0.8    3.5  3  Raf1_HTH         Rubisco accumulation factor 1 helix turn hel
      0.047   13.6   0.2        4.5    7.2   0.1    2.5  2  DUF433           Protein of unknown function (DUF433)
       0.12   12.0   0.1       0.19   11.4   0.1    1.2  1  Borrelia_orfA    Borrelia ORF-A
       0.13   12.7   0.8        8.3    6.9   0.2    2.8  3  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D
       0.15   11.9   0.3         24    4.9   0.0    2.5  2  HTH_23           Homeodomain-like domain
        1.7    9.2   8.8          5    7.7   0.4    2.7  3  MyTH4            MyTH4 domain


Domain annotation for each model (and alignments):
>> DUF3486  Protein of unknown function (DUF3486)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3   1.3e-05     0.026      16      60 ..      13      56 ..       9      62 .. 0.89
   2 !   10.6   0.1   0.00028      0.56      11      44 ..      63      95 ..      58     107 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
     DUF3486 16 eeLdeaLrekgftqdeIyeelnallaerGeykiSkSalnryaqrl 60
                e +  +L+ +g++q+eI+ee+na+l ++ +  iS   l+ry q++
  CCE27609.1 13 ELI-LTLTREGISQEEILEEVNAQLVAQDQRTISLRTLQRYLQEW 56
                444.7899*********************9*************97 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00028
     DUF3486 11 PeevreeLdeaLrekgftqdeIyeelnallaerG 44
                Pe+vre + ++L + g +qdeI+ee+n++l ++ 
  CCE27609.1 63 PESVRELI-QTLLQDGCHQDEILEEVNTQLVAQN 95
                999**999.66666677789********998765 PP

>> Nab2  Nuclear abundant poly(A) RNA-bind protein 2 (Nab2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0052        10      26      54 ..       6      34 ..       3      54 .. 0.88
   2 ?    6.2   0.1    0.0064        13      27      69 ..      62     104 ..      37     123 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0052
        Nab2 26 edvnyvaeyivlllsnGgtvesvvqelst 54
                 d+n v e i  l   G ++e++++e+ +
  CCE27609.1  6 ADINSVRELILTLTREGISQEEILEEVNA 34
                69************************875 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0064
        Nab2  27 dvnyvaeyivlllsnGgtvesvvqelstlfdsvskealadvvq 69 
                 d + v e i  ll +G +++++++e+ t + +  ++++  + +
  CCE27609.1  62 DPESVRELIQTLLQDGCHQDEILEEVNTQLVAQNQQSFDYLAK 104
                 567899********************99887777777766555 PP

>> DUF3496  Domain of unknown function (DUF3496)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1      0.04        80      53      77 ..      24      47 ..      12      57 .. 0.77
   2 ?    8.5   0.0    0.0013       2.5      47      76 ..      73     102 ..      64     107 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.04
     DUF3496 53 ktnerLaevstkllvekeqnrslls 77
                 ++e+L+ev+++l  + +++ sl +
  CCE27609.1 24 SQEEILEEVNAQLVAQDQRTISL-R 47
                6789*********8888766554.3 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0013
     DUF3496  47 LsnklnktnerLaevstkllvekeqnrsll 76 
                 L +   +++e+L+ev+t+l  + +q+   l
  CCE27609.1  73 LLQDGCHQDEILEEVNTQLVAQNQQSFDYL 102
                 44555599****************997655 PP

>> Raf1_HTH  Rubisco accumulation factor 1 helix turn helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0093        19      22      49 ..      14      41 ..      13      49 .. 0.86
   2 ?    7.7   0.8    0.0014       2.8      22      49 ..      69      96 ..      67      98 .. 0.95
   3 ?    1.1   0.0      0.16   3.2e+02      25      40 ..     212     227 ..     203     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0093
    Raf1_HTH 22 aiqqLqkaGyspqeIfEaTGiepvqQnq 49
                +i +L ++G+s++eI E+   + v Q q
  CCE27609.1 14 LILTLTREGISQEEILEEVNAQLVAQDQ 41
                6789*************99888888876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0014
    Raf1_HTH 22 aiqqLqkaGyspqeIfEaTGiepvqQnq 49
                +iq+L ++G+ ++eI E+   + v Qnq
  CCE27609.1 69 LIQTLLQDGCHQDEILEEVNTQLVAQNQ 96
                89*************************8 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.16
    Raf1_HTH  25 qLqkaGyspqeIfEaT 40 
                 qLq++Gy   e+ E T
  CCE27609.1 212 QLQRMGYLEAEVAECT 227
                 8*******99999977 PP

>> DUF433  Protein of unknown function (DUF433)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0023       4.5      22      40 ..      13      31 ..      10      37 .. 0.89
   2 ?    3.8   0.0     0.027        54      23      41 ..      69      87 ..      65      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0023
                HHHHHHHHTT--HHHHHHH CS
      DUF433 22 etilellaaGesieeiled 40
                e il l ++G s eeile+
  CCE27609.1 13 ELILTLTREGISQEEILEE 31
                568**************98 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.027
                HHHHHHHTT--HHHHHHHH CS
      DUF433 23 tilellaaGesieeiledy 41
                 i  ll++G   +eile+ 
  CCE27609.1 69 LIQTLLQDGCHQDEILEEV 87
                46789999********985 PP

>> Borrelia_orfA  Borrelia ORF-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.3e-05      0.19      25      57 ..      24      53 ..       9      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.3e-05
  Borrelia_orfA 25 sqsdIlylfnsnLkkngqkevkirTlqeDlkyL 57
                   sq +Il  +n  L  + q+++++rTlq   +yL
     CCE27609.1 24 SQEEILEEVNAQLVAQDQRTISLRTLQ---RYL 53
                   799************************...998 PP

>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2    0.0042       8.3      29      65 ..       4      40 ..       1      55 [. 0.79
   2 ?    3.1   0.0     0.066   1.3e+02      30      58 ..      60      93 ..      51     113 .. 0.71
   3 ?   -3.6   0.0         8   1.6e+04      21      38 ..     282     299 ..     272     300 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0042
                     -HHHHHHHHHHHHHHHSSSS-HHHHHHHHHHHTTTSC CS
  Acetyltransf_11 29 seeeikalkkayrllyrsglsleealeeleeeaeesp 65
                     ++++i+++++   +l r+g s ee lee+++++ +++
       CCE27609.1  4 KKADINSVRELILTLTREGISQEEILEEVNAQLVAQD 40
                     6889*************************65554443 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.066
                     HHHHHHHHHHHHHHHSSSS-HHHHHHHH.....H CS
  Acetyltransf_11 30 eeeikalkkayrllyrsglsleealeel.....e 58
                     +++ +++++  ++l ++g   +e lee+     +
       CCE27609.1 60 RTDPESVRELIQTLLQDGCHQDEILEEVntqlvA 93
                     5666789999******************544432 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 8
                      HHHHHTT--HHHHHHHHH CS
  Acetyltransf_11  21 vgLkRrgfseeeikalkk 38 
                      +gL+   +++e ++++++
       CCE27609.1 282 IGLRGDPITPEYLDQIRQ 299
                      688888888998888887 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.012        24       7      27 ..      12      32 ..      10      34 .. 0.87
   2 ?    4.5   0.1     0.016        32      29      42 ..      44      57 ..      42      66 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.012
      HTH_23  7 RlrillllaeGlsvreIAreL 27
                R +il l +eG+s++eI +e 
  CCE27609.1 12 RELILTLTREGISQEEILEEV 32
                6789*************8876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.016
      HTH_23 29 vsrrTvyrwlkryr 42
                +s rT++r+l+ + 
  CCE27609.1 44 ISLRTLQRYLQEWS 57
                899********995 PP

>> MyTH4  MyTH4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.6    0.0063        13       3      40 ..      14      51 ..      12      58 .. 0.78
   2 ?    7.7   0.4    0.0025         5       2      30 ..      68      96 ..      67     108 .. 0.91
   3 ?   -2.7   0.0       4.1   8.2e+03      59      59 ..     238     238 ..     220     254 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0063
                HHHHHHHHHHH-GGGHHHHHHHHHHCTTT-S-HHHHHH CS
       MyTH4  3 laqnilqkglskeeLrdEiycqlikQttenpnkesaer 40
                l+ ++ ++g+s+ee+ +E+ +ql+ Q +++ + + ++r
  CCE27609.1 14 LILTLTREGISQEEILEEVNAQLVAQDQRTISLRTLQR 51
                7888999*******************888764444444 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0025
                HHHHHHHHHHHH-GGGHHHHHHHHHHCTT CS
       MyTH4  2 elaqnilqkglskeeLrdEiycqlikQtt 30
                el+q++lq g +++e+ +E+  ql+ Q +
  CCE27609.1 68 ELIQTLLQDGCHQDEILEEVNTQLVAQNQ 96
                689**********************9976 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.1
                 H CS
       MyTH4  59 l 59 
                 +
  CCE27609.1 238 R 238
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2155.12
//
Query:       CCE27610.1  [L=321]
Description: related to L-serine dehydratase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-60  205.3   0.0    1.6e-60  205.0   0.0    1.1  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0   0.0   9.2e-65   1.6e-60      23     294 .]      12     297 ..       6     297 .. 0.92

  Alignments for each domain:
  == domain 1  score: 205.0 bits;  conditional E-value: 9.2e-65
                 EEEEEEGGGSTTSBTTHHHHHHHHHH..HHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EEEEECCHHHHHHHHHH CS
        PALP  23 plflKlEslnptgSfKdRgaeyllar..lkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaevvevggdydeavaaaa 119
                 +++lKl++l+p+gSfK Rg+ +l++r  ++++ g  +  ++s+GN+g+a+A  a +l  ++tiv+p ++s  ++ +l  lG ev+++g++  +a ++ +
  CCE27610.1  12 NIYLKLDNLQPSGSFKSRGIGNLMTRaaATRA-GPVHFYCSSGGNAGLACATSAVALQRPATIVIPLTTSDMMKNKLLDLGVEVHQIGKNLAAADEYLR 109
                 69************************655555.9999999999******************************************************77 PP

                 .HHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHH...HSTT-EEEEEEECTTCGGTTCCS..S.SS..B.S CS
        PALP 120 .elaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglke...rrpdvrvigvepegsdalarslragrrvtvpvsd 214
                  el+a++++ ++v++fd+p+v++g +ti +E+  q+++ +d +v++vGgGgl+ G+++g+ +   ++ +++v+gve+ g+d+l++slra+ + t+p+ +
  CCE27610.1 110 tELLAKDPHGVYVPPFDHPDVWDGASTIIPELRGQMDEPIDGIVCSVGGGGLFNGLMQGIESypwSGRTPHVVGVETLGADSLNASLRANAHITLPEIT 208
                 7888888*******************************************************8887777****************************** PP

                 SS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH..........HHHHHHCCTTCEEEEEEE-B CS
        PALP 215 tiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal..........klreagelkegdrvvviltg 294
                 +ia++l+++++s++++++++  +     vsd++a+  ++++a +++++ve s++aala +          + ++++e ++ +++v+i++g
  CCE27610.1 209 SIATSLGCSRVSAETWKWCRYPNAHSLVVSDADAAISCVRFADDARHLVEVSCGAALATVyrgdlrdclgRGLSDAEWAQ-KNIVIIVCG 297
                 ************************************************************98855433333334444444.488888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2493.66
//
Query:       CCE27611.1  [L=155]
Description: related to Carboxymuconolactone decarboxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-16   59.1   0.0    5.1e-16   58.5   0.0    1.2  1  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   2.9e-20   5.1e-16       5      84 ..      44     123 ..      42     124 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 2.9e-20
                 HHHHHHHHHHCC.GSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
         CMD   5 raltalrealla.reggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaae 84 
                 +++t+  ++ ++ r+g Ld+k+r+L+++++ + ++   ++  H+r+A+++G+te e++e+l q  +y+g pa + A+++ae
  CCE27611.1  44 QLITEWVWGNIWsRPG-LDRKQRSLLNIGIMVGLKSWPELGIHIRGAIRNGLTELELREALLQSTVYCGAPAGLEAFQVAE 123
                 6788999*****9988.*********************99***************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1225.93
//
Query:       CCE27612.1  [L=467]
Description: uncharacterized protein CPUR_01086 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0049   15.8   2.3     0.0071   15.2   2.3    1.2  1  VSP              Giardia variant-specific surface protein
  ------ inclusion threshold ------
      0.023   15.1   0.9      0.049   14.1   0.9    1.5  1  MGC-24           Multi-glycosylated core protein 24 (MGC-24),
       0.07   13.1   0.1       0.13   12.2   0.1    1.3  1  Syndecan         Syndecan domain
      0.092   12.7   0.4        0.2   11.7   0.4    1.5  1  DAP10            DAP10 membrane protein
       0.15   12.1   0.6       0.36   10.8   0.6    1.7  1  Gram_pos_anchor  LPXTG cell wall anchor motif
       0.16   11.0   9.2       0.29   10.1   9.2    1.5  1  DEC-1_N          DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> VSP  Giardia variant-specific surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.3   2.4e-06    0.0071     338     388 ..     263     322 ..     221     325 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.4e-06
         VSP 338 cappssdkGsvlcylikds.....g.stnksGlstGaiaGisv...avvvvvgGlvGflc 388
                  a p+s++ s    +   s     g +t  s lstG+iaGi++   av+++  G+v f+c
  CCE27612.1 263 AASPASSSSSSSSSIGSSSwtgqsGsATSSSTLSTGTIAGIAIgsaAVLLLAVGMVLFFC 322
                 3444444333333333332333346378999**********8754356666779999998 PP

>> MGC-24  Multi-glycosylated core protein 24 (MGC-24), sialomucin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.9   1.6e-05     0.049      39     133 ..     234     329 ..     216     333 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
      MGC-24  39 tvedCsvvnvtelcsaaskstpkptnstaktttkpsstttstsvatsgttnttvtptsqparkstFDaAsFiG.GivLvLgvqAviFFlykfcksK 133
                  +++C v+  + +c a ++ + +  +s a ++ ++ss+++s+s  +s+ t ++ + ts ++ +++  a   iG   vL+L+v  v+FF  +  k  
  CCE27612.1 234 LAKECPVAVPSPNCLAYTNVKQRGLDSLAAASPASSSSSSSSSIGSSSWTGQSGSATSSSTLSTGTIAGIAIGsAAVLLLAVGMVLFFCRRNKKKA 329
                 4589****************99999999999988888888887777766666666666666555555666677257************98766655 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.2e-05      0.13       6      37 ..     297     328 ..     294     332 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.2e-05
    Syndecan   6 pevlaaviggvvvgllfaillvlflvYRmrKK 37 
                 ++ +a++  g  + ll+a+ +vlf   R +KK
  CCE27612.1 297 TGTIAGIAIGSAAVLLLAVGMVLFFCRRNKKK 328
                 6789***************************9 PP

>> DAP10  DAP10 membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   6.6e-05       0.2      21      63 ..     285     328 ..     277     335 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.6e-05
       DAP10  21 teGscsGcGplslpllaGlvaadavvsllivgvv.fvcarlrsr 63 
                 + Gs +   +ls   +aG+    a v ll vg+v f c r +++
  CCE27612.1 285 QSGSATSSSTLSTGTIAGIAIGSAAVLLLAVGMVlFFCRRNKKK 328
                 469999999**********9999999999998653889998775 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6   0.00012      0.36      11      43 .]     296     328 ..     296     328 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS
  Gram_pos_anchor  11 kTGengnifltaaGllallggllLlvkrRKkek 43 
                      +TG+ + i    a++l+l++g++L++ rR+k+k
       CCE27612.1 296 STGTIAGIAIGSAAVLLLAVGMVLFFCRRNKKK 328
                      699999999999************998888875 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   9.2   9.8e-05      0.29     116     149 ..     329     362 ..     237     381 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.8e-05
     DEC-1_N 116 a..apapalaaapppapapvpddpapapaapqaaaf 149
                 a  apa a aaap papap+   pap+p+ p++a f
  CCE27612.1 329 AdsAPAAAAAAAPAPAPAPAM-APAPVPS-PSPAGF 362
                 233777777777777777765.7899986.444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3569.27
//
Query:       CCE27613.1  [L=599]
Description: uncharacterized protein CPUR_01087 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-13   49.1   0.0    7.6e-13   48.1   0.0    1.6  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
  ------ inclusion threshold ------
      0.028   14.8   0.2       0.64   10.4   0.1    2.4  2  pPIWI_RE_Y     pPIWI_RE three-gene island domain Y


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   8.5e-17   7.6e-13       1      86 []     505     588 ..     505     588 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 8.5e-17
                    HHHHHHT------TT....--HHHHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHHHHHHHH CS
  Dimer_Tnp_hAT   1 eldkyleelpvlrrkeksefdvlewwkensskyPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallcieqwl 86 
                    el++y+     ++ +   + ++++ww +n++k+P++skla d+L+ip+ ++ + r+  +++ ++  +  ++ p+++e+  c+++wl
     CCE27613.1 505 ELEQYIRP-GEWQSEG-GFDNPIQWWMRNRGKFPTVSKLALDILAIPANTVDCARALEASKLTMASQCEEMAPDTLEKVECLRNWL 588
                    67888888.7777554.5569****************************************************************7 PP

>> pPIWI_RE_Y  pPIWI_RE three-gene island domain Y
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.039   3.5e+02      26      99 ..      39     116 ..      30     138 .. 0.61
   2 ?   10.4   0.1   7.1e-05      0.64      40      93 ..     218     273 ..     202     284 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.039
  pPIWI_RE_Y  26 paavqraldrlvLecLrrgaep.PsslpdllrWarerplgewpl.....dlpedeevad..evlldeedelptqlclElale 99 
                 pa++++  dr++++++ +++ p  + l++l     ++ l++  l     + p+d ++ +  + +l ++++ p+q  + l ++
  CCE27613.1  39 PATLRNIGDRTAMKAHLNETFPaKKALVKLQ---MQKTLTKIHLsydlsTSPDDNAILAvsAHFL-DDNGIPQQRLIALRQQ 116
                 89999999********999999888888887...4555555555332212333332221002223.3344666666666666 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 7.1e-05
  pPIWI_RE_Y  40 cLrrgaepPsslpdllrWarerplgewpl..dlpedeevadevlldeedelptqlc 93 
                 +L+r+++p+ +l+ l+ W r  p ++ ++  ++pe+  ++ ++ll + + l +ql+
  CCE27613.1 218 SLWRRRGPIGKLHNLVMWVRSSPQRKQLFnsTVPEAQDSGLDILLASVSTLEQQLV 273
                 79999***********************9755*************99998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4335.22
//
Query:       CCE27614.1  [L=340]
Description: uncharacterized protein CPUR_01088 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-20   71.1   0.0    1.4e-19   70.5   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    2.2e-11   44.3   0.0    5.8e-11   43.0   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    8.2e-10   39.2   0.0    2.1e-09   37.9   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    1.9e-07   31.7   0.0    1.4e-06   28.9   0.0    2.4  2  Methyltransf_12  Methyltransferase domain
    4.3e-05   23.3   0.0     0.0085   15.9   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
     0.0013   18.2   0.0     0.0025   17.3   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0015   17.9   0.0       0.27   10.5   0.0    2.2  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0016   18.0   0.0     0.0033   17.0   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0029   16.9   0.0       0.02   14.2   0.0    1.9  2  Methyltransf_2   O-methyltransferase domain
     0.0049   17.0   0.0       0.24   11.5   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.023   14.4   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.018   14.8   0.0      0.031   14.1   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
      0.018   14.5   0.0      0.046   13.2   0.0    1.6  2  Methyltransf_4   Putative methyltransferase
      0.095   12.4   0.0       0.17   11.6   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.12   11.7   0.0       0.19   11.1   0.0    1.2  1  GidB             rRNA small subunit methyltransferase G


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   1.2e-22   1.4e-19      16     124 ..      99     209 ..      76     256 .. 0.76

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 1.2e-22
  Methyltransf_23  16 llpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrq 104
                      l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   e++ ++++fd+I++r+  + ++d+ +ll+ 
       CCE27614.1  99 LAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWVPpNLCFEIDDAT--LEWTWNANHFDFIHMRYIVGGIQDWSALLKE 189
                      333.4444456*******************87779************98542222223322..46667************************** PP

  Methyltransf_23 105 iatllkpgGylllseplasl 124
                      ++++++pgG+++  e+  + 
       CCE27614.1 190 AYRCCAPGGWVESVEYEPEF 209
                      **************987665 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   4.8e-14   5.8e-11       1      97 []     110     198 ..     110     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 4.8e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  ++++fD++++++ +     +d+ ++lke++r++
       CCE27614.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPP-------NLCFEIDDAtLEWTWNANHFDFIHMRYIVGG--IQDWSALLKEAYRCC 194
                      9******************99**********99887655.......558999999778999**********866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE27614.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   1.8e-12   2.1e-09       1      94 [.     111     200 ..     111     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1.8e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  +         f   da+ +   + n fD++ ++  +  ++d++++lke++R++ pg
       CCE27614.1 111 LDVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWVPPNL-------CFEIDDATlEWTWNANHFDFIHMRYIVGGIQDWSALLKEAYRCCAPG 197
                      8**************9999**************9983333.......3333444423589********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE27614.1 198 GWV 200
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       5.9     7e+03      39      61 ..      57      79 ..      22      97 .. 0.60
   2 !   28.9   0.0   1.2e-09   1.4e-06       1      99 []     111     200 ..     111     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.9
  Methyltransf_12 39 klakrennnnnnvelealdlldl 61
                     + + ++ ++++ + +  +d+ +l
       CCE27614.1 57 HGRTYHSDKFTANYFIPNDDQQL 79
                     33444444555555555555444 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 1.2e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     l +++++ + +++++a+         +fD +++   +  ++d+ ++l++++++++
       CCE27614.1 111 LDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPPNLCFEIDDATLEWTWNAN---------HFDFIHMRYIVGGIQDWSALLKEAYRCCA 195
                      8********************************66666666666666666666554.........7**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE27614.1 196 PGGWV 200
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.1e-06    0.0085       5      38 ..     108     140 ..     104     142 .. 0.90
   2 ?    5.1   0.0     0.015        17      55     107 ..     149     200 ..     146     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.1e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a v+G D s+
       CCE27614.1 108 HRVLDVGTGSGIWAIEFA-DQFPNASVIGTDLSP 140
                      68****************.669*********987 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.015
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      n+ Fe+ d++      ++ + fD+i+ + ++  + d  + l+e+ r   pgg +
       CCE27614.1 149 NLCFEIDDATLeWT--WNANHFDFIHMRYIVGGIQDWSALLKEAYRCCAPGGWV 200
                      56678888877333..999******************************99965 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.1e-06    0.0025     162     194 ..     107     140 ..      90     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.1e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a ++  ++v+++D+ +
  CCE27614.1 107 IHRVLDVGTGSGIWAIEfADQFPNASVIGTDLSP 140
                 369*************7477999********987 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.011        13      49      81 ..     108     139 ..      95     144 .. 0.80
   2 !   10.5   0.0   0.00023      0.27     112     154 ..     163     205 ..     151     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.011
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++vlDv +G+g +a++++d+  +   v++ D++
       CCE27614.1 108 HRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLS 139
                      589***************99754.456666665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00023
                      TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 112 feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       + + fD++ + + +  + D +  Lkeayr   pGG +  +e+
       CCE27614.1 163 WNANHFDFIHMRYIVGGIQDWSALLKEAYRCCAPGGWVESVEY 205
                      56689********************************999986 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.8e-06    0.0033      21      63 ..      96     138 ..      93     141 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.8e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v  +d 
  CCE27614.1  96 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDL 138
                 789999****9999**********************9998886 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.7e-05      0.02      17      95 ..      53     139 ..      43     148 .. 0.67
   2 ?    0.2   0.0      0.31   3.7e+02     146     167 ..     184     205 ..     168     235 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.7e-05
                     HHHHHS--....HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGis....lfeaikrdeeerakf..nkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +++++G++     f+a++  ++ +++    ++ ++  ++  ++ l        ++++++DvG G+G  a + + ++P+ +vi  Dl+
      CCE27614.1  53 YRQIHGRTyhsdKFTANYFIPNDDQQLesEELCHHFLTILLNDQLFLAPleKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 139
                     3444444433337777776555555441134445555666666555544115689**************************999985 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.31
                     HHHHHHHHHH--TT-EEEEEE- CS
  Methyltransf_2 146 vklLkrvkkalpagGkvivvea 167
                     + lLk+ ++ + +gG v  ve 
      CCE27614.1 184 SALLKEAYRCCAPGGWVESVEY 205
                     679************9977775 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0    0.0002      0.24      21      70 ..     106     157 ..      77     171 .. 0.81
   2 ?    3.2   0.0     0.069        83      29      39 ..     193     203 ..     191     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p++ +   d 
  CCE27614.1 106 KIHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNLCFEIDDA 157
                 6799***********9999999875.9**********9877766666655555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.069
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE27614.1 193 CCAPGGWVESV 203
                 9******9865 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.9e-05     0.023      40      82 ..     100     142 ..      80     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
  Methyltransf_16  40 lganelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                       + ++ +  +vl++G G+G+  + +a + p+a+vi tDl+  +
       CCE27614.1 100 APLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQ 142
                      4556777889****************************98765 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.6e-05     0.031      24      59 ..     105     140 ..      96     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE27614.1 105 DKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSP 140
                 44569**********************999999765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.8e-05     0.046       5      33 ..     110     138 ..     106     142 .. 0.92
   2 ?   -3.1   0.0       3.8   4.6e+03      83      99 ..     269     287 ..     268     292 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE27614.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDL 138
                     89************************876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.8
                     ---SGGG..GGGSTTSHHH CS
  Methyltransf_4  83 PwfKkrh..hKrRllqpel 99 
                     Pw K r+  +  R++ ++l
      CCE27614.1 269 PWAKDRKfaQVGRIFREAL 287
                     9*99999333446666665 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014      0.17      69     103 ..     102     135 ..      80     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 le +k  rvL+vG+GsG+ +  +a  + +   v++
  CCE27614.1 102 LEKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VIG 135
                 5667889************999988776555.665 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00016      0.19      17      67 ..      75     125 ..      65     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
                 HHS---S--SHHHHHHHCHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHH CS
        GidB  17 kkinLtsikepeellerhlldslsvlellkekrdkviDvGsGaGlPGipLa 67 
                     L s +  + +l+  l d l +++l k+k ++v+DvG+G G+ +i  a
  CCE27614.1  75 DDQQLESEELCHHFLTILLNDQLFLAPLEKDKIHRVLDVGTGSGIWAIEFA 125
                 55666666677778888889999999999999889*********9888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2609.43
//
Query:       CCE27615.1  [L=2276]
Description: related to ECM32-DNA dependent ATPase/DNA helicase B [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-39  134.0   0.1    1.5e-38  132.4   0.0    2.0  1  AAA_12           AAA domain
      3e-34  118.3   0.0    3.5e-12   46.9   0.0    4.8  4  AAA              ATPase family associated with various cellul
    1.2e-29  104.0  24.7    4.1e-27   95.6   0.0    5.5  5  AAA_11           AAA domain
    9.4e-19   67.9   0.0    2.8e-06   27.2   0.0    5.1  4  AAA_30           AAA domain
    8.9e-16   57.8   6.7    7.9e-07   29.2   0.6    3.9  3  AAA_lid_6        AAA lid domain
    3.8e-14   53.3   0.0    2.1e-08   34.6   0.0    4.6  3  AAA_19           AAA domain
    7.8e-09   35.9   6.6       0.27   11.5   0.5    7.1  5  AAA_22           AAA domain
      1e-07   32.0   0.4       0.43   10.6   0.0    4.3  4  AAA_5            AAA domain (dynein-related subfamily)
    4.5e-07   29.5   0.1        1.1    8.6   0.0    3.7  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
    5.8e-06   26.2   0.1       0.28   10.9   0.0    3.8  3  IstB_IS21        IstB-like ATP binding protein
    7.3e-06   26.2   0.6       0.76    9.9   0.1    4.7  3  AAA_33           AAA domain
    1.1e-05   25.8   0.0        2.2    8.7   0.0    4.3  3  RNA_helicase     RNA helicase
      3e-05   24.5   3.0          3    8.2   0.0    5.0  3  AAA_16           AAA ATPase domain
    7.3e-05   22.9   0.0       0.44   10.7   0.0    3.7  3  Torsin           Torsin
     0.0001   22.1   0.4        2.7    7.6   0.0    3.9  3  AAA_24           AAA domain
    0.00017   21.7   0.2      0.018   15.1   0.0    3.9  4  ResIII           Type III restriction enzyme, res subunit
    0.00022   20.8   0.3       0.19   11.2   0.0    3.2  3  PhoH             PhoH-like protein
    0.00032   20.3   0.4        1.5    8.3   0.0    3.4  3  AAA_7            P-loop containing dynein motor region
     0.0023   17.8   0.8      0.079   12.8   0.0    3.6  2  Helicase_RecD    Helicase
     0.0026   17.5   0.3         14    5.3   0.1    4.7  4  Sigma54_activat  Sigma-54 interaction domain
      0.003   16.9   0.0      0.003   16.9   0.0    6.3  7  DUF2075          Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
      0.013   15.7   1.0         16    5.7   0.0    4.1  3  AAA_28           AAA domain
      0.023   14.4   0.2        8.8    6.1   0.0    3.6  4  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.046   13.5   0.2         20    5.0   0.0    3.4  3  AAA_29           P-loop containing region of AAA domain
      0.049   13.5   0.1         22    4.9   0.0    3.3  3  RsgA_GTPase      RsgA GTPase
      0.066   13.0   0.0        1.4    8.7   0.0    3.3  3  DEAD             DEAD/DEAH box helicase
      0.075   12.6   0.1         21    4.6   0.0    3.6  3  AAA_25           AAA domain
       0.16   11.4   0.0       0.16   11.4   0.0    4.2  4  UvrD-helicase    UvrD/REP helicase N-terminal domain
       0.46    9.4   4.6         11    4.9   0.0    3.9  4  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
        3.7    8.1   8.5         38    4.8   0.4    5.1  4  ABC_tran         ABC transporter


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.0   2.6e-41   1.5e-38       1     198 [.     821    1040 ..     821    1041 .. 0.87

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 2.6e-41
      AAA_12    1 lerSlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidv...........ekseeekekkeksy 86  
                  l+rSlferl+ +e ++ ++L+ q+Rm+p+Is++++ l+Y + L d++++ + +++        +++++f++            +  + e+ + + s+
  CCE27615.1  821 LNRSLFERLILNE-YPHTVLRNQHRMDPSISQLVRILTYPDLLDDSKTLDRPQTR------GLTSKVIFVNHdhpedpvdgrlK--DREEGEANPSK 908 
                  589**********.********************************999998888......77778888888667776665422..222222339** PP

      AAA_12   87 iNeeEaelvvklvekllkkgseeerkkigvitpYraqvellkkklkekeeekseke........................ievntvdgfQGrekdvi 159 
                   Ne Ea++v+++v++l ++g+++  ++  v+tpY  q++ll++ l+++++     +                        i+ +t+d++QG+e +++
  CCE27615.1  909 QNEFEARMVLQTVKYLGQQGYKT--NDMVVLTPYLGQLRLLRDILARENDPVL--SdldsnelvraglltdaaakvgkrpIRLSTIDNYQGEESKIV 1001
                  ***********************..9********************7544432..2256777888888888888889999***************** PP

      AAA_12  160 ilslVRsnekkeigflkderrlNValTRAkskliivGnk 198 
                  i sl Rsn +++igf+k   rlNV l+RA+++li+ Gn 
  CCE27615.1 1002 IASLTRSNGNGDIGFMKAPERLNVLLSRARNCLIMYGNM 1040
                  *************************************96 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.026        16       3      22 ..     501     520 ..     499     550 .. 0.72
   2 !   27.6   0.0   5.4e-09   3.2e-06      10     127 ..    1315    1431 ..    1313    1436 .. 0.79
   3 !   31.7   0.0   2.9e-10   1.7e-07       3      99 ..    1588    1683 ..    1586    1711 .. 0.80
   4 !   46.9   0.0   5.8e-15   3.5e-12       2     114 ..    1857    1964 ..    1856    1986 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.026
                 EESSTTSSHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel 22 
                 + GppGtGK+ +    +k l
  CCE27615.1 501 IQGPPGTGKSFIGALAVKAL 520
                 67********9987777765 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 5.4e-09
                  SHHHHHHHHHHHH.......THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   10 GKTllakavakel.......gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99  
                  GKT++a+  ak l       g +f e+ gs+l ++ v+  +k i +++++        ++fiDE+++l + +       ++ v++ Ll+e+++++  
  CCE27615.1 1315 GKTTMARLYAKLLtsvgilaGNRFEETTGSKLANMGVSGCQKLIDGMLEA---G--GGVVFIDEAYQLSSGN----AMGGRAVLDFLLAEVENLTG- 1401
                  9***********75555555799*************************65...3..49**********7666....8999****************. PP

                  SSTEEEEEEESS..GGGSTHHHH.S.TTSSEE CS
         AAA  100 eskvivigatnr..pdkldpall.r.gRfdrk 127 
                    k+++i+a++   ++++ +      +Rf  +
  CCE27615.1 1402 --KICFILAGYAkqMESFFSHNPgFpSRFPLE 1431
                  ..577777665533666655555445666555 PP

  == domain 3  score: 31.7 bits;  conditional E-value: 2.9e-10
                  EESSTTSSHHHHHHHHHHHH.......THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHH CS
         AAA    3 lyGppGtGKTllakavakel.......gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlte 92  
                  ++G+pGtGKT++ak   + l       + e++  + s+++   +g+se+++++++++  +    ++l+iDE++ l++ +    +  ++ vv+++++ 
  CCE27615.1 1588 FVGNPGTGKTTVAKLYGQILvdlgllsNGEVIVKNPSDFVGGALGQSEQQTKGILAAT-A---GKVLVIDEAYGLCSPS----DPYKSAVVDTIVST 1676
                  89*****************76666666799*************************653.3...37***********999....66666666666666 PP

                  HHHTTTS CS
         AAA   93 ldgvkkk 99  
                  +     +
  CCE27615.1 1677 VHSTPGD 1683
                  6555555 PP

  == domain 4  score: 46.9 bits;  conditional E-value: 5.8e-15
                  EEESSTTSSHHHHHHHHHHHH.......THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHH CS
         AAA    2 llyGppGtGKTllakavakel.......gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlt 91  
                  l+ GppGtGK+++a+ + k +       + ++l  s+s+l+ +yvg++  k+r+++++a       +l++DE+++l + +       +++++++L+ 
  CCE27615.1 1857 LFRGPPGTGKSTTARKMGKVFydmgflsSCQVLDCSASDLIGSYVGQTGPKVRQVLDKA--LG--QVLLVDEAYRLSEGS------YAKEALDELVD 1943
                  899****************964444444699*************************987..33..8**********8877......99********* PP

                  HHHHTTTSSSTEEEEEEESSGGG CS
         AAA   92 eldgvkkkeskvivigatnrpdk 114 
                  ++ + k + +++i+i+a++ + +
  CCE27615.1 1944 AITKPKYH-KRLIIILAGYVE-D 1964
                  *******7.448888887542.2 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.0   6.8e-30   4.1e-27       2     259 ..     482     807 ..     481     809 .. 0.83
   2 ?    0.2   9.3      0.87   5.2e+02      82     165 ..    1168    1221 ..    1101    1289 .. 0.45
   3 ?    4.0   0.0     0.062        37      19      43 ..    1585    1614 ..    1562    1683 .. 0.65
   4 !    9.3   0.0    0.0015      0.88      19      42 ..    1855    1878 ..    1837    1911 .. 0.76
   5 ?   -1.3   3.8       2.6   1.5e+03     122     170 ..    2186    2232 ..    2078    2245 .. 0.50

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 6.8e-30
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpki.vRvgneeer 99 
                 l++ qr+a+ +al +   ++iqGPPGtgK++  +  +++l        +++++ riLv + +N A D+ l+ l++         ++pki  R+g++   
  CCE27615.1 482 LDAAQRDALVNALGSAV-SVIQGPPGTGKSFIGALAVKAL-------LSNNESSRILVLSYTNHALDQFLKDLIK-------IGIDPKImTRLGSKV-- 563
                 8999**********995.************8877777777.......25899***********************.......888888626888877.. PP

      AAA_11 100 iseavksvsleekvekrlekee......kaqlakeiskeleklakelrafeeeeek........................................... 149
                  s++v s+sle++++++   ++      +     ++++e  kl++ ++++ +  e+                                           
  CCE27615.1 564 -SDSVASLSLETQFRASHIRQTngicarR----YKVTEEMTKLRERIDSSFKAWERlptledvidhlefsdeegatlchsafklpflngytvnpvrgkr 657
                 .9*************99988764433332....233444444444444444444447778999999********************************* PP

      AAA_11 150 ........................................eklkkskekskskleqerrklkkerkelskeleeaeesleeevldeaeivltTlsgags 208
                                                           lk   +  +++++ ++    ke++ l+ e+++  ++++  ++++++++ +T + a++
  CCE27615.1 658 nlppdflirrwvdgkapggigrrissecapiwsmsrsqrsSMLKSWTKSIREERRDSLVSNVKEINALQVEIDRLFDEARCAFIRTKQVIGCTTTAAAK 756
                 **********************************9997654455555555666666666677888889999999999999**********999999876 PP

      AAA_11 209 k.lleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpatvi 259
                    + k+a + d+vi+ EA+  +E+ +l +l+  +k+++L+GD+kQL++ ++
  CCE27615.1 757 YpGIIKAA-NADCVIVEEAGEILEAHILAALSPDVKQLILIGDHKQLRPKCK 807
                 51455554.***************************************9766 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.87
      AAA_11   82 egekykpkivRvgneeeriseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeek......eklkkskekskskleq 165 
                   +++ +++++Rv +++ +                      +++  k+i++el ++++ l++++e++e+      +             + 
  CCE27615.1 1168 AKRDLEMEMARVSRQK-E----------------------YQRELKTIQDELSRQRRLLKDEQEKAEEkkilqqH-------------RL 1221
                  2233333444444443.2......................33333333333333333333333222222222221.............11 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.062
      AAA_11   19 itliqGPPGtgKTktivellsqll......s 43  
                   +++ G PGtgKT+ +++l+ q+l      s
  CCE27615.1 1585 NRVFVGNPGTGKTT-VAKLYGQILvdlgllS 1614
                  677889******96.5566666654555550 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0015
      AAA_11   19 itliqGPPGtgKTktivellsqll 42  
                   +l+ GPPGtgK++t  ++ ++ +
  CCE27615.1 1855 TFLFRGPPGTGKSTTARKMGKVFY 1878
                  5799************99988884 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 2.6
      AAA_11  122 kaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrkl 170 
                  +++   e ++ +e ++k+lra++  +  e+l+    k+  ++e++r+k 
  CCE27615.1 2186 EQDAEAEARRDQEHEKKKLRARDTAD--EALRARIIKELMEEEERRKKE 2232
                  22222222222222222222222222..222222222222222222222 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   4.8e-09   2.8e-06       2      64 ..     482     545 ..     481     599 .. 0.81
   2 !    9.6   0.0    0.0011      0.68      82     130 ..     759     804 ..     717     851 .. 0.80
   3 !   15.0   0.0   2.6e-05     0.015       6      97 ..    1571    1655 ..    1567    1739 .. 0.82
   4 !    9.2   0.0    0.0015      0.91      22     100 ..    1857    1928 ..    1853    1957 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 4.8e-09
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa..ggrviglAptgkaAkv.Lae 64 
                 l+a Q++a+ ++l+s   v+v++Gp+GtGK+++ + +++a+ ++    r+++l+ t+ a ++ L++
  CCE27615.1 482 LDAAQRDALVNALGSA--VSVIQGPPGTGKSFIGALAVKALLSNneSSRILVLSYTNHALDQfLKD 545
                 899***********99..9**************999976665552459*********999885554 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0011
      AAA_30  82 grarlepgtllivDEagmv.dtkqlaallkaaekagakvilvGDerQlas 130
                 g  + ++++++iv Eag +  ++ laal         ++il+GD++Ql +
  CCE27615.1 759 GIIKAANADCVIVEEAGEIlEAHILAALSPD----VKQLILIGDHKQLRP 804
                 44566788*********87344444444444....556*********975 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 2.6e-05
      AAA_30    6 QaaavealltsgdrvavltGpAGtGKttalkalreaweaag....grviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEa 97  
                  Q+++ e+ + + ++  v +G +GtGKtt+ k + +++ + g    g+vi+  p+  +  +L+++ +     ++ +l +++       g++l++DEa
  CCE27615.1 1571 QRELQEESIIEYNLNRVFVGNPGTGKTTVAKLYGQILVDLGllsnGEVIVKNPSDFVGGALGQSEQ----QTKGILAATA-------GKVLVIDEA 1655
                  8888888888889999**********************9999999999999999999888886633....3344443333.......478888887 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0015
      AAA_30   22 vltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmv 100 
                  +  Gp+GtGK+t+ +++ +++ + g+          a++ ++  +g ++  + ++l++  g       ++l+vDEa  +
  CCE27615.1 1857 LFRGPPGTGKSTTARKMGKVFYDMGFLSSCQVLDCSASDLIGSYVGQTGPKVRQVLDKALG-------QVLLVDEAYRL 1928
                  568**************99999999777777778888888999999999999999944444.......99999998666 PP

>> AAA_lid_6  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.9   2.1e-09   1.2e-06       9      62 .]    1474    1528 ..    1469    1528 .. 0.90
   2 !   29.2   0.6   1.3e-09   7.9e-07       4      61 ..    1747    1799 ..    1744    1808 .. 0.83
   3 ?   -0.7   0.0       2.8   1.6e+03       3      33 ..    2028    2058 ..    2026    2061 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 2.1e-09
   AAA_lid_6    9 ellerrrrdenfGNARfVRnllekairrqadRlatt.ddseltredlmtLtaeDi 62  
                   +l r+r +e fGNAR V+n l  ++rrq +Rl ++  ++++t+ d   Lt+ D+
  CCE27615.1 1474 RRLGRARGREGFGNARAVENTLATICRRQGQRLRSErRKDKATKPDDFLLTKKDL 1528
                  567799*****************************99899999999999999996 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 1.3e-09
   AAA_lid_6    4 eevlrellerrrrdenfGNARfVRnllekairrqadRlattddseltredlmtLtaeD 61  
                  ++v+ ++++r+r+ +nfGNA++++ ll +a+rr++ Rl++ + +++     + L+a D
  CCE27615.1 1747 KQVALDMVNRARNHPNFGNAGEIDILLNEAKRRHQIRLSAGETKRV-----SMLEAVD 1799
                  678999**********************************533333.....3455555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.8
   AAA_lid_6    3 AeevlrellerrrrdenfGNARfVRnlleka 33  
                   +++++e+++  +++     AR+V++l e++
  CCE27615.1 2028 FQREIYEHFDTLSKQSGWASARDVETLAEAM 2058
                  578899999999999999*********9986 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   3.5e-11   2.1e-08       1     142 [.     486     803 ..     486     807 .. 0.87
   2 ?    7.2   0.0      0.01       6.1      14      42 ..    1587    1615 ..    1575    1701 .. 0.85
   3 ?    5.3   0.0     0.039        23      14      45 ..    1857    1888 ..    1852    1895 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 3.5e-11
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal..................... 77 
                 qr+a+  al + v ++ ++pGtGK+ +   +v+ l+++++    +il++++t++A ++  + l ++g + + + rl+                      
  CCE27615.1 486 QRDALVnALGSAVSVIQGPPGTGKSFIGALAVKALLSNNES--SRILVLSYTNHALDQFLKDLIKIGIDPKIMTRLGSkvsdsvaslsletqfrashir 582
                 77888559*******************************76..8**************99999999999666667766678888888889999999999 PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  CCE27615.1 583 qtngicarrykvteemtklreridssfkawerlptledvidhlefsdeegatlchsafklpflngytvnpvrgkrnlppdflirrwvdgkapggigrri 681
                 999************************************************************************************************ PP

      AAA_19  78 ...........................................................ldfddlltealelle..............eaeeekklqee 103
                                                                            +             +              +    k   ++
  CCE27615.1 682 ssecapiwsmsrsqrssmlkswtksireerrdslvsnvkeinalqveidrlfdearcafI-------------RtkqvigctttaaakYPGIIK-AANA 766
                 *************************************99999999666665555555551.............344455555544332222222.3366 PP

      AAA_19 104 ellivDEfqdvdelqyrLlkallgekkklllvGDpdQli 142
                 +++iv E+ ++  l+ ++l al ++ k+l+l+GD++Ql 
  CCE27615.1 767 DCVIVEEAGEI--LEAHILAALSPDVKQLILIGDHKQLR 803
                 7*******998..7789******888***********96 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.01
      AAA_19   14 lvtaGpGtGKTrvlkhivallvelggvkp 42  
                  + ++ pGtGKT+v k   ++lv+lg ++ 
  CCE27615.1 1587 VFVGNPGTGKTTVAKLYGQILVDLGLLSN 1615
                  55799********9999999988876655 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.039
      AAA_19   14 lvtaGpGtGKTrvlkhivallvelggvkpeei 45  
                  l  ++pGtGK+++ +++ +++ ++g ++  ++
  CCE27615.1 1857 LFRGPPGTGKSTTARKMGKVFYDMGFLSSCQV 1888
                  56799***********9999999887765555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.035        21       8      31 ..     499     522 ..     495     621 .. 0.79
   2 ?    3.2   0.0      0.16        98      48     129 ..    1314    1409 ..    1281    1416 .. 0.63
   3 !    9.3   0.0    0.0022       1.3       9      28 ..    1587    1606 ..    1581    1627 .. 0.88
   4 ?   -1.9   0.0       6.2   3.7e+03      86     100 ..    1642    1655 ..    1631    1680 .. 0.80
   5 !   11.5   0.5   0.00045      0.27      12     129 ..    1860    1960 ..    1855    1969 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.035
      AAA_22   8 lvvtGesGtGKTtllrrlleqlde 31 
                  v+ G++GtGK++  +  ++ l  
  CCE27615.1 499 SVIQGPPGTGKSFIGALAVKALLS 522
                 5899********998887777743 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.16
      AAA_22   48 psstsskdllrellralglelka........erlsseell.ealeqalraravielliiDEaqhlrs......eealeeLrsllnlsrkgvqliLvG 129 
                  +++t+ + l+ +ll  +g  + +        + ++      ++l + + +++  +++ iDEa  l+s       ++l +L   +++ + ++ +iL+G
  CCE27615.1 1314 QGKTTMARLYAKLLTSVGILAGNrfeettgsKLANMGVSGcQKLIDGMLEAGG-GVVFIDEAYQLSSgnamggRAVLDFLLAEVENLTGKICFILAG 1409
                  44557777888888888876666775554432222222222344444444444.8999999999952556667777887754444477788888877 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0022
      AAA_22    9 vvtGesGtGKTtllrrlleq 28  
                  v +G +GtGKTt+++ + + 
  CCE27615.1 1587 VFVGNPGTGKTTVAKLYGQI 1606
                  679************99775 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 6.2
      AAA_22   86 lraravielliiDEa 100 
                  l a+a  ++l+iDEa
  CCE27615.1 1642 LAATAG-KVLVIDEA 1655
                  455566.8******9 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 0.00045
      AAA_22   12 GesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr..s. 105 
                  G++GtGK+t++r++ + +         + ++++ +   ++s +dl    + ++g               +++q l+++   ++l++DEa +l+  s 
  CCE27615.1 1860 GPPGTGKSTTARKMGKVFY--------DMGFLSSCQVLDCSASDLIGSYVGQTG--------------PKVRQVLDKALG-QVLLVDEAYRLSegSy 1933
                  9*************99993........666666666666699999999999999..............468889999999.9999999999965427 PP

      AAA_22  106 .eealeeLrsllnl..srkgvqliLvG 129 
                   +eal eL++       +k + +iL+G
  CCE27615.1 1934 aKEALDELVDAITKpkYHKRLIIILAG 1960
                  799999995443324666666666666 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0061       3.7       3      27 ..     500     526 ..     499     539 .. 0.75
   2 ?   -2.6   0.0       8.5   5.1e+03      11      24 ..    1315    1328 ..    1314    1344 .. 0.83
   3 !    8.7   0.0    0.0027       1.6       3      24 ..    1587    1611 ..    1585    1656 .. 0.62
   4 !   10.6   0.0   0.00072      0.43       2      77 ..    1856    1928 ..    1855    1950 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0061
                 EEE--SSSSHHHHHHHGGGGB..S--E CS
       AAA_5   3 lLvGppGtgKselaerlaaal..nrev 27 
                 +++GppGtgKs++     +al  n+e 
  CCE27615.1 500 VIQGPPGTGKSFIGALAVKALlsNNES 526
                 689**********99998888784444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.5
                  SHHHHHHHGGGGBS CS
       AAA_5   11 gKselaerlaaaln 24  
                  gK+++a+ +a++l+
  CCE27615.1 1315 GKTTMARLYAKLLT 1328
                  9**********995 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0027
                  EEE--SSSSHHHHHHHGGGGB...S CS
       AAA_5    3 lLvGppGtgKselaerlaaal...n 24  
                  + vG+pGtgK+++a+ + + l   +
  CCE27615.1 1587 VFVGNPGTGKTTVAKLYGQILvdlG 1611
                  579************9988885541 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00072
                  EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG- CS
       AAA_5    2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEvera 77  
                  +l  GppGtgKs+ a+++ +++    ++      d +++dl+g++   ++t   v ++l +a   g++l++DE  r+
  CCE27615.1 1856 FLFRGPPGTGKSTTARKMGKVFyDMGFLSSCQVLDCSASDLIGSYV--GQTGPKVRQVLDKA--LGQVLLVDEAYRL 1928
                  5778****************99544444444456899999999998..45555555555544..4777777776665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0018       1.1      11      55 ..     485     530 ..     481     545 .. 0.80
   2 !    7.6   0.0    0.0037       2.2      26      49 ..    1587    1610 ..    1579    1624 .. 0.87
   3 !    8.3   0.0    0.0023       1.4      25      49 ..    1856    1880 ..    1853    1902 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0018
  Mg_chelatase  11 akraleiaaaGgHnlllvGppGsGKtml.akrlpsllpplseeeal 55 
                   a+r   + a G+   ++ GppG+GK+ + a ++++ll++ +++ +l
    CCE27615.1 485 AQRDALVNALGSAVSVIQGPPGTGKSFIgALAVKALLSNNESSRIL 530
                   677778999999999***********99566788888887766655 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0037
  Mg_chelatase   26 llvGppGsGKtmlakrlpsllppl 49  
                    ++vG+pG+GKt +ak   ++l +l
    CCE27615.1 1587 VFVGNPGTGKTTVAKLYGQILVDL 1610
                    79**************99999887 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0023
  Mg_chelatase   25 lllvGppGsGKtmlakrlpsllppl 49  
                    +l+ GppG+GK+  a+++ +++ ++
    CCE27615.1 1856 FLFRGPPGTGKSTTARKMGKVFYDM 1880
                    799**************99988766 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.014       8.1      51      73 ..     500     521 ..     489     544 .. 0.83
   2 !   10.9   0.0   0.00046      0.28      32      74 ..    1567    1610 ..    1536    1658 .. 0.82
   3 ?    4.1   0.0     0.055        33      50      89 ..    1856    1899 ..    1852    1961 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.014
   IstB_IS21  51 vllGpsGvGKshlaialgveavr 73 
                 v+ Gp+G+GKs++  al+v+a  
  CCE27615.1 500 VIQGPPGTGKSFIG-ALAVKALL 521
                 899********996.78887764 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00046
   IstB_IS21   32 krkvk.eLatlsfiekkenivllGpsGvGKshlaialgveavra 74  
                  +++ + eL++ s ie + n v++G +G+GK+ +a   g+  v  
  CCE27615.1 1567 QTNYQrELQEESIIEYNLNRVFVGNPGTGKTTVAKLYGQILVDL 1610
                  333334999************************99888877665 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.055
   IstB_IS21   50 ivllGpsGvGKshlaialgveavragl....svlfvrvedLvee 89  
                  +++ Gp+G+GKs  a  +g+     g+    +vl ++++dL+ +
  CCE27615.1 1856 FLFRGPPGTGKSTTARKMGKVFYDMGFlsscQVLDCSASDLIGS 1899
                  5788************9998766655311115555555555554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.29   1.7e+02       3      16 ..     500     513 ..     498     543 .. 0.85
   2 !    8.1   0.0    0.0048       2.8       3      18 ..    1587    1602 ..    1586    1621 .. 0.89
   3 !    9.9   0.1    0.0013      0.76       3      19 ..    1857    1873 ..    1856    1889 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.29
      AAA_33   3 llvGlpGsGKstla 16 
                 ++ G+pG+GKs+  
  CCE27615.1 500 VIQGPPGTGKSFIG 513
                 678********865 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0048
      AAA_33    3 llvGlpGsGKstlaer 18  
                  ++vG pG+GK+t+a+ 
  CCE27615.1 1587 VFVGNPGTGKTTVAKL 1602
                  69***********985 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0013
      AAA_33    3 llvGlpGsGKstlaerl 19  
                  l+ G+pG+GKst a+++
  CCE27615.1 1857 LFRGPPGTGKSTTARKM 1873
                  799***********987 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.085        51       2      30 ..     500     525 ..     499     549 .. 0.72
   2 ?    7.2   0.0     0.011       6.3       2      41 ..    1587    1625 ..    1586    1633 .. 0.85
   3 !    8.7   0.0    0.0037       2.2       2      25 ..    1857    1880 ..    1856    1951 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.085
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkk 30 
                   +++Gp+g+GKS +    +kall++    +
    CCE27615.1 500 VIQGPPGTGKSFIGALAVKALLSNN---E 525
                   689********99888777777433...3 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.011
  RNA_helicase    2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnped 41  
                    +++G++g+GK+t+ak    ++l +l+l ++++v+++np+d
    CCE27615.1 1587 VFVGNPGTGKTTVAKL-YGQILVDLGLLSNGEVIVKNPSD 1625
                    689***********98.77777788888889999988865 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0037
  RNA_helicase    2 wlyGpsgeGKStlakeLakallkk 25  
                    ++ Gp+g+GKSt+a+++ k + + 
    CCE27615.1 1857 LFRGPPGTGKSTTARKMGKVFYDM 1880
                    689*************77766533 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.019        11      26      55 ..     498     531 ..     484     641 .. 0.66
   2 ?    5.8   0.0     0.028        17      28      45 ..    1587    1604 ..    1562    1627 .. 0.83
   3 !    8.2   0.0    0.0051         3      27      48 ..    1856    1876 ..    1839    1970 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.019
      AAA_16  26 lvllsGesGvGKsslvrellralekd....ggif 55 
                 + ++ G++G+GKs +   + +al  +    ++++
  CCE27615.1 498 VSVIQGPPGTGKSFIGALAVKALLSNnessRILV 531
                 3469**********98777777776644333333 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.028
      AAA_16   28 llsGesGvGKsslvrell 45  
                  +++G++G+GK+++++   
  CCE27615.1 1587 VFVGNPGTGKTTVAKLYG 1604
                  689**********98665 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0051
      AAA_16   27 vllsGesGvGKsslvrellral 48  
                   l++G++G+GKs+ +r+  + +
  CCE27615.1 1856 FLFRGPPGTGKSTTARKMGK-V 1876
                  6899***********99874.3 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.19   1.2e+02      58      84 ..     501     527 ..     493     541 .. 0.79
   2 ?    4.4   0.0     0.064        38      51      85 ..    1581    1615 ..    1541    1626 .. 0.69
   3 !   10.7   0.0   0.00073      0.44      35      86 ..    1835    1886 ..    1826    1896 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.19
                 EEE-TTSSHHHHHHHHHHHHSTTGGGS CS
      Torsin  58 fhGwtGtGknfvaeiiaenlyrdGlrs 84 
                 + G +GtGk+f+  + +++l  +   s
  CCE27615.1 501 IQGPPGTGKSFIGALAVKALLSNNESS 527
                 57999*******999999887766555 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.064
                  SS-EEEEEEE-TTSSHHHHHHHHHHHHSTTGGGST CS
      Torsin   51 kkpLvlsfhGwtGtGknfvaeiiaenlyrdGlrsd 85  
                  +  L   f G +GtGk  va++  + l   Gl s+
  CCE27615.1 1581 EYNLNRVFVGNPGTGKTTVAKLYGQILVDLGLLSN 1615
                  345666799************99999988888876 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00073
                  HHHHHHHHHHHT-SS-SS-EEEEEEE-TTSSHHHHHHHHHHHHSTTGGGSTT CS
      Torsin   35 klvvksvkaylenekpkkpLvlsfhGwtGtGknfvaeiiaenlyrdGlrsdy 86  
                  ++ v+++ +   ++k + p+++ f G +GtGk+  a+ + +  y  G  s++
  CCE27615.1 1835 QHTVRAMSSMGMDPKETIPFTFLFRGPPGTGKSTTARKMGKVFYDMGFLSSC 1886
                  578999999999***********************************99887 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.18   1.1e+02       6      33 ..     500     526 ..     496     574 .. 0.78
   2 !    7.1   0.0    0.0068       4.1       6      27 ..    1587    1607 ..    1583    1676 .. 0.80
   3 !    7.6   0.0    0.0046       2.7       8      27 ..    1859    1877 ..    1854    1895 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.18
      AAA_24   6 liyGpsgiGKTtlakelgpkplfidtek 33 
                 +i Gp+g+GK+ + + +  k+l+ + e 
  CCE27615.1 500 VIQGPPGTGKSFIGALA-VKALLSNNES 526
                 899********999988.8888777766 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0068
      AAA_24    6 liyGpsgiGKTtlakelgpkpl 27  
                  + +G +g+GKTt+ak +  ++l
  CCE27615.1 1587 VFVGNPGTGKTTVAKLY-GQIL 1607
                  678************99.5555 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0046
      AAA_24    8 yGpsgiGKTtlakelgpkpl 27  
                   Gp+g+GK+t+a+++  k++
  CCE27615.1 1859 RGPPGTGKSTTARKM-GKVF 1877
                  59*************.6655 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     3e-05     0.018      27      82 ..     499     554 ..     479     607 .. 0.80
   2 ?    0.2   0.0       1.1   6.6e+02      21      41 ..    1580    1600 ..    1554    1607 .. 0.70
   3 ?   -2.9   0.1       9.9   5.9e+03      26      42 ..    1855    1871 ..    1832    1877 .. 0.82
   4 ?   -0.4   0.0       1.7     1e+03     130     155 ..    1914    1939 ..    1899    1955 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3e-05
                 EEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.. CS
      ResIII  27 glikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseay 82 
                  +i+ + GtGK+++ a ++++ll++++ +++l+l  +++ l+q l+++ k+  +++
  CCE27615.1 499 SVIQGPPGTGKSFIGALAVKALLSNNESSRILVLSYTNHALDQFLKDLIKIGIDPK 554
                 57999****************************************99977666554 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.1
                  ..TTSEEEEEESTTSTHHHHH CS
      ResIII   21 skrdkrglikmaTGtGKTlva 41  
                  ++ + + +++   GtGKT va
  CCE27615.1 1580 IEYNLNRVFVGNPGTGKTTVA 1600
                  3667788899999*****997 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 9.9
                  EEEEEESTTSTHHHHHH CS
      ResIII   26 rglikmaTGtGKTlvaa 42  
                   +l+  + GtGK+ +a 
  CCE27615.1 1855 TFLFRGPPGTGKSTTAR 1871
                  6789999*****99985 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.7
                  TTT-SEEEEETGGGTTS.TTTHHHHH CS
      ResIII  130 rdrfdviiiDEaHrlgakkswreile 155 
                  +   +v+++DEa rl++ +  +e+l+
  CCE27615.1 1914 KALGQVLLVDEAYRLSEGSYAKEALD 1939
                  444569**********9643344544 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00032      0.19       8      55 ..     485     532 ..     480     543 .. 0.76
   2 ?    5.3   0.0      0.02        12      15      45 ..    1578    1609 ..    1563    1642 .. 0.63
   3 ?   -0.8   0.0       1.4   8.4e+02      24      40 ..    1858    1874 ..    1841    1882 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE CS
        PhoH   8 eQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriilt 55 
                 +Q+++l +   + + ++ Gp GtGK+++   +  ++l++++ +ri+++
  CCE27615.1 485 AQRDALVNALGSAVSVIQGPPGTGKSFIGALAVKALLSNNESSRILVL 532
                 5666655556778999************97655556677888898765 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.02
                  HHHH-SE.EEEE--TTSSTTHHHHHHHHHHHH CS
        PhoH   15 alkkndi.vfaiGpaGtGKtylavalavealk 45  
                  ++ ++++  + +G+ GtGKt +a  ++  ++ 
  CCE27615.1 1578 SIIEYNLnRVFVGNPGTGKTTVAKLYGQILVD 1609
                  333444414679***********988866555 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.4
                  EE--TTSSTTHHHHHHH CS
        PhoH   24 aiGpaGtGKtylavala 40  
                    Gp GtGK+  a  ++
  CCE27615.1 1858 FRGPPGTGKSTTARKMG 1874
                  469*******9998876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.16        98      37      72 ..     500     535 ..     490     564 .. 0.77
   2 !    8.3   0.0    0.0025       1.5      14      52 ..    1563    1602 ..    1554    1611 .. 0.75
   3 ?    5.2   0.0     0.023        13      35      54 ..    1855    1874 ..    1836    1888 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.16
       AAA_7  37 llvGptGtGKtviikdllkkldkekylsltinfsaq 72 
                 ++ Gp GtGK+ i    +k+l +++ +s ++ +s++
  CCE27615.1 500 VIQGPPGTGKSFIGALAVKALLSNNESSRILVLSYT 535
                 578*********988877777766665555555554 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0025
       AAA_7   14 Vptvdtvrysyll.elllknkkpvllvGptGtGKtviikd 52  
                  V  ++t  ++ l  e +++ + + ++vG+ GtGKt+++k 
  CCE27615.1 1563 VDSIQTNYQRELQeESIIEYNLNRVFVGNPGTGKTTVAKL 1602
                  5555554444444145899999**************9875 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.023
       AAA_7   35 pvllvGptGtGKtviikdll 54  
                   +l+ Gp GtGK+++++++ 
  CCE27615.1 1855 TFLFRGPPGTGKSTTARKMG 1874
                  579************99875 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00013     0.079       1      48 [.     500     548 ..     500     589 .. 0.86
   2 ?    0.6   0.0      0.76   4.6e+02      74     119 ..     736     795 ..     688     798 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
  Helicase_RecD   1 vltAdRGRGKSaalGlalaaliaegk.snilvtapskenvktlfeflak 48 
                    v+++ +G+GKS + +la++al+++++ s+ilv + ++++++++++ l+k
     CCE27615.1 500 VIQGPPGTGKSFIGALAVKALLSNNEsSRILVLSYTNHALDQFLKDLIK 548
                    7999*****************9999989*************99987765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.76
  Helicase_RecD  74 qrieyiapdellklkeqa.............dllvvDEAAai.plpllkkllekfkrvvl 119
                     r  +i+ ++++  +++a             d+++v+EA  i + ++l +l  + k+++l
     CCE27615.1 736 ARCAFIRTKQVIGCTTTAaakypgiikaanaDCVIVEEAGEIlEAHILAALSPDVKQLIL 795
                    4444444444444443334444444444444********987467788888777777665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.29   1.8e+02      22      44 ..     496     518 ..     477     540 .. 0.71
   2 ?   -1.3   0.0       2.6   1.6e+03      87     106 ..    1360    1378 ..    1351    1382 .. 0.77
   3 ?    5.3   0.1     0.024        14      15      42 ..    1576    1603 ..    1564    1660 .. 0.83
   4 ?    3.3   0.0     0.096        57      22      43 ..    1853    1874 ..    1831    1896 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.29
                      SS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat  22 dlsvlitGesGtGKellaraihe 44 
                      ++  +i+G  GtGK+++  +  +
       CCE27615.1 496 SAVSVIQGPPGTGKSFIGALAVK 518
                      456689*********99766554 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.6
                       HHHHHTTTSEEEEETGGGS- CS
  Sigma54_activat   87 GlfekadgGtlfLDeigelp 106 
                       G++ +a gG++f+De  +l+
       CCE27615.1 1360 GML-EAGGGVVFIDEAYQLS 1378
                       555.589********98887 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.024
                       HHHHCTSSS-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat   15 ikkvaktdlsvlitGesGtGKellarai 42  
                        +++++++l+ + +G+ GtGK+++a+++
       CCE27615.1 1576 EESIIEYNLNRVFVGNPGTGKTTVAKLY 1603
                       46788999999**************975 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.096
                       SS-EEEECSTTSSHHHHHHHHH CS
  Sigma54_activat   22 dlsvlitGesGtGKellaraih 43  
                       + + l +G  GtGK++ ar++ 
       CCE27615.1 1853 PFTFLFRGPPGTGKSTTARKMG 1874
                       57899*************9985 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.2   3.1e+03     150     179 ..     241     269 ..     226     287 .. 0.69
   2 !   16.9   0.0     5e-06     0.003       2      52 ..     497     548 ..     496     584 .. 0.82
   3 ?    0.6   0.0      0.43   2.6e+02      21     102 ..     699     779 ..     695     796 .. 0.85
   4 ?   -1.5   0.0       1.9   1.1e+03     345     360 ..    1022    1037 ..    1018    1038 .. 0.88
   5 ?    0.4   0.5      0.52   3.1e+02       8      18 ..    1590    1600 ..    1586    1609 .. 0.87
   6 ?   -0.9   0.1       1.2   7.5e+02       4      19 ..    1856    1871 ..    1855    1878 .. 0.83
   7 ?    0.7   0.0       0.4   2.4e+02      90     120 ..    1918    1942 ..    1898    1962 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.2
     DUF2075 150 lakkleveleekvhLksqfRvaaseaview 179
                 +a+  +++  ++++L++qfR  +++ ++e 
  CCE27615.1 241 IARSAPEDR-SRCQLDNQFRLLREDMLSEL 269
                 444444444.4459*******999887765 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 5e-06
     DUF2075   2 avvlVtGvaGtGKtvvllnllael.eddeeertavylsvNhplvlvlreala 52 
                 av +++G +GtGK+ ++  ++ +l +++e+ r  v+ + Nh+l + l+  ++
  CCE27615.1 497 AVSVIQGPPGTGKSFIGALAVKALlSNNESSRILVLSYTNHALDQFLKDLIK 548
                 689***************99999988889999999999*****999988776 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.43
     DUF2075  21 llaeleddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsef.kkaeekkeepkedvvivDEAhrllt 102
                 +l  ++++ +e+++  l+ N +++++l+ ++++     + + af + +++i  +++   k     +  ++d+viv EA  +l+
  CCE27615.1 699 MLKSWTKSIREERRDSLVSNVKEINALQVEIDRLF--DEARCAFIRTKQVIGCTTTAaAKYPGIIKAANADCVIVEEAGEILE 779
                 5556677889999999***************9999..99999**********99987766666778999********976665 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.9
     DUF2075  345 ayrVLLtRGrkGlyiy 360 
                  +++VLL+R+r+ l+ y
  CCE27615.1 1022 RLNVLLSRARNCLIMY 1037
                  79********998876 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.52
     DUF2075    8 GvaGtGKtvvl 18  
                  G++GtGKt v+
  CCE27615.1 1590 GNPGTGKTTVA 1600
                  9*******997 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 1.2
     DUF2075    4 vlVtGvaGtGKtvvll 19  
                  +l +G +GtGK+  + 
  CCE27615.1 1856 FLFRGPPGTGKSTTAR 1871
                  6779********8775 PP

  == domain 7  score: 0.7 bits;  conditional E-value: 0.4
     DUF2075   90 dvvivDEAhrlltksdqaekqseenqlkelm 120 
                  +v++vDEA rl + s +      ++ l+el+
  CCE27615.1 1918 QVLLVDEAYRLSEGSYA------KEALDELV 1942
                  799*********93333......33333333 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       2.1   1.3e+03       3      14 ..     500     511 ..     499     524 .. 0.88
   2 ?    4.9   0.0     0.048        29       3      17 ..    1587    1601 ..    1585    1605 .. 0.91
   3 ?    5.7   0.0     0.027        16       3      20 ..    1857    1874 ..    1855    1882 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.1
      AAA_28   3 vitGgestGKTt 14 
                 vi G+++tGK+ 
  CCE27615.1 500 VIQGPPGTGKSF 511
                 899*******95 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.048
      AAA_28    3 vitGgestGKTtlle 17  
                  v++G ++tGKTt+++
  CCE27615.1 1587 VFVGNPGTGKTTVAK 1601
                  89**********986 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.027
      AAA_28    3 vitGgestGKTtlleaLa 20  
                   + G+++tGK+t+++++ 
  CCE27615.1 1857 LFRGPPGTGKSTTARKMG 1874
                  578***********9875 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.5   1.5e+03      37      55 ..     500     518 ..     489     534 .. 0.80
   2 ?   -3.1   0.0       9.9   5.9e+03      84      96 ..    1365    1377 ..    1314    1380 .. 0.39
   3 ?    6.1   0.0     0.015       8.8      36      57 ..    1586    1607 ..    1543    1658 .. 0.66
   4 ?    3.4   0.0     0.098        59      36      56 ..    1856    1876 ..    1845    1940 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.5
      RuvB_N  37 llyGpPGlGkttlakiiak 55 
                 +++GpPG Gk+ + ++  k
  CCE27615.1 500 VIQGPPGTGKSFIGALAVK 518
                 689*******988766555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.9
      RuvB_N   84 ekdvlfideihrl 96  
                   + v+fide ++l
  CCE27615.1 1365 GGGVVFIDEAYQL 1377
                  2357777776666 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.015
      RuvB_N   36 vllyGpPGlGkttlakiiakel 57  
                   +++G PG Gktt+ak+  + l
  CCE27615.1 1586 RVFVGNPGTGKTTVAKLYGQIL 1607
                  2589***********9876654 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.098
      RuvB_N   36 vllyGpPGlGkttlakiiake 56  
                   l+ GpPG Gk+t a+ + k 
  CCE27615.1 1856 FLFRGPPGTGKSTTARKMGKV 1876
                  5899*********99877664 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.27   1.6e+02      24      38 ..     498     512 ..     486     528 .. 0.73
   2 ?    1.6   0.0      0.39   2.3e+02      24      38 ..    1585    1599 ..    1572    1602 .. 0.80
   3 ?    5.0   0.0     0.034        20      18      37 ..    1853    1868 ..    1836    1870 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.27
      AAA_29  24 atlltGpsGsGKSTl 38 
                 + ++ Gp G+GKS +
  CCE27615.1 498 VSVIQGPPGTGKSFI 512
                 67899********65 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.39
      AAA_29   24 atlltGpsGsGKSTl 38  
                  + +++G+ G+GK+T+
  CCE27615.1 1585 NRVFVGNPGTGKTTV 1599
                  4589*********96 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.034
      AAA_29   18 eidlkgatlltGpsGsGKST 37  
                  ++    ++l+ Gp G+GKST
  CCE27615.1 1853 PF----TFLFRGPPGTGKST 1868
                  33....489**********9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.037        22      86     116 ..     483     512 ..     460     530 .. 0.80
   2 ?    4.3   0.0     0.058        35      52     117 ..    1522    1601 ..    1515    1615 .. 0.66
   3 ?   -1.8   0.0       4.4   2.6e+03     101     115 ..    1855    1869 ..    1850    1874 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.037
                  THTTHHHHHHHCTTSEEEEECSTTSSHHHHH CS
  RsgA_GTPase  86 tkegleelkellkdktsvlvGqSGvGKStLi 116
                  + ++ ++l ++l + +sv+ G+ G GKS  i
   CCE27615.1 483 DAAQRDALVNALGSAVSVIQGPPGTGKSF-I 512
                  4457899********************84.3 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.058
                   EEE-GGG--HHH.....HHHHHHHHHHHTTSEEEE--TTTH.TTHH.HHHHHCTTSEE.......EEECSTTSSHHHHHH CS
  RsgA_GTPase   52 vlnKiDlleeee.....eleelkeelealgyevllvsaktk.egle.elkellkdkts.......vlvGqSGvGKStLin 117 
                   +l+K Dl+ +e      +++++++  + +g++ ++ s+k   ++++ + +++l+++ +       v+vG+ G GK+t+ +
   CCE27615.1 1522 LLTKKDLIGTEPsaaleHCKAWSQLQHLIGLDAVKASVKALvDSIQtNYQRELQEESIieynlnrVFVGNPGTGKTTVAK 1601
                   688888887777777777777888888888888887777432222212333333322112222239**********9764 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 4.4
                   EEEEECSTTSSHHHH CS
  RsgA_GTPase  101 tsvlvGqSGvGKStL 115 
                   t ++ G+ G GKSt 
   CCE27615.1 1855 TFLFRGPPGTGKSTT 1869
                   56799********96 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0023       1.4       3      73 ..     485     552 ..     483     590 .. 0.82
   2 ?   -2.9   0.0       8.3     5e+03      16      32 ..    1585    1601 ..    1572    1608 .. 0.69
   3 ?   -1.2   0.0       2.5   1.5e+03     115     136 ..    1640    1661 ..    1609    1689 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky 73 
                  Q+ a+ ++lg    +++++ G+GK+ + +++v + ++   +++  ++l+++ t     q l++l k++  
  CCE27615.1 485 AQRDALVNALGSAVSVIQGPPGTGKSFIGALAVKALLS---NNESSRILVLSYTNHALDQFLKDLIKIGID 552
                 6899999999999999************9999998884...69999****************999998874 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.3
                  EEEEEESTTSSHHHHHH CS
                  xxxxxxxxxxxxxxxxx RF
        DEAD   16 dvlvaaeTGsGKTlafl 32  
                  + +  ++ G+GKT+++ 
  CCE27615.1 1585 NRVFVGNPGTGKTTVAK 1601
                  44566788*****9975 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.5
                  TSSHCTTEEEEEEETHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  115 gklnlsqvrflVlDEadrlldq 136 
                  g l     ++lV+DEa +l + 
  CCE27615.1 1640 GILAATAGKVLVIDEAYGLCSP 1661
                  3355677799******988776 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.036        21      32      50 ..     495     513 ..     471     525 .. 0.81
   2 ?    1.8   0.0      0.26   1.6e+02      37      50 ..    1587    1600 ..    1568    1606 .. 0.91
   3 ?    0.7   0.1      0.56   3.4e+02      37      50 ..    1857    1870 ..    1853    1874 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.036
      AAA_25  32 agelallaGapgtGKttla 50 
                   +++++ G+pgtGK+++ 
  CCE27615.1 495 GSAVSVIQGPPGTGKSFIG 513
                 57899************85 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.26
      AAA_25   37 llaGapgtGKttla 50  
                  +++G pgtGKtt+a
  CCE27615.1 1587 VFVGNPGTGKTTVA 1600
                  579*********97 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.56
      AAA_25   37 llaGapgtGKttla 50  
                  l+ G+pgtGK+t a
  CCE27615.1 1857 LFRGPPGTGKSTTA 1870
                  5679********87 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00027      0.16       3      59 ..     484     540 ..     482     609 .. 0.78
   2 ?    0.1   0.0      0.77   4.6e+02     274     294 ..     781     801 ..     777     802 .. 0.89
   3 ?   -3.5   6.6       9.3   5.6e+03     116     175 ..    1198    1260 ..    1139    1325 .. 0.48
   4 ?   -1.5   0.0       2.3   1.4e+03       5      29 ..    1575    1599 ..    1571    1602 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00027
                    HHHHHHHHS.-SSEEEEE.E-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHH CS
  UvrD-helicase   3 peqreaias.lggpilve.AsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAae 59 
                    + qr+a+++ lg+ + v+   +G+GK+f+ a  +  l+ ++  e +rilv+ +Tn A +
     CCE27615.1 484 AAQRDALVNaLGSAVSVIqGPPGTGKSFIGALAVKALLSNN--ESSRILVLSYTNHALD 540
                    5677777776666665550568******8777777777766..9***********9965 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.77
                    HHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase 274 rilkllasgheelfmvGDpkQ 294
                    +il  l+ + ++l+++GD kQ
     CCE27615.1 781 HILAALSPDVKQLILIGDHKQ 801
                    689999999999********* PP

  == domain 3  score: -3.5 bits;  conditional E-value: 9.3
                     TTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCH.....HHHCCCH CS
  UvrD-helicase  116 pnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnik.....keelsls 175 
                     ++ r+l++e+ e+++ +++l++   + +d +++++ ++++k+++e    ++ +      ++ + +
     CCE27615.1 1198 RQRRLLKDEQ-EKAEEKKILQQHRLDLEDLKETVEIQNARKKAEETATLNQ-DasskdAQKDQVD 1260
                     1112221111.1233333333333333333333333333333222111111.1112222222222 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2.3
                     HHHHHHS-SSEEEEEE-TTSSHHHH CS
  UvrD-helicase    5 qreaiaslggpilveAsAGsGKTfv 29  
                     q+e i  ++ + + +  +G+GKT+v
     CCE27615.1 1575 QEESIIEYNLNRVFVGNPGTGKTTV 1599
                     66666666777788889******98 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       7.7   4.6e+03      27      44 ..     495     511 ..     488     523 .. 0.70
   2 ?    2.6   0.0     0.091        54      34      76 ..    1588    1631 ..    1564    1639 .. 0.84
   3 ?    4.9   0.0     0.018        11      35      78 ..    1859    1902 ..    1854    1916 .. 0.85
   4 ?    0.2   0.3       0.5     3e+02     200     265 ..    2159    2225 ..    2046    2227 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 7.7
                 S-SEEEEEEE-TTSSHHH CS
        MeaB  27 GraqvvGltGvPGaGkst 44 
                 G a  v + G PG+Gks 
  CCE27615.1 495 GSAVSV-IQGPPGTGKSF 511
                 555444.89*******95 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.091
                  EEE-TTSSHHHHHHHHHHHHHCTT-.-EEEEEE----------- CS
        MeaB   34 ltGvPGaGkstlvealglelrrrGk.rvavlavDPsspftGGsi 76  
                  + G PG+Gk t+ +  g+ l++ G    + + v   s f GG++
  CCE27615.1 1588 FVGNPGTGKTTVAKLYGQILVDLGLlSNGEVIVKNPSDFVGGAL 1631
                  579*******************9962345555666678889885 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.018
                  EE-TTSSHHHHHHHHHHHHHCTT--EEEEEE------------- CS
        MeaB   35 tGvPGaGkstlvealglelrrrGkrvavlavDPsspftGGsilG 78  
                   G PG+Gkst+  ++g  + + G   +   +D s++   Gs +G
  CCE27615.1 1859 RGPPGTGKSTTARKMGKVFYDMGFLSSCQVLDCSASDLIGSYVG 1902
                  599******************99988888888887777777666 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.5
                  BTTB--EEEEEBCCCTBSH.HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC- CS
        MeaB  200 ekeWrpkvlktsavegeGi.delvdaieehrevlkktGllekrrrerakeelrelvedellkrvkaa 265 
                   ++  p +    +v+  G+ de+++++e+ +e+  +  + +++++ ra + + e  + +++k+++++
  CCE27615.1 2159 PESSVPGIRSKLGVRDAGVsDEVWHQLEQDAEAEARRDQEHEKKKLRARDTADEALRARIIKELMEE 2225
                  4455677888889999999679*******99999999898899998999999999999988888776 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       1.4   8.4e+02      14      30 ..     499     515 ..     494     632 .. 0.74
   2 ?   -0.1   1.2       2.1   1.2e+03      79      97 ..    1207    1244 ..    1156    1329 .. 0.54
   3 ?    4.8   0.4     0.064        38      15      42 ..    1587    1618 ..    1579    1799 .. 0.75
   4 ?    1.0   0.0      0.93   5.6e+02      16      29 ..    1858    1871 ..    1853    1880 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.4
                 EEEEESTTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkl 30 
                  +i G+ G+GKS + +l
  CCE27615.1 499 SVIQGPPGTGKSFIGAL 515
                 5799********87544 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 2.1
                  H...................HHHTCHHHHHHHSTTGGT CS
                  x...................xxxxxxxxxxxxxxxxxx RF
    ABC_tran   79 n...................esdeeiekalsklglkel 97  
                  +                   ++++ei++a++k + + +
  CCE27615.1 1207 QekaeekkilqqhrldledlKETVEIQNARKKAEETAT 1244
                  13333333333333333333333333333333333332 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.064
                  EEEESTTSSHHHHHHHHTTSS--....SEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxx....xxxxx RF
    ABC_tran   15 aivGenGaGKStLlkllagllkp....teGei 42  
                  ++vG+ G+GK+t++kl  + l +     +Ge+
  CCE27615.1 1587 VFVGNPGTGKTTVAKLYGQILVDlgllSNGEV 1618
                  789*********99974443333333345554 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.93
                  EEESTTSSHHHHHH CS
                  xxxxxxxxxxxxxx RF
    ABC_tran   16 ivGenGaGKStLlk 29  
                  + G+ G+GKSt ++
  CCE27615.1 1858 FRGPPGTGKSTTAR 1871
                  57*********887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1487  (0.0829383); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 1.44u 0.36s 00:00:01.79 Elapsed: 00:00:00.59
# Mc/sec: 11657.76
//
Query:       CCE27616.1  [L=525]
Description: uncharacterized protein CPUR_01090 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3809.66
//
Query:       CCE27617.1  [L=514]
Description: uncharacterized protein CPUR_01091 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-45  154.6  45.4    2.7e-42  145.0  21.1    2.0  2  MFS_1     Major Facilitator Superfamily
    2.3e-13   49.8  27.8    7.2e-13   48.2   7.6    3.4  4  Sugar_tr  Sugar (and other) transporter
    0.00044   18.7  16.1     0.0026   16.1   1.0    3.9  3  OATP      Organic Anion Transporter Polypeptide (OATP) family
     0.0055   15.3   1.6     0.0055   15.3   1.6    3.2  3  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0  21.1     6e-46   2.7e-42       2     276 ..      77     370 ..      76     373 .. 0.88
   2 !   15.7  16.3   1.2e-06    0.0053      66     184 ..     388     508 ..     387     514 .] 0.72

  Alignments for each domain:
  == domain 1  score: 145.0 bits;  conditional E-value: 6e-46
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslw.lllvlrvlqGlg 98 
                  la+++  l+ +i++p+lp +l +++ +  ++i+  ++++++++a+a l+++ ++dr Grr++++++l +f+l+ +ll+++ +  +  l++lrvl ++g
  CCE27617.1  77 TLAGLVGPLSGAIYLPVLP-LLEREFDVGSTSINATVSVFMVTFAFAPLFWSTFADRGGRRPLYVISLSIFILSnVLLAAL-PKNFgSLMFLRVLHAFG 173
                 578899999**********.9*****************************************************6666666.55555************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 ++a++++ga  +ad++ +++rg+ ++++ +g ++G+++gp+lg++l  +lgWr++  +lai ++++ +++++ lpe+ + r+ + +  ++         
  CCE27617.1 174 SAAVVSMGAGTVADITEPKKRGSSMSVFLLGPQCGPVFGPILGSALGGQLGWRWIPGFLAITCFVLWLVIIFMLPETLRYRAGNGQMAQKqgwilwppk 272
                 ******************************************************************999999999999999999999999999****** PP

       MFS_1 189 ........kgtgpaplvp....awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrr 275
                         + +gp+p +p     wk++  +p + i+ +  +l    ++++l+ lp  l +v+++s   ++gl + +++++ +i++l++g+lsd   +rr
  CCE27617.1 273 ltsdmvaeSERGPKPPKPtlkgYWKLFSYPP-IGIVSVNTALLYSTYFAMLVALPHALEDVYHWS-TTEVGLGYLAVGVALMIGSLVGGKLSDWRRSRR 369
                 *****99988888888888998899888888.3334444444444777799999999********.677775577777777777*********977766 PP

       MFS_1 276 r 276
                 +
  CCE27617.1 370 A 370
                 5 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.2e-06
       MFS_1  66 llglllfalglllll..fa...sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilai 159
                 ++g+ll ++g ++++  f+    ++ +++++ +l+G+g++++f a  a++ + +p  + + a++l ++  + Ga++++++ + l+   g  ++f  +a+
  CCE27617.1 388 IWGVLLCVAG-TIMFgwFIsssLHVSAVIIATFLTGFGMSWVFVATTAFLGECVPL-QAAGAFALGNMLRNPGAAIAAVVYPPLVRKMGVGWLFTGFAL 484
                 5788888888.4444436433223447*****************************.***********8888888888888888888888888888888 PP

       MFS_1 160 vsllafvlfllllpeepperkrksp 184
                 + l+++  +++ +++ + +++rk++
  CCE27617.1 485 LDLVVVG-GAVIVLRVYGPSWRKKK 508
                 7777722.22333333444443333 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   7.6   1.6e-16   7.2e-13      45     205 ..     105     261 ..      22     299 .. 0.86
   2 !    2.7   0.1      0.01        45      36      72 ..     327     364 ..     298     373 .. 0.72
   3 !    7.1   7.2   0.00047       2.1      82     141 ..     390     450 ..     383     479 .. 0.87
   4 !    3.4   4.1    0.0062        28     352     429 ..     412     489 ..     411     498 .. 0.69

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 1.6e-16
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHH CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsly 143
                 s+ + ++vs+f+v  ++  lf ++++dr GR++ ++i+  +f+ ++vl aa +  +++  l++ Rvl  +g  ++  +   +++ i+ +k+Rg  +s++
  CCE27617.1 105 STSINATVSVFMVTFAFAPLFWSTFADRGGRRPLYVISLSIFILSNVLLAALP--KNFGSLMFLRVLHAFGSAAVVSMGAGTVADITEPKKRGSSMSVF 201
                 5567799**********************************************..79****************************************** PP

                 HHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHH.HHHHHHHHGGGS---HHHHHHTT-HH CS
    Sugar_tr 144 qlaitfGilvaaifglglnktsnadgwrillglqlv.pallllilllflPESPrylvekgkee 205
                  l+ + G +++ i+g +l       gwr+  g+ ++   +l l+++++lPE+ ry   +g+  
  CCE27617.1 202 LLGPQCGPVFGPILGSALGGQ---LGWRWIPGFLAItCFVLWLVIIFMLPETLRYRAGNGQMA 261
                 *************98877544...569988876665155677788899*******98888755 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.01
                 -SHHHHHH....HHHHHHHTHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  36 ksksskee.ssvlsglivsiflvGaiiGslfagllgdr 72 
                 ++ ++ +  s++ +gl   ++ v  +iGsl++g+l+d+
  CCE27617.1 327 HALEDVYHwSTTEVGLGYLAVGVALMIGSLVGGKLSDW 364
                 3333333378889999999*****************97 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.00047
                 HHHHHHHHHHHHH-TTTT.SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHH CS
    Sugar_tr  82 aavlfvigavlqaaakgk.nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvs 141
                 +++l+v+g+++ ++  +   +v ++i++ +l+G+g+ ++ v ++ +++E  p + +ga+  
  CCE27617.1 390 GVLLCVAGTIMFGWFISSsLHVSAVIIATFLTGFGMSWVFVATTAFLGECVPLQAAGAFAL 450
                 67899999999999886668************************************99765 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.0062
                 HHHHHHHHHHHHHTTTTHHHH.HHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHH CS
    Sugar_tr 352 aivfialfialfalgwgpvpw.vlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlf 429
                 + v ia f+  f+++w  v     + E  p++  + a a+  ++ +    + ++++p ++ ++g g+ f  fa l +++
  CCE27617.1 412 SAVIIATFLTGFGMSWVFVATtAFLGECVPLQAAG-AFALGNMLRNPGAAIAAVVYPPLVRKMGVGWLFTGFALLDLVV 489
                 56778888888888887776414567888888765.5677888888888888888888888888555555555555444 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.4   0.00023         1       3      87 ..      73     158 ..      71     162 .. 0.83
   2 !   16.1   1.0   5.7e-07    0.0026     138     354 ..     166     361 ..     158     373 .. 0.74
   3 ?    1.0   2.0     0.022     1e+02     341     396 ..     392     447 ..     384     462 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00023
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   3 lvllsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggr.ghrPrwigigallmalgslllalPh 87 
                 lvl+ l+glv  +++++   ++  +E++F+  s+++   +s++ ++ +++ lf s f++r g+rP ++   ++++    ll alP+
  CCE27617.1  73 LVLVTLAGLVGPLSGAIYLPVLPLLEREFDVGSTSINATVSVFMVTFAFAPLFWSTFADRgGRRPLYVISLSIFILSNVLLAALPK 158
                 67777888888788888888999*************************************77888776666666666778888886 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 5.7e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 138 aqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllklyvdidseisltpkdprWvgaWWlgflilgvllllaaiplffF 236
                   +l+++G+++++++G   + D +++k+    ++++      Gp++G +lGs+l     ++                W  gfl +++++l ++ ++f++
  CCE27617.1 166 LRVLHAFGSAAVVSMGAGTVADITEPKKRGSSMSVFLLGPQCGPVFGPILGSALGG---QL-------------GWRWIPGFLAITCFVLWLV-IIFML 247
                 56788999999999999999999999999988888888888888888888886554...22.............1246679999988877665.889** PP

                 xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 237 Pkelpkkkeerakkkseeesa...ekkeekkkkeksksseeeelkslkdfpkalkrllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseA 332
                 P++l+ ++ + ++++++       +     +++  ++s++    k+ k  +k +++l++ p   +v++ +++ ++ + ++ + lp  lE  ++ s++e 
  CCE27617.1 248 PETLRYRAGNGQMAQKQGWILwppK----LTSDMVAESER--GPKPPKPTLKGYWKLFSYPPIGIVSVNTALLYSTYFAMLVALPHALEDVYHWSTTEV 340
                 ***9977777766655533324321....22222222222..33456778888*****************************************99876 PP

                 xxxxxxxxxx.xxxxxxxxxxxx RF
        OATP 333 nlltGvvvip.gaalGillgGll 354
                  l  G++++  + ++G l+gG l
  CCE27617.1 341 GL--GYLAVGvALMIGSLVGGKL 361
                 65..6666641456899999976 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.022
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 341 ipgaalGillgGllvkklklsakklaklvlvvsllsllllllllflgCetskvagv 396
                 ++++a  i++g ++ + l++sa  +a++ + +++  +++  + ++ +C   + ag 
  CCE27617.1 392 LLCVAGTIMFGWFISSSLHVSAVIIATFLTGFGMSWVFVATTAFLGECVPLQAAGA 447
                 44555556667777888999999999999999999999999999999999998886 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.6   1.2e-06    0.0055     261     346 ..     108     192 ..      65     219 .. 0.79
   2 ?   -0.1   7.5     0.059   2.6e+02     293     343 ..     388     440 ..     386     444 .. 0.85
   3 ?    0.2   0.5     0.049   2.2e+02     260     309 ..     447     496 ..     441     507 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-06
       MFS_2 261 asvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDyg 346
                 +++   v+++  + + ++w+ +a r g++ +y++++++ i+  vl+ +l p+n   +++l v+  fg ++ +++ + ++ad+++  
  CCE27617.1 108 INATVSVFMVTFAFAPLFWSTFADRGGRRPLYVISLSIFILSNVLLAAL-PKNFGSLMFLRVLHAFGSAAVVSMGAGTVADITEPK 192
                 444445556666677779*******************************.*****************9999999999999998854 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.059
       MFS_2 293 llgalltivllvlvlll..qpsnlllflvllviagfgvgvaallpwsmladvv 343
                 ++g ll++++++++ ++  +  ++ +++++++++gfg+   +++ +++l+++v
  CCE27617.1 388 IWGVLLCVAGTIMFGWFisSSLHVSAVIIATFLTGFGMSWVFVATTAFLGECV 440
                 677888888888777775577888899999*******************9997 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.049
       MFS_2 260 aasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll 309
                 a+++  ++   +a++++++ +pl++++g   ++  +all +v   +++++
  CCE27617.1 447 AFALGNMLRNPGAAIAAVVYPPLVRKMGVGWLFTGFALLDLVVVGGAVIV 496
                 55566666667888999999999999999999999998877777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 3560.01
//
Query:       CCE27618.1  [L=605]
Description: uncharacterized protein CPUR_01092 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-130  435.8  13.9   2.5e-130  435.3  13.9    1.2  1  ATG22            Vacuole effluxer Atg22 like
  ------ inclusion threshold ------
       0.18   11.6   2.7       0.49   10.2   1.7    2.2  2  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l
       0.18   10.0   7.4      0.012   13.9   0.7    2.0  2  BT1              BT1 family
        9.4    5.9   6.8        1.5    8.5   0.7    2.6  3  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.3  13.9  5.5e-134  2.5e-130       2     478 .]      73     584 ..      72     584 .. 0.96

  Alignments for each domain:
  == domain 1  score: 435.3 bits;  conditional E-value: 5.5e-134
       ATG22   2 tkkellgWylyafaaevfavvavgsfvPllleqlarenGvllsdksapCsakgdeqcvvkflgieidtaSfvlytfslsvllqavvvislsglADygny 100
                 tkk+l++W++++f+++++  + v+s+v++ ++++a++ G+    +++pC ++g  +cvvk++g+++d+ S+ ly++s+s ++++vv+i  sglAD+++y
  CCE27618.1  73 TKKALWAWLILCFSTGPTNGM-VNSYVTASIQSAANAVGH-IPGTNKPCARRGAIKCVVKLGGRDVDYLSYLLYLRSISRATEGVVSILASGLADFSDY 169
                 89*******************.******************.67889***************************************************** PP

       ATG22 101 rknlLlafaligslstilfllvtpkkY...llgavlyivsntcfgaslvllnsfLPllvredpelqeaeeeeeeeeessetaeeeeskelklstriSsl 196
                 rk++++a+++++++++++f+++t++ Y    ++++ly+  +t+ g+++v++ s++P+++r+  ++ ++e    +   ++e a ++ +k + +++++S+l
  CCE27618.1 170 RKTMMMASIYLFGVLALPFAGLTGNDYghlNALSTLYVAISTVSGIYTVIEASYIPIFMRSVGWFGQREAMRMQ---DQERATKSVNKTWIQGSKVSVL 265
                 ****************************8888999*****************************9444333333...36777788889999******** PP

       ATG22 197 Glaigylgailvqiisilivialgsta..................................tfslrlalllvGlwWliftipaalllkkrpgpplpkgl 261
                 Gl++g+lgail ++i+++i++++gs                                     fs+ la+++ G+++++++ +  +ll++ pg p pkg+
  CCE27618.1 266 GLVSGNLGAILGLLIGVIITYSRGSYVtegyfkyvfpsldssfpdvsflyeesvsnasadeDFSFLLAITVGGCLTILCAGVGHFLLPNIPGAPKPKGK 364
                 *************************9899********************************************************************** PP

       ATG22 262 syliygwkslgrtlkqarklkdvllfLvawfllsdgiatvsstavlfaktelkmstak..lillsivaviaavlGaflwplvsrrlnlktkktllaiiv 358
                 s++ +++++++++++++r+++++++f+++w+l+++++++++++ + ++ ++ +++  +  +++++++ vi+a++G+++w +  rr++l +k++++++++
  CCE27618.1 365 SIFLLPLRTWLKLFTSIRRYPNAFKFCAGWVLWNTAYSNFLQLLAALFLETSGIQRGSniYTVYTFMMVIFACVGSLSWLFTFRRTKLHIKHWAYIFLC 463
                 ***************************************999888888888888777777*************************************** PP

       ATG22 359 lfeliplyGllGii.lgkiGlkqpwEfyvlavvyglvlgglssysRslfseLiPrGkEaaFFsLyaitdkgssvigplivglItDrtgnirsafvflav 456
                 +  l+ l+G++Gi   + iG+k+++Ef+v  +++++++++l+s++R+l+++LiP+G+EaaFF+L+ ++d ++++i+pl+ g+I+Drt+n+r++++++++
  CCE27618.1 464 VNGLCILWGCIGISnSSPIGYKHQAEFWVADALFMSTSSALRSLNRVLYASLIPKGSEAAFFGLEITLDLATGWINPLVQGAIQDRTHNLRFPMIPNLL 562
                 **************999********************************************************************************** PP

       ATG22 457 Llvvplpllllvdvergrreae 478
                 L++v+ +l+++ dv++g r+ae
  CCE27618.1 563 LILVGGGLYIWTDVDKGVRDAE 584
                 *******************985 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.16   7.1e+02      49      68 ..     231     250 ..     224     254 .. 0.84
   2 ?   10.2   1.7   0.00011      0.49      11      45 ..     250     283 ..     240     289 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.16
  Phage_holin_2_4  49 vnWyYkreanRRaaaehelr 68 
                      v W+ +rea R + +e + +
       CCE27618.1 231 VGWFGQREAMRMQDQERATK 250
                      88*********999887765 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00011
  Phage_holin_2_4  11 aagnkatggGavvsfaGflasselialvGlavAli 45 
                         nk+ + G+ vs++G + s +l a++Gl++ +i
       CCE27618.1 250 KSVNKTWIQGSKVSVLGLV-SGNLGAILGLLIGVI 283
                      5679*************76.6789******99886 PP

>> BT1  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.1       0.1   4.5e+02      27     109 ..     139     222 ..     130     232 .. 0.69
   2 ?   13.9   0.7   2.6e-06     0.012     312     445 ..     400     527 ..     393     534 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.1
         BT1  27 yqrlsglatlgwvikpltallsDgfallGytkrwYlvvscllgaafallygllpakeasakvaaafi.llsslgkaivdvlsda 109
                 ++ l +l ++  +   ++++l+ g+a ++  ++  ++ s  l ++ al ++ l ++ +    a + + +  s   +i  v+  +
  CCE27618.1 139 LSYLLYLRSISRATEGVVSILASGLADFSDYRKTMMMASIYLFGVLALPFAGLTGNDYGHLNALSTLyVAISTVSGIYTVIEAS 222
                 566667777777888889999999999998888999999999888898888888877654444444404444445555555444 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.6e-06
         BT1 312 lylqlpgaldafylakaeClpdgPnfsyeflgtvkgvigsiagligvtlfnrllkklsyrlvfivttvlqvlaglfdlilvkrwnlklGisdhavyilg 410
                 +y +    l a++l +   + +     y+++  ++ +++ +++l + + f+r   kl ++    +   ++ l +l   i +++    +G   +a + + 
  CCE27618.1 400 AYSNFLQLLAALFLETSGIQRGS--NIYTVYTFMMVIFACVGSLSWLFTFRR--TKLHIKHWAYIFLCVNGLCILWGCIGISNS-SPIGYKHQAEFWVA 493
                 56666677899999999999998..5699999999999******99999888..58999999999999999******9999875.79************ PP

         BT1 411 dsvvlevlymlkfmPlvvllsrLcPrGsEsvvfal 445
                 d++++ + + l  +   vl ++L P+GsE+++f l
  CCE27618.1 494 DALFMSTSSALRSLN-RVLYASLIPKGSEAAFFGL 527
                 **************6.68999**********9976 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3      0.99   4.4e+03      10      27 ..     334     360 ..     328     385 .. 0.52
   2 ?    8.5   0.7   0.00033       1.5      17      91 ..     407     493 ..     390     513 .. 0.81
   3 ?   -0.6   0.0       0.2   9.1e+02      27      51 ..     549     574 ..     523     600 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.99
     DUF4131  10 lalllllllllllllrr.........r 27 
                 + ++++l++l++ + ++         +
  CCE27618.1 334 ITVGGCLTILCAGVGHFllpnipgapK 360
                 333333333333333333455555443 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00033
     DUF4131  17 llllllllrr.....rprrrvllllllllllallgfalrapqpnandlsqlles....gqeviveGvv...aslpeltgsgtrfvle 91 
                 ll++l+l  +      + ++v ++ +++++++++  +l + ++++ ++ +++      +  +i+ G +    s p  +++++ f+++
  CCE27618.1 407 LLAALFLETSgiqrgSNIYTVYTFMMVIFACVGSLSWLFTFRRTKLHIKHWAYIflcvNGLCILWGCIgisNSSPIGYKHQAEFWVA 493
                 33333333335555688899999****************************977999999999999999999999999999999986 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.2
     DUF4131  27 rprrrv.llllllllllallgfalra 51 
                 r+++ +  ++  lll+l+++g+++++
  CCE27618.1 549 RTHNLRfPMIPNLLLILVGGGLYIWT 574
                 44444404444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4487.82
//
Query:       CCE27619.1  [L=564]
Description: uncharacterized protein CPUR_01093 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.4e-104  349.4   0.0   1.8e-104  349.1   0.0    1.1  1  DIT1_PvcA   Pyoverdine/dityrosine biosynthesis protein
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.21   11.6   0.0    1.4  1  RNA_capsid  Calicivirus putative RNA polymerase/capsid protei


Domain annotation for each model (and alignments):
>> DIT1_PvcA  Pyoverdine/dityrosine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.1   0.0    2e-108  1.8e-104       1     275 [.     213     537 ..     213     539 .. 0.96

  Alignments for each domain:
  == domain 1  score: 349.1 bits;  conditional E-value: 2e-108
                 HHHHHHCT--EEEEE-------S-TTTSS-SS--HHHHHHHHHHHHHHHHHHHHSTT-EEEEEE--HHHHGGGTT--HHHHHHHHHHHHHHHHHCT... CS
   DIT1_PvcA   1 veefvsrkepielvLPAFPcKSpnkeKvlgklPDkgEelaLerLnklceeieevYepGakltiisDghvfsDligvddeevdaYgeeLrelakekg... 96 
                 v++f++r++++e++LPAFPcKS+++ Kvl+k PD+gE++aLe++++++++ie++YepGakl+iisDghvfsD+igvdd+ vd+Yg++L++++++++   
  CCE27619.1 213 VSHFTRRGQMVEFCLPAFPCKSSSTGKVLSKAPDRGEYMALEHMHRFIQDIEAMYEPGAKLWIISDGHVFSDCIGVDDDVVDWYGARLQAMNQQITtlq 311
                 789********************************************************************************************9999 PP

                 .-TT.EEEE-GGG-GGGGGG........................................TT-HHHHHHHHHHHH---HHHHHHHHT.TSHHHHHHHHH CS
   DIT1_PvcA  97 .led.iefvrlkdlleseee.aeeeseells.........................eeeyleeaeklrkeLlksfgedeeelrkeik.ededtlalYrg 166
                   +d i+f++l +l++s+++ ++++s+++ s                         ++++++eae++rk+L+++f+ d+eelr++++ +++++ alYrg
  CCE27619.1 312 gGKDrIGFRSLPELFASHCDsRGDSSSSSSSsssigdelssareiesmlpelvhhiATKMTREAEMCRKILVMGFQLDDEELRTMLSsQEASMIALYRG 410
                 95556*************996666666555589******************************************************99********** PP

                 HHHHHHHHH..--TT--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEESS---TTSSEEEB-SSTTS-TT...................S- CS
   DIT1_PvcA 167 fskflleDlaslpeakklskkklkkevkkvakemikRnkaysnlvelkfpdhvRLSIHasknggpKlgikllpqkdse..................ipt 247
                 fskf+leDla+++++++ls+++l+k+++kva+emi+Rn+aysnlv+  fp+hvRLSIHa++n+gpK+gi++l ++                     +pt
  CCE27619.1 411 FSKFMLEDLATNKYTSHLSRTQLRKKSAKVAFEMIQRNQAYSNLVQILFPHHVRLSIHAHDNAGPKFGIQMLGKHILPtdilppngtdsnccdklhVPT 509
                 *************************************************************************7444499******************* PP

                 GGGSEEE.EETTEEEEE-HHHHHHTT-E CS
   DIT1_PvcA 248 PWhscvvveadgevlllkkseveedale 275
                 PWh+c+v+++++++l+++ks+v+++al+
  CCE27619.1 510 PWHNCIVEIRGDAHLYITKSSVAHAALS 537
                 ***********************98875 PP

>> RNA_capsid  Calicivirus putative RNA polymerase/capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05      0.21      96     153 ..     291     351 ..     285     453 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
  RNA_capsid  96 kvldWnGtryaapnsskttsysGr....Ftsstvkteassssskssvssqstsstslsssss 153
                  v+dW G+r+ a n++ tt + G+    F s +    as+  s+ + ss+s+ss+s+ ++ s
  CCE27619.1 291 DVVDWYGARLQAMNQQITTLQGGKdrigFRSLPELF-ASHCDSRGDSSSSSSSSSSIGDELS 351
                 58************9999999996332254444332.2222333333334444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3950.90
//
Query:       CCE27620.1  [L=506]
Description: uncharacterized protein CPUR_01094 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-52  178.8   0.0      2e-52  178.5   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.5   0.0   1.1e-56     2e-52      19     440 ..      68     486 ..      48     498 .. 0.85

  Alignments for each domain:
  == domain 1  score: 178.5 bits;  conditional E-value: 1.1e-56
                 TCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHH CS
        p450  19 keelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleel 117
                 ++ +++++++   ++g   ++++ s+   ++++p++v e++++++ + ++  +++  ++   +  g +++ ++ge+wk+  r++ p l+ + +l    +
  CCE27620.1  68 QDTFNRYIKEPVTRHG-AAKIFFASRWNLLVHRPSYVAEIFKREDIYQKSGNQKKIPHSVLAALTGDNIISSRGETWKSYQRVIKPGLQAGANL---GV 162
                 4444444444444544.3578888999999**************99988887888888888999999************************444...44 PP

                 HHHHHHHHHHHHHCCCCHCS..EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHH CS
        p450 118 veeeaedlveklrkkagess..elditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklkeavk 214
                 +   a+ l + l + + +s    + i+  ++++++   ++  F++ f++l+++    +++ ++  +   +  ++ ++l fp+l+ +  + +++++e   
  CCE27620.1 163 LLGNAHALRDILVEAQAQSPrgGVGIQASIQRYTIANFAQSNFNVDFNTLKSDT--AYIHRIQYRI--KKEIFKPIFLNFPFLDTFGFPSRQRARELAS 257
                 44455555555444444444456*************************999994..5888888774..44457889*********************** PP

                 HHHHHHHHHHHHHHHCHCHC.SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT CS
        p450 215 klkdlldklieerretldsa.kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkre 312
                  + d l   +e     ld+  ++ + ++  all+a+   +++ ++++++ + +v+ l++aG+++   ++  +Ly+Lak+ +vq+ l++Ei    +d+ +
  CCE27620.1 258 HFTDQLVSALERTDTCLDDGaNDAKSKLPRALLSAR---QNG-TFTEKQFRDNVTILFVAGQENPQLAIISTLYLLAKHTSVQDDLYKEILA--HDDGP 350
                 *******************97777788888888886...555.7*********************************************655..55569 PP

                 -HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS......CTESSCTT-- CS
        p450 313 ptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg......nskrksfafl 403
                 +++d l ++p+l av+ E+LRl p++  l+ R+v+++v ++g  ++p+Gt v  n y+++rd   + ++ +eF+p R+  + +      + +r+  +f+
  CCE27620.1 351 ISQDGLHSMPLLSAVVLESLRLFPPIGQLINRQVSQPVWLGGeIFVPAGTYVGYNCYSTNRDSGAWgSDSNEFRPRRWGLNCQdiqkeyRRRRSRAEFI 449
                 ******************************************************************************98888899999777******* PP

                 TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTS CS
        p450 404 PFGaGpRnCiGerlArmelklflatlLqnFevelqpe 440
                  F  G R+C+Ger+A ++lk  l  l++  ++ l+p 
  CCE27620.1 450 SFHGGQRACLGERFALLQLKTTLYVLVKSLRWRLDPT 486
                 *********************************9884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3765.97
//
Query:       CCE27621.1  [L=284]
Description: related to ATP-binding cassette (ABC) transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-14   52.4   0.0    2.9e-13   50.5   0.0    1.9  1  ABC_tran     ABC transporter
    8.1e-11   42.3   0.2    0.00014   21.8   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00051   17.7   0.1    0.00067   17.3   0.1    1.1  1  DUF3584      Protein of unknown function (DUF3584)
    0.00089   19.0   0.0     0.0017   18.1   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
      0.002   17.6   0.0        1.6    8.1   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0034   17.9   0.0      0.005   17.4   0.0    1.2  1  AAA_23       AAA domain
     0.0039   17.0   0.0     0.0057   16.4   0.0    1.2  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
     0.0054   17.1   0.1      0.076   13.4   0.0    2.6  2  AAA          ATPase family associated with various cellular a
     0.0081   15.9   0.0      0.012   15.4   0.0    1.1  1  AAA_15       AAA ATPase domain
  ------ inclusion threshold ------
      0.011   16.2   1.8      0.047   14.1   1.8    1.9  1  AAA_16       AAA ATPase domain
      0.023   15.0   0.0       0.12   12.7   0.0    2.0  3  AAA_22       AAA domain
      0.023   14.9   0.8      0.039   14.2   0.3    1.6  2  AAA_28       AAA domain
      0.031   13.9   0.0      0.064   12.9   0.0    1.5  2  SRP54        SRP54-type protein, GTPase domain
      0.047   13.3   0.1       0.11   12.1   0.0    1.6  2  AAA_25       AAA domain
      0.051   13.5   0.0      0.085   12.8   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
      0.065   13.3   0.0       0.73    9.9   0.0    2.1  2  AAA_14       AAA domain
      0.091   11.4   0.0       0.12   11.0   0.0    1.1  1  AAA_13       AAA domain
       0.13   11.7   0.1       0.26   10.7   0.0    1.5  2  Arf          ADP-ribosylation factor family
       0.13   12.5   0.0       0.24   11.6   0.0    1.4  1  Roc          Ras of Complex, Roc, domain of DAPkinase
       0.16   12.2   0.1        0.3   11.3   0.1    1.4  1  AAA_33       AAA domain
       0.17   11.8   0.1        0.3   11.0   0.1    1.4  1  NACHT        NACHT domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   3.4e-16   2.9e-13       2     136 ..      24     159 ..      23     160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 3.4e-16
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 ++++l+l + +++ ++G nGaGK+tLl+llag+    + +i + g d  +     + + + +l  e  l+p ++  +              +  ++ ++
  CCE27621.1  24 QDITLDLPPRSRTLLIGANGAGKTTLLRLLAGKRLAPSKTIDICGVDPFQ----DSLEGVTYLGLEWVLNPIVR--NDigvvellrsvggdAFPDRRDE 116
                 799**************************************888766655....78888899999877777663..33457777888777677777777 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++s l+++   + ++    + +S G+++rv+la+ ll+  ++l+lDE t
  CCE27621.1 117 LVSLLDIDT--NWRM----HAVSDGERRRVQLAMGLLRPWTVLFLDEIT 159
                 777777666..5555....99**************************87 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.6e-07   0.00014       2      21 ..      36      55 ..      35      96 .. 0.83
   2 !   18.8   0.0   1.3e-06    0.0011     229     297 ..     124     190 ..     101     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.6e-07
      AAA_21  2 nvliGpNgsGKSnLLdaldl 21
                ++liG+Ng+GK++LL++l +
  CCE27621.1 36 TLLIGANGAGKTTLLRLLAG 55
                79***************964 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.3e-06
      AAA_21 229 gqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTH 297
                 + ++ ++ +SdG +r   l+  llr     ++l++DE+   L+    + +l +lk++++ +   ++ +TH
  CCE27621.1 124 DTNWRMHAVSDGERRRVQLAMGLLRPW---TVLFLDEITVDLDVLSRADFLAWLKRETEqRECTIVYATH 190
                 6788999******************88...************************666666********** PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   7.9e-07   0.00067      13      37 ..      29      53 ..      23      54 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.9e-07
     DUF3584 13 eldldghtnieGtNaaGKTtLlrLi 37
                 l ++ +t + G+N+aGKTtLlrL+
  CCE27621.1 29 DLPPRSRTLLIGANGAGKTTLLRLL 53
                567899******************7 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     2e-06    0.0017      16      39 ..      27      50 ..      21      58 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2e-06
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                t+++ +++ tll+G++G+GK+Tll
  CCE27621.1 27 TLDLPPRSRTLLIGANGAGKTTLL 50
                567777889**************8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0     0.003       2.6      24      41 ..      33      50 ..      16      54 .. 0.81
   2 !    8.1   0.0    0.0018       1.6     145     192 ..     140     183 ..     112     195 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.003
                SSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnll 41
                +s t ++G+NG+GK+ ll
  CCE27621.1 33 RSRTLLIGANGAGKTTLL 50
                456899*********986 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 145 valaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf 192
                 v     +A+   +p  + +lDei   LD   ++ +   lk+++++   
  CCE27621.1 140 VQ----LAMGLLRPWTVLFLDEITVDLDVLSRADFLAWLKRETEQREC 183
                 44....4566799**************************988877543 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.8e-06     0.005      14      39 ..      27      53 ..      15      55 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.8e-06
      AAA_23 14 eidF.skgltlItGpNGaGKTTildAi 39
                ++d+  +  tl++G NGaGKTT+l+ +
  CCE27621.1 27 TLDLpPRSRTLLIGANGAGKTTLLRLL 53
                5555444569*************9865 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.7e-06    0.0057       2      34 ..      34      66 ..      33      75 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.7e-06
   PduV-EutP  2 kkilliGkvgsGKttLtqalkgeelkYkktqai 34
                ++ lliG+ g+GKttL + l g++l  +kt  i
  CCE27621.1 34 SRTLLIGANGAGKTTLLRLLAGKRLAPSKTIDI 66
                5889*********************99999655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   8.9e-05     0.076       2      67 ..      37     158 ..      36     197 .. 0.58
   2 ?   -2.4   0.0       7.1   6.1e+03      64      78 ..     213     224 ..     212     240 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.9e-05
                 EEESSTTSSHHHHHHHHHHH..HTHEEEEEETTTCSSS........................................................STTHH CS
         AAA   2 llyGppGtGKTllakavake..lgvefleisgsellsk........................................................yvges 42 
                 ll+G  G GKT+l + +a +  + ++ + i g + +++                                                         v+++
  CCE27621.1  37 LLIGANGAGKTTLLRLLAGKrlAPSKTIDICGVDPFQDslegvtylglewvlnpivrndigvvellrsvggdafpdrrdelvslldidtnwrmhAVSDG 135
                 89****************995434555555555555334555555555555555555555555555556666666666666666666666543333333 PP

                 HHHHHHHHHHHHHTSTS.EEEEEETG CS
         AAA  43 ekkirelfkeakekakp.silfiDEi 67 
                 e++  +l        +p ++lf+DEi
  CCE27621.1 136 ERRRVQLA---MGLLRPwTVLFLDEI 158
                 33322222...222245577777776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 7.1
                 EETGGGHHHHHTTCC CS
         AAA  64 iDEidalaksrsgse 78 
                 +DE+d++ ++    +
  CCE27621.1 213 FDEADKILGHI---D 224
                 79999999887...2 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-05     0.012      15      43 ..      24      53 ..      22      55 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
      AAA_15 15 kdveidlsee.ltvliGkNnsGKSsileal 43
                +d+++dl +   t+liG+N++GK+++l++l
  CCE27621.1 24 QDITLDLPPRsRTLLIGANGAGKTTLLRLL 53
                677777777778***************998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.8   5.5e-05     0.047      26     169 ..      35     185 ..      28     186 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.5e-05
      AAA_16  26 lvllsGesGvGKsslvrell.ralekd................ggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala 106
                  +ll+G+ G GK++l+r l+ ++l  +                g+ +l  +++ +       + + + +   ellr ++ +    ++++ r++l + l 
  CCE27621.1  35 RTLLIGANGAGKTTLLRLLAgKRLAPSktidicgvdpfqdsleGVTYLGLEWVLN-------PiVRNDIGVVELLRSVGGD----AFPDRRDELVSLLD 122
                 579****************955666665555555555555553333344444444.......3355555555555555555....55566665555555 PP

      AAA_16 107 avpelagaea....srllellkrllallsrderp.lvlvlDdlq.wadeaslql.laaLlrlleskpllv 169
                     ++        +++ +  +r ++l+    rp +vl+lD++  ++d  s++  la L r++e++ +++
  CCE27621.1 123 ----ID---TnwrmHAVSDGERRRVQLAMGLLRPwTVLFLDEITvDLDVLSRADfLAWLKRETEQRECTI 185
                 ....22...1233455555555555555555556689999977765666555555888888888777766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00014      0.12       8      29 ..      36      57 ..      32     125 .. 0.86
   2 ?   -1.0   0.0       2.4     2e+03      97     117 ..     155     179 ..     127     195 .. 0.60
   3 ?   -0.5   0.0       1.7   1.4e+03      52      70 ..     166     184 ..     151     238 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00014
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                ++++G  G+GKTtllr l+ + 
  CCE27621.1 36 TLLIGANGAGKTTLLRLLAGKR 57
                789*************998776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.4
      AAA_22  97 iDEaqh.lr...seealeeLrslln 117
                 +DE+   l+   +++ l +L++  +
  CCE27621.1 155 LDEITVdLDvlsRADFLAWLKRETE 179
                 4444444433322444444433333 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.7
      AAA_22  52 sskdllrellralglelka 70 
                 s++d+l +l r+++++  +
  CCE27621.1 166 SRADFLAWLKRETEQRECT 184
                 3666666666666655544 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   4.6e-05     0.039       3      21 ..      37      55 ..      35      68 .. 0.85
   2 ?   -2.6   0.0       6.5   5.5e+03      72      90 ..     149     167 ..     117     191 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.6e-05
      AAA_28  3 vitGgestGKTtlleaLaa 21
                 ++G+ ++GKTtll+ La 
  CCE27621.1 37 LLIGANGAGKTTLLRLLAG 55
                79***************94 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.5
      AAA_28  72 ankvlfcDrglldtlaYar 90 
                 +  vlf+D  ++d  + +r
  CCE27621.1 149 PWTVLFLDEITVDLDVLSR 167
                 3444555554444444444 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.4e-05     0.064       4      40 ..      36      72 ..      33      75 .. 0.88
   2 ?   -3.4   0.0       7.3   6.2e+03     105     128 ..     207     230 ..     204     234 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.4e-05
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTS CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvllvaaDtf 40
                +ll+G +GaGKTt l  La +  +  k++ ++ +D f
  CCE27621.1 36 TLLIGANGAGKTTLLRLLAGKRLAPSKTIDICGVDPF 72
                79*****************999998998888888876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.3
                 HHHHHHHHSSSEEEEEEETTBHTH CS
       SRP54 105 lkkikkvvkpdevllvldattgqe 128
                 l ++k++ ++d++l  +d+t+gq+
  CCE27621.1 207 LGTVKEFDEADKILGHIDSTVGQT 230
                 556666667777777788888876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.11      30      54 ..      30      54 ..      22      85 .. 0.87
   2 ?   -2.5   0.0       3.8   3.2e+03     127     134 ..     168     175 ..     122     195 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
      AAA_25 30 lpagelallaGapgtGKttlaldla 54
                lp  + +ll+Ga g+GKttl+  la
  CCE27621.1 30 LPPRSRTLLIGANGAGKTTLLRLLA 54
                68899***************97776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.8
      AAA_25 127 tadvdale 134
                 + ++++l 
  CCE27621.1 168 ADFLAWLK 175
                 22333333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0    0.0001     0.085      89     123 ..      22      57 ..       8      68 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.0001
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpel 123
                  g+++++  l   + ++l+G  G+GK+tL+  l+++ 
   CCE27621.1  22 GVQDITLDLPPrSRTLLIGANGAGKTTLLRLLAGKR 57 
                  6677777777657899****************9874 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00086      0.73       6      33 ..      37      63 ..      33      80 .. 0.81
   2 ?    1.0   0.0      0.46     4e+02      66      90 ..     151     181 ..     120     189 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00086
      AAA_14  6 vitGaRrvGKTtllkqlikellvkkesi 33
                ++ Ga  +GKTtll+ l+ ++l++++ +
  CCE27621.1 37 LLIGANGAGKTTLLRLLAGKRLAPSK-T 63
                789***************99994433.3 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.46
      AAA_14  66 tylflDEiqev......pewekalkslvdeg 90 
                 t+lflDEi          ++  +lk+  +++
  CCE27621.1 151 TVLFLDEITVDldvlsrADFLAWLKRETEQR 181
                 789*****87655566566666666666555 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00014      0.12      20      38 ..      37      55 ..      24      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
      AAA_13 20 liYGwNGaGKTtLSrllrs 38
                l+ G+NGaGKTtL rll+ 
  CCE27621.1 37 LLIGANGAGKTTLLRLLAG 55
                677*************997 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00031      0.26      15      40 ..      34      59 ..      26      76 .. 0.88
   2 ?   -3.7   0.0       8.1   6.9e+03      94     113 ..     107     126 ..      92     133 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00031
                EEEEEEESTTSSHHHHHHHHHHSSCE CS
         Arf 15 lrilllGLDnaGKtTilkklkleelv 40
                 r ll+G  +aGKtT+l  l  ++l+
  CCE27621.1 34 SRTLLIGANGAGKTTLLRLLAGKRLA 59
                589**************999988765 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.1
                 CTTHHHHHHHHHHHCTSGCC CS
         Arf  94 reRleeakeeLkalleeeel 113
                  + + + ++eL +ll+ +++
  CCE27621.1 107 GDAFPDRRDELVSLLDIDTN 126
                 44455555666666655544 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00028      0.24       2      39 ..      36      74 ..      35      86 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00028
                EEEESSTTSSHHHHHHCHCT-CCC-E.EETTTTEEEEEE CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfsek.ekstigvdfltk 39
                 +l+G +g+GKt+ll+ +  ++  ++ +  ++gvd ++ 
  CCE27621.1 36 TLLIGANGAGKTTLLRLLAGKRLAPSkTIDICGVDPFQD 74
                589**************9999987651456777776655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00035       0.3       3      22 ..      37      56 ..      36      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00035
      AAA_33  3 llvGlpGsGKstlaerllkk 22
                ll+G++G+GK+tl++ l+ k
  CCE27621.1 37 LLIGANGAGKTTLLRLLAGK 56
                799***********998865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00036       0.3       3      21 ..      36      54 ..      34      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00036
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                 +l G++G GKTtLl+ la
  CCE27621.1 36 TLLIGANGAGKTTLLRLLA 54
                6899***********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2128.19
//
Query:       CCE27622.1  [L=719]
Description: uncharacterized protein CPUR_01096 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-34  119.2   0.0    1.6e-33  116.2   0.0    2.0  1  CENP-I    Mis6


Domain annotation for each model (and alignments):
>> CENP-I  Mis6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   9.1e-38   1.6e-33      86     505 ..      32     434 ..      13     443 .. 0.84

  Alignments for each domain:
  == domain 1  score: 116.2 bits;  conditional E-value: 9.1e-38
      CENP-I  86 lktvenvalkkGlapeaidillnvalsGkfadavn.trllkclipatvisedsvvkavswlcvg..kcsgnikvlflrwliamfdfidhkeqvnslyGf 181
                 + ++ ++a+++Gl p a+d l++++ + ++ d  + + +++ l pa  +s d v++ vs l  g  k s + +  +l+wl+ ++  +d    +   y +
  CCE27622.1  32 VASLSSLAYENGLLPPALDRLIDLVTTPNYLDQASlAGIVRNLYPAERVSPDVVLRVVSALGHGtlKASLSLQAALLKWLVMVYHVLDGPVVLAHAYAV 130
                 667889*****************999988877665278***********************8764488999999************************* PP

      CENP-I 182 ffaflqddklcpyvchllylltrkenvkpfrvrklldlqakmGmqshlqallslyklfapelvsislpvkkkiyfknseglwkaalaavrqrnqgtspv 280
                 +f  l+  ++ p + hll l+tr+  v+pfr+++ll+l  + G  + l  ll ++k + pe++       k   fk+++ lw++ l  ++   +  ++ 
  CCE27622.1 131 LFNLLDTAAVRPQLAHLLALITRRRHVRPFRIQALLNLSRQTGNDPSLVGLLRVFKDYYPEIIVGEAVRGKASAFKHPDLLWRSRLDEIQDAHRQRAA- 228
                 *************************************************************9977776777789************999876665554. PP

      CENP-I 281 slklllGtakvrsrkrkwntqlvipasssnnlnkevgekelslvdllstdesfpveqlqtfpqllenihclelpsqmgsvlknslllhylncvkdesvl 379
                  ++   G+ +   ++r  n         ++  nk+v     ++ ++  t+es+  e+++  + ++  + +lelp q+ +vl ++ll + l    +   +
  CCE27622.1 229 -ERRATGPQSGFRVNRPVNR--------AQR-NKTV----PTVLTSHATEESVTLEEVEDVSSFVSKMDKLELPNQLVAVLADPLLQKLLILRPNPESY 313
                 .4556677777777765443........322.3322....23567788999**************************************999999999* PP

      CENP-I 380 lrlyywlsqtlqeecvwykvddseeeeefkefleliiraecf..lqeGfssceeflykslplwdGlscrsqilklvswiplssfseiksllldplaqlf 476
                  r++ wls ++qe  +    d+ +  e ++   e +ir++    l  Gf      + + + +w G + r  +++++ ++pl +f e+   +++pl    
  CCE27622.1 314 QRISNWLSAVFQEVMTG-DSDEATLWEVLEVAREFVIRTRTIppLLLGF------FSRFFEIWGGEGRRETVFDILGFVPLHNFEELHRHIFKPLEAAV 405
                 ************86554.4455555556666677888887753345555......557789**********************************9888 PP

      CENP-I 477 ftssiyfkcsvleslkellqnwllslstd 505
                    +   +  +l+   +ll+ w  +l+ d
  CCE27622.1 406 QDYAPASQLGLLKMYTHLLRHWTTILQSD 434
                 77777778888888888999998777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5531.86
//
Query:       CCE27623.1  [L=1605]
Description: related to tuberin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-144  481.9   3.8   2.3e-144  481.9   3.8    2.1  2  DUF3384   Domain of unknown function (DUF3384)
    3.9e-54  183.0   0.0    7.4e-54  182.1   0.0    1.5  1  Rap_GAP   Rap/ran-GAP
    3.7e-34  118.4   7.7    3.4e-31  108.6   0.0    3.8  4  Tuberin   Tuberin
  ------ inclusion threshold ------
      0.058   13.5   0.0       0.15   12.2   0.0    1.6  1  DUF5576   Family of unknown function (DUF5576)


Domain annotation for each model (and alignments):
>> DUF3384  Domain of unknown function (DUF3384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  481.9   3.8  5.1e-148  2.3e-144       2     478 ..      79     547 ..      78     549 .. 0.96
   2 ?   -1.2   0.0      0.16   7.2e+02     341     419 ..     851     964 ..     843    1011 .. 0.68

  Alignments for each domain:
  == domain 1  score: 481.9 bits;  conditional E-value: 5.1e-148
                 HHHHHHHHHHHHHHHH-TTS--HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHC.T-TT--HHHHHHHHHHHHS.....S--GGGHHHHHHHHHHHCTTT CS
     DUF3384   2 rqRikaaraLaaaverysldsvaevWrlakdLltaeqpqelRiaglnLltacvkkdqelsaieRalfFrlilsrkndesseiddlplqLeaLevLTkdG 100
                 ++Ri+ +++L++a+++y+ld+++e+W +akdL++++++ ++R ag+ Llt+c+ k+++++++eR+++F+++++     s++++dl+lqL+aL+ LT++G
  CCE27623.1  79 SERISGVKTLKNAITEYPLDPILEIWCAAKDLINPSNSPSTRAAGWDLLTECA-KHSSSTDLERKEYFQTLSA-----SAHPEDLHLQLAALVRLTNHG 171
                 79***************************************************.*******************.....678899*************** PP

                 T--TT-TTTHHHHHHHHHHHHHH.....H.H..H---------------HHHHHHHHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCS-S-HHHHH CS
     DUF3384 101 rdiegfeyeilplLtrwldeala.....s.kdnadeaakqqtkaisqlsseernlqqllqlltdilkfnfarldeseveslirsaleicigtsnaddlr 193
                 r + gf+y++lplLt wld+a++     + ++n  ++a+ +t+ +++   e++ ++ql+++l d++kf+f+++de +v  li+ +l+ic++ts++ddlr
  CCE27623.1 172 RVLAGFDYDLLPLLTIWLDDAYNaaraaRrNTNSVRSASGSTRGNTAAAVEDKYFAQLFSFLLDVIKFSFNTADEPAVTDLIDTVLTICMNTSQEDDLR 270
                 ***********************999863599999**************************************************************** PP

                 HHHHHHHHHHHHS---HHHHHHHHHHHHHHHHH-GG....GHHHHHHHHHHHHCSTCHHHHHHHHHHHHHT---SHHHHHHHHHHHHHHHHHHHHHTT- CS
     DUF3384 194 sclklldaiiryghlPsasldvvikvLCsiycridsndddlqkevwrilsnllkshvgnaairslldiLtdpseakaaqkedpavlrGAvevlrlllls 292
                 sc++ ldai+++g +P+++l+++++vL+siy++++     lqk++wr++  l+ sh+g+a++r++ld+L++ ++ +++++++ +++rG + vl++l+ +
  CCE27623.1 271 SCINALDAIVTFGFIPQSKLKDCVQVLSSIYSMVQG----LQKNSWRTIATLCTSHNGQATVRIMLDVLRNLQA-GVNDQDSSREIRGSLAVLQKLMSK 364
                 ************************************....*******************************998.***********************4 PP

                 -T..T--......---HHHHHHHHHHHHC.S--HHHHHHHHHHHHHHH--------GGGTTS--HHHHHHHHHCCTTTEE------------GE-HHHH CS
     DUF3384 293 sk..gqpedalapslslalllpalraalk.rqsdvldlevlqlisdlLpsasvsrdkllaesdWdalldlliecsrrledlkeedkasssseeekssla 388
                     g+p       +++all+++l + l+ ++s ++ + +lqli++l++++++++++l+ ++dW++ ld++++c r+++d + ++++ss +e++  ++ 
  CCE27623.1 365 PAekGYP------AVPYALLVDGLSNTLRnTKSLRVYVSILQLINSLFDDGEGRIHRLMIDEDWSTALDVAADCYRQISDTS-DSQQSSHDESQAANVH 456
                 3333777......***************9899************************************************97.5566666666****** PP

                 HHHHHHHHHHHHHHH.HGGGSTTHHHHHHHHHHHH-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3384 389 aelssllssleslle.sgedsgqkekliafflevssalpdstaeavLkyldkerlcspsnedWlenlkklldsFfknrkrssevRllalkv 478
                 +el +l+++l+ +++ ++ d+++++++i+ff+ v++ lpd+ta++vL+y++++r+csps+ +W+enl ++l++Ff+nr+rss++Rl+al++
  CCE27623.1 457 RELVQLIQRLDAVIKeKSGDFVPRQTIIDFFTMVHPLLPDETARTVLDYFQEFRCCSPSDLRWEENLDLVLEAFFSNRSRSSDTRLRALRA 547
                 ***************99***********************************************************************986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.16
                 --.............---GGGTTS--HHH....HHHHHHCCTTTEE------------G.......................E-HHHHHHHHHHHHHHH CS
     DUF3384 341 sv.............srdkllaesdWdal....ldlliecsrrledlkeedkassssee.......................eksslaaelssllssle 399
                 +v             ++ ++l++sdW+      ++l ++ s+++  + +      + ++                       ++ ++a +l+++l+ + 
  CCE27623.1 851 EVhrtsvldvsiwldAVLEILQDSDWEVYsftlVHLPAQLSNHAIFSAAIP----QIQTlrhtvceqirtnsfleppfhaglRRADVAICLFHSLTMIL 945
                 554444455555555567788888888775555444444444444333222....22224445677777777999999999999999999999999999 PP

                 HHHHHGGGSTTHHHHHHHHH CS
     DUF3384 400 sllesgedsgqkekliaffl 419
                 s  e +   g  +++++ f 
  CCE27623.1 946 SYHE-HFGKGDEDEIVKTFI 964
                 9998.888888888888775 PP

>> Rap_GAP  Rap/ran-GAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.1   0.0   1.7e-57   7.4e-54       1     185 [.    1303    1505 ..    1303    1506 .. 0.93

  Alignments for each domain:
  == domain 1  score: 182.1 bits;  conditional E-value: 1.7e-57
     Rap_GAP    1 ilsNeevSkrfeeFlelLGekvelkgfkgYsggLdtkknttGehsvytkdrnleimFhVstllpt.kesdkqqlerkrhigndivvIvFnesgekef 96  
                  il+N  +S++++eFl+ LG++ +lkg++++++gLd++ +t+G+++++++dr +ei+FhV+t +pt  e+d+q++ +krhignd+v+I+Fn+sg k+f
  CCE27623.1 1303 ILANVCGSSDYTEFLNNLGTLTKLKGATFNTQGLDREYDTDGQYTFCWRDRVTEIVFHVTTQMPTnLERDPQCTLKKRHIGNDFVNIIFNDSG-KPF 1398
                  7899977******************************999************************96799**********************99.99* PP

     Rap_GAP   97 dpsliksqfnhvfivvqpl.............ekekskeelyrvsvvskksvppfgPllpeekivskkslaelvrflltkainaeraal........ 172 
                  + ++++sqfn+v+iv++p+                 + + +yrv+v sk+++p+++P+ +e+k++s ++l+ ++r +   a+na+ +++        
  CCE27623.1 1399 RFDTFPSQFNYVNIVITPAsrasfiatrtttsFGGLRGQPFYRVQVLSKPGFPEISPA-SETKMISLNALPGFIRAV---ALNASVFCHvwnaregg 1491
                  *999*************5466777777766553367889*******************.9*****************...***************99 PP

     Rap_GAP  173 .kassfrerlertr 185 
                   ++ss++ rl++++
  CCE27623.1 1492 eHISSWTGRLREIK 1505
                  55999999999987 PP

>> Tuberin  Tuberin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.76   3.4e+03     136     164 ..     569     597 ..     567     600 .. 0.85
   2 !    3.4   0.1    0.0078        35      28     113 ..     675     753 ..     651     778 .. 0.63
   3 !  108.6   0.0   7.7e-35   3.4e-31      90     326 ..     819    1050 ..     805    1055 .. 0.83
   4 !    8.9   0.2   0.00016      0.72     332     351 ..    1092    1111 ..    1088    1112 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.76
     Tuberin 136 eafkvilkclkeekdwkvLklvLkelpkl 164
                 ++ k il+ + ee d  vL  v++ + ++
  CCE27623.1 569 KLAKSILQNIVEEGDVLVLDAVMSLMVSV 597
                 67789*****************9987665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0078
     Tuberin  28 havkvyklLvehlelhYerpkkfeevvassirlkifdflLklradssyrlglpdkedkvvrfspyllvdskeeeale..kksqlelse 113
                  +vk +++Lv+  +++  +          + rl+ +++l++lrad  +r+ ++d  d++   +  +  d ++ +++    + +++ls 
  CCE27623.1 675 KSVKLFNVLVDIAKQNQGE---------LDARLTAMKLLFRLRADWAHRVFVTDDLDNTYLATAMCRTDASYAKKQAgdAAHAFRLSR 753
                 4445555555544443333.........578*******************99999877766666666666665555543333333333 PP

  == domain 3  score: 108.6 bits;  conditional E-value: 7.7e-35
     Tuberin   90 spyllvdskeeeale.kksqlelseestseaestqtpsskvttlsikeafkvilkclkeekdwkvLklvLkelpklLqnkaLilsksgndidsLasa 185 
                  s++ +++ ++ ++   k++  +  e++      ++ +  ++  l+++  + ++l+ l +++dw+v    L +lp  L n a++ +    +i++L ++
  CCE27623.1  819 SHNWTLEASHANDNDgKNEDVNDDEDEIL----HSDEVHRTSVLDVSIWLDAVLEIL-QDSDWEVYSFTLVHLPAQLSNHAIFSA-AIPQIQTLRHT 909 
                  44444444432222212222222222222....24567788899999999****998.689*******************98876.5799******* PP

     Tuberin  186 LcklvsdkklsekLkstpekfsrtdlqalvlpvLaalvsYhesLdkstqqelvkclesglk..skcakqcvvalticllemrdvlikllpevllkLs 280 
                   c+ +  +++ e     +++++r+d+  + +  L+ + sYhe++ k  + e+vk++  g+   +++ak c+ al+ic+ e++  + k l ++l +++
  CCE27623.1  910 VCEQIRTNSFLE--PPFHAGLRRADVAICLFHSLTMILSYHEHFGKGDEDEIVKTFILGIGtwERTAKYCIHALSICCHELPLSTSKSLIQMLNQMA 1004
                  *****9999973..567788**********************************98766651169******************************** PP

     Tuberin  281 kisatvtlAipvLefLstLvrlpklysnfveeqymsvfaillpytn 326 
                        ++ + +LefL  L+rl ++y nf e++y+ vfai++ y +
  CCE27623.1 1005 ASITQPHVSVHILEFLACLSRLHHVYVNFREDEYRIVFAICFRYLE 1050
                  *9999*************************************9976 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00016
     Tuberin  332 hYiVslahhviavWFlkcrl 351 
                  +Y+ +la+hvi+ WFl  +l
  CCE27623.1 1092 QYVHALAYHVILFWFLALKL 1111
                  79*************98776 PP

>> DUF5576  Family of unknown function (DUF5576)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.3e-05      0.15      60     123 ..     966    1032 ..     959    1041 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.3e-05
     DUF5576   60 grgtrgskpsctvpalsatsqllqlgrlnsdlqfvrqrakks...vsspsllqfwcclsrlsfhaln 123 
                  g gt+       + als   + l l + +s +q+++q a        s  +l+f +clsrl    +n
  CCE27623.1  966 GIGTWERTAKYCIHALSICCHELPLSTSKSLIQMLNQMAASItqpHVSVHILEFLACLSRLHHVYVN 1032
                  7899*9999999*************************98643111346679**********876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.47
# Mc/sec: 10201.94
//
Query:       CCE27624.1  [L=959]
Description: probable importin-alpha export receptor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.1e-163  543.0   0.5   2.4e-162  540.4   0.1    2.1  2  CAS_CSE1  CAS/CSE protein, C-terminus
   1.2e-150  501.5   3.2     2e-150  500.7   3.2    1.4  1  Cse1      Cse1
    1.4e-12   47.4   0.1    7.2e-12   45.1   0.1    2.4  1  IBN_N     Importin-beta N-terminal domain
     0.0018   16.7   0.3       0.13   10.5   0.0    2.7  3  DRIM      Down-regulated in metastasis
  ------ inclusion threshold ------
      0.096   12.3   0.8         22    4.5   0.0    3.2  3  MMS19_N   Dos2-interacting transcription regulator of RNA-Pol


Domain annotation for each model (and alignments):
>> CAS_CSE1  CAS/CSE protein, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.052   1.8e+02     239     311 ..     284     347 ..     268     355 .. 0.74
   2 !  540.4   0.1  6.8e-166  2.4e-162       1     443 []     518     957 ..     518     957 .. 1.00

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.052
    CAS_CSE1 239 vlekylktilsllltrlqnsktekfkkrlvvflslvsakddkglgadaliqlidkvQanvftpllekvilpel 311
                  +++++++ ++ll     ++k ++++++++ fl+ v++ +      +++   ++   +nv+ +++ekvilp++
  CCE27624.1 284 YVQPFITSAWNLLTAVGTQTKYDNLVSKCLHFLTAVASTS----DHANI---FN--DENVLSQIVEKVILPNV 347
                 5788888889988888888899999999998888887777....22222...22..36778888888888876 PP

  == domain 2  score: 540.4 bits;  conditional E-value: 6.8e-166
    CAS_CSE1   1 erlLtlrdeqgqpiitkediaPlakdllenlFkllekdesaeklqENeylmkcimRvlivikeavlpvadvvlqkLieilevvskNPsnPrFnyYlFEa 99 
                 er+L+l+d++g+p+++++di+P+akdll++lFkl+e ++ a+klqENe+lm+c+mR+livik+++ ++ d+ l++Li i++v+++NPsnPrF+yY+FEa
  CCE27624.1 518 ERVLFLADDTGTPMFPRADIEPFAKDLLDHLFKLIERESNAAKLQENEFLMRCVMRILIVIKDGASNLLDSALTHLILITNVMKHNPSNPRFYYYHFEA 616
                 8************************************************************************************************** PP

    CAS_CSE1 100 lgalvrlaakadpaavskleeaLfpvfqaiLqedvtEFvPYvfQllaaLleanksetlpesykaliellLsPalWerkgNvpaLvrLlsaiikkasqei 198
                 +galvr++a++++a    + ++L+++f+ +  edvtEFvPYvfQ++a+++e+++ ++++e+  +l+ +lL+  lWe++gNvpa vrLlsa+i+k++++i
  CCE27624.1 617 VGALVRYCARNNAA---IFSQKLWEPFKLVVVEDVTEFVPYVFQIFAQIIESSPADSVSENELSLLGPLLAAPLWETRGNVPACVRLLSAVIPKTAKHI 712
                 *********99999...99******************************************************************************** PP

    CAS_CSE1 199 vaenklepvLgiFqkLiaskandeegFdlLesvieslpaevlekylktilsllltrlqnsktekfkkrlvvflslvsakddkglgadaliqlidkvQan 297
                 + +n+le+vLgiFqkL+ask+ + ++Fd+L++vi+s+++++leky+ ti++ll+t+lq s++++fk r+++f++lvsa+ + g+gad++i   d++ a 
  CCE27624.1 713 QDNNQLEAVLGIFQKLLASKKSEAQAFDILDAVINSFAPAALEKYFGTIIQLLYTKLQGSPADSFKIRFARFFHLVSARLEIGYGADFFIAKSDQLDAR 811
                 ********************************************************************************99***************** PP

    CAS_CSE1 298 vftpllekvilpelqklarpldrKlavvsltkllaesealldrykklwaklleallkllekpeeeaaadedeiieeadvedlgfgvaftkLntakkkee 396
                  f +++  ++l+e++kla+p+drK+avvsltk+l++s+ +  +++k+wa+ ++ ll+ll +p+ +aa + deii ea v+d+gfg+++t+Lnt+k+ ++
  CCE27624.1 812 AFAQVYPPFVLAETEKLAKPVDRKIAVVSLTKTLCDSQVFGGKFMKGWANSCRILLSLLANPPVVAAGAGDEIITEASVDDIGFGMTYTALNTCKPLAR 910
                 *************************************************************************************************** PP

    CAS_CSE1 397 DplpeikdvkqfvaqslkeaskahngriskivserleaeakqvLaey 443
                 D++ ei++v q+v +++ +a+++hng i+ ++s+rl++e++ ++ +y
  CCE27624.1 911 DDFSEIQNVAQWVKEYMVAANQRHNGAIAGFISQRLPQEQQDAIMKY 957
                 ********************************************998 PP

>> Cse1  Cse1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.7   3.2  5.6e-154    2e-150       1     370 []     151     517 ..     151     517 .. 0.99

  Alignments for each domain:
  == domain 1  score: 500.7 bits;  conditional E-value: 5.6e-154
                 HHGGGTTS---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG- CS
        Cse1   1 ifkrwrplfrsdeLfleiklvldkfaepllellkkvdelieakkedkaalkvlfevllllvklfydlnsqdlPeffEdnlkelmealhkylsldnplle 99 
                 if rwrpl +s+eL++ei++v+++f++p+l+l+ ++d+ i ++++dk+alk +fe+l l +k+ +d++s+dlP++fE+nl ++ e lhkyl+++np+l 
  CCE27624.1 151 IFNRWRPLNQSNELYIEINHVVNTFGQPFLQLFANTDSKIAEHANDKDALKGWFETLDLQIKILHDMSSHDLPPIFEENLGSISEFLHKYLTYSNPILA 249
                 8************************************************************************************************** PP

                 TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS CS
        Cse1 100 tdddeeasvleklkasicelvqlyvekyeeefepyleefveavWnllvsvskqtkyDilvskalkFltsvakvkkyaelFeneevlkeiiekvvlpnvt 198
                 tddd+eas+++++ka+icel++ly+ ky+e+f++y++ f+++ Wnll+ v++qtkyD lvsk+l+Flt+va+++ +a++F++e+vl++i+ekv+lpnv 
  CCE27624.1 250 TDDDDEASIVDTTKADICELLNLYTIKYDEDFSKYVQPFITSAWNLLTAVGTQTKYDNLVSKCLHFLTAVASTSDHANIFNDENVLSQIVEKVILPNVA 348
                 *************************************************************************************************** PP

                 --HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT.B-S-B CS
        Cse1 199 lResDeElFEdepieyirrDlEGsdvdtRrraatdllkeLkekfeakvtevvleyvekllekykenpsanWkkkdlaiyLvtslavkgevtks.Gvtst 296
                 lResD+E+FEdepieyirrDlEGsd d+Rrr++td+l++L+e+fe+ vt+ v++y++++l     + +++Wk+kd+a+yL+ s+a+kg+vt++ Gv+++
  CCE27624.1 349 LRESDIEMFEDEPIEYIRRDLEGSDGDSRRRSSTDFLRKLQERFETPVTKSVSKYIQHYLV----QGKTDWKAKDTAVYLFLSIAAKGAVTQVqGVKTV 443
                 ***********************************************************99....59***********************9988***** PP

                 -TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH CS
        Cse1 297 nelvdvvdFfakeiapdLeadvneepilkvdaiKyivtFRsqlskeqlievlpllikfLksesvvvytYaaiai 370
                 n lvdvv+Ff++++a+dL+  +   pi kv+aiKy++tFRsqlsk+q++ +++ li++L+s ++vvytYaaia+
  CCE27624.1 444 NPLVDVVEFFEQHVAQDLMGSDGVAPISKVNAIKYLYTFRSQLSKDQWTIAIKPLIQNLNSPTYVVYTYAAIAV 517
                 *******************999**************************************************97 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.1     2e-15   7.2e-12       1      74 []      24      97 ..      24      97 .. 0.98

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 2e-15
                HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnllgs 74
                Ae++Lk+ ++ p + ++ll i+++++++ ++R++Aal +kn+i+ ++ dee + +++++e + I+++l+ l++s
  CCE27624.1 24 AENALKEEATKPRYSLTLLTIVSSDSLPANTRLAAALAFKNFIRVNYVDEEGNYKISQDEVQIIKEQLIGLMIS 97
                8********************************************************************99975 PP

>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.26   9.4e+02     410     613 ..     311     345 ..     249     350 .. 0.62
   2 !    3.1   0.1    0.0065        23     353     437 ..     517     591 ..     498     608 .. 0.72
   3 !   10.5   0.0   3.6e-05      0.13     378     486 ..     648     751 ..     596     767 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.26
        DRIM 410 releiLsrlaplvedseqassLldlllplLrkpsrrvsektkvelLkilenllrlydedevdlpekllktlsslfsrlkdreaRklLcevlkalakkdp 508
                 ++l                                                                                                
  CCE27624.1 311 KCL------------------------------------------------------------------------------------------------ 313
                 333................................................................................................ PP

        DRIM 509 eleevadllsdLNayskrrldepDfdrRlsAFkkineekyksltleqwlpllhnclffirdeeelsirsnAsellkrfieaaaskseeeps...klele 604
                                                                                             +f++a+as s++ +    +  l 
  CCE27624.1 314 ----------------------------------------------------------------------------HFLTAVASTSDHANIfndENVLS 336
                 ............................................................................44444444444443344322344 PP

        DRIM 605 ellkdillp 613
                 +++++++lp
  CCE27624.1 337 QIVEKVILP 345
                 555555555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0065
        DRIM 353 venllkladeeeeeeedeeeigselLlphvsslLeylsalleksaaskkdkskellereleiLsrlaplvedseqassLldlllp 437
                 ve++l+lad+  +         ++ ++p++++lL++l +l+e++++      ++l e e+ + + +  l+  ++ as+Lld+ l 
  CCE27624.1 517 VERVLFLADDTGT-----PMFPRADIEPFAKDLLDHLFKLIERESN-----AAKLQENEFLMRCVMRILIVIKDGASNLLDSALT 591
                 5666666665444.....445566789***************9974.....4566666666666666667777777777766554 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 3.6e-05
        DRIM 378 LlphvsslLeylsalleksaaskkdkskellereleiLsrl..aplvedseqassLldlllplLrkpsrrvsektk.velLkilenllrlydedevdlp 473
                 ++ +v+ + + +++++e+s      + + ++e el++L  l  apl e+  ++ + ++ll  ++ k ++ ++++ +   +L i+++ll + + +e  ++
  CCE27624.1 648 VTEFVPYVFQIFAQIIESS------PADSVSENELSLLGPLlaAPLWETRGNVPACVRLLSAVIPKTAKHIQDNNQlEAVLGIFQKLLASKK-SE-AQA 738
                 6778888999999999888......7889999999999988889999999999999999999999999999999888889999999999932.22.357 PP

        DRIM 474 ekllktlsslfsr 486
                  ++l+++++ f+ 
  CCE27624.1 739 FDILDAVINSFAP 751
                 8888888888765 PP

>> MMS19_N  Dos2-interacting transcription regulator of RNA-Pol-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0062        22      11      95 ..     373     457 ..     366     461 .. 0.89
   2 ?   -2.7   0.0      0.97   3.5e+03     205     236 ..     540     571 ..     538     574 .. 0.89
   3 ?    4.4   0.0    0.0065        23      22     242 ..     658     752 ..     654     770 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0062
     MMS19_N  11 eddkvRakavslLaevlsrlpkkklseeevevLvqFflsrledfavlkealkgllaLlrlkkfsaeeavevlralfeevh.vqsla 95 
                 + d++R+ ++ +L ++ +r+++ +++++  + + +++++  +d+++  +a+  +l+++ + ++++++ v+ ++ l++ v+ +++++
  CCE27624.1 373 DGDSRRRSSTDFLRKLQERFET-PVTKSVSKYIQHYLVQGKTDWKAKDTAVYLFLSIAAKGAVTQVQGVKTVNPLVDVVEfFEQHV 457
                 567899999***********98.9*******************************************9999999999888555554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.97
     MMS19_N 205 faplalplllekLdstsvsakldaLqtlaacv 236
                 fa+++l++l++ ++ +s  akl+  + l+ cv
  CCE27624.1 540 FAKDLLDHLFKLIERESNAAKLQENEFLMRCV 571
                 99999999999999999999999999999998 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0065
     MMS19_N  22 lLaevlsrlpkkklseeevevLvqFflsrle.dfavlkealkgllaLl..rlkkfsaeeavevlralfeevhvqslaqadRklvyelldallekhreal 117
                 ++a++++++p++++se+e+++L   ++  l      ++++++ l+a++  ++k++++++  e +  +f+++  +++++a   +++++lda+++++    
  CCE27624.1 658 IFAQIIESSPADSVSENELSLLGPLLAAPLWeTRGNVPACVRLLSAVIpkTAKHIQDNNQLEAVLGIFQKLLASKKSEA---QAFDILDAVINSFA--- 750
                 5677777777777777777777777777777344456777777777775555666666666666677766665555554...45666666665542... PP

     MMS19_N 118 kelgedflegfvelvdgEkDPrnLllvfellkvllrefdlsalaeelFdvvscYFPitFrpppndpygitredLkaaLreclaasplfaplalplllek 216
                                                                                                                    
  CCE27624.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

     MMS19_N 217 LdstsvsakldaLqtlaacveaygae 242
                                         ++
  CCE27624.1 751 ------------------------PA 752
                 ........................22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (959 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 6224.60
//
Query:       CCE27625.1  [L=756]
Description: uncharacterized protein CPUR_01099 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.2    7.1   5.7         43    2.9   6.0    2.2  2  XRN_M     Xrn1 helical domain


Domain annotation for each model (and alignments):
>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0    0.0078   1.4e+02     313     420 ..      44     151 ..      42     165 .. 0.73
   2 ?    2.9   6.0    0.0024        43      61     140 ..     355     433 ..     348     456 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.0078
       XRN_M 313 krLlealakleeeLteeEkkRNtrksdvlfvsktskkaeallaklsekekdeeklkideklseglngslalae.eavvekklssplkelediednkvlc 410
                 ++L  ++ +l +++ ++ ++RN + + +l v kt++  e +   l ++ +d + ++++++    +  +l+++  +++ ++  ss + ++ + +d  v +
  CCE27625.1  44 QALSRTTSSLVNSVISKSVNRNDTDEVYLSVYKTKEDWEPIQRWLLSDVSDCQVQQVSNRKQGPVLPTLVVTIcDNQRKR-RSSRAAGFMSSKDSGVKT 141
                 678889999999999***********************977777777777777777776655444444444431333333.356666888888888888 PP

       XRN_M 411 vkyelPkkdd 420
                   +++P++d+
  CCE27625.1 142 LWFRTPPDDH 151
                 8888888844 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.0024
       XRN_M  61 kldrveklvslvgkveekifrkrkeredrkekklakeeeaskedaaneeaavaeeklseskvaksaeaeaeaeaeaeaea 140
                 kl+ + ++ +l+ ++++k  r+r+++e++ e++ +++ ++s++++++++++++ + +++++ + ++  + e+e+e +  +
  CCE27625.1 355 KLSSIARFDALMRESDDKEQRRRQRQEQKDEQSHHQK-HRSHQSQQQATRKQDRNLAVKTSFDDDNGPRREKESESDSDE 433
                 6778888888888888877777777666665555544.333333444444444444555555555555555554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1888  (0.105304); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 4689.95
//
Query:       CCE27626.1  [L=619]
Description: uncharacterized protein CPUR_01100 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.9e-15   54.8  10.3    5.1e-06   27.1   0.2    6.0  6  WD40         WD domain, G-beta repeat
    4.5e-11   42.9   2.0    0.00015   21.9   0.0    5.2  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    0.00022   21.1   0.1    0.00076   19.3   0.0    1.9  2  Gmad1        Lipoprotein LpqB beta-propeller domain
  ------ inclusion threshold ------
      0.057   12.5   0.0       0.52    9.3   0.0    2.5  3  DUF1513      Protein of unknown function (DUF1513)
       0.12   12.4   0.0          9    6.4   0.0    2.6  2  WD40_3       WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         5   1.8e+04       6      16 ..      67      79 ..      66      81 .. 0.66
   2 !    9.8   0.0   0.00044       1.6      13      37 ..     308     332 ..     297     333 .. 0.88
   3 !   27.1   0.2   1.4e-09   5.1e-06       5      38 .]     346     380 ..     343     380 .. 0.92
   4 ?    1.8   0.0      0.14   5.2e+02      10      29 ..     437     455 ..     431     463 .. 0.79
   5 !   11.3   0.3   0.00015      0.53       3      37 ..     511     549 ..     509     550 .. 0.85
   6 !    6.2   0.1    0.0057        20       7      37 ..     560     592 ..     554     593 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5
                EEESSSS..EEEE CS
        WD40  6 tltGHss..vtsl 16
                t+ GH+   vt +
  CCE27626.1 67 TYFGHDReeVTRI 79
                5669932569988 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00044
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                 v+ ++fs+dg+ las++  + v iW
  CCE27626.1 308 VWEVQFSHDGSRLASCGSTNVVSIW 332
                 999***********98769999999 PP

  == domain 3  score: 27.1 bits;  conditional E-value: 1.4e-09
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ + H s+v s+a+sp+ ++l+++s+D+  riWd
  CCE27626.1 346 HVQKDHeSGVASIAWSPNDQMLVTCSRDNYARIWD 380
                 666789999*************************9 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.14
                 SSSEEEEEEETTSSEEEEEE CS
        WD40  10 HssvtslafspdgawlasGs 29 
                 H  v +l+ s dg+wl++++
  CCE27626.1 437 H-RVQALSASLDGRWLVAAD 455
                 4.588899999*****9653 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.00015
                 EEEEEESS..SS..EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH..ss..vtslafspdgawlasGsdDgtvriW 37 
                 +++++ GH  +   ++s     + ++++sGs+Dg   iW
  CCE27626.1 511 TIHKFHGHkmDRfiIRSTFGGANESFVVSGSEDGCMFIW 549
                 689999**753387798889999999************* PP

  == domain 6  score: 6.2 bits;  conditional E-value: 0.0057
                 EESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS
        WD40   7 ltGH.ssvtslafspdgaw.lasGsdDgtvriW 37 
                 l+GH +  ++  ++p  +  +as+sd g ++iW
  CCE27626.1 560 LSGHtKRCNGATWNPADPCmIASCSDEGPIKIW 592
                 89**888****9888888855799999999999 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0063        23      29      68 ..     297     335 ..     285     349 .. 0.82
   2 !   21.9   0.0   4.3e-08   0.00015      32      90 ..     347     403 ..     338     405 .. 0.87
   3 ?    3.9   0.0     0.018        64      36      79 ..     434     477 ..     417     486 .. 0.83
   4 !    6.8   0.0    0.0023       8.3      42      80 ..     481     519 ..     472     527 .. 0.88
   5 ?   -0.4   0.0       0.4   1.4e+03      37      64 ..     563     591 ..     531     598 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0063
  ANAPC4_WD40  29 vwtleedkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  v +l  d+  +ev ++++++dg+ La   s + v++ + +
   CCE27626.1 297 VLEL-PDAGMGEVWEVQFSHDGSRLASCGSTNVVSIWETQ 335
                  4455.6778899**********************998765 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 4.3e-08
  ANAPC4_WD40  32 leedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  + +++++s v s+aW+p++++L+    d+  r+ d  +g ++++l+  +e  v+   W+
   CCE27626.1 347 V-QKDHESGVASIAWSPNDQMLVTCSRDNYARIWDTVTGSLIKKLPRFDEP-VSACVWA 403
                  4.6789999***********************************9988774.7777775 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.018
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  +++++v++L+ + dg+ L+ a + +++ +++ ++ ++  +l+ +
   CCE27626.1 434 NKKHRVQALSASLDGRWLVAADNMTTIYVYNGQTRELEYELDLG 477
                  78999*****************9999999998888877666665 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0023
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  +sL+ ++d + L v  +d+e +l+d  + +++h+++ ++
   CCE27626.1 481 TSLSISQDCRSLLVNKADSEAQLIDLVTRTTIHKFHGHK 519
                  789999999*************************98776 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.4
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysd.gevrl 64 
                  + ++ ++  W+p +  +  ++sd g +++
   CCE27626.1 563 HTKRCNGATWNPADPCMIASCSDeGPIKI 591
                  44555666777777777777665245655 PP

>> Gmad1  Lipoprotein LpqB beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.1e-07   0.00076     101     204 ..     295     391 ..     253     419 .. 0.80
   2 ?   -2.4   0.0      0.89   3.2e+03      24      77 ..     438     491 ..     432     507 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.1e-07
       Gmad1 101 vveVdasalragpvtelrvSrDGtRaAvivekdgggkvyvavVvrdadGqksltapvalatglleeavsvsWrsedtLvVlrsseg.gpvqalVsldgs 198
                 +v  + ++  +g+v e++ S+DG R+A         +  v  + ++++  +s +  + ++ + ++ + s++W+ +d+++V  s+++ + +++  ++ gs
  CCE27626.1 295 EVVLELPDAGMGEVWEVQFSHDGSRLASCG------STNVVSIWETQTFMDSASLVIHVQKDHESGVASIAWSPNDQMLVTCSRDNyARIWD--TVTGS 385
                 56666777777***************9766......99999********9999999*********************999866554155666..77777 PP

       Gmad1 199 esealp 204
                  +++lp
  CCE27626.1 386 LIKKLP 391
                 777774 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.89
       Gmad1  24 dlrsaAvSrdgqqvaavtapdggrtLvv..gsyggeasevleggsltrpSwdrd.ga 77 
                 ++++++ S dg+ ++a +   + +t++v  g++ +   e+  g++ t++S+++d  +
  CCE27626.1 438 RVQALSASLDGRWLVAAD---NMTTIYVynGQTRELEYELDLGTQPTSLSISQDcRS 491
                 566677777777666666...555555522333333344446666666666666444 PP

>> DUF1513  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.14     5e+02     192     253 ..     174     234 ..     169     253 .. 0.84
   2 ?    9.3   0.0   0.00015      0.52     219     259 ..     355     394 ..     315     456 .. 0.78
   3 ?   -3.5   0.0       1.2   4.3e+03     227     253 ..     532     558 ..     507     571 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.14
     DUF1513 192 llalhrrgealealeapeeelaalagYigsvavdsegrlvavtsPrgnlvavwdlasgelle 253
                  l l +r    +al++ ++el+ l++ +g   + s+  l+++++++  + a wd a+ge ++
  CCE27626.1 174 FLELLERRDTANALQVLRNELTPLHHDTGKLHLLSSL-LMCLSTNELMTKANWDGARGESRR 234
                 55666677779999999999************99986.999************999998776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00015
     DUF1513 219 igsvavdsegrlvavtsPrgnlvavwdlasgelleeaalad 259
                 ++s+a + +++ + vt+ r n + +wd+ +g+l+++ +  d
  CCE27626.1 355 VASIAWSPNDQ-MLVTCSRDNYARIWDTVTGSLIKKLPRFD 394
                 89***988865.55********************9988766 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.2
     DUF1513 227 egrlvavtsPrgnlvavwdlasgelle 253
                  ++ ++v+  + +++++w+++ g+ +e
  CCE27626.1 532 ANESFVVSGSEDGCMFIWHKSIGAAVE 558
                 556778888889999999988887765 PP

>> WD40_3  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.026        93       6      56 ..     351     402 ..     350     403 .. 0.88
   2 ?    6.4   0.0    0.0025         9       9      39 ..     438     468 ..     431     472 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.026
      WD40_3   6 HsvgIkklfpnpsGtrlvfiDekgdgfvynPvseell.eipdfpstvkgvLW 56 
                 H+ g+ ++   p+   lv    ++ + +  +v+ +l+ ++p f + v++++W
  CCE27626.1 351 HESGVASIAWSPNDQMLVTCSRDNYARIWDTVTGSLIkKLPRFDEPVSACVW 402
                 888999999999999999999999999999999777736************* PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0025
      WD40_3   9 gIkklfpnpsGtrlvfiDekgdgfvynPvse 39 
                  + +l +  +G  lv  D+ +  +vyn  ++
  CCE27626.1 438 RVQALSASLDGRWLVAADNMTTIYVYNGQTR 468
                 5667777889****************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4475.73
//
Query:       CCE27627.1  [L=699]
Description: probable VpsA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-100  335.8   0.0   3.5e-100  334.9   0.0    1.4  1  Dynamin_M  Dynamin central region
    2.1e-56  190.6   0.0    3.7e-56  189.8   0.0    1.4  1  Dynamin_N  Dynamin family
    3.3e-29  100.9   4.8    7.3e-29   99.8   4.8    1.6  1  GED        Dynamin GTPase effector domain
    1.1e-05   25.5   0.2      9e-05   22.5   0.2    2.3  1  MMR_HSR1   50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.03   14.0   0.9        2.4    7.8   0.1    2.3  2  AAA_15     AAA ATPase domain


Domain annotation for each model (and alignments):
>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.9   0.0  9.8e-104  3.5e-100       1     284 [.     244     528 ..     244     529 .. 0.98

  Alignments for each domain:
  == domain 1  score: 334.9 bits;  conditional E-value: 9.8e-104
   Dynamin_M   1 vvdilenkvipLklGYvgVvnRsqkdInkkksieealkkEkaFFeshpayrkladkaGtpyLakkLnqiLvehIrkslPelkkkineklqklekeleel 99 
                 v+dil+n+vipL+lGYv VvnR+q+dI++kk i+ al++EkaFFe+h+ayr+ ++++GtpyLa+kLn iL+ hI+++lP++k++i+++lqk+++ele+l
  CCE27627.1 244 VIDILSNRVIPLRLGYVPVVNRGQRDIDNKKAINVALESEKAFFENHKAYRNKSSYCGTPYLARKLNLILMMHIKQTLPDIKARISSSLQKYSSELESL 342
                 79************************************************************************************************* PP

   Dynamin_M 100 geskpsdeektklllqlitkfkedfkklieGe.sevstkelsggarireiFnetlekslekidpleelsdeeirtairnsrGrelplfvpekaFealvk 197
                 g+s+    +  +++l++it+f+++ +++++G+ +e+s+ elsggari+ +F+e +++ ++ +dp++ ++d +irt+++ns+G++++lfv ++aFe +vk
  CCE27627.1 343 GPSMLG--NSANIVLNIITEFTNEWRTVLDGNnTELSSTELSGGARISFVFHELYANGIKAVDPFDVVKDVDIRTILYNSSGSSPALFVGTTAFELIVK 439
                 *98765..9***********************44488************************************************************** PP

   Dynamin_M 198 kqikkleepalkcvelVyeelekivek.lek.elkrFpnLreeikevvedllreqeeptkemienliemelayintnhpdfigalkair 284
                 +qik+le+p+lkcv l+y+el +i+++ l k  ++r+p L+e++  vv  ++++ +ept++++++l++me +y+nt hpdf+++++a++
  CCE27627.1 440 QQIKRLEDPSLKCVSLAYDELVRILSQlLGKsLYRRYPSLKEKMHGVVIAFFKKAMEPTNKLVRDLVAMEACYVNTGHPDFLNGHRAMA 528
                 ***************************88888899**************************************************9985 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.8   0.0     1e-59   3.7e-56       1     168 []      41     235 ..      41     235 .. 0.96

  Alignments for each domain:
  == domain 1  score: 189.8 bits;  conditional E-value: 1e-59
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C.............CS...SSEEEE....T-EB--CHHHHHHHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas.............eravkeelkek....ekkledfsevreeieketekiaga 82 
                 i+vvGsqSsGKSSvl++++g+d+lprg++++Trrpl+lql++ +  s             ++a+ +e++e+     +k++df ++reei +ete + g+
  CCE27627.1  41 IVVVGSQSSGKSSVLENIVGRDFLPRGNGIVTRRPLVLQLNNRPAQSngvnpdevsnaddKAANADEWGEFlhipGQKFYDFGKIREEIARETEAKVGK 139
                 89**************************************7777766777788888888778889999999**************************** PP

                 SSS--SS-EEEEEEETTS-SEEEEE---B-SSSGTTS.........HHHHHHH.STTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE-C CS
   Dynamin_N  83 nkgiskkvillkilsllvkgltlvDlPGldsvnkrdq.........elvkeyi.kkadiilavtsanhdlsnsealflarevdpkgkrtivvltkl 168
                 n gis  +i+l+i+s++v +ltlvDlPGl++v+++dq         e+v +yi k+++iilavtsan dl+ns+ l+larevdp+g+rti+vltk+
  CCE27627.1 140 NAGISPAPINLRIYSPNVLTLTLVDLPGLTKVPVGDQprdierqirEMVLKYIgKSNAIILAVTSANIDLANSDGLKLAREVDPEGQRTIGVLTKV 235
                 **********************************************************************************************96 PP

>> GED  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   4.8     2e-32   7.3e-29       1      92 []     607     698 ..     607     698 .. 0.98

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 2e-32
                 XXXXXTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCCCHHHCCTTSGGGHHHHT---SCHCCCCHHHHHHHHHHHHHCCCCCHH CS
         GED   1 reeseveeirslvksYfnivrktiadqiPkaimhllvneakeslqkellakLykkedldeLLkEdeeiaekRkelkkrlealkkAreilsev 92 
                 re++eve+i+ l+ sY+niv++t+ d++Pkaim+ lv+ +k+++q+ell+++y++++ld+LLkE++ ++++Rke+++++e+l kA+ei+s+v
  CCE27627.1 607 RENIEVEVIKLLIASYYNIVKRTMIDMVPKAIMLNLVQLTKDEMQRELLENMYRTDTLDDLLKESDFTVRRRKECQQMVESLGKASEIVSQV 698
                 5899*************************************************************************************986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.2   2.5e-08     9e-05       1      99 [.      40     216 ..      40     234 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.5e-08
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE.................................................... CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke.................................................... 47 
                 ++++vG   +GKS+++  ++g+         +Tr +   +++ +  +                                                    
  CCE27627.1  40 QIVVVGSQSSGKSSVLENIVGRDFLPRGNGIVTRRPLVLQLNNR--Paqsngvnpdevsnaddkaanadewgeflhipgqkfydfgkireeiareteak 136
                 589*******************9999999999****99999933..2346777888899999999********************************** PP

                 .......................EEEEECGGCSS......HHHHHHHHHHHHHH.HHCTSEEEEEEETTTTCSHHHHHHHHH CS
    MMR_HSR1  48 .......................ielvDtpGlie......gaseekglgkafla.leeadlillvvdaseeklkpldeelee 99 
                                        ++lvD+pGl +        + e+++++ +l+ + ++++i+l v ++  +++  +++  +
  CCE27627.1 137 vgknagispapinlriyspnvltLTLVDLPGLTKvpvgdqPRDIERQIREMVLKyIGKSNAIILAVTSA--NIDLANSDGLK 216
                 *******************************85333322222222244444444344577777777633..24434444444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1   0.00066       2.4      26      43 ..      41      58 ..      33      59 .. 0.84
   2 ?    4.4   0.1    0.0069        25     200     317 ..     287     439 ..     263     453 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00066
      AAA_15 26 tvliGkNnsGKSsileal 43
                 v++G ++sGKSs+le +
  CCE27627.1 41 IVVVGSQSSGKSSVLENI 58
                799************966 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0069
      AAA_15 200 isakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelk...........kilkkkidkikkfnykgkkneeieik 287
                 +++ + + ++ s    ++l ++++ il+          +++ l++i+  ++   +k+++el+           +i+ ++i ++ ++   + + +++e++
  CCE27627.1 287 FENHKAYRNKSSYCGTPYLARKLNLILMM--------HIKQTLPDIKARISSSLQKYSSELEslgpsmlgnsaNIVLNIITEFTNEWRTVLDGNNTELS 377
                 44444444444444444555555555553........46778888888888888888888888888888888877777777777777777777777777 PP

      AAA_15 288 ................................ddeelplnknGsGvqrllllillileaekk 317
                                                 d +  ++ +n+sG + +l++ +  +e++ k
  CCE27627.1 378 stelsggarisfvfhelyangikavdpfdvvkDVDIRTILYNSSGSSPALFVGTTAFELIVK 439
                 77777889999999999999999999999997777778999999999999999999998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 4461.26
//
Query:       CCE27628.1  [L=445]
Description: probable alpha-methylacyl-coa racemase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-56  190.5   0.0    6.4e-56  190.1   0.0    1.1  1  CoA_transf_3  CoA-transferase family III


Domain annotation for each model (and alignments):
>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.1   0.0   3.6e-60   6.4e-56       1     322 [.      12     344 ..      12     350 .. 0.86

  Alignments for each domain:
  == domain 1  score: 190.1 bits;  conditional E-value: 3.6e-60
  CoA_transf_3   1 LaGvrVldlsqvlaGplatslLAdlGAeVIkvEppkkgDpaRkvgpseekgesayflavnrnKrsvalDlkseegrellkrLvakA..........D 87 
                   L G++Vl+++ +  Gp+a++lLAd GA V ++++p +  p R+ ++++   +      ++r K s+ l+lks+ g ++lk+L+ +           D
    CCE27628.1  12 LTGLKVLEFAGLAPGPFAGMLLADAGASVLRIDRPPT--PNRANTHHQ--TSLPPSDPLTRHKASIPLNLKSPSGIAFLKKLISSGppdsppsagiD 104
                   89*********************************54..557664444..57788999*************************7533333333344* PP

  CoA_transf_3  88 VvieNfrpgvlerlglgyeelrainPrLiyasvsgyGqsGpkakrpgyDlvaqaasGlmsltgepdgpPvkvgvplgDi.vtgllaavailaallar 183
                   ++i+ frpgvle+l lg+++l   nPrLiya+++g+ ++G +a+++g+D+++ a+sG +sl g ++++P  + + l+D+  +g ++ ++il+al+ar
    CCE27628.1 105 ILIDPFRPGVLEKLTLGPQDLLPLNPRLIYARLTGFRRDGRYASMAGHDINYLAVSGTLSLLGRSHDTPHPPTNILADFaGGGANLFQGILLALFAR 201
                   ******************************************************************************9567899999********* PP

  CoA_transf_3 184 er..tGkGqvidvslleaalallapqlley..latgevperq.gnrdpaaapygvyrtkdg.wvaiaaatdkqwaalckalgrpe...laedprfat 271
                   e     +Gqv++++++++a+ l  +  l     ++ + + r  +  d + ++y++y+t+dg +++++a +++++++l++ lg +    l e +rf  
    CCE27628.1 202 ETclPSRGQVVEANMVDGAAYLATYPRLGLknGMASPGRGRGrNLLDGGCPFYDTYETRDGkYFSVGAIEPQFFRRLVEGLGLEGhpgLGEGERFDP 298
                   **888***************98877665532344444444331334448899***************************999987555666666665 PP

  CoA_transf_3 272 nasrlenraeldaelaewlaertaaewlellaaagvpaapvntleevlddp 322
                   +         ++a+++ +++ +t++ew+ +++  + +a pv +  e+ +dp
    CCE27628.1 299 EGW-----PGMRALFRHVFKGKTRDEWEVIFDGTDACAVPVLEFGELERDP 344
                   555.....99********************************999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       167  (0.00931452); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3253.87
//
Query:       CCE27629.1  [L=380]
Description: related to integral membrane protein PTH11 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.7    8.3  10.8         13    6.0  10.8    2.2  1  DUF4293    Domain of unknown function (DUF4293)
        4.4    7.5   8.7       0.44   10.7   0.6    2.9  3  DUF5367    Family of unknown function (DUF5367)


Domain annotation for each model (and alignments):
>> DUF4293  Domain of unknown function (DUF4293)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  10.8    0.0015        13      34     120 ..     147     278 ..      48     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0015
     DUF4293  34 lsfyalgvstaeaetsvnvsvwvlvilllliai...............................................laliaIflyknRklQlrlc 85 
                 l+fy +++ +a+++  +    w+ v++++l ai                                               l +i I ly+ R+lQl+  
  CCE27629.1 147 LAFYMTIFPSASTGPWTRRLLWGCVVFNALLAIasilvtlfqcrpvsyywrqfvdngvdgfcipsaplayvngslnvaldLWMIMIPLYRVRHLQLHWK 245
                 45565666666677777777788888877777788888889999999999999999999999999999999999999999999999************* PP

     DUF4293  86 linllllvllyvllallllvnkanaaaeslgessl 120
                 +   +++++l++++++  +v+  + a  s+ + s+
  CCE27629.1 246 HKAGVVIMFLMGTFIT--IVSTFRLASLSNFDASI 278
                 9999999999999998..44444444444444444 PP

>> DUF5367  Family of unknown function (DUF5367)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.27   2.4e+03      34      34 ..      76      76 ..      45     108 .. 0.46
   2 ?    0.4   0.4     0.079   7.1e+02      55      89 ..     144     175 ..     135     183 .. 0.78
   3 ?   10.7   0.6   4.9e-05      0.44       3      71 ..     209     277 ..     207     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.27
     DUF5367 34 l 34
                 
  CCE27629.1 76 S 76
                1 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.079
     DUF5367  55 vlilvfFeeifpnlqpeaaslFaswlLwayslvll 89 
                 ++ l+f+  ifp     + + ++  lLw+ ++ ++
  CCE27629.1 144 MALLAFYMTIFPS---ASTGPWTRRLLWGCVVFNA 175
                 5678999999998...7788899999998887655 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 4.9e-05
     DUF5367   3 edeatllllvlfllviplllvlllpvykykklnkterlkaai.lialpgmllDvlilvfFeeifpnlqpe 71 
                 +++a+l+ ++  l v + l+++++p+y+ ++l+ + + ka++ ++ l g ++ ++++   +++ +n++++
  CCE27629.1 209 IPSAPLAYVNGSLNVALDLWMIMIPLYRVRHLQLHWKHKAGVvIMFLMGTFITIVSTFRLASL-SNFDAS 277
                 5677777788888888899********************997256899******999998888.888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2846.38
//
Query:       CCE27630.1  [L=826]
Description: related to nitrate assimilation regulatory protein nirA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-16   59.2   0.6    4.8e-16   58.6   0.6    1.3  1  Fungal_trans  Fungal specific transcription factor domain
    1.4e-15   57.1  27.8    8.6e-08   32.2  10.2    2.6  2  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.6   5.4e-20   4.8e-16       2     207 ..     231     414 ..     230     475 .. 0.80

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 5.4e-20
  Fungal_trans   2 drffsnfh..pqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqs 96 
                   d ff ++h  p + +lh+ s++++      +  +  ++lll++i ++ +l    +  ++  ++  +         rae+li   + ++++s+  +q+
    CCE27630.1 231 DQFFRHVHhiPMYSFLHRASLMEQH-----HAGKVDKALLLALIGITSCLTDMGPGVREYGDRCID---------RAESLI--FADYSRPSTFKVQA 311
                   679999665899*************.....666666666667777777777777777776666663.........899999..67777777799*** PP

  Fungal_trans  97 LlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlw 193
                   L+l+    + s + +++  ++++a r+a  l+L+ ++++        l +  +esrrRl w+ +++D+ ia  ++   l +++ i ++LPc++++++
    CCE27630.1 312 LVLMIKHRILSNRYPSAFVLLSMASRFAAALRLNHKSPN--------LCFLAQESRRRLMWSLYCIDTGIAAGYRDFALWRADRIFVSLPCNERNFE 400
                   **********************************99988........567779*****************************************999 PP

  Fungal_trans 194 esddaseetlvetk 207
                   + +   +e l+ ++
    CCE27630.1 401 FDLPQPAEMLIPDS 414
                   88777777776666 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2  10.2   9.6e-12   8.6e-08       3      35 ..      75     106 ..      73     110 .. 0.93
   2 !   30.3   9.5   3.7e-11   3.3e-07       1      35 [.     123     156 ..     123     161 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 9.6e-12
                 -HHHHHCT---STSSSS-HHHHHCTHHHCCCCT CS
     Zn_clus   3 CdnCrkkKvKCdakkPaCsnCkklnleCtfyse 35 
                 C +Cr +Kv+C++ +P+Cs C++l+++C+ y++
  CCE27630.1  75 CSTCRCRKVRCNGSRPVCSGCQRLGFPCS-YED 106
                 *****************************.876 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 3.7e-11
                 SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCT CS
     Zn_clus   1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfyse 35 
                 +aC +C+++K +C++++PaC +C+  + +C+ y+ 
  CCE27630.1 123 RACLSCHSRKARCSGQTPACDRCRVQGIHCV-YRS 156
                 69*****************************.764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5656.22
//
Query:       CCE27631.1  [L=75]
Description: uncharacterized protein CPUR_01105 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 619.48
//
Query:       CCE27632.1  [L=1903]
Description: uncharacterized protein CPUR_01106 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1903 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1019  (0.0568353); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.06u 0.30s 00:00:01.36 Elapsed: 00:00:00.47
# Mc/sec: 12251.70
//
Query:       CCE27633.1  [L=689]
Description: uncharacterized protein CPUR_01107 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-09   35.5   6.9    1.6e-08   34.4   6.9    1.7  1  Hap4_Hap_bind  Minimal binding motif of Hap4 for binding to H
    5.9e-08   32.7   1.7    1.3e-07   31.6   1.7    1.5  1  bZIP_1         bZIP transcription factor
    0.00048   19.5   4.6    0.00048   19.5   4.6    2.7  2  Med3           Mediator complex subunit 3 fungal
     0.0063   17.6   1.4       0.65   11.1   0.0    3.2  2  RBM39linker    linker between RRM2 and RRM3 domains in RBM39 
  ------ inclusion threshold ------
      0.026   14.6   1.3      0.026   14.6   1.3    2.8  3  bZIP_2         Basic region leucine zipper
       0.35    9.7   2.5       0.54    9.1   2.5    1.2  1  Fmp27_WPPW     RNA pol II promoter Fmp27 protein domain
        4.4    7.5  10.9        5.2    7.3   0.7    2.6  2  DUF2188        Uncharacterized protein conserved in bacteria 


Domain annotation for each model (and alignments):
>> Hap4_Hap_bind  Minimal binding motif of Hap4 for binding to Hap2/3/5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   6.9   6.3e-12   1.6e-08       1      17 []     120     136 ..     120     136 .. 0.98

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 6.3e-12
  Hap4_Hap_bind   1 tSKnWVLPPRpKPGRKP 17 
                    tSK+WV+PPRpKPGRKP
     CCE27633.1 120 TSKEWVIPPRPKPGRKP 136
                    8***************9 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   1.7   4.9e-11   1.3e-07       7      61 ..     143     194 ..     142     200 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 4.9e-11
                 XXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   7 ekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevekLks 61 
                 ++rk++NR a+r++R+R+ a++ eLe++ ++++   +   +e +elk+++ +L+ 
  CCE27633.1 143 TRRKAQNRAAQRAFRERRAARVGELEQQLDEIKDGYH---KEEGELKDKIHSLEL 194
                 69***************************99998777...899999999998875 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -15.3  17.3         7   1.8e+04     138     166 ..      49      77 ..       9     170 .. 0.46
   2 !   19.5   4.6   1.9e-07   0.00048     207     241 ..     352     386 ..     295     452 .. 0.84

  Alignments for each domain:
  == domain 1  score: -15.3 bits;  conditional E-value: 7
        Med3 138 vnstpssaastPtttatPgantktaaksl 166
                 ++ + ++a + P+  + Pg  +k+a+++l
  CCE27633.1  49 SARSLAAAVTPPARVPLPGKPPKKATNAL 77 
                 11122222222233344444444333333 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.9e-07
        Med3 207 kaaakaaakaqaqaqaqaqaqqqvlanpnqvqtPi 241
                 +a+a+a+a+aqaqaqaq q q qv ++ ++++ P 
  CCE27633.1 352 QAQAQAQAQAQAQAQAQEQGQGQVQGQGQELKRPA 386
                 35677777777777777777778888887777774 PP

>> RBM39linker  linker between RRM2 and RRM3 domains in RBM39 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00025      0.65      64      85 ..     179     214 ..     133     220 .. 0.58
   2 ?    2.4   1.5      0.13   3.4e+02      34      72 ..     351     391 ..     340     412 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
  RBM39linker  64 a..............svavpiatecllLkNMFdpae 85 
                  +                 +++ ++cllL+NM d + 
   CCE27633.1 179 HkeegelkdkihsleLDLQSFRSRCLLLENMLDRER 214
                  033333344555555778999***********9875 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.13
  RBM39linker  34 aaaaaalqnsaaaaeaat.aveaaapaeak.lasvavpiat 72 
                  ++a+a+ q++a+a+++a+ + + +++ + + l+ +a+p at
   CCE27633.1 351 GQAQAQAQAQAQAQAQAQeQGQGQVQGQGQeLKRPASPSAT 391
                  33333333333333333222222222222233345555554 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.3     1e-05     0.026       8      37 ..     144     174 ..     139     177 .. 0.92
   2 ?    0.5   0.1      0.26   6.7e+02      26      53 ..     181     208 ..     179     209 .. 0.88
   3 ?   -1.5   1.1       1.1   2.7e+03      21      40 ..     211     230 ..     208     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1e-05
                 XXX.XXXXXXXX-HHHHHHHHHHHHHHHHHH CS
      bZIP_2   8 rRr.kNreAarrsRekkkakeeeleervkeL 37 
                 rR+ +Nr+A r +Re++ a+  ele+++ e 
  CCE27633.1 144 RRKaQNRAAQRAFRERRAARVGELEQQLDEI 174
                 9999**********************99886 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  26 keeeleervkeLeeeNaqLrqkveqLek 53 
                 +e el++++ +Le + + +r ++  Le+
  CCE27633.1 181 EEGELKDKIHSLELDLQSFRSRCLLLEN 208
                 56799***************99999985 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  21 ekkkakeeeleervkeLeee 40 
                 ++ ++  +  e ++++L+++
  CCE27633.1 211 DRERQDRIRAETEAENLRRR 230
                 79999999999999999985 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.5   0.00021      0.54     186     253 ..     163     227 ..     144     265 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00021
  Fmp27_WPPW 186 qiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesseeeeskskel 253
                 ++ +le++l+e+++  +ke+ elk++i++le ++++++++  +le++l++ ++++ ++e+e +   +l
  CCE27633.1 163 RVGELEQQLDEIKDGYHKEEGELKDKIHSLELDLQSFRSRCLLLENMLDRERQDRIRAETEAE---NL 227
                 445789999999999999999****************************99888775442222...22 PP

>> DUF2188  Uncharacterized protein conserved in bacteria (DUF2188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.7     0.002       5.2      17      44 ..     133     161 ..     129     167 .. 0.84
   2 ?    3.9   3.7     0.024        61      27      48 ..     355     376 ..     343     383 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.002
     DUF2188  17 GgsrasktfdTqeeAieaArelA.keqgg 44 
                 G + a+ t++T+ +A  +A ++A +e + 
  CCE27633.1 133 GRKPATDTPPTRRKAQNRAAQRAfRERRA 161
                 77789******************888543 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.024
     DUF2188  27 TqeeAieaArelAkeqggselv 48 
                  q++A ++A++ A+eqg++++ 
  CCE27633.1 355 AQAQAQAQAQAQAQEQGQGQVQ 376
                 5888888888888889998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1012  (0.0564449); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 4828.48
//
Query:       CCE27634.1  [L=296]
Description: uncharacterized protein CPUR_01108 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-25   88.4   0.3      6e-25   87.9   0.3    1.2  1  COG2          COG (conserved oligomeric Golgi) complex compon
     0.0018   18.3   0.4      0.027   14.5   0.0    2.3  2  Vps51         Vps51/Vps67
  ------ inclusion threshold ------
      0.024   13.5   0.6      0.039   12.8   0.6    1.3  1  Spc7          Spc7 kinetochore protein
      0.062   12.6   0.0      0.099   11.9   0.0    1.3  1  Vps54_N       Vacuolar-sorting protein 54, of GARP complex
       0.25   11.6   0.5       0.48   10.6   0.1    1.6  2  DUF1492       Protein of unknown function (DUF1492)
        1.9    8.5   5.7       0.54   10.3   2.3    1.8  2  Sugarporin_N  Maltoporin periplasmic N-terminal extension


Domain annotation for each model (and alignments):
>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.3     2e-28     6e-25       5     132 ..      44     172 ..      41     173 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 2e-28
        COG2   5 eheFgvpdFdpdqFvse.lrhgvpLeslrrdLeaylkllekellelvnedyadFvslSghLvglqeeleevesplaaarkkvesvreklsereeevesk 102
                 +++F v++Fdp++++s    ++++Le+lr+dL++ ++ +++ellelvn +y  F+sl+++L+g +e++  v++ l+a+r+ ve+v++k+++++ e ++ 
  CCE27634.1  44 RSDFVVENFDPAAYLSAlPHRHQTLEDLRSDLRDRSAVISAELLELVNANYTAFLSLGSELKGGDEKVGDVKVALLAFRRAVEEVKAKVARKKGETRQL 142
                 679**************9999****************************************************************************** PP

        COG2 103 leeakeleekrellklllkldevvekleal 132
                  +e + ++ + e  + +l+l++++  le+ 
  CCE27634.1 143 NDELRLVRGHIEEGRKMLELEDRLAMLEKR 172
                 **************************9986 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     9e-06     0.027       4      61 ..      50     105 ..      47     115 .. 0.89
   2 ?    1.5   0.2       0.1   3.1e+02      17      43 ..     121     147 ..     108     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9e-06
       Vps51   4 pdfdaeayvrellakstlkellkveasllseiraldselkalVydnYskLisasdtIr 61 
                 ++fd+ ay++ l +++  ++l  ++++l+       +el +lV  nY+ ++s  ++++
  CCE27634.1  50 ENFDPAAYLSALPHRH--QTLEDLRSDLRDRSAVISAELLELVNANYTAFLSLGSELK 105
                 69********666655..5999*****************************9888775 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.1
       Vps51  17 akstlkellkveasllseiraldselk 43 
                  ++ ++e++++ a+ + e r+l+ el+
  CCE27634.1 121 FRRAVEEVKAKVARKKGETRQLNDELR 147
                 56778999*****************98 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6   1.3e-05     0.039     164     255 ..      67     171 ..      58     176 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
        Spc7 164 eldellpeleeekaeleeeleklqe...............aaeelesid.keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksel 246
                  l++l  +l+ + a +++el +l +                 e++   d k  L ++r++++e+ka++++kk e+ +l+++l  ++  iee   ++ el
  CCE27634.1  67 TLEDLRSDLRDRSAVISAELLELVNanytaflslgselkgGDEKVG--DvKVALLAFRRAVEEVKAKVARKKGETRQLNDELRLVRGHIEEG-RKMLEL 162
                 5555555555555555555555544222222222111111222222..22566777888888888888888888888888888888888887.666677 PP

        Spc7 247 eeeiaeaer 255
                 e+++a  e+
  CCE27634.1 163 EDRLAMLEK 171
                 776666655 PP

>> Vps54_N  Vacuolar-sorting protein 54, of GARP complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.3e-05     0.099      10      99 ..      49     134 ..      45     168 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.3e-05
     Vps54_N  10 deefdpikyeLkklpddelsyesiekevkklksqhdvvskklsqlilekreefvkelseveeiekelkesvvickngrraLdlakkeltr 99 
                  e+fdp+ y L  lp+     +++e  +  l+    v+s  l++l+  ++++f +  se++  ++++ ++ v   + rra++  k +++r
  CCE27634.1  49 VENFDPAAY-LSALPHR---HQTLEDLRSDLRDRSAVISAELLELVNANYTAFLSLGSELKGGDEKVGDVKVALLAFRRAVEEVKAKVAR 134
                 5799**988.9999999...788***********************************************************99998876 PP

>> DUF1492  Protein of unknown function (DUF1492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00016      0.48      13      55 ..     105     146 ..     100     152 .. 0.88
   2 ?   -3.5   0.0       3.9   1.2e+04      28      51 ..     224     247 ..     222     251 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
     DUF1492  13 qGGkkkkkddvyveLvvakediekktaeaikkklelqrlidkl 55 
                 +GG   k+ dv v L++ + ++e+  a + +kk e ++l d+l
  CCE27634.1 105 KGGD-EKVGDVKVALLAFRRAVEEVKAKVARKKGETRQLNDEL 146
                 5665.5799***************************9998887 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.9
     DUF1492  28 vvakediekktaeaikkklelqrl 51 
                 +  ke ++++   +ik +  l r 
  CCE27634.1 224 ILLKESLDQDHPFVIKLEERLTRC 247
                 677899999998888877777665 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.3   0.00018      0.54      25      40 ..     159     174 ..     157     175 .. 0.87
   2 ?   -3.5   0.1       3.7   1.1e+04      35      39 ..     240     244 ..     239     249 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
  Sugarporin_N  25 sltiEaRLaaLEkrLq 40 
                   +l +E+RLa LEkrL+
    CCE27634.1 159 MLELEDRLAMLEKRLA 174
                   5669***********7 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.7
  Sugarporin_N  35 LEkrL 39 
                   LE rL
    CCE27634.1 240 LEERL 244
                   66666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2255.77
//
Query:       CCE27635.1  [L=291]
Description: related to ribosomal protein L1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-23   83.7   0.0      2e-23   83.2   0.0    1.1  1  Ribosomal_L1  Ribosomal protein L1p/L10e family
  ------ inclusion threshold ------
       0.17   12.5   0.0       0.17   12.5   0.0    1.8  2  DUF883        Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   2.3e-27     2e-23       7     204 .]      79     267 ..      72     267 .. 0.90

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 2.3e-27
                   SSS--EEEEEEEESSS-TTSGGG--EEEEE-STSTSSCS-EEEEE-HHHHH...HHHHTT..-SEEETCHHHHHHT-HHHHHHTCCH-SEEEEEGGG CS
  Ribosomal_L1   7 kkfdesveialnlttkkpkkadqrkpgkipLphplgkevkiclitkdpqaeyakeakeagriakviglkklkkkyksfeakrkllkefdlfladdri 103
                    +  +s+++ l++ ++k++++   ++g+i Lp+ +++e ++++i+ +++   a  a++ag  a  +g +++ + +      r+    fd  +++++ 
    CCE27635.1  79 GQPPASIKYELHI-NLKTPRNGPVIKGSIRLPNAVQSEWQVAVICPEDSDI-AIAAAAAG--AVAVGEETIFEAV------RAEKIGFDRLICHEKS 165
                   5666778889999.88899999***********************998777.56788888..9999999999888......999************* PP

                   HHHHHH.HCHHHHGGGT-S-ECC..CT.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTSTTT....SGSEEE CS
  Ribosomal_L1 104 mpllpk.lLGkvfgkrkkmPipvltkgtvkedvkkevekalkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvekvpkk....wkniks 195
                    + l k  LGk++g++++mP+     +t+ +dv k+++++ + + ++r ++++++ ++vG+l++t+++l++Ni+ ++k++++++        k i +
    CCE27635.1 166 EQALNKaGLGKILGPKGLMPNRR--MKTIVDDVGKAIRDLAG-AAEYR-ERQGVIRLAVGQLGHTPDQLKANISGLLKKIKSECADLqdevAKDIHE 258
                   ******67***************..668889***********.88***.**********************************44444679****** PP

                   EEEEETTS- CS
  Ribosomal_L1 196 iylkttmsp 204
                   + l+tt++p
    CCE27635.1 259 VILSTTNGP 267
                   *******98 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.0   3.3         2   1.8e+04      79      85 ..     130     137 ..     128     140 .. 0.44
   2 ?   12.5   0.0   1.9e-05      0.17      18      65 ..     216     263 ..     198     265 .. 0.87

  Alignments for each domain:
  == domain 1  score: -7.0 bits;  conditional E-value: 2
      DUF883  79 iAag.vGl 85 
                 iAa+  G+
  CCE27635.1 130 IAAAaAGA 137
                 44442444 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.9e-05
      DUF883  18 lkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaa 65 
                 ++ a  + g++ ++l+++++  l++ +++++d++++va+ ++e++ ++
  CCE27635.1 216 IRLAVGQLGHTPDQLKANISGLLKKIKSECADLQDEVAKDIHEVILST 263
                 5556666778889*****************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2382.67
//
Query:       CCE27636.1  [L=631]
Description: probable glutamate--tRNA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.4e-106  353.8   0.2   9.9e-105  349.9   0.0    2.0  2  tRNA-synt_1c    tRNA synthetases class I (E and Q), catalytic
    4.4e-38  130.9   0.0    6.9e-38  130.2   0.0    1.3  1  tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codo
     0.0085   15.5   0.2      0.019   14.4   0.2    1.5  1  tRNA-synt_1e    tRNA synthetases class I (C) catalytic domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.9   0.0  1.7e-108  9.9e-105       2     313 ..     114     419 ..     113     420 .. 0.98
   2 ?    2.1   0.0     0.012        73     257     314 .]     473     529 ..     464     529 .. 0.81

  Alignments for each domain:
  == domain 1  score: 349.9 bits;  conditional E-value: 1.7e-108
                   -EEEE---SSSS-BHHHHHHHHHHHHH.HHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE CS
  tRNA-synt_1c   2 VrtRfaPePtGyLHiGhakaallnylf.AknnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvc 97 
                   V+tRf PeP+GyLHiGhakaall+ +f   +++G++ lR++DT+p++e ee++++i+edl+++gik+ + +ty+sd+fd l++++++Li+ GkAY +
    CCE27636.1 114 VVTRFLPEPSGYLHIGHAKAALLSDYFgHVAYKGQMRLRLDDTNPAKESEEFQDAIVEDLALMGIKP-DALTYTSDYFDYLYDMCKKLISMGKAYAD 209
                   89*******************9975551679************************************.66*************************** PP

                   -STHHHHHHHHCCSSHSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSS.GGGSSTEEEEEEESGGGSBTTTBTSTSEEE-HHHHHHH CS
  tRNA-synt_1c  98 ectkeeleeereeqeklgskerdrydeenlklfeeemkkgkaegekavvRlkideess.vefrDlvrgriklepqeihdlvivksdiyPtYdfavvi 193
                   ++ +e ++++r++   + sk+rdr++ee l++f eemkk ++eg+++++R+ki    +  ++rD+v++r+++e+   h+++++k++ yP+Ydfa+++
    CCE27636.1 210 DTDQETMRAQRMD--GIPSKHRDRTVEETLRIF-EEMKKASDEGRAHCIRAKISADDPnKAMRDPVIYRCNVEN--SHHRTGRKWNMYPMYDFACPV 301
                   ***********99..99999*************.9***********************9***************..9******************** PP

                   HHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHHHHHHHC CS
  tRNA-synt_1c 194 dDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekerelftree 290
                   +D+ e++th+lr +e+ d++p+y w+l+ l+l+ +++++ ++r+n+ k+ lSKRkl+ lvd  +v +wdd+r+++++++rr+G+++++ r+++ r++
    CCE27636.1 302 VDSYEGVTHALRSTEYTDRNPQYQWFLDTLSLR-QVHMWDFARMNFVKTFLSKRKLAKLVDAGKVWGWDDPRMPTVRGVRRRGMSVAALRDFIIRQG 397
                   *********************************.*************************************************************** PP

                   CCSSS.EEEEHHHHHHHHHHHHH CS
  tRNA-synt_1c 291 liksfdlnresksleafdrkkLe 313
                    ++++ +n  + s++a+++k+++
    CCE27636.1 398 PSRNV-VNLDWTSFWAANKKEID 419
                   *****.**************997 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.012
                   SSSSTT-TTSCBHHHHHHCTB-HHHHHHHHHHHCCCSSS.EEEEHHHHHHHHHHHHHH CS
  tRNA-synt_1c 257 qvkewddlreallnflrrlGwtpekerelftreeliksfdlnresksleafdrkkLew 314
                    ++++d  ++ l + ++++Gw  +  rel +++ + +++ l+ ++k   +  +kk++w
    CCE27636.1 473 LIDQEDAKSFTLNEEITLMGWGNAFVRELPSEDPIKTMT-LELNIKGDFKSTDKKITW 529
                   567788888888889*************98887777776.999999998888888877 PP

>> tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.2   0.0   1.2e-41   6.9e-38       2     174 .]     423     600 ..     422     600 .. 0.87

  Alignments for each domain:
  == domain 1  score: 130.2 bits;  conditional E-value: 1.2e-41
  tRNA-synt_1c_C   2 pRymaVl..dpvkvtienlpeg.keeelevplhpknpelgtrkvpfskeiyiereDakrlkpgeevrLkelynikveevekdesgevtelkleyd 93 
                      R++a l  ++vkv++++ ++   + + ++p+hpknp++g+++v fs+ei+i++eDak+++ +ee++L++++n++v+e   ++  ++++l+l+++
      CCE27636.1 423 ARHTALLsdNMVKVKLTGAEAPsGVVTEQRPKHPKNPDVGMKDVVFSSEILIDQEDAKSFTLNEEITLMGWGNAFVRELPSEDPIKTMTLELNIK 517
                     5999999999*******98544578999***************************************************7665555556888888 PP

  tRNA-synt_1c_C  94 gesleearkkkg.iihWvsa..eeaveaevrlYdrLfkeee.de....dfllnpdslkvleeglaepalanlkkgdivQfeRiGyfrvd 174
                     g ++    k++  +i+W+sa   e+v+ae+  +d+L+++++ +e    +++lnp+++ v+ e++++  + +lkk+di+Q+eR+G++rvd
      CCE27636.1 518 G-DF----KSTDkKITWLSAegLEPVPAELWDFDYLITKDKlEEddnlEDFLNPNTSSVV-EAVCDGGVGKLKKDDIIQLERRGFYRVD 600
                     8.77....55555*******777899**********775554444446888******995.***************************8 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   3.1e-06     0.019      74     137 ..     160     222 ..      44     251 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.1e-06
                   HHHHHHHHHHHHHHHHTT----SB--BGGGGHHHHHHHHHHHHHTTSEEE-TTS-EEE-GGG-T CS
  tRNA-synt_1e  74 elaekfieefkkdleaLnvlkptleprvsekvdeiielvekliekgyaYavsdgdvyfdvskke 137
                   + +e+f ++  +dl+ +++++ ++ +  s++ d + ++ +kli+ g aYa + +++++  ++++
    CCE27636.1 160 KESEEFQDAIVEDLALMGIKP-DALTYTSDYFDYLYDMCKKLISMGKAYADDTDQETMRAQRMD 222
                   56788999999**99999976.88999***********************99988877766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4438.04
//
Query:       CCE27637.1  [L=478]
Description: related to MEVALONATE KINASE [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-16   58.3   0.0    1.7e-15   57.0   0.0    1.7  1  GHMP_kinases_N   GHMP kinases N terminal domain
      2e-08   34.5   0.0    4.4e-08   33.4   0.0    1.6  1  GHMP_kinases_C   GHMP kinases C terminal
     0.0042   16.6   0.0     0.0077   15.8   0.0    1.4  1  GalKase_gal_bdg  Galactokinase galactose-binding signature


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   2.8e-19   1.7e-15       3      65 ..     164     241 ..     163     242 .. 0.80

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 2.8e-19
                     EEEESSHTTSSSCHHHHHHHHHHHHHHHHTT...........EHHHH........HHHHHHHHHHHHHHHHHSHHHHHHHHS CS
  GHMP_kinases_N   3 vikseiPvgaGLGSSAAlavalvaAllallg...........lslee........aklaleaerlaqggngsggDvaasvyG 65 
                     +++s+iP++aGLGSSA++av++ aAll  l                e        +++a++ e +++ gn+sg+D+++++ G
      CCE27637.1 164 TLRSTIPISAGLGSSASIAVCASAALLIQLRtlsgphpdqpmE---EarlqleriNRWAFVYEMCIH-GNPSGVDNTVATQG 241
                     689**********************966553344455554440...244455669************.***********998 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   7.3e-12   4.4e-08       9      69 ..     327     385 ..     311     402 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 7.3e-12
  GHMP_kinases_C   9 dlellgellnlsqrselkavvgilppeleellealselGalgaklsGaGgGptvfalfkdk 69 
                     +l+ lgel+  ++   l+  +g+++p+le++ e++   G+   k++GaGgG++ ++l + +
      CCE27637.1 327 SLRKLGELMSINHG--LLVSLGVSHPRLEKVRELIDHEGVGWTKITGAGGGGCSITLLRPD 385
                     56789*********..8**************************************998544 PP

>> GalKase_gal_bdg  Galactokinase galactose-binding signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.3e-06    0.0077      11      47 ..      26      63 ..      19      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.3e-06
                     -.EEEEEEEEEEEE--S-TTTT-EEEEEEEEEEEEEEE CS
  GalKase_gal_bdg 11 p.fvasAPGRvnLiGEHtDYngGfVlpmAieqdiyiav 47
                     p f++sAPG v + GEH   +g   +++Ai ++ y+ v
       CCE27637.1 26 PaFMVSAPGKVIVFGEHSVVHGKAAIAAAISLRSYLHV 63
                     3599**************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3344.01
//
Query:       CCE27638.1  [L=117]
Description: uncharacterized protein CPUR_01112 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-26   90.2   0.0    8.6e-26   90.0   0.0    1.1  1  Apc13p    Apc13p protein


Domain annotation for each model (and alignments):
>> Apc13p  Apc13p protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   4.8e-30   8.6e-26      10      87 ..       1      77 [.       1      79 [. 0.95

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 4.8e-30
      Apc13p 10 ldashhailaeewnkdrLppddvavplekldpvrteeeedvvpddeaangnvkesqkekEpaWrdlnleeLesngpvv 87
                +++   a+l+e+++kd+Lp+d+++v  ++ +pv++e+e+dvvpd++aa+g+++++q+ +  aW+dl+l  L+++gp+ 
  CCE27638.1  1 MHRASDADLFEDFCKDKLPSDEIYVA-PQHQPVNPEDEDDVVPDQHAAFGIQRATQRLRQSAWKDLGLGALMRRGPGE 77
                6778889*******************.9999********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 945.39
//
Query:       CCE27639.1  [L=216]
Description: related to SPP30 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-42  143.6   0.0      4e-42  143.4   0.0    1.1  1  TRAPP     Transport protein particle (TRAPP) component


Domain annotation for each model (and alignments):
>> TRAPP  Transport protein particle (TRAPP) component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.0   2.2e-46     4e-42       1     145 [.      46     202 ..      46     203 .. 0.93

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 2.2e-46
       TRAPP   1 fafllgelvsylqrdskdveevekrLekmGyrvGlrllelllarerp....retdilevlkfickdlWkllfgkqidnlktn....hrgeyvltdnefp 91 
                 fa++++e+v+y+qr++k ++e+e+rL++ G+ +Gl+ll+lll+re p    r+++i+ +l+fi++++W++lfg+q+d l+++      +ey+++dne++
  CCE27639.1  46 FAYIFSEMVTYAQRRVKGIQELEQRLNTQGHPIGLKLLDLLLYREPPrsqlRPLTIIALLHFIKQNVWQHLFGRQADRLEKSnnpdTPDEYMIIDNEPL 144
                 789*****************************************755556699*****************************64444466********* PP

       TRAPP  92 ltrfvelpke...lsylaflcGiirGaLenlgfpakVtahelps.delrgrttfeikv 145
                 +++++++p+e   l+++a+++G+++G+++++ fpakVtah++ + d+++g+t+f++k+
  CCE27639.1 145 VNQYISVPREmsqLNCAAYVAGVVEGVCDGADFPAKVTAHTVGEgDMWPGKTVFLVKF 202
                 **********87777***************************999************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1759.51
//
Query:       CCE27640.1  [L=367]
Description: related to PDR16 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-39  133.2   0.1    9.1e-39  132.7   0.1    1.2  1  CRAL_TRIO    CRAL/TRIO domain
    1.7e-13   50.5   0.9    3.7e-13   49.4   0.9    1.6  1  CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
  ------ inclusion threshold ------
      0.063   13.4   0.0       0.11   12.7   0.0    1.3  1  CRAL_TRIO_2  Divergent CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   0.1   1.5e-42   9.1e-39       3     154 ..     118     259 ..     116     265 .. 0.96

  Alignments for each domain:
  == domain 1  score: 132.7 bits;  conditional E-value: 1.5e-42
   CRAL_TRIO   3 ileggkvgihgrDkegrpvlylrlgrfdpkklsleelvralvlvlerllkeleedgqvegvtvviDlkglslskmlwkpisllkkilkilqdnyperlg 101
                 ++e+gk++i g+Dk+grp+ yl++gr+++++    +++++l+++ er+ +++++  +ve++ ++i++k  + ++    p+s+++++l+ilq +yperlg
  CCE27640.1 118 EQETGKQIIVGFDKQGRPCQYLNPGRQNTDTNP--RQIHHLFYMVERVTDMMPP--GVEKLNLMINFKPSKQRQNTTVPVSTAREVLHILQSHYPERLG 212
                 6899**************************999..**************99999..***************99999999******************** PP

   CRAL_TRIO 102 kilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpk 154
                 k+li+n+P++++ +fk++kpf+ ++treK+kf+++      +++++++eql +
  CCE27640.1 213 KALIINVPWIVWGFFKIIKPFMHPVTREKLKFNED------MKQFVPAEQLWS 259
                 *********************************44......9********975 PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.9   6.2e-17   3.7e-13       6      54 .]      55      97 ..      36      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 6.2e-17
  CRAL_TRIO_N  6 lahlqeseyklteeekfWltredhddaclLRfLRArkwdvekAikrLed 54
                 ++h+++s++  t+ e++Wltre     clLR+LRA++w v++  +rL d
   CCE27640.1 55 KDHKEKSGPV-TDQERAWLTRE-----CLLRYLRATNWTVKESEQRLLD 97
                 4566777776.***********.....*******************975 PP

>> CRAL_TRIO_2  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.8e-05      0.11      50     113 ..     187     249 ..     148     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.8e-05
  CRAL_TRIO_2  50 senkpslswlkkvystlprrykknlkklyivhpstfvktllktvlsafvsskfrkkveyvsrle 113
                  ++++   s ++ v+++l+ +y+++l k  i++  + v  ++  + ++f+++  r+k+ + +  +
   CCE27640.1 187 QNTTVPVSTAREVLHILQSHYPERLGKALIINVPWIVWGFF-KIIKPFMHPVTREKLKFNEDMK 249
                  45677789999******************************.8999999**99***99977765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2972.71
//
Query:       CCE27641.1  [L=110]
Description: uncharacterized protein CPUR_01115 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 914.57
//
Query:       CCE27642.1  [L=569]
Description: uncharacterized protein CPUR_01116 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1546  (0.086229); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 3898.69
//
Query:       CCE27643.1  [L=1217]
Description: related to phosphatidylinositol phosphate phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-09   36.2   0.1    9.3e-09   35.1   0.1    1.6  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
      0.091   13.7   0.2       0.93   10.5   0.1    3.0  2  WD40           WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.1     1e-12   9.3e-09       2     233 .]     819    1137 ..     818    1137 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1e-12
                     EEEESTG........CHHHHTHHHHHHHHHHHHHHC.TTS..EEEEEEEBSCTCHHHHHHHHH............................... CS
                     xxxxxxx........xxxxxxxxxxxxxxxxxxxxx.xxx..xxxxxxxxxxxxxxxxxxxxx............................... RF
  Exo_endo_phos    2 twNvngq........aspalgssrrsdrladlltay.daD..vlgLQEvdddelsriplllal............................... 53  
                     twN +                   +    ++ll+++  +D  v g+QE+ d e        +                                
     CCE27643.1  819 TWNAGAStphsmrysD-------GDASFFKNLLQSSgSPDilVFGFQELVDLE-------DKTatakrlfkskkkegadqermshqyrdwrdfl 898 
                     7888887655444332.......3344578888888866633666***55555.......3333333466888888888888776666666666 PP

                     .........TTCEEEEECCH.....................................ECSSSTTSSEEEEEECSTE..EEEEEEEEEETSSSSG CS
                     .........xxxxxxxxxxx.....................................xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
  Exo_endo_phos   54 .........ggflgasstsp.....................................tgggggggnggavlsrfpl..tslfrrtfiefndlva 99  
                                                                              +g+gg +gn+ga+++rf++  tsl             
     CCE27643.1  899 lkslddympS---------NdlyhllhssplvglftcvfvksslrdrvrnlnaaevkRGMGGLHGNKGAIAIRFKVddTSL------------- 970 
                     6666664441.........04444446667777888888888999*******************************99999............. PP

                     CEEEEEEEEEEEEEEECCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEE............................................ CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................ RF
  Exo_endo_phos  100 alrreplaakleqlniashrdhdlvrdlqllalllqvealnadrgapviv............................................ 149 
                                                                    ++v                                            
     CCE27643.1  971 -----------------------------------------------CFVnchlaagqshansrhndiaaileaslfpterdpdlrldtftggg 1017
                     ...............................................88888888888888888888888888888888888888888888888 PP

                     .............EEE-SSSTSGGGBSCGHHHHHHCTTTHHSSCESCETTTTTTTTTTTEB-B............................... CS
                     .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................... RF
  Exo_endo_phos  150 .............aGDfNarpsdddsrvlrtrglalapapvglyllgggptptyvtraggsrl............................... 199 
                                   GD+N+                                          r+                               
     CCE27643.1 1018 dgsmildhelcilNGDLNY------------------------------------------RIdtmsrdtvvkaveqqqlakllerdqllvarr 1069
                     8888888888888******..........................................888888888889999999999999999999999 PP

                     ..........................................EEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                     ..........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  200 ..........................................DrilaspalalfrsgvlppplalvrrealtlSDH 233 
                                                               Dr+l+++       +    +l++ r+ ++ +SDH
     CCE27643.1 1070 rnptfrlrafeelpitfaptykydvgtdtydtsekrrspawcDRVLFRG-------QGRARQLDYTRH-EVRVSDH 1137
                     9999999*****************************************9.......667777777777.8899**9 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         2   1.8e+04      28      37 ..     688     697 ..     682     700 .. 0.74
   2 ?   10.5   0.1    0.0001      0.93       6      38 .]     749     788 ..     744     788 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2
                 EETTSEEEEE CS
        WD40  28 GsdDgtvriW 37 
                 G+ Dg+v ++
  CCE27643.1 688 GHVDGKVSVF 697
                 7788888775 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0001
                 EEESS.SSEEEEEEETTSSE......EEE.EETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgaw......las.GsdDgtvriWd 38 
                 ++ +H  sv  ++++++g++      ++s G  Dg+v+iWd
  CCE27643.1 749 EWQAHeHSVLKMKTDSSGPYrmdrlqVLSlGA-DGKVKIWD 788
                 5678865799999***********99565366.*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 8128.20
//
Query:       CCE27644.1  [L=143]
Description: uncharacterized protein CPUR_01118 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-24   83.0   2.4    1.4e-23   82.4   2.4    1.2  1  DUF4748   Domain of unknown function (DUF4748)


Domain annotation for each model (and alignments):
>> DUF4748  Domain of unknown function (DUF4748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   2.4   7.9e-28   1.4e-23       1      50 [.      36      85 ..      36      86 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 7.9e-28
     DUF4748  1 TvksiwlgWgslcvaGigayyfAKrsidadRaakleaerkrmrksnegeY 50
                T+ks+w+gWg+lc aG+gayyfAK++i+a+R+ak+ea++k++r+++eg Y
  CCE27644.1 36 TIKSVWYGWGVLCLAGGGAYYFAKQEINAERQAKVEAYNKKQRAIREGTY 85
                9***********************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1133.73
//
Query:       CCE27645.1  [L=562]
Description: uncharacterized protein CPUR_01119 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-14   54.7   0.2    3.9e-14   53.2   0.0    1.9  2  CTD_bind        RNA polymerase II-binding domain.
  ------ inclusion threshold ------
        2.1    6.5  10.2        2.9    6.1  10.2    1.1  1  CDC45           CDC45-like protein


Domain annotation for each model (and alignments):
>> CTD_bind  RNA polymerase II-binding domain.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.86   7.7e+03       7      19 ..      36      48 ..      30      64 .. 0.64
   2 !   53.2   0.0   4.4e-18   3.9e-14       1      62 [.      97     155 ..      97     156 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.86
    CTD_bind  7 LaNdvlqnskrkq 19
                L+N+ l +++r +
  CCE27645.1 36 LLNSALTQCSRPN 48
                6677777776655 PP

  == domain 2  score: 53.2 bits;  conditional E-value: 4.4e-18
    CTD_bind   1 kLnllYLaNdvlqnskrkqkdefapaFapvlpeafadayk..kapekikkklkrllniWeernv 62 
                 +L++lYL+Ndvl++     ++e+ ++++p++p +fa+a +  ++p+ + +kl++l+ +W+er++
  CCE27645.1  97 RLHILYLVNDVLHHH----RNELSSTWEPFFPALFASASSydNCPK-HTRKLEDLIGLWKERQY 155
                 8************94....379*****************9977776.***************98 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  10.2   0.00033       2.9     132     225 ..     325     417 ..     256     425 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00033
       CDC45 132 sdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee..sddddersrkrrrsepsakklrrqlkkerrkyeavlekyysqgts 225
                    +d++++ ++ +++++ +++++++ +++ + ++s+++++s+++++++   +d+++rsr+r+rs++s++   r++ + r++ +++ + + s+  s
  CCE27645.1 325 G--KDSHSKGSSVSRSSSPSRSRSRSLSRDGSYSRSRRRDSSSRSAKRRriPRDSRSRSRSRSRSRTSSRGISRSRTRSRSRSRSRTR-DRSRKRS 417
                 1..1212333333333333333333333333333322222233333333565566666666666665666666665555555444332.2333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.24s 00:00:01.00 Elapsed: 00:00:00.41
# Mc/sec: 4129.15
//
Query:       CCE27646.1  [L=255]
Description: uncharacterized protein CPUR_01120 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.068   11.3   0.0      0.087   10.9   0.0    1.1  1  Lant_dehydr_N  Lantibiotic dehydratase, N terminus


Domain annotation for each model (and alignments):
>> Lant_dehydr_N  Lantibiotic dehydratase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.8e-06     0.087     133     219 ..     118     203 ..     107     230 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.8e-06
  Lant_dehydr_N 133 ekegrayqevsvrateavravleaarepvtiaeLaerlaaefpeasaeeieal.ldeLveqglLvteLrppltgtdplghllerLeei 219
                    e++ r+++ + ++ ++++ ++ ++ar+++ ++e++ ++ a f+  s+ +i  l  ++L+ ++l+v++  p+lt+ + ++hl+++Le i
     CCE27646.1 118 EDGLRRAFPTMLEGQALLYYIRALARTSMAFDEIVLAIHAHFEPRSTWDIYMLrFQDLMLRNLIVCN--PHLTKNECFEHLIRQLEVI 203
                    5666778888899999**************************966666665554689**********..****************444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1998.16
//
Query:       CCE27647.1  [L=661]
Description: related to B56-delta regulatory subunit of protein phosphatase 2A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-191  636.8   2.6   1.8e-191  636.6   2.6    1.0  1  B56       Protein phosphatase 2A regulatory B subunit (B56 fa
    5.2e-05   23.2   1.3       0.27   11.1   0.0    2.4  2  Sec7_N    Guanine nucleotide exchange factor in Golgi transpo


Domain annotation for each model (and alignments):
>> B56  Protein phosphatase 2A regulatory B subunit (B56 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  636.6   2.6    2e-195  1.8e-191       1     415 []     182     591 ..     182     591 .. 0.98

  Alignments for each domain:
  == domain 1  score: 636.6 bits;  conditional E-value: 2e-195
         B56   1 lpslkdvppeereelflkklkqCsvvfdFndpssdlkekeiKretLkelveyvsnnrkkslkilteevyeeivkmisaNlfRplppsksnlldeaadpe 99 
                 lp +++vpp+ r++lf++k++qC+v+fdFnd+s d+k+keiKr +L+el++yv nnr+    ++te++y+++v+m+++NlfRp+pp + n+  ea+dpe
  CCE27647.1 182 LPGFHEVPPNRRQDLFMQKIDQCNVIFDFNDASGDMKAKEIKRLALHELLDYVANNRQ----VITEPMYPKVVDMFAKNLFRPIPP-PMNPQGEAFDPE 275
                 689****************************************************998....***********************7.455545669*** PP

         B56 100 edepvlepawpHlqlvYeillrfvespefdakvakkyidqsFvlkllelfdseDprERdylktilhriygkfldlrsfirkainniflrfiyeterhng 198
                 edepvle+awpH+q+vYe++lrf+es++f++++ak +id+sFvl+ll+lfdseDprERd+lkt+lhriygkfl+lrsfir++inn+f++f yeter+ng
  CCE27647.1 276 EDEPVLEVAWPHIQVVYEFFLRFIESQDFNTNTAKAHIDHSFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLNLRSFIRRSINNVFFQFTYETERFNG 374
                 *************************************************************************************************** PP

         B56 199 iaelLeilgsiingfalplkeehkkflervllpLhkvkslslyhqqLaycvvqfiekdpklaeevikgllkyWPitnsqKevlFLneleeileviepee 297
                 iaelLeilgsiingfalplkeehk+fl+rvllpLhk+ksls+yh+qLayc+vqf+ekd++l+e v+ gll+yWP+ ns+Kev+FLne+e+i+ev++p+e
  CCE27647.1 375 IAELLEILGSIINGFALPLKEEHKIFLTRVLLPLHKPKSLSMYHPQLAYCIVQFLEKDASLTEDVVLGLLRYWPKVNSTKEVMFLNEVEDIFEVMDPSE 473
                 *************************************************************************************************** PP

         B56 298 fqkilkplfkrlakcissphfqVaeralylwnnekivnlisenseeilpilfpaleknskkHWnktvrglalnvlkllmeldpelfdecaakykeekek 396
                 f k+++plf++lak++ sphfqVaeraly+wnne+++nl+s+n e ilpi+f  l++nsk HWn+t++g+++n++kl+me++p+lfd+c+++y+e++++
  CCE27647.1 474 FAKVQEPLFHQLAKSVASPHFQVAERALYFWNNEYFCNLVSDNVEIILPIMFAPLYENSKGHWNRTIHGMVYNAMKLFMEINPQLFDDCSHDYTEQQNT 572
                 *************************************************************************************************** PP

         B56 397 ekekkkkreekWkkieeaA 415
                 + e+++ re+kW+ ++e+A
  CCE27647.1 573 AGEREALRERKWAVLAEKA 591
                 ***************9987 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.3   4.3e-05      0.38      56     134 ..     349     428 ..     294     440 .. 0.81
   2 !   11.1   0.0     3e-05      0.27      47     127 ..     462     540 ..     455     556 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.3e-05
      Sec7_N  56 ellqllkqklcplLlknlsespsfpvferslrivllLlkkfrseLktEievflsllililles.dsslwqrvlaLeilrr 134
                 +l + ++  + ++ +++  e++ f+ +  +l+i+  +++ f   Lk+E ++fl+ ++l+l ++ + s+ +  la  i++ 
  CCE27647.1 349 NLRSFIRRSINNVFFQFTYETERFNGIAELLEILGSIINGFALPLKEEHKIFLTRVLLPLHKPkSLSMYHPQLAYCIVQF 428
                 5666778888888888888999999999********************************66644444555555555555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 3e-05
      Sec7_N  47 hgdvfr.khpellqllkqklcplLlknlsespsfpvferslrivllLlkkfrseLktEievflsllilillesdsslwqrvl 127
                  +d+f+   p+  + +++ l++ L k++ +sp+f+v er+l  ++   ++f + + + +e++l  ++ +l e+++  w+r +
  CCE27647.1 462 VEDIFEvMDPSEFAKVQEPLFHQLAKSV-ASPHFQVAERAL--YFWNNEYFCNLVSDNVEIILPIMFAPLYENSKGHWNRTI 540
                 5566663234446679************.*********876..4555799********************999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.37
# Mc/sec: 5287.83
//
Query:       CCE27648.1  [L=683]
Description: uncharacterized protein CPUR_01122 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-39  135.2   0.3    4.9e-39  134.3   0.3    1.5  1  Tau95        RNA polymerase III transcription factor (TF)IIIC
    1.2e-36  125.8   0.0      2e-36  125.0   0.0    1.4  1  Tau95_N      Tau95 Triple barrel domain
  ------ inclusion threshold ------
        1.2    7.2   5.1        1.7    6.8   5.1    1.1  1  Nop14        Nop14-like family
        1.6    8.1   5.2        2.3    7.5   5.2    1.2  1  SDA1         SDA1
        1.9    7.8   5.8        2.7    7.3   5.8    1.1  1  BUD22        BUD22
        3.6    6.9   8.4         34    3.7   8.3    2.1  2  CobT         Cobalamin biosynthesis protein CobT
        7.8    6.2   6.6         15    5.2   6.6    1.4  1  DUF4637      Domain of unknown function (DUF4637)


Domain annotation for each model (and alignments):
>> Tau95  RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.3   0.3   1.9e-42   4.9e-39       1     140 []     230     373 ..     230     373 .. 0.87

  Alignments for each domain:
  == domain 1  score: 134.3 bits;  conditional E-value: 1.9e-42
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX-----EE-...--S--TT-----...HHHHHHHHHHHHHHHH-SEEEHHHHHTTS-GGGT CS
       Tau95   1 llpPplFsridlpfnykykqnplskvvk.kklvntsksrkkktivlk...PtepeeelvkelkekkelqkaveelkklfeerPiwtrraLknklekker 95 
                 +lpPp+F++++lpfny y+qnp++++++      + ++ k+  +++    P    ++++++++ ++++ + ++ l+++f+ rPiwtrr+L+n+l+ k +
  CCE27648.1 230 ILPPPIFTHMSLPFNYFYSQNPYVRTTEdG-GTFNLTAVKQVGHFIGaedPAPSGPQIPPDMT-DPRMLQVMADLEDAFQVRPIWTRRSLMNHLHGKLQ 326
                 69***********************99963.33333345555555555778888889999887.5888999999*********************7777 PP

                 ..TTHHHHGGGTEEEE-SSTTTTEEEETT--TTS-GGGGGG-EEE-- CS
       Tau95  96 ..kklklalpyvaYyfksGPWrdlwvrfGyDPrkdpeariYQtldfr 140
                   ++lk++l y+aY+fk GPWrd+++ +G+DPr+dp++riYQtl+f+
  CCE27648.1 327 swNELKKYLNYAAYQFKGGPWRDSVIPYGLDPRTDPKYRIYQTLMFK 373
                 799*******************************************7 PP

>> Tau95_N  Tau95 Triple barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.0   7.9e-40     2e-36       2     126 ..      41     190 ..      40     191 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 7.9e-40
                 EEEESS--SSHHHHHHTTT-HHHHHHHHHHHHH-G--EE-S-TT-TT---EE-EEE----EEEEE.......ETTTT...................... CS
     Tau95_N   2 aveyPgivknvdkaietlgglekiskalkasekkkslelrlrpedpfshpilgeraptnnlllkvtvpkrtgkkrkrgsse.................. 82 
                 ave+P+iv+nvd+ i+ +g +++++++l++ +++  ++l+l+pe pf++p+++++a+++n++lkvtvpkrtg++rk+gs+                   
  CCE27648.1  41 AVEIPAIVENVDRTIKAFGRNATLAHVLDPTRNS--IPLYLNPESPFCKPLMSHNAASHNVVLKVTVPKRTGRRRKKGSKGpwqgdvdmsdtlaaadge 137
                 8*****************************9997..*******************************************99****************** PP

                 ...............................EEEEEEEEEEEEE-TTSGGG-- CS
     Tau95_N  83 .........sekekdssakelrslednkkkykievvGviektvrFremaDFqy 126
                          s ++ d+++ ++r+l+dn ++y++e+vG+i++t+rFr++aDF +
  CCE27648.1 138 ngtekgpvkSVARLDDPRILRRKLQDNVGEYEVEAVGIIKHTHRFRALADFYW 190
                 ********999999*************************************76 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.1   0.00066       1.7     351     408 ..     575     606 ..     555     652 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00066
       Nop14 351 deddfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeeed 408
                 +e+++         + eeee+e +                 d++ + d+e+ eeeeed
  CCE27648.1 575 EEENE---------GGEEEEDEGDA----------------DDSGSGDEEE-EEEEED 606
                 11111.........11111111111................1111111111.111111 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.2   0.00091       2.3     137     172 ..     573     607 ..     554     668 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00091
        SDA1 137 edeeeeeeeeeekee.keeeeeeeeeeeeeeeeeeee 172
                 + eee+e  eee++e + +++ +   +eeeeeeee++
  CCE27648.1 573 DAEEENEGGEEEEDEgDADDSGSG--DEEEEEEEEDD 607
                 222222211111111011111111..11111111111 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   5.8     0.001       2.7     166     221 ..     575     651 ..     522     676 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.001
       BUD22 166 eeesdkeeesedsedeekeeseddeeeeeededdedaee............................deedeeaeerelaqydg 221
                 eee++  ee+ed+ d  +++ + deeeeee+edd    +                            d     +++++   yd+
  CCE27648.1 575 EEENEGGEEEEDEGD-ADDSGSGDEEEEEEEEDDG---DytqghvypplggeygghpyhsdpyqphrD---HHYQQENEYGYDH 651
                 122222333333333.1222222222222222222...234466888888888888887777764330...3333333333443 PP

>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.1   2.7e+02      33      59 ..     493     520 ..     483     522 .. 0.83
   2 ?    3.7   8.3     0.013        34     223     255 ..     575     607 ..     567     661 .. 0.60

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.1
        CobT  33 pglsge.rvrlpepsrklsaeevaavRG 59 
                 p++s + +++lp p  +l++ee +++RG
  CCE27648.1 493 PSRSASyTFHLPLPDLNLTDEELTLLRG 520
                 4555555999****************** PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.013
        CobT 223 eeeeeeseeeeeegedddkeeqeeaaseeeeee 255
                 eee+e  eeee+eg++dd+ + +e+++eeee++
  CCE27648.1 575 EEENEGGEEEEDEGDADDSGSGDEEEEEEEEDD 607
                 222222221122222222222222222222222 PP

>> DUF4637  Domain of unknown function (DUF4637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.6     0.006        15      21      68 ..     573     620 ..     567     626 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.006
     DUF4637  21 eaeeeseeedeeedraeeesaaegeeesreaeeaegrekgsvsysPlr 68 
                 +aeee+e  +eeed+ + + +  g+ee++e ee++g   +   y Pl 
  CCE27648.1 573 DAEEENEGGEEEEDEGDADDSGSGDEEEEEEEEDDGDYTQGHVYPPLG 620
                 334444444444444555555666666666677777766777788886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.38
# Mc/sec: 5384.24
//
Query:       CCE27649.1  [L=577]
Description: related to zinc finger DHHC domain containing protein 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-40  136.4   7.8      1e-39  135.7   7.8    1.4  1  DHHC            DHHC palmitoyltransferase
  ------ inclusion threshold ------
      0.026   14.2   1.1      0.026   14.2   1.1    2.1  2  Yip1            Yip1 domain
       0.16   10.0   6.6       0.22    9.6   6.6    1.2  1  Sporozoite_P67  Sporozoite P67 surface antigen
       0.67    8.0   4.6       0.96    7.5   4.6    1.1  1  FSA_C           Fragile site-associated protein C-terminus


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   7.8   2.3e-43     1e-39       3     132 ..     106     232 ..     104     234 .. 0.95

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 2.3e-43
        DHHC   3 kelkfCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkkllsilllv 101
                  e++fC++c+ +kp+r++Hc++C+rcvl++DHhCpwl +ciG rN+k Fllflly++l++++a+ ++   ++++v +e+ ++f+++   +    ++l v
  CCE27649.1 106 GETRFCKKCQARKPDRAHHCSTCRRCVLKMDHHCPWLATCIGLRNHKSFLLFLLYTTLFCVYAFAVSGSWVWSEVIQEEVQQFENMLPVN---FVVLSV 201
                 6899****************************************************************************9999998876...688999 PP

        DHHC 102 lsllfllllgllllfhlylilrnlTtieamk 132
                 ls +++l++g+++  h++l+++++Ttie ++
  CCE27649.1 202 LSGIIGLVVGIFTGWHVMLACKGQTTIECLE 232
                 9**************************9765 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   1.1      0.14   6.4e+02      33      82 ..      21      71 ..      16      79 .. 0.72
   2 ?   14.2   1.1   5.9e-06     0.026      26      97 ..     155     228 ..     143     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.14
        Yip1 33 tlllgllaslnlgqtlasg.eevqgltlssllgaiiggylglllgllllal 82
                +l++++ +++++ +++ +  + +++ +++   +++ig++l++ll +   ++
  CCE27649.1 21 PLIFVYGLTTWAVWVVVEIgMKAPERSWLGSGSSAIGLALYGLLNWSYTTA 71
                566666666666666666667788888888888888888888877755555 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 5.9e-06
        Yip1  26 llllalltlllgllaslnlgqtlasg..eevqgltlssllgaiiggylglllgllllalllhliakllggkgsf 97 
                 ll+l+ +tl+++++++   +++ ++   eevq+++++ ++  +++++l +++gl++  +  ++++ +++g++++
  CCE27649.1 155 LLFLLYTTLFCVYAFAVSGSWVWSEViqEEVQQFENMLPVNFVVLSVLSGIIGLVVGIFTGWHVMLACKGQTTI 228
                 6777777888888888555666666677799******************9999999999999998888888875 PP

>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   6.6   4.9e-05      0.22     252     319 ..     469     535 ..     419     559 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 4.9e-05
  Sporozoite_P67 252 eeeenksiepgvGvpGvrvgaatssssttspssstttttpassgpsaqgshgsssrnavtrstdsisg 319
                     + ++++++e      G +  a+t++s++ts+s+st+tt  ++s   ++ ++g    +  +r  d +s+
      CCE27649.1 469 DYDDDEVVEHATETDGFTTTATTATSTSTSTSTSTSTTSRSTSH-RNKSTEGEEDTTRPSRPLDVVSN 535
                     33567788999999999999999999999999998888776666.67777777777777777777764 PP

>> FSA_C  Fragile site-associated protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.6   0.00021      0.96     574     622 ..     481     529 ..     442     543 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00021
       FSA_C 574 ndatsstiasaatasslsstkstvtivvstndskdgaklgpdtatpsfd 622
                 ++ + +t+a++at++s+s++ st t+  st++ + +++   dt+ ps  
  CCE27649.1 481 ETDGFTTTATTATSTSTSTSTSTSTTSRSTSHRNKSTEGEEDTTRPSRP 529
                 2223333444444444444444444444666666666677788888743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1354  (0.0755201); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.38
# Mc/sec: 4516.20
//
Query:       CCE27650.1  [L=291]
Description: uncharacterized protein CPUR_01124 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-14   51.4  19.3     0.0086   16.5   0.0    5.6  5  zf-C2H2         Zinc finger, C2H2 type
    2.3e-13   49.7  18.8      0.012   16.4   0.1    5.6  5  zf-C2H2_4       C2H2-type zinc finger
    7.9e-09   35.6   8.0     0.0033   17.7   0.1    4.6  4  zf-C2H2_jaz     Zinc-finger double-stranded RNA-binding
    2.7e-06   27.6   6.5      0.014   15.8   0.1    4.5  4  zf-met          Zinc-finger of C2H2 type
    4.4e-05   23.3  12.9      0.092   12.8   0.3    4.5  4  zf-C2H2_6       C2H2-type zinc finger
    0.00025   21.3  15.0      0.045   14.1   0.1    4.6  5  zf-C2H2_2       C2H2 type zinc-finger (2 copies)
    0.00074   19.8   7.4       0.02   15.2   1.1    2.8  2  zf-C2H2_8       C2H2-type zinc ribbon
     0.0021   18.1  12.9      0.011   15.8   0.4    3.9  4  Zn-ribbon_8     Zinc ribbon domain
     0.0051   17.1  15.8       0.28   11.5   0.2    4.4  3  zf-Di19         Drought induced 19 protein (Di19), zinc-bindi
  ------ inclusion threshold ------
      0.012   16.0   0.2      0.012   16.0   0.2    5.3  5  zf-H2C2_2       Zinc-finger double domain
       0.02   15.1   0.7       0.02   15.1   0.7    3.2  3  IBR             IBR domain, a half RING-finger domain
      0.031   14.4   0.1         48    4.2   0.0    3.5  3  zf_ZIC          Zic proteins zinc finger domain
       0.05   13.6   8.9        5.5    7.1   0.0    4.0  4  Elf1            Transcription elongation factor Elf1 like
       0.06   12.5   1.5        2.2    7.4   0.0    2.8  3  Actin_micro     Putative actin-like family
      0.065   13.4   0.2      0.065   13.4   0.2    2.5  2  FANCL_C         FANCL C-terminal domain
      0.089   12.6   4.7        1.1    9.0   0.4    2.5  2  Spt46           Spermatogenesis-associated protein 46
      0.089   13.5   3.7         17    6.1   1.9    3.3  3  zf-C2H2_3rep    Zinc finger C2H2-type, 3 repeats
       0.12   11.9   0.0       0.23   11.0   0.0    1.4  1  MR_MLE_C        Enolase C-terminal domain-like
        0.2   11.6   6.2       0.58   10.0   0.3    3.5  4  zf-C2H2_9       C2H2 type zinc-finger (1 copy)
        0.2   11.5   3.1        1.9    8.4   0.6    3.6  3  HNH_5           HNH endonuclease
       0.21   12.4   9.6         10    7.0   0.2    3.1  2  zinc_ribbon_15  zinc-ribbon family
       0.43   11.1  11.4        2.4    8.7   0.1    3.7  3  zf-C2HE         C2HE / C2H2 / C2HC zinc-binding finger
       0.58   10.8  11.2        3.1    8.5   0.0    4.2  4  FOXP-CC         FOXP coiled-coil domain
        1.8    8.5  16.2        7.1    6.6   0.1    4.4  3  zf-C2HC_2       zinc-finger of a C2HC-type
        1.9    9.2   7.6        8.3    7.1   0.2    2.7  2  DUF2946         Protein of unknown function (DUF2946)
        2.2    8.4  13.0        2.9    8.0   0.3    3.8  4  zf-CHCC         Zinc-finger domain
        2.7    7.7   7.6        0.8    9.4   0.1    2.7  3  DUF2225         Uncharacterized protein conserved in bacteria
        5.2    7.1  10.8         29    4.7   5.3    3.2  2  HypA            Hydrogenase/urease nickel incorporation, meta
        7.1    6.7   9.0        1.5    8.9   0.1    2.6  3  zf-C2H2_aberr   Aberrant zinc-finger
        8.9    6.5   9.8        3.1    8.0   3.5    2.9  2  zf-met2         Zinc-binding


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   1.2    0.0001     0.062       2      20 ..      10      28 ..       9      30 .. 0.92
   2 !    7.7   1.6    0.0088       5.3       3      23 .]      42      63 ..      40      63 .. 0.95
   3 !   10.8   0.0   0.00089      0.53       3      20 ..      71      89 ..      69      91 .. 0.93
   4 !   16.5   0.0   1.4e-05    0.0086       1      23 []     183     209 ..     183     209 .. 0.92
   5 !   11.9   0.2   0.00041      0.24       1      19 [.     214     232 ..     214     234 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.0001
                EETTTTEEESSHHHHHHHH CS
     zf-C2H2  2 kCpdCgksFkrksnLkrHi 20
                +C+ C+++F+++++L +H 
  CCE27650.1 10 RCKACDRTFPSSESLLQHK 28
                8*****************6 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0088
                ETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  3 CpdCgksFkrksnLkrHirt.H 23
                C +Cg  Fk+    ++H +t H
  CCE27650.1 42 CQVCGLDFKTDAAQRHHVQTkH 63
                ******************9999 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00089
                ETTTT.EEESSHHHHHHHH CS
     zf-C2H2  3 CpdCg.ksFkrksnLkrHi 20
                Cp+Cg  +F+r s+L+ Hi
  CCE27650.1 71 CPGCGsGPFPRVSHLMEHI 89
                ******************9 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 1.4e-05
                 EEET..TTTEEESSHHHHHHHHHC..C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt..H 23 
                 y Cp   Cgk++k +  L +H+r+  H
  CCE27650.1 183 YICPkpRCGKVYKASGGLIAHLRSnaH 209
                 889*******************98666 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 0.00041
                 EEETTTTEEESSHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrH 19 
                 y+Cp+C+k F++     +H
  CCE27650.1 214 YRCPYCSKLFNNLTAISSH 232
                 9**********99988888 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   1.3   0.00011     0.066       2      20 ..      10      28 ..       9      31 .. 0.91
   2 !   11.0   1.5    0.0011      0.63       2      24 .]      41      63 ..      40      63 .. 0.93
   3 ?    7.1   0.0      0.02        12       3      21 ..      71      90 ..      70      91 .. 0.94
   4 !    9.9   0.0    0.0024       1.4       1      21 [.     183     205 ..     183     206 .. 0.92
   5 !   16.4   0.1     2e-05     0.012       1      22 [.     214     235 ..     214     237 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 0.00011
   zf-C2H2_4  2 kCpiCgksFsskkaLlrHl 20
                +C+ C+++F+s+++Ll+H 
  CCE27650.1 10 RCKACDRTFPSSESLLQHK 28
                8*****************6 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0011
   zf-C2H2_4  2 kCpiCgksFsskkaLlrHlkthH 24
                 C +Cg  F++  a ++H++t H
  CCE27650.1 41 HCQVCGLDFKTDAAQRHHVQTKH 63
                6*********9999999***999 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.02
   zf-C2H2_4  3 CpiC.gksFsskkaLlrHlk 21
                Cp C +++F++ ++L  H++
  CCE27650.1 71 CPGCgSGPFPRVSHLMEHIE 90
                ******************86 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.0024
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlk 21 
                 ++Cp   Cgk+++ + +L  Hl+
  CCE27650.1 183 YICPKprCGKVYKASGGLIAHLR 205
                 7899999**************98 PP

  == domain 5  score: 16.4 bits;  conditional E-value: 2e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkt 22 
                 ++Cp+C+k F++ +a+++H+++
  CCE27650.1 214 YRCPYCSKLFNNLTAISSHVEA 235
                 89*****************986 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   5.6e-06    0.0033       4      21 ..      11      28 ..      10      29 .. 0.95
   2 ?    6.7   0.7     0.015         9       4      24 ..      42      62 ..      41      62 .. 0.96
   3 ?    3.6   0.0      0.15        89       7      26 ..     190     209 ..     190     209 .. 0.84
   4 !    8.8   0.1    0.0034         2       2      20 ..     214     232 ..     213     234 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.6e-06
                 BTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz  4 CvlCdKyFksenaldnHl 21
                 C++Cd++F s+++l +H+
   CCE27650.1 11 CKACDRTFPSSESLLQHK 28
                 *****************6 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.015
                 BTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz  4 CvlCdKyFksenaldnHlkSK 24
                 C++C   Fk++ a + H+ +K
   CCE27650.1 42 CQVCGLDFKTDAAQRHHVQTK 62
                 ***************999988 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.15
                  TTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkSKkH 26 
                  C K +k +  l +Hl+S +H
   CCE27650.1 190 CGKVYKASGGLIAHLRSNAH 209
                  777777777889*******9 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0034
                  CBBTTTTBBBSSHHHHHCC CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnH 20 
                  + C++C+K F++  a   H
   CCE27650.1 214 YRCPYCSKLFNNLTAISSH 232
                  89*********97776666 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.3e-05     0.014       3      19 ..      11      27 ..      10      29 .. 0.94
   2 ?    1.5   0.0      0.74   4.4e+02       2      12 ..      41      51 ..      40      57 .. 0.80
   3 ?    6.3   0.0     0.022        13       6      25 .]     190     209 ..     188     209 .. 0.93
   4 ?    4.2   0.3       0.1        62       1      19 [.     214     232 ..     214     234 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.3e-05
      zf-met  3 CelCnvtfnsesqlksH 19
                C++C++tf s  +l +H
  CCE27650.1 11 CKACDRTFPSSESLLQH 27
                ***************** PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.74
      zf-met  2 yCelCnvtfns 12
                +C +C   f+ 
  CCE27650.1 41 HCQVCGLDFKT 51
                8****888876 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.022
      zf-met   6 CnvtfnsesqlksHlqGKkH 25 
                 C ++++  + l++Hl++  H
  CCE27650.1 190 CGKVYKASGGLIAHLRSNAH 209
                 9999999999*******999 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.1
      zf-met   1 fyCelCnvtfnsesqlksH 19 
                 + C+ C + fn+ ++  sH
  CCE27650.1 214 YRCPYCSKLFNNLTAISSH 232
                 78999**********9999 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.5   0.00034      0.21       3      22 ..      10      29 ..      10      33 .. 0.91
   2 ?    2.9   0.2       0.2   1.2e+02       4      13 ..      42      51 ..      41      52 .. 0.90
   3 ?    2.0   0.1      0.37   2.2e+02       7      26 ..     190     211 ..     183     212 .. 0.79
   4 !   12.8   0.3   0.00015     0.092       2      16 ..     214     228 ..     213     232 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00034
   zf-C2H2_6  3 eCsvCsksFpslqaLggHkk 22
                +C+ C+++Fps  +L  Hk+
  CCE27650.1 10 RCKACDRTFPSSESLLQHKA 29
                6*****************96 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.2
   zf-C2H2_6  4 CsvCsksFps 13
                C+vC+  F++
  CCE27650.1 42 CQVCGLDFKT 51
                *****99986 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.37
   zf-C2H2_6   7 CsksFpslqaLggHkks..Hrk 26 
                 C+k+++    L+ H++s  H++
  CCE27650.1 190 CGKVYKASGGLIAHLRSnaHMD 211
                 9999998889999996646765 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 0.00015
   zf-C2H2_6   2 heCsvCsksFpslqa 16 
                 ++C++Csk F+ l+a
  CCE27650.1 214 YRCPYCSKLFNNLTA 228
                 9*********98877 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.4     0.019        12      50      71 ..       8      29 ..       4      35 .. 0.86
   2 ?    5.4   1.9     0.039        23      49      74 ..      38      63 ..      32      70 .. 0.77
   3 ?    1.7   0.0      0.52   3.1e+02      50      73 ..      68      92 ..      65     109 .. 0.85
   4 ?    3.2   0.0      0.19   1.1e+02      43      77 ..     176     211 ..     171     214 .. 0.77
   5 !   14.1   0.1   7.5e-05     0.045      38      73 ..     199     236 ..     192     253 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.019
   zf-C2H2_2 50 kleClyCekefkslealreHmk 71
                +++C  C+++f s e+l +H +
  CCE27650.1  8 ECRCKACDRTFPSSESLLQHKA 29
                689*****************65 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.039
   zf-C2H2_2 49 ekleClyCekefkslealreHmkkkg 74
                ++ +C +C+ +fk+ +a r+H+++k+
  CCE27650.1 38 DHIHCQVCGLDFKTDAAQRHHVQTKH 63
                5689********88777777777664 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.52
   zf-C2H2_2 50 kleClyCeke.fkslealreHmkkk 73
                kl C  C++  f  +++l+eH+++ 
  CCE27650.1 68 KLDCPGCGSGpFPRVSHLMEHIESG 92
                679****999999********9875 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.19
   zf-C2H2_2  43 lrekieekleCly..CekefkslealreHmkkkgHck 77 
                  ++ i++ ++C    C+k  k    l +H++++ H+ 
  CCE27650.1 176 YSKVISQ-YICPKprCGKVYKASGGLIAHLRSNAHMD 211
                 4455555.8896444****99**************86 PP

  == domain 5  score: 14.1 bits;  conditional E-value: 7.5e-05
   zf-C2H2_2  38 glleylrekiee..kleClyCekefkslealreHmkkk 73 
                 gl+ +lr++ +   +++C yC+k f++l a+ +H++  
  CCE27650.1 199 GLIAHLRSNAHMdkSYRCPYCSKLFNNLTAISSHVEAS 236
                 6777777654443399******************9765 PP

>> zf-C2H2_8  C2H2-type zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.1   3.3e-05      0.02      37      86 ..       8      59 ..       4      72 .. 0.85
   2 !    7.2   0.3    0.0099       5.9      27      88 ..     174     235 ..     154     242 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.3e-05
   zf-C2H2_8 37 rcstascaetfpsmqelvahtklhyk..pnryfkcencllrfrthrslfkhl 86
                +c +++c  tfps + l+ h   + k   + +++c+ c l f+t  +  +h+
  CCE27650.1  8 ECRCKACDRTFPSSESLLQHKAYKQKggAKDHIHCQVCGLDFKTDAAQRHHV 59
                59999***************9988883346799***********98766665 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0099
   zf-C2H2_8  27 ptqslegklfrcstascaetfpsmqelvahtklhykpnryfkcencllrfrthrslfkhlhv 88 
                   +s    ++ c  + c + + +   l+ah +   + ++ ++c  c   f    ++  h+  
  CCE27650.1 174 RYYSKVISQYICPKPRCGKVYKASGGLIAHLRSNAHMDKSYRCPYCSKLFNNLTAISSHVEA 235
                 45777778999***********************************9999888887777765 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   3.8      0.43   2.6e+02       7      33 ..      10      46 ..       8      46 .. 0.59
   2 !   15.8   0.4   1.8e-05     0.011       7      39 ..      41      82 ..      29      83 .. 0.85
   3 ?    4.7   0.4     0.056        34       6      33 ..     183     220 ..     182     226 .. 0.68
   4 ?    5.4   0.1     0.034        20       6      22 ..     214     230 ..     212     241 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.43
  Zn-ribbon_8  7 rCeeCghefe..........vlqsisdap.....ltaCPeCg 33
                 rC++C+++f             q     +      ++C  Cg
   CCE27650.1 10 RCKACDRTFPssesllqhkaYKQ-----KggakdHIHCQVCG 46
                 8*******987777444432222.....23333255577776 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.8e-05
  Zn-ribbon_8  7 rCeeCghefe.......vlqsisdaplta.CPeCgs.evrrv 39
                 +C+ Cg +f        ++q+ + ++l+  CP Cgs +  rv
   CCE27650.1 41 HCQVCGLDFKtdaaqrhHVQTKHPKELKLdCPGCGSgPFPRV 82
                 6***********999888887774456666******999886 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.056
  Zn-ribbon_8   6 YrCee..Cghefe.......vlqsisdaplta.CPeCg 33 
                  Y C +  Cg+++        +l+s +  ++   CP C 
   CCE27650.1 183 YICPKprCGKVYKasggliaHLRSNAHMDKSYrCPYCS 220
                  66776668888888888877666666555566688885 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.034
  Zn-ribbon_8   6 YrCeeCghefevlqsis 22 
                  YrC  C + f+ l +is
   CCE27650.1 214 YRCPYCSKLFNNLTAIS 230
                  ***********887776 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   5.0       0.2   1.2e+02       5      53 ..      11      63 ..       8      64 .. 0.69
   2 ?    4.9   0.1     0.054        32       3      23 ..      69      91 ..      67      95 .. 0.81
   3 !   11.5   0.2   0.00047      0.28       2      22 ..     213     234 ..     212     237 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.2
     zf-Di19  5 CPyCgke.ltvkeLveHvedeHrvesk.evvCPvCaekvtkdlva..Hltleh 53
                C  C ++  + ++L++H   + +  +k    C vC    + d ++  H++++h
  CCE27650.1 11 CKACDRTfPSSESLLQHKAYKQKGGAKdHIHCQVCGLDFKTDAAQrhHVQTKH 63
                55677752466788888777666666625669999988777777766888888 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.054
     zf-Di19  3 ftCPyCgke..ltvkeLveHved 23
                + CP Cg +    v+ L+eH+e+
  CCE27650.1 69 LDCPGCGSGpfPRVSHLMEHIES 91
                57******55457889****986 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00047
     zf-Di19   2 sftCPyCgk.eltvkeLveHve 22 
                 s+ CPyC+k   + +++ +Hve
  CCE27650.1 213 SYRCPYCSKlFNNLTAISSHVE 234
                 89*******4456677888887 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   2.6       1.7     1e+03      17      24 ..      11      18 ..       9      20 .. 0.90
   2 ?    2.4   0.3       0.4   2.4e+02       5      26 .]      27      51 ..      23      51 .. 0.62
   3 ?    5.0   1.3      0.06        36       5      21 ..      58      75 ..      55      77 .. 0.77
   4 ?   -1.0   0.2       4.8   2.8e+03      17      25 ..     185     195 ..     180     196 .. 0.77
   5 ?   16.0   0.2   2.1e-05     0.012       2      26 .]     200     225 ..     199     225 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.7
   zf-H2C2_2 17 CplCdkaF 24
                C++Cd +F
  CCE27650.1 11 CKACDRTF 18
                *******9 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.4
   zf-H2C2_2  5 Hir.kHtge.kp.yeCplCdkaFkt 26
                H + k +g  k   +C +C+  Fkt
  CCE27650.1 27 HKAyKQKGGaKDhIHCQVCGLDFKT 51
                554345533133479****999986 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.06
   zf-H2C2_2  5 Hir.kHtgekpyeCplCd 21
                H   kH++e ++ Cp C+
  CCE27650.1 58 HVQtKHPKELKLDCPGCG 75
                566369999999*****7 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 4.8
   zf-H2C2_2  17 Cp..lCdkaFk 25 
                 Cp   C+k++k
  CCE27650.1 185 CPkpRCGKVYK 195
                 66446999997 PP

  == domain 5  score: 16.0 bits;  conditional E-value: 2.1e-05
   zf-H2C2_2   2 LrrHir.kHtgekpyeCplCdkaFkt 26 
                 L  H+r + + +k y Cp+C+k F++
  CCE27650.1 200 LIAHLRsNAHMDKSYRCPYCSKLFNN 225
                 66799955677899********9987 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   5.3      0.94   5.6e+02      24      51 ..      12      52 ..       5      71 .. 0.63
   2 ?   -0.1   0.3       1.8   1.1e+03      18      28 ..      68      76 ..      52      96 .. 0.65
   3 ?   15.1   0.7   3.4e-05      0.02      20      57 ..     184     232 ..     169     240 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.94
         IBR 24 pdCeaiiekseg..cks............vtCskCgfefCfn 51
                + C++ + +se+  + +            ++C+ Cg +f ++
  CCE27650.1 12 KACDRTFPSSESllQ-HkaykqkggakdhIHCQVCGLDFKTD 52
                466666644444321.1233344444445*******998555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.8
         IBR 18 lkwCprpdCea 28
                +  Cp  +C++
  CCE27650.1 68 KLDCP--GCGS 76
                56677..7764 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 3.4e-05
         IBR  20 wCprpdCeaiiekseg..cks..........vtCskCgfefCfnCkkewH 57 
                  Cp+p C+++++ s g    +           +C+ C++ f      + H
  CCE27650.1 184 ICPKPRCGKVYKASGGliA-HlrsnahmdksYRCPYCSKLFNNLTAISSH 232
                 5**********77777740.2334445555588*******9876655555 PP

>> zf_ZIC  Zic proteins zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.12        70      21      37 ..      11      27 ..       4      35 .. 0.77
   2 ?    2.1   0.0      0.35   2.1e+02      20      38 ..     186     204 ..     180     209 .. 0.87
   3 ?    4.2   0.0     0.081        48      22      38 ..     217     233 ..     208     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.12
                -------BSSHHHHHHH CS
      zf_ZIC 21 kkpCsktFstmhelVtH 37
                 k C++tF +   l  H
  CCE27650.1 11 CKACDRTFPSSESLLQH 27
                599*****998888777 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.35
                 S-------BSSHHHHHHHH CS
      zf_ZIC  20 pkkpCsktFstmhelVtHl 38 
                 pk  C+k+++    l++Hl
  CCE27650.1 186 PKPRCGKVYKASGGLIAHL 204
                 8999******999999998 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.081
                 ------BSSHHHHHHHH CS
      zf_ZIC  22 kpCsktFstmhelVtHl 38 
                   Csk F+ +  + +H+
  CCE27650.1 217 PYCSKLFNNLTAISSHV 233
                 57**************9 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.5       1.2   6.9e+02      44      58 ..       7      21 ..       3      29 .. 0.76
   2 ?    6.7   1.5     0.012       7.2      36      60 ..      28      54 ..      10      59 .. 0.72
   3 ?    1.8   0.1      0.41   2.4e+02       7      29 ..      54      76 ..      50      83 .. 0.75
   4 ?    7.1   0.0    0.0092       5.5      12      49 ..     204     241 ..     200     257 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.2
        Elf1 44 aevsCkvCgesfetk 58
                +e +Ck C  +f ++
  CCE27650.1  7 GECRCKACDRTFPSS 21
                7899****9988765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.012
        Elf1 36 kldkkek..iaevsCkvCgesfetkvn 60
                k  k+++  + +++C+vCg++f+t++ 
  CCE27650.1 28 KAYKQKGgaKDHIHCQVCGLDFKTDAA 54
                444555545779**********99865 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.41
        Elf1  7 akkrkkkkkkklptkFdCpfCnh 29
                a++++ ++k++ + k dCp C++
  CCE27650.1 54 AQRHHVQTKHPKELKLDCPGCGS 76
                4455666677788899*****86 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0092
        Elf1  12 kkkkkklptkFdCpfCnheksvevkldkkekiaevsCk 49 
                  +++ +++++++Cp+C++       ++   +  +v+C+
  CCE27650.1 204 LRSNAHMDKSYRCPYCSKLFNNLTAISSHVEASSVNCR 241
                 567778**********9976666666666777777776 PP

>> Actin_micro  Putative actin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.6      0.37   2.2e+02     224     248 ..       7      32 ..       4      41 .. 0.72
   2 ?    7.4   0.0    0.0037       2.2     224     251 ..      38      82 ..      33     143 .. 0.74
   3 ?    2.2   0.0      0.14        83     221     248 ..     209     237 ..     203     284 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.37
  Actin_micro 224 kefsCkvCdvkfev.ekiseHllkkH 248
                   e +Ck Cd  f + e++ +H   k 
   CCE27650.1   7 GECRCKACDRTFPSsESLLQHKAYKQ 32 
                  5789********99899999965543 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0037
  Actin_micro 224 kefsCkvCdvkfev.ekiseHllkkHii................k 251
                   ++ C+vC+  f++     +H+++kH +                 
   CCE27650.1  38 DHIHCQVCGLDFKTdAAQRHHVQTKHPKelkldcpgcgsgpfprV 82 
                  5789**********555667899***9866666666666666662 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.14
  Actin_micro 221 kekkefsCkvCdvkfev.ekiseHllkkH 248
                  + +k ++C  C+  f+    is H++ + 
   CCE27650.1 209 HMDKSYRCPYCSKLFNNlTAISSHVEASS 237
                  568999*******9999999****98765 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.5         7   4.2e+03       3       8 ..      40      45 ..       8      60 .. 0.63
   2 ?   13.4   0.2   0.00011     0.065      15      63 ..     177     221 ..     171     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 7
                -S-SSS CS
     FANCL_C  3 veCgiC 8 
                ++C +C
  CCE27650.1 40 IHCQVC 45
                344444 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00011
                 T-----B--S-TT----B-SG.GGHHHHHHHHSSS-TTT--EEE-TTT-S CS
     FANCL_C  15 sgevpdisCdnekCnkkfHsa.CLkeWlrslkesrqsfdvlfGeCPyCkk 63 
                 s  ++++ C  ++C+k + ++  L   lrs+ ++ +s+     +CPyC+k
  CCE27650.1 177 SKVISQYICPKPRCGKVYKASgGLIAHLRSNAHMDKSY-----RCPYCSK 221
                 5678999***********97637*************99.....5****97 PP

>> Spt46  Spermatogenesis-associated protein 46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.4    0.0019       1.1     180     218 ..       3      45 ..       1      54 [. 0.79
   2 ?    5.2   0.2     0.027        16     182     207 ..     210     235 ..     194     250 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0019
       Spt46 180 paqqsGykcaaccrlyptlkslkshi....kvGfkeGfsckvy 218
                 pa+    +c ac r +p+ +sl +h     k G k+   c+v 
  CCE27650.1   3 PAEDGECRCKACDRTFPSSESLLQHKaykqKGGAKDHIHCQVC 45 
                 8899999***************998533337788888999886 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.027
       Spt46 182 qqsGykcaaccrlyptlkslkshikv 207
                   + y+c  c +l+  l+++ sh+ +
  CCE27650.1 210 MDKSYRCPYCSKLFNNLTAISSHVEA 235
                 5678*******************975 PP

>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   1.9     0.029        17      91     125 ..      29      63 ..       8      64 .. 0.65
   2 ?    5.5   0.2     0.044        26      16      56 ..      51      93 ..      49     131 .. 0.76
   3 ?    3.3   0.0      0.22   1.3e+02      89     123 ..     201     235 ..     145     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.029
  zf-C2H2_3rep  91 nnsenesgvrkfvcrfcGlkfdllpdlGrhh.qaah 125
                    ++++ ++  +  c++cGl f+      rhh q++h
    CCE27650.1  29 AYKQKGGAKDHIHCQVCGLDFKTDAAQ-RHHvQTKH 63 
                   3445555666788********975554.55526655 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.044
  zf-C2H2_3rep 16 thvqerhhvqfve.qclllqcipcgsh.fgnaeelwlhvlsvh 56
                  t   +rhhvq    + l l c  cgs  f    +l+ h+ s  
    CCE27650.1 51 TDAAQRHHVQTKHpKELKLDCPGCGSGpFPRVSHLMEHIESGN 93
                  66779*****987245569******854999999999998755 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.22
  zf-C2H2_3rep  89 vennsenesgvrkfvcrfcGlkfdllpdlGrhhqa 123
                   + +  +n++  + + c +c   f+ l  +  h +a
    CCE27650.1 201 IAHLRSNAHMDKSYRCPYCSKLFNNLTAISSHVEA 235
                   55556778888999999999999999999888776 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00038      0.23     137     206 ..     203     273 ..     195     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00038
                 HHHHHHHHHHHTT-EEEEBSCSSHHHHHHHHHHHHTTTTBEEEEEEGGGGH...TSGCSBSSSSEEETTEEEC CS
    MR_MLE_C 137 earkvaalaeafgvpvapHsgsgglglaaslhlaaaipnllileyfldael...leeelleeplevedGrvtv 206
                  +r  a++ + +  p++     +   +a+s h+ a+  n++i e++ ++ +   l++ +++  +++++G+++ 
  CCE27650.1 203 HLRSNAHMDKSYRCPYCSKL--FNNLTAISSHVEASSVNCRIRESDGFNAYldqLTAGIVDAGTRDKHGTIQY 273
                 45556667777777766666..46789******99999************9999***************9985 PP

>> zf-C2H2_9  C2H2 type zinc-finger (1 copy)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1      0.17     1e+02       3      33 ..      10      40 ..       8      43 .. 0.92
   2 ?   -2.1   0.1       5.9   3.5e+03       4      16 ..      42      54 ..      39      63 .. 0.71
   3 ?   -2.0   0.1       5.6   3.4e+03       4      21 ..      71      89 ..      70      93 .. 0.68
   4 ?   10.0   0.3   0.00097      0.58       3      22 ..     215     234 ..     213     241 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.17
                B-TTT--B-SSHHHHHHHHHHHTSSS--HHH CS
   zf-C2H2_9  3 lCPvCevkfnswkdlseHilsaasksdaeHv 33
                +C +C   f s ++l +H   +++   ++H+
  CCE27650.1 10 RCKACDRTFPSSESLLQHKAYKQKGGAKDHI 40
                699****************999999999998 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.9
                -TTT--B-SSHHH CS
   zf-C2H2_9  4 CPvCevkfnswkd 16
                C vC + f++ + 
  CCE27650.1 42 CQVCGLDFKTDAA 54
                9999999986444 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 5.6
                -TTT--B.-SSHHHHHHHH CS
   zf-C2H2_9  4 CPvCevk.fnswkdlseHi 21
                CP C    f  +++l eHi
  CCE27650.1 71 CPGCGSGpFPRVSHLMEHI 89
                9999764255777788887 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00097
                 B-TTT--B-SSHHHHHHHHH CS
   zf-C2H2_9   3 lCPvCevkfnswkdlseHil 22 
                 +CP C   fn+++ +s+H+ 
  CCE27650.1 215 RCPYCSKLFNNLTAISSHVE 234
                 7*****************84 PP

>> HNH_5  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.6    0.0031       1.9       1      51 [.      11      55 ..      11      62 .. 0.80
   2 ?   -1.9   0.0       5.2   3.1e+03      16      26 ..     182     192 ..     176     196 .. 0.81
   3 ?    0.3   0.1       1.1   6.7e+02       1      13 [.     216     228 ..     216     237 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0031
       HNH_5  1 CiyCgkeiaekelseeHIiPeslGGkltisnlvtlCkkCNqkkgqkvdaal 51
                C  C+++++++e   +H   + +GG ++   +   C+ C   ++++  aa 
  CCE27650.1 11 CKACDRTFPSSESLLQHKAYKQKGGAKD--HI--HCQVCGLDFKTD--AAQ 55
                8999999999999999999999999965..77..899999888654..433 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.2
       HNH_5  16 eHIiPeslGGk 26 
                 ++I P+ ++Gk
  CCE27650.1 182 QYICPKPRCGK 192
                 78999999998 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.1
       HNH_5   1 CiyCgkeiaekel 13 
                 C yC+k +++ ++
  CCE27650.1 216 CPYCSKLFNNLTA 228
                 9*****9887655 PP

>> zinc_ribbon_15  zinc-ribbon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   4.7     0.053        32      35      72 ..      37      75 ..       9      83 .. 0.81
   2 ?    7.0   0.2     0.017        10      35      75 ..     182     223 ..     172     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.053
  zinc_ribbon_15 35 kpylacskCkslleaskelgkeiekkesse.kkeCknCg 72
                    k  ++c+ C+  ++++  + +++++k+ +e k  C+ Cg
      CCE27650.1 37 KDHIHCQVCGLDFKTDAAQRHHVQTKHPKElKLDCPGCG 75
                    667899999999999998888888777777788999997 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.017
  zinc_ribbon_15  35 kpylacskCkslleaskelgkeiekkesse.kkeCknCgkev 75 
                     ++++   +C+++++as  l  +++++++++ +++C+ C+k  
      CCE27650.1 182 QYICPKPRCGKVYKASGGLIAHLRSNAHMDkSYRCPYCSKLF 223
                     56667789*********9999999888877799*****9865 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.4       3.2   1.9e+03      38      49 ..       9      20 ..       4      27 .. 0.80
   2 ?    6.3   1.6     0.022        13      23      60 ..      55      91 ..      16      92 .. 0.82
   3 ?    8.7   0.1     0.004       2.4      32      59 ..     208     234 ..     181     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 3.2
     zf-C2HE 38 LkCtrCganfgn 49
                 +C  C+++f++
  CCE27650.1  9 CRCKACDRTFPS 20
                58*****99976 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.022
     zf-C2HE 23 slseeqskelilktpLkCtrCganfgnkfpkLKeHLee 60
                ++++ q+k+  ++ +L C  Cg   +    +L eH+e+
  CCE27650.1 55 QRHHVQTKHP-KELKLDCPGCGSGPFPRVSHLMEHIES 91
                4566677778.999*********************985 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.004
     zf-C2HE  32 lilktpLkCtrCganfgnkfpkLKeHLe 59 
                   ++++ +C +C+ + +n++ +  +H e
  CCE27650.1 208 AHMDKSYRCPYCS-KLFNNLTAISSHVE 234
                 458999*******.999***99999986 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.6      0.15        91       4      42 ..       6      44 ..       5      51 .. 0.80
   2 ?    0.0   0.1       2.2   1.3e+03      10      28 ..      72      91 ..      70      98 .. 0.83
   3 ?    8.5   0.0    0.0051       3.1       6      34 ..     184     212 ..     179     217 .. 0.87
   4 ?    1.5   0.0       0.8   4.8e+02      10      28 ..     217     235 ..     213     241 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.15
     FOXP-CC  4 kgvCkWPgCekvledveeflkhlnseHalddkstaqlrv 42
                 g+C+   C++ + ++e++l+h   + + + k    ++v
  CCE27650.1  6 DGECRCKACDRTFPSSESLLQHKAYKQKGGAKDHIHCQV 44
                5899999***************87776666665555555 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 2.2
     FOXP-CC 10 PgC.ekvledveeflkhlns 28
                PgC +  +  v+++++h++s
  CCE27650.1 72 PGCgSGPFPRVSHLMEHIES 91
                999556899999****9986 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0051
     FOXP-CC   6 vCkWPgCekvledveeflkhlnseHaldd 34 
                 +C  P C kv + ++ +++hl+s+ ++d+
  CCE27650.1 184 ICPKPRCGKVYKASGGLIAHLRSNAHMDK 212
                 7999******************9988775 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.8
     FOXP-CC  10 PgCekvledveeflkhlns 28 
                 P C+k+++++++  +h++ 
  CCE27650.1 217 PYCSKLFNNLTAISSHVEA 235
                 99**************875 PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2     0.015       8.9       5      22 ..      11      29 ..      10      29 .. 0.89
   2 ?    4.7   0.1     0.049        29       4      20 ..      41      57 ..      40      62 .. 0.90
   3 ?    6.6   0.1     0.012       7.1       4      13 ..     215     224 ..     214     233 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.015
   zf-C2HC_2  5 CpkCgRsF.npdrlekHep 22
                C+ C R+F  +++l  H++
  CCE27650.1 11 CKACDRTFpSSESLLQHKA 29
                999*****99999999985 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.049
   zf-C2HC_2  4 pCpkCgRsFnpdrlekH 20
                 C+ Cg  F++d+ ++H
  CCE27650.1 41 HCQVCGLDFKTDAAQRH 57
                7***************9 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.012
   zf-C2HC_2   4 pCpkCgRsFn 13 
                  Cp+C+  Fn
  CCE27650.1 215 RCPYCSKLFN 224
                 6********7 PP

>> DUF2946  Protein of unknown function (DUF2946)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   1.2     0.051        30      41      71 ..      20      50 ..       4      62 .. 0.77
   2 ?    7.1   0.2     0.014       8.3      52      73 ..     205     226 ..     142     239 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.051
     DUF2946 41 aysaaytaagagspasamdseaCgyCsllaa 71
                ++++  ++ + ++ ++a d+ +C +C+l++ 
  CCE27650.1 20 SSESLLQHKAYKQKGGAKDHIHCQVCGLDFK 50
                5555666777789999***********9965 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.014
     DUF2946  52 gspasamdseaCgyCsllaagp 73 
                  s a+++ s  C+yCs l+++ 
  CCE27650.1 205 RSNAHMDKSYRCPYCSKLFNNL 226
                 4556666666*****9998754 PP

>> zf-CHCC  Zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.5     0.048        29      24      37 .]       5      18 ..       1      18 [. 0.91
   2 ?    3.1   0.1      0.17     1e+02      25      37 .]      37      49 ..      33      49 .. 0.84
   3 ?   -2.6   0.2       9.9   5.9e+03      29      34 ..      70      75 ..      62      76 .. 0.70
   4 ?    8.0   0.3    0.0048       2.9      26      37 .]     212     223 ..     207     223 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.048
                TTSEEEETTTTEEE CS
     zf-CHCC 24 kkgpvdCgYCglrF 37
                ++g+ +C+ C++ F
  CCE27650.1  5 EDGECRCKACDRTF 18
                799*********99 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.17
                TSEEEETTTTEEE CS
     zf-CHCC 25 kgpvdCgYCglrF 37
                k+   C+ Cgl F
  CCE27650.1 37 KDHIHCQVCGLDF 49
                66789*****998 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 9.9
                EETTTT CS
     zf-CHCC 29 dCgYCg 34
                dC+ Cg
  CCE27650.1 70 DCPGCG 75
                688787 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0048
                 SEEEETTTTEEE CS
     zf-CHCC  26 gpvdCgYCglrF 37 
                 +  +C+YC++ F
  CCE27650.1 212 KSYRCPYCSKLF 223
                 6679*****988 PP

>> DUF2225  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3       4.7   2.8e+03       5      19 ..       8      22 ..       6      33 .. 0.75
   2 ?    2.2   0.3      0.21   1.3e+02       3      28 ..      37      62 ..      36      75 .. 0.83
   3 ?    9.4   0.1    0.0013       0.8       2      35 ..     210     248 ..     209     256 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.7
     DUF2225  5 kieCPvCeekfkkkk 19
                +++C  C+++f + +
  CCE27650.1  8 ECRCKACDRTFPSSE 22
                799999*99997654 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.21
     DUF2225  3 kkkieCPvCeekfkkkkvkssslrli 28
                k +i+C vC   fk+ + +  +++++
  CCE27650.1 37 KDHIHCQVCGLDFKTDAAQRHHVQTK 62
                6689**********999888877765 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0013
     DUF2225   2 ykkkieCPvCeekfkkkkvkssslrli.....krdsdln 35 
                 ++k+++CP+C++ f++ +  ss++         r+sd +
  CCE27650.1 210 MDKSYRCPYCSKLFNNLTAISSHVEASsvncrIRESDGF 248
                 589************988877777665333334555555 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.3     0.048        29      70      94 ..      39      76 ..       3      86 .. 0.70
   2 ?    1.9   0.2      0.37   2.2e+02      87      95 ..     207     222 ..     176     240 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.048
                EEEETTTS-EEECHH.HHH.............S-TTTSS CS
        HypA 70 kvrCreCgkefelee.kal.............rCpkCgs 94
                +++C++Cg +f++++ +                Cp Cgs
  CCE27650.1 39 HIHCQVCGLDFKTDAaQ-RhhvqtkhpkelklDCPGCGS 76
                56777777777766532.134677888888888888887 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.37
                 H.......S-TTTSSS CS
        HypA  87 l.......rCpkCgsa 95 
                         rCp C++ 
  CCE27650.1 207 NahmdksyRCPYCSKL 222
                 0344444499999874 PP

>> zf-C2H2_aberr  Aberrant zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       7.3   4.4e+03     143     156 ..       9      22 ..       8      34 .. 0.58
   2 ?    3.2   0.6      0.15        87       7      41 ..      44      73 ..      36      97 .. 0.67
   3 ?    8.9   0.1    0.0025       1.5       1      60 [.     183     232 ..     183     266 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7.3
  zf-C2H2_aberr 143 CripGCgkrfkslm 156
                    Cr + C++ f s  
     CCE27650.1   9 CRCKACDRTFPSSE 22 
                    66666666665533 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.15
  zf-C2H2_aberr  7 aCdlkyssvlglrrhlveykhslytnsefslkCpv 41
                    C+l ++ +++ +rh v+ kh    ++e +l Cp 
     CCE27650.1 44 VCGLDFK-TDAAQRHHVQTKH----PKELKLDCPG 73
                   4777765.5666777778899....8889999984 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0025
  zf-C2H2_aberr   1 ykClykaCdlkyssvlglrrhlveykhslytnsefslkCpvrkCsesivelentelleeh 60 
                    y C+  +C+  y+ + gl  hl+   h   ++  +s +Cp+  Cs+ + +l++   + +h
     CCE27650.1 183 YICPKPRCGKVYKASGGLIAHLRSNAH---MD--KSYRCPY--CSKLFNNLTA---ISSH 232
                    789************************...44..5889**9..7667766665...4444 PP

>> zf-met2  Zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.8   4.8e+02       2       9 ..      11      18 ..      10      29 .. 0.80
   2 ?    8.0   3.5    0.0052       3.1       2      30 ..      42      67 ..      41      72 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.8
     zf-met2  2 CkiCrqtF 9 
                Ck C  tF
  CCE27650.1 11 CKACDRTF 18
                *******9 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0052
     zf-met2  2 CkiCrqtFmcTtkevlLkeHaenKHpKdt 30
                C++C   F +T +  + + H++ KHpK+ 
  CCE27650.1 42 CQVCGLDF-KTDA--AQRHHVQTKHPKEL 67
                99999999.4443..579*********84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 1871.26
//
Query:       CCE27651.1  [L=628]
Description: related to malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-91  304.5   0.0    9.9e-91  303.6   0.0    1.5  1  Malic_M   Malic enzyme, NAD binding domain
    1.3e-71  240.1   0.0    2.2e-71  239.4   0.0    1.3  1  malic     Malic enzyme, N-terminal domain


Domain annotation for each model (and alignments):
>> Malic_M  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.6   0.0   1.1e-94   9.9e-91       1     257 [.     312     583 ..     312     584 .. 0.95

  Alignments for each domain:
  == domain 1  score: 303.6 bits;  conditional E-value: 1.1e-94
                 THHHHHHHHHHHHHHHHHH-S-GGG--EEEEC-SHHHHHHHHHHHHHHHTTTS-HHHHHTTEEEEETTEE-BTT-.S---TTTGGGSBS--SS--S... CS
     Malic_M   1 iqgTaavalagllaalkitgkklseqkivvlGaGsagiGiaeqivealvkeGlseeeakkkiylvDrkGLltedr.ekleeekkpfakkkeelkeakdk 98 
                 iqgT+av l+g+++a++++g+++++q++v++GaGsag+G+a+q++e ++++G se+ea++k+ylvD+kGL+t+dr + l+e+kk fa+++++ ++    
  CCE27651.1 312 IQGTGAVILGGYIGAVNLSGVPIQDQRLVFMGAGSAGVGVAKQLLEYYTRRGFSEDEARSKFYLVDTKGLVTHDRgDTLAEHKKYFARTDNQGRQF--- 407
                 9**************************************************************************788*************99966... PP

                 .SHHHHHHHH--SEEEE-SSSSS-S-HHHHHHHHHHSS......S-EEEE--SSGGGSSS-HHHHHHHTTT-SEEEESS----EEE..T.........S CS
     Malic_M  99 ltLeevvkkvkptvliGlsgvagafteeivremakste......rPiilplSNPtskaEataedvlkwtdgkalvasGsPfkpvel..n.........g 180
                  tLeev+++v+p++l+Gl+++ g+fte+++r++++s++      rPi++plSNP skaE+t+e++++w+dg++++asGsPf+++++  +         +
  CCE27651.1 408 RTLEEVIAHVQPSALVGLAATYGIFTESVIRALKSSVDaggsgrRPILFPLSNPLSKAECTFEEAIQWSDGSVIFASGSPFESLTIktEgrgsggsaeE 506
                 8************************************9999**9**************************************99863332222222224 PP

                 EEE--EE--GGGTHHHHHHHHHHTT-SS--HHHHHHHHHHHHTT--HHHHHTT-SS--GGGHHHHHHHHHHHHHHHH CS
     Malic_M 181 ktyeigQaNNayifPglglgvivarakritdemllaaaealaelvseeelkegsllPelseirevslkvavavakaa 257
                 +ty+++Q+NN+y+fPglglg+i+a+a++itd+m++a+aeala ++++ee+++g ++P+++++re+s++va +v+kaa
  CCE27651.1 507 VTYHPNQGNNVYVFPGLGLGAILAKASHITDDMVYASAEALAGTLNAEEMQRGLIYPRIERVREASVAVAREVMKAA 583
                 69*************************************************************************98 PP

>> malic  Malic enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.4   0.0   2.4e-75   2.2e-71       3     182 .]     124     302 ..     122     302 .. 0.99

  Alignments for each domain:
  == domain 1  score: 239.4 bits;  conditional E-value: 2.4e-75
                 TECCCCCCHHCCCHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS.SS..EEEEE-SSSBTTTBS-GHHHHHHHHHHHHHHHH CS
       malic   3 knetlfykllkekleellpivYtPtvgeacqeyseeyrkarglylsikdkekikeilknlpeedvkvivvtdgeriLGlGdlGvagvgimvGKlaLyta 101
                 +n  lfy+ll++++++l+p+vYtPt+g++c +ys+ y+++++ly+si+++++i+++l+n+p +d +++vvtdg+riLGlGdlG++gvgi++GKl+Lyta
  CCE27651.1 124 ENTDLFYRLLMDNIRDLMPLVYTPTIGDVCLQYSSLYSRPEALYISITQRNSIRTMLRNWPCSDPEICVVTDGSRILGLGDLGMNGVGIPIGKLSLYTA 222
                 6889*********************************************************************************************** PP

                 HHS-EGGGEEEEEECS-BS.HHHHC.TT..S.SSB...SHHHHHHHHHHHHHHHHHHGCTSEEEE-S--CCHHHHHHHHHC CS
       malic 102 lagidPekvlpvvldvgtnneelledplYlGlrkkRvkgeeydefvdefveavkelfppkaliqfEDfkaknafeileryr 182
                 +agi+P+k+lp+vld+gtnne+ l+dplYlGlr+kR + e  +ef+def+eavke++ pk+++qfEDf++++af+ lery+
  CCE27651.1 223 AAGIHPSKTLPIVLDCGTNNESNLQDPLYLGLRQKRPSAEVQQEFMDEFMEAVKEVY-PKMVVQFEDFESQKAFNYLERYK 302
                 *********************************************************.9*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4518.55
//
Query:       CCE27652.1  [L=919]
Description: probable cutinase transcription factor 1 beta [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-29  103.1   4.3    2.1e-29  102.4   1.8    2.0  2  Fungal_trans  Fungal specific transcription factor domain
    4.8e-08   33.0   9.6    9.8e-08   32.0   9.6    1.5  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   1.8   2.3e-33   2.1e-29       2     265 ..     252     523 ..     251     525 .. 0.83
   2 ?    0.7   0.0     0.025   2.2e+02       8      24 ..     559     575 ..     554     589 .. 0.74

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 2.3e-33
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                   + + ++++p +p+++ ++fl+   + +++ + ++s ll  +i+  +  f+++ + ++   +++++    af+++ + l+  df ++ ++l  +qsL+
    CCE27652.1 252 QCYIEYVYPYMPLIDLHNFLSIV-DRRDGVNGQTSLLLYQSIMFSAVAFVDMKYLREAGYSSRKA-ARKAFFQKTRLLY--DFDYEQDRLVLVQSLM 344
                   6688999****************.899999999999999******************99999998.8899*********..**************** PP

  Fungal_trans  99 llelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwes 195
                    + ++  t +d++  + ++gva++la+++gLhrnp   +       +  ++  ++R+ww++F+ D+++al ++rp  ++d++ ++p+  ++d ++++
    CCE27652.1 345 QMTYWYETPDDQKDTWHWMGVAISLAQTIGLHRNPGTTS------MSTSKQRLWKRIWWSCFMRDRLVALGMRRPIRIKDQDFDVPMLTESD-FDIQ 434
                   ***************************************......88888**************************77**********9999.8888 PP

  Fungal_trans 196 ddaseetlvetk..........lsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlq.........seklswveeleraldnW 265
                      +++  v  +          ++   ++  +a+  l+++++l+  ++ l+  +++ +++ ++          ++ + v  ++ +l++W
    CCE27652.1 435 PLQEGISVVPAEctlirdvnmqRELAVMCIWKAKLCLCISHMLKVQYSVLIRDKMKPENTTNStmmlfpnsqVDNVDSVHSVDLELNAW 523
                   88888887775444544444443444444444444444444444477777777777777777777777777666666777777777777 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.025
  Fungal_trans   8 fhpqfpilhkpsflpkt 24 
                   +h  +  lh+p+flp+ 
    CCE27652.1 559 YHTTISALHRPQFLPSS 575
                   6788899*********9 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   9.6   1.1e-11   9.8e-08       1      39 [.      58      96 ..      58      97 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1.1e-11
                SS-HHHHHCT---ST..SSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus  1 haCdnCrkkKvKCda..kkPaCsnCkklnleCtfysesskr 39
                +aC +Cr +Kv+Cd   + P C+nC+  n+eC+  +es++r
  CCE27652.1 58 RACVSCRARKVRCDVveGAP-CGNCRWDNVECV-VQESRRR 96
                69*************99999.************.9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 6579.50
//
Query:       CCE27653.1  [L=944]
Description: uncharacterized protein CPUR_01127 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-07   30.5   0.0    7.1e-07   29.2   0.0    1.6  1  GAS2      Growth-Arrest-Specific Protein 2 Domain


Domain annotation for each model (and alignments):
>> GAS2  Growth-Arrest-Specific Protein 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0     4e-11   7.1e-07      30      63 ..     716     752 ..     690     756 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4e-11
        GAS2  30 fgdsqklvlvRilr...stvmVRVGGGWetLeefLek 63 
                  g+    ++vR +    + vmVRVGGGW  L+e+L++
  CCE27653.1 716 TGEPPIKLFVRCVGehgERVMVRVGGGWADLSEYLKE 752
                 6777788999999733456****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (944 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 7072.61
//
Query:       CCE27654.1  [L=460]
Description: related to beta-1,3-glucan binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-20   73.8   0.5    1.8e-20   73.1   0.5    1.4  1  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.5     1e-24   1.8e-20      21     131 ..     181     340 ..     143     345 .. 0.76

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 1e-24
                     EEEEEEEE...........................EEEEEEEE..CCEESSEEEEEEEE---STTEEEEEEEETGG.....TSTTEEEEE.EEET CS
  Glyco_hydro_16  21 tltltldk...........................esgsriks..kksflyGkvearikaaksaGvvtafylssed.....ekahdEiDi.EflG 80 
                     + tl l+k                             ++r+++  kks++yG+ve+ +k++k++ +++a++++ ed     +++++EiDi E  G
      CCE27654.1 181 NYTLDLTKdnrgctgtvntscittsdpvkgsmippVRSARLSTkgKKSIRYGQVEVVAKLPKGDWIWPAIWMMPEDstygpWPQSGEIDImESRG 275
                     444444445567777777777777778888888877799999999***************************643335689************** PP

                     T-TTE..EEEEEE...........BTTBSGE.EEEEETSS-TTTS-EEEEEEEETTEEEEEETTE CS
  Glyco_hydro_16  81 ndtgk..vqtnvy...........gkGkgkr.ekrlslwfdptedfHtYaieWtpdkikfyVDgk 131
                     n+++      n+y           ++G+ k+ + +  +  d ++ fHtY+++Wtp++i fy+D +
      CCE27654.1 276 NSRTYpeGGRNYYygtlhwgpvkgMDGYYKTtKAKRLRRGDYSDGFHTYGMQWTPNYIYFYIDSR 340
                     *988877444555555558885554555444544444478***********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3452.68
//
Query:       CCE27655.1  [L=900]
Description: uncharacterized protein CPUR_01129 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-50  169.9   2.0    6.2e-50  169.9   2.0    2.2  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    0.00017   21.4   0.0     0.0038   17.0   0.0    2.3  2  Glycos_transf_2  Glycosyl transferase family 2
     0.0012   18.8   0.0     0.0065   16.4   0.0    2.0  1  Glyco_tranf_2_3  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.9   2.0     1e-53   6.2e-50       1     189 [.     520     725 ..     520     757 .. 0.84
   2 ?   -0.9   0.3      0.22   1.3e+03     159     181 ..     838     860 ..     782     886 .. 0.68

  Alignments for each domain:
  == domain 1  score: 169.9 bits;  conditional E-value: 1e-53
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaela.spevaivqgpvlvmn.vanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevg.... 88 
                      iill+D+Dt++p+dcl++ aae+  spe+aivq+ ++vm+  ++++e+ +++f++  ++ +i+++ ++g+++p+vG++aflr+ a+q+vg    
       CCE27655.1 520 IILLVDSDTRVPEDCLLYGAAEMFlSPEAAIVQHSTGVMQiTHDYFENGITYFTN-LIYTAIRFSISSGETAPFVGHNAFLRWPAVQDVGvpee 612
                      79*********************999*************7369********9996.788999999***************************** PP

  Glyco_trans_2_3  89 .....gwdgdessvsEDfdmglrlqrkGyrvrfvpes..lvkekspltlraalrQrkRwayGc.el..eklillvrll..gylgsllwsalplh 170
                           +w+  es+vsEDfd++lrlq++G ++r ++++  ++ke+++lt+++++++++++ yG+ e+  ++++++ +     ++ ++++s+++l+
       CCE27655.1 613 dgfvpYWS--ESHVSEDFDIALRLQMAGNTIRIADYHdnAFKEGVSLTIYDEINRWQKYGYGVnEMifHPIHRWYKGPftPLFYTYITSNIMLS 704
                      ********..****************************************************96335644444432213456777888888888 PP

  Glyco_trans_2_3 171 lallllfslla........lalvllll 189
                        +++l+++ +        +      l
       CCE27655.1 705 SKISILAYMCSyyalgsalF------L 725
                      88888888755233343211......1 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.22
  Glyco_trans_2_3 159 lgsllwsalplhlallllfslla 181
                      + ++ w++l+l++++ ++ +l a
       CCE27655.1 838 FKTFKWMYLLLAVLVGIMVYLGA 860
                      44555666666665555555444 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.03   1.8e+02       2      65 ..     366     439 ..     365     461 .. 0.74
   2 !   17.0   0.0   6.4e-07    0.0038      78     169 ..     511     607 ..     507     608 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.03
                      EEEEESS-..TTTHHHHHHHHHHH....GGCCEEEEEEEEES-.SSCHHHHHGGGCH...C-TTEEEEEESSS- CS
  Glycos_transf_2   2 vviptyNe..ektlletlesllaq....dpypdfeiivvDDgS.tDetveileelak...edprvrvirreenv 65 
                      + +p+y e     +  t++sl a     + +     i+++D   + +++e   + ++    d r+  + r++ +
       CCE27655.1 366 IQMPVYKEgmDTVIVPTIRSLQAAishyESHGGSANIFINDDGlRAGLEEEQMQQRRefyADNRIGWVARPKHN 439
                      569******99*************99995555555555555544888877776666666666666666666555 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 6.4e-07
                      --SS.....EEEEEESSEEE-TT.HHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHH CS
  Glycos_transf_2  78 atgd.....yilflDaDdepdpd.wleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrea 165
                      a+gd     +il++D+D+ +++d  l   +e +   ++++++++     + t+ +  n  +++ + +y+ +r     g+++ ++g++a lr  a
       CCE27655.1 511 ADGDirvgeIILLVDSDTRVPEDcLLYGAAEMFLS-PEAAIVQHSTGVMQITHDYFENGITYFTNLIYTAIRFSISSGETAPFVGHNAFLRWPA 603
                      566666666**************777777777777.66677777777777777888887889****************************9888 PP

                      HHHC CS
  Glycos_transf_2 166 leel 169
                      ++++
       CCE27655.1 604 VQDV 607
                      8776 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.1e-06    0.0065      85     201 ..     501     641 ..     361     666 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-06
  Glyco_tranf_2_3  85 a.............vk.sdlvllvDdDtvv.ePdtlkrllqffltpkvgavgtpvflln..rstlvsalgalefaerhlrflaarralgvltln 161
                      +             ++ ++++llvD+Dt+v e+++l  ++  fl+p++++v+ +  +++   +++ +  ++ +++  ++ +++   ++ ++++ 
       CCE27655.1 501 QtlkenplawadgdIRvGEIILLVDSDTRVpEDCLLYGAAEMFLSPEAAIVQHSTGVMQitHDYFENGITY-FTNLIYTAIRFSISSGETAPFV 593
                      1444344444332233678***********9999999999***********98777765323333332222.3333333344446777799999 PP

  Glyco_tranf_2_3 162 Gsgslirrevlkele.....gldp...lflltdDyelglrlrragfrt 201
                      G   + r   +++ +     g+ p    +++ +D++++lrl +ag  +
       CCE27655.1 594 GHNAFLRWPAVQDVGvpeedGFVPywsESHVSEDFDIALRLQMAGNTI 641
                      ******************9955555556999***********988554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 6228.63
//
Query:       CCE27656.1  [L=668]
Description: related to putative human GTP-binding protein MMR1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-17   61.8   0.1    3.9e-15   55.9   0.0    2.6  2  MMR_HSR1     50S ribosome-binding GTPase
    1.3e-07   31.7   0.0    0.00069   19.6   0.0    2.3  2  RsgA_GTPase  RsgA GTPase
    1.6e-07   31.0   0.1    1.1e-05   25.0   0.1    2.3  2  FeoB_N       Ferrous iron transport protein B
    0.00064   19.8   0.2      0.099   12.7   0.1    2.7  2  Dynamin_N    Dynamin family
  ------ inclusion threshold ------
      0.011   15.8   7.7      0.013   15.5   7.7    1.2  1  TFIIA        Transcription factor IIA, alpha/beta subunit
      0.027   13.8   0.0      0.048   13.0   0.0    1.4  1  AIG1         AIG1 family
      0.059   13.1  17.2       0.16   11.7  17.2    1.7  1  Cwf_Cwc_15   Cwf15/Cwc15 cell cycle control protein
      0.081   12.1   4.5       0.14   11.3   4.5    1.3  1  TRAP_alpha   Translocon-associated protein (TRAP), alpha subu
       0.13   11.5  14.8       0.22   10.8  14.8    1.3  1  BUD22        BUD22
       0.25    9.5  12.3       0.35    9.0  12.3    1.1  1  Nop14        Nop14-like family
        1.3    8.0   6.7        2.1    7.4   6.7    1.2  1  Roughex      Drosophila roughex protein
        1.8    8.1  10.9        3.5    7.1  10.9    1.4  1  PPP4R2       PPP4R2


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.07     1e+02      70     113 ..     179     223 ..     162     227 .. 0.66
   2 !   55.9   0.0   2.6e-18   3.9e-15       1      57 [.     356     410 ..     356     437 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.07
                 HHHHHCTSEEEEEEETTTTCSHHHHHHHHHHHHH..TTSEEEEEEE CS
    MMR_HSR1  70 flaleeadlillvvdaseeklkpldeeleellee..akkplilvln 113
                 ++ +e++dli+ +vda+ + l    e+le++ ++   kk+ +l++n
  CCE27656.1 179 WRVIERSDLIVQIVDAR-NPLLFRSEDLESYVKDidPKKENLLLIN 223
                 4446679********98.4344455666666544443444455555 PP

  == domain 2  score: 55.9 bits;  conditional E-value: 2.6e-18
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGli 57 
                 +v++vG+pNvGKS+ inal+g+ k+ vs++pg+T++ ++++++   ++++l+D+pGl+
  CCE27656.1 356 QVGLVGYPNVGKSSTINALIGAkKVSVSSTPGKTKHFQTIHLS---DDVILCDCPGLV 410
                 599******************9789*****************8...59********75 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00048      0.71      48      90 ..     217     258 ..     189     267 .. 0.86
   2 !   19.6   0.0   4.6e-07   0.00069     102     161 ..     357     409 ..     308     415 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00048
                  EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTH CS
  RsgA_GTPase  48 epvivlnKiDlleeeeeleelkeelealgyevllvsaktkegl 90 
                  e ++++nK+D+++ ++  ++++++l+++g++  + sa+  +++
   CCE27656.1 217 ENLLLINKADMMTPTQ-RKAWAKHLKQAGISYKFFSAQLAKEM 258
                  56899***********.*************9999999865544 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 4.6e-07
                  EEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-SS CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPGf 161
                  + lvG   vGKS+ inal++      ++vs ++  Gk  T++ + ++l+++ +l+D PG+
   CCE27656.1 357 VGLVGYPNVGKSSTINALIGA-----KKVSVSSTPGK--TKHFQTIHLSDDVILCDCPGL 409
                  34899999************9.....56666677777..999*****************8 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.029        43      77     131 ..     183     241 ..     166     259 .. 0.75
   2 !   25.0   0.1   7.4e-09   1.1e-05       2      57 ..     356     409 ..     355     427 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.029
                 TSSSEEEEEEEGGG..HHHH..HHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHH CS
      FeoB_N  77 eepdvvvnvvdatn..lern..LyLtlqllelgvpvvlalnmideaekkgieidlkkLs 131
                 e+ d++v++vda n  l r+  L   ++ ++ +++ +l +n+ d ++ ++ +  +k+L+
  CCE27656.1 183 ERSDLIVQIVDARNplLFRSedLESYVKDIDPKKENLLLINKADMMTPTQRKAWAKHLK 241
                 789*********99555565114445555566688899999999888777666666665 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 7.4e-09
                 EEEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE---- CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGi 57 
                 +v lvG pnvGk++ +nal gak  +v+  pG+t   ++ +l+   ++v ++D PG 
  CCE27656.1 356 QVGLVGYPNVGKSSTINALIGAKkVSVSSTPGKTKHFQTIHLS---DDVILCDCPGL 409
                 689******************97369********888888888...9999*****96 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.027        41     125     167 ..     181     225 ..     164     226 .. 0.88
   2 !   12.7   0.1   6.6e-05     0.099       1      41 [.     357     398 ..     357     410 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.027
                 HHSTTEEEEEEEETTS..-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 125 yikkadiilavtsanh..dlsnsealflarevdpkgkrtivvltk 167
                  i+++d+i+ +++a +   + + + +   + +dpk+++ + ++++
  CCE27656.1 181 VIERSDLIVQIVDARNplLFRSEDLESYVKDIDPKKENLLLINKA 225
                 6899**********99545677799***************99976 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 6.6e-05
                 EEEEEBTTTTHHHHHHHHHTS--S---SS.S---S-EEEEEC CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpn.ptTrrplelqlg 41 
                 + +vG  + GKSS +naL+g++   ++++   T  + +++l+
  CCE27656.1 357 VGLVGYPNVGKSSTINALIGAKKVSVSSTpGKTKHFQTIHLS 398
                 6789999*************8766655551567777777766 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   7.7   8.9e-06     0.013     308     375 ..     239     332 ..      28     334 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 8.9e-06
       TFIIA 308 a...............dlseilqlDGagddsde...........eeeeeesdedsdsessdd.edeq.veEDplNSdDDvddeddddlfdtdnviv 375
                 +               +++ i   D ++d++d+           + +++es+ed+++++  + e e+ +   +l S+D  +ded+d+ +d+d  i+
  CCE27656.1 239 HlkqagisykffsaqlAKEMIEARDQEDDSEDDtpqhpsrpggkQAADKESSEDEEQDE--ElEGEKvEGYTALASGDEDEDEDEDEDEDEDTQIL 332
                 02223344445555555555556666666666677788887776555555555555333..33444446679*****6666666555488887776 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.2e-05     0.048       4      59 ..     358     409 ..     355     426 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
                 EEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SC CS
        AIG1   4 vlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPgl 59 
                  lvG   +GkS+T+N+++g k  + + s+ + tk++q+        ++   D Pgl
  CCE27656.1 358 GLVGYPNVGKSSTINALIGAKKVSVS-STPGKTKHFQTI---HLSDDVILCDCPGL 409
                 59*****************9987666.345555555543...34445666666666 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  17.2   0.00011      0.16      81     161 ..     251     345 ..     202     356 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                 -....--------------------------..-----------------..........----------------------------------- CS
  Cwf_Cwc_15  81 e....ekekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeee..........eesdddsdsdsdddddedetaeLlrELekikrera 161
                 +    ++  +++++e+++e++  ++ +    ++++d++++++ee++ee e          ++ d+d+d+d+d+d+ded +   + ELe+i  + a
  CCE27656.1 251 SaqlaKEMIEARDQEDDSEDDTPQHPSRPGGKQAADKESSEDEEQDEELEgekvegytalASGDEDEDEDEDEDEDEDTQILTVDELENIFLQHA 345
                 0333322222222222222222222222223456777777776655555566677777655555566566666655555555578***9966655 PP

>> TRAP_alpha  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.5   9.3e-05      0.14      37     113 ..     272     371 ..     243     378 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.3e-05
  TRAP_alpha  37 e...........lvdvea.edeeveeeeeeeeeeee.......eeeedeeelkaspdadttilFtkpv.....ekaeeelpageivef.lvgFtnkGse 110
                             ++d e+ edee++ee e e+   e        +e+++e+ ++  d dt+il +  +     ++a ++  a++  ++ lvg+ n G++
  CCE27656.1 272 TpqhpsrpggkqAADKESsEDEEQDEELEGEKV--EgytalasGDEDEDEDEDEDEDEDTQILTVDELeniflQHAPKDAAADHKLQVgLVGYPNVGKS 368
                 255555555555333333222222222111111..11233444666667777888999999999987766666778888888877765599**999987 PP

  TRAP_alpha 111 dfv 113
                   +
  CCE27656.1 369 STI 371
                 655 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  14.8   0.00015      0.22     116     242 ..     201     328 ..     195     356 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
       BUD22 116 nsktvkevveeivesvkkllgiekkkkkkeeekkkkkkkkkkkkkkeeee.......eeesdkeeesedsedeekeeseddeeeeeededdedaeedee 207
                  s+ + + v++i  + + ll i+k  +   ++ ++k+ +k+ k++  + +       +e  ++ ++++dsed  +  ++ ++   ++ +d+e++e++e+
  CCE27656.1 201 RSEDLESYVKDIDPKKENLLLINK--ADMMTPTQRKAWAKHLKQAGISYKffsaqlaKEMIEARDQEDDSED--DTPQHPSRPGGKQAADKESSEDEEQ 295
                 555566666666666666666666..2222223333333333333333335555444566666666666666..2333333333344444444444445 PP

       BUD22 208 deeaeerelaqydgllasddededeyneetdeess 242
                 dee e ++++ y + las deded ++e++de+++
  CCE27656.1 296 DEELEGEKVEGYTA-LASGDEDED-EDEDEDEDED 328
                 56666677777766.567777776.2233333322 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  12.3   0.00024      0.35     314     387 ..     259     329 ..     224     379 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00024
       Nop14 314 asaDdldddfvleeeeeeeefglgkglkataeeeeeededdfeedddlveseseeeeeeeeedeeeeedeeeee 387
                 ++a d +dd + ++ ++ ++ g gk+ +  ++e++e++e+d+e + ++ve      + +e+ede+e+ede+e++
  CCE27656.1 259 IEARDQEDDSEDDTPQHPSRPG-GKQAA--DKESSEDEEQDEELEGEKVEGYTALASGDEDEDEDEDEDEDEDT 329
                 3444444444444444444444.22222..33345555555555555565555555422222222222222222 PP

>> Roughex  Drosophila roughex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.7    0.0014       2.1     220     289 ..     259     331 ..     244     389 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
     Roughex 220 aranpqtddeeeevpqarslsvrrilfadga..dedgdedtdgs.veekkddasepdlpdqnkeedkdeqeqq 289
                  +a  q dd e+++pq  s+   +      +  de+ de+ +g  ve     as  +  d++++ed+de+ q 
  CCE27656.1 259 IEARDQEDDSEDDTPQHPSRPGGKQAADKESseDEEQDEELEGEkVEGYTALASGDEDEDEDEDEDEDEDTQI 331
                 4678899**********99988776554433014444455544313444444454444555555555555544 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  10.9    0.0024       3.5     212     285 ..     261     328 ..     181     333 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0024
      PPP4R2 212 nlgfedeeekeeddneseesaseseeiteekdesvkveekdddeeddeedtdyveeeeddesedddeeeeeeee 285
                   ++ed++e+++     ++ +s+   + +++d+++  +e++d+e + e+ + y   +++de+ed+de+e+e+e+
  CCE27656.1 261 ARDQEDDSEDDT-----PQHPSRPGGK-QAADKESSEDEEQDEELEGEKVEGYTALASGDEDEDEDEDEDEDED 328
                 111122222111.....1122222211.1122222222222333333333333334555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       976  (0.0544369); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 4399.46
//
Query:       CCE27657.1  [L=413]
Description: related to low-temperature viability protein LTV1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.6e-127  424.2  17.9   8.6e-127  424.0  17.9    1.0  1  LTV       Low temperature viability protein


Domain annotation for each model (and alignments):
>> LTV  Low temperature viability protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.0  17.9  4.8e-131  8.6e-127       1     383 []       8     405 ..       8     405 .. 0.88

  Alignments for each domain:
  == domain 1  score: 424.0 bits;  conditional E-value: 4.8e-131
         LTV   1 dkkkAvtFqlvhRsqnDpliaDedApqhVLvpvekpnkkkkkkskklkdleselkse.kevrknegeaakyGiyFDDseYDYmqHLreigs...eavfv 95 
                 dkk+A++F+lvhR+qnDpli+De+ p++VL p +++    ++k+k+l+dl+se++se  e+r+negeaa +G+y+DD+eYDYmqHLr+++    + vf+
  CCE27657.1   8 DKKTAQHFTLVHRPQNDPLIHDESVPSMVLKPSNAK--PGSSKVKHLDDLASEFGSEaGEIRANEGEAASHGVYYDDTEYDYMQHLRDLNAgsgQVVFI 104
                 8*******************************9995..69**************************************************9999***** PP

         LTV  96 eakkkkkkkekgkkkkkkkledll..........lllpssvlpsefeekvtlqdqqkvpdeiaGfqpDmDPrLRevleaLedeayvddeeeeedDiFae 184
                 ea+    +k+kgk+  k++led+l          +l+++++lps++ +++t+q qq++pd+iaGfqpDmDPrLRevleaLedeayvd+    ++DiF++
  CCE27657.1 105 EAT----DKAKGKQ--KESLEDALkkldlekkpgHLFDDEILPSKNLTRATYQVQQEIPDAIAGFQPDMDPRLREVLEALEDEAYVDE----DEDIFES 193
                 **3....3344444..3467776677778899**99***************************************************7....89***** PP

         LTV 185 lakdgeevdeeefeee....eddewdsdatekadeqpkk.....edeeeeeedeenedweadfakfkkeekksr..eadddeee..seeqssvae.... 266
                 l+kdg+e+de efe+e    ++++w+sd+t+k+ +++k+      ++ e++e   ++dw++df+kfkke+k+ r  + ++++++  ++e +s+++    
  CCE27657.1 194 LTKDGTEIDEYEFEDEqfydDEEGWESDGTAKPTREYKEnipdlVETSEDPEVGPSQDWMEDFKKFKKEQKSGRtpA-AAAAAApsQSEVQSTWTtttn 291
                 **************77566569***********666666788887788999999********************642.222222333333444445665 PP

         LTV 267 .krkkkrkGAltdfseySmtSSalaRteqltlLDdrFekleekYdddeeeeedeeeleeevdmksvvs..ersDfesilddflnnYekegkkrkvlkkk 362
                  +rkkkrkGA+t+ s++Sm+SS+l+Rteq++lLD+rF+ lee+Y++d+e+++++ +   +v + s+v+   r+Df+si+ddfl++Y+k gk  +++kk+
  CCE27657.1 292 gGRKKKRKGAMTNASSFSMSSSSLVRTEQMNLLDARFDVLEERYNEDDEDDMASVS---QVSTVSTVDgpMRKDFDSIMDDFLGSYTKPGK--RTSKKS 385
                 55******************************************999877766666...66666667799********************9..889*** PP

         LTV 363 eekkelkqladevrkerrser 383
                 + +++l+ql +e+r+e+++ r
  CCE27657.1 386 KAQTGLEQL-EEIRRELGPPR 405
                 *********.*******9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1075  (0.0599587); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2965.64
//
Query:       CCE27658.1  [L=1390]
Description: related to leucine permease transcriptional regulator SAC3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-98  327.8   0.2      1e-97  327.0   0.2    1.4  1  SAC3_GANP      SAC3/GANP family
  ------ inclusion threshold ------
        0.1   12.8   0.0       0.25   11.6   0.0    1.7  1  ETC_C1_NDUFA4  ETC complex I subunit conserved region
       0.13   12.3   1.5       0.53   10.3   1.5    2.1  1  HTH_29         Winged helix-turn helix


Domain annotation for each model (and alignments):
>> SAC3_GANP  SAC3/GANP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.0   0.2  1.8e-101     1e-97       1     292 [.     220     539 ..     220     540 .. 0.98

  Alignments for each domain:
  == domain 1  score: 327.0 bits;  conditional E-value: 1.8e-101
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----HHHHHHHHHHHHHHTG..G..GTTTCHHHHHHHHHHHHH CS
   SAC3_GANP   1 GtCedmCPekEraeRevqkdlsrfEkekkktkkvdpskaVKeysRsaagqeeplpsdlRppevLkkTldYLlkeildreeeelaevydFiwDRtRaiRq 99 
                 G+CedmCPe+E+++R+++ d+ ++Ek ++kt+ +++sk+VK+ +Rsaagqe+plp+d+R+++ L++TldYLl+++l r++ +l+ v+ F+wDRtRaiR+
  CCE27658.1 220 GICEDMCPEFEKITRITELDVVQAEK-DPKTTYANTSKMVKKLARSAAGQEAPLPMDVRSIPSLRRTLDYLLDDLL-RDDGNLPVVHGFLWDRTRAIRR 316
                 99***********************7.999**********************************************.5568****************** PP

                 HHHHTT--SHH....HHHHHHHHHHHHHHHHHHHHHTTS...---CHHHHHHHHHHHHHHHHHHHHHH...---TTHHHHHHHHHHHTTT-HHHHHHHC CS
   SAC3_GANP 100 Dltiqnlskae....aveilerivrfhilslhrlceepes..sfdeqqnleqLqkclqsLlelYddlrkkkeelpneaefrayylLlnlrdpdilrevq 192
                 D+++ ++ ++e    +v++le+i+rfh++slh+l++e ++  +f +qq+leqL+k+l sL+++Ydd+ +++++++ne+efrayylL++++dp+il+++q
  CCE27658.1 317 DFSFFSSLTPEetktQVYVLENIARFHVTSLHLLSQEGKApeDFVQQQELEQLGKALLSLRDVYDDCGEQGITCENESEFRAYYLLFHAKDPSILETLQ 415
                 ******999988999**********************99999**************************999***************************9 PP

                 .TS.-HHHHTSHHHHHHHHHHHHH--TT.................HHHHHHHHT..TS-HHHHHHHGGGHHHHHHHHHHHHHHHS...-TT---EEHHH CS
   SAC3_GANP 193 .el.pseilkspevqlalklvaalqenn.................yvrffklvk..evsylqacllerhfnevRrkalkalsray...kskskkvplee 267
                  ++ ++++++s+ev++a++lv+alq+++                 ++++f++v+  +vsy++ac++e+hf+++Rr++l++l+ra+   k+++k+v+++ 
  CCE27658.1 416 rQWkSRHWRDSDEVRTAVSLVEALQHTHefhgpikagpslaasaaFQTYFRIVQdpQVSYTMACFAECHFPQLRRSILQSLKRALtrpKTTAKDVTAAA 514
                 7888899*******************************************************************************999999******* PP

                 HHHHTT-SSHHHHHHHHHHTT--EE CS
   SAC3_GANP 268 LaelLlfddeeeaeefceayglevs 292
                 L+e+L fd+ ++a++f e +gle++
  CCE27658.1 515 LNEFLQFDTVQQAIDFAEMHGLEFQ 539
                 **********************986 PP

>> ETC_C1_NDUFA4  ETC complex I subunit conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.2e-05      0.25      51      77 ..     517     544 ..     505     580 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.2e-05
                    E.EEESSHHHHHHHHHHCT-EEEEE-SS CS
  ETC_C1_NDUFA4  51 s.lkFdskedAiayaekqgweyeveepk 77 
                    + l+Fd+ ++Ai++ae +g+e++ + + 
     CCE27658.1 517 EfLQFDTVQQAIDFAEMHGLEFQSNPED 544
                    249*******************876654 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.5   8.9e-05      0.53      20      52 ..     993    1024 ..     992    1029 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.9e-05
      HTH_29   20 kllglsrrtvyrwlkrfeegGlaalldrrrsgr 52  
                  ++++ls +++yrw+   +e++l al+++ r  r
  CCE27658.1  993 RRYNLSLKYFYRWKQNAREKRLHALRRGGR-DR 1024
                  689*******************99965332.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.45
# Mc/sec: 9311.01
//
Query:       CCE27659.1  [L=490]
Description: probable centromere/microtubule binding protein cbf5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-34  115.3   0.3    5.7e-32  109.6   0.2    2.6  2  DKCLD         DKCLD (NUC011) domain
    1.4e-23   83.9   0.1    2.2e-20   73.6   0.1    3.4  1  TruB_N        TruB family pseudouridylate synthase (N termina
    2.8e-23   81.8   1.6    5.6e-23   80.9   1.6    1.5  1  TruB_C_2      tRNA pseudouridylate synthase B C-terminal doma
    1.8e-20   72.7   0.7    3.6e-20   71.7   0.7    1.5  1  PUA           PUA domain
     0.0031   17.7   0.0     0.0078   16.5   0.0    1.7  1  UPF0113       UPF0113 PUA domain
  ------ inclusion threshold ------
       0.69    9.1  11.7          1    8.6  11.7    1.2  1  CCDC71L       Coiled-coil domain-containing protein 71L


Domain annotation for each model (and alignments):
>> DKCLD  DKCLD (NUC011) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.2   1.9e-35   5.7e-32       1      58 []      26      83 ..      26      83 .. 0.98
   2 ?    2.9   0.0     0.038   1.1e+02       4      28 ..     267     291 ..     265     293 .. 0.88

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 1.9e-35
                XXXXX....XXX-EEESS-----TTSS--GGG--HHHHHHTEEEEEEE-SSS-HHHHH CS
       DKCLD  1 tsewpllLknydkllvrtehytplpaGssPlkRpieeyikyGvinLDKPsnPsSHEVV 58
                ts+wpllLknydkllvrt+h+tp+p+G+sPl R+i++yi++GvinLDKPsnPsSHEVV
  CCE27659.1 26 TSSWPLLLKNYDKLLVRTGHFTPIPNGCSPLMRDIKSYISSGVINLDKPSNPSSHEVV 83
                689******************************************************9 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.038
                 XX....XXX-EEESS-----TTSS- CS
       DKCLD   4 wpllLknydkllvrtehytplpaGs 28 
                 ++ lL+ y++l+v+ ++ + + +G 
  CCE27659.1 267 LETLLTSYKRLVVKDSAVNAVCYGA 291
                 7889************999999986 PP

>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.1   7.3e-24   2.2e-20       1     149 []      87     204 ..      87     204 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 7.3e-24
                 HHHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE----------- CS
      TruB_N   1 krllkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvppmySAvk 99 
                 kr+l+a+k Gh+GtLDp++tG+L+v++++aT+l+++ + a KeY+++irl+ +                      +l ++l+++tG++ q+pp +SAvk
  CCE27659.1  87 KRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKLPGGQ----------------PQLARALETLTGALFQRPPLISAVK 169
                 89************************************************98887665................47999******************** PP

                 ----------------------EEEEEEEEEEEEEE..EEEEEEEESTTTTH CS
      TruB_N 100 vnGkrlyelaregeeverkkrkvtiyelelleveep..evelevecskGtYi 149
                                  r+ r  ti+e +l+e++++     + v+c++GtYi
  CCE27659.1 170 -----------------RQLRIRTIHESKLIEFDNDrhLGVFWVSCEAGTYI 204
                 .................999*************988767789*********8 PP

>> TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   1.6   1.9e-26   5.6e-23       1      63 [.     205     271 ..     205     272 .. 0.95

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 1.9e-26
                 HHHHHHHHHHTTS-EEEEEEEEEEETTE.GG-..B-HHHHHHHHHHHHT..--H.HHHHEEEGGGGG CS
    TruB_C_2   1 RtLcdDiGeaLgcgAhveeLRRtrvgpf.deedmvtledLedavllyke..dee.LdrlllPlesal 63 
                 RtLc ++G++Lg+gAh++eLRR+r+g++ ++++mvtl+d+ da++++++  de+ L+r++ Ple++l
  CCE27659.1 205 RTLCVHLGLLLGVGAHMQELRRVRSGAMdETKQMVTLHDVLDAQWTMDNtrDESyLRRVISPLETLL 271
                 9***************************99999************999997777***********98 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.7   1.2e-23   3.6e-20       1      73 [.     275     347 ..     275     348 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 1.2e-23
                 CEEEE-HHHHHHHHTT-EEEGGGEEEEETT--TTSEEEEEETTSCEEEEEEESS-HHHHHHHCTSEEEEEEEE CS
         PUA   1 grvvvddgAvkallsgasLlapGvvevegdfeegdvVaivdedgelvavGlanysseelakikggksveierv 73 
                 +r+vv+d+Av+a+++ga+L+ pG++++e  +e  ++V++++++ge++a+++a++s+ e+ ++++g++++++r+
  CCE27659.1 275 KRLVVKDSAVNAVCYGAKLMLPGLLRYEAGIEHHEEVVLMTTKGEAIALAIAQMSTVEMSTCDHGVVAKVKRC 347
                 589*******************************************************************997 PP

>> UPF0113  UPF0113 PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.6e-06    0.0078       3      56 ..     278     332 ..     276     349 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.6e-06
     UPF0113   3 vvkekaeklFLYGrdvlkesilkitesvkenqvvvVlnengeplGiGkirkdt.k 56 
                 vvk +a + + YG +++  ++l+++ +++ ++ vv++ ++ge++++++++ +t +
  CCE27659.1 278 VVKDSAVNAVCYGAKLMLPGLLRYEAGIEHHEEVVLMTTKGEAIALAIAQMSTvE 332
                 89***********************************************998863 PP

>> CCDC71L  Coiled-coil domain-containing protein 71L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  11.7   0.00034         1     248     355 ..     361     478 ..     314     488 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00034
     CCDC71L 248 ggvlkeskackasgvlngr..........lstktsqakaartlakaacaqakvakakkikakesvqarterkkqksssetvGqKrkraeeakelpakkk 336
                 g v +e+k +ka+g l              +++  + ++a + a aa a a+ a +++  a +++ + t++++      + G K+kr + + e+p+ k 
  CCE27659.1 361 GPVAQEKKKMKADGKLDKFgrpndstpakWTSEYKDFNSADASAAAAAAAAAPAAPATPAAAKKADDDTKMEDATPAAAEDGDKKKRKKSEVETPEEKA 459
                 457788999999999965443555443332222222223333333333333333333333466667788999999999999999999888888888888 PP

     CCDC71L 337 arlvpqsekselgkgtanl 355
                 +r+  + ek+  +  +++ 
  CCE27659.1 460 ERKRRRAEKKAAKAAKKDK 478
                 8777777776555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1711  (0.095432); expected 358.6 (0.02)
Passed bias filter:                      732  (0.0408277); expected 358.6 (0.02)
Passed Vit filter:                       120  (0.00669307); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 3196.61
//
Query:       CCE27660.1  [L=401]
Description: uncharacterized protein CPUR_01134 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2866.10
//
Query:       CCE27661.1  [L=269]
Description: related to F-LANa protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-25   89.5   8.3      3e-25   89.3   8.3    1.0  1  DER1      Der1-like family


Domain annotation for each model (and alignments):
>> DER1  Der1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   8.3   1.7e-29     3e-25       1     190 [.      11     205 ..      11     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 1.7e-29
        DER1   1 iPavTRllltatvvltllgrlelispaklvlsyelvvk.kvQiwRlltsllyfsstgfsflinlyfiyqysskLEegsfr.grsadyvylllfla..vl 95 
                 +P++ R++ t t v+++ + l+++   ++++++  +++   QiwRl ts+l+ +s g+  l++ yf+y y+ +LE g+ r +r++d +++llf++  +l
  CCE27661.1  11 LPPMSRTIATFTFVVSAGVVLGMLPAKYFIFHPFYLFRfPPQIWRLATSFLV-TSPGIGLLFDTYFLYTYLCQLEVGNPRfPRKEDLIWYLLFVCgtIL 108
                 69*******************************99998457**********9.899*******************9864435679***99988642144 PP

        DER1  96 itllglladlvvLgqalilaivYvwskknkdvqvsFfgvlrvkakylPlvllafsfllge...svvvsligilvghiyyfledkypiklnGkdllktP 190
                 +t   +++ ++    alila++Y+ +++ +  +v++ + +++ a+++P+ +la+++l+ +   +++ +l g++ gh++ fl++++p+  +G+++l+tP
  CCE27661.1 109 VTNHLTGFGFMTFLPALILAMAYTVTQEQSGANVNYMF-ITMPAQMMPYAMLAINLLFPGgamNLLLQLHGLFAGHLFDFLTKTWPNYGGGRNVLSTP 205
                 4433334556777789*******************887.679****************874345567888**************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1908.35
//
Query:       CCE27662.1  [L=117]
Description: uncharacterized protein CPUR_01136 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 877.17
//
Query:       CCE27663.1  [L=123]
Description: uncharacterized protein CPUR_01137 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 952.12
//
Query:       CCE27664.1  [L=110]
Description: uncharacterized protein CPUR_01138 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 844.41
//
Query:       CCE27665.1  [L=358]
Description: probable replication factor c (40 kDa subunit) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-23   82.7   0.0    5.6e-23   81.2   0.0    1.8  1  Rep_fac_C        Replication factor C C-terminal domain
    5.9e-12   45.7   0.0      1e-08   35.1   0.0    2.3  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
    2.2e-11   44.3   0.0    4.3e-11   43.4   0.0    1.5  1  AAA              ATPase family associated with various cellul
    5.9e-07   29.6   0.0    1.2e-06   28.6   0.0    1.5  1  AAA_14           AAA domain
    2.3e-06   28.1   0.0     0.0001   22.7   0.0    2.4  2  AAA_16           AAA ATPase domain
      3e-05   23.8   0.0    7.1e-05   22.6   0.0    1.6  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00011   22.5   0.1       0.16   12.3   0.0    2.5  2  AAA_22           AAA domain
    0.00014   21.7   0.0    0.00022   21.0   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00019   21.3   0.0    0.00037   20.4   0.0    1.5  1  AAA_3            ATPase family associated with various cellul
     0.0023   17.7   0.0     0.0039   17.0   0.0    1.3  1  DNA_pol3_delta   DNA polymerase III, delta subunit
     0.0029   17.6   0.0     0.0054   16.7   0.0    1.4  1  Rad17            Rad17 P-loop domain
     0.0036   16.7   0.0      0.029   13.8   0.0    2.1  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0053   15.8   0.0     0.0094   15.0   0.0    1.4  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0055   17.0   0.0      0.018   15.3   0.0    2.0  1  AAA_assoc_2      AAA C-terminal domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.016   15.0   0.0    1.3  1  AAA_11           AAA domain
      0.021   14.8   0.1      0.061   13.2   0.1    1.9  1  NTPase_1         NTPase
      0.022   15.1   0.1      0.066   13.5   0.1    1.9  1  AAA_19           AAA domain
      0.023   14.1   0.0        2.7    7.4   0.0    2.3  2  TniB             Bacterial TniB protein
      0.027   14.2   0.0       0.16   11.7   0.0    2.0  2  AAA_24           AAA domain
      0.028   14.2   0.1        1.1    9.0   0.0    2.3  2  DEAD             DEAD/DEAH box helicase
      0.029   14.3   0.2       0.63    9.9   0.0    2.7  3  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do
       0.03   13.8   0.0      0.053   13.0   0.0    1.4  1  KTI12            Chromatin associated protein KTI12
      0.089   12.8   0.1       0.46   10.5   0.0    2.3  3  AAA_5            AAA domain (dynein-related subfamily)
       0.12   11.9   0.1       0.64    9.6   0.1    2.0  2  AAA_25           AAA domain
       0.12   12.0   0.0       0.41   10.3   0.0    1.8  1  AAA_30           AAA domain


Domain annotation for each model (and alignments):
>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   7.9e-26   5.6e-23       1      88 []     256     342 ..     256     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 7.9e-26
                 --HHHHHHHHHHHHHT-HHHHHHHHHHHHHHC---HHHHHHHHHHHGCCS..S-HHHHHHHHHHHHHHHHHHHCTH-HHHHHHHHHHH CS
   Rep_fac_C   1 phpteieeileaclngdfeeaykklrellvekGysaediltqlhrvvkeqeelpeaqkleilellgeiekrlveGasehlqlsallar 88 
                 php +++ +l+ac +g+++ a ++lr +l++ Gys  di++++++v k+  +l+e+ kle+++++g+++++++eG++++lqls+ +ar
  CCE27665.1 256 PHPVKVQAMLKACYEGNVDSALDILR-ELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQLSGCVAR 342
                 8************99**********8.**********************977********************************9997 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0018       1.3       2      49 ..      51      97 ..      50     107 .. 0.89
   2 !   35.1   0.0   1.4e-11     1e-08      84     162 ..     110     191 ..      94     192 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0018
  DNA_pol3_delta2  2 qeealkilskalksgrlahayLfeGdegigkkelalnlakallceekn 49
                     ++e+++ l+ ++++g++ h  +++G  gigk ++ l+la++ll ++ +
       CCE27665.1 51 NTETIERLKIIAREGNMPHV-IISGMPGIGKTTSVLCLARQLLGDSYK 97
                     78999**************6.68******************9977655 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 1.4e-11
  DNA_pol3_delta2  84 kldqirelieelsrkpre...skkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                       +d +r+ i+ + +k +    +++k++i+++a+ mt+ A+ al +t+E  s+ + f +  +++nk++++++SRc +l+  +l
       CCE27665.1 110 GIDVVRNRIKGFAQKKVTlppGRHKLVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKL 191
                      7899998888888887766889******************************************************998776 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0     6e-14   4.3e-11       1     128 [.      70     187 ..      70     191 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 6e-14
                 EEEESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel.....gvefleisgsellskyvgesekkirelfkeakeka...kpsilfiDEidalaksrsgseseeeervvnqLlt 91 
                 v+++G pG+GKT+ +  +a++l     +  +le+++s+ +   +    ++i+++ ++  +     +++ +++DE+d++++             +++L +
  CCE27665.1  70 VIISGMPGIGKTTSVLCLARQLlgdsyKEAVLELNASDER--GIDVVRNRIKGFAQKKVT-LppgRHKLVILDEADSMTSGA-----------QQALRR 154
                 6899*****************877666788**********..999999999999998544.359888***********9888...........****** PP

                 HHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEE CS
         AAA  92 eldgvkkkeskvivigatnrpdkldpallrgRfdrki 128
                  ++ +++   ++ +  a+n+ +k+ ++l  +R+ +  
  CCE27665.1 155 TMEIYSN---TTRFAFACNQSNKIIEPLQ-SRCAILR 187
                 *****99...589****************.9*98765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.6e-09   1.2e-06       4     102 ..      69     174 ..      66     194 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.6e-09
      AAA_14   4 ilvitGaRrvGKTtllkqlikell..vkkesilyinldderdkkladpekllelilek..lke.ekktylflDEiqev.pewekalkslvd...egknl 93 
                  ++i+G+  +GKTt +  l+++ll    ke +l++n  der  +   + ++  + ++k  l +  ++++++lDE+  + +++++al++ ++   +++++
  CCE27665.1  69 HVIISGMPGIGKTTSVLCLARQLLgdSYKEAVLELNASDERGIDVVRN-RIKGFAQKKvtL-PpGRHKLVILDEADSMtSGAQQALRRTMEiysNTTRF 165
                 689********************99988999*****999999775544.355555555433.25899********87636799****999943233444 PP

      AAA_14  94 dvivtGSns 102
                  + +  Sn+
  CCE27665.1 166 AFACNQSNK 174
                 555555544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.4e-07    0.0001       6      51 ..      52      94 ..      47     121 .. 0.79
   2 ?    3.4   0.0      0.13        90     126     161 ..     125     158 ..      96     168 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.4e-07
      AAA_16  6 eeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd 51
                 e +e+L+ +    r+g  + v++sG++G+GK++ v +l+r+l +d
  CCE27665.1 52 TETIERLKIIA---REGNMPHVIISGMPGIGKTTSVLCLARQLLGD 94
                56666666654...4677799*********************9988 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.13
      AAA_16 126 llallsrderplvlvlDdlqwadeaslqllaaLlrl 161
                  +  l+++++  +++lD+++   ++ +q+l+ +++ 
  CCE27665.1 125 KVT-LPPGRH-KLVILDEADSMTSGAQQALRRTMEI 158
                 332.333234.6999***************998875 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   9.9e-08   7.1e-05       2      57 ..      41      91 ..      40     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 9.9e-08
      RuvB_N  2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakel 57
                rP  l++ +g ++  e+lki+     +re ++ hv+++G PG+Gktt    +a++l
  CCE27665.1 41 RPVFLDDVVGNTETIERLKII-----AREGNMPHVIISGMPGIGKTTSVLCLARQL 91
                999****************97.....58999****************999999876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00022      0.16       7      33 ..      69      95 ..      63     123 .. 0.78
   2 !    8.1   0.0    0.0041         3      82     121 ..     118     163 ..      93     170 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00022
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeea 33
                ++++ G +G+GKTt++  l++ql  ++
  CCE27665.1 69 HVIISGMPGIGKTTSVLCLARQLLGDS 95
                789******************996544 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0041
      AAA_22  82 leqalrarav.....ielliiDEaqhlrseealeeLrsllnl..srk 121
                 +   ++++ +     ++l+i+DEa+ + +  a + Lr+ +++  +++
  CCE27665.1 118 IKGFAQKKVTlppgrHKLVILDEADSM-TSGAQQALRRTMEIysNTT 163
                 55555555556667789**********.6555555555554433344 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.1e-07   0.00022       2      80 ..      71     150 ..      70     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.1e-07
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegk...pklpnlsvrtvdsflmalvkstkgkililDEylllhaGyil 80 
                      +++G+pG GK+t++  l+r+ l   ++++++  l+++     ++ +++++++ +   +l ++ + k++ilDE+ ++++G  +
       CCE27665.1  71 IISGMPGIGKTTSVLCLARQ-LLGDSYKEAVLELNASDergIDVVRNRIKGFAQKKVTLPPG-RHKLVILDEADSMTSGAQQ 150
                      89******************.77788888777777777777888888888888877777765.8********9888887655 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   5.1e-07   0.00037       1      88 [.      69     158 ..      69     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.1e-07
       AAA_3   1 hvllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkk...Gpvfanllladeinrappktqsalleamee 88 
                 hv++ g+PG++kt+ v  la++l  +  +     +l  sd  G++v++++ k f  kk    p  ++l++ de +  ++ +q al  +me 
  CCE27665.1  69 HVIISGMPGIGKTTSVLCLARQLLGDSYK-EAVLELNASDERGIDVVRNRIKGFAQKKvtlPPGRHKLVILDEADSMTSGAQQALRRTMEI 158
                 9*******************987655444.345688999999999999998777655511156679*******************999985 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.4e-06    0.0039      58     170 ..     133     235 ..     112     238 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.4e-06
                     EEEEEEE--.....TT-S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHH CS
  DNA_pol3_delta  58 krivvlknpklltkesklnekllkeLeeylsnlpedtlLiliapkklderkklvklLkkkatvveaktlkeeelkkwiqkraqelglkiekeale 152
                      ++v+l+ +      ++ +   +++L ++++ ++ +t + + ++    + +k++  L+++  ++++ +l+ +++ k + +++++++++ +++ l 
      CCE27665.1 133 HKLVILDEA------DSMTSGAQQALRRTMEIYSNTTRFAFACN----QSNKIIEPLQSRCAILRYAKLSDAQVVKRLLQIIEAEKVEYSDDGLA 217
                     578888888......558889999********************....6789******************************************* PP

                     HHHHHHTT-HHHHHHHHH CS
  DNA_pol3_delta 153 lLlelvennlsaikqele 170
                      L+ + e++++++ ++l+
      CCE27665.1 218 ALVFSAEGDMRQAINNLQ 235
                     ****************98 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.5e-06    0.0054       8      77 ..      35     100 ..      29     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.5e-06
       Rad17   8 lWfekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLske.lgiklrewl 77 
                 +W+eky+P  ++++    + ie +k   +   +++      +isG +G gk+t v  L+++ lg +++e +
  CCE27665.1  35 PWVEKYRPVFLDDVVGNTETIERLKIIAREGNMPHV-----IISGMPGIGKTTSVLCLARQlLGDSYKEAV 100
                 7**************999999999988777777766.....8*****************872577888765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     4e-05     0.029       2      59 ..      45     105 ..      44     119 .. 0.81
   2 ?    0.1   0.0      0.59   4.2e+02     109     131 ..     135     157 ..     125     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4e-05
  Mg_chelatase   2 lkdvkGqeeakraleiaa.aGg.HnlllvGppGsGKtmlakrlp.sllpplseeealevak 59 
                   l dv+G++e+ + l+i a  G+  ++++ G pG GKt    +l+ +ll +  +e +le ++
    CCE27665.1  45 LDDVVGNTETIERLKIIArEGNmPHVIISGMPGIGKTTSVLCLArQLLGDSYKEAVLELNA 105
                   689****999999997661565359*************99998626888888888888765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.59
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePle 131
                   +++LDE+  +++ + ++LR+ +e
    CCE27665.1 135 LVILDEADSMTSGAQQALRRTME 157
                   678****************9998 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.3e-05    0.0094      21      69 ..      59     107 ..      36     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
                 HHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE---- CS
        MeaB  21 rllakaGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavDPss 69 
                 +++a+ G+   v + G+PG Gk t v  l+ +l    ++ avl ++ s 
  CCE27665.1  59 KIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLGDSYKEAVLELNASD 107
                 578999************************************9987664 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.6e-05     0.018       3      33 ..     207     237 ..     205     267 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.6e-05
                  X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  AAA_assoc_2   3 kklkleddalealaeladGDaRkaLnlLEla 33 
                  +k++++dd l+al+  a+GD+R+a+n L+  
   CCE27665.1 207 EKVEYSDDGLAALVFSAEGDMRQAINNLQST 237
                  6899************************954 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.3e-05     0.016      15      43 ..      66     133 ..      51     218 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.3e-05
      AAA_11  15 seseitliqGPPGtgKTktivellsqll........................................s 43 
                 + ++ ++i+G PG gKT+ ++ l +qll                                         
  CCE27665.1  66 NMPH-VIISGMPGIGKTTSVLCLARQLLgdsykeavlelnasdergidvvrnrikgfaqkkvtlppgrH 133
                 4445.89********************766666666555555555555555555555444444444440 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   8.4e-05     0.061       1      24 [.      69      92 ..      69     110 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.4e-05
                EEEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlellk 24
                +v+i+G+pG+GKtT v  ++++l 
  CCE27665.1 69 HVIISGMPGIGKTTSVLCLARQLL 92
                79*************999988875 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   9.3e-05     0.066       7      84 ..      64     144 ..      58     235 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.3e-05
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTi....Hrlalldfddll 84 
                 + + +++++ + pG GKT+ + +  + l+       + + l a  +r  + +r+r++++ ++  T+    H+l +ld  d +
  CCE27665.1  64 EGNMPHVIISGMPGIGKTTSVLCLARQLLGDSYK-EAVLELNASDERGIDVVRNRIKGFAQKKVTLppgrHKLVILDEADSM 144
                 6677899***************999998877744.35666778889999999999999888877754444666444444433 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0037       2.7      21      52 ..      53      84 ..      39      99 .. 0.88
   2 ?    4.3   0.0     0.032        23     119     144 ..     132     157 ..     114     164 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0037
        TniB 21 erLeeLleypkrkrmpnlllvGdsnnGKtmiv 52
                e++e+L   +++  mp++++ G + +GKt+ v
  CCE27665.1 53 ETIERLKIIAREGNMPHVIISGMPGIGKTTSV 84
                667888888999*****************865 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.032
        TniB 119 kvrvLiiDEihnllagsarkqrefln 144
                 + +++i+DE +++ +g +++ r++++
  CCE27665.1 132 RHKLVILDEADSMTSGAQQALRRTME 157
                 5799*************999998875 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00022      0.16       5      91 ..      70     158 ..      66     169 .. 0.65
   2 ?   -0.3   0.0         1   7.3e+02     103     139 ..     267     307 ..     257     348 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00022
      AAA_24   5 iliyGpsgiGKTtlakel.......gpkplfidtekGlks.ldadkfpdieswedfldevvelaaeladyktlviDtideleelclaevirqnek 91 
                 ++i G +giGKTt+++ l        +k +++ ++++  + +d+ +      ++ f ++ v+l+   +  k +++D +d + + + + ++r  e+
  CCE27665.1  70 VIISGMPGIGKTTSVLCLarqllgdSYKEAVLELNASDERgIDVVRN----RIKGFAQKKVTLPPGRH--KLVILDEADSMTSGAQQALRRTMEI 158
                 7899************9966666665555555555543221333332....45666666666655555..8888888888888888888776666 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1
      AAA_24 103 G.ygelaeefrrllkklqelrk...nvifiahektrkdedp 139
                 + y    +   ++l+ l++l++   ++i ++   t+++ + 
  CCE27665.1 267 AcYEGNVDSALDILRELWDLGYsshDIISTMFKVTKTIPTL 307
                 55666667788999999999999999999998888876655 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.15   1.1e+02      16      39 ..      69      92 ..      53     109 .. 0.78
   2 ?    9.0   0.0    0.0016       1.1     119     148 ..     130     158 ..     103     172 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.15
                EEEEEESTTSSHHHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 16 dvlvaaeTGsGKTlaflipvlqiv 39
                +v++++  G GKT+  l  + q +
  CCE27665.1 69 HVIISGMPGIGKTTSVLCLARQLL 92
                799***********9888777665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0016
                 CTTEEEEEEETHHHHHHTTTHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 119 lsqvrflVlDEadrlldqgfsdfinrilnq 148
                   + ++++lDEad + +   ++ ++r ++ 
  CCE27665.1 130 PGRHKLVILDEADSMTSG-AQQALRRTMEI 158
                 566799**********96.77777776654 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.3e+03       7      48 ..      73     114 ..      70     116 .. 0.88
   2 ?    0.0   0.1         1   7.1e+02      49     103 ..     150     204 ..     138     219 .. 0.82
   3 ?    9.9   0.0   0.00088      0.63      18      61 ..     261     304 ..     258     314 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
  DNA_pol3_gamma3   7 rdmLGladrarlldlleallegdaaaalaelreqyaaGadpv 48 
                      + m G+  ++++l l  +ll    ++a+ el++  ++G+d+v
       CCE27665.1  73 SGMPGIGKTTSVLCLARQLLGDSYKEAVLELNASDERGIDVV 114
                      578899999999999999999999999999999999999976 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1
  DNA_pol3_gamma3  49 vvlrdLlellhqltllkvlpeaaedlslpeeererlkelaeklsleqLqrlWqll 103
                        lr  +e+  + t++ ++ +++++   p ++r ++   a+    ++++rl q++
       CCE27665.1 150 QALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLSDAQVVKRLLQII 204
                      5678889999999999999977777778888899999999999999999998885 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00088
  DNA_pol3_gamma3  18 lldlleallegdaaaalaelreqyaaGadpvvvlrdLlellhql 61 
                      +  +l+a +eg++++al+ lre+++ G+  + +++ +  +++++
       CCE27665.1 261 VQAMLKACYEGNVDSALDILRELWDLGYSSHDIISTMFKVTKTI 304
                      56789****************************99999988876 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.4e-05     0.053       1      79 [.      67     141 ..      67     153 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.4e-05
                 E.EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH.TTSSS--GGGHHHHHHHHHHHHHHHHT....T.SEEEE-S- CS
       KTI12   1 MpLvvltGlPssGKstrakeLakaleeekrsvvviddeslgiekdsykdsakekalRsslrsavkrdLs....kekvVIvDsl 79 
                 Mp v+++G+P  GK+t +  La++l    ++  v++ ++          ++    +R++++  ++++++    ++k+VI+D++
  CCE27665.1  67 MPHVIISGMPGIGKTTSVLCLARQLLGDSYKEAVLELNASD--------ERGIDVVRNRIKGFAQKKVTlppgRHKLVILDEA 141
                 9************************9999988888765544........3333333333333333333222227777777765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.5   3.9e+03      66      87 ..      40      60 ..      10      67 .. 0.67
   2 ?   10.5   0.0   0.00064      0.46       1      85 [.      69     152 ..      69     177 .. 0.75
   3 ?   -2.6   0.0         7     5e+03      79      95 ..     194     210 ..     190     220 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.5
                -SEEEEESGGG--HHHHHHHHH CS
       AAA_5 66 geilvlDEveraesevlnsLls 87
                 + ++lD+v   ++e++++L  
  CCE27665.1 40 YRPVFLDDVV-GNTETIERLKI 60
                4567899998.88888888864 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00064
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHH CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsL 85 
                 +v++ G pG+gK++ +  la+ l ++++ +  l  + + e  +  ++  n+ + + +++++    + ++++lDE + + s ++++L
  CCE27665.1  69 HVIISGMPGIGKTTSVLCLARQLlGDSYKEAVLELNASDERGIDVVR--NRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQAL 152
                 79******************999999998888877666654444433..5556666666665555777777777777777777766 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 7
                 HHHHHHHHHHHHSSEEE CS
       AAA_5  79 sevlnsLlslleerrll 95 
                  +v+++Ll+++e +++ 
  CCE27665.1 194 AQVVKRLLQIIEAEKVE 210
                 67889999999988776 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00089      0.64      36      91 ..      70     119 ..      54     156 .. 0.70
   2 ?   -0.2   0.0      0.87   6.2e+02     144     176 ..     134     166 ..     122     172 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00089
      AAA_25  36 allaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEds..edelrrRlr 91 
                 +++ G pg GKtt +l la  ++ ++         + +Vl ++a d    d +r+R++
  CCE27665.1  70 VIISGMPGIGKTTSVLCLARQLLGDS-Y-------KEAVLELNASDErgIDVVRNRIK 119
                 6899***************9998433.2.......33555555544411346666666 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.87
      AAA_25 144 rlvviDplsralggdensnsdvgalvealeria 176
                 +lv++D  +++++g  ++ + + +++++  r+a
  CCE27665.1 134 KLVILDEADSMTSGAQQALRRTMEIYSNTTRFA 166
                 89********99998777666666666666665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00057      0.41      20     109 ..      69     153 ..      58     166 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00057
      AAA_30  20 vavltGpAGtGKttalkal.reaweaa.ggrvi.glAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkqlaall 109
                  +++ G +G GKtt++  l r+++ ++ ++ v+ + A+ ++  +v+++ +   a+  +k++  l       +++l+i DEa  + +   +al 
  CCE27665.1  69 HVIISGMPGIGKTTSVLCLaRQLLGDSyKEAVLeLNASDERGIDVVRNRIKGFAQ--KKVT--LPP----GRHKLVILDEADSMTSGAQQALR 153
                 5799**********88777588888886666663557777777777766443333..3333..122....35699999999776555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 2698.92
//
Query:       CCE27666.1  [L=198]
Description: uncharacterized protein CPUR_01140 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-35  120.5   0.1    5.2e-35  119.8   0.1    1.4  1  Fcf1      Fcf1
    3.8e-12   46.5   0.0    7.1e-12   45.7   0.0    1.4  1  PIN_9     PIN like domain
  ------ inclusion threshold ------
       0.16   11.3   0.0       0.24   10.7   0.0    1.2  1  GCV_T     Aminomethyltransferase folate-binding domain


Domain annotation for each model (and alignments):
>> Fcf1  Fcf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   0.1   8.7e-39   5.2e-35       1      99 []      95     191 ..      95     191 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.8 bits;  conditional E-value: 8.7e-39
                 HHCTS-EEEEEEHHHHHHHHHCT..-HHHHHHHT.T.SEEE----SS---HHHHHHHHH-BTB-TT-EEEE-S-HHHHHHHHTSTT--EEEEE--EEEE CS
        Fcf1   1 ktLqakvkpliTqCviaeleklgkklkealkiak.t.ferlkCnhkkptsaddClvsvvkkkknkkryivAtqDkdlrrrlrkipgvPilyikrsvmvl 97 
                 ++L+ak++p+iT+Cv++eleklg+k++ al++a+ + + rl+C+h k+t+addClv++v+ k  ++ yiv t+Dk+l++rlrkipgvP++ ++r ++v+
  CCE27666.1  95 DCLYAKCNPMITSCVMSELEKLGPKYRLALRVARdErWTRLECDH-KGTYADDCLVDRVS-K--NRIYIVGTNDKALKQRLRKIPGVPLMSVARGKYVI 189
                 79********************************978********.**************.4..7********************************** PP

                 -- CS
        Fcf1  98 Ek 99 
                 E+
  CCE27666.1 190 ER 191
                 96 PP

>> PIN_9  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   1.2e-15   7.1e-12       1     105 [.      72     173 ..      72     186 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1.2e-15
       PIN_9   1 vilDtnaLmipvqfgvdifeelerll.gsvelvvpkavleELerlakagkgkertaakvalsL.aerceiveaeeekaDdailelakeldaavlvTnDr 97 
                 v++Dtn+L   vq ++ ++e +   l  + + ++ + v++ELe+l     +k r a +va++   +r+e  ++++ +aDd +++  ++ ++ ++ TnD+
  CCE27666.1  72 VLVDTNFLSHSVQRKLSLLESMMDCLyAKCNPMITSCVMSELEKL----GPKYRLALRVARDErWTRLE-CDHKGTYADDCLVDRVSKNRIYIVGTNDK 165
                 799******************9999989*****************....899*********98344444.4566699******999999999999**** PP

       PIN_9  98 eLkkrlle 105
                 +Lk+rl++
  CCE27666.1 166 ALKQRLRK 173
                 ******98 PP

>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     4e-05      0.24      83     113 ..     136     166 ..     125     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4e-05
       GCV_T  83 llnedGgvidDlivarldedefllvvnaank 113
                  ++++G + dD++v r++++++++v +++++
  CCE27666.1 136 ECDHKGTYADDCLVDRVSKNRIYIVGTNDKA 166
                 699*********************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1572.33
//
Query:       CCE27667.1  [L=462]
Description: probable nitrogen metabolic regulation protein nmr [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-81  272.5   0.0    3.6e-81  272.2   0.0    1.1  1  NmrA            NmrA-like family
    8.5e-08   32.3   0.0    3.1e-07   30.5   0.0    1.8  1  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
      0.087   12.2   0.0       0.14   11.5   0.0    1.2  1  DUF3798         Protein of unknown function (DUF3798)


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.2   0.0     6e-85   3.6e-81       1     231 [.      66     321 ..      66     323 .. 0.99

  Alignments for each domain:
  == domain 1  score: 272.2 bits;  conditional E-value: 6e-85
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEE.ES-TT.......................-HHHHHHHHTT-SEEEE---GG CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelv.kgdld.......................dkeslvealkgvdvvfsvtgfy 75 
                 I+v++a+Grq++s++r+++++g++vra++R++ + +a++++++++++v  g+l+                       ++++++++++g++++f++t+fy
  CCE27667.1  66 IAVTNASGRQAASFIRVATAVGYRVRAQLRNLLGVVATEVSTNPNVTViVGELYtrhepteankdvtqygpisgvgiNHDLIENLFRGAQLAFINTTFY 164
                 89******************************************99999************************************************** PP

                 S-HHHHHHHHHHHHHHHS-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS- CS
        NmrA  76 skeiedgkklvdAakeaGvkhfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgn 174
                 ++e+++g++l+dAak+aGv+h+iySs++d+  ++n ++p++p++++K+++e+yvr+l +p+tfvy+g++++nf+sl ++l+++++++++ ++++++p++
  CCE27667.1 165 GDEVHIGMALADAAKKAGVQHYIYSSMPDHA-AYNEDWPSLPLWAAKHKVEDYVRELNLPATFVYTGIYNNNFTSLTYPLFCMELQEDG-SFIWQAPFH 261
                 ******************************9.********************************************************9.********* PP

                 TTS-EE..-HHHHHHHHHHHHHHH.HHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS-EEE CS
        NmrA 175 pkavll..daeeDiGafvikilkd.prklkgkriklagntlsgneivelfekkigktvkY 231
                  +a+l+  dae+D+G+++++++kd p+ + g+ri+la+++l+++e+++lf++ +g++v+Y
  CCE27667.1 262 EDAKLPwlDAEHDVGPAILQVFKDgPTRWRGHRIALAYEYLTPKEACRLFSRGVGRPVHY 321
                 ***********************************************************9 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   5.2e-11   3.1e-07       2     149 ..      71     235 ..      71     249 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 5.2e-11
                     TTSHHHHHHHHHHHHC-T-EEEEEETT..HHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-S..EEEES---TCC......HHHH......... CS
  NAD_binding_10   2 AtGkvGrllvkellargghevtalvRn..peklaeleaeeglevvegdvtdvedlaealkgad..aVvsalggggk......deeg......... 77 
                     A+G+ +   ++ + a  g++v+a  Rn     ++e++ +++++v++g++ +  + +ea k++     +s +g +++      +  g         
      CCE27667.1  71 ASGRQAASFIRVATAV-GYRVRAQLRNllGVVATEVSTNPNVTVIVGELYTRHEPTEANKDVTqyGPISGVGINHDlienlfR--Gaqlafintt 162
                     89**************.5*********443445678899*********************99833358888777776555440..1445566666 PP

                     ........HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE-S CS
  NAD_binding_10  78 ........aknivdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLtde 149
                               +++daak+agv+++++ s  +         ++w  +l  + +aak++ e+++r+ +l  T+v  g  +++
      CCE27667.1 163 fygdevhiGMALADAAKKAGVQHYIYSSMPDHAA----YNEDW-PSL--PLWAAKHKVEDYVRELNLPATFVYTGIYNNN 235
                     777777789999**************88865431....12223.232..6789*******************99998876 PP

>> DUF3798  Protein of unknown function (DUF3798)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.4e-05      0.14     107     143 ..     162     198 ..     154     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.4e-05
                 EEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGGSH CS
     DUF3798 107 vleadaakrgkliiekakelGaktfvhysfprhlsye 143
                 ++  d+++ g  ++++ak++G++++++ s+p+h +y+
  CCE27667.1 162 TFYGDEVHIGMALADAAKKAGVQHYIYSSMPDHAAYN 198
                 6778999**************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3419.47
//
Query:       CCE27668.1  [L=235]
Description: probable C-8 sterol isomerase erg-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-96  320.8   0.1    3.4e-96  320.6   0.1    1.0  1  ERG2_Sigma1R  ERG2 and Sigma1 receptor like protein


Domain annotation for each model (and alignments):
>> ERG2_Sigma1R  ERG2 and Sigma1 receptor like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.6   0.1  1.9e-100   3.4e-96       3     209 .]      31     234 ..      29     234 .. 0.97

  Alignments for each domain:
  == domain 1  score: 320.6 bits;  conditional E-value: 1.9e-100
  ERG2_Sigma1R   3 lllllvalvylldklleknyifdpkelqelakkaiakhendtkavleeivkelkkeypdelinlleeeewvfnnaGgamGamlilhaSitEYlilFG 99 
                   l++ll+ +vy+ +++l+++yif  +el++++++a+a+h ndt+av++ i++el++++++ ++n++  e+wvfnnaGgamGam+ilhaS+tEYli+FG
    CCE27668.1  31 LTALLACMVYIAEQNLPNFYIFRLEELKDVSSRALAQHGNDTRAVVKFIADELHETHGK-MVNVE--EDWVFNNAGGAMGAMYILHASVTEYLIIFG 124
                   6789999***************************************************8.46665..9***************************** PP

  ERG2_Sigma1R 100 tavgteGhtGrhladdyftiLkGeqlaakpgelekevYkpGdvhhlkrgeakqykmeegcfaLeyarGwipsmlpFgfadtlsstlDfvtlyktvri 196
                   ta+gteGhtGrh+addyf+iL+Geq+a+ pge+++e+Y++G++hhl+rge+kqykm+egcfaLeyarGwip+ml+Fg+ad lsstlDf+tl+kt+ +
    CCE27668.1 125 TAIGTEGHTGRHTADDYFHILHGEQWAYVPGEYSPEIYPAGSIHHLRRGEVKQYKMPEGCFALEYARGWIPPMLFFGYADGLSSTLDFPTLWKTTHL 221
                   ************************************************************************************************* PP

  ERG2_Sigma1R 197 taremiknllkgk 209
                   t+r+mi nll+gk
    CCE27668.1 222 TGRQMIGNLLRGK 234
                   **********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1796.22
//
Query:       CCE27669.1  [L=626]
Description: related to Dictyostelium protein kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4697.79
//
Query:       CCE27670.1  [L=256]
Description: uncharacterized protein CPUR_01144 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-26   90.4   0.0    1.3e-25   89.9   0.0    1.2  1  NPCC      Nuclear pore complex component


Domain annotation for each model (and alignments):
>> NPCC  Nuclear pore complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.0   7.4e-30   1.3e-25       1     129 [.      20     144 ..      20     145 .. 0.93

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 7.4e-30
        NPCC   1 GswenPvlkeilrRq.vnk..ErevkriiaNvllllvfnlikklvklllklyelkkksseeslasalyaelveklirllfllniviallkLlrkqdkia 96 
                 G+w++P l+ei+rRq ++   ++++++i++N+++l++++ i+ ++k+ +       + ++ s+  + y+++++ +++l+ l++i +a+l+Llr +d+i+
  CCE27670.1  20 GTWRHPRLNEITRRQnATAftDKNIRQIAYNIFTLVALWSIRVIAKMKI-------NPQHFSSNFRTYLSWAWLVLQLIPLIQIGLACLPLLRAKDDIT 111
                 9**************877688*********************9999999.......34456778999******************************** PP

        NPCC  97 DlpLtekQrellGLkadesseeaaelvitqpry 129
                 D+pLt  QrellGL + ++s + +++  t+pry
  CCE27670.1 112 DIPLTAAQRELLGLCPLPDSPKPDAKFDTPPRY 144
                 *****************9999999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1919.91
//
Query:       CCE27671.1  [L=122]
Description: uncharacterized protein CPUR_01145 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 968.09
//
Query:       CCE27672.1  [L=122]
Description: uncharacterized protein CPUR_01146 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 938.57
//
Query:       CCE27673.1  [L=1320]
Description: related to CYC8-general repressor of transcription [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.4e-119  397.5   4.5   9.4e-119  397.5   4.5    2.7  2  Cohesin_load   Cohesin loading factor
  ------ inclusion threshold ------
       0.62   10.3   5.8       0.15   12.2   0.3    3.1  4  TPR_2          Tetratricopeptide repeat
       0.66   10.0  45.0       0.26   11.3  29.2    3.3  3  Trypan_PARP    Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> Cohesin_load  Cohesin loading factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -42.1  49.0         3   1.8e+04     146     265 ..      84     202 ..      73     248 .. 0.56
   2 !  397.5   4.5  1.6e-122  9.4e-119       4     587 ..     696    1303 ..     693    1311 .. 0.94

  Alignments for each domain:
  == domain 1  score: -42.1 bits;  conditional E-value: 3
  Cohesin_load 146 riqlslqt.dkdnsaalenlqslaelanrkgdkklfvvlslleallhlrrgspkdvlevlqeiiaaarslqldeeseqipqlkalllllellvslqk 241
                   ++ql +q+ ++  ++  ++ q ++  + +++d++      ll+ ++ +++++++  l++  ++  + ++lq++++ ++ +ql+   +l +  ++lq+
    CCE27673.1  84 QLQLQQQQqQQQQQQQQQQQQAGQFQQAQQHDQYAARQDELLRMRMAEQQRQQQQRLQQHLQL-QQQQQLQQQQQLQRQQQLQRQQQLQQ-QQQLQQ 178
                   455555556555555555555565555566777777677777766666666666666665555.34444556666666666665555433.344444 PP

  Cohesin_load 242 ddvknvkekLkalqsfldelkdkk 265
                    +    +++L++ q++ ++++ ++
    CCE27673.1 179 QQQLRQQQQLQQQQQLRQQQQLQQ 202
                   443333333333333333222222 PP

  == domain 2  score: 397.5 bits;  conditional E-value: 1.6e-122
  Cohesin_load    4 velLlslaeeyltaAhevvskv...kseeeleqYykLiatGikCLeavlkdfklpprqearvtlrLariLleETenideAeeylskailiaeknr 95  
                     +l++  aee+l +A++ v +v    + + +++Y +Liat++ CLea+l++ kl pr ear++ r+a iL eETen++eAe++l k+i++++k+r
    CCE27673.1  696 TPLMVAIAEECLGKARSSVHDVamsLDSKLVDEYQRLIATALSCLEAALQNSKLAPREEARLRMRYAAILQEETENLMEAETALGKGITLCDKHR 790 
                    6799******************987788889**************************************************************** PP

  Cohesin_load   96 lidlkfvcqfLlarllektnpkaAlksldeliedaetyqhnewvylfrllriqlslqt.dkdnsaalenlqslaelanrkgdkklfvvlslleal 189 
                    lidlk+++q+L  ++l+++n+kaAlk +d +i+d+e+++h +w+y+frll++++ ++  + + + alen + +++ an +gd+++ v +s+le+l
    CCE27673.1  791 LIDLKYCMQYLMLKVLFQRNQKAALKAVDGHISDCEAFKHVPWYYAFRLLKATFYMSMgNVSDAGALENIRAVQNVANLRGDNAMAVFASILEGL 885 
                    **********************************************************9666666****************************** PP

  Cohesin_load  190 lhlrrgspkdvlevlqeiiaaarslqldeeseqipqlkalllllellvslqkddvknvkekLkalqsfldelkdkkswsswsedgsiklkiters 284 
                     +l+++ ++  +e+++ +ia+a+++qld    +i ql++l+lll+   sl+  +++ +++kL+ lq+ lde+ +   w++  +++++++ + ++s
    CCE27673.1  886 TLLKTS-KDSNIERVNSCIAQAAKFQLDPTV-KIMQLDVLMLLLDFSSSLHHQQPDATAQKLRLLQQRLDECEQ---WNN--IKADFQIPVHKQS 973 
                    999988.9**********************9.****************************************87...677..5555555555666 PP

  Cohesin_load  285 ......................gl.klifswLpkkdllaLlYllsglvnlykkktd..ksekflqkalrqleklk.....lksnnessnslstls 349 
                                           +   ++++++k +l  L     glv+++k +++  +s++f+ +++++le        +     +s slst+ 
    CCE27673.1  974 sgakivseqtsaiirpggegdgEMdFVVMTFMTKVELRSL----VGLVSMHKPSSQarRSTEFWLEGVKILETWDeltagI--PYGPSVSLSTAI 1062
                    79*******************944468999****999865....68888988888888**************988877543..7889******** PP

  Cohesin_load  350 ekikwlsvikcyvkfyliliafvlknwkkankeleeletasnkleskllkelaplllyLeglyaqskgdlkaAlaqyk........etaarkske 436 
                     + +w+s  + y+   l l a++  +wk++++ + +let+  ++      +   l++yL+g+y+q++gdl+ Al++++        +       +
    CCE27673.1 1063 RQRAWRSDAQAYLCALLGLLAASHCQWKQVKQFMLKLETLVHSSTP---PTVELLSTYLTGIYSQGTGDLQRALDIFSsprfhfpqTPNGVRAGH 1154
                    *****************************************88877...6888899****************************9888888999* PP

  Cohesin_load  437 relyilsllNlviIlesevseddkelnkllsqleplcsnspnknislanalllattslfepisineekssllealkaakaikntqllsillnlis 531 
                     e ++l+ lN+++I++ +  ++d+++++l++ql+p+c n+ n ++++a + ++a +++ +p    ++k+++++al+++k ++n +  ++ l +++
    CCE27673.1 1155 WEMALLAGLNRLWIMQHPSCRNDHQTHELIEQLQPFCTNHWNIDLRTAWYNVIAALDTDPPQQLSQQKQHIQAALSGSKVTSNILGAAVTLCIMR 1249
                    **********************************************999999**********9******************************** PP

  Cohesin_load  532 aklfegeleeqtkkser.alqlakksidysdglWvlvaetilaqlleqlgerakaeq 587 
                    +++fe++++eq+ ks+r a ++a+ s    + lW +va+++laq++e++g+r++a q
    CCE27673.1 1250 SRFFENVIGEQALKSARaASKQAQRS---GNMLWQSVADGMLAQSYEVQGQREEAAQ 1303
                    **************************...*************************987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         3   1.8e+04      13      23 ..     104     114 ..     103     114 .. 0.80
   2 ?   -2.5   0.1       1.3   7.6e+03      19      29 ..     735     745 ..     729     747 .. 0.83
   3 ?   -3.9   0.0         3   1.8e+04      14      22 ..    1126    1134 ..    1118    1136 .. 0.68
   4 ?   12.2   0.3   2.5e-05      0.15       6      31 ..    1287    1312 ..    1286    1315 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3
       TPR_2  13 klgdyeeAlea 23 
                 ++g++++A ++
  CCE27673.1 104 QAGQFQQAQQH 114
                 68999999875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
       TPR_2  19 eAleafekAle 29 
                  Al ++e+Al+
  CCE27673.1 735 TALSCLEAALQ 745
                 5999*****97 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 3
       TPR_2   14 lgdyeeAle 22  
                   gd+++Al+
  CCE27673.1 1126 TGDLQRALD 1134
                  678888876 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 2.5e-05
       TPR_2    6 nlGlayyklgdyeeAleafekAleld 31  
                  +l+++y+ +g+ eeA++ ++kA + +
  CCE27673.1 1287 MLAQSYEVQGQREEAAQEWQKATQEA 1312
                  59********************9876 PP

>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.14   8.4e+02      54      70 ..     277     293 ..     236     324 .. 0.60
   2 ?   11.3  29.2   4.4e-05      0.26      58     111 ..     491     536 ..     469     548 .. 0.47
   3 ?    1.9   7.7     0.034     2e+02      58     118 ..     590     662 ..     582     674 .. 0.58

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.14
  Trypan_PARP  54 tngtdpepepepepepe 70 
                   ++  p+p+ +p+p p+
   CCE27673.1 277 QQSLWPQPQSQPHPSPD 293
                  22222222222222222 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.4e-05
  Trypan_PARP  58 dpepepepepepepepepepepetepeeepepepepepepepepepepepepep 111
                  +p pep  epep+p+pep pe         e+epepe e ep  ep+  p p p
   CCE27673.1 491 QPGPEPRAEPEPKPQPEPVPEA--------EEEPEPELESEPAKEPDFYPHPHP 536
                  2333333333333333333333........333333333333333333333333 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.034
  Trypan_PARP  58 dpepepepepepepepe.pepep...........etepeeepepepepepepepepepepepepepgaatlks 118
                  dpep+ e+    ep  + ++ ep           +   +++ ++e + + ep +ep+ e  pep+  +  +ks
   CCE27673.1 590 DPEPKEEKSEVEEPCMNaADTEPvtsvkasstqeQMTIKNTQKQELQVKEEPWTEPKKEVRPEPKIESVRVKS 662
                  4444444333333332222233333555554443344456667777777788888888888888777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      5588  (0.311674); expected 358.6 (0.02)
Passed bias filter:                     1079  (0.0601818); expected 358.6 (0.02)
Passed Vit filter:                       808  (0.0450667); expected 17.9 (0.001)
Passed Fwd filter:                       159  (0.00886831); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 4.04u 0.41s 00:00:04.45 Elapsed: 00:00:00.79
# Mc/sec: 5032.96
//
Query:       CCE27674.1  [L=1233]
Description: probable SH3-domain protein Cyk3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-09   35.8   1.9    2.1e-08   34.6   0.3    2.4  2  Transglut_core  Transglutaminase-like superfamily
    4.1e-08   32.8   0.1    1.1e-07   31.4   0.1    1.8  1  SH3_2           Variant SH3 domain
    2.7e-06   26.9   1.4    2.7e-05   23.7   0.1    2.8  2  SH3_1           SH3 domain
  ------ inclusion threshold ------
      0.011   15.6   0.2      0.029   14.3   0.2    1.8  1  SH3_9           Variant SH3 domain
      0.012   15.3   6.3      0.045   13.4   6.3    2.0  1  SARAF           SOCE-associated regulatory factor of calcium 


Domain annotation for each model (and alignments):
>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.76   2.7e+03      21      64 ..     463     513 ..     456     518 .. 0.71
   2 !   34.6   0.3   5.8e-12   2.1e-08      13     111 ..     781     877 ..     772     878 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.76
  Transglut_core  21 iyewvrknveysaprrtpgsrd.aeavletgk.......Gncedfaslfval 64 
                     + +  r++ +y+ ++r+++  d ++ +l+t+        Gn  +++s   + 
      CCE27674.1 463 LRQMRRQKSWYD-NGRGHAVSDtIDRTLTTRTnttnassGNQSHTSSSTQSS 513
                     667788999999.888888777799999977655555556666666665555 PP

  == domain 2  score: 34.6 bits;  conditional E-value: 5.8e-12
  Transglut_core  13 dplekakaiyewvrknveysaprrtpgsrdaeavletgkGncedfaslfvallRalGipaRvvtgylsgeeekeq.svasedaHawvevylegyg 106
                     ++ ++++ai +wv++++ ++  +   g+ d + v++++++ +e++a l   ++ a+G+++ +v gyl+++ +  + +  ++ +H+w+ v + ++ 
      CCE27674.1 781 SDVQRLRAIFTWVAEKICWE--EDFEGPVDTRRVIQSKRACAEEYAVLVMEMCVAVGLECEIVRGYLKTPGDVTDlTTIPRSNHWWNAVSV-DNE 872
                     56789***************..788888888*************************************986554488888889********.999 PP

  Transglut_core 107 WvplD 111
                     W  +D
      CCE27674.1 873 WRIID 877
                     97766 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   3.2e-11   1.1e-07       1      56 [.      15      70 ..      15      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 3.2e-11
                EEEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE...CCCEEEEEGCGEEE CS
       SH3_2  1 yvraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev...gGrvGlfPsslvee 56
                ++ra+ ++ ge+k+ L f +Gd+i +l   + +++ ww g+    +++vG fPs++ve+
  CCE27674.1 15 WCRAVYSWGGESKRDLGFMEGDLIECL---NAGDGSWWVGRLyrdRRTVGSFPSNFVEV 70
                589************************...8888899999877677999********97 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   7.5e-09   2.7e-05       1      48 []      17      65 ..      17      65 .. 0.93
   2 ?    1.0   0.2      0.09   3.2e+02      18      40 ..     848     871 ..     847     876 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 7.5e-09
                EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTS.TEEEEEEG CS
       SH3_1  1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgt.gkeGliPs 48
                +A Y   +e++ +L f++GD i+ l+  ++ Ww grl ++ + +G +Ps
  CCE27674.1 17 RAVYSWGGESKRDLGFMEGDLIECLNAGDGSWWVGRLYRDrRTVGSFPS 65
                68999999****************************9988788999997 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.09
                 TTEEEEEEEECSS.SEEEEEETTS CS
       SH3_1  18 kGDviivleksed.gWwkgrlkgt 40 
                 +GDv  +     + +Ww + + ++
  CCE27674.1 848 PGDVTDLTTIPRSnHWWNAVSVDN 871
                 577777777777779****98874 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   7.9e-06     0.029      13      49 .]      30      69 ..      18      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.9e-06
       SH3_9 13 LsLqrGDvitvieesedgWlegsl...tGrtGlvPanyve 49
                L + +GD i  ++  ++ W+ g+l     + G +P+n+ve
  CCE27674.1 30 LGFMEGDLIECLNAGDGSWWVGRLyrdRRTVGSFPSNFVE 69
                77899*******999*******944568899*******97 PP

>> SARAF  SOCE-associated regulatory factor of calcium homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   6.3   1.3e-05     0.045     210     310 ..     433     569 ..     387     589 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
       SARAF 210 gseeeqddpPppy...............................................sltksqkpssssessqqgeqeeswrpGFWtGlatGaaaG 261
                  +++  d pPpp                                                + t++ +  ss ++s+++++++s     W+G+++G+  +
  CCE27674.1 433 AETD--DMPPPPPpkgqpyqrpkssaavpgsqlrqmrrqkswydngrghavsdtidrtltTRTNTTN-ASSGNQSHTSSSTQSSARTLWSGVSAGGFSA 528
                 1122..22333223589999999********************************998853233333.3333334555566777799************ PP

       SARAF 262 YlagrrraqneeteeeekeksssWgsssegsssssssssssssasssss 310
                   ag+ ++q+ + +++  ++++           +  s++++ + +ss++
  CCE27674.1 529 TSAGSMARQQLRARSAMDTREGDLD--------RPDSPFTGVTYHSSHA 569
                 ****999976666654444422222........2222222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 8200.45
//
Query:       CCE27675.1  [L=627]
Description: related to Ste20-like kinase Don3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-69  234.1   0.0    2.5e-69  233.6   0.0    1.2  1  Pkinase         Protein kinase domain
    2.3e-49  168.0   0.0    3.3e-49  167.5   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    7.4e-06   25.0   0.0    1.5e-05   24.0   0.0    1.4  1  Pkinase_fungal  Fungal protein kinase
    7.9e-06   25.4   0.0    2.4e-05   23.8   0.0    1.7  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
       0.05   12.9   0.0      0.099   12.0   0.0    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
       0.14   12.0   0.0         27    4.6   0.0    3.2  3  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.6   0.0   8.3e-73   2.5e-69       1     264 []      10     260 ..      10     260 .. 0.93

  Alignments for each domain:
  == domain 1  score: 233.6 bits;  conditional E-value: 8.3e-73
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 y++le+lG+GsfG+Vyk++ek+tg++vA+K+i+ e+++++ + ++++Ei++l ++ +p++ +++++f +  +l++v+ey+ gg+  dll+   ++se++
  CCE27675.1  10 YQVLEELGRGSFGVVYKGIEKATGETVAIKHIDLESNDDDIQ-DIQAEIAVLSTCASPYVTQYKGSFLRGYKLWIVMEYLGGGSCLDLLK-PANFSETH 106
                 7899********************************999885.9*********************************************8.588***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                 +  +++++l g++ylHs+g iHrD+K +N+L++e g++K++DFG+a++l++ ++  ++fvgt+ ++APEv+++ +ys k+D+WslG++ +e+ +g+pp+
  CCE27675.1 107 IAIVCRELLLGIQYLHSEGKIHRDIKAANVLLSEAGKVKLADFGVAAQLTNIKSqRNTFVGTPFWMAPEVIQQDGYSFKADIWSLGITAMEMANGEPPL 205
                 *************************************************998877******************************************** PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                            +++ ++ +++i   ++   + + ++s+++kd++ ++l+kd ++R++a+ell+h+++
  CCE27675.1 206 C----------HIHPMKVLFHIP--KNAPPRLEGDFSRDFKDFIAQCLTKDYESRPSAKELLKHRFI 260
                 *..........455544444443..34555666789****************************996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.5   0.0   1.1e-52   3.3e-49       3     257 ..      12     256 ..      10     258 .. 0.95

  Alignments for each domain:
  == domain 1  score: 167.5 bits;  conditional E-value: 1.1e-52
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  + ++lG+G+fG V++g  k     + ++Va+K ++ e+++++ +++  e+++++++  p + ++ g  +++ +l+iv+ey+ gG+ l+ L+     ++
   CCE27675.1  12 VLEELGRGSFGVVYKGIEK----ATGETVAIKHIDLESNDDDIQDIQAEIAVLSTCASPYVTQYKGSFLRGYKLWIVMEYLGGGSCLDLLKPA---NF 102
                  6799*************99....9999***************************************************************998...99 PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEi 198
                  + +++  ++ ++  G++yL+s+  +Hrd+ a NvLlse  +vk++DfG+a ++  ++  +++++      WmapE++++  ++ k+D+Ws G++ +E+
   CCE27675.1 103 SETHIAIVCRELLLGIQYLHSEGKIHRDIKAANVLLSEAGKVKLADFGVAAQL--TNIKSQRNTFVGTPFWMAPEVIQQDGYSFKADIWSLGITAMEM 198
                  99***************************************************..444455555667789**************************** PP

                  HTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 199 ftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  ++ ge p+ ++++++vl ++ ++   +   + ++++++++ +c+++d e+Rp+ +el++
   CCE27675.1 199 AN-GEPPLCHIHPMKVLFHIPKNAPPRLEGDFSRDFKDFIAQCLTKDYESRPSAKELLK 256
                  99.***************************************************99976 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.9e-09   1.5e-05     311     399 ..     110     190 ..     102     191 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4.9e-09
  Pkinase_fungal 311 alrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDLES 399
                     ++r+ + g + L+   g +HrDi + N+l+      +  k  L+D+ +a +l +   +s++++ +GT+ +ma ev+++   s+  D+ S
      CCE27675.1 110 VCRELLLGIQYLH-SEGKIHRDIKAANVLLS-----EAGKVKLADFGVAAQLTN--IKSQRNTFVGTPFWMAPEVIQQDGYSFKADIWS 190
                     5667778889999.88889************.....568889***********5..6677789**************888999999855 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.89   2.7e+03      19      49 ..      15      45 ..       8      54 .. 0.82
   2 !   23.8   0.0     8e-09   2.4e-05     140     253 ..     106     208 ..      92     217 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.89
  Kinase-like 19 llkkgdrsvvfevkdqetgeplavkvfllps 49
                  l++g ++vv++  +++tge +a+k   l+s
   CCE27675.1 15 ELGRGSFGVVYKGIEKATGETVAIKHIDLES 45
                 5889999***************999776655 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 8e-09
  Kinase-like 140 kletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft...aLvragtkvvlseve.kgfaPpEllgsrggytrknktkmthklda 233
                  + ++++r ll l     +++L+++g +h ++++ n+ll e g+++l +f+   +L   + +     v    +  pE++ +           +++k d 
   CCE27675.1 106 HIAIVCRELL-L----GIQYLHSEGKIHRDIKAANVLLSEAGKVKLADFGvaaQLTNIKSQRN-TFVGtPFWMAPEVIQQ---------DGYSFKADI 188
                  4555666666.3....479*****************************982213333333333.3333222355666665.........468****** PP

  Kinase-like 234 WqlGlviyriwclklPltla 253
                  W lG+++  ++  + Pl  +
   CCE27675.1 189 WSLGITAMEMANGEPPLCHI 208
                  *********99888777665 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.3e-05     0.099      90     170 ..      79     153 ..      54     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.3e-05
         Kdo  90 yrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkar 170
                 y+  +++e l g + L+ l    a+++e+  +   +++   i+ lh+ g  H+d+ a n+ll +++    ++ l D+  a+
  CCE27675.1  79 YKLWIVMEYLGGGSCLDLLKP--ANFSETHIAIVCRELLLGIQYLHSEGKIHRDIKAANVLLSEAG----KVKLADFGVAA 153
                 667777777777777765444..4677777777778888889***********************9....99999987655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.037   1.1e+02      22      84 ..      35      95 ..      23     110 .. 0.78
   2 ?    4.6   0.0    0.0089        27     164     187 ..     122     144 ..     104     152 .. 0.76
   3 ?   -0.4   0.1       0.3     9e+02      85     111 ..     474     500 ..     452     533 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.037
                -EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH 22 ryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84
                +++ +++  + ++ +i++++a+ ++L+      P v  ++ +    + l+ ++ey++g s l+
  CCE27675.1 35 TVAIKHIDLESNDDDIQDIQAEIAVLSTCAS--PYVTQYKGSFLRGYKLWIVMEYLGGGSCLD 95
                6667777777799999999999999999955..666777778888888**********99887 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0089
                 S-EEEE-SS-SGGGEEEC..TTEE CS
         APH 164 lptvllHgDlhpgNllvdpddgrv 187
                  +++ +H+D++  N+l+  + g+v
  CCE27675.1 122 HSEGKIHRDIKAANVLLS-EAGKV 144
                 567779************.66665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHHHHHCCHHCH.-S CS
         APH  85 klsaaqlpellealgeflaalhqvdpa 111
                 + sa q++e+l++l ++ aal +vdp+
  CCE27675.1 474 QTSAMQKREALGKLSDAFAALDAVDPE 500
                 567789999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4336.65
//
Query:       CCE27676.1  [L=399]
Description: uncharacterized protein CPUR_01150 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-26   91.2   0.0    7.8e-26   90.1   0.0    1.6  1  RAI1      RAI1 like PD-(D/E)XK nuclease


Domain annotation for each model (and alignments):
>> RAI1  RAI1 like PD-(D/E)XK nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   4.3e-30   7.8e-26       1      67 [.     236     301 ..     236     302 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 4.3e-30
                 E-EESS---TTCCSGGGEEEEEEEE---SHHHHHHHHHHHHHHHHHHHHHT--EEEEEEE-TTSBEE CS
        RAI1   1 VDcvwdakpedtnksehyvELKTskkiknekqlekferKllkfWaQSfLlGiprIvvGfRdddgilt 67 
                 VD++wd kp    ++ ++vELKTs++i+++ + ++f+rKl+kfW+QSfLlG+p+I+vGfR++dgil 
  CCE27676.1 236 VDAIWDIKPAP-GEPINWVELKTSQEIRSPGDVDNFHRKLMKFWIQSFLLGVPKIIVGFRTRDGILV 301
                 9*******986.9****************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2678.36
//
Query:       CCE27677.1  [L=1287]
Description: uncharacterized protein CPUR_01151 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.02   14.1   1.0        1.5    7.9   0.0    2.8  3  HDA2-3          Class II histone deacetylase complex subunits
      0.056   13.6   8.2       0.31   11.2   0.0    4.5  4  MbeD_MobD       MbeD/MobD like
       0.14   11.8  22.7       0.22   11.1  13.0    2.4  2  Lebercilin      Ciliary protein causing Leber congenital amau
       0.17   11.8   0.3       0.41   10.6   0.3    1.6  1  DUF2000         Protein of unknown function (DUF2000)
       0.38   10.4   0.9        0.9    9.1   0.9    1.5  1  DUF2229         CoA enzyme activase uncharacterised domain (D
       0.68    9.6   8.1        1.5    8.5   8.1    1.6  1  PRP3            pre-mRNA processing factor 3 (PRP3)
        2.8    8.0  11.0       0.55   10.3   5.6    2.4  2  ABC_tran_Xtn    ABC transporter
        6.5    6.0  17.3        8.9    5.6   2.3    3.2  2  FAM76           FAM76 protein
          8    6.9  17.0       0.72   10.3  10.4    2.7  2  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.015        30      10     129 ..     647     763 ..     640     771 .. 0.67
   2 ?    7.9   0.0   0.00077       1.5     194     268 ..     802     875 ..     789     886 .. 0.73
   3 ?   -2.9   0.4       1.5     3e+03     156     197 ..    1085    1126 ..    1049    1127 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.015
                 E---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH....HHHHHHHH.HHHHHHH-GGGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHHTT CS
      HDA2-3  10 tpltelqkelteqivslhyedllkyvetsdsqeklsls...ikslticlenlslvanHPsLLvdHympkklllkelpeklaetSgKFkvlndlvnliie 105
                 +p + + + l++  +   +e++++y ++ +s+e ++     +++++ +l+ l+++   P  +    +   l  ++l +   +  gKF++l +l++++ +
  CCE27677.1 647 LPFQASIRPLYDDTLLEYKEEITQYGNVFSSEEYIEPEealVHKIDQVLDGLRNICDYPPDVTGSAI-ETLPSNQLIKYCCDGNGKFNFLFELLQGLTK 744
                 5555555556666666666666666666555555544455566666666666666666655444433.34566666666677789************99 PP

                 SS....EEEEEEE-STHHHHHHHH CS
      HDA2-3 106 rkrksslnvlvvakskkeldLiEa 129
                 ++      +l+va+s+  l+L+ +
  CCE27677.1 745 DT-----RILIVARSVELLKLLYR 763
                 98.....9*******999998755 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00077
                 T-S-EEEEEE-SST--TTSHHHHHHH----------EEEEEETTSHHHHHHHHTS-TT-HHHHHHHHHHHHHHTT CS
      HDA2-3 194 enikfdliiafDssvdtsspsveslrtqnrkknklpiirlvpinSieHvkLcfkkdedepeylekvissivvlrd 268
                 ++  fdl+i  D s+ +s   + +  +     ++  ++ lv++ SieH++L ++ d +  e+ + ++s iv+ r+
  CCE27677.1 802 DEDDFDLVIGYDYSFGSSVVGLRLEPEIPGA-RSPMVLTLVTTHSIEHIDLHIPGDLTLLERKNALVSCIVRARQ 875
                 5667888888888887766655544444443.3367999***************666666666667888887775 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.5
                  .................-SEEEEEEESS---TTTS--TT-S- CS
      HDA2-3  156 dtkknsrktkeklkkkihsltihllsttrqltkdksllenik 197 
                   +  +++ +k+++k+   + ti  l+ +   +k+ +l+++ k
  CCE27677.1 1085 KEASQKHTEKSQKKIAGLEATITRLTAGPDASKETPLSKTQK 1126
                  222334667777788899999999999999988888888766 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.7   7.4e+03      45      56 ..     443     454 ..     434     456 .. 0.70
   2 ?    3.0   0.2     0.057   1.1e+02      45      60 ..    1013    1028 ..     996    1033 .. 0.78
   3 ?    0.3   0.5       0.4   7.9e+02       6      44 ..    1036    1075 ..    1031    1111 .. 0.48
   4 ?   11.2   0.0   0.00015      0.31      28      65 ..    1154    1191 ..    1138    1194 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.7
   MbeD_MobD  45 aaLseqvtgLsq 56 
                 a Ls  v++Lsq
  CCE27677.1 443 ARLSSAVDELSQ 454
                 567777777776 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.057
   MbeD_MobD   45 aaLseqvtgLsqQVes 60  
                   aL eqv +L +QV+ 
  CCE27677.1 1013 QALAEQVSELRRQVDT 1028
                  4788999999999975 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.4
   MbeD_MobD    6 kqLLsAlEqLQqdYeqrlqeWesaf.aelqrmfeltqren 44  
                  k L+sAl+   ++Ye+   +  s++ a l   +  +++ +
  CCE27677.1 1036 KSLISALDTRIREYERTSAKIYSSHrAALEDRSTFERQAQ 1075
                  6778888888888887766655554233433333333322 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 0.00015
   MbeD_MobD   28 safaelqrmfeltqrenaaLseqvtgLsqQVesLseqv 65  
                  s +++  + ++  + ena L+eqvt+L++  e+  ++v
  CCE27677.1 1154 SLYQDATATSGALRGENASLKEQVTDLARKTEDTLGKV 1191
                  6789999999*******************998766655 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  13.0   0.00011      0.22      14     187 ..    1013    1185 ..    1004    1187 .. 0.83
   2 ?    5.8   2.1     0.005        10       9      40 ..    1203    1234 ..    1198    1241 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
  Lebercilin   14 keLqnelaelqskleelrkEnklLkrlqkrqekaLskyedteaeLpqllarhneEvrvlrerlRksqekerelekklkekeaellrlkdklkklkkL 110 
                  + L ++++el++++++ +++  l k l    + +++ ye+t a++    ++h++ ++   +  R++q +e +l+     ++++ ++ ++k+  l++ 
  CCE27677.1 1013 QALAEQVSELRRQVDTADTDT-LYKSLISALDTRIREYERTSAKI---YSSHRAALEDRSTFERQAQSAEAALQTAKEASQKHTEKSQKKIAGLEAT 1105
                  678899999999999999885.67999999999999999999876...578888888888889999999999999999999999***********99 PP

  Lebercilin  111 sedknLaereeLqkkLeeleakleekeekikeLerkleleeks..frrqlaa.ekkktkeaqeevkalqeeierlkqklk 187 
                      +    +  ++ L+++++ lee++ek ++Ler+le ++k   ++r l +  +    +++ e+++l+e++++l +k +
  CCE27677.1 1106 ITRLTAGPDASKETPLSKTQKLLEEAQEKAQTLERRLEIANKDadYARSLYQdATATSGALRGENASLKEQVTDLARKTE 1185
                  988888888888888***********************999972244555440455556789999999999999988865 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.005
  Lebercilin    9 rllkikeLqnelaelqskleelrkEnklLkrl 40  
                   l +i +L+++l e + +le ++ E++lLkr 
  CCE27677.1 1203 HLVQISDLKSQLRERDLELEHTKDELRLLKRA 1234
                  57899999999999999999999999999986 PP

>> DUF2000  Protein of unknown function (DUF2000)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3    0.0002      0.41      42     106 ..     996    1062 ..     983    1094 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
                  TTS-EE---BSS-EEEEEE-HHHHHHHHHHHHHT...T---EEEEGGGGG---HHHHHHHHTT--TT CS
     DUF2000   42 adgeahagiselPvpvlkassekLrelrekaler..egltvvdFtdaaqstksyeeyraalaatpee 106 
                   + ++ +g++ +Pv vl+a +e+  elr+++ ++  + l  +  ++  ++ + ye   a++ +++++
  CCE27677.1  996 TAATSFTGVVSVPVAVLQALAEQVSELRRQVDTAdtDTLYKSLISALDTRIREYERTSAKIYSSHRA 1062
                  5567889***********************9988645555556666666777777777776666555 PP

>> DUF2229  CoA enzyme activase uncharacterised domain (DUF2229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.9   0.00045       0.9      97     175 ..    1005    1089 ..     988    1106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00045
     DUF2229   97 qglpeviknnleeeikllspvldledkkelakqlle.......elgiskkeikkAvekAleaqkafkeelrkkgeelleeleeegk 175 
                   ++p  + ++l e+++ l   +d++d ++l+k+l++       e++++ ++i + +++Ale+ ++f++++ ++ e++l++++e ++
  CCE27677.1 1005 VSVPVAVLQALAEQVSELRRQVDTADTDTLYKSLISaldtrirEYERTSAKIYSSHRAALEDRSTFERQA-QSAEAALQTAKEASQ 1089
                  556666677777899999999999999999999998677777777**********************995.555677775555422 PP

>> PRP3  pre-mRNA processing factor 3 (PRP3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.1   0.00075       1.5      25     178 ..    1067    1259 ..    1042    1262 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00075
        PRP3   25 kGkfikqaeqlrekaqleelkkei..aeeakka.....................glesdlklaekapkkeedevpndvEW......WDavllkkkek 92  
                    +f++qa++  +  q  ++ +++  ++++k +                      l++ +kl e+a +k++     ++E        Da +      
  CCE27677.1 1067 RSTFERQAQSAEAALQTAKEASQKhtEKSQK-KiagleatitrltagpdasketPLSKTQKLLEEAQEKAQ-----TLERrleianKDADYA----- 1152
                  4445555555533333332222221122222.124333333333332211111122222222222222211.....1221111122333322..... PP

        PRP3   93 kealkeeekkke.............................keeeeesklk...kitnyveHPvplkppkektkpaakplyLTkkErKklRrqrRke 157 
                             +                             k+e++  k++     t   +H v++   k++ +++   l  Tk E + l+r rR+ 
  CCE27677.1 1153 -----------RslyqdatatsgalrgenaslkeqvtdlarKTEDTLGKVHaiqADTAIKHHLVQISDLKSQLRERDLELEHTKDELRLLKRARRET 1238
                  ...........02222222223333334444444455454322222223334435566667799999989888889999****************** PP

        PRP3  158 kekekqdkirlGLepppepKv 178 
                  ++       rlG+++p   +v
  CCE27677.1 1239 RQVSVPRSPRLGMMSPRTGRV 1259
                  ****************99887 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.9      0.68   1.4e+03      29      68 ..    1045    1082 ..    1039    1086 .. 0.70
   2 ?   10.3   5.6   0.00028      0.55      25      73 ..    1084    1144 ..    1078    1154 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.68
  ABC_tran_Xtn   29 qqkayekqqkeikkleefIerfrakakkakqaqsrekaLe 68  
                      ++ye+  ++i    +     r+  +  +qaqs e aL+
    CCE27677.1 1045 RIREYERTSAKIYSSHRAALEDRS--TFERQAQSAEAALQ 1082
                    566666666666666666655555..89999999999987 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00028
  ABC_tran_Xtn   25 rleqqqkayekqqkeikkleefIerfraka............kkakqaqsrekaLekleki 73  
                    ++e+ qk+ ek qk+i+ le+ I+r+ a              k    aq++ + Le+  +i
    CCE27677.1 1084 AKEASQKHTEKSQKKIAGLEATITRLTAGPdasketplsktqKLLEEAQEKAQTLERRLEI 1144
                    68999**********************9446666666665544445666666666665444 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   2.3    0.0045       8.9     185     277 ..     978    1067 ..     939    1109 .. 0.57
   2 ?   -1.7  12.6      0.71   1.4e+03     150     242 ..    1126    1228 ..    1085    1242 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0045
       FAM76  185 rlevskleeeklaeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakek 277 
                    +v +l +   ++ k+ ++t+++s    +s  + +++ L e++ +l++q+++ d++ l k   i++l +   e e++  + +++ ++  +++
  CCE27677.1  978 PDDVRALLD--SVKPKTMDSTAATSFTGVVSVPVAVLQALAEQVSELRRQVDTADTDTLYKS-LISALDTRIREYERTSAKIYSSHRAALEDR 1067
                  333333332..334445555666678888888899999999999999999999999988774.677777777776666554444443333332 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.71
       FAM76  150 kkkkskskkskkskekskekkaskkkskkh.............kkrssrlevskleeeklaeekesnetskk....sldsnssdhlvavtqLkeeia 229 
                  k  ++ ++k ++ +++ + ++++    ++              +++s + +v++l     ++e +      k    ++d++   hlv++++Lk +++
  CCE27677.1 1126 KLLEEAQEKAQTLERRLEIANKDADYARSLyqdatatsgalrgENASLKEQVTDLAR---KTEDTLG----KvhaiQADTAIKHHLVQISDLKSQLR 1215
                  222222222222222221111111111111111111111111122222333333331...1122222....1334589******************* PP

       FAM76  230 slkkqleqkdqel 242 
                  ++  +le+   el
  CCE27677.1 1216 ERDLELEHTKDEL 1228
                  9999987543333 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.4   0.00036      0.72       9      37 ..     605     633 ..     600     649 .. 0.66
   2 ?   -2.4   0.5       3.1   6.2e+03      29      36 ..     948     955 ..     943     964 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00036
  CENP-B_dimeris   9 gedsesesdeeeeeeeedeededeedded 37 
                     g  s  e+dee +++++d++d+d++ d  
      CCE27677.1 605 GHVSPFETDEESDDDDDDDDDDDDDSDSS 633
                     55566677777777666666666665544 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.1
  CENP-B_dimeris  29 dedeedde 36 
                     d+d+ dde
      CCE27677.1 948 DQDDSDDE 955
                     23333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1588  (0.0885716); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.50
# Mc/sec: 7808.72
//
Query:       CCE27678.1  [L=146]
Description: probable cytochrome-c oxidase chain VI precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-40  135.4   0.5      8e-40  135.0   0.5    1.2  1  COX5A     Cytochrome c oxidase subunit Va
  ------ inclusion threshold ------
      0.072   13.0   0.1        1.8    8.5   0.0    2.8  3  WD40_4    Type of WD40 repeat
       0.11   12.8   0.0       0.19   12.0   0.0    1.5  1  DUF5407   Family of unknown function (DUF5407)
       0.58   10.5   7.6          5    7.5   0.1    2.7  2  DUF3144   Protein of unknown function (DUF3144)


Domain annotation for each model (and alignments):
>> COX5A  Cytochrome c oxidase subunit Va
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.5   1.8e-43     8e-40       2     102 ..      44     142 ..      43     143 .. 0.98

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 1.8e-43
       COX5A   2 eetdeefdaryekfferediDlfelrrglnnlfayDlvPepkvieaalracrrvndfalavRilEavkekvenkkqiYeyllqelkpvleeLgistkee 100
                 eet+e+f+ar+ek f++++ D fel+r+lnn+fayDlvP+++v++aal+a+rrvndfa+avRi+E++k+kve+k+q Ye++l+elk ++eeLg+++ke+
  CCE27678.1  44 EETFESFNARFEKEFDSVH-DVFELQRNLNNVFAYDLVPSTAVVTAALKAARRVNDFATAVRIFEGIKAKVETKDQ-YEQYLDELKTLREELGVPLKED 140
                 89*****************.********************************************************.********************** PP

       COX5A 101 lg 102
                 l+
  CCE27678.1 141 LF 142
                 96 PP

>> WD40_4  Type of WD40 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.19   8.7e+02       5      12 ..      33      40 ..      29      47 .. 0.79
   2 ?    8.5   0.0    0.0004       1.8       6      34 ..      65      93 ..      64      94 .. 0.90
   3 ?   -0.1   0.0       0.2   8.9e+02      18      23 ..     139     144 ..     137     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.19
      WD40_4  5 sftVPRks 12
                s ++PR+s
  CCE27678.1 33 STSMPRRS 40
                7789***8 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0004
      WD40_4  6 ftVPRkskeeFqdDlyPdtagtepaltAe 34
                f   R+ ++ F  Dl P ta+ ++al A+
  CCE27678.1 65 FELQRNLNNVFAYDLVPSTAVVTAALKAA 93
                67789988*****************9985 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.2
      WD40_4  18 dDlyPd 23 
                 +Dl+P+
  CCE27678.1 139 EDLFPE 144
                 8****6 PP

>> DUF5407  Family of unknown function (DUF5407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.3e-05      0.19      32      66 ..      59      94 ..      41     104 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.3e-05
     DUF5407 32 isiaDmfemqmlmnhLsqLsem.stavvsasnsais 66
                 s+ D+fe+q  +n++     + stavv+a+ +a  
  CCE27678.1 59 DSVHDVFELQRNLNNVFAYDLVpSTAVVTAALKAAR 94
                5999***********98776544*******998865 PP

>> DUF3144  Protein of unknown function (DUF3144)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   4.0     0.018        82      25      50 ..       3      28 ..       2      63 .. 0.83
   2 ?    7.5   0.1    0.0011         5      22      66 ..      83     127 ..      70     133 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.018
     DUF3144 25 saallyAaARfnafvaaskfeskedl 50
                sa+ll AaAR + f aa++   +  +
  CCE27678.1  3 SASLLRAAARGSMFRAAARPAIRPRM 28
                89*************99876655555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0011
     DUF3144  22 geVsaallyAaARfnafvaaskfeskedlaaekeealeyfveeyr 66 
                  +V +a l Aa R n f++a ++ ++ + + e ++  e++ +e +
  CCE27678.1  83 TAVVTAALKAARRVNDFATAVRIFEGIKAKVETKDQYEQYLDELK 127
                 678899999************998888888888888888877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 977.64
//
Query:       CCE27679.1  [L=336]
Description: probable fatty acid elongase (FEN1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-62  211.7  21.6    1.5e-62  211.4  21.6    1.0  1  ELO       GNS1/SUR4 family


Domain annotation for each model (and alignments):
>> ELO  GNS1/SUR4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.4  21.6   8.2e-67   1.5e-62       3     248 ..      49     290 ..      47     292 .. 0.92

  Alignments for each domain:
  == domain 1  score: 211.4 bits;  conditional E-value: 8.2e-67
         ELO   3 lsspkvpiliallYlllvllgpklmknrkpfklkalvilhnlflavlSavgfvgmvkallevlkkkglvdllckddssdegrlrngllaflvllfylsK 101
                 +s+ k + +++++Y+++++ g++lm+nr+pfklkal+++hn++l+v+S +++v ++++++  l ++g+++++c    +++g +++  +++++l + l+K
  CCE27679.1  49 MSTLKSTSIFIVIYYIIIFGGRELMRNREPFKLKALFLVHNFYLTVISGILLVLFIEQFVPELYHNGVFHAIC----HRDGGWTQPMVVLYYLNY-LTK 142
                 6788889999**********************************************999999999********....677888888888888777.*** PP

         ELO 102 fvEllDTvflvlrkkqvsfLhvYHHatvmllmwaglrfatssgivfivllNsfvHaimYtYYflsalgakklvvpwkrliTslQilQfvvgllaavyll 200
                 ++EllDTvfl l+kk+++fLh+YHH +++ll++++l  +ts+++v i +lN++vH++mY+YYf+sa g++   ++wk+++T+lQi+Qf++ l +++++ 
  CCE27679.1 143 YLELLDTVFLFLKKKPLTFLHCYHHGATALLCYTQLIGSTSVSWVPI-TLNLTVHVVMYWYYFQSARGIR---IWWKEWVTRLQIIQFIIDLGFVYFAS 237
                 ***************************************77777777.*****************77666...7******************9999999 PP

         ELO 201 vsytlkk........vgCdtsqtpkaairlnllyllslllLFlnffiksylkkkkk 248
                 ++y++++        ++C+ +   ++a+++++ ++ s+l+LF++f++ +y k  k+
  CCE27679.1 238 YTYFASTyypwlpnvGSCAGE---EFAAFCGIAIISSYLVLFISFYFATYRKGGKS 290
                 9988888999****999*777...88************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2434.64
//
Query:       CCE27680.1  [L=683]
Description: uncharacterized protein CPUR_01154 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-07   29.9   0.5    7.8e-07   28.9   0.5    1.6  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.5   4.3e-11   7.8e-07       2      47 ..      48     114 ..      47     115 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 4.3e-11
  F-box-like   2 srLPdEiLlqIF......................syL.ppsdLlrlalVCrrWrrvaldtplLWrrlvl 47 
                 + LP+ +L +IF                        L +++dL+r+ +V r Wr+va   + L++ + +
  CCE27680.1  48 AALPPRVLARIFtfvcphaldesyetceesaekgCMLcDLRDLSRCVQVNRAWREVA--VQILYHSVRI 114
                 68**********999999999977777776555423779******************..558***9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4874.85
//
Query:       CCE27681.1  [L=436]
Description: uncharacterized protein CPUR_01155 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        6.9    6.0   8.0       0.96    8.8   3.6    1.8  2  DUF4820   Domain of unknown function (DUF4820)


Domain annotation for each model (and alignments):
>> DUF4820  Domain of unknown function (DUF4820)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.6   5.4e-05      0.96     141     223 ..      57     140 ..      42     146 .. 0.66
   2 ?   -3.6   0.1      0.32   5.7e+03     110     124 ..     346     360 ..     338     403 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 5.4e-05
     DUF4820 141 ltLstliCsrpgrsip....vsseldnsartlterksekesaesseskkrnkeerdaeseeessedeeeeetvkellekyanensed 223
                 +++++ +C  p+r ip     ++++++ a t+++++s++ s    +s++r+ ++ ++ ++ + + + ++++t++ +l      ns+ 
  CCE27681.1  57 QPVKYQLC--PSRGIPqcdkNNNNQQTPASTRNDNNSAT-SSPGVSSSDRSTNKLSEIESHDDNDHYNNNKTINTMLSVDNISNSSS 140
                 67888999..66656544443344444455555544444.66667777888888888888888876799*****9986444444444 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.32
     DUF4820 110 ikvrglkvkrlrkae 124
                 +k+r+++  + ++ +
  CCE27681.1 346 VKKRSKQNLQPSESH 360
                 444443333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3146.40
//
Query:       CCE27682.1  [L=705]
Description: probable glycogen synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
          0 1160.2   0.0          0 1160.0   0.0    1.0  1  Glycogen_syn     Glycogen synthase
    2.8e-06   27.4   0.6    8.9e-06   25.8   0.3    2.0  2  Glyco_transf_4   Glycosyltransferase Family 4
    1.1e-05   25.9   0.1    6.2e-05   23.5   0.0    2.1  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    4.8e-05   23.0   0.0       0.01   15.4   0.0    2.3  2  Glycos_transf_1  Glycosyl transferases group 1
    0.00015   22.2   0.0       0.13   12.7   0.0    2.5  2  Glyco_trans_1_4  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycogen_syn  Glycogen synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1160.0   0.0         0         0       1     635 [.      20     661 ..      20     664 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1160.0 bits;  conditional E-value: 0
                   EEETTTTS-SSCHHHHHHHHHHHHHHHHGGGEEEEEE--TTGGGGTEEE----SHHHHHHHHHHGGGT--EEEEEESSTT--EEEEE-GGGGSTTHH CS
  Glycogen_syn   1 evawevankvGGiytvlkskakvtteelGdnytllGplkeqkarteveeleaenealkkalkslrekGvkvlyGrwlieGapkvilfdldsaavkld 97 
                   e+a+eva++vGGiy+v+kska+vtt+e+Gd+ytllG l++++a++evee+e++n+a+ +++++++e+G+ +lyGrwlieGap+v+l+d+++a+ +ld
    CCE27682.1  20 EIATEVAHRVGGIYSVIKSKAPVTTAEYGDRYTLLGILNHASAAVEVEEMEPTNPAITATMHAMKERGIGMLYGRWLIEGAPRVLLLDTKTAYGYLD 116
                   89*********************************************************************************************** PP

                   HHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHCT----EEEEEEETGGGHHHHHHHHHTT-SEEEEEEESS-HHHHHHHHTT---TTSTT CS
  Glycogen_syn  98 ewkaelwekvkigipeedretndaiilGflvalflkefreleekkavvahfhewlaGvgliltrkrkldvatvftthatllGrylcagavdfynnld 194
                   ewka+lw+   i++p  d etn++i++G+lva+fl+ef+++e+ +av+ahfhewlaGv+l+l++kr++dv+t+ftthatllGrylcag+vdfynnl+
    CCE27682.1 117 EWKADLWSLSAIPSPPGDDETNETIVFGYLVAWFLGEFVCHETDRAVIAHFHEWLAGVALPLAKKRRIDVTTIFTTHATLLGRYLCAGSVDFYNNLQ 213
                   ************************************************************************************************* PP

                   S--HHHHHHHTT-HHHHHHHHHHHHHSSEEEESSHHHHHHHHHHSS---SEE----B-GGGT--TTTHHHHHHHHHHHHHHHHHHHTTT---S-GGG CS
  Glycogen_syn 195 kfdvdkeaGkrqiyhrycleraaahtadvfttvseitaleaehllkrkpdvvlpnGlnvkkfsalhefqnlhalkkekindfvrGhfyGhldfdldk 291
                   +fdvd+eaGkr+iyhryc+eraa+h++dvfttvs+ita+eaehllkrkpd+vlpnGlnv+kfsa+hefqnlh+++keki+dfvrGhfyGh+dfd ++
    CCE27682.1 214 HFDVDAEAGKRGIYHRYCIERAATHSCDVFTTVSHITAFEAEHLLKRKPDGVLPNGLNVTKFSAVHEFQNLHQVSKEKIHDFVRGHFYGHYDFDPEN 310
                   ************************************************************************************************* PP

                   EEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHC---T-EEEEEEE----EECB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-....--- CS
  Glycogen_syn 292 tlyffiaGryefsnkGadifieslarlnyllkvekskktvvaflilpaktnsfnvealkgqavvkqlkdtvdevkekvGkrlfekllkge....lpe 384
                   tly+f+aGryef+nkG+d+fieslarln++lk ++s++tvvaf+i+pa+t+s++vealkgqav k+l+dt  ++++++G+r+fe++lk++    +p+
    CCE27682.1 311 TLYVFTAGRYEFRNKGVDMFIESLARLNHRLKAAGSNVTVVAFIIMPAQTTSLTVEALKGQAVLKSLRDTTTMIEQSIGRRIFERSLKWHegdpMPD 407
                   *****************************************************************************************9999**** PP

                   GGGSS-HHHHHHHHHHHHHC---S---SBSBEES.-TT-HHHHHHHHTT-S--TT-SEEEEEE-S---TTSSSS---HHHHHHH-SEEE---SSBSS CS
  Glycogen_syn 385 adellkkedkvllkrailalkreslppvvthnmiddaedpilesirrvklfnkssdrvkvvfhpeflsstspllgldyeefvrGchlGvfpsyyepw 481
                   ++el++ +d+vll+r+++a+kr+ lpp+vthnm++d++dp+l++irrv+lfn++sdrvkvvfhpefl+s++p+l+ldy++fvrGchlG+f+syyepw
    CCE27682.1 408 EKELISGQDRVLLRRRLFAMKRQGLPPIVTHNMVNDHDDPVLNQIRRVQLFNHPSDRVKVVFHPEFLNSANPVLPLDYDDFVRGCHLGIFASYYEPW 504
                   ************************************************************************************************* PP

                   -HHHHHHHHTT--EEEETTBHHHHHHHHH-TTGGGGTEEEE--SSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHTHHHHHHH CS
  Glycogen_syn 482 GytpaectvmGipsvttnlsGfGcfmeeliedakdyGiyivdrrfkslddsveqlaqflyefvkksrrqriiqrnrterlsdlldwkrlGlyyvkar 578
                   GytpaectvmG+ps+ttnlsGfGc+meelie+++dyGiyivdrr k++ddsv+ql++++y+f+ ksrrqri+qrnrterlsdlldwkr+G++yvkar
    CCE27682.1 505 GYTPAECTVMGVPSITTNLSGFGCYMEELIENSSDYGIYIVDRRTKGVDDSVNQLTSYMYDFCGKSRRQRINQRNRTERLSDLLDWKRMGMEYVKAR 601
                   ************************************************************************************************* PP

                   HHHHHHH-TT.......HHHHHHHHTTTS-XXX..............XSSXXXXXXXXXX CS
  Glycogen_syn 579 klalrraypdkf..keeveelisdeelkisrpasvppspsss.vyltpsdasslqesdde 635
                   +lalrrayp +f   e+++++i   e+kisrp+svp+sp+++  ++tp+d++slqes++ 
    CCE27682.1 602 QLALRRAYPGSFtgDEDPDDFIPGVEQKISRPFSVPGSPRDRsGMMTPGDFASLQESHEG 661
                   ************55577899*******************87669*************987 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.3   2.5e-09   8.9e-06      75     169 ..     164     273 ..     133     274 .. 0.83
   2 ?   -2.0   0.0      0.88   3.2e+03       9      27 ..     335     353 ..     327     375 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.5e-09
  Glyco_transf_4  75 vvHahspaalgaallalrrrlgiplVltvHglye................krllkarlkplsrllral.errllrradrviavSeatadelrery 152
                     + H h + a++a  la +rr ++ +++t H +                  +  + a  +++ ++ r++ er + +++d +++vS+ ta e ++++
      CCE27682.1 164 IAHFHEWLAGVALPLAKKRRIDVTTIFTTHATLLgrylcagsvdfynnlqHFDVDAEAGKRGIYHRYCiERAATHSCDVFTTVSHITAFEAEHLL 258
                     55********999999999***************************999955555555666666666515666********************77 PP

  Glyco_transf_4 153 gvppekitVipnGvDle 169
                     +   ++  V+pnG +++
      CCE27682.1 259 KR--KPDGVLPNGLNVT 273
                     75..55688****9875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.88
  Glyco_transf_4   9 leLaraLarrGheVtvvtp 27 
                      +L ++L ++G +Vtvv++
      CCE27682.1 335 ARLNHRLKAAGSNVTVVAF 353
                     5677889999999999975 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.7e-08   6.2e-05      61     159 ..     149     268 ..      98     269 .. 0.69
   2 ?   -0.6   0.0      0.46   1.7e+03       8      29 ..     335     360 ..     327     408 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.7e-08
  Glyco_trans_4_4  61 ralrrllrqrrerpdvvhahsptaglaarlarrrr.giplvvtlh...................glllrrgsgavrrly.ral.errllrrada 132
                      + l +++ ++  r  + h h+++ag a  la+ rr ++  ++t h                   ++  ++  + +r +y r + er++ +++d+
       CCE27682.1 149 WFLGEFVCHETDRAVIAHFHEWLAGVALPLAKKRRiDVTTIFTTHatllgrylcagsvdfynnlQHFDVDAEAGKRGIYhRYCiERAATHSCDV 242
                      444455556899999*****************66668899*****766666666665555544322233457778889954447********** PP

  Glyco_trans_4_4 133 vlvvseaeaeelra.lgvpadrvvvvpn 159
                      +++vs+  a e++  l + +d   v+pn
       CCE27682.1 243 FTTVSHITAFEAEHlLKRKPDG--VLPN 268
                      *****99987777755555555..5555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.46
  Glyco_trans_4_4   8 aelaraLaarGheVtvlt....papa 29 
                      a+l ++L a+G  Vtv++    pa++
       CCE27682.1 335 ARLNHRLKAAGSNVTVVAfiimPAQT 360
                      55667788888889999877765444 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0041        15      13      43 ..     309     340 ..     306     374 .. 0.84
   2 !   15.4   0.0   2.9e-06      0.01      86     127 ..     485     526 ..     481     573 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0041
                      TT-EEEEEESS-TTT.TTHHHHHHHHHCCCCC CS
  Glycos_transf_1  13 ekkkiilsvgrleke.Kgvdllikafallkkq 43 
                      e+  ++++ gr e + Kgvd +i+++a+l+ +
       CCE27682.1 309 ENTLYVFTAGRYEFRnKGVDMFIESLARLNHR 340
                      6777899999*99877************9766 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.9e-06
                      HHHHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEETTTTH CS
  Glycos_transf_1  86 leellknadifvlpsisEgfGivllEAmaaglpviasnaggp 127
                       + + + +++ ++ s++E++G ++ E    g+p i++n +g+
       CCE27682.1 485 YDDFVRGCHLGIFASYYEPWGYTPAECTVMGVPSITTNLSGF 526
                      56789999******************************6665 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0022         8       4      38 ..     314     345 ..     311     378 .. 0.76
   2 !   12.7   0.0   3.6e-05      0.13      65     109 ..     484     534 ..     460     561 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0022
                      EEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES CS
  Glyco_trans_1_4   4 ilfvGrleenvkgvdllleavpllrkkdvrlvivG 38 
                      + + Gr+e ++kgvd+++e +++l ++   l  +G
       CCE27682.1 314 VFTAGRYEFRNKGVDMFIESLARLNHR---LKAAG 345
                      56789995566***********99955...33333 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.6e-05
                      HHHHHHHH-SEEEE--..---SHHHHHHHHTT-EEEE-TGGG....TTT-- CS
  Glyco_trans_1_4  65 dlaellaaadvfvaPs..egfglkllEamaaglpvVatdvgg....iaevv 109
                      d +++++ +++ ++ s  e +g++  E   +g+p ++t+++g    ++e++
       CCE27682.1 484 DYDDFVRGCHLGIFASyyEPWGYTPAECTVMGVPSITTNLSGfgcyMEELI 534
                      66789999*******************************977334445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5224.57
//
Query:       CCE27683.1  [L=472]
Description: related to microtubule-interacting protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-17   63.1  19.4    9.1e-06   26.3   0.1    6.7  7  WD40        WD domain, G-beta repeat
    5.3e-16   58.9   0.4      9e-16   58.2   0.4    1.4  1  NLE         NLE (NUC135) domain
      0.002   16.8   5.0      0.025   13.2   2.4    2.8  2  Nup160      Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.036   13.7   1.4        0.4   10.3   0.0    2.7  2  T3SS_HrpK1  Type III secretion system translocator protein, H


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.3   0.00013       0.6      10      38 .]     104     145 ..      96     145 .. 0.69
   2 !   12.9   0.1   3.4e-05      0.15       9      38 .]     161     190 ..     150     190 .. 0.79
   3 !   11.0   0.2   0.00015      0.66       8      38 .]     207     240 ..     200     240 .. 0.73
   4 !    9.9   0.0   0.00031       1.4      10      35 ..     283     310 ..     275     313 .. 0.88
   5 ?   -3.2   0.0         4   1.8e+04      21      29 ..     336     344 ..     327     349 .. 0.71
   6 !   26.3   0.1     2e-09   9.1e-06       6      38 .]     365     399 ..     362     399 .. 0.92
   7 ?    0.9   0.0      0.22   9.9e+02      21      36 ..     447     463 ..     430     463 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                 S.SSEEEEE....EETTSSE........EEEEETTSEEEEEE CS
        WD40  10 H.ssvtsla....fspdgaw........lasGsdDgtvriWd 38 
                 H ++v+s++    + p g+         +as+s+Dg vr+W+
  CCE27683.1 104 HdDWVSSVDvlsaTAPAGKRadglindrVASASYDGLVRVWN 145
                 645577775555544444446666666689999********8 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.4e-05
                 SS.SSEEEEEEETTSSE.....EEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgaw.....lasGsdDgtvriWd 38 
                 GH   v+++      +w     +as++ D++v +Wd
  CCE27683.1 161 GHtARVNAV------RWlspnkVASAGLDRKVIVWD 190
                 9*666****......7755554577788*******9 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00015
                 E..SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 t..GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +  GH +++++++++   + ++++s Dg v +W+
  CCE27683.1 207 ElwGHeKNINAIDVNCGTKRILTASSDGRVGLWS 240
                 344**999****96666666666655*******5 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00031
                 S.SSEEEEEEETTSSEEE.EEETTSEEE CS
        WD40  10 H.ssvtslafspdgawla.sGsdDgtvr 35 
                 H s vt+  f+p+ a +a s+s D+tv+
  CCE27683.1 283 HdSQVTAAIFHPHDATVAySASQDHTVK 310
                 9666*************98********8 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 4
                 TSSEEEEEE CS
        WD40  21 dgawlasGs 29 
                 +++++a+Gs
  CCE27683.1 336 NNSLIAAGS 344
                 455688887 PP

  == domain 6  score: 26.3 bits;  conditional E-value: 2e-09
                 EEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 tl+GH + v sl+ sp++++ l+sGs D t+r+Wd
  CCE27683.1 365 TLRGHvNMVVSLSASPENDYsLVSGSHDSTCRVWD 399
                 89***77799**********989**99*******9 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.22
                 TSSE.EEEEETTSEEEE CS
        WD40  21 dgaw.lasGsdDgtvri 36 
                 d++w ++s+++D++v i
  CCE27683.1 447 DKSWgIVSAGEDKKVQI 463
                 56669888999*99976 PP

>> NLE  NLE (NUC135) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.4     2e-19     9e-16       1      65 []       8      74 ..       8      74 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 2e-19
         NLE  1 vqvrFvtkdedeslavpgtplsvPasltrkqLselvnk..Llkee.kpvpFdFlidgellrtsLeehL 65
                v+v F+t+++d +l+ ++ +l vPa+++r++Ls ++n+  +l+ + +pvp+dFl++g++lrts++++L
  CCE27683.1  8 VKVIFTTDEQDLQLPETKRQLLVPADIKRYGLSRILNSesMLD-TsSPVPLDFLVNGTFLRTSIQDYL 74
                7899****999889999********************999999.4488******************97 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.0    0.0096        43     187     255 ..      81     154 ..      60     173 .. 0.69
   2 !   13.2   2.4   5.6e-06     0.025     215     324 ..     281     401 ..     255     422 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0096
                 E-------B--TTTT...TSS--SS---TT-ECEEEEET........TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 187 fepksfllslsgllg..lladpsrrksgasvalsldvavavvei...gqtylfalsrdgkLrvWnlltgkclat 255
                  e +  l+ ++ l++   +a +  ++  +sv++ +++a+a  ++    ++ ++++s dg +rvWn + + ++ t
  CCE27683.1  81 SETALTLQYVRSLIPpvYQASFQHDDWVSSVDVLSATAPAGKRAdglINDRVASASYDGLVRVWNPSGDIIATT 154
                 5555666666677665445555555555666666666666666677778999*************888877766 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 5.6e-06
                 -ECEEEEET......TTTEEEEEETT-EEEEEETTTTEEEEE.EE--..........-SSSTTS--SSEE.SEEESSSSEEEE............E--G CS
      Nup160 215 valsldvavavvei.gqtylfalsrdgkLrvWnlltgkclat.idll.........rdeeaqdessskst.ldpaesslirvs..dggqsylvvtysps 299
                 ++ +++v+ a+ +  + t+++++s+d++++  +l+t++ ++   ++          + ++a+ +s++  t ldp es  + ++   +g++ +vv +s+s
  CCE27683.1 281 PMHDSQVTAAIFHPhDATVAYSASQDHTVKTIDLTTQREVSRlTTMHpilcaaalnNSLIAAGSSARHITlLDPRESATSTAAmtLRGHVNMVVSLSAS 379
                 345667888888889***************************667669*******98899998888876626777777777779999*********988 PP

                 GG-EEEEEEEEEEE-...SSSEEEE CS
      Nup160 300 sggefkvwkvkkedtsvslglvdlf 324
                  ++  +++  + ++t    ++ dl 
  CCE27683.1 380 PENDYSLVSGSHDST---CRVWDLR 401
                 888777776333333...4555555 PP

>> T3SS_HrpK1  Type III secretion system translocator protein, HrpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0     9e-05       0.4     122     173 ..     173     226 ..     140     237 .. 0.76
   2 ?    0.8   0.8     0.069   3.1e+02      79      96 ..     244     261 ..     239     353 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9e-05
  T3SS_HrpK1 122 nadkqsggglttkedladL.qknaglsaalknaakawstdGlfdaldra.Gedk 173
                 + +k    gl +k  + d  + ++g+s++lk++ ++w+++  ++a+d   G+++
  CCE27683.1 173 SPNKVASAGLDRKVIVWDYtEAEDGFSGSLKHSMELWGHEKNINAIDVNcGTKR 226
                 44566667778888888987889***********************97767765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.069
  T3SS_HrpK1  79 kkhPdaDadslelvrsaa 96 
                 ++ P+aD++sl +++s+ 
  CCE27683.1 244 RAAPQADPESLPTAHSTK 261
                 567888888888887753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3569.86
//
Query:       CCE27684.1  [L=401]
Description: related to werner syndrome helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-17   61.5   0.0      1e-16   61.2   0.0    1.1  1  DNA_pol_A_exo1  3'-5' exonuclease
  ------ inclusion threshold ------
        0.1   11.6   0.0       0.17   11.0   0.0    1.2  1  DUF444          Protein of unknown function (DUF444)


Domain annotation for each model (and alignments):
>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   1.1e-20     1e-16       3     174 ..     185     370 ..     183     372 .. 0.86

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 1.1e-20
                     EEHSHHHHHHHHHHHTTSS.EEEEEEEEE-SSSTTS..SEEEEEEEEECS..SEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHH CS
  DNA_pol_A_exo1   3 ivtdeeeleelieelknlk.vvavDtEttsldlisa..tlvliliqlgek..eeayiidplelgddvalealkrlledenitkvghnakfDlevl 92 
                     + t +e +e +++++   + v+++D E+ +  ++++  ++ + liq+      + +++  +  +d++  + l+++led++++kvg +++ D    
      CCE27684.1 185 YCTSNESMETVCKKYFLGEdVLGFDLEWLASATREDgaRDNVSLIQIASPdhIALFHLAVFPPTDELLSHTLRKILEDATVSKVGVSIRGDCTRV 279
                     56788999999999865556********999998776799********9966777888888888888**************************** PP

                     HHHHTS--SSEEEH.HHHHHHTTHSTT.........SSHHHHHHHHHSB---GHCC..TTSSTTTSSS-HHHHHHHHHHHHHTHHHHHHHHHHH CS
  DNA_pol_A_exo1  93 ardfgielenlfdt.mlaayvldyers.........hsLdsLaekylgdleldkee..qiakwqkarplleeqllYAaeDadvllrlfkkLtke 174
                     +++ g+ + ++f++ +l +++  +e +         +sL++ +e++lg l l ke     ++w  +++l ++qllY a Da++ ++lf+ L+++
      CCE27684.1 280 KNNLGVSVNGIFELsHLYNQIKHTEAKtakrinktvVSLAKQVEEMLG-LPLFKEGsvRSSDW--TKVLNQQQLLYSASDAYAGIQLFHVLEEK 370
                     ************9988888888888889********************.66644430034444..6************************9976 PP

>> DUF444  Protein of unknown function (DUF444)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.9e-05      0.17     131     185 ..      75     128 ..      71     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.9e-05
      DUF444 131 PdLekkklekveekktkragytrkGspsnldvkrtlrealkRrialkrpkeeelr 185
                 P+Le ++l++v+  ++ ra+++++ ++++l++ ++l+ al Rr a +r+++ + +
  CCE27684.1  75 PRLESTRLSRVSP-AKARADIASQHVSTTLNIPKSLKWALTRRFAKSRERKVQSK 128
                 7788888877765.4579*****************************95444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3102.48
//
Query:       CCE27685.1  [L=80]
Description: probable u6 snrna-associated sm-like protein lsm5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-22   79.4   0.1    1.3e-22   79.3   0.1    1.0  1  LSM       LSM domain
     0.0061   16.7   0.0     0.0071   16.5   0.0    1.1  1  SM-ATX    Ataxin 2 SM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.1   1.4e-26   1.3e-22       2      67 .]      10      74 ..       9      74 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 1.4e-26
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEGGGEEEEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRGnnivlisl 67
                +++k+++++++v +k+++e++GtL+gfD+++N+vLedv+e++ ++ + +kl ++l++Gnni+++++
  CCE27685.1 10 LIDKCVGSRIWVVMKGDKEFSGTLVGFDDYVNMVLEDVTEFDYTG-NHTKLPKILLNGNNICMLIP 74
                689******************************************.*****************986 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.9e-07    0.0071       7      51 ..      10      52 ..       8      75 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.9e-07
                HHHTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS CS
      SM-ATX  7 lltslvGkevevtvknGevyeGifstvslekdfsvvLkmarkvkk 51
                l+ ++vG+++ v +k ++ ++G + +++    ++ vL+ + + + 
  CCE27685.1 10 LIDKCVGSRIWVVMKGDKEFSGTLVGFDD--YVNMVLEDVTEFDY 52
                7899*************************..99999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 634.09
//
Query:       CCE27686.1  [L=132]
Description: related to DNA-directed RNA polymerase 13.3K chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-20   73.2   0.0    1.4e-20   72.8   0.0    1.1  1  RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
    9.8e-05   21.7   0.0    0.00036   19.9   0.0    1.8  1  RNA_pol_L    RNA polymerase Rpb3/Rpb11 dimerisation domain
  ------ inclusion threshold ------
       0.65   10.1   2.1         17    5.6   0.3    2.7  2  zf-CHCC      Zinc-finger domain


Domain annotation for each model (and alignments):
>> RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   2.3e-24   1.4e-20       3      74 ..      32     103 ..      30     104 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 2.3e-24
                  EEEEES--HHHHHHHHHHHTTSTTEEEEEEECSSTTTSEEEEEEEESTSS-HHHHHHHHHHHHHHHHHHHHH CS
  RNA_pol_L_2   3 tfeingEDhTLgnlLrhlllknpsVefagYkipHPlepkmnlriqtkssnnpleaLkkalkdlldicdelee 74 
                   f +n+EDhTLgnlL ++l  +p+V +agYk  HP  p++ +r qt+++++p+e++   +++l++++++l++
   CCE27686.1  32 DFVLNKEDHTLGNLLAEHLKAHPNVYMAGYKLGHPNVPQLFIRLQTDGTKSPREVFCYVCERLINQLESLHQ 103
                  79*****************************************************************99976 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   6.1e-08   0.00036       2      69 .]      33      98 ..      32      98 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 6.1e-08
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  2 fllrgvdhtlgNaLRrillsevpgvaiea........pvvkvntdkdklilevetdgslkPeealkeAlkiLkekl 69
                f+l+++dhtlgN L   l    p v +++        p         +l+++ +tdg+ +P+e++ + ++ L+++l
  CCE27686.1 33 FVLNKEDHTLGNLLAEHLK-AHPNVYMAGyklghpnvP---------QLFIRLQTDGTKSPREVFCYVCERLINQL 98
                8999*************99.78*******999998555.........5************************9986 PP

>> zf-CHCC  Zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.012        70      14      20 ..      52      58 ..      43      59 .. 0.83
   2 ?    5.6   0.3    0.0028        17      12      33 ..      62      91 ..      59      94 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.012
                EEEEEEE CS
     zf-CHCC 14 GHPrvyi 20
                 HP+vy+
  CCE27686.1 52 AHPNVYM 58
                7*****8 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0028
                TSEEEEE...EEE--.....TTSEEEETTT CS
     zf-CHCC 12 alGHPrv...yield.....kkgpvdCgYC 33
                 lGHP+v   +i l+      + +v C  C
  CCE27686.1 62 KLGHPNVpqlFIRLQtdgtkSPREVFCYVC 91
                799*98866688888555544455666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 985.37
//
Query:       CCE27687.1  [L=951]
Description: probable matrix AAA protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-65  219.7   0.0    4.8e-65  219.0   0.0    1.4  1  Peptidase_M41  Peptidase family M41
    2.7e-41  141.1   0.4    1.3e-40  138.9   0.0    2.3  3  AAA            ATPase family associated with various cellular
      3e-14   52.6   0.1    7.8e-14   51.2   0.1    1.7  1  AAA_lid_3      AAA+ lid domain
    5.4e-07   29.9   0.0    1.7e-06   28.3   0.0    1.9  1  FtsH_ext       FtsH Extracellular
      0.004   17.2   0.1      0.019   15.0   0.1    2.1  1  AAA_5          AAA domain (dynein-related subfamily)
     0.0049   16.1   0.0     0.0088   15.3   0.0    1.3  1  TIP49          TIP49 P-loop domain
     0.0055   16.4   0.0      0.014   15.2   0.0    1.7  1  LexA_DNA_bind  LexA DNA binding domain
  ------ inclusion threshold ------
      0.014   15.6   0.0       0.13   12.4   0.0    2.6  2  AAA_2          AAA domain (Cdc48 subfamily)
      0.015   15.1   0.0      0.049   13.4   0.0    1.9  1  RuvB_N         Holliday junction DNA helicase RuvB P-loop dom
      0.015   15.6   0.1        1.5    9.0   0.1    3.1  3  AAA_22         AAA domain
      0.022   15.1   0.7       0.65   10.4   0.1    2.9  3  AAA_16         AAA ATPase domain
       0.13   12.4   0.1       0.66   10.1   0.0    2.3  2  AAA_33         AAA domain
       0.14   11.9   0.0       0.35   10.6   0.0    1.6  1  IstB_IS21      IstB-like ATP binding protein
        1.9    7.3   8.6        1.6    7.7   0.0    2.2  2  DUF913         Domain of Unknown Function (DUF913)


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.0   0.0   3.7e-68   4.8e-65       2     190 ..     714     893 ..     713     894 .. 0.96

  Alignments for each domain:
  == domain 1  score: 219.0 bits;  conditional E-value: 3.7e-68
                    X--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS.-----------TSS--BHHHHHHHHHHHHHHHHHHHHHHHS-BGGGHHHHHHHHH CS
  Peptidase_M41   2 visekekklvAyHEaGHalvglllkeadpveKvtiiPRgq.alGltlslPeedklsltkeellarlavllGGraaEelifgevttGasnDlekatk 96 
                    v++ +ekk+vAyHEaGHa++g++l  adp+ Kv+iiPRgq +lG++++lP++  + ++ ++l++r+a+++GGr++Eel+f +vttGas+D++k++ 
     CCE27687.1 714 VLRPEEKKTVAYHEAGHAICGWFLRYADPLLKVSIIPRGQgTLGYAQYLPQDA-YLMNTNQLMDRMAMTMGGRVSEELHFPTVTTGASDDFKKVSG 808
                    67899*********************************************988.89**************************************** PP

                    HHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE-HHHHHH CS
  Peptidase_M41  97 iarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealaeaLlekEtldaeeiee 190
                    +ar+mvt++Gms k+Gp+ ++++++ +         +k+++e+ta++id ev+++v+eay+r+k++l+ek+ e+  +ae+Ll+kE+l ++++ +
     CCE27687.1 809 MARSMVTQWGMSAKVGPIFFDNDAN-Q--------FQKPFAEATAKDIDLEVHRIVDEAYKRCKDLLTEKKAEVGIIAEELLKKEMLVRDDMVR 893
                    *******************999777.3........469***************************************************99976 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       3.8   4.9e+03      48      74 ..     225     252 ..     208     266 .. 0.58
   2 !  138.9   0.0   9.9e-44   1.3e-40       2     132 .]     497     631 ..     496     631 .. 0.95
   3 ?   -2.1   0.0       3.8   4.8e+03      26      53 ..     839     869 ..     786     908 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.8
                 HHHHHHHHTS.TSEEEEEETGGGHHHHH CS
         AAA  48 elfkeakeka.kpsilfiDEidalaksr 74 
                 e ++e+++k+ kp  +++DE  +   ++
  CCE27687.1 225 ERLAELEAKEgKPGSIMFDEDSKSKDKQ 252
                 3444444444679999999955554444 PP

  == domain 2  score: 138.9 bits;  conditional E-value: 9.9e-44
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.....TTCCCHHHHHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.....sgseseeeervvnqLlteldg 95 
                 +l GppGtGKTllaka a e+gv+f+++sgse+++++vg +++++r+lf+e +++a p+i+fiDEida++++r       + ++e+e ++nq+lte+dg
  CCE27687.1 497 ILAGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEMFVGVGPSRVRDLFAEGRKNA-PCIIFIDEIDAIGRARqdtgkGFGGNDEREATLNQILTEMDG 594
                 799****************************************************9.****************998744448999************** PP

                 TTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  96 vkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 ++++e+ v+v++ tnr d ld+al+r gRfdr+i+i++
  CCE27687.1 595 FNTREQ-VVVLAGTNRADVLDKALMRpGRFDRHIYIDR 631
                 ***866.****************************975 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.8
                 EEEEETTTCSSS...STTHHHHHHHHHHHHH CS
         AAA  26 fleisgsellsk...yvgesekkirelfkea 53 
                 f e  ++++  +   +v e+ k+ ++l++e 
  CCE27687.1 839 FAEATAKDIDLEvhrIVDEAYKRCKDLLTEK 869
                 3333333332112334455555555555443 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.1   6.1e-17   7.8e-14       6      44 ..     660     698 ..     654     699 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 6.1e-17
   AAA_lid_3   6 eLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 +LA +T+G+SGAD+a++++eAal A r + +e++me+fe
  CCE27687.1 660 RLATLTPGFSGADIANVVNEAALIAARGDAEEVKMEHFE 698
                 79************************************8 PP

>> FtsH_ext  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.3e-09   1.7e-06       8     108 ..     298     393 ..     291     394 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.3e-09
    FtsH_ext   8 allllllllslfggsgtgstkeisyseFl.edleqgnvekvvvqestisalirrptgdgvs.ttkkgnstttystptlgsvesleekLeealkskgvdv 104
                 +++ + l+++ f +s+  s ke++++e + + l++g ++k vv+++++       +  +     +   +++ ++++t+gsves+e+kLeea+ ++g+ +
  CCE27687.1 298 LTVGISLWAMDF-LSKPFSEKELTWQEVRsAFLDKGLIQKLVVVDGSQV------RVELHPdAMQGHVGPSKTFVFTIGSVESFEKKLEEAQDQLGIPS 389
                 445555666666.99999**********99**************99999......6666664666667777788999999*****************99 PP

    FtsH_ext 105 essp 108
                 ++++
  CCE27687.1 390 SQRI 393
                 9876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.5e-05     0.019       3     134 ..     497     617 ..     495     620 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHH..HHSSEEE.. CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlsl..leerrllle 97 
                 +L GppGtgK+ la+  a   + ++  v ++++ +    +g+ ++           l  ++r   ++i+++DE++ + ++ +++       +er+  l+
  CCE27687.1 497 ILAGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEMFVGVGPSRV---------RDLFAEGRknAPCIIFIDEIDAIGRARQDTGKGFggNDEREATLN 586
                 8*******************************9988777777777.........7777788877899999***99998777766554411566777777 PP

                 -SSSEEE---......-EEEEEESS--.-TT-TTHHH CS
       AAA_5  98 eggelvkaknddllerfrviatanpldrslnelspal 134
                 +  ++++  n    e++ v+a +n++d     l++al
  CCE27687.1 587 QILTEMDGFN--TREQVVVLAGTNRAD----VLDKAL 617
                 7666666655..356688888888888....555555 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.9e-06    0.0088      51      89 ..     494     530 ..     464     535 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.9e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevy 89 
                 r+ +laGp+gtGkt la a + e g  vpf ++sgse+ 
  CCE27687.1 494 RGAILAGPPGTGKTLLAKATAGESG--VPFYSVSGSEFV 530
                 7889*****************9977..*********975 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-05     0.014       2      36 ..     168     202 ..     167     208 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
                    X---HHHHHHHHHHHHHHHHHSS---HHHHHHHHT CS
  LexA_DNA_bind   2 kkLTerQrevldlikasieetgypPsireiaralg 36 
                    k L e+Q+ +++ +++ +++tg pP +r+i ++++
     CCE27687.1 168 KRLPEAQAAIVERVVRVLQKTGSPPEMRDILKKMR 202
                    67999**************************9997 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.9e-05      0.13       7      85 ..     497     570 ..     494     593 .. 0.82
   2 ?   -1.9   0.0       2.4   3.1e+03      38      67 ..     643     672 ..     625     677 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.9e-05
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.EEEEETGGG----.-- CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.ivllDEidKihpk.es 85 
                 +l+gp g+Gkt+laka+a    v    ++  +  se+ e   +   v    +   +  g+++   i+++DEid i +  + 
  CCE27687.1 497 ILAGPPGTGKTLLAKATAGESGV----PFYSVSGSEFVE---MFVGVGPSRVRDLFAEGRKNAPcIIFIDEIDAIGRArQD 570
                 689******************98....************...66667777777777766666658********99985433 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
                 EEGGG-------THHHHHHHHHTTT-HHHH CS
       AAA_2  38 adaselleeeevehlvsrligappgyvgae 67 
                 +  +++ ++e+ ehlv rl    pg  ga+
  CCE27687.1 643 VYLKKIVTNEDEEHLVGRLATLTPGFSGAD 672
                 5556778899********999999988775 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.8e-05     0.049      37      69 ..     497     529 ..     488     571 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.8e-05
      RuvB_N  37 llyGpPGlGkttlakiiakelgvklkitsgPvl 69 
                 +l+GpPG Gkt lak  a e gv + + sg   
  CCE27687.1 497 ILAGPPGTGKTLLAKATAGESGVPFYSVSGSEF 529
                 799**********************99999754 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.2   5.4e+03      72     101 ..     313     344 ..     291     347 .. 0.77
   2 ?    9.0   0.1    0.0012       1.5       9      24 ..     497     512 ..     493     525 .. 0.88
   3 ?    2.5   0.0      0.13   1.7e+02      84     132 ..     543     609 ..     536     613 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.2
      AAA_22  72 rlsseell.ealeqalrarav.ielliiDEaq 101
                 + s++el  + ++ a+ +++  ++l+++D  q
  CCE27687.1 313 PFSEKELTwQEVRSAFLDKGLiQKLVVVDGSQ 344
                 55677777788888888888888889999765 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0012
      AAA_22   9 vvtGesGtGKTtllrr 24 
                 ++ G++GtGKT+l++ 
  CCE27687.1 497 ILAGPPGTGKTLLAKA 512
                 789**********997 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.13
      AAA_22  84 qalrarav..ielliiDEaqhlr...s............eealeeLrsllnl.srkgvqliLvGtpe 132
                 + + + ++  + ++ iDE++ +    +            e+ l+++ + ++  ++    ++L+Gt+ 
  CCE27687.1 543 DLFAEGRKnaPCIIFIDEIDAIGrarQdtgkgfggnderEATLNQILTEMDGfNTREQVVVLAGTNR 609
                 5555555566789********9766515566777776667777777444443558888888888875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       6.4   8.2e+03     106     127 ..     144     182 ..     111     200 .. 0.51
   2 ?   10.4   0.1   0.00051      0.65      19      45 ..     488     514 ..     483     534 .. 0.83
   3 ?    1.7   0.0      0.23     3e+02     127     154 ..     545     571 ..     516     590 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.4
      AAA_16 106 a..............avpelagaea...srllellkrll 127
                 +              ++++l+g+++   ++ ++ + r +
  CCE27687.1 144 KaaplpegwirlsevEIGQLKGEAKrlpEAQAAIVERVV 182
                 133344444444445333333333333333333333333 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00051
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrell 45 
                 + +  p+  +l G++G+GK+ l+++ +
  CCE27687.1 488 LGAKIPRGAILAGPPGTGKTLLAKATA 514
                 5566678999************98765 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.23
      AAA_16 127 lallsrderplvlvlDdlqwadeaslql 154
                 +a  ++   p ++++D+++ +  a ++ 
  CCE27687.1 545 FAEGRK-NAPCIIFIDEIDAIGRARQDT 571
                 444445.568*********887777665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00052      0.66       3      29 ..     497     525 ..     496     574 .. 0.83
   2 ?   -2.7   0.0       4.6   5.9e+03     117     139 ..     685     703 ..     683     705 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00052
      AAA_33   3 llvGlpGsGKstlaerllkklg..avlls 29 
                 +l G+pG+GK+ la+  + + g  ++ +s
  CCE27687.1 497 ILAGPPGTGKTLLAKATAGESGvpFYSVS 525
                 689*************9999886655555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.6
      AAA_33 117 kRaangddrsevpeealdrqkar 139
                 +R +    + ev++e+++r ++r
  CCE27687.1 685 ARGD----AEEVKMEHFERAIER 703
                 4444....468999999998766 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00027      0.35      50      69 ..     496     515 ..     444     536 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
   IstB_IS21  50 ivllGpsGvGKshlaialgv 69 
                  +l Gp+G+GK+ la a + 
  CCE27687.1 496 AILAGPPGTGKTLLAKATAG 515
                 689************99765 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   5.5      0.19   2.4e+02     288     310 ..      75     130 ..       8     150 .. 0.35
   2 ?    7.7   0.0    0.0012       1.6     237     355 ..     215     336 ..     170     341 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.19
      DUF913 288 k.......................ssededvemeda....................eeetesesde 310
                 +                       +                               +++t+ +++e
  CCE27687.1  75 SgltsdkdkdqpdlsstdkkkvasD----------LptdekineselsstdtkkesDQPTDRDASE 130
                 1222222112223322222223330..........1333333333333333222111112222221 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0012
      DUF913 237 aiikavikmlarvvelgkeka..akllvedassasskseasssssssetkeeekssededvemedaeeetesesdeseeseeekekns..........l 323
                  +++a +++++r+ el  +     +++ ++   ++sk+++++++   et+e++ks++++d    d+ ++++ + ++++++e+     s           
  CCE27687.1 215 RMMRAAFRIVERLAELEAKEGkpGSIMFDE--DSKSKDKQKKTD---ETDETDKSEAESD----DSGSNQQGPGKQPKNPEK-----SgyltalnvglT 299
                 456666666666666654444221222211..122222222222...2222222222222....111222222222222222.....123334556766 PP

      DUF913 324 ldyilnvakFLeallsnns.....lcreFvekgGiel 355
                 +   l ++ FL++ +s ++       ++F++kg i+ 
  CCE27687.1 300 VGISLWAMDFLSKPFSEKEltwqeVRSAFLDKGLIQK 336
                 6777788999999998888666655566766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1218  (0.0679346); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.93u 0.29s 00:00:01.22 Elapsed: 00:00:00.43
# Mc/sec: 6598.35
//
Query:       CCE27688.1  [L=619]
Description: related to chloride-bicarbonate anion exchanger AE2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-82  278.3  11.2    4.3e-46  157.8   5.2    2.1  2  HCO3_cotransp  HCO3- transporter family
  ------ inclusion threshold ------
       0.15   12.0  12.3       0.13   12.2   4.2    3.0  2  TNFR_16_TM     Tumor necrosis factor receptor member 16 trans
        2.5    7.7   6.6        6.6    6.3   0.2    3.2  3  PepSY_TM       PepSY-associated TM region


Domain annotation for each model (and alignments):
>> HCO3_cotransp  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.8   5.2   7.1e-50   4.3e-46       6     177 ..      47     218 ..      44     221 .. 0.96
   2 !  124.7   0.4   7.6e-40   4.5e-36     245     489 ..     219     475 ..     215     496 .. 0.88

  Alignments for each domain:
  == domain 1  score: 157.8 bits;  conditional E-value: 7.1e-50
  HCO3_cotransp   6 rlfgGLveDikrrlplYlsDftdalnlqclasvlFlYfaclspaitFGgLlgeategaigvseslvsaaisgilfalfagqpllilgstgPllvfe 101
                    +l++G+++D++rrlp+Y+sD+ da   +++ +++++Yfa+++pa++F+  + ++t  + gv e+l++ +++ ++fa+fa+qpl+i+g tgP+ vf+
     CCE27688.1  47 HLCRGMINDVRRRLPFYTSDWLDAWDYRVVPATVYMYFANILPALAFSLDMFSKTGSNYGVNEVLLASVLGSLVFAFFAAQPLVIVGVTGPITVFN 142
                    789********************************************************************************************* PP

  HCO3_cotransp 102 kilykfckelgldylslrvwiglwlalillilvatdasalvkyitrfteeifallIslifiyealkkllkifkkyp 177
                      +y++ k++g+dy+s+ +wig+w  ++ +il++t+ +  ++++trf  +if +++++i++ + ++ l ++  + p
     CCE27688.1 143 YTVYDIMKDTGVDYISFMAWIGIWSLILHVILAVTNSCNALRWVTRFPCDIFGFYVAFIYLQKGIQVLEHLGYSAP 218
                    *************************************************************999988877766665 PP

  == domain 2  score: 124.7 bits;  conditional E-value: 7.6e-40
  HCO3_cotransp 245 allsliLflgtfllalfLkkfkksrflptkvRelisDfavliailvmvlvdvllgvetpklevpe...efkptsekrgwlinpleknpwwlvlaav 337
                    + ls++ +l  f++a++  ++ +s+ +++ +R ++ D++ ++++++++ + ++  ++  +lev      f+pts +++wl+  + ++ +  +++a+
     CCE27688.1 219 FYLSIVAALLVFMVAYICGEVGTSSLFRHPIRVFLKDYGTPLTVIFFTGFVHMGRMRDVDLEVLPtgiAFEPTSGRSSWLV-RFWDLGVGDIFIAL 313
                    67999******************************************9999999988888888554668****99*****9.78899********* PP

  HCO3_cotransp 338 lpallvtiLifmdqqitavivnrkenkLkKgsgyhlDLlvvavlilvlsllGlPwlvaatvlsitHvnslkves...etsapG.ekpkil....gv 425
                      a+l+tiL++ d++++++i +  e  L+K +g+h+D+++++++++v ++lGlP+  + +++++ H +sl v++   +  ++G +k +++    +v
     CCE27688.1 314 PFAVLLTILFWFDHNVSSLIAQGSEYPLRKPAGFHWDIFLLGITTGVAGILGLPFPNGLIPQAPFHTESLCVTKavkQLDEKGdDKGEFVyeatHV 409
                    *********************************************************************97665111556788666666433338* PP

  HCO3_cotransp 426 rEqRvtgllvfiliglsvl..ltpvlklIPmpVLyGvFLYmgvtsLkgiqlfdRilLllmpakhqp 489
                     EqRv++l+  +l+  ++   l  v++lIP  VL G+F+ mgv +L  + ++ ++  l  ++   p
     CCE27688.1 410 VEQRVSNLAQGLLTLGTMTgpLLVVIHLIPHGVLAGLFFVMGVQALAANGITSKLIFLARDKSLTP 475
                    *********99998877776788899***********************99999888877766666 PP

>> TNFR_16_TM  Tumor necrosis factor receptor member 16 trans-membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.1     0.015        92      10      34 ..     156     181 ..     156     184 .. 0.92
   2 ?   12.2   4.2   2.2e-05      0.13       8      25 ..     218     235 ..     217     237 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.015
  TNFR_16_TM  10 YcSILaaV.vvgLlaYvifKrwksck 34 
                 Y+S +a + +  L++ vi+   +sc+
  CCE27688.1 156 YISFMAWIgIWSLILHVILAVTNSCN 181
                 99****998889*************8 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.2e-05
  TNFR_16_TM   8 PiYcSILaaVvvgLlaYv 25 
                 P+Y SI aa +v+++aY+
  CCE27688.1 218 PFYLSIVAALLVFMVAYI 235
                 9****************9 PP

>> PepSY_TM  PepSY-associated TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2     0.016        95       7      33 ..     121     147 ..     119     153 .. 0.81
   2 ?    6.3   0.2    0.0011       6.6     173     198 ..     162     187 ..     161     192 .. 0.89
   3 ?    0.2   0.1     0.081   4.8e+02       6      34 ..     220     252 ..     219     256 .. 0.63

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.016
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM   7 lGLivglfllvlalTGallvfkpeiea 33 
                 ++ +++  l+++++TG ++vf   + +
  CCE27688.1 121 FAFFAAQPLVIVGVTGPITVFNYTVYD 147
                 57789999*************876655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0011
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM 173 vlGvwllpfllllalTGlvwslaavl 198
                  +G+w+l+++++la+T    +l +v 
  CCE27688.1 162 WIGIWSLILHVILAVTNSCNALRWVT 187
                 69**************9999999885 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.081
                 xxxxxxxxxxxxxxx....xxxxxxxxxxxxxx RF
    PepSY_TM   6 wlGLivglfllvlal....TGallvfkpeieaw 34 
                 +l+++++l+++++a+     G+ ++f+++i  +
  CCE27688.1 220 YLSIVAALLVFMVAYicgeVGTSSLFRHPIRVF 252
                 566666666665554222279999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4418.03
//
Query:       CCE27689.1  [L=1186]
Description: related to TOF1-topoisomerase I interacting factor 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-86  288.5   3.5    6.6e-86  288.0   0.1    2.4  2  TIMELESS    Timeless protein
    1.5e-25   90.4  43.3    6.4e-25   88.3  34.3    3.7  2  TIMELESS_C  Timeless protein C terminal region
     0.0033   16.8   3.0     0.0033   16.8   3.0    3.1  3  BUD22       BUD22
  ------ inclusion threshold ------
      0.012   15.8   1.1      0.036   14.3   1.1    1.9  1  MIEAP       Mitochondria-eating protein


Domain annotation for each model (and alignments):
>> TIMELESS  Timeless protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.0   0.1   1.5e-89   6.6e-86       1     276 []      36     305 ..      36     305 .. 0.95
   2 ?    0.2   0.9     0.079   3.6e+02     148     243 ..     481     575 ..     450     620 .. 0.61

  Alignments for each domain:
  == domain 1  score: 288.0 bits;  conditional E-value: 1.5e-89
    TIMELESS   1 kYklgddclecLkdLkrwlrl.DdddnrrdvaralaeakilqndLipiLiqweek......kkklalaclrLlvaLTwPlelleeeeeteeqtahytql 92 
                 +Y+lgdd+le+L+dLkrw+r  D+++nr+dvar++++ ++++ dL+piL +w e+      ++++alac++L+v+LTwP+e  +e+ +t ++++h++ l
  CCE27689.1  36 QYQLGDDALEVLRDLKRWIRFyDEKTNRMDVARCIHHGNLIEGDLLPILKTWPENamdnkfRSRIALACFELMVPLTWPFERDKER-MTMNHHRHLPVL 133
                 5*****************************************************9987766666******************8888.************ PP

    TIMELESS  93 kkalleyKaailseekgkvlkalvrlllevlakdreerterdegiieliLtLiRNilaiedpqekeksasskkeddilhskliealeesgvldllltla 191
                 + a+++yK+ai++ +++++l+a+vr +l+ +a +  +rt rd+gii+l+L+++RN++ai +p   +    +++e++i++s++i+a++ ++++++lltla
  CCE27689.1 134 ELAQVQYKRAIINFDGARILHAAVRAALPAMALPIGDRTARDQGIIKLVLFFLRNMAAIAPP---SDVKYDGDETQISRSATIDAFSYQDIFHVLLTLA 229
                 **************************************************************...7777777888************************ PP

    TIMELESS 192 ssigkefeqeqfnllllEiiylllkgqdpeeLakesekesrstkeasrasdelskllekekakkkasikknastRHsrFggtlsv 276
                 s++g++f++e  ++ ++Eiiy+l+k+++ ++L+   +++ + +++   +++els++++ke+a+ k+ ++ +++tRH+rFg++++v
  CCE27689.1 230 SNMGEDFRTE--DTAVMEIIYHLVKRVETDKLF---MDDRQLNQV---EASELSAMMSKEAAMLKSHNR-KGPTRHNRFGTMIWV 305
                 ****999998..*********************...666555555...799*****************6.67***********97 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.079
    TIMELESS 148 ilaiedpqekeksasskkeddilhskliealeesgvldllltlassigkefeqeqfnllllEiiylllkgqdpeeLa............kesekesrst 234
                 +l ++d     + + +++ +di  + l + ++e++  d +  +    +++  ++ +     E++++ ++  ++ +              +       ++
  CCE27689.1 481 LLTVQDM----TETGNEDDQDIAENVLSRLFYEESTHDAIAKIIRTYKDQ-GFD-YLDAATELVHHFIRILEAFSKQnvdmqirskkrtR-------RK 566
                 3444444....444444445677777777888888999999998888754.554.33345677777666544322222334433332220.......22 PP

    TIMELESS 235 keasrasde 243
                 k++++++++
  CCE27689.1 567 KKKKNTEKQ 575
                 222222222 PP

>> TIMELESS_C  Timeless protein C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   1.6    0.0053        24     218     297 ..     557     602 ..     484     628 .. 0.66
   2 !   88.3  34.3   1.4e-28   6.4e-25       1     496 [.     650    1172 ..     650    1186 .] 0.69

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0053
                 XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCHHHHHHTTSH CS
  TIMELESS_C 218 lvaekrelleakkkrkkrkpkkdveeegeddfaedpeeeeekPeskpeeeekrqsarqeeesvtikaeelrkqlkseklr 297
                  +++kr ++  kkk+k ++++++   eg d                                + + +eel  ++++ek+ 
  CCE27689.1 557 IRSKKRTRR--KKKKKNTEKQQQSTIEGDD--------------------------------GGLDEEELDDSADDEKTA 602
                 444444444..2222222222222233332................................222222222222222222 PP

  == domain 2  score: 88.3 bits;  conditional E-value: 1.4e-28
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX CS
  TIMELESS_C    1 iLhRiaydlemaalLFqlsllrlFqrilsepkavas......keleelvkqlvrkllkkaevnpklfvELLFsKntsearelesgYekaev.estsk 90  
                  +++R+a++  m ++LF++++++lF+ ++++p+  +       +e+e+lvk+l+r+  kk++ +p l vELLFsK  ++a+ le+gYe ++  +   k
  CCE27689.1  650 YFYRVAFKEHMSVMLFRVDIINLFYNMVKGPESLDRgsssmyREWEDLVKHLLRRCTKKIQERPELLVELLFSKLPATAFFLEYGYERQTAvKNHPK 746 
                  79*******************************999999999**********************************************995133334 PP

                  XX.XXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............................... CS
  TIMELESS_C   91 ra.evwseeeeaelreLylankdv.keedkdvvewilesLadaarereavikklkdlGladkakdiisvKS.......................... 159 
                   a e   +  e   +++ +++ ++  +++ d + w+ ++L +a  +r+a+     +   +d +  ++s+K                           
  CCE27689.1  747 PAaELVFKHTEERDQQIAIVVGALlDNNGADHISWVKQKLSEAESNRRAWSAA--EEAKRDADTVLVSDKEptqeveaanpsaplfnvrrdsieqrt 841 
                  4468888888888899999999998999**********************765..445567777777777777777779999999999999999999 PP

                  ..XXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX CS
  TIMELESS_C  160 Aqsrkakrrlllt..........sdedlelkslyeeerdeddvLekllkeiagkrSkaqvvkkLlqlglvaekrelleakkkrkkrkpkkdveeege 246 
                  A +++a +rll++          sde  e         ++ dv    lk+    + +a+   + ++ g  aek+  ++   ++k+  +  d++   +
  CCE27689.1  842 AVFKNAHLRLLMKlsdmrlmgpaSDETPESVW-----IIPGDVSADTLKDTLHFINQAEFNPPTFEDGSLAEKQLKRKVAPRKKAVFDD-DGDDGAH 932 
                  ************98666666544444433333.....34556666666667777889999999**********9999888877777777.5555555 PP

                  X..XXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXHCHHHHHHTTSHHHHHHHHHHHHHHHHHHTST.TS---EEE---SH CS
  TIMELESS_C  247 d..dfaedpeeeee..........kPeskpeeeekrqsarqeeesvtikaeelrkqlkseklrsalewlqscLiraaeDeEedveadqavpLvplte 331 
                  d  ++ +d+ +               ++k+++ +kr  a   ee+++ +  +++ + + ek   +  +++s L++   D E d e d+       ++
  CCE27689.1  933 DdgFLDDDLLFPAGgptarnvideTQKKKTKNPRKRRKAGDAEEPTDAEL-NEKARKRREKELEKARRIKSALYVRDGDDEFDSEEDE------AFF 1022
                  44578888887765666666777688999999**************9987.7777778888788899*********************......566 PP

                  HHHHHHT-HHHHHHHHHHT-B---TTT-SSEEE-TTS-HHHHHHHHHT-XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TIMELESS_C  332 eqeeameneqfqrvlkaLGlrpPlsgeegfWRiPikLssadLrrrakiLaeeeeeredelkddedgee..adeseeeedllekkarqrKeglasqee 426 
                    e +       +     G+    s                 +r++ +L+++ e+      dd d+ee   de ++e   l +k+ +  +g+   e 
  CCE27689.1 1023 AREREIAARAK-QAAATAGVDTYTSAAKN------------NKRKSTVLSDDSEDD-----DDDDDEEeeEDEADDESTGLTRKRISSSQGMGDGET 1101
                  55555544333.33344466666664444............489999999865432.....222222200233333333333322222222222222 PP

                  X..XXX...XXXXXXXXXXXXX.........................XXXXXXXXX...XX..................... CS
  TIMELESS_C  427 e..kld...eeelkaaPkkkdkdilfeelrakkkrkikl.......gtnseeEeddialdeneedsrassgEledndqdskd 496 
                  e   +d   + el+   k       + ++r        +        ++++ +  d  +d  ++ds +   E+ + +  ++ 
  CCE27689.1 1102 EdmPVDmasDGELRKRIKTGSM---GRDERDS------SanadigmDLDVDMDV-DVDMDV-NMDSAPHEDEEPQAEVVTRR 1172
                  2112222222222222222222...2222221......1233331134444333.334554.66666665555555544555 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   3.0   7.5e-07    0.0033      19     213 ..     414     610 ..     410     655 .. 0.57
   2 ?  -11.3  18.6         4   1.8e+04     231     300 ..     930    1011 ..     759    1027 .. 0.58
   3 ?  -14.0  41.4         4   1.8e+04     138     250 ..     957    1083 ..     947    1173 .. 0.51

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.5e-07
       BUD22  19 erqklvkklKtakkekkskklerleeelealKslDle..qiAekilaskllktkklaeseelpealksikdkkpksnpeekneelektkalenvtsrLl 115
                 e q++++k K+ +  +++ + +++++   +   l+ e   + +++l+++  +tk+  e + +++ l +i    ++++++    ++++++ +env srL+
  CCE27689.1 414 EAQRIGRKVKKSR-GSHEVESADINRFHLVAGVLNQEmfITLNRALHESY-ETKDWTELTSVMRCLTQILLTVQDMTET---GNEDDQDIAENVLSRLF 507
                 7788888887777.555555555554444444443331033344554443.4445555555555555544444444444...556788999******** PP

       BUD22 116 nsktvkevveeivesv......kkllgiek.................kkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsedeekeeseddee 191
                   +  ++++++i+++       +                        +k++ + + ++kk++++kkkkk++e+      +++s+ + d    +   dee
  CCE27689.1 508 YEESTHDAIAKIIRTYkdqgfdY------LdaatelvhhfirileafSKQNVDMQIRSKKRTRRKKKKKNTEK------QQQSTIEGD----DGGLDEE 590
                 **************884433330......13455667788876666644554444444444444444444444......444444444....2333333 PP

       BUD22 192 eeeededdedaeedeedeeaee 213
                 e ++++dde++ e  + +++++
  CCE27689.1 591 ELDDSADDEKTAE--RTSKERK 610
                 3333333333332..2233333 PP

  == domain 2  score: -11.3 bits;  conditional E-value: 4
       BUD22  231 d..................eyneetdeesseesdssdssesasesesessek..kkkkkkkkkkkakakkvtsstfLPsLmgGYisGsed 300 
                  +                   + ++ de+++++ ++  ++++a ++e++++++  +k+ k+++k+ +ka++++s     +L   Y+++++d
  CCE27689.1  930 GahddgfldddllfpaggpTARNVIDETQKKKTKNPRKRRKAGDAEEPTDAElnEKARKRREKELEKARRIKS-----AL---YVRDGDD 1011
                  2455566666666666666555566666666666666666655555555555433333333333333333322.....23...3333333 PP

  == domain 3  score: -14.0 bits;  conditional E-value: 4
       BUD22  138 ekkkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsed........eekeeseddeeeeeededdedaee.....................d 205 
                   + kkk++ ++k++k+ ++++ +++e + e+++k  e+e ++                +d ++e+++e+d   e+                     d
  CCE27689.1  957 TQ-KKKTKNPRKRRKAGDAEEPTDAELN-EKARKRREKELEKArriksalyV------RDGDDEFDSEED---EAffarereiaarakqaaatagvD 1042
                  22.2233333333333333333333333.22222222222222333233331......222222222222...223344444444445544443320 PP

       BUD22  206 eedeeaeerelaqydglla...............sddededeyneetdeesseesdssds 250 
                                                    sdd+++d+ +++++ee+++e+d++++
  CCE27689.1 1043 ------------------TytsaaknnkrkstvlSDDSEDDD-DDDDEEEEEDEADDEST 1083
                  ..................022233344445566633333331.11112222222222222 PP

>> MIEAP  Mitochondria-eating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.1     8e-06     0.036      30     130 ..     531     650 ..     497     657 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8e-06
       MIEAP  30 lrrddelvqkilfilvvlsfrvakealrslkervrkllstssadgsetke......................lssleeavsdylrkeadlydvksivee 106
                 l+ ++elv+++++il ++s++++++++rs+k + rk  ++++++++++ +                      ++++ ++ + ++++  ++++ +++v++
  CCE27689.1 531 LDAATELVHHFIRILEAFSKQNVDMQIRSKKRTRRKKKKKNTEKQQQS-TiegddggldeeelddsaddektAERTSKERKFDFHRFSSRFTPQAVVDT 628
                 44489****************************999999977777774.45899999998888888775555555555555555555555555555555 PP

       MIEAP 107 visellktlkekpslkqekelesY 130
                 ++     +++++   +q k+ ++Y
  CCE27689.1 629 FTTFT--KFYRDLTDEQLKRAHRY 650
                 54443..55555555554655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1612  (0.0899102); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.14u 0.34s 00:00:01.48 Elapsed: 00:00:00.52
# Mc/sec: 6879.59
//
Query:       CCE27690.1  [L=320]
Description: probable 3-hydroxybutyryl-CoA dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-52  178.0   1.2      2e-52  177.7   1.2    1.1  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    2.5e-32  111.3   0.0    4.9e-32  110.4   0.0    1.5  1  3HCDH            3-hydroxyacyl-CoA dehydrogenase, C-terminal 
    0.00014   22.1   0.6      0.001   19.3   0.6    2.2  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    0.00033   20.8   0.2     0.0012   19.1   0.2    1.9  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
     0.0062   15.8   0.0     0.0083   15.4   0.0    1.2  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
  ------ inclusion threshold ------
      0.016   14.8   0.2      0.026   14.1   0.2    1.4  1  DAO              FAD dependent oxidoreductase
      0.048   14.2   0.0       0.14   12.7   0.0    1.8  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
       0.14   11.5   0.2       0.35   10.2   0.1    1.7  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
        1.9    9.2   4.2          9    7.0   3.2    2.5  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   1.2     1e-55     2e-52       2     176 ..      34     216 ..      33     220 .. 0.93

  Alignments for each domain:
  == domain 1  score: 177.7 bits;  conditional E-value: 1e-55
                 EEEE--SCCHHHHHHHHHHT.T-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasa.gleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfae 99 
                 ++viGaG+mG gia v+a++  ++V+l+d+s++al k+l  + k l+k v+k ++++e++++a + ++++t++e+++++d+viEav+E  elK  +f++
  CCE27690.1  34 LGVIGAGQMGLGIALVAAQKaQVPVTLIDTSDKALSKGLTFADKLLAKDVSKSRITQEQADQARSLLRPSTEMEDLASVDFVIEAVPEIPELKSGIFKR 132
                 69****************9889***************************************************************************** PP

                 HHCCS-TTSEEEE--SSS-HHHHCCCSS.SG......GGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EEEE CS
     3HCDH_N 100 lekiakpdailasnTSslsiselaealk.rp......erviglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktpvv 176
                 l++i+++++ila+nTSs+si+++a+a++ +p      +rv+ +HF+nP+p+ k vE++rg +Ts+et++t+ e++k++gk + v
  CCE27690.1 133 LATICPKHTILATNTSSISITQIAAATAaHPtdtsasSRVVATHFMNPVPVQKGVEIIRGLQTSNETLETAIEFCKRLGKITSV 216
                 ************************998533322222267*****************************************8755 PP

>> 3HCDH  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   2.5e-35   4.9e-32       1      97 []     222     318 ..     222     318 .. 1.00

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 2.5e-35
                 TTTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHTTTHGGHH-HHHHHHHHTT--BGGGTBSSSBC CS
       3HCDH   1 GFvvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfelldlvgldvakkilevlaeelgerayapsplleklveagrlgrktgkgfyky 97 
                 GF +nR+l+p++nea+ ++e gv +  +iDa+m++g+++pmGp++l+d +gld++++i++vl+ ++g+++y+ps ll ++v+ag lg+k+gkgfy+y
  CCE27690.1 222 GFLANRILMPYINEAIICLETGVGDRDSIDAIMKNGTNVPMGPLQLADFIGLDTCLSIMKVLHHKTGDSKYRPSVLLGNMVDAGWLGKKSGKGFYDY 318
                 9**********************************************************************************************99 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.6   5.2e-07     0.001       2     101 ..      35     149 ..      34     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.2e-07
                      EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH...TTTCEEEEE--TTTHHHHHHHHHTTS.........SEEEE-SSGG... CS
  Sacchrp_dh_NADP   2 liiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka...lgvrfeaialdaenyeavLaallkeg.........dlvvnlsppi... 80 
                       +iGaG +G ++a + a++ +v   +t++d s++ l + +  a   l +++++  ++ e+ ++   +ll+           d+v+ ++p i   
       CCE27690.1  35 GVIGAGQMGLGIALVAAQKAQV--PVTLIDTSDKALSKGLTFAdklLAKDVSKSRITQEQADQ-ARSLLRPStemedlasvDFVIEAVPEIpel 125
                      69********************..8*****999998887655566755666666666666555.55555555555566778********99988 PP

                      ...GHHHHHHHHHHHT-EEEESS- CS
  Sacchrp_dh_NADP  81 ...ssldvlkaCietgvhyvdtsi 101
                             ++ +C ++ ++  +ts 
       CCE27690.1 126 ksgIFKRLATICPKHTILATNTSS 149
                      777778899999999999999777 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   5.9e-07    0.0012       2     103 ..      34     159 ..      33     168 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.9e-07
                    EEEE--SHHHHHHHHHH.HHTT-EEEEE-SSHHHHHHHHHTT........................EEE-SSHHHHHHHC...SEEEE-SSSHHHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnl.lkagykvavynrtkekveelvaeg........................akaaesieelvasl...dvvitmvkagkav 69 
                    +g+iG G+MG  +al   +ka+  v++++ + +++ + ++                          +++ +++e+    l   d+vi  v++ ++ 
     CCE27690.1  34 LGVIGAGQMGLGIALVAaQKAQVPVTLIDTSDKALSKGLTFAdkllakdvsksritqeqadqarslLRPSTEMED----LasvDFVIEAVPEIPEL 125
                    79************98846999********998877655544556777799977776666665444444444443....1555************* PP

                    HHHHHSHCCC--TT-EEEE-S---HHHHHHHHHH CS
  NAD_binding_2  70 deviegllealkkgdilidgstsspedtrelake 103
                    ++ i++ l+++ +  +++ + tss++ t+  a+ 
     CCE27690.1 126 KSGIFKRLATICPKHTILATNTSSISITQIAAAT 159
                    ******6666667677776667766666655544 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.2e-06    0.0083       4      87 ..      35     144 ..      32     210 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.2e-06
                  EEE--SHHHHHHHHHHHH.HTS-EEEEE.....TTHCHHHCSHHHHCHHHHHHHHHHHHH.........................HHHHCHHHHCCCC CS
                  xxxxxxxxxxxxxxxxxx.xxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxx RF
  Pyr_redox_2   4 vviGgGpAGlaaaltlaq.agakvtlve.....legtclnggcllskallgvaedaeias.........................evvkklnqgiell 70 
                   viG+G  Gl  al +aq a++ vtl++     l + + + + ll+k + +++  +e+a                           ++ +l++gi ++
   CCE27690.1  35 GVIGAGQMGLGIALVAAQkAQVPVTLIDtsdkaLSKGLTFADKLLAKDVSKSRITQEQADqarsllrpstemedlasvdfvieavPEIPELKSGIFKR 132
                  59999999999999999966999999986444433333333334444444444444333377777788888877777777777775566777777777 PP

                  HCCTCEEEEESCEEEEE CS
                  xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  71 lgeevvkidpgkkkvkl 87 
                  l+    +i p++ ++  
   CCE27690.1 133 LA----TICPKH-TILA 144
                  76....444444.4444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   1.3e-05     0.026       4      31 ..      36      66 ..      33     128 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
                EECTSHHHHHHHHHHHHTT...EEEEESSSS CS
         DAO  4 iiGGGiiGlstAyeLarrg...Vtllekgdi 31
                +iG+G +Gl++A+ +a++    Vtl++ +d 
  CCE27690.1 36 VIGAGQMGLGIALVAAQKAqvpVTLIDTSDK 66
                9**************9884588*****9854 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     7e-05      0.14       2      37 ..      34      71 ..      33      91 .. 0.76
   2 ?   -3.1   0.0       6.2   1.2e+04      12      32 ..     200     221 ..     199     235 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7e-05
                EEEECSSHHHHHHHHHHHH.TTSEEEEEESSSSSS.TT CS
   Pyr_redox  2 vvvvGgGyiglElAgalae.lgkkVtvversdkll.rl 37
                + v+G+G  gl  A ++a+  +  Vt+++ sdk l ++
  CCE27690.1 34 LGVIGAGQMGLGIALVAAQkAQVPVTLIDTSDKALsKG 71
                679**************883558**********99543 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.2
                 HHHHHHH.HHTTSEEEEEESSS CS
   Pyr_redox  12 lElAgal.aelgkkVtvversd 32 
                 lE A ++ ++lgk ++v    +
  CCE27690.1 200 LETAIEFcKRLGKITSVSADTP 221
                 5777777344776666655555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00018      0.35      32      71 ..      27      67 ..      13      88 .. 0.82
   2 ?   -1.5   0.0       0.7   1.4e+03      77     119 ..      97     139 ..      70     149 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00018
                  S-GTTSEEEEES-SHHHHHHHHHHH.HTT-EEEEESSSHHH CS
  2-Hacid_dh_C 32 kelsgktvGiiGlGrIGqavakrlk.afgmkviaydrskkk 71
                  +    k +G+iG+G++G  +a +++ + ++ v+ +d+s k+
    CCE27690.1 27 HAADVKSLGVIGAGQMGLGIALVAAqKAQVPVTLIDTSDKA 67
                  5667799**************998769999****9999774 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.7
                   HHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTT CS
  2-Hacid_dh_C  77 elgvelvsleellaesDivslhlpltpetrhlinaeelakmkk 119
                   +  ++  +  e la+ D+v+ ++p  pe +  i ++    ++k
    CCE27690.1  97 RSLLRPSTEMEDLASVDFVIEAVPEIPELKSGIFKRLATICPK 139
                   3333444444556789999999998888777666655555555 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.2    0.0045         9       2      23 ..      34      55 ..      33     133 .. 0.78
   2 ?   -2.3   0.0       3.4   6.8e+03      24      49 ..     138     162 ..     124     174 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0045
                   EEEETTSHHHHHHHHHHHHTTS CS
  F420_oxidored  2 igiiGaGnmgealasgllaaga 23
                   +g+iGaG+mg ++a+ ++++ +
     CCE27690.1 34 LGVIGAGQMGLGIALVAAQKAQ 55
                   79************97666643 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.4
                    -GGCEEEEEESSCCCHHHHHHHHC-E CS
  F420_oxidored  24 qpheivvansrnpekaeelaeelgvk 49 
                    ++h i+ a++ +  +++++a++  + 
     CCE27690.1 138 PKHTIL-ATNTSSISITQIAAATAAH 162
                    556666.6666666666666655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 2031.76
//
Query:       CCE27691.1  [L=367]
Description: uncharacterized protein CPUR_01165 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      133  (0.00741815); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2809.55
//
Query:       CCE27692.1  [L=186]
Description: uncharacterized protein CPUR_01166 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-08   34.4   0.0    2.3e-08   33.8   0.0    1.4  1  Rieske    Rieske [2Fe-2S] domain
      1e-06   28.6   0.0    2.4e-06   27.4   0.0    1.6  2  Rieske_2  Rieske-like [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   2.6e-12   2.3e-08      23      77 ..      79     141 ..      45     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.6e-12
                 TEEEEEEE-TTS-EEEEESC-TTTT-BC........GG.SEEETT.EEE-TTT--EEE.TTSBEE CS
      Rieske  23 geplvvlrdedgevyAlsdvCtHrgapl........se.gkidekgvleCpcHgwayd.adGkvi 77 
                  +++vv++  +g+++A++++C+H   pl        ++ g +     l+Cp Hgw++d  +G + 
  CCE27692.1  79 LNQVVVFQY-RGKFHAVDHRCPHSAYPLsngmpfdiEDfGVT-LSAGLTCPKHGWSFDlFTGMAD 141
                 456899995.******************66666654333444.4559***********8777655 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.27   2.4e+03       2      48 ..      13      60 ..      12      74 .. 0.64
   2 !   27.4   0.0   2.7e-10   2.4e-06      24      98 ..      80     156 ..      61     160 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.27
                EEEEEECCCS-T.TB-EEEEETTEEEEEEE-TTS-EEEEESS-TTTSS CS
    Rieske_2  2 wvpvckledlvk.etgvaalvdgkqvalfrlekeevyAidnldpasea 48
                wv+  + + ++  ++ v  l++ +q   ++    +++ + + dp   +
  CCE27692.1 13 WVSAGSASTFPDlGEDVGNLIETRQCNALMRPGCKIFHVPKDDPSLAK 60
                555555555554134477777888876666667788888888886544 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 2.7e-10
                 EEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEE.....EE-TTT--EEETTT-BBSS-TTSB-BEE-EEEST CS
    Rieske_2  24 kqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelv.....vasPlykqkfdLktGecledeevslkvypvrved 98 
                 +qv++f++ +++ +A+d ++p  +a++ls+G+  d ++  v     +++P ++  fdL tG   ++ +++l+v++v+++d
  CCE27692.1  80 NQVVVFQY-RGKFHAVDHRCPH-SAYPLSNGMPFDIEDFGVtlsagLTCPKHGWSFDLFTGM-ADTGRYKLPVWEVQLRD 156
                 59****99.9************.5*******96666543331223379*************5.7999**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1324.19
//
Query:       CCE27693.1  [L=318]
Description: uncharacterized protein CPUR_01167 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-65  220.7   0.1    3.8e-65  220.0   0.1    1.3  1  Rox3      Rox3 mediator complex subunit


Domain annotation for each model (and alignments):
>> Rox3  Rox3 mediator complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.0   0.1   2.1e-69   3.8e-65       3     205 .]      80     295 ..      78     295 .. 0.93

  Alignments for each domain:
  == domain 1  score: 220.0 bits;  conditional E-value: 2.1e-69
        Rox3   3 rPnpsedLielYgLteiaaeVARtdpvtGeKinkLRKsYkgkikklglsGkfkavkkkeegkegellellklpdeeWqnqkvkgkeiekglsadvlskl 101
                  P+++edL+e++gL +iaaeVAR++p +GeK n+LRK+Ykg+ik+lg++G+f+++kk+e +++ e+l+++++pd eW+ q+vkg+++++gls+++ls++
  CCE27693.1  80 LPRLTEDLFEVFGLVDIAAEVAREKP-NGEK-NALRKTYKGQIKRLGVAGHFDVQKKRE-NDPAEFLAMVRTPDLEWDVQHVKGRKVSDGLSESTLSSI 175
                 79************************.9***.***********************6666.88************************************* PP

        Rox3 102 ekalkmakGeipkkewdasvLgldkdsklksakaastkkaqsaratapstplaaa...............eaarpkrkgkKRsYgdssFeGYgegfeDd 185
                 ++a+++a+G++pk+ wd+svLg d ++ +++a   +++k ++++++ +stp+aa+               +++rp+r+ kKRsYgdss+eGYgeg +D+
  CCE27693.1 176 RRATNLARGPVPKSVWDVSVLG-DLSAYRANALRMNAAKPPESNTSLSSTPAAATpsamgrpkprvppghDPNRPRRNIKKRSYGDSSYEGYGEGLPDE 273
                 **********************.7777777766666566666888888888888889999*************************************** PP

        Rox3 186 d.....gyStgdgddrgegkkrrkk 205
                 d     gyS ++g++     krrkk
  CCE27693.1 274 DvdmdaGYSIAEGQG---TLKRRKK 295
                 9************74...7899997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2466.32
//
Query:       CCE27694.1  [L=933]
Description: related to transcriptional activator Mut3p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-25   88.3   0.0    8.9e-25   87.2   0.0    1.6  1  Fungal_trans  Fungal specific transcription factor domain
    5.1e-10   39.3  11.9    9.7e-10   38.4  11.9    1.5  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0     1e-28   8.9e-25       2     266 ..     326     569 ..     325     570 .. 0.81

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 1e-28
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayasplll....lailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwil 94 
                   + +f+nf++ +p++h+p+f++        + +y+++  l    +a l  +   ++     sn    +e  + + +   a++++ ++++  +++l ++
    CCE27694.1 326 QDYFENFNCMLPLFHQPTFMHLV------ERQYSPDPYLgsgwWASLNCAIAIAHRLRVMSNLVPQEEDEKAWDYLKNAMAVF-PELTMRNTDLLSV 415
                   67*********************......777777777767764444444444444444444444444436777777777777.************* PP

  Fungal_trans  95 qsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcdddd 191
                   q+Ll ++l+ +++ +   + +++  a+rl++s+gLhr+    +      l + e+e+rrR++w a++lDk ++l  Grp   dd+++n++LP+ d  
    CCE27694.1 416 QALLGMALFMQGTPNPQPASLLIAAAIRLCHSIGLHRRGTGFN------LNPIEIEQRRRVFWIAYMLDKDLCLRSGRPAAQDDDDMNVELPEADP- 505
                   *****************************************99......88888**************************99*************9. PP

  Fungal_trans 192 lwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnWr 266
                    ++  +    + ++         ++ +  +  +  i s ++++l+s   + q        l+ + el+ +l+ W+
    CCE27694.1 506 ADNIGNIPLADGKG--------KMNLFRVMCEFTVIESRVYKKLYSTQATKQSDGDL---LNTISELDQQLEDWK 569
                   77777777777777........46667777777778888888777766666555555...889999999999997 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4  11.9   1.1e-13   9.7e-10       1      40 []      67     106 ..      67     106 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.1e-13
                 SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCEE CS
     Zn_clus   1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskrs 40 
                 +aCd CrkkK+KCd+k P+C++C+ + ++C+f +  +krs
  CCE27694.1  67 KACDMCRKKKIKCDGKLPSCTHCVNYKTDCVFTHVEKKRS 106
                 59*****************************999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.41
# Mc/sec: 6838.11
//
Query:       CCE27695.1  [L=689]
Description: uncharacterized protein CPUR_01169 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.34s 00:00:01.29 Elapsed: 00:00:00.52
# Mc/sec: 3955.93
//
Query:       CCE27696.1  [L=785]
Description: uncharacterized protein CPUR_01170 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-06   27.3   0.2    2.3e-05   24.2   0.1    2.3  2  PGAP1          PGAP1-like protein
    3.9e-05   23.3   0.0    6.9e-05   22.5   0.0    1.4  1  DUF676         Putative serine esterase (DUF676)
    0.00022   21.9   0.3    0.00022   21.9   0.3    2.2  2  Abhydrolase_6  Alpha/beta hydrolase family
      0.003   16.8   0.0     0.0058   15.9   0.0    1.4  1  Hydrolase_4    Serine aminopeptidase, S33
      0.005   16.1   0.0      0.011   15.0   0.0    1.4  1  LCAT           Lecithin:cholesterol acyltransferase
  ------ inclusion threshold ------
      0.031   13.9   0.0      0.074   12.6   0.0    1.6  1  DUF2974        Protein of unknown function (DUF2974)
      0.044   13.4   0.0       0.13   11.9   0.0    1.8  2  Abhydrolase_1  alpha/beta hydrolase fold
      0.098   12.5   0.0       0.18   11.6   0.0    1.4  1  Lipase_3       Lipase (class 3)
       0.11   11.3  61.9       0.16   10.7  61.9    1.2  1  Caldesmon      Caldesmon
       0.12   12.2   0.0       0.27   11.0   0.0    1.5  1  Abhydrolase_3  alpha/beta hydrolase fold
       0.15   11.5   0.0        0.3   10.6   0.0    1.4  1  LIDHydrolase   Lipid-droplet associated hydrolase
        1.2    9.2   0.0        1.2    9.2   0.0    2.4  1  Thioesterase   Thioesterase domain


Domain annotation for each model (and alignments):
>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.38   5.7e+02       7      27 ..      67      87 ..      64     113 .. 0.81
   2 !   24.2   0.1   1.6e-08   2.3e-05      84     129 ..     127     179 ..     101     193 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.38
       PGAP1  7 VlFvpGnagsykqvrslAsea 27
                V++++G  g+ +  rs+ + +
  CCE27696.1 67 VVYIHGFYGNDQSFRSFPAHV 87
                99***************8877 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.6e-08
       PGAP1  84 sssekeptsviliGHSmGGivaraaltlkn.......yikqsvntiltlasPh 129
                 + +e + t+vil+GHSmGG++a  ++ + n       + k+ +  i+ +++P+
  CCE27696.1 127 EPHESPSTDVILVGHSMGGLLAADVVLMSNrsssrpqLLKHRILGIIAMDAPL 179
                 5678999***************9999988877777777777888888888886 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.6e-08   6.9e-05       7     129 ..      66     182 ..      60     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.6e-08
      DUF676   7 LvVlvHGlqgnsaDlelikeqlekikeklpeekieflmsennesktfkgidvlgerlaeevlevvkkkkdknkkiSfvghSlGgliaraaiaklkekem 105
                 LvV +HG+ gn + +++  +++++  + l     ++ ++   + kt+k i++ +++   ++  +   + d      +vghS+Ggl a  ++   + +  
  CCE27696.1  66 LVVYIHGFYGNDQSFRSFPAHVHARLKILLSSSHIIHSKIYPRYKTYKPIEIARDKFSAWLEPHESPSTDV----ILVGHSMGGLLAADVVLMSNRSS- 159
                 9*********************99766677778888899999******************98876666666....59************999555544. PP

      DUF676 106 tlkeaikglepvtfitlasPhLGv 129
                  ++  + + ++   i++  P+LG+
  CCE27696.1 160 SRP-QLLKHRILGIIAMDAPLLGL 182
                 445.5666799999********97 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.3   1.5e-07   0.00022      56     121 ..     125     211 ..      67     281 .. 0.58
   2 ?   -1.5   0.1       2.1   3.1e+03     103     176 ..     508     531 ..     403     564 .. 0.50

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.5e-07
                    HHCCTT..TTSEEEEEETCHHHHHHHHHHCC.................EE.EEES-..........----TTTS----TTHHHHHHTT-C CS
  Abhydrolase_6  56 lldelaagggpvvlvGHSlGGalalaaapla...............lvvg.vlldppp........talpagllaaalelllallallrl 121
                     l+   +   +v+lvGHS+GG+la+    +                ++ g +++d+p         +++ a+l+++ +++ ++  +++++
     CCE27696.1 125 WLEPHESPSTDVILVGHSMGGLLAAD---VVlmsnrsssrpqllkhRILGiIAMDAPLlglhpgivMSGLASLFQPSPKVDAQQESPEAS 211
                    333333367899*************9...4444478899999998866678999996643332233222222222222222232223333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.1
                    TTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEE CS
  Abhydrolase_6 103 gllaaalelllallallrllawlsreplprlfladedadaawrarlarlaallaglgllpaaawadlpvpllvl 176
                    +                                                 a+++++  l ++a+   p+p  +l
     CCE27696.1 508 P-------------------------------------------------ATQNPPPNLDLPAISEPPEPP-IL 531
                    1.................................................111111111122444444444.33 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.9e-06    0.0058      72      99 ..     130     157 ..     120     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.9e-06
  Hydrolase_4  72 ehpelplfllGhSmGGliallyllrypd 99 
                  e+p + ++l+GhSmGGl+a+ ++l+  +
   CCE27696.1 130 ESPSTDVILVGHSMGGLLAADVVLMSNR 157
                  67889****************9965444 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.2e-06     0.011     116     164 ..     129     181 ..     122     189 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.2e-06
        LCAT 116 lklsgkkvvliaHSmGnllvlyflk.wveaea...WvdqhikafislgapllG 164
                 +++    v+l++HSmG+ll     + ++++      + + i ++i++ apllG
  CCE27696.1 129 HESPSTDVILVGHSMGGLLAADVVLmSNRSSSrpqLLKHRILGIIAMDAPLLG 181
                 5566788***********999875514454447889999*************9 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     5e-05     0.074      83     122 ..     133     178 ..     112     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5e-05
     DUF2974  83 egkiylgGhSkGGnlAvyaamnaeddlq......eriskiysfDgp 122
                 + +++l+GhS GG lA+ ++++ +++ +      +ri  i+ +D+p
  CCE27696.1 133 STDVILVGHSMGGLLAADVVLMSNRSSSrpqllkHRILGIIAMDAP 178
                 3469************988877555444466666***********9 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         3   4.5e+03       3      18 ..      67      82 ..      66      90 .. 0.77
   2 ?   11.9   0.0   8.5e-05      0.13      73     112 ..     134     187 ..     124     287 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3
                   EEEE-STTTCGGGGTT CS
  Abhydrolase_1  3 lvilhGlpgssdvwae 18
                   +v++hG+ g+  +++ 
     CCE27696.1 67 VVYIHGFYGNDQSFRS 82
                   89*******7665554 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 8.5e-05
                    SSEEEEEETHHHHHHHHHHHHH..........GGGEEEEEEESE....CSSCCH CS
  Abhydrolase_1  73 dkltlvGhSmGGmialayaaey..........perVkalvllga....idpaas 112
                      ++lvGhSmGG++a+ + ++           ++r+ ++++++a    ++p + 
     CCE27696.1 134 TDVILVGHSMGGLLAADVVLMSnrsssrpqllKHRILGIIAMDApllgLHPGIV 187
                    5689**************999999999999999999999999997777555443 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012      0.18      51      80 ..     118     149 ..      68     181 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHTT..-EEEEEEEETHHHHHHH CS
    Lipase_3  51 vlkelkrllekyp..eysivvtGHSLGgalAl 80 
                  +++++ +le ++  ++ ++++GHS+Gg lA+
  CCE27696.1 118 ARDKFSAWLEPHEspSTDVILVGHSMGGLLAA 149
                 45666777776664489***********8874 PP

>> Caldesmon  Caldesmon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  61.9   0.00011      0.16      38     201 ..     540     713 ..     531     743 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
   Caldesmon  38 tnshrsevteeaselkssgeegddedqalldrlakreerrqrrlkea.lerqkeldaeaaease............erslaeekeeaeeeekssrrker 123
                 ++++r+ + e ++  k + ++ +d+++a+++r + ++++ ++ lkea ++rq e++ + + ++e            +  + ++k  +e +++++++ker
  CCE27696.1 540 KDAKRQAEREAKRLQKAYDQAIKDRNKAIQERERLLQKKCKKALKEAeKKRQSEQKEKLRREKEekmcvvapvdgpS--HGVSKVGEEAKKETEKEKER 636
                 34444455566666677788888888888888888888888888886566666665555544443556554433331..33333333333333333333 PP

   Caldesmon 124 yrdeeeeeeete....ekekereekkqaeskeeeeeekaeaeeeaeeeeeekkvdesedkevseelkdeeskqvleekkaie 201
                 + ++ ee+ee e    ek+k+++e k++++ke+e e+k+ +e e++ee+ee++  e+e+++++ee+k+e+     e++k+ e
  CCE27696.1 637 ETKKAEEREEREereeEKTKKKKEVKKETEKEKERETKKAEEREKREEREEREEREEEKTKKKEEVKKET-----EREKKKE 713
                 3333333333330000333333333333333333333333333333333333333334444444444442.....2222111 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018      0.27      68      98 ..     131     162 ..     103     216 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                    ETTCEEEEEEETHHHHHHHHHHHHHHHTT.-- CS
  Abhydrolase_3  68 adpsrivlaGdSaGGnlaaavalrardeg.ep 98 
                       + ++l+G S GG laa v+l+  +++ +p
     CCE27696.1 131 SPSTDVILVGHSMGGLLAADVVLMSNRSSsRP 162
                    34569*****************9988774233 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0002       0.3      59     104 ..     109     153 ..      64     184 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
  LIDHydrolase  59 fsLedQiehkedflkellekaksekdvklilvGHSvGaYialevlk 104
                   ++  + ie ++d++ + le  +++  +++ilvGHS G  +a  v+ 
    CCE27696.1 109 YKTYKPIEIARDKFSAWLE-PHESPSTDVILVGHSMGGLLAADVVL 153
                   5555668999999999999.568999***************99986 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00079       1.2      64      83 ..     132     151 ..     120     180 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00079
                   SSSSEEEEEETHHHHHHHHH CS
  Thioesterase  64 pegPyalfGhSlGgllAfev 83 
                   p   + l+GhS+GgllA +v
    CCE27696.1 132 PSTDVILVGHSMGGLLAADV 151
                   555789***********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3464  (0.193207); expected 358.6 (0.02)
Passed bias filter:                     1078  (0.0601261); expected 358.6 (0.02)
Passed Vit filter:                       595  (0.0331865); expected 17.9 (0.001)
Passed Fwd filter:                       207  (0.0115455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 2.62u 0.41s 00:00:03.03 Elapsed: 00:00:00.63
# Mc/sec: 3781.82
//
Query:       CCE27697.1  [L=911]
Description: related to tol protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-15   57.0   0.0    4.8e-15   56.2   0.0    1.5  1  HET       Heterokaryon incompatibility protein (HET)


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   2.7e-19   4.8e-15       1     146 []     317     470 ..     317     470 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 2.7e-19
         HET   1 YeaLSYvWgdsk.................ekeeievng..........klleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYs 72 
                 Y aLSY W ++                  +                   +  +++ + da+  + + g rylWiD+ C + +  + +++q+  m+dIYs
  CCE27697.1 317 YLALSYAWAQTGldasaeaeadadapsmfD-------LsalrlgpdgiLPDTMPALFADAIAFTITIGARYLWIDRFCLQIT-PAARRQQIDVMDDIYS 407
                 99******9988776666666665444442.......044556667788899**************************9888.89************** PP

         HET  73 nAelvivalgsesedsgllalealralkkekleekeielkksaekkkellekeeraieellespwfkRvWvlQE 146
                 +A+l++v++ ++   sg ++l+++r+++ +   + +i           + ++  r   e+++++w +R+W+lQE
  CCE27697.1 408 RASLTLVVATEDAILSGIPGLSSPRETQLSLRVN-NIL----------YTTSLIRPDLEVASTKWASRAWTLQE 470
                 **********999888888888887655444333.333..........35678899999**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 6531.09
//
Query:       CCE27698.1  [L=561]
Description: uncharacterized protein CPUR_01172 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-14   51.1   0.0    7.1e-06   24.9   0.0    2.2  2  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   3.9e-10   7.1e-06      26     115 ..     135     222 ..     123     276 .. 0.77
   2 !   23.9   0.1   7.9e-10   1.4e-05     179     376 ..     300     541 ..     297     542 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 3.9e-10
                  HHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHT.T-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCC.HHHHHHHHS CS
  AMP-binding  26 reldervnrlAagLrslGvkkgdrVaillpnspewvvallailka.Gavvvplnptltaeelayiledseakvliatvdsel.leklleaaa 115
                  ++ ++++n ++++L+    +   +Vai+lpns+e++++l+a+  + ++++v l  + t++el  il+ s + +++ t +     +++ +a +
   CCE27698.1 135 ADINRQINIIGRYLEG---QGSIKVAIYLPNSIELLITLFACSFYpNLTTVILPFNVTEPELINILRRSAVDTVV-TASGSFpFDSVVKAYS 222
                  5678888888889976...44557******************8773667777777********************.4444444555544443 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 7.9e-10
                  EEHHHHHHHHHHHH..HHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHH....... CS
  AMP-binding 179 lshrnlvanvaslk..letrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleal....... 267
                   s++nl+++v+s+   ++ r++l+++d +l + pl+ i  l + +l+al+s a+v l +   +  ++ l+ + +  ++tv+++ P++l +        
   CCE27698.1 300 FSQANLASAVSSQLvaIPSRERLTQTDLFLPVDPLSNIHTL-TLTLAALFSNASVALNSVAGQ--SADLALATQGVSPTVVVASPAALLRSheesirk 394
                  6889999999986686777788999***************8.99*************776655..4567889999************99995555444 PP

                  .......HHCCCHHCHHHHC...............................CGTT.-SEEEE...ESS-...EBHHHHHHHHHHHTCEEEEEEEEGGG CS
  AMP-binding 268 .......lesgalkaakkak...............................dlss.lrlvll...ggep...lspellrffralfgeevlegYGlTEt 320
                         l          ++                                 ++ lrlv++    g+    ls ++l  +r l g ++  +Y l+ +
   CCE27698.1 395 lssglakL----------SHtlstktltqrgvhaasnalsgfaagarlrvgTTPGkLRLVYTaerIGAHtplLSCQVLSDLRVLSGARI--IYALSAA 480
                  33332220..........11333334444455555555555555555555533344777664344333311245577777777777643..4444444 PP

                  SSECEE......CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-S CS
  AMP-binding 321 tgvvtv......lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmk 376
                   ++ +v      ++ + +  +  + G p   ve++++D    +   d +eGe+ vrgp+v  
   CCE27698.1 481 RVAGSVtqtavfDY-RVSADVETHFGAPTTSVEIYLKDLGSHKTTDDVVEGEIIVRGPCVSG 541
                  44442223467544.4444566789**************99999989999********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 4227.09
//
Query:       CCE27699.1  [L=1652]
Description: related to ECM32-DNA dependent ATPase/DNA helicase B [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-29  101.7   0.0    7.7e-29  100.7   0.0    1.5  1  AAA_12     AAA domain
    5.4e-22   78.8   0.3    5.4e-22   78.8   0.3    2.5  3  AAA_11     AAA domain
    1.3e-09   38.6   0.1    1.3e-08   35.3   0.0    2.6  2  AAA_19     AAA domain
    8.3e-06   25.7   0.0     0.0012   18.6   0.0    2.6  2  AAA_30     AAA domain
    0.00014   21.6   5.1     0.0003   20.5   5.1    1.6  1  zf-CCCH_4  CCCH-type zinc finger
    0.00033   20.5   5.5    0.00094   19.0   5.5    1.8  1  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
     0.0041   17.1   0.0     0.0097   15.9   0.0    1.5  1  ResIII     Type III restriction enzyme, res subunit
     0.0044   17.0   8.2       0.01   15.8   8.2    1.7  1  zf_CCCH_4  Zinc finger domain
  ------ inclusion threshold ------
      0.034   13.4   1.1      0.036   13.3   0.0    1.5  2  DUF2075    Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   3.8e-32   7.7e-29       1     176 [.     973    1184 ..     973    1186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 3.8e-32
      AAA_12    1 lerSlferllkke.....kekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekke...ksyiNe 89  
                  l++Slferl++       + ++++L+tq Rmhp+I+ + ++++Y  +Lk+a++v+ +++      +   ++l++++ e+ e   + ++   +s +N+
  CCE27699.1  973 LDTSLFERLVQPLydtdaRVPYSTLETQRRMHPSIAALIRSTLYP-SLKNADNVSCYPEV-----KGIRKRLFWMQHEHLEAGVSAHDplnTSHSND 1063
                  589*******9888999999************************8.69******999988.....67777788998888777777666788****** PP

      AAA_12   90 eEaelvvklvekllkkgseeerkkigvitpYraqvellkkklke...............keeekseke...........................ie 144 
                   E+e+ + lv++l+++g+ + + +i+v+tpY  q++ l++++++               +                                   i+
  CCE27699.1 1064 FEVEMTTALVSHLIRQGEYQ-NGQIAVLTPYLGQLHKLRRRMASifeicindrdnedleA-------MdaeldtgdslsnaanaaniskssllktIR 1152
                  *******************9.8*********************96666665555555540.......0555555556666666667777788888** PP

      AAA_12  145 vntvdgfQGrekdviilslVRsnekkeigflk 176 
                  v+tvd+fQG+e +v+++slVRsn++++ gfl+
  CCE27699.1 1153 VATVDNFQGEEAEVVVISLVRSNPQRKCGFLS 1184
                  ******************************97 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.8   3.5e+03      80     161 ..     372     488 ..     359     531 .. 0.53
   2 !   78.8   0.3   2.7e-25   5.4e-22       2     258 ..     636     956 ..     635     958 .. 0.80
   3 ?   -3.4   0.3       3.2   6.4e+03     150     187 ..    1359    1396 ..    1296    1423 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.8
      AAA_11  80 dsegekykpkivRvgneeeriseavksvsleekvekrlekee.................kaqlakeiskeleklakelrafeeeeek............ 149
                 +++   +  ++vR ++e+   ++  +++++++ v+    +++                 + q+  +++k ++k++++  ++++  +             
  CCE27699.1 372 REDTIGQLRDTVRHVQEQ-LHQSPDQRLTTKHNVRTYTYEHPtpinvmfgrdgglellvQCQQLATVQKLSAKERTTWWQQSRRLQAgallclvdatgs 469
                 455555566666766666.45555566666666666666655677777777777666554445555555555544444333333333666666665555 PP

      AAA_11 150 .......eklkkskeksks 161
                        +++ +sk ++++
  CCE27699.1 470 vaffvvsQSTMRSKADERK 488
                 5444444222222222222 PP

  == domain 2  score: 78.8 bits;  conditional E-value: 2.7e-25
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeeri 100
                 l++sq  a+ ++ls++  +l+qGPPGtgK+ t  ++++ ll+    +++k++   iL    +N A D+lle ll+        k   k++R+g+ ++  
  CCE27699.1 636 LDESQSMAVLNTLSREI-SLVQGPPGTGKSYTGEKIIQILLQ----NKTKAKLGPILCVCYTNHALDQLLEHLLD--------KGIEKVMRIGSRSK-- 719
                 799*************6.**************9999999955....45688888999999***************........88899********4.. PP

      AAA_11 101 seavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeek.................................................. 149
                 se++ s+ l ++v+   + ++    ++ei  ++ ++++  +++ +  ++                                                  
  CCE27699.1 720 SERMVSLNLTNIVQGFDKTKS---ESHEIGHAIGEIKRVCQDTVSSLRElavsqstatvkdhlqsfhpwhfielfppvdedgwitvsnqkpssaienwl 815
                 888888888888887665543...333333333333333333333333333345666667777778888888999999999999999999999999999 PP

      AAA_11 150 ................................eklkkskekskskleqerrklkkerkelskeleeaeesleeevldeaeivltTlsgags..kllekl 214
                                                    k   ++ +s    ++  l+ke +el ++ +++ + ++  +l++a+++  T +g ++  + l++l
  CCE27699.1 816 ksghedlfkyrpvedlkncntnlwemssfernILFKHWLQEIRSPIISTLLSLQKEYQELCERRNKIGSDVKLRCLQSADVIGVTTTGLARniSILRRL 914
                 999999999999999999999999999887642334445667788888888999999999999999999999**********99999997722456666 PP

      AAA_11 215 akkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpatv 258
                   + +v++  EA+  +E+ +l +l+   ++++L+GD+ QL++ +
  CCE27699.1 915 --RSKVMVCEEAGEVLEAHVLTALLPSLEQAILIGDHLQLRPQI 956
                 ..99*************************************966 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.2
      AAA_11  150 eklkkskekskskleqerrklkkerkelskeleeaees 187 
                    l + ++++++k+  ++  l+k  +++ ke++++e+ 
  CCE27699.1 1359 SYLGYLDRETRNKRYGKLMRLWKDMDRFVKEVQKEEQP 1396
                  44444444444444455555555555544444444443 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   6.5e-12   1.3e-08       1     141 [.     640     952 ..     640     957 .. 0.70
   2 ?   -1.3   0.0       1.2   2.5e+03      28     112 ..    1070    1160 ..    1067    1181 .. 0.55

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 6.5e-12
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelgg.vkpeeillvaftgrAakelrerlaalgaeatTiHrlal.................... 77 
                 q  av  +l++++ lv ++pGtGK+++ ++i+++l+++++  k+ +il+v++t++A ++l e l  l++ ++ + r++                     
  CCE27699.1 640 QSMAVLnTLSREISLVQGPPGTGKSYTGEKIIQILLQNKTkAKLGPILCVCYTNHALDQLLEHL--LDKGIEKVMRIGSrsksermvslnltnivqgfd 736
                 667884499*************************99987515679******************9..555555555554455555555555555555555 PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  CCE27699.1 737 ktksesheighaigeikrvcqdtvsslrelavsqstatvkdhlqsfhpwhfielfppvdedgwitvsnqkpssaienwlksghedlfkyrpvedlkncn 835
                 555566666666666777777777777777778888888888888888888888888888888888888888888888888888888888888888888 PP

      AAA_19  78 ...............................................................ldfddlltealelleeaeeekklqeeellivDEfqd 113
                                                                                +++++l         + +  + l + ++++  E+ +
  CCE27699.1 836 tnlwemssfernilfkhwlqeirspiistllslqkeyqelcerrnkigsdvklrclqsadvigVTTTGLA-R------NISILRRL-RSKVMVCEEAGE 926
                 8888888888888888888888888888888888888888777777777766666444333222222222.1......33333345.555777777776 PP

      AAA_19 114 vdelqyrLlkallgekkklllvGDpdQl 141
                 v  l+ ++l all++ ++ +l+GD+ Ql
  CCE27699.1 927 V--LEAHVLTALLPSLEQAILIGDHLQL 952
                 6..5567777777666778888888776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
      AAA_19   28 khivallvelggvkpeeillvaftgrAakelrerlaalgae.........atTiHrlalldfddlltealelleeaeeekklqeee.llivDEfq 112 
                  ++ v++l+++g+ +  +i+++++     ++lr r+a++ +           + + +   ld+ d l++a+++  + ++++ l ++  +  vD fq
  CCE27699.1 1070 TALVSHLIRQGEYQNGQIAVLTPYLGQLHKLRRRMASIFEIcindrdnedLEAMDAE--LDTGDSLSNAANAA-NISKSSLL-KTIrVATVDNFQ 1160
                  667888888888888889998888777777777775444334444443332222211..44444444444441.22333333.443366666665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.1e-07    0.0012       2      64 ..     636     701 ..     635     732 .. 0.84
   2 ?    4.1   0.0     0.017        33      86     130 ..     913     954 ..     880     956 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.1e-07
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaag.....grviglAptgkaAkvLae 64 
                 l+++Q+ av ++l+ +  +++++Gp+GtGK+++ +++ +++ +++     g+++ +  t+ a ++L e
  CCE27699.1 636 LDESQSMAVLNTLSRE--ISLVQGPPGTGKSYTGEKIIQILLQNKtkaklGPILCVCYTNHALDQLLE 701
                 7899*****9988877..9******************9998888657888888888888888887765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.017
      AAA_30  86 lepgtllivDEagmv.dtkqlaallkaaekagakvilvGDerQlas 130
                   ++++++  Eag v  ++ l+all ++e+     il+GD+ Ql +
  CCE27699.1 913 RLRSKVMVCEEAGEVlEAHVLTALLPSLEQ----AILIGDHLQLRP 954
                 345699*******88799999999999999....9********975 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   5.1   1.5e-07    0.0003       3      22 .]      20      40 ..      18      40 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.5e-07
   zf-CCCH_4  3 Cpyfa.kGsCrfGdnCrFsHd 22
                C+++a  G+C+fG++C +sH+
  CCE27699.1 20 CWEYArSGNCKFGNRCHYSHE 40
                *****889************6 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   5.5   4.7e-07   0.00094       6      25 ..      20      39 ..      16      40 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.7e-07
                BCHHHHHS--TTGGG-SSBS CS
     zf-CCCH  6 CrffmrtGyCkyGdrCkFaH 25
                C  ++r+G Ck+G+rC+++H
  CCE27699.1 20 CWEYARSGNCKFGNRCHYSH 39
                778***************** PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.9e-06    0.0097       6     114 ..     638     755 ..     626     778 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.9e-06
                 HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   6 eyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee...kflflvprkslleqtleefkkflseaykeigkkvsgdkkka..... 96 
                 e Q  a+ n+l       ++  l++ + GtGK+++  k+i+ ll+++ +     +l ++ +++ l+q+le++ +   e++++ig   ++++  +     
  CCE27699.1 638 ESQSMAVLNTL------SREISLVQGPPGTGKSYTGEKIIQILLQNKTKAklgPILCVCYTNHALDQLLEHLLDKGIEKVMRIGSRSKSERMVSlnltn 730
                 56666666665......466789********************99977778999*****************9888888888755554444444444444 PP

                 ..............-SEEEEEHHHH CS
      ResIII  97 .......kekdstnkkilvttiqsl 114
                        ++++s+++   + +i+++
  CCE27699.1 731 ivqgfdkTKSESHEIGHAIGEIKRV 755
                 4445544456666666666666555 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   8.2   5.2e-06      0.01       1      19 []      20      39 ..      20      39 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.2e-06
   zf_CCCH_4  1 Ckfflq.GtCkkGdkCrFaH 19
                C  +++ G+Ck+G++C+++H
  CCE27699.1 20 CWEYARsGNCKFGNRCHYSH 39
                888***************** PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.8e-05     0.036       2      56 ..     651     714 ..     650     748 .. 0.69
   2 ?   -4.3   0.2       3.9   7.8e+03     139     170 ..    1388    1419 ..    1378    1425 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
     DUF2075   2 avvlVtGvaGtGKtvvllnllael....eddeeertavylsvNhplvlvlrealakke.....e 56 
                 ++ lV+G +GtGK++ + +++  l    ++ +++    + + Nh+l + l++ l+k        
  CCE27699.1 651 EISLVQGPPGTGKSYTGEKIIQILlqnkTKAKLGPILCVCYTNHALDQLLEHLLDKGIekvmrI 714
                 6789*************9999988875555566666777899********99998887533331 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 3.9
     DUF2075  139 geigteee.lkklakkleveleekvhLksqfRv 170 
                  +e+++ee+ ++++a+ ++++++++ + ++qfR 
  CCE27699.1 1388 KEVQKEEQpFQRVADLVRHTNRQR-KTQKQFRF 1419
                  455555556777777777777777.77777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      777  (0.0433376); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.49
# Mc/sec: 10198.39
//
Query:       CCE27700.1  [L=46]
Description: uncharacterized protein CPUR_01174 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       143  (0.0079759); expected 358.6 (0.02)
Passed bias filter:                      138  (0.00769703); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 350.83
//
Query:       CCE27701.1  [L=56]
Description: uncharacterized protein CPUR_01175 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       194  (0.0108205); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 470.66
//
Query:       CCE27702.1  [L=52]
Description: uncharacterized protein CPUR_01176 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       166  (0.00925874); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 407.19
//
Query:       CCE27703.1  [L=96]
Description: uncharacterized protein CPUR_01177 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 772.78
//
Query:       CCE27704.1  [L=223]
Description: uncharacterized protein CPUR_01178 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.08   13.1   0.2       0.27   11.4   0.1    1.8  2  HEPN      HEPN domain


Domain annotation for each model (and alignments):
>> HEPN  HEPN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.19   3.3e+03      77     105 ..     110     143 ..     102     144 .. 0.77
   2 ?   11.4   0.1   1.5e-05      0.27       5      35 ..     176     206 ..     174     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.19
                 HHHHHCCCHHCCCTSS--S.....--HHHHHHHH CS
        HEPN  77 leeLekayiesrYpdakee.....yteedaeeal 105
                 ++eL   y + +Y   +++     +t+e a  ++
  CCE27704.1 110 VSELITQYFTFDYLYVFPPinramFTREMASPSI 143
                 5677778888888888888888888888887665 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
        HEPN   5 lrrAeedleaAellleegdydlacfhaqqaa 35 
                 l++Ae++le+A++ll ++ ++l++  +q a+
  CCE27704.1 176 LEMAERFLEEANRLLPHELHNLSLPTCQAAC 206
                 89*************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1604.03
//
Query:       CCE27705.1  [L=338]
Description: uncharacterized protein CPUR_01179 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.53   10.5   4.6        1.4    9.1   0.1    2.6  2  Nbs1_C    DNA damage repair protein Nbs1


Domain annotation for each model (and alignments):
>> Nbs1_C  DNA damage repair protein Nbs1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.5     0.018   3.2e+02      45      63 ..     102     120 ..      82     122 .. 0.71
   2 ?    9.1   0.1   8.1e-05       1.4      24      45 ..     292     313 ..     291     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.018
      Nbs1_C  45 veeesqqareesladdLFr 63 
                  ++e +q++e ++ ++LFr
  CCE27705.1 102 WRQEYHQQQEQQQQQQLFR 120
                 4556667777777788886 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 8.1e-05
      Nbs1_C  24 sDLlvheakknseleewlkeav 45 
                 sDL++h + k+  l+ w+  ++
  CCE27705.1 292 SDLIAHAQCKDARLDAWISHEA 313
                 8*****************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1655  (0.0923086); expected 358.6 (0.02)
Passed bias filter:                      646  (0.036031); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2472.21
//
Query:       CCE27706.1  [L=441]
Description: related to nitrate assimilation regulatory protein nirA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-07   31.2   0.1    1.1e-07   31.2   0.1    1.8  3  Fungal_trans  Fungal specific transcription factor domain
  ------ inclusion threshold ------
      0.083   13.2   0.0       0.18   12.1   0.0    1.5  1  DUF424        Protein of unknown function (DUF424)


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1      0.62   5.5e+03      69      97 ..      74     100 ..      52     102 .. 0.61
   2 !   31.2   0.1   1.2e-11   1.1e-07      15     141 ..     223     349 ..     209     403 .. 0.85
   3 ?   -3.0   0.0      0.33     3e+03      40      55 ..     419     434 ..     407     436 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.62
  Fungal_trans  69 fiafplraeilihedfsspssslwilqsL 97 
                    +   + ++i +hed+++  ++l+++  L
    CCE27706.1  74 AL--AIFQRIRQHEDAETIIEHLHASDLL 100
                   22..2344577788888888888777755 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 1.2e-11
  Fungal_trans  15 lhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdra 111
                   ++k++f+++     s++ + +spll++a lal ++++++et  +++ + +     + f  +a++l + +   p   ++++q+ l l++ +  +s  a
    CCE27706.1 223 FQKDQFMNDM---LSESIQFCSPLLVNATLALSCYCCHDETDGEKTRQLRA--LGYEFLAEAKKLWDLEKDRPIL-ITTIQAALVLSVTLNVCSAEA 313
                   6788888888...8888899************************8888885..5888889999999888888999.********************* PP

  Fungal_trans 112 lherhhgvavrlarslgLhrnpsyvgkks......l 141
                   l +r+   av +a + gL ++++   k++       
    CCE27706.1 314 LGMRYTRAAVAMAIDHGLYDESNAQRKSEpiqqahD 349
                   ********************9999886655544441 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.33
  Fungal_trans  40 llailalGalfseset 55 
                   l   +++G++fs+ ++
    CCE27706.1 419 LSILNQIGCHFSQPIA 434
                   5677899*****9876 PP

>> DUF424  Protein of unknown function (DUF424)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     2e-05      0.18       8      44 ..     304     338 ..     301     370 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2e-05
                 EEEEEEEGGGTT-EEEETTEEEE--HHHH--EEE-HH CS
      DUF424   8 klvavcdkellgktfkegelllnvsegfyggelasee 44 
                 + ++vc++e lg ++++  + + ++ g+y+++ a  +
  CCE27706.1 304 VTLNVCSAEALGMRYTRAAVAMAIDHGLYDESNA--Q 338
                 5789**************************9988..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3287.92
//
Query:       CCE27707.1  [L=291]
Description: related to NAD(P)H-dependent oxidoreductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-44  151.3   1.6    2.8e-44  150.9   1.6    1.1  1  adh_short        short chain dehydrogenase
    2.7e-37  128.6   2.0    5.5e-37  127.6   2.0    1.4  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    6.9e-10   39.1   3.8    8.3e-09   35.6   3.8    2.3  1  KR               KR domain
    0.00032   20.8   0.1    0.00055   20.0   0.1    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    0.00072   19.5   0.0     0.0014   18.6   0.0    1.5  1  ADH_zinc_N       Zinc-binding dehydrogenase
     0.0026   18.0   0.1     0.0059   16.9   0.1    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0071   15.9   0.4      0.016   14.8   0.2    1.7  2  NmrA             NmrA-like family
     0.0087   15.2   0.3      0.019   14.1   0.2    1.5  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
      0.029   13.8   0.3      0.054   12.9   0.1    1.5  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
      0.039   13.4   0.6        0.1   12.1   0.3    1.9  2  Epimerase        NAD dependent epimerase/dehydratase family
      0.057   12.8   0.0      0.091   12.1   0.0    1.3  1  DUF1776          Fungal family of unknown function (DUF1776)
      0.087   13.0   0.6       0.26   11.4   0.2    1.9  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
      0.091   13.1   0.0        3.3    8.1   0.0    2.4  2  SAP30_Sin3_bdg   Sin3 binding region of histone deacetylase c
       0.13   12.7   0.2       0.74   10.3   0.1    2.2  2  NAD_binding_7    Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   1.6   2.2e-47   2.8e-44       2     193 ..      19     235 ..      18     237 .. 0.94

  Alignments for each domain:
  == domain 1  score: 150.9 bits;  conditional E-value: 2.2e-47
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S............ CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi............ 87 
                 v+lvtG++sGIG+   ++la++Gakv++++r++ekl +v++e  +  +++++++q+Dvt++e+++ lv++++++ + l vLvnNAGi            
  CCE27707.1  19 VALVTGGGSGIGLMATQALAANGAKVYITGRTKEKLDKVVSEHFQGnEKQVIPLQADVTSKESIQSLVKEVESREKCLCVLVNNAGIsggrtlnadaks 117
                 89*************************************9987666699************************************************** PP

                 ...S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH......HCTTEEEEEEEEGGGTSB-TT.BHHHHHHHHHHHHHHHHHHHHHGGGT..EEE CS
   adh_short  88 ...tgsgpfselseeewervievNltgvflltravlpaml......kqssGrIvnvsSvagkvpvag.vaaYsAsKaavagltrslakelaptg..irv 174
                     +s++f++ s e+w +v+ +N+ +v+ +t+a+lp +       ++ sG+++n+sS+ g+v+ a+    Y AsKaa ++ltr l+ e+a+ g  irv
  CCE27707.1 118 aqdLKSTMFNDSSFETWTDVYRTNVAAVYFTTAAFLPLLQasserhQGWSGTVINISSISGLVKAAQkHFDYNASKAAAIHLTRMLSSEIASAGlkIRV 216
                 9998999*******************************9999987777789**********8777661567**********************999*** PP

                 EEEEESSBSSHHHHHHCTH CS
   adh_short 175 navaPGlvdTdmakelrek 193
                 n++aPG++ ++m++ ++++
  CCE27707.1 217 NGIAPGVFPSEMTAGESDD 235
                 ************9987765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.6   2.0   4.3e-40   5.5e-37       4     234 .]      27     286 ..      22     286 .. 0.88

  Alignments for each domain:
  == domain 1  score: 127.6 bits;  conditional E-value: 4.3e-40
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.............CS CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapk.............lk 84 
                   sgIG  + +ala++Ga+v +t + +e+ +k v e  +  +++v  l++DVt++e++++lv+ev+++ + l +lvnnagi+               ++
    CCE27707.1  27 SGIGLMATQALAANGAKVYITGRTKEKlDKVVSEHFQGNEKQVipLQADVTSKESIQSLVKEVESREKCLCVLVNNAGISGGrtlnadaksaqdlKS 123
                   8**************************888888888877777669**********************************987787777777777666 PP

                   S-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC........CEEEEEEEGGGTSBSTTTT.HHHHHHHHHHHHHHHHHHHHGG..GTEEEEEEE CS
  adh_short_C2  85 gpfletsreefdraldvnlyslfllakaalplmkeg........gsivnlssvgaervvpnyn.aygaaKaalealtrylAvelgp..kgiRvNavs 170
                   + f + s e + ++  +n+ +++ ++ a+lpl++++        g ++n+ss+++ +  ++ +  y+a+Kaa ++ltr l  e+++   +iRvN ++
    CCE27707.1 124 TMFNDSSFETWTDVYRTNVAAVYFTTAAFLPLLQASserhqgwsGTVINISSISGLVKAAQKHfDYNASKAAAIHLTRMLSSEIASagLKIRVNGIA 220
                   77888999***********************887666778899**********99998888887********************994456******* PP

                   E--BHCTGGGGSTTHHH....HHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 171 pgpikTlaasgikgfde....lleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   pg+   ++++g ++  +     +e +e +    r g+ e++a+a+lf   ++  y +G t+vvDgG+t
    CCE27707.1 221 PGVFPSEMTAGESDDTQksklPKEDFEGKVAAARPGKDEDMAQAILFATCNQ--YLNGDTVVVDGGYT 286
                   ********8887763332333567899******************9988865..*************8 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   3.8   6.5e-12   8.3e-09       3      99 ..      20     113 ..      19     210 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 6.5e-12
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                  l+tGG  g+Gl  ++ la++ga+ + +++R+  +++ +k   ++++ ++ +v  ++aDv++k+++++l++e++++e+ +   ++ Ag++  ++l+ 
  CCE27707.1  20 ALVTGGGSGIGLMATQALAANGAK-VYITGRT--KEKLDKVVSEHFQGNEKQVIPLQADVTSKESIQSLVKEVESREKCLCVLVNNAGISGGRTLNA 113
                 59********************96.899****..45555668899999****************************************998777754 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   4.3e-07   0.00055       5      67 ..      10      73 ..       6      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.3e-07
                  HHHS..TT-EEEEES-SHHHHHHHH.HHHCCT-CEEEEEESSHHHHHHHHHHH.T.ET-EEEEGC CS
  Shikimate_DH  5 kkleslkekkvlliGaGemaelvak.hLlakgvkkvvvaNRtlerakelaeel.kgeeiealkle 67
                  ++l +lk++ +l+ G G  + l+a+ +L+a+g+k v +++Rt e+ +++++e+ +g+e ++++l+
    CCE27707.1 10 DNLFDLKGRVALVTGGGSGIGLMATqALAANGAK-VYITGRTKEKLDKVVSEHfQGNEKQVIPLQ 73
                  4555799999*******98888775156666666.*************99887699999999886 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.1e-06    0.0014       1      31 [.      28      58 ..      28      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.1e-06
                HHHHHHHHHHHHTT-EEEEEESSHHHHHHHH CS
  ADH_zinc_N  1 gvGlaavqlAkalGaeviavdsseeklelak 31
                g+Gl+a q+++a Ga+v+ + +++ekl+++ 
  CCE27707.1 28 GIGLMATQALAANGAKVYITGRTKEKLDKVV 58
                8**************************9874 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   4.6e-06    0.0059       4      70 ..      23      89 ..      20     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.6e-06
                     E--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH...TTTCEEEEE--TTTHHHHHHHHHTTS CS
  Sacchrp_dh_NADP  4 iGa.GsvGqavaellarhfdvdaeitvadrskeklealaaka...lgvrfeaialdaenyeavLaallkeg 70
                      G+  ++G  +++ la+++    ++ + +r+kekl++++++    +++++++ + d+  +e+ +++l+ke 
       CCE27707.1 23 TGGgSGIGLMATQALAANGA---KVYITGRTKEKLDKVVSEHfqgNEKQVIPLQADVTSKES-IQSLVKEV 89
                     56624699999999999997...6***************999999*****************.****9997 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   1.3e-05     0.016       2      67 ..      21      91 ..      20     147 .. 0.80
   2 ?   -1.6   0.0       1.2   1.6e+03      97     123 ..     223     250 ..     174     271 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S...-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT-SE CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdt...kselakslkeaGvelv..kgdlddkeslvealkgvdv 67
                lv+G+   +G   ++al+++g kv +  R     ++ ++++++ +  +++  ++d+ +kes+++++k+v+ 
  CCE27707.1 21 LVTGGGSGIGLMATQALAANGAKVYITGRTKeklDKVVSEHFQGNEKQVIplQADVTSKESIQSLVKEVES 91
                6888888899*****************9988888999************999****************975 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
                 EEEEE---.GG.GT.SSS---TTTHHHH CS
        NmrA  97 fiySslgd.dndrsnaeepavphfdsKa 123
                 +++S++++ ++d ++++ + ++ f+ K+
  CCE27707.1 223 VFPSEMTAgESDDTQKSKLPKEDFEGKV 250
                 5677775424456666666666666665 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   1.5e-05     0.019       2      76 ..      21      89 ..      20      93 .. 0.84
   2 ?   -3.1   0.0       2.7   3.4e+03     246     287 ..     202     242 ..     194     244 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
                     EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.. CS
  Polysacc_synt_2  2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel 76
                     lvtG+g  iG  + +q l+ + +k+++  r+  kl+++ +e+ +  +k     +++p+ +dv+ ke+++++++e+
       CCE27707.1 21 LVTGGGSGIGL-MATQALAANGAKVYITGRTKEKLDKVVSEHFQGNEK-----QVIPLQADVTSKESIQSLVKEV 89
                     8*********7.67788889999****************998655544.....456888***********99965 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.7
                      ........SSSS-EEE----TT--SS-EEE-GGGGGGEEE-S CS
  Polysacc_synt_2 246 lsgleekkeedieikitGlRpGEklyEeLlieeesveetele 287
                      +   e   ++ ++i++ G+ pG    E+   e++++++++l+
       CCE27707.1 202 MLSSEIA-SAGLKIRVNGIAPGVFPSEMTAGESDDTQKSKLP 242
                      4433333.4778999999999988888888888877777765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.2e-05     0.054       1      76 [.      21      91 ..      21      93 .. 0.89
   2 ?   -3.2   0.0       3.4   4.3e+03     153     166 ..     189     202 ..     184     207 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT- CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqp 76
                   L+TG+   iG   ++ L ++g +v+++ r +++++    eh + +     e+++   ++D+t ++s+++l++ev+ 
     CCE27707.1 21 LVTGGGSGIGLMATQALAANGAKVYITGRTKEKLDKVVSEHFQGN-----EKQVIPLQADVTSKESIQSLVKEVES 91
                   8***9999*******************999999998888888764.....4578889***************9975 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.4
                    HHHHHHHHHHHHHH CS
  GDP_Man_Dehyd 153 YaaaKlyadwivvn 166
                    Y a+K++a ++++ 
     CCE27707.1 189 YNASKAAAIHLTRM 202
                    999*****999986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   7.8e-05       0.1       1     104 [.      20     139 ..      20     228 .. 0.67
   2 ?   -3.8   0.0       5.6   7.2e+03     216     226 ..     259     269 ..     259     275 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.8e-05
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHT CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknl 92 
                 +lVtG+   iG   ++al+++g +v    r +++  +   e+           ++d+t +++++ l+ke++  +  ++     v++  ++  +++++++
  CCE27707.1  20 ALVTGGGSGIGLMATQALAANGAKVYITGRTKEKLDKVVSEHFqgnekqvIPLQADVTSKESIQSLVKEVESREKCLC---VLVNNAGISGGRTLNADA 115
                 59********************9999999996666666666559999999999***************9988777777...445555555666666666 PP

                 HHHHHHHHHHH............H CS
   Epimerase  93 qgtlnlleaar............k 104
                 + +++l + ++            +
  CCE27707.1 116 KSAQDLKSTMFndssfetwtdvyR 139
                 666666666666666666666663 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.6
                 HHHHHHHHHHH CS
   Epimerase 216 eDvaeaillvl 226
                 eD+a+ail++ 
  CCE27707.1 259 EDMAQAILFAT 269
                 79****99985 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.1e-05     0.091     105     186 ..     123     208 ..     118     240 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.1e-05
     DUF1776 105 tgpietiplsswaselnerllspiltlqallplltsra...kqkakiivvnpsissslnlpfhapEalvssa.lsalfevLkrelr 186
                 +++++  + ++w+++  +++ + + t+ a+lpll++ +   +  + +++   sis  ++++    +   s+a   +l+++L+ e++
  CCE27707.1 123 STMFNDSSFETWTDVYRTNVAAVYFTTAAFLPLLQASSerhQGWSGTVINISSISGLVKAAQKHFDYNASKAaAIHLTRMLSSEIA 208
                 5677888899*************************988553333455555556665555555555544444313356666666666 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2    0.0002      0.26      11      57 ..      30      94 ..      25     106 .. 0.75
   2 ?   -3.5   0.0         8     1e+04      72      90 ..     265     284 ..     258     286 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
                   HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT..............EEE-SSHHHHHHHC....S CS
  NAD_binding_2 11 Gsnmalnllkagykvavynrtkekveelvaeg..............akaaesieelvasl....d 57
                   G    + l+++g kv++  rtkek++++v+e+              ++  esi++lv+++    +
     CCE27707.1 30 GLMATQALAANGAKVYITGRTKEKLDKVVSEHfqgnekqviplqadVTSKESIQSLVKEVesreK 94
                   555567889**********************9788888877777777777777777777766533 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8
                    HHHS.HCCC--TT-EEEE-S CS
  NAD_binding_2  72 vieg.llealkkgdilidgs 90 
                    +++    ++l+ +++++dg+
     CCE27707.1 265 ILFAtCNQYLNGDTVVVDGG 284
                    44443456778888888887 PP

>> SAP30_Sin3_bdg  Sin3 binding region of histone deacetylase complex subunit SAP30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0025       3.3      19      37 ..      46      64 ..      42      71 .. 0.81
   2 ?    2.3   0.0      0.17   2.2e+02      26      36 ..     178     188 ..     169     192 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0025
  SAP30_Sin3_bdg 19 rpgsskeqLaeaVarHFka 37
                     +g +ke+L + V++HF+ 
      CCE27707.1 46 ITGRTKEKLDKVVSEHFQG 64
                    5789*************85 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.17
  SAP30_Sin3_bdg  26 qLaeaVarHFk 36 
                      L++a ++HF+
      CCE27707.1 178 GLVKAAQKHFD 188
                     69********7 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00058      0.74       3      62 ..      13      69 ..      12     145 .. 0.69
   2 ?   -0.2   0.0       1.1   1.3e+03      27      59 ..     208     250 ..     169     280 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00058
  NAD_binding_7  3 ldlkgkkvlvvGgGe.vAarkvrklleagakvtvvapevkeeleelvklaeeelekdlega 62
                   +dlkg+  lv GgG+ +++   + l+++gakv +   + ke   +l k+ +e+++++ +++
     CCE27707.1 13 FDLKGRVALVTGGGSgIGLMATQALAANGAKVYITGRT-KE---KLDKVVSEHFQGNEKQV 69
                   699**********9669*****************8887.33...33333333333332222 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
  NAD_binding_7  27 leagakvtv..vapev......keele.....elvklaeeelekdl 59 
                    ++ag k+ v  +ap v      +         ++ kl +e++e+++
     CCE27707.1 208 ASAGLKIRVngIAPGVfpsemtA---GesddtQKSKLPKEDFEGKV 250
                    44555555555555553332221...02222333334444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2073.37
//
Query:       CCE27708.1  [L=717]
Description: probable glucan endo-1,3-beta-glucosidase bgn13.1 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-41  143.1   1.7    6.1e-32  111.2   0.1    2.4  2  Pectate_lyase_3  Pectate lyase superfamily protein


Domain annotation for each model (and alignments):
>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.1   3.4e-36   6.1e-32      21     212 ..      34     232 ..      27     235 .. 0.91
   2 !   30.8   0.2   1.4e-11   2.4e-07       9      74 ..     357     418 ..     343     452 .. 0.87

  Alignments for each domain:
  == domain 1  score: 111.2 bits;  conditional E-value: 3.4e-36
                      HHHHH..............HTSS-EEE-SEEEEESS-EEE-SSEEEEES-TTTEEEEE-TT-SS--SEEES-TTT-..-EEEEEEEEEEEGGGG CS
  Pectate_lyase_3  21 iqkais........casatttgavVYfPaGtYlvsspiilksgvqLvGdgngrpvlkaaaafvgaglidgdpyvsggsealiatnnfyrqirnl 106
                      iq+ai+        ++   ++++vVY+P+GtY vs++i+ +  + ++Gd+ ++pvlk a +f+g++li+g++ ++g    ++ + +f ++++nl
       CCE27708.1  34 IQAAIDsavgrsrqDEWLASQPRVVYLPSGTYTVSKTIKMRTDTIIMGDAIQPPVLKPAHDFDGDFLINGQDPATG----IMGELSFAVGLKNL 123
                      777777777789877778899***************************************************9966....99************ PP

                      -SS---S..SEEEES-EEEEEEEEEEES-SSEEE-SSS.---TT---SS--EEEEES-EEES-SS-SEEE.S-EEEEEES-EEE-S--SEEE-T CS
  Pectate_lyase_3 107 kiditav..apgatgihwqtaqatslenvefemseasg.tkhqgifiengsggflndlvfsglgdigiav.gnqqftvrnitfnnattgievlw 196
                      ++d+t++  + + t++ w +aq ++l+n++++m+ +++ + h+gi + +gs+  l d+++++ g+igi   g qq+  ++i+f ++  g+ ++ 
       CCE27708.1 124 ILDTTSMkaNHNFTALYWGVAQVAQLQNIKIQMPPSNKgKGHTGIKLGRGSTLGLADVRIEK-GQIGIWHgGHQQALYKSIYFYKNAVGMLISG 216
                      *******766666**********************997799***********999*******.*******88*****************99999 PP

                      T-EEEEEEEEEESSSE CS
  Pectate_lyase_3 197 gwgwtlknvkinnceg 212
                      g++++l + +++ c+ 
       CCE27708.1 217 GNTISLLAPTFDTCGA 232
                      9999988888888765 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 1.4e-11
                      ---EEEEE-HHHHHHHH......HTSS-EEE-SEEEEESS-EEE-SSEEEEES-TTTEEEEE-TT- CS
  Pectate_lyase_3   9 akgDGvtDdtaaiqkaiscasatttgavVYfPaGtYlvsspiilksgvqLvGdgngrpvlkaaaaf 74 
                      +kgDG+ D  a ++k++  + a  ++++ YfP G Y+v+s++  + g  +vG++   +++ +a++f
       CCE27708.1 357 IKGDGKSDEAASLNKVL--QFAVDNNKIAYFPYGDYRVESTLLVPIGSRIVGEA--WSTISGAGQF 418
                      79***************..**********************************9..6777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 5336.84
//
Query:       CCE27709.1  [L=201]
Description: uncharacterized protein CPUR_01183 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.6   0.1      0.033   14.3   0.1    1.6  1  DUF2188   Uncharacterized protein conserved in bacteria (DUF2
      0.065   13.6   0.2        0.1   13.0   0.2    1.3  1  AFT       Transcription factor AFT


Domain annotation for each model (and alignments):
>> DUF2188  Uncharacterized protein conserved in bacteria (DUF2188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   3.7e-06     0.033      22      52 ..      24      53 ..      21      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.7e-06
     DUF2188 22 sktfdTqeeAieaArelAkeqggselvihgr 52
                s tfd+ eeA++ Are A+ q g +l ih r
  CCE27709.1 24 SRTFDSIEEAVASARETAAVQ-GYSLAIHQR 53
                5689999************98.*******98 PP

>> AFT  Transcription factor AFT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.1e-05       0.1      49      87 ..      62     100 ..      32     105 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
                 .......................XXXXXXXXXX----EE CS
         AFT  49 skeeekaedestvseeetsskkkkkkravsrynsCPfrv 87 
                 ++ + + +++ + ++++t ++ +kk+r+ sr++sCPfr+
  CCE27709.1  62 TSVRLRCSKGRKFTPHDTGTHPSKKRRTKSRKESCPFRL 100
                 33344555666899999********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1620.18
//
Query:       CCE27710.1  [L=692]
Description: probable ATP-dependent RNA helicase DED1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-47  162.0   0.0    1.1e-46  158.9   0.0    2.0  2  DEAD           DEAD/DEAH box helicase
    1.1e-33  115.8   0.0    2.6e-33  114.7   0.0    1.6  2  Helicase_C     Helicase conserved C-terminal domain
     0.0078   16.2   0.0      0.013   15.5   0.0    1.3  1  ResIII         Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.081   12.1   0.0       0.12   11.6   0.0    1.1  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
        0.1   11.9   0.0       0.19   11.0   0.0    1.3  1  CMS1           U3-containing 90S pre-ribosomal complex subuni


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.9   0.0     3e-50   1.1e-46       1     175 [.     222     408 ..     222     409 .. 0.93
   2 ?    0.9   0.0     0.094   3.4e+02      62     105 ..     468     515 ..     452     528 .. 0.81

  Alignments for each domain:
  == domain 1  score: 158.9 bits;  conditional E-value: 3e-50
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...............kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliigg 84 
                 t++Q+ +ip++ gg+d++++a+TGsGKT+ fl+p+l++ + +               ++k  p  li++PtreL+ q++++ +kf     +r ++++gg
  CCE27710.1 222 TPVQKYSIPIVSGGRDLMACAQTGSGKTGGFLFPILSQAFLNgpsqvpanaagqfgrQRKAYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVYGG 320
                 79**********************************66655569999999999999989999*************************9889******** PP

                 SSHHHHHHHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
        DEAD  85 vaardqlskldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlpkdvkk 175
                  +  +ql+++++g+d++v+tpgrl+dll++g+++l ++++lVlDEadr+ld+gf+++i+ri++  +      + ++rq++++SAT+p+d++ 
  CCE27710.1 321 ADIGSQLRQIERGCDLLVATPGRLVDLLERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGED----MPSvANRQTLMFSATFPRDIQM 408
                 ************************************************************999873....22235688**********9986 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.094
                 HHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH...HTT.CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxxx RF
        DEAD  62 qtlnnlkkfkkyidlrvlliiggvaardqlskl...dng.vdivvgtp 105
                  +++nl++f+ + +  + +i g+ ++r+  ++l   +ng + i+v+t 
  CCE27710.1 468 RMADNLSEFLINQNFPATSIHGDRTQRERERALeyfRNGrCPILVATA 515
                 5788999999988888888989877777777774445778*****996 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.5   1.3e+04      18      61 ..     285     332 ..     279     340 .. 0.51
   2 !  114.7   0.0   7.3e-37   2.6e-33       1     111 []     443     552 ..     443     552 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.5
                 EEEEEESSHHHHHH....HHHHHHHTTSTEEEESTTSTHHHHHHHHHH CS
  Helicase_C  18 kilifvntidrlek....vklllekkgikvavlhgelpqnereeileq 61 
                 ++li ++t++ +++     + +  ++ ++ +v++g     ++++ +e+
  CCE27710.1 285 TSLILAPTRELVSQiyeeSRKFAYRSWVRPCVVYGGADIGSQLRQIER 332
                 567777777755422223333333334666666665555555555554 PP

  == domain 2  score: 114.7 bits;  conditional E-value: 7.3e-37
                 HHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   1 dkleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 dk + ll++l +++ gg +lifv+t++++++++ +l ++++ ++ +hg+ +q+ere++le f++g++ +L+at va+rG+dip+v++Vin+dlp++v++
  CCE27710.1 443 DKRSVLLDIL-HTHAGGLTLIFVETKRMADNLSEFLINQNFPATSIHGDRTQRERERALEYFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDVDD 540
                 5778899999.99****************99777778889*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y++riGRtgRag
  CCE27710.1 541 YVHRIGRTGRAG 552
                 **********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.7e-06     0.013      26     170 ..     237     403 ..     203     404 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.7e-06
                 EEEEEESTTSTHHHHH.HHHHHHH-S......................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-S CS
      ResIII  26 rglikmaTGtGKTlva.aklierllkkgkee.................kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkk 105
                  ++  + TG+GKT    + +  + + +g+ +                   l+l+p+++l++q +ee +kf+     + + ++ g    +  ++ +  ++
  CCE27710.1 237 DLMACAQTGSGKTGGFlFPILSQAFLNGPSQvpanaagqfgrqrkaypTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVYGGADIGSqLRQIERGCD 335
                 5666789******988799999999999999**************************************998887664444333333334455589*** PP

                 EEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHH.....HHT---SEEEEEESS-S CS
      ResIII 106 ilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswrei.....lekfkeavllglTATpe 170
                 +lv+t  +l   +     e+ + +  ++++++ DEa r+ ++    ++r+i     + ++ +   l ++AT++
  CCE27710.1 336 LLVATPGRLVDLL-----ERGRISLCNIKYLVLDEADRMLDMgfePQIRRIvegedMPSVANRQTLMFSATFP 403
                 *************.....88999999999************97655999986664444456699999999987 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.3e-05      0.12      79     133 ..     481     534 ..     467     562 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.3e-05
  ERCC3_RAD25_C  79 klkkpyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqiss 133
                    ++  + i+G+ +++er + l+ f++  ++  ++   v+   +D+P+ + +i  + 
     CCE27710.1 481 NFPATSIHGDRTQRERERALEYFRNG-RCPILVATAVAARGLDIPNVTHVINYDL 534
                    5556789****************976.79999999*************9997654 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.3e-05      0.19     182     209 ..     338     365 ..     330     370 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.3e-05
        CMS1 182 vGtpgRildLleeeslsvdeLkrivlDa 209
                 v tpgR++dLle + +s+ ++k++vlD 
  CCE27710.1 338 VATPGRLVDLLERGRISLCNIKYLVLDE 365
                 78************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 5217.89
//
Query:       CCE27711.1  [L=278]
Description: probable multicatalytic endopeptidase complex chain PRE1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-39  135.9   0.0    1.4e-39  135.6   0.0    1.1  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.0   7.8e-44   1.4e-39       8     187 ..      80     256 ..      77     259 .. 0.92

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 7.8e-44
                 EEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTTTTTSE CS
  Proteasome   8 vGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgrrpfgv 106
                 +Gi+gkd+ ++aa k a +g+++l+ s+ +K + +++h+++af+G+a+D+ +++++++++aqly++r++++++++ l++ v ++l++  +rs rrp+ v
  CCE27711.1  80 LGITGKDFTIIAASKAAMRGATILKASD-DKTRALNKHTLMAFSGEAGDTVQFAEYIQRNAQLYSMRNETDLSPSGLAHFVRDQLAS-SLRS-RRPYNV 175
                 8***********************9998.**********************************************665555555555.5555.6***** PP

                 EEEEEEEE.TTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEE CS
  Proteasome 107 slliagvd.eeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgkniev 187
                 +ll++gvd  +g+p+Ly++d+ +++++  +++a+G++++++ ++l+k+ ++d+tl ++++l   ++ e+ +r  +  k++ v
  CCE27711.1 176 NLLMGGVDpITGKPHLYWLDYLAALADV-PYAAHGYAQYYCLSILDKHHHPDITLGQGIKLLTLCVDELKRRLPIDFKGMVV 256
                 ********889*****************.6****************************************999888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2369.84
//
Query:       CCE27712.1  [L=613]
Description: related to a component of the yeast U3 snoRNP Rrp9p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-24   85.1   6.3    0.00014   22.6   0.1    6.5  6  WD40         WD domain, G-beta repeat
     0.0045   16.4   0.0      0.079   12.3   0.0    2.6  3  WD40_like    WD40-like domain
     0.0049   17.1   0.0       0.14   12.5   0.0    3.1  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0091   14.7   0.0        0.2   10.3   0.1    2.7  4  Nup160       Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.012   14.9  12.2      0.024   13.9  12.2    1.4  1  Nha1_C       Alkali metal cation/H+ antiporter Nha1 C terminu
       0.17   12.4   0.6        4.5    7.9   0.1    3.0  3  PQQ_3        PQQ-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.099     3e+02       6      37 ..     173     203 ..     168     204 .. 0.76
   2 !   21.0   0.0   1.4e-07   0.00042       5      38 .]     248     282 ..     244     282 .. 0.89
   3 !   20.9   0.0   1.6e-07   0.00048       2      38 .]     287     324 ..     286     324 .. 0.94
   4 !    9.4   0.0    0.0007       2.1       6      38 .]     333     366 ..     329     366 .. 0.84
   5 !    5.9   0.1    0.0085        25      21      38 .]     407     424 ..     394     424 .. 0.86
   6 !   22.6   0.1   4.7e-08   0.00014      13      38 .]     469     494 ..     459     494 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.099
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  +++  +svts+   +  +++ ++s+D t++ W
  CCE27712.1 173 FFRTNtNSVTSI--ASCPPFVYTASKDLTLHKW 203
                 57788889**99..6666778899999988877 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.4e-07
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 r ++ H + + ++a spdg+++++G++D+++ ++d
  CCE27712.1 248 RNYKRHtGQILAVAASPDGKYVVTGGEDRKIIVYD 282
                 567889666***********************998 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 1.6e-07
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++++lt H + vt+l f++  + + s+s+D+tv++W+
  CCE27712.1 287 KPVKVLTHHrDAVTALVFQRGTSQMYSASRDRTVKVWS 324
                 7899***99888*************************5 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0007
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 tl GH ++v +++     + ++ G +D+t r+W+
  CCE27712.1 333 TLFGHqDHVVDIDALAQERCVSVGARDRTARLWK 366
                 56699777999988888888999*9********6 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.0085
                 TSSEEEEEETTSEEEEEE CS
        WD40  21 dgawlasGsdDgtvriWd 38 
                 d +++++Gsd+g + +W+
  CCE27712.1 407 DDDLFVTGSDNGAISLWS 424
                 667799***********5 PP

  == domain 6  score: 22.6 bits;  conditional E-value: 4.7e-08
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 +t+l+  p+++ ++sGs+Dg++riW+
  CCE27712.1 469 ITALKALPYSDIILSGSWDGHIRIWK 494
                 99***********************6 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.6e-05     0.079       3      46 ..     257     300 ..     255     333 .. 0.90
   2 ?    0.3   0.0      0.11   3.4e+02      48      74 ..     403     429 ..     396     437 .. 0.79
   3 ?   -2.3   0.0      0.71   2.1e+03      54      76 ..     479     502 ..     475     512 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvi 46 
                 i ++  s++g++++ Gg+d k+ v++ ++l+ v ++++ +d v 
  CCE27712.1 257 ILAVAASPDGKYVVTGGEDRKIIVYDADTLKPVKVLTHHRDAVT 300
                 678999*********************************99986 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.11
   WD40_like  48 vklldddlilvvtlDGtillsllenee 74 
                 + ++dddl++ ++  G+i+l  l++++
  CCE27712.1 403 ISMIDDDLFVTGSDNGAISLWSLTKKK 429
                 568999999999999999998888776 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.71
   WD40_like  54 dlilvvtlDGtillsllenee.ev 76 
                 d il ++ DG i   +l++++ ++
  CCE27712.1 479 DIILSGSWDGHIRIWKLTEDKkKI 502
                 78999999***9999999887455 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   4.5e-05      0.14      35      90 ..     251     305 ..     233     307 .. 0.89
   2 ?   -0.3   0.0      0.46   1.4e+03      49      74 ..     407     432 ..     405     440 .. 0.85
   3 ?   -2.1   0.0       1.6   4.8e+03      47      69 ..     475     497 ..     466     503 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.5e-05
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  + + +++ ++a +pdgk  + + +d ++ ++da + k v+ l+ +++ avt l ++
   CCE27712.1 251 KRHTGQILAVAASPDGKYVVTGGEDRKIIVYDADTLKPVKVLTHHRD-AVTALVFQ 305
                  567789999999*******************************9999.69999876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.46
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvh 74 
                  d+ l++ + ++g+++l +  ++k v 
   CCE27712.1 407 DDDLFVTGSDNGAISLWSLTKKKPVY 432
                  788999999*********99999775 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.6
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaes 69 
                   p   ++  +  dg++r+ +  +
   CCE27712.1 475 LPYSDIILSGSWDGHIRIWKLTE 497
                  55566777788888888876654 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.58   1.7e+03     201     249 ..     159     207 ..     139     229 .. 0.71
   2 !   10.3   0.1   6.6e-05       0.2     229     255 ..     307     333 ..     286     348 .. 0.83
   3 ?   -3.5   0.0      0.98   2.9e+03     229     256 ..     407     434 ..     401     438 .. 0.78
   4 ?    0.5   0.0      0.06   1.8e+02     230     312 ..     478     583 ..     457     594 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.58
                 T..TSS--SS---TT-ECEEEEET.....TTTEEEEEETT-EEEEEETTT CS
      Nup160 201 g.lladpsrrksgasvalsldvavavveigqtylfalsrdgkLrvWnllt 249
                 + +++ + ++ s++ +  +++ ++++++    +++++s d +L  W +++
  CCE27712.1 159 QlWNQLAVKKASQTFFRTNTNSVTSIAS-CPPFVYTASKDLTLHKWRTQD 207
                 4455556666666666667777777776.888999999999999994443 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 6.6e-05
                 TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat 255
                 g +  +++srd++++vW+l+t+  ++t
  CCE27712.1 307 GTSQMYSASRDRTVKVWSLETLAYIET 333
                 778889***************988877 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.98
                 TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclati 256
                 ++++ ++ s +g + +W+l+ +k+++ +
  CCE27712.1 407 DDDLFVTGSDNGAISLWSLTKKKPVYIQ 434
                 7777788889999999**9999999876 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.06
                 TTEEEEEETT-EEEEEETTTTEEEEE.EE--...........-SSSTTS--SSEESEEESSSSEEEE......................E--GGG-EEE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclat.idll..........rdeeaqdessskstldpaesslirvs............dggqsylvvtyspssggefk 305
                 ++++++ s dg +r+W l+ +k       +l          +++e+ +++  k  +  ++ s +++             d+g+ +l+++ +  ++++f 
  CCE27712.1 478 SDIILSGSWDGHIRIWKLTEDKKKIEpLGILgdlpavvngtKTQEKGKKQPPKQASHGTPPSHRPIPgiinditifergDRGKDGLCIVAAVAQEHRFG 576
                 688999999*******99877643333444455559988886666666666665666666666666677799999999999999999999999999999 PP

                 EEEEEEE CS
      Nup160 306 vwkvkke 312
                  w+v+k+
  CCE27712.1 577 RWQVRKQ 583
                 9999876 PP

>> Nha1_C  Alkali metal cation/H+ antiporter Nha1 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9  12.2     8e-06     0.024     365     452 ..      31     115 ..       9     119 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8e-06
      Nha1_C 365 d.rkltpapkerkeasqaseseeseeseedeeeesseedsssdeeseeeetaaerrrrlaalessededseddgteegETaaERrRRla 452
                 + ++  ++p++r+ as+as s++ ++++ + ++es + ++s+d++     +a + +r + ++++++d++s++d  +e+ETaaE+r Rla
  CCE27712.1  31 KsTSYGNKPAKRSGASAASTSKNGNKKSVSARDESISGSDSDDDDGL--DSASNASRDDGDTKDVKDGQSSED--DEEETAAEKRLRLA 115
                 23234455666677777777777777666666666666666666543..588899999999999999999999..88********9997 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0015       4.5      20      40 .]     265     285 ..     249     285 .. 0.83
   2 ?    1.0   0.0      0.22   6.4e+02      19      33 ..     406     420 ..     388     421 .. 0.84
   3 ?   -3.6   0.0         6   1.8e+04      26      33 ..     483     490 ..     479     491 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0015
       PQQ_3  20 dgglvyvgtgdGtlyAlDaet 40 
                 dg +v++g++d ++  +Da+t
  CCE27712.1 265 DGKYVVTGGEDRKIIVYDADT 285
                 6889***************98 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.22
       PQQ_3  19 vdgglvyvgtgdGtl 33 
                 +d++l ++g+++G +
  CCE27712.1 406 IDDDLFVTGSDNGAI 420
                 799999****99976 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 6
       PQQ_3  26 vgtgdGtl 33 
                  g++dG++
  CCE27712.1 483 SGSWDGHI 490
                 5899**98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       940  (0.052429); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.39
# Mc/sec: 4673.70
//
Query:       CCE27713.1  [L=1206]
Description: related to protease ULP2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-37  128.6   0.0    5.4e-37  127.7   0.0    1.4  1  Peptidase_C48  Ulp1 protease family, C-terminal catalytic dom


Domain annotation for each model (and alignments):
>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   0.0     3e-41   5.4e-37       1     190 [.     667     923 ..     667     930 .. 0.97

  Alignments for each domain:
  == domain 1  score: 127.7 bits;  conditional E-value: 3e-41
                    ---BHHHHHHHHHHHHHHHHH.CCCTCCCEEE--THHHHHHC..........SS.......TCHCHHHCTTCCCCCS..-GGG-SEEEEEEEC.TT CS
  Peptidase_C48   1 ewlndtvidfylkllaerles.seskaervhflntffvskLtkavkdfkknkskkkfkeskkkdlyngvrrwtrkvnkedlfdkdiiyiPinedgk 95 
                    ++lnd  i f++++ +  le+ s++  +rv+f+ntff+ kL                  +k+k +y gv+ wt+kv   d+++ d+i++P+ne   
     CCE27713.1 667 QFLNDNLISFFIRYTQYNLERqSPELLRRVYFFNTFFFEKLR----------------STKGKINYDGVKAWTAKV---DVLSYDYIVVPVNE-HA 742
                    68****************************************................2234788***********...**************.** PP

                    EEEEEEEETCCC.................................................................................... CS
  Peptidase_C48  96 HWvlliinlpdk.................................................................................... 107
                    HW+l+ii++  +                                                                                    
     CCE27713.1 743 HWYLAIICNAANaangipqeskdegksehvegsspriaaierhmcdvnirdgdtkersadmrnpssptissktmqsasqvskaaaspdnqtsaaaq 838
                    ************************************************************************************************ PP

                    ........EEEEE-TTS-SSH.HHHHHHHHHHHHHHHHHCCCCCSTT-.GGGEEEEEEE-----SSCCCHHHHHHHHHHHHHCTHHCHHHH CS
  Peptidase_C48 108 ........tililDSlislhtvkkenrpinnlkpyLleealkkkqkqldltpfeierltkvpqqknsgDCGiyvlkfiellaegapqessv 190
                            +i++lDSl+++h+     ++i +l+ yL++ea++kk  +l  tp    +++k+pqq+n++DCG+y++ +i  +++++ +++  
     CCE27713.1 839 rhhdprapRIITLDSLAGSHP-----STIRALRDYLIAEAKDKKGVDL-ATPPNGMTAKKIPQQDNFCDCGVYTIGYIASFMKDPDETIRK 923
                    *********************.....**********************.9999999999**************************999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 8537.85
//
Query:       CCE27714.1  [L=210]
Description: uncharacterized protein CPUR_01188 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1509.09
//
Query:       CCE27715.1  [L=460]
Description: probable Mannose-1-phosphate guanylyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-43  148.5   0.0    3.9e-43  147.8   0.0    1.3  1  NTP_transferase  Nucleotidyl transferase
    6.4e-05   22.9   0.1    0.00011   22.1   0.1    1.4  1  MannoseP_isomer  Mannose-6-phosphate isomerase
  ------ inclusion threshold ------
      0.074   12.8   0.0       0.18   11.5   0.0    1.6  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly
      0.074   12.8   0.0       0.15   11.9   0.0    1.4  1  DUF3574          Protein of unknown function (DUF3574)
       0.12   12.3   0.3       0.25   11.3   0.3    1.4  1  DASH_Dad4        DASH complex subunit Dad4


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.8   0.0   1.1e-46   3.9e-43       3     241 ..     100     381 ..      98     387 .. 0.93

  Alignments for each domain:
  == domain 1  score: 147.8 bits;  conditional E-value: 1.1e-46
                      EEE--S--GGGTTCCTTSSGGGSEETTET..ETTHHHHHHHHH.TT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHT CS
  NTP_transferase   3 vILaGGsGtRLwPLtrtlakklvpvlgke..rliqatlsrlan.sgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvala 93 
                      +I aGG+GtRLwPL+r+ ++k ++  + +  +l+q t+ rl+  +g  ++ vv  + hs+++++ql + +    + +  +ep +k++  A+ la
       CCE27715.1 100 IIPAGGAGTRLWPLSRENHPKFLLDIDLSgrSLLQSTWRRLVPlAGASRMTVVAGPSHSESIQKQLPQLE----SSNLFTEPGPKDSMAAIGLA 189
                      788*******************998877667***********99***********************998....479***************** PP

                      HHHHTTSSE..EEEEETTEEEEST..THHHHHHHHHTHSSTT.SEEEEEEESS-CTTSEEEEEC.........TTSBEEEEECS-SSHSHCSEE CS
  NTP_transferase  94 aelledeksdelvlvLggDhlikd..ayeeavkkaiekaakg.tvtfgivpveeateyGviead.........eegrverfvEKPkeakasela 175
                      a +l +++ ++++  +++Dh+i    a+ + v++a++ a++g +vt+gi p ++at++G+++ +          ++ v  f+EKP++ +a++++
       CCE27715.1 190 AAVLLKRDPEAVIGSFAADHMIAGedAFLNSVTEAVKVAKEGfLVTIGIAPSHPATGFGYVKLGdklnissapTARLVSAFKEKPDAYTAAKYI 283
                      ********99************8778**************************************7777766554459***************** PP

                      CCSEEEEETTHHHHHHH.CCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE...............................-EEEXSSHHH CS
  NTP_transferase 176 ssGiYvfnsevllflak.dleelkrgedeitdilpkaleegkvalaflfkdae...............................yWsDvGtlds 237
                      ssG+Y +n ++++ +a+  +e  k+ e+++ d l ++ ++ +++++  +  +e                               +W+DvG+++s
       CCE27715.1 284 SSGNYRWNAGMFVTKAStLMELVKEYEPDLHDSLTRIADAWEDKAEREAILNEvwpkleklaidnaiaepaaaegkvavipatfGWDDVGDFSS 377
                      *****************8899999************99999999998888877999************************************** PP

                      HHHH CS
  NTP_transferase 238 llea 241
                      l e+
       CCE27715.1 378 LAEM 381
                      *986 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   3.1e-08   0.00011       1      40 [.     419     458 ..     419     460 .] 0.91

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.1e-08
  MannoseP_isomer   1 vGvedlvvvetkdavlvadkdkvqdvkkvveelkaegree 40 
                      +Gv+dlv+v+  da++v+++ ++q+vk++v + +++g ++
       CCE27715.1 419 LGVDDLVIVDVPDALMVTTRARAQEVKSLVASCRKAGFKK 458
                      69****************************9999887665 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.1e-05      0.18       2      61 ..      98     163 ..      97     178 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.1e-05
                 EEEEECTTSSCTT....-SSS-GGGSE..ETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHHHHH CS
        IspD   2 vvvipAAGsGkRm....kaglpKqfle..lkgqtllehtvdallaskavdkivvvvseddteefeq 61 
                  v+ipA G G+R+    ++++pK +l+  l+g++ll+ t + l      +++ vv  + + e +++
  CCE27715.1  98 YVIIPAGGAGTRLwplsRENHPKFLLDidLSGRSLLQSTWRRLVPLAGASRMTVVAGPSHSESIQK 163
                 58**********86665799***99762268***********999999999988888877666654 PP

>> DUF3574  Protein of unknown function (DUF3574)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.1e-05      0.15      43      94 ..     284     335 ..     272     340 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.1e-05
     DUF3574  43 akGqwrdetgalirekskvlillhpdteakearieeireaYkerfqqesVlr 94 
                 ++G++r ++g  + ++s ++ l+ + +++ ++++++i++a++++ ++e++l 
  CCE27715.1 284 SSGNYRWNAGMFVTKASTLMELVKEYEPDLHDSLTRIADAWEDKAEREAILN 335
                 68**********************************************9985 PP

>> DASH_Dad4  DASH complex subunit Dad4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3     7e-05      0.25      11      46 ..       9      44 ..       4      49 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7e-05
   DASH_Dad4 11 alLsRIiknvekLnesvvelnkeleeinkkNknvel 46
                a L+ I++ v+k ne + +l +e ++  ++N+++++
  CCE27715.1  9 AALAKIMEVVQKQNEEMSQLRHECAQLRQSNADISM 44
                6799*****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      682  (0.0380389); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3451.91
//
Query:       CCE27716.1  [L=226]
Description: uncharacterized protein CPUR_01190 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-38  131.6   0.8    4.2e-37  127.2   0.8    2.0  1  SPC22     Signal peptidase subunit


Domain annotation for each model (and alignments):
>> SPC22  Signal peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.8   2.4e-41   4.2e-37       2     161 ..       5     192 ..       4     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 2.4e-41
       SPC22   2 lqRlnavlalaltvlavlvalialsslflkls.kakskisnvkvsvaksvrdygsnrkkkdraklkfdldaDlsslfnWNtKqlFvyltaeYetkkn.. 97 
                 ++R+++ + +++tv +vl+a+ia+++++  +s + ++  +n++v    + r   +++kk+++a +kf+ldaDlsslf+WNtKq+Fvy+ta+++ +    
  CCE27716.1   5 FTRIQNAFGFFTTVACVLAAFIAATDFLAVRSpSGTIIPTNLQV---VKGRPHYYSSKKEEYAIIKFSLDADLSSLFTWNTKQVFVYVTADWPPTAYan 100
                 58*************************65543377777777877...4444433459***********************************9887655 PP

       SPC22  98 evNqvvlWDkIirsked...........................aklklknvkskYslkdqeksLrgrk.vtltLhwnvmPvvGlltygeta 161
                 ++N+ v+WD+Ii++++                              lklkn++ kY++   + ++++ + vtl+Lh+nv+P+vGllt++ ++
  CCE27716.1 101 ATNSAVIWDTIITNPSAdhlknigpvamkklrksaegkvidpsrGLLKLKNQRPKYQITHPSGHIAQVDnVTLKLHYNVQPWVGLLTWNMAE 192
                 8**************7557999999999999999999999996555999999***************999******************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1611.86
//
Query:       CCE27717.1  [L=1511]
Description: probable KEM1-multifunctional nuclease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.8e-103  345.2   5.9   9.6e-103  344.5   5.9    1.3  1  XRN_M       Xrn1 helical domain
      5e-87  291.3   0.0    8.4e-87  290.6   0.0    1.4  1  XRN_N       XRN 5'-3' exonuclease N-terminus
    1.1e-67  227.5   0.1      2e-67  226.7   0.1    1.4  1  XRN1_D1     Exoribonuclease Xrn1 D1 domain
    6.1e-33  112.9   0.1    1.9e-32  111.3   0.1    1.9  1  XRN1_D2_D3  Exoribonuclease Xrn1 D2/D3 domain
      1e-17   64.0   0.0      2e-17   63.1   0.0    1.5  1  SH3_12      Xrn1 SH3-like domain
    1.2e-06   28.5   0.0    2.4e-06   27.5   0.0    1.5  1  Xrn1_D3     Exoribonuclease 1 Domain-3
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.37   10.8   0.0    1.9  2  R3H         R3H domain


Domain annotation for each model (and alignments):
>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.5   5.9  3.7e-106  9.6e-103       2     335 ..     270     674 ..     269     691 .. 0.87

  Alignments for each domain:
  == domain 1  score: 344.5 bits;  conditional E-value: 3.7e-106
       XRN_M   2 fdleriiDDfvFlcFFvGNDFLPhlPsLeiregaidlllkvYkkelkklggyltdngevkldrveklvslvgkveekifrkrkeredrkekklakeeea 100
                 fdler+iDDf+ ++FFvGNDFLP lP L+i+ega+  ++ vYk++l+k++gy+ +ng ++++r +kl+++++k e + f++  ++e+   +k+ +++ +
  CCE27717.1 270 FDLERVIDDFILMAFFVGNDFLPNLPGLHIHEGALANMFGVYKTVLPKCDGYINENGVINMSRLDKLLAELNKLELSSFETDVSNEKWFVSKQMEKKLE 368
                 89********************************************************************99999999998888888877777777666 PP

       XRN_M 101 skedaaneeaavaeeklseskvak....................................................................saeaeae 131
                 +++ a+ +++++ +  +++++ ++                                                                    ++e   e
  CCE27717.1 369 AQNGAKRKDTKTGQLVITSAQRDLwrqklrpyvskrsdepldlgyelkaadrkfvkdiadamhldwatkddedanrhlvlsfpikpgkqdgdDDEEDDE 467
                 666666666666666666666665778889**********************************************************98764444444 PP

       XRN_M 132 aeaeaeaeakaekekrekaekeleeseeeeeeeDkv.rLgeeGykeRYYkekfev.sseeieqrre.vvqkYveGLcWvlrYYyqGvaSWkWfyPyhya 227
                 +e+e + +a ++ +  +ka+      e+ +++ Dk+ +    G+k++YY +kf + +se+ +  ++ + ++Yv+GL Wvl YYy+G+aSW Wfy yhya
  CCE27717.1 468 EEEEGTWAAYRVIKSYDKATVVDMTAEDAQQHYDKLfQDKYAGWKTKYYLQKFPEwESEKYASEQKgLCENYVQGLQWVLLYYYKGIASWPWFYRYHYA 566
                 444444444444444444444444455555556665244578***********99999999988888******************************** PP

       XRN_M 228 PFaSDlknladlkikFekgspfkpleqLmavlPaaskkalPkayqkLmtdpdSpiidlypedfeidlnGkrvaWqgvaklPfidekrLlealakleeeL 326
                 P +SD+++     ++F+kg+pfkp eqLm+vlP +skk +Pk y++Lmt+p+Spiid+yp+dfe+d+nGk++ W +v+k+PfidekrLl+a+a+ +e+L
  CCE27717.1 567 PLISDVVKGLGADLNFKKGQPFKPYEQLMGVLPDRSKKIVPKVYHDLMTNPNSPIIDFYPRDFELDMNGKKMEWEAVVKIPFIDEKRLLDAMATKNEDL 665
                 ******999999*************************************************************************************** PP

       XRN_M 327 teeEkkRNt 335
                 +++Ek+RN 
  CCE27717.1 666 EPDEKARNG 674
                 ********6 PP

>> XRN_N  XRN 5'-3' exonuclease N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.6   0.0   3.3e-90   8.4e-87       1     242 []       1     222 [.       1     222 [. 0.92

  Alignments for each domain:
  == domain 1  score: 290.6 bits;  conditional E-value: 3.3e-90
                 XXX-HHHHHHHHHSGGGEEE------SSSS.-EEEEEEETHHHHHHHHS-SSS-......--SSHHHHHHHHHHHHHHHHHHH-EEEEEEEE------H CS
       XRN_N   1 mGvpklfrwlserypkivkevieeeeeeek.efdnLYlDmNgiihkcshkedkeekelskkpkteeeifkkifkyidrlvkivrprkllylavDGvaPr 98 
                 mGvpk+frwlseryp +++++i e++     efd+LYlDmNgiih+c+hk+   + e+++ + +eee+f +if+yi++l+ +++p++l+++a+DGvaPr
  CCE27717.1   1 MGVPKFFRWLSERYP-AISQLIAENR---IpEFDCLYLDMNGIIHNCTHKD---AGEDVSFRLSEEEMFIRIFNYIEHLFGKIKPKQLFFMAIDGVAPR 92 
                 9**************.7777774444...33******************94...45678899************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-BB--------GGGSSTTSHHHHHHHHHHHHHHHHHHHH-GGGGG-EEEEE-TTS-S-HHHHHH CS
       XRN_N  99 aKmnqqRsRRfrsakeakeekeekeelkeelekeekeeeeeeekfdsnvitpGtefmeklsealkafikkklkedpawknlkvilsdaevpGEGEhKim 197
                 aKmnqqR+RRfr+a + + ++e++ +        e  e ++ee+fd       tefm+kls++l++f++kk+++d  w+ ++++ls++evpGEGEhKim
  CCE27717.1  93 AKMNQQRARRFRTALDVEVAREKAIK--------EGVEMPKEEAFDR------TEFMAKLSQQLRYFVNKKVSQDADWQGCEIVLSGHEVPGEGEHKIM 177
                 ****************9999875433........2333456788997......9********************************************* PP

                 HHHHHHHTSTTS-TT-EEEEE---THHHHHHHHHT-SSEEEEEE- CS
       XRN_N 198 efirkqrskpeydpntrhviyglDaDLillsLathepniliLree 242
                 e+ir+ +s+p+y++n rh++yglDaDLi+l+L++h+p++++Lree
  CCE27717.1 178 EYIRNAKSQPNYNHNVRHCLYGLDADLIMLGLLSHDPHFCLLREE 222
                 *******************************************96 PP

>> XRN1_D1  Exoribonuclease Xrn1 D1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.7   0.1   7.8e-71     2e-67       1     192 []     725     913 ..     725     913 .. 0.98

  Alignments for each domain:
  == domain 1  score: 226.7 bits;  conditional E-value: 7.8e-71
                 SS-TT---GGGS-TTS--STTS-EEEEE.E-----SSSS--SS-EEEEEE--------HHHHHHHHBTSEEEESGGG-EEEEEEEEE-SS-EEEEE-.. CS
     XRN1_D1   1 GLlegaklgaealaGFPsLktlpftaeL.efhgvnvFqqeSrneSmvvtiedkeenlkleelakeklgkrvfvgyPfLrEakvvavsdelfkyekelle 98 
                 GL+ ga ++ ealaGFP+++tlp+ta+L e+  v+vFqqeSrn+S+vvt++d ++ +++ e  k+klg++++vgyPfL+Eak+++v+delf++e   l+
  CCE27717.1 725 GLTSGALVKVEALAGFPTMHTLPYTAQLtENCRVKVFQQESRNPSVVVTLTD-THLRTSIEKFKAKLGQQCYVGYPFLQEAKIIKVQDELFTFE---LS 819
                 9***************************77789*******************.8888999999*******************************...78 PP

                 SSSEEEEEE--THHHHHHHHHHHHHHHHHHHHHH-EEES--S-EEEEEEEEEEEE-TTS-EEEEE-SS-EE...EEGGG-BS--SS--GGGS-B CS
     XRN1_D1  99 ekkkkvvsrphsekekkefkkkaerierkyskrlgviigevevlvhveplkGLkrteeGalvKeyeeeeeleteyalqlvveevaneDeRfiek 192
                 ++ k++v+++hs++e+ +f+k+ae ++ ++ +rlgv+ig+ve+lvhv++lkGL++teeGal+Key+e+++++  ya+q+vv++v+neDeRfie+
  CCE27717.1 820 DNGKDIVTKDHSNREAADFSKEAEFLQAWHVNRLGVNIGQVECLVHVHMLKGLVKTEEGALIKEYAENPSVRGLYASQTVVDDVVNEDERFIER 913
                 999******************************************************************************************8 PP

>> XRN1_D2_D3  Exoribonuclease Xrn1 D2/D3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   0.1   7.3e-36   1.9e-32       1      87 []     917    1002 ..     917    1002 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.3 bits;  conditional E-value: 7.3e-36
                  -HHHHS-TT-EEEE-SCTCTTEEEEEEEESSSEEEEEEEBS-SS---SHHHHHHHHHHHHS-EE------EEHHHHHHHHHHHCHXX CS
  XRN1_D2_D3    1 pieeEFPegskvffLGeyaYGrpaevtghsekklsvvlaklksekepefgkkrikeaeksnrYlpsfavakklglsplvLskitSsF 87  
                  pieeEFP+g+++ffLGey +Grp+evtgh ++k++vv+++ k+ +e+ef+k +i +ae++n Y+psfavak+l+++pl+LskitSs+
  CCE27717.1  917 PIEEEFPVGTRAFFLGEYGFGRPLEVTGHVNGKAEVVVSIPKQ-REREFAKYIIYQAERNNLYTPSFAVAKQLSIHPLILSKITSSY 1002
                  9***************************************999.******************************************9 PP

>> SH3_12  Xrn1 SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   7.7e-21     2e-17       1      68 []    1160    1230 ..    1160    1230 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 7.7e-21
      SH3_12    1 qqfrLgdrVvyvrdngksVPlGlrGtVVg....rsdtlleVlfDeeflsgtdlggrcskmrgifvpptdlln 68  
                  q f+LgdrV++  d+gk VPl + GtV g    ++  ll+V++D +f+sg++lg+r   +rg +v+ +++ln
  CCE27717.1 1160 QAFALGDRVTFAADSGK-VPLATSGTVAGisrtATALLLDVVWDTTFMSGSTLGDRAPAFRGQTVAASSVLN 1230
                  579*************7.***********9987666999*******************************98 PP

>> Xrn1_D3  Exoribonuclease 1 Domain-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   9.5e-10   2.4e-06       2      67 ..    1084    1150 ..    1083    1153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 9.5e-10
     Xrn1_D3    2 dellkeiaewLKkvk.adlvkVslESdSltkfSiaaiEdyvenYivqevklesKdlagVPrdAvldp 67  
                   e++k++a wLKk+  +++ +V lE + l    + a+    e+  +  + +e K+l+gVPr A+l p
  CCE27717.1 1084 SERVKDMAAWLKKQEmSKFERVPLEAEQLDSEVVMALAAAGEQAHQATQDTEIKKLKGVPRAAILKP 1150
                  699********9985489************************9999999999*************98 PP

>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         5   1.3e+04       1      16 [.     133     148 ..     133     151 .. 0.81
   2 ?   10.8   0.0   0.00014      0.37      19      59 ..     407     449 ..     393     450 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5
                 HHHHHHHHHHHHHHH- CS
         R3H   1 efllrvekklaefvkd 16 
                 ef+ ++ ++l+ fv++
  CCE27717.1 133 EFMAKLSQQLRYFVNK 148
                 6889999999999954 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00014
                 -EEE---.--SHHHHHHHHHHHHSSEEEEEE--S.S-SEEEEE CS
         R3H  19 rslefpp.mssyeRriiHelaeaygleseSvGee.pkRrvvvt 59 
                 ++l +   + +  R+++ ++a+a++l   ++++e  +R++v++
  CCE27717.1 407 EPLDLGYeLKAADRKFVKDIADAMHLDWATKDDEdANRHLVLS 449
                 5566666578899******************97757*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.48
# Mc/sec: 9526.88
//
Query:       CCE27718.1  [L=592]
Description: related to major facilitator MirA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-15   56.8  47.1    1.3e-13   50.7  46.1    3.5  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7  46.1     7e-18   1.3e-13       2     352 ..      62     497 ..      51     497 .. 0.83

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 7e-18
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyal....gaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlq 95 
                 ++a++l+++a  ++  + + ++ +++  s+ +++ ll++ a+    +++ a ++++ + d +Gr   + l+ ll+++g+++ + a ++  + +++ ++ 
  CCE27718.1  62 FIALILTMFADRFVVYTSS-TY-NAYATSAFSQHSLLSAAAVvsdiAQLCAYPIIAKIEDAIGRAEGFALATLLYVVGSVMSA-AcPNAETYVLAGIFN 157
                 6666666666666555555.33.33334444444444444442454889999999***********************55555.4488779******** PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafv.lfllll...................p 173
                 ++g  +++ + ++++a+ ++k +rg+  ++ ++ +++++ + g +++g ++  +gWr+ + i+ai++ +++  l+ lll                    
  CCE27718.1 158 AWGNTGFLLTEQVFVAETVSKANRGLLSAIPTSITGIAVlVAGSIAAGKIVVTAGWRWGYGIFAIMLPVCAApLVTLLLvlqhkamkvygvastksdgK 256
                 ***************************************6777***************************99877777767777765555333333332 PP

       MFS_1 174 eepperkrkspkeee.........................................................................kgtgpaplvpa 199
                               e                                                                          +++++p++p 
  CCE27718.1 257 --------------EdetqhrrvwsrvavyvwveldlpgallliagsalvliplsltgashsdrwhspsliamlvigagclaclviwdGWHAKKPIIP- 340
                 ..............034555577777888**********************************************************99999999999. PP

       MFS_1 200 wkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglalla 295
                 +++l+++     +++a+ll+ f   +   + t++p++lq   g++    a+l+   +++++++++llag ++ r+++r+ +++ +++ l ++   +++ 
  CCE27718.1 341 LSLLRRRT----IVAACLLGLFDALSlslFKTFFPSFLQVAGGYT-PGDASLVNNSVFIAFQVARLLAGVVI-RWSKRPLIWIYIGVPLGMLGQGLMIR 433
                 ******99....88888888544444666****************.5788888999**************99.68999999988888888888888888 PP

       MFS_1 296 vt.......ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +t        + + l+++  l+G++ g+  +++l++++  ++++   +a++lf  + ++gga+g
  CCE27718.1 434 FTnmadgdiANRASLVVARSLMGLARGLHHTAALVAVQCDVSNQDLSMATALFLALVTVGGAIG 497
                 886676665555555556666*****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4024.96
//
Query:       CCE27719.1  [L=438]
Description: probable HAT2-subunit of the major yeast histone acetyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-26   91.6   0.3    2.4e-25   88.5   0.2    2.5  2  CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CA
    1.8e-24   85.5   6.7    1.8e-05   25.4   0.1    5.8  6  WD40         WD domain, G-beta repeat
    5.8e-05   23.3   0.5      0.035   14.4   0.1    3.6  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.23   11.1   1.4       0.41   10.3   1.4    1.4  1  BDHCT_assoc  BDHCT-box associated domain on Bloom syndrome pr


Domain annotation for each model (and alignments):
>> CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CAF1 complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.2   5.5e-29   2.4e-25       1      66 [.      29      98 ..      29      99 .. 0.94
   2 ?   -0.6   0.0      0.37   1.7e+03      45      63 ..     404     419 ..     394     421 .. 0.68

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 5.5e-29
                 HHHHHHHHHHHHHEEEEEEEE-SS--S-EEE-S-B--...-.EEEEEEEE----TTSS-EEEEEEEEEEE CS
  CAF1C_H4-bd  1 eeylewkknapfLYdmlhshslewPsLsfdwlPdtvs...s.lskqrllvGtqtsgkeqnylyvakvslp 66
                 eey+ wkkn pfLYdm++ ++l+wP+L+++w+Pd +    + + ++rll+Gt+ts+++ n+l++a+v++p
   CCE27719.1 29 EEYKTWKKNSPFLYDMVLGTALTWPTLTVQWFPDVKEpegKnYYMHRLLLGTHTSDGTSNFLQIADVQIP 98
                 7********************************954467878**************************99 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.37
                  EE----TTSS-EEEEEEEE CS
  CAF1C_H4-bd  45 lvGtqtsgkeqnylyvakv 63 
                  lv++     e+n l+++kv
   CCE27719.1 404 LVASA---AEDNMLQIWKV 419
                  55544...56999999998 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4   6.3e+03      13      38 .]     141     167 ..     133     167 .. 0.59
   2 !   14.1   0.1   1.5e-05     0.069       9      38 .]     189     220 ..     182     220 .. 0.77
   3 ?    1.9   0.2      0.11   4.7e+02       5      36 ..     235     268 ..     231     270 .. 0.68
   4 !   23.5   0.0   1.6e-08   7.3e-05       8      38 .]     285     317 ..     276     317 .. 0.89
   5 !   25.4   0.1     4e-09   1.8e-05       2      38 .]     323     361 ..     322     361 .. 0.91
   6 !   18.9   0.0   4.7e-07    0.0021       8      38 .]     386     418 ..     380     418 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
                 EEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40  13 vtslafspdgawlasG.sdDgtvriWd 38 
                 v+  +++p ++ +++  + Dg++ ++d
  CCE27719.1 141 VNKARYQPQNPDIIATlCVDGKLLVFD 167
                 555554444444444446799998887 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.5e-05
                 SSSS..EEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   9 GHss..vtslafspdgaw.lasGsdDgtvriWd 38 
                 GH+s    +l++sp+ a  lasGs+D+t  +Wd
  CCE27719.1 189 GHKSegF-ALDWSPHDAGcLASGSEDRTMCLWD 220
                 7733244.7888888888789***********9 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.11
                 EEEESSSS.EEEEEEETTSSEEEEE..ETTSEEEE CS
        WD40   5 rtltGHss.vtslafspdgawlasG..sdDgtvri 36 
                 r +t H+  v+++++++ ++ ++ G  sdD t+ i
  CCE27719.1 235 RRYTHHTQvVNDVQYHHISKNFI-GtvSDDLTLQI 268
                 5678786657***9777777766.54477877655 PP

  == domain 4  score: 23.5 bits;  conditional E-value: 1.6e-08
                 ESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                  GH + +++laf+p++  l+ ++s D+tv iWd
  CCE27719.1 285 GGHlDAINALAFNPNSEVLVaTASADKTVGIWD 317
                 59*999************8647899*******9 PP

  == domain 5  score: 25.4 bits;  conditional E-value: 4e-09
                 EEEEEEESSSS.EEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   2 qclrtltGHss.vtslafspdgawla.sGsdDgtvriWd 38 
                 ++++tl+GHs+ vts+ ++p  a ++ sG++D+ + +Wd
  CCE27719.1 323 EKVHTLEGHSDaVTSIYWHPTEAGILgSGGYDRRINFWD 361
                 689******555*************989999*******9 PP

  == domain 6  score: 18.9 bits;  conditional E-value: 4.7e-07
                 ESS.SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasG.sdDgtvriWd 38 
                  GH ++  +++++p+ +wl+++  +D+ + iW+
  CCE27719.1 386 GGHtNHLADFSWNPNEPWLVASaAEDNMLQIWK 418
                 69*999************9754379*******6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.12   5.2e+02       8      50 ..     152     194 ..     144     232 .. 0.53
   2 !   14.4   0.1   7.9e-06     0.035      34      90 ..     284     341 ..     253     343 .. 0.80
   3 ?    3.4   0.0     0.021        96      38      68 ..     389     420 ..     381     424 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.12
  ANAPC4_WD40   8 DLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdg 50 
                  D+iA    dg+llvf    + +  ++  k + +v+ L  k +g
   CCE27719.1 152 DIIATLCVDGKLLVFDRTKHPLQPASLGKVNAQVELLGHKSEG 194
                  8888888888888775555444444333333333333333333 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 7.9e-06
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklL.avaysdgevrlldaes.gkvvhslsvksekavtclgWg 90 
                  + ++   +++La++p+ ++L a a +d +v + d  +  + vh+l+ +s+ avt++ W 
   CCE27719.1 284 NGGHLDAINALAFNPNSEVLvATASADKTVGIWDLRNvREKVHTLEGHSD-AVTSIYWH 341
                  55666789********999834678899*******983578999999999.6******6 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.021
  ANAPC4_WD40  38 dsevrsLaWkpdgklL.avaysdgevrlldae 68 
                   ++  +++W+p++  L a a +d+ +++ ++ 
   CCE27719.1 389 TNHLADFSWNPNEPWLvASAAEDNMLQIWKVA 420
                  56677899*****9772567889999998875 PP

>> BDHCT_assoc  BDHCT-box associated domain on Bloom syndrome protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.4   9.1e-05      0.41     124     147 ..       2      27 ..       1      42 [. 0.72

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.1e-05
  BDHCT_assoc 124 qasediDnFdiDdf.DDDdd.wenim 147
                   a++d+D+Fd+D + D+D++  e i 
   CCE27719.1   2 AAAQDVDDFDVDMMqDEDEEqTERII 27 
                  589********999555666345443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3176.15
//
Query:       CCE27720.1  [L=779]
Description: uncharacterized protein CPUR_01194 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.25    9.6  11.3       0.38    9.0  11.3    1.2  1  CDC45        CDC45-like protein
       0.48    9.8  18.6        1.1    8.6  18.6    1.5  1  SDA1         SDA1
        1.1    9.0   8.9        2.7    7.8   8.9    1.6  1  Pox_Ag35     Pox virus Ag35 surface protein
        4.8    7.2   9.2         30    4.6   7.9    2.6  2  RXT2_N       RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  11.3   8.6e-05      0.38     122     211 ..     634     725 ..     579     768 .. 0.46

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 8.6e-05
       CDC45 122 ayealeeeeesdeede.eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee.......sddddersrkrrrsepsakklrrqlkkerrk 211
                 a+ + + e++++e++  +eeee+d+d+e e+++++d++++   +e+++ +  +ksd +e+       + d  ++   r  se    + ++++ k+rr+
  CCE27720.1 634 AVGSSSTEQDVRESEGeSEEEEEDEDDELESDDDDDDSETIILSEQHSPQ--EKSDGSEDyemeaghDGDGTRSGTARYGSE----QDEEERAKARRS 725
                 33333333333322222222222222222222222222222222222222..334444443333442111111122222222....222223333333 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  18.6   0.00025       1.1      98     192 ..     612     723 ..     577     748 .. 0.41

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00025
        SDA1  98 eddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeee...........eeeeeeeeeeeeeekekkkk..... 180
                 e+ + dw++e    +  +  +    v s++ e+++ + se e+eeeee+e++e +++++++++           +      e+++ +e+          
  CCE27720.1 612 EEIHGDWDWEAWLAE--QRGNTHPAVGSSSTEQDVRE-SEGESEEEEEDEDDELESDDDDDDSetiilseqhspQ------EKSDGSED----Yemeag 697
                 333444444442222..11111223333332222222.2222211111111111111111111123332222210......11111111....111223 PP

        SDA1 181 ..............kakeaseeekkk 192
                               ++++++e++k++
  CCE27720.1 698 hdgdgtrsgtarygSEQDEEERAKAR 723
                 44444444444444333333333333 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   8.9   0.00059       2.7      63     120 ..     633     689 ..     600     696 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00059
    Pox_Ag35  63 kpakkekkkkeeekeeaaeeeeledseedeenendedeseesvqaeeeksnestedda 120
                 +++ +++++++ +++e++ e e e++e+de++++d+d+ +e+   +e++s +++ d  
  CCE27720.1 633 PAVGSSSTEQDVRESEGESE-EEEEDEDDELESDDDDDDSETIILSEQHSPQEKSDGS 689
                 34445556666666666655.5677888899999999999999999988888855543 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.12   5.3e+02     107     137 ..     179     209 ..     171     216 .. 0.93
   2 ?    4.6   7.9    0.0067        30      45      83 ..     638     678 ..     606     697 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.12
      RXT2_N 107 psdlithpslsrtykskaLteLalqlielie 137
                 p+dli+  + srt+++ + ++L ++++++ie
  CCE27720.1 179 PEDLISLYATSRTFHEAINEHLLSSIVTWIE 209
                 89*********************99999998 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0067
      RXT2_N  45 npierskrkkkekekeekeeeeedeegdeededdddee.....e 83 
                 +++e++    +e+e e++eeee+++++ e+d+dddd+e     e
  CCE27720.1 638 SSTEQDV---RESEGESEEEEEDEDDELESDDDDDDSEtiilsE 678
                 4444422...2222222233333333333333333333344331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.42
# Mc/sec: 5630.94
//
Query:       CCE27721.1  [L=634]
Description: related to centractin (ARP1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-18   65.5  13.0    6.2e-11   41.4   1.5    2.3  2  zf-RanBP    Zn-finger in Ran binding protein and others
    2.7e-08   33.5   0.0    6.5e-08   32.3   0.0    1.7  1  RRM_1       RNA recognition motif. (a.k.a. RRM, RBD, or RNP d
    7.3e-07   29.9   0.0    1.1e-06   29.3   0.0    1.2  1  RNase_T     Exonuclease


Domain annotation for each model (and alignments):
>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   1.5     1e-14   6.2e-11       1      28 [.     352     379 ..     352     381 .. 0.95
   2 !   29.2   4.3   6.7e-11     4e-07       1      28 [.     433     462 ..     433     464 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1e-14
                 GSSSEE-SSS--EEESSSSB-TTT--BT CS
    zf-RanBP   1 regdWdCskClvqNfawstkCvaCqapk 28 
                 r gdW+C++C+++Nf+ +t+C++C++p+
  CCE27721.1 352 RPGDWTCPSCGFSNFQRRTACFRCSFPA 379
                 78***********************996 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 6.7e-11
                 GSSSEE-..SSS--EEESSSSB-TTT--BT CS
    zf-RanBP   1 regdWdC..skClvqNfawstkCvaCqapk 28 
                 r+gdW+C   +C+++Nfa+++ C++C+a++
  CCE27721.1 433 RAGDWKCgnEVCGYHNFAKNVCCLRCGASR 462
                 89**************************98 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.1e-11   6.5e-08       3      69 ..     257     324 ..     255     325 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.1e-11
                 EESETTTSSHHHHHHHHHTTSCE.EEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   3 VgnLppdvteeeLkelFskfGpi.ksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +++Lp+d+t++eL+ +F +fG+    +   r+ e++k++g++f  F s+e+A++ l  +ng+ l+ + +
  CCE27721.1 257 MSGLPHDTTQSELESWFTQFGGRpIAFWTLRTpEQHKPTGTGFAVFSSHEEAAESLC-MNGRALNEKAI 324
                 689****************9987799999999************************9.*****999987 PP

>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.8e-10   1.1e-06       7     113 ..      21     135 ..      15     185 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.8e-10
                 ESSSTT.....CTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETT.TCEEEESS CS
     RNase_T   7 ttglda.....kekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahn.aafdvgfl 99 
                 tt+ ++     k   e+ie++ i +d++  e++ + +++vkp++   +t+ ct++t  t e++++a++fk+++++f+ +   +  l  +n  +++v+  
  CCE27721.1  21 TTCDEHgvyvtKDSAEVIELGWILLDANSLEEITHESVLVKPVNT-PITPLCTSLTTLTWEHVRNAGTFKDAISRFDTFAT-E-YLTSKNlDFVFVTLD 116
                 777777777776689***************99999*********8.9********************************99.4.677778788888888 PP

                 HHHHHHHHHHHHH.....H CS
     RNase_T 100 raadkrilkkevp.....k 113
                  ++++  l +e+       
  CCE27721.1 117 AWDLRVQLPREARdkavvL 135
                 8888877777665555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4370.47
//
Query:       CCE27722.1  [L=96]
Description: uncharacterized protein CPUR_01196 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-21   73.9   7.9      1e-20   73.7   7.9    1.1  1  Pmp3      Proteolipid membrane potential modulator


Domain annotation for each model (and alignments):
>> Pmp3  Proteolipid membrane potential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   7.9   5.6e-25     1e-20       2      49 .]       7      54 ..       6      54 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 5.6e-25
        Pmp3  2 illillaiilPPlaValksGcsadllinilLtllgylPgviHAfyiiy 49
                +l +++ i++PPl+V+l +Gc++dl+ini+LtllgylPg++HAfy+ y
  CCE27722.1  7 VLTVIITIFFPPLGVWLLAGCGMDLFINICLTLLGYLPGHVHAFYLEY 54
                6889*****************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 710.21
//
Query:       CCE27723.1  [L=492]
Description: uncharacterized protein CPUR_01197 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3478.23
//
Query:       CCE27724.1  [L=750]
Description: related to cell division cycle 2-related protein kinase 7 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-70  235.3   0.0    1.1e-69  234.8   0.0    1.2  1  Pkinase        Protein kinase domain
    3.4e-36  124.9   0.0    8.6e-36  123.5   0.0    1.6  1  Pkinase_Tyr    Protein tyrosine kinase
      0.002   17.5   0.0     0.0035   16.7   0.0    1.3  1  Kinase-like    Kinase-like
  ------ inclusion threshold ------
        0.1   11.5   0.0       0.18   10.7   0.0    1.3  1  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.8   0.0   2.4e-73   1.1e-69       5     264 .]     395     676 ..     392     676 .. 0.95

  Alignments for each domain:
  == domain 1  score: 234.8 bits;  conditional E-value: 2.4e-73
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.HHSS--HHHHHH CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle.rkgslseeeakk 102
                 + +G+G++GkV+k+++  t++ vA+K+i+ e +++    +++rEik+l++l+hpniv+l ev+ ek++ ++v+ey++++ l+ ll+    +l++++ k+
  CCE27724.1 395 SVVGSGTYGKVFKGLNVYTKDLVALKRIRMEGERDGFPVTAVREIKLLQSLRHPNIVNLQEVMVEKNDCFMVFEYLSHD-LTGLLNhPTFKLEPAQRKD 492
                 689**************************************************************************77.99999955667******** PP

                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkppfs 198
                 +a+q++egl+ylH +g++HrD+K +NiL++++g+lK++DFGla+ + ++++  +t++v+t +Y++PE+l +e++y+++vDvWs++++++e+++++ +f+
  CCE27724.1 493 LARQLFEGLDYLHVRGVLHRDIKAANILVSSTGVLKLADFGLARFYAKRHQrdYTNRVITIWYRSPELLlGETQYTASVDVWSAACVMVEIFNRTAIFP 591
                 **********************************************9999999****************9***************************** PP

                 TSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS........................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 199 gekgkekvekeldqlekilkilg.etkeklpeasei........................seeakdllkkllkkdpkkRltaeellqhpyl 264
                    g+    +el ql ki+ ilg ++++++p   ++                         + a +ll+ ++++dp kR+ta+e+lqh y+
  CCE27724.1 592 ---GDG---TELSQLDKIYSILGtPSRQDWPGLVDMawfellrptvkrkstlaerfgdklTPAAFELLSAMFQYDPAKRPTAAEVLQHAYF 676
                 ...554...3567777799***988889999999999****************************************************98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.0   1.9e-39   8.6e-36       5     255 ..     395     670 ..     393     674 .. 0.79

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 1.9e-39
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSB CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekeklt 101
                  + +G+G++GkV++g        ++  Va+K ++ e +++      ++e+k++++l+hpniv+l  v+++++  ++v+ey+++ dL   L++  + kl+
   CCE27724.1 395 SVVGSGTYGKVFKGLNV----YTKDLVALKRIRMEGERDGfPVTAVREIKLLQSLRHPNIVNLQEVMVEKNDCFMVFEYLSH-DLTGLLNHP-TFKLE 486
                  579***********998....78899******87666665488999**********************************98.9***99998.***** PP

                  HHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHH.HSEEEHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 102 lkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslk.ekkftsksDvWsfGvllwEi 198
                    +  ++a q+ +G++yL+ + ++Hrd+ a N+L+s++ v k++DfGLar    + ++++ +++ + + + +pE l  e+++t + DvWs + ++ Ei
   CCE27724.1 487 PAQRKDLARQLFEGLDYLHVRGVLHRDIKAANILVSSTGVLKLADFGLARFY-AKRHQRDYTNRVITIWYRSPELLLgETQYTASVDVWSAACVMVEI 583
                  **************************************************88.778888899999999999***9761566***************** PP

                  HTTSSGT...........................TTTSHHHHHHHHH.HTTEES-BB..TTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 199 ftlgesp...........................ypglkneevlekl.kegkrlekp..ekcpeelyelmkkcweedpeeRptfsel 255
                  f+  +                             + ++   e+l+   k++  l++   +k +++  el++  +++dp++Rpt +e+
   CCE27724.1 584 FNRTAIFpgdgtelsqldkiysilgtpsrqdwpgLVDMAWFELLRPTvKRKSTLAERfgDKLTPAAFELLSAMFQYDPAKRPTAAEV 670
                  *98774336666666666666666666666643333333333333222333333332224555666666666666666666666655 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.7e-07    0.0035     137     243 ..     480     583 ..     437     599 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.7e-07
  Kinase-like 137 t.hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve....kgfaPpEllgsrggytrknktkmth 229
                     +kle + r+ l  ql     +L+ +g++h ++++ n+l    g l+l +f+  + + ++ +   ++      +  pEll          +t++t 
   CCE27724.1 480 HpTFKLEPAQRKDLARQLFEGLDYLHVRGVLHRDIKAANILVSSTGVLKLADFGLARFYAKRHQRDYTNrvitIWYRSPELLLG--------ETQYTA 569
                  347899999999999999999********************************9766555555433333233456888888765........578888 PP

  Kinase-like 230 kldaWqlGlviyri 243
                  ++d+W    v+  i
   CCE27724.1 570 SVDVWSAACVMVEI 583
                  88888876666665 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.1e-05      0.18     230     266 ..     511     547 ..     509     568 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.1e-05
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsRlessegkvlyt 266
                    HRd++  niLv +++   l d+ l+R+ +++++  yt
     CCE27724.1 511 HRDIKAANILVSSTGVLKLADFGLARFYAKRHQRDYT 547
                    ***************************9665554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 4795.05
//
Query:       CCE27725.1  [L=179]
Description: uncharacterized protein CPUR_01199 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1356.58
//
Query:       CCE27726.1  [L=423]
Description: related to P.glauca late embryogenesis abundant protein and YBR177c and YPL095c [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-11   44.3   0.1    4.3e-09   36.4   0.0    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
      8e-11   41.7   0.0    3.2e-10   39.7   0.0    1.9  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   4.8e-13   4.3e-09       1      94 [.     122     216 ..     122     244 .. 0.84
   2 !    6.0   0.0   0.00092       8.3     206     250 ..     301     361 ..     259     366 .. 0.68

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 4.8e-13
                    SEEEEE-STTT.CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpg.ssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey 94 
                    p lv+lhGl g s++++ ++ + p L + g++v+++++rG+++S+  +    +   t++++  +++++  +++++l  +G+S+G  + ++y+ e 
     CCE27726.1 122 PMLVVLHGLSGgSHEIYLRHTITPLLGDGGWEVCVVNSRGCARSKLTSGVLYNARATWDLRQTVKWLKKTFPNRPLFGLGFSLGANMLTNYCGEE 216
                    679********555558888888888888***************87777333555************************************9887 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.00092
                    C...............THHHHSEEEEEEETTCSSSCHHHHHHHHHC.HTSEEEEEEETCSS CS
  Abhydrolase_1 206 e...............lknvlaptlvisgtsDplvppkaledlaql.lpkkrlvvisdagH 250
                                    + n+ +p + +++t+Dp++ ++al + + +  p+  l++ s +gH
     CCE27726.1 301 YptetayyrdassvdaVLNIRIPFVALHATDDPIAVHQALPYEEFKqNPNTVLITTSLGGH 361
                    0444555555555444556666***************999877766566666666666666 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   3.5e-14   3.2e-10       4     209 ..     121     339 ..     118     367 .. 0.66

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 3.5e-14
  Hydrolase_4   4 kavvvlvHGlaehsgr.y.ae.laeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllryp 98 
                  k  +v++HGl   s   y  + ++  L + G++v+ ++ rG  rs+   g v    + + Dl++ v+ +k++ p++plf lG S+G+ + ++y+ ++ 
   CCE27726.1 121 KPMLVVLHGLSGGSHEiYlRHtITPLLGDGGWEVCVVNSRGCARSKLTSG-VLYNARATWDLRQTVKWLKKTFPNRPLFGLGFSLGANMLTNYCGEEG 217
                  6789999998654443132445899999*****************77777.556677889**********************************5555 PP

  Hydrolase_4  99 d..kvaglilsaPalkikakl...k.appllklllkllgkllpklqv.......snnlkadslsrdpevvaayeadplv.hgkitvrlllelldamkr 182
                  +   ++g+++++  ++++ +    +     +++ l+++g +l++l +       +++++     ++   + +++++  + +++  +++++  ++  ++
   CCE27726.1 218 EdcLLKGAVVCSNPFNLEVSSkmlQsSFIGKEVYLRVMGMALKSLILthkdtlkKHSKLDLPAIEKVTYIHEFDREVQCpSWGYPTETAY--YRD-AS 312
                  534678666666666666554223111223445899999999999996544333121111222222223333333333333333333333..222.23 PP

  Hydrolase_4 183 leeraakitlPllllhGeaDkvvdpea 209
                   ++ + +i++P+  lh+++D++  ++a
   CCE27726.1 313 SVDAVLNIRIPFVALHATDDPIAVHQA 339
                  344445578999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3333.81
//
Query:       CCE27727.1  [L=203]
Description: uncharacterized protein CPUR_01201 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2325  (0.129678); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1485.15
//
Query:       CCE27728.1  [L=114]
Description: uncharacterized protein CPUR_01202 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 851.69
//
Query:       CCE27729.1  [L=355]
Description: related to translation initiation factor 4e [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-52  176.2   0.0    5.8e-52  175.7   0.0    1.3  1  IF4E      Eukaryotic initiation factor 4E


Domain annotation for each model (and alignments):
>> IF4E  Eukaryotic initiation factor 4E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.7   0.0   3.3e-56   5.8e-52       1     159 []     156     313 ..     156     313 .. 0.94

  Alignments for each domain:
  == domain 1  score: 175.7 bits;  conditional E-value: 3.3e-56
                 EEEEEEEEEEE-TTT.--SS-....SGGG-EEEEEEEEHHHHHHHHHHS--GGGB-SSEEEEEEETT--SSTTSHHHHS-EEEEEEE-----HHHHHHH CS
        IF4E   1 pLkskWtlwfdsksk.sksen....yeeslkkvatfstveeFwslynnlkkpsklkvksdyhlFkkgikPmWEdpankkGGkwvirlkkkekldrlWee 94 
                 pLk+ W +w+  +++ sk+ +    ye++l+ +a++++ e+Fw +y++lk+ps l+v sdyh+Fkk+i+P+WEd++n+kGGkwv+rlkk +++dr+We+
  CCE27729.1 156 PLKDAWSFWY--RPPiSKA-HgfieYENTLHGIANVRSAEDFWDIYSHLKRPSLLPVVSDYHFFKKDIRPIWEDDENRKGGKWVVRLKK-GVADRYWED 250
                 79********..4442233.23666***************************************************************9.99******* PP

                 HHHHHHTT-SS--.-SEEEEEEEE-SSEEEEEEEES-TT-HHHHHHHHHHHHHT--------EEE CS
        IF4E  95 lllaligeqleeeedeicGvvvsvRkkedrisiWtrdasdeekvekigeklkevlelpeekkley 159
                 lll+lig+q+ ++++e+ G+v+svR+ ed++siWtr+     +v ki+e++k+vl++p+++++e+
  CCE27729.1 251 LLLCLIGDQFGDAGEEVSGAVLSVRNGEDILSIWTRTV--GGRVLKIRETMKHVLNFPPNTRVEF 313
                 **************************************..579*****************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2344.58
//
Query:       CCE27730.1  [L=556]
Description: related to snRNP-associated protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-26   92.8   0.0    3.6e-26   92.2   0.0    1.2  1  UCH       Ubiquitin carboxyl-terminal hydrolase
    3.3e-13   49.7   0.3    7.3e-13   48.7   0.3    1.6  1  zf-UBP    Zn-finger in ubiquitin-hydrolases and other protein
    0.00059   19.5   0.1     0.0091   15.6   0.1    2.3  1  UCH_1     Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
      0.053   13.9   0.1       0.12   12.8   0.1    1.5  1  DUF1064   Protein of unknown function (DUF1064)
      0.094   12.5   0.8       0.28   11.0   0.8    1.8  1  UVR       UvrB/uvrC motif


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.0     1e-29   3.6e-26       1     245 [.     223     537 ..     223     549 .. 0.86

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 1e-29
                 -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH..SH-CCEE--HHHHHHHH.HHSGGGTSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell..kskskavsPkklkktls.klaksfsgyk 96 
                 +G++N+  + y+n ++Q+L+++p+lr+y+l       e+  +k++          el+k+ + lf++++  +  +++vsP++l++ ++ +++k+f   +
  CCE27730.1 223 VGMNNIKENDYLNVIVQALSHVPPLRNYFLL------EDFSAKTS----------ELVKRNAILFRKIWnpRAFKAHVSPHELLQEIAlRSNKRFTLTN 305
                 699**************************99......23333332..........49************9966789******998877356777***** PP

                 TCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE.................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................. RF
         UCH  97 qqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks.................................................. 145
                 q D  Efl+  L++lh  l          +++k  +s+i++ f+g+lk                                                   
  CCE27730.1 306 QSDPVEFLSWFLNNLHLGLGG--------SKTKPGSSMIQRTFQGKLKVesqaitaradasdrlrfeeaaevkvdivrfllltldlpatplfqdelekn 396
                 *********************........899****************999************************************************ PP

                 ............................EEEEEEB-SEEEEEEESEEETEE.EEE--SEEB--S.EEE-GGGBSS-BTTS-TCS-B.EEEEEEEEEES. CS
                 ............................xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx. RF
         UCH 146 ............................klklkrlPeiLiihlkRfsynss.ksKlntkvefpe.eldlssylaeekkkkteekkk.YeLiavvvHsG. 212
                                                l+ lP++Li+h+kRfs n+   +++ t v+f   +ld+s+y++ + ++  +  ++ Y+L+a vvH   
  CCE27730.1 397 iipqvplttilskydgrsaqehhaqrkrYRLLHPLPPFLILHVKRFSQNKFvTERNPTIVTFDArNLDMSPYVEPNPAEWPPAAPIwYDLVANVVHEAv 495
                 **************************997889******************************955********97766644433334**********95 PP

                 C.....TTSEEEEE..........EEECTTTTEEEEEETTEEEEE-HH CS
                 x.....xxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 213 s.....lssGHYva..........yiknekngkWykydDetvkevkee 245
                       +                  +++++ g+W+ ++D  v++v++e
  CCE27730.1 496 RtredvA------DsgderktwkaQVRDRRTGEWVSCQDLFVEKVQSE 537
                 4344441......13333333333555677777999999999999965 PP

>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.3     2e-16   7.3e-13       1      63 [.     107     168 ..     107     169 .. 0.95

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 2e-16
                 -TTTH--.SSEEEETTT--EEE-TTTT-HHHHHHHHH---EEEETTT--EEETTTTEEBE-GC CS
      zf-UBP   1 CseCnsenknlWlCLkCghvgCgrksnghalkHyeetrHplavdlstlsvycyscddevedke 63 
                 Cs++ s+  n+++CL Cg++++gr  ++ha+ H+ +++H+++++l+t++vy +++ +ev++k+
  CCE27730.1 107 CSVSLSN-INVYACLVCGKYFQGRGTKSHAYFHALSEDHHVFINLETQKVYVLPEGYEVKSKS 168
                 8899977.9**************************************************9875 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.5e-06    0.0091       1     103 [.     223     337 ..     223     501 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.5e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplr.nlalshlakeckkehcLlcElgflfdmldkak..glncqasnFlralssipeasalglileeeeete..... 91 
                 +G+ n  +n YlN ++Q+l ++pplr  ++l+ +    +k + L+     lf+   + +  ++++  +++l+ +   + ++++ l  +++   e     
  CCE27730.1 223 VGMNNIKENDYLNVIVQALSHVPPLRnYFLLEDF---SAKTSELVKRNAILFRKIWNPRafKAHVSPHELLQEIALRS-NKRFTLTNQSD-PVEflswf 316
                 799999********************77788888...88888888888888876665555566777777777777333.66666653332.11134555 PP

                 .........xxxxxxxxxxxx RF
       UCH_1  92 .........kssaislssliq 103
                           s+++  ss+iq
  CCE27730.1 317 lnnlhlglgGSKTKPGSSMIQ 337
                 555555555444444455554 PP

>> DUF1064  Protein of unknown function (DUF1064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   3.2e-05      0.12      33      72 ..     143     181 ..     124     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.2e-05
     DUF1064  33 aagkilkleLqpkfeLqekfkknGkkyrkikYvaDFliyk 72 
                  +   ++le q++++L e ++ + k  + ikYv+D   y+
  CCE27730.1 143 DHHVFINLETQKVYVLPEGYEVKSKSLEDIKYVSDPR-YT 181
                 4455789***************************977.54 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   7.9e-05      0.28      13      30 ..     356     373 ..     349     376 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.9e-05
         UVR  13 eAaenedFEkAAklRDqi 30 
                  A+++++FE+AA+++  i
  CCE27730.1 356 DASDRLRFEEAAEVKVDI 373
                 79***********99665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4125.18
//
Query:       CCE27731.1  [L=916]
Description: related to UTP13-U3 snoRNP protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-51  172.0   0.1    9.8e-51  171.4   0.1    1.3  1  Utp13          Utp13 specific WD40 associated domain
    1.9e-49  164.6  22.6      2e-05   25.2   0.1   11.6 10  WD40           WD domain, G-beta repeat
    4.8e-12   46.0   6.5      0.054   13.8   0.0    8.6  9  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    9.5e-06   24.5   3.5        1.1    7.8   0.1    5.7  6  Nup160         Nucleoporin Nup120/160
    0.00056   18.8   5.4        2.3    6.9   0.0    5.4  5  Nucleoporin_N  Nup133 N terminal like
  ------ inclusion threshold ------
       0.11   11.8   0.0         98    2.1   0.0    4.0  5  WD40_like      WD40-like domain


Domain annotation for each model (and alignments):
>> Utp13  Utp13 specific WD40 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.4   0.1   3.3e-54   9.8e-51       1     142 []     743     892 ..     743     892 .. 0.99

  Alignments for each domain:
  == domain 1  score: 171.4 bits;  conditional E-value: 3.3e-54
                 -HHHHHHHHCCHHHHHHHHHHHSSSTHHHHHHHHHHHS-SS--STSSSSSHHHHHHHHC--HHHHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHS-HH CS
       Utp13   1 eqelqnllrkkdyreAiaLAlkldqpkrllkllkevleseeeeeesitgskevdevlkslskeqleklLkyirdWntnartsevAqrvLnailkslsae 99 
                 +qel+n++ ++ yreAi+LAl+l++p+rll+l+++v++s++ +++s  g+k+vdevl sls+eq+  lL ++rdWntnart++vAqr+L ++++s++a+
  CCE27731.1 743 QQELENHIYAGSYREAITLALQLNHPGRLLNLFTTVVTSNSPDQGSLCGLKAVDEVLGSLSDEQIFLLLLRLRDWNTNARTAPVAQRILWTLVRSYPAS 841
                 79************************************************************************************************* PP

                 HHHS--........-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXX CS
       Utp13 100 ellele........glkellealipYteRHlkRldrlveesylldytlqem 142
                 ++++l         +l++++++l  YteRH+kR+++lv+esyl++ytlqem
  CCE27731.1 842 KFSNLTvrgargqkSLNDVVQGLRVYTERHYKRMEELVDESYLMEYTLQEM 892
                 **************************************************9 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.6e-09   2.9e-05       3      38 .]     103     139 ..     101     139 .. 0.92
   2 !   12.2   0.0   8.8e-05      0.26      24      38 .]     201     216 ..     145     216 .. 0.80
   3 !   18.1   0.1   1.2e-06    0.0035       2      38 .]     221     258 ..     220     258 .. 0.95
   4 !    5.7   0.0    0.0097        29      18      38 .]     279     299 ..     264     299 .. 0.73
   5 !   20.6   0.5     2e-07    0.0006       4      37 ..     426     460 ..     423     461 .. 0.86
   6 !    9.1   0.0   0.00082       2.5       6      38 .]     474     523 ..     469     523 .. 0.65
   7 !   25.2   0.1   6.9e-09     2e-05       6      38 .]     538     573 ..     533     573 .. 0.87
   8 !   16.9   0.1   2.8e-06    0.0084       2      38 .]     578     629 ..     577     629 .. 0.74
   9 !   19.6   0.0   4.2e-07    0.0012       2      38 .]     634     680 ..     633     680 .. 0.84
  10 !   17.7   0.2   1.6e-06    0.0049       6      37 ..     689     721 ..     684     722 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.6e-09
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++rtl+ H ++v  la+++ +++la+G+ Dgt+++Wd
  CCE27731.1 103 LVRTLKPHgTPVVVLAVDRTSTLLATGGTDGTIKVWD 139
                 789*****888888889**********99*******9 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 8.8e-05
                 E.EEEEETTSEEEEEE CS
        WD40  24 w.lasGsdDgtvriWd 38 
                 + lasGs Dg++r+Wd
  CCE27731.1 201 FrLASGSQDGKLRVWD 216
                 2689***********9 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 1.2e-06
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  c+  l+ H s++  +++sp+++ l+s+s+D+t+  Wd
  CCE27731.1 221 ACVANLESHvSDIQKIDYSPEQHALVSASRDKTIIWWD 258
                 69999****999*************************9 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0097
                 EETTSSEEEEEETTSEEEEEE CS
        WD40  18 fspdgawlasGsdDgtvriWd 38 
                 f ++g++ +s++ +g +riWd
  CCE27731.1 279 FFDEGRLTFSAGANGCLRIWD 299
                 6666777445555*******9 PP

  == domain 5  score: 20.6 bits;  conditional E-value: 2e-07
                 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgawlasGsdDgtvriW 37 
                 +  l+GH + v sl+++ +g+w+a+G +D++ r+W
  CCE27731.1 426 VALLRGHEDiVISLDVDWSGHWIATGAKDNNARLW 460
                 56689**55468*********************** PP

  == domain 6  score: 9.1 bits;  conditional E-value: 0.00082
                 EEESS.SSEEEEE................EETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtsla................fspdgawlasGsdDgtvriWd 38 
                 t++GH  s   +a                  +  a+l++Gs D+t++ Wd
  CCE27731.1 474 TFSGHaESLGTVAlpklvpaegsaartspLEHPPAFLITGSQDQTIKKWD 523
                 66666555555555555555555555555445556799***********9 PP

  == domain 7  score: 25.2 bits;  conditional E-value: 6.9e-09
                 EEE..SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tlt..GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++t  +H ++++++  +++g+++as+s D+tv+iW+
  CCE27731.1 538 HFTrkAHeKDINAINIHHSGSLFASASQDKTVKIWS 573
                 554449*9***************************5 PP

  == domain 8  score: 16.9 bits;  conditional E-value: 2.8e-06
                 EEEEEEESS.SSEEEEEEETTSSE....................EEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw....................lasGsdDgtvriWd 38 
                 + +++l+GH  +v+s++      +                    +++Gs D++v++W+
  CCE27731.1 578 EVQGILRGHkRGVWSVQ------FspaqlpaiqgddgpvtgkgvILTGSGDKSVKLWS 629
                 67899****655****7......333333466666666688887779*88*******5 PP

  == domain 9  score: 19.6 bits;  conditional E-value: 4.2e-07
                 EEEEEEESS.SSEEEEEEETTSSE................EEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw................lasGsdDgtvriWd 38 
                 +c+rt++GH +sv  +      aw                +++++ Dg v++Wd
  CCE27731.1 634 TCIRTFEGHsNSVLKV------AWlntpakqeqskrpvqfVTAAG-DGLVKVWD 680
                 69*******999****......66666666999999999566678.*******9 PP

  == domain 10  score: 17.7 bits;  conditional E-value: 1.6e-06
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 tl+ H + v+++a++p+ + +asGs D tv +W
  CCE27731.1 689 TLDNHeDRVWAVAVHPETNTIASGSGDSTVTFW 721
                 67889677****************99*****99 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.91   2.7e+03      11      67 ..      36      90 ..      30     109 .. 0.72
   2 !    9.2   0.0   0.00048       1.4      34      89 ..     107     161 ..      71     164 .. 0.77
   3 !    7.0   0.1    0.0024       7.1      18      78 ..     211     270 ..     203     279 .. 0.68
   4 ?    1.6   0.0      0.12   3.4e+02      47      82 ..     280     315 ..     271     339 .. 0.81
   5 ?    1.5   0.0      0.13   3.7e+02      39      72 ..     368     402 ..     331     413 .. 0.79
   6 ?    0.6   0.1      0.24   7.3e+02      40      68 ..     435     463 ..     423     474 .. 0.80
   7 !   13.8   0.0   1.8e-05     0.054      33      76 ..     540     583 ..     522     597 .. 0.85
   8 ?    1.8   0.0     0.098   2.9e+02      52      90 ..     615     652 ..     611     654 .. 0.88
   9 ?    2.3   0.0     0.072   2.1e+02      28      62 ..     677     718 ..     666     741 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.91
  ANAPC4_WD40 11 AlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrllda 67
                 A    ++ +l +  ng+++ ++  +++++ ++ L   p+ + L +     ++r+++ 
   CCE27731.1 36 ATTLGEDAVLTNPANGKHLAQI--EGDGELISTLTLTPSASHLIICSRSLSMRIFSL 90
                 5555566666677777777777..677888888888888877777777777777665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00048
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                   + ++  v  La     +lLa +  dg++++ d+  g v h+++  s   ++ l++
   CCE27731.1 107 LKPHGTPVVVLAVDRTSTLLATGGTDGTIKVWDIAGGYVTHTFRGPSVL-ISALHF 161
                  46678889999999999**************************988775.888877 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0024
  ANAPC4_WD40  18 ellvfRlngqrvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                  +l+v          l       + +++ s ++++ ++p+ + L+ a  d ++   d +s k+ + +++
   CCE27731.1 211 KLRVWD--------LhkracvaNLESHVSDIQKIDYSPEQHALVSASRDKTIIWWDTKSWKIRKIVPC 270
                  444444........333333323477788899999999999999999999998888888888776665 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.12
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                    +g+l   a ++g +r+ d  sgk +   + ++++
   CCE27731.1 280 FDEGRLTFSAGANGCLRIWDTDSGKELTPAQSEKSE 315
                  5679999999***************99888777654 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.13
  ANAPC4_WD40  39 sevrsLaWk.pdgklLavaysdgevrlldaesgkv 72 
                   e+ +La+  pd +++a a++   vrl+++ +   
   CCE27731.1 368 DEIIDLAYMlPDRSFMALATNSEDVRLISVAQDSQ 402
                  56666776537888999999999999999987665 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.24
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldae 68 
                   v sL    +g+ +a + +d++ rl  + 
   CCE27731.1 435 IVISLDVDWSGHWIATGAKDNNARLWRVD 463
                  5667777889*************998775 PP

  == domain 7  score: 13.8 bits;  conditional E-value: 1.8e-05
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  +++++++ +++++ +++g+l+a a +d +v++ ++e+g+v   l
   CCE27731.1 540 TRKAHEKDINAINIHHSGSLFASASQDKTVKIWSVEEGEVQGIL 583
                  5688999*******************************986555 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.098
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  ++  +  d +v+l + ++ +++++++ +s++ v ++ W 
   CCE27731.1 615 VILTGSGDKSVKLWSLSDYTCIRTFEGHSNS-VLKVAWL 652
                  566788999*******************995.***9995 PP

  == domain 9  score: 2.3 bits;  conditional E-value: 0.072
  ANAPC4_WD40  28 rvwtl.......eedkedsevrsLaWkpdgklLavaysdgev 62 
                  +vw++       + d+++ +v ++a +p+ + +a +  d++v
   CCE27731.1 677 KVWDAnsgeaacTLDNHEDRVWAVAVHPETNTIASGSGDSTV 718
                  333333333333345555555555555555555555555555 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.055   1.6e+02     229     255 ..     122     148 ..     112     153 .. 0.80
   2 !    7.8   0.1   0.00037       1.1     233     259 ..     203     229 ..     161     261 .. 0.70
   3 ?    0.6   0.0     0.058   1.7e+02     233     253 ..     286     306 ..     260     318 .. 0.79
   4 ?    2.2   0.0     0.019        56     231     250 ..     558     577 ..     531     584 .. 0.77
   5 !    6.2   0.0    0.0012       3.5     229     259 ..     612     642 ..     608     687 .. 0.77
   6 ?   -0.8   0.1      0.15   4.4e+02     262     379 ..     739     854 ..     668     885 .. 0.47

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.055
                 TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat 255
                 ++t+l++   dg+++vW+++ g ++ t
  CCE27731.1 122 TSTLLATGGTDGTIKVWDIAGGYVTHT 148
                 7899999999*********98877766 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00037
                 EEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 233 lfalsrdgkLrvWnlltgkclatidll 259
                 l++ s+dgkLrvW+l    c+a  +  
  CCE27731.1 203 LASGSQDGKLRVWDLHKRACVANLESH 229
                 67779****************986666 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.058
                 EEEEETT-EEEEEETTTTEEE CS
      Nup160 233 lfalsrdgkLrvWnlltgkcl 253
                  f++  +g Lr+W++++gk l
  CCE27731.1 286 TFSAGANGCLRIWDTDSGKEL 306
                 578889**********99876 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.019
                 TEEEEEETT-EEEEEETTTT CS
      Nup160 231 tylfalsrdgkLrvWnlltg 250
                 ++ +++s+d+++++W+++ g
  CCE27731.1 558 SLFASASQDKTVKIWSVEEG 577
                 455689***********876 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.0012
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatidll 259
                 g+ ++++ s d+ +++W+l++++c++t++  
  CCE27731.1 612 GKGVILTGSGDKSVKLWSLSDYTCIRTFEGH 642
                 78899999*******************7654 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 0.15
                 SSSTTS--SSEESEEESSSSEEEE..........E--GGG-EEEEEEEEEEE-...SSSEEEEES-S--.----S-TT...--EEEEEEEEE-T...TE CS
      Nup160 262 eeaqdessskstldpaesslirvsdggqsylvvtyspssggefkvwkvkkedtsvslglvdlfleqtiv.padpdssn...vweLrDfaltsse...kg 353
                  ++q+++ +      +  s++ ++      l++ + ++++    + +v +++++ +++l  l +  +++ +  +d++    +  LrD +        ++
  CCE27731.1 739 MIEQQQELEN---HIYAGSYREAI-----TLALQLNHPGRLLNLFTTVVTSNSPDQGSLCGLKAVDEVLgSL-SDEQIfllLLRLRDWNTNARTapvAQ 828
                 3333333333...11222222222.....3444444444433333333344443444444444444444222.22222244446666443333334677 PP

                 EEEEEEEEETTEEEEEEEEEE-SS-S CS
      Nup160 354 felwalwknnegsvlkvlkinfesde 379
                   lw+l ++  +s+++ l++  + ++
  CCE27731.1 829 RILWTLVRSYPASKFSNLTVRGARGQ 854
                 77777777777777666666655555 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0   0.00076       2.3     203     265 ..     113     171 ..     103     218 .. 0.81
   2 ?    1.9   0.1     0.025        73     216     243 ..     203     230 ..     190     272 .. 0.65
   3 ?    2.5   0.1     0.017        49     198     233 ..     542     576 ..     509     587 .. 0.84
   4 !    3.7   0.0    0.0071        21      44     112 ..     622     685 ..     620     694 .. 0.84
   5 ?    0.5   0.0     0.066     2e+02     200     236 ..     693     728 ..     689     784 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00076
                    -EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH.HHSCHTTTCGCT CS
  Nucleoporin_N 203 eivqlridssrrilytlsskgvirvydlsasngesslksdidirqilleaitesliasaplas 265
                    ++v l++d ++ +l t  ++g+i+v+d+     + + ++++   ++l++a++ +  a+ + ++
     CCE27731.1 113 PVVVLAVDRTSTLLATGGTDGTIKVWDIA----GGYVTHTFRGPSVLISALHFFEVAARSGVQ 171
                    57889***********************9....778888888888888887776666655555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.025
                    EEEEETTSEEEEEEEETTCEE-EEEEEE CS
  Nucleoporin_N 216 lytlsskgvirvydlsasngesslksdi 243
                    l + s++g++rv+dl++++   +l+s++
     CCE27731.1 203 LASGSQDGKLRVWDLHKRACVANLESHV 230
                    6667888888888888665544444433 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.017
                    ---GG-EEEEEEECCTCEEEEEETTSEEEEEEEETT CS
  Nucleoporin_N 198 asereeivqlridssrrilytlsskgvirvydlsas 233
                    +  +++i +++i++s  +  ++s++++++++ ++ +
     CCE27731.1 542 KAHEKDINAINIHHSGSLFASASQDKTVKIWSVE-E 576
                    5678899999999999999999999999999998.4 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.0071
                    TTEEEEEETTSSSS...EEEEEE----S---EEEEEE---SSSS-SSSCEEEEECTTSEEEEECECCS- CS
  Nucleoporin_N  44 dnklflWnYnstasspstdtipydgeehtilavglLvkpkpgtfveevgllLvvattgeivyweviysa 112
                    d+++ lW+ ++ +     +  +++g+++++l+v+ L +p + + ++ +  ++  a  g +++w   +++
     CCE27731.1 622 DKSVKLWSLSDYT-----CIRTFEGHSNSVLKVAWLNTPAKQEQSKRPVQFVTAAGDGLVKVWDANSGE 685
                    7889999999995.....***********************9999988888888888888888766655 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.066
                    -GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE CS
  Nucleoporin_N 200 ereeivqlridssrrilytlsskgvirvydlsasnge 236
                     ++++++++++++++ + + s ++++ ++  + s + 
     CCE27731.1 693 HEDRVWAVAVHPETNTIASGSGDSTVTFWTDT-STET 728
                    6899*************************633.3333 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.0       2.9   8.6e+03       9      30 ..     120     141 ..     116     149 .. 0.69
   2 ?   -0.1   0.0      0.15   4.5e+02      89     145 ..     197     256 ..     178     274 .. 0.67
   3 ?    1.6   0.0     0.046   1.4e+02       3      32 ..     436     465 ..     434     478 .. 0.81
   4 ?    2.1   0.0     0.033        98       2      48 ..     547     593 ..     546     613 .. 0.86
   5 ?    1.4   0.0     0.053   1.6e+02      14      52 ..     615     653 ..     609     764 .. 0.67

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 2.9
   WD40_like   9 skkgslilyGgkddkctvlkle 30 
                 ++ ++l++ Gg d +++v ++ 
  CCE27731.1 120 DRTSTLLATGGTDGTIKVWDIA 141
                 4467777888888877777765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.15
   WD40_like  89 kviddklliGtnkGsiyvfskdl.qleevllgqsseIkeikie..nnkiysLsesafivf 145
                 ++i+ +l+ G++ G++ v++     ++  l ++ s+I++i ++  +  + s s ++ i++
  CCE27731.1 197 TTINFRLASGSQDGKLRVWDLHKrACVANLESHVSDIQKIDYSpeQHALVSASRDKTIIW 256
                 566777788888888888654421455566788888888887533556666666665553 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.046
   WD40_like   3 iYsidiskkgslilyGgkddkctvlklesl 32 
                 + s+d++  g+ i+ G+kd+++++  ++  
  CCE27731.1 436 VISLDVDWSGHWIATGAKDNNARLWRVDPA 465
                 5689********************998744 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.033
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifv 48 
                 +i +i+i + gsl++  ++d+++++ ++e +e+  i+ + +  v  v
  CCE27731.1 547 DINAINIHHSGSLFASASQDKTVKIWSVEEGEVQGILRGHKRGVWSV 593
                 6889***************************9999988877766555 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.053
   WD40_like  14 lilyGgkddkctvlkleslesvsivesfedSvifvklld 52 
                 +il G+ d+ +++ +l   + +  +e+ ++Sv+ v  l+
  CCE27731.1 615 VILTGSGDKSVKLWSLSDYTCIRTFEGHSNSVLKVAWLN 653
                 789999999999999999999999999999999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 6308.91
//
Query:       CCE27732.1  [L=545]
Description: uncharacterized protein CPUR_01206 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.38   10.8   8.9       0.87    9.6   8.9    1.6  1  Mito_fiss_reg  Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   8.9   4.8e-05      0.87     168     213 ..     289     337 ..     257     347 .. 0.46

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 4.8e-05
  Mito_fiss_reg 168 aspslep.ssslppppppppppi...ppespsvldssnsaielikqrrga 213
                    ++p+  p + s+pppppppppp     ++s+ + d sn + e ++q++++
     CCE27732.1 289 PPPPP-PaLPSPPPPPPPPPPPAhtiASSSTASPDPSNDTSESERQEPES 337
                    11211.11122233333333332222333444444444444444444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4298.50
//
Query:       CCE27733.1  [L=721]
Description: probable cell division control protein nda4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.2e-106  353.5   0.2   5.3e-105  349.5   0.0    2.3  2  MCM              MCM P-loop domain
    1.6e-36  125.0   0.4      3e-36  124.1   0.4    1.4  1  MCM_OB           MCM OB domain
    2.2e-28   98.5   1.8    5.6e-28   97.2   1.8    1.7  1  MCM_lid          MCM AAA-lid domain
      7e-16   58.7   1.2    1.8e-15   57.4   1.2    1.7  1  MCM_N            MCM N-terminal domain
      2e-06   27.4   0.0    0.00021   20.8   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      1e-05   25.5   0.0    2.3e-05   24.4   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00014   21.8   0.0    0.00074   19.4   0.0    2.2  3  AAA_3            ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.026   14.9   0.0       0.11   12.9   0.0    2.1  1  AAA              ATPase family associated with various cellul
      0.049   13.3   0.0        1.2    8.8   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
       0.21   11.9   1.4          3    8.2   1.4    2.8  1  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.5   0.0    3e-108  5.3e-105       2     224 .]     308     530 ..     307     530 .. 0.99
   2 ?    1.5   0.0     0.075   1.3e+02       5      49 ..     600     644 ..     598     658 .. 0.83

  Alignments for each domain:
  == domain 1  score: 349.5 bits;  conditional E-value: 3e-108
                 HHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSE CS
         MCM   2 veeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaa 100
                 ++e+ el++++d+++ ++++iapsiyg++d+kkail++l+gg+kk l+d++klrgdinvll+gdpgtaKsqlLk+vek ap ++ytsgkgssaagLta+
  CCE27733.1 308 EQEFLELSRRPDLYNVMADCIAPSIYGNKDIKKAILCLLLGGSKKILPDGMKLRGDINVLLLGDPGTAKSQLLKFVEKAAPISIYTSGKGSSAAGLTAS 406
                 68999********************************************************************************************** PP

                 EEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSS CS
         MCM 101 vvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFD 199
                 v+rd++t+ef+le+Ga+vlad+Gv+ciDefdkm++edr+a+hEamEqqtisiaKaGi+++LnartsvlaAanp++gryd+ k+  eni++++++LsrFD
  CCE27733.1 407 VQRDQSTREFYLEGGAMVLADGGVVCIDEFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNARTSVLAAANPIFGRYDDMKTPGENIDFQTTILSRFD 505
                 *************************************************************************************************** PP

                 EEEEE-SSTTHHHHHHHHHHHHHHH CS
         MCM 200 lifvllDkvdeekDeelaehivslh 224
                 +if+++D++ +ekDe++a+h++ +h
  CCE27733.1 506 MIFIVKDEHTREKDERIARHVMGIH 530
                 *********************9876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.075
                 HHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBS CS
         MCM   5 ikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkle 49 
                 i++l++  +i+e+l+k     i  +e+v +ai l l ++++  ++
  CCE27733.1 600 IRQLEAIVRITESLAKLTLSPIATEEHVDEAIRLFLCSTMDAVNQ 644
                 77888888999**********************999998876554 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   0.4   1.7e-39     3e-36       2     125 ..     126     263 ..     125     264 .. 0.93

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 1.7e-39
                 XGG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEES---.......-SB-..........TTT-HHH-EEE-GGGSEEEEEEEEEEE-- CS
      MCM_OB   2 lRdlrsehigklvkveGivtrasevkpklkkavfeckkcgktvevelee.......PrkCe........ekeCeskdpfkletekskfvdfqklklQEs 85 
                 +R+l+s +i +lv+v+Giv+ as +++k+++++++c++c++++ +++         Pr C+        +++C+  dp+ +++eks+fvd+q +klQE+
  CCE27733.1 126 IRNLDSMTIARLVRVPGIVIGASVMSSKATELHIQCRNCQNQEVIHVLGgfagvtlPRICSrkripndpSEKCG-LDPYYVMHEKSQFVDQQIIKLQEA 223
                 8***************************************9777744445666667*****9*****9999***.9*********************** PP

                 -----------EEEEEEEGGGTT---TT-EEEEEEEEEEE CS
      MCM_OB  86 peevpaGelPrslevileddlvdkvkPGdrvevtGiyral 125
                 p++vp+GelPr++ + ++++l+++v PG+r++v+Gi++++
  CCE27733.1 224 PDQVPVGELPRHVLISADRYLTNRVVPGSRCTVMGIFSIY 263
                 *************************************987 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   1.8   3.1e-31   5.6e-28       2      86 ..     548     637 ..     547     638 .. 0.94

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 3.1e-31
                 HHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHH.....TSSTSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHHHH CS
     MCM_lid   2 llrkYiayarekikPklseeakeklseaYvelRkee.....edskrksipitvRqLesliRLseAlAklrlsevvteedveeairllkes 86 
                 +lr+Yi+y+++++ P+ls ea+ekls+++v++R++      e ++r+sipit RqLe+++R++e+lAkl+ls ++tee+v+eairl+  s
  CCE27733.1 548 KLRRYITYCKTRCAPRLSSEAAEKLSSHFVSIRRQVhaaemEANTRSSIPITIRQLEAIVRITESLAKLTLSPIATEEHVDEAIRLFLCS 637
                 79********************************998887644599****************************************9877 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   1.2   9.8e-19   1.8e-15       1      83 [.      27     105 ..      27     139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 9.8e-19
       MCM_N   1 qekFedFLeefkddsededgekkYrdqlqemaerekttLevdlddLaafdeeLaeailenpkeylplleealkevvkk.lepsy 83 
                 q++ e+F+ +f     + d++++Yrdql+e+a  +k+   v+++dL +f+eeLa+++ ++p e++pl+e+alk++  + ++p +
  CCE27733.1  27 QQQLETFILDF-----RLDNNFVYRDQLRENALLKKYYCDVNINDLINFNEELAHKMASEPAEIIPLFEAALKKCTHRiVFPHE 105
                 68899******.....8899*******************************************************987344443 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.015        26      21      44 ..     362     385 ..     357     413 .. 0.87
   2 !   20.8   0.0   1.1e-07   0.00021      98     159 ..     419     480 ..     413     504 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.015
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlps 44 
                   G  n+ll+G pG+ K+ l k +++
    CCE27733.1 362 GDINVLLLGDPGTAKSQLLKFVEK 385
                   7889************99887665 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.1e-07
  Mg_chelatase  98 kpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpc 159
                   + G++ la  Gv+ +DE+ +++ +   ++ e +e+++++i++a  ++   ar+ ++aa+Np 
    CCE27733.1 419 EGGAMVLADGGVVCIDEFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNARTSVLAAANPI 480
                   56999*******************************************************96 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.3e-08   2.3e-05       1     123 [.     365     480 ..     365     490 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.3e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttsl.vdsplvraaregeilvlDEveraesevlnsLlslleerrlllee 98 
                 +vlL+G+pGt+Ks+l + + +a  +++ ++   ++ +++ l+ +++ +++t+++  ++ ++     g ++++DE++++++e   + +  +e++++++++
  CCE27733.1 365 NVLLLGDPGTAKSQLLKFVEKA--APISIYTSGKGSSAAGLTASVQRDQSTREFyLEGGAM-VLADGGVVCIDEFDKMRDEDRVAIHEAMEQQTISIAK 460
                 69***************99998..688899999***********99885555541344444.689*******************************988 PP

                 SSSEEE---......-EEEEEESS- CS
       AAA_5  99 ggelvkaknddllerfrviatanpl 123
                  g  +  ++      ++v+a+anp 
  CCE27733.1 461 AGITTILNAR-----TSVLAAANPI 480
                 7766555553.....7888888885 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       7.6   1.4e+04      38      56 ..     141     159 ..     140     161 .. 0.82
   2 ?   -3.1   0.0       3.8   6.8e+03      16      39 ..     206     229 ..     198     243 .. 0.78
   3 !   19.4   0.0   4.1e-07   0.00074       2     113 ..     366     480 ..     365     485 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 7.6
       AAA_3  38 PsdilGtevfeekekefef 56 
                 P+ ++G++v+++k++e+++
  CCE27733.1 141 PGIVIGASVMSSKATELHI 159
                 7889999999999988876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.8
       AAA_3  16 vkalakaldlefkriqftpdllPs 39 
                 +++ ++ +d ++ ++q +pd +P 
  CCE27733.1 206 MHEKSQFVDQQIIKLQEAPDQVPV 229
                 566678889999999999999885 PP

  == domain 3  score: 19.4 bits;  conditional E-value: 4.1e-07
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvf.an..llladeinrappktqsalleameerqvtve..g 95 
                 vll g PG+ak +l k + ka  +++           + ++ +   +++++ef ++ G+++ a+  ++  de ++     + a+ eame+++++++  g
  CCE27733.1 366 VLLLGDPGTAKSQLLKFVEKAAPISIYTSG--KGSSAAGLTASVQRDQSTREFYLEGGAMVlADggVVCIDEFDKMRDEDRVAIHEAMEQQTISIAkaG 462
                 788889999999999988888777764433..333456777777788899********976243559*************************9987225 PP

       AAA_3  96 ethklpepflvlatqnPi 113
                  t+ l+    vla+ nPi
  CCE27733.1 463 ITTILNARTSVLAAANPI 480
                 6889*************8 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.2e-05      0.11       1      75 [.     366     448 ..     366     487 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.2e-05
                 EEEESSTTSSHHHHHHHHHHHHTHEE.EEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHHH....T CS
         AAA   1 vllyGppGtGKTllakavakelgvef.leisgsell.skyvgesekkirelfkeakeka..kpsilfiDEidalaksr....s 75 
                 vll G pGt K+ l k v k + +++  + +gs+        ++ +++re+  e  ++   +  ++ iDE+d++  ++    +
  CCE27733.1 366 VLLLGDPGTAKSQLLKFVEKAAPISIyTSGKGSSAAgLTASVQRDQSTREFYLEGGAMVlaDGGVVCIDEFDKMRDEDrvaiH 448
                 79*******************987763556666666333445556666666665444446455***********666532221 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.1   1.8e+02      21      42 ..     362     383 ..     356     392 .. 0.83
   2 ?    8.8   0.0   0.00068       1.2      87     142 ..     421     478 ..     415     507 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.1
                      SSS-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat  21 tdlsvlitGesGtGKellarai 42 
                       d++vl++G+ Gt K+ l + +
       CCE27733.1 362 GDINVLLLGDPGTAKSQLLKFV 383
                      5799***********9987766 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00068
                      HHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEE..ESBTSSSEEE--EEEEEEES CS
  Sigma54_activat  87 GlfekadgGtlfLDeigelplelQekLlrvlqegev..ervGsskeikvdvriiaatn 142
                      G++  adgG++ +De  ++  e  + + ++++++++   + G ++  ++ + ++aa+n
       CCE27733.1 421 GAMVLADGGVVCIDEFDKMRDEDRVAIHEAMEQQTIsiAKAGITTILNARTSVLAAAN 478
                      8999***************************999752268899999999999998887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.4    0.0017         3      26      63 ..     365     400 ..     358     670 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0017
      AAA_16  26 lvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 +vll G++G+ Ks l++ + +a+  +  i+++gk  + 
  CCE27733.1 365 NVLLLGDPGTAKSQLLKFVEKAAPIS--IYTSGKGSSA 400
                 79***************999988887..3344443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 5464.05
//
Query:       CCE27734.1  [L=1069]
Description: related to VPS54-subunit of VP51-54 complex,required for protein sorting at the yeast late Golgi [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-51  172.8   0.1    1.9e-50  170.8   0.1    2.2  1  Vps54         Vps54-like protein
    5.2e-07   29.2   0.3    1.6e-06   27.6   0.3    1.8  1  Vps54_N       Vacuolar-sorting protein 54, of GARP complex
     0.0025   17.6   0.0      0.012   15.4   0.0    2.1  2  DUF2451       Protein of unknown function C-terminus (DUF2451
  ------ inclusion threshold ------
      0.062   13.2   2.6       0.53   10.2   0.3    3.1  3  Sec8_exocyst  Sec8 exocyst complex component specific domain
      0.083   12.4   0.1       0.57    9.7   0.0    2.5  2  KNOX2         KNOX2 domain


Domain annotation for each model (and alignments):
>> Vps54  Vps54-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   0.1   5.4e-54   1.9e-50       2     134 .]     727     860 ..     726     860 .. 0.98

  Alignments for each domain:
  == domain 1  score: 170.8 bits;  conditional E-value: 5.4e-54
       Vps54   2 ekfvvvesallllkmieeYlelakelpslaseilsrllelLklfNsrtcqliLgAgAtrsagLktItakhLalasqslslvialipyvkealerhl.ee 99 
                 ekf++++sa+l+l+++ ++l+l++++ps++++++s+l+ +L+lfNsr++qliLgAgAtrsagLk+It+khLalasq ls+ ++l+p+v+e+++ h+ ++
  CCE27734.1 727 EKFMLPNSAILCLNGMGNFLSLIASIPSMTTDVASSLIAYLQLFNSRCTQLILGAGATRSAGLKNITTKHLALASQGLSFTATLVPHVREFVRGHAgSS 825
                 89*********************************************************************************************9888 PP

       Vps54 100 ksqesllaefdkvkrdyqehqneihaKLvsImedr 134
                 +  ++l++efdk++r++qehq++i++KLv+Im+ r
  CCE27734.1 826 AGVSNLMSEFDKIRRLLQEHQSSIYQKLVDIMNGR 860
                 8899999*************************976 PP

>> Vps54_N  Vacuolar-sorting protein 54, of GARP complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.3   4.4e-10   1.6e-06      38     149 ..     176     287 ..     162     297 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 4.4e-10
     Vps54_N  38 kklksqhdvvskklsqlilekreefvkelseveeiekelkesvvickngrraLdlakkeltrtsLellakskkrqllkkllktltaikelrelekrlee 136
                 +kl+ ++d ++ +l + i   ++ f   l+ ++e+++e +esv  +++ rr+L+   +e+++  L ++ k+++++ l +l +  ++++ + e   + e+
  CCE27734.1 176 EKLSWYMDTIEVHLINSISTASTTFFTALGSLKELHSEATESVERIEALRRELEALDEEMATSGLLIVQKRQRQENLRQLNDAVSQLRYIVEGVAHCES 274
                 678999********************************************************************************************* PP

     Vps54_N 137 lleeedysaAiql 149
                 l++ ++  +A++ 
  CCE27734.1 275 LVDADELDQALSS 287
                 **99999999875 PP

>> DUF2451  Protein of unknown function C-terminus (DUF2451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         1   3.7e+03      69      87 ..     609     659 ..     552     672 .. 0.56
   2 !   15.4   0.0   3.3e-06     0.012      37     171 ..     829     957 ..     795     968 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1
     DUF2451  69 l................................eslleaianvkWdvkeva 87 
                                                  ++l + +++ +W+ k+ +
  CCE27734.1 609 EceaisgrsgtslknvvnghikefvqrnrdaemQKLAQGMEADQWNAKDFS 659
                 033333333333333333333333333333333455556666666666555 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 3.3e-06
     DUF2451  37 rglleeFyeqtvsavadlrepiykavasrllnle.slleaianvkWdvkevatehssYvdqllkevesfskklqelkerlklpeevkkalweaavevvt 134
                 ++l++eF +++    ++ ++ iy+++   +        +++ +++Wd ++  + h sY + l ke +++++ l++     +lpe   +++++ +++   
  CCE27734.1 829 SNLMSEF-DKIRRLLQEHQSSIYQKLVDIMNGRAaLHAKSMRTIDWDTSNADSVH-SYMEILAKETTTLHRVLTK-----NLPETCIQTIMTPVFARYK 920
                 4555665.47777777777777765555444333378899********9988776.6******************.....8****************** PP

     DUF2451 135 etLvegyskvkkcseeGRalMqlDvqqllakleklsk 171
                 e+L   + ++   +e+G   M+ Dv+ +++kl k+ +
  CCE27734.1 921 EQLGAPFREATPKTEAGQQSMLRDVEFFSTKLGKIEG 957
                 *******************************999865 PP

>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   0.00015      0.53      48     123 ..     181     256 ..     173     282 .. 0.76
   2 ?    0.3   0.0      0.17   6.1e+02      46      68 ..     611     633 ..     605     637 .. 0.81
   3 ?   -0.5   0.0       0.3   1.1e+03      34      92 ..     824     882 ..     811     905 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
  Sec8_exocyst  48 lkkqieeaLqevvnehhqaFnssiasYskilssiqesqekvselKesleeakkklstkkkeLkelnarsakykevi 123
                    ++ ie +L + +++ + +F ++ +s +++ s  +es e++++l+++le+  +++ t    + +  +r  +++++ 
    CCE27734.1 181 YMDTIEVHLINSISTASTTFFTALGSLKELHSEATESVERIEALRRELEALDEEMATSGLLIVQKRQRQENLRQLN 256
                   578899999999*************************************999988776555544444444444333 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.17
  Sec8_exocyst  46 kqlkkqieeaLqevvnehhqaFn 68 
                   + ++ +  ++L++vvn h + F 
    CCE27734.1 611 EAISGRSGTSLKNVVNGHIKEFV 633
                   5667778899********99995 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.3
  Sec8_exocyst  34 ssvGlahrlkefkqlkkqieeaLqevvnehhqaFnssiasYskilssiqesqekvselK 92 
                   ss G ++ ++ef+++ + ++e+  ++ ++  +  n   a + k +++i+  +++   + 
    CCE27734.1 824 SSAGVSNLMSEFDKIRRLLQEHQSSIYQKLVDIMNGRAALHAKSMRTIDWDTSNADSVH 882
                   67777777888888888888777777777777777777777777776665555555544 PP

>> KNOX2  KNOX2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.2   4.3e+03      35      47 ..     319     331 ..     315     331 .. 0.89
   2 ?    9.7   0.0   0.00016      0.57      18      34 ..     915     931 ..     913     941 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.2
       KNOX2  35 eFlreieqqLqsL 47 
                 ++l++i q L++L
  CCE27734.1 319 SALQTINQDLNTL 331
                 799*******987 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00016
       KNOX2  18 vLvkYkeeLtrpveEAt 34 
                 v ++Yke+L  p++EAt
  CCE27734.1 915 VFARYKEQLGAPFREAT 931
                 6789************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1069 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1428  (0.0796475); expected 358.6 (0.02)
Passed bias filter:                      718  (0.0400469); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 6831.61
//
Query:       CCE27735.1  [L=347]
Description: FPPS farnesyl pyrophosphate synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-89  296.8   0.0    1.2e-88  296.5   0.0    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.5   0.0   6.7e-93   1.2e-88       2     255 ..      36     299 ..      35     300 .. 0.93

  Alignments for each domain:
  == domain 1  score: 296.5 bits;  conditional E-value: 6.7e-93
                      HHHHHHHHHHHHSSS--HHHHHHHHHHHHHS.CG..HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHC..TCHHHHHHHHHHH CS
  polyprenyl_synt   2 elleealeylveagGKrlRpllvllaaealk.ee..eeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrl..vGnklAindgdfl 90 
                      ++l+++l+ +   gGK +R+++v +++ +l  ++  e+e++++a+l+w++ell+a++Lv+DDimD+s+tRRG+pc++r+  vG+  Aind+++l
       CCE27735.1  36 DWLKNNLQVNP-LGGKCNRGMSVPDSVSLLLgRPlnEDEYFQSATLGWMTELLQAFFLVSDDIMDSSITRRGKPCWYRQpgVGMV-AINDAFVL 127
                      69*********.******************96446688*****************************************555555.******** PP

                      HHHHHHHHHHHH..STT.HHHHHHHHHHHHHHHHHHHHHH...HHTTTTTCCC.SHHHHHHHHHHHTH.HHCHHHHHHHHHHTT.HHHHHHHHH CS
  polyprenyl_synt  91 larafellaklf..eks.lellelfsevllqtveGqlldl...eeekdddlskfsleeyleivkyKTa.ylfalpvalaallag.asdeeleal 176
                      ++ ++ ll+k+f  ++  ++l+elf+e+++qt++Gql+dl   +  +++dl++fs+++y+ iv yKTa y+f+lp+ala++  + a++++l+ +
       CCE27735.1 128 ESSIYVLLKKYFrsHPAyIDLVELFHETSFQTEMGQLCDLltaPV-DKVDLDNFSMTKYRFIVIYKTAyYSFYLPIALALHQLNlATPKNLKIA 220
                      ************986667*********************965333.48************************************555699**** PP

                      HHHHHHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTT.SSHHHHHHHHHHHHH CS
  polyprenyl_synt 177 kdiglelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeilg.kkaekeedvkealel 255
                      +di+ +lG++FQiqDDylD fg pe++gK+ gtDi+++kc++++++a+e+a+peqrk l+e++g +  e+e+ vk+++++
       CCE27735.1 221 EDILIPLGEYFQIQDDYLDNFGLPEHIGKI-GTDIKDNKCSWLVNQAIETATPEQRKMLEENYGkQSDENEAVVKKLYAD 299
                      ******************************.*********************************8888999999***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2572.15
//
Query:       CCE27736.1  [L=169]
Description: related to dnase1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1328.30
//
Query:       CCE27737.1  [L=544]
Description: uncharacterized protein CPUR_01211 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1248  (0.0696079); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                       148  (0.00825478); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:00.55
# Mc/sec: 2980.43
//
Query:       CCE27738.1  [L=698]
Description: related to cell division control protein CDC23 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-54  183.3   0.3    6.3e-54  181.8   0.0    2.0  2  ANAPC8    Anaphase promoting complex subunit 8 / Cdc23
    9.7e-23   78.4  11.2    7.2e-05   22.7   0.0    7.7  7  TPR_8     Tetratricopeptide repeat
    2.6e-20   71.3   7.2    9.5e-05   22.1   0.0    8.0  8  TPR_1     Tetratricopeptide repeat
    5.5e-13   48.0  19.8      0.051   13.7   0.0    9.8 10  TPR_2     Tetratricopeptide repeat
    1.3e-08   35.0  22.4      0.006   17.3   0.1    9.0  9  TPR_14    Tetratricopeptide repeat
    2.9e-08   33.2   0.6    1.2e-06   28.1   0.1    3.1  3  TPR_11    TPR repeat
    1.8e-05   24.4   6.2      0.033   14.2   0.0    5.3  5  TPR_7     Tetratricopeptide repeat
    2.4e-05   24.9   0.1    2.4e-05   24.9   0.1    7.2  7  TPR_16    Tetratricopeptide repeat
    0.00015   22.0  22.9       0.19   12.1   0.1    7.2  7  TPR_12    Tetratricopeptide repeat
     0.0002   21.5   0.0        6.8    7.3   0.0    5.3  4  TPR_17    Tetratricopeptide repeat
    0.00035   21.0  13.4        7.3    7.5   0.1    8.0  9  TPR_6     Tetratricopeptide repeat
    0.00037   20.7  12.6      0.061   13.6   0.3    5.3  6  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
    0.00083   19.8  12.9        7.2    7.2   0.0    7.0  7  TPR_19    Tetratricopeptide repeat
     0.0039   17.3   5.7      0.052   13.6   0.1    3.8  5  DUF3856   Domain of Unknown Function (DUF3856)
      0.004   17.3  17.9        2.4    8.4   0.3    5.6  6  TPR_9     Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.18   12.1   0.8       0.43   10.9   0.8    1.6  1  DUF4164   Domain of unknown function (DUF4164)
        1.5    8.8   8.6        7.8    6.5   0.2    4.6  4  TPR_10    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> ANAPC8  Anaphase promoting complex subunit 8 / Cdc23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.8   0.0     6e-57   6.3e-54       1     140 []      10     197 ..      10     197 .. 0.96
   2 ?   -2.5   0.0       4.5   4.7e+03     109     127 ..     229     247 ..     223     252 .. 0.79

  Alignments for each domain:
  == domain 1  score: 181.8 bits;  conditional E-value: 6e-57
                 CHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTSS-----------------------.......HHHHHHHHHTHHHHHHHHHHHHTT-HHHHHHH.... CS
      ANAPC8   1 elraeLreavvklsercLyqsakWaaElLngleessaeedessteseseasespsraftankdpeeaaleakeldkYllAkslFDckEfdrcaav.... 95 
                 +lr++L++av+k sercLy+s kWaaElLn+l+e+++ee + s +   ea + +s+ ft+n dpeeaalea+el+kYllA+slFDckE+drcaav    
  CCE27738.1  10 QLRDALQDAVIKTSERCLYSSTKWAAELLNALPEPTDEEIQVSAT--PEAPKRTSPLFTPNLDPEEAALEARELSKYLLARSLFDCKEYDRCAAVflpe 106
                 79***********************************88887744..45566677789***************************************** PP

                 ..............................................TTT--SHHHHHHHHHHHHHHHHHHC---------------SSSTT CS
      ANAPC8  96 ..............................................lkdelsqkslFLalYakylagekrkeEesemvlgpqdkgnvvnke 140
                                                                +++lsqkslFLalYak+++gekr++E+semv+gpqd g+v+nk+
  CCE27738.1 107 allssilashseaettplrqqrtkgkakagegttsgvgagaggaavPLPKLSQKSLFLALYAKFMSGEKRRNEDSEMVMGPQDLGTVANKQ 197
                 **********************************************99*****************************************97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.5
                 HHHHHHHHHHHC------- CS
      ANAPC8 109 lYakylagekrkeEesemv 127
                 lY ++la ek   + ++  
  CCE27738.1 229 LYGMVLAKEKNDAQAMDYF 247
                 8999999999887776655 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.2   1.3e+03       5      24 ..      84     103 ..      82     104 .. 0.86
   2 ?    4.2   0.1     0.056        60       5      27 ..     228     250 ..     228     251 .. 0.92
   3 !   19.8   0.0   5.9e-07   0.00062       2      34 .]     389     421 ..     388     421 .. 0.94
   4 !   22.7   0.0   6.8e-08   7.2e-05       2      32 ..     423     453 ..     422     455 .. 0.93
   5 ?    5.5   0.3     0.022        24       1      32 [.     456     487 ..     456     487 .. 0.88
   6 !    9.4   0.1    0.0013       1.3       2      31 ..     491     520 ..     490     523 .. 0.92
   7 !   16.3   0.0   7.5e-06    0.0079       5      28 ..     551     574 ..     547     580 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.2
                 HHHHHHHHHTT-HHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyy 24 
                 y+l++ +++ ++y+   +++
  CCE27738.1  84 YLLARSLFDCKEYDRCAAVF 103
                 99************987766 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.056
                 HHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyeka 27 
                 y+ g+++ k ++  +A+ y+++ 
  CCE27738.1 228 YLYGMVLAKEKNDAQAMDYFMRS 250
                 789*****************986 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 5.9e-07
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 e+++ +g+ y+ l  +e+A++y+++al+ld+++
  CCE27738.1 389 ESCVVIGNYYSLLSMHEKAVQYFRRALTLDRSC 421
                 7999**************************975 PP

  == domain 4  score: 22.7 bits;  conditional E-value: 6.8e-08
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldp 32 
                 +a+ ++g+ y +l++ ++A+e+y++a++ ++
  CCE27738.1 423 SAWTLMGHEYVELKNTHAAIESYRRAVDVNR 453
                 69*************************9987 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.022
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldp 32 
                 ++a+y lg++y+ l+ +  +  yy+ka  l+p
  CCE27738.1 456 YRAWYGLGQTYEMLEMHTYSLWYYKKAAGLRP 487
                 59**********99999999999999988876 PP

  == domain 6  score: 9.4 bits;  conditional E-value: 0.0013
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleld 31 
                 ++++  gs+++k+g+ +  ++++++al +d
  CCE27738.1 491 KMWMAVGSCLQKMGREHDGIKALKRALLAD 520
                 689***********************9877 PP

  == domain 7  score: 16.3 bits;  conditional E-value: 7.5e-06
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekal 28 
                 ++++  y++lg+ eeAk+y+e ++
  CCE27738.1 551 LQIAVMYDNLGEEEEAKAYMELCV 574
                 6899******************98 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         3   3.2e+03       5      19 ..      84      98 ..      82     101 .. 0.87
   2 ?    1.5   0.0      0.29     3e+02       8      29 ..     231     252 ..     231     257 .. 0.85
   3 ?    4.6   0.0     0.029        30       8      33 ..     327     352 ..     323     353 .. 0.90
   4 !   22.1   0.0   9.1e-08   9.5e-05       6      33 ..     393     420 ..     388     421 .. 0.90
   5 !   19.4   0.0   6.4e-07   0.00068       3      33 ..     424     454 ..     423     455 .. 0.94
   6 !   11.6   0.2   0.00018      0.19       2      32 ..     457     487 ..     456     489 .. 0.92
   7 ?    4.8   0.1     0.025        26       4      28 ..     493     517 ..     491     523 .. 0.89
   8 ?    2.1   0.0      0.18   1.9e+02       6      23 ..     552     569 ..     548     574 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3
                HHHHHHHHHTT-HHH CS
       TPR_1  5 ynlGnayfklgkyde 19
                y l+  +f  ++yd 
  CCE27738.1 84 YLLARSLFDCKEYDR 98
                789999*******96 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.29
                 HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekALe 29 
                 G+++ k ++  +A +y+ + + 
  CCE27738.1 231 GMVLAKEKNDAQAMDYFMRSVH 252
                 88999************98765 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.029
                 HHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPn 33 
                 +++ ++ +++  A++++++ L+l P+
  CCE27738.1 327 ALLAYHSKDLMAAEQHFSRLLSLHPH 352
                 6778999****************996 PP

  == domain 4  score: 22.1 bits;  conditional E-value: 9.1e-08
                 HHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   6 nlGnayfklgkydeAleyyekALelnPn 33 
                  +Gn y  l ++++A++y+++AL+l+ +
  CCE27738.1 393 VIGNYYSLLSMHEKAVQYFRRALTLDRS 420
                 58************************87 PP

  == domain 5  score: 19.4 bits;  conditional E-value: 6.4e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                 a+  +G+ y +l++   A+e y++A+ +n  
  CCE27738.1 424 AWTLMGHEYVELKNTHAAIESYRRAVDVNRR 454
                 9**************************9975 PP

  == domain 6  score: 11.6 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnP 32 
                 +a+y+lG++y  l+++   l yy+kA  l+P
  CCE27738.1 457 RAWYGLGQTYEMLEMHTYSLWYYKKAAGLRP 487
                 8************************988877 PP

  == domain 7  score: 4.8 bits;  conditional E-value: 0.025
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekAL 28 
                 +   G +++k+g+  + +++ ++AL
  CCE27738.1 493 WMAVGSCLQKMGREHDGIKALKRAL 517
                 667799******************9 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.18
                 HHHHHHHHTT-HHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAley 23 
                 +++++y +lg+ +eA +y
  CCE27738.1 552 QIAVMYDNLGEEEEAKAY 569
                 6899***********887 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1       0.2   2.1e+02       5      24 ..      84     103 ..      81     104 .. 0.90
   2 ?    4.8   0.0     0.034        36       5      32 ..     228     255 ..     226     257 .. 0.88
   3 ?   -2.7   0.0       8.9   9.4e+03      24      33 ..     309     318 ..     307     319 .. 0.85
   4 ?    4.6   0.0      0.04        42       6      33 ..     325     352 ..     320     353 .. 0.87
   5 !   13.7   0.0   4.8e-05     0.051       2      32 ..     389     419 ..     388     421 .. 0.88
   6 !   11.1   0.0   0.00032      0.34       3      32 ..     424     453 ..     423     455 .. 0.91
   7 ?    4.2   0.6     0.055        58       2      27 ..     457     482 ..     456     487 .. 0.79
   8 ?    4.5   0.1     0.042        44       4      29 ..     493     518 ..     491     523 .. 0.91
   9 !    6.7   0.0    0.0082       8.6       6      32 ..     552     578 ..     547     580 .. 0.85
  10 ?   -0.0   0.1       1.2   1.3e+03       3      21 ..     644     662 ..     642     669 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.2
       TPR_2   5 ynlGlayyklgdyeeAleaf 24 
                 y l+++++  ++y+++++ f
  CCE27738.1  84 YLLARSLFDCKEYDRCAAVF 103
                 89*************99877 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.034
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                 y  G++++k ++ ++A ++f +++   P
  CCE27738.1 228 YLYGMVLAKEKNDAQAMDYFMRSVHKFP 255
                 789*****************99876666 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 8.9
       TPR_2  24 fekAleldPn 33 
                 +e+ l+l P+
  CCE27738.1 309 LEQLLSLFPT 318
                 799******8 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.04
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPn 33 
                 + +l++y+++d+  A+++f + l+l P+
  CCE27738.1 325 CNALLAYHSKDLMAAEQHFSRLLSLHPH 352
                 5688999999999************996 PP

  == domain 5  score: 13.7 bits;  conditional E-value: 4.8e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                 e +  +G+ y  l  +e+A+++f++Al ld 
  CCE27738.1 389 ESCVVIGNYYSLLSMHEKAVQYFRRALTLDR 419
                 566779***********************96 PP

  == domain 6  score: 11.1 bits;  conditional E-value: 0.00032
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 a+  +G  y +l++   A+e +++A+  + 
  CCE27738.1 424 AWTLMGHEYVELKNTHAAIESYRRAVDVNR 453
                 7999*********************99886 PP

  == domain 7  score: 4.2 bits;  conditional E-value: 0.055
       TPR_2   2 ealynlGlayyklgdyeeAleafekA 27 
                 +a+y lG+ y+ l  +   l +++kA
  CCE27738.1 457 RAWYGLGQTYEMLEMHTYSLWYYKKA 482
                 69*********998887777777776 PP

  == domain 8  score: 4.5 bits;  conditional E-value: 0.042
       TPR_2   4 lynlGlayyklgdyeeAleafekAle 29 
                 +++ G ++ k+g+  + ++a+++Al 
  CCE27738.1 493 WMAVGSCLQKMGREHDGIKALKRALL 518
                 8889********************96 PP

  == domain 9  score: 6.7 bits;  conditional E-value: 0.0082
       TPR_2   6 nlGlayyklgdyeeAleafekAleldP 32 
                 +++  y +lg+ eeA++++e +++ ++
  CCE27738.1 552 QIAVMYDNLGEEEEAKAYMELCVAQEE 578
                 67999**************98887665 PP

  == domain 10  score: -0.0 bits;  conditional E-value: 1.2
       TPR_2   3 alynlGlayyklgdyeeAl 21 
                 a ++l++ +++  dy+ A 
  CCE27738.1 644 ARMWLARFAMRTCDYAAAN 662
                 667999*********9996 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       3.9   4.1e+03       5      24 ..      84     103 ..      81     104 .. 0.88
   2 ?    4.5   0.0     0.073        77       3      44 .]     226     267 ..     224     267 .. 0.91
   3 ?    0.0   0.0         2   2.1e+03      18      35 ..     303     320 ..     297     330 .. 0.78
   4 ?    3.0   0.0      0.22   2.4e+02      11      33 ..     330     352 ..     322     360 .. 0.84
   5 !   10.6   0.0   0.00078      0.82       8      42 ..     395     429 ..     392     430 .. 0.89
   6 !   17.3   0.1   5.7e-06     0.006       3      43 ..     424     464 ..     422     465 .. 0.95
   7 ?    2.0   0.0      0.47   4.9e+02       3      29 ..     492     518 ..     491     525 .. 0.85
   8 ?    7.0   0.7     0.012        12       2      43 ..     548     589 ..     547     590 .. 0.90
   9 ?    0.7   0.6       1.2   1.3e+03       3      34 ..     644     675 ..     642     689 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3.9
      TPR_14   5 lalaeallalGdpdeAiall 24 
                 ++la+ l+   ++d+ +a++
  CCE27738.1  84 YLLARSLFDCKEYDRCAAVF 103
                 789***********998876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.073
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 + ++++ +l+   + ++A++++ r + ++P ++  w ++a l
  CCE27738.1 226 LEYLYGMVLAKEKNDAQAMDYFMRSVHKFPMNWGCWQEMAAL 267
                 5689999***********************999999999975 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 2
      TPR_14  18 deAiallrralalaPdda 35 
                  + +a l+++l+l+P++ 
  CCE27738.1 303 PDLAASLEQLLSLFPTSS 320
                 5667899********875 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.22
      TPR_14  11 llalGdpdeAiallrralalaPd 33 
                  +++ d+ +A++++ r+l+l+P 
  CCE27738.1 330 AYHSKDLMAAEQHFSRLLSLHPH 352
                 467788889*************6 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00078
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawllla 42 
                 + ++  l  +++A++++rral l+ + + aw+l++
  CCE27738.1 395 GNYYSLLSMHEKAVQYFRRALTLDRSCLSAWTLMG 429
                 567778889**********************9986 PP

  == domain 6  score: 17.3 bits;  conditional E-value: 5.7e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 a+ ++++ + +l ++ +Ai+ +rra++ +  d +aw+ l+q
  CCE27738.1 424 AWTLMGHEYVELKNTHAAIESYRRAVDVNRRDYRAWYGLGQ 464
                 89999**********************************98 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.47
      TPR_14   3 allalaeallalGdpdeAiallrrala 29 
                 +++a ++ l   G+  + i++l+ral 
  CCE27738.1 492 MWMAVGSCLQKMGREHDGIKALKRALL 518
                 588888889999*************85 PP

  == domain 8  score: 7.0 bits;  conditional E-value: 0.012
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++ l++a  + +lG+ +eA a+ + ++a+  ++a+a  l a+
  CCE27738.1 548 DVVLQIAVMYDNLGEEEEAKAYMELCVAQEEGNATAAALAAD 589
                 667899999*************************99988775 PP

  == domain 9  score: 0.7 bits;  conditional E-value: 1.2
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdd 34 
                 a++ la++ ++  d+++A +l+ ++++++ + 
  CCE27738.1 644 ARMWLARFAMRTCDYAAANRLAMELCQDGVEV 675
                 88999999999999888555554444444333 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.093        98      10      35 ..     404     429 ..     395     430 .. 0.80
   2 !   28.1   0.1   1.1e-09   1.2e-06       1      40 [.     429     468 ..     429     469 .. 0.96
   3 ?   -2.5   0.0         4   4.2e+03      28      34 ..     519     525 ..     516     528 .. 0.57

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.093
      TPR_11  10 yeeAieaYkkAlkldPdnaeayynLG 35 
                  e+A++ +++Al ld +  +a+  +G
  CCE27738.1 404 HEKAVQYFRRALTLDRSCLSAWTLMG 429
                 69*************88666666555 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 1.1e-09
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 G++y+e+ +  +Aie+Y++A++ +  + +a+y+LG++y +
  CCE27738.1 429 GHEYVELKNTHAAIESYRRAVDVNRRDYRAWYGLGQTYEM 468
                 99************************************86 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4
      TPR_11  28 aeayynL 34 
                 a+ayy  
  CCE27738.1 519 ADAYYDV 525
                 4555543 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         6   6.4e+03      17      24 ..     294     301 ..     292     313 .. 0.71
   2 !   14.2   0.0   3.2e-05     0.033       2      30 ..     391     419 ..     390     423 .. 0.82
   3 ?    4.1   0.1     0.054        57       4      30 ..     427     451 ..     424     457 .. 0.76
   4 ?    1.2   0.0      0.46   4.8e+02       2      34 ..     459     491 ..     458     492 .. 0.80
   5 ?    3.2   0.1       0.1   1.1e+02       4      34 ..     552     580 ..     550     582 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6
       TPR_7  17 eAielyeq 24 
                 + iely+q
  CCE27738.1 294 TSIELYQQ 301
                 57999999 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.2e-05
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltk 30 
                 ++ +++ ys l  +e+A+++++++L l++
  CCE27738.1 391 CVVIGNYYSLLSMHEKAVQYFRRALTLDR 419
                 67799******************665555 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.054
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltk 30 
                  +++ y++l ++  Aie y++  a++ 
  CCE27738.1 427 LMGHEYVELKNTHAAIESYRR--AVDV 451
                 5666699999***********..7765 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.46
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 ++ L+++y+ l  +   +++y+++ +l+  +++
  CCE27738.1 459 WYGLGQTYEMLEMHTYSLWYYKKAAGLRPWDGK 491
                 6778888888888888999***99998877765 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.1
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdped 34 
                 ++a++y +lG+ eeA  + e    ++ ++++
  CCE27738.1 552 QIAVMYDNLGEEEEAKAYMEL--CVAQEEGN 580
                 79**************99998..77766665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       7.5   7.9e+03      12      20 ..      83      91 ..      73     103 .. 0.52
   2 ?    1.5   0.0      0.46   4.9e+02       4      31 ..     327     351 ..     326     357 .. 0.69
   3 ?    0.5   0.0      0.92   9.7e+02      49      63 ..     403     417 ..     389     424 .. 0.76
   4 !   24.9   0.1   2.3e-08   2.4e-05       3      46 ..     428     468 ..     426     487 .. 0.92
   5 ?   -0.3   0.0       1.7   1.8e+03       9      27 ..     502     520 ..     495     529 .. 0.70
   6 ?    0.8   1.3      0.78   8.3e+02      32      59 ..     564     592 ..     558     597 .. 0.78
   7 ?    4.6   0.1      0.05        53      25      53 ..     633     661 ..     629     666 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.5
      TPR_16 12 dyddAaaal 20
                +y  A+ ++
  CCE27738.1 83 KYLLARSLF 91
                444444333 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.46
      TPR_16   4 araalragdyddAaaaleaalkrdpssP 31 
                 a++a+ ++d  +A+  + ++l ++   P
  CCE27738.1 327 ALLAYHSKDLMAAEQHFSRLLSLH---P 351
                 556666777777777777777776...5 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.92
      TPR_16  49 rlaeAaalyraalra 63 
                  +++A++++r+al+ 
  CCE27738.1 403 MHEKAVQYFRRALTL 417
                 578888888888854 PP

  == domain 4  score: 24.9 bits;  conditional E-value: 2.3e-08
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalr 46 
                 ++++++++++  +A++ +++a++ +    ++++A+++lg+ +  
  CCE27738.1 428 MGHEYVELKNTHAAIESYRRAVDVN---RRDYRAWYGLGQTYEM 468
                 79***********************...99999*******9875 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 1.7
      TPR_16   9 ragdyddAaaaleaalkrd 27 
                 + g+  d ++al++al +d
  CCE27738.1 502 KMGREHDGIKALKRALLAD 520
                 6677778888887777665 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.78
      TPR_16  32 daaeAllllgdaalrqgrlaeAa.alyra 59 
                 + a A+++l +a  + +  a+A+ a  +a
  CCE27738.1 564 EEAKAYMELCVAQEEGNATAAALaADANA 592
                 67899999999999999999999665555 PP

  == domain 7  score: 4.6 bits;  conditional E-value: 0.05
      TPR_16  25 krdpssPdaaeAllllgdaalrqgrlaeA 53 
                 +  +++P++  A+++l++ a r  ++a+A
  CCE27738.1 633 EGTGVTPATSKARMWLARFAMRTCDYAAA 661
                 557889****************9999998 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.96     1e+03       7      29 ..     228     250 ..     223     251 .. 0.67
   2 ?    4.2   0.1      0.05        53       8      46 ..     325     362 ..     319     368 .. 0.82
   3 !   12.1   0.1   0.00018      0.19      51      76 ..     394     419 ..     392     420 .. 0.92
   4 !    6.7   0.5    0.0081       8.6       5      61 ..     424     472 ..     420     486 .. 0.63
   5 !    7.5   0.0    0.0048         5       5      32 ..     492     519 ..     490     525 .. 0.89
   6 ?    1.2   0.4      0.45   4.7e+02       8      33 ..     552     577 ..     548     595 .. 0.73
   7 ?   -3.1   0.1       9.3   9.9e+03       3      22 ..     644     661 ..     642     667 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.96
      TPR_12   7 nnlaavlrrlgrydeAlelleka 29 
                 + +++vl++ ++ ++A +++ ++
  CCE27738.1 228 YLYGMVLAKEKNDAQAMDYFMRS 250
                 46777777777777777777665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.05
      TPR_12   8 nlaavlrrlgrydeAlellekaleia.rrllGpdhpltat 46 
                   a++ ++ +++  A++++ + l ++  r+   dh  +++
  CCE27738.1 325 CNALLAYHSKDLMAAEQHFSRLLSLHpHRIDSLDH--YSN 362
                 578999*******************9888888888..444 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00018
      TPR_12  51 LgrlyralgryeeAlelleealaiae 76 
                 +g +y++l  +e+A++++++al +++
  CCE27738.1 394 IGNYYSLLSMHEKAVQYFRRALTLDR 419
                 7999******************9987 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0081
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgry 61 
                 a++ +++ + +l++ + A+e +++a+++ rr     +    ++ ++Lg++y++l+ +
  CCE27738.1 424 AWTLMGHEYVELKNTHAAIESYRRAVDVNRRD----Y----RAWYGLGQTYEMLEMH 472
                 45556666777778888888888888877643....2....3455555555555555 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0048
      TPR_12   5 alnnlaavlrrlgrydeAlellekalei 32 
                 ++  ++++l+++gr ++ ++ l++al +
  CCE27738.1 492 MWMAVGSCLQKMGREHDGIKALKRALLA 519
                 67789********************975 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.45
      TPR_12   8 nlaavlrrlgrydeAlellekaleia 33 
                 ++a+++  lg+ +eA ++ e ++++ 
  CCE27738.1 552 QIAVMYDNLGEEEEAKAYMELCVAQE 577
                 68888999999999999998885544 PP

  == domain 7  score: -3.1 bits;  conditional E-value: 9.3
      TPR_12   3 atalnnlaavlrrlgrydeA 22 
                 a+++  la + +r  +y+ A
  CCE27738.1 644 ARMW--LARFAMRTCDYAAA 661
                 5566..99999999999988 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.023        25       3      34 .]     310     341 ..     309     341 .. 0.95
   2 !    7.3   0.0    0.0064       6.8       2      26 ..     445     469 ..     444     473 .. 0.92
   3 ?   -0.4   0.0       1.8   1.9e+03       1      28 [.     478     505 ..     478     511 .. 0.88
   4 ?    0.4   0.0       1.1   1.1e+03      12      33 ..     546     567 ..     546     568 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.023
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtArq 34 
                 ++ l l P+++ +++  A l ++ +dlm A+q
  CCE27738.1 310 EQLLSLFPTSSFLLTCNALLAYHSKDLMAAEQ 341
                 78999*************************98 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0064
      TPR_17   2 ylkaleldPnnadaynnLAelllkn 26 
                 y++a++ +  +  a++ L+++++++
  CCE27738.1 445 YRRAVDVNRRDYRAWYGLGQTYEML 469
                 99********************876 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.8
      TPR_17   1 lylkaleldPnnadaynnLAelllknGd 28 
                 +y+ka+ l P + + +   + +l k G+
  CCE27738.1 478 YYKKAAGLRPWDGKMWMAVGSCLQKMGR 505
                 699***9*********999999999986 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 1.1
      TPR_17  12 nadaynnLAelllknGdlmtAr 33 
                 ++d+  + A+ + ++G+ ++A+
  CCE27738.1 546 DPDVVLQIAVMYDNLGEEEEAK 567
                 57888899*********99997 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       4.8     5e+03       4      22 ..      84     102 ..      82     103 .. 0.81
   2 ?    6.8   0.1     0.011        11       4      31 ..     228     255 ..     226     255 .. 0.93
   3 ?    0.1   0.0       1.5   1.6e+03      21      33 .]     307     319 ..     298     319 .. 0.88
   4 ?   -1.1   0.0       3.8     4e+03      10      31 ..     330     351 ..     327     352 .. 0.76
   5 ?    3.0   0.0      0.19     2e+02      10      27 ..     397     415 ..     394     417 .. 0.80
   6 ?    2.8   0.0       0.2   2.2e+02      10      28 ..     432     450 ..     424     451 .. 0.84
   7 ?   -1.4   0.1       4.7   4.9e+03       2      13 ..     458     469 ..     457     474 .. 0.84
   8 ?   -0.4   0.0       2.1   2.3e+03       7      26 ..     497     516 ..     494     518 .. 0.87
   9 !    7.5   0.1     0.007       7.3       2      27 ..     549     574 ..     548     577 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.8
                 HHHHHHHHH.HHHHHHHHHH CS
       TPR_6   4 yklalsyrk.lgdtdkAlea 22 
                 y+la+s++    ++d+  + 
  CCE27738.1  84 YLLARSLFDcK-EYDRCAAV 102
                 99*****9988.88887665 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   4 yklalsyrklgdtdkAlealerlikeYP 31 
                 y+ ++ + k ++ ++A++++ r + ++P
  CCE27738.1 228 YLYGMVLAKEKNDAQAMDYFMRSVHKFP 255
                 899******99**********9999998 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.5
                 HHHHHHHHH-TT- CS
       TPR_6  21 ealerlikeYPdS 33 
                 + le+l++ +P+S
  CCE27738.1 307 ASLEQLLSLFPTS 319
                 579********98 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 3.8
                 HHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6  10 yrklgdtdkAlealerlikeYP 31 
                  +  +d  +A + + rl++ +P
  CCE27738.1 330 AYHSKDLMAAEQHFSRLLSLHP 351
                 444348889999******9999 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.19
                 HHH.HHHHHHHHHHHHHHH CS
       TPR_6  10 yrk.lgdtdkAlealerli 27 
                 y++ l  ++kA+++++r +
  CCE27738.1 397 YYSlLSMHEKAVQYFRRAL 415
                 55547789********987 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealerlik 28 
                 y +l++t +A+e ++r ++
  CCE27738.1 432 YVELKNTHAAIESYRRAVD 450
                 78899***********875 PP

  == domain 7  score: -1.4 bits;  conditional E-value: 4.7
                 HHHHHHHHHHHH CS
       TPR_6   2 Alyklalsyrkl 13 
                 A y l++ y++l
  CCE27738.1 458 AWYGLGQTYEML 469
                 89*******986 PP

  == domain 8  score: -0.4 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerl 26 
                 + +++k+g+  + ++al+r 
  CCE27738.1 497 GSCLQKMGREHDGIKALKRA 516
                 78999*99999999999986 PP

  == domain 9  score: 7.5 bits;  conditional E-value: 0.007
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerli 27 
                 + +++a  y +lg+ ++A++++e ++
  CCE27738.1 549 VVLQIAVMYDNLGEEEEAKAYMELCV 574
                 6689*******99*********9776 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.2    0.0034       3.6      58      79 ..      82     103 ..      69     115 .. 0.75
   2 ?   -2.3   0.0         5   5.2e+03      27      49 ..     321     346 ..     310     368 .. 0.60
   3 !   13.6   0.3   5.8e-05     0.061      10      80 ..     375     446 ..     360     448 .. 0.90
   4 ?    3.6   0.0     0.074        78      26      81 ..     459     515 ..     444     516 .. 0.73
   5 ?   -1.0   0.0         2   2.1e+03      21      46 ..     545     570 ..     517     596 .. 0.47
   6 ?   -1.3   0.0       2.4   2.6e+03      22      46 ..     641     665 ..     637     678 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0034
                 HHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  58 crylfAqcllkLkkyeeAiaaL 79 
                 + yl+A++l++ k+y+ + a++
  CCE27738.1  82 SKYLLARSLFDCKEYDRCAAVF 103
                 5677777777777777777665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5
                 HHH...HHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  27 yll...AlclylngqykrAyellrka 49 
                 +ll   Al  y++++   A + ++++
  CCE27738.1 321 FLLtcnALLAYHSKDLMAAEQHFSRL 346
                 55455566666666665555555544 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 5.8e-05
                 HHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  10 flaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 f+a +  + ++ +pe+    +  + l++ +++A +++r+a  l+ + l ++ l+++ +++Lk+ + Ai  + 
  CCE27738.1 375 FVAHLCSSVDKFRPESCVVIGNYYSLLSMHEKAVQYFRRAlTLDRSCLSAWTLMGHEYVELKNTHAAIESYR 446
                 55555556788999*****************************************************98765 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.074
                 HHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  26 ayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                  y l++++  ++ ++  + +++ka +l++ + + ++  + cl k+++ +++i+aL++
  CCE27738.1 459 WYGLGQTYEMLEMHTYSLWYYKKAaGLRPWDGKMWMAVGSCLQKMGREHDGIKALKR 515
                 4445666666666666666777777777778888999999***************86 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 2
                 --HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  21 espedayllAlclylngqykrAyell 46 
                  +p+ ++  A  + ++g+ ++A  + 
  CCE27738.1 545 MDPDVVLQIAVMYDNLGEEEEAKAYM 570
                 23333333344444444444444444 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 2.4
                 -HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  22 spedayllAlclylngqykrAyell 46 
                  ++++++lA    ++ +y  A +l+
  CCE27738.1 641 TSKARMWLARFAMRTCDYAAANRLA 665
                 5678999999999999999997776 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       5.5   5.8e+03      28      44 ..      83      99 ..      75     103 .. 0.83
   2 ?    1.5   0.0      0.41   4.3e+02       4      25 ..     333     354 ..     330     368 .. 0.79
   3 !    7.2   0.0    0.0068       7.2       7      58 ..     404     455 ..     403     462 .. 0.87
   4 !    6.9   0.0    0.0084       8.8       6      35 ..     437     466 ..     432     470 .. 0.89
   5 ?    3.4   0.0       0.1   1.1e+02      13      55 ..     478     520 ..     477     525 .. 0.92
   6 ?    6.3   0.1     0.013        14      24      66 ..     546     588 ..     528     590 .. 0.83
   7 ?    1.8   0.1      0.33   3.5e+02      22      46 ..     639     663 ..     636     671 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.5
      TPR_19 28 rllLAeallalgqldeA 44
                ++lLA+ l+  +++d  
  CCE27738.1 83 KYLLARSLFDCKEYDRC 99
                7999****999999975 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.41
      TPR_19   4 egdyaeAlalleqalqedpkna 25 
                 ++d+ +A ++++++l+  p+  
  CCE27738.1 333 SKDLMAAEQHFSRLLSLHPHRI 354
                 578889*************954 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0068
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 ++ A++++++al+ d   + a+ l+   +++l+++ +A++   ++ + ++ d
  CCE27738.1 404 HEKAVQYFRRALTLDRSCLSAWTLMGHEYVELKNTHAAIESYRRAVDVNRRD 455
                 6789***********************************9999999888886 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0084
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeal 35 
                 +  +A++ +++a + +  + +a+++L + +
  CCE27738.1 437 NTHAAIESYRRAVDVNRRDYRAWYGLGQTY 466
                 6779***********************998 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.1
      TPR_19  13 lleqalqedpknaearllLAeallalgqldeAealLdalpeed 55 
                 ++++a    p ++  +++   +l ++g+  + +++L++++++d
  CCE27738.1 478 YYKKAAGLRPWDGKMWMAVGSCLQKMGREHDGIKALKRALLAD 520
                 58999999999***************************99988 PP

  == domain 6  score: 6.3 bits;  conditional E-value: 0.013
      TPR_19  24 naearllLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                 ++++ l+ A  + +lg+ +eA+a ++   +++  +a +a+L A
  CCE27738.1 546 DPDVVLQIAVMYDNLGEEEEAKAYMELCVAQEEGNATAAALAA 588
                 8999*******************99998888888888888766 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.33
      TPR_19  22 pknaearllLAeallalgqldeAea 46 
                 p  + ar++LA+  + + ++++A +
  CCE27738.1 639 PATSKARMWLARFAMRTCDYAAANR 663
                 667889**************99965 PP

>> DUF3856  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.8   5.1e+03      33      66 ..      76     109 ..      70     120 .. 0.78
   2 ?    3.7   0.1     0.056        59      65     100 ..     391     426 ..     385     455 .. 0.71
   3 !   13.6   0.1     5e-05     0.052      64     126 ..     458     516 ..     454     520 .. 0.94
   4 ?    3.0   0.0     0.094     1e+02      50     122 ..     507     569 ..     506     580 .. 0.75
   5 ?   -1.7   0.0       2.7   2.8e+03       6      41 ..     565     603 ..     561     618 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.8
                 HHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH CS
     DUF3856  33 rkalevsrtipaeeafdheGfdalchaglseala 66 
                  +a e+s+ + a   fd + +d  +   l eal+
  CCE27738.1  76 LEARELSKYLLARSLFDCKEYDRCAAVFLPEALL 109
                 4677899999999999999999888888888765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.056
                 HHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH CS
     DUF3856  65 laklgrydealesadkalryfnrrGeleqdeGklWi 100
                  + +g+y + l+  +ka++yf r   l++   + W 
  CCE27738.1 391 CVVIGNYYSLLSMHEKAVQYFRRALTLDRSCLSAWT 426
                 56789999999999*******998888877666664 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 5e-05
                 HHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
     DUF3856  64 alaklgrydealesadkalryfnrrGeleqdeGklWiaavfsravaleelGrkdealkafrma 126
                 a+ +lg+  e le    +l y+ +   l+  +Gk+W+a+    + +l+++Gr+++ +ka++ a
  CCE27738.1 458 AWYGLGQTYEMLEMHTYSLWYYKKAAGLRPWDGKMWMAV----GSCLQKMGREHDGIKALKRA 516
                 7889********************************997....899************99987 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.094
                 HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHH CS
     DUF3856  50 heGfdalchaglsealaklgrydealesadkalryfnrrGeleqdeGklWiaavfsravaleelGrkdealka 122
                 h+G  al  a l++a+  +g+      s  +a+  f  rG      G++   +v++ av +++lG ++ea  +
  CCE27738.1 507 HDGIKALKRALLADAYYDVGS------SFGSAMDLFGGRGA----TGHMDPDVVLQIAVMYDNLGEEEEAKAY 569
                 999999999999999988874......66777788888874....5666667788888888888888887554 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 2.7
                 HHHHHHHHHHHHHHHHHT-...HHHHHHHHHHHHHHHTT CS
     DUF3856   6 vaeaylalseaekqleega...yeeaaasyrkalevsrt 41 
                  a+ay+ l  a+++ +++a    ++a+as  ++l + + 
  CCE27738.1 565 EAKAYMELCVAQEEGNATAaalAADANASLGESLMIHND 603
                 578999999888765443300145555665555555554 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.2   1.2e+03       6      44 ..     235     273 ..     232     285 .. 0.72
   2 !    6.6   0.2    0.0081       8.6      10      64 ..     301     355 ..     297     358 .. 0.91
   3 !    8.4   0.3    0.0022       2.4      11      61 ..     404     454 ..     397     458 .. 0.93
   4 ?    5.5   0.1     0.018        19      15      57 ..     476     518 ..     462     525 .. 0.87
   5 ?    5.5   0.2     0.018        19      28      70 ..     546     588 ..     542     591 .. 0.88
   6 ?   -2.7   0.2       6.5   6.9e+03      46      70 ..     642     667 ..     640     683 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.2
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGc 44 
                 + e++ ++a+ +  r +  +P  ++ + + + l  +++ 
  CCE27738.1 235 AKEKNDAQAMDYFMRSVHKFPMNWGCWQEMAALITRVEE 273
                 566777788888888888888888888887777666554 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0081
       TPR_9  10 dweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 + + + a +e ll l+P +  ++   +ll +++ +l aA + + + l+l p++ d
  CCE27738.1 301 QTPDLAASLEQLLSLFPTSSFLLTCNALLAYHSKDLMAAEQHFSRLLSLHPHRID 355
                 667778899******************************************9987 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0022
       TPR_9  11 weralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 +e+a ++  r l l+    + +   G  +++l +++aA++   ++++++  
  CCE27738.1 404 HEKAVQYFRRALTLDRSCLSAWTLMGHEYVELKNTHAAIESYRRAVDVNRR 454
                 799*******************************************99865 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.018
       TPR_9  15 lavverllllaPddpeerrdRGlllaqlGclsaAladLeayla 57 
                 l+++     l P d   ++  G +l+++G+ + ++++L ++l 
  CCE27738.1 476 LWYYKKAAGLRPWDGKMWMAVGSCLQKMGREHDGIKALKRALL 518
                 77777778888999999***********************985 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.018
       TPR_9  28 dpeerrdRGlllaqlGclsaAladLeaylalapdapdaeaira 70 
                 dp+ ++  ++++  lG  ++A a +e ++a+++ +++a+a++a
  CCE27738.1 546 DPDVVLQIAVMYDNLGEEEEAKAYMELCVAQEEGNATAAALAA 588
                 66667788999**********************9999999876 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 6.5
       TPR_9  46 saAladLeayl.alapdapdaeaira 70 
                 s+A++ L +++ + ++ a++ +++++
  CCE27738.1 642 SKARMWLARFAmRTCDYAAANRLAME 667
                 56666777777544444444444433 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.8   0.00041      0.43      49      79 ..     662     692 ..     659     695 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00041
     DUF4164  49 sRLaeeLdqaearaarleevnrEvsrrLkaa 79 
                 +RLa+eL q  ++ ++ +++ rEv +rL+aa
  CCE27738.1 662 NRLAMELCQDGVEVEEAKALVREVRSRLEAA 692
                 8****************************98 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.094        99       8      31 ..     394     417 ..     390     420 .. 0.83
   2 ?    0.7   0.1      0.49   5.2e+02      10      34 ..     430     454 ..     427     454 .. 0.80
   3 ?    6.5   0.2    0.0074       7.8       8      30 ..     553     575 ..     551     575 .. 0.93
   4 ?   -1.9   0.3       3.3   3.5e+03       4      29 ..     660     686 ..     659     692 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.094
      TPR_10   8 LanalrqrgrydeAealleealai 31 
                 ++n+++ +  +++A++++++al +
  CCE27738.1 394 IGNYYSLLSMHEKAVQYFRRALTL 417
                 577777777799*********975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.49
      TPR_10  10 nalrqrgrydeAealleealairrr 34 
                 + + ++++ ++A + +++a+++ rr
  CCE27738.1 430 HEYVELKNTHAAIESYRRAVDVNRR 454
                 5677888999999999999998776 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0074
      TPR_10   8 LanalrqrgrydeAealleeala 30 
                 +a+++ ++g+ +eA a++e ++a
  CCE27738.1 553 IAVMYDNLGEEEEAKAYMELCVA 575
                 799****************9986 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 3.3
      TPR_10   4 slnNLanalrqrg.rydeAealleeal 29 
                 + n La+ l+q g + +eA al +e+ 
  CCE27738.1 660 AANRLAMELCQDGvEVEEAKALVREVR 686
                 667777777666535666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 4471.77
//
Query:       CCE27739.1  [L=1052]
Description: uncharacterized protein CPUR_01213 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-05   24.6   0.4    6.1e-05   23.5   0.4    1.5  1  PH        PH domain
  ------ inclusion threshold ------
        2.7    5.0   9.5        5.4    4.0   9.5    1.4  1  GREB1     Gene regulated by oestrogen in breast cancer
        2.8    7.5  15.8        6.3    6.3  15.8    1.5  1  Spt20     Spt20 family


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.4     1e-08   6.1e-05      10      98 ..     505     605 ..     497     609 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1e-08
                 ETSSSSCSEEEEEEEEETTE.EEEESST.TCTTESSEEEEEESTTEEEEEEEC....TT.SSSSTSEEEE.......EESTSSSTEEEEEEESSHHHHH CS
          PH  10 kgsgkkkswkkrwfvLkdse.llyyknd.ksekdkepkgsislsncevvevva....te.dpkrkfcfel.......riverngsrtyllqasseeerk 94 
                  +s+++ +wkkrw++L d+  +++ k+    + dk+     +l++ ++  +++     + +p+++fc+++       +++  +++ ++++++++++ + 
  CCE27739.1 505 HSSKPG-KWKKRWVTLLDNGqMYVAKSIsTQPYDKDCSILCHLTDFDIYTPKEsevrRKlRPPKRFCYAIkslektvVFSS-TEKFVHFFSTEDAQQAA 601
                 233444.**********8883555555555555555555556666666666659999556**********66665533332.2259********99998 PP

                 HHHH CS
          PH  95 eWik 98 
                 ++ +
  CCE27739.1 602 SFFE 605
                 8876 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   9.5    0.0009       5.4    1167    1264 ..     793     893 ..     744     900 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0009
       GREB1 1167 kselseasaaaasaseeakspkasvtseeeeseeskekekeslsketesqls...leaseqkealdakasskssssssssssassPssscslakavk 1260
                  + ++++a++     + ++  p+a+ +s ++  +++ e+++++l++++++q +   ++ ++q+  +++ ++++ s+s+s ++ assPs s  + +  +
  CCE27739.1  793 RHAMKQAEKDERKDEPKSWFPSAAEHSARTRYTHQREQQQQQLQQRQQQQQQrqhQQYQSQRRPMPTDRRASFSPSTSATAAASSPSISGCMPRRDR 889 
                  2222222222222222333344333344333333333333333332222222000233445556666788888999999999999998888887777 PP

       GREB1 1261 rPpi 1264
                  +Pp 
  CCE27739.1  890 HPPP 893 
                  7764 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  15.8    0.0011       6.3     111     150 ..     821     864 ..     790     884 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0011
       Spt20 111 q....qnqqqqqqqqqqqqqqqqqqeqqqqqnekdsttteekek 150
                       + +qqqqq qq qqqqqq++ qq q++ +   t+ +  
  CCE27739.1 821 RtrytHQREQQQQQLQQRQQQQQQRQHQQYQSQRRPMPTDRRAS 864
                 03433222222222222222222223333333332222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1052 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2363  (0.131798); expected 358.6 (0.02)
Passed bias filter:                      969  (0.0540465); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.52
# Mc/sec: 6094.12
//
Query:       CCE27740.1  [L=327]
Description: related to methionine adenosyltransferase regulatory beta subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-51  173.6   0.0    5.6e-51  173.3   0.0    1.0  1  RmlD_sub_bind    RmlD substrate binding domain
    1.3e-20   73.9   0.0    1.7e-20   73.5   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    3.2e-09   36.7   0.0    6.3e-09   35.7   0.0    1.5  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    9.2e-07   28.3   0.1    0.00025   20.3   0.0    2.9  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.3e-06   27.8   0.2    0.00047   19.4   0.0    2.4  2  NAD_binding_4    Male sterility protein
    0.00016   20.8   0.0    0.00039   19.5   0.0    1.6  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
  ------ inclusion threshold ------
       0.12   11.9   0.2        8.9    5.8   0.1    2.4  2  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.3   0.0   2.2e-54   5.6e-51       2     269 ..       9     308 ..       8     326 .. 0.84

  Alignments for each domain:
  == domain 1  score: 173.3 bits;  conditional E-value: 2.2e-54
                    EEEEESTTSHHHHHHHHHCTT.TSEEEEEE-TT........T--T..TSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlae.eglevlaltre........eldl..tdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaeavealA 86 
                    + lvtGa+G+lG+e++ ++++  ++ v +++ +        ++dl  +da+ +++ll +++pdvvv+aAA +  Dk+ +++eaa a+n ea+e+lA
     CCE27740.1   9 RALVTGATGLLGREIVSAFRRsPDWVVKGTGHSradgvdvlRMDLltEDAAGLDKLLTKIQPDVVVHAAAQRFPDKVDQDPEAARALNTEASERLA 104
                    679****************984688888886667899999955552278999******************************************** PP

                    HHHHHCT-EEEEEEEGGGS-S-.TTS-B-TTS----SSHHHHHHHHHHHHHHH......H-SSEEEEEE-SEESS......SSS-.HHHHHHHHHH CS
  RmlD_sub_bind  87 eaaaavgalLihvStDyVFdGe.kkrpYeeddetsPlnvYGrtKlaGEqavla......agkkalivRtswvyge......kgkn.fvktmlrlak 168
                    +a  ++g +Li++StDyVF+G   + pYe +++t P ++YG+tKl+GE+avl+      ++  ++++R++++yg+      +  n +++ + + ++
     CCE27740.1 105 QAVLSRGLVLIYISTDYVFPGVpGDAPYEVNATTRPTTLYGQTKLDGENAVLDvaeemdKVGSVVVLRVPVLYGHaetpaeSAINvLMESVWKAQT 200
                    *********************966777************************9977766666789*********99666544222313344445557 PP

                    H-SEEEEESS-EE--EEHHHHHHHHHHHHHHCHH.GGG......-EEEE---BS-EEHHHHHHHHHHHHCHTTSEEEEE-C.CCS--SS---SBE- CS
  RmlD_sub_bind 169 ereelkvvaDqlgsPTsardlAevllqllekaaeekel......agvyHlanegetswlefArailkeagadseevkpist.aeyptpAkRPanSv 257
                    e  ++ + ++ ++ PT ++d+A+v+ ++++k +e+ +         v+H+++e++++++e+ +   k +g d   ++p ++ ++ ++   RP +  
     CCE27740.1 201 EGTKILMDDWGIRYPTNTEDVARVCRDIAAKYVETDAEsdrkalPPVLHFTSEDKMTKYEICQLFGKIMGLDVGSIEPNTKgNDRNALVIRPYDCH 296
                    8888999999999****************99887655455666789*******************************9755266777789****** PP

                    B--HHHHHCCT- CS
  RmlD_sub_bind 258 Ldtekleatfgi 269
                    L+t+++++ ++ 
     CCE27740.1 297 LSTTETKKLGID 308
                    ******998643 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   6.6e-24   1.7e-20       1     221 [.      10     224 ..      10     240 .. 0.79

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 6.6e-24
                 EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHCEEEE--TT-HH..HHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledlelveldltdrs..alerlfkeeqpdavihlAavggvaassedpadfieknlqgtl 96 
                 +lVtGatG++G+ +v a+ +   + v g  +        r + +++ ++dl+ ++   l++l+ + qpd+v+h+Aa+  ++   +dp++    n++ + 
  CCE27740.1  10 ALVTGATGLLGREIVSAFRRSPdWVVKGTGHS-------RADGVDVLRMDLLTEDaaGLDKLLTKIQPDVVVHAAAQRFPDKVDQDPEAARALNTEASE 101
                 59*****************9984445555555.......56667889999988774479**************************************** PP

                 HHHHHHHHHTCTEEEEEEEGGGGTSCSSS.SBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT..-EEEEEEESEEESTT.S-TTSTTSHHHHHHH CS
   Epimerase  97 nlleaarkagvkrllflsSsevYGkdaeq.pkeettltgplkpnspYaaaKlageklveayaaqyg..lnaiilrlfnlyGpr.ngegevsrvipalir 191
                 +l++a+  +g+  l+++s++ v++ ++   p e ++    ++p++ Y+ +Kl ge+ v ++a++ +   ++++lr+  lyG   ++ ++  +v+   + 
  CCE27740.1 102 RLAQAVLSRGL-VLIYISTDYVFPGVPGDaPYEVNA---TTRPTTLYGQTKLDGENAVLDVAEEMDkvGSVVVLRVPVLYGHAeTPAESAINVLMESVW 196
                 ***********.************999955877777...779**********************9444799**********993333334444444444 PP

                 HHHTTSSSEEEETTST-EEEEEEHHHHHHH CS
   Epimerase 192 kilegkqevtllgdgtalRdflyveDvaea 221
                 k++++    ++l d    R     eDva++
  CCE27740.1 197 KAQTE--GTKILMDDWGIRYPTNTEDVARV 224
                 44333..34444455555555555555555 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   2.4e-12   6.3e-09      55     170 ..      47     161 ..      11     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 2.4e-12
                    EEEE--T..T-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG.-S-SSSSB-TTS-- CS
  GDP_Man_Dehyd  55 klhkgDl..tDssslerllaevqpdevynLAAqshVdvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvY.GkvqevpqtEttpf 147
                     + ++Dl  +D++ l++ll ++qpd v++ AAq + d+  ++Pe+    n  +  rL +a+ + gl     ++ +St+ v+ G + ++p++ +  +
     CCE27740.1  47 DVLRMDLltEDAAGLDKLLTKIQPDVVVHAAAQRFPDKVDQDPEAARALNTEASERLAQAVLSRGL----VLIYISTDYVFpGVPGDAPYEVNATT 138
                    555666543699*************************************************87765....799********77778********** PP

                    ---SHHHHHHHHHHHHHHHHHHH CS
  GDP_Man_Dehyd 148 yPrsPYaaaKlyadwivvnyrea 170
                    +P+  Y+ +Kl  +  v +  e+
     CCE27740.1 139 RPTTLYGQTKLDGENAVLDVAEE 161
                    ***********999998887776 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0098        25       2      18 ..      11      27 ..      10      35 .. 0.87
   2 !   20.3   0.0   9.6e-08   0.00025      65     156 ..      57     162 ..      48     179 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0098
                     EEETTTSHHHHHHHHHH CS
  Polysacc_synt_2  2 lvtGagGsiGselvrqi 18
                     lvtGa+G +G+e+v+ +
       CCE27740.1 11 LVTGATGLLGREIVSAF 27
                     8************9876 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 9.6e-08
                      -HHHHHHHTT..T-SEEEE------HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEG...............GGSS--SHHHHHHH CS
  Polysacc_synt_2  65 dkerlekaleelkvdvvfhaAAlKhVPlveenpleaiktNvlgtenvieaaieagvkkvvliStD...............KAvnPtnvmGatKr 143
                      d++ l+k+l+++++dvv+haAA +    v++ p  a   N  ++e +++a ++ g   +++iStD                  +Pt ++G tK+
       CCE27740.1  57 DAAGLDKLLTKIQPDVVVHAAAQRFPDKVDQDPEAARALNTEASERLAQAVLSRGL-VLIYISTDyvfpgvpgdapyevnATTRPTTLYGQTKL 149
                      778899********************************************999997.589*****33332222222222112467777777777 PP

                      HHHHHHHHGGG-- CS
  Polysacc_synt_2 144 laekllqalakes 156
                        e  +  +a+e 
       CCE27740.1 150 DGENAVLDVAEEM 162
                      7777777776666 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.1     0.002       5.1       1      18 [.      12      29 ..      12      46 .. 0.83
   2 !   19.4   0.0   1.8e-07   0.00047      88     224 ..      70     194 ..      43     210 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.002
                   EE-TTSHHHHHHHHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLr 18
                   +TGaTG LG+ ++    r
     CCE27740.1 12 VTGATGLLGREIVSAFRR 29
                   7**********9987655 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.8e-07
                    --EEEE--SS-...S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHH CS
  NAD_binding_4  88 vdviihsaAtv...nfdepykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsK 180
                     dv++h aA+    ++d++ + +++ N+e+ +++ +     + l vl+++ST yv +   g                   e +  +  ++ Y q+K
     CCE27740.1  70 PDVVVHAAAQRfpdKVDQDPEAARALNTEASERLAQAVL-SRGL-VLIYISTDYVFPGVPGD---------------APYEVNATTRPTTLYGQTK 148
                    59*******8544477888899**********9999777.6688.9******9999999974...............45677888888999***** PP

                    HHHHHHHHHHHHHH---..EEEEEE-EEE--SSST---TTSHHHHH CS
  NAD_binding_4 181 alaEklvrearrrsglp..vvivRpsiitgesktGwingsdlgirg 224
                      +E+ v + +++ +    vv++R+++++g+ +t +    +++++ 
     CCE27740.1 149 LDGENAVLDVAEEMDKVgsVVVLRVPVLYGHAETPAESAINVLMES 194
                    *****999888654433448**********8887666655555555 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.5e-07   0.00039       1     209 [.      11     204 ..      11     262 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.5e-07
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag.kltedeimkvnvkGTrn 98 
                 +vtG++G lGr++v+++ r  + + v+       + +      ++++ +++ D    dkl   ++  dvv+h a+     +  +  +     n +  + 
  CCE27740.1  11 LVTGATGLLGREIVSAFRRSPD-WVVKGTGHSRADGV----DVLRMD-LLTEDAAGLDKLLTKIQ-PDVVVHAAAQRFPDKvDQDPEAARALNTEASER 102
                 69*************9977765.66665444333333....333333.56666666666665554.489999988777666345566777889999999 PP

   3Beta_HSD  99 vleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkllvpllkqla 197
                 + +a ++ g+ vl+Y S+ + v+p + g++      e +  + ++  y ++K   E++vl   +++ k g     + LR  ++yG  ++  + +++ l+
  CCE27740.1 103 LAQAVLSRGL-VLIYIST-DYVFPGVPGDAPY----EVNATTRPTTLYGQTKLDGENAVLDVAEEMDKVG---SVVVLRVPVLYGHAETPAESAINVLM 192
                 9999999887.89***97.8899966666666....677777899****************999555555...5689*********9999988888777 PP

   3Beta_HSD 198 klglalfkigde 209
                  +  +    g +
  CCE27740.1 193 ESVWKAQTEGTK 204
                 766444444444 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0035       8.9       2      20 ..      11      29 ..      10      39 .. 0.86
   2 ?    3.7   0.0     0.015        39     161     229 ..     204     273 ..     188     274 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0035
                EESSTTSHHHHHHHHHHHH CS
        NmrA  2 lviGaTGrqGksvvrallk 20
                lv+GaTG +G+ +v+a+ +
  CCE27740.1 11 LVTGATGLLGREIVSAFRR 29
                79************99865 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.015
                 -TTS.-EEEEESS-TTS-EE-HHHHHH.HHHHHHHHHHHHH.TTEEEEE-SEEE-HHHHHHHHHHHHTS-E CS
        NmrA 161 appedkvtllgpgnpkavlldaeeDiG.afvikilkdprkl.kgkriklagntlsgneivelfekkigktv 229
                 +  +d + +  p n++ v     +Di+ ++v   ++  rk+   +    +++ ++  ei++lf k +g  v
  CCE27740.1 204 KILMDDWGIRYPTNTEDVAR-VCRDIAaKYVETDAESDRKAlPPVLHFTSEDKMTKYEICQLFGKIMGLDV 273
                 45556777888888877777.67777625666555555555377777788999************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2232.26
//
Query:       CCE27741.1  [L=479]
Description: related to microfibril-associated protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-69  231.9  27.5    7.3e-69  231.9  27.5    2.2  2  MFAP1          Microfibril-associated/Pre-mRNA processing
  ------ inclusion threshold ------
       0.07   12.9   2.3       0.11   12.2   2.3    1.2  1  ETX_MTX2       Clostridium epsilon toxin ETX/Bacillus mosquit
        1.4    9.3   5.4        4.6    7.6   5.4    1.8  1  A_deaminase_N  Adenosine/AMP deaminase N-terminal


Domain annotation for each model (and alignments):
>> MFAP1  Microfibril-associated/Pre-mRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   9.6      0.25   1.5e+03      27      94 ..      69     134 ..      57     135 .. 0.62
   2 !  231.9  27.5   1.2e-72   7.3e-69       1     217 []     130     351 ..     130     351 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.25
                 X...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXS-SSSSHHHHHH CS
       MFAP1  27 ekeaeeeeeeeeeeeekkeeeerkkeakklveeeirkeaeakeaedeeeeeaedvddtDeldpeaeye 94 
                 +++++e+  +e++++++++++er ++a   v ++ ++++++++++ e+ +  ++ +++De ++e e e
  CCE27741.1  69 ASKRNEALLAEQRRTAAAAKAERLAAASGFVTASEEESEDDSQNDGESGS--SEQESSDEEEEESEEE 134
                 45566666677777777778888888888888776666665555444444..4444444444555544 PP

  == domain 2  score: 231.9 bits;  conditional E-value: 1.2e-72
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXX.XXXXS-SSSSHHHHHHH CS
       MFAP1   1 sseeeepkrkllkPvFvpkskRetiaekeaeeeeeeeeeeeekkeeeerkkeakklveeeirkeaeakeae....deeeeeaedvddtDeldpeaeyea 95 
                 +seee+p+r +l+P+Fvpks+R + a      + e+++e+  +++e+++kk+a++lvee+irk+ +a++a+    d++e+ +++vd+tD+ldp+ae +a
  CCE27741.1 130 ESEEEAPRRLMLRPKFVPKSQRGKDAL-----DLEKQQEAAFEAQEAAKKKAADALVEEQIRKDLAARAAGkkhwDDDENPDSEVDTTDGLDPAAEEAA 223
                 68999*****************98777.....444555555566667899*****************999955444444445***************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHX.XXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX.XXXX CS
       MFAP1  96 WklReLkRikrdreereerekekeelerrrnlteeereaedrellkkqr.ekeekgkmkfmqkYyhkGAFfqd.eeeeellkrdlsaatledkv.dkel 191
                 W++ReLkR+kr+re++ee+e+e +e+errrnlteeer+aed+++l+kq+ ek++kgkm+fmqkY+hkGAFfq+ +++++ll+rdl++ +++d+v ++e+
  CCE27741.1 224 WRVRELKRLKRSREAIEEKERELAEVERRRNLTEEERQAEDEAFLAKQQdEKDSKGKMSFMQKYHHKGAFFQEeAAAAGLLQRDLMGTRIADDVrNREA 322
                 ********************************************999999**********************98999********************** PP

                 XXXXXXXXX...XXXXXXXX......... CS
       MFAP1 192 LPkvmqvrd...fGkkgrtKYthLkdeDT 217
                 LP+++q rd   +Gkkg+tKY+++++eDT
  CCE27741.1 323 LPAYLQKRDmtkLGKKGATKYRDMRSEDT 351
                 ****************************9 PP

>> ETX_MTX2  Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.3   1.8e-05      0.11      62      99 ..     424     459 ..     420     474 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
                 EEEEEEE-EEEEEEEEEEEEETTTS-EEEEEEEEECTT CS
    ETX_MTX2  62 tvthGfkigakasgkvkipfvaeggvtlsvtgeYNfss 99 
                 tvt ++k+++k++++++++++ e +++++v +e +  +
  CCE27741.1 424 TVTVTVKVKVKVTFTFTAKATGEIEIEVDVKIENS--T 459
                 89999*************************98753..3 PP

>> A_deaminase_N  Adenosine/AMP deaminase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.4   0.00077       4.6      20      83 ..     230     297 ..     220     300 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00077
  A_deaminase_N  20 edYetqReallekEeql.slGgnleLnekEeqaNeilmaikqeela...eglrnpknfkpakhfFkak 83 
                    ++ ++ Rea+ ekE++l ++  + +L+e+E qa++    +kq++++     +++ ++++ +  fF+++
     CCE27741.1 230 KRLKRSREAIEEKERELaEVERRRNLTEEERQAEDEAFLAKQQDEKdskGKMSFMQKYHHKGAFFQEE 297
                    577999********8863689999*********88766677776654545688999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1948  (0.108651); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.34s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 3066.70
//
Query:       CCE27742.1  [L=657]
Description: related to POL12 (DNA-directed DNA polymerase alpha) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-79  267.4   0.0    2.2e-79  266.9   0.0    1.2  1  Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
    1.9e-39  135.2   0.0    2.7e-39  134.7   0.0    1.2  1  DNA_pol_E_B    DNA polymerase alpha/epsilon subunit B


Domain annotation for each model (and alignments):
>> Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.9   0.0   2.4e-83   2.2e-79       1     246 []      18     246 ..      18     246 .. 0.91

  Alignments for each domain:
  == domain 1  score: 266.9 bits;  conditional E-value: 2.4e-83
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX........XXXX...XXXX CS
  Pol_alpha_B_N   1 pdvlseleslmklhalsvedLfiKWEsfsikmkleeskkltlknlrefkkdlqdqlekraksskkpktekksaaatpraaakngdlfgmldglips 96 
                    +dvl e++s+++lh+lsv+dLf+KW++++i+m+l+++++l+l n+r++k+ +qd+lek ++++++ + e+++ +a pr   ++gd+fgmldgl+ps
     CCE27742.1  18 QDVLYEIQSILRLHDLSVDDLFFKWDAYCIRMDLDAQSALSLPNIRNLKHSIQDELEK-SHRATQVRGERRV-NAAPR-GVSGGDVFGMLDGLVPS 110
                    69********************************************************.5455899999999.****7.78899************ PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX..XXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Pol_alpha_B_N  97 tpalkkrklssakrksafetpsrskssssklefsspeasktpasaekksesseglpsvsfsdrqnpgeiletLNehlelaegpiapfselesrvkl 192
                    tpal  r ++   r          + s+ k++++  + +++pa ++++ ++++glps+sf+dr+npg+i+e+LN hl++a +p+apfse  +r+kl
     CCE27742.1 111 TPALASRAAN---R---------GSGSELKRKMGGLKVNSSPAGMSDQLKAMNGLPSSSFADRANPGDIVEVLNGHLAAAAAPVAPFSE--PRIKL 192
                    ***9777665...1.........1122333333444445556889999*****************************************..***** PP

                    XXXXXXXXXXX--S---HHHHHHHHHHHHHHHHHHHHHHHT--GGGB--TTS-- CS
  Pol_alpha_B_N 193 taatDpkkykYrtMaqklsEasevLDdrIdefaeliqehyklddsefgdpalqs 246
                    taa+D+kk++Y+++a+klsEase+LDdrIdef++++q+ ++ldds+fg++a+qs
     CCE27742.1 193 TAASDQKKMAYKPLAMKLSEASEILDDRIDEFMTIVQDYHQLDDSAFGSAASQS 246
                    *****************************************************8 PP

>> DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7   0.0     3e-43   2.7e-39       1     211 []     360     603 ..     360     603 .. 0.98

  Alignments for each domain:
  == domain 1  score: 134.7 bits;  conditional E-value: 3e-43
                  EEEEES--S-TT----HHHHHHHHHHH.HTT--SEEEEES-SSBTTSHHHHHT---.........S--SSHHHHHHHHTHHHHTTS-...TTSEEEEE CS
  DNA_pol_E_B   1 vvivsglnldndnrsleaLrkiLqgyapeesppdvlilaGnfvdaahkaiasskvs.........tdekkenfdalalllsilesll...ekttvvlv 86 
                  +++++g+++++dn+++e+L+ + + +a  ++  d+l+l+G+f+d++h++ia+++++          d+++ ++ +  l+ ++l + +   ++ tv+lv
   CCE27742.1 360 ILFAAGPYTADDNLDYEPLHALCSQAA--DTYADALVLTGPFIDINHPLIATGDFDlpeeaatidPDTATMSTMFRYLFAAALTRACasnPHLTVILV 455
                  689************************..************************************99*******************9999******** PP

                  --TTBTT-S.-SBSB----TTTTT--TTT...EEE--BSEEEEETTEEEEE--S-HHHH---EEESHHHH........HS-HHHHHHHHHHHHTBS-- CS
  DNA_pol_E_B  87 PgpnDpans.tvlPqqPlprlllsrikrvfkelklvtNPsrielnsvevvltsddivkdlkreslkesnt........dverlrklvktildqrhlaP 175
                  P+++D   + +++Pq++l r+ l  +k+    +k+v+NP+++++n++ ++l+s+di+++l+ e+l++ ++          + + +l +++++qrh++P
   CCE27742.1 456 PSTRDILAKhVSWPQDSLSRKELGLPKS----AKIVSNPMTLSMNEMVIGLSSQDILYELRSEELSRVTSaptsaggpGGDLMGRLCRYLIEQRHYFP 549
                  ******9999*****************9....79**************************************************************** PP

                  -SS...................--B-GGGGGGGB-GGG---SEEE---SS--EEE CS
  DNA_pol_E_B 176 lap...................tlrpvswdkddalvleplPdvlvlpdelpeFak 211
                  l+p                   ++++v +  + ++v +  Pdv+v+p++lp+Fak
   CCE27742.1 550 LFPptdrarlprtgteqgvatgAVVDVAYMRLGEMV-NVRPDVMVVPSSLPPFAK 603
                  ************************************.****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4899.92
//
Query:       CCE27743.1  [L=366]
Description: uncharacterized protein CPUR_01217 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.14   12.0   2.4       0.21   11.5   0.9    2.1  2  pPIWI_RE_Z       pPIWI RE three-gene island domain Z
       0.15   12.4   0.4        4.4    7.7   0.0    2.4  2  Methyltransf_FA  Farnesoic acid 0-methyl transferase


Domain annotation for each model (and alignments):
>> pPIWI_RE_Z  pPIWI RE three-gene island domain Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.16   1.4e+03     116     137 ..     120     141 ..      73     169 .. 0.58
   2 ?   11.5   0.9   2.3e-05      0.21      57      86 ..     187     216 ..     172     264 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.16
  pPIWI_RE_Z 116 lLsapppfatrkvkvAeaGrye 137
                 + s+++p+ +++  +A++ r++
  CCE27743.1 120 IYSTVVPYLQHTCCLAKQPRQQ 141
                 3455555555555555555555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 2.3e-05
  pPIWI_RE_Z  57 anaRhllwelrsrraweealeaYrelperl 86 
                 a++R+ l ++rs++aw  +l++Y++   + 
  CCE27743.1 187 ARYRAALKPMRSPKAWHTWLSEYEQASHDA 216
                 799*********************964444 PP

>> Methyltransf_FA  Farnesoic acid 0-methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00049       4.4      12      60 ..      94     144 ..      87     167 .. 0.75
   2 ?    2.3   0.2     0.024   2.2e+02      27      48 ..     301     322 ..     296     346 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00049
  Methyltransf_FA  12 dsdemyeIviGgwgNtksairrqkrg..nevvevstpgllsedefrkfwis 60 
                        +e+yeI i +  N +  ir  ++   ++vv   ++  + ++++r+ w++
       CCE27743.1  94 RLSEIYEIEIDAYWNEQDNIRHMTQLiySTVVPYLQHTCCLAKQPRQQWLA 144
                      4567******************99988777777777777777788887775 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.024
  Methyltransf_FA  27 tksairrqkrgnevvevstpgl 48 
                      t+s irr+++gn+ ++   +++
       CCE27743.1 301 TRSRIRRKRQGNQASKTGGHQM 322
                      99*********76655555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2754.06
//
Query:       CCE27744.1  [L=307]
Description: uncharacterized protein CPUR_01218 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2368.43
//
Query:       CCE27745.1  [L=1335]
Description: uncharacterized protein CPUR_01219 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.2   11.3  10.2       0.49   10.0   2.3    2.6  2  GATA      GATA zinc finger


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.3   2.8e-05      0.49       1      14 [.     866     879 ..     866     886 .. 0.93
   2 ?    5.2   1.1   0.00087        16      21      29 ..     938     946 ..     934     952 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 2.8e-05
        GATA   1 CsnCgttkTplWRr 14 
                 C nCg+++Tp WR+
  CCE27745.1 866 CCNCGAIETPTWRK 879
                 99***********7 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.00087
        GATA  21 sLCnaCGly 29 
                  LCn+CG+ 
  CCE27745.1 938 LLCNPCGIW 946
                 6******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 9139.07
//
Query:       CCE27746.1  [L=218]
Description: related to cytochrome b-large subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-17   62.1   1.5    6.8e-17   61.6   1.5    1.2  1  Sdh_cyt   Succinate dehydrogenase/Fumarate reductase transmem


Domain annotation for each model (and alignments):
>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   1.5   3.8e-21   6.8e-17       2     114 ..      91     208 ..      90     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 3.8e-21
     Sdh_cyt   2 rknrplsphlqlyrlp.lgawlsilhritGvallvglllllvwlllalslsspesfarvvallas...piklilllllllallyHllnGiRhllwDlgl 96 
                 r nrp+ phl +y +  +    s  +ritG+al +++++++ ++ll+++++ + + a++v+ +a+    + +++ +ll+++l +Hl+nG+R l+ D+g+
  CCE27746.1  91 RVNRPVAPHLEVYDIGqTYLGSSAWMRITGCALSGVTYIFFSAYLLVPLVGWHLDSAALVSAFANlpfAVSSAVKFLLAFPLSFHLANGVRQLCYDVGV 189
                 679***********97355666788**********77777778899999**********9999999886666777************************ PP

     Sdh_cyt  97 gl.elesarksalavlala 114
                 g+ +   a++  ++++a++
  CCE27746.1 190 GFaKTTIAKAEYAVWTAGV 208
                 **66666667778887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1584.88
//
Query:       CCE27747.1  [L=206]
Description: uncharacterized protein CPUR_01221 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-12   47.7   0.3    3.3e-12   47.2   0.3    1.3  1  Hemerythrin  Hemerythrin HHE cation binding domain


Domain annotation for each model (and alignments):
>> Hemerythrin  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.3   1.8e-16   3.3e-12       4     131 .]       6     123 ..       3     123 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 1.8e-16
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH...CCC.HHHHHHHHHHHHHHHHHHHHHHHHCHTCGG CS
  Hemerythrin   4 ealdeeHralrallerlraladaaaevhgalrklaelldelvdeleaHhaaEEellfPlle..drpggravldvlereHdeirelleelrellkglee 99 
                   a++++Hr+l a  +++    ++        +  +++ + +v+el++H   EE +++P+le    + g ++ ++ + eH+   e+l+e+++l ++ + 
   CCE27747.1   6 SAVTKDHRELEAYYNEVINNPND-------HDHQQRYGNMFVWELARHSVGEELVVYPALEnyLGAKGVEMAKSDRDEHHTTKEMLKEFQQLSASDS- 95 
                  678999*********98877877.......788899999**********************999999999999999**************9999999. PP

                  STCHHHHHHHHHHHHHHHHHHHHHHHTHHHHH CS
  Hemerythrin 100 psaaafaelleeladllreHiakEesilfpll 131
                          +l+++ + l  Hi++Ee+  +p+l
   CCE27747.1  96 ----RYVPQLKKIWTPLSAHIKQEEERDLPAL 123
                  ....7888******************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1591.32
//
Query:       CCE27748.1  [L=173]
Description: uncharacterized protein CPUR_01222 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1439.25
//
Query:       CCE27749.1  [L=576]
Description: related to enoyl-CoA-hydratase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.3e-121  404.5   4.2    1.6e-94  317.2   0.0    2.1  2  ECH_2     Enoyl-CoA hydratase/isomerase
    1.7e-24   86.5   0.7      2e-22   79.8   0.0    2.4  2  ECH_1     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.2   0.0   1.7e-98   1.6e-94       2     256 ..      36     298 ..      35     319 .. 0.88
   2 !   83.5   7.2   2.2e-27     2e-23     153     328 ..     302     475 ..     292     483 .. 0.65

  Alignments for each domain:
  == domain 1  score: 317.2 bits;  conditional E-value: 1.7e-98
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS..-THH.HHHHHHHHHHHHHHHC-SS-EEEEE-BE CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakeg..kkee.eeffreeYklnyliatypkpvvalmdGi 97 
                 ++i+Lnrpk+lN+L+ +m+r++ +++ ewek+d +++v+lkgag++a+CAGgDv+al++ ++eg   +++ ++ff+ eYkl ++iaty+kp+valmdG+
  CCE27749.1  36 RTIILNRPKQLNSLNGSMIRKIVPRMIEWEKSDMANIVLLKGAGDRALCAGGDVAALAKLNQEGpnGWKKsADFFALEYKLMHYIATYKKPYVALMDGV 134
                 79**************************************************************66333359*************************** PP

                 EETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSSTTHHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT......... CS
       ECH_2  98 vmGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpgelGlylalTGarlkgadalaaglathyvpseklealeeaLaelessd..... 191
                 +mGgGvGls+h++fr++te+tvfAmPEt+IG+fPDvG+s+fL+rl+g++G+ylalT++rl g ++++ g+athy++s++l++le++Lael+++d     
  CCE27749.1 135 TMGGGVGLSMHAPFRIATEKTVFAMPETTIGFFPDVGASFFLPRLNGAMGTYLALTSDRLIGPNVFYSGIATHYLHSTSLPDLEARLAELSFRDddemp 233
                 *******************************************************************************************99988877 PP

                 ......--------......----SHH.HHHHHHHHHT.-S-TTTHHHHHH.T..--SHHHHHHHHHH CS
       ECH_2 192 ..eeaveevleelaeeaeeeeeesela.ekreaidrlfsadsveeiveaLekaeaeedewakktletl 256
                    + ++++lee+ +  + +++  +l+ + r++idr+fs+++v++iv+aL++++  + ++ ++t +t+
  CCE27749.1 234 rkLAVINNTLEEFCTGLPYDQP-IQLRgAIRKTIDRCFSKNNVADIVAALKEEA--TVPVEEQTGATV 298
                 7666777777777777666555.444336899******************9632..344555544444 PP

  == domain 2  score: 83.5 bits;  conditional E-value: 2.2e-27
                 H---B-HHHHHHTTS--EE--GGGH.HHHHHHHHTT.........--------......--.--SHHHHHHHHHHHT.-S-TTTHHHHHH......T.. CS
       ECH_2 153 TGarlkgadalaaglathyvpsekl.ealeeaLaelessd.eeaveevleelaeeaeeeee.eselaekreaidrlfsadsveeiveaLek.....aea 243
                 TG++++++ a+a++  t   ++++   a+ee+  ++ +++ ++avee   +  ee+ +  e e++  ++++++d +f +++ +       +      +a
  CCE27749.1 302 TGTTVEEQTAVAVEEQTDAGSEQQSgVAVEEQTNAAVEEQtDSAVEEQTGAAVEETGAAMEeEFDA-ASEDEMDVAFLREQRK-------TapkknWKA 392
                 555555555555554444444444313333333333222233344443333333333322212222.3555566666444333.......133333345 PP

                 --SHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTTS-------SSSSGGG--HH CS
       ECH_2 244 eedewakktletlkkrsPtslkvtleqlrrgrklsslaevlrmElrlalrllaekDfveGvrallvdkdkkPkWkpatleevtde 328
                 ++++wa+ktl+tl++rsPt+++v+l+q+r g ++ ++ae++++E+++a+++++++Df+eGv+allv k ++PkWk+++l+ v+++
  CCE27749.1 393 KTQKWAEKTLSTLQQRSPTAVHVALRQMRLGGDW-DIAETFKREHQIASKFMQHPDFTEGVTALLVHK-TAPKWKFESLDGVPAS 475
                 6889******************************.5********************************.6***********9875 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   2.2e-26     2e-22       5     145 ..      34     181 ..      31     207 .. 0.90
   2 !    4.3   0.5    0.0023        20     183     249 ..     398     465 ..     382     467 .. 0.82

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 2.2e-26
                 TEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEE.BTSEEEEEB-HHHHHHHHC......HHHHHHHCCHHHHHHHHHHSSSEEEEEE- CS
       ECH_1   5 gvaviklnrPeavNalsaelltEliqalekleddksvravvLtG.gdkaFaaGadlkemaeeek......akqallkeevlelwtklytvpkpviaavn 96 
                 g+  i lnrP+++N+l+  ++  ++  + + e++  +  v L G gd+a +aG+d+ ++a+ ++      +k a++    ++l++ + t +kp +a + 
  CCE27749.1  34 GLRTIILNRPKQLNSLNGSMIRKIVPRMIEWEKSDMANIVLLKGaGDRALCAGGDVAALAKLNQegpngwKKSADFFALEYKLMHYIATYKKPYVALMD 132
                 667899*************************************************9998876654446667778888888999**************** PP

                 SEEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHH CS
       ECH_1  97 GaaigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvG 145
                 G  +gGG+ l + + ++ia ++ +f+ +e+ +G++p++g++++l+r  G
  CCE27749.1 133 GVTMGGGVGLSMHAPFRIATEKTVFAMPETTIGFFPDVGASFFLPRLNG 181
                 *********************************************9766 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHHH.HTCSH---- CS
       ECH_1 183 alelaeklaekspaalrqlkealnakledalaeqleaeaklfestfskddikeGlqaf.lEkrkpefe 249
                 a + +  l + sp+a+  +  +++   +   ae ++ e ++ ++++++ d+ eG++a  + k  p+++
  CCE27749.1 398 AEKTLSTLQQRSPTAVHVALRQMRLGGDWDIAETFKREHQIASKFMQHPDFTEGVTALlVHKTAPKWK 465
                 34455668889999**************999************************9962577788886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3994.35
//
Query:       CCE27750.1  [L=117]
Description: probable small nuclear ribonucleoprotein chain D2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-18   64.6   0.1    6.9e-18   64.1   0.1    1.2  1  LSM       LSM domain
  ------ inclusion threshold ------
      0.032   13.9   0.0      0.058   13.0   0.0    1.3  1  Hfq       Hfq protein


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.1   7.7e-22   6.9e-18       7      65 ..      44     114 ..      39     116 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 7.7e-22
                 TTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET............EEEEEEEEEEEGGGEEEE CS
         LSM   7 inkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk............ekrklglvliRGnnivli 65 
                  + +v++  +n+r+l  ++k+fD+++N+vLe+v+e+++++             ++r+++++++RG++++l+
  CCE27750.1  44 SHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPrladgkkgrpvnKDRFISKMFLRGDSVILV 114
                 5789**********************************999****************************98 PP

>> Hfq  Hfq protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.5e-06     0.058       5      38 ..      37      70 ..      36      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.5e-06
                HHHHHHHCT-EEEEEETTS-EEEEEEEEE-SSEE CS
         Hfq  5 fLnqlrkekipvtifLvnGiklkGviksfDnftv 38
                +L+++ k++++v i + n  kl  ++k+fD ++ 
  CCE27750.1 37 ILQTAVKSHTQVLISIRNNRKLLARVKAFDRHCN 70
                799***************************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 920.77
//
Query:       CCE27751.1  [L=462]
Description: probable DFG5 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   9.1e-150  499.2  12.0   1.1e-149  499.0  12.0    1.0  1  Glyco_hydro_76  Glycosyl hydrolase family 76
    1.3e-05   24.5  11.3     0.0024   17.0   0.1    3.2  3  Glyco_hydro_88  Glycosyl Hydrolase Family 88


Domain annotation for each model (and alignments):
>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  499.0  12.0  1.2e-153  1.1e-149       1     365 [.      31     405 ..      31     406 .. 0.98

  Alignments for each domain:
  == domain 1  score: 499.0 bits;  conditional E-value: 1.2e-153
                     SXHHHHHHHHHHHHHHCETTECCTCTCBSCES-GHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHCCCTCEE-SSSTTCTCSSEHHHHHHHHHH CS
  Glyco_hydro_76   1 siksaaatiakgllkyYkgnesggtpgnlpdpyywWeagalfgalidywrltgdstyndlitqallaqagenydympanqsrtegnDDqafwgla 95 
                     s+k+ aat+a+gl+kyY+gn++g+tpgnlpdpyywWeaga+fg++idyw+ltgd++ynd + qa+++qag+ +d+mp+nq+rtegnDDq+fw++a
      CCE27751.1  31 SVKNTAATLAYGLMKYYTGNNTGDTPGNLPDPYYWWEAGAMFGTIIDYWHLTGDTSYNDATLQAMVHQAGPTKDFMPKNQTRTEGNDDQGFWAMA 125
                     799******************************************************************************************** PP

                     HHHHHHH......H--HHHHHHHHHHHHHHHHCB-SCSCCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHH CS
  Glyco_hydro_76  96 amtaaernfpep.tdepswLalAqavfntqasrwdeetcgGGlrWqiftwnsgydyknsisngplfqlaarLarytgnetYlewAekvwdWvedv 189
                      m+aae++fp+p +d+ +wLa++qavfn+ + rwd  +c GG+rWqif++n+g++yknsisng++f++aarL rytgn+tY +wA+k++dW +++
      CCE27751.1 126 SMSAAEVKFPDPpKDDAQWLAVTQAVFNQYVLRWDPADCTGGMRWQIFQFNNGWNYKNSISNGCFFNIAARLHRYTGNATYGDWATKIFDWHQSI 220
                     *********************************************************************************************** PP

                     SCSBTTTS-B-SEEE..TTTCCEEEE---HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCEECTTEEEEEE-TTSTTCCTTHHHHHH CS
  Glyco_hydro_76 190 gliddedwlvyDgas..vednctdinklqwtYnqGtylsgaaylynaTgdekWldrvkgllnatlstffpdgnilyevacepsekcnnDqrsFkg 282
                     gli ++d+ v Dg++   +++c+ i+ l+w+Yn+G++l+gaa +ynaTgd+kW++ v+gll++++s+f++d +++ye+ cep++ cnnDq+sFkg
      CCE27751.1 221 GLI-TKDYGVHDGITidLDGTCKRIDLLEWSYNSGIFLHGAAAMYNATGDDKWKTAVDGLLQHSKSKFTKD-GVIYEQFCEPNKLCNNDQQSFKG 313
                     ***.**********766899***************************************************.*********************** PP

                     HHHHHHHHHH..SHHHHHHHHHHHHHHHHHHHTTTB...........TTTSB-TTTT.TSSCCHHHHHHHHCCHHH............HHHH CS
  Glyco_hydro_76 283 ilarwlaltaqlapetadtiepllrasaeaaakscsg........gsdgttcglkwl.kgtwdgdaglgeqmsaleviqallveekkaplta 365
                     +l+rwla+t+qlap+t++t++p l++ a +aa+ c g        g  gt+cg+ w   gt+dg   +g+ m+al +++++l+ ++++p+t+
      CCE27751.1 314 YLLRWLAATTQLAPYTYSTVKPILETAATKAASVCIGspdatkykGPPGTACGYTWIpGGTFDGVVAVGSMMNALDAVMYNLIGKASPPVTS 405
                     *************************************9999999989**********6699*************************999996 PP

>> Glyco_hydro_88  Glycosyl Hydrolase Family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.6   0.00018       1.6      23      58 ..      60      95 ..      33     132 .. 0.77
   2 !    5.8   0.8   0.00071       6.3      19      63 ..     170     219 ..     154     228 .. 0.76
   3 !   17.0   0.1   2.7e-07    0.0024      25      85 ..     247     318 ..     231     326 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00018
                    TTCCE.HHHHHHHHHHHHHHHHH--HHHHHHHHHHH CS
  Glyco_hydro_88 23 kenewewtnGvflsglleayeatgdkeyldyakawa 58
                    ++  + w+ G++++ +++++  tgd  y d++ + +
      CCE27751.1 60 PDPYYWWEAGAMFGTIIDYWHLTGDTSYNDATLQAM 95
                    444556**********************99876644 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.00071
                     CT.SSTTCCE.HHH....HHHHHHHHHHHHHH--HHHHHHHHHHHHHCCC CS
  Glyco_hydro_88  19 ie.lkkenewewtn....Gvflsglleayeatgdkeyldyakawadslid 63 
                      + ++ +n w+++n    G f++  +++  +tg+ +y d+a++++d+++ 
      CCE27751.1 170 WQiFQFNNGWNYKNsisnGCFFNIAARLHRYTGNATYGDWATKIFDWHQS 219
                     445677899998752222777777789999****************9975 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 2.7e-07
                     CCE.HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCTTS-...........CTTSGGGTGHHHHHHHHH CS
  Glyco_hydro_88  25 newewtnGvflsglleayeatgdkeyldyakawadslideggk...........telelDdidiglllllly 85 
                      ew ++ G+fl g +++y+atgd++ + +++   ++   + +k           ++l+ +d++ ++ +ll++
      CCE27751.1 247 LEWSYNSGIFLHGAAAMYNATGDDKWKTAVDGLLQHSKSKFTKdgviyeqfcepNKLCNNDQQSFKGYLLRW 318
                     58******************************9999999999988899999988888889999999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3502.77
//
Query:       CCE27752.1  [L=311]
Description: uncharacterized protein CPUR_01226 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-32  111.3   0.1    5.4e-32  110.6   0.1    1.4  1  DUF4188          Domain of unknown function (DUF4188)
     0.0014   18.1   0.0     0.0021   17.5   0.0    1.2  1  Dehydratase_hem  Haem-containing dehydratase


Domain annotation for each model (and alignments):
>> DUF4188  Domain of unknown function (DUF4188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.1     6e-36   5.4e-32       1     117 []     116     243 ..     116     243 .. 0.94

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 6e-36
     DUF4188   1 lvVfllGmrvnkllgv..kkwlevleamprmlre.leekkelGlLgaeslig..........srevllvqYwrdvesLeafakseeHreawrkfnkkvk 86 
                 lvVf lG+++n+++g   + ++e++e++ +m r+ l++++elGlL++++++g          ++++l+ +Y+rdves+++fa++e Hreaw+++n    
  CCE27752.1 116 LVVFNLGVQFNHPRGQmcPYAKELAEKFAHMSRDlLSRREELGLLSVTNWTGldlqpasgagPDTLLMSYYFRDVESIHRFAHEEMHREAWDWYN--SV 212
                 7*************98889999************5566669**********77********99********************************..45 PP

     DUF4188  87 ksgavgifHEtYvveagayesiYvnmpptgl 117
                 k++++gifHEt+vv+a+++esiYvn++p+ l
  CCE27752.1 213 KPHHIGIFHETFVVPAHGHESIYVNCRPFML 243
                 99************************99865 PP

>> Dehydratase_hem  Haem-containing dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.3e-07    0.0021     196     305 ..     135     240 ..     122     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.3e-07
  Dehydratase_hem 196 yleelepvlkegmtfLrdegeetGvlslrllrnvdedeeka..tertvqlayFrdLaslErwgrshktHlaifkgfmklakklgeerklrlwhE 287
                      y +el ++  +  ++L  ++ee G+ls++ ++  d + ++    +  +   yFrd++s+ r +     H ++ ++++  +++++  +++ ++hE
       CCE27752.1 135 YAKELAEKFAHMSRDLLSRREELGLLSVTNWTGLDLQPASGagPDTLLMSYYFRDVESIHRFA-----HEEMHREAWDWYNSVK-PHHIGIFHE 222
                      778888888888889999999999999999999994444334478888889999999999988.....5578899999999988.568999999 PP

  Dehydratase_hem 288 vsvlkegeqefEYvgChe 305
                      + v+ +   e  Yv+C +
       CCE27752.1 223 TFVVPAHGHESIYVNCRP 240
                      999999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2490.71
//
Query:       CCE27753.1  [L=579]
Description: uncharacterized protein CPUR_01227 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 4556.82
//
Query:       CCE27754.1  [L=556]
Description: uncharacterized protein CPUR_01228 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-08   34.2   6.3    1.3e-06   28.4   0.1    4.4  4  DUF4048        Domain of unknown function (DUF4048)
  ------ inclusion threshold ------
       0.13   11.6   0.0       0.21   10.9   0.0    1.3  1  FAM76          FAM76 protein
       0.37   10.8   1.2       0.68   10.0   1.2    1.4  1  Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain


Domain annotation for each model (and alignments):
>> DUF4048  Domain of unknown function (DUF4048)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.8      0.28   1.6e+03     195     220 ..     122     147 ..      85     201 .. 0.47
   2 !   15.8   2.4   1.6e-06    0.0097       1      55 [.     267     321 ..     267     331 .. 0.84
   3 !   28.4   0.1   2.2e-10   1.3e-06      91     171 ..     332     407 ..     329     434 .. 0.54
   4 ?    0.9   5.7     0.054   3.2e+02     230     249 ..     437     457 ..     401     466 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.28
     DUF4048 195 vdtPeqtkkskskkkskskaaqkpsk 220
                 + +P++  ++++ ++s+s++a  ps+
  CCE27754.1 122 IAPPTKDPSRPTPSASSSTSAPAPSS 147
                 22222222222222222222222222 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.6e-06
     DUF4048   1 HtRtLSLLspekdsvklpfpqaqeskssesdaerasrlPRsatlPsvdrsdaskk 55 
                 HtRtLSLLsp+k++ +l++   + + + ++ ++ + r P +a+ P++ + ++ ++
  CCE27754.1 267 HTRTLSLLSPAKSNLDLSLLGETTAGNDSEPSSLTDRRPNQASNPALLKRATWQP 321
                 ************9999999999999988889999999*******99876665554 PP

  == domain 3  score: 28.4 bits;  conditional E-value: 2.2e-10
     DUF4048  91 qmAsdlkdGLWtFlEDirQAtvGeeginatesRtkqasqtskaprrqskrsslkass.srerasgsssrssssssskkaasa 171
                 q+  d+k GL  F+EDirQ t+G+e i++   R  q s+      + + r+++ +   + ++++ +s+++++s+++  +a+ 
  CCE27754.1 332 QLVEDFKIGLRAFVEDIRQITIGDEPISGQY-RPLQRSSH-----AGHYRTGSLGQGvNTDQSRIKSVQQRASETTPPTAPP 407
                 6778***********************9854.44433331.....1222222222211233333333333333333333333 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.054
     DUF4048 230 eldvdD.nWdvWDtPqkpkth 249
                 ++ +dD +W +WD+P + k+ 
  CCE27754.1 437 LDSIDDtDWANWDSPVPVKST 457
                 44455438********97743 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.5e-05      0.21     184     251 ..     117     201 ..      86     210 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.5e-05
       FAM76 184 s................rlevskleeek...laeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkite 251
                 s                 + +s+++       +  ++ +++s++s  sn++d ++a++  + ++++lk ++++ ++el + +k+ ++
  CCE27754.1 117 SfslpiapptkdpsrptPSASSSTS--ApapSSVPATPQDKSAASPLSNVNDFIIAIAAKERKVMELKEEVAREETELASLKKQFAA 201
                 1222223332222232222222222..122223333444556668999***********************************9876 PP

>> Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.2   0.00011      0.68       2      24 ..     177     199 ..     176     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
  Bap31_Bap29_C   2 eiekLkkeLkkkkkDlealKkQa 24 
                    ++ +Lk+e ++++ +l  lKkQ 
     CCE27754.1 177 KVMELKEEVAREETELASLKKQF 199
                    5789******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4142.40
//
Query:       CCE27755.1  [L=1048]
Description: uncharacterized protein CPUR_01229 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-21   75.3   0.0    1.2e-20   74.6   0.0    1.4  1  DNA_ligase_A_N  DNA ligase N terminus
    6.9e-19   68.3   0.0    9.6e-18   64.6   0.0    2.1  1  DNA_ligase_A_M  ATP dependent DNA ligase domain
    1.5e-05   25.4   0.0    2.8e-05   24.5   0.0    1.5  1  RNA_ligase      RNA ligase


Domain annotation for each model (and alignments):
>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.0     2e-24   1.2e-20       1     161 [.       4     187 ..       4     198 .. 0.84

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 2e-24
                     BCHHHHHHHHHHCC..---HHHHHHHHHHHH...HTS-..SHHHHHHHHHHSS-CCC.S------HHHHHHHHHHHHT--HHHHHHH.....HHH CS
  DNA_ligase_A_N   1 pFaelaelfekiee.stkkrlekrailanff...rkvesagpedlypalrLllPdyd.greygigesllakalaealglskkkikda.....lak 85 
                     pFa +++l+++  +    k+    ++++++f   r++++a+++dl+++l  llP+++ +r+y i+  +l k++++al l    + +      + +
      CCE27755.1   4 PFASVCDLLDECYKlHVEKKP-NARAVSKWFdqhRNCINAQNTDLAALLSTLLPEKRsDRVYCIKTPTLEKLIGKALMLGASRLIELglykqSGQ 97 
                     799***********7664444.5889*****88888888999999999999***************************99775555478655333 PP

                     HS-HHHHHHHHHCCHHHH..------BHHHHHHHHHHHH..........H-.STTHHHHH.HHHHHHHHHHS-HHHHHHHHHHHCT---S CS
  DNA_ligase_A_N  86 vgDlgevaeevlskrstl..akkspltieevnelLdkla..........aa.gkgsedek.kkilkkllkraspeEakyliriilkdlri 161
                       Dl++++e++l   ++    + +++t+ee+++ L+ +a          +a + +s++ + ++ l+++++r+s++Eak+++r+ilk++r 
      CCE27755.1  98 GVDLADCVERILTVTPNPlySERDSITVEEIDQVLHGIAskivwsspciRAdQASSTAVRgRDDLQDIYRRLSAREAKWFTRLILKEFRP 187
                     79**********88888899*******************777776666622544444444599*************************96 PP

>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   1.6e-21   9.6e-18       9     189 ..     263     482 ..     259     495 .. 0.72

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 1.6e-21
                     CHHHHHHHTTTSEEEEEEEESSEEEEEE....EETTEEEEEETTS-B-GG....GCHHHHHHH..HHHBSTTESEEEEEEEEEEEETTTTCBEHH CS
  DNA_ligase_A_M   9 siekalkkleekafivEiKyDGeRaqvh....kegdkvklfSRrlkdita....akpelvkal..keafkkdeksvilDGElvavdketgeilpf 93 
                     si++ l+ ++ + + vE+K+DGe  q h      + ++++fS ++kd t+     k+ ++k +   +a    ++++il+GElv+ d   g+    
      CCE27755.1 263 SIKHCLD-MGHGRMSVEEKIDGEYCQFHvsirDGKLQIQIFSKSGKDSTEdrckLKGIITKSIgfGRADCTIQHDCILEGELVVHDDVVGSLNLA 356
                     5555555.4688899*********887744313455899***********8886444455544222333344568*********66655443332 PP

                     HHHCHHHHCHC...........................CTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEEE CS
  DNA_ligase_A_M  94 qklasrkkkkk...........................kveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaeslev 161
                        ++  + ++                           +     ++ +l ++++DiLyld++sl+d   +eR+++L++ ++ +++r el+++++v
      CCE27755.1 357 DLHSYDTDTAVsqedkimpfhkirnhiarrgrlinvdlDSPPR-SHENLMIVFYDILYLDQQSLLDVCRSERFEILKRTVRCDSGRAELVRRTVV 450
                     2222222222234445788887777777777788776533333.5779*******************************************9999 PP

                     .....SSHHHHHHHHHHHHHTTECEEEEEETT- CS
  DNA_ligase_A_M 162 .....kdveeleelleeaiseglEGlvvKnpds 189
                          + ++e++++++++i ++ EGlv+K  d+
      CCE27755.1 451 dfhrpTGASEVRKAFAKVITAKGEGLVLKP-DG 482
                     666556899*******************96.33 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   4.6e-09   2.8e-05       4     154 ..     276     490 ..     273     502 .. 0.61

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 4.6e-09
                 EEEEE-SSEEEEEEEE.TT....EEEEETTCEBCTTTHHHHHHTHHHHHHHHHHHHH..........ECCEEEEEEEES.SS.............TTSS CS
  RNA_ligase   4 vvtEKlDGtnfriylv.ke....vgvasRsqilpfgeekfkefkrwaaalrkklkekla........neelilyGElighsi...........kygglp 78 
                  v+EK+DG+ ++++++ ++    ++++s+s+    +e+++ + k   ++         +         ++ il GEl+ h             +y+   
  CCE27755.1 276 SVEEKIDGEYCQFHVSiRDgklqIQIFSKSGKD-STEDRC-KLKGIITKSI-------GfgradctiQHDCILEGELVVHDDvvgslnladlhSYDT-- 363
                 69*************963357779999999888.333333.4444444444.......255555669789*********555445444444443333.. PP

                 .........................................EEEEEEEEEEECTTBECE--HHHH.HHHHHCCT........B..EEEEE.SS.HHHHH CS
  RNA_ligase  79 k........................................efyvFdifdirdkeeqrylspdev.ealakglg........tvpvlyegkfl.aaeel 127
                 +                                         ++ +di+ ++ +++   + ++e+ e+l++ +           + +  +++  +a+e+
  CCE27755.1 364 DtavsqedkimpfhkirnhiarrgrlinvdldspprshenlMIVFYDILYLD-QQSLLDVCRSERfEILKRTVRcdsgraelVRRTVVDFHRPtGASEV 461
                 0235556667777788888888888888999999999887777778888776.2333333445555666663323344444311222222222455555 PP

                 CCC....HHHHTC--EEEEEESSSSBE.TTE CS
  RNA_ligase 128 lel...llskgnkrEGlVikpeselyk.nkg 154
                 ++    +   + k+EGlV+kp+ ++++ +++
  CCE27755.1 462 RKAfakV--ITAKGEGLVLKPDGPYFDfHNR 490
                 5555431..3559********9887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1048 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 7248.14
//
Query:       CCE27756.1  [L=347]
Description: related to gibberellin 20-oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-19   71.2   0.0    1.7e-19   70.7   0.0    1.2  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    4.1e-17   62.5   0.0    8.9e-17   61.4   0.0    1.5  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0     2e-23   1.7e-19       1     101 [.       8     108 ..       8     121 .. 0.89

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 2e-23
      DIOX_N   1 iPvidlsplsddedraavaeqlreAcrevGffyvvnhg..vpeelidelfeaareFFalPeeeKeklakspsfrGysrlgeektdg...kkldwkesfd 94 
                 iP+idls      d + va+ql +A+ e+Gf+y+ n+g  +p + +de+fe+ +++ + P++eK+ ++ + ++rG++++++e++d+   +++d+ke+f+
  CCE27756.1   8 IPLIDLS-----GDPSTVASQLVNAAAEHGFIYIRNQGhdIPVASVDEAFELGKKLLDAPLAEKQVCSIQTNNRGWTGMHTETLDPknqRVGDYKEAFN 101
                 9******.....45578*****************8754449***********************************************9********** PP

      DIOX_N  95 lgtelpe 101
                 +g   + 
  CCE27756.1 102 FGEFIDH 108
                 **98543 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0     1e-20   8.9e-17       5     101 .]     169     286 ..     166     286 .. 0.90

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 1e-20
                   EEEEEE-S------..---EEEEEESSSEEEEEEE-.TT---EE.EETE.EEE----T........TEEEEEE-HHHHHHTTS-S----EEE-.--- CS
  2OG-FeII_Oxy   5 lvlnyypphpdpev..ilglgahtdaslltillqdd.vgglevf.kdgk.wlrvppvd........nslivniGdallflsngryksvlHrVl.pvn 87 
                   ++l+y pp+  +++  + + gah+d++ lt+l+  +  +glev+ +d+k w+ vp v+          ++vniGd l  ++ng ++s+ HrV  p  
    CCE27756.1 169 RFLRYPPPSSTTHSpgDVRAGAHSDYGSLTLLFRLKgQAGLEVLgRDNKtWTPVPVVPpgteqdpsPPILVNIGDLLSYWTNGLFRSTVHRVVfPGG 265
                   56888788877777889999***********************7688889******888888888888999*********************97777 PP

                   GTGS.......EEEEEEEE-- CS
  2OG-FeII_Oxy  88 eger.......Rvsiayfiep 101
                   e+er       R+siayf++p
    CCE27756.1 266 EEERgemsampRYSIAYFCHP 286
                   7777***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2552.98
//
Query:       CCE27757.1  [L=771]
Description: related to MKT1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-68  228.2   0.0    1.1e-67  227.8   0.0    1.2  1  MKT1_C    Temperature dependent protein affecting M2 dsRNA re
    1.7e-30  105.2   0.0    3.7e-30  104.1   0.0    1.6  1  MKT1_N    Temperature dependent protein affecting M2 dsRNA re
    6.6e-06   26.5   0.0    1.6e-05   25.3   0.0    1.6  1  XPG_N     XPG N-terminal domain


Domain annotation for each model (and alignments):
>> MKT1_C  Temperature dependent protein affecting M2 dsRNA replication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.8   0.0   1.9e-71   1.1e-67       1     239 [.     525     767 ..     525     768 .. 0.98

  Alignments for each domain:
  == domain 1  score: 227.8 bits;  conditional E-value: 1.9e-71
      MKT1_C   1 RfLelrgyvdekheltkwGkaLakalkelk..........eleealllaleLlrlgvLtgdenekpeysgapslgseeekksilLisRvasLlplrlkp 89 
                 RfL+lrgyv+e+h+ltkwG+aLa++l +l+           l+ea+lla+eL+r gvL ++  ++++ +g p++g++eek s+ Lis++a+Ll+lr++ 
  CCE27757.1 525 RFLHLRGYVNESHTLTKWGNALATTLLALRdasengpeipGLDEAALLAFELVRHGVLGAR--HQQDIAGLPRHGTDEEKTSLILISQCATLLKLRHQV 621
                 9**************************************999*******************..8899999***************************** PP

      MKT1_C  90 igytgplsrdllaFrslvkllrrslreliEavlvslllsgeanrerddwlelsssLPffldtntglGivvktyldellkeeekstsgeakedalell.k 187
                  gytgpl+++llaFr l +++r++ r+l+Ea+++s++++g+++rerdd+ ++s++LPf++++++glGi+++t++d+    ++ s+s+e+++++le + +
  CCE27757.1 622 FGYTGPLNKSLLAFRALSTAVRETDRDLMEAIVASMFMYGQCQRERDDCVDISQRLPFLQEPDIGLGIAIRTFFDD----DDVSDSREQRAQRLEDFpA 716
                 ***************************************************************************8....99***************77 PP

      MKT1_C 188 kvfpnvedlkedlerafefwdavyalvkelseekliskellkefekadewle 239
                 +++p ++ l+ed+++++ f++a+ +++++l+  +++ k ++ ++ ka+++le
  CCE27757.1 717 AFMPFAKALTEDFRVCVDFFSAINQGLQTLGL-NEFPKVDKLAWAKAQAYLE 767
                 77799**************************8.*****************97 PP

>> MKT1_N  Temperature dependent protein affecting M2 dsRNA replication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0   6.3e-34   3.7e-30       2      90 .]     355     443 ..     354     443 .. 0.99

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 6.3e-34
      MKT1_N   2 nDlheylgqrLPeelyyylsrGligprilnaltsgelieeppldggdseeYrklvtdllteireqalnLltqrlhrfyqakdvkvkvwf 90 
                 +D+heylg++LPee+++yl++Glig r l+++t+g++ ++p+ldg++s+eY++l+t +l++i+eqal+L+++r+hr + +kd++++vwf
  CCE27757.1 355 KDNHEYLGLQLPEEMFHYLNTGLIGARNLSSITHGQILVQPTLDGVVSDEYKDLITAKLVKIKEQALGLMIPRVHRGIGHKDITMRVWF 443
                 7***************************************************************************************9 PP

>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.7e-09   1.6e-05      17      96 ..      56     138 ..      48     143 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2.7e-09
                 EEEEGGGGTTEEEEEEHHHHHHHHHHH..SE.ETTEE-BS-HHHHHHHHHHHHH.HHTTEEEEEEE--S--GGGHHHHHHHHH CS
       XPG_N  17 rsvsiealegkklaiDaslwlyrflia..vreqlgnalentshlmglfsrllrl.ldfgikPifVFdgkapdlkkeelekrse 96 
                  s++i +le+  +a+Da  +l+++l      e+l  al +   + + +++ l l  +++i P fVFdg+ ++ + e + +r+ 
  CCE27757.1  56 ISYDISELEDSSIAVDATYYLSQLLDGspAHEPLLSALGGLTGIETHINQNLDLwENNRIVPFFVFDGQSVTGQDEVSLQRRL 138
                 4799*********************8622456778888885555566666555516789************999998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 5374.11
//
Query:       CCE27758.1  [L=1364]
Description: related to SSD1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-77  259.0   0.0    1.1e-76  258.3   0.0    1.4  1  RNB              RNB domain
    3.1e-25   88.3   0.0      1e-24   86.7   0.0    2.0  1  Dis3l2_C_term    DIS3-like exonuclease 2 C terminal
      4e-25   87.6   0.0    8.6e-25   86.6   0.0    1.6  1  OB_Dis3          Dis3-like cold-shock domain 2 (CSD2)
    4.6e-05   23.5   0.0      0.065   13.4   0.0    2.7  2  CSD2             Cold shock domain
      0.003   17.6  17.1      0.003   17.6  17.1    3.7  4  TFIIA            Transcription factor IIA, alpha/beta subunit
  ------ inclusion threshold ------
       0.01   15.7   1.9       0.04   13.8   1.9    2.0  1  Surfac_D-trimer  Lung surfactant protein D coiled-coil trimer
       0.15   11.8   0.0       0.15   11.8   0.0    1.9  2  Rrp44_CSD1       Rrp44-like cold shock domain


Domain annotation for each model (and alignments):
>> RNB  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.3   0.0   4.3e-80   1.1e-76       1     325 [.     746    1079 ..     746    1080 .. 0.95

  Alignments for each domain:
  == domain 1  score: 258.3 bits;  conditional E-value: 4.3e-80
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB    1 RkdlrdllvitIdpedakdlDdAisieklpngnyelgVhIADvshyvkegspldkearkratsvyLpekvvpMLPqelsedlcSLnpgedrlalsvl 97  
                  R+d+r+  ++t+d +++ +l +Ai+++  +++++e+g+h++Dv+h+vk++s +d+ea+kr+tsv L ++ + +LP++ls+++cSL+pg++r+++sv+
  CCE27758.1  746 RRDFREEQTFTVDYNGSAELGNAIHVKYRSDDKIEVGIHVPDVTHFVKPNSLVDREAKKRGTSVQLINRFCALLPPKLSNEVCSLEPGQERYTVSVV 842 
                  9*************************988899***************************************************************** PP

                  xxxxxx.xxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB   98 idvdek.gev..lsveiylsvIkskarltydevqdlleqkdeke.ekktaedLellyelakalrkkRlkk.galefdspeikllldedkgnrielkv 189 
                  ++v+ + g+v   + ++++s+Iks+a+++ +e+++++++  e + +++  e+++ l+ +a+++r+ Rl   g     +     +ld+ ++n+++ ++
  CCE27758.1  843 FSVNPDnGSVaeGDCWVGKSIIKSSAKISLKEIDQAIADSAEYNeAAAPSEMMRILQAVAQKFREARLGArGEPIA-PLRLLQQLDD-ENNPVQHNI 937 
                  **********76678**********************99988887777********************99677666.7888888888.899****** PP

                  xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB  190 eeetkahslveelmllANelvArfl.seleipailriheepsnekledliklakklglklednsskknlqeslekleeeeaeqllselllrllkeak 285 
                   ++  a ++veelm  AN  vA+ l +  +++a+lr++  p++ +l+ +++   +lg++ + + s  +lq+sl ++e+ + ++ ++ ++l+++ + k
  CCE27758.1  938 FDSAPALEMVEELMHKANAYVAQRLvEGMPEKALLRRQASPNPRRLQTFVERMDALGFEIDASGSG-ALQNSLFRVEDADLRKGMETVVLKSMHRGK 1033
                  *************************8999******************************7777777.9***************************** PP

                  xxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB  286 yssep......vgHfgLaleeYthfTSPirRYpDlvvhrllkalla 325 
                  y+         ++H+ L++  YthfTSP rRY+D+vvhr+l+ +l+
  CCE27758.1 1034 YFIAGktskqlWPHYSLNVGLYTHFTSPTRRYADIVVHRQLESILS 1079
                  **888889999********************************997 PP

>> Dis3l2_C_term  DIS3-like exonuclease 2 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   3.9e-28     1e-24       1      79 [.    1131    1210 ..    1131    1218 .. 0.91

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 3.9e-28
  Dis3l2_C_term    1 GpleekavVvnVldssfDVlileyGlekRVyldklplkefefdk.tkvLtLyWkkdvpeaevvqeeekfssvvkvvlkse 79  
                     G+l+++++V++V++s+fDVli+e G+ekRV++d+lplk++ef+k ++vL+LyW+k+vp++++v+e+e+++    +  +++
     CCE27758.1 1131 GDLIAEGIVLCVYESAFDVLIPEWGFEKRVHCDQLPLKKAEFRKdKRVLELYWEKGVPSSAFVPEDERPKAAASQRMTNA 1210
                     89****************************************985889********************999887776665 PP

>> OB_Dis3  Dis3-like cold-shock domain 2 (CSD2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0   3.3e-28   8.6e-25       2      77 .]     635     710 ..     634     710 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 3.3e-28
                 EEE--SSTTS--EEEETTSSTTTHHHHTTTTTT--EEEEE----TT-SS-EEEEEEE-HHHHHHHHHHHHHHHHTT CS
     OB_Dis3   2 vlfkPldkrlPriliptkelpeeflenpeelegklfvvkidsWsetsryPlGeivksLGeagdieaeteaiLleng 77 
                 v+fkP+dkr+P i ipt+++p +f+e+++++++ +fv++i++W++ts +P+G++v++LG +gd+++et+a+L +n+
  CCE27758.1 635 VWFKPTDKRVPLIAIPTEQAPRDFVEKHQDYADRIFVACIKRWPITSLHPFGTLVEQLGCMGDLNVETDALLRDNN 710
                 9***********************************************************************9996 PP

>> CSD2  Cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0021       5.4       1      36 [.     446     482 ..     446     492 .. 0.87
   2 !   13.4   0.0   2.5e-05     0.065       3      71 ..     638     713 ..     636     717 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0021
        CSD2   1 FVvpddkrlkqdifip.keklkgakdGdkVvveitey 36 
                 +V+ +d  l  difi   ++++ a +Gd+V +e+++ 
  CCE27758.1 446 YVTTQDGLLDADIFICgSKDRNRALEGDLVAIELLDV 482
                 89999*********886888999**********9875 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.5e-05
        CSD2   3 vpddkrlkqdifipkeklk.gakd......GdkVvveiteyp.dkknpeGevievLGkkgdpgveilsilakhglpe 71 
                 +p dkr++  i ip e++  ++++      + + v+ i+++p +  +p G+ +e LG  gd +ve ++ l+ +++++
  CCE27758.1 638 KPTDKRVP-LIAIPTEQAPrDFVEkhqdyaDRIFVACIKRWPiTSLHPFGTLVEQLGCMGDLNVETDALLRDNNFSS 713
                 56666666.366664433312222111122445566799***76667**************************9974 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1  18.8       1.1   2.9e+03     111     294 ..      26     192 ..       1     252 [. 0.24
   2 !   17.6  17.1   1.2e-06     0.003     106     356 ..     294     570 ..     275     574 .. 0.45
   3 ?   -3.7   0.1       3.4   8.8e+03      79      89 ..     615     630 ..     589     654 .. 0.51
   4 ?    2.0   2.0     0.064   1.6e+02     260     330 ..    1193    1256 ..    1085    1315 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
       TFIIA 111 ataatfslpakleppvqipa..gvtlqtasgqlykvnvqasgaqqiaaqplqqvvqq............sqgsaaqssvaalqaqsqqaqalaepqqq. 194
                  + a   +p++l+p + + a  g+++   ++q            ++++q++qq++ +            +q+   + + ++lq+  +++q   + +qq 
  CCE27758.1  26 LHIAHRRTPSELTPLMSMFAnpGMEQLAIQQQ-----------IELLQQQQQQIQAThqqyvnlgmippGQAIGPSGAFNPLQPIGNAFQFPNQMGQQn 113
                 22222333333333222222222222222211...........11111111111111000000111122333333333333333322222222222221 PP

       TFIIA 195 lekqqqqqqqqqqqqqqqqvqqqqqe.....................esqqaqqasqeqvagsqvessqtdgaedaleeespvlegelsaeeeagaqke 272
                 l+    +q q+       ++++ +q+                                    ++ e++qt++ e+                     +  
  CCE27758.1 114 LA----PQSQS-------HSHRRNQSampnmgmgpppapssgasgstF--------------GNFEAPQTQSRENTGG------------------RGG 169
                 11....11111.......111111111111112221111111111110..............2222222222222211..................222 PP

       TFIIA 273 elsreeidri.reealkakelek 294
                  +++   +++ ++ al + ++++
  CCE27758.1 170 RAGSGGGHQRrHSLALADAKKAA 192
                 22222222221222222111111 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.2e-06
       TFIIA 106 a....nssaataatfslpakleppvqipagvtlqtasg...qlykvnvqasgaqqiaaqplqqvvqqsqgsaaqssvaalqaq...sqqaqalaepqqq 194
                 +    ++s+++ a+ + pa +    +   g  +q++sg    +y+ n q++  q   + ++ q   ++ ++++ s+++alqa+    qq+q+l  +q++
  CCE27758.1 294 NwrnqGQSQDAPANAQAPAFQPG--HRSRGSVNQSVSGigaFQYNPNQQPQLVQLSGQMMIPQLYGHQLNPIQLSQLQALQAAqltGQQFQGLQASQHA 390
                 13323344444455555544433..66668888999988764465555666666666666666655566666666666666652211222222222222 PP

       TFIIA 195 lekq....qqqqqqqqqqqqqqqvqqqqqe......esqqaqqasqe...........qvagsqvessqtdgaedaleeespv......legelsaeee 266
                    +    qqqqq+qqqqqq+++             + + ++                      v++++++ a    +++  +      + g + ++++
  CCE27758.1 391 ---GqmggQQQQQHQQQQQQRKT------LftpylpQASLPA----LlgdgqlvsgilR-----VNKKNRSDAY--VTTQDGLldadifICGSKDRNRA 469
                 ...11111222121111111112......1233332222222....1333433333331.....3222222222..11111221221123344444444 PP

       TFIIA 267 agaqkeelsreeidrireealkakelekeskkkkr.aeessladlseilqlDGagddsde.................eeeeeesdedsdsessddedeq 347
                  + +   ++  ++d++     ++k +eke+kkk++  +++ + ++++  q  G +dd+                   +   +++++d       + ++q
  CCE27758.1 470 LEGDLVAIELLDVDEV----WSQK-REKEEKKKRKdITDTRSGSTNQGSQHSGNNDDNHGsgnnppeggirrrgslrQRPTQKKNDD-V-----EVEGQ 557
                 3334444444444444....3322.3333333333244466778999********99999999999998876665532222222222.1.....22222 PP

       TFIIA 348 ....veEDplNSd 356
                     veE+ +  d
  CCE27758.1 558 slllVEEEEISDD 570
                 4677888887544 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3.4
       TFIIA  79 a.....sqapastsqs 89 
                 a     s+++ s +q+
  CCE27758.1 615 ArdgsnSRHNDSRQQE 630
                 0111112222222222 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.064
       TFIIA  260 elsaeeeagaqkeelsreeidri.reealkakelekeskkkkraee.ssladlseilqlDGagddsdeeeeee 330 
                  ++++e++++a ++ ++++ + ++  e a kak      k++++a++ ++++ + +   +D   dd+d+   ++
  CCE27758.1 1193 VPEDERPKAAASQRMTNAMAAARqAEAADKAK------KEREEAARkQTVTGTISTDDVDALFDDDDD---DN 1256
                  33444444444444443333333111111111......111111111222223333344443333333...11 PP

>> Surfac_D-trimer  Lung surfactant protein D coiled-coil trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.9   1.6e-05      0.04       3      38 ..      53      88 ..      52      90 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEET CS
  Surfac_D-trimer  3 aLrQrveaLeGklqrLqnafsqYkKavLFPdGqsVG 38
                     a++Q++e L+ + q++q+   qY    + P Gq++G
       CCE27758.1 53 AIQQQIELLQQQQQQIQATHQQYVNLGMIPPGQAIG 88
                     789********************************9 PP

>> Rrp44_CSD1  Rrp44-like cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.9e-05      0.15      16      78 ..     424     489 ..     410     531 .. 0.64
   2 ?   -5.0   2.7         7   1.8e+04      95     108 ..    1244    1259 ..    1241    1265 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.9e-05
                 HHHTTSEEEEEEEEESSBTTEEEEE-S..SSSS-EEEESHHHHTS--TT-EEEEEE--GGG.-B-- CS
  Rrp44_CSD1  16 glkngvlyqgniqiseynflegsvslp..rfskpvlivgqknlnrafngdqvivellpqse.wkap 78 
                  l +g l  g +++ + n  +  v+     +   ++i g k+ nra++gd v +ell   e w   
  CCE27758.1 424 LLGDGQLVSGILRVNKKNRSDAYVTTQdgLLDADIFICGSKDRNRALEGDLVAIELLDVDEvWSQK 489
                 566677777777777777777777654114677899*********************977635443 PP

  == domain 2  score: -5.0 bits;  conditional E-value: 7
                  T-B-..-SSS--SSSS CS
  Rrp44_CSD1   95 diea..gddddnness 108 
                  d++a   dddd+n s 
  CCE27758.1 1244 DVDAlfDDDDDDNTSD 1259
                  4444114455555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1618  (0.0902449); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.02u 0.30s 00:00:01.32 Elapsed: 00:00:00.49
# Mc/sec: 8297.15
//
Query:       CCE27759.1  [L=654]
Description: related to RNA export mediator GLE1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-54  184.5   0.0    2.6e-54  184.1   0.0    1.2  1  GLE1      GLE1-like protein


Domain annotation for each model (and alignments):
>> GLE1  GLE1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.1   0.0   1.4e-58   2.6e-54       2     249 ..     344     618 ..     343     620 .. 0.91

  Alignments for each domain:
  == domain 1  score: 184.1 bits;  conditional E-value: 1.4e-58
        GLE1   2 kikqikknlleqvke.dkelkkllgdlkrkInpkvgQltnsseqlkkitkelkellesgkpvkvadk.........p....................el 70 
                 ++k ++knl++ +k+  ++l   lg+l+r++++++gQlt+ +   + it++l  ll ++ +  + +          +                    ++
  CCE27759.1 344 NLKGLRKNLVDLSKQtGSPLSGRLGALRREVRVSIGQLTGVKGANTPITTKLIGLLRQSID--PNGPcpspmvnarDyiarysqpanladstneplvPS 440
                 678899*****99999****************************************55544..455576655555505555556666777777778888 PP

        GLE1  71 aykyllnflAkalvsqaetevsakpeaAfplArvavgllse.h.....pelgdlllArlvkkCpylvpfypakkegqsteeyrkrlGykrsddgklete 163
                 ++ yl+n++Ak++++q+ +e+++ p+aA p+++++++++s+       ++++d+l+A+++++Cp+l++     ++++s e++r++lG+k+ d   ++ e
  CCE27759.1 441 LFVYLINIIAKNIIRQFINECRVDPKAADPIGVFTAQIFSTpDflwrgESFIDILIAKFRVVCPVLFGL----RGDTSLESGREALGWKK-DGTVWIPE 534
                 8****************************************648*************************....****************8.999***** PP

        GLE1 164 dkyleRmsGiirlYaaiiqtelsksskenphppgleiaWrwlarilnlpleplsnitatllaafLevagnrllkaYgkqfqKllel 249
                 +k+++Rm+G+ +++a+i ++++s+ sk+np+pp ++  Wr++a+i+n+p  ++s++++++l a+++ +++r+l+++g+++ + l+l
  CCE27759.1 535 QKHNDRMAGLGAGFASIALRDFSRVSKSNPYPPVHY--WRAFANIVNCPAGEVSDTQMIVLRAMIDGHEQRFLSFFGNAAVAALRL 618
                 ************************************..*******************************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1095  (0.0610742); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4392.53
//
Query:       CCE27760.1  [L=249]
Description: related to syntaxin family member TLG1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-25   88.2   0.1    3.1e-24   85.4   0.0    2.0  2  Syntaxin-6_N    Syntaxin 6, N-terminal
    1.1e-06   28.6   0.0    2.3e-06   27.5   0.0    1.6  1  SNARE           SNARE domain
     0.0014   19.0   1.6        2.6    8.5   0.0    3.1  3  FlaC_arch       Flagella accessory protein C (FlaC)
     0.0064   16.1   0.5      0.013   15.1   0.5    1.4  1  MscS_porin      Mechanosensitive ion channel porin domain
     0.0067   16.9   0.0        7.1    7.2   0.0    2.6  2  NPV_P10         Nucleopolyhedrovirus P10 protein
     0.0068   16.3   0.2       0.15   12.0   0.0    2.1  2  STAT_alpha      STAT protein, all-alpha domain
     0.0096   16.1   0.3        4.6    7.4   0.2    3.0  3  CENP-Q          CENP-Q, a CENPA-CAD centromere complex subuni
  ------ inclusion threshold ------
      0.017   14.3   0.4       0.25   10.4   0.2    2.1  2  RmuC            RmuC family
      0.032   14.7   0.2       0.29   11.7   0.1    2.1  2  DUF16           Protein of unknown function DUF16
      0.043   12.9   2.2        2.4    7.2   0.1    2.1  2  APG17           Autophagy protein Apg17
      0.059   12.2   1.4        1.4    7.8   0.0    2.1  2  Spc7            Spc7 kinetochore protein
      0.067   12.5   2.6        1.2    8.3   0.3    2.1  2  HemX            HemX, putative uroporphyrinogen-III C-methylt
      0.079   13.2   5.4         30    4.9   0.0    4.0  5  WXG100          Proteins of 100 residues with WXG
      0.081   10.9   0.0       0.35    8.8   0.0    1.8  2  Prominin        Prominin
       0.11   12.3   0.3        3.6    7.4   0.2    2.1  2  SKA1            Spindle and kinetochore-associated protein 1
       0.13   11.5   0.7          3    7.1   0.1    2.2  2  Dynamitin       Dynamitin
       0.15   12.3   4.7        1.6    9.0   0.0    2.4  2  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
       0.16   11.7   0.0       0.37   10.5   0.0    1.4  1  Use1            Membrane fusion protein Use1
        0.3   11.5   1.7        1.8    9.0   0.1    2.5  2  V-SNARE         Vesicle transport v-SNARE protein N-terminus
       0.33   11.4   0.8        1.5    9.2   0.8    2.1  1  SLX9            Ribosome biogenesis protein SLX9
       0.35   11.2   2.2         14    6.1   0.2    2.6  2  BLOC1_2         Biogenesis of lysosome-related organelles com
        0.4   10.9   4.4        5.1    7.3   0.2    2.2  2  ATG16           Autophagy protein 16 (ATG16)
       0.55   10.3   5.6        4.2    7.4   0.0    2.6  3  UPF0242         Uncharacterised protein family (UPF0242) N-te
       0.58   10.1   2.2         59    3.6   1.7    3.0  2  MtrG            Tetrahydromethanopterin S-methyltransferase, 
       0.71   10.1   2.9       0.98    9.7   0.1    2.3  2  Spc24           Spc24 subunit of Ndc80
       0.82    9.5   6.2        5.1    6.9   0.9    2.5  2  Apolipoprotein  Apolipoprotein A1/A4/E domain
        2.6    8.1   6.9        2.3    8.2   0.4    2.6  2  DUF1664         Protein of unknown function (DUF1664)
        2.9    8.0   4.8         14    5.8   0.1    2.4  2  DHR10           Designed helical repeat protein 10 domain
        3.6    7.5   7.1         18    5.2   0.8    2.9  3  Wtap            WTAP/Mum2p family
        4.9    7.2   7.5         27    4.8   1.8    2.7  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C


Domain annotation for each model (and alignments):
>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   5.2e-27   3.1e-24       1      99 []       8     106 ..       8     106 .. 0.99
   2 ?    0.7   0.0       1.3   7.9e+02      63      95 ..     170     202 ..     149     225 .. 0.52

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 5.2e-27
  Syntaxin-6_N   1 DPFfevkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafveevreevke 97 
                   DPF++v+++V  +l++++ l++++ r+++++++++s+el ++ t+L+++l s+++dl+dL+ +v+++++np++++++++el+rr+++v+e+  e+++
    CCE27760.1   8 DPFLQVQQDVLAQLSSTRPLFTSYLRIRSLSTDPSSPELASALTDLETSLASLDEDLSDLDASVQAIQANPTQYGVSPAELARRKRLVQEIGGEMED 104
                   9*****************************99999*************************************************************9 PP

  Syntaxin-6_N  98 mk 99 
                   m+
    CCE27760.1 105 MR 106
                   96 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.3
  Syntaxin-6_N  63 tvriveknpskfkidekelsrrrafveevreev 95 
                   + ++v + +++ +   +el+++ ++++ v e+v
    CCE27760.1 170 VHQTVGNLKRQAGDMGRELEEQGEMLDMVDETV 202
                   222222222223333333333333333333333 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   3.9e-09   2.3e-06       1      53 []     193     245 ..     193     245 .. 0.97

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 3.9e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE   1 emvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                 em+D  d  Ve++  ++++++++L +++++  ++ +  ci +li+v+il+++l
  CCE27760.1 193 EMLDMVDETVERVGGRLQNGMQKLGHVMRQNEDRWSGWCIGVLIFVLILVLFL 245
                 8*************************************************986 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0044       2.6       4      36 ..      45      77 ..      44      78 .. 0.90
   2 ?   -1.4   0.0       5.5   3.3e+03      22      36 ..      94     108 ..      86     111 .. 0.57
   3 !    8.1   0.2    0.0059       3.5       6      40 ..     171     205 ..     156     206 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0044
   FlaC_arch  4 elEnklsklsteletvkkeneelsksveelken 36
                el + l +l+t+l+++ +++++l  sv+ ++ n
  CCE27760.1 45 ELASALTDLETSLASLDEDLSDLDASVQAIQAN 77
                67788999********************99865 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 5.5
   FlaC_arch  22 eneelsksveelken 36 
                   +e+  + e++ ++
  CCE27760.1  94 LVQEIGGEMEDMRQE 108
                 455555555555553 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0059
   FlaC_arch   6 EnklsklsteletvkkeneelsksveelkenVkdl 40 
                  + +++l+ + + + +e+ee  + +++++e+V+++
  CCE27760.1 171 HQTVGNLKRQAGDMGRELEEQGEMLDMVDETVERV 205
                 578899999999999*****************987 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.5   2.1e-05     0.013      79     137 ..      42     110 ..      34     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.1e-05
  MscS_porin  79 sleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrpera...qqqltearqrlqei.......rnrLn 137
                 s+ eL + l++ +  l++l e+l++l+++++++q  p++    +++l+  ++  qei       r++L+
  CCE27760.1  42 SSPELASALTDLETSLASLDEDLSDLDASVQAIQANPTQYgvsPAELARRKRLVQEIggemedmRQELA 110
                 889***********************************9755578888888888888555555555554 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.012       7.1      37      63 ..      50      76 ..      36     111 .. 0.80
   2 ?    7.2   0.0     0.012       7.1      15      61 ..     162     205 ..     157     214 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.012
     NPV_P10 37 vtelnekLdaqsaqLaeletkvenIqd 63
                +t+l++ L ++ + L +l+++v++Iq 
  CCE27760.1 50 LTDLETSLASLDEDLSDLDASVQAIQA 76
                345777777777777777777777774 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.012
     NPV_P10  15 avddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenI 61 
                 + d+ ++ + q v +++ +  d   +  +L++q + L+ ++++ve +
  CCE27760.1 162 EQDEHLEGVHQTVGNLKRQAGD---MGRELEEQGEMLDMVDETVERV 205
                 567888899999******9999...789****************987 PP

>> STAT_alpha  STAT protein, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00025      0.15      10      86 ..      45     120 ..      42     125 .. 0.90
   2 ?    1.4   1.0      0.45   2.7e+02      18      74 ..     153     204 ..     150     225 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00025
  STAT_alpha  10 elrskvqeteqdirkLedeqeeFdfqyqelqkleqeraesekkelkkqkellqqmlnaLdqkRkelvdklkellnll 86 
                 el s  +++e ++ +L ++  ++d  +q +q +  ++   + +el+++k+l+q+   ++ ++R+el++k   + +++
  CCE27760.1  45 ELASALTDLETSLASLDEDLSDLDASVQAIQAN-PTQYGVSPAELARRKRLVQEIGGEMEDMRQELASKAGPSTGRA 120
                 57778899999*********************9.99999999**************************987666665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.45
  STAT_alpha  18 teqdirkLedeqeeFdfqyqelqkleqeraesekkelkkqkellqqmlnaLdqkRke 74 
                  +q++  + ++ e+++  +q++ +l     +++   + ++ e+  +ml  +d++ + 
  CCE27760.1 153 HQQQLGMMREQDEHLEGVHQTVGNL-----KRQAGDMGRELEEQGEMLDMVDETVER 204
                 5788889999999999999999999.....233333444444444444444444444 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.2    0.0077       4.6     122     161 ..      36      75 ..       5      79 .. 0.80
   2 ?    3.3   0.0      0.15        87     133     152 ..      92     111 ..      81     115 .. 0.87
   3 ?    2.0   0.0      0.36   2.2e+02      35      78 ..     161     204 ..     123     226 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0077
      CENP-Q 122 sdlepeldeellpllqqLgshLesmrgnlaqlegllpale 161
                 s+  + + +el++ l+ L+ +L s+ + l++l+  ++a++
  CCE27760.1  36 SLSTDPSSPELASALTDLETSLASLDEDLSDLDASVQAIQ 75 
                 455556799****************************997 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.15
      CENP-Q 133 lpllqqLgshLesmrgnlaq 152
                 ++l+q++g+ +e mr+ la 
  CCE27760.1  92 KRLVQEIGGEMEDMRQELAS 111
                 689*************9985 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.36
      CENP-Q  35 aaleaqLspelhslelLeaeiekeeralerdyeaLreLeknaka 78 
                 ++   +L+   +++  L+++   + r+le+  e L    +++++
  CCE27760.1 161 REQDEHLEGVHQTVGNLKRQAGDMGRELEEQGEMLDMVDETVER 204
                 44455555566666666666666666666666666555555554 PP

>> RmuC  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.17     1e+02     228     265 ..      43      80 ..      28     112 .. 0.69
   2 ?   10.4   0.2   0.00042      0.25     222     275 ..     161     214 ..     152     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.17
        RmuC 228 aeeiaellgelydkfekfgedleklgkklekaqksydk 265
                 + e+a++l +l + ++++ edl++l  +++ +q +  +
  CCE27760.1  43 SPELASALTDLETSLASLDEDLSDLDASVQAIQANPTQ 80 
                 56777888888888888888888888888877766555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00042
        RmuC 222 eaqeknaeeiaellgelydkfekfgedleklgkklekaqksydkavkklegnil 275
                  +q ++ e + +++g+l+ + + +g +le+ g+ l+ + ++++++ ++l++ ++
  CCE27760.1 161 REQDEHLEGVHQTVGNLKRQAGDMGRELEEQGEMLDMVDETVERVGGRLQNGMQ 214
                 57899999************************************8888874333 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       1.1   6.7e+02      35      60 ..      49      74 ..      34     111 .. 0.72
   2 ?   11.7   0.1   0.00048      0.29      45      94 ..     162     211 ..     141     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.1
                HHHHHHHHHH...HHHHHHHHHHHHH CS
       DUF16 35 rLkkieakvdklgeqinkleqkvekq 60
                 L+++e+ +++l+e ++ l   v++ 
  CCE27760.1 49 ALTDLETSLASLDEDLSDLDASVQAI 74
                56777777777777777777666654 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00048
                 ...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHH CS
       DUF16  45 klgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqk 94 
                  ++e+++ ++q+v ++  +  ++  e + qge l+ vdet+e +   Lq+
  CCE27760.1 162 EQDEHLEGVHQTVGNLKRQAGDMGRELEEQGEMLDMVDETVERVGGRLQN 211
                 56777777888888888888888888888888888888888888777776 PP

>> APG17  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0039       2.4     134     189 ..      45     111 ..      16     112 .. 0.72
   2 ?    5.6   0.3     0.012         7      47      97 ..     169     219 ..     152     227 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0039
                 HHHHHHHHHHTTHH..HHHHHHHHHHH............-------.STCCHHHHHHHHHHHHHHHHHH CS
       APG17 134 elqaaqkkldssllefdtdlrelkkel............sksksks.essslipellkelesleeemAs 189
                 el +a ++l++sl ++d+dl++l+ ++            s  + +    + l++e+  e+e+  +e+As
  CCE27760.1  45 ELASALTDLETSLASLDEDLSDLDASVqaiqanptqygvS--PAELaRRKRLVQEIGGEMEDMRQELAS 111
                 5556666666666666666666666666666666877542..333358899999999999999999986 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHIIIIIIIIIIIIIIIIIHHHHHHHHHHHHHHHHHHHHHTS CS
       APG17  47 glkqQlkllekirkslerklekgkeefkdlikeldaanerLektlekLrkt 97 
                 g++q +  l++ +  ++r+le+  e ++ ++++++++ +rL++ ++kL ++
  CCE27760.1 169 GVHQTVGNLKRQAGDMGRELEEQGEMLDMVDETVERVGGRLQNGMQKLGHV 219
                 555666666666666666666666666666666666666666666666554 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0023       1.4     164     225 ..      45     112 ..      40     122 .. 0.85
   2 ?    3.1   0.6     0.059        35     182     242 ..     156     215 ..     149     226 .. 0.48

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0023
        Spc7 164 eldellpeleeekaeleeeleklqeaaeeles......idkeeLeelreelaelkaeieekkkelael 225
                 el ++l +le+  a+l e l +l + ++ +++      + ++eL+  ++ ++e+  e+e  ++ela++
  CCE27760.1  45 ELASALTDLETSLASLDEDLSDLDASVQAIQAnptqygVSPAELARRKRLVQEIGGEMEDMRQELASK 112
                 56778888888899999999999998888888888888999999999999999999999999999875 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.059
        Spc7 182 eleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeq 242
                 +l +++e+ e le +  + + +l+++  +   e+ee+ ++l+ + e +e++  ++++  ++
  CCE27760.1 156 QLGMMREQDEHLEGVH-QTVGNLKRQAGDMGRELEEQGEMLDMVDETVERVGGRLQNGMQK 215
                 4444444444444433.23455555555555555555555555555555555554444444 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.032        19      36      97 ..      49     110 ..      12     119 .. 0.69
   2 ?    8.3   0.3     0.002       1.2      25     107 ..     151     227 ..     146     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.032
        HemX  36 evaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqls 97 
                   ++l++ la+l++ l+ ++a+ +  q   +++     +l+++++++++   ++e ++q+l+
  CCE27760.1  49 ALTDLETSLASLDEDLSDLDASVQAIQANPTQYGVSPAELARRKRLVQEIGGEMEDMRQELA 110
                 33556666666666666666666666666666666666666666666666666666666665 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.002
        HemX  25 lgqqqvqeltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlskvsgaerkdW 107
                 +++qq+     ++ e +++l+ ++q+   v ++k+q  ++ ++l+++ e l+   +++e    +l++  q+l +v+ ++++ W
  CCE27760.1 151 FEHQQQ---LGMMREQDEHLEGVHQT---VGNLKRQAGDMGRELEEQGEMLDMVDETVERVGGRLQNGMQKLGHVMRQNEDRW 227
                 455553...33334444555555555...5559999***************************************99999999 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.078        47       7      39 ..      44      76 ..      39      77 .. 0.84
   2 ?    4.9   0.0      0.05        30       3      33 ..      82     112 ..      80     118 .. 0.89
   3 ?    1.4   0.1      0.63   3.7e+02      48      80 ..     150     183 ..     144     193 .. 0.63
   4 ?    2.6   0.0      0.27   1.6e+02      51      79 ..     172     200 ..     162     207 .. 0.57
   5 ?    0.9   0.1      0.91   5.5e+02      14      43 ..     200     229 ..     191     229 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.078
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGC CS
      WXG100  7 eelrqaaarfqkqaeeledelqrlkaevdalqs 39
                 el++a +++ ++ ++l + l++l+a+v+a+q+
  CCE27760.1 44 PELASALTDLETSLASLDEDLSDLDASVQAIQA 76
                578888889999999999999999999999987 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.05
                 CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100   3 kvdpeelrqaaarfqkqaeeledelqrlkae 33 
                  v+p+el+   + +q++ +e+ed+ q+l+++
  CCE27760.1  82 GVSPAELARRKRLVQEIGGEMEDMRQELASK 112
                 5899***********************9987 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.63
                 HHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  48 afqaefe.ewkqaaqklvdaLeeisealkqaana 80 
                 +f+ +++  +++++++  ++ +++  +lk+ a  
  CCE27760.1 150 EFEHQQQlGMMREQDEHLEGVHQTVGNLKRQAGD 183
                 5666666666666666666666666666665544 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  51 aefeewkqaaqklvdaLeeisealkqaan 79 
                 ++  ++k++a ++ ++Lee +e l+++ +
  CCE27760.1 172 QTVGNLKRQAGDMGRELEEQGEMLDMVDE 200
                 34445555555566666655555555555 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.91
                 HHHHHHHHHHHHHHHHHHHHHHHCGCGCTH CS
      WXG100  14 arfqkqaeeledelqrlkaevdalqsgWsG 43 
                  ++ +  ++l++  q+l + + + ++ WsG
  CCE27760.1 200 ETVERVGGRLQNGMQKLGHVMRQNEDRWSG 229
                 566677788888888888888888888887 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.33     2e+02     667     699 ..      44      76 ..      10      85 .. 0.62
   2 ?    8.8   0.0   0.00059      0.35     357     434 ..     170     246 ..     155     249 .] 0.71

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.33
    Prominin 667 lplessvkklkksvkkldeensdlqesikklla 699
                 ++l s++ +l+ s+ +lde+ sdl +s++ + a
  CCE27760.1  44 PELASALTDLETSLASLDEDLSDLDASVQAIQA 76 
                 346666666666666666666666666666554 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00059
    Prominin 357 taevvpdlkkalakgreqikklakkiprealdavisdle.nterssktfddvvekyekyrwligli.vcsllllivvili 434
                 ++++v +lk++  + + +++++ +++  +++d++++ +  ++++ +++  +v+ + +++rw + +i v +++l+ v++l+
  CCE27760.1 170 VHQTVGNLKRQAGDMGRELEEQGEML--DMVDETVERVGgRLQNGMQKLGHVM-RQNEDRWSGWCIgVLIFVLILVLFLL 246
                 56778899999999999999999988..9**********66666666555555.55666666555415555555555544 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.13        75      13      50 ..      39      75 ..      28     117 .. 0.75
   2 ?    7.4   0.2     0.006       3.6      18      71 ..     161     214 ..     150     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.13
                ...........XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1 13 ainqdpallkedlskieaevsaleellnklkkelqeee 50
                ++ ++p+l  + l ++e+++ +l e l++l + +q  +
  CCE27760.1 39 TDPSSPEL-ASALTDLETSLASLDEDLSDLDASVQAIQ 75
                34445555.78888999999999999999988888765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.006
                 ......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XX CS
        SKA1  18 pallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqek.lq 71 
                 ++   e l+ + ++v  l+++  ++ +el+e+ e+++ + + +e+   + ++ +q
  CCE27760.1 161 REQ-DEHLEGVHQTVGNLKRQAGDMGRELEEQGEMLDMVDETVERVGGRLQNgMQ 214
                 444.6789******************************99999987644444444 PP

>> Dynamitin  Dynamitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.091        55     337     364 ..      48      75 ..      33     121 .. 0.62
   2 ?    7.1   0.1     0.005         3     335     384 ..     170     219 ..     165     222 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.091
   Dynamitin 337 qtLteleeeqkeiseelkslkelLekve 364
                 + Lt+le++ ++++e+l++l+  ++ ++
  CCE27760.1  48 SALTDLETSLASLDEDLSDLDASVQAIQ 75 
                 3344444444444444444444444333 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.005
   Dynamitin 335 fsqtLteleeeqkeiseelkslkelLekveeslkenletvkkNvesleer 384
                 + qt+ +l ++  ++  el+++ e+L  v+e+++     +++ +++l   
  CCE27760.1 170 VHQTVGNLKRQAGDMGRELEEQGEMLDMVDETVERVGGRLQNGMQKLGHV 219
                 579******************************99999999988888765 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0027       1.6      16      80 ..      45     109 ..      41     112 .. 0.93
   2 ?    3.3   2.0      0.15        89      52      95 ..     160     203 ..     151     223 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0027
  TMF_TATA_bd  16 rlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqery 80 
                  +l s++  lE+ lasl e+l+ l a+ +++++   +   +  el++ k+ ++e+  e+e++++++
   CCE27760.1  45 ELASALTDLETSLASLDEDLSDLDASVQAIQANPTQYGVSPAELARRKRLVQEIGGEMEDMRQEL 109
                  58999******************************************************999875 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.15
  TMF_TATA_bd  52 lmkeneelkelkkeleelekeleelqeryetlLellGeksEeve 95 
                  + ++ e l+  ++++ +l+++  ++ +++e+  e+l   +E ve
   CCE27760.1 160 MREQDEHLEGVHQTVGNLKRQAGDMGRELEEQGEMLDMVDETVE 203
                  33556677888888888888888888888877777776666665 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00063      0.37     172     242 ..     174     249 .]     101     249 .] 0.68

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00063
        Use1 172 arnLKenslaasqiikkDtetlsksekaadqnlaslkkeserleeh...skskvk..cllwlllfvvlvvFismvl 242
                 + nLK ++  +++ + +  e+l+   + +++   +l++  ++l +    ++ +++  c+ +l+++++lv+F+ ++l
  CCE27760.1 174 VGNLKRQAGDMGRELEEQGEMLDMVDETVERVGGRLQNGMQKLGHVmrqNEDRWSgwCIGVLIFVLILVLFLLVIL 249
                 569***************************************9885112344444113334444555566776665 PP

>> V-SNARE  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1     0.003       1.8      12      53 ..      34      76 ..      32      82 .. 0.87
   2 ?    1.5   0.1      0.67     4e+02      16      40 ..      84     108 ..      74     111 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.003
     V-SNARE 12 larlsslag.eerkaalreiekkldeaeelldqMelEvrnlps 53
                +++ls+ ++  e  +al ++e++l +++e l+ ++  v+ +++
  CCE27760.1 34 IRSLSTDPSsPELASALTDLETSLASLDEDLSDLDASVQAIQA 76
                7888999986799**************************9954 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.67
     V-SNARE  16 sslageerkaalreiekkldeaeel 40 
                 s+++ + rk++++ei  + +++++ 
  CCE27760.1  84 SPAELARRKRLVQEIGGEMEDMRQE 108
                 4444469********9999988765 PP

>> SLX9  Ribosome biogenesis protein SLX9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.8    0.0025       1.5      50     120 ..      45     118 ..      35     228 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0025
        SLX9  50 sLadaLpdleeeege.kkekkekeqaqqgkvkkaekslkskpgalkrkkklek...kEmerfkkvLahpsfksnp 120
                 +La+aL dle++  + +++ ++  ++ q+ +  ++ + + +p  l r+k+l++   +Eme +++ La++++ s  
  CCE27760.1  45 ELASALTDLETSLASlDEDLSDLDASVQAIQANPT-QYGVSPAELARRKRLVQeigGEMEDMRQELASKAGPSTG 118
                 45555555554444444444444444444444433.678888888888888763336999999999988776655 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.09        54      64      92 ..      47      75 ..      40      78 .. 0.68
   2 ?    6.1   0.2     0.023        14      30      74 ..     161     205 ..     152     226 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.09
     BLOC1_2 64 lqqidqiekqvteLeeavseLDeyskeLE 92
                 + + ++e+++++L e  s LD+ +++++
  CCE27760.1 47 ASALTDLETSLASLDEDLSDLDASVQAIQ 75
                45666777777777777777777666655 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.023
     BLOC1_2  30 eaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqv 74 
                 +++ e+ + + + + +l++++ ++ ++ ee  ++l+ +d+  ++v
  CCE27760.1 161 REQDEHLEGVHQTVGNLKRQAGDMGRELEEQGEMLDMVDETVERV 205
                 67788999999999**********997777777777777666665 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2    0.0085       5.1      99     161 ..      45     110 ..      29     113 .. 0.70
   2 ?    5.0   0.8     0.043        25     110     156 ..     152     198 ..     149     227 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0085
       ATG16  99 elaqrllelneelqkleeklkedeerlaeleaeraal...etklkdreeelrekeklvqdlqDEls 161
                 ela+ l++l+++l+ l+e l+  ++++++++a+ ++      +l++r+  ++e    ++d++ El+
  CCE27760.1  45 ELASALTDLETSLASLDEDLSDLDASVQAIQANPTQYgvsPAELARRKRLVQEIGGEMEDMRQELA 110
                 778888888888888888888888777777777666511145666666666666666666666665 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.043
       ATG16 110 elqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdl 156
                 e+q++   ++e++e l+ +++++ +l+++  d   el+e+ ++++++
  CCE27760.1 152 EHQQQLGMMREQDEHLEGVHQTVGNLKRQAGDMGRELEEQGEMLDMV 198
                 66677777889999999999999999999999999999999888844 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.007       4.2     100     168 ..      45     112 ..      10     115 .. 0.86
   2 ?    5.4   0.4      0.03        18      69     128 ..     152     211 ..     141     228 .. 0.71
   3 ?   -1.7   0.7       4.4   2.6e+03      30      52 ..     224     246 ..     213     249 .] 0.69

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.007
     UPF0242 100 eLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqrsvlekr 168
                 eL+  l   e+ l+ l e+   L    +ai+++  ++   + ++La+++ l+qe   ++e+ r++l ++
  CCE27760.1  45 ELASALTDLETSLASLDEDLSDLDASVQAIQANPTQY-GVSPAELARRKRLVQEIGGEMEDMRQELASK 112
                 567778889999999999999**99999988766666.567899*********************9887 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.03
     UPF0242  69 kleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqeklea 128
                 + +++  ++ e+de+l+  ++++ +l+ +  ++ +el+++ e l    e  + +  +l++
  CCE27760.1 152 EHQQQLGMMREQDEHLEGVHQTVGNLKRQAGDMGRELEEQGEMLDMVDETVERVGGRLQN 211
                 556677788899999999999999999999888888877777777666665555555554 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 4.4
     UPF0242  30 qksWsllsiGlllaaaGsLllll 52 
                 ++ Ws   iG+l+ +   +l ll
  CCE27760.1 224 EDRWSGWCIGVLIFVLILVLFLL 246
                 67899999999887665443333 PP

>> MtrG  Tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.11        65       8      43 ..      84     119 ..      78     122 .. 0.84
   2 ?    3.6   1.7     0.099        59      14      62 ..     190     241 ..     183     244 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.11
        MtrG   8 dpddfnevkkrLdeieekvefvnsEiaqriGkkvGR 43 
                 +p++  + k+  +ei   +e +  E+a ++G ++GR
  CCE27760.1  84 SPAELARRKRLVQEIGGEMEDMRQELASKAGPSTGR 119
                 5666666666678999*******************9 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.099
        MtrG  14 evkkrLdeieekvefvnsEi...aqriGkkvGRdiGilYGlviGliillvyi 62 
                 e  + Ld ++e+ve v + +   +q++G+ +  +     G +iG++i+++ +
  CCE27760.1 190 EQGEMLDMVDETVERVGGRLqngMQKLGHVMRQNEDRWSGWCIGVLIFVLIL 241
                 5557799999999998876622257888877777777889999999888765 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0016      0.98       8      43 ..      45      80 ..      39     104 .. 0.85
   2 ?    0.2   0.2       1.5     9e+02      25      43 ..     172     190 ..     152     223 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0016
       Spc24  8 riakelsdleselesleselaelkeeleeleeesee 43
                ++a +l+dle++l sl + l++l + ++ ++ +  +
  CCE27760.1 45 ELASALTDLETSLASLDEDLSDLDASVQAIQANPTQ 80
                68999***********************99988776 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.5
       Spc24  25 selaelkeeleeleeesee 43 
                 ++  +lk++  ++ +e ee
  CCE27760.1 172 QTVGNLKRQAGDMGRELEE 190
                 2222222222222222222 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.9    0.0085       5.1       2      56 ..      53     112 ..      52     115 .. 0.65
   2 ?    4.9   0.4     0.036        21     126     171 ..     173     217 ..     153     230 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0085
                     HHHCCCCHHHHHCCHHHCHHCHHHH.HHHHHHHHHHHHHHHH....HHHHHHHHHHCCCC CS
  Apolipoprotein   2 leesldelkayaeeleeqlaplaqe.lrdrlskeleelrarl....raeleevrarlepy 56 
                     le sl++l++ +++l + +  + ++ ++  +s +  + r+rl    + e+e+ r+ l+++
      CCE27760.1  53 LETSLASLDEDLSDLDASVQAIQANpTQYGVSPAELARRKRLvqeiGGEMEDMRQELASK 112
                     567778888888888888887755335555544444444444444499******999986 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.036
                     HHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHH CS
  Apolipoprotein 126 lrqklaerleelkeslaphaeeveerlssrveelrekleeqaeelr 171
                     ++ +l++++ +++++l+++  e+ ++++++ve++  +l    ++l 
      CCE27760.1 173 TVGNLKRQAGDMGRELEEQG-EMLDMVDETVERVGGRLQNGMQKLG 217
                     22223333333333333331.1112333333333333333333333 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.11        66      57      88 ..      46      77 ..      24     113 .. 0.55
   2 ?    8.2   0.4    0.0039       2.3      53     103 ..     166     216 ..     154     225 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.11
     DUF1664 57 laatkrhLssridrvdkkldeqkeiskeikee 88
                la++  +L+  ++++d+ l +  +  ++i+++
  CCE27760.1 46 LASALTDLETSLASLDEDLSDLDASVQAIQAN 77
                34444444444444444444444444444333 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0039
     DUF1664  53 vseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedv 103
                   e +++t  +L+++   ++++l+eq e+   ++e v++v + l++  +++
  CCE27760.1 166 HLEGVHQTVGNLKRQAGDMGRELEEQGEMLDMVDETVERVGGRLQNGMQKL 216
                 445566666777777888888888888888888888888888777765555 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.023        14       2      57 ..      55     110 ..      48     114 .. 0.85
   2 ?    3.3   1.2      0.13        81      49     103 ..     171     225 ..     153     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.023
       DHR10   2 eslaeekeelaelErkarelqakidalqvvekdlrsciklleeieaelakleeakk 57 
                 +sla+  e l++l++  +++qa    ++v  ++l++  +l++ei  e++ ++++ +
  CCE27760.1  55 TSLASLDEDLSDLDASVQAIQANPTQYGVSPAELARRKRLVQEIGGEMEDMRQELA 110
                 56777788899999999999999999999999999999999999999999888765 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.13
       DHR10  49 lakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaee 103
                  + +   k+++ +   +lee+++ l  ++ + er+  +l+n  +kl ++ +q e+
  CCE27760.1 171 HQTVGNLKRQAGDMGRELEEQGEMLDMVDETVERVGGRLQNGMQKLGHVMRQNED 225
                 5556667888999999999999999999999999999999999999999999887 PP

>> Wtap  WTAP/Mum2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1      0.12        71     130     155 ..      45      70 ..      39      75 .. 0.85
   2 ?    0.3   0.0         1     6e+02     120     142 ..      87     109 ..      82     115 .. 0.71
   3 ?    5.2   0.8      0.03        18     104     153 ..     156     206 ..     152     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.12
        Wtap 130 elkkaleeleelleeleeevevlqst 155
                 el +al++le  l++l+e++++l  +
  CCE27760.1  45 ELASALTDLETSLASLDEDLSDLDAS 70 
                 78899999999999999999988765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1
        Wtap 120 elalqkkfveelkkaleeleell 142
                 ela +k++v+e+  + e++++ l
  CCE27760.1  87 ELARRKRLVQEIGGEMEDMRQEL 109
                 66777777777777777776655 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.03
        Wtap 104 ELgkvleeg.rvakLeselalqkkfveelkkaleeleelleeleeevevlq 153
                  Lg ++e++ +++ + + +  +k+++ ++ ++lee  e+l+ ++e ve++ 
  CCE27760.1 156 QLGMMREQDeHLEGVHQTVGNLKRQAGDMGRELEEQGEMLDMVDETVERVG 206
                 56777766526788999999****************************975 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.054        32      63      93 ..      45      75 ..      41      79 .. 0.87
   2 ?   -1.4   0.0       3.6   2.2e+03      51      68 ..      92     109 ..      83     112 .. 0.64
   3 ?    4.8   1.8     0.045        27       5      49 ..     153     197 ..     150     225 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.054
  CENP-F_leu_zip 63 elaeelreleldLvalrsekeeLekelqkkq 93
                    ela+ l++le+ L++l ++  +L+ ++q  q
      CCE27760.1 45 ELASALTDLETSLASLDEDLSDLDASVQAIQ 75
                    7899999999999999999999999998776 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
  CENP-F_leu_zip  51 kaevetlkeeieelaeel 68 
                     k  v+++  e+e +++el
      CCE27760.1  92 KRLVQEIGGEMEDMRQEL 109
                     555666666666666666 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.045
  CENP-F_leu_zip   5 klhvlekLKeserkadsLkdkvenLerelemseenqekvileaEt 49 
                     ++++l+ ++e  ++ + +++ v nL+r+  ++++++e+     + 
      CCE27760.1 153 HQQQLGMMREQDEHLEGVHQTVGNLKRQAGDMGRELEEQGEMLDM 197
                     566666667777777777777777777766666666654433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1223  (0.0682135); expected 358.6 (0.02)
Passed bias filter:                      981  (0.0547158); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 1700.33
//
Query:       CCE27761.1  [L=473]
Description: probable homocitrate synthase, mitochondrial precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-73  246.8   3.4    4.4e-66  223.2   1.4    2.6  3  HMGL-like      HMGL-like
  ------ inclusion threshold ------
       0.17   11.5   0.0       0.38   10.3   0.0    1.5  1  Peptidase_C47  Staphopain peptidase C47


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.2   1.4   4.9e-70   4.4e-66       1     225 [.      59     277 ..      59     281 .. 0.98
   2 !   22.7   0.0     7e-09   6.3e-05     220     264 .]     297     344 ..     295     344 .. 0.86
   3 ?   -2.2   0.0      0.27   2.5e+03     162     178 ..     375     391 ..     361     397 .. 0.83

  Alignments for each domain:
  == domain 1  score: 223.2 bits;  conditional E-value: 4.9e-70
                 B-EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B..--EE-SSHHHHHHHHH....TT-SEEEEEEES CS
   HMGL-like   1 kvkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkarilalvrarekdikaavealkgagakrvhvfiat 99 
                 k++i+++tLR+Geq+++a +++e k++ia aL+++gv++iE++ paase+++++++ai++ + ka+il++vr++++d k av+    +g++ v+v+i t
  CCE27761.1  59 KFQIIESTLREGEQFANAFFDTETKIKIATALADFGVEYIELTSPAASEQSRKDCEAICNLGLKAKILTHVRCTMEDAKLAVA----TGVDGVDVVIGT 153
                 579********************************************************************************....************ PP

                 -HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS---HHHHHHHHHHHHHHS-.GGGEEEEE CS
   HMGL-like 100 selhlkaklkkdreevakkaeeavkaarslgkdvelsledasrtdleflaevveaaeeaGatriniaDtvGvltPneaaelisalkervkdkvilsvHc 198
                 s+  ++++++kd++++ k a e++++++s g +v++s ed+ r+dl +l+ +++a++++G+ r+ +aDtvG++tP+++++l+++l+ +v+  +++++H+
  CCE27761.1 154 SKHLREHSHGKDMAYITKTAIEVIEYVKSQGREVRFSSEDSFRSDLVDLLSLYKAVDAVGVHRVGVADTVGCATPRQVYDLVRTLRGVVS--CDIETHF 250
                 ******************************************************************************************..******* PP

                 B-TTS-HHHHHHHHHHTT--EEEEBTT CS
   HMGL-like 199 HndlGlAvantlaAveaGadrvdgtvn 225
                 Hnd+G+A+an++aA+eaGa+r + +v 
  CCE27761.1 251 HNDTGCAIANAYAALEAGATRTSPAVK 277
                 ********************9887775 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 7e-09
                 EEEBTTS--SSBBB-BH.HHHHHHHHHTT..-B----HHHHHHHHHHH CS
   HMGL-like 220 vdgtvnGlGeraGnaal.eelvaalealg..vdtgldlqklrsiaalv 264
                 +d++v+G+Ger+G ++l   l+ ++ + +  v + ++l+kl +i++lv
  CCE27761.1 297 IDTSVLGIGERNGITPLgGLLARMIVGSHeyVTSRYKLHKLKEIEDLV 344
                 9****************55556666666699**************997 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.27
                 EEEEEETTS---HHHHH CS
   HMGL-like 162 riniaDtvGvltPneaa 178
                 ++n+++t ++++P +++
  CCE27761.1 375 ILNMPSTYEIINPADFG 391
                 789**********9986 PP

>> Peptidase_C47  Staphopain peptidase C47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   4.2e-05      0.38      51      86 ..     157     192 ..     149     223 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.2e-05
  Peptidase_C47  51 lypelreqdlqftgltpnemiefGksqGrdiqyler 86 
                    l  + +++d+ + + t+ e+ie+ ksqGr++++   
     CCE27761.1 157 LREHSHGKDMAYITKTAIEVIEYVKSQGREVRFSSE 192
                    55667899**********************998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3218.01
//
Query:       CCE27762.1  [L=524]
Description: probable cytochrome P450 monooxygenase (lovA) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-37  129.9   0.0    1.9e-37  129.1   0.0    1.3  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.0     1e-41   1.9e-37     178     445 ..     223     497 ..     146     509 .. 0.82

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 1e-41
                 HHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHH...HHHHHHHHHHHHHHCHCHC..SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHH CS
        p450 178 eelssllskssvqllllfpllkylptkllrklkeavkk...lkdlldklieerretldsa..kksrrdfldalllakkekkgesklsdeelaatvlell 271
                 + ++s++++++  +++++++l++l+ ++  ++++a+++   +  +l++li+ rr++  +a  k ++    +++++   + ++e +l  +  +a  ++l 
  CCE27762.1 223 WSVNSVMAAFM--INMVPRFLRPLIRRFSPRVQQARRDyeaARAFLEPLIHARRASRLEAltKGCEPPVFNDIVDWI-DAEDE-ELACDP-VALQMVLG 316
                 33445554433..4444447777777777777777765111567999999999999999988555555555555554.33343.566555.55667899 PP

                 HHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHH CS
        p450 272 faGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlya 369
                 +a+v+Tt+++++ +L +La +P++   lr+E+   l++ +  +   l +l+++d +ikE LRl p+ ++++ R++++dv++++   i+kG +v+v + +
  CCE27762.1 317 VAAVHTTAAVVTNTLVYLASQPSTLVPLRQEMAAELQK-SGCQAGALRNLKLMDSAIKECLRLKPPGVFGMHRAALQDVTLPDgLRIRKGERVFVDIPH 414
                 9******************************9999988.579*****************************************9*************99 PP

                 HHT-TTTSSSTTS--GGGGB-TTS.........CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGE CS
        p450 370 lhrdpevfpnPeeFdpeRFldekg.........nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdppp 445
                 + rdp+++++P++Fd  RFl+ +               s ++l+FG G  +C+G+ +A + +k++l++lL ++++++ p+++ + 
  CCE27762.1 415 M-RDPDLYEEPDTFDMYRFLRMRSdpdlaikapL-VNTSPEHLAFGHGTQACPGRFFAAVLIKVVLSHLLLKYDWQVAPGSQTES 497
                 8.78*******************9******9952.478*****************************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3894.51
//
Query:       CCE27763.1  [L=329]
Description: uncharacterized protein CPUR_01237 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-47  161.8   0.0    3.3e-47  161.4   0.0    1.1  1  Y_phosphatase3  Tyrosine phosphatase family
     0.0011   18.6   0.0     0.0018   17.8   0.0    1.3  1  Y_phosphatase2  Tyrosine phosphatase family
  ------ inclusion threshold ------
      0.081   13.4   0.1       0.14   12.6   0.1    1.3  1  PSII_Pbs31      Photosystem II Psb31 protein
       0.17   10.8   0.0        0.3   10.0   0.0    1.3  1  Myotub-related  Myotubularin-like phosphatase domain


Domain annotation for each model (and alignments):
>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   0.0   7.3e-51   3.3e-47       2     231 ..      37     326 ..      36     327 .. 0.83

  Alignments for each domain:
  == domain 1  score: 161.4 bits;  conditional E-value: 7.3e-51
  Y_phosphatase3   2 plegvsNfRDlGg..............yptadgrkvrpgvlyRsaelsklteadlakLadlgirtviDLRspeErea.eap.......legaryv 74 
                     +++gv+N+RD+Gg               ++++  k+rpg+++Rs++l+++te+++++L++l++++++DLR ++E+ + +a        +      
      CCE27763.1  37 SIDGVFNVRDFGGhattmglssspsssSASSSAVKTRPGIILRSSHLEHITEEGVQQLRALHVSRIFDLRGAQESGQyKAIaqkynqkT------ 125
                     689*******************9987544455555***************************************766422222233330...... PP

  Y_phosphatase3  75 hlpv...................................eea.aeeekeeeeaeetlaelYrelle..sakkayrkvfealad.ee.pvlfHCta 129
                                                            +++ +++++  e+++e++ e Y +l+   +  +a+++++++l++  + ++l+HCt 
      CCE27763.1 126 ---AggggggrgfdapspiaallplysavpfyavdeklsTRLeRHARAGGETSSESTPEQYLALALseAGIRAFQTIIRHLLAhPRqAILIHCTL 217
                     ...34555555555566667777777777779999887523337777888899999999999998854556************5448******** PP

  Y_phosphatase3 130 GKDRTGvlaalllsllGvdeedivaDYlltneyleelrerlkakleeellaea.......leellsvrpeyleaaldaieekygsvegYlreelg 217
                     GKDRTG++ alllsl+Gv++e+i+ +Y+l++++le++ +++ + l     + a       ++ l +++++++  +l+a++e+ g+++gY+r+ +g
      CCE27763.1 218 GKDRTGIVFALLLSLAGVPDEAIATEYTLSEQGLEPAGAKMVSVLGTLCPDLAletvtrtVDGLKRCHAKCMLGFLRALRESCGGANGYARDLCG 312
                     ***********************************999999666666544444788899999********************************* PP

  Y_phosphatase3 218 lseeeiealrerll 231
                     lse ei+ +re l+
      CCE27763.1 313 LSEPEIACIREILT 326
                     **********9986 PP

>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.1e-07    0.0018      81     129 ..     198     246 ..     181     252 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.1e-07
                     HHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHH CS
  Y_phosphatase2  81 kalklllnkenypvllhckrGkhrtglvigclRklqkWslasilnEyrr 129
                      +++ ll +  + +l+hc+ Gk rtg+v + l  l + +   i  Ey +
      CCE27763.1 198 TIIRHLLAHPRQAILIHCTLGKDRTGIVFALLLSLAGVPDEAIATEYTL 246
                     456678889999********************99999999999999975 PP

>> PSII_Pbs31  Photosystem II Psb31 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.2e-05      0.14       7      38 ..      91     122 ..      87     126 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.2e-05
  PSII_Pbs31   7 veraRaiYGsRiarLksAvekGdfaavveekn 38 
                 v++ Ra+  sRi++L++A e G ++a+++  n
  CCE27763.1  91 VQQLRALHVSRIFDLRGAQESGQYKAIAQKYN 122
                 6788***********************99876 PP

>> Myotub-related  Myotubularin-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   6.7e-05       0.3     223     252 ..     199     228 ..     187     233 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 6.7e-05
                     HHHHHHHCS---EEEE-SSSSSHHHHHHHH CS
  Myotub-related 223 liaksvelekssvLvhcsdGwDrtsqlssl 252
                     +i + ++  ++ +L+hc+ G Drt ++ +l
      CCE27763.1 199 IIRHLLAHPRQAILIHCTLGKDRTGIVFAL 228
                     455566778899***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2428.75
//
Query:       CCE27764.1  [L=204]
Description: uncharacterized protein CPUR_01238 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-06   26.9   0.3      8e-06   26.0   0.3    1.4  1  HTH_Tnp_Tc3_2  Transposase
    0.00038   21.0   0.8    0.00038   21.0   0.8    2.0  2  HTH_32         Homeodomain-like domain
     0.0006   19.8   1.3        1.6    8.8   0.0    3.3  3  HTH_7          Helix-turn-helix domain of resolvase
     0.0025   17.6   0.1      0.074   12.9   0.0    2.4  2  HTH_23         Homeodomain-like domain
  ------ inclusion threshold ------
      0.023   14.8   0.0      0.074   13.2   0.0    1.8  2  HTH_28         Helix-turn-helix domain
       0.13   12.5   0.0       0.18   12.0   0.0    1.1  1  Sigma_reg_C    Sigma factor regulator C-terminal


Domain annotation for each model (and alignments):
>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.3   2.7e-09     8e-06       2      48 ..      78     121 ..      77     126 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.7e-09
  HTH_Tnp_Tc3_2   2 rrIvrlvrkdPritlreLanelkeeGksvsreTirrrLrkaglkkrk 48 
                    rrI  +++++P+i++reL+++      +vs++Ti r+L+++g  + +
     CCE27764.1  78 RRINAQIKQEPSISMRELQQRC---APHVSAQTIVRYLKTNGVTHER 121
                    89********************...****************987765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.67     2e+03      29      70 ..      15      48 ..       3      51 .. 0.53
   2 !   21.0   0.8   1.3e-07   0.00038       2      73 .]      47     112 ..      46     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.67
      HTH_32 29 lsdevrariiallreeprWsprqlaarlaeregvkvShstvy 70
                 s+++r r+ a   ++   s+ q+a    +++   +S+s vy
  CCE27764.1 15 SSPRTRNRVWAAF-SA-GKSAAQIAI---DEG---ISPSLVY 48
                5666666666655.43.345555554...333...6666665 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.3e-07
      HTH_32   2 vsrwlkRyneeGle.gLkdrprrgrprklsdevrariiallreeprWsprqlaarlaeregvkvShstvyriL 73 
                 v+   +R+  +  + g+ +   rgrp+kl++   +ri a +++ep  s+r+l++r  + +   vS  t+ r+L
  CCE27764.1  47 VYGIKRRFTHQ--DwGISPT-GRGRPSKLTKHDIRRINAQIKQEPSISMRELQQRC-APH---VSAQTIVRYL 112
                 56667777644..4488887.789*****************99**99999999999.555...9999999987 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00055       1.6      12      42 ..      21      51 ..      12      53 .. 0.83
   2 !    7.7   0.0    0.0012       3.7       1      14 [.      67      80 ..      67      91 .. 0.88
   3 ?    0.0   0.1      0.31   9.2e+02      33      44 ..     103     114 ..     102     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00055
                GGGGSSTTTT--STTTSSSS---SSSS--SS CS
       HTH_7 12 nrvvkLleeGisiskIAkevnisRsTvYRyl 42
                nrv +  ++G s+++IA+  +is+s vY ++
  CCE27764.1 21 NRVWAAFSAGKSAAQIAIDEGISPSLVYGIK 51
                667777789****************999665 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0012
                S---SS-HHHHGGG CS
       HTH_7  1 GRpsklskndinrv 14
                GRpskl+k+di r+
  CCE27764.1 67 GRPSKLTKHDIRRI 80
                9********99887 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.31
                 --SSSS--SS-- CS
       HTH_7  33 isRsTvYRylad 44 
                 +s +T+ Ryl +
  CCE27764.1 103 VSAQTIVRYLKT 114
                 799******986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.5e-05     0.074      15      42 ..      28      55 ..      21      62 .. 0.88
   2 ?    2.1   0.0     0.061   1.8e+02      28      40 ..     102     114 ..      86     123 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
      HTH_23 15 aeGlsvreIAreLgvsrrTvyrwlkryr 42
                  G+s ++IA   g+s++ vy +++r+ 
  CCE27764.1 28 SAGKSAAQIAIDEGISPSLVYGIKRRFT 55
                349***********************94 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.061
      HTH_23  28 gvsrrTvyrwlkr 40 
                 +vs +T+ r+lk+
  CCE27764.1 102 HVSAQTIVRYLKT 114
                 7999999999997 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.5e-05     0.074      11      36 ..      29      54 ..      24      69 .. 0.86
   2 ?   -3.9   0.0       5.5   1.7e+04       4      12 ..     107     116 ..     104     119 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.5e-05
      HTH_28 11 aGhsvreaArelgisrrtvyrWikry 36
                aG+s++++A   gis++ vy+  +r+
  CCE27764.1 29 AGKSAAQIAIDEGISPSLVYGIKRRF 54
                799**********************9 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 5.5
      HTH_28   4 eiiklla.aG 12 
                 +i+++l+ +G
  CCE27764.1 107 TIVRYLKtNG 116
                 4677766555 PP

>> Sigma_reg_C  Sigma factor regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.2e-05      0.18      30     128 ..      16     118 ..       7     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.2e-05
  Sigma_reg_C  30 kpknlkllWyavdteeeekkeedk.liseteaiGfkvnpsssekddkkkypkelekaeehfislLkylsdqeeivktleeslekek...lkerydyvk 123
                   p+  + +W a +++++  + + +  is++ ++G+k + +++++   ++   + +k ++h i  ++   +qe ++++ e ++  +     ++++ y+k
   CCE27764.1  16 SPRTRNRVWAAFSAGKSAAQIAIDeGISPSLVYGIKRRFTHQDWGISPTGRGRPSKLTKHDIRRINAQIKQEPSISMRELQQRCAPhvsAQTIVRYLK 113
                  5667778899999988776654334899********************9999999**********************8877777779999******** PP

  Sigma_reg_C 124 kngvk 128
                  +ngv 
   CCE27764.1 114 TNGVT 118
                  ***96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1509.01
//
Query:       CCE27765.1  [L=648]
Description: uncharacterized protein CPUR_01239 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-23   82.7   0.5    2.5e-22   79.6   0.5    2.2  1  Methyltransf_32  Methyltransferase domain
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.35   10.8   0.0    1.6  1  HTH_51           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.5   2.7e-26   2.5e-22       1     157 [.     143     382 ..     143     383 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 2.7e-26
  Methyltransf_32   1 kKlheverlaelvakllkelakesgaltv...vDvGaGkgYLsfvlalkeke.yklkvvgidakeelvekaekraeklgkkfnkrlsfaelsie 90 
                      kK+hev ++a  v++l k++++e++ +t+   vD+G+G+ YL+++la+   e y+ +vv+++ +e++v++a+ ++   g ++++++ ++++  +
       CCE27765.1 143 KKIHEVTNFADYVDRLSKDIHAENNGETIthyVDFGSGQNYLGRALAS---EpYNRHVVAVEGREDNVTAARGLDIPSGLAVKEKVMRNKKLWN 233
                      8*******************555554443333****************...77*********************99999888777766666666 PP

  Methyltransf_32  91 eatssktltkkve................................................................................. 103
                      ++ ++   + + +                                                                                 
       CCE27765.1 234 KILEAGGPNPHADpaaladavkqvaggeafdfrpreqitsavaaeegkgyvqyvagrldsgdlsdviskinlncddgavkkagegddkeeeekt 327
                      665544333333389999***********************************************************************99986 PP

  Methyltransf_32 104 aeeekeeqeekesvdvligLHaCdtltdtalrlale.keakllvlvpCCyhelae 157
                      + +++++ ++++   + i+ H C++l+  a+r  +  +e++++++v+CCy++++e
       CCE27765.1 328 EDKKESSIHKNKLKLMAISIHSCGNLSHYAIRSLVLnPEIRAIAIVGCCYNLMTE 382
                      6666667778889999****************98888****************98 PP

>> HTH_51  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.9e-05      0.35      12      43 ..     555     586 ..     544     590 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.9e-05
      HTH_51  12 ieetglagylkevlpkqteLvvalvveAFekL 43 
                 i++ +++ y +e+lp+++eL+v   + AF+ +
  CCE27765.1 555 ITDEEIQRYEDEFLPRKKELCVIWSLMAFSAM 586
                 7788999**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4492.08
//
Query:       CCE27766.1  [L=392]
Description: uncharacterized protein CPUR_01240 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-20   70.6   1.3      3e-14   52.5   0.1    2.5  2  ACT_7     ACT domain
  ------ inclusion threshold ------
       0.92    9.8   3.4        3.4    8.0   0.1    2.7  3  DUF1118   Protein of unknown function (DUF1118)


Domain annotation for each model (and alignments):
>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.1   3.3e-18     3e-14       4      65 .]     106     166 ..     103     166 .. 0.96
   2 !   16.8   0.1   4.9e-07    0.0044      15      64 ..     326     380 ..     313     381 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 3.3e-18
                 EEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE-SS-EEEEEEGGGHHHHHHHHHH CS
       ACT_7   4 dgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiStyrtdyiLVpeedlekAveaLhe 65 
                 + +i+lsv ++   +d++ +v +l+spLa+agI+if+i+ty++dyiL p+ +  ++++aLhe
  CCE27766.1 106 ESYIVLSVASA-AELDAPTRVLELTSPLAAAGIPIFFITTYYSDYILAPAHEQLNVIAALHE 166
                 789********.889**********************************************6 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4.9e-07
                 .---SS--HHHHHHHHH.....HTTT---EEEE-SS-EEEEEEGGGHHHHHHHHH CS
       ACT_7  15 glpfdvtGivaklaspL.....aeagIsifqiStyrtdyiLVpeedlekAveaLh 64 
                  lp++vtGiv  +++ L      +a  ++ ++St+r ++++ pe+++ +Av++L+
  CCE27766.1 326 TLPTEVTGIVCVVSGRLvhemdMKATSELSYLSTARAGVVILPEQQAIQAVKILE 380
                 6899**************************************************7 PP

>> DUF1118  Protein of unknown function (DUF1118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1   0.00038       3.4      35      77 ..     101     142 ..      93     166 .. 0.86
   2 ?   -0.4   0.1      0.16   1.4e+03      47      75 ..     309     338 ..     272     353 .. 0.78
   3 ?    1.5   0.2      0.04   3.5e+02      43      83 ..     333     373 ..     322     380 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00038
     DUF1118  35 llskAeelgllslaedaattsPgalaslalpllvaaiaavvlv 77 
                 + s+Ae+  +ls+a  a+   P+ ++ l+ pl  a+i + + +
  CCE27766.1 101 IWSHAESYIVLSVASAAELDAPTRVLELTSPLAAAGIPIFF-I 142
                 689****************************9999986543.3 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.16
     DUF1118  47 laedaatt.sPgalaslalpllvaaiaavv 75 
                 ++ d +t+ +P  l  ++lp  v +i++vv
  CCE27766.1 309 IVGDLTTVlTPIFLDLVTLPTEVTGIVCVV 338
                 444444432588888888888899988886 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.04
     DUF1118  43 gllslaedaattsPgalaslalpllvaaiaavvlvPddsta 83 
                 g++ ++  +   + +  a+  l+ l  a a vv++P+++++
  CCE27766.1 333 GIVCVVSGRLVHEMDMKATSELSYLSTARAGVVILPEQQAI 373
                 66666666666666666778899999999*******99854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3013.03
//
Query:       CCE27767.1  [L=320]
Description: uncharacterized protein CPUR_01241 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-32  110.5   0.0    8.5e-32  109.6   0.0    1.4  1  UPF0029     Uncharacterized protein family UPF0029
    6.8e-07   29.6   0.0      1e-06   29.0   0.0    1.2  1  RWD         RWD domain
  ------ inclusion threshold ------
       0.16   11.7   0.1       0.38   10.5   0.1    1.6  1  Sigma70_r2  Sigma-70 region 2


Domain annotation for each model (and alignments):
>> UPF0029  Uncharacterized protein family UPF0029
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.0   1.4e-35   8.5e-32       2     104 ..     188     299 ..     187     300 .. 0.94

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 1.4e-35
                 TEEEEEEEEE-SSHHHHHHHHHHH--..TT...SSEEEEEE....EE..........TTEE-TTSSTSHHHHHHHHHHTTB-SEEEEEEEE--SS--HH CS
     UPF0029   2 kSrFiavlaaveseeevkaileelkkenkk...athniyAyrlrqkvek......vnedsdddgEpaAGkkllelLekeklenvlvvvtRwfGGikLGp 91 
                 kS+F+a++a+v+s+ee+k++++ l++++kk   athni+A+r+r +  +      + +d+dddgE+aAG +ll+lL+ ++++ v+vvv+RwfGG+kLGp
  CCE27767.1 188 KSTFVARVARVSSPEEAKRYIAYLLATDKKtrgATHNITAWRIRAEGPAgagtelQFQDCDDDGETAAGGRLLHLLQVMDVWGVVVVVSRWFGGVKLGP 286
                 9*************************999999*********999988777777766677**************************************** PP

                 HHHHHHHHHHHHH CS
     UPF0029  92 grlraiseaarea 104
                 +r+ +i+ +ar+ 
  CCE27767.1 287 RRFAVINGVARDG 299
                 **********986 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.7e-10     1e-06       4     110 ..       6     115 ..       3     119 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.7e-10
                 HHHHHHHHHHSTTTC.CCCH.T--EE--S-EEEEEEECECCCC....TT-CEEEEEEEEE-SSTTSS--EEEEEECC.....SS-HHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxx RF
         RWD   4 eqEleaLesIypdef.evie.nenysikleikikldededeedsefeekkkpslkleiklpeeYPeeaPiislsste.....nlpkeqvksleekleel 95 
                  +E+ea++sIy+ +  +    +     ++ +k++ de  ++ +s   +++  s +l i++p +YP+ aPi+  ++       +  +++++ + + l+++
  CCE27767.1   6 LDEVEAINSIYGPDSlTPTTpDASSAHEYILKLPADEAFSSPNS--PTDSSTSSSLRIHFPDSYPSCAPIVVGTHHSsggvrGAGAKDLELFRTVLRDV 102
                 69*********666534444533333344456665555555444..678999*****************9999999988888788999999******** PP

                 HHHTTTS--CHHHHH CS
                 xxxxxxxxxxxxxxx RF
         RWD  96 aeenlgepvifalid 110
                  +   g +++f++++
  CCE27767.1 103 FQ--EGCVCLFDAVE 115
                 *9..89*****9987 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   6.4e-05      0.38      25      45 ..     101     121 ..      98     126 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.4e-05
                 HHHHHHHHHHHHHGGGTSTTT CS
  Sigma70_r2  25 DlvQeaflrlwraverfdper 45 
                 D+ Qe++++l++ave f++ r
  CCE27767.1 101 DVFQEGCVCLFDAVEEFTRRR 121
                 9****************9666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2586.47
//
Query:       CCE27768.1  [L=608]
Description: related to multicopper oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-38  130.4   2.7    8.3e-37  125.8   0.9    3.4  4  Cu-oxidase_3  Multicopper oxidase
    2.9e-32  111.3   3.5      3e-29  101.5   0.1    3.7  3  Cu-oxidase_2  Multicopper oxidase
    9.9e-18   64.8   0.0    2.3e-16   60.3   0.0    2.4  2  Cu-oxidase    Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.9   1.4e-40   8.3e-37       3     117 ..      71     188 ..      69     190 .. 0.94
   2 ?   -3.1   0.0       1.3   7.7e+03      31      66 ..     271     305 ..     265     312 .. 0.68
   3 ?   -1.4   0.0      0.38   2.3e+03      27      57 ..     469     499 ..     464     501 .. 0.70
   4 ?    1.8   0.0     0.038   2.3e+02      74     114 ..     538     577 ..     519     581 .. 0.79

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 1.4e-40
                   EEEEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-S...SS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S.-SEEEE CS
  Cu-oxidase_3   3 tektvsplggterevitvNgqfpgptievregdtvvvnvtNkl...dentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkq.qagtlw 95 
                   t++  +p+g   +e+ ++Ngqfpgpt+e+r+gd++ ++v N +   +++++ihwhG+ +++ + mDG+ g+tqc++ pg +f y+f+++q q+gt+w
    CCE27768.1  71 TREARRPDGVL-KETYLINGQFPGPTVEARSGDELHITVYNGItgsNDGVAIHWHGITMKGFNEMDGAVGITQCAVGPGRTFIYKFQIDQqQHGTFW 166
                   56667777777.9******************************998899***************************************99789**** PP

                   EEE--TTHHHTT-EEEEEEE-H CS
  Cu-oxidase_3  96 YhshlslqqaaGlaGaiiiedk 117
                   Yh+h++ q+a+G++G ++++++
    CCE27768.1 167 YHAHSAVQRADGMYGGLVVHKP 188
                   *******************986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
                   EETT-EEEEEEEE-S.SS-B-EEEET--S-GG..... CS
  Cu-oxidase_3  31 vregdtvvvnvtNkl.dentsihwhGlqqrktswmDG 66 
                   +++g +v+++++N   + + s+ + G  ++   + DG
    CCE27768.1 271 AHRG-RVRLRIVNTGaSAGYSLQLAGAAMKLV-TVDG 305
                   4444.688888888767788888888877766.6666 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.38
                   -EEEEETT-EEEEEEEE-SSS-B-EEEET-- CS
  Cu-oxidase_3  27 ptievregdtvvvnvtNkldentsihwhGlq 57 
                   p++e+ e + + + v N  d++   h+hG +
    CCE27768.1 469 PQFEAGEERWMDLVVNNVDDRGHPFHLHGYE 499
                   666666666666655555599999****975 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.038
                   -B-TT-EEEEEEE--S-SEEEEEEE--TTHHHTT-EEEEEE CS
  Cu-oxidase_3  74 piqpgesftyrftvkqqagtlwYhshlslqqaaGlaGaiii 114
                    i+p    + r++++   g  + h h+ ++qaaG+ +++ +
    CCE27768.1 538 YIKPRGYIVLRLRLDA-PGLWLMHCHVLWHQAAGMGTVLQV 577
                   5777778888888888.888888999999999998777766 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   1.4     0.002        12      56     134 ..     120     186 ..      61     189 .. 0.72
   2 ?    0.9   0.0     0.057   3.4e+02      31     102 ..     264     340 ..     234     347 .. 0.73
   3 !  101.5   0.1     5e-33     3e-29      19     134 ..     450     578 ..     435     581 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.002
                   EEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES...S-EEEEEEESSHHHHHTT-EEEEEEE CS
  Cu-oxidase_2  56 PfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkad..npGvwllHCHilwHldqGmalqfvvr 134
                    +H+HG +++  ++  g               v     +v pg ++++ f+ d  + G + +H H +     Gm++ +vv 
    CCE27768.1 120 AIHWHGITMKGFNEMDGA--------------VGITQCAVGPGRTFIYKFQIDqqQHGTFWYHAHSAVQRADGMYGGLVVH 186
                   566666655555444444..............333456899999999999987558899****************999986 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.057
                   SSEEEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECC...CCCCTCCSSGCCGSSCB.SEEEE-TTEEEE CS
  Cu-oxidase_2  31 ntnvitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgn...dpeedpksynlenpvrr.dtvqvppggwva 102
                   ++ +++  ++ +v++ i n++     ++ l G  ++++  ++g    ++++ ++++ +  p++r d+v +p+g+++a
    CCE27768.1 264 TETPVVHAHRGRVRLRIVNTGASaGYSLQLAGAAMKLVTVDGGGfvsKRTPWTSTIGVLYPGERmDVVLLPSGEQTA 340
                   44555566677888888888877666888889999999888888777666666777777777666999999887765 PP

  == domain 3  score: 101.5 bits;  conditional E-value: 5e-33
                   EEEEEETCCTTTSSEEEEEET.....TEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECC........CCCCTCCSSGCCGSSCBSEEEE-TTEEEE CS
  Cu-oxidase_2  19 aseitngeefsentnvitlpk.....gevveiviqnntklpHPfHlHGhdfqvlgrgpgn........dpeedpksynlenpvrrdtvqvppggwva 102
                   a+ ++ng+e  +   ++++p+       ++++v++n ++  HPfHlHG++f+vl++ +++        d+   +  +n+ np r+dtv ++p g+++
    CCE27768.1 450 ATAWQNGTEQANPFRAFKVPQfeageERWMDLVVNNVDDRGHPFHLHGYEFYVLASRQDElgraynpfDNHGAEIPVNVRNPLRKDTVYIKPRGYIV 546
                   344455555555666666666666669***************************8877778899998988888999999****************** PP

                   EEEES.S-EEEEEEESSHHHHHTT-EEEEEEE CS
  Cu-oxidase_2 103 irfkadnpGvwllHCHilwHldqGmalqfvvr 134
                   +r + d pG wl+HCH+lwH+ +Gm +++ v 
    CCE27768.1 547 LRLRLDAPGLWLMHCHVLWHQAAGMGTVLQVG 578
                   **************************999886 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.04   2.4e+02     111     140 ..     144     172 ..      72     186 .. 0.65
   2 !   60.3   0.0   3.9e-20   2.3e-16       4     125 ..     207     335 ..     204     342 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.04
                 EE-TTEEEEEEEEE-S.SSEEEEEEEEGSSS CS
  Cu-oxidase 111 dIavGqrysvlvtanq.apgnYwivasgrsn 140
                  +++G ++   ++ +q + g++w++a+  s+
  CCE27768.1 144 AVGPGRTFIYKFQIDQqQHGTFWYHAH--SA 172
                 4555555444444444359******93..22 PP

  == domain 2  score: 60.3 bits;  conditional E-value: 3.9e-20
                 EEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......C...TTTTSGGGEEEEET..TEEEEEEEESSS-BEEEEETSB-EEEEEE CS
  Cu-oxidase   4 vitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladk...dgaslatltvepgk..tyrlriinvsaddslnfsIeGHkltVvev 97 
                 +++++Dwyh++a+ + +e+ + +    + +pvpd++ling g +n+++a     ++++++++ v +    ++rlri+n++a   ++++++G  +++v v
  CCE27768.1 207 LLLIGDWYHRSADRVLAEYKDFR--SFANEPVPDSLLINGAGSYNCSNARPgkpVDCMNTETPVVHAHrgRVRLRIVNTGASAGYSLQLAGAAMKLVTV 303
                 6889**********988444432..344499****************998456777777777776554227999************************* PP

                 TCE.TTS...EEEESCEEE-TTEEEEEEEEE- CS
  Cu-oxidase  98 Dgv.yve...pvevdsldIavGqrysvlvtan 125
                 Dg  +v    p + +   +++G+r++v++ ++
  CCE27768.1 304 DGGgFVSkrtPWTSTIGVLYPGERMDVVLLPS 335
                 9862554777877777899********99774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4464.37
//
Query:       CCE27769.1  [L=669]
Description: related to non-hemolytic phospholipase C precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-86  290.7   1.4    2.3e-86  290.2   1.4    1.1  1  Phosphoesterase  Phosphoesterase family


Domain annotation for each model (and alignments):
>> Phosphoesterase  Phosphoesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.2   1.4   1.3e-90   2.3e-86       1     351 [.      24     397 ..      24     400 .. 0.89

  Alignments for each domain:
  == domain 1  score: 290.2 bits;  conditional E-value: 1.3e-90
  Phosphoesterase   1 ikhvViivqENrsfdhlfGtlkgvrgiddasplaqqdG..vkkqa....lnkaevsapfsldtakg..lsaqvvvedpehsfqaiqeqwnggrn 86 
                      ikh+++ +qENrsfdh+fGt+ gvr+++d+  ++ +dG  v+ q     +n  ++  p++++   g  ++a  +       + a++ ++n++r 
       CCE27769.1  24 IKHIILFMQENRSFDHYFGTMAGVRNFGDPN-VHVNDGvpVWRQRtsktNNGVSTLSPWHINYLGGdwKEATQCMAAGSNDWIAMHGAYNNSRG 116
                      89************************99665.5666798878877443455555699*********9999999999****************** PP

  Phosphoesterase  87 dkfvaaaeselvmgyfkredipvlwelaqeftlcDryFssvlggtepNrlflisgts.......dpsGt.......eggpsladp....kktvl 162
                      d+++ + +   +mgy++redip +w++a+++t++D+ ++svlg t+pNr++++sgt+       +p+G+             a+p      ++ 
       CCE27769.1 117 DGWAVYDTD-YSMGYYRREDIPTHWDIADGWTIMDNSHQSVLGVTDPNRVMWMSGTVnsagsptNPDGKggnilsnR-----ASPgcdsPGNNC 204
                      *****9999.***********************************************55555554444455444432.....333554488899 PP

  Phosphoesterase 163 kgftqktigerLsekgvswaiYqealdnlakskvapfnyyvrklkklearrkalkqlglaakqlekfkkdvkngkLPqvsfikpngandeHpga 256
                       +f +kt++e L+++gvsw+++q+  dn+ ++ +a+f++y ++ ++++ r++ ++  gl     ++f +++ ng+LPqvs+i+ + +++eHp +
       CCE27769.1 205 FPFVWKTMPEILQDAGVSWRVWQDF-DNYEDNMLAYFKQYQDAKNGSALREQGISFPGL-----QAFYDACANGSLPQVSWIVGPQEQSEHPPN 292
                      9*********************985.6******************99977777777777.....89**************************** PP

  Phosphoesterase 257 dvaagdklikevlealtsspqwaktllivtyDEngGfyDhVappvapvsdpdgl........kGd..pyglgvrvPllviSpyakkgtvdhelf 340
                       + +g++l k++++a+ +sp  ++t+li++yDE+gG+ DhV+ppvap   ++++        +G+  p+g+g+rvP +++Sp++++g v  e+ 
       CCE27769.1 293 MPIDGAWLHKNIVDAVVRSPVYNETALIISYDEQGGWADHVIPPVAPPDAAGEWipdpfkpsDGQklPIGPGPRVPRFIVSPWTRGGHVFTETG 386
                      ***********************************************8888888888888775558899************************* PP

  Phosphoesterase 341 dhtSvlrfiek 351
                      dhtS l f+e+
       CCE27769.1 387 DHTSDLLFVEA 397
                      ********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4561.86
//
Query:       CCE27770.1  [L=340]
Description: uncharacterized protein CPUR_01244 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-05   22.2   1.3        0.2   11.2   0.0    2.3  2  Glyco_transf_8  Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   1.1e-05       0.2      92     132 ..     130     170 ..      56     206 .. 0.85
   2 !   10.2   0.3   2.2e-05      0.39     229     253 ..     275     299 ..     235     302 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.1e-05
  Glyco_transf_8  92 lRlylpelfpkldkilylDaDvvvqgdlseLwdldlkgkvl 132
                       + l e+ p +++ l lDaD ++ ++l++L+d+  + +++
      CCE27770.1 130 SAFKLHEYDPTIQRALVLDADQLILQNLDDLFDIRPAVQFM 170
                     456777888*************************9984443 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 2.2e-05
  Glyco_transf_8 229 skkskkeitenaaviHyiGpaKPWl 253
                     ++ +++   ++aa++H++   KPW+
      CCE27770.1 275 TSLEMHALHNQAAIVHFTAVGKPWS 299
                     5567888899**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2596.83
//
Query:       CCE27771.1  [L=943]
Description: related to PET127 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.8e-117  389.8   1.4   6.8e-117  389.8   1.3    1.9  2  Pet127        Mitochondrial protein Pet127


Domain annotation for each model (and alignments):
>> Pet127  Mitochondrial protein Pet127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1      0.42   7.6e+03      97     128 ..     110     141 ..     101     150 .. 0.70
   2 !  389.8   1.3  3.8e-121  6.8e-117       1     274 []     280     551 ..     280     551 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.42
      Pet127  97 lGkslEklLtleeeefekylkkeksekakeee 128
                 l + +E+ L+ e+++ ++y+ ++ +e++ ++e
  CCE27771.1 110 LRERIEASLAAENTRKKNYEAENAEEDEVDPE 141
                 55678899999999999998888666544333 PP

  == domain 2  score: 389.8 bits;  conditional E-value: 3.8e-121
      Pet127   1 fvtsskdkeLlelakeekkkyvsStSsltsvLsqlylllsnfrklnlsslskafeekskkftklarlpasvilrkkekvyaidsdksldkeiiLsalGk 99 
                 ++tsskd +L +l+ +++ ky++StSs+ts+Ls+l++l+s +rk n+++ls++++ +s++ft+l+r p++++ + k++vyaid+dk++dke++Ls+lG+
  CCE27771.1 280 YTTSSKDARLRKLCAKHELKYCGSTSSMTSILSHLHFLISAWRKPNFDNLSRSLNPDSQNFTSLSRGPVAAFAHFKDGVYAIDADKQYDKENVLSMLGQ 378
                 89************************************************************************************************* PP

      Pet127 100 slEklLtleeeefekylkkeksekakeeekkeaYnysklgkfllrsqLDcydprlpgtgvFdlKtRavvaiRydleeveketgyeikklkgefeSferE 198
                 s+EklLt ++eefe y+++++++ a+ee+++e+++y++lg+f++rsqLD++dprlpg+g+FdlKtRavv+iR+d++e+ek+ gyei++++g++eSferE
  CCE27771.1 379 SMEKLLTVPKEEFEMYRRSRSHQLADEEKAAETHHYTTLGDFMMRSQLDAHDPRLPGSGIFDLKTRAVVTIRMDVTEYEKGVGYEIRQRFGQWESFERE 477
                 *******************977777777777******************************************************************** PP

      Pet127 199 yydlirsalLKYslQariGqmdGifvaYHnikrifGfqYlpleeldkvlfgeeelaskladkeFklslelleklld 274
                 y d+ir+a+LKYslQ+r+G+mdGifvaYHn++rifGfqY++l+e+d++++g+++  ++l+d eF +s+++l++lld
  CCE27771.1 478 YCDMIRAAFLKYSLQVRMGRMDGIFVAYHNTQRIFGFQYISLAEMDQAIHGTND--TRLGDLEFMCSVKMLNDLLD 551
                 ***************************************************777..56****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (943 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1698  (0.0947069); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.14u 0.36s 00:00:01.50 Elapsed: 00:00:00.51
# Mc/sec: 5540.14
//
Query:       CCE27772.1  [L=879]
Description: uncharacterized protein CPUR_01246 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.6e-286  950.3   0.0   9.7e-286  950.1   0.0    1.0  1  Hid1      High-temperature-induced dauer-formation protein
    2.5e-94  316.9   0.0    3.1e-94  316.6   0.0    1.0  1  Dymeclin  Dyggve-Melchior-Clausen syndrome protein


Domain annotation for each model (and alignments):
>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  950.1   0.0  1.1e-289  9.7e-286       1     812 []       1     825 [.       1     825 [. 0.96

  Alignments for each domain:
  == domain 1  score: 950.1 bits;  conditional E-value: 1.1e-289
        Hid1   1 MgasesklafkkaifrLgekrliaeddayweefWelpesteDvFeLltpadirkvRdenleNletLilavierlvelakhpsfpdpeqapeseaLnCvR 99 
                 Mgas+sk++fk++if+L+e+r+i  dd+yw++fWelpes+eDvF+L++p+dir++Rd++leNletLila+++rl  l++hpsfpdpe ape++aLnC+R
  CCE27772.1   1 MGASDSKIVFKQGIFKLSEERHIRPDDPYWTSFWELPESSEDVFSLFSPTDIRRTRDQALENLETLILALTSRLFLLRHHPSFPDPELAPERDALNCIR 99 
                 *************************************************************************************************** PP

        Hid1 100 lLtrllPfifEeesleewedklfWssrkkpkrkaqvasevledesssee......eeeeekekplaeelldalvdlLFlkdFTvpapksskskveysiW 192
                 +LtrllP+++E+esl+ we+++fW  r+k++r+a +a+evl+de++s++      ++e+e++kplaeel+d+l+dlLF++++T++ +++ ++kv+++iW
  CCE27772.1 100 VLTRLLPYLYEKESLAAWEQRFFWGARRKRTRRAVIANEVLFDEAESDRqerktnTDEYEEAKPLAEELIDTLIDLLFFSNLTITSQPQGHDKVTFAIW 198
                 *********************************************9988899999999***************************************** PP

        Hid1 193 esGvgtatklpsnkeiesnRtEvLklLLtlfsetlYrspsevssngskvltylvssdnrqevltLlcSLlntvcrydpsgsglpynsvvlkdsrellVe 291
                 +sGvg++t+++++ke+esnR+EvL+lL+ l+++++Y++p  + ++g+++ltyl+++ ++q+vl++lcSLlnt+++y+p+ +++pyns+v+ ds+ellV+
  CCE27772.1 199 QSGVGCNTAVATTKEFESNRAEVLRLLMALAGQSMYSTPGVLTQTGVRTLTYLCACPDKQIVLSVLCSLLNTTLKYNPATWRVPYNSLVFRDSKELLVT 297
                 *****************************************99******************************************************** PP

        Hid1 292 yclqlLlvlldypipedeklseevktertsskpkNlfriylgrlhreqdfqFlldgltriLnqplq..ssylpnsqksvkfaqelliLlwellqcNkrF 388
                  +lq+Ll+ll+ypipe+ ++          +  kN++r++lgrlhr+qdfqF++dg++riL+qpl+  +sylp+ +   +fa+e+l+L+we++qcNkrF
  CCE27772.1 298 HSLQFLLALLVYPIPESISQ--------PLTSSKNFYRHFLGRLHRPQDFQFIVDGMSRILSQPLSekTSYLPGAHAATNFAPEILMLFWEMTQCNKRF 388
                 ****************9888........226789*********************************99****************************** PP

        Hid1 389 rsfviessrvldllvlilyylveyrsdqskkglvkicvfillllSseknfgkrLnkpfeaqeslptsiripvftgtyaDfliisihkllttgkeklssl 487
                 rsf+i+++rv+d++vl ++y++ey+sd++k+g+v++c+f+l++lS++ +fg +Lnk fe+q+slp +iri+ f+gty Dfli si++l+t ++++  ++
  CCE27772.1 389 RSFIIDTDRVHDFVVLTIFYALEYKSDAAKQGIVRMCAFLLQTLSVDVKFGPSLNKVFEGQDSLPAGIRITGFKGTYCDFLIHSIYNLITRSQGSFAAI 487
                 *************************************************************************************************** PP

        Hid1 488 vdtLleiLvnispylktLsleacskllqLlesfSspsfLlanesNhkllalllealnnviqkqfkgnrnLvYsilrkrkvfealrnltlesaseeiers 586
                 +++Ll++++ni+p +++L  + +s+l++L++s+SspsfLlane+N +ll++l+e++ ++i  ++ +n+ L+ +i+++rk++ealr++tles++eeier+
  CCE27772.1 488 YPALLAVINNIAPHIGNLGASGSSQLMHLFSSMSSPSFLLANETNYQLLHSLMESISAIIDNRYRQNPHLLLAIVKNRKRIEALRSFTLESGKEEIERR 586
                 *************************************************************************************************** PP

        Hid1 587 ne..sarldsideeeeenssessrieesrsesrspslsevpelksslaitddeskaereksatessssqavs.................qlremsekar 666
                 ++  + r d  d  + ++s +s+r++++ +  + psl +vpe + ++ai+ ++++++++ + t ++s+++++                 qlr+msekar
  CCE27772.1 587 TRlrKDRGDLHDAGSGRSSVDSTRSQHAAATTKAPSLGDVPE-DGAFAIGGSDDDSDEDSQPTAAQSTASATqsqsstgananddavpiQLRGMSEKAR 684
                 *97666666677778888999999999999999********7.889999877777776666666665554446799*********************** PP

        Hid1 667 akesaesteesrqesatskkspsgmsqsaeekftptsewlesWksklpLetiltllkallpkiekiaseegltdeseiLkflkdktlvgllpepspiki 765
                 +k++ + +++srq+s+ts   +s  s+ ++++f p+s+w++sW ++lpL+ ilt+++++   +++++s+e   ++  ++   ++ +lvg+  epsp ++
  CCE27772.1 685 GKMPIGAQSFSRQNSTTSLGDQSSSSHMQSGSFEPSSQWIDSWLPELPLHSILTVIQQMASILPRQSSREASVPD--LIRRIQEINLVGI--EPSPARV 779
                 *********************************************************************988888..7899999999999..9****** PP

        Hid1 766 rkfewsalslgWyesllwgviynreenvkkltavgvwndtevkLfki 812
                 ++fews+l+lgWyesllwgvi+++e++++k +++g+w++t++kLf++
  CCE27772.1 780 HSFEWSPLALGWYESLLWGVIFSNEMHMAK-GTMGLWTGTSIKLFRV 825
                 **************************8887.**************97 PP

>> Dymeclin  Dyggve-Melchior-Clausen syndrome protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.6   0.0   3.5e-98   3.1e-94       1     604 [.       1     777 [.       1     797 [. 0.92

  Alignments for each domain:
  == domain 1  score: 316.6 bits;  conditional E-value: 3.5e-98
    Dymeclin   1 MGassSklafrkavlqllsktqpidaddafWdqllsfslktptsvqdvfalvepaaeilalrnespgnLatLlrkaveklvelke....scssakeqqt 95 
                 MGas+Sk  f k+ + +ls++++i++dd++W ++++     p s++dvf l  + ++i+  r+++ +nL+tL+  ++++l  l++    + +    +  
  CCE27772.1   1 MGASDSKIVF-KQGIFKLSEERHIRPDDPYWTSFWE----LPESSEDVFSL-FSPTDIRRTRDQALENLETLILALTSRLFLLRHhpsfPDPELAPE-- 91 
                 *********9.66699999999*************6....8889*******.8899*****************************775533333332.. PP

    Dymeclin  96 alsqalNalrllrrilkyllerasee....................................eedeeeseeaeplaeslllalvdllfcpdftvpsk.. 156
                   + alN++r+l+r+l+yl e++s +                                    ++++ e eea+plae+l+++l+dllf++++t++s+  
  CCE27772.1  92 --RDALNCIRVLTRLLPYLYEKESLAaweqrffwgarrkrtrravianevlfdeaesdrqerKTNTDEYEEAKPLAEELIDTLIDLLFFSNLTITSQpq 188
                 ..45***************555555555555555555555666667777777777777777777788899999***********************445 PP

    Dymeclin 157 ......................sdstyalrtellklLlvllseqlysppssadssafnklldgktsaenrialplvtsLLntviaydpvdesdagsgvp 233
                                       +++++++r e+l+lL++l+ +++ys+p   +++ +++l+      +++i+l++++sLLnt ++y+p+     +++vp
  CCE27772.1 189 ghdkvtfaiwqsgvgcntavatTKEFESNRAEVLRLLMALAGQSMYSTPGVLTQTGVRTLTYLCACPDKQIVLSVLCSLLNTTLKYNPA-----TWRVP 282
                 77899*****************899****************************99777777766669**********************.....***** PP

    Dymeclin 234 ynhllfsdaaasleplveqslqlLlvlldhdktekavaeesestaeesNlfrnyLsrihreeesdadfkfilkglfrllnntvpseqtylpns..kiqf 330
                 yn+l+f+d+    e lv +slq+Ll+ll ++ +e+ ++      ++++N +r++L r+hr++    df+fi++g+ r+l++ ++ +++ylp++    +f
  CCE27772.1 283 YNSLVFRDSK---ELLVTHSLQFLLALLVYPIPESISQ----PLTSSKNFYRHFLGRLHRPQ----DFQFIVDGMSRILSQPLSEKTSYLPGAhaATNF 370
                 **********...*****************99999876....445566**************....**************************9999*** PP

    Dymeclin 331 hqelllllykLlhsNkkfleyvlkrsdvldllvPiLellydaradqsrvgliyillfiLLlLSgdrnfgvrlnkliiksvpy..servpmdis..vftg 425
                 + e+l+l++ + + Nk+f+++++ ++ v d++v  +++  + ++d ++ g + ++ f+L  LS d +fg +lnk+      +  ++ +p  i    f+g
  CCE27772.1 371 APEILMLFWEMTQCNKRFRSFIIDTDRVHDFVVLTIFYALEYKSDAAKQGIVRMCAFLLQTLSVDVKFGPSLNKV------FegQDSLPAGIRitGFKG 463
                 *******************************999999999999999999**************************......86677788777644789* PP

    Dymeclin 426 tlgdLlilvlhrlitynhqrlqDkpLhtcllaiLaNvSpylknLsmvasqkLvsLlellskkwfllsaeakasddlaqelsvneelvrllleilnsiLq 524
                 t+ d+li  ++ lit+    +    ++  lla++ N++p++ nL    s  L++L+  +s++ fll++e+            n++l+  l+e ++ i+ 
  CCE27772.1 464 TYCDFLIHSIYNLITRSQGSFA--AIYPALLAVINNIAPHIGNLGASGSSQLMHLFSSMSSPSFLLANET------------NYQLLHSLMESISAIID 548
                 **********************..**********************************************............***************** PP

    Dymeclin 525 yqldgNsnLVYallrkrevfaalanlptdfad................................................................... 556
                 + +++N++L  a++++r+ ++al++ + +  +                                                                   
  CCE27772.1 549 NRYRQNPHLLLAIVKNRKRIEALRSFTLESGKeeierrtrlrkdrgdlhdagsgrssvdstrsqhaaattkapslgdvpedgafaiggsdddsdedsqp 647
                 ************************9988666699***************************************************************** PP

    Dymeclin 557 ....................................................................................plqnimrvlqvlvpq 571
                                                                                                     pl +i++v+q +++ 
  CCE27772.1 648 taaqstasatqsqsstgananddavpiqlrgmsekargkmpigaqsfsrqnsttslgdqsssshmqsgsfepssqwidswlpelPLHSILTVIQQMASI 746
                 ************************************************************************************************999 PP

    Dymeclin 572 vekicadkgsldeseilkviqkgtlvgllpvph 604
                 +  +     + ++   ++ iq+  lvg+ p+p 
  CCE27772.1 747 LPRQSSR--EASVPDLIRRIQEINLVGIEPSPA 777
                 9994444..589999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (879 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 5950.11
//
Query:       CCE27773.1  [L=537]
Description: related to epoxide hydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-21   77.2   0.1      2e-21   76.3   0.1    1.4  1  EHN       Epoxide hydrolase N terminus


Domain annotation for each model (and alignments):
>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.1   1.1e-25     2e-21       2     105 ..      17     126 ..      16     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 1.1e-25
         EHN   2 rpfkisvpqeelddlkkrleltrlpeeeaeeee..eweeGvtkdelkelldyWkeeydWraeearln.sfpqfkteidg......ldihFihlrsakpd 91 
                 + ++i++++++l+ ++++l+ltrlp++  ++++  +w    +k+++++l+dyW ++++Wr++ea ln ++pqf+te+ +      +++h ih rs+ ++
  CCE27773.1  17 KLYTIHISSKYLNLTRQKLQLTRLPRNGPQPHRteSW---EPKATVERLVDYWLQNFSWRDQEADLNaNVPQFRTEMRTssteapVRLHLIHSRSTYAN 112
                 5689********************9877777655445...59*************************99*******953345667**********99** PP

         EHN  92 aiPllllhGWPgsf 105
                 a+P ll++++P + 
  CCE27773.1 113 AVPCLLIPPFPFTN 126
                 ***********886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3660.75
//
Query:       CCE27774.1  [L=1104]
Description: related to secretion protein rsec8 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-47  159.8   2.8    1.3e-46  158.1   0.6    2.7  3  Sec8_exocyst  Sec8 exocyst complex component specific domain
    4.7e-11   42.5   1.9    9.9e-11   41.5   1.9    1.5  1  Vps54_N       Vacuolar-sorting protein 54, of GARP complex
  ------ inclusion threshold ------
      0.017   15.1   0.1      0.042   13.9   0.1    1.6  1  YcbB          YcbB domain
       0.42    9.8   2.4          3    7.0   0.3    2.3  2  IF-2B         Initiation factor 2 subunit family
        0.5   10.5   2.5       0.64   10.1   0.3    2.4  2  Swi5          Swi5
          2    8.7   5.6         17    5.7   0.4    3.0  3  DUF5082       Domain of unknown function (DUF5082)
        2.6    8.2   4.4         30    4.8   0.0    3.6  3  Vps51         Vps51/Vps67
          4    6.9   6.9        1.4    8.4   1.0    3.0  4  4HB_MCP_1     Four helix bundle sensory module for signal tra
        8.7    6.1   6.8       0.89    9.4   0.8    2.3  2  Phage_GP20    Phage minor structural protein GP20
        8.8    6.3   9.0         27    4.7   0.8    4.3  4  Prefoldin     Prefoldin subunit


Domain annotation for each model (and alignments):
>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.1   0.6   7.1e-50   1.3e-46       2     141 ..      76     215 ..      75     216 .. 0.98
   2 ?   -3.9   0.0       6.3   1.1e+04      76      95 ..     341     360 ..     332     364 .. 0.68
   3 ?    0.2   0.0      0.34   6.1e+02      66     105 ..     730     769 ..     699     793 .. 0.59

  Alignments for each domain:
  == domain 1  score: 158.1 bits;  conditional E-value: 7.1e-50
  Sec8_exocyst   2 LkevlnkikeeWpavlsddanpvelalsllDdssvGlahrlkefkqlkkqieeaLqevvnehhqaFnssiasYskilssiqesqekvselKesleea 98 
                   + +vl++i+ +Wp + ++++ pv+lal+llD+ssvG+ah++++f+++++ ++++L+++v+ehhq+Fnssi++++ki+ siq sq++v+elKesl+ +
    CCE27774.1  76 ITQVLEHIRADWPSMCENESLPVQLALQLLDTSSVGRAHEYRKFQDTHRYLQDSLKNIVHEHHQGFNSSIGTFHKIQGSIQASQKRVRELKESLAGS 172
                   7899********************************************************************************************* PP

  Sec8_exocyst  99 kkklstkkkeLkelnarsakykevieiLdaieelkkvpdkieq 141
                   k++l+ +++ Lk+l+++s+ y+e++++L++++el++vpd++e+
    CCE27774.1 173 KASLCSTDPGLKKLSKTSQDYEELLQTLNELDELRAVPDQLEA 215
                   *****************************************96 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6.3
  Sec8_exocyst  76 kilssiqesqekvselKesl 95 
                   ++l+++   q+ v++lK++l
    CCE27774.1 341 EALNKLGRLQNAVENLKQRL 360
                   45566666677777777765 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.34
  Sec8_exocyst  66 aFnssiasYskilssiqesqekvselKesleeakkklstk 105
                    F+   +  +++++++ +++e+v ++   l    ++l ++
    CCE27774.1 730 RFSIQLGPLEEVVQQLWKAEEDVDDVTALLDREIQELVEQ 769
                   4555556666666777777777766666666555555322 PP

>> Vps54_N  Vacuolar-sorting protein 54, of GARP complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   1.9   5.5e-14   9.9e-11      36     159 ..     115     238 ..      92     274 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 5.5e-14
     Vps54_N  36 evkklksqhdvvskklsqlilekreefvkelseveeiekelkesvvickngrraLdlakkeltrtsLellakskkrqllkkllktltaikelrelekrl 134
                 e  k++  h+++++ l++ + e+++ f++ ++  ++i+  ++ s + +++ ++ L+++k  l  t+ +l   sk  q   +ll+tl+++ elr +  +l
  CCE27774.1 115 EYRKFQDTHRYLQDSLKNIVHEHHQGFNSSIGTFHKIQGSIQASQKRVRELKESLAGSKASLCSTDPGLKKLSKTSQDYEELLQTLNELDELRAVPDQL 213
                 56789999******************************************************************************************* PP

     Vps54_N 135 eelleeedysaAiqllletkqlaek 159
                 e  ++e+ + aA+++l +  +++ +
  CCE27774.1 214 EARISEKRFLAAVEVLQNALRKLRR 238
                 ****************999887764 PP

>> YcbB  YcbB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.3e-05     0.042      39     134 ..     127     225 ..     107     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
        YcbB  39 lpslkeiyeelaekk...easeeeiekevkaieqRiRRaikkalknlAslGledysnpkfeeYasklFdfkevrkkmkelekksesskgkinvkkFieg 134
                 + slk+i +e  +       + ++i+  ++a+++R+R   ++   + Asl+ +d   +k  + ++ + +  +  ++++el+   ++ +++i+ k+F+ +
  CCE27774.1 127 QDSLKNIVHEHHQGFnssIGTFHKIQGSIQASQKRVRELKESLAGSKASLCSTDPGLKKLSKTSQDYEELLQTLNELDELRAVPDQLEARISEKRFLAA 225
                 667888877777766544456889999*********87766666799*******9999999999999999999999999999888888********976 PP

>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.05        89      10      55 ..     145     189 ..     141     257 .. 0.78
   2 ?    7.0   0.3    0.0017         3      42     141 ..     725     817 ..     707     827 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.05
                 HHHHHHHHHHHHHCCCSTHHHHHHHHHHHHHHHHTSSTS-HHHHHH CS
       IF-2B  10 iaalevllevikdaktskvaeLkeelrkaidlLkkarPtavslgna 55 
                 i + + ++  i++++ ++v+eLke+l  + ++L++++P   +l+  
  CCE27774.1 145 IGTFHKIQGSIQASQ-KRVRELKESLAGSKASLCSTDPGLKKLSKT 189
                 556667777888888.99********************77666655 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0017
                 HHTSSTS-HHHHHHHHHHHHHHHCCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEEE CS
       IF-2B  42 LkkarPtavslgnairrllkeiselksssdvkeakksliekikelikeieeadekigdiaaelikdgdtilTicnsktvlevlraaakekkkfkVivvE 140
                 L++a   +++lg   + + +     k ++dv+++ + l ++i+el+++  e++      a + i+d dtil  c   t ++ l a ++  ++++V  ++
  CCE27774.1 725 LRAAARFSIQLGPLEEVVQQ---LWKAEEDVDDVTALLDREIQELVEQTNESRL----EANDVIQDRDTILSLCLLYTSMKWLAAKISGLRHITVHETD 816
                 55555555666554444444...5678888899999999999988888777765....57899************************999999999888 PP

                 X CS
       IF-2B 141 s 141
                 s
  CCE27774.1 817 S 817
                 7 PP

>> Swi5  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00036      0.64       4      73 ..     154     230 ..     151     232 .. 0.71
   2 ?   -2.5   0.1       3.1   5.5e+03       3      13 ..     761     771 ..     738     783 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSHCGGGHH CS
        Swi5   4 eikeleeqleelekelaelkeelkekk.......dpeetvkrhIklLheYNEiKDvgqgLigliAeargvrikevfe 73 
                 +i++ +++++el+++la  k+ l +++       + ++  ++ ++ L+e  E++ v  +L  +i e+r +  +ev++
  CCE27774.1 154 SIQASQKRVRELKESLAGSKASLCSTDpglkklsKTSQDYEELLQTLNELDELRAVPDQLEARISEKRFLAAVEVLQ 230
                 67777777777777777777777777677773335555555556666666678999999999999999999999986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.1
                 HHHHHHHHHHH CS
        Swi5   3 aeikeleeqle 13 
                 +ei+el eq++
  CCE27774.1 761 REIQELVEQTN 771
                 22333333332 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.024        44      50      93 ..     120     169 ..     106     172 .. 0.83
   2 ?   -3.5   0.0       6.6   1.2e+04     105     122 ..     340     357 ..     334     358 .. 0.77
   3 ?    5.7   0.4    0.0093        17      67     107 ..     733     773 ..     710     779 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.024
     DUF5082  50 lekplnssesWkGkeennydgirs......nlessyqtyvdkldelidai 93 
                 + +    ++s+k+   + ++g+ s      +++ s+q+++++++el+ ++
  CCE27774.1 120 QDTHRYLQDSLKNIVHEHHQGFNSsigtfhKIQGSIQASQKRVRELKESL 169
                 555556677999999999999999999999****************9887 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.6
     DUF5082 105 seaqgvldtlqsqlnslk 122
                  ea ++l++lq+++++lk
  CCE27774.1 340 VEALNKLGRLQNAVENLK 357
                 567788888888888887 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0093
     DUF5082  67 nydgirsnlessyqtyvdkldelidaieeEIerLenqisea 107
                    g ++++ ++  + ++++d++ + +++EI++L +q +e+
  CCE27774.1 733 IQLGPLEEVVQQLWKAEEDVDDVTALLDREIQELVEQTNES 773
                 44555667888888899999999999999999999999875 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.017        30      30      81 ..     118     169 ..      97     173 .. 0.88
   2 ?    2.1   0.1      0.11     2e+02      49      76 ..     192     219 ..     189     221 .. 0.89
   3 ?   -0.7   0.3      0.86   1.5e+03      22      51 ..     743     772 ..     738     784 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.017
       Vps51  30 sllseiraldselkalVydnYskLisasdtIrkmksemdkldqklselkqai 81 
                 + +   r l+ +lk++V ++++ + s   t +k++++++  ++++ elk+++
  CCE27774.1 118 KFQDTHRYLQDSLKNIVHEHHQGFNSSIGTFHKIQGSIQASQKRVRELKESL 169
                 556667889***************************************9876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.11
       Vps51  49 nYskLisasdtIrkmksemdkldqklse 76 
                  Y++L+++ +++ +++   d+l++++se
  CCE27774.1 192 DYEELLQTLNELDELRAVPDQLEARISE 219
                 6999***********9999999999886 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.86
       Vps51  22 kellkveasllseiraldselkalVydnYs 51 
                 ++l k e+++      ld+e+++lV +  +
  CCE27774.1 743 QQLWKAEEDVDDVTALLDREIQELVEQTNE 772
                 566666666666666777777777766555 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.1     2e+03      39     119 ..      89     170 ..      80     175 .. 0.67
   2 ?    8.4   1.0   0.00077       1.4      96     175 ..     181     260 ..     154     264 .. 0.84
   3 ?   -3.2   0.0       2.9   5.2e+03     109     127 ..     447     465 ..     444     472 .. 0.80
   4 ?   -0.3   0.1      0.37   6.6e+02     142     178 ..     689     725 ..     684     728 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.1
   4HB_MCP_1  39 tmYedrllpikdlgeikanlrelradlleliltkdkaekdellkdi.eeleaeidkllekyektiltee.Ekelleefkeqln 119
                 +m e+  lp++   ++ ++    ra+ ++    + +  +d l k+i  e+ + +++ +  + k+    +  ++++ e+ke+l+
  CCE27774.1  89 SMCENESLPVQLALQLLDTSSVGRAHEYRKFQDTHRYLQDSL-KNIvHEHHQGFNSSIGTFHKIQGSIQaSQKRVRELKESLA 170
                 666666677777777766666677777776666444444444.4554999999999999999987665536777888887776 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00077
   4HB_MCP_1  96 ekyektilteeEkelleefkeqlnaYrevrkkvlelakegkkdeAyqlyetegrparekliealeelvdlnlkvAeeayk 175
                    +k++ t+++ e l +  ++l++ r+v +++ + + e+ +  A +++++ +r+ r+   +++++l dl l +A+++++
  CCE27774.1 181 PGLKKLSKTSQDYEELLQTLNELDELRAVPDQLEARISEKRFLAAVEVLQNALRKLRRPELDSIKALNDLRLYLANQETA 260
                 5568889999999988888899*****************************************************99876 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.9
   4HB_MCP_1 109 elleefkeqlnaYrevrkk 127
                  ll +fke +n Y++++  
  CCE27774.1 447 ALLGSFKELWNLYQNEIRS 465
                 5788999999999988765 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.37
   4HB_MCP_1 142 qlyetegrparekliealeelvdlnlkvAeeaykdnk 178
                 +l  t+++ +++ + e  + lv+  ++++++a ++n 
  CCE27774.1 689 SLIVTQMARYYDRCLEWYKSLVTKTQEQGKDAANNNL 725
                 567789999***********************99985 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.8   0.00049      0.89      17      93 ..     159     237 ..     144     272 .. 0.77
   2 ?   -1.6   0.7       1.2   2.1e+03      40      74 ..     744     779 ..     710     790 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00049
  Phage_GP20  17 kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlkldnaie...laLkeak 93 
                 ++++ e++e     k +l   d  L++L k ++d eeL ++++el +   +  ++ ea i++  + +a+e   +aL + +
  CCE27774.1 159 QKRVRELKESLAGSKASLCSTDPGLKKLSKTSQDYEELLQTLNELDEL-RAVPDQLEARISEKRFLAAVEvlqNALRKLR 237
                 67889999999999*******************************875.5558899999999999888752225555555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
  Phage_GP20  40 qLedLkkkakdnee.Lqkqieelqaknkkakaeyea 74 
                 qL + ++++ d+++ L ++i+el ++ +++  e++ 
  CCE27774.1 744 QLWKAEEDVDDVTAlLDREIQELVEQTNESRLEAND 779
                 333333344444331234555555555444444444 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.81   1.5e+03      18      34 ..     151     167 ..     135     181 .. 0.56
   2 ?    2.2   0.3     0.092   1.7e+02      12      34 ..     183     205 ..     173     227 .. 0.80
   3 ?    0.2   0.0      0.37   6.6e+02      35      56 ..     625     646 ..     606     651 .. 0.75
   4 ?    4.7   0.8     0.015        27      71     110 ..     748     787 ..     747     791 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.81
                 HHHHHHHHHHHHHHHTT CS
   Prefoldin  18 aieelektletlktlkk 34 
                  + +++++ +++++lk+
  CCE27774.1 151 IQGSIQASQKRVRELKE 167
                 44444444444444444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.092
                 HHHHHHHHHHHHHHHHHHHHHTT CS
   Prefoldin  12 laqlkeaieelektletlktlkk 34 
                 l++l+++  ++e++l+tl++l++
  CCE27774.1 183 LKKLSKTSQDYEELLQTLNELDE 205
                 68899999999999999999987 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.37
                 .-TT-EEEEEEETTEEEEEE-- CS
   Prefoldin  35 edegkevlvplgaglyvkaevk 56 
                 +++  e+l++l+++++v+a+  
  CCE27774.1 625 QPQLDETLMKLSDSVFVEADSF 646
                 5667799999******999865 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.015
                 EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  71 veksleeAiellkkkleelekqlekleeeleklkdqittl 110
                 +e ++++ ++ll+++++el +q  +   e+++  +  +t+
  CCE27774.1 748 AEEDVDDVTALLDREIQELVEQTNESRLEANDVIQDRDTI 787
                 699*********************9999999888887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 7382.34
//
Query:       CCE27775.1  [L=523]
Description: probable 1,3-beta-glucan synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-33  115.4   0.0    4.2e-33  114.6   0.0    1.4  1  SMI1_KNR4  SMI1 / KNR4 family (SUKH-1)
  ------ inclusion threshold ------
      0.086   12.2   0.1        0.2   11.1   0.1    1.5  1  DUF908     Domain of Unknown Function (DUF908)


Domain annotation for each model (and alignments):
>> SMI1_KNR4  SMI1 / KNR4 family (SUKH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.0   4.7e-37   4.2e-33       1     132 [.     147     331 ..     147     332 .. 0.92

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 4.7e-37
                 ---HHHHHHHHHHHTS---HHHHHHHHHHTSEEEEETTSEEETTEEEEEE-THHHHS.......................................... CS
   SMI1_KNR4   1 pateedlqefekdlgikLPndyreflkltnGgelfgesnglifglkllsldeieeer........................................ee 59 
                 +at++dl+++e +l+++LP+d+re+l+ ++G+e +g+  g+ifg +l++++ei++e+                                        ++
  CCE27775.1 147 GATPNDLNDLEHQLDCSLPQDVRESLMVHDGQERGGRPTGIIFGSMLMDCEEIAQEWetwrrvnqqylldtttakpttpskafggsneassskqpppRP 245
                 69**************************************************999999999*************************9999999999944 PP

                 ..............HHHCCCHHH.HHHCHHCCSSTTEEEEEEETTCEEEECEEEE..TTTTEEEECC.HHHGG-EEEESSHHHHHH CS
   SMI1_KNR4  60 srsss.........eeladdkek.kkiprqralphgwipfatdgggnyicidlsp..qgeegqvilf.rdddekfqiadsfgdfll 132
                 s+sss         + la++ +  ++  ++ +++ gwip+++d+ggn +++dl+p  +g++gq+ilf rd+d+k+++a s+g fl+
  CCE27775.1 246 SSSSSsagdgewrqSLLARQGSVpPNSVQKAYAHAGWIPLVRDWGGNNLAVDLAPgpNGRWGQIILFgRDYDTKYVVARSWGSFLA 331
                 44444569999987777999999888877777777********************************9999*************96 PP

>> DUF908  Domain of Unknown Function (DUF908)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   2.2e-05       0.2     127     188 ..     194     259 ..     159     281 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.2e-05
      DUF908 127 kedskv..lpsewgdvkvtYYkkssseeqkaesksskeeaseslissspstPtplrrssklgk....t 188
                  + +++  +++ w++v+ +Y   +++++++++sk    +++ s  ss++  P p+  ss+ g+    +
  CCE27775.1 194 MDCEEIaqEWETWRRVNQQYLLDTTTAKPTTPSKAFGGSNEAS--SSKQPPPRPSSSSSSAGDgewrQ 259
                 444444567*****************99999998877776655..33333344444444444344431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 4028.52
//
Query:       CCE27776.1  [L=420]
Description: related to spore coat protein SP96 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-05   24.1   0.0    6.3e-05   23.0   0.0    1.6  1  Glyco_hydro_61  Glycosyl hydrolase family 61
      0.007   17.0   0.0      0.007   17.0   0.0    2.5  2  LPMO_10         Lytic polysaccharide mono-oxygenase, cellulos


Domain annotation for each model (and alignments):
>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     7e-09   6.3e-05     120     175 ..     126     176 ..      45     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 7e-09
                     HCCTTCEEEEE--TTB-SEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEESS-SB CS
  Glyco_hydro_61 120 laengaklsvtiPaslapGeYllRhEiiALhsagskggaQfYpsCaqleVtgsgta 175
                      a++  ++++tiP++la+G+Y      +A    +++g+ ++Y++Ca + Vtgsg +
      CCE27776.1 126 DAADPFTYDFTIPKELASGNYT-----LAWTWFNKVGNREMYMNCAPVSVTGSGGS 176
                     34444799*************6.....68899999*****************8873 PP

>> LPMO_10  Lytic polysaccharide mono-oxygenase, cellulose-degrading
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.8e-07     0.007      87     192 ..      57     166 ..      21     168 .. 0.71
   2 ?   -4.4   5.4         2   1.8e+04      82      82 ..     287     287 ..     218     412 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.8e-07
                 S--...EEEESESEEEEEEEESS-S-EEEEEEEEE-TT--TTS-HHGGGEE......EBEE..EESSCEESCCTCEEEEEEEEETSS--EEEEEEEEEE CS
     LPMO_10  87 wakpvqttytegseiefeveltapHktghfefyitkecfdptkpLtwadle......pfat..vsdpksrapskeatyyrkvklPegrtgehvllqvWq 177
                 +++ v++ y +gs+ ++++  +a H  g  ++ +t++ + ptk   w+ ++      p ++  ++ +++r+  +  ty  ++++P+++     +l+ W+
  CCE27776.1  57 SPNDVSNVYPQGSKQTLKFIGQAVHGGGSCQVSLTTD-LKPTKNSVWKVIKsiqggcPAKNtpGNMGDNRDAADPFTY--DFTIPKELASGNYTLA-WT 151
                 67778999***************************77.7777777888555444654433333233333324444455..*****99877777777.77 PP

                 E.TSTSSSEEEEEEE CS
     LPMO_10 178 yvtanstqeaFynCa 192
                 +  +    e ++nCa
  CCE27776.1 152 WFNKVGNREMYMNCA 166
                 744444589*****9 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 2
                 G CS
     LPMO_10  82 d 82 
                 d
  CCE27776.1 287 D 287
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2899.29
//
Query:       CCE27777.1  [L=167]
Description: related to disease resistance protein aig2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-17   63.4   0.0    4.2e-17   62.9   0.0    1.2  1  GGACT     Gamma-glutamyl cyclotransferase, AIG2-like


Domain annotation for each model (and alignments):
>> GGACT  Gamma-glutamyl cyclotransferase, AIG2-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   2.4e-21   4.2e-17       1     120 [.       7     134 ..       7     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 2.4e-21
                 EEESSTTSTTSCCCHHHHCS.....EC....EEEEEEEECCTBEEEE..ETTTEEEETTSSE.EEE.EEEEE-HHHHHHHHHCT.TTTTSEEEEEEEEE CS
       GGACT   1 vFvYGtLkrgepnhqrlllg.....ar....flesgpatlkgyrlyd.lggkypalvpgdgekVkG.elyevddeelarLDelEpeepseYereevkve 88 
                 +FvYGtL+   ++++ ++       ++    +++ +p +lk++r+++ ++ kypa+vp++g+k++G  + +++d+++++LD +E   +  Yer++v+v+
  CCE27777.1   7 LFVYGTLM--AREVFFTVVYgdkdpPQkicdLHTFTPSVLKDFRRHRvKNVKYPAAVPEAGQKITGlLVTGLTDAMIQKLDCYE---GPDYERRSVRVQ 100
                 7*******..778766655546655115555999************97666***************999999************...9**********9 PP

                 C........TTS-EEEEEEEEETT..GGGCCS-S-SS-- CS
       GGACT  89 v.......ledgeqveawvYvyageeeegdrliesgdWr 120
                 v          ge++   vY + +      +++e  dW+
  CCE27777.1 101 VlgkigsnGFLGEEIGTSVYEFLK-----LDDLELRDWD 134
                 988877665567788999999977.....7778888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1198.69
//
Query:       CCE27778.1  [L=3912]
Description: related to the component Tra1 of the SAGA complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-73  245.6   9.7    8.1e-73  245.6   9.7    2.7  2  FAT             FAT domain
    5.5e-31  108.3   0.0    5.5e-31  108.3   0.0    2.7  2  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    1.6e-05   24.6   0.1    3.7e-05   23.5   0.1    1.7  1  FATC            FATC domain
     0.0018   18.4   0.1        6.2    7.4   0.0    4.1  2  HEAT            HEAT repeat
     0.0043   17.4   1.2         54    4.3   0.0    4.7  4  HEAT_2          HEAT repeats
  ------ inclusion threshold ------
      0.019   15.1   2.0        1.9    8.8   0.1    3.0  2  TPR_2           Tetratricopeptide repeat
      0.082   12.8   1.3        7.9    6.5   0.0    3.0  2  TPR_1           Tetratricopeptide repeat
       0.11   12.8   2.7       0.27   11.6   0.3    3.0  2  TPR_8           Tetratricopeptide repeat
          1    9.1   7.0        3.3    7.5   7.0    1.8  1  DNA_pack_N      Probable DNA packing protein, N-terminus
        1.3    9.6   9.8         56    4.4   0.0    6.6  6  HEAT_EZ         HEAT-like repeat
          6    7.0   8.8       0.98    9.5   1.6    3.0  2  DDHD            DDHD domain


Domain annotation for each model (and alignments):
>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   9.6       2.2   3.7e+03     222     276 ..    1226    1280 ..    1190    1319 .. 0.63
   2 !  245.6   9.7     5e-76   8.1e-73       2     346 .]    2842    3193 ..    2841    3193 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.2
                  C.SS-SS---............HHHHCCCTCCCCCCCCCCCT.S...-SSCCHHHH CS
         FAT  222 e.elqsgleaqkeptnleeftkllarcylkkGewqealqkldwseekieeilqsys 276 
                     lqs+l +q++ ++ +++++++ ++     + q +lq+ +++++++++ +qsy+
  CCE27778.1 1226 AlPLQSQLGQQQQHQHHQQQQQQQQQMQMQMQMQQLQLQQ-QQQQQQQQQQNQSYK 1280
                  1433444444455666666666666666666666777777.556666777777764 PP

  == domain 2  score: 245.6 bits;  conditional E-value: 5e-76
                  CCTTCCCCTSSS.GHH..CCCCT.........TSSSS--CCCHCCC...CHH--..CCHCHHCCCHCCCCCCCCCTS---SCCCCCHHHHHCCCCCH CS
         FAT    2 plaaeaaWrlgq.Wds..meeylsvlk.....kdspdkaffeaila...lhrnq..fdeakeliekarqlldtelsalvgesynraygvlvrvQmla 85  
                  +l +e+aWr+++ W++   +e+l+ +       ++p++aff+a+++   +h++q   +e+++++++a+ql ++++++l+++++n ++++l+++Q+l+
  CCE27778.1 2842 DLLLECAWRNTDmWQDaqHREALDNVIkgvmdAPTPRRAFFQAFMSllkFHNQQepGTEFARVCDEAIQLSIRKWHQLPKRLTNAHIPLLQNFQQLV 2938
                  689********99**99978888777678888**************555454336689*************************************** PP

                  HHCHHCCHHCSS-.........---TTTTTTT----TTS-TTTGCCCTTTCCCCTCCCHCCCHC....................HCCS-STTCCC.. CS
         FAT   86 Eleeiiqykqkls.........sseklksllktWrkRlpgcqdnvevwqdiltvRslvlspied....................llkgvkaemwl.. 151 
                  El++++ + q+l          +se+lk  l+ Wr+Rlp+++d++ +wqd++t+R++++s i++                    +++g ++++w+  
  CCE27778.1 2939 ELHDASGIVQELAktnsdnlnsKSEQLKGHLSAWRDRLPNVWDDITAWQDLVTWRQHIFSLINQtylqllpqqgqqnaggassfAYRGFHETAWIin 3035
                  ***********99********99************************************************************************** PP

                  CCCCCHCHHHHCCSTTHHCCCCCHCTT.....TT.TSSCCCHHHHHHHCCHHHHHSSCCHHHHCCTSSCCCSS-SS---............HH.HHC CS
         FAT  152 kfanlarksgrlslAekaLkelleedpeewlprappevvyaylKylwssgeqkealqkLreftsellekkeelqsgleaqkeptnleeftkll.arc 247 
                  +fa++ark+  +++++++L+++                      y+++++e++ea++kLre++++++e++eel+sgl+++ ++tnl++f+ ++ a++
  CCE27778.1 3036 RFAHVARKHSLPEVCISQLSRI----------------------YTLPNIEIQEAFLKLREQAKCHYENAEELSSGLDVI-NNTNLNYFNPQQkAEF 3109
                  **********************......................************************************.**************** PP

                  CCTCCCCCCCCCCCT.S...-SSCCHHHHCCHHCTCCCHSTTCCCCHHHHHCCHHHHHHSSSS.S-TCCHHHHCCT..CCHHHHTTTS.STTTCHHH CS
         FAT  248 ylkkGewqealqkldwseekieeilqsysaateidpswykawhtwalfnfevvskeeeqkeeeepedlqeyvvpavkgflksislsse.nslqdtlR 343 
                  y++kG+++e+l++       +ee+ ++y +a ++d + +kaw++w++fn++++++          +dl+  + +a++ +l+++ ++++ +s++ ++R
  CCE27778.1 3110 YTLKGMFLEKLNQ-------KEEADSAYGTALYFDIGAAKAWAEWGYFNDRKFRDD--------ASDLN-AARQALTSYLQAAGSYKSaKSRKLLAR 3190
                  *************.......9***********************************........67786.9************999999******** PP

                  HHC CS
         FAT  344 LLt 346 
                  +L+
  CCE27778.1 3191 ILW 3193
                  **8 PP

>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   3.1       7.6   1.2e+04      11      57 ..    1244    1291 ..    1220    1306 .. 0.65
   2 !  108.3   0.0   3.4e-34   5.5e-31       4     249 ..    3587    3843 ..    3584    3844 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 7.6
                      CHHHHHHHHHHHHHHHHH.HHHTTTTCCCT-------EEESSSSEEEE CS
  PI3_PI4_kinase   11 dlrqdelivqvfklmdee.lskennpkrrklalktysviplgrkcgii 57  
                      +++q +  +q+   m+++ l++++++++++ + + y+++ l++ c ++
      CCE27778.1 1244 QQQQQQQQMQMQMQMQQLqLQQQQQQQQQQQQNQSYKPVRLAQICMLM 1291
                      344445556666556555244444444555556666666666666554 PP

  == domain 2  score: 108.3 bits;  conditional E-value: 3.4e-34
                      EEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHH......... CS
  PI3_PI4_kinase    4 giykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasves......... 87  
                      ++ ++ +++r++e+i+q+f+ +++ l ++++ +rr+l+++ + ++pl+++ +++++  s+ t++ +++ ++   g+  +  v +         
      CCE27778.1 3587 VQHPAARHCRREERILQLFRHLNQTLGRKKESRRRDLQFTLPLMVPLAPHIRLVQEDTSYVTLQAVYEDHCRRMGFSKDDPVLFtleklrgvl 3679
                      6678899****************************************************************8877777777777778887665 PP

                      .HHHHCHCHCCHHHHHCC......HHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEE CS
  PI3_PI4_kinase   88 .lrvaldkkklkkekklk......fekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklih 173 
                       +++   k++l+     +      +  +++ +p+ + l++F + +p++ e++ +r+qF  +la l +++yil   +R + ++ + + sg++  
      CCE27778.1 3680 eSKSSQGKSELTP----QarlevfNAVQEKWVPSTVALDYFQQVFPQFAEFWLFRRQFSYQLAALTFMTYILYMHNRYPAKLNIARGSGNIWG 3768
                      4333333344444....2445587888899999************************************************************ PP

                      SSTTTCCTCSHCSSSS-.SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase  174 IDfGlilpdewkllpfpqekvPfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkdglilwe 249 
                       +   ++   ++++++p e vPfrlt++l+ +++p++ eg++  s + + ++l ++++ l + l ++v+d++i+w 
      CCE27778.1 3769 SELMSFMSATKPFFHNP-EPVPFRLTPNLQVLMGPLATEGIYSCSIMAIARSLTEPEHELEHALTLFVRDEMIFWL 3843
                      ***888899999*****.********************************************************95 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   2.3e-08   3.7e-05       2      32 .]    3882    3912 .]    3881    3912 .] 0.96

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.3e-08
        FATC    2 LsveqQVdrLIkeATdpeNLaqmyiGWcPww 32  
                  L+ +q+V + +  A++p+NLaq++  W+P++
  CCE27778.1 3882 LPANQTVIDAVAKAVNPTNLAQCDALWMPYL 3912
                  899**************************96 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0038       6.2       4      29 ..    1093    1118 ..    1090    1120 .. 0.90
   2 !    6.1   0.0    0.0096        16       4      31 .]    1616    1644 ..    1615    1644 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0038
                  HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    4 lllkllsDpspeVReaAakaLgalae 29  
                  ++++ l +++p+VR+aA +a+ +l++
  CCE27778.1 1093 AIVESLASDHPDVRDAAKRAIQELYK 1118
                  688999****************9987 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0096
                  HHHHHHT-.SSHHHHHHHHHHHHHHHHCS CS
        HEAT    4 lllkllsD.pspeVReaAakaLgalaevl 31  
                  ll + l+D +s   ReaA++ Lgal+ ++
  CCE27778.1 1616 LLAQILQDpKSGPLREAAVEGLGALMAKC 1644
                  56777899566669***********9876 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.044        73      10      48 ..      70     120 ..      66     163 .. 0.81
   2 ?    3.9   0.1     0.043        70      34      64 ..    1092    1122 ..    1085    1124 .. 0.85
   3 ?    4.3   0.0     0.033        54      25      57 ..    1606    1639 ..    1603    1655 .. 0.62
   4 ?   -3.3   0.0       7.5   1.2e+04      21      44 ..    2319    2345 ..    2316    2352 .. 0.55

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.044
      HEAT_2  10 ndpdpevrraairaLgrignp............ealpaLvellededpavR 48 
                 n+pd+++r+ ++++L r+ +             e++++L +l+++++++  
  CCE27778.1  70 NSPDQKLRHYVLEVLHRLPTAssptepfepfaeEIVDLLMQLVRSDNEENA 120
                 79**************8776655688899999999********99998755 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.043
      HEAT_2   34 paLvellededpavRraaaeaLgaigdpeal 64  
                  +a+ve l +++p+vR aa +a+ ++  ++a+
  CCE27778.1 1092 DAIVESLASDHPDVRDAAKRAIQELYKSAAI 1122
                  7899**************9999998777665 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.033
      HEAT_2   25 grignpealpaLvellededp.avRraaaeaLga 57  
                  gr+++ ++ ++L ++l+d+++   R+aa+e Lga
  CCE27778.1 1606 GRLDDFKYGRLLAQILQDPKSgPLREAAVEGLGA 1639
                  4555555555666666665542466666666665 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 7.5
      HEAT_2   21 iraLgrignp...ealpaLvelleded 44  
                  +++Lg+ ++    + +p L ++l++++
  CCE27778.1 2319 LWSLGNRRPAaidQHIPSLMKALQSKH 2345
                  566665554422255777777776554 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0012       1.9       6      27 ..    2774    2795 ..    2773    2800 .. 0.91
   2 ?    4.4   0.2     0.031        50       1      28 [.    3107    3134 ..    3107    3138 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0012
       TPR_2    6 nlGlayyklgdyeeAleafekA 27  
                  n Gl+y+++g +++A +++e A
  CCE27778.1 2774 NAGLSYEQNGMWDKAQKLYESA 2795
                  679****************977 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.031
       TPR_2    1 aealynlGlayyklgdyeeAleafekAl 28  
                  ae +   G+ ++kl++ eeA  a+  Al
  CCE27778.1 3107 AEFYTLKGMFLEKLNQKEEADSAYGTAL 3134
                  6889999*****************9998 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0048       7.9       6      27 ..    2774    2795 ..    2771    2797 .. 0.91
   2 ?    3.8   0.3     0.035        56       1      29 [.    3107    3135 ..    3107    3137 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0048
                  HHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1    6 nlGnayfklgkydeAleyyekA 27  
                  n G+ y ++g++d+A + ye A
  CCE27778.1 2774 NAGLSYEQNGMWDKAQKLYESA 2795
                  679****************987 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.035
                  HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1    1 akalynlGnayfklgkydeAleyyekALe 29  
                  a+ +  +G+ + kl++ +eA  +y  AL 
  CCE27778.1 3107 AEFYTLKGMFLEKLNQKEEADSAYGTALY 3135
                  78899*******************99996 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.4   2.4e+03       6      27 ..    2774    2795 ..    2773    2796 .. 0.91
   2 ?   11.6   0.3   0.00016      0.27       1      30 [.    3107    3136 ..    3107    3137 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.4
                  HHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8    6 nlgsiylklgdyeeAkeyyeka 27  
                  n g+ y++ g  ++A++ ye a
  CCE27778.1 2774 NAGLSYEQNGMWDKAQKLYESA 2795
                  7899***************976 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00016
                  CCHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8    1 aeayynlgsiylklgdyeeAkeyyekalel 30  
                  ae y ++g+ ++kl+++eeA ++y  al+ 
  CCE27778.1 3107 AEFYTLKGMFLEKLNQKEEADSAYGTALYF 3136
                  789*********************999975 PP

>> DNA_pack_N  Probable DNA packing protein, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   7.0     0.002       3.3      35     113 ..    1229    1307 ..    1203    1331 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.002
  DNA_pack_N   35 vaseleatrrdvgaevkaakalllpeLkkalkellfreasee.eaaahrkeyeaavktlkalsesdeflelseFvvrlas 113 
                  ++s+l++ ++ ++++ ++++++   +++ ++++l+ ++++++ +++++++ y+ +  ++  +  ++e l +++Fv + a+
  CCE27778.1 1229 LQSQLGQQQQ-HQHHQQQQQQQQQMQMQMQMQQLQLQQQQQQqQQQQQNQSYKPVRLAQICMLMNNELLHMNKFVRETAK 1307
                  3566775444.3333333444444456666666666555444044457789************************98765 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.2   1.9e+03      22      42 ..      97     117 ..      77     120 .. 0.87
   2 ?   -2.1   0.0       3.6   5.8e+03      14      41 ..     311     338 ..     305     351 .. 0.84
   3 ?    1.2   0.1      0.35   5.7e+02      32      53 ..    1093    1114 ..    1088    1116 .. 0.79
   4 ?   -0.4   0.1       1.1   1.8e+03       6      41 ..    1450    1486 ..    1449    1490 .. 0.90
   5 ?    2.3   0.1      0.16   2.5e+02      33      55 .]    1617    1640 ..    1615    1648 .. 0.75
   6 ?    4.4   0.0     0.034        56       8      34 ..    2319    2342 ..    2316    2348 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.2
     HEAT_EZ  22 lqplvpeilpaLlalLnddsd 42 
                  +p+ +ei+++L++l ++d+ 
  CCE27778.1  97 FEPFAEEIVDLLMQLVRSDNE 117
                 67999***********99986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.6
     HEAT_EZ  14 laggepellqplvpeilpaLlalLndds 41 
                 l+ + + +l++++p +    ++lL+d++
  CCE27778.1 311 LLRQYSSQLNDFLPTLPEVVVRLLKDCP 338
                 56678889999*****9*******9976 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.35
     HEAT_EZ   32 aLlalLnddsdeVRaaAagaLg 53  
                  a +  L +d+++VR aA +a+ 
  CCE27778.1 1093 AIVESLASDHPDVRDAAKRAIQ 1114
                  55677889*********87776 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.1
     HEAT_EZ    6 aAaw.aLGrlaggepellqplvpeilpaLlalLndds 41  
                  aAa+ aL +++++ ++l ++l++  l++ l+ L+d++
  CCE27778.1 1450 AAANdALKSVLAVDRRLPKTLLQGGLRPVLSSLSDPK 1486
                  89999**99999******************9999986 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.16
     HEAT_EZ   33 LlalLnddsd.eVRaaAagaLgnl 55  
                  L++ L+d+++ + R+aA+  Lg+l
  CCE27778.1 1617 LAQILQDPKSgPLREAAVEGLGAL 1640
                  667777877777788888777765 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.034
     HEAT_EZ    8 awaLGrlaggepellqplvpeilpaLl 34  
                  +w LG   + +p ++ +++p +++aL 
  CCE27778.1 2319 LWSLG---NRRPAAIDQHIPSLMKALQ 2342
                  89***...999***************8 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.6    0.0006      0.98     118     185 ..    1229    1369 ..    1176    1386 .. 0.45
   2 ?   -0.5   0.9      0.69   1.1e+03      90     137 ..    3267    3315 ..    3224    3417 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0006
        DDHD  118 rslelaeeesaslaessksherasesskasqeskaaesstasssaksskaee..................kvelek..................... 175 
                   + +l+++++ +  +++++++++ + + + q+ + +++++++++++++++ +                  +    k                     
  CCE27778.1 1229 LQSQLGQQQQHQHHQQQQQQQQQMQMQMQMQQLQLQQQQQQQQQQQQNQSYKpvrlaqicmlmnnellhmN----Kfvretakqsleliataagchv 1321
                  22344555555554454444444444444444444444444444443333333344444444444433330....0333333334444444444444 PP

        DDHD  176 ......................................vralnwwgRi 185 
                                                        ++ +n+w + 
  CCE27778.1 1322 wellepykerflqpiyskplralpfsvqigyinamnyhMGLKNDWVKF 1369
                  444444444444444444444444444444444444445555555555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.69
        DDHD   90 lkesltsigaalkqkvsglvssls.allnrslelaeeesaslaessksh 137 
                  l ++ ++ +++++q+  + ++s + ++ n+s+  a++es  + ++s ++
  CCE27778.1 3267 LIKKNQEEKERIRQQRAQSMASNTgKAPNASTPQAKTESDVKPDASGAS 3315
                  2222222222222222222222211122222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3912 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3228  (0.180044); expected 358.6 (0.02)
Passed bias filter:                     1030  (0.0574488); expected 358.6 (0.02)
Passed Vit filter:                       217  (0.0121033); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 2.70u 0.36s 00:00:03.06 Elapsed: 00:00:00.59
# Mc/sec: 19916.13
//
Query:       CCE27779.1  [L=245]
Description: uncharacterized protein CPUR_01253 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.049   12.9   0.0      0.065   12.5   0.0    1.1  1  EcKinase  Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.7e-06     0.065     148     236 ..      31     122 ..      19     137 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.7e-06
    EcKinase 148 glleedyvssalkeafeelleellkaalealreelpele.keaekleklkenlferllelve.ekeeefnvlnHGDlwvnNimfkydeeg.e 236
                 g+l+++ +++al++++++++  +lk+a ++++e++p+ + ++++ l+    ++++++++    e++ee n ++  D+ +  +m kyd++g +
  CCE27779.1  31 GFLNNERNEGALRNTTAKFMAPTLKKASDFMSEQFPQRSwRYDTTLRSQFRRILKEVSDASGtERKEEANCFTVSDIQRAGFMSKYDARGgR 122
                 589999999*************************999852333555555555555544443379999********************98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1802.85
//
Query:       CCE27780.1  [L=130]
Description: uncharacterized protein CPUR_01254, partial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0057   16.7   0.0      0.008   16.3   0.0    1.2  1  DUF1757   Protein of unknown function (DUF1757)


Domain annotation for each model (and alignments):
>> DUF1757  Protein of unknown function (DUF1757)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.4e-07     0.008      19     131 ..      15     126 ..      10     130 .] 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.4e-07
     DUF1757  19 pspkvElaihvtfksvqllallGgvilgPivrlllkkkrnsqkiirsavkkgqggallglvvgPvltllrlkdlseeelydrcYrlRfnkeqlrvDR.t 116
                 p p++ l++hv  + + +++llG + l  i +l+ + kr   ++ r        g +lg+ +  +    r+ + ++ e  dr +rl  nk q+++D  t
  CCE27780.1  15 PLPYTILTTHVLTRGLTTGSLLG-ITLTSIRQLIPSLKRPGPNLPRVLLAS-STGSILGVGLMALALGGRMYGRDRIEWHDRSWRLLENKGQMEMDDwT 111
                 88999******************.999999999999988888887766654.55677777766666677888999********************9854 PP

     DUF1757 117 avvlaavgflskrfq 131
                  + +++ g+    ++
  CCE27780.1 112 YIGMGLGGVGGAVVS 126
                 455555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 972.96
//
Query:       CCE27781.1  [L=610]
Description: related to anaphase control protein cut9 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-32  108.0  18.1    0.00076   19.4   0.2   10.0  9  TPR_2         Tetratricopeptide repeat
    2.8e-27   93.4  15.1    0.00013   21.7   0.3    9.9 10  TPR_1         Tetratricopeptide repeat
    3.4e-23   81.9  19.0    3.7e-05   24.1   0.1    7.8  8  TPR_19        Tetratricopeptide repeat
    7.9e-21   74.1  24.7    7.6e-10   38.9   0.3    8.8  8  TPR_12        Tetratricopeptide repeat
      8e-21   74.1  19.4    2.1e-18   66.3   0.2    5.0  6  ANAPC3        Anaphase-promoting complex, cyclosome, subunit 
    1.1e-19   68.9   7.2      0.019   15.1   0.2    9.5  9  TPR_8         Tetratricopeptide repeat
    1.3e-17   63.0  21.5      0.014   16.2   0.1    9.6  9  TPR_14        Tetratricopeptide repeat
    1.1e-16   61.2  26.0    0.00016   22.3   0.1    8.5  8  TPR_16        Tetratricopeptide repeat
    2.8e-11   42.6  18.3      0.021   14.8   0.1    8.5  8  TPR_7         Tetratricopeptide repeat
    1.3e-10   40.8  23.0     0.0011   18.7   0.1    8.3  9  TPR_10        Tetratricopeptide repeat
    4.9e-10   38.9   4.1     0.0038   16.9   0.0    6.5  7  TPR_11        TPR repeat
    4.3e-09   36.4   9.2    0.00037   20.6   1.8    5.0  4  TPR_9         Tetratricopeptide repeat
      2e-07   31.2  17.3       0.91   10.3   0.1    8.6  8  TPR_6         Tetratricopeptide repeat
    9.9e-05   22.0   0.6       0.05   13.2   0.5    3.6  3  HrpB1_HrpK    Bacterial type III secretion protein (HrpB1_Hrp
    0.00091   19.3   0.1       0.56   10.6   0.0    4.3  3  PPR           PPR repeat
  ------ inclusion threshold ------
      0.011   15.1   9.6      0.053   12.9   2.7    4.1  4  TPR_MalT      MalT-like TPR region
      0.012   15.6   6.7         20    5.2   0.3    5.1  5  SRP_TPR_like  Putative TPR-like repeat
      0.019   15.2   1.4      0.051   13.8   0.2    2.4  1  TPR_5         Tetratrico peptide repeat
      0.022   14.5   0.6         15    5.2   0.0    3.8  3  RPN7          26S proteasome subunit RPN7
      0.068   13.8  14.0          1   10.2   0.1    6.3  5  TPR_4         Tetratricopeptide repeat
       0.16   12.1   0.5         73    3.6   0.0    4.0  4  Rapsyn_N      Rapsyn N-terminal myristoylation and linker reg
       0.41   10.8   4.5         26    5.0   0.0    5.0  5  MIT           MIT (microtubule interacting and transport) dom
       0.47   10.1  16.3        2.1    8.0   0.0    4.6  5  TPR_21        Tetratricopeptide repeat-like domain
        2.4    8.3  12.5         43    4.3   0.1    5.9  6  Fis1_TPR_C    Fis1 C-terminal tetratricopeptide repeat
        5.7    7.3   9.5         10    6.5   0.1    4.9  5  TPR_20        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1    0.0028         2       5      25 ..      19      39 ..      17      40 .. 0.90
   2 !    7.5   0.0    0.0071       5.1       5      23 ..      52      70 ..      48      73 .. 0.87
   3 !   19.4   0.2   1.1e-06   0.00076       4      31 ..     123     150 ..     120     151 .. 0.93
   4 !    9.2   0.2     0.002       1.4       4      32 ..     237     265 ..     234     267 .. 0.87
   5 !    9.9   0.0    0.0012      0.86       4      27 ..     305     328 ..     302     334 .. 0.90
   6 ?    6.5   0.0     0.015        10       4      31 ..     339     366 ..     337     368 .. 0.85
   7 !   15.9   0.0   1.4e-05    0.0099       2      32 ..     405     435 ..     404     437 .. 0.91
   8 !   17.0   0.1   6.2e-06    0.0044       6      30 ..     450     474 ..     446     478 .. 0.92
   9 !   17.4   0.0   4.7e-06    0.0033       3      34 .]     481     512 ..     479     512 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0028
       TPR_2  5 ynlGlayyklgdyeeAleafe 25
                ++l+++++++g+y +A +++ 
  CCE27781.1 19 FWLAQVHFAAGNYTRAQAFLS 39
                89**************98875 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0071
       TPR_2  5 ynlGlayyklgdyeeAlea 23
                y  G +++k+ +y+eAl+ 
  CCE27781.1 52 YLAGHCLIKQSRYDEALAV 70
                889*************986 PP

  == domain 3  score: 19.4 bits;  conditional E-value: 1.1e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAleld 31 
                 ++ +G +y+k++ +++A+e+++ A+++d
  CCE27781.1 123 CFLRGICYAKQNAFDRAKECYKDAVRID 150
                 899**********************987 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.002
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldP 32 
                   ++++++y + +y++Al+  +++l+ d 
  CCE27781.1 237 QLARADLLYTQCRYQDALRITNAVLKEDK 265
                 6789****************999999886 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.0012
       TPR_2   4 lynlGlayyklgdyeeAleafekA 27 
                 + + G  y+  ++ +eA+++f kA
  CCE27781.1 305 WLAVGIYYFSIDRIAEARRYFSKA 328
                 8889*******************9 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.015
       TPR_2   4 lynlGlayyklgdyeeAleafekAleld 31 
                 +   +   ++ g++++A+ a+  A +l 
  CCE27781.1 339 WIGFAHTFAAEGEHDQAISAYSTAARLF 366
                 66667788999*************9985 PP

  == domain 7  score: 15.9 bits;  conditional E-value: 1.4e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                  +l+++G + y++++++eA+++f +Al +++
  CCE27781.1 405 LLLNEMGIVKYHQDRPKEAVQYFTAALDIAE 435
                 57999**********************9986 PP

  == domain 8  score: 17.0 bits;  conditional E-value: 6.2e-06
       TPR_2   6 nlGlayyklgdyeeAleafekAlel 30 
                 nl+ ay++l ++++Al++f+++l+l
  CCE27781.1 450 NLAHAYRRLRHFNKALDLFDEVLRL 474
                 8**********************98 PP

  == domain 9  score: 17.4 bits;  conditional E-value: 4.7e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 +  + Gl++++++++e+A++ + +Al++ P++
  CCE27781.1 481 IFSAKGLILMEQNRLEDAVAVLHQALAIHPQD 512
                 67789*************************86 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.2   1.5e+02       7      25 ..      21      39 ..      19      40 .. 0.84
   2 !    8.1   0.0    0.0034       2.4       5      22 ..      52      69 ..      48      71 .. 0.86
   3 !   21.7   0.3   1.8e-07   0.00013       4      31 ..     123     150 ..     120     152 .. 0.92
   4 ?    1.5   0.1      0.43   3.1e+02       7      25 ..     240     258 ..     234     267 .. 0.77
   5 ?    5.2   0.0     0.028        20       3      27 ..     304     328 ..     302     332 .. 0.90
   6 !    7.9   0.0    0.0039       2.8       8      30 ..     343     365 ..     337     366 .. 0.85
   7 ?   -1.4   0.0       3.5   2.5e+03       7      27 ..     376     396 ..     375     401 .. 0.85
   8 !   14.0   0.0   4.6e-05     0.033       3      31 ..     406     434 ..     404     436 .. 0.91
   9 !   16.9   0.0   5.6e-06     0.004       4      30 ..     448     474 ..     446     476 .. 0.93
  10 !   15.5   0.0   1.6e-05     0.011       2      34 .]     480     512 ..     479     512 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.2
                HHHHHHHTT-HHHHHHHHH CS
       TPR_1  7 lGnayfklgkydeAleyye 25
                l++++f  g+y  A ++ +
  CCE27781.1 21 LAQVHFAAGNYTRAQAFLS 39
                89**********9987765 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0034
                HHHHHHHHHTT-HHHHHH CS
       TPR_1  5 ynlGnayfklgkydeAle 22
                y  G+++ k+ +ydeAl+
  CCE27781.1 52 YLAGHCLIKQSRYDEALA 69
                5569************96 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 1.8e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALeln 31 
                 ++ +G +y k++ +d A e+y+ A++++
  CCE27781.1 123 CFLRGICYAKQNAFDRAKECYKDAVRID 150
                 688*********************9997 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.43
                 HHHHHHHTT-HHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyye 25 
                 ++ +++ + +y++Al   +
  CCE27781.1 240 RADLLYTQCRYQDALRITN 258
                 88999*********97555 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.028
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekA 27 
                 ++   G  yf+  +  eA  y++kA
  CCE27781.1 304 TWLAVGIYYFSIDRIAEARRYFSKA 328
                 57777999****************9 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.0039
                 HHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekALel 30 
                 ++++   g++d+A+ +y+ A +l
  CCE27781.1 343 AHTFAAEGEHDQAISAYSTAARL 365
                 788999************99665 PP

  == domain 7  score: -1.4 bits;  conditional E-value: 3.5
                 HHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekA 27 
                 lG+  + l++   A+e+ + A
  CCE27781.1 376 LGMQNHALNNMTLAEEFLKTA 396
                 67777899999*****99987 PP

  == domain 8  score: 14.0 bits;  conditional E-value: 4.6e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALeln 31 
                  l+ +G + +++ +++eA++y+  AL + 
  CCE27781.1 406 LLNEMGIVKYHQDRPKEAVQYFTAALDIA 434
                 6899**********************997 PP

  == domain 9  score: 16.9 bits;  conditional E-value: 5.6e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALel 30 
                   nl++ay++l  +++Al+ ++++L+l
  CCE27781.1 448 KTNLAHAYRRLRHFNKALDLFDEVLRL 474
                 58***********************87 PP

  == domain 10  score: 15.5 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                  ++  +G+++++++++++A++   +AL + P++
  CCE27781.1 480 AIFSAKGLILMEQNRLEDAVAVLHQALAIHPQD 512
                 567789*************************86 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00011     0.082      23      52 ..      14      42 ..       6      49 .. 0.77
   2 !   24.1   0.1   5.2e-08   3.7e-05       2      48 ..      26      71 ..      25      75 .. 0.94
   3 !    7.7   0.1     0.007         5      30      65 ..     125     161 ..     111     163 .. 0.82
   4 !   14.3   0.4   6.2e-05     0.045      22      56 ..     231     265 ..     215     271 .. 0.80
   5 !   12.3   0.0   0.00026      0.18       6      51 ..     317     362 ..     316     367 .. 0.91
   6 ?    4.9   0.1     0.053        38      10      52 ..     389     431 ..     382     434 .. 0.87
   7 !   17.6   0.4   5.7e-06    0.0041       4      66 ..     417     486 ..     414     488 .. 0.80
   8 !   11.0   0.2   0.00066      0.47       1      27 [.     489     515 ..     489     526 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00011
      TPR_19 23 knaearllLAeallalgqldeAealLdalp 52
                ++++a   LA++++a+g+++ A+a L++  
  CCE27781.1 14 DDQDAFW-LAQVHFAAGNYTRAQAFLSKQD 42
                4555555.9*****************9765 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 5.2e-08
      TPR_19  2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealL 48
                +a+g+y++A+a+l++  +    n+  r+l   +l+++ ++deA a+L
  CCE27781.1 26 FAAGNYTRAQAFLSK-QDLVSRNPSCRYLAGHCLIKQSRYDEALAVL 71
                699************.699999***********************99 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.007
      TPR_19  30 lLAeallalgqldeAealLdalpeedpdd.aryasLl 65 
                 l  +++ +++ +d A+++ +++ + d  + ++ ++L+
  CCE27781.1 125 LRGICYAKQNAFDRAKECYKDAVRIDVRCfEAFQQLM 161
                 5589***************999988887667777776 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 6.2e-05
      TPR_19  22 pknaearllLAeallalgqldeAealLdalpeedp 56 
                 + n++++l+ A++l+ + ++++A ++ +a+++ed+
  CCE27781.1 231 ATNPDLQLARADLLYTQCRYQDALRITNAVLKEDK 265
                 56******************************997 PP

  == domain 5  score: 12.3 bits;  conditional E-value: 0.00026
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdal 51 
                 + aeA +++++a   d + + a+++ A    a g+ d+A+ + +++
  CCE27781.1 317 RIAEARRYFSKASMMDTHFGPAWIGFAHTFAAEGEHDQAISAYSTA 362
                 579************************************9887765 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.053
      TPR_19  10 AlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 A ++l+ a+     ++ ++  + ++ + + +++eA +   a++
  CCE27781.1 389 AEEFLKTAYGLCKTDPLLLNEMGIVKYHQDRPKEAVQYFTAAL 431
                 8899999999999999******************999877766 PP

  == domain 7  score: 17.6 bits;  conditional E-value: 5.7e-06
      TPR_19   4 egdyaeAlalleqalqedpk.naearl......lLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                 + ++ eA++++++al+ + + n+ea +      +LA a+  l ++++A +l d++++   +da++ s+++
  CCE27781.1 417 QDRPKEAVQYFTAALDIAEEiNSEASAwlsaktNLAHAYRRLRHFNKALDLFDEVLRLGGKDAAIFSAKG 486
                 77899999999999988666666665522334466***************************99988875 PP

  == domain 8  score: 11.0 bits;  conditional E-value: 0.00066
      TPR_19   1 llaegdyaeAlalleqalqedpknaea 27 
                 l++++++++A+a l qal+  p+++ a
  CCE27781.1 489 LMEQNRLEDAVAVLHQALAIHPQDSIA 515
                 689999999999999999999998755 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.029        21       9      27 ..      21      39 ..      16      41 .. 0.75
   2 ?    4.7   0.1     0.053        38       9      25 ..      54      70 ..      49      73 .. 0.68
   3 !    7.7   0.1    0.0059       4.3      49      74 ..     124     149 ..     109     150 .. 0.84
   4 ?    3.5   0.1      0.12        87       8      25 ..     239     256 ..     233     262 .. 0.66
   5 ?    5.9   0.0     0.022        16      40      72 ..     297     329 ..     290     333 .. 0.76
   6 !    8.5   0.4    0.0033       2.4       7      75 ..     340     400 ..     337     402 .. 0.75
   7 !   38.9   0.3   1.1e-12   7.6e-10       5      74 ..     406     474 ..     403     475 .. 0.94
   8 !    9.5   0.2    0.0016       1.2       3      33 ..     479     509 ..     478     523 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.029
      TPR_12  9 laavlrrlgrydeAlelle 27
                la+v++++g+y+ A+++l 
  CCE27781.1 21 LAQVHFAAGNYTRAQAFLS 39
                7888888888888887775 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.053
      TPR_12  9 laavlrrlgrydeAlel 25
                 +++l ++ rydeAl+ 
  CCE27781.1 54 AGHCLIKQSRYDEALAV 70
                46777777777777764 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0059
      TPR_12  49 rnLgrlyralgryeeAlelleealai 74 
                 +  g++y +++ ++ A e +++a++i
  CCE27781.1 124 FLRGICYAKQNAFDRAKECYKDAVRI 149
                 56799******************998 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.12
      TPR_12   8 nlaavlrrlgrydeAlel 25 
                  +a++l+ + ry++Al++
  CCE27781.1 239 ARADLLYTQCRYQDALRI 256
                 466777777777777765 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.022
      TPR_12  40 dhpltattlrnLgrlyralgryeeAlelleeal 72 
                  hp++  t  + g++y+  +r +eA++++ +a 
  CCE27781.1 297 SHPEEPCTWLAVGIYYFSIDRIAEARRYFSKAS 329
                 577777788888888888888888888888875 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.0033
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                    a++ ++ g++d+A++ + +a +++     ++h+     ++ Lg+  +al++   A+e+l+ a+ ++
  CCE27781.1 340 IGFAHTFAAEGEHDQAISAYSTAARLF----MGTHL----PQIFLGMQNHALNNMTLAEEFLKTAYGLC 400
                 567899999**************7776....44562....35777888788888888888888777666 PP

  == domain 7  score: 38.9 bits;  conditional E-value: 1.1e-12
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 +ln+++ v +++ r  eA +++ +al+ia+++  + +++ +++  nL+ +yr+l ++ +Al+l+ e+l++
  CCE27781.1 406 LLNEMGIVKYHQDRPKEAVQYFTAALDIAEEINSEASAW-LSAKTNLAHAYRRLRHFNKALDLFDEVLRL 474
                 5778****************************9998877.7**************************986 PP

  == domain 8  score: 9.5 bits;  conditional E-value: 0.0016
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleia 33 
                 a++ +  +++l+++ r+++A + l++al+i+
  CCE27781.1 479 AAIFSAKGLILMEQNRLEDAVAVLHQALAIH 509
                 56677899*********************97 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.2     3e-21   2.1e-18      18      81 ..      10      73 ..       5      73 .. 0.95
   2 ?    2.7   0.1       0.2   1.5e+02      28      50 ..     124     148 ..     109     159 .. 0.73
   3 ?    1.7   1.6      0.44   3.1e+02      19      70 ..     230     282 ..     213     286 .. 0.67
   4 ?    0.3   0.5       1.1   8.2e+02       2      81 ..     247     327 ..     246     328 .. 0.55
   5 ?   -1.2   0.0       3.5   2.5e+03      23      78 ..     300     358 ..     280     362 .. 0.49
   6 !   13.0   0.4   0.00013     0.094      28      80 ..     445     503 ..     413     505 .. 0.74

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 3e-21
                HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3 18 aetespedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLek 81
                +++++++da++lA++++ +g+y+rA+ +l+k +l s+++ cryl+++cl+k+++y+eA+a+L++
  CCE27781.1 10 SSSHDDQDAFWLAQVHFAAGNYTRAQAFLSKQDLVSRNPSCRYLAGHCLIKQSRYDEALAVLGE 73
                67899*********************************************************85 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.2
                 HH.HHHHHHTT-HHHHHHHHHCT.S CS
      ANAPC3  28 ll.AlclylngqykrAyellrka.k 50 
                 +l + c+ +++ ++rA e +++a +
  CCE27781.1 124 FLrGICYAKQNAFDRAKECYKDAvR 148
                 33589************99998844 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.44
                 HH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT CS
      ANAPC3  19 etespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLk 70 
                  + +p+  ++ A  ly + +y+ A+++++   k+++ +  +  ++  cl++Lk
  CCE27781.1 230 LATNPDLQLARADLLYTQCRYQDALRITNAVlKEDKYNFSVYPVHLACLYELK 282
                 45555555666888888888888888888887777766666666777777665 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1.1
                 TT-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-....HHHHHHHHHCTSHHHC-HHHHHHHHHHHH.HTT-HHHHHHHH-S CS
      ANAPC3   2 qnnyknAiflaerllaaetespedayllAlclylngq....ykrAyellrkaklnskslgcrylfAqcll.kLkkyeeAiaaLek 81 
                 q +y++A+ + + +l+ ++++ +    +  cly+++     +  A++l++++      + c  l+   ++  ++++ eA++ ++k
  CCE27781.1 247 QCRYQDALRITNAVLKEDKYNFSVYPVHLACLYELKMknilFLVAHDLADSH----PEEPCTWLAVGIYYfSIDRIAEARRYFSK 327
                 6678888888888884443333332233455555555114444444444444....55566666666665367888888877765 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 3.5
                 HHHHHHH..HHHHHHTT-HHHHHHHHHCTSHHHC-H.HHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3  23 pedayll..AlclylngqykrAyellrkaklnsksl.gcrylfAqcllkLkkyeeAiaa 78 
                 +e   +l  +  +++  +  +A ++++ka   +++   +++ fA++  + +++++Ai+a
  CCE27781.1 300 EEPCTWLavGIYYFSIDRIAEARRYFSKASMMDTHFgPAWIGFAHTFAAEGEHDQAISA 358
                 44444442234555555555555555555333333344555555555555566666655 PP

  == domain 6  score: 13.0 bits;  conditional E-value: 0.00013
                 H.....HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  28 l.....lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 l     lA ++ ++  +++A++l+++  +l +k+ ++   ++  l +++++e+A+a+L 
  CCE27781.1 445 LsaktnLAHAYRRLRHFNKALDLFDEVlRLGGKDAAIFSAKGLILMEQNRLEDAVAVLH 503
                 2333336********************8888888888888888999**********996 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.044        31       5      26 ..      19      40 ..      18      47 .. 0.91
   2 ?    4.7   0.0     0.058        42       4      24 ..      51      71 ..      48      73 .. 0.88
   3 !   15.1   0.2   2.7e-05     0.019       2      31 ..     121     150 ..     120     150 .. 0.94
   4 ?    5.3   0.0     0.037        26       4      31 ..     305     332 ..     304     334 .. 0.87
   5 ?    7.0   0.0     0.011       7.8       2      29 ..     337     364 ..     336     365 .. 0.89
   6 ?    2.2   0.0      0.38   2.7e+02      12      32 ..     381     401 ..     375     403 .. 0.84
   7 ?    6.3   0.0     0.018        13      13      32 ..     416     435 ..     406     437 .. 0.82
   8 !    8.4   0.0    0.0038       2.7       3      30 ..     447     474 ..     445     474 .. 0.90
   9 !    8.0   0.0    0.0052       3.7       6      33 ..     484     511 ..     479     512 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.044
                HHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8  5 ynlgsiylklgdyeeAkeyyek 26
                ++l+++++  g+y  A++++ k
  CCE27781.1 19 FWLAQVHFAAGNYTRAQAFLSK 40
                689***************9977 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.058
                HHHHHHHHHHTT-HHHHHHHH CS
       TPR_8  4 yynlgsiylklgdyeeAkeyy 24
                 y+ g++++k+ +y+eA +++
  CCE27781.1 51 RYLAGHCLIKQSRYDEALAVL 71
                6999*************8865 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 2.7e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleld 31 
                  ++++ g +y k++ ++ Ake+y+ a+++d
  CCE27781.1 121 AMCFLRGICYAKQNAFDRAKECYKDAVRID 150
                 689************************997 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.037
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleld 31 
                 ++  g  y++  ++ eA  y+ ka  +d
  CCE27781.1 305 WLAVGIYYFSIDRIAEARRYFSKASMMD 332
                 67778889****************8776 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.011
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 +a+   +++    g++++A+++y  a +
  CCE27781.1 337 PAWIGFAHTFAAEGEHDQAISAYSTAAR 364
                 689999*****************88865 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.38
                 HHTT-HHHHHHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekaleldp 32 
                 + l+++  A+e+++ a  l +
  CCE27781.1 381 HALNNMTLAEEFLKTAYGLCK 401
                 6799************98866 PP

  == domain 7  score: 6.3 bits;  conditional E-value: 0.018
                 HTT-HHHHHHHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyekaleldp 32 
                  + + +eA++y+  al++++
  CCE27781.1 416 HQDRPKEAVQYFTAALDIAE 435
                 567899***********997 PP

  == domain 8  score: 8.4 bits;  conditional E-value: 0.0038
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekalel 30 
                 a  nl+++y+ l  +++A   + ++l+l
  CCE27781.1 447 AKTNLAHAYRRLRHFNKALDLFDEVLRL 474
                 6689******************999976 PP

  == domain 9  score: 8.0 bits;  conditional E-value: 0.0052
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpd 33 
                  +g+i+++++++e A++++ +al + p+
  CCE27781.1 484 AKGLILMEQNRLEDAVAVLHQALAIHPQ 511
                 68*********************99776 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.027        19       6      26 ..      20      40 ..      17      53 .. 0.81
   2 ?    1.9   0.0      0.73   5.2e+02       4      26 ..      51      73 ..      48      79 .. 0.83
   3 ?    5.6   0.0     0.047        34       7      41 ..     126     160 ..     120     162 .. 0.81
   4 ?    7.6   0.1     0.011       8.1       1      37 [.     234     270 ..     234     276 .. 0.87
   5 ?    3.6   0.0      0.22   1.6e+02       4      27 ..     305     328 ..     304     340 .. 0.89
   6 ?    7.5   0.0     0.012       8.4       4      33 ..     339     368 ..     336     377 .. 0.82
   7 !    9.1   0.0    0.0035       2.5       6      32 ..     409     435 ..     404     447 .. 0.80
   8 !   12.8   0.2   0.00023      0.17       7      37 ..     451     481 ..     445     486 .. 0.93
   9 !   16.2   0.1   1.9e-05     0.014       8      41 ..     486     519 ..     481     522 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.027
      TPR_14  6 alaeallalGdpdeAiallrr 26
                 la++++a+G++ +A a l +
  CCE27781.1 20 WLAQVHFAAGNYTRAQAFLSK 40
                59*************999987 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.73
      TPR_14  4 llalaeallalGdpdeAiallrr 26
                ++++++ l  + ++deA+a+l +
  CCE27781.1 51 RYLAGHCLIKQSRYDEALAVLGE 73
                7888899999*********9965 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.047
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlll 41 
                 ++  ++ +  +d+A +++++a++ +    ea  +l
  CCE27781.1 126 RGICYAKQNAFDRAKECYKDAVRIDVRCFEAFQQL 160
                 6677899999************9987776666555 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.011
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPddaea 37 
                 p+++la+a++l+++ ++++A+++ +++l+ +  +  +
  CCE27781.1 234 PDLQLARADLLYTQCRYQDALRITNAVLKEDKYNFSV 270
                 6899************************998877655 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.22
      TPR_14   4 llalaeallalGdpdeAiallrra 27 
                 +la + +++  ++ +eA++++ +a
  CCE27781.1 305 WLAVGIYYFSIDRIAEARRYFSKA 328
                 9999*****************998 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.012
      TPR_14   4 llalaeallalGdpdeAiallrralalaPd 33 
                 +   a+ ++a G++d+Ai ++  a +l+ +
  CCE27781.1 339 WIGFAHTFAAEGEHDQAISAYSTAARLFMG 368
                 6666899***************99988765 PP

  == domain 7  score: 9.1 bits;  conditional E-value: 0.0035
      TPR_14   6 alaeallalGdpdeAiallrralalaP 32 
                 +++ + +++++p+eA++++ +al+ a 
  CCE27781.1 409 EMGIVKYHQDRPKEAVQYFTAALDIAE 435
                 789999*****************9886 PP

  == domain 8  score: 12.8 bits;  conditional E-value: 0.00023
      TPR_14   7 laeallalGdpdeAiallrralalaPddaea 37 
                 la+a+++l+ + +A++l++++l+l+ +da++
  CCE27781.1 451 LAHAYRRLRHFNKALDLFDEVLRLGGKDAAI 481
                 89************************99975 PP

  == domain 9  score: 16.2 bits;  conditional E-value: 1.9e-05
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawlll 41 
                 + +l+++ ++++A+a+l++ala +P+d  a  ll
  CCE27781.1 486 GLILMEQNRLEDAVAVLHQALAIHPQDSIATELL 519
                 6789***********************9888776 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   2.5e-05     0.018       3      56 ..      21      70 ..      19      74 .. 0.83
   2 ?    2.9   0.1      0.24   1.7e+02       7      25 ..     130     148 ..     113     156 .. 0.66
   3 !    7.4   0.5    0.0096       6.9       1      27 [.     238     264 ..     215     267 .. 0.51
   4 ?   -0.2   0.0       2.3   1.7e+03      23      59 ..     294     327 ..     290     329 .. 0.71
   5 ?    7.1   0.0     0.012       8.9       3      64 ..     342     400 ..     340     404 .. 0.81
   6 ?    5.3   0.0     0.044        31      41      64 ..     411     434 ..     383     436 .. 0.80
   7 !   13.0   0.5   0.00017      0.12       2      31 ..     450     479 ..     449     484 .. 0.89
   8 !   22.3   0.1   2.2e-07   0.00016       2      47 ..     484     526 ..     483     541 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.5e-05
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaal 56
                la+ +++ag+y++A+    a+l ++   ++++  ++l g ++ +q+r++eA+a+
  CCE27781.1 21 LAQVHFAAGNYTRAQ----AFLSKQDLVSRNPSCRYLAGHCLIKQSRYDEALAV 70
                6999***********....55555544466777******************975 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.24
      TPR_16   7 alragdyddAaaaleaalk 25 
                 +++++ +d+A + ++ a++
  CCE27781.1 130 YAKQNAFDRAKECYKDAVR 148
                 5566666666666666665 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0096
      TPR_16   1 lalaraalragdyddAaaaleaalkrd 27 
                 la+a++++ + +y+dA++  +a+lk d
  CCE27781.1 238 LARADLLYTQCRYQDALRITNAVLKED 264
                 344555555555555555555555444 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 2.3
      TPR_16  23 alkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59 
                 + +++   P+ +  +l+ g  ++   r aeA+ ++ +
  CCE27781.1 294 LADSH---PEEPCTWLAVGIYYFSIDRIAEARRYFSK 327
                 55566...66666788888888888888888887766 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.012
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                  a+ +++ g+ d+A+ a+ +a +++     ++  + +lg    +++++++A+++++ a++  
  CCE27781.1 342 FAHTFAAEGEHDQAISAYSTAARLF---MGTHLPQIFLGMQNHALNNMTLAEEFLKTAYGLC 400
                 58999999***************99...7777788888888888888888888888887665 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.044
      TPR_16  41 gdaalrqgrlaeAaalyraalraa 64 
                 g + ++q r +eA++++ aal+ a
  CCE27781.1 411 GIVKYHQDRPKEAVQYFTAALDIA 434
                 5566899*************9876 PP

  == domain 7  score: 13.0 bits;  conditional E-value: 0.00017
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssP 31 
                 +la+a++r++++ +A+ +++++l++++++ 
  CCE27781.1 450 NLAHAYRRLRHFNKALDLFDEVLRLGGKDA 479
                 79************************7664 PP

  == domain 8  score: 22.3 bits;  conditional E-value: 2.2e-07
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrq 47 
                 a++++++++++ +dA+a+l++al+ +   P++  A  ll++a+ + 
  CCE27781.1 484 AKGLILMEQNRLEDAVAVLHQALAIH---PQDSIATELLNRALEET 526
                 6899**********************...*************9876 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.15   1.1e+02       5      21 ..      21      37 ..      21      41 .. 0.88
   2 ?    1.7   0.1      0.44   3.2e+02       6      22 ..      55      71 ..      49      74 .. 0.81
   3 ?    6.3   0.0     0.015        11       5      28 ..     126     147 ..     123     156 .. 0.81
   4 ?   -1.9   0.1       6.6   4.7e+03       6      20 ..     241     255 ..     238     263 .. 0.67
   5 ?    4.2   0.1     0.073        52       6      22 ..     343     359 ..     342     366 .. 0.86
   6 ?    6.4   0.0     0.014        10       6      33 ..     411     438 ..     406     441 .. 0.74
   7 !   14.8   0.1   2.9e-05     0.021       4      28 ..     450     474 ..     449     479 .. 0.89
   8 !   10.8   0.0   0.00059      0.42       5      35 ..     485     515 ..     481     516 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.15
       TPR_7  5 LarlysrlGdyeeAiel 21
                La+++++ G+y +A  +
  CCE27781.1 21 LAQVHFAAGNYTRAQAF 37
                8************9776 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.44
       TPR_7  6 arlysrlGdyeeAiely 22
                +++  ++ +y+eA+ ++
  CCE27781.1 55 GHCLIKQSRYDEALAVL 71
                778899*******9876 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.015
       TPR_7   5 LarlysrlGdyeeAielyeqsLal 28 
                  + +y +++ +++A e+y+   a+
  CCE27781.1 126 RGICYAKQNAFDRAKECYKD--AV 147
                 5789***************9..44 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 6.6
       TPR_7   6 arlysrlGdyeeAie 20 
                 a+l   + +y++A++
  CCE27781.1 241 ADLLYTQCRYQDALR 255
                 455455677777765 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.073
       TPR_7   6 arlysrlGdyeeAiely 22 
                 a+++ ++G++++Ai+ y
  CCE27781.1 343 AHTFAAEGEHDQAISAY 359
                 689999*********99 PP

  == domain 6  score: 6.4 bits;  conditional E-value: 0.014
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkdpe 33 
                 + +   + + +eA+++++++L ++++ +
  CCE27781.1 411 GIVKYHQDRPKEAVQYFTAALDIAEEIN 438
                 55545567899********998888766 PP

  == domain 7  score: 14.8 bits;  conditional E-value: 2.9e-05
       TPR_7   4 nLarlysrlGdyeeAielyeqsLal 28 
                 nLa++y+rl+++ +A++l+ ++L+l
  CCE27781.1 450 NLAHAYRRLRHFNKALDLFDEVLRL 474
                 9*******************97654 PP

  == domain 8  score: 10.8 bits;  conditional E-value: 0.00059
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltkdpeda 35 
                  + +  ++++ e+A+ ++ q+La++ ++++a
  CCE27781.1 485 KGLILMEQNRLEDAVAVLHQALAIHPQDSIA 515
                 688999*******************999886 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.26   1.8e+02       8      24 ..      21      37 ..      20      39 .. 0.90
   2 ?   -1.2   0.0       2.9   2.1e+03      15      24 ..      61      70 ..      58      73 .. 0.77
   3 ?   -1.5   0.9       3.7   2.6e+03      16      32 ..     101     117 ..      99     120 .. 0.85
   4 ?    1.7   0.0      0.34   2.5e+02      12      31 ..     130     149 ..     127     152 .. 0.90
   5 ?   -1.5   0.0       3.6   2.6e+03      25      38 ..     250     263 ..     243     264 .. 0.70
   6 ?    0.8   0.0      0.68   4.9e+02       9      26 ..     309     326 ..     307     328 .. 0.87
   7 !   14.8   0.0   2.7e-05      0.02       5      35 ..     407     437 ..     406     442 .. 0.93
   8 !   18.7   0.1   1.6e-06    0.0011       1      30 [.     444     473 ..     444     475 .. 0.96
   9 !   11.3   0.1   0.00034      0.24       9      32 ..     486     509 ..     479     509 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.26
      TPR_10  8 LanalrqrgrydeAeal 24
                La ++++ g+y++A a+
  CCE27781.1 21 LAQVHFAAGNYTRAQAF 37
                9*************876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.9
      TPR_10 15 rgrydeAeal 24
                + rydeA+a 
  CCE27781.1 61 QSRYDEALAV 70
                779****985 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.7
      TPR_10  16 grydeAealleealair 32 
                 +r++e e + e+a ++r
  CCE27781.1 101 RRREEDEVDEEHAANRR 117
                 799**********9988 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.34
      TPR_10  12 lrqrgrydeAealleealai 31 
                 + +++ +d+A + +++a++i
  CCE27781.1 130 YAKQNAFDRAKECYKDAVRI 149
                 899**************987 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 3.6
      TPR_10  25 leealairrrllGp 38 
                 +++al+i  ++l +
  CCE27781.1 250 YQDALRITNAVLKE 263
                 56777777777765 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.68
      TPR_10   9 analrqrgrydeAealle 26 
                 ++++++  r +eA++++ 
  CCE27781.1 309 GIYYFSIDRIAEARRYFS 326
                 899************985 PP

  == domain 7  score: 14.8 bits;  conditional E-value: 2.7e-05
      TPR_10   5 lnNLanalrqrgrydeAealleealairrrl 35 
                 ln ++++ +++ r +eA++++  al+i +++
  CCE27781.1 407 LNEMGIVKYHQDRPKEAVQYFTAALDIAEEI 437
                 89**************************997 PP

  == domain 8  score: 18.7 bits;  conditional E-value: 1.6e-06
      TPR_10   1 tAsslnNLanalrqrgrydeAealleeala 30 
                 ++s+ +NLa+a+r+++ +++A++l++e+l+
  CCE27781.1 444 WLSAKTNLAHAYRRLRHFNKALDLFDEVLR 473
                 899*************************97 PP

  == domain 9  score: 11.3 bits;  conditional E-value: 0.00034
      TPR_10   9 analrqrgrydeAealleealair 32 
                 + +l +++r+++A+a l++alai+
  CCE27781.1 486 GLILMEQNRLEDAVAVLHQALAIH 509
                 8899******************97 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.18   1.3e+02       1      17 [.      55      71 ..      55      73 .. 0.82
   2 ?    5.7   0.1     0.016        11       4      24 ..     130     150 ..     129     157 .. 0.93
   3 ?   -1.8   0.0       3.7   2.7e+03      26      41 ..     232     247 ..     231     247 .. 0.89
   4 !    7.9   0.0    0.0034       2.5       3      23 ..     345     365 ..     343     365 .. 0.88
   5 ?   -0.6   0.0       1.6   1.1e+03      18      41 ..     394     417 ..     382     418 .. 0.85
   6 ?    3.0   0.0      0.11        80       2      41 ..     453     492 ..     452     492 .. 0.89
   7 !   16.9   0.0   5.3e-06    0.0038       1      27 [.     486     512 ..     486     515 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.18
      TPR_11  1 GdayyeqGkyeeAieaY 17
                G+ + +q +y+eA++++
  CCE27781.1 55 GHCLIKQSRYDEALAVL 71
                5567899*******986 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.016
      TPR_11   4 yyeqGkyeeAieaYkkAlkld 24 
                 y +q+ ++ A e+Yk A+++d
  CCE27781.1 130 YAKQNAFDRAKECYKDAVRID 150
                 889*****************9 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.7
      TPR_11  26 dnaeayynLGlayykq 41 
                 +n+++ +++++++y q
  CCE27781.1 232 TNPDLQLARADLLYTQ 247
                 69*********99976 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0034
      TPR_11   3 ayyeqGkyeeAieaYkkAlkl 23 
                  + + G+ ++Ai aY++A +l
  CCE27781.1 345 TFAAEGEHDQAISAYSTAARL 365
                 68899*************876 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 1.6
      TPR_11  18 kkAlkldPdnaeayynLGlayykq 41 
                 k+A  l+ +++ +++++G + y q
  CCE27781.1 394 KTAYGLCKTDPLLLNEMGIVKYHQ 417
                 67777999**********998865 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.11
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 +ay+ +  +++A+  + + l+l  ++a ++++ Gl++++q
  CCE27781.1 453 HAYRRLRHFNKALDLFDEVLRLGGKDAAIFSAKGLILMEQ 492
                 5677777799*************************99876 PP

  == domain 7  score: 16.9 bits;  conditional E-value: 5.3e-06
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdn 27 
                 G +++eq+++e+A++++ +Al++ P++
  CCE27781.1 486 GLILMEQNRLEDAVAVLHQALAIHPQD 512
                 889*********************987 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.29   2.1e+02      35      57 ..     126     148 ..     119     152 .. 0.85
   2 ?    3.9   0.0     0.085        61      25      54 ..     298     327 ..     285     334 .. 0.88
   3 !   10.1   0.0   0.00098       0.7      28      60 ..     403     435 ..     399     447 .. 0.88
   4 !   20.6   1.8   5.1e-07   0.00037       2      69 ..     452     519 ..     451     522 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.29
       TPR_9  35 RGlllaqlGclsaAladLeayla 57 
                 RG+++a+++++  A ++   +++
  CCE27781.1 126 RGICYAKQNAFDRAKECYKDAVR 148
                 9*************999887765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.085
       TPR_9  25 aPddpeerrdRGlllaqlGclsaAladLea 54 
                 +P++p  ++  G+ ++  +++++A++ +  
  CCE27781.1 298 HPEEPCTWLAVGIYYFSIDRIAEARRYFSK 327
                 899**********************99876 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00098
       TPR_9  28 dpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 dp ++ + G++ ++++++++A++ + a+l++a+
  CCE27781.1 403 DPLLLNEMGIVKYHQDRPKEAVQYFTAALDIAE 435
                 899999***********************9987 PP

  == domain 4  score: 20.6 bits;  conditional E-value: 5.1e-07
       TPR_9   2 kaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeair 69 
                  +++ r +++ +al   + +l l  +d+      Gl+l+++++l+ A+a L ++la+ p++  a  + 
  CCE27781.1 452 AHAYRRLRHFNKALDLFDEVLRLGGKDAAIFSAKGLILMEQNRLEDAVAVLHQALAIHPQDSIATELL 519
                 67899********************************************************9998775 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1     0.018        13       4      24 ..      19      39 ..      18      40 .. 0.91
   2 ?    4.8   0.0     0.074        53       3      23 ..      51      71 ..      49      73 .. 0.89
   3 !   10.3   0.1    0.0013      0.91       2      27 ..     121     147 ..     120     149 .. 0.88
   4 ?   -1.5   0.0       7.4   5.3e+03      10      25 ..     312     327 ..     308     328 .. 0.77
   5 ?    2.3   0.0      0.45   3.3e+02      11      27 ..     347     363 ..     339     366 .. 0.76
   6 ?    1.4   0.0      0.85   6.1e+02       6      27 ..     410     431 ..     409     433 .. 0.85
   7 ?    5.4   0.0     0.046        33       5      28 ..     450     473 ..     448     474 .. 0.92
   8 ?    4.1   0.0      0.12        88       7      32 ..     486     511 ..     485     512 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.018
                HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  4 yklalsyrklgdtdkAleale 24
                ++la+ ++++g++++A + l 
  CCE27781.1 19 FWLAQVHFAAGNYTRAQAFLS 39
                89*******99*****99875 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.074
                HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  3 lyklalsyrklgdtdkAleal 23
                 y+++ +++k+ ++d+Al+ l
  CCE27781.1 51 RYLAGHCLIKQSRYDEALAVL 71
                699*******99******987 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0013
                 HH.HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 Al.yklalsyrklgdtdkAlealerli 27 
                 A+ ++++ +y k++  d+A+e +++ +
  CCE27781.1 121 AMcFLRGICYAKQNAFDRAKECYKDAV 147
                 555899*****************9887 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 7.4
                 HHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealer 25 
                 y++ ++ ++A++++ +
  CCE27781.1 312 YFSIDRIAEARRYFSK 327
                 556678899**99976 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHHHHH CS
       TPR_6  11 rklgdtdkAlealerli 27 
                  + g++d+A+ a+    
  CCE27781.1 347 AAEGEHDQAISAYSTAA 363
                 4568*********8765 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.85
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerli 27 
                 ++   + ++++ +A++++   +
  CCE27781.1 410 MGIVKYHQDRPKEAVQYFTAAL 431
                 678889999*********9876 PP

  == domain 7  score: 5.4 bits;  conditional E-value: 0.046
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +la +yr+l    kAl++++++++
  CCE27781.1 450 NLAHAYRRLRHFNKALDLFDEVLR 473
                 5899****99**********9986 PP

  == domain 8  score: 4.1 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   7 alsyrklgdtdkAlealerlikeYPd 32 
                 +l + ++++ ++A++ l + +  +P+
  CCE27781.1 486 GLILMEQNRLEDAVAVLHQALAIHPQ 511
                 67788899***************997 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.11        81      45      70 ..      48      73 ..      41      82 .. 0.87
   2 ?    1.0   0.0      0.44   3.2e+02      45      76 ..     234     265 ..     232     282 .. 0.76
   3 !   13.2   0.5     7e-05      0.05      23      90 ..     457     524 ..     426     550 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.11
  HrpB1_HrpK 45 aeldllegvlliergrweeAlrlLre 70
                +  + l g  li+++r++eAl +L e
  CCE27781.1 48 PSCRYLAGHCLIKQSRYDEALAVLGE 73
                567789999************99976 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.44
  HrpB1_HrpK  45 aeldllegvlliergrweeAlrlLreveaeas 76 
                 ++l+l  + ll  + r+++Alr+ + v +e +
  CCE27781.1 234 PDLQLARADLLYTQCRYQDALRITNAVLKEDK 265
                 56788889999999*********999986544 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 7e-05
  HrpB1_HrpK  23 asedtedaellLdalrvLrPevaeldllegvlliergrweeAlrlLreveaeasgtpyakaLlAlcLa 90 
                 +  +++ a +l d++ +L  + a++    g++l+e++r+e+A+ +L++  a +++  +a +Ll  +L+
  CCE27781.1 457 RLRHFNKALDLFDEVLRLGGKDAAIFSAKGLILMEQNRLEDAVAVLHQALAIHPQDSIATELLNRALE 524
                 6777888888999999999999999999***********************************99986 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.75   5.4e+02       9      25 ..      57      73 ..      56      73 .. 0.87
   2 ?    1.5   0.0       0.6   4.3e+02       9      27 ..     129     147 ..     128     151 .. 0.87
   3 !   10.6   0.0   0.00078      0.56       5      30 ..     450     475 ..     448     476 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.75
         PPR  9 gycknGkleeAlelfke 25
                ++ k  +++eAl ++ e
  CCE27781.1 57 CLIKQSRYDEALAVLGE 73
                788999******99976 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.6
         PPR   9 gycknGkleeAlelfkeMk 27 
                 +y+k + ++ A+e++k+ +
  CCE27781.1 129 CYAKQNAFDRAKECYKDAV 147
                 8**************9865 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00078
         PPR   5 slIsgycknGkleeAlelfkeMkekG 30 
                  l ++y + + + +Al+lf+e ++ G
  CCE27781.1 450 NLAHAYRRLRHFNKALDLFDEVLRLG 475
                 6889*****************99987 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.12        88     166     196 ..      20      50 ..      10      73 .. 0.79
   2 ?   -1.2   0.0       1.5     1e+03     123     151 ..     121     149 ..     108     166 .. 0.73
   3 ?   -1.2   0.1       1.4     1e+03     166     197 ..     341     372 ..     320     389 .. 0.73
   4 ?   12.9   2.7   7.4e-05     0.053      46     154 ..     410     511 ..     377     553 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
    TPR_MalT 166 llarialaqGdleeAetllekaeelaresnf 196
                  la++++a G+   A++ l k + + r+  +
  CCE27781.1  20 WLAQVHFAAGNYTRAQAFLSKQDLVSRNPSC 50 
                 5899999999999999999998888876555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.5
    TPR_MalT 123 fllvlladllyEwndLeeAeqhlqeGiel 151
                  ++ l++  +  +n +++A+++ + ++++
  CCE27781.1 121 AMCFLRGICYAKQNAFDRAKECYKDAVRI 149
                 45667788888899999999998888876 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.4
    TPR_MalT 166 llarialaqGdleeAetllekaeelaresnfh 197
                   a+  +a G++++A ++   a +l + ++ +
  CCE27781.1 341 GFAHTFAAEGEHDQAISAYSTAARLFMGTHLP 372
                 55777777777777777777777776666554 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 7.4e-05
    TPR_MalT  46 lGeasllqGdleaAlqalqeaeklarqadslhv.allallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeq 143
                 +G +  +q + ++A+q + +a ++a +++s    +l a + +a  ++   ++ +Al+++ + l+l    g++ +     ++   + +l E+n+Le A  
  CCE27781.1 410 MGIVKYHQDRPKEAVQYFTAALDIAEEINSEASaWLSAKTNLAHAYRRLRHFNKALDLFDEVLRL----GGKDAA----IFSAKGLILMEQNRLEDAVA 500
                 7999999**9*******************99763699999***********************96....344322....33344779************ PP

    TPR_MalT 144 hlqeGielleq 154
                  l++++++  q
  CCE27781.1 501 VLHQALAIHPQ 511
                 *****988665 PP

>> SRP_TPR_like  Putative TPR-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.081        58      76     102 ..      16      42 ..       7      49 .. 0.83
   2 ?    2.8   0.0      0.15   1.1e+02      23      41 ..      57      75 ..      51     133 .. 0.83
   3 ?    5.2   0.3     0.028        20      25      78 ..     206     267 ..     181     285 .. 0.76
   4 ?   -1.3   0.0         3   2.2e+03      24      52 ..     312     338 ..     308     343 .. 0.76
   5 ?    2.1   0.1      0.25   1.8e+02      46      71 ..     446     471 ..     412     506 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.081
  SRP_TPR_like  76 kvkvlksqvlYrlgsyekAYklLskek 102
                   +    ++qv + +g+y +A + Lsk++
    CCE27781.1  16 QDAFWLAQVHFAAGNYTRAQAFLSKQD 42 
                   5556789****************9976 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.15
  SRP_TPR_like 23 aliklekyeeaLkllkkgs 41
                  +lik  +y+eaL +l +++
    CCE27781.1 57 CLIKQSRYDEALAVLGERN 75
                  99**********9987766 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.028
  SRP_TPR_like  25 iklekyeeaLkllkkgs........alsedvrfEkaYvlYklkkykkalkilkkveaeekvk 78 
                    +l ky++   + +  +        a++ d++  +a  lY   +y++al+i + v +e+k +
    CCE27781.1 206 TRLSKYRNPAAFETAYDslsshyqlATNPDLQLARADLLYTQCRYQDALRITNAVLKEDKYN 267
                   5566666655554444445666666788899999*****************99999888765 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 3
  SRP_TPR_like  24 liklekyeeaLkllkkgsalsedvrfEka 52 
                   + ++++ +ea ++ +k+s    d++f  a
    CCE27781.1 312 YFSIDRIAEARRYFSKAS--MMDTHFGPA 338
                   678999**********99..445666555 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.25
  SRP_TPR_like  46 dvrfEkaYvlYklkkykkalkilkkv 71 
                   + +   a ++ +l++++kal ++++v
    CCE27781.1 446 SAKTNLAHAYRRLRHFNKALDLFDEV 471
                   33445566667777777777776654 PP

>> TPR_5  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   7.1e-05     0.051      17     104 ..     420     509 ..     408     512 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.1e-05
       TPR_5  17 edkavplYrraLaeG..Lagarr..rratiqLassLRnlGeaeealaLLraeleapsdelddalaaflaLvLsdlgrereavsivllalaeh 104
                 +++av+ +  aL+    ++        a+  La + R l + ++al L ++ l  +++  d+a+ +   L+L++++r ++av+++ +ala h
  CCE27781.1 420 PKEAVQYFTAALDIAeeINSEASawLSAKTNLAHAYRRLRHFNKALDLFDEVLRLGGK--DAAIFSAKGLILMEQNRLEDAVAVLHQALAIH 509
                 5667777777765331132222211368899*******************99988765..79***************************987 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.021        15      85     143 ..      20      78 ..      18      83 .. 0.89
   2 ?   -1.0   0.0       1.7   1.2e+03      39      63 ..     305     329 ..     303     338 .. 0.82
   3 ?    4.2   0.1     0.043        31      54     144 ..     422     510 ..     329     521 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.021
                 HTT-HHHHHHHHHHHHCSSS---.HHHHHHHHHHHHHHHHHTT-HHHHHHHHCTS-GGG CS
        RPN7  85 ffndwdlvskylekakellekggdwerknrlkvyeGlallairkfkeAaellldilstf 143
                 ++ + + +  +  +a++ l+k + ++r+  ++  +G  l+++ ++ eA   l + ++t+
  CCE27781.1  20 WLAQVHFAAGNYTRAQAFLSKQDLVSRNPSCRYLAGHCLIKQSRYDEALAVLGERNPTH 78 
                 56667778889999*******999***************************99998886 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.7
                 HHHHHHHHHHCT-HHHHHHHHHTCC CS
        RPN7  39 kldlaehYlkigdleeAlkaysrir 63 
                 +l+ + +Y++i  ++eA +++s++ 
  CCE27781.1 305 WLAVGIYYFSIDRIAEARRYFSKAS 329
                 5677889999999999999999864 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.043
                 HHHHHHHTCCCC--SHHHHHHHHHH.HHHHHHHTT-HHHHHHHHHHHHCSSS---.HHHHHH.....HHHHHHHHHHHTT-HHHHHHHHCTS-GGGT CS
        RPN7  54 eAlkaysrireyctslkhkidmlln.lirvaiffndwdlvskylekakellekggdwerknr.....lkvyeGlallairkfkeAaellldilstft 144
                 eA++++ ++++     ++ ++ +l+  + +a ++    + +k l+   e+l                +  ++Gl+l+++ + ++A+  l+++l+ + 
  CCE27781.1 422 EAVQYFTAALDIAEEINSEASAWLSaKTNLAHAYRRLRHFNKALDLFDEVLRL--------GgkdaaIFSAKGLILMEQNRLEDAVAVLHQALAIHP 510
                 33344444444444444444444331234444444444444444444444444........033333678999999999999999999999987665 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1    0.0014         1       5      24 ..      19      38 ..      18      40 .. 0.92
   2 ?    3.6   0.0      0.19   1.3e+02       2      25 ..      49      72 ..      48      73 .. 0.84
   3 ?    0.4   0.1       2.1   1.5e+03       8      20 ..     343     355 ..     338     358 .. 0.86
   4 ?   -1.6   0.1       8.9   6.4e+03       3      14 ..     447     458 ..     445     469 .. 0.81
   5 ?    3.8   0.0      0.16   1.2e+02       8      26 .]     486     504 ..     480     504 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0014
       TPR_4  5 laLArallalGdldeArall 24
                 +LA++++a+G++ +A+a l
  CCE27781.1 19 FWLAQVHFAAGNYTRAQAFL 38
                69***************987 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.19
       TPR_4  2 rallaLArallalGdldeAralle 25
                 ++++ +  l  + ++deA+a+l 
  CCE27781.1 49 SCRYLAGHCLIKQSRYDEALAVLG 72
                67888889999999*******995 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 2.1
       TPR_4   8 ArallalGdldeA 20 
                 A + +a G++d+A
  CCE27781.1 343 AHTFAAEGEHDQA 355
                 5667899*****9 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 8.9
       TPR_4   3 allaLArallal 14 
                 a  +LA a+ +l
  CCE27781.1 447 AKTNLAHAYRRL 458
                 667999999875 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.16
       TPR_4   8 ArallalGdldeAraller 26 
                 +  l ++ +l++A a+l++
  CCE27781.1 486 GLILMEQNRLEDAVAVLHQ 504
                 677899**********986 PP

>> Rapsyn_N  Rapsyn N-terminal myristoylation and linker region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         5   3.6e+03      13      66 ..     127     181 ..     124     187 .. 0.68
   2 ?    0.5   0.0      0.94   6.7e+02      15      51 ..     243     280 ..     234     285 .. 0.75
   3 ?    2.2   0.0      0.28     2e+02      58      78 ..     419     439 ..     407     441 .. 0.85
   4 ?    3.6   0.0       0.1        73      12      33 ..     485     506 ..     476     519 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5
    Rapsyn_N  13 GLklyesndtekalrvWrkvLkktsdregkfrvL..GcLitahsemGkykealefa 66 
                 G+   ++n  ++a + ++ +++   +  + f+ L    L+    e+ ++ e l+f 
  CCE27781.1 127 GICYAKQNAFDRAKECYKDAVRIDVRCFEAFQQLmkNSLLSPDEEW-RFLESLDFD 181
                 5666678888889999999998888888888766223455555555.677777665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.94
    Rapsyn_N  15 klyesndtekalrvWrkvLkktsdregkfrv.LGcLit 51 
                  ly +   + alr+   vLk+   +   + v L cL++
  CCE27781.1 243 LLYTQCRYQDALRITNAVLKEDKYNFSVYPVhLACLYE 280
                 689999999**********9877666666555666665 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.28
    Rapsyn_N  58 kykealefalaqldiareled 78 
                 + kea+++  a ldia+e+++
  CCE27781.1 419 RPKEAVQYFTAALDIAEEINS 439
                 5699**************986 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.1
    Rapsyn_N  12 kGLklyesndtekalrvWrkvL 33 
                 kGL l e+n  e a+ v +++L
  CCE27781.1 485 KGLILMEQNRLEDAVAVLHQAL 506
                 9****************99988 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       0.6   4.3e+02      16      32 ..     132     148 ..     120     164 .. 0.85
   2 ?    5.0   0.0     0.036        26      16      35 ..     348     367 ..     343     370 .. 0.90
   3 ?    0.4   0.0      0.96   6.9e+02      28      39 ..     421     432 ..     420     452 .. 0.65
   4 ?   -0.8   0.0       2.3   1.7e+03      25      42 ..     459     478 ..     447     487 .. 0.80
   5 ?   -0.7   0.0       2.2   1.6e+03      29      54 ..     497     524 ..     495     527 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.6
         MIT  16 nagnyeeAlelYkeale 32 
                 +++ ++ A e+Yk+a++
  CCE27781.1 132 KQNAFDRAKECYKDAVR 148
                 67788999999999986 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.036
         MIT  16 nagnyeeAlelYkealelLl 35 
                  +g+ + A+++Y++a +l++
  CCE27781.1 348 AEGEHDQAISAYSTAARLFM 367
                 58999**************8 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.96
         MIT  28 kealelLlqalk 39 
                 kea+++++ al 
  CCE27781.1 421 KEAVQYFTAALD 432
                 578888888876 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 2.3
         MIT  25 elYkealelLlqalk.e.kn 42 
                 + + +al+l+ ++l+   k+
  CCE27781.1 459 RHFNKALDLFDEVLRlGgKD 478
                 56789999999999854455 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 2.2
         MIT  29 ealelLlqalk.e.kneerrellrekie 54 
                 +a+ +L+qal+   +++   ell + +e
  CCE27781.1 497 DAVAVLHQALAiHpQDSIATELLNRALE 524
                 6788888888865777666777766655 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0029       2.1      72     141 ..      11      76 ..       5      82 .. 0.83
   2 ?    7.1   0.1    0.0056         4     139     174 ..     113     148 ..     107     159 .. 0.91
   3 ?   -2.6   0.5       5.3   3.8e+03      55      72 ..     214     231 ..     184     267 .. 0.44
   4 ?    0.3   0.1      0.67   4.8e+02     157     175 ..     347     365 ..     344     386 .. 0.79
   5 ?    2.5   1.3      0.14     1e+02     113     184 ..     445     519 ..     386     526 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0029
      TPR_21  72 taYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakke 141
                 ++  ++ a+ lA++ ++ag++ +A+a L++    +++ + + la       l+++  ydeAl+ L + ++
  CCE27781.1  11 SSHDDQDAFWLAQVHFAAGNYTRAQAFLSKQDLVSRNPSCRYLAGH----CLIKQSRYDEALAVLGERNP 76 
                 5566778899999999999999999999999999999999999975....66789999999999987665 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0056
      TPR_21 139 kkeeafaalvaelrGDilvaqgkldeAraaYqaAla 174
                 + +  f+a++  lrG  +++q+ +d A++ Y++A++
  CCE27781.1 113 AANRRFEAAMCFLRGICYAKQNAFDRAKECYKDAVR 148
                 5677899**************************985 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 5.3
      TPR_21  55 aakakeaaeeladeyggt 72 
                  a++++a+++l ++y+  
  CCE27781.1 214 PAAFETAYDSLSSHYQLA 231
                 333344444444444332 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.67
      TPR_21 157 vaqgkldeAraaYqaAlaa 175
                 +a+g+ d+A +aY+ A + 
  CCE27781.1 347 AAEGEHDQAISAYSTAARL 365
                 799***********99865 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.14
      TPR_21 113 alarlRLarvllaekkydeAlktLeakke.eafaalvaelrGDilvaqgkldeAraaYqaAlaaleeka..rell 184
                   a+  La  +    ++++Al + +++ +  + +a++   +G il++q++l++A a  ++Ala   +++  +ell
  CCE27781.1 445 LSAKTNLAHAYRRLRHFNKALDLFDEVLRlGGKDAAIFSAKGLILMEQNRLEDAVAVLHQALAIHPQDSiaTELL 519
                 33678899999999999999999988866256778899999*************999999998887776666665 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.6   1.2e+03       5      24 ..      19      38 ..      18      40 .. 0.79
   2 ?   -0.4   0.1       1.7   1.2e+03       3      22 ..      50      69 ..      49      71 .. 0.87
   3 ?    3.1   0.1      0.14        98       4      31 ..     123     150 ..     121     162 .. 0.86
   4 ?    1.8   0.1      0.36   2.5e+02      16      31 ..     249     264 ..     244     270 .. 0.84
   5 ?    4.3   0.1     0.059        43       7      29 ..     451     473 ..     450     475 .. 0.92
   6 ?    1.0   0.0      0.64   4.6e+02      17      46 ..     495     525 ..     491     532 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.6
                HHHHHHHHHHT-HHHHHHHH CS
  Fis1_TPR_C  5 YylAlGhyklgeYseArryv 24
                + lA  h+  g+Y++A  ++
  CCE27781.1 19 FWLAQVHFAAGNYTRAQAFL 38
                5677778889******8876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.7
                HHHHHHHHHHHHT-HHHHHH CS
  Fis1_TPR_C  3 clYylAlGhyklgeYseArr 22
                c Y+     +k+ +Y+eA+ 
  CCE27781.1 50 CRYLAGHCLIKQSRYDEALA 69
                8899999999********85 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHT-HHHHHHHHHHHHHHT CS
  Fis1_TPR_C   4 lYylAlGhyklgeYseArryvdalLeiE 31 
                 +++  + ++k+  +++A+++ +   +i+
  CCE27781.1 123 CFLRGICYAKQNAFDRAKECYKDAVRID 150
                 789999*************999888776 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.36
                 -HHHHHHHHHHHHHHT CS
  Fis1_TPR_C  16 eYseArryvdalLeiE 31 
                 +Y++A+r ++a+L+ +
  CCE27781.1 249 RYQDALRITNAVLKED 264
                 7************987 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.059
                 HHHHHHHHT-HHHHHHHHHHHHH CS
  Fis1_TPR_C   7 lAlGhyklgeYseArryvdalLe 29 
                 lA ++ +l+ +++A+ + d +L+
  CCE27781.1 451 LAHAYRRLRHFNKALDLFDEVLR 473
                 899***************99997 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.64
                 HHHHHHHHHHHHHHTTS-HHHHHH.HHHHHH CS
  Fis1_TPR_C  17 YseArryvdalLeiEPenrQaqsL.kelied 46 
                  ++A   + + L+i+P+ + a +L ++++e+
  CCE27781.1 495 LEDAVAVLHQALAIHPQDSIATELlNRALEE 525
                 6788899999*******99998861445555 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.98     7e+02      17      42 ..      10      35 ..       5      48 .. 0.83
   2 ?   -0.8   0.0       2.8     2e+03      21      45 ..      47      71 ..      35      74 .. 0.85
   3 ?    6.5   0.1     0.014        10      19      53 ..     231     265 ..     218     268 .. 0.87
   4 ?    0.2   0.1       1.3   9.6e+02      22      50 ..     445     473 ..     428     480 .. 0.84
   5 ?    0.1   0.1       1.4     1e+03      30      53 ..     487     510 ..     476     520 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.98
      TPR_20 17 anpddldarldlAlallaagryeeAl 42
                ++  d + ++ lA++ +aag+y  A 
  CCE27781.1 10 SSSHDDQDAFWLAQVHFAAGNYTRAQ 35
                566788999*************9986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.8
      TPR_20 21 dldarldlAlallaagryeeAleqL 45
                +   r+     l++++ry+eAl+ L
  CCE27781.1 47 NPSCRYLAGHCLIKQSRYDEALAVL 71
                5567888899999********9876 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.014
      TPR_20  19 pddldarldlAlallaagryeeAleqLleilkrdr 53 
                  ++ d++l+ A++l+ + ry++Al    ++lk+d+
  CCE27781.1 231 ATNPDLQLARADLLYTQCRYQDALRITNAVLKEDK 265
                 57889*******************98877777775 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.3
      TPR_20  22 ldarldlAlallaagryeeAleqLleilk 50 
                 l a+ +lA a+    +  +Al+++ e+l+
  CCE27781.1 445 LSAKTNLAHAYRRLRHFNKALDLFDEVLR 473
                 578999***************99888776 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 1.4
      TPR_20  30 lallaagryeeAleqLleilkrdr 53 
                 l l++++r e+A++ L + l+ + 
  CCE27781.1 487 LILMEQNRLEDAVAVLHQALAIHP 510
                 568899999999999988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 3910.63
//
Query:       CCE27782.1  [L=228]
Description: probable imidazoleglycerol-phosphate dehydratase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-58  197.7   0.2    1.4e-58  197.3   0.2    1.2  1  IGPD      Imidazoleglycerol-phosphate dehydratase


Domain annotation for each model (and alignments):
>> IGPD  Imidazoleglycerol-phosphate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.3   0.2   7.5e-63   1.4e-58       1     143 [.      62     204 ..      62     205 .. 0.99

  Alignments for each domain:
  == domain 1  score: 197.3 bits;  conditional E-value: 7.5e-63
                 ....HHHHHHHHHHHHHT--EEEEEEESSH...HHHHHHHHHHHHHHHHHHS..-SSB--EEEEEEEETTEEEEEEEE--SS-EEE--..-SB--TT.- CS
        IGPD   1 TgigfldhmLdqlakhggfdlkvkvkgdlevddHhtvedvgialGqalkealgdkrgikRfgsallpmDealaevaldlsgrpylvleaelkrekigel 99 
                 TgigfldhmL++lakh+g++ +++++gdl++ddHht ed+ ia+G a+++alg+ +g++Rfg a++p+Deal+++++dls+rpy v++  lkre +g+l
  CCE27782.1  62 TGIGFLDHMLHALAKHAGWSFAIHCEGDLHIDDHHTAEDCCIAIGYAFNKALGSLAGVARFGYAYAPLDEALSRAVIDLSNRPYSVIDLGLKREWLGKL 160
                 9************************************************************************************************** PP

                 -HHHHHHHHHHHHHHHT-EEEEEEEE--BHHHHHHHHHHHHHHH CS
        IGPD 100 dtelveeffeslaeaagitlhvkvlrgenahhivealfKafara 143
                 +te+v++ ++s+a+ a++tlhv++lrg+n+hh +e++fKa+a a
  CCE27782.1 161 STEMVPHCLQSFAQGARVTLHVDCLRGDNDHHRAESAFKALAVA 204
                 ******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1641.28
//
Query:       CCE27783.1  [L=447]
Description: probable glutamate N-acetyltransferase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.7e-150  499.2   0.7   6.5e-150  499.0   0.7    1.0  1  ArgJ      ArgJ family


Domain annotation for each model (and alignments):
>> ArgJ  ArgJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  499.0   0.7  3.6e-154  6.5e-150       2     376 .]      36     447 .]      35     447 .] 0.95

  Alignments for each domain:
  == domain 1  score: 499.0 bits;  conditional E-value: 3.6e-154
                 EEEEXXSSS.....SXXEEEEEEEEEEEEEEEEEXXSSXXHHHHHHHHHHH.HHS..EEEEEEEEEEXXXSXHHHHHHHHHHHHHHHHHHHTSXGGGEE CS
        ArgJ   2 aagvaagik...kkkkdlalivseepasaaavfTknkvkAapvkvsrevlkkkkg..aravvvnsgnANavtgeqGledaeemaeavaealgikeeevl 95 
                 a+gv +g+k   ++k+d+al++s++++saaavfTknk++Aapv++sr+ l+++++  +r v+vnsgnANavtg  Gl+da++ma  +++ +g  e++++
  CCE27783.1  36 ASGVFCGVKpgnTSKPDIALVTSDRDCSAAAVFTKNKFQAAPVTFSRKLLQDTANagLRSVIVNSGNANAVTGIGGLHDAAQMAGVTDSRVGK-ENSTI 133
                 68999****87544************************************98886579*********************************95.589** PP

                 EEEEEESSXXXXHHHHHHHHHHX....X......HHHHHHHXSSXSSXXEEEEEEEE....TEEEEEEEEEEXSSSXXXXEE--EEEEEE-----HHHH CS
        ArgJ  96 vasTGviGerlpmekieagieklvekle......eeaaeAimTTDtvpKlaavevel....gkevtiagiaKGaGmihPnmaTmLafittDaavsaeal 184
                 v+sTGviG+rlp++ki ++i++++ek++       ++a+Ai+TTDt+pKl++++++l    g e++iag++KGaGm++PnmaT+L++++tDaa+++  +
  CCE27783.1 134 VMSTGVIGQRLPIQKIVNHIPNAIEKAGskhkdwLNCAKAICTTDTFPKLMSRSFHLpsspGMEYRIAGMTKGAGMLAPNMATLLTILATDAAIAPGIM 232
                 ************************99967788889********************99887778************************************ PP

                 HHHHHHHHHHTGGGB-SSS---SS-EEEEEE--TT......TT.STTHHHHHHHHHHHHHHHHHHHHHTSTT-S-EEEEEEEEESSHHHHHHHHHHHHT CS
        ArgJ 185 qellkeavdksFnsisvDgdtSTnDtvlllAngaa......eeeeedleefeealtevlqeLakqivrDGEGatklveveVkgakseeeAkkvaksvan 277
                 +++l++avd+sFnsi+vDgdtSTnDtv+llAngaa      +e+++d+e+f+++lt+++++Lak ivrDGEGatk+v+++V +++see+A++va+s+a 
  CCE27783.1 233 TNVLRHAVDRSFNSITVDGDTSTNDTVALLANGAAggkeitSEQSPDYEAFQTVLTDFATDLAKYIVRDGEGATKFVTIRVVDCASEESARQVARSIAL 331
                 **********************************88999986779****************************************************** PP

                 -HHHHHHHHTT---HHHHHHHHHHSSS-...........--TTS-EE........TTEEEEETTEE----HHHHHHHHH-SSEEEEEE--SSSEEEEEE CS
        ArgJ 278 ssLvKtAlfGeDanwGRilaavGyagae...........ldpekvsv......llgevkvlekgepeevdeerakeilkeeeveievdlgegeeeatvw 359
                 s+LvKtAl+G+DanwGRil+a+Gya ++           + pek++v        +e+k+l +gepe+vde+ra+eil+ e++ei v+lg+g+++a  w
  CCE27783.1 332 SPLVKTALYGKDANWGRILCAAGYALISkpglpvndvpeIVPEKTNVsfiptdGSKELKLLVNGEPEQVDEQRASEILELEDLEILVKLGTGDKSAVHW 430
                 *************************86667788888889999999998888885578****************************************** PP

                 EE---HHHHHHHTT-XX CS
        ArgJ 360 tcDLsyeYvkiNadYrt 376
                 tcD+s++Yv+iN+dYrt
  CCE27783.1 431 TCDFSHDYVTINGDYRT 447
                 ****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3298.97
//
Query:       CCE27784.1  [L=466]
Description: related to translation initiation factor eIF2B,71 kDa (delta) subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-46  159.0   1.3      4e-46  157.5   1.3    1.7  1  IF-2B          Initiation factor 2 subunit family
  ------ inclusion threshold ------
       0.13   11.8   0.1       0.21   11.1   0.1    1.3  1  PP_kinase_C_1  Polyphosphate kinase C-terminal domain 1


Domain annotation for each model (and alignments):
>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5   1.3   4.5e-50     4e-46       6     278 ..     183     449 ..     178     452 .. 0.93

  Alignments for each domain:
  == domain 1  score: 157.5 bits;  conditional E-value: 4.5e-50
                 HHHHHHHHHHHHHHHHHCCCSTHHHH.....HHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHCCTTTSSHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
       IF-2B   6 paiaiaalevllevikdaktskvaeL.....keelrkaidlLkkarPtavslgnairrllkeiselksssdvkeakksliekikelike.ieeadekig 98 
                  ++  a+l ++++vi++++t++++++     ++ l+ +i++L+++rP+ +s+gnair+l+ +is+++ + +++ akk+l+e i+++i+e i+ ad +i+
  CCE27784.1 183 TSRLQATLLAFKKVIDAYTTPHGNTFsrhftSHVLNPQIEYLTACRPMCFSMGNAIRWLKMQISKIDIDLPDTIAKKELCESIDNFIHErIVLADLVIV 281
                 55667899**********************9999***************************************************************** PP

                 HHHHTTC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEEEXTTTTHHHTHHHHHHHTTXEEEEEEG.GGHHHHHHCTESEEEEEXSEEETTSEEEEE CS
       IF-2B  99 diaaelikdgdtilTicnsktvlevlraaakekkkfkVivvEsrPrlqGrltakeLvqagipvtlitd.savayvmseevdkvivGAdrilenGaiank 196
                 ++aa +i+++d+ilT+++ k + ++l +a+ ++k+f+Vi v+   +  G + ak L+ agipvt+++d  a+++ ++   + v+v A+++++nG++++ 
  CCE27784.1 282 KAAASRISHDDVILTYAHHKLIERTLLQAKADGKQFQVILVDDPFERRGIEHAKRLTAAGIPVTYVPDlGALRTNLQD-ATIVLVAAEAMFSNGSMYAH 379
                 ******************************************766999********************5589999999.******************** PP

                 TTHHHHHHHHHHTTXEEEEEXXGGGBESTSSSGGGSSXXBEXTHHHHEETTEESSTTTEEEEEBSEEEEEGGGXSEEEETTE CS
       IF-2B 197 iGTsslAvlAkefnipvlvvaeslkfservqldedifieerdpeellnitgeriaeeelkvvnpafDvtPpelItliITevG 278
                 +GT  +A +A    + v +  e++ f+erv++d+ +++e +++      ++++      + + ++fD t   +I++++Te+G
  CCE27784.1 380 AGTCDIATVATDLGVLVVALSETINFTERVSIDSLTYNEIDPE------RSTD------EGFRLLFDTTRDTYISVVVTELG 449
                 ***********************************99665543......2322......346789***************99 PP

>> PP_kinase_C_1  Polyphosphate kinase C-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   2.4e-05      0.21      48     129 ..     299     384 ..     278     405 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.4e-05
                    S--HHHHHHHHHHHTT-EEEEEES--SSS--HHHHHHHHHHHHHT-EEEE..--TT--B-...-EEEEEEE---.S---EEEEEESS- CS
  PP_kinase_C_1  48 kdskivkaLieAaengkqvtvlvElkArfdeenNiewakkleeagvkvvy..gvvglkvh...aklllvvrree.eklrryvhlgtGn 129
                    ++  i ++L++A+ +gkq +v++ +   f e++ ie ak+l++ag+ v+y   +  l++    a ++lv  +   ++ + y+h gt +
     CCE27784.1 299 HHKLIERTLLQAKADGKQFQVIL-VDDPF-ERRGIEHAKRLTAAGIPVTYvpDLGALRTNlqdATIVLVAAEAMfSNGSMYAHAGTCD 384
                    55567789**********99876.77888.6889***************944244555541114444444444324457788888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3512.03
//
Query:       CCE27785.1  [L=133]
Description: uncharacterized protein CPUR_01259 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1071.28
//
Query:       CCE27786.1  [L=1789]
Description: uncharacterized protein CPUR_01260 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
          0 1478.7   0.4          0 1478.4   0.4    1.1  1  DUF3684       Protein of unknown function (DUF3684)
    0.00037   20.3   0.0     0.0014   18.5   0.0    2.0  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
  ------ inclusion threshold ------
      0.036   14.2   0.2      0.093   12.9   0.2    1.6  1  Reprolysin_5  Metallo-peptidase family M12
       0.12   12.4   0.7       0.25   11.4   0.0    1.8  2  WLM           WLM domain
       0.14   12.2   0.0       0.58   10.3   0.0    2.1  1  Arm           Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> DUF3684  Protein of unknown function (DUF3684)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1478.4   0.4         0         0       1    1098 []     201    1289 ..     201    1289 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1478.4 bits;  conditional E-value: 0
     DUF3684    1 LtFvalesielylDdwkllkLkKklspskevsiprdletktkeglmkvtsveresvqidaevmkvvewkpkeasssekkkkkseaasasakeaaslr 97  
                  LtFvale+ie+++Dd+++l+LkKk+sp++++++prdle++tkeglmk+t+ver+s+qida++m+v++wkp++a++++k   +s+++  +++ea+slr
  CCE27786.1  201 LTFVALENIEFWIDDYQILSLKKKSSPPAAMTLPRDLEARTKEGLMKITGVERTSTQIDASYMSVIGWKPQTAATTAK--GSSDSY--ASTEAPSLR 293 
                  8**********************************************************************8777776..344444..467889*** PP

     DUF3684   98 sffsrlltssssss.akkkaakeekaeqeeiaedltelstasifLrittasvkvsvsksfaaeLeratkKppPkktklailtsskdeadaskkedea 193 
                  sff+rl tss+s++  ++k+++ee+ +q++i++d+t+  +++ifL+ t+a+++++vs+sfa+eLeratkKppPk+tk++ilt+s+dea+as+ ++e+
  CCE27786.1  294 SFFARL-TSSASQAgLRSKSKSEESMAQPQIEDDVTKAASSTIFLSATSAAIQTKVSSSFASELERATKKPPPKTTKISILTASYDEAEASEFSTEQ 389 
                  ******.666666658999999999*****************************************************************6665555 PP

     DUF3684  194 s.kkaadsiFasvlpskkeqgrifiGfptaqTTGlgahisApsvIPTVEResiDLnaryvrtWNkelLrvaGilaRiayeaEmaeikeklkkaaeks 289 
                  +  k+++++Fasvlp+kk++grifiGfpt+qTTG+g+hisApsvIPTVERe+iDLnar+vrtWN elLr+aGi++R+a+++Em e++++++ +++  
  CCE27786.1  390 AaFKTVTDVFASVLPNKKPGGRIFIGFPTMQTTGAGMHISAPSVIPTVEREAIDLNARWVRTWNVELLRAAGIVSRLAFSNEMVELSRRVQLSSDGG 486 
                  54566666**********************************************************************************9998766 PP

     DUF3684  290 kkskekediekllpealhilkfFtfreStPssevsqlieeaFftcskkasievlStrGvlsskkvRlaseelskFlkeiPvlpeelveeakefvkkL 386 
                  +k+ +++ +ek +pealhi+k+Ftf +StPs +v+q++eeaF+tc+kkasie++S++Gvl++++vR++s els Fl+++Pvlp++++++   fvkkL
  CCE27786.1  487 RKNVSSSAVEKHMPEALHIMKTFTFGDSTPSGQVGQIMEEAFWTCFKKASIEIYSSQGVLQTTQVRIESVELSGFLESVPVLPNAMKTS--LFVKKL 581 
                  6667************************************************************************************9..****** PP

     DUF3684  387 rdrglikditveDvlkeLesraLteeelveflkWlakkaasgeldeslvkeLldvavatveeeeeksekiiaLssiktflntkkipadlplPptvlp 483 
                  +d+gl+++itv+Dv++eLe++aLt++++++f++W++kk  +geld+ ++++Lldvavat++  +e+s++iiaL+si+++ + +++pa++p+Ppt+lp
  CCE27786.1  582 IDFGLLSHITVTDVKQELEAKALTKSQMMKFISWAGKKCLTGELDPGSRAALLDVAVATMT--DEQSGEIIALGSISNYPSLNNLPANVPVPPTTLP 676 
                  ***********************************************************88..789999**************************** PP

     DUF3684  484 fkltkslskaeLealgWeeLevveWlrylvesassrssleeeqdltkspkfAeqvLevlskaWdslsasskeevvelLkektviPTklGmkkpseaY 580 
                  f +t   s+aeL+algW +Lev++W ryl+e+a+sr    ee+++t+spkfA qvL +lsk+Wd++s+++k  +++lL++++v+PT+lGm++p +++
  CCE27786.1  677 FIFTTCSSSAELQALGWVPLEVLPWARYLLETADSR---VEEESVTRSPKFAVQVLVILSKNWDTISNKDKPVLASLLQSRPVMPTRLGMRRPGDSF 770 
                  ******************************888666...999******************************************************* PP

     DUF3684  581 fpsvklFdDLpvvesvkgvkekfLsalgVRktveLqviFtRLlkes..eakgkwshvdLikYLasvkddipaedlkrLketaicpaeeea.ekeskk 674 
                  fp+vklFdDLpv++++++vkekfL+a+gVRktv+L++iF+RLl+++  ++++kwsh +LikYLasv++dip++dlk+L+e+++cpae  + +  s+k
  CCE27786.1  771 FPTVKLFDDLPVIQGCEKVKEKFLVAVGVRKTVDLETIFSRLLNNAegDNEKKWSHLELIKYLASVQNDIPSDDLKKLRESRFCPAEAGPkGIASTK 867 
                  ********************************************7644449************************************887778999* PP

     DUF3684  675 ekkkrykaseLyePkdalreLglpileWpk..gkwrssseeakfLfsLGLrkfPsveelvklaasa.deelrekAlkYflanlatnkYaafdlskae 768 
                  ++k++yk+seL+ePkdalr+Lgl il+Wp+  g++r+ss+ea+fL+ LGLr+fP+v+elv+l++s+ d+ lr+ A++Yf++n+++n+Y afdls ++
  CCE27786.1  868 ASKSLYKVSELFEPKDALRTLGLSILQWPGppGSFRPSSAEARFLSLLGLRSFPTVPELVELMSSKdDDVLRTAAMAYFITNHHSNRYGAFDLSGSQ 964 
                  ****************************************************************7757899************************** PP

     DUF3684  769 kaflPvekkkegkklvkPsevftneeaavlgfkvlrkdlqahasklgvkedPpieelvnrLlkkpPkdkeeAkklFeylatrvaelseselakLska 865 
                   aflP++ +   +++v+Ps++ftne+aavlgf++lr+dl +ha+k+gv++dPp+ e+vn+Ll++pP+d+++A++lF+y+a+r++e++e++l kL++a
  CCE27786.1  965 RAFLPLQGS---AQIVAPSKCFTNEKAAVLGFRILRRDLYDHANKFGVARDPPMVECVNKLLSSPPHDHQSAATLFSYFASRITEVRENSLVKLRNA 1058
                  ******644...47*********************************************************************************** PP

     DUF3684  866 kivPvkkkkkeee.....kekkvrlvaPsqcylgeesstykkifdfvdFgseAnaFLlacGsksePtkeeiAellvkeparllellqspekYlklLr 957 
                  ++vPv+++  +++     ++++v++++Ps+ ylg+ ssty++ifdfvdFg+eAnaFL++cG+ksePtk e+A+++++eparll++lqspekY++lL+
  CCE27786.1 1059 PLVPVTRTGLAQSssrasTSTTVSHISPSRAYLGT-SSTYGEIFDFVDFGQEANAFLFHCGAKSEPTKLEVAHMACNEPARLLSVLQSPEKYMDLLK 1154
                  ******998776688898999**************.************************************************************* PP

     DUF3684  958 klAenlselkkdkellkkmkkspfLlaskeikskkkkekkekkeaeddeeedeeeeikeyqLakasdivivDdvnsyrlFkesllaaPqedlLEefy 1054
                  +lAe++s+l++dkel++k+k+sp+Lla+ke+    +++k   +     + +++e++ik+yqLa+a +iv++Dd++syrlFke+l++aP+ed+LE+fy
  CCE27786.1 1155 SLAESSSTLHRDKELWSKLKTSPCLLAYKEL-LLPSTTKG--DL---IDLDEDEAPIKQYQLASAGQIVVLDDIISYRLFKEHLICAPEEDALETFY 1245
                  *******************************.22222222..22...2346788******************************************* PP

     DUF3684 1055 laLGakrLsslvkeelrigaelkdqkkaaklrklvlERlklFLh 1098
                  l+LGa +Lss+v+e++rig ++++qk a++lrk+v+ER+k+FL+
  CCE27786.1 1246 LQLGALKLSSIVQEDVRIGPHTAKQKVAEQLRKHVVERSKIFLY 1289
                  *******************************************8 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.8e-07    0.0014       4      87 ..      39     139 ..      35     157 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.8e-07
  HATPase_c_3   4 ekAlaelvdNsldAdaenvkievn............knrgkt..............geivieDdGkGmseeelknalrlatsskeakrkstslGkkGi 75 
                  ++ l el++N+ dA+a++v ++++            +    +               ++v++ dG+  ++ +  +  r+a+ +++    +t++G +G+
   CCE27786.1  39 WTTLRELIQNAADAQATTVMVKWEtipsiqvplpstT----SrsellkhvianhtlRRLVVQNDGQPFTKTDWGRLKRIAEGNPD----ETKIGAFGV 128
                  88899*************8888885555555555541....0444555566666669***************************9....8******** PP

  HATPase_c_3  76 GlklAslslgkk 87 
                  G + +++  +++
   CCE27786.1 129 G-FYSVFADCEE 139
                  *.9888877766 PP

>> Reprolysin_5  Metallo-peptidase family M12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   2.6e-05     0.093     133     171 ..    1700    1737 ..    1655    1762 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
  Reprolysin_5  133 nsvvvstatevqvvaHElGHnfGavHDcdsssesqsCsl 171 
                    + ++  +++ + v+aHEl Hn+ + H  + s ++++++ 
    CCE27786.1 1700 RGKADAATWWWVVLAHELAHNLVSTHNSQHS-YYTESFI 1737
                    4555567889*****************9987.5555555 PP

>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.3   8.3e+03     114     168 ..    1390    1445 ..    1385    1464 .. 0.40
   2 ?   11.4   0.0   7.1e-05      0.25      86     113 ..    1712    1739 ..    1710    1768 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.3
         WLM  114 veelkakGlkegflkeGkrlggkevrnksa...eeeeekealekagiagkgarlGgrs 168 
                  ++ l+a+G++ +   + k +  +  +++ +   +ee+++ + +++++a++    G+++
  CCE27786.1 1390 LYGLRARGYNVDRILRAKAVEARIAEEERRkalAEEQKQIQDRERTWAQQ--GKGSSD 1445
                  56667777774444444444433333322221122222222333333333..333333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 7.1e-05
         WLM   86 tllHELaHnvygpHdakFyallkeLeke 113 
                  +l HELaHn+ + H+++   +++   ++
  CCE27786.1 1712 VLAHELAHNLVSTHNSQHSYYTESFIQQ 1739
                  799*************987666665555 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00016      0.58      14      33 ..     923     942 ..     918     944 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
                 HHHHHHHTTTSSHHHHHHHH CS
         Arm  14 vppLvrLLssedeevqeeAa 33 
                 vp Lv+L+ss+d++v++ Aa
  CCE27786.1 923 VPELVELMSSKDDDVLRTAA 942
                 9*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1789 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.01u 0.29s 00:00:01.30 Elapsed: 00:00:00.44
# Mc/sec: 12247.56
//
Query:       CCE27787.1  [L=416]
Description: related to HNM1-Choline permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-35  121.3  27.9    5.3e-35  121.1  27.9    1.0  1  AA_permease_2  Amino acid permease
    4.2e-19   68.5  17.5    5.7e-19   68.1  17.5    1.1  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.1  27.9   5.9e-39   5.3e-35       4     317 ..      68     393 ..      64     401 .. 0.84

  Alignments for each domain:
  == domain 1  score: 121.1 bits;  conditional E-value: 5.9e-39
  AA_permease_2   4 lsafalvigsv.ig.sgifvknlaasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaaf....gkkvaflsawfnwfayvpvla 93 
                    +s +a+++++  ++ +gi++   ++ gg  ++lw ++ +++g+++v l +aE++s+ p  g +y++++++     +k + +l++w++++a+ +++a
     CCE27787.1  68 VSFVAVATSAWeFSlFGITPG--LTDGGRPVLLWAFLWSFLGFIPVYLSMAEMASMAPIAGAQYHWVSEFApdkyQKILSYLTGWTSTLAWQAGNA 161
                    555666666658664778877..999********************************************6444378888**************97 PP

  AA_permease_2  94 si.lsv..aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpn. 185
                     + + v  ++++++++   +++   w+  l+++ai ++  + n++g +     qn ++ ++i+    +++++++++  ++  ss+   + t f n 
     CCE27787.1 162 QGmFLVgtLVQAIISINRVEYEAAYWHGSLLVMAISLIALAANVYGARLFPHWQNLVFAIHIV--AYFAFLAPVWVNAPRVESSK--VW-TGFENs 252
                    6524333688999998888*******************************************5..5799999****999999865..44.333334 PP

  AA_permease_2 186 .gwpgvllglli....vlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsva.alffeavggkvva 273
                     gwp++ l+ li     + +  G+++aa++seev+   k++p++++i ++i + l++l+ +++++ +pd   a  +++g++a +++  a+  ++v 
     CCE27787.1 253 gGWPSMSLAVLIgqmpGITTQMGIDTAAHMSEEVRDaaKTIPRVMMITFGINASLTWLTLVTAVYHIPDVAQALAEPTGYPAiSILKSAASLPWVN 348
                    6***9744333334669****************998779******************************999999999998736666666678*** PP

  AA_permease_2 274 iivvilialsllgaintavigssrvlealardgvlP..rffakvnk 317
                    +i+v +i++ l++a +++++++sr l+a+ard++lP   ++a+v+k
     CCE27787.1 349 AILV-VIVVLLMFANLSYLAAVSRDLFAFARDRGLPfsWWIARVDK 393
                    ***9.56666777889*********************666677665 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1  17.5   6.4e-23   5.7e-19      17     336 ..      83     396 ..      78     401 .. 0.81

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 6.4e-23
  AA_permease  17 vglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrfl....gpelGfviGlnylfswitvlaleltaasiliqfwelvtdl 110
                  +g+   l  +G   +l a+l +++ ++ v ls++e+a++ p +g+ y+++s+f      + l++ +G+   + w ++ a +++ ++ l+q + ++  +
   CCE27787.1  83 FGITPGLTDGGRPVLLWAFLWSFLGFIPVYLSMAEMASMAPIAGAQYHWVSEFApdkyQKILSYLTGWTSTLAWQAGNAQGMFLVGTLVQAIISINRV 180
                  5666666777776778899******************************9998622225679********************************9999 PP

  AA_permease 111 pkawvt......gavflvvlliinlvgvkvygeaefilalikiiaiiafiivg..iillaggkpnkgagfrflgdngsifknnlppgfakeeegafkn 200
                   ++ ++      ++ + ++ l+ n++g++++     + +l+  i i+a++ ++  ++++a    + +   + + ++g+    + +           ++
   CCE27787.1 181 EYEAAYwhgsllVMAISLIALAANVYGARLFPH---WQNLVFAIHIVAYFAFLapVWVNAPRVESSK-VWTGFENSGG----WPSM---------SLA 261
                  9998888*7655555555555566666666666...6666666666666666632233333333333.4445555555....4444.........488 PP

  AA_permease 201 fisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinavilt 298
                  ++++ +  + + +Gi   a +++Ev+d +k+iP++++ ++ + + +  l l++++ ++p+ +  l + +  +    ++++k++ +  + + i +vi +
   CCE27787.1 262 VLIGQMPGITTQMGIDTAAHMSEEVRDAAKTIPRVMMITFGINASLTWLTLVTAVYHIPDVAQALAEPTGYP---AISILKSAASLPWVNAILVVIVV 356
                  9999999999999*************************************************9999966644...8888888888899999999999* PP

  AA_permease 299 aalssansslysasRvlyslakdglaP..kvlkkvskrgv 336
                   ++++ +s+l++ sR l+++a+d+ +P  ++ ++v+k++v
   CCE27787.1 357 LLMFANLSYLAAVSRDLFAFARDRGLPfsWWIARVDKSRV 396
                  *************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3031.72
//
Query:       CCE27788.1  [L=373]
Description: uncharacterized protein CPUR_01262 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2947.66
//
Query:       CCE27789.1  [L=251]
Description: uncharacterized protein CPUR_01263 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-31  107.2   1.8    7.9e-31  106.2   1.2    1.9  2  MMtag     Multiple myeloma tumor-associated


Domain annotation for each model (and alignments):
>> MMtag  Multiple myeloma tumor-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   1.2   4.4e-35   7.9e-31       1      78 []      11      96 ..      11      96 .. 0.94
   2 ?   -2.2   0.0      0.29   5.2e+03      56      72 ..     151     167 ..     126     169 .. 0.66

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 4.4e-35
       MMtag  1 GsRGGrdqfkwedvksskhrenYLGhSlkapvGrwqkgkDldwyakekkkeeeeee.........erkeelkkikeaeeealaeaLG 78
                GsRGG+ +f+w++v++s+hrenYLGhSlkapvGrwqkgkDl+wyak++ +++++ +          rkeelk+ike+ee+a+a+aLG
  CCE27789.1 11 GSRGGV-NFSWDEVATSSHRENYLGHSLKAPVGRWQKGKDLNWYAKADGDDSAHPDetdearqarLRKEELKRIKETEEDAIARALG 96
                9*****.***************************************998877665568999999999*******************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.29
       MMtag  56 eerkeelkkikeaeeea 72 
                 +e   e + + e+e++ 
  CCE27789.1 151 AEAGAEAETVAEMEQRN 167
                 35667777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1885.76
//
Query:       CCE27790.1  [L=329]
Description: related to RNA polymerase II transcriptional regulation mediator MED6 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-39  132.7   0.0      1e-38  132.1   0.0    1.3  1  Med6      MED6 mediator sub complex component


Domain annotation for each model (and alignments):
>> Med6  MED6 mediator sub complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.0   5.7e-43     1e-38       1     132 [.      12     165 ..      12     166 .. 0.94

  Alignments for each domain:
  == domain 1  score: 132.1 bits;  conditional E-value: 5.7e-43
        Med6   1 iqwkspewlqal.gLtennvldYFaespFydktsnNevlkmqrqfnqaaeeal.........LkkmkGleyvlahvqep.........dlfvirkqerk 80 
                 iqw+sp+ ++++ gL++n+vl YFaespF+++tsnN++++ q+++n ++ + +         L++m+Gle+++   +ep         +++virkq+r+
  CCE27790.1  12 IQWRSPQTIASMgGLHSNTVLFYFAESPFFERTSNNAIIMSQAMNNMSMYHYIqtreafegrLRTMSGLEFMVG--EEPaetgpgmgtGVWVIRKQTRR 108
                 79**********99******************************999998887889999999************..77778999*************99 PP

        Med6  81 sat.....evtvlaaYyiiggniYqapslysvvqsrllsalsslskalkelsslakf 132
                 +++     e+tv+a ++++g+niY+ap+l+++++sr+++++s++ kal +++s++k+
  CCE27790.1 109 KQQyqeedEITVHASFFVVGENIYMAPTLADILASRIMTISSAIAKALPAADSIRKW 165
                 99555666**********************************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2467.37
//
Query:       CCE27791.1  [L=517]
Description: related to aldehyde dehydrogenase [NAD(P)] [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-81  271.7   0.0    1.1e-80  271.4   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.4   0.0   6.1e-85   1.1e-80      26     462 .]       5     436 ..       2     436 .. 0.93

  Alignments for each domain:
  == domain 1  score: 271.4 bits;  conditional E-value: 6.1e-85
                 B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHHHHHSEEEEEE.C....TTE CS
      Aldedh  26 ataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyaelaeklegevlps.s....egk 118
                 +++++vd+a+++ +++f++  + p+e R + Lr++  ++++++e++++++ ++  k  +e+   +v  + + +  +   ++  +++  p  +       
  CCE27791.1   5 SSQAQVDEAFNTVNSTFRSNVTKPLEWRIRQLRRTWWMVQDNRERIVKAIHADLNKHQQESLPvDVVGVQNACLEALHRLKAWTKDEKPRwTeplnFAV 103
                 789**********************************************************99999988888888877777755544333223343789 PP

                 EEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHH CS
      Aldedh 119 lalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehpevdkvsftGstev 217
                  a +r+eP Gv ++I++WN+P++ ++  ++ a+aaG+t +lKP+e +p+s  l++el+ +  l++ ++ v+t  g +  ++l+  +  +++ ftGst+v
  CCE27791.1 104 GARIRKEPKGVSLIISAWNYPFMELLEPMICAIAAGCTAILKPSELAPASERLIVELIPQ-YLDQSAVRVITA-GPKDMDYLLG-KTWQHIFFTGSTAV 199
                 999*********************************************************.9*********99.7888888888.689*********** PP

                 HHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTSTT-SB---SSHHH CS
      Aldedh 218 grkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpldedtdvGPliseaq 316
                 g+ i+++aa nl+ vtlElGG  p+iv+++a++d a+++i+++ f+naGQvC+ ++ ++v  si + f+++lv+ + + + g++ ++d     ++++++
  CCE27791.1 200 GKIIYAKAAPNLTTVTLELGGRGPAIVTPSANIDLAARRIANAKFLNAGQVCVGINHVFVDPSIKKPFLAALVKYFDEYRSGQANQPDYAT-RIVNNRH 297
                 ************************************************************************************9988876.89***** PP

                 HHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHH CS
      Aldedh 317 lekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvftkdleraervaer 415
                 +e++++++ +++    ++++Gg    +++ ++ f++Ptv++ vt +++++ eE+FGP+l+++ + +++ea+++  + +  La + ft++ e+ e++ ++
  CCE27791.1 298 FERLDNLLRNTRG---EIIYGG----ERNPENRFFAPTVVDAVTASDPLLSEELFGPILPILDA-TLDEALSYTAQHDHPLALYGFTTSTEEQEKILRE 388
                 *******998887...89****....456899******************************96.79******************************** PP

                 S-SSEEEESSSST--TTT.SEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 416 leaGnvyiNdsttgaaea.lpfgGvkqSglGreggkegleeytevktv 462
                  + G v++Nd + + +   +pfgGv+ Sg+G+ +g +g++e+++ +tv
  CCE27791.1 389 TNSGGVTFNDAILHMMIKdAPFGGVGPSGMGAYHGIYGFNEFIHHRTV 436
                 ***********777666669**********************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3760.00
//
Query:       CCE27792.1  [L=610]
Description: related to finger protein AZF1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-13   49.3  32.7    0.00061   20.1   0.4    5.6  5  zf-C2H2        Zinc finger, C2H2 type
    6.9e-09   35.7   3.6    6.1e-08   32.8   0.3    5.6  5  zf-H2C2_2      Zinc-finger double domain
    2.6e-05   24.7  30.8     0.0048   17.6   0.4    5.9  5  zf-C2H2_4      C2H2-type zinc finger
  ------ inclusion threshold ------
        9.9    4.9   9.8         12    4.7   9.8    1.3  1  LMBR1          LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.6   4.2e-06     0.019       3      23 .]     266     288 ..     264     288 .. 0.93
   2 !   18.7   0.9   3.8e-07    0.0017       3      23 .]     314     336 ..     313     336 .. 0.96
   3 !   20.1   0.4   1.4e-07   0.00061       1      23 []     342     364 ..     342     364 .. 0.97
   4 !   18.1   0.5   5.9e-07    0.0026       1      23 []     370     395 ..     370     395 .. 0.96
   5 ?   -6.9   4.9         4   1.8e+04      15      23 .]     517     526 ..     514     530 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.2e-06
                 ET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   3 Cp..dCgksFkrksnLkrHirtH 23 
                 C+   C+k+F +k +L  H+rtH
  CCE27792.1 266 CDgpNCDKTFGQKTHLDIHRRTH 288
                 77779*****************9 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 3.8e-07
                 ET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   3 Cp..dCgksFkrksnLkrHirtH 23 
                 Cp   C+ +F+++ nL +Hir+H
  CCE27792.1 314 CPqeNCNLVFSQRGNLITHIRRH 336
                 9999******************9 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 1.4e-07
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 + C++Cgk+F ++ n ++H  tH
  CCE27792.1 342 FSCKICGKTFAQRGNVRSHEETH 364
                 89*****************9999 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 5.9e-07
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 y C+  dC+k F++  n+k+H++  H
  CCE27792.1 370 YICKldDCNKAFSQLGNMKTHQNNfH 395
                 88********************9988 PP

  == domain 5  score: -6.9 bits;  conditional E-value: 4
                 HHHHHHHC.C CS
     zf-C2H2  15 nLkrHirt.H 23 
                 +  +H++t H
  CCE27792.1 517 QQHQHQQTqH 526
                 5556777766 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1      0.02        91      13      25 ..     262     276 ..     257     277 .. 0.82
   2 !    8.1   0.1   0.00084       3.8       2      25 ..     281     324 ..     280     325 .. 0.85
   3 !   32.8   0.3   1.4e-11   6.1e-08       1      25 [.     328     352 ..     328     353 .. 0.94
   4 !   12.4   0.3   3.7e-05      0.17       1      25 [.     356     382 ..     356     383 .. 0.92
   5 ?  -12.6  11.4         4   1.8e+04       5      10 ..     526     531 ..     521     548 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.02
   zf-H2C2_2  13 kpyeCp..lCdkaFk 25 
                 k++ C+   Cdk+F 
  CCE27792.1 262 KRWACDgpNCDKTFG 276
                 66788888******7 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00084
   zf-H2C2_2   2 LrrHirkHtgekpy..................eCp..lCdkaFk 25 
                 L  H r+H g +py                  +Cp   C+ +F+
  CCE27792.1 281 LDIHRRTHSGVRPYvsaadtlkpinkvlnrgqHCPqeNCNLVFS 324
                 667***********999999999999999999999888887775 PP

  == domain 3  score: 32.8 bits;  conditional E-value: 1.4e-11
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 nL  Hir Htgekp+ C+ C+k+F+
  CCE27792.1 328 NLITHIRRHTGEKPFSCKICGKTFA 352
                 6889********************8 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 3.7e-05
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFk 25 
                 n r H  +H+g kpy C+   C+kaF+
  CCE27792.1 356 NVRSHEETHKGLKPYICKldDCNKAFS 382
                 5689**************999*****7 PP

  == domain 5  score: -12.6 bits;  conditional E-value: 4
   zf-H2C2_2   5 HirkHt 10 
                 H+  H+
  CCE27792.1 526 HTQHHH 531
                 666533 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.4    0.0009       4.1       4      23 ..     269     288 ..     264     289 .. 0.86
   2 !   11.0   0.5   0.00015      0.67       3      23 ..     314     336 ..     313     337 .. 0.93
   3 !   17.6   0.4   1.1e-06    0.0048       1      23 [.     342     364 ..     342     365 .. 0.95
   4 !    9.1   0.3   0.00058       2.6       1      24 []     370     395 ..     370     395 .. 0.92
   5 ?   -7.6   5.7         4   1.8e+04      17      24 .]     524     531 ..     514     531 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0009
   zf-C2H2_4   4 piCgksFsskkaLlrHlkth 23 
                 p C+k+F  k++L  H +th
  CCE27792.1 269 PNCDKTFGQKTHLDIHRRTH 288
                 34*****************9 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00015
   zf-C2H2_4   3 Cpi..CgksFsskkaLlrHlkth 23 
                 Cp+  C+ +Fs + +L +H+++h
  CCE27792.1 314 CPQenCNLVFSQRGNLITHIRRH 336
                 99999*****99999*******9 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 1.1e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f C+iCgk+F  + ++++H +th
  CCE27792.1 342 FSCKICGKTFAQRGNVRSHEETH 364
                 89********************9 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00058
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkthH 24 
                 ++C++  C+k Fs   ++++H ++ H
  CCE27792.1 370 YICKLddCNKAFSQLGNMKTHQNNFH 395
                 7899999**************99887 PP

  == domain 5  score: -7.6 bits;  conditional E-value: 4
   zf-C2H2_4  17 lrHlkthH 24 
                  +H + hH
  CCE27792.1 524 TQHTQHHH 531
                 34555555 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   9.8    0.0026        12     217     321 ..     396     507 ..     166     543 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0026
       LMBR1 217 eeaereledllkevkklrksisesdp.lrkyleeilkkvPeeiaeklks....nenkteeslaklekqlikalqkrertekqwkrlleka...leledi 307
                 +e+ r+l  +  + +++ +   e  + +++y+ e  k++++ i+ + k+     ++++++s ++ e+q++++ ++ +++++q ++  +++    + +  
  CCE27792.1 396 KETLRDLTATFAKFSQMGEVPHEH-ReIYEYFREHYKNSNKGIKGRGKArtvaVRKPKMNSTQQQEQQQPQQQHQLRQEQQQQQQQQQQQqqqQHSQHS 493
                 222233333333344333333222.32556666666666666666666577764444555555555555555555555555544444444000222222 PP

       LMBR1 308 iknksskekefkss 321
                   ++ s++++  ++
  CCE27792.1 494 QHQQYSQHQHYTHQ 507
                 22222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4932  (0.275085); expected 358.6 (0.02)
Passed bias filter:                      904  (0.0504211); expected 358.6 (0.02)
Passed Vit filter:                       409  (0.0228122); expected 17.9 (0.001)
Passed Fwd filter:                       106  (0.00591221); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.87u 0.36s 00:00:02.23 Elapsed: 00:00:00.58
# Mc/sec: 3157.32
//
Query:       CCE27793.1  [L=823]
Description: related to ELP2-29 kDa subunit of elongator and elongating RNA polymerase II holoenzyme [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-31  107.1  16.8     0.0014   19.4   0.0   12.1 12  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.087   11.8   0.3         17    4.2   0.0    4.0  5  Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping prot


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.4e-05      0.21       7      38 .]      55      92 ..      51      92 .. 0.73
   2 !   14.3   0.0   6.6e-06     0.059       6      38 .]     106     144 ..     101     144 .. 0.78
   3 !   19.4   0.0   1.6e-07    0.0014       6      37 ..     207     245 ..     202     246 .. 0.82
   4 !    6.9   0.1    0.0014        13       8      37 ..     297     330 ..     288     331 .. 0.78
   5 ?    0.3   0.2      0.16   1.5e+03      14      27 ..     366     378 ..     354     391 .. 0.71
   6 !   17.3   0.4   7.4e-07    0.0066       7      36 ..     403     433 ..     397     435 .. 0.87
   7 ?    2.0   0.0     0.048   4.3e+02      10      35 ..     458     483 ..     451     486 .. 0.76
   8 !    9.6   0.1   0.00019       1.7       7      29 ..     579     602 ..     574     611 .. 0.83
   9 ?    3.5   0.0     0.017   1.5e+02       9      32 ..     629     653 ..     622     658 .. 0.79
  10 !   15.5   0.0   2.7e-06     0.024       4      38 .]     672     708 ..     669     708 .. 0.81
  11 ?   -2.5   0.0       1.3   1.2e+04      11      19 ..     729     737 ..     718     750 .. 0.68
  12 ?    2.8   0.0     0.028   2.5e+02      18      37 ..     795     813 ..     765     814 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.4e-05
                EESS.SSEEEEE.....EETTSSEEEEEETTSEEEEEE CS
        WD40  7 ltGH.ssvtsla.....fspdgawlasGsdDgtvriWd 38
                l+GH   v ++        +  ++++sGsdD+t+ +W+
  CCE27793.1 55 LRGHkETVKAVLflpqdGGDQASYIVSGSDDKTLIVWK 92
                67885448888755555445555699***********6 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 6.6e-06
                 EEESS.SSEEEEE....EETTSSEE.EEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtsla....fspdgawl.asGsdDgtvriWd 38 
                 t + H  +v+++      ++  +w+ a+G  D t+riW+
  CCE27793.1 106 TSSEHtAPVNCVTavrvADQPAKWIiATGAADATIRIWS 144
                 5567977788888888999999996269989*******5 PP

  == domain 3  score: 19.4 bits;  conditional E-value: 1.6e-07
                 EEESS.SSEEEEE.....EETTSSE.EEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtsla.....fspdgaw.lasGsdDgtvriW 37 
                 +l GH ++v+sl+      s d+++ las+s D+ +riW
  CCE27793.1 207 VLQGHeGWVRSLSftretASEDSDLlLASASQDKYIRIW 245
                 689**999*****888887777777446789******** PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0014
                 ESS.SSEEEEEEETTSSE...EEEEETTSEEEEE CS
        WD40   8 tGH.ssvtslafspdgaw...lasGsdDgtvriW 37 
                  GH ++++s +++ + +    l+s s D+++ iW
  CCE27793.1 297 LGHeDWIYSARWHTNAQGklqLLSTSADNSLAIW 330
                 49*888****76666666889666777******* PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.16
                 EEEEEETTSSEEEE CS
        WD40  14 tslafspdgawlas 27 
                 t+l +spdg+ +a+
  CCE27793.1 366 TGL-WSPDGTSVAC 378
                 667.******9974 PP

  == domain 6  score: 17.3 bits;  conditional E-value: 7.4e-07
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 +tGH + vt++ +s++g++l+s s D+t r+
  CCE27793.1 403 ITGHtKAVTGVTWSKSGSYLLSTSLDQTSRL 433
                 58**999**************9999*99776 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.048
                 S.SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtvr 35 
                 H  + +++++ +d +++ sG d +  r
  CCE27793.1 458 HgYDLNCIDTLDDTQFV-SGADEKLMR 483
                 533589**********7.799666555 PP

  == domain 8  score: 9.6 bits;  conditional E-value: 0.00019
                 EESSSS.EEEEEEETTSSEEEEEE CS
        WD40   7 ltGHss.vtslafspdgawlasGs 29 
                 l GH+  +++la s+dg+++as++
  CCE27793.1 579 LYGHGYeISCLAASHDGKLVASAC 602
                 679*446*************9876 PP

  == domain 9  score: 3.5 bits;  conditional E-value: 0.017
                 SSSSE..EEEEEETTSSEEEEEETTS CS
        WD40   9 GHssv..tslafspdgawlasGsdDg 32 
                 +H s   t l+fs d ++l+s ++D+
  CCE27793.1 629 AH-SLttTRLRFSGDDQYLLSVGRDR 653
                 56.43337999*********989898 PP

  == domain 10  score: 15.5 bits;  conditional E-value: 2.7e-06
                 EEEEESSSS.EEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgawl.asGsdDgtvriWd 38 
                 +  l+GHs  + + a+ p+++ l a++++D+ vriW+
  CCE27793.1 672 QSNLKGHSRmILDAAWAPSSRPLfATAGRDKQVRIWS 708
                 55699**6699***988888886368899*******5 PP

  == domain 11  score: -2.5 bits;  conditional E-value: 1.3
                 SSEEEEEEE CS
        WD40  11 ssvtslafs 19 
                 +svt+++f 
  CCE27793.1 729 GSVTAVDFL 737
                 348888754 PP

  == domain 12  score: 2.8 bits;  conditional E-value: 0.028
                 EETTSSEEEEEETTSEEEEE CS
        WD40  18 fspdgawlasGsdDgtvriW 37 
                  sp+ ++ ++ ++D ++r++
  CCE27793.1 795 ASPSYTLAVA-GEDSSLRVF 813
                 5677777665.55*****97 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0     0.084   7.6e+02     257     288 ..     128     161 ..     119     191 .. 0.73
   2 ?   -0.2   0.0     0.044   3.9e+02     156     217 ..     186     248 ..     173     252 .. 0.57
   3 ?    0.6   0.0     0.024   2.2e+02     189     217 ..     363     391 ..     307     457 .. 0.76
   4 ?    4.2   0.0    0.0019        17      20      53 ..     584     617 ..     575     674 .. 0.75
   5 ?   -1.4   0.0     0.099   8.9e+02     183     216 ..     674     709 ..     651     719 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.084
    Ge1_WD40 257 rfaitgadnnselklWscel..WtClqtikfaps 288
                 +++i++  ++  +++Ws e    + lq+++ +p+
  CCE27793.1 128 KWIIATGAADATIRIWSLENdqLQLLQAVQTTPK 161
                 7788888888999999987521556777776666 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.044
    Ge1_WD40 156 eiwsvdmiaskygsgelsveeieegllkieehsliveaafspdGt.alatasedGevkffqvy 217
                 e  ++ +  s  + ++ +v ++ +g     +    +  + s d    la as+d +++ ++++
  CCE27793.1 186 ETVQIYTADSTTSDINFTVRAVLQGHEGWVRSLSFTRETASEDSDlLLASASQDKYIRIWRIH 248
                 444444444444455555555555444433344455556666654157999999999999886 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.024
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqvy 217
                    ++ +spdGt++a     G  + +   
  CCE27793.1 363 GFWTGLWSPDGTSVACLGRTGSWRRWEYD 391
                 56778899999999998888887777654 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.0019
    Ge1_WD40  20 yvGqLvavhregkylayaikvkntgeglvrvvnk 53 
                 y    +a +++gk++a a k+++t ++++r+ ++
  CCE27793.1 584 YEISCLAASHDGKLVASACKASSTNHAVIRLFET 617
                 55566788889*******************9764 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 0.099
    Ge1_WD40 183 kieehs.liveaafspdGtal.atasedGevkffqv 216
                 +++ hs +i +aa++p    l ata  d +v+ +  
  CCE27793.1 674 NLKGHSrMILDAAWAPSSRPLfATAGRDKQVRIWSA 709
                 567777678899999887654389999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5838.64
//
Query:       CCE27794.1  [L=113]
Description: uncharacterized protein CPUR_01268 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-21   74.5   4.5    4.6e-21   74.2   4.5    1.2  1  SPT_ssu-like  Small subunit of serine palmitoyltransferase-li
  ------ inclusion threshold ------
        1.1    9.2   5.4       0.71    9.8   2.6    1.8  2  Ferlin_C      Ferlin C-terminus


Domain annotation for each model (and alignments):
>> SPT_ssu-like  Small subunit of serine palmitoyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   4.5   5.2e-25   4.6e-21       2      52 ..       9      59 ..       8      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 5.2e-25
  SPT_ssu-like  2 nwlsrkiylyevtfglYMLepwEkflfnilifillsllliaaslYlpshis 52
                  +wl++k+y +evtf+l+M+  wEk ++++++f+l+s++liaa+lYlp+hi 
    CCE27794.1  9 RWLRQKQYTFEVTFALNMFRSWEKSVIYSVLFLLISMTLIAAILYLPHHIT 59
                  9************************************************97 PP

>> Ferlin_C  Ferlin C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.6   7.9e-05      0.71     113     151 ..      21      59 ..       9      61 .. 0.91
   2 ?   -0.1   0.0     0.089     8e+02      70      93 ..      83     106 ..      69     112 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 7.9e-05
    Ferlin_C 113 tfiffiWkkykkyiiallilallalflvlllytlPgqis 151
                 tf+  ++++++k +i+ ++ +l++++l++ +  lP +i+
  CCE27794.1  21 TFALNMFRSWEKSVIYSVLFLLISMTLIAAILYLPHHIT 59 
                 7888899**********************9999***997 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.089
    Ferlin_C  70 elelltkeeAekepvGkgrkepep 93 
                  +++++   Ae  p G++ ke  +
  CCE27794.1  83 AIKVVSATVAEVLPTGETVKEAVA 106
                 478899999999999998877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 846.51
//
Query:       CCE27795.1  [L=230]
Description: related to polypeptide chain release factors [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-24   83.6   3.7    1.5e-23   83.0   3.7    1.3  1  RF-1      RF-1 domain


Domain annotation for each model (and alignments):
>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   3.7   8.2e-28   1.5e-23       8     110 ..      83     182 ..      82     188 .. 0.83

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 8.2e-28
                 -GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-..S.-S---S--ECEEEE CS
        RF-1   8 dekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkk.ekkkigtgssekiRtyn 105
                 +e+++e  + + sG+GGQ++Nkt+saV+l hlptg ivv++q +Rs+ +Nr+ A+e+L++k+ + +  ++ +++      + ++kki+  + + +R+y 
  CCE27795.1  83 PESEIEEAFLKGSGPGGQKINKTSSAVQLKHLPTG-IVVKSQATRSRDQNRKIAREILAQKVDDFRNGDQSRAAIVG---EiKRKKIENVRRKSRRKYR 177
                 5899*******************************.8*************************886444444444333...3455778888888999999 PP

                 CGCTT CS
        RF-1 106 kkpqs 110
                 k +q+
  CCE27795.1 178 KLEQE 182
                 86665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1128  (0.0629148); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1762.89
//
Query:       CCE27796.1  [L=375]
Description: probable Actin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-150  500.6   0.0   9.6e-150  498.7   0.0    1.7  1  Actin     Actin


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  498.7   0.0  5.4e-154  9.6e-150       2     407 .]       3     375 .]       2     375 .] 0.98

  Alignments for each domain:
  == domain 1  score: 498.7 bits;  conditional E-value: 5.4e-154
       Actin   2 devsavVlDnGssttraGyagedaPkavipslvgkprgrkvea.....klyvgdealtkrpelevrspvedGvvedwdaveelwehvlkeelkvdpeeh 95 
                 +ev a+V+DnGs++++aG+ag+daP+av+ps+vg+pr++  +      + yvgdea++kr+ l++r+p+e+Gvv++wd++e++w+h++++el+v peeh
  CCE27796.1   3 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIgmgqkDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEH 101
                 689************************************9887999999************************************************** PP

       Actin  96 pllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssknvev 194
                 p+llte+p np+++rek+++ivfE+f+ pa+y++ +avls++asg++tg+v+DsG++vt+vvp+++G++L +ai+r+d++G++Lt++l+++l ++    
  CCE27796.1 102 PVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFALPHAIARVDMAGRDLTDYLMKILAER---- 196
                 **********************************************************************************************8.... PP

       Actin 195 tprylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpeg..deeksssspeksYeLPDgseiklgeeRfkvpEiLFdpsligs 291
                                           +++++t++e+e++++iKe++c+v+ d+e+  +++++ss  eksYeLPDg++i++g+eRf++pE+LF+ps +g 
  CCE27796.1 197 --------------------------GYAFSTTAEREIVRDIKEKLCYVALDFEQeiQTASQSSTLEKSYELPDGQVITIGNERFRAPEALFQPSVLGL 269
                 ..........................9***************************97777777799********************************** PP

       Actin 292 esaleeekskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaqlaskgvkvkiiapeeerkysaWiGGSiLAslgtfqqlwvs 390
                 es          gi+  +++++++cdvd+r++L+ niv++GG++++pgl++R++ke+++la++++kvkiiap+ erkys+WiGGSiLAsl+tfqq+w+s
  CCE27796.1 270 ESG---------GIHVTTFNSVMKCDVDVRKDLYGNIVMSGGTTMYPGLSDRMQKEITALAPSSMKVKIIAPP-ERKYSVWIGGSILASLSTFQQMWIS 358
                 ***.........*************************************************************.************************* PP

       Actin 391 kqEYeEqGssvverkck 407
                 kqEY+E+G+s+v+rkc+
  CCE27796.1 359 KQEYDESGPSIVHRKCF 375
                 ****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2646.66
//
Query:       CCE27797.1  [L=352]
Description: uncharacterized protein CPUR_01271 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.9e-10   38.3   0.1    1.7e-09   37.5   0.1    1.4  1  Epimerase       NAD dependent epimerase/dehydratase family
    9.9e-09   34.6   0.0    1.5e-08   34.0   0.0    1.3  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    3.8e-07   29.5   0.7     0.0015   17.8   0.0    2.2  2  NAD_binding_4   Male sterility protein
    8.5e-07   29.0   0.0    5.4e-06   26.4   0.0    2.0  2  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
      0.071   12.5   0.0       0.13   11.7   0.0    1.5  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
      0.085   12.4   0.0       0.24   10.9   0.0    1.7  2  NmrA            NmrA-like family


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.1   5.8e-13   1.7e-09       1     228 [.       7     255 ..       7     262 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 5.8e-13
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HHHH..HHSHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkeeqpdavihlAa.vggvaas..sedpadf 87 
                 +l+tGatG++G  ++ +lle gy v +  r + ++ + +             ++v  d+td+ a  +++   ++ +v+h+A  +++ + +  ++ +  +
  CCE27797.1   7 VLLTGATGMVGLRVLVRLLEYGYYVRAAVRTQAGFDRICSLPClryyggqlsRIVVPDITDKWAYYEAIL--GVKYVVHVASpISCDNFTtvAQLRDHI 103
                 699***************************97777766655559************************99..9*********99887655225678899 PP

                 HHHHTHHHHHHHHHHH.HHTCTEEEEEEE.GGGGTSCSSSS........BSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT..-EEEEEEESEEES CS
   Epimerase  88 ieknlqgtlnlleaar.kagvkrllflsS.sevYGkdaeqp........keettltgplkpnspYaaaKlageklveayaaqyg..lnaiilrlfnlyG 174
                 i+  ++gt+ +l aa+  + vkr++  +S +++  +             + ++  +g++   ++Y ++K+++   +++y +q++    +i++ + +++G
  CCE27797.1 104 IRPAVKGTVGILTAAQwSQSVKRVVITGSlVSIASEESI-AsgrmideyTWDVNMSGEITHANAYVRSKALAFAAIQDYLRQNKppYTVINILPVTIIG 201
                 ****************55599999999996666664444.1234522333334456677************************8345555666788888 PP

                 TT....S-TTS.TTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 175 pr....ngege.vsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvleh 228
                       n e++  ++  + li ++l  + + ++   g++    ++ +Dvae++++ l++
  CCE27797.1 202 RDdsliNMETDcFKGTNSLLIGSLLGMQ-NNIVTMPGNS----VHLDDVAELHVRSLDQ 255
                 8755555555544444444444444333.4444445555....6777777777766665 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   5.1e-12   1.5e-08       2     255 ..       9     276 ..       8     291 .. 0.67

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 5.1e-12
   3Beta_HSD   2 vtGgaGFlGralvkeLvrlee..lkevrv...lD.lrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag....kltedeimk 90 
                 +tG++G +G ++  +L++ +      vr    +D +   p l  +    +   ++  D+tdk    ea+ gv+ v+h+as +   +     + +d+i +
  CCE27797.1   9 LTGATGMVGLRVLVRLLEYGYyvRAAVRTqagFDrICSLPCL--RYYGGQLSRIVVPDITDKWAYYEAILGVKYVVHVASPISCDNfttvAQLRDHIIR 105
                 79***************9997534456652223433333444..333344444899***********************97765442223567999*** PP

   3Beta_HSD  91 vnvkGTrnvleacv.kagvrvlvYtSsaevvgpnslgeeilng...dE.....eleyeslhqdaypesKalaEklvlkaNgrtlknggrlyT.caLRpa 179
                   vkGT  +l a+  +++v+++v t s+  +      e i  g   dE     ++  e +h +ay +sKala +++       l++ +  yT + + p+
  CCE27797.1 106 PAVKGTVGILTAAQwSQSVKRVVITGSLVSIASE---ESIASGrmiDEytwdvNMSGEITHANAYVRSKALAFAAIQD----YLRQNKPPYTvINILPV 197
                 **********99863789******9998777663...33333322244211114556777************998864....44444444551578999 PP

   3Beta_HSD 180 giyGegdkllvpllkqlaklglalfk...igdeevls....drvYvgNvawahilAaralqdpkkkssvagqayfisddsPve 255
                 +i G  d+l+ ++   + k  ++l+    +g +++++    + v  + va  h+   r l+++  + ++ g++ fi    P+ 
  CCE27797.1 198 TIIGRDDSLI-NMETDCFKGTNSLLIgslLGMQNNIVtmpgNSVHLDDVAELHV---RSLDQNWARAHLMGHQTFIAAAGPMI 276
                 9999766655.4445555555444432225566655423335677777777775...78888888888888888888777765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1    0.0001      0.31       1      32 [.       9      38 ..       9      46 .. 0.80
   2 !   17.8   0.0   4.9e-07    0.0015      86     233 ..      76     232 ..      67     248 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0001
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SS CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRak 32
                   lTGaTG++G ++l +LL+      + + vR++
     CCE27797.1  9 LTGATGMVGLRVLVRLLEYGY--YVRAAVRTQ 38
                   8****************9876..455666655 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 4.9e-07
                    HH--EEEE--SS-S.ST.....TSSE.EHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCC CS
  NAD_binding_4  86 eevdviihsaAtvnfde.....pyke.llrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeekldederaklkglpn 174
                      v+ ++h+a  ++ d+     ++++ ++r+ v+Gt+ +l+ a+  ++    + v T + v+ ++e+ +     +  + +e + + +++ +  ++n
     CCE27797.1  76 LGVKYVVHVASPISCDNfttvaQLRDhIIRPAVKGTVGILTAAQWSQSV--KRVVITgSLVSIASEESI----ASGRMIDEYTWDVNMSGEITHAN 165
                    567888888888877764433333334899***********99955555..444555455555555444....455556788888889999999** PP

                    HHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-........-SSST---TTSHHHHHHHHHHHH-E CS
  NAD_binding_4 175 tYeqsKalaEklvrearrrsglpvvivRpsiitg........esktGwingsdlgirgllgliakgv 233
                    +Y++sKala   ++++ r+++ p +++ +  +t         + +t  ++g++ ++ g l +++ ++
     CCE27797.1 166 AYVRSKALAFAAIQDYLRQNKPPYTVINILPVTIigrddsliNMETDCFKGTNSLLIGSLLGMQNNI 232
                    *******************999998887555554447875555555555555544444444444433 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.8e-09   5.4e-06       1     142 [.      11     179 ..      11     199 .. 0.64
   2 ?   -0.1   0.0      0.24   7.2e+02     163     183 ..     235     255 ..     226     256 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.8e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH........HHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-.........--TCCHHHH. CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpekla........eleaeeglevvegdvtdvedlaealkgadaVvsal.........ggggkdeeg. 77 
                     GAtG vG +++ +ll+ g + v+a vR+++ ++        ++   +  ++v+ d+td+ +  ea+ g+  Vv  +                 + 
      CCE27797.1  11 GATGMVGLRVLVRLLEYG-YYVRAAVRTQAGFDricslpclRYYGGQLSRIVVPDITDKWAYYEAILGVKYVVHVAspiscdnftT-------Va 97 
                     9****************5.**********9888444443332224456679999****************9998885544433320.......13 PP

                     .............HHHHHHHHH.HCT--EEEEEEETTT.TSGCGCHHHHHHHHCCHHHH......HHHHHHHHHHHHSSSEEEEEE CS
  NAD_binding_10  78 .............aknivdaak.eagvkRfvlvsaigv.gdevpgefgewnkellkayl......aakraaeellrasgldwTivr 142
                                  ++ i++aa+  + vkR+v+ +++ +   e   + g    +++ +y        + ++a +++r++ l +  ++
      CCE27797.1  98 qlrdhiirpavkgTVGILTAAQwSQSVKRVVITGSLVSiASEESIASG----RMIDEYTwdvnmsGEITHANAYVRSKALAFAAIQ 179
                     3444556777778********94466*****99996541322222223....3333332222222445555556666555555544 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.24
                     ----EEEHHHHHHHHHHHCTX CS
  NAD_binding_10 163 fkggsisradVAdvlvavldd 183
                     + g+s+  +dVA++ v++ld+
      CCE27797.1 235 MPGNSVHLDDVAELHVRSLDQ 255
                     568999**********99986 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.2e-05      0.13       1     116 [.       8     121 ..       8     195 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSH. CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekP. 95 
                    L TG +G +G  ++ +Lle gy v   vr ++ f+  ri +l   +     +  +++  D+tD+ +  +++  v  + v++ A     d+  + + 
     CCE27797.1   8 LLTGATGMVGLRVLVRLLEYGYYVRAAVRTQAGFD--RICSLPCLR-YYGGQLSRIVVPDITDKWAYYEAILGV--KYVVHVASPISCDNFTTVAq 98 
                    78*************************99998866..888876544.445567789999999999999999888..68999998877766544441 PP

                    ..HHHHHHHTHHHHHHHHHHHHC CS
  GDP_Man_Dehyd  96 ..eytaevnvlGtlrLLeairal 116
                      +  ++  v Gt+ +L a++  
     CCE27797.1  99 lrDHIIRPAVKGTVGILTAAQWS 121
                    11456667777777777777644 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     8e-05      0.24       1      32 [.       7      38 ..       7      86 .. 0.80
   2 ?   -3.5   0.0       2.1   6.4e+03     203     224 ..     231     252 ..     228     256 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8e-05
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt 32
                +l +GaTG  G  v   ll+ g+ vra vR +
  CCE27797.1  7 VLLTGATGMVGLRVLVRLLEYGYYVRAAVRTQ 38
                6899**************************87 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.1
                 EEEEE-SEEE-HHHHHHHHHHH CS
        NmrA 203 kriklagntlsgneivelfekk 224
                 +++ ++gn +++++++el  + 
  CCE27797.1 231 NIVTMPGNSVHLDDVAELHVRS 252
                 6788999999999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2529.17
//
Query:       CCE27798.1  [L=216]
Description: probable heat shock protein 30 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-18   65.4   0.1    1.2e-12   47.8   0.3    2.3  2  HSP20       Hsp20/alpha crystallin family
      7e-05   22.3   0.0      0.019   14.5   0.0    2.2  2  ArsA_HSP20  HSP20-like domain found in ArsA
  ------ inclusion threshold ------
        0.1   13.0   4.8      0.079   13.4   2.5    1.8  2  Dsh_C       Segment polarity protein dishevelled (Dsh) C term


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.5e-06     0.015       1      39 [.      53      92 ..      53     102 .. 0.87
   2 !   47.8   0.3     2e-16   1.2e-12      32     101 ..     148     215 ..     128     216 .] 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.5e-06
                E--SSEEEEEEEEE-TT--CCCEEEEEETTE.EEEEEE-- CS
       HSP20  1 dikeeeeefevkldvpglkkeelkvkvednr.vlvkgehe 39
                d++e+ e++e++ ++pg++k++++++ ++ + ++++g+ e
  CCE27798.1 53 DVRETSENYELHGELPGISKNNVQIEFTEPQsLIIRGKAE 92
                67899*********************8876559****998 PP

  == domain 2  score: 47.8 bits;  conditional E-value: 2e-16
                 EEEEEE--...---TT----SS---EEEEEE--STTB-TTT-EEEEETTEEEEEEEBSS--..-------- CS
       HSP20  32 vlvkgehe.eeeedekglikerssrkFsrkftLPenvdadkvkaslkdGvLtvtvpkkepekkkkerkiqi 101
                 v  + +++ + e++ k++ +ers+++F r+f+ P  vd+d+v+as+kdGvL+v vpk +++     r+++i
  CCE27798.1 148 VERTDKKQqHSEHGVKYWLSERSVGEFARTFNFPSPVDQDSVSASFKDGVLSVIVPKAKKQ---GARRVAI 215
                 4444444446788999*****************************************9998...7788888 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0017        10       3      33 ..      60      91 ..      58     127 .. 0.87
   2 !   14.5   0.0   3.1e-06     0.019      30      61 ..     170     200 ..     169     201 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0017
  ArsA_HSP20  3 eyvlkldLPfvdkeeidlsrs.gdeLtIkign 33
                +y+l+ +LP+++k +++++ +  + L+I+ + 
  CCE27798.1 60 NYELHGELPGISKNNVQIEFTePQSLIIRGKA 91
                699999***********987735678887765 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.1e-06
  ArsA_HSP20  30 kignfrRqitLPsvlarkevtsAkfedgvLeI 61 
                 ++g f R++  Ps ++++ v sA+f+dgvL +
  CCE27798.1 170 SVGEFARTFNFPSPVDQDSV-SASFKDGVLSV 200
                 5899**************99.*********98 PP

>> Dsh_C  Segment polarity protein dishevelled (Dsh) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.23   1.4e+03      70      84 ..      29      43 ..       6      64 .. 0.70
   2 ?   13.4   2.5   1.3e-05     0.079      55     140 ..      89     173 ..      73     207 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.23
       Dsh_C 70 sqhsegsrssgsnrs 84
                s++s gs+ ++s+r+
  CCE27798.1 29 SRQSGGSQQQTSKRT 43
                444555555554444 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.3e-05
       Dsh_C  55 ayeessysygsgsagsqhsegsrssgsnrsegkakreaskeekerkaggsgsesesstrssvsrrerekaqserssaa.aserskrs 140
                 +  e sy+ g+  ags +  g +++  +  e+ ++++a+ e+++    +sg+   ++++++v+r+++++ +se++ +   sers+ +
  CCE27798.1  89 GKAERSYTSGTPPAGSIDQPGNKATITEAGEAGSSHRATVEDEK--DESSGTAVSKTNKQQVERTDKKQQHSEHGVKYwLSERSVGE 173
                 56789******************988877776665555544443..34666666667777777777777777777654257777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1619.54
//
Query:       CCE27799.1  [L=753]
Description: uncharacterized protein CPUR_01273 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.02   13.6   0.0      0.028   13.1   0.0    1.2  1  DUF3723   Protein of unknown function (DUF3723)
      0.065   12.4   0.0       0.12   11.6   0.0    1.3  1  DndB      DNA-sulfur modification-associated


Domain annotation for each model (and alignments):
>> DUF3723  Protein of unknown function (DUF3723)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.1e-06     0.028       6     111 ..      99     212 ..      95     224 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.1e-06
     DUF3723   6 penhipaviseedLeaalraaglsaeaLlessepkd.peLelesgvqlecLhGkhRlrAaeevlees.....dkwWvVdLYld.diseelrtsLv.eey 96 
                 +e+h +++ + ++ e+ l++ gl+  a   +  p+  +  + +    le L G+hR+rA ee+++++     + wW  + Y + +is e   +L+ ++ 
  CCE27799.1  99 EEHHLKVLCTGAEVERMLKELGLQDGAKQAEGMPNFsMWSDVNGPAPLELLAGQHRIRALEEWVKDAklgeeELWWPCKFYNRdSISFEQDMKLRmNKK 197
                 567777777777777777777777776666666654322334444689*************9988766776699*******874456555555541444 PP

     DUF3723  97 snekkpsDGeiyrki 111
                 + +++ s G+++ +i
  CCE27799.1 198 DVTQPDSHGDVWLHI 212
                 556666777777666 PP

>> DndB  DNA-sulfur modification-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.3e-05      0.12      34     154 ..      64     199 ..      45     207 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.3e-05
        DndB  34 vpnspelraqRklnksrvkeIakYllen......sdeyifsaltasvdeeleflpls.ssq.kekvGvlkipmdaeil......ivDGQHRraAieeal 118
                 ++  ++l+ +R l++++v++++k  +e        +e+ +  l+   + e+ + +l+ +++ k+  G+   +m ++++      ++ GQHR++A+ee +
  CCE27799.1  64 LSTTWSLGSNRLLDRRHVQKLRKAFVEFggpkrdLEEHHLKVLCTGAEVERMLKELGlQDGaKQAEGMPNFSMWSDVNgpapleLLAGQHRIRALEEWV 162
                 455688888888888888888888888655544433377777777667677777777744445444444444444444445555999***********9 PP

        DndB 119 keepelgeeei..pvvlfvelgleksqqlFadlNkyak 154
                 k+ + lgeee+  p  ++    +  +q +   +Nk  +
  CCE27799.1 163 KDAK-LGEEELwwPCKFYNRDSISFEQDMKLRMNKKDV 199
                 9888.****99998888877777777777777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5265.88
//
Query:       CCE27800.1  [L=885]
Description: probable subtilisin-like serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-42  143.3   0.0      2e-41  142.2   0.0    1.6  1  Peptidase_S8  Subtilase family
    1.2e-17   64.6   0.0    2.1e-17   63.8   0.0    1.4  1  fn3_5         Fn3-like domain
    0.00046   20.0   0.0      0.002   18.0   0.0    2.1  1  FlgD_ig       FlgD Ig-like domain
     0.0005   20.0   0.0     0.0014   18.6   0.0    1.7  1  PA            PA domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2   0.0   4.6e-45     2e-41       1     283 [.     151     570 ..     151     592 .. 0.85

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 4.6e-45
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   gkg +vav+DtG+d+shp l   + +   +       g +f+g+ ++ t+t   ++d ++ + HGthvAGi+aa+ +++ ++ g apg+++++++v+
    CCE27800.1 151 GKGLKVAVIDTGIDYSHPALGGCYGKGCLV-----SFGHDFVGDAYNGTNTPVPDEDPMDCVGHGTHVAGIVAAQ-NNSFGFTGTAPGVTLGAYRVF 241
                   89*******************777775544.....4466688888888888888888887777************.********************* PP

                   STTSB-HH..HHHHHHHHHHHHCT-SEEEE-EE.....SCETTCHHCHHHHHH......HHHHHH.CCT-EEEEE--SS-T-HH..........EEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxx..........xxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaaedkvdvinmslg.....estslpktgrsieal......ainravnkkgvlvviSaGNngktgs..........slq 173
                    +++g+ + ++ li+a+++a +d++ +i  s+g     ++  +  t+++i +        ++++    g+++ + aGN +              +  
    CCE27800.1 242 -GCLGTVT-NDVLIAAFNRAYQDGANLITASIGgpggwAGEPWAVTVSRIVDKgvpcvlPADNGG-TVGIFYASTAGNGQHVSAiasfdnvqphH-- 333
                   .9999985.5***********************88766555566555555544899887777777.6799********99333344344444442.. PP

                   -TTCEECTTTSTTCEEEEEES............................................................................ CS
                   xxxxxxxxxxxxxxxxxxxxx............................................................................ RF
  Peptidase_S8 174 agspvgtpstsknvitvgayt............................................................................ 194
                                +++ + y+                                                                            
    CCE27800.1 334 -------------ILSLSKYQiddgpeqsfayegtqvsnwtgvnlpawassldptikndacdplpantpdlsnfivlirhgtctdlekiqnaiakga 417
                   .............4444444444444444444444455555777777999999999999999*********************************** PP

                   ......................................................................TTSSB-TT--B-TT.......-EEEE- CS
                   ......................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 ......................................................................tegkiapfSsrGpssdgklkpdivapG 221
                                                                                         + g ++ fSs Gp+++   kp+  a G
    CCE27800.1 418 kyvlvynnapgtieidlgsfpptnvtavsmvddktgetfikalkdgkkltlkmiasntaeqlvrigndtvSGGAVSAFSSWGPTFEMDTKPQYGAIG 514
                   ************************************************************************************************* PP

                   S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-E CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 222 gnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqd 283
                   gn++st +r         sy  msGTSmA+P+aag++Al+++   +++p++++++l  + ++
    CCE27800.1 515 GNVLSTFPRAL------GSYAIMSGTSMACPHAAGIVALIREVRGAISPQEIQDLLSSNSNP 570
                   **999999888......339***********************************9888765 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   4.7e-21   2.1e-17       2     114 ..     612     724 ..     611     725 .. 0.87

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 4.7e-21
       fn3_5   2 aLkeigdk.fsftltlkNtsnkaltykvsandvlTdladkeegklilkaaspeike...aaltfetskvtvpAnssktvtvtldlpsdakkkngyfveG 96 
                 ++++++ + +s ++tl+Nt+++++ty++++ ++ T +a +++  +i+   +p+ +    a+l+f++ ++t++ +++kt++v +++p+d+++k+  +++G
  CCE27800.1 612 SFNDTDYFaKSLNFTLRNTDKEPATYNITHMPAITMYALAKDSIYIQ--GFPNEAVhaaATLKFSETSITLGGGETKTIEVSATPPDDLDAKRLALWSG 708
                 68888777799**************************9666555554..4443332447**************************************** PP

       fn3_5  97 fvtlkdsedknpelsvPY 114
                 ++t++++++   +ls+PY
  CCE27800.1 709 YITINGTDGA--SLSLPY 724
                 **********..****** PP

>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.4e-07     0.002      51      75 ..     835     859 ..     832     862 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.4e-07
                 EEEE-SB-TTS-B--SEEEEEEEEE CS
     FlgD_ig  51 sftWdGtdndGnkladGaYtvkvta 75 
                  f WdG  ++G+++++G+Y++ v a
  CCE27800.1 835 GFPWDGLLDSGSYAPAGTYNFVVRA 859
                 589*******************987 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.1e-07    0.0014      21      58 ..     388     431 ..     365     456 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.1e-07
          PA  21 gvdvkGkivLvqr....tfaeKarnAqaaGAagviivndge...l 58 
                 + d+++ ivL+ r    t  eK++nA a+GA+ v+++n+ +   +
  CCE27800.1 388 TPDLSNFIVLI-RhgtcTDLEKIQNAIAKGAKYVLVYNNAPgtiE 431
                 5689999****.5577777******************76543331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 5776.88
//
Query:       CCE27801.1  [L=885]
Description: probable subtilisin-like serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-44  150.2   0.0    1.6e-43  149.1   0.0    1.5  1  Peptidase_S8  Subtilase family
    5.6e-17   62.5   0.1    9.1e-17   61.8   0.1    1.4  1  fn3_5         Fn3-like domain
    4.6e-05   23.4   0.1    0.00023   21.1   0.0    2.2  2  PA            PA domain
    0.00019   21.2   0.0    0.00066   19.5   0.0    1.9  1  FlgD_ig       FlgD Ig-like domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.1   0.0   3.5e-47   1.6e-43       1     282 [.     151     569 ..     151     582 .. 0.90

  Alignments for each domain:
  == domain 1  score: 149.1 bits;  conditional E-value: 3.5e-47
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   gkg++vav+DtG+d+ hp l   + +   +       g +f+g+ ++ t+t   ++d ++   HGthvAGi+aa+ +++ e+ g apg+++++++v+
    CCE27801.1 151 GKGIKVAVVDTGIDYLHPALGGCYGKGCLVS-----FGHDFVGDAYNGTNTAVPDEDPMDCQGHGTHVAGIVAAQ-NNSLEFTGTAPGVSLGAYRVF 241
                   89*******************8777755553.....344566666666666666666665555************.********************* PP

                   STTSB-HH..HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTST..TCEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaaedkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsk..nvitvga 192
                   + +g +++  + li+a+++a +d++ +i  s+g+++ +     ++ a+++ r v +kgv  v +aGN+g       a+  +++ s ++   v ++++
    CCE27801.1 242 GCRGDAAN--DVLIAAFNKAYQDGANIITASIGGPSGWA---GDPWAVVVSRIV-DKGVPCVLAAGNSG-------ALGIFYASSAANgqHVSAIAS 325
                   99998885..9**********************555554...3444459*****.99************.......555566666555556666777 PP

                   ES............................................................................................... CS
                   xx............................................................................................... RF
  Peptidase_S8 193 yt............................................................................................... 194
                   ++                                                                                               
    CCE27801.1 326 FDnvqppyflseskyqvddgpeqsfgyerseisnwdgvnlpawassldptikndacdpfptntpdlskfivlirrgtcpfveklqnaiakgakyvli 422
                   7788888899999999********************************************************************************* PP

                   .................................................................TTSSB-TT--B-TT.......-EEEE-S-CCC CS
                   .................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 .................................................................tegkiapfSsrGpssdgklkpdivapGgnivs 226
                                                                                    + g ++ fSs Gp+++   kp+  a Gg+++s
    CCE27801.1 423 yndapgtfgidlgpispaavtavsmvddktgetfikalkdgkkltfkmvgpdtaerlvrtdndtvSGGAVSAFSSWGPTFEMDTKPQYGAIGGHVLS 519
                   ************************************************************************************************* PP

                   CCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS- CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 227 twsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAq 282
                   t++r+        sy s sGTSmA+P aag++Al+++   ++tp++++++l  + +
    CCE27801.1 520 TYPRDL------GSYASLSGTSMACPQAAGIIALIREVRGAITPQEIQDLLSSNSN 569
                   ****99......339***********************************988775 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.1     2e-20   9.1e-17       2     114 ..     612     724 ..     611     725 .. 0.88

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 2e-20
       fn3_5   2 aLkeigdk.fsftltlkNtsnkaltykvsandvlTdladkeegklilkaaspeike...aaltfetskvtvpAnssktvtvtldlpsdakkkngyfveG 96 
                 ++++++ + +s ++tl+Nt+++++ty++++ ++ T ++ +++  +++     +      a+l+f++ ++t+  +++k ++v +++p+++++k+  +++G
  CCE27801.1 612 SFNDTDYFaKSLNFTLRNTDKEPATYNITHMPAITVYTLANDSIYVQRFPNEA--VhaaATLKFSETSITLSGGETKSIEVSATPPEGLDAKRLALWSG 708
                 68888777799*************************99766666554444433..3458**************************************** PP

       fn3_5  97 fvtlkdsedknpelsvPY 114
                 ++t++++++   +ls+PY
  CCE27801.1 709 YITINGTDGA--SLSLPY 724
                 **********..****** PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.2   5.4e+03      39      56 ..     297     314 ..     282     333 .. 0.68
   2 !   21.1   0.0   5.1e-08   0.00023      21      57 ..     388     427 ..     368     456 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
          PA  39 arnAqaaGAagviivndg 56 
                 + +A + GA g+ +++  
  CCE27801.1 297 VLAAGNSGALGIFYASSA 314
                 567889999998877533 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 5.1e-08
          PA  21 gvdvkGkivLvqr...tfaeKarnAqaaGAagviivndge 57 
                 + d++  ivL++r    f+eK +nA a+GA+ v+i+nd +
  CCE27801.1 388 TPDLSKFIVLIRRgtcPFVEKLQNAIAKGAKYVLIYNDAP 427
                 4578888****9999999******************8654 PP

>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.5e-07   0.00066      51      75 ..     835     859 ..     832     862 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.5e-07
                 EEEE-SB-TTS-B--SEEEEEEEEE CS
     FlgD_ig  51 sftWdGtdndGnkladGaYtvkvta 75 
                  f WdG+ ++G+++++G+Y++ v a
  CCE27801.1 835 GFPWDGRLDSGSYAPAGTYNFVVRA 859
                 589*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 6153.61
//
Query:       CCE27802.1  [L=890]
Description: probable subtilisin-like serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-44  149.8   0.0    1.8e-43  148.9   0.0    1.4  1  Peptidase_S8  Subtilase family
    6.1e-18   65.6   0.3    2.1e-17   63.8   0.0    1.9  2  fn3_5         Fn3-like domain
    9.9e-06   25.5   0.0    2.5e-05   24.2   0.0    1.7  1  PA            PA domain
    6.1e-05   22.8   0.0    0.00022   21.1   0.0    1.9  1  FlgD_ig       FlgD Ig-like domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.9   0.0   3.9e-47   1.8e-43       1     284 [.     154     577 ..     154     598 .. 0.90

  Alignments for each domain:
  == domain 1  score: 148.9 bits;  conditional E-value: 3.9e-47
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   gkg++vav+D+G+d+ hp l   + ++  + +  d  g    ++ +++  +++  d +g    HGthvAGi+aa+ +++ ++ g apg+++++++vl
    CCE27802.1 154 GKGIKVAVVDSGIDYLHPALGGCYGKDCLVSFGHDFVGD-AYDGINTPVPDEDPMDCKG----HGTHVAGIIAAQ-NNSFGFTGTAPGVSLGAYRVL 244
                   89*******************888887766555555443.6666666666666666666....************.********************* PP

                   STTSB-HH..HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HH....EEE-TTCEECTTTST..... CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxx..... RF
  Peptidase_S8  98 dtsggsmetgteliraieeaaedkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgs....slqagspvgtpstsk..... 185
                   + +gg+ +  + li+a+++a +d++ +i  sl      + ++ ++ a a+ r v +kgv  v +aGN+g+ g     ++ +g+ v++ ++++     
    CCE27802.1 245 GCDGGAGN--DVLIAAFNKAYQDGANIITASLA---APNGWVGDPFAGAVSRIV-DKGVSCVLAAGNEGEVGIfyasTAANGQHVSAIASFDnvqpp 335
                   99998885..9**********************...4455555566559*****.99************7777777666666666666666533333 PP

                   TCEEEEEES........................................................................................ CS
                   xxxxxxxxx........................................................................................ RF
  Peptidase_S8 186 nvitvgayt........................................................................................ 194
                     + v+ y+                                                                                        
    CCE27802.1 336 YFLHVSKYQidndpeqsfgydrslmpgwdgvnlpawansldstikndacdtfpantpdlsnfivlirrgtcnftekiqnamnkgaryallynnapgt 432
                   558888888**************************************************************************************** PP

                   .............................................................TTSSB-TT--B-TT.......-EEEE-S-CCCCCCC CS
                   .............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 .............................................................tegkiapfSsrGpssdgklkpdivapGgnivstwsr 230
                                                                                t g +++fS+ Gp+++ + kp+  a Gg+++st++r
    CCE27802.1 433 feadvdlevltplsaitavstidnetgeafikalkeskkltlkmvgpeksdlwvrttnntnTGGAVSTFSNWGPTFEMETKPQYGAIGGDVLSTYPR 529
                   ************************************************************************************************* PP

                   CCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-EE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 231 qsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqdl 284
                    +       sy   sGTSmA+P+aag++Al+++   ++ pe+++ +l  +A++ 
    CCE27802.1 530 AK------GSYAVLSGTSMACPHAAGIVALIREIRGAIAPEEIENLLSSNANPQ 577
                   **......3399*************************************99765 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.74   3.3e+03      11      80 ..     407     476 ..     403     498 .. 0.63
   2 !   63.8   0.0   4.8e-21   2.1e-17       2     114 ..     618     730 ..     617     731 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.74
       fn3_5  11 sftltlkNtsnkaltykvsan.dvlTdladkeegklilkaaspeikeaaltfetskvtvpA.nssktvtvtl 80 
                 +ft +++N  nk + y++  n    T +ad  + ++ ++  ++++  ++++ et++  ++A ++sk++t+++
  CCE27802.1 407 NFTEKIQNAMNKGARYALLYNnAPGTFEAD-VDLEVLTPLSAITA-VSTIDNETGEAFIKAlKESKKLTLKM 476
                 577788888888888888777566666664.34443333333332.36777777777777745566666665 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 4.8e-21
       fn3_5   2 aLkeigdk.fsftltlkNtsnkaltykvsandvlTdladkeegklilkaaspeike...aaltfetskvtvpAnssktvtvtldlpsdakkkngyfveG 96 
                 ++++++++ +s ++tl+Nt+++++ yk+++ ++ T ++    +  i  +++p+ +    a ++f++ ++t++ +++kt++v +++p+d++ k+  +++G
  CCE27802.1 618 SFNDTDHFtKSLNFTLRNTDKEPARYKITHRPAITMYT--LAKDSIYVQIFPNEAVhaaARIQFSETSITLRGGETKTIEVSATAPEDLDPKRLALWSG 714
                 7999988879***************************9..5555566788887655789**************************************** PP

       fn3_5  97 fvtlkdsedknpelsvPY 114
                 ++ +++s++   +ls+PY
  CCE27802.1 715 YIAINGSDGA--SLSLPY 730
                 **********..****** PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   5.7e-09   2.5e-05      20      71 ..     388     444 ..     368     462 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 5.7e-09
          PA  20 e..gvdvkGkivLvqr...tfaeKarnAqaaGAagviivndgelgaatgasgnegep 71 
                    + d+++ ivL++r   +f+eK++nA ++GA  ++++n+ ++  + + + +   p
  CCE27802.1 388 PanTPDLSNFIVLIRRgtcNFTEKIQNAMNKGARYALLYNNAPGTFEADVDLEVLTP 444
                 04456999******99***********************876633333333444444 PP

>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   4.8e-08   0.00022      46      75 ..     835     864 ..     827     866 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 4.8e-08
                 SSEEEEEEE-SB-TTS-B--SEEEEEEEEE CS
     FlgD_ig  46 saGvvsftWdGtdndGnkladGaYtvkvta 75 
                 + G + f WdG  ++G ++++G+Y++ v a
  CCE27802.1 835 PRGHNGFPWDGLLDSGRYAPAGTYKFVVRA 864
                 7899***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5998.16
//
Query:       CCE27803.1  [L=880]
Description: probable subtilisin-like serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-42  145.9   0.9    2.3e-42  145.3   0.9    1.3  1  Peptidase_S8  Subtilase family
    1.1e-14   55.1   0.0    1.7e-14   54.4   0.0    1.3  1  fn3_5         Fn3-like domain
    7.5e-06   25.7   0.0    2.4e-05   24.1   0.0    1.9  1  FlgD_ig       FlgD Ig-like domain
     0.0012   18.8   0.0     0.0035   17.3   0.0    1.8  1  PA            PA domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.9   5.1e-46   2.3e-42       1     284 [.     154     575 ..     154     596 .. 0.88

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 5.1e-46
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   gkg++vav+D+G+d+ hp l   + +   + +     g +f+g+ ++ t+t    ++ ++ + HGthvAGi+aa+ +++ ++ g apg++++++++ 
    CCE27803.1 154 GKGIKVAVIDSGIDYLHPALGGCYGKGCLVSF-----GHDFVGDAYTGTNTPVPGENPMDCLGHGTHVAGIIAAQ-NNSFGFTGTAPGVSLGAYRAW 244
                   89*******************88777655543.....34455555555555555555555555************.********************* PP

                   STTSB-HH..HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HH.........EEE-TTCEECTTTST CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaaedkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgs.........slqagspvgtpstsk 185
                   +  ggs +  + li+a+++a +d++d+i  slg+++    ++ ++ a+a+ r v +kgv  v++ GN+gk g          +  +     + +++ 
    CCE27803.1 245 GCVGGSGN--DVLIAAFNKAYQDGADIITASLGGPSG---WVGDPLAVAVSRIV-DKGVPCVVAIGNSGKMGIfyaaspangQHVSAIASFDSAQAP 335
                   88887775..9**********************4443...444444569*****.99************7777777766643222233333355566 PP

                   TCEEEEEES........................................................................................ CS
                   xxxxxxxxx........................................................................................ RF
  Peptidase_S8 186 nvitvgayt........................................................................................ 194
                     + v+ y+                                                                                        
    CCE27803.1 336 YFLIVSKYQidngpeqsfghrhtrlrnwynvnlpawassldptikndacapfpantpdlskfivlirrgtcdlsdkiqhaidkgakyvliyndapgt 432
                   888888888**************************************************************************************** PP

                   ...........................................................TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCC CS
                   ...........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 ...........................................................tegkiapfSsrGpssdgklkpdivapGgnivstwsrqs 232
                                                                              t g +++ Ss Gp+++   kp+  a Gg ++st++r +
    CCE27803.1 433 seidlgpiglgavtavsmiddktgetfikalkdgkkltlkmvgpdsnveqwvgtddntnTGGAVSTLSSWGPTFEMDTKPQYGAIGGYVLSTYPRSA 529
                   ************************************************************************************************* PP

                   HHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-EE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 233 nnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqdl 284
                          sy  +sGTSmA+P aag++Al+++   ++tp++++++l  +A++ 
    CCE27803.1 530 ------GSYAIFSGTSMACPQAAGIIALIRQVRGAITPQQIQDLLSSNANPQ 575
                   ......339***************************************9775 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   3.9e-18   1.7e-14       2     114 ..     616     728 ..     615     729 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 3.9e-18
       fn3_5   2 aLkeigdk.fsftltlkNtsnkaltykvsandvlTdladkeegklilkaaspeike...aaltfetskvtvpAnssktvtvtldlpsdakkkngyfveG 96 
                 ++++++++ +s ++tl+Nt++ ++ y++++ ++ T +     ++ i  + +p+      a+l+f++  +t++ +++kt++v +++p+++++k+  +++G
  CCE27803.1 616 SFNDTAHFtKSLNFTLRNTDKGREKYRITHIPAITMYI--LGKNSIYVQPFPNEVVhaaATLKFSETIFTLRGGETKTIEVSATAPEGLDAKRLALWSG 712
                 7899977779***************************9..4555555666665333668**************************************** PP

       fn3_5  97 fvtlkdsedknpelsvPY 114
                 ++ +++se+   +ls+PY
  CCE27803.1 713 YIAINGSEGA--SLSLPY 728
                 **********..****** PP

>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   5.4e-09   2.4e-05      46      75 ..     825     854 ..     821     857 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 5.4e-09
                 SSEEEEEEE-SB-TTS-B--SEEEEEEEEE CS
     FlgD_ig  46 saGvvsftWdGtdndGnkladGaYtvkvta 75 
                 + G+ +f WdG  ++G+++++G+Y++ v a
  CCE27803.1 825 PRGQKDFHWDGLLDSGSYAPAGTYKFVVRA 854
                 679************************987 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.8e-07    0.0035      21      58 ..     391     431 ..     370     458 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.8e-07
          PA  21 gvdvkGkivLvqr...tfaeKarnAqaaGAagviivndgel 58 
                 + d++  ivL++r   +  +K+++A ++GA+ v+i+nd ++
  CCE27803.1 391 TPDLSKFIVLIRRgtcDLSDKIQHAIDKGAKYVLIYNDAPG 431
                 4588889****8887777******************96541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (880 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 6170.93
//
Query:       CCE27804.1  [L=887]
Description: probable subtilisin-like serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-44  150.9   0.0    1.9e-43  148.8   0.0    1.8  1  Peptidase_S8  Subtilase family
    5.3e-18   65.8   0.2    8.8e-18   65.1   0.2    1.4  1  fn3_5         Fn3-like domain
    3.3e-05   23.7   0.0    0.00015   21.5   0.0    2.2  1  FlgD_ig       FlgD Ig-like domain
    5.1e-05   23.2   0.0    0.00016   21.6   0.0    1.9  1  PA            PA domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   0.0   4.3e-47   1.9e-43       1     283 [.     154     573 ..     154     585 .. 0.88

  Alignments for each domain:
  == domain 1  score: 148.8 bits;  conditional E-value: 4.3e-47
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   gkg++vav+DtG+d+ hp l   + +   + +     g +f+g+ ++ t+t   ++d ++   HGthvAGi+aa+ +++ ++ g apg+++++++v+
    CCE27804.1 154 GKGIKVAVVDTGIDYLHPALGGCFGKGCLVSF-----GHDFVGDAYNGTNTPVPDEDPMDCKGHGTHVAGIVAAQ-NNSFGFTGTAPGVSLGAYRVI 244
                   89*******************87777555543.....44455555555555555555554444************.********************* PP

                   STTSB-HH..HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HH....EEE-TTCEECTTTSTTCEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaaedkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgs....slqagspvgtpstsknvitv 190
                   + +gg+ +  + li+a+++a +d++d+i  slg+++ + + + +    a+ r v +kgv  v+SaGN+g+ g      + +g+ v++ ++++ v  +
    CCE27804.1 245 GCDGGAGN--DVLIAAFNKAYQDGADIITASLGGPSGWAE-DPWAD--AVSRIV-DKGVPCVVSAGNEGEMGLffasAAANGQHVSAIASFD-VAQI 334
                   99998885..9**********************6655554.44655..******.99************66667554444455555544444.5555 PP

                   EEES............................................................................................. CS
                   xxxx............................................................................................. RF
  Peptidase_S8 191 gayt............................................................................................. 194
                   ++                                                                                               
    CCE27804.1 335 SSLLssskyqiddgpeqsfgyassgisdwdgvnlpawassldptikndacdplpantpdlskfvvlirrgtceftekirnavakgakyvllynnapg 431
                   5555888888*************************************************************************************** PP

                   ...........................................................TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCC CS
                   ...........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 ...........................................................tegkiapfSsrGpssdgklkpdivapGgnivstwsrqs 232
                                                                              t g ++ fS+ Gp+++   kp+  a Gg+++st+ r++
    CCE27804.1 432 afdfiigpitsgnvtavsmiddetgktlikalkdgkkvtlkmlgpknsgpwiqtvkntdTGGAVSAFSTWGPTFEMDTKPQYGALGGQVLSTYLRDK 528
                   ************************************************************************************************* PP

                   HHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-E CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 233 nnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqd 283
                        +  y  +sGTSm++P aag++Al+++   ++ p++++++l  +A++
    CCE27804.1 529 -----G-MYAVFSGTSMSCPQAAGIIALIREVRGAIAPQEIQDLLSSNANP 573
                   .....2.299*************************************9976 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.2     2e-21   8.8e-18       2     114 ..     615     727 ..     614     728 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 2e-21
       fn3_5   2 aLkeigdk.fsftltlkNtsnkaltykvsandvlTdladkeegklilkaaspeike...aaltfetskvtvpAnssktvtvtldlpsdakkkngyfveG 96 
                 ++++++++ +s ++t++Nt+++++ty++++ ++ T ++ +++  +   +++p+      a+l++++ ++t++ +++kt++v +++p+++++k+  +++G
  CCE27804.1 615 SFNDTDQFaKSLNFTVRNTNKEPATYNITHMPAITMYTLTNDSIY--VQIFPNEVVhaaATLKLSETSITLRGGETKTIEVSATPPEGLDAKRLALWSG 711
                 789998888****************************97666655..466665333668**************************************** PP

       fn3_5  97 fvtlkdsedknpelsvPY 114
                 ++t++++++   +ls+PY
  CCE27804.1 712 YITINGTDGA--SLSLPY 727
                 **********..****** PP

>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.4e-08   0.00015      46      75 ..     832     861 ..     824     863 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.4e-08
                 SSEEEEEEE-SB-TTS-B--SEEEEEEEEE CS
     FlgD_ig  46 saGvvsftWdGtdndGnkladGaYtvkvta 75 
                 + G + f WdG  ++G+++++G+Y++ v a
  CCE27804.1 832 PRGHNGFPWDGLLDSGSYAPAGTYNFVVHA 861
                 67999**********************987 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.6e-08   0.00016      21      57 ..     391     430 ..     369     459 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3.6e-08
          PA  21 gvdvkGkivLvqr...tfaeKarnAqaaGAagviivndge 57 
                 + d++  +vL++r   +f+eK+rnA a+GA+ v+++n+ +
  CCE27804.1 391 TPDLSKFVVLIRRgtcEFTEKIRNAVAKGAKYVLLYNNAP 430
                 45778889***99*9*********************8654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 5971.39
//
Query:       CCE27805.1  [L=178]
Description: uncharacterized protein CPUR_01279 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.034   14.2   0.1      0.051   13.7   0.1    1.2  1  VHP       Villin headpiece domain


Domain annotation for each model (and alignments):
>> VHP  Villin headpiece domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   2.8e-06     0.051       5      24 ..      70      89 ..      68      92 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-06
         VHP  5 edFeevFgmtreeFykLPkW 24
                  F  +F  +r+eF+ L kW
  CCE27805.1 70 TVFANLFRLSRTEFDLLSKW 89
                5699**************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1280.67
//
Query:       CCE27806.1  [L=365]
Description: uncharacterized protein CPUR_01280 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-13   49.7   0.1    5.5e-13   48.9   0.1    1.4  1  Epimerase       NAD dependent epimerase/dehydratase family
    2.1e-09   36.8   0.0    2.8e-09   36.4   0.0    1.2  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    1.2e-07   31.8   0.1    1.2e-06   28.5   0.0    2.1  2  NAD_binding_10  NAD(P)H-binding
    1.7e-05   24.1   0.6    0.00025   20.3   0.6    2.1  1  NAD_binding_4   Male sterility protein
     0.0013   18.2   0.0     0.0048   16.3   0.0    1.8  2  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
     0.0068   16.0   0.0      0.015   14.9   0.0    1.6  1  NmrA            NmrA-like family
  ------ inclusion threshold ------
      0.024   13.8   0.0       0.87    8.6   0.0    2.2  2  RmlD_sub_bind   RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.1   2.1e-16   5.5e-13       1     231 [.       7     259 ..       7     268 .. 0.80

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2.1e-16
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HHHHHH..SHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkeeqpdavihlAa.vggvaasse..dpadf 87 
                 +l+tGatG++G  ++ +lle gy v +  r + ++ + r   +         ++v  ++t++ a  ++++  ++  v+h+A  +++++ +se  + + +
  CCE27806.1   7 VLLTGATGMVGFRILVRLLESGYYVRAAVRTQAGFDRIRALPTvhkyanqlsSIVVPEITQPLAYFEAIR--GAKFVVHVASpISCPNLTSEgdYHEHI 103
                 699************************99997777666555559*****999999999999999999999..9*************998876337899* PP

                 HHHHTHHHHHHHHHHHHH.TCTEEEEEEE.GGGGTSCSS.SS...BSTCSTTS--....--SSHHHHHHHHHHHHHHHHHHHH..T-EEEEEEESEEES CS
   Epimerase  88 ieknlqgtlnlleaarka.gvkrllflsS.sevYGkdae.qp...keettltgpl....kpnspYaaaKlageklveayaaqy..glnaiilrlfnlyG 174
                 i+  +qgt+nlleaa+ a  vkr++  +S  ++  ++++ +     +e+tl+  l    +++++Y ++K+++   ++ + a+    + + ++ +  + G
  CCE27806.1 104 IRPAMQGTTNLLEAAHCAkSVKRVVITGSlMSIVSNKKRlTSgvlIDENTLDVDLngsiNQSNAYIRSKALAFASIRIFMAEKrpRFTVANILPVLILG 202
                 ****************655999*******989999888862245655555444444444********************99994345555666777777 PP

                 TTS-TTSTTSHHHHHHHHHHTTSSSEEEETTST-EE.EEEEHHHHHHHHHHHHHHHTT CS
   Epimerase 175 prngegevsrvipalirkilegkqevtllgdgtalR.dflyveDvaeaillvlehvda 231
                   +  ++++ + ++ ++++l+g   + + +d  a +   ++ +Dvae+++++l+++ +
  CCE27806.1 203 RDDEFTNMTTIRFKGANSLLLGP-LLGIHNDIAAMMgNSVHLDDVAELHVRALDAPLT 259
                 77666668888888999999988.5555556555553569999999999999998655 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   1.1e-12   2.8e-09       2     195 ..       9     214 ..       8     269 .. 0.65

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.1e-12
   3Beta_HSD   2 vtGgaGFlGralvkeLvrlee..lkevrvlD....lrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag....kltedeimk 90 
                 +tG++G +G ++  +L++ +      vr       +r  p++++ ++++   +++   +t+     ea++g++ v+h+as +   +     +++++i +
  CCE27806.1   9 LTGATGMVGFRILVRLLESGYyvRAAVRTQAgfdrIRALPTVHKYANQLS--SIVVPEITQPLAYFEAIRGAKFVVHVASPISCPNltseGDYHEHIIR 105
                 79****************99754456776434447777777744444444..46999**********************97765441112456667888 PP

   3Beta_HSD  91 vnvkGTrnvleacvka.gvrvlvYtSsaevvgpnslgeeilng...dEeleyesl.....hqdaypesKalaEklvlkaNgrtlkngg.rlyTcaLRpa 179
                   ++GT n+lea+ +a +v+++v t s+  +  n+  + ++ g   dE++    l      ++ay +sKala + +         +   r+    + p+
  CCE27806.1 106 PAMQGTTNLLEAAHCAkSVKRVVITGSLMSIVSNK--KRLTSGvliDENTLDVDLngsinQSNAYIRSKALAFASIRIFM----AEKRpRFTVANILPV 198
                 899*********98753899999997765555543..3333332226765432222334488999999999977664322....222326666667777 PP

   3Beta_HSD 180 giyGegdkllvpllkq 195
                  i G  d+++  +  +
  CCE27806.1 199 LILGRDDEFTNMTTIR 214
                 7777777666655555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   4.7e-10   1.2e-06       1     107 [.      11     141 ..      11     212 .. 0.70
   2 ?    1.1   0.0      0.13   3.3e+02     163     184 .]     236     257 ..     226     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 4.7e-10
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH........CTTTCEEEE--TT-CCHHHHHHTT-SEEEES-.........--TCC..... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele........aeeglevvegdvtdvedlaealkgadaVvsal.........ggggk..... 73 
                     GAtG vG +++ +ll++ g+ v+a vR+++ +++++        a++  ++v+ ++t++ +  ea++ga  Vv  +         + +g+     
      CCE27806.1  11 GATGMVGFRILVRLLES-GYYVRAAVRTQAGFDRIRalptvhkyANQLSSIVVPEITQPLAYFEAIRGAKFVVHVAspiscpnltS-EGDyhehi 103
                     9****************.5*********98777544222443434455568889****************9988886887777642.22233444 PP

                     ...HHHHHHHHHHHHH.HCT--EEEEEEETTTTSGCGC CS
  NAD_binding_10  74 ...deegaknivdaak.eagvkRfvlvsaigvgdevpg 107
                          +g+ n+++aa  ++ vkR+v+ +++ +  + ++
      CCE27806.1 104 irpAMQGTTNLLEAAHcAKSVKRVVITGSLMSIVSNKK 141
                     4444444******9983566******999765433333 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.13
                     ----EEEHHHHHHHHHHHCTXG CS
  NAD_binding_10 163 fkggsisradVAdvlvavlddp 184
                     + g+s+  +dVA++ v++ld p
      CCE27806.1 236 MMGNSVHLDDVAELHVRALDAP 257
                     67899*************9976 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.6   9.7e-08   0.00025       1     188 [.       9     180 ..       9     223 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 9.7e-08
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    lTGaTG++G ++l +LL++     + + vR++   ++ +R+++  + ++  ++l+       ++v+ ++++p       ++ e ++  + ++h+a 
     CCE27806.1   9 LTGATGMVGFRILVRLLESGY--YVRAAVRTQ---AGFDRIRALPTVHKYANQLS-------SIVVPEITQPL------AYFEAIRGAKFVVHVAS 86 
                    8******************98..688888888...55999976666677766664.......89999999997......56666688888999888 PP

                    S-S......STTSSE.EHHHHHHHHHHHHHHHTSSS--.-EEEEEE..GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHH CS
  NAD_binding_4  97 tvnf.....depyke.llrvNveGtrevlelakklkklkvllhvST..ayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaE 184
                     ++      +++y+e ++r+ ++Gt ++le a+  k+ k ++   +  ++v+++++  ++  v+     +e + + +++ + + +n+Y +sKala 
     CCE27806.1  87 PISCpnltsEGDYHEhIIRPAMQGTTNLLEAAHCAKSVKRVVITGSlmSIVSNKKR--LTSGVL----IDENTLDVDLNGSINQSNAYIRSKALAF 176
                    775411111568877799*************9966666666666665655555555..333444....46788889999999999********996 PP

                    HHHH CS
  NAD_binding_4 185 klvr 188
                      +r
     CCE27806.1 177 ASIR 180
                    6555 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.9e-06    0.0048       1     123 [.       8     126 ..       8     133 .. 0.81
   2 ?   -1.3   0.0      0.43   1.1e+03     299     323 ..     301     324 ..     293     331 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.9e-06
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSH. CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekP. 95 
                    L TG +G +G  ++ +Lle gy v   vr ++ f+  ri++l +  ++ +++  +++  ++t   +  ++++ ++   v++ A     ++  ++  
     CCE27806.1   8 LLTGATGMVGFRILVRLLESGYYVRAAVRTQAGFD--RIRALPTV-HKYANQLSSIVVPEITQPLAYFEAIRGAK--FVVHVASPISCPNLTSEGd 98 
                    78*************************99998866..99999865.4566778899999************9995..69*****987777666551 PP

                    ..HHHHHHHTHHHHHHHHHHHHCT..TTSE CS
  GDP_Man_Dehyd  96 ..eytaevnvlGtlrLLeairalglekkvr 123
                      e  ++  + Gt++LLea+  ++  k  r
     CCE27806.1  99 yhEHIIRPAMQGTTNLLEAAHCAKSVK--R 126
                    1156788899*********98765433..3 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.43
                    -SS--SB--B-THHHHHHH----SS CS
  GDP_Man_Dehyd 299 rpgevdlllgdaskakeeLgWkpkv 323
                    rp+    l  d+skak+ Lg + k+
     CCE27806.1 301 RPTT-SVLNVDNSKAKRLLGREFKT 324
                    6653.57889*********977764 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.8e-06     0.015       1      98 [.       7     128 ..       7     145 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.8e-06
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S.......-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG................S CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdt.......kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy................s 76 
                 +l +GaTG  G  +   ll++g+ vra vR +          ++++ +++   +v  ++ +     ea++g++ v  v +                  +
  CCE27806.1   7 VLLTGATGMVGFRILVRLLESGYYVRAAVRTQagfdrirALPTVHKYANQLSSIVVPEITQPLAYFEAIRGAKFVVHVASPIscpnltsegdyhehiiR 105
                 6899***************************99999888777788888888888888888888888888888887776654456666677777655555 PP

                 -HHHHHHHHHHHHHHHS.-SEEE CS
        NmrA  77 keiedgkklvdAakeaG.vkhfi 98 
                   ++  ++l +Aa  a+ vk+++
  CCE27806.1 106 PAMQGTTNLLEAAHCAKsVKRVV 128
                 55556667777777777777766 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00034      0.87       3      46 ..       7      50 ..       5      66 .. 0.83
   2 ?    3.0   0.0     0.017        44     251     285 ..     300     336 ..     244     338 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00034
                   EEEESTTSHHHHHHHHHCTTTSEEEEEE-TTT--TTSHHHHHHH CS
  RmlD_sub_bind  3 ilvtGanGqlGseLakqlaeeglevlaltreeldltdaeavael 46
                   +l+tGa+G++G  +  +l e+g+ v a  r+++ +++  a+ ++
     CCE27806.1  7 VLLTGATGMVGFRILVRLLESGYYVRAAVRTQAGFDRIRALPTV 50
                   79**************************9999988777766554 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.017
                    ---SBE-B..--HHHHHCCT----BHHHHHHHHHHHH CS
  RmlD_sub_bind 251 kRPanSvL..dtekleatfgiklrewrealkevlkel 285
                     RP  SvL  d++k+++  g + ++++e++ +v++++
     CCE27806.1 300 VRPTTSVLnvDNSKAKRLLGREFKTFEEQVVSVVEQY 336
                    69****994457788999999***********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2602.58
//
Query:       CCE27807.1  [L=346]
Description: uncharacterized protein CPUR_01281 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-11   42.7   0.0    6.2e-11   42.2   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.1e-06   27.9   0.1    1.8e-06   27.2   0.1    1.4  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    1.5e-06   28.2   0.1    2.6e-05   24.2   0.1    2.1  2  NAD_binding_10   NAD(P)H-binding
    4.7e-05   22.7   0.0       0.25   10.4   0.0    2.1  2  NAD_binding_4    Male sterility protein
    0.00023   20.6   0.0     0.0007   19.1   0.0    1.8  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
      0.044   12.9   0.0      0.073   12.2   0.0    1.3  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.065   12.8   0.0       0.11   12.0   0.0    1.4  1  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   2.4e-14   6.2e-11       1     231 [.       7     258 ..       7     267 .. 0.77

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 2.4e-14
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...........EEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HH..HHHHSHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl...........elveldltdrsalerlfkeeqpdavihlAa.vggva..assedpa 85 
                 +l+tGatG++G  ++ +lle gy v ++ r + ++   r+  l           ++v  ++t + a  +++k  ++  v+h+A   +g +  ++ + ++
  CCE27807.1   7 VLLTGATGMVGFRVLMRLLESGYFVRTVVRTQAGFD--RISSLpcirnyksqlsSIVVPNITAPFAYYEAVK--GAKFVVHVASpSSGAHltTQEDFQE 101
                 699**********************99999965555..455556699****999999999999999999999..9*******99766544114555678 PP

                 HHHHHHTHHHHHHHHHHHHH.TCTEEEEEEEGGGGTSCSSSS....BSTCSTTS--....--SSHHHHHHHHHHHHHHHHHHHH..T-EEEEEEESEEE CS
   Epimerase  86 dfieknlqgtlnlleaarka.gvkrllflsSsevYGkdaeqp....keettltgpl....kpnspYaaaKlageklveayaaqy..glnaiilrlfnly 173
                  +i+  +qgt+ lleaa+    vkr++  + s     ++++      +e+tl+  +       + Ya++K+++   ++++ ++   ++ ++++ +  ++
  CCE27807.1 102 HIIRPAVQGTTGLLEAAQWVnSVKRVVITGCSKSTVSQERIMsgalIDENTLDVDVsgrlTRLNVYARSKALAFAAIQDFLRDKtpQFTVVNILPVFII 200
                 89999*************6647889999998666555555322467555555444444449*******************9999455666666777777 PP

                 STTS-TTSTTSHHHHHHHHHHTTS.....SSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT CS
   Epimerase 174 Gprngegevsrvipalirkilegk.....qevtllgdgtalRdflyveDvaeaillvlehvda 231
                 G  +  + v+  +++  ++il g      + +t++g g++    ++ +Dvae+++++l++  +
  CCE27807.1 201 GRDDKITGVKPYYSKGTNSILMGPllgikNHITVMG-GNS----VHLDDVAELHVRALDENLT 258
                 887555557777777777777766655556888888.877....9*************99444 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1     7e-10   1.8e-06       2     200 ..       9     220 ..       8     268 .. 0.66

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 7e-10
   3Beta_HSD   2 vtGgaGFlGralvkeLvrlee.lkevrvlD.....lrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag....kltedeimk 90 
                 +tG++G +G ++  +L++ +  +++v         +   p    +  k++  +++   +t      ea++g++ v+h+as +  a     ++ +++i +
  CCE27807.1   9 LTGATGMVGFRVLMRLLESGYfVRTVVRTQagfdrISSLPC--IRNYKSQLSSIVVPNITAPFAYYEAVKGAKFVVHVASPSSGAHlttqEDFQEHIIR 105
                 79******************976665433334423333333..466677778899***********************987654431111555667889 PP

   3Beta_HSD  91 vnvkGTrnvleacv.kagvrvlvYtS.saevvg.pnslgeeilngdEeleyesl.....hqdaypesKalaEklvlkaNgrtlkngg.rlyTcaLRpag 180
                   v+GT  +lea+   ++v+++v t  s + v  +  ++ +++  dE++    +       ++y++sKala +++       l++   ++  + + p+ 
  CCE27807.1 106 PAVQGTTGLLEAAQwVNSVKRVVITGcSKSTVSqERIMSGALI--DENTLDVDVsgrltRLNVYARSKALAFAAIQ----DFLRDKTpQFTVVNILPVF 198
                 99*********9973689*999987513444440444455555..666544333234447899******9988775....3677777788888888888 PP

   3Beta_HSD 181 iyGegdkll..vpllkqlaklg 200
                 i G  dk +  +p + + +++ 
  CCE27807.1 199 IIGRDDKITgvKPYYSKGTNSI 220
                 8888776541144555555544 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1     1e-08   2.6e-05       1     102 [.      11     136 ..      11     193 .. 0.77
   2 ?    1.9   0.0      0.07   1.8e+02     161     183 ..     233     255 ..     222     256 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1e-08
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH...HHH.....CTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC.....HHHH..... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpekla...ele.....aeeglevvegdvtdvedlaealkgadaVvsalggggk.....deeg..... 77 
                     GAtG vG +++ +ll++g + v+ +vR+++ ++   +l+     +++  ++v+ ++t + +  ea+kga  Vv  ++++++     +        
      CCE27807.1  11 GATGMVGFRVLMRLLESG-YFVRTVVRTQAGFDrisSLPcirnyKSQLSSIVVPNITAPFAYYEAVKGAKFVVHVASPSSGahlttQ--Edfqeh 102
                     9****************5.*********9766522244455453344556778899999***********99999955555455551..134566 PP

                     ........HHHHHHHHHHCT.--EEEEEEETTTT CS
  NAD_binding_10  78 ........aknivdaakeag.vkRfvlvsaigvg 102
                             +  +++aa+  + vkR+v+ +  +++
      CCE27807.1 103 iirpavqgTTGLLEAAQWVNsVKRVVITGCSKST 136
                     6888888899999999975449999998776665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.07
                     SS----EEEHHHHHHHHHHHCTX CS
  NAD_binding_10 161 epfkggsisradVAdvlvavldd 183
                     + ++g+s+  +dVA++ v++ld+
      CCE27807.1 233 TVMGGNSVHLDDVAELHVRALDE 255
                     567899**************997 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   9.9e-05      0.25       1      32 [.       9      38 ..       9      56 .. 0.83
   2 !   10.3   0.0   0.00011      0.27      94     201 ..      89     192 ..      68     245 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.9e-05
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SS CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRak 32
                   lTGaTG++G ++l +LL++     +  +vR++
     CCE27807.1  9 LTGATGMVGFRVLMRLLESGY--FVRTVVRTQ 38
                   8****************9987..455556655 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00011
                    --SS-S.STTSSE.EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHH CS
  NAD_binding_4  94 saAtvnfdepyke.llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvr 188
                    s+A ++ +e+ +e ++r+ v+Gt  +le a+ +++    + v T++++ + +   +e++++    +e + + + +      n Y +sKala   ++
     CCE27807.1  89 SGAHLTTQEDFQEhIIRPAVQGTTGLLEAAQWVNSV--KRVVITGCSKSTVS---QERIMSGALIDENTLDVDVSGRLTRLNVYARSKALAFAAIQ 179
                    5789999999988799************99966444..44455555555444...57788877778888888888888899**********99999 PP

                    HHHHHH---EEEE CS
  NAD_binding_4 189 earrrsglpvviv 201
                    +  r ++ ++++v
     CCE27807.1 180 DFLRDKTPQFTVV 192
                    9887644444444 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.7e-07    0.0007       1     132 [.       8     137 ..       8     195 .. 0.76
   2 ?   -1.7   0.0      0.56   1.4e+03     299     324 ..     300     324 ..     236     330 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.7e-07
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S--...-HHHHTT CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqs...hVdvsfe 93 
                    L TG +G +G  ++ +Lle gy v  +vr ++ f+  ri++l   ++  +++  +++  ++t   +  ++++ ++   v++ A  s   h  ++ +
     CCE27807.1   8 LLTGATGMVGFRVLMRLLESGYFVRTVVRTQAGFD--RISSLPCIRNY-KSQLSSIVVPNITAPFAYYEAVKGAK--FVVHVASPSsgaHLTTQED 98 
                    78**************************9999876..88888765544.4567789999**************95..69****9974446777777 PP

                    SHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGG CS
  GDP_Man_Dehyd  94 kPeytaevnvlGtlrLLeairalglekkvrfyqaStsEv 132
                      e  ++  v Gt+ LLea++ ++  k+v +   S s+v
     CCE27807.1  99 FQEHIIRPAVQGTTGLLEAAQWVNSVKRVVITGCSKSTV 137
                    77999***************9998877777766666665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.56
                    -SS--SB--B-THHHHHHH----SS- CS
  GDP_Man_Dehyd 299 rpgevdlllgdaskakeeLgWkpkvs 324
                    rp+   ++  d+skak+ Lg + k+ 
     CCE27807.1 300 RPS-TSAVNVDNSKAKRLLGREFKTY 324
                    554.3466789999999999776665 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.8e-05     0.073       1     130 [.       7     134 ..       7     145 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.8e-05
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH.......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE----...--H CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeieke.leeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAl...KhV 90 
                      vl+tGa+G +G +++ ++l++    ++ + r+    ++i++  + +++k+ +l+     v+ +++      +a++  + ++v+h+A      h+
       CCE27807.1   7 VLLTGATGMVGFRVLMRLLESGY-FVRTVVRTQAGFDRISSLpCIRNYKS-QLS---SIVVPNITAPFAYYEAVK--GAKFVVHVASPssgAHL 93 
                      899****************9954.34444566667777777643334443.553...4589999999********..9*******97522279* PP

                      HHHHHSHHHHHHHHHHHHHHHHHHHHH.TT-SEEEEEEEGG CS
  Polysacc_synt_2  91 PlveenpleaiktNvlgtenvieaaie.agvkkvvliStDK 130
                       + e +  + i+  v gt+ ++eaa+  + vk+vv+    K
       CCE27807.1  94 TTQEDFQEHIIRPAVQGTTGLLEAAQWvNSVKRVVITGCSK 134
                      *************************8526799999877666 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.4e-05      0.11       1      73 [.       7      86 ..       7     112 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.4e-05
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S.......-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE--- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt.......kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtg 73
                +l +GaTG  G  v   ll++g+ vr +vR +       +   +++ k++   +v  ++       ea+kg++ v  v +
  CCE27807.1  7 VLLTGATGMVGFRVLMRLLESGYFVRTVVRTQagfdrisSLPCIRNYKSQLSSIVVPNITAPFAYYEAVKGAKFVVHVAS 86
                6899**************************99877777766777777777777777777777777777777776665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2558.66
//
Query:       CCE27808.1  [L=227]
Description: probable heat shock protein 30 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-18   65.3   0.2    1.6e-12   47.5   0.1    2.4  2  HSP20       Hsp20/alpha crystallin family
    1.5e-05   24.5   0.0       0.01   15.4   0.0    2.2  2  ArsA_HSP20  HSP20-like domain found in ArsA
  ------ inclusion threshold ------
       0.44    9.7   2.3       0.54    9.4   2.3    1.1  1  Zip         ZIP Zinc transporter
       0.74    8.5   2.5       0.79    8.4   2.5    1.1  1  Presenilin  Presenilin


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.4e-06     0.011       1      39 [.      55      94 ..      55     146 .. 0.90
   2 !   47.5   0.1   3.6e-16   1.6e-12      37     101 ..     165     226 ..     149     227 .] 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.4e-06
                E--SSEEEEEEEEE-TT--CCCEEEEEETTE.EEEEEE-- CS
       HSP20  1 dikeeeeefevkldvpglkkeelkvkvednr.vlvkgehe 39
                d++e+ +++e++ ++pg++k++++++ +d + ++++g  e
  CCE27808.1 55 DVRETSDNYELHGELPGINKDNVHIEFTDPQsLVIRGRAE 94
                67899**********************9977699999887 PP

  == domain 2  score: 47.5 bits;  conditional E-value: 3.6e-16
                 E--..---TT----SS---EEEEEE--STTB-TTT-EEEEETTEEEEEEEBSS--..-------- CS
       HSP20  37 eheeeeedekglikerssrkFsrkftLPenvdadkvkaslkdGvLtvtvpkkepekkkkerkiqi 101
                 ++++ e++ k++ +ers+++F r+f+ P  vd+d+v+as++dGvL + vpk++++     r+++i
  CCE27808.1 165 QQQHSEHGVKYWLSERSVGEFARSFNFPSPVDQDAVSASFNDGVLNIVVPKSKKQ---GARRVAI 226
                 333568888999***************************************9998...7788887 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00094       4.2       2      32 ..      61      92 ..      60      99 .. 0.81
   2 !   15.4   0.0   2.3e-06      0.01      31      61 ..     182     211 ..     181     213 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00094
  ArsA_HSP20  2 deyvlkldLPfvdkeeidlsrs.gdeLtIkig 32
                d+y+l+ +LP+++k++++++ +  + L+I+  
  CCE27808.1 61 DNYELHGELPGINKDNVHIEFTdPQSLVIRGR 92
                789***************98663567777765 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.3e-06
  ArsA_HSP20  31 ignfrRqitLPsvlarkevtsAkfedgvLeI 61 
                 +g f R++  Ps ++++ v sA+f+dgvL+I
  CCE27808.1 182 VGEFARSFNFPSPVDQDAV-SASFNDGVLNI 211
                 899**************77.**********9 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.3   0.00012      0.54     122     175 ..     120     171 ..     103     205 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00012
         Zip 122 aakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeed 175
                 + ++s ++ +ve++++ e+ +a a ++ ++ke++++++ ek++++++q++ +e+
  CCE27808.1 120 GEGGSSHKATVEDEKD-ESSGAAASSEGNKKEKQQQQQVEKTDKKTQQQH-SEH 171
                 5566677777777776.566788888888888888888888888888876.333 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.5   0.00018      0.79     270     323 ..     114     174 ..      25     188 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00018
  Presenilin 270 e.........seeeseeesseaessaeesseekeseessesseeeeeeeeeeeeseseergvk 323
                           s+++++ e +++ess ++ s+e +++e++++++ e+++++++++  + e+gvk
  CCE27808.1 114 GaiteggeggSSHKATVEDEKDESSGAAASSEGNKKEKQQQQQVEKTDKKTQQQ--HSEHGVK 174
                 044444444322233333333333333333333333333333332222222222..2234555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2061  (0.114953); expected 358.6 (0.02)
Passed bias filter:                      873  (0.0486921); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 1670.65
//
Query:       CCE27809.1  [L=344]
Description: uncharacterized protein CPUR_01283 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-44  150.2   0.0    1.9e-43  148.6   0.0    1.7  2  Cyclin    Cyclin
  ------ inclusion threshold ------
      0.054   13.3   0.0      0.088   12.6   0.0    1.3  1  Cyclin_N  Cyclin, N-terminal domain
        4.2    8.0   7.4       0.66   10.6   2.9    1.8  2  Pex14_N   Peroxisomal membrane anchor protein (Pex14p) conser


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.4      0.56   3.4e+03      31      34 ..     114     117 ..      76     151 .. 0.47
   2 !  148.6   0.0   3.2e-47   1.9e-43      26     161 .]     168     301 ..     154     301 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.56
                 ---T CS
      Cyclin  31 nlen 34 
                 ++++
  CCE27809.1 114 TSSD 117
                 1111 PP

  == domain 2  score: 148.6 bits;  conditional E-value: 3.2e-47
                 --------T.....................T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHHHH CS
      Cyclin  26 adsksnlensqkqssshtkttfaqtpkessFatkavpaisigsylsrlqkfgesaplvllgtliYldrivkrcvsealvvtsanihRllivallvatKf 124
                 ++++ + +++++++++++++++++ +++++F++k  p+isi +yl+rl++f++++++v+l+t++Y++r++    ++a+ vt +n+hRl++++l+vatK+
  CCE27809.1 168 KHNPPEPQPYIIVGEDSQPINIQHGAITRKFYSKKEPPISINQYLIRLHQFCPMSTAVYLATSLYIHRLAV--EERAIPVTRRNAHRLVLAGLRVATKA 264
                 677888899*************************************************************9..9************************* PP

                 H-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT-- CS
      Cyclin 125 lvDlsysnekfakvggislkELnkLEidFlflvdFdl 161
                 l+Dlsy+++k akvgg+s+ EL++LEi+F+fl +F+l
  CCE27809.1 265 LEDLSYPHAKIAKVGGVSEVELARLEISFCFLAGFEL 301
                 ***********************************96 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.5e-05     0.088      34      91 ..     208     268 ..     193     293 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS...---CCCHHHHHHHHHHHHHHHHSSS CS
    Cyclin_N  34 lidwlvevaekfkltpetlflavnyldRflskk...svpkdklqlvgatcLllAaKveeis 91 
                 + ++l+++++   +++ + + +  y++R+  ++    v+++++++++++ L +A+K  e+ 
  CCE27809.1 208 INQYLIRLHQFCPMSTAVYLATSLYIHRLAVEEraiPVTRRNAHRLVLAGLRVATKALEDL 268
                 6689*************************985435678999***************97764 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.4      0.73   4.4e+03      92      97 ..      75      80 ..      57     111 .. 0.41
   2 ?   10.6   2.9   0.00011      0.66      66     153 ..     134     233 ..      95     234 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.73
     Pex14_N 92 psppaq 97
                + +  q
  CCE27809.1 75 QMSGLQ 80
                111111 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00011
     Pex14_N  66 a...........qeesasssatpqpqaasqtsqsspspsppaqqqqqqy......rpPivtypefltkppkppppPlrtwrdllitatalaglgaglyg 147
                 +           + ++++  atp+++++    q +++p++p++     y       +Pi+ ++  +t+   +++ P ++ +++li +  +  +++ +y 
  CCE27809.1 134 SmtqrqditsgaSLTTTDWGATPTEPQPIDGVQLKHNPPEPQP-----YiivgedSQPINIQHGAITRKFYSKKEPPISINQYLIRLHQFCPMSTAVYL 227
                 0111122333332233333344444444444444444442222.....234455667887777777776666678888********************* PP

     Pex14_N 148 lskryi 153
                 +++ yi
  CCE27809.1 228 ATSLYI 233
                 **9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2543.41
//
Query:       CCE27810.1  [L=490]
Description: related to reticuline oxidase (berberine bridge enzyme) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-32  111.3   0.8    6.1e-32  110.3   0.6    1.7  2  FAD_binding_4  FAD binding domain
    2.2e-14   53.3   0.1    4.9e-14   52.1   0.1    1.6  1  BBE            Berberine and berberine like


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.6   6.8e-36   6.1e-32       2     138 ..      49     185 ..      48     186 .. 0.95
   2 ?   -3.2   0.0      0.72   6.4e+03      63      92 ..     292     321 ..     289     326 .. 0.71

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 6.8e-36
                    EEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC..SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTT CS
  FAD_binding_4   2 aavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav..atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsg 95 
                     av+rp +++eva+a+++a ++++ v +r+gG+s++   +  ++g +++d++r+++  e+d+++++at++aG +lg+l++ l+++g  +    g++
     CCE27810.1  49 VAVIRPNNANEVAEAVKCAVREKIYVQARSGGHSYGNFGTggQDGSLMIDMTRFKD-FEMDKTTWRATFGAGYKLGELDKKLHKHGKRAM-AHGTC 142
                    68**********************************6665589999**********.8****************************9999.67999 PP

                    CGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  96 ipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                      ++vGG++  +++G+ s+++G++ d+vl++evv+adG+v+++
     CCE27810.1 143 PGVGVGGHLTVGGIGPSSRMWGTSLDHVLEMEVVTADGQVRKA 185
                    999*************************************986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.72
                    TTEEEEETTSBHHHHHHHHHHHTTECSSGG CS
  FAD_binding_4  63 egtatveaGvtlgdlvealaakglllglep 92 
                    +gt+ ++a   lg l++ ++++gl+l   p
     CCE27810.1 292 GGTIDAKATNWLGSLAHMAEKTGLVLSNVP 321
                    667777777778888888888888877555 PP

>> BBE  Berberine and berberine like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.1   5.5e-18   4.9e-14       2      45 ..     424     468 ..     423     469 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 5.5e-18
                 -TTS--GGG-H.HHHHHHHGGGHHHHHHHHHHH-TT--S--TT-- CS
         BBE   2 YvNyrdldlgk.ewgerYFggNferLvkvKtkyDPdNvFrneqsI 45 
                 Y  y d++l + e +++Y+g+N++rL+++Ktk+DP++vF+n++s+
  CCE27810.1 424 YAGYVDPELDRsEAQQTYWGKNLPRLRQIKTKWDPNDVFHNPHSV 468
                 88999**99988********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3716.83
//
Query:       CCE27811.1  [L=440]
Description: related to NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-18   66.7   0.0    3.5e-18   65.6   0.0    1.6  1  UDPG_MGDP_dh     UDP-glucose/GDP-mannose dehydrogenase family
    8.3e-17   61.4   0.1    7.4e-15   55.0   0.1    2.2  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
    0.00019   21.7   0.0     0.0003   21.0   0.0    1.3  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
      0.007   15.7   0.0      0.013   14.9   0.0    1.4  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.033   14.4   0.0    1.6  1  TrkA_N           TrkA-N domain
      0.016   15.1   0.0      0.028   14.3   0.0    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.017   15.9   0.0      0.062   14.0   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
       0.11   12.9   0.0       0.27   11.7   0.0    1.7  1  UDPG_MGDP_dh_C   UDP-glucose/GDP-mannose dehydrogenase family


Domain annotation for each model (and alignments):
>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.6e-21   3.5e-18       2      74 ..     233     304 ..     232     315 .. 0.95

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 1.6e-21
  UDPG_MGDP_dh   2 tAEliKlaaNaflatkIsfiNelanlcealgidveeVieavgldprigpkflkpglGvGGsclpkDvkaLval 74 
                    AE++Kl +N+++ + I+++Ne+a+ c  +gid  eV +a++++p+ g+  + pg+GvGG+c+p+ +++L+++
    CCE27811.1 233 VAEMTKLYENCQRMVCIAYANEMADACIPHGIDPFEVCRAASTKPF-GYIPIVPGAGVGGHCIPVNPHYLLSN 304
                   7********************************************9.7999*******************986 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   3.3e-18   7.4e-15       3     177 ..      55     205 ..      53     215 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 3.3e-18
                     EEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-TTTTCB-T CS
  UDPG_MGDP_dh_N   3 isviGlGYvGlvtaavlaeighevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPskkkgkaaDl 97 
                     ++viG GYvG     v+++   +vig Di++++ d++++            +  +++   r++ft++ ++ +++a  ++iaV+T     +k +D 
      CCE27811.1  55 VAVIGVGYVGQHLVEVFSR-EYQVIGYDISQARLDQVKR------------VFSSNA---RVQFTMSPKE-LRHATHFLIAVPTLLLP-DKRIDS 131
                     89**********9999986.689************9875............566666...8999999777.*************9999.9999** PP

                     HHHHHHHHHHHHHHHCEEEEEE-S---TTHHHHCHHHHHHHHCSS-TTCEEEEE------TTSHHHHHHS-S-EEEEESS CS
  UDPG_MGDP_dh_N  98 kyvesaarsiaealkkgkvvvvkSTvpvgtaeelvkkileeaskkkgvdfdvvsnPEflregsavkdllnpdrvviGvee 177
                     +y+ sa+r++a ++  g+++v++S v+vg ++el+ +++ e+       f+  ++PE++++g +       +++v G ++
      CCE27811.1 132 SYLRSALRTVAGHAVAGSTIVIESSVAVGMTRELLGPLAVERG------FYAGMSPERVDPGRTSPAAHVIPKIVSGLDD 205
                     ********************************99999987554......899***********************99876 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.4e-07    0.0003       2     101 ..      55     166 ..      54     177 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.4e-07
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.....EEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHHS.....HCCC--TT- CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.....akaaesieelvasl...dvvitmvkagkavdevieg.....llealkkgd 84 
                    +++iG+G  G+++++   +++y+v++y+ ++++++++         ++ + s++el ++     +v t++  +k +d+ + +     ++ ++ +g+
     CCE27811.1  55 VAVIGVGYVGQHLVEV-FSREYQVIGYDISQARLDQVKRVFssnarVQFTMSPKELRHAThflIAVPTLLLPDKRIDSSYLRsalrtVAGHAVAGS 149
                    79***********975.6789**********99988876545567799999999999988666667778888888888888889888999999999 PP

                    EEEE-S---HHHHHHHH CS
  NAD_binding_2  85 ilidgstsspedtrela 101
                    +++  s++++  trel 
     CCE27811.1 150 TIVIESSVAVGMTRELL 166
                    99999999999999875 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.6e-06     0.013      22     102 ..      48     125 ..      42     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.6e-06
                  EETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEEHCHHHHHHHHHHHH-SEEEE---BT CS
  AlaDh_PNT_C  22 gvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvevlksqeellaeavkeadvvigtvlip 102
                  gv+  ++a v viG+G +G++ +++ ++ + +V  +D+++arl q++  + ++  +v+   + +  +++ +  + + t l+p
   CCE27811.1  48 GVR--REALVAVIGVGYVGQHLVEVFSR-EYQVIGYDISQARLDQVKRvFSSN-ARVQFTMSPKELRHATHFLIAVPTLLLP 125
                  455..7899**************99887.889****************63333.4554333333334555555556665555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.5e-05     0.033       1      41 [.      55      94 ..      55     123 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTT CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeg 41
                +++iG+G vG++l+e +s+++ +v++ d +++r++++++ +
  CCE27811.1 55 VAVIGVGYVGQHLVEVFSREY-QVIGYDISQARLDQVKRVF 94
                68*****************99.6*************98544 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.3e-05     0.028       2      45 ..      55      97 ..      54     118 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.3e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieks 45
                vaviG G +G+ + +vf  ++++V  +dis+++l+++++  +++
  CCE27811.1 55 VAVIGVGYVGQHLVEVFS-REYQVIGYDISQARLDQVKRVFSSN 97
                9***************96.58**************999887764 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.8e-05     0.062       7      51 ..      59     103 ..      54     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
                      TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEE CS
  Methyltransf_25   7 GtGrltlalakrl.gkakvtgvDiseemleaareraeeeglnvefv 51 
                      G G + ++l + +  +++v+g Dis++ l+++++ +++ +++v+f 
       CCE27811.1  59 GVGYVGQHLVEVFsREYQVIGYDISQARLDQVKRVFSS-NARVQFT 103
                      8889999999999559******************9965.5788885 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012      0.27       1      48 [.     345     393 ..     345     430 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
                     EEE-SSSSTT-S--TT-HHHHHHHHHHHCTS.EEEEE-SSTHHCCCCHH CS
  UDPG_MGDP_dh_C   1 ailGlafKkdtdDlReSpaldiieeLleega.evkiyDPkvkeeaveae 48 
                     +++G+ fK++   l +Sp l++++ L   g+ +v+  DP v+++ + + 
      CCE27811.1 345 LVVGIGFKPGQSHLANSPGLELAKCLVLTGKvHVVWADPLVPQSSIPQI 393
                     589***********************9996627*********9988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3233.24
//
Query:       CCE27812.1  [L=323]
Description: related to chitin binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-24   84.4   0.0    9.5e-24   83.7   0.0    1.3  1  Polysacc_deac_1  Polysaccharide deacetylase
    1.9e-05   25.0  17.3    4.3e-05   23.9  17.3    1.5  1  Chitin_bind_1    Chitin recognition protein


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   1.1e-27   9.5e-24       4     111 ..     101     217 ..      98     221 .. 0.94

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 1.1e-27
                      TTSTEEEEEEEESSCSCHHHHHHHHHHCT--EEEEE-HHHHCH-.........HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHH CS
  Polysacc_deac_1   4 kgkksvalTfDdgprdntteilpvLkkykvkatffvigglvedy.........pdevremaasGveignHtinhsnlkrlseeevrreierakd 88 
                      +++  va+TfDdgp  +t+e+l++L + ++katff++g++ ++          p  + +m+ +G++ig+Ht++h nl+++s      e+  ++ 
       CCE27812.1 101 TKPGLVAITFDDGPYIYTNELLDLLGEFNAKATFFINGNNYAKPriddpatpwPTTLMRMHGEGHHIGSHTWTHVNLNTVSDTVRHSEVIYNEM 194
                      67889**********************************96666777779999***************************************** PP

                      HHHHHHS----EEE-GGGEE-HH CS
  Polysacc_deac_1  89 alrkalgreprlfryPygsasat 111
                      alr+++g  p+++r+P+++ ++t
       CCE27812.1 195 ALRNIFGWIPTYLRPPFLECDDT 217
                      *****************998886 PP

>> Chitin_bind_1  Chitin recognition protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9  17.3   4.8e-09   4.3e-05      10      35 ..      38      63 ..      28      65 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 4.8e-09
                   --STT-EE-TTSBEEBSHHHHSTT.-- CS
  Chitin_bind_1 10 tCplnvCCSqyGyCGttsdyCgag.Cq 35
                   +C    CCSqyGyCGt+++yCg + Cq
     CCE27812.1 38 SCV-DSCCSQYGYCGTSDEYCGGSqCQ 63
                   554.78***************6335*9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2419.12
//
Query:       CCE27813.1  [L=685]
Description: related to chitin synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-40  139.4   3.5    1.6e-29  102.9   1.9    2.2  2  Chitin_synth_2   Chitin synthase
    2.5e-07   30.7   0.0      0.014   15.2   0.0    2.4  2  Glycos_transf_2  Glycosyl transferase family 2
    7.6e-06   26.0  10.7    1.3e-05   25.3   4.3    3.1  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    0.00048   20.1   0.3      0.031   14.2   0.0    2.8  3  Glyco_tranf_2_3  Glycosyltransferase like family 2
  ------ inclusion threshold ------
        2.5    7.8  12.4       0.33   10.7   4.0    2.5  2  Yip1             Yip1 domain
        7.4    6.9   8.3       0.42   10.9   0.4    2.6  2  YiaAB            yiaA/B two helix domain


Domain annotation for each model (and alignments):
>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.3e-12   3.9e-09      21      92 ..     206     279 ..     192     288 .. 0.84
   2 !  102.9   1.9   5.4e-33   1.6e-29     203     502 ..     379     676 ..     353     682 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.3e-12
  Chitin_synth_2  21 efqlkfticlvtaysegeeglrttldslastdyddkr.klllvvcdGlikGsGndkstPeivl.dllkdavspk 92 
                       +l  +++l+++y e ++++ ++ldsl + +  dk+ +l+++++dG++ G G +k+t e+ l d+l d v+++
      CCE27813.1 206 ARPLEKMVMLLPCYNETKDEISRSLDSLIQQRGIDKHtRLIFIIVDGMVRGPGMEKTTHEYFLeDILTDGVTRS 279
                     45677899*******************9998876665389********************99856899888765 PP

  == domain 2  score: 102.9 bits;  conditional E-value: 5.4e-33
  Chitin_synth_2 203 eivlmvdadtkvapdsltrlvaalvkdpeilglcGetkia..nkkeswvtaiqvfeyyishhlskafes.vfGsvtclPGcfslyrikaakgadg 294
                     ++++ +dadt    ++++++++++ k pei+g+cG   ++   ++  ++++ q  ey  +  l + f+s + G v clPGc  l ++  a     
      CCE27813.1 379 DYLVGMDADTIFDDNCVAEMMTTIRKKPEIVGVCGHVCVDfdGRNFGFWSLYQSVEYSQTQGLRRMFQSrITGKVNCLPGCCQLIKVDEATF--- 470
                     678889****99999*********************988711456679*******************9967899*******99977765554... PP

  Chitin_synth_2 295 kwvPilvspeiveeysenvvdtlhkknllllGedrylttlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinstvhnllelvlvrdlcG 389
                         ++++++    y+ +  d + ++ +    ed   +++++  fp++kt    +ak+ t++P t+kv+lsqr+rw   ++ n  e+v++     
      CCE27813.1 471 --GDVVLRERF--GYCPKPNDVMTQQIMGNYSEDSIHASIIFSLFPRKKTAQALRAKAFTIVPQTWKVFLSQRKRWALGSISN--EFVMIFRPGI 559
                     ..345555554..7********************************************************************9..5666665555 PP

  Chitin_synth_2 390 tfcfsmrfvvfieligtvvlPvaiaftlylivasilk..sklvpviplvllaivlGlp.ailivl...tarkleyvawllvyllalPifnfvlPl 478
                     +++  ++ vv   +++  + P  ia +  liv+ + k  s +++   + l+++++    +i + l   + ++l+y + + ++l++ P +n ++  
      CCE27813.1 560 ILIERLQSVVA--VMTWAITPFIIAAVGQLIVMFVHKgkSVFEDKTFVGLISVLWAYSfCIGFWLprnNVERLQYFVGFFMHLFTSPFMNIIVLF 652
                     56667888776..577889999999999999988887523333333334555555544123344422155678888888999************* PP

  Chitin_synth_2 479 yafwhlddfswGetrvveGekkkk 502
                     y+    ddf wG+tr v   +++k
      CCE27813.1 653 YSLLYADDFKWGKTREVVASDGEK 676
                     ***************997665544 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.6e-05     0.078       4      35 ..     216     251 ..     214     253 .. 0.88
   2 !   15.2   0.0   4.7e-06     0.014      80     160 ..     378     462 ..     374     467 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.6e-05
                      EEESS-.TTTHHHHHHHHHHH...GGCCEEEEEEEE CS
  Glycos_transf_2   4 iptyNe.ektlletlesllaq...dpypdfeiivvD 35 
                       p+yNe ++++ ++l+sl++q   d++ ++  i+vD
       CCE27813.1 216 LPCYNEtKDEISRSLDSLIQQrgiDKHTRLIFIIVD 251
                      6*********************88888887777777 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 4.7e-06
                      SSEEEEEESSEEE-TTHHHHHHHHHHH.TT.CEEEEEEEEEECCCCCCCHC-SS...EEEECCHCCCCHCCCCCCSTTCSTCCCE CS
  Glycos_transf_2  80 gdyilflDaDdepdpdwleklvealekdga.dvvlgqrprifgetdeiernkrv...generlyfkerkrslkgnlsfeigsaal 160
                       dy++ +DaD+++d++++ +++  + k ++  +v+g++ + f+++++  + +     + ++ + ++  + +++g++ +  g++ l
       CCE27813.1 378 VDYLVGMDADTIFDDNCVAEMMTTIRKKPEiVGVCGHVCVDFDGRNFGFWSLYQsveYSQTQGLRRMFQSRITGKVNCLPGCCQL 462
                      58***********************996541345555555555555555544325565555555555555555566666666655 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.4     0.042   1.3e+02     123     181 ..     102     171 ..      85     185 .. 0.40
   2 !   25.3   4.3   4.2e-09   1.3e-05       3     195 ..     382     620 ..     380     656 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.042
  Glyco_trans_2_3 123 kekspltlraalr.........QrkRwayGc.el.eklillvrllgylgsllwsalplhlallllfslla 181
                      +e+  l++ a+           + ++wa+ + +l  + +l +++l ++    ++ ++l++  +l +++++
       CCE27813.1 102 QEEAKLRWNAEEElkriskdllRLQKWALIIgLLvLNSTLITVSLLLPQAMYLFLVLLSCNTMLQAGMVI 171
                      5555555333333333333443667777775311211111111111111111122222222222233333 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 4.2e-09
  Glyco_trans_2_3   3 lllDaDtvlppdclreiaaela.spevaivqgpvlvm...nvanwleelaalffaedhgkdilvre.algrvvpsvGsgaflrrsalq...... 85 
                      + +DaDt  + +c++e    ++  pe+  v+g+v v+   ++  +++  + +++++  g  + +++   g+v  ++G + ++ ++ ++      
       CCE27813.1 382 VGMDADTIFDDNCVAEMMTTIRkKPEIVGVCGHVCVDfdgRNFGFWSLYQSVEYSQTQGLRRMFQSrITGKVNCLPGCCQLIKVDEATfgdvvl 475
                      669****************99956*******99998776767799*********8877777777772556677788999999999988997777 PP

  Glyco_trans_2_3  86 ...........evggwdgdessvsED...fdmglrlqrkGyrvrfvpeslvkekspltlraalrQrkRwayGc..el.....eklillvrllgy 158
                                 +v + +   ++ sED    ++ ++l+ +  +     +   ++ +p t++ +l QrkRwa+G   +      ++ i+l+ +l  
       CCE27813.1 476 rerfgycpkpnDVMTQQ-IMGNYSEDsihASIIFSLFPRKKTAQALRAK-AFTIVPQTWKVFLSQRKRWALGSisNEfvmifRPGIILIERLQS 567
                      77555555555554444.5579999944457889999887777777777.8*********************8651155567777777777755 PP

  Glyco_trans_2_3 159 lgsll.wsalplhl.allllfslla..............lalvlllllllaal 195
                         ++ w+  p+ + a+  l  ++               l+ vl+++ + +++
       CCE27813.1 568 VVAVMtWAITPFIIaAVGQLIVMFVhkgksvfedktfvgLISVLWAYSFCIGF 620
                      43332255555555222222222222444466666666655555555444444 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.27   8.1e+02       7      40 ..     215     252 ..     211     256 .. 0.78
   2 !   14.2   0.0     1e-05     0.031      89     167 ..     379     463 ..     364     469 .. 0.78
   3 ?    1.7   0.2     0.067     2e+02     213     230 .]     528     545 ..     512     545 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.27
  Glyco_tranf_2_3   7 lVptfneed.vlgevlesllaqey...prvevvvvvde 40 
                      l p++ne++ ++ + l+sl+ q     ++  ++++vd+
       CCE27813.1 215 LLPCYNETKdEISRSLDSLIQQRGidkHTRLIFIIVDG 252
                      679****9989*********997435566777777765 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1e-05
  Glyco_tranf_2_3  89 dlvllvDdDtvvePdtlkrllqffltpkvgavg..tpvfllnrstl...vsalgalefaerhlrflaarralg..vltlnGsgsli 167
                      d+++ +D+Dt+ +++ ++ + +++ ++k+++vg  ++v ++ + +    +s ++ +e+ +++  ++ ++ +++  v +l G + li
       CCE27813.1 379 DYLVGMDADTIFDDNCVAEMMTTI-RKKPEIVGvcGHVCVDFDGRNfgfWSLYQSVEYSQTQGLRRMFQSRITgkVNCLPGCCQLI 463
                      67889******************9.888888884345555775533366*************977777766632477777766655 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.067
  Glyco_tranf_2_3 213 fpsslkayikqrnRwvyg 230
                       p+++k +  qr Rw+ g
       CCE27813.1 528 VPQTWKVFLSQRKRWALG 545
                      5799***********975 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.0     0.055   1.6e+02     111     158 ..     146     193 ..     116     194 .. 0.67
   2 ?   10.7   4.0   0.00011      0.33      98     147 ..     566     620 ..     563     650 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.055
        Yip1 111 lilgaliaillllllgt..llllvgllaliWslvllylglkaahnlskkk 158
                 l+l +  +++l+ll     ++l +g++++i + vl++  ++ + +l ++k
  CCE27813.1 146 LLLPQAMYLFLVLL--ScnTMLQAGMVICITAHVLWTSLVRGCRRLRNGK 193
                 22222223333333..2558999999999999999999999999998887 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00011
        Yip1  98 kqtlsvvgyallPlilgaliaillllllgt.....llllvgllaliWslvllylg 147
                   +++v+ +a +P+i++a+  ++++++  +       ++vgl++++W++ +++++
  CCE27813.1 566 QSVVAVMTWAITPFIIAAVGQLIVMFVHKGksvfeDKTFVGLISVLWAYSFCIGF 620
                 5789***********************999*****88888888888888666654 PP

>> YiaAB  yiaA/B two helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.8         1     3e+03       8      38 ..     129     159 ..     123     163 .. 0.76
   2 ?   10.9   0.4   0.00014      0.42      15      43 ..     615     642 ..     604     644 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1
       YiaAB   8 sfllalvlllvGlwylpldlseKgfyamgll 38 
                 +++++l++l   l+   l l +  +++++ll
  CCE27813.1 129 ALIIGLLVLNSTLITVSLLLPQAMYLFLVLL 159
                 7888888888888877888888888888777 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00014
       YiaAB  15 lllvGlwylpldlseKgfyamgllfllfs 43 
                  +++G w lp ++ e+  y++g+++ lf+
  CCE27813.1 615 SFCIGFW-LPRNNVERLQYFVGFFMHLFT 642
                 689****.******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4651.49
//
Query:       CCE27814.1  [L=551]
Description: related to SUC2-invertase (sucrose hydrolyzing enzyme) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-70  237.2   2.4      4e-70  236.8   2.4    1.2  1  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom
    7.4e-08   32.5   0.1    1.3e-07   31.8   0.1    1.4  1  Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal


Domain annotation for each model (and alignments):
>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.8   2.4   4.5e-74     4e-70       1     296 [.      50     355 ..      50     366 .. 0.91

  Alignments for each domain:
  == domain 1  score: 236.8 bits;  conditional E-value: 4.5e-74
                      SB--SSEEEEEEEEEEE.CTTEEEEEEEEETTSSSS-SBEEEEEEESSSSSBEEEEEEE-SSSGGCTTEEEEEEEEE-TT-...........EE CS
  Glyco_hydro_32N   1 HfqppkgwlNDPnglvy.ykgeYhlFYqynpkgavwgnisWghavSkDlvhWeelpvalapdeefdsngafSGsavvdddk...........lv 82 
                      H++ppkg++NDPng++   +g +h++Yqynp+g + gn +Wgha+S Dl hW+++p+al p+++     + +Gsavvd ++           +v
       CCE27814.1  50 HYSPPKGFMNDPNGMFRdADGLWHYYYQYNPTGLTPGNQHWGHATSPDLYHWTNQPPALFPEDNLF---ILTGSAVVDLSNtsgffpnqtngVV 140
                      9***************989*******************************************8777...9********9988************ PP

                      EEEEEE-T....CSEEEEEEEEESSTTSSEEE-TT--SB-.-TTTSTTSEEEEEEEEETTTEEEEEEEECCTTCCEEEEEEESSSSSEEEECCE CS
  Glyco_hydro_32N  83 llYTgnvk....eeeqvQnlayskdkgreftkyeenpviaekpeentkhfRDPkvawkedgkwvmvvgaqdkkkgkillYkskdlkewelasel 172
                      ++YT        e  q+Q +a+s+d g++ft +e+npvi++    n++++RDPk++w+e ++wvm+++  d  + ++ +Y+s +l++w++as++
       CCE27814.1 141 AMYTLAEIingvEGPQQQAIAISHDGGYHFTPFEHNPVIPS----NSSDVRDPKIIWYE-DHWVMALAYAD--SFTMGIYTSPNLIDWTHASNF 227
                      ****98768886669*************************7....89**********98.89*********..99******************* PP

                      SEECC.TTTEEEEEEEEEEECS.....TT-ECEEEEEEEEC.STTTTTTEEEEEEEEEETTTTEEEECCCCCEESBSSSS-EEEEEECC..TTT CS
  Glyco_hydro_32N 173 leskkekggmwEcpdlfeldek.....deeekvklvlkvspqgledntsqdyyfigkfdaekkkftadeeelkelDyGkdfYAsqtfed..edk 259
                      + + +  g  wE p+l++++       +ee+ + l++ ++p ++ +++s + yf+g+f  ++++fta ++  +  D Gkd YA q f+    d+
       CCE27814.1 228 TGTGT-LGAEWETPNLVRMPYYnqrgeKEEDMWLLLIGINPGAP-KGGSGALYFLGNF--NGTHFTAVDQVPRLADFGKDNYAGQYFHPlsGDD 317
                      ***97.8************9887888766778999999999555.5************..9****9998888999************9963444 PP

                      CEEEEEEES-TTTHCCCCC...CTEE-EE--EEEEEES- CS
  Glyco_hydro_32N 260 rriligWmgewdseeadvp..ekgwagalslpReltlkd 296
                      + +++ W+++w+++ + vp  +++w+++ slpR+  l++
       CCE27814.1 318 EPVFMTWASNWQYT-KAVPtgHEDWRSVTSLPRRTYLTK 355
                      9************7.7777799***********988855 PP

>> Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   1.4e-11   1.3e-07      74     142 ..     443     512 ..     378     531 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.4e-11
                      EEEEE-TTSG...GT.TT----.EEEE---...-EEEEEEEETTEEEEEET.TTEEEEEE--..TTTTEEEE CS
  Glyco_hydro_32C  74 slvvdRtksgetdfk.ndfasg.esaplel.dgklkLrilvDkssvEvFvndGrtaiTsrvyPtedstgirl 142
                       +++dR     + f+ n f ++  s +  + dgk ++  + D+ +vEvF n+G   iTs+++P+e+ t + +
       CCE27814.1 443 DFYLDRGGA--QAFNnNPFFTDkFSTNSYAtDGKWSMSGVFDRTIVEVFLNGGIDSITSIFFPKEPLTVLTI 512
                      456666666..3355577777777777777899*******************************99776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       203  (0.0113224); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3844.34
//
Query:       CCE27815.1  [L=564]
Description: related to SUC2-invertase (sucrose hydrolyzing enzyme) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-72  242.6   4.1    8.7e-72  242.3   4.1    1.2  1  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom
    1.3e-07   31.7   0.1    2.2e-07   31.0   0.1    1.3  1  Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal


Domain annotation for each model (and alignments):
>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.3   4.1   9.6e-76   8.7e-72       1     296 [.      63     369 ..      63     380 .. 0.91

  Alignments for each domain:
  == domain 1  score: 242.3 bits;  conditional E-value: 9.6e-76
                      SB--SSEEEEEEEEEEE.CTTEEEEEEEEETTSSSS-SBEEEEEEESSSSSBEEEEEEE-SSSGGCTTEEEEEEEEE-TT-...........EE CS
  Glyco_hydro_32N   1 HfqppkgwlNDPnglvy.ykgeYhlFYqynpkgavwgnisWghavSkDlvhWeelpvalapdeefdsngafSGsavvdddk...........lv 82 
                      H++ppkg++NDPng++   +g++h++Yqynp g + g+ +Wgha+S Dl hW+++pval p +++    + SGsavvd ++           +v
       CCE27815.1  63 HYSPPKGFMNDPNGMFRdGNGTWHYYYQYNPVGLTPGRQHWGHATSPDLYHWTNQPVALFPPAHN--LFVLSGSAVVDVNNtsgffpnqtngVV 154
                      9***************978*****************************************99744..479**********99************ PP

                      EEEEEE-T....CSEEEEEEEEESSTTSSEEE-TT--SB-.-TTTSTTSEEEEEEEEETTTEEEEEEEECCTTCCEEEEEEESSSSSEEEECCE CS
  Glyco_hydro_32N  83 llYTgnvk....eeeqvQnlayskdkgreftkyeenpviaekpeentkhfRDPkvawkedgkwvmvvgaqdkkkgkillYkskdlkewelasel 172
                      ++YT   +       q+Q +ays+d g++ft ye+np+i++    ++k+fRDPk++w+e ++wvm+++     +  i +Y+s++l++w++as++
       CCE27815.1 155 AIYTLLERndgvPGPQQQAMAYSHDGGYHFTPYEHNPIIPS----TSKEFRDPKIIWYE-DHWVMAIAYAA--DFVIGIYTSSNLIDWTHASNF 241
                      ****998877743389************************7....799*********98.89********9..99******************* PP

                      SEECC.TTTEEEEEEEEEEECS.....TT-ECEEEEEEEEC.STTTTTTEEEEEEEEEETTTTEEEECCCCCEESBSSSS-EEEEEECC.TTT. CS
  Glyco_hydro_32N 173 leskkekggmwEcpdlfeldek.....deeekvklvlkvspqgledntsqdyyfigkfdaekkkftadeeelkelDyGkdfYAsqtfed.edk. 259
                      + + +  g +wE p+l++++       +ee+ + l++ ++p ++ + +s + yf+g+f  ++++f+a ++ ++  D Gkd YA q f++ +d+ 
       CCE27815.1 242 TGTGT-LGAQWETPNLVRMPYYnrrgeREEDMWLLLIGINPGAP-KAGSGAEYFLGSF--NGTHFSAVDGATRLPDFGKDNYAGQYFYQqSDDd 331
                      ***97.8************9988888766778999999999555.5************..9****9999999999*************963346 PP

                      CEEEEEEES-TTTHCCCCC...CTEE-EE--EEEEEES- CS
  Glyco_hydro_32N 260 rriligWmgewdseeadvp..ekgwagalslpReltlkd 296
                      + +++ W+++w+++ + vp  +++w+++ slpR+  l++
       CCE27815.1 332 EPVFMTWASNWQYT-KAVPtgHEDWRSVTSLPRRTYLTK 369
                      99***********7.7777799***********988855 PP

>> Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.1   2.4e-11   2.2e-07      74     140 ..     457     523 ..     392     540 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 2.4e-11
                      EEEEE-TTSG...GTTT----.EEEE---...-EEEEEEEETTEEEEEET.TTEEEEEE--..TTTTEE CS
  Glyco_hydro_32C  74 slvvdRtksgetdfkndfasg.esaplel.dgklkLrilvDkssvEvFvndGrtaiTsrvyPtedstgi 140
                       +++dR     + f+n f ++  s +  + dgk ++  + D+s+vEvF n+G   +Ts+++P+++ t +
       CCE27815.1 457 DFYLDRGGA--QAFDNVFFTDkFSTNSYAtDGKWSMSGVFDRSIVEVFLNGGIDSVTSIFFPKKPLTVM 523
                      566677666..446777777767777666899*******************************886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3876.84
//
Query:       CCE27816.1  [L=493]
Description: related to SUC2-invertase (sucrose hydrolyzing enzyme) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-68  230.3   5.3    5.2e-68  229.8   5.3    1.2  1  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom
    2.1e-07   31.1   0.1    3.7e-07   30.3   0.1    1.3  1  Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
     0.0059   16.5   0.2      0.021   14.7   0.2    1.9  1  NTP_transf_9     Domain of unknown function (DUF427)


Domain annotation for each model (and alignments):
>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.8   5.3   8.7e-72   5.2e-68       9     303 ..       1     307 [.       1     309 [. 0.91

  Alignments for each domain:
  == domain 1  score: 229.8 bits;  conditional E-value: 8.7e-72
                      EEEEEEEEE.CTTEEEEEEEEETTSSSS-SBEEEEEEESSSSSBEEEEEEE-SSSGGCTTEEEEEEEEE-TT-...........EEEEEEEE-T CS
  Glyco_hydro_32N   9 lNDPnglvy.ykgeYhlFYqynpkgavwgnisWghavSkDlvhWeelpvalapdeefdsngafSGsavvdddk...........lvllYTgnvk 90 
                      +NDPng++   +g +h++Yqynp +++ gn +Wgha+S Dl hW+++p+al p+++     + SGsavvd ++           +v++YT +  
       CCE27816.1   1 MNDPNGMFRdADGIWHYYYQYNPASTNPGNQHWGHATSPDLYHWTNQPPALFPKDNLF---ILSGSAVVDVNNtsgffpnqtngVVAIYTVIEI 91 
                      9*******989*******************************************8777...9**********99****************9866 PP

                      ....CSEEEEEEEEESSTTSSEEE-TT--SB-.-TTTSTTSEEEEEEEEETTTEEEEEEEECCTTCCEEEEEEESSSSSEEEECCESEECC.TT CS
  Glyco_hydro_32N  91 ....eeeqvQnlayskdkgreftkyeenpviaekpeentkhfRDPkvawkedgkwvmvvgaqdkkkgkillYkskdlkewelaselleskkekg 180
                          + +q+Q++ays+d g++ft ye np+i++    ++k+fRDPk++w+e ++wvm+++     + +i +Y+s +l++w++as+++   +  g
       CCE27816.1  92 knnvTGAQQQSMAYSHDGGYHFTPYECNPIIPS----TSKEFRDPKIIWYE-DHWVMAISYAA--DFAIGIYTSPNLIDWTHASNFTGIGT-LG 177
                      6765559*************************7....799*********98.89********9..99*******************99997.8* PP

                      TEEEEEEEEEEECS.....TT-ECEEEEEEEEC.STTTTTTEEEEEEEEEETTTTEEEECCCCCEESBSSSS-EEEEEECC.TTT.CEEEEEEE CS
  Glyco_hydro_32N 181 gmwEcpdlfeldek.....deeekvklvlkvspqgledntsqdyyfigkfdaekkkftadeeelkelDyGkdfYAsqtfed.edk.rriligWm 267
                       +wE p+l++++       +ee+ + l+l ++p +++  +s ++yf+g+f  ++++fta ++ ++ lD Gkd YA q f++ +d+ + +++ W+
       CCE27816.1 178 AQWETPNLLRMPYYnrrgeREEDMWLLLLGINPGAPK-AGSGTQYFLGSF--NGTHFTAVDHVARLLDFGKDNYAGQYFYQlSDDdEPVFMTWA 268
                      ***********9888888766788999******5555.************..9****9999999*****************84445******** PP

                      S-TTTHCCCCC...CTEE-EE--EEEEEES-..TSSSEEE CS
  Glyco_hydro_32N 268 gewdseeadvp..ekgwagalslpReltlkd..sgkkLvq 303
                      ++w++  +  p  +++w+++ +lpR+  +++   + kLv+
       CCE27816.1 269 SNWQYA-EVAPtaHEEWRSTTALPRRTYITKdaVDWKLVS 307
                      *****6.5555689***********988855344555555 PP

>> Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   6.2e-11   3.7e-07      74     140 ..     386     452 ..     363     470 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 6.2e-11
                      EEEEE-TTSG...GTTT----.EEEE---...-EEEEEEEETTEEEEEET.TTEEEEEE--..TTTTEE CS
  Glyco_hydro_32C  74 slvvdRtksgetdfkndfasg.esaplel.dgklkLrilvDkssvEvFvndGrtaiTsrvyPtedstgi 140
                       +++dR     + f+n f ++  s +  + dg+ ++  + D+s+vEvF n+G   +Ts+++P+e+ t +
       CCE27816.1 386 DFFLDRGGA--QGFDNVFFTDkFSINSYAtDGEWSMSGVFDRSIVEVFLNGGIDSVTSIFFPKEPLTVM 452
                      577888877..458888888888888888999*******************************986655 PP

>> NTP_transf_9  Domain of unknown function (DUF427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   3.6e-06     0.021       5      65 ..     271     351 ..     267     377 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.6e-06
                   -SS-EEEEES--EEEEETTS--EEEB-GGGB-GG....................GEEEEEEEEEETTTEEEEEEEEEETTE CS
  NTP_transf_9   5 lngtvvaetddavvveetglppryYfppedvkle....................llkpsdtttvCpwKGeasyyslavdgk 65 
                   ++ + va t +  +   t lp r Y+++++v+++                     +++++t  +C+   +a y++++v+g 
    CCE27816.1 271 WQYAEVAPTAHEEWRSTTALPRRTYITKDAVDWKlvsapydlspvmgetlleesAVNETTTVDFCEIESNAVYWEVNVTGV 351
                   666678889999999999*******************************99988888889999*************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3494.34
//
Query:       CCE27817.1  [L=545]
Description: related to SUC2-invertase (sucrose hydrolyzing enzyme) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-72  243.0   2.4    7.8e-72  242.4   2.4    1.3  1  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom
    1.1e-06   28.7   0.1    2.2e-06   27.8   0.1    1.5  1  Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal


Domain annotation for each model (and alignments):
>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.4   2.4   8.6e-76   7.8e-72       1     296 [.      39     344 ..      39     357 .. 0.91

  Alignments for each domain:
  == domain 1  score: 242.4 bits;  conditional E-value: 8.6e-76
                      SB--SSEEEEEEEEEEE.CTTEEEEEEEEETTSSSS-SBEEEEEEESSSSSBEEEEEEE-SSSGGCTTEEEEEEEEE-TT-...........EE CS
  Glyco_hydro_32N   1 HfqppkgwlNDPnglvy.ykgeYhlFYqynpkgavwgnisWghavSkDlvhWeelpvalapdeefdsngafSGsavvdddk...........lv 82 
                      Hf+ppkg++NDPng++   +g +h++Yqynp+g v gn +Wgha+S Dl hW+++p+al+p +  d+  + +Gsavvd ++           +v
       CCE27817.1  39 HFTPPKGFMNDPNGMFRdSDGLWHYYYQYNPTGLVPGNQHWGHATSPDLYHWTNQPIALYPPK--DNLFVLTGSAVVDVNNtsgffpnqkngVV 130
                      ****************989******************************************97..7779***********99**********9* PP

                      EEEEEE-T...CS.EEEEEEEEESSTTSSEEE-TT--SB-.-TTTSTTSEEEEEEEEETTTEEEEEEEECCTTCCEEEEEEESSSSSEEEECCE CS
  Glyco_hydro_32N  83 llYTgnvk...ee.eqvQnlayskdkgreftkyeenpviaekpeentkhfRDPkvawkedgkwvmvvgaqdkkkgkillYkskdlkewelasel 172
                      +++T   +   +   q+Q++ays d g++f  y+ +pvi++      ++fRDPkv+w++ ++wvm+v+ +     ++ +Y+s +l++w++as++
       CCE27817.1 131 AFFTLGETdngKPgPQQQSIAYSLDGGYHFIPYS-HPVIPS----DLTQFRDPKVVWYK-DHWVMAVAYSA--GFTVGIYTSPNLIDWTHASNF 216
                      ***965555775569*****************77.9***97....689*********98.89*********..899****************** PP

                      SEECC.TTTEEEEEEEEEEECS.....TT-ECEEEEEEEEC.STTTTTTEEEEEEEEEETTTTEEEECCCCCEESBSSSS-EEEEEECC..TTT CS
  Glyco_hydro_32N 173 leskkekggmwEcpdlfeldek.....deeekvklvlkvspqgledntsqdyyfigkfdaekkkftadeeelkelDyGkdfYAsqtfed..edk 259
                      +   +  g+ wEcp+l++++       + e+k+ l+l ++p +++ ++s + y++g+f  ++++f + +  ++ +D Gkd YA q f++  ed+
       CCE27817.1 217 TGVGS-IGVEWECPNLVRMPAFnhlgeKVEDKWLLLLGINPGAPK-GGSGAEYYLGSF--NGTHFIPVDLVTRSVDFGKDNYAGQYFYQqsEDD 306
                      99997.7*************988899877899*********5555.************..9****999999*****************954444 PP

                      CEEEEEEES-TTTHCCCCC...CTEE-EE--EEEEEES- CS
  Glyco_hydro_32N 260 rriligWmgewdseeadvp..ekgwagalslpReltlkd 296
                        +++ W+++w+++ ++vp  +++w++a +lpR+  l++
       CCE27817.1 307 VPVFMTWASNWQYT-QSVPteQEEWRSATALPRRTYLRK 344
                      899**********6.77887999**********999966 PP

>> Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   2.4e-10   2.2e-06      73     142 ..     435     506 ..     371     523 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.4e-10
                      TEEEEE-TTSG...GTTT----.EEEE---...-EEEEEEEETTEEEEEET.TTEEEEEE--..TTTTEEEE CS
  Glyco_hydro_32C  73 sslvvdRtksgetdfkndfasg.esaplel.dgklkLrilvDkssvEvFvndGrtaiTsrvyPtedstgirl 142
                      + +++dR      d++n f ++  s +  + dgk ++  ++D+s++E+F  +G   iTs+++P+e+ t + +
       CCE27817.1 435 NDFYLDRGGAQPFDNDNIFFTDkFSNNSFPaDGKWSMSGVLDRSIIEIFLTGGIDSITSIFFPKEPLTVLTF 506
                      556667766643333455555555544444699*******************************99666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3849.56
//
Query:       CCE27818.1  [L=702]
Description: related to AKR1-ankyrin repeat-containing protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-27   96.2   0.0    3.8e-13   49.8   0.0    3.5  2  Ank_2     Ankyrin repeats (3 copies)
    8.5e-24   83.3   0.2      3e-06   27.4   0.0    4.9  5  Ank_5     Ankyrin repeats (many copies)
    2.1e-23   82.4   2.3    2.3e-06   28.0   0.2    4.8  4  Ank_4     Ankyrin repeats (many copies)
    6.3e-22   75.3   2.2    2.8e-07   30.3   0.0    5.8  5  Ank_3     Ankyrin repeat
    1.8e-21   75.6   0.7    1.4e-05   25.3   0.0    5.8  5  Ank       Ankyrin repeat
      1e-13   51.5  10.4      1e-13   51.5  10.4    2.0  2  DHHC      DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   1.3e-16   3.8e-13       2      83 .]      69     162 ..      68     162 .. 0.79
   2 !   41.9   0.0   3.9e-14   1.2e-10       1      78 [.     169     256 ..     169     261 .. 0.87

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 1.3e-16
       Ank_2   2 hlAakngnlelvklLl..egadpn..k.ngktaLhyAakngnleivklLleh...ad....ndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 ++ a+ g+  +++ L    ++d+   + +g t+Lh+Aa+n++  ++k+L+eh   ++    ++  tpL++Aa+  h+ +v+lLl++gad+ + d
  CCE27818.1  69 MQLARVGDIVAMEKLFesGEFDATysDdEGITPLHWAAINNQYAMCKFLIEHgaeINrkggDSVATPLQWAAQRCHYYTVNLLLQHGADPLISD 162
                 5666666566788888533355546427**************9********99774455556667*******99***************97765 PP

  == domain 2  score: 41.9 bits;  conditional E-value: 3.9e-14
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLle.....h.adndgrtpLhyAarsghleivklLlekgad 78 
                 Lh+   ngn  l+ lLl +g  ++  +  g+t L++Aa +g+  +v  +l      h +d++g t+Lh+A  +g++ ++  L+e+gad
  CCE27818.1 169 LHISTFNGNVLLIVLLLhQGIPVDvlDtYGHTSLMWAAYKGYPACVDVFLRwgasvHaTDEQGFTALHWALVKGNPGCILKLIEYGAD 256
                 7999999988777777788877777657**********************8776555888**************************98 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     2e-09   5.9e-06       8      54 ..      90     137 ..      87     139 .. 0.92
   2 !    5.5   0.0    0.0077        23       1      22 [.     151     171 ..     151     172 .. 0.92
   3 !   17.3   0.0   1.5e-06    0.0045       1      36 [.     184     218 ..     184     222 .. 0.87
   4 !   27.4   0.0     1e-09     3e-06       7      52 ..     222     267 ..     219     271 .. 0.95
   5 ?   -3.8   0.0         6   1.8e+04      40      53 ..     512     525 ..     511     525 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 2e-09
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG.ltald 54 
                 d  ++d +g tpLh+Aa ++   ++++L+++ga +n + ++   t+l+
  CCE27818.1  90 DATYSDDEGITPLHWAAINNQYAMCKFLIEHGAEINRKGGDSvATPLQ 137
                 5678999*******************************9999999987 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0077
       Ank_5   1 LlehgpadvnrldgggntpLhv 22 
                 Ll+hg ad+  +d  g++ Lh+
  CCE27818.1 151 LLQHG-ADPLISDAQGYNTLHI 171
                 899*9.**************98 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 1.5e-06
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLl 36 
                 Ll+ g p+dv ++ g+  t L++Aa++g++ +v ++l
  CCE27818.1 184 LLHQGiPVDVLDTYGH--TSLMWAAYKGYPACVDVFL 218
                 7888978888777777..***************9998 PP

  == domain 4  score: 27.4 bits;  conditional E-value: 1e-09
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                 a+v ++d+ g+t+Lh+A  +g++ ++++L+++gad+++++ +G+t+
  CCE27818.1 222 ASVHATDEQGFTALHWALVKGNPGCILKLIEYGADRFAQTQSGKTP 267
                 7899*****************************************9 PP

  == domain 5  score: -3.8 bits;  conditional E-value: 6
       Ank_5  40 adlnltdsrGltal 53 
                 a ++l +++G+t+l
  CCE27818.1 512 AFCKLINADGYTLL 525
                 67899999999986 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0     1e-09   3.1e-06       3      43 ..     100     140 ..      98     141 .. 0.86
   2 !   28.0   0.2   7.6e-10   2.3e-06       3      53 ..     134     183 ..     132     185 .. 0.91
   3 !   14.2   0.0   1.7e-05     0.051      12      55 .]     176     218 ..     176     218 .. 0.92
   4 !   23.0   0.0   2.8e-08   8.4e-05       3      55 .]     200     251 ..     199     251 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1e-09
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGe...talhiAa 43 
                 t+Lh+aai +++ ++++L+e+ga+in+     G+   t+l+ Aa
  CCE27818.1 100 TPLHWAAINNQYAMCKFLIEHGAEINRK---GGDsvaTPLQWAA 140
                 89*************************9...4443358999998 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 7.6e-10
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilkl 53 
                 t+L +aa+ +++ +v lLl++gad+  + +++G + lhi   +gnv  + l
  CCE27818.1 134 TPLQWAAQRCHYYTVNLLLQHGADPLIS-DAQGYNTLHISTFNGNVLLIVL 183
                 89*************************9.****************855555 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 1.7e-05
       Ank_4  12 grlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 g++ l+ lLl +g+ ++   + +G t l  Aa++g++ ++  +l
  CCE27818.1 176 GNVLLIVLLLHQGIPVDVL-DTYGHTSLMWAAYKGYPACVDVFL 218
                 67778999**99******9.********************9886 PP

  == domain 4  score: 23.0 bits;  conditional E-value: 2.8e-08
       Ank_4   3 taLhyaaisgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t L +aa++g   +v+  l + ga+++a+ +++G+talh A+ +gn+ ++  L+
  CCE27818.1 200 TSLMWAAYKGYPACVDVFL-RwGASVHAT-DEQGFTALHWALVKGNPGCILKLI 251
                 6799***************.77*******.****************99987765 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   9.5e-11   2.8e-07       1      30 [.      97     125 ..      97     126 .. 0.95
   2 !   11.3   0.0   0.00015      0.44       4      30 ..     134     159 ..     133     160 .. 0.92
   3 ?    2.7   0.0      0.09   2.7e+02       6      30 ..     169     192 ..     164     193 .. 0.76
   4 !   12.2   0.0   7.5e-05      0.22       1      30 [.     197     225 ..     197     226 .. 0.94
   5 !   13.5   0.0   2.7e-05      0.08       2      28 ..     231     256 ..     230     257 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 9.5e-11
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G tpLh+Aa ++ ++++kfL+e +ga++n
  CCE27818.1  97 EGITPLHWAAINNQYAMCKFLIE-HGAEIN 125
                 599********************.9***99 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00015
       Ank_3   4 tpLhlAarsgnl.eivkfLlenkgadvn 30 
                 tpL +Aa  +++ + v +Ll+ +gad+ 
  CCE27818.1 134 TPLQWAAQRCHYyT-VNLLLQ-HGADPL 159
                 9***********88.******.9***85 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.09
       Ank_3   6 LhlAarsgnleivkfLlenkgadvn 30 
                 Lh+   +gn+  ++ Ll + g++v+
  CCE27818.1 169 LHISTFNGNVL-LIVLLLHQGIPVD 192
                 8999999***8.6666666999987 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 7.5e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G t L++Aa  g ++ v+ +l+ +ga v+
  CCE27818.1 197 YGHTSLMWAAYKGYPACVDVFLR-WGASVH 225
                 699************99******.9**997 PP

  == domain 5  score: 13.5 bits;  conditional E-value: 2.7e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 G t+Lh+A+  gn+  +  L+e +gad
  CCE27818.1 231 GFTALHWALVKGNPGCILKLIE-YGAD 256
                 88************88******.9*98 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   4.8e-09   1.4e-05       2      29 ..      98     126 ..      97     128 .. 0.88
   2 !   12.0   0.1   7.6e-05      0.23       4      31 ..     134     162 ..     133     163 .. 0.90
   3 ?    3.6   0.1     0.035     1e+02       3      30 ..     166     194 ..     164     196 .. 0.75
   4 !   14.9   0.0   9.3e-06     0.028       1      31 [.     197     228 ..     197     229 .. 0.92
   5 !   13.0   0.0   3.6e-05      0.11       2      31 ..     231     261 ..     230     262 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 4.8e-09
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlna 29 
                 G TPLH+Aa n++  ++k+L+ hGA++n 
  CCE27818.1  98 GITPLHWAAINNQYAMCKFLIeHGAEINR 126
                 99*******666688************96 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 7.6e-05
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 TPL +Aa++ +   + lLL hGA++ + d
  CCE27818.1 134 TPLQWAAQRCHYYTVNLLLqHGADPLISD 162
                 9******999999******99***97765 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.035
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnal 30 
                 +  LH+   ng++  i lLL +G  ++ l
  CCE27818.1 166 YNTLHISTFNGNVLLIVLLLhQGIPVDVL 194
                 5559**669999999999**669656655 PP

  == domain 4  score: 14.9 bits;  conditional E-value: 9.3e-06
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +G+T L++Aa+ g + ++  +L  GA+++a+d
  CCE27818.1 197 YGHTSLMWAAYKGYPACVDVFLrWGASVHATD 228
                 69********9999********55******99 PP

  == domain 5  score: 13.0 bits;  conditional E-value: 3.6e-05
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+T+LH+A   g++ +i  L+ +GA+  a++
  CCE27818.1 231 GFTALHWALVKGNPGCILKLIeYGADRFAQT 261
                 9******9977777799779*99**987765 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   2.0       3.4     1e+04      71      71 ..     394     394 ..     314     430 .. 0.56
   2 !   51.5  10.4   3.4e-17     1e-13      35     132 ..     457     559 ..     456     561 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.4
        DHHC  71 i 71 
                 +
  CCE27818.1 394 T 394
                 1 PP

  == domain 2  score: 51.5 bits;  conditional E-value: 3.4e-17
        DHHC  35 hCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkk.....llsilllvlsllfllllgllllfhlylilrnlTti 128
                 hCpw+ nciG +N+++F+l+l++l+l ++ + +++++++  +  +++++ +   + + k      +++ll+++  l l+++++l++++l++++r +Tt 
  CCE27818.1 457 HCPWVYNCIGINNHRHFFLYLVCLTLGILSYDWIIYYYFDLISAKSSETCAVFGPAFCKlinadGYTLLLTIWTNLQLVWVTMLVFTQLVQVSRAMTTF 555
                 ********************************************999999999999988999998889999**************************** PP

        DHHC 129 eamk 132
                 e+m 
  CCE27818.1 556 ENMT 559
                 *995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4816.62
//
Query:       CCE27819.1  [L=306]
Description: related to SRP102-signal recognition particle receptor, beta chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-26   91.0   0.0    1.6e-18   66.8   0.0    2.5  2  SRPRB        Signal recognition particle receptor beta subuni
    0.00013   21.5   0.1       0.31   10.5   0.0    2.8  3  Arf          ADP-ribosylation factor family
    0.00014   21.9   0.0    0.00022   21.3   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.035   14.3   0.0       0.12   12.6   0.0    1.9  2  Roc          Ras of Complex, Roc, domain of DAPkinase
      0.036   14.0   0.9       0.39   10.6   0.5    2.5  3  RsgA_GTPase  RsgA GTPase
       0.06   13.7   0.5      0.086   13.2   0.5    1.5  1  AAA_16       AAA ATPase domain
       0.11   13.0   0.0       0.25   11.9   0.0    1.6  1  RTC_insert   RNA 3'-terminal phosphate cyclase (RTC), insert 
       0.18   11.2   0.0       0.29   10.5   0.0    1.3  1  TniB         Bacterial TniB protein


Domain annotation for each model (and alignments):
>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   4.5e-08    0.0001       4      49 ..      47      95 ..      44      99 .. 0.84
   2 !   66.8   0.0   7.2e-22   1.6e-18      45     176 ..     116     273 ..      90     277 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.5e-08
                -EEEEE-STTSSHHHHHHHHHHS..S---B---S.S-EEETTG...GGT CS
       SRPRB  4 pavllvGlsdsGKTslftrLttd..svkktvtSq.essaalkvksekgs 49
                p++ll+G+s++GKTsl+t+L  +  ++ +t tSq   s+ l+v+++  s
  CCE27819.1 47 PTILLLGPSHAGKTSLLTLLERGgtETPDTHTSQvSHSVELEVTTDASS 95
                89********************9888889*****777888888666555 PP

  == domain 2  score: 66.8 bits;  conditional E-value: 7.2e-22
                 ..GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHH.......HHHHHHHHHHHHHHHHHH....TT........---EEEEEE-TTS CS
       SRPRB  45 sekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpke.......vkevAEllyeillitekl....kd........avdiliACnKqel 124
                 +   +k+ l+D PG  klr+  + kl   ++l+g+vf+vD+++   +       + ++A +ly++ll  +++    kd        av++l+A nK +l
  CCE27819.1 116 GGTYTKFLLVDTPGYGKLRNVAMGKLGRVDKLRGVVFMVDAAALGERdrerdgsLASTAAYLYDVLLYLQQRqtsqKDkgkgkgkgAVPVLVAANKMDL 214
                 44567899*********************************9953221223344889*********8655431111222222222279*********** PP

                 TT---HHHHHHHHHHHHHHHHHCHHHHHH--......----T....T----.----GGG CS
       SRPRB 125 flakspklikdaLEkElnkiierrskalkel......deeedksavlakkg.kdFkfdq 176
                 f+a +++l+k +LE+El  i+ +rsk l          ++ed+ + l++ g ++F f q
  CCE27819.1 215 FTALPANLVKTQLERELSSIRATRSKGLLDSgvgddeVGTEDQDSWLGEYGsEKFSFGQ 273
                 ***************************99887786554566667777776514577766 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0013         3      14      41 ..      46      73 ..      33      91 .. 0.73
   2 ?   -0.2   0.0      0.27     6e+02      80      93 ..     145     158 ..     119     175 .. 0.74
   3 !   10.5   0.0   0.00014      0.31     115     149 ..     202     238 ..     184     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0013
                EEEEEEEESTTSSHHHHHHHHHHSSCEE CS
         Arf 14 elrilllGLDnaGKtTilkklkleelvt 41
                   illlG   aGKt +l+ l+ + ++t
  CCE27819.1 46 PPTILLLGPSHAGKTSLLTLLERGGTET 73
                5679**************9998876554 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.27
                 TTESEEEEEEETT- CS
         Arf  80 ektdavifvvDsad 93 
                 +k  +v+f+vD+a 
  CCE27819.1 145 DKLRGVVFMVDAAA 158
                 567799*****975 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00014
                 TSEEEEEEE-TTSTTSS-HHHHHHHTT..GGGSSSSS CS
         Arf 115 evallvlaNKqDlpealseeelrellg..leelkgkr 149
                  v++lv aNK+Dl +al ++ ++++l+  l++++++r
  CCE27819.1 202 AVPVLVAANKMDLFTALPANLVKTQLEreLSSIRATR 238
                 689******************9999962255576555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   9.6e-08   0.00022       2      87 ..      49     164 ..      48     211 .. 0.62

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 9.6e-08
                 EEEEESTTSSHHHHHHHHHT........STEEESSST..TSSSSE.EEEEEEETTEE...................EEEEECGGCSSHHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg........ekaivsdkp..gtTrdi.negrvklkgke...................ielvDtpGliegaseekglgkaf 70 
                 ++++G + +GK++L+  l +         +++vs+     +T+d    +  ++   +                   + lvDtpG +   + ++    ++
  CCE27819.1  49 ILLLGPSHAGKTSLLTLLERggtetpdtHTSQVSHSVelEVTTDAsSSFASST---KgsfrnqgdasgsaggtytkFLLVDTPG-YG--KLRNVAMGKL 141
                 789************99976444444431333333222244444413333332...03344455556666666666********.98..4444444455 PP

                 HHHHCTSEEEEEEETT......T CS
    MMR_HSR1  71 laleeadlillvvdas......e 87 
                  ++++   ++++vda+      +
  CCE27819.1 142 GRVDKLRGVVFMVDAAalgerdR 164
                 5577799*******875544330 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.5e-05      0.12       2      38 ..      49      85 ..      48     101 .. 0.81
   2 ?   -1.5   0.0       1.3   2.8e+03     107     119 ..     201     213 ..     184     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.5e-05
                EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEE CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdflt 38
                ++l+G s++GKtsll+ + ++  ++  + t +v+ + 
  CCE27819.1 49 ILLLGPSHAGKTSLLTLLERGGTETPDTHTSQVSHSV 85
                89**************999999888888888877643 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
                 SSS-EEEEEE-TT CS
         Roc 107 gkspvilvgnkiD 119
                 g  pv++ +nk+D
  CCE27819.1 201 GAVPVLVAANKMD 213
                 456899999**99 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   0.00018      0.39      98     144 ..      45      95 ..      34     107 .. 0.70
   2 ?   -1.1   0.0      0.71   1.6e+03     154     163 ..     123     132 ..     117     134 .. 0.79
   3 ?   -0.4   0.0      0.41   9.1e+02      47      69 ..     203     224 ..     199     241 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
                  TTSEEEEECSTTSSHHHHHHHHCTT....-----S--------------SE CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpe....lelktgevseklgrGkhTTtav 144
                  +  t++l+G+S +GK++L+  l        +++t++vs++ +    T  ++
   CCE27819.1  45 TPPTILLLGPSHAGKTSLLTLLERGgtetPDTHTSQVSHSVELEVTTDASS 95 
                  456899****************87433334888999998876644444333 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.71
                  EEESS-SSSS CS
  RsgA_GTPase 154 lliDtPGfre 163
                  ll+DtPG  +
   CCE27819.1 123 LLVDTPGYGK 132
                  79*****765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.41
                  -EEEEEEE-GGG--HHHHHHHHH CS
  RsgA_GTPase  47 iepvivlnKiDlleeeeeleelk 69 
                  ++++++ nK+Dl +    ++ +k
   CCE27819.1 203 VPVLVAANKMDLFTALP-ANLVK 224
                  68899999***998876.44333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.5   3.8e-05     0.086      12      46 ..      33      68 ..      31     232 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
      AAA_16 12 Llsalervrsgrp.elvllsGesGvGKsslvrellr 46
                L+++l + ++ ++ + +ll G+s  GK+sl++ l r
  CCE27819.1 33 LHTVLAASSTYTTpPTILLLGPSHAGKTSLLTLLER 68
                55666655555557*****************98875 PP

>> RTC_insert  RNA 3'-terminal phosphate cyclase (RTC), insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.25       4      67 ..     142     209 ..     140     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                 ---SEEEEEEEEES.S-THHHHHHHHHHHHHHTTTSSEEEEEEE..EE-CGGC-SS-..EEEEEEEEE CS
  RTC_insert   4 GrvkrirGvafaar.vspsvanrmveaargvLnkllpdvyiytdv.vkegkesgksp..GfgisLvae 67 
                 Grv + rGv+f++         r  ++  +   ++l+dv  y+++ + ++k++gk++  G+  +Lva 
  CCE27819.1 142 GRVDKLRGVVFMVDaAALGERDRERDGSLASTAAYLYDVLLYLQQrQTSQKDKGKGKgkGAVPVLVAA 209
                 9*************566667789999999999************977777776666511666667665 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00013      0.29      32      70 ..      43      81 ..      32      97 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
        TniB 32 rkrmpnlllvGdsnnGKtmivekFarlhppekdedaekv 70
                 + +p +ll+G+s+ GKt+++   +r  ++++d+++++v
  CCE27819.1 43 YTTPPTILLLGPSHAGKTSLLTLLERGGTETPDTHTSQV 81
                567899***************999999988888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2347.68
//
Query:       CCE27820.1  [L=515]
Description: probable CYS4-cystathionine beta-synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-65  220.9   0.3    3.5e-65  220.3   0.3    1.3  1  PALP      Pyridoxal-phosphate dependent enzyme
    2.4e-11   43.9   0.1    6.1e-08   33.0   0.0    3.2  3  CBS       CBS domain


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.3   0.3   3.9e-69   3.5e-65       2     294 .]      19     317 ..      18     317 .. 0.92

  Alignments for each domain:
  == domain 1  score: 220.3 bits;  conditional E-value: 3.9e-69
                 GGCSSS--EEEECCTCCCCCCE..EEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHH CS
        PALP   2 tlgigpTPlvrlprlskelgvp..lflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekva 95 
                 t  ig+TPlvrl+++ + lg++  +++K E++n +gS+KdR a  +++++++    ++++t++e +sGN+g++lA+++a  G+k +i +p+++s+ekv 
  CCE27820.1  19 TELIGNTPLVRLNKVPQSLGIEceVYAKTEFFNAGGSVKDRIALRMVEQAEKSgriKPGDTLIEPTSGNTGIGLALIGAIKGYKTIITMPEKMSAEKVS 117
                 5789*********************************************88888********************************************* PP

                 HHHHTT-EEEEECCH..HHHHHHH...HHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEE CS
        PALP  96 llrllGaevvevggd..ydeavaa...aaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvi 188
                  lr+lGa+++++++   +d+ +++   a++l++e ++a++++q++n ++ ++    +++Ei+eq+ggk++a+v+++G+Gg+i+Gia+glk+++ d++vi
  CCE27820.1 118 VLRALGATIIRTPTQaaWDAPESHigvARRLEKEMPNAHILDQYGNADNPLAhELGTAQEIWEQTGGKITALVAGAGTGGTITGIARGLKKHNKDIKVI 216
                 ************55555888888888799***********************999******************************************** PP

                 EEEECTTCGGTTCCS..S.SS..B.SSS.CCSTCS.CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCTTC CS
        PALP 189 gvepegsdalarslragrrvtvpvsdtiadglavg.spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelkeg 285
                 +++p gs      +     ++   ++  ++g++ +  p +l  e++d+  +     +d++ +  +r+l ++eg++v+ ss+ a+ a+ k+++   l++g
  CCE27820.1 217 AADPHGSILALPEV---LNQEHVNESYKVEGIGYDfIPNVLEREIVDKWYK----TDDQDSFVLARRLISEEGLLVGGSSGSAMSAMvKAVKEFGLGKG 308
                 *****777655555...2333344489999**9998888888888876666....******************************************** PP

                 EEEEEEE-B CS
        PALP 286 drvvviltg 294
                 d+vvv+l++
  CCE27820.1 309 DVVVVVLPD 317
                 999999975 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   6.8e-12   6.1e-08       7      56 ..     369     418 ..     363     419 .. 0.91
   2 ?   -1.4   0.0      0.37   3.3e+03      12      31 ..     422     439 ..     421     446 .. 0.73
   3 !    7.0   0.0   0.00087       7.8       7      56 ..     459     512 ..     457     513 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 6.8e-12
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllrall 56 
                 ++v +v  +++ +ea+e+mr+kg+++lPV+ ++ klvG+vtl  ll +++
  CCE27820.1 369 KPVTSVIDTASCSEAIETMRDKGFDQLPVLSSSSKLVGLVTLGNLLAYIS 418
                 677788899*********************88999***********9986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.37
                 EETTSBHHHHHHHHHHHTSS CS
         CBS  12 vppdttleealelmrekgvs 31 
                 ++p +++++++  +   +++
  CCE27820.1 422 ATPHSPVKDVMFHF--GRLD 439
                 579999***99888..4455 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.00087
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEEE.....ETTT..BEEEEEEHHHHHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPVV.....dedg..klvGivtlrDllrall 56 
                 r++v ++ dt+l+ + + + e   ++  VV     d++   k++ +vt+ Dll +++
  CCE27820.1 459 RKFVEITIDTPLSTLSKFL-E--WNSAAVVtercaDKNAlsKPLAVVTKVDLLTWMV 512
                 67889999***********.7..55554777***99888999***********8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 4006.32
//
Query:       CCE27821.1  [L=260]
Description: uncharacterized protein CPUR_01295 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-33  112.8   0.0    7.7e-31  106.5   0.0    2.2  2  TNT       Tuberculosis necrotizing toxin


Domain annotation for each model (and alignments):
>> TNT  Tuberculosis necrotizing toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0034        61       2      25 ..      78     101 ..      77     111 .. 0.87
   2 !  106.5   0.0   4.3e-35   7.7e-31       2      87 ..     117     212 ..     116     213 .. 0.97

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0034
                 ..H-SEEEEES-TT-S-EEEGG-- CS
         TNT   2 LppGtlldRfGseeGrflapagtp 25 
                 L pG+ l R+ +++Grf++p ++ 
  CCE27821.1  78 LCPGEFLKRWTNKDGRFIYPIEDG 101
                 889***************997655 PP

  == domain 2  score: 106.5 bits;  conditional E-value: 4.3e-35
                 ..H-SEEEEES-TT-S-EEEGG---GGGT--GGGGG...........S-EEEEEE.----EEEEEB--BTTB----EEEEEE---HHHHHHTTSEE- CS
         TNT   2 LppGtlldRfGseeGrflapagtpyeeRaLppsnln...........knyhvYevlkpleveaGeiapwfgqpGgGvqyelvkssvkellengyLee 87 
                 L pGtl+dRfG+e+G+flapag +ye R++ppsnl             nyhvY vlkp++++aG iapwf+qpG Gvqy +++s v+  +++g+L++
  CCE27821.1 117 LCPGTLVDRFGGEQGSFLAPAGMRYEARSIPPSNLVtvtrkepnsspFNYHVYMVLKPMQATAGCIAPWFEQPGLGVQYLINGS-VTAAIQEGFLRK 212
                 89*******************************************************************************666.**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1929.90
//
Query:       CCE27822.1  [L=566]
Description: related to SUC2-invertase (sucrose hydrolyzing enzyme) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-66  224.5   5.6    2.9e-66  224.1   5.6    1.2  1  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom
    4.3e-07   30.1   0.0    7.9e-07   29.2   0.0    1.4  1  Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal


Domain annotation for each model (and alignments):
>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.1   5.6   3.2e-70   2.9e-66       1     296 [.      63     371 ..      63     382 .. 0.90

  Alignments for each domain:
  == domain 1  score: 224.1 bits;  conditional E-value: 3.2e-70
                      SB--SSEEEEEEEEEEE.CTTEEEEEEEEETTSSSS-SBEEEEEEESSSSSBEEEEEEE-SSSGGCTTEEEEEEEEE-TT-...........EE CS
  Glyco_hydro_32N   1 HfqppkgwlNDPnglvy.ykgeYhlFYqynpkgavwgnisWghavSkDlvhWeelpvalapdeefdsngafSGsavvdddk...........lv 82 
                      H++ppkg++NDPng++   +g +h++Yqy  ++ +    +Wgha+S Dl hW+++p+al   +  ++  + SGsavvd ++           +v
       CCE27822.1  63 HYSPPKGFMNDPNGMFRdDDGIWHYYYQYKHTQLKPSVSYWGHATSPDLYHWTNQPIALFSPA--HNLFVLSGSAVVDVNNtsgffpnqtngVV 154
                      9***************9789***************************************7665..34469**********99************ PP

                      EEEEEE-T....CSEEEEEEEEESSTTSSEEE-TT--SB-.-TTTSTTSEEEEEEEEETTTEEEEEEEECCTTCCEEEEEEESSSSSEEEECCE CS
  Glyco_hydro_32N  83 llYTgnvk....eeeqvQnlayskdkgreftkyeenpviaekpeentkhfRDPkvawkedgkwvmvvgaqdkkkgkillYkskdlkewelasel 172
                      ++YT           ++Q +ays+d g++ft+ye+npvi++    n+++fRDPkv+w+e ++wv++v+  d+ + +i +Y+s +l++w++as++
       CCE27822.1 155 AIYTLAEFnngvGGPEQQEIAYSHDGGYHFTRYEGNPVIPS----NSTQFRDPKVIWYE-DHWVLAVAYADDFAAAIGFYTSPNLIDWTHASNF 243
                      ****8865666534899***********************7....89**********98.89******************************** PP

                      SEECC.TTTEEEEEEEEEEECS.....TT-ECEEEEEEEEC.STTTTTTEEEEEEEEEETTTTEEEECCCCCEESBSSSS-EEEEEECC.TTT. CS
  Glyco_hydro_32N 173 leskkekggmwEcpdlfeldek.....deeekvklvlkvspqgledntsqdyyfigkfdaekkkftadeeelkelDyGkdfYAsqtfed.edk. 259
                      + + +  g +wE p+l++++       +ee+ + l++ ++p g  + +s   yf+g+f  ++++fta ++ ++ lD Gkd YA q f++ +d+ 
       CCE27822.1 244 TGTGT-LGAQWETPNLVRMPYYnrrgeREEDMWLLLIGINP-GAPTVGSGGAYFLGSF--NGTHFTAVDHVARLLDFGKDNYAGQYFYQlSDDd 333
                      ***97.8************9988888766778999999999.5555************..9****9999999*****************84445 PP

                      CEEEEEEES-TTTHCCCCC...CTEE-EE--EEEEEES- CS
  Glyco_hydro_32N 260 rriligWmgewdseeadvp..ekgwagalslpReltlkd 296
                      + +++ W+++w+++   +p  +++w+++ +lpR+  l++
       CCE27822.1 334 EPVFMTWASNWQYT-MVTPtaHEEWRSVTALPRRTYLTK 371
                      *************7.6666789***********988855 PP

>> Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   8.9e-11   7.9e-07      74     140 ..     459     525 ..     439     542 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 8.9e-11
                      EEEEE-TTSG...GTTT----EEEE---....-EEEEEEEETTEEEEEET.TTEEEEEE--..TTTTEE CS
  Glyco_hydro_32C  74 slvvdRtksgetdfkndfasgesaplel..dgklkLrilvDkssvEvFvndGrtaiTsrvyPtedstgi 140
                      ++++dR     + f+n f +++ a  +   dgk  +  + D+s+vE+F n+G   iTs+++P e+ t +
       CCE27822.1 459 EFYLDRGGA--QGFDNVFFTDKFATNSYatDGKWCMSGVFDRSIVEIFLNGGIDSITSIFFPREPLTVM 525
                      678888877..457788888844444445899*******************************986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3960.20
//
Query:       CCE27823.1  [L=440]
Description: related to lipase 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-71  239.1   0.1    7.8e-71  238.7   0.1    1.1  1  LIP       Secretory lipase


Domain annotation for each model (and alignments):
>> LIP  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.7   0.1   4.3e-75   7.8e-71       8     282 ..     128     395 ..     117     398 .. 0.96

  Alignments for each domain:
  == domain 1  score: 238.7 bits;  conditional E-value: 4.3e-75
         LIP   8 stvatqaelllivplLkeGyyVvvpDyeGpkstftvgrqsgkavLdsiraalksekvtgiksdakvalwGYSgGslAsawAaelqpeYAPelelvGaal 106
                  t+  ++el+++   L+eG+ Vv+pDyeGp++ f      g+avLd++ra l s+++tg+ksda+val GYSgG++A+a+A+elqp+YAPel++vGa +
  CCE27823.1 128 GTIVGEVELIFMDGFLNEGWIVVMPDYEGPEAQFLASTLAGHAVLDGVRALLASTNITGVKSDANVALNGYSGGAVATAAASELQPSYAPELKIVGASI 226
                 4888899******************************************************************************************** PP

         LIP 107 GgfvanltavaeavdgtvfaGlialalnglaneypelkkilkeevneearealeklsencladalikyagesyltgdkrafekgsdvlkdetikkvled 205
                 Gg v++l+ ++ +++ + faGli+  ++gla+ yp + ki++++v  + +e +ek +++c + al+   +++y++       k ++++++e ++ +l+ 
  CCE27823.1 227 GGAVPDLATTILRMNKGPFAGLIPVGVQGLAKAYPVITKIIDDQVLPKYKEGFEKAKTQCSGTALLPNSFTNYFGQ-----VKNQSIFSTEPVTGILKA 320
                 ************************************************************************9887.....57789************* PP

         LIP 206 nklsksavPqiPvlvyhgvidelipikdakklaknwcdkgiaslefaedlssgHlaetlvgapaaltWitdRfsgkp 282
                 n   +++vP++P++ +++ +del pik +++l kn+c++g as+++++d  s+H + +++ga  a  W++  ++g+ 
  CCE27823.1 321 NSQ-GKHVPTMPLYYLQSIHDELTPIKLVDALIKNYCKAG-ASVDYTRDFASDHASLLVTGATHAYPWLKRVLNGEH 395
                 *97.************************************.5****************************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 3001.19
//
Query:       CCE27824.1  [L=106]
Description: uncharacterized protein CPUR_01298 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 781.49
//
Query:       CCE27825.1  [L=731]
Description: related to nitrate assimilation regulatory protein nirA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-12   45.6   1.0    7.3e-12   44.9   1.0    1.4  1  Fungal_trans  Fungal specific transcription factor domain
      4e-09   36.4   8.7    6.8e-09   35.7   8.7    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   1.0   8.2e-16   7.3e-12       2     201 ..     225     415 ..     224     472 .. 0.72

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 8.2e-16
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                    ++f + hp f  l ++ +l+++    ++k++y+s+ll +a lal++++s+ ++ ++++     + +   f+++ + l+    ++   +l+++q+L 
    CCE27825.1 225 ALYFCWEHPTFASLSREHYLRDF---HDGKTRYCSALLTNALLALASRLSSRPELRTEAGPPAGQ-Q---FFQECQRLY--LDETDHHQLTTVQALG 312
                   5899999****************...*******************************88888876.4...555555556..56677777******** PP

  Fungal_trans  99 llelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaes...rrRlwwaaFylDktialklGrpp..llddsqinlp.LPcdd 189
                   +++l e  ++  ++ e++ g  +rla ++gLh+ +s         ++eee +       ++w+aF l   +++    p    +++  i+lp +   +
    CCE27825.1 313 IMSLREVSCGHVSASEYYAGQCIRLALEMGLHELQSLDT------RDEEEMQDrtvKLATFWGAFALNNALSFAGSLPRtsSMPCLPIELPtIEALE 403
                   ********************************9999988......4544333312223679999999888888777777434555555554433334 PP

  Fungal_trans 190 ddlwesddasee 201
                    + w+ ++++ +
    CCE27825.1 404 AHPWIPYTDDDV 415
                   444444444444 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   8.7   7.6e-13   6.8e-09       1      35 [.      44      76 ..      44      81 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 7.6e-13
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCT CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfyse 35
                haC++Crkk+vKCd+k   Cs+Ck++  eC  y+ 
  CCE27825.1 44 HACTECRKKRVKCDGKLA-CSRCKSYDIECI-YTA 76
                8*****************.************.875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5096.09
//
Query:       CCE27826.1  [L=168]
Description: uncharacterized protein CPUR_01300 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1194.97
//
Query:       CCE27827.1  [L=707]
Description: related to F-box/WD-repeat protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-33  111.8  18.1    8.4e-07   29.6   0.0    8.1  9  WD40           WD domain, G-beta repeat
    1.5e-08   34.4   1.3    3.2e-08   33.3   1.3    1.6  1  F-box-like     F-box-like
    1.3e-07   31.8   0.3     0.0076   16.5   0.0    5.0  6  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    9.8e-07   28.5   0.2      2e-06   27.5   0.2    1.6  1  F-box          F-box domain
    0.00025   19.9   2.3        4.2    5.9   0.0    4.5  5  Nup160         Nucleoporin Nup120/160
     0.0081   15.8   0.1      0.055   13.0   0.1    2.1  1  PQQ_2          PQQ-like domain
  ------ inclusion threshold ------
      0.011   14.3   0.0      0.038   12.5   0.0    1.8  2  Cytochrom_D1   Cytochrome D1 heme domain
      0.022   13.5   0.1       0.51    9.0   0.0    2.7  3  Nucleoporin_N  Nup133 N terminal like
       0.12   11.8   0.0        9.4    5.6   0.0    2.5  2  DUF5046        Domain of unknown function (DUF5046)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         9   1.8e+04       3      11 ..      62      70 ..      61      77 .. 0.67
   2 ?   -3.8   0.1         9   1.8e+04      23      31 ..     157     170 ..     152     170 .. 0.63
   3 !   25.1   0.0   1.2e-08   2.3e-05       7      38 .]     372     402 ..     365     402 .. 0.80
   4 !    6.3   0.0    0.0095        19      10      38 .]     457     484 ..     450     484 .. 0.82
   5 !   18.8   0.1   1.1e-06    0.0022       2      38 .]     490     525 ..     489     525 .. 0.88
   6 !   17.1   0.0   3.8e-06    0.0076       2      38 .]     530     565 ..     529     565 .. 0.87
   7 !   29.6   0.0   4.2e-10   8.4e-07       1      38 []     569     607 ..     569     607 .. 0.92
   8 !   21.3   0.1   1.8e-07   0.00036       1      38 []     611     649 ..     611     649 .. 0.83
   9 ?   -1.3   0.0       2.4   4.7e+03      11      35 ..     665     687 ..     655     689 .. 0.58

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 9
                EEEEEESSS CS
        WD40  3 clrtltGHs 11
                + ++  GH+
  CCE27827.1 62 PKHSMYGHD 70
                668888993 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 9
                 SE.....EEEEETT CS
        WD40  23 aw.....lasGsdD 31 
                 +w     +a+Gs D
  CCE27827.1 157 SWssqpkHATGSHD 170
                 55444547899866 PP

  == domain 3  score: 25.1 bits;  conditional E-value: 1.2e-08
                 EESS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgaw....lasGsdDgtvriWd 38 
                 l GH +s+++l      ++    ++sGs+D+t+riWd
  CCE27827.1 372 LNGHtDSIYCL------QFdefkIISGSRDQTIRIWD 402
                 57**888****......555556679**********9 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0095
                 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtvriWd 38 
                 H  s+ +l  + d   l++Gs D t+ ++d
  CCE27827.1 457 HqASILCL--QYDDEILVTGSSDATCIVYD 484
                 66679999..66777799**99****9998 PP

  == domain 5  score: 18.8 bits;  conditional E-value: 1.1e-06
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++lr l+ H   v +laf  d++ ++++s+D t+ +Wd
  CCE27827.1 490 KPLRRLRHHaAAVLDLAF--DKKHIVTCSKDSTICVWD 525
                 78999**99777****55..888899***********9 PP

  == domain 6  score: 17.1 bits;  conditional E-value: 3.8e-06
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +lr l+GH ++v+++  +  g+ ++s+s D +v++W+
  CCE27827.1 530 ALLRQLRGHaGPVNAV--QMRGNTIVSCSGDLKVKLWN 565
                 57999****999****..667777999988*******8 PP

  == domain 7  score: 29.6 bits;  conditional E-value: 4.2e-10
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+++r+++GH ++  + +fs dg++++s++ D+ +riWd
  CCE27827.1 569 GKNIREFSGHtKGLACSQFSEDGRFVVSAGNDKMIRIWD 607
                 6899******99996666*********9999*******9 PP

  == domain 8  score: 21.3 bits;  conditional E-value: 1.8e-07
                 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 g+clr+ ++H++ v+sl  ++ +  l+sGs+D  +++Wd
  CCE27827.1 611 GECLREMKAHQDlVRSLHIDSVSGRLISGSYDSDIKVWD 649
                 68********7779*9995555555579**********9 PP

  == domain 9  score: -1.3 bits;  conditional E-value: 2.4
                 SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvr 35 
                 s+v s    +d + ++s + D+++ 
  CCE27827.1 665 SWVLSA--KSDYRRIVSTGQDPKIL 687
                 444444..33444466666688876 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   1.3   1.6e-11   3.2e-08       2      48 .]     274     319 ..     273     319 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.6e-11
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlvlr 48 
                 s LP+E+ + I+s+L++  L++ ++V+ +W++ +l+   +Wr+ +lr
  CCE27827.1 274 SLLPTELAINILSHLDAAALANSSCVSQQWYNTTLNS-HIWRESCLR 319
                 67*********************************99.*****9986 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.8   5.5e+03      49      67 ..     385     403 ..     346     408 .. 0.50
   2 ?    5.2   0.0     0.013        26      41      70 ..     459     488 ..     450     510 .. 0.77
   3 ?    0.3   0.0      0.43   8.7e+02      47      81 ..     506     540 ..     495     547 .. 0.79
   4 ?    2.3   0.0      0.11   2.1e+02      47      81 ..     546     580 ..     523     587 .. 0.86
   5 !   16.5   0.0   3.8e-06    0.0076      45      88 ..     586     628 ..     577     632 .. 0.90
   6 ?    3.3   0.0     0.053   1.1e+02      36      82 ..     619     665 ..     617     692 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.8
  ANAPC4_WD40  49 dgklLavaysdgevrllda 67 
                  d+  +  +  d ++r+ d+
   CCE27827.1 385 DEFKIISGSRDQTIRIWDM 403
                  3344555556666666655 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.013
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesg 70 
                   + L+ + d+++L+ + sd ++ ++d++ g
   CCE27827.1 459 ASILCLQYDDEILVTGSSDATCIVYDVKAG 488
                  55688899*******************988 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.43
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                    d k ++   +d+++ + d e+g ++++l+ ++ 
   CCE27827.1 506 AFDKKHIVTCSKDSTICVWDRETGALLRQLRGHAG 540
                  456788899999**************999987765 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.11
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++ g+ ++    d +v+l ++ +gk ++++s +++
   CCE27827.1 546 QMRGNTIVSCSGDLKVKLWNIDTGKNIREFSGHTK 580
                  5678999999999***************9987765 PP

  == domain 5  score: 16.5 bits;  conditional E-value: 3.8e-06
  ANAPC4_WD40  45 aWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  ++++dg++ + a +d  +r+ da++g+++++++++++  v +l+
   CCE27827.1 586 QFSEDGRFVVSAGNDKMIRIWDANTGECLREMKAHQDL-VRSLH 628
                  6899********************************96.88776 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.053
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                  +++  vrsL+       L  +  d+ +++ d+e+g+ +  ++ ++ +
   CCE27827.1 619 AHQDLVRSLHIDSVSGRLISGSYDSDIKVWDMETGRQLLDFPSWHAS 665
                  56778999999999999999****************99999887765 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.2     1e-09     2e-06       3      48 .]     273     318 ..     271     318 .. 0.96

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1e-09
                 HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHHH CS
       F-box   3 lsrLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwcksir 48 
                 +s LP e+  +IL++L+   l + ++VS  w++ + +  +w++s++
  CCE27827.1 273 ISLLPTELAINILSHLDAAALANSSCVSQQWYNTTLNSHIWRESCL 318
                 899****************************************995 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0085        17     234     252 ..     390     408 ..     348     414 .. 0.87
   2 ?    1.2   0.0     0.055   1.1e+02     219     254 ..     503     533 ..     492     537 .. 0.79
   3 !    4.4   0.0     0.006        12     228     255 ..     547     574 ..     539     580 .. 0.84
   4 !    5.9   0.0    0.0021       4.2     226     258 ..     588     619 ..     576     643 .. 0.82
   5 ?   -1.8   0.0      0.45     9e+02     237     253 ..     640     656 ..     635     658 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0085
                 EEEETT-EEEEEETTTTEE CS
      Nup160 234 falsrdgkLrvWnlltgkc 252
                  + srd+++r+W+ +t+ c
  CCE27827.1 390 ISGSRDQTIRIWDMQTLEC 408
                 5669************988 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.055
                 EEEET.....TTTEEEEEETT-EEEEEETTTTEEEE CS
      Nup160 219 ldvavavveigqtylfalsrdgkLrvWnlltgkcla 254
                 ld+a+     +++++++ s d ++ vW+ +tg +l+
  CCE27827.1 503 LDLAF-----DKKHIVTCSKDSTICVWDRETGALLR 533
                 33333.....999******************98876 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.006
                 .TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 228 igqtylfalsrdgkLrvWnlltgkclat 255
                 +  +++++ s d k+++Wn++tgk ++ 
  CCE27827.1 547 MRGNTIVSCSGDLKVKLWNIDTGKNIRE 574
                 4678999****************98875 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0021
                 ...TTTEEEEEETT-EEEEEETTTTEEEEEEE- CS
      Nup160 226 veigqtylfalsrdgkLrvWnlltgkclatidl 258
                 +e +  +++++  d+ +r+W+ +tg cl+ +  
  CCE27827.1 588 SE-DGRFVVSAGNDKMIRIWDANTGECLREMKA 619
                 33.788999999****************98765 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 0.45
                 ETT-EEEEEETTTTEEE CS
      Nup160 237 srdgkLrvWnlltgkcl 253
                 s d  ++vW+ +tg++l
  CCE27827.1 640 SYDSDIKVWDMETGRQL 656
                 568899*******9986 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   2.8e-05     0.055       2     232 ..     518     654 ..     495     680 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
       PQQ_2   2 egvvsaldaatGaelWrvdlarplgggvsravlsggtlfvatgggrlvaldaatGkvlWettl..egpvvgaplvaegrvvvvasdgqlia.ldaedGk 97 
                 ++++ + d++tGa+l +++   ++ g v+   + g+t+++ +g  ++  ++  tGk + e++   +g +++  + ++gr vv a+++ +i+  da++G+
  CCE27827.1 518 DSTICVWDRETGALLRQLR---GHAGPVNAVQMRGNTIVSCSGDLKVKLWNIDTGKNIREFSGhtKGLACSQ-FSEDGRFVVSAGNDKMIRiWDANTGE 612
                 3444445555555555552...34444444444444444445555555555555555544443223333333.44444444444333444413455555 PP

       PQQ_2  98 rlWstqqrseepaelrssaspavagdtvvvgessgklvaldpkdGkvlWerelaaprgtselsrvgdisgrpvvaegtVyassgqgrllaldlatgrrl 196
                  l +++ +                                                                                           
  CCE27827.1 613 CLREMKAH------------------------------------------------------------------------------------------- 620
                 44332222........................................................................................... PP

       PQQ_2 197 wske.issinglpildgdllyvvsagelialdratGa 232
                   ++ + s +  + ++g+l+  + ++ +  +d +tG+
  CCE27827.1 621 --QDlVRSLHI-DSVSGRLISGSYDSDIKVWDMETGR 654
                 ..221222222.4444444443333444444444443 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.46   9.1e+02     291     311 ..     391     414 ..     331     436 .. 0.56
   2 ?   12.5   0.0   1.9e-05     0.038      11     106 ..     555     650 ..     548     667 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.46
                   S...HT-EEEEETTBT-EEE-HHH CS
  Cytochrom_D1 291 d...ndsvaviDkktlekvltlae 311
                       ++ + ++D +tle  l + +
    CCE27827.1 391 SgsrDQTIRIWDMQTLECKLVVGP 414
                   123355666666666665555554 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.9e-05
                   EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSE.EEEEEE-.-TTSEEEEEEEETTEEEEEE CS
  Cytochrom_D1  11 erdagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGln.arsvavS.qddryvivgnYlPgqlvild 105
                    +++ kv+l + d+ +++  + ++    +   f++dgR+v  +g D  + + D  + e ++e+k+  +  rs+ +    +r+ i g+Y   ++++ d
    CCE27827.1 555 CSGDLKVKLWNIDTGKNIREFSGHTKGLACSQFSEDGRFVVSAGNDKMIRIWDANTGECLREMKAHQDlVRSLHIDsVSGRL-ISGSYD-SDIKVWD 649
                   567789999999999*********9999999*********************************999855888885367775.577775.4555555 PP

                   T CS
  Cytochrom_D1 106 a 106
                    
    CCE27827.1 650 M 650
                   5 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.47   9.4e+02     216     232 ..     389     405 ..     377     413 .. 0.82
   2 ?    0.8   0.0     0.078   1.5e+02     190     235 ..     443     490 ..     401     500 .. 0.81
   3 ?    9.0   0.0   0.00026      0.51     197     232 ..     617     652 ..     549     660 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.47
                    EEEEETTSEEEEEEEET CS
  Nucleoporin_N 216 lytlsskgvirvydlsa 232
                    +++ s++ +ir++d+++
     CCE27827.1 389 IISGSRDQTIRIWDMQT 405
                    6778999*******995 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.078
                    -SSS--G....----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCE CS
  Nucleoporin_N 190 ilpgvls....gasereeivqlridssrrilytlsskgvirvydlsasng 235
                      p++++    + + + +i +l  d+  +il+t ss+ +  vyd+ a ++
     CCE27827.1 443 RAPSMPKtvsfSEYHQASILCLQYDD--EILVTGSSDATCIVYDVKAGYK 490
                    45666667778899999*********..6***************995544 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00026
                    ----GG-EEEEEEECCTCEEEEEETTSEEEEEEEET CS
  Nucleoporin_N 197 gasereeivqlridssrrilytlsskgvirvydlsa 232
                     +  ++ + +l ids +++l++ s ++ i+v+d+++
     CCE27827.1 617 MKAHQDLVRSLHIDSVSGRLISGSYDSDIKVWDMET 652
                    556899****************************94 PP

>> DUF5046  Domain of unknown function (DUF5046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0047       9.4      82     117 ..     500     535 ..     477     548 .. 0.85
   2 ?    3.0   0.0     0.029        58      60     116 ..     592     658 ..     544     663 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0047
     DUF5046  82 tpvydvdardktvavyatdgilrvydkttGalltdv 117
                  +v d   ++k +   + d+++ v+d++tGall   
  CCE27827.1 500 AAVLDLAFDKKHIVTCSKDSTICVWDRETGALLRQL 535
                 578899999999********************9865 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.029
     DUF5046  60 vvlwnsgedsryelidletGe....ktpvy......dvdardktvavyatdgilrvydkttGalltd 116
                   +  +g+d+  +++d +tGe    +++ +       +d  ++ +   + d+ ++v+d +tG+ l d
  CCE27827.1 592 RFVVSAGNDKMIRIWDANTGEclreMKAHQdlvrslHIDSVSGRLISGSYDSDIKVWDMETGRQLLD 658
                 3344578888888888888853333566554444555788888888888888888888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4813.44
//
Query:       CCE27828.1  [L=781]
Description: probable beta-1,3 exoglucanase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-95  317.5  20.8    6.8e-86  287.6  13.4    3.9  4  Pectate_lyase_3  Pectate lyase superfamily protein
    2.4e-05   23.9   1.7      0.099   12.4   0.1    2.6  2  End_N_terminal   N terminal extension of bacteriophage endosi


Domain annotation for each model (and alignments):
>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.6  13.4   7.5e-90   6.8e-86       1     215 []      65     289 ..      65     289 .. 0.98
   2 ?   -0.8   0.7      0.13   1.2e+03     103     173 ..     309     379 ..     291     405 .. 0.55
   3 !   43.3   0.7   3.9e-15   3.5e-11       1      61 [.     415     472 ..     415     499 .. 0.92
   4 ?   -1.2   1.2      0.17   1.5e+03     143     170 ..     613     650 ..     567     712 .. 0.41

  Alignments for each domain:
  == domain 1  score: 287.6 bits;  conditional E-value: 7.5e-90
                      SEEGGGGT---EEEEE-HHHHHHHH..............HTSS-EEE-SEEEEESS-EEE-SSEEEEES-TTTEEEEE-TT-SS--SEEES-TT CS
  Pectate_lyase_3   1 frnVkdyGakgDGvtDdtaaiqkais........casatttgavVYfPaGtYlvsspiilksgvqLvGdgngrpvlkaaaafvgaglidgdpyv 86 
                      +rnVkdyGakgDG+tDdt ai++ai+        c+s+t t+a+VYfP+GtY+vs+pii+++++qLvGd+ ++p++kaaa+f g ++id+dpy 
       CCE27828.1  65 YRNVKDYGAKGDGSTDDTVAINNAITdmqrcgkgCDSSTITPAIVYFPPGTYVVSKPIIQYYYTQLVGDAVTVPTIKAAANFIGIAVIDSDPYE 158
                      69***********************99******************************************************************* PP

                      T-..-EEEEEEEEEEEGGGG-SS---SSEEE.ES-EEEEEEEEEEES-SSEEE-SSS..---TT---SS--EEEEES-EEES-SS-SEEES-EE CS
  Pectate_lyase_3  87 sggsealiatnnfyrqirnlkiditavapga.tgihwqtaqatslenvefemseasg..tkhqgifiengsggflndlvfsglgdigiavgnqq 177
                      ++gs++++++nnf+rq+rn+kid t++++++ tgihwq+aqatsl+n++f+m ++    +k+qgif++ngsggf++dl+f+g g ig+ +gnqq
       CCE27828.1 159 NDGSNWYTNQNNFFRQVRNFKIDLTGLPMSTgTGIHWQVAQATSLQNIVFNMIQDRStaNKQQGIFMDNGSGGFMTDLTFNG-GSIGAFLGNQQ 251
                      8899***********************98888********************9999778999********************.*********** PP

                      EEEES-EEE-S--SEEE-TT-EEEEEEEEEESSSEEEE CS
  Pectate_lyase_3 178 ftvrnitfnnattgievlwgwgwtlknvkinncegGid 215
                      ft+rn++fnn++t+i+++w+w wt+++v+i nc++Gi+
       CCE27828.1 252 FTTRNLKFNNCNTAIYMNWNWVWTFHGVSITNCGVGIN 289
                      ************************************96 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.13
                      GGGG-SS.---SSEEEES-EEE.EEEEEE.EES-SSEEE-SSS---TT---SS--EEEEES-EEES-SS-SEEE CS
  Pectate_lyase_3 103 irnlkid.itavapgatgihwq.taqats.lenvefemseasgtkhqgifiengsggflndlvfsglgdigiav 173
                      i+n  +  it ++p+ +g++ +   ++++  +nv + +++++  ++q+i++ n   + ++  + ++ g++g a 
       CCE27828.1 309 ISNTPVGiITTYNPNQAGTNGTlIIDNVDmTKNVPVAVQNGA--NKQTILAGNALVSSWSQGRSYN-GATGKAS 379
                      555555423444666666553335555552333333444333..6666777776666665555555.5666555 PP

  == domain 3  score: 43.3 bits;  conditional E-value: 3.9e-15
                      SEEGGGGT---EEEEE-HHHHHHHH......HTSS-EEE-SEEEEESS-EEE-SSEEEEES CS
  Pectate_lyase_3   1 frnVkdyGakgDGvtDdtaaiqkaiscasatttgavVYfPaGtYlvsspiilksgvqLvGd 61 
                      f++Vk+ GakgDG+tDdta iq++    ++  + ++VYf  G Y+++ +++ +++++ vG+
       CCE27828.1 415 FVSVKSKGAKGDGKTDDTAVIQAIF---DTIGSDQIVYFDHGAYVITDTVKVPKNIKVVGE 472
                      79********************999...99******************************8 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.17
                      ---TT---SS--E....EEEE........S-EEES-SS-S CS
  Pectate_lyase_3 143 tkhqgifiengsg....gfln........dlvfsglgdig 170
                      +++ g++ie+++g    g  +        +  +++  +  
       CCE27828.1 613 YNGRGVLIESTKGvwlwG--TssehnqlyNYQITNAQNVY 650
                      333344444433332221..11111111122333322222 PP

>> End_N_terminal  N terminal extension of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   1.1e-05     0.099       1      20 [.      73      92 ..      73     111 .. 0.85
   2 !   10.2   0.2   5.3e-05      0.47       1      22 [.     423     444 ..     423     460 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.1e-05
                    ---EEEEE-HHHHHHHHHHS CS
  End_N_terminal  1 akGDGvtdDtdalsevlaaa 20
                    akGDG tdDt a+++++++ 
      CCE27828.1 73 AKGDGSTDDTVAINNAITDM 92
                    89**************9874 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 5.3e-05
                     ---EEEEE-HHHHHHHHHHS-T CS
  End_N_terminal   1 akGDGvtdDtdalsevlaaapv 22 
                     akGDG+tdDt+ +++++ +  +
      CCE27828.1 423 AKGDGKTDDTAVIQAIFDTIGS 444
                     89********999988776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5365.16
//
Query:       CCE27829.1  [L=716]
Description: uncharacterized protein CPUR_01303 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.45    9.3  23.7       0.59    8.9  23.7    1.1  1  Mitofilin      Mitochondrial inner membrane protein
       0.58    9.8  46.3        1.2    8.8  46.3    1.4  1  CAF-1_p150     Chromatin assembly factor 1 complex p150 subun
        6.2    5.1   7.5        8.9    4.5   7.5    1.3  1  Menin          Menin


Domain annotation for each model (and alignments):
>> Mitofilin  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  23.7   9.8e-05      0.59      94     217 ..     237     355 ..     200     454 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 9.8e-05
   Mitofilin  94 qssassevaeeeaeatkkaaeakaqqpkseqekekaleevlkealskaekataaakeakdeakkavkeavdklkeasdteeksrekardtaleaaeaaa 192
                  s+ +  ++++++++t + a  k    ++e  k++++ + ++++ +  e+a+++++e+   ak+a ++++++++++ +++e+ ++k +++a ++ +++ 
  CCE27829.1 237 SSQRPNPQPTTPKSPTPRGAWEK---AREETRKKEEERKLKEAEQKRREEAVKRLAEL--RAKEAKERQEREKEKQLKEKEAHDKKLKEQAEQRRKELM 330
                 11222222222222222222222...22222222222222222223333333333222..233344444444444444444444444444444444444 PP

   Mitofilin 193 ekeleklkevielakqseeeaakpl 217
                 ek +++ +e+++++++++e+aa+  
  CCE27829.1 331 EKLRREREEKAKEEEKRKEAAAAAA 355
                 4433333333333333333222222 PP

>> CAF-1_p150  Chromatin assembly factor 1 complex p150 subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  46.3    0.0002       1.2      33     131 ..     254     356 ..     227     366 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0002
  CAF-1_p150  33 rekeekkrlkeekkeekerakeearrkkeee.kekkekerrekkekdekekaeklrlkeekrkekleale...akleekrkkeeekrlkeeekrikaek 127
                 r   ek r   +kkee++++ke +++++ee  k + e   +e ke++e+ek ++l+ ke + k+ +e  e     l ek ++e e + keeekr  a  
  CCE27829.1 254 RGAWEKAREETRKKEEERKLKEAEQKRREEAvKRLAELRAKEAKERQEREKEKQLKEKEAHDKKLKEQAEqrrKELMEKLRREREEKAKEEEKRKEAAA 352
                 334455555556777888888876666666437777888888888888888888888886554433333311044668988999999999999988877 PP

  CAF-1_p150 128 aeit 131
                 a  t
  CCE27829.1 353 AAAT 356
                 7655 PP

>> Menin  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   7.5    0.0015       8.9     439     504 ..     298     363 ..     245     477 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0015
       Menin 439 lkedleaeqa.aaaeaaaaeaaededaaseealeGnrrrgprreskkeeksksseqlPttladltaa 504
                  +++ e e++  ++ea+ ++ +e+ ++ ++e +e   rr+ ++++k+eek k++ ++ +t a  t a
  CCE27829.1 298 ERQEREKEKQlKEKEAHDKKLKEQAEQRRKELMEK-LRREREEKAKEEEKRKEAAAAAATTAPSTPA 363
                 33335555554567777777888888888888887.5555777777777777766665555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3030  (0.169); expected 358.6 (0.02)
Passed bias filter:                      978  (0.0545485); expected 358.6 (0.02)
Passed Vit filter:                       357  (0.0199119); expected 17.9 (0.001)
Passed Fwd filter:                        77  (0.00429472); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.53u 0.38s 00:00:01.91 Elapsed: 00:00:00.51
# Mc/sec: 4227.93
//
Query:       CCE27830.1  [L=376]
Description: related to syntaxin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-15   54.5   0.0    1.7e-14   53.7   0.0    1.4  1  PX        PX domain
  ------ inclusion threshold ------
      0.019   14.7   1.4      0.019   14.7   1.4    2.5  2  DUF745    Protein of unknown function (DUF745)
       0.46   10.5   4.9       0.86    9.6   3.1    2.1  2  DUF1664   Protein of unknown function (DUF1664)
       0.63   10.6   4.9        1.6    9.3   4.9    1.6  1  DUF16     Protein of unknown function DUF16
        1.8    8.9  13.7        0.6   10.5   2.7    2.4  2  HrpB7     Bacterial type III secretion protein (HrpB7)


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   4.8e-18   1.7e-14      15     111 ..      17     114 ..       7     116 .. 0.90

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 4.8e-18
                 TTSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHH..SHHHHHHHH CS
          PX  15 gskkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrn..sevlteFLe 111
                  ++++ y+ly+++l+   +++ v++rYs+F  Lhs L ++  +    plP+k++++s +  + + + +r+ gLe+yL+ +++ p  r   +++ ++FL+
  CCE27830.1  17 EGSSKPYTLYNITLRLPLRSFVVQKRYSEFATLHSTLVEQVGSPPPEPLPGKHWLKS-TVRSADLTHERQIGLERYLRTIAETPDRRWrdTSAWRTFLN 114
                 6899**************************************99999*********8.899*********************99877666888888886 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.4   5.4e-06     0.019      66     153 ..     151     236 ..     143     254 .. 0.82
   2 ?    3.0   2.5      0.02        73     113     160 ..     324     371 ..     313     376 .] 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.4e-06
      DUF745  66 qleqelreaeavvqeekkslqsseanakaaakaakqaqqqlealkallkaakenlenaeqvaagaqqelaektqlleaAkkRveeLkk 153
                 + +++++ea + + +  ++  s + n +aaa+aa+ a++ l    +l+ a ++ l+++++++   + el+ +++l+ +A+   e L k
  CCE27830.1 151 EFKHSVNEARQHLARRDAA--SDSGNNTAAAEAASAARKVLLKAGTLVSALSDGLRKMQDANRLGEGELRRRRDLVSTARMEREALDK 236
                 5667788888888655443..344566788899999999999999***********************************98888765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.02
      DUF745 113 lkaakenlenaeqvaagaqqelaektqlleaAkkRveeLkkqlkeark 160
                 l++ ++ +++ +++  + ++e++++t++l++  + v++++++l+ a +
  CCE27830.1 324 LDQLTAIIRRQKEMGLQIKSEVDAQTEMLAQLDEDVDRVHRKLDVANN 371
                 666777788888999999*************************99976 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.25     9e+02      53      89 ..     152     188 ..     147     218 .. 0.64
   2 ?    9.6   3.1   0.00024      0.86      60     119 ..     313     375 ..     303     376 .] 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.25
     DUF1664  53 vseslaatkrhLssridrvdkkldeqkeiskeikeev 89 
                 +++s++++++hL++r +  d+  +  ++ +++ +++v
  CCE27830.1 152 FKHSVNEARQHLARRDAASDSGNNTAAAEAASAARKV 188
                 6788999999999997777765555444444443333 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00024
     DUF1664  60 tkrhLss...ridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskler 119
                 +k++L++   ++d++ + +  qke+  +ik+ev++  e l++++edv+ v++     ++++++
  CCE27830.1 313 QKKELADqdmNLDQLTAIIRRQKEMGLQIKSEVDAQTEMLAQLDEDVDRVHRKLDVANNRIKK 375
                 56677652225888899999*******************************999988888876 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.9   0.00043       1.6      40     101 ..     314     375 ..     303     376 .] 0.90

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00043
                 HHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHH CS
       DUF16  40 eakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRlDs 101
                 +++++ ++ ++++l+ ++++q e   ++k e++aq e l ++de ++ + + L+  n+R+ +
  CCE27830.1 314 KKELADQDMNLDQLTAIIRRQKEMGLQIKSEVDAQTEMLAQLDEDVDRVHRKLDVANNRIKK 375
                 5678889999*************999*******************************99865 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   3.4     0.022        80      38     113 ..     152     228 ..     143     240 .. 0.72
   2 ?   10.5   2.7   0.00017       0.6      73     133 ..     316     376 .]     311     376 .] 0.91

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.022
       HrpB7  38 laaaqaqveaardavraheerlddlttgsspfsiad.ylacrayrdvlegrvraaeaelaaarqaldaaedavaata 113
                  +   +++++  ++ +a  ++ ++++++ ++  + + +l    ++++l++ +r+++ + +  +++l++++d v++ +
  CCE27830.1 152 FKHSVNEARQHLARRDAASDSGNNTAAAEAASAARKvLLKAGTLVSALSDGLRKMQDANRLGEGELRRRRDLVSTAR 228
                 45555666666666666666666666666544444425677889999999999999999999999999999988765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00017
       HrpB7  73 dylacrayrdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerierl 133
                 +++  ++ +d+l++ +r  ++   + + ++da+++ +a+ ++ + R  +++d+ ++ri++l
  CCE27830.1 316 ELADQDMNLDQLTAIIRRQKEMGLQIKSEVDAQTEMLAQLDEDVDRVHRKLDVANNRIKKL 376
                 566678889999999999999999**********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2974.57
//
Query:       CCE27831.1  [L=244]
Description: probable EB1-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-16   59.2   2.5    7.1e-16   58.2   2.5    1.6  1  EB1             EB1-like C-terminal motif
    1.4e-06   28.5   0.9    2.7e-06   27.5   0.9    1.5  1  CH              Calponin homology (CH) domain
     0.0068   15.9   1.3      0.021   14.3   1.3    1.9  1  LMSTEN          LMSTEN motif
  ------ inclusion threshold ------
      0.021   14.9   0.2      0.043   13.9   0.2    1.6  1  CH_2            CH-like domain in sperm protein
       0.11   12.6   0.5       0.28   11.3   0.5    1.7  1  Suppressor_APC  Adenomatous polyposis coli tumour suppressor 
       0.16   12.6   0.6       0.63   10.6   0.2    2.1  2  PepSY_like      Putative beta-lactamase-inhibitor-like, PepSY


Domain annotation for each model (and alignments):
>> EB1  EB1-like C-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   2.5   2.4e-19   7.1e-16       1      41 []     179     224 ..     179     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 2.4e-19
                 HHHHHHHHHHHHHHHHHHHHH....TT----.HHHHHHHHHHHHS- CS
         EB1   1 LekERdFYFsKLRdIEilcqt....epelee.dlpivkkikkILYa 41 
                 Le+ERdFYFsKLRdIE+l+q+    +pele+ ++ +vk+i+ ILY+
  CCE27831.1 179 LERERDFYFSKLRDIELLIQQavdeDPELEKqEDGLVKQIQLILYS 224
                 8********************9999555553055599********7 PP

>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.9   9.2e-10   2.7e-06       2     100 ..       3      98 ..       2     105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 9.2e-10
                 HHHHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT...HHHHHHHHHHHHHHHHHHTTCHTTSS-HHHHHT...TSHH CS
          CH   2 eqkkellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnks...efkkleNinlaldvaekklgvpkvlieaedlve...gknk 94 
                 e+++el++W+ns l+ +  kv      e++ +G +Lc+++++++ +l ++++++++   e+ +++N++ +l+ a  k  ++k    +e l++    +n 
  CCE27831.1   3 ESRQELIQWLNSLLQLNMTKV------EQCGTGAALCQVFDSIYMDL-PMSRVKFNangEWAYVQNFK-VLQNAFTKHQIDKPI-PVEALIKckmQDNL 92 
                 6799***********998887......8***************9998.9999988899**********.8888999******99.*******6655555 PP

                 HHHHHH CS
          CH  95 svltll 100
                 ++l++ 
  CCE27831.1  93 EFLQWT 98 
                 666665 PP

>> LMSTEN  LMSTEN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.3   6.9e-06     0.021      13      41 ..     196     227 ..     189     231 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.9e-06
      LMSTEN  13 fiQrpfvddDPdKEkr....iKElELLLMSaEn 41 
                 +iQ+  vd+DP+ Ek+    +K + L+L S+E+
  CCE27831.1 196 LIQQA-VDEDPELEKQedglVKQIQLILYSTEE 227
                 58877.5********88888************7 PP

>> CH_2  CH-like domain in sperm protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   1.4e-05     0.043       1      83 [.       8      87 ..       8     122 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
        CH_2  1 llkWlqs.ldlsrsvknlkrdfsdGvlvAeilkkyypklvdlhnysngsslaaklnNWetLekvlkklgiklskelieevasek 83
                l++Wl+s l+l+ ++    +++  G ++ +++  +y  l       n++   a ++N+++L+  ++k++i+ +   +e+++++k
  CCE27831.1  8 LIQWLNSlLQLNMTKV---EQCGTGAALCQVFDSIYMDLPMSRVKFNANGEWAYVQNFKVLQNAFTKHQIDKP-IPVEALIKCK 87
                689****99**99888...99****************95544444578888899*************999743.3345556665 PP

>> Suppressor_APC  Adenomatous polyposis coli tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   9.5e-05      0.28      10      46 ..     164     200 ..     163     225 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.5e-05
  Suppressor_APC  10 eLeqekdlLlqgLeaveraRdWylqqlrevqerqksl 46 
                     +L+qe + L +    +er+Rd y ++lr+++  +++ 
      CCE27831.1 164 ALQQENNTLKETVVGLERERDFYFSKLRDIELLIQQA 200
                     699*************************976555544 PP

>> PepSY_like  Putative beta-lactamase-inhibitor-like, PepSY-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00021      0.63      11      34 ..      46      67 ..      37     113 .. 0.72
   2 ?   -0.9   0.0      0.83   2.5e+03      50      68 ..     173     191 ..     163     201 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
                EEEEE-TTS-EEEEE-TTSEESGG CS
  PepSY_like 11 teveFdkkGeWkeiegkkteipls 34
                + v+F+++GeW  ++  + ++  +
  CCE27831.1 46 SRVKFNANGEWAYVQ--NFKVLQN 67
                789***********9..3333222 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.83
                 TEEEEEEEECSSEEEEEET CS
  PepSY_like  50 dekvtkierkkkeyeiele 68 
                 +e v+ +er++ +y  +l 
  CCE27831.1 173 KETVVGLERERDFYFSKLR 191
                 3666677777766665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1765.43
//
Query:       CCE27832.1  [L=797]
Description: probable ATP-dependent RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-44  151.0   0.4    4.1e-44  150.4   0.0    1.5  2  DEAD        DEAD/DEAH box helicase
    1.1e-28   99.8   0.1    5.8e-28   97.4   0.1    2.2  2  Helicase_C  Helicase conserved C-terminal domain
     0.0068   15.2   1.8      0.011   14.5   0.1    2.2  3  UTP25       Utp25, U3 small nucleolar RNA-associated SSU proc


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4   0.0   6.8e-48   4.1e-44       1     176 []     291     461 ..     291     461 .. 0.96
   2 ?   -4.2   0.1         2   1.2e+04     138     159 ..     651     672 ..     647     677 .. 0.60

  Alignments for each domain:
  == domain 1  score: 150.4 bits;  conditional E-value: 6.8e-48
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngv 98 
                 t+iQ ++ip++l g+d+++ a TGsGKT+afl+p+l++++ + ++ +++++++++PtreLa q++    k+  ++d++  l +gg + + q ++l+ ++
  CCE27832.1 291 TPIQNKTIPIALMGKDLVGGAVTGSGKTGAFLVPILERLLFRpNKIPTTRVVVLTPTRELAMQCHAVGVKLARFTDIKFTLAVGGLSLKAQENELRLRP 389
                 89************************************98878889999**********************************************99** PP

                 SEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  99 divvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 d++++tpgr++d++ ++ ++n++ v++lVlDEadr+l++gf d++n+il++l       +++rq++++SAT++++v++l
  CCE27832.1 390 DVIIATPGRFIDHMrNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTL-------PKSRQTMLFSATMTSTVDRL 461
                 ************9977888*********************************.......68899*********999875 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 2
                 THHHHHHHHHHSHHHCTTSTTT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 138 fsdfinrilnqlpqitcdgklq 159
                 ++d+i+++ n ++ i +++k++
  CCE27832.1 651 MQDEIDAMENDIDVIMQEEKEE 672
                 5666777777776666665544 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.76   4.6e+03      13      57 ..     335     383 ..     324     395 .. 0.67
   2 !   97.4   0.1   9.8e-32   5.8e-28       5     111 .]     505     607 ..     499     607 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.76
                 TTTTSEEEEEESSHH...HHHH..HHHHHHHT.TSTEEEESTTSTHHHHHH CS
  Helicase_C  13 eeeggkilifvntid...rlek..vklllekk.gikvavlhgelpqneree 57 
                 +  + ++++ ++t++   +++   vkl   ++ +ik++   g l+ + +e 
  CCE27832.1 335 KIPTTRVVVLTPTRElamQCHAvgVKLA--RFtDIKFTLAVGGLSLKAQEN 383
                 5567788999999996554443554555..666788888888777777665 PP

  == domain 2  score: 97.4 bits;  conditional E-value: 9.8e-32
                 HHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHH CS
  Helicase_C   5 allellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqr 103
                 ++++ +     +++++if ++++++++++++    g+++a lhg+++q +r+ ++e+f++g++ +L+atd a+rG+di++v++Vin+++p++++ y++r
  CCE27832.1 505 HICKTF----YHERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQTQRINSVESFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHR 599
                 444444....789**********998888886667**************************************************************** PP

                 HTTSSSTT CS
  Helicase_C 104 iGRtgRag 111
                 +GRt+Rag
  CCE27832.1 600 VGRTARAG 607
                 ******97 PP

>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       0.4   2.4e+03      76      91 ..     339     354 ..     332     362 .. 0.86
   2 ?   -0.7   0.0      0.08   4.8e+02     186     218 ..     407     441 ..     386     447 .. 0.62
   3 !   14.5   0.1   1.9e-06     0.011     244     420 ..     443     600 ..     435     626 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.4
       UTP25  76 pkvLillptreaalev 91 
                 ++v++l ptre a+++
  CCE27832.1 339 TRVVVLTPTRELAMQC 354
                 68**********9975 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.08
       UTP25 186 tdf.LsSiEvlivdqadvlemQnw.ehvetvlkhl 218
                  +f +  +E+l++d+ad +    + ++++++l +l
  CCE27832.1 407 ASFnVDTVEILVLDEADRMLEDGFaDELNEILTTL 441
                 33336789*********987655425677777666 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 1.9e-06
       UTP25 244 llRQtlvfssyetpeinslfnskleNlaGkvkvkkvvkggslekvglkvrqvFqrfdaesivdepdarfkfftekilpqlkkssskssgiliyipsyfd 342
                 + RQt++fs+ +t ++  l+ +   N   ++ v +++k+      ++ + q F r+        +d+r+ ++      ++ k + ++++++i++ +  +
  CCE27832.1 443 KSRQTMLFSATMTSTVDRLI-RVGLNKPARLMVDSQKKT------VTTLVQEFVRLRPGR----EDKRMGYLA-----HICK-TFYHERVIIFFRQKKE 524
                 57999999999999999999.777788888888777776......566778899998654....689999854.....4555.56679*********** PP

       UTP25 343 fvrvrnylkeekvsfaaiseysskkevsraRelFfkgkkkvlLyteRlhffrRykikgvkkvilYklPenpefyselv 420
                   r r  +    +s a+++ + ++++  +  e+F +gk + lL t+ +   r  +ikgv +vi Y++P+  e y   v
  CCE27832.1 525 AHRARIIFGLLGLSCAELHGSMNQTQRINSVESFRDGKVSYLLATDLAS--RGLDIKGVDTVINYEAPQSLEIYVHRV 600
                 **********************************************875..99*****************99997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1439  (0.080261); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.13u 0.34s 00:00:01.47 Elapsed: 00:00:00.50
# Mc/sec: 4791.12
//
Query:       CCE27833.1  [L=817]
Description: probable actin cytoskeleton organization and biogenesis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-31  106.3   0.0      2e-30  105.0   0.0    1.7  1  DUF2183          Uncharacterized conserved protein (DUF2183)
     0.0059   16.1   0.0     0.0099   15.4   0.0    1.2  1  LNS2             LNS2 (Lipin/Ned1/Smp2)
  ------ inclusion threshold ------
      0.014   15.7   0.0       0.08   13.2   0.0    2.2  2  CarboxypepD_reg  Carboxypeptidase regulatory-like domain


Domain annotation for each model (and alignments):
>> DUF2183  Uncharacterized conserved protein (DUF2183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.0   3.3e-34     2e-30       1      99 []     421     517 ..     421     517 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 3.3e-34
     DUF2183   1 ffYvSaspwnlyplleeFleenglPkgslllrdlsltlksllkekstaehKraeiekiletfperkfiliGDsgqkdpeiYaeiakefpeqikaiyIRd 99 
                 ++Y S+spw+lyp+l++F++ +glP+gsl+l+++s  l+++++    ae+K++++++++++fp+rkf+l+GDsg++d+e+Y+e+a ++p++++ i+IRd
  CCE27833.1 421 LHYCSNSPWQLYPVLATFFKIAGLPPGSLHLKQYSGMLQGIFE--PVAERKKSTLNRLIKDFPRRKFLLVGDSGEADLEVYTELALANPGHVLGIFIRD 517
                 69*********************************99999997..58***************************************************7 PP

>> LNS2  LNS2 (Lipin/Ned1/Smp2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.7e-06    0.0099      50     101 ..     370     428 ..     365     441 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-06
        LNS2  50 visdidgtitksdvlGhilpllgk.......dwthkgvaklyskikengYkilylsara 101
                 +isdid ti +s++ G   +++ +       d   +gv++ y+++++ g  + y+s+ +
  CCE27833.1 370 LISDIDDTIKRSNISGGAREIFRNtfvrdlgDLRIDGVTEWYTDLHNMGVSLHYCSNSP 428
                 69**************98888766666777788899*******************9865 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.3e-05      0.08      18      70 ..     311     363 ..     308     371 .. 0.88
   2 ?   -1.6   0.0      0.56   3.3e+03      40      53 ..     439     452 ..     438     473 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
  CarboxypepD_reg  18 tVtvtnadtgtvastttdadGafrlrglpp.gtysvtvsapGyatatreevtlt 70 
                      tV ++n+ +++++++ td+ G+f++r+  p  + +v+v a+   +at+ +v++t
       CCE27833.1 311 TVFFYNDTESKSKTVLTDDAGHFNVRAALPfVPTRVRVLANEKLSATQ-DVEIT 363
                      688888888999**************88888****************8.68877 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.56
  CarboxypepD_reg  40 frlrglppgtysvt 53 
                      f+++glppg+  ++
       CCE27833.1 439 FKIAGLPPGSLHLK 452
                      99*******98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (817 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 5652.61
//
Query:       CCE27834.1  [L=77]
Description: uncharacterized protein CPUR_01308 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 616.09
//
Query:       CCE27835.1  [L=249]
Description: uncharacterized protein CPUR_01309 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-16   58.5   0.0    1.1e-15   57.8   0.0    1.3  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0     6e-20   1.1e-15      64     179 ..       4      90 ..       1     106 [. 0.92

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 6e-20
                 CHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......T CS
       RVT_1  64 kkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvt 162
                 + ++a+ ++k+Dlk++F+ +++++  + ++afk +                         +g+ye+ ++p+G+ ++P++f+ +mn+++++l        
  CCE27835.1   4 HLQGARFFTKIDLKSGFNLIRMAKGHEWKKAFKWK-------------------------YGLYEYLVMPFGLMNAPATFQALMNHIFHDLLD----AG 73 
                 67899******************************.........................9*******************************9....59 PP

                 EEECTTEEEEEESSHHH CS
       RVT_1 163 llrYaDDililskskee 179
                 +l+Y+DDili++ + e+
  CCE27835.1  74 VLVYIDDILIYAATTEA 90 
                 ************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1960.06
//
Query:       CCE27836.1  [L=115]
Description: uncharacterized protein CPUR_01310 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 863.07
//
Query:       CCE27837.1  [L=220]
Description: uncharacterized protein CPUR_01311 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1623.95
//
Query:       CCE27838.1  [L=511]
Description: related to ACB 4-hydroxyacetophenone monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-14   53.0   0.0    5.9e-14   51.4   0.0    1.8  1  FMO-like       Flavin-binding monooxygenase-like
    3.4e-14   52.8   0.0    9.2e-12   44.8   0.0    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.1e-12   47.8   0.1    3.8e-11   42.8   0.2    2.5  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    3.1e-10   39.7   0.0    7.4e-08   31.9   0.0    3.0  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
      1e-06   28.8   2.0    4.2e-06   26.9   0.1    2.3  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    9.1e-05   22.2   0.1    0.00038   20.1   0.0    2.1  3  DAO            FAD dependent oxidoreductase
    0.00025   20.4   0.5      0.014   14.7   0.1    2.2  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
     0.0022   18.5   3.5        0.2   12.2   0.1    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0036   17.3   1.8      0.088   12.8   0.1    2.8  3  NAD_binding_9  FAD-NAD(P)-binding
     0.0041   17.2   0.0        1.8    8.7   0.0    2.4  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
     0.0047   16.8   0.3     0.0087   16.0   0.3    1.4  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
     0.0069   15.8   0.1        1.9    7.8   0.0    2.2  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
  ------ inclusion threshold ------
       0.19   10.7   0.6       0.34    9.9   0.6    1.4  1  FAD_binding_2  FAD binding domain
       0.95    8.1   3.9       0.36    9.5   0.3    1.9  2  HI0933_like    HI0933-like protein
        2.8    8.6   4.2        7.4    7.2   0.3    2.3  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0     5e-17   5.9e-14       3     358 ..      45     381 ..      43     404 .. 0.70

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 5e-17
    FMO-like   3 kvaviGaGvsGlasikccleegleptcfer..sddiGGlwrfkenveeGrasiyksvvsnsskemscfsdfplpedypnflhnsklleylklfakefdl 99 
                 ++a+iGaG++G++s   c+  g++ + f+    +++GG+w    +v++  a    s++         ++     + ypn   ++++++ +kl  k+++l
  CCE27838.1  45 RIAIIGAGITGVTSAAHCVGHGFDVVIFDSgtKEQLGGIWS---KVNDTSALQIHSIM--------FHPSVSWSNGYPN---RQQIVQQVKLLWKRYHL 129
                 89**************************9632589*****6...56676666666665........4566677789998...68999***********9 PP

    FMO-like 100 lkyiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdi 198
                  +  +f+ +v +        + G+w +   ++g+     f+ ++   G   +p++p  ++pG+e+fkG+++hs +    +  k+k + +iG G s+ + 
  CCE27838.1 130 QRKTRFNFKVNKT----YQDEQGRWIINDPSNGR-----FEGLIAAVGTCGEPKMP--TLPGMEQFKGEIYHSSQLTG-KNAKDKSIAIIGGGASAVE- 215
                 9999999877543....34589***999888887.....45555555666689999..59**************9875.5569********9999987. PP

    FMO-like 199 avelsrtae..qvllstrsGswvlsrvsdsGypwdmllvtrfksllknilptalsnwlvekklnkrfnhenyglkpkkral.akepvlndelparilaG 294
                 a e + +a+  ++ + +rs  w++        p ++++ t ++   +    +++++++ e  l k f  +   + p+++ l +  p++n ++  ++  G
  CCE27838.1 216 ALEFAAAADagKISILSRSDKWII--------PRNIIVDTLLAL--NIFGQETILSFIPEFLLRKLFYRDLEDIAPTDKGLfTDTPMVNSDIMHKLRNG 304
                 566666555115555555555555........666666654432..22223456666666666667777777777777654156789999999999999 PP

    FMO-like 295 avk.vkssvkeltetsaifed........g.tveedi..dvvifatGytf.afpfleeslvkveknkvslykkvfpa 358
                 + + +++++++lt + ++ +         g  +ee i  d++++atG+   +  fl +   +        y + fp+
  CCE27838.1 305 KAQwIRGDIEKLTSNGVLVNRrekgvpkgGpGHEEVIqaDILVMATGFMRpSLSFLPDDCFQEPYGPPNWYLQTFPP 381
                 87548999999999998886411111111112344334478888888753267777777666666666666666666 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   7.7e-15   9.2e-12       2     176 ..      45     236 ..      44     250 .. 0.72
   2 !    6.1   0.0    0.0047       5.7      71     116 ..     317     360 ..     262     379 .. 0.69

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 7.7e-15
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...............HHHHCHHHHCCCCHC....CTCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxx....xxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias...............evvkklnqgielllg....eevvkidp 80 
                  ++++iG+G+ G++ a +   +g++v+++ + gt    g + sk+   +a + + +                +    + q+++ll +    + ++++ +
   CCE27838.1  45 RIAIIGAGITGVTSAAHCVGHGFDVVIF-DSGTKEQLGGIWSKVNDTSALQIHSIMfhpsvswsngypnrqQ----IVQQVKLLWKryhlQRKTRFNF 137
                  79**************************.6666777777777777766666665556888888999975441....4444554444222222233322 PP

                  SC.EEEEETEEEC........TCEEEEEESEEEE---..EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-. CS
                  xx.xxxxxxxxxx........xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Pyr_redox_2  81 gk.kkvklekkke........gdeekiaydklvlAtG..ssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgk. 166
                  +  k++      +        +d  +  ++ l+ A G  ++p+ +++pG+++   k+ ++++s +   ++ ++k+i+++GgG+ +vE   ++a + + 
   CCE27838.1 138 KVnKTY------QdeqgrwiiNDPSNGRFEGLIAAVGtcGEPKMPTLPGMEQF--KG-EIYHSSQLTGKNAKDKSIAIIGGGASAVEALEFAAAADAg 226
                  221233......1344456887777889*********644**********444..44.6799999999999999*************98887777432 PP

                  EEEEEESSSS CS
                  xxxxxxxxxx RF
  Pyr_redox_2 167 evtlveardr 176
                  ++ ++ + d+
   CCE27838.1 227 KISILSRSDK 236
                  5777777665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0047
                  HCCTCEEEEESCEEEEETEEEC......TCEEEEEESEEEE---E.EE-BCTC CS
                  xxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxx.xxxxxxx RF
  Pyr_redox_2  71 lgeevvkidpgkkkvklekkke......gdeekiaydklvlAtGs.sprdlgi 116
                  +  ++v + + +        k+      g+ee i++d lv+AtG+ +p +  +
   CCE27838.1 317 TS-NGVLVNRRE--------KGvpkggpGHEEVIQADILVMATGFmRPSLSFL 360
                  33.333332222........22555566999*************746555455 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.2   3.2e-14   3.8e-11       2     199 ..      48     237 ..      47     245 .. 0.83
   2 ?    1.8   0.0     0.097   1.2e+02     120     135 ..     338     353 ..     292     369 .. 0.77

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 3.2e-14
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkgnignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelp.. 97 
                  IiGaG  G+++a ++  +g+ d++i + g+  +    + k + + s       l+i+    i+    p++s ++ +++r++++++++ + k+++l+  
   CCE27838.1  48 IIGAGITGVTSAAHCVGHGF-DVVIFDSGTKEQLGGIWSKVNDT-S------ALQIHS---IM--FHPSVSWSNGYPNRQQIVQQVKLLWKRYHLQrk 132
                  9*******************.8*******999999999887665.2......355554...44..34678899**********************722 PP

  Pyr_redox_3  98 iklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeek.lvkhyskvk.efhkyagqkvvViGgknSavDaAlelvrk.gaeVtv 192
                   + + +V++  ++++g  +  + ++ + + +i A G  + P+++  pG e+ + + y+  +   ++ +++ +++iGg+ Sav+a    +++   ++++
   CCE27838.1 133 TRFNFKVNKTYQDEQGRWIINDPSNGRFEGLIAAVGTCGEPKMPTLPGMEQfKGEIYHSSQlTGKNAKDKSIAIIGGGASAVEALEFAAAAdAGKISI 230
                  566889********************************************876666666665677899***************753333332446777 PP

  Pyr_redox_3 193 vtrgsei 199
                  + r++++
   CCE27838.1 231 LSRSDKW 237
                  7776665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.097
  Pyr_redox_3 120 ketyeAkkviiAtGef 135
                  +e+++A+ +++AtG++
   CCE27838.1 338 EEVIQADILVMATGFM 353
                  4566667777777764 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.2   2.4e+02     186     209 ..      38      61 ..      29      71 .. 0.76
   2 !   31.9   0.0   6.2e-11   7.4e-08     103     227 ..     123     236 ..      98     263 .. 0.79
   3 ?    3.0   0.0     0.037        44     324     341 ..     336     353 ..     314     354 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.2
  K_oxygenase 186 eellakkriaVvGsGqSaaeifed 209
                  +++l++ ria++G+G ++   + +
   CCE27838.1  38 DAELSRPRIAIIGAGITGVTSAAH 61 
                  5578899********887655555 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 6.2e-11
  K_oxygenase 103 rWvasqleeqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsG 200
                   W   +l+ + rf+ +v++  +de+    ++ ++   ++    ++e     +g+ +epk+P++    + k +++Hss+++ ++   ++ k+ia++G+G
   CCE27838.1 123 LWKRYHLQRKTRFNFKVNKTYQDEQG---RWIIND-PSN---GRFEGLIAAVGTCGEPKMPTLPGMEQFKGEIYHSSQLTGKN---AKDKSIAIIGGG 210
                  588999**99*********9988875...455653.344...5566666689999******9855555568*******99887...899********* PP

  K_oxygenase 201 qSaaeifedllrrqkkvelklvtrsea 227
                   Sa e +e +++   + ++++++rs++
   CCE27838.1 211 ASAVEALEFAAAAD-AGKISILSRSDK 236
                  *****988776654.478999988875 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.037
  K_oxygenase 324 geeetlevdavvlATGYr 341
                  g+ee++++d++v+ATG+ 
   CCE27838.1 336 GHEEVIQADILVMATGFM 353
                  78999***********96 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   3.6e-09   4.2e-06       1      66 [.      48     118 ..      48     120 .. 0.72
   2 ?    1.2   0.3      0.38   4.5e+02       1      25 [.     206     231 ..     206     236 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.6e-09
                    EE--SHHHHHHHHHHHCCTEEEEEE-SS..SSSSGGG-EECETT......CEECTS---EEETTHHHHCHHHHC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekr..drlGGraasyevpg......vrvdygahifhgsgyypnvrrllr 66 
                    I+GaG++G + A+++  +gfdv++++++  ++lGG ++ +++        + +   +++ +g   ypn +++++
     CCE27838.1  48 IIGAGITGVTSAAHCVGHGFDVVIFDSGtkEQLGGIWSKVNDTSalqihsIMFHPSVSWSNG---YPNRQQIVQ 118
                    9**************************83356***999998854444422333333444333...677666665 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.38
                    EE--SHHHHHHHHHHHCCTE.EEEEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagf.dvlll 25 
                    I+G+G+s+  a  ++a a++ ++ +l
     CCE27838.1 206 IIGGGASAVEALEFAAAADAgKISIL 231
                    9******9988888777655455555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.2e-07   0.00038       2      29 ..      46      75 ..      45     163 .. 0.86
   2 ?   -2.4   0.2       2.2   2.7e+03       2      10 ..     204     212 ..     203     235 .. 0.73
   3 ?   -1.6   0.0       1.3   1.5e+03     155     334 ..     300     352 ..     271     370 .. 0.46

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.2e-07
                EEEECTSHHHHHHHHHHHHTT..EEEEESS CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekg 29
                ++iiG+Gi+G++ A +   +g  V+++++g
  CCE27838.1 46 IAIIGAGITGVTSAAHCVGHGfdVVIFDSG 75
                9***************************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.2
                 EEEECTSHH CS
         DAO   2 vviiGGGii 10 
                 ++iiGGG  
  CCE27838.1 204 IAIIGGGAS 212
                 89*****86 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.3
                 HHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTE CS
         DAO 155 aaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsdllgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgv 253
                 +++++ ++ ++g  +++l                                                                                 
  CCE27838.1 300 KLRNGKAQWIRG-DIEKL--------------------------------------------------------------------------------- 316
                 333333333333.33333................................................................................. PP

                 EEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGGCGEEEEEEEEEEE..TTSSEEEEEEE....TEEEEEEEEEC CS
         DAO 254 yvtprkdgrvlvGgtadeesgdddpevdeedidellealrklfPqlgdvlrkwaGlrpl..pdglpligetp....gvkglylatGh 334
                                                                    +  G++ +    g p  g+++    + + l++atG+
  CCE27838.1 317 ---------------------------------------------------TSNGVLVNrrEKGVPKGGPGHeeviQADILVMATGF 352
                 ...................................................223333311112222222222222233333444443 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.2e-05     0.014      28      61 ..      43      76 ..      38     101 .. 0.88
   2 ?    3.8   0.1     0.026        31      21      52 ..     192     225 ..     181     235 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.2e-05
                 --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C 28 pakvlviGgGvaGlqAiatakglgakVtvlDvrp 61
                 + ++ +iG+G+ G+ ++a ++g g +V+++D  +
   CCE27838.1 43 RPRIAIIGAGITGVTSAAHCVGHGFDVVIFDSGT 76
                 56899**************************865 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.026
                  CEETC..B---EEEEESTSHHHHHHHHHHHHTT- CS
  AlaDh_PNT_C  21 Ggvpg..vepakvlviGgGvaGlqAiatakglga 52 
                  ++++g  ++   + +iGgG   ++A++ a++ +a
   CCE27838.1 192 SQLTGknAKDKSIAIIGGGASAVEALEFAAAADA 225
                  4444432467789*************99987665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.7      0.01        12       1      29 [.      45      73 ..      45      78 .. 0.88
   2 !   12.2   0.1   0.00017       0.2       1      34 [.     203     237 ..     203     245 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.01
                EEEEECSSHHHHHHHHHHHHTTSEEEEEE CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvve 29
                +++++G+G +g+  A+    +g +V +++
  CCE27838.1 45 RIAIIGAGITGVTSAAHCVGHGFDVVIFD 73
                79**************9999999998876 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00017
                 EEEEECSSHHHHHHHHHHHHTT.SEEEEEESSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelg.kkVtvversdkl 34 
                 +++++GgG +++E+ +++a+    k++++ rsdk 
  CCE27838.1 203 SIAIIGGGASAVEALEFAAAADaGKISILSRSDKW 237
                 689************99988652699***999985 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   7.4e-05     0.088       1      48 [.      47      90 ..      47     104 .. 0.85
   2 ?    2.6   0.1       0.1   1.2e+02       1      19 [.     205     223 ..     205     235 .. 0.80
   3 ?   -1.3   0.0       1.6   1.9e+03     141     154 ..     338     351 ..     301     352 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.4e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtdqse 48
                   ai+GaG++G++ +++ + +      +++ +fd  ++   g++w++ +++
     CCE27838.1 47 AIIGAGITGVTSAAHCVGH-----GFDVVIFDSgTKEQLGGIWSKVNDT 90
                   8***************999.....6********8666669***998654 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.1
  NAD_binding_9   1 aivGaGprGlavlerLlar 19 
                    ai+G+G++++ +le  +a 
     CCE27838.1 205 AIIGGGASAVEALEFAAAA 223
                    8*********999876665 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.6
  NAD_binding_9 141 gaslaadaVvLAlG 154
                    ++ ++ad +v+A+G
     CCE27838.1 338 EEVIQADILVMATG 351
                    46789********9 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0015       1.8       9      42 ..      40      72 ..      35      99 .. 0.80
   2 ?    5.8   0.0     0.011        14       8      45 ..     197     234 ..     191     237 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0015
                  ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEE CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakgvkkvvva 42
                  +l++ ++ +iGaG ++   a h + +g++ vv++
    CCE27838.1 40 ELSRPRIAIIGAGITGVTSAAHCVGHGFD-VVIF 72
                  678899*********************99.5554 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.011
                   S..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESS CS
  Shikimate_DH   8 eslkekkvlliGaGemaelvakhLlakgvkkvvvaNRt 45 
                   ++ k+k + +iG G  a ++++  +a+ + k+ ++ R+
    CCE27838.1 197 KNAKDKSIAIIGGGASAVEALEFAAAADAGKISILSRS 234
                   47899******************************998 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.3   7.3e-06    0.0087       2      34 ..      46      79 ..      45     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.3e-06
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S.-HHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdi.seea 34
                +a+iGaG+ G   aa ++ +g++Vv++d  ++e+
  CCE27838.1 46 IAIIGAGITGVTSAAHCVGHGFDVVIFDSgTKEQ 79
                8***************************844444 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0016       1.9      29      70 ..      36      77 ..      19      94 .. 0.85
   2 !    5.6   0.0    0.0075         9      23      68 ..     188     234 ..     179     244 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0016
                  GSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C 29 llgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70
                      els+ +++iiG+G  G + a  + + g++v+++d   k
    CCE27838.1 36 RADAELSRPRIAIIGAGITGVTSAAHCVGHGFDVVIFDSGTK 77
                  55679999*****************************98766 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0075
                   CHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSS CS
  2-Hacid_dh_C  23 wksekallgkelsgktvGiiGlGrIGqavakrlkafgm.kviaydrs 68 
                      +++l+gk+ ++k ++iiG G+ + ++ + ++a ++ k+ + +rs
    CCE27838.1 188 IYHSSQLTGKNAKDKSIAIIGGGASAVEALEFAAAADAgKISILSRS 234
                   4477899*************************999998777777766 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6   0.00028      0.34       2      35 ..      46      79 ..      45      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00028
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   + +iG+G+ G ++A+ +  +G +v++ + + + +
     CCE27838.1 46 IAIIGAGITGVTSAAHCVGHGFDVVIFDSGTKEQ 79
                   67************************99987755 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3    0.0003      0.36       2      34 ..      45      77 ..      44      81 .. 0.93
   2 ?   -1.0   0.4      0.45   5.4e+02       2      19 ..     203     220 ..     202     236 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0003
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakk 34
                 ++++iG+G  G+  A+++  +g +V+++++++k
   CCE27838.1 45 RIAIIGAGITGVTSAAHCVGHGFDVVIFDSGTK 77
                 689**************************9875 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.45
                  SEEEE--SHHHHHHHHHH CS
  HI0933_like   2 dviviGgGaAGlmaAisa 19 
                  ++++iGgGa+ + a + a
   CCE27838.1 203 SIAIIGGGASAVEALEFA 220
                  689******987665544 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.3    0.0062       7.4       1      39 [.      45      80 ..      45      95 .. 0.88
   2 ?    2.4   0.4       0.2   2.4e+02       2      36 ..     204     235 ..     203     239 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0062
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCH CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpeka 39
                   +i+iiGaG  g + a  ++ +g    ++v+  s ++e++
     CCE27838.1 45 RIAIIGAGITGVTSAAHCVGHG---FDVVIFDSGTKEQL 80
                   79********************...99999988888776 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.2
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSC CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnp 36 
                    i+iiG+G  +   ++ ++aa+  + +i +  sr+ 
     CCE27838.1 204 IAIIGGGASAVEALEFAAAAD--AGKISIL-SRSD 235
                    9******99988888788887..7777755.7765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3647.83
//
Query:       CCE27839.1  [L=527]
Description: related to transporter-like protein CTL2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-84  283.4  19.9    2.4e-84  283.4  19.9    2.2  2  Choline_transpo  Plasma-membrane choline transporter
  ------ inclusion threshold ------
       0.08   13.6   4.7       0.23   12.1   4.7    1.8  1  Pex14_N          Peroxisomal membrane anchor protein (Pex14p)
       0.23   11.1   0.0       0.74    9.5   0.0    1.8  1  Cytochrom_NNT    NapC/NirT cytochrome c family, N-terminal re
       0.52   10.0   3.3          2    8.1   0.0    2.7  3  TMEM240          TMEM240 family
        1.3    8.6   3.3          3    7.4   3.3    1.6  1  SARAF            SOCE-associated regulatory factor of calcium


Domain annotation for each model (and alignments):
>> Choline_transpo  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   3.3     0.043   1.6e+02      46     113 ..      74     139 ..      72     171 .. 0.62
   2 !  283.4  19.9   6.6e-88   2.4e-84       1     325 [.     178     499 ..     178     500 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.043
  Choline_transpo  46 lltllllllvsafwivvavalylassgestdkvnsgsesglaavefesss...kvkalllyllfgllWtle 113
                      ++  +l++l++a ++vv+ al++ ++ + + +  +g  +g+  ++f++++    ++ l l+l f l W + 
       CCE27839.1  74 IWAGILMILFFAGFVVVS-ALTIRKYVTGS-HR-GGIYGGN--NNFSLNNnsiILFSLGLALAFLLSWAYL 139
                      677788999999777766.23233333333.22.3333333..2333333000344455667777777654 PP

  == domain 2  score: 283.4 bits;  conditional E-value: 6.6e-88
  Choline_transpo   1 iillivavllllllivlrkrirlaiallkvaskaiksnpslllvplltllllllvsafwivvavalylassgestdkvnsgsesglaavefess 94 
                      i++l++++++++ ++ ++ ri++++ +l++++++ k++ ++++v+l+  ++++++sa+++v++ a+y   + +++++ n +++ g+  +++ s+
       CCE27839.1 178 IVFLVFGLFTAFAFWTWIPRIPFSALMLRATIDVSKKHGHVYMVSLIGGVIAIAFSAWFSVTLTAIY---VAYEPSSDNPHCKRGD--NSC-SK 265
                      79*************************************************************9998...4444444455666666..345.79 PP

  Choline_transpo  95 skvkalllyllfgllWtleflralqqvtvagavasWYfskkkdlp...skfpvlkslkraltyhlGSialgSlilaivqllrlileylekklkk 185
                      +kv++l++++ f+++W+le+l++++++tvag +asWYfs+    +   +k ++++s +ralty++GSi lgSl++ai+q+lr+++++++++  +
       CCE27839.1 266 AKVIGLIVFVSFTMYWILEWLKNTIHTTVAGLYASWYFSP----AgqfPKGATRGSARRALTYSFGSISLGSLVIAIIQFLRQLCSIARQQSMD 355
                      ***************************************3....22345567**********************************97777776 PP

  Choline_transpo 186 k...enavak.cllcclkcclwclekflkflnrnayimvaiyGksFcesakdafellkrnglrvavldsvvdfvlflgkllialltgliaylll 275
                      +      +   +l+c+l c++++le+ ++f+n++a++++a+yGks++++akd+++l+k++g++++v+d++++ vl +g+++i+++t+l+ayl+l
       CCE27839.1 356 DgglLGMA-GyVLFCILGCLISLLEWAVQFINKYAFCHIALYGKSYFHAAKDTWHLIKDRGIDALVNDCLIGPVLSFGAMFIGAVTALFAYLYL 448
                      66643333.259*****************************************************************************98777 PP

  Choline_transpo 276 katltnpe.elnsplvpllvvfiiayliasiflsvyesavdtifvcfaeDp 325
                        t+   + + ++++v+++++f++a++i+ if++ ++s+vdtifv+  +Dp
       CCE27839.1 449 IFTDPGYNkDGSYTPVIVAFAFLMAFQIGLIFTTPISSGVDTIFVAAGWDP 499
                      7554444467888999*******************************9998 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.7   6.3e-05      0.23      77     153 ..       7      99 ..       1     100 [. 0.53

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.3e-05
     Pex14_N  77 pqpqaasqtsqsspspsppaqqqqqqy..rpPivtypefltk...ppkppppPlr..........................twrdllitatalaglgag 144
                 +qp+++ q+              qqq   ++P+ +y++ + +   ++  +ppP+                            w ++l+++  +ag+ ++
  CCE27839.1   7 QQPPPPPQQ--------------QQQWggQQPQDYYNQGQDQngyQQYGQPPPYSynppkesdpnysfdqafkiekpkyndIWAGILMIL-FFAGFVVV 90 
                 111111122..............22223455555555555444544444455555555555888888**********8775566655554.55566666 PP

     Pex14_N 145 lyglskryi 153
                  + ++++y+
  CCE27839.1  91 SALTIRKYV 99 
                 666666666 PP

>> Cytochrom_NNT  NapC/NirT cytochrome c family, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00021      0.74      13      73 ..     366     425 ..     357     442 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00021
  Cytochrom_NNT  13 lvgvvvgvvflggfntaleatsteeFCvsCHemednveeykesiHysnrsgvraeCsdCHv 73 
                    ++++++g ++++  ++a++  ++ +FC      ++ +++ k++ H    +g+ a  +dC +
     CCE27839.1 366 VLFCILG-CLISLLEWAVQFINKYAFCHIALYGKSYFHAAKDTWHLIKDRGIDALVNDCLI 425
                    3344444.5567899************999999999***********************66 PP

>> TMEM240  TMEM240 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2     0.054   1.9e+02      91     107 ..     125     141 ..     107     167 .. 0.77
   2 ?   -4.2   0.1       3.3   1.2e+04     127     134 ..     191     198 ..     189     203 .. 0.86
   3 ?    8.1   0.0   0.00056         2      88     120 ..     265     299 ..     245     308 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.054
     TMEM240  91 vlglllgfiiswlllwl 107
                  lgl l f++sw  l l
  CCE27839.1 125 SLGLALAFLLSWAYLTL 141
                 58999*******87655 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 3.3
     TMEM240 127 swswlpkl 134
                  w+w+p++
  CCE27839.1 191 FWTWIPRI 198
                 5*****97 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00056
     TMEM240  88 ldlvlgll..lgfiiswlllwldgvlhlavrawra 120
                    v+gl+  + f + w+l wl   +h++v    a
  CCE27839.1 265 KAKVIGLIvfVSFTMYWILEWLKNTIHTTVAGLYA 299
                 445666642279****************9976655 PP

>> SARAF  SOCE-associated regulatory factor of calcium homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.3   0.00083         3     186     254 ..       7      78 ..       1     103 [. 0.60

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00083
       SARAF 186 ereaeaeggrrgegggggggggg..pgseeeq.ddpPppysltksqkpssssessqqgeqeeswrpGFWtGl 254
                 +++ ++ ++++++gg++ ++  +  ++++++q  + Pppys++ +++++ + +  q  + e+ + +  W G+
  CCE27839.1   7 QQPPPPPQQQQQWGGQQPQDYYNqgQDQNGYQqYGQPPPYSYNPPKESDPNYSFDQAFKIEKPKYNDIWAGI 78 
                 222222333333333333332222233333334778888876666555544444777777888888999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1067  (0.0595125); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3874.10
//
Query:       CCE27840.1  [L=510]
Description: probable lysine permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.9e-136  454.4  46.3   4.8e-136  454.1  46.3    1.0  1  AA_permease    Amino acid permease
    3.7e-35  121.6  51.3    4.8e-35  121.2  51.3    1.2  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
      0.054   12.3   0.1       0.15   10.9   0.1    1.7  1  DUF4781        Domain of unknown function (DUF4781)


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  454.1  46.3  8.1e-140  4.8e-136       1     475 [.      38     496 ..      38     499 .. 0.98

  Alignments for each domain:
  == domain 1  score: 454.1 bits;  conditional E-value: 8.1e-140
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ia+g  +Gtglf+g+g +ls+ Gp+++lla++ +g+ ++ vm++lge+a ++p++g+f++yasrf++p lGf++G++y+fsw ++++leltaa+
   CCE27840.1  38 HLQFIAIGATFGTGLFLGTGTALSNSGPASLLLAFIAVGALVYSVMVALGEMAAYMPVAGAFTVYASRFVDPTLGFAMGWIYWFSWSITYGLELTAAG 135
                  99************************************************************************************************ PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                   +iq+w  +++++ + +++a+f+v+++++n++ vk +ge+e+++++ik+i++i+fii+ i+++ag + ++g+ gf++++++g+ fk++l++g    + 
   CCE27840.1 136 LIIQLW--NDSIS-IGIWIAIFWVIFTAVNFFPVKHFGEMEMWFSSIKVITVIGFIIFAICVNAGVG-QQGYiGFKYWTYPGA-FKEYLVEG----SA 224
                  ******..88888.*********************************************88888877.55556**********.********....88 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlapli 292
                  g f +f sv+v++ f+++G elv+i agE+++P+k+iP+ai+++++ i  ++v  ++++g+ +p ++++l n++ ++ asp+vi+ k +gv+vl+++i
   CCE27840.1 225 GKFVGFWSVLVTAGFSYQGSELVGIGAGETENPRKAIPRAIKSTFWGICTLFVATVFFVGINIPSDNPDLQNGATNGsASPLVIVAKLAGVKVLPDII 322
                  89**********************************************************************999999******************** PP

  AA_permease 293 naviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrf 390
                  nav+lta+ls+a+s +ys++R+ly+la++glaP+++kk +k+g P+ +++++++++lla+l+ s + +  +vf++ll+i+a++g+ivw li++++lrf
   CCE27840.1 323 NAVLLTAVLSAASSDIYSSTRILYALADEGLAPACFKKTNKYGTPYWSVVFCSLLGLLAFLNLSEKGG--TVFKWLLNITAVAGFIVWALINVCHLRF 418
                  ********************************************************************..**************************** PP

  AA_permease 391 Rkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrp 475
                  +k l  +g++ ++l+++a+ +p++++l+++++++ill+ +++ +++       w++++f+a+y+++llf+++++g+kl++++k  
   CCE27840.1 419 MKVLASRGINRSSLPYTAPWQPYLSWLGFIFNVLILLTSGFTVFIK-------WSTSDFFASYVSLLLFVVLYLGHKLYFRTKMV 496
                  **********************************************.......****************************9876 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2  51.3     8e-39   4.8e-35       6     404 ..      39     459 ..      34     486 .. 0.76

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 8e-39
  AA_permease_2   6 afalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsva 99 
                    + +++ig+++g+g f  +  ++ + gpa++l  +iav++++++v+ ++ E+++ +p  g   vy++++  + ++f ++w++wf+++++  +    a
     CCE27840.1  39 LQFIAIGATFGTGLFLGTgtALSNSGPASLLLAFIAVGALVYSVMVALGEMAAYMPVAGAFTVYASRFVDPTLGFAMGWIYWFSWSITY-GLELTA 133
                    5699************98866667***************************999*********************************87.445556 PP

  AA_permease_2 100 asyllnalgpdlqgntwltyliaiailil.valinirgikesakiqnilgilkillpliiliilglitvdgggfssl........stetdtffpng 186
                    a+ ++++++      + ++++i iai+++ ++++n + +k+ + + ++   +k+ +++i +ii+++++  g g++          +++ +  + +g
     CCE27840.1 134 AGLIIQLWN------DSISIGIWIAIFWViFTAVNFFPVKHFGEMEMWFSSIKV-ITVIGFIIFAICVNAGVGQQGYigfkywtyPGAFKEYLVEG 222
                    666666676......3467888888887516789********************.56666666666665554444335756655544444455567 PP

  AA_permease_2 187 wpg....vllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei....anlsnlgsvaalffeavggkvv 272
                    + g    ++++l ++ +s++G e +   + e ++  k +p+ai + +  ++ l++ + +++ + +p d+       ++++ s++ ++++ +g kv+
     CCE27840.1 223 SAGkfvgFWSVLVTAGFSYQGSELVGIGAGETENprKAIPRAIKSTFWGICTLFVATVFFVGINIPSDNPdlqnGATNGSASPLVIVAKLAGVKVL 318
                    77654446999999*****************5555389*****7776666666555555555556666666665445668889************* PP

  AA_permease_2 273 aiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgliisyllli 366
                      i+++++  ++l a+ + +++s+r+l+ala +g  P  f+k+nk+g+p+ ++++  ++ l+ +l ++     ++ + +ll++++++ +i+++l+ 
     CCE27840.1 319 PDIINAVLLTAVLSAASSDIYSSTRILYALADEGLAPACFKKTNKYGTPYWSVVFCSLLGLLAFLNLS--EkgGTVFKWLLNITAVAGFIVWALIN 412
                    **************************************************999999999865553333..3679*********************9 PP

  AA_permease_2 367 igalilrkkrphl..kr.......pgkilvaiigalfllfllvalff 404
                    ++ l   k    +  +r       p+ + ++++g++f++++l +  f
     CCE27840.1 413 VCHLRFMKVLASRgiNRsslpytaPWQPYLSWLGFIFNVLILLTSGF 459
                    99885555544333355677555544444555555555444432221 PP

>> DUF4781  Domain of unknown function (DUF4781)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   2.5e-05      0.15     108     175 ..     310     382 ..     291     387 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.5e-05
     DUF4781 108 aa....latP.vaapvllaalvvgvgsavYstgRsiqrLvDrstHeesisltdrearnswLgvaagvvglgaa 175
                 a      ++P +   vll+a++ +++s +Ys +R  + L+D +      + t++   + w  v+ +++gl+a 
  CCE27840.1 310 AKlagvKVLPdIINAVLLTAVLSAASSDIYSSTRILYALADEGLAPACFKKTNKYGTPYWSVVFCSLLGLLAF 382
                 3322334566744455666699999********************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 3268.78
//
Query:       CCE27841.1  [L=46]
Description: uncharacterized protein CPUR_01315 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       146  (0.00814323); expected 358.6 (0.02)
Passed bias filter:                      124  (0.00691617); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 355.41
//
Query:       CCE27842.1  [L=285]
Description: uncharacterized protein CPUR_01316 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-14   54.0   0.0    3.2e-14   52.9   0.0    1.5  1  Pkinase_Tyr  Protein tyrosine kinase
      7e-14   51.8   0.0      1e-13   51.3   0.0    1.3  1  Pkinase      Protein kinase domain
  ------ inclusion threshold ------
      0.068   12.8   0.0       0.11   12.1   0.0    1.3  1  RIO1         RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   5.3e-18   3.2e-14      96     244 ..      98     236 ..      58     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 5.3e-18
                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGv 193
                    e++++++ l ++ + A+G+++++sk lvH d+a+ N ++s +  vki DfG ++         + +ea + ++W+   sl +   +++sD+++fG 
   CCE27842.1  98 PAESVDVDQRLIWIRDAAEGLRHIHSKGLVHADVACTN-MVSVQGRVKIIDFGGCSI--------DGSEAITGYNWYNKRSLVSP--NVESDIFAFGC 184
                  57889999******************************.68889*********8763........57888999*****9999876..679******** PP

                  HHHHHHTTSSGTTTTSHHHH....HHHHHHTTEES-BBTTSBHHHHHHHHHHT-S CS
  Pkinase_Tyr 194 llwEiftlgespypglknee....vleklkegkrlekpekcpeelyelmkkcwee 244
                   ++Ei+t g+ p+++l+n      ++++l ++k+   pe     l elm  cw+ 
   CCE27842.1 185 AVYEILT-GKPPHHRLENVAergeLVRRLYAEKQF--PEVDGLPLRELMLACWHG 236
                  *******.****99985543112244444444444..44446679********96 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   1.7e-17     1e-13      42     201 ..      45     200 ..      19     230 .. 0.75

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 1.7e-17
                 HHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH......HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET CS
     Pkinase  42 ekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladlle......rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLide 133
                 +++++ E     +l  h nivr ++   e+de  ++le  e  +l  + +         s++ ++   +++  +egl+++Hskg++H D+   N+    
  CCE27842.1  45 DESIAVERLAYDRLGtHCNIVRRLG---EPDEKSFLLERGEPLSLLIRARgtrcakPAESVDVDQRLIWIRDAAEGLRHIHSKGLVHADVACTNMVSV- 139
                 4566677777777777888888765...44444555566554443333334444334445666677789999**********************9888. PP

                 TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSS CS
     Pkinase 134 kgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgek 201
                 +g +Ki+DFG ++   s+     ++g  +Y    +++ n    ++D+++ G+ +ye+ltgkpp +  +
  CCE27842.1 140 QGRVKIIDFGGCSIDGSE----AITGYNWYNKRSLVSPN---VESDIFAFGCAVYEILTGKPPHHRLE 200
                 **********99876664....699999**999999655...689******************98433 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.8e-05      0.11     121     150 ..     120     149 ..      95     154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.8e-05
                 HHHTSTEEESS-STTSEEEETTEEEE--GT CS
        RIO1 121 lykeaglvHaDLSeyNvlvdedkvviIDvs 150
                  ++  glvHaD+   N++  +++v iID++
  CCE27842.1 120 HIHSKGLVHADVACTNMVSVQGRVKIIDFG 149
                 45689***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2077.28
//
Query:       CCE27843.1  [L=1298]
Description: related to alpha-aminoadipate reductase large subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-74  249.7   0.0    6.3e-74  249.1   0.0    1.3  1  AMP-binding      AMP-binding enzyme
    4.1e-66  222.8   0.0    6.8e-64  215.5   0.0    2.3  2  NAD_binding_4    Male sterility protein
      4e-51  173.3   0.4    1.3e-50  171.6   0.1    2.0  2  adh_short        short chain dehydrogenase
      1e-40  139.8   0.3    6.5e-40  137.1   0.2    2.1  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.2e-20   74.2   1.1    4.2e-17   62.6   0.7    2.4  2  KR               KR domain
    9.2e-17   61.3   0.1    5.6e-11   42.4   0.0    3.1  3  Epimerase        NAD dependent epimerase/dehydratase family
    4.4e-11   43.0   0.1    1.3e-10   41.5   0.0    1.8  1  PP-binding       Phosphopantetheine attachment site
    8.5e-07   28.3   2.6    0.00016   20.9   0.0    3.4  3  RmlD_sub_bind    RmlD substrate binding domain
    9.2e-07   28.3   0.1    0.00091   18.4   0.0    3.1  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    3.6e-05   24.7   0.4     0.0001   23.2   0.4    1.9  1  AMP-binding_C    AMP-binding enzyme C-terminal domain
    6.9e-05   22.0   0.0      0.032   13.3   0.0    3.0  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    0.00048   20.1   0.6       0.53   10.2   1.4    4.0  2  NAD_binding_10   NAD(P)H-binding
     0.0026   17.2   0.0       0.62    9.4   0.0    2.4  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
       0.11   11.9   0.0        0.3   10.4   0.0    1.7  1  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
       0.13   12.1   0.3       0.24   11.3   0.3    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.18   11.6   1.5       0.78    9.5   1.5    2.0  1  DFP              DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.1   0.0   5.6e-77   6.3e-74       1     423 []      14     418 ..      14     418 .. 0.88

  Alignments for each domain:
  == domain 1  score: 249.1 bits;  conditional E-value: 5.6e-77
                  HHHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding   1 leeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98 
                  +e+qa+ tp+++al d  + ++lTY+eld+++ +lA  Lr+ Gv+++  V++l+ +s++ vva la+l+aG+++ +l  +++a+ l+ +++d+ ++v+
   CCE27843.1  14 FEQQAQLTPQAIALED--DKRSLTYAELDSETWALAERLREYGVGRDCLVGVLMSRSADNVVASLAALRAGGAYLVLELAYPAALLRDVIDDASPTVI 109
                  799***********77..9******************************************************************************* PP

                  EETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHC CS
  AMP-binding  99 iatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletr 196
                  +  ++++ + + l++ ++      viv+d+ +++  +++++ +e +     p+ ++  + d la++ Y+SGTTGkPKG+   hr+ v+++    +   
   CCE27843.1 110 L--TQKAHAGN-LAHVSA-----PVIVVDDPDMRVGAQEPILAEHK-----PPLPADDDLDRLAFVSYSSGTTGKPKGIANPHRASVCSYDL-RFGL- 192
                  *..76655333.333333.....48999999999999988888655.....345667899***********************999999555.4322. PP

                  SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEEEEESS CS
  AMP-binding 197 fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslrlvllgge 293
                   +l+++d+v +       + +++e+l +ll+Gat v +p +a  dp+ll+e++++ k+t +  +P++l  +l+ +++l+     + l+ l+ ++l ge
   CCE27843.1 193 SDLQPGDRVAC------NVFFTWEMLRPLLRGATTVAVPDSASYDPELLVEFLAARKITDTLMTPTLLATVLArHSSLA-----ETLPDLKSLWLNGE 279
                  33667999853......3333467899************9999**************************9999787776.....48999********* PP

                  -EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEE....CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHH CS
  AMP-binding 294 plspellrffralfge.evlegYGlTEttgvvtv....lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeata 386
                   +  +l r++ a ++  ++l++Y  +Et  v++     +   + ++++  vG+p+  + ++i+De+ g++v  g++Gel+v+g  +++gYl+ pe t 
   CCE27843.1 280 VVTTDLCRRAFAALPSvRLLNVYSASETHEVAAGdiktFI--DYEARVCPVGPPMDANTIYILDEA-GNRVDVGVSGELYVGGDMLARGYLNLPETTT 374
                  **************99***************955554333..33345666***************9.9****************************** PP

                  HHEEE.......TCCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 387 eafds.......egrwlrTGDlgrldedGyleivgRkkdliklr 423
                  +af         e r++rTGDl+r+ + G lei+gR   +ik+r
   CCE27843.1 375 KAFQMdpfsaapEARMYRTGDLARILPSGLLEIMGRVGGMIKTR 418
                  ***846888985477***************************86 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.5   0.0   6.1e-67   6.8e-64       1     257 []     657     898 ..     657     898 .. 0.94
   2 !    5.1   0.1    0.0096        11       1     120 [.    1054    1171 ..    1054    1236 .. 0.80

  Alignments for each domain:
  == domain 1  score: 215.5 bits;  conditional E-value: 6.1e-67
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHH.....HHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EE CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksge.....saeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdvi 91 
                    lTGaTG+LG++Ll+ LL++t++ +i++l+R  + +     ++ +R++++l +++++++++   +er++vv+G+ls++rlGLs+e++ ela+++dvi
     CCE27843.1 657 LTGATGYLGAFLLKSLLENTSA-NIMCLIRFPDPNvdcrpAGIARIRKNLIDQGIWDDAM---LERMEVVPGNLSRNRLGLSPEAFSELASRLDVI 748
                    8*******************97.*******8877667777999****************6...********************************* PP

                    EE--SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHH CS
  NAD_binding_4  92 ihsaAtvnfdepykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEkl 186
                    +h aAtvn+++py  l+ +Nv Gtre+l+la+++ ++  ++hvST +++ + r+ +++e+             d ++  ++lp++Y q+K++aEkl
     CCE27843.1 749 VHAAATVNLVYPYAALRGANVGGTREILRLAARGGAT--VHHVSTnGVLPPSRS-AWTEE----------SMLDIKDVPTKLPDGYGQTKWVAEKL 831
                    ********************************77666..******777777777.67665..........5567888899**************** PP

                    HHHHHHHH---EEEEEE-EEE--SSST---TTSHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHHH CS
  NAD_binding_4 187 vrearrrsglpvvivRpsiitgesktGwingsdlgirgllgliakgvlpeilgdkeavldlvpvDyvanai 257
                    v ea+rr g+pv+++Rp++i g+s+tG++n+ dl+ ++++ +   g  p++ ++    ++++pvD+v++ai
     CCE27843.1 832 VYEAGRR-GMPVTVYRPGTISGHSVTGATNTYDLLSALIVESLHLGFAPQVDYWL---AEMTPVDFVSQAI 898
                    *****98.**********************************************8...**********997 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0096
                     EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGG..GG--HHHHHHHHHH--EEE CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlsepr..lGLseedlqelaeevdvii 92  
                     +TGa+  +G+ + +k  r+ +  +i+l +R +++   +e+++++l  ++   a    ++++i + ++D+s ++    L +++ ++l   vd+ +
     CCE27843.1 1054 ITGASSGIGAAVAAKFAREGA--RIVLAARRTDE---LEKVKAKLLASSSS-A----TRSKILIHQTDVSSQDqvQSLIDTTTEQL-GPVDILV 1136
                     89*****************98..8******9987...88887776666554.3....369*********98884457888888888.9999999 PP

                     E--SS-S.ST.......TSSEEHHHHHHHHHHHHH CS
  NAD_binding_4   93 hsaAtvnfde.......pykellrvNveGtrevle 120 
                      +a+ + f+        + ++ +++N +G  ++l+
     CCE27843.1 1137 SCAGVMYFTMmancltdEWDRTVDINCKGLLHCLS 1171
                     99999988753333333566677777777777765 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         2   2.3e+03       2      30 ..     654     682 ..     653     686 .. 0.86
   2 !  171.6   0.1   1.1e-53   1.3e-50       2     188 ..    1051    1242 ..    1050    1249 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEE CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvv 30 
                 ++l tGa++ +G  + k l+++    +++
  CCE27843.1 654 TILLTGATGYLGAFLLKSLLENTSANIMC 682
                 79****************99998777776 PP

  == domain 2  score: 171.6 bits;  conditional E-value: 1.1e-53
                  EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short    2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93  
                  v+++tGassGIG a+a ++a+eGa++v+++r+ ++le+v+++l +      ++k+l+ q+Dv+++++v+ l+++  ++lg++d+Lv +AG+  ++++
  CCE27843.1 1051 VAVITGASSGIGAAVAAKFAREGARIVLAARRTDELEKVKAKLLASsssatRSKILIHQTDVSSQDQVQSLIDTTTEQLGPVDILVSCAGVMYFTMM 1147
                  89****************************************9988766566779****************************************** PP

                  GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short   94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188 
                  ++   +ew+r++++N +g++++  a lp +l+++ G+Iv +sS ag+ +++g+ +YsAsK+++++  r+l+ e a +g rv++++PG vdT++ +
  CCE27843.1 1148 ANCLTDEWDRTVDINCKGLLHCLSATLPSFLARKTGHIVAISSDAGRAAFPGLGVYSASKFFIEATLRALRLETAGSGLRVTSIQPGNVDTGLLA 1242
                  *******************************************************************************************9876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.6   6.8e+02      65      82 ..     740     757 ..     735     802 .. 0.77
   2 !  137.1   0.2   5.8e-43   6.5e-40       1     213 [.    1056    1273 ..    1056    1281 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.6
                   HHHSSEEEEEE-----EG CS
  adh_short_C2  65 ekfgklDilvnnagiapk 82 
                   e   +lD++v++a+ ++ 
    CCE27843.1 740 ELASRLDVIVHAAATVNL 757
                   555799******999876 PP

  == domain 2  score: 137.1 bits;  conditional E-value: 5.8e-43
                    TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTT.SE...E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GG CS
  adh_short_C2    1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelg.ae...v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfl 88  
                    Ga sgIG+a+A ++a+eGa++vl+ ++ ++ +k  ++l ++ + a+   +   ++DV++++qv++l+++++e++g +Dilv +ag++    + ++
    CCE27843.1 1056 GASSGIGAAVAAKFAREGARIVLAARRTDElEKVKAKLLASSSsATrskIliHQTDVSSQDQVQSLIDTTTEQLGPVDILVSCAGVMYF--TMMA 1148
                    899*********************99999975555555555442223344679************************************..99** PP

                    GH-HHHHHHHHHHHTHHHHHHHHHHHH..HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGG CS
  adh_short_C2   89 etsreefdraldvnlyslfllakaalp..lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasg 181 
                    ++  +e+dr++d+n+++l++++ a lp  l++++g iv++ss +++ ++p+  +y+a+K  +ea+ r+l  e +  g Rv ++ pg ++T + + 
    CCE27843.1 1149 NCLTDEWDRTVDINCKGLLHCLSATLPsfLARKTGHIVAISSDAGRAAFPGLGVYSASKFFIEATLRALRLETAGSGLRVTSIQPGNVDTGLLA- 1242
                    ***************************9777777**********************************************************87. PP

                    STTHHHHHHHHHHHSTTSS.-B-HHHHHHHHHH CS
  adh_short_C2  182 ikgfdelleelearaplgr.lgtpeevaeaalf 213 
                    i+  +e le+  +  p g  + ++e+va a+l+
    CCE27843.1 1243 ISTDPEALEKYGE--PTGAkVLEAEDVAGAILW 1273
                    5556666666654..5555256********997 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0008       0.9       2      36 ..     654     688 ..     653     756 .. 0.84
   2 !   62.6   0.7   3.7e-20   4.2e-17       4     174 ..    1053    1232 ..    1051    1238 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0008
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS.. CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaa 36 
                 t l+tG++G LG  l + l+e+  +++++l R + 
  CCE27843.1 654 TILLTGATGYLGAFLLKSLLENTSANIMCLIRFPD 688
                 679*************************9998753 PP

  == domain 2  score: 62.6 bits;  conditional E-value: 3.7e-20
                  EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHH.HHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TT CS
          KR    4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedsk.aliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle 98  
                  +itG+  g+G ++a   a++gar +vl +R+  + e+ k +l+a+ ++    ++ + + Dvs++d+v++l+++ +++ +p+   + +Agv+  ++++
  CCE27843.1 1053 VITGASSGIGAAVAAKFAREGAR-IVLAARRTDELEKVKaKLLASSSSAtRSKILIHQTDVSSQDQVQSLIDTTTEQLGPVDILVSCAGVMYFTMMA 1148
                  8********************98.66666665544444404554444433779******************************************** PP

                  T--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH....HHHHTEEEEE CS
          KR   99 emtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrr....sqglpavsin 174 
                  ++ ++++++ +   +kG+ +   ++ +    ++  ++v +SS ag    +g + Y+a   f++a  +  r     +gl+++si+
  CCE27843.1 1149 NCLTDEWDRTVDINCKGLLHCLSATLPsflaRKTGHIVAISSDAGRAAFPGLGVYSASKFFIEATLRALRletaGSGLRVTSIQ 1232
                  *****************988666655558889*******************************988776511114566677776 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0     5e-14   5.6e-11       1     190 [.     655     869 ..     655     895 .. 0.81
   2 !   15.3   0.0   9.2e-06      0.01       2     172 ..    1053    1236 ..    1052    1237 .. 0.77
   3 ?   -3.2   0.0       4.2   4.7e+03     215     231 ..    1264    1280 ..    1262    1286 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 5e-14
                 EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC.....................EEEE--TT-HH......HHHHHHHHHT-SEEEE- CS
   Epimerase   1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl.....................elveldltdrs......alerlfkeeqpdavihl 71 
                 il+tGatG++G+ l+k lle++  ++++l r ++ +   r + +                     e+v ++l  +       a+ +l +  + d+++h+
  CCE27843.1 655 ILLTGATGYLGAFLLKSLLENTsANIMCLIRFPDPNVDCRPAGIarirknlidqgiwddamlermEVVPGNLSRNRlglspeAFSELAS--RLDVIVHA 751
                 89********************666******9777766666666999******************777777777666643335666555..9******* PP

                 -S---HHHHHHSHHHHHH.HHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSS.SBSTCSTTS--..--SSHHHHHHHHHHHHHHHHHHHHT-EEEE CS
   Epimerase  72 Aavggvaassedpadfie.knlqgtlnlleaarkagvkrllflsSsevYGkdaeq.pkeettltgpl..kpnspYaaaKlageklveayaaqyglnaii 166
                 Aa     ++  +p + ++ +n+ gt+++l  a + g+  ++++s+  v +++ +   +e++++ + +  k    Y+ +K  +eklv ++ + + +++++
  CCE27843.1 752 AA----TVNLVYPYAALRgANVGGTREILRLAARGGA-TVHHVSTNGVLPPSRSAwTEESMLDIKDVptKLPDGYGQTKWVAEKLVYEAGRRG-MPVTV 844
                 99....56667777777778****************9.************999942355555444444477789**************99888.***** PP

                 EEESEEESTT.S-TTSTTSHHHHHH CS
   Epimerase 167 lrlfnlyGpr.ngegevsrvipali 190
                  r+ ++ G   +g ++   +++ali
  CCE27843.1 845 YRPGTISGHSvTGATNTYDLLSALI 869
                 *********9988888666666665 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 9.2e-06
                  EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC............EEEE--TT-HHHHHHHHHHH.....T-SEEEE--S---HHHHH CS
   Epimerase    2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl............elveldltdrsalerlfkee.....qpdavihlAavggvaass 81  
                  ++tGa+  iG+a++ +++++g +++  +r++++ ++ + + l             +++ d+  +++++ l++++      +d+ + +A+v      +
  CCE27843.1 1053 VITGASSGIGAAVAAKFAREGARIVLAARRTDELEKVKAK-LlassssatrskiLIHQTDVSSQDQVQSLIDTTteqlgPVDILVSCAGVMYFTMMA 1148
                  79*********************99999996655544444.36999*******999*********99999876432124479999999977777777 PP

                  HSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH...T-EEEEEEESEE CS
   Epimerase   82 edpadfieknlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy...glnaiilrlfnl 172 
                  +  +d +++++ ++ + l  +  a +  +l   + ++   + +      +    ++    Y+a+K  +e  ++a++ +    gl+++++ + n+
  CCE27843.1 1149 NCLTDEWDRTVDINCKGLLHCLSATLPSFLARKTGHIVAISSD------AGRAAFPGLGVYSASKFFIEATLRALRLETagsGLRVTSIQPGNV 1236
                  7777888888888888777777777779999999888885555......344467889999999999999999988776423478877777775 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.2
                  HHHHHHHHHHHHHHHTT CS
   Epimerase  215 veDvaeaillvlehvda 231 
                  +eDva ail+++++++ 
  CCE27843.1 1264 AEDVAGAILWAVTRPEY 1280
                  79**********99775 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   1.2e-13   1.3e-10       2      61 ..     543     602 ..     542     607 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.2e-13
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptla 61 
                 +++ ++a  l++p+++i+ ++++fdlG++Sl++++l++++ ++fg+++pl+ l   ptl+
  CCE27843.1 543 TIIKIWAASLNIPTSAISQSHTFFDLGGHSLTLADLAGRMTRTFGFPVPLAPLAGTPTLE 602
                 7999**********************************************9998899986 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       4.2   4.7e+03      60     190 ..     455     486 ..     426     493 .. 0.47
   2 !   20.9   0.0   1.4e-07   0.00016       3     154 ..     655     853 ..     653     925 .. 0.61
   3 ?    5.0   0.1      0.01        11       4      66 ..    1053    1117 ..    1050    1169 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.2
                    ----HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SSEEEEEE-SEESSS CS
  RmlD_sub_bind  60 AytavDkaEseeeaayavnaeavealAeaaaavgalLihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavlaagkkalivRtswvygek 155
                    Ay   Dk E+ ++    +++ +                                                                          
     CCE27843.1 455 AYVVPDKNETRNRTVLVIDESGYS------------------------------------------------------------------------ 478
                    444444444444444444444444........................................................................ PP

                    SS-HHHHHHHHHHH-SEEEEESS-EE--EEHHHHH CS
  RmlD_sub_bind 156 gknfvktmlrlakereelkvvaDqlgsPTsardlA 190
                                               P + r l+
     CCE27843.1 479 ---------------------------PVARRALS 486
                    ...........................44444444 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 1.4e-07
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE.-TT....................T--TTSHHHHHHHH....................HHH--SEEEE CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlal.tre....................eldltdaeavaell....................keakpdvvvn 57 
                    il+tGa+G lG  L k+l e+  + + +  r                     +  ++d + ++++                      + + dv+v+
     CCE27843.1 655 ILLTGATGYLGAFLLKSLLENTSANIMClIRFpdpnvdcrpagiarirknliDQGIWDDAMLERMEvvpgnlsrnrlglspeafseLASRLDVIVH 750
                    778888888888777776665444444314436777777777777777776633333333333332444555566666666666555668899*** PP

                    ------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-B-TTS---....-SSH...HHHHHHHHHHHHHHH-SS...E CS
  RmlD_sub_bind  58 aAAytavDkaEseeeaayavnaeavealAeaaaavgalLihvStDyVFdGekkrpYeeddets....Plnv...YGrtKlaGEqavlaagkk...a 143
                    aAA  +        +a   +n+ +++++ ++aa+ ga++ hvSt  V + +  ++++e++  +    P  +   YG+tK+  E+ v +ag +   +
     CCE27843.1 751 AAATVNLVY---PYAALRGANVGGTREILRLAARGGATVHHVSTNGVLPPS-RSAWTEESMLDikdvPTKLpdgYGQTKWVAEKLVYEAGRRgmpV 842
                    **9877643...45666789*****************************99.4457776543211125443444*************987652225 PP

                    EEEEE-SEESS CS
  RmlD_sub_bind 144 livRtswvyge 154
                    ++ R + + g+
     CCE27843.1 843 TVYRPGTISGH 853
                    66666666655 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.01
                     EEESTTSHHHHHHHHHCTTTSEEEEEE-TT..T--TTSHHHHHHHHHHH--SEEEE------HHH CS
  RmlD_sub_bind    4 lvtGanGqlGseLakqlaeeglevlaltre..eldltdaeavaellkeakpdvvvnaAAytavDk 66  
                     ++tGa+  +G ++a+++a+eg+ ++   r+  el+  +a+ +a+  ++++ +++++       D+
     CCE27843.1 1053 VITGASSGIGAAVAAKFAREGARIVLAARRtdELEKVKAKLLASSSSATRSKILIHQTDVSSQDQ 1117
                     79*******************99876666546555556666666667777777666544444443 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0047       5.3       1     118 [.     655     782 ..     655     799 .. 0.57
   2 !   18.4   0.0   8.1e-07   0.00091       2     171 ..    1053    1236 ..    1052    1239 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0047
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEE........ES-HHHHHHHHHH.......-TTEEEE....E--TT-HHH.H.HHHTT....T-SEE CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiill........erdElklyeieke.leeelkkkklkveivpvigdvrdker.l.ekaleel..kvdvv 81 
                      +l+tGa+G +G  l++ +l+++ ++i+ l        +     + +i+k+ +++ + ++ +  ++ +v g++  ++  l  +a++el  + dv+
       CCE27843.1 655 ILLTGATGYLGAFLLKSLLENTSANIMCLirfpdpnvDCRPAGIARIRKNlIDQGIWDDAMLERMEVVPGNLSRNRLgLsPEAFSELasRLDVI 748
                      799****************998888775412222211334445667777743333444444344444445554332212134555432267888 PP

                      EE------HHHHHHSHHHHHH.HHHHHHHHHHHHHHHT CS
  Polysacc_synt_2  82 fhaAAlKhVPlveenpleaik.tNvlgtenvieaaiea 118
                      +haAA+  V lv  +p+ a++  Nv gt+++++ a + 
       CCE27843.1 749 VHAAAT--VNLV--YPYAALRgANVGGTREILRLAARG 782
                      888886..4444..455555436788888887777654 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 8.1e-07
                       EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T.....-SEEEE----- CS
  Polysacc_synt_2    2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelk.....vdvvfhaAAlK 88  
                       ++tGa+  iG ++  +++++  ++i+l  r   +l +++ +l ++ + + ++ +i+   +dv  ++++++++++++     vd+++ +A + 
       CCE27843.1 1053 VITGASSGIGAAVAAKFAREG-ARIVLAARRTDELEKVKAKLLASSS-SATRSKILIHQTDVSSQDQVQSLIDTTTeqlgpVDILVSCAGVM 1142
                       69**************98876.679999999999*******765554.46778989999*********99998764334448999****999 PP

                       -HHHHHH....SHHHHHHHHHHHHHHHHHHHH....HTT-SEEEEEEEG..GGSS-.-SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE- CS
  Polysacc_synt_2   89 hVPlvee....npleaiktNvlgtenvieaai....eagvkkvvliStD..KAvnP.tnvmGatKrlaekllqalakeseekktkfvvvRfG 169 
                          ++ +    ++  +++ N  g  ++++a++    + +  ++v+iS+D  +A+ P   v+ a+K + e +l al+ e++ +  +++ +  G
       CCE27843.1 1143 YFTMMANcltdEWDRTVDINCKGLLHCLSATLpsflARKTGHIVAISSDagRAAFPgLGVYSASKFFIEATLRALRLETAGSGLRVTSIQPG 1234
                       9988876222256678999*******9999852222679999*******5545555379********************9999******999 PP

                       EE CS
  Polysacc_synt_2  170 NV 171 
                       NV
       CCE27843.1 1235 NV 1236
                       99 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.4     9e-08    0.0001       2      71 ..     427     506 ..     426     512 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 9e-08
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE---.---..........HHHHHHHHHHHHT-TTTS-SEEEE-S---B CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg.sea..........leeeLkahvrkelgpyavpkkvvfvdelpk 71 
                    vE a+v+h aV+ +aVv+  d ++ + lva+Vv++++ ++                ++ + ++l++y+ p   v ++elp 
     CCE27843.1 427 VETAVVKHLAVRACAVVARGDGLD-KQLVAYVVPDKNeTRNrtvlvidesgYSPVARRALSDHLAHYMIPTLWVELEELPT 506
                    9****************7777744.68*******54432223456655555445555556778999999999999999996 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.8e-05     0.032       3     162 ..     658     837 ..     656     862 .. 0.63
   2 ?    4.3   0.0     0.016        17       1      67 [.    1053    1125 ..    1053    1176 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-05
   3Beta_HSD   3 tGgaGFlGralvkeLvrlee...lkevrvlD.................lrespelleelskvnvkkviegDv......tdkdkleealegvdvvihlas 75 
                 tG++G+lG+ l k+L++  +   +  +r  D                 ++++ +   +   +++ +v+ g +      ++ +  +e     dv++h a+
  CCE27843.1 658 TGATGYLGAFLLKSLLENTSaniMCLIRFPDpnvdcrpagiarirknlIDQGIW---DDAMLERMEVVPGNLsrnrlgLSPEAFSELASRLDVIVHAAA 753
                 666666666666666665542223345555566666666664444322111111...122233333444444111111244566777778899999988 PP

   3Beta_HSD  76 lvdvagkltedeimkvnvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilng.dEeleyeslhqdaypesKalaEklvlkaNg 162
                  v++        +  +nv GTr++l  + + g + + ++S+ +v  p s++    ++  + + ++++  d y ++K +aEklv +a  
  CCE27843.1 754 TVNLVY--PYAALRGANVGGTREILRLAARGGAT-VHHVSTNGVLPP-SRSAWTEESmLDIKDVPTKLPDGYGQTKWVAEKLVYEAGR 837
                 877765..6677899************9998865.568888888888.333333322024456677799***************9966 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.016
   3Beta_HSD    1 vvtGgaGFlGralvkeLvrlee..lkevrvlD..lrespelleelskvnvkk..viegDvtdkdkleealegv 67  
                  v+tG++  +G+a+  ++ r++   +   r  D   + + +ll ++s+  + k  ++++Dv ++d+++  ++  
  CCE27843.1 1053 VITGASSGIGAAVAAKFAREGAriVLAARRTDelEKVKAKLLASSSSATRSKilIHQTDVSSQDQVQSLIDTT 1125
                  79999999*********99998555566777753222333444444444444789***********9887753 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.064        72       1      31 [.     659     689 ..     659     867 .. 0.67
   2 !   10.2   1.4   0.00047      0.53       1     183 [.    1056    1277 ..    1056    1278 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.064
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpek 31 
                     GAtG  G  l+k ll+++  ++  l+R p+ 
      CCE27843.1 659 GATGYLGAFLLKSLLENTSANIMCLIRFPDP 689
                     7888888888888888887777777776654 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00047
                      TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH..........CTTTCEEEE--TT-CCHHHHHHT.......T-SEEEES-........ CS
  NAD_binding_10    1 GAtGkvGrllvkellargghevtalvRnpeklaele..........aeeglevvegdvtdvedlaealk.......gadaVvsal........ 68  
                      GA+ ++G +++++ +++g  ++++ +R++++l++++           ++++ + + dv++++++++ ++        +d+ vs++        
      CCE27843.1 1056 GASSGIGAAVAAKFAREG-ARIVLAARRTDELEKVKakllassssaTRSKILIHQTDVSSQDQVQSLIDttteqlgPVDILVSCAgvmyftmm 1147
                      9****************5.9********99998554222222221133567788999999999999998888888788998888855555443 PP

                      --TCC......HHHH..........HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHH.HHHSSSEEEEEEE- CS
  NAD_binding_10   69 ggggk......deeg..........aknivdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeel.lrasgldwTivrpg 144 
                      +   +      d+++            +++    + ++ ++v +s+   +   pg +g   +++ k  ++a  +a +l    sgl  T ++pg
      CCE27843.1 1148 A---NcltdewDRTVdinckgllhcLSATLPSFLARKTGHIVAISSDAGRAAFPG-LGV--YSASKFFIEATLRALRLeTAGSGLRVTSIQPG 1234
                      1...133333433336675665555555566667788888888888433322222.333..344455566667777753455*********** PP

                      CEE-S..T.--SEEEEETTSS----EE.EHHHHHHHHHHHCTX CS
  NAD_binding_10  145 gLtde..p.ttkyrvvekgepfkggsi.sradVAdvlvavldd 183 
                          +  + +t+ +++ek  + +g+++ + +dVA +++ +++ 
      CCE27843.1 1235 NVDTGllAiSTDPEALEKYGEPTGAKVlEAEDVAGAILWAVTR 1277
                      *998866578888888775555555555999***999877765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0092        10       1      23 [.     656     678 ..     656     719 .. 0.86
   2 !    9.4   0.0   0.00055      0.62       2      74 ..    1054    1125 ..    1053    1128 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0092
                    EEETTTSHHHHHHHHHHHHCT-C CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgye 23 
                    L TG +G+ G++l++ Lle+   
     CCE27843.1 656 LLTGATGYLGAFLLKSLLENTSA 678
                    78****************98654 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00055
                     EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd    2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74  
                     iTG +  iG+ +a ++ ++g +++   rr+++++  + + la++ +  +++++ +h+ D++ ++++++l++ +
     CCE27843.1 1054 ITGASSGIGAAVAAKFAREGARIVLAARRTDELEKVKAKLLASSSS-ATRSKILIHQTDVSSQDQVQSLIDTT 1125
                     9****9**************************99888887777665.6789******************9875 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00027       0.3      33      76 ..    1046    1089 ..    1041    1112 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
                     --TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHH CS
  THF_DHG_CYH_C   33 elegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaei 76  
                      l+g+ +v+ G+s+ +g ++a+ +++++a + ++ ++t++l+++
     CCE27843.1 1046 RLAGRVAVITGASSGIGAAVAAKFAREGARIVLAARRTDELEKV 1089
                     68999***********************************9986 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00021      0.24       9      61 ..    1060    1113 ..    1050    1136 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00021
                  CCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCT.TTTSS-HHHHC CS
     3HCDH_N    9 tmGagiaavfasagleVvlvdiseealekalekieksleklv.ekgklkeeeve 61  
                   +Ga +aa fa++g ++vl  ++++ lek+++k+ +s +++  +k  +++ +v+
  CCE27843.1 1060 GIGAAVAAKFAREGARIVLAARRTDELEKVKAKLLASSSSATrSKILIHQTDVS 1113
                  48*****************************99987554443034444443333 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.5    0.0007      0.78      20      95 ..    1051    1144 ..    1049    1150 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0007
                  TEEEEE----HHHHHHHHHHHHTT-EEEEEE-S-.SS--...............-TT-EEEE--SHHHHHHHHHHHHTT-...SEEEE---S--E CS
         DFP   20 VRfisNrSSGkmGyalAeaaaarGaeVtlvsgpv.slet...............pegvevvkvesaeemleaveealkea...divimaAAvaDy 95  
                  V +i+  SSG  G+a+A+++a++Ga++ l +  + +le+               +  ++ ++v+s ++ ++ +++++++    di++++A v  +
  CCE27843.1 1051 VAVITGASSG-IGAAVAAKFAREGARIVLAARRTdELEKvkakllassssatrsKILIHQTDVSSQDQVQSLIDTTTEQLgpvDILVSCAGVMYF 1144
                  7789******.6******************99975665433344444444432111245566666666555554444332333777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.46
# Mc/sec: 8393.44
//
Query:       CCE27844.1  [L=1104]
Description: related to qde-1 RNA-dependent RNA polymerase (RdRP) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-122  409.5   0.0   3.3e-122  409.1   0.0    1.1  1  RdRP             RNA dependent RNA polymerase
     0.0013   18.7   0.1     0.0043   17.0   0.1    1.8  1  Phage_sheath_1C  Phage tail sheath C-terminal domain


Domain annotation for each model (and alignments):
>> RdRP  RNA dependent RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  409.1   0.0  3.7e-126  3.3e-122       8     583 ..     258     898 ..     253     901 .. 0.79

  Alignments for each domain:
  == domain 1  score: 409.1 bits;  conditional E-value: 3.7e-126
        RdRP   8 legpelek.snrvlRrfkegsdrFlrvkfpd.edgerldsedgeellkerv.kkvlkegiviagrkfeflafsdsqlre..............hsvwff 89 
                 l++++ ++ s+r+ Rrf  g drFl++++p+ ed      e++++  ++ +  + ++ +++++gr ++++++++  ++                + +ff
  CCE27844.1 258 LNPLRRTRsSHRLGRRF--GFDRFLEISMPSiED-----IEEATHCTDDSIkDWWVRGKHYFLGRLWSAFYCKKDDVKTqkrrgkgempsrtwYTFIFF 349
                 6666655559*******..************643.....22344455555679**********************99999*********6555444444 PP

        RdRP  90 ................apf.....eeegerisaeeirkw.lgdfenisqsvaKyaaRlglalSttrptvvkvereqiiieeid.Dv.kneekdiylftD 164
                                   +      +++ r+++ +++ w +gd+++++q+vaK+++R++l l++t+pt+v  e++qi   + + D+ k        ++D
  CCE27844.1 350 acngdsfrnrpdgsipP-HedaviLDRRVRVTLGQMIGWaIGDLRKTEQQVAKLFSRIALSLTDTTPTIVL-EKHQIY--HCPeDIgK------FPMND 438
                 99998888877766650.1555664456679********789***999*******************9777.889966..44425622......36*** PP

        RdRP 165 GvGliSrelarkiakklglkkaeelPsafQiRigGaKGvlavdkrl...kpek......ielrpSqiKfkseeddsekrtleivkvsskpkpayLnrql 254
                 G+G++S++la kia+ lgl    ++P+afQ R+g+aKG+++vd++    +  +      i ++pSq+K++ +++d ++ t+e +++++++kpa+Ln+q+
  CCE27844.1 439 GIGRMSKSLAIKIASCLGL---GDVPCAFQARFGSAKGMWLVDNEYtppN--MdddddwIVTYPSQRKWDCSYQDVHHCTFEALSWPKEAKPASLNQQF 532
                 *******************...689******************9996441..2346788**********88888************************* PP

        RdRP 255 ikiLedlgv....peev....flellkealeelrealkda...................gaaaell.kka....gdpskleellaelldsgfdpseldp 321
                 i++Le   +    ++e     +++ l+e l++l++a+++                    g     l +++    g p+++e+ +a+l+d+gf ps++ +
  CCE27844.1 533 IALLEAQAIdpmrMRELiaqyLRDCLREGLDDLKNAMQHPldlrywlqrtgggsradtaG----ALeDQQpilgGLPQRIEDKVASLVDAGFVPSQC-Q 626
                 *********7777444422225555566666666666666**************965441....554333467566*********************.* PP

        RdRP 322 flrsllkalvkeslrklkekarIpvpksatllgvaDetgvLkegevfvqlse.aldqedeksktkllkgd.vlVtRnPalhpgDiqvvkavdvpelrhl 418
                 fl++l+++l ++  + lk+k++I vp sa+l++v+D+  +Lke+ev+v +s+ +++  +++  ++ll+++ vlV R Pa+ p Diq+v+ v+ p lrhl
  CCE27844.1 627 FLQELCEKLGTQMAEMLKKKMNILVPCSAYLFMVVDFSSILKEDEVHVSFSTkFQVP-GFS--DTLLENMdVLVGRVPAHLPHDIQRVRVVSHPRLRHL 722
                 ***************************************************987454.555..67777777********************88****** PP

        RdRP 419 kdviVFstkGdrslaselsGGDlDGDkywViwdpe.le.f...apakpsneepadyee.........akpkeldrevtve.di.....adffveymksd 497
                 kdviVF+ +G+r+la++lsGGD+DGDk+wV+wd+  ++ f   +   +s +++ + ++         +    +++e + e ++      + ++  m+ +
  CCE27844.1 723 KDVIVFPIQGNRPLADKLSGGDYDGDKAWVCWDQAiVQnFrnaP---DS-AHDIQAPKvakfhlpmsQ----VRKEAQSEaEVcdrllYEGITFAMQPS 813
                 ***********************************999885421...22.222222224555555431....333322222334445644444556*** PP

        RdRP 498 vlGlisnahl.aiadqeegiddpkclkLaelhskaVDypKtGipvdkkeiprelkkpkekPdf.kekekkekakkpyykskkilgkLy 583
                  lGl+++++  ++ +   ++++p+++ ++ l+  +VD++K+G+ ++ ++ +  l k+ + P   k+   + + + ++  s +il++L 
  CCE27844.1 814 LLGLCTKYKDeYCRK-TGSLSSPQVIMMSLLLGLLVDQSKQGYIFTLDDWQALL-KQWSLPRSlKDGP-TGTFNPRSKPSLHILDYLQ 898
                 **********66666.6*****************************54433333.2333333323222.2223456678999999885 PP

>> Phage_sheath_1C  Phage tail sheath C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   4.8e-07    0.0043      16      66 ..     950     998 ..     944    1014 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.8e-07
                      HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHTTSB-S--S CS
  Phage_sheath_1C  16 dllrddirstfkkkylgkklnnddgralvksalnaylkelqregaienfdn 66 
                      d lrddi   +++  ++  +n+dd  + + ++++a+++++q++  +e +++
       CCE27844.1 950 DKLRDDINALITQ--WVSQPNSDDATETFEDTIKAFYEQWQNIQPLEKVQS 998
                      789**********..***************************998886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 7594.17
//
Query:       CCE27845.1  [L=730]
Description: uncharacterized protein CPUR_01319 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-15   55.6   0.5    6.7e-15   54.8   0.5    1.3  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.5   3.7e-19   6.7e-15      34     175 ..     221     357 ..     190     366 .. 0.78

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 3.7e-19
  Fungal_trans  34 yaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLh 130
                    +  + l+a+la+++++ es+++  +    ++sq++i+  + +  l   +f   ++s+ ++q+Lll ++++++  + ++ + + g+++rla+slgLh
    CCE27845.1 221 ASWLGTLFAVLAVASQYHESPYHVRT----RDSQKYIQISIHFLRLG--NFLL-RPSFDSIQALLLTSFVLLNDMKAEASWALTGLTCRLAQSLGLH 310
                   3344556***************9983....33334554444444444..4444.55599************************************** PP

  Fungal_trans 131 rnpsyvgkkslwklweeeaes.rrRlwwaaFylDktialklGrpp.l 175
                   r    ++  ++   +++++++ rrRlww++ + D++++l + r p +
    CCE27845.1 311 RATTPSEGRNGLPPDAKTKQMiRRRLWWTCVWHDTLTSLSFDRCPmT 357
                   *****99999666666666666*******************998843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5110.08
//
Query:       CCE27846.1  [L=565]
Description: probable extragenic suppressor of the bimD6 mutation [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-68  228.6   0.4    1.3e-67  227.1   0.0    1.9  2  RIO1          RIO1 family
  ------ inclusion threshold ------
      0.018   15.0   0.0          9    6.1   0.1    2.6  2  APH           Phosphotransferase enzyme family
       0.87    9.7  29.3       0.38   10.8  12.2    2.3  2  YL1           YL1 nuclear protein
        2.8    5.6  15.0        1.3    6.7   1.3    2.1  2  PI3K_1B_p101  Phosphoinositide 3-kinase gamma adapter protein


Domain annotation for each model (and alignments):
>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.1   0.0   2.8e-71   1.3e-67       2     185 ..     188     382 ..     187     385 .. 0.93
   2 ?   -2.8   1.1      0.91   4.1e+03      25      49 ..     523     547 ..     515     558 .. 0.51

  Alignments for each domain:
  == domain 1  score: 227.1 bits;  conditional E-value: 2.8e-71
                 EEEEEETTTE.....EEEEEEE-S---SS-HHHHCTTTSTTSTCG--GS-HHHHHHHHHHHHHHHHHHHHHTT--S--EEEEETTEEEEE--E.ETTEE CS
        RIO1   2 Vyhavsedgk.....evaiKiyktstteFkkrkkyvsgekrfkdrksktnprklvklwaekEfrnLkrleeagvpvPkpielkrhvlvmefig.edgva 94 
                 Vy +v  d+k     + aiK+ykt++++Fk+r++y++ge rfk  + k n+rk+vklwaekEfrnL+r+++ag+p+P+pi+lk hvlvm f+g ++g+a
  CCE27846.1 188 VYGGVLVDDKtgdaiQKAIKVYKTAILVFKDRERYITGEHRFKGGFDKGNNRKMVKLWAEKEFRNLRRIYNAGIPCPEPITLKLHVLVMGFLGdKKGWA 286
                 66666655555667799****************************************************************************99**** PP

                 GGBHHHCG.-....HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE--GTTEEETTSTTHHHHHHHHHHHHHHHHHTTC-----H CS
        RIO1  95 apklkdve.e....eeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedkvviIDvsQaveldhpnalefLerDveniikfFrrkgvekvde 185
                 +p+l+d+  +    e+++++ly ++l  mrk+y+ ++lvHaDLSeyN+l++++ ++iIDvsQ+ve+dhp++lefL++D++n+ +fFrrkgv++++ 
  CCE27846.1 287 YPRLRDAVlTgddvEQQWRSLYIQLLGVMRKMYQVCRLVHADLSEYNILYNRGLLYIIDVSQSVEPDHPRSLEFLRMDIKNVGDFFRRKGVDTLSD 382
                 ******986577788999*************************************************************************97765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.91
                 S-HHHHCTTTSTTSTCG--GS-HHH CS
        RIO1  25 Fkkrkkyvsgekrfkdrksktnprk 49 
                 F++ +++++ ++  k+ k ++ + k
  CCE27846.1 523 FEDKDEKKQHKQAVKEAKREKRKHK 547
                 4444444444444444433333333 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0021       9.4      38      84 ..     247     286 ..     242     307 .. 0.79
   2 ?    6.1   0.1     0.002         9     167     192 ..     323     345 ..     287     349 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH  38 rrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84 
                 ++e++ lr + +ag+p+Pe++        + l+++++ +++ +  + 
  CCE27846.1 247 EKEFRNLRRIYNAGIPCPEPIT-------LKLHVLVMGFLGDKKGWA 286
                 7899*****************9.......566677777777777766 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.002
                 EEE-SS-SGGGEEEC..TTEEEEE-- CS
         APH 167 vllHgDlhpgNllvdpddgrvtGviD 192
                 +l+H Dl+  N+l +   g + ++iD
  CCE27846.1 323 RLVHADLSEYNILYN--RGLL-YIID 345
                 79*************..7888.9**9 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   9.1    0.0069        31      17      73 ..      50     154 ..      42     166 .. 0.44
   2 ?   10.8  12.2   8.4e-05      0.38      47     108 ..     478     548 ..     404     565 .] 0.56

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0069
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................xxxxxxxxxxxxxxxxx RF
         YL1  17 qeeeedelellFaEeedDeefeseeeeeeee...................................................nsDsdfdsdeedeesde 64 
                 q+e++++l+++F+E++dD+  e++ + +  +                                                     Ds   sd+ d++   
  CCE27846.1  50 QNEDDEDLDDIFEEDDDDDVEEQDWSGDVRDltksvnrqrqlhntahggvalprsnqqkptantfasvddqvatlskhaakiRLDSVKQSDDKDKD--- 145
                 222244555555555555422222222222233345555555555555555555555555555555555555555555444444433333333322... PP

                 xxxxxxxxx RF
         YL1  65 eedeeegek 73 
                 ++d   +e+
  CCE27846.1 146 KADRATSEQ 154
                 222223333 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 8.4e-05
                 x........xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  47 e........nsDsdfdsdeedee...sdeeedeeegekelerqerkkrkkekkkrkaqkkkskkkkkkqkkkk 108
                           sDsd dsd+++     s ++ de++ ek   r ++ + k ekk+ k  ++++++k++k+k+k 
  CCE27846.1 478 TegedaqegASDSDSDSDSDNGAslsSGDSVDESRFEKGTPRGRKFEDKDEKKQHK--QAVKEAKREKRKHKM 548
                 03333344458888888886555777677777778888655555555544333333..222222221111111 PP

>> PI3K_1B_p101  Phosphoinositide 3-kinase gamma adapter protein p101 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.3   0.00028       1.3     319     429 ..      52     179 ..      34     207 .. 0.59
   2 ?    4.1   6.4    0.0018       8.2     325     419 ..     447     557 ..     409     563 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00028
  PI3K_1B_p101 319 edeed......vdeeedleeeeeeeeedsl.............arsstlstvsss.........skdsmlsllslsssslassvsslssgvds.dyv 386
                   ed+ed       d+++d+ee++ + +   l             a+                    k ++ +  s+  +  + s  +++   ds +  
    CCE27846.1  52 EDDEDlddifeEDDDDDVEEQDWSGDVRDLtksvnrqrqlhntAH---------GgvalprsnqQKPTANTFASVDDQVATLSKHAAKIRLDSvKQS 139
                   222221233345556666666655544333344433333322222.........1344444333666666667888888777888887777774444 PP

  PI3K_1B_p101 387 edsdessssspvaekkekkskkksksrlserlsrlfksksprv 429
                   +d d+++ +++   ++e+   ++++  l + + r f s+++ +
    CCE27846.1 140 DDKDKDKADRA---TSEQVLDQRTRMILLQMINRGFVSEVHGA 179
                   45555555554...55666667788888888888887776655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0018
  PI3K_1B_p101 325 deeedleeeeeeeeedsl......arsstlstvsssskdsmlsllslsssslassvsslssgvds.........dyvedsdesssssp.vaekkekk 405
                   + e+d+++ ++ + +d +       +  +  t  +++++ ++++ s s s   +s+ss  s  +s           +ed de++++++ v+e k++k
    CCE27846.1 447 NVEKDVQKLHHGQGNDLVyknllaDQVVQPKTEGEDAQEGASDSDSDSDSDNGASLSSGDSVDESrfekgtprgRKFEDKDEKKQHKQaVKEAKREK 543
                   44444444444433333322222222222233333355555555555555555566666666666666666666789999999988877999***** PP

  PI3K_1B_p101 406 skkksksrlserls 419
                    k+k  ++l+++++
    CCE27846.1 544 RKHKMPKHLKKKIV 557
                   *********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1447  (0.0807072); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 3733.71
//
Query:       CCE27847.1  [L=426]
Description: probable aspartic proteinase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-63  213.5   0.0    5.9e-63  213.2   0.0    1.1  1  Asp              Eukaryotic aspartyl protease
    1.1e-09   38.7   0.2    2.7e-05   24.5   0.0    3.0  3  TAXi_N           Xylanase inhibitor N-terminal
     0.0012   19.4   0.2       0.77   10.4   0.0    3.1  3  Asp_protease_2   Aspartyl protease
     0.0081   16.7   0.0        4.2    8.0   0.0    2.7  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease
  ------ inclusion threshold ------
      0.018   14.8   0.1        1.3    8.8   0.1    2.3  2  TAXi_C           Xylanase inhibitor C-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.2   0.0   1.7e-66   5.9e-63       1     314 [.     114     423 ..     114     424 .. 0.92

  Alignments for each domain:
  == domain 1  score: 213.2 bits;  conditional E-value: 1.7e-66
                 EEEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-E.EEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   1 eYfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstyk.kngkslsisYGdg.svsGflsqdtvkvggltvknqefgeatkep 97 
                 eY+  ++iG+p+q+  + +DTGS+d+WV s++++ ++  k +++y+p +Ss+ +   g++++i+YGdg s+sG+l+ dtv++gg  v ++ +++  + +
  CCE27847.1 114 EYAVMVQIGSPPQSIPMNLDTGSADFWVLSTDTD-QKMLKGQTLYRPASSSSSRrLVGEKWNIKYGDGsSASGILYLDTVQIGGTRVLKMGIESPYTVS 211
                 699******************************9.7899*******98777665489***************************************999 PP

                 SHHHTTSSSSEEEE-S-GGGSCGGSCCH...HHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS.TSSTEEEEEEEEETTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
         Asp  98 gstflaakfdGiLGlgfkeisveeatpv...fdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts.kgywqielesvtvggkt 192
                 +  + +  ++GiLGl+ ++ ++++ +p     d++   g +++p+ +  l     + g++ fG ++  +y+G+++y+pv++ +  w+i+  ++ +g+k+
  CCE27847.1 212 NDIANDKFVSGILGLANSAANTVRPVPQgtyLDHIH--GQLAQPILTANLR--RGAPGNYNFGFINRGEYTGNIQYTPVDQhHPLWKISASGYRIGSKQ 306
                 999999999*******99999999666654356655..559*******995..899*************************5567************** PP

                 EEEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEE.TTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESEEECCTSSSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 193 vlcssgcqailDtGTsllalptsivekiakaigakkse.segeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilglvseeegdlwi 290
                 +  + +++ai+DtGTsl  lp+ +v+++ ++i+++ ++ + g +v+ C+s  +lpd+ ++ig+ + ++p + + + + ++e   C+ g++++ + +  +
  CCE27847.1 307 S--QLKIDAIVDTGTSLALLPQRVVDELYSQIQGSFRHpKLGMMVFPCKS--KLPDFFLSIGSYNGRLPGEYINYAPIDHE--NCYGGIQTSAGLPFSV 399
                 *..99****************************9976515689999***7..**************************865..7*************** PP

                 EEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 291 LGdvFlrsayvvfdldnnrvglAe 314
                 LGdvFl+  +vvfd++ ++vg+A+
  CCE27847.1 400 LGDVFLKAQFVVFDYGHQTVGFAN 423
                 **********************97 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   7.6e-09   2.7e-05       1      54 [.     115     168 ..     115     172 .. 0.95
   2 !   10.6   0.0   0.00014       0.5      82     144 ..     174     232 ..     170     242 .. 0.74
   3 ?   -0.7   0.0      0.39   1.4e+03       9      34 ..     306     331 ..     300     356 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 7.6e-09
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykav 54 
                 Y v ++iG+ppq++ + +DtGs  +Wv  +  +++  + +++++p++ss+++++
  CCE27847.1 115 YAVMVQIGSPPQSIPMNLDTGSADFWVLSTDTDQKMLKGQTLYRPASSSSSRRL 168
                 8999*************************99999**************999875 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00014
      TAXi_N  82 eisygadgssssGvlatdtltlsstdgksvkvpnlvfGCgksnlgglaag..adGilGLGrgklS 144
                 +i+yg dgss+sG l  dt+++     ++++v ++ +   ++ ++++a++  ++GilGL++++  
  CCE27847.1 174 NIKYG-DGSSASGILYLDTVQI-----GGTRVLKMGIESPYTVSNDIANDkfVSGILGLANSAAN 232
                 789*7.****************.....445555555555555555555433499******98765 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.39
      TAXi_N   9 tppqplklvvDtGsdltWvqCkpcka 34 
                 + + ++ ++vDtG +l  +  +  ++
  CCE27847.1 306 QSQLKIDAIVDTGTSLALLPQRVVDE 331
                 445566799****9998776655555 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         5   1.8e+04      44      75 ..      29      61 ..      22      74 .. 0.59
   2 !    5.3   0.1    0.0088        31       8      87 ..     126     225 ..     117     227 .. 0.56
   3 !   10.4   0.0   0.00022      0.77       8      36 ..     309     337 ..     301     348 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5
  Asp_protease_2 44 vsgagge.vkarlvrldslklggltlknvpalv 75
                    ++g+  + + +++++l ++k  g+t ++ p+++
      CCE27847.1 29 SQGSQLSeSGGKEFTLTQVKNEGFTGRDGPMAF 61
                    455554423345566666666666655555554 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0088
  Asp_protease_2   8 kpvrfllDTGas.ttlispelaekl...........glkvreseltvrv......sgaggevkarlvrldslklggltlknv....palvld... 77 
                     + + + lDTG+    ++s+++ +k+                 s+ +++v      +  +g++ + +  ld++++gg ++  +    p +v +   
      CCE27847.1 126 QSIPMNLDTGSAdFWVLSTDTDQKMlkgqtlyrpasS-----SSSRRLVgekwniKYGDGSSASGILYLDTVQIGGTRVLKMgiesPYTVSNdia 215
                     5667888999873568888888777675544322220.....22111111212124478888888999999999997765554444344444455 PP

  Asp_protease_2  78 lgeeidglLG 87 
                     +++++ g+LG
      CCE27847.1 216 NDKFVSGILG 225
                     5556667777 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00022
  Asp_protease_2   8 kpvrfllDTGasttlispelaeklglkvr 36 
                      ++++++DTG s  l++++++++l  + +
      CCE27847.1 309 LKIDAIVDTGTSLALLPQRVVDELYSQIQ 337
                     4899******************9966554 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0054        19       9      71 ..     127     202 ..     117     227 .. 0.63
   2 !    8.0   0.0    0.0012       4.2       9      34 ..     310     335 ..     305     344 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0054
                      EEEEEEETT.-SS-EEEHHHHHHTTGGGGEB..TT--.............EE-TTSTT-EEEEEEEEEE.EETTEEE CS
  gag-asp_proteas   9 pvkflvDTG.Asstiiseelaerlglsrkedkgkvev.............ktangeveakrvrldsvkiggielrnv 71 
                      ++ + +DTG A+  ++s+++ +++ l+ ++  ++++              k ++g+   +  +ld+v+igg ++ ++
       CCE27847.1 127 SIPMNLDTGsADFWVLSTDTDQKM-LKGQTLYRPASSsssrrlvgekwniKYGDGSSASGILYLDTVQIGGTRVLKM 202
                      466889999555556666555555.55444444443344455556666547788888888999******99988665 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0012
                      EEEEEEETT-SS-EEEHHHHHHTTGG CS
  gag-asp_proteas   9 pvkflvDTGAsstiiseelaerlgls 34 
                      +++++vDTG s  +++++++++l  +
       CCE27847.1 310 KIDAIVDTGTSLALLPQRVVDELYSQ 335
                      789*****************998655 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.014        49       8      64 ..     294     344 ..     289     359 .. 0.79
   2 ?    8.8   0.1   0.00035       1.3     125     160 ..     388     422 ..     369     423 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.014
                 EEEETTEEE-------EE-S----SEEE-SSSSSEEE-HHHHHHHHHHHHHTS-GG. CS
      TAXi_C   8 gisvngkrlplpasaldldktgsggtvlstgtpytvletdvYralvkafakelaaek 64 
                 +is +g r+  ++s l      +  ++++tgt+++ l++ v ++l ++++ +++++k
  CCE27847.1 294 KISASGYRIGSKQSQL------KIDAIVDTGTSLALLPQRVVDELYSQIQGSFRHPK 344
                 6677777777777776......7899*************999999998888887765 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00035
                 EEE--S--SSSEEE-HHHHBTS-EEEETTTTEEEEE CS
      TAXi_C 125 fvesgvagesavviGglqlednllvFDleksrlgFs 160
                  +++ +ag + +v+G + l+   +vFD   +++gF+
  CCE27847.1 388 GIQT-SAGLPFSVLGDVFLKAQFVVFDYGHQTVGFA 422
                 5555.6777889***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2874.88
//
Query:       CCE27848.1  [L=340]
Description: uncharacterized protein CPUR_01322 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2518.69
//
Query:       CCE27849.1  [L=576]
Description: uncharacterized protein CPUR_01323 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-22   77.8   0.0    2.2e-21   75.9   0.0    2.0  1  Abhydrolase_4  TAP-like protein
    1.2e-16   61.1   0.0    3.9e-14   52.9   0.0    3.2  2  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   2.5e-25   2.2e-21       2     101 ..     427     547 ..     426     550 .. 0.84

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 2.5e-25
  Abhydrolase_4   2 pvfgaalaesllsCagw....................pvspqrprdestakg....aapvLllqnerDpaTPyegakklakalggavlvtvegeGH 73 
                    +vfga++++ ++sCa w                    p++ + +++     +    a+p L+l+n+ Dp+TP++ a+++a++ +ga lv++e  GH
     CCE27849.1 427 SVFGAYWSQVRFSCARWpferanrifrgpfttpsppsPAAAATAPPP----SamgaATPLLFLSNRLDPVTPLSAARAMARRHPGAGLVVQEALGH 518
                    579***********************998877555442222222222....144446*************************************** PP

  Abhydrolase_4  74 gala.agntCvdkavdaYLltGelpaddt 101
                    +a+a a+++C ++ v++Y+ltG++p ++ 
     CCE27849.1 519 CAIAaAYSSCTRDIVAEYFLTGRVPGEGE 547
                    *************************9775 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   4.3e-18   3.9e-14       1     110 [.      85     284 ..      85     316 .. 0.85
   2 !    2.8   0.0    0.0086        77     208     251 ..     474     519 ..     407     522 .. 0.75

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.3e-18
                    SEEEEE-STTTCGGGGTTGHHHHHHHHT.......TSEEEEEEETTSTTSSSTTTGB.......CHH............................. CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakd.......gfdvillDlrGvgySspapacin......ddy............................. 54 
                    ++++ ++G+pg+s+v   +g +++L+k        +++++ +D+rGvg+S+p+ +c +      d                               
     CCE27849.1  85 GPVITNPGGPGGSGVDLVLGSGRYLQKYidtpgkkHHEIVSFDPRGVGRSRPRANCFPdtalarD-Amileergpgslsdgarklayglammdgfa 179
                    699************99999999999999999************************887666652.05777777888888899999999999999* PP

                    .............................................SHHHHHHHHH...HHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEE CS
  Abhydrolase_1  55 .............................................gtasvaddld...rildalgddkltlvGhSmGGmialayaaeyperVkalv 102
                                                                 + ++  + l+   r +   ++ kl ++G+S+G+ ++ ++a+++perV ++v
     CCE27849.1 180 krcaavedrhqeageeifsymgtpsvardmiemvdkmdelrkkqsNRDDGDERLKlkkRGRREGNVVKLQYLGFSCGTVLGNYVASLFPERVGRVV 275
                    *****************************************9998334445555554444************************************ PP

                    EESE.CSSC CS
  Abhydrolase_1 103 llga.idpa 110
                    l+g  +++ 
     CCE27849.1 276 LDGVcNADD 284
                    ***973333 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0086
                    HHHHS..EEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSS CS
  Abhydrolase_1 208 knvla..ptlvisgtsDplvppkaledlaqllpkkrlvvisdagHl 251
                    +++ a  p l++s + Dp++p +a + +a+  p++ lvv +  gH+
     CCE27849.1 474 SAMGAatPLLFLSNRLDPVTPLSAARAMARRHPGAGLVVQEALGHC 519
                    4455556999999999999999999999998888666665555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4163.96
//
Query:       CCE27850.1  [L=123]
Description: uncharacterized protein CPUR_01324 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-10   40.9   0.0      2e-10   40.7   0.0    1.1  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   1.1e-14     2e-10      72     146 ..      47     118 ..      21     122 .. 0.92

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.1e-14
       RVT_2  72 eeelvvhqldvdsafLnaeldeevyvkqPpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferse 146
                 +++l + q dv  a + a +d +vy++ P G+      + ++kL+k+lyGl+ + llW+++ ++ Lk  gf+  +
  CCE27850.1  47 KYNLELKQYDVTNALVPASMDRDVYMRMPKGYRKK---GTIVKLQKALYGLRISFLLWQKEFTTNLKASGFQTVD 118
                 5788899*************************877...99*******************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 925.91
//
Query:       CCE27851.1  [L=646]
Description: uncharacterized protein CPUR_01325 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-21   75.9   0.0    7.3e-21   74.2   0.0    1.9  1  Abhydrolase_4  TAP-like protein
    6.6e-17   62.0   0.0    1.9e-14   54.0   0.0    3.2  2  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.0   8.1e-25   7.3e-21       2     101 ..     469     597 ..     468     600 .. 0.85

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 8.1e-25
  Abhydrolase_4   2 pvfgaalaesllsCagw...................pvspqrprdestakg.........aapvLllqnerDpaTPyegakklakalggavlvtve 69 
                    +vfga++++ ++sCa w                   p++p +p+  +  +          aap L+l+n+ Dp+TP++ a+++a++ +ga lv++e
     CCE27851.1 469 SVFGAYWSQIRFSCARWpfranwifrgpfttpsppsPAPPPPPPAAAASAAsalrtsvgaAAPLLFLSNRLDPVTPLSAARAMARRHPGAGLVVQE 564
                    78*******************************9774433333333332113555667757*********************************** PP

  Abhydrolase_4  70 geGHgala.agntCvdkavdaYLltGelpaddt 101
                      GH+a+a a+++C ++ v++Y+ltG++p ++ 
     CCE27851.1 565 ALGHCAIAaAYSSCTRDIVAEYFLTGRVPGEGE 597
                    *****************************9775 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   2.1e-18   1.9e-14       1     107 [.      85     281 ..      85     316 .. 0.87
   2 !    2.8   0.0    0.0085        77     209     251 ..     525     569 ..     450     572 .. 0.79

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 2.1e-18
                    SEEEEE-STTTCGGGGTTGHHHHHHHHT.......TSEEEEEEETTSTTSSSTTTGB.......CHH............................. CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakd.......gfdvillDlrGvgySspapacin......ddy............................. 54 
                    ++++ ++G+pg+s+v   +g +++L+k        +++++ +D+rGvg+S+p+ +c +      d                               
     CCE27851.1  85 GPVITNPGGPGGSGVDLVLGSGRYLQKYidtpgkkHHEIVSFDPRGVGRSRPRANCFPdtalarD-Amilearglgslshdagklayglammdgfa 179
                    699************99999999999999999************************887666552.05777777888888889999999999999* PP

                    .............................................SHHHHHHHHH...HHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEE CS
  Abhydrolase_1  55 .............................................gtasvaddld...rildalgddkltlvGhSmGGmialayaaeyperVkalv 102
                                                                 + ++  + l+   r +   ++ kl ++G+S+G+ ++ ++a+++perV ++v
     CCE27851.1 180 krcaavedrhqeageeifsymgtpsvardmiemvdkmdelrkkqsNRDDGDERLElkkRGRREGNVVKLQYLGFSYGTVLGNYVASLFPERVGRVV 275
                    *****************************************9999444455555554455************************************ PP

                    EESE.C CS
  Abhydrolase_1 103 llga.i 107
                    l+g  +
     CCE27851.1 276 LDGVcN 281
                    ***953 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0085
                    HHHS..EEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSS CS
  Abhydrolase_1 209 nvla..ptlvisgtsDplvppkaledlaqllpkkrlvvisdagHl 251
                     v a  p l++s + Dp++p +a + +a+  p++ lvv +  gH+
     CCE27851.1 525 SVGAaaPLLFLSNRLDPVTPLSAARAMARRHPGAGLVVQEALGHC 569
                    444466**********************99998666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4689.94
//
Query:       CCE27852.1  [L=496]
Description: related to protein involved in authophagy (APG17) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.5e-126  420.4   9.3   8.5e-126  420.2   9.3    1.0  1  APG17            Autophagy protein Apg17
     0.0079   16.0   0.5      0.066   13.0   0.2    2.3  2  Phage_GP20       Phage minor structural protein GP20
  ------ inclusion threshold ------
      0.077   12.7   0.1        2.9    7.6   0.0    2.7  2  Retrotran_gag_2  gag-polypeptide of LTR copia-type
      0.081   12.7   0.8        0.9    9.3   0.0    2.5  2  Bacillus_HBL     Bacillus haemolytic enterotoxin (HBL)
       0.25   11.3   9.4        8.1    6.3   8.6    2.8  1  CHAD             CHAD domain
       0.32   11.5   2.1        1.8    9.1   0.1    3.1  4  NPV_P10          Nucleopolyhedrovirus P10 protein
       0.71   10.4   5.3       0.88   10.1   0.3    3.2  3  FlgN             FlgN protein
        1.3    9.4   0.0        1.3    9.4   0.0    2.5  4  TPR_8            Tetratricopeptide repeat
        4.8    7.1   7.7       0.29   11.0   0.8    2.6  3  betaPIX_CC       betaPIX coiled coil


Domain annotation for each model (and alignments):
>> APG17  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  420.2   9.3  4.3e-129  8.5e-126       1     394 [.      34     456 ..      34     458 .. 0.98

  Alignments for each domain:
  == domain 1  score: 420.2 bits;  conditional E-value: 4.3e-129
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHIIIIIIIIIIIIIIIIIHHHHHHHHHHHHHHHHHHHHHTSS- CS
       APG17   1 ehllaAkksLseaqtlcqrAnelltsarqeleeavkllakteflrdglkqQlkllekirkslerklekgkeefkdlikeldaanerLektlekLrktkv 99 
                 +hll Ak+sLs +++++ rAnel+tsar +++ea  l a+t+f+r+++ +Q+++l+++r sl+ ++e+gk++fk+l+k++d+++ +L+ t+++Lr+t+v
  CCE27852.1  34 NHLLVAKRSLS-SMNHVLRANELATSARLSHQEALLLGAQTAFVRNSMLDQVTILTRVRGSLQCTYEWGKRDFKKLVKAMDEVDTELTGTMDMLRDTQV 131
                 69*********.*************************************************************************************** PP

                 TTS........STGGGCS--TTTTHHHHHHHHHHHHHHHHHHHHHTTHH..HHHHHHHHHHH......-------STCCHHHHHHHHHHHHHHHHHHHH CS
       APG17 100 epsfrpegee.ktLlDFvdedsveelkealkesidelqaaqkkldssllefdtdlrelkkel......sksksksessslipellkelesleeemAslL 191
                 +++++p++++  tLlDFvde+sv++++ea+k si++lq +q ++d++ll+f+td+r+l+k+l      +    ++++++ + +ll ++e+++  mAslL
  CCE27852.1 132 QSTLQPSDRKgLTLLDFVDETSVHDMREAMKRSIQDLQGIQVSFDGDLLRFETDIRNLRKTLsaaplpA---MDEDTQPATASLLLQMEDHSATMASLL 227
                 ********87****************************************************7764431...3459*********************** PP

                 HHHHHHHHHHHHH.............................................S-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       APG17 192 esLtnHfDqcvkAvkltegggal.rraaae............................lseeereelleVlekDaaeledVvkelqerleemekakkll 261
                  sLt HfD+cv+A+++teg++al rr+ ae                             ++++++e+l+V+ +Da+e++dVv e+q++l++me+++  +
  CCE27852.1 228 ASLTTHFDMCVTAIRTTEGAAALaRRRVAEgtqsqgseevsisgviaeqeshmsdlepKTADDQAEMLKVVVQDAKEVDDVVFEIQDHLANMEQEYTVV 326
                 ***********************9999999***************************999*************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       APG17 262 sekkeeiekllsalkkaleeleevgkklpeylaifkaeeeflerweeekekieekleeleeLrefYegFlsaYdklllEveRRraveekmekilkkare 360
                 +++ + ++++++++ + +++l e+g++l +yla   aee+f +rwe eke +  klee++e+r+fYeg++sa  +l+lEveRRrav+e++++i++ka+e
  CCE27852.1 327 QKHLSGTKASYTSILESFTMLGEIGDRLGDYLA---AEEDFKQRWELEKEAVFGKLEEMREMRKFYEGYASAHGSLVLEVERRRAVDERVQSIWRKAQE 422
                 *********************************...*************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHSSSSSBGGGSTTGCC CS
       APG17 361 kLeklqeedrerReeFlaevGefLPedlwpgldd 394
                  ++k+ e+dr+ Re+F+++vGe+LP+dlw+g++ 
  CCE27852.1 423 SVDKILEADRASRETFRQDVGEYLPTDLWAGIQG 456
                 ******************************9985 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.33   6.6e+02      98     130 ..     160     192 ..     150     198 .. 0.83
   2 !   13.0   0.2   3.3e-05     0.066      30     102 ..     269     343 ..     257     348 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.33
  Phage_GP20  98 kavkalldkdklklkedgelkgLdeqikkLkes 130
                 ++ +++ d++ ++++ dg+l  +++ i +L+++
  CCE27852.1 160 AMKRSIQDLQGIQVSFDGDLLRFETDIRNLRKT 192
                 555667789999999999999999999999985 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3.3e-05
  Phage_GP20  30 lkeqlkdrdkqLedLk.kkakdneeLqkqieelqaknkkakaeyeakiadlkldna.ielaLkeakaknekavka 102
                 + + ++++++ ++dL+ k a d +e+ k + +  +++++   e +  +a+++ +++ +++ L+++ka++++++ +
  CCE27852.1 269 ISGVIAEQESHMSDLEpKTADDQAEMLKVVVQDAKEVDDVVFEIQDHLANMEQEYTvVQKHLSGTKASYTSILES 343
                 55678999999****94456789999999999999******************99736999********999875 PP

>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.084   1.7e+02      54      91 ..     141     178 ..     132     182 .. 0.88
   2 ?    7.6   0.0    0.0014       2.9      92     115 ..     221     244 ..     213     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.084
  Retrotran_gag_2  54 kklfslkmkegesvadhinkleelvneLsalgvkidde 91 
                      k l+ l + +++sv+d+ + ++  +++L+ + v +d +
       CCE27852.1 141 KGLTLLDFVDETSVHDMREAMKRSIQDLQGIQVSFDGD 178
                      56788888999*******************99988765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0014
  Retrotran_gag_2  92 dkvvllLasLPesyetfvtaiess 115
                        ++ lLasL++ +++ vtai++ 
       CCE27852.1 221 ATMASLLASLTTHFDMCVTAIRTT 244
                      57899****************984 PP

>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00045       0.9     112     155 ..     152     195 ..     128     203 .. 0.83
   2 ?    1.0   0.1      0.17   3.3e+02     110     148 ..     294     332 ..     282     350 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00045
  Bacillus_HBL 112 eeiqqnqkevkqlikeLkklklklakdsknFktdvdeltsilag 155
                   +++    +++k++i++L+  +++++ d   F+td+ +l ++l++
    CCE27852.1 152 TSVHDMREAMKRSIQDLQGIQVSFDGDLLRFETDIRNLRKTLSA 195
                   44888999********************************9976 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.17
  Bacillus_HBL 110 LqeeiqqnqkevkqlikeLkklklklakdsknFktdvde 148
                   + + ++q  kev++++ e+++   +++++ +  +++++ 
    CCE27852.1 294 MLKVVVQDAKEVDDVVFEIQDHLANMEQEYTVVQKHLSG 332
                   555678889999999999999999999987766665533 PP

>> CHAD  CHAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.6    0.0041       8.1      21     164 ..     150     427 ..     132     488 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0041
                 -THHHHHHHHHHHHHHHHHHHTTTSS-HHHHHHHHHHHHHHHHHHHHH....HHHHHHHHTHHHHH................................. CS
        CHAD  21 dpeavHqmRvalRRlRsalrlfapvldkeeaaalekelrwlaraLGea....RDldVllerllsrle................................ 83 
                 d  +vH+mR a++R    l+  +  + + +  + e+ +r+l ++L++a     D d      +++ +                                
  CCE27852.1 150 DETSVHDMREAMKRSIQDLQGIQVSF-DGDLLRFETDIRNLRKTLSAAplpaMDEDT-----QPATAslllqmedhsatmasllasltthfdmcvtair 242
                 6689******************9999.799****************99555533333.....3333333333446666777777777777777777777 PP

                 ........................................................HTS-TTTCGGGHHHHHHHHHHHH................HHHH CS
        CHAD  84 ........................................................erlpaaeqealerllkrlekerk................rara 110
                                                                                           +++++                +++ 
  CCE27852.1 243 ttegaaalarrrvaegtqsqgseevsisgviaeqeshmsdlepktaddqaemlkvvV-----------------QDAKEvddvvfeiqdhlanmeQEYT 324
                 777777777777777777776666666666666666665333222222222222220.................2222233444444444444443333 PP

                 HHHHHHTSHH..HHHHHHHHHHHHT--S--....................................................TSBHHHHHHHHHHHHHH CS
        CHAD 111 rvlaaLdsar..yqalldaldallaaerle....................................................aepaaaalekrlrkayr 155
                  v++ L   +  y+++l++++ l      e                                                    + + ++a+++r++  +r
  CCE27852.1 325 VVQKHLSGTKasYTSILESFTMLG-----EigdrlgdylaaeedfkqrwelekeavfgkleemremrkfyegyasahgslvlEVERRRAVDERVQSIWR 418
                 333333322222333333333332.....0222223333333334566677777777777777788888888888888888888888888888888888 PP

                 HH.HHHH-- CS
        CHAD 156 klekraaka 164
                 k+++  +k+
  CCE27852.1 419 KAQESVDKI 427
                 886666666 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.3   2.6e+03      47      66 ..     108     127 ..      85     138 .. 0.65
   2 ?   -1.5   0.0       1.8   3.5e+03      50      72 ..     178     200 ..     151     207 .. 0.62
   3 ?    9.1   0.1   0.00088       1.8       5      53 ..     294     339 ..     292     356 .. 0.79
   4 ?   -3.3   0.0       6.9   1.4e+04      15      24 ..     408     417 ..     407     432 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.3
     NPV_P10  47 qsaqLaeletkvenIqdiLn 66 
                 + ++++e++t+++   d+L 
  CCE27852.1 108 LVKAMDEVDTELTGTMDMLR 127
                 44445555555555555554 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
     NPV_P10  50 qLaeletkvenIqdiLnpdevPd 72 
                  L  +et + n  ++L++ ++P 
  CCE27852.1 178 DLLRFETDIRNLRKTLSAAPLPA 200
                 45566778888888888666765 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00088
     NPV_P10   5 iLlvIradikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLae 53 
                  L v+ +d k+vdd V  +q+++++++++   v+   ++L +  a+ ++
  CCE27852.1 294 MLKVVVQDAKEVDDVVFEIQDHLANMEQEYTVVQ---KHLSGTKASYTS 339
                 688999********************99877654...666666666555 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 6.9
     NPV_P10  15 avddkVdalq 24 
                 avd++V+++ 
  CCE27852.1 408 AVDERVQSIW 417
                 5666665552 PP

>> FlgN  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.4   4.8e+03      49     104 ..     107     169 ..     104     173 .. 0.54
   2 ?   10.1   0.3   0.00044      0.88       9      72 ..     271     342 ..     264     385 .. 0.76
   3 ?    0.6   0.1      0.36   7.1e+02      80     109 ..     403     433 ..     371     442 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHHHHHHHHTT--.......SCHHHHHHHHCT.......TCCHHHHHHHHHHHHHHHHHH CS
        FlgN  49 ellekleqleqkrakllaelgls.......aeeatlsellak.......eedeelkelwqelkelleelk 104
                 +l++++++ + ++  +++ l  +       +         +k        +++++ +++++ k  +++l+
  CCE27852.1 107 KLVKAMDEVDTELTGTMDMLRDTqvqstlqP-------SDRKgltlldfVDETSVHDMREAMKRSIQDLQ 169
                 5667777777777777776666633333331.......22222222333566666666666666666655 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00044
                 HHHHHHHHHHHHHH.HHHHHHHHHHHTT..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--.....S CS
        FlgN   9 elleeelelleeLl.elleeEteaLkag..dieaLeelleekqellekleqleqkrakllaelgls.....a 72 
                 + ++e+  +++ L+ ++ + ++e+Lk    d+++ ++++ e+q+ l+++eq+    +k+l+  + s     +
  CCE27852.1 271 GVIAEQESHMSDLEpKTADDQAEMLKVVvqDAKEVDDVVFEIQDHLANMEQEYTVVQKHLSGTKASytsilE 342
                 567788888888883456677778877799******************************999988544441 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.36
                 HHCT.TCCHHHHHHHHHHHHHHHHHHHHHHH CS
        FlgN  80 llak.eedeelkelwqelkelleelkelnel 109
                 + ++ + de+++++w++ +e ++++ e+ ++
  CCE27852.1 403 VERRrAVDERVQSIWRKAQESVDKILEADRA 433
                 3333567888888888888888887666655 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.8   9.5e+03       8      26 ..     210     228 ..     210     231 .. 0.76
   2 ?    9.4   0.0   0.00065       1.3       2      26 ..     342     366 ..     341     367 .. 0.93
   3 ?   -3.3   0.1       7.8   1.5e+04      13      25 ..     378     390 ..     376     392 .. 0.78
   4 ?   -3.7   0.1         9   1.8e+04      19      32 ..     419     432 ..     419     433 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.8
                 HHHHHHTT-HHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyek 26 
                 +s++l+++d+ + ++++  
  CCE27852.1 210 ASLLLQMEDHSATMASLLA 228
                 6899999999887777765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00065
                 CHHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyek 26 
                 e+  +lg i + lgdy +A+e +++
  CCE27852.1 342 ESFTMLGEIGDRLGDYLAAEEDFKQ 366
                 6889******************996 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 7.8
                 HTT-HHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyye 25 
                 kl+++ e+ ++ye
  CCE27852.1 378 KLEEMREMRKFYE 390
                 6778888888887 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 9
                 HHHHHHHHHHHHHH CS
       TPR_8  19 eAkeyyekaleldp 32 
                 +A+e+  k le+d+
  CCE27852.1 419 KAQESVDKILEADR 432
                 68999999999987 PP

>> betaPIX_CC  betaPIX coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.6   3.1e+03      48      60 ..     102     114 ..      64     133 .. 0.66
   2 ?   11.0   0.8   0.00015      0.29      25      59 ..     296     331 ..     279     342 .. 0.80
   3 ?   -3.5   0.3       4.8   9.5e+03      49      61 ..     419     431 ..     401     439 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.6
  betaPIX_CC  48 kqenkklkkslee 60 
                 k+++kkl k+++e
  CCE27852.1 102 KRDFKKLVKAMDE 114
                 4455555555544 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00015
  betaPIX_CC  25 qtvle.ekslVDtVYaLkdevqelkqenkklkksle 59 
                 ++v++  k + D+V+ ++d++++++qe+  ++k l 
  CCE27852.1 296 KVVVQdAKEVDDVVFEIQDHLANMEQEYTVVQKHLS 331
                 455541588889****************99999886 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 4.8
  betaPIX_CC  49 qenkklkksleeE 61 
                 + + ++ k le +
  CCE27852.1 419 KAQESVDKILEAD 431
                 2333445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1033  (0.0576162); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3349.20
//
Query:       CCE27853.1  [L=286]
Description: uncharacterized protein CPUR_01327 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        0.2   12.4   0.0        0.2   12.4   0.0    2.9  4  Adeno_E1B_55K_N  Adenovirus E1B protein N-terminus


Domain annotation for each model (and alignments):
>> Adeno_E1B_55K_N  Adenovirus E1B protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.1e-05       0.2      12      38 ..      15      41 ..      14      70 .. 0.83
   2 ?   -3.2   0.2      0.84   1.5e+04      55      67 ..     127     139 ..     123     142 .. 0.68
   3 ?   -1.3   0.0      0.21   3.7e+03      12      29 ..     156     172 ..     150     190 .. 0.64
   4 ?   -1.3   0.2       0.2   3.6e+03      45      62 ..     221     238 ..     215     244 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.1e-05
  Adeno_E1B_55K_N 12 haGlhshapVEgmeeaaeeenLrLLas 38
                     ++Gl s a VE+++   +ee LrL ++
       CCE27853.1 15 RSGLPSVAHVENGQTGNDEERLRLASG 41
                     68*********************9876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.84
  Adeno_E1B_55K_N  55 aaegGgagaaaGg 67 
                      +ae Gg+++  G 
       CCE27853.1 127 EAETGGQDGDDGN 139
                      4678888877775 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.21
  Adeno_E1B_55K_N  12 haGlhshapVEgmeeaae 29 
                      + G  s+++ E++ ++ e
       CCE27853.1 156 QGGHLSSGFAENG-GSEE 172
                      5566677777777.4444 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.2
  Adeno_E1B_55K_N  45 sdgesssdqaaaegGgag 62 
                      s+ +s s  a+a++G + 
       CCE27853.1 221 SSASSKSIIANANSGTRA 238
                      344445555666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 2092.08
//
Query:       CCE27854.1  [L=416]
Description: probable high-affinity nickel transport protein nic1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-59  201.8  10.4    1.9e-59  201.3  10.4    1.2  1  NicO      High-affinity nickel-transport protein
  ------ inclusion threshold ------
        5.8    6.8  15.7      0.035   14.0   2.9    3.0  3  DUF2062   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> NicO  High-affinity nickel-transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3  10.4   2.1e-63   1.9e-59       5     282 ..      55     360 ..      51     361 .. 0.94

  Alignments for each domain:
  == domain 1  score: 201.3 bits;  conditional E-value: 2.1e-63
        NicO   5 iglsflyGvrHAvdagHgkai...irklmqagktalkrGillslgsslvvvlvavllvvaavlvlr.ltslsetgaaigtei.asFllvilllnllllr 98 
                 ++l++ +G+rHA+da+H+ ai   +r l++ g+++ ++G+++slg+s++v++++v+++ ++ ++++  + ++  g++igt+i a+ ll+++l+n+ +l+
  CCE27854.1  55 AALAYSLGLRHALDADHISAIdlmTRRLVSLGQRPSTVGTFFSLGHSTIVIVTCVVVAATSGALRErFDGFTRVGNIIGTSIsAAVLLILCLANIYILV 153
                 78********************************************************999999888******************************** PP

        NicO  99 klrklfrklerlgrapaaeleaalakr.......................gllsrilgklfrlitkswhmypvgflfglGfdtateiallaidpsealk 174
                 +l+k  r+        +a+le  ++++                       g++ r l+ lf+ ++++w myp+g+ fglGfdt +eia+l+i++ +al+
  CCE27854.1 154 SLIKNLRSE-----LARAHLESSHHGHattstdqcslqedssppagttggGIMMRLLHFLFKSVDRPWKMYPLGVVFGLGFDTSSEIAILGISSLQALQ 247
                 *99986443.....3345666666666667889****************************************************************** PP

        NicO 175 gdsfdsilalpalfavGlrlcdgadivlmfaaln.waflg..grklvyamsitgtsitvalliglivtlklvakkfalsgslwaaiisle..leivGav 268
                 g s++ il++p+lf+  ++l+d++d++ m+a++  +af+   +++l+y + + ++ ++v+++ig+i +l lv++  + +g +w+ ++++   ++i+G  
  CCE27854.1 248 GTSLWLILIFPVLFTSAMCLLDTLDGASMLALYTsQAFSRdpIALLYYQIILSAITVLVSAFIGIIQLLSLVQNVADPQGPVWDGVSAIGdhFDIIGGS 346
                 *******************************9963799999***********************************************9999******* PP

        NicO 269 lvllfallllgasl 282
                 + +lf l+ + ++l
  CCE27854.1 347 ICGLFLLVGVLSML 360
                 *****998777775 PP

>> DUF2062  Uncharacterized protein conserved in bacteria (DUF2062)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   2.9   3.9e-06     0.035      27     130 ..       9     110 ..       8     122 .. 0.63
   2 ?   -1.4   0.2      0.21   1.9e+03     118     144 ..     132     158 ..     128     162 .. 0.66
   3 ?    0.8   0.9     0.045     4e+02     117     146 ..     342     372 ..     245     374 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.9e-06
     DUF2062  27 iGvfigflPifglqmllaallalllr..vnlpaavagtwisnPltlppiyylayklGalllgeeaeal.....slseleelglewlleslleiglplll 118
                 +G+f  + P+++ q +++++l l ++  v ++aa+++ +   P+ + p  +lay lG      +a+++     +        l +l ++ +++g+ + l
  CCE27854.1   9 LGFFSRLSPTLPPQSIAIVALLLSVNllVWVVAAIILRFH--PVLVSP-AALAYSLGLRH-ALDADHIsaidlM-----TRRLVSLGQRPSTVGTFFSL 98 
                 7*********999998777666666533444555555555..999999.559*****665.3344444334432.....22224556677777777777 PP

     DUF2062 119 Gslilglilall 130
                 G   + +++ ++
  CCE27854.1  99 GHSTIVIVTCVV 110
                 765555554444 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.21
     DUF2062 118 lGslilglilallgYflvlllwrlyrr 144
                 +G  i +++l +l+   +++l++l ++
  CCE27854.1 132 IGTSISAAVLLILCLANIYILVSLIKN 158
                 677777777777777666666666555 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.045
     DUF2062 117 llGslilglilal.lgYflvlllwrlyrrrr 146
                 ++G+ i+gl+l + ++ +l+++ wr++  rr
  CCE27854.1 342 IIGGSICGLFLLVgVLSMLLYRPWRRRMDRR 372
                 5788888876544255566666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2904.86
//
Query:       CCE27855.1  [L=173]
Description: uncharacterized protein CPUR_01329 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-13   48.8   2.0    1.4e-12   47.8   1.8    1.7  1  4HBT      Thioesterase superfamily
     0.0092   16.3   0.0       0.01   16.1   0.0    1.2  1  4HBT_3    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   1.8   1.6e-16   1.4e-12       2      76 ..      72     146 ..      71     149 .. 0.95

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.6e-16
                 SSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSC CS
        4HBT   2 GvvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgr 76 
                 G +hg+v ++++D + g+a+ s+ +r++  + v++++ fl++++++d+++v+a+ +r+g++ a+v++++ + +g+
  CCE27855.1  72 GALHGAVSATIVDYVTGLAICSHDLRESTGASVDMHLSFLAAAQVDDVVVVRATAERVGGNLAFVTIRINKVGGE 146
                 88******************************************************************9877766 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.1e-06      0.01     161     232 ..      73     141 ..       5     163 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-06
                 SSHHHHHHHHTT-...-GGGGTSS-......SB--EEEEEEEE-S--S-...EEEEEE-SEEETTEEEEEEEEE CS
      4HBT_3 161 pahlaaLaylsDs.f.pvprvhglrldaeasgwmpsldltiyfhrepaedeWllleaetpwagdgrglvearlw 232
                 ++h a  a ++D+    +   h+lr++     + +s+d+ + f ++ ++d+ ++++a+++++g++ ++v+ r+ 
  CCE27855.1  73 ALHGAVSATIVDYvTgLAICSHDLRES-----TGASVDMHLSFLAAAQVDDVVVVRATAERVGGNLAFVTIRIN 141
                 566666677777743544555555543.....345888888888754347788888888888888877777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1223.42
//
Query:       CCE27856.1  [L=371]
Description: related to malate dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     4e-124  414.1   0.5   4.6e-124  413.9   0.5    1.0  1  Ldh_2     Malate/L-lactate dehydrogenase


Domain annotation for each model (and alignments):
>> Ldh_2  Malate/L-lactate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.9   0.5  2.5e-128  4.6e-124       3     332 ..      17     345 ..      15     346 .. 0.98

  Alignments for each domain:
  == domain 1  score: 413.9 bits;  conditional E-value: 2.5e-128
                 HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTT-GGGTGGGHHHHHHHHHTTSSBSS---EEEEEETTEEEEEETTE-HHHHHHHHHHHHHHHHHH CS
       Ldh_2   3 aeelralveavleaagvseedAeivadvlveadlrGvdsHGvarlpryverlkkgkinpkaepevvketpavavvDgdnglGqvvakkamelaiekake 101
                  +e+++lv ++l a gv++++A+iva++l++adlrGvd+HG+ r+p+yver+++g ++p a+p++++ tp+va+vDg+ng+G+++a+ am++ai+ a+ 
  CCE27856.1  17 PSEAHRLVVDILSANGVPADNADIVAKCLIAADLRGVDTHGILRIPSYVERIRQGVLDPAARPQLTHVTPVVAQVDGRNGFGFLAAHLAMDAAINAAQL 115
                 6899*********************************************************************************************** PP

                 HSEEEEEEEEEE--SSHHHHHHHHHHTTSEEEEEEEESSEB--TTBSS--BE--EEEEEEEETTSSE.EEEEEESBSS-HHHHHHHHHCT---STTSEE CS
       Ldh_2 102 hGigivavrnsnhfGaagyyaemaaeaGligiaftnssplvaptggkeavlGtNPiafaaPakeeep.fvlDmAtSvvargkievaarkgkpiPegwal 199
                 +Gig+++v++snhfG+ ++ +++a++a++++++ftnssp+++p+ggk+++lG  Pia++aPa+++ p f+lDmA Sv+argki +a+r+g++iP +wal
  CCE27856.1 116 YGIGMATVKHSNHFGMSAWVVQQALDANMMSLVFTNSSPALPPYGGKTKLLGVSPIACGAPAQGTMPnFILDMAPSVAARGKIYKAKRRGEKIPLDWAL 214
                 **************************************************************888666******************************* PP

                 ETTSSEES-HHHHHCCCEE-BTTTHHHHHHHHHHHHHHTCTTTS-HGGGSSSSSSCTSS-SSEEEEEEEEEGGGTT.HHHHHHHHHHHHHHHHTS-BST CS
       Ldh_2 200 DadGnpttDPaaaleggallplGghKGyglalmvelLagvLsgaatgkevsgsedeekkpaklghffiaidpeafgdaeefkervdalldelrasppae 298
                 Da+G+pt+DP+aal+ g++lp+Gg KG++l++m+++++gv sg+a++ +v+g +d++++++  ghf++a++p+ f+d e+f++r+++l++++  + +a+
  CCE27856.1 215 DAEGHPTDDPEAALD-GVMLPMGGPKGSALSIMMDVFSGVFSGSAFAGHVTGPYDPSRPADV-GHFVVAMKPDLFMDLEAFRSRMEHLYERVVGAAKAP 311
                 ***************.**************************************88877665.************************************ PP

                 TTSS---TTHHHHHHHHHHHHH-EEEEHHHHHHH CS
       Ldh_2 299 gadevllPGereaaaraerlkeGipldeavleel 332
                 g +++++PGe e+  ++er+++Gipl ea +e+l
  CCE27856.1 312 GVERIYFPGEMEQLIEEERRRTGIPLVEAEIEAL 345
                 *****************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2661.69
//
Query:       CCE27857.1  [L=342]
Description: probable Alpha-L-arabinofuranosidase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-55  188.1   5.8    2.3e-55  187.8   5.8    1.0  1  Glyco_hydro_62  Glycosyl hydrolase family 62


Domain annotation for each model (and alignments):
>> Glyco_hydro_62  Glycosyl hydrolase family 62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.8   5.8   1.3e-59   2.3e-55       2     271 ..      29     310 ..      28     311 .. 0.84

  Alignments for each domain:
  == domain 1  score: 187.8 bits;  conditional E-value: 1.3e-59
  Glyco_hydro_62   2 alpssykwtstgalaepksgwaalk...dftevvingkhivyasnadtgskygsmafspfsdwsemasasqtatsfk......avaptlfyfapk 87 
                     +lps ++wtst+ l  pk+   +lk   d + +  +gk+ v+as+a+ ++ y  + + +f+dw++   ++   ++++        ap +f+++ +
      CCE27857.1  29 SLPSKFSWTSTQPLIYPKNDGRNLKgikDPSVIFHEGKYHVFASTAQ-KAGY-NLVYLSFTDWDQAQESTFHYLDQTpigkgyRAAPQIFRIEEQ 121
                     69*****************98887611155667789********994.4445.577888999988776654444444111112469********* PP

  Glyco_hydro_62  88 kiwvlayqwgpttfsyrtssdptnangwsaeqalfsg...ki.sdsstga.idqtvigddknmylffagdngkiyrssmpidnfpgsfgsqsevi 177
                      +w l yq   +  +y t +d  ++ gwsa+++++     ki s+   g  +d  vi+d++n ++f + dng+++r+     +fp++f      +
      CCE27857.1 122 GLWYLVYQGRGA--TYSTNKDINDPSGWSAPKTFYPSipsKIqSGMGHGQwVDMWVICDSTNCFMFSSDDNGHLWRAQTKLADFPSGFSQPVIAL 214
                     ********6554..688***************99865111454444444359************************************9999999 PP

  Glyco_hydro_62 178 lsdttenlfeavqvytvdgqnkylmivealgangkryfrsftasslngewtaqaatesnpfagkan....sgatwtndishgdlvrnnpdqtmtv 268
                         + +l+ea +vy+v g   yl+ivea g +g+ryfrs+ta++l+ +wt+ a te+npf    n     g +wtn+ shg++vr+n dqtmt+
      CCE27857.1 215 QESNVWKLYEASNVYNVGG--AYLLIVEAAGNDGNRYFRSWTAKTLDAQWTSLANTEQNPFIRSNNvkfgDGKAWTNNFSHGEVVRTNVDQTMTI 307
                     999999***********99..9***************************************876663333699********************** PP

  Glyco_hydro_62 269 dpc 271
                     dpc
      CCE27857.1 308 DPC 310
                     *** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2447.30
//
Query:       CCE27858.1  [L=437]
Description: uncharacterized protein CPUR_01332 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-05   23.5   0.3    7.9e-05   22.3   0.1    1.8  2  Lactamase_B_2  Beta-lactamase superfamily domain
    0.00034   20.5   0.1    0.00097   19.1   0.1    1.8  1  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.76   6.8e+03       2      10 ..      79      87 ..      79     111 .. 0.71
   2 !   22.3   0.1   8.8e-09   7.9e-05       6      80 ..     135     205 ..     134     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.76
                   EEEES--TT CS
  Lactamase_B_2  2 riLiDagpd 10
                   +iLiD+++ 
     CCE27858.1 79 NILIDPWLQ 87
                   799999876 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 8.8e-09
                    S--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCH CS
  Lactamase_B_2   6 DagpdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylale 80 
                    D+  d++    +  qP+++ ++++ idaV+++h+  DH++   tl el p++ p++a++  ++ ++++  ++   
     CCE27858.1 135 DPASDTADS--PPSQPRTRESSVSMIDAVVVSHEFTDHCHQ-STLLEL-PRSTPIFASDVAADLIRSWRYFHRVI 205
                    566665444..44478889999*****************85.899995.66799***999999888886655544 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   1.1e-07   0.00097      18      68 ..      79     189 ..      73     279 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.1e-07
  Lactamase_B_3  18 rilvDPf..............kanlgyeppa......................................................eeaDlvlisqa 45 
                    +il+DP+              +        +                                                        +D+v++s++
     CCE27858.1  79 NILIDPWlqgpqsdvhaifstQ--------WhvvapsvatiddlndvlrdiecspndhqqssgqdpasdtadsppsqprtressvSMIDAVVVSHE 166
                    6888888555555444444440........144444444444444555555555555555555555666667777789999999999********* PP

  Lactamase_B_3  46 ledHahletlkqlaenvkvleeg 68 
                     +dH+h  tl +l + +++ +++
     CCE27858.1 167 FTDHCHQSTLLELPRSTPIFASD 189
                    ***********996666666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3290.55
//
Query:       CCE27859.1  [L=403]
Description: uncharacterized protein CPUR_01333 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-09   37.0   0.2    8.9e-09   36.3   0.2    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    5.8e-06   25.8   0.0    9.5e-06   25.0   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
    0.00086   19.0   0.1     0.0016   18.2   0.1    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.2   1.5e-12   8.9e-09       2     211 ..      97     358 ..      97     364 .. 0.51

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.5e-12
                    EEE--GC.....G....C...HHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH...CHHH..HHHHCCTT...........TTSE...EEEEET CS
  Abhydrolase_6   2 lllHGagssassW....l...vapLaallaagvhvlapDlpGhGrsdpppldled...ladl..aalldelaa.........gggpv...vlvGHS 73 
                    +l HG g+++s W    +   ++ ++++l++g+ +l+ D+ G G  +++  ++++   ++++  + +++   +         +++++   + vGHS
     CCE27859.1  97 ILTHGVGFDRSYWdypyHnwnYSYVREALRDGYSTLSWDRLGVG-ESSHGEAVNEiqiALEIaaLKAVT---EmaregkipqVCRQFsklIHVGHS 188
                    688**********976425567788*******************.556666666633323331122333...14558877886666677688**** PP

                    CHHHHHHHHHHCC..EE..EEES-.......----TTT..S----TTHHHHHHTT-C..CCCHCCH....S-HSCCCCHHH..CCCCHCHCCCGHH CS
  Abhydrolase_6  74 lGGalalaaaplalvvg..vlldppp.....talpagl..laaalelllallallrl..lawlsre....plprlfladed..adaawrarlarla 152
                    +G a+  a+ +  ++++  ++l + +     +    ++  laa ++++++ ++l  +  +++ + +      +  f+a++   +      ++  ++
     CCE27859.1 189 FGSAMTYALSAMYPDISdgIVLTGFSqvpkyM----AYfaLAANFAPVRRIRSLSQKygPGYIAPRskigVHT-NFFAPDNfdP-HLLESAFENGQ 278
                    **997777444443344469999944422221....2223333333333333322223334443333333122.3333222111.22222222222 PP

                    HHCC..HHCHTTCCHHTT-TTGCEEE........C........TT-CHHHHCHHCCCH....STTEEETCE...SSS-HHH CS
  Abhydrolase_6 153 alla..glgllpaaawadlpvpllvl........g........geDplvprllerlla....qagarlpvvlpgaGHlphl 211
                    + +    l   +++  +d   p++++        +        g+D++ p l+e+       +a++   +v+p+ GH +++
     CCE27859.1 279 PATVgeLLTVGSVPSSTDFAGPVMIItgdrdvpfCggncmatmGDDASGPNLIEQSSSnfkkAAVFNA-TVVPDVGHGLNF 358
                    11111111122344555555555554211111111122222336666777777777776554455555.99******6665 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.6e-09   9.5e-06      19     114 ..     117     217 ..     112     259 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.6e-09
  Hydrolase_4  19 ryaelaeaLaaqGfavyalDhrGhGrse.gkrghvpsfddyvdDlaafvekvkeehpel......plfllGhSmGGliallyllrypdkvaglilsaP 109
                   y+ + eaL + G++++ +D  G G+s  g+ +   ++   ++ l+a++e+++e +  +      +l+ +GhS G++++ ++ ++ypd  +g++l++ 
   CCE27859.1 117 NYSYVREAL-RDGYSTLSWDRLGVGESShGEAVNEIQIALEIAALKAVTEMAREGKIPQvcrqfsKLIHVGHSFGSAMTYALSAMYPDISDGIVLTGF 213
                  555555555.67***************87888877888888899999999999776655688999***********************666**99984 PP

  Hydrolase_4 110 alkik 114
                    +++
   CCE27859.1 214 S-QVP 217
                  4.444 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   2.6e-07    0.0016      23     106 ..     122     213 ..     102     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.6e-07
                    HHHHHTTSEEEEEEETTSTTSSSTTTGB........CHHSHHHHHHHHH..HH.HHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE CS
  Abhydrolase_1  23 paLakdgfdvillDlrGvgySspapacin.......ddygtasvaddld..ri.ldalgddkltlvGhSmGGmialayaaeyperVkalvllga 106
                    +   +dg+ ++  D +Gvg+Ss + a +            + +v ++ +  +i +      kl+ vGhS+G+++  a+ a+yp+  +++vl+g 
     CCE27859.1 122 REALRDGYSTLSWDRLGVGESSHGEAVNEiqialeiA--ALKAVTEMARegKIpQVCRQFSKLIHVGHSFGSAMTYALSAMYPDISDGIVLTGF 213
                    445566******************9954477655332..4555777777888888888999************************9**999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3196.95
//
Query:       CCE27860.1  [L=433]
Description: uncharacterized protein CPUR_01334 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-13   48.7   0.0    4.9e-11   42.0   0.0    2.7  2  Glyco_transf_54  N-Acetylglucosaminyltransferase-IV (GnT-IV) 
      0.005   17.5   0.7      0.011   16.4   0.7    1.5  1  Phage_holin_4_2  Mycobacterial 4 TMS phage holin, superfamily


Domain annotation for each model (and alignments):
>> Glyco_transf_54  N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   5.4e-15   4.9e-11      38     195 ..      77     225 ..      45     232 .. 0.83
   2 ?   -1.1   0.0     0.076   6.8e+02     260     279 ..     370     389 ..     353     395 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 5.4e-15
  Glyco_transf_54  38 lgkgrtgvs..lvlGiptvkrekksylldTlesllselseeekkdlvvvvfiaetdeeyvksvveeikkkfkkevesgllevisppasyYpnls 129
                       gk+ t +s  l +Gip+v+r+  syl+ Tl sl + ls+ee++ l  vv++a t++           ++++++ e  l+++    +sy  + +
       CCE27860.1  77 EGKNATTRSpeLCIGIPSVQRDGISYLKATLGSLQHGLSDEERDRLRFVVLLAHTNQ-----------TQHTDHGEPWLVKMADSLPSYHDSAE 159
                      46666666667*******************************************996...........57888888888998888888888888 PP

  Glyco_transf_54 130 klkktlnDskervkwrtkqnldyafLml.yaqskgeyylqleDdvvakkgfltkikkfvlakkskeW 195
                      +l+ ++  + +  +  +k ++dy++Lm   a+s + y l +eDdvv   g+ +   k+v +   k+W
       CCE27860.1 160 RLALAIRME-DNRSHAVKSKFDYSILMEeCAKSAAPYMLLVEDDVVFLDGWRHRTVKAVGTAMTKSW 225
                      887776655.4467899**********736788889999*******999999988888888877777 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.076
  Glyco_transf_54 260 lrirfkpSlFqhvgtqSsle 279
                      lr  + p + qhvg +S +e
       CCE27860.1 370 LRWALTPVVMQHVGSKSTYE 389
                      566678999********987 PP

>> Phage_holin_4_2  Mycobacterial 4 TMS phage holin, superfamily IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.7   1.2e-06     0.011      26      75 ..     248     305 ..     233     321 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.2e-06
  Phage_holin_4_2  26 vas.....fltallaalvlgllnal...vkpilkllslpltiltlGlftlvinalmll 75 
                      ++s      ++a++aa +l+lln     + p  ++++ p+ il+lGlft +i  l ++
       CCE27860.1 248 IESwpkyaAWSAAFAASILSLLNLAkryMAPARRFITRPVFILSLGLFTPLILLLFFA 305
                      444444446889999********97222567788***************999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3517.69
//
Query:       CCE27861.1  [L=330]
Description: uncharacterized protein CPUR_01335 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-76  254.6   5.0    1.1e-75  254.3   5.0    1.1  1  Scs3p          Inositol phospholipid synthesis and fat-storag
  ------ inclusion threshold ------
      0.098   12.4   2.4      0.096   12.4   0.7    1.7  2  Cation_efflux  Cation efflux family


Domain annotation for each model (and alignments):
>> Scs3p  Inositol phospholipid synthesis and fat-storage-inducing TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.3   5.0   1.3e-79   1.1e-75       2     246 .]      83     312 ..      82     312 .. 0.83

  Alignments for each domain:
  == domain 1  score: 254.3 bits;  conditional E-value: 1.3e-79
       Scs3p   2 lnyfankdnilNvlFVKrgWfWttlvvllllltepryeastsakstarkrrlkkallrylilTlwWilftqwffgppimdrifvltGgkCellfevfde 100
                 ++yfa+k+ni+NvlFVKrgW Wtt++++++llt+p    s  +     + r  +a+lr++++T wW+l+tqwffg+p++dr f++tGg+C l+++   e
  CCE27861.1  83 PSYFARKSNIFNVLFVKRGWGWTTFAFYFFLLTHP----SGGSGGLDLTPRRLRAILRWAAVTGWWFLVTQWFFGAPLIDRGFRWTGGRCDLVQQ---E 174
                 68********************************9....333334445555666677**********************************6544...4 PP

       Scs3p 101 eseeeeelsekvtsaaCkaaggkWkgGhDiSGHvFLlvlssllLleelapvvakralaklkkekkkkarkvkeekrakllangav..aeveeeekk... 194
                  +   + +   +t++aCk++gg+W+gGhDiSGHvFLlvl++ +L++e+ ++v ++a +++             e+r+ ++ +gav  a+v +e++    
  CCE27861.1 175 IRMGDAGVGDILTAMACKTSGGRWSGGHDISGHVFLLVLGISFLVQEIGWTVGRWASRSM-------------EERCVIMYDGAVkgANVVAETEAgqg 260
                 44445689******************************************9999876543.............34455555555544444433322122 PP

       Scs3p 195 llekalllenilllalvglwlwmllmTaiyFHtllEklsGLlvallvvllvY 246
                   + +l ++ ++++a+++l +wmllmTaiyFHt++Ekl+GLl+al+++++vY
  CCE27861.1 261 RGNYSLGIGGKTAVAIAALQSWMLLMTAIYFHTWFEKLTGLLTALIGIYVVY 312
                 4457889999*****************************************9 PP

>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.3   2.7e+03      69      86 ..      42      59 ..      40      74 .. 0.81
   2 ?   12.4   0.7   1.1e-05     0.096      96     188 ..     199     312 ..     186     317 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.3
  Cation_efflux 69 lgalvsgllllglavfll 86
                   l al+ ++l++g+ ++++
     CCE27861.1 42 LLALFPIILVFGTLFSAV 59
                   678888888888888877 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.1e-05
  Cation_efflux  96 egereihaglalvvalvslvvnlalllilrragrkl..............rsaalkaaalhvlg....Daltslgvlvsalvillfnlksg....p 169
                    +g++ i  ++ l+v+++s++v+ +++   r a+r++               + + +++a + +g     + +  +v+++al +++   + +    +
     CCE27861.1 199 SGGHDISGHVFLLVLGISFLVQEIGWTVGRWASRSMeercvimydgavkgANVVAETEAGQGRGnyslGIGGKTAVAIAALQSWMLLMT-AiyfhT 293
                    6789999999**************************************88555555555555554444455777777777777776333.357779 PP

  Cation_efflux 170 laDpvaslligliilysal 188
                    +++ +++ll +li +y  +
     CCE27861.1 294 WFEKLTGLLTALIGIYVVY 312
                    9999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2414.85
//
Query:       CCE27862.1  [L=367]
Description: uncharacterized protein CPUR_01336 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-19   69.5   0.0    3.3e-19   68.8   0.0    1.4  1  ATP_transf  ATP adenylyltransferase
     0.0025   18.5   0.2      0.005   17.6   0.2    1.5  1  HIT         HIT domain


Domain annotation for each model (and alignments):
>> ATP_transf  ATP adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   3.7e-23   3.3e-19       1      66 []     293     364 ..     293     364 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 3.7e-23
  ATP_transf   1 sYNllmtkewmvviPRsaegaele.....evgglslNslglaGtllvkseeeldalkeepgpl.evLaevGv 66 
                 sYNl +t+++mv++PR aeg  +      evg+lslN++ laGt+lvk+  e+d+l+ +p+ l +vL+++G+
  CCE27862.1 293 SYNLGLTSTRMVLCPRLAEGGPVLdqdghEVGRLSLNGTLLAGTALVKNAVEWDTLRGQPSGLvDVLRRIGI 364
                 8*********************99***********************************99999******96 PP

>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   5.5e-07     0.005      14      97 ..      95     182 ..      92     183 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.5e-07
                 SEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCT....TCCCEEEEEEESGGGT-SSSS-EEEEEEC-T CS
         HIT  14 lvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkf....knkglrvvinngahagqsvahlHiHviprre 97 
                   +++l++++ + gh+ + +++  ++ h l+e++l + ++ +k   ++ ++      + +gl  + n g+h+g s +h H+  +p ++
  CCE27862.1  95 AHYIVLNKFAVVSGHFILATRAFRPQNHVLEEADLEATMACIKAYGQHQGQLKeaghEHDGLFAFFNSGEHSGASQPHRHLQFLPVDQ 182
                 56899******************************************9998668888889********************98877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2877.73
//
Query:       CCE27863.1  [L=32]
Description: uncharacterized protein CPUR_01337 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        64  (0.00356964); expected 358.6 (0.02)
Passed bias filter:                       52  (0.00290033); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 254.72
//
Query:       CCE27864.1  [L=387]
Description: uncharacterized protein CPUR_01338 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2993.99
//
Query:       CCE27865.1  [L=418]
Description: uncharacterized protein CPUR_01339 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3526.40
//
Query:       CCE27866.1  [L=73]
Description: uncharacterized protein CPUR_01340 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 590.45
//
Query:       CCE27867.1  [L=351]
Description: uncharacterized protein CPUR_01341 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-13   49.6   0.0    4.6e-13   48.8   0.0    1.3  1  Man-6-P_recep  Mannose-6-phosphate receptor
    1.9e-11   44.3   0.0    5.3e-11   42.9   0.0    1.7  2  ATG27          Autophagy-related protein 27
    8.7e-07   29.1   0.2    4.8e-05   23.5   0.0    2.2  2  CIMR           Cation-independent mannose-6-phosphate recepto
  ------ inclusion threshold ------
       0.16   12.3   3.3       0.35   11.2   3.3    1.5  1  DUF2842        Protein of unknown function (DUF2842)


Domain annotation for each model (and alignments):
>> Man-6-P_recep  Mannose-6-phosphate receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0     1e-16   4.6e-13     110     215 ..     196     304 ..     180     336 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 1e-16
  Man-6-P_recep 110 kkekrkalimisCnkkvladeltlvveerekeedcfylfeldssvaC....pkeesklsvGsillivllslvavyligGflyqrlvvgakGleqiP 201
                     ++++ + i   C++++ + +  + +      ++c y+fe  s  aC    p+++ ++  Gs++ i+l+  + vy +gG++y+r + +a+G  q+P
     CCE27867.1 196 PTKRKSTTISFLCDRDPSSAQAAISFV-GVSPDECSYFFEARSIYACagaePHKPGSVGPGSVFGIILVIAILVYALGGVFYNRTISNARGWRQLP 290
                    455667788899999888777766544.456789*************33322344567779*********************************** PP

  Man-6-P_recep 202 nyafWqdlGnlvad 215
                    ny++W  + n+ +d
     CCE27867.1 291 NYTLWAGIWNFFSD 304
                    *******9999888 PP

>> ATG27  Autophagy-related protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.5   2.3e+03      52      63 ..      75      86 ..      29      92 .. 0.78
   2 !   42.9   0.0   1.2e-14   5.3e-11     123     250 ..     186     307 ..     136     317 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.5
       ATG27 52 nttytldiCepl 63
                 +++tl+iC+++
  CCE27867.1 75 GKNFTLNICASV 86
                578999999865 PP

  == domain 2  score: 42.9 bits;  conditional E-value: 1.2e-14
       ATG27 123 lrlelkggkygkkkqkaiieflCd......ekslkfksydeeeeeekdvlrlewktkyACekaekdkkdsskkkeksgwGfFtwlfiilflataaYlif 215
                  + + k + + +k  +++i+flCd      +++++f++ +++e    + + +e ++ yAC++ae +k++s       g G  +++ iil++a+++Y ++
  CCE27867.1 186 RTAKDKDKDTPTKRKSTTISFLCDrdpssaQAAISFVGVSPDE----CSYFFEARSIYACAGAEPHKPGSV------GPG--SVFGIILVIAILVYALG 272
                 2333333444889999*******87776666666666666655....99************9988888754......334..58999************ PP

       ATG27 216 gswlNynryGargwDllphgdtirdlPyllkDvvr 250
                 g+++N +  +argw  lp+  ++  +  ++ D+  
  CCE27867.1 273 GVFYNRTISNARGWRQLPNYTLWAGIWNFFSDMFV 307
                 ******************************99875 PP

>> CIMR  Cation-independent mannose-6-phosphate receptor repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.014        61      83     143 .]      74     142 ..      25     142 .. 0.78
   2 !   23.5   0.0   1.1e-08   4.8e-05       3      47 ..     199     245 ..     197     251 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.014
        CIMR  83 kkkhfyinvCk.......peakiegCp.saaavClvdkdksvNLGkvqsspqaedgsiqlsYvnGdkcg 143
                   k+f +n+C        +  +++     ++++  +++++ + +G   + +     +++l+Y+ G  cg
  CCE27867.1  74 YGKNFTLNICAsvvdpvtDVMGVSKSSwGNVSAYYMAHGNIYSIGSESQDLVSRGRKLVLQYTGGSPCG 142
                 468999****99988544333333333467888889999999999999999999999*****9999986 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.1e-08
        CIMR   3 qratvirFvCnetaled..apvflkedigdcsylFewetalACveke 47 
                 +++t+i F C+++  +   a  f + ++++csy+Fe +  +AC   e
  CCE27867.1 199 RKSTTISFLCDRDPSSAqaAISFVGVSPDECSYFFEARSIYACAGAE 245
                 689********99765555899*********************9554 PP

>> DUF2842  Protein of unknown function (DUF2842)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   3.3   7.8e-05      0.35       7      49 ..     260     301 ..     257     310 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.8e-05
     DUF2842   7 vlllvllvvYavvavslaelllgrapalvqllvYvvlGllWvl 49 
                 ++l++++ vYa+  v +  ++ ++a  + ql  Y +   +W +
  CCE27867.1 260 IILVIAILVYALGGVFYNRTI-SNARGWRQLPNYTLWAGIWNF 301
                 78999999**99998888777.**************9999954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2834.87
//
Query:       CCE27868.1  [L=486]
Description: probable c-14 sterol reductase ERG-3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.7e-168  559.4   1.5   5.4e-168  559.2   1.5    1.0  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
    0.00012   21.7   0.6    0.00035   20.2   0.3    2.0  1  DUF1295     Protein of unknown function (DUF1295)
  ------ inclusion threshold ------
       0.99    9.5   0.0       0.99    9.5   0.0    2.7  4  DUF5391     Family of unknown function (DUF5391)


Domain annotation for each model (and alignments):
>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  559.2   1.5  9.1e-172  5.4e-168       3     432 .]      13     486 .]      11     486 .] 0.96

  Alignments for each domain:
  == domain 1  score: 559.2 bits;  conditional E-value: 9.1e-172
  ERG4_ERG24   3 ieyefggeigalgikiglp....vlelylnaiskfealklllpksldlaelkneikeldllvfegaiwerklftvfllfyvlqavlylllpGkvveGle 97 
                   yef g+ ga++i++glp     + + +n+is+++a++ll p++l l +lk e+++++  ++  a w+++   +  ++y+l+++ly++lp + veG+e
  CCE27868.1  13 HGYEFFGPPGAFAISFGLPllvyFFAFACNDISGCPAPSLLSPRTLSLNQLKLEVGWPQDGIWGLASWKATGAVL--AYYLLSLILYRVLPATEVEGTE 109
                 569****************6555566679************************************9999886555..5********************* PP

  ERG4_ERG24  98 LsngkkLkYkinalas...lllvlaillvlqvtelfeltvlidnfvqlisvailfafalaivlYvrslkvkerkkd.kqlaaggvsGnliYDffiGreL 192
                 Ls g +LkY+ n+l+s   +l+ la+ +v+q +e++++t++++n+v++++++il+++a+a+++Y+rs+ vk+++ + ++laagg +Gn++YD+fiGreL
  CCE27868.1 110 LSCGGRLKYRFNTLYSstvTLAALAAGTVAQGAEFPVWTFISENYVEILTANILVSYAIATFVYIRSFSVKPGNAElRELAAGGHTGNMLYDWFIGREL 208
                 ***************987778888999************************************************9*********************** PP

  ERG4_ERG24 193 nPRlg.....slDlkmFlelRlgllllllinlaallkqyklygkvtdslllvllaqllYvfdgvkneeavlttmDittdgFGFmLaFgdlvlvPftYsl 286
                 nPR++     ++Dlk+++elR+g+++++++n+a +++qy+ +g vtds++ ++++q++Y++d+ + e+a+lttmDittdgFG mLaFgdlv+vPf+Ys+
  CCE27868.1 209 NPRVTipligEVDLKEWCELRPGMMGWIILNCAWCAQQYRNFGFVTDSIICITVVQAVYIVDSWWFEPAILTTMDITTDGFGTMLAFGDLVWVPFIYSM 307
                 ***99999889**************************************************************************************** PP

  ERG4_ERG24 287 qtlYLsvhPselgwstvlvailvvlligyyiFrsansqknnFRtnPedpklkllkyiqtktGskLlvsGWyglarkinYlgDwlqslswsLatgfq... 382
                 qt+YLsvhP++lg  + l++   ++++g+yiFrsansqkn FRtnPed ++ +lkyi+tktGskLl++GW+g+ar+inYlgDw+qs+++sL+tg+    
  CCE27868.1 308 QTRYLSVHPVSLGPLG-LAGAIGLIALGFYIFRSANSQKNTFRTNPEDAQVAHLKYIETKTGSKLLITGWWGIARHINYLGDWIQSWAYSLPTGMSgyq 405
                 ***************8.5565667789************************************************************************ PP

  ERG4_ERG24 383 ...............................svlpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkkvpykiipyvy 432
                                                 +++yfy+lyF++lL+hR+ RD+ekC++kYG+dw++Yk++v+y+iip++y
  CCE27868.1 406 ilaagagaagegvfimrdgrqviqgdsrgwaVPITYFYILYFAILLIHRDRRDDEKCQRKYGDDWQKYKQIVRYRIIPGIY 486
                 *******************************************************************************98 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3   5.8e-08   0.00035     125     183 ..     328     399 ..     289     414 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.8e-08
     DUF1295 125 lalwlvgivlealaDqQlsaf............kkdpankgk.vldsGLwrysRHPNYfgealiWwglflia 183
                 + l+ +g+ +   a  Q+++f            k+  +  g  +l +G w  +RH NY+g+++  w++ l +
  CCE27868.1 328 IGLIALGFYIFRSANSQKNTFrtnpedaqvahlKYIETKTGSkLLITGWWGIARHINYLGDWIQSWAYSLPT 399
                 34556677777789999999977777777777766555556559*******************999998755 PP

>> DUF5391  Family of unknown function (DUF5391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00016      0.99      46      67 ..      77      98 ..      61     105 .. 0.88
   2 ?   -3.6   0.2       1.8   1.1e+04      55      67 ..     162     174 ..     155     180 .. 0.50
   3 ?   -1.4   1.4      0.37   2.2e+03     111     129 ..     258     276 ..     232     282 .. 0.54
   4 ?   -3.8   0.0         2   1.2e+04      44      60 ..     320     337 ..     315     339 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00016
     DUF5391 46 lgmwksiGiillfylvplllyi 67
                l  wk+ G +l++yl+ l+ly 
  CCE27868.1 77 LASWKATGAVLAYYLLSLILYR 98
                567******************5 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.8
     DUF5391  55 illfylvplllyi 67 
                 il+ y +  ++yi
  CCE27868.1 162 ILVSYAIATFVYI 174
                 4444444444444 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.37
     DUF5391 111 gvivlciasiivnviWflv 129
                   i +  a+ iv++ Wf  
  CCE27868.1 258 ICITVVQAVYIVDSWWFEP 276
                 1122334567788888765 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 2
     DUF5391  44 nslgmwksiGiill.fyl 60 
                 + lg+  +iG+i l fy+
  CCE27868.1 320 GPLGLAGAIGLIALgFYI 337
                 567888899988543776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3842.04
//
Query:       CCE27869.1  [L=874]
Description: probable beta-glucosidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-41  140.4   0.0    1.7e-40  139.2   0.0    1.7  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    2.3e-38  132.3   0.0    4.2e-38  131.5   0.0    1.4  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    1.7e-16   60.1   0.3    3.4e-16   59.1   0.3    1.5  1  Fn3-like         Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.2   0.0   2.9e-44   1.7e-40       1     204 []     409     668 ..     409     668 .. 0.83

  Alignments for each domain:
  == domain 1  score: 139.2 bits;  conditional E-value: 2.9e-44
                      -EEEEEGSS--S-S-STEEEEEESGGGS................SS-SS-BSSS----S---HHHHHHHHHHH.............-HHHHHHH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxx RF
  Glyco_hydro_3_C   1 iVLLkNennlLPLkkklkkiaviGpnad................etlklGggsgtvtvsylvsplegirerles...........eegideave 67 
                      +V+LkN  + LPL kk k +aviG++a                 +tl + +gsgt++++yl++p +++++++ +            e ++  + 
       CCE27869.1 409 TVILKNT-GSLPL-KKPKFLAVIGEDAGpnlkgpngcddrgcdnGTLAMLWGSGTTQFPYLITPDSALQRQAIEdgtryesvlsnYEWTATQKL 500
                      599***9.*****.7778**************************************************9999668********95444444444 PP

                      HHHHTSEEEEEEEES...SB-TT........SCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTT.GTTTEEEEEE-S--GCCHHHHH CS
                      xxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  68 aakeaDvavvvvgedpeiegEgv........Drtdlalpeaqdelikavaaanknvvvvlqsggpvavepw.keenvkAilaawlpGqegGtai 152
                      + + + + vv+v++d   +gEg+        Dr++l+l ++ delik+v++ ++n++vv++s gpv v++w +++n++Ai++a lpGqe+G+++
       CCE27869.1 501 ITQPNVTSVVFVNAD---SGEGYinvdgnmgDRKNLTLWKNGDELIKNVSSLCSNTIVVIHSVGPVLVTDWyQNPNISAIVWAGLPGQESGNSL 591
                      555555679******...9999999999999*****************************************999******************* PP

                      HHHHTTSS---B--SS-EESSSGGG...........................................S-----SETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxx.xx.....xxxxxxxx..........................xxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 153 advLfGdvnPsGkLpvtfpksledl.pd.....dyyeekdt..........................ykfegtplYpeGlglsY 204
                      +d+L+G+ +P G+ p+t+  +l+++ +d     +      +                           +++g+p+Y++G+gls+
       CCE27869.1 592 TDILYGKTSP-GRTPFTWGPTLKSYgTDvlrkpN------NgknapqddfkegafidyrhfdkvapgKNSSGAPIYEFGYGLSW 668
                      **********.*********99977422221111......11122333445566666666666666433667777888888875 PP

>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.5   0.0   7.1e-42   4.2e-38      63     317 ..      91     347 ..      75     349 .. 0.88

  Alignments for each domain:
  == domain 1  score: 131.5 bits;  conditional E-value: 7.1e-42
                    ...S--EEEE---BTTB---SSS.---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B--.---STTSSSGGGSS-SSHHHHHHHHHHH CS
  Glyco_hydro_3  63 rlgiPlllavDqegGlvqrlgeg.tlfPsalalaatssldlikelgriiakelralgididfaPvvd.vnrdprngigvrsFsedpelvaalaaam 156
                    rlg++ l+  D   G++  +++    fP+ l  +at+s  l ++ g+++++e  a g+d++++Pv   ++r+p  g++ ++F+ dp+l ++  a++
     CCE27869.1  91 RLGLRSLCMQDGPLGIR--FSDYnSAFPAGLTAGATWSERLWRDRGKALGAENKAKGVDVTLGPVSGpLGRAPTGGRNAEGFGTDPYLQGRGLAST 184
                    6899999999*999999..88888*****************************************8549*************************** PP

                    HHHHHHTT-EEEEEEETTGTT-SSET.....TTSEEB-.....---HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIII CS
  Glyco_hydro_3 157 vkGlqgagvaatvKHFpghGdgavds.....hkelptv.....dhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLR 242
                    v G+q+agv+a++KHF+g  + +        +++++ +     +++ + ++e+++ pf  a++agv+s+M +   +++++++ +  ++kll ++L+
     CCE27869.1 185 VIGIQEAGVVACAKHFIGNEQENFRQapeavGYGFNITesvssNIDDKTMHEEYVWPFADAVKAGVGSIMCS---YNQVNNSYTCQNSKLLNGILK 277
                    ******************8544322112222555554411111678999***********************...********************* PP

                    IIS---SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SG.....HHHHHHHHHTTSS-HHHHHHHHHHHH CS
  Glyco_hydro_3 243 kelGFdGvvvsDalamkeiadrggkeeavvlaLkAGvDilLvpeertse.....ikalkkavkeGeltearidesvrrvl 317
                    +elGF+G+v+sD+            ++a + a  AG+D+++  +++  +      ++l  av +G +++ rid+ + r++
     CCE27869.1 278 DELGFQGFVMSDWQ----------AQHAGASAAVAGLDMSMPGDTVFNTgdsfwGANLTLAVINGTVPAYRIDDMAMRIM 347
                    *************9..........45556666679******9999987789997799*********************97 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.3   5.7e-20   3.4e-16       1      71 []     795     864 ..     795     864 .. 0.98

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 5.7e-20
                 EEEEEEEEESS-STTSBS-EEEEEEEEE.E-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESSS CS
    Fn3-like   1 evvqlYvsdpessverpvkeLkgFekve.LapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgtss 71 
                 ev qlYvs   +  ++pv++L+gFe++e +apG+s   + +l+r+++s wd+++q wv+     +v+vg+ss
  CCE27869.1 795 EVPQLYVSLGGE--KEPVRVLRGFERIEgIAPGQSVVFRHELTRREVSNWDTKSQGWVITGEAKKVWVGSSS 864
                 8********999..8*******************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 6698.58
//
Query:       CCE27870.1  [L=98]
Description: uncharacterized protein CPUR_01344 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 719.65
//
Query:       CCE27871.1  [L=211]
Description: uncharacterized protein CPUR_01345 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.067   13.0   0.1       0.63    9.8   0.1    2.1  2  TetR_C_1        Tetracyclin repressor-like, C-terminal domain
       0.13   10.7   0.0       0.18   10.3   0.0    1.1  1  Cellulose_synt  Cellulose synthase


Domain annotation for each model (and alignments):
>> TetR_C_1  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   7.1e-05      0.63      10      72 ..      77     139 ..      67     141 .. 0.90
   2 ?    0.7   0.0     0.045   4.1e+02      43      70 ..     177     204 ..     166     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 7.1e-05
                 HHHHHHHHHHHHHHHTSTTHHHHHHT-SS--HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH CS
    TetR_C_1  10 erlrelarslrrallrhrdlarlfagtprlspnelrgmErlLrllrdaGlsdedavyalslis 72 
                 + l++l+ +  ++ ++  +l +l +++  +s+++l  +E +L+  +++G +d+d++ +l++ +
  CCE27871.1  77 AYLETLCADNTTIAVARLELHQLRQRAAEPSTEFLVRFEAQLAKADRLGIDDRDKIGLLQMAL 139
                 678999999999999999**************************************9999876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.045
                 HHHHHHHHHHHHHHTT--HHHHHHHHHH CS
    TetR_C_1  43 elrgmErlLrllrdaGlsdedavyalsl 70 
                 +l  ++ +L ++ +aGl+ + a ya+++
  CCE27871.1 177 HLSRVNIVLGRMLPAGLNIDLAKYAFNV 204
                 67788999**************999987 PP

>> Cellulose_synt  Cellulose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0     2e-05      0.18     138     219 ..     125     207 ..     115     209 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2e-05
  Cellulose_synt 138 GnskrdhagiiqvllkksgaedveGnelprlvy.vsrekrpGydhnkkaGamnalvrvsavlsna.pfilnldcdhyinnskal 219
                     G + rd+ g++q+ l++  ++  + + lp l    s   rp  +hnk     + l rv  vl    p  ln+d  +y +n k +
      CCE27871.1 125 GIDDRDKIGLLQMALHTGFDKRCRTTTLPLLTLdCSTHSRP-VNHNKDGDEDDHLSRVNIVLGRMlPAGLNIDLAKYAFNVKHI 207
                     56789*************************97626777787.79******************8754899***********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1684.72
//
Query:       CCE27872.1  [L=329]
Description: uncharacterized protein CPUR_01346 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.6   0.0        0.3   11.7   0.0    1.5  1  DUF4296   Domain of unknown function (DUF4296)


Domain annotation for each model (and alignments):
>> DUF4296  Domain of unknown function (DUF4296)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.7e-05       0.3       6      33 ..     177     204 ..     172     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.7e-05
     DUF4296   6 peekMedilyDlhlaeamvsnnekslds 33 
                 pe+ M+dil D +la am s+++ +++ 
  CCE27872.1 177 PESRMVDILLDNALARAMFSEDPRYMEA 204
                 899****************988877543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2575.72
//
Query:       CCE27873.1  [L=278]
Description: uncharacterized protein CPUR_01347 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-06   25.7   0.0    9.7e-06   25.4   0.0    1.2  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   5.4e-10   9.7e-06      49     175 ..      40     173 ..      34     244 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 5.4e-10
       RVT_2  49 dydevfaPvirldsvrLllala...aeeelvvhqldvdsafLnae..ldeevyvkqPpGfeidreeekvykLnkslyGlkqapllW.nekidkvLkklg 141
                 ++  + +P i+  s rL++ala   +  +  ++  d+  a+++a+  l+ e+ v+ P         + v+++ k lyG   a++ W  +   + L+kl 
  CCE27873.1  40 EFILTQSPKIQRLSQRLIVALApylSARQIWLWIRDITQAYVQATskLQREILVQLPKEIRHRYGRKIVMRVIKPLYGKSGAGTHWwVTYFGHHLAKLL 138
                 5667899***999********94444556678889*******975338899**********99999****************9876168899******* PP

       RVT_2 142 ferseaesGlyvrgtgegk.livalyvddlliags 175
                 +e s+    l v ++ ++   i+++  dd l  g+
  CCE27873.1 139 METSTYDPCLLVTTEESDCfGIIGMQTDDTLGLGD 173
                 *********99988766664799******875553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2079.06
//
Query:       CCE27874.1  [L=153]
Description: uncharacterized protein CPUR_01348 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-12   47.2   3.1    2.2e-12   47.0   3.1    1.1  1  MAPEG     MAPEG family


Domain annotation for each model (and alignments):
>> MAPEG  MAPEG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   3.1   1.3e-16   2.2e-12       6     128 ..      19     148 ..      14     150 .. 0.82

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.3e-16
                 HHHHHHHHHHHHHHHHHHHHTT--SS---S.................SH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.T-HHHHHHHHHHHHHH CS
       MAPEG   6 gllallllllslivvkerrkakiaigegkana...........pralddklppklqrairahgNflEyvplfllavllaeltgaetglaallaaafvva 93 
                 ++++l ll + ++v+++ +   +  +++   +           + + ++ +++k+ ra++a  N +E++ lf++ v++   ++ +t +++ l + +++ 
  CCE27874.1  19 AAFGLCLLPHLYAVGSAGFT--V--YDN---SyprayrdtlvkDTSISKVQKQKILRAEAASLNGIETIGLFAASVIAGNYAQLDTATLNHLSLGYLFW 110
                 55666777777777777763..2..111...1122345568887788888899********************************************** PP

                 HHHHHHHH..HH-...SGGGHHHHHHHHHHHHHHHHHH CS
       MAPEG  94 Rvlhalgy..iag.gpppgRslgflltllvllvlslla 128
                 Rv+++l y  i++ + +++R+ ++ +t + l++ +++a
  CCE27874.1 111 RVAYTLSYifIQNrRLSWLRTAIWQVTGIYLAMFWIKA 148
                 ********8888999999*********99999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1124.45
//
Query:       CCE27875.1  [L=358]
Description: related to a retinal short-chain dehydrogenase/reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-40  137.0   0.0    6.6e-40  136.6   0.0    1.1  1  adh_short     short chain dehydrogenase
    2.2e-28   99.4   0.0    3.3e-28   98.8   0.0    1.2  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    3.9e-14   53.0   0.0    6.5e-14   52.2   0.0    1.3  1  KR            KR domain
    5.3e-05   22.4   0.0    7.7e-05   21.8   0.0    1.2  1  3Beta_HSD     3-beta hydroxysteroid dehydrogenase/isomerase f
    0.00019   21.0   0.0    0.00029   20.4   0.0    1.3  1  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.094   12.1   0.2       0.14   11.5   0.2    1.2  1  DUF1776       Fungal family of unknown function (DUF1776)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.0   2.2e-43   6.6e-40       2     191 ..      95     289 ..      94     293 .. 0.93

  Alignments for each domain:
  == domain 1  score: 136.6 bits;  conditional E-value: 2.2e-43
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHH.HHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevak.elkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 v++vtG++sGIG +i+++l+++G++v+v+d ++++ +   +  +k+  a + ++q+D+t+ ++v ++ ++++ +lg+  +LvnNAGit++ p+ e+ ++
  CCE27875.1  95 VAVVTGGCSGIGACIVRRLVERGVRVAVLDVQPKPPASGTDdDFKDPDALVRYYQCDITSPASVAEAADAIRRDLGHPTILVNNAGITRPLPILEMPAD 193
                 89******************************999887665155555999************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT....EEEEEEEESSBSSHHHHHHC CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptg....irvnavaPGlvdTdmakelr 191
                   ++v++vN  +   l++++lp+m++ ++G+I +v+S+a++ +++ +a YsAsKa   ++ +sla el+       +  ++ +P +v+T+++k+  
  CCE27875.1 194 VLQKVFAVNTLSHWTLVQQFLPHMISLNKGHIMTVASMASFIALPKGADYSASKASALSFHESLALELKHVYkadcVLTSIAHPNFVRTPLVKDFG 289
                 *******************************************************************98755577899999999999999998765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   1.1e-31   3.3e-28       4     161 ..     103     263 ..      98     309 .. 0.86

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 1.1e-31
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   sgIG+ i+++l e+G +v++ d++ +  ++ +++  ++ +a v  ++cD+t++++v+++++++++++g+  ilvnnagi+++   p+le++ + +++
    CCE27875.1 103 SGIGACIVRRLVERGVRVAVLDVQPKPpASGTDDDFKDPDALVryYQCDITSPASVAEAADAIRRDLGHPTILVNNAGITRP--LPILEMPADVLQK 197
                   8**************************887787777777766667*************************************..************* PP

                   HHHHHTHHHHHHHHHHHHHCT..SCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG CS
  adh_short_C2  98 aldvnlyslfllakaalplmk..eggsivnlssvgaervvpnynaygaaKaalealtrylAvelgp 161
                   +++vn+ s + l++++lp+m   ++g i++++s+++ +++p+ + y+a+Ka+  ++  +lA el +
    CCE27875.1 198 VFAVNTLSHWTLVQQFLPHMIslNKGHIMTVASMASFIALPKGADYSASKASALSFHESLALELKH 263
                   ******************5541255**************************************986 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   2.2e-17   6.5e-14       4     154 ..      97     248 ..      95     264 .. 0.88

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 2.2e-17
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tGG+ g+G  ++r l+e+g r  vl       ++ ++ + + +++ +a v+++++D++++++v+++ ++i+++ +  +  ++ Ag++r  ++ em a
  CCE27875.1  97 VVTGGCSGIGACIVRRLVERGVRVAVLDVQP---KPPASGTDDDFKDPDALVRYYQCDITSPASVAEAADAIRRDLGHPTILVNNAGITRPLPILEMPA 192
                 89*******************9987776555...444444568999******************************88889****************** PP

                 HHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHH CS
          KR 103 edleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNa 154
                 + l++v+a      w L + + +     +  ++++++S+a+++  ++ a+Y+a  a
  CCE27875.1 193 DVLQKVFAVNTLSHWTLVQQFLPhmisLNKGHIMTVASMASFIALPKGADYSASKA 248
                 *****************999988686667789*******************99765 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.6e-08   7.7e-05       1      66 [.      97     164 ..      97     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.6e-08
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk....viegDvtdkdkleealeg 66 
                 vvtGg+  +G+ +v++Lv+++    v vlD++ +p+ + +   ++  +    + ++D+t+ +++ ea + 
  CCE27875.1  97 VVTGGCSGIGACIVRRLVERG--VRVAVLDVQPKPPASGTDDDFKDPDalvrYYQCDITSPASVAEAADA 164
                 8********************..59********9999877777776666678**************9876 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   9.8e-08   0.00029       2      62 ..      97     164 ..      96     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 9.8e-08
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfke 62 
                 +VtG+   iG+ +v++l e+g++v +ld +++  +++ ++d        + +++d+t +++++++ + 
  CCE27875.1  97 VVTGGCSGIGACIVRRLVERGVRVAVLDVQPKPPASGTDDDFkdpdalvRYYQCDITSPASVAEAADA 164
                 8*********************************99999999******************99998775 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   4.6e-05      0.14     107     187 ..     186     263 ..     173     282 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.6e-05
     DUF1776 107 pietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrp 187
                 pi ++p + +++++  + ls + ++q++lp++ s    +   i+  +s+ s + lp  a  +    +  ++ e+L+ el++
  CCE27875.1 186 PILEMPADVLQKVFAVNTLSHWTLVQQFLPHMIS---LNKGHIMTVASMASFIALPKGADYSASKASALSFHESLALELKH 263
                 8899*****************************9...44555667778888888888777777777777778888777772 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2480.21
//
Query:       CCE27876.1  [L=360]
Description: uncharacterized protein CPUR_01350 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-22   79.1  11.2    3.7e-22   79.1  11.2    2.1  2  FA_hydroxylase  Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.4     0.049   8.8e+02      48      79 ..      83     107 ..      42     134 .. 0.57
   2 !   79.1  11.2   2.1e-26   3.7e-22       3     133 .]     191     337 ..     189     337 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.049
  FA_hydroxylase  48 hplealllallllllllllgplsalllvlvla 79 
                     h l a+++++++        ++ a+ +++vl 
      CCE27876.1  83 HQLFAWITGWTIS-------TPFAFPFYMVLF 107
                     2222222222222.......222233322222 PP

  == domain 2  score: 79.1 bits;  conditional E-value: 2.1e-26
  FA_hydroxylase   3 lallledfveYwvHrllHrvkllwrrlHkvHHsseapta.laalrah...plealllallllllllllg...plsalllvlvlaallelliHsg. 89 
                     l+ ++ df++Y++Hr++H+v++lwr +H++HH +++p++ l+a++     +++++++ +l+++ ++++g    +  ++++  +  ++e+++Hsg 
      CCE27876.1 191 LYSIVLDFWFYLYHRAMHDVPFLWR-FHRTHHLTKHPNPlLSAYADEeqeFFDMVVVPFLTWATFWAAGmplGFYEWWMCQQYVVYTEVWGHSGv 284
                     6889*********************.***********9965665555111455555555555555666674555557777777888888*****9 PP

  FA_hydroxylase  90 .....lhvslgwllerl..latpraHrlHHskneeg..nfgvllslwDrlfgT 133
                             +l+wlle l      + H++HH++  ++  n+g+ +++wD++fgT
      CCE27876.1 285 rvhlvAPSTLSWLLESLdmELCVEDHDMHHRRGWRKsrNYGKQTRVWDKVFGT 337
                     87776556777777444448899********9885568**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2686.52
//
Query:       CCE27877.1  [L=631]
Description: uncharacterized protein CPUR_01351 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-09   35.0   0.1    5.8e-08   32.5   0.0    2.4  2  F-box-like  F-box-like
     0.0034   17.2   1.1      0.012   15.5   0.0    2.6  3  F-box       F-box domain
  ------ inclusion threshold ------
      0.012   16.2   0.0      0.085   13.5   0.0    2.5  2  Ank_2       Ankyrin repeats (3 copies)
      0.016   15.7   0.3       0.79   10.5   0.0    3.7  4  Ank_3       Ankyrin repeat
      0.032   14.8   0.1       0.32   11.6   0.0    2.7  3  Ank_4       Ankyrin repeats (many copies)
        0.1   13.0   0.0        2.3    8.6   0.0    2.9  3  Ank_5       Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.9e-11   5.8e-08       4      44 ..       2      40 ..       1      41 [. 0.97
   2 ?   -1.9   0.0         1   3.1e+03      36      45 ..     493     502 ..     486     504 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.9e-11
  F-box-like  4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrr 44
                LP+E+ ++I +yLp+++L+ l ++C+ W++++  +p+L+ r
  CCE27877.1  2 LPNELKIDITDYLPLKSLALLGQTCKAWHQFV--EPELYAR 40
                9*******************************..99***86 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1
  F-box-like  36 ldtplLWrrl 45 
                 +++p+L++rl
  CCE27877.1 493 AHEPSLYTRL 502
                 4678****98 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.9e-06     0.012       6      37 ..       2      33 ..       1      34 [. 0.96
   2 ?   -3.0   0.0       2.4   7.3e+03      32      43 ..     231     242 ..     230     244 .. 0.80
   3 ?   -4.0   0.4       5.1   1.5e+04      31      39 ..     528     536 ..     528     537 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.9e-06
                S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHH CS
       F-box  6 LPsevlrhILerLplsdllalrrVSkgwrili 37
                LP+e+  +I  +Lpl++l  l +++k w++++
  CCE27877.1  2 LPNELKIDITDYLPLKSLALLGQTCKAWHQFV 33
                9****************************986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.4
                 HHHHHHTTHHHH CS
       F-box  32 gwrilidsdrlw 43 
                 +wr++ ds   +
  CCE27877.1 231 RWRSFFDSFGQH 242
                 8****9997665 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 5.1
                 HHHHHHHTT CS
       F-box  31 kgwrilids 39 
                 ++wr ++++
  CCE27877.1 528 WSWRMVVRR 536
                 89**99987 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.9e-05     0.085      48      81 ..      77     127 ..      37     129 .. 0.64
   2 ?   -2.1   0.0       2.1   6.2e+03      66      83 .]     573     590 ..     567     627 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.9e-05
       Ank_2  48 h.............ad....ndgrtpLhyAarsghleivklLlekgadinl 81 
                 +             +d    ++g t+LhyA   g+l++ + Ll  ga +n+
  CCE27877.1  77 KgkinaiqldvpqqQDggisYEGSTALHYALILGNLRLTEKLLSMGARFNV 127
                 0333333333333533556688******************99977998885 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.1
       Ank_2  66 leivklLlekgadinlkd 83 
                 +e +  L+ kg+di+ ++
  CCE27877.1 573 IEDISGLIRKGVDITSQN 590
                 466666666666666553 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00026      0.79       1      30 [.      98     126 ..      98     127 .. 0.91
   2 ?   -0.0   0.0      0.69   2.1e+03      18      30 ..     350     365 ..     338     366 .. 0.77
   3 ?   -4.2   0.0         6   1.8e+04      21      29 ..     579     586 ..     574     586 .. 0.83
   4 ?   -1.3   0.0       1.8   5.4e+03       4      23 ..     599     618 ..     597     622 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00026
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G t+Lh+A+  gnl + + Ll  +ga +n
  CCE27877.1  98 EGSTALHYALILGNLRLTEKLLS-MGARFN 126
                 599*******************9.999877 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.69
       Ank_3  18 vkfLle...nkgadvn 30 
                 vkfL++    +g+d+n
  CCE27877.1 350 VKFLIDffqSHGVDFN 365
                 7788887776899988 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 6
       Ank_3  21 Llenkgadv 29 
                 L++ kg+d+
  CCE27877.1 579 LIR-KGVDI 586
                 899.89997 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.8
       Ank_3   4 tpLhlAarsgnleivkfLle 23 
                  +L lA+   + ++++ +l+
  CCE27877.1 599 LLLSLACDRPDAPYLRIFLK 618
                 57899999999999888887 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.32       2      38 ..     100     135 ..      99     137 .. 0.86
   2 ?   -3.1   0.0       4.6   1.4e+04      17      29 ..     350     366 ..     350     368 .. 0.71
   3 ?   -1.5   0.0       1.4   4.2e+03      21      38 ..     580     596 ..     579     596 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGeta 38 
                 +taLhya i g+l+l + Ll+ ga  n      G  a
  CCE27877.1 100 STALHYALILGNLRLTEKLLSMGARFNVP-CLGGCRA 135
                 69**********************99987.5666655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.6
       Ank_4  17 vrlLl....ekgadina 29 
                 v++L+    ++g+d n 
  CCE27877.1 350 VKFLIdffqSHGVDFNS 366
                 57777666678999987 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.4
       Ank_4  21 lekgadinaqdnrsGeta 38 
                 + kg+di  q n sG+++
  CCE27877.1 580 IRKGVDITSQ-NLSGQNP 596
                 5589******.*999876 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00078       2.3      15      40 ..      98     123 ..      91     135 .. 0.83
   2 ?   -2.1   0.0       1.8   5.3e+03      28      53 ..     346     374 ..     345     377 .. 0.75
   3 ?    0.2   0.0      0.34     1e+03       3      37 ..     581     618 ..     579     627 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00078
       Ank_5  15 ggntpLhvAakygaadvvrlLlarga 40 
                 +g t+Lh+A   g++++ ++Ll +ga
  CCE27877.1  98 EGSTALHYALILGNLRLTEKLLSMGA 123
                 688*******************4444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.8
       Ank_5  28 aadvvrlLl....argadlnltdsrGltal 53 
                 a++ v++L+     +g+d n  ++r ++++
  CCE27877.1 346 ALSDVKFLIdffqSHGVDFNSFNFR-SSPV 374
                 5667888887778899999999998.5555 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.34
       Ank_5   3 ehgpadvnrldgggn....tpLhvAakygaadvvrlLla 37 
                 ++g +d+  ++  g+    + L +A+ +  a+ +r++l+
  CCE27877.1 581 RKG-VDITSQNLSGQnpreLLLSLACDRPDAPYLRIFLK 618
                 555.66666666666555577888888888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4834.42
//
Query:       CCE27878.1  [L=417]
Description: uncharacterized protein CPUR_01352 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-17   63.9   0.2    3.4e-17   62.7   0.2    1.4  1  FAD_binding_3  FAD binding domain
    2.5e-07   30.2   0.1     0.0098   15.1   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00036   21.0   0.0     0.0015   19.1   0.0    2.0  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0013   18.4   0.1      0.038   13.6   0.1    2.3  2  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.033   14.4   0.1      0.084   13.1   0.1    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
       0.17   11.2   0.0       0.27   10.5   0.0    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.2   1.1e-20   3.4e-17       3     316 ..      10     332 ..       8     340 .. 0.77

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 1.1e-20
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE..CCCC.....CEEEEEHH CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne..lsdt.....pkaradle 91 
                     VlI GaG aG +la  L++ G ++++ve+ s+    ++   + ++ +e  + +Gl  +++++ + + + ++++ ++  +        +  + + +
     CCE27878.1  10 RVLISGAGVAGPSLAFWLTRLGHSCTIVERSSQLRASGQQIDIRTQGIEAADRMGLLGELRKMVVDEGGLQFVNAQSkpI--AtfpkvEAQPGQKK 103
                    69*************************************************************97777766666555552..04444444444444 PP

                    CHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGG.EEEEEEEEEEE CS
  FAD_binding_3  92 lesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgie.fegeetvyeag 186
                     +++ ++ + +   ++ ++L+++ +++ ++  f++ v++++++ +gv+ ++ d et +      + lv+aDG  S++r+ l  +  ++ + + ++g
     CCE27878.1 104 SQQGFSSEYEMMRGDVCQLLYDK-TRQSTEYVFGKHVTAFQNEANGVQVTLSDGETKKY-----DMLVAADGQSSRTRRLLLRDeDPSVDYSRDLG 193
                    57888888889999*********.9999*************************987777.....99************999866333333333455 PP

                    EEEEEEEC.-SCCCTTC...CEEEEECCTTEE...EEEECCETEEEEEEEEECCE-GGGS.CCCHHHHHHHHHHHHHHTTSS...CEE..EEEEEE CS
  FAD_binding_3 187 vldvlfda.dlsdivep...lvlilsaesrgv...mviPlentlerfyvqvearaekeer.sekfteeevkarlreivgekt...ldv..eieevs 269
                    +  + f+  +l+d   +    ++ l++  r++      P++  +     ++ +++ k+ + ++   ++ + a+l + +g++    +++  + +++ 
     CCE27878.1 194 LYVAFFSIpRLPD---DknmATFCLAPGRRIIasrFHSPTQG-QAYLATMAHLDQLKAAQgQDVAAQKALFAELFRGTGWQSerfIEAmmQCDDFY 285
                    5555555555554...455599999*****994433334444.33334444444444444266666777888888888876422233334888999 PP

                    EEEEEEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHH CS
  FAD_binding_3 270 awtvaqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLaw 316
                       + q  ++ ++kgrv l GDA  + +P++G+G  +a   a+ La 
     CCE27878.1 286 YQSMTQIRTKIWSKGRVVLLGDAGYAPTPMTGMGTSLAFVGAHVLAG 332
                    9999999****************************999999998875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.3e-06    0.0098     138     185 ..       4      52 ..       2      85 .. 0.79
   2 !   12.9   0.0   1.6e-05     0.049     196     242 ..     129     175 ..     114     187 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.3e-06
                  CSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Pyr_redox_2 138 lkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll.raldkel 185
                  l+ +p r+++ G+G+ G  lA  l++lg+  t+ve+ ++l  ++ + ++
   CCE27878.1   4 LQTKPLRVLISGAGVAGPSLAFWLTRLGHSCTIVERSSQLRaSGQQIDI 52 
                  5677889*******************************99644444444 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.6e-05
                  TTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 196 eGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpste 242
                  +  e ++g+ v++++++ + ++v+l+dge+ ++d++v a G + +t+
   CCE27878.1 129 QSTEYVFGKHVTAFQNEANGVQVTLSDGETKKYDMLVAADGQSSRTR 175
                  56788999*******99999*********************998886 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     5e-07    0.0015       1      41 [.      10      51 ..      10      64 .. 0.86
   2 ?   -1.5   0.0       1.3   3.9e+03      55      80 ..     131     155 ..     117     156 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5e-07
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHH CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.rllDee 41
                +v++ G+G+ g  lA  l++lg++ t+vers++l+ ++   +
  CCE27878.1 10 RVLISGAGVAGPSLAFWLTRLGHSCTIVERSSQLRaSGQQID 51
                799*******************************96444444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
                 EEEECSEEEEEEEEETTSEEEEEEET CS
   Pyr_redox  55 ievllntkveeiegsedgvesvklkd 80 
                  e ++++ v++++ +++gv+ v+l+d
  CCE27878.1 131 TEYVFGKHVTAFQNEANGVQ-VTLSD 155
                 56677888888888888754.77765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   1.3e-05     0.038       2      38 ..      11      47 ..      10      73 .. 0.87
   2 ?    2.7   0.0     0.025        75     148     217 ..     119     186 ..      96     270 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGG CS
         DAO  2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSg 38
                v+i G+G++G s A++L+r g   t++e+++++   aSg
  CCE27878.1 11 VLISGAGVAGPSLAFWLTRLGhsCTIVERSSQLR--ASG 47
                8999*************99999*******97765..444 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHHHH.HTT.CTTTSEE CS
         DAO 148 ltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsdll.gll.keldlpi 217
                 +++ l+++ ++   e ++g  vt++++e   + gv++t + ge++++d +V a G +s+ + +ll ++ d+ +
  CCE27878.1 119 VCQLLYDKTRQS-TEYVFGKHVTAFQNE---ANGVQVTLSdGETKKYDMLVAADG-QSSRTrRLLlRDEDPSV 186
                 566677776655.789999999999776...444442334477655455666666.44445344444444444 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.8e-05     0.084       3      31 ..      15      43 ..      13      65 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.8e-05
                   --SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8  3 GaGlsGlvaAylLakagfdvlllekrdrl 31
                   GaG++G ++A  L++ g++++++e++++l
     CCE27878.1 15 GAGVAGPSLAFWLTRLGHSCTIVERSSQL 43
                   9************************9986 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     9e-05      0.27      26      66 ..       6      46 ..       1      92 [. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9e-05
                 B---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHH CS
  AlaDh_PNT_C 26 vepakvlviGgGvaGlqAiatakglgakVtvlDvrparleq 66
                 ++p +vl+ G+GvaG + +   ++lg + t+++ +++ +  
   CCE27878.1  6 TKPLRVLISGAGVAGPSLAFWLTRLGHSCTIVERSSQLRAS 46
                 6799***************************9988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3128.87
//
Query:       CCE27879.1  [L=116]
Description: uncharacterized protein CPUR_01353 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 881.95
//
Query:       CCE27880.1  [L=159]
Description: uncharacterized protein CPUR_01354 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1288.92
//
Query:       CCE27881.1  [L=442]
Description: related to exopolygalacturonase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-51  173.8   5.8    6.6e-51  173.3   5.8    1.2  1  Glyco_hydro_28  Glycosyl hydrolases family 28


Domain annotation for each model (and alignments):
>> Glyco_hydro_28  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.3   5.8   3.7e-55   6.6e-51      23     322 ..     111     434 ..      97     440 .. 0.89

  Alignments for each domain:
  == domain 1  score: 173.3 bits;  conditional E-value: 3.7e-55
  Glyco_hydro_28  23 lkgplksgttvtlegtttakvkekngkddivisgekitvlgisGkgtidGqGqawwdgkgkkkkegkkkpkflvikkvknskiknlniknspvfh 117
                     ++g++  + +v+  ++ ++k+  +n     ++ g+++++ g  G+g+idG+Gqaw d  +k  ++  + p ++v++ ++  ++++l+++n p+  
      CCE27881.1 111 ISGSVSLSDDVEYWASHSMKYAYQNASAAWRFGGKDVNIYG-GGQGVIDGNGQAWYDAFAK--NSMLQRPVLFVLDGLDGGSVTGLKMQNPPFWF 202
                     55666666777777888888888888877788899998877.788*************998..99999************************999 PP

  Glyco_hydro_28 118 fsvesgkdltisditidasagd....hNtDgidvgsskgvtisntnikngDDciainsgsknisitnvtcggGHGlSiGSvggrsd..ntVknvt 206
                       + +++d+ +sdi ++ ++++    +NtDg d  +sk+v ++ +++kngDDc++ ++ s +i ++n  c+g HG+S+GS+g++    + V+nv 
      CCE27881.1 203 NLIANSSDILVSDINLTVKSTSnstaKNTDGWDTYRSKNVVLQSSTVKNGDDCVSFKPNSTDIVVQNLACDGSHGISVGSLGQYMGevDIVENVY 297
                     999**********9998888888899********************************************************98665689***** PP

  Glyco_hydro_28 207 vkdskvknsenGvRIKtik.............gatgtvsnvkyeniklknvaypividqdYenke..ptgkptsgvkisdvtfknvtgtvks... 283
                     v +  +kn++ G RIK +              g +g v nv+y     ++    i + q Y nk+   + + +s++ +sd+tfkn  gt+++   
      CCE27881.1 298 VYNISMKNASDGARIKVWPssytpfqpslsggGGSGYVKNVTYDTFYNEGNDWAIEVTQCYGNKNltLCSQHPSNMILSDITFKNFWGTTSKknd 392
                     ****************9987778888888888889***************99*********997722577889**************99987333 PP

  Glyco_hydro_28 284 aeavkllcekgskcsdvtmsdvkitg.g..kstskcknvksk 322
                     ++   l c++ s+c ++  ++++++  +  k ++ c nv+ +
      CCE27881.1 393 PKVGTLVCSDPSRCHNIRAQNINVQPpSskKAKWVCDNVNRE 434
                     4456799*****************98656788999****965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3354.75
//
Query:       CCE27882.1  [L=486]
Description: uncharacterized protein CPUR_01356 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-22   81.0   5.6    1.2e-22   81.0   5.6    2.0  2  Glyco_hydr_30_2  O-Glycosyl hydrolase family 30


Domain annotation for each model (and alignments):
>> Glyco_hydr_30_2  O-Glycosyl hydrolase family 30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   5.6   6.9e-27   1.2e-22       3     231 ..      24     264 ..      22     287 .. 0.83
   2 ?   -0.1   0.1      0.03   5.4e+02     333     356 ..     325     348 ..     309     352 .. 0.85

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 6.9e-27
                      EEEEEEEEEEEE--EEEEE-TTTHHHHHHHS-HHHHHHHHHHHH---B-T.TS-B.-S---S-EEEE---STTTTTTSS--S.....SSTT--- CS
  Glyco_hydr_30_2   3 kisidlqeeyqtidsfgasDaWsakfvGkkapeekknkiadlLfsketde.nGnP.kGigLslWrfniGaGsteqgeaseit.....dewrree 89 
                      + +id++++y t + +g s aW ak  G       ++ +ad++f + t++ +G+   G+g+++ r+n Ga s    + ++i+        r+ e
       CCE27882.1  24 QTTIDPSQKYGTWEGWGVSLAWWAKAFG------DRDDLADIFFTTKTHQfQGRQlPGLGFTIARYNAGATSSRTYNGESIRlspniKPSRQME 111
                      5689************************......7999******9998764786526**************98766655554212112357778 PP

                      -SB....-...TTS-B-TTSSHHHHHHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SS.S-SS-TT-HHHHHHHHHHHHHHH.HCTT--E CS
  Glyco_hydr_30_2  90 cfl....e...adGkydwtkqeGqqWflkaakerGveefLgfsnsaPvqmtkngkavstkek.elnlkadkiddfadflvkvadkf.rkegvkf 174
                       f     +   a G++dw+  + q+ +l+ ak+rG + f  fsns+   m  n +  ++++  + nl++ ++ ++a +l+++ ++  r+ g++f
       CCE27882.1 112 GFWldwaSadpASGSWDWSVDAKQRLMLQKAKTRGANIFELFSNSPMWWMCSNHNPSGNDKAsRDNLQSWNYGQHAVYLATIEEHArRSWGIEF 205
                      8853433233357******************************************9999998799*********************7789**** PP

                      EEEE--S-T...-GGG--.SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGG CS
  Glyco_hydr_30_2 175 dylsPvneP...qWdwgegsqeGtpatnediaalvrkLseklsekklktkivlgeagqld 231
                      + + P+neP    W  ++g+qeG++ +   + ++v  L++++s++++ + i+ ++ ++ d
       CCE27882.1 206 QSVEPFNEPstaYW-HSKGTQEGSHFEIRTMDSVVALLKTEMSKRGSRAWIAASDETSYD 264
                      *********75333.3568*****************************999988766655 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.03
                      HHHHHHHHHHTS--SEEEEEESEE CS
  Glyco_hydr_30_2 333 vakvihnDLtlanasaWqWWlavs 356
                      +a+ +  D+t+   +aW +W a++
       CCE27882.1 325 MAQNMLLDFTYLHPTAWVYWQAID 348
                      677778899***********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3873.38
//
Query:       CCE27883.1  [L=115]
Description: uncharacterized protein CPUR_01357 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 865.70
//
Query:       CCE27884.1  [L=481]
Description: uncharacterized protein CPUR_01358 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-57  195.5   0.0    1.4e-45  155.8   0.0    2.1  2  UPF0052   Uncharacterised protein family UPF0052


Domain annotation for each model (and alignments):
>> UPF0052  Uncharacterised protein family UPF0052
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.2   8.3e-14   1.5e-09       1      47 [.      10      60 ..      10      62 .. 0.96
   2 !  155.8   0.0   7.9e-50   1.4e-45      41     256 ..      85     417 ..      77     438 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 8.3e-14
                EEEEE-CHHHHHHHHHHCCSS....CEEEEEE-----SHHHHHHHHHHTS- CS
     UPF0052  1 vvvlgGGtGlskllrglkevt....aeltavvtvaDdggssGelrrelgll 47
                +vv++GG+++++l++++++++      l++v++++D+ggs++e++r++g++
  CCE27884.1 10 IVVFSGGSAANNLVDVFERLReangTTLSYVIPISDNGGSTSEIIRVFGGP 60
                8********************999999*********************997 PP

  == domain 2  score: 155.8 bits;  conditional E-value: 7.9e-50
                 HHHHTS---HHHHHHHHHH--S-C........HHHHHCH-B-SS.....SSSST............................................. CS
     UPF0052  41 rrelgllaigDirnvlvalidder........lleeLfqyRfkg.....dgdla............................................. 81 
                  r+ + ++igD+r++lv+li d +        +++ +f++R++          a                                             
  CCE27884.1  85 TRKSPAPGIGDVRSRLVRLIPDGNtnngpeivAIKHFFNHRLAPsydaaR---Aewldmldathalwtdisspkrelirsylncfnleaikrlrpssrf 180
                 6778899************999888999**************99665550...2555555555558899999999999999999999999999999999 PP

                 ...T-BHHHHHHHHHHHHHS-HHHHHHHHHHHTT-.SS.EEEES..-SS--EEEEEETTS-EEESTTTGG............................. CS
     UPF0052  82 ...ghslgnllLaalaeltgsleeaiealskilkv.rg.rvlPa..tddpvelsaeledGeeitgeskis............................. 144
                    g+s+gnl+L++   +tgs+e+ai++ls++++v ++  vlPa  t+  +++ a l+dG++itg++ is                             
  CCE27884.1 181 dfsGASIGNLFLTGARLVTGSFEAAIYLLSSLCAVpDHiGVLPAinTNFAHHIAAGLQDGTVITGQNDIShpscptaeeydqiedanlpgslpalrrpa 279
                 999***********555569***************75569*****************************9999************************** PP

                 .......GG-S....-EEE.EEEESTT--....--HHHHHHHHH-SEEEE-SS-IIIIIHHHHTSCCHHHHH.HH-SSEEEEE--SB--TTTST....T CS
     UPF0052 145 .......eark.lkapikr.vflepegae....aapevleaikeAdlivlgpGslytSiiPiLlvpgiaeal.reskakkvlvsnimtqkGetd....g 225
                        e ++ l+++i+r ++++p+g+e    a+p+v++a+++A  i++++Gsl+tS+iP+L+++g+++a+ + s ++kvl++n +t++ et      
  CCE27884.1 280 lafskarEDEEdLPSRIHRvWYINPYGQEiripANPRVMDALQRATTIIYSIGSLFTSLIPNLVLRGVGDAIaSPSIRQKVLLLNGTTDR-ETGpsddP 377
                 ****997556679***************88888***************************************999************943.33234479 PP

                 -BHHHHHHHHHHCH-.........SS....S-SEEEEE-S CS
     UPF0052 226 fsvsdhvkaieravg.........kgvakayvdavlvnts 256
                 +s+ d+v ai +a+          +++   yv++v++ ++
  CCE27884.1 378 LSALDFVGAIATACAdsrgwpppdENQYAVYVTHVIYLEG 417
                 ***************9999999987888889****96444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3720.91
//
Query:       CCE27885.1  [L=478]
Description: related to QRI7-similarity to H.influenzae sialoglycoprotease (gcp) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-47  162.9   0.0    6.6e-24   85.0   0.0    3.8  3  Peptidase_M22  Glycoprotease family


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   4.5e-05      0.81      15      41 ..      70      96 ..      60     100 .. 0.89
   2 !   62.8   0.1   2.2e-21   3.9e-17      50     106 ..     129     187 ..     116     191 .. 0.88
   3 !   85.0   0.0   3.7e-28   6.6e-24     103     271 .]     208     437 ..     195     437 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 4.5e-05
                   ...SSSSHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M22 15 akyGGvvPelasraHserllplieeal 41
                   +++ Gv+P +   aH+ +l pl+++al
     CCE27885.1 70 RAFKGVHPIISNDAHQSALAPLVQRAL 96
                   5789*********************98 PP

  == domain 2  score: 62.8 bits;  conditional E-value: 2.2e-21
                    GEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHCCHCTSEC..SSC CS
  Peptidase_M22  50 dldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahalaarleeke..efP 106
                      d + vt+gPG  t L vG+++Akgla+a+++PlvgV+h++ahal++rl ++   ++P
     CCE27885.1 129 RPDFVSVTRGPGILTNLSVGINMAKGLAVAWDVPLVGVHHMQAHALTPRLVAALqqQQP 187
                    56899********************************************9944444666 PP

  == domain 3  score: 85.0 bits;  conditional E-value: 3.7e-28
                    C.SSC.EEEEESSSTEEEEEECT.TEEEEEEEESSSEHHHHHHHHHHHHT..S...........................SCCHHHHHHHCTC... CS
  Peptidase_M22 103 e.efP.vvllvsGghtqvylvke.gryeilgetlddaagealdkvarllglpy...........................pggpkieklakeg... 165
                      +fP + llvsGghtq++ + +  ++ +l++t+d+a+g+ ld++ar++ lp                            p+ p+  + ++ +   
     CCE27885.1 208 SpQFPfLTLLVSGGHTQLVHSASlTEHHVLATTIDNAIGNLLDQTARVI-LPPpilasspdvmygrllesfafdtatathPEPPNYHEHFQPAlsr 302
                    159**********************************************.7777999999999999999999999999887777666666655544 PP

                    .S..........EET.........TEEE.CHHHHHHHHHHST.T......HHHHHHHHHHHHHHHHHHHHHHHHHH......CTBSEEEEESGGGG CS
  Peptidase_M22 166 .kk...iefprplkg.........ldfsfsGlktavlkelek.e......vedlaasfqeavvdhlvekteralkl......pkakelvilGGvaa 235
                     ++   +  p+p +          l f fs l+ +v++ +e+        ++ la ++ +a+++hl++++  al++        a++lv++GGva+
     CCE27885.1 303 mDEmtpVPTPYPWTLslpfrdsrrLAFCFSSLHMQVHRIAEHiPpddipqRRCLARHILRAAFQHLASRLVLALQDipglsrDVARTLVVSGGVAS 398
                    4223345566776669********99**************5552568999999*********************99****99999*********** PP

                    XHHHHHCHCCHHHH...TTSEEEXXXHHHHSSXCHHHHH CS
  Peptidase_M22 236 nkrLrealeeeaee...lglkliiPplkyctdnaamiaw 271
                    n+ L+  l+e  ++   +g+++++Pp ++ctdnaamiaw
     CCE27885.1 399 NQFLKHVLRETLSArgyPGVDILVPPVALCTDNAAMIAW 437
                    ***9997766544423477*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3248.25
//
Query:       CCE27886.1  [L=283]
Description: probable 20S core proteasome subunit PRE2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-46  158.1   0.3    2.1e-46  157.8   0.3    1.1  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.8   0.3   1.2e-50   2.1e-46       1     190 []      65     248 ..      65     248 .. 0.96

  Alignments for each domain:
  == domain 1  score: 157.8 bits;  conditional E-value: 1.2e-50
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 +++Gtt++++++++g+++a+d+ratags + +++tv+K+++i+  ++ ++aG aaD++++  ++ ++++l++lr++r+i+v      +a+k++a++ ++
  CCE27886.1  65 IAHGTTTLAFRFQGGIIVATDSRATAGSWI-ASQTVKKVIEINSVLLGTMAGGAADCQYWLAWLGMQCRLHELRHKRRISVA-----AASKILANLVYR 157
                 579***************************.7777***********************************************.....9********999 PP

                 TTTTTS.EEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 100 grrpfg.vslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                 ++++ + ++++ agv +e+gp Ly++d +G+ ++  +++++Gsg+++a+++l++eyk +l++e+a++l ++++ +a++rd++sg+ i+++++
  CCE27886.1 158 YKNMGLsMGTMCAGVTKEEGPALYYVDSDGTRLAG-NMFCVGSGQTFAYGVLDAEYKFELSVEDALQLGRRSILAATHRDAYSGGFINLYHV 248
                 98776449***************************.7**************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1930.32
//
Query:       CCE27887.1  [L=1507]
Description: probable transmembrane protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-84  277.7   0.0    1.1e-22   80.3   0.0    5.4  5  C2        C2 domain
    9.1e-05   22.0   0.0    0.00016   21.2   0.0    1.4  1  SMP_LBD   Synaptotagmin-like mitochondrial-lipid-binding doma
     0.0095   16.5   0.0      0.054   14.1   0.0    2.4  2  DUF4429   Domain of unknown function (DUF4429)


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   1.8e-21   1.1e-17       2      96 ..     457     552 ..     456     558 .. 0.92
   2 !   51.4   0.0   1.7e-17     1e-13       1     103 []     599     704 ..     599     704 .. 0.89
   3 !   59.7   0.0   4.6e-20   2.8e-16       3      86 ..     739     821 ..     737     836 .. 0.92
   4 !   80.3   0.0   1.8e-26   1.1e-22       1      92 [.    1095    1186 ..    1095    1197 .. 0.93
   5 !   15.0   0.0   3.9e-06     0.023       2      90 ..    1361    1446 ..    1360    1456 .. 0.81

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 1.8e-21
                 EEEEEEEEEESSSSSST.TSSCEEEEEEEE.ECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHH CS
          C2   2 klevtvieAknLpnkdk.kgssdpyvkvsl.dgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsgee 96 
                  l +t + A++L+n d  kgs dpy+++s+ ++++ a+T++i+++ nP+Wne+ ++ v+   +++L ++Vfd++ ++k++ +G+++++l++l++ ++
  CCE27887.1 457 VLALTLHGAQGLKNSDNfKGSLDPYACISFsRRQELARTKTIDDNANPRWNETHYLIVTS-FSDTLDIQVFDKNEFRKSKELGVATFRLEDLEELHV 552
                 6899********999888************999999******9999**************.*****************************9776555 PP

  == domain 2  score: 51.4 bits;  conditional E-value: 1.7e-17
                 TEEEEEEEEEESS.SSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEE.EEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHH.HHTTHH CS
          C2   1 gklevtvieAknL.pnkdkkgssdpyvkvsldgkqkakTrviknslnPvW.nekftfevaeleeakLeveVfdndrlskddfiGkveiplst.llsgee 96 
                 g+l++tv +Ak+L   k   g  +py+++ l+gkq+++T++ k++ nP+W n + ++ +++  +akL v+V+d++ l +d  +Gk +i+l++ ++  ++
  CCE27887.1 599 GILRFTVEQAKDLdGTKSLVGLLNPYAVMFLNGKQVHRTKILKRTNNPIWdNGSQEILITDRRKAKLGVTVKDDRGLISDPDLGKYQIKLDEmMDCMAQ 697
                 689**********444455999******************9999989***668889999999***********999988888**********8777888 PP

                 HHEEEEH CS
          C2  97 aegwypl 103
                  ++wy+l
  CCE27887.1 698 GKEWYQL 704
                 8899976 PP

  == domain 3  score: 59.7 bits;  conditional E-value: 4.6e-20
                 EEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEE CS
          C2   3 levtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkvei 86 
                 ++++  +A++L n + +g+sdpyv+v l+g  ka+T + kn lnP+W+e ++++v+  ++++L +eV+d +++++d  +G ve+
  CCE27887.1 739 MRLHFQKATDLRNFESFGKSDPYVRVLLSGIDKARTVTFKNDLNPEWDEVLYVPVHS-PRDRLSLEVMDAEKVGRDRSLGLVEL 821
                 678899********9******************************************.**************9*******9987 PP

  == domain 4  score: 80.3 bits;  conditional E-value: 1.8e-26
                  TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHH CS
          C2    1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstll 92  
                  g+l+v v+++ +Lp  d +g+sdpy+k +l+g++++kT+vik++lnP+Wne f+++v+   +ak  v V+d+d   k df+G ++i+l+ ++
  CCE27887.1 1095 GNLRVDVLNGIELPSADRNGKSDPYCKFELNGQEVYKTKVIKKTLNPTWNEFFEVSVPSRTAAKFNVNVYDYDFADKPDFLGAATINLDIVE 1186
                  689************************************************************************************98654 PP

  == domain 5  score: 15.0 bits;  conditional E-value: 3.9e-06
                  EEEEEEEEEESSSSSSTTSSCEEEEEEEE...ECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHH CS
          C2    2 klevtvieAknLpnkdkkgssdpyvkvsl...dgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplst 90  
                  + +vt++ A + p+      +d ++++s    ++k+ +kT+  k+s + +W+ + tf+++ +++++L++e + ++ l+++d +G+    +++
  CCE27887.1 1361 TATVTIVGASGFPPS-----TDLFIVISQlspKEKVLGKTKHFKSS-SSQWSFDETFKITCSPDTQLKIEAKGDHFLGSSDELGEHIYFVDD 1446
                  668999******999.....9**98888889999999****44555.9999766666666666**********999999999**98877776 PP

>> SMP_LBD  Synaptotagmin-like mitochondrial-lipid-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.6e-08   0.00016       1     128 [.     238     369 ..     238     399 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.6e-08
                 --B--HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTT-G.GGTTEEEEEEE--SS--EEEEEEEE-TT--TTSEEEEEEEEEEEEEEEEE...EECCC CS
     SMP_LBD   1 dteraewlnktvkhmwpficqfieklfretiepavrgant.hlstfsftkvdvgqqplringvkvytenvdkrqiildlqisfvgnceidl...eikry 95 
                 d e  ew+n  + ++wp+   ++ + + ++++  +  a + +l ++ +    +g +p r++ vk y +  d   +i+d + sf  n   dl   ++k  
  CCE27887.1 238 DNESLEWINSFLVKFWPIYQPVLAQTIINSVDQVLSSATPaFLDSLKLKTFTLGSKPPRMEHVKTYPKTEDD-IVIMDWKFSFTPNDTADLtsrQVKNK 335
                 67899*************9999**********9999987527999*********************988775.799**************933335666 PP

                 TEEEEEEEEEEEEEEE.EEE--B-SSTTSB-EEE CS
     SMP_LBD  96 fcragvksiqihgtmr.vilepligdmplvgals 128
                 +    v  i+i  +m    l+ ++ dm + g + 
  CCE27887.1 336 INPKVVLEIRIGKAMIsKGLDIIVEDMSFSGIMR 369
                 6666788888877775145888888998888765 PP

>> DUF4429  Domain of unknown function (DUF4429)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         3   1.8e+04      47      78 ..     455     483 ..     449     493 .. 0.73
   2 !   14.1   0.0   9.1e-06     0.054       8      90 ..     521     637 ..     516     643 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3
     DUF4429  47 eGyLRlvlragaeplaeaaggklrpdqDpaav 78 
                  G+L l+l+ ga+ l+   +++++ + Dp+a 
  CCE27887.1 455 VGVLALTLH-GAQGLK--NSDNFKGSLDPYAC 483
                 589999999.888887..45888889999886 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 9.1e-06
     DUF4429   8 vsirwswtgassakwkaGdqrfpldelagVewrspeslg......................................eGyLRlvlragaeplaeaaggk 68 
                 + i+ + + + ++ +++G  +f+l++l++ + r++e+l+                                      +G LR++++ +a++l    +++
  CCE27887.1 521 LDIQVFDKNEFRKSKELGVATFRLEDLEELHVRENERLEvigdgkargvvscdlrffpvlesqtlpdgkvepppdsnQGILRFTVE-QAKDLD--GTKS 616
                 6667777766667779*********************************************************************9.555555..3577 PP

     DUF4429  69 lrpdqDpaavvfglgyglvhea 90 
                 l     p+av+f    ++vh +
  CCE27887.1 617 LVGLLNPYAVMFLN-GKQVHRT 637
                 88888999997766.5566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 9419.98
//
Query:       CCE27888.1  [L=572]
Description: related to PIB1-phosphatidylinositol(3)-phosphate binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-21   75.0   1.4    3.9e-21   75.0   1.4    3.1  4  FYVE           FYVE zinc finger
    4.4e-07   30.1  24.5    4.8e-07   30.0   4.8    3.4  3  zf-RING_2      Ring finger domain
    0.00078   19.1   4.5    0.00078   19.1   4.5    2.7  3  zf-RING_11     RING-like zinc finger
    0.00086   19.1   3.8    0.00086   19.1   3.8    3.5  3  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
       0.01   16.1   2.2       0.01   16.1   2.2    2.6  3  zf-RING-like   RING-like domain
      0.015   15.3   5.5      0.015   15.3   5.5    3.5  3  zf-RING_UBOX   RING-type zinc-finger
       0.21   11.5   1.1       0.78    9.6   0.1    2.2  2  Rad50_zn_hook  Rad50 zinc hook motif
       0.25   11.6   8.7      0.077   13.2   1.9    2.4  2  FYVE_2         FYVE-type zinc finger
       0.39   10.9  12.1       0.48   10.6   3.4    2.9  3  zf-piccolo     Piccolo Zn-finger
       0.85    9.7   7.9        4.8    7.3   4.4    2.8  2  DZR            Double zinc ribbon


Domain annotation for each model (and alignments):
>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   1.4   2.2e-24   3.9e-21       2      64 ..     226     311 ..     225     315 .. 0.91
   2 ?   -3.7   0.1       7.8   1.4e+04       9      17 ..     452     460 ..     450     464 .. 0.70
   3 ?   -1.0   0.0       1.1   1.9e+03       6      26 ..     475     495 ..     471     496 .. 0.82
   4 ?   -0.9   2.4         1   1.9e+03      10      21 ..     522     533 ..     514     554 .. 0.67

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 2.2e-24
                 ---...--SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EE.......................GGGTEEEEEEE-HHHHH CS
        FYVE   2 kwkddsevkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvall.......................ekeaeeksvrvCkeCla 64 
                 +w++d+ev+ C+iC+++Fs+++r+hhCr CG+vvC++Cs +++  +                       ++ +  ++vr+C+ C+ 
  CCE27888.1 226 RWQPDAEVTYCPICRAQFSFFIRKHHCRKCGRVVCAACSPHRIIIPhqyivrapgseivappipgyfesNNLSGGERVRLCNPCVP 311
                 8**************************************999988888999999999999999999887777778899******85 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.8
                 -SB-TTT-- CS
        FYVE   9 vkkCeiCak 17 
                  ++C+ C+ 
  CCE27888.1 452 EDECPVCHG 460
                 567888875 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.1
                 ..--SB-TTT--B--SSS--E CS
        FYVE   6 dsevkkCeiCakkFsllrrrh 26 
                 +++++ C + ++++   rrrh
  CCE27888.1 475 EAHINACVQSHSTYGSPRRRH 495
                 567889999999998889998 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1
                 SB-TTT--B--S CS
        FYVE  10 kkCeiCakkFsl 21 
                 ++C+iC ++F +
  CCE27888.1 522 AECTICLEEFVV 533
                 68999*999964 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.1     0.014        25       2      30 ..     235     264 ..     234     273 .. 0.76
   2 ?    2.0   0.1      0.15   2.7e+02       1       7 [.     453     459 ..     448     468 .. 0.67
   3 !   30.0   4.8   2.7e-10   4.8e-07       2      42 ..     523     564 ..     522     564 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.014
   zf-RING_2   2 eCpICleelssadsvlll.pCgHvfhreCl 30 
                  CpIC  ++s   + + + +Cg v +  C 
  CCE27888.1 235 YCPICRAQFSFFIRKHHCrKCGRVVCAACS 264
                 6****999966555444447*********7 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.15
   zf-RING_2   1 deCpICl 7  
                 deCp+C 
  CCE27888.1 453 DECPVCH 459
                 3555554 PP

  == domain 3  score: 30.0 bits;  conditional E-value: 2.7e-10
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssst.CPl 42 
                 eC+IClee+  +  + +l+C   fhr+C++ w+ +++  CP+
  CCE27888.1 523 ECTICLEEFVVGVPMARLECLCRFHRSCISAWFVNHPGrCPV 564
                 8*************99999*656*********7777766**6 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       2.7   4.9e+03       2       8 ..     236     242 ..     236     244 .. 0.77
   2 ?   -1.2   0.1         1   1.8e+03       1       8 [.     454     461 ..     454     463 .. 0.83
   3 !   19.1   4.5   4.4e-07   0.00078       1      29 []     523     551 ..     523     551 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.7
  zf-RING_11   2 CsICLee 8  
                 C IC  +
  CCE27888.1 236 CPICRAQ 242
                 9***665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1
  zf-RING_11   1 eCsICLee 8  
                 eC +C  e
  CCE27888.1 454 ECPVCHGE 461
                 8****776 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 4.4e-07
  zf-RING_11   1 eCsICLeefkpgqalfilpCsHtFHfkCI 29 
                 eC+ICLeef +g  +  l+C   FH  CI
  CCE27888.1 523 ECTICLEEFVVGVPMARLECLCRFHRSCI 551
                 9***************************9 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   7.4       1.2   2.2e+03       1      26 [.     235     263 ..     235     268 .. 0.71
   2 ?    2.6   0.2      0.07   1.3e+02      33      40 .]     451     458 ..     447     462 .. 0.79
   3 !   19.1   3.8   4.8e-07   0.00086       1      39 [.     523     564 ..     523     564 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.2
  zf-C3HC4_2   1 kCpiCldmlkdpsvvt...pCgHvfCqkC 26 
                 +CpiC + ++  ++     +Cg v C+ C
  CCE27888.1 235 YCPICRAQFSFFIRKHhcrKCGRVVCAAC 263
                 6****988875332224449999999999 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.07
  zf-C3HC4_2  33 ekneCPlC 40 
                 e++eCP+C
  CCE27888.1 451 EEDECPVC 458
                 67789988 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 4.8e-07
  zf-C3HC4_2   1 kCpiCldmlkdpsvvt..pCgHvfCqkCilrsLeekn.eCPl 39 
                 +C+iCl+++  ++ ++  +C  +f+++Ci  +  ++  +CP+
  CCE27888.1 523 ECTICLEEFVVGVPMArlECLCRFHRSCISAWFVNHPgRCPV 564
                 6********998888778**************999999***6 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.2   4.3        10   1.8e+04      40      43 .]     252     255 ..     236     266 .. 0.63
   2 ?   -3.1   0.3       5.9   1.1e+04      38      43 .]     453     458 ..     450     458 .. 0.78
   3 ?   16.1   2.2   5.7e-06      0.01       1      41 [.     524     563 ..     524     564 .. 0.95

  Alignments for each domain:
  == domain 1  score: -5.2 bits;  conditional E-value: 10
  zf-RING-like  40 CpkC 43 
                   C kC
    CCE27888.1 252 CRKC 255
                   3333 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.9
  zf-RING-like  38 kkCpkC 43 
                    +Cp C
    CCE27888.1 453 DECPVC 458
                   689999 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 5.7e-06
  zf-RING-like   1 CeaCkeivtqGvrCsnesCnvrlHvdCfqhyirthsskkCp 41 
                   C++C e  ++Gv  ++ +C +r+H  C+ + + +h   +Cp
    CCE27888.1 524 CTICLEEFVVGVPMARLECLCRFHRSCISAWFVNHPG-RCP 563
                   ********************************88888.998 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   7.5      0.25   4.4e+02       1      24 [.     236     263 ..     236     277 .. 0.83
   2 ?    0.6   0.2      0.32   5.7e+02       1      11 [.     455     463 ..     455     468 .. 0.81
   3 ?   15.3   5.5   8.2e-06     0.015       1      26 [.     524     554 ..     524     563 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.25
  zf-RING_UBOX   1 CpIClelft.....dPlvlpCGHtFCreC 24 
                   CpIC+ +f+     +    +CG + C  C
    CCE27888.1 236 CPICRAQFSffirkHHCR-KCGRVVCAAC 263
                   *********998863323.6******999 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.32
  zf-RING_UBOX   1 CpIClelftdP 11 
                   Cp+C  ++  P
    CCE27888.1 455 CPVCHGEL--P 463
                   ****9887..4 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 8.2e-06
  zf-RING_UBOX   1 CpIClelft..dPlv.lpCGHtFCreCl..w 26 
                   C+ICle+f    P+  l+C   F+r+C+  w
    CCE27888.1 524 CTICLEEFVvgVPMArLECLCRFHRSCIsaW 554
                   ********9999955579**********544 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.75   1.3e+03      22      29 ..     236     243 ..     231     244 .. 0.77
   2 ?    9.6   0.1   0.00044      0.78      15      30 ..     449     463 ..     448     466 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.75
                    -TTT--EE CS
  Rad50_zn_hook  22 CPlCgRel 29 
                    CP C   +
     CCE27888.1 236 CPICRAQF 243
                    ****9877 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00044
                    HTT-SEE-TTT--EE- CS
  Rad50_zn_hook  15 lkeakgcCPlCgReld 30 
                    ++e++  CP+C+ el+
     CCE27888.1 449 IAEED-ECPVCHGELP 463
                    56667.9*******98 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.9   4.3e-05     0.077      54      87 ..     233     265 ..     227     276 .. 0.88
   2 ?    1.7   0.7      0.16   2.8e+02      48      80 ..     515     547 ..     506     559 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.3e-05
      FYVE_2  54 ethCilCleefkllvnskrqCldCklnvCkkCsv 87 
                 +t C  C  +f +++  k++C +C   vC +Cs 
  CCE27888.1 233 VTYCPICRAQFSFFIR-KHHCRKCGRVVCAACSP 265
                 689**********996.578************95 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.16
      FYVE_2  48 nqaklgethCilCleefkllvnskrqCldCkln 80 
                 ++ ++ + +C  Cleef + v   r    C+++
  CCE27888.1 515 EKDCVDDAECTICLEEFVVGVPMARLECLCRFH 547
                 56788999*********9988887765567664 PP

>> zf-piccolo  Piccolo Zn-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.4   0.00027      0.48       2      35 ..     235     264 ..     234     269 .. 0.87
   2 ?    5.6   0.1    0.0096        17       3      25 ..     455     483 ..     453     489 .. 0.63
   3 ?   -3.8   0.2       8.2   1.5e+04       3       7 ..     524     528 ..     516     534 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
  zf-piccolo   2 lCplCktelnvgskeppnyntCteCkkqvCnlCG 35 
                  Cp+C+++ ++        ++C +C ++vC +C 
  CCE27888.1 235 YCPICRAQFSFF----IRKHHCRKCGRVVCAACS 264
                 7********998....55679************5 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0096
  zf-piccolo   3 CplCktelnvgs.kep.....pnyntCte 25 
                 Cp+C+ el + s  +      +  n+C +
  CCE27888.1 455 CPVCHGELPARSlPDFeslreAHINACVQ 483
                 ********988643323333355555555 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 8.2
  zf-piccolo   3 CplCk 7  
                 C +C 
  CCE27888.1 524 CTICL 528
                 55554 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.4    0.0027       4.8      11      39 ..     232     260 ..     226     264 .. 0.81
   2 ?    2.3   0.1     0.096   1.7e+02      27      40 ..     448     464 ..     432     467 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0027
         DZR  11 darfCseCgtklkavaaedrCpsCgekvd 39 
                 +  +C+ C+++ +   ++++C +Cg+ v 
  CCE27888.1 232 EVTYCPICRAQFSFFIRKHHCRKCGRVVC 260
                 556********988888********9875 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.096
         DZR  27 a...edrCpsCgekvdp 40 
                 +   ed Cp C+ ++++
  CCE27888.1 448 HiaeEDECPVCHGELPA 464
                 25558999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3934.75
//
Query:       CCE27889.1  [L=997]
Description: probable transcription factor Pig1p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-14   52.5   1.5      1e-13   51.0   0.2    2.1  2  Fungal_trans  Fungal specific transcription factor domain
    4.9e-11   42.4   8.3    2.8e-05   24.3   1.9    2.8  2  zf-C2H2       Zinc finger, C2H2 type
      4e-09   36.6   7.8    0.00096   19.8   0.7    3.3  2  zf-C2H2_4     C2H2-type zinc finger
    8.1e-06   25.9  10.6    8.1e-06   25.9  10.6    1.9  2  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
     0.0026   18.1   4.4      0.035   14.5   0.6    3.4  3  zf-H2C2_2     Zinc-finger double domain
     0.0044   17.4   1.8       0.12   12.8   0.1    2.7  2  zf-met        Zinc-finger of C2H2 type
  ------ inclusion threshold ------
       0.04   14.2   2.1       0.46   10.8   0.3    3.0  2  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding
        2.7    7.8   4.9        1.2    8.9   0.7    2.5  2  zf-C2H2_11    zinc-finger C2H2-type


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.2   4.6e-17     1e-13      93     206 ..     577     702 ..     563     720 .. 0.92
   2 ?   -1.2   0.0      0.37   8.3e+02     140     158 ..     835     857 ..     764     858 .. 0.74

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 4.6e-17
  Fungal_trans  93 ilqsLlllelyektssdralher...hhgvavr.larslgLhrnpsyvgkks..........lwklweeeaesrrRlwwaaFylDktialklGrppl 175
                    +q+L l++   ++s++r+  e    h+ + ++ ++++ +++r ++   + +           w+ w+e +e+++Rl ++++  + ++++ +  +p 
    CCE27889.1 577 LVQALILVQDLGLWSGNRRRMEIaecHLVIPITmMRYRGKFQRASYPTLNVDssdegdvlqeKWRTWIE-REQWKRLVFYCYLREAQVSMTTLTNPC 672
                   59***************988888888*********************999999****************.**************************9 PP

  Fungal_trans 176 lddsqinlpLPcddddlwesddaseetlvet 206
                   l++ +++lpLP+  + lw++++a+e++ ++ 
    CCE27889.1 673 LSYAELTLPLPEARE-LWFANTAEEWKAQYL 702
                   9**************.**********99884 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.37
  Fungal_trans 140 s....lwklweeeaesrrRlwwa 158
                   +    + ++w+ ++e+r  +w+a
    CCE27889.1 835 RriypVLQQWITTSEARSAVWCA 857
                   045556689*******9999986 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   1.9   1.2e-08   2.8e-05       1      23 []     108     130 ..     108     130 .. 0.98
   2 !   21.1   0.6   1.3e-07   0.00029       1      23 []     136     158 ..     136     158 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.2e-08
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y C dCg+s++r+ +L+rH +tH
  CCE27889.1 108 YACRDCGRSYSRPKHLVRHVQTH 130
                 88********************9 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.3e-07
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 + C++C ksF rk++L+rH   H
  CCE27889.1 136 FSCEICQKSFARKDLLRRHVVNH 158
                 89*****************8777 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   1.3   7.6e-07    0.0017       1      23 [.     108     130 ..     108     131 .. 0.97
   2 !   19.8   0.7   4.3e-07   0.00096       1      23 [.     136     158 ..     136     159 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.6e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 + C+ Cg+s+s++k+L rH++th
  CCE27889.1 108 YACRDCGRSYSRPKHLVRHVQTH 130
                 89********************9 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 4.3e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f C+iC+ksF +k+ L+rH+ +h
  CCE27889.1 136 FSCEICQKSFARKDLLRRHVVNH 158
                 89******************999 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       5.3   1.2e+04       2       8 ..     137     143 ..     136     144 .. 0.73
   2 !   25.9  10.6   3.6e-09   8.1e-06       1      31 [.     180     209 ..     180     213 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.3
                 S-HHHHH CS
     Zn_clus   2 aCdnCrk 8  
                 +C+ C k
  CCE27889.1 137 SCEICQK 143
                 7888876 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 3.6e-09
                 SS-HHHHHCT---STSSSS-HHHHHCTHHHC CS
     Zn_clus   1 haCdnCrkkKvKCdakkPaCsnCkklnleCt 31 
                 haC +C   +vKCd  kP C++C+++ l C+
  CCE27889.1 180 HACRPCAAARVKCDDSKP-CQRCITRKLSCV 209
                 8*****************.***********9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.14   3.1e+02       9      25 ..     102     118 ..      98     119 .. 0.79
   2 !   14.5   0.6   1.6e-05     0.035       1      25 [.     122     146 ..     122     147 .. 0.90
   3 ?    0.3   0.1       0.5   1.1e+03       2      14 ..     151     163 ..     151     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.14
   zf-H2C2_2   9 HtgekpyeCplCdkaFk 25 
                 H + + y C  C+ +++
  CCE27889.1 102 HGSGNLYACRDCGRSYS 118
                 666788*******9997 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.6e-05
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 +L+rH  +Ht  +++ C+ C k+F+
  CCE27889.1 122 HLVRHVQTHTLGRRFSCEICQKSFA 146
                 79********6678**********8 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.5
   zf-H2C2_2   2 LrrHirkHtgekp 14 
                 LrrH  +H +++p
  CCE27889.1 151 LRRHVVNHSNDSP 163
                 89******97775 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2     0.059   1.3e+02       1      22 [.     108     129 ..     108     131 .. 0.89
   2 !   12.8   0.1   5.3e-05      0.12       1      19 [.     136     154 ..     136     156 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.059
      zf-met   1 fyCelCnvtfnsesqlksHlqG 22 
                 + C  C ++++ +++l  H q 
  CCE27889.1 108 YACRDCGRSYSRPKHLVRHVQT 129
                 569****************985 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 5.3e-05
      zf-met   1 fyCelCnvtfnsesqlksH 19 
                 f Ce+C+++f  +  l+ H
  CCE27889.1 136 FSCEICQKSFARKDLLRRH 154
                 79**********9999999 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.19   4.2e+02       4      24 ..     110     130 ..     108     130 .. 0.88
   2 ?   10.8   0.3   0.00021      0.46       2      21 ..     136     155 ..     135     158 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.19
                  BTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHlkSK 24 
                  C  C + ++  + l  H+ ++
   CCE27889.1 110 CRDCGRSYSRPKHLVRHVQTH 130
                  889**************9875 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00021
                  CBBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHl 21 
                  f C++C+K F     l+ H+
   CCE27889.1 136 FSCEICQKSFARKDLLRRHV 155
                  89**********99999996 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.7   0.00055       1.2       7      25 ..     110     128 ..     106     130 .. 0.91
   2 ?   -0.8   0.2      0.62   1.4e+03       7      24 ..     138     155 ..     136     156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00055
  zf-C2H2_11   7 CleCGlcftSqlsLsRHlf 25 
                 C++CG+ ++    L RH +
  CCE27889.1 110 CRDCGRSYSRPKHLVRHVQ 128
                 *****************75 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.62
  zf-C2H2_11   7 CleCGlcftSqlsLsRHl 24 
                 C  C   f+ +  L+RH 
  CCE27889.1 138 CEICQKSFARKDLLRRHV 155
                 7889999999999****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (997 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 6233.05
//
Query:       CCE27890.1  [L=325]
Description: uncharacterized protein CPUR_01364 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-06   28.3   0.0    2.1e-06   27.6   0.0    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
    5.7e-06   27.1   6.8      8e-06   26.6   6.8    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    0.00061   19.1   0.1    0.00095   18.5   0.1    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
        0.2   11.2   0.2        1.7    8.1   0.2    2.2  2  DLH            Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   4.7e-10   2.1e-06      29     126 ..      66     161 ..      55     176 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 4.7e-10
                    TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHH....HHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHH CS
  Abhydrolase_1  29 gfdvillDlrGvgySspapacinddygtasvaddldri....ldalgddkltlvGhSmGGmialayaaeyperVkalvllgaidpaaslieaqrqq 120
                    g dv ++Dl G g+S+   + ++ d ++  +  +l ++    l+ +g + ++lvG+S+GG ia  +a  +p+ V++lvll++    a li+a  + 
     CCE27890.1  66 GRDVDTPDLFGRGFSDGVGDLPH-DTRLY-TSQILLALasspLAWTGTQAFHLVGYSLGGGIAVPFANAFPHMVASLVLLAP----AGLIDASSFG 155
                    56677778888888887777764.44443.334444333457888999**********************************....4444444444 PP

                    HHHHHC CS
  Abhydrolase_1 121 aksfpd 126
                    + +   
     CCE27890.1 156 RLNRFV 161
                    444333 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   6.8   1.8e-09     8e-06      31     217 ..      71     313 ..      52     316 .. 0.47

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.8e-09
                    EE--TTSTS-GGCS--HHHCHHH.HHHHCCTT........TTSEEEEEETCHHHHHHHHHHCC....EE.EEES-..................... CS
  Abhydrolase_6  31 apDlpGhGrsdpppldledladl.aalldelaa......gggpvvlvGHSlGGalalaaapla..lvvg.vlldp..................... 95 
                    +pDl G G+sd+  +   d + + +++l +la+      g+ +++lvG+SlGG +a  +a +    v++ vll+p                     
     CCE27890.1  71 TPDLFGRGFSDGVGDLPHDTRLYtSQILLALASsplawtGTQAFHLVGYSLGGGIAVPFANAFphMVASlVLLAPaglidassfgrlnrfvfasgf 166
                    69999998664444333332444555555555455569788888**********9999444446644557*****555554444444443333332 PP

                    .....----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHCCCCHCHCCCGHH.................................... CS
  Abhydrolase_6  96 .pp..talpagllaaalelllallallrllawlsreplprlfladedadaawrarlarla.................................... 152
                     p+  +                        a l+++ l r++ a     +a++a+ a+                                      
     CCE27890.1 167 vPEriL------------------------AVLTGRRLQRPIAA-----RAVQAAQAATVmavaeadtkvpgeeavplekgvleyvrwmvryhegf 233
                    211220........................22222212222222.....11111111111112222222222222222222222222222222232 PP

                    ........HHCCHHCHTTCCHHTT-TTGC............EEECTT-CHHH..HCHHCCCH..STTEEET....CE...SSS.-HHHHSHHHH CS
  Abhydrolase_6 153 ........allaglgllpaaawadlpvpl............lvlggeDplvp..rllerlla..qagarlp....vvlpgaGH.lphleepdev 217
                            +         +a++++  +++            ++++++D+l++  ++ ++ l     g   +    + +  + H +++  +p ++
     CCE27890.1 234 vpafmsciR---------HAPLMGQHEQWrglarrkagttaMIFAEADELIRepEYRKQGLPlaG-G---EehvvWRVVPGRHdFVMT-HPGRI 313
                    333333332.........334444444444443333555667889****6663244444444531.2...133233333666768877.98665 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   2.1e-07   0.00095      34     117 ..      69     153 ..      64     210 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.1e-07
  Hydrolase_4  34 vyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpel.plfllGhSmGGliallyllrypdkvaglilsaPalkikakl 117
                  v + D  G G s+g     +++  y+  +  ++      + ++  + l+G S+GG ia+ ++   p+ va l+l aPa  i+a+ 
   CCE27890.1  69 VDTPDLFGRGFSDGVGDLPHDTRLYTSQILLALASSPLAWTGTqAFHLVGYSLGGGIAVPFANAFPHMVASLVLLAPAGLIDASS 153
                  5566777777777766666677777777777776666666666367799*****************************9998654 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2   0.00038       1.7      97     170 ..     111     219 ..      97     243 .. 0.68
   2 ?   -2.6   0.0      0.72   3.2e+03     140     161 ..     257     278 ..     240     282 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00038
         DLH  97 tkkvgvvGfCmGGalalllaaevpevdaavafYG...................................lspekeleeaakikapilalfgeeDefipa 160
                 t+ + +vG+ +GG +a+ +a   p + a+++                                      l+ +    +++ ++a  ++ ++e+D+ +p 
  CCE27890.1 111 TQAFHLVGYSLGGGIAVPFANAFPHMVASLVLLApaglidassfgrlnrfvfasgfvperilavltgrrLQRPIAARAVQAAQAATVMAVAEADTKVPG 209
                 667889***************996666655544446777777777777777777777777777777744333334445566666667777777777777 PP

         DLH 161 devekleeal 170
                 +e+  le+ +
  CCE27890.1 210 EEAVPLEKGV 219
                 7777777666 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.72
         DLH 140 aakikapilalfgeeDefipad 161
                 a++ +++  ++f+e+De i   
  CCE27890.1 257 ARRKAGTTAMIFAEADELIREP 278
                 5566678888999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2375.07
//
Query:       CCE27891.1  [L=100]
Description: uncharacterized protein CPUR_01365 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   14.7   0.4      0.041   14.4   0.4    1.1  1  Dermcidin  Dermcidin, antibiotic peptide


Domain annotation for each model (and alignments):
>> Dermcidin  Dermcidin, antibiotic peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.4   2.3e-06     0.041       7      83 ..       4      83 ..       1      89 [. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.3e-06
   Dermcidin  7 asasgsgnpsrea..saaqkenagedpvla.rqapkprkqrsslleksldgakkaldgleklgkeavedlesvgkgkeer 83
                +s+s s  psr +  s+aq + +    +la r++       ss+l +  + ++  ++  ++ g+ a ++le+v + ++ r
  CCE27891.1  4 SSTSSSPRPSRATqpSCAQLDASYSPARLAsRNTSEDEDSDSSVLRQEANDSETDVNIDGDSGQGAEDNLETVHRRRRSR 83
                67788888988543389999999888899846778889999********************************9888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 769.47
//
Query:       CCE27892.1  [L=110]
Description: uncharacterized protein CPUR_01366 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-07   29.4   0.1      0.025   15.2   0.1    2.3  2  Nup_retrotrp_bd  Retro-transposon transporting motif
     0.0037   16.9   2.8         18    5.1   0.0    4.8  5  Calponin         Calponin family repeat
  ------ inclusion threshold ------
       0.19   11.6   1.0         76    3.2   0.0    3.3  3  PRA-CH           Phosphoribosyl-AMP cyclohydrolase
       0.54   10.5   9.3         22    5.4   0.1    4.4  5  DUF1811          Protein of unknown function (DUF1811)
       0.79    9.2   2.8        3.9    7.0   0.3    2.4  2  Spem1            Spermatid maturation protein 1
        1.2    9.8   7.2         54    4.5   0.1    3.9  5  RCC1             Regulator of chromosome condensation (RCC1) 


Domain annotation for each model (and alignments):
>> Nup_retrotrp_bd  Retro-transposon transporting motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   8.5e-06     0.025       6      49 ..       4      46 ..       2      48 .. 0.84
   2 !   14.2   0.0   1.8e-05     0.053       6      58 ..      42     101 ..      37     108 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.5e-06
  Nup_retrotrp_bd  6 dpasvfgagnsntnfsfaksaestpfgFgasqstpqsanspsai 49
                     dp++vf  g    n +f++  +s++f++g ++  +    +ps++
       CCE27892.1  4 DPSGVFAWGRKRHN-AFMSGDPSGVFAWGRKRHNAFMSGNPSGV 46
                     9************9.**************977776666666665 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.8e-05
  Nup_retrotrp_bd   6 dpasvfgagnsntnfsfaksaestpfgFgasqstpqsanspsaitapa.......lsqtP 58 
                      +p++v   g    n +f++  +s++f +g ++  p     ps+++a         + ++P
       CCE27892.1  42 NPSGVSAWGRKRDNLAFMSGDPSGVFVWGRKRHNPFMSGDPSGVSAWGrkrhnlaFTGNP 101
                      9**********************************9999999998765445555555555 PP

>> Calponin  Calponin family repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.033        97      14      25 .]       6      17 ..       6      17 .. 0.92
   2 ?    2.7   0.0     0.033        97      14      25 .]      25      36 ..      25      36 .. 0.92
   3 ?    1.1   0.0      0.11   3.1e+02      14      24 ..      44      54 ..      42      55 .. 0.89
   4 ?    0.8   0.0      0.13   3.9e+02      14      25 .]      64      75 ..      64      75 .. 0.86
   5 !    5.1   0.0     0.006        18      14      25 .]      83      94 ..      83      94 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.033
    Calponin 14 sGMtafGarRhI 25
                sG+ a G  Rh+
  CCE27892.1  6 SGVFAWGRKRHN 17
                7999*******6 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.033
    Calponin 14 sGMtafGarRhI 25
                sG+ a G  Rh+
  CCE27892.1 25 SGVFAWGRKRHN 36
                7999*******6 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.11
    Calponin 14 sGMtafGarRh 24
                sG++a G  R 
  CCE27892.1 44 SGVSAWGRKRD 54
                8*******996 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.13
    Calponin 14 sGMtafGarRhI 25
                sG+ + G  Rh+
  CCE27892.1 64 SGVFVWGRKRHN 75
                688889*****6 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.006
    Calponin 14 sGMtafGarRhI 25
                sG++a G  Rh+
  CCE27892.1 83 SGVSAWGRKRHN 94
                8**********6 PP

>> PRA-CH  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.025        76      22      38 ..      11      27 ..       5      29 .. 0.87
   2 ?    2.9   0.1     0.032        95      22      38 ..      30      46 ..      26      51 .. 0.88
   3 ?    2.4   0.0     0.047   1.4e+02      20      38 ..      67      85 ..      57      91 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.025
                EETTTTEEEETTTTTS- CS
      PRA-CH 22 ySrsrkklWkKGetSgn 38
                + r+r++ ++ G+ Sg 
  CCE27892.1 11 WGRKRHNAFMSGDPSGV 27
                99*************96 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.032
                EETTTTEEEETTTTTS- CS
      PRA-CH 22 ySrsrkklWkKGetSgn 38
                + r+r++ ++ G+ Sg 
  CCE27892.1 30 WGRKRHNAFMSGNPSGV 46
                99************995 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.047
                EEEETTTTEEEETTTTTS- CS
      PRA-CH 20 vyySrsrkklWkKGetSgn 38
                + + r+r++ ++ G+ Sg 
  CCE27892.1 67 FVWGRKRHNPFMSGDPSGV 85
                5599***********9995 PP

>> DUF1811  Protein of unknown function (DUF1811)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1      0.01        31      77      86 ..       7      16 ..       5      24 .. 0.82
   2 ?    5.4   0.1    0.0073        22      76      86 ..      25      35 ..      16      44 .. 0.82
   3 ?    0.9   0.0      0.18   5.4e+02      76      86 ..      44      54 ..      35      63 .. 0.81
   4 ?    1.4   0.1      0.13   3.8e+02      76      86 ..      64      74 ..      56      80 .. 0.85
   5 ?    1.0   0.0      0.17   5.1e+02      76      86 ..      83      93 ..      72     103 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.01
                TTEEEEEETT CS
     DUF1811 77 GvfawGyres 86
                GvfawG +++
  CCE27892.1  7 GVFAWGRKRH 16
                9*****9874 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0073
                ETTEEEEEETT CS
     DUF1811 76 nGvfawGyres 86
                 GvfawG +++
  CCE27892.1 25 SGVFAWGRKRH 35
                69*****9874 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.18
                ETTEEEEEETT CS
     DUF1811 76 nGvfawGyres 86
                 Gv awG +++
  CCE27892.1 44 SGVSAWGRKRD 54
                699****9874 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.13
                ETTEEEEEETT CS
     DUF1811 76 nGvfawGyres 86
                 Gvf wG +++
  CCE27892.1 64 SGVFVWGRKRH 74
                59*****9874 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.17
                ETTEEEEEETT CS
     DUF1811 76 nGvfawGyres 86
                 Gv awG +++
  CCE27892.1 83 SGVSAWGRKRH 93
                699****9874 PP

>> Spem1  Spermatid maturation protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3      0.03        89     207     225 ..      41      59 ..      23      76 .. 0.76
   2 ?    7.0   0.3    0.0013       3.9     207     236 ..      80     109 ..      63     110 .] 0.88

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.03
       Spem1 207 glpsnvGlWGrqGgiLasl 225
                 g ps v  WGr+   La +
  CCE27892.1  41 GNPSGVSAWGRKRDNLAFM 59 
                 5699999999999999855 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0013
       Spem1 207 glpsnvGlWGrqGgiLaslpppslylsPel 236
                 g ps v  WGr+   La    psl ls +l
  CCE27892.1  80 GDPSGVSAWGRKRHNLAFTGNPSLGLSVDL 109
                 459*********************999765 PP

>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.018        54       3      12 ..       7      16 ..       6      18 .. 0.83
   2 ?    4.5   0.1     0.018        54       3      12 ..      26      35 ..      25      37 .. 0.83
   3 ?   -3.1   0.0       4.5   1.3e+04       6      10 ..      48      52 ..      46      54 .. 0.78
   4 ?    2.6   0.1     0.073   2.2e+02       3      12 ..      65      74 ..      64      75 .. 0.83
   5 ?   -2.1   0.0         2   6.1e+03       6      12 ..      87      93 ..      85      94 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.018
                EEEEEE--GG CS
        RCC1  3 rVysWGrndy 12
                 V++WGr  +
  CCE27892.1  7 GVFAWGRKRH 16
                59****9887 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.018
                EEEEEE--GG CS
        RCC1  3 rVysWGrndy 12
                 V++WGr  +
  CCE27892.1 26 GVFAWGRKRH 35
                59****9887 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4.5
                EEE-- CS
        RCC1  6 sWGrn 10
                +WGr 
  CCE27892.1 48 AWGRK 52
                79985 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.073
                EEEEEE--GG CS
        RCC1  3 rVysWGrndy 12
                 V+ WGr  +
  CCE27892.1 65 GVFVWGRKRH 74
                59****9876 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 2
                EEE--GG CS
        RCC1  6 sWGrndy 12
                +WGr  +
  CCE27892.1 87 AWGRKRH 93
                7**9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        92  (0.00513135); expected 358.6 (0.02)
Passed bias filter:                       82  (0.0045736); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 830.83
//
Query:       CCE27893.1  [L=19]
Description: uncharacterized protein CPUR_01367 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (19 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        52  (0.00290033); expected 358.6 (0.02)
Passed bias filter:                       43  (0.00239835); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.22s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 162.83
//
Query:       CCE27894.1  [L=389]
Description: uncharacterized protein CPUR_01368 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2827.61
//
Query:       CCE27895.1  [L=534]
Description: probable CMK1-Ca2+/calmodulin-dependent ser/thr protein kinase type I [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-69  233.3   0.0    3.9e-69  232.9   0.0    1.1  1  Pkinase        Protein kinase domain
    4.8e-34  117.8   0.0    6.3e-34  117.4   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
    0.00011   21.6   0.0    0.00019   20.9   0.0    1.3  1  Kinase-like    Kinase-like
    0.00092   18.6   0.0     0.0022   17.4   0.0    1.6  2  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0056   16.2   0.0      0.016   14.8   0.0    1.7  1  YrbL-PhoP_reg  PhoP regulatory network protein YrbL


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.9   0.0   1.1e-72   3.9e-69       1     264 []     172     427 ..     172     427 .. 0.92

  Alignments for each domain:
  == domain 1  score: 232.9 bits;  conditional E-value: 1.1e-72
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 y+  ++lG G++G+V +a       +vAvK+i k++ k ++ k v  E+ +l++lkhp+ivr++++fe+ d++y+v+e++ ggel+d++ ++g+++e++
  CCE27895.1 172 YRFGKTLGAGTYGVVREAD--GPTGKVAVKIILKKNVKGNE-KMVYDELDMLQRLKHPHIVRFVDWFESRDKFYIVTELATGGELFDRICEQGKFTEKD 267
                 677899***********99..68889*********999877.59******************************************************* PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE...EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekge...lKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgk 194
                 a++ +kqi+++++ylH++ ++HrDlKpeN+L+ +++    l ++DFG+ak l+s+++ l+++ g+  Y APEv+++++++k+vD+Ws+Gvi y+ll+g 
  CCE27895.1 268 ASQTIKQIMSAVDYLHDNDVVHRDLKPENLLYVTREPdsnLILADFGIAKALDSKEEtLKTMAGSFGYAAPEVMEQKGHGKPVDMWSMGVITYTLLCGY 366
                 ********************************95332456**************9999***************************************** PP

                 -STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 195 ppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 ppf+    +e    +l++l + + i  ++ ++ + ++++s++akd++  l+  dp+kR t +e+l+h +l
  CCE27895.1 367 PPFR----SE----NLRDLLRECTIA-PVPFHERYWKDVSQDAKDFILGLIVPDPEKRSTSKEALNHIWL 427
                 ****....33....444444445554.7789999**********************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.0   1.8e-37   6.3e-34       2     214 ..     173     377 ..     172     424 .. 0.88

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 1.8e-37
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                  ++gk+lG+G++G V e+         + kVavK++ +++ + +++++++e++++++lkhp+iv+++ +  ++++ +ivte+++gG+L + + ++   k
   CCE27895.1 173 RFGKTLGAGTYGVVREADGP------TGKVAVKIILKKNVKGNEKMVYDELDMLQRLKHPHIVRFVDWFESRDKFYIVTELATGGELFDRICEQ--GK 262
                  5799***********99888......99*******999999999***********************************************998..9* PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvl 194
                  +t kd  + + q+ ++++yL+++++vHrdl   N L  +   ++   ++DfG+a+++  d++ ++ ++   ++ + apE++++k   +  D+Ws Gv+
   CCE27895.1 263 FTEKDASQTIKQIMSAVDYLHDNDVVHRDLKPENLLYVTrepDSNLILADFGIAKAL--DSKEETLKTMAGSFGYAAPEVMEQKGHGKPVDMWSMGVI 358
                  ************************************87656677999**********..555555566677899************************ PP

                  HHHHHTTSSGTTTTSHHHHH CS
  Pkinase_Tyr 195 lwEiftlgespypglkneev 214
                  ++ +++ g  p+++ + +++
   CCE27895.1 359 TYTLLC-GYPPFRSENLRDL 377
                  ****99.8888876555554 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   5.2e-08   0.00019     139     251 ..     263     370 ..     241     382 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 5.2e-08
  Kinase-like 139 kkletiarlllTlqlirlaanLqakglvhgkftvdnlll...dekgglmlggftaLvragtkvvl.seve..kgfaPpEllgsrggytrknktkmthk 230
                  + ++++++  +  q++  + +L+++ +vh +++++nll+   +++  l+l +f+       k     +++   g+a pE++ ++g            +
   CCE27895.1 263 FTEKDASQT-I-KQIMSAVDYLHDNDVVHRDLKPENLLYvtrEPDSNLILADFGIAKALDSKEETlKTMAgsFGYAAPEVMEQKGH---------GKP 349
                  444444444.4.488999********************944456789******855444444333234434689*********887.........558 PP

  Kinase-like 231 ldaWqlGlviyriwclklPlt 251
                  +d W +G+  y + c + P+ 
   CCE27895.1 350 VDMWSMGVITYTLLCGYPPFR 370
                  9**************999986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.2e-07    0.0022      94     167 ..     243     314 ..     233     333 .. 0.85
   2 ?   -3.7   0.0       1.7   6.3e+03     179     203 ..     370     396 ..     370     398 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.2e-07
         Kdo  94 llterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 ++te  +g +  + ++++  ++ e+   +++k++  ++  lh+ +v H+dl + n+l  ++e  + +++l D+ 
  CCE27895.1 243 IVTELATGGELFDRICEQ-GKFTEKDASQTIKQIMSAVDYLHDNDVVHRDLKPENLLYVTRE-PDSNLILADFG 314
                 677777777777777776.6689999999****************************99997.88899999985 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.7
         Kdo 179 rekdLarLkrsfl..kielteadweal 203
                 r+++L+ L+r      + ++e+ w+++
  CCE27895.1 370 RSENLRDLLRECTiaPVPFHERYWKDV 396
                 578999999987777777888877765 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.4e-06     0.016     120     166 ..     267     312 ..     251     325 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.4e-06
  YrbL-PhoP_reg 120 ltaelkeaLdefleelldnhivtndlsakNivvkknsegeeelvlvD 166
                    ++ +  +++   +++l dn++v +dl+++N+++ +++ +  +l+l D
     CCE27895.1 267 DASQTIKQIMSAVDYLHDNDVVHRDLKPENLLYVTREPDS-NLILAD 312
                    23345566777889*******************9998887.888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3816.01
//
Query:       CCE27896.1  [L=156]
Description: related to ubiquitin-conjugating enzyme E2-18 kDa [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-27   94.7   0.0    4.7e-27   94.4   0.0    1.0  1  UQ_con     Ubiquitin-conjugating enzyme
    6.8e-08   32.3   0.0    9.9e-08   31.8   0.0    1.4  1  Prok-E2_B  Prokaryotic E2 family B
    0.00017   21.9   0.0    0.00019   21.7   0.0    1.2  1  RWD        RWD domain
    0.00058   19.7   0.1     0.0011   18.8   0.1    1.4  1  UEV        UEV domain
  ------ inclusion threshold ------
      0.077   12.6   0.0      0.097   12.3   0.0    1.2  1  UFC1       Ubiquitin-fold modifier-conjugating enzyme 1


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0   1.3e-30   4.7e-27       4     125 ..      12     140 ..       8     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 1.3e-30
                 HHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB..TTSTTTTEEEEEEEE--TTTTTS--EEEESS.....T-SCTTBETTSBB-CGGGSTTT--TTSH CS
      UQ_con   4 kelkelakkkpsgisaklvddenlfewkvlikgp.edtpYeggvFklelefpedYPlkpPkvkfvt.....kifHPnvdksGevcldiLkeekWspalt 96 
                 ke +++ +k+      +lvd ++l++w + i    ++ +Ye+++F+l+++fp++YP++pP+v+f +       +HP+++++G +cld+L ++ Wsp+++
  CCE27896.1  12 KERQKI-EKAGLAPGIELVDGDSLQNWVFDIRVLdSNPLYENQIFRLKFSFPPSYPIEPPEVTFDStpdrpVPMHPHIYSNGIICLDLLDTQGWSPVQS 109
                 555543.333333345566767*********99835678**************************889998899************************* PP

                 HHHHHHHHHHHHHS-..-TTS-SSHHHHHHH CS
      UQ_con  97 lesvllsiqsLlaep..npesplnkeaakll 125
                  esv++siqs+l++   n++ p +++  k+ 
  CCE27896.1 110 AESVCMSIQSMLTSNvkNERPPGDEDFVKQN 140
                 ************6655466666777766665 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.8e-11   9.9e-08      34     118 ..      51     137 ..       5     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2.8e-11
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlk..llpHintfggaLClleeeldldewdpngsvadvleqlqqvLnegisgde...daefa 118
                 +  +++l++ +p+s+p  pp v       ++  + pHi++ +g +Cl    ld++ w p +s+  v  ++q +L+ +++ +    d++f+
  CCE27896.1  51 ENQIFRLKFSFPPSYPIEPPEVTFDSTPDRPvpMHPHIYS-NGIICLD--LLDTQGWSPVQSAESVCMSIQSMLTSNVKNERppgDEDFV 137
                 56789*****************99866667778*******.******6..9************************999887766666665 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.4e-08   0.00019      50      84 ..      50     109 ..      12     132 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 5.4e-08
                 T-CEEEEEEEEE-SSTTSS--EEEEEECC.........................SS-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxx RF
         RWD  50 kkkpslkleiklpeeYPeeaPiislsste.........................nlpkeq 84 
                  ++  ++l++++p++YP e+P++++ st                          + p + 
  CCE27896.1  50 YENQIFRLKFSFPPSYPIEPPEVTFDSTPdrpvpmhphiysngiicldlldtqgWSPVQS 109
                 346789*********************997777776666666666665555555444444 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1     3e-07    0.0011      57     120 ..      62     130 ..      52     131 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3e-07
                 -TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHH..HS--T..TT--HHHHHHHHHH.-----XX CS
         UEV  57 lesyPveaPivyvkptksmvikknenvdaqGlvylpyL..eeWkr..eksnlvslvqelaq.afeeesP 120
                 + syP+e+P v  ++t +  +  + ++ ++G + l++L  + W++  ++ ++ + +q++ +  +++e P
  CCE27896.1  62 PPSYPIEPPEVTFDSTPDRPVPMHPHIYSNGIICLDLLdtQGWSPvqSAESVCMSIQSMLTsNVKNERP 130
                 779***********************************4446**9644455999999987744444444 PP

>> UFC1  Ubiquitin-fold modifier-conjugating enzyme 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.7e-05     0.097      74     115 ..      54      99 ..      29     127 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.7e-05
        UFC1  74 efdlefdipvtypataleialpeldgktakm....yrgGkicltih 115
                  f+l+f  p +yp  ++e+++ +   +   m    y +G icl+  
  CCE27896.1  54 IFRLKFSFPPSYPIEPPEVTFDSTPDRPVPMhphiYSNGIICLDLL 99 
                 499*****************99988876544333399*****9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1161.56
//
Query:       CCE27897.1  [L=661]
Description: related to VPS33-vacuolar sorting protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.8e-125  418.1   0.0   9.9e-125  418.0   0.0    1.0  1  Sec1      Sec1 family


Domain annotation for each model (and alignments):
>> Sec1  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.0   0.0  5.5e-129  9.9e-125       1     574 [.      31     643 ..      31     644 .. 0.91

  Alignments for each domain:
  == domain 1  score: 418.0 bits;  conditional E-value: 5.5e-129
                 EEEEE-HHHHHHHHTT--HHHHHTTTEEETT..T--S-.....BTTSEEEEEE-S.-HHHHHHHHHHHHSS.....-SBS-EEEEESS---...HHHHH CS
        Sec1   1 KvLvlDkelskilssvlkvsdlleegVtkieklkkrepskrealphlkaiyflrp.tkenidrlakdfisa.....rrykeyhifftprls...eslle 90 
                 K +v+Dk+l +++++++kv+ l+e gV+k++ l  ++ +++++++++  +++ r       + +a ++i++      +++e+h+f++pr++   ++lle
  CCE27897.1  31 KNIVFDKSLVGPIGTIVKVNTLQEYGVDKFFVL--ENDNVDTSQQNV--VFIARGeCGRHAETIA-SQIKRvrsqsHTTHEFHVFWVPRRTlvsDQLLE 124
                 789********************77******99..88889*******..*****9999*******.56666788999********************** PP

                 ..HHHH..SG.GGGEEEEE----SEEEETTEEE-STTHHHHSTTG.....GG.......--HHHHHHHHHHHHHHH.-..--EEEE-TT-HHHHHHHH. CS
        Sec1  91 ..glakadeevvkkvklkelnldfvplesdlfslnpelplsfrdlyldndnsaleeeieslldriakgLlsvllsl.ekkiPiirykgsaasmvakkla 186
                   g++ +d   v+   ++el+l f+ple+d++sl  el++sfrdlyl++d + ++         +ak+L+   +++  + +P+i++kg++a++v++ l 
  CCE27897.1 125 eaGVL-GD---VN---ISELPLFFFPLEKDVLSL--ELDDSFRDLYLSKDVTPTYL--------LAKALME--VQQhHGLFPRIIGKGDNAKRVSDLLV 204
                 99999.89...98...88****************..9***************9999........*******..888335*******************9 PP

                 .........HHHHTTT......--SS--EEEEE-GGG-SSTTTS---BHHHHHHHHS--BTEEEEEE--SS.............SEEEEEE--TT..-T CS
        Sec1 187 delkekidskknfese......ssrqrpvLiIlDRsvDlvtpllhqwTYqaliddllgglnnnnvvleeep.............keekeaelvesssDe 266
                 ++ +e++   ++++++      +s+++  +iI+DR vDlvtpll+q+TY++lid++++ ++nn++++ ++              + +ke++l++s sD+
  CCE27897.1 205 RMRQEHLAG-EDTSDSttagltPSTTNESIIIIDREVDLVTPLLTQLTYEGLIDEVFE-IQNNQTKVDTTIvgaparsgaaattQGRKETVLLDS-SDK 300
                 999999987.3333335699*9999999*****************************8.75555555555588**********877888888888.9** PP

                 THHHHTTSBHHHHHHHHHHHHHHHHHHH.HTTT....-TTHHHHHHHHHH-GGGHHHHHHHHHHHHHHHHHHHHS-HHH.HHHHHHHHHHHHSS--..B CS
        Sec1 267 ffaelrhlnfgevgeklkkeakeyqeen.ekkrn.gakesiadlkkfvaklpelqeekkklskHtnlaeellkevkkrkldellelEqdlatgesd.kk 362
                 ++ +lr+ nf+ vg  l+k a+++q+   + +++ ++k ++a+lk+fv +lp++q+e+++  +Ht +aee++k+++++++  lle++q+la+g  d ++
  CCE27897.1 301 LYDQLRDANFAIVGGMLNKVARRLQQVQsDYESKhKTK-TLAELKEFVGQLPGYQQEHRSARIHTGMAEEIIKHTRTDQFKGLLEVQQNLAAGA-DpSS 397
                 *************************7776666665777.****************************************************964.6678 PP

                 --..-HHHHHHHH-TTS-H.HHHHHHHHHHHH...-B.-HT--GG....GGHHHHGGGGG........---.BGGG-------................ CS
        Sec1 363 ikekkvieeliaddeptseledklRLlllyslvegglkekelkellrelvqsalygleylktlrsleklgllkkrkgkksskkkss............. 448
                 + +   ieelia ++p   l++ lRLl++ys++ gg+k+ke++++++ ++q   yg+++l tl +lekl+l+ +r++  +    ++             
  CCE27897.1 398 QFDG--IEELIACNAP---LRETLRLLCIYSCISGGVKPKEFEQFRKLILQ-G-YGHQHLLTLYNLEKLQLFLSRSSPLAGMIPMTggntvttgtktny 489
                 7755..*******999...9*************99****************.8.*****************988888777777777************* PP

                 ..........---------S.......TT-----HHHHHHHHHTTT-S-TTTS-BSS-GGGS----.........................-------- CS
        Sec1 449 ......lklikeeedeesnyd....lsgvsryaPllvrlvealikgkklssespslskkdpsqees.........................ssslrsak 512
                       l+li +e++e++++d    +sg   yaPl++rlv++++++k l+s  +  s ++p +++                          ++++++a 
  CCE27897.1 490 tylrkqLRLIVDEVQEDNPNDiayvYSG---YAPLSIRLVQCVLQKKYLTSICKGGSAPGPGAASApwvgqgwhgfdeavkhargktfyelQRGQDKAV 585
                 *********************8888888...**************9999999988777776666669*********************98877777777 PP

                 --------------S-EEEEEEEEEE-HHHHHHHHHHT...TSSSEEEEEEEEE--HHHHHH CS
        Sec1 513 ktnsaskesaekkkkqrviVffvGGvTysEiralrllskqekknkeiiigttsilnpksfle 574
                 k+ +  +++ +k   q+v+V+fvGG+T++Ei+alr+l+kqe   ++iii+ttsi++++++++
  CCE27897.1 586 KARALLSGNGAK---QTVFVVFVGGITFTEIAALRFLAKQE-VRRNIIICTTSIISGNRMMD 643
                 777777777777...***********************986.7889************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 4870.28
//
Query:       CCE27898.1  [L=1079]
Description: uncharacterized protein CPUR_01372 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-79  268.1   0.1    5.9e-65  220.3   0.0    2.1  2  Amino_oxidase  Flavin containing amine oxidoreductase
    9.6e-14   51.5   0.0    2.1e-13   50.4   0.0    1.6  1  SWIRM          SWIRM domain
    2.3e-08   34.3   1.6    2.3e-08   34.3   1.6    3.1  3  HMG_box        HMG (high mobility group) box
      4e-08   33.4   0.0    1.1e-07   32.0   0.0    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.6e-06   28.6   1.5    1.6e-06   28.6   1.5    1.9  2  HMG_box_2      HMG-box domain
    0.00028   20.6   0.3    0.00055   19.6   0.3    1.5  1  DAO            FAD dependent oxidoreductase
    0.00053   19.3   0.0      0.001   18.4   0.0    1.5  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
        0.1   12.6   0.1       0.63   10.0   0.0    2.3  2  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   2.2e-15     5e-12       1      82 [.     311     419 ..     311     485 .. 0.80
   2 !  220.3   0.0   2.6e-68   5.9e-65     157     452 .]     581     881 ..     562     881 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 2.2e-15
                    HHHHHHHHHH...........HHTT...EEEEEEESSSSSBTTS-EEEET......T.......EEEESS--EEET..TTHHHHHHHHH.TTCCCC CS
  Amino_oxidase   1 laGLaaArqL...........lsaG...fdVtvlEardrvGGRirtvrsd......G.......ylielGamwftg..agnpllellke.lgleds 66 
                    ++GL++ArqL           ++ G   ++V+++E+r+rvGGR+++++++      +        ++e+G+m++tg   gnp+  l++  lgl+ +
     CCE27898.1 311 ISGLSCARQLqglfaqyadrfTEMGesvPKVVIVEGRSRVGGRVYSREFKtklngrNpdfkdkrRTAEMGGMIITGfeRGNPINILVRGqLGLQYH 406
                    8********************888888**************************96615566677**************999999999866999988 PP

                    EEEESCCGCEEEEETT CS
  Amino_oxidase  67 lslpdpgapkrvlskg 82 
                      +p+ +    ++s g
     CCE27898.1 407 ALTPETT---IYDSSG 419
                    8877766...333333 PP

  == domain 2  score: 220.3 bits;  conditional E-value: 2.6e-68
                    HHHHHHHHHHHHHHHHHHCHTSTTTTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHHTTTTEEEETSEEEEEEEE...ETTC.EEEEETTS CS
  Amino_oxidase 157 wdrliepelfaklefasglfagdpselsaklalpllwelegfggslllprgGlsqlpealaeelrgldirlntrVkeikr...egdg.vtvtledg 248
                     +rl++ ++ a+le+++++     s+  ++l+l++ ++ ++ +gs++++ gG++ +++ l +   +ld+ +   Vk i++   ++dg  +++ edg
     CCE27898.1 581 DCRLFN-WHIANLEYSNAA-----SLHRLSLSLWDIDAGNEWEGSHTMVVGGYQGVARGLLQCPTPLDLITKFAVKTIRYhssSSDGpASIESEDG 670
                    567777.9***********.....99*******************************************************9977778******** PP

                    TEEEESEEEE-S-HHHHH..SSEEESCCSHHHHHHHHHSEEEEEEEEEEEESSGGSGCSTS....ECE.......CECCCEEETTTEEEEECCECC CS
  Amino_oxidase 249 evveaDaVvvTvplgvlk..ailfsPplpdekaeairnlgfgsvnkvilefdrkfwednal....gqg.......vlvseltttlgeafissdfps 331
                    +vv+aD Vv+Tvplgvlk   i+f+P lp++k+ ai++lgfg++nkv+l +++ fw++n +                 ++ +  +g+ f +  f+ 
     CCE27898.1 671 TVVTADNVVCTVPLGVLKqgDIKFDPALPQWKTGAIERLGFGVLNKVVLVYKEIFWDSNRHifgvL-RnppnknsTRQEDYSLNRGRFFQW--FNV 763
                    **********************************************************99755431.145566778888888889999999..999 PP

                    CSTTTEEEEEEEEECHHHHHHHTTS-HHHHHHHHHHHHHHHHTGTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SG CS
  Amino_oxidase 332 rappgkglvllvyvggdaaneleslsdeelvqavlrdLrklfgeevpepkatlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGe 427
                     +++g +  l+ +++g+a+ + e  ++e lv++++++Lr++fg +vp+p++ ++trW++d++argsys  ++   +edyd +a+p  +++l fAGe
     CCE27898.1 764 TNTTGLPC-LIGLMAGEAGFDTERSTNESLVEEATQVLRSVFGRKVPYPVESVITRWGSDRFARGSYSSAAPEMLPEDYDLMAQP--IGNLSFAGE 856
                    99999999.****************************************************************************..********* PP

                    GGCTTTTTSHHHHHHHHHHHHHHHH CS
  Amino_oxidase 428 htsreypgtvegAilSGlraAaril 452
                    ht+ ++p+tv+gA+lSGlraA ++l
     CCE27898.1 857 HTTGTHPATVHGAYLSGLRAASEVL 881
                    **********************997 PP

>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   9.5e-17   2.1e-13       4      89 .]     202     280 ..     198     280 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 9.5e-17
       SWIRM   4 ewFdpdslhpiEkellselfngkdktpeeYlkiRnkiialyrenpkeyltvteaqkalkrrrltgidvnllsrihefLerwGlINf 89 
                 + ++p++lhp+E +ll +++++  ++ ++Yl+iRn i++l+ +np+  +t++ a  +++     +++++++s ++++L r G+IN+
  CCE27898.1 202 SRLNPYALHPEEYHLLRHHISH--AQVTTYLNIRNSILRLWLQNPRLCVTRKIAIGCAN-----SRWFDAASVCYDWLVRGGYINY 280
                 568999**************76..89****************************99999.....77*******************8 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.2   4.9e+03      10      27 ..     354     371 ..     354     374 .. 0.90
   2 !   34.3   1.6     1e-11   2.3e-08       8      65 ..     948    1013 ..     942    1017 .. 0.81
   3 ?    3.1   0.2     0.058   1.3e+02      45      65 ..    1018    1038 ..    1015    1040 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHSTTS- CS
     HMG_box  10 lfskeqraklkaenPelk 27 
                 ++s+e + kl   nP+ k
  CCE27898.1 354 VYSREFKTKLNGRNPDFK 371
                 69*************976 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1e-11
                  HHHHHHHHHHHHHHHS........TTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box    8 fflfskeqraklkaen........PelknaeiskklgekWkalseeeKkkYeekaekekaryekek 65  
                  ++lfsk++ ++ ++++        P+ + +++ ++ +++Wk+ ++ee+++Yee+a +++a y+k++
  CCE27898.1  948 YLLFSKQNFENARKKCeagrkngkPRTTPNDVRVMTSKMWKEATPEERQPYEEDALAQRAAYNKAM 1013
                  777777776666655444444444****************************************98 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.058
                  HHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   45 eeKkkYeekaekekaryekek 65  
                  ee + ++eka +++arye+e+
  CCE27898.1 1018 EESRVWDEKAVRLRARYEAEH 1038
                  66788*************998 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   4.9e-11   1.1e-07       1      59 [.     306     391 ..     306     398 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 4.9e-11
                    EE--SHHHHHHHHHHH.............CCTE...EEEEE-SSSSSSGGG-EECE........TT.....CEECTS---EEETTHHH CS
  NAD_binding_8   1 IvGaGlsGlvaAylLa.............kagf...dvlllekrdrlGGraasyev........pg.....vrvdygahifhgsgyyp 59 
                    +vGaG+sGl++A+ L+                    +v+++e r+r+GGr++s+e+        p+     ++++ g  i++g+++ +
     CCE27898.1 306 VVGAGISGLSCARQLQglfaqyadrftemG--EsvpKVVIVEGRSRVGGRVYSREFktklngrnPDfkdkrRTAEMGGMIITGFERGN 391
                    8***************77776655443221..23479******************987775544115666788888888888876555 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   1.5     7e-10   1.6e-06       6      70 ..     943    1014 ..     939    1017 .. 0.92
   2 ?   -1.9   0.0       2.3   5.3e+03      49      69 ..    1018    1038 ..    1014    1040 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 7e-10
                  SS--HHHHHHHTTHHHHHHH.......T---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS CS
   HMG_box_2    6 aarnAYalfvqemipelkrk.......GnpviglaevsklcsekWkalseeeKekYeekAkedkkrydreal 70  
                      +Y+lf ++  +++++k       G+p+   ++v    s+ Wk    ee+++Yee A +++++y++ + 
  CCE27898.1  943 VTATGYLLFSKQNFENARKKceagrknGKPRTTPNDVRVMTSKMWKEATPEERQPYEEDALAQRAAYNKAMV 1014
                  44589*********************9****************************************99886 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.3
                  HHHHHHHHHHHHHHHHHHH-S CS
   HMG_box_2   49 eeKekYeekAkedkkrydrea 69  
                  ee   ++ekA  +++ry++e 
  CCE27898.1 1018 EESRVWDEKAVRLRARYEAEH 1038
                  5667789**********9986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   2.4e-07   0.00055       2      33 ..     304     351 ..     303     357 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.4e-07
                 EEEECTSHHHHHHHHHH.......HHT....T.....EEEEESSSSTT CS
         DAO   2 vviiGGGiiGlstAyeL.......arr....g.....Vtllekgdiag 33 
                 vv++G+Gi Gls+A++L       a r    g     V+++e ++++g
  CCE27898.1 304 VVVVGAGISGLSCARQLqglfaqyADRftemGesvpkVVIVEGRSRVG 351
                 9****************7766444222333347888999999998887 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.5e-07     0.001     142     189 ..     295     363 ..     252     367 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.5e-07
                  T......SEEEEES-SHHHHHHHHHHHHHT-..............EEEEEESSSSSS.TTS-HHHHHHH CS
                  x......xxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2 142 p......krivvvGgGyiGvElAaalaklgk..............evtlveardrll.raldkelsaal 189
                  p      + +vvvG+G  G+ +A +l  l +              +v++ve r+r+  r + +e++  l
   CCE27898.1 295 PanggrrRTVVVVGAGISGLSCARQLQGLFAqyadrftemgesvpKVVIVEGRSRVGgRVYSREFKTKL 363
                  1445555999***************64442224448888888999999*********999999987765 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00028      0.63       1      47 [.     305     360 ..     305     367 .. 0.75
   2 ?   -1.4   0.0      0.93   2.1e+03     132     152 ..     660     681 ..     645     682 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00028
  NAD_binding_9   1 aivGaGprGlavlerLlara.........kkkspleitlfdpsep.gagrvwrtdqs 47 
                    ++vGaG++Gl+++++L               +s  ++ +++ ++  g grv++++ +
     CCE27898.1 305 VVVGAGISGLSCARQLQGLFaqyadrfteMGESVPKVVIVEGRSRvG-GRVYSREFK 360
                    69***********99865544446666644456699*****966637.****98865 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.93
  NAD_binding_9 132 dg.qavlladgaslaadaVvLA 152
                    dg + +  +dg+ ++ad+Vv +
     CCE27898.1 660 DGpASIESEDGTVVTADNVVCT 681
                    442578899**********977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1079 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 6995.52
//
Query:       CCE27899.1  [L=303]
Description: probable ATP3-F1F0-ATPase complex, F1 gamma subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-79  266.4   6.1    4.5e-79  266.1   6.1    1.0  1  ATP-synt  ATP synthase


Domain annotation for each model (and alignments):
>> ATP-synt  ATP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.1   6.1   2.5e-83   4.5e-79       1     278 [.      33     299 ..      33     299 .. 0.89

  Alignments for each domain:
  == domain 1  score: 266.1 bits;  conditional E-value: 2.5e-83
                 THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHCEHHHHTTT..SSG.S.SSEEEEEEE--SSSSSTTHHHHHHHHHHHH CS
    ATP-synt   1 slkeikrRiksvkstkkItkAmkmVaaaklrkaqealeaarpyaekleevlealakreeeekhpllkeeekkvllivitSDrGLcGgfNsnvikkaekl 99 
                 +l+ei++R ks+k+++kIt++mk+Va++kl++aq+ ++++r+y+e+ +ev++a  ++      p  + e+kk l+iv++SD+GLcGg++s + ++++++
  CCE27899.1  33 TLREIDNRRKSIKNIQKITSTMKIVASTKLNRAQRTMTESRKYGETASEVFQAAETAV-----P--EVEQKKSLIIVCSSDKGLCGGVHSGLSRRIRAY 124
                 69**************************************************993322.....2..2367899***********************655 PP

                 HHHHHTTT.ET.EEEEESHHHHHHH.HH.SS.EHHTTCE-TS.S--HHHHHHHHHHHHSHHHTTSBSEEEEEEEEECCTSEEEEEEEEESST...HCS. CS
    ATP-synt 100 ieelkkeg.ev.klvvvGkkgreyf.kr.kvevqleftgvsk.kptfeeaseiaeeildlyeegeideveivynkfksaisqeptvekllplekeeekk 193
                 ++e      e  +lvvvG+k ++++ +     +q++f g++k  ptf++a++ia++++   +  ++  v+i+ynkf++a s+ept  + ++ +  +++ 
  CCE27899.1 125 ANE----TtEPfDLVVVGEKCKAQLlRTsPDAIQMSFAGIGKdIPTFADAQAIADQVVM--NCSDYTDVKILYNKFVNAQSYEPTFIQAFSEQAIAQSP 217
                 544....224459***********995537777888***9999**************86..66899*************************65554444 PP

                 .SSTSEESS.HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ATP-synt 194 ekseyefepdeeevleellpeylasliyrallesaasEqaaRmtaMdnAtknakelidkltleyNraRQaaITqELieIvsGaeA 278
                 + s+  fe + ee l++l +++la+++y al+e +a+E +aR++aMdnA+kna+e+i+k++++yNr+RQa+IT EL+eI++Ga+A
  CCE27899.1 218 NISA--FEVE-EEALANLREYSLANNLYWALAEGHACEISARRNAMDNASKNAGEMIQKYQILYNRTRQAVITGELVEIITGATA 299
                 4444..4444.77**********************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       998  (0.055664); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2170.99
//
Query:       CCE27900.1  [L=897]
Description: probable TOP1-DNA topoisomerase I [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-96  322.4   3.6    1.2e-96  322.4   3.6    2.0  2  Topoisom_I      Eukaryotic DNA topoisomerase I, catalytic cor
    6.4e-93  310.1   2.8    6.4e-93  310.1   2.8    3.4  3  Topoisom_I_N    Eukaryotic DNA topoisomerase I, DNA binding f
    4.6e-31  106.6   0.6    2.1e-30  104.4   0.6    2.3  1  Topo_C_assoc    C-terminal topoisomerase domain
  ------ inclusion threshold ------
      0.018   15.1   0.2        1.7    8.8   0.0    2.9  2  CagY_I          CagY type 1 repeat
        6.1    7.2   9.9         11    6.3   0.2    3.4  4  Peptidase_M3_N  Oligopeptidase F


Domain annotation for each model (and alignments):
>> Topoisom_I  Eukaryotic DNA topoisomerase I, catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.4   3.6  3.4e-100   1.2e-96       2     231 ..     485     715 ..     484     716 .. 0.98
   2 ?   -3.7   0.8       1.6   5.7e+03     199     219 ..     753     774 ..     746     802 .. 0.64

  Alignments for each domain:
  == domain 1  score: 322.4 bits;  conditional E-value: 3.4e-100
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--------.-TTS-----GGG-BGGGEEE-TT.SEEEEEEE-GGG- CS
  Topoisom_I   2 sklkgekdfkKYekarkLkkvvekiredykkklkskeilekqlatavylidklaLrvGnek.eeeeadtvGccsLrvehvklsekektitldFlGKdsi 99 
                 s++kg++dfkK+ekar+Lkk++ kir++y+++lks+ ++++q+ata+ylid+laLr+Gnek +e+eadtvGccsL++eh++l+++ +++t+dFlGKdsi
  CCE27900.1 485 SDVKGQSDFKKFEKARELKKHIGKIRKEYTRELKSEIMADRQRATAMYLIDQLALRAGNEKdTENEADTVGCCSLKYEHITLQPP-DKVTFDFLGKDSI 582
                 899*********************************************************************************9.************* PP

                 EEEEEEE--HHHHHHHHHHHTT.--TTSBTTTT--HHHHHHHHTTTSTT--TTHHHHHHHHHHHHHHHHH..--------TTHHHHHHHHHHHHHHHHH CS
  Topoisom_I 100 ryfntvkvdkqvyknlkifckk.kkkgeevFdkintsklNkyLkelmegLsAKvFRTYnASitlqeqLkklekievdesnvaekikayneAnreVAilc 197
                 ry++t +v++qv+knlk+f+k  k++g+++Fd+++ts+lNk+L ++m+gL+AKvFRTYnAS+t+++ Lk+l +   +++++aek+k yn++nr+VAilc
  CCE27900.1 583 RYNETAHVSPQVFKNLKLFKKPpKTDGDDLFDRLTTSQLNKHLASYMPGLTAKVFRTYNASYTMSTLLKELASDPRSKGTIAEKVKLYNDCNRKVAILC 681
                 *********************99************************************************9888899********************* PP

                 T-EE-XXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS
  Topoisom_I 198 nhqrsvpkqheksmeklkkkiealkedikelkke 231
                 nh+r+v   he++m+k++++i+ l+++++++kk+
  CCE27900.1 682 NHKRTVGAGHEQQMQKMSDRIKGLRYQKWRTKKM 715
                 ****************************999986 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.6
                 -EE-X.XXXXXXXXXXXXXXXX CS
  Topoisom_I 199 hqrsv.pkqheksmeklkkkie 219
                  qr+  +k++ek  ekl+++ e
  CCE27900.1 753 EQRTKiTKKFEKDNEKLQANKE 774
                 4555445556666555554433 PP

>> Topoisom_I_N  Eukaryotic DNA topoisomerase I, DNA binding fragment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.1   2.8   1.8e-96   6.4e-93       1     213 []     254     481 ..     254     481 .. 0.95
   2 ?   -0.8   0.8      0.25   9.1e+02      86     124 ..     496     534 ..     486     545 .. 0.64
   3 ?   -3.6   5.2       1.8   6.6e+03      61      95 ..     739     775 ..     717     822 .. 0.49

  Alignments for each domain:
  == domain 1  score: 310.1 bits;  conditional E-value: 1.8e-96
                   ---S-EE----B---------TT--EEETTEEE---HHHHHHHHHHHHTTT...SSGGG-HHHHHHHHHHHHHHHHHTT-..........---GGGE CS
  Topoisom_I_N   1 vkWktLehnGvlfppeYeplpknvklkydgkpvkLspeaEEvatfyaamle...tdyakkevFqknffkdfkkvlkekek..........ikelekc 84 
                   +kW+tLehnGvlf+peYeplpkn+kl+ydgkpv+Ls+eaEE+atf+ am++   +++ ++++F++nff+df++ +k++            i +l+kc
    CCE27900.1 254 IKWTTLEHNGVLFAPEYEPLPKNIKLIYDGKPVTLSKEAEEIATFWVAMMTpasSHHLDNPIFRTNFFNDFSEFVKKTGGaldkdgnkvsIDSLDKC 350
                   69***********************************************97655779******************9888878888888889****** PP

                   E-HHHHHHHHHHHHHHT..T-----HHHHHHHHHHHHHHHHEEEETTEEEEEE--B----EE----TT-TTTT-EE----GGG-EEE--SSS----- CS
  Topoisom_I_N  85 dFskikeylekekekkk..altkeekkklkeekekleekygyalldgrkekvgnfrvepPgLfrgrGehpktGklkkrvlpedvtiNigkdakvPep 179
                   dFski++++ +++e+ k  +l+keek+++k++k++ e++y ++++dgrk+kvgnfrvepP+LfrgrGehpktG++k+rv+pe++tiNigkdakvPep
    CCE27900.1 351 DFSKIYNHWLAKTEATKtkNLSKEEKEAAKAKKDAFEAPYLHCMWDGRKQKVGNFRVEPPSLFRGRGEHPKTGRVKTRVFPEQITINIGKDAKVPEP 447
                   ********9887765443399**************************************************************************** PP

                   STT---SEEE--TT---SEEEE-TTT--EEEEEE CS
  Topoisom_I_N 180 paghkWkevvhdntvtwlaswkeningqvkyvmL 213
                   paghkWk+v+hd+++twla+w+ening++kyvmL
    CCE27900.1 448 PAGHKWKAVQHDQKATWLAMWQENINGAYKYVML 481
                   *********************************8 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.25
                   -HHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHE CS
  Topoisom_I_N  86 Fskikeylekekekkkaltkeekkklkeekekleekygy 124
                   F+k  e  ++  + +k+ t+e k+++ ++++++++ y +
    CCE27900.1 496 FEKARELKKHIGKIRKEYTRELKSEIMADRQRATAMYLI 534
                   444444555555677788888888888888877777754 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1.8
                   HHHHHHHHHHHH..HHTT--.--GGGEE-HHHHHHHHH CS
  Topoisom_I_N  61 qknffkdfkkvl..kekeki.kelekcdFskikeylek 95 
                     n++k+ ++ l  ++++ki k++ek d +k+++  ek
    CCE27900.1 739 DMNWVKEHQQFLieEQRTKItKKFEK-DNEKLQANKEK 775
                   45666677776643222222122222.33333322222 PP

>> Topo_C_assoc  C-terminal topoisomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.6   5.9e-34   2.1e-30       1      70 []     825     897 .]     825     897 .] 0.95

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 5.9e-34
  Topo_C_assoc   1 kekikklklqlkdkeenkevaLgtSkinYlDPRitvawckkhdvpiekiFsktlleKfaWAme.vde..dfkf 70 
                   +e++k l++q++d+e nkevaLgtSkinY+DPR+tv+++kk+dvpiek+Fsk+l+eKf+WA++ v++  d++f
    CCE27900.1 825 DERVKILETQADDREGNKEVALGTSKINYIDPRLTVVFSKKFDVPIEKFFSKALREKFKWAIKsVEDvdDWEF 897
                   699************************************************************7775668887 PP

>> CagY_I  CagY type 1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00047       1.7      35      58 ..     306     328 ..     285     333 .. 0.84
   2 ?    2.9   0.1     0.034   1.2e+02      20      38 ..     363     381 ..     360     399 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00047
      CagY_I  35 ssdhhldnPtetqtnfdGdkseei 58 
                 +s hhldnP   +tnf  d se +
  CCE27900.1 306 ASSHHLDNPI-FRTNFFNDFSEFV 328
                 689******8.5899999999966 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.034
      CagY_I  20 teanhfenllkeskessdh 38 
                 tea    nl ke ke++  
  CCE27900.1 363 TEATKTKNLSKEEKEAAKA 381
                 9999***********9765 PP

>> Peptidase_M3_N  Oligopeptidase F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0037        13      18      46 ..     268     296 ..     262     302 .. 0.89
   2 ?    6.3   0.2    0.0032        11      21      57 ..     354     390 ..     347     391 .. 0.92
   3 ?   -3.2   0.3       3.1   1.1e+04      27      37 ..     496     506 ..     493     513 .. 0.81
   4 ?   -3.5   0.9       3.7   1.3e+04      28      50 ..     752     774 ..     744     781 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0037
  Peptidase_M3_N  18 pelaeyrfyleeilrqkphtLseeeEklL 46 
                     pe ++  ++++ i++ kp tLs+e E++ 
      CCE27900.1 268 PEYEPLPKNIKLIYDGKPVTLSKEAEEIA 296
                     77788888999****************96 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0032
  Peptidase_M3_N  21 aeyrfyleeilrqkphtLseeeEklLaelsevggaaw 57 
                     + y ++l ++ + k   Ls+ee +   ++ ++++a++
      CCE27900.1 354 KIYNHWLAKTEATKTKNLSKEEKEAAKAKKDAFEAPY 390
                     569************************9999999986 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.1
  Peptidase_M3_N  27 leeilrqkpht 37 
                     +e+ ++ k+h+
      CCE27900.1 496 FEKARELKKHI 506
                     78899999997 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 3.7
  Peptidase_M3_N  28 eeilrqkphtLseeeEklLaels 50 
                     ee + +   +  ++ Ekl a++ 
      CCE27900.1 752 EEQRTKITKKFEKDNEKLQANKE 774
                     44444444444445555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1857  (0.103575); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.26s 00:00:01.08 Elapsed: 00:00:00.42
# Mc/sec: 6396.03
//
Query:       CCE27901.1  [L=385]
Description: related to CRH1-family of putative glycosidases might exert a common role in cell wall organization [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-41  140.4   0.1    6.9e-41  139.7   0.1    1.3  1  Glyco_hydro_16  Glycosyl hydrolases family 16
  ------ inclusion threshold ------
        0.1   11.4   0.2       0.14   11.0   0.2    1.1  1  DUF5382         Family of unknown function (DUF5382)


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   0.1   7.7e-45   6.9e-41      16     177 .]      67     226 ..      55     226 .. 0.91

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 7.7e-45
                     EETTSEEEEEEEEEE.EEEEEECCEESSEEEEEEEE---STTEEEEEEEETGGTSTTEEEEEEEETT-TTEEEEEEEBTTBSGE..EEEEETSS- CS
  Glyco_hydro_16  16 vengetltltldkes.gsrikskksflyGkvearikaaksaGvvtafylssedekahdEiDiEflGndtgkvqtnvygkGkgkr..ekrlslwfd 107
                     +++ ++++lt+++   +++++s + +++G+ve++++aa +aG+v++++l s   ++ dEiD+E+lG+d+++vqtn++gkG++++  + r++ +  
      CCE27901.1  67 YSTTNGVSLTVSHPGdAPQLQSLFAIMFGRVEITMRAAPGAGIVSSLVLES---DDLDEIDMEWLGSDPDEVQTNYFGKGQTTTynRGRFHAVPG 158
                     44445799999997669********************************99...89***************************7779999***** PP

                     TTTS-EEEEEEEETTEEEEEETTEEEEEEESSHHHHT.--EESEEEEEEEEEEBSHHHSSE-EEEEEEEE CS
  Glyco_hydro_16 108 ptedfHtYaieWtpdkikfyVDgkpvrtltkkeaeevkyPqftpmkvavslwpgsdwateqgkvkidwar 177
                     +++ + tY++eWt+++++++ Dgk+ r+l+ ++a e++yPq tpm+v+++ w+g+d  t+ +  +++war
      CCE27901.1 159 TQTRWITYSVEWTRESVVWMADGKVLRELKARDAAENQYPQ-TPMQVKFGAWAGGDPGTNAA-GTVQWAR 226
                     **********************************999****.*************8776653.5999986 PP

>> DUF5382  Family of unknown function (DUF5382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   1.6e-05      0.14     221     270 ..     146     195 ..     136     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.6e-05
     DUF5382 221 rkysnhkFevvkksqdleitfsvTytaengtvfrDtyrfrvkkardkvpd 270
                  +y   +F+ v   q  +it+sv +t e+ + + D   +r  kard   +
  CCE27901.1 146 TTYNRGRFHAVPGTQTRWITYSVEWTRESVVWMADGKVLRELKARDAAEN 195
                 6899999*****99**************************9999976543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3184.56
//
Query:       CCE27902.1  [L=576]
Description: related to cutinase G-box binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-14   52.1  18.5      1e-06   28.9   0.5    3.8  3  zf-C2H2       Zinc finger, C2H2 type
    1.1e-06   28.9  17.8     0.0011   19.7   0.4    3.4  3  zf-C2H2_4     C2H2-type zinc finger
    1.7e-06   28.2  13.6    7.4e-06   26.2   5.2    3.7  3  zf-H2C2_2     Zinc-finger double domain
    0.00069   19.8   5.9       0.18   12.1   1.7    2.8  2  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
      0.013   15.8   9.6       0.15   12.5   1.3    3.0  2  zf-met        Zinc-finger of C2H2 type
       0.02   14.5   5.0       0.11   12.1   0.1    2.5  2  zf_C2H2_ZHX   Zinc-fingers and homeoboxes C2H2 finger domain
       0.11   12.4   0.2       0.11   12.4   0.2    2.8  2  zf-LYAR       LYAR-type C2HC zinc finger
       0.98    9.6   6.0       0.42   10.8   2.5    2.2  2  zf-UBR        Putative zinc finger in N-recognin (UBR box)
        1.7    8.6   7.0        0.8    9.6   0.7    2.8  3  zf-trcl       Probable zinc-ribbon domain
          2    8.3  10.0        5.8    6.8   0.0    2.6  2  zf-C2H2_11    zinc-finger C2H2-type
          3    8.5   9.2         69    4.1   6.7    2.9  2  zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
        4.5    7.0   7.1        6.4    6.5   7.1    1.2  1  RR_TM4-6      Ryanodine Receptor TM 4-6
        4.6    5.4  12.5        6.7    4.9  12.5    1.1  1  CDC45         CDC45-like protein
          6    7.0   8.4         16    5.7   1.7    2.4  2  Elf1          Transcription elongation factor Elf1 like
        6.9    7.2  11.7          8    7.0   0.6    2.8  2  zf-C2HE       C2HE / C2H2 / C2HC zinc-binding finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.037        44       5      20 ..      44      59 ..      35      61 .. 0.91
   2 !   22.3   9.7     1e-07   0.00012       1      23 []     450     473 ..     450     473 .. 0.98
   3 !   28.9   0.5   8.4e-10     1e-06       1      23 []     479     501 ..     479     501 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.037
                TTTEEESSHHHHHHHH CS
     zf-C2H2  5 dCgksFkrksnLkrHi 20
                +C+++ +++s L +H 
  CCE27902.1 44 VCSRPGSSSSTLYSHT 59
                8**************7 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 1e-07
                 EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                 +kC++C+++F+r+++LkrH r+ H
  CCE27902.1 450 FKCHICNRRFRRQEHLKRHHRSlH 473
                 8********************999 PP

  == domain 3  score: 28.9 bits;  conditional E-value: 8.4e-10
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++C+dCgk+F+r++nL +H rtH
  CCE27902.1 479 FECTDCGKKFSRSDNLAQHARTH 501
                 89********************9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       7.1   8.5e+03       4      19 ..      43      58 ..      42      61 .. 0.80
   2 !   14.4   8.2   4.4e-05     0.052       1      24 []     450     473 ..     450     473 .. 0.94
   3 !   19.7   0.4   8.9e-07    0.0011       1      23 [.     479     501 ..     479     502 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 7.1
   zf-C2H2_4  4 piCgksFsskkaLlrH 19
                p+C+++ ss+++L +H
  CCE27902.1 43 PVCSRPGSSSSTLYSH 58
                6788887888889988 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.4e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkthH 24 
                 fkC+iC+++F+++++L+rH ++ H
  CCE27902.1 450 FKCHICNRRFRRQEHLKRHHRSLH 473
                 8*****************999887 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 8.9e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f+C+ Cgk Fs++++L +H +th
  CCE27902.1 479 FECTDCGKKFSRSDNLAQHARTH 501
                 89********************9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2     0.038        46      13      25 ..     448     460 ..     442     461 .. 0.82
   2 !   26.2   5.2   6.2e-09   7.4e-06       1      25 [.     464     489 ..     464     490 .. 0.93
   3 ?    0.6   0.0      0.76   9.1e+02       1      11 [.     493     503 ..     493     505 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.038
   zf-H2C2_2  13 kpyeCplCdkaFk 25 
                 k ++C  C+ +F 
  CCE27902.1 448 KTFKCHICNRRFR 460
                 66********995 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 6.2e-09
   zf-H2C2_2   1 nLrrHirk.HtgekpyeCplCdkaFk 25 
                 +L+rH r+ Ht++kp+eC  C+k+F+
  CCE27902.1 464 HLKRHHRSlHTQDKPFECTDCGKKFS 489
                 79****977****************8 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.76
   zf-H2C2_2   1 nLrrHirkHtg 11 
                 nL +H r+H g
  CCE27902.1 493 NLAQHARTHSG 503
                 7999*****87 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   1.7   0.00015      0.18       2      20 ..     450     468 ..     449     472 .. 0.91
   2 !    8.8   0.1    0.0016       1.9       2      23 ..     479     500 ..     478     502 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
                  CBBTTTTBBBSSHHHHHCC CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnH 20 
                  f C +C++ F  ++ l+ H
   CCE27902.1 450 FKCHICNRRFRRQEHLKRH 468
                  99***************** PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0016
                  CBBTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkS 23 
                  f+C  C K F+ + +l +H ++
   CCE27902.1 479 FECTDCGKKFSRSDNLAQHART 500
                  99*****************665 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.3   0.00012      0.15       1      19 [.     450     468 ..     450     471 .. 0.95
   2 ?    8.1   0.3    0.0029       3.5       1      21 [.     479     499 ..     479     501 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
      zf-met   1 fyCelCnvtfnsesqlksH 19 
                 f C +Cn++f  + +lk H
  CCE27902.1 450 FKCHICNRRFRRQEHLKRH 468
                 78****************9 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0029
      zf-met   1 fyCelCnvtfnsesqlksHlq 21 
                 f+C  C ++f+   +l +H +
  CCE27902.1 479 FECTDCGKKFSRSDNLAQHAR 499
                 79*****************65 PP

>> zf_C2H2_ZHX  Zinc-fingers and homeoboxes C2H2 finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   1.8     0.047        56       4      29 ..     449     474 ..     444     479 .. 0.88
   2 ?   12.1   0.1   9.3e-05      0.11       4      36 ..     478     509 ..     475     515 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.047
  zf_C2H2_ZHX   4 sFvCveCsfsakkfegLalHNarsHp 29 
                  +F C  C+   ++ e L+ H    H+
   CCE27902.1 449 TFKCHICNRRFRRQEHLKRHHRSLHT 474
                  699*****************999997 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 9.3e-05
  zf_C2H2_ZHX   4 sFvCveCsfsakkfegLalHNarsHpgetnftl 36 
                   F C++C+    + ++La+H ar+H+g   +++
   CCE27902.1 478 PFECTDCGKKFSRSDNLAQH-ARTHSGGGAIVM 509
                  699*****************.9***98766655 PP

>> zf-LYAR  LYAR-type C2HC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.5      0.69   8.3e+02       3      18 ..     452     468 ..     450     470 .. 0.69
   2 ?   12.4   0.2   9.6e-05      0.11       1      18 [.     479     497 ..     479     499 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.69
     zf-LYAR   3 CiDCsktFdg.deykaH 18 
                 C  C+ +F++ +  k H
  CCE27902.1 452 CHICNRRFRRqEHLKRH 468
                 666******94444555 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 9.6e-05
     zf-LYAR   1 fsCiDCsktFdg.deykaH 18 
                 f C DC+k+F++ d+  +H
  CCE27902.1 479 FECTDCGKKFSRsDNLAQH 497
                 77**********8888888 PP

>> zf-UBR  Putative zinc finger in N-recognin (UBR box)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       5.1   6.1e+03      47      60 ..     414     426 ..     400     432 .. 0.65
   2 ?   10.8   2.5   0.00035      0.42      22      59 ..     450     488 ..     440     496 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.1
      zf-UBR  47 krnggvCdCGdeea 60 
                 ++ + +C+ Gd +a
  CCE27902.1 414 NS-NACCEDGDASA 426
                 33.48999888775 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00035
      zf-UBR  22 etsviCeeCfkaskH.eghelvelstkrng.gvCdCGdee 59 
                  ++ iC++ f++++H + h+  +l+t+++   + dCG++ 
  CCE27902.1 450 FKCHICNRRFRRQEHlKRHHR-SLHTQDKPfECTDCGKKF 488
                 5799***********777776.8888888856669**975 PP

>> zf-trcl  Probable zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.5     3e+03      18      25 ..      27      34 ..      24      43 .. 0.82
   2 ?    1.0   0.3      0.34     4e+02       3      14 ..     448     459 ..     447     460 .. 0.90
   3 ?    9.6   0.7   0.00067       0.8       1      14 [.     475     488 ..     475     490 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.5
     zf-trcl 18 ageQeFya 25
                a++Q+F a
  CCE27902.1 27 AQQQKFHA 34
                89****87 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.34
     zf-trcl   3 ktltCkdCgaef 14 
                 kt++C+ C++ f
  CCE27902.1 448 KTFKCHICNRRF 459
                 89******9988 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00067
     zf-trcl   1 eDktltCkdCgaef 14 
                 +Dk++ C+dCg++f
  CCE27902.1 475 QDKPFECTDCGKKF 488
                 7***********98 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   7.0      0.22   2.6e+02       3      25 ..     448     470 ..     447     473 .. 0.89
   2 ?    6.8   0.0    0.0049       5.8       6      23 ..     480     497 ..     478     500 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.22
  zf-C2H2_11   3 stcqCleCGlcftSqlsLsRHlf 25 
                  t++C  C + f  q  L+RH +
  CCE27902.1 448 KTFKCHICNRRFRRQEHLKRHHR 470
                 599******************87 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0049
  zf-C2H2_11   6 qCleCGlcftSqlsLsRH 23 
                  C++CG +f+ +  L  H
  CCE27902.1 480 ECTDCGKKFSRSDNLAQH 497
                 5*********88888877 PP

>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   6.7     0.058        69      72     125 ..     419     473 ..     331     474 .. 0.83
   2 ?    3.5   0.0     0.093   1.1e+02      33      53 ..     479     499 ..     474     514 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.058
  zf-C2H2_3rep  72 sasedssqklelsksasve.nnsenesgvrkfvcrfcGlkfdllpdlGrhhqaah 125
                   ++  d+s+++ +++++    ++s  e+ ++ f c++c  +f     l rhh++ h
    CCE27902.1 419 CEDGDASANSAPTQANRRGrKQSLTEDPSKTFKCHICNRRFRRQEHLKRHHRSLH 473
                   334445555555554444325666778899*********************9988 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.093
  zf-C2H2_3rep  33 lqcipcgshfgnaeelwlhvl 53 
                   ++c  cg +f+ +++l +h  
    CCE27902.1 479 FECTDCGKKFSRSDNLAQHAR 499
                   578888888888888888864 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.1    0.0054       6.4      37     155 ..     326     442 ..     298     467 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0054
                 XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX.. CS
    RR_TM4-6  37 eeeeedllsdvfgldlkkeggqykvvakkseagLgDlseteaeespt......pelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekeke 129
                  e+eed  +d    ++k+ +g+   +++ ++++++ +    a+ ++       +++++  ++++e e++ ee++e ++e++++  +   +++      +
  CCE27902.1 326 VEAEEDAHKDK--RHKKHVSGSGSSIHHSNHKSFSSFLPIMAAAAADngqsssSDERRDDQNNHEREDQSEEQREDQSEDHRDDASPAPSNS------N 416
                 45566666663..4455555666778888888888888888877754444432222222223333333333333333333222211111111......1 PP

                 ........XXXXXXXXXXXXXXXXXX CS
    RR_TM4-6 130 eeekeseeeeeekkkkkkakskkkee 155
                 +  ++  ++ ++++ +++++ +k+  
  CCE27902.1 417 ACCEDGDASANSAPTQANRRGRKQSL 442
                 11122222222222222222222222 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  12.5    0.0056       6.7     134     221 ..     377     470 ..     348     483 .. 0.42

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0056
       CDC45 134 eede..eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrse.............psakklrrqlkkerrkyeavle 217
                 ++++  ++++++ +d++ee++e+++e+++++ +   ++++   +d + + +++ +++++r r++                        ++r + ++ l+
  CCE27902.1 377 SDERrdDQNNHEREDQSEEQREDQSEDHRDDASPAPSNSNACCEDGDASANSAPTQANRRGRKQsltedpsktfkchI---------CNRRFRRQEHLK 466
                 111111222222222223333333333333333333333332333333333333444444444444454444433331.........333333333333 PP

       CDC45 218 kyys 221
                 ++++
  CCE27902.1 467 RHHR 470
                 3333 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.9     0.025        29      10      29 ..     438     457 ..     431     460 .. 0.74
   2 ?    5.7   1.7     0.013        16       3      30 ..     460     487 ..     457     499 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.025
        Elf1  10 rkkkkkkklptkFdCpfCnh 29 
                 rk+  ++  +++F+C  Cn 
  CCE27902.1 438 RKQSLTEDPSKTFKCHICNR 457
                 4555566699********97 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.013
        Elf1   3 RkkkakkrkkkkkkklptkFdCpfCnhe 30 
                 R+++  kr+ ++ ++ ++ F+C  C+++
  CCE27902.1 460 RRQEHLKRHHRSLHTQDKPFECTDCGKK 487
                 555666789999999**********998 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   4.9      0.09   1.1e+02      35      57 ..     447     468 ..     384     471 .. 0.84
   2 ?    7.0   0.6    0.0067         8      34      49 ..     475     490 ..     469     501 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.09
     zf-C2HE  35 ktpLkCtrCganfgnkfpkLKeH 57 
                 ++ +kC+ C+ + ++   +LK+H
  CCE27902.1 447 SKTFKCHICN-RRFRRQEHLKRH 468
                 5789******.888999****99 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0067
     zf-C2HE  34 lktpLkCtrCganfgn 49 
                  ++p++Ct Cg++f +
  CCE27902.1 475 QDKPFECTDCGKKFSR 490
                 579********88765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1202  (0.0670422); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 4346.95
//
Query:       CCE27903.1  [L=869]
Description: uncharacterized protein CPUR_01377 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-23   83.9   0.0    3.3e-17   62.7   0.0    3.6  2  Diphthami_syn_2  Diphthamide synthase
    4.2e-11   42.9   0.0    4.1e-06   26.8   0.0    2.7  2  Ribonuc_L-PSP    Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Diphthami_syn_2  Diphthamide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.1e-05     0.097       2      35 ..       7      41 ..       6      47 .. 0.85
   2 !   62.7   0.0   3.7e-21   3.3e-17      38     199 ..      91     295 ..      82     306 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.1e-05
  Diphthami_syn_2  2 kvavlysGGkDsilaLykalke.sevesLvsvise 35
                      v++l+sGGkDs ++L + +++ + +  L ++++ 
       CCE27903.1  7 NVIALISGGKDSFYSLLHCIHHgHHIVALANLFPA 41
                     589*************9999887888888888765 PP

  == domain 2  score: 62.7 bits;  conditional E-value: 3.7e-21
  Diphthami_syn_2  38 esymfhvvnvhlvellaesvGiplikletaGeeekevedLkgtlkkld.........................veavviGaieseyqksrierv 106
                      +s+m+ +v  ++++l ae+ G+pl ++ + G   k+ +d   +  kl                          ++a+++Gai s yq++r+e+v
       CCE27903.1  91 NSFMYQTVGHEVISLYAEATGLPLYRQPILGGAVKHERDYDYNSSKLPssssspdetesmlsllravkahhpeANALCSGAILSTYQRTRVESV 184
                      688888888889999999999988887777655555444444444443334444455555555556668888899******************* PP

  Diphthami_syn_2 107 CrelGlksvaPLWk............kdpeelleeiveekfevivvavkaegldeslLGrridk.klidelkklsekygidka...gegGeaet 184
                        +lGl ++  LWk            +d  +ll  + +++ +++++ v+  gl+e+ L  r++  k +  +k    ++g  +    gegGe+et
       CCE27903.1 185 ALRLGLTPLSYLWKypilppgpdvhlADEAQLLRDMADAGLDARIIKVASAGLEEKHLWERVTSeKGVSRIKASLRRFGFTEGatlGEGGEFET 278
                      *************855444444444446668899999*********************999975267************97532339******* PP

  Diphthami_syn_2 185 lvlDaP..lfkkrlevk 199
                      lvlD+P  lf+kr+ v 
       CCE27903.1 279 LVLDGPdvLFQKRICVP 295
                      ******999*****885 PP

>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   4.6e-10   4.1e-06      39     109 ..     407     477 ..     400     487 .. 0.89
   2 !   13.1   0.0   7.8e-06      0.07       4      47 ..     511     569 ..     509     585 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 4.6e-10
                    SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--EEEEEE-SBSG.G CS
  Ribonuc_L-PSP  39 gdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaParsaveVaaLp.k 109
                    ++++ +t  + en++a L++ +++  +v  v v+l d+ df ++ne y+++f+   ++P r ++ +  L  k
     CCE27903.1 407 TSIQCETISIVENIRAFLSSEDLDPRNVSSVIVLLRDMGDFPQINEEYGKLFQRA-NPPSRITISCGDLLpK 477
                    5677788999*********************************************.7********9877524 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 7.8e-06
                    STTTSSS-BSEEE..........ETTEEEEEEE-SB-TTTSCB......-SSHHHHHHH CS
  Ribonuc_L-PSP   4 apaaaapYsqavk..........agnlvyvsGqlpldpetgelv.....egdveeqtrq 47 
                    apa ++pYsqa++          + ++v+v+Gq+pl p++++l      e+++++q   
     CCE27903.1 511 APANIGPYSQAIEtaitaggrptTLRTVHVAGQIPLVPDYMTLPmvstpETTAQQQIVL 569
                    78999******9988877666666689***********666654303122333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (869 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 6018.59
//
Query:       CCE27904.1  [L=264]
Description: uncharacterized protein CPUR_01378 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-05   24.5   0.0    2.3e-05   24.2   0.0    1.1  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.3e-09   2.3e-05      29     172 ..      11     160 ..       2     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.3e-09
       RVT_2  29 kevkykarlvaqGfsqkagedydevfaPvirldsvrLllala...aeeelvvhqldvdsafLna..eldeevyvkqPpGfeidreeekvykLnkslyGl 122
                 ++   k+r v+ G +      y  + +P ++  + rL +ala   ++ + +++  d+  a++++   l+  +  k P        ++ v+ + k lyGl
  CCE27904.1  11 DDPIEKSRFVICGDRDDEKL-YFLTQSPTLQRAAQRLAVALApslSTRKIILFARDIIQAYVQSltSLNRVIIAKLPREIAHLYPPDTVILVIKPLYGL 108
                 55667999999998876655.56689***************95545678999**********98334566688999999999999************** PP

       RVT_2 123 kqapllWn.ekidkvLkklgferseaesGlyvrgtgegk.livalyvddlli 172
                   +++ W  +  +   +kl++e+s+  + l + +  +g   i+++  dd l 
  CCE27904.1 109 AESGTHWWsTYFKYHCEKLKMEPSTFDQCLLITTAESGCfGIIGIQTDDTLG 160
                 **998765166788899***************99999986699*****9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2135.51
//
Query:       CCE27905.1  [L=638]
Description: uncharacterized protein CPUR_01379 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-07   30.2   0.1    7.4e-07   28.9   0.1    1.6  1  gag_pre-integrs  GAG-pre-integrase domain
  ------ inclusion threshold ------
      0.094   13.3   0.6       0.31   11.6   0.2    2.1  2  MatP             MatP N-terminal domain
       0.43   10.7   3.2        6.2    7.0   3.2    2.6  1  Integrase_H2C2   Integrase zinc binding domain


Domain annotation for each model (and alignments):
>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   1.2e-10   7.4e-07      21      64 ..     540     586 ..     519     588 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1.2e-10
  gag_pre-integrs  21 kssinlWHrRLGHpsfsrlkkLfk...kgllpglkisksevCeaCql 64 
                      +s+i++ HrR+GHps  rl+kL k   +++   + ++ s++C+ Cql
       CCE27905.1 540 ESEIRRSHRRFGHPSIARLTKLLKsagEDVTTTMVEKISRKCHQCQL 586
                      68999******************95555556666666699******8 PP

>> MatP  MatP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.85   5.1e+03       8      73 ..      17      83 ..      13      90 .. 0.70
   2 ?   11.6   0.2   5.1e-05      0.31      36      79 ..      90     133 ..      66     136 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.85
                HHHHHHHHHHHHHHHTT---BS-SSHHHHHHHHHHHHTTTT-HHHH.HHHHHHHB-HHHHHHHHHHH CS
        MatP  8 leagWkwkYLvkkhregeeitryieksaaeeavqqllklenepekv.eeWikehmspelenklkqai 73
                 e   +w   +k   eg+ i   ++  +  ea + l++ e   ++v e++i+++ +++ +  +  ai
  CCE27905.1 17 VEHWSRWIETLKTTAEGQGIWYKVDPELPAEASDLLVEPEMPGNTVlEQYITDRTTENHTPTMLEAI 83
                5554578888888888888888888888778777777777766665246777777777666666555 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.1e-05
                 HHHHHHHHHTTTT-HHHHHHHHHHHB-HHHHHHHHHHHHHHHHH CS
        MatP  36 aeeavqqllklenepekveeWikehmspelenklkqairarrkr 79 
                  +ea +++ + e +  ++++Wi+++++p+l+     +ira   r
  CCE27905.1  90 HQEACRKFKAQEAKELALHKWIASTVNPSLHSSTLETIRAETER 133
                 67889999999999**************************7655 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.2     0.001       6.2      10      56 ..     543     588 ..     540     590 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.001
  Integrase_H2C2  10 lkeaHdsagHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrk 56 
                     +++ H   gH++i + +++l++     + ++ v+k+ ++C++Cq + 
      CCE27905.1 543 IRRSHRRFGHPSIARLTKLLKSAGEDVT-TTMVEKISRKCHQCQLHS 588
                     6788999999999999999987665444.8899***********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.22s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 4897.02
//
Query:       CCE27906.1  [L=266]
Description: uncharacterized protein CPUR_01380 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 2216.90
//
Query:       CCE27907.1  [L=223]
Description: uncharacterized protein CPUR_01381 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-22   79.5   1.9    1.9e-22   79.5   1.9    2.3  2  DUF202    Domain of unknown function (DUF202)
  ------ inclusion threshold ------
        0.2   11.1   0.5       0.25   10.8   0.5    1.2  1  Rax2      Cortical protein marker for cell polarity


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   1.9   2.1e-26   1.9e-22       1      67 [.      94     183 ..      94     184 .. 0.87
   2 ?    1.5   1.3     0.045     4e+02      46      60 ..     199     213 ..     185     221 .. 0.49

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 2.1e-26
      DUF202   1 rdglAnERTfLaWlRtslalialglallrffl.....................tgepsa.....lgkilglilivlgiltllvglvrylrrqr 67 
                 rd+lA ERTfLaWlRtsla++++g+a++++f+                     +   s+     lgk+lg+++++++iltll+g++ry+  q+
  CCE27907.1  94 RDHLALERTFLAWLRTSLAFASIGIAVTQLFRlntslsdtggsddpsfgsgssH---SNatlrrLGKPLGATFLGISILTLLLGARRYFVAQS 183
                 8************************************99999999988875431...223344469***********************9876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.045
      DUF202  46 ilivlgiltllvglv 60 
                 + +v++++++lv+lv
  CCE27907.1 199 LVAVVALAIMLVSLV 213
                 233333333333333 PP

>> Rax2  Cortical protein marker for cell polarity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   2.8e-05      0.25     147     185 ..     179     218 ..     113     221 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.8e-05
        Rax2 147 fssssdlkkkkkklsrgfVVlIg.LAlALgtvallgllgi 185
                 f  +s + ++k   srg VVl++  AlA+ +v+l++++ i
  CCE27907.1 179 FVAQSWVIRGKFPASRGTVVLVAvVALAIMLVSLVVVIVI 218
                 33344444788889********945999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1706.56
//
Query:       CCE27908.1  [L=684]
Description: related to HCS1-DNA helicase A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-57  195.7   0.1    2.3e-57  194.7   0.1    1.5  1  AAA_11           AAA domain
    1.2e-53  181.7   0.0      2e-53  181.0   0.0    1.4  1  AAA_12           AAA domain
    5.6e-11   42.5   0.0    7.9e-10   38.8   0.0    2.3  1  AAA_30           AAA domain
    1.8e-08   34.8   0.0    5.9e-08   33.2   0.0    1.9  1  AAA_19           AAA domain
      2e-06   27.8   0.0        1.3    8.7   0.0    3.3  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    6.4e-06   26.3   0.0    2.7e-05   24.3   0.0    1.9  1  ResIII           Type III restriction enzyme, res subunit
      7e-06   25.8   0.0    1.1e-05   25.1   0.0    1.4  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
    1.3e-05   24.6   0.1    8.2e-05   22.0   0.1    2.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
    8.9e-05   21.7   0.0    0.00018   20.7   0.0    1.4  1  T2SSE            Type II/IV secretion system protein
    9.5e-05   22.7   0.2     0.0011   19.3   0.2    2.6  1  AAA_22           AAA domain
    0.00012   21.9   0.1     0.0023   17.7   0.0    2.2  2  DEAD             DEAD/DEAH box helicase
     0.0014   18.5   0.0      0.028   14.3   0.0    2.3  1  Helicase_RecD    Helicase
     0.0015   19.0   0.1     0.0052   17.2   0.1    2.0  1  AAA_16           AAA ATPase domain
     0.0016   18.1   0.2      0.095   12.3   0.0    3.4  4  AAA_25           AAA domain
     0.0025   17.3   0.0      0.048   13.1   0.0    2.2  2  PhoH             PhoH-like protein
  ------ inclusion threshold ------
      0.018   15.1   0.2      0.075   13.0   0.0    2.1  2  Flavi_DEAD       Flavivirus DEAD domain
      0.022   15.2   0.1       0.16   12.4   0.0    2.4  2  AAA              ATPase family associated with various cellul
      0.027   13.4   0.0      0.045   12.7   0.0    1.2  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      0.033   13.9   0.1        0.2   11.3   0.1    2.2  1  AAA_24           AAA domain
       0.04   13.3   0.1        2.3    7.5   0.1    3.0  4  UvrD_C           UvrD-like helicase C-terminal domain
      0.051   13.3   0.0       0.11   12.2   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
      0.073   13.1   0.0       0.29   11.1   0.0    2.0  2  AAA_5            AAA domain (dynein-related subfamily)
       0.12   12.2   0.0       0.36   10.7   0.0    1.8  1  UvrD_C_2         UvrD-like helicase C-terminal domain
       0.15   11.6   0.0       0.28   10.7   0.0    1.3  1  4HB_MCP_1        Four helix bundle sensory module for signal 


Domain annotation for each model (and alignments):
>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.7   0.1   3.1e-60   2.3e-57       1     259 [.     207     421 ..     207     423 .. 0.96

  Alignments for each domain:
  == domain 1  score: 194.7 bits;  conditional E-value: 3.1e-60
      AAA_11   1 klndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeer 99 
                 +lndsq+eai+ al  +ei+li+GPPGtgKT+t++el+ ql          ++++riLvC+pSN +vD+++erl+          +k+ i+R+g+++ r
  CCE27908.1 207 TLNDSQKEAIRYALAAREIALIHGPPGTGKTHTLIELILQL---------VKRSQRILVCGPSNISVDNIVERLSP---------HKLPILRLGHPA-R 286
                 59***************************************.........7899**********************.........************.9 PP

      AAA_11 100 iseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaeesleeevldeaei 198
                   ++v ++sl+  +  + +     +++++++ e +++++++                  +k +  +err++    kel+ke++e+e++  ++++  +++
  CCE27908.1 287 LLPSVLNHSLDILTTTSEAG----AIVRDVRTEMDAKQASI------------------KKTRSGKERRQIYGDLKELRKEYRERERRCVANLVAGSKV 363
                 *********99999999866....799***99999999999..................677888999999**************************** PP

      AAA_11 199 vltTlsgagsklleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpatvi 259
                 vl+Tl+gag  +l++   +fdvviIDEA+qa+E+++++Pl+++ kk+v +GD+ QLp+t++
  CCE27908.1 364 VLATLHGAGGFQLRNE--DFDVVIIDEASQALEAQCWVPLLRA-KKAVCAGDHLQLPPTIK 421
                 ***************9..8**********************99.***************98 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.0   0.0   2.7e-56     2e-53       1     198 [.     468     679 ..     468     680 .. 0.90

  Alignments for each domain:
  == domain 1  score: 181.0 bits;  conditional E-value: 2.7e-56
      AAA_12   1 lerSlferllkke.kekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkrele....aqealeepleplvfidv..........ekseeekekke. 83 
                 le++lf+rll  + ++ +++L+tqYRmh++I+rfps+++Y++kL +ae v+ r l+      ++ e++ ep++fid+          e         + 
  CCE27908.1 468 LETTLFDRLLALHgPSIKKMLTTQYRMHESIMRFPSDELYESKLLAAEGVRARLLRdleyGVRDCEDTAEPVIFIDTqggdfperneE---------Qd 557
                 579********9999*********************************99999988888788999************77777644331.........02 PP

      AAA_12  84 ...............ksyiNeeEaelvvklvekllkkgseeerkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsn 167
                                +s++Ne+Ea+lv ++v +l+++g++   ++i+vitpY+aq+ +l +  + +++      +e ++vdgfQGrek+++++slVRsn
  CCE27908.1 558 dekgaprkgkgsllgESKSNEMEAALVRRHVGSLVEAGVRP--EDIAVITPYNAQLAILASLKE-QFPG-----VELGSVDGFQGREKEAVVVSLVRSN 648
                 223566778889*****************************..9*************9987655.6776.....9************************ PP

      AAA_12 168 ekkeigflkderrlNValTRAkskliivGnk 198
                 +++e+gfl ++rrlNVa+TR k++l ++G++
  CCE27908.1 649 PEGEVGFLGEKRRLNVAMTRPKRSLTVIGDS 679
                 *****************************97 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.1e-12   7.9e-10       1     130 [.     207     418 ..     207     431 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.1e-12
      AAA_30   1 elnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLae..........elgieastiakllkrlk........ 81 
                 +ln++Q++a++ +l+ ++ +a+++Gp+GtGKt++l +l   + ++ +r++++ p++   +++ e           lg +a+ + ++l+           
  CCE27908.1 207 TLNDSQKEAIRYALAARE-IALIHGPPGTGKTHTLIELILQLVKRSQRILVCGPSNISVDNIVErlsphklpilRLGHPARLLPSVLNH-Sldilttts 303
                 69*************997.*************999999777777778**************8875666666666666777777777733.247888888 PP

      AAA_30  82 .....................................................................grarlepg..tllivDEagmvdtkqlaall 109
                                                                                      g  +l+++  +++i+DEa+ +  +q    l
  CCE27908.1 304 eagaivrdvrtemdakqasikktrsgkerrqiygdlkelrkeyrererrcvanlvagskvvlatlhgagG-FQLRNEdfDVVIIDEASQALEAQCWVPL 401
                 888888888999999999999999999*****************************************63.45544448*********99555554444 PP

      AAA_30 110 kaaekagakvilvGDerQlas 130
                  +a+k     +++GD+ Ql++
  CCE27908.1 402 LRAKK----AVCAGDHLQLPP 418
                 44433....699******997 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   7.9e-11   5.9e-08       1     143 [.     212     418 ..     212     421 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 7.9e-11
      AAA_19   1 qreave..alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.....................atTiHrla 76 
                 q+ea++   +++++ l+ ++pGtGKT++l + +  lv++     ++il++ + + +++++ erl+  +++                             
  CCE27908.1 212 QKEAIRyaLAAREIALIHGPPGTGKTHTLIELILQLVKRS----QRILVCGPSNISVDNIVERLSPHKLPilrlghparllpsvlnhsldiL------- 299
                 88999773455677889999************99999999....78******************8888887777777777776666666652....... PP

      AAA_19  77 l.........................................................ldfddlltealelle....eaeeekklqeee..llivDEfq 112
                 +                                                         +      +  l+ l+          +l++e+  ++i+DE++
  CCE27908.1 300 TttseagaivrdvrtemdakqasikktrsgkerrqiygdlkelrkeyrererrcvanlV---AGSKVVLATLHgaggF-----QLRNEDfdVVIIDEAS 390
                 04444445799999999999999999999999999999999999888888888875431...3333344455543321.....333333369*****98 PP

      AAA_19 113 dvd..elqyrLlkallgekkklllvGDpdQliy 143
                 +    +  + Ll+a +      +  GD+ Ql++
  CCE27908.1 391 QALeaQCWVPLLRAKK-----AVCAGDHLQLPP 418
                 7652333445555544.....456699888886 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0034       2.5       2      21 ..     227     246 ..     226     266 .. 0.81
   2 !    8.7   0.0    0.0018       1.3      61     103 ..     379     419 ..     341     439 .. 0.82
   3 !    7.5   0.0    0.0042       3.1     165     233 ..     602     676 ..     573     677 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0034
  Viral_helicase1   2 vvhGvpGcGKStlirkllrt 21 
                      ++hG pG GK++ + +l+ +
       CCE27908.1 227 LIHGPPGTGKTHTLIELILQ 246
                      79**********99999877 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0018
  Viral_helicase1  61 tkgkililDEylllhaGyilllaalskaklvilfGDplQipfh 103
                       +++++i+DE+ ++  ++ ++   l +ak +++ GD+lQ p  
       CCE27908.1 379 EDFDVVIIDEASQALEAQCWV--PLLRAKKAVCAGDHLQLPPT 419
                      3589*******9998777777..77888889********9854 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0042
  Viral_helicase1 165 kvlvyltftqalkealgvr....evttvhevqGltfdkVtlvllketdlelis..esrenllvAlTRhrkslvil 233
                      +v+++  +  a +++l+++    e   v + qG + + V++ l +++++ ++    ++  l vA+TR ++sl+++
       CCE27908.1 602 AVITPYNAQLAILASLKEQfpgvELGSVDGFQGREKEAVVVSLVRSNPEGEVGflGEKRRLNVAMTRPKRSLTVI 676
                      56666666666677777777777889999****98887655555445544444558899************9976 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.6e-08   2.7e-05       3     141 ..     207     389 ..     205     409 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.6e-08
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHG........................... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleef........................... 74 
                 +l++ Q+eai+  l++     ++ +li+ + GtGKT ++++li +l k  +  ++l+  p+++ ++   e++                           
  CCE27908.1 207 TLNDSQKEAIRYALAA-----REIALIHGPPGTGKTHTLIELILQLVKRSQ--RILVCGPSNISVDNIVERLsphklpilrlghparllpsvlnhsldi 298
                 5789999**9999955.....569************************855..9********8888888888888899999999999999999999999 PP

                 ....................GGGTGG....GEEEESSS-B--..........................-SEEEEEHHHHHHTH........HHHTTT-S CS
      ResIII  75 ....................kkflseaykeigkkvsgdkkka...................kekdstnkkilvttiqsldadseeeeeeseellrdrfd 134
                                     k      +++i+k  sg+++++                    ++    +k++++t +              +l+++ fd
  CCE27908.1 299 ltttseagaivrdvrtemdaK------QASIKKTRSGKERRQiygdlkelrkeyrererrcVANLVAGSKVVLATLH---------GAGGFQLRNEDFD 382
                 888888888886664333331......22244444444444444555554433322222222222233333333333.........3444458888999 PP

                 EEEEETG CS
      ResIII 135 viiiDEa 141
                 v+iiDEa
  CCE27908.1 383 VVIIDEA 389
                 9999998 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.5e-08   1.1e-05       1     116 [.     208     388 ..     208     508 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.5e-08
                    SSHHHHHHHHS...-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH.......................... CS
  UvrD-helicase   1 lnpeqreaias...lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee.......................... 67 
                    ln++q+eai+     ++  l+   +G+GKT++l+e+il+l+k      +rilv    n + + + eR+                            
     CCE27908.1 208 LNDSQKEAIRYalaAREIALIHGPPGTGKTHTLIELILQLVKRS----QRILVCGPSNISVDNIVERLSPhklpilrlghparllpsvlnhsldil 299
                    6899999999877667889999*********************9....9*******************9999************************ PP

                    ......................................HHHHCCHHCTT-H.HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT.SHT CS
  UvrD-helicase  68 ......................................alkkaeqessdde.rlrlalqnlseanisTlHsfcqkilkkeanrig.ldp 116
                                                          +lk+ ++e  + e r   +l   s++   TlH+ + ++l++e +++  +d+
     CCE27908.1 300 tttseagaivrdvrtemdakqasikktrsgkerrqiygDLKELRKEYRERErRCVANLVAGSKVVLATLHGAGGFQLRNEDFDVViIDE 388
                    *******9999999999999999999999999998888666655554444468999999999999999999999999998877774333 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   1.1e-07   8.2e-05       2     102 ..     224     394 ..     223     497 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.1e-07
     DUF2075   2 avvlVtGvaGtGKtvvllnllael............edde........................................................eer 32 
                 ++ l++G +GtGKt  l++l+ +l            +  +                                                         ++
  CCE27908.1 224 EIALIHGPPGTGKTHTLIELILQLvkrsqrilvcgpS--NisvdniverlsphklpilrlghparllpsvlnhsldiltttseagaivrdvrtemdAKQ 320
                 789*********************7665555555550..055556666666666777777777777777777777777777777777777777777999 PP

     DUF2075  33 tavylsvNhplvlvlrealakke......ekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrllt 102
                  ++  ++++++++ ++ +l++ +      e++   + +++++ +  +l+       + +++++dvvi+DEA  +l+
  CCE27908.1 321 ASIKKTRSGKERRQIYGDLKELRkeyrerERRCVANLVAGSKVVLATLH--GAGGFQLRNEDFDVVIIDEASQALE 394
                 99999**********9999877755665555556677777777777777..8889999*************99998 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.4e-07   0.00018     111     162 ..     205     256 ..     178     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.4e-07
       T2SSE 111 eealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivt 162
                 +++l++ ++e++r+a+++r + l+ G+ g+GKt +l  l+ ++ k+++ri++
  CCE27908.1 205 DATLNDSQKEAIRYALAAREIALIHGPPGTGKTHTLIELILQLVKRSQRILV 256
                 45667999*************************9997776666666699875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   1.4e-06    0.0011       5      50 ..     223     261 ..     220     403 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.4e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpss 50 
                 + i +++G++GtGKT++l +l  ql+++++        ++v+ ps 
  CCE27908.1 223 REIALIHGPPGTGKTHTLIELILQLVKRSQR-------ILVCGPSN 261
                 5789*********************975444.......44444433 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.1e-06    0.0023       2     106 ..     210     304 ..     209     323 .. 0.83
   2 ?    1.8   0.0      0.24   1.8e+02      81     135 ..     335     394 ..     310     411 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.1e-06
                 HHHHHHHHHHHTTC.EEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilggg.dvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 d Q+eai  +l  +   l++++ G+GKT   +  +lq v     k+  ++l+  P+   + +++++l+  k +i lr      g++ar   s+l++++d
  CCE27908.1 210 DSQKEAIRYALAAReIALIHGPPGTGKTHTLIELILQLV-----KRSQRILVCGPSNISVDNIVERLSPHKLPI-LR-----LGHPARLLPSVLNHSLD 297
                 78*********6652678************999999999.....78889*****************98887764.23.....37999999999977799 PP

                 EEEEEHH CS
                 xxxxxxx RF
        DEAD 100 ivvgtpg 106
                 i+ +t +
  CCE27908.1 298 ILTTTSE 304
                 9999975 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.24
                 EET.TSSHHHHHHHHHTT..CSEEEEEHHHHHHHHHCTSSH..CTTEEEEEEETHHHHHH CS
                 xxx.xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
        DEAD  81 iig.gvaardqlskldng..vdivvgtpgrlddllstgkln..lsqvrflVlDEadrlld 135
                 i+g  ++ r+++++ +++  +++v g    l+ l   g ++   +++ ++++DEa + l+
  CCE27908.1 335 IYGdLKELRKEYRERERRcvANLVAGSKVVLATLHGAGGFQlrNEDFDVVIIDEASQALE 394
                 4552233355555554445456666666666665556666611455677******88776 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.8e-05     0.028       2      47 ..     228     272 ..     227     411 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.8e-05
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfefla 47 
                    + + +G+GK+ +l  ++ +l+++++ +ilv+ ps+ +v++++e+l 
     CCE27908.1 228 IHGPPGTGKTHTLIELILQLVKRSQ-RILVCGPSNISVDNIVERLS 272
                    78899*****************976.***************99874 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1     7e-06    0.0052      23      85 ..     223     279 ..     210     396 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7e-06
      AAA_16  23 rpelvllsGesGvGKsslv.rellralekdggiflrgkcdql.esaipysalaqalareellrql 85 
                 r e+ l++G++G+GK+  + + +l +l k+     +++   + +s+i+ + +++ l+  + l  l
  CCE27908.1 223 R-EIALIHGPPGTGKTHTLiELIL-QLVKR-----SQRILVCgPSNISVDNIVERLSP-HKLPIL 279
                 3.799***********98857777.55555.....23333333333444445555544.333333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.9   6.7e+02      69      97 ..     121     149 ..     109     176 .. 0.72
   2 !   12.3   0.0   0.00013     0.095      18      58 ..     208     248 ..     192     264 .. 0.81
   3 ?   -1.9   0.0       2.7     2e+03     113     179 ..     275     346 ..     266     348 .. 0.76
   4 ?    0.1   0.0      0.66     5e+02     139     156 ..     378     394 ..     374     396 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.9
      AAA_25  69 peqgkVlyvsaEdsedelrrRlravgeal 97 
                   q++ +yv++E++++e+    r + ++l
  CCE27908.1 121 KVQRAGVYVALEEGREEVSLGGRLWVAKL 149
                 379999********999876555555555 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00013
      AAA_25  18 pppprrwlvkgllpagelallaGapgtGKttlaldlalava 58 
                    +++  ++  l+a e+al+ G+pgtGKt  +++l l ++
  CCE27908.1 208 LNDSQKEAIRYALAAREIALIHGPPGTGKTHTLIELILQLV 248
                 45566777888899********************9998776 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.7
      AAA_25 113 slpLfakdrggtlltadvdaleaaieevegvrlvviDplsralgg....densnsdv.galvealeriarrt 179
                 +lp++ +++   ll++++++  + ++ + +++ +v D  +++ +      ++++ ++ ++++ +l+++++++
  CCE27908.1 275 KLPILRLGHPARLLPSVLNHSLDILTTTSEAGAIVRDVRTEMDAKqasiKKTRSGKErRQIYGDLKELRKEY 346
                 466666777777789999999999999999999999999998877666655555556688888888888877 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.66
      AAA_25 139 evegvrlvviDplsralg 156
                   e+ ++v+iD  s+al+
  CCE27908.1 378 N-EDFDVVIIDEASQALE 394
                 4.899********99987 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   6.5e-05     0.048       6      51 ..     209     253 ..     206     268 .. 0.81
   2 ?    1.7   0.0       0.2   1.5e+02     121     158 ..     382     416 ..     326     436 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.5e-05
                 SHHHHHHHH.HHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SE CS
        PhoH   6 tkeQkeyle.alkkndivfaiGpaGtGKtylavalavealkkkkvkr 51 
                 + +Qke+++ al + +i  + Gp GtGKt+  + l ++++k++  +r
  CCE27908.1 209 NDSQKEAIRyALAAREIALIHGPPGTGKTHTLIELILQLVKRS--QR 253
                 67788877636779****************9999999988765..34 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.2
                 EEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE----- CS
        PhoH 121 afvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqi 158
                  +vi+DEA  + ++q  + l R     k+v +Gd  q 
  CCE27908.1 382 DVVIIDEASQALEAQCWVPLLRA---KKAVCAGDHLQL 416
                 48******999999999999986...578888887775 PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0    0.0001     0.075       4      54 ..     223     272 ..     220     280 .. 0.85
   2 ?   -2.0   0.0       4.2   3.1e+03      91     104 ..     376     389 ..     340     392 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0001
                 --EEEEE--TTS-TTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTT CS
  Flavi_DEAD   4 kkltvldlhPGaGktrkvlpelvkeaierrlrtlvLaPtrvvlaemeealk 54 
                 +++ +++  PG+Gkt+  l el+ + ++r +r lv  P  + + ++ e l+
  CCE27908.1 223 REIALIHGPPGTGKTHT-LIELILQLVKRSQRILVCGPSNISVDNIVERLS 272
                 677888889******96.56889999***************9999999886 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.2
                 ------SEEEEETT CS
  Flavi_DEAD  91 vrkknyeliimDea 104
                  r+++++++i+Dea
  CCE27908.1 376 LRNEDFDVVIIDEA 389
                 56677888888887 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00022      0.16       2      20 ..     227     246 ..     226     275 .. 0.74
   2 ?   -1.7   0.0       4.7   3.5e+03      51      79 ..     530     557 ..     498     571 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00022
                 EEESSTTSSHH.HHHHHHHH CS
         AAA   2 llyGppGtGKT.llakavak 20 
                 l++GppGtGKT +l++ + +
  CCE27908.1 227 LIHGPPGTGKThTLIELILQ 246
                 89*********334454444 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.7
                 HHHHHTSTSEEEEEETGGGHHHHHTTCCC CS
         AAA  51 keakekakpsilfiDEidalaksrsgses 79 
                 ++++  a   ++fiD     +++r+++++
  CCE27908.1 530 RDCEDTA-EPVIFIDTQGGDFPERNEEQD 557
                 3444444.699***988888888833333 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     6e-05     0.045      18      49 ..     226     257 ..     219     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6e-05
  TrwB_AAD_bind  18 ilivGttGsGKtqalekllrairargdraivl 49 
                    +li G  G+GKt +l +l+ ++ +r +r++v 
     CCE27908.1 226 ALIHGPPGTGKTHTLIELILQLVKRSQRILVC 257
                    6899*************************997 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00027       0.2       6      79 ..     227     394 ..     223     408 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
      AAA_24   6 liyGpsgiGKTtlakel.......gpkplfi.....dtekGlksldadkfpdie............................................. 47 
                 li Gp+g+GKT+++ el        +++l++      +++ + +l ++k+p ++                                             
  CCE27908.1 227 LIHGPPGTGKTHTLIELilqlvkrSQRILVCgpsniSVDNIVERLSPHKLPILRlghparllpsvlnhsldiltttseagaivrdvrtemdakqasikk 325
                 799************999999999899999888888666666666666666555666666666666655555555554444333333333333444444 PP

      AAA_24  48 ............swedfldevvel.........................aaeladyktlviDtidelee 79 
                              ++++++e+ e                          +  ++d+++++iD ++++ e
  CCE27908.1 326 trsgkerrqiygDLKELRKEYRERerrcvanlvagskvvlatlhgaggfQLRNEDFDVVIIDEASQALE 394
                 444444444444444444444444888888888888888888888888888888888999988888754 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         3   2.3e+03     213     253 ..     154     213 ..      75     256 .. 0.60
   2 ?   -1.7   0.0       1.9   1.4e+03     284     298 ..     359     374 ..     287     391 .. 0.61
   3 ?    1.7   0.0      0.19   1.4e+02      32      86 ..     558     612 ..     542     632 .. 0.83
   4 ?    7.5   0.1    0.0031       2.3     327     346 ..     658     677 ..     645     680 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3
                 xxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 213 lfkelaeklaelkekseskr...................kkeeklenlreLysllkelek 253
                  ++++++ +++l++ se +                    +ke+++++++++ ++l++ +k
  CCE27908.1 154 TYRRMNQSMEKLRSLSEPEYspfirvlfglsspssvaysEKEDEMDKIEWVDATLNDSQK 213
                 355666666666666555555556666666665555553323355555555555555544 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.9
                 x.xxxxxxxxxxxxxx RF
      UvrD_C 284 k.ekipiiTiHqAKGl 298
                   +k+ + T+H A G 
  CCE27908.1 359 AgSKVVLATLHGAGGF 374
                 1466777777777665 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.19
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  32 kekktvekgekivvleaeteeeEaekiaatikallekneklediavLvRsnkdad 86 
                  ek + +kg+   + e++++e Ea  + + + +l+e     ediav++  n++  
  CCE27908.1 558 DEKGAPRKGKGSLLGESKSNEMEAALVRRHVGSLVEAGVRPEDIAVITPYNAQLA 612
                 333677788888999*********************************9998865 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0031
                 xxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 327 EkRlfYVaiTRAkkrLfisy 346
                 EkR + Va+TR+k+ L+++ 
  CCE27908.1 658 EKRRLNVAMTRPKRSLTVIG 677
                 899999***********985 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00015      0.11      45      79 ..     221     255 ..     196     276 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavraglsvl 79 
                 +++e  ++ Gp+G+GK+h  i l  + v++  ++l
  CCE27908.1 221 AAREIALIHGPPGTGKTHTLIELILQLVKRSQRIL 255
                 567778999**************999999988886 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00038      0.29       3      47 ..     227     273 ..     225     292 .. 0.86
   2 ?   -3.0   0.0       8.6   6.5e+03      53      77 ..     638     662 ..     632     666 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00038
                 EEE--SSSSHH.HHHHHGGGGB.S--EEEEE--TT--HHHHH--B-- CS
       AAA_5   3 lLvGppGtgKs.elaerlaaal.nreveyvqltrdtteedlkgrrei 47 
                 l+ GppGtgK+ +l+e +++++ +++   v ++++++ ++++ r+++
  CCE27908.1 227 LIHGPPGTGKThTLIELILQLVkRSQRILVCGPSNISVDNIVERLSP 273
                 788*******9568899999997777788888999999999998875 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.6
                 ....--------G-SEEEEESGGG- CS
       AAA_5  53 slvdsplvraaregeilvlDEvera 77 
                 + v  +lvr+  ege+ +l+E  r+
  CCE27908.1 638 EAVVVSLVRSNPEGEVGFLGEKRRL 662
                 555567788888******9996665 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00049      0.36       6      52 .]     628     676 ..     624     676 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00049
    UvrD_C_2   6 tihkaQGsefpaVivfdpdlaaarmgel....rrrlLYtavTRAreklilv 52 
                 ++  +QG e +aV+v      + ++ge+     +r L +a+TR ++ l+++
  CCE27908.1 628 SVDGFQGREKEAVVV--SLVRSNPEGEVgflgEKRRLNVAMTRPKRSLTVI 676
                 7889***********..54444444778999************99999885 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00038      0.28      84     131 ..     309     356 ..     298     364 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00038
   4HB_MCP_1  84 ieeleaeidkllekyektilteeEkelleefkeqlnaYrevrkkvlel 131
                 + + ++e+d + ++++kt   +e ++++ ++ke  ++Yre + + ++ 
  CCE27908.1 309 VRDVRTEMDAKQASIKKTRSGKERRQIYGDLKELRKEYRERERRCVAN 356
                 467899********************************9877766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:01.35
# Mc/sec: 1536.29
//
Query:       CCE27909.1  [L=746]
Description: uncharacterized protein CPUR_01383 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 4780.32
//
Query:       CCE27910.1  [L=809]
Description: related to mitochondrial intermediate peptidase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-121  407.3   0.1   2.2e-121  406.3   0.0    1.5  2  Peptidase_M3    Peptidase family M3
  ------ inclusion threshold ------
      0.094   12.3   0.0       0.16   11.6   0.0    1.3  1  Peptidase_M50B  Peptidase M50B-like


Domain annotation for each model (and alignments):
>> Peptidase_M3  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.52   4.7e+03     325     362 ..     146     183 ..     116     192 .. 0.74
   2 !  406.3   0.0  2.5e-125  2.2e-121       2     457 ..     299     789 ..     298     790 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.52
                   HHHHHHHHHHHHHHCTT-TCCGHH....HHHHHHHHHH CS
  Peptidase_M3 325 ellrqlvfaafdqelHeeaeeeqilkkdlletyaelrk 362
                    l+r l +++f   +H  ++ +q+  + ++ +y+ +++
    CCE27910.1 146 LLCRVLDLSDFVRMTHPDIRFQQAAADAWSMVYQYMNQ 183
                   57889999999999999999999888889998888876 PP

  == domain 2  score: 406.3 bits;  conditional E-value: 2.5e-125
                   HHC-S-HHHHHHHHHHHCTTTCCSS..THHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTS.TT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M3   2 lkespdrelRkeayeashskaaeqrntlensklleellklraelAkllgyesyaelaledk.maknpetvldfleelvkklrpllekelkllkelkk 97 
                   l++  d+e+Rke+y a+ ++         + + le++lklr elAkl g++s+ ++al+d+ mak+p +v++fl +l+++++pl++ el++l e k+
    CCE27910.1 299 LQSVYDEETRKEIYLAQRTASR------RTIENLESMLKLRSELAKLAGFDSHGHMALKDRmMAKSPASVMKFLLALREHNAPLVQHELAELVEKKR 389
                   678899***********99933......45799*************************998469******************************888 PP

                   HCCT-S.SS--CCCHHHHHHHHHCCCCS..--CCCCGGG-BHHHHHHCHHHHHHHHHTEEEEEETTS..--SSTT-EEEEEEET.TT-EEEEEEEEE CS
  Peptidase_M3  98 kelgle.gelqpwDvaYYsekqreekyd..ldqeelkeyfpletvleGllelfeeLfGikfveekdakgevwhedVrkleVvdeilsegligeiylD 191
                   ++l  +  +l +wD++ Y+ek r+e  +    + +l+ yf+++tv++Gl++lf +L+G++fv++++  gevwh+dV++l+Vv + + e+l + +y+D
    CCE27910.1 390 ERLAMPeVNLLAWDRDLYMEKIRAEMRSrtRHEDQLSAYFSVGTVMQGLSRLFDRLYGVRFVPRDPLPGEVWHPDVKRLDVVAD-NGEQL-AVLYCD 484
                   88888888999************999888877788*************************************************.55555.****** PP

                   EC--TTS-SS-EEEEEE--BT....................................TS-.B--EEEEEEEEE--.-BTTS--B--HHHHHHHHHHH CS
  Peptidase_M3 192 lyerkgKrggAasfglvksre....................................dgt.rqlpviylllNftk.psskkPsLLtldevetLfHEf 250
                   l+ r++K  + a+f++++sre                                    dg+  qlp i+l+++f k  s+ +P+LL++++vetLfHE+
    CCE27910.1 485 LFYRPQKSPNPAHFTVRCSREihqdeldeaaedtgsatpifdnaeqaandgmetsrrDGKlKQLPTIALVCDFPKrNSAREPALLSYYSVETLFHEM 581
                   *******************944556788899999***********************66659***********997888****************** PP

                   HHHHHHHC--BSSGGGSTT-S-CCCCCHHHHHHHHGGGSHHHHHCC-B-TTT--B--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-TCCGH CS
  Peptidase_M3 251 GHsmHsllsrteysnvsgtnvpidfvElpSqlmEnlltepevlkslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeq 347
                   GH++Hs+l+rt ++nvsgt++++df+ElpS+lmE+++ +p+vl+++++h +t +++p +l+++ ik +   ++l++  q+v+a++dq +H+   ++ 
    CCE27910.1 582 GHAIHSILARTSFQNVSGTRCATDFAELPSTLMEHFAADPTVLSLFARHWKTDQPLPYDLVQNRIKLSRRFEGLDTEHQIVLAMVDQAYHSPSVQDT 678
                   ***********************************************************************************************98 PP

                   H....HHHHHHHHHHCTTSCTTBT.TSSGGGC-CCCHTSS-TTTTCHHHHHHHHHHHHHHCCHHCCTT-....CCHHHHHHHHTTTTTTSS-HHHHH CS
  Peptidase_M3 348 ilkkdlletyaelrkkflglpvap.deasqasFghlfahgYaanYYsylyaevlaldifekffeedpln....retGeryrkeiLsrGgskdplell 439
                     ++d+++ + e++ +f+  p +p ++ +q  Fghl  h Y+++YYsyl+++vla ++++ +f ++       r++Ger ++++L++Ggs+dp+++l
    CCE27910.1 679 --NFDSTRLFHEIQHQFAHGPKDPpETCWQGFFGHL--HSYGSTYYSYLFDRVLAERVWRVVFRSGRDGaaieRKNGERVKQNLLKWGGSRDPWRCL 771
                   ..699************99665552779********..7*************************994437899************************ PP

                   HCCCSS---SHHHHHHCT CS
  Peptidase_M3 440 kkflgrepsadallkalg 457
                   ++ lg+ + a++ +++++
    CCE27910.1 772 ADTLGEGRLAAGDEESMA 789
                   ********9999999987 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.8e-05      0.16      23      44 ..     574     595 ..     561     598 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.8e-05
  Peptidase_M50B  23 lvvffHElGHalaalLtGgrvk 44 
                     ++++fHE+GHa+  +L+  +++
      CCE27910.1 574 VETLFHEMGHAIHSILARTSFQ 595
                     79************99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 5251.95
//
Query:       CCE27911.1  [L=258]
Description: uncharacterized protein CPUR_01385 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-39  133.5   0.1    7.7e-39  132.6   0.1    1.4  1  ApoO      Apolipoprotein O


Domain annotation for each model (and alignments):
>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.1   4.3e-43   7.7e-39       4     130 .]      82     210 ..      67     210 .. 0.96

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 4.3e-43
        ApoO   4 svrtpseeptdrLeegvrslRkslepytsavqdelnkvkskvetaeqsvtdtiasLkepp...edllPrlgyilvagLaGsilarrrsilkRvlyPlal 99 
                 + r++ ++ptdrL+ +++++R +l++ +  ++ ++n+++++++++eqs+t+tiasL++++   e+l+P+ +y+lva++aGsil+rr +il+R ++P+++
  CCE27911.1  82 TKRSRGPSPTDRLALQIGRARMALYRVALCAETKVNETMDSAFHLEQSFTNTIASLAPAResgEKLMPGTIYVLVAAMAGSILTRRSNILLRSAVPMLF 180
                 44555599******************************************************************************************* PP

        ApoO 100 gglaaslfyPqtakntgdllykyeqekvpav 130
                 g++a ++++P+t++n++dl ++yeq ++pav
  CCE27911.1 181 GVGAGWTVLPVTMRNITDLTWRYEQ-RFPAV 210
                 *************************.89997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1922.55
//
Query:       CCE27912.1  [L=417]
Description: related to tRNA dihydrouridine synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-44  149.8   0.1      6e-43  147.1   0.1    2.0  1  Dus             Dihydrouridine synthase (Dus)
  ------ inclusion threshold ------
       0.18   11.7   0.0       0.78    9.6   0.0    2.0  2  Nuc_rec_co-act  Nuclear receptor coactivator


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.1   0.1   6.6e-47     6e-43      43     246 ..      92     296 ..      22     320 .. 0.77

  Alignments for each domain:
  == domain 1  score: 147.1 bits;  conditional E-value: 6.6e-47
                 HHHH-GGGGGTSCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEESSTTEEETTEEEGGGGGGSHHHHHHHHHHHHCCSS....S-EEEEEESESSTTT CS
         Dus  43 rirmlseeeeetplavQlggsdpallaeaAklvadlgadeIdlNvGCPskkvtrggaGaaLlrkpdlvaqivkavvkave....iPvtvkirigiddee 137
                  +r ++e+e + +l++Q+g++dp+ ++eaA+lva+ ++ +Id+N+GCP++++t gg+GaaLl++pd +  i++a+vk+++    i ++vkiri   ++ 
  CCE27912.1  92 IYRVFPEAEAN-KLIFQIGTADPDRAVEAARLVAA-DVAGIDVNAGCPKPFSTLGGMGAALLQNPDKLVAILEALVKNIShefeIGISVKIRIL--NTA 186
                 34445555555.***********************.*******************************************977444445544444..668 PP

                 C.HHHHHHHHHHCT-SEEEEESS.ECCCTT-C..G--CHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHHHHHHHHSC CS
         Dus 138 enalelakiveaaGaqaltvHgR.traqnyeg..tadweaIkevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfaestavktge 233
                  ++  l++++ a+G++ ltvH+R t+++ +e   +++++ +++v+ +  +  ++NGd++++++  +  +e Gadg mi+ +a++nP  f+  t ++ g+
  CCE27912.1 187 AETEALVRRLVATGITGLTVHCRtTPMRPRERaiRDQLRMVADVCHEAGVACLMNGDVESRDEGLRLAAEYGADGAMIAVAAERNPSCFR--TGADGGI 283
                 88999******************877887777789******************************************************8..5556555 PP

                 ------HHHHHHH CS
         Dus 234 aepapplaeeaei 246
                    +p + +++++
  CCE27912.1 284 LPWQPVVEQYLKL 296
                 5555555555443 PP

>> Nuc_rec_co-act  Nuclear receptor coactivator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.55   4.9e+03       6      14 ..     217     225 ..     214     227 .. 0.82
   2 ?    9.6   0.0   8.7e-05      0.78      26      45 ..     332     351 ..     326     354 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.55
  Nuc_rec_co-act   6 EkALLdQLv 14 
                     E+A  dQL 
      CCE27912.1 217 ERAIRDQLR 225
                     99*****96 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 8.7e-05
  Nuc_rec_co-act  26 eEiDraLGIpeLVgQsqald 45 
                      Ei + LG ++L +Q+q +d
      CCE27912.1 332 TEICKTLGCDHLLEQAQEVD 351
                     69***************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3041.29
//
Query:       CCE27913.1  [L=1135]
Description: uncharacterized protein CPUR_01387 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.38
# Mc/sec: 8857.35
//
Query:       CCE27914.1  [L=512]
Description: probable oxysterol-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-89  299.3   0.1    3.1e-78  263.2   0.0    2.1  2  Oxysterol_BP  Oxysterol-binding protein
  ------ inclusion threshold ------
          4    8.0   5.6         12    6.5   5.6    1.9  1  DNA_pol_B_N   DNA polymerase beta N-terminal domain


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.2   0.0   3.4e-82   3.1e-78       1     272 [.      43     325 ..      43     329 .. 0.94
   2 !   31.4   3.3   9.8e-12   8.8e-08     313     358 ..     328     374 ..     325     390 .. 0.82

  Alignments for each domain:
  == domain 1  score: 263.2 bits;  conditional E-value: 3.4e-82
                   HHHCCHTTSTT-BCCCS---GGGEEEEEHHHHHHHCCTTCHHHHHHHC.SSHHHHHHHHHHHHHHCCCGCTSTSSSEEE---TT-EEEEEETT...C CS
  Oxysterol_BP   1 slwsilkkciGkDLskislPvffneplSlLqrlaedleyselLdkaakeddsleRlayVaaFalSsyastikrrlkKPFNPlLGEtfelvred...k 94 
                   +++s+l+  +G DLs+++lP+f++ep+S+L+r++++++++e+L ++ + dd++eR++ V++F+lS+++ ++   +kKP+NP+LGE+f+++++    k
    CCE27914.1  43 HIISQLR--PGADLSRVVLPTFILEPRSMLERITNFMCHPEMLLHIPDIDDPVERFVSVVKFYLSGWHIRP-PGVKKPLNPILGEIFTCYWQLdadK 136
                   589****..**************************************************************.799****************545788 PP

                   EEEEEEEEEETTTTEEEEEEEE..CTEEEEEEEEEEEEE-SSEEEEEE-SEEEEEEEEE.....SEEEEEEE--EEEEE-TTTTS-EEEEEEEEEEE CS
  Oxysterol_BP  95 gfrfiaEQVsHhPpvsAfhaes..egweldgeikvkskflgkslevkpeGtahlellkk.....sgehYtwtkpttivhniivgklwvelsgeveit 184
                   + ++i+EQ+sHhPp s++++++   ++++dg++k++s+flg+s+   +eG+a+l+ll++      ge+Y +t+p++++++i++gk+ +el++++ ++
    CCE27914.1 137 RAYYISEQTSHHPPKSSYFYMApdYHIRIDGTLKPRSRFLGNSAASLMEGVAYLSLLNRgknadVGEQYILTQPNMYARGILFGKMKYELGDHSFVR 233
                   888*******************8778999***************************555566679******************************** PP

                   ETTT--EEEEEEE---SSS---SSEEEEEEEE.TTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT-....BSXXGCGSSTTBCCCCCCH CS
  Oxysterol_BP 185 nhstgdkakleFkkkglfsskksnkvegkvkd.kkkevlyeisGkwdeelyikkkktekkeeeedaseks....kvkekeeqeefeseklWka 272
                     + +  a+++Fk+kg++ s+++n + g +k+ +++evlye+sG w++e+ ik++kt++k+   +a +++    + ++ eeqee+es+klW  
    CCE27914.1 234 CPELDLIADIDFKTKGWV-SGTYNAIGGFIKReSTGEVLYELSGLWSDEMCIKDMKTGHKDVFFNAAKSQpsapQIRPLEEQEERESQKLWLS 325
                   888999************.59**********87999*********************99999888888734578*****************65 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 9.8e-12
                   HHHHTT-HHHHHHHHHHHHHHHHHHHHHHCCTT.----SSEEEEETT CS
  Oxysterol_BP 313 raleegdideAeeeKkrlEekQRerrkereekk.ewkpkwFekekdp 358
                   +a++e++++ A++eK+++E++QRe++++r +++ ew+p++F+++k+ 
    CCE27914.1 328 KAVKERNHEVATNEKTKIEDQQREEAAKRTQDGvEWQPRLFRRVKST 374
                   7899*************************665559********9953 PP

>> DNA_pol_B_N  DNA polymerase beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.6    0.0014        12      44     100 ..     399     486 ..     328     488 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0014
  DNA_pol_B_N  44 d...............................ldidtdtgedgeglsvplavrsisIpLtvdasaatgavP..vVdrerleaamreLlag 100
                  +                               + +++ + +++   ++  a + i +p++v+a a++ avP  vV++e+l+ ++ +Ll+ 
   CCE27914.1 399 TkqmlsiypivdgqkldgnlvipprkesgptaIPVEAPESSNS-SSDNVAAEAPIAVPVSVPA-AVPVAVPaaVVEEEKLPSEIADLLQS 486
                  2444455555555555555556666666664444444444444.4455557799*********.9999**9778*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1016  (0.056668); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3685.56
//
Query:       CCE27915.1  [L=210]
Description: probable splicing factor u2af 35 kd subunit (small subunit) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-08   34.6  18.6    5.4e-07   29.4   2.6    3.2  3  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
     0.0017   18.1   0.0     0.0027   17.5   0.0    1.4  1  RRM_1      RNA recognition motif. (a.k.a. RRM, RBD, or RNP do
  ------ inclusion threshold ------
      0.012   15.6   2.9      0.012   15.6   2.9    3.3  3  zf_CCCH_4  Zinc finger domain
      0.017   15.8   3.7       0.41   11.4   0.2    2.4  2  Torus      Torus domain
       0.17   12.1   3.5       0.38   11.0   0.1    2.4  2  zf-CCCH_3  Zinc-finger containing family


Domain annotation for each model (and alignments):
>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   2.6   1.5e-10   5.4e-07       4      26 ..      16      38 ..      14      39 .. 0.92
   2 ?   -0.1   0.1      0.27   9.6e+02      15      19 ..      84      88 ..      83      88 .. 0.84
   3 !   12.0   4.8   4.3e-05      0.16       2      25 ..     143     166 ..     142     168 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.5e-10
                HCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH  4 elCrffmrtGyCkyGdrCkFaHg 26
                ++C f+++ G+C++GdrC++ H+
  CCE27915.1 16 VNCSFYFKIGACRHGDRCSRKHV 38
                79********************8 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.27
                -TTGG CS
     zf-CCCH 15 CkyGd 19
                CkyG+
  CCE27915.1 84 CKYGE 88
                99996 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 4.3e-05
                 HCHCBCHHHHHS--TTGGG-SSBS CS
     zf-CCCH   2 ktelCrffmrtGyCkyGdrCkFaH 25 
                 ++e C++ + +  C +G++C+F+H
  CCE27915.1 143 FREACCRLNSGEGCVRGGFCNFIH 166
                 6899******55************ PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.5e-07    0.0027      19      69 ..      83     133 ..      66     134 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.5e-07
                 HHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  19 FskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 + k+G+ +++ ++ ++++   g  + +F+ +e+A++A ++ln + + gr++
  CCE27915.1  83 LCKYGELEELVVCDNNNDHLIGNVYARFKYEESAQSACDELNSRWYAGRPI 133
                 5689***99999999**********************************98 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   2.9   3.4e-06     0.012       1      15 [.      18      33 ..      18      34 .. 0.94
   2 ?    0.1   0.1      0.25     9e+02       9      13 ..      84      88 ..      83      88 .. 0.85
   3 ?    4.1   1.0     0.015        53       9      19 .]     156     166 ..     155     166 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.4e-06
   zf_CCCH_4  1 Ckfflq.GtCkkGdkC 15
                C f+ + G C++Gd+C
  CCE27915.1 18 CSFYFKiGACRHGDRC 33
                9999999********* PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.25
   zf_CCCH_4  9 CkkGd 13
                Ck+G+
  CCE27915.1 84 CKYGE 88
                99996 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.015
   zf_CCCH_4   9 CkkGdkCrFaH 19 
                 C +G  C+F+H
  CCE27915.1 156 CVRGGFCNFIH 166
                 99********9 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00011      0.41      71      98 ..      17      44 ..       9      51 .. 0.78
   2 ?    5.0   0.4     0.011        38      71      92 ..     146     167 ..     135     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                -B-HHHHHT--SSGGG-SSB-S---SS- CS
       Torus 71 yfClfFarGlCakGkkCeylHrlPteed 98
                 + ++F  G C +G +C+  H  P+ ++
  CCE27915.1 17 NCSFYFKIGACRHGDRCSRKHVKPSYSQ 44
                34467888*************9998765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.011
                 -B-HHHHHT--SSGGG-SSB-S CS
       Torus  71 yfClfFarGlCakGkkCeylHr 92 
                  +C   +   C++G  C+++Hr
  CCE27915.1 146 ACCRLNSGEGCVRGGFCNFIHR 167
                 5566556667***********8 PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1    0.0001      0.38       7      31 ..      17      42 ..      12      62 .. 0.80
   2 ?    1.0   0.4      0.13   4.7e+02      15      28 ..     155     168 ..     144     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
   zf-CCCH_3  7 dcyffy.ystctkGdscpfrheeaal 31
                +c f++    c  Gd+c+ +h + + 
  CCE27915.1 17 NCSFYFkIGACRHGDRCSRKHVKPSY 42
                7999983579***********98765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.13
   zf-CCCH_3  15 tctkGdscpfrhee 28 
                  c +G  c f h +
  CCE27915.1 155 GCVRGGFCNFIHRK 168
                 47788888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1545.22
//
Query:       CCE27916.1  [L=747]
Description: related to ELMO2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-47  162.1   0.0    3.8e-47  160.7   0.0    1.7  2  ELMO_CED12  ELMO/CED-12 family
    5.4e-37  127.3   0.1    9.7e-37  126.5   0.1    1.4  1  PH_12       Pleckstrin homology domain
    3.5e-13   49.8   0.0    7.5e-13   48.7   0.0    1.5  1  DUF3361     Domain of unknown function (DUF3361)


Domain annotation for each model (and alignments):
>> ELMO_CED12  ELMO/CED-12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.62   3.7e+03      63      95 ..     134     166 ..     122     207 .. 0.70
   2 !  160.7   0.0   6.4e-51   3.8e-47       2     176 ..     248     441 ..     247     442 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.62
  ELMO_CED12  63 gtGlLgLenLlyfaenheeefqkllsessrrps 95 
                  +G++g + L   +  ++++f  ++++ s++ +
  CCE27916.1 134 SPGFFGFRALKPAVAVYPQFFELVIQQLSSADH 166
                 689999999999999999999988887666544 PP

  == domain 2  score: 160.7 bits;  conditional E-value: 6.4e-51
  ELMO_CED12   2 llekkrktpldlenpeherlLkelwsalypdepeinst.................ksrisekWkklGFqgedPatDFrgtGlLgLenLlyfaenheeef 83 
                 ll+k+r++++dle+++h+r+Lk+l+ a++p++  + st                 +++++ekW++lGF++e+P  +F +tG+Lg+++L++++++he++f
  CCE27916.1 248 LLRKWRQVRVDLERQDHRRALKSLHLASAPEKSINGSTsvegasdapadnkdgsaRKHNPEKWRRLGFETESPGHEFGQTGYLGVMDLTDYVRRHEDSF 346
                 69************************999665555555************************************************************* PP

  ELMO_CED12  84 qkllsessrrpseeeypfavasinvtslllelleiektdeed.e.eeqkdklktnntkllssnlnafeelfsvlfllfdslWkekkatimdfnkv 176
                 qk+l+e+  +p+++++p+a+as+ vt +l+e++e+++ d ed +  ++ d+++ ++  l+ + l ++++l+++ +l f+++Wk+++a+i df+kv
  CCE27916.1 347 QKMLLEQAAKPAQSRCPIARASLVVTLTLYEHFEVDQVDLEDaKgHQSLDDKDRDQVGLFHPLLLQWSRLHTAGLLGFFRIWKATGAEIDDFDKV 441
                 ******************************************8866655555569***************************************9 PP

>> PH_12  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.1   1.6e-40   9.7e-37       1     134 []     512     690 ..     512     690 .. 0.83

  Alignments for each domain:
  == domain 1  score: 126.5 bits;  conditional E-value: 1.6e-40
       PH_12   1 vkeqRincLleGawfpk........pgesgkrek...........................kkwrfvkLspnrkvLhygdfeekspqdpsleeltekid 64 
                 vkeqR++cLl+G+wf+k        p       +                            +wrf+kLs+nr++Lhy+dfe++  +dp+l+ lt+kid
  CCE27916.1 512 VKEQRVRCLLQGSWFRKpapqynksP-------ThgrkdhdandetlhqqrqmptkqqqhsLPWRFAKLSHNRRYLHYADFEHQVGHDPGLDILTNKID 603
                 89***************544433330.......25666677788888888888888888889************************************* PP

       PH_12  65 lsdisevksgkeaphskesgksssslskksssklsfslitl.................skekellelvasseseaaeWlDGLsmLlg 134
                 l +is+v s+++a ++++s+ s  ++++ ++ ++s+s   +                 ++e+++l+l++ ++s a+eWlDGL+mLl+
  CCE27916.1 604 LGAISSVGSNVSAAEDSTSDASDTTVQNLATRTTSTSHAKKtttritiyaaemasrgeTEEYPVLTLWPVDASLASEWLDGLLMLLN 690
                 *************99998888888874444444444444444445666677**********************************97 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.3e-16   7.5e-13       2     135 ..      37     190 ..      36     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.3e-16
     DUF3361   2 FAqeFisrdGlkllvkiveegkesgeilayaLtafleLmdhgivsWdtls....deFikkiasivnksaadasilqrslaiLesivlnss......... 87 
                 FA+ Fis++Gl +l  ++  +   g++layaL+++  L++   ++Wd+++    ++F+++i++ +  +   ++il+ +++iL  +v  s+         
  CCE27916.1  37 FADVFISSGGLVVLRGLIMAS--GGNTLAYALQSLTRLLEV-DMGWDIFEgpsaSAFVERIVELIVVN-PLVNILRGAMSILVALVSHSQssqpasamg 131
                 ********************9..99***************9.99***997444468*******99999.459***************999999999999 PP

     DUF3361  88 ......elyelvekevt.....lesLiehLqssnqeiqtnalaLlnALllkaddskrke 135
                         +  ++ +v      +e +i+ L+s+++ ++ ++l+ +nAL++ a +++ ++
  CCE27916.1 132 gsspgfFGFRALKPAVAvypqfFELVIQQLSSADHALCASTLMFINALIRDAVSNDSST 190
                 988865336777777777777889999***********************998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5218.63
//
Query:       CCE27917.1  [L=333]
Description: uncharacterized protein CPUR_01391 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-18   66.2   0.0    4.6e-18   65.3   0.0    1.3  1  NDC10_II  Centromere DNA-binding protein complex CBF3 subunit


Domain annotation for each model (and alignments):
>> NDC10_II  Centromere DNA-binding protein complex CBF3 subunit, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   2.5e-22   4.6e-18     147     264 ..     226     332 ..     218     333 .] 0.94

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 2.5e-22
                 S---HHHHHHHHHHHHHHTT----THHHHS.--S...S---EEEHHHHHHHT-GGG-GGGTTSGGGS-HHHHHHHTT--TT----------........ CS
    NDC10_II 147 dYPreetlsnyyskvfrycgleykkkehferksgaktaelpgvseeeirragrknqeamstaflskiPldfvrilNlkspiesagnkskkqgnfylpr. 244
                 +Y    t++++++k++r+ g++  k +h++r sg k+ae  g+++++i+r+g +  +am++ + +++P+ f+r +        ag++s++ g + + r 
  CCE27917.1 226 SY---STQQQWIHKIYRHLGIHITKVTHAGRGSGPKEAEKLGIDHDQIQRQG-WAGDAMHKGYWTSLPRAFMRGM--------AGFQSEHAGTYFIARa 312
                 79...9*******************************************987.7888******************........**************** PP

                 -S---HHHHTTSSTHHHHHH CS
    NDC10_II 245 rieppesLlvqlFPeideyk 264
                 ++epp++Ll++ FP+++ + 
  CCE27917.1 313 EVEPPQELLDMAFPKLNYWL 332
                 *****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2433.95
//
Query:       CCE27918.1  [L=257]
Description: uncharacterized protein CPUR_01392 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-42  144.3   0.0    5.4e-42  144.0   0.0    1.1  1  NDC10_II  Centromere DNA-binding protein complex CBF3 subunit


Domain annotation for each model (and alignments):
>> NDC10_II  Centromere DNA-binding protein complex CBF3 subunit, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.0     3e-46   5.4e-42      76     281 ..       2     194 ..       1     203 [. 0.93

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 3e-46
                 ---------EEEEEEE---SSGGG-HHHHHHHHHHHHHH-BTTTB----S--GGG-STGGGSBSS--SSTT.....S---HHHHHHHHHHHHHHTT--- CS
    NDC10_II  76 rngktnqlgqletltvlrqkcPllCpltslAaYLflRFygvkevakgdgfPdlenrqkwydlpLikgksae.....dYPreetlsnyyskvfrycgley 169
                 +ngktnq g++e++ +lr+++  lC+++ +A YL  R++      +g  fP+++++ +wyd++L+ g         +Y    t++++++k++++ g++ 
  CCE27918.1   2 SNGKTNQNGRIEYAGLLRHREIELCTMSAIANYLVWRWEQ-----SGEDFPSFRTNMDWYDVQLLIGTPQAttkeiSY---STQQQWIHKIYHHLGIHI 92 
                 699************************************6.....5777****************97766557899**...****************** PP

                 -THHHHS.--S...S---EEEHHHHHHHT-GGG-GGGTTSGGGS-HHHHHHHTT--TT----------........-S---HHHHTTSSTHHHHHHHSS CS
    NDC10_II 170 kkkehferksgaktaelpgvseeeirragrknqeamstaflskiPldfvrilNlkspiesagnkskkqgnfylpr.rieppesLlvqlFPeideykref 267
                  k +h++r sg k+ae  g+++++i+r+gr+  +am++a+l+++P++f+r +        ag++s++ g + + r ++epp++Ll+++FP+++ + r+ 
  CCE27918.1  93 TKVTHAGRGSGPKEAEKLGINHDQIQRQGRWAGDAMHKAYLTSLPREFMRGM--------AGFQSEHAGTYFIARvEVEPPKELLDMVFPKLNYWLRQ- 182
                 ****************************************************........*************************************8. PP

                 .GGGS-H.HHHHHHH CS
    NDC10_II 268 esdklsd.aaqeFlk 281
                      +d a ++Fl+
  CCE27918.1 183 ---PTEDiATKSFLN 194
                 ...344447777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1824.60
//
Query:       CCE27919.1  [L=606]
Description: related to YIP3 protein (yeast protein of unknown function) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-35  120.8   1.4    4.9e-35  120.3   1.4    1.2  1  PRA1      PRA1 family protein


Domain annotation for each model (and alignments):
>> PRA1  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   1.4   2.7e-39   4.9e-35       3     138 ..      33     168 ..      31     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 2.7e-39
        PRA1   3 laplRpwsefldlsrfslPkslskatsRvkkNllyfrtNYlivvllvlllslltnplslivllllvlawlflyflrseplvlfgrelsdrvvlivllvv 101
                 +++lR++sef+d++r+s+P+++++++sRv++Nl++f++NY++v+l+++l++lltn l l+ ++l+v++++f+  l  ++l+++  + ++++++++ll+v
  CCE27919.1  33 FSNLRSVSEFFDFKRVSKPANFGEMQSRVNYNLSHFSSNYAVVFLMLSLYALLTNWLLLFDITLVVVGMWFIGRLDGRDLEIGTFRATSSQLYTGLLIV 131
                 799************************************************************************************************ PP

        PRA1 102 svlllfltgavlvllwalliglllvllHAsfrkrndk 138
                 sv+l ++++++++llw ++++ +++l HAsf+ +++ 
  CCE27919.1 132 SVPLCLVASPFSTLLWLIGASGVTILGHASFMDKPID 168
                 ********************************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1241  (0.0692175); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 3876.58
//
Query:       CCE27920.1  [L=145]
Description: uncharacterized protein CPUR_01394 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       189  (0.0105416); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1084.58
//
Query:       CCE27921.1  [L=178]
Description: probable PEX4-E2 ubiquitin-conjugating enzyme-peroxin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-29  101.4   0.0    3.9e-29  101.1   0.0    1.1  1  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   0.0   2.2e-33   3.9e-29       1     126 [.      25     154 ..      25     163 .. 0.87

  Alignments for each domain:
  == domain 1  score: 101.1 bits;  conditional E-value: 2.2e-33
                 HHHHHHHHHHHSTTTTE...EEEEEETTEECEEEEEEEB..TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE.TTSBB-CGGGSTTT--TT CS
      UQ_con   1 rlqkelkelakkkpsgi...saklvddenlfewkvlikgp.edtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd.ksGevcldiLkeekWspa 94 
                 rl +e+++++k++       + ++v + +l  w+++++g   ++ Y+ g + l++++p++YPl+pP+++f t+i+HPn+  ++Ge+cld+Lk+  W+pa
  CCE27921.1  25 RLIREMESWRKEERLERgieRLGPVGEGDLLCWEAVVNGGgVGGGYDAGRWLLSISIPPTYPLHPPQLRFLTPIVHPNIAlSNGEICLDLLKDA-WTPA 122
                 57778886665554333001345666789********9865899************************************************66.**** PP

                 SHHHHHHHHHHHHHHS--TTS-SSHHHHHHHH CS
      UQ_con  95 ltlesvllsiqsLlaepnpesplnkeaakllk 126
                 +++ +++ ++  Ll+ p+++spln++aa+ll+
  CCE27921.1 123 YSVLECVRAVRMLLSCPETDSPLNVDAAALLR 154
                 ****************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1393.31
//
Query:       CCE27922.1  [L=374]
Description: probable mannosyltransferase required for complex glycosylation [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.2e-110  366.8   0.0   7.3e-110  366.5   0.0    1.1  1  Anp1             Anp1
  ------ inclusion threshold ------
      0.013   15.3   0.0       0.02   14.7   0.0    1.3  1  Glycos_transf_2  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Anp1  Anp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.5   0.0  8.2e-114  7.3e-110       3     263 ..      77     339 ..      75     340 .. 0.98

  Alignments for each domain:
  == domain 1  score: 366.5 bits;  conditional E-value: 8.2e-114
        Anp1   3 ekydlnklestadaaenkekvLiltplrdaekflpeyfenllkltyphelidLaflvsdtsegdktlealeeelkklqkkkkk.krfrsitilekdfge 100
                  +y+ln+++ t++++en+e+vLiltp+   ++f++ey++nll+l+ypheli+L+f++++t+eg+++++al++ ++k+qk++++ +rf+si il++df+ 
  CCE27922.1  77 IRYNLNNVTITPNPIENQEHVLILTPM---ARFYQEYWDNLLRLNYPHELITLGFILPKTKEGNAATAALQQMIQKTQKRGPEkDRFKSIIILRQDFDP 172
                 579************************...***************************************************999**************9 PP

        Anp1 101 k.isqsesdrhkvevqklRRklmaraRNsLlssaLkpehswvlwlDaDivetpktliedlishdkdvivpnvlrklpdelek...eqpYDlnsWvesee 195
                 +  sq+e++rhk+++qk+RR++ma+aRNsLl+++L+p +swvlwlD+Divetp+tli+dl++h+kd+ivpn+++k++de++k   e+pYD+nsW++se 
  CCE27922.1 173 AiASQDEAERHKMSNQKARRSVMAKARNSLLFTTLGPATSWVLWLDSDIVETPPTLIQDLATHNKDIIVPNCFQKYYDEEKKkmdERPYDFNSWQDSEV 271
                 98999*************************************************************************8874599************** PP

        Anp1 196 alelakkldeddvivegyaelatkrvhlaklrdengdpeeeveLDgVGgvsilvkaevfrqGamFpaf 263
                 al++a+k+++d++++egya+++t+r ++a++++  gd++ +++LDgVGg++++vka+v+r+GamFp+f
  CCE27922.1 272 ALQMAAKMGPDEILLEGYADMPTYRSLMAYMATVGGDQNLALPLDGVGGTALFVKADVHRDGAMFPPF 339
                 *******************************************************************9 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.3e-06      0.02      63     132 ..     191     260 ..     139     282 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.3e-06
                      SS-HHHHHHHHHHHH--SS...EEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS CS
  Glycos_transf_2  63 envGkagalnaglraatgd...yilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrv 132
                      ++   a+a+n  l  + g    ++l+lD+D + +p   + l++ l  +++d+++++ + + +++ +++  +r 
       CCE27922.1 191 RRSVMAKARNSLLFTTLGPatsWVLWLDSDIVETP---PTLIQDLATHNKDIIVPNCFQKYYDEEKKKMDERP 260
                      3447899****************************...7899999999*********9999999888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2672.47
//
Query:       CCE27923.1  [L=39]
Description: uncharacterized protein CPUR_01397 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       125  (0.00697194); expected 358.6 (0.02)
Passed bias filter:                       99  (0.00552178); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 310.04
//
Query:       CCE27924.1  [L=306]
Description: uncharacterized protein CPUR_01398 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-17   62.2   0.0    4.5e-17   61.6   0.0    1.3  1  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 
    2.2e-05   24.9  11.7    2.2e-05   24.9  11.7    4.1  4  FoP_duplication  C-terminal duplication domain of Friend of P


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   5.1e-21   4.5e-17       1      70 []      90     159 ..      90     159 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 5.1e-21
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 l V n+++d+tee+L elFs +Gp+++++l +d+ g+s g+a+V+++ ke Ae+A+++++g + +g+++k
  CCE27924.1  90 LRVDNIHYDLTEEDLDELFSRIGPVSKLNLRYDRAGRSEGTAYVTYDRKEHAEEAVRQFDGANANGQPIK 159
                 6799*************************************************************99986 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.0     0.017   1.5e+02      11      37 ..      19      45 ..       4      57 .. 0.50
   2 ?    2.9   0.1     0.018   1.6e+02      17      54 ..      70     106 ..      61     109 .. 0.60
   3 ?   -0.6   0.3      0.23   2.1e+03      15      31 ..     186     202 ..     176     223 .. 0.47
   4 !   24.9  11.7   2.5e-09   2.2e-05       4      64 ..     219     278 ..     215     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.017
  FoP_duplication 11 gggrggrrgrgrggrggrggrgrgrgg 37
                     +g r +r gr  ++r+++   + g ++
       CCE27924.1 19 NGPRHRRDGRDSRRRHQSEYPRDGVKK 45
                     344444444444433333333333222 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.018
  FoP_duplication  17 rrgrgrggrggrggrgrgrggrggrkkkkpltkeeLDa 54 
                      r   +r++r+  ++++ g + r + +    lt+e+LD+
       CCE27924.1  70 RAPAPRRRRQSPSSEKMGSKLRVD-NIHYDLTEEDLDE 106
                      333344444444444444444444.8889999999996 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.23
  FoP_duplication  15 ggrrgrgrggrggrggr 31 
                      +g+r+r+++ +++ +  
       CCE27924.1 186 PGGRARSASPQNRLRDD 202
                      33333333333332222 PP

  == domain 4  score: 24.9 bits;  conditional E-value: 2.5e-09
  FoP_duplication   4 grrarrggggrggrrgrgrggrggrggrgrgrggrggrkkkkpltkeeLDaeLDaYmgkkt 64 
                      +++a+r++ggr  +r+ g+++++ + g+++ rgg+++ + + ++t++eLDae+ +Y g ++
       CCE27924.1 219 KNSAPRRRGGREEGRRPGARREREGNGHNGARGGGRS-NPRVKKTQDELDAEMADYFGGDS 278
                      5677888888888888888888888999999999999.9999**************99443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2197.76
//
Query:       CCE27925.1  [L=476]
Description: uncharacterized protein CPUR_01399 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3587.65
//
Query:       CCE27926.1  [L=1070]
Description: probable valine--tRNA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-224  747.1   0.8   1.7e-223  743.3   0.8    2.2  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
    5.1e-32  110.9   2.4    5.1e-32  110.9   2.4    3.0  3  Anticodon_1      Anticodon-binding domain of tRNA
    1.4e-13   50.4   0.0    9.2e-06   24.6   0.0    4.4  4  tRNA-synt_1g     tRNA synthetases class I (M)
      5e-12   45.7   6.4    1.8e-10   40.6   0.0    3.1  3  tRNA-synt_1_2    Leucyl-tRNA synthetase, Domain 2
    0.00029   21.0   5.9    0.00029   21.0   5.9    2.9  2  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
  ------ inclusion threshold ------
       0.18   11.1   0.0       0.18   11.1   0.0    2.3  2  tRNA-synt_1e     tRNA synthetases class I (C) catalytic domai
       0.24   11.3   0.7         11    6.0   0.0    2.6  2  DUF1730          Domain of unknown function (DUF1730)


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  743.3   0.8  6.6e-227  1.7e-223       2     602 .]     122     744 ..     121     744 .. 0.98

  Alignments for each domain:
  == domain 1  score: 743.3 bits;  conditional E-value: 6.6e-227
  tRNA-synt_1   2 lyekWeeedvfkkelekeke...kkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklg 96 
                  +y++We+e++fk+e+++e +   + +f++v +PP+vtGslH+Ghal  +l+d++ir++rm+Gk++l++pG+DhaG+a++++vek+l++kekk+r++lg
   CCE27926.1 122 WYDWWEKEGFFKPEFTAEGKvkeAGSFVIVHPPPNVTGSLHMGHALGDSLQDLMIRWNRMNGKTTLWLPGCDHAGIATQSVVEKMLWRKEKKTRHDLG 219
                  9*************998876512456************************************************************************ PP

  tRNA-synt_1  97 reefrekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkk.......... 184
                  re+f+e v+ewk+ y+++i+k+++++G s+D++re++T+d +l++av e+fvrl+++g+iyr+++lvnw+t+l+tals+lEve+k+ +          
   CCE27926.1 220 REKFVETVWEWKEDYHKRINKALTHMGGSFDWSREAFTMDANLSAAVAETFVRLHEEGIIYRANRLVNWCTHLNTALSNLEVENKELTgrtllevpgy 317
                  ************************************************************************************************** PP

  tRNA-synt_1 185 ......dalihvafpladkeevklviaTTtPeTllgdtavavnpeldyvitkeklilaeallkslvkkesekkiledergkeLegkevelpl.vnrki 275
                        ++++h+++p+++++e ++++aTT+ eT+lgd ++av+p+                               d r+k+L+gk++ +p+  +rk+
   CCE27926.1 318 ekkvefGVIVHFKYPIEGSDE-TIEVATTRIETMLGDSGIAVHPN-------------------------------DARYKHLVGKNAVHPFiPGRKL 383
                  *********************.***********************...............................9***************6689** PP

  tRNA-synt_1 276 piiaddyvdkeaGtGvVkiaPahdedDyevgkkynlevinildedgtlteeaaefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkpii 373
                  pi+ad+yv++e+GtG+Vk++Pahd++D+++g+k+nle+inil++dg ++e+a+ f+g+k+fd r+++ ++lkekgl++ ++++ ++vp c +s ++i+
   CCE27926.1 384 PIVADEYVEMEFGTGAVKLTPAHDPNDFNLGQKHNLEFINILTDDGLMNENAGAFKGQKRFDVRYSIQDALKEKGLYVDKKDNAMKVPQCTKSMDIIE 481
                  ************************************************************************************************** PP

  tRNA-synt_1 374 yrateqWfvrvkeladaalkave..kvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkalekea 469
                  + +++qW+vr+kela+ a+++v+  k+++ p+++e++y++wle+i+dWciSRq+wWGhr+p+++++ ++    + +   +  gr+ eeaekka++   
   CCE27926.1 482 PIMKPQWWVRMKELAEPAMQVVRdgKIKIRPDTAERSYFRWLEDINDWCISRQLWWGHRCPVYYANVEGAAKDTADNGLWFSGRTREEAEKKAAAALP 579
                  ***********************9*********************************************9999999****************999999 PP

  tRNA-synt_1 470 kdklkkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKs 567
                   +k+     +le+dedvlD+WFsSg+wpfstlg+p++ t++l++ +p+ +l++G+Di+++W+ar+i+l+l++tg++Pf ev++h+lvrd+eGrKmSKs
   CCE27926.1 580 GKKF-----TLEQDEDVLDTWFSSGLWPFSTLGWPNN-THDLDTLYPTTVLETGWDILFFWIARMITLGLKMTGKVPFSEVFCHSLVRDSEGRKMSKS 671
                  9888.....***************************9.************************************************************ PP

  tRNA-synt_1 568 lgNvidpldvik.....................................kygadalRltli.lsdvgrdinls 602
                  lgNvidpldvi+                                     ++gadalR+t+i  ++ g+dinl+
   CCE27926.1 672 LGNVIDPLDVISgiklqelhdkllqgnlhpnevekaakyqktafpdgipQCGADALRFTMInATTGGADINLD 744
                  *************************************************************788889999986 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   3.6      0.38   9.8e+02     116     151 ..      46      87 ..      19      88 .. 0.67
   2 !  110.9   2.4     2e-35   5.1e-32       1     149 [.     788     937 ..     788     941 .. 0.90
   3 ?   -3.2   0.3       2.8   7.1e+03      97     135 ..    1020    1066 ..    1009    1068 .. 0.54

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.38
  Anticodon_1 116 kele......eeevellkeivkairklrselkikpsselkvv 151
                  ke++      + e + +k++ +a++++++e+k+k +++++vv
   CCE27926.1  46 KERKkaekaaKLEAKKAKAAQMAANAANKEKKVKEKKPEEVV 87 
                  2221233444445555678999***************99885 PP

  == domain 2  score: 110.9 bits;  conditional E-value: 2e-35
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkra.aqevllevletllrllaPfmPfitEelwqr....ee 93 
                  +rwil+++n+++++ + a+++ +f+k  + +y+ ++ +lcd+y+e +k ++ + ++e++ + a ++l+++le+ l l++PfmP+itEe+wqr      
   CCE27926.1 788 ERWILHKMNSAARDLNIAIADREFQKSTTIIYKYWYAELCDVYIENSKAIIRDGTEEER-QsALQTLYTALESALTLIHPFMPYITEEMWQRlprrP- 883
                  69*************************************************87666555.66******************************96541. PP

  Anticodon_1  94 eelgkkesimlaewpe.kaeelekeleeeevellkeivkairklrselkikpsselk 149
                     +  +sim+a++p+ +++  ++e  e+++el+ +  ka+r+l +e+ +k +s + 
   CCE27926.1 884 --ADTTKSIMVAKYPQyTPDLDDPES-EAAYELVLACTKAARSLMAEYALKENSHVI 937
                  ..46679********87776667777.89**********************998865 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.8
  Anticodon_1   97 gkkesimlae.wpe.kaeel.ekele.....eeevellkeivkairk 135 
                   +k+e i+l + + e  ++   ++e++     ++ev+ ++e++k  ++
   CCE27926.1 1020 QKQEKILLDPtYKEkVSATVrQAEEQrladaQQEVASFQETIKQFEQ 1066
                   45566666665665333222422221344456666666666666555 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   3.6e-09   9.2e-06       6     136 ..     153     302 ..     148     305 .. 0.75
   2 !   11.6   0.1   3.3e-05     0.085     167     238 ..     471     542 ..     452     554 .. 0.80
   3 !    8.0   0.0   0.00041         1     312     346 ..     651     686 ..     603     701 .. 0.78
   4 ?   -4.3   0.0       2.2   5.7e+03     345     366 ..     722     743 ..     719     746 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.6e-09
                   --B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHH.....TTS-.....HHHHH.......HHHHHHHHHHHHHTT--- CS
  tRNA-synt_1g   6 alpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAek.....egvt.....peelv.......ekvheeikelfkklnisf 85 
                   + p ++g+lH+Gh+l     D ++R++r++g+ +l++ g D+ G++++   ek     e+ t      e++v       e++h++i++ +++++ sf
    CCE27926.1 153 PPPNVTGSLHMGHALGDSLQDLMIRWNRMNGKTTLWLPGCDHAGIATQSVVEKmlwrkEKKTrhdlgREKFVetvwewkEDYHKRINKALTHMGGSF 249
                   567799*********77778************************9998655432222133331111133444111222267999999********** PP

                   SEEEE..TTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-E CS
  tRNA-synt_1g  86 dkygr..ttseehkelvqeifkklkekgliyekeieqlycpkderflpdryve 136
                   d   +  t + + + +v+e f +l+e+g iy+ +  + +c++ ++ l++ +ve
    CCE27926.1 250 DWSREafTMDANLSAAVAETFVRLHEEGIIYRANRLVNWCTHLNTALSNLEVE 302
                   97655336777778999***************************999988776 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 3.3e-05
                   ............EEE.EEEEEE-GGGGHHHHHHHH.HH-TT.SHHHHHHHH.HHHHT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 167 pksaisgs..kpevketehlffklskfekklkewieeeeke.leenvkkivkewlkegLkdlaisrdldwGipvP 238
                   p+++ s +  +p++k   +++ +++++++   + ++  + +  ++ +++    wl++ ++d++isr+l wG + P
    CCE27926.1 471 PQCTKSMDiiEPIMK--PQWWVRMKELAEPAMQVVRDGKIKiRPDTAERSYFRWLED-INDWCISRQLWWGHRCP 542
                   555554441144555..88999*************8877778899999999****99.*************9998 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00041
                   -S-EEEE--EE.E--------------HHHHHHHH- CS
  tRNA-synt_1g 312 pkkvvaheylt.vegkKlSkSrgvvvkakealerld 346
                    ++v+ h+ +   eg+K+SkS g+v+++ +++  ++
    CCE27926.1 651 FSEVFCHSLVRdSEGRKMSKSLGNVIDPLDVISGIK 686
                   35566666664379**************99987766 PP

  == domain 4  score: -4.3 bits;  conditional E-value: 2.2
                   H-HHHHHHHHHHHS-TTS-EEE CS
  tRNA-synt_1g 345 ldadllRYylaaeapekkDldf 366
                   + ad+lR+ ++ ++    D+++
    CCE27926.1 722 CGADALRFTMINATTGGADINL 743
                   789*********9999999987 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.4   3.3         7   1.8e+04      70      81 ..      43      54 ..      21      82 .. 0.47
   2 !    8.0   0.0   0.00073       1.9      11      45 ..     328     362 ..     322     372 .. 0.84
   3 !   40.6   0.0   7.2e-14   1.8e-10      86     144 ..     370     429 ..     361     465 .. 0.89

  Alignments for each domain:
  == domain 1  score: -5.4 bits;  conditional E-value: 7
  tRNA-synt_1_2 70 esereletkeke 81
                   e e+e +++ek 
     CCE27926.1 43 ELEKERKKAEKA 54
                   333333333332 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00073
  tRNA-synt_1_2  11 eiefkveeseeklevfttrpdtlfGvtfvalapeh 45 
                    ++++++e+s+e++ev ttr +t+ G + +a+ p+ 
     CCE27926.1 328 HFKYPIEGSDETIEVATTRIETMLGDSGIAVHPND 362
                    5678899******************9999988876 PP

  == domain 3  score: 40.6 bits;  conditional E-value: 7.2e-14
  tRNA-synt_1_2  86 glkaihPit.gekipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikped 144
                    g +a+hP+  g+k+pi   +yv me+gtgav   Pahd +Df+  +k+nl+++++++ ++
     CCE27926.1 370 GKNAVHPFIpGRKLPIVADEYVEMEFGTGAVKLTPAHDPNDFNLGQKHNLEFINILTDDG 429
                    7899***999********************************************998544 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.5   7.4         7   1.8e+04      12      25 ..      43      56 ..      36      87 .. 0.58
   2 !   21.0   5.9   1.1e-07   0.00029       1      64 [.    1000    1063 ..    1000    1065 .. 0.97

  Alignments for each domain:
  == domain 1  score: -5.5 bits;  conditional E-value: 7
  Val_tRNA-synt_C 12 eLaklekeiervqk 25
                     eL+k +k +e+++k
       CCE27926.1 43 ELEKERKKAEKAAK 56
                     44444444444332 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.1e-07
  Val_tRNA-synt_C    1 DvekeraRLeKeLaklekeiervqkKLanpgFveKAPaeVVeeekaklaeleeqaeklkerLsk 64  
                       D+++e+a+ +K+++k +  +++ +k L  p + eK+ a+V ++e+++la+++++ +  +e +++
       CCE27926.1 1000 DLDAEIAKAQKKMDKSQMSVQKQEKILLDPTYKEKVSATVRQAEEQRLADAQQEVASFQETIKQ 1063
                       99******************************************************99999887 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   1.8       3.2   8.2e+03     117     162 ..      32      77 ..      12      83 .. 0.65
   2 ?   11.1   0.0   6.9e-05      0.18     235     282 ..     649     696 ..     623     706 .. 0.83

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 3.2
                   HTTSEEE-TTS-EEE-GGG-TTTTTTTT--HHHHHHT----S--S- CS
  tRNA-synt_1e 117 ekgyaYavsdgdvyfdvskkeeYgklskqnleelelgaegevseek 162
                   + g   + ++ ++  + +k e+ +kl+ ++ +  ++ a+ +++e+k
    CCE27926.1  32 DDGTPKVKTEKELEKERKKAEKAAKLEAKKAKAAQMAANAANKEKK 77 
                   4555555555666677777888888888888877777776665444 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.9e-05
                   S--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHS CS
  tRNA-synt_1e 235 kqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRlllls 282
                    ++ + f h+ +   eg+kmsksL+n+i   dv+   + ++l   ll+
    CCE27926.1 649 VPFSEVFCHSLVRDSEGRKMSKSLGNVIDPLDVISGIKLQELHDKLLQ 696
                   677889999999999*************99999998888888766665 PP

>> DUF1730  Domain of unknown function (DUF1730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0044        11      42      58 ..     230     246 ..     202     260 .. 0.83
   2 ?    2.9   0.2      0.04     1e+02       4      64 ..     880     952 ..     878     960 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0044
                 SSS-HHHHHHHHHHHHH CS
     DUF1730  42 lgrDYHkvlkkrLkkla 58 
                 + +DYHk ++k L ++ 
  CCE27926.1 230 WKEDYHKRINKALTHMG 246
                 89***********9876 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.04
                 HHHHSTT--EEEEEEEE.-S-----SSS-...........B..-EE-GGGSSS-HHHHHHHHHHHHHHHHHTT CS
     DUF1730   4 prellpgarsvivvaln.Ykppeaeeeke...........peegkisryAlgrDYHkvlkkrLkklaerleee 64 
                 pr+  ++++s+ v+ ++ Y p+ +++e+e           + +  ++ yAl +  H ++++  ++ ++  ++e
  CCE27926.1 880 PRRPADTTKSIMVAKYPqYTPDLDDPESEaayelvlactkAARSLMAEYALKENSHVIVQAYTDAALKTCHAE 952
                 6666788999999998767544444444445567777776566889**********99998887777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1070 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2094  (0.116794); expected 358.6 (0.02)
Passed bias filter:                      864  (0.0481901); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.02u 0.30s 00:00:01.32 Elapsed: 00:00:00.49
# Mc/sec: 6545.49
//
Query:       CCE27927.1  [L=732]
Description: probable U5 snRNP 100 kD protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-47  161.5   0.0    5.1e-47  159.9   0.0    1.8  2  DEAD            DEAD/DEAH box helicase
    2.8e-28   98.5   0.2    3.9e-27   94.8   0.1    2.5  3  Helicase_C      Helicase conserved C-terminal domain
    0.00026   21.1   0.0    0.00072   19.6   0.0    1.7  1  ResIII          Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.056   13.2   0.0       0.12   12.1   0.0    1.5  1  PRAI            N-(5'phosphoribosyl)anthranilate (PRA) isomer
      0.089   12.5   0.9       0.18   11.4   0.9    1.4  1  Stk19           Serine-threonine protein kinase 19
       0.12   12.1   0.0       0.23   11.2   0.0    1.4  1  DUF3334         Protein of unknown function (DUF3334)
        1.4    8.2   0.0        1.4    8.2   0.0    3.3  4  CMS1            U3-containing 90S pre-ribosomal complex subun


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   0.0     2e-50   5.1e-47       1     175 [.     304     502 ..     304     503 .. 0.95
   2 ?   -1.7   0.0      0.81   2.1e+03      43     104 ..     549     610 ..     521     617 .. 0.64

  Alignments for each domain:
  == domain 1  score: 159.9 bits;  conditional E-value: 2e-50
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlsk 93 
                 t+iQ++aip++l+ +d+++ a TGsGKT+afl+p+l  +++        +++gp ali++PtreL++q+ ++++kf ++++ r+++i+gg++ ++q  +
  CCE27927.1 304 TPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISDLpplteaIKNDGPYALILAPTRELVQQIETEARKFAEPLGFRCVSIVGGHSLEEQAFA 402
                 89**********************************999777**99887999*********************************************** PP

                 HHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTT..................SEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxx RF
        DEAD  94 ldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklq..................rqvivlSATlpkdvk 174
                 l+ng++i+v+tpgrl+d ++++ l lsq+ ++++DEadr+ d gf++ +n+il +lp  +++   +                  rq+++ +AT+p  v+
  CCE27927.1 403 LRNGAEIIVATPGRLVDCIERRLLVLSQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPDTDdaenaqlmkrhlggrdkyRQTMMYTATMPPVVE 501
                 ********************************************************866555444489***************999*********8887 PP

                 H CS
                 x RF
        DEAD 175 k 175
                 +
  CCE27927.1 502 R 502
                 6 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.81
                 TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
        DEAD  43 kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdivvgt 104
                 k++ +p +++ +  +  +  +++++++++   +++++   +++++++ l+++++g ++++v+t
  CCE27927.1 549 KNDYAPPIIVFVNIKRNCDAVARDIRSMGWS-TVTLHGSKTQEQREQALAAVRSGqTQVLVAT 610
                 5555666666666666666666666666664.2333333445555555555565568888877 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.3   1.1e+04      90     108 ..     223     241 ..     220     241 .. 0.80
   2 ?    0.4   0.0      0.33   8.3e+02      13      59 ..     353     403 ..     343     413 .. 0.74
   3 !   94.8   0.1   1.5e-30   3.9e-27       4     111 .]     541     648 ..     538     648 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.3
                 ESSSSSSHHHHHHHHTTSS CS
  Helicase_C  90 nfdlprnvtsyiqriGRtg 108
                 + d+ r  ++++qr+ Rtg
  CCE27927.1 223 MEDFYRARAKAKQRAERTG 241
                 567777788999***9997 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.33
                 TTTTSEEEEEESSHHHHHH....HHHHHHHTTSTEEEESTTSTHHHHHHHH CS
  Helicase_C  13 eeeggkilifvntidrlek....vklllekkgikvavlhgelpqnereeil 59 
                 +++g  +li ++t++ +++    ++ + e  g++++ + g  + +e+  +l
  CCE27927.1 353 KNDGPYALILAPTRELVQQieteARKFAEPLGFRCVSIVGGHSLEEQAFAL 403
                 57788899*******6655555777776777*****999988888876555 PP

  == domain 3  score: 94.8 bits;  conditional E-value: 1.5e-30
                 HHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   4 eallellkleeeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                 ++l e+l ++     i++fvn +++++  ++ +  ++ g ++++lhg+ +q++re++l++ ++g+++vL+atd a+rGid+p+v+lV+nf++  n++sy
  CCE27927.1 541 KRLQEILAKNDYAPPIIVFVNIKRNCDAvARDI--RSmGWSTVTLHGSKTQEQREQALAAVRSGQTQVLVATDLAGRGIDVPDVSLVVNFNMASNIESY 637
                 567788888889999***********9765555..3359************************************************************ PP

                 HHHHTTSSSTT CS
  Helicase_C 101 iqriGRtgRag 111
                  +riGRtgRag
  CCE27927.1 638 THRIGRTGRAG 648
                 *********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.8e-07   0.00072      27     156 ..     320     457 ..     300     463 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.8e-07
                 EEEEESTTSTHHHHHHHHHHHH-S..............-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHH CS
      ResIII  27 glikmaTGtGKTlvaaklierllkkgkee.........kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsld 115
                 ++ ++ TG+GKT   +     + +  +            +l+l+p+++l++q ++e +kf+++   +   +v g + ++     ++ ++i+v+t  +l 
  CCE27927.1 320 LIGVAVTGSGKTAAFLLPLLVYISDLPPLteaikndgpYALILAPTRELVQQIETEARKFAEPLGFRCVSIVGGHSLEEqAFALRNGAEIIVATPGRLV 418
                 555778******98855444444433322477888899***********************99877645555555544433346899************ PP

                 HTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT CS
      ResIII 116 adseeeeeeseellrdrfdviiiDEaHrlgak...kswreilek 156
                   +     e+  l  ++  +ii+DEa r+ +    +s+++il++
  CCE27927.1 419 DCI-----ERRLLVLSQCCYIIMDEADRMIDLgfeESVNKILDA 457
                 ***.....88999999999********99995443466666655 PP

>> PRAI  N-(5'phosphoribosyl)anthranilate (PRA) isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.6e-05      0.12      18      94 ..     525     599 ..     511     624 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.6e-05
                 HTSSEEEEE--TTBTTB--HHHHHHHCCCS--EEEEEESSS-HHHHHHHHHHCTECEEEE-CGG.-HHHHHHHHHHS CS
        PRAI  18 agadelglifaesskrevseeqaqellekvpaklVGVfvNqpieevlriaqelgldvvQLHGdedeqeyeellktel 94 
                    ++++++  e  +r+   +++ +   ++p+ +V V    + + v r ++++g   v LHG+ ++++ e++l  ++
  CCE27927.1 525 TVEQRVEFVSGED-RRKKRLQEILAKNDYAPPIIVFVNIKRNCDAVARDIRSMGWSTVTLHGSKTQEQREQALA-AV 599
                 4445556666666.555555666666677777677777778899********************6655665555.43 PP

>> Stk19  Serine-threonine protein kinase 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.9   7.1e-05      0.18     178     225 ..     116     164 ..     112     166 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.1e-05
       Stk19 178 kskykEaleslLeerWeG.avegdkklsaakrkkwkefygldfewvLed 225
                 k++ +E+  slL++r+ G +v++++++sa k++ + +  +++few Led
  CCE27927.1 116 KKSAEEIEASLLRSRYLGpQVNKQSNFSAKKKRMRTTEKKFNFEWDLED 164
                 78889999********************99999999999********98 PP

>> DUF3334  Protein of unknown function (DUF3334)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     9e-05      0.23      62     130 ..     624     694 ..     620     696 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9e-05
     DUF3334  62 vvinfsaeaaleiyrsymlnmGl.peeelalshtsdevsnvlGelmnqivGdftgkvskelqts.itqnqP 130
                 +v+nf  ++ +e y++ + + G  +++ +a+++  +e ++vl +l   +  + ++kv +el+ +  +q++P
  CCE27927.1 624 LVVNFNMASNIESYTHRIGRTGRaGKSGVAITFLGNEDADVLYDLRQMLSKSAISKVPEELKRHeAAQSKP 694
                 589*****************99625889*****************98888899********8752567766 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   5.3       1.3   3.4e+03       7      32 ..      37      62 ..      26      85 .. 0.56
   2 ?   -4.7   2.4       4.7   1.2e+04      26      44 ..     106     124 ..      96     155 .. 0.57
   3 ?   -1.2   0.2      0.42   1.1e+03      28      54 ..     198     224 ..     192     237 .. 0.82
   4 ?    8.2   0.0   0.00055       1.4     166     210 ..     396     439 ..     336     463 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
        CMS1  7 krkaenkekgkkkksekkRskkkerk 32
                k k+e++e  +k+ +e +R +++erk
  CCE27927.1 37 KAKQEEEERRQKSAEEAQRRREEERK 62
                23333333333333344555555554 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 4.7
        CMS1  26 skkkerkkgklketqDvka 44 
                 +kk+++k+g+ k+ ++++a
  CCE27927.1 106 EKKNDKKNGEKKSAEEIEA 124
                 3333344444333333333 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.42
        CMS1  28 kkerkkgklketqDvkaglteavalqd 54 
                 ++ rk++ l e +Dv+ g ++a  +++
  CCE27927.1 198 RRARKRARLIEERDVENGKERANGIME 224
                 5679999999******99887776665 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.00055
        CMS1 166 leesvtylkksrigiavGtpgRildLleeeslsvdeLkrivlDas 210
                 lee+   l ++   i v tpgR++d +e   l +++  +i++D +
  CCE27927.1 396 LEEQAFAL-RNGAEIIVATPGRLVDCIERRLLVLSQCCYIIMDEA 439
                 55554444.45677899*************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1543  (0.0860617); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.43
# Mc/sec: 5109.12
//
Query:       CCE27928.1  [L=162]
Description: probable ribosomal protein YmL25, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-39  134.6   2.6    2.7e-39  134.4   2.6    1.1  1  Mitoc_mL59      Mitochondrial ribosomal protein mL59
  ------ inclusion threshold ------
      0.076   13.5   2.0       0.12   12.9   0.7    2.0  2  Ribosomal_L35p  Ribosomal protein L35


Domain annotation for each model (and alignments):
>> Mitoc_mL59  Mitochondrial ribosomal protein mL59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   2.6   3.1e-43   2.7e-39       3     129 .]      22     151 ..      20     151 .. 0.97

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 3.1e-43
  Mitoc_mL59   3 lkrffareppsalsasaaka....arlpnPflptknpktgrWapPkySlRrqaeLvKaAkksgveellPpgpKstkfkeeraverglrvkgtagkkkmf 97 
                 l rf+ar pp++l+++ a++    ++ p+Pf p k+pktg+W +P yS+Rrqa+LvK+A+ +gveellP+++K t  + + +ve+glrvkgt g ++++
  CCE27928.1  22 LLRFLARWPPASLQPAGAPKthfqEQRPDPFSPYKHPKTGKWLDPVYSARRQANLVKMARMNGVEELLPETRKGTYTRLAYRVEHGLRVKGT-GVGQKV 119
                 89********999888777799*9899*****************************************************************.****** PP

  Mitoc_mL59  98 kGhkwERtkeerlekrrkaledmpkrirewke 129
                 kGh +ER++ + +ek rka+  mp +i++wk+
  CCE27928.1 120 KGHAYERHMIANMEKKRKAMLAMPGLIKAWKK 151
                 ******************************96 PP

>> Ribosomal_L35p  Ribosomal protein L35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.1     1e+04      37      46 ..      70      79 ..      58      86 .. 0.63
   2 ?   12.9   0.7   1.3e-05      0.12      12      47 ..     109     144 ..     108     151 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
  Ribosomal_L35p 37 tkrkrrlrkt 46
                    ++r+ +l k+
      CCE27928.1 70 ARRQANLVKM 79
                    4444444444 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.3e-05
  Ribosomal_L35p  12 RfkvtgsGkikrkkagkrHlltkKstkrkrrlrkta 47 
                     R+k tg G+   ++a+ rH++ ++ +krk  l  ++
      CCE27928.1 109 RVKGTGVGQKVKGHAYERHMIANMEKKRKAMLAMPG 144
                     89999***9999*****************8887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1279.38
//
Query:       CCE27929.1  [L=206]
Description: related to Caj1p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-18   66.6   0.4    1.7e-18   66.1   0.4    1.3  1  zf-CSL    CSL zinc finger
      3e-09   36.8   0.1      7e-05   22.9   0.1    2.3  2  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> zf-CSL  CSL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.4   1.9e-22   1.7e-18       2      59 .]     128     187 ..     127     187 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 1.9e-22
                 EEEGGGSEEETTTTEEEEEETTSSE..EEEEHHHHHTT....--EEEETTSSEEEEEE-- CS
      zf-CSL   2 eveledfefdeeeesyyypCRCgde..FelteedleegaegaevvvqCssCSLwikVkfa 59 
                 +v+l+d+ f+e +e +y+ CRCg+e  + ++eedl e ++++ +v++C++CSLw++V+fa
  CCE27929.1 128 NVDLDDLPFEEGTERWYRACRCGNErgYLFSEEDLGEVEDEGVLVLGCQDCSLWLRVHFA 187
                 799******************************************************995 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   7.8e-09     7e-05       1      34 [.       6      49 ..       6      55 .. 0.76
   2 !   11.8   0.0   2.2e-05       0.2      43      63 .]      85     105 ..      73     105 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 7.8e-09
                HHHHHHTSSTT...G-.......HHHHHHHHHHHHHHHSTTTSC CS
        DnaJ  1 dyYeiLgvskd...as.......edeIkkaYrklalkyHPDknp 34
                ++Y iLg++++   +s       ++ +kkaY++  l++HPDk++
  CCE27929.1  6 THYTILGLTPSllnSShqkgpspSALLKKAYHRALLRHHPDKQA 49
                58******999665234445544667***************994 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  43 FkeineAyevLsdpekRkqYD 63 
                   +i++A+ vLs p +R++YD
  CCE27929.1  85 IDQIATAFAVLSSPAQRASYD 105
                 579*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1528.30
//
Query:       CCE27930.1  [L=270]
Description: probable 14-3-3-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.7e-107  355.8   4.5   8.9e-107  355.6   4.5    1.0  1  14-3-3    14-3-3 protein


Domain annotation for each model (and alignments):
>> 14-3-3  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.6   4.5    5e-111  8.9e-107       1     222 []       9     231 ..       9     231 .. 0.99

  Alignments for each domain:
  == domain 1  score: 355.6 bits;  conditional E-value: 5e-111
                 HHHHHHHCCHHHHHHHHHCHHHHCSS---HCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCTCC.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
      14-3-3   1 laklaeqaeryddmveymkkvvelkeeLskeernlLsvayKnvvgarRaswrvlssieqkeeske.ekkvelikeyrekiekeLkeiceevlelldktl 98 
                 laklaeqaery++mv+ mk v++++++L++eernlLsvayKnv+garRaswr+++sieqkeesk+ +++v+likeyr+kie eL++ice++l++ldk+l
  CCE27930.1   9 LAKLAEQAERYEEMVDNMKIVASEDRDLTVEERNLLSVAYKNVIGARRASWRIVTSIEQKEESKGnSSQVTLIKEYRQKIEAELAKICEDILDVLDKHL 107
                 69**************************************************************99999****************************** PP

                 HCH.-SHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHTTTGCC-HHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHCCHCCCC CS
      14-3-3  99 ipkatseeskvfylkmkgDyyRYlaEfaegeekkeaaekakeaYeeAleiakkelqpthpirLglaLNySVflyeilnspekAcelakkafdeaiaeld 197
                 ip+a+s eskvfy+kmkgDy+RYlaEfa g+ +ke+a+++ eaY++A+e+a++el+pthpirLglaLN+SVf+yeiln p++Ac+lak+afd+aiaeld
  CCE27930.1 108 IPSAKSGESKVFYHKMKGDYHRYLAEFAIGDRRKESADQSLEAYKAATEVAQTELPPTHPIRLGLALNFSVFYYEILNAPDQACHLAKQAFDDAIAELD 206
                 *999*********************************************************************************************** PP

                 CS.TTTHHHHHHHHHHHHHHHHHHC CS
      14-3-3 198 elseesykdstlilqlLrdnltlWt 222
                 +lseesykdstli+qlLrdnltlWt
  CCE27930.1 207 TLSEESYKDSTLIMQLLRDNLTLWT 231
                 ************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2070.48
//
Query:       CCE27931.1  [L=102]
Description: related to H+-transporting ATP synthase inhibitor precursor, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-30  104.2   0.9    5.4e-30  103.7   0.9    1.1  1  IATP      Mitochondrial ATPase inhibitor, IATP


Domain annotation for each model (and alignments):
>> IATP  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   0.9     3e-34   5.4e-30       1      96 [.       1      88 [.       1      89 [. 0.97

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 3e-34
        IATP  1 llrqtlaktltasrpvsaasfsvaarrmgEgdsGapkgtGggGsireagdafgkrEaAsEeeyirqrekekLaeLkeklaeqkeHleeleeHieai 96
                +l +t+akt+  +rp+ +a+f+++ar+m+ gd+Gap++tGg      +gdaf++rE+AsE+ +irqre+ek+++L+++++eqk+Hl++l++H ++i
  CCE27931.1  1 MLSTTFAKTA-SLRPL-RAAFTTTARAMAAGDTGAPPKTGG------QGDAFQRRERASEDLAIRQRENEKMQTLRNQIREQKQHLDRLSDHLDEI 88
                899*******.99**7.889*********************......99*********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1885  (0.105137); expected 358.6 (0.02)
Passed bias filter:                     1104  (0.0615762); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 715.96
//
Query:       CCE27932.1  [L=639]
Description: related to nuclear pore protein NSP1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-36  124.5   2.8    1.7e-36  124.5   2.8    1.7  2  Nsp1_C           Nsp1-like C-terminal region
    0.00035   21.4  44.9     0.0019   19.0  20.0    6.1  3  Nucleoporin_FG   Nucleoporin FG repeat region
  ------ inclusion threshold ------
      0.053   13.6   2.2       0.13   12.3   2.2    1.8  1  MAS20            MAS20 protein import receptor
       0.34   10.6   7.8        1.3    8.8   0.5    2.1  2  DUF4201          Domain of unknown function (DUF4201)
       0.56   10.4   3.5       0.43   10.8   0.9    2.0  2  PI_PP_I          Phosphoinositide phosphatase insertion domai
        1.3    9.0   7.3          2    8.4   0.0    3.0  2  MIP-T3_C         Microtubule-binding protein MIP-T3 C-termina
        1.4    9.0   5.4         16    5.6   0.7    2.3  2  DUF1664          Protein of unknown function (DUF1664)
        1.4    8.7  10.4        2.1    8.1   9.8    1.5  1  ERM              Ezrin/radixin/moesin family
        1.5   10.0   5.3          7    7.9   2.4    3.0  3  SOGA             Protein SOGA
        2.7    7.8   7.0       0.54   10.0   1.2    2.1  2  Mer2             Mer2
        3.5    8.6   6.6        2.2    9.3   0.5    3.3  3  tRNA_synt_1c_R2  Glutaminyl-tRNA synthetase, non-specific RNA
        6.1    7.0   9.5         21    5.3   9.5    1.9  1  CENP-Q           CENP-Q, a CENPA-CAD centromere complex subun


Domain annotation for each model (and alignments):
>> Nsp1_C  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   2.8   1.2e-39   1.7e-36       5     109 ..     416     520 ..     412     527 .. 0.92
   2 ?   -3.2   0.0       4.9   7.3e+03      26      46 ..     542     562 ..     538     579 .. 0.57

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 1.2e-39
      Nsp1_C   5 tveiapsaaslknktldelinkWtteLeeqekeFeeqakkvneWDrvLvengekIskLysevleaeqeqnkidqeLeyiesqqdeLeslLdnyEkelee 103
                 t+++    a lknkt+++++++W+ +L++++keF+eqa+ v++WD  Lv+ngekI+kLy +++eae+++++i+++L  +esqq+eLe++L++yE+e+++
  CCE27932.1 416 TTGPISEMARLKNKTMEDIVTRWASDLTKYQKEFKEQATAVSSWDCNLVNNGEKIQKLYLDTFEAERASHEIERQLAAVESQQEELEAWLNRYESEMQD 514
                 5555545555***************************************************************************************** PP

      Nsp1_C 104 llskle 109
                 +++k+ 
  CCE27932.1 515 MFAKQI 520
                 998775 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.9
      Nsp1_C  26 kWtteLeeqekeFeeqakkvn 46 
                 k t+ L+e+++  ++  k++n
  CCE27932.1 542 KLTQHLDEKSRDLSKMVKEIN 562
                 444444444444444444444 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0  20.0   1.3e-06    0.0019       1      91 []     182     270 ..     182     270 .. 0.81
   2 !   16.8  16.9   6.2e-06    0.0092       7      90 ..     261     349 ..     259     349 .. 0.67
   3 ?   -0.3  19.1       1.3     2e+03      13      86 ..     337     409 ..     323     418 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.3e-06
  Nucleoporin_FG   1 glFGaaatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqtta.tgglFGstaataqqttsgglFG 91 
                     ++FG  +++++ ++  ++s+t++++ +lF  s+t++ ++s+++   a++  +++++lFG+++a+++++   ++lFG+++a++  +++++lFG
      CCE27932.1 182 SVFG--TQPKTDSAADTQSATTPAKPSLFMPSTTPAGAPSTTTTESASAPGTSATSLFGGAAAKPASSDsASSLFGGKQADT-GSSATSLFG 270
                     5799..77777888888888889*******666666666666344444899999********999998899*****999987.799*****9 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 6.2e-06
  Nucleoporin_FG   7 atstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqtta.tgglFGstaataqq.....ttsgglF 90 
                     + s++++lFG++ + ++s+++lFGa+++++a+a+++++  +++++ ++++lFG++  ++++++ +++   +++++  +     +ts+++F
      CCE27932.1 261 TGSSATSLFGKKDAPPSSASSLFGAATSNAAPATSSTASPTKTTPDSANSLFGAKVGEKASEKaSSSAATESTPAP-SstdasSTSKSMF 349
                     567899******************55555555555544444499999*******9988887764333333333222.2355555555565 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.3
  Nucleoporin_FG  13 glFGststtatstgglFG..asstatatasggglfgatsqtaasgglFGstnattqtta.tgglFGstaataqqtts 86 
                     +   ++st ++s  ++FG   ++++ ++a+   +      ++++ +lFG+++at ++++ +    G++++++q+t++
      CCE27932.1 337 SSTDASST-SKSMFSMFGggGAKSKDTPATDEPSA---GPSTSAASLFGAKTATDTAAKnGDESKGEAKPANQTTEA 409
                     22222222.46667788864333333333333334...45899999*****99999988777778877777765433 PP

>> MAS20  MAS20 protein import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.2   8.9e-05      0.13      45     102 ..     482     543 ..     441     560 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.9e-05
       MAS20  45 eaekaekkkkealeeakee....lptdaeevekfFleevqlGEellaqgeeeeaaehlynAl 102
                 +a+++ +++ +a+e+++ee    l + ++e++ +F +++  GE+l+  ++e+e + +l+  l
  CCE27932.1 482 RASHEIERQLAAVESQQEEleawLNRYESEMQDMFAKQIGPGEQLAGPDQERERTYKLAEKL 543
                 2222222222233333333333677999******************9988888888877655 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.7    0.0092        14      51     141 ..     428     518 ..     422     521 .. 0.87
   2 ?    8.8   0.5   0.00084       1.3      52     120 ..     541     612 ..     537     620 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0092
     DUF4201  51 nqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrvP 141
                 n+++++ + +   +L + +k  + +  a++ + ++l  + ++ ++l  ++ e e+  ++++++l  v+ + + l++  ++ +++ +++++ 
  CCE27932.1 428 NKTMEDIVTRWASDLTKYQKEFKEQATAVSSWDCNLVNNGEKIQKLYLDTFEAERASHEIERQLAAVESQQEELEAWLNRYESEMQDMFAK 518
                 555555555666899999********************************************************99999999999998875 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00084
     DUF4201  52 qalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselk...kelkekeerlaklrkelykvkle 120
                 ++l+++++e++ +L+++ k +++ + +l+   + +++l++ ++ l+   ++l+ ++++  +l+++++ +++ 
  CCE27932.1 541 EKLTQHLDEKSRDLSKMVKEINDISGTLSKGPKTEDALSQIVRVLNghlTQLQWIDQNASALQAKVTMAQKS 612
                 689**********************99999888888777766655511155555666777777766666665 PP

>> PI_PP_I  Phosphoinositide phosphatase insertion domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   0.00029      0.43       3      79 ..     437     516 ..     436     522 .. 0.86
   2 ?   -1.0   0.1       1.4   2.1e+03      22      54 ..     574     606 ..     540     621 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00029
                 HHHHCS-HHHHHHHHC...--TT--SHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHHHHCT-SS--HHHHTS-HHHHHHH CS
     PI_PP_I   3 kWfrkLeeyqqaYfln...leskeaslkklkqdlnqfllkWeeikktslsLeedLnkiannktplPsWfnelskaqqell 79 
                 +W  +L++yq+++  +   + s   +l +   +++++ l   e ++ s ++e +L +++++++ l +W+n+ + + q+++
  CCE27932.1 437 RWASDLTKYQKEFKEQataVSSWDCNLVNNGEKIQKLYLDTFEAERASHEIERQLAAVESQQEELEAWLNRYESEMQDMF 516
                 59999******9988754455556666777788999999999999******************************99996 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
                 T--SHHHHHHHHHHHHHHHHHHHHH-SSHHHHH CS
     PI_PP_I  22 keaslkklkqdlnqfllkWeeikktslsLeedL 54 
                 +e+ l+++ + ln  l++ + i ++++ L++  
  CCE27932.1 574 TEDALSQIVRVLNGHLTQLQWIDQNASALQAKV 606
                 445555666666666666666666666665555 PP

>> MIP-T3_C  Microtubule-binding protein MIP-T3 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0013         2     100     151 ..     422     474 ..     416     477 .. 0.86
   2 ?   -0.3   4.5      0.62   9.3e+02      80     105 ..     494     519 ..     488     570 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
    MIP-T3_C 100 elaeerrateea.leplkaqlaeleeaIkdqkekisnvrakilkNeakiqkll 151
                 e+a+ ++ t+e+ + +    l + +++ k+q   +s    ++++N +kiqkl+
  CCE27932.1 422 EMARLKNKTMEDiVTRWASDLTKYQKEFKEQATAVSSWDCNLVNNGEKIQKLY 474
                 56666677766526789999*******************************97 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.62
    MIP-T3_C  80 idsMqrELemWrseyrqqaeelaeer 105
                 ++s q+ELe W + y+++++++  ++
  CCE27932.1 494 VESQQEELEAWLNRYESEMQDMFAKQ 519
                 78999**********99999987655 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.7     0.011        16      35     122 ..     427     510 ..     419     519 .. 0.66
   2 ?    5.4   0.3     0.012        18      69     121 ..     541     593 ..     530     597 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.011
     DUF1664  35 TkrslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                  ++ ++d v++ +++l++ +++ +++       + + d++l ++ e ++++  +  e+++  +ei++++ +v++  e+le+ l+r e+
  CCE27932.1 427 KNKTMEDIVTRWASDLTKYQKEFKEQATA----VSSWDCNLVNNGEKIQKLYLDTFEAERASHEIERQLAAVESQQEELEAWLNRYES 510
                 57788888888888888888887776554....4556666666666666666677777777777777777777777766666666554 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.012
     DUF1664  69 drvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 +++ ++lde ++  +++ +e++++++ ls+  +  ++++++v+ l+++l++++
  CCE27932.1 541 EKLTQHLDEKSRDLSKMVKEINDISGTLSKGPKTEDALSQIVRVLNGHLTQLQ 593
                 678899999999999999***************************99999875 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   9.8    0.0014       2.1      13     134 ..     434     569 ..     422     616 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0014
         ERM  13 rLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarle..............ee 97 
                   ++  ++  k q++ +e+   +   + ++    e+ ++L  +  eae++  +++++ ++ e+++e+le+ l+++e+e++++               +e
  CCE27932.1 434 IVTRWASDLTKYQKEFKEQATAVSSWDCNLVNNGEKIQKLYLDTFEAERASHEIERQLAAVESQQEELEAWLNRYESEMQDMFakqigpgeqlagpdQE 532
                 555555556666666666666666666666666666666666666666666666666666666666666666666666666666666666666666699 PP

         ERM  98 serkeeeaerLkeeleeareaeeeakekllealstps 134
                 +er  + ae+L ++l e  +++ ++ +++ +++ t s
  CCE27932.1 533 RERTYKLAEKLTQHLDEKSRDLSKMVKEINDISGTLS 569
                 99999*****************999999999887764 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1         1   1.6e+03      22      54 ..     427     459 ..     420     488 .. 0.68
   2 ?    7.9   2.4    0.0047         7      20      86 ..     488     559 ..     478     566 .. 0.67
   3 ?   -0.7   0.0       2.1   3.2e+03       8      34 ..     591     617 ..     587     620 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1
        SOGA  22 slseleeenkqlteeLnkyksklgeeessleee 54 
                 +   +e+   +  ++L+ky+ + +e+ +++++ 
  CCE27932.1 427 KNKTMEDIVTRWASDLTKYQKEFKEQATAVSSW 459
                 555667777777888999999988888877663 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0047
        SOGA  20 rrslseleeenkqlteeLnkyksklgeeessleeee....eassdsskeaelkeeLkla.rlqineLsgkvv 86 
                  r+l+ +e ++++l+  Ln+y s++++  +++   +    + +++ +++ +l e+L     ++ ++Ls+ v+
  CCE27932.1 488 ERQLAAVESQQEELEAWLNRYESEMQDMFAKQIGPGeqlaGPDQERERTYKLAEKLTQHlDEKSRDLSKMVK 559
                 699*********************998755443322234445555555556666664331444555666555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.1
        SOGA   8 hLqfveeEaeLlrrslseleeenkqlt 34 
                 +Lq+++  a+ l  +++  ++ n +l 
  CCE27932.1 591 QLQWIDQNASALQAKVTMAQKSNSSLG 617
                 899999999999999999999888875 PP

>> Mer2  Mer2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.5      0.29   4.4e+02      84     135 ..     449     508 ..     420     522 .. 0.43
   2 ?   10.0   1.2   0.00036      0.54      46     120 ..     540     614 ..     533     621 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.29
        Mer2  84 ekeikdlikdLsvkienqlskvskavldklk........vkkhksntdtksnLtellekk 135
                  ke  + +   + ++ n+ +k++k  ld+ +        +++     +++++L+  l+++
  CCE27932.1 449 FKEQATAVSSWDCNLVNNGEKIQKLYLDTFEaerasheiERQLAAVESQQEELEAWLNRY 508
                 233333444445555555555555555555544332222111112222222333333333 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00036
        Mer2  46 sskLinvlkenskeLlkvisklnellidlkeeesdnskekeikdlikdLsvkienqlskvskavldklkvkkhks 120
                 ++kL++ l e s+ L+k+++++n++ + l ++   ++   +i+ +++   ++++   ++ s  + + ++ +k +s
  CCE27932.1 540 AEKLTQHLDEKSRDLSKMVKEINDISGTLSKGPKTEDALSQIVRVLNGHLTQLQWIDQNASALQAKVTMAQKSNS 614
                 799**************************9999888888899888887666665544444444444444444444 PP

>> tRNA_synt_1c_R2  Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.57   8.5e+02      30      62 ..     318     350 ..     300     359 .. 0.50
   2 ?    9.3   0.5    0.0014       2.2      10      59 ..     377     430 ..     374     459 .. 0.58
   3 ?   -2.7   0.0       7.7   1.2e+04      14      18 ..     571     575 ..     527     581 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.57
  tRNA_synt_1c_R2  30 kkkkkkeekkkaakkakkekeeeesegaetiee 62 
                      +k+++k+++++a++++ ++++++ s++++++ +
       CCE27932.1 318 EKASEKASSSAATESTPAPSSTDASSTSKSMFS 350
                      333333333344444444444434455555544 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0014
  tRNA_synt_1c_R2  10 lelLGPKteaDnlkpkkkkkkkkkkkeekkkaakkakkekeee.....esegaet 59 
                      ++l G+Kt+ D++++ + +++k ++k+++++++++a   +++       + +++t
       CCE27932.1 377 ASLFGAKTATDTAAK-NGDESKGEAKPANQTTEATALGMSTTGpisemARLKNKT 430
                      5799*******6666.444444444455555544444444333444332333344 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 7.7
  tRNA_synt_1c_R2  14 GPKte 18 
                      GPKte
       CCE27932.1 571 GPKTE 575
                      56655 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   9.5     0.014        21      25     163 ..     475     609 ..     464     613 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.014
      CENP-Q  25 ldfeklldekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaearerkeklkkehvllqesdseelslleassdevlgeasgtvfsd 123
                 ld  ++ ++ ++ e+qL++ + + e+Lea +++ e + + + ++     ++      er+++ k +++l+q+ d+++++l +  ++      sgt ++ 
  CCE27932.1 475 LDTFEAERASHEIERQLAAVESQQEELEAWLNRYESEMQDMFAKQIGPGEQLAGPDQERERTYKLAEKLTQHLDEKSRDLSKMVKE--INDISGTLSK- 570
                 56666778889999999999999999999999999999999888777777777777777777777778888666665555555554..2233444444. PP

      CENP-Q 124 lepeldeellpllqqLgshLesmrgnlaqlegllpalers 163
                   p++++ l++++  L++hL  ++   ++   l+ +++ +
  CCE27932.1 571 -GPKTEDALSQIVRVLNGHLTQLQWIDQNASALQAKVTMA 609
                 .6888***************99986666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1536  (0.0856713); expected 358.6 (0.02)
Passed bias filter:                      742  (0.0413855); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.47
# Mc/sec: 4118.40
//
Query:       CCE27933.1  [L=619]
Description: uncharacterized protein CPUR_01407 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.2e-110  367.4   0.3   8.2e-110  367.4   0.3    2.8  3  DUF5102         Domain of unknown function (DUF5102)
  ------ inclusion threshold ------
       0.22   10.7   2.4       0.41    9.8   2.4    1.3  1  TMPIT           TMPIT-like protein
        5.6    7.4   8.7        1.1    9.7   3.5    2.4  2  Alanine_zipper  Alanine-zipper, major outer membrane lipoprot
        6.2    5.6  14.3        1.2    8.0  10.3    1.8  2  DUF812          Protein of unknown function (DUF812)


Domain annotation for each model (and alignments):
>> DUF5102  Domain of unknown function (DUF5102)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.8       1.3   5.8e+03      54      86 ..     231     264 ..     177     294 .. 0.48
   2 ?   -5.6   5.4         4   1.8e+04      10      27 ..     322     336 ..     311     339 .. 0.51
   3 !  367.4   0.3  1.8e-113  8.2e-110       1     289 []     340     619 .]     340     619 .] 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
     DUF5102  54 plldfesldlesdll.aaleeeldelfppseeke 86 
                 + +  +++d ++d+  +a++++++++ + ++e++
  CCE27933.1 231 ASTKSSDVDAKPDIVlEAVSDCVETVNDCEDEET 264
                 2233344455555555666666666665555433 PP

  == domain 2  score: -5.6 bits;  conditional E-value: 4
     DUF5102  10 egaeaeddddFgDFddgf 27 
                 +++e+e+ ddFgD   +f
  CCE27933.1 322 DEEEEEQVDDFGD---NF 336
                 2222344455555...44 PP

  == domain 3  score: 367.4 bits;  conditional E-value: 1.8e-113
     DUF5102   1 fgdDfddFeegaeaeddddFgDFddgfqeeeaeeseeaeeeepaepsasslsfplldfesldlesdllaaleeeldelfppseekeirslevplskesq 99 
                 fgdDfddFeega   +d++F+DF+dgfq+++    + a ++ p++   s+l+fp++df+ l  ++++l+a+e++l++lfpp+e  ++++ e +l+kes+
  CCE27933.1 340 FGDDFDDFEEGA---HDAEFDDFEDGFQQAQP---SLAVSRGPQPVLLSQLPFPIPDFDGLA-ADEVLSATEQCLNSLFPPEE-LDLPAPE-TLPKESS 429
                 79*********7...789***********995...33455556788899999**********.99**************9998.7999999.7****** PP

     DUF5102 100 iflterslsLwsqLvapPplqppnWirSriRRlfLvsLGvPvdLDeiLpaskqkklvLPsleleseksssssrssr...vkrlkqanasstsvdssasa 195
                 +flt+rs+sLwsqLvapPpl+pp+WirSr+RRlfLvsLGvPvdLDeiLpaskqkkl+LPsl+l+  +s  +  ssr     r++++nassts d+++++
  CCE27933.1 430 LFLTPRSASLWSQLVAPPPLAPPDWIRSRTRRLFLVSLGVPVDLDEILPASKQKKLILPSLHLRA-SSPGAGGSSRstsRVRRDSRNASSTSLDAQGKP 527
                 *************************************************************9966.3333333444423445566************99 PP

     DUF5102 196 kksrssssrrrgpppePelDlkaarrLcattdeaLkgltdeeLkehvkeLeelteeasevLeYwlkrrDekigdkEafegvIenLVkharkvrk 289
                 + s    ++r+gppp+PelDl+aar+Lc+ttdeaL g+t+eeL++hv++Le+++ +a++vLeYw+kr De igd+EafegvIenLVkhark rk
  CCE27933.1 528 TSS--GLKKRKGPPPAPELDLVAARYLCTTTDEALGGMTNEELQKHVEQLEAMQGTAQAVLEYWQKRADERIGDREAFEGVIENLVKHARKFRK 619
                 866..45799*********************************************************************************997 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.4   9.2e-05      0.41       5      73 ..     266     334 ..     258     341 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 9.2e-05
       TMPIT   5 eelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelke 73 
                 +++e++ +++eet++  +++ e++++  ++c ++++ +k  +  ++++ ++ +++ +eeeee+v++  +
  CCE27933.1 266 KDCEEQDHDCEETENDCEETAEDCKETADNCEETADDCKDTMDGCEETPNEAEENNDEEEEEQVDDFGD 334
                 567777788888888888888888888888888888888888888888888888888888888877655 PP

>> Alanine_zipper  Alanine-zipper, major outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.5   0.00025       1.1      11      58 ..     280     327 ..     270     330 .. 0.85
   2 ?   -1.0   0.2      0.54   2.4e+03       4      26 ..     566     588 ..     564     595 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00025
  Alanine_zipper  11 dqaeqdaaaaksaadeAkskAdeAaarAenAeaaAeeAqkaAeeaner 58 
                     +  e++a++ k++ad+++++Ad+ +++ +  e++ +eA++  +e +e+
      CCE27933.1 280 NDCEETAEDCKETADNCEETADDCKDTMDGCEETPNEAEENNDEEEEE 327
                     667889999999999999999999999999999999999999998876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.54
  Alanine_zipper   4 eelqakadqaeqdaaaaksaade 26 
                     eelq+ ++q+e+    a++  + 
      CCE27933.1 566 EELQKHVEQLEAMQGTAQAVLEY 588
                     78888888888887777775555 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  10.3   0.00026       1.2     268     381 ..     205     324 ..      82     330 .. 0.64
   2 ?   -3.0   0.0      0.56   2.5e+03     321     341 ..     565     584 ..     505     613 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00026
      DUF812 268 essasksksdlaellsefseksetdslktkgsrfthaeklqftke.....ela...kkaeteeelkkkreeeleelqeqieeleskieeleeeikkles 358
                 +s + ++++   ++l+ +++++ ++s  tk s ++ + ++ ++       +     +++ete++ ++ ++ + ee ++ +ee+ ++ +e +++ ++ ++
  CCE27933.1 205 ASMDTPRQDGPITVLEPVQSDHGESSASTKSSDVDAKPDIVLEAVsdcveT-VndcEDEETEKDCEE-QDHDCEETENDCEETAEDCKETADNCEETAD 301
                 234444555556677777888888899999999999999977555444431.134556666666644.4445666666666666666666655555555 PP

      DUF812 359 sikqveeeleeekeeneelekev 381
                 ++k +++ +ee+ +e ee+++e 
  CCE27933.1 302 DCKDTMDGCEETPNEAEENNDEE 324
                 55555555554444444443332 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.56
      DUF812 321 eeelkkkreeeleelqeqiee 341
                 +eel+k+ e +le++q   ++
  CCE27933.1 565 NEELQKHVE-QLEAMQGTAQA 584
                 222222222.22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1341  (0.074795); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.42
# Mc/sec: 4391.97
//
Query:       CCE27934.1  [L=506]
Description: probable translation initiation factor eIF-2 gamma chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-33  114.4   0.3      5e-33  113.2   0.3    1.7  1  eIF2_C        Initiation factor eIF2 gamma, C terminal
    8.2e-23   81.0   1.5    1.2e-21   77.2   1.5    2.2  1  GTP_EFTU      Elongation factor Tu GTP binding domain
      3e-09   37.1   0.3    7.2e-09   35.9   0.3    1.7  1  GTP_EFTU_D2   Elongation factor Tu domain 2
     0.0037   17.3   0.0       0.01   15.9   0.0    1.7  1  MMR_HSR1      50S ribosome-binding GTPase
     0.0072   16.3   0.8      0.021   14.9   0.1    2.0  2  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
  ------ inclusion threshold ------
      0.017   15.1   0.3       0.15   12.0   0.1    2.1  2  RsgA_GTPase   RsgA GTPase


Domain annotation for each model (and alignments):
>> eIF2_C  Initiation factor eIF2 gamma, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.3   1.7e-36     5e-33       2      86 .]     407     495 ..     406     495 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 1.7e-36
                 EEEEEEEE-SBESSSSSC..CC..-----TTEEEEEEETTEEEEEEEEEEESSEEEEEEEEEEE-STTEEEEEEEEETTSEEEEEEEEE CS
      eIF2_C   2 eleieyellerlvgvkee..kk..veklkkkEvLmlniGsastggvvtsvkkdeakvkLkkPvcaekgekialsRrvekrWrLiGwGei 86 
                 e+e++++ll+rl+gv++   k+  v+kl+++E +m+niGs+stg++v+++k+d ak+ L +P+c+++gek+alsRr+ek+WrLiGw++i
  CCE27934.1 407 EIEVNFYLLRRLLGVRTAdgKQakVAKLAQNEFIMVNIGSTSTGAKVAAIKNDAAKLVLVSPACTNIGEKVALSRRIEKHWRLIGWATI 495
                 89**************99662256**************************************************************997 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   1.5     4e-25   1.2e-21       3     193 ..      78     281 ..      76     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 4e-25
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE...................................TT CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle...................................ke 66 
                 ++nig+ighv hGK+T++ ++                     + k+E  r iTik   ++ +                                   + 
  CCE27934.1  78 TINIGTIGHVAHGKSTVVKAISGVQTV---------------RFKNELIRNITIKLGYANAKiykcdspecprpgcyrsyksekevdppcerdgcsgTY 161
                 68*****************99844444...............345566666666665555555566666666666667777777777888888876547 PP

                 CSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.STHHHHHHHHHHHHTTTE.EEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
    GTP_EFTU  67 tkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.vepqteevlrlalkegvp.iivfiNKmDrlkaelkeiveevkqklsrkeeklekygek 163
                    ++++++D+PGH   ++++  g++v+D a+l+++ +e  ++pqt e+l  +  +++  ii++ NK+D +++e  +++ e   k+      ++  ++ 
  CCE27934.1 162 RLLRHVSFVDCPGHDILMSTMLSGAAVMDAALLLIAGNEScPQPQTSEHLAAIEIMKLDkIIILQNKVDLMREEAAQQQYESILKF------IRGTVAG 254
                 7789**********************************9989****************99999********888777776666688......7777766 PP

                 TTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 164 gekevpvvfgSalkgegvktllealvellp 193
                 +    pv+++Sa  +++++++ ea+v+ +p
  CCE27934.1 255 K---SPVIPISAQLKFNIDAVNEAIVNTIP 281
                 5...6*********************9987 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.3   2.4e-12   7.2e-09       1      73 [.     313     395 ..     313     396 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 2.4e-12
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEE.......EEEEEEEEEEETEEESEEETTSEEEEEEEESSCCS..GSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskke.......ivtrissletfhededeavaganaGvivaikgled..aiivGdtl 73 
                  G+va+g++  G++k Gde++i++   +  ++       i +r+  l  + +d++ av+g+ +Gv+++i+++ +  + +vG +l
   CCE27934.1 313 GGVAGGSILHGVVKLGDEIEIRPgIVSRDDNgalkctpIFSRVVTLNSEANDLKYAVPGGLIGVGTRIDPTLCraDRLVGFVL 395
                  89*********************87775555***************************************9998877888877 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.5e-06      0.01       2      94 ..      81     207 ..      80     228 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.5e-06
                 EEEEESTTSSHHHHHHHHHTS.TEEESSST..TSSSSEEEEEEEETTEE.......................................EEEEECGGCSS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkp..gtTrdinegrvklkgke.......................................ielvDtpGlie 58 
                 ++ +G+   GKSt+++a++g  +++ +++     T++  +++ k+   +                                       + +vD+pG  +
  CCE27934.1  81 IGTIGHVAHGKSTVVKAISGVqTVRFKNELirNITIKLGYANAKIY--KcdspecprpgcyrsyksekevdppcerdgcsgtyrllrhVSFVDCPG-HD 176
                 889****************965566666661166666655555533..1223567777777778888888888888899999999998********.43 PP

                 HHHHHHHHHHHHHHHHC.TSEEEEEEETTTTCSHHHH CS
    MMR_HSR1  59 gaseekglgkaflalee.adlillvvdaseeklkpld 94 
                        l  ++l+    +d++ll++  +e+  +p+ 
  CCE27934.1 177 ------ILMSTMLSGAAvMDAALLLIAGNESCPQPQT 207
                 ......5777777655546888888864422222332 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.73   2.2e+03       7      35 ..      98     126 ..      93     129 .. 0.81
   2 !   14.9   0.1   6.9e-06     0.021      57     102 ..     221     278 ..     214     281 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.73
  MMR_HSR1_Xtn   7 tstvkltkldeetvkkilkeykihnaevl 35 
                   +s v++ ++++e +++i  + ++ na+++
    CCE27934.1  98 ISGVQTVRFKNELIRNITIKLGYANAKIY 126
                   566677779999*****999999999985 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 6.9e-06
  MMR_HSR1_Xtn  57 pclyvlNKiDlisleeldelare............pnsvviSaekelnldeLkekiwe 102
                   + +++ NK+Dl+++e  ++ ++             + +++iSa+ ++n+d++ e+i +
    CCE27934.1 221 KIIILQNKVDLMREEAAQQQYESilkfirgtvagkSPVIPISAQLKFNIDAVNEAIVN 278
                   578999*****9999999988866789999999977899***************9976 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.14   4.3e+02     105     126 ..      84     105 ..      63     114 .. 0.77
   2 ?   12.0   0.1   4.9e-05      0.15      13      74 ..     186     247 ..     163     282 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.14
                  ECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase 105 vGqSGvGKStLinallpelelk 126
                  +G+   GKSt+++a+ + ++++
   CCE27934.1  84 IGHVAHGKSTVVKAISGVQTVR 105
                  566678*******999876554 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.9e-05
                  EES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-.EEEEEEE-GGG--HHHHHHHHHHHHHH CS
  RsgA_GTPase  13 vaNvdqllivvslkepelslnlldrfLvlaeekgi.epvivlnKiDlleeeeeleelkeelea 74 
                  +a +d +l++++ + +++ + + +  L+++e  ++ +++i+ nK+Dl+ ee + +++++ l+ 
   CCE27934.1 186 AAVMDAALLLIAGN-ESCPQPQTSEHLAAIEIMKLdKIIILQNKVDLMREEAAQQQYESILKF 247
                  78899999999999.677777778899*******945556669********955555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3931.28
//
Query:       CCE27935.1  [L=506]
Description: uncharacterized protein CPUR_01409 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.077   12.2   5.3       0.14   11.3   5.3    1.3  1  Peptidase_M56  BlaR1 peptidase M56
          3    8.0   7.8         18    5.5   1.2    2.6  2  TMEM190        Transmembrane protein 190


Domain annotation for each model (and alignments):
>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   5.3   1.6e-05      0.14       3     140 ..     198     334 ..     196     349 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.6e-05
  Peptidase_M56   3 llkasiaaaiavllvlllrrilrrllsaiaaYalWlivllallipfipesavslpvkfetskinsaaskaplasaaskvlddkas...alatdvkk 95 
                    l +a +++ + vl+ ++ +r   +++ ++++Y+  + +   +l  +++     + + + ++   ++ s+ ++  +a +  +++a+   +    v +
     CCE27935.1 198 LSMACVSLFACVLVFFAYCRGGHKRATKVNSYYSMFAIGWFVLSLLLW-----VITAVIFQHSKNNGSNKDMWGWACAN-NQRAKiyaDKVDYVLV 287
                    66788999999*****************************99999999.....22333333333444444555555443.4555544444444556 PP

  Peptidase_M56  96 vewktilkillliWivgali.lllyliaallvlkkr.fvrklgklra 140
                       ++ + i+++i iv+ +i +lly+i  ++ + kr ++++ +  ++
     CCE27935.1 288 CRLQNWTLICIVIEIVVEVIsILLYTIVFYRFWSKRrLMKSMDMRDR 334
                    67778888889998888777346899999999999977777665544 PP

>> TMEM190  Transmembrane protein 190
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.1    0.0021        19      49      93 ..     220     264 ..     199     284 .. 0.81
   2 ?    5.5   1.2     0.002        18      61      98 ..     292     334 ..     267     352 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0021
     TMEM190  49 hqrldetmrkkhlwalsltcigllllisliclfwwakrrdlyknl 93 
                 h+r  +      ++a+++ +  lll + ++++f  +k  +  k++
  CCE27935.1 220 HKRATKVNSYYSMFAIGWFVLSLLLWVITAVIFQHSKNNGSNKDM 264
                 778888888889*************************99988877 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.002
     TMEM190  61 lwalsltcigll.....llisliclf.wwakrrdlyknlklpar 98 
                  w+l   +i ++     +l+++i+++ +w+krr + k++ +  r
  CCE27935.1 292 NWTLICIVIEIVvevisILLYTIVFYrFWSKRRLM-KSMDMRDR 334
                 56655554444311111445555554489999988.99999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1206  (0.0672653); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 3946.06
//
Query:       CCE27936.1  [L=438]
Description: probable translation initiation factor eIF-4A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-45  154.5   1.3    3.9e-45  153.8   1.3    1.4  1  DEAD             DEAD/DEAH box helicase
    5.9e-32  110.3   0.2    8.7e-31  106.5   0.0    2.6  3  Helicase_C       Helicase conserved C-terminal domain
    1.1e-05   25.4   0.0    1.8e-05   24.8   0.0    1.4  1  ResIII           Type III restriction enzyme, res subunit
    0.00049   19.9   0.2      0.001   18.9   0.2    1.5  1  AAA_30           AAA domain
     0.0011   19.3   0.3     0.0082   16.5   0.1    2.2  2  AAA_19           AAA domain
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.044   13.8   0.0    1.9  2  IL17R_D_N        N-terminus of interleukin 17 receptor D
      0.053   12.9   0.0       0.11   11.9   0.0    1.4  1  CMS1             U3-containing 90S pre-ribosomal complex subu
      0.098   12.4   0.1       0.31   10.8   0.0    1.8  2  fragilysinNterm  N-terminal domain of fragilysin
       0.11   12.5   0.0        0.5   10.3   0.0    2.1  2  Flavi_DEAD       Flavivirus DEAD domain
       0.15   12.3   0.4        0.7   10.2   0.4    2.1  1  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.8   1.3   2.2e-48   3.9e-45       2     175 ..      90     254 ..      89     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 153.8 bits;  conditional E-value: 2.2e-48
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 +iQ++ai  +++g+dv+++a+ G+GKT+ f+i vlq++      ++ +ali++PtreLa+q+ + +  ++++++++++++igg++ rd++++l+ g+++
  CCE27936.1  90 AIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKID--PAVKQCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQV 186
                 79************************************4..799999**********************************************999*** PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 vvgtpgr++d+++++ l+++ ++++VlDEad++l+ gf d+i  i++ lpq+        qv++lSAT+p+dv +
  CCE27936.1 187 VVGTPGRVQDMIQRRILKTDGMKMFVLDEADEMLSRGFTDQIYDIFQLLPQA-------TQVVLLSATMPQDVLE 254
                 *************************************************644.......56*********99865 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.6   4.7e+03      14      51 ..     131     172 ..     122     185 .. 0.58
   2 ?    0.3   0.0      0.48   8.6e+02      32      74 ..     232     271 ..     192     277 .. 0.69
   3 !  106.5   0.0   4.9e-34   8.7e-31       2     111 .]     291     399 ..     290     399 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.6
                 TTTSEEEEEESSHHHHHH....HHHHHHHT.TSTEEEESTTST CS
  Helicase_C  14 eeggkilifvntidrlek....vklllekk.gikvavlhgelp 51 
                 +++ ++li ++t++ +++    v +    + +i++ ++ g ++
  CCE27936.1 131 VKQCQALILAPTRELAQQiqkvV-VAIGDFmNIECHACIGGTS 172
                 56778899999998554332221.2222334566655555555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.48
                 HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESG CS
  Helicase_C  32 vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatd 74 
                 ++ll   ++ +v+ l +++pq + +e+ ++f ++ +++L+  d
  CCE27936.1 232 FQLL--PQATQVVLLSATMPQ-DVLEVTTRFMRDPVRILVKKD 271
                 3444..456777777776666.568899999888888988766 PP

  == domain 3  score: 106.5 bits;  conditional E-value: 4.9e-34
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 kl++l +l+ +++   +++if+nt+++++  ++ l + ++++v ++hg++ q++r+ i+++f++g+s+vLiatd ++rGid+++v+lVin+dlp n ++
  CCE27936.1 291 KLDTLSDLY-ETVTITQAVIFCNTRRKVDWlTDKL-TARDFTVSAMHGDMDQSQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANREN 387
                 667777776.788999************7665555.3458*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 yi+riGR gR+g
  CCE27936.1 388 YIHRIGRGGRFG 399
                 **********86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   9.8e-09   1.8e-05      24     170 ..     102     249 ..      35     250 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 9.8e-09
                 TSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.........GEEEESSS-B--.......-SEEEEEHHHHHH CS
      ResIII  24 dkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke.....igkkvsgdkkkakekdstnkkilvttiqslda 116
                  + ++ ++  GtGKT +  +++ +++  + k+ ++l+l+p+++l +q ++ +  + +  + e      g++v++d k      ++  +++v t  +++ 
  CCE27936.1 102 GHDVIAQAQSGTGKTATFsISVLQKIDPAVKQCQALILAPTRELAQQIQKVVVAIGDFMNIEchaciGGTSVRDDMKAL----QDGPQVVVGTPGRVQD 196
                 456889999********99**********9999****************555444444333333343444455555555....9999************ PP

                 TH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT-....--SEEEEEESS-S CS
      ResIII 117 dseeeeeeseellrdrfdviiiDEaHrlgakkswreilekf....keavllglTATpe 170
                  +     ++  l+ d  ++++ DEa  + +  +  +i + f    ++  ++ l+AT++
  CCE27936.1 197 MI-----QRRILKTDGMKMFVLDEADEMLSRGFTDQIYDIFqllpQATQVVLLSATMP 249
                 *9.....78888899999*******999997666667666544445567778899975 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   5.6e-07     0.001       5     114 ..      91     237 ..      88     247 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.6e-07
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKt..talkalreaweaa.ggrviglAptgkaAkvLae...............elgieastiakllkrlk.... 81 
                  Q++a+  +++++d  +++++  GtGKt  +++++l+++  a  + + ++lApt + A+++++                  i + ++   +k+l+    
  CCE27936.1  91 IQQRAIMPVIKGHD--VIAQAQSGTGKTatFSISVLQKIDPAVkQCQALILAPTRELAQQIQKvvvaigdfmniechaC--IGGTSVRDDMKALQdgpq 185
                 59999999999998..99*********82256788899999987799***************64443333333322211..222222222222225668 PP

      AAA_30  82 ...............grarlepgtllivDEagmv....dtkqlaallkaaek 114
                                +  + +  ++++ DEa  +     t+q+ ++++ + +
  CCE27936.1 186 vvvgtpgrvqdmiqrRILKTDGMKMFVLDEADEMlsrgFTDQIYDIFQLLPQ 237
                 8888888888888653334444488999998644344445556666666665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   4.6e-06    0.0082       1      65 [.      92     156 ..      92     254 .. 0.71
   2 ?    0.3   0.0      0.43   7.7e+02      40      82 ..     302     342 ..     285     380 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.6e-06
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaal 65 
                 q++a+   +k + ++  a  GtGKT +    v   ++   vk  + l++a+t+  a+++++ + a+
  CCE27936.1  92 QQRAIMpVIKGHDVIAQAQSGTGKTATFSISVLQKIDPA-VKQCQALILAPTRELAQQIQKVVVAI 156
                 7888877999999999***********988777777766.667999*************9988443 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.43
      AAA_19  40 vkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfdd 82 
                 v   + ++ + t+r ++ l+++l+a +   + +H+   +d  +
  CCE27936.1 302 VTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGD--MDQSQ 342
                 556788999999999999999997766667777755..43333 PP

>> IL17R_D_N  N-terminus of interleukin 17 receptor D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       6.4   1.2e+04      81      97 ..      48      64 ..      39      75 .. 0.77
   2 ?   13.8   0.0   2.4e-05     0.044      67     107 ..     123     163 ..     108     167 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 6.4
   IL17R_D_N 81 lvlkdPkqlnfsfkevk 97
                lvl   +q++ ++ e++
  CCE27936.1 48 LVLAHIRQIESNYDETV 64
                78888999999998875 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.4e-05
   IL17R_D_N  67 ileelksegkqcqqlvlkdPkqlnfsfkevklesqpflnlk 107
                 +l+++++  kqcq l+l   ++l  + ++v++    f+n++
  CCE27936.1 123 VLQKIDPAVKQCQALILAPTRELAQQIQKVVVAIGDFMNIE 163
                 689999********************************986 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     6e-05      0.11     180     209 ..     186     215 ..     173     225 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6e-05
        CMS1 180 iavGtpgRildLleeeslsvdeLkrivlDa 209
                 + vGtpgR+ d+++   l+ d +k  vlD 
  CCE27936.1 186 VVVGTPGRVQDMIQRRILKTDGMKMFVLDE 215
                 789*************************96 PP

>> fragilysinNterm  N-terminal domain of fragilysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       6.1   1.1e+04      85     105 ..     264     284 ..     256     288 .. 0.72
   2 ?   10.8   0.0   0.00017      0.31      77     106 ..     397     426 ..     395     435 .. 0.92

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 6.1
  fragilysinNterm  85 idyivykekermaeiaeyyaa 105
                      +  +v k++  ++ i ++y a
       CCE27936.1 264 VRILVKKDELTLEGIKQFYIA 284
                      556788888888999999976 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00017
  fragilysinNterm  77 rlqrnGelidyivykekermaeiaeyyaah 106
                      r+ r G  i++++  + ++m ei ++y+++
       CCE27936.1 397 RFGRKGVAINFVTAEDVRMMREIEQFYSTQ 426
                      899************************976 PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00028       0.5       7      52 ..     105     152 ..      99     183 .. 0.82
   2 ?   -1.1   0.0      0.92   1.6e+03      95     137 ..     207     249 ..     185     255 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00028
                 EEEE--TTS-TTTTHHHHHHHHH..HHTT--EEEEESSHHHHHHHHHH CS
  Flavi_DEAD   7 tvldlhPGaGktrkvlpelvkea..ierrlrtlvLaPtrvvlaemeea 52 
                  + ++  G+Gkt  +  +++++   + ++ ++l+LaPtr  ++ +++ 
  CCE27936.1 105 VIAQAQSGTGKTATFSISVLQKIdpAVKQCQALILAPTRELAQQIQKV 152
                 5667889******999988887522568899********999988775 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.92
                 --SEEEEETTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-T CS
  Flavi_DEAD  95 nyeliimDeahflDPasiaarGyletkaeegeaalilltatPP 137
                  ++++++Dea  +       + y   +   + ++++ll+at P
  CCE27936.1 207 GMKMFVLDEADEMLSRGFTDQIYDIFQLLPQATQVVLLSATMP 249
                 5667777777544333333333322333345677888888877 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.4   0.00039       0.7      13     126 ..     110     244 ..     105     255 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00039
      AAA_22  13 esGtGKTtllrrlleqldeeakaee................erpevvfvtlpsstsskdllrellralglelka....................erlss 75 
                 +sGtGKT +    + q+ ++++ ++                +                ++  ++  +++ e++a                      ++ 
  CCE27936.1 110 QSGTGKTATFSISVLQK-IDPAVKQcqalilaptrelaqqiQ----------------KVVVAIGDFMNIECHAciggtsvrddmkalqdgpqvVVGTP 191
                 67777777776666664.333333344444444444444331................22222222222222223333333333333333333312334 PP

      AAA_22  76 eellealeqalraravielliiDEaqh.lrseealeeLrsllnl..srkgvqli 126
                  ++ +++++ + +++  +++++DEa+  l s     ++ +++ l  + ++v l+
  CCE27936.1 192 GRVQDMIQRRILKTDGMKMFVLDEADEmL-SRGFTDQIYDIFQLlpQATQVVLL 244
                 444455555555555459*********77.877777777777764444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3410.34
//
Query:       CCE27937.1  [L=505]
Description: uncharacterized protein CPUR_01411 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-20   74.6   0.2    4.9e-19   69.0   0.2    2.2  1  Cupin_8     Cupin-like domain
    2.2e-10   41.0   0.1    6.7e-10   39.4   0.1    1.8  1  JmjC        JmjC domain, hydroxylase
    2.1e-07   30.7   0.1    3.9e-07   29.8   0.1    1.5  1  F-box-like  F-box-like
    5.1e-07   29.4   0.0    1.1e-06   28.4   0.0    1.6  1  F-box       F-box domain
    0.00033   20.4   0.3        1.3    8.9   0.2    2.7  2  FAM212      FAM212 family
  ------ inclusion threshold ------
       0.07   13.7   0.0       0.18   12.4   0.0    1.7  1  Elongin_A   RNA polymerase II transcription factor SIII (Elon
      0.074   12.5   0.0       0.14   11.6   0.0    1.4  1  Cupin_4     Cupin superfamily protein


Domain annotation for each model (and alignments):
>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.2   1.9e-22   4.9e-19      12     245 ..     195     407 ..     187     412 .. 0.82

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 1.9e-22
     Cupin_8  12 skPviikgalkdwpalqkwtddeylleylkekaedvkvsvektpdgeadsfkeneelkfvkpeeeemtfkdfldelearrdtrsepyaylqnanlasef 110
                 +kP++++ +++dwp ++kwt     +e+l ++ ++v+++ e                      ++  t++ + ++++++r   +e+ +yl   ++a+++
  CCE27937.1 195 EKPFVLTKCIQDWPVMSKWT-----IEKLLDAFRSVEFRAE----------------------AVDWTMERYCEYMKDNR---DESPLYLFDRKFAEKM 263
                 79*****************9.....6************962......................34468899999999986...5568888888888877 PP

     Cupin_8 111 pel..kedsdlpfateafgkkpeavn.........lWlGnsasvsslHkDh..yeNlycvvrGrKkftLfpPs.dapflyeaslsptedgtvvssvdve 195
                 +    +ed  + +++ +fg+   +v          l +G+++s s +HkD+     + +v++G K +++fpP+ ++p +y++++    +++v+s+++++
  CCE27937.1 264 NIRvgHEDGATYWRPDCFGPDLFEVLgderpahrwLIIGPERSGSTFHKDPngTSAWNAVIQGSKYWIMFPPNaQVPGVYVSED----SSEVTSPLSIA 358
                 7551246688889998886543333334444444499**************999******************63799*****95....5689******* PP

     Cupin_8 196 epdlekfprlkdakkalevtlnaGevLylPalWfHeVkslaeeplhlavn 245
                 e  l   +++++   ++e   +aGe+L++P++W+H V +l e+++ l+ n
  CCE27937.1 359 EWLLTFHEEARELPDCIEGICHAGEILHVPSGWWHLVVNL-ESGIALTQN 407
                 **99999999999999**********************99.666444444 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.1   2.6e-13   6.7e-10       1     114 []     298     408 ..     298     408 .. 0.84

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 2.6e-13
                 EEEEE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHHHHHHHHHHCCSTTGCCTTTCEE-HHH.HHHTT---EEEEE-TT-EEEE-TT-E CS
        JmjC   1 wlylgmpksttpwhiedqglySinylhfgapkvWyiipeekkeklekvlskknskeqpdllrhkstlispkq.lekegipvyrfvqkpgefVfvfpgay 98 
                 wl +g+++s   +h + +g++ +++  ++++k+W ++p++++     v ++++    p  + ++   ++ +         +++   ++ge++ v++g++
  CCE27937.1 298 WLIIGPERSGSTFHKDPNGTS-AWNAVIQGSKYWIMFPPNAQVPGVYVSEDSSEVTSPLSIAEWLLTFHEEArELP---DCIEGICHAGEILHVPSGWW 392
                 899*****************9.9*****************999988888887544555555555555555542334...69999*************** PP

                 EEEEESSSEEEEEEEE CS
        JmjC  99 Hsvfnlgfniaeavnf 114
                 H v+nl + ia ++nf
  CCE27937.1 393 HLVVNLESGIALTQNF 408
                 ***************9 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.1   1.5e-10   3.9e-07       2      47 ..      69     113 ..      68     114 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.5e-10
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlvl 47 
                   LPdE  + ++++++ ++Ll+l  +C+  + +++++ +LW+ l+l
  CCE27937.1  69 GALPDEMVMLVLEQMDVRSLLSLGSTCKFLYAFCHSD-ELWKALFL 113
                 57**********************************9.****9986 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   4.2e-10   1.1e-06       2      44 ..      67     109 ..      66     113 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 4.2e-10
                 HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH CS
       F-box   2 tlsrLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwc 44 
                 t+  LP+e ++ +Le+++ ++ll+l +++k ++ ++ sd+lw+
  CCE27937.1  67 TWGALPDEMVMLVLEQMDVRSLLSLGSTCKFLYAFCHSDELWK 109
                 5777**************************************7 PP

>> FAM212  FAM212 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.2   0.00049       1.3      25      51 ..     128     154 ..     115     156 .. 0.88
   2 !    8.6   0.0   0.00061       1.6       5      49 ..     213     261 ..     209     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00049
      FAM212  25 DWTssLlSrsRnRQPLVLGDNvFADLv 51 
                  W s+Ll  s+  Q  V   NvF D +
  CCE27937.1 128 SWRSTLLAISKTQQAVVDCGNVFSDVL 154
                 6************************76 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00061
      FAM212   5 stsdasleqarsveeeadseDWTs....sLlSrsRnRQPLVLGDNvFAD 49 
                  t ++ l+  rsve +a++ DWT       +   R+  PL L D  FA+
  CCE27937.1 213 WTIEKLLDAFRSVEFRAEAVDWTMerycEYMKDNRDESPLYLFDRKFAE 261
                 56677899999************7333258999************9996 PP

>> Elongin_A  RNA polymerase II transcription factor SIII (Elongin) subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.9e-05      0.18       5      77 ..      69     139 ..      66     145 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.9e-05
   Elongin_A   5 GdvpyellrpiLekctpeqLreiEensphla..eetdelWkklikrdfpeeskekstepkepkswrelYeklkke 77 
                 G +p e++  +Le++ ++ L ++ + ++ l    ++delWk l      e+s+  +++     swr+   ++ k 
  CCE27937.1  69 GALPDEMVMLVLEQMDVRSLLSLGSTCKFLYafCHSDELWKALFLLLSTESSRSLKWR----GSWRSTLLAISKT 139
                 889***************************97778*******9987777777766665....5777766655555 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.3e-05      0.14     176     233 ..     375     440 ..     363     481 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.3e-05
                 EEEEE-TT-EEEE-TT-EEEEEBBT-CCEEEEEECCEE.HCCHHHCHHHHHHHHHHHH.......H CS
     Cupin_4 176 edfvLepGDlLYlPrgviHqgvaedesltlSvglrapt.aaellesvldllldklpei.......d 233
                 ++ +  +G +L +P+g++H  v ++ ++ l+  + ++t   +ll++vl ++ dk+ ++       +
  CCE27937.1 375 IEGICHAGEILHVPSGWWHLVVNLESGIALTQNFVPQTpGLNLLSEVLLFMRDKADQVsgfdcniE 440
                 5778899**************************665542789999999999998887755544442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3997.14
//
Query:       CCE27938.1  [L=708]
Description: related to tol protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-17   63.9   7.8    5.5e-17   62.5   1.7    2.9  2  HET          Heterokaryon incompatibility protein (HET)
  ------ inclusion threshold ------
        6.3    7.5  42.0        0.1   13.2  34.6    1.9  2  PRP38_assoc  Pre-mRNA-splicing factor 38-associated hydrophil
          8    4.6   6.4         12    4.1   6.4    1.2  1  CDC45        CDC45-like protein


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.5      0.94   5.6e+03     125     125 ..      46      46 ..      14      96 .. 0.51
   2 !   62.5   1.7   9.2e-21   5.5e-17       1     146 []     161     301 ..     161     301 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.94
         HET 125 e 125
                 +
  CCE27938.1  46 R 46 
                 1 PP

  == domain 2  score: 62.5 bits;  conditional E-value: 9.2e-21
         HET   1 YeaLSYvWgdsk...............ekeeievng...klleltenledalqvlrklgerylWiDaiCInQdddkekskqvqlmadIYsnAelvival 81 
                 Y++LSYvWg+++               +   i+  +    + ++++++ da+  ++klg+r lW+D++CI  dd+k++ ++v++ma +  nA++ i+a+
  CCE27938.1 161 YATLSYVWGSADprhsspegqaqllksN---IDAYQltiPEKDIPQTILDAIWLTKKLGIRHLWVDRLCIVHDDEKDRMEHVEHMAYVMCNAYMAIIAA 256
                 9**********99999998877765542...222224448999*******************************************************9 PP

         HET  82 gsesedsgllalealralkkekleekeielkksaekkkellekeeraieellespwfkRvWvlQE 146
                  ++ ++   l l+ +r  +  k+   ++                    e l++s+w++R+W+lQE
  CCE27938.1 257 YGDVNTG-ILPLDPRRPIRTPKQGP-RE------------------HGELLQTSKWNSRAWTLQE 301
                 9999655.66666555544444444.22..................2345778899999999998 PP

>> PRP38_assoc  Pre-mRNA-splicing factor 38-associated hydrophilic C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  34.6   1.7e-05       0.1      31      96 ..       5      63 ..       1      69 [. 0.55
   2 ?   -3.5   0.7       2.8   1.7e+04      32      45 ..      87     100 ..      81     108 .. 0.39

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
  PRP38_assoc 31 aslsrkrrsrsrrrsstrarsrsrersrerdrrsrstrdrdrardRdrrrskeerrrsrdrsrsrd 96
                  +ls+  +s+s+ r++ r+r r r+r+r++dr+++++rd +r r+R+r+     + r+rdr+ +rd
   CCE27938.1  5 SDLST--PSPSPPRERERDRTRNRTRERHQDRDRDRDRDVGRTRERQRD-----HARDRDRETDRD 63
                 34444..555555555555555555555555555444777777777776.....556666555555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.8
  PRP38_assoc  32 slsrkrrsrsrrrs 45 
                  + s + ++r+ ++s
   CCE27938.1  87 DTSASVQRRASTSS 100
                  22222222222222 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   6.4     0.002        12     162     208 ..      21      69 ..       2     144 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.002
       CDC45 162 edeeeskkkrksksdeeeesddddersrkrrrsepsakklrrq..lkke 208
                 +++++++++r++++d+++++d  ++r+r+r++ ++++++++r   l+++
  CCE27938.1  21 DRTRNRTRERHQDRDRDRDRDVGRTRERQRDHARDRDRETDRDsnLRSK 69 
                 1111112222222222222111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4919.95
//
Query:       CCE27939.1  [L=716]
Description: probable catalase-3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.3e-165  549.5   0.2   5.3e-165  549.2   0.2    1.1  1  Catalase      Catalase
    1.7e-47  160.8   1.9    2.9e-47  160.1   1.9    1.4  1  Catalase_C    C-terminal domain found in long catalases
    7.5e-17   61.3   0.0    1.5e-16   60.3   0.0    1.6  1  Catalase-rel  Catalase-related immune-responsive


Domain annotation for each model (and alignments):
>> Catalase  Catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  549.2   0.2    9e-169  5.3e-165       2     382 ..      58     441 ..      57     442 .. 0.97

  Alignments for each domain:
  == domain 1  score: 549.2 bits;  conditional E-value: 9e-169
                 -TTS-B-S-SSS-EEESTTS-BBTT-HHHHHHHHHHHT------SS--SEEEEEEEEEESS--TTT---GGGSSTT-EEEEEEEEE-SS--TT--SSSS CS
    Catalase   2 tseGapvsdnqnsltagerGplllqdvhlieklahfdreripeRvvhAkGagahgeFevtkdisdltkakllskvgkktpvlvRfStvagekgsadtaR 100
                 ++ G p+ ++qnsl+ag+rGp+ll+d+++++k++hfd+er+peR vhA+G+gahg+F+ + d+s++t+a++l +++kktpv+vRfStvag++gsadtaR
  CCE27939.1  58 SDVGGPI-EDQNSLKAGDRGPTLLEDFIFRQKITHFDHERVPERAVHARGTGAHGTFTSYGDYSNITAASFLGQKDKKTPVFVRFSTVAGSRGSADTAR 155
                 5667788.5799*************************************************************************************** PP

                 S--EEEEEEEETTEEEEEEEESSSS-S-S-GGGHHHHHHHHSB-TTT-SB..-HHH....HHHHHHT-GGGHHHHHHHHSGGGSBS-GGGS-EE--S-E CS
    Catalase 101 dvrGfavkfyTeeGnwDlvgnntpvFfirDpikfpdlihsqkrepqtnlk..daam....fwdflslnpeslhqvlilfsdrgipksyrhmngygvhtf 193
                 dv+Gfav++yT+eGn+D+vgnn+pvFfi+D+i+fpdlihs+k++ +++++  +  +    +wdf+s+++ +lh+++++++ +gip+s+rhm+g+gvht+
  CCE27939.1 156 DVHGFAVRLYTDEGNFDIVGNNVPVFFIQDAIQFPDLIHSVKPRQDNEIPqaA--TahdsAWDFFSQQTSTLHTLFWAMAGYGIPRSLRHMDGFGVHTY 252
                 **************************************************652..32367*************************************** PP

                 EEE-TT--EEEEEEEEEETT---B--HHHHHHHHHH-TTHHHHHHHHHHHTT---EEEEEEEEEEHHHHTTTHHHHT-TT----TTTS--EEEEEEEEE CS
    Catalase 194 klvnkegevvyvkfhfktkqgvknltaeeaeklagedpdyatrdLyeaiekgeypewelyvqvmteeeaeklrfnilDlTkvwpekevplrevGkltLn 292
                 +lv+++g+++ vk+h+k+kqg ++l+++ea++ ag+++dy+++dL++ai++g+ypewel++q+++e++a  + f++lD+Tk++pe+  pl++vG + L+
  CCE27939.1 253 RLVTDDGTSKLVKWHWKSKQGKASLVWDEAQRAAGKNADYHRQDLFDAIQSGNYPEWELNLQIINEDQALAFGFDVLDPTKIIPEEYAPLMPVGVMRLD 351
                 *************************************************************************************************** PP

                 E--S-HHHHTTT----TT---TTEE--S-HHHHHHHHHHHHHHHHHT.-TTGGGSGGG---..---S----TT-.....S-S---SS-S-T CS
    Catalase 293 rnpenyFaevEqvafspsnlvpGiepseDklLqgRlfsYadtqryRl.GvnyqqlpvNrpkakvanyqrdGamrveankgkepnYepnsle 382
                  np+nyFae+Eqv+f+p+++v+G++++eD+lLqgR+fsY dtq++R  G+n++qlp+Nrp ++++n++rdGa +  ++k++ + Y+pn+l+
  CCE27939.1 352 ANPSNYFAETEQVMFQPGHIVRGVDFTEDPLLQGRIFSYLDTQINRHgGPNFEQLPINRPVVPIHNNNRDGAGQNFIHKNN-APYTPNTLN 441
                 ***********************************************99****************999******8888877.99***9976 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1   1.9   4.8e-51   2.9e-47       2     152 .]     568     712 ..     567     712 .. 0.98

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 4.8e-51
  Catalase_C   2 glkVgiLasndseaslaqakalaaalaaegvdvtvvaeklgsaegvnrTYstadaveFDaivvadgaeslfsakataasslfpagrplqllldayrhgK 100
                 +l Vg+Las++s++slaqa+al++a++ ++v+v vvae+l  a+gv++TY +adav FD+ivvadg+e+lf+  +t++sslf+ grp+q+++d y++gK
  CCE27939.1 568 TLIVGVLASTASKNSLAQAQALKDAFKTSKVNVIVVAESL--ATGVDQTYDAADAVSFDGIVVADGVEALFD--NTKKSSLFQPGRPSQIVNDGYNWGK 662
                 899*************************************..*****************************8..68*********************** PP

  Catalase_C 101 pigalGsgaealkaagisaeepGVyvadsasealvekvkegLatfrfldRfp 152
                 p+g+lGs+++a+ka ++  e+ GVy+ +s+ + lv ++++gLa f+f+dRfp
  CCE27939.1 663 PMGFLGSAKRAVKATSVV-EGAGVYMRNSTAT-LVGDFQKGLAKFKFTDRFP 712
                 ***************997.6*********998.******************8 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   2.6e-20   1.5e-16       2      65 .]     474     536 ..     473     536 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 2.6e-20
                   HGG--SSHHHHHHHHHS-HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-HHHHHHHHHHH CS
  Catalase-rel   2 edfddhfsQagllyrsmseeekerlvnniafelskvedeeiqerqlehfakvDpdlgqrVaeal 65 
                   ++f dh++Q++l+++s ++ e++ l+n+i+fe s+ + + +q+++l++++k+++d + rV +al
    CCE27939.1 474 NTFLDHWTQPRLFFNSITPIEQQFLINAIRFETSHLS-QVVQKNVLAQLNKISHDVAVRVGKAL 536
                   5788********************************9.**********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5122.00
//
Query:       CCE27940.1  [L=125]
Description: probable peptidyl-prolyl cis-trans isomerase nima-interacting 4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-17   63.0   0.1    6.8e-17   62.1   0.1    1.5  1  Rotamase_3  PPIC-type PPIASE domain
    2.8e-15   57.1   0.1    5.3e-15   56.2   0.0    1.4  1  Rotamase    PPIC-type PPIASE domain
    9.4e-05   23.2   1.2    0.00012   22.9   0.1    1.6  2  Rotamase_2  PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.1   1.1e-20   6.8e-17      10     115 ..      28     124 ..      18     125 .] 0.84

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 1.1e-20
  Rotamase_3  10 ksakdsvkvshIlistkgkesrseeeakakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskv....vktd 104
                  + ++s++v+hIl +             ak ++ la+l++g +F ++A++yS+D+a   +GG lgw tkg ++ +Fed++f l+  ++s++     kt+
  CCE27940.1  28 SKGAQSINVRHILCEK-----------HAKKEEALAKLRDGVKFDEVARTYSEDKA--RQGGALGWKTKGSLDAKFEDVAFGLEPSTTSSPkigeAKTE 113
                 3455699999999964...........5667788999******************7..9***********************98877765544448*** PP

  Rotamase_3 105 fGyHiikvtdk 115
                 fGyHii v  +
  CCE27940.1 114 FGYHIIMVEGR 124
                 ******99765 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   8.8e-19   5.3e-15      20      96 ..      45     122 ..      38     123 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 8.8e-19
                 HHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-E....EETTEEEEEEEE CS
    Rotamase  20 akaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepv....etkfGfhiikle 96 
                 ak ee l++l+ g + F+e+Ar yS+d  +a++gG+lgw +kg l+++fe++af+l++   s p     +t+fG+hii++e
  CCE27940.1  45 AKKEEALAKLRDGVK-FDEVARTYSED--KARQGGALGWKTKGSLDAKFEDVAFGLEPSTTSSPKigeaKTEFGYHIIMVE 122
                 5668999******99.*********54..57*******************************9988999*********986 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.46   2.7e+03      41      56 ..      12      24 ..       3      39 .. 0.45
   2 !   22.9   0.1     2e-08   0.00012      34     109 ..      45     125 .]      30     125 .] 0.76

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.46
  Rotamase_2 41 alakagaekdfaalak 56
                 +ak++   ++++ a 
  CCE27940.1 12 SAAKGK---TAEKDAG 24
                222322...2333333 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 2e-08
  Rotamase_2  34 vaaeaalalakagaekdfaalakgnskkaadlg....ifesasnlpeelakaafalkpgevsgpv....etdngyyivkvtevk 109
                 +++e ala+++ g   +f+++a+ +s+++a +g    ++++ s l++++++ af l+p ++s p     +t++gy+i+ v+++k
  CCE27940.1  45 AKKEEALAKLRDGV--KFDEVARTYSEDKARQGgalgWKTKGS-LDAKFEDVAFGLEPSTTSSPKigeaKTEFGYHIIMVEGRK 125
                 34455555555554..777777777777666666666999888.********************55666*********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 909.69
//
Query:       CCE27941.1  [L=147]
Description: probable 40S ribosomal protein S12 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-27   95.5   0.7    1.5e-27   95.2   0.7    1.1  1  Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 famil
  ------ inclusion threshold ------
      0.085   12.8   0.0       0.15   12.0   0.0    1.3  1  PELOTA_1        PELOTA RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.7   1.7e-31   1.5e-27       1      94 [.      31     125 ..      31     126 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 1.7e-31
                     HHHHHHHHHHHHHTEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHHHTTEEEEEESCHHHHHHHTTSSSE.CSEEEEEESTTTHHH CS
  Ribosomal_L7Ae   1 daieevlkkakkagklvlGlkevtkalergeaklvilAedvepeekkkllealckekevpyvkvkskkeLGelvgkkrp.vsalaikdegdskdl 94 
                     da+++vlk+++ +++l++Gl+e+ kal+r++a++++l e++e+e +kkl+ alc e+++p++kv++ k+LGe++g+++  ++++a+k++++s+++
      CCE27941.1  31 DALKGVLKLSLMHDGLARGLREASKALDRRQAHMCVLNENCEEEPYKKLVAALCDEHKIPLIKVQDGKQLGEWAGLCVLdREGNARKVVNCSCVV 125
                     58999***************************************************************************************987 PP

>> PELOTA_1  PELOTA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.7e-05      0.15      25      70 ..      49      96 ..      46     100 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.7e-05
    PELOTA_1 25 gigEaTRvlLRRvPekvlvrd..eeepdlahlllLakekgvpveevpd 70
                g  Ea ++l RR+ +  ++++  eeep  +++ +L++e+++p+ +v+d
  CCE27941.1 49 GLREASKALDRRQAHMCVLNEncEEEPYKKLVAALCDEHKIPLIKVQD 96
                6679**********998888844556889999**********988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1138.22
//
Query:       CCE27942.1  [L=130]
Description: probable ribosomal protein S15a.e.c10, cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-22   78.1   0.1    7.2e-22   77.7   0.1    1.2  1  Ribosomal_S8  Ribosomal protein S8


Domain annotation for each model (and alignments):
>> Ribosomal_S8  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.1     4e-26   7.2e-22       3     127 .]       7     130 .]       5     130 .] 0.88

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 4e-26
                   HHHHHHHHHHHHHTT-SEEEE.E--HHHHHHHHHHHHCTSEEEEEEE.CCCCCCEEEEE-BSSS-SBSSSEEEE-SBTTC--EE-CCC---CGGGTS CS
  Ribosomal_S8   3 iadmltrirNaekakkeevev.pasklkeeilkvLkeeGyikdfeve.eekkkkikielkynkkkksvikklkrvskpgrrvYakvkelpkvlnglG 97 
                   + d+l++i+Naek +k++v + p+sk++ + l+v++++Gyi +fe + ++++ ki ++l+ + +k++vi+   +v  + ++ ++ vk lp   + +G
    CCE27942.1   7 LHDALNSINNAEKSGKRQVMIrPSSKVIVKFLQVMQRHGYIGEFEEVdDHRSGKIVVQLNGRLNKTGVISPRYNVRLADLEKWV-VKLLP--ARQFG 100
                   789*******************************************86666677777776666679****99999999999554.45555..4679* PP

                   EEEEEETTEEEEHHHHHHCT--EEEEEEEE CS
  Ribosomal_S8  98 iaivsTskGvmtdkeArkkkvGGevlayvw 127
                    +i++Ts+G+m ++eAr+k+v G+++ + +
    CCE27942.1 101 YVILTTSAGIMDHEEARRKHVAGKIIGFFY 130
                   **************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1027.70
//
Query:       CCE27943.1  [L=628]
Description: related to capsular associated protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-12   46.0  11.1      5e-08   32.3   7.7    3.7  2  Glyco_transf_90  Glycosyl transferase family 90
  ------ inclusion threshold ------
      0.033   13.8   0.4      0.069   12.8   0.4    1.5  1  DUF4653          Domain of unknown function (DUF4653)


Domain annotation for each model (and alignments):
>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1   0.00011      0.95      71      95 ..     202     226 ..     193     246 .. 0.82
   2 !   32.3   7.7   5.6e-12     5e-08     105     317 ..     356     627 ..     345     628 .] 0.81

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00011
  Glyco_transf_90  71 LlrkypgklpDlelmfncdDrPvvk 95 
                      +l+++   lpD++l fn++D P v 
       CCE27943.1 202 MLQSFLQYLPDMDLAFNMHDEPRVV 226
                      45556666**************874 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 5.6e-12
  Glyco_transf_90 105 appPlfsycgdeetlDivfPdwsfwgwpevnikrwslllkelkegnkkvkweerepyaywkGnpsvaetReeLlkcnrskkelvdarltkq... 195
                      +  P+fs ++ ++++Di++P   +w              k   e ++ v+w e+ +  yw+G+ +   +R+   + +++++   +         
       CCE27943.1 356 DLFPIFSQSKISSYNDIIYPSPWYW------------YNKVQYEPEHDVPWDEKASALYWRGSTTGGFSRNGGWRRQHRQHFVKKI--NDAgrr 435
                      5679999999999999999965444............3333346677889999999999999988766666555544443211111..111112 PP

  Glyco_transf_90 196 ......................................................................dekkeskegvkessledqckhkYk 219
                                                                                            d++++  + + +++ ++  ++kY 
       CCE27943.1 436 akimmpfneqqkpqeekakakgeedeeevnisshqespptwaaaevpradyisltdvafshigqcdpgdcDAQRAFFNVTDHVNQTQAWHYKYL 529
                      23445577889999******************************************************9999999999999************* PP

  Glyco_transf_90 220 iyieGvaasvsekyilacdslvllvkpeyydffsreLkplehYvPikskdklrdlkeavdwgnahd...ekaqeiaeegseFireeLkmddvyd 310
                      + ++G a s ++   l   sl+++  + + ++  + L+p++hYvP++   + +d  e v++ n+ +     a  +a+e++e++ + ++ +d+  
       CCE27943.1 530 LDMDGNAFSGRFLAFLQSMSLTFKF-ALFREWHNEWLAPWVHYVPLSL--QGDDWLETVRFFNESSlgaGDAVVMAQESREWAGKAMRKEDMEA 620
                      ********99999999999999987.579******************9..889999*****99986222567889******************* PP

  Glyco_transf_90 311 YmfhLlt 317
                      ++f+Ll 
       CCE27943.1 621 WFFRLLL 627
                      ****995 PP

>> DUF4653  Domain of unknown function (DUF4653)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   7.7e-06     0.069     124     206 ..      35     115 ..      23     149 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.7e-06
     DUF4653 124 vaveaekavgsPlednGy.assslsvdspdssPePacttprdPssdsdsllptvaqavqqlqakerykeqekekhhvhlvmyrr 206
                  +++++ av  Pl  +   as sl  +++  + +   ++++ P ++++++   ++ a ++l++k+r   q k+  h+ +  yrr
  CCE27943.1  35 KQTGQARAVQKPLRQTSLtASHSLDAETTTGTAQSGPQPKKAPDPEQHPIRHLLSSAKRELRDKQRR--QSKDL-HAAVQEYRR 115
                 456788899999998875378899999999888888889999*******************999885..55554.566777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       917  (0.0511462); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 4348.54
//
Query:       CCE27944.1  [L=511]
Description: related to DNA-directed RNA polymerase II regulator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.6e-109  364.9   1.6   6.8e-109  364.7   1.6    1.1  1  Paf1      Paf1


Domain annotation for each model (and alignments):
>> Paf1  Paf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.7   1.6  3.8e-113  6.8e-109       1     412 [.      16     478 ..      16     501 .. 0.90

  Alignments for each domain:
  == domain 1  score: 364.7 bits;  conditional E-value: 3.8e-113
        Paf1   1 dliarirYsNnLPdppfdpKflkypfep...erfveyk.sssLerelkheiltdadlGmpldLinidgyldgdeesn....epvkLdpkDrkLLedeea 91 
                 d+iarir+sN+LP+pp++pK+l++p++    +++++++ +s+L+re++++i++da+lGmpldL++++g++dgde+s+    ++++++p+Dr LL++   
  CCE27944.1  16 DFIARIRFSNALPPPPNPPKLLDIPNTGlasGQYTTPGfASRLAREQPLNIEADAELGMPLDLVGMPGVFDGDERSIqapvQTPAVHPHDRPLLRPI-- 112
                 8**************************9999******************************************9999********************.. PP

        Paf1  92 skasskrskqhskkVswLRrTEYistefnrfgvsatdkqetklgknlkkkeqeedlyrdresqika.iektFedakkplkdl...kHpskknlkaVeal 186
                   a+ +++k+++++Vs+LRrTEYis++++++     +++++ l k++++  +  d+++d++  ik+ i+++Fe+a++++kd+   kHp+kk+lk+Vea+
  CCE27944.1 113 --AALGKPKVAEANVSFLRRTEYISSTTPKRLDA--SHPRALLPKARRPLRTAPDAAADSPLAIKRkIDRSFETAEQDIKDVkrvKHPTKKHLKVVEAI 207
                 ..9************************9999954..8********************************************9***************** PP

        Paf1 187 pllPDfelwknp..yaqvkfdgdpatdskekdlkeeeqkerlsqaiirpv.meeege.....................efv..ayflpteetlekrkr. 258
                 p+lPD+e+++++  y+++kf+++p+++++e+d       +rl ++++rp+ ++e++e                     +++  +++l++++t ++++r 
  CCE27944.1 208 PMLPDLEAFPDSgaYVTIKFLTNPVSSANEYD-------TRLLSGLFRPIeRTEAEEaayeaaleaheqdpennpsphNLMnyDFYLGQSSTVARNFRr 299
                 ***********999*****************9.......9**********9999999*********************8887799************** PP

        Paf1 259 ............dleeeideeedeeyefklaReYnwkvenkas..kgyee.nlllvfrdd...kkkavyYneletrveLrkrRkk.........eeees 330
                             dl++++ e+ + +++f+++R+Y+++ e++ +  ++y + +++++++ d   ++ka+yY+++++++++r++R+k         ++ee+
  CCE27944.1 300 kfdiedadrdntDLYTHQGET-GPYFQFNRVRAYETADERELDhpTKYSDeIIVAYNDVDaypRQKAMYYYPIMQKSTIRPQRTKniartiginADEEQ 397
                 **********99999999999.89**************9988888999886888888888899******************************97778* PP

        Paf1 331 kkdklvvklrelneeelkarekresefdpleeekeeeeeeeeeeeee...kseeeeekeeekeeaeeeseaeseeessdeeeeea 412
                 ++d+l++++++++ee+l+a++k+++++ ++e+e +ee+    +++e+      + + + + + + e++++ae++++++ e   +a
  CCE27944.1 398 MVDQLDITVEDPTEEMLDAMKKYKNHPLGWEQEPDEEDIAAGATQEQgpdA--DGDADADVEVDGEADADAEAGADADPEP--DA 478
                 ***************************************999999995431..2222222222222222222222222222..22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3419.23
//
Query:       CCE27945.1  [L=190]
Description: probable RER1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-78  259.8  11.4    1.1e-77  259.6  11.4    1.0  1  Rer1      Rer1 family
  ------ inclusion threshold ------
      0.046   13.4   5.9      0.061   13.0   0.1    2.1  2  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> Rer1  Rer1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.6  11.4   1.2e-81   1.1e-77       3     170 ..      18     185 ..      16     186 .. 0.95

  Alignments for each domain:
  == domain 1  score: 259.6 bits;  conditional E-value: 1.2e-81
        Rer1   3 lkklkrkyqklldkltpytleRWiatlvllllfllriillqgfyivaYalgiylLnlllafltPkfdpsleeeaaeeeaeega..elptkkdeefrPfi 99 
                 ++ l+rkyq+lld++tp++l+RW++t v lllf+lri++lqg+yivaYalgiylLnl+lafl+Pkfdps +    ++e+e+g+  +lptk+deef+Pfi
  CCE27945.1  18 TTMLQRKYQALLDRSTPFVLYRWVGTGVTLLLFFLRIFFLQGWYIVAYALGIYLLNLFLAFLQPKFDPSSDA--LDQEMEDGSvgTLPTKQDEEFKPFI 114
                 56789***************************************************************9766..456666666669************* PP

        Rer1 100 rrlpEfkfWlsatkailialvltffevfdvpVfwpiLlvyfivlfvltmrrqikhmikykyvpfdlgKkky 170
                 rrlpEfkfW+ at+a++i++++tffe+f++pVfwpiL++y+i+lfvltmr+qi+hm+ky+yvpf++gKkky
  CCE27945.1 115 RRLPEFKFWYWATRAVAISFFCTFFEFFNIPVFWPILVMYWIILFVLTMRKQIQHMVKYRYVPFTMGKKKY 185
                 **********************************************************************9 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   6.8e-06     0.061       6      67 ..      39      97 ..      34     111 .. 0.84
   2 ?    2.4   1.8     0.012   1.1e+02       4      52 ..     121     167 ..     118     176 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.8e-06
     DUF4131  6 alvllalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqllesgq 67
                 +v  ++ lll++l++++l  + ++ v+ +l+++ll ++l f+++   p+++ l+q +e+  
  CCE27945.1 39 RWVGTGVTLLLFFLRIFFL--QGWYIVAYALGIYLLNLFLAFLQPKFDPSSDALDQEMED-G 97
                5777778888888888887..999********************************9994.3 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.012
     DUF4131   4 plalvllalllllllllllllrrrprrrvllllllllllallgfalrap 52 
                  +++++  ++++ +++ ++ +   + + ++ +l ++ +++++     + 
  CCE27945.1 121 KFWYWATRAVAISFFCTFFEF--FNIPVFWPILVMYWIILFVLTMRKQI 167
                 567777777777777777766..78888888888887777776655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1367.49
//
Query:       CCE27946.1  [L=83]
Description: uncharacterized protein CPUR_01420 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 664.53
//
Query:       CCE27947.1  [L=88]
Description: uncharacterized protein CPUR_01421 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 747.48
//
Query:       CCE27948.1  [L=78]
Description: uncharacterized protein CPUR_01422 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 608.37
//
Query:       CCE27949.1  [L=336]
Description: related to gibberellin 20-oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-27   94.5   0.0    1.2e-26   93.8   0.0    1.3  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    4.9e-18   65.5   0.0      8e-18   64.8   0.0    1.3  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   1.3e-30   1.2e-26       1     118 []      14     139 ..      14     139 .. 0.91

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 1.3e-30
      DIOX_N   1 iPvidlspl..sddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdg........... 84 
                 iP+id+s++  + + +r+++a+++ + +++ Gf+y++nh +p+ +++++f  +++FFal +e+K++l    ++++rGys++g+ek ++           
  CCE27949.1  14 IPLIDFSKFlnGGPHERQSTAQEILHGFQTAGFIYLKNHPIPAHVLQRIFIRSATFFALDDETKLRLqwTTPEANRGYSSPGREKASQlvdvsevskir 112
                 9********9767799***************************************************877788***************88888888888 PP

      DIOX_N  85 .kkldwkesfdlgtelpeddpagkplegpnqwPee 118
                  + +d+kes+++g+++          e pnqwP+e
  CCE27949.1 113 tQAPDLKESLEIGRDTR--------PEFPNQWPDE 139
                 88888888888888843........469*****96 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0     9e-22     8e-18      16     100 ..     209     297 ..     188     298 .. 0.79

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 9e-22
                   ------EEEEEESSSEEEEEEE-TT---EEEE..TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGS....EEEEEEEE- CS
  2OG-FeII_Oxy  16 pevilglgahtdaslltillqddvgglevfkd..gkwlrvppvdnslivniGdallflsngryksvlHrVlpvneger....Rvsiayfie 100
                   p    + g+h+d++ +t+l+qd+ ggl+v  +  g++++ +p +++++vn+Gd l  +sn   +s+ HrV +   +++    R+siayf++
    CCE27949.1 209 PG-QTRAGEHSDYGSITLLFQDSQGGLQVK-SptGDFVDATPIEGTIVVNAGDLLARWSNDTIRSTIHRVVEPPSQDDehpaRYSIAYFCN 297
                   22.44579*********************5.44588***********************************444444458*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2295.24
//
Query:       CCE27950.1  [L=279]
Description: uncharacterized protein CPUR_01424 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-13   49.6   2.5    4.5e-13   49.1   0.1    2.3  2  DnaJ        DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.1   2.5e-17   4.5e-13       1      63 []      21      82 ..      21      82 .. 0.98
   2 ?   -0.6   0.4     0.083   1.5e+03      36      57 ..     152     173 ..     146     180 .. 0.77

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 2.5e-17
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                d+Ye+Lgv+    +++I +a+rk +lk+HPDk  + +  ++  ++ ++A ++Ls+p+ R+ YD
  CCE27950.1 21 DLYELLGVDALTPKEDIHRAWRKASLKHHPDKA-GAKFDAQTWEKFERARDILSEPSARAVYD 82
                79*******************************.99999999********************9 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.083
                 HHHHHHHHHHHHHHHHHHTSHH CS
        DnaJ  36 dpeaeekFkeineAyevLsdpe 57 
                 +  a+++ + ++eA   L+d++
  CCE27950.1 152 QAHAAQEMEDLAEARRRLKDKR 173
                 4578889999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1854  (0.103408); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 1890.49
//
Query:       CCE27951.1  [L=548]
Description: uncharacterized protein CPUR_01425 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-80  269.7   0.0    5.6e-80  268.8   0.0    1.5  2  DUF2235   Uncharacterized alpha/beta hydrolase domain (DUF223


Domain annotation for each model (and alignments):
>> DUF2235  Uncharacterized alpha/beta hydrolase domain (DUF2235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.8   0.0   3.1e-84   5.6e-80       1     288 []      13     304 ..      13     304 .. 0.94
   2 ?   -3.2   0.0      0.23   4.2e+03     152     158 ..     344     350 ..     319     424 .. 0.60

  Alignments for each domain:
  == domain 1  score: 268.8 bits;  conditional E-value: 3.1e-84
     DUF2235   1 krlvlcfDGTgnkfdgdtee...........sdsNvlklfralkrsdkdkkeqvvyYqpGiGtetyellsslksaleklldgafgsgldehvveaYefl 88 
                 krl++c+DGT+ ++d    +            +sNv++++r++kr++ d++ q++ Y++G+G ++        +al+++++gafg gl e+v+e+Y +l
  CCE27951.1  13 KRLIVCCDGTWMNSDYGFARsrlfgkkdtlqIPSNVTRISRCFKRRCADGTLQIISYESGVGSGS--------NALDSITGGAFGAGLGERVREVYLYL 103
                 89*************99877899***************************************665........789*********************** PP

     DUF2235  89 mrnyepgDeIylfGFSRGAytaRalagmlekvGllskgneeqvpfayklyekrekkkdkekeeeskekekk...............aekkekekasrse 172
                 + n+ +gDeI+l+GFSRGA+taR++agm+ k+Gll++++ e++  ++k+ ++++k + ++  ++   ++k                   ++  +++++ 
  CCE27951.1 104 CANFVDGDEIILVGFSRGAFTARSVAGMIGKLGLLTREGIEHFYPIFKDMQNWQKYDYEDPFPDIPFRNKPkgpaadgeyrfrlekLGLTRVYQNTNQL 202
                 *******************************************************9999999988877777999********99875666677788899 PP

     DUF2235 173 vkikflGvfDTVgslGipesallekaakklpftdaklsssvkharhalaldErrakFkptlwekekekeekeeeekeqdlkevwFpGvHsdvGGGyeen 271
                 +++k++Gv+DTVgslGip++++l    +kl ++d+ ls++++ha++alaldE+ra+F+p++we++++++       ++dl++vwFpG+H+++GGG++++
  CCE27951.1 203 ITVKAIGVWDTVGSLGIPKIPWL----EKLGWHDTALSDRIEHAFQALALDETRASFSPAVWERPRRDR------LHTDLRQVWFPGNHGNCGGGWDDQ 291
                 9**********************....56*********************************9988443......68*******************777 PP

     DUF2235 272 eekeelsdipLawmvre 288
                      +++ +Lawm+++
  CCE27951.1 292 G----IANCSLAWMMDQ 304
                 6....**********86 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.23
     DUF2235 152 eskekek 158
                 ++k++++
  CCE27951.1 344 KKKNRRR 350
                 2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3790.20
//
Query:       CCE27952.1  [L=407]
Description: uncharacterized protein CPUR_01426 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-07   31.3   0.0    1.9e-07   30.7   0.0    1.2  1  GCV_T     Aminomethyltransferase folate-binding domain


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.1e-11   1.9e-07      40     122 ..      56     141 ..      54     167 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.1e-11
       GCV_T  40 aglfDvShmgkievsGpdaaalLqrlltndis...klkpgkatytlllnedGgvidDlivarldedefllvvnaankekdlawlek 122
                 agl  +++ + + v+Gpda+++L+ ++t++i+   +l+  +a y+ +ln +G+v++Dl+++    + +  +++  n ++d   +e+
  CCE27952.1  56 AGLAALTSRQLLSVTGPDATKFLHGIVTANITgpdGLPRTDAFYSGFLNATGRVVHDLFIYPFRGQALSALSTQYNPDEDGYLIEA 141
                 888899999999*******************955567779*********************9998888888888887777655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2890.28
//
Query:       CCE27953.1  [L=282]
Description: uncharacterized protein CPUR_01427 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2042.00
//
Query:       CCE27954.1  [L=570]
Description: related to ATP-dependent RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-40  138.1   0.0    6.6e-40  136.7   0.0    1.7  2  DEAD        DEAD/DEAH box helicase
    2.2e-30  105.2   0.0      6e-30  103.9   0.0    1.7  2  Helicase_C  Helicase conserved C-terminal domain
    2.4e-05   24.4   0.0    6.5e-05   23.0   0.0    1.7  2  ResIII      Type III restriction enzyme, res subunit
     0.0027   16.5   0.0     0.0036   16.1   0.0    1.2  1  SNF2_N      SNF2 family N-terminal domain
  ------ inclusion threshold ------
      0.064   12.9   0.0       0.76    9.4   0.0    2.1  2  SWI2_SNF2   SWI2/SNF2 ATPase
       0.08   13.2   0.2        1.5    9.1   0.0    2.7  2  AAA_22      AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   0.0   2.2e-43   6.6e-40       1     174 [.     163     337 ..     163     339 .. 0.92
   2 ?   -2.8   0.0       1.5   4.6e+03      56     104 ..     402     451 ..     374     454 .. 0.57

  Alignments for each domain:
  == domain 1  score: 136.7 bits;  conditional E-value: 2.2e-43
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 t iQ+ +ip+il+g+d+++  +TGsGKT af++p+lq+ +e  + ++   ++++PtreLa q+++++k + ++ +l+v l++gg++ r q  +l ++++
  CCE27954.1 163 TGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAE--DPSAIFGVVLTPTRELALQIYEQFKAISSPQSLKVILVTGGSDMRPQAIALAQRPH 259
                 569************************************97..99999*************************99*******************999** PP

                 EEEEEHHHHHHHH....HCTSSHCTTEEEEEEETHHHHHHT....TTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddll....stgklnlsqvrflVlDEadrlldq....gfsdfinrilnqlpqitcdgk.lqrqvivlSATlpkdvk 174
                 +v++tpgrl+d++    ++    l++vrf+VlDEadrll      ++ ++++++l+ lp      + ++rq+++++AT++ +v+
  CCE27954.1 260 VVIATPGRLADHIrtsgEDTICGLRRVRFVVLDEADRLLHAvgpgSMLPDVEECLSVLP------PaANRQTLLFTATITPEVR 337
                 *************7654333355******************988889999999999995......557788********97776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
                 SHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
        DEAD  56 treLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdivvgt 104
                  r  + + l++l +++++   ++++ + + ++ d+l++++++ ++i+v+t
  CCE27954.1 402 NRTSTADYLHHLLRLLDHRVTSLHSKLPQRQRIDNLARFRASaARILVAT 451
                 45555555555555555422233334445555555555554457788777 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.9   1.5e+04      16      29 ..     322     336 ..     314     352 .. 0.77
   2 !  103.9   0.0     2e-33     6e-30       7     111 .]     384     489 ..     378     489 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.9
                 TSEEEEEESSHH.HH CS
  Helicase_C  16 ggkilifvntid.rl 29 
                 ++++l+f+ ti+ ++
  CCE27954.1 322 NRQTLLFTATITpEV 336
                 789999999998655 PP

  == domain 2  score: 103.9 bits;  conditional E-value: 2e-33
                 HHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHH CS
  Helicase_C   7 lell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqri 104
                   +l ++ +++++++if+n++++++ ++ ll+  + +v+ lh++lpq++r++ l++f++   ++L+atdva+rG+dip v lV+n+d+pr++++yi+r+
  CCE27954.1 384 HVFLlTEANKDKTTIIFCNRTSTADYLHHLLRLLDHRVTSLHSKLPQRQRIDNLARFRASAARILVATDVAARGLDIPAVGLVVNYDIPRDPDDYIHRV 482
                 4444489999**************88666666669**************************************************************** PP

                 TTSSSTT CS
  Helicase_C 105 GRtgRag 111
                 GRt+Rag
  CCE27954.1 483 GRTARAG 489
                 *****97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.6   7.7e+03      95     113 ..      83     103 ..      63     122 .. 0.67
   2 !   23.0   0.0   2.2e-08   6.5e-05      32     169 ..     184     332 ..     175     334 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.6
                 --.........-SEEEEEHHH CS
      ResIII  95 ka..kekdstnkkilvttiqs 113
                 ++  +e+d+++ + +++ti++
  CCE27954.1  83 DEneSESDQEHLQAILSTIKA 103
                 223346677777777777765 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.2e-08
                 STTSTHHHHHHHHHHHH-S.....-E.EEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.........-SEEEEEHHHHHHTH........H CS
      ResIII  32 aTGtGKTlvaaklierllkkgkeekf.lflvprkslleqtleefkkflseaykeigkkvsgdkkka..kekdstnkkilvttiqsldadseeeeeesee 127
                  TG+GKT+  a  i + + + +   f ++l p+++l  q +e+fk ++s++  +    v+g ++++      ++  +++++t  +l  ++ +++ e++ 
  CCE27954.1 184 RTGSGKTVAFAVPILQKWAEDPSAIFgVVLTPTRELALQIYEQFKAISSPQSLK-VILVTGGSDMRpqAIALAQRPHVVIATPGRLADHI-RTSGEDTI 280
                 5*********99999999988877665899********************9885.44455555555433445778889999999999998.55888899 PP

                 HHTTT-SEEEEETGGGTTS........TTTHHHHHT---...SEEEEEESS- CS
      ResIII 128 llrdrfdviiiDEaHrlgak.......kswreilekfke...avllglTATp 169
                  +  r  +++ DEa rl  +         ++e+l  +++      l +TAT+
  CCE27954.1 281 CGLRRVRFVVLDEADRLLHAvgpgsmlPDVEECLSVLPPaanRQTLLFTATI 332
                 9999999*******99999766554443777777776554447788899996 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-06    0.0036      54     189 ..     175     297 ..      60     338 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-06
                 TT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--H.HHHHHHHHHHHHH-TTS-EEE--SSHHHH----------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  54 svrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPa.slldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladyd 151
                 + r +i    +G GKTv     il      +k++e    d+ a   +++ P+ +l+ q ++++++  s+++l+v+  +g++ m+++    a +l++  +
  CCE27954.1 175 KGRDCIGGSRTGSGKTVAFAVPIL------QKWAE----DPSAIFGVVLTPTrELALQIYEQFKAISSPQSLKVILVTGGSDMRPQ----AIALAQRPH 259
                 556666666778888888888888......22222....23334467889999**************************9877777....8999***** PP

                 EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 152 vvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtl 189
                 vvi t  +l+ +   + + +    ++ ++vvlDE+ +l
  CCE27954.1 260 VVIATPGRLADHIRTSGEDTICGLRRVRFVVLDEADRL 297
                 **********7775555555555566899******987 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00026      0.76      27     131 ..     185     296 ..     179     331 .. 0.73
   2 ?    1.1   0.0     0.089   2.7e+02     170     218 ..     380     428 ..     367     434 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00026
   SWI2_SNF2  27 qGSGKsltmvf.lakklleeelknpkvvvvtDRkdLdkQlsktfakageek...pkqaesrkeLkell..ekesekiifttiqKfeee..ekeklevls 117
                 +GSGK++  ++ + +k +e + +    vv+t  ++L  Q++++f+++++ +   +  ++ +++++ +    +++++++++t  +++++  ++ + + + 
  CCE27954.1 185 TGSGKTVAFAVpILQKWAE-DPSAIFGVVLTPTRELALQIYEQFKAISSPQslkVILVTGGSDMRPQAiaLAQRPHVVIATPGRLADHirTSGEDTICG 282
                 8****98654413444444.7777777999999*************95443111345677777776543336689999999999984432222346667 PP

   SWI2_SNF2 118 ereniivlvDEaHR 131
                  r+  +v+ DEa R
  CCE27954.1 283 LRRVRFVVLDEADR 296
                 77777999999988 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.089
   SWI2_SNF2 170 geyidkYtikeaveDgavvpilYesrlaklelkeeekldeefeeiteel 218
                 ++y++ + ++ea +D++++       +a+   +  + ld+++ ++ ++l
  CCE27954.1 380 EHYLHVFLLTEANKDKTTIIFCNRTSTADYLHHLLRLLDHRVTSLHSKL 428
                 479*************996544333333333333333666666666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00051       1.5      70     134 ..     237     337 ..     183     339 .. 0.47
   2 ?    0.9   0.1      0.17   5.1e+02      48      73 ..     401     425 ..     367     456 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00051
      AAA_22  70 a...........................erlsseellealeqalraravielliiDEaqhlr....seealeeLrsllnl.....srkgvqliLvGtpe 132
                 +                           ++   +++++  e+ +   ++++++++DEa++l     +  +l ++ ++l +     +r+ + +   +tpe
  CCE27954.1 237 KvilvtggsdmrpqaialaqrphvviatPGRLADHIRTSGEDTICGLRRVRFVVLDEADRLLhavgPGSMLPDVEECLSVlppaaNRQTLLFTATITPE 335
                 25555555555555555443222223322233333334444444444449**********755654244443333333333323436666666666666 PP

      AAA_22 133 lr 134
                 +r
  CCE27954.1 336 VR 337
                 65 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.17
      AAA_22  48 psstsskdllrellralglelkaerl 73 
                  + ts +d l++llr l+++  +  +
  CCE27954.1 401 CNRTSTADYLHHLLRLLDHRVTS-LH 425
                 23344456666666666665555.22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4135.63
//
Query:       CCE27955.1  [L=532]
Description: probable MAP kinase kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.9e-62  208.7   0.0    1.2e-61  208.4   0.0    1.1  1  Pkinase         Protein kinase domain
    5.2e-33  114.4   0.0    6.9e-33  114.0   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    5.6e-06   25.9   0.0    8.5e-06   25.3   0.0    1.2  1  Kinase-like     Kinase-like
     0.0006   18.7   0.0    0.00088   18.1   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.4   0.0   2.7e-65   1.2e-61       3     264 .]     237     505 ..     235     505 .. 0.88

  Alignments for each domain:
  == domain 1  score: 208.4 bits;  conditional E-value: 2.7e-65
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHH....HHSS- CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladlle....rkgsl 95 
                 +l +lGeG+ G V k+v +  +  +A+K+i ++ + + k+ +++rE+ + k++ +++i+r+y++f +  ++++ + +e++egg+l+++++      g  
  CCE27955.1 237 ELGNLGEGAGGAVTKCVLTGGKTVFALKIITTNPDPDVKK-QIVRELGFNKECASDHICRYYGAFVDpsTSTISIAMEFCEGGSLDSIYKevkrLGGRT 334
                 5678*****************************9999885.9************************96667888**************99775434458 PP

                 -HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS CS
     Pkinase  96 seeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgk 194
                  e+ + ki + +l+gl ylH ++iiHrD+Kp+NiL+ ++g +K++DFG++  + ++ ++++f+gts+Y+APE +++++y+ ++DvWs Gv+l+e+   +
  CCE27955.1 335 GEKVLGKISEGVLRGLTYLHTRRIIHRDIKPSNILLCRDGAVKLCDFGVSGDFGTKGEANTFIGTSYYMAPERITGRPYTITSDVWSTGVTLLEVAQHR 433
                 899************************************************************************************************ PP

                 -STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS....-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 195 ppfsgekgkekvekeldqlekilkilg..etkeklpeasei....seeakdllkkllkkdpkkRltaeellqhpyl 264
                  pf+++ ++ + ++ l +   ++ i++    ++k + +  +    s+++k +++ +l+k+ ++R +  ++l+hp++
  CCE27955.1 434 FPFPADGTEMQPRAGLID--LLTYIVTqpIPQLKDEPD--MdvvwSDNFKYFIECCLEKEANRRASPWKMLDHPWM 505
                 ****76666655566555..334444423223333333..24477******************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   0.0   1.5e-36   6.9e-33       6     205 ..     240     435 ..     235     500 .. 0.84

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 1.5e-36
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHT..CTTT CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkk..ekek 99 
                  +lGeGa G V ++ l+      ++  a+K+++ + + + k+++++e+ + k++  ++i +++g+ +  +++++ i +e+++gG+L++  ++      +
   CCE27955.1 240 NLGEGAGGAVTKCVLT----GGKTVFALKIITTNPDPDVKKQIVRELGFNKECASDHICRYYGAFVdpSTSTISIAMEFCEGGSLDSIYKEVkrLGGR 333
                  79**************....889999****************************************7667779*************998877112456 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwE 197
                  +  k l +++  v +G+ yL++++++Hrd+   N+Ll+++  vk++DfG++ d     +  ++++      +mapE ++ + +t  sDvWs Gv+l E
   CCE27955.1 334 TGEKVLGKISEGVLRGLTYLHTRRIIHRDIKPSNILLCRDGAVKLCDFGVSGDF---GTKGEANTFIGTSYYMAPERITGRPYTITSDVWSTGVTLLE 428
                  667778899*********************************************...444555566677889************************** PP

                  HHTTSSGT CS
  Pkinase_Tyr 198 iftlgesp 205
                  +++  + p
   CCE27955.1 429 VAQ-HRFP 435
                  *98.4445 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.9e-09   8.5e-06     155     255 ..     348     441 ..     322     462 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.9e-09
  Kinase-like 155 rlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpE.llgsrggytrknktkmthkldaWqlGlviyriwclklP 249
                  r   +L+ + ++h ++++ n+ll ++g ++l +f+     gtk+ +++      +  pE ++g+           +t+  d+W  G++ + ++    P
   CCE27955.1 348 RGLTYLHTRRIIHRDIKPSNILLCRDGAVKLCDFGVSGDFGTKGEANTFIgtSYYMAPErITGR----------PYTITSDVWSTGVTLLEVAQHRFP 435
                  55689****************************************8766544335555504444..........689*****************9999 PP

  Kinase-like 250 ltlate 255
                  +  +  
   CCE27955.1 436 FPADGT 441
                  976655 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     2e-07   0.00088     314     396 ..     345     418 ..     336     422 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2e-07
  Pkinase_fungal 314 DaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhD 396
                      +++g+  L+ + +i+HrDi   Nil++     ++    L D+ +  + ++ + e  a++ +GT ++ma e + g   ++  D
      CCE27955.1 345 GVLRGLTYLH-TRRIIHRDIKPSNILLC-----RDGAVKLCDFGVSGDFGT-KGE--ANTFIGTSYYMAPERITGRPYTITSD 418
                     57889999**.*****************.....899999****99999995.344..4689********99888766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3846.16
//
Query:       CCE27956.1  [L=773]
Description: uncharacterized protein CPUR_01430 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-57  194.8   0.0    6.4e-54  183.4   0.0    3.1  3  TruD      tRNA pseudouridine synthase D (TruD)


Domain annotation for each model (and alignments):
>> TruD  tRNA pseudouridine synthase D (TruD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.02   3.6e+02      15      32 ..      33      50 ..      19      64 .. 0.81
   2 !  183.4   0.0   3.6e-58   6.4e-54      38     312 ..     203     514 ..     192     529 .. 0.84
   3 !    6.9   0.0   0.00013       2.3     388     416 .]     732     760 ..     698     760 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.02
        TruD 15 gGrlrespeDFiVeEiee 32
                 G +r +  DF V+Ei e
  CCE27956.1 33 TGDMRVRFSDFQVNEIGE 50
                6999***********944 PP

  == domain 2  score: 183.4 bits;  conditional E-value: 3.6e-58
        TruD  38 eadegeylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlisirkvepeeleal..eikdvelevvgrarrklrlGdLaGNkFeirv 134
                 ++  g+y+ +++ k n+dt+d+v++++r l+i+ +++g+aGtKD+rA TtQ  s+r+ ++++++ l  ++ ++   +   a+++++lG+L+GN+F i++
  CCE27956.1 203 DEPVGQYVHFTLYKDNRDTMDAVSQISRLLRIKPQAIGYAGTKDRRASTTQRCSVRHQRKRAMAGLngKLWGIATGDYEYAENPIHLGQLMGNEFIITL 301
                 45569*********************************************************999988999**************************** PP

        TruD 135 rdv.aeee..............eaakraeeileeleekggvPNyfGvQRFGsrrpvthlvGkaivkgdleeAvelyvgkpfeeesedtreareav.... 214
                 +++ +++e               +++++e+ +++++ +g   NyfG+QRFG+    th +Gk i+++d+e+Av++++   +e       ea ++     
  CCE27956.1 302 KNCkMSDEdamvpsatplerlaRMKTNVESAMAHMASHG-WINYFGHQRFGTHDVGTHQIGKLILRDDFEGAVHALLQYDAEIAARA--EAGHVPdept 397
                 **9755556888888888777666667777777777766.***********************************997765432221..2222113344 PP

        TruD 215 ..............aetgdleealeelpkslryErallkrLae....kpkdykkAlealpknLqrlFvhAyqSylFNrvlseRlerglpldepveGDvv 295
                               +  +dl++a +++p+++  E  +l++L++    +++d+++A++ + + L+++++hAyqS ++N++ s R       +++v+GD+v
  CCE27956.1 398 krddylrhqacmlfQTGKDLDRAARLIPRRFAGESCVLRHLTRagkaSSRDFAGAITHITRGLRSMYLHAYQSLVWNHAASLRYTLH--GTNVVKGDLV 494
                 555557888888877799*************************9999999*********************************9955..679******* PP

        TruD 296 ifaeer...lpdtdrlqlvt 312
                 i a ++    p++++  + t
  CCE27956.1 495 IVAPDAadtHPQSSNAATST 514
                 *9988853333333333332 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.00013
        TruD 388 lelsaeedeltleFsLpkGsYATvvlrEi 416
                 ++++ ++  ++++F+L +  YATv lrE+
  CCE27956.1 732 AASEPTKIAVIVKFQLASSAYATVALREL 760
                 3445666679*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5590.14
//
Query:       CCE27957.1  [L=223]
Description: uncharacterized protein CPUR_01431 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-54  183.6  12.1    3.6e-54  182.9  12.1    1.3  1  PTPLA     Protein tyrosine phosphatase-like protein, PTPLA


Domain annotation for each model (and alignments):
>> PTPLA  Protein tyrosine phosphatase-like protein, PTPLA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.9  12.1     2e-58   3.6e-54       1     163 [.      65     213 ..      65     214 .. 0.96

  Alignments for each domain:
  == domain 1  score: 182.9 bits;  conditional E-value: 2e-58
       PTPLA   1 QtlavlEvlhallglvrspvlttamQvasRllvvwgvvelfpelqtkspavtllllaWsvtEviRYsfyalklslgkvpklltwlRYtlfivLYPlGva 99 
                 Qt+a++Ev+h+llg+vr+p++tt+mQv+sRll+vw +v++ p l+ + p+++++llaWsvtEviRYs++al+l ++  p++ltw+RYt+f+vLYPlG++
  CCE27957.1  65 QTMALMEVIHSLLGVVRAPLATTIMQVSSRLLLVWPIVNTWPFLALS-PFYASMLLAWSVTEVIRYSYFALSL-AQMLPRALTWVRYTTFYVLYPLGIT 161
                 9******************************************9888.*************************.799********************** PP

       PTPLA 100 sElvliyaalpvlkeskklsielpnklnfsfsykyflllllllyvpglyvlythmlkqRrkvlg 163
                 sE++l+y a   + +++             +  k +l+++l++yvpg+yvl+thm+kqRrkvl+
  CCE27957.1 162 SECMLVYGATGPAGQRS------------GWIGKGVLYAILAIYVPGSYVLFTHMMKQRRKVLR 213
                 **********7777666............6889999**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1636.01
//
Query:       CCE27958.1  [L=401]
Description: uncharacterized protein CPUR_01432 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0011   19.6   6.5     0.0038   17.9   6.5    1.9  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0013   18.5   0.0     0.0023   17.7   0.0    1.3  1  PGAP1          PGAP1-like protein
     0.0099   15.2   0.0      0.029   13.6   0.0    1.8  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   6.5   6.3e-07    0.0038       3      96 ..       9     166 ..       6     381 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6.3e-07
                    EE--GC.....GCHHHHHHHHCCTCEEEEE--TTS..TS-GGCS--HHH...CHHHHHHHCCTT..............................TT CS
  Abhydrolase_6   3 llHGagssassWlvapLaallaagvhvlapDlpGh..Grsdpppldled...ladlaalldelaa............................ggg 65 
                    ++HG       + v+++   l+a v   a+   Gh  G+ ++   d++    l+d++a  ++l++                            +++
     CCE27958.1   9 FIHG-------FKVRRISSPLPALVSLPAYTVTGHfqGGESTFGNDYQFtkhLRDIVA--QKLPKvhvrvlvypkleekvidmevasgassptVDP 95 
                    6788.......85555544444444334788889999645555555555224444422..222223344444555555666688889998888666 PP

                    SE..EEEEETCHHHHHHHHHHCC..........EEEEES-...................................... CS
  Abhydrolase_6  66 pv..vlvGHSlGGalalaaapla........lvvgvlldp.....................................p 96 
                     v  +l+GHS+GG++a++++ ++                                                       
     CCE27958.1  96 SVrtILIGHSMGGIVAAELVIALasekpiysE-------DgiekedrpifsglmfpyvqgvlafdtpylgispgvvaH 166
                    6678**************55555344444440.......343333333333333333333333332333332222220 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.8e-07    0.0023      92     110 ..      98     116 ..      76     131 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.8e-07
       PGAP1  92 sviliGHSmGGivaraalt 110
                 + iliGHSmGGiva  +++
  CCE27958.1  98 RTILIGHSMGGIVAAELVI 116
                 559**********976654 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   4.9e-06     0.029      71      94 ..      92     115 ..      68     124 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.9e-06
  Hydrolase_4  71 eehpelplfllGhSmGGliallyl 94 
                  +  p  + +l+GhSmGG++a++++
   CCE27958.1  92 TVDPSVRTILIGHSMGGIVAAELV 115
                  55678899************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2870.92
//
Query:       CCE27959.1  [L=1481]
Description: probable component of SWI/SNF global transcription activator complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-73  247.8   1.1    1.2e-73  247.8   1.1    2.8  3  SNF2_N       SNF2 family N-terminal domain
    5.2e-21   75.1   0.3    1.6e-18   67.0   0.0    3.7  3  Helicase_C   Helicase conserved C-terminal domain
    1.2e-18   66.9   0.1      3e-18   65.7   0.1    1.7  1  Bromodomain  Bromodomain
    3.4e-17   62.5  13.6    3.4e-17   62.5  13.6    6.7  6  HSA          HSA
    5.1e-15   55.8   0.9    5.1e-15   55.8   0.9    5.4  4  SnAC         Snf2-ATP coupling, chromatin remodelling complex
    1.4e-09   37.5   1.9    4.7e-09   35.9   1.9    2.0  1  QLQ          QLQ
  ------ inclusion threshold ------
      0.019   15.7   2.6      0.019   15.7   2.6    2.8  3  RBR          RNA binding Region


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.6   5.6         7   1.8e+04     298     321 ..      70      92 ..      57     142 .. 0.53
   2 ?   -1.4   3.2      0.29   7.5e+02     264     342 ..     370     450 ..     339     457 .. 0.69
   3 !  247.8   1.1   4.7e-77   1.2e-73      49     349 ..     606     890 ..     583     891 .. 0.87

  Alignments for each domain:
  == domain 1  score: -7.6 bits;  conditional E-value: 7
                 HHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 298 ksYnrllevlrkkalakllkrsea 321
                 ++ +++ +++ ++  ++ ++++e 
  CCE27959.1  70 SFLQQQQQQQQQQQ-QHQHQQHER 92 
                 33332222222221.111111111 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.29
                 -STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH.....................HHHHHH-HH.H-HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
      SNF2_N 264 lqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkk.alakllkrseaalksssksk.ekilelllelrq 342
                 +++l l + ++ + +++ ++ ++   l ++   +++  + ++  r+  +  kl k+++ a ++ +k+k   +l  + + r 
  CCE27959.1 370 MKSLALYAKQRALREKIGRQMTHYDNLAMTTNRAHYRRQKKQNVREArITEKLEKQQRDAREHREKKKhVDFLRVICHHRA 450
                 5678888888999999*************9988775544444444431445566666666666655554447666666655 PP

  == domain 3  score: 247.8 bits;  conditional E-value: 4.7e-77
                 HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  49 aeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkll 147
                 +++++++ +GiLaDemGLGKT+q+++li+   +         ++++ +gp+L++vP s+l++W  e+e++++s +  v+ +  ++    ++ ++ +  +
  CCE27959.1 606 ISLYNNNLNGILADEMGLGKTIQTISLIT---YLI-------ERKQQSGPYLVIVPLSTLTNWNLEFEKWAPSISRIVYKGPPNT----RKLQQEKIRQ 690
                 678999***********************...533.......345678**************************97677666654....3334566778 PP

                 ----EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH.---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 148 adydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavsk.LstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkll 245
                   ++v++ttY+++ ++         l++++w+ +++DEgh++kns+sk++ ++s+ + t+ r+iltGTP+qn+l++l+++l+f+ +++f++ +tfd+++
  CCE27959.1 691 GRFQVLLTTYEYIIKDR------PILSKIKWFHMIIDEGHRMKNSNSKLSATISQyYMTRFRLILTGTPLQNNLAELWAMLNFVLPNIFKSVKTFDEWF 783
                 899***********777......9*******************************778***************************************** PP

                 HHHHH............HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH- CS
                 xxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 246 qrpie............aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskek 332
                 ++p++            +++   ++rL+++l++++lrr kkdvek+lP+kte++i +k+s+ ++k+Y+   ++ ++   +kl +++    k +s     
  CCE27959.1 784 NTPFAntggqdkmelteEEQILVIRRLHKVLRPFLLRRLKKDVEKDLPDKTEKVIKCKFSALQAKLYK---QMVTH---NKLVVSDGKGGKTNS---RG 873
                 *************99888888899********************************************...22222...222223222333333...33 PP

                 HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxx RF
      SNF2_N 333 ilelllelrqacnhpql 349
                 + +++++lr+ cnhp +
  CCE27959.1 874 LSNMIMQLRKLCNHPFV 890
                 8899**********976 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.4      0.54   1.4e+03      33      70 ..     404     442 ..     370     447 .. 0.73
   2 ?    2.8   0.0     0.055   1.4e+02       5      73 ..     632     699 ..     628     702 .. 0.67
   3 !   67.0   0.0   6.4e-22   1.6e-18       2     111 .]     914    1027 ..     913    1027 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.54
                 HHH.HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEE CS
  Helicase_C  33 kll.lekkgikvavlhgelpqnereeileqfnkgesdvL 70 
                 ++  ++k++++ a+++ +l++++r++  ++ +k+++d+L
  CCE27959.1 404 HYRrQKKQNVREARITEKLEKQQRDAREHREKKKHVDFL 442
                 3332345589999************99999999988877 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.055
                 HHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C   5 allellkleeeggkilifvntidrlekvklllekk..gikvavlhgelpqnereeileqfnkgesdvLiat 73 
                  +++l++++++ g  l++v+  +  +  +l  ek   +i+ +v+ g  p n r+   e+ ++g+++vL++t
  CCE27959.1 632 LITYLIERKQQSGPYLVIVPLSTLTNW-NLEFEKWapSISRIVYKG--PPNTRKLQQEKIRQGRFQVLLTT 699
                 566667777777777777777774432.222233322455555555..*********************99 PP

  == domain 3  score: 67.0 bits;  conditional E-value: 6.4e-22
                  HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSS.EEEESGGGTSSSTSTTESEEEESSS CS
  Helicase_C    2 kleallell.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn..kgesd.vLiatdvaerGidipkvnlVinfdl 93  
                  k+e l + l k ++ g+++l+f + +  ++   ++l + +++++++l+g+++++er + l++fn  + ++  +L++t++++ G++++ +++Vi++d 
  CCE27959.1  914 KFELLDRVLpKYQATGHRVLMFFQMTAIMDImEDYL-RYRKFEYLRLDGTTKSDERSDLLREFNapDSKYFmFLLSTRAGGLGLNLQTADTVIIYDS 1009
                  56677777789999*************887745666.6668***********************775666679************************ PP

                  SSSHHHHHHHHTTSSSTT CS
  Helicase_C   94 prnvtsyiqriGRtgRag 111 
                  ++n+++  q+ +R++R+g
  CCE27959.1 1010 DWNPHQDLQAQDRAHRIG 1027
                  ****************97 PP

>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.1   1.2e-21     3e-18      11      83 ..    1333    1405 ..    1327    1406 .. 0.95

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 1.2e-21
                   TTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHH CS
  Bromodomain   11 hklaepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyelae 83  
                   + +  pF + ++++e+ dyy +i+ P+++++I+ ++++++Y+ l d+++d+ l++ N+++yn++gs +y++a+
   CCE27959.1 1333 RLIIGPFVKLPPKREYADYYVIIQSPICMNQIQTRIKKEEYSCLSDLRKDFDLMIRNCQTYNEDGSILYQDAK 1405
                   567789*****************************************************************97 PP

>> HSA  HSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -26.8  30.9         7   1.8e+04      66      66 ..     103     103 ..      59     153 .. 0.58
   2 ?   -6.1   6.0         7   1.8e+04      46      68 ..     403     425 ..     402     426 .. 0.88
   3 !   62.5  13.6   1.3e-20   3.4e-17       1      71 []     427     497 ..     427     497 .. 0.98
   4 ?   -0.9   0.1      0.82   2.1e+03      16      48 ..     710     741 ..     707     744 .. 0.79
   5 ?   -0.2   0.0      0.49   1.2e+03      15      46 ..     849     880 ..     845     883 .. 0.91
   6 ?   -5.2   1.6         7   1.8e+04      56      67 ..    1208    1219 ..    1203    1222 .. 0.39

  Alignments for each domain:
  == domain 1  score: -26.8 bits;  conditional E-value: 7
                 X CS
         HSA  66 r 66 
                 +
  CCE27959.1 103 E 103
                 1 PP

  == domain 2  score: -6.1 bits;  conditional E-value: 7
                 HHH--XXXXXXXXXXXXXXXXXX CS
         HSA  46 kyhnniekeeqkriereekerlk 68 
                 ++ ++++k+ +++ + +ek +++
  CCE27959.1 403 AHYRRQKKQNVREARITEKLEKQ 425
                 68899999999999999999987 PP

  == domain 3  score: 62.5 bits;  conditional E-value: 1.3e-20
                 XXXXXXXXX--HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--XXXXXXXXXXXXXXXXXXX.. CS
         HSA   1 rqeperrqkthhdylLeeilwhakdfkeerkskrakakklaravakyhnniekeeqkriereekerlkalk 71 
                 r+++e+r+k++h ++L  i++h+++++e+++s+r+k  kl+r +   h niekeeqkrier++k+rl+alk
  CCE27959.1 427 RDAREHREKKKHVDFLRVICHHRAEIQESANSQRNKFHKLSRLMYGQHFNIEKEEQKRIERTAKQRLQALK 497
                 689******************************************************************97 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.82
                 HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         HSA  16 Leeilwhakdfkeerkskrakakklaravakyh 48 
                 L  i+w+   + e ++ k +  +kl+  +++y 
  CCE27959.1 710 LSKIKWFHMIIDEGHRMK-NSNSKLSATISQYY 741
                 677888888888888877.77788888898885 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.49
                 HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         HSA  15 lLeeilwhakdfkeerkskrakakklaravak 46 
                 l ++++ h k +  + k  +++ + l+ ++++
  CCE27959.1 849 LYKQMVTHNKLVVSDGKGGKTNSRGLSNMIMQ 880
                 6689**************************98 PP

  == domain 6  score: -5.2 bits;  conditional E-value: 7
                  XXXXXXXXXXXX CS
         HSA   56 qkriereekerl 67  
                  q r+ ++e +rl
  CCE27959.1 1208 QARKDKREVNRL 1219
                  333333333333 PP

>> SnAC  Snf2-ATP coupling, chromatin remodelling complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -14.9  18.5         7   1.8e+04      29      64 ..     109     147 ..      69     153 .. 0.58
   2 ?   -6.2   4.9         7   1.8e+04      40      64 ..     413     437 ..     401     439 .. 0.56
   3 ?    3.4   1.1     0.047   1.2e+02      33      65 ..     551     582 ..     529     584 .. 0.83
   4 !   55.8   0.9     2e-18   5.1e-15      14      77 .]    1133    1190 ..    1118    1190 .. 0.79

  Alignments for each domain:
  == domain 1  score: -14.9 bits;  conditional E-value: 7
                 ---------...-------HHHHHHHHHHHH-XXXXXXX CS
        SnAC  29 seLPefyek...dgveekkeekeeldeqlygrgkRaRke 64 
                 +e  e +e+   +g + ++++k +l+eq+ ++++R++++
  CCE27959.1 109 EEEEEQLEQvkeQGHDSDQDHKPKLQEQQQEQQQRQKQD 147
                 222223333222366777777778888888888888765 PP

  == domain 2  score: -6.2 bits;  conditional E-value: 7
                 -----HHHHHHHHHHHH-XXXXXXX CS
        SnAC  40 veekkeekeeldeqlygrgkRaRke 64 
                 v+e + +++ +++q ++r +R++k+
  CCE27959.1 413 VREARITEKLEKQQRDAREHREKKK 437
                 3333444444455556778888875 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.047
                 ------------HHHHHHHHHHHH-XXXXXXXX CS
        SnAC  33 efyekdgveekkeekeeldeqlygrgkRaRkev 65 
                 +f e+ + ee++ee+++ + ++y+  +R R+ev
  CCE27959.1 551 QFVEE-ESEEESEENSGKKVDYYAVAHRVREEV 582
                 45555.578888889999*************98 PP

  == domain 4  score: 55.8 bits;  conditional E-value: 2e-18
                  ......----SS-------------------HHHHHHHHHHHH-XXXXXXXXXXXXXXXXXXXX CS
        SnAC   14 dgserkplpsRLleeseLPefyekdgveekkeekeeldeqlygrgkRaRkevsYeDqlTEeefl 77  
                    +  ++ ++RL+ e+eLP++y ++     +  +ee d+ + grg+R+R +v+Y+D+lTEe++l
  CCE27959.1 1133 A-TG-RKPKPRLMGEEELPDIYLNE----SNVIEEEVDDTILGRGARERTKVRYDDGLTEEQWL 1190
                  2.22.3449***************4....6777788899************************7 PP

>> QLQ  QLQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   1.9   1.8e-12   4.7e-09       1      35 []     190     224 ..     190     224 .. 0.98

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.8e-12
         QLQ   1 aFtaqQlqeLkaQilAfKyLsknqPvPpeLqqaiq 35 
                 +F+ + l++L++Qi+AfK+L kn +v  +Lqqai+
  CCE27959.1 190 HFSLSHLALLRQQIQAFKLLGKNSGVTLQLQQAIF 224
                 7*********************************7 PP

>> RBR  RNA binding Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   1.1         7   1.8e+04      13      28 ..     244     260 ..     243     272 .. 0.70
   2 ?   15.7   2.6   7.4e-06     0.019      27      47 ..    1233    1253 ..    1205    1261 .. 0.70
   3 ?   -6.6   3.2         7   1.8e+04       2      13 ..    1270    1281 ..    1268    1285 .. 0.61

  Alignments for each domain:
  == domain 1  score: -4.9 bits;  conditional E-value: 7
         RBR  13 Pkstta.plkgasekaa 28 
                 P+ +++ p k+ s   +
  CCE27959.1 244 PARSSQePEKAPSTGPE 260
                 67778888888876554 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 7.4e-06
         RBR   27 aaaaakneppkipKKRGpKPG 47  
                  +a+ a++e++ +pKKRG+KPG
  CCE27959.1 1233 SASRASTEEIETPKKRGRKPG 1253
                  2244555*************9 PP

  == domain 3  score: -6.6 bits;  conditional E-value: 7
         RBR    2 qpgRkpgRgrpP 13  
                  ++ R++ +grp+
  CCE27959.1 1270 PKKRRGTQGRPS 1281
                  344555567666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3588  (0.200123); expected 358.6 (0.02)
Passed bias filter:                      751  (0.0418874); expected 358.6 (0.02)
Passed Vit filter:                       312  (0.017402); expected 17.9 (0.001)
Passed Fwd filter:                        86  (0.0047967); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 2.16u 0.38s 00:00:02.54 Elapsed: 00:00:00.57
# Mc/sec: 7824.31
//
Query:       CCE27960.1  [L=587]
Description: uncharacterized protein CPUR_01434 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-08   35.0   9.6      0.025   15.4   0.5    5.1  4  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.032   13.2   0.0       0.16   10.9   0.0    2.0  2  Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping prot
        1.1    8.6  14.1      0.016   14.7   3.9    2.7  3  DUF3246   Protein of unknown function (DUF3246)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00037       2.2       6      38 .]     102     135 ..      97     135 .. 0.88
   2 !   15.4   0.5   4.2e-06     0.025       8      38 .]     216     248 ..     210     248 .. 0.77
   3 !    9.8   0.1   0.00026       1.5      15      38 .]     327     350 ..     314     350 .. 0.82
   4 ?    2.7   0.1     0.044   2.6e+02      15      36 ..     374     395 ..     357     397 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00037
                 EEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 +l++Hs  vt ++ +p g  l+++s D+ v ++d
  CCE27960.1 102 VLKTHSRaVTTVSLDPAGGRLLTASLDCVVNFYD 135
                 6899*446**********************9998 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 4.2e-06
                 ESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 +GH s +t   ++p  + ++ +++ D t+riWd
  CCE27960.1 216 KGHiSEITTGTWHPTDRNVCvTAGTDSTLRIWD 248
                 79*8888666699999997445555*******9 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00026
                 EEEEETTSSEEEE.EETTSEEEEEE CS
        WD40  15 slafspdgawlas.GsdDgtvriWd 38 
                 +++ s+dg+++++ G+ D  +++Wd
  CCE27960.1 327 GIDISSDGRMVVTrGG-DDLIKLWD 350
                 6788******996699.*******9 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.044
                 EEEEETTSSEEEEEETTSEEEE CS
        WD40  15 slafspdgawlasGsdDgtvri 36 
                  +++sp+++ +++Gs+ g+++i
  CCE27960.1 374 NIRYSPYSTSIITGSETGHLHI 395
                 5679***********9999887 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.6e-05      0.16     182     237 ..     101     157 ..      88     161 .. 0.89
   2 ?   -1.3   0.0      0.14   8.3e+02     187     223 ..     218     256 ..     192     266 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.6e-05
    Ge1_WD40 182 lkieehs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGks 237
                 l ++ hs  +++ ++ p G  l tas d +v f+    +  ++ r +    Ph+ k+
  CCE27960.1 101 LVLKTHSrAVTTVSLDPAGGRLLTASLDCVVNFYDFASMTPSTLRSFKTVDPHETKK 157
                 667888878999************************999999999999999999986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.14
    Ge1_WD40 187 h.sliveaafsp.dGtalatasedGevkffqvyledeee 223
                 h s+i+++++ p d  +  ta +d +++ + v+ + +++
  CCE27960.1 218 HiSEITTGTWHPtDRNVCVTAGTDSTLRIWDVNNKRSQK 256
                 435777777765377778899999999999999877665 PP

>> DUF3246  Protein of unknown function (DUF3246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   3.9   2.6e-06     0.016      24      97 ..      41     113 ..       8     125 .. 0.75
   2 ?   -0.6   0.1      0.13   7.5e+02     132     168 ..     191     226 ..     182     286 .. 0.66
   3 ?   -0.9   0.2      0.15   8.8e+02      48      71 ..     558     581 ..     542     586 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.6e-06
     DUF3246  24 tktgsstitlistlsnssvstkaessitvvgtsstgsddddDdddetDceteietvPtgtttidptssgtitsi 97 
                 +  ++ t+ +++  ++s  ++ a+ s ++++   ++++d dD dd +D++   +  Pt+  ++  t s  +t++
  CCE27960.1  41 IDRSKRTVDSAAVNTTSGDASDAKRSASKISRGENSGSDSDDSDDSDDSDG-ADEYPTSHELVLKTHSRAVTTV 113
                 4444445544444444445566779999**************9*******6.5668888888888888777766 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.13
     DUF3246 132 vvdsdGetvtktvttkapvvtqtqtetevvtitytga 168
                 +++ dG+++t+ v   +      +t+  +  it  g+
  CCE27960.1 191 IMSRDGQILTEFVKGDMYLRDMNNTKGHISEITT-GT 226
                 5556666666666666666666666666666663.22 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.15
     DUF3246  48 ssitvvgtsstgsddddDdddetD 71 
                 ++ +++ ++++ ++  dDddd  D
  CCE27960.1 558 KAWSKTQPKTQYAELSDDDDDGPD 581
                 566777777777777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4058.50
//
Query:       CCE27961.1  [L=440]
Description: related to benzoate 4-monooxygenase cytochrome P450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-68  230.8   0.2    3.2e-68  230.6   0.2    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.6   0.2   1.8e-72   3.2e-68       9     411 ..      47     433 ..      37     433 .. 0.87

  Alignments for each domain:
  == domain 1  score: 230.6 bits;  conditional E-value: 1.8e-72
                 CCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHT CS
        p450   9 lvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptlt 107
                 lv+  +++   ++   + ++l+kkygpi+r+ +++ +v+     e vk+v+  k  + + +++e l++     + ++   +a+ e ++klRr++  ++ 
  CCE27961.1  47 LVFRYQWFY--GKQTFYTHDLHKKYGPIVRVAPNQVAVAD---LETVKSVYTIKETYRKTKFYELLVSR----PIQTVFSTADVELHRKLRRLMASQMS 136
                 555566666..5556668**************99866655...55888888877544444444444443....55555556666*************** PP

                 SHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCC.SC CS
        p450 108 sfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp.llkyl.pt 203
                  + +l s+ + v++ +e  +++++++++ ++++d++++   +++dvig++ Fg++f++le+ k +++++  e++ss+  +++  + l+f+   ky  + 
  CCE27961.1 137 ES-SLkSMLPQVTSHVELAIQRMKEESKDRGVIDVFKWCLFMTTDVIGELSFGESFQMLEKGKKTQYIEDLENVSSVS-ADRITFPLFFHlADKYDkIL 233
                 **.8889*******************************************************************8877.77888888888444443245 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH CS
        p450 204 kllrklkeavkklkdlldklieerretldsa.kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklre 301
                 +l+r   ++ ++l ++ ++ +   +++++s+ ++ +++f+  l +a+  k++  k++ e++ +++ ++++aG+dTt++tl++ +  + k+Pe+ ++l +
  CCE27961.1 234 PLFRSKIAINRRLVEYSRQSLGRYQKQVESDaTSAKYTFVEKLFQAE--KDN--KITFEDILTNAQTFIIAGSDTTATTLTYLIWSICKRPELRDALLK 328
                 78888888889999999998888888888888889***********6..555..6******************************************** PP

                 HHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSC CS
        p450 302 EidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk.dvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrks 399
                 E+++  gd   +t+ dl +lp+ +++++EtLR ++ +p +lpR+v+k   +++gy + +Gt+v   +y++hrdp++f+nP++Fdp+R+ + +      +
  CCE27961.1 329 ELRTLPGD---FTEPDLRELPLFNQTVEETLRVYSSAPASLPRAVPKgGAHVGGYYLSEGTTVAAQAYTMHRDPAIFENPDVFDPQRWANPTR---AMK 421
                 *9999999...89**********************************99******************************************87...68* PP

                 TT--TTEEGGGS CS
        p450 400 faflPFGaGpRn 411
                 +af+PFG G R+
  CCE27961.1 422 EAFMPFGRGSRS 433
                 **********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3067.16
//
Query:       CCE27962.1  [L=408]
Description: probable aspartic proteinase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-71  241.0   2.6    2.3e-71  240.8   2.6    1.0  1  Asp             Eukaryotic aspartyl protease
    2.4e-13   50.7   2.2    4.7e-07   30.2   0.0    3.1  3  TAXi_N          Xylanase inhibitor N-terminal
    0.00032   20.5   0.0    0.00099   18.9   0.0    1.9  2  TAXi_C          Xylanase inhibitor C-terminal
  ------ inclusion threshold ------
      0.014   16.0   0.2       0.82   10.3   0.3    3.0  2  Asp_protease_2  Aspartyl protease


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.8   2.6   5.2e-75   2.3e-71       1     314 [.      98     407 ..      98     408 .] 0.94

  Alignments for each domain:
  == domain 1  score: 240.8 bits;  conditional E-value: 5.2e-75
                 EEEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-E.EEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   1 eYfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstyk.kngkslsisYGdg.svsGflsqdtvkvggltvknqefgeatkep 97 
                 +Y+++++iGtp+q+++++fDTGSsdlWV+s+++    +++ + +y+p +Sst+k  +g +++i+YGdg s+sG +++d v+vg+l+v++q+++ a+k +
  CCE27962.1  98 KYLTPVQIGTPPQTLNLLFDTGSSDLWVFSNDTA-ADEVHDQMLYQPGNSSTAKqLSGLTWQIKYGDGaSSSGNVYKDVVAVGDLKVQEQAVQTAQKVS 195
                 6*******************************98.78999***********99957899**************************************** PP

                 SHHHTTSSSSEEEE-S-GGGSCGG...SCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS.TSSTEEEEEEEEETTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
         Asp  98 gstflaakfdGiLGlgfkeisvee...atpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts.kgywqielesvtvggkt 192
                 + ++ ++ ++G++Gl+f++i+ ++   +++++dn  +++l++ p+f+  l   +++ g++ fG +D +  kG ++y pv++  g+w+++ +++ +g+++
  CCE27962.1 196 EDFTNDTVTSGLMGLAFSSINNVQptqQKTFMDN--AEHLLDAPLFTADLK--HQTDGKYNFGFIDAAAHKGPINYSPVDNsGGFWNWTSTGYAIGENA 290
                 *********************9997767777999..99************5..9**************************96789************99 PP

                 EEEEEEEEEEEETTCSSEEEEHHHHHHHHHHH.TTEEEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESEEECCTSSSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 193 vlcssgcqailDtGTsllalptsivekiakai.gakksesegeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilglvseeegdlwi 290
                 +  ++ +q ++D+GTsl+ lp++iv+++ ka+ ga++++ e  +v++C++  +lpd+ f +g+akit+p   + +++++++  +C+ g+ ++ e+   i
  CCE27962.1 291 F-IKTPIQNMADSGTSLMLLPEEIVHAYYKAVpGAYYDKVEAGFVFECAT--KLPDFIFGVGNAKITIPGAFINYSRSSGT--KCFGGI-QTTENGFII 383
                 9.99***************************945666777899******8..******************99999999765..7*****.99999**** PP

                 EEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 291 LGdvFlrsayvvfdldnnrvglAe 314
                 +Gd+  + a vvfd+++ r+g A+
  CCE27962.1 384 FGDIAFKAALVVFDVGKTRIGWAA 407
                 *********************996 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0     1e-10   4.7e-07       1      54 [.      99     152 ..      99     156 .. 0.95
   2 !   17.3   0.3   9.6e-07    0.0043      81     153 ..     157     225 ..     153     241 .. 0.79
   3 ?    1.5   0.0      0.07   3.1e+02     116     178 .]     333     386 ..     296     386 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1e-10
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykav 54 
                 Yl+ ++iGtppq+l+l++DtGs+ +Wv  +   a   +++ +++p +sst k++
  CCE27962.1  99 YLTPVQIGTPPQTLNLLFDTGSSDLWVFSNDTAADEVHDQMLYQPGNSSTAKQL 152
                 9****************************9999999999***********9987 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 9.6e-07
      TAXi_N  81 yeisygadgssssGvlatdtltlsstdgksvkvpnlvfGCgksnlgglaag..adGilGLGrgklSlvsqlaskg 153
                  +i+yg dg sssG++ +d++++     +  kv++ ++  +++ ++++ ++  ++G++GL+++++  v+ +++k+
  CCE27962.1 157 WQIKYG-DGASSSGNVYKDVVAV-----GDLKVQEQAVQTAQKVSEDFTNDtvTSGLMGLAFSSINNVQPTQQKT 225
                 5799*8.999*************.....667777666666665566665533499**********9999888764 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.07
      TAXi_N 116 lvfGCgksnlgglaagadGilGLGrgklSlvsqlaskgslgnkFsyCLssssssssgvlffGd 178
                 +vf C++    +l+   d i G G++k+ ++  + +    ++  + C+   +++++g+++fGd
  CCE27962.1 333 FVFECAT----KLP---DFIFGVGNAKITIPGAFINY--SRSSGTKCFGGIQTTENGFIIFGD 386
                 5555555....333...34778888888888888755..566667788888999999999997 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.2   5.6e+03      88      88 ..     105     105 ..      60     135 .. 0.53
   2 !   18.9   0.0   2.2e-07   0.00099      97     160 ..     346     406 ..     323     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
                 . CS
      TAXi_C  88 a 88 
                 +
  CCE27962.1 105 I 105
                 2 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 2.2e-07
                 EEESSS-EEEE-GGGGEEE-SSSEEEE-EEE--S--SSSEEE-HHHHBTS-EEEETTTTEEEEE CS
      TAXi_C  97 lvleggaewtisgenllvkveggvvClafvesgvagesavviGglqlednllvFDleksrlgFs 160
                 +    +a++ti+g+ + + ++ g+ C++ +++   +++ +++G + ++  l+vFD+ k+r+g++
  CCE27962.1 346 FGVG-NAKITIPGAFINYSRSSGTKCFGGIQT--TENGFIIFGDIAFKAALVVFDVGKTRIGWA 406
                 4444.78***********************99..9999***********************975 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   0.00018      0.82       4      77 ..     104     192 ..     101     212 .. 0.47
   2 ?    1.8   0.0     0.085   3.8e+02       9      31 ..     295     317 ..     287     327 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
  Asp_protease_2   4 tinG..kpvrfllDTGastt.lispela.....eklglkvreseltvrvsg.......aggevkarlvrldslklggltlknvpalvld 77 
                     +i+   +++++l+DTG+s + + s+++a     +++  ++  s++ +++sg        +g++++  v  d + +g+l+++++++  ++
      CCE27962.1 104 QIGTppQTLNLLFDTGSSDLwVFSNDTAadevhDQMLYQPGNSSTAKQLSGltwqikyGDGASSSGNVYKDVVAVGDLKVQEQAVQTAQ 192
                     555444799*********86255566653333322222222222233333311111112333333333333366666666666555555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.085
  Asp_protease_2   9 pvrfllDTGasttlispelaekl 31 
                     p++ + D+G s +l+++e +++ 
      CCE27962.1 295 PIQNMADSGTSLMLLPEEIVHAY 317
                     778899***********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2997.77
//
Query:       CCE27963.1  [L=489]
Description: related to benzoate 4-monooxygenase cytochrome P450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-72  244.0   0.0    3.5e-72  243.6   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.6   0.0     2e-76   3.5e-72      45     458 ..      77     482 ..      66     486 .. 0.88

  Alignments for each domain:
  == domain 1  score: 243.6 bits;  conditional E-value: 2e-76
                 EEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH..HHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEE CS
        p450  45 pvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang..ekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagesseld 140
                 + v++ + +avk+++  k   +++   +  ++++  +++  + +f++g  + ++klRr+l  ++  + +l ++++ +++ ++  ++++++++++++++d
  CCE27963.1  77 DKVIVADLDAVKSIYTIKE--TYR---KTDFYKLI-TSRPIQTIFSTGdvDLHRKLRRLLASQMSES-SLkTMMPQIKSHVDLAIQRMKEESKARGVID 168
                 4699999********9995..333...44455544.455666666666679****************.8889*************************** PP

                 THHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH..HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCS CS
        p450 141 itellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp..llkylptkllrklkeavkklkdlldklieerretldsakks 237
                 ++++   +++d ig++ Fg++f++le+ k +++++  e++ss+  + +v + ++f+  +    + +l++   +++++lk++ ++ i   +++++++   
  CCE27963.1 169 VFKWSLFMTTDLIGELSFGESFQMLEKGKKNQYIEDLEDISSIA-AYRVTFPFFFWlaDRYSNILPLFKGKISITRRLKEYSRQSIGRYQKKVEEN--- 263
                 *****************************************999.6677888888843333456799999999******************99999... PP

                 SCSHHHHHHHHC.TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHS CS
        p450 238 rrdfldalllak.kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlh 335
                 + +  + ++ ++ +++k++ k+   ++ +++ +l++aG+dTt+stl++ +    k+P++ ++l +E+++  g+   +t++dl +lp+ + +i+EtLR +
  CCE27963.1 264 PANAKQTFVAKMfQAEKDD-KIAFGDILTNAQTLIVAGSDTTASTLTYLIWSVCKRPDLRDALLKELRTLPGE---FTEADLRDLPLFNRTIEETLRVY 358
                 5555555555555445776.8*********************************************8888888...9********************** PP

                 CSSTTEEEEESSS.CEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHE CS
        p450 336 pvvplllpRevtk.dvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnF 433
                 + vp llpR+v++   +i+gy + +Gt+v   +y++hrdp++f+nP++Fdp+R+ + ++     ++a++PFG G R CiG +lA+ el+l+ a++L +F
  CCE27963.1 359 SSVPALLPRAVPQgGAHIGGYYLSEGTTVAAQAYTMHRDPAIFENPDVFDPQRWVNPTK---AMKEASMPFGRGSRVCIGIHLAYIELRLAAARFLLEF 454
                 *************99******************************************87...689********************************** PP

                 ...EEEESTSTSGGEEESSCSSEEESSS CS
        p450 434 ...evelqpetdpppileksglllppkp 458
                    +v+  ++ + ++++ +  +l+ pk+
  CCE27963.1 455 pnaRVSAKEGMSDRDMDSTVYFLMSPKG 482
                 7666777777777777777677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3664.97
//
Query:       CCE27964.1  [L=419]
Description: probable aspartic proteinase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-70  236.3   0.3    6.9e-70  236.0   0.3    1.1  1  Asp       Eukaryotic aspartyl protease
      8e-11   42.5   1.0    2.2e-06   28.0   0.0    3.1  4  TAXi_N    Xylanase inhibitor N-terminal
  ------ inclusion threshold ------
      0.039   13.7   0.0       0.16   11.7   0.0    2.0  2  TAXi_C    Xylanase inhibitor C-terminal
       0.11   12.6   0.0       0.21   11.6   0.0    1.4  1  OmdA      Bacteriocin-protection, YdeI or OmpD-Associated


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.0   0.3   1.5e-73   6.9e-70       1     314 [.     106     416 ..     106     417 .. 0.96

  Alignments for each domain:
  == domain 1  score: 236.0 bits;  conditional E-value: 1.5e-73
                 EEEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-E.EEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   1 eYfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstyk.kngkslsisYGdg.svsGflsqdtvkvggltvknqefgeatkep 97 
                 eY+++++iGtp+q++++ fDTGSsdlWV+s+++    +++ + +y+p kSst++  +g ++s+ YGd  ++sG +++d v+vggltv++q+++ a+k +
  CCE27964.1 106 EYLTPVQIGTPPQTLNLQFDTGSSDLWVFSNETA-ADEVNGQALYEPGKSSTAEfLSGLAWSLVYGDRsNSSGNVFRDVVTVGGLTVQKQAVETAKKVS 203
                 6*******************************99.899****************89999*********99***************************** PP

                 SHHHTTSSSSEEEE-S-GGGSCGG...SCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS.TSSTEEEEEEEEETTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
         Asp  98 gstflaakfdGiLGlgfkeisvee...atpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts.kgywqielesvtvggkt 192
                  +++ ++  +G+LGl+f++i+ ++   ++++fdn  +++ ++ p+f+  l    ++ g++ fG++De+  +G +ty p++s kg+w+++ +++ vg + 
  CCE27964.1 204 PQFTNDTLSSGLLGLAFDKINKVKpvqQKTFFDN--AKESLDAPLFTADLK--YHADGKYNFGYIDEKAHNGPITYSPIDStKGFWNWTSTGYAVGAND 298
                 *********************9998878888***..6778**********5..99*************************999***************9 PP

                 EEEEEEEEEEEETTCSSEEEEHHHHHHHHHHH.TTEEEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESEEECCTSSSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 193 vlcssgcqailDtGTsllalptsivekiakai.gakksesegeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilglvseeegdlwi 290
                 + +++ +  i+DtG sl+ lp++iv ++ +a+ ga++++ +g +++dCd   +lp+++f +g+a+it+p++ + + + +++  +C+ gl+s++    +i
  CCE27964.1 299 F-TETPIPNIADTGSSLMLLPDEIVGAYYSAVdGARYDMFQGGFIFDCDV--TLPNFTFGVGNARITIPAKFIKYAPATGN--ECYGGLQSSSMIGFNI 392
                 9.9****************************9446678889********7..******************99999999865..7*************** PP

                 EEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 291 LGdvFlrsayvvfdldnnrvglAe 314
                 +Gd+ l+ a vvfd +n+r+g A+
  CCE27964.1 393 FGDIALKAALVVFDNGNSRIGWAA 416
                 *********************996 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0     5e-10   2.2e-06       1      52 [.     107     158 ..     107     162 .. 0.94
   2 !   11.6   0.1   5.3e-05      0.24      84     153 ..     168     233 ..     163     239 .. 0.75
   3 ?   -1.9   0.0      0.76   3.4e+03      13      26 ..     303     316 ..     300     319 .. 0.80
   4 ?   -3.3   0.0       2.1   9.3e+03     111     122 ..     347     358 ..     337     363 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 5e-10
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstyk 52 
                 Yl+ ++iGtppq+l+l +DtGs+ +Wv  +   a   + + +++p ksst +
  CCE27964.1 107 YLTPVQIGTPPQTLNLQFDTGSSDLWVFSNETAADEVNGQALYEPGKSSTAE 158
                 9****************************9999999999999****999975 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.3e-05
      TAXi_N  84 sygadgssssGvlatdtltlsstdgksvkvpnlvfGCgksnlgglaag..adGilGLGrgklSlvsqlaskg 153
                  yg d+s+ssG++ +d++t+     ++ +v++ ++  +k+ + ++ ++  ++G+lGL++ k+  v+ +++k+
  CCE27964.1 168 VYG-DRSNSSGNVFRDVVTV-----GGLTVQKQAVETAKKVSPQFTNDtlSSGLLGLAFDKINKVKPVQQKT 233
                 687.999*************.....666777666666665555555532479*********99888877765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.76
      TAXi_N  13 plklvvDtGsdltW 26 
                 p+  ++DtGs+l+ 
  CCE27964.1 303 PIPNIADTGSSLML 316
                 567799****9975 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 2.1
      TAXi_N 111 vkvpnlvfGCgk 122
                 v++pn++fG g+
  CCE27964.1 347 VTLPNFTFGVGN 358
                 78999***9986 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.41   1.8e+03      92     109 ..     117     135 ..      54     147 .. 0.72
   2 ?   11.7   0.0   3.6e-05      0.16      90     160 ..     347     415 ..     340     416 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.41
                 ---EEEEESSS-.EEEE-G CS
      TAXi_C  92 vPtitlvlegga.ewtisg 109
                   t++l+++ g+ ++++++
  CCE27964.1 117 PQTLNLQFDTGSsDLWVFS 135
                 4466666666555444443 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.6e-05
                 S----EEEEESSS-EEEE-GGGGEEE-SSSEEEE-EEE--S--SSSEEE-HHHHBTS-EEEETTTTEEEEE CS
      TAXi_C  90 pavPtitlvleggaewtisgenllvkveggvvClafvesgvagesavviGglqlednllvFDleksrlgFs 160
                 +++P++t+    +a++ti+++ + +    g  C + ++s ++  + +++G + l+  l+vFD  +sr+g++
  CCE27964.1 347 VTLPNFTFGVG-NARITIPAKFIKYAPATGNECYGGLQS-SSMIGFNIFGDIALKAALVVFDNGNSRIGWA 415
                 56788888887.89********99999999*******99.889999**********************975 PP

>> OmdA  Bacteriocin-protection, YdeI or OmpD-Associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.8e-05      0.21       3      32 ..      62      92 ..      61      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.8e-05
        OmdA  3 evPedlaaaLda.dpaakaaFealtpsyrre 32
                +vPed+aaaL++ +++++  +++  +s++r+
  CCE27964.1 62 TVPEDVAAALERrEKKLRHKYQKNHKSHKRS 92
                69********773668************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3059.78
//
Query:       CCE27965.1  [L=338]
Description: uncharacterized protein CPUR_01439 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-23   80.7   1.4    1.2e-22   79.8   1.4    1.4  1  BCNT      Bucentaur or craniofacial development


Domain annotation for each model (and alignments):
>> BCNT  Bucentaur or craniofacial development
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   1.4   6.5e-27   1.2e-22       5      74 ..     265     334 ..     262     335 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 6.5e-27
        BCNT   5 ddilaeitakkkKlstleKSklDWeaykdkegikeeLeahnkgkegYlerqdFLqRvddrkeekereaRl 74 
                 ++++a  +a++kKl+t+eKS++DW+ y+dkeg+++eL  ++k+k++Y  rqdFL+R+++ +e+ +r+aR+
  CCE27965.1 265 ARMQAGREAQAKKLTTVEKSRMDWAGYVDKEGLQDELVLASKSKDSYAARQDFLARSEAIREDDARKARQ 334
                 67777789*************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2614.85
//
Query:       CCE27966.1  [L=316]
Description: uncharacterized protein CPUR_01440 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-08   32.5   4.5    9.2e-08   32.5   4.5    2.8  2  DUF4602         Domain of unknown function (DUF4602)
  ------ inclusion threshold ------
       0.13   11.8   4.5       0.17   11.4   4.5    1.2  1  Lin-8           Ras-mediated vulval-induction antagonist


Domain annotation for each model (and alignments):
>> DUF4602  Domain of unknown function (DUF4602)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   2.4     0.011        97      25      58 ..     116     166 ..      24     174 .. 0.69
   2 !   32.5   4.5     1e-11   9.2e-08      63     133 ..     196     268 ..     184     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.011
     DUF4602  25 k.................ksrkkkkaeeeeeenlrqefdLkkarkevhrfg 58 
                 +                 + ++     e++   l+q+++L +++ e+h+++
  CCE27966.1 116 RppdpttktpttqpsslpSNKSALPLPEDAPSLLKQDLELRRLLSESHLLN 166
                 144444444444444443222222333444566899************998 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 1e-11
     DUF4602  63 skkerkkaekerlikLGAKpp..knpyinykelkgekkkakareeeekaeareagvvtkkkkkkkkkkkrkkk 133
                 ++ +r+k+ + r+++LGAK     ++++++  +kg+  +++are ++++eare+gv+ +k+ +    +k++++
  CCE27966.1 196 EGRTRRKTTDLRVQALGAKTSihTQEKMPMQMRKGMLAAQQAREVKRRREARENGVILEKDVQMRGGDKKRRR 268
                 4789***************98778999*********************************9988777777654 PP

>> Lin-8  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.5   1.9e-05      0.17     122     253 ..      23     189 ..      21     246 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.9e-05
       Lin-8 122 kwEael............Rkeaitgeaqkaddddiiyegyleaeegedteeeekveveeeaeeqgsmdlketeaeevkeeqmeqsfe............ 196
                 ++Ea++            R+e++t       +dd   +g+ e+e +++  ++e+ ++e+ ++++++ +  ++++ ev ++++ q+ +            
  CCE27966.1  23 HFEARFeplagtasqhtdRDEPQT------GEDDSEWDGLSEGEANDQGGDNEEGSSEDDSQDEDDWE--SSKV-EVVDYSRPQAPKepamtkrelkaf 112
                 666666666666444444444444......66777799999999997776666665555555555554..4444.444455555555122222223322 PP

       Lin-8 197 ...eeeeakleeptvniveeeaaaravdqsfgsaeqql..........................................essssrtssassssssaap 250
                                    + + ++ + q+++                                                        s+ss+s+s ++
  CCE27966.1 113 mssR-------------PPDPTTKTPTTQPSSL----PsnksalplpedapsllkqdlelrrllseshllnphargakslS-------SVSSPSTS-SS 186
                 2221.............2222222222332222....02233555666667777777888888888888877544432221.......22222222.22 PP

       Lin-8 251 sst 253
                 s+t
  CCE27966.1 187 STT 189
                 222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1012  (0.0564449); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2527.33
//
Query:       CCE27967.1  [L=692]
Description: transcription factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-56  188.8   0.1      5e-56  187.8   0.1    1.5  1  STE            STE like transcription factor
      2e-10   40.5  12.7    1.1e-05   25.6   2.0    2.9  2  zf-C2H2        Zinc finger, C2H2 type
      1e-07   32.1  11.0    0.00037   21.1   1.6    3.0  2  zf-C2H2_4      C2H2-type zinc finger
      6e-07   29.6   4.9      6e-07   29.6   4.9    3.2  3  zf-H2C2_2      Zinc-finger double domain
    0.00017   21.5  10.7     0.0013   18.6   1.3    3.5  3  zf-C2H2_6      C2H2-type zinc finger
    0.00071   19.8   1.0      0.015   15.5   0.4    2.5  2  zf-C2H2_jaz    Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
      0.089   13.1   0.1       0.21   11.9   0.1    1.6  1  zinc_ribbon_9  zinc-ribbon
       0.09   12.7   2.1       0.68    9.9   2.1    2.4  1  zf-FPG_IleRS   Zinc finger found in FPG and IleRS
       0.13   12.6   4.0       0.33   11.3   4.0    1.7  1  zf-Di19        Drought induced 19 protein (Di19), zinc-bindin
       0.22   10.8   2.4       0.36   10.1   2.4    1.2  1  NOA36          NOA36 protein
        2.9    7.9   5.4        3.8    7.5   0.4    2.4  2  zf-C2HC_2      zinc-finger of a C2HC-type


Domain annotation for each model (and alignments):
>> STE  STE like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.8   0.1     3e-59     5e-56       1     110 []      48     156 ..      48     156 .. 0.99

  Alignments for each domain:
  == domain 1  score: 187.8 bits;  conditional E-value: 3e-59
         STE   1 qvirrykleeeegfiscvlwknlfyitgtdivkilvykleafGrkitdkkkfeeGifsdlrnlkigvdavleepksefldllyknkclrtqkkqkvfyw 99 
                 q irr+ l++ e ++scvlw+nlf+i+gtdiv++l+++++afGr ++++kkfeeGifsdlrnlk g+da+leepks fld+lykn+c+rtqkkqkvfyw
  CCE27967.1  48 QYIRRFLLPTGE-YVSCVLWNNLFHISGTDIVRCLSFRFQAFGRPVKNSKKFEEGIFSDLRNLKSGTDASLEEPKSAFLDFLYKNNCIRTQKKQKVFYW 145
                 679********9.************************************************************************************** PP

         STE 100 fsvphdklfld 110
                 +svphd+lfld
  CCE27967.1 146 YSVPHDRLFLD 156
                 *********98 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   3.2   5.9e-07   0.00095       1      23 []     545     569 ..     545     569 .. 0.96
   2 !   25.6   2.0   6.9e-09   1.1e-05       1      23 []     575     597 ..     575     597 .. 0.98

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.9e-07
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 + Cp   Cg+ Fkr ++LkrH rtH
  CCE27967.1 545 HSCPipTCGRLFKRLEHLKRHVRTH 569
                 689999******************9 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 6.9e-09
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y Cp+C+k F+r++nL +H rtH
  CCE27967.1 575 YICPHCSKAFSRSDNLAQHKRTH 597
                 89********************9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.3   1.9e-05     0.031       2      23 ..     546     569 ..     545     570 .. 0.94
   2 !   21.1   1.6   2.3e-07   0.00037       1      23 [.     575     597 ..     575     598 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-05
   zf-C2H2_4   2 kCpi..CgksFsskkaLlrHlkth 23 
                  Cpi  Cg+ F++ ++L+rH++th
  CCE27967.1 546 SCPIptCGRLFKRLEHLKRHVRTH 569
                 799999*****************9 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 2.3e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 ++Cp+C+k Fs++++L +H +th
  CCE27967.1 575 YICPHCSKAFSRSDNLAQHKRTH 597
                 89********************9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.4       1.5   2.5e+03      13      26 .]     543     558 ..     540     558 .. 0.81
   2 !   29.6   4.9   3.7e-10     6e-07       1      25 [.     561     585 ..     561     586 .. 0.96
   3 ?    1.2   0.1      0.36   5.9e+02       1      12 [.     589     600 ..     589     604 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.5
   zf-H2C2_2  13 kpyeCp..lCdkaFkt 26 
                 k + Cp   C+  Fk+
  CCE27967.1 543 KSHSCPipTCGRLFKR 558
                 568899999*999985 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 3.7e-10
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 +L+rH r+Ht+ekpy Cp C+kaF+
  CCE27967.1 561 HLKRHVRTHTQEKPYICPHCSKAFS 585
                 79**********************8 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.36
   zf-H2C2_2   1 nLrrHirkHtge 12 
                 nL +H r+H  e
  CCE27967.1 589 NLAQHKRTHSRE 600
                 7999*****865 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.8      0.13   2.2e+02       6      25 ..     551     570 ..     545     572 .. 0.87
   2 !   18.6   1.3   8.1e-07    0.0013       2      26 ..     575     599 ..     575     600 .. 0.95
   3 ?    5.2   0.0     0.014        22      10      19 ..     667     676 ..     665     682 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.13
   zf-C2H2_6   6 vCsksFpslqaLggHkksHr 25 
                 +C++ F+ l  L  H ++H 
  CCE27967.1 551 TCGRLFKRLEHLKRHVRTHT 570
                 8********99999999995 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 8.1e-07
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksHrk 26 
                 ++C+ Csk F+  ++L  Hk++H +
  CCE27967.1 575 YICPHCSKAFSRSDNLAQHKRTHSR 599
                 89*********************86 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.014
   zf-C2H2_6  10 sFpslqaLgg 19 
                 sF+slq+Lg+
  CCE27967.1 667 SFNSLQNLGM 676
                 9*******96 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.16   2.6e+02       6      24 ..     551     569 ..     550     569 .. 0.91
   2 !   15.5   0.4   9.4e-06     0.015       2      24 ..     575     597 ..     574     598 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.16
                  TTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   6 lCdKyFksenaldnHlkSK 24 
                  +C + Fk  + l+ H++++
   CCE27967.1 551 TCGRLFKRLEHLKRHVRTH 569
                  799************9986 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 9.4e-06
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  + C++C+K F+ + +l +H++++
   CCE27967.1 575 YICPHCSKAFSRSDNLAQHKRTH 597
                  89******************997 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00013      0.21      10      31 ..     564     584 ..     563     584 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
  zinc_ribbon_9  10 rfVsvspdedsdvlCPhCgggF 31 
                    r+V+ ++ e + + CPhC   F
     CCE27967.1 564 RHVRTHTQEKPYI-CPHCSKAF 584
                    8999888877778.****9988 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.1   0.00042      0.68       5      29 ..     550     582 ..     547     583 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00042
                   TTT--BBEEEEC........TTEEEEE-TTTT. CS
  zf-FPG_IleRS   5 pRCwryiervgq........agrstyfCprCqk 29 
                   p+C+r ++r ++         ++ +y+Cp+C k
    CCE27967.1 550 PTCGRLFKRLEHlkrhvrthTQEKPYICPHCSK 582
                   5577777777777777777899*********76 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.0    0.0002      0.33       6      49 ..     550     594 ..     543     599 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
     zf-Di19   6 PyCgk.eltvkeLveHvedeHrveskevvCPvCaekvtk..dlvaHl 49 
                 P Cg+     + L +Hv + H  ++k+++CP C++  ++  +l++H 
  CCE27967.1 550 PTCGRlFKRLEHLKRHVRT-H-TQEKPYICPHCSKAFSRsdNLAQHK 594
                 5699944566889999999.5.566899*****98855333999995 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.4   0.00022      0.36     196     274 ..     560     641 ..     542     669 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
       NOA36 196 dhvrrkgfkyeknkaipcpkcgyetqetkdlslstrslkf..grqk.qadgsddddddeedsdydaylkalasgddeddegd 274
                 +h++r++  + ++k+  cp+c+   +++ +l+   r+++   g +   + ++++d++++++ + +   +a  s+d  + +++
  CCE27967.1 560 EHLKRHVRTHTQEKPYICPHCSKAFSRSDNLAQHKRTHSRedGGEGfSNMSAEEDEEYSGEDQLACLEEASPSSDTAYATSS 641
                 89*******************************9999875223333033445566666666666666666555544443333 PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.6      0.11   1.7e+02       6      21 ..     550     566 ..     547     568 .. 0.77
   2 ?    7.5   0.4    0.0024       3.8       4      22 ..     576     595 ..     575     596 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
   zf-C2HC_2   6 pkCgRsF.npdrlekHe 21 
                 p CgR F   + l +H+
  CCE27967.1 550 PTCGRLFkRLEHLKRHV 566
                 79*****6666666665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0024
   zf-C2HC_2   4 pCpkCgRsF.npdrlekHep 22 
                  Cp+C+  F  +d l+ H++
  CCE27967.1 576 ICPHCSKAFsRSDNLAQHKR 595
                 5****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4850.17
//
Query:       CCE27968.1  [L=99]
Description: uncharacterized protein CPUR_01442 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       176  (0.0098165); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 751.51
//
Query:       CCE27969.1  [L=608]
Description: probable coronin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-34  116.5   0.1    7.8e-34  115.4   0.1    1.6  1  DUF1899      Domain of unknown function (DUF1899)
    2.4e-19   68.9   0.1    4.6e-19   68.0   0.1    1.5  1  WD40_4       Type of WD40 repeat
    2.3e-17   63.0   3.0    0.00016   22.4   0.1    4.5  4  WD40         WD domain, G-beta repeat
    2.2e-08   34.3   0.0    0.00088   19.5   0.2    3.9  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0014   17.4   0.6       0.38    9.3   0.3    2.2  2  Nup160       Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.035   13.1   0.0          1    8.2   0.1    2.4  2  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
        6.2    7.5   5.6        1.4    9.6   1.3    2.1  2  SlyX         SlyX


Domain annotation for each model (and alignments):
>> DUF1899  Domain of unknown function (DUF1899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4   0.1     3e-37   7.8e-34       1      66 []       4      69 ..       4      69 .. 0.99

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 3e-37
     DUF1899  1 rfvrsSkfRhvfgkpakkeecydnirvsknawdsnlikaNpkflAvnwessGGGafaVlplnktGk 66
                rfvr+Sk+Rhvfgk ++ke+cydn+ +s+nawd+nl+k+Np++l+vnw++sGGGafaV+pln++Gk
  CCE27969.1  4 RFVRASKYRHVFGKSTRKEFCYDNLHISRNAWDTNLVKVNPEYLSVNWDASGGGAFAVIPLNEKGK 69
                79***************************************************************8 PP

>> WD40_4  Type of WD40 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.1   1.8e-22   4.6e-19       1      42 [.     347     387 ..     347     389 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 1.8e-22
      WD40_4   1 iepisftVPRkskeeFqdDlyPdtagtepaltAeeWlsGknk 42 
                 iepisftVPR++ e+Fq+D++P+++gt+pa+ A+eWl+Gk++
  CCE27969.1 347 IEPISFTVPRRA-ESFQADIFPPAPGTKPAVGAQEWLNGKTG 387
                 8***********.***************************87 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     6e-06     0.015       7      37 ..      77     109 ..      72     110 .. 0.85
   2 !   18.9   0.0   7.9e-07     0.002       3      38 .]     129     166 ..     127     166 .. 0.83
   3 !   22.4   0.1   6.1e-08   0.00016      10      38 .]     178     207 ..     170     207 .. 0.89
   4 ?    2.7   0.0      0.11   2.7e+02      12      36 ..     269     297 ..     259     299 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6e-06
                 EESS.SSEEEEEEETTSSEEE.EEETTSEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawla.sGsdDgtvriW 37 
                 ++GH   v + +++p ++ ++ s+s+Dg+v +W
  CCE27969.1  77 FRGHtATVLDTDWNPFNDRVIaSASEDGKVFLW 109
                 89**777************762679******** PP

  == domain 2  score: 18.9 bits;  conditional E-value: 7.9e-07
                 EEEEEESSSS.EEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawla.sGsdDgtvriWd 38 
                 ++ +l GHs  v  + f+p+ + ++ s+s D tv+iWd
  CCE27969.1 129 PVSKLAGHSRkVGQVLFNPSAQNILaSASGDFTVKIWD 166
                 678899**557*9999*******7525667*******9 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 6.1e-08
                 SSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  10 Hss.vtslafspdgawlasGsdDgtvriWd 38 
                 H++ v sl+++ +g++l++ s+D+++r+Wd
  CCE27969.1 178 HTDiVQSLSWNASGTMLVTTSRDKKIRVWD 207
                 85647************************9 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.11
                 SEEEEE...EETTSSEE.EEE.ETTSEEEE CS
        WD40  12 svtsla...fspdgawl.asG.sdDgtvri 36 
                 s+++++   +++ ++ l ++G + Dg++r 
  CCE27969.1 269 SISGVCmpfWDDGSNCLyLAGkG-DGNIRY 297
                 47778888888888887448*88.****96 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0026       6.6      39      75 ..      82     119 ..      76     132 .. 0.85
   2 ?    3.1   0.0     0.046   1.2e+02      37      71 ..     136     171 ..     125     179 .. 0.83
   3 !   19.5   0.2   3.4e-07   0.00088      35      83 ..     176     224 ..     162     233 .. 0.80
   4 ?   -1.0   0.0      0.88   2.3e+03      55      78 ..     288     311 ..     277     322 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0026
  ANAPC4_WD40  39 sevrsLaWkp.dgklLavaysdgevrlldaesgkvvhs 75 
                   +v +  W+p +++++a a +dg+v l ++ +g ++h+
   CCE27969.1  82 ATVLDTDWNPfNDRVIASASEDGKVFLWEVPEGFTLHT 119
                  5677778997699*******************999986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.046
  ANAPC4_WD40  37 edsevrsLaWkpd.gklLavaysdgevrlldaesgk 71 
                  ++++v ++ ++p+  ++La a  d +v++ d+++g+
   CCE27969.1 136 HSRKVGQVLFNPSaQNILASASGDFTVKIWDISTGQ 171
                  66788888888862679***************9997 PP

  == domain 3  score: 19.5 bits;  conditional E-value: 3.4e-07
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkseka 83 
                   k+   v+sL+W+ +g++L+    d ++r+ d+ +++ vh  + +s  +
   CCE27969.1 176 LKHTDIVQSLSWNASGTMLVTTSRDKKIRVWDVRQERAVHDAPGHSGAK 224
                  4677789*********************************999888765 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.88
  ANAPC4_WD40  55 vaysdgevrlldaesgkvvhslsv 78 
                   +  dg++r ++ e+ k    +++
   CCE27969.1 288 AGKGDGNIRYYEYENDKFEFLSEY 311
                  57789******9999987655555 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0013       3.4     229     251 ..     149     171 ..     131     191 .. 0.86
   2 !    9.3   0.3   0.00015      0.38     229     252 ..     190     213 ..     176     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0013
                 TTTEEEEEETT-EEEEEETTTTE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgk 251
                 +q++l+++s d ++++W+++tg+
  CCE27969.1 149 AQNILASASGDFTVKIWDISTGQ 171
                 79*******************98 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00015
                 TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkc 252
                   t+l++ srd+k+rvW+++  + 
  CCE27969.1 190 SGTMLVTTSRDKKIRVWDVRQERA 213
                 469****************98766 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.035        90      59      96 ..      75     112 ..      47     140 .. 0.86
   2 ?    8.2   0.1   0.00041         1     182     251 ..     174     238 ..     151     249 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.035
    Ge1_WD40  59 aLlkglkgevldlafahvsskillavdekgslfvykve 96 
                  L +g +++vld  +   +++++++  e g++f+++v 
  CCE27969.1  75 PLFRGHTATVLDTDWNPFNDRVIASASEDGKVFLWEVP 112
                 57888889999999999999999999999999999885 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00041
    Ge1_WD40 182 lkieehsliveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnhkees 251
                 l ++++  + + ++ + Gt l t+s d +++ + v     +++r +h+   h G + s  +++ +h++ +
  CCE27969.1 174 LALKHTDIVQSLSWNASGTMLVTTSRDKKIRVWDV-----RQERAVHDAPGHSGAKNSRAVWMGEHNRFA 238
                 566777778888999****************9987.....678999999999999999998888888765 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2       1.5   3.9e+03      36      59 ..     463     486 ..     459     490 .. 0.75
   2 ?    9.6   1.3   0.00055       1.4      15      51 ..     552     588 ..     545     603 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.5
                 HHHHHHHHHHT-XXXXXXXXXXXX CS
        SlyX  36 lqrqlrllaerlkeleessgasea 59 
                 ++  ++++a++ ++ ee++++++ 
  CCE27969.1 463 QKSSIAAMANKYQDNEEADEEEDV 486
                 566788999999999999876654 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00055
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXX CS
        SlyX  15 qedtieeLndvvaeqqqqidrlqrqlrllaerlkele 51 
                   + +e+  +++a q+ +id+l  +++ l++r ++  
  CCE27969.1 552 IKQILEQQARIMASQNTKIDKLVGEVESLKKRANTSG 588
                 568899************************9986544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4169.89
//
Query:       CCE27970.1  [L=1394]
Description: related to budding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-13   51.6   0.0    3.3e-13   50.3   0.0    1.8  1  Anillin         Cell division protein anillin
    2.4e-08   34.4   0.0    6.1e-08   33.1   0.0    1.8  1  PH              PH domain


Domain annotation for each model (and alignments):
>> Anillin  Cell division protein anillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   3.7e-17   3.3e-13       4     141 .]    1073    1198 ..    1070    1198 .. 0.92

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 3.7e-17
     Anillin    4 kvtisdirlpLkkkdvesfknkgeseerfavfcllki.gteivatdlvstvdrt............egtdlcFedpivlsnvppdFeidvevYslrv 87  
                  ++t+s++++++kk++++++++k+e+  r+   +l+++ ++ + a +l+s++ +             e++++cF++p++          +++++++++
  CCE27970.1 1073 TSTFSRVFASPKKRREMEQRQKDEE--RQQSEALARQrSRAPSAYELLSHLTADdgsfgrsyvclkEHEHRCFGRPYMA---------EIACFNEWA 1158
                  69*********************99..4455778888799**********99999************************.........********* PP

     Anillin   88 leedlslsstprklatklsskskslsrspgkklaargskFkllGsltltlssvg 141 
                  +ee+ ++ss ++k  t  +    +++r+p          +k+ G+l+++l++v+
  CCE27970.1 1159 WEEASFASSVKSKRGTAAAG---VVRRAP----------YKI-GKLEVQLLFVP 1198
                  ****9999988888888887...******..........***.*******9985 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   6.8e-12   6.1e-08       3     103 ..    1230    1346 ..    1228    1348 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 6.8e-12
                  EEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC.......................TT.SSSSTSEEEEEES CS
          PH    3 keGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevva.......................te.dpkrkfcfelriv 75  
                   eG L+++g++    w++r+f L + +l  y +       +p+ +i+l n++   ++                        +e ++  +  f++r++
  CCE27970.1 1230 FEGHLSQQGGDCP-YWRRRYFKLVGAKLTAYHEV----TRQPRATINLANAKRLIDDRraltekettgrggrrrrsafaedEEgYMFVEEGFRIRFN 1321
                  69***********.********************....****************998899*****98888888887777663336666777777999 PP

                  TSSSTEEEEEEESSHHHHHHHHHHHHHH CS
          PH   76 erngsrtyllqasseeerkeWikaiqsa 103 
                    ng + + ++a+++e++++W+k ++++
  CCE27970.1 1322 --NG-EMIDFYADTAEDKEAWMKILSDV 1346
                  ..99.******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.47
# Mc/sec: 8865.87
//
Query:       CCE27971.1  [L=208]
Description: probable 5` Pro-FAR isomerase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-27   96.8   0.0    1.6e-27   96.5   0.0    1.1  1  His_biosynth    Histidine biosynthesis protein
  ------ inclusion threshold ------
      0.044   13.2   0.0      0.067   12.6   0.0    1.2  1  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   1.8e-31   1.6e-27      69     223 ..      14     179 ..       4     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 1.8e-31
                   HHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THH....HHHHHHHHC..GGGEEEEEEEEE.C...EEEEETTTTEEEEEEHHHHHHH CS
  His_biosynth  69 aeevfipvqvGGGIrsledveelleagadkviigtaavknpel....ikelaekfg..sqkivvaiDarr.g...ykvaikgwreetgldavelakk 155
                   +++   ++qvGGGI++ + ++e+l+aga+kvii++  + +  +    ++ ++e+ g  ++k+vv + +rr g   + va+++w+  t++++     +
    CCE27971.1  14 LSAWPGHLQVGGGINDKN-AKEWLDAGASKVIITSYLFPEGRFsqsrLDAVLEALGgdKSKLVVDLSCRRrGddsWFVAMDKWQTLTDMQVNRESIQ 109
                   45555679********99.*****************87654441112677777776224689********63788********************** PP

                   HHHTT-SEEEEEETTTTTTSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHH..HTTCSEEEESHHH CS
  His_biosynth 156 leelgageilltdidrdGtlsGpdleltkelaeavkipviasGGvgsledlkelk..segvdavivgsal 223
                   + e  ++e+l++  d++G + G+d +l+++lae+++ipv+++GG ++l dl+ +k  s g+ ++ +gsal
    CCE27971.1 110 ALEPYCSEFLIHAADNEGLQRGIDEKLVERLAEWCSIPVTYAGGGRHLGDLDLVKklSGGKVDLTIGSAL 179
                   ******************************************************9988899*******98 PP

>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.4e-06     0.067     168     198 .]      20      50 ..       9      50 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.4e-06
                     EEEEESS--TTTCHHHHHHT--EEEESHHHH CS
  Ribul_P_3_epim 168 kievDGGvkldnieqiaeagadvlVagsavf 198
                     +++v GG++++n+++  +aga  +++ s++f
      CCE27971.1  20 HLQVGGGINDKNAKEWLDAGASKVIITSYLF 50 
                     6899************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1591.06
//
Query:       CCE27972.1  [L=504]
Description: related to thiamine-phosphate diphosphorylase / hydroxyethylthiazole kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-76  256.0   3.0    5.4e-76  255.2   3.0    1.4  1  HK            Hydroxyethylthiazole kinase family
      5e-57  192.1   1.2    9.3e-57  191.3   1.2    1.5  1  TMP-TENI      Thiamine monophosphate synthase
    7.4e-06   25.6   1.1    1.7e-05   24.4   0.9    1.8  1  Carb_kinase   Carbohydrate kinase
     0.0036   16.7   0.4      0.008   15.6   0.3    1.7  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
       0.07   12.4   0.2       0.14   11.4   0.2    1.4  1  DUF5614       Family of unknown function (DUF5614)


Domain annotation for each model (and alignments):
>> HK  Hydroxyethylthiazole kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.2   3.0   1.5e-79   5.4e-76       4     244 ..     233     480 ..     230     482 .. 0.92

  Alignments for each domain:
  == domain 1  score: 255.2 bits;  conditional E-value: 1.5e-79
                 HHHH--EEEEE--TTTHHHHHHHHHHHT-EEEE--STTTHHHHHHTSS.EEEEE-TT--HHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHH CS
          HK   4 lreksPlvhhiTNkVaqnfsANvllAlgaSPimseaeeEvselakian.aLllNiGtleekaiealkaAvksakevnrPvvlDPVgvgAtelRrelale 101
                 + +k+Pl h++TN V+qnf+ANv l +gaSPim++  eE+++la++ + aL+lN+Gt+++  i+ +++A k++++++rPvv+DPVg+gAt++Rr+ +++
  CCE27972.1 233 VGRKTPLSHNMTNLVVQNFAANVALSIGASPIMANYAEEAADLANLGGgALVLNMGTVTPDGIKNYIQALKAYNAAKRPVVFDPVGAGATSVRRSATQT 331
                 56899****************************************97527************************************************* PP

                 HHHHS--SEEEEEHHHHHHHHTSSCCSCSSSSSS-SHH..H.HHHHHHHHHHHTSEEEEESSSEEEEESSEEEEEE-S-GGGGGSTTHHHHHHHHHHHH CS
          HK 102 llkevklavikGNasEilslaglelkvkGvDskeaata..a.vaavqkvAqklrvvvvvtGevDvvsdgkkvyklknGtellgkitasGCllgsvvaaf 197
                 ll+++ + +ikGN++Ei ++ g +++ +GvDs+  + +  +  + vq++A+++++vv++tG +D++sdg++++ + nG+ellg +t++GC+lg++v+a+
  CCE27972.1 332 LLSSGSFTIIKGNQAEIQTVYGATVTQRGVDSSGPSLSiaQrATLVQSLARQRHCVVLLTGPTDLISDGRRTLRVDNGHELLGTVTGTGCTLGTAVSAM 430
                 ********************************98887753247899***********************************************999888 PP

                 HTTB.SSHHHHHHHHHHHHHHHH.HHHHHHHTT..HHHHHHHHHHHHH-- CS
          HK 198 lavk.kdkllaaveavllykvAgkeaaarsegs..gsFqvelldalsqlt 244
                 +a    d+l aav++++++ vA+++aa r++    gsF++++ld+l+ + 
  CCE27972.1 431 AAAYeADALVAAVAGTVMFGVAAERAARREDVRgpGSFVPAFLDELYGIR 480
                 766527888888***********999988764455***********9875 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.3   1.2   2.6e-60   9.3e-57       1     181 []       9     204 ..       9     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 191.3 bits;  conditional E-value: 2.6e-60
    TMP-TENI   1 lylvtdskld..kneellevveealkggvtlvqlRekeldarellelaeklaalcrkygvpliindrvdlalavgadgvHlgqddlpvaearellgpdl 97 
                 +ylvtds+ +  ++++l  vve+al+ggvt+vq+R+k+  + +++++a++l+++++kygvpl+indrvd+a +vg++gvH+gqdd++ ++ar+llgp +
  CCE27972.1   9 VYLVTDSTPEilADKHLPTVVEAALRGGVTMVQYRDKTGRKDDVVAMARELHRVTQKYGVPLLINDRVDVAVEVGCEGVHIGQDDMEFQQARQLLGPAK 107
                 69*****999999************************************************************************************** PP

    TMP-TENI  98 iiGlSvhsleeaeeaealgadYigvGpifpTdtKkda.eplgleglkelaeale......iPvvaiGGitlenvaevl......eagadgvavvsai 181
                 +iG++++s++ea+ a a+gadY+g+G++++T+tKkd  + +g +g++++ +al+       P+v iGG+++ n+ +vl      ++ +dg+avvsa+
  CCE27972.1 108 VIGVTANSEAEALSACAAGADYLGLGTVYATATKKDTkSIIGPSGVRTILNALHeagyssTPTVCIGGVNATNASAVLsqsaspHKSLDGIAVVSAV 204
                 ******************************************************9999999*****************9999999999*******96 PP

>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.9   4.8e-09   1.7e-05      70     229 ..     282     460 ..     202     467 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 4.8e-09
                  EEEE-TT-SSSHCHHH...HCHHHCCCCS-EEEE...GGGGGSGGGG....TTTTSSEEEE--HHHHHHHCTTTCH...........HCCSHHHHHHH CS
  Carb_kinase  70 avviGpGLgrdekikk...lleevlekdeplviD...AdgLnllaqkne.lserkaeviLTPhkkEfkrLlkaivk...........keddrlelare 149
                  a+v+ +G  + + ik+   +l+   ++++p+v D   A++  ++    + l    + +i+  ++ E +   +a v+           +  +r++l++ 
   CCE27972.1 282 ALVLNMGTVTPDGIKNyiqALKAYNAAKRPVVFDpvgAGATSVRRSATQtLLSSGSFTIIKGNQAEIQTVYGATVTqrgvdssgpslSIAQRATLVQS 379
                  455555555544544455588888899999999977666666666666677777888999999999999999999999999999998899******** PP

                  HHHHHTTEEEEESTTSEEEECTTEEEEE----GGG.-STTHHHHHHHHHHHHHHCTS.SHHHHHHHHHHHHHHHHHHHCCCT CS
  Carb_kinase 150 laqklnavvllkgekdvivspegevlinstgssal.akGGsGDvLaGligalLaqne.asyeaaiaaawlhgaasdeaaekk 229
                  la++ ++vvll g  d+i + +  +l +++g  +l ++ G+G +L  +++a+ a  e +++ aa+a++++ g a+++aa ++
   CCE27972.1 380 LARQRHCVVLLTGPTDLISD-GRRTLRVDNGHELLgTVTGTGCTLGTAVSAMAAAYEaDALVAAVAGTVMFGVAAERAARRE 460
                  *****************998.777777777776653889*************9988879999***************99876 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   2.2e-06     0.008      76     215 ..     297     435 ..     242     458 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.2e-06
                   HHHHHHH..HHTTSSEEEE---SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-S.. CS
  Phos_pyr_kin  76 evvaekl..kkykvpvVlDPVmvaksgselleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghleg.. 168
                   + +++    +  k pvV+DPV     g++ ++++a+++l +      t+i  N +E++   g +  t+  +++ + +l+   ++a l++    +   
    CCE27972.1 297 NYIQALKayNAAKRPVVFDPVG---AGATSVRRSATQTLLS--SGSFTIIKGNQAEIQTVYGAT-VTQRGVDSSGPSLSIA-QRATLVQSLARQRhc 386
                   444333211335559*****95...5778888888888887..78899**********999944.3444444444444432.333333333221112 PP

                   ..SSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHHHHHHHHCTS CS
  Phos_pyr_kin 169 ..eeavvtdvlydgeeveeleaerietknthGtGCtlssaiaaelakge 215
                       +  td++ dg ++ ++++ +    +  GtGCtl +a+ a  a  e
    CCE27972.1 387 vvLLTGPTDLISDGRRTLRVDNGHELLGTVTGTGCTLGTAVSAMAAAYE 435
                   2222223599999999999998888889*************99887643 PP

>> DUF5614  Family of unknown function (DUF5614)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2     4e-05      0.14      68     130 ..     177     243 ..     156     249 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4e-05
     DUF5614  68 nlthlkaiv.esa...esledvvsvlhvfayedaagekqtlvvdvvangGhtwvkaiGrkaealhni 130
                 n t   a++ +sa   +sl+++  v  v+a ed a+  + lv  v+       v  +Grk+   hn+
  CCE27972.1 177 NATNASAVLsQSAsphKSLDGIAVVSAVMAAEDPAAVSRDLVGKVICAKTADAVAVVGRKTPLSHNM 243
                 555566665233333379*******************************************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3725.06
//
Query:       CCE27973.1  [L=477]
Description: related to cercosporin resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3336.90
//
Query:       CCE27974.1  [L=601]
Description: probable 5-aminolevulinic acid synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-83  280.0   0.0    4.1e-83  279.5   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
     0.0003   19.4   0.0    0.00048   18.8   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
     0.0015   17.6   0.0     0.0034   16.4   0.0    1.6  2  Aminotran_5      Aminotransferase class-V
     0.0051   16.2   0.1     0.0088   15.4   0.1    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
       0.05   12.2   0.0      0.078   11.6   0.0    1.2  1  DUF3405          Protein of unknown function (DUF3405)


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.5   0.0   1.1e-86   4.1e-83       2     363 .]     164     520 ..     163     520 .. 0.98

  Alignments for each domain:
  == domain 1  score: 279.5 bits;  conditional E-value: 1.1e-86
                    EEEESSSSSTTSTTSSHHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgde 95 
                     v+ +++n+ylg++++  + + +k++ +  ga+aggt+n++g+++++ ele +la+++         +eaa+v++s++ a++++l++l +++p+++
     CCE27974.1 164 RVTVWCANDYLGMGRNKRVLNKMKQTLDeyGAGAGGTRNISGHNRHAIELEGTLARLHA--------KEAALVFSSCYVANDATLATLGSKMPDCV 251
                    5789************8888888888888******************************........999************************** PP

                    EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTT CS
  Aminotran_1_2  96 ilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYa 191
                    il++++++as+++++r+sg + + ++       h+d+ +le++l+++p + +  k+i++es+++++G++ + ee+++l   a+ky++++f+De++a
     CCE27974.1 252 ILSDSLNHASMIQGIRHSGTKKIVFK-------HNDVADLEAKLASLPLHVP--KIIAFESVYSMCGSLGPIEEICDL---ADKYGAITFLDEVHA 335
                    **************************.......*******************..************************...*************** PP

                    TCBSSSSHTHHH.............HGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 192 gfvfgsldavat.............ranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqsel 274
                    ++++g+++a  +             r +++++++ +i+g+l+Ka+G++G   Gyi+g+ ++v+ +r+l+ +f+++++l++a++a ++++ ++q e 
     CCE27974.1 336 VGMYGPQGAGVAehldweahqkgspRGTIMDRID-IITGTLGKAYGCVG---GYIAGSGKLVDMIRSLAPGFIFTTSLPPATMAGAKASIEYQMEY 427
                    *****9977666889*******************.**************...******************************************** PP

                    HHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS...TTEEEEEC.TTS-HHHHHHHHHHH CS
  Aminotran_1_2 275 eemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftv...pgrlRitv.Aglteeeleelveal 363
                    +  r+  q +++ +++eL++ +++v++++s+++++ +++ae ak++s++Ll+ +++yv+ ++++tv   ++rlRit+ +g+t+e+ +elvea+
     CCE27974.1 428 DGDRKLQQLHTRAVKEELNNRDIPVIPNPSHIIPILVGNAELAKAASDMLLQDYHIYVQSINYPTVpvgQERLRITPtPGHTKEYRDELVEAV 520
                    *******************************************************************************************96 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.3e-07   0.00048      55     180 ..     211     338 ..     204     341 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.3e-07
                      HHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-T.TEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHH.HHHHCCTTEEEEEEESS CS
  Cys_Met_Meta_PP  55 svleeriaaLeggeaalavssGmaAiaaailallka.GdeivvsddlYggtqrllkkvlkklgievkfvdtsdlee.lekaikentklvylEtp 146
                        le ++a L+  eaal++ss   A +a++ +l ++  d +++sd+l   +  +  +     +i +k+ d++dle+ l++   +  k++ +E++
       CCE27974.1 211 IELEGTLARLHAKEAALVFSSCYVANDATLATLGSKmPDCVILSDSLNHASMIQGIRHSGTKKIVFKHNDVADLEAkLASLPLHVPKIIAFESV 304
                      5799****************************9876699999***99988877766666667788999998887751444445588******** PP

                      -TTTT----HHHHHHHHHHTT-EEEEEGTTTHTT CS
  Cys_Met_Meta_PP 147 tnpllkvvDiekiaklakkagvlvvvDntfaspl 180
                       +   ++  ie+i++la k g+++++D + a ++
       CCE27974.1 305 YSMCGSLGPIEEICDLADKYGAITFLDEVHAVGM 338
                      ***************************9887765 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   9.4e-07    0.0034      48     181 ..     213     337 ..     178     345 .. 0.67
   2 ?   -3.1   0.0      0.81   2.9e+03     256     318 ..     412     466 ..     407     487 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 9.4e-07
                  HHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--.TTEEEEE CS
  Aminotran_5  48 arekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldeleklln.ektklva 144
                   + ++a+l+  e    ++f s+   a+ + + +l+   k  d+++++++  ha +  +q +++  + k+ v++ +     dl++  + l  + +k++a
   CCE27974.1 213 LEGTLARLHAKE--AALVFSSCYV-ANDATLATLG--SKMPDCVILSDSLNHASM--IQGIRHSGTKKI-VFKHN--DVADLEAKLASLPlHVPKIIA 300
                  455555554444..3555555544.6666666664..467788888877777777..799998877777.44444..4445444444443399***** PP

                  EESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTT CS
  Aminotran_5 145 ithvsnvtGtiqpveeigklakkkgalvlvDaaqavg 181
                  +  v ++ G + p+eei++la k+ga++++D + avg
   CCE27974.1 301 FESVYSMCGSLGPIEEICDLADKYGAITFLDEVHAVG 337
                  *********************************9987 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.81
                  HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETT CS
  Aminotran_5 256 agiiglgaaleyleeigleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkg 318
                  a + g +a +ey   ++++  +k ++  + +++e+l++ +   +      ++ ++i+ + + +
   CCE27974.1 412 ATMAGAKASIEYQ--MEYDGDRKLQQLHTRAVKEELNNRDIPVI------PNPSHIIPILVGN 466
                  6677777777776..55555566666677777777777776666......3445555555544 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   2.4e-06    0.0088      22     151 ..     207     338 ..     194     351 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.4e-06
                      SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEE.SSS-THHHHHHHHTT-E.EEEE-B-TTTSSB-GGGCGGG--TTEE CS
  DegT_DnrJ_EryC1  22 gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvp.sltFvatanavlelgak.pvfvDvdpdtynidpaaieaaitertk 113
                      +++  e+E  +a+ + ++ a+ +ss+  A+  +L  lg +  d VI   sl+ ++ ++ ++++g k  vf   d +++  + a++   + +  +
       CCE27974.1 207 NRHAIELEGTLARLHAKEAALVFSSCYVANDATLATLGSKMPDCVILSdSLNHASMIQGIRHSGTKkIVFKHNDVADLEAKLASLPLHVPKIIA 300
                      5677799*********************************999999883567777789******862689999999999999999999999888 PP

                      EEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT- CS
  DegT_DnrJ_EryC1 114 aIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGa 151
                         +  + G    ++++ ++a+k+g + + D  hA+G 
       CCE27974.1 301 FESVYSMCGSLGPIEEICDLADKYGAITFLDEVHAVGM 338
                      8889999*****************************95 PP

>> DUF3405  Protein of unknown function (DUF3405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.2e-05     0.078     233     277 ..     121     165 ..      45     176 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.2e-05
     DUF3405 233 peydyfWnwEmDvRytGhyyelldklsefakkqpRkglweRnerf 277
                  +y+ f+  E+D ++  + y +++++++ ak+ pR ++ ++ er 
  CCE27974.1 121 FDYEGFYTAELDKKHHDKSYRYFNNINRLAKEFPRAHMANKDERV 165
                 36777*********************************9998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4360.39
//
Query:       CCE27975.1  [L=1783]
Description: related to DNA repair protein rhp54 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-40  138.6   0.0    3.4e-40  137.8   0.0    1.3  1  SNF2_N      SNF2 family N-terminal domain
    6.3e-20   71.6   0.0    3.8e-19   69.1   0.0    2.3  2  Helicase_C  Helicase conserved C-terminal domain
    5.3e-06   26.5   0.0    1.2e-05   25.4   0.0    1.6  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.8   0.0   5.8e-44   3.4e-40      55     348 ..     902    1198 ..     881    1200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 137.8 bits;  conditional E-value: 5.8e-44
                  T--EEE---TTS--HHHHHHHHH...HHTTTS---..............S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH---------- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N   55 vrGGiLaDemGLGKTvqvlalilaqrakeekdkek.......krkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvap 144 
                   +G++La+ mGLGKT+qv++l+ a ++++ +           +  d  +  tL+++Pa l+++W +e+  +  +  l   +  +++++ ++++ +a+
  CCE27975.1  902 RQGCLLAHSMGLGKTMQVITLLVAIQEASRS---SdpsttsqIPSDLQQSKTLVLCPAGLVNNWIDELLLWDVDRILGGPYAIDSTMSAEERVATAE 995 
                  57********************955533322...22335666566666777********************88888877666666778888899999 PP

                  -------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  145 klladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtf 241 
                  ++ ++ +v++++Y +l+  + ++k ++     + + vv DE+htlkn +++a+ ++s+++t  r+ +tG P+ n+ e+++++++ + ++ +g    f
  CCE27975.1  996 QWSQNGGVLVIGYTMLN--SIYGKAPERTFFEKPNLVVADEAHTLKNPDTQAHAVCSRFRTMSRIAMTGSPLANNIEEYHSMIDWVAPNYLGPISEF 1090
                  9****************..6689999999999***************************************************************** PP

                  HHHTHHHHH............HHHHHHHHHHHTT-STTEE---GGGT.--S---EEEEEEEEE--HHHHHHHH....................HHHH CS
                  xxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  242 dkllqrpie............aqaekgrsrLlqllqrlmlrrakkdv.eknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalks 325 
                  +  + +pi+            + a k  + L q +++ + r++ k   e++lPpk e ++ +   + + ++Yn +l+             ++  +++
  CCE27975.1 1091 RCIYANPIQqglsagsggsekRRALKMLQVLKQTVAPKVHRATIKSCmEEDLPPKREFVLCVAPRPLQVSLYNLYLS------------AARERVTQ 1175
                  ***************997766666677777777777888888877776889**********************3333............33333333 PP

                  HH-HHH-HHHHHHHHHHHHH--- CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  326 sskskekilelllelrqacnhpq 348 
                  ++ +++ i+ l+ +lr +c hp 
  CCE27975.1 1176 GKYKQAAIFDLVFRLRTICAHPC 1198
                  33344669999999999999986 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.51   3.1e+03      45      65 ..     980    1000 ..     958    1012 .. 0.82
   2 !   69.1   0.0   6.4e-23   3.8e-19       2     111 .]    1251    1362 ..    1250    1362 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.51
                  EESTTSTHHHHHHHHHHHHTT CS
  Helicase_C   45 vlhgelpqnereeileqfnkg 65  
                  +++++++++er ++ eq+ ++
  CCE27975.1  980 AIDSTMSAEERVATAEQWSQN 1000
                  6899*************9643 PP

  == domain 2  score: 69.1 bits;  conditional E-value: 6.4e-23
                  HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEEESGGGTSSSTSTTESEEEESSS CS
  Helicase_C    2 kleallell.kleeeggkilifvntidrlekvklllekk...gikvavlhgelpqnereeileqfnkgesd.vLiatdvaerGidipkvnlVinfdl 93  
                  k+e+l+++l + ++eg+k+l+f+++  +l+   +l+  +   g  + +l+ge p ++r++ ++ fn+g+    Li+t++++ G++i ++n V++fd+
  CCE27975.1 1251 KVEMLIKILdHARNEGDKVLVFTHSLPTLN---YLNDLFisqGRAFEKLDGEYPIKKRQDLIKTFNSGQAEvALISTKAGGVGLNIHGANRVVIFDF 1344
                  8899*****999*****************5...5533334449****************************99************************ PP

                  SSSHHHHHHHHTTSSSTT CS
  Helicase_C   94 prnvtsyiqriGRtgRag 111 
                   +n+ + +q++GR++R+g
  CCE27975.1 1345 GFNPVQEQQAVGRAYRIG 1362
                  ****************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0     2e-09   1.2e-05       5     169 ..     881    1064 ..     878    1066 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2e-09
                  -HHHHHHHHHHT........TTSEEEEEESTTSTHHHHHHHHHHHH-S....................-EEEEESSHHHHHHHHHHG.....GGGTG CS
      ResIII    5 reyQeeaienlleklks..krdkrglikmaTGtGKTlvaaklierllkkgkee...............kflflvprkslleqtleef.....kkfls 79  
                  +++Q+e ++ + +++ +    ++  l+++  G GKT+  + l  +++++ + +               k+l+l+p   l++ +++e+      ++l 
  CCE27975.1  881 KDHQIEGVRFMWNQIIQdsALRQGCLLAHSMGLGKTMQVITLLVAIQEASRSSdpsttsqipsdlqqsKTLVLCPAG-LVNNWIDELllwdvDRILG 976 
                  67888888888877764333344556**********99988888888877766889*******************74.5666666654444488888 PP

                  G....GEEEESSS-B--........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T.TTHHHHHT---SEEEEEESS- CS
      ResIII   80 eaykeigkkvsgdkkka.kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk.swreilekfkeavllglTATp 169 
                   +y+ i   +s +++ a  e+ s+n  +lv+ + +l+++     ++ e+   ++ ++++ DEaH l+  + +  ++   f+   ++++T+ p
  CCE27975.1  977 GPYA-IDSTMSAEERVAtAEQWSQNGGVLVIGYTMLNSIY---GKAPERTFFEKPNLVVADEAHTLKNPDtQAHAVCSRFRTMSRIAMTGSP 1064
                  8876.444444444444479999*****************...8899999999999************8535556899999999***99977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1783 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.27s 00:00:01.19 Elapsed: 00:00:00.44
# Mc/sec: 12165.12
//
Query:       CCE27976.1  [L=509]
Description: related to glutathione synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.8e-134  447.2   0.0   4.8e-134  446.8   0.0    1.0  1  GSH_synth_ATP  Eukaryotic glutathione synthase, ATP binding d
      4e-33  113.9   0.0    7.4e-33  113.1   0.0    1.5  1  GSH_synthase   Eukaryotic glutathione synthase
  ------ inclusion threshold ------
      0.081   13.0   0.2       0.14   12.2   0.2    1.4  1  ApoLp-III      Apolipophorin-III precursor (apoLp-III)


Domain annotation for each model (and alignments):
>> GSH_synth_ATP  Eukaryotic glutathione synthase, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.8   0.0    8e-138  4.8e-134       5     375 .]      15     508 ..      12     508 .. 0.94

  Alignments for each domain:
  == domain 1  score: 446.8 bits;  conditional E-value: 8e-138
                    xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP   5 eelveeakdwalahGllvr...kaekkekkessesathapvtLlPspfprklfeeAvevqkayneLyakvasdeefLeevleevikvDeFtakLwe 97 
                     +l++ +kdwa+ hGl+vr   +  + e + ++++ + apvtL+Ps fpr++f +  + qkayneLya+v++deefL +++++v   DeF+++Lw+
     CCE27976.1  15 ATLAQIVKDWASGHGLVVRpppAVIAAEADPAQVASVPAPVTLFPSGFPRNAFIQGLAAQKAYNELYAAVSRDEEFLADIVKQV--SDEFVQSLWK 108
                    578899*************8764444555566888899**********************************************..7********* PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP  98 iyekvkkeglvqklslglfRsDYllheeee.keelslkqvEfNtisssfgglsskvselhryllkkekkkk...sllksnelpenealeelaegla 189
                    ++++vk+eg++q+lslglfRsDY+ h++ +  +e +lkqvEfNti+ssfggls ++++lh+yl+k+++          + +lpen+a+e+la gl+
     CCE27976.1 109 VHQDVKSEGYTQPLSLGLFRSDYMAHADASiPAEDQLKQVEFNTIASSFGGLSVRTAQLHSYLAKTTYPFLqqpVPDGTLDLPENRAVEGLAGGLE 204
                    ***************************98887889******************************6655446544455556*************** PP

                    xxxxxxxx........................................................................................ RF
  GSH_synth_ATP 190 kAhkaysk........................................................................................ 197
                    +A++ay++                                                                                        
     CCE27976.1 205 AAYHAYGApeaehtkciiflvqeeerniwdqrhleyqlaksspaipvfrlafaditkyttlaptgkrqllysspsnpgvkhevavvymragygpgd 300
                    ******777788999********************************************************************************* PP

                    .....................xxxxxxxxxxxxxxxxxxxxxx......xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx..xxxx RF
  GSH_synth_ATP 198 .....................PsiatqLagtKkvqqvLakpgv......Lerfl.eekeeveklretFaglysLdkdese.gkeavklal..eepe 262
                                         Ps++ qLagtKkvqqvLa+p+       L+rf+ +++ ++ +l +tF+++y++d+  se g  ++++al  e++e
     CCE27976.1 301 ypnheawearyhlershaikcPSVLSQLAGTKKVQQVLATPRSsteasvLSRFIqDDTPSAMELWKTFTNIYPMDE--SEvGLVMRRMALdpEQCE 394
                    ****************************************998888888****736667788************65..5669********9999** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP 263 kyVLKPqrEGGGnNiYgedipefLkklkeeersaYILMelieppavknvlvraegevekeevisELGiygtilfkke..evlvneeaGyllRtKas 356
                    kyVLKPqrEGGGnNiYg++ip+fLk++++++++++ILMeli+p++++n+++r +g++e+++vi ELG+yg++l++++  e+l+neeaG+llRtK++
     CCE27976.1 395 KYVLKPQREGGGNNIYGKAIPNFLKSISSSSWASFILMELIKPQTQRNLILR-NGKIEEGDVINELGVYGACLWNHQsgEILHNEEAGWLLRTKGD 489
                    ****************************************************.99*********************999***************** PP

                    xxxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP 357 ssdegGVaaGfgvlDsplL 375
                    +s+egGVaaG+g++Ds+ L
     CCE27976.1 490 KSEEGGVAAGYGCMDSVAL 508
                    ****************987 PP

>> GSH_synthase  Eukaryotic glutathione synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.0   1.2e-36   7.4e-33       2     103 .]     220     329 ..     219     329 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 1.2e-36
                   EEEEEE-TT-TTHHHHHHHHHHHHHCC..-EEEEE-HHHHHHHEEE...TT-EEEETTT......EEEEEEEECS-SSGGG--SHHHHHHHHHHHHS CS
  GSH_synthase   2 ivlfvvqenernvfDqrlleyellekh..ikvirvtleelkeetkleekekkkllldkk......kevsvvYfRagYapkdypseeeweaRlllErs 90 
                   +++f+vqe+ern+ Dqr+ley+l +++  i+v+r+ ++++ + t+l+ + k++ll++++      +ev+vvY+RagY p dyp++e+weaR++lErs
    CCE27976.1 220 CIIFLVQEEERNIWDQRHLEYQLAKSSpaIPVFRLAFADITKYTTLAPTGKRQLLYSSPsnpgvkHEVAVVYMRAGYGPGDYPNHEAWEARYHLERS 316
                   9************************999******************9999******9999************************************* PP

                   SSEEET-HHHHHH CS
  GSH_synthase  91 saikcPsiayqLa 103
                   +aikcPs+  qLa
    CCE27976.1 317 HAIKCPSVLSQLA 329
                   ***********96 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   2.4e-05      0.14     103     144 ..      73     114 ..      69     116 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.4e-05
   ApoLp-III 103 sqklaeslkensqeakeklakaikqayddaveaaqklakqLk 144
                 +qk+ ++l ++++  +e la+ +kq++d++v+++ k+ + +k
  CCE27976.1  73 AQKAYNELYAAVSRDEEFLADIVKQVSDEFVQSLWKVHQDVK 114
                 799999999999*************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3920.85
//
Query:       CCE27977.1  [L=144]
Description: related to single-stranded DNA-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-19   68.7   0.0    4.6e-19   68.4   0.0    1.1  1  SSB       Single-strand binding protein family


Domain annotation for each model (and alignments):
>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   2.6e-23   4.6e-19       3     103 ..      30     126 ..      28     127 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 2.6e-23
                 EEEEEEEESSS-EEEEETTSEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEEHH.HHHHHHHH--TT-EEEEEEEEEEEEEECTTSCEEEEEEEEEEE CS
         SSB   3 kvilvGrlgkdpelrqtesGnavarftlatnrrfkdqegekdeetewhrvvvfgk.laevvaeylkkGslvyveGrlqtrkyedqegqkrysteivaee 100
                 ++++vG+l+ +pe  +t +G++++++ +a+n       ++++++t+w++++ f +   + +  +l+kG+lv+veG+ ++++y+d+egq r++++i++++
  CCE27977.1  30 RITVVGNLADTPEASTTSTGKEIIKYAVASNH-----GAKDNRQTSWFKITNFADgPRRDFMLSLSKGTLVLVEGEASMKNYQDKEGQPRSVLNIIQRN 123
                 89******************************.....67889*************999999999**********************************9 PP

                 EEE CS
         SSB 101 vqf 103
                 +++
  CCE27977.1 124 IEV 126
                 986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1174.63
//
Query:       CCE27978.1  [L=309]
Description: related to pheromone receptor PRE-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-60  202.8  11.5    7.4e-60  202.6  11.5    1.0  1  STE3         Pheromone A receptor
     0.0013   18.8  19.3      0.035   14.1  11.5    2.1  2  HisKA_7TM    N-terminal 7TM region of histidine kinase
  ------ inclusion threshold ------
      0.081   13.2   0.5       0.89    9.9   0.0    2.5  2  Sigma_reg_N  Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> STE3  Pheromone A receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.6  11.5   1.2e-63   7.4e-60      42     289 .]       2     254 ..       1     254 [. 0.96

  Alignments for each domain:
  == domain 1  score: 202.6 bits;  conditional E-value: 1.2e-63
        STE3  42 naiiWsgnvvdkapv...wCDisskliiaasvglpaallcIvrrLykilslr.avllsskekrrkliidlliclgiPllimalhyivqghRydIiediG 136
                 n++iW+++++ +++    +CD+ +++++++   + ++ll+Ivr+L++++ l  a+ l+ +e+rr++++++li+++ P++++al+++v ++Ry + + iG
  CCE27978.1   2 NSLIWRNDNIRSWWPgfgLCDVDVYIQNIGIGLFVTCLLAIVRNLARQVGLMrASALTVQERRRRNLYQALIIFPYPIVQLALTWPVASQRYIVGTLIG 100
                 9********9999999**********************************777********************************************** PP

        STE3 137 Cvpalyntwlalvlvliwpliislvaavyavltlrafikrrkqfkellsss..nsglnksrflRLlalalliilltlplsiyllvsnltqsplqpwysw 233
                 C+++ + +w++lv+++++p++++l++a yavl++ +f+k  k++++ lss+  +++++++ ++RL++++++i++++lp+ ++l+v n+ q++   +y++
  CCE27978.1 101 CSWNPHASWPYLVFFVLPPPVFALITAGYAVLIFKRFRKVAKTTATALSSNriAQQRSQRARRRLYLMVISILIPFLPVVVALTVLNILQMHGVLPYDY 199
                 **********************************************9999768999********************************99996679*** PP

        STE3 234 eevha.....dfstilkvpasewkasskevsalelnrwilvvlailfflfFGfgkeavksY 289
                 +evh+      +st+  +++s++++      a+  n++i +++ai +f+fFG++k+a++ Y
  CCE27978.1 200 NEVHNhdlpiPWSTVVLITSSQISW------AVLANCYISILTAIPIFVFFGLTKDAINDY 254
                 *****99999999999997777666......6666************************99 PP

>> HisKA_7TM  N-terminal 7TM region of histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1  11.5   5.9e-06     0.035      59     188 ..      26     190 ..      14     199 .. 0.71
   2 !    9.2   1.3   0.00019       1.1     121     177 ..     213     270 ..     191     276 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.9e-06
   HisKA_7TM  59 klqylgivfipvlwllfaleytgk...........rrwltrrrlallllvpvltlilvltnp..lhh.....lf...yvsagsfvvlef..ehGplfwv 134
                 ++q +gi ++++++l+++ + +++           +++ +r+++ +l+++p  ++ l+lt p  + +     l+   ++ ++s+++l+f   + p+f  
  CCE27978.1  26 YIQNIGIGLFVTCLLAIVRNLARQvglmrasaltvQERRRRNLYQALIIFPYPIVQLALTWPvaSQRyivgtLIgcsWNPHASWPYLVFfvLPPPVFA- 123
                 57889*****************9768888777776444445566667778855555555544112332222222444799999999999888888885. PP

   HisKA_7TM 135 hlaysyllliagvvlli...........ralirssglyrrqalllligllvPwlanllyl..lglsp 188
                  +  +y++li+  +  +           r + + s++ rr+ +l++i++l+P+l  ++ l  l++ +
  CCE27978.1 124 LITAGYAVLIFKRFRKVakttatalssnRIAQQRSQRARRRLYLMVISILIPFLPVVVALtvLNILQ 190
                 7888999999998888866666666654444477779999**************9999994334444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00019
   HisKA_7TM 121 fvvlefehGplf.wvhlaysyllliagvvlliralirssglyrrqalllligllvPwl 177
                 +vvl ++  + + ++ + y+ +l+++ +++++     + + yrr al l +g+l+P l
  CCE27978.1 213 TVVLITSSQISWaVLANCYISILTAIPIFVFFGLTKDAINDYRRIALFLGLGVLFPSL 270
                 4444444444443567777777888888888866667778****************76 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00015      0.89       5      44 ..     159     201 ..     156     207 .. 0.80
   2 ?   -0.0   0.2      0.18   1.1e+03      21      44 ..     232     256 ..     225     262 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00015
  Sigma_reg_N   5 kkakrksilrivlislivlllifvilvvtllyl...aekegnk 44 
                  ++a+r+++l++++i + +l ++++++v+++l +   ++  +n+
   CCE27978.1 159 QRARRRLYLMVISILIPFLPVVVALTVLNILQMhgvLPYDYNE 201
                  699**************99999999999998875664444444 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.18
  Sigma_reg_N  21 ivlllifvil.vvtllylaekegnk 44 
                  i++l+ ++i+ +++l ++a + +++
   CCE27978.1 232 ISILTAIPIFvFFGLTKDAINDYRR 256
                  5667777777667776666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2316.34
//
Query:       CCE27979.1  [L=1188]
Description: uncharacterized protein CPUR_01453 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-54  185.3  28.1    1.4e-54  184.8  28.1    1.2  1  DUF4203    Domain of unknown function (DUF4203)
     0.0034   17.9   0.0       0.36   11.4   0.0    3.0  2  OAD_gamma  Oxaloacetate decarboxylase, gamma chain


Domain annotation for each model (and alignments):
>> DUF4203  Domain of unknown function (DUF4203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8  28.1   1.6e-58   1.4e-54       1     201 []     130     335 ..     130     335 .. 0.99

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 1.6e-58
     DUF4203   1 vlgailillGlvlcffGyrlfkltlflsgfllgsllvlvlilkvvvlp.sslvqgaslvaalvvGllgGllallfwelglfllgalgGlllallilsll 98 
                 v+g++++++G+v++++G++++++++f+s++++++l+v+vli++v + p ++++qg+++va++++G+++G  a++f+el++++++algG++l++++l+l+
  CCE27979.1 130 VAGVVMLVTGVVYTLVGIKNRWIHTFFSTAYMTALGVTVLIVYVINVPsTNALQGGYVVAVILSGCAVGSAAMFFKELTEGFGCALGGFCLSMWLLCLV 228
                 789************************************************************************************************ PP

     DUF4203  99 egglitslpskaiflvivvlgllgavlslkl..qklllivatsvvGaaavvlgiDyfvgaglkefll.......nlfpratvalltypltrgdwvllal 188
                 +ggl+++ pska+f  i++++l+g++l+++   ++++liv +++ G++++vlgiD+f++aglkef++       nlfp +++   typ+t+g++v++a+
  CCE27979.1 229 PGGLVHTVPSKAAF--IAIFTLAGFALYFSRrtRDYALIVLIAFGGSTVTVLGIDCFSRAGLKEFWAyvwavndNLFPLGAD---TYPVTKGIRVETAA 322
                 **************..***************9**************************************************...************** PP

     DUF4203 189 wivlalvGvlvQf 201
                 +++++lvG+++Q+
  CCE27979.1 323 IVFIFLVGIISQI 335
                 ************6 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.018   1.6e+02      11      60 ..       8      57 ..       1      72 [. 0.84
   2 !   11.4   0.0     4e-05      0.36      12      54 ..     322     364 ..     321     396 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.018
   OAD_gamma 11 mgvVFvvLilLslvislfskiikkkakkkkkkakaaaaaaaaaaaaaeld 60
                mg  +++L++  +++s   +++k+   + +++++++a+a++ ++ +a +d
  CCE27979.1  8 MGALLLFLLFVQFAYSQSYALVKRDGGATQAASPTSAPAQSITTDSAGQD 57
                89999*******************99999999999999998877665334 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4e-05
   OAD_gamma  12 gvVFvvLilLslvislfskiikkkakkkkkkakaaaaaaaaaa 54 
                 ++VF++L+ ++  i+l + +  k ak++++ a+++++ +++++
  CCE27979.1 322 AIVFIFLVGIISQIKLWKIVREKNAKRAADRAQEKQSLEREEE 364
                 59***************99999999999988888877666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1173  (0.0654247); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.45
# Mc/sec: 7917.28
//
Query:       CCE27980.1  [L=541]
Description: uncharacterized protein CPUR_01454 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3833.93
//
Query:       CCE27981.1  [L=622]
Description: uncharacterized protein CPUR_01455 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-36  124.8   0.0    2.6e-36  124.3   0.0    1.2  1  Erf4      Golgin subfamily A member 7/ERF4 family


Domain annotation for each model (and alignments):
>> Erf4  Golgin subfamily A member 7/ERF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   1.4e-40   2.6e-36       1     116 []     462     586 ..     462     586 .. 0.98

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 1.4e-40
        Erf4   1 ivripRdyst.gdlapqFstllppeLsgy.iseeefeeiinkiNeilaeafspysvrnildnvlglltlylwslvlkthykkklkklekyieelNeel. 96 
                 i+r++Rd+ + gdlap Fs+l+p++L+++ +se+ef+++++k+N +l+  f+py++rnild +lgl+t++lw++++ t++k +++ le+++e++N e+ 
  CCE27981.1 462 IIRVKRDWLVaGDLAPAFSNLYPEILDPAgVSEQEFRRVVDKLNAELVPIFNPYGWRNILDAALGLVTGWLWDDFGITAAKGRMNALEAWMERWNGEMe 560
                 8*************************************************************************************************9 PP

        Erf4  97 ...fkergl...kiisprrsgylsld 116
                     +e+g+   k+i++r++gy+sld
  CCE27981.1 561 ktmAEEEGVlapKLIPLRQTGYMSLD 586
                 9977888878**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4204.17
//
Query:       CCE27982.1  [L=157]
Description: uncharacterized protein CPUR_01456 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0088   16.4   0.0      0.014   15.7   0.0    1.2  1  GFA       Glutathione-dependent formaldehyde-activating enzym


Domain annotation for each model (and alignments):
>> GFA  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.8e-07     0.014      41      79 ..       8      49 ..       3      57 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.8e-07
         GFA 41 adsgnkvtrsfCpeCgsplyse...esaapevvivrvGtldd 79
                + s+++ +r+fC  Cg+pl +    ++ + +++ +++G+l +
  CCE27982.1  8 HPSQEHTKRNFCGFCGTPLSYWseePRSEADYINLTLGSLLQ 49
                467888999*********987654455566688899998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1172.72
//
Query:       CCE27983.1  [L=88]
Description: uncharacterized protein CPUR_01457 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 652.87
//
Query:       CCE27984.1  [L=282]
Description: related to members of the aldo/keto reductase family [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-47  161.8   0.0    4.7e-45  154.0   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
      0.048   13.0   0.2        0.4   10.1   0.2    2.1  2  P3A           Poliovirus 3A protein like


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0   0.0   5.3e-49   4.7e-45      20     292 ..      33     268 ..      20     270 .. 0.94

  Alignments for each domain:
  == domain 1  score: 154.0 bits;  conditional E-value: 5.3e-49
                   HHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-. CS
  Aldo_ket_red  20 alellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslps 116
                    ++++ +al+aG++++D+A++Y   ++e  +G alk+s+ kre+v+++tK+  ++++ +++ + ++ +es+  +    +  yvDl+l+H p    +s
    CCE27984.1  33 CQKAILAALDAGYRHIDSAQIY---RNESDVGAALKQSSLKREDVFLTTKI--SQSAGSFDKTYKSAVESIGMISGSGKDGYVDLFLIHLPGTGRDS 124
                   5678999***************...**************************..*****************************************999 PP

                   HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH.HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC CS
  Aldo_ket_red 117 ieevldaleelvkeGkiraiGvSnfsveqleka.kkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkep 212
                   +ee++++le+l++eG ++aiGvSn+  ++++++ +  k  ++ ++q+e +++   ++++++++c+++++ + ayspl+ G+                
    CCE27984.1 125 REELWKVLEKLYEEGRAKAIGVSNYRPQHVDEMkEYAKIWPPHVNQIELHPW--CQQKEIVQYCRDNNIVVAAYSPLACGANL-------------- 205
                   *********************************88888899***********..************************99865.............. PP

                   -------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 213 rkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                                   +++l ++a ++++s+aq+ +ryal  +++ +++p++ n e++++n+d++++ lsee+++++d l
    CCE27984.1 206 ---------------SDSTLTAVADKYKKSPAQVLVRYAL--QKGWVPLPKSGNEERIKQNADVFDFALSEEDMKTMDGL 268
                   ...............6789*********************..9*********************************9987 PP

>> P3A  Poliovirus 3A protein like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   4.4e-05       0.4      29      45 ..     178     194 ..     156     206 .. 0.80
   2 ?    0.1   0.0     0.057   5.1e+02      20      44 ..     212     236 ..     210     246 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 4.4e-05
                 --HHHHHHHHHHT--TT CS
         P3A  29 dsqEvrdYCekkgWivn 45 
                 + +E+++YC +++ +v 
  CCE27984.1 178 QQKEIVQYCRDNNIVVA 194
                 678**********9995 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.057
                 TTHHHHHHH--HHHHHHHHHHT--T CS
         P3A  20 aiaDLLravdsqEvrdYCekkgWiv 44 
                 a+aD  +   +q ++ Y  +kgW+ 
  CCE27984.1 212 AVADKYKKSPAQVLVRYALQKGWVP 236
                 6677777777888999*******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2130.32
//
Query:       CCE27985.1  [L=566]
Description: related to AMP-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-71  240.0   0.0    4.2e-71  239.8   0.0    1.0  1  AMP-binding    AMP-binding enzyme
    1.6e-18   67.4   0.1    3.6e-18   66.3   0.1    1.7  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.8   0.0   4.7e-75   4.2e-71       2     422 ..      34     464 ..      33     465 .. 0.82

  Alignments for each domain:
  == domain 1  score: 239.8 bits;  conditional E-value: 4.7e-75
                  HHHHHHSTTSEEEEE...CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTES CS
  AMP-binding   2 eeqaaktpdkvalvd...sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseak 96 
                  e++aa  p++ a+     +g   + +Y+e+ +r++ lA +L++    + +rV+il+pn+p ++ ++++++  G+v+vp n +l+  ++ayi+e +e+ 
   CCE27985.1  34 ERAAAIEPNAEAILHitpDGVTLRRSYQEFADRARGLAYYLQK---HQLSRVGILAPNTPAFLESIYGVVAGGGVIVPANYRLKGGDVAYIFECAEVD 128
                  7888899999999778888888999*****************8...57789*********************************************** PP

                  EEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS................-TSCCCS-BTTSEEEEEEE--SSSS-EEEE CS
  AMP-binding  97 vliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekae................kpeeeeelkpddlayiiYTSGTTGkPKGVm 178
                  ++i  vd+e  e+ll +   ++++k+ +++d d   +    +++ + +++                     +++++k+d+++ i +TSGTT +PKGV+
   CCE27985.1 129 CII--VDKEF-EELLGKFR-EKHSKVPLIIDIDTHVTD--GPSCGQFNQAILeglaydreqgshgwagL--QNRAIKEDEMLAIPFTSGTTSRPKGVV 218
                  ***..88777.66666665.468888888888887766..4444444433314567889999****642..56679********************** PP

                  EEH.HHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHC CS
  AMP-binding 179 lsh.rnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalka 275
                  ++h ++++a++ ++  e   + ++  ++l+ilp++h++g+++   ++ ++G  v+l +  +   p l+++l++++++t+++++P+v + l+++++ + 
   CCE27985.1 219 YTHrGAYLAAMGNIV-ESGLN-QSPCRYLWILPMFHAVGWTFPWAVVAVRGLNVCLRK-VDY--P-LIWRLLKEEGITHFNAAPTVNNLLVSAKEAE- 309
                  ***777788888873.33322.23459*************777777777888777755.433..3.457***********************76665. PP

                  HHHHCCGTT.-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSEC..EE.......CHCTTTCTSTTS-BEE-T.TEEEEEE-TTTSCBEE.. CS
  AMP-binding 276 akkakdlss.lrlvllggeplspellrffralfgeevlegYGlTEttgvv..tv.......lpleedkkklgsvGkplp.gvevkivDeetgepvp.. 360
                       +l+  ++++ ++g+p+s  ll+++ +l   + +++YG+TEt g v  ++       lp+e++ +k  ++G  +     ++i+ +++ e +   
   CCE27985.1 310 -----KLPNpVKVT-VAGSPPSGYLLQKMTDLNLIP-VHVYGMTETYGPVtkCYnlpewdhLPPEKKYAKMARQGHGFLtSLPIRIIKPDQPEHILid 400
                  .....799989985.7****************9885.799**********554489999997778888899999966443777888866643433244 PP

                  ...TTSE.EEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 361 ...dgee.GellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                     +g+e Ge++++ +  +kgY++++ea ++ f   g+ l++GDl+++++dG+ +i++R+kd+i++
   CCE27985.1 401 vakNGQEiGEIVFSANICAKGYYNDEEASRKLFA--GGVLHSGDLAVWHPDGSAQILDRAKDIIIS 464
                  55556557***********************998..57**************************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.1   4.1e-22   3.6e-18       2      76 .]     474     550 ..     473     550 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 4.1e-22
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHH..HT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrk..elgpyavpkkvvfvdelpktrsGK 76 
                    +E  l++hp+V e++Vv+++de++Ge+++a+V+ k g +   e++++++++   + +++vp++v++v+elpkt +GK
     CCE27985.1 474 LEGMLSQHPDVLEVGVVAMQDERWGERPKAYVTVKGGRDVRGEDVVRWAKHqsDISSFMVPREVEVVKELPKTSTGK 550
                    6899******************************96643357*******66669**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 4487.11
//
Query:       CCE27986.1  [L=567]
Description: related to AMP-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-73  246.4   0.0      5e-73  246.1   0.0    1.0  1  AMP-binding    AMP-binding enzyme
      4e-19   69.4   0.4    9.3e-19   68.2   0.4    1.7  1  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
      0.073   13.3   0.0        1.9    8.8   0.0    2.8  3  OKR_DC_1_N     Orn/Lys/Arg decarboxylase, N-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.1   0.0   8.4e-77     5e-73       2     422 ..      35     465 ..      34     466 .. 0.82

  Alignments for each domain:
  == domain 1  score: 246.1 bits;  conditional E-value: 8.4e-77
                  HHHHHHSTTSEEEEE...CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTES CS
  AMP-binding   2 eeqaaktpdkvalvd...sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseak 96 
                  e++a   p++ a+     +g   + +Y+ + +r++ lA +L++    k +rV+il+pn+p ++ ++++++  G+v+vp n +l+ e++ayi+e +e+ 
   CCE27986.1  35 ERAATIEPNAEAILHitpDGVTLRRSYQVFADRARGLAYYLQK---HKLSRVGILAPNTPAFLESIYGVVAGGGVIVPANYRLKGEDIAYIFECAEVD 129
                  6777788899999778888888899*****************8...68899*********************************************** PP

                  EEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS................-TSCCCS-BTTSEEEEEEE--SSSS-EEEE CS
  AMP-binding  97 vliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekae................kpeeeeelkpddlayiiYTSGTTGkPKGVm 178
                  ++i  vd+el e+lle+   ++++k+ +++d d   +    +++ + +++                     +++++k+dd++ i +TSGTT +PKGV+
   CCE27986.1 130 CII--VDKEL-EELLEKFR-EKHSKVPLIIDIDTHVTD--GPSCGQFNQAILeglacdrehgghgwagL--QHRTIKEDDMLAIPFTSGTTSRPKGVV 219
                  ***..88777.66777665.468888899998887766..444554443331457788999*****752..56679********************** PP

                  EEH.HHHHHHHHHHHHHHCSCCTT.T-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHH CS
  AMP-binding 179 lsh.rnlvanvaslkletrfklke.ddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalk 274
                  ++h ++++a++a++  e    l++ + ++l++lp++h +g+++   ++ ++G  v+l +  +   p l+++l++k+++t+++++P+v   l+++++ +
   CCE27986.1 220 YTHrGAYLAAMANIV-ESG--LNQgKCRYLWTLPMFHTMGWTFPWAVVAVRGLNVCLRK-VDY--P-LIWRLLKKEGITHFNAAPTVNTLLVSAKEAE 310
                  ***777788888873.333..333367**************777777777888777755.433..3.457***********************76666 PP

                  CHHHHCCGTT.-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSEC..EE.......CHCTTTCTSTTS-BEE-T.TEEEEEE-TTTSCBEE. CS
  AMP-binding 275 aakkakdlss.lrlvllggeplspellrffralfgeevlegYGlTEttgvv..tv.......lpleedkkklgsvGkplp.gvevkivDeetgepvp. 360
                        +l++ +++  ++++p+s +l +++ +l   + +++YG+TEt g +  ++       l ++++ +k  ++G  +     ++i+ +++ e +  
   CCE27986.1 311 ------KLPKpVQV-TVAASPPSGHLFQKMTDLNLIP-VHVYGMTETYGPItkCYnlpewdnLSPQQKYAKMARQGHGFVtSLPIRIIKPDQAEHILi 400
                  ......79997888.57****************9885.799*********955448999999666777778888885543366777776665554423 PP

                  ....TTSE.EEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 361 ....dgee.GellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                      +g+e Ge++++g+  +kgY++++ea ++ f   g+ l++GDl+++++dG+ +iv+R+kd+i++
   CCE27986.1 401 dvakNGQEvGEIVFSGNICAKGYYNDKEASRKLFA--GGVLHSGDLAVWHPDGSAQIVDRAKDIIIS 465
                  344444445*************************8..57**************************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.4   1.6e-22   9.3e-19       2      76 .]     475     551 ..     474     551 .. 0.92

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 1.6e-22
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHH..HT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrk..elgpyavpkkvvfvdelpktrsGK 76 
                    +E  l++hp+V e++Vv+v+de++Ge+++a+V+ k+g++   e++++++++   + +++vp++v++v+elpkt +GK
     CCE27986.1 475 LEGMLSQHPDVLEVGVVAVQDERWGERPKAYVTVKEGTNVRGEDVVRWAKHqsDISSFMVPREVEVVKELPKTSTGK 551
                    6899******************************99954456*******66669**********************9 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00032       1.9      34      73 ..     123     160 ..     113     167 .. 0.84
   2 ?   -0.9   0.0      0.32   1.9e+03       6      70 ..     266     345 ..     263     353 .. 0.68
   3 ?   -0.0   0.0      0.17     1e+03      27      57 ..     517     555 ..     512     559 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00032
  OKR_DC_1_N  34 eqnsriaavvlsvddeaaelldeirernedlPvFllaetr 73 
                  + + +++++++  +e +ell++ re+  ++P+ + ++t+
  CCE27986.1 123 FECAEVDCIIVD--KELEELLEKFREKHSKVPLIIDIDTH 160
                 556889*****9..99****************98888776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.32
  OKR_DC_1_N   6 irelaealekegfevvgvtstdDllsvieqnsriaavvlsvd................deaaelldeirernedlPvFlla 70 
                 +r l  +l+k ++ +++    +++++  ++ + ++ +++s+                   + +l++++ ++n  +Pv +++
  CCE27986.1 266 VRGLNVCLRKVDYPLIWRLLKKEGITHFNAAPTVNTLLVSAKeaeklpkpvqvtvaasPPSGHLFQKMTDLNL-IPVHVYG 345
                 6778888888888888888888888888888999999888876655555555555555444455555555553.6666665 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.17
  OKR_DC_1_N  27 dDllsvieqnsriaavvlsvd........deaaelldei 57 
                 +D++  ++++s+i+++++  +        + +++ ++++
  CCE27986.1 517 EDVVRWAKHQSDISSFMVPREvevvkelpKTSTGKIKKM 555
                 689999***********9988766666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 4450.98
//
Query:       CCE27987.1  [L=725]
Description: uncharacterized protein CPUR_01461 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-24   83.9   0.1    1.7e-23   82.8   0.1    1.6  1  VPS9      Vacuolar sorting protein 9 (VPS9) domain
  ------ inclusion threshold ------
      0.045   14.1   0.1       0.15   12.3   0.0    1.9  2  DUF5601   Domain of unknown function (DUF5601)


Domain annotation for each model (and alignments):
>> VPS9  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.1   1.9e-27   1.7e-23       2     103 ..     280     381 ..     279     382 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 1.9e-27
        VPS9   2 eqaseeLkklseaksPreKlkcllrtieeiteavskseegeslgaDdlLPiliyviikssppnl..ysnvqfikrFrsktllegeegYylttleaavef 98 
                 e+a  ++ k+sea+ P  K ++l++++++i++++  +  + s +aD+++P+liy++i+  p++l  +s+++fi+ Fr++ +l+ge++Y+lt+leaa++f
  CCE27987.1 280 EEARTDIVKMSEARYPLAKANHLKAAHKSIVDTL--ADVHPSASADEIMPMLIYTLITVPPEKLhvISDLHFIQFFRWEPKLTGEAAYCLTNLEAAISF 376
                 789999****************************..99999*********************66559******************************** PP

        VPS9  99 iesle 103
                 +++++
  CCE27987.1 377 LQTID 381
                 *9986 PP

>> DUF5601  Domain of unknown function (DUF5601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.7e-05      0.15       5      43 ..      96     136 ..      94     146 .. 0.75
   2 ?   -2.5   0.0      0.75   6.8e+03      51      65 .]     204     218 ..     154     218 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
     DUF5601   5 sfvrkis....qrsisieelSemVqdFyqnlaerlnktplykt 43 
                 sf++++s    +   sie+lS + qdFy   +   n++  ++ 
  CCE27987.1  96 SFIESLSakvhSTPPSIEKLSRLFQDFYALASSHVNTH--INA 136
                 5666666433366999*************999999988..555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.75
     DUF5601  51 dlldeiEkyimtrlY 65 
                  l + +E+ ++  +Y
  CCE27987.1 204 MLEEAVERRLCEGIY 218
                 455677777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5210.07
//
Query:       CCE27988.1  [L=828]
Description: probable potassium transporter TRK-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-143  478.5   4.3   2.9e-143  478.0   4.3    1.1  1  TrkH      Cation transport protein


Domain annotation for each model (and alignments):
>> TrkH  Cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  478.0   4.3  1.6e-147  2.9e-143      92     499 ..     296     705 ..     278     707 .. 0.95

  Alignments for each domain:
  == domain 1  score: 478.0 bits;  conditional E-value: 1.6e-147
        TrkH  92 gltlraqlq.....qiGglgvvvlaylsl.ptlgrgsaflylseaqkeelggkelrslselikilvvyyvgleilafvllvvliytakaysevvdstgv 184
                   + r+ +       ++   +  ++yls+ pt+gr+s+f++l+++q+eelgg+e+rsl+ l+++l +y+ g++++ +++l++ i  +++y++vvd +gv
  CCE27988.1 296 VRATRTRTLdtirsVLSNSKTEDMPYLSYtPTMGRNSNFVGLTLEQREELGGIEYRSLRTLAVVLLMYFWGFHLVILICLLPYILHNDHYGKVVDADGV 394
                 444444443344437777788889*************************************************************************** PP

        TrkH 185 splwwaffhsmSafnnlGfsltpnSlasfnknivillvaiifiilGnigFpillrviiaikkkilrdlkqikeslsflldlprrcftLllasgfvwlll 283
                 s++wwaff+s Saf + Gf+ltp+S+ sfn+  ++l+++ +fi++Gn++Fp++lr+ii++  k  +  + + e l flld+prrcftLl++sg+ w+l+
  CCE27988.1 395 SRTWWAFFTSNSAFMDVGFTLTPDSMISFNTSEFVLMITCFFILIGNTAFPVMLRFIIWVCAKLAPVGSGLWEELRFLLDHPRRCFTLLFPSGPNWWLF 493
                 *******************************************************************9******************************* PP

        TrkH 284 lelavlnvtdnilfilldegslvvksipkgsrvlkalFqsvstrtaGFsvvdlsnlhpaikvllvlmmyigglpgStaggIrrtnvyeefslgkyeieq 382
                   l++ln++d  +f++ld+gs++v +i++ +rv+ +lFq++strtaGFs v+l+ l pa+ vl+++mmyi++ p  +a++Irrtnvyee slg ye+++
  CCE27988.1 494 CILLLLNAIDLLFFMVLDLGSQPVTQISVKNRVVIGLFQAASTRTAGFSAVSLGDLNPAMPVLYLIMMYISVFP--IAISIRRTNVYEEKSLGMYESHD 590
                 **************************************************************************..**********************9 PP

        TrkH 383 ekepkavskksidgkhlerqllvdlwslflvlliilileglklsdvqepdfsffdiLfevvSaygtvGLSlG.a.knaslsaqlttisklvlialmirG 479
                  ++++     s +g hl+rql++dlw++fl++++i+i+eg k+  ++   fs+fdiLfevvSaygtvGLS+G +  nasl  ++t ++klv++a++irG
  CCE27988.1 591 VDNED-APALSYVGSHLRRQLSFDLWYVFLGFFVITICEGPKIVAQK---FSLFDILFEVVSAYGTVGLSMGaKgINASLCSDFTVVGKLVIVAMQIRG 685
                 99988.899************************************99...**********************999************************ PP

        TrkH 480 rlrglpvlldraillpsdkl 499
                 r+rglp+ ldraill s++ 
  CCE27988.1 686 RHRGLPYGLDRAILLNSEEK 705
                 ***************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.87
# Mc/sec: 2861.71
//
Query:       CCE27989.1  [L=828]
Description: probable DNA helicase RAD25 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.6e-120  400.9   0.0   3.1e-120  400.0   0.0    1.4  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
    6.2e-32  110.4   0.0    3.4e-31  108.0   0.0    2.3  2  Helicase_C_3   Helicase conserved C-terminal domain
    1.4e-14   54.5   0.0    2.7e-14   53.5   0.0    1.4  1  ResIII         Type III restriction enzyme, res subunit
      4e-11   43.2   0.0    9.8e-11   42.0   0.0    1.7  1  Helicase_C     Helicase conserved C-terminal domain
    1.7e-07   30.3   0.0    2.1e-07   30.0   0.0    1.2  1  SNF2_N         SNF2 family N-terminal domain


Domain annotation for each model (and alignments):
>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.0   0.0  8.7e-124  3.1e-120       1     237 [.     523     758 ..     523     772 .. 0.97

  Alignments for each domain:
  == domain 1  score: 400.0 bits;  conditional E-value: 8.7e-124
  ERCC3_RAD25_C   1 LqekgylakvqcaevWcpmtaefykeylkakskkkkllyvmnpnkfracefLikyhekrgDkiivfsDnvfaLkeyakklkkpyiyGetseaerlk 96 
                    L+++g++a+vqcaevWcpm++efy+eyl+a s+kk+lly+mnp+kf+ac++Li+yhe rgDkiivfsDnv+aLk+ya kl k++iyG t + erlk
     CCE27989.1 523 LSKQGHIARVQCAEVWCPMPTEFYDEYLRAPSRKKNLLYIMNPRKFQACQYLINYHEGRGDKIIVFSDNVYALKAYALKLGKAFIYGGTGQPERLK 618
                    789********************************************************************************************* PP

  ERCC3_RAD25_C  97 ilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqeaqrlGriLrakkksneeefnaffYsLvskDtkemaystkrqqflvdqGYaf 192
                    +l++f++np vnt+flsk+gDts+DlPea++liqissh+gsrrqeaqrlGriLrak++ n+e+fnaffYsLvskDt+em++s+krq+flvdqGYaf
     CCE27989.1 619 VLENFQHNPLVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKRR-NDEGFNAFFYSLVSKDTQEMFFSSKRQAFLVDQGYAF 713
                    **********************************************************.9************************************ PP

  ERCC3_RAD25_C 193 kviteleeleeeeelaystkeeqkellqkvlaakdeeaeeeelek 237
                    kvit+l++le ++ la++t++e++ellqkvl ++d+ ++e+ +++
     CCE27989.1 714 KVITQLANLEMTPGLAFATAAERRELLQKVLVENDTMEDEDITDD 758
                    **********************************99888776654 PP

>> Helicase_C_3  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   9.6e-35   3.4e-31       2     124 ..     103     227 ..     102     230 .. 0.95
   2 ?   -1.5   0.0      0.75   2.7e+03      50      94 ..     442     494 ..     434     503 .. 0.59

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 9.6e-35
  Helicase_C_3   2 ivqa.DltillegdsplaeearaaLaafAelesrpehahtyrltplSlrrAldaGltaeeiiefLerlskypvPqaleylirdvarryGklrlgl.e 96 
                   ++++  ++i+le ++p ae+a+++L+++Ae+ srp ++h+y lt +Sl++A+++Gl+  +ii++L+r+ k+p+P++++ +i+ ++++yGk++l+l +
    CCE27989.1 103 WIDPkKGKIILESFNPIAEQAQDFLITIAEPLSRPTFMHEYALTTHSLYAAVSVGLSPFDIINTLDRFLKTPLPDEIRNFITGCTQSYGKVKLVLkN 199
                   55553579*************************************************************99*************************9 PP

  Helicase_C_3  97 aslvlrsddpalleelladkkiaklllr 124
                   ++++++s dp++l++ll+++ i +l+++
    CCE27989.1 200 TKYFVESPDPEMLQMLLKNPVIGPLRVH 227
                   9**********************99976 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.75
  Helicase_C_3  50 rAldaGltaeeiiefLerls.ky.......pvPqaleylirdvarryGklrlg 94 
                   + ++  ++a+++++fL+              vP ++   ++  ++ + kl l 
    CCE27989.1 442 QSRARSYDADKMMKFLTGREwGLmlldevhVVPANIFRKVTSSIKTHSKLGLT 494
                   56666777777777776554332333333356777777777777777766665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   7.4e-18   2.7e-14       4     169 ..     341     497 ..     339     499 .. 0.88

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 7.4e-18
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdst 102
                 +r+yQe+ + ++  +    r k gli++++G+GKTlv + ++  ++k      +++l+ +   + q+++ef k+++ + ++i  ++s+ k +    ++ 
  CCE27989.1 341 IRPYQEKSLSKMFGN---GRAKSGLIVLPCGAGKTLVGITAACTIKK-----GVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKGSV---FTG 428
                 689999999998644...6899****************999999988.....7**********************999999999988888888...9** PP

                 .-SEEEEEHHHHHHTH...........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---SEEEEEESS- CS
      ResIII 103 nkkilvttiqsldadseee...eeeseellrdrfdviiiDEaHrlgakkswreilekfkeavllglTATp 169
                 ++ i+vtt++++++++ +    +++ + l   +  +++ DE+H + a + +r++  ++k   +lglTAT+
  CCE27989.1 429 STGIIVTTYSMVTQSRARSydaDKMMKFLTGREWGLMLLDEVHVVPA-NIFRKVTSSIKTHSKLGLTATL 497
                 ***************95556655555555555555************.*********************7 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   2.7e-14   9.8e-11       2     110 ..     567     673 ..     566     674 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 2.7e-14
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSSS.SSH CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesdvLiatdvaerGidipkvnlVinfdlp.rnv 97 
                 k++a+ +l+  +e +g+ki++f+ ++  l+   +     ++  a ++g + q er+++le+f+ +  ++ L  ++++ +++d+p+++++i+++    + 
  CCE27989.1 567 KFQACQYLInYHEGRGDKIIVFSDNVYALK--AYA---LKLGKAFIYGGTGQPERLKVLENFQhNPLVNTLFLSKIGDTSLDLPEATCLIQISSHyGSR 660
                 66777778777899**************95..555...345667899***************9778889**************************5559 PP

                 HHHHHHHTTSSST CS
  Helicase_C  98 tsyiqriGRtgRa 110
                 ++  qr GR+ Ra
  CCE27989.1 661 RQEAQRLGRILRA 673
                 ************8 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   5.8e-11   2.1e-07      98     218 ..     374     500 ..      66     523 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 5.8e-11
                 -...........EEEE--H.HHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE-HHHHHHHT..........TTS-S-S-SE CS
                 x...........xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx RF
      SNF2_N  98 p...........tLivvPa.slldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvittYdvlsreaelq....kkrsvlkqvewkr 180
                             +++++ +   + qW ne+ ++ +    ++++ ++++  k         +   +++++ttY+++ +  +++    k ++ l+ +ew  
  CCE27989.1 374 VgitaactikkgVIVLCTSsMSVVQWRNEFLKWSNINPDDIVAFTSDS--KG------SVFTGSTGIIVTTYSMVTQSRARSydadKMMKFLTGREWGL 464
                 044444444444999999944578*********987777777777753..33......357889***********98887779999************* PP

                 EEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 181 vvlDEghtlknstskaaeavskLstsnrwiltGTPiqn 218
                 + lDE h +    +  +++ s+++t+ ++ lt+T + +
  CCE27989.1 465 MLLDEVHVVPA--NIFRKVTSSIKTHSKLGLTATLLRE 500
                 ********975..56777888899********996654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 5648.16
//
Query:       CCE27990.1  [L=148]
Description: uncharacterized protein CPUR_01464 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-06   26.6  14.0    1.7e-05   25.2  14.0    1.7  1  zf-CHY          CHY zinc finger
  ------ inclusion threshold ------
      0.054   13.4   9.6          2    8.4   0.8    3.4  3  RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
       0.63   10.2  10.6         11    6.2   3.4    3.3  3  YHS             YHS domain
        1.5    9.1   8.8        1.1    9.5   6.1    2.2  2  zinc_ribbon_9   zinc-ribbon
        4.5    7.6  13.7         58    4.0   8.3    2.9  2  C1_4            TFIIH C1-like domain
        6.7    6.8  11.6         27    4.8  11.5    2.1  1  HypA            Hydrogenase/urease nickel incorporation, meta


Domain annotation for each model (and alignments):
>> zf-CHY  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2  14.0   5.7e-09   1.7e-05      12      74 ..      39      97 ..      30      98 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 5.7e-09
      zf-CHY 12 rapcCkklyaCreCHeeledhelerlevkevlcllCeteqekavlCkkCkk.......efaeyfCpiCkl 74
                 +pc +k+++C eCH+e+e+h+l +  +  + c++          CkkC +       e +ey Cp+C++
  CCE27990.1 39 ALPCGRKWFDCAECHAEQEKHPLLQSFELIFACKK----------CKKCFRkdtkefeESDEY-CPHCDN 97
                57999*****************9888777665544..........555522333434456666.****97 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.8   0.00067         2      21      33 ..      45      58 ..      42      59 .. 0.84
   2 ?    3.0   0.5     0.032        94      22      28 ..      69      75 ..      63      83 .. 0.78
   3 ?    6.2   0.0    0.0032       9.6       3      14 ..      91     102 ..      90     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00067
                    E.EEESSSS-EEES CS
  RNA_POL_M_15KD 21 n.feCrqCgYeepa 33
                      f+C+ C +e+++
      CCE27990.1 45 KwFDCAECHAEQEK 58
                    459*********97 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.032
                    EEESSSS CS
  RNA_POL_M_15KD 22 feCrqCg 28
                    f+C +C+
      CCE27990.1 69 FACKKCK 75
                    9999997 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0032
                     BESTTTSBEEEE CS
  RNA_POL_M_15KD   3 FCpkCgNlLlpk 14 
                      Cp C N+  ++
      CCE27990.1  91 YCPHCDNHFVID 102
                     7******98776 PP

>> YHS  YHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0041        12      33      47 ..       7      21 ..       5      22 .. 0.86
   2 ?    0.9   0.1      0.17   5.2e+02      28      41 ..      47      60 ..      43      61 .. 0.81
   3 ?    6.2   3.4    0.0036        11      26      44 ..      67      85 ..      65      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0041
         YHS 33 CkdkFedePekYata 47
                +k +F+ +P++Ya++
  CCE27990.1  7 SKPRFNSPPDHYAQT 21
                6789*********96 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.17
         YHS 28 FcSegCkdkFedeP 41
                F++++C  + e++P
  CCE27990.1 47 FDCAECHAEQEKHP 60
                9*****98877777 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0036
         YHS 26 YyFcSegCkdkFedePekY 44
                  F++++Ck  F+++ +++
  CCE27990.1 67 LIFACKKCKKCFRKDTKEF 85
                57************98776 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.7       1.6   4.8e+03      22      28 ..      68      75 ..      49      81 .. 0.56
   2 ?    9.5   6.1   0.00038       1.1      18      32 ..      86     100 ..      71     102 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.6
  zinc_ribbon_9 22 v.lCPhCg 28
                   + +C  C+
     CCE27990.1 68 IfACKKCK 75
                   23566665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00038
  zinc_ribbon_9  18 edsdvlCPhCgggFV 32 
                    e+sd +CPhC++ FV
     CCE27990.1  86 EESDEYCPHCDNHFV 100
                    566667********9 PP

>> C1_4  TFIIH C1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   7.4     0.068     2e+02       7      35 ..      54      78 ..      24      85 .. 0.75
   2 ?    4.0   8.3     0.019        58       2      38 ..      71     102 ..      70     104 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.068
        C1_4  7 kkfpklakkkkdeeltssryrCekCkndF 35
                 +   ++k++   ++ +++++C+kCk+ F
  CCE27990.1 54 AE---QEKHPL-LQSFELIFACKKCKKCF 78
                22...222222.2467899*******999 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.019
        C1_4   2 CygCqkkfpklakkkkdeeltssryrCekCkndFCiD 38 
                 C  C+k f k +k+ +     +s   C++C+n+F iD
  CCE27990.1  71 CKKCKKCFRKDTKEFE-----ESDEYCPHCDNHFVID 102
                 7778887777777644.....35556**********9 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  11.5    0.0091        27      64      95 ..      62      98 ..      19     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0091
                EEEE--EEEETTTS-EEECHH...H..HHS-TTTSSS CS
        HypA 64 ieevpvkvrCreCgkefelee...k..alrCpkCgsa 95
                +++ ++ + C++C+k f++++   +  ++ Cp+C+++
  CCE27990.1 62 LQSFELIFACKKCKKCFRKDTkefEesDEYCPHCDNH 98
                67788999*********9776333134449****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1086.17
//
Query:       CCE27991.1  [L=269]
Description: probable 20S proteasome subunit (alpha4) chain PRE6 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-53  180.5   0.0    3.4e-53  180.0   0.0    1.2  1  Proteasome      Proteasome subunit
    1.1e-11   44.2   0.5    3.6e-11   42.5   0.1    2.0  2  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.0   0.0   3.8e-57   3.4e-53       1     188 [.      28     211 ..      28     213 .. 0.95

  Alignments for each domain:
  == domain 1  score: 180.0 bits;  conditional E-value: 3.8e-57
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSS.TSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHH CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstv.eKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqr 98 
                 vk+Gt++vG+kg+d vvl+++kr+    kl++++   +Ki  +d h+++afaGl aDar+lv++ar eaq++rl+ ++p+++++++++va  +q+ytq 
  CCE27991.1  28 VKRGTCAVGVKGQDVVVLGCEKRSA--MKLQDTRITpSKIQLLDHHTALAFAGLNADARILVDKARLEAQSHRLSVEDPVTIDYITKYVAGVQQRYTQA 124
                 79***********************..99988884249************************************************************* PP

                 CTTTTTSEEEEEEEEE.TTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEE CS
  Proteasome  99 sgrrpfgvslliagvd.eeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknieva 188
                 +g+rpfg+s+l++g+d   + p+L+q++psG y ++k a aiG  s+ ++++le++yke++++e +++la+k+l e+++   ++ knie+a
  CCE27991.1 125 GGVRPFGISTLVVGFDpGSKVPRLFQTEPSGIYSAWK-ANAIGRSSKTVREFLERNYKEEMDREATIRLAIKSLLEVVQ---TGAKNIEIA 211
                 ****************55667***************8.*****99**********************************...889999987 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.1   4.1e-15   3.6e-11       1      23 []       5      27 ..       5      27 .. 0.95
   2 ?   -0.9   0.0      0.16   1.4e+03      13      18 ..     147     152 ..     147     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 4.1e-15
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YDr+l++FSPdG++fQVEYA +A
      CCE27991.1  5 YDRALSVFSPDGHVFQVEYAGEA 27
                    ********************776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.16
  Proteasome_A_N  13 RLfQVE 18 
                     RLfQ E
      CCE27991.1 147 RLFQTE 152
                     9***87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2114.15
//
Query:       CCE27992.1  [L=568]
Description: probable D-lactate dehydrogenase AIP2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-59  200.5   0.0    4.9e-59  200.0   0.0    1.2  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    2.5e-37  127.7   0.2      5e-37  126.7   0.2    1.5  1  FAD_binding_4  FAD binding domain
  ------ inclusion threshold ------
       0.16   11.7   0.6        0.3   10.9   0.6    1.4  1  zf-TRM13_CCCH  CCCH zinc finger in TRM13 protein


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.0   0.0   8.1e-63   4.9e-59       3     249 ..     317     566 ..     315     567 .. 0.99

  Alignments for each domain:
  == domain 1  score: 200.0 bits;  conditional E-value: 8.1e-63
                    SEEEEEEEEESSHHHHHHHHHHHHHH.T---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE.. CS
  FAD-oxidase_C   3 earavalvafpsfeaavkavreiaqa.giipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadvl 97 
                    +a++val++++s+e a  a+re++ +  +i++a+elmd ++ +lv+++ g++k+l+++ +++ l+e++g+++e++ ++lea +e+ l+++++ad++
     CCE27992.1 317 SAVNVALLGLESYEMAQMAFREAKTQlSEILSAFELMDGTSQNLVHKVRGDEKPLENDYPFYCLIETSGSNSEHDYAKLEAFLEHVLSEEVIADGV 412
                    5789******************************************************************************************** PP

                    ........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHH..........EEEEEEEEEETTEEEEEEEEEEE..- CS
  FAD-oxidase_C  98 vaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyg..........levvlfgHagdgnlhlyilfdladea 183
                    vaqd+++ + +w +R+++ +     + ++ +  +++D+s+P+++++++v d+ka+ld  g          ++vv +gH+gd nlhl+i++++ d++
     CCE27992.1 413 VAQDATQSKTFWSWREGITE-----CIGHWGGTYKYDVSIPLADMYSIVHDVKARLDNAGllgetdnhpvVDVVGYGHMGDSNLHLNICVRRYDKE 503
                    ********************.....899999***************************************************************** PP

                    -TT--THHHHHHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT- CS
  FAD-oxidase_C 184 eeeraeklvdevvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgk 249
                     e+ +e+ v+e+   + + +Gsis+EHG Gl+kk+++ ++++e+ l lm++iK + DP gi+NP+k
     CCE27992.1 504 VEKVLEPYVYEW---IEKRNGSISAEHGLGLAKKNFIGYSRNETMLGLMKQIKTLYDPVGIMNPYK 566
                    ************...**************************************************9 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.2   8.4e-41     5e-37       3     136 ..     142     276 ..     140     278 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 8.4e-41
                    EEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCG CS
  FAD_binding_4   3 avvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgip 97 
                    +v++p+s+e+v+++lr++ne++l v+++Gg ++l+g+++  ++ +v+++ r+n+i+++d+ +g +++ aG++l+ ++++++++g++++l+ g+  +
     CCE27992.1 142 LVLKPGSTEHVSKILRYCNEHKLAVVPQGGNTGLVGGSIpVFDEIVIHMGRMNQIHSFDDMSGSLVLDAGCILEVADQYVSERGYIFPLDLGAKGS 237
                    799***********************************999******************************************************* PP

                    SBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEE CS
  FAD_binding_4  98 gtvGGaiatnagGygsekyGlirdnvlglevvladGevv 136
                    + vGG+i+tnagG +  +yG+++ nvlg+evvl+dG+v 
     CCE27992.1 238 CQVGGNISTNAGGLRLLRYGSLHGNVLGMEVVLPDGTVM 276
                    *************************************96 PP

>> zf-TRM13_CCCH  CCCH zinc finger in TRM13 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   4.9e-05       0.3      13      29 .]     139     163 ..     132     163 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.9e-05
  zf-TRM13_CCCH  13 fCkmtrkkgs........ryCgeHl 29 
                    +C+   k+gs        ryC+eH+
     CCE27992.1 139 QCRLVLKPGStehvskilRYCNEHK 163
                    6***********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 4691.63
//
Query:       CCE27993.1  [L=661]
Description: related to alpha-actinin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-48  162.3   0.1    1.2e-22   80.1   0.0    2.9  3  CH               Calponin homology (CH) domain
    3.2e-25   88.0   0.1    1.2e-24   86.2   0.1    2.1  1  EFhand_Ca_insen  Ca2+ insensitive EF hand
    2.6e-13   49.6   0.1      1e-07   31.7   0.0    2.8  2  CAMSAP_CH        CAMSAP CH domain
      2e-05   24.1   1.0    0.00015   21.5   0.1    3.0  3  EF-hand_6        EF-hand domain
    5.6e-05   23.2   0.0       0.01   15.9   0.0    3.5  3  CH_2             CH-like domain in sperm protein
    0.00066   20.1   1.8     0.0034   17.8   1.8    2.3  1  EF-hand_7        EF-hand domain pair
    0.00077   19.3   0.7      0.018   14.9   0.1    3.2  3  EF-hand_8        EF-hand domain pair
    0.00088   18.7   0.2      0.013   15.0   0.0    2.7  2  EF-hand_1        EF hand
  ------ inclusion threshold ------
      0.089   12.7   1.1       0.26   11.2   0.1    2.4  2  Sigma70_ECF      ECF sigma factor
       0.13   12.2   1.9        1.5    8.9   0.3    2.4  2  Sipho_Gp157      Siphovirus Gp157
       0.78   10.3   2.8        2.3    8.8   0.1    2.9  3  FliG_N           FliG N-terminal domain
        3.4    8.0   7.0        5.3    7.4   0.5    3.4  4  DUF4508          Domain of unknown function (DUF4508)


Domain annotation for each model (and alignments):
>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.1   1.9e-25   2.8e-22       2     108 ..      12     116 ..      11     117 .. 0.93
   2 !   80.1   0.0   8.3e-26   1.2e-22       2     108 ..     126     231 ..     125     232 .. 0.95
   3 ?   -2.1   0.0       2.8   4.2e+03       5      37 ..     543     575 ..     541     600 .. 0.78

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 1.9e-25
                 HHHHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT.HHHHHHHHHHHHHHHHHHTTCHTTSS-HHHHHTTSHHHHHHH CS
          CH   2 eqkkellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnks.efkkleNinlaldvaekklgvpkvlieaedlvegknksvltl 99 
                 +q+k++++W+n +l +  ++ +v+d+ +d++DGv+L++Ll++l  +++   + +++ +++k+eN+nlald+++   g+++++i+aed+v+g+ k vl+l
  CCE27993.1  12 VQQKTFTKWLNTKLVS--RGLEVKDLVKDFSDGVMLIHLLESLSSETLGRYASKPKlRVQKFENANLALDFIK-CRGIQLTNIGAEDIVDGNRKIVLGL 107
                 699***********88..67788********************99998887777778*************999.************************* PP

                 HHHHHHHHH CS
          CH 100 laqLfrafq 108
                 +++L+++f 
  CCE27993.1 108 IWTLILRFT 116
                 *****9986 PP

  == domain 2  score: 80.1 bits;  conditional E-value: 8.3e-26
                 HHHHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTTHHHHHHHHHHHHHHHHHHTTCHTTSS-HHHHHT...TSHHHHH CS
          CH   2 eqkkellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnksefkkleNinlaldvaekklgvpkvlieaedlve...gknksvl 97 
                 ++k+ ll W++++++++ + v+v+df+ +++DG+++c+Ll+ ++p+l+d+++l  ++ +++ N++la+d+a++++g+p++l ++ed+ +   ++++s +
  CCE27993.1 126 SAKEGLLLWCQRKTACY-DEVEVRDFSASWNDGLAFCALLDIHRPDLIDFEAL--DKSDHRGNMQLAFDIAHEEIGIPRLL-DVEDVCDvpkPDERSLM 220
                 6899************9.9999*******************************..79************************.********888888*** PP

                 HHHHHHHHHHH CS
          CH  98 tllaqLfrafq 108
                 t++a  f+af+
  CCE27993.1 221 TYIAYWFHAFS 231
                 ****9998875 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHH CS
          CH   5 kellrWinshleeagpkvkvedfeedlrDGvlL 37 
                 ++++r++ +++e+++  ++v + +   +DG  +
  CCE27993.1 543 EQFIRFMVDVTEDQNTAEQVFQSFREVADGKPY 575
                 678999999999998888887666777777665 PP

>> EFhand_Ca_insen  Ca2+ insensitive EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.1   7.8e-28   1.2e-24       1      67 [.     555     624 ..     555     626 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 7.8e-28
                      G-STHHHHHCHHHHHCTTSSSEEHHHHHHH-TTCHH.HHHHCCSEEE-STT....S-TTEEECCCHTTTT CS
  EFhand_Ca_insen   1 dvdsaeqveeaFralaggKpYvTeedLrrellpeqa.eylierMpeysgpe..gdavekayDYvsFleal 67 
                      d+++aeqv+++Fr++a+gKpYvTe+dLr++l+p+++ + l+e Mp ++gp+  +d+ ++++DY+sF+e++
       CCE27993.1 555 DQNTAEQVFQSFREVADGKPYVTEMDLRHSLVPDEViDKLVEIMPSHKGPDmsQDRGQPQFDYISFMEKM 624
                      89**********************************************9999999*************98 PP

>> CAMSAP_CH  CAMSAP CH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     1e-05     0.016       7      66 ..      26      82 ..      21     100 .. 0.68
   2 !   31.7   0.0   6.9e-11     1e-07       3      84 ..     137     211 ..     135     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1e-05
   CAMSAP_CH  7 lplippvedllrdlsdGvaLaalihfYcPqliklediclkesmsladslyNiqllqefce 66
                +++  +v+dl++d+sdGv L  l++ +  +++    +  k+++ ++ + +N +l+ +f++
  CCE27993.1 26 VSRGLEVKDLVKDFSDGVMLIHLLESLSSETL--GRYASKPKLRVQ-KFENANLALDFIK 82
                667789******************99988876..335545555543.4556666666655 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 6.9e-11
   CAMSAP_CH   3 serslplippvedllrdlsdGvaLaalihfYcPqliklediclkesmsladslyNiqllqefcerkLgnsvfhl.tleDllyv 84 
                 +++  ++  +v+d+  ++ dG+a +al+   +P+li++      e ++ +d   N+ql+++ +++++g+  + l ++eD+ +v
  CCE27993.1 137 RKTACYDEVEVRDFSASWNDGLAFCALLDIHRPDLIDF------EALDKSDHRGNMQLAFDIAHEEIGI--PRLlDVEDVCDV 211
                 5666677889****************************......8999******************954..444499999876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.2   1.1e+04      18      28 ..     366     376 ..     366     379 .. 0.82
   2 !   21.5   0.1   9.7e-08   0.00015       1      31 []     489     518 ..     489     518 .. 0.94
   3 ?   -1.5   0.1       2.3   3.5e+03      15      26 ..     538     549 ..     525     552 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.2
   EF-hand_6  18 daeElrkalrk 28 
                 ++ ++++alrk
  CCE27993.1 366 TIRDIKNALRK 376
                 678999***95 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 9.7e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 e++++F++fD+d++++++  E+ +al  +lg
  CCE27993.1 489 EFESVFRHFDRDNSNSLHELEFGAALA-SLG 518
                 699***********************9.776 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.3
   EF-hand_6  15 GkidaeElrkal 26 
                  ++++e++++++
  CCE27993.1 538 DEVTFEQFIRFM 549
                 489999999987 PP

>> CH_2  CH-like domain in sperm protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.9e-06      0.01       3      94 ..      19     111 ..      17     113 .. 0.87
   2 ?    1.6   0.0       0.2   2.9e+02      13      53 ..     146     186 ..     132     195 .. 0.83
   3 ?    0.5   0.0      0.44   6.6e+02      39      86 ..     524     569 ..     492     572 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.9e-06
        CH_2   3 kWlqs..ldlsrsvknlkrdfsdGvlvAeilkkyypklvdlhnysngssla.aklnNWetLekvlkklgiklskelieevasekpgaaeklLsel 94 
                 kWl++  ++   +vk+l +dfsdGv++ ++l+ +  +   l +y ++ +l+ +k +N ++   ++k  gi+l++  +e+++ ++++ +  l+ +l
  CCE27993.1  19 KWLNTklVSRGLEVKDLVKDFSDGVMLIHLLESLSSE--TLGRYASKPKLRvQKFENANLALDFIKCRGIQLTNIGAEDIVDGNRKIVLGLIWTL 111
                 8***97666677899*********************9..999**99988873678887777999999***************9999988777665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.2
        CH_2  13 svknlkrdfsdGvlvAeilkkyypklvdlhnysngsslaak 53 
                 +v++++    dG+++  +l  + p l+d+++ ++++   ++
  CCE27993.1 146 EVRDFSASWNDGLAFCALLDIHRPDLIDFEALDKSDHRGNM 186
                 5677888888********************99998776655 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.44
        CH_2  39 vdlhnysngsslaaklnNWetLekvlkklgiklskelieevasekpga 86 
                  ++h y  ++s  +    +e++ +++  ++++ +++++e+v ++ +++
  CCE27993.1 524 DEMHDYFMETSKGQDEVTFEQFIRFM--VDVTEDQNTAEQVFQSFREV 569
                 68999999999999999999999998..78888888888888776665 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.8   2.3e-06    0.0034       3      70 ..     489     549 ..     487     550 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.3e-06
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 + + +F+ +D+d++++l + e+  +l       + g ++s++e+ + f e  + + ++++f+ F +++
  CCE27993.1 489 EFESVFRHFDRDNSNSLHELEFGAALA------SLGLVFSEDEMHDYFME-TSKGQDEVTFEQFIRFM 549
                 56778******************9999......9*********9988888.899999********998 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.2e-05     0.018      23      48 ..     485     510 ..     473     517 .. 0.83
   2 ?    1.1   0.0      0.24   3.5e+02      10      32 ..     510     530 ..     509     532 .. 0.81
   3 ?   -0.3   0.0      0.65   9.7e+02       2      17 ..     537     552 ..     536     568 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
   EF-hand_8  23 lseeevdilfrefDtdgdGkisfeEF 48 
                 +  ee++++fr+fD+d+++ ++  EF
  CCE27993.1 485 IQLEEFESVFRHFDRDNSNSLHELEF 510
                 6679*****************99999 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.24
   EF-hand_8  10 lrrilrilglkkglseeevdilf 32 
                 +  +l++lgl   +se+e+++ f
  CCE27993.1 510 FGAALASLGLV--FSEDEMHDYF 530
                 55688999***..*****98766 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.65
   EF-hand_8   2 kgkItreelrrilril 17 
                 ++++t+e + r++  +
  CCE27993.1 537 QDEVTFEQFIRFMVDV 552
                 5789999999999443 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.4e-06     0.013       1      28 [.     489     516 ..     489     517 .. 0.93
   2 ?    0.3   0.1      0.44   6.5e+02      17      27 ..     540     550 ..     536     552 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.4e-06
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e++ +Fr+fD+D++  +   Ef ++l++
  CCE27993.1 489 EFESVFRHFDRDNSNSLHELEFGAALAS 516
                 7899********************9987 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.44
                 EEHHHHHHHHH CS
   EF-hand_1  17 IdfeEfkellk 27 
                 ++fe+f++++ 
  CCE27993.1 540 VTFEQFIRFMV 550
                 89*******96 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2         2   2.9e+03     127     172 ..     261     308 ..     232     312 .. 0.68
   2 ?   11.2   0.1   0.00017      0.26     118     178 ..     412     473 ..     366     481 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2
  Sigma70_ECF 127 dealerllsldpeqarlvelrkleGlsveEi..Aeklgvskrtverrl 172
                  +  + +ll+    q ++ +l+k+eG   +    A+++   kr  +r++
   CCE27993.1 261 EKRMRQLLEALRLQVEEWQLAKFEGTYADAKaqAKAFSSYKRGQKRDW 308
                  455566667666777888888888877665411455555577777777 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00017
  Sigma70_ECF 118 dspdelleLdealerllsldpeq.arlvelrkleGlsveEiAeklgvskrtverrlalaRaw 178
                  +  d+l  Ld+ l  +++++ +    ++e   ++ ++ +E+A +lg+ k++v+++la+  + 
   CCE27993.1 412 KLSDNLSPLDSYLVTIEAVEAKCyEANIEENDFTTYTYDELAYELGLVKSSVQKKLAFLENQ 473
                  456778889999999999665551568******************************98654 PP

>> Sipho_Gp157  Siphovirus Gp157
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.11   1.6e+02      38      89 ..     235     275 ..     205     298 .. 0.64
   2 ?    8.9   0.3   0.00097       1.5      23      85 ..     362     424 ..     342     439 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
  Sipho_Gp157  38 eieeKaeniakviknleaeaeaikeeekrLaerkkslenkaenLKeyleeam 89 
                  ++e+   ++ k+++n++   e+  + ekr+ ++ ++l             + 
   CCE27993.1 235 KVENAGRRVEKFVSNMQGAWEMQSAYEKRMRQLLEALR-----------LQV 275
                  55555555666666666666666666666666555544...........333 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00097
  Sipho_Gp157  23 eeeeeikdtLesleeeieeKaeniakviknleaeaeaikeeekrLaerkkslenkaenLKeyl 85 
                    +e+i d+ ++l++++++Ka   a+ +k ++  +++++ e +    + k+l  ++  L +yl
   CCE27993.1 362 LINETIRDIKNALRKSFADKANDFAMALKTMQLAISGLDGEVEDQWHHVKKLSDNLSPLDSYL 424
                  23346666668888************************9998877777777777666666665 PP

>> FliG_N  FliG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.8   2.7e+03      54      81 ..     243     270 ..     229     273 .. 0.85
   2 ?    8.8   0.1    0.0015       2.3      22      64 ..     462     504 ..     459     542 .. 0.78
   3 ?   -0.7   0.0       1.4   2.1e+03      46      67 ..     555     576 ..     537     582 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.8
                 HHHHHHHHHCCCCHHCHHHHHHHHHHHH CS
      FliG_N  54 leefleeleaqeylseggeeyarelLek 81 
                 +e+f++ ++ + ++ +  e+ +r+lLe+
  CCE27993.1 243 VEKFVSNMQGAWEMQSAYEKRMRQLLEA 270
                 6899999999999999999999999986 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0015
                 HHHTTSXHHHHHHHHHHHHCHTTXXHHHHHHHHHHHHHHHHCC CS
      FliG_N  22 evlkhLdeeeiekltkeiaslksvskeeveaVleefleeleaq 64 
                  v k+L   e + +++++ +l  ++ ee e+V+++f  + +++
  CCE27993.1 462 SVQKKLAFLENQMVARSMTNLTPIQLEEFESVFRHFDRDNSNS 504
                 567888888999************************9876554 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.4
                 XHHHHHHHHHHHHHHHHCCCCH CS
      FliG_N  46 skeeveaVleefleeleaqeyl 67 
                 +++++e+V++ f+e +  + y+
  CCE27993.1 555 DQNTAEQVFQSFREVADGKPYV 576
                 5779999999999988877666 PP

>> DUF4508  Domain of unknown function (DUF4508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.11   1.6e+02      12      41 ..       7      38 ..       6      54 .. 0.85
   2 ?    7.4   0.5    0.0035       5.3       4      34 ..     220     263 ..     217     286 .. 0.70
   3 ?   -2.6   0.0       4.4   6.6e+03      34      75 ..     462     503 ..     448     508 .. 0.57
   4 ?   -2.9   0.0       5.6   8.3e+03      19      41 ..     542     565 ..     527     573 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.11
     DUF4508 12 kewselqredFlevlveklvkk..kvngllds 41
                + w ++q+++F + l +klv++  +v+ l++ 
  CCE27993.1  7 QRWVNVQQKTFTKWLNTKLVSRglEVKDLVKD 38
                679****************9997877777765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0035
     DUF4508   4 lryvlqWfkewselqredFlevlveklvkk.............k 34 
                 + y+  Wf+ +s++++ +     vek+v++             +
  CCE27993.1 220 MTYIAYWFHAFSQMEKVENAGRRVEKFVSNmqgawemqsayekR 263
                 89**************9888888888877755555544553333 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.4
     DUF4508  34 kvnglldsleslevqdkplslfqCrlklfneWfekWseeekn 75 
                  v++ l+ le+  v    ++l   +l+ f++ f+++ +++ n
  CCE27993.1 462 SVQKKLAFLENQMVARSMTNLTPIQLEEFESVFRHFDRDNSN 503
                 344444444554555555555555666666666555555555 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 5.6
     DUF4508  19 redFlevlveklvkk.kvngllds 41 
                  e+F++ +v+ + ++ +++++++s
  CCE27993.1 542 FEQFIRFMVDVTEDQnTAEQVFQS 565
                 467888888877665455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1000  (0.0557756); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.38
# Mc/sec: 5204.23
//
Query:       CCE27994.1  [L=250]
Description: related to ribosomal protein L19, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-11   44.8   0.0    3.6e-11   43.0   0.0    1.8  2  Ribosomal_L19  Ribosomal protein L19
  ------ inclusion threshold ------
      0.019   15.0   0.1      0.036   14.1   0.1    1.4  1  Talin_middle   Talin, middle domain


Domain annotation for each model (and alignments):
>> Ribosomal_L19  Ribosomal protein L19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.29   2.6e+03      54      76 ..      41      62 ..      26      69 .. 0.74
   2 !   43.0   0.0   4.1e-15   3.6e-11      40     102 ..     119     183 ..      98     190 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.29
  Ribosomal_L19 54 setftvRkisegvgvervfplhs 76
                   +  +t+R+ ++   ve+ f+++s
     CCE27994.1 41 QDALTIRQRIDRLRVEK-FQVYS 62
                   56678888888888887.45544 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 4.1e-15
  Ribosomal_L19  40 afeGvviarkgkgisetftvRkisegvgvervfplhspkiekievv..rrgkvrrakLyYLrelk 102
                     f Gv i+ ++kgi++ + +R    ++gve  f+++sp+++ i++v  r ++ rra++ Y+r+ k
     CCE27994.1 119 PFPGVFIQIRRKGIDTAIQLRGQLMNTGVEMWFKIYSPSVKGIDIVwrRPKRARRARVTYMRKPK 183
                    699*****************************************99767799**********865 PP

>> Talin_middle  Talin, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1     4e-06     0.036      14      71 ..      21      78 ..      12      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4e-06
  Talin_middle 14 eaiqeaeeeldkpaelpalgdDaaskrwreetldqarqnvssqlaAmtaataqlvslt 71
                  ++ + a++ l++  e+p+ ++Da + r r ++l +++ +v s+  +++aa  + +  +
    CCE27994.1 21 RQQRLAQRGLATAVEAPPASQDALTIRQRIDRLRVEKFQVYSHAQTIQAAHPEPMAAL 78
                  55677999*****************************************977766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2179.46
//
Query:       CCE27995.1  [L=393]
Description: uncharacterized protein CPUR_01469 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.096   13.1   0.1       0.36   11.3   0.0    2.0  2  DUF2218   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2218  Uncharacterized protein conserved in bacteria (DUF2218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.26   4.6e+03      19      38 ..     151     170 ..     145     181 .. 0.62
   2 ?   11.3   0.0     2e-05      0.36      50      87 ..     338     376 ..     313     377 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.26
                 HTTTSSEEEE-SSEEEEE-S CS
     DUF2218  19 Hfshkveverdedagriefp 38 
                 H+ ++v    ++ ++++ + 
  CCE27995.1 151 HWDKTVRLAATQGHVNVILA 170
                 66666555555555555444 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 2e-05
                 EEEEEEEESSHHHHHHHHHHHHHHHHHTSTTS.S---B- CS
     DUF2218  50 aLtlrveaedaeslarlkavvarhLerfafre.eleveW 87 
                 +L  ++  e+a+sl+ + +v+++hL +fa +  + + +W
  CCE27995.1 338 KLAQEILGEEAASLSPIVEVLESHLHKFASKSeRRTAVW 376
                 6777888999*******************9876788888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3294.71
//
Query:       CCE27996.1  [L=370]
Description: uncharacterized protein CPUR_01470 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-68  229.9   0.3    5.9e-68  229.4   0.3    1.2  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.4   0.3   3.3e-72   5.9e-68       2     294 .]      37     335 ..      36     335 .. 0.92

  Alignments for each domain:
  == domain 1  score: 229.4 bits;  conditional E-value: 3.3e-72
                 GGCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHH CS
        PALP   2 tlgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvall 97 
                 t++ig+TPl+rl++ls+++g++++ K E++np+gS+KdR+a y++++++e     ++ tvve+++GN+g++lA++++  G+k++i++p++ s++k++ll
  CCE27996.1  37 TGAIGNTPLIRLNKLSEQTGCEVLGKAEFMNPGGSIKDRAALYVVKDAEERgllHPGGTVVEGTAGNTGIGLAHVCRSRGYKLVIYMPNTQSQGKIDLL 135
                 789********************************************88888*********************************************** PP

                 HHTT-EEEEECCH.HHHHHHH...HHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHH.HSTT-EEEEE CS
        PALP  98 rllGaevvevggd.ydeavaa...aaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglke.rrpdvrvigv 190
                 rllGaev  v+   +d+ +++   a++ a++ e+a++++qfdn ++  +  +t+g+Ei++q+ g +da+ +++G+Gg++aGi ++lk+ ++++v+++ +
  CCE27996.1 136 RLLGAEVYPVPAVaFDNPENYnhqARRHAESLENAVWTNQFDNTANRRAhIETTGPEIWAQTEGTVDAFTCATGTGGTLAGITRYLKDvSGGKVKCFLA 234
                 **********6665666666655677788888********************************************************99999****** PP

                 EECTTCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTCEEEE CS
        PALP 191 epegsdalarslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkegdrvv 289
                 +p   + l++++  g  +   ++++i +g++ g++++   + + +l+d    + de  +e++ +   +eg+ ++ ssa ++ a+  + a++l++g +vv
  CCE27996.1 235 DPP-GSVLHSYITSGGKLVERTGSSITEGIGQGRVTDNLQPDI-DLLDGSLHIADEKSIEMVYRCLDEEGLYLGASSALNVVAA-KEVAEKLGGGHKVV 330
                 **9.5667777778888888889**********4444444444.56666888********************************.************** PP

                 EEE-B CS
        PALP 290 viltg 294
                 ++l++
  CCE27996.1 331 TVLCD 335
                 ***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2641.66
//
Query:       CCE27997.1  [L=290]
Description: related to enoyl-CoA hydratase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-73  247.1   0.0      2e-73  246.8   0.0    1.0  1  ECH_1     Enoyl-CoA hydratase/isomerase
    6.4e-33  114.7   0.5    6.2e-30  104.8   0.2    2.0  2  ECH_2     Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
       0.21   11.4   1.2         21    5.0   0.1    2.8  2  Lipase_3  Lipase (class 3)


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.8   0.0   3.3e-77     2e-73       5     249 ..      44     288 ..      41     290 .] 0.97

  Alignments for each domain:
  == domain 1  score: 246.8 bits;  conditional E-value: 3.3e-77
                 TEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHCHHHHHHHCCHHHHHHHHH.HSSSEEEEEE-SEEETH CS
       ECH_1   5 gvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeekakqallkeevlelwtkly.tvpkpviaavnGaaigG 102
                 gv +++l+rP+a Nal+  l++El++al +l+ ++   +++LtG+ kaFaaGad+kema+    + + + +++ e w++l+ +++kp+iaav G+a+gG
  CCE27997.1  44 GVGQVTLHRPKAYNALCTPLIDELNDALTDLNASEDTSVIILTGSSKAFAAGADIKEMANL--TFSEAYTKSFIESWSLLTtQIKKPIIAAVAGHALGG 140
                 899*********************************************************7..89************9986379*************** PP

                 HHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSE.EESGGGHHHHHHHHHHHHHHSCHHHHHH CS
       ECH_1 103 GlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdk.vvpeeqlleealelaeklaekspaalrq 200
                 G+ela++cD++++ ++a+fg++e+klG+ipg gg+q+l+r++GkskA+e++l+gk++s++ea+++G+  + +++++++++e+l+ a  +a  s+ a+++
  CCE27997.1 141 GCELAMMCDMIYCTKDANFGQPEIKLGTIPGGGGSQRLTRAIGKSKAMELILTGKSFSGAEAEQWGVAARtFDSHADMMQETLKTAVTIAGYSRVAVQA 239
                 *******************************************************************87526778************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH---- CS
       ECH_1 201 lkealnakledalaeqleaeaklfestfskddikeGlqaflEkrkpefe 249
                  ke +n+  +  l  ++e+e+++f+s+f + d k G++af+ k kpe+ 
  CCE27997.1 240 CKEVVNKSQDLPLRDGVEFERRVFHSLFGSRDQKIGMNAFAKKEKPEWS 288
                 ************************************************7 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.2     1e-33   6.2e-30       2     175 ..      46     215 ..      45     225 .. 0.91
   2 !    9.4   0.0   0.00011      0.68     247     319 ..     220     289 ..     213     290 .] 0.88

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 1e-33
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEET CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmG 100
                 g +tL rpka NaL ++++++l++al++ ++++++++++l+g++ kaf AG D++++++   +++ +  + f e ++l  l  +++kp++a + G ++G
  CCE27997.1  46 GQVTLHRPKAYNALCTPLIDELNDALTDLNASEDTSVIILTGSS-KAFAAGADIKEMANLTFSEAYT--KSFIESWSL--LTTQIKKPIIAAVAGHALG 139
                 789***************************************66.***************9998766..477777776..567899************* PP

                 HHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GG CS
       ECH_2 101 gGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpse 175
                 gG+ l++ + +   t+++ f  PE+++G +P  Ggs  L+r+ g + ++ l lTG++++ga+a + g+a   ++s+
  CCE27997.1 140 GGCELAMMCDMIYCTKDANFGQPEIKLGTIPGGGGSQRLTRAIGkSKAMELILTGKSFSGAEAEQWGVAARTFDSH 215
                 *****************************************976477999*******************9999876 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTTS-------SS CS
       ECH_2 247 ewakktletlkkrsPtslkvtleqlrrgrklsslaevlrmElrlalrllaekDfveGvrallvdkdkkPkWkp 319
                 +   kt+ t++  s ++++++ e ++++++l  l++  + E r+ ++l+ + D   G +a    k++kP+W++
  CCE27997.1 220 QETLKTAVTIAGYSRVAVQACKEVVNKSQDLP-LRDGVEFERRVFHSLFGSRDQKIGMNAF--AKKEKPEWSH 289
                 44557788999********************7.*************************997..6999****97 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1    0.0045        27      57      82 ..     120     148 ..      30     169 .. 0.75
   2 ?    5.0   0.1    0.0035        21      53      80 ..     176     203 ..     172     253 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0045
                 HHHHHTT-.EEEEEEEETHHHH..HHHHH CS
    Lipase_3  57 rllekype.ysivvtGHSLGga..lAlLa 82 
                  l ++ ++ +  +v+GH LGg+  lA+++
  CCE27997.1 120 LLTTQIKKpIIAAVAGHALGGGceLAMMC 148
                 444555542455799*****983345554 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0035
                 HHHHHHHHHTT-EEEEEEEETHHHHHHH CS
    Lipase_3  53 kelkrllekypeysivvtGHSLGgalAl 80 
                 + l r + k + +++++tG S+ ga A 
  CCE27997.1 176 QRLTRAIGKSKAMELILTGKSFSGAEAE 203
                 578999999****************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2309.44
//
Query:       CCE27998.1  [L=849]
Description: uncharacterized protein CPUR_01472 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-05   23.9   0.1    2.8e-05   23.9   0.1    1.9  2  SH3_9     Variant SH3 domain
    0.00018   21.1   0.0    0.00037   20.1   0.0    1.5  1  SH3_1     SH3 domain


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.3      0.97   8.7e+03      27      43 ..     552     570 ..     547     570 .. 0.75
   2 !   23.9   0.1   3.1e-09   2.8e-05       7      48 ..     803     844 ..     800     845 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.97
       SH3_9  27 sedgWlegs..ltGrtGlv 43 
                 ++d ++++   ++G +G++
  CCE27998.1 552 TNDCYWRCDvcNEGDWGFC 570
                 5677777776689999985 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 3.1e-09
       SH3_9   7 preddeLsLqrGDvitvieesedgWlegsltGrtGlvPanyv 48 
                 + ++deL +++G  i+  e+ +++W+ g++ G +Gl+P  yv
  CCE27998.1 803 AGCEDELLFPKGAEIREVEDVNGDWFSGTYMGAKGLFPGPYV 844
                 7799***********************************999 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.1e-08   0.00037       8      47 ..     802     840 ..     800     841 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.1e-08
                 XSS.TTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEE CS
       SH3_1   8 aee.sdELsfkkGDviivleksedgWwkgrlkgtgkeGliP 47 
                 +   +dEL f kG +i  +e+++++W+ g ++  g +Gl+P
  CCE27998.1 802 QAGcEDELLFPKGAEIREVEDVNGDWFSGTYM--GAKGLFP 840
                 44459***************************..58***** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1662  (0.092699); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.05u 0.34s 00:00:01.39 Elapsed: 00:00:00.46
# Mc/sec: 5563.04
//
Query:       CCE27999.1  [L=320]
Description: uncharacterized protein CPUR_01473 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2463.72
//
Query:       CCE28000.1  [L=959]
Description: uncharacterized protein CPUR_01474 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (959 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.38
# Mc/sec: 7589.45
//
Query:       CCE28001.1  [L=122]
Description: probable protein CGRA (conserved fungal nucleolar protein) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-32  109.7  31.0      1e-31  109.5  31.0    1.1  1  Cgr1        Cgr1 family
  ------ inclusion threshold ------
       0.91    8.1   4.2          1    7.9   4.2    1.0  1  Prismane    Prismane/CO dehydrogenase family
        2.9    7.6  12.8        3.1    7.5  12.8    1.0  1  RR_TM4-6    Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> Cgr1  Cgr1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5  31.0   1.7e-35     1e-31       3     107 ..      23     121 ..      21     122 .] 0.98

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 1.7e-35
        Cgr1   3 gkrvsGksWkteKkafrsksskkkkkkkkswekrqekrkkakaiKklekeLkdekeaerqrrieaikerrkakeEkeRleelaakmhakkveRlkrrek 101
                 g+r++Gk+W+++Kkafr++++       +++ekr+++r+++ ++K++ekeLkd+ke++r+++i++i+err++keE+eR+e++a+ mh+k+veRlkr+ek
  CCE28001.1  23 GMRKNGKQWHEPKKAFRPTKG------LTTYEKRTKERAAMLQMKAKEKELKDDKEQARKEKIDKIRERRAKKEERERYEKMAETMHRKRVERLKRKEK 115
                 89*****************99......89********************************************************************** PP

        Cgr1 102 Rnkklk 107
                 Rnk+++
  CCE28001.1 116 RNKLIN 121
                 ****99 PP

>> Prismane  Prismane/CO dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   4.2   0.00017         1      38     112 ..      41     116 ..      36     122 .] 0.87

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHHCHHHHHHHHHCHTSTT.TB-SHHHHHHHHHHHHCHHHCCSSHHHHHHHHCCHHHCGGGS-SSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    Prismane  38 lkgaaahaahareladtliakalfktltn.vnfddekklkrlaealgieeelkdieelaakvaevaledlskeene 112
                 +kg+ ++ ++ +e a  l +ka+ k+l++  +  +++k+++++e+ + +ee ++ e++a+ +++  +e+l+++e++
  CCE28001.1  41 TKGLTTYEKRTKERAAMLQMKAKEKELKDdKEQARKEKIDKIRERRAKKEERERYEKMAETMHRKRVERLKRKEKR 116
                 68999*****************999987526778899*********************************998643 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  12.8   0.00053       3.1      46     144 ..      20     115 ..       3     122 .] 0.43

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00053
                 XXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXX CS
    RR_TM4-6  46 dvfgldlkkeggqykvvakkseagLgDlseteaeesptpelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkk 144
                 + +g+ ++ ++ +    a  +++gL+   + + e+++   l+ k +e+e +++++++++e + ++++++ a+++e+e+ ek  e+ ++++ e+ ++k+k
  CCE28001.1  20 KPLGMRKNGKQWHEPKKAFRPTKGLTTYEKRTKERAA--MLQMKAKEKELKDDKEQARKE-KIDKIRERRAKKEERERYEKMAETMHRKRVERLKRKEK 115
                 4456543333333334456677788887777777774..333333332222222222222.22222333333333333333322333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3191  (0.17798); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 905.20
//
Query:       CCE28002.1  [L=376]
Description: uncharacterized protein CPUR_01476 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0035   16.7   2.7     0.0046   16.3   2.7    1.2  1  DUF4407          Domain of unknown function (DUF4407)
     0.0042   16.7   0.2      0.038   13.6   0.2    2.0  2  Glyco_trans_4_5  Glycosyl-transferase family 4
  ------ inclusion threshold ------
      0.021   15.2   1.7      0.021   15.2   1.7    2.2  3  ZapB             Cell division protein ZapB
      0.026   14.6   1.0       0.67   10.0   0.3    2.2  2  DUF1664          Protein of unknown function (DUF1664)
      0.027   13.3   1.2      0.041   12.8   1.2    1.2  1  Spc7             Spc7 kinetochore protein
      0.038   13.7   0.7      0.072   12.8   0.7    1.4  1  DotU             Type VI secretion system protein DotU
      0.042   14.1   0.4        0.1   12.8   0.2    1.8  1  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
      0.077   13.1   0.5       0.13   12.3   0.5    1.4  1  DUF4337          Domain of unknown function (DUF4337)
      0.088   11.6   0.0       0.12   11.1   0.0    1.3  1  DUF2207          Predicted membrane protein (DUF2207)
       0.09   12.3   2.4        3.8    6.9   2.4    2.3  1  WASH_WAHD        WAHD domain of WASH complex
      0.093   12.5   1.2        0.4   10.5   1.4    2.1  2  DivIC            Septum formation initiator
        0.1   12.9   4.3       0.57   10.5   4.3    2.2  1  DUF3619          Protein of unknown function (DUF3619)
       0.11   12.3   2.3       0.26   11.1   0.1    2.1  2  DUF1819          Putative inner membrane protein (DUF1819)
       0.13   12.3   2.1       0.27   11.3   1.3    2.0  1  Med9             RNA polymerase II transcription mediator com
       0.38    9.8   5.0       0.56    9.3   5.0    1.2  1  CCDC144C         CCDC144C protein coiled-coil region


Domain annotation for each model (and alignments):
>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   2.7   3.9e-06    0.0046     131     294 ..     141     309 ..      84     312 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.9e-06
     DUF4407 131 ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaela.elkakldatarlaalraelaeleaerak 228
                 ++ +++ l++ + +l++  ++  +rld+++  + + ++ t   ++t  +G  ++ +   +  d++ ++l+ ++ ++l+a+ r+++++a++a+l++++++
  CCE28002.1 141 ASLRTDGLKQSLLDLNSFSTTMTKRLDDTYYSVLERMS-TLERTITSLQGLAQISHDICNTFDKQARDLEsDIIRQLSAAGRFDEKQARIAGLQKRIHE 238
                 45556666666667888888888888888888885555.678888899999999999999999999998735778888999999999999999999998 PP

     DUF4407 229 eraasqaaaaaddGl...larlealdrltkeda..tallarlllfllflaiellPvlvKllspkgayDrll 294
                 +r++ +a a+  d +    +r+e  d+ ++e++   + +++ ++++l l++  l++ vK +s+ ++ Dr +
  CCE28002.1 239 ARDRVAALASRVDEVqrtVERWEQADKRWQERTrkRLKIIWSATTVLALIVLALVIGVKYASGGNESDRGV 309
                 88887776666555422289999999999998899999999999999999999**************9965 PP

>> Glyco_trans_4_5  Glycosyl-transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.33     4e+02      29      78 ..     105     156 ..     101     176 .. 0.71
   2 !   13.6   0.2   3.2e-05     0.038     105     156 ..     236     287 ..     221     297 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.33
  Glyco_trans_4_5  29 rsvgaevvvltlskkgg.llkeladrgikvleakaeelfkla.lkaDlvvln 78 
                       s+g   + +  ++++g l++   +r++++l +++++++++  lk  l+ ln
       CCE28002.1 105 SSSGSRRTSIPAHSENGcLEESKLEREARLLLEQGQASLRTDgLKQSLLDLN 156
                      566766666666666664888899************9999742555555555 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.2e-05
  Glyco_trans_4_5 105 ihenrreYfdiakkldkvkklvflsesqaeqWktrteeelikkksktavvel 156
                      ihe+r      a ++d+v++ v+  e + ++W++rt+++l++  s t+v++l
       CCE28002.1 236 IHEARDRVAALASRVDEVQRTVERWEQADKRWQERTRKRLKIIWSATTVLAL 287
                      9************99********************************99987 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       7.9   9.4e+03      34      48 ..     125     139 ..     123     151 .. 0.68
   2 ?   -1.8   0.0       3.6   4.3e+03      12      31 ..     169     188 ..     161     210 .. 0.69
   3 ?   15.2   1.7   1.8e-05     0.021      19      64 ..     228     273 ..     226     278 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.9
        ZapB  34 neelkeenreleeen 48 
                  ++l++e+r l e+ 
  CCE28002.1 125 ESKLEREARLLLEQG 139
                 466777777776554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.6
        ZapB  12 kiqkaidtitlLqmeieeLk 31 
                  + + ++++++L   i  L+
  CCE28002.1 169 TYYSVLERMSTLERTITSLQ 188
                 55555666666655555555 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 1.8e-05
        ZapB  19 titlLqmeieeLkeeneelkeenreleeeneqlkeereawqerlkk 64 
                 +i+ Lq++i e + ++++l+++ +e+++ +e+ ++  + wqer +k
  CCE28002.1 228 RIAGLQKRIHEARDRVAALASRVDEVQRTVERWEQADKRWQERTRK 273
                 6889**************************************9877 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1      0.03        36      39      96 ..     155     212 ..     149     218 .. 0.85
   2 ?   10.0   0.3   0.00056      0.67      58     115 ..     202     262 ..     188     270 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.03
     DUF1664  39 lsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredl 96 
                 l+++ ++++k+l++ + s+ +    L++ i +++   + + +i +  +++  ++++d+
  CCE28002.1 155 LNSFSTTMTKRLDDTYYSVLERMSTLERTITSLQGLAQISHDICNTFDKQARDLESDI 212
                 6778899999****99999999999999999999988888888888888887777765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00056
     DUF1664  58 aatkrhLssridr.v..dkkldeqkeiskeikeevtevredlseigedvesvkeavegles 115
                  ++ r+L+s+i r +    + de ++ ++ +++ ++e+r+ ++++ + v++v+++ve +e+
  CCE28002.1 202 DKQARDLESDIIRqLsaAGRFDEKQARIAGLQKRIHEARDRVAALASRVDEVQRTVERWEQ 262
                 4555666665432131145789999999*****************************9986 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.2   3.4e-05     0.041     163     264 ..     164     271 ..     142     286 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.4e-05
        Spc7 163 eeldellpeleeekaeleeeleklqe....aaeelesid..keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaer 255
                 + ld+ + ++ e+ ++le+++++lq      ++ +++ d    +Le+   +  ++    +ek++++a lq+++ e ++++++l+++ +e++  +++ e+
  CCE28002.1 164 KRLDDTYYSVLERMSTLERTITSLQGlaqiSHDICNTFDkqARDLESDIIRQLSAAGRFDEKQARIAGLQKRIHEARDRVAALASRVDEVQRTVERWEQ 262
                 456666777777777777777777773333233333333223345444444444455566677777777777777777777777777777766665444 PP

        Spc7 256 vleeckgws 264
                   ++ ++ +
  CCE28002.1 263 ADKRWQERT 271
                 444333333 PP

>> DotU  Type VI secretion system protein DotU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.7     6e-05     0.072     138     204 ..     233     298 ..     219     299 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6e-05
        DotU 138 eeelealrqrlyeeirrlrgeaeealsphwqagdeaarrllrrelp.lwvilalallvllllflglsy 204
                 ++++++ r+r+++  +  r ++ ++  ++w++ d++ +++ r++l+ +w ++++++l++l+l +g +y
  CCE28002.1 233 QKRIHEARDRVAALAS--RVDEVQRTVERWEQADKRWQERTRKRLKiIWSATTVLALIVLALVIGVKY 298
                 2356666666665555..333444477888888888888888899988***********999999887 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   8.6e-05       0.1      13      84 ..     176     247 ..     164     262 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.6e-05
  TMF_TATA_bd  13 lverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlL 84 
                   ++ l+ +i +l+g  + +++ ++++ ++ ++++++i++ ++   + +e++++++ l+k++ e ++r  +l 
   CCE28002.1 176 RMSTLERTITSLQGLAQISHDICNTFDKQARDLESDIIRQLSAAGRFDEKQARIAGLQKRIHEARDRVAALA 247
                  46677899********************************************************99988765 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   0.00011      0.13      67     119 ..     220     287 ..     198     300 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
     DUF4337  67 k....aeelaaavdkkiakykkkiarykkekkeikkkAkeleaerdeaneasdk...........fdl 119
                 +    +++  a  +k+i + ++++a  +++ +e+++  +++e++ ++++e++ k            +l
  CCE28002.1 220 GrfdeKQARIAGLQKRIHEARDRVAALASRVDEVQRTVERWEQADKRWQERTRKrlkiiwsattvLAL 287
                 233357777888999************************************99988887433333333 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.12     188     231 ..     256     299 ..     154     351 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
     DUF2207 188 eilkeeqkntreraarlslallillilllillllllllllikll 231
                 ++++ eq+ +r ++++++   +i++++ +++l++l+l++ +k+ 
  CCE28002.1 256 TVERWEQADKRWQERTRKRLKIIWSATTVLALIVLALVIGVKYA 299
                 33344444666666666666666666666666666666666643 PP

>> WASH_WAHD  WAHD domain of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.4    0.0032       3.8      14      70 ..     175     234 ..     171     266 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0032
   WASH_WAHD  14 rreEtieqaadaLeyLnkvlndvfgridarvernrekl.qai..neRveiaqakiaklke 70 
                  r  t+e+++ +L+ L ++++d+ + +d++  +    +  ++    R    qa+ia l++
  CCE28002.1 175 ERMSTLERTITSLQGLAQISHDICNTFDKQARDLESDIiRQLsaAGRFDEKQARIAGLQK 234
                 566788888888888888888887777776655443321222113455555555554443 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0        10   1.2e+04      19      37 ..     170     188 ..     169     189 .. 0.61
   2 ?   10.5   1.4   0.00034       0.4      17      67 ..     227     277 ..     213     288 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 10
                 HHHHHHHHHHHHHHHHHHH CS
       DivIC  19 ykqlkqeiaalqaelaklk 37 
                 y+++ + + +l++++ +l+
  CCE28002.1 170 YYSVLERMSTLERTITSLQ 188
                 6666666666666666654 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00034
                 XHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXX CS
       DivIC  17 laykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerARselgl 67 
                  ++  l++ i++  + +a+l  + +e ++ v+++++ + + +er R++l  
  CCE28002.1 227 ARIAGLQKRIHEARDRVAALASRVDEVQRTVERWEQADKRWQERTRKRLKI 277
                 556667788888888888888888888888888888999999999999876 PP

>> DUF3619  Protein of unknown function (DUF3619)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.3   0.00047      0.57       4      90 ..     192     290 ..     190     307 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00047
     DUF3619   4 rfArkvaaaLdegaadlpediaeRLaaA........ReqAlarkkpeaaaravaaalalagagaslt.lgeee...agswlrrlalalpllalvvgLvg 90 
                 ++ +++++  d++a+dl++di + L+aA        R + l+++ +ea  r++a a+ +   + ++  +++++   +++  +rl+ ++++ ++++++v+
  CCE28002.1 192 QISHDICNTFDKQARDLESDIIRQLSAAgrfdekqaRIAGLQKRIHEARDRVAALASRVDEVQRTVErWEQADkrwQERTRKRLKIIWSATTVLALIVL 290
                 678999999****************88633332222555565555444444444444444444444464444456533333344444444333322211 PP

>> DUF1819  Putative inner membrane protein (DUF1819)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00022      0.26      10      70 ..     125     185 ..     121     198 .. 0.90
   2 ?    0.6   0.4      0.37   4.4e+02     131     146 ..     261     276 ..     253     284 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
                 ----HHHHHHHHHHHHH---HHHHHHHHHTS-TT--------HHHHHHHHHHHTTS-HHHH CS
     DUF1819  10 gsfllaEsrkvaelllegkseaeirekaleeNifqkrtesrakriasevirRlklLdeell 70 
                 +s l +E r ++e+ + +  ++ +++ +l+ N f+    +r+ +++  v++R+++L ++  
  CCE28002.1 125 ESKLEREARLLLEQGQASLRTDGLKQSLLDLNSFSTTMTKRLDDTYYSVLERMSTLERTIT 185
                 667889**************************************************77654 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.37
                 -TTS----HHHHHHHH CS
     DUF1819 131 sekvaswsdstikKLk 146
                 ++  ++w++ t+k+Lk
  CCE28002.1 261 EQADKRWQERTRKRLK 276
                 444568*********8 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.3   0.00023      0.27      24      69 ..     225     274 ..     185     279 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00023
        Med9  24 letktgelrhkLkkarelirelpg....idrsveeqeaeieeleeqlakK 69 
                  ++ +++l++++ +ar  ++ l      ++r+ve +e+  +  +e+ +k+
  CCE28002.1 225 KQARIAGLQKRIHEARDRVAALASrvdeVQRTVERWEQADKRWQERTRKR 274
                 4568999*************99999999*********9877776666655 PP

>> CCDC144C  CCDC144C protein coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.0   0.00047      0.56     146     259 ..     145     258 ..     125     277 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00047
    CCDC144C 146 nevLsqqLskaeskansLenelhetrdaLrektlllesvqrdlsqaqcqikeleqmyqneeekvnkyiakqesleerlaqlqsenmlLrqqLedaqnka 244
                  + L+q L   +s + ++ + l +t  ++ e+   le++   l+   +   ++ ++  ++ + ++  i +q s+  r+ + q + + L++ + +a++++
  CCE28002.1 145 TDGLKQSLLDLNSFSTTMTKRLDDTYYSVLERMSTLERTITSLQGLAQISHDICNTFDKQARDLESDIIRQLSAAGRFDEKQARIAGLQKRIHEARDRV 243
                 56799***************************************999999************************************************* PP

    CCDC144C 245 dakekvvidiqdqfq 259
                  a    v ++q+ ++
  CCE28002.1 244 AALASRVDEVQRTVE 258
                 ***999999998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1301  (0.072564); expected 358.6 (0.02)
Passed bias filter:                      826  (0.0460706); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 2607.64
//
Query:       CCE28003.1  [L=922]
Description: uncharacterized protein CPUR_01477 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.1e-128  429.0   5.0   1.5e-128  428.6   5.0    1.2  1  DUF3818     Domain of unknown function in PX-proteins (DUF381
    4.2e-39  133.5   1.1    8.1e-39  132.6   1.1    1.5  1  PXB         PX-associated
    1.1e-15   57.6   0.1    5.8e-15   55.3   0.0    2.3  2  PX          PX domain
  ------ inclusion threshold ------
      0.052   13.4   0.1      0.052   13.4   0.1    1.7  2  Myc_N       Myc amino-terminal region


Domain annotation for each model (and alignments):
>> DUF3818  Domain of unknown function in PX-proteins (DUF3818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.6   5.0  3.4e-132  1.5e-128       1     339 []     434     769 ..     434     769 .. 0.99

  Alignments for each domain:
  == domain 1  score: 428.6 bits;  conditional E-value: 3.4e-132
     DUF3818   1 gLsklfeeikekesieelspelkkliewarielAstlyqvFvgsdnsselfaqlkrlhklmPYfllkqiLritNpmaimkglldLfLaqPfggrsLlqr 99 
                 gL+ lf+eikek +i++ls +++k++ew+rie+A+++y+vF+++dns+elfaq+kr+h+l+PY++lk+++ri+Np+a+m+g+ld+fLaqPfg+rsL+qr
  CCE28003.1 434 GLTMLFKEIKEKGTIQDLSLRYQKFAEWLRIEVAAVIYHVFLAEDNSPELFAQAKRIHSLIPYTVLKNVIRIANPAAVMSGVLDIFLAQPFGARSLMQR 532
                 7999*********************************************************************************************** PP

     DUF3818 100 ifstilnedlkelekeikelekkidkseelieklkkfveaseeeqeeireeseeekldllvvilrseel..pklskeqleeviesykaykeakkeeksa 196
                 ifs +ln+++k+++k+i++l +ki  ++++++klk +++a+e+ +  ir e+eee++dl+v+ilrs+ l  ++l+ +q++++ ++y a+++a+++    
  CCE28003.1 533 IFSLTLNDGIKSFQKSIDALTNKIA-DPVFTDKLKLYTNADEDLKASIRLEAEEENIDLIVAILRSDLLepKELTGDQVQRLYNAYVAFNNAVEN---- 626
                 *************************.*****************************************99999******************99888.... PP

     DUF3818 197 sekeenedaelfedlkellklylrerDkellikllqepelsellkdiitifyeplvrvykaanisdalkdfqkFlndliklveklkneeqesdpanvvq 295
                  ++e +++a+lf++lk+llkl++r+rDk ++ +l++ep++++l++d++tifyeplvrvyk+an++ +++df+ F++d+ik+vek ++++ ++dp+++vq
  CCE28003.1 627 VDEELKQGAQLFSYLKQLLKLCTRQRDKVMMLQLIEEPVTLNLFRDLFTIFYEPLVRVYKSANVYSSVTDFAVFVDDMIKVVEKCREQDASADPNQTVQ 725
                 999********************************************************************************99999977******** PP

     DUF3818 296 afidLvdrhedsfykFvhevyvkdeelfdelikWiekilkflre 339
                 afidL++rhe++fykFvhev+++d++lf +l+ Wie il+flr+
  CCE28003.1 726 AFIDLCQRHEHNFYKFVHEVHTHDNGLFTQLMGWIEGILEFLRH 769
                 ******************************************95 PP

>> PXB  PX-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   1.1   1.8e-42   8.1e-39       3     129 ..      53     176 ..      51     177 .. 0.94

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 1.8e-42
         PXB   3 seLtplqehyLkkiLihlelykElealkdpdalsklGyPFkseekekkekkeaesselPllrfllrefvltfPfl.kalpkefWqdkvqpfleslaean 100
                 ++Lt +qehyLk++Li+ +++ E+++l++p+al+++G+PF+se+ e     + ++selP+lrf++ ++v  fPfl ka++kefWqdk+q+fles+a + 
  CCE28003.1  53 QALTGKQEHYLKRELISKQVKWEISELNSPTALQRFGAPFRSEHGE----VSPQESELPILRFIFVHHVRDFPFLdKAKEKEFWQDKLQVFLESFAGKR 147
                 78***************************************96533....335678*******************989999****************** PP

         PXB 101 lSesydkgeltkrkklatklskllellvr 129
                 +S+s+d+ e tkr+kla k++kl+el++ 
  CCE28003.1 148 VSSSEDRLEETKRRKLAIKAQKLVELMMV 176
                 **************************986 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   1.3e-18   5.8e-15       4     111 ..     227     394 ..     224     396 .. 0.94
   2 ?   -2.6   0.1       1.2   5.3e+03      82     106 ..     632     656 ..     618     659 .. 0.80

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 1.3e-18
                 EEEEEEEEEEETTSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSS.............................. CS
          PX   4 aqvsvleretsgskkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsv.............................. 72 
                  q+sv ++   +++kh  +l +++ k +  e+ v RrY dF +Lh++L+ + p++++PplPkk+  ++                               
  CCE28003.1 227 RQISVKRNI--RQHKHAEFLLRIKQKGE-LEHFVGRRYGDFAKLHKRLKTELPGRILPPLPKKNKSSTTtsalwtgwsnaddsdassvssvstrrtgnr 322
                 566666655..67999********9986.***********************************88777****************************** PP

                 .................................CTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHH CS
          PX  73 .................................rkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFLe 111
                                                  + +   + e++r +L ++L++ll++p+  n+ +++eFL+
  CCE28003.1 323 pgstrsihssktprisvdsklslglsadkkdsgDDSVVLWRESQRVSLRSFLRSLLHNPQVANTAAMQEFLS 394
                 ******************************98888888899*****************************96 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHTSCHHHHSHHH CS
          PX  82 krrkgLeeyLqrllnhpelrnsevl 106
                 k+ ++L +yL++ll+    ++++v+
  CCE28003.1 632 KQGAQLFSYLKQLLKLCTRQRDKVM 656
                 67889999****9998776666665 PP

>> Myc_N  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       1.5   6.5e+03     145     182 ..     323     360 ..     284     422 .. 0.57
   2 ?   13.4   0.1   1.2e-05     0.052     203     282 ..     822     899 ..     797     920 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.5
       Myc_N 145 assasrersgsaaaarlsaallqdlktsasecvdpsvv 182
                   s+++ +s+++ + +++++l+  l++ ++++ d svv
  CCE28003.1 323 PGSTRSIHSSKTPRISVDSKLSLGLSADKKDSGDDSVV 360
                 22223333444444444555555555555555555554 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.2e-05
       Myc_N 203 laldppasssssasaassssssdskalssseedvlsesdeeeeeeeeeeeeidVVtvekrrssskrkevstlttalsssr 282
                 +a++  a+ s+ a ++ +  ssd     ++ e+++ ++d+++e e ee++e+d +  e+rr ++k+      ++a ++++
  CCE28003.1 822 MAAEGQAPGSIGAVGNMQFDSSDFGLNGQDLEEMTYDDDDDSEAEAEEDDELDPIQAERRRRAKKQDRL--RRSAGEPAK 899
                 222233334567777888888888888888899999999999999****************88775443..233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (922 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 6543.87
//
Query:       CCE28004.1  [L=638]
Description: probable succinate dehydrogenase (ubiquinone) flavoprotein precursor, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.7e-124  415.5   4.2   3.5e-124  415.1   4.2    1.1  1  FAD_binding_2   FAD binding domain
    2.4e-43  147.2   0.1    3.7e-43  146.6   0.1    1.3  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
    1.3e-05   24.6   1.0     0.0029   16.9   0.4    2.8  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    9.5e-05   21.7   0.2      0.095   11.9   0.1    2.3  2  Thi4            Thi4 family
    0.00013   21.2   0.8      0.045   12.8   1.9    2.2  2  GIDA            Glucose inhibited division protein A
     0.0011   18.2   0.6      0.003   16.9   0.1    1.9  2  FAD_binding_3   FAD binding domain
  ------ inclusion threshold ------
       0.17   11.4   1.8       0.31   10.6   1.8    1.6  1  DAO             FAD dependent oxidoreductase
       0.22   11.6   0.0       0.52   10.3   0.0    1.6  1  DUF600          Protein of unknown function, DUF600
       0.25   10.0   0.6       0.96    8.1   0.3    2.0  2  HI0933_like     HI0933-like protein


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  415.1   4.2  1.8e-127  3.5e-124       1     417 []      53     448 ..      53     448 .. 0.99

  Alignments for each domain:
  == domain 1  score: 415.1 bits;  conditional E-value: 1.8e-127
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    D++V+G+G+AGL+AA  +aeaG ++a+++k ++++++t+++qGgi+a+l +++     +d++++h++dt+k++d+l+dq+++++++++ap+ + eL
     CCE28004.1  53 DALVVGAGGAGLRAAFGLAEAGFNTACISKLFPTRSHTVAAQGGINAAL-GNM----HEDDWRWHMYDTVKGSDWLGDQDAIHYMTREAPASIIEL 143
                    89***********************************************.776....3589*********************************** PP

                    HHTT----BCCTSSB-EEE-TT-SST.......EEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTT CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsat.......artlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesg 185
                    e++g+pfsrte+g++++r +Gg+s++        r+++ aad+      tghall++l+ + +++++ f+ +++a++Li++dg+++G+ + n+e+g
     CCE28004.1 144 EHYGCPFSRTEEGKIYQRAFGGQSREfgkggqaYRCCA-AADR------TGHALLHTLYGQSLAHNTNFFIEYFALDLIMQDGECRGVLAYNQEDG 232
                    ********************************999999.****......*********************************************** PP

                    CEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-EEE-TT CS
  FAD_binding_2 186 revrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkd 281
                    + +r+ a+++vlatgG+gr          a++++t+a+++tGdg a+++rag++ +d  +e+vqfhPt+++    g+g+Lite++rgeGg+l++++
     CCE28004.1 233 TLHRFLANNTVLATGGYGR----------AYFSCTSAHTCTGDGMAMVARAGLPNQD--LEFVQFHPTGIY----GAGCLITEGARGEGGYLLNSE 312
                    *******************..........*************************999..************....********************* PP

                    SSBTH.......GGGS-HHHHHHHHH.HHHHTTTS....CCBEEEE-TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTTSEEE.......EE CS
  FAD_binding_2 282 GrrFm.......nelasrdvvsrailekeiaeggs....eanvyldashgldaegleatleaineeaangldkdfgrgidpadrpipgpfyavkvv 366
                    G+rFm       ++lasrdvvsr+++  ei+eg++    ++++yl +sh l+ae l+++l++i e+a  +++      +d +++pip       v 
     CCE28004.1 313 GERFMeryaptaKDLASRDVVSRSMT-MEIREGRGvgpeKDHIYLQLSH-LPAEVLAERLPGISETAGIFAG------VDVRKQPIP-------VL 393
                    **************************.**********************.**********************......*********.......** PP

                    EEEEEES-EEEBETTSBE....STTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 367 paqhytmgGvetdengrv....ldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    p++hy+mgG++t ++g+v    ++ +++++pGL+A+Ge+a+++vhganrlg+nsl
     CCE28004.1 394 PTVHYNMGGIPTRYTGEVltvdDKGNDKVVPGLFACGEAASVSVHGANRLGANSL 448
                    ********************999999***************************98 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.6   0.1   1.8e-46   3.7e-43       1     128 []     503     638 .]     503     638 .] 0.97

  Alignments for each domain:
  == domain 1  score: 146.6 bits;  conditional E-value: 1.8e-46
                     .HHHHHHHHHHSSSSB-HHHHHHHHHHHHHHHHHHTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-SEETTT-S CS
  Succ_DH_flav_C   1 rkeLgkimqkkvgvfRteegLkealkelkelrerlknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHaredfperdDenwl 95 
                     r +++k+mq++v+vfRt+e+L+e++++++++   +k+++++d+s+++N++lve+lel+nll++A ++a+sA aRkESrGaHaredfperdD++w+
      CCE28004.1 503 RLAMQKAMQTDVSVFRTQESLDEGVRKMNAIDPMFKEIGIKDRSMIWNSDLVETLELRNLLTCASQTAVSAAARKESRGAHAREDFPERDDKQWM 597
                     568******************************************************************************************** PP

                     EEEEE...TT-SS-EEEEEE--GGG-........-S---SS CS
  Succ_DH_flav_C  96 khtlasldaakeeveleyepveletl........kpkeRsY 128
                     khtl+ +++ +++v+l+y+ v  +tl        +p +R+Y
      CCE28004.1 598 KHTLSFQKQPHGKVDLSYRGVISTTLdeneckpvPPFKRVY 638
                     *****999999********9999999999888888889988 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   1.4e-06    0.0029       2      34 ..      53      89 ..      52     265 .. 0.83
   2 !    5.1   0.0    0.0056        11     248     278 ..     401     433 ..     391     447 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve....legt 34
                 d +v+G+G AGl+aa  la+ag+++++++     + +
   CCE28004.1 53 DALVVGAGGAGLRAAFGLAEAGFNTACISklfpTRSH 89
                 779*************************655553333 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0056
                  CT-EEEETTEE.E--TTSBES.STTEEE-GGGC CS
                  xxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2 248 lglelderggi.vvdeflrtn.vpgiyaiGDva 278
                   g+++  +g +  vd++++ + vpg++a+G  a
   CCE28004.1 401 GGIPTRYTGEVlTVDDKGNDKvVPGLFACGEAA 433
                  5677766677669*****9988********999 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   4.8e-05     0.095      17      48 ..      51      81 ..      41      99 .. 0.87
   2 !    7.3   0.0    0.0012       2.4     206     233 ..     417     445 ..     405     446 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.8e-05
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEE CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvaile 48
                e D ++vGaG +GL aa+ la++ ++++a + 
  CCE28004.1 51 EYDALVVGAGGAGLRAAFGLAEA-GFNTACIS 81
                7899******************9.99988875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0012
                 HHECEEETTEEE-THHHH.HHHT-EB--S CS
        Thi4 206 kktrevvpnlyvaGmeva.evdganRmGp 233
                 k+  +vvp+l+++G +++  v+ganR+G+
  CCE28004.1 417 KGNDKVVPGLFACGEAASvSVHGANRLGA 445
                 56789*********8765379******97 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   1.9   2.3e-05     0.045       2      29 ..      54      85 ..      53     106 .. 0.78
   2 !    5.1   0.0    0.0051        10     113     169 ..     207     268 ..     168     297 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.3e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEE....E CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi....t 29
                  V+G+G AG+ AA+ +a++G++++ i     
  CCE28004.1 54 ALVVGAGGAGLRAAFGLAEAGFNTACIsklfP 85
                67**********************98844442 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0051
                 EEES-EEEEEECTTEEEEEEETTS-.....EEEECEEEE--TT-BT-EEEETTEEEESSC.TT CS
        GIDA 113 iieeeveeliveekkvkgvvtedge.....tikakavviatGtflkgkihigekelsaGr.lg 169
                 i e  + +li+++++++gv+  ++e      + a+++v+atG + ++   + + ++ +G  ++
  CCE28004.1 207 I-EYFALDLIMQDGECRGVLAYNQEdgtlhRFLANNTVLATGGYGRAYFSCTSAHTCTGDgMA 268
                 4.344556778899****98766652222246678***********99999888877776454 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.5e-06     0.003       1      37 [.      51      87 ..      51      99 .. 0.85
   2 ?   -1.9   0.0      0.78   1.6e+03      11      58 ..     287     347 ..     287     351 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.5e-06
                   EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSC CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrsttv 37
                   e+d l+VGaG aGl +a  L+eaG ++ ++ k   t 
     CCE28004.1 51 EYDALVVGAGGAGLRAAFGLAEAGFNTACISKLFPTR 87
                   5799**************************9986554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.78
                    HHHHHHHHHHHHTTHH...........EEEEESSSSSCCSS..S--EEEHHHHHHHHHTT- CS
  FAD_binding_3  11 paGlmlallLseaGvr...........vvlvekrsttvvlp..radglnqrtmellrqlGl 58 
                    p+G+  a  L + G r            +  e+++ t+++   r  +  + tme+ + +G+
     CCE28004.1 287 PTGIYGAGCLITEGARgeggyllnsegERFMERYAPTAKDLasRDVVSRSMTMEIREGRGV 347
                    7888888889999998888888888889999999999987655999999999999999998 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.8   0.00015      0.31       1      54 [.      53     107 ..      53     255 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHST CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpea 54 
                 d +++G+G +Gl +A+ La++g  ++ + k  ++ +  + +++g + ++l +  e 
  CCE28004.1  53 DALVVGAGGAGLRAAFGLAEAGfnTACISKL-FPTRSHTVAAQGGINAALGNMHED 107
                 789********************9*****99.888888899999888877433322 PP

>> DUF600  Protein of unknown function, DUF600
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00026      0.52      79     122 ..     584     627 ..     573     631 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00026
                 HHHHHHHHHSS--SEEEEEEETTS-EEEEEE----...-S-HHH CS
      DUF600  79 LreefkkeeqeaWtnltltlkksGklkieydyddllnseldsse 122
                  re+f ++++++W++ tl+++k+ + k++ +y  +++++ld+ e
  CCE28004.1 584 AREDFPERDDKQWMKHTLSFQKQPHGKVDLSYRGVISTTLDENE 627
                 5999*******************999******999999988765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.3   0.00048      0.96       2      31 ..      53      82 ..      52     109 .. 0.82
   2 ?   -1.3   0.0      0.34   6.8e+02     373     385 ..     421     433 ..     410     439 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00048
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllek 31
                 d +v+G+G AGl aA  +a++g +++ + k
   CCE28004.1 53 DALVVGAGGAGLRAAFGLAEAGFNTACISK 82
                 789******************999888766 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.34
                  TTSTTEEE-GGGB CS
  HI0933_like 373 kkvpgLffaGEvl 385
                  k vpgLf +GE  
   CCE28004.1 421 KVVPGLFACGEAA 433
                  889********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 4279.39
//
Query:       CCE28005.1  [L=330]
Description: uncharacterized protein CPUR_01479 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.058   13.7   1.5      0.058   13.7   1.5    1.9  2  Mto2_bdg  Micro-tubular organiser Mto1 C-term Mto2-binding re
       0.88   10.0   5.4        5.6    7.4   1.3    2.3  2  DUF3972   Protein of unknown function (DUF3972)
        5.7    7.1  14.5       0.26   11.4   3.3    2.8  3  bZIP_2    Basic region leucine zipper


Domain annotation for each model (and alignments):
>> Mto2_bdg  Micro-tubular organiser Mto1 C-term Mto2-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       1.4   8.6e+03      30      47 ..     110     127 ..     108     143 .. 0.54
   2 ?   13.7   1.5   9.7e-06     0.058      17      45 ..     281     309 ..     279     315 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
    Mto2_bdg  30 rLeelkaeNrlLkaeLer 47 
                 r ++ +  N++    L+ 
  CCE28005.1 110 RVKQENLDNEDTFSDLNS 127
                 555555555554444443 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 9.7e-06
    Mto2_bdg  17 reaRlldrsgarerLeelkaeNrlLkaeL 45 
                 re+++ d +   er+++l+a+Nr+Lk++ 
  CCE28005.1 281 RERARQDVQQKEERIAKLQAKNRDLKTQT 309
                 889999999999**************995 PP

>> DUF3972  Protein of unknown function (DUF3972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1    0.0096        58      18      72 ..     107     162 ..     103     164 .. 0.89
   2 ?    7.4   1.3   0.00094       5.6      80     121 ..     288     329 ..     286     330 .] 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0096
     DUF3972  18 kegklkske.eegkiyielssgakalvkrvekevvseetnsksldaefvEktigti 72 
                 k++ +k+ + +++ ++ +l+s  +  + + + +  ++   +ks++ +fv  t++ i
  CCE28005.1 107 KRKRVKQENlDNEDTFSDLNSDDERELAELADDSAKKAALNKSVTDVFVTPTTNRI 162
                 677888888899***********9999999999999989999*******9999977 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00094
     DUF3972  80 ldakdetiealknenkfLKealismqevydedkktielLqee 121
                 +++k+e i+ l+  n++LK   +  ++v  e k+ i  L ++
  CCE28005.1 288 VQQKEERIAKLQAKNRDLKTQTVYDRQVLAEAKHDIMALYQK 329
                 689****************87777777888888888888776 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2       2.4   1.4e+04      37      50 ..       7      20 ..       6      22 .. 0.60
   2 ?    3.3   0.3     0.015        88      20      39 ..     108     127 ..     106     137 .. 0.89
   3 ?   11.4   3.3   4.4e-05      0.26      20      47 ..     281     308 ..     279     313 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.4
                HHHHHHHHHHHHHH CS
      bZIP_2 37 LeeeNaqLrqkveq 50
                L +e++ L + ++q
  CCE28005.1  7 LAREKELLSEGLQQ 20
                55666777666655 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  20 RekkkakeeeleervkeLee 39 
                 R++ k+++ ++e++  +L++
  CCE28005.1 108 RKRVKQENLDNEDTFSDLNS 127
                 99************999976 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 4.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  20 RekkkakeeeleervkeLeeeNaqLrqk 47 
                 Re++++  ++ eer+ +L+++N  L+ +
  CCE28005.1 281 RERARQDVQQKEERIAKLQAKNRDLKTQ 308
                 9**********************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1269  (0.0707792); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2434.76
//
Query:       CCE28006.1  [L=389]
Description: probable endopeptidase K [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-29  102.2   9.7    7.5e-29  100.9   9.7    1.5  1  Peptidase_S8  Subtilase family
    4.6e-13   49.6   0.1    6.5e-12   46.0   0.1    2.3  1  Inhibitor_I9  Peptidase inhibitor I9


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   9.7   8.4e-33   7.5e-29       7     263 ..     144     348 ..     138     373 .. 0.83

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 8.4e-33
                   EEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SSTTSB- CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   7 avlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvldtsggs 103
                    ++DtG++ +hp+++                    +    ++ +  +++d+ng    HGth+AG+++ +        gv  ++k+++vkvl++ g+ 
    CCE28006.1 144 YIIDTGIEATHPQFE-------------------GRATFLKSFISGQNADGNG----HGTHCAGTIGSK------TYGVSKKVKLYGVKVLNDAGSG 211
                   59***********77...................3344455555556666666....*********999......99**************999988 PP

                   HH..HHHHHHHHHHHH.CT-S......EEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEE CS
                   xxxxxxxxxxxxxxxx.xxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 104 metgteliraieeaae.dkvd......vinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgay 193
                       +++i++++ +a+ ++ +      + +mslg+++s   +       a+ ++v ++gv++ ++aGNn+         +   +p++   + tvga+
    CCE28006.1 212 PY--SAIIAGMDFVAQdSRTRacpkgaIASMSLGGAYSAAVNQ------AAAALV-RSGVFLAVAAGNNN-------RDAGNTSPASEATACTVGAT 292
                   75..9***********55555*************555544444......677777.99************.......33444557777789****** PP

                   STTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 194 ttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAllls 263
                   + +++ ++fS+ G ++      di apG++i+stw   +        + s+sGTSmA+P++ag aA    
    CCE28006.1 293 DINDNRSTFSNFGRVV------DIFAPGTDILSTWIGGT--------TRSISGTSMATPHIAGLAAYFYA 348
                   ***************9......6****************........99*****************8765 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.1   7.3e-16   6.5e-12       2      81 ..      41     105 ..      40     106 .. 0.76

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 7.3e-16
                   EEEEE-TTS-HHHHHHHHHHHHH....HHHHTT..--EEEEEEESSSSSEEEEEE-GGGHHHHHTSTTEEEEEEEEEEEE CS
  Inhibitor_I9   2 YIVtfkeaakaakkassheswhqsllksvlkgedsakagilysYkilfnGfavklteeqaeklrkrpeVesVepDqsvrl 81 
                   YIV+fk++ ++ +  ++  s                +a+    Yk++fnGfa++lt++++++lr rp+Ve+Ve+D  +++
    CCE28006.1  41 YIVKFKDGISSLD-VDETLSVL--------------QAKADFVYKHAFNGFAGHLTKDELKTLRDRPDVEYVEKDALMHI 105
                   7777777655555.22222222..............4667779********************************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2824.21
//
Query:       CCE28007.1  [L=325]
Description: probable uridine-monophosphate kinase (UMP-CMP kinase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-43  147.8   0.0    7.5e-43  146.2   0.0    1.7  1  ADK              Adenylate kinase
    5.9e-33  114.2   0.1    1.2e-32  113.2   0.1    1.5  1  AAA_17           AAA domain
    1.8e-08   35.0   0.0    2.6e-08   34.5   0.0    1.2  1  AAA_18           AAA domain
    7.5e-06   26.2   0.0    1.7e-05   25.0   0.0    1.6  1  AAA_33           AAA domain
    7.5e-06   25.7   0.0    1.8e-05   24.5   0.0    1.5  1  Thymidylate_kin  Thymidylate kinase
  ------ inclusion threshold ------
      0.059   13.5   0.0       0.33   11.1   0.0    2.0  2  PAS_7            PAS fold


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.2   0.0   2.5e-46   7.5e-43       1     150 [.     127     295 ..     127     296 .. 0.89

  Alignments for each domain:
  == domain 1  score: 146.2 bits;  conditional E-value: 2.5e-46
                 EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH.HCT-HHHHHHHHHHHTTSS--HHHHHHHHHHHHHCH.....GTTT..........EEEEESB- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxx..........xxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkkyglahlstGdllRaev.ksgtelGkeakevmdkgelvpdevvvklvkeeleke.....dkkk..........gfllDGfP 83 
                 +lG+PgaGKGtq+++lv+k+g++hls+GdllRae+ + g+e G  +++++++g +vp+ev++kl+++++++      +             +fl+DGfP
  CCE28007.1 127 VLGGPGAGKGTQCSNLVEKHGFIHLSAGDLLRAEQeRPGSEFGDLIRDYIKNGLIVPKEVTIKLLENAMKEAlssqaK--AkakaagsatgRFLIDGFP 223
                 79*******************************994569**************************9999865432111..112222223336******* PP

                 SSHHHHHHHHHHHHHHTSEESEEEEEE--HHHHHHHHHT.........GSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  84 RtveqaealeelleeekvkldlvleldvpeevlveRltg.........DneetvkkRletykkqtkplidyykkkg 150
                 R+++qa ++e+    + +  ++vl  d+pe+v+ eRl++         Dn+e+++kR++t+ ++++p++dyy+k+g
  CCE28007.1 224 RKLDQAYSFEN----TVCPAKMVLFYDCPENVMEERLMErgktsgradDNAESIRKRFRTFVETSMPVVDYYEKQG 295
                 ***********....89********************************************************997 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.1     4e-36   1.2e-32       1     136 []     128     274 ..     128     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 4e-36
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTS...HSSHHHHC...TSHHHHHHHHHHHHHHHH......HHHH......HSSEEEEEE-SE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrggl...akardemr...klpleekkelqkeaaeki......aeea......kkkgvlvdghpr 81 
                 lGgPG+GKgtqc++lvek gf hlsaGdllr+e++r g+   +  rd+++    +p+e++ +l+++a+++       a  +      +++ +l+dg+pr
  CCE28007.1 128 LGGPGAGKGTQCSNLVEKHGFIHLSAGDLLRAEQERPGSefgDLIRDYIKnglIVPKEVTIKLLENAMKEAlssqakA--KakaagsATGRFLIDGFPR 224
                 7************************************95333667777775556799999999999999885655441..1334555556799999999 PP

                 EEETTEEEESSHHHHHHHH..SEEEEEE--HHHHHHHHHHH..TTST-TS-SHHHHH CS
      AAA_17  82 ikeqagfldglpkevleelkpdaiilleadpeeilerrlkd..rtrgrdddneesik 136
                   +qa         ++++++p +++l++++pe+++e+rl +  +t+gr+ddn+esi+
  CCE28007.1 225 KLDQAY---S----FENTVCPAKMVLFYDCPENVMEERLMErgKTSGRADDNAESIR 274
                 765554...2....347899************9999998875789**********97 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   8.6e-12   2.6e-08       1     126 [.     125     272 ..     125     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 8.6e-12
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf....................gvnlrdvakenglllevdpealdeskrldedkldklldaleenss..aleegknl 77 
                 +++ G pG+GK t + +L +++gf                    g+ +rd++k++ ++  +         +l e+ ++++l+   ++ +  a    +  
  CCE28007.1 125 VFVLGGPGAGKGTQCSNLVEKHGFihlsagdllraeqerpgsefGDLIRDYIKNGLIVPKEVTI------KLLENAMKEALSSQAKAKAkaAGSATGRF 217
                 7899******************99*999988888888888666666666666666655555555......44444444444444444445655667888 PP

      AAA_18  78 vidghlaeleseaakdikk......vvLtaspeelleRlekRgyeeakikeneea 126
                 +idg++ +l +++ +++         + +++++++ eRl +Rg+++ +  +n e+
  CCE28007.1 218 LIDGFPRKLDQAYSFENTVcpakmvLFYDCPENVMEERLMERGKTSGRADDNAES 272
                 **********9999988879***887789*******************9877764 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   5.8e-09   1.7e-05       1     126 [.     124     267 ..     124     283 .. 0.67

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 5.8e-09
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqskt..............dytrvl.drlyqilnelarkalsagrnvildatnls... 81 
                 +v++ G pG+GK t   +l++k+g+++ls  +l+r+  ++  +  +               +++v+ + l + ++e + + ++a++ +   at ++   
  CCE28007.1 124 VVFVLGGPGAGKGTQCSNLVEKHGFIHLSAGDLLRAEQER--PGSEfgdlirdyikngliVPKEVTiKLLENAMKEALSSQAKAKAKAAGSATGRFlid 220
                 899*****************************88866642..222234455555555555333333266778888888888888888888888666433 PP

      AAA_33  82 ..rrerarflklarrlgvpvri.vvvetdeetlkeRlakRaangddrs 126
                   +r+ ++  ++  +  +p ++ ++ +++e +++eRl +R ++++++ 
  CCE28007.1 221 gfPRKLDQAYSFE-NTVCPAKMvLFYDCPENVMEERLMERGKTSGRAD 267
                 4444444444444.4556766626779**************9985332 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     6e-09   1.8e-05       4     177 ..     130     305 ..     129     312 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 6e-09
                      STTSSHHHHHHHHHHHHHHTTE.....EEEESSSTTSHHHHHHHHHHHTCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEEEES-HHHHH CS
  Thymidylate_kin   4 lDGaGKttqaellkerlkeegik....vvltrepggteiGekirelllkeeeleeqteallfaadriehleekikpalkqgktvivdRylfSsl 93 
                        GaGK tq+ +l+e+    +++        +e  g+e+G++ir++++ +  + ++ + + ++ +  +++ ++  +a ++     + R+l+ + 
       CCE28007.1 130 GPGAGKGTQCSNLVEKHGFIHLSagdlLRAEQERPGSEFGDLIRDYIK-NGLIVPKEVTIKLLENAMKEALSSQAKAKAKAAGSATGRFLIDG- 221
                      569************84333332222356778899*************.88888888777777777777777777777888999999999976. PP

                      HHHHTTTTTTCHHHHHHGGGTTSE-SEEEEEESSHHHHHTSCCTTSS....TTTSHHHHHHHHHHHHHHHHHHHH...TTSTEEEEETTS- CS
  Thymidylate_kin  94 aYqgakegvdldlvlslnedvllkPdltflldvdpevalkRlakrde....ldeeeeeqldflrkvrerylelak...ederiliidasks 177
                          + ++  ld  +s +++v     ++++ d++++v  +Rl++r++     d++ e  ++ +r++ e  + +++   ++++++ +da+  
       CCE28007.1 222 ----FPRK--LDQAYSFENTVC-PAKMVLFYDCPENVMEERLMERGKtsgrADDNAESIRKRFRTFVETSMPVVDyyeKQGKVVKVDATPA 305
                      ....5554..677788888887.55799*******************76642222222233333333333333332114455555566655 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.42   1.3e+03      36      70 ..     163     198 ..     157     214 .. 0.67
   2 ?   11.1   0.0   0.00011      0.33      48     103 ..     256     313 ..     237     320 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.42
       PAS_7  36 qvgvpleellrynaergefgagdve.aeverrlaaa 70 
                 ++g ++ +l+r   ++g + +++v  + +e+ +++a
  CCE28007.1 163 RPGSEFGDLIRDYIKNGLIVPKEVTiKLLENAMKEA 198
                 789999999999999999997774313334444333 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00011
       PAS_7  48 naergefg..agdveaeverrlaaaragkphsfererpdgrvievrgnplpdgGfVtt 103
                 + erg+ +  a+d ++ +++r++   + + + ++  +++g+v++v ++p p+  fV t
  CCE28007.1 256 LMERGKTSgrADDNAESIRKRFRTFVETSMPVVDYYEKQGKVVKVDATPAPEAVFVKT 313
                 45677776667789999***********************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2398.06
//
Query:       CCE28008.1  [L=430]
Description: uncharacterized protein CPUR_01482 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-16   58.9   0.3    2.4e-15   56.9   0.1    2.2  2  PCI            PCI domain
    4.7e-12   45.4   0.4    1.5e-11   43.7   0.4    2.0  1  eIF3m_C_helix  eIF3 subunit M, C-terminal helix
  ------ inclusion threshold ------
      0.072   12.8   2.2       0.77    9.4   0.8    2.5  2  CR6_interact   Growth arrest and DNA-damage-inducible protein


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         1     6e+03      10      26 ..      14      41 ..      13      56 .. 0.57
   2 !   56.9   0.1   4.1e-19   2.4e-15       3     105 .]     253     354 ..     251     354 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1
                HHHTSHHHHHHHHHHH...........H CS
         PCI 10 lrsgnlsgfseelkdl...........e 26
                +++g++++  +e++++           +
  CCE28008.1 14 FVDGTFEELAKEMAEYlkadeavqlltK 41
                5667777777777777444442222222 PP

  == domain 2  score: 56.9 bits;  conditional E-value: 4.1e-19
                 HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH..CESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEETTTT CS
         PCI   3 ysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvsk..iyssislerlaklldlsvdevEkilvklIrdgeirakidqesg 99 
                 ys+ll ++ +++l++++ + +++ + +l++++l +  e+L++k+r+ ++ +v+   + + i+++++ak+l+++++ vE + +++Ir g++++k++q+++
  CCE28008.1 253 YSQLLDIFAEQDLEDYNDFNEEH-AGWLEQQKLDH--ERLHRKIRLLTFASVAAatPSREIEYAKIAKALQVPQEHVEMWAIDVIRAGLVEGKLSQQQQ 348
                 89*********************.***********..*************************************************************9 PP

                 EEEECS CS
         PCI 100 ivvfkk 105
                  + ++k
  CCE28008.1 349 KFLVHK 354
                 998875 PP

>> eIF3m_C_helix  eIF3 subunit M, C-terminal helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.4   2.6e-15   1.5e-11       1      29 []     358     386 ..     358     386 .. 0.98

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 2.6e-15
  eIF3m_C_helix   1 RvFGkeQWqeLetrLdaWksnLanVleVi 29 
                    RvFG++Q+qeL+tr d+W+++L+nVl+V+
     CCE28008.1 358 RVFGQKQYQELSTRVDHWRATLQNVLDVL 386
                    9**************************96 PP

>> CR6_interact  Growth arrest and DNA-damage-inducible proteins-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.029   1.7e+02     117     132 ..     152     167 ..     143     183 .. 0.84
   2 ?    9.4   0.8   0.00013      0.77      72     119 ..     362     409 ..     354     413 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.029
  CR6_interact 117 kleKlpqliadlkaki 132
                    leKlp++++ ++a+ 
    CCE28008.1 152 YLEKLPEWLESWEASE 167
                   699**********986 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00013
  CR6_interact  72 aerleeleaeeveeeeslakmleknrakkeekearrkaReeeiakkle 119
                   +++++el ++   ++ +l+++l+ +r++++++  +++   +++++kl+
    CCE28008.1 362 QKQYQELSTRVDHWRATLQNVLDVLRQEQANARSQKERETQDLERKLN 409
                   57999****************************999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1013  (0.0565006); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3319.55
//
Query:       CCE28009.1  [L=244]
Description: uncharacterized protein CPUR_01483 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00077   19.4   0.2    0.00077   19.4   0.2    2.3  3  zf-CCHC    Zinc knuckle
  ------ inclusion threshold ------
      0.033   14.0   0.0      0.053   13.4   0.0    1.3  1  DUF2610    Domain of unknown function (DUF2610)
      0.081   12.8   0.9       0.24   11.3   0.9    1.8  1  zf-CCHC_2  Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         3   1.8e+04      10      12 ..     153     155 ..     152     157 .. 0.79
   2 !   19.4   0.2   1.3e-07   0.00077       1      18 []     171     188 ..     171     188 .. 0.94
   3 ?   -2.1   0.0      0.84     5e+03      12      18 .]     192     198 ..     192     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 3
                 SST CS
     zf-CCHC  10 GHi 12 
                 GH+
  CCE28009.1 153 GHR 155
                 9*7 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.3e-07
                 SCTSSSSSSSSTTTTSTS CS
     zf-CCHC   1 rkCynCGepGHiardCpk 18 
                 r+C+ C + GHia dCp+
  CCE28009.1 171 RTCFLCKKKGHIALDCPN 188
                 69***************6 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.84
                 TTTTSTS CS
     zf-CCHC  12 iardCpk 18 
                 iar C++
  CCE28009.1 192 IARICKE 198
                 6999985 PP

>> DUF2610  Domain of unknown function (DUF2610)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.9e-06     0.053      31      78 ..      20      68 ..      10      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.9e-06
     DUF2610 31 lefQadWlskeRggqvpeevvesls.kLfklakennvsfeeLivyaLen 78
                l+ Qa+ l+ eR   + e+v  s+  +L +l+k+ +vs e+L++ + ++
  CCE28009.1 20 LADQARILQSERKSILQERVPASMGpNLLTLSKDDDVSYEKLCQHVADA 68
                789*********************648****************987655 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.9     4e-05      0.24       6      20 ..     173     187 ..     172     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4e-05
   zf-CCHC_2   6 ChiCgkkGHyIqdCP 20 
                 C +C+kkGH   dCP
  CCE28009.1 173 CFLCKKKGHIALDCP 187
                 *********666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1937.66
//
Query:       CCE28010.1  [L=700]
Description: related to serine/threonine-protein kinase Chk2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-77  258.3   0.0    9.2e-77  257.9   0.0    1.2  1  Pkinase          Protein kinase domain
      3e-38  131.6   0.0    3.9e-38  131.2   0.0    1.1  1  Pkinase_Tyr      Protein tyrosine kinase
      7e-15   55.1   0.1    1.5e-14   54.0   0.1    1.6  1  FHA              FHA domain
      5e-09   35.9   0.0    1.1e-08   34.8   0.0    1.4  1  Kinase-like      Kinase-like
    5.5e-06   26.6   0.0    1.5e-05   25.2   0.0    1.7  1  Yop-YscD_cpl     Inner membrane component of T3SS, cytoplasmi
    3.2e-05   22.9   0.0    6.6e-05   21.9   0.0    1.4  1  Pkinase_fungal   Fungal protein kinase
     0.0019   17.6   0.0     0.0045   16.4   0.0    1.5  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0091   15.9   0.1       0.41   10.5   0.0    2.5  2  APH              Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.029   13.9   0.1        0.2   11.2   0.0    2.1  2  YrbL-PhoP_reg    PhoP regulatory network protein YrbL
      0.042   12.8   0.1      0.062   12.3   0.1    1.1  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
      0.077   12.6   0.4        7.6    6.1   0.0    2.4  2  FTA2             Kinetochore Sim4 complex subunit FTA2
       0.18   11.5   0.0       0.33   10.6   0.0    1.4  1  DUF2961          Protein of unknown function (DUF2961)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.9   0.0   6.2e-80   9.2e-77       1     264 []     309     574 ..     309     574 .. 0.94

  Alignments for each domain:
  == domain 1  score: 257.9 bits;  conditional E-value: 6.2e-80
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslse 97 
                 y+ leklG+G f++Vy ++ek++g+ +AvK+++k    +++   + +++Ei +l +++hpn++ l+++f+e d++ylvle++ +gel++++  kg+lse
  CCE28010.1 309 YTLLEKLGKGHFAEVYLCIEKASGHRYAVKIFSKTPGVEDRSktEGLQQEIGVLMSVSHPNVLCLKDTFNERDRVYLVLELAAEGELFNYIVMKGKLSE 407
                 6789****************************99876555444599***************************************************** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH...TTSCBSHHHHHHHHHHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl...keneyskkvDvWslGvilyellt 192
                 ee++k++ q+++g++ylH+++i+HrD+KpeNiL+  e+ ++K++DFGl+k + ++s +t+ +gt+ Y+APE+l   k+++y+k+vD+WslGv++y  l+
  CCE28010.1 408 EETRKLFLQLFQGIKYLHDRNIVHRDIKPENILLTdEDLHVKLADFGLSKIIGEESFTTTLCGTPSYVAPEILadsKRRKYTKAVDIWSLGVVMYICLC 506
                 **********************************989999*********************************998889******************** PP

                 SS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 193 gkppfsgekgkekvekeldqlekilkilg.etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 g ppfs+e +++++   l+q     +i     +  +p ++++ + a+dl++++l ++p +R+t+e++l+hp+l
  CCE28010.1 507 GFPPFSDELRSQEFPYSLTQ-----QIRSgRFDYPSPYWDSVGDPALDLIDSMLVVNPDRRFTVEQCLSHPWL 574
                 ******99999988888888.....3333388999*************************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.2   0.0   2.6e-41   3.9e-38       3     223 ..     311     529 ..     309     571 .. 0.79

  Alignments for each domain:
  == domain 1  score: 131.2 bits;  conditional E-value: 2.6e-41
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  l +klG+G+f++V+ +  k + ++  vk+  Kt     +++++e l +e+ ++++++hpn++ l     +++++++v+e++++G+L +++  k   kl
   CCE28010.1 311 LLEKLGKGHFAEVYLCIEKASGHRYAVKIFSKTPG-VEDRSKTEGLQQEIGVLMSVSHPNVLCLKDTFNERDRVYLVLELAAEGELFNYIVMK--GKL 405
                  789***************95554444444445443.3445558999*********************************************98..9** PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE...EEHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk...ftsksDvWsfGvl 194
                  + +++ ++ lq+ +G++yL+++++vHrd+   N+Ll++++ +vk++DfGL++ i   +e   +++      ++apE+l ++k   +t++ D+Ws Gv+
   CCE28010.1 406 SEEETRKLFLQLFQGIKYLHDRNIVHRDIKPENILLTDEDlHVKLADFGLSKII--GEES-FTTTLCGTPSYVAPEILADSKrrkYTKAVDIWSLGVV 500
                  ************************************986549************..3333.3344455668*******9988888************* PP

                  HHHHHTTSSGTTTTS.HHHHHHHHHHTTEE CS
  Pkinase_Tyr 195 lwEiftlgespypgl.kneevleklkegkr 223
                  ++ i+  g  p+++  +++e+   l+++ r
   CCE28010.1 501 MY-ICLCGFPPFSDElRSQEFPYSLTQQIR 529
                  **.566699998876577776655554444 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.1     1e-17   1.5e-14       1      67 [.     218     285 ..     218     287 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 1e-17
                 EEEESSTTSSEETTSTTSTTTEEEEEEETT..CEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEE CS
         FHA   1 vtiGRssdcdivlddpsiSrkHalikfdkg..sgkvyleDlgSknGtfvNgqrigkgepveLksgdvie 67 
                 + iGR+++cd+v+++ ++S +H+l++ +++  +    +eDl S+nGt+vN+  +g++++ eL + d+i 
  CCE28010.1 218 YLIGRHAECDFVVKEGVVSNRHCLFFTENKgtDTVAIVEDL-SSNGTYVNEALVGRNQRRELEDQDEIA 285
                 78***********************777766789999***9.9************************96 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0     7e-12   1.1e-08     145     265 ..     410     524 ..     389     531 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 7e-12
  Kinase-like 145 arlllTlqlirlaanLqakglvhgkftvdnlll.dekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlv 239
                   r+ l lql + + +L+++ +vh +++++n+ll de+  ++l +f+     g++    + +   ++  pE+l+        ++ k+t ++d W lG+v
   CCE28010.1 410 TRK-LFLQLFQGIKYLHDRNIVHRDIKPENILLtDEDLHVKLADFGLSKIIGEESFTTTLCgtPSYVAPEILAD------SKRRKYTKAVDIWSLGVV 500
                  333.44799**********************9857899*******98888999999777776778999****99......35689************* PP

  Kinase-like 240 iyriwclklPltlateeakeewkfkl 265
                  +y   c   P+    e+ ++e+ ++l
   CCE28010.1 501 MYICLCGFPPFSD--ELRSQEFPYSL 524
                  ******9999975..44555555555 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     1e-08   1.5e-05      17      90 ..     216     296 ..     212     298 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1e-08
                   EEEEEES-TT-SEE---TTS-TT-EEEEEE...TTEEEEEE-CESS--EETTEE-SECC...--TTSEEEE.TTEEEEEEE CS
  Yop-YscD_cpl  17 gevviGsdedcDivLsDkevsrkhlkLeve...eesvrledlgsrngllvngerveele...lrpgdvlel.Gttelalvk 90 
                   g ++iG++ +cD v++   vs++h+   +e    + v + +  s ng++vn+  v + +   l+++d++++ G ++++++ 
    CCE28010.1 216 GGYLIGRHAECDFVVKEGVVSNRHCLFFTEnkgTDTVAIVEDLSSNGTYVNEALVGRNQrreLEDQDEIAVhGKARFVFRY 296
                   6799*********************9988822345689999***********9887333346*******987898888875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.4e-08   6.6e-05     315     390 ..     417     484 ..     394     505 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.4e-08
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgee 390
                       +g + L+ + +i+HrDi  +Nil+td    ++ +  L+D+ l k +++   es   +  GT+ ++a e+l +++
      CCE28010.1 417 LFQGIKYLH-DRNIVHRDIKPENILLTD----EDLHVKLADFGLSKIIGE---ESFTTTLCGTPSYVAPEILADSK 484
                     446778999.*****************5....488899***********7...5555689***********99754 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     3e-06    0.0045     112     166 ..     402     453 ..     374     460 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3e-06
         Kdo 112 waelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                   +l+ee +r+l+ ++ + i+ lh++++ H+d+ + nill  e+   +++ l D+
  CCE28010.1 402 KGKLSEEETRKLFLQLFQGIKYLHDRNIVHRDIKPENILLTDED---LHVKLADF 453
                 45588999999999**************************9987...88888888 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.069     1e+02      21      80 ..     290     346 ..     275     362 .. 0.81
   2 !   10.5   0.0   0.00028      0.41     165     195 ..     426     455 ..     380     459 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.069
                 --EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----E CS
         APH  21 gryvlrrnpparaaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgr 80 
                  r+v+r +  +    ++ +++++++lL+k+g+ + +ev+ + + + ++++ + +++  pg 
  CCE28010.1 290 ARFVFRYPQSR----HTNAFLQEYTLLEKLGKgHFAEVYLCIEKASGHRYAVKIFSKTPGV 346
                 47777777777....8999999999999999999999999889999999999999888875 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00028
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfed 195
                 ++ ++H+D++p N+l++++d +v  + Df++
  CCE28010.1 426 DRNIVHRDIKPENILLTDEDLHV-KLADFGL 455
                 6779*************888777.5666665 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.43   6.4e+02       3      23 ..     278     299 ..     277     302 .. 0.83
   2 ?   11.2   0.0   0.00013       0.2     120     156 ..     409     445 ..     392     470 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.43
  YrbL-PhoP_reg   3 Lsdeklla.kGteRlvyaHPed 23 
                    L+d++ +a +G+ R v+ +P+ 
     CCE28010.1 278 LEDQDEIAvHGKARFVFRYPQS 299
                    7888888768**********85 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00013
  YrbL-PhoP_reg 120 ltaelkeaLdefleelldnhivtndlsakNivvkkns 156
                     t +l  +L + +++l d +iv +d++++Ni++++++
     CCE28010.1 409 ETRKLFLQLFQGIKYLHDRNIVHRDIKPENILLTDED 445
                    34445556666678******************99875 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   4.2e-05     0.062     280     332 ..     413     462 ..     396     470 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.2e-05
  Pox_ser-thr_kin 280 ifLqiaLLyikiyelpdcenflhvDlkPdniLifdskekliik.vkerkyvfke 332
                      +fLq   L+  i  l+  +n +h D+kP+niL+ d++ ++++  ++ +k++ +e
       CCE28010.1 413 LFLQ---LFQGIKYLH-DRNIVHRDIKPENILLTDEDLHVKLAdFGLSKIIGEE 462
                      5554...344453444.4689************998766654314445555555 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0051       7.6      22      60 ..     307     347 ..     297     392 .. 0.76
   2 ?    4.4   0.1     0.017        25     174     204 ..     410     440 ..     394     456 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0051
        FTA2  22 kdiefleyLgkglhsiVlkv..kirgkeYALKlFrfleaee 60 
                 +++ +le Lgkg  + V+    k  g+ YA+K+F +    e
  CCE28010.1 307 QEYTLLEKLGKGHFAEVYLCieKASGHRYAVKIFSKTPGVE 347
                 78899****999888877754478899*******9884433 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.017
        FTA2 174 evsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 + + + +l + +k lh   Iv+rD+k+en++
  CCE28010.1 410 TRKLFLQLFQGIKYLHDRNIVHRDIKPENIL 440
                 55667789999*****************986 PP

>> DUF2961  Protein of unknown function (DUF2961)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00022      0.33      90     134 ..     287     331 ..     245     341 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00022
     DUF2961  90 edtlyfhaqwrrenpnekkgkeyvildvkGkGkyvgvnlavdnle 134
                 +  ++f  ++ ++++++   +ey++l+  GkG++  v+l +++ +
  CCE28010.1 287 HGKARFVFRYPQSRHTNAFLQEYTLLEKLGKGHFAEVYLCIEKAS 331
                 36788999999999999999*******************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.49
# Mc/sec: 4287.73
//
Query:       CCE28011.1  [L=1110]
Description: related to ADP-ribosylation factor (ARF) GTPase activating protein (GAP) with effector functions [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-32  112.4   0.0    4.2e-32  110.7   0.0    2.0  1  ArfGap     Putative GTPase activating protein for Arf
    2.3e-19   70.0  14.9    3.8e-19   69.3  14.9    1.2  1  BAR_3      BAR domain of APPL family
    5.7e-12   46.1   0.8    1.4e-11   44.8   0.1    2.0  2  PH         PH domain
  ------ inclusion threshold ------
      0.092   13.1   0.3        2.7    8.4   0.4    2.7  2  AAA_assoc  Domain associated at C-terminal with AAA
        2.2    8.6   5.7        3.3    8.1   1.1    3.1  2  PH_9       Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.0   1.2e-35   4.2e-32       3     115 ..     829     945 ..     827     947 .. 0.92

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 1.2e-35
                 HHHHHCC.SCCCCB-TTT.-SBS--EEETTTTEEE-HHHHHHHCCS.TTT--EEETTTS-..--HHHHHHHHHTCHHHHHHHHTTTC-TTTSG-TTCGH CS
      ArfGap   3 alkellk.epenkvCaDC.gakeptWaslnlgvflCieCsgvHrslgvhiskvrsltldk..wedeelellkalgNkkaneileaklpkeekrsksssk 97 
                  l+ +++ +++n  CaDC + ++++W+s+nlg++lCieCsg+Hrslg+hiskvrsltld   ++ + +e+l  +gN++ n i+ea+l+++ k+s+++s+
  CCE28011.1 829 LLQMVRNaDQGNCWCADCgSGSKVEWVSINLGIILCIECSGIHRSLGTHISKVRSLTLDIksFTIDIVEVLLLIGNRVSNMIWEARLDASLKPSPQASR 927
                 56677776789*******656889***********************************777************************************* PP

                 HHHHHHHHHHHTCHTTCC CS
      ArfGap  98 ekreefirakYeekkfae 115
                 e+r +fi+akY+++ +++
  CCE28011.1 928 EQRLRFITAKYVDRCYVD 945
                 ************998875 PP

>> BAR_3  BAR domain of APPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3  14.9   1.1e-22   3.8e-19       8     237 ..     302     532 ..     300     533 .. 0.92

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 1.1e-22
       BAR_3   8 kDSPkfResleevEaeleelekklkkllKlckrlieagkaysaaqkqfaqsLrelkkeskgdeetdesL.kkfsellqelenehtilldqaqrsikkpL 105
                 +D P fR++l++ E+   +++ ++kk+lK  ++    +++ ++a+ +f + Lre +  +   +  + +L + f ++ +e+  + ++   ++q+ i++pL
  CCE28011.1 302 DDGPVFRATLKALEQKTGNMRMHMKKVLKRAEQAHVQQTEANDAFVAFTDALREASSTN--ANAFQPALeHYFDRIAREILVYERQNTINLQKIIIEPL 398
                 699**************************************************988765..4455555524688888888888888889********** PP

       BAR_3 106 ekFrkedlkevkekkkkFdkesekleaalekna.qlskkkkeseleeadnelkatrkkfhqasldyvlqinel.qerkkfeiletllsfmqaqltFfhq 202
                 +k+ + d+k+++ kk++F+ es++++a +++++ q + + k+++l e+d++ +++r+ f     dy + ++ l   rk  e+l++l +++ aq++ f +
  CCE28011.1 399 NKLYQFDIKQAEFKKRDFEEESKDYYAYVSRYLgQRQDSVKAKKLAESDSKYQNKRRTFELKRFDYSNFMQDLhGGRKEQEVLSHLTRYADAQTKGFLN 497
                 ********************************934566779999*****************************44799********************* PP

       BAR_3 203 GyelfkdlepfmkeLsaqlqqlrarfeetaeekee 237
                 ++  ++d+ p ++ Ls+++q+  ++++  ++e+ee
  CCE28011.1 498 TSRKIEDYLPQLSALSNEVQEADKEYQYRRREREE 532
                 ************************99999988875 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.6   9.5e+03      43      73 ..     383     407 ..     381     421 .. 0.72
   2 !   44.8   0.1   3.8e-15   1.4e-11      16     104 ..     660     746 ..     643     747 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.6
                 SEEEEEESTTEEEEEEECTTSSSSTSEEEEE CS
          PH  43 epkgsislsncevvevvatedpkrkfcfelr 73 
                 e++++i+l+++ ++        ++ ++f ++
  CCE28011.1 383 ERQNTINLQKIIIE------PLNKLYQFDIK 407
                 67889999999998......45666666664 PP

  == domain 2  score: 44.8 bits;  conditional E-value: 3.8e-15
                 C......SEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHHHHHH CS
          PH  16 k......swkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWikaiqsai 104
                        +w+k w+vL++++l+ y+n  + k    +  i+l+ ++v+e    ++++r+fcfe++++  n   + + qa+see++++Wi +i++a+
  CCE28011.1 660 PrnlnkqGWHKFWIVLDQGKLSEYSNW-KQKLDLHMDPIDLRMASVREA---RNAERRFCFEVITP--N--FKRVYQATSEEDMNSWIVSINNAL 746
                 03444569*******************.8888888999*********95...5**********999..3..67899****************987 PP

>> AAA_assoc  Domain associated at C-terminal with AAA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.4   0.00074       2.7      21      75 ..     399     459 ..     366     473 .. 0.74
   2 ?    1.2   0.0      0.13   4.8e+02      62      94 ..     965     998 ..     947    1000 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00074
   AAA_assoc  21 spyltiviee..fdg....vkrnelYdavkaYLsskisseaarrLklskskskssslvlsl 75 
                 ++  +++i++  f++     ++ + Y+ v+ YL+++ +s +a++L  s+sk ++++ ++ l
  CCE28011.1 399 NKLYQFDIKQaeFKKrdfeEESKDYYAYVSRYLGQRQDSVKAKKLAESDSKYQNKRRTFEL 459
                 55567777642243334335899****************9999999998776665555554 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.13
   AAA_assoc  62 sksksks...sslvlslddgeevtDeFeGvklkWtl 94 
                  k  +++     ++l l+ + +v+D  +G + +W +
  CCE28011.1 965 IK--KNEiqqVLYALALRANPNVVDRMRGTHAVWLA 998
                 33..333322225899******************75 PP

>> PH_9  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.37   1.3e+03      72      98 ..     442     468 ..     402     478 .. 0.86
   2 ?    8.1   1.1   0.00091       3.3      82     115 ..     711     743 ..     659     746 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.37
        PH_9  72 aLaekasdYkkkshvFrLqtadgaeyl 98 
                  Lae+ s Y+ k   F+L+  d ++++
  CCE28011.1 442 KLAESDSKYQNKRRTFELKRFDYSNFM 468
                 58999999**********999988775 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00091
        PH_9  82 kkshvFrLqtadgaeylfqtsdakevqeWvdtiN 115
                  + + F++ t + +   +q+++++++++W+  iN
  CCE28011.1 711 ERRFCFEVITPNFKR-VYQATSEEDMNSWIVSIN 743
                 377889999988765.68***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.48
# Mc/sec: 6994.13
//
Query:       CCE28012.1  [L=1383]
Description: uncharacterized protein CPUR_01486 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-17   63.8   0.0    2.9e-17   62.8   0.0    1.5  1  C2              C2 domain
    4.2e-14   52.9   3.5    4.8e-11   43.0   3.5    2.9  1  Membr_traf_MHD  Munc13 (mammalian uncoordinated) homology dom
    1.9e-06   26.8   0.5    3.7e-06   25.8   0.5    1.5  1  DUF810          Plant family of unknown function (DUF810)
  ------ inclusion threshold ------
      0.049   13.9   0.0        2.3    8.5   0.1    2.7  2  M11L            Apoptosis regulator M11L like


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   6.5e-21   2.9e-17       2      92 ..     917    1006 ..     916    1019 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 6.5e-21
                  EEEEEEEEEESSSSSSTTSSCEEEEEEEE.ECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHH CS
          C2    2 klevtvieAknLpnkdkkgssdpyvkvsl.dgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstll 92  
                  +++++v+eA++L++ d++g sdpyv+     +k+ +kTr+i ++lnP+W+e+f + v+      +  +V+d+d+++++d +G+++++l+ l+
  CCE28012.1  917 TFTIKVVEAEDLKACDASGYSDPYVVFGDeYQKRLHKTRIIFKNLNPRWDESFDVTVQG--PVNVIATVWDHDTFGDHDYVGRTSLKLDPLH 1006
                  579************************887899************************99..788899*********************9943 PP

>> Membr_traf_MHD  Munc13 (mammalian uncoordinated) homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   3.5   1.1e-14   4.8e-11       1     148 [.    1111    1230 ..    1111    1231 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.1e-14
  Membr_traf_MHD    1 dvlrPLmdyLdsnLsilaqalektvLkrvlkelWkvvlnalekllLPplsdakskkkssslwenanaakkleslsklllsmvreevsgfeksL 93  
                      d+l +L+ y+d+n++i++q+l+++ +  v+ +lWk vl ++e+ll Pplsd+ s                                  ++ksL
      CCE28012.1 1111 DALTNLLAYFDENFAIMKQTLTEATMIAVMTRLWKEVLMTIENLLVPPLSDKPS----------------------------------TKKSL 1169
                      6899***********************************************884..................................26899 PP

  Membr_traf_MHD   94 tpkevevleaaLdtlkdfFhagGe......GlkkeaLkseelqsLllalslYdqstdeLik 148 
                        ke +v+  +Ld+l +fF a+ e      G++ e Lks+++++L     +Y +++++Li+
      CCE28012.1 1170 MRKELDVVYHWLDMLFSFFNAKDEhsgeqlGVPAEVLKSPKWHELASLNFFYFEDSNNLIR 1230
                      9******************88543333356*****************************97 PP

>> DUF810  Plant family of unknown function (DUF810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.5   8.3e-10   3.7e-06     520     686 .]     718     889 ..     704     889 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 8.3e-10
      DUF810 520 YevesvianlvkkWvkerlkklkewveraleqEtWe.....Pks...kqeryaqSavellriieetvdeffelpv...pmkeellqdLldgldkllqeY 607
                 +++e++++++v +W+++  +++ ++ve+a+++ + +     P+     +er++ S+++l+ + ++tvd  f+l+      +   + +L + + + + +Y
  CCE28012.1 718 FNIENLLVDFVWRWIHSAEARMVDFVEQAIKHDQFQvrtddPERiplDSERHSVSVIDLFMLFNQTVDTVFSLQWdndEHHARFMTALSRSIATGVGHY 816
                 89****************************99988622222443333489*************************4444445557899999******** PP

      DUF810 608 lskvasslgskeslvPs..lPaLTRckedsklkklwkkkavepclldekrksklnslgtqkLcvrLNTLhyllsqleslek 686
                 ++ v+++ ++  + + +  l a  R +++  + + +k +       +++r++    +  ++ +v+LN  +y +++l++lek
  CCE28012.1 817 CDIVEQRFAKEMDRFSEeeLAAQSRSTQEKWM-QYAKDAW----A-NKERAQP--FQFYPESFVKLNNVEYAMQELDKLEK 889
                 *****777776666653114444555554442.4444444....3.3334444..4578999*****************97 PP

>> M11L  Apoptosis regulator M11L like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00051       2.3      29      50 ..     630     651 ..     604     663 .. 0.85
   2 ?    2.0   0.0     0.051   2.3e+02      21      49 ..     803     831 ..     794     841 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00051
                 HHHHHHHHHHHHHTHHHHHHHH CS
        M11L  29 dkikksCekinndYakdlnsly 50 
                 + ++k Ce i+++Y+++++++ 
  CCE28012.1 630 KSVTKLCERIRKRYKNNMEIMQ 651
                 67899**************995 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.051
                 -HHHHHHHHHHHHHHHHHHHHTHHHHHHH CS
        M11L  21 etkerslldkikksCekinndYakdlnsl 49 
                     rs+ + + ++C+ +++++ak+++  
  CCE28012.1 803 TALSRSIATGVGHYCDIVEQRFAKEMDRF 831
                 556789999999**************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.87u 0.26s 00:00:01.12 Elapsed: 00:00:00.43
# Mc/sec: 9714.87
//
Query:       CCE28013.1  [L=581]
Description: related to 6-hydroxy-d-nicotine oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-22   78.3   2.1      9e-22   77.3   2.1    1.6  1  FAD_binding_4  FAD binding domain
    2.2e-17   63.1   0.0    4.2e-17   62.2   0.0    1.4  1  DPM2           Dolichol phosphate-mannose biosynthesis regula
  ------ inclusion threshold ------
      0.016   15.3   0.7      0.041   14.0   0.7    1.7  1  DUF4229        Protein of unknown function (DUF4229)
      0.043   13.9   0.1      0.083   13.0   0.1    1.5  1  BBE            Berberine and berberine like
      0.078   12.8   0.5       0.16   11.8   0.5    1.6  1  LapA_dom       Lipopolysaccharide assembly protein A domain
        0.2   11.1   0.0        1.2    8.5   0.0    2.0  2  DUF2290        Uncharacterized conserved protein (DUF2290)


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   2.1     3e-25     9e-22       1     138 [.     101     236 ..     101     237 .. 0.93

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 3e-25
                    EEEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEE.STTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTT CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglpvlvrGgGssll.gqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsg 95 
                    pa+ ++pes+ +v+ a+  a+ ++  + v GgG+    g++  +gg+++dl++ln+   + ++++ + v+aG ++ +++eal++ gl +    g +
     CCE28013.1 101 PACRLAPESASDVSLAVLTARVTRCAFAVKGGGHASFkGASNIQGGLTIDLRALNQ-TVVAADRREVSVGAGNVWVRVYEALKPMGLGVI--GGRV 193
                    678899****************************9998888689*******88***.5566669******************88887776..9*** PP

                    CGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  96 ipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                    +  +vGG++++++++  s++ G  +dnv ++e+vladG+++++
     CCE28013.1 194 SAIGVGGLTLGGGMSFFSNRFGWACDNVNSYEIVLADGSIRQV 236
                    ****************************************987 PP

>> DPM2  Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   1.4e-20   4.2e-17      28      76 .]     520     568 ..     519     568 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 1.4e-20
        DPM2  28 PfvdedhvlhkyflpreyairipvillvvlllfvgtFiglvlikskkkk 76 
                 Pfvd+dh+ +++flpr++airipvil++++ ++vg+F+g+v+++s++kk
  CCE28013.1 520 PFVDHDHPFQNFFLPRQWAIRIPVILVLLGSAVVGSFLGMVMVRSNRKK 568
                 9*********************************************997 PP

>> DUF4229  Protein of unknown function (DUF4229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.7   1.4e-05     0.041      24      64 ..     536     576 ..     531     580 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
     DUF4229  24 liglpvpllvaallAlvvalplSmvllkklRdrataqvaer 64 
                  +++++p+++++l ++vv   l+mv+ ++ R++a+ + a +
  CCE28013.1 536 QWAIRIPVILVLLGSAVVGSFLGMVMVRSNRKKAAKAKALA 576
                 566779****************************9876655 PP

>> BBE  Berberine and berberine like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.8e-05     0.083       2      39 ..     486     521 ..     485     525 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
                 -TTS--GGG-HHHHHHHHG.GGHHHHHHHHHHH-TT--S CS
         BBE   2 YvNyrdldlgkewgerYFg.gNferLvkvKtkyDPdNvF 39 
                 Y Ny+ +      + + +g +N+erL+ v  kyDP+  F
  CCE28013.1 486 YQNYASQKQN---VFEGYGrANLERLRTVSHKYDPEGPF 521
                 6777777777...5556787***************9766 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   5.4e-05      0.16      13      52 ..     537     575 ..     530     581 .] 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.4e-05
    LapA_dom  13 aqvelpLsllllvafgiGallgwllslwsylrlrrelrrl 52 
                 + + +p++l+ll+++++G +lg+++  +   ++  ++++l
  CCE28013.1 537 WAIRIPVILVLLGSAVVGSFLGMVMVRS-NRKKAAKAKAL 575
                 55799*****************999884.44444444444 PP

>> DUF2290  Uncharacterized conserved protein (DUF2290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00041       1.2      42      70 ..     217     245 ..     211     247 .. 0.90
   2 ?   -0.4   0.0      0.22   6.7e+02     115     145 ..     514     545 ..     508     559 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00041
     DUF2290  42 allekkkynikliDGaliqllYtlkegkl 70 
                 a+++ ++y+i+l DG++ q++Y+ + + l
  CCE28013.1 217 ACDNVNSYEIVLADGSIRQVSYQSNSSDL 245
                 688999****************9988876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.22
     DUF2290 115 Dfdpeq.fqeieHPksHltlGqvksCRipvss 145
                  +dpe  f++ +HP   + l    + Ripv  
  CCE28013.1 514 KYDPEGpFVDHDHPFQNFFLPRQWAIRIPVIL 545
                 699*999*********9999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3934.77
//
Query:       CCE28014.1  [L=1174]
Description: uncharacterized protein CPUR_01488 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 7859.71
//
Query:       CCE28015.1  [L=1064]
Description: uncharacterized protein CPUR_01489 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00035   21.1   0.0    0.00035   21.1   0.0    2.8  3  ING             Inhibitor of growth proteins N-terminal histo
     0.0066   16.5   1.0        2.2    8.4   0.3    4.1  3  HJURP_C         Holliday junction regulator protein family C-


Domain annotation for each model (and alignments):
>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   3.9e-08   0.00035       2      95 ..      54     150 ..      53     156 .. 0.87
   2 ?    0.3   0.1      0.12   1.1e+03      13      37 ..     139     163 ..     131     170 .. 0.81
   3 ?   -5.4   3.1         2   1.8e+04      46      64 ..     595     613 ..     554     641 .. 0.50

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.9e-08
                 HHHHHTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..TS..S-HHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING   2 LedyldsvenLPlelqrnltelreiDakvqellkeidskiekfl..kngslqknekeeels.riqeelkeaqelldeKiqlaqqaldlvdkhlrrLd 95 
                 ++d+ld  e LP+++ r lt++ ++D k+ e+  ++d+   ++    n + ++ +++ +l+ +i ++l++a+ +       a  +++ vd+h ++++
  CCE28015.1  54 VSDFLDFTEYLPSDVIRSLTLIGKLDEKYAEASIKLDTLTTTWGnlPNLAVEDRPSSVSLRaDISDKLDQAMSSRVYAHDEAVRMAENVDRHYNKIK 150
                 789****************************************988777778888888888999999999999988888888888888888887775 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING  13 PlelqrnltelreiDakvqellkei 37 
                  + + r++ +++ +  k+q+ +k++
  CCE28015.1 139 AENVDRHYNKIKVLKEKLQDMMKNY 163
                 5678899999999999999999887 PP

  == domain 3  score: -5.4 bits;  conditional E-value: 2
                 TS..S-HHHHHHHHHHHHH CS
         ING  46 kngslqknekeeelsriqe 64 
                 k+++ +k++k+ + ++  +
  CCE28015.1 595 KDTKDTKDTKDTQDTQDTK 613
                 2333333333333333333 PP

>> HJURP_C  Holliday junction regulator protein family C-terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.026   2.3e+02      10      34 ..      70      92 ..      64      95 .. 0.82
   2 !    8.4   0.3   0.00024       2.2      22      59 ..     144     184 ..     141     187 .. 0.79
   3 ?    0.9   0.1     0.053   4.8e+02       5      30 ..     322     347 ..     315     350 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.026
     HJURP_C 10 srprfeltprtenkYreIkeeFDkL 34
                   ++ l ++ ++kY e  ++ D L
  CCE28015.1 70 R--SLTLIGKLDEKYAEASIKLDTL 92
                4..667999**************87 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00024
     HJURP_C  22 nkYreI...keeFDkLhqkyclsspklqsntkmpvsvpVsn 59 
                  +Y++I   ke+ + ++++y    pk +   k p++v++++
  CCE28015.1 144 RHYNKIkvlKEKLQDMMKNYPTEEPKSPVMSKSPQAVRAKV 184
                 68999844459**********99999777778888887665 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.053
     HJURP_C   5 PekdisrprfeltprtenkYreIkee 30 
                 P++++ + +++ ++r+ + Yre k++
  CCE28015.1 322 PSETMVARELKALGRGPDEYREAKKK 347
                 89999999999***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1064 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2136  (0.119137); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.76u 0.40s 00:00:02.16 Elapsed: 00:00:00.55
# Mc/sec: 5846.09
//
Query:       CCE28016.1  [L=351]
Description: uncharacterized protein CPUR_01490 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2589.72
//
Query:       CCE28017.1  [L=366]
Description: uncharacterized protein CPUR_01491 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   15.1   2.3      0.073   13.6   2.3    1.9  1  zf-C2H2    Zinc finger, C2H2 type
      0.053   14.0   1.4        2.8    8.5   0.3    2.5  2  zf-H2C2_2  Zinc-finger double domain
        1.1   10.3   3.2          4    8.5   3.2    2.1  1  zf-C2H2_4  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.3   1.2e-05     0.073       2      20 ..     103     121 ..     102     124 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
                 EETTTTEEESSHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                 +C++Cgks+k+ s L++H+
  CCE28017.1 103 RCSECGKSYKHGSCLVKHL 121
                 7*****************7 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.3   0.00047       2.8      14      26 .]     101     113 ..      92     113 .. 0.79
   2 ?    3.9   0.0     0.014        82       2      12 ..     117     127 ..     117     129 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00047
   zf-H2C2_2  14 pyeCplCdkaFkt 26 
                 ++ C++C+k++k+
  CCE28017.1 101 EVRCSECGKSYKH 113
                 489********98 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.014
   zf-H2C2_2   2 LrrHirkHtge 12 
                 L++H+ +Ht+e
  CCE28017.1 117 LVKHLWEHTPE 127
                 89*******97 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.2   0.00068         4       2      23 ..     103     124 ..     102     125 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00068
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkth 23 
                 +C+ Cgks++  + L +Hl  h
  CCE28017.1 103 RCSECGKSYKHGSCLVKHLWEH 124
                 7********99999****9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2759.30
//
Query:       CCE28018.1  [L=98]
Description: uncharacterized protein CPUR_01492 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 815.57
//
Query:       CCE28019.1  [L=119]
Description: uncharacterized protein CPUR_01493 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.059   13.3   0.0      0.071   13.1   0.0    1.1  1  Noelin-1        Neurogenesis glycoprotein
      0.063   13.7   0.2      0.079   13.4   0.2    1.1  1  ThiD2           ThiD2 family
      0.087   13.2   0.1       0.11   12.8   0.1    1.3  1  Mobilization_B  Mobilization protein B
       0.71   10.2   6.6        5.3    7.4   1.0    3.0  2  Halo_GVPC       Halobacterial gas vesicle protein C (GVPC) re


Domain annotation for each model (and alignments):
>> Noelin-1  Neurogenesis glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.6e-05     0.071      20      76 ..      16      69 ..      12      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.6e-05
    Noelin-1 20 CvCtvvaPaqdvCsrDarsrqlrqllekvqnlsqsievldlRtsrdlqyvrktetll 76
                C+ t+    +  Cs  +  + + +l+  +  l++++  l + t+++++  +     +
  CCE28019.1 16 CIVTAAEHLERFCSTLPVVEDINRLVRSIDALTEQMAALRRETRQEFKTTQ---LDM 69
                9999999999**********************************9999554...333 PP

>> ThiD2  ThiD2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   1.8e-05     0.079       7      49 ..      24      66 ..      19      89 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
       ThiD2  7 lnRarEGlRvlediarfvlddeelteelkelRhelaelekele 49
                l+R+   l v+edi r v    +lte++ +lR e ++  k+++
  CCE28019.1 24 LERFCSTLPVVEDINRLVRSIDALTEQMAALRRETRQEFKTTQ 66
                7899999***************************999888733 PP

>> Mobilization_B  Mobilization protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.5e-05      0.11      12      44 ..      36      68 ..      30     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.5e-05
  Mobilization_B 12 ginelaeeieplaqsmatladearqviaevqqa 44
                     in l   i+ l++ ma+l  e+rq +  +q  
      CCE28019.1 36 DINRLVRSIDALTEQMAALRRETRQEFKTTQLD 68
                    69************************9998854 PP

>> Halo_GVPC  Halobacterial gas vesicle protein C (GVPC) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.5    0.0084        38      16      25 ..      56      65 ..      37      67 .. 0.69
   2 ?    7.4   1.0    0.0012       5.3       7      17 ..      68      78 ..      66      78 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0084
   Halo_GVPC 16 datqdaFeaY 25
                ++t+++F ++
  CCE28019.1 56 RETRQEFKTT 65
                6788888876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0012
   Halo_GVPC  7 aIaafreefda 17
                ++aaf+eef+a
  CCE28019.1 68 DMAAFQEEFRA 78
                799******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      822  (0.0458475); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 962.82
//
Query:       CCE28020.1  [L=175]
Description: uncharacterized protein CPUR_01494 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0003   21.7   0.4    0.00059   20.8   0.2    1.6  2  Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
  ------ inclusion threshold ------
       0.11   12.3   0.5       0.33   10.8   0.2    1.9  2  WVELL           WVELL protein


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   6.6e-08   0.00059       1      88 [.      17     106 ..      17     113 .. 0.82
   2 ?   -1.9   0.0      0.77   6.9e+03      42      42 ..     137     137 ..     109     168 .. 0.58

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 6.6e-08
  Myb_DNA-bind_3   1 eWspeeekilvdllveqvkkgnriekktfk..keawkeileefna.ktgakytkkqlknrlkklrkeyklvkellersgfsWDpttktvtA 88 
                     +Ws ee+ +l++ll+e  + +   +++  +  ++  +  +  f + + + + + k+++nr+  lr  +++ ++   r+g ++++ + +++ 
      CCE28020.1  17 RWSTEETLLLLELLLEARRDQQF-NNERIStvRDVLRGFVPIFSSeFPHRQWNVKAIENRWIWLRSIWQAFRAAEARPGTTYNDLSGMLQM 106
                     5**************99665544.34433311567888888888889999999*******************************9999875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.77
  Myb_DNA-bind_3  42 n 42 
                     +
      CCE28020.1 137 R 137
                     1 PP

>> WVELL  WVELL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   3.7e-05      0.33      23      46 ..      76      99 ..      65     128 .. 0.73
   2 ?   -1.6   0.0      0.27   2.5e+03      40      51 ..     148     159 ..     128     172 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.7e-05
       WVELL 23 rtWvElLweDFestyAkaGreYkG 46
                  W+  +w+ F ++ A+ G +Y+ 
  CCE28020.1 76 WIWLRSIWQAFRAAEARPGTTYND 99
                469*******************74 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.27
       WVELL  40 aGreYkGkevte 51 
                 a + Y  k +t+
  CCE28020.1 148 ACHAYTVKWTTK 159
                 344444444454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1281.39
//
Query:       CCE28021.1  [L=144]
Description: uncharacterized protein CPUR_01495 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1068.27
//
Query:       CCE28022.1  [L=177]
Description: uncharacterized protein CPUR_01496 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1433.35
//
Query:       CCE28023.1  [L=167]
Description: uncharacterized protein CPUR_01497 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1303.76
//
Query:       CCE28024.1  [L=130]
Description: uncharacterized protein CPUR_01498 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0008   18.8   0.0     0.0011   18.3   0.0    1.1  1  Lactonase  Lactonase, 7-bladed beta-propeller


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.4e-08    0.0011     151     181 ..      20      51 ..      17      61 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.4e-08
                 -TTSSEEEEEETTTTEEEEEEE.-TTS-.EEE CS
   Lactonase 151 dpdgkfllvpDLGtDrvrvykldkatgk.lte 181
                 + +++f lvpDLG+D+++v++++k tg  lt+
  CCE28024.1  20 TSHHSFTLVPDLGADKIHVFAINKPTGLkLTA 51 
                 557899****************9887633665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1047.90
//
Query:       CCE28025.1  [L=413]
Description: uncharacterized protein CPUR_01499 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-84  283.0   0.0    8.9e-84  281.7   0.0    1.6  2  Lactonase  Lactonase, 7-bladed beta-propeller


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.11   2.1e+03      95     111 ..      23      38 ..      14      48 .. 0.58
   2 !  281.7   0.0     5e-88   8.9e-84      32     340 ..      68     404 ..      61     409 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.11
                 TTSSEEEEEETTTTEEE CS
   Lactonase  95 edgkllavAnYsggsvs 111
                 +   +l+v++Ysg++ +
  CCE28025.1  23 QASGFLYVSSYSGNT-T 38 
                 444577777775443.3 PP

  == domain 2  score: 281.7 bits;  conditional E-value: 5e-88
                 EEEESS---SEEE-TTSSEEEEEET.S..TTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE.-TTSSEEEEEETTTTEEEEEEB.TTSEBESECE. CS
   Lactonase  32 lvaelenPsyLalspdgktlYavnetg..eeggvsafaidkdsgeltllnkvssegaspchlsv.dedgkllavAnYsggsvsvfpldadgslkeasq. 126
                 +  + ++Ps+L+l++++ +l++v+e     +g++s+fa +++ g l+ l+kvs+ g+++  + + + +++ lavA+Ys g++++++++++++l+ +++ 
  CCE28025.1  68 TNGCAGSPSWLTLDRTKPVLFCVDEGLttAKGSLSSFATSAH-GDLRRLDKVSTLGGPVSGVMYgKGQKRGLAVAHYSPGALTTWDVSDPSHLSLVQTd 165
                 46799********************7799***********98.***********88888766651567899*********************9999886 PP

                 EEE.....SSTTT-SSTTEEEEEE-TTSSEEEEEETTTTEEEEEEE.-TT.S-EEEEEEEE-STT--EEEEEE-T..TSSEEEEEETTTTEEEEE..EE CS
   Lactonase 127 vlkhegsgpnperqesphaHsvvldpdgkfllvpDLGtDrvrvykldkat.gkltepasvklppgsGPRHlaFhp..dgkiaYvvnELsstvsvf..sy 220
                 ++k   +gpnp+rq ++haH++ ldp+g+f+lvpDLG+D+++vy++ k t  klt+ + ++++pgsGPRH++F     ++++Y+v+EL++t++ +  +y
  CCE28025.1 166 QYKIARPGPNPDRQGASHAHEAFLDPTGSFILVPDLGADKIHVYAIRKPTdLKLTALPPIRVKPGSGPRHITFAVrhGKTFMYLVTELANTITGYqvTY 264
                 8888888***************************************7655156999*****************875469****************9899 PP

                 E-TTTEEEEEEEEESS-T.S.S-S---EEEEEE-TTSSEEEEEETS..................STEEEEEEE-TTT--EEEEEEEE-SSS.--EEEE- CS
   Lactonase 221 deatgaleelqtvstlpe.g.ftgknsaaeIrlspdgkflyvSnRg..................adsiavfavdeadgtltlveevstegkfPRdfald 299
                   a  +++el t+ t+ + + +   ++aaeI++spd +fl vS+R                   +d ++ f++d ++gtlt++++v+++g+fPR+f+++
  CCE28025.1 265 RRASVQFRELFTIGTHGAgNpVPSGAAAAEIAVSPDANFLIVSSRNentlsipnfdpknstriiSDPLINFSIDGDTGTLTKIQQVPCGGRFPRQFSIN 363
                 99999***********9962577778************************************************************************* PP

                 TTSSEEEEEETTTTEEEEEEEETTTTEEEEESEEEESSSEE CS
   Lactonase 300 psgklllvanqksdnvtvferdaetGkLtelgkdievgepv 340
                 ++g+ll+va+q++++v+++ rd etG+L+++ ++++++  v
  CCE28025.1 364 RAGTLLAVAQQSDGRVVIIDRDVETGRLGNFAAYANIPGQV 404
                 **********************************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3409.81
//
Query:       CCE28026.1  [L=669]
Description: uncharacterized protein CPUR_01500 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-08   32.6   7.5    6.5e-08   32.6   7.5    1.9  2  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   7.5   3.6e-12   6.5e-08       2      36 ..      78     111 ..      77     114 .. 0.95
   2 ?   -3.7   0.9       0.8   1.4e+04      19      25 ..     565     571 ..     560     574 .. 0.68

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 3.6e-12
                 S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTC CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfyses 36 
                 aC+ Cr++K++Cd  +P+C+ C +l+++C+ y+e+
  CCE28026.1  78 ACELCRSRKSRCDSIRPKCKLCTELGADCV-YREP 111
                 9*****************************.9875 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.8
                 S-HHHHH CS
     Zn_clus  19 aCsnCkk 25 
                  C +C +
  CCE28026.1 565 CCHKCLE 571
                 4999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 5302.34
//
Query:       CCE28027.1  [L=294]
Description: uncharacterized protein CPUR_01501 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2199.64
//
Query:       CCE28028.1  [L=1189]
Description: probable ROG1 Protein with putative serine active lipase domain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-42  145.1   0.0    9.2e-28   97.2   0.0    3.3  3  DUF676          Putative serine esterase (DUF676)
     0.0085   15.9   6.7     0.0085   15.9   6.7    3.4  4  Cwf_Cwc_15      Cwf15/Cwc15 cell cycle control protein
     0.0089   15.9   0.0      0.018   14.9   0.0    1.4  1  Lipase_3        Lipase (class 3)
  ------ inclusion threshold ------
      0.014   15.8   7.2      0.084   13.3   7.2    2.4  1  CENP-B_dimeris  Centromere protein B dimerisation domain
      0.021   14.2   0.0      0.036   13.4   0.0    1.2  1  DUF915          Alpha/beta hydrolase of unknown function (DUF


Domain annotation for each model (and alignments):
>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.2e-09   4.2e-06       2      34 ..     269     302 ..     268     319 .. 0.79
   2 !   17.4   0.0   6.7e-07    0.0024      35      71 ..     360     396 ..     354     401 .. 0.89
   3 !   97.2   0.0   2.6e-31   9.2e-28      77     214 ..     472     626 ..     450     630 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.2e-09
      DUF676   2 skkdhLvVlvHGlqgn.saDlelikeqlekikek 34 
                 +kk+hLv+l+HGl++n +aD+ ++ke + ++ ++
  CCE28028.1 269 KKKVHLVILTHGLHSNlGADMLYMKESIDAAARQ 302
                 799*************************996443 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 6.7e-07
      DUF676  35 lpeekieflmsennesktfkgidvlgerlaeevlevv 71 
                  ++e ++++++ +n++kt+kgi++lg+rl  ++l+++
  CCE28028.1 360 DDDEEVIVRGYPGNATKTEKGIKYLGKRLSRYILSMT 396
                 56789****************************9986 PP

  == domain 3  score: 97.2 bits;  conditional E-value: 2.6e-31
      DUF676  77 k......nkkiSfvghSlGgliaraaiaklkekemtlkeaikglepvtfitlasPhLGvlysskslinlglalleklkkslsmeqlgltGrdLflk... 166
                 +      ++ iSfvghSlGgli+++aia+++++    +++++ ++pv+fi++a+P+LG+  ++++          ++k +l+++ +g+tG+dL l+   
  CCE28028.1 472 RhcrsyqITSISFVGHSLGGLIQTYAIAYIQKHS---PKFFDLIQPVNFIAMATPFLGLSNENPL----------YVKFALDFGLVGRTGQDLGLTwra 557
                 2445555678*******************99654...4699************************..........************************ PP

      DUF676 167 ........................ddkdeknsllykllkdekdlkliealklFkrrvlyanvvndrivplas 214
                                          +++ +++ l+++l   +      alk+F++r++y+nvvnd+ivpl++
  CCE28028.1 558 ptiarigwgalvsnlgesahkkvyGESQPESKPLLRILPTGP---AHTALKKFRNRTVYSNVVNDGIVPLRT 626
                 ***********************9777777788888888888...888999*******************99 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   6.7   2.4e-06    0.0085      83     148 ..     295     365 ..     228     371 .. 0.51
   2 ?   -2.8   0.6       1.2   4.3e+03      39     114 ..     442     464 ..     414     478 .. 0.43
   3 ?   -0.6   2.5      0.25     9e+02      59     121 ..     676     735 ..     658     818 .. 0.47
   4 ?   -4.1   2.6       2.9   1.1e+04     109     127 ..    1115    1140 ..    1053    1156 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.4e-06
                 -------------------------..-----------------.......---------------------- CS
  Cwf_Cwc_15  83 kekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeee.......eesdddsdsdsdddddedetae 148
                 + +++ ++++ + +a+r ke++ ++   ++++ + s +e    +       ++  dd+d+d+ddddd+d+++ 
  CCE28028.1 295 SIDAAARQARIDAKARRAKERAAKK-PRVNKQPDGSMKEGLPPKegedgivNDV-DDDDDDDDDDDDDDDEEV 365
                 2233333333334444444333333.3444444444332222223444653333.344444444445555554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                 --TTT--HHHHHHS-HHHHHHHHHHHHHHHHH-------------------------------------..----- CS
  Cwf_Cwc_15  39 RqegqgteeelekrdlraeLeeaeaeakakkrkkaeleaeeeeekekkeeeeeeeeeeakrrkeelleeareidad 114
                  q+ q+ ++e+++                                                         ++i ad
  CCE28028.1 442 DQPHQNDNHEVKQAHKN-----------------------------------------------------SDIQAD 464
                 22222222222111111.....................................................111111 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHH-------------------------------------..------------ CS
  Cwf_Cwc_15  59 eeaeaeakakkrkkaeleaeeeeekekkeeeeeeeeeeakrrkeelleeareidaddedseee 121
                   +e+++ ++ +++ + +++e    ++  + ++++ +e++r + + +   ++ d+dde   e+
  CCE28028.1 676 ALEEEQQDDSGTTTPKGSPKEG--MRQVPQPSNDAMHEDERASIRSVPR-AHSDEDDEPGVEN 735
                 2222222222222111111111..1111111111112222222112211.1333333333222 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 2.9
                  .-----------------.......- CS
  Cwf_Cwc_15  109 reidaddedseeeeeeee.......e 127 
                    +d+d+e++ e  +  +       +
  CCE28028.1 1115 DWVDSDNESDMEAYSGGKsgqpqqpQ 1140
                  23333333333322222244443321 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.1e-06     0.018      50     108 ..     465     526 ..     430     533 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.1e-06
                 HHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS...---EEEEEES----B CS
    Lipase_3  50 qvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengene...kkkvtvvtfGqPrvg 108
                 +++++ +r  ++y+ +si ++GHSLGg + + a ++++++ ++     ++v+ +++++P  g
  CCE28028.1 465 TTKAKHDRHCRSYQITSISFVGHSLGGLIQTYAIAYIQKHSPKFfdlIQPVNFIAMATPFLG 526
                 556677788999999****************9999999999777888899999999999876 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   7.2   2.3e-05     0.084      21      46 ..     345     370 ..     332     392 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
  CENP-B_dimeris  21 eeeeedeededeeddedddevpvpsf 46 
                     ++ ++d++d+d++dd+dd+ev v  +
      CCE28028.1 345 NDVDDDDDDDDDDDDDDDEEVIVRGY 370
                     56677777788888888889988765 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.9e-06     0.036      97     131 ..     474     506 ..     450     534 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.9e-06
      DUF915  97 kkkYnikkfnavGhSmGglaltsYleeyaddkslP 131
                    Y+i+ + +vGhS Ggl    Y+++y +++s P
  CCE28028.1 474 CRSYQITSISFVGHSLGGLIQ-TYAIAYIQKHS-P 506
                 578***************975.57888877663.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 7595.82
//
Query:       CCE28029.1  [L=289]
Description: uncharacterized protein CPUR_01503 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-64  215.5   0.1    8.9e-64  215.1   0.1    1.2  1  Mit_KHE1    Mitochondrial K+-H+ exchange-related
  ------ inclusion threshold ------
       0.16   11.8   0.0       0.28   11.0   0.0    1.4  1  VIT1        VIT family
       0.18   11.7   0.0        0.3   11.0   0.0    1.3  1  Herpes_US9  Alphaherpesvirus tegument protein US9


Domain annotation for each model (and alignments):
>> Mit_KHE1  Mitochondrial K+-H+ exchange-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.1   0.1   1.5e-67   8.9e-64       1     190 []       2     188 ..       2     188 .. 0.94

  Alignments for each domain:
  == domain 1  score: 215.1 bits;  conditional E-value: 1.5e-67
    Mit_KHE1   1 rlillpittkrsliYcekseeilskssaskaeskekledkltnkaaktwaklekaeegwkkkivelgeklldripyeElaLksipsksak....elese 95 
                 rl+llp++t+rsl+Y+++ +       +++a + +++ d+  ++a++tw+++ek+e+gw+kk+ve+g+++++ripyeE++Lks+p  s++    +++ e
  CCE28029.1   2 RLYLLPLSTRRSLLYAQRLH-------HATAPTDTSYFDRGAAWAERTWSNWEKKESGWQKKVVEYGNHAFRRIPYEEWGLKSVPLLSSReqlrRHNAE 93 
                 89****************98.......456667799*************************************************55555556667777 PP

    Mit_KHE1  96 kekkkkekeelksiellyPssllseekvleelrklaeereelhkkrlilcllgiPltlpfalvPviPNlpffYlvyRayshwkAlkgskhLesll 190
                 k +++++++++++++l++P+s++se ++++ +r++ +er  lh++r+++c++g+P+t+pfalvP+iPNlpffYlvyRa+shw+A+ g+kh+++l+
  CCE28029.1  94 KGEEQTPEQNQDHVDLVFPRSVMSEAQAEDAVRRMGSERDGLHRRRMLWCIVGMPITIPFALVPIIPNLPFFYLVYRAWSHWRAIAGAKHIQFLV 188
                 888899999***********************************************************************************985 PP

>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.7e-05      0.28      66     160 ..      86     168 ..      80     190 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.7e-05
        VIT1  66 erkreeeeleedpe.egeaeelaeilearglseelaqevaaellknpdallelmlreelgpsaseelasplkaAlssalsfliGgliPllpylfve 160
                 +++r+++e  e++  e++++++  ++ +  +se++a++ ++++ +++d l +   r+ l        +     ++ + + f++  +iP lp++ + 
  CCE28029.1  86 QLRRHNAEKGEEQTpEQNQDHVDLVFPRSVMSEAQAEDAVRRMGSERDGLHR---RRMLWC------I----VGMPITIPFALVPIIPNLPFFYLV 168
                 33344444444444477779****************************9644...333222......2....799999999999999999999755 PP

>> Herpes_US9  Alphaherpesvirus tegument protein US9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     5e-05       0.3      10      45 ..     120     154 ..     114     158 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5e-05
  Herpes_US9  10 aAdeFLvRiGkyqsklrrRkkrtfCvitliivllvA 45 
                  A++ ++R+G     l+rR+    C++ + i + +A
  CCE28029.1 120 QAEDAVRRMGSERDGLHRRRM-LWCIVGMPITIPFA 154
                 58999***********88887.88977666666565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2037.16
//
Query:       CCE28030.1  [L=378]
Description: uncharacterized protein CPUR_01504 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-61  205.1   0.0      1e-60  204.3   0.0    1.4  1  Svf1_C    Svf1-like C-terminal lipocalin-like domain
    2.2e-54  183.9   0.0      3e-54  183.5   0.0    1.2  1  Svf1      Svf1-like N-terminal lipocalin domain
  ------ inclusion threshold ------
      0.061   13.8   0.3        3.5    8.2   0.0    3.0  3  MFMR      G-box binding protein MFMR


Domain annotation for each model (and alignments):
>> Svf1_C  Svf1-like C-terminal lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.3   0.0   1.7e-64     1e-60       1     165 []     216     377 ..     216     377 .. 0.99

  Alignments for each domain:
  == domain 1  score: 204.3 bits;  conditional E-value: 1.7e-64
      Svf1_C   1 mkpnhaAksWnflnFqsekvsavlmeFttpksygntkvsigiivkddkilavtvdnkvehleaklDeetgwkvPksiklelkgkksevkdeeveaklea 99 
                 mkp+haA++Wnf++Fqs+++sa++meFttp syg+t v++g i+kd++il++++ +++ h e k+D+e++w++P+++k+ +kg+++++k   v+a++e+
  CCE28030.1 216 MKPHHAAAKWNFVCFQSPSYSAIMMEFTTPASYGTTLVNVGGIAKDGEILTAGAGHEIIHAEIKNDTENEWPEPSAVKMAWKGTEKDAK--PVSATIEG 312
                 9************************************************************************************9776..9******* PP

      Svf1_C 100 dleelvervDvlaeiPqfvkkivsgvagtkPYiYqylnkkelklkvedeeevkekGllfaEatfis 165
                 +l+ + +rvDv+ae+P fvk+iv+++agtkPYiYqy+ k++lklk++d+e + e+G l++Eatfis
  CCE28030.1 313 SLGPRSDRVDVMAEVPGFVKTIVAAAAGTKPYIYQYTPKMTLKLKIGDQE-IAEEGQLLMEATFIS 377
                 *************************************************7.99************8 PP

>> Svf1  Svf1-like N-terminal lipocalin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.5   0.0   5.1e-58     3e-54       1     164 []      55     214 ..      55     214 .. 0.97

  Alignments for each domain:
  == domain 1  score: 183.5 bits;  conditional E-value: 5.1e-58
        Svf1   1 vEtqtfYftdldggivgfvQiiySnviGlyktaqftfkifdskekkeknlWkstklenfei..dkasfyadnlsielkneegeqykikssvnkelkvdl 97 
                 vEtqtfY+ +++g  vg+vQ+iySnv+G+++t+qf+ kif+++  ++ +lW st l+nf +  d++ + ad++ +el +++g++y+iks+ +++++v++
  CCE28030.1  55 VETQTFYLASDNG-DVGLVQVIYSNVAGMRTTCQFNSKIFSKDA-SKPHLWCSTPLNNFGFneDQTGCFADDCVLEL-SKDGNEYTIKSMNDERSIVNI 150
                 8**********99.**************************9988.777*************9999************.89******************* PP

        Svf1  98 tvtrlapGfklgedgttyfgddieepwgsmrHvfwPrnkveGtivlkkedkkieftgelglfvdAlq 164
                 ++tr+apGf +g++gtt +g+++e+pwg++rHvfwPr+ +eGti++   d  ++f+g+ +++  Alq
  CCE28030.1 151 KITRTAPGFVAGKTGTTKYGTNLEKPWGCIRHVFWPRCAAEGTITTP--DGPVDFKGR-AMYSFALQ 214
                 **********************************************9..99******5.******99 PP

>> MFMR  G-box binding protein MFMR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00058       3.5      31      71 ..      66     108 ..      31     114 .. 0.78
   2 ?   -2.3   0.1       1.1   6.5e+03      70      84 ..     237     251 ..     232     260 .. 0.72
   3 ?    2.0   0.0     0.049   2.9e+02      46      70 ..     326     350 ..     319     354 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00058
        MFMR  31 ypdWsalqayyg..sgvlppgffasavasspaphPymWgaqpl 71 
                 + d   +q  y+  +g+ +   f+s++ s  a++P++W + pl
  CCE28030.1  66 NGDVGLVQVIYSnvAGMRTTCQFNSKIFSKDASKPHLWCSTPL 108
                 55666788888655788888899***************98886 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
        MFMR  70 plmppygtPvpYaal 84 
                  +m  + tP +Y + 
  CCE28030.1 237 AIMMEFTTPASYGTT 251
                 578899999999764 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.049
        MFMR  46 lppgffasavasspaphPymWgaqp 70 
                  +pgf ++ va++  ++Py++   p
  CCE28030.1 326 EVPGFVKTIVAAAAGTKPYIYQYTP 350
                 5799*99*************98554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2820.00
//
Query:       CCE28031.1  [L=354]
Description: probable GATA type zinc finger protein asd4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.013   16.0  11.3      0.013   16.0  11.3    2.0  3  APG6_N          Apg6 coiled-coil region
      0.017   14.5   6.1      0.038   13.3   6.1    1.6  1  GAS             Growth-arrest specific micro-tubule binding
        1.1    8.2   6.0        2.2    7.3   6.0    1.4  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
        9.2    6.3  18.8       0.11   12.6   2.7    2.8  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C


Domain annotation for each model (and alignments):
>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.7         4   1.8e+04     114     116 ..      79      81 ..      74      87 .. 0.31
   2 ?   16.0  11.3   2.9e-06     0.013      28     123 ..     160     252 ..     147     260 .. 0.80
   3 ?   -2.9   0.8         2   9.1e+03      78      78 ..     325     325 ..     289     352 .. 0.53

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 4
      APG6_N 114 ele 116
                 + +
  CCE28031.1  79 QQQ 81 
                 111 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 2.9e-06
      APG6_N  28 YeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsle 123
                 + ++ + lk++ +e e      e  + +l++le++e+++ +  + + +e+++l+++l+a+ + + +l ++ +   r+ n+l++ l ele el++l+
  CCE28031.1 160 LIAYSSSLKTRVSELE---VINELFRGRLSQLEQQEAAARRGQEVAGEEQSQLRDQLEAALNSEGQLRAQLDDSHRRENNLKRRLDELELELQALK 252
                 3444444444432222...123344556*****************************************************************998 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2
      APG6_N  78 e 78 
                 +
  CCE28031.1 325 A 325
                 1 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   6.1   8.4e-06     0.038      24     105 ..     173     252 ..     167     259 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.4e-06
         GAS  24 NLelIksl.KeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlk 105
                  Le+I++l +  + +l+++e+++++  + + +e ++l+++L++a +   +Lr+ql + ++     +nlk+rl ele el++lk
  CCE28031.1 173 ELEVINELfRGRLSQLEQQEAAARRGQEVAGEEQSQLRDQLEAALNSEGQLRAQLDDSHRRE---NNLKRRLDELELELQALK 252
                 68888887688999*******************************************99955...69999******9999987 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.0   0.00049       2.2      26     101 ..     166     252 ..     155     261 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00049
       Atg14  26 elrerlaklksekeslkkkiekalegke...........eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekk 101
                 +l++r+  l   +e ++++++++++++            e++ql+d+++   ++  +l+++  d+++r ++lk +l++l  e+++ k
  CCE28031.1 166 SLKTRVSELEVINELFRGRLSQLEQQEAaarrgqevageEQSQLRDQLEAALNSEGQLRAQLDDSHRRENNLKRRLDELELELQALK 252
                 6789999999999********999999999999999999999************************************999988876 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.7   2.4e-05      0.11      84     136 ..     159     214 ..     154     218 .. 0.77
   2 ?    4.0   2.6      0.01        45       7      37 ..     222     252 ..     217     261 .. 0.84
   3 ?   -3.0   0.4       1.5   6.8e+03      44      66 ..     317     339 ..     304     346 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.4e-05
  CENP-F_leu_zip  84 eLekelqkkqervseLeslnsslenlleekEqe...kvqmkeeskaaveeLqtqlk 136
                     +L       + rvseLe +n+ ++  l+++Eq+    ++ +e + ++ ++L+ ql+
      CCE28031.1 159 QLIAYSSSLKTRVSELEVINELFRGRLSQLEQQeaaARRGQEVAGEEQSQLRDQLE 214
                     55555666789****************99999955566667777777777887776 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.01
  CENP-F_leu_zip   7 hvlekLKeserkadsLkdkvenLerelemse 37 
                     +++ +L  s r++++Lk + ++Le el+ ++
      CCE28031.1 222 QLRAQLDDSHRRENNLKRRLDELELELQALK 252
                     5677899999****************99876 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.5
  CENP-F_leu_zip  44 ileaEtskaevetlkeeieelae 66 
                      + aE+  aev+   + iee ae
      CCE28031.1 317 QMSAEEPPAEVNDEAATIEEVAE 339
                     33444444555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1263  (0.0704445); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2464.11
//
Query:       CCE28032.1  [L=148]
Description: related to histone H4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1117.43
//
Query:       CCE28033.1  [L=336]
Description: uncharacterized protein CPUR_01507 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-09   37.0   0.0    5.3e-09   36.3   0.0    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    4.8e-05   23.7   0.0    9.7e-05   22.7   0.0    1.5  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0015   18.5   0.0     0.0027   17.6   0.0    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0058   16.7   0.0      0.012   15.8   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.011   16.5   0.0      0.018   15.7   0.0    1.5  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
      0.012   15.7   0.0       0.11   12.5   0.0    2.4  3  Acetyltransf_9   Acetyltransferase (GNAT) domain
      0.022   14.7   0.0       0.06   13.3   0.0    1.7  2  Acetyltransf_13  ESCO1/2 acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.1e-12   5.3e-09      32      94 ..     202     286 ..     171     301 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.1e-12
                     TCEEEEEEETTEEEEEEEEEEEET.....................TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TE CS
  Acetyltransf_1  32 aegllvaeedgeliGfisllkipd.....................ekggvayieslaVspeyrgkGlGsaLlealeeraree.gi 94 
                     +e +l a+ ++ l+G + ++  p+                     +kgg+++i+ +a++p++rg+G+G++Ll+a++++ +++ g 
      CCE28033.1 202 DEIILGARSGPLLVGALIMRLEPNkrsrsstsspskrknrsrsasLKGGKGIIRAWAIAPSHRGQGIGKELLNAAVRYTKDKcGK 286
                     3344447777779999999999999999999999999999999999********************************9999555 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.8e-08   9.7e-05      29      49 ..     255     280 ..     238     309 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.8e-08
                     E.EEE-GGGTTSSHHHHHHHH....T CS
  Acetyltransf_7  29 r.laVdpeyrgkGiGraLlea....a 49 
                     r  a++p++rg+GiG++Ll+a     
      CCE28033.1 255 RaWAIAPSHRGQGIGKELLNAavryT 280
                     3479****************734330 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.1e-06    0.0027      54      84 ..     254     284 ..     244     300 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
  Acetyltransf_10  54 isllfVdpeyrgqGigkaLleaveeeaekdg 84 
                      i   +++p++rgqGigk+Ll+a+ ++ +++ 
       CCE28033.1 254 IRAWAIAPSHRGQGIGKELLNAAVRYTKDKC 284
                      556699********************85443 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.5e-06     0.012      31      55 ..     258     282 ..     247     286 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.5e-06
  Acetyltransf_CG  31 eVpeelrGkGiAkkLvkaalddare 55 
                       + +++rG+Gi+k+L +aa+ ++++
       CCE28033.1 258 AIAPSHRGQGIGKELLNAAVRYTKD 282
                      5789*****************9987 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.0   7.1e-06     0.018      83     119 ..     255     302 ..     173     315 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.1e-06
  Acetyltransf_3  83 lgymlapsfwgkGyateavralleya...........feelglerlva 119
                       + +aps++g+G+++e ++a+++y            f++++++ +++
      CCE28033.1 255 RAWAIAPSHRGQGIGKELLNAAVRYTkdkcgkdaqvgFAQEHAHSVMV 302
                     5799**********************3333333333333334444444 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.5   3.8e+03      93     116 ..     107     130 ..      96     140 .. 0.77
   2 ?   -0.8   0.0      0.61   1.6e+03      23      57 ..     185     218 ..     174     220 .. 0.72
   3 ?   12.5   0.0   4.5e-05      0.11      76     116 ..     254     295 ..     250     299 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.5
                     HHHHHHHHHHHHTT--EEEE--SS CS
  Acetyltransf_9  93 kLlaraleemreegqplsllfPss 116
                     +L+a ++ em+ +  + ++l+P s
      CCE28033.1 107 QLVADSVCEMEPRATKAVILHPLS 130
                     789999999999999999999965 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.61
                     ----H..HHHHHHHHHHTTSEEEEEEETTEEEEEE CS
  Acetyltransf_9  23 deespleeireyfrklleesrvlgaedngelvgql 57 
                     d++s+ + +r+  r    ++ +lga+++  lvg l
      CCE28033.1 185 DQMSQDW-LRADTRAGGHDEIILGARSGPLLVGAL 218
                     4455544.55666777778999*********9987 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 4.5e-05
                     EEEEEE-CCGTTS-HHHHHHHHHHHHHHHT.T--EEEE--SS CS
  Acetyltransf_9  76 vtgVavapehrgrgvlskLlaraleemree.gqplsllfPss 116
                     + ++a ap hrg+g+ ++Ll++a+++ +++ g+   ++f+ +
      CCE28033.1 254 IRAWAIAPSHRGQGIGKELLNAAVRYTKDKcGKDAQVGFAQE 295
                     66799***********************99999999999876 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         5   1.3e+04      39      50 ..     129     140 ..     122     140 .. 0.72
   2 ?   13.3   0.0   2.3e-05      0.06       6      33 ..     252     280 ..     251     297 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5
  Acetyltransf_13  39 lekeevAFsqPT 50 
                      l+   +AFs  T
       CCE28033.1 129 LSLAALAFSWTT 140
                      667788999766 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.3e-05
  Acetyltransf_13   6 GisriWv.ssshRrkgiAtkLldaarenf 33 
                      Gi r W  ++shR +gi ++Ll+aa++ +
       CCE28033.1 252 GIIRAWAiAPSHRGQGIGKELLNAAVRYT 280
                      8899995379**************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2572.27
//
Query:       CCE28034.1  [L=1336]
Description: related to S. pombe protein Asp1p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.8e-109  364.2   0.1   1.5e-108  363.5   0.1    1.3  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)
    3.1e-36  123.4   0.0    6.3e-36  122.4   0.0    1.5  1  PPIP5K2_N   Diphosphoinositol pentakisphosphate kinase 2 N-te
    5.6e-06   26.1   0.0    1.2e-05   25.1   0.0    1.4  1  RimK        RimK-like ATP-grasp domain


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.5   0.1  2.6e-112  1.5e-108       1     382 [.     589    1227 ..     589    1228 .. 0.96

  Alignments for each domain:
  == domain 1  score: 363.5 bits;  conditional E-value: 2.6e-112
                  EEEEEEEEEE--SBB-SHHHHHHHHHHHHHHHH......................................HHCHHTGCCGGGGT............ CS
  His_Phos_2    1 eLksvvvviRHGdRtPkqkvkksvtspiflsllkkhke.............................Klkqlktalekkghfpgtyrkv........ 60  
                  +Lk++v+viRH+dRtPkqk k ++  + f++llk+h+e                             Klk l+++l kkg++ gt+ ++        
  CCE28034.1  589 KLKGMVSVIRHADRTPKQKYKFTFHTDPFIALLKGHQEevlligepalasviqavdlayeagvedlgKLKALRNVLVKKGSWAGTKVQIkpmfrqkr 685 
                  69*********************************************************************************************** PP

                  ........................................................................--SSSTTS.B-HHHHHHHHHHHHHH CS
  His_Phos_2   61 ...................................................................eveklqlilkwggelthaGrkqaeelGrqf 90  
                                                                                     + +klqli+kwgge+th++r+qa+elG+ +
  CCE28034.1  686 tepspdlleppsamqeseaagsdkagsegadsgecdgidraeaftakrhdslsgvtmskftaaeeslVLDKLQLIVKWGGEPTHSARYQAQELGENM 782 
                  ************************************************************************************************* PP

                  HHHCHTCCHTTSS--TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTTSHHTCHHHC......H CS
  His_Phos_2   91 rqrYplgLlrlhltykdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaakdlldeakkklkelltegaeacpafew......p 181 
                  r++   +L+r+    +++ +++sse+Rv aSA+++a  +lg +++ ++++  +kdllddsnaakd++d++kkklk ll++g+e +++f+w      p
  CCE28034.1  783 RNDLM-LLNRDIF--EEVHVFSSSERRVSASAQIWACSFLGKNDIPEGFITTRKDLLDDSNAAKDEMDKVKKKLKGLLRKGNERPAQFAWpdnmpeP 876 
                  *****.*****99..********************************************************************************** PP

                  HHTGGHCHHHHCHCCCCCHHHHH..............HHCHHH..............................CTTEEEE-HHHHHHHHHHHHHHHH CS
  His_Phos_2  182 ikvakrvdelvkylkedmdenia..............krleql..............................cpgesnllakerwdklercfyekn 234 
                   +v +rv++l+k ++ +m++n+               +    +                              c+ge+  l++erw+kl+ +f++ +
  CCE28034.1  877 SEVQTRVVQLMKFHRRVMQHNYGklfggttpslgaisN----PsserlstegsttsisslsqanainsiqprwCSGEDAELFRERWEKLFAEFCDGD 969 
                  ***********************777766666655440....155666667999******************************************* PP

                  HHCT-TTGGGCTH..HCHHHHHH.......................................................................... CS
  His_Phos_2  235 kfdiskicdlydemkydalhnry.......................................................................... 257 
                  k d+ski++lyd+mk dalhnr+                                                                          
  CCE28034.1  970 KVDPSKISELYDTMKFDALHNRQflewvftppksmleeeyaskdgktkdsddtsksseeakseqknppssspegsdktdysnrsvrklfrrrsflnn 1066
                  ************************************************************************************************* PP

                  ..............................HHHHHHHHHC.............TTTCCCCHHHHHHHHHHHHHHHCTSSSEECCSCCCECS-SEEEE CS
  His_Phos_2  258 ..............................lkdleelyklakv.....ipqEygigpeeklkiGllllnpllkkilndlqrtreeatperhvrlrly 319 
                                                ++ l+ely+lak+     +pqEygi+++ekl+iGll+++pllk+i +dl +++     +++++ ++y
  CCE28034.1 1067 frlmndeappeqyfrlykgtnqaatkddprTEPLQELYRLAKImfdfiCPQEYGISDSEKLEIGLLTSLPLLKEIVQDLEEMQ----ASNDAKAFFY 1159
                  ***********************************************************************************....9********* PP

                  EE-HHHHHHHHHHC...TTTTTBTTB.SSS.TTT..HCCCS-CT-EEEEEEEEE..........TCTTT..EEEEEEE CS
  His_Phos_2  320 fthdshiysllnaL...glpeelagedslaaldrlsaspelpymsqivfelyed..........ssekk..fyvrlll 382 
                  ft++shiy+lln +   g+++++++           ++pel+y+sqi+felye           s+e +  +++r+++
  CCE28034.1 1160 FTKESHIYTLLNSIiegGIETKIKRS----------TIPELDYLSQICFELYESetkapsesaiSDEPTftYSIRISI 1227
                  ************999***********..........*****************5444443333322222447777665 PP

>> PPIP5K2_N  Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.0     1e-39   6.3e-36       2      90 .]     110     198 ..     110     198 .. 0.99

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 1e-39
   PPIP5K2_N   2 kvgvcamekkakskpmkeilerlekfeelevvifeeevileepveeWPlcdvlisfyskgfPlekaieYaklrkpflindleaqelllD 90 
                 ++g+ca++ ka+skp ++il+rl + ++++vv+f+++vil+e+ve+WP+cd lisfys+gfPlekai+Y+k rkpf++nd+ +q++l+D
  CCE28034.1 110 TIGICALDIKARSKPSRHILNRLIANRDFDVVVFGDKVILDEEVENWPMCDYLISFYSDGFPLEKAIAYVKARKPFCVNDVPMQKVLWD 198
                 59**************************************************************************************9 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.9e-09   1.2e-05      78     165 ..     335     424 ..     323     437 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.9e-09
                 EEEE--SS-SEEEEEEEETTEEEEEEEEE--..SSS----TTTT-EEEE----HHHHHHHHHHHHHCT-SEEEEEEEEETTEEEEEEEES CS
        RimK  78 vqeyieeaenediRvlvvddevvaalrrvsk..eGdFRsnlhrGgvaeklqlseeekelAikaakamelvvaGvDllrakrgllvlEvns 165
                    +++  + ed++   v+ e   a  r+s   +G  R n h   +  + +ls ee+ +A +++ + +  v+G Dllra    +v++vn 
  CCE28034.1 335 YESFMQVDNAEDVKAYTVGPEYCHAETRKSPviDGIVRRNTHGKEIRYVTSLSAEERGIASRISTTFGQRVCGFDLLRAGGKSYVIDVNG 424
                 5679999999************999999884449*********9*********************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.43
# Mc/sec: 9340.67
//
Query:       CCE28035.1  [L=1914]
Description: related to U3 snoRNP protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-79  266.4   0.0    1.9e-79  266.4   0.0    2.2  3  Utp21            Utp21 specific WD40 associated putative doma
    2.4e-32  112.2   0.0      1e-25   90.6   0.0    3.3  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    9.1e-14   51.6  21.2      1e-05   26.2   0.8    7.3  7  WD40             WD domain, G-beta repeat
    1.9e-10   40.9   0.0        1.6    9.1   0.0    6.6  5  ANAPC4_WD40      Anaphase-promoting complex subunit 4 WD40 do
      9e-05   21.3   0.1       0.59    8.7   0.0    3.5  4  Nup160           Nucleoporin Nup120/160
    0.00025   19.7   0.0    0.00049   18.7   0.0    1.4  1  Cytochrom_D1     Cytochrome D1 heme domain
     0.0033   16.2   0.0       0.84    8.3   0.0    2.3  2  Nucleoporin_N    Nup133 N terminal like
  ------ inclusion threshold ------
        2.3    8.3   7.7        7.3    6.7   7.7    1.8  1  DUF809           Protein of unknown function (DUF809)


Domain annotation for each model (and alignments):
>> Utp21  Utp21 specific WD40 associated putative domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.4   0.0   8.6e-83   1.9e-79       6     233 .]     818    1039 ..     814    1039 .. 0.94
   2 ?   -3.4   1.5       2.4   5.5e+03      82     106 ..    1563    1608 ..    1526    1631 .. 0.44
   3 ?   -6.1   3.7         8   1.8e+04      77     104 ..    1873    1900 ..    1863    1907 .. 0.49

  Alignments for each domain:
  == domain 1  score: 266.4 bits;  conditional E-value: 8.6e-83
                  XXXX..XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX-HHHHHHHHTT--- CS
       Utp21    6 eeeeeeedadvkspsseqlsedLiTLSlvpksrwqtLlnLDlIKeRnkPkeapkkpekaPFFLptlaglegkfasekedeeseedeeeeeeeesril 102 
                  e+++ee d+ + +p+++qls++L+TLSlvpksrwqtLl+LDlIKeRn+P+eapk pekaPFFLp+++g++   ++           ++e++++sri+
  CCE28035.1  818 EDDKEEADDAIIAPTVDQLSAELTTLSLVPKSRWQTLLHLDLIKERNRPTEAPKLPEKAPFFLPSTPGARLPGQEA-------VGVSNEDDSKSRIT 907 
                  3344555558888878***************************************************998765554.......678899999***** PP

                  ---.------HHHHHHHHHHSS--HHHHHHHHH-S-HHHHHT----...----S-SHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTTTTTTT-S CS
       Utp21  103 kldklgteseftklLeegsetgdysefleyLkslspsaidleirsL...esaesleelvafvkaltarLksrrdfeLvqailsvfLkvHgdviaeee 196 
                  +ldk  +e++f+++L++g++ gdy ef+++Lkslsps++dle+rsL   e +++ +el +f+ a+ta+L+ r+ +eL+qa+++vfL++H d+++e+e
  CCE28035.1  908 RLDKARFEEQFSSKLRRGAKAGDYGEFVDHLKSLSPSSADLELRSLsmgEGDAESNELLHFILAMTAQLRLRKYYELTQAWMTVFLRLHFDMVMENE 1004
                  **********************************************9999999******************************************** PP

                  H..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
       Utp21  197 eeelkealeelkeeqeeewerldelvkyclgvvgflr 233 
                     l  alee+k++q +e++rld+lv+yc+gvv+flr
  CCE28035.1 1005 V--LLGALEEWKTQQVQECNRLDNLVGYCSGVVSFLR 1039
                  9..********************************98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.4
                  X......................XXXXX-HHHHHHHHTT------. CS
       Utp21   82 k.....................edeeseedeeeeeeeesrilkldk 106 
                  +                     e+e++++ e+  +++ +r l+ d+
  CCE28035.1 1563 AidkaetetisdaakptseanpETETKSNGEDAAADAGKRALEADD 1608
                  0444433344444444444444344444444444444444444443 PP

  == domain 3  score: -6.1 bits;  conditional E-value: 8
                  XXXXXX.XXXXX-HHHHHHHHTT----- CS
       Utp21   77 kfasekedeeseedeeeeeeeesrilkl 104 
                  ++ + ++++ +ee+ee++e+ee++ +++
  CCE28035.1 1873 DEGQGEAAQGEEEKEEKGEKEEEEAVEV 1900
                  2223334445555555555555555554 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.6e-06    0.0036       3      32 ..    1227    1256 ..    1225    1265 .. 0.84
   2 !   90.6   0.0   4.6e-29     1e-25      33     164 ..    1300    1441 ..    1296    1533 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.6e-06
                       HH---TT-EEEESS-TTSHHHHHHHHHTTT CS
  Methyltr_RsmB-F    3 lLapqeeetilDlcaaPGgKTthiaelmkn 32  
                       l++++++  +lD+caaPG+K + + e++++
       CCE28035.1 1227 LMDLRPGMVVLDMCAAPGSKSAQLVEMIHQ 1256
                       567788899*****************9654 PP

  == domain 2  score: 90.6 bits;  conditional E-value: 4.6e-29
                       TSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC............EEEEEEEE--CCGGGTTT-TCHHHH--HHHHHHHH CS
  Methyltr_RsmB-F   33 kgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg..........elfDriLlDaPCsgtgvirrdpdvklrrkekdiaqla 114 
                       +g ++A+d + +R + +++ lkrL+  n+iv++ Da+++++               +fDriL D+PCsg g++r++ ++    ++ +   l+
       CCE28035.1 1300 TGLLIANDSDYKRGHMLVHQLKRLSSPNLIVTNHDATQFPSLKLPsmdpdakpryLKFDRILADVPCSGDGTLRKNANLWKDWQPGNALGLH 1391
                       6889***********************************987766678999999999**********************9999********* PP

                       HHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-TTEEEES CS
  Methyltr_RsmB-F  115 klqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelve 164 
                         q ++l  a++llk gG +vYsTCs+++ Ene v+++a+++   ++ ve
       CCE28035.1 1392 ATQTRILVRALQLLKVGGRVVYSTCSMNPVENESVVASAIERCGGAQNVE 1441
                       ***************************************99865554444 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.86   1.9e+03      25      38 .]     197     210 ..     171     210 .. 0.84
   2 ?   -0.4   0.0       1.1   2.6e+03      13      37 ..     339     363 ..     317     363 .. 0.74
   3 !   13.8   0.2   3.7e-05     0.082       4      35 ..     377     417 ..     374     420 .. 0.88
   4 ?    3.1   0.2     0.092   2.1e+02      11      30 ..     544     563 ..     537     568 .. 0.80
   5 !   16.7   0.1   4.6e-06      0.01       9      38 .]     621     651 ..     614     651 .. 0.91
   6 ?   -1.8   0.0       3.2   7.1e+03      14      36 ..     670     692 ..     669     694 .. 0.77
   7 !   26.2   0.8   4.6e-09     1e-05       4      38 .]     701     736 ..     698     736 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.86
                 EEEEETTSEEEEEE CS
        WD40  25 lasGsdDgtvriWd 38 
                 ++ G +Dg v iW+
  CCE28035.1 197 IFVGRKDGWVEIWN 210
                 345999*******8 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                 ++ + f   ++ ++s++ D++++ W
  CCE28035.1 339 ISKVEFLVGQPVVVSSGLDNSLKTW 363
                 666767777788999999****988 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 3.7e-05
                 EEEEESS.SSEEEEE........EETTSSEEEEEETTSEEE CS
        WD40   4 lrtltGH.ssvtsla........fspdgawlasGsdDgtvr 35 
                 l++ +GH ++v++l+            ++wl+sG++D+++ 
  CCE28035.1 377 LHSRSGHaGPVNCLRflptdfdgSEGGNKWLLSGGRDRSLW 417
                 78889**999********999999999999********985 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.092
                 SSEEEEEEETTSSEEEEEET CS
        WD40  11 ssvtslafspdgawlasGsd 30 
                 ++v+s+a sp g++ + Gs+
  CCE28035.1 544 TNVSSVAISPCGTFAVVGSE 563
                 359***********999994 PP

  == domain 5  score: 16.7 bits;  conditional E-value: 4.6e-06
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  H + vt+l ++  ++ ++s+s Dg++++Wd
  CCE28035.1 621 SHtKAVTGLVVDAMNKTIVSCSADGKIKFWD 651
                 58888*************************9 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 3.2
                 EEEEEETTSSEEE.EEETTSEEEE CS
        WD40  14 tslafspdgawla.sGsdDgtvri 36 
                 ts++++  +++la +++ D ++r+
  CCE28035.1 670 TSCRYHAANNLLAfACD-DLSIRV 692
                 67888888899984556.**9998 PP

  == domain 7  score: 26.2 bits;  conditional E-value: 4.6e-09
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +r++ G   s+++++fs+dg+w++++s D+ +r+Wd
  CCE28035.1 701 IREFWGPsESINDICFSHDGRWVIAASNDHVLRVWD 736
                 5566666556**************99*********9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.023        51      53      88 ..     197     234 ..     194     238 .. 0.85
   2 !    5.6   0.0    0.0086        19      34      79 ..     539     584 ..     528     596 .. 0.89
   3 !    5.6   0.0    0.0086        19      33      78 ..     618     663 ..     588     672 .. 0.84
   4 !    9.1   0.0    0.0007       1.6      44      76 ..     672     704 ..     668     708 .. 0.91
   5 ?    4.5   0.0     0.019        42      38      81 ..     708     751 ..     705     760 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.023
  ANAPC4_WD40  53 Lavaysdgevrlldaesgkvvhslsvksek..avtclg 88 
                  + v+ +dg v++ ++++gk++ ++   + +  +vtc++
   CCE28035.1 197 IFVGRKDGWVEIWNVSTGKLIYTILPPNPEcgSVTCME 234
                  5799*****************99977776666788875 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0086
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                   ++++ +v+s+a +p g++ +v+ + g + +++ +sg+  + ++ k
   CCE28035.1 539 PTGDGTNVSSVAISPCGTFAVVGSEGGGIDMFNLQSGHHRQRFPSK 584
                  4678999******************************999988765 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0086
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                   + ++ + v++L     +k ++   +dg++++ d  sg+++++l+ 
   CCE28035.1 618 GTGSHTKAVTGLVVDAMNKTIVSCSADGKIKFWDFLSGTLLEQLDW 663
                  46788999*********************************99876 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0007
  ANAPC4_WD40  44 LaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                   +++  ++lLa+a++d ++r++d+e++k+++++
   CCE28035.1 672 CRYHAANNLLAFACDDLSIRVVDMETKKTIREF 704
                  6789999**********************9876 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.019
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +++++++++++dg+    a +d  +r+ d  + +++ +++ ++ 
   CCE28035.1 708 SESINDICFSHDGRWVIAASNDHVLRVWDLPTSHLIDAIRLEKP 751
                  5789*******************************999988876 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0033       7.4     231     257 ..     195     221 ..     179     252 .. 0.80
   2 ?   -4.3   0.0       2.3   5.1e+03      34      61 ..     292     318 ..     289     325 .. 0.82
   3 ?    2.9   0.0     0.015        34     226     258 ..     631     663 ..     601     683 .. 0.82
   4 !    8.7   0.0   0.00026      0.59     231     259 ..     721     749 ..     707     776 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0033
                 TEEEEEETT-EEEEEETTTTEEEEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclatid 257
                 + +f+   dg++ +Wn++tgk+++ti 
  CCE28035.1 195 NKIFVGRKDGWVEIWNVSTGKLIYTIL 221
                 56777789****************985 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 2.3
                 TCEESSEEEEESSSSEEEEEE.EETTEE CS
      Nup160  34 tagvvyfrksnsynrfilWrvltdgktL 61 
                 ++gv+ + +s++++++  W+++++g+++
  CCE28035.1 292 KDGVMVT-ASQATGDVTFWDLNNGGRVM 318
                 4666666.99**********99999987 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.015
                 ...TTTEEEEEETT-EEEEEETTTTEEEEEEE- CS
      Nup160 226 veigqtylfalsrdgkLrvWnlltgkclatidl 258
                 v++ ++++++ s dgk++ W+ l+g++l++ d 
  CCE28035.1 631 VDAMNKTIVSCSADGKIKFWDFLSGTLLEQLDW 663
                 33367899******************9998776 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00026
                 TEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclatidll 259
                   + a+s d++LrvW+l t  ++  i l 
  CCE28035.1 721 RWVIAASNDHVLRVWDLPTSHLIDAIRLE 749
                 56899***************999999887 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.2e-07   0.00049      13     124 ..     686     795 ..     677     806 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.2e-07
                   GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEEEEEE--TTSEEEEEEEETTEEEEEETTT- CS
  Cytochrom_D1  13 dagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlnarsvavSqddryvivgnYlPgqlvildaetL 109
                   d+ +++++d ++k+++  + +  +      f+ dgR+v  ++ D  + + DL + + +  +++      +++S  + y+++     +++++   +tL
    CCE28035.1 686 DDLSIRVVDMETKKTIREFWGPSESINDICFSHDGRWVIAASNDHVLRVWDLPTSHLIDAIRLEKPCTALDMSVTGEYLAATLEDEPGVALWTNKTL 782
                   7889*******************99999******************************************************99999*****99997 PP

                   -EEEEEE--EE-SSS CS
  Cytochrom_D1 110 elvkvisargltvde 124
                      k++++r+++++e
    CCE28035.1 783 --FKHVPTRQISEKE 795
                   ..8999999987754 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00038      0.84     197     249 ..     619     667 ..     570     697 .. 0.84
   2 !    5.5   0.0    0.0026       5.9     192     232 ..     702     739 ..     688     751 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00038
                    ----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHH CS
  Nucleoporin_N 197 gasereeivqlridssrrilytlsskgvirvydlsasngesslksdidirqil 249
                    ++s  ++++ l++d   + +++ s++g+i+++d+     + +l +++d+ ++ 
     CCE28035.1 619 TGSHTKAVTGLVVDAMNKTIVSCSADGKIKFWDFL----SGTLLEQLDWAPMT 667
                    566899***************************99....56899999998765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0026
                    SS--G----GG-EEEEEEECCTCEEEEEETTSEEEEEEEET CS
  Nucleoporin_N 192 pgvlsgasereeivqlridssrrilytlsskgvirvydlsa 232
                    + +++   ++e+i  ++ ++  r+++++s+++v+rv+dl +
     CCE28035.1 702 REFWG---PSESINDICFSHDGRWVIAASNDHVLRVWDLPT 739
                    55555...78999999999999****************974 PP

>> DUF809  Protein of unknown function (DUF809)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   7.7    0.0033       7.3      87     133 ..    1856    1901 ..    1852    1906 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0033
      DUF809   87 kkvspiikgeiegkeekkegkgeiegkeekkegkgeiegkeekkeve 133 
                  +  +p+i+  ++ +++k eg+ge    ee+ke kge e  ee  eve
  CCE28035.1 1856 NDTTPLINNTLNKNKKKDEGQGEAAQGEEEKEEKGEKEE-EEAVEVE 1901
                  56789*******9***********************885.5666776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1914 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1000  (0.0557756); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.21u 0.32s 00:00:01.53 Elapsed: 00:00:00.45
# Mc/sec: 12653.67
//
Query:       CCE28036.1  [L=606]
Description: related to GTP-binding protein OBG [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-41  141.4   0.4    1.8e-30  105.5   4.1    2.3  2  GTP1_OBG  GTP1/OBG
    1.8e-23   82.8   0.0    5.2e-23   81.3   0.0    1.9  1  MMR_HSR1  50S ribosome-binding GTPase
      5e-07   29.4   0.1    1.7e-05   24.4   0.0    2.7  3  FeoB_N    Ferrous iron transport protein B
     0.0034   17.9   0.2      0.013   16.0   0.0    2.1  2  ABC_tran  ABC transporter
  ------ inclusion threshold ------
      0.013   15.8  15.9      0.065   13.5  11.0    2.2  2  DUF4355   Domain of unknown function (DUF4355)
      0.028   13.9   0.4       0.51    9.8   0.0    2.5  3  Arf       ADP-ribosylation factor family
        1.3    7.2   4.7        0.6    8.3   2.7    1.3  2  CDC45     CDC45-like protein


Domain annotation for each model (and alignments):
>> GTP1_OBG  GTP1/OBG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   4.1   7.2e-34   1.8e-30       2     104 ..      66     168 ..      65     185 .. 0.91
   2 !   30.0   0.0   1.3e-10   3.3e-07     102     155 .]     281     335 ..     262     335 .. 0.88

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 7.2e-34
                 EEEEEEEE----------BEEETTCCCEEB-S--------EEEEE-TT--SSGCCCTSSEEE-------BTTTB-------EEEEESTTEEEEETTTTE CS
    GTP1_OBG   2 devkikvkaGkGGdGcvsfrrekyvpkggpdGGdGGkGGdvileadeklntlldlkykkkikAenGenGkgknksGkkgkdlvikvPvgtvvkdeetge 100
                 d+++++++aG+GG+Gc++f re + p g p+GGdGG+GG+++++a +  ++l++l  +++++A +G +G+gk++ G +g+d++i+vPvgt+v++ e+++
  CCE28036.1  66 DNAEVTLHAGRGGNGCIAFLREAHLPDGPPNGGDGGQGGNIYIQAAHGETSLHKLARQRVLRAGSGGHGQGKSQGGTRGEDIIITVPVGTIVRELERQD 164
                 999******************************************************************************************977776 PP

                 EEEE CS
    GTP1_OBG 101 vlad 104
                 + a+
  CCE28036.1 165 LAAE 168
                 5543 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 1.3e-10
                 EEEE-STT.-EEEEE-----EE-GGGC-CSSCSS--EEEE-----EEEEEEEECS CS
    GTP1_OBG 102 ladltedg.eevlvakGGkgGkGnaafksstnraprfaekGeegeereleLelkl 155
                 ++dl++++ + +l+a GG gG+Gn +f+s ++ +pr a++Ge+g + ++ Lelkl
  CCE28036.1 281 YLDLSRPTpRPILLAVGGIGGLGNPHFTSWQRAKPRLATRGESGVSVKVSLELKL 335
                 56777754156899***************************************95 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0     2e-26   5.2e-23       1      87 [.     338     470 ..     338     541 .. 0.82

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 2e-26
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE.................................EEEEECGGCSSHHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke.................................ielvDtpGliegaseekgl 66 
                 +v++vG pN+GKStL++a+t+++ +v+++++tT+++n g+v l++ +                                 ++++D+pGliega+ ++gl
  CCE28036.1 338 DVGFVGLPNAGKSTLLRAMTNSRTRVGSWAFTTLKPNIGTVVLDKYSgrptisrkvrqdtspidsandvssevhvnartrFTVADIPGLIEGAHLDRGL 436
                 599**************************************976544566777777888888888888888888888888******************* PP

                 HHHHHHHHC.TSEEEEEEETT............T CS
    MMR_HSR1  67 gkaflalee.adlillvvdas............e 87 
                 g afl++ e a ++++v+d+s            +
  CCE28036.1 437 GIAFLRHVErAGVLAFVIDLSagnavtalkalwR 470
                 ******99889********996655544433331 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   6.6e-09   1.7e-05       3      45 ..     339     381 ..     337     386 .. 0.88
   2 ?   -2.7   0.0       1.4   3.7e+03      43      57 ..     413     426 ..     406     433 .. 0.78
   3 ?    1.6   0.0     0.068   1.8e+02      82     125 ..     475     518 ..     452     525 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6.6e-09
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklk 45 
                 v +vG pn+Gk+tl+ a+t+++++vg w+ +t + + g++ l+
  CCE28036.1 339 VGFVGLPNAGKSTLLRAMTNSRTRVGSWAFTTLKPNIGTVVLD 381
                 678*****************************99888887655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.4
                 EETTEEEEEEE---- CS
      FeoB_N  43 klkgkeveivDlPGi 57 
                 + +++++++ D+PG 
  CCE28036.1 413 N-ARTRFTVADIPGL 426
                 3.568999*****96 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.068
                 EEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE CS
      FeoB_N  82 vvnvvdatnlernLyLtlqllelgvpvvlalnmideaekkgiei 125
                   ++ d ++ er+L   ++ +++++++   +n++d+ae ++ +i
  CCE28036.1 475 YAQMRDEEERERKLETQIDWTNFEKNTNATINLTDVAEYEKPTI 518
                 5566788889999999999*****************99988766 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       3.1   7.9e+03      77      79 ..     200     202 ..     158     241 .. 0.52
   2 !   16.0   0.0     5e-06     0.013       3     115 ..     328     524 ..     327     531 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.1
                 HHH CS
                 xxx RF
    ABC_tran  77 ren 79 
                  e+
  CCE28036.1 200 NEQ 202
                 222 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 5e-06
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...........SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkp...........teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........... 79 
                 +vsl+lk    v++vG   aGKStLl+++++  +            + G++ ld+ + + +  +++r+  + +   + + +e+ v  +           
  CCE28036.1 328 KVSLELKLLADVGFVGLPNAGKSTLLRAMTNSRTRvgswafttlkpNIGTVVLDKYSGRPTISRKVRQDTSPIDSANDVSSEVHVNARtrftvadipgl 426
                 589999999********************9987655555555555555666666555555666666666666666666666665544456667777777 PP

                 ........................................................HHHTCHHHHHHHSTTGG......TTCBGESTTSGGS-HHHHH CS
                 ........................................................xxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ........................................................esdeeiekalsklglke......lkdtvvksspssLSgGqkq 115
                                                                         e+++++e+ +++ + ++        ++v+++++ ++SgG  q
  CCE28036.1 427 iegahldrglgiaflrhveragvlafvidlsagnavtalkalwrevglyaqmrdeeERERKLETQIDWTNFEKntnatiNLTDVAEYEKPTISGGDAQ 524
                 77777777777777777777777777777777777777777777777766666655333334444444444443333335555555666677777666 PP

>> DUF4355  Domain of unknown function (DUF4355)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5  11.0   2.5e-05     0.065      16      85 ..     164     234 ..     155     239 .. 0.88
   2 ?    4.7   0.2     0.014        35      37      73 ..     473     509 ..     461     513 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
     DUF4355  16 aletkknklekeledeikkeakklakmnaeekaeyeleklqke..leelkaelarkelkaearkvlaekkip 85 
                  l+++++kl +e+ +++ k++++++ m +eek+  ++ ++++e  +e+++++ +r+  ++ a+  +++++ +
  CCE28036.1 164 DLAAEEAKLMAEYRKAM-KKKRRMQRMLEEEKRRSAVNEQEDEgaVEDEEEAVDRRGRRNRAKAAFQDQDDD 234
                 68899***********9.****************8888877753399********************99865 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.014
     DUF4355  37 kklakmnaeekaeyeleklqkeleelkaelarkelka 73 
                   +a+m +ee++e +le + +  + +k++ a+ +l++
  CCE28036.1 473 GLYAQMRDEEERERKLETQIDWTNFEKNTNATINLTD 509
                 579**************99999988888888877765 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2         3   7.8e+03      99     116 ..     181     198 ..     175     200 .. 0.75
   2 ?    9.8   0.0    0.0002      0.51      19      53 ..     341     378 ..     327     384 .. 0.76
   3 ?    1.3   0.0     0.079     2e+02      75     168 ..     494     597 ..     488     602 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3
                 HHHHHHHHHCTSGCCTTS CS
         Arf  99 eakeeLkalleeeelkev 116
                 + k+ ++++leee+ +++
  CCE28036.1 181 KKKRRMQRMLEEEKRRSA 198
                 567889999999987765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0002
                 EEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEE CS
         Arf  19 llGLDnaGKtTilkklkleelvt...tvPTigfnveel 53 
                 ++GL naGK+T+l  +++ ++        T+ +n+ ++
  CCE28036.1 341 FVGLPNAGKSTLLRAMTNSRTRVgswAFTTLKPNIGTV 378
                 89************999988765445566777777666 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.079
                 GGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTS.S-HHHHHHHTTGGG...SS........SSSSEEEEEEBTTTT CS
         Arf  75 WknYfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpea.lseeelrellglee...lk........gkrkleiqkcsavkg 161
                 W n+ ++t+a i + D+a+ e+ + +  + +a  +  +++  ++ v+a K D p++ ++ +el++ l+  +   ++         +r  + + +sa++g
  CCE28036.1 494 WTNFEKNTNATINLTDVAEYEKPTISGGDAQA--AGLHIAGKPWFVVATKGDRPDTeANFHELTTYLDGITageVEhpsgvagaWTRMCKAIPVSAIQG 590
                 99999999999999999999887777766554..45567777888888888887651445666666543333442233333343455556666666666 PP

                 BTHHHHH CS
         Arf 162 eglkegl 168
                 +g++  +
  CCE28036.1 591 QGVDRVV 597
                 6666655 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.7   0.00024       0.6     115     198 ..     159     253 ..     103     268 .. 0.50
   2 ?   -3.8   0.0       1.1   2.9e+03     405     434 ..     455     484 ..     451     507 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00024
       CDC45 115 eleeereayealeeeeesd..eede.........eeeeeddddeeeeeeeeedeedeeedeeeskkkrk...sksdeeee.sddddersrkrrrsepsa 198
                 ele++  a e+ + + e +     +         e ee+  +  +e+e+e   e++ ee  ++++++++   + +d++++   + +++sr++   +p a
  CCE28036.1 159 ELERQDLAAEEAKLMAEYRkaM--KkkrrmqrmlE-EEKRRSAVNEQEDEGAVEDE-EEAVDRRGRRNRakaAFQDQDDDsGPEIEDPSRQKWLLHPGA 253
                 5555444444444444443220..12223333322.22222222222222222222.222233333333122333333333333445666665555444 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.1
       CDC45 405 elsAaDvvealtAlLevgkgveaksekeae 434
                 +lsA ++v al+Al      +++ +++e++
  CCE28036.1 455 DLSAGNAVTALKALWREVGLYAQMRDEEER 484
                 688888999998887665533211111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1200  (0.0669307); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 3787.65
//
Query:       CCE28037.1  [L=350]
Description: uncharacterized protein CPUR_01511 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        1.5    8.9   5.7        2.3    8.3   5.7    1.3  1  DDHD         DDHD domain
        8.2    4.2  10.1         12    3.7  10.1    1.2  1  V_ATPase_I   V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.7   0.00026       2.3      88     186 ..     109     255 ..      71     285 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00026
        DDHD  88 lelkesltsigaalkqkvsglvssls.................................allnrslelaeeesaslaessksherasesskasqeskaa 153
                 +elk  + ++ +a++q+  +++++                                   + l++  +l+++e+ +++e+ +++er +++++  +e++ +
  CCE28037.1 109 AELKRAIDQAWHASVQRYPEVLEQQIskgeqldkkgqvgqqghlnkrgqlekgehldkrGQLEKAEQLEKGEQLEKEEQLEKEERLEKEEQLAKEEQLE 207
                 333333444444444433333332224666666666666655555555554444433332555556666666666666666666666666655555555 PP

        DDHD 154 esstasssaksskaee...............kvelekvralnwwgRiD 186
                 ++++ +++++ +k+e+               +++l++ ++l +++R+D
  CCE28037.1 208 KEEQLEKEEQLEKEERpekreqlqegepldnEHQLDNGQQLDNGQRLD 255
                 555555555544444444444444444444433333344555555666 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  10.1    0.0013        12      29     193 ..     123     334 ..     105     340 .. 0.47

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0013
  V_ATPase_I  29 vrrcdemerklrfleeeieklekavikeeea.....eesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeee 122
                 v      +r  ++le++i+k  ++  k+ +       +++ + e+ e  +   +lek+e       + ++  + e++e +e+++ lek +++ +ee+ e
  CCE28037.1 123 V------QRYPEVLEQQISK-GEQLDKKGQVgqqghLNKRGQLEKGEHLDKRGQLEKAE-------QLEKGEQLEKEEQLEKEERLEKEEQLAKEEQLE 207
                 4......4444556666666.33333333331111123333333333333333333332.......222222222333334444444444444333222 PP

  V_ATPase_I 123 eeeeeseeeeeekeeeeeeeseeeeeeelleeeee........................................................lsfvaGvi 165
                 +ee+ ++ee + ++ee+ e+ e+ +e e l++e++                                                         ++v G++
  CCE28037.1 208 KEEQLEKEE-QLEKEERPEKREQLQEGEPLDNEHQldngqqldngqrldevglpavqvavaaavvtvishddhdadqarhggndgdqaiitEKIVDGLL 305
                 222221111.11222222222222222222222223334445667777777778877777766666666666666666666666666665555578888 PP

  V_ATPase_I 166 krekveaferi.lwralrgnlflrqaeie 193
                  ++ v + +r+ l+r+ ++ ++l q + e
  CCE28037.1 306 MTSFVLKGKRMgLYRIQKQSVYLLQRNHE 334
                 88888887777788888888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1775  (0.0990016); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2498.45
//
Query:       CCE28038.1  [L=477]
Description: related to brefeldin A resistance protein BFR1 (maintenance of normal ploidy) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0047   17.1   6.4     0.0047   17.1   6.4    6.5  6  ABC_tran_CTD  ABC transporter C-terminal domain
  ------ inclusion threshold ------
       0.58   10.5   5.1       0.58   10.5   0.4    3.0  3  DUF2935       Domain of unknown function (DUF2935)
        2.2    8.7   7.7          2    8.9   0.4    4.0  4  UPF0184       Uncharacterised protein family (UPF0184)
        4.9    7.6  16.6        1.2    9.6   0.2    5.2  6  FlaC_arch     Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.7      0.33   1.5e+03      16      57 ..      42      79 ..      28      85 .. 0.71
   2 !    6.8   0.4    0.0018       8.2      15      40 ..     124     150 ..     109     169 .. 0.76
   3 !   17.1   6.4   1.1e-06    0.0047      10      61 ..     170     221 ..     164     223 .. 0.90
   4 ?   -1.8   0.1      0.87   3.9e+03      44      52 ..     236     244 ..     225     255 .. 0.51
   5 ?   -7.1  10.4         4   1.8e+04      21      34 ..     284     297 ..     232     315 .. 0.70
   6 !    5.5   2.2    0.0044        20      12      53 ..     429     469 ..     413     472 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.33
  ABC_tran_CTD 16 eIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeL 57
                   +++L + +a+++ +l +     + ++l+ ++++ +el a+ 
    CCE28038.1 42 SMDQLNAIKAKIDVALPNK----NKDQLSPAQKRRQELIAQA 79
                  5677777777777766654....4566888888888877765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0018
  ABC_tran_CTD  15 aeIeaLEeeiaeleaeladpely.sdp 40 
                   + Ie L+ +ia++e+e+++ ++   d+
    CCE28038.1 124 KSIEDLDRQIAQIEKEVNSGAMKlVDE 150
                   469999999999999999887654444 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 1.1e-06
  ABC_tran_CTD  10 leeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeely 61 
                   ++   ++I+ L ++i+e+ + ++dpe  + +e+ ++++ el++++ae +e++
    CCE28038.1 170 FDDAQKQIDDLRAKIKEIKDTVEDPEQKALSEEYNKIQSELDAIKAEQDEAF 221
                   566789********************66666*******************97 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.87
  ABC_tran_CTD  44 aelsaelee 52 
                   ae ++++++
    CCE28038.1 236 AEQQEKYTA 244
                   233333444 PP

  == domain 5  score: -7.1 bits;  conditional E-value: 4
  ABC_tran_CTD  21 Eeeiaeleaeladp 34 
                   E+++ae e++la++
    CCE28038.1 284 EKKKAEAEKKLAEA 297
                   55666666655554 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.0044
  ABC_tran_CTD  12 eleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleel 53 
                   +  + Ie+  +e+++ ea  a ++ +++ +k+ae+++  ee+
    CCE28038.1 429 QTQRNIEKAKKELEKAEANGATNT-TTNGDKVAEVTQSVEEV 469
                   567789999999999999999887.467799****9999986 PP

>> DUF2935  Domain of unknown function (DUF2935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.15   6.8e+02      58      82 ..      90     147 ..      25     170 .. 0.48
   2 ?   10.5   0.4   0.00013      0.58      26      95 ..     193     272 ..     165     278 .. 0.93
   3 ?   -1.6   0.2      0.71   3.2e+03      33      56 ..     416     439 ..     406     472 .. 0.54

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.15
     DUF2935  58 v.................................rasseleeavakLneealkltrel 82 
                                                   +  ++l +++a++ +e+ + +++l
  CCE28038.1  90 KnartgkldqikrlddqlrsrtaeqkaarakvpfKSIEDLDRQIAQIEKEVNSGAMKL 147
                 1222222233333333333333333333333343333445555555555555555555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00013
     DUF2935  26 dpkekdlikeakefkkeFekllaeavelseglv..........rasseleeavakLneealkltreliqFkkellekvls 95 
                 dp++k+l +e ++++ e++++ ae+ e+ +g+             ++e+ +a++kL ++ +++ +++ ++ +e  ek ++
  CCE28038.1 193 DPEQKALSEEYNKIQSELDAIKAEQDEAFKGISslrdersrlqAEQQEKYTAIRKLKDDYYSQKKAFQAYEREAREKAQA 272
                 8999************************9*999*******99888889999*********************99998776 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.71
     DUF2935  33 ikeakefkkeFekllaeavelseg 56 
                  ++++++k++ e+++++++e ++ 
  CCE28038.1 416 KAKLDHWKNDQEAQTQRNIEKAKK 439
                 556666666666666665553332 PP

>> UPF0184  Uncharacterised protein family (UPF0184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.16   7.4e+02      25      69 ..      40      85 ..      15      94 .. 0.57
   2 ?   -1.6   0.0      0.83   3.7e+03      35      49 ..      97     111 ..      90     118 .. 0.61
   3 ?    0.0   0.0      0.26   1.2e+03      42      59 ..     170     187 ..     165     190 .. 0.87
   4 ?    8.9   0.4   0.00045         2      13      44 ..     188     219 ..     183     237 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.16
     UPF0184 25 eeEyeainsmLDqinsaLDalEern.Ddl...nskLrELlesnRqiRle 69
                ++ ++++n    +i+ a   l ++n D+l   + + +EL+   ++iR++
  CCE28038.1 40 KASMDQLNAIKAKIDVA---LPNKNkDQLspaQKRRQELIAQAKEIRQK 85
                33334444333333333...44444255522245778899888888865 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.83
     UPF0184  35 LDqinsaLDalEern 49 
                 LDqi    D+l  r+
  CCE28038.1  97 LDQIKRLDDQLRSRT 111
                 555555555555554 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.26
     UPF0184  42 LDalEernDdlnskLrEL 59 
                  D+  ++ Ddl +k++E+
  CCE28038.1 170 FDDAQKQIDDLRAKIKEI 187
                 68899999*******997 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00045
     UPF0184  13 edgaeteedefgeeEyeainsmLDqinsaLDa 44 
                 +d+ e  e+++ +eEy+ i s LD+i +  D+
  CCE28038.1 188 KDTVEDPEQKALSEEYNKIQSELDAIKAEQDE 219
                 67888999******************987775 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.17   7.4e+02      16      30 ..     126     140 ..     111     149 .. 0.60
   2 ?    0.9   0.2      0.14   6.2e+02       2      28 ..     133     159 ..     132     167 .. 0.85
   3 ?    9.6   0.2   0.00026       1.2      10      39 ..     164     193 ..     155     194 .. 0.83
   4 ?    4.5   0.4      0.01        46       5      35 ..     199     229 ..     196     263 .. 0.89
   5 ?   -0.9   0.2      0.49   2.2e+03      18      32 ..     429     443 ..     407     450 .. 0.62
   6 ?   -1.3   0.4      0.67     3e+03      15      32 ..     451     468 ..     432     470 .. 0.47

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.17
   FlaC_arch  16 letvkkeneelsksv 30 
                 +e + +++ +++k+v
  CCE28038.1 126 IEDLDRQIAQIEKEV 140
                 344444444444444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.14
   FlaC_arch   2 idelEnklsklsteletvkkeneelsk 28 
                 i ++E+++++  ++l   kk ++++s+
  CCE28038.1 133 IAQIEKEVNSGAMKLVDEKKALSDMSN 159
                 6789*********99999999998875 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00026
   FlaC_arch  10 sklsteletvkkeneelsksveelkenVkd 39 
                  k   +++ ++k++++l+ +++e+k++V+d
  CCE28038.1 164 RKNFGQFDDAQKQIDDLRAKIKEIKDTVED 193
                 4444588999******************86 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.01
   FlaC_arch   5 lEnklsklsteletvkkeneelsksveelke 35 
                 l ++ +k+++el+ +k+e++e  k +  l +
  CCE28038.1 199 LSEEYNKIQSELDAIKAEQDEAFKGISSLRD 229
                 6788999************998888777765 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.49
   FlaC_arch  18 tvkkeneelsksvee 32 
                   ++++e+ +k++e+
  CCE28038.1 429 QTQRNIEKAKKELEK 443
                 345566666666665 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 0.67
   FlaC_arch  15 eletvkkeneelsksvee 32 
                 + +t  ++  e+ +svee
  CCE28038.1 451 NTTTNGDKVAEVTQSVEE 468
                 333334444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3160  (0.176251); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.54
# Mc/sec: 2666.57
//
Query:       CCE28039.1  [L=232]
Description: probable DNA-directed RNA polymerase chain RPB5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-33  114.0   0.1    1.4e-32  111.4   0.1    2.1  2  RNA_pol_Rpb5_C  RNA polymerase Rpb5, C-terminal domain
    2.4e-26   92.1   0.0    3.9e-26   91.5   0.0    1.3  1  RNA_pol_Rpb5_N  RNA polymerase Rpb5, N-terminal domain
      0.004   17.2   0.0       0.02   14.9   0.0    2.0  3  Mrr_cat         Restriction endonuclease


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb5_C  RNA polymerase Rpb5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.18   1.1e+03      49      69 ..       8      28 ..       5      31 .. 0.86
   2 !  111.4   0.1   2.3e-36   1.4e-32       1      73 []     159     231 ..     159     231 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.18
                    --TTSEEEEEEEETTTEEEEE CS
  RNA_pol_Rpb5_C 49 lkkGdvvkItrksetageavt 69
                    +k+ +vv+  r  +t+ e+v+
      CCE28039.1  8 AKSKEVVRLWRAWRTVHEMVA 28
                    79999******9999999875 PP

  == domain 2  score: 111.4 bits;  conditional E-value: 2.3e-36
                     ..-TSSSS--EEEEE-HHHHHHHHHHTT--TTCSS-EETTSHHHHCCT--TTSEEEEEEEETTTEEEEEEEEE CS
  RNA_pol_Rpb5_C   1 vnitkHelvPkhevlseeekkellkklkikeeqLPkisksDpvarylglkkGdvvkItrksetageavtYRlV 73 
                     vnit+HelvP+h++ls+eek +llk++++ke+qLP+i+++Dpvarylglk+G+vvkI+r setag++ +YRl+
      CCE28039.1 159 VNITRHELVPRHVLLSREEKTALLKRYRLKETQLPRILQKDPVARYLGLKRGQVVKIIRVSETAGRYASYRLC 231
                     7**********************************************************************96 PP

>> RNA_pol_Rpb5_N  RNA polymerase Rpb5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.0   6.5e-30   3.9e-26       2      87 ..      11     114 ..      10     116 .. 0.94

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 6.5e-30
                     HHHHHHHHHHCCCCCCCCCCCEE--CCCCT--CHHHHCCSB-SSSSB-GCCT-EEEE...............SS.SS...--EEEEEE-SSTTE- CS
  RNA_pol_Rpb5_N   2 reikrlfrirrTvleMlkdRgYlvaeeelnisleeFkekygdepkevdrekltisas...............kkddp...seqilVfFpeekkvg 78 
                     +e+ rl+r++rTv+eM++dR Y++a+ee+nisl++F+++y++ ++++ r+kl++sa+               +++dp   ++ i+V+F +ek+ g
      CCE28039.1  11 KEVVRLWRAWRTVHEMVADRDYELADEEVNISLDRFRDEYCNPDGSIIRSKLQFSARpsdamlrkntppateSNPDPvpdCGPIWVEFLTEKTFG 105
                     7999***********************************************************9999998775566688999************* PP

                     TCCCHHHCH CS
  RNA_pol_Rpb5_N  79 vktikkyae 87 
                     v +i+++a+
      CCE28039.1 106 VGQIRQFAK 114
                     *******86 PP

>> Mrr_cat  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.2   7.2e+03      64      90 ..      21      47 ..      19      49 .. 0.75
   2 !   14.9   0.0   3.3e-06      0.02      58     102 ..     101     145 ..      86     159 .. 0.84
   3 ?   -1.3   0.0      0.37   2.2e+03      55      98 ..     183     227 ..     179     229 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
                HHHHHHHHHCTTS..SEEEEEESS-B- CS
     Mrr_cat 64 keVqeligalkkrgadkgifvttsdft 90
                + V+e+++  +++ ad+ + ++ ++f 
  CCE28039.1 21 RTVHEMVADRDYELADEEVNISLDRFR 47
                568888888888888888888888876 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3.3e-06
                 TS-B-HHHHHHHHHHCTTS..SEEEEEESS-B-HHHHHHHHTT-- CS
     Mrr_cat  58 knkvgvkeVqeligalkkrgadkgifvttsdftkaAreeaeelnk 102
                 +++ gv +++++++   ++++++gi vt +++++aAr+  +++++
  CCE28039.1 101 EKTFGVGQIRQFAKYTITNHYKTGIMVTHASLSPAARKSLASVEN 145
                 578899*******************************88766443 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.37
                 E--T.S-B-HHHHHHHHHHCTTS..SEEEEEESS-B-HHHHHHHH CS
     Mrr_cat  55 Kryk.nkvgvkeVqeligalkkrgadkgifvttsdftkaAreeae 98 
                 Kry+ ++++ + + +   ++ + g ++g +v + ++++ A ++a+
  CCE28039.1 183 KRYRlKETQLPRILQKDPVARYLGLKRGQVVKIIRVSETAGRYAS 227
                 777667777777777777778888899999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1621.40
//
Query:       CCE28040.1  [L=496]
Description: uncharacterized protein CPUR_01514 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.7   1.1       0.31   11.2   0.8    2.0  1  COX2_TM   Cytochrome C oxidase subunit II, transmembrane doma


Domain annotation for each model (and alignments):
>> COX2_TM  Cytochrome C oxidase subunit II, transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.8   1.7e-05      0.31      35      82 ..     114     161 ..      87     165 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.7e-05
     COX2_TM  35 lilVlyilvlilvefrrrknkitakylvhgqeiEiiWTiiPalilili 82 
                     l+il  +++ f +r  ++t +   h+  i i WT++ +++ +++
  CCE28040.1 114 YAATLWILKFCILGFLKRLTDLTWQRSHHAALIAIRWTLVITFVGVTV 161
                 55678**********************************988887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3803.25
//
Query:       CCE28041.1  [L=344]
Description: uncharacterized protein CPUR_01515 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-18   66.6   0.0    3.6e-18   65.9   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    3.5e-11   43.7   0.0    1.2e-10   42.0   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    1.2e-09   38.7   0.0    3.6e-09   37.2   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
    1.3e-06   29.1   0.0      1e-05   26.2   0.0    2.4  1  Methyltransf_12  Methyltransferase domain
    1.1e-05   25.2   0.0    0.00033   20.5   0.0    2.2  1  Methyltransf_31  Methyltransferase domain
    1.4e-05   24.5   0.0     0.0002   20.7   0.0    2.2  1  Methyltransf_2   O-methyltransferase domain
     0.0006   20.0   0.0      0.042   14.0   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
     0.0012   18.5   0.0     0.0023   17.5   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0012   18.3   0.0     0.0017   17.8   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0041   16.9   0.0      0.012   15.4   0.0    1.7  2  Methyltransf_16  Lysine methyltransferase
     0.0056   16.0   0.0       0.11   11.9   0.0    2.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.022   14.5   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
      0.024   14.1   0.0      0.044   13.2   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
       0.04   13.6   0.0      0.093   12.5   0.0    1.7  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   2.8e-21   3.6e-18      15     127 ..     102     216 ..      89     261 .. 0.76

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 2.8e-21
  Methyltransf_23  15 rllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrq 104
                      +l+p  +++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ + ++ ++d +   +++ ++++fd+I+ r   + ++d++ ll+ 
       CCE28041.1 102 FLAPLdKDKVHRVLDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWLPpNVRFEIDDAT--LQWTWNADYFDFIHIRLIVGGIEDWTGLLKE 193
                      45554346667*******************87779*************9776666666666..67888************************** PP

  Methyltransf_23 105 iatllkpgGylllseplaslked 127
                      ++++++pgG+++  e +++  +d
       CCE28041.1 194 AYRCCAPGGWVESVEMDVEYRSD 216
                      ***************88776333 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0     9e-14   1.2e-10       1      97 []     114     202 ..     114     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 9e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + +          +nv+f+  da  ++  +++ fD+++++  l +   ed+  +lke++r++
       CCE28041.1 114 VLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWL-------PPNVRFEIDDAtLQWTWNADYFDFIHIR--LIVGGIEDWTGLLKEAYRCC 198
                      9******************99**********998754.......45789*9999977899999********6..44556679************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28041.1 199 APGG 202
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   2.8e-12   3.6e-09       1      94 [.     115     204 ..     115     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 2.8e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + ++        + +v+f   da+ +   + ++fD++ ++  +  +ed+  +lke++R++ pg
       CCE28041.1 115 LDVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWLP------P-NVRFEIDDATlQWTWNADYFDFIHIRLIVGGIEDWTGLLKEAYRCCAPG 201
                      8**************9999**************8882......2.377777777745689999******************************* PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28041.1 202 GWV 204
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   7.9e-09     1e-05       1      99 []     115     204 ..     115     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 7.9e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +      ++++++ + +++++          ++fD +++   +  ++d+  +l++++++++
       CCE28041.1 115 LDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWLPPNVRFEIDDATLQWTWN---------ADYFDFIHIRLIVGGIEDWTGLLKEAYRCCA 199
                      8*******************************9333444444443333333333.........36***************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28041.1 200 PGGWV 204
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.6e-07   0.00033       3     116 ..     110     213 ..     108     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.6e-07
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsnevlnaladpdkil 94 
                      k  rvlD+G+G+G  ++e+a   +p+a v+G D s+            + l  nv+Fe+ d++      ++ + fD+i+ + ++  + d    l
       CCE28041.1 110 KVHRVLDVGTGSGIWAIEFA-DQFPNASVIGTDLSPCQP---------QWLPpNVRFEIDDATLqWT--WNADYFDFIHIRLIVGGIEDWTGLL 191
                      5569****************.669**********99533.........2333399999999999566..9999999999999999999999999 PP

  Methyltransf_31  95 eeiervlkpggilliedprlla 116
                      +e+ r   pgg + + ++++++
       CCE28041.1 192 KEAYRCCAPGGWVESVEMDVEY 213
                      9999999999988777777554 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.6e-07    0.0002      16     194 ..      56     239 ..      45     259 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.6e-07
                     .HHHHHS--....HHHHHTSSHHHHHHHHHHHHTTHHHH..HHH..HHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHH CS
  Methyltransf_2  16 ifkkafGis....lfeaikrdeeerakfnkglqessslv..akk..vleafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAk 102
                      +++++G++     f+ ++  ++ +++  +   ++ sl+   ++   l+  d  ++++++DvG G+G  a + + ++P+ +vi  Dl+      +
      CCE28041.1  56 EYRRVHGRTyhsdKFTTNYFIPNDDQQLESVELNHHSLTilFDDqlFLAPLDKDKVHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSPC---QP 147
                     4788888877777888888877777777766555555431144411466777899********************************865...34 PP

                     HHS-----TTEEEEES-TTTS-----SEE...EEESSGGGS-HHHHHHHHHHHHHH--TT-EEEEEE----TTS--...-HHHHHHHHHHHHCSS CS
  Methyltransf_2 103 ehlsageeervefvgGdffkdslPeaDai...llkrvlhDwsdekcvklLkrvkkalpagGkvivveavlgadpsg...eletelvdlimlvqte 191
                     +     + ++v+f   d   +   +aD +    +  ++     e+ + lLk+ ++ + +gG v  ve+ ++ + ++   ele  l ++ +l+ + 
      CCE28041.1 148 QW----LPPNVRFEIDDATLQWTWNADYFdfiHIRLIVGG--IEDWTGLLKEAYRCCAPGGWVESVEMDVEYRSDDgttELEPVLASVGVLFREA 236
                     55....3445555555555455555555410044444443..34456799999999999999999999876655440004444455888888888 PP

                     --- CS
  Methyltransf_2 192 Gke 194
                     Gk+
      CCE28041.1 237 GKV 239
                     876 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.3e-05     0.042      21      73 ..     110     164 ..      87     177 .. 0.85
   2 ?    3.7   0.0     0.045        57      29      39 ..     197     207 ..     195     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.3e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCCS CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditdp 73 
                 ++++v+D+g + G w+   + ++ + + v++ Dl p++p    p+v++   d t +
  CCE28041.1 110 KVHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwlpPNVRFEIDDATLQ 164
                 7799***********9999999875.9**********9988889999988777765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.045
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28041.1 197 CCAPGGWVESV 207
                 9******9876 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.8e-06    0.0023      21      64 ..     100     143 ..      97     146 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.8e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v  +d +
  CCE28041.1 100 QLFLAPLDKDKVHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 143
                 789999****99************************99988865 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.3e-06    0.0017     162     195 ..     111     145 ..      96     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.3e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                  ++vlDvGtGSGi ai  a ++  ++v+++D+ + 
  CCE28041.1 111 VHRVLDVGTGSGIWAIEfADQFPNASVIGTDLSPC 145
                 469*************7477999********9886 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.3     3e+03     122     153 ..      17      48 ..       8      66 .. 0.74
   2 !   15.4   0.0   9.2e-06     0.012      44     107 ..     108     165 ..      85     182 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.3
  Methyltransf_16 122 DlilaaDcvYledslelLvkvLkellkkeskv 153
                      Dli a D+v    ++ +  ++L+ + +++s+ 
       CCE28041.1  17 DLIPAKDVVCVRVTFYMSSNLLTSCRSQSSTA 48 
                      88999999998888888888888888877763 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 9.2e-06
  Methyltransf_16  44 elsklsvlELGsGtGlvGlavaellpeakviltDleell.ellkknielnknalkskvkvevLdW 107
                      + +  +vl++G G+G+  + +a + p+a+vi tDl+  + + l  n+         ++   +L+W
       CCE28041.1 108 KDKVHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQpQWLPPNVRF-------EIDDATLQW 165
                      566789*****************************99651467777776.......344455555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   8.3e-05      0.11      49     154 ..     112     209 ..     100     215 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.3e-05
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE-.-TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqa.naeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                      ++vlDv +G+g +a++++d+   +  v++ D+++   +     l      n++f     + +   + d fD++ +   +  + D +  Lkeayr
       CCE28041.1 112 HRVLDVGTGSGIWAIEFADQFP-NASVIGTDLSPCQPQW----LP----PNVRFEIDdATLQWTWNADYFDFIHIRLIVGGIEDWTGLLKEAYR 196
                      5789999999999999999875.4678889988753322....22....25555443044567788899************************* PP

                      HEEEEEEEEEEEE CS
  Ubie_methyltran 142 vlkpGGrlvvlef 154
                         pGG +  +e+
       CCE28041.1 197 CCAPGGWVESVEM 209
                      *******999886 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.7e-05     0.022      24      59 ..     109     144 ..     100     159 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.7e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE28041.1 109 DKVHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSP 144
                 34569**********************999999765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.5e-05     0.044       5      33 ..     114     142 ..     110     146 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.5e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28041.1 114 VLDVGTGSGIWAIEFADQFPNASVIGTDL 142
                     89************************876 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.2e-05     0.093      69     103 ..     106     139 ..      99     227 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.2e-05
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 l+ +k+ rvL+vG+GsG+ +  +a  + +   v++
  CCE28041.1 106 LDKDKVHRVLDVGTGSGIWAIEFADQFPNAS-VIG 139
                 5567899************999998776655.666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2416.90
//
Query:       CCE28042.1  [L=316]
Description: uncharacterized protein CPUR_01516 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-18   65.0   0.0    1.1e-17   64.3   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    9.5e-11   42.3   0.0    2.7e-10   40.8   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    7.4e-09   36.2   0.0    1.5e-08   35.2   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    1.4e-06   29.0   0.0    1.8e-05   25.4   0.0    2.6  2  Methyltransf_12  Methyltransferase domain
    0.00024   20.5   0.0     0.0032   16.8   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00033   20.5   0.0        0.1   12.4   0.0    2.2  2  Methyltransf_31  Methyltransferase domain
    0.00066   19.8   0.0       0.16   12.0   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
     0.0011   18.4   0.0      0.052   12.8   0.0    2.1  2  Methyltransf_2   O-methyltransferase domain
     0.0012   18.3   0.0      0.002   17.6   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0016   18.0   0.0     0.0032   17.1   0.0    1.4  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.024   14.4   0.0      0.037   13.8   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
      0.028   13.9   0.0      0.047   13.2   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
      0.074   12.8   0.0       0.13   12.0   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
       0.21   10.9   0.0       0.32   10.3   0.0    1.2  1  GidB             rRNA small subunit methyltransferase G


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   8.8e-21   1.1e-17      14     160 ..      73     231 ..      56     233 .. 0.70

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 8.8e-21
  Methyltransf_23  14 erllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.eaaepqgkfdlIvlrevlehvpdppell 102
                      ++l+p l++++  rv+d+G+G+Gi++ ++++++   sv+g Dlsp + +++  +++ +++  d+  e++ ++++fd+I+ r+ ++ ++d+++ll
       CCE28042.1  73 LFLAP-LEKDKihRVIDVGTGSGIWAIEFADRFPntSVIGTDLSPCQPQWV--PPNLRFEIDDAGlEWTWNANYFDFIHIRYIMGGIQDWTALL 163
                      45555.4444456****************99987779*********99998..55555555544436667999********************* PP

  Methyltransf_23 103 rqiatllkpgGylllseplaslkedrllld........wlylvpagrhi..sffsarslkelleeaGl 160
                      + ++++++pgG++   e +++  +d    d          + ++ag+ +   ff  +  ++++ eaG+
       CCE28042.1 164 KEAYRCCAPGGWVQSVEMDVNYRSDDGTTDlepvlasfGDLFREAGEILnrPFFVHDLQRQAFDEAGF 231
                      *************9999887763333333211221111233355554444455554444445566665 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   2.1e-13   2.7e-10       1      97 []      86     174 ..      86     174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 2.1e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      v+d+G+G+G +++++a+r+++ +v+g+D+s+ + + +         n++f+  da  ++  +++ fD++++++ +  +  +d+ ++lke++r++
       CCE28042.1  86 VIDVGTGSGIWAIEFADRFPNTSVIGTDLSPCQPQWVPP-------NLRFEIDDAgLEWTWNANYFDFIHIRYIMGGI--QDWTALLKEAYRCC 170
                      89*****************99**********99887655.......569999999999*************8666665..59************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28042.1 171 APGG 174
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.2e-11   1.5e-08       2      94 ..      88     176 ..      87     177 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.2e-11
                      EET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      dvG+G+G+ a ++a+r+  ++v+g+Dls+ + +++  +       ++f   da  +   + n+fD++ ++  +  ++d+ ++lke++R++ pgG
       CCE28042.1  88 DVGTGSGIWAIEFADRFpnTSVIGTDLSPCQPQWVPPN-------LRFEIDDAGlEWTWNANYFDFIHIRYIMGGIQDWTALLKEAYRCCAPGG 174
                      9*************9999**************999443.......4444444443468************************************ PP

                      EE CS
  Methyltransf_11  93 ll 94 
                      ++
       CCE28042.1 175 WV 176
                      85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.4e-08   1.8e-05       2      99 .]      88     176 ..      87     176 .. 0.84
   2 ?   -2.4   0.0       6.4   8.2e+03       5      17 ..     253     265 ..     253     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.4e-08
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLkp 95 
                      ++G+G+G  + ++++++p+++++g+D+sp + +     l++++++   +++++a         ++fD +++   +  ++d+ ++l++++++++p
       CCE28042.1  88 DVGTGSGIWAIEFADRFPNTSVIGTDLSPCQPQWVPPNLRFEIDDAGLEWTWNA---------NYFDFIHIRYIMGGIQDWTALLKEAYRCCAP 172
                      9******************************94455555555544444444443.........59***************************** PP

  Methyltransf_12  96 gGrl 99 
                      gG++
       CCE28042.1 173 GGWV 176
                      **85 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.4
  Methyltransf_12   5 cGtGsllrallek 17 
                      +G+G++l+a le+
       CCE28042.1 253 AGVGRFLKAALEN 265
                      799**99999987 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.5e-06    0.0032      49     154 ..      84     181 ..      26     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.5e-06
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEE.EE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinief.lqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                      ++v+Dv +G+g +a++++d   +   v++ D+++   +            n++f +   + e   + + fD++ + + +  + D +  Lkeayr
       CCE28042.1  84 HRVIDVGTGSGIWAIEFADRFPN-TSVIGTDLSPCQPQWVPP--------NLRFeIDDAGLEWTWNANYFDFIHIRYIMGGIQDWTALLKEAYR 168
                      47899999999999999998865.568899998865444333........33332346788899999*************************** PP

                      HEEEEEEEEEEEE CS
  Ubie_methyltran 142 vlkpGGrlvvlef 154
                         pGG +  +e+
       CCE28042.1 169 CCAPGGWVQSVEM 181
                      ********99996 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     8e-05       0.1       5      38 ..      84     116 ..      80     118 .. 0.88
   2 !    5.9   0.0     0.008        10      55     113 ..     125     182 ..     120     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8e-05
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rv+D+G+G+G  ++e+a++ +p+  v+G D s+
       CCE28042.1  84 HRVIDVGTGSGIWAIEFADR-FPNTSVIGTDLSP 116
                      68****************66.799*******986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.008
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      n++Fe+ d+       ++ + fD+i+ + ++  + d  + l+e+ r   pgg + + +++
       CCE28042.1 125 NLRFEIDDAGLeWT--WNANYFDFIHIRYIMGGIQDWTALLKEAYRCCAPGGWVQSVEMD 182
                      88999999988444..999*********************************98877777 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00013      0.16      21      63 ..      82     126 ..      45     140 .. 0.83
   2 ?    5.5   0.0     0.013        16      29      39 ..     169     179 ..     167     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTE CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgv 63 
                 + ++v+D+g + G w+   + r+ + + v++ Dl p++p    p++
  CCE28042.1  82 KIHRVIDVGTGSGIWAIEFADRFPN-TSVIGTDLSPCQPQwvpPNL 126
                 6799******************976.***********987665555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.013
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw q +
  CCE28042.1 169 CCAPGGWVQSV 179
                 9********87 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.1e-05     0.052      58      95 ..      78     115 ..      27     131 .. 0.81
   2 ?    3.5   0.0     0.028        36     146     177 ..     160     191 ..     145     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-05
                     S-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  58 fdleglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                      +  ++++++DvG G+G  a + +  +P+ +vi  Dl+
      CCE28042.1  78 LEKDKIHRVIDVGTGSGIWAIEFADRFPNTSVIGTDLS 115
                     4456899**************************99985 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.028
                     HHHHHHHHHH--TT-EEEEEE----TTS---H CS
  Methyltransf_2 146 vklLkrvkkalpagGkvivveavlgadpsgel 177
                     + lLk+ ++ + +gG v  ve+ ++ + ++ +
      CCE28042.1 160 TALLKEAYRCCAPGGWVQSVEMDVNYRSDDGT 191
                     579******************98887766544 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.5e-06     0.002     162     194 ..      83     116 ..      69     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.5e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++v+DvGtGSGi ai  a ++   +v+++D+ +
  CCE28042.1  83 IHRVIDVGTGSGIWAIEfADRFPNTSVIGTDLSP 116
                 369*************747799*********987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.5e-06    0.0032      21      64 ..      72     115 ..      63     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.5e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++v+D+G+G G+ ++++a++ p+++v  +d +
  CCE28042.1  72 QLFLAPLEKDKIHRVIDVGTGSGIWAIEFADRFPNTSVIGTDLS 115
                 789999****9999*********************999988865 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.9e-05     0.037      29      82 ..      62     118 ..      55     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.9e-05
  Methyltransf_16  29 vkylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                       +y++  l ++    + ++ +  +v+++G G+G+  + +a   p+++vi tDl+  +
       CCE28042.1  62 HHYMKILLDDQlflAPLEKDKIHRVIDVGTGSGIWAIEFADRFPNTSVIGTDLSPCQ 118
                      556665555556665667778899****************************98765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.7e-05     0.047       5      33 ..      86     114 ..      82     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.7e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     v+++G+G+G + ++ A ++P+++++G ++
      CCE28042.1  86 VIDVGTGSGIWAIEFADRFPNTSVIGTDL 114
                     89************************876 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0001      0.13      24      59 ..      81     116 ..      73     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rv+++++G+G  A+ fA ++pn   + +d  +
  CCE28042.1  81 DKIHRVIDVGTGSGIWAIEFADRFPNTSVIGTDLSP 116
                 44569**********************999999765 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00025      0.32      24      67 ..      58     101 ..      40     110 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00025
                 --SHHHHHHHCHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHH CS
        GidB  24 ikepeellerhlldslsvlellkekrdkviDvGsGaGlPGipLa 67 
                 ++  +  ++  l d l +++l k+k ++viDvG+G G+ +i  a
  CCE28042.1  58 VELSHHYMKILLDDQLFLAPLEKDKIHRVIDVGTGSGIWAIEFA 101
                 5544444555555677777777777768*********9888666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2370.28
//
Query:       CCE28043.1  [L=340]
Description: uncharacterized protein CPUR_01517 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-23   80.9   0.0    1.4e-22   80.2   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    7.8e-12   45.7   0.0    2.1e-11   44.4   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    5.3e-10   39.8   0.0    1.1e-09   38.8   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    5.2e-08   33.5   0.0    4.6e-07   30.5   0.0    2.4  1  Methyltransf_12  Methyltransferase domain
    3.9e-07   30.0   0.0    1.3e-05   25.1   0.0    2.2  1  Methyltransf_31  Methyltransferase domain
    7.2e-05   22.2   0.0    0.00036   19.9   0.0    2.0  1  Methyltransf_2   O-methyltransferase domain
    0.00033   20.8   0.0      0.015   15.4   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
    0.00057   19.7   0.0    0.00098   18.9   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
    0.00062   19.4   0.0     0.0015   18.1   0.0    1.6  1  MTS              Methyltransferase small domain
     0.0012   18.3   0.0      0.002   17.6   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0021   17.5   0.0     0.0049   16.3   0.0    1.6  1  Methyltransf_4   Putative methyltransferase
     0.0075   15.6   0.0        0.1   11.9   0.0    2.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.034   13.9   0.0      0.056   13.2   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
        0.1   12.3   0.0       0.17   11.6   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.12   11.7   0.0       0.22   10.8   0.0    1.6  1  CMAS             Mycolic acid cyclopropane synthetase
       0.13   11.6   0.0        0.2   11.0   0.0    1.2  1  GidB             rRNA small subunit methyltransferase G


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   1.3e-25   1.4e-22      15     160 ..      97     254 ..      83     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.3e-25
  Methyltransf_23  15 rllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.eaaepqgkfdlIvlrevlehvpdppellrq 104
                      +l+p  +++  rvLdiG+G+Gi++ +l++++   sv+g Dlsp + +++  +++ q++  d+  +++ ++++fd+I+lr+ l+ ++d++ ll+ 
       CCE28043.1  97 FLAPLeNDKIHRVLDIGTGSGIWAIELADQFPnaSVIGTDLSPCQPQWV--PPNVQFEVDDATlQWTWNANHFDFIHLRYILGGIQDWTGLLKE 188
                      45543245556*******************87779*************7..66666666666546777999*********************** PP

  Methyltransf_23 105 iatllkpgGylllseplasl........kedrllldw.lylvpagrhi..sffsarslkelleeaGl 160
                      ++++++pgG+++  e + +          e  l+  w ++ ++ag+ +   ff  ++ ++++ eaG+
       CCE28043.1 189 AYKCCAPGGWVESVECDIEFrsddgtteLEPVLFS-WgELFREAGKILnrPFFVQEQQRQAFDEAGF 254
                      ***************77666555566542333333.4377777754447799999***********9 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   1.9e-14   2.1e-11       1      97 []     109     197 ..     109     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 1.9e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G ++++la+++++a+v+g+D+s+ + + +        +nv+f++ da  ++  ++++fD++++++ l  ++  d+  +lke+++++
       CCE28043.1 109 VLDIGTGSGIWAIELADQFPNASVIGTDLSPCQPQWVP-------PNVQFEVDDAtLQWTWNANHFDFIHLRYILGGIQ--DWTGLLKEAYKCC 193
                      9******************99**********9987653.......5789******77899***********87777665..9************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28043.1 194 APGG 197
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   9.7e-13   1.1e-09       1      94 [.     110     199 ..     110     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 9.7e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+G+G+G+ a +la+++  a+v+g+Dls+ + +++     ++  +v+f v da+ +   + n fD++ ++  l  ++d+  +lke+++++ pg
       CCE28043.1 110 LDIGTGSGIWAIELADQFpnASVIGTDLSPCQPQWV-----PP--NVQFEVDDATlQWTWNANHFDFIHLRYILGGIQDWTGLLKEAYKCCAPG 196
                      8**************9999*************9888.....33..48888999995569*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28043.1 197 GWV 199
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   4.1e-10   4.6e-07       1      99 []     110     199 ..     110     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 4.1e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L+iG+G+G  + +l++++p+++++g+D+sp +         ++ +  n ++e+++  l  +   ++fD +++   l  ++d+  +l++++k+++
       CCE28043.1 110 LDIGTGSGIWAIELADQFPNASVIGTDLSPCQP--------QWVP-PNVQFEVDDATLQWTWNANHFDFIHLRYILGGIQDWTGLLKEAYKCCA 194
                      8******************************99........4543.33333444333333333389**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28043.1 195 PGGWV 199
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.1e-08   1.3e-05       5     113 ..     107     205 ..     103     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.1e-08
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkileei 97 
                       rvlD+G+G+G  ++ela   +p+a v+G D s+   +            nv+Fe+ d++      ++ + fD+i+ + +l  + d    l+e+
       CCE28043.1 107 HRVLDIGTGSGIWAIELA-DQFPNASVIGTDLSPCQPQWVPP--------NVQFEVDDATLqWT--WNANHFDFIHLRYILGGIQDWTGLLKEA 189
                      68****************.669***********965544444........9*********9666..999************************* PP

  Methyltransf_31  98 ervlkpggilliedpr 113
                       +   pgg + + +++
       CCE28043.1 190 YKCCAPGGWVESVECD 205
                      ********99988888 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.2e-07   0.00036      17     175 ..      52     212 ..      40     254 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.2e-07
                     HHHHHS--....HHHHHTSSHHHHHHHHHHHHTTH..HHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHH CS
  Methyltransf_2  17 fkkafGis....lfeaikrdeeerakfnkglqess..slvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAke 103
                     +++++G++     f+ ++  ++ +++  +g  ++   ++  ++ l        ++++++D+G G+G  a + + ++P+ +vi  Dl+      ++
      CCE28043.1  52 YRRIHGRTyhsdKFTTNYLYPNDEQQLESGRLNHHylTILFEDQLFLAPleNDKIHRVLDIGTGSGIWAIELADQFPNASVIGTDLSPC---QPQ 143
                     777777776666999999999999999999888761244556655555411678********************************864...344 PP

                     HS-----TTEEEEES-TTTS-----SEEEEESSGGGS-HHHHHHHHHHHHHH--TT-EEEEEE----TTS-- CS
  Methyltransf_2 104 hlsageeervefvgGdffkdslPeaDaillkrvlhDwsdekcvklLkrvkkalpagGkvivveavlgadpsg 175
                      + ++ + +v+    +    +  + D i l  +l   +d   + lLk+ +k + +gG v  ve+ ++ + ++
      CCE28043.1 144 WVPPNVQFEVDDATLQWT-WNANHFDFIHLRYILGGIQDW--TGLLKEAYKCCAPGGWVESVECDIEFRSDD 212
                     522222222222222222.344456889999998776664..468999999999999998888877665544 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-05     0.015      21      72 ..     105     158 ..      82     170 .. 0.85
   2 ?    3.1   0.0     0.083        93      29      38 ..     192     201 ..     189     223 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCC CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditd 72 
                 + ++v+D+g + G w+  l+ ++ + + v++ Dl p++p    p+v++   d t 
  CCE28043.1 105 KIHRVLDIGTGSGIWAIELADQFPN-ASVIGTDLSPCQPQwvpPNVQFEVDDATL 158
                 6689******************976.***********998888999987777665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.083
                 T-TTSHHHHH CS
        FtsJ  29 gaaPGgwsqv 38 
                 ++aPGgw + 
  CCE28043.1 192 CCAPGGWVES 201
                 9******985 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   8.7e-07   0.00098      25     107 ..      81     160 ..      77     177 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 8.7e-07
  Methyltransf_16  25 avvlvkylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDleell.ellkknielnknalkskvkvevLdW 107
                      + +  +yl+   +++    + ++ +  +vl++G G+G+  + +a + p+a+vi tDl+  + + +  n++        +v   +L+W
       CCE28043.1  81 GRLNHHYLTILFEDQlflAPLENDKIHRVLDIGTGSGIWAIELADQFPNASVIGTDLSPCQpQWVPPNVQF-------EVDDATLQW 160
                      5566677777655557766678889999*****************************99661467778877.......344445555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.3e-06    0.0015      21      64 ..      95     138 ..      93     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.3e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l++++ ++vlD+G+G G+ +++la++ p+a+v  +d +
  CCE28043.1  95 QLFLAPLENDKIHRVLDIGTGSGIWAIELADQFPNASVIGTDLS 138
                 689999****9999***********************9998876 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.8e-06     0.002     162     196 ..     106     141 ..      94     199 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.8e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDevA 196
                  ++vlD+GtGSGi ai  a ++  ++v+++D+ +  
  CCE28043.1 106 IHRVLDIGTGSGIWAIElADQFPNASVIGTDLSPCQ 141
                 469*************7477999********99875 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.4e-06    0.0049       5      33 ..     109     137 ..     105     141 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.4e-06
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl+iG+G+G + ++lA ++P+ +++G ++
      CCE28043.1 109 VLDIGTGSGIWAIELADQFPNASVIGTDL 137
                     89************************876 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   9.1e-05       0.1      49     153 ..     107     203 ..      93     208 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.1e-05
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--.TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqan.aeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                      ++vlD+ +G+g +a++l+d+   +  v++ D+++   +            n++f + + + +   + + fD++ + + l  + D +  Lkeay+
       CCE28043.1 107 HRVLDIGTGSGIWAIELADQFP-NASVIGTDLSPCQPQWV--------PPNVQFEVDDaTLQWTWNANHFDFIHLRYILGGIQDWTGLLKEAYK 191
                      5789999999999999999985.56789999988543322........23666644440457778889************************** PP

                      HEEEEEEEEEEE CS
  Ubie_methyltran 142 vlkpGGrlvvle 153
                         pGG +  +e
       CCE28043.1 192 CCAPGGWVESVE 203
                      ******999887 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     5e-05     0.056      24      59 ..     104     139 ..      96     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL+i++G+G  A+ +A ++pn+  + +d  +
  CCE28043.1 104 DKIHRVLDIGTGSGIWAIELADQFPNASVIGTDLSP 139
                 45569**********************999999765 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.17      67     103 ..      99     134 ..      51     140 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                 HHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  67 ellelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                   le +k  rvL++G+GsG+ +  la  + +   v++
  CCE28043.1  99 APLENDKIHRVLDIGTGSGIWAIELADQFPNAS-VIG 134
                 446668899***********9998887775554.555 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00019      0.22      60     105 ..     103     149 ..      51     169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
                 --TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHH CS
        CMAS  60 lkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrv 105
                  ++ +++LdiG+G G  +++ ++++ +++v+g  lS  q +++  +v
  CCE28043.1 103 NDKIHRVLDIGTGSGIWAIELADQFpNASVIGTDLSPCQPQWVPPNV 149
                 555679******************9789********99988876555 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018       0.2      28      74 ..      85     131 ..      63     135 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                 HHHHHHCHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHHHH-TTSE CS
        GidB  28 eellerhlldslsvlellkekrdkviDvGsGaGlPGipLaiarpelk 74 
                 +  l+  + d l +++l ++k ++v+D+G+G G+ +i La  +p+ +
  CCE28043.1  85 HHYLTILFEDQLFLAPLENDKIHRVLDIGTGSGIWAIELADQFPNAS 131
                 555555566777777776666668*************9997777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2372.78
//
Query:       CCE28044.1  [L=174]
Description: uncharacterized protein CPUR_01518 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1217.08
//
Query:       CCE28045.1  [L=341]
Description: uncharacterized protein CPUR_01519 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-20   73.7   0.0    2.4e-20   73.0   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
      2e-12   47.7   0.0    6.7e-12   46.0   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    8.6e-11   42.3   0.0    2.7e-10   40.7   0.0    1.8  2  Methyltransf_11  Methyltransferase domain
    1.4e-07   32.2   0.0    1.5e-06   28.9   0.0    2.4  1  Methyltransf_12  Methyltransferase domain
      2e-06   27.7   0.0      0.051   13.4   0.0    2.4  2  Methyltransf_31  Methyltransferase domain
    0.00051   19.4   0.0     0.0083   15.5   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00052   19.5   0.0    0.00097   18.6   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0012   19.0   0.0      0.049   13.7   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
     0.0021   17.7   0.0     0.0039   16.7   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0084   15.9   0.0      0.013   15.2   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
     0.0091   15.3   0.0      0.019   14.3   0.0    1.5  1  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
      0.018   14.5   0.0      0.033   13.6   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.044   13.6   0.0      0.076   12.8   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
       0.12   12.1   0.0       0.19   11.5   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.13   11.5   0.0        1.2    8.3   0.0    2.3  2  CMAS             Mycolic acid cyclopropane synthetase
       0.19   11.1   0.0       0.29   10.4   0.0    1.2  1  GidB             rRNA small subunit methyltransferase G


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   2.2e-23   2.4e-20      15     127 ..      99     213 ..      85     256 .. 0.85

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 2.2e-23
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p l++++  rvLd+G+G+Gi++  +++++   sv+g Dlsp +  +++ + ++ ++d +   +++ ++++fd+I+ r+ l+ ++d+++ lr
       CCE28045.1  99 FLAP-LEKNKihRVLDVGTGSGIWAIDFADQFPhaSVIGTDLSPCQPRWVPpNVRFEIDDAT--LDWTWNANHFDFIHIRYILGGIQDWTAFLR 189
                      4555.4444445****************9997668**********99998666666666666..68888************************* PP

  Methyltransf_23 104 qiatllkpgGylllseplaslked 127
                       ++++++pgG+++ +e++++l++d
       CCE28045.1 190 EAYRCCAPGGWVESTEYDVELQSD 213
                      *****************9988544 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0     6e-15   6.7e-12       1      97 []     111     199 ..     111     199 .. 0.91

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 6e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +        +nv+f+  da  d+  ++++fD++++++ l  ++  d+ ++l+e++r++
       CCE28045.1 111 VLDVGTGSGIWAIDFADQFPHASVIGTDLSPCQPRWV-------PPNVRFEIDDAtLDWTWNANHFDFIHIRYILGGIQ--DWTAFLREAYRCC 195
                      9******************99**********887754.......35889*****9788*************87777665..9************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28045.1 196 APGG 199
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       9.6   1.1e+04      51      71 ..      32      52 ..      19      55 .. 0.61
   2 !   40.7   0.0   2.4e-13   2.7e-10       1      94 [.     112     201 ..     112     202 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 9.6
                     ECCCTSS-TT-EEEEEEES-C CS
  Methyltransf_11 51 daeklpfednsfDlvvssevl 71
                     d+ ++  ed+sf   +ss+ l
       CCE28045.1 32 DVDSVFSEDQSFTTSISSSIL 52
                     344444466666666666665 PP

  == domain 2  score: 40.7 bits;  conditional E-value: 2.4e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++     ++  +v+f   da+ +   + n fD++ ++  l  ++d+ ++l+e++R++ pg
       CCE28045.1 112 LDVGTGSGIWAIDFADQFphASVIGTDLSPCQPRWV-----PP--NVRFEIDDATlDWTWNANHFDFIHIRYILGGIQDWTAFLREAYRCCAPG 198
                      8**************9999*************9888.....33..37777788885678*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28045.1 199 GWV 201
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.3e-09   1.5e-06       1      99 []     112     201 ..     112     201 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1.3e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirevldnirk 91 
                      L++G+G+G  +  +++++p+++++g+D+sp +         ++ +  n ++e+++  l+        ++fD +++   l  ++d+ ++l+++++
       CCE28045.1 112 LDVGTGSGIWAIDFADQFPHASVIGTDLSPCQP--------RWVP-PNVRFEIDDATLDW---TwnaNHFDFIHIRYILGGIQDWTAFLREAYR 193
                      8******************************99........3332.22333333333333...334479************************* PP

  Methyltransf_12  92 lLkpgGrl 99 
                      +++pgG++
       CCE28045.1 194 CCAPGGWV 201
                      ******85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.5e-05     0.051       5      38 ..     109     141 ..     105     143 .. 0.90
   2 !   11.9   0.0   0.00013      0.14      55     113 ..     150     207 ..     147     253 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.5e-05
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++ +a   +p+a v+G D s+
       CCE28045.1 109 HRVLDVGTGSGIWAIDFA-DQFPHASVIGTDLSP 141
                      58****************.6689********987 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00013
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      nv+Fe+ d++      ++ + fD+i+ + +l  + d  ++l+e+ r   pgg + +++++
       CCE28045.1 150 NVRFEIDDATLdWT--WNANHFDFIHIRYILGGIQDWTAFLREAYRCCAPGGWVESTEYD 207
                      99*******99777..999*********************************99888887 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.4e-06    0.0083      49     153 ..     109     205 ..      98     209 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.4e-06
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE-.-TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqa.naeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                      ++vlDv +G+g +a++++d+   +  v++ D+++   +            n++f     + +   + + fD++ + + l  + D +  L+eayr
       CCE28045.1 109 HRVLDVGTGSGIWAIDFADQFP-HASVIGTDLSPCQPRWV--------PPNVRFEIDdATLDWTWNANHFDFIHIRYILGGIQDWTAFLREAYR 193
                      5789999999999999999875.56789999887543332........23556644404456778889************************** PP

                      HEEEEEEEEEEE CS
  Ubie_methyltran 142 vlkpGGrlvvle 153
                         pGG +   e
       CCE28045.1 194 CCAPGGWVESTE 205
                      ******997766 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   8.7e-07   0.00097     161     195 ..     107     142 ..      89     170 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 8.7e-07
        PrmA 161 egeevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                 + ++vlDvGtGSGi ai  a ++ +++v+++D+ + 
  CCE28045.1 107 KIHRVLDVGTGSGIWAIDfADQFPHASVIGTDLSPC 142
                 4479*************64789**********9885 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   4.4e-05     0.049      21      71 ..     107     159 ..      78     172 .. 0.84
   2 ?    3.0   0.0     0.089     1e+02      29      38 ..     194     203 ..     192     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.4e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CC CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdit 71 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p+   p+v++   d t
  CCE28045.1 107 KIHRVLDVGTGSGIWAIDFADQFPH-ASVIGTDLSPCQPRwvpPNVRFEIDDAT 159
                 6689***********9888888876.9************999999999777766 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.089
                 T-TTSHHHHH CS
        FtsJ  29 gaaPGgwsqv 38 
                 ++aPGgw + 
  CCE28045.1 194 CCAPGGWVES 203
                 9******975 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.5e-06    0.0039      21      64 ..      97     140 ..      94     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.5e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G G+ ++ +a++ p+a+v  +d +
  CCE28045.1  97 QLFLAPLEKNKIHRVLDVGTGSGIWAIDFADQFPHASVIGTDLS 140
                 689999****9999**********************99988865 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-05     0.013      43      91 ..     104     153 ..      80     179 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
  Methyltransf_16  43 nelsklsvlELGsGtGlvGlavaellpeakviltDleelle.llkkniel 91 
                      ++ +  +vl++G G+G+  + +a + p+a+vi tDl+  ++  +  n+  
       CCE28045.1 104 EKNKIHRVLDVGTGSGIWAIDFADQFPHASVIGTDLSPCQPrWVPPNVRF 153
                      5667789*****************************98665245566655 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.7e-05     0.019      17      95 ..      54     140 ..      41     145 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
                     HHHHHS--....HHHHHTSSHHHHHHHHHHHHTT..HHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGis....lfeaikrdeeerakfnkglqes..sslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +++++G++     f+ ++  ++ +++  +   ++   ++  ++ l       +++++++DvG G+G  a   + ++P+ +vi  Dl+
      CCE28045.1  54 YRRIHGRTyhsdKFTTNYIFPNDDQQLESVELSHhaLTILLDDQLFLAPleKNKIHRVLDVGTGSGIWAIDFADQFPHASVIGTDLS 140
                     6666666655567777776666666655544433014555566555544116789**************************999985 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     3e-05     0.033       5      33 ..     111     139 ..     107     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28045.1 111 VLDVGTGSGIWAIDFADQFPHASVIGTDL 139
                     89************************876 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.8e-05     0.076      24      58 ..     106     140 ..      97     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.8e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 ++ +rvL++++G+G  A+ fA ++p++  + +d  
  CCE28045.1 106 NKIHRVLDVGTGSGIWAIDFADQFPHASVIGTDLS 140
                 45569*********************999999876 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00017      0.19      69     103 ..     103     136 ..      65     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 le +k  rvL+vG+GsG+ +  +a  + +   v++
  CCE28045.1 103 LEKNKIHRVLDVGTGSGIWAIDFADQFPHAS-VIG 136
                 5567789***********9999988877665.665 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.23   2.5e+02     176     193 ..      60      76 ..      35      98 .. 0.71
   2 ?    8.3   0.0    0.0011       1.2      61     101 ..     106     147 ..      73     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.23
                 HCTTCCCHHHHHHTSTTS CS
        CMAS 176 aerglklkfidkeiFPgG 193
                  + + + kf++++iFP+ 
  CCE28045.1  60 RTYHSD-KFTTNYIFPND 76 
                 333333.9********85 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0011
                 -TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHH CS
        CMAS  61 kpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqakla 101
                 ++ +++Ld+G+G G  ++  ++++  ++v+g  lS  q +++
  CCE28045.1 106 NKIHRVLDVGTGSGIWAIDFADQFpHASVIGTDLSPCQPRWV 147
                 55579******************96799*******9998876 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026      0.29      19      73 ..      78     132 ..      65     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
                 S---S--SHHHHHHHCHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHHHH-TTS CS
        GidB  19 inLtsikepeellerhlldslsvlellkekrdkviDvGsGaGlPGipLaiarpel 73 
                   L s++  +  l+  l d l +++l k+k ++v+DvG+G G+ +i  a  +p+ 
  CCE28045.1  78 QQLESVELSHHALTILLDDQLFLAPLEKNKIHRVLDVGTGSGIWAIDFADQFPHA 132
                 556666666666666777889999999999889*********9988777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2509.29
//
Query:       CCE28046.1  [L=340]
Description: uncharacterized protein CPUR_01520 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-19   70.5   0.0    2.1e-19   70.0   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    1.7e-12   47.8   0.0    4.6e-12   46.5   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    1.6e-10   41.5   0.0    3.7e-10   40.3   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    4.1e-07   30.7   0.0    4.2e-06   27.4   0.0    2.5  2  Methyltransf_12  Methyltransferase domain
    3.4e-06   26.9   0.0    0.00012   21.9   0.0    2.3  1  Methyltransf_31  Methyltransferase domain
    0.00019   20.9   0.0     0.0032   16.8   0.0    2.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00028   21.0   0.0      0.012   15.7   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
     0.0006   19.6   0.0    0.00091   19.0   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
    0.00088   18.9   0.0     0.0018   17.9   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0084   15.9   0.0      0.014   15.1   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
     0.0088   15.5   0.0      0.015   14.8   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
  ------ inclusion threshold ------
      0.016   14.6   0.0      0.026   13.9   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.046   13.0   0.0      0.086   12.1   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   1.5e-22   2.1e-19      24     125 ..     106     217 ..      66     258 .. 0.77

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 1.5e-22
  Methyltransf_23  24 g..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkpg 112
                      +  rvLdiG+GtGi++ ++++++   sv+g Dlsp + ++++ + ++ ++d +   e++ ++++fd+I+ r+  + ++d+p l++ ++++++pg
       CCE28046.1 106 KihRVLDIGTGTGIWAIEFADQFPntSVIGTDLSPCQPQWIPpNVRFEIDDAT--LEWTWNDNHFDFIHIRYIVGGIQDWPGLFKEAYRCCAPG 197
                      2459******************87779*************9666666666666..5777899******************************** PP

  Methyltransf_23 113 Gylllseplasl.......k 125
                      G+++  e++ +        +
       CCE28046.1 198 GWVESVEIDPEFcsddgttE 217
                      ******98766544444442 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   3.4e-15   4.6e-12       1      97 []     110     198 ..     110     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 3.4e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+GtG +++++a+++++ +v+g+D+s+ + + +        +nv+f+  da  ++  +d++fD++++++ +     +d++ ++ke++r++
       CCE28046.1 110 VLDIGTGTGIWAIEFADQFPNTSVIGTDLSPCQPQWIP-------PNVRFEIDDAtLEWTWNDNHFDFIHIRYIVGG--IQDWPGLFKEAYRCC 194
                      9******************99**********9987653.......5779***9*97789************866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28046.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   2.7e-13   3.7e-10       1      94 [.     111     200 ..     111     201 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 2.7e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+G+GtG+ a ++a+++  ++v+g+Dls+ + ++          +v+f   da+ +   +dn fD++ ++  +  ++d+  ++ke++R++ pg
       CCE28046.1 111 LDIGTGTGIWAIEFADQFpnTSVIGTDLSPCQPQWIPP-------NVRFEIDDATlEWTWNDNHFDFIHIRYIVGGIQDWPGLFKEAYRCCAPG 197
                      8**************9999*************988832.......35666666664469*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28046.1 198 GWV 200
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.4   3.3e+03      28      63 ..      46      81 ..      41      94 .. 0.78
   2 !   27.4   0.0     3e-09   4.2e-06       1      99 []     111     200 ..     111     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.4
  Methyltransf_12 28 ispsaiedakeklakrennnnnnvelealdlldldg 63
                     is+s +e ++++ + ++ ++++ + +  +d+ +l++
       CCE28046.1 46 ISSSILEYRRNHGRTYHSDKFATNYFLPNDDQQLES 81
                     678888888888899999999988888888776654 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 3e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L+iG+GtG  + ++++++p+++++g+D+sp +         ++++  n ++e+++  l+ +   ++fD +++   +  ++d+  ++++++++++
       CCE28046.1 111 LDIGTGTGIWAIEFADQFPNTSVIGTDLSPCQP--------QWIP-PNVRFEIDDATLEWTWNDNHFDFIHIRYIVGGIQDWPGLFKEAYRCCA 195
                      8******************************99........5554.33444444444444444489**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28046.1 196 PGGWV 200
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   8.5e-08   0.00012       6     113 ..     109     206 ..     106     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 8.5e-08
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkileeie 98 
                      rvlD+G+GtG  ++e+a   +p+  v+G D s+   +            nv+Fe+ d++      ++d+ fD+i+ + ++  + d +  ++e+ 
       CCE28046.1 109 RVLDIGTGTGIWAIEFA-DQFPNTSVIGTDLSPCQPQWIPP--------NVRFEIDDATLeWT--WNDNHFDFIHIRYIVGGIQDWPGLFKEAY 191
                      79***************.6689*********9965444333........9********99444..***************************** PP

  Methyltransf_31  99 rvlkpggilliedpr 113
                      r   pgg + + +++
       CCE28046.1 192 RCCAPGGWVESVEID 206
                      ******988777777 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.4e-06    0.0032      49     154 ..     108     205 ..      98     211 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.4e-06
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE.--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflq.anaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                      ++vlD+ +Gtg +a++++d+  +   v++ D+++   +     +      n++f     + e   +d+ fD++ + + +  + D +  +keayr
       CCE28046.1 108 HRVLDIGTGTGIWAIEFADQFPN-TSVIGTDLSPCQPQW----IP----PNVRFEIdDATLEWTWNDNHFDFIHIRYIVGGIQDWPGLFKEAYR 192
                      57999999999999999999865.578999999854332....22....3566644045568899***************************** PP

                      HEEEEEEEEEEEE CS
  Ubie_methyltran 142 vlkpGGrlvvlef 154
                         pGG +  +e+
       CCE28046.1 193 CCAPGGWVESVEI 205
                      *******999986 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.6e-06     0.012      21      72 ..     106     159 ..      79     171 .. 0.86
   2 ?    3.0   0.0     0.071        98      29      38 ..     193     202 ..     191     229 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.6e-06
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCC CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditd 72 
                 + ++v+D+g ++G w+   + ++ + + v++ Dl p++p    p+v++   d t 
  CCE28046.1 106 KIHRVLDIGTGTGIWAIEFADQFPN-TSVIGTDLSPCQPQwipPNVRFEIDDATL 159
                 4589***********9999999875.***********998889999998777775 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.071
                 T-TTSHHHHH CS
        FtsJ  29 gaaPGgwsqv 38 
                 ++aPGgw + 
  CCE28046.1 193 CCAPGGWVES 202
                 9******975 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   6.6e-07   0.00091      30      90 ..      87     151 ..      79     177 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.6e-07
  Methyltransf_16  30 kylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDleelle.llkknie 90 
                      +yl+    ++    + ++++  +vl++G GtG+  + +a + p+++vi tDl+  ++  +  n+ 
       CCE28046.1  87 HYLTILFGDQlflAPLEKYKIHRVLDIGTGTGIWAIEFADQFPNTSVIGTDLSPCQPqWIPPNVR 151
                      5555544333665566889999******************************9865414555655 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.3e-06    0.0018      19      64 ..      94     139 ..      86     145 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  19 GsklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 G +l+l  l+k + ++vlD+G+G+G+ ++++a++ p+++v  +d +
  CCE28046.1  94 GDQLFLAPLEKYKIHRVLDIGTGTGIWAIEFADQFPNTSVIGTDLS 139
                 8899********9999*********************999988865 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     1e-05     0.014      26      59 ..     107     140 ..      97     153 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1e-05
      DUF938  26 tervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                  +rvL+i++GtG  A+ fA ++pn   + +d  +
  CCE28046.1 107 IHRVLDIGTGTGIWAIEFADQFPNTSVIGTDLSP 140
                 469**********************999999765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05     0.015       5      33 ..     110     138 ..     106     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl+iG+G G + ++ A ++P+++++G ++
      CCE28046.1 110 VLDIGTGTGIWAIEFADQFPNTSVIGTDL 138
                     89************************876 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.9e-05     0.026     162     195 ..     107     141 ..      95     165 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                  ++vlD+GtG+Gi ai  a ++   +v+++D+ + 
  CCE28046.1 107 IHRVLDIGTGTGIWAIEfADQFPNTSVIGTDLSPC 141
                 468*************74779999*******9875 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.2e-05     0.086      56      95 ..     100     139 ..      43     143 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.2e-05
                     HSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  56 eafdleglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +  +  ++++++D+G GtG  a + + ++P+ +vi  Dl+
      CCE28046.1 100 APLEKYKIHRVLDIGTGTGIWAIEFADQFPNTSVIGTDLS 139
                     3334457899************************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2556.70
//
Query:       CCE28047.1  [L=341]
Description: uncharacterized protein CPUR_01521 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-18   66.1   0.0    5.1e-18   65.4   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    2.2e-11   44.3   0.0    7.7e-11   42.6   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    4.2e-09   36.9   0.0    8.9e-09   35.9   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    4.3e-06   27.4   0.0    6.7e-05   23.6   0.0    2.8  2  Methyltransf_12  Methyltransferase domain
    9.3e-06   25.5   0.0    0.00026   20.8   0.0    2.4  1  Methyltransf_31  Methyltransferase domain
    0.00023   21.3   0.8      0.032   14.3   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
    0.00032   20.5   0.0    0.00081   19.2   0.0    1.6  2  Methyltransf_16  Lysine methyltransferase
    0.00038   19.9   0.0      0.003   16.9   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00057   19.5   0.0     0.0014   18.2   0.0    1.6  1  MTS              Methyltransferase small domain
     0.0054   16.1   0.0       0.02   14.2   0.0    1.8  2  Methyltransf_2   O-methyltransferase domain
     0.0083   15.5   0.0      0.013   14.9   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0091   15.8   0.0      0.016   15.0   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
  ------ inclusion threshold ------
      0.041   13.3   0.0      0.073   12.5   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
       0.22   11.3   0.0       0.37   10.5   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0     4e-21   5.1e-18      15     132 ..      96     215 ..      82     254 .. 0.73

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 4e-21
  Methyltransf_23  15 rllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrq 104
                      +l+p  +++  rvLd+G+GtGi++ ++++++   sv+g Dlsp + ++++ + ++ ++d +   e++ +++ fd+ + r+ l+ ++d++ l++q
       CCE28047.1  96 FLAPLeKDKLHRVLDVGTGTGIWAIEFADQFPnaSVIGTDLSPCQPQWVPpNVRFEIDDAA--LEWTWNDNFFDFTHIRYILGGIQDWTGLFKQ 187
                      45553256677*******************87779*************8554444444444..46777999*********************** PP

  Methyltransf_23 105 iatllkpgGylllseplaslkedrllld 132
                      ++++++pgG++   e +++  +d    d
       CCE28047.1 188 AYRCCAPGGWVQSVELDVEFRSDDGTTD 215
                      ***********99999888755554444 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   6.1e-14   7.7e-11       1      97 []     108     196 ..     108     196 .. 0.91

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 6.1e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+GtG +++++a+++++a+v+g+D+s+ + + +        +nv+f+  da  ++  +d+ fD+ ++++ l  ++  d+  ++k+++r++
       CCE28047.1 108 VLDVGTGTGIWAIEFADQFPNASVIGTDLSPCQPQWVP-------PNVRFEIDDAaLEWTWNDNFFDFTHIRYILGGIQ--DWTGLFKQAYRCC 192
                      9******************99**********9987653.......5779999999789*************87777665..9************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28047.1 193 APGG 196
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   6.9e-12   8.9e-09       1      94 [.     109     198 ..     109     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 6.9e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+GtG+ a ++a+++  a+v+g+Dls+ + +++  +       v+f   da  +   +dn fD+  ++  l  ++d+  ++k+++R++ pg
       CCE28047.1 109 LDVGTGTGIWAIEFADQFpnASVIGTDLSPCQPQWVPPN-------VRFEIDDAAlEWTWNDNFFDFTHIRYILGGIQDWTGLFKQAYRCCAPG 195
                      8**************9999**************999444.......4454444443579*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28047.1 196 GWV 198
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.2   2.8e+03      23      35 ..      29      41 ..      17      86 .. 0.56
   2 !   23.6   0.0   5.2e-08   6.7e-05       1      99 []     109     198 ..     109     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.2
  Methyltransf_12 23 ytgvDispsaied 35
                      +++D+s++ i  
       CCE28047.1 29 NVYSDFSEDEIST 41
                     5666666666622 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 5.2e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+GtG  + ++++++p+++++g+D+sp + +      ++++++ + ++++++         + fD  ++   l  ++d+  ++++++++++
       CCE28047.1 109 LDVGTGTGIWAIEFADQFPNASVIGTDLSPCQPQWVPPNVRFEIDDAALEWTWND---------NFFDFTHIRYILGGIQDWTGLFKQAYRCCA 193
                      8*******************************95555555555544444444443.........46**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28047.1 194 PGGWV 198
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     2e-07   0.00026       2     112 ..     103     203 ..     102     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2e-07
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkil 94 
                      dk  rvlD+G+GtG  ++e+a   +p+a v+G D s+   +            nv+Fe+ d+       ++d+ fD+ + + +l  + d    +
       CCE28047.1 103 DKLHRVLDVGTGTGIWAIEFA-DQFPNASVIGTDLSPCQPQWVPP--------NVRFEIDDAALeWT--WNDNFFDFTHIRYILGGIQDWTGLF 185
                      67789****************.669**********9954443333........78888888777333..8888888888888888888888888 PP

  Methyltransf_31  95 eeiervlkpggilliedp 112
                      +++ r   pgg + + + 
       CCE28047.1 186 KQAYRCCAPGGWVQSVEL 203
                      888888888876665555 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.5e-05     0.032      21      66 ..     104     151 ..      89     180 .. 0.82
   2 ?    4.8   0.3     0.021        28      29      39 ..     191     201 ..     175     209 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEE CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvtti 66 
                 + ++v+D+g ++G w+   + ++ + + v++ Dl p++p    p+v++ 
  CCE28047.1 104 KLHRVLDVGTGTGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNVRFE 151
                 5689***********9999999875.9**********998888888875 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.021
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw q +
  CCE28047.1 191 CCAPGGWVQSV 201
                 9*******965 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   6.4e-07   0.00081      39     125 ..      94     175 ..      78     177 .. 0.72
   2 ?   -2.7   0.0       3.3   4.2e+03     107     132 ..     313     337 ..     309     339 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 6.4e-07
  Methyltransf_16  39 e...lganelsklsvlELGsGtGlvGlavaellpeakviltDleell.ellkknielnknalkskvkvevLdWgeeleedllekeevDlil 125
                      +    + ++ +  +vl++G GtG+  + +a + p+a+vi tDl+  + + +  n+         ++   +L+W    ++++++ +++ +il
       CCE28047.1  94 QlflAPLEKDKLHRVLDVGTGTGIWAIEFADQFPNASVIGTDLSPCQpQWVPPNVRF-------EIDDAALEWT--WNDNFFDFTHIRYIL 175
                      35554556777889*****************************99661567788877.......5666677773..345666666666666 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.3
  Methyltransf_16 107 WgeeleedllekeevDlilaaDcvYl 132
                      W   + ++ +++ +v   ++aD+vY 
       CCE28047.1 313 WLASM-RKAIHNPRVHSYVIADVVYG 337
                      55555.33344444555566888885 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.3e-06     0.003      49     154 ..     106     203 ..      96     255 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.3e-06
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEE.EE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinief.lqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                      ++vlDv +Gtg +a++++d+   +  v++ D+++   +     +      n++f +   a e   +d+ fD+  + + l  + D +  +k+ayr
       CCE28047.1 106 HRVLDVGTGTGIWAIEFADQFP-NASVIGTDLSPCQPQW----VP----PNVRFeIDDAALEWTWNDNFFDFTHIRYILGGIQDWTGLFKQAYR 190
                      579****************986.5689999*99864333....22....355553456788999****************************** PP

                      HEEEEEEEEEEEE CS
  Ubie_methyltran 142 vlkpGGrlvvlef 154
                         pGG +  +e+
       CCE28047.1 191 CCAPGGWVQSVEL 203
                      ********99986 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.1e-06    0.0014      21      64 ..      94     137 ..      91     158 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.1e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G+G+ ++++a++ p+a+v  +d +
  CCE28047.1  94 QLFLAPLEKDKLHRVLDVGTGTGIWAIEFADQFPNASVIGTDLS 137
                 689999****999***********************99988865 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.6e-05      0.02      17      95 ..      51     137 ..      41     145 .. 0.69
   2 ?   -1.1   0.0      0.76   9.7e+02     148     177 ..     184     213 ..     178     249 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
                     HHHHHS--....HHHHHTSSHHHHHHHH..HHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGis....lfeaikrdeeerakfn..kglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +++ +G++     f+a++  ++ +++    ++ ++  ++  ++ l        +l++++DvG GtG  a + + ++P+ +vi  Dl+
      CCE28047.1  51 YRRLHGRTyhsdKFTANYFIPNDDQQLEslNLCHHYLTILFDDQLFLAPleKDKLHRVLDVGTGTGIWAIEFADQFPNASVIGTDLS 137
                     55555555444466666655555544441134445556666665555541156899*************************999985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.76
                     HHHHHHHH--TT-EEEEEE----TTS---H CS
  Methyltransf_2 148 lLkrvkkalpagGkvivveavlgadpsgel 177
                     l k+ ++ + +gG v  ve  ++ + ++ +
      CCE28047.1 184 LFKQAYRCCAPGGWVQSVELDVEFRSDDGT 213
                     789999999999999999987765554433 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-05     0.013     162     195 ..     105     139 ..      91     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-05
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                  ++vlDvGtG+Gi ai  a ++  ++v+++D+ + 
  CCE28047.1 105 LHRVLDVGTGTGIWAIEfADQFPNASVIGTDLSPC 139
                 369*************7477999********9885 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.2e-05     0.016      25      59 ..     104     138 ..      95     156 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
      DUF938  25 ttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 + +rvL++++GtG  A+ fA ++pn+  + +d  +
  CCE28047.1 104 KLHRVLDVGTGTGIWAIEFADQFPNASVIGTDLSP 138
                 4569**********************999999765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.7e-05     0.073       5      33 ..     108     136 ..     104     140 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.7e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G G + ++ A ++P+ +++G ++
      CCE28047.1 108 VLDVGTGTGIWAIEFADQFPNASVIGTDL 136
                     89************************876 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00029      0.37      69     103 ..     100     133 ..      91     139 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00029
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 le +k  rvL+vG+G+G+ +  +a  + +   v++
  CCE28047.1 100 LEKDKLHRVLDVGTGTGIWAIEFADQFPNAS-VIG 133
                 5567889************999988776555.655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2678.46
//
Query:       CCE28048.1  [L=341]
Description: uncharacterized protein CPUR_01522 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-19   68.8   0.0    7.2e-19   68.2   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    4.2e-12   46.6   0.0    1.1e-11   45.2   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    8.5e-10   39.2   0.0    1.9e-09   38.0   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    7.1e-08   33.1   0.0    4.5e-07   30.5   0.0    2.2  1  Methyltransf_12  Methyltransferase domain
      4e-06   26.7   0.0    0.00013   21.8   0.0    2.3  1  Methyltransf_31  Methyltransferase domain
    0.00055   20.1   0.0      0.029   14.5   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
    0.00099   18.5   0.0      0.012   14.9   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0011   18.6   0.0     0.0021   17.6   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0012   18.2   0.0     0.0077   15.5   0.0    2.0  1  Methyltransf_2   O-methyltransferase domain
     0.0013   18.5   0.0     0.0021   17.8   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
     0.0072   15.8   0.0      0.011   15.1   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0081   15.9   0.0      0.015   15.1   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
  ------ inclusion threshold ------
       0.04   13.4   0.0      0.074   12.5   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
       0.17   11.6   0.0       0.28   10.9   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   5.6e-22   7.2e-19       9     122 ..      93     208 ..      85     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 5.6e-22
  Methyltransf_23   9 lsdklerllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.eaaepqgkfdlIvlrevlehvpdp 98 
                      l d +++l+p  +++  rvLd+G+GtGi++ ++++++   sv+g Dlsp + +++  +++ +++  d+  e++ ++++fd+I+ r  l+ ++d+
       CCE28048.1  93 LFDDRLFLAPLeKEKIHRVLDVGTGTGIWAIEFADQFPnaSVIGTDLSPCQPQWI--PPNVRFEIDDAGlEWTWNADYFDFIHIRLILGGIEDW 184
                      55778888885234444*******************87779************99..44444444433336667999***************** PP

  Methyltransf_23  99 pellrqiatllkpgGylllsepla 122
                      ++ll+ ++++++pgG+++  e  +
       CCE28048.1 185 TALLKEAYRCCAPGGWVESVEGEV 208
                      *****************9988444 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   8.8e-15   1.1e-11       1      97 []     111     199 ..     111     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 8.8e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+GtG +++++a+++++a+v+g+D+s+ + + +        +nv+f+  da  ++  +++ fD+++++  l     ed+ ++lke++r++
       CCE28048.1 111 VLDVGTGTGIWAIEFADQFPNASVIGTDLSPCQPQWIP-------PNVRFEIDDAgLEWTWNADYFDFIHIRLILGG--IEDWTALLKEAYRCC 195
                      9******************99**********9987653.......5779*99999999*************733555..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28048.1 196 APGG 199
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   1.5e-12   1.9e-09       1      94 [.     112     201 ..     112     202 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 1.5e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+GtG+ a ++a+++  a+v+g+Dls+ + ++   +       v+f   da  +   + ++fD++ ++  l  +ed+ ++lke++R++ pg
       CCE28048.1 112 LDVGTGTGIWAIEFADQFpnASVIGTDLSPCQPQWIPPN-------VRFEIDDAGlEWTWNADYFDFIHIRLILGGIEDWTALLKEAYRCCAPG 198
                      8**************9999*************9888333.......55555555534689999******************************* PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28048.1 199 GWV 201
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   3.5e-10   4.5e-07       1      99 []     112     201 ..     112     201 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 3.5e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirevldnirk 91 
                      L++G+GtG  + ++++++p+++++g+D+sp +         ++++  n ++e+++  l+        ++fD +++   l  ++d+ ++l+++++
       CCE28048.1 112 LDVGTGTGIWAIEFADQFPNASVIGTDLSPCQP--------QWIP-PNVRFEIDDAGLEW---TwnaDYFDFIHIRLILGGIEDWTALLKEAYR 193
                      8*****************************999........6665.33344444444333...23559************************** PP

  Methyltransf_12  92 lLkpgGrl 99 
                      +++pgG++
       CCE28048.1 194 CCAPGGWV 201
                      ******85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     1e-07   0.00013       5     107 ..     109     201 ..     105     244 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1e-07
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkileei 97 
                       rvlD+G+GtG  ++e+a   +p+a v+G D s+   +            nv+Fe+ d+       ++ + fD+i+ + +l  + d  + l+e+
       CCE28048.1 109 HRVLDVGTGTGIWAIEFA-DQFPNASVIGTDLSPCQPQWIPP--------NVRFEIDDAGLeWT--WNADYFDFIHIRLILGGIEDWTALLKEA 191
                      58****************.669**********9965443333........99999999998444..9999999999999999999999999999 PP

  Methyltransf_31  98 ervlkpggil 107
                       r   pgg +
       CCE28048.1 192 YRCCAPGGWV 201
                      9999999966 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.3e-05     0.029      21      65 ..     107     153 ..      78     167 .. 0.85
   2 ?    3.3   0.0     0.059        76      29      39 ..     194     204 ..     192     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.3e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEE CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvtt 65 
                 + ++v+D+g ++G w+   + ++ + + v++ Dl p++p    p+v++
  CCE28048.1 107 KIHRVLDVGTGTGIWAIEFADQFPN-ASVIGTDLSPCQPQwipPNVRF 153
                 6699***********9999999875.9**********98877888887 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.059
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28048.1 194 CCAPGGWVESV 204
                 9******9865 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.6e-06     0.012      49     153 ..     109     205 ..      97     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.6e-06
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEE.EE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinief.lqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                      ++vlDv +Gtg +a++++d+   +  v++ D+++   +     +      n++f +   + e   + d fD++ +   l  + D +  Lkeayr
       CCE28048.1 109 HRVLDVGTGTGIWAIEFADQFP-NASVIGTDLSPCQPQW----IP----PNVRFeIDDAGLEWTWNADYFDFIHIRLILGGIEDWTALLKEAYR 193
                      589***************9986.5679999999864332....22....255553456788999999*************************** PP

                      HEEEEEEEEEEE CS
  Ubie_methyltran 142 vlkpGGrlvvle 153
                         pGG +  +e
       CCE28048.1 194 CCAPGGWVESVE 205
                      ******998877 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.6e-06    0.0021      21      63 ..      97     139 ..      94     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.6e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +l+l  l+ke+ ++vlD+G+G+G+ ++++a++ p+a+v  +d 
  CCE28048.1  97 RLFLAPLEKEKIHRVLDVGTGTGIWAIEFADQFPNASVIGTDL 139
                 689999***99999**********************9998886 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     6e-06    0.0077      55     171 ..     100     210 ..      48     239 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6e-06
                     HHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTTS-----SEEEEESSGGGS-HHHHHHHH CS
  Methyltransf_2  55 leafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehlsageeervefvgGdffkdslPeaDaillkrvlhDwsdekcvklL 149
                     l+  + e++++++DvG GtG  a + + ++P+ +vi  Dl+      ++ + ++ + +++  g +    +    D i +  +l   +d   + lL
      CCE28048.1 100 LAPLEKEKIHRVLDVGTGTGIWAIEFADQFPNASVIGTDLSPCQ---PQWIPPNVRFEIDDAGLEWT-WNADYFDFIHIRLILGGIEDW--TALL 188
                     344456789******************************97542...33322222222222222222.222222555556665554443..4567 PP

                     HHHHHH--TT-EEEEEE----T CS
  Methyltransf_2 150 krvkkalpagGkvivveavlga 171
                     k+ ++ + +gG v  ve  ++ 
      CCE28048.1 189 KEAYRCCAPGGWVESVEGEVDF 210
                     7777777777766666665554 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.7e-06    0.0021      40      89 ..     101     151 ..      78     179 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.7e-06
  Methyltransf_16  40 lganelsklsvlELGsGtGlvGlavaellpeakviltDleelle.llkkni 89 
                       + ++ +  +vl++G GtG+  + +a + p+a+vi tDl+  ++  +  n+
       CCE28048.1 101 APLEKEKIHRVLDVGTGTGIWAIEFADQFPNASVIGTDLSPCQPqWIPPNV 151
                      4556778889*****************************986541455555 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.8e-06     0.011     161     195 ..     107     142 ..      96     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.8e-06
        PrmA 161 egeevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                 + ++vlDvGtG+Gi ai  a ++  ++v+++D+ + 
  CCE28048.1 107 KIHRVLDVGTGTGIWAIEfADQFPNASVIGTDLSPC 142
                 3469*************7477999********9875 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-05     0.015      25      59 ..     107     141 ..      99     156 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
      DUF938  25 ttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 + +rvL++++GtG  A+ fA ++pn+  + +d  +
  CCE28048.1 107 KIHRVLDVGTGTGIWAIEFADQFPNASVIGTDLSP 141
                 4469***********************99999765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.7e-05     0.074       5      33 ..     111     139 ..     107     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.7e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G G + ++ A ++P+ +++G ++
      CCE28048.1 111 VLDVGTGTGIWAIEFADQFPNASVIGTDL 139
                     89************************876 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00022      0.28      69     103 ..     103     136 ..      59     142 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 le +k  rvL+vG+G+G+ +  +a  + +   v++
  CCE28048.1 103 LEKEKIHRVLDVGTGTGIWAIEFADQFPNAS-VIG 136
                 4556789************999988776555.655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2464.13
//
Query:       CCE28049.1  [L=339]
Description: uncharacterized protein CPUR_01523 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-13   48.5   0.0    1.3e-12   47.9   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    5.1e-07   30.2   0.0      4e-06   27.4   0.0    2.2  2  Methyltransf_11  Methyltransferase domain
    2.7e-06   28.0   0.0    3.5e-05   24.4   0.0    2.5  2  Methyltransf_25  Methyltransferase domain
     0.0061   17.3   0.0       0.03   15.1   0.0    2.1  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   2.8e-16   1.3e-12      15     125 ..      99     207 ..      79     253 .. 0.77

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 2.8e-16
  Methyltransf_23  15 rllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrq 104
                      +l+p  +++  rvLd+    Gi++ ++ +++   sv+g Dlsp + ++++ + ++ ++d +    ++ ++++fd+I++r+  + +pd++ l++ 
       CCE28049.1  99 FLAPLdKEKTHRVLDV----GIWAIEFGDQFPnaSVIGTDLSPCQPQWVPpNVRFEIDDAT--LRWTWNDNYFDFIHMRYIVGGIPDWTGLFKE 186
                      4555434566688887....69*****99987779*************8555555555555..45556999*********************** PP

  Methyltransf_23 105 iatllkpgGylllseplaslk 125
                      ++++++pgG+++  e++++  
       CCE28049.1 187 AYRCCAPGGWVESFEYDVEFR 207
                      ************999988763 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0     9e-10     4e-06      13      94 ..     120     197 ..     112     198 .. 0.81
   2 ?   -0.1   0.0      0.33   1.5e+03      33      62 ..     221     252 ..     213     281 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 9e-10
                      HHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11  13 alakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      ++ +++  a+v+g+Dls+ + +++     ++  +v+f   da+ +   +dn+fD++ ++  +  ++d+  ++ke++R++ pgG++
       CCE28049.1 120 EFGDQFpnASVIGTDLSPCQPQWV-----PP--NVRFEIDDATlRWTWNDNYFDFIHMRYIVGGIPDWTGLFKEAYRCCAPGGWV 197
                      555566678899999999999887.....22..37777777774469************************************85 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.33
                      HHHHHCCHHT-..EEEETTEECCCTSS-TT-E CS
  Methyltransf_11  33 lakekaseegl..kvefvvadaeklpfednsf 62 
                        k+ ++e+g   kv f+ +d+++  f d+ f
       CCE28049.1 221 SFKDLYREAGKilKVPFLIEDIQQQAFDDAGF 252
                      55566666666678999999999999999654 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   7.7e-09   3.5e-05       9      97 .]     115     195 ..     111     195 .. 0.88
   2 ?    0.2   0.0      0.27   1.2e+03      36      65 ..     221     252 ..     214     282 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 7.7e-09
                      SHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25   9 GrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      G +++++ +++++a+v+g+D+s+ + + +        +nv+f+  da  ++  +d+ fD++++++ +  +  +d+  ++ke++r++ pgG
       CCE28049.1 115 GIWAIEFGDQFPNASVIGTDLSPCQPQWVP-------PNVRFEIDDAtLRWTWNDNYFDFIHMRYIVGGI--PDWTGLFKEAYRCCAPGG 195
                      8999*******99**********9987653.......5789*****967799***********8665555..69***************9 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.27
                      HHHHHHHHTTT..TEEEEESBCCGBSSSTTTE CS
  Methyltransf_25  36 aareraeeegl..nvefvqgdaedlpfedgsf 65 
                        +  ++e+g   +v f+  d+++  f+d+ f
       CCE28049.1 221 SFKDLYREAGKilKVPFLIEDIQQQAFDDAGF 252
                      55666666555679999999999999988766 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.6e-06      0.03      16      99 .]     123     197 ..     113     197 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.6e-06
  Methyltransf_12  16 eklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirevldnirklLkpgGrl 99 
                      +++p+++++g+D+sp + +      ++++++ + ++                ++fD +++   +  ++d+  ++++++++++pgG++
       CCE28049.1 123 DQFPNASVIGTDLSPCQPQWVPPNVRFEIDDATLRW------------TwndNYFDFIHMRYIVGGIPDWTGLFKEAYRCCAPGGWV 197
                      555666666666666666333333333333222222............13446********************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2507.67
//
Query:       CCE28050.1  [L=338]
Description: uncharacterized protein CPUR_01524 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-20   71.8   0.0    8.6e-20   71.2   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.9e-11   44.5   0.0    8.2e-11   42.5   0.0    2.2  2  Methyltransf_25  Methyltransferase domain
    1.5e-09   38.4   0.0    5.3e-09   36.6   0.0    1.9  2  Methyltransf_11  Methyltransferase domain
    6.4e-07   30.1   0.0    2.5e-06   28.1   0.0    2.0  1  Methyltransf_12  Methyltransferase domain
      2e-06   27.7   0.0    7.2e-05   22.6   0.0    2.2  1  Methyltransf_31  Methyltransferase domain
    0.00045   19.8   0.0    0.00092   18.8   0.0    1.4  1  MTS              Methyltransferase small domain
    0.00058   19.2   0.0     0.0022   17.3   0.0    1.8  1  Methyltransf_2   O-methyltransferase domain
     0.0021   17.5   0.0     0.0037   16.7   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0035   16.7   0.0       0.53    9.6   0.0    2.1  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0037   17.0   0.0     0.0058   16.4   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
     0.0038   17.4   0.0       0.16   12.0   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.072   12.5   0.0       0.12   11.8   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
      0.081   12.7   0.0       0.14   11.9   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
       0.14   11.5   0.0       0.25   10.6   0.0    1.4  1  CMAS             Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   6.8e-23   8.6e-20      10     160 ..      91     253 ..      81     258 .. 0.75

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 6.8e-23
  Methyltransf_23  10 sdklerllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdp 98 
                       d +++l+p  ++++   vLd+G+G+Gi++ +++++    sv+g Dlsp + ++++ + ++ ++d +   +++ ++++fd+I+ r+ l+ ++d+
       CCE28050.1  91 FDDRLFLAPL-DKDKihQVLDVGTGSGIWAIEFADRYPnaSVIGTDLSPCQPQWIPpNLRFEIDDAT--LDWTWEANRFDFIHIRYILGGIQDW 181
                      5677788875.3443469***************7774445**************9777777777766..68888******************** PP

  Methyltransf_23  99 pellrqiatllkpgGylllseplasl.......kedrllldw.lylvpagrhi..sffsarslkelleeaGl 160
                      + ll+ ++++++pgG+++  e + +        + +  l++w  + ++a++ +   ff  ++  +++ ++++
       CCE28050.1 182 AGLLKEAYKCCAPGGWVESVELDIEFrsddrttELEPVLDSWgDLFREASKILnrPFFVQDQQQQAFDDSDF 253
                      *********************887774444443233334447334455544446677777777777777777 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   6.4e-14   8.2e-11       1      97 []     108     196 ..     108     196 .. 0.91
   2 ?   -2.7   0.0       7.7   9.8e+03      47      65 ..     235     253 ..     224     280 .. 0.61

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 6.4e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+r+++a+v+g+D+s+ + + +         n++f+  da  d+  e+++fD++++++ l  ++  d++ +lke+++++
       CCE28050.1 108 VLDVGTGSGIWAIEFADRYPNASVIGTDLSPCQPQWIPP-------NLRFEIDDAtLDWTWEANRFDFIHIRYILGGIQ--DWAGLLKEAYKCC 192
                      9******************99**********99887655.......569999999788*************87777665..9************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28050.1 193 APGG 196
                      ***9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7.7
                      TEEEEESBCCGBSSSTTTE CS
  Methyltransf_25  47 nvefvqgdaedlpfedgsf 65 
                      n  f ++d ++  f+d+ f
       CCE28050.1 235 NRPFFVQDQQQQAFDDSDF 253
                      5557777777777766533 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       9.7   1.2e+04      51      67 ..      18      35 ..       5      39 .. 0.78
   2 !   36.6   0.0   4.1e-12   5.3e-09       1      94 [.     109     198 ..     109     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 9.7
                     ECCCTSS-T.T-EEEEEE CS
  Methyltransf_11 51 daeklpfed.nsfDlvvs 67
                      ae++p+ d n  D v+s
       CCE28050.1 18 AAEDVPVGDkNDLDSVYS 35
                     578999999678888887 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 4.1e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+r+  a+v+g+Dls+ + ++          +++f   da+ +   e n fD++ ++  l  ++d++ +lke+++++ pg
       CCE28050.1 109 LDVGTGSGIWAIEFADRYpnASVIGTDLSPCQPQWIPP-------NLRFEIDDATlDWTWEANRFDFIHIRYILGGIQDWAGLLKEAYKCCAPG 195
                      8**************9999*************988832.......36666777775678*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28050.1 196 GWV 198
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0     2e-09   2.5e-06       1      99 []     109     198 ..     109     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + +++++ p+++++g+D+sp +         ++++  n ++e+++  l+ + + + fD +++   l  ++d++ +l++++k+++
       CCE28050.1 109 LDVGTGSGIWAIEFADRYPNASVIGTDLSPCQP--------QWIP-PNLRFEIDDATLDWTWEANRFDFIHIRYILGGIQDWAGLLKEAYKCCA 193
                      8******************************99........4443.33444444444444444468**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28050.1 194 PGGWV 198
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   5.7e-08   7.2e-05       5     112 ..     106     203 ..     102     244 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 5.7e-08
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkileei 97 
                       +vlD+G+G+G  ++e+a++ +p+a v+G D s+   +            n++Fe+ d++      +e ++fD+i+ + +l  + d +  l+e+
       CCE28050.1 106 HQVLDVGTGSGIWAIEFADR-YPNASVIGTDLSPCQPQWIPP--------NLRFEIDDATLdWT--WEANRFDFIHIRYILGGIQDWAGLLKEA 188
                      69****************55.9***********965444433........99*******99777..999************************* PP

  Methyltransf_31  98 ervlkpggilliedp 112
                       +   pgg + + + 
       CCE28050.1 189 YKCCAPGGWVESVEL 203
                      *****9997765555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.2e-07   0.00092      21      64 ..      94     137 ..      91     140 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.2e-07
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a+++p+a+v  +d +
  CCE28050.1  94 RLFLAPLDKDKIHQVLDVGTGSGIWAIEFADRYPNASVIGTDLS 137
                 689999****999************************9988865 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.7e-06    0.0022      17     163 ..      51     199 ..      41     220 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.7e-06
                     HHHHHS--....HHHHHTSSHHHHHHHHHHHHTTH..HHHHHH..HHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHH CS
  Methyltransf_2  17 fkkafGis....lfeaikrdeeerakfnkglqess..slvakk..vleafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAke 103
                     f++++G++     f  ++  ++ +++  +   ++   ++  ++   l+  d  ++++++DvG G+G  a + +  yP+ +vi  Dl+      ++
      CCE28050.1  51 FRRIHGRTyhsdKFATNYFLPNDNQQIESVELSHHylTILFDDrlFLAPLDKDKIHQVLDVGTGSGIWAIEFADRYPNASVIGTDLSPC---QPQ 142
                     555555554444666666666666666655444441133334311456677889*******************************9754...345 PP

                     HS-----TTEEEEES-TTTS-----SEEEEESSGGGS-HHHHHHHHHHHHHH--TT-EEE CS
  Methyltransf_2 104 hlsageeervefvgGdffkdslPeaDaillkrvlhDwsdekcvklLkrvkkalpagGkvi 163
                      + ++++ +++    d    +  + D i +  +l   +d   + lLk+ +k + +gG v 
      CCE28050.1 143 WIPPNLRFEIDDATLDWT-WEANRFDFIHIRYILGGIQDW--AGLLKEAYKCCAPGGWVE 199
                     555555555555555555.444555666666666544442..346666666666666655 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.9e-06    0.0037     162     194 ..     105     138 ..      94     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.9e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a +   ++v+++D+ +
  CCE28050.1 105 IHQVLDVGTGSGIWAIEfADRYPNASVIGTDLSP 138
                 369*************74678999999***9987 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.011        14      49      81 ..     106     137 ..      90     143 .. 0.80
   2 !    9.6   0.0   0.00041      0.53     112     154 ..     161     203 ..     146     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++vlDv +G+g +a++++d    +  v++ D++
       CCE28050.1 106 HQVLDVGTGSGIWAIEFADRYP-NASVIGTDLS 137
                      589**************99864.4456666665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00041
                      TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 112 feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       e + fD++ + + l  + D    Lkeay+   pGG +  +e+
       CCE28050.1 161 WEANRFDFIHIRYILGGIQDWAGLLKEAYKCCAPGGWVESVEL 203
                      57799********************************998885 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.5e-06    0.0058      29      83 ..      84     141 ..      77     175 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.5e-06
  Methyltransf_16  29 vkylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDleelle 83 
                       +yl+    +     + ++ +  +vl++G G+G+  + +a  +p+a+vi tDl+  ++
       CCE28050.1  84 HHYLTILFDDRlflAPLDKDKIHQVLDVGTGSGIWAIEFADRYPNASVIGTDLSPCQP 141
                      556655443336665567778899*****************************98654 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00013      0.16      21      70 ..     104     155 ..      73     168 .. 0.83
   2 ?    3.0   0.0     0.074        95      29      38 ..     191     200 ..     188     218 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 + ++v+D+g + G w+   + r   ++ v++ Dl p++p    p++++   d 
  CCE28050.1 104 KIHQVLDVGTGSGIWAIEFADRYP-NASVIGTDLSPCQPQwipPNLRFEIDDA 155
                 5688******************76.5***********9877777777665555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.074
                 T-TTSHHHHH CS
        FtsJ  29 gaaPGgwsqv 38 
                 ++aPGgw + 
  CCE28050.1 191 CCAPGGWVES 200
                 9******975 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.7e-05      0.12       4      33 ..     107     136 ..     104     140 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.7e-05
                     EEEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkknPdknflGiEi 33 
                      vl++G+G+G + ++ A + P+ +++G ++
      CCE28050.1 107 QVLDVGTGSGIWAIEFADRYPNASVIGTDL 136
                     589************************876 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.14      25      59 ..     104     138 ..      96     152 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
      DUF938  25 ttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 + ++vL++++G+G  A+ fA + pn+  + +d  +
  CCE28050.1 104 KIHQVLDVGTGSGIWAIEFADRYPNASVIGTDLSP 138
                 4469**********************999999765 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00019      0.25      61     100 ..     103     143 ..      93     156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
                 -TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHH CS
        CMAS  61 kpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqakl 100
                 ++ +++Ld+G+G G  +++ ++ry +++v+g  lS  q ++
  CCE28050.1 103 DKIHQVLDVGTGSGIWAIEFADRYpNASVIGTDLSPCQPQW 143
                 55578*******************889*******9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2452.46
//
Query:       CCE28051.1  [L=342]
Description: uncharacterized protein CPUR_01525 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-18   67.6   0.0    1.6e-18   67.1   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    4.1e-12   46.6   0.0    1.4e-11   45.0   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    1.7e-09   38.2   0.0    3.7e-09   37.1   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    2.2e-06   28.3   0.0    1.4e-05   25.7   0.0    2.2  1  Methyltransf_12  Methyltransferase domain
      1e-05   25.4   0.0    0.00031   20.6   0.0    2.3  1  Methyltransf_31  Methyltransferase domain
    0.00025   20.8   0.0    0.00041   20.1   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
    0.00026   20.6   0.0    0.00058   19.5   0.0    1.5  1  MTS              Methyltransferase small domain
    0.00029   21.0   0.0      0.023   14.8   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
     0.0017   17.8   0.0      0.004   16.6   0.0    1.6  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0081   15.9   0.0      0.022   14.5   0.0    1.7  2  DUF938           Protein of unknown function (DUF938)
  ------ inclusion threshold ------
      0.017   14.4   0.0       0.06   12.6   0.0    1.9  2  CMAS             Mycolic acid cyclopropane synthetase
      0.048   13.0   0.0       0.54    9.6   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.052   12.8   0.0        0.1   11.9   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain
        0.1   12.4   0.0       0.16   11.7   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.12   11.8   0.0       0.23   10.9   0.0    1.4  1  Methyltransf_4   Putative methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   1.3e-21   1.6e-18      11     124 ..      95     210 ..      78     256 .. 0.83

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 1.3e-21
  Methyltransf_23  11 dklerllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppe 100
                      d+ ++l+p  +++  rvLd+G+G Gi++ ++++++   sv+g Dlsp + ++++ + ++ ++d +   e++ + ++fd+I+ r+  + ++d+++
       CCE28051.1  95 DNQLFLAPLeKEKTHRVLDVGTGCGIWAIEFADRFPnaSVIGTDLSPCQPQWVPpNVRFEIDDAT--LEWTWNTNHFDFIHIRHIVGGIQDWTA 186
                      555666665357777****************99987779*************9666666666666..5777799******************** PP

  Methyltransf_23 101 llrqiatllkpgGylllseplasl 124
                      l++ ++++++pgG+++  e++ + 
       CCE28051.1 187 LFQEAYRCCAPGGWVESAEYDIEF 210
                      *****************9997665 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   1.1e-14   1.4e-11       1      97 []     111     199 ..     111     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 1.1e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G G +++++a+r+++a+v+g+D+s+ + + +        +nv+f+  da  ++  + ++fD++++++ +     +d+ ++++e++r++
       CCE28051.1 111 VLDVGTGCGIWAIEFADRFPNASVIGTDLSPCQPQWVP-------PNVRFEIDDAtLEWTWNTNHFDFIHIRHIVG--GIQDWTALFQEAYRCC 195
                      9******************99**********9987653.......5789*9999977899***********63344..4569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28051.1 196 APGG 199
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   3.1e-12   3.7e-09       1      94 [.     112     201 ..     112     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 3.1e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G G+ a ++a+r+  a+v+g+Dls+ + +++         +v+f   da+ +   + n fD++ +++ +  ++d+ ++++e++R++ pg
       CCE28051.1 112 LDVGTGCGIWAIEFADRFpnASVIGTDLSPCQPQWVPP-------NVRFEIDDATlEWTWNTNHFDFIHIRHIVGGIQDWTALFQEAYRCCAPG 198
                      8**************9999*************988832.......35666666664468*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28051.1 199 GWV 201
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.2e-08   1.4e-05       1      99 []     112     201 ..     112     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.2e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G G  + ++++++p+++++g+D+sp +         ++ +  n ++e+++  l+ +   ++fD +++ + +  ++d+ +++++++++++
       CCE28051.1 112 LDVGTGCGIWAIEFADRFPNASVIGTDLSPCQP--------QWVP-PNVRFEIDDATLEWTWNTNHFDFIHIRHIVGGIQDWTALFQEAYRCCA 196
                      8******************************99........4443.33344444444433333479**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28051.1 197 PGGWV 201
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.6e-07   0.00031       2     113 ..     106     207 ..     105     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.6e-07
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkil 94 
                      +k+ rvlD+G+G G  ++e+a++ +p+a v+G D s+   +            nv+Fe+ d++      ++ + fD+i+ + ++  + d  + +
       CCE28051.1 106 EKTHRVLDVGTGCGIWAIEFADR-FPNASVIGTDLSPCQPQWVPP--------NVRFEIDDATLeWT--WNTNHFDFIHIRHIVGGIQDWTALF 188
                      67889****************66.89**********965444444........9********99444..999********************** PP

  Methyltransf_31  95 eeiervlkpggilliedpr 113
                      +e+ r   pgg + +++++
       CCE28051.1 189 QEAYRCCAPGGWVESAEYD 207
                      **********988777776 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.5e-07   0.00041      31      90 ..      89     152 ..      81     175 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.5e-07
  Methyltransf_16  31 ylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDleelle.llkknie 90 
                      yl+    ++    + ++ ++ +vl++G G+G+  + +a   p+a+vi tDl+  ++  +  n+ 
       CCE28051.1  89 YLAILFDNQlflAPLEKEKTHRVLDVGTGCGIWAIEFADRFPNASVIGTDLSPCQPqWVPPNVR 152
                      555544444555566788999******************************9865414555555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.8e-07   0.00058      21      64 ..      97     140 ..      92     144 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.8e-07
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+ke++++vlD+G+G G+ ++++a++ p+a+v  +d +
  CCE28051.1  97 QLFLAPLEKEKTHRVLDVGTGCGIWAIEFADRFPNASVIGTDLS 140
                 799999******************************99988865 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.9e-05     0.023      21      73 ..     107     161 ..      70     173 .. 0.86
   2 ?    3.9   0.0     0.043        51      29      39 ..     194     204 ..     191     238 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCCS CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditdp 73 
                 ++++v+D+g + G w+   + r+ + + v++ Dl p++p    p+v++   d t +
  CCE28051.1 107 KTHRVLDVGTGCGIWAIEFADRFPN-ASVIGTDLSPCQPQwvpPNVRFEIDDATLE 161
                 6799******************976.***********9988899999988777765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.043
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28051.1 194 CCAPGGWVESA 204
                 *******9977 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3   1.6e+03      10      43 ..      26      58 ..      22      97 .. 0.63
   2 !   16.6   0.0   3.3e-06     0.004     160     195 ..     106     142 ..      81     201 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
        PrmA 10 kkeaeeavsniLeelgakgvaiedsklleeedif 43
                + e++++v  +L e  +++++i++s  le ++i+
  CCE28051.1 26 SAENQDDVDSVLSEDQSSTTSITSSI-LEYRKIH 58
                56677777777777777777776554.5555554 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 3.3e-06
        PrmA 160 kegeevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                 +++++vlDvGtG Gi ai  a ++  ++v+++D+ + 
  CCE28051.1 106 EKTHRVLDVGTGCGIWAIEfADRFPNASVIGTDLSPC 142
                 55679*************74789**********9986 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         3   3.6e+03       7      34 ..      26      56 ..      23      85 .. 0.63
   2 !   14.5   0.0   1.9e-05     0.022      24      59 ..     106     141 ..      97     158 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3
      DUF938  7 aernrepilevLksylaktte...rvLEias 34
                ++ n++ + +vL +   +tt+    +LE   
  CCE28051.1 26 SAENQDDVDSVLSEDQSSTTSitsSILEYRK 56
                5678888888888777777665556776554 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.9e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++t+rvL++++G G  A+ fA ++pn+  + +d  +
  CCE28051.1 106 EKTHRVLDVGTGCGIWAIEFADRFPNASVIGTDLSP 141
                 56779**********************999999765 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     5e-05      0.06      55     102 ..     100     148 ..      91     205 .. 0.84
   2 ?   -1.3   0.0      0.91   1.1e+03     141     202 ..     215     278 ..     206     306 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5e-05
                 HTTTT--TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHH CS
        CMAS  55 leklelkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklak 102
                 l  le ++ +++Ld+G+G G  +++ ++r+ +++v+g  lS  q +++ 
  CCE28051.1 100 LAPLEKEKTHRVLDVGTGCGIWAIEFADRFpNASVIGTDLSPCQPQWVP 148
                 5667778889*******************9889********99988765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.91
                 SGGGHHHHHHHHHHHS-TT-EEEEEEEEE--HHHHH..CTTCCCHHHHHHTSTTS---BHHHHH CS
        CMAS 141 gkenydtffkklkkllkedGllllhtitslhkkela..erglklkfidkeiFPgGelpsieeie 202
                 g+ +++  f+ +k+l +e G +l     +++ +++a  e+g   k ++++  P G  p+  +++
  CCE28051.1 215 GTTELEPIFASFKDLYREAGKILKVPFLIKEIQQQAfdEAGFVEKRVARYKVPIGPWPKDPKLA 278
                 5566677788889999999988877655555544440044444466667777777766655555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00045      0.54      47     153 ..     107     205 ..      83     211 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00045
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE.--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHH CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflq.anaeeLpfeddsfDvvtvsfGlrnvtDklkaLkea 139
                      + ++vlDv +G g +a++++d    +  v++ D+++   +            n++f     + e   + + fD++ + + +  + D +  ++ea
       CCE28051.1 107 KTHRVLDVGTGCGIWAIEFADRFP-NASVIGTDLSPCQPQWVP--------PNVRFEIdDATLEWTWNTNHFDFIHIRHIVGGIQDWTALFQEA 191
                      566899999999999999999875.567889998875433322........355554303445777888999*****9999999**99999*** PP

                      HHHEEEEEEEEEEE CS
  Ubie_methyltran 140 yrvlkpGGrlvvle 153
                      yr   pGG +   e
       CCE28051.1 192 YRCCAPGGWVESAE 205
                      *******9987665 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.5e-05       0.1      17      95 ..      54     140 ..      38     145 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.5e-05
                     HHHHHS--....HHHHHTSSHHHHHH..HHHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGis....lfeaikrdeeerak..fnkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     ++k++G++     f+ ++  ++ +++   +++ ++   +  ++ l       e+ ++++DvG G G  a + +  +P+ +vi  Dl+
      CCE28051.1  54 YRKIHGRTyhsdKFTTNYFMPNDDQQieTMELCHHYLAILFDNQLFLAPleKEKTHRVLDVGTGCGIWAIEFADRFPNASVIGTDLS 140
                     666666665555565555544444431145566666666666655554411567889************************999985 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013      0.16      68     102 ..     102     135 ..      51     142 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
                 HTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEE CS
        PCMT  68 llelkkgarvLevGsGsGyltavlarlvgekgrvv 102
                  le +k  rvL+vG+G+G+ +  +a  + +   v+
  CCE28051.1 102 PLEKEKTHRVLDVGTGCGIWAIEFADRFPNAS-VI 135
                 45667899***********9999887765554.55 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00019      0.23       4      33 ..     110     139 ..     107     143 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
                     EEEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkknPdknflGiEi 33 
                      vl++G+G G + ++ A ++P+ +++G ++
      CCE28051.1 110 RVLDVGTGCGIWAIEFADRFPNASVIGTDL 139
                     689************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2466.61
//
Query:       CCE28052.1  [L=341]
Description: uncharacterized protein CPUR_01526 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-18   66.5   0.0    3.8e-18   65.9   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    6.4e-11   42.8   0.0    1.9e-10   41.3   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    1.3e-09   38.5   0.0    3.7e-09   37.1   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    1.6e-07   31.9   0.0    1.3e-06   29.1   0.0    2.3  1  Methyltransf_12  Methyltransferase domain
    1.3e-05   25.1   0.0      0.014   15.2   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
    0.00094   18.6   0.0      0.014   14.8   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0011   18.5   0.0     0.0056   16.2   0.0    2.1  2  MTS              Methyltransferase small domain
      0.005   16.3   0.0     0.0076   15.7   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0084   16.2   0.1       0.46   10.6   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.021   14.3   0.6       0.04   13.4   0.0    1.7  2  Methyltransf_4   Putative methyltransferase
      0.065   12.5   0.0       0.11   11.8   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
        0.1   12.3   0.0       0.16   11.7   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
       0.15   11.8   0.0       0.27   11.0   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   2.8e-21   3.8e-18      15     132 ..      99     218 ..      77     257 .. 0.70

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 2.8e-21
  Methyltransf_23  15 rllpk.lragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.....eaaepqgkfdlIvlrevlehvpdp 98 
                      +l+p  ++     r Ld+G+G+Gi++ ++++++   sv+g D+sp + ++++     ++++f e+     e++ ++++fd+I+ r+ l+ ++d+
       CCE28052.1  99 FLAPLeKD--RihRALDVGTGSGIWAIEFADQFPnaSVIGTDISPCQPQWVP-----PNVCF-EIddatlEWTWNANHFDFIHIRYILGGIQDW 184
                      33343123..2459******************87779************984.....44444.22122236666******************** PP

  Methyltransf_23  99 pellrqiatllkpgGylllseplaslkedrllld 132
                      ++l + ++++++pgG+l+  e+    ++d  +l+
       CCE28052.1 185 TALYKEAYRCCAPGGWLESIEYEPAFHSDDGALE 218
                      ********************98777655554444 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   1.3e-13   1.9e-10       2      97 .]     112     199 ..     111     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.3e-13
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      Ld+G+G+G +++++a+++++a+v+g+Dis+ + + +        +nv f+  da  ++  ++++fD++++++ l  ++  d+ +++ke++r++ 
       CCE28052.1 112 LDVGTGSGIWAIEFADQFPNASVIGTDISPCQPQWVP-------PNVCFEIDDAtLEWTWNANHFDFIHIRYILGGIQ--DWTALYKEAYRCCA 196
                      9*****************99**********9987654.......577999999977899***********87777665..9************* PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       CCE28052.1 197 PGG 199
                      **9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   2.7e-12   3.7e-09       1      94 [.     112     201 ..     112     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 2.7e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+D+s+ + +++  +       v f   da+ +   + n fD++ ++  l  ++d+ ++ ke++R++ pg
       CCE28052.1 112 LDVGTGSGIWAIEFADQFpnASVIGTDISPCQPQWVPPN-------VCFEIDDATlEWTWNANHFDFIHIRYILGGIQDWTALYKEAYRCCAPG 198
                      8**************9999**************888333.......44444444433589********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G+l
       CCE28052.1 199 GWL 201
                      *97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   9.2e-10   1.3e-06       1      99 []     112     201 ..     112     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 9.2e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+Disp +         ++ +  n ++e+++  l+ +   ++fD +++   l  ++d+ ++ ++++++++
       CCE28052.1 112 LDVGTGSGIWAIEFADQFPNASVIGTDISPCQP--------QWVP-PNVCFEIDDATLEWTWNANHFDFIHIRYILGGIQDWTALYKEAYRCCA 196
                      8*******************************9........4443.44556666555555555579**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG+l
       CCE28052.1 197 PGGWL 201
                      ***97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     1e-05     0.014       6      38 ..     110     141 ..     105     143 .. 0.91
   2 !    7.7   0.0    0.0021       2.9      55     109 ..     150     203 ..     144     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-05
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                      r lD+G+G+G  ++e+a   +p+a v+G Dis+
       CCE28052.1 110 RALDVGTGSGIWAIEFA-DQFPNASVIGTDISP 141
                      679**************.669**********97 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0021
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilli 109
                      nv Fe+ d++      ++ + fD+i+ + +l  + d  + ++e+ r   pgg l +
       CCE28052.1 150 NVCFEIDDATLeWT--WNANHFDFIHIRYILGGIQDWTALYKEAYRCCAPGGWLES 203
                      78899999998444..999********************************98755 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   9.8e-06     0.014      49     154 ..     109     206 ..      97     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.8e-06
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrv 142
                      +++lDv +G+g +a++++d+   +  v++ Di++       + +  +   +i+     + e   + + fD++ + + l  + D +   keayr 
       CCE28052.1 109 HRALDVGTGSGIWAIEFADQFP-NASVIGTDISPCQP----QWVPPNVCFEID---DATLEWTWNANHFDFIHIRYILGGIQDWTALYKEAYRC 194
                      5789999999999999999875.56789999998643....334444444443...45567788899*************************** PP

                      EEEEEEEEEEEE CS
  Ubie_methyltran 143 lkpGGrlvvlef 154
                        pGG l  +e+
       CCE28052.1 195 CAPGGWLESIEY 206
                      *******99997 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   1.6e+03      40      90 ..      15      67 ..       7      71 .. 0.65
   2 !   16.2   0.0   4.1e-06    0.0056      21      64 ..      97     140 ..      94     143 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
                -TTSHHHHHHHHHTTC.E..EEEEESBHHHHHHHHHHHHHTTGCEEEEE-STT CS
         MTS 40 cGaGvlgaalakespeae..vtlvdvdarAlesakenleanklevevvasdvl 90
                +G G+++a+   +  ++e   ++ + +     +a   le  +l++++++sd +
  CCE28052.1 15 AGDGLIAAEDVPADYQNEvdSVISEDKSSTTSIASSILEYRQLHGRTYHSDKF 67
                67888887654444444411455566666667777777788888888888765 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 4.1e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ +++lD+G+G G+ ++++a++ p+a+v  +d++
  CCE28052.1  97 QLFLAPLEKDRIHRALDVGTGSGIWAIEFADQFPNASVIGTDIS 140
                 689999****9999************************999987 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.5e-06    0.0076     163     195 ..     109     142 ..      95     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.5e-06
        PrmA 163 eevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                 ++ lDvGtGSGi ai  a ++  ++v+++Di + 
  CCE28052.1 109 HRALDVGTGSGIWAIEfADQFPNASVIGTDISPC 142
                 589************747799**********985 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00033      0.46      21      72 ..     107     160 ..      75     172 .. 0.84
   2 ?    3.4   0.0     0.053        73      29      39 ..     194     204 ..     192     226 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00033
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCC CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditd 72 
                 + ++++D+g + G w+   + ++ + + v++ D+ p++p    p+v +   d t 
  CCE28052.1 107 RIHRALDVGTGSGIWAIEFADQFPN-ASVIGTDISPCQPQwvpPNVCFEIDDATL 160
                 6689***********9999999875.9**********998888888887777765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.053
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28052.1 194 CCAPGGWLESI 204
                 9******9876 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.9e-05      0.04       5      34 ..     111     140 ..     108     144 .. 0.93
   2 ?   -3.4   0.3       4.1   5.7e+03      83      89 ..     270     276 ..     269     277 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.9e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES- CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEir 34 
                      l++G+G+G + ++ A ++P+ +++G +i+
      CCE28052.1 111 ALDVGTGSGIWAIEFADQFPNASVIGTDIS 140
                     58************************9986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.1
                     ---SGGG CS
  Methyltransf_4  83 PwfKkrh 89 
                     Pw+K r+
      CCE28052.1 270 PWPKDRK 276
                     *****98 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.9e-05      0.11      17      94 ..      54     139 ..      41     143 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.9e-05
                     HHHHHS--....HHHHHTS..SHHHHHHHHHHHHTTHHHHHHHHHHSS-GG..G-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE- CS
  Methyltransf_2  17 fkkafGis....lfeaikr..deeerakfnkglqessslvakkvleafdle..glkslvDvGGGtGalakaivsayPtikvivfDl 94 
                     +++ +G++     f  +++  +++ ++   ++ +++ ++  ++ l    le  ++++ +DvG G+G  a + + ++P+ +vi  D+
      CCE28052.1  54 YRQLHGRTyhsdKFATNYHipNDDQQLESEELCHHVLTILFDDQLFLAPLEkdRIHRALDVGTGSGIWAIEFADQFPNASVIGTDI 139
                     44445554444455554440044444455566777778888877766665422799************************999887 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.16      44      83 ..     105     144 ..      82     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
  Methyltransf_16  44 elsklsvlELGsGtGlvGlavaellpeakviltDleelle 83 
                      + +  ++l++G G+G+  + +a + p+a+vi tD++  ++
       CCE28052.1 105 KDRIHRALDVGTGSGIWAIEFADQFPNASVIGTDISPCQP 144
                      5566789***************************998654 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0002      0.27      25      59 ..     107     141 ..      98     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
      DUF938  25 ttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 + +r L++++G+G  A+ fA ++pn+  + +d  +
  CCE28052.1 107 RIHRALDVGTGSGIWAIEFADQFPNASVIGTDISP 141
                 55689*********************999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2443.08
//
Query:       CCE28053.1  [L=282]
Description: uncharacterized protein CPUR_01527 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-13   48.8   0.0    1.2e-12   48.0   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    9.6e-07   29.4   0.0    2.8e-06   27.9   0.0    1.7  2  Methyltransf_11  Methyltransferase domain
    1.9e-06   28.5   0.0      1e-05   26.1   0.0    2.2  2  Methyltransf_25  Methyltransferase domain
    0.00031   21.4   0.0     0.0016   19.1   0.0    2.2  2  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.023   14.0   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
       0.14   12.0   0.0       0.25   11.1   0.0    1.5  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   3.9e-16   1.2e-12      40     160 ..      65     196 ..      60     200 .. 0.73

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 3.9e-16
  Methyltransf_23  40 lrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkpgGylllseplasl...... 124
                      +++++   sv+g Dlsp + ++a+ + ++ ++d +   e++ ++++fd+I+ r+ l+ ++d+++ll+ ++++++pgG+++  e+ ++       
       CCE28053.1  65 FADQFPnaSVIGTDLSPCQPQWAPpNVRFEIDDAT--LEWTWNANHFDFIHIRYILGGIQDWTALLKEAYRCCAPGGWVESVEYEVDFrsddgt 156
                      555554559*************9666666666666..57778*****************************************99888555555 PP

  Methyltransf_23 125 ....kedrllldwlylvpagrhi..sffsarslkelleeaGl 160
                          +   l+   ++ ++a+r +   ff ++   +++ +aG+
       CCE28053.1 157 teleP--VLASFGELFREAERILncPFFVREIQQQAFDDAGF 196
                      43221..22222345566655445466665555555677777 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   9.5e-10   2.8e-06      14      94 ..      65     141 ..      61     142 .. 0.83
   2 ?   -3.4   0.0       5.4   1.6e+04      79      88 ..     168     177 ..     163     178 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 9.5e-10
                      HHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11  14 lakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      +a+++  a+v+g+Dls+ + ++a  +       v+f   da+ +   + n fD++ ++  l  ++d+ ++lke++R++ pgG++
       CCE28053.1  65 FADQFpnASVIGTDLSPCQPQWAPPN-------VRFEIDDATlEWTWNANHFDFIHIRYILGGIQDWTALLKEAYRCCAPGGWV 141
                      5566667899*********9999333.......5666666663468************************************86 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.4
                      HHHHHHHHHE CS
  Methyltransf_11  79 kalkeiaRvL 88 
                      ++++e+ R+L
       CCE28053.1 168 ELFREAERIL 177
                      6899999998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.4e-09     1e-05      14      97 .]      64     139 ..      61     139 .. 0.88
   2 ?   -1.3   0.0       1.2   3.7e+03      46      65 ..     176     196 ..     162     225 .. 0.65

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.4e-09
                      HHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  14 alakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      ++a+++++a+v+g+D+s+ + + a        +nv+f+  da  ++  ++++fD++++++ l  ++  d+ ++lke++r++ pgG
       CCE28053.1  64 EFADQFPNASVIGTDLSPCQPQWAP-------PNVRFEIDDAtLEWTWNANHFDFIHIRYILGGIQ--DWTALLKEAYRCCAPGG 139
                      68999989**********9988764.......467999999977899***********87777665..9***************9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
                      T.TEEEEESBCCGBSSSTTTE CS
  Methyltransf_25  46 l.nvefvqgdaedlpfedgsf 65 
                      + n+ f + ++++  f+d+ f
       CCE28053.1 176 IlNCPFFVREIQQQAFDDAGF 196
                      248888888888888876643 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.5   7.5e+03      36      71 ..      19      51 ..      11      53 .. 0.64
   2 !   19.1   0.0   5.4e-07    0.0016      15      99 .]      66     141 ..      61     141 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.5
  Methyltransf_12 36 akeklakrennnnnnvelealdlldldggssfDlvv 71
                     ++ + + ++ ++++ + +  +d+ +l+   s D+v+
       CCE28053.1 19 RQLHGRTYHSEKFTANYFIPNDDRQLA---SLDMVL 51
                     555566667777777777777766554...777776 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 5.4e-07
  Methyltransf_12  15 leklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLkpgGrl 99 
                      ++++p+++++g+D+sp + + a    ++++++ + +++++a         ++fD +++   l  ++d+ ++l++++++++pgG++
       CCE28053.1  66 ADQFPNASVIGTDLSPCQPQWAPPNVRFEIDDATLEWTWNA---------NHFDFIHIRYILGGIQDWTALLKEAYRCCAPGGWV 141
                      55667777777777777775555555555544444444443.........58*******************************85 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   7.8e-06     0.023     109     154 ..     101     146 ..      86     153 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.8e-06
                      T-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 109 eLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                      e   + + fD++ + + l  + D +  Lkeayr   pGG +  +e+
       CCE28053.1 101 EWTWNANHFDFIHIRYILGGIQDWTALLKEAYRCCAPGGWVESVEY 146
                      45567799********************************999886 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.3e-05      0.25      55     107 ..      90     141 ..      63     181 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.3e-05
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      nv+Fe+ d++      ++ + fD+i+ + +l  + d  + l+e+ r   pgg +
       CCE28053.1  90 NVRFEIDDATLeWT--WNANHFDFIHIRYILGGIQDWTALLKEAYRCCAPGGWV 141
                      9********99444..999*******************************9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2092.10
//
Query:       CCE28054.1  [L=342]
Description: uncharacterized protein CPUR_01528 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-20   71.9   0.0    7.8e-20   71.4   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      1e-12   48.6   0.0    2.8e-12   47.2   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    3.5e-10   40.4   0.0    6.7e-10   39.5   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    1.2e-08   35.6   0.0    8.7e-08   32.8   0.0    2.2  1  Methyltransf_12  Methyltransferase domain
    7.3e-06   25.8   0.0    0.00022   21.0   0.0    2.2  1  Methyltransf_31  Methyltransferase domain
    0.00012   21.5   0.0     0.0013   18.2   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00033   20.2   0.0    0.00082   19.0   0.0    1.6  1  MTS              Methyltransferase small domain
      0.001   18.4   0.0     0.0055   16.0   0.0    1.9  1  Methyltransf_2   O-methyltransferase domain
     0.0022   18.1   0.1       0.28   11.3   0.0    2.5  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.025   14.4   0.0    1.5  2  DUF938           Protein of unknown function (DUF938)
      0.023   14.1   0.0       0.03   13.7   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.058   13.1   0.0      0.093   12.5   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.071   12.6   0.0       0.13   11.8   0.0    1.3  1  Methyltransf_4   Putative methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   5.6e-23   7.8e-20      15     125 ..      99     217 ..      79     258 .. 0.72

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 5.6e-23
  Methyltransf_23  15 rllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.eaaepqgkfdlIvlrevlehvpdppellrq 104
                      +l+p  +++  rvLd+G+G+G+++ ++++++   svtg Dlsp + +++  +++ +++  d++ +++ ++++fd+I++r+  + ++d++ ll+ 
       CCE28054.1  99 FLAPLeEDKIRRVLDVGTGSGTWAIEFADQFPnaSVTGTDLSPCQPKWV--PPNVHFEIDDASlDWTWEANHFDFIHMRYIVGGIQDWTTLLKE 190
                      44543234445*******************8777**********99997..55555555554446666999*********************** PP

  Methyltransf_23 105 iatllkpgGylllseplasl......k 125
                      ++++++pgG+++  e+ ++        
       CCE28054.1 191 AYRCCAPGGWVESIEYEVDFrsddgtT 217
                      *************99988874444441 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   2.1e-15   2.8e-12       1      97 []     111     199 ..     111     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 2.1e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G++++++a+++++a+vtg+D+s+ + + +        +nv+f+  da  d+  e+++fD++++++ +     +d+ ++lke++r++
       CCE28054.1 111 VLDVGTGSGTWAIEFADQFPNASVTGTDLSPCQPKWV-------PPNVHFEIDDAsLDWTWEANHFDFIHMRYIVGG--IQDWTTLLKEAYRCC 195
                      9******************99**********987754.......35789******889*************866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28054.1 196 APGG 199
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   4.8e-13   6.7e-10       1      94 [.     112     201 ..     112     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 4.8e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G  a ++a+++  a+v+g+Dls+ + k++      ++  v f   da+ +   e n fD++ ++  +  ++d+  +lke++R++ pg
       CCE28054.1 112 LDVGTGSGTWAIEFADQFpnASVTGTDLSPCQPKWVP-----PN--VHFEIDDASlDWTWEANHFDFIHMRYIVGGIQDWTTLLKEAYRCCAPG 198
                      8**************9999**************9983.....32..5565666664578*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28054.1 199 GWV 201
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   6.3e-11   8.7e-08       1      99 []     112     201 ..     112     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 6.3e-11
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G+ + ++++++p++++tg+D+sp +         k+ +  n ++e+++ +l+ + + ++fD +++   +  ++d+  +l++++++++
       CCE28054.1 112 LDVGTGSGTWAIEFADQFPNASVTGTDLSPCQP--------KWVP-PNVHFEIDDASLDWTWEANHFDFIHMRYIVGGIQDWTTLLKEAYRCCA 196
                      8*******************************9........4443.33455555555555555589**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28054.1 197 PGGWV 201
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.6e-07   0.00022       5     106 ..     109     200 ..     105     234 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.6e-07
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkileei 97 
                       rvlD+G+G+G+ ++e+a   +p+a v+G D s+   +            nv+Fe+ d+       +e + fD+i+ + ++  + d    l+e+
       CCE28054.1 109 RRVLDVGTGSGTWAIEFA-DQFPNASVTGTDLSPCQPKWV--------PPNVHFEIDDASLdWT--WEANHFDFIHMRYIVGGIQDWTTLLKEA 191
                      58****************.669**********99543333........3389999999887666..8889999999999999999999999999 PP

  Methyltransf_31  98 ervlkpggi 106
                       r   pgg 
       CCE28054.1 192 YRCCAPGGW 200
                      998888886 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.1e-07    0.0013      49     154 ..     109     206 ..      99     211 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.1e-07
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEE.EE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinief.lqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                      ++vlDv +G+g +a++++d+   +  v++ D+++   k            n++f +   + +   e + fD++ + + +  + D ++ Lkeayr
       CCE28054.1 109 RRVLDVGTGSGTWAIEFADQFP-NASVTGTDLSPCQPKWVPP--------NVHFeIDDASLDWTWEANHFDFIHMRYIVGGIQDWTTLLKEAYR 193
                      5799**************9985.5689999999865444333........44441234456778899*************************** PP

                      HEEEEEEEEEEEE CS
  Ubie_methyltran 142 vlkpGGrlvvlef 154
                         pGG +  +e+
       CCE28054.1 194 CCAPGGWVESIEY 206
                      ********99996 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.9e-07   0.00082      21      64 ..      97     140 ..      94     155 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.9e-07
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l++++ ++vlD+G+G G  ++++a++ p+a+vt +d +
  CCE28054.1  97 QLFLAPLEEDKIRRVLDVGTGSGTWAIEFADQFPNASVTGTDLS 140
                 789999****9999*************************99976 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     4e-06    0.0055      55     174 ..     100     213 ..      46     240 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4e-06
                     HHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTTS-----SEEEEESSGGGS-HHHHHHHH CS
  Methyltransf_2  55 leafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehlsageeervefvgGdffkdslPeaDaillkrvlhDwsdekcvklL 149
                     l+  +  ++++++DvG G+G  a + + ++P+ +v+  Dl+      ++ + ++ + +++    d    +  + D i +  ++   +d   ++lL
      CCE28054.1 100 LAPLEEDKIRRVLDVGTGSGTWAIEFADQFPNASVTGTDLSPC---QPKWVPPNVHFEIDDASLDWT-WEANHFDFIHMRYIVGGIQDW--TTLL 188
                     344445689******************************9864...344444445555555555555.455566788888887665553..4688 PP

                     HHHHHH--TT-EEEEEE----TTS- CS
  Methyltransf_2 150 krvkkalpagGkvivveavlgadps 174
                     k+ ++ + +gG v  +e  ++ + +
      CCE28054.1 189 KEAYRCCAPGGWVESIEYEVDFRSD 213
                     8888888888888777776665544 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0    0.0002      0.28      21      66 ..     107     154 ..      97     169 .. 0.85
   2 ?    3.8   0.0     0.039        54      29      40 ..     194     205 ..     192     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEE CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvtti 66 
                 + ++v+D+g + G w+   + ++ + + v + Dl p++p    p+v++ 
  CCE28054.1 107 KIRRVLDVGTGSGTWAIEFADQFPN-ASVTGTDLSPCQPKwvpPNVHFE 154
                 6789***********9999999875.9**********998888888875 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.039
                 T-TTSHHHHHHC CS
        FtsJ  29 gaaPGgwsqvll 40 
                 ++aPGgw + + 
  CCE28054.1 194 CCAPGGWVESIE 205
                 9******99775 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.8e-05     0.025      25      58 ..     107     140 ..      99     150 .. 0.86
   2 ?   -4.3   0.0       9.3   1.3e+04     141     149 ..     269     277 ..     268     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.8e-05
      DUF938  25 ttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 + +rvL++++G+G  A+ fA ++pn+    +d  
  CCE28054.1 107 KIRRVLDVGTGSGTWAIEFADQFPNASVTGTDLS 140
                 4459*********************999888865 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 9.3
      DUF938 141 GPyaqdGel 149
                 GP+aqdG++
  CCE28054.1 269 GPWAQDGKF 277
                 9******97 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.2e-05      0.03     162     195 ..     108     142 ..      84     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.2e-05
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                  ++vlDvGtGSG  ai  a ++  ++v+++D+ + 
  CCE28054.1 108 IRRVLDVGTGSGTWAIEfADQFPNASVTGTDLSPC 142
                 369*************7477999********9986 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.7e-05     0.093      42      91 ..     103     153 ..      81     179 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.7e-05
  Methyltransf_16  42 anelsklsvlELGsGtGlvGlavaellpeakviltDleelle.llkkniel 91 
                       +e + ++vl++G G+G   + +a + p+a+v+ tDl+  ++  +  n+  
       CCE28054.1 103 LEEDKIRRVLDVGTGSGTWAIEFADQFPNASVTGTDLSPCQPkWVPPNVHF 153
                      56677889*****************************98654155666655 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.1e-05      0.13       5      32 ..     111     138 ..     108     143 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.1e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEE CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiE 32 
                     vl++G+G+G++ ++ A ++P+ ++ G +
      CCE28054.1 111 VLDVGTGSGTWAIEFADQFPNASVTGTD 138
                     79*******************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2454.62
//
Query:       CCE28055.1  [L=95]
Description: uncharacterized protein CPUR_01529 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 746.05
//
Query:       CCE28056.1  [L=322]
Description: uncharacterized protein CPUR_01530 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-22   77.5   0.0    1.5e-21   77.0   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    6.7e-12   46.0   0.0    1.9e-11   44.5   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
      1e-09   38.9   0.0    2.7e-09   37.5   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    1.2e-07   32.4   0.0    9.5e-07   29.5   0.0    2.4  2  Methyltransf_12  Methyltransferase domain
    1.2e-05   25.1   0.0     0.0053   16.6   0.0    2.2  2  Methyltransf_31  Methyltransferase domain
    0.00061   19.3   0.0     0.0014   18.1   0.0    1.5  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00078   18.8   0.0       0.15   11.4   0.0    2.2  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0019   17.6   0.0      0.012   14.9   0.0    2.0  1  Methyltransf_2   O-methyltransferase domain
     0.0029   17.7   0.0        0.2   11.8   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
     0.0049   16.4   0.0      0.011   15.3   0.0    1.5  1  MTS              Methyltransferase small domain
     0.0081   15.9   0.0      0.014   15.2   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.021   14.6   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
       0.02   14.4   0.0      0.038   13.4   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.086   12.6   0.0       0.16   11.7   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.093   12.0   0.0       0.14   11.4   0.0    1.2  1  GidB             rRNA small subunit methyltransferase G
       0.13   11.5   0.0       0.29   10.4   0.0    1.6  1  CMAS             Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   1.3e-24   1.5e-21      11     160 ..      94     255 ..      77     259 .. 0.71

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 1.3e-24
  Methyltransf_23  11 dklerllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppe 100
                      d ++ l+p  +++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   e++ ++++fd+I++r+  + ++d+++
       CCE28056.1  94 DDRLSLAPLeKDKMHRVLDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWVPpNLCFEIDDAT--REWTWNANHFDFIHMRYIVGGIQDWTA 185
                      444455654234445*******************87779*************9754444444444..67778********************** PP

  Methyltransf_23 101 llrqiatllkpgGylllseplaslkedrllld........wlylvpagrhi..sffsarslkelleeaGl 160
                      ll+ ++++++pgG+++  e++++  +d +  +          + ++a +++   ff  +  ke++ eaG+
       CCE28056.1 186 LLKEAYRCCAPGGWVESVEYDVEIRSDDRSTElepilassGDLFREAAKVLnrPFFVQEIQKEAFDEAGF 255
                      *******************999885444433312222221222233333334466665555666666666 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.7e-14   1.9e-11       1      97 []     110     198 ..     110     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 1.7e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da +++  ++++fD++++++ +     +d+ ++lke++r++
       CCE28056.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPP-------NLCFEIDDAtREWTWNANHFDFIHMRYIVGG--IQDWTALLKEAYRCC 194
                      9******************99**********99887655.......5589999996779************866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28056.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   2.4e-12   2.7e-09       1      94 [.     111     200 ..     111     201 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 2.4e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaek.lpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  +       + f   da++    + n fD++ ++  +  ++d+ ++lke++R++ pg
       CCE28056.1 111 LDVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWVPPN-------LCFEIDDATReWTWNANHFDFIHMRYIVGGIQDWTALLKEAYRCCAPG 197
                      8**************9999*************9888332.......5566677775379*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28056.1 198 GWV 200
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   8.4e-10   9.5e-07       1      99 []     111     200 ..     111     200 .. 0.93
   2 ?   -2.3   0.0       6.9   7.8e+03      65      93 ..     273     302 ..     232     304 .. 0.59

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 8.4e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     l +++++ + +++++a+         +fD +++   +  ++d+ ++l++++++++
       CCE28056.1 111 LDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPPNLCFEIDDATREWTWNAN---------HFDFIHMRYIVGGIQDWTALLKEAYRCCA 195
                      8********************************88888888888888888888866.........6**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28056.1 196 PGGWV 200
                      ***85 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.9
  Methyltransf_12  65 ssfDlvvasnvlhhl.kdirevldnirklL 93 
                      +s+   +  +vl    ++ +e+l+ irk++
       CCE28056.1 273 DSYTQMLWQGVLKRPtDEYHEWLATIRKAI 302
                      555556666666666566667777777765 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.7e-06    0.0053       2      38 ..     105     140 ..     104     142 .. 0.90
   2 !    6.5   0.0    0.0061       6.8      55     113 ..     149     206 ..     146     253 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.7e-06
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                      dk  rvlD+G+G+G  ++e+a   +p+a v+G D s+
       CCE28056.1 105 DKMHRVLDVGTGSGIWAIEFA-DQFPNASVIGTDLSP 140
                      56679****************.669*********987 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0061
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      n+ Fe+ d++      ++ + fD+i+ + ++  + d  + l+e+ r   pgg + + +++
       CCE28056.1 149 NLCFEIDDATReWT--WNANHFDFIHMRYIVGGIQDWTALLKEAYRCCAPGGWVESVEYD 206
                      67799999999444..999********************************988766666 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       5.8   6.5e+03      55     258 ..      29      47 ..      16      65 .. 0.56
   2 !   18.1   0.0   1.2e-06    0.0014     160     194 ..     105     140 ..      94     149 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5.8
        PrmA  55 evkvkalfkeeteakeliaqlkeselglekgkvkveeveeedWaeewkkyykPvrigerltivpsweeypeeeeelvieldpGlAFGTGtHpTTklcle 153
                 +++++++++e+++ +  i                                                                                 
  CCE28056.1  29 RSDINSVYSEDKSSTTSI--------------------------------------------------------------------------------- 46 
                 555555555444433322................................................................................. PP

        PrmA 154 aleklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellkeekadvivaNILaevlielaedikklvke 252
                                                                                                                    
  CCE28056.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

        PrmA 253 ggllil 258
                      +
  CCE28056.1  47 -----A 47 
                 .....2 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.2e-06
        PrmA 160 kegeevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  + ++vlDvGtGSGi ai  a ++  ++v+++D+ +
  CCE28056.1 105 DKMHRVLDVGTGSGIWAIEfADQFPNASVIGTDLSP 140
                 35579*************74779999*******987 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0087       9.8      48      81 ..     107     139 ..      95     144 .. 0.80
   2 !   11.4   0.0   0.00014      0.15     111     154 ..     162     205 ..     150     261 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0087
                      TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  48 gakvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                       ++vlDv +G+g +a++++d+  +   v++ D++
       CCE28056.1 107 MHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLS 139
                      4689***************99754.456666665 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00014
                      TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 111 pfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                        + + fD++ + + +  + D +  Lkeayr   pGG +  +e+
       CCE28056.1 162 TWNANHFDFIHMRYIVGGIQDWTALLKEAYRCCAPGGWVESVEY 205
                      566789*********************************99997 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-05     0.012      19      96 ..      55     140 ..      43     224 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-05
                     HHHS--....HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-GG..G-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HH CS
  Methyltransf_2  19 kafGis....lfeaikrdeeerakf..nkglqessslvakkvleafdle..glkslvDvGGGtGalakaivsayPtikvivfDlpe 96 
                     + +G++    +f+ ++  ++ +++    ++ ++  ++  ++ l    le  ++++++DvG G+G  a + + ++P+ +vi  Dl+ 
      CCE28056.1  55 QLHGRTyhsdTFTTNYLFPNDDQQLesVELCHHYLTILFDDRLSLAPLEkdKMHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSP 140
                     444444333367666665555444411456666777888888877776522799**************************999964 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00017       0.2      21      72 ..     106     159 ..      68     172 .. 0.83
   2 ?    3.7   0.0     0.051        57      29      39 ..     193     203 ..     191     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCC CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditd 72 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p++ +   d t+
  CCE28056.1 106 KMHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNLCFEIDDATR 159
                 5689***********9999999875.9**********998777777766666665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.051
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28056.1 193 CCAPGGWVESV 203
                 9******9876 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.7e-06     0.011      24      63 ..      99     138 ..      95     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.7e-06
                 HHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  24 letlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v  +d 
  CCE28056.1  99 LAPLEKDKMHRVLDVGTGSGIWAIEFADQFPNASVIGTDL 138
                 5678999999***********************9998886 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-05     0.014      39      82 ..      96     142 ..      79     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
  Methyltransf_16  39 e...lganelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                           + ++ +  +vl++G G+G+  + +a + p+a+vi tDl+  +
       CCE28056.1  96 RlslAPLEKDKMHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQ 142
                      35555667788899****************************98765 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.9e-05     0.021      24      59 ..     105     140 ..      98     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE28056.1 105 DKMHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSP 140
                 45569**********************999999765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.4e-05     0.038       5      33 ..     110     138 ..     106     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.4e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28056.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDL 138
                     89************************876 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.16      69     103 ..     102     135 ..      92     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 le +k  rvL+vG+GsG+ +  +a  + +   v++
  CCE28056.1 102 LEKDKMHRVLDVGTGSGIWAIEFADQFPNAS-VIG 135
                 5557889************999988776555.665 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013      0.14      18      67 ..      76     125 ..      65     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
                 HS---S--SHHHHHHHCHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHH CS
        GidB  18 kinLtsikepeellerhlldslsvlellkekrdkviDvGsGaGlPGipLa 67 
                    L s++  +  l+  + d ls+++l k+k ++v+DvG+G G+ +i  a
  CCE28056.1  76 DQQLESVELCHHYLTILFDDRLSLAPLEKDKMHRVLDVGTGSGIWAIEFA 125
                 5556666666666677778999999999999989*********9888766 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026      0.29      58     101 ..     102     146 ..      64     174 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
                 TT--TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHH CS
        CMAS  58 lelkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqakla 101
                 le ++ +++Ld+G+G G  +++ ++++ +++v+g  lS  q +++
  CCE28056.1 102 LEKDKMHRVLDVGTGSGIWAIEFADQFpNASVIGTDLSPCQPQWV 146
                 44455679******************9789********9887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2337.27
//
Query:       CCE28057.1  [L=52]
Description: uncharacterized protein CPUR_01531 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-08   33.0   0.1    4.7e-08   32.9   0.1    1.0  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   2.6e-12   4.7e-08     105     137 ..      11      42 ..       2      47 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.6e-12
       DDE_3 105 drlellylPpySPelNpiEivwsklkrellkrr 137
                  +++ l +PpySP+lNpiE++ s lk++++k r
  CCE28057.1  11 LEVTPLKWPPYSPDLNPIENLSSCLKQQIFK-R 42 
                 56788899*********************99.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       166  (0.00925874); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 436.54
//
Query:       CCE28058.1  [L=340]
Description: uncharacterized protein CPUR_01532 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-21   74.4   0.0    1.3e-20   73.9   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    7.1e-12   45.9   0.0    1.9e-11   44.5   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    1.2e-09   38.7   0.0    2.5e-09   37.6   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    3.6e-07   30.8   0.0    4.3e-06   27.4   0.0    2.5  1  Methyltransf_12  Methyltransferase domain
    4.4e-06   26.6   0.0    0.00016   21.5   0.0    2.3  1  Methyltransf_31  Methyltransferase domain
     0.0012   18.5   0.0     0.0023   17.5   0.0    1.5  1  MTS              Methyltransferase small domain
     0.0013   18.1   0.0      0.015   14.7   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0014   18.1   0.0     0.0028   17.1   0.0    1.5  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0018   18.0   0.0     0.0038   17.0   0.0    1.5  1  Methyltransf_16  Lysine methyltransferase
     0.0019   18.4   0.0       0.12   12.5   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
      0.003   16.9   0.0      0.013   14.8   0.0    1.9  1  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.034   13.9   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
      0.021   14.3   0.0      0.041   13.4   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.031   13.6   0.0      0.075   12.4   0.0    1.5  2  GidB             rRNA small subunit methyltransferase G
      0.069   12.9   0.0       0.13   12.0   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.12   11.7   0.0       0.18   11.1   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   1.1e-23   1.3e-20      15     125 ..      98     218 ..      78     294 .. 0.75

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 1.1e-23
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dls+ + ++++ + ++ ++d +   e++ ++++fd+I++r+  + ++d+++ll+
       CCE28058.1  98 FLAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSVIGTDLSSCQPQWVPpNVSFEIDDAT--LEWTWNANHFDFIHMRYIVGGIQDWTALLK 188
                      3444.4444456*******************87779*********99998665555555555..57777************************* PP

  Methyltransf_23 104 qiatllkpgGylllseplasl........k 125
                       ++++++pgG+++  e++++          
       CCE28058.1 189 EAYRCCAPGGWVESVEYDVEFrsddgtteL 218
                      ****************99987555555440 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.7e-14   1.9e-11       1      97 []     110     198 ..     110     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 1.7e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +        +nv+f+  da  ++  ++++fD++++++ +     +d+ ++lke++r++
       CCE28058.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDLSSCQPQWV-------PPNVSFEIDDAtLEWTWNANHFDFIHMRYIVGG--IQDWTALLKEAYRCC 194
                      9******************99*********8887654.......35889*****977899***********866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28058.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   2.2e-12   2.5e-09       1      94 [.     111     200 ..     111     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 2.2e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls  + +++  +       v+f   da+ +   + n fD++ ++  +  ++d+ ++lke++R++ pg
       CCE28058.1 111 LDVGTGSGIWAIEFADQFpnASVIGTDLSSCQPQWVPPN-------VSFEIDDATlEWTWNANHFDFIHMRYIVGGIQDWTALLKEAYRCCAPG 197
                      8**************9999*********99999888333.......5555566663468*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28058.1 198 GWV 200
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   3.9e-09   4.3e-06       1      99 []     111     200 ..     111     200 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 3.9e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+s+ + +      ++++++ + +++++a         ++fD +++   +  ++d+ ++l++++++++
       CCE28058.1 111 LDVGTGSGIWAIEFADQFPNASVIGTDLSSCQPQWVPPNVSFEIDDATLEWTWNA---------NHFDFIHMRYIVGGIQDWTALLKEAYRCCA 195
                      8*****************************9995555555555555555555554.........58**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28058.1 196 PGGWV 200
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.5e-07   0.00016       5     111 ..     108     204 ..     104     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.5e-07
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkileei 97 
                       rvlD+G+G+G  ++e+a   +p+a v+G D s      ++    +    nv+Fe+ d++      ++ + fD+i+ + ++  + d  + l+e+
       CCE28058.1 108 HRVLDVGTGSGIWAIEFA-DQFPNASVIGTDLSS-----CQP---QWVPPNVSFEIDDATLeWT--WNANHFDFIHMRYIVGGIQDWTALLKEA 190
                      68****************.669*********875.....333...233449********99444..999************************* PP

  Methyltransf_31  98 ervlkpggillied 111
                       r   pgg + + +
       CCE28058.1 191 YRCCAPGGWVESVE 204
                      *****999775555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.1e-06    0.0023      21      64 ..      96     139 ..      91     170 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.1e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v  +d +
  CCE28058.1  96 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 139
                 689999****9999***********************9999876 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.3e-05     0.015      49     154 ..     108     205 ..      98     211 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.3e-05
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE.--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflq.anaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                      ++vlDv +G+g +a++++d+   +  v++ D+++       + +      n+ f     + e   + + fD++ + + +  + D +  Lkeayr
       CCE28058.1 108 HRVLDVGTGSGIWAIEFADQFP-NASVIGTDLSSCQ----PQWVPP----NVSFEIdDATLEWTWNANHFDFIHMRYIVGGIQDWTALLKEAYR 192
                      5789999999999999999875.4578888987643....233333....444433044567788899************************** PP

                      HEEEEEEEEEEEE CS
  Ubie_methyltran 142 vlkpGGrlvvlef 154
                         pGG +  +e+
       CCE28058.1 193 CCAPGGWVESVEY 205
                      *******999886 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.6     4e+03     200     215 ..      20      35 ..      17      61 .. 0.56
   2 !   17.1   0.0   2.5e-06    0.0028     162     194 ..     107     140 ..      89     200 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.6
        PrmA 200 akeNaelNkveaklev 215
                 a+eN+++N+ ++  ++
  CCE28058.1  20 AEENIAVNDQDDIDSI 35 
                 5555555555443333 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2.5e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a ++  ++v+++D+ +
  CCE28058.1 107 IHRVLDVGTGSGIWAIEfADQFPNASVIGTDLSS 140
                 369*************74779999*******976 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.4e-06    0.0038      30      91 ..      87     152 ..      80     177 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.4e-06
  Methyltransf_16  30 kylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDleelle.llkkniel 91 
                      ++l++ l ++    + ++ +  +vl++G G+G+  + +a + p+a+vi tDl+  ++  +  n+  
       CCE28058.1  87 HFLTMLLDDQlflAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSSCQPqWVPPNVSF 152
                      44555444447766667888899*****************************99664155666655 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00011      0.12      21      73 ..     106     160 ..      78     172 .. 0.84
   2 ?    3.4   0.0     0.063        71      29      39 ..     193     203 ..     191     226 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCCS CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditdp 73 
                 + ++v+D+g + G w+   + ++ + + v++ Dl +++p    p+v++   d t +
  CCE28058.1 106 KIHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLSSCQPQwvpPNVSFEIDDATLE 160
                 6799***********9999999875.9**********9988899999988887765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.063
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28058.1 193 CCAPGGWVESV 203
                 9******9876 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05     0.013      25      97 ..      65     141 ..      43     225 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
                     HHHHHTSSHHHHHHHHHHHHTT..HHHHHHHH..HHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHH CS
  Methyltransf_2  25 lfeaikrdeeerakfnkglqes..sslvakkv..leafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeV 97 
                      f+a++  ++ +++  +  + +   ++  ++   l+  +  ++++++DvG G+G  a + + ++P+ +vi  Dl++ 
      CCE28058.1  65 KFTANYFIPNDDQQLESEESCHhfLTMLLDDQlfLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSSC 141
                     56666555555544443333330033333444013444456899*****************************9864 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.1e-05     0.034      24      58 ..     105     139 ..      97     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.1e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d  
  CCE28058.1 105 DKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 139
                 44569**********************99999865 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.6e-05     0.041       5      33 ..     110     138 ..     106     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.6e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28058.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDL 138
                     89************************876 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.7e-05     0.075      16      68 ..      74     126 ..      64     135 .. 0.84
   2 ?   -2.8   0.0         3   3.3e+03      87     122 ..     282     317 ..     280     333 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.7e-05
                 HHHS---S--SHHHHHHHCHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHHH CS
        GidB  16 NkkinLtsikepeellerhlldslsvlellkekrdkviDvGsGaGlPGipLai 68 
                 N    L s +  + +l+  l d l +++l k+k ++v+DvG+G G+ +i  a 
  CCE28058.1  74 NDDQQLESEESCHHFLTMLLDDQLFLAPLEKDKIHRVLDVGTGSGIWAIEFAD 126
                 777888999999999999999999999999999989*********98887665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3
                 HHHHHHHHCT-SSEEEEES-CCCTTTTT-EEEEEEC CS
        GidB  87 FLeevkeelklenveivearaeekqeeekydvvtsR 122
                 FL+e+ e+     ++++ + +++ + e+++ ++t+R
  CCE28058.1 282 FLQEALENDLQGYTQMLWQSVQKPEDEYHVWLATIR 317
                 666554443333377777777776666666666666 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011      0.13      69     103 ..     102     135 ..      56     141 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 le +k  rvL+vG+GsG+ +  +a  + +   v++
  CCE28058.1 102 LEKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VIG 135
                 4557789***********9999988776554.555 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00016      0.18      60     101 ..     104     146 ..      70     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
                 --TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHH CS
        CMAS  60 lkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqakla 101
                  ++ +++Ld+G+G G  +++ ++++ +++v+g  lS+ q +++
  CCE28058.1 104 KDKIHRVLDVGTGSGIWAIEFADQFpNASVIGTDLSSCQPQWV 146
                 555679******************9789*********998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 2826.02
//
Query:       CCE28059.1  [L=148]
Description: uncharacterized protein CPUR_01533 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.088   13.0   0.0       0.13   12.5   0.0    1.2  1  Peptidase_S78  Caudovirus prohead serine protease


Domain annotation for each model (and alignments):
>> Peptidase_S78  Caudovirus prohead serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     7e-06      0.13       5      44 ..      78     122 ..      75     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7e-06
  Peptidase_S78   5 vrsseegee...tisGYasvfnevsellg..gfkeviapgafeet 44 
                     rs++e++e   +++ Y   f + s++l+   f e+i p+af+++
     CCE28059.1  78 FRSDDETTElepVLTSYEELFRKASKVLNrpLFVEEIQPQAFANA 122
                    5666744444589***************9999**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1149.14
//
Query:       CCE28060.1  [L=229]
Description: uncharacterized protein CPUR_01534 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1716.22
//
Query:       CCE28061.1  [L=340]
Description: uncharacterized protein CPUR_01535 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-19   68.8   0.0    6.9e-19   68.3   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    2.8e-11   44.0   0.0    8.2e-11   42.5   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    7.1e-10   39.4   0.0    2.9e-09   37.5   0.0    2.0  2  Methyltransf_11  Methyltransferase domain
    1.2e-06   29.1   0.0    1.1e-05   26.0   0.0    2.5  2  Methyltransf_12  Methyltransferase domain
    0.00045   20.0   0.0     0.0085   15.9   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
     0.0014   18.0   0.0     0.0026   17.2   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0015   18.1   0.0     0.0034   17.0   0.0    1.5  1  MTS              Methyltransferase small domain
     0.0044   17.2   0.0       0.23   11.6   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
     0.0071   15.7   0.0        1.2    8.4   0.0    2.1  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0077   15.6   0.0      0.017   14.4   0.0    1.5  2  Methyltransf_2   O-methyltransferase domain
      0.009   15.8   0.0      0.018   14.8   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
      0.016   15.0   0.0      0.031   14.1   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
       0.02   14.3   0.0      0.046   13.2   0.0    1.6  2  Methyltransf_4   Putative methyltransferase
        0.1   12.4   0.0       0.17   11.6   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   5.4e-22   6.9e-19      15     123 ..      98     208 ..      76     263 .. 0.77

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 5.4e-22
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   e++ ++++fd+I+lr+  + ++d+++l++
       CCE28061.1  98 FLAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWVPpNLCFEIDDAT--LEWTWNANHFDFIHLRFIVGGIEDWTALFK 188
                      3444.4444456*******************87779************98542222223322..46667************************* PP

  Methyltransf_23 104 qiatllkpgGylllseplas 123
                       ++++++pgG+++  e+   
       CCE28061.1 189 EAYRCCAPGGWVESVEYEPQ 208
                      **************997544 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   6.4e-14   8.2e-11       1      97 []     110     198 ..     110     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 6.4e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  ++++fD++++++ +     ed+ +++ke++r++
       CCE28061.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPP-------NLCFEIDDAtLEWTWNANHFDFIHLRFIV--GGIEDWTALFKEAYRCC 194
                      9******************99**********99887655.......558999999778999**********8554..45669************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28061.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.9     5e+03      51      69 ..      20      39 ..       3      52 .. 0.77
   2 !   37.5   0.0   2.3e-12   2.9e-09       1      94 [.     111     200 ..     111     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.9
                     ECCCTSS-T.T-EEEEEEES CS
  Methyltransf_11 51 daeklpfed.nsfDlvvsse 69
                      ae++p++d + +D ++s+ 
       CCE28061.1 20 AAEDIPVNDqDDIDSIFSKD 39
                     57899999955899999876 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 2.3e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  +         f   da+ +   + n fD++ +++ +  +ed+ +++ke++R++ pg
       CCE28061.1 111 LDVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWVPPNL-------CFEIDDATlEWTWNANHFDFIHLRFIVGGIEDWTALFKEAYRCCAPG 197
                      8**************9999**************9983333.......3333444423589********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28061.1 198 GWV 200
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.5   4.5e+03      29      63 ..      47      81 ..      19      93 .. 0.72
   2 !   26.0   0.0   8.8e-09   1.1e-05       1      99 []     111     200 ..     111     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.5
  Methyltransf_12 29 spsaiedakeklakrennnnnnvelealdlldldg 63
                      +s++e ++ + + ++ ++++ + +  +d+ +l++
       CCE28061.1 47 ASSVLEYRQLHGRTYHSDKFTANYFIPNDDQQLQS 81
                     45556666666666777777777777777666655 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 8.8e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     l +++++ + +++++a+         +fD +++ + +  ++d+ +++++++++++
       CCE28061.1 111 LDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPPNLCFEIDDATLEWTWNAN---------HFDFIHLRFIVGGIEDWTALFKEAYRCCA 195
                      8********************************66666666666666666666554.........7**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28061.1 196 PGGWV 200
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.6e-06    0.0085       5      38 ..     108     140 ..     104     142 .. 0.90
   2 ?    1.5   0.0      0.18   2.3e+02      56     107 ..     150     200 ..     147     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.6e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a v+G D s+
       CCE28061.1 108 HRVLDVGTGSGIWAIEFA-DQFPNASVIGTDLSP 140
                      68****************.669*********987 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.18
  Methyltransf_31  56 veFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      + Fe+ d++      ++ + fD+i+ + ++  + d  + ++e+ r   pgg +
       CCE28061.1 150 LCFEIDDATLeWT--WNANHFDFIHLRFIVGGIEDWTALFKEAYRCCAPGGWV 200
                      5677777777333..88899***999988899999999999999999998865 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     2e-06    0.0026     162     194 ..     107     140 ..      92     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a ++  ++v+++D+ +
  CCE28061.1 107 IHRVLDVGTGSGIWAIEfADQFPNASVIGTDLSP 140
                 369*************7477999********987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.6e-06    0.0034      21      63 ..      96     138 ..      93     141 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.6e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v  +d 
  CCE28061.1  96 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDL 138
                 689999****9999**********************9998886 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00018      0.23      21      70 ..     106     157 ..      77     170 .. 0.81
   2 ?    3.3   0.0     0.061        78      29      39 ..     193     203 ..     190     224 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00018
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p++ +   d 
  CCE28061.1 106 KIHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNLCFEIDDA 157
                 6799***********9999999875.9**********9877766666655555 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.061
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28061.1 193 CCAPGGWVESV 203
                 *******9865 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.01        13      49      81 ..     108     139 ..      97     144 .. 0.80
   2 !    8.4   0.0   0.00093       1.2     112     154 ..     163     205 ..     151     213 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.01
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++vlDv +G+g +a++++d+  +   v++ D++
       CCE28061.1 108 HRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLS 139
                      589***************99754.456666665 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00093
                      TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 112 feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       + + fD++ + f +  + D +  +keayr   pGG +  +e+
       CCE28061.1 163 WNANHFDFIHLRFIVGGIEDWTALFKEAYRCCAPGGWVESVEY 205
                      56689********************************999986 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.3e-05     0.017      16      95 ..      56     139 ..      42     144 .. 0.69
   2 ?   -3.5   0.0         4   5.2e+03     147     166 ..     185     204 ..     181     216 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
                     .HHHHHS--HHHHHTSSHHHH..HHHHHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  16 ifkkafGislfeaikrdeeer..akfnkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     ++ +++    f+a++  ++ +  ++  ++ ++  ++  ++ l        ++++++DvG G+G  a + + ++P+ +vi  Dl+
      CCE28061.1  56 LHGRTYHSDKFTANYFIPNDDqqLQSEELCHHYLTILLDDQLFLAPleKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 139
                     3444444447777776554440044455666667777777766665115689**************************999985 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4
                     HHHHHHHHH--TT-EEEEEE CS
  Methyltransf_2 147 klLkrvkkalpagGkvivve 166
                      l k+ ++ + +gG v  ve
      CCE28061.1 185 ALFKEAYRCCAPGGWVESVE 204
                     68899999999999886555 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.4e-05     0.018      30      82 ..      87     142 ..      80     163 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.4e-05
  Methyltransf_16  30 kylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      +yl+  l ++    + ++ +  +vl++G G+G+  + +a + p+a+vi tDl+  +
       CCE28061.1  87 HYLTILLDDQlflAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQ 142
                      56666555556655567778899****************************98765 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.4e-05     0.031      24      59 ..     105     140 ..      96     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE28061.1 105 DKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSP 140
                 44569**********************999999765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.6e-05     0.046       5      33 ..     110     138 ..     106     142 .. 0.92
   2 ?   -3.9   0.0       6.2   7.9e+03      83      90 ..     269     276 ..     269     292 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28061.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDL 138
                     89************************876 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6.2
                     ---SGGGG CS
  Methyltransf_4  83 PwfKkrhh 90 
                     Pw K r+ 
      CCE28061.1 269 PWAKDRKL 276
                     99999983 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00013      0.17      69     103 ..     102     135 ..      75     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 le +k  rvL+vG+GsG+ +  +a  + +   v++
  CCE28061.1 102 LEKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VIG 135
                 5567889************999988776555.665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2475.92
//
Query:       CCE28062.1  [L=340]
Description: uncharacterized protein CPUR_01536 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-20   73.5   0.0    2.8e-20   72.8   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    2.5e-10   40.9   0.0    7.2e-10   39.4   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    1.7e-08   35.0   0.0      4e-08   33.8   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    4.1e-07   30.7   0.0    4.6e-06   27.3   0.0    2.5  2  Methyltransf_12  Methyltransferase domain
    0.00022   21.0   0.0      0.015   15.1   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
    0.00073   18.9   0.0      0.014   14.7   0.0    2.1  2  Methyltransf_2   O-methyltransferase domain
    0.00077   18.9   0.0      0.002   17.6   0.0    1.6  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0019   17.8   0.0     0.0042   16.6   0.0    1.5  1  MTS              Methyltransferase small domain
      0.003   16.9   0.0       0.43    9.9   0.0    2.2  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0086   16.2   0.0       0.58   10.3   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.028   14.2   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
      0.023   14.1   0.0      0.042   13.3   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.066   13.0   0.0       0.14   11.9   0.0    1.5  1  DUF938           Protein of unknown function (DUF938)


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0     2e-23   2.8e-20      13     160 ..      96     255 ..      82     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 2e-23
  Methyltransf_23  13 lerllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppell 102
                       ++l+p l++++  rv+d+G+G+Gi++ ++++++   sv+g Dlsp + ++++   + + d + + e++ ++ +fd+I++r+  + ++d+++ll
       CCE28062.1  96 KLFLAP-LEKDKihRVIDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWVPPNLCFEIDDA-SLEWTWNAHHFDFIHMRYIVGGIQDWTALL 187
                      445665.4444446*******************87779************9842222222222.235556999********************* PP

  Methyltransf_23 103 rqiatllkpgGylllseplasl........kedrllldwlylvpagrhi..sffsarslkelleeaGl 160
                      + ++++++pgG+++  e++++l         e  l+   ++ ++ag+++   ff ++  ++++ eaG+
       CCE28062.1 188 KEAYRCCAPGGWVESVEYDVELrsddgsteLEPVLASFGELFRQAGEVLnrPFFVEEIQRQAFDEAGF 255
                      ******************99997666654322223333467788887777788887777888888888 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   5.2e-13   7.2e-10       1      97 []     110     198 ..     110     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 5.2e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      v+d+G+G+G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  ++++fD++++++ +     +d+ ++lke++r++
       CCE28062.1 110 VIDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPP-------NLCFEIDDAsLEWTWNAHHFDFIHMRYIVGG--IQDWTALLKEAYRCC 194
                      89*****************99**********99887655.......558999999788999**********866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28062.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   2.9e-11     4e-08       2      94 ..     112     200 ..     111     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.9e-11
                      EET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      dvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  +        e+  a++e    + + fD++ ++  +  ++d+ ++lke++R++ pgG+
       CCE28062.1 112 DVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWVPPNLCF-----EIDDASLE-WTWNAHHFDFIHMRYIVGGIQDWTALLKEAYRCCAPGGW 199
                      9*************9999**************999433333.....33555555.579999********************************8 PP

                      E CS
  Methyltransf_11  94 l 94 
                      +
       CCE28062.1 200 V 200
                      5 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       7.1   9.8e+03      47      61 ..      20      34 ..       3      54 .. 0.60
   2 !   27.3   0.0   3.3e-09   4.6e-06       2      99 .]     112     200 ..     111     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 7.1
  Methyltransf_12 47 nnnnvelealdlldl 61
                      ++nv+++++d++d+
       CCE28062.1 20 AAENVTVNNQDDIDS 34
                     445555555555443 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 3.3e-09
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLkp 95 
                      ++G+G+G  + ++++++p+++++g+D+sp +         ++ +  n ++e+++ +l+ +   ++fD +++   +  ++d+ ++l++++++++p
       CCE28062.1 112 DVGTGSGIWAIEFADQFPNASVIGTDLSPCQP--------QWVP-PNLCFEIDDASLEWTWNAHHFDFIHMRYIVGGIQDWTALLKEAYRCCAP 196
                      9******************************9........4443.45566666666666666689***************************** PP

  Methyltransf_12  96 gGrl 99 
                      gG++
       CCE28062.1 197 GGWV 200
                      **85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-05     0.015       5      38 ..     108     140 ..     104     142 .. 0.89
   2 ?    3.5   0.0      0.04        55      58     113 ..     152     206 ..     147     238 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rv+D+G+G+G  ++e+a   +p+a v+G D s+
       CCE28062.1 108 HRVIDVGTGSGIWAIEFA-DQFPNASVIGTDLSP 140
                      68****************.669*********987 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.04
  Methyltransf_31  58 Feqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      Fe+ d+       ++   fD+i+ + ++  + d  + l+e+ r   pgg + + +++
       CCE28062.1 152 FEIDDASLeWT--WNAHHFDFIHMRYIVGGIQDWTALLKEAYRCCAPGGWVESVEYD 206
                      66666665233..88899******************************987666655 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   9.9e-06     0.014      17      95 ..      53     139 ..      39     149 .. 0.70
   2 ?    2.1   0.0     0.074     1e+02     146     192 ..     184     233 ..     167     255 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.9e-06
                     HHHHHS--......HHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGis......lfeaikrdeeerakfnkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +++++G++      + ++ + +++ ++  +++ ++  ++  ++ l        ++++++DvG G+G  a + + ++P+ +vi  Dl+
      CCE28062.1  53 YRQIHGRTyhsdkfMTNYLYPNDDQQLESMELGHHYLTILLDDKLFLAPleKDKIHRVIDVGTGSGIWAIEFADQFPNASVIGTDLS 139
                     555555555555332234444444555555655666666666655555411568***************************999985 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.074
                     HHHHHHHHHH--TT-EEEEEE----...TTS---HHHHHHHHHHHHCSS- CS
  Methyltransf_2 146 vklLkrvkkalpagGkvivveavlg...adpsgeletelvdlimlvqteG 192
                     + lLk+ ++ + +gG v  ve  ++    d+s+ele  l ++  l+ + G
      CCE28062.1 184 TALLKEAYRCCAPGGWVESVEYDVElrsDDGSTELEPVLASFGELFRQAG 233
                     579**************999976541013445555555556666666555 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.9   2.6e+03     201     219 ..      21      38 ..      12      68 .. 0.59
   2 !   17.6   0.0   1.4e-06     0.002     162     194 ..     107     140 ..      85     151 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.9
        PrmA 201 keNaelNkveaklevalse 219
                 +eN+++N+ ++  +v+  e
  CCE28062.1  21 AENVTVNNQDDIDSVFS-E 38 
                 45555555444443322.2 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.4e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++v+DvGtGSGi ai  a ++  ++v+++D+ +
  CCE28062.1 107 IHRVIDVGTGSGIWAIEfADQFPNASVIGTDLSP 140
                 369*************7477999********987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.1e-06    0.0042      21      64 ..      96     139 ..      93     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.1e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 kl+l  l+k++ ++v+D+G+G G+ ++++a++ p+a+v  +d +
  CCE28062.1  96 KLFLAPLEKDKIHRVIDVGTGSGIWAIEFADQFPNASVIGTDLS 139
                 689999****9999**********************99988865 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0      0.01        14      49      81 ..     108     139 ..      75     144 .. 0.82
   2 !    9.9   0.0   0.00031      0.43     113     154 ..     164     205 ..     152     235 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.01
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++v+Dv +G+g +a++++d+  +   v++ D++
       CCE28062.1 108 HRVIDVGTGSGIWAIEFADQFPN-ASVIGTDLS 139
                      589***************99754.456666665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00031
                      S-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 113 eddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                      +   fD++ + + +  + D +  Lkeayr   pGG +  +e+
       CCE28062.1 164 NAHHFDFIHMRYIVGGIQDWTALLKEAYRCCAPGGWVESVEY 205
                      55789********************************99986 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00042      0.58      21      62 ..     106     149 ..      85     165 .. 0.81
   2 ?    3.6   0.0     0.048        66      29      39 ..     193     203 ..     191     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00042
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TT CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pg 62 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p+
  CCE28062.1 106 KIHRVIDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPN 149
                 6799***********9999999875.9**********98755444 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.048
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28062.1 193 CCAPGGWVESV 203
                 9******9876 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     2e-05     0.028      31      82 ..      88     142 ..      79     166 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
  Methyltransf_16  31 ylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      yl+  l ++    + ++ +  +v+++G G+G+  + +a + p+a+vi tDl+  +
       CCE28062.1  88 YLTILLDDKlflAPLEKDKIHRVIDVGTGSGIWAIEFADQFPNASVIGTDLSPCQ 142
                      5555444445554556777889****************************98765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.1e-05     0.042       5      33 ..     110     138 ..     106     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     v+++G+G+G + ++ A ++P+ +++G ++
      CCE28062.1 110 VIDVGTGSGIWAIEFADQFPNASVIGTDL 138
                     89************************876 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0001      0.14      24      59 ..     105     140 ..      97     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rv+++++G+G  A+ fA ++pn+  + +d  +
  CCE28062.1 105 DKIHRVIDVGTGSGIWAIEFADQFPNASVIGTDLSP 140
                 44569**********************999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2424.87
//
Query:       CCE28063.1  [L=321]
Description: uncharacterized protein CPUR_01537 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-18   67.1   0.0      3e-18   66.2   0.0    1.5  2  Methyltransf_23  Methyltransferase domain
    8.5e-11   42.4   0.0    3.4e-10   40.5   0.0    2.1  1  Methyltransf_25  Methyltransferase domain
      4e-09   37.0   0.0    1.2e-08   35.5   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
    9.5e-07   29.5   0.0    1.2e-05   25.9   0.0    2.7  2  Methyltransf_12  Methyltransferase domain
     0.0002   21.2   0.0      0.015   15.1   0.0    2.7  3  Methyltransf_31  Methyltransferase domain
    0.00094   18.6   0.0     0.0021   17.5   0.0    1.5  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0061   16.1   0.0      0.014   15.0   0.0    1.5  1  MTS              Methyltransferase small domain
     0.0096   15.3   0.0        1.1    8.5   0.0    2.2  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.012   15.8   0.1       0.64   10.1   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
      0.014   14.8   0.0      0.022   14.1   0.0    1.2  1  GidB             rRNA small subunit methyltransferase G
      0.016   14.9   0.0      0.035   13.8   0.0    1.5  1  Methyltransf_16  Lysine methyltransferase
      0.019   14.3   0.0      0.052   12.8   0.0    1.7  2  Methyltransf_2   O-methyltransferase domain
      0.022   14.2   0.0      0.043   13.3   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.032   14.0   0.0       0.06   13.1   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       8.4   1.1e+04      75      92 ..       8      25 ..       4      33 .. 0.72
   2 !   66.2   0.0   2.4e-21     3e-18      21     124 ..     105     209 ..      76     257 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 8.4
  Methyltransf_23 75 eaaepqgkfdlIvlrevl 92
                     e  +p    dlIv+ +vl
       CCE28063.1  8 EQNPPHTGNDLIVAEDVL 25
                     555677778999999998 PP

  == domain 2  score: 66.2 bits;  conditional E-value: 2.4e-21
  Methyltransf_23  21 raggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkpg 112
                      ++  rv+d+G+G+Gi++ ++++++   sv+g Dlsp + ++++   + + d + + e++ ++++fd+I++r+  + ++d+++l++ ++++++pg
       CCE28063.1 105 DSIHRVIDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWVPPNLCFEIDDA-SLEWTWNANHFDFIHMRYIVGGIQDWTALFKEAYRCCAPG 197
                      34459******************87779************9852222222222.236667********************************** PP

  Methyltransf_23 113 Gylllseplasl 124
                      G+++  e+  + 
       CCE28063.1 198 GWVESVEYEPEF 209
                      *****9976544 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   2.6e-13   3.4e-10       1      97 []     110     198 ..     110     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 2.6e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      v+d+G+G+G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  ++++fD++++++ +     +d+ +++ke++r++
       CCE28063.1 110 VIDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPP-------NLCFEIDDAsLEWTWNANHFDFIHMRYIVGG--IQDWTALFKEAYRCC 194
                      89*****************99**********99887655.......558999999788999**********866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28063.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   9.1e-12   1.2e-08       2      94 ..     112     200 ..     111     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 9.1e-12
                      EET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      dvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  +        e+  a++e    + n fD++ ++  +  ++d+ +++ke++R++ pgG+
       CCE28063.1 112 DVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWVPPNLCF-----EIDDASLE-WTWNANHFDFIHMRYIVGGIQDWTALFKEAYRCCAPGGW 199
                      9*************9999**************999433333.....33555555.589***********************************8 PP

                      E CS
  Methyltransf_11  94 l 94 
                      +
       CCE28063.1 200 V 200
                      5 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1         3   3.9e+03      82      82 ..      32      32 ..       4      83 .. 0.62
   2 !   25.9   0.0   9.6e-09   1.2e-05       2      99 .]     112     200 ..     111     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3
  Methyltransf_12 82 i 82
                     i
       CCE28063.1 32 I 32
                     2 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 9.6e-09
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLkp 95 
                      ++G+G+G  + ++++++p+++++g+D+sp + +     l +         e+++ +l+ +   ++fD +++   +  ++d+ +++++++++++p
       CCE28063.1 112 DVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPPNLCF---------EIDDASLEWTWNANHFDFIHMRYIVGGIQDWTALFKEAYRCCAP 196
                      9*******************************444555555.........555555444444468***************************** PP

  Methyltransf_12  96 gGrl 99 
                      gG++
       CCE28063.1 197 GGWV 200
                      **85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         2   2.6e+03      76      95 ..      17      37 ..       8      57 .. 0.80
   2 !   15.1   0.0   1.2e-05     0.015       5      38 ..     108     140 ..     104     142 .. 0.90
   3 ?    3.0   0.0     0.062        79      57     107 ..     151     200 ..     147     259 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2
  Methyltransf_31 76 Dlilsnevl.naladpdkile 95
                     Dli++ +vl n++ d d+++ 
       CCE28063.1 17 DLIVAEDVLvNDQDDIDSVFS 37
                     899999999888888877765 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.2e-05
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rv+D+G+G+G  ++e+a   +p+a v+G D s+
       CCE28063.1 108 HRVIDVGTGSGIWAIEFA-DQFPNASVIGTDLSP 140
                      58****************.669*********987 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.062
  Methyltransf_31  57 eFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                       Fe+ d+       ++ + fD+i+ + ++  + d  + ++e+ r   pgg +
       CCE28063.1 151 CFEIDDASLeWT--WNANHFDFIHMRYIVGGIQDWTALFKEAYRCCAPGGWV 200
                      566666665233..8889****************999999999999999965 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.6e-06    0.0021     163     194 ..     108     140 ..      95     156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.6e-06
        PrmA 163 eevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                 ++v+DvGtGSGi ai  a ++  ++v+++D+ +
  CCE28063.1 108 HRVIDVGTGSGIWAIEfADQFPNASVIGTDLSP 140
                 79*************7477999********987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05     0.014      21      64 ..      96     139 ..      93     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l k+  ++v+D+G+G G+ ++++a++ p+a+v  +d +
  CCE28063.1  96 QLFLAPLVKDSIHRVIDVGTGSGIWAIEFADQFPNASVIGTDLS 139
                 67888888888889**********************99988865 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.015        19      49      81 ..     108     139 ..      98     144 .. 0.81
   2 !    8.5   0.0   0.00086       1.1     112     154 ..     163     205 ..     151     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.015
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++v+Dv +G+g +a++++d+  +   v++ D++
       CCE28063.1 108 HRVIDVGTGSGIWAIEFADQFPN-ASVIGTDLS 139
                      479***************99754.456666665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00086
                      TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 112 feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       + + fD++ + + +  + D +  +keayr   pGG +  +e+
       CCE28063.1 163 WNANHFDFIHMRYIVGGIQDWTALFKEAYRCCAPGGWVESVEY 205
                      56789*********************************99986 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0005      0.64      21      62 ..     106     149 ..      70     166 .. 0.83
   2 ?    3.4   0.0     0.057        74      29      39 ..     193     203 ..     190     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0005
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TT CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pg 62 
                   ++v+D+g + G w+   + ++ + + v++ Dl p++p    p+
  CCE28063.1 106 SIHRVIDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPN 149
                 5699***********9999999875.9**********98755444 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.057
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28063.1 193 CCAPGGWVESV 203
                 *******9865 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.7e-05     0.022      16      67 ..      74     125 ..      65     134 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
                 HHHS---S--SHHHHHHHCHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHH CS
        GidB  16 NkkinLtsikepeellerhlldslsvlellkekrdkviDvGsGaGlPGipLa 67 
                 N    L s++  + +l+  + d l +++l+k++ ++viDvG+G G+ +i  a
  CCE28063.1  74 NDDQQLESVELCHHFLTILFDDQLFLAPLVKDSIHRVIDVGTGSGIWAIEFA 125
                 677788888888999999999************999*********9888766 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.7e-05     0.035      40      82 ..     100     142 ..      80     164 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
  Methyltransf_16  40 lganelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                       +  + s  +v+++G G+G+  + +a + p+a+vi tDl+  +
       CCE28063.1 100 APLVKDSIHRVIDVGTGSGIWAIEFADQFPNASVIGTDLSPCQ 142
                      4556677889****************************98765 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     4e-05     0.052      42      95 ..      84     139 ..      43     145 .. 0.66
   2 ?   -2.3   0.0       1.7   2.2e+03     147     167 ..     185     205 ..     177     237 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4e-05
                     HHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  42 glqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     + ++  ++  ++ l        ++++++DvG G+G  a + + ++P+ +vi  Dl+
      CCE28063.1  84 LCHHFLTILFDDQLFLAPlvKDSIHRVIDVGTGSGIWAIEFADQFPNASVIGTDLS 139
                     4444455555555555552235799*************************999985 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
                     HHHHHHHHH--TT-EEEEEE- CS
  Methyltransf_2 147 klLkrvkkalpagGkvivvea 167
                      l k+ ++ + +gG v  ve 
      CCE28063.1 185 ALFKEAYRCCAPGGWVESVEY 205
                     688899999999998877765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.4e-05     0.043       5      33 ..     110     138 ..     107     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.4e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     v+++G+G+G + ++ A ++P+ +++G ++
      CCE28063.1 110 VIDVGTGSGIWAIEFADQFPNASVIGTDL 138
                     79************************876 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.7e-05      0.06      21      59 ..     102     140 ..      97     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.7e-05
      DUF938  21 ylakttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                  ++++ +rv+++++G+G  A+ fA ++pn+  + +d  +
  CCE28063.1 102 LVKDSIHRVIDVGTGSGIWAIEFADQFPNASVIGTDLSP 140
                 5778889***********************999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2185.19
//
Query:       CCE28064.1  [L=321]
Description: uncharacterized protein CPUR_01538 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-19   70.7   0.0    1.9e-19   70.1   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.9e-12   47.7   0.0    7.2e-12   45.9   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    3.5e-11   43.6   0.0    1.2e-10   41.9   0.0    1.9  2  Methyltransf_11  Methyltransferase domain
    2.4e-08   34.6   0.0    2.7e-07   31.2   0.0    2.6  2  Methyltransf_12  Methyltransferase domain
    2.7e-06   27.2   0.0     0.0088   15.8   0.0    2.7  3  Methyltransf_31  Methyltransferase domain
    0.00012   21.5   0.0      0.027   13.8   0.0    2.2  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00047   19.7   0.0     0.0012   18.4   0.0    1.6  1  MTS              Methyltransferase small domain
     0.0006   19.3   0.0     0.0014   18.1   0.0    1.5  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0046   17.1   0.1       0.16   12.1   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.014   14.7   0.0       0.05   12.9   0.0    1.8  2  Methyltransf_2   O-methyltransferase domain
      0.017   14.9   0.0      0.031   14.0   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
      0.023   14.5   0.0      0.043   13.6   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
      0.064   12.7   0.0       0.11   11.9   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.079   12.7   0.0       0.13   12.0   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.23   10.8   0.0       0.37   10.1   0.0    1.2  1  GidB             rRNA small subunit methyltransferase G


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   1.6e-22   1.9e-19      15     160 ..      98     255 ..      78     257 .. 0.73

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 1.6e-22
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   e++ ++++fd+I++r+  + ++d+ +ll+
       CCE28064.1  98 FLAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSVVGTDLSPCQPQWVPpNLCFEIDDAT--LEWTWNDNHFDFIHMRYIVGGIQDWKALLK 188
                      4444.4444456*******************8777*************98542222223322..4666799*********************** PP

  Methyltransf_23 104 qiatllkpgGylllseplasl.......kedrllldw.lylvpagrhi...sffsarslkelleeaGl 160
                       ++++++pgG+++  e+  +        + +  + ++  + ++a ++i    ff ++  k+++ eaG+
       CCE28064.1 189 EAYRCCAPGGWVESFEYEPEIcsddgttELEPVFASYgDLFREA-GKIlnrPFFVEEVQKQAFDEAGF 255
                      *************9997655555555543444455552344444.33336677777777777777777 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   6.1e-15   7.2e-12       1      97 []     110     198 ..     110     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 6.1e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  +d++fD++++++ +     +d++++lke++r++
       CCE28064.1 110 VLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPQWVPP-------NLCFEIDDAtLEWTWNDNHFDFIHMRYIVGG--IQDWKALLKEAYRCC 194
                      9******************99**********99887655.......55899999977899***********866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28064.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       8.6     1e+04      49      72 ..      29      52 ..       4      55 .. 0.61
   2 !   41.9   0.0   9.8e-14   1.2e-10       1      94 [.     111     200 ..     111     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 8.6
                     TEECCCTSS-TT-EEEEEEES-CC CS
  Methyltransf_11 49 vadaeklpfednsfDlvvssevlh 72
                     ++d+ ++  ed+s    ++s+vl+
       CCE28064.1 29 QEDIDSVFSEDQSATTSIASSVLE 52
                     444444445556666666666655 PP

  == domain 2  score: 41.9 bits;  conditional E-value: 9.8e-14
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+vvg+Dls+ + +++  +         f   da+ +   +dn fD++ ++  +  ++d++++lke++R++ pg
       CCE28064.1 111 LDVGTGSGIWAIEFADQFpnASVVGTDLSPCQPQWVPPNL-------CFEIDDATlEWTWNDNHFDFIHMRYIVGGIQDWKALLKEAYRCCAPG 197
                      8**************9999**************9983333.......333344442368*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28064.1 198 GWV 200
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.7   3.2e+03      65      78 ..      40      53 ..      13      91 .. 0.62
   2 !   31.2   0.0   2.3e-10   2.7e-07       1      99 []     111     200 ..     111     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.7
  Methyltransf_12 65 ssfDlvvasnvlhh 78
                     +s  + +as+vl++
       CCE28064.1 40 QSATTSIASSVLEY 53
                     45555555555555 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 2.3e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     l +++++ + ++++++         ++fD +++   +  ++d++++l++++++++
       CCE28064.1 111 LDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPQWVPPNLCFEIDDATLEWTWND---------NHFDFIHMRYIVGGIQDWKALLKEAYRCCA 195
                      8********************************6777777777766655555554.........48**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28064.1 196 PGGWV 200
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.4   2.9e+03      76      96 ..      17      38 ..      10      58 .. 0.78
   2 !   15.8   0.0   7.4e-06    0.0088       5      38 ..     108     140 ..     104     142 .. 0.90
   3 !    8.4   0.0    0.0015       1.8      55     107 ..     149     200 ..     146     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.4
  Methyltransf_31 76 Dlilsnevl.naladpdkilee 96
                     Dli +++vl n++ d d+++ e
       CCE28064.1 17 DLIAAKDVLvNDQEDIDSVFSE 38
                     8888888888888888887764 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 7.4e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a vvG D s+
       CCE28064.1 108 HRVLDVGTGSGIWAIEFA-DQFPNASVVGTDLSP 140
                      68****************.669*********987 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0015
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      n+ Fe+ d++      ++d+ fD+i+ + ++  + d ++ l+e+ r   pgg +
       CCE28064.1 149 NLCFEIDDATLeWT--WNDNHFDFIHMRYIVGGIQDWKALLKEAYRCCAPGGWV 200
                      66688888887344..**********************************9965 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0     0.008       9.6      49      81 ..     108     139 ..      97     145 .. 0.81
   2 !   13.8   0.0   2.2e-05     0.027     110     155 ..     161     206 ..     149     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.008
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++vlDv +G+g +a++++d+  +   vv+ D++
       CCE28064.1 108 HRVLDVGTGSGIWAIEFADQFPN-ASVVGTDLS 139
                      589***************99754.567777776 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.2e-05
                      -TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE- CS
  Ubie_methyltran 110 LpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefs 155
                         +d+ fD++ + + +  + D +  Lkeayr   pGG +  +e+ 
       CCE28064.1 161 WTWNDNHFDFIHMRYIVGGIQDWKALLKEAYRCCAPGGWVESFEYE 206
                      56789**********************************9999875 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.8e-07    0.0012      21      64 ..      96     139 ..      93     144 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9.8e-07
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v+ +d +
  CCE28064.1  96 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 139
                 689999****9999************************999976 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.8   4.5e+03      53      73 ..      27      47 ..      17      65 .. 0.57
   2 !   18.1   0.0   1.2e-06    0.0014     162     194 ..     107     140 ..      92     153 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.8
        PrmA 53 keevkvkalfkeeteakelia 73
                +++ +++++f+e+++a+  ia
  CCE28064.1 27 NDQEDIDSVFSEDQSATTSIA 47
                455555666655555444333 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.2e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a ++  ++vv++D+ +
  CCE28064.1 107 IHRVLDVGTGSGIWAIEfADQFPNASVVGTDLSP 140
                 369*************747799*********987 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00013      0.16      21      69 ..     106     156 ..      78     171 .. 0.81
   2 ?    2.7   0.1       0.1   1.2e+02      29      37 ..     193     201 ..     191     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS- CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgd 69 
                 + ++v+D+g + G w+   + ++ + + vv+ Dl p++p    p++ +   d
  CCE28064.1 106 KIHRVLDVGTGSGIWAIEFADQFPN-ASVVGTDLSPCQPQwvpPNLCFEIDD 156
                 6799***********9999999875.9**********987776666665555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.1
                 T-TTSHHHH CS
        FtsJ  29 gaaPGgwsq 37 
                 ++aPGgw +
  CCE28064.1 193 CCAPGGWVE 201
                 9******87 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.2e-05      0.05      25      95 ..      65     139 ..      42     146 .. 0.66
   2 ?   -1.4   0.0         1   1.2e+03     146     162 ..     184     200 ..     169     207 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
                     HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  25 lfeaikrdeeerakf..nkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                      f+ ++  ++ +++    ++ ++  ++  ++ l        ++++++DvG G+G  a + + ++P+ +v+  Dl+
      CCE28064.1  65 KFTTNYFIPNDDQQLdsEELCHHFLTILLDDQLFLAPleKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 139
                     55555544444433311344455556666665555441156899************************9999985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
                     HHHHHHHHHH--TT-EE CS
  Methyltransf_2 146 vklLkrvkkalpagGkv 162
                     + lLk+ ++ + +gG v
      CCE28064.1 184 KALLKEAYRCCAPGGWV 200
                     689*********99976 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.6e-05     0.031      39      82 ..      96     142 ..      79     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
  Methyltransf_16  39 e...lganelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      +    + ++ +  +vl++G G+G+  + +a + p+a+v+ tDl+  +
       CCE28064.1  96 QlflAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQ 142
                      25555556778889****************************98765 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.6e-05     0.043      24      58 ..     105     139 ..      97     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.6e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 ++ +rvL++++G+G  A+ fA ++pn+    +d  
  CCE28064.1 105 DKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 139
                 44569**********************99988866 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.4e-05      0.11       5      33 ..     110     138 ..     106     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.4e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28064.1 110 VLDVGTGSGIWAIEFADQFPNASVVGTDL 138
                     89***********************9875 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011      0.13      69     104 ..     102     136 ..      84     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsi 104
                 le +k  rvL+vG+GsG+ +  +a  + +   vv+ 
  CCE28064.1 102 LEKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VVGT 136
                 5667889*************99998876665.6665 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00031      0.37      23      71 ..      81     129 ..      67     135 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00031
                 S--SHHHHHHHCHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHHHH-T CS
        GidB  23 sikepeellerhlldslsvlellkekrdkviDvGsGaGlPGipLaiarp 71 
                 s +  + +l+  l d l +++l k+k ++v+DvG+G G+ +i  a  +p
  CCE28064.1  81 SEELCHHFLTILLDDQLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFP 129
                 55555566666677888888888888878*********98887765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2432.96
//
Query:       CCE28065.1  [L=340]
Description: uncharacterized protein CPUR_01539 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-21   76.1   0.0    4.4e-21   75.4   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    7.5e-12   45.8   0.0    3.2e-11   43.8   0.0    2.1  1  Methyltransf_25  Methyltransferase domain
      1e-09   38.9   0.0    2.6e-09   37.6   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    4.7e-08   33.7   0.0      4e-07   30.7   0.0    2.4  2  Methyltransf_12  Methyltransferase domain
      1e-05   25.4   0.0     0.0018   18.1   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
    0.00067   19.1   0.0     0.0014   18.0   0.0    1.5  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00085   18.7   0.0        0.3   10.4   0.0    2.3  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00088   18.6   0.0     0.0043   16.4   0.0    1.8  2  Methyltransf_2   O-methyltransferase domain
     0.0033   17.0   0.0     0.0071   15.9   0.0    1.5  1  MTS              Methyltransferase small domain
     0.0092   15.5   0.0      0.019   14.4   0.0    1.5  1  Methyltransf_4   Putative methyltransferase
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.029   14.2   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
      0.015   15.1   0.0      0.026   14.2   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
      0.019   15.1   0.0       0.76    9.9   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
      0.023   14.5   0.0      0.038   13.7   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.17   11.2   0.0       0.28   10.5   0.0    1.3  1  GidB             rRNA small subunit methyltransferase G


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   3.7e-24   4.4e-21       9     160 ..      92     255 ..      80     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 3.7e-24
  Methyltransf_23   9 lsdklerllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp 99 
                      l d l++l+p  +++  rvLd+G+G+Gi++ ++++++   sv+g D+sp + ++++   + + d + + e++ ++++fd+I++r+  + ++d++
       CCE28065.1  92 LLDDLLFLAPIeKDKIHRVLDVGTGSGIWAIEFADQFPnaSVIGTDISPCQPQWVPPNLCFEIDDA-SLEWTWNANHFDFIHMRYIVGGIQDWT 184
                      55778889987334455*******************87779************9852222222222.236667********************* PP

  Methyltransf_23 100 ellrqiatllkpgGylllseplasl........kedrllldwlylvpagrhi..sffsarslkelleeaGl 160
                      +ll+ ++++++pgG+++  e++++l         e  l+   ++ ++ag+++   ff  +  ++++ eaG+
       CCE28065.1 185 ALLKEAYRCCAPGGWVESFEYDVELrsddgsteLEPVLATLGELFREAGKVLnrPFFVQEIQRQAFDEAGF 255
                      ********************999997777664334444444566677765556677776767777788887 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   2.7e-14   3.2e-11       1      97 []     110     198 ..     110     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 2.7e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+Dis+ + + +         n+ f+  da  ++  ++++fD++++++ +     +d+ ++lke++r++
       CCE28065.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDISPCQPQWVPP-------NLCFEIDDAsLEWTWNANHFDFIHMRYIVGG--IQDWTALLKEAYRCC 194
                      9******************99**********99887655.......558999999788999**********866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28065.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   2.2e-12   2.6e-09       1      94 [.     111     200 ..     111     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 2.2e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      LdvG+G+G+ a ++a+++  a+v+g+D+s+ + +++  +        e+  a++e    + n fD++ ++  +  ++d+ ++lke++R++ pgG
       CCE28065.1 111 LDVGTGSGIWAIEFADQFpnASVIGTDISPCQPQWVPPNLCF-----EIDDASLE-WTWNANHFDFIHMRYIVGGIQDWTALLKEAYRCCAPGG 198
                      8**************9999**************999433333.....33555555.589*********************************** PP

                      EE CS
  Methyltransf_11  93 ll 94 
                      ++
       CCE28065.1 199 WV 200
                      85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       7.7   9.2e+03      65      78 ..      40      53 ..       7      81 .. 0.65
   2 !   30.7   0.0   3.3e-10     4e-07       1      99 []     111     200 ..     111     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.7
  Methyltransf_12 65 ssfDlvvasnvlhh 78
                     +s  + +as+v+++
       CCE28065.1 40 QSSTTSIASSVFEY 53
                     34444555555555 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 3.3e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+Disp + +     l +         e+++ +l+ +   ++fD +++   +  ++d+ ++l++++++++
       CCE28065.1 111 LDVGTGSGIWAIEFADQFPNASVIGTDISPCQPQWVPPNLCF---------EIDDASLEWTWNANHFDFIHMRYIVGGIQDWTALLKEAYRCCA 195
                      8********************************444555555.........555555444444468**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28065.1 196 PGGWV 200
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.5e-06    0.0018       5      38 ..     108     140 ..     104     142 .. 0.90
   2 ?    5.1   0.0     0.015        18      57     113 ..     151     206 ..     147     272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.5e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a v+G Dis+
       CCE28065.1 108 HRVLDVGTGSGIWAIEFA-DQFPNASVIGTDISP 140
                      68****************.669**********97 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.015
  Methyltransf_31  57 eFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                       Fe+ d+       ++ + fD+i+ + ++  + d  + l+e+ r   pgg + + +++
       CCE28065.1 151 CFEIDDASLeWT--WNANHFDFIHMRYIVGGIQDWTALLKEAYRCCAPGGWVESFEYD 206
                      566666665233..888********************************987666666 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.3   5.1e+03      51      69 ..      25      43 ..       8      64 .. 0.56
   2 !   18.0   0.0   1.2e-06    0.0014     162     194 ..     107     140 ..      92     167 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.3
        PrmA 51 elkeevkvkalfkeeteak 69
                +++++ +++++f+e+++ +
  CCE28065.1 25 HVNDQDDIDSVFSEDQSST 43
                3334444444444444333 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.2e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a ++  ++v+++Di +
  CCE28065.1 107 IHRVLDVGTGSGIWAIEfADQFPNASVIGTDISP 140
                 369*************7477999********987 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0056       6.7      49      82 ..     108     140 ..      98     146 .. 0.83
   2 !   10.4   0.0   0.00025       0.3     112     154 ..     163     205 ..     149     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0056
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-H CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDine 82 
                      ++vlDv +G+g +a++++d+  +   v++ Di++
       CCE28065.1 108 HRVLDVGTGSGIWAIEFADQFPN-ASVIGTDISP 140
                      589****************9854.5688888875 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00025
                      TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 112 feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       + + fD++ + + +  + D +  Lkeayr   pGG +  +e+
       CCE28065.1 163 WNANHFDFIHMRYIVGGIQDWTALLKEAYRCCAPGGWVESFEY 205
                      56789********************************998886 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.6e-06    0.0043      17      94 ..      53     138 ..      40     146 .. 0.74
   2 ?   -0.5   0.0      0.51   6.1e+02     146     167 ..     184     205 ..     169     251 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.6e-06
                     HHHHHS--....HHHHHTSSHHHHHHHH..HHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE- CS
  Methyltransf_2  17 fkkafGis....lfeaikrdeeerakfn..kglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDl 94 
                     +++++G++     f+a++  ++ +++ +  ++ ++  ++  +++l        ++++++DvG G+G  a + + ++P+ +vi  D+
      CCE28065.1  53 YRQIHGRTyhsdKFTANYLYPNDDQQLQseELSHHYLTILLDDLLFLAPieKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDI 138
                     556666655555898888777766665410444455678889988766622678***************************99887 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.51
                     HHHHHHHHHH--TT-EEEEEE- CS
  Methyltransf_2 146 vklLkrvkkalpagGkvivvea 167
                     + lLk+ ++ + +gG v   e 
      CCE28065.1 184 TALLKEAYRCCAPGGWVESFEY 205
                     579999*****99998866655 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.9e-06    0.0071      22      64 ..      97     139 ..      94     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.9e-06
                 HHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  22 lLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 l+l  ++k++ ++vlD+G+G G+ ++++a++ p+a+v  +d++
  CCE28065.1  97 LFLAPIEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDIS 139
                 6677889998899************************999987 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.6e-05     0.019       5      34 ..     110     139 ..     106     142 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES- CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEir 34 
                     vl++G+G+G + ++ A ++P+ +++G +i+
      CCE28065.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDIS 139
                     89************************9986 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.4e-05     0.029      24      59 ..     105     140 ..      96     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.4e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE28065.1 105 DKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDISP 140
                 45569**********************999999765 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.2e-05     0.026      39      82 ..      96     142 ..      77     165 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-05
  Methyltransf_16  39 e...lganelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                           + ++ +  +vl++G G+G+  + +a + p+a+vi tD++  +
       CCE28065.1  96 LlflAPIEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDISPCQ 142
                      25555566778889****************************98765 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00064      0.76      21      62 ..     106     149 ..      78     166 .. 0.84
   2 ?    2.9   0.0     0.088   1.1e+02      29      38 ..     193     202 ..     191     226 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00064
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TT CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pg 62 
                 + ++v+D+g + G w+   + ++ + + v++ D+ p++p    p+
  CCE28065.1 106 KIHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDISPCQPQwvpPN 149
                 6799***********9999999875.9**********98755444 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.088
                 T-TTSHHHHH CS
        FtsJ  29 gaaPGgwsqv 38 
                 ++aPGgw + 
  CCE28065.1 193 CCAPGGWVES 202
                 9******975 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.2e-05     0.038      32     103 ..      60     135 ..      36     141 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.2e-05
                 GGSSCGGGG.GTTSSS-EEEETTEEE--HHHHHHHHHHTT.....--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  32 efvpesfke.kaYedaplsigynatiSaphmvalalelle.....lkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 ++  ++f   + Y +  ++++ +   S  ++  l+ +ll       +k  rvL+vG+GsG+ +  +a  + +   v++
  CCE28065.1  60 TYHSDKFTAnYLYPNDDQQLQSE-ELSHHYLTILLDDLLFlapieKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VIG 135
                 45555555446777777766654.467777777777777733422356789***********999998776555.665 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00023      0.28      34      67 ..      91     125 ..      65     134 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00023
                 CHHHHHHHGGCS-CCC-..EEEETSTTTTTHHHHH CS
        GidB  34 hlldslsvlellkekrd.kviDvGsGaGlPGipLa 67 
                  lld l  l  +++++  +v+DvG+G G+ +i  a
  CCE28065.1  91 ILLDDLLFLAPIEKDKIhRVLDVGTGSGIWAIEFA 125
                 4667777777777777636*********9888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2701.80
//
Query:       CCE28066.1  [L=1286]
Description: related to tubulin-folding cofactor D (chaperone) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-27   96.0   1.3    1.8e-26   93.1   0.2    2.7  2  TFCD_C    Tubulin folding cofactor D C terminal
  ------ inclusion threshold ------
       0.02   15.3   9.7       0.25   11.8   0.1    5.0  5  HEAT_2    HEAT repeats
       0.17   12.3  14.1        2.8    8.4   0.0    6.9  8  HEAT      HEAT repeat


Domain annotation for each model (and alignments):
>> TFCD_C  Tubulin folding cofactor D C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.086   5.2e+02      69     123 ..     697     752 ..     642     764 .. 0.68
   2 !   93.1   0.2     3e-30   1.8e-26       2     189 .]     999    1176 ..     998    1176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.086
      TFCD_C  69 rlvqLLql..peyresvleGlvvSvGglteslvkassqaLleylkeleskadeeele 123
                 ++  LL+   +  +++ +eGl ++  + + sl ++s +   e l++++  +d ++ e
  CCE28066.1 697 CFASLLDKlaEMIQKKGIEGLLSTEQQQQSSLAQHSLSCVAEILEDCHV-TDYRRPE 752
                 4444443211224555589999999999999999999999999988887.3444444 PP

  == domain 2  score: 93.1 bits;  conditional E-value: 3e-30
      TFCD_C    2 kiigallkqavEKiDrvRavAgkvlqrllhndpakipsiphreel.ekifpeeeeedlnwnspsevfprlvqLLqlpeyresvleGlvvSvGgltes 97  
                  +++ + l+++vEK+DrvRa+ ++vl  +++++ a  + ++  +   ++ f +   + ++ +s s+ f  + +  +  ++++++l+G+v+S++ ++++
  CCE28066.1  999 RLFPCTLRLSVEKLDRVRAEGQAVLGLMMEESAA--KTFQSLTFSsKAYFATL-LSLVSSASLSDKFLDASHDQDRTTWMAELLSGYVTSADTGNDD 1092
                  678899******************9999999988..56666666534444444.223344566666777777778899******************* PP

      TFCD_C   98 lvkassqaLleylkeleskadeeeleslleeliklleenkkddRvvvPllktldlLlesgvleelaeeessflekllkllqkelkksknvqk 189 
                  lv as++aL+e++     +a++ +l+ ++++l++ l++  ++dR++vP+l+++++L+  g +      +   l++++ l+qk+ +k+ n++k
  CCE28066.1 1093 LVIASRAALTEFC-----QASQHNLDLVCRSLVQNLRTFVTQDRIAVPTLEIVAFLFHVGQFPGAKGVD---LRQVCLLTQKAGYKTGNIRK 1176
                  *************.....88*************************************************...******************98 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.4   8.3e+03      47      68 ..     237     259 ..     235     267 .. 0.67
   2 ?   11.8   0.1   4.2e-05      0.25      16      69 ..     358     427 ..     356     433 .. 0.68
   3 ?   -0.9   0.1      0.38   2.3e+03      11      38 ..     560     589 ..     551     615 .. 0.50
   4 ?    4.1   0.1      0.01        63      33      67 ..     915     951 ..     897     967 .. 0.62
   5 ?    1.0   0.0     0.098   5.9e+02      25      53 ..    1214    1245 ..    1204    1259 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.4
      HEAT_2  47 vRraaaeaLgaigd.pealpaLk 68 
                 v   a+++L+  g  ++a++aL+
  CCE28066.1 237 VVPLAIKYLASPGKeKDAAKALL 259
                 55679999999985366666665 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.2e-05
      HEAT_2  16 vrraairaLgrignp.........ealpaLvellededpavRraaaeaLgaig...dpe....alpaLke 69 
                 vr  ++ +L + + +         +a+ +L+e ++d d+ vR  a +aL+ i    dp+    +++a +e
  CCE28066.1 358 VRSVTVSVLRQRQQTtlantemveTAIGYLLESVSDNDTPVRLSASKALSIITlklDPDmasqVVDAVLE 427
                 67777777775444435555666688************************99644434411114444444 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.38
      HEAT_2  11 dpdpevrraairaLgri..gnpealpaLve 38 
                 d+  ++rr a  aL ++  ++p++++  +e
  CCE28066.1 560 DSAGNIRRGASAALQELigRHPDTVERGIE 589
                 333444444444444322334444444444 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.01
      HEAT_2  33 lpaLvellededpavRraaaeaL..gaigdpealpaL 67 
                 +++L ++++d+d +vR ++ ++L  g + + ea p+L
  CCE28066.1 915 QALLDRWAQDPDVDVRVTIMQSLirGNLLHAEAGPFL 951
                 4445556677777777777777733333344444444 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.098
      HEAT_2   25 g...rignpealpaLvellededpavRraaae 53  
                  +   + g +ea++ L  l++++ p+vR  a++
  CCE28066.1 1214 AdgvQAGVDEARRRLGALMSHPWPRVRCVAVD 1245
                  44457778899999999999999999999887 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.71   4.2e+03      13      27 ..     184     198 ..     184     199 .. 0.88
   2 ?    8.4   0.0   0.00047       2.8       4      27 ..     386     409 ..     383     413 .. 0.88
   3 ?    2.2   0.2     0.049   2.9e+02      15      29 ..     504     518 ..     503     520 .. 0.87
   4 ?   -3.1   0.1       2.4   1.4e+04      10      27 ..     559     576 ..     553     577 .. 0.78
   5 ?   -2.5   0.0       1.6   9.3e+03       9      28 ..     634     653 ..     631     654 .. 0.84
   6 ?    1.5   0.1     0.082   4.9e+02       5      24 ..     918     937 ..     915     939 .. 0.79
   7 ?   -1.7   0.1      0.83   4.9e+03      15      29 ..     972     986 ..     971     987 .. 0.85
   8 ?    3.4   0.0      0.02   1.2e+02       8      21 ..    1231    1244 ..    1227    1245 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.71
                 SHHHHHHHHHHHHHH CS
        HEAT  13 speVReaAakaLgal 27 
                 ++e+R+ +++ L +l
  CCE28066.1 184 EWEQRYVVLLWLSHL 198
                 69*******999887 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00047
                 HHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgal 27 
                  ll+  sD++  VR +A kaL  +
  CCE28066.1 386 YLLESVSDNDTPVRLSASKALSII 409
                 689999***************876 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.049
                 HHHHHHHHHHHHHHH CS
        HEAT  15 eVReaAakaLgalae 29 
                 +VR+aA+  + ala+
  CCE28066.1 504 NVRDAACFGIWALAR 518
                 7*********99986 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2.4
                 T-SSHHHHHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAakaLgal 27 
                  D++ ++R+ A  aL +l
  CCE28066.1 559 LDSAGNIRRGASAALQEL 576
                 588889999999999987 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 1.6
                 HT-SSHHHHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLgala 28 
                 + D +++ R+ A  a+g+l+
  CCE28066.1 634 IGDADAQSRRVAGGAFGTLI 653
                 57889999*********985 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.082
                 HHHHHT-SSHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaL 24 
                 l ++ +Dp+ +VR +  ++L
  CCE28066.1 918 LDRWAQDPDVDVRVTIMQSL 937
                 56778********9877766 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 0.83
                 HHHHHHHHHHHHHHH CS
        HEAT  15 eVReaAakaLgalae 29 
                 +VR  A++a+  l e
  CCE28066.1 972 HVRVQALRAVRSLWE 986
                 69*******998876 PP

  == domain 8  score: 3.4 bits;  conditional E-value: 0.02
                  HHT-SSHHHHHHHH CS
        HEAT    8 llsDpspeVReaAa 21  
                  l+s+p p+VR+ A+
  CCE28066.1 1231 LMSHPWPRVRCVAV 1244
                  579*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 8148.67
//
Query:       CCE28067.1  [L=402]
Description: related to endo-1,6-alpha-D-mannanase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-44  150.8   5.2    1.5e-43  149.7   5.2    1.5  1  Glyco_hydro_76  Glycosyl hydrolase family 76
    6.4e-06   25.5   0.1     0.0059   15.7   0.0    3.5  4  Glyco_hydro_88  Glycosyl Hydrolase Family 88
  ------ inclusion threshold ------
      0.044   12.7   0.0       0.24   10.3   0.0    2.1  2  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   5.2   2.6e-47   1.5e-43      31     352 ..      57     396 ..      27     401 .. 0.86

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 2.6e-47
                     ES-GHHHHHHHHHHHHHHHHHCTTC.......................CCHHHHHHHHHCCCT.........CEE-SSST...TCTCSSEHHHHH CS
  Glyco_hydro_76  31 dpyywWeagalfgalidywrltgds.......................tyndlitqallaqag.........enydympa...nqsrtegnDDqa 90 
                     ++  wW+ g ++++l d+  l  d+                       t++++ +++++  ++          ++ ++ +   n+  +e++DD +
      CCE28067.1  57 WDNAWWNSGNALTTLADFASLRTDEanklniggymrntfvqaqktnvqTFKAMAKNGMVTSTNclssdhgcmAKRVFLGKrgfNHFINEYYDDEG 151
                     3457**************9999998999***************999999*******99997777764444432233544422255559******* PP

                     HHHHHHHHHHHH.....H--HHHHHHHHHHHHHHHHCB-SCSCCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHHHHHH.--CHHHHHHHHHHH CS
  Glyco_hydro_76  91 fwglaamtaaernfpeptdepswLalAqavfntqasrwdeetcgGGlrWqiftwnsgydyknsisngplfqlaarLaryt.gnetYlewAekvwd 184
                     +w+l  + a  +     ++e+++++ A ++f+ + +   +  c GG++W+     +  +y  +isn  ++ +aa Lar    n+t+   A   w+
      CCE28067.1 152 WWALGLIHAFDV-----SRERDYINAAVNIFHDMQTGQGTP-CKGGVYWN-----KDRKYVSAISNELYLSVAASLARRMpHNKTLERIAIDQWN 235
                     ***********8.....99**************99997665.*******5.....699*******************9888************** PP

                     HHHHHSCSBTTTS-B-SEEETTTCCEEEE---HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCEECTTEEEEE.E-TT.STTCCTTH CS
  Glyco_hydro_76 185 WvedvgliddedwlvyDgasvednctdinklqwtYnqGtylsgaaylynaTgdekWldrvkgllnatlstffpdgnilyev.acep.sekcnnDq 277
                     W e++g+i + d+l++Dg+  +++c +    +w+YnqG++l+g a ly++Tg   + d++  +++a+ + + ++++il+e+ +ce  + +c +D 
      CCE28067.1 236 WFERSGMI-NRDHLINDGL--DGQCRNNHLQTWSYNQGVVLGGLAELYRLTGHRIYIDKAVTIARAAIKALSNSQGILVETdKCELrPGNCGKDG 327
                     ********.*********8..89**9999999***********************************99999999****97358879888***** PP

                     HHHHHHHHHHHHHHH..SHHHHHHHHHHHHHHHHHHHTTTB...TTTSB-TTTTTSSCCHHHHHHHHCCHHH... CS
  Glyco_hydro_76 278 rsFkgilarwlaltaqlapetadtiepllrasaeaaakscsggsdgttcglkwlkgtwdgdaglgeqmsaleviq 352
                     ++Fkg+++r l+++ ++ap+  +++++++  +a  +++ +++  +++ +g+ w+  ++  +    +q sal v+ 
      CCE28067.1 328 QQFKGVFVRNLGYLNKVAPK--PEFRDFILRNADSIWRHNRD--KQNRLGVAWTGPHVAATG--STQSSALDVLV 396
                     ******************96..56999999*******99998..8899******66544433..56777777655 PP

>> Glyco_hydro_88  Glycosyl Hydrolase Family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.019   1.2e+02     146     181 ..      30      65 ..      10      70 .. 0.84
   2 !    3.5   0.1     0.005        30      31      67 ..     150     186 ..     134     236 .. 0.86
   3 !   15.7   0.0   9.9e-07    0.0059      22      63 ..     260     301 ..     244     318 .. 0.84
   4 ?   -3.2   0.0      0.56   3.4e+03      33     165 ..     333     365 ..     331     372 .. 0.52

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.019
                     CGTHHHHHHHHHHHHHHHHHBETTTSEB-SEEETTT CS
  Glyco_hydro_88 146 gepkyldeaikqflltarhlfdpetGlyyhgwdesg 181
                       + y d+ai  +++ + + ++  tGl+  +w +sg
      CCE28067.1  30 SAQSYTDNAIASIEALNGYWYNIRTGLWDNAWWNSG 65 
                     4579************************99998876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.005
                     HHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCTTS- CS
  Glyco_hydro_88  31 nGvflsglleayeatgdkeyldyakawadslideggk 67 
                     +G +  gl++a++ + + +y+++a +++ +++  +g+
      CCE28067.1 150 EGWWALGLIHAFDVSRERDYINAAVNIFHDMQTGQGT 186
                     68899999999***99999999999999999888776 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 9.9e-07
                     STTCCE.HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCC CS
  Glyco_hydro_88  22 kkenewewtnGvflsglleayeatgdkeyldyakawadslid 63 
                     ++ + w +++Gv+l+gl+e+y  tg   y+d a ++a+  i+
      CCE28067.1 260 NHLQTWSYNQGVVLGGLAELYRLTGHRIYIDKAVTIARAAIK 301
                     55678**************************99999887776 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 0.56
                     HHHHHHHHHHHHH--HHHHHHHHHHHHHCCCTTS-CTTSGGGTGHHHHHHHHHHHH-THHHHHHHHHHHHHHHHCS-B.TTS.B.SBTTSTTEEE CS
  Glyco_hydro_88  33 vflsglleayeatgdkeyldyakawadslideggktelelDdidigllllllyeltkderykeaaeeladyvlakpprtseGgfwhkkkepeqlW 127
                     vf++ l ++ + + ++e++d++ ++ads                                                                   
      CCE28067.1 333 VFVRNLGYLNKVAPKPEFRDFILRNADSI------------------------------------------------------------------ 361
                     55555555555666666666666655553.................................................................. PP

                     THHHHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHHH CS
  Glyco_hydro_88 128 lDgLfMaipllaklskvtgepkyldeaikqflltarhl 165
                                                        rh 
      CCE28067.1 362 ----------------------------------WRHN 365
                     ..................................3333 PP

>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.089   5.3e+02      95     132 ..     203     239 ..     156     249 .. 0.59
   2 ?   10.3   0.0     4e-05      0.24      83     130 ..     272     317 ..     270     390 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.089
                     .S-HHHHHHHHHHHHHHHHGGGSSTTS---SEEETTT- CS
  Glyco_hydro_47  95 ekkedvllekAveladrLlpAFdtpsglpvarvnlkkr 132
                     + +++++l+ A+ la+r+ p  +t +++++ ++n+ +r
      CCE28067.1 203 AISNELYLSVAASLARRM-PHNKTLERIAIDQWNWFER 239
                     556777888888888774.5567777777777777554 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 4e-05
                     HHHHHHHHHHHH.S-HHHHHHHHHHHHHHHHGGGSSTTS---SEEETT CS
  Glyco_hydro_47  83 yLGGLlsaydlsekkedvllekAveladrLlpAFdtpsglpvarvnlk 130
                     +LGGL   y l+  +++++++kAv++a+  ++A + ++g+ v++ + +
      CCE28067.1 272 VLGGLAELYRLT--GHRIYIDKAVTIARAAIKALSNSQGILVETDKCE 317
                     69**********..********************99999988765543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2868.69
//
Query:       CCE28068.1  [L=854]
Description: uncharacterized protein CPUR_01542 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00044   20.1   0.2     0.0017   18.2   0.0    2.0  2  SH3_9     Variant SH3 domain
     0.0082   15.8   0.0      0.021   14.5   0.0    1.7  1  SH3_2     Variant SH3 domain
  ------ inclusion threshold ------
      0.072   12.7   0.3       0.14   11.8   0.3    1.5  1  SH3_1     SH3 domain


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.45   2.7e+03      15      35 ..     673     696 ..     670     709 .. 0.63
   2 !   18.2   0.0   2.8e-07    0.0017       6      49 .]     736     787 ..     732     787 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.45
       SH3_9  15 LqrGDvitvi...eesedgWlegs 35 
                 L+ G  ++ i   e++++ W+++ 
  CCE28068.1 673 LCHGAKVVGIewpEKYNGEWIFAW 696
                 555554444434455899**9875 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 2.8e-07
       SH3_9   6 epredd.....eLsLqrGDvitviee.sedgW.legsl.tGrtGlvPanyve 49 
                  ++e+d     +L +++++ it+i+  + + W + g++ +G++G +P+ ++e
  CCE28068.1 736 HQKEKDkdqslWLKFDKNEAITNISYvDPEFWcWSGTNsKGKRGIFPKDFLE 787
                 555555558889************8834577799***99********98875 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.4e-06     0.021      15      56 ..     746     788 ..     732     789 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.4e-06
                 B.--B-TTEEEEEE..EEEECTTE.EEEEE.CCCEEEEEGCGEEE CS
       SH3_2  15 e.LsfkkGdvikvlslgskdsdgw.wegev.gGrvGlfPsslvee 56 
                 + L f k++ i  +  +  d++ w w g++ +G++G+fP +++e+
  CCE28068.1 746 LwLKFDKNEAITNI--SYVDPEFWcWSGTNsKGKRGIFPKDFLEP 788
                 26889999988888..55588999*****************9997 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   2.4e-05      0.14      14      48 .]     748     783 ..     741     783 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.4e-05
                 XEBSTTEEEEEEEECSS.SE.EEEEETTSTEEEEEEG CS
       SH3_1  14 LsfkkGDviivleksed.gW.wkgrlkgtgkeGliPs 48 
                 L f k++ i++++ ++   W w g +   gk+G++P+
  CCE28068.1 748 LKFDKNEAITNISYVDPeFWcWSGTNSK-GKRGIFPK 783
                 89***************98967788886.7******5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 6070.82
//
Query:       CCE28069.1  [L=554]
Description: related to general amidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-91  306.9   0.0    2.3e-90  303.7   0.0    1.9  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.7   0.0   1.3e-94   2.3e-90       2     451 .]      86     536 ..      85     536 .. 0.85

  Alignments for each domain:
  == domain 1  score: 303.7 bits;  conditional E-value: 1.3e-94
                 HHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT.......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS.--HHHHHHHHTT-EEEEE CS
     Amidase   2 lveaflkrieavneklnalvtvfieealaqAakldkkra.rgkekgpLhGvPisvKDnidvkgvpttaGskalenypaek.DatvverLkkaGavilgk 98 
                 ++ af+kr++ +++ +++l + f++ ala+A+ ld++ + +gk+ gpLhG+P+s+KD+++v+gv++t+G+ a+ ++pa +  + +v +L + Gav+++k
  CCE28069.1  86 VTTAFCKRAAIAQQLTSCLTEHFFDRALARAKYLDEYLSrEGKPMGPLHGLPVSIKDSFCVEGVQSTLGYVAFLKKPAATaQSALVNMLLDLGAVLYVK 184
                 899************************************9*******************************9999997655****************** PP

                 E--SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-......-SSTTT-EEE CS
     Amidase  99 TnmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv......alessldvvG 191
                 Tn+++++m++++ n +fg+t NP + + t+GGSSGG++A+ A +++ +++GtD++GS+RiPA ++g++G+KPt  r++  g v      +l+    vvG
  CCE28069.1 185 TNVPQTLMTADSVNHIFGRTLNPNNIRLTAGGSSGGEGALMALRGSIMGVGTDIAGSVRIPAQCNGIYGFKPTADRIPFGGQVspvetdRLPCLVPVVG 283
                 ************************************************************************************99999999999**** PP

                 EEESSHHHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHH CS
     Amidase 192 plarsvedlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyyl 290
                 pla+s+ dl+l++++i+   p++++ s     ++ +++ l+++ ++l iG+v ed+++ l+p+++ra+++a+kaL +aGh++v+++  s ++ +s  ++
  CCE28069.1 284 PLAHSIADLRLFVKAIWDANPNRYDASAH---AGPWQK-LQHHTRPLTIGLVPEDEHFPLHPPIRRAMNSAVKALAAAGHKLVPLS-NSADRSISYGNR 377
                 ***************************83...455555.55556****************************************76.455666664555 PP

                 HHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC..BSEEEEESSSSS-- CS
     Amidase 291 ilvaeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafee..lDvllsPtaptpap 387
                 +++ + +++  r +                  ++    ++   + ++     + ++    k  + +q + + +++++++ + +  +Dv l+P+a  +a+
  CCE28069.1 378 LAF-QYFTYAPRVDHL------------AASGEPPVTSVSHGYHPMFTGAFPVPQELEPLKKINAMQLALHKYQDAWRQTWVDknIDVFLAPAAQNTAV 463
                 555.444443322222............222222223333333333333333333333223355555566667777777776699************** PP

                 BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT............TECEEEEEEESTT-HHHHH CS
     Amidase 388 rlgekdktidsytvlynlldftavvvpvnlaglpalsvpagksed...........glPvGvqvigkafqeetlL 451
                  ++     +  y+ l+nl d++a v+p   a +  +  p+  ++            g+P ++q+i+++f +e++L
  CCE28069.1 464 AHDTYG--WPPYSLLWNLVDYPACVIPYGKASKLLDPQPMYLNDGiqpnyepedvdGAPCALQIITPRFLDEQCL 536
                 *99776..489********************999999999998778999************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4253.37
//
Query:       CCE28070.1  [L=1377]
Description: related to IST2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.6e-107  359.0  10.1   4.9e-107  358.6  10.1    1.2  1  Anoctamin       Calcium-activated chloride channel
    2.6e-08   33.1   0.0    4.9e-06   25.6   0.0    2.2  2  Fungal_trans_2  Fungal specific transcription factor domain
    2.1e-07   30.9   7.1    4.1e-07   30.0   7.1    1.5  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.6  10.1  8.2e-111  4.9e-107       1     446 [.     179     638 ..     179     641 .. 0.91

  Alignments for each domain:
  == domain 1  score: 358.6 bits;  conditional E-value: 8.2e-111
   Anoctamin   1 IrdyFGekiAlYFawlgfytsallppavlGlllflyglatitlfdneltvvfalfmviWatlflelWkrreaelaykWgtsdfeeeeeprpefrgelkr 99 
                 Ir+ FGe+iA+YFa+l  y+ +l++p+++G++ ++       l   +++ v+al   +W+++fle+Wk++e +la++Wg++++++ + prpef+ +++ 
  CCE28070.1 179 IRNKFGESIAFYFAFLRSYFVFLAFPSAMGFAAWML------L--GQFSSVYALGCGLWSVIFLEYWKKKEVDLAVQWGVRGVSAIQLPRPEFEWDYEA 269
                 89*********************************5......2..24899************************************************* PP

   Anoctamin 100 espvtgeeefyyppwkrrlfrllvslplvllliclavvgvlilrclalqelvssvke.....llsflptvlnlvlililnevykklaiwltdlEnhrtq 193
                 e+ vtge  ++y+ +k r+  +l+++p+   ++c++v+g l+++  +l++++++v++      l f+pt++++v+ + ++ v  k a  lt+ En+ t 
  CCE28070.1 270 EDAVTGEPVKVYSYKK-RFQTQLLQIPFA--IACIVVLGGLVVIANSLEIFITQVYDgpgkqYLVFVPTMILVVFTPTFSAVLMKAASVLTHRENYDTV 365
                 99**********9888.9999******99..99999999888877888********986554444********************************** PP

   Anoctamin 194 seyekslilKvflfqfvnsylslfyiaFvkgkflkypgkylr..............rseecdeegcleelkeqLaiilvtkqllnnilevllPylkekl 278
                 ++++ +l+ K f+++f++sy+ l++++Fv+ +f +   + l+              +  + + ++++e+++ q+++ +vt q++n+++ev++Py k+k+
  CCE28070.1 366 DAHKAALVQKQFVLNFMTSYMALLFTGFVYIPFGDILLPFLDfwrhaaqtltfsekTLPTQQFRINPERISSQMFYCTVTAQVVNFATEVIVPYAKQKA 464
                 *******************************776555555557777777888998888889999******************************98877 PP

   Anoctamin 279 kkkkk....esekdekeeeeskkltqaekeyelkkyedlfddYlemviqfGyvtlFsaafPlapllallnniieirldafklvtelrRpvperaesiGi 373
                  +k k    ++ + ++e+ee ++l+++++e  l++y+ ++ddY emv+qfGy++lFs+a+P+a++++l+nn++e+r+d +k+   ++Rp+p r +siG+
  CCE28070.1 465 FAKAKelqsRQPEIQDEPEEAAFLKRVRDECALETYD-VTDDYREMVMQFGYLSLFSVAWPMAACCFLINNWVELRSDGLKIAVSCKRPIPWRSDSIGP 562
                 7644456667888899999*****************6.89*********************************************************** PP

   Anoctamin 374 Wqkilealgvlavitnallialtsd.pek..dteqylsvlaarlafvvvlehvvlllkyliavlipdi.pkwvkeei 446
                 W+++l +l++l+ it a+++ l s  +++   t  +++ + ++l++++ +eh++ll++ ++++l++++ +  v+ e+
  CCE28070.1 563 WLDALGFLSWLGSITSAAIVFLCSGaKNGnrGTASQITAWGCLLSVLL-AEHFYLLMQQVVRMLMNKVeSIGVQRER 638
                 ********************88877633357788899*********99.*****************99344455554 PP

>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   8.3e-10   4.9e-06       2     203 ..     999    1192 ..     998    1201 .. 0.84
   2 !    5.4   0.0    0.0011       6.7     291     339 ..    1272    1329 ..    1209    1365 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 8.3e-10
  Fungal_trans_2    2 lldyyldnvap.llspvpessnpfrkvllplalsnk.allhallalsafhlqskgpkdslereakrykslalkelqealaelsstlsrnekyk 92  
                      l++ ++++    l+s + + ++  ++ +lp++ ++  al+  ++ + a       p+   ++ + +y ++al+ ++ +l +  ++l+     +
      CCE28070.1  999 LFSEFVNYGINtLFSTSVNDEDNILAEHLPRISQESdALCAICITIQASLC--GRPE--AQHLIFKYFDMALSSFRAELGNSVKQLK-----D 1082
                      556666666664445555556777777777776666355555555555444..3334..4999************************.....* PP

  Fungal_trans_2   93 diLaaiLllcsieissgdvsdwrvhLeaatsliksrggskasssslsskarfllrifayldilssttlgrgpsfpseeyekllen....kkee 181 
                       ++aa L+l       g+   w +hL++  ++  +rg++ ++ +s+ +  + l++ + yld+ +    +  + ++   +++++++    ++ +
      CCE28070.1 1083 GTFAAGLMLSTLGLNRGC--GWTMHLHGIYNVSLTRGLQ-EPLNSQPPFRKHLIEVLGYLDLPGFAVGR--QNPSIGVWRRHCREpgylCRPP 1170
                      ******************..9******************.99999999****************99999..8888899999999999****** PP

  Fungal_trans_2  182 sdsgldplmGcsnslillisei 203 
                      + ++++ + G+++sl+ l+s i
      CCE28070.1 1171 QVDSVEFVSGLPRSLLDLLSAI 1192
                      *******************987 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0011
  Fungal_trans_2  291 lvkkllellellp....sspvaiasLl.....WplFiaGceavdeddRdfvrrrleel 339 
                      +v++++++ + +      s++   sLl     +plF+aG+ea   + R ++++ +++ 
      CCE28070.1 1272 IVTRIISHVDAITrayvASDGHRDSLLfnaidYPLFVAGIEADVMNARPELKDAIKNC 1329
                      455555555555555554444456666255555*********9999999888877765 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   7.1   6.9e-11   4.1e-07       2      39 ..     836     873 ..     835     874 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 6.9e-11
                 S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39 
                 +C++C+ k+ +Cd+ +P+C  C +++++C+ y+ + k+
  CCE28070.1 836 GCWTCKAKRFQCDRTRPHCLTCTQKGFKCEGYEMRLKW 873
                 7*****************************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.57
# Mc/sec: 7288.57
//
Query:       CCE28071.1  [L=323]
Description: uncharacterized protein CPUR_01545 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-11   44.7   1.0    3.9e-11   43.9   1.0    1.4  1  Metallophos    Calcineurin-like phosphoesterase
    3.4e-05   24.1   1.1    0.00046   20.4   1.1    2.3  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   1.0   4.3e-15   3.9e-11       2     203 ..      58     233 ..      57     234 .. 0.69

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 4.3e-15
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEE.EEEC-TTSCHHHHHHHHHHHHHHHHHHHEHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipv.ylllGNHegfeeellnkygylgifsepwrsd 98 
                  r+++i+D+H               d++ + +  d++++aGDl++ g     ++++l++l  +p+pv ++++GNH+  + ++ ++  +  + ++  + d
   CCE28071.1  58 RVVCISDTH---------------DQIVDVPPGDILIHAGDLTNAGTAAD-IQKQLDWLNTLPHPVkIVIAGNHD-SYFDIRSRCSDDRRCGARLNFD 138
                  677777888...............333344466*************9999.9*********99999*********.4446666666655554444444 PP

                  HCEEETSEEEEEETTE...EEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTTE CS
  Metallophos  99 aevfnnlplaslgsgs...lkvlllhGgspellvsldklgslnleleapepgdewlkdlekrekadwvivlgHsplyrgsgylfgdealedllkkygv 193
                      ++++l++  s +    + + ++G  p++    +  +++ ++  +++    w+++     + +++i+++H p+  +     g +al +   + ++
   CCE28071.1 139 ----GIVYLQGESSVHdirGREISIFGA-PDI--PECGPENFAFQYAPTR--TPWFSK----VPPQTDILVTHTPPKHHLDLDIGCPALLREVWRVKP 223
                  ....455555522222323256666665.333..2333334444444444..89****....***************788888888888866666668 PP

                  SEEEEESSSS CS
  Metallophos 194 dlvisGHtHv 203
                   l ++GH H+
   CCE28071.1 224 RLHVFGHCHC 233
                  89999**996 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   1.1   5.1e-08   0.00046       2     130 ..      58     234 ..      57     242 .. 0.55

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.1e-08
  Metallophos_2   2 klaiiSDlHsnldaleavlealkevgvdaiihaGDl..eeeep....evleellela.pvl.aVrGNnD........................... 62 
                    +++ iSD+H      +++++       d +ihaGDl    ++     + l++l  l  pv+ ++ GN+D                           
     CCE28071.1  58 RVVCISDTH------DQIVDV-PPG--DILIHAGDLtnA-GTAadiqKQLDWLNTLPhPVKiVIAGNHDsyfdirsrcsddrrcgarlnfdgivyl 143
                    578899999......555555.556..9*******9632.3332232355555555597752689****666666555555444444444444444 PP

  Metallophos_2  63 ...eevveedvlreaaelgtdl.....................peeaelel................agekvlliHgdpl...gvkdalaellkea 115
                       +                                       pe     +                +++++l++H  p+    ++ +  +ll+e 
     CCE28071.1 144 qgeS-----------------SvhdirgreisifgapdipecgPEN----FafqyaptrtpwfskvpPQTDILVTHTPPKhhlDLDIGCPALLREV 218
                    4321.................0333333333333333334443222....1222233333333333455558888887768777777777777777 PP

  Metallophos_2 116 eegsd.vvvcGHtHvp 130
                    + ++  + v+GH H +
     CCE28071.1 219 WRVKPrLHVFGHCHCA 234
                    7777779999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2308.91
//
Query:       CCE28072.1  [L=898]
Description: related to mixed-linked glucanase precursor MLG1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-13   48.6   6.4    2.1e-12   47.0   6.4    1.9  1  WSC             WSC domain
    5.9e-05   22.6   0.0    0.00023   20.7   0.0    1.9  2  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   6.4   2.4e-16   2.1e-12       2      82 .]     398     475 ..     397     475 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 2.4e-16
         WSC   2 lGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassss..CnasCsGdssqtCGg 82 
                 lGC+ +s       +   a++ +mt+++C++ C+  g+ yag+ +  +C+C++sl+a++   +++   C+ +C+Gd+ q+CGg
  CCE28072.1 398 LGCFGSS--DGFEGFLMVADSRDMTVKQCVKLCN--GTMYAGTYHT-QCFCADSLSANTRAVDEEFgtCDHPCPGDKDQFCGG 475
                 7999966..4445555678999***********8..99*****977.*********998887766589**************8 PP

>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.5e-08   0.00023      29      78 ..      70     122 ..      42     148 .. 0.77
   2 ?   -2.7   0.1      0.39   3.5e+03     114     125 ..     190     201 ..     187     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.5e-08
                     EEEEEEEECCEESSEEEEEEEE..---STTEEEEEEEETGGTSTTEEEEE.EE CS
  Glyco_hydro_16  29 esgsrikskksflyGkvearik..aaksaGvvtafylssedekahdEiDi.Ef 78 
                     + + r++sk+++++G + a+    ++++ G+++af+    ++++ +EiD+ E 
      CCE28072.1  70 RPSIRLESKETYTHGLFVADFLhmPPSQCGLWPAFWSYGPNWPNDGEIDLiEG 122
                     448899***********999887899999********9999********9784 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.39
                     EEEEEEETTEEE CS
  Glyco_hydro_16 114 tYaieWtpdkik 125
                      Ya+eW++++ik
      CCE28072.1 190 VYAMEWDSEYIK 201
                     59*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6238.59
//
Query:       CCE28073.1  [L=432]
Description: related to peroxisome assembly protein PAS10 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-51  174.0   8.4    4.2e-51  173.7   8.4    1.1  1  Pex2_Pex12  Pex2 / Pex12 amino terminal region
    0.00078   19.5   1.1     0.0013   18.8   1.1    1.3  1  zf-C3HC4_4  zinc finger of C3HC4-type, RING
  ------ inclusion threshold ------
      0.024   14.5   1.5      0.041   13.7   1.5    1.3  1  zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
      0.027   14.8   2.3      0.048   14.0   2.3    1.4  1  zf-RING_2   Ring finger domain
       0.05   13.5   1.8      0.092   12.6   1.8    1.4  1  zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
       0.12   12.3   1.2       0.21   11.5   1.2    1.4  1  zf-C3HC4    Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> Pex2_Pex12  Pex2 / Pex12 amino terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.7   8.4   1.4e-54   4.2e-51       2     225 .]      25     278 ..      24     278 .. 0.89

  Alignments for each domain:
  == domain 1  score: 173.7 bits;  conditional E-value: 1.4e-54
  Pex2_Pex12   2 eelesllkpalryilrllagqrfp.....ilnyfdEikllldlllelltlksgngTfgeefygLkrv.............ssselkkrrllskrqrlls 82 
                 ++l++ll+p lry+l+ +a+qr+p     iln+fdE+++ll+l++e+++l++++++f+e+fygLkr              +++ +++ ++ls +++++ 
  CCE28073.1  25 QQLNALLPPTLRYLLT-VATQRHPryllrILNSFDELYALLMLAVERYYLRTRGASFTEHFYGLKREkalksdiprasvsAPHLVREVLKLSGSDVWKN 122
                 8***************.68************************************************999999999888888888888*********** PP

  Pex2_Pex12  83 llllvlipYlkekldelysarerysaealsd.......earnsreslkkrlkrlllklypfiealyellnlvlqllYL..sgkyysllkrllgiryvrl 172
                 l++l+++pYlk+klde y   + + ++al         e+++ +++  ++++++l ++yp+++a+y++  lv+ l YL   +ky+++l++l+g+r++r+
  CCE28073.1 123 LMVLIGVPYLKRKLDESY---QVNAPRALLGssytrmpENPTLKDRFTHYYRWFLINIYPSVHAAYHFTTLVFYLGYLfdRTKYHNPLMWLIGTRLRRM 218
                 ******************...33333333334477889************************************************************* PP

  Pex2_Pex12 173 npadq.......rrnarrpsye.ylnrqllwna..lkellgllllllllsvfllkllewwyss 225
                 + ad+       +   +rp+ +   +r+l+ ++   + +l  l+lll++s+f+lk+leww++s
  CCE28073.1 219 TTADYqaiealsK---QRPGNRpGRPRSLFSPRewGSTALSGLSLLLPASIFALKFLEWWHQS 278
                 *********7652...22222224467776554327999*********************985 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.1   4.4e-07    0.0013       1      35 [.     360     394 ..     360     399 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.4e-07
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslqkepdge 35 
                 CPiC++ +  P+  + G ++C  Ci ++ +  ++ 
  CCE28073.1 360 CPICRADIVTPTACQTGVVYCYACIHRWIEGGHDR 394
                 ***************************99877765 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.5   1.4e-05     0.041       3      34 ..     358     388 ..     356     395 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.4e-05
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHH CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekll 34 
                  +C+iC     + + +++g + +C++C  ++ 
  CCE28073.1 358 ALCPICRADIVTPTACQTGVV-YCYACIHRWI 388
                 68*****************99.******9985 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   2.3   1.6e-05     0.048       3      35 ..     360     389 ..     358     393 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
   zf-RING_2   3 CpICleelssadsvlllpCgH..vfhreClerwlr 35 
                 CpIC  ++ ++       C+   v+++ C+ rw++
  CCE28073.1 360 CPICRADIVTPTA-----CQTgvVYCYACIHRWIE 389
                 ****877755444.....554327*********97 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.8   3.1e-05     0.092       2      32 ..     360     389 ..     359     393 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.1e-05
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLe 32 
                 CpiC + + +p +  + g v+C+ Ci+r++e
  CCE28073.1 360 CPICRADIVTP-TACQTGVVYCYACIHRWIE 389
                 **********9.67777899********987 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   7.1e-05      0.21       1      32 [.     360     390 ..     360     397 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.1e-05
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks 32 
                 CpiC   +++p+ + + +  +C++Ci ++++ 
  CCE28073.1 360 CPICRADIVTPT-ACQTGVVYCYACIHRWIEG 390
                 **********99.6666777*********994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3216.89
//
Query:       CCE28074.1  [L=126]
Description: uncharacterized protein CPUR_01548 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 923.14
//
Query:       CCE28075.1  [L=166]
Description: uncharacterized protein CPUR_01549 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-13   50.3   0.0    3.4e-13   49.8   0.0    1.3  1  4HBT      Thioesterase superfamily
     0.0076   16.5   0.1      0.012   15.9   0.0    1.4  1  4HBT_3    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   3.8e-17   3.4e-13       2      77 ..      70     148 ..      69     150 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 3.8e-17
                 SSB-HHHHHHHHHHHHHHHHHHTTST...TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCE CS
        4HBT   2 GvvhgGvylallDeaagaalrslggr...gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrl 77 
                 G++hgG+ ++l+D + ++ l  + ++   + l v+++l++ ++rpv  g+e+++e++ +++g++ a+++  +r++ +++
  CCE28075.1  70 GNLHGGAAATLFDLCTTMPLVLISKPgfwQFLGVTRNLNVSYFRPVPKGEEVVIETEAVQVGKRLATLKGVMRRKRDGE 148
                 9*****************9999999999*******************************************99998876 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06     0.012      12      72 ..      73     144 ..      62     156 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-06
                 -HHHHHHHHHHHHHHT.....-S....SS....EEEEEEE-S---SE.EEEEEEEEEE--SS-EEEEEEEEET CS
      4HBT_3  12 yGGyvlAlalraaqrtv....pdp...rl....hslhvyFlrpgdag.pviyhvervrdGrsfstrtvelsqg 72 
                 +GG+++  +   + + +    ++p   ++    ++l v++ rp++ g +v++++e v  G++ +t+   ++++
  CCE28075.1  73 HGGAAAT-LFDLCTTMPlvliSKPgfwQFlgvtRNLNVSYFRPVPKGeEVVIETEAVQVGKRLATLKGVMRRK 144
                 6665433.3333333324566444334224557899*****************************99988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1260.28
//
Query:       CCE28076.1  [L=148]
Description: uncharacterized protein CPUR_01550 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.14   11.7   0.0       0.21   11.1   0.0    1.3  1  DAPG_hydrolase  DAPG hydrolase PhiG domain


Domain annotation for each model (and alignments):
>> DAPG_hydrolase  DAPG hydrolase PhiG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.1e-05      0.21      89     129 ..       3      43 ..       1      61 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.1e-05
  DAPG_hydrolase  89 erylgnthyvtEdvgeglekleirFvdpeelGldeeklkek 129
                     ++ +g++ ++ E +g ++++ +i+++++e+  l+++ l+++
      CCE28076.1   3 KKDYGESPRISERIGAQPLERSIKHEEVENAALSTSLLESS 43 
                     789****************************9999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1129.21
//
Query:       CCE28077.1  [L=180]
Description: uncharacterized protein CPUR_01551 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-09   35.5   0.6      4e-08   33.5   0.0    2.1  2  SAP30_Sin3_bdg  Sin3 binding region of histone deacetylase co
  ------ inclusion threshold ------
       0.13   12.0   0.0        0.3   10.8   0.0    1.5  1  DUF4051         Protein of unknown function (DUF4051)


Domain annotation for each model (and alignments):
>> SAP30_Sin3_bdg  Sin3 binding region of histone deacetylase complex subunit SAP30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.18   1.6e+03       6      16 ..      82      92 ..      79      96 .. 0.81
   2 !   33.5   0.0   4.4e-12     4e-08      19      54 .]     125     160 ..     120     160 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.18
  SAP30_Sin3_bdg  6 LrrYkrhykle 16
                    L  Y+r ++l+
      CCE28077.1 82 LHSYRREHQLS 92
                    778*****995 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 4.4e-12
  SAP30_Sin3_bdg  19 rpgsskeqLaeaVarHFkaqpvdEkevitsFlyavk 54 
                      +  sk+ La+aV++HF+ + ++E++vi+ F+y+++
      CCE28077.1 125 AQRQSKDALATAVRKHFNGLGIQENDVIVDFIYKIR 160
                     46789****************************986 PP

>> DUF4051  Protein of unknown function (DUF4051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.4e-05       0.3      18      44 ..     115     141 ..     112     145 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.4e-05
     DUF4051  18 yichlkRycrAfRqdRDAllEarnkly 44 
                 y  ++ R+ +A Rq +DAl  a  k +
  CCE28077.1 115 YSPTMIRKVQAQRQSKDALATAVRKHF 141
                 7779***************99977776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1461.47
//
Query:       CCE28078.1  [L=1963]
Description: uncharacterized protein CPUR_01552 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.7e-116  387.7   0.0   3.8e-116  387.2   0.0    1.2  1  IML1          Vacuolar membrane-associated protein Iml1
    3.7e-21   75.0   0.0    1.3e-20   73.2   0.0    2.0  1  DEP           Domain found in Dishevelled, Egl-10, and Plecks
  ------ inclusion threshold ------
      0.064   13.6   0.0       0.16   12.3   0.0    1.7  1  PEX-2N        Peroxisome biogenesis factor 1, N-terminal
        1.5    9.1  12.2        3.4    7.9  12.2    1.5  1  PTPRCAP       Protein tyrosine phosphatase receptor type C-as
        3.1    6.0  14.4        4.7    5.4  14.4    1.1  1  CDC45         CDC45-like protein
        3.3    6.4   9.3        5.8    5.6   9.3    1.3  1  NPR3          Nitrogen Permease regulator of amino acid trans
        6.3    5.3   5.3        9.7    4.6   5.3    1.1  1  DUF2151       Cell cycle and development regulator
        7.9    6.8  14.9         21    5.4  14.9    1.7  1  Vfa1          AAA-ATPase Vps4-associated protein 1
        9.7    5.9  10.6         18    5.1  10.6    1.3  1  RR_TM4-6      Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> IML1  Vacuolar membrane-associated protein Iml1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.2   0.0  1.9e-119  3.8e-116       1     286 []     196     506 ..     196     506 .. 0.93

  Alignments for each domain:
  == domain 1  score: 387.2 bits;  conditional E-value: 1.9e-119
        IML1   1 velvfkdqylsrsdmwrls.selvetcvykgqkisflgsiratvkeiykkgkkvksgyisekTkiifRSesarvvlliqlsrEmwdfeed..gellfek 96 
                 ve++fkdqylsr+dmwrl   e+++++vykgq i flg+i+a+v+++y++g++v+s++++++T++ifRSesar+vl+iq++rEmwdf+ +  ge++f+k
  CCE28078.1 196 VEISFKDQYLSRADMWRLVtGEMTQRTVYKGQFIFFLGTIKAQVTAVYVNGQTVQSAFFGKDTRPIFRSESARYVLFIQMAREMWDFDPEasGEITFDK 294
                 8*****************989******************************************************************88777******* PP

        IML1  97 vvngflpelFkkWkelktkHlvtivlfsrveydekeleeeaeealked........ekgrlykDfykvvvdeessedwkeileelkkefakfkrdille 187
                 vvngflp+lFk+W++lk+kHlv+iv+fsrveyd+  +++  +++  ++         ++r ykDfy+vvv+e++s++w++il++lkkef+ f+rdi+++
  CCE28078.1 295 VVNGFLPALFKRWAALKVKHLVSIVMFSRVEYDTGISADIVNSSSLNEyytglqqsGNRRPYKDFYRVVVSEMASDEWTTILNQLKKEFNYFRRDISMH 393
                 ********************************99555555544444444444442144555************************************** PP

        IML1 188 keekee..............kkkrlkgeistaaegniLeainlalnllekhyidrdLkrtgtsiivitpGtGvfevdkellkltterlldngiglDlvc 272
                 +++++               +++ +k+e s +++gn+Leain+a++ ++ ++idrdL+rtg+si+v+tpG G+fevd+e+l+ tte+l++ngig+Dlvc
  CCE28078.1 394 HQTANGlkhadsegengkdgASHPIKAESSLSVHGNVLEAINMAASRFSYDHIDRDLTRTGISIVVLTPGPGIFEVDYETLRRTTESLVGNGIGIDLVC 492
                 **7776999**********98999*************************************************************************** PP

        IML1 273 lskapLhsvPLfry 286
                 ++++pLhs+PLf+y
  CCE28078.1 493 MANMPLHSAPLFKY 506
                 *************9 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   6.5e-24   1.3e-20       1      72 []    1377    1518 ..    1377    1518 .. 0.99

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 6.5e-24
                  SS-SCEEECTTEEESSE-HHHHHHHHHHHHTS.SSSHHHHHHHHHHHH................................................. CS
         DEP    1 gvklkdrrkhlktypncftGseavdWLldnld.iedreeAvalgqlLl................................................. 47  
                  gv+l++rr+hl+ + ++f+Gs+++ WLldn++ + +reeA++lg+ L+                                                 
  CCE28078.1 1377 GVPLRNRRWHLRMHTSAFIGSDMTTWLLDNFEdLNSREEAEELGNILMvpndprdknkgkgkdkdknrekeeekdeskdqerdkakekdkdkekddg 1473
                  89*********************************************************************************************** PP

                  ......................HCTSCECSSSSHCC--SSSSS-EEE CS
         DEP   48 ......................dqgliehvedkhqeFrdskqafYqf 72  
                                        ++gl+ hv+++h+ Frd+ ++fYq+
  CCE28078.1 1474 egketakdnerekdgpeakpdkAKGLFIHVQKRHN-FRDG-NYFYQI 1518
                  ***********************************.****.9***97 PP

>> PEX-2N  Peroxisome biogenesis factor 1, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.3e-05      0.16      57      82 ..     159     184 ..     144     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.3e-05
                 -EEEEEHHHHHHTT--TT-EEEEEE- CS
      PEX-2N  57 neveinrqlgeklGlkdGeqvfLrpc 82 
                  +v ++r++++  Glk+G q+fLrp 
  CCE28078.1 159 VDVHVARHVADAFGLKKGSQAFLRPL 184
                 5799********************95 PP

>> PTPRCAP  Protein tyrosine phosphatase receptor type C-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  12.2    0.0017       3.4      28     102 ..    1397    1486 ..    1381    1506 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0017
     PTPRCAP   28 sppgrWlraraedgeedeeeEdqed.......................eedeeedsedleggeeeaesqeeeqaeseeageeqaleka......eea 95  
                  s  + Wl  + ed ++ ee E+  +                       e++ee              + e++++e+++a+e+++ +++      e a
  CCE28078.1 1397 SDMTTWLLDNFEDLNSREEAEELGNilmvpndprdknkgkgkdkdknrEKEEE--------------KDESKDQERDKAKEKDKDKEKddgegkETA 1479
                  45899999999999999999887779999877776555553333222211111..............112222222222222222222111111222 PP

     PTPRCAP   96 kdeekas 102 
                  kd+e+++
  CCE28078.1 1480 KDNEREK 1486
                  2222222 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  14.4    0.0023       4.7     107     205 ..    1404    1502 ..    1381    1521 .. 0.46

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0023
       CDC45  107 fDDgdieeeleeereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee.sddddersrkrrrsepsakklr 202 
                  +D+ + + + +ee e+  ++   +++ +++++ + +    ++++++e+e+e+de++d+e++k k+k+k++e+++ + ++  + ++r+++ p+ak  +
  CCE28078.1 1404 LDNFE-DLNSREEAEELGNILMVPNDPRDKNKGKGK----DKDKNREKEEEKDESKDQERDKAKEKDKDKEKDDgEGKETAKDNEREKDGPEAKPDK 1495
                  44444.333344444455555444443333222222....222222222233333333334444443333333334555555555665555555555 PP

       CDC45  203 rq....l 205 
                   +     
  CCE28078.1 1496 AKglfiH 1502
                  5444443 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   9.3    0.0029       5.8      19     112 ..    1382    1487 ..    1378    1511 .. 0.38

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0029
        NPR3   19 ntrFeltvDdlaFlGlPvhvdedgkwrkskkkk...............kkskrkrssrskekkskesskksesssksesseekksskeseeseekes 100 
                  n+r++l +   aF+G  +     +++++ ++++               + +++++ + + ++++ke++k++++++++++++e  ++k++e+++ + +
  CCE28078.1 1382 NRRWHLRMHTSAFIGSDMTTWLLDNFEDLNSREeaeelgnilmvpndpRDKNKGKGKDKDKNREKEEEKDESKDQERDKAKE--KDKDKEKDDGEGK 1476
                  5556666666666665555443333333322223345666666644322222222222222222222222222222222222..2222222222222 PP

        NPR3  101 neeeeeeededd 112 
                  ++ ++++e+e+d
  CCE28078.1 1477 ET-AKDNEREKD 1487
                  22.222222222 PP

>> DUF2151  Cell cycle and development regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   5.3    0.0049       9.7     560     625 ..    1429    1495 ..    1387    1523 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0049
     DUF2151  560 kekeee.dkkkvkrkfsdkedktekksakeeseksdeesseskkeeeaeresvkeaevdspesppak 625 
                   +++++ + k ++++++++e+k+e+k +++++ k +++++e+++ e +e ++++e+e d pe +p k
  CCE28078.1 1429 PRDKNKgKGKDKDKNREKEEEKDESKDQERDKAKEKDKDKEKDDGEGKETAKDNEREKDGPEAKPDK 1495
                  3333332223444445555555555544444433333334444444444455555555666665544 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  14.9     0.011        21      82     125 ..    1440    1486 ..    1408    1518 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.011
        Vfa1   82 kqkkkkekekkkkekd...kkdkdkkkekekdkkkekekeeekkkel 125 
                  k k+++++e+k+++kd   +k k+k+k+kekd+ + ke+ +++++e+
  CCE28078.1 1440 KDKNREKEEEKDESKDqerDKAKEKDKDKEKDDGEGKETAKDNEREK 1486
                  11111111111111111122222222222222222222211111111 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  10.6    0.0089        18      86     151 ..    1431    1488 ..    1401    1515 .. 0.38

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0089
                  XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXX CS
    RR_TM4-6   86 lkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkaksk 151 
                   k+k +   + +++++e+ee++ e+   +d+e+ +++ek+k ke+++ e +e  + ++    +k  
  CCE28078.1 1431 DKNKGK--GKDKDKNREKEEEKDES---KDQERDKAKEKDKDKEKDDGEGKETAKDNER---EKDG 1488
                  222222..22222222222222222...2222222222222222222222222222221...1111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1963 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1281  (0.0714485); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.40u 0.30s 00:00:01.70 Elapsed: 00:00:00.45
# Mc/sec: 13242.37
//
Query:       CCE28079.1  [L=160]
Description: related to zinc/cadmium resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-15   57.4   0.0    2.1e-15   57.0   0.0    1.1  1  Cation_efflux  Cation efflux family
    0.00071   18.8   0.7     0.0009   18.5   0.7    1.1  1  BPD_transp_2   Branched-chain amino acid transport system / p


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   2.3e-19   2.1e-15     125     199 .]      47     130 ..      40     130 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 2.3e-19
  Cation_efflux 125 rragrkl.........rsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslligliilysalkllkeslseLl 199
                    r+ g+k+         ++  l ++++hv gDa++++gv+++al+i+ ++ +s+++aDp+++++i+++i+ +al+l+k+s s+Ll
     CCE28079.1  47 RHYGHKHfavtpappgKDLGLVGVFVHVVGDAINNVGVIIAALIIWRTDSPSRYYADPAVGVFIAIMIFLTALPLTKSSGSILL 130
                    5566666777777777889999************************************************************97 PP

>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.7     1e-07    0.0009     209     265 ..      62     116 ..      53     119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1e-07
  BPD_transp_2 209 gvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgiptelarvllgalli 265
                   g  lg+ ++ + v+G a +++g++i+alii+  +s ++++   ++++ +++  ++++
    CCE28079.1  62 GKDLGLVGVFVHVVGDAINNVGVIIAALIIWRTDSPSRYYA--DPAVGVFIAIMIFL 116
                   5678899999*************************999998..34444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1176.20
//
Query:       CCE28080.1  [L=1200]
Description: uncharacterized protein CPUR_01554 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-40  138.0   0.4      5e-40  138.0   0.4    4.0  4  FNIP_N    Folliculin-interacting protein N-terminus


Domain annotation for each model (and alignments):
>> FNIP_N  Folliculin-interacting protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       0.6   1.1e+04      13      32 ..      39      59 ..      36      82 .. 0.59
   2 !  138.0   0.4   2.8e-44     5e-40       1     152 [.      91     225 ..      91     227 .. 0.82
   3 ?   -1.1   0.3      0.19   3.5e+03      52      97 ..     315     362 ..     291     380 .. 0.51
   4 ?   -1.2   1.6       0.2   3.5e+03      75      96 ..     681     711 ..     615     778 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.6
      FNIP_N 13 errgaslLf.DSkavkktpap 32
                + ++++lLf DS+a +++ + 
  CCE28080.1 39 DLHTRNLLFpDSQALSQNRND 59
                556789999999998877332 PP

  == domain 2  score: 138.0 bits;  conditional E-value: 2.8e-44
      FNIP_N   1 dvRviimQdalgerrgaslLfDSkavkktpappsps...kaskassrqssrhsrkasslsassrrsptsprksslsq..rplviq...sqprqgaFdrr 91 
                 dvRviimQdalg++ +aslLfDS+     p p   s   +++++++++                 +++++ + sl+q  rplviq   sqprqgaFdrr
  CCE28080.1  91 DVRVIIMQDALGPT-NASLLFDSH-----PGPDLVSasdRSPAYQDSK----------------ATMAAAGNDSLTQttRPLVIQgetSQPRQGAFDRR 167
                 8*************.*********.....5554333000222222221................122234456677777******************** PP

      FNIP_N  92 sslslsssrsesaqletekqraareyaeevntlgeciFGssa.msYkGsstKvHivpsdsrl 152
                 +s +   +rs+s+  et++q+aarey+ee++++++ciFG+s+ m+YkG+stKvH+vps+ + 
  CCE28080.1 168 TSNH---GRSQSY-SETDSQKAAREYREELAAFSSCIFGNSElMAYKGTSTKVHVVPSEFQA 225
                 **99...******.5*******************************************9875 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.19
      FNIP_N  52 kasslsassrrsptsprksslsqrplviq..sqprqga.Fdrrsslsls 97 
                 + s+ + ++rr+p+++    ++  p + +  s+ ++ + F r  s s +
  CCE28080.1 315 EESAAQPRQRRTPMYAVVLVVQIPPATFKnsSDLSTKSlFRR-ESGSYN 362
                 223333336777776554333334444446788888885555.443422 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.2
      FNIP_N  75 rplviq.......sqprqga.Fdrrssls.l 96 
                  p+ +q       +++r  + F    s+s +
  CCE28080.1 681 PPQLVQgdiegnvHHQRRASdFVSTHSMSlP 711
                 3444443333333222222224444444321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.21s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 9079.15
//
Query:       CCE28081.1  [L=911]
Description: related to putative RNA helicase involved in ribosome biogenesis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-49  165.7   0.0    2.4e-47  161.0   0.0    2.4  2  DEAD        DEAD/DEAH box helicase
    2.5e-25   89.0   0.2    8.9e-24   84.0   0.1    2.5  2  Helicase_C  Helicase conserved C-terminal domain
    1.6e-21   76.3   5.0    1.6e-21   76.3   5.0    2.2  2  DBP10CT     DBP10CT (NUC160) domain
    7.2e-08   32.6   0.0      2e-07   31.2   0.0    1.7  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.0   0.0   5.3e-51   2.4e-47       1     172 [.     106     270 ..     106     274 .. 0.96
   2 ?    2.0   0.0     0.034   1.5e+02      46     104 ..     354     412 ..     335     420 .. 0.75

  Alignments for each domain:
  == domain 1  score: 161.0 bits;  conditional E-value: 5.3e-51
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 t+iQ+++ipl+l+ +dv++ a+TGsGKT+af+ip+++++  +  + g +ali++P+reLa qtl+ +k+f   +dl+++l++gg++ ++q s + +++d
  CCE28081.1 106 TPIQRKTIPLLLDRKDVVGMARTGSGKTGAFVIPMIEKLRAHSARFGSRALILSPSRELAIQTLKVVKEFARGTDLKAVLLVGGDSLEEQFSYMAANPD 204
                 89*************************************88899999***********************************************99*** PP

                 EEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 i+++tpgr+++l  + +l+ls+++++V+DEadrl ++gf  ++ +il++l       + +rq++++SATlp +
  CCE28081.1 205 IIIATPGRFLHLKVEMSLDLSSIQYVVFDEADRLFEMGFAAQLTEILHAL-------PPSRQTLLFSATLPAS 270
                 ***********998899*********************************.......67889********943 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.034
                 TS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
        DEAD  46 tgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdivvgt 104
                 t++ +++ + t+  +e ++n l++ +  ++  v   + ++a+r+q++++++g ++i+v t
  CCE28081.1 354 TEKSTIVFTATKHHVEYIANVLQSAGFAVS-HVYGSLDQTARRNQVEDFRRGrTNILVVT 412
                 456677777777777777777777777544.44455668999999999987779999988 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.047   2.1e+02      13      92 ..     149     234 ..     137     253 .. 0.65
   2 !   84.0   0.1     2e-27   8.9e-24      16     111 .]     355     450 ..     350     450 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.047
                 TTTTSEEEEEESSHH.HHHH...HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGG......GTSSSTSTTESEEEESS CS
  Helicase_C  13 eeeggkilifvntid.rlek...vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdv......aerGidipkvnlVinfd 92 
                  + g+++li +++++  ++    vk + +  ++k++ l g  + +e    ++ + + + d++iat        +e+++d+ ++++V++ +
  CCE28081.1 149 ARFGSRALILSPSRElAIQTlkvVKEFARGTDLKAVLLVGGDSLEE---QFSYM-AANPDIIIATPGrflhlkVEMSLDLSSIQYVVFDE 234
                 5567777777777776333322244443333677777777433333...33333.44567999998888888899999999999999755 PP

  == domain 2  score: 84.0 bits;  conditional E-value: 2e-27
                 TSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  16 ggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                 ++ +++f+ t+ ++e +  +l++ g+ v  ++g+l q  r+  +e+f++g++++L+ tdva+rGidip + +Vin+d+p +++ +++r+GRt+Rag
  CCE28081.1 355 EKSTIVFTATKHHVEYIANVLQSAGFAVSHVYGSLDQTARRNQVEDFRRGRTNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAG 450
                 6889**********7744445777**********************************************************************97 PP

>> DBP10CT  DBP10CT (NUC160) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       2.7   1.2e+04      36      48 ..     338     350 ..     331     358 .. 0.55
   2 !   76.3   5.0   3.5e-25   1.6e-21       1      64 [.     742     807 ..     742     808 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.7
     DBP10CT  36 edgskkirtESGv 48 
                 + +++k   ESG+
  CCE28081.1 338 ASKKRKRGVESGA 350
                 2223455567775 PP

  == domain 2  score: 76.3 bits;  conditional E-value: 3.5e-25
     DBP10CT   1 DLtgDeaeelkkkkqakk..lrWDkKkkkyVkrtnkdedgsk...kirtESGvkiaasfksgrYdkWkk 64 
                 D t+De+ ++ +++q+ +  +rWD K+kkyV+r+n dedgsk   +i +ESGvkiaa+f+sgrYdkWk+
  CCE28081.1 742 DFTNDET-AK-SFGQPVRskMRWDAKSKKYVSRDN-DEDGSKgskMITGESGVKIAATFQSGRYDKWKR 807
                 899***9.44.489999889**************9.888854444**********************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   4.4e-11     2e-07      31     169 ..     126     267 ..      92     269 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 4.4e-11
                 ESTTSTHHHHH.HHHHHHH-S.......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH....... CS
      ResIII  31 maTGtGKTlva.aklierllkkgkee..kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadseeeeees 125
                 + TG+GKT    + +ie+l+ +  +   ++l+l p+++l  qtl+ +k+f+  ++ ++   v gd+ ++ +++ + n +i+++t  ++   +      +
  CCE28081.1 126 ARTGSGKTGAFvIPMIEKLRAHSARFgsRALILSPSRELAIQTLKVVKEFARGTDLKAVLLVGGDSLEEqFSYMAANPDIIIATPGRFLHLK-----VE 219
                 56******99978899988876665588***************************999999****999999999**************9999.....99 PP

                 .HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS- CS
      ResIII 126 eellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTATp 169
                  +l+ ++++++++DEa rl ++   ++ +eil ++++    l ++AT+
  CCE28081.1 220 MSLDLSSIQYVVFDEADRLFEMgfaAQLTEILHALPPsRQTLLFSATL 267
                 99999****************96666888889998764667999**97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 6004.78
//
Query:       CCE28082.1  [L=215]
Description: uncharacterized protein CPUR_01556 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-14   52.0   3.9    2.1e-13   50.1   0.4    2.7  3  DnaJ        DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.65   1.2e+04       9      22 ..      24      37 ..      22      37 .. 0.75
   2 !   50.1   0.4   1.2e-17   2.1e-13       1      63 []      39     100 ..      39     100 .. 0.97
   3 ?    2.1   0.1     0.012   2.1e+02      47      60 ..     134     147 ..     120     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.65
                STTG-HHHHHHHHH CS
        DnaJ  9 skdasedeIkkaYr 22
                +kda+ d I +a+r
  CCE28082.1 24 DKDAEIDRILRAFR 37
                57788888888887 PP

  == domain 2  score: 50.1 bits;  conditional E-value: 1.2e-17
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 d Y++L + +   e++Ik+ Yrk++l +HPDk  k+p+a ++F ++++A   L+d++ R++ D
  CCE28082.1  39 DAYAVLDLLPGVPESDIKATYRKKSLLIHPDKT-KNPQAPDAFDRLKKAQTELMDEKHRARLD 100
                 68*******************************.*************************9876 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.012
                 HHHHHHHTSHHHHH CS
        DnaJ  47 neAyevLsdpekRk 60 
                 ++A evL d+e R+
  CCE28082.1 134 EKAKEVLIDNEHRR 147
                 5899*****99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1825  (0.10179); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1554.64
//
Query:       CCE28083.1  [L=553]
Description: related to heat shock protein MDJ1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-35  122.5   0.0    2.2e-35  121.9   0.0    1.3  1  DnaJ_C         DnaJ C terminal domain
    9.2e-24   83.4   4.0    9.2e-24   83.4   4.0    1.7  2  DnaJ           DnaJ domain
    1.4e-09   38.2  19.3    1.4e-09   38.2  19.3    2.0  2  DnaJ_CXXCXGXG  DnaJ central domain
  ------ inclusion threshold ------
       0.41   10.6  17.6      0.087   12.8   3.5    3.0  2  Anti-TRAP      Tryptophan RNA-binding attenuator protein inhi
        3.4    7.7   9.7        0.3   11.1   1.6    2.6  2  Cytochrome_C7  Cytochrome c7 and related cytochrome c


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.0   6.1e-39   2.2e-35       1     148 []     212     438 ..     212     438 .. 0.96

  Alignments for each domain:
  == domain 1  score: 121.9 bits;  conditional E-value: 6.1e-39
                 EEEEEEE-HHHHHH-.EEE.EEEE........................................................................TEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................................xxxxxxx RF
      DnaJ_C   1 ieveleisleelykGktkkikikrnvi.................................................................kkekktl 34 
                 +e+  +i++ e++kG+ ++i+++  ++                                                                 ++++k++
  CCE28083.1 212 VETHASITFMEAAKGTRRTINFTPLTTcgtcsgsglktgakrstcqschgtgtrihvvqggfqmaaacnacdgtgstvprgsdcrtcsgngvVRQRKSI 310
                 577899****************99988****************************************************************9888889* PP

                 EEEE-TT--TT-EEEETT-SS.......SS.....S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-EEEEEE...--TT-EE CS
                 xxxxxxxxxxxxxxxxxxxxx.......xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx RF
      DnaJ_C  35 evkipaGikdgqkirlegeGd.......eeg...gepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgkvklki...tqpgevl 120
                  v+ipaGi+dg+++r++g Gd       +++     pGDl+v ++v+++p+F+r+g++++++++i+l++allGg++++ptldg+vk+ki   t +g+++
  CCE28083.1 311 PVDIPAGIEDGMRLRVDGAGDaavtgksANPnarSVPGDLYVFVRVAKDPRFSRDGSNVLHTATIPLTTALLGGEVKIPTLDGSVKVKIatgTGSGDKI 409
                 *********************999887733367899************************999***************************9******** PP

                 EETT-S-EET....TEE--EEEEEEEE-- CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
      DnaJ_C 121 rikgkGmpklk.kpgkrGdlyvevkvefP 148
                 ++ g+Gm+kl  ++ ++Gdl ve++v++P
  CCE28083.1 410 TLTGMGMKKLGsRRAGFGDLRVEFRVDMP 438
                 **********988999***********99 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   4.0   2.6e-27   9.2e-24       1      63 []      78     139 ..      78     139 .. 0.99
   2 ?   -2.5   0.0       1.6   5.7e+03      17      37 ..     506     526 ..     497     533 .. 0.68

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 2.6e-27
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 d+Y+ Lgvsk+as++eIkk+Y+ la+kyHPD n kdp+a++kF  i+ Aye+Lsdp+k+kqYD
  CCE28083.1  78 DPYQALGVSKSASAAEIKKSYYGLAKKYHPDTN-KDPDAKDKFADIQSAYEILSDPQKKKQYD 139
                 78*******************************.****************************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHSTTTSCCHH CS
        DnaJ  17 IkkaYrklalkyHPDknpkdp 37 
                 +++ +r+l  k  P+ n++++
  CCE28083.1 506 LRSIWRNLTDKSAPETNAQEN 526
                 677789999999999885554 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.5       1.7     6e+03       6      23 ..      35      56 ..      29      73 .. 0.53
   2 !   38.2  19.3   3.9e-13   1.4e-09       1      67 []     239     302 ..     239     302 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.7
  DnaJ_CXXCXGXG  6 Gsgakkgk...kktCkt.CkGs 23
                   G+ga+ ++   +  C++ CkG 
     CCE28083.1 35 GNGAQLHTstvRIGCRDgCKGA 56
                   4444322222233354336665 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 3.9e-13
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgk.kktCktCkGsG.vvreeqktlgpfvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C +C+Gsg k+g+ ++tC++C+G+G ++++ q   g f  q+   C++C+GtG+++ + + C++C+G+g
     CCE28083.1 239 CGTCSGSGLKTGAkRSTCQSCHGTGtRIHVVQ---GGF--QMAAACNACDGTGSTVPRGSDCRTCSGNG 302
                    9********99554999********3333333...223..46789**********************86 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   6.4     0.054   1.9e+02      11      40 ..     237     263 ..     235     272 .. 0.84
   2 ?   12.8   3.5   2.4e-05     0.087      11      42 ..     277     304 ..     269     308 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.054
                 EE-TTTTTTSEETTE......E-TTTTTSS CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkg 40 
                 t+C +C gsG   ++ +r    C  C G g
  CCE28083.1 237 TTCGTCSGSGLKTGA-KR--STCQSCHGTG 263
                 78**********999.44..3799999987 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.4e-05
                 EE-TTTTTTSEETTE......E-TTTTTSSEE CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkgli 42 
                  +C+aC+g+G   p     + +C  CsG+g++
  CCE28083.1 277 AACNACDGTGSTVPR----GSDCRTCSGNGVV 304
                 68***********99....88*********97 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.6   8.3e-05       0.3      35      72 ..     223     260 ..     209     261 .. 0.77
   2 ?    4.1   7.2     0.013        46      12      71 ..     252     298 ..     245     300 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.3e-05
  Cytochrome_C7  35 mekgkskkaeves.ltCgaCHdgknafsvakkaeCakCH 72 
                     +kg+ ++++++  +tCg+C  +  +   ak+ +C++CH
     CCE28083.1 223 AAKGTRRTINFTPlTTCGTCSGSGLKT-GAKRSTCQSCH 260
                    3567777778888788****9999998.5799******* PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.013
  Cytochrome_C7  12 tgykCtdCHsklfeskakkkmaemekgkskkaevesltCgaCHdgknafsvakkaeCakC 71 
                    +  +C++CH++ ++ +++++   +++           +C aC     +    +  +C++C
     CCE28083.1 252 KRSTCQSCHGTGTRIHVVQG--GFQMA---------AACNACDGTGSTV--PRGSDCRTC 298
                    45789999988843333222..22222.........3488885555444..568888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3931.20
//
Query:       CCE28084.1  [L=60]
Description: uncharacterized protein CPUR_01558 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 470.72
//
Query:       CCE28085.1  [L=602]
Description: probable Ca2+-transport (H+/Ca2+ exchange) protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-47  160.6  31.7    2.3e-25   89.3  12.4    2.1  2  Na_Ca_ex   Sodium/calcium exchanger protein
  ------ inclusion threshold ------
        1.7    8.2   8.8       0.16   11.6   3.6    2.0  2  CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4  11.2   1.2e-25   1.1e-21       3     150 ..     208     361 ..     206     362 .. 0.89
   2 !   89.3  12.4   2.5e-29   2.3e-25       3     150 ..     443     586 ..     441     587 .. 0.92

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 1.2e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkl 101
                 +++f++ +++i++la++l+ ++ee+a     +g++lG +++A+++++ Eli++iia++ g+v ++  +++Gs++ nlllv+G+++++g+l ++++ ++ 
  CCE28085.1 208 IAVFVVNFIAIIPLAAMLSYATEEVA---LRTGETLGGLINATFGNAVELIVAIIALADGKVAIVQTSLIGSILSNLLLVMGFCFFFGGLRRQEQHFNH 303
                 689***********************...78999*******************************************************6666655444 PP

                 HHHHHHHHHHHHHHHHHHTCHHHHH...........HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 102 dlgllllvallllllvlllllplfv...........pgrltvleglvllllYalylvlsl 150
                 ++ +   ++ll+l+++++ ++p  +             ++++ ++++ll++Y +yl+++l
  CCE28085.1 304 TV-AQTAASLLALAAASV-IVPSVFevaapnvgqddIAKMSRGTSVILLIVYSAYLFFQL 361
                 44.666777777666666.55776699*********9*********************98 PP

  == domain 2  score: 89.3 bits;  conditional E-value: 2.5e-29
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkl 101
                 ++++ +s+++i+++a+++v+s++e++ks g++++++Gl+ll++++++ E+++++++a+++++dlaig ++Gs +++ l+ i+l+++ig+    +e+++l
  CCE28085.1 443 LAALTVSTVIIAFCAECMVDSIDEVTKSGGLKEEFVGLILLPIVGNAAEHATAVTVAIKDKMDLAIGVAVGSSMQVALFLIPLMVIIGW-GMGNENMDL 540
                 678999*********************************************************************************99.8888999** PP

                 HHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 102 dlgllllvallllllvlllllplfvpgrltvleglvllllYalylvlsl 150
                 ++ +++++++++ +l+   +l+   +g+  +leg++l+ lY +++v s+
  CCE28085.1 541 SFDMFQVAVMFVAVLLTN-YLIG--DGKSHWLEGFLLICLYSIIAVCSF 586
                 **8888888877665555.6555..6*****************999876 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.6   1.7e-05      0.16     117     197 .]     272     357 ..     244     357 .. 0.79
   2 ?   -3.4   0.2      0.71   6.4e+03     152     166 ..     506     520 ..     495     533 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.7e-05
   CPP1-like 117 s.....vpalllalglgasiyflnrKekklgravlltlvgLvvGlllGsllasllqvdvalsglsseellvslvtlvllwlvslfL 197
                 s       +lll++g+++ +  l+r+e+++  +v+ t ++L++ ++++ ++ s+++v+++  g    ++++  ++++ll + s++L
  CCE28085.1 272 SligsiLSNLLLVMGFCFFFGGLRRQEQHFNHTVAQTAASLLALAAASVIVPSVFEVAAPNVGQDDIAKMSRGTSVILLIVYSAYL 357
                 134555789********************************999999999999998886666677788899999999999999987 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.71
   CPP1-like 152 LvvGlllGsllasll 166
                 L++G+++Gs +++ l
  CCE28085.1 506 LAIGVAVGSSMQVAL 520
                 788888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4299.20
//
Query:       CCE28086.1  [L=1736]
Description: related to sister chromatid cohesion protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-51  174.7   3.5    4.6e-49  167.0   1.3    3.3  2  Nipped-B_C    Sister chromatid cohesion C-terminus
    3.9e-07   30.2   2.1    9.1e-06   25.9   0.7    2.9  2  Cohesin_HEAT  HEAT repeat associated with sister chromatid co
    5.6e-05   23.2   0.7     0.0033   17.5   0.0    3.5  3  Cnd1          non-SMC mitotic condensation complex subunit 1
    5.8e-05   23.0   5.2      0.063   13.6   0.1    5.4  5  HEAT          HEAT repeat
  ------ inclusion threshold ------
      0.054   12.8   0.1       0.53    9.5   0.0    2.2  2  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil
        0.1   13.0   0.1         60    4.1   0.0    3.7  3  RasGEF_N_2    Rapamycin-insensitive companion of mTOR RasGEF_
       0.18   11.8   4.5       0.46   10.5   4.5    1.7  1  AT_hook       AT hook motif


Domain annotation for each model (and alignments):
>> Nipped-B_C  Sister chromatid cohesion C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0037       9.5      10      37 ..     854     881 ..     850     920 .. 0.78
   2 !  167.0   1.3   1.8e-52   4.6e-49       1     190 []    1312    1498 ..    1312    1498 .. 0.96

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0037
                 HHHHHHHTSS-HHHHHHHHHHHHHHHHH CS
  Nipped-B_C  10 kdilecalspdsqvrlaAlevvslilrq 37 
                 + il+c+ ++++qvr +Al ++ +++  
  CCE28086.1 854 QLILDCCSDSSTQVRDSALGLLGSCISM 881
                 569*******************998865 PP

  == domain 2  score: 167.0 bits;  conditional E-value: 1.8e-52
                  HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHT-S-GGGTHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHTHHHHHHHHHHHHHH. CS
  Nipped-B_C    1 asavvqrYlkdilecalspdsqvrlaAlevvslilrqGLvhPvqcvptLialetdpdesirsrAdkllqeleekyegfleskalqgirlafqlqkki 97  
                  asa +qr+lkdi+++a+s++++++++A+ev+ +i+rqGL+hP+++  tLi+let+++++i+++A+  +++l+ek+e++le+++++++++af++q++i
  CCE28086.1 1312 ASATTQRFLKDITRIAVSSQDEHAFLAMEVLGSINRQGLTHPKETGVTLITLETSANRKIAELAYLEHRSLHEKHETVLEREYVKAVQSAFNYQRDI 1408
                  6899********************************************************************************************* PP

                  ...H-TTTG.......GG---HHHHHHHHH.--SHHHHHHHHHHHHHHH.H...HTSSTT--HHHHHHHHHHHHHHHHCS--EEHHHHHHHHHHH.. CS
  Nipped-B_C   98 a.sssgaklrrsasetesptallsslysll.rsnkqsrrkflsslvklfdf...esesdaesekshlsfllfladnLahfpYqtqdEvlyvihhidr 189 
                  + +s+ga+        ++++++l+ l+++l  s+  +r++fl++lv ++df   ++ + +++ + h+++ +f+++nLa+f+Yqt+ E+ ++++ i++
  CCE28086.1 1409 VkDSHGATV-------DPFQSKLQLLMEVLkISKMTNRQRFLEKLVGQVDFdlaKL-DATQDLPPHVDYSRFITENLAFFEYQTVGELQTTVNKIEK 1497
                  *99999998.......9*************999****************9999644.57799*********************************98 PP

                  . CS
  Nipped-B_C  190 i 190 
                  i
  CCE28086.1 1498 I 1498
                  6 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.7   3.6e-09   9.1e-06       1      41 [.     833     874 ..     833     875 .. 0.93
   2 ?    2.4   0.0     0.081   2.1e+02      17      38 ..     926     947 ..     918     950 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.6e-09
                   HHHHHHHHH-GGGGGSH.HHHHHHHHHHHSS-HHHHHHHHHH CS
  Cohesin_HEAT   1 kalsslvekdpsiLsap.evldtiarrltDsspsVRdAaLel 41 
                   +++++++e dpsiL+ + +v++ i  + +Dss++VRd+aL l
    CCE28086.1 833 RSVNQVLETDPSILDGDsSVIQLILDCCSDSSTQVRDSALGL 874
                   7899**********9888*********************955 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.081
                   HHHHHHHHHHHHSS-HHHHHHH CS
  Cohesin_HEAT  17 pevldtiarrltDsspsVRdAa 38 
                   + + + + rr  D++ sVRd a
    CCE28086.1 926 SAIANGLLRRIQDPDESVRDLA 947
                   56778899***********976 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.33   8.5e+02     107     154 ..     308     357 ..     274     362 .. 0.80
   2 !    5.6   0.1     0.006        15      33     101 ..     823     894 ..     811     899 .. 0.66
   3 !   17.5   0.0   1.3e-06    0.0033       2     131 ..     867    1003 ..     866    1010 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.33
        Cnd1 107 alne..csewgqitilefLlsyipkdkqeaeslveklcprlqhansavvl 154
                 +lne     ++ +t l++L+ + ++++   es++ k ++ +++++++vv+
  CCE28086.1 308 QLNEvdTALKSARTCLRILSGCREDKQLYSESIITKSVNIFKAVTEDVVM 357
                 44442245577889999**************************9999997 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.006
        Cnd1  33 edpyVRktaaivvakLilndmvkekg...flselaklleDenprVvanalaalteiseksenaiynllpdii 101
                 ++++VR   +  v ++++ d  +  g   +++ ++++ +D++++V+++al +l  + ++ + +  +l+  ii
  CCE28086.1 823 DQATVRSKSLRSVNQVLETDPSILDGdssVIQLILDCCSDSSTQVRDSALGLLGSCISMRPVLEASLTARII 894
                 567788888888888866663332222358888888888888888888888887777766555455555554 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 1.3e-06
        Cnd1    2 iRalairtlg.cirvpnlvey.lvepLrkrLkDedpyVRktaaivvakLilndmvkekg..flselaklleDenprVvanalaalteisek...sen 91  
                  +R  a+  lg ci ++ ++e+ l+ ++  r++D    VRk a+ +   ++l++  k     + + l++ ++D++++V+++a+ +++e++     + n
  CCE28086.1  867 VRDSALGLLGsCISMRPVLEAsLTARIIDRFQDAGVGVRKRAMKLARDIYLRNQNKGLRsaIANGLLRRIQDPDESVRDLARQIIEEVWFApfyA-N 962 
                  78889999999****99999637889***********************7777766433349999************************887742.4 PP

        Cnd1   92 aiynllpdiisklsd.alnecsewgqitilefLlsyipkdk 131 
                  +   ++ +++s  ++   ++++  + ++il+ +++ i k +
  CCE28086.1  963 ENTASFETSLSEHVAlIVHTVKGGTMTEILDKVFQAILKPQ 1003
                  44444444444333224456777777888887777665554 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.07   1.8e+02       1      29 [.     812     840 ..     812     841 .. 0.91
   2 !   13.6   0.1   2.4e-05     0.063       2      27 ..     853     878 ..     852     881 .. 0.90
   3 ?    3.8   0.0     0.034        87       4      20 ..     931     947 ..     928     953 .. 0.87
   4 ?   -1.7   0.0         2     5e+03      15      29 ..    1106    1120 ..    1105    1121 .. 0.89
   5 ?   -1.3   0.1       1.5   3.7e+03      17      29 ..    1227    1239 ..    1225    1240 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.07
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 +l++ll  + ++ + VR+ +++++ +++e
  CCE28086.1 812 ILNILLGSMASDQATVRSKSLRSVNQVLE 840
                 7999******************9998876 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgal 27 
                 + l+l ++sD+s +VR++A+  Lg  
  CCE28086.1 853 IQLILDCCSDSSTQVRDSALGLLGSC 878
                 789*******************9976 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.034
                 HHHHHHT-SSHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaA 20 
                  ll+ ++Dp+ +VR+ A
  CCE28086.1 931 GLLRRIQDPDESVRDLA 947
                 58999*********987 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2
                  HHHHHHHHHHHHHHH CS
        HEAT   15 eVReaAakaLgalae 29  
                  eVR   +k +g++++
  CCE28086.1 1106 EVRLQLLKGIGKISS 1120
                  8**********9986 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 1.5
                  HHHHHHHHHHHHH CS
        HEAT   17 ReaAakaLgalae 29  
                  R+a+++a+g +++
  CCE28086.1 1227 RKASIEAIGLVCQ 1239
                  9********9997 PP

>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.14   3.6e+02      66     116 ..     328     378 ..     326     413 .. 0.74
   2 ?    9.5   0.0   0.00021      0.53      86     131 ..    1643    1689 ..    1617    1699 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.14
                   SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEEEEEE--GGGS..SCSTCEC CS
  Oxidored_FMN  66 gfdnapgiwdeeqieewrklteavhengskvvvqlwhlGreakseyladqe 116
                   g +++ ++++e+ i +  ++++av e   +  v+l + G  +   +l +++
    CCE28086.1 328 GCREDKQLYSESIITKSVNIFKAVTEDVVMPLVELRNSGTSSSLFKLMQKQ 378
                   5678889********************************998754444444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00021
                    HHHHHHTT-EEEEEEE--GGGS...SCSTCEC..SS.ESSSSSTTT- CS
  Oxidored_FMN   86 teavhengskvvvqlwhlGreak.seyladqevdspsdpvaldaqee 131 
                     + + ++++k++v+l++  +e k ++ ++d ++++ps p++++++ee
    CCE28086.1 1643 NQTIMAQKCKAFVELMNVDKEFKvADEDEDLDMEGPSTPSDIEDDEE 1689
                    3779*******************999**************9999865 PP

>> RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.4   3.6e+03       7      45 ..     302     343 ..     295     367 .. 0.74
   2 ?    4.1   0.0     0.024        60       6      42 ..     852     888 ..     849     914 .. 0.86
   3 ?    3.8   0.0     0.029        75      10      50 ..     932     973 ..     928     989 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
  RasGEF_N_2   7 iellvnqL..ydqsrevvaaaleiLeeacddk.eslevlvel 45 
                 +++ ++qL   d + + +++ l+iL  + +dk  + e+++  
  CCE28086.1 302 VQVWLQQLneVDTALKSARTCLRILSGCREDKqLYSESIITK 343
                 677788885556677778888888888877776777777664 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.024
  RasGEF_N_2   6 giellvnqLydqsrevvaaaleiLeeacddkeslevl 42 
                 +i+l+++ ++d+s++v++ al +L ++++ +  le+ 
  CCE28086.1 852 VIQLILDCCSDSSTQVRDSALGLLGSCISMRPVLEAS 888
                 69**********************9998877666665 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.029
  RasGEF_N_2  10 lvnqLydqsrevvaaaleiLeeacddk.eslevlvelkpslq 50 
                 l+++++d++++v++ a +i+ee+   +    e  +++++sl+
  CCE28086.1 932 LLRRIQDPDESVRDLARQIIEEVWFAPfYANENTASFETSLS 973
                 7899******************98877777777788877774 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.5   0.00018      0.46       1      12 [.    1717    1728 ..    1717    1729 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
     AT_hook    1 kRkRGRPrKaat 12  
                  +RkRGRPrK+ +
  CCE28086.1 1717 PRKRGRPRKHVN 1728
                  7********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.44
# Mc/sec: 11790.26
//
Query:       CCE28087.1  [L=322]
Description: uncharacterized protein CPUR_01561 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-29  100.4   6.2    2.5e-13   50.2   0.1    4.2  4  HEAT_2    HEAT repeats
      3e-23   80.1   3.7    0.00081   19.8   0.0    6.9  7  HEAT_PBS  PBS lyase HEAT-like repeat
    5.3e-07   29.4   7.5       0.48   10.8   0.0    6.1  8  HEAT      HEAT repeat
     0.0067   16.5   0.0        1.4    8.9   0.0    3.3  3  Cnd1      non-SMC mitotic condensation complex subunit 1
  ------ inclusion threshold ------
      0.012   16.1  10.7        2.1    9.0   0.0    5.2  4  HEAT_EZ   HEAT-like repeat
       0.16   12.7   1.9         20    6.2   0.0    3.7  3  TPR_4     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.82   2.4e+03      62      87 ..       4      30 ..       2      31 .. 0.60
   2 !   46.9   0.5   9.2e-16   2.8e-12       6      79 ..      50     125 ..      46     135 .. 0.88
   3 ?    3.0   0.0     0.045   1.4e+02      10      39 ..     180     214 ..     171     216 .. 0.65
   4 !   50.2   0.1   8.5e-17   2.5e-13       3      87 ..     213     298 ..     211     299 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.82
      HEAT_2 62 ealpaLkelldddd.ddvvReaAaeaL 87
                +++++L+e+l +++    vR +A+ +L
  CCE28087.1  4 ATIQSLRESLCSEStPLPVRFRALFSL 30
                567888886544441567777776665 PP

  == domain 2  score: 46.9 bits;  conditional E-value: 9.2e-16
      HEAT_2   6 qalendpdpevrraairaLgrignpealpaLvelled..edpavRraaaeaLgaigdpealpaLkellddddddvv 79 
                 +a+  +p+  ++++ + +Lg+ +++ a++ L+++l+d  edp+ R++aaeaLga+gd e+l++Lk+  d++ ++vv
  CCE28087.1  50 AAAFASPSALLKHELAYCLGQTKHEAAVKPLRNVLSDlaEDPMCRHEAAEALGALGDTESLDLLKHFRDREGEEVV 125
                 4444799****************************9999**************************98888777766 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.045
      HEAT_2  10 ndpdpe.vrraairaLgrignp....ealpaLvel 39 
                 + + p   r++a  aL ++++p    +a+pa++ l
  CCE28087.1 180 DTAQPLfMRYRAMFALRDLASPpsrpTAVPAVLAL 214
                 4444442699999****999984555666666665 PP

  == domain 4  score: 50.2 bits;  conditional E-value: 8.5e-17
      HEAT_2   3 aLlqalendpdpevrraairaLgrignpealpaLvelled..edpavRraaaeaLgaigdpealpaLkellddddddvvReaAaeaL 87 
                 aL + l  d++   r++++ + g++ +p ++paL+e+l++  e ++vR++aaeaLg +g++e ++  ++++++d++ vvRe+++ aL
  CCE28087.1 213 ALAKGL-ADSSALFRHEIAFVFGQLSHPASIPALTEALSNveEASMVRHEAAEALGSLGEEEGVEEILKRFLNDKEKVVRESVIVAL 298
                 577889.8******************************6553789***************999999999999**********99887 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2      0.11   3.2e+02       1      25 [.      22      53 ..      22      55 .. 0.80
   2 !   11.1   0.0   0.00018      0.54       3      27 .]      62      86 ..      60      86 .. 0.93
   3 !   19.8   0.0   2.7e-07   0.00081       2      23 ..      94     115 ..      94     116 .. 0.95
   4 ?   -2.9   0.0         6   1.8e+04       8      16 ..     133     141 ..     132     150 .. 0.76
   5 !    9.0   0.1   0.00087       2.6       2      24 ..     188     214 ..     187     220 .. 0.81
   6 !   14.7   0.0   1.2e-05     0.036       2      26 ..     226     250 ..     225     251 .. 0.95
   7 !   17.2   0.0   1.9e-06    0.0058       1      23 [.     258     280 ..     258     284 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.11
                HHHHHHHHHHHCTS.......GGGHHHHHHHC CS
    HEAT_PBS  1 vRraAakaLgqlgd.......eeaipaLleaL 25
                vR +A+++L  + +        +ai+a+ +a 
  CCE28087.1 22 VRFRALFSLKHVATtgdpataVAAIEAIAAAF 53
                78888888888888888988888998888875 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00018
                HHHHHHHHHCTSGGGHHHHHHHCTC CS
    HEAT_PBS  3 raAakaLgqlgdeeaipaLleaLqd 27
                ++ a+ Lgq ++e+a+ +L+++L d
  CCE28087.1 62 HELAYCLGQTKHEAAVKPLRNVLSD 86
                789********************87 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 2.7e-07
                 HHHHHHHHHHCTSGGGHHHHHH CS
    HEAT_PBS   2 RraAakaLgqlgdeeaipaLle 23 
                 R++Aa+aLg+lgd+e++++L+ 
  CCE28087.1  94 RHEAAEALGALGDTESLDLLKH 115
                 9*******************85 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 6
                 HHHHCTSGG CS
    HEAT_PBS   8 aLgqlgdee 16 
                 a++++ +e 
  CCE28087.1 133 AIARIEWEN 141
                 789999954 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.00087
                 HHHHHHHHHHCTS....GGGHHHHHHH CS
    HEAT_PBS   2 RraAakaLgqlgd....eeaipaLlea 24 
                 R++A++aL  l +    + a+pa l++
  CCE28087.1 188 RYRAMFALRDLASppsrPTAVPAVLAL 214
                 9************99997777776665 PP

  == domain 6  score: 14.7 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHCTSGGGHHHHHHHCT CS
    HEAT_PBS   2 RraAakaLgqlgdeeaipaLleaLq 26 
                 R++ a+  gql ++++ipaL eaL 
  CCE28087.1 226 RHEIAFVFGQLSHPASIPALTEALS 250
                 99*********************97 PP

  == domain 7  score: 17.2 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHHHCTSGGGHHHHHH CS
    HEAT_PBS   1 vRraAakaLgqlgdeeaipaLle 23 
                 vR++Aa+aLg lg ee ++ +l+
  CCE28087.1 258 VRHEAAEALGSLGEEEGVEEILK 280
                 9*****************99876 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.49   1.5e+03      11      28 ..      16      34 ..       6      36 .. 0.70
   2 ?   -2.4   0.1       2.9   8.8e+03      20      28 ..      42      50 ..      40      55 .. 0.67
   3 ?   -2.2   0.1       2.4   7.3e+03       6      26 ..      50      70 ..      45      70 .. 0.63
   4 !    8.8   0.0   0.00069       2.1       6      28 ..      81     105 ..      77     107 .. 0.85
   5 ?   -2.1   0.0       2.3   6.8e+03      17      29 ..     188     200 ..     186     200 .. 0.86
   6 ?    1.6   0.0      0.15   4.3e+02       5      28 ..     214     237 ..     212     238 .. 0.91
   7 !   10.8   0.0   0.00016      0.48       2      29 ..     242     271 ..     242     272 .. 0.87
   8 !    5.9   0.0    0.0061        18       5      24 ..     278     298 ..     275     300 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.49
                -SSHH.HHHHHHHHHHHHH CS
        HEAT 11 Dpspe.VReaAakaLgala 28
                 + p  VR  A+ +L ++a
  CCE28087.1 16 ESTPLpVRFRALFSLKHVA 34
                4556669999999998766 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.9
                HHHHHHHHH CS
        HEAT 20 AakaLgala 28
                A+ a+ a+a
  CCE28087.1 42 AVAAIEAIA 50
                666666665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.4
                HHHHT-SSHHHHHHHHHHHHH CS
        HEAT  6 lkllsDpspeVReaAakaLga 26
                  +  +ps+      a++Lg+
  CCE28087.1 50 AAAFASPSALLKHELAYCLGQ 70
                455556666666667888886 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.00069
                 HHHHT-..SSHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsD..pspeVReaAakaLgala 28 
                  + lsD  ++p  R  Aa+aLgal 
  CCE28087.1  81 RNVLSDlaEDPMCRHEAAEALGALG 105
                 55688888***************96 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHH CS
        HEAT  17 ReaAakaLgalae 29 
                 R+ A  aL +la+
  CCE28087.1 188 RYRAMFALRDLAS 200
                 889999**99986 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.15
                 HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgala 28 
                 l k l D+s+  R   a  +g+l+
  CCE28087.1 214 LAKGLADSSALFRHEIAFVFGQLS 237
                 7899*****************985 PP

  == domain 7  score: 10.8 bits;  conditional E-value: 0.00016
                 HHHHHHHHT-..SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsD..pspeVReaAakaLgalae 29 
                 +P+l ++ls   +++ VR  Aa+aLg l e
  CCE28087.1 242 IPALTEALSNveEASMVRHEAAEALGSLGE 271
                 6999999977778888**********9976 PP

  == domain 8  score: 5.9 bits;  conditional E-value: 0.0061
                 HHHH.HT-SSHHHHHHHHHHH CS
        HEAT   5 llkl.lsDpspeVReaAakaL 24 
                 +lk  l+D++  VRe+++ aL
  CCE28087.1 278 ILKRfLNDKEKVVRESVIVAL 298
                 455538**********99777 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.13   3.9e+02      20      48 ..      74     104 ..      62     119 .. 0.82
   2 ?    2.3   0.0      0.05   1.5e+02      21      52 ..     209     240 ..     190     266 .. 0.81
   3 !    8.9   0.0   0.00048       1.4      54     102 ..     270     319 ..     242     322 .] 0.80

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.13
        Cnd1  20 eylvepLrkrLkD..edpyVRktaaivvakL 48 
                 e+ v+pLr+ L+D  edp+ R  aa ++  L
  CCE28087.1  74 EAAVKPLRNVLSDlaEDPMCRHEAAEALGAL 104
                 788999******9888999999999887766 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.05
        Cnd1  21 ylvepLrkrLkDedpyVRktaaivvakLilnd 52 
                 + v  L k+L D+++  R   a+v+ +L ++ 
  CCE28087.1 209 PAVLALAKGLADSSALFRHEIAFVFGQLSHPA 240
                 6677899*****************99996664 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00048
        Cnd1  54 vkekgflselaklleDenprVvanalaalteisek.senaiynllpdiis 102
                  +e+g+ + l++ l+D+++ V+++++ al    ++ s+na y l p+ +s
  CCE28087.1 270 GEEEGVEEILKRFLNDKEKVVRESVIVALDMAEHEqSGNAEYALIPEAAS 319
                 45677888999******************988877788999999998876 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   2.0     0.044   1.3e+02      21      55 .]      68     104 ..      20     104 .. 0.70
   2 ?    3.1   0.2     0.049   1.5e+02       7      54 ..     191     235 ..     186     236 .. 0.65
   3 ?    8.4   0.0    0.0011       3.2      23      55 .]     235     269 ..     228     269 .. 0.86
   4 ?    9.0   0.0   0.00069       2.1       2      52 ..     257     298 ..     256     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.044
     HEAT_EZ  21 llqplvpeilpaLlalLnd..dsdeVRaaAagaLgnl 55 
                 l q+ +++++++L + L+d  ++++ R  Aa aLg+l
  CCE28087.1  68 LGQTKHEAAVKPLRNVLSDlaEDPMCRHEAAEALGAL 104
                 4556667788888888888844445588888888875 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.049
     HEAT_EZ   7 AawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 A  aL r la   p+  +++vp ++ aL+++L d+s++ R   a  +g+
  CCE28087.1 191 AMFAL-RdLA--SPPSRPTAVP-AVLALAKGLADSSALFRHEIAFVFGQ 235
                 55566.3344..3444445555.99999999999998877776666666 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0011
     HEAT_EZ  23 qplvpeilpaLlalLnd.dsd.eVRaaAagaLgnl 55 
                 q+ +p+ +paL  +L++ +++ +VR  Aa aLg l
  CCE28087.1 235 QLSHPASIPALTEALSNvEEAsMVRHEAAEALGSL 269
                 5668999*****999998777799*********86 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00069
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLlalLnddsd.eV.RaaAagaL 52 
                  vR+ Aa aLG+l   e e ++    eil+ +l      ++ +V R+ ++ aL
  CCE28087.1 257 MVRHEAAEALGSLG--EEEGVE----EILKRFL-----NDKeKVvRESVIVAL 298
                 69*********655..777777....9999999.....554455599998887 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.06   1.8e+02      14      25 ..      36      47 ..      34      48 .. 0.85
   2 ?    6.2   0.0    0.0068        20       1      18 [.      91     108 ..      91     109 .. 0.88
   3 ?   -0.1   0.0      0.73   2.2e+03       4      16 ..     259     271 ..     257     281 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.06
       TPR_4 14 lGdldeAralle 25
                +Gd+++A a+ e
  CCE28087.1 36 TGDPATAVAAIE 47
                7********987 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0068
       TPR_4   1 arallaLArallalGdld 18 
                 + +++  A+al alGd +
  CCE28087.1  91 PMCRHEAAEALGALGDTE 108
                 5789999*********86 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.73
       TPR_4   4 llaLArallalGd 16 
                 ++  A+al  lG+
  CCE28087.1 259 RHEAAEALGSLGE 271
                 5556666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2260.79
//
Query:       CCE28088.1  [L=342]
Description: probable nucleotide-binding protein NBP35 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-95  318.9   0.0    2.4e-95  318.7   0.0    1.0  1  ParA          NUBPL iron-transfer P-loop NTPase
      4e-08   33.4   0.0    1.8e-07   31.2   0.0    2.0  1  CbiA          CobQ/CobB/MinD/ParA nucleotide binding domain
    5.8e-05   23.1   0.0    0.00038   20.4   0.0    1.9  1  AAA_31        AAA domain
      0.001   18.3   0.1     0.0029   16.8   0.1    1.8  2  ArsA_ATPase   Anion-transporting ATPase
     0.0059   16.2   0.1      0.011   15.4   0.1    1.3  1  AAA_25        AAA domain
     0.0064   16.0   0.0       0.93    8.9   0.1    2.2  2  Fer4_NifH     4Fe-4S iron sulfur cluster binding proteins, Ni
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.022   14.7   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
      0.025   13.9   0.0      0.062   12.6   0.0    1.7  1  MipZ          ATPase MipZ
      0.028   14.2   0.0          4    7.2   0.0    2.2  2  AAA_26        AAA domain
       0.04   13.8   0.0      0.075   12.9   0.0    1.4  1  Rad17         Rad17 P-loop domain
      0.051   13.6   0.0      0.094   12.7   0.0    1.3  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.07   13.5   0.0       0.13   12.7   0.0    1.5  1  RNA_helicase  RNA helicase
      0.092   12.5   0.0       0.14   12.0   0.0    1.2  1  CLP1_P        mRNA cleavage and polyadenylation factor CLP1 P
       0.14   12.6   0.0       0.24   11.8   0.0    1.3  1  AAA_16        AAA ATPase domain
       0.18   11.4   0.1       0.69    9.5   0.0    1.8  2  SRP54         SRP54-type protein, GTPase domain
       0.21   10.7   0.0       0.34   10.1   0.0    1.2  1  NB-ARC        NB-ARC domain
       0.24   10.4   0.0       0.36    9.8   0.0    1.2  1  T2SSE         Type II/IV secretion system protein


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.7   0.0   2.2e-98   2.4e-95       1     245 [.      76     327 ..      76     328 .. 0.97

  Alignments for each domain:
  == domain 1  score: 318.7 bits;  conditional E-value: 2.2e-98
        ParA   1 kvkkviavlSgKGGVGKStvavnlAlaLa.kkglkvgllDaDiyGpsiprllgveeekpeqsekkliPvea.kgikvmSigfllesedeavvwrGpmks 97 
                 +vk++i+vlSgKGGVGKSt+++ lA a+a + + +vg++D+Di+Gpsip+++gveee++++s +++ Pv + +++ vmSi+f+l+++d+av+wrGp+k+
  CCE28088.1  76 NVKHKILVLSGKGGVGKSTFTTLLAHAFAtNPDNNVGIMDTDICGPSIPKMMGVEEETIHVSGSGWSPVWVmDNLGVMSIQFMLPNRDDAVIWRGPKKN 174
                 69**************************967799****************************99******989************************** PP

        ParA  98 kaikqllkdvewgelDyLiiDlPPGtgDeqltvaqkl...plagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteif..gk 191
                 ++ik++lkdvewg+lD+L++D+PPGt+De+l+v + l    ++gav+Vttpqeval dv+k+i++++k+ ++v+G+ eNmsgfvcp+c+ +++if  ++
  CCE28088.1 175 GLIKKFLKDVEWGDLDFLLVDTPPGTSDEHLSVNSFLkesGIDGAVVVTTPQEVALLDVRKEIDFCRKAGIRVIGLAENMSGFVCPSCRGESQIFraTT 273
                 ***********************************99777788****************************************************6667 PP

        ParA 192 gggeklaeelgvpllgeipldpeireasdegkplvlkepeseaakaleeiaekv 245
                 ggg+ laee+g+p+lg++pldp+ir a+d g++++ + p+s+a +al++++++v
  CCE28088.1 274 GGGRGLAEEMGIPFLGAVPLDPRIRMACDYGESYFDSFPDSPACRALKDVVRNV 327
                 9*************************************************9998 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.7e-10   1.8e-07       1     119 [.      81     298 ..      81     307 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.7e-10
                 EEEEESSTTSSHHHHHHHHHHHHHH.TT--EEEEEEEESSCCCCHHTTEB-HHHH............................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................ RF
        CbiA   1 iaiastkGGvGKTtlaanLaralar.rglrVllvDaDpqannlaileglendiep............................................ 54 
                 i++ s+kGGvGK+t+++ La a+a    ++V   D+D  +++    +g+e++                                               
  CCE28088.1  81 ILVLSGKGGVGKSTFTTLLAHAFATnPDNNVGIMDTDICGPSIPKMMGVEEETIHvsgsgwspvwvmdnlgvmsiqfmlpnrddaviwrgpkknglikk 179
                 789**********************559*************9985555555554489999999999999999999999999999999998888888888 PP

                 ....................................................CCHCCCHHHHHHCHCHHHH...EEEEEEEEESS....-TTCHHHHHH CS
                 ....................................................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxx RF
        CbiA  55 ....................................................dlkrllellealgkkkall.lkiagvvlnrvdgene.etllkealee 99 
                                                                     d+ + + ++++ g+++  l  ++ g+v    +ge + +++   + + 
  CCE28088.1 180 flkdvewgdldfllvdtppgtsdehlsvnsflkesgidgavvvttpqevallDVRKEIDFCRKAGIRVIGLaENMSGFVCPSCRGESQiFRATTGGGRG 278
                 888888888888888888888888888888888888888888888888888855555555555555533335666666666666653313333333333 PP

                 HHHHCTS-EEEEEE--CCHC CS
                 xxxxxxxxxxxxxxxxxxxx RF
        CbiA 100 lkqrygvpvlgviprdeava 119
                 l +++g+p+lg +p d ++ 
  CCE28088.1 279 LAEEMGIPFLGAVPLDPRIR 298
                 33333777777777777765 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.6e-07   0.00038       4     129 ..      81     200 ..      78     243 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.6e-07
      AAA_31   4 IaianqKGGvGKTTtsvnlaaala.klgkkvLlvDlDpQanatt.glgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielvel 100
                 I +   KGGvGK+T ++ la a+a + ++ v ++D D  + +    +g+     e++ ++v  + +  + + +   ++nl ++  +  L + ++ ++  
  CCE28088.1  81 ILVLSGKGGVGKSTFTTLLAHAFAtNPDNNVGIMDTDICGPSIPkMMGV-----EEETIHV--SGSGWSPVWV---MDNLGVMSIQFMLPNRDDAVIWR 169
                 778899*****************97889*********988665513443.....4444455..4667777777...88999999999999999999988 PP

      AAA_31 101 ekkeeil.kellekvk.deYDyiiiDcpPsL 129
                   k++ l k++l++v+  + D+ ++D+pP  
  CCE28088.1 170 GPKKNGLiKKFLKDVEwGDLDFLLVDTPPGT 200
                 8887776699999998457999999999954 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.7e-06    0.0029       1      38 [.      79     117 ..      79     157 .. 0.84
   2 ?   -1.4   0.0         1   1.1e+03     115     134 ..     179     198 ..     173     249 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.7e-06
                  -EEEEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEE-S CS
  ArsA_ATPase   1 lkvilvgGKGGVGKttvsaatavklsek.gkkvllistD 38 
                  +k+++++GKGGVGK+t  + +a   + + +++v ++ tD
   CCE28088.1  79 HKILVLSGKGGVGKSTFTTLLAHAFATNpDNNVGIMDTD 117
                  5899***************99999776515556566666 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
                  HHHHHHHCSSSSEEEEESBS CS
  ArsA_ATPase 115 ellkyvkeeeydvvvlDtaP 134
                  ++lk v+  + d +++Dt+P
   CCE28088.1 179 KFLKDVEWGDLDFLLVDTPP 198
                  55666666777777777777 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1     1e-05     0.011      32      59 ..      78     105 ..      67     113 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1e-05
      AAA_25  32 agelallaGapgtGKttlaldlalavat 59 
                 ++++ +l G +g+GK+t+++ la+a at
  CCE28088.1  78 KHKILVLSGKGGVGKSTFTTLLAHAFAT 105
                 678899*******************997 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00088      0.93       4      27 ..      83     106 ..      80     129 .. 0.85
   2 ?    4.9   0.0     0.014        15     195     246 ..     278     329 ..     239     337 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00088
   Fer4_NifH   4 aiyGkGGiGksttsqnlsaalaem 27 
                  + GkGG+Gkst ++ l++a+a++
  CCE28088.1  83 VLSGKGGVGKSTFTTLLAHAFATN 106
                 678***************999875 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.014
   Fer4_NifH 195 kfaeelgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrelarkile 246
                  +aee+g++ l +vP+d  +r a    +  ++  p+s+ +   +++ r++++
  CCE28088.1 278 GLAEEMGIPFLGAVPLDPRIRMACDYGESYFDSFPDSPACRALKDVVRNVAK 329
                 5799********************9999****99****99999999999976 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0     2e-05     0.022      95     121 ..      75     101 ..      66     114 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-05
                  HHCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  95 ellkdktsvlvGqSGvGKStLinallp 121
                  +++k+k+ vl G+ GvGKSt+   l+ 
   CCE28088.1  75 ANVKHKILVLSGKGGVGKSTFTTLLAH 101
                  56789***************9988875 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.8e-05     0.062       1     109 [.      79     198 ..      79     233 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.8e-05
                 EEEEE--SSTTSSHHHHHHHHHHHHHTT.T--EEEEE--TTT-HHHHHHHHHHHHHHHHT........-.-----EE.E-SSS-HHHHTTS-HHHHHHH CS
        MipZ   1 hvivlgnekGGsGksttavhvavaLlkk.Garvaaidldlrqrtlarylenraataerkg........l.sLplpea.lalseaeeaeveeeeeaevae 88 
                 h i +   kGG Gkst +  +a a++++   +v+ +d d+   ++ + ++   +t + +g        + +L + ++ ++l++ + a + ++ +++   
  CCE28088.1  79 HKILVLSGKGGVGKSTFTTLLAHAFATNpDNNVGIMDTDICGPSIPKMMGVEEETIHVSGsgwspvwvMdNLGVMSIqFMLPNRDDAVIWRGPKKN-GL 176
                 56778889****************99872679**********999999998888877655222222111223333331345555555555555544.56 PP

                 HHHHHHHHH.HH-SEEEEE--S CS
        MipZ  89 leelvadle.aeldfividtPG 109
                 +++ ++d+e  +ldf+++dtP 
  CCE28088.1 177 IKKFLKDVEwGDLDFLLVDTPP 198
                 7777777773468888888864 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.019        20       2      26 ..      80     104 ..      79     114 .. 0.85
   2 ?    7.2   0.0    0.0038         4     131     195 ..     219     298 ..     172     300 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.019
      AAA_26   2 tifvtgtdtgvGKTvvslgLvralk 26 
                 +i+v +   gvGK++ +++L++a+ 
  CCE28088.1  80 KILVLSGKGGVGKSTFTTLLAHAFA 104
                 789999999*************984 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0038
      AAA_26 131 vilVargglgtinqllltiealrqknvrvlGvilNk....vrnp..e...........nvetlekksgipvlGvvPylpdle 195
                  ++V+++++ ++ ++   i+++r+ ++rv+G+  N     +  p  +             + l +  gip lG+vP +p+++
  CCE28088.1 219 AVVVTTPQEVALLDVRKEIDFCRKAGIRVIGLAENMsgfvC--PscRgesqifrattgGGRGLAEEMGIPFLGAVPLDPRIR 298
                 467777788899999999**************998755432..2343334444455556666666667********999875 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.1e-05     0.075      38      72 ..      72     106 ..      67     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.1e-05
       Rad17  38 dvLesrkkriLLisGPsGCgkstvvkvLskelgik 72 
                   L + k++iL++sG  G gkst    L+  ++++
  CCE28088.1  72 ARLANVKHKILVLSGKGGVGKSTFTTLLAHAFATN 106
                 568999******************99999887665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.9e-05     0.094      11      45 ..      71     105 ..      65     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.9e-05
                 HHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  11 gkklakalgdvilLeGdLGaGKTtlvrglakalgv 45 
                  ++la++ +++++L+G+ G+GK+t++  la+a+  
  CCE28088.1  71 SARLANVKHKILVLSGKGGVGKSTFTTLLAHAFAT 105
                 57788866899******************999865 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00012      0.13       2      26 ..      83     107 ..      82     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                   +l+G+ g+GKSt+++ La+a++++ 
    CCE28088.1  83 VLSGKGGVGKSTFTTLLAHAFATNP 107
                   799****************999554 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013      0.14       1      36 [.      86     122 ..      86     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgrkpv.yvDlDvGqse 36 
                 G+  +GKST+++lL+   + +  + v ++D+D+  ++
  CCE28088.1  86 GKGGVGKSTFTTLLAHAFATNPDNNVgIMDTDICGPS 122
                 66789***********99988865555*****86554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00022      0.24      25      51 ..      80     106 ..      69     137 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00022
      AAA_16  25 elvllsGesGvGKsslvrellralekd 51 
                  +++lsG  GvGKs+  + l++a+ ++
  CCE28088.1  80 KILVLSGKGGVGKSTFTTLLAHAFATN 106
                 789***************999877665 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00066      0.69       2      39 ..      80     118 ..      79     133 .. 0.91
   2 ?   -1.0   0.0       1.1   1.1e+03     118     147 ..     191     221 ..     175     258 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00066
                 EEEEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEEEST CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkke.gkkvllvaaDt 39 
                 ++++l G  G+GK t ++ La+ + ++  ++v ++ +D+
  CCE28088.1  80 KILVLSGKGGVGKSTFTTLLAHAFATNpDNNVGIMDTDI 118
                 578999*******************99899999998886 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
                 EEEEETTBHTHHHH.HHHHHHHHSSCSEEEE CS
       SRP54 118 llvldattgqeavk.qakaFkeavgitgvil 147
                 +l +d+  g ++ +  +++F ++ gi+g+++
  CCE28088.1 191 FLLVDTPPGTSDEHlSVNSFLKESGIDGAVV 221
                 4555555555544446677777777776543 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00032      0.34      17      39 ..      76      98 ..      68     108 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00032
                TSCSEEEEEEESTTSSHHHHHHH CS
      NB-ARC 17 elqslvvalvGmgGvGKttlakq 39
                +++  ++ l+G+gGvGK+t  + 
  CCE28088.1 76 NVKHKILVLSGKGGVGKSTFTTL 98
                566779***********997654 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00034      0.36     128     166 ..      78     116 ..      65     138 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00034
       T2SSE 128 erglilvsGgTgsGKttllyallkeinksderivtvEDp 166
                 +++++++sG  g GK+t++  l + ++++ ++ v + D+
  CCE28088.1  78 KHKILVLSGKGGVGKSTFTTLLAHAFATNPDNNVGIMDT 116
                 7999******************99999997777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2510.68
//
Query:       CCE28089.1  [L=187]
Description: related to glia maturation factor beta [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-17   62.8   0.0    3.6e-17   62.3   0.0    1.2  1  Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
  ------ inclusion threshold ------
      0.031   14.7   0.3      0.044   14.2   0.3    1.3  1  LPD5         Large polyvalent protein-associated domain 5
       0.58    9.9   2.3        1.4    8.7   0.5    2.1  2  HTH_ABP1_N   Fission yeast centromere protein N-terminal doma


Domain annotation for each model (and alignments):
>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0     6e-21   3.6e-17       2     115 ..      57     180 ..      56     184 .. 0.90

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 6e-21
                  HHHHHHHCTTT.....SSEEEEEEECTTTEEEEEE..SS-......HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHH CS
  Cofilin_ADF   2 keafkelksgk....ktkyilfkidddkeeivvee..ege......tyeelreelpeseprYavydveyehddeskrsklvfIswvPdsapikqkmly 87 
                  ke+++++++ +    + +++++ id+++ ei+       +      ++ee +e+lp++ pr++++++  +++d++ + ++v++++ P +++ + +mly
   CCE28089.1  57 KEQLRKFRLTTsrakDPQAVIYMIDKNTHEIRQALddY-DearvykSLEEVAEDLPDHTPRFVLLSYPLTTSDGRLSVPYVLLYYLPITCNAEVRMLY 153
                  56778888877888899**************9877541.146889999************************************************** PP

                  HHHHHHHHHHCTTSEEEEEE-CGGCCSH CS
  Cofilin_ADF  88 asskdalkkelkgisveieatdldelte 115
                  a+ k+ ++++ +  sv i +++ ++l+e
   CCE28089.1 154 AGAKELMRSTSEAGSV-IDVESVEDLDE 180
                  *********9977777.99999999987 PP

>> LPD5  Large polyvalent protein-associated domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   7.3e-06     0.044      48     100 ..      48     104 ..       8     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.3e-06
        LPD5  48 r....keekpkkkikfdvYrrratkevfigkkigkkklkLkegFksvkeAreylken 100
                 r    + e +++  kf++ + ra++   +++ i+k++ ++++++++  eAr y + +
  CCE28089.1  48 RlysfSGETKEQLRKFRLTTSRAKDPQAVIYMIDKNTHEIRQALDDYDEARVYKSLE 104
                 14555566788889************999999********************98755 PP

>> HTH_ABP1_N  Fission yeast centromere protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.5   0.00023       1.4       1      28 [.      17      43 ..      17      46 .. 0.85
   2 ?    0.6   0.1     0.076   4.6e+02       5      21 ..      52      68 ..      48      90 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00023
  HTH_ABP1_N  1 rRkaiskeqkkaLRawafqqnprpsqka 28
                +R +i+ +q+  LR+++ +  p+++q a
  CCE28089.1 17 KRLPITAAQRLDLRKHHPKY-PHLRQAA 43
                6889************9555.9999987 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.076
  HTH_ABP1_N  5 iskeqkkaLRawafqqn 21
                 s+e k++LR++  + +
  CCE28089.1 52 FSGETKEQLRKFRLTTS 68
                578999****9976654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1345.26
//
Query:       CCE28090.1  [L=216]
Description: probable transforming protein Ras-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-59  198.5   0.1    5.8e-59  198.3   0.1    1.0  1  Ras           Ras family
      4e-20   72.2   0.0    5.8e-20   71.7   0.0    1.2  1  Roc           Ras of Complex, Roc, domain of DAPkinase
      2e-08   33.9   0.0    2.3e-08   33.7   0.0    1.1  1  Arf           ADP-ribosylation factor family
    1.1e-05   25.0   0.1    5.5e-05   22.8   0.0    2.0  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    0.00022   21.2   0.4       0.72    9.7   0.0    2.4  2  RsgA_GTPase   RsgA GTPase
    0.00069   19.6   0.0     0.0015   18.5   0.0    1.6  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
     0.0021   18.1   0.0     0.0032   17.5   0.0    1.3  1  MMR_HSR1      50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.031   14.1   1.8       0.31   10.8   0.0    2.1  2  ATP_bind_1    Conserved hypothetical ATP binding protein
      0.053   13.1   0.0       0.15   11.6   0.0    1.8  1  FeoB_N        Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.3   0.1   2.9e-62   5.8e-59       1     161 [.      12     172 ..      12     173 .. 0.99

  Alignments for each domain:
  == domain 1  score: 198.3 bits;  conditional E-value: 2.9e-62
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Klv+vG ++vGK++l+++ ++++F +ey++Ti +d+y+k++ +d++ + l+++DTAGqee++++re+y+r++eg+llvy+i+sr+sf++++++ ++i r
  CCE28090.1  12 KLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTI-EDSYRKQCVIDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSISSRQSFDEITTFQQQILR 109
                 99******************************.****************************************************************** PP

                 HST.TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vae.envpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 v++ + +p+v+vGnK+Dle++r+vs++ege+la++++++f+etSAk++ nv++af++++rei+
  CCE28090.1 110 VKDrDYFPMVVVGNKCDLESEREVSRQEGEALARSFNCRFIETSAKSRINVDKAFYDIVREIR 172
                 **98889*****************************************************996 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   2.9e-23   5.8e-20       1     120 []      12     127 ..      12     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 2.9e-23
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K+v+vG +gvGK++l  ++++++f +++++ti  ++ + +++ i+     ++     l++ DtaGqe+++++++ y+r  + ++lvy    ++s++++ 
  CCE28090.1  12 KLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRK-QCV-ID-----EE--VALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSissRQSFDEIT 101
                 99*******************************99865.553.33.....23..4689*****************************976444678999 PP

                 HHHHHHHHHCSSS..-EEEEEE-TTT CS
         Roc  97 eWlkelkkvagks..pvilvgnkiDl 120
                 +  +++ +v +++  p+++vgnk+Dl
  CCE28090.1 102 TFQQQILRVKDRDyfPMVVVGNKCDL 127
                 ******9999887679********95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.1e-11   2.3e-08      12     163 ..       8     159 ..       1     171 [. 0.77

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.1e-11
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEEEEE..TTEE.EEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt.tvPTigfnveelei..knlk.ftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLka 106
                  +e++++++G  + GK+ +  +l + ++v+   PTi    ++  +  +++  + v D  Gqe+   + ++Y+++ ++ + v   + r+ ++e  +  ++
  CCE28090.1   8 LREYKLVVVGGGGVGKSCLTIQLIQSHFVDeYDPTIEDSYRKQCVidEEVAlLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSISSRQSFDEITTFQQQ 106
                 589****************99998888765389***987765333224554278999****************************************** PP

                 HCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBT CS
         Arf 107 lleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeg 163
                 +l+ ++    +++v++NK Dl++    +e++++ g    + + +   +++sa ++ +
  CCE28090.1 107 ILRVKDRDYFPMVVVGNKCDLESE---REVSRQEGEALAR-SFNCRFIETSAKSRIN 159
                 *********************854...4444443333222.4445555555555555 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.13   2.5e+02       6      27 ..      13      34 ..       9      56 .. 0.79
   2 !   22.8   0.0   2.8e-08   5.5e-05      66     150 ..      54     145 ..      23     204 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.13
                EEEEESTTSSHHHHHHHHHHHT CS
    GTP_EFTU  6 igiighvDhGKtTLtdrLlykt 27
                ++++g    GK++Lt +L++++
  CCE28090.1 13 LVVVGGGGVGKSCLTIQLIQSH 34
                678899999******9999765 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 2.8e-08
                 TCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT.....TBSTHHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHHHH.HHHHHHH CS
    GTP_EFTU  66 etkkylinliDtPGHvdFskevirglrvlDgavlvvdav.....eGvepqteevlrlalkegvpiivfiNKmDrl.kaelkeiv.eevkqkl 150
                 +++  l+ ++Dt G +++s   ++ +r+ +g +lv +++     + +++  +++lr+  +   p++v+ NK+D   + e++++  e++ +++
  CCE28090.1  54 DEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSISsrqsfDEITTFQQQILRVKDRDYFPMVVVGNKCDLEsEREVSRQEgEALARSF 145
                 56778899***************************999955555558888899999999999***********9864444333303333333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00056       1.1      97     122 ..       8      33 ..       4      48 .. 0.84
   2 !    9.7   0.0   0.00036      0.72      34      92 ..     102     162 ..      82     173 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00056
                  CTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpe 122
                  l++   v+vG  GvGKS L  +l+++
   CCE28090.1   8 LREYKLVVVGGGGVGKSCLTIQLIQS 33 
                  66777899***********9888764 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00036
                  HHHHHHHHHHHTT-.EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHHH CS
  RsgA_GTPase  34 lldrfLvlaeekgi.epvivlnKiDlleeee.eleelkeelealgyevllvsaktkeglee 92 
                  + ++ ++ +++++  ++v+v nK+Dl +e+e + +e ++  ++++++++ +sak++ ++++
   CCE28090.1 102 TFQQQILRVKDRDYfPMVVVGNKCDLESEREvSRQEGEALARSFNCRFIETSAKSRINVDK 162
                  344555555555552667777**********6677778888999******99998877765 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   7.4e-07    0.0015      50     100 ..     110     167 ..      90     172 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7.4e-07
  MMR_HSR1_Xtn  50 egnrvYipclyvlNKiDl.....isleeldelare..pnsvviSaekelnldeLkeki 100
                    ++r Y p+++v NK+Dl     +s +e ++lar    + + +Sa++++n+d+   +i
    CCE28090.1 110 VKDRDYFPMVVVGNKCDLesereVSRQEGEALARSfnCRFIETSAKSRINVDKAFYDI 167
                   4689**************4444444455555555453477889********9866555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.6e-06    0.0032       2     114 .]      13     124 ..      12     124 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.6e-06
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT...TTCSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdas...eeklkplde 95 
                  ++vG   vGKS L  +l+++   v ++  t  d  +++  +++    + ++Dt+G  e   e   +++++ +  e  l+++ ++++   + +++  ++
  CCE28090.1  13 LVVVGGGGVGKSCLTIQLIQS-HFVDEYDPTIEDSYRKQCVIDEevALLDVLDTAG-QE---EYSAMREQYMRTGEGFLLVYSISSRqsfD-EITTFQQ 105
                 689****************97.4577777777777666655444347799******.55...44489999999888666666666554422.5677778 PP

                 HHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  96 eleelleeakkplilvlnk 114
                 ++ ++++++  p+++v nk
  CCE28090.1 106 QILRVKDRDYFPMVVVGNK 124
                 8888877677778888776 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.4     0.042        84       1      18 [.      15      32 ..      15      43 .. 0.81
   2 ?   10.8   0.0   0.00016      0.31      93     175 ..      60     136 ..      43     181 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.042
  ATP_bind_1  1 vvGpaGsGKttfvgalse 18
                vvG+ G+GK+ ++ +l++
  CCE28090.1 15 VVGGGGVGKSCLTIQLIQ 32
                89*********9877765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00016
  ATP_bind_1  93 yllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkek..lek 175
                 + ++Dt GQ e   ++e+         +   +  vy + s+ + d ++ +++  + l++  r   P+vvv nk+Dl +e+  +++
  CCE28090.1  60 LDVLDTAGQEEYSAMREQYM------RTGEGFLLVYSISSRQSFDEITTFQQ--QILRVKDRDYFPMVVVGNKCDLESERevSRQ 136
                 55899*******99999988......55555666777777766665555555..4889999999************886655333 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.4e-05      0.15       3     151 ..      13     162 ..      11     167 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.4e-05
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEE.EEEEGGGHHHHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvv.nvvdatnlernLyLtlq 100
                 +++vG   vGk+ l  +l +++  v  +   t+e +  k  + ++ev ++D+  +   ++ys    + ++++ + e  ++v ++   ++++   ++  q
  CCE28090.1  13 LVVVGGGGVGKSCLTIQLIQSH-FVDEYD-PTIEDSYRKQCVIDEEVALLDVLDTAGQEEYS---AMREQYMRTGEGFLLVySISSRQSFDEITTFQQQ 106
                 6778888888888888887665.477775.47777777777777888888864443333333...3445666665555544144455566666777888 PP

                 HHHTT....SSEEEEEETHHHHHHTTE.EE-HHHHHHHHTS-EEEEBTTTTBTHHH CS
      FeoB_N 101 llelg....vpvvlalnmideaekkgi.eidlkkLsekLgvpvvktsakkkegiee 151
                 +l ++     p+v++ n++d  +++++ + + ++L++++++  ++tsak++ ++++
  CCE28090.1 107 ILRVKdrdyFPMVVVGNKCDLESEREVsRQEGEALARSFNCRFIETSAKSRINVDK 162
                 88877444569*********87766651667899****************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 1665.89
//
Query:       CCE28091.1  [L=978]
Description: uncharacterized protein CPUR_01565 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (978 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.23s 00:00:00.89 Elapsed: 00:00:00.40
# Mc/sec: 7339.71
//
Query:       CCE28092.1  [L=106]
Description: uncharacterized protein CPUR_01566 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       166  (0.00925874); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 793.22
//
Query:       CCE28093.1  [L=971]
Description: related to importin MTR10 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-24   84.1   4.6    7.1e-23   81.3   0.1    4.3  8  Xpo1            Exportin 1-like protein
    1.5e-06   28.0   0.0    6.4e-06   26.0   0.0    2.2  2  IBN_N           Importin-beta N-terminal domain
      5e-05   23.2   1.5        1.4    8.9   0.0    4.9  5  UME             UME (NUC010) domain
  ------ inclusion threshold ------
      0.011   15.3   0.0       0.31   10.5   0.0    2.3  2  Tab2_like       RNA-binding protein Tab2/Atab2
      0.036   13.0   0.9      0.093   11.7   0.1    2.0  2  FAM178          Family of unknown function, FAM178
      0.065   13.3   0.0        9.2    6.4   0.0    3.8  4  Importin_rep_3  Importin 13 repeat
       0.12   12.6   0.0       0.39   11.0   0.0    1.8  1  RVT_N           N-terminal domain of reverse transcriptase


Domain annotation for each model (and alignments):
>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.1   2.8e-26   7.1e-23       1     149 []     105     248 ..     105     248 .. 0.98
   2 ?   -2.4   0.0       1.8   4.5e+03      71     111 ..     289     327 ..     280     329 .. 0.75
   3 ?   -3.2   0.0       3.1   8.1e+03     111     139 ..     352     380 ..     351     381 .. 0.80
   4 ?    0.7   0.0       0.2     5e+02      55      95 ..     389     433 ..     387     456 .. 0.83
   5 ?   -3.0   0.0       2.6   6.7e+03      99     121 ..     488     510 ..     462     540 .. 0.64
   6 ?   -2.9   0.0       2.5   6.3e+03      70      94 ..     545     569 ..     517     600 .. 0.75
   7 ?   -1.5   0.0      0.92   2.3e+03      47      98 ..     595     646 ..     556     676 .. 0.73
   8 ?   -3.4   0.0       3.6   9.2e+03      11      34 ..     756     779 ..     751     785 .. 0.73

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 2.8e-26
                 THHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT.HHHHHHHHHHHHHHHHHHHTSHTTTSCHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
        Xpo1   1 pkflrnklaealaelflqeypnnWpsffddllsllssspsglelllriLkvlpeEiadfsrskleqer.rndlkdllrsnvqkilelllqileqsqskk 98 
                 pk +r +l+++la l++q+  ++W +++++++++ls  p+   ++l +L+vlpeE+++ ++ +l++e+   +++ ll +n++++++ll ++ ++s    
  CCE28093.1 105 PKPIRVQLCVCLAILAIQM--KDWDNVLSSVVQSLSETPESHACILDFLRVLPEEVTEGRKITLSEEElSARTRVLLGDNTEQVVQLLVTYSQSSPA-- 199
                 6889***************..***********************************************9***********************99887.. PP

                 HHHHHHHHHHHHHHHHTTTS-HHHHHTSCHHHHHHHHCCSCCCHHHHHHHH CS
        Xpo1  99 qsselveavLkclsswvswidiglivnnpllnllfqlLsdpelreaavecL 149
                   ++ + + ++c++sw++++++  i+++pl+ ++f  +s +e   +a+ecL
  CCE28093.1 200 --ASRNPQLMECITSWLREVPVMNIIASPLIAHIFAGISADECGPEAAECL 248
                 ..8999********************************************8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH CS
        Xpo1  71 dlkdllrsnvqkilelllqileqsqskkqsselveavLkcl 111
                 d  + l++ +++ ++++   + ++  +     lveavL+c 
  CCE28093.1 289 DALKSLTKVFSTAATSWVVAIARQPGQF--RPLVEAVLECA 327
                 5556677778888888888888888766..99999999997 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.1
                 HHHHTT.TS-HHHHHTSCHHHHHHHHCCSC CS
        Xpo1 111 lsswvs.widiglivnnpllnllfqlLsdp 139
                 l+++++  +++  i++n l+++l+++L++p
  CCE28093.1 352 LERYIQgRVELMDIYSN-LVDILLKHLEYP 380
                 67788888888888887.999999999766 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.2
                 HHHTSHTTTSCHHH..HHHHHHHHHHH..HHHHHHHHHHHHHHHH CS
        Xpo1  55 Eiadfsrskleqer..rndlkdllrsn..vqkilelllqileqsq 95 
                 +++d +r+++e+ r  r+++ d++++   v+ + ++l+++l++ q
  CCE28093.1 389 DLFDGDREQEEKFRdfRHRMGDTMKDAcdVMGVTQCLSKVLQAIQ 433
                 778888888888887889999999999999999999999998765 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHHHHHHTTTS-HH CS
        Xpo1  99 qsselveavLkclsswvswidig 121
                  +++l  a++ +l+++ +w    
  CCE28093.1 488 GHEKLRFATIMVLGRYTEWTAAH 510
                 34777778888888888887654 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
        Xpo1  70 ndlkdllrsnvqkilelllqileqs 94 
                 +d kdll+ +v ++ +++ qil++ 
  CCE28093.1 545 TDCKDLLSGQVLQLQTFYDQILDKL 569
                 5678888888888888888888765 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 0.92
                 HHHHHHHHHHHTSHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
        Xpo1  47 riLkvlpeEiadfsrskleqerrndlkdllrsnvqkilelllqileqsqskk 98 
                 riLk+  + +++    k+ q  +++ k +l++++q i  ++++++ + + ++
  CCE28093.1 595 RILKTYTDPLVQRLMAKANQAVNEEGKLALADHLQLITIFVQHVMPYVNRGE 646
                 5555555555554456677777888888888899988888888888887766 PP

  == domain 8  score: -3.4 bits;  conditional E-value: 3.6
                 HHHHHHHHHTTTTSTTHHHHHHHH CS
        Xpo1  11 alaelflqeypnnWpsffddllsl 34 
                 ++a+l  +e p+ + +ff  l+++
  CCE28093.1 756 VMADLQPRELPDVIDDFFRLLIDA 779
                 677777788888888888777765 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   2.5e-09   6.4e-06       1      72 [.      33      98 ..      33     100 .. 0.92
   2 ?   -3.5   0.0       4.1     1e+04      53      72 ..     833     852 ..     821     853 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.5e-09
                HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnll 72
                A++ L++++k++ ++ +l+ il++s  + e+ ++Aa++L+ +it+  +      ++++++   +r+++l ll
  CCE28093.1 33 AHEYLERFQKSNSSWGTLMGILQSSGEP-EATLFAAITLRGKITYDLT-----TQVSPSDLPALRTQILLLL 98
                7899************************.****************977.....4999999999999998765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.1
                 HCGSXHHHHHHHHHHHHHHH CS
       IBN_N  53 kqslpseekeqIrnnllnll 72 
                 ++++++ + + Irn + nll
  CCE28093.1 833 SEQIQPPQAAAIRNIVRNLL 852
                 33889999999999877765 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.8   4.6e+03      42      60 ..     100     118 ..      84     139 .. 0.65
   2 ?   -1.1   0.0      0.71   1.8e+03      46      64 ..     197     216 ..     186     275 .. 0.62
   3 ?    3.3   0.0      0.03        77      27      80 ..     285     348 ..     274     356 .. 0.71
   4 !    8.9   0.0   0.00053       1.4      10      74 ..     436     499 ..     420     524 .. 0.88
   5 !    5.4   0.0    0.0064        16      49      83 ..     656     690 ..     609     701 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.8
         UME  42 lagssissalpqimacLqs 60 
                 ++ +  ++++ q+++cL +
  CCE28093.1 100 HFAPGPKPIRVQLCVCLAI 118
                 4444455667777777754 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.71
         UME  46 s.issalpqimacLqsalei 64 
                 s ++s  pq+m c  s l++
  CCE28093.1 197 SpAASRNPQLMECITSWLRE 216
                 44666667777777776665 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.03
         UME  27 aekkraikaleeliklagss..issalpq.......imacLqsaleid..elrsaalsvWatlls 80 
                 +e   a+k+l ++++ a +s  +++a+ q       + a+L  a +++  ++ +++++ W +l +
  CCE28093.1 285 DEDVDALKSLTKVFSTAATSwvVAIAR-QpgqfrplVEAVLECAARDKecDVIEHTFDFWYELKQ 348
                 566678888888888888886533332.123344449999999999964478899*****98866 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00053
         UME  10 ltrlseklndshgkkslaekkraikaleeliklagssissalpqimacLqsaleidelrsaalsv 74 
                 +++ + ++n+s+   + +e +  + a+++l +++ +  +++lpq+m +L ++  +++lr a++ v
  CCE28093.1 436 MQKYAAQVNGSNVP-HWQELEAPLFAMRALGRMVDKDENVVLPQLMPLLVQMPGHEKLRFATIMV 499
                 67777788888777.88999999************************************999866 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.0064
         UME  49 salpqimacLqsaleidelrsaalsvWatllsnle 83 
                  + p ++++L + l+   +++  +++W+ ++++  
  CCE28093.1 656 EVFPILSTVLDNFLDFTPICERICRCWRNMVTSYR 690
                 455567999**********************9864 PP

>> Tab2_like  RNA-binding protein Tab2/Atab2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012      0.31      59     105 ..     398     444 ..     383     463 .. 0.88
   2 ?    2.1   0.0     0.044   1.1e+02      62      93 ..     686     717 ..     680     769 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
   Tab2_like  59 PekirvFRpqmlnlitkaceelgikvepsrrtlaLkqwleereeevY 105
                  ek+r FR++m   ++ ac+ +g++   s+   a++ w+++ +++v 
  CCE28093.1 398 EEKFRDFRHRMGDTMKDACDVMGVTQCLSKVLQAIQLWMQKYAAQVN 444
                 57899***********************************9999875 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.044
   Tab2_like  62 irvFRpqmlnlitkaceelgikvepsrrtlaL 93 
                 +  +R++m  ++ + +++l i+ + sr    L
  CCE28093.1 686 VTSYRTAMAPMLPEMANKLAISFNTSREGCFL 717
                 678************************86555 PP

>> FAM178  Family of unknown function, FAM178
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.6e-05     0.093     301     355 ..     110     164 ..     106     210 .. 0.93
   2 ?   -1.6   0.1      0.41     1e+03     302     320 ..     420     438 ..     410     442 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.6e-05
      FAM178 301 vdlqqlllklLenikdWptklpelclalselsdhhHNLlalvqllpdvtsrgrql 355
                 v+l  +l  l  ++kdW++ l+++ ++lse  + h  +l   ++lp+  + gr++
  CCE28093.1 110 VQLCVCLAILAIQMKDWDNVLSSVVQSLSETPESHACILDFLRVLPEEVTEGRKI 164
                 5667788888889**********************************99999987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.41
      FAM178 302 dlqqlllklLenikdWptk 320
                  + q+l+k+L+ i+ W +k
  CCE28093.1 420 GVTQCLSKVLQAIQLWMQK 438
                 5789************987 PP

>> Importin_rep_3  Importin 13 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.12   3.1e+02      39      67 ..     318     346 ..     297     351 .. 0.79
   2 ?   -2.2   0.0       1.7   4.4e+03      27      48 ..     610     631 ..     600     635 .. 0.82
   3 ?   -2.3   0.0       1.9   4.8e+03      11      34 ..     814     837 ..     812     838 .. 0.85
   4 ?    6.4   0.0    0.0036       9.2      29      68 ..     848     887 ..     839     893 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.12
  Importin_rep_3  39 lLvetvLeaiggesprsllehladvLlaL 67 
                      Lve+vLe+ + +  + ++eh+ d  + L
      CCE28093.1 318 PLVEAVLECAARDKECDVIEHTFDFWYEL 346
                     59******************998866655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
  Importin_rep_3  27 pelkqvvqedGklLvetvLeai 48 
                      + +q v+e+Gkl +   L+ i
      CCE28093.1 610 AKANQAVNEEGKLALADHLQLI 631
                     567899******9988887776 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.9
  Importin_rep_3  11 aaclFfveflsqceeipelkqvvq 34 
                     ++ +F+ ++ls  +++p   + +q
      CCE28093.1 814 STLHFLRDLLSYGGDNPATSEQIQ 837
                     566899***********9988776 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0036
  Importin_rep_3  29 lkqvvqedGklLvetvLeaiggesprsllehladvLlaLn 68 
                     +++ + ++G+ Lv++ + ++    pr +    + v+laL 
      CCE28093.1 848 VRNLLMAHGNDLVKQTMAGMMITFPRDCFADGSGVILALF 887
                     788999********************************95 PP

>> RVT_N  N-terminal domain of reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00015      0.39      12      51 ..     271     310 ..     265     314 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
       RVT_N  12 kVfkLqkrIykAsqegdikkvkkLqklLtkSlsakllAvr 51 
                 ++  L+ rI+kA++++d+++ k+L k+        ++A+ 
  CCE28093.1 271 QIIALRPRIAKAAEDEDVDALKSLTKVFSTAATSWVVAIA 310
                 6788***********************9999888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (971 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 6562.45
//
Query:       CCE28094.1  [L=252]
Description: related to methenyltetrahydrofolate synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-29  101.1   0.0    8.3e-29  100.8   0.0    1.1  1  5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family
  ------ inclusion threshold ------
       0.11   12.2   0.2       0.38   10.5   0.1    2.0  2  CysG_dimeriser  Sirohaem synthase dimerisation region


Domain annotation for each model (and alignments):
>> 5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   9.2e-33   8.3e-29       1     185 [.       9     229 ..       9     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 9.2e-33
                     HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHTSHHHHH-SEEEE----.TTS---HHHHHHHHHTTEEEEEEEECSSC........TEECEEEE CS
  5-FTHF_cyc-lig   1 KqelRkqllaalralseeevaaesealsqrieslkesqeakrvalyvsv.kgeidtkelikklleegkevllPrvrles........gslkvvrl 86 
                     Kq+lR+ ++++l+++s+e++ a+s ++++ +++++ + ea+r+++y+s+ +ge++t+ +++ +l  gk+v++P+++++           +++v l
      CCE28094.1   9 KQQLRNTVKQRLSSVSAESIVAQSGNIFESLKAFRPYVEARRISIYLSMpSGEVQTDVIVRHALASGKQVFVPYLHKSPldapdtpaRVMDMVHL 103
                     9************************************************99*************************9999******999****** PP

                     EECCCCCCCCCHCTS..SCE--TTECCBCGGG..........G-SEEEE--SEEE..TTS-..EE-SSTTHHHHHHHHHTS......T-SS--EE CS
  5-FTHF_cyc-lig  87 ttlkeedslesgkyg..lkePeeeeerelale..........kldlvlvPgvAfd..keGa..RlGkGkGyyDrflarlkg......gagdkplt 159
                      + ++ +sle+ ++g   + P++  +r+  l            ldl+l PgvAf+  + Ga  RlG+GkG+yD f++r+ +      + ++++l 
      CCE28094.1 104 KDMHDYESLERDRWGipSIDPATVHQRQRILGgpdahhsdqaGLDLMLLPGVAFEfdESGAvrRLGHGKGFYDYFMNRYLAktksldHDARSTLF 198
                     ***************5523466666665544456666677779**********855599*777**********8777765431003345566777 PP

                     EEE--GGGEES.....-----ST----SEEE CS
  5-FTHF_cyc-lig 160 vglaldeqlve.....rlPleehDvpvdevv 185
                      glal+eql++     ++P+ ++D  ++ +v
      CCE28094.1 199 YGLALTEQLLSggpgeQVPMGQYDRTLHGLV 229
                     8999999999766666888888888887665 PP

>> CysG_dimeriser  Sirohaem synthase dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   4.3e-05      0.38       4      24 ..       4      24 ..       2      25 .. 0.90
   2 ?   -2.8   0.0      0.62   5.6e+03       9      19 ..      39      49 ..      33      51 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.3e-05
                    HHHHHHHHHHHHHHHH-SSHH CS
  CysG_dimeriser  4 rLAelagrlRdrVkarlpdva 24
                    +LA+  ++lR++Vk+rl++v+
      CCE28094.1  4 PLAAAKQQLRNTVKQRLSSVS 24
                    799999************987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.62
                    HHHHHHHHHHH CS
  CysG_dimeriser  9 agrlRdrVkar 19
                    + ++R+ V+ar
      CCE28094.1 39 LKAFRPYVEAR 49
                    45566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1835.81
//
Query:       CCE28095.1  [L=1092]
Description: related to sexual differentiation process protein isp4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.1e-203  678.3  40.4   1.5e-203  677.9  40.4    1.1  1  OPT         OPT oligopeptide transporter protein
    0.00096   19.2   0.6     0.0049   16.9   0.6    2.2  1  DUF1453     Protein of unknown function (DUF1453)
  ------ inclusion threshold ------
        4.3    7.0   5.7         10    5.7   5.7    1.6  1  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
        5.4    6.2   6.2        8.9    5.5   6.2    1.2  1  NOA36       NOA36 protein


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  677.9  40.4  3.3e-207  1.5e-203       2     615 ..     318    1049 ..     317    1050 .. 0.98

  Alignments for each domain:
  == domain 1  score: 677.9 bits;  conditional E-value: 3.3e-207
         OPT    2 lTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk...................................lslnpgpf 63  
                  +T+R++ l++l+++lgs +n +f+lr+++v+i++++a ll +plg +++ +l++                                   ++ ++g++
  CCE28095.1  318 NTPRMWCLSVLFSILGSSTNLFFSLRYPSVAITPVIALLLVHPLGLLWDALLKRpddpdevfvdgvrtqttngpedsvarkkkrrtswrMWWAQGKW 414 
                  7***************************************************8888999************************************** PP

         OPT   64 tikEnvliqtmasaaatlalatglivvipalelygqsagfgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegee.... 156 
                  ++kE++++++ +++a+++a+at++iv+++++  y+q+a++ y++ll++s+q+lG+gfag+ R+flv+p+ +i+P +l++a+++++lhk++++     
  CCE28095.1  415 NEKEHACVYVSSNVAFGFAFATDVIVEQTQF--YNQTAPITYQLLLTISTQILGYGFAGMARRFLVRPSGMIWPGTLMSAAMFSTLHKQDNKPangw 509 
                  *******************************..*******************************************************9976699** PP

         OPT  157 .ksrlkfflivflgsfvwglfplylfpalssfswltwiapknvvlanlf....glgllpltfdwnviaayiGsglivplwvavnmliGavlswgili 248 
                   +sr+kff +v +g+f ++++p++l+pals+fs++tw+ap+nvv+anlf    glgl+p+tfdw +i+ y+G++l+vp+w+a+n+++G++++++i++
  CCE28095.1  510 tISRWKFFYVVWIGAFSFYFLPGLLMPALSYFSVITWFAPNNVVIANLFgvtsGLGLFPMTFDWAQIT-YVGNPLLVPFWAAMNVIGGLAVVMWIIA 605 
                  ********************************************************************.**************************** PP

         OPT  249 Pllyysngwypaylp.............ydvteildedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksa...... 326 
                  P++yysn++y++ylp             y+v++il+ ++++d+e+y++y+ ++l+ ++ l+y++qfa++++l++ht+++hgkdi++++k        
  CCE28095.1  606 PIFYYSNVLYTSYLPmlsaavfdntgkvYNVSKILTPEFLFDKEAYQSYSRVFLPVTYMLSYGMQFAGLAALLTHTFCWHGKDIWRTWKRSweearq 702 
                  ************************************************************************************************* PP

         OPT  327 ...............................................rsprteeddrhrrlmrkykdvpmwwylallvlslvigiivvealftqlpv 376 
                                                                   +  +++d+h rlm +ykd p +wyl+++v + +ig++vve+++ +lp+
  CCE28095.1  703 qtgkptyrpvsevqeqaqaqaqsqatsspatglgsehyhdmsasapnFDNLLSREDIHCRLMARYKDAPLSWYLVTFVSMTAIGMFVVEYYPIHLPW 799 
                  *********************************999999988766555599********************************************** PP

         OPT  377 wglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmqDLKtGhllkasPraqfvaqliGtlvga 473 
                  +glllal+++++++i+++ii+++t++  +s+i++++qli+ga++pgrp+an+vf +++y++ aq+++f++DLK+Gh++k++Pr++f++q+++tlv++
  CCE28095.1  800 YGLLLALAIGAIFFIPNGIIMAVTNQ--HSSIYLVCQLICGAVFPGRPIANMVFVTYGYISSAQGIKFASDLKLGHYMKIPPRIMFLVQVVATLVSS 894 
                  **************************..********************************************************************* PP

         OPT  474 vvniavlkllvkaygdictadasnaftaPqakvfaavavl..lvggk.........kglpwafllgavapfilllllkkfpkkstarklplplafav 559 
                  v++i+vl++++ +++ ict++a n ft+P a+v+++ ++l  +vg++         ++l w+f lga +p++l+l+ ++ + +s +rk++lp++f+ 
  CCE28095.1  895 VTQIGVLNWMFANVKHICTPEALNGFTCPIARVHFNGSILwgVVGPGeffgpnaiyRSLVWCFPLGALLPIPLWLYARNKR-RSVFRKVNLPVIFGA 990 
                  *****************************************999999********************************66.9************** PP

         OPT  560 gfylppsl.....sialligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiafl 615 
                    ++pp++     ++  +++++++n+++krr+++w++ky+++l+a+L++G+a+ +v+++f 
  CCE28095.1  991 MSWIPPATglnfsVW--AVVCYLFNYVIKRRANAWWSKYTMTLSAALDSGLAFGIVVVFFG 1049
                  ********9987555..667***************************************96 PP

>> DUF1453  Protein of unknown function (DUF1453)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.6   1.1e-06    0.0049      30      86 ..     773     831 ..     759     843 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
     DUF1453  30 kiilPplfmstGalmfvfp..efrltllevleallvGalfsipliktskfevrdgkiyl 86 
                  + l+ ++ +t++ mfv++  +++l++  +l al++Ga+f ip +  ++++ +++ iyl
  CCE28095.1 773 SWYLVTFVSMTAIGMFVVEyyPIHLPWYGLLLALAIGAIFFIPNGIIMAVTNQHSSIYL 831
                 566777888888877776622689*********************************98 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.7    0.0023        10     111     145 ..     244     279 ..     153     285 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0023
                 ----------------...------------------- CS
  Cwf_Cwc_15 111 idaddedseeeeeeee...eesdddsdsdsdddddede 145
                 +d+ ++++  + e  +     +ddd d+++dddd+ede
  CCE28095.1 244 VDNGKDADGMNPE--DgllFYNDDDTDDNDDDDDEEDE 279
                 3333333322222..24453444455555555555555 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.2     0.002       8.9     227     296 ..     200     282 ..     182     293 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.002
       NOA36 227 slstrslkfgrqkqadgsddddddeedsdydaylkalasg.........ddeddegded.....ddddddeedddeeeddedee 296
                 sls+r      q+ +  s++ d+ +  s+ d+ ++   +          +d d  + ed     +ddd+d++ddd++e+de  e
  CCE28095.1 200 SLSSRRSVISWQS-SRRSEEMDGAALVSGLDGRFGLAEAPlasemvdngKDADGMNPEDgllfyNDDDTDDNDDDDDEEDEGGE 282
                 5555555555555.3345555555555555555443332233323322211111111111111112222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1092 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 7492.70
//
Query:       CCE28096.1  [L=898]
Description: probable 26S proteasome regulatory particle chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.1e-112  374.0   2.8   8.1e-112  373.6   2.3    1.5  2  RPN1_RPN2_N      RPN1/RPN2 N-terminal domain
    1.4e-28   98.7   0.0    2.6e-28   97.8   0.0    1.5  1  RPN1_C           26S proteasome non-ATPase regulatory subunit
    1.1e-21   76.1  12.6    4.6e-06   26.8   0.1    8.4  9  PC_rep           Proteasome/cyclosome repeat
    2.3e-08   34.3   0.4      0.014   15.8   0.0    4.4  4  HEAT_2           HEAT repeats
  ------ inclusion threshold ------
       0.02   14.8   0.1        2.6    8.0   0.0    3.2  2  AbbA_antirepres  Antirepressor AbbA
      0.074   13.4   0.0         32    5.2   0.0    3.5  3  HEAT             HEAT repeat
       0.37   10.9   3.2       0.76    9.8   3.2    1.4  1  Pinin_SDK_memA   pinin/SDK/memA/ protein conserved region


Domain annotation for each model (and alignments):
>> RPN1_RPN2_N  RPN1/RPN2 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.6   2.3  3.2e-115  8.1e-112       1     309 []      56     355 ..      56     355 .. 1.00
   2 ?   -4.0   0.0         3   7.6e+03     179     202 ..     724     747 ..     719     758 .. 0.74

  Alignments for each domain:
  == domain 1  score: 373.6 bits;  conditional E-value: 3.2e-115
  RPN1_RPN2_N   1 LellverlkdadaelaklaLeaLkeeirtstssmTSvPkPLKfLrphyetlkeiyetlkkskakklladilsvlamtlsdegkresLkyrlegskedi 98 
                  Le+lverl+++++el+++aLea+k++i+tstssmT+vPkPLKfLrphyetl+++ye+++  ++k++lad+lsv++mt+sde+++++Lkyrl + k+d+
   CCE28096.1  56 LEMLVERLTESNTELYQPALEAMKTSIKTSTSSMTAVPKPLKFLRPHYETLTKLYEQWPAGENKTSLADVLSVIGMTFSDEDRQDTLKYRLLAPKSDM 153
                  8************************************************************************************************* PP

  RPN1_RPN2_N  99 gsWGheYvrhLaaeiaeeyqerqeeekeeetkekkkkvkellelvkeivpfllkhnaeaeAvDLllEvekleklvklvdeenyqrvclYLlscakyla 196
                   sWGheYvrhLa ei+e y +r  ++         + + el++l+  +vp ++k naea+AvDL+ E+e +e++ k+vde++++rvclY++s++++l+
   CCE28096.1 154 LSWGHEYVRHLALEIGEVYGKRIGAD---------EPTAELIDLALLLVPQFIKSNAEADAVDLMSELEIIEEIPKFVDENTFSRVCLYMVSMVNLLT 242
                  ************************99.........899************************************************************ PP

  RPN1_RPN2_N 197 epddvellrvafeiyrklkkyseaLrvalrlndkelvkevfkaaedklvkkQlayllarqqvkleleeledededlneilsneklsehfkaLakdLdv 294
                  +pd+ ++lr+a++iy+++k+  +a+++a+rl d +l++ +f++ae++ +kkQla+l+arq++ l+l e +d++++++e++sn kls+hfkaL+++L++
   CCE28096.1 243 YPDNESFLRTAHDIYMQYKQIAQAIVLAIRLHDVDLIRADFDKAESPALKKQLAFLVARQRILLDLPESTDDEQEISECVSNLKLSDHFKALGRELNL 340
                  ************************************************************************************************** PP

  RPN1_RPN2_N 295 lepktpediYKshLe 309
                  l+pkt ediYKshLe
   CCE28096.1 341 LDPKTTEDIYKSHLE 355
                  **************7 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3
  RPN1_RPN2_N 179 enyqrvclYLlscakylaepddve 202
                  +n +r  + L ++a+y  + +d+ 
   CCE28096.1 724 TNNARLAQLLRQLASYYHRDQDAL 747
                  678889999999998887777763 PP

>> RPN1_C  26S proteasome non-ATPase regulatory subunit RPN1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0     1e-31   2.6e-28       1      54 []     841     894 ..     841     894 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 1e-31
      RPN1_C   1 VgqaGkpktItGfqThttPVlLaageRAELateeYiplssvLEgivilkknpdy 54 
                 VgqaG+pktItG+qT++tPVlLa+geRAEL++eeYi+l+ +LEg+vilkknp +
  CCE28096.1 841 VGQAGRPKTITGWQTQSTPVLLAYGERAELEDEEYISLNGTLEGLVILKKNPAW 894
                 9***************************************************98 PP

>> PC_rep  Proteasome/cyclosome repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         1   2.6e+03       3      34 ..     413     443 ..     411     444 .. 0.85
   2 !    9.0   0.1   0.00076         2       1      22 [.     445     468 ..     445     483 .. 0.84
   3 !   26.8   0.1   1.8e-09   4.6e-06       1      33 [.     484     516 ..     484     517 .. 0.94
   4 !   12.6   0.0   5.8e-05      0.15       2      30 ..     522     550 ..     521     554 .. 0.90
   5 ?    1.9   0.0      0.14   3.6e+02       4      22 ..     565     585 ..     564     593 .. 0.68
   6 ?   -3.2   0.0       5.9   1.5e+04       9      21 ..     602     614 ..     602     631 .. 0.69
   7 ?    2.8   0.0     0.071   1.8e+02       4      33 ..     680     709 ..     678     710 .. 0.87
   8 !   21.4   0.1   8.9e-08   0.00023       1      29 [.     712     740 ..     712     744 .. 0.92
   9 ?    0.3   0.1      0.45   1.2e+03       5      15 ..     753     763 ..     752     766 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1
                 HHHHHHHCTTSTCHHHHHHHHHHHHHHSSHHH CS
      PC_rep   3 llALGlihaGsgneeaislLkpylsdtsaevr 34 
                 +++LG ++++ + e +++  ++y ++ + e++
  CCE28096.1 413 VASLGTLMLW-DIENGLDKVDKYTYSEEPEIS 443
                 6788999999.8888**********9999986 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00076
                 HHHHHHHHHCTTSTCH..HHHHHH CS
      PC_rep   1 GAllALGlihaGsgne..eaislL 22 
                 GA lA+G+++ G++ +  +a++lL
  CCE28096.1 445 GAMLAIGIMNSGVRLDsePALALL 468
                 9***********999999999998 PP

  == domain 3  score: 26.8 bits;  conditional E-value: 1.8e-09
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHHSSHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdtsaev 33 
                 +++++LGl +aGs+ ee+++lL+p++ d+s e+
  CCE28096.1 484 ACIMGLGLSYAGSNKEEVLELLLPIIGDSSQEM 516
                 69************************9999876 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 5.8e-05
                 HHHHHHHHCTTSTCHHHHHHHHHHHHHHS CS
      PC_rep   2 AllALGlihaGsgneeaislLkpylsdts 30 
                 A+l+LGl++ Gs  +e+++ + + l d +
  CCE28096.1 522 AALSLGLVFVGSSHSEVTEAIVTTLMDEE 550
                 9**********99999****999998875 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.14
                 HHHHHHCTTSTCH..HHHHHH CS
      PC_rep   4 lALGlihaGsgne..eaislL 22 
                 l+LGl++ G   e   +++ L
  CCE28096.1 565 LGLGLLYFGRQEEvdVILETL 585
                 9********444444444444 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 5.9
                 HCTTSTCHHHHHH CS
      PC_rep   9 ihaGsgneeaisl 21 
                 i+a+ g+++++++
  CCE28096.1 602 ICAWAGTGAVLKI 614
                 7888888866554 PP

  == domain 7  score: 2.8 bits;  conditional E-value: 0.071
                 HHHHHHCTTSTCHHHHHHHHHHHHHHSSHH CS
      PC_rep   4 lALGlihaGsgneeaislLkpylsdtsaev 33 
                 lA+Gli   +    +++ L+ y +d++ ev
  CCE28096.1 680 LAMGLISSSNPQMKIYDTLSRYSHDNDPEV 709
                 89999999988889********99999875 PP

  == domain 8  score: 21.4 bits;  conditional E-value: 8.9e-08
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdt 29 
                 +A++A+G+++aG++n ++ +lL++++s++
  CCE28096.1 712 NAIFAMGMLGAGTNNARLAQLLRQLASYY 740
                 59***********************9875 PP

  == domain 9  score: 0.3 bits;  conditional E-value: 0.45
                 HHHHHCTTSTC CS
      PC_rep   5 ALGlihaGsgn 15 
                 ++Gl+h+G g+
  CCE28096.1 753 SQGLLHMGKGT 763
                 89******886 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.4   6.1e+03       3      25 ..      58      79 ..      51     100 .. 0.59
   2 !   15.8   0.0   5.5e-06     0.014       8      60 ..     474     533 ..     465     556 .. 0.74
   3 !   12.6   0.0   5.4e-05      0.14      17      70 ..     675     736 ..     629     747 .. 0.73
   4 ?   -3.4   0.0       5.2   1.3e+04      16      33 ..     832     850 ..     830     851 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.4
      HEAT_2  3 aLlqalendpdpevrraairaLg 25
                 L+++l + +++e+ + a++a+ 
  CCE28096.1 58 MLVERL-TESNTELYQPALEAMK 79
                445555.4555555555555554 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 5.5e-06
      HEAT_2   8 lendpdpevrraairaLg....rignpealpaLvellededpavRraaaeaLg....aigd 60 
                 l ++++p +r a i+ Lg      + +e+l++L++++ d++ + ++ a  aL+     +g+
  CCE28096.1 474 L-QHSNPLIRTACIMGLGlsyaGSNKEEVLELLLPIIGDSSQEMQMSAMAALSlglvFVGS 533
                 6.79**************987777889**********999988888887777433445553 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 5.4e-05
      HEAT_2  17 rraairaLgrignp....ealpaLvellededpavRraaaeaLgaig....dpealpaLkel 70 
                 r+a+  a+g i +     ++ ++L ++  d dp+v  +a+ a+g +g    + + +++L++l
  CCE28096.1 675 RKAVPLAMGLISSSnpqmKIYDTLSRYSHDNDPEVAINAIFAMGMLGagtnNARLAQLLRQL 736
                 55555566644332224677889999999999999999999999998333212233333333 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 5.2
      HEAT_2  16 vrr.aairaLgrignpeal 33 
                 vr  +a+++ g+ g p+++
  CCE28096.1 832 VRVgQAVDVVGQAGRPKTI 850
                 6655788888888887764 PP

>> AbbA_antirepres  Antirepressor AbbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.041   1.1e+02      27      53 ..     205     230 ..     200     234 .. 0.84
   2 ?    8.0   0.0     0.001       2.6      35      51 ..     421     437 ..     416     438 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.041
                      HHHHHHHHHHHHHTT----SCHHHHHH CS
  AbbA_antirepres  27 AlellssElaDIEnGtKkvDekrYkkl 53 
                      A++l+ sEl  IE   K vDe+++ ++
       CCE28096.1 205 AVDLM-SELEIIEEIPKFVDENTFSRV 230
                      66665.7****************9875 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.001
                      HHHHHTT----SCHHHH CS
  AbbA_antirepres  35 laDIEnGtKkvDekrYk 51 
                      l DIEnG  kvD+ +Y 
       CCE28096.1 421 LWDIENGLDKVDKYTYS 437
                      67*************95 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.028        73       9      25 ..     474     490 ..     471     491 .. 0.91
   2 ?   -2.3   0.0       3.2   8.2e+03       2      24 ..     502     524 ..     501     525 .. 0.83
   3 ?    5.2   0.0     0.012        32       3      28 ..     696     721 ..     694     724 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.028
                 HT-SSHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLg 25 
                 l++++p +R a++  Lg
  CCE28096.1 474 LQHSNPLIRTACIMGLG 490
                 79***********9998 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.2
                 HHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaL 24 
                 l lll  + D+s e  ++A  aL
  CCE28096.1 502 LELLLPIIGDSSQEMQMSAMAAL 524
                 78899999999999999998887 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.012
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                 ++l +  +D++peV  +A+ a+g l 
  CCE28096.1 696 DTLSRYSHDNDPEVAINAIFAMGMLG 721
                 66778889**************9885 PP

>> Pinin_SDK_memA  pinin/SDK/memA/ protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0003      0.76      33     107 ..      14      87 ..       2      96 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0003
  Pinin_SDK_memA  33 erraeiekrleekakeekeeleerkrekreeleeerraeqkelraleeklelkelmetwhenkkalanflrTkte 107
                      + + +e+ ++ek+    ++++++ +  +eel ee ++ + el++l e+l ++ + e  +  ++a++ +++T+t+
      CCE28096.1  14 GKGKAVENPQDEKQVMNGKKDDDKDKGSEEELSEEDQQLKSELEMLVERL-TESNTELYQPALEAMKTSIKTSTS 87 
                     57789999999***999999999999999**************9997777.55699999*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       963  (0.0537119); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.40
# Mc/sec: 6688.21
//
Query:       CCE28097.1  [L=428]
Description: probable RIO2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-41  141.4   0.1    4.9e-40  137.1   0.1    2.2  1  RIO1             RIO1 family
    7.5e-31  106.2   0.1    1.5e-30  105.2   0.1    1.5  1  Rio2_N           Rio2, N-terminal
    1.4e-06   28.4   0.2     0.0084   16.1   0.1    2.7  2  APH              Phosphotransferase enzyme family
    8.8e-06   25.2   0.6      0.052   12.9   0.0    2.7  3  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.053   13.2  11.3      0.086   12.6  11.3    1.3  1  Cwf_Cwc_15       Cwf15/Cwc15 cell cycle control protein
      0.054   13.5   6.1        0.1   12.6   6.1    1.4  1  RXT2_N           RXT2-like, N-terminal
        1.6    8.4   4.7          3    7.5   4.7    1.6  1  FAM176           FAM176 family
        2.2    8.3   6.4        3.9    7.5   6.4    1.3  1  PGA2             Protein trafficking PGA2
        3.2    7.9  14.4       0.17   12.1   9.1    1.6  2  RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc3
        4.6    7.7   9.8         12    6.4   9.8    1.6  1  PBP1_TM          Transmembrane domain of transglycosylase PBP


Domain annotation for each model (and alignments):
>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.1   2.7e-43   4.9e-40       2     181 ..     110     292 ..     109     297 .. 0.90

  Alignments for each domain:
  == domain 1  score: 137.1 bits;  conditional E-value: 2.7e-43
                 EEEEEETTTEEEEEEEE-S---SS-HHHHCTTTSTTSTCG--GS-HHHHHHHHHHHHHHHHHHHHHTT--S--EEEEETTEEEEE--EETTEEGGBHHH CS
        RIO1   2 VyhavsedgkevaiKiyktstteFkkrkkyvsgekrfkdrksktnprklvklwaekEfrnLkrleeagvpvPkpielkrhvlvmefigedgvaapklkd 100
                 + ++++e+g++ ++Ki+++++ +F+++k+ +++ k+    + + ++ +l++l+a kE++ +k+l+++g+pvP p++  rh +vm +++   +++ +++ 
  CCE28097.1 110 IMVVADETGTQRVLKIHRLGRISFRTVKSNRDYLKN----RASGSWMYLSRLAAMKEYAFMKALYAEGFPVPVPLAQSRHTIVMTLVD--AFPLRQIST 202
                 66788999**************************99....6789********************************************..********* PP

                 CG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTE.............EEE--GTTEEETTSTTHHHHHHHHHHHHHHHHHTTC-- CS
        RIO1 101 veeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedk.............vviIDvsQaveldhpnalefLerDveniikfFrrkgve 181
                 v+   + ++ly++++  ++  ++++gl+H+D++e+N+l++e+k             +v+ID++Q+v+++h+na+++++rDve+i +fF+r++  
  CCE28097.1 203 VP---NPASLYADLIG-LILRLANHGLIHGDFNEFNILIKEEKtvsqdgsesirlePVVIDFPQMVSMEHQNAEMYFDRDVECIKRFFSRRFHF 292
                 **...8999*******.566666****************9987344444444444458********************************9865 PP

>> Rio2_N  Rio2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.1   8.3e-34   1.5e-30       1      82 []       8      92 ..       8      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 8.3e-34
      Rio2_N  1 lryLskedfrvLtavEmgmrnhevVptelieeisrlk..eeevkkrlsrllkaklisr.ktakydGYkLtyeGyDyLALktlvkr 82
                +r L +ed++vL avEmg+rnhe+Vpt lie++srl+  +++v+k++s l+k +li+r k+akydGY+Lty+G+DyLAL+t++ r
  CCE28097.1  8 MRHLAAEDWKVLLAVEMGSRNHELVPTVLIEKLSRLRggASGVHKSISALAKVGLIARvKEAKYDGYRLTYGGLDYLALHTHATR 92
                799**********************************9999****************************************9877 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   4.7e-06    0.0084      33     106 ..     155     221 ..      98     224 .. 0.68
   2 !   11.5   0.0   0.00012      0.21     163     184 ..     220     241 ..     208     260 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.7e-06
                 -HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHH CS
         APH  33 aaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalh 106
                 +   + +e+a++++L + g+pvP++la    +  + +++ l+   p r++++    +    l+++l+ ++ +l 
  CCE28097.1 155 SRLAAMKEYAFMKALYAEGFPVPVPLA----QSRHTIVMTLVDAFPLRQIST---VPNPASLYADLIGLILRLA 221
                 34567799*******************....77777799***********99...7777788888887777775 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00012
                 SS-EEEE-SS-SGGGEEEC..T CS
         APH 163 elptvllHgDlhpgNllvdpdd 184
                    ++l+HgD++  N+l+++++
  CCE28097.1 220 LANHGLIHGDFNEFNILIKEEK 241
                 45799**************554 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.9e-05     0.052      51      82 ..     151     183 ..     113     195 .. 0.85
   2 !    9.8   0.0   0.00026      0.47     130     167 ..     216     261 ..     202     296 .. 0.74
   3 ?   -2.2   0.1       1.2   2.2e+03     174     203 ..     304     333 ..     301     336 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
         Kdo  51 fk.lgrtravrEfrllkrLeeagvavpkpvaag 82 
                 +  l+r+ a++E++ +k+L+++g++vp p+a  
  CCE28097.1 151 WMyLSRLAAMKEYAFMKALYAEGFPVPVPLAQS 183
                 55599************************9975 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00026
         Kdo 130 liaklhragvnHadlyaknillqqee........eeeaeiwliDld 167
                 li +l + g+ H+d++  nil+++e+        +  +e ++iD+ 
  CCE28097.1 216 LILRLANHGLIHGDFNEFNILIKEEKtvsqdgseSIRLEPVVIDFP 261
                 6889999******************988765532233455677775 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.2
         Kdo 174 radrwrekdLarLkrsflkielteadweal 203
                 ++++ ++ +L rL   ++++++t++  ++l
  CCE28097.1 304 AKKKLKKSELTRLDATVEASGFTKKMLKDL 333
                 578899999999999999999999877776 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  11.3   4.8e-05     0.086      99     149 ..     326     374 ..     287     380 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.8e-05
                 ---------..---------------------------------------- CS
  Cwf_Cwc_15  99 rrkeelleeareidaddedseeeeeeeeeesdddsdsdsdddddedetaeL 149
                  +k  +l++ +++ ++  +++e + ++ee sd+dsd+dsddd+d+d+++ L
  CCE28097.1 326 TKK--MLKDLEAAIRERAEKKEASGHSEELSDNDSDDDSDDDSDDDDDERL 374
                 222..4444333333444444444555577777888888888888888877 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   6.1   5.6e-05       0.1      18      88 ..     307     381 ..     302     389 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.6e-05
      RXT2_N  18 rLnsskgdeelkkkveyngserkilsrnpierskrkk...kekekeekeeeeedeegdeededdddee..eaeaae 88 
                 +L++s+    l  +ve +g ++k l+  ++ +++r +    + ++ee +++++d+++d++++dddde+   +e++e
  CCE28097.1 307 KLKKSEL-TRLDATVEASGFTKKMLKDLEAAIRERAEkkeASGHSEELSDNDSDDDSDDDSDDDDDERlsYSENEE 381
                 4544444.456899***********998888866666433222223333333444433333333333365444444 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.7    0.0016         3      55      88 ..     340     374 ..     304     420 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0016
      FAM176  55 kkkkkklkeeseka.sededeeeeeeeedssesea 88 
                 +++kk+ + +se+  ++d+d++++++++d+ +++ 
  CCE28097.1 340 RAEKKEASGHSEELsDNDSDDDSDDDSDDDDDERL 374
                 22222222222221244444444444444433332 PP

>> PGA2  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.4    0.0022       3.9      41     124 ..     325     408 ..     318     418 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0022
        PGA2  41 qekqrekeeekeeaeekaakkakvspnalRggeaksgesdedddegeeeedvakasgvpewgkkarkrqkkvlkkleeeaeerk 124
                 ++k++ k+ e++  e++++k+a    ++l + ++++++ d++dd+ +e    +++++++  g    ++q  +l++ +ee+  ++
  CCE28097.1 325 FTKKMLKDLEAAIRERAEKKEASGHSEELSDNDSDDDSDDDSDDDDDERLSYSENEEGEPVGGVLGQQQTSILENALEEHGDEE 408
                 678888888888888888889999999999999874444444444444455677777777888888888888888888887333 PP

>> RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2       7.1   1.3e+04     216     222 ..     270     276 ..     270     278 .. 0.91
   2 ?   12.1   9.1   9.4e-05      0.17     158     214 ..     309     371 ..     281     382 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 7.1
  RNA_pol_3_Rpc31 216 NaekYFD 222
                      Nae YFD
       CCE28097.1 270 NAEMYFD 276
                      9*****9 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 9.4e-05
  RNA_pol_3_Rpc31 158 k........eadeedeegkelleklkelaeeeddeeekkekedeeeee..eeeeddefddddedggD 214
                      k        ++ e +  +k++l+ l++   e  +    k++   + ee  +++ dd++ddd++d++D
       CCE28097.1 309 KkseltrldATVEASGFTKKMLKDLEAAIRERAE----KKEASGHSEElsDNDSDDDSDDDSDDDDD 371
                      1234665554446666677788888865555555....23333333334667778888877776666 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   9.8    0.0066        12      20      56 ..     341     375 ..     330     386 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0066
     PBP1_TM  20 parkkasrrrrrdddyddeyddeedDdddddeeeevp 56 
                 +++k+as   + ++  d++ dd++dDd ddd++e ++
  CCE28097.1 341 AEKKEASG--HSEELSDNDSDDDSDDDSDDDDDERLS 375
                 23333333..223444445566666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1099  (0.0612973); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.37
# Mc/sec: 3426.60
//
Query:       CCE28098.1  [L=516]
Description: related to single-stranded DNA-binding protein MSSP-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-16   58.8   0.0    1.8e-08   34.1   0.0    2.3  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.3e-09   7.7e-05       1      60 [.     248     305 ..     248     310 .. 0.92
   2 !   34.1   0.0     1e-12   1.8e-08       1      65 [.     333     396 ..     333     398 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.3e-09
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHT CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealn 60 
                 +++++L+p++++  L+++ s fG++++ k + d    +  f+f +F +  d e +++ ++
  CCE28098.1 248 VYIRGLHPTTDDGLLYKFTSRFGRVETSKAIID--TGTGAFGFAKFCDVKDSEMCIRGFH 305
                 8*******************************9..66678***************99765 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 1e-12
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEET CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklg 65 
                 l+++nLp+++te eL ++F ++    s k+ rd+ g+s+g++f +Fes++  +++++++ng  +g
  CCE28098.1 333 LYISNLPKTLTEVELGAIFMGCTIL-SSKILRDSMGNSRGVGFARFESRDICDEIIRKYNGIGIG 396
                 8*********************665.***********************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3634.60
//
Query:       CCE28099.1  [L=93]
Description: uncharacterized protein CPUR_01573 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0046   17.2   4.3     0.0046   17.2   4.3    1.1  1  RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc3
  ------ inclusion threshold ------
      0.017   14.5   0.4      0.019   14.3   0.4    1.2  1  DUF4820          Domain of unknown function (DUF4820)
      0.017   15.0   3.8       0.02   14.8   3.8    1.2  1  Myc_N            Myc amino-terminal region
      0.089   12.5  12.1      0.096   12.4  12.1    1.0  1  BSP_II           Bone sialoprotein II (BSP-II)
       0.36   10.1   6.8       0.41    9.9   6.8    1.1  1  NOA36            NOA36 protein
       0.57    9.8   8.7        0.7    9.5   8.7    1.1  1  FAM176           FAM176 family
        2.5    8.6   9.9        3.1    8.2   9.9    1.2  1  CENP-B_dimeris   Centromere protein B dimerisation domain
        4.6    6.6  10.4        5.4    6.4  10.4    1.1  1  PBP_sp32         Proacrosin binding protein sp32
        6.2    5.6  16.3        7.2    5.4  16.3    1.0  1  Radial_spoke     Radial spokehead-like protein
        8.5    4.5   8.0        9.8    4.3   8.0    1.0  1  CDC45            CDC45-like protein
        8.6    6.8   8.0         12    6.4   8.0    1.1  1  S-antigen        S-antigen protein


Domain annotation for each model (and alignments):
>> RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   4.3   2.8e-06    0.0046     187     210 ..      63      86 ..      13      91 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.8e-06
  RNA_pol_3_Rpc31 187 kkekedeeeeeeeeeddefdddde 210
                      ++++e+eeeeeeeee++e ++++e
       CCE28099.1  63 TQKHEEEEEEEEEEEEEEEEEEEE 86 
                      233333333332222222222332 PP

>> DUF4820  Domain of unknown function (DUF4820)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.4   1.2e-05     0.019     141     206 ..      26      86 ..       4      92 .. 0.46

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
     DUF4820 141 ltLstliCsrpgrsipvss.eldnsartlterksekesaesseskkrnkeerdaeseeessedeeee 206
                  tL   iC rp    p+ss +  ++     +  s++      +++k+++ee+++e+eee++e+eeee
  CCE28099.1  26 ATLDLTIC-RPAARAPSSSfQGGHECCDEFVIVSKNL-----RTQKHEEEEEEEEEEEEEEEEEEEE 86 
                 67888999.8886666443022232221111111111.....1111111111111111111111222 PP

>> Myc_N  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   3.8   1.2e-05      0.02     218     253 ..      46      81 ..      13      89 .. 0.45

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.2e-05
       Myc_N 218 assssssdskalssseedvlsesdeeeeeeeeeeee 253
                 + +++  +   +s++ +++++e++eeeeeeeeeeee
  CCE28099.1  46 GGHECCDEFVIVSKNLRTQKHEEEEEEEEEEEEEEE 81 
                 233333333222333333333333222222222222 PP

>> BSP_II  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4  12.1   5.9e-05     0.096     127     153 ..      62      88 ..      34      91 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.9e-05
      BSP_II 127 eekatkeeesdeeeeeeeeeeneeeea 153
                 +++ ++eee++eeeeeeeeee+eeeea
  CCE28099.1  62 RTQKHEEEEEEEEEEEEEEEEEEEEEA 88 
                 333333334444444444445555555 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.8   0.00025      0.41     277     297 ..      66      86 ..      37      91 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00025
       NOA36 277 ddddddeedddeeeddedeee 297
                 ++++++ee+++eee++e+eee
  CCE28099.1  66 HEEEEEEEEEEEEEEEEEEEE 86 
                 111111111111111111111 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   8.7   0.00043       0.7      56      83 ..      60      87 ..      48      93 .] 0.37

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00043
      FAM176 56 kkkkklkeesekasededeeeeeeeeds 83
                + +++++ee+e+++e+e+eeeeeeee++
  CCE28099.1 60 NLRTQKHEEEEEEEEEEEEEEEEEEEEE 87
                2222222322222222222222333222 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   9.9    0.0019       3.1      17      38 ..      66      87 ..      53      93 .] 0.50

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0019
  CENP-B_dimeris 17 deeeeeeeedeededeeddedd 38
                     eeeeeeee+ee+e+ee++e++
      CCE28099.1 66 HEEEEEEEEEEEEEEEEEEEEE 87
                    3444444443333333333333 PP

>> PBP_sp32  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  10.4    0.0033       5.4     204     232 ..      57      87 ..      41      92 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0033
    PBP_sp32 204 ekkqeqleehkteekkkqeeqeeee..keee 232
                   k  ++++h+ ee+++ ee eeee  +eee
  CCE28099.1  57 VSKNLRTQKHEEEEEEEEEEEEEEEeeEEEE 87 
                 4556667778777766666555555223444 PP

>> Radial_spoke  Radial spokehead-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  16.3    0.0044       7.2     360     382 ..      65      87 ..      47      92 .. 0.46

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0044
  Radial_spoke 360 eeeeeeeeeeeeeeeeeeeeepE 382
                   ++eeeeeeeeeeeeeeeeeee+E
    CCE28099.1  65 KHEEEEEEEEEEEEEEEEEEEEE 87 
                   22223333333323333333333 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   8.0     0.006       9.8     131     152 ..      65      85 ..      44      91 .. 0.39

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.006
       CDC45 131 esdeedeeeeeeddddeeeeee 152
                 + +ee+eeeeee+++ eeeeee
  CCE28099.1  65 KHEEEEEEEEEEEEE-EEEEEE 85 
                 111111111111111.111111 PP

>> S-antigen  S-antigen protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   8.0    0.0072        12      49      77 ..      58      86 ..      48      91 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0072
   S-antigen 49 kkngkgqkyedleeeenddeedsnseesn 77
                 kn + qk+e+ eeee+++ee+ ++ee +
  CCE28099.1 58 SKNLRTQKHEEEEEEEEEEEEEEEEEEEE 86
                68888899888777766666555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2176  (0.121368); expected 358.6 (0.02)
Passed bias filter:                     1147  (0.0639746); expected 358.6 (0.02)
Passed Vit filter:                       247  (0.0137766); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 739.22
//
Query:       CCE28100.1  [L=215]
Description: uncharacterized protein CPUR_01574 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1702.90
//
Query:       CCE28101.1  [L=692]
Description: probable NCP1-NADPH-cytochrome P450 reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-64  215.3   0.0    1.4e-63  214.5   0.0    1.4  1  FAD_binding_1  FAD binding domain
    6.3e-34  117.2   0.9    1.2e-33  116.3   0.9    1.5  1  Flavodoxin_1   Flavodoxin
    1.6e-20   73.8   0.0    1.3e-19   70.9   0.0    2.2  2  NAD_binding_1  Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.5   0.0   2.3e-67   1.4e-63       2     222 .]     269     488 ..     268     488 .. 0.98

  Alignments for each domain:
  == domain 1  score: 214.5 bits;  conditional E-value: 2.3e-67
                    --BTTB-EEEEEEEEEE---.-SS--EEEEEEE-TTBT----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSSSEEH CS
  FAD_binding_1   2 pfdakkvflakvlknreLtkpesernvihveldisdsglkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprleptTl 97 
                    pf+++++++a+++++reL++  ++rn+ih+e+d+s+s+l+Y+tGdhl+++p N+ e+V+ +l ++gl++k+++v+++k+l++  + k p+++ptT+
     CCE28101.1 269 PFNSHNPYIAPIVESRELFS-AKDRNCIHMEIDVSGSNLTYQTGDHLAIWPTNPGEEVDRFLDVIGLKEKRNNVISVKPLEP--TAKVPFPTPTTY 361
                    899*****************.99**********************************************************7..8*********** PP

                    HHHHHHTB--SS---HHHHHHHGGG-SSHHHHHHHHHHHH-..HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S-TT CS
  FAD_binding_1  98 rqalkyylditgppskqlleaLaefaseeeekqkLekLssd..egakeykelklneartllevleefpsvklplefLlevlpqLkpRyYSiSsssk 191
                    +++++y+l+i+gp+s+q+   +a f ++ee k+++++L+sd  +++++      n ar l ++ ++ +++++p++ ++e l +L+pRyYSiSsss 
     CCE28101.1 362 DAIVRYHLEICGPVSRQFAATVAAFSPDEEIKAEMTRLGSDkqYFHEKTGPHFYNIARFLEAIGKGQKWSNIPFSAFIEGLTKLQPRYYSISSSSL 457
                    *****************************************98899999888899999999*********************************** PP

                    TTTTEEEEEEE--EE---SSS--EE-HHHHH CS
  FAD_binding_1 192 vhpdevhltvvVveyetdgegrirkGvcsny 222
                    v+p+++ lt+vV++ +  g  + + Gv++ny
     CCE28101.1 458 VQPKKISLTAVVESQKIVGRMEPFRGVATNY 488
                    ***************999999999*****98 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.9   2.1e-37   1.2e-33       1     143 []      67     212 ..      67     212 .. 0.95

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 2.1e-37
                   EEEETSSSHHHHHHHHHHHHHHH.TTTEEEEEEEEGTTSC.GGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHH...GCCSTTTTEEEEE CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelge.hgfnadvvslsdydes.lseieeealllvvtsTfgnGdppengesffqdllelkgde...ledgdlsgvrfav 92 
                   i+YgS+tG++e++A +la+e ++  g++++v +l++yd++ l+ +++++++++v +T+g+G+p++n+  +f+++++ +        d++l+++++  
    CCE28101.1  67 IFYGSQTGTAEDYASRLAKEGKSrFGLETMVADLEEYDYDnLDTMPSDKVAMFVLATYGEGEPTDNAV-EFYEFITGEDVSfseGGDDPLQNLNYVA 162
                   8********************99789*****************************************9.99999988865576666789******** PP

                   EEEECTTSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHHHHHHHH CS
  Flavodoxin_1  93 fglGdsayenFcaagkkldekleelGaerllkllegdednqegqeeafrkW 143
                   fglG+ +ye+++ +++ +d+ l++lGa r+++ +egd+    ++ee+f +W
    CCE28101.1 163 FGLGNNTYEHYNSMVRNVDKALTKLGAHRIGQAGEGDDGA-GTMEEDFLAW 212
                   **************************************99.899****999 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.22   1.3e+03      18      38 ..      54      75 ..      50     102 .. 0.76
   2 !   70.9   0.0   2.1e-23   1.3e-19       1     107 [.     544     654 ..     544     656 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.22
                   HHHH.CTTCSEEEEEEEESSGC CS
  NAD_binding_1 18 ilee.akdktkvvlvyGnrtee 38
                   i+e+ ++  +++v++yG +t  
     CCE28101.1 54 IIEKmEESGKNCVIFYGSQTGT 75
                   55665667899******99865 PP

  == domain 2  score: 70.9 bits;  conditional E-value: 2.1e-23
                    EEEEGGGGHHHHHHHHHHHHHCT...TCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH...HS CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeak...dktkvvlvyGnrtee.dllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells...lk 89 
                    m+++GtG+aP+r+++++++++a+     +k++l++G+r++  d+ly+ e+ee++k+l ++l++v++ sre +++    ++vq++l e + +   l 
     CCE28101.1 544 MVGPGTGVAPFRGFIQERAKQAQngtSVGKTILFFGCRKRSeDFLYESEFEEYKKTLGDNLEIVTAFSREGSEK----VYVQHRLKERSKEvgeLL 635
                    9********************66688889*********9877************************88888875....999999999888888888 PP

                    STTEEEEEEC.SHHHHHHH CS
  NAD_binding_1  90 keethvyvCG.ppgMikav 107
                    ++ + +yvCG +  M++ v
     CCE28101.1 636 SQRAYFYVCGdAAHMAREV 654
                    **********999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 5273.68
//
Query:       CCE28102.1  [L=2547]
Description: uncharacterized protein CPUR_01576 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-209  697.6   0.0   2.5e-209  696.8   0.0    1.4  1  MOR2-PAG1_N    Cell morphogenesis N-terminal
    6.6e-89  298.1   0.1    4.1e-88  295.5   0.0    2.4  3  MOR2-PAG1_C    Cell morphogenesis C-terminal
    9.5e-37  126.2   7.4    7.5e-17   60.3   0.0    3.7  3  MOR2-PAG1_mid  Cell morphogenesis central region
  ------ inclusion threshold ------
      0.082   12.4   0.1       0.54    9.7   0.0    2.2  2  UCH            Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> MOR2-PAG1_N  Cell morphogenesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  696.8   0.0  5.5e-213  2.5e-209       1     551 []     361     947 ..     361     947 .. 0.97

  Alignments for each domain:
  == domain 1  score: 696.8 bits;  conditional E-value: 5.5e-213
  MOR2-PAG1_N   1 eRkslvsiyilcrvLieilkqstkeslteelgekLeeivFkqlkkadpeslsssplrlanwnlfAelLGvlSeirFasVsdrFiaeLeklrke..... 93 
                  eR s+vsiy+lcrvL+ei++q++ es+t e++ekLe i+F+qlk ad ++l ss+l+l+nwnlfAe+LG++S i+F  V +rF+++L+++ +e     
   CCE28102.1 361 ERLSTVSIYVLCRVLLEIISQCSLESITLEMEEKLEGIIFGQLKIADIDQLLSSQLKLSNWNLFAEILGCMSGINFPGVARRFLEDLDSSLQEmsakn 458
                  799******************************************************************************************9**99 PP

  MOR2-PAG1_N  94 ....askeleaklellirGmrylklkvypeeafeesadFlkslakffeeakgsevkhAyaellselLlpvaasat.aevnhpkwaeavellypraakm 186
                      a++e+e k+el++ Gm++lk+k++pe+ +e s++Fl sl+++f++a+g++vk A++++++ lL p+aa+a+ +++ hpkw e+v ++++r+a+m
   CCE28102.1 459 ptspATREAEGKMELVLGGMKHLKVKISPESTWEMSCEFLVSLGRLFSRAHGQRVKFAFCQTFDLLLRPIAANASnSHLLHPKWYEVVVSIRERLAQM 556
                  99998899*******************************************************************99********************* PP

  MOR2-PAG1_N 187 skkpkhwnaafpLvttlLCvspkefFlanWlsllesllsklKdkstravalealsrllwvYlyRckeslntttkkLeeilkllfpkgkrklitpddel 284
                  s kp+hw+++fpL++tlLCvs+++ F+++Wl l+ s ++klKd++tr+++l+++srl+w YlyR++++ +t ++kL+++++l++p+gkr+++++d ++
   CCE28102.1 557 SVKPRHWSVTFPLTATLLCVSSPDSFSSQWLPLILSAQAKLKDRNTRPLCLQVISRLVWSYLYRTSDNFQTSARKLDDVMRLVLPSGKRSITASDVAV 654
                  ************************************************************************************************** PP

  MOR2-PAG1_N 285 leplvqiirfiaskhldfafkniifpllnaelfsss...klenlepermiigirAflailsdlekkeq.rPpfPtss..................... 357
                  ++pl+qiir+i++k+++++f+++ifpl+naelf ++   ++e+l+p+r+++girAfl+i+sdlek+eq rPpfP+                       
   CCE28102.1 655 TDPLIQIIRIIGFKYPEYCFRTVIFPLMNAELFMTEkelRVEQLDPDRIVVGIRAFLCIMSDLEKGEQgRPPFPRGNdtlppseerwlafpifalptt 752
                  ********************************87777878***********************************8899**************99999 PP

  MOR2-PAG1_N 358 ......dasekeedllsrpvgtsalsetkkeylakaglkkyyeevskilgkililldqtvGrqlvldeklss..pkt.iaesfsf.rkddhaavd.ek 444
                        +a   ++++ srpv t++ls+ +++y         y ++++ilgki+++++ t+G+q++ldek++s  pkt i+++fsf r+d+h +++ +k
   CCE28102.1 753 dgtvskTAFGLKKESVSRPVLTHVLSDGARDY---------YLQFCQILGKITTVCNDTFGGQAALDEKFNSpgPKTpISDTFSFsRRDEHPNAPeQK 841
                  99998877777888889999888888888777.........******************************778***********77788997777** PP

  MOR2-PAG1_N 445 qakleLlktaiealPrclpesipfkslielLcrgtvHvdpeiaesaaqaLkaliarqkkrqqvvtgfarfifkfddkyssvsevsmlgseeieslLkl 542
                  qa++eLl++a++alPrclp++i+++ li lLc+gt+Hv+++ia+s+a +Lka iarq+++qqvv gf+rfif+f+ +ys++s ++mlg+++i+++L+l
   CCE28102.1 842 QAFYELLHVAVQALPRCLPADISSTPLIHLLCTGTAHVQSNIAHSSACSLKA-IARQSHAQQVVAGFSRFIFDFEGRYSEMSGGRMLGPGHIDNTLRL 938
                  ****************************************************.********************************************* PP

  MOR2-PAG1_N 543 yvelLeiWi 551
                  yvelL+iW+
   CCE28102.1 939 YVELLHIWL 947
                  ********5 PP

>> MOR2-PAG1_C  Cell morphogenesis C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.6     7e+03     153     185 ..    1682    1714 ..    1672    1722 .. 0.84
   2 ?   -2.0   0.0      0.58   2.6e+03     160     189 ..    1801    1830 ..    1794    1834 .. 0.85
   3 !  295.5   0.0   9.3e-92   4.1e-88       1     253 []    1988    2238 ..    1988    2238 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.6
  MOR2-PAG1_C  153 rfrtkddflkqvvkalreayfpehesealvlll 185 
                   ++r   df+ q++   re+ f e++++++v+l 
   CCE28102.1 1682 NVRLILDFVMQLCFERREQNFVEYAKQIVVFLS 1714
                   5666679999999999*************9996 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.58
  MOR2-PAG1_C  160 flkqvvkalreayfpehesealvlllglle 189 
                   +l qvv+al ++y+p  + +a  +l+ +++
   CCE28102.1 1801 LLLQVVTALWDHYTPLVQDQAREMLVHMIH 1830
                   6889***********999999888888865 PP

  == domain 3  score: 295.5 bits;  conditional E-value: 9.3e-92
  MOR2-PAG1_C    1 pqlFWttvAcLetdfeseFlealelLeklldkldlddpevvevllksqpqkwegdfeglqalvlkGlrssetleatlellskLtklsddelvdssd 96  
                   pqlFWtt+AcLe+++e+eFlea  +L +l+ kld+++p+v++++++ +p++wegdf g+q+l++kGlrss +++atl++++kL++l+ d+l++ +d
   CCE28102.1 1988 PQLFWTTCACLESINEREFLEATGMLAELVGKLDFRSPNVRRIIADGRPDRWEGDFVGVQPLLYKGLRSSLCWQATLDTIDKLVRLPADPLIG-DD 2082
                   9********************************************************************************************.99 PP

  MOR2-PAG1_C   97 srllllilalLPrllqaleekeedqkvlevAenlaalaeekglenLarvltsyakgrfrtkddflkqvvkalreayfpehesealvlllgllengp 192 
                   srl++++la++Pr++++l ++++ + +l++A++l + a++ gle++  vl+ +a+g+ +++++f++q++ al+e+++p+h+ +++++l+gll+n+ 
   CCE28102.1 2083 SRLFFALLANFPRFVHELVNGSVGEATLKTARTLLSEADKMGLESIGLVLDDFASGKQQDSSEFINQLFMALKEHFLPQHDLKMVTFLIGLLTNSL 2178
                   9*********************************************************************************************** PP

  MOR2-PAG1_C  193 ewlrrktlqiLkvllqeidlrkpaeisslgsdllspllrlletelcseALeVLdevvsvsg 253 
                   +w++++t++iL+v ++++d+r+p ei++ gsdl+spllrll+te+c++ALeVLd+++++sg
   CCE28102.1 2179 SWVKVQTMRILCVAIPQVDMRNP-EIAGYGSDLISPLLRLLQTEFCMNALEVLDNILTMSG 2238
                   *********************99.***********************************96 PP

>> MOR2-PAG1_mid  Cell morphogenesis central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   1.4   5.6e-11   2.5e-07       9     445 ..     986    1464 ..     979    1471 .. 0.67
   2 !   60.3   0.0   1.7e-20   7.5e-17     489     714 ..    1471    1701 ..    1461    1739 .. 0.83
   3 !   38.1   0.1   8.7e-14   3.9e-10     923    1091 ..    1773    1940 ..    1758    1961 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 5.6e-11
  MOR2-PAG1_mid    9 ldavgliflssvdvqirhtalellrcvralkndlrdlsvkersdsklknekepifiidvleengddivq..scywdsgrpydlrresd...avp 97  
                      +a gl fl+s   ++rh a+ +lr +  + + l + ++k          k p+ +i+++e + ++i++             l+r  +   +  
     CCE28102.1  986 AEAYGLFFLCSQSRRVRHFAITVLRLIVDFDKVLTKTAAKR---------KAPVRLINIIEGESEQIMKfdDEQLSVAERSRLQRGLQnanVKS 1070
                     5799*********************9988887777755544.........789************99862223344445555666544100444 PP

  MOR2-PAG1_mid   98 sdvtlqsilesadksrwarclselvkyaaelcpssvqear.................levvqrlaqitpve.lggkakqsqdteskldqwllya 173 
                     + v l +   s d s w +++ +l+  a+e cp +v  +r                  e ++ l     ++   g     q+ e  ++qw ly 
     CCE28102.1 1071 AVVELCTSDVSYDASLWFKIFPNLISIASERCPLAVAICRdlicsrllqmykhivfmSEPTRGLYYSPDANsRTGSRSPGQQPEVTVEQWKLYL 1164
                     456677777899***************************96666555444433333222333333222222123444455777999******** PP

  MOR2-PAG1_mid  174 mfacsc......ppdsredsalk................aakelyhlilpslksgseakikaatlalghshlevceimlgelasfleevasete 245 
                     +fac+       pp ++ +s+++                +a+ l++ ++  l   s +   a  ++lg   + +  i+l el+  +     e  
     CCE28102.1 1165 IFACATfsdsetPPPDVTASDVHhansgpkleqpiekilTARMLFKTLISLLSVSSASVRDAIVVSLGCINIGIYRILLEELQGQVSRCIDEAR 1258
                     ****8533333333333333222111111111111112256777777777677777777889999*********************99999999 PP

  MOR2-PAG1_mid  246 skpkw.....ksqkarred.lrvhvaniyrmvaeniwpgmlsrkpvlrlhflkfieetvrqiltspsenfqdlqplryalasvlrslapelvds 333 
                     +kp         ++ r+ d lr+ ++ ++++ ++ +   ++     +   +  + ++    ++   ++   ++q lr   + ++  l   +  +
     CCE28102.1 1259 AKPLHqrtnsVPRRNRKMDlLRTEISHVFKLTSHFLEDPLVYESDFFLNSLTSYAKDLKLFLMDGEVQMDWEFQKLRRYYCGLMEALFEGINRT 1352
                     9998744433334556655479*********999988888888888888888899999999999999999999999988888888887666555 PP

  MOR2-PAG1_mid  334 k..serfdsrtrkrlfdlllswsddtgstwsqdgvsdyrreverykasqnsrskdsvdklsfdkevaeqleaiqwvamnalaallygpcf..dd 423 
                     k  s  +    rk  f l+  w+  + +     +  d  r   +    q+s  +  v   +++ e       ++ +a+ a+a+l  gp+    +
     CCE28102.1 1353 KdpSRWMTFESRKSAFSLMEDWCGFSPNQNQIRAREDTMR---QSLIDQQSLGERGVATAAMEIEK----RNLRTAALSAMASLCAGPVSitTE 1439
                     422666788899***********87665444444333333...23344555555555555554443....457788899999999998641122 PP

  MOR2-PAG1_mid  424 narkl...sgrviswinslflepap 445 
                         l     r+++w++++f+  + 
     CCE28102.1 1440 SGATLqfdVRRMLTWLEAIFNSGSD 1464
                     2222211135677777777776555 PP

  == domain 2  score: 60.3 bits;  conditional E-value: 1.7e-20
  MOR2-PAG1_mid  489 kvalknllqtnld...lfpacidqcyssd.asiadgyfsvlaevymrqeipkceiqrllslilykvvdqsrkirddalqmletlsvrewaedge 578 
                     +  l+n++  n +   ++  ci +cy s+ + +++ yfsv aev  ++    c   + l+l l+ + +++  ir ++  +l  l +r+  +   
     CCE28102.1 1471 QRGLRNIVSHNQEhphILENCIARCYLSEvPKVSESYFSVTAEVLQKYPNYPCPFWKSLALCLFMLGNKQSDIRSKSSTVLRHLEMRQQRNSK- 1563
                     56788999888753337899******9983579***************9999**********************************9876655. PP

  MOR2-PAG1_mid  579 egagryraavvgnlpdsyqqfqyklsaklakdhpelsellceeimqrqldavdiiaqhqvltcmapwienlnflklkesg....wserllksly 668 
                          +  ++  +    y+  q+++s +lak++pe +  +  e        +  +aq +v++++ pwi+ ++ lkl   g     s  ll  l 
     CCE28102.1 1564 --IQDFDISISDKTQAVYKLAQFEISKRLAKQYPEQAFYVFSEFTCYF-KDLPPVAQRNVVAVILPWIQTIE-LKLDPNGgptaQSYVLLANLL 1653
                     ..88999**********************************9987665.557889****************6.566654423335788****** PP

  MOR2-PAG1_mid  669 yvtwrhgdqfpdeieklwstvaskrr..niipvldflitkgiedcdsn 714 
                      +t + g  +  e++ lw+++a+ ++  n+  +ldf++    e  + n
     CCE28102.1 1654 ELTIKFGGALHSEVQALWQALATGPHagNVRLILDFVMQLCFERREQN 1701
                     **********************9765449********99888876655 PP

  == domain 3  score: 38.1 bits;  conditional E-value: 8.7e-14
  MOR2-PAG1_mid  923 llsradialillaeiayendedfrehlpllfhvtlvsmdssedivlkhcqdllvnllyslagrhlelyevessdgenkqqvvslikyvqskrgs 1016
                      +s  +++lill ++         + +pll++v     d    +v ++ +++lv +++ l    ++   v     +    +  l+  ++ +  +
     CCE28102.1 1773 GFSLGQLSLILLVDLMVSPVHLTPDSVPLLLQVVTALWDHYTPLVQDQAREMLVHMIHELVLSRMDDIAVGVPRAD----IQQLVDAIRRHDRA 1862
                     5666788999999999999999999***********************************9988887766555444....44566667777888 PP

  MOR2-PAG1_mid 1017 lmwenedat..lvrtelpsaallsalvlslvdai.ffqgdlrekwgaealkwamectsrhlacrshqiyralrpsvts 1091
                     ++w  ed+   +   +    + +  l   +v++  +    ++e+wg  +l wa  c  rhlacrs qi+r++  s+  
     CCE28102.1 1863 VVWGYEDSNgkVQDRDNKVPTSMEHLTTEVVKTFqVTFPAIKEQWGRLSLTWATSCPVRHLACRSFQIFRCVLTSIDQ 1940
                     99988876522555555566677888888888752334689*****************************99888765 PP

>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.2   9.1e+02      90     155 ..    1534    1615 ..    1472    1756 .. 0.84
   2 ?    9.7   0.0   0.00012      0.54      85     117 ..    2128    2160 ..    2081    2203 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.2
                  GGGTSSSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE.................EEEEEEB-SE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxx RF
         UCH   90 ksfsgykqqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks.................klklkrlPei 155 
                   +  g+kq D     + +L  l+   +r+++ + ++ +++ +++ + +l ++++++                 +  +k lP++
  CCE28102.1 1534 FM-LGNKQSDIRSKSSTVLRHLEMRQQRNSKIQDFDISISDKTQAVYKLAQFEISKrlakqypeqafyvfsefTCYFKDLPPV 1615
                  44.389999999999999**999999998777888999999999999999999998777777777777777775556666655 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00012
                  HHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHCC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH   85 lsklaksfsgykqqDaqEflaflLdqlhedlnr 117 
                  ++ +  +f+++kqqD+ Ef+++l+  l+e +  
  CCE28102.1 2128 IGLVLDDFASGKQQDSSEFINQLFMALKEHFLP 2160
                  55566789********************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.23u 0.31s 00:00:01.54 Elapsed: 00:00:00.45
# Mc/sec: 16984.33
//
Query:       CCE28103.1  [L=147]
Description: probable spliceosomal U5 snRNP-specific 15 kDa protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-53  178.7   0.1    4.6e-53  178.5   0.1    1.0  1  DIM1      Mitosis protein DIM1


Domain annotation for each model (and alignments):
>> DIM1  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.5   0.1   2.6e-57   4.6e-53       1     133 []       5     141 ..       5     141 .. 0.97

  Alignments for each domain:
  == domain 1  score: 178.5 bits;  conditional E-value: 2.6e-57
                 TS-EE-SHHHHHHHHHH-SSSEEEEEEE-TT.-HHHHHHHHHHHHHHHHTTTTEEEEEEETTT--TTSCCCTT-...SSSEEEEEETTEEEEEE-SSS- CS
        DIM1   1 llpkLetkeevdqailseeerlvviRFGrde.daeClklDelLakiaeklknfaviylvdidevpdfnkmyele...dpvtilffyrnkhmkvDfgtgd 95 
                 llp+L + ++vdqailse++rlvviRFG+ + ++e   +De+Lak++  ++++aviy++di +vpdfn+myel+   +p++++ff+rnkh+++Dfgtg+
  CCE28103.1   5 LLPHLVSSWHVDQAILSEDNRLVVIRFGDPNkNPEVDIMDEVLAKVSPLVQKWAVIYVCDIAKVPDFNHMYELNsneEPFAVMFFFRNKHIMCDFGTGN 103
                 69**************************9752678899***********************************98889********************* PP

                 -SSB-S----HHHHHHHHHHHHHHHHHT-SEEE-SS-T CS
        DIM1  96 nnKlnfvledkqelidiietiyrgakkgkglvvspidy 133
                 nnK+nfv +++q++++i+e +yrga+kgkg v sp+dy
  CCE28103.1 104 NNKMNFVERNRQDVVNILESVYRGATKGKGQVNSPKDY 141
                 ************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1145.98
//
Query:       CCE28104.1  [L=200]
Description: uncharacterized protein CPUR_01578 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-27   95.5   0.0    5.2e-13   48.8   0.4    2.1  2  DUF2034   Protein of unknown function (DUF2034)
    4.6e-09   36.3   0.0      8e-09   35.5   0.0    1.3  1  Mrr_cat   Restriction endonuclease


Domain annotation for each model (and alignments):
>> DUF2034  Protein of unknown function (DUF2034)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.4   5.8e-17   5.2e-13       1      46 [.      49      92 ..      49      98 .. 0.96
   2 !   44.4   0.0   1.4e-15   1.2e-11      84     148 ..     100     164 ..      94     167 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 5.8e-17
     DUF2034  1 stvfrGtlYEltvkrelekkLnvesLervGGayDgGvDivGkwnlk 46
                stv+ Gt+YE+tv++ l ++   ++ +rvGGa+DgG+D+vG+w ++
  CCE28104.1 49 STVYVGTHYEYTVAQSLARY--GFDVTRVGGAFDGGIDLVGTWTIP 92
                8*******************..*********************985 PP

  == domain 2  score: 44.4 bits;  conditional E-value: 1.4e-15
     DUF2034  84 dlkVlvqCkalkkkikpkeirELsGsfsshkakkkrkstlmilvspkllTksalklldklnipli 148
                 +++Vl+qCka  ++ +p+ irEL+G+f   +a ++    l++l s +++T+ ++k l +++ p++
  CCE28104.1 100 SMRVLIQCKAGSQRAGPRHIRELEGAFVGAPAGWRGAGVLAVLLSEYPATEGVRKSLGRSQWPMV 164
                 579************************************************************98 PP

>> Mrr_cat  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   8.9e-13     8e-09       7      75 ..      55     128 ..      52     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 8.9e-13
                 TCHHHHHHHHHHHHSSSEEE---B-TTSSB--E........EEETTEEEE.....EEEEEEE--TS-B-HHHHHHHHHHCTT CS
     Mrr_cat   7 keFeklvaellealGykeveltgrsgDggiDli........akkdplgse.....rilvqaKryknkvgvkeVqeligalkk 75 
                 +++e+ va+ l+++G+  v+++g++ DggiDl+        a             r+l+q+K  +++ g ++++el ga  +
  CCE28104.1  55 THYEYTVAQSLARYGFD-VTRVGGAFDGGIDLVgtwtipfpA-------TsplsmRVLIQCKAGSQRAGPRHIRELEGAFVG 128
                 689*************9.***************765544322.......123444***********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1513.99
//
Query:       CCE28105.1  [L=175]
Description: uncharacterized protein CPUR_01579 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.028   14.9   1.2      0.028   14.9   1.2    2.2  2  DUF3245     Protein of unknown function (DUF3245)
        3.1    6.4   6.2        3.9    6.1   6.2    1.1  1  Presenilin  Presenilin


Domain annotation for each model (and alignments):
>> DUF3245  Protein of unknown function (DUF3245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.2   3.1e-06     0.028      94     140 ..      23      69 ..      17      73 .. 0.77
   2 ?    4.5   3.3    0.0051        45      35      96 ..     108     169 ..      89     174 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.1e-06
     DUF3245  94 kaeakkpvnaskrkaakvkkeakekakeakdddddddedesRskavg 140
                 +a+  kp n++ ++++k+k e+   + e +dddd+++++esR++av+
  CCE28105.1  23 AASTCKPLNPKPKSKSKSKPEKIVDSWEDDDDDDSGSDEESRTSAVS 69 
                 556667778888888887888777777778888888888*****997 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0051
     DUF3245  35 lqkeedeiftavpetlGlGAklptkaadgswnreeldsndklrrqllgKnykkvmaekekae 96 
                  + e+ +    +   +GlG k p++ +++   ++ +  ++k +r+ ++   ++  +e+e a+
  CCE28105.1 108 KRPEKTDAVARRMIAAGLGLKAPKQTEEQRAYQRSVREQEKKKREQEKEEEQRRRKESEMAK 169
                 44444444444555567777777776666444455555555555555544455555544444 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.2   0.00043       3.9     270     309 ..      66     166 ..      13     174 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00043
  Presenilin 270 e.............................................................seeeseeesseaessaeesseekeseessesseeeee 307
                 +                                                             +  +++ee+++ ++s +e++++k+++e++e++++++e
  CCE28105.1  66 SavsspvalsspstpfaathgsvpdwnhatdrpasprggdaakrpektdavarrmiaaglglKAPKQTEEQRAYQRSVREQEKKKREQEKEEEQRRRKE 164
                 123345566677888888888888888888888889999999989888888889999999885555555555555555555555544444444433333 PP

  Presenilin 308 ee 309
                 +e
  CCE28105.1 165 SE 166
                 33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2339  (0.130459); expected 358.6 (0.02)
Passed bias filter:                      745  (0.0415528); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.87
# Mc/sec: 609.91
//
Query:       CCE28106.1  [L=1118]
Description: probable Lon proteinase, mitochondrial precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-67  225.8   0.0    7.3e-67  224.9   0.0    1.5  1  Lon_C           Lon protease (S16) C-terminal proteolytic dom
    2.2e-33  115.9   0.3    7.2e-33  114.2   0.0    2.1  2  LON_substr_bdg  ATP-dependent protease La (LON) substrate-bin
    3.1e-21   76.2   0.0    2.7e-20   73.1   0.0    2.4  2  AAA             ATPase family associated with various cellula
    2.8e-06   27.6   0.0    1.3e-05   25.4   0.0    2.2  2  AAA_2           AAA domain (Cdc48 subfamily)
    9.7e-06   25.6   0.0    2.1e-05   24.5   0.0    1.6  1  AAA_5           AAA domain (dynein-related subfamily)
    1.7e-05   25.1   0.2    0.00048   20.4   0.0    2.9  2  AAA_22          AAA domain
    1.9e-05   24.5   0.1    0.00081   19.2   0.0    2.9  2  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
    4.5e-05   23.3   0.0    0.00014   21.7   0.0    1.9  1  ChlI            Subunit ChlI of Mg-chelatase
    7.6e-05   21.8   0.2    0.00018   20.6   0.0    1.6  2  AAA_PrkA        PrkA AAA domain
     0.0007   20.0   1.6     0.0042   17.5   0.0    2.8  2  AAA_16          AAA ATPase domain
     0.0017   18.1   0.0       0.17   11.6   0.0    2.6  2  AAA_30          AAA domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.044   13.5   0.0    1.9  2  IstB_IS21       IstB-like ATP binding protein
      0.015   15.4   0.0      0.059   13.4   0.0    2.0  2  AAA_14          AAA domain
       0.02   15.4   0.3      0.067   13.7   0.0    2.1  1  AAA_18          AAA domain
      0.039   14.3   0.0       0.15   12.4   0.0    2.1  1  RNA_helicase    RNA helicase
      0.048   14.0   2.1        7.8    6.9   0.3    3.7  3  DNTTIP1_dimer   DNTTIP1 dimerisation domain
      0.051   13.5   0.3       0.16   11.9   0.0    1.9  2  RsgA_GTPase     RsgA GTPase
      0.063   12.8   0.5       0.13   11.7   0.0    1.7  1  AAA_7           P-loop containing dynein motor region
      0.068   13.3   0.1       0.46   10.6   0.0    2.4  2  SKI             Shikimate kinase
      0.096   12.6   0.1        2.2    8.2   0.0    2.6  2  NTPase_1        NTPase
       0.13   12.4   0.3       0.95    9.6   0.0    2.3  2  AAA_33          AAA domain
       0.96   10.0   4.0        1.1    9.8   0.1    2.8  2  ABC_tran        ABC transporter


Domain annotation for each model (and alignments):
>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.9   0.0     9e-70   7.3e-67       2     203 ..     885    1091 ..     884    1093 .. 0.95

  Alignments for each domain:
  == domain 1  score: 224.9 bits;  conditional E-value: 9e-70
                  E-TTTTHHHH-S-SS--SSSSS--BSSEEEEEEEETTEEEEEEEEEEE.....ESS-S-EEEEES--HHHHHHHHHHHHHHTSS-GGGSS-SS-TTT CS
       Lon_C    2 vtakeleellGkkrfrseeaekedqvGvvtGlawtevGGdlltieavl.....lpgkgklkltGklgdvmkesaqaalsyvrsraeelgidkevfek 93  
                  +++++l +++G ++f+s++       Gv +Glawt++GG  ++ie+ +     ++ +  l++tG+++dvmkes ++a+s+ ++ +++   d+++fek
  CCE28106.1  885 ISKDNLADYIGPPVFTSDRLYDAGPPGVSMGLAWTQMGGAAMYIESIMqaplrTSSRPGLETTGNMKDVMKESTRIAYSVAKAFMAKQFPDNDFFEK 981 
                  7899*****************************************97622222457789************************************** PP

                  -EEEEEE-S-B-GGGGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGTTTS-HHHHTS-B-- CS
       Lon_C   94 kdihihvPeGavPkdGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdlediPeevreeleii 190 
                  +++h+hvPeGavPkdGPsaGvt++t+l+sl  +++v+  vamtGeitL+G+vl iGGl+ek++aa+rag ++vi+P++n +d  ++Pe+++e++e +
  CCE28106.1  982 ARMHLHVPEGAVPKDGPSAGVTMTTSLLSLALDVPVNPTVAMTGEITLTGKVLRIGGLREKTVAARRAGCNTVIFPSDNLSDWLELPENIKEGVEGH 1078
                  ************************************************************************************************* PP

                  EESBHHHHHHHHB CS
       Lon_C  191 lveevdevlkaal 203 
                  +v +++e+++ ++
  CCE28106.1 1079 AVGWYSEIFDLLF 1091
                  *******998765 PP

>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.0   8.8e-36   7.2e-33       5     208 .]     178     459 ..     174     459 .. 0.84
   2 ?   -2.8   0.1       5.9   4.8e+03     125     155 ..     802     850 ..     773     864 .. 0.53

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 8.8e-36
  LON_substr_bdg   5 lpldnkvlfPgitlpltvsrpksiaaierlldkdkpyigvflvkesqkdaide.esiselysvGtvarIvqil..rlddgrikvvlegleRvkik 96 
                     +p+ +++lfPg++  +t+++p+++ ai + +++++py+g fl  + ++++ d  ++ +++++vG++a+I+       +dg +  +l++++R+++ 
      CCE28106.1 178 IPIARRPLFPGFYKAITIKDPNVATAITESIKRGQPYVGAFLF-KDENEDDDViRNVEDVHDVGVFAQITSAFpiHGQDGALTAILYPHRRIRLS 271
                     7999***************************************.344444455799***************98776779***************9 PP

  LON_substr_bdg  97 kl.eke............................................................................keegylvaeveii 114
                     +l ++                                                                             k+ ++  a ve++
      CCE28106.1 272 SLvSSSttgaeksdskqgpeaeaetpeveqqpatttttststpvegessqekkgdvvasfeegavekkpdqvaekyeptswlKKWPVSLAHVENL 366
                     99444499999999988888888888888888888888888888888888888877777777777777777777776666666666667777777 PP

  LON_substr_bdg 115 eddsepedsdslqkelkalvqeiiekikk...s..larellkllleielllkyedlenpyrLadlvaailpfsneekqelLeeldvedRlkkvle 204
                         ++e +d ++ +++a ++ei++ +k+   +  l+r +++ ++   +  + +++++p++Lad++aa+ +++ +e+qe+L  ++ve+R++k+l 
      CCE28106.1 367 ----TDEPYDPKSPVIRAVTNEIVNVFKEvaaMnnLFRDQISTFS--MSQSTGNVTTEPGKLADFAAAVSSGEQNELQEVLSCMNVEERMQKALI 455
                     ....8899999999***************77626799****9996..444446889*************************************** PP

  LON_substr_bdg 205 lLkr 208
                      Lk+
      CCE28106.1 456 VLKK 459
                     9985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.9
  LON_substr_bdg 125 slqkelkalvqeiiekikk..................slarellkllle 155
                     +l+k++++ ++ +  ki +                  +++ +++k+  e
      CCE28106.1 802 NLKKQIEKVYRKSALKIVQdlgeevlpeeealtdegkAALEQSQKKAAE 850
                     3445555555554444444555555555554444433245555555555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.9   1.6e+03       9      24 ..     105     120 ..     102     135 .. 0.84
   2 !   73.1   0.0   3.3e-23   2.7e-20       1     127 [.     610     747 ..     610     752 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.9
                 SSHHHHHHHHHHHHTH CS
         AAA   9 tGKTllakavakelgv 24 
                  GKT +++ va+ +++
  CCE28106.1 105 SGKTVTVENVAEASSI 120
                 6**********98754 PP

  == domain 2  score: 73.1 bits;  conditional E-value: 3.3e-23
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk.........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLl 90 
                 ++++GppG+GKT++ k++a+ l++e++++s+  l +          yvg+ + +i + +k++++++    ++iDE+d++   +       + +  ++Ll
  CCE28106.1 610 LCFVGPPGVGKTSIGKSIARALNREYYRFSVGGLSDVaeikghrrtYVGALPGRIIQALKKCQTEN--PLILIDEVDKIKLGN-------QGDPSSALL 699
                 589*******************988777777777744677777777*****************998..9**********7666.......899****** PP

                 HHHHHTTTS............SSTEEEEEEESSGGGSTHHHHSTTSSEE CS
         AAA  91 teldgvkkk............eskvivigatnrpdkldpallrgRfdrk 127
                 + ld ++++             skv++++++n  d+++++ll +R++ +
  CCE28106.1 700 ELLDPEQNNsfldhymdvpvdLSKVLFVCTANMTDTIPRPLL-DRMELI 747
                 *********************999******************.**9876 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       8.8   7.2e+03      60      71 ..      96     108 ..      63     127 .. 0.54
   2 !   25.4   0.0   1.6e-08   1.3e-05       7     132 ..     611     735 ..     606     767 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8.8
                 TTT-HHHHTTS.E CS
       AAA_2  60 ppgyvgaeegG.i 71 
                 ++  ++++e+G  
  CCE28106.1  96 ANVQNRKKESGkT 108
                 3333333333322 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1.6e-08
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---.----THHHHHHHHH..TTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselle.eeevehlvsrliga..ppgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqi 102
                  ++gp gvGkt + k++a+ l+ ++  ++ +   s+++e +   +++v  l g   +   + + e+  +l+DE+dKi+    ++ d S      +LL +
  CCE28106.1 611 CFVGPPGVGKTSIGKSIARALN-REYYRFSVGGLSDVAEiKGHRRTYVGALPGRiiQALKKCQTENPLILIDEVDKIKL--GNQGDPS-----SALLEL 701
                 599*******************.89999999999999995445555555554431133344445555************..6666666.....678888 PP

                 HH....--EE-------EE-TT-EEEEEE--TTH CS
       AAA_2 103 le....ggtltdkqgrkvdtknilfImtgafgss 132
                 l+    ++ l    + +vd +++lf++t ++  +
  CCE28106.1 702 LDpeqnNSFLDHYMDVPVDLSKVLFVCTANMTDT 735
                 883332455556666***************9765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.6e-08   2.1e-05       2      78 ..     610     687 ..     609     744 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.6e-08
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------.G-SEEEEESGGG-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngtts.lvdsplvraar.egeilvlDEverae 78 
                 ++ vGppG+gK+++ +++a+alnre+           +++kg+r++  g    +  ++l+ +++ e  ++++DEv++++
  CCE28106.1 610 LCFVGPPGVGKTSIGKSIARALNREYYRFSVGGLSDVAEIKGHRRTYVGALPgRIIQALK-KCQtENPLILIDEVDKIK 687
                 799******************************************864443303334444.3336999********986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.7   3.8e+03      16      30 ..     105     119 ..     103     131 .. 0.82
   2 !   20.4   0.0   5.9e-07   0.00048       5     112 ..     607     702 ..     604     714 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.7
      AAA_22  16 tGKTtllrrlleqld 30 
                 +GKT+++++++e   
  CCE28106.1 105 SGKTVTVENVAEASS 119
                 8********999764 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 5.9e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav.ielliiDEaqh 102
                  +il+ +G++G+GKT   + +++ l         ++e++++ + +++       +++++ g+++ +      +l  ++ qal+++++  +l++iDE+++
  CCE28106.1 607 GKILCFVGPPGVGKTSIGKSIARAL---------NREYYRFSVGGLS-------DVAEIKGHRRTY----VGALPGRIIQALKKCQTeNPLILIDEVDK 685
                 6899*********************.........9997777777776.......666666655554....668889*********************** PP

      AAA_22 103 lr...s....eealeeL 112
                 +    +     ++le L
  CCE28106.1 686 IKlgnQgdpsSALLELL 702
                 96655233334444444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   9.9e-07   0.00081       7      62 ..     580     636 ..     576     652 .. 0.87
   2 ?    1.7   0.0      0.24     2e+02      40      80 ..     908     955 ..     900     960 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 9.9e-07
      RuvB_N   7 eeyigqekvkeklkifieaakkreealdhvl.lyGpPGlGkttlakiiakelgvklk 62 
                 e++ g ++vk+++  fi+  k r++    +l ++GpPG+Gkt++ k ia+ l+ +  
  CCE28106.1 580 EDHYGLKDVKDRILEFIAVGKLRGTVEGKILcFVGPPGVGKTSIGKSIARALNREYY 636
                 578899********************99998578****************9998765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.24
      RuvB_N  40 GpPG....lGkttl...akiiakelgvklkitsgPvlekagdlaallt 80 
                 GpPG    l  t +   a+ i + +++ l+++s P le +g++  +++
  CCE28106.1 908 GPPGvsmgLAWTQMggaAMYIESIMQAPLRTSSRPGLETTGNMKDVMK 955
                 666522114455554437889999******************988876 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.7e-07   0.00014      13     121 .]     945    1060 ..     937    1060 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.7e-07
        ChlI   13 tivGlpdtavkeskervrsalkn.......sgfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieaeeetlflGeLsldGslrpvkgvlp 102 
                  + +G  +  +kes +   s  k         +  f++ ++ + +    ++k+G++   ++  ++l+ + +++++ ++ + Ge+ l+G++ ++ g+ +
  CCE28106.1  945 ETTGNMKDVMKESTRIAYSVAKAfmakqfpDNDFFEKARMHLHVPEGAVPKDGPSAGVTMTTSLLSLALDVPVNPTVAMTGEITLTGKVLRIGGLRE 1041
                  5556666666666544444443344444444455777788888888899************************************************ PP

        ChlI  103 ialaakkegikkvivpken 121 
                   ++aa+++g+++vi p +n
  CCE28106.1 1042 KTVAARRAGCNTVIFPSDN 1060
                  ****************987 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       4.3   3.5e+03      22      59 ..     448     485 ..     441     519 .. 0.55
   2 !   20.6   0.0   2.2e-07   0.00018      58     114 ..     577     633 ..     567     647 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.3
    AAA_PrkA  22 erlldlikdkglelvdtaederlsrifsnetikkypaf 59 
                 er+ ++++    el++++ ++++s+  +n+  k+   f
  CCE28106.1 448 ERMQKALIVLKKELMNAQLQSKISKDVENKISKRQREF 485
                 55555544433466666666666666666665554333 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 2.2e-07
    AAA_PrkA  58 afeedffGleetiekiveyfraaaqrleerkqilyllGPvggGksslverlkkllea 114
                 +++ed +Gl+++ ++i+e++     r+ ++ +il ++GP g Gk+s+ +++ ++l+ 
  CCE28106.1 577 VLDEDHYGLKDVKDRILEFIAVGKLRGTVEGKILCFVGPPGVGKTSIGKSIARALNR 633
                 6789***********************************************999975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   5.2e-06    0.0042      24      63 ..     607     646 ..     589     671 .. 0.72
   2 ?    0.8   0.0       0.7   5.7e+02     117     149 ..     658     688 ..     639     711 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.2e-06
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 + ++ ++G++GvGK+s+ ++++ral++++  f  g   + 
  CCE28106.1 607 GKILCFVGPPGVGKTSIGKSIARALNREYYRFSVGGLSDV 646
                 38999***********************888866555555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.7
      AAA_16 117 srllellkrllallsrderplvlvlDdlqwade 149
                  +l   + ++l+++++ e   ++++D++++++ 
  CCE28106.1 658 GALPGRIIQALKKCQT-EN-PLILIDEVDKIKL 688
                 5677788999999999.77.68899****7766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00021      0.17      19      58 ..     608     649 ..     601     691 .. 0.66
   2 ?    3.5   0.0     0.064        53      45      79 ..     758     793 ..     748     824 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
      AAA_30  19 rvavltGpAGtGKttalkalreaweaag..grviglAptgka 58 
                 ++ + +Gp+G GKt + k++++a++++   ++v gl+  ++ 
  CCE28106.1 608 KILCFVGPPGVGKTSIGKSIARALNREYyrFSVGGLSDVAEI 649
                 47889*****************99999522555555555554 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.064
      AAA_30  45 aggrviglAptgkaAkvLae.elgieastiakllkr 79 
                 +      lApt+kaA+ L++ +++++ + i++l+k+
  CCE28106.1 758 KAIATRYLAPTAKAAAGLKDaKVNLNDEAIDELIKS 793
                 4566789***********963556677777776655 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.4e-05     0.044      46     134 ..     606     702 ..     569     709 .. 0.67
   2 ?   -2.2   0.0       3.7     3e+03      83     126 ..     787     831 ..     771     833 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.4e-05
   IstB_IS21  46 kkenivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrd......gklaralkrllkv.dllilDdlgllpldqae..aellfevi 134
                 + + ++++Gp+GvGK+ +  +++++  r+ ++ +   ++d+ +e+k +rr       g++ +alk+++    l+++D++   +l ++   ++ l+e++
  CCE28106.1 606 EGKILCFVGPPGVGKTSIGKSIARALNREYYRFSVGGLSDV-AEIKGHRRTyvgalpGRIIQALKKCQTEnPLILIDEVDKIKLGNQGdpSSALLELL 702
                 45568999*****************9999999888888885.45565555333333367777777765553578888888877765541145666666 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.7
   IstB_IS21  83 vedLveelkrarrdgklaralkrllkv.dllilDdlgllpldqae 126
                 +++L+++  r+ +  +l+++++++ +  +l i+ dlg + l ++e
  CCE28106.1 787 IDELIKSYCRESGVRNLKKQIEKVYRKsALKIVQDLGEEVLPEEE 831
                 566777777778888888888887665388899999988776665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.5   4.5e+03      12      27 ..     104     119 ..     103     126 .. 0.79
   2 ?   13.4   0.0   7.3e-05     0.059       2      77 ..     607     687 ..     606     732 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.5
      AAA_14  12 rvGKTtllkqlikell 27 
                  +GKT+ ++++++ + 
  CCE28106.1 104 ESGKTVTVENVAEASS 119
                 68*******9997665 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 7.3e-05
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderd....kkladpe.........kllelileklkeekktylflDEiqevp 77 
                 +kil+ +G+  vGKT + k +++ l    +++  +++   +d    k +   +         ++++++++  +  ++ ++++DE+ +++
  CCE28106.1 607 GKILCFVGPPGVGKTSIGKSIARALN---REYYRFSVGGLSDvaeiKGH---RrtyvgalpgRIIQALKKC-Q-TENPLILIDEVDKIK 687
                 68999*****************9988...88888887776664333222...1224553333444444443.3.5899*******9993 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   8.3e-05     0.067       2      25 ..     611     640 ..     610     694 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.3e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf......g 25 
                 +  G+pGvGKt+++k +++ l+       +
  CCE28106.1 611 CFVGPPGVGKTSIGKSIARALNReyyrfsV 640
                 678***************998655565553 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00019      0.15       1      36 [.     610     657 ..     610     731 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00019
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl............klkkkdsvys 36 
                   ++++Gp+g+GK+++ k++a+al +++            + k + ++y+
    CCE28106.1 610 LCFVGPPGVGKTSIGKSIARALNREYyrfsvgglsdvaEIKGHRRTYV 657
                   589*******************98886666666666665555555555 PP

>> DNTTIP1_dimer  DNTTIP1 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.3    0.0096       7.8       4      51 ..     460     508 ..     459     520 .. 0.84
   2 ?    2.3   0.0      0.27   2.2e+02      34      57 ..     775     797 ..     752     806 .. 0.65
   3 ?    2.5   0.0      0.24   1.9e+02      22      44 ..     803     825 ..     782     847 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0096
  DNTTIP1_dimer   4 dLLrkvlQpainkevdevikkylrkvf.kpAveNireNlgeevvteadv 51 
                    +L+ + lQ++i k+v++ i k  r+++ ++ ++ ir+ lg e++ ++++
     CCE28106.1 460 ELMNAQLQSKISKDVENKISKRQREFWlMEQMKGIRRELGLESDGKEKL 508
                    69999**********9999999888864899***********9976554 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.27
  DNTTIP1_dimer  34 veNireNlgeevvteadvqklcrs 57 
                     + ++ Nl++e+  +++++  cr+
     CCE28106.1 775 LKDAKVNLNDEA-IDELIKSYCRE 797
                    456777777776.56677777764 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.24
  DNTTIP1_dimer  22 ikkylrkvfkpAveNireNlgee 44 
                    +kk ++kv+++ +  i + lgee
     CCE28106.1 803 LKKQIEKVYRKSALKIVQDLGEE 825
                    34555555555555555555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       9.8     8e+03      43      69 ..     447     471 ..     427     481 .. 0.54
   2 ?   11.9   0.0   0.00019      0.16      90     122 ..     598     630 ..     580     645 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 9.8
                  HHTT-EEEEEEE-GGG--HHHHHHHHH CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeeeeleelk 69 
                  e ++++  +++ K +l++ +   ++++
   CCE28106.1 447 E-ERMQKALIVLKKELMNAQL-QSKIS 471
                  3.3444444444556776666.34444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00019
                  HHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  90 leelkellkdktsvlvGqSGvGKStLinallpe 122
                  + +l+  +++k+ ++vG+ GvGK+++ ++++  
   CCE28106.1 598 VGKLRGTVEGKILCFVGPPGVGKTSIGKSIARA 630
                  66899999*****************98888765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.13      33      65 ..     607     639 ..     603     686 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
       AAA_7  33 kkpvllvGptGtGKtviikdllkkldkekylsl 65 
                 +k +++vGp G+GKt+i k++ ++l++e y + 
  CCE28106.1 607 GKILCFVGPPGVGKTSIGKSIARALNREYYRFS 639
                 56688*********************8888765 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00057      0.46       1      20 [.     616     635 ..     616     637 .. 0.93
   2 ?   -1.3   0.0       2.6   2.1e+03      24      60 ..     788     824 ..     782     832 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00057
                 TTSSHHHHHHHHHHHHTSEE CS
         SKI   1 mGaGKstvGkllAkklglef 20 
                 +G+GK+++Gk +A++l++e+
  CCE28106.1 616 PGVGKTSIGKSIARALNREY 635
                 69***************987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.6
                 HHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCC CS
         SKI  24 DeliekrtgksiaeifeeegeegFrelEsevlkelle 60 
                 Deli+  ++ s  + ++++ e+ +r+   +++++l e
  CCE28106.1 788 DELIKSYCRESGVRNLKKQIEKVYRKSALKIVQDLGE 824
                 5566666666666666666666666666666655544 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0027       2.2       5      33 ..     613     643 ..     610     656 .. 0.77
   2 ?    1.0   0.0      0.43   3.5e+02      84     109 ..     663     688 ..     654     707 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0027
                 E--TTSSHHHHHHHHHHHH.....GGGEEEE CS
    NTPase_1   5 TGppGvGKtTlvkkvlellkss..gvkvgGf 33 
                  GppGvGKt + k ++++l+++   ++vgG+
  CCE28106.1 613 VGPPGVGKTSIGKSIARALNREyyRFSVGGL 643
                 59*****************988334456665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.43
                 HHHHHHHHHHHHH-EEEE---STTGG CS
    NTPase_1  84 lalealrkalseadviviDEiGkmEl 109
                  +++al+k ++e+ +i+iDE+ k+ l
  CCE28106.1 663 RIIQALKKCQTENPLILIDEVDKIKL 688
                 56889999999999******988766 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       1.2   9.9e+02     104     130 ..      87     111 ..      15     119 .. 0.72
   2 ?    9.6   0.0    0.0012      0.95       2      27 ..     610     637 ..     609     673 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.2
      AAA_33 104 vetdeetlkeRlakRaangddrsevpe 130
                    +ee+ k++++ R++++++   v+ 
  CCE28106.1  87 QPLSEEEVKANVQNRKKESGKT--VTV 111
                 5568888888999888887765..333 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0012
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avl 27 
                 + +vG+pG+GK+   ++++++l   +++
  CCE28106.1 610 LCFVGPPGVGKTSIGKSIARALNreYYR 637
                 579***************9999866555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.8   1.5e+03      54     102 ..     447     508 ..     380     532 .. 0.64
   2 ?    9.8   0.1    0.0013       1.1      10      36 ..     606     632 ..     603     650 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.8
                 HHHCCHCEEEE-SS...--S-TTSBHHHH.............HHHTCHHHHHHHSTTGGTTCBGE CS
                 xxxxxxxxxxxxxx...xxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  54 leslrkeigvlpqe...pqlfpeltvren.............esdeeiekalsklglkelkdtvv 102
                 +e+++k + vl++e   +ql+++++   +             +  e+++ ++++lgl+ + ++++
  CCE28106.1 447 EERMQKALIVLKKElmnAQLQSKIS---KdvenkiskrqrefWLMEQMKGIRRELGLESDGKEKL 508
                 3444444444444443334444433...0233456555555555555777777777777555554 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0013
                 TTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllk 36 
                 eg+++ +vG+ G GK+++ k +a+ l+
  CCE28106.1 606 EGKILCFVGPPGVGKTSIGKSIARALN 632
                 799*******************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1070  (0.0596798); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.95u 0.25s 00:00:01.20 Elapsed: 00:00:00.47
# Mc/sec: 7133.94
//
Query:       CCE28107.1  [L=914]
Description: uncharacterized protein CPUR_01581 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-11   43.9   0.1    1.5e-10   40.9   0.1    2.3  1  Pkinase      Protein kinase domain
    8.8e-10   38.3   0.0    1.3e-08   34.4   0.0    2.1  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
       0.12   12.6   0.0         13    6.0   0.0    2.5  2  TFIIF_beta   TFIIF, beta subunit HTH domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.1   2.6e-14   1.5e-10      13     142 ..     337     469 ..     335     563 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 2.6e-14
                 EEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE..SSEEE.EEEE--TTEBHHHHHH.....HHSS--HHHHHH CS
     Pkinase  13 GkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee..kdely.lvleyveggeladlle.....rkgslseeeakk 102
                 G Vyk++   +g++ + K+i   +      +++l Ei+ l +l+ +++++rly+v+ +  +++++ l+l y+  g+l d++      r+  ++  + ++
  CCE28107.1 337 GFVYKVR--VRGQTLVKKEIPSPDSI----NAFLYEINALSSLHySKHVIRLYGVVVDnqEEHITgLLLSYAARGSLSDVIFenckeRNFGIPWIQRER 429
                 5566666..56667777777666555....4689**********************99444455489*********999998666545555777799** PP

                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SG CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLidekgelKitDF 142
                 +akqi++gl+ +H+ g +  D   +Ni ++  g+ Ki+D 
  CCE28107.1 430 WAKQIVHGLADIHESGYVQGDFTLSNIVVNAAGDAKIIDI 469
                 ***************************************5 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.2e-12   1.3e-08      41     205 ..     356     520 ..     337     530 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.2e-12
                  SHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSS...EEEEEE--TTEBHHHHHHHT.CTTT..SBHHHHHHHHHHHHHHHHHHHHTTEEEST- CS
  Pkinase_Tyr  41 teeekeelleeakimkkl.khpnivkllgvct..keep...llivteyvkgGdLlkfLrkk.ekek..ltlkdllsfalqvAkGmeyLeskklvHrdl 129
                  + ++ +++l e++ +++l   +++++l+gv++  +  +   + +++ y++ G+L++ + ++ ++++  +   +  ++a q+ +G++ +++  +v  d 
   CCE28107.1 356 SPDSINAFLYEINALSSLhYSKHVIRLYGVVVdnQ--EehiTGLLLSYAARGSLSDVIFENcKERNfgIPWIQRERWAKQIVHGLADIHESGYVQGDF 451
                  4556799***********999***********642..4345779*************9988534441145566789********************** PP

                  SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE........EEHHHHHHHHHHHHHHHHTTSSGT CS
  Pkinase_Tyr 130 aarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk........ftsksDvWsfGvllwEiftlgesp 205
                  +  N++++    +ki D                +++ +p+ W +pEs +  +        + +ksD +  G++lw ++ l ++p
   CCE28107.1 452 TLSNIVVNAAGDAKIIDI---------------NRRGCPMGWEPPESRTIVVahnqinmyIGVKSDLYQLGMVLWALAMLEDEP 520
                  **************9984...............233478888888875443334446666778899999999999887766655 PP

>> TFIIF_beta  TFIIF, beta subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0022        13      23      49 ..     256     282 ..     251     289 .. 0.90
   2 ?    3.9   0.0      0.01        60      33      61 ..     426     454 ..     407     457 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0022
  TFIIF_beta  23 slkdLkaetrqPeayLkevLeeIAvlh 49 
                 +++ L++++ +    ++e L++IA++ 
  CCE28107.1 256 RMRHLREKSAKVYDAIRESLSDIAFYD 282
                 699*********************997 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.01
  TFIIF_beta  33 qPeayLkevLeeIAvlhrsGpfknkweLk 61 
                 q e + k++ + +A++h sG  ++ ++L 
  CCE28107.1 426 QRERWAKQIVHGLADIHESGYVQGDFTLS 454
                 779999******************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (914 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 6559.34
//
Query:       CCE28108.1  [L=472]
Description: probable stearoyl-CoA desaturase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-17   63.2   0.1    5.5e-17   61.7   0.1    1.8  1  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain
    7.5e-17   62.0  16.3    7.5e-17   62.0  16.3    1.7  2  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.1   6.1e-21   5.5e-17       8      73 ..     356     422 ..     349     423 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 6.1e-21
                 TECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTT..GGCHHHHHHHHGGEEEEE CS
      Cyt-b5   8 hngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvv..hsekdaekllkkylvGkl 73 
                   ++++++vai g ++Dv++f+++hpGg+++i+++ GkDat +f+  v  hs++ a++ll +++vG+l
  CCE28108.1 356 DSKNGKALVAIAGVIHDVTDFIKDHPGGKALISSAIGKDATSIFNGGVylHSNA-AHNLLSTMRVGVL 422
                 45667********************************************99888.8**********98 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.0     0.098   8.8e+02     142     179 ..      47      83 ..      30      89 .. 0.55
   2 !   62.0  16.3   8.3e-21   7.5e-17      10     238 ..      82     296 ..      70     299 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.098
  FA_desaturase 142 llllawlglwlalllllglalllwlvplllllfllalv 179
                     ++  wl +++ +l+ l+ + ++++vpl+l  +++++v
     CCE28108.1  47 KHVN-WLNTIFIILVPLAGLISAYWVPLRLYTAIFSVV 83 
                    4443.444444444422222227777766666666665 PP

  == domain 2  score: 62.0 bits;  conditional E-value: 8.3e-21
  FA_desaturase  10 lllglfl.lgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHaytngpdeDpdlaplalsrfeglfryllrlllgll 104
                    +++ +   lgit+++++ ++H +++ +++l  +l +++    + ++  s+ +w++ H+ HH+y  ++++Dp+      s ++gl + +l+++   +
     CCE28108.1  82 VVYYFNSgLGITAGYHRLWSHTSYRASTPLKIYL-AAV---GAAAVEGSIRWWSRGHRAHHRY-TDTEKDPY------SVRKGLMYSHLGWMVFKQ 166
                    3333333488888********9999777777777.444...6778888***************.6666****......66999999999***9999 PP

  FA_desaturase 105 vlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfllalvl.nyveHyggdwgerqvetsa 199
                    ++++      + ++ + + +++p+ +++++ +l ++ +++l++  ++ +l +  ++++++++  l+++++  a++  n + H+    ge+++ +++
     CCE28108.1 167 NPKH------AGRTDISDLNEDPVVVWQHQNYLKTLIFMALVFPTVFCGLMFNDWWGGFVYAGILRICFVQQATFCvNSLAHWL---GEQPFDDRN 253
                    9993......33999999**********98888888888887777777777777777767777777777766666679999986...788888887 PP

  FA_desaturase 200 sirsaswllnlltgnlnyHieHHlfP.....gvpwyrLpelhrr 238
                    s r ++ + +l+t++ +yH+ HH fP     ++ w++++  +++
     CCE28108.1 254 SPR-DHFITALVTLGEGYHNFHHEFPsdyrnAIEWWQYDPTKWA 296
                    777.**********************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3409.03
//
Query:       CCE28109.1  [L=443]
Description: related to nuclear pore protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-08   33.3   2.5       0.46   11.5   0.0    5.3  5  WD40         WD domain, G-beta repeat
     0.0002   21.6   0.0        1.6    9.1   0.0    4.1  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1   0.00069       6.2      13      35 ..      25      47 ..      15      50 .. 0.87
   2 ?    1.0   0.3       0.1     9e+02       8      37 ..      64      97 ..      54      97 .. 0.69
   3 ?   -1.2   0.0      0.52   4.6e+03      28      37 ..     148     156 ..     138     157 .. 0.72
   4 !    7.6   0.0   0.00085       7.6       6      37 ..     248     284 ..     243     285 .. 0.71
   5 !   11.5   0.0   5.1e-05      0.46       5      37 ..     382     415 ..     372     416 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00069
                EEEEEEETTSSEEEEEETTSEEE CS
        WD40 13 vtslafspdgawlasGsdDgtvr 35
                v ++af+ +g+  a Gs Dg++r
  CCE28109.1 25 VQAIAFNTYGDRCAIGSVDGKIR 47
                889*******************9 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.1
                ESS.SSEEEEEEETTSSE..EEEE..ETTSEEEEE CS
        WD40  8 tGH.ssvtslafspdgaw..lasG..sdDgtvriW 37
                 +H + v  l++ p   +  l+ G  ++ g  riW
  CCE28109.1 64 IAHpGEVLELQWLPATIYpsLI-GslGMEGCFRIW 97
                5786668899555555557665.634479999999 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.52
                 EETTSEEEEE CS
        WD40  28 GsdDgtvriW 37 
                 +  Dg+++i+
  CCE28109.1 148 AA-DGHLMIY 156
                 45.****998 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.00085
                 EEESS.SSEEEEE....EETTSSE....EEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtsla....fspdgaw....lasGsdDgtvriW 37 
                 +l+GH + v+++a    +          +a+++ Dg  r++
  CCE28109.1 248 ELKGHrGLVRDVAwapgNF----RghdvIATACQDGFARVF 284
                 699**555****7444333....366658999999998886 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 5.1e-05
                 EEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawl.asGsdDgtvriW 37 
                 + l++H ++v+ + f++dg+ l ++G+ Dg++ ++
  CCE28109.1 382 TRLDTHrTPVWRVGFDDDGRILgTTGD-DGKLVLY 415
                 45679*999************955555.**99887 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00018       1.6      36      89 ..      20      75 ..      14      77 .. 0.84
   2 ?    2.0   0.0     0.028   2.5e+02      51      79 ..     142     170 ..     125     177 .. 0.83
   3 ?    1.8   0.0     0.034     3e+02      39      65 ..     254     284 ..     235     290 .. 0.60
   4 ?    2.6   0.0     0.019   1.7e+02      36      66 ..     386     416 ..     374     432 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00018
  ANAPC4_WD40 36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek..avtclgW 89
                 ++d  v+++a++  g   a++  dg++r ++ +s  + h ++++  +  +v  l+W
   CCE28109.1 20 QPDDLVQAIAFNTYGDRCAIGSVDGKIRTFNRQSDGIWHLCDIWIAHpgEVLELQW 75
                 56889******************************999998875444346777776 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.028
  ANAPC4_WD40  51 klLavaysdgevrlldaesgkvvhslsvk 79 
                  + La   +dg++ ++++e+ + + ++ + 
   CCE28109.1 142 TYLALLAADGHLMIYESEEPDNLFEFACI 170
                  67999*************99888888775 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.034
  ANAPC4_WD40  39 sevrsLaWkp...dg.klLavaysdgevrll 65 
                  + vr++aW p    g  ++a a++dg  r++
   CCE28109.1 254 GLVRDVAWAPgnfRGhDVIATACQDGFARVF 284
                  5566666655222222366666666655544 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.019
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlld 66 
                  ++   v  + +  dg++L    +dg++ l+ 
   CCE28109.1 386 THRTPVWRVGFDDDGRILGTTGDDGKLVLYR 416
                  566778899999*************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3384.39
//
Query:       CCE28110.1  [L=245]
Description: uncharacterized protein CPUR_01584 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-11   43.3   0.1    7.1e-11   42.4   0.1    1.4  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.9e-10   40.5   0.0    9.2e-10   39.3   0.0    1.6  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    1.2e-07   32.0   0.1    1.9e-07   31.4   0.1    1.2  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    7.1e-05   23.2   0.1    0.00011   22.5   0.1    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0078   16.2   0.0      0.017   15.1   0.0    1.6  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0095   15.6   0.0      0.024   14.3   0.0    1.6  2  Acetyltransf_8   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.017   15.1   0.0      0.035   14.1   0.0    1.5  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.1   2.8e-14   7.1e-11      42     117 .]     123     203 ..      86     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.8e-14
                     TEEEEEEEEEEEET....TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  42 geliGfisllkipd....ekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklGF 117
                      +++G+++l         +++++++  ++  +++y+ kG+G++ ++ ++++a+++ g++ + lav + n + i+lY+ +GF
      CCE28110.1 123 KTIVGTMCLMRGGCatarTSQHRTAQMGITLAEQYQCKGYGREAINWMVDWAFRHaGLHTVSLAVASYNLRGIHLYQSMGF 203
                     5677777555555566666666777779***************************999******************88**9 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   3.6e-13   9.2e-10       9     138 .]      38     204 ..      28     204 .. 0.73

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 3.6e-13
  Acetyltransf_3   9 eeDlealf.elrsdpevmry.lpe...pltleeaeewlerawaeeseeegygwaivlkdt...g..v.iGsvglrdleeedee............ 80 
                     +eD++a++ ++ +dp v    ++e   p+ +e+ ++ l+ aw +      +g ai+l+++   g  +  G+ g+++ ++ d++            
      CCE28110.1  38 DEDIKAFLpQVEQDPVVAALaFREglgPRGEEDIRAHLK-AWSN----ALLGVAICLREDvdeGadApAGVDGMTKDQDGDGKtkgaiqkktivg 127
                     347777766789999988645444566888999999999.4876....56889999544432213344555555555555555566666666666 PP

  Acetyltransf_3  81 ...................aelgymlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                                        a++g++la++++ kGy++ea + ++++af++ gl+++   ++  N + i +++++Gf+
      CCE28110.1 128 tmclmrggcatartsqhrtAQMGITLAEQYQCKGYGREAINWMVDWAFRHAGLHTVSLAVASYNLRGIHLYQSMGFR 204
                     6666666666666888889*********************************************************6 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   7.2e-11   1.9e-07      73     153 ..     142     222 ..     122     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 7.2e-11
  Acetyltransf_4  73 akdwkaelsvylaerdnnkeglgrelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiDm 153
                      +   a + + la ++ + +g+gre i+ +++ + +  ++++   ++as n   i +++++GF+l g+ k+ i+    w+D+
      CCE28110.1 142 SQHRTAQMGITLA-EQYQCKGYGREAINWMVDWAfRHAGLHTVSLAVASYNLRGIHLYQSMGFRLQGRKKESIYFDRAWYDE 222
                     5666777777787.67999************9999**********************************************8 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   4.4e-08   0.00011      13      75 ..     124     204 ..     109     205 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.4e-08
                     EEEEEEEEEEES........TCTEE.....EEE-GGGTTSSHHHHHHHH......TTSEEEEEEEEE....THH.HHHHHHHHTTEE CS
  Acetyltransf_7  13 kivGfialslld........aeitr.....laVdpeyrgkGiGraLlea......aekgiileqlel....nae.kaikfYeklGFe 75 
                      ivG+++l++ +        +   r     +  +++y+ kG+Gr+ ++       ++ g++  ++ l      + + i++Y+++GF+
      CCE28110.1 124 TIVGTMCLMRGGcatartsqH---RtaqmgITLAEQYQCKGYGREAINWmvdwafRHAGLH--TVSLavasY-NlRGIHLYQSMGFR 204
                     556666655555555553331...234566999***************6556544335543..223333222.2588*********7 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.4e-06     0.017      28     114 ..     111     211 ..      88     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.4e-06
  Acetyltransf_10  28 egealllvaeeggkivGvielrdgs...........hisllfVdpeyrgqGigkaLleaveee.aekdgikl.eltvnasp.yavpfYeklGFk 107
                      +g+ ++ +a ++++ivG+  l++g+               +  +++y+ +G+g++ ++ + +  ++++g+++ +l v + +   + +Y+++GF+
       CCE28110.1 111 DGDGKTKGAIQKKTIVGTMCLMRGGcatartsqhrtAQMGITLAEQYQCKGYGREAINWMVDWaFRHAGLHTvSLAVASYNlRGIHLYQSMGFR 204
                      67777778888888887776644444666666664334456899**************99998688888998********************** PP

  Acetyltransf_10 108 avgeeqe 114
                        g+++e
       CCE28110.1 205 LQGRKKE 211
                      9988765 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.8   4.5e+03      25      44 ..      35      53 ..      19      62 .. 0.55
   2 !   14.3   0.0   9.2e-06     0.024      85     141 ..     152     207 ..     136     210 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
                    ---HHHHHHHHHHHC.STTE CS
  Acetyltransf_8 25 agtleevrellakldadphs 44
                    +++ e+ +++l ++++dp +
      CCE28110.1 35 DENDEDIKAFLPQVEQDP-V 53
                    333466777777776444.3 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 9.2e-06
                     EESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  85 ligeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                      ++e ++  kg++++ ++ +v+++f++ +   v +     N r i+l++++Gf+ ++
      CCE28110.1 152 TLAE-QYQCKGYGREAINWMVDWAFRHAGLHTVSLAVASYNLRGIHLYQSMGFRLQG 207
                     4554.56689********************************************987 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.4e-05     0.035      22      80 ..     146     206 ..     130     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH.S-.S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiae.rg.ktvllvvvasNtpsirlyeklGfeki 80 
                 ++  ++ + ++ + +G+g+  ++ +     + +g +tv+l v+  N + i+ly+++Gf++ 
  CCE28110.1 146 TAQMGITLAEQYQCKGYGREAINWMVDWAFRhAGlHTVSLAVASYNLRGIHLYQSMGFRLQ 206
                 555678899999*******99999988665547757899999999**************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1962.33
//
Query:       CCE28111.1  [L=306]
Description: uncharacterized protein CPUR_01585 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   14.6   0.1       0.11   12.2   0.0    2.1  2  Cyclin_N  Cyclin, N-terminal domain
       0.13   12.4   0.0        7.6    6.7   0.0    2.7  2  TFIIB     Transcription factor TFIIB repeat


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.3e-05      0.11      45     126 ..      46     156 ..      14     157 .. 0.77
   2 ?   -0.6   0.0      0.11     1e+03      68      88 ..     201     221 ..     163     239 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
                 TT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHH..........................HSSS---HHHHHHHT............... CS
    Cyclin_N  45 fkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKv..........................eeisppkledlvyit............... 102
                 ++l +++ + a ++l Rf    s   +++  v a++++l aKv                                        +               
  CCE28111.1  46 LDLPQSVTAQANVILARFWLVTSPMAHEFSDVSAASIYLVAKVgpiprsprdvsnvyayllsrnsilfkT-------------Sddqpeddpksyyqte 131
                 678999999**********************************776655555555555555555555551.............0555555555555554 PP

                 .TTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N 103 .deafteeeilemErliLetLnfdl 126
                  d  + ++ +l +E +iL tL f+ 
  CCE28111.1 132 aDYIVFQNRLLALETQILYTLSFNT 156
                 355666899*************985 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.11
                 --CCCHHHHHHHHHHHHHHHH CS
    Cyclin_N  68 vpkdklqlvgatcLllAaKve 88 
                    ++ + +++++++ AaK  
  CCE28111.1 201 YLTHQPHALATAAIYNAAKDV 221
                 344577778888888888755 PP

>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0   0.00085       7.6       8      63 ..      46     101 ..      40     103 .. 0.87
   2 ?    2.7   0.0     0.015   1.3e+02      35      67 ..     205     237 ..     192     241 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00085
                 TT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHH CS
       TFIIB   8 leLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissv 63 
                 l+Lp+ V+ +A+ ++ +              + AA++y+ ++     r+++++s+v
  CCE28111.1  46 LDLPQSVTAQANVILARFWLVTSPMAHEFSDVSAASIYLVAKVGPIPRSPRDVSNV 101
                 788888888888888888888888888888999*******************9987 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.015
                 CTTHHHTTHHHHHHTTTTSS--HHHHHHHSS-- CS
       TFIIB  35 spagiaAAclyiAcrkeevkrtqkeissvlqVs 67 
                 +p ++a A++y A++  + k    e  +v  V 
  CCE28111.1 205 QPHALATAAIYNAAKDVGAKMPDCEWWEVFDVD 237
                 68899********99887776666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2416.81
//
Query:       CCE28112.1  [L=421]
Description: uncharacterized protein CPUR_01586 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054   14.6   0.0       0.13   13.3   0.0    1.6  1  DUF5320    Family of unknown function (DUF5320)
      0.091   12.4   0.2        0.7    9.6   0.0    2.4  2  SLT        Transglycosylase SLT domain
       0.13   11.8  13.9      0.047   13.3  11.1    1.6  2  NESP55     Neuroendocrine-specific golgi protein P55 (NESP55)
        2.2    8.2   6.9          5    7.0   6.9    1.6  1  Serglycin  Serglycin


Domain annotation for each model (and alignments):
>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.9e-05      0.13       7      84 ..     197     283 ..     195     288 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.9e-05
     DUF5320   7 tGpmGlGpmtGrglGyCagadapgyansagfGrgrggrglgrgfgrrrraggarla.........aaetaeaskeeekelLeeqaea 84 
                 tGp  +Gp +G   G  +g+++ ++  ++  G+g + +g+     + ++ + ++           a+ ++e+++e+e ++ ++ +++
  CCE28112.1 197 TGPDSAGPDSGSDSGSGSGSASGKAYIKTFSGTGDHSQGWPSKSEWVDFESMWSNNledtirkscASFQQENNSEQESAAVKKAIQS 283
                 9******************99988776666666667888888888866666666667776666655555555555555555555544 PP

>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.18   7.9e+02      88     103 ..      13      28 ..       5      30 .. 0.82
   2 ?    9.6   0.0   0.00016       0.7       3      43 ..     281     324 ..     279     387 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.18
                 HHHHHHHHH-HHHHHH CS
         SLT  88 llalaAYNaGegtvkk 103
                  +a+aAY aG+g  ++
  CCE28112.1  13 GAAVAAYPAGTGLSRR 28 
                 689*******997665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00016
                 HHHHHHHHTS-HHHHHHHHHHHHTT-TT-B-...TTSEBTTTTB CS
         SLT   3 iikaekkygvepsllaaiaqvESgfnpkAvs...ksgavGLmQi 43 
                 i+  +k  g+++++++a+ ++ESg+  +A     ++   GLmQ 
  CCE28112.1 281 IQSVSKSSGIDSRFILAVLMQESGGCVRAPTtnyGVTNPGLMQS 324
                 66778899*****************99998866788899***95 PP

>> NESP55  Neuroendocrine-specific golgi protein P55 (NESP55)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  11.1     1e-05     0.047      98     157 ..     108     163 ..      72     205 .. 0.70
   2 ?   -2.7   0.0      0.78   3.5e+03      94     114 ..     253     272 ..     235     288 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1e-05
      NESP55  98 larpecleydeeeyetetdseteseseieseteietepetesetapttepetepedergp 157
                 +  pe     + e + e   et++e  i+ et+ e +pet++e  p t+pet+pe  + p
  CCE28112.1 108 V--PEMKPVAKPESKAEIKPETKPE--IKPETKPEIKPETKPEIKPETKPETKPETTPKP 163
                 2..4444455666666666666655..666666666999999999999999999887664 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.78
      NESP55  94 vepelarpecleydeeeyete 114
                 +e  + r  c  +++e+   +
  CCE28112.1 253 LEDTI-RKSCASFQQENNSEQ 272
                 44444.666666666543222 PP

>> Serglycin  Serglycin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.9    0.0011         5      93     112 ..     205     224 ..     176     231 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0011
   Serglycin  93 gsgsGsGsGsGsgsgsgflt 112
                 +sgs sGsGsGs sg+ +++
  CCE28112.1 205 DSGSDSGSGSGSASGKAYIK 224
                 57788889999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       998  (0.055664); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3091.16
//
Query:       CCE28113.1  [L=163]
Description: uncharacterized protein CPUR_01587 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1210.45
//
Query:       CCE28114.1  [L=81]
Description: uncharacterized protein CPUR_01588 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.87    9.1  15.0       0.83    9.2  15.0    1.1  1  SR-25     Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  15.0   4.6e-05      0.83      47      87 ..      40      77 ..       4      81 .] 0.49

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 4.6e-05
       SR-25 47 keeerskekkkkkrrrssssssssssssssssssssssssd 87
                ++     e++k  r++s++s+s+ s++s+s+ sss ssss+
  CCE28114.1 40 RA---AYERQKASRTTSTTSTSTTSTTSTSTDSSSESSSSS 77
                22...223333333333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1701  (0.0948742); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 626.34
//
Query:       CCE28115.1  [L=368]
Description: uncharacterized protein CPUR_01589 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2575.68
//
Query:       CCE28116.1  [L=242]
Description: related to pathogenesis-related protein NtPRp27 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-71  238.9   0.0    5.4e-71  238.7   0.0    1.0  1  BSP       Peptidase of plants and bacteria
     0.0092   16.1   0.1      0.016   15.3   0.1    1.3  1  WLM       WLM domain


Domain annotation for each model (and alignments):
>> BSP  Peptidase of plants and bacteria
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.7   0.0     6e-75   5.4e-71       2     207 .]      26     233 ..      25     233 .. 0.95

  Alignments for each domain:
  == domain 1  score: 238.7 bits;  conditional E-value: 6e-75
         BSP   2 pkvrleindldtpggkrFlrlvpdaesvlsdasrkvlklLykspser...ippvrsVtlllrdidgvaytsG..ldddhkeIhlslsyiekasaekdak 95 
                 pk+rl+++dl +pg+  F +++ +  ++l+ a+++vl+lLy++ps+     pp+rsVtl++rd++gvayt G  ld+dhkeIhl ls+i +    +   
  CCE28116.1  26 PKLRLKVKDLGHPGASLFFSSI-HPTKTLTRAATNVLRLLYHDPSDPsttPPPTRSVTLIIRDMSGVAYTMGtdLDNDHKEIHLALSHITDTD-RALTC 122
                 89********************.99******************77776779***************************************965.35555 PP

         BSP  96 aevtgvLthelvhvyqweaegrapggliEGiAdyvRlkaglepahwkrpasgadkwdqgyqvtayFLeyledrvsegfvrklNdkllrvkyssdaffke 194
                  e+tgvLthelvh+ qw+a++++pggliEGiAd+vRl+++l+p+hwk+    ++kwd+gyq+tayFL+yle+r++ gfvr+lN+kl+ +ky+++ f+ e
  CCE28116.1 123 SEITGVLTHELVHCLQWNAQNTCPGGLIEGIADWVRLRCDLAPPHWKKVV--PEKWDAGYQHTAYFLDYLERRFGSGFVRRLNEKLRVDKYDEKTFWPE 219
                 ************************************************44..46********************************************* PP

         BSP 195 ll.GkdveeLweeY 207
                 l+ G +v +L++eY
  CCE28116.1 220 LTcGMTVGDLFKEY 233
                 988**********9 PP

>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.8e-06     0.016      59      96 ..     101     138 ..      89     141 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-06
         WLM  59 nkGekieLrLRtdkddkeflpyesimgtllHELaHnvy 96 
                 n  ++i L L + +d ++ l   +i g+l HEL+H+++
  CCE28116.1 101 NDHKEIHLALSHITDTDRALTCSEITGVLTHELVHCLQ 138
                 67789******************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1912.57
//
Query:       CCE28117.1  [L=1125]
Description: uncharacterized protein CPUR_01591 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-124  414.5   0.0    3.4e-83  278.7   0.0    2.6  2  CLASP_N   CLASP N terminal
    0.00065   19.7   0.0        7.3    7.1   0.0    4.8  5  HEAT      HEAT repeat
     0.0019   18.6   4.8        4.8    7.7   0.0    5.6  5  HEAT_2    HEAT repeats
     0.0065   16.5   0.0        1.2    9.2   0.0    3.1  3  Cnd1      non-SMC mitotic condensation complex subunit 1
  ------ inclusion threshold ------
      0.056   14.0   2.0         38    4.9   0.0    4.5  4  HEAT_EZ   HEAT-like repeat


Domain annotation for each model (and alignments):
>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.0   2.7e-42   9.6e-39       2     226 ..       7     218 ..       6     219 .. 0.96
   2 !  278.7   0.0   9.4e-87   3.4e-83       1     226 [.     298     523 ..     298     524 .. 0.99

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 2.7e-42
     CLASP_N   2 dekaeellaafegketelnwdaReknilklrslikgn.vpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptL 99 
                 d+++++ll+++    ++ + da+++ ++ ++s ik++ vpe +v++l+++l+    a ++++++L  ++++++ hll +l++q  + l   + ++lp+ 
  CCE28117.1   7 DDQVADLLTVL---RSDASLDAKVQLVTVVKSAIKQHnVPETCVPHLFDGLR---TASSSQHAALVNAGFTALNHLLTRLSRQDPKLLSREAARTLPLV 99 
                 78999******...9*************************************...******************************************** PP

     CLASP_N 100 lkllgdtKkiisqnanqalaallsnasfspri.lqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaR 197
                 ++ lgd K+  ++ a+++l++l+  a    ++   v s+al++Kn++++e  ++wL + +++ +         l ++ ++++l+++leDa+  VR+ta+
  CCE28117.1 100 IDKLGDPKDKYRSLATASLNTLYPVAA--ADVeRFVRSSALTGKNPRAKEAGMHWLLTTHHERG---------LPFRGYVPQLMELLEDADGMVRDTAK 187
                 ***************************..9999999********************99988888.........999*********************** PP

     CLASP_N 198 stfweffkvwPsrAksll..ssldpkvrkal 226
                 +t++e+fk++P+ Aks+l  +  + kvr a+
  CCE28117.1 188 TTVIELFKTAPNTAKSDLkrQLKNFKVRPAI 218
                 ******************7555566777666 PP

  == domain 2  score: 278.7 bits;  conditional E-value: 9.4e-87
     CLASP_N   1 ldekaeellaafegketelnwdaReknilklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptL 99 
                 ld+ +++++ +feg+e+e+nw +Re++i +lr+l +gn+ +d++e +++ l+ ll++i+ka++sLrt+ls++gc l++e+a  l++++dpmve l++tL
  CCE28117.1 298 LDDIFRDMAVHFEGRESEQNWLKREQSINTLRRLNAGNAATDFQELFVTNLRGLLDGIIKAVTSLRTSLSKEGCGLVQEIAASLGPAIDPMVELLMQTL 396
                 7999*********************************************************************************************** PP

     CLASP_N 100 lkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRs 198
                 +kl + tKki+sq an++++ ++s +++++r++q+++ a+qdKnvqpR+y++ wLki+l++ + hks++e++++++l+ek+l+kgl Danp+VRe++Rs
  CCE28117.1 397 VKLSAGTKKISSQMANVTVQRVISRVTYNQRLMQHIWGASQDKNVQPRTYATDWLKIVLRKEACHKSHVEHTGGVELMEKILRKGLGDANPGVREKTRS 495
                 *************************************************************************************************** PP

     CLASP_N 199 tfweffkvwPsrAksllssldpkvrkal 226
                 ++w+f+ vwP+rA++l+ +ld +++k+l
  CCE28117.1 496 AYWTFWGVWPARADALMADLDATAQKLL 523
                 *************************987 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.011        39       2      30 ..      96     124 ..      96     125 .. 0.93
   2 !    7.1   0.0     0.002       7.3       2      27 ..     168     193 ..     168     196 .. 0.85
   3 ?   -2.1   0.0       1.9     7e+03      12      27 ..     316     331 ..     313     332 .. 0.87
   4 ?    0.6   0.0      0.26   9.3e+02       5      18 ..     478     491 ..     473     493 .. 0.83
   5 ?   -3.6   0.0         5   1.8e+04       8      26 ..    1067    1085 ..    1066    1088 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaev 30 
                 lPl++  l Dp  + R+ A  +L +l++v
  CCE28117.1  96 LPLVIDKLGDPKDKYRSLATASLNTLYPV 124
                 7999999*****************99875 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.002
                 HHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgal 27 
                 +P l++ll+D +  VR++A  ++ +l
  CCE28117.1 168 VPQLMELLEDADGMVRDTAKTTVIEL 193
                 699***************97766655 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.9
                 SSHHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLgal 27 
                 +++  Re ++++L +l
  CCE28117.1 316 QNWLKREQSINTLRRL 331
                 69999*******9876 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.26
                 HHHHHT-SSHHHHH CS
        HEAT   5 llkllsDpspeVRe 18 
                 l k l D +p VRe
  CCE28117.1 478 LRKGLGDANPGVRE 491
                 6788*********8 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 5
                  HHT-SSHHHHHHHHHHHHH CS
        HEAT    8 llsDpspeVReaAakaLga 26  
                  +l++ ++ VR+ A+k ++ 
  CCE28117.1 1067 CLESADSGVRMDAVKFCVS 1085
                  6888899999999887665 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.1     0.021        76      32      84 ..      72     138 ..      10     140 .. 0.77
   2 !    7.7   0.0    0.0013       4.8      31      87 ..     166     226 ..     138     227 .. 0.77
   3 ?   -1.7   0.0       1.1   3.9e+03      34      49 ..     476     491 ..     465     493 .. 0.85
   4 ?    2.5   0.0     0.053   1.9e+02      44      77 ..     984    1025 ..     944    1029 .. 0.68
   5 ?   -2.1   0.0       1.5   5.4e+03      39      53 ..    1067    1081 ..    1063    1101 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.021
      HEAT_2  32 alpaLvellededp.avRraaaeaL....gaigdpe.........alpaLkellddddddvvReaAa 84 
                 al+ L+  l+ +dp    r+aa++L     ++gdp+         +l+ L   ++ d +++vR +A+
  CCE28117.1  72 ALNHLLTRLSRQDPkLLSREAARTLplviDKLGDPKdkyrslataSLNTLYPVAAADVERFVRSSAL 138
                 5666777776666536888888888555547776555666666658888888888888888888775 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0013
      HEAT_2  31 ealpaLvellededpavRraaaeaLgai...gdpealpaLkellddddd.dvvReaAaeaL 87 
                  ++p L elled+d +vR +a ++  ++   + + a + Lk+ l++ ++ + + +a+++aL
  CCE28117.1 166 GYVPQLMELLEDADGMVRDTAKTTVIELfktAPNTAKSDLKRQLKNFKVrPAIEQAIVKAL 226
                 569*****************99988865433568899999999977554367777777776 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.1
      HEAT_2  34 paLvellededpavRr 49 
                 ++L++ l d++p vR+
  CCE28117.1 476 KILRKGLGDANPGVRE 491
                 6788999999999997 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.053
      HEAT_2   44 dpavRraaaeaLgai.......gd.pealpaLkelldddddd 77  
                    ++R++++  L  +       gd pe +++L ++l+  +d+
  CCE28117.1  984 AYDTRAHVVSGLELLadelvtlGDgPEMVDVLSKRLQACTDA 1025
                  456677777666533222222265699999999999988876 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 1.5
      HEAT_2   39 llededpavRraaae 53  
                  +le++d+ vR+ a++
  CCE28117.1 1067 CLESADSGVRMDAVK 1081
                  689999999999998 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00033       1.2      22      91 ..     167     199 ..     158     222 .. 0.65
   2 ?    3.3   0.0     0.022        78      18      41 ..     470     493 ..     460     496 .. 0.85
   3 ?   -2.4   0.0       1.2   4.4e+03      28      48 ..    1066    1086 ..    1050    1107 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00033
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksen 91 
                 +v++L + L+D d +VR ta  +v++L                                      + ++n
  CCE28117.1 167 YVPQLMELLEDADGMVRDTAKTTVIEL-------------------------------------FKTAPN 199
                 456666666666666666666666666.....................................444333 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.022
        Cnd1  18 lveylvepLrkrLkDedpyVRkta 41 
                  ve + + Lrk+L D +p VR+ +
  CCE28117.1 470 GVELMEKILRKGLGDANPGVREKT 493
                 58899999*************976 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.2
        Cnd1   28 krLkDedpyVRktaaivvakL 48  
                  ++L+  d+ VR+ a+  +  L
  CCE28117.1 1066 RCLESADSGVRMDAVKFCVSL 1086
                  677777777777777666655 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.12   4.2e+02      10      52 ..      76     118 ..      70     121 .. 0.81
   2 ?    4.9   0.0     0.011        38      23      48 ..     165     186 ..     159     186 .. 0.85
   3 ?   -2.9   0.1         3   1.1e+04      17      35 ..     380     398 ..     372     400 .. 0.64
   4 ?    3.0   0.0     0.044   1.6e+02       7      34 ..     753     777 ..     748     783 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.12
     HEAT_EZ  10 aLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                  L rl  + p ll+ +  + lp+ +  L d++d+ R  A   L
  CCE28117.1  76 LLTRLSRQDPKLLSREAARTLPLVIDKLGDPKDKYRSLATASL 118
                 566688899999999999999****99*9**999998886655 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.011
     HEAT_EZ  23 qplvpeilpaLlalLnddsd.eVRaaA 48 
                 +++vp+++ +L      d d +VR +A
  CCE28117.1 165 RGYVPQLMELLE-----DADgMVRDTA 186
                 678999999999.....9999***998 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3
     HEAT_EZ  17 gepellqplvpeilpaLla 35 
                   ++++ p+v+ ++  L++
  CCE28117.1 380 SLGPAIDPMVELLMQTLVK 398
                 4455667777777777775 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.044
     HEAT_EZ   7 AawaLGrlaggepellqplvpeilpaLl 34 
                  a+++G   +++++++  +  +i+p+L+
  CCE28117.1 753 IANGVG---QHGDRDDDAVSRQIVPQLA 777
                 466677...9999**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.23s 00:00:01.00 Elapsed: 00:00:00.40
# Mc/sec: 8459.15
//
Query:       CCE28118.1  [L=247]
Description: uncharacterized protein CPUR_01592 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.041   13.2   5.3      0.049   13.0   5.3    1.1  1  FAM76         FAM76 protein
       0.12   12.4   0.4       0.17   12.0   0.4    1.2  1  Dynamin_N     Dynamin family
       0.52    8.7  11.6       0.65    8.4  11.6    1.0  1  Borrelia_P83  Borrelia P83/100 protein
       0.97    8.5   5.8        1.4    7.9   5.8    1.2  1  Atg14         Vacuolar sorting 38 and autophagy-related subun
        2.6    6.8   7.3          3    6.6   7.3    1.1  1  Nucleo_P87    Nucleopolyhedrovirus capsid protein P87
          8    6.6  24.0       0.44   10.7  16.5    2.2  2  bZIP_2        Basic region leucine zipper
        8.9    5.0   5.1         11    4.6   5.1    1.1  1  Presenilin    Presenilin


Domain annotation for each model (and alignments):
>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   5.3   1.9e-05     0.049     196     266 ..     105     177 ..      64     198 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
       FAM76 196 laeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellek..ekelrek 266
                 + e++++++ ++++   +   ++++ +q+++e ++ ++++++kd+ l ekd +i  ++ +  +k  ++el++k
  CCE28118.1 105 MGEAQKRRQRNAEASARSRKKRVLKEAQVRKETEEARREIQEKDKILKEKDEEIEFWRRKSAKKleDEELENK 177
                 333444444444455556678999******************************9998765543113344443 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   6.5e-05      0.17      21      90 ..      48     166 ..      46     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.5e-05
                 S--S---SSS---S-EEEEE......................................CCT---CCS...SSEEEET-EB--CHHHHHHHHHHHHHHHT CS
   Dynamin_N  21 edilprgpnptTrrplelql......................................geeeeaseravkeelkekekkledfsevreeieketekiag 81 
                   +lp +p p T  p+el++                                      ge ++ ++r+++++ ++++k+  +  +vr+e e+++++i++
  CCE28118.1  48 VSVLPPKPSPQTSPPVELEHprkaslfsmlleskyegplvmkladsdmdvpvdrktgmGEAQKRRQRNAEASARSRKKRVLKEAQVRKETEEARREIQE 146
                 5799****************************************************9955555556667777777777777777777777777777774 PP

                 SSSS--SS...........- CS
   Dynamin_N  82 ankgiskk...........v 90 
                 + k  ++k            
  CCE28118.1 147 KDKILKEKdeeiefwrrksA 166
                 44443333444444444442 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  11.6   0.00026      0.65     252     341 ..     107     196 ..      87     208 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00026
  Borrelia_P83 252 eklqe.aknlpepadvsskkedkkvaeekkreiekaqkeikkkdeeakkakdakaedlkke..skaeekeaedkeleakkereevaeDlqkik 341
                   e+++  ++n++  a+  +k++ k+ +   ++e e a++ei++kd+ ++k kd++ e  ++    k e++e e+k l +  e e v e++ ++ 
    CCE28118.1 107 EAQKRrQRNAEASARSRKKRVLKEAQ--VRKETEEARREIQEKDK-ILKEKDEEIEFWRRKsaKKLEDEELENKRLTTLLEDEAVPEEMTQMS 196
                   33332244555555555555544444..689*********99986.56677776555544433344556778888888888888888887775 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.8   0.00054       1.4      68     130 ..     109     179 ..      78     200 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00054
       Atg14  68 kleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk.........kRrsdleslqneleerrk 130
                 + +++++  a+ r+r++++ +   q +ke+ee++++++++++ lk         +R+s  ++  +ele++r 
  CCE28118.1 109 QKRRQRNAEASARSRKKRVLKE-AQVRKETEEARREIQEKDKILKekdeeiefwRRKSAKKLEDEELENKRL 179
                 4455666666666666665444.4556677777777777777777777777798888887777888888775 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.3    0.0012         3     378     459 ..      99     190 ..       3     202 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0012
  Nucleo_P87 378 sdlsaqssvpdkkseasavlptekrkRrrarklqelssdede.......dssdekevDkekerkRRr....eeDkdfLrlkalelskyagvne 459
                 +d  +    +++k+ + ++ + ++ +++r+ k+ ++ ++ +e       +++  ke+D+e e  RR+     eD++    +   l ++ +v e
  CCE28118.1  99 VDRKTGM-GEAQKRRQRNAEASARSRKKRVLKEAQVRKETEEarreiqeKDKILKEKDEEIEFWRRKsakkLEDEELENKRLTTLLEDEAVPE 190
                 2221111.1223333333333444444555555555555555455554344555677777777676522224666555555555555555555 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  16.5   0.00017      0.44       7      42 ..     109     145 ..     107     156 .. 0.91
   2 ?    0.1   0.8      0.34   8.7e+02      22      33 ..     166     177 ..     162     185 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
                 XXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   7 erRr.kNreAarrsRekkkakeeeleervkeLeeeNa 42 
                 ++Rr +N eA++rsR+k+ +ke++  ++ +e ++e++
  CCE28118.1 109 QKRRqRNAEASARSRKKRVLKEAQVRKETEEARREIQ 145
                 56666*****************************998 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHH CS
      bZIP_2  22 kkkakeeeleer 33 
                  kk+++eele++
  CCE28118.1 166 AKKLEDEELENK 177
                 689999999976 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   5.1    0.0045        11     200     302 ..      63     170 ..      60     197 .. 0.41

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0045
  Presenilin 200 velaqerneeifpaLi...Ysatvvvlaaeek.....kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeess 290
                 vel + r+ ++f +L+   Y+   v+  a ++     ++++++ e ++++++++e++++s+k++  +e + +k   ++e+ +++ +e+ +  ++++e+ 
  CCE28118.1  63 VELEHPRKASLFSMLLeskYEGPLVMKLADSDmdvpvDRKTGMGEAQKRRQRNAEASARSRKKRVLKEAQVRK---ETEEARREIQEKDKILKEKDEEI 158
                 6777778888888887555666655555444444433222333333333333322222222222222222111...11122222222222222222222 PP

  Presenilin 291 eekeseessess 302
                 e  +++++++ +
  CCE28118.1 159 EFWRRKSAKKLE 170
                 222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2074  (0.115679); expected 358.6 (0.02)
Passed bias filter:                      742  (0.0413855); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1763.25
//
Query:       CCE28119.1  [L=37]
Description: uncharacterized protein CPUR_01594 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 285.91
//
Query:       CCE28120.1  [L=1159]
Description: uncharacterized protein CPUR_01593 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-45  154.2   0.5    8.4e-45  152.3   0.0    2.2  2  RhoGAP          RhoGAP domain
     0.0018   18.4   6.9     0.0018   18.4   6.9    2.5  2  LIM             LIM domain
  ------ inclusion threshold ------
       0.77    9.3   3.8        1.4    8.5   3.2    1.7  2  GCP_N_terminal  Gamma tubulin complex component N-terminal
       0.88   10.0   5.7       0.18   12.2   0.4    2.7  2  Med11           Mediator complex protein
        1.5    9.0  13.4        1.9    8.7   0.9    3.1  3  Zn-ribbon_8     Zinc ribbon domain
        2.9    8.6   9.8       0.43   11.2   1.0    3.4  3  SlyX            SlyX
        3.3    8.3  12.6         12    6.4   4.5    2.6  2  zf-CHY          CHY zinc finger
          4    8.0  13.2        3.4    8.2  10.6    2.3  1  APG6_N          Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       0.8   1.8e+03      30      87 ..     597     612 ..     570     695 .. 0.58
   2 !  152.3   0.0   3.7e-48   8.4e-45       1     146 [.     983    1128 ..     983    1146 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.8
                 HHHHHHHHHHHTGGGCTTTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSS CS
      RhoGAP  30 rvkelreafdkgkavdsdleeedvhavaslLKrfLrelpepLltkelyeelieaakse 87 
                 rv el+ +f ++k+                                           +
  CCE28120.1 597 RVAELERQFCTDKDI------------------------------------------K 612
                 233333333222222..........................................2 PP

  == domain 2  score: 152.3 bits;  conditional E-value: 3.7e-48
                  BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCTTTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHHHHHHH CS
      RhoGAP    1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavdsdleeedvhavaslLKrfLrelpepLltkelyeelieaaksedeeerlealk 97  
                  P+++++c+e++e rg+d+egiyR+ g +++v+++++ fdk+++ d ++ + d+ av+s+LK+++r+lp pLlt++ y+ ++e + + de er  +l+
  CCE28120.1  983 PAVITRCIEEVELRGMDQEGIYRKTGGNSQVNMIKDGFDKNENFDISDPDMDITAVTSVLKQYFRKLPIPLLTFDVYDGVLESNAIVDEAERCLHLR 1079
                  89*********************************************************************************************** PP

                  HHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT- CS
      RhoGAP   98 ellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrp 146 
                  + + ++P+ +rd+L++L+ hL+rva+++ en M++knLa+vfaPt++r+
  CCE28120.1 1080 KSFASMPERHRDCLEFLMFHLHRVAQREPENLMSPKNLAVVFAPTIMRD 1128
                  ***********************************************97 PP

>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.3      0.14   3.2e+02      27      55 ..      23      52 ..      20      53 .. 0.85
   2 !   18.4   6.9   8.1e-07    0.0018       1      55 [.      54     106 ..      54     109 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.14
                SB-TTT-SB-CTT..CEEETTEEEEHHHHH CS
         LIM 27 FtCsdCqkeLkegs.fyekdgklyCkkdyl 55
                F C  C++   + + + + dgkl C+++ +
  CCE28120.1 23 FPCRGCGELDCDANlLLLGDGKLICNNCTY 52
                889999998888888999999******965 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 8.1e-07
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT.CEEETTEEEEHHHHH CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegsfyekdgklyCkkdyl 55 
                 C +C++ki++  ++    ++ +   CF+C +C++++++ +f+ + + ++C  ++ 
  CCE28120.1  54 CTACGNKIEELAIL--TGEQAFCATCFRCRNCKRKIENLRFVRTGQGIFCMGCHE 106
                 9********77777..8**********************97777778****9996 PP

>> GCP_N_terminal  Gamma tubulin complex component N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.2   0.00061       1.4      77     134 ..     584     658 ..     567     705 .. 0.75
   2 ?   -0.9   0.1      0.44   9.8e+02      57     111 ..     666     715 ..     661     738 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00061
  GCP_N_terminal  77 aaaldeelteyyrliaqlEsqlledsesi..........ltLlrlevwlqetllllrvLanlveeve.......k 134
                     a  l+++l++  + +a+lE q+++d++ +           t++ l+++++ ++++l+vLa  ve+++        
      CCE28120.1 584 ATVLKRQLRNSEQRVAELERQFCTDKDIKnlnkklvekrKTVSVLDTQTEIMIRQLEVLAGYVERAKetktpvdP 658
                     66899********************9855*************************************944444440 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.44
  GCP_N_terminal  57 lrkfveevsrsesglvlqalaaaldeelteyyrliaqlEsqlledsesiltLlrl 111
                     +++fv++        v++a ++ ++++ +e ++li + E+  l+++   l   +l
      CCE28120.1 666 IKEFVKK-----LDSVKEAMCETIEALHEERDQLIEEKEQAALDRDRALLEFEQL 715
                     7788866.....78899******************99999999887654444444 PP

>> Med11  Mediator complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   8.2e-05      0.18      32      87 ..     632     701 ..     589     782 .. 0.68
   2 ?   -2.4   0.7       2.8   6.2e+03      94      95 ..     888     895 ..     814     930 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.2e-05
       Med11  32 p..............eqepaseseeaqkeafkaatstffstLssvdvrLrrqIyaLeeagiitlessaaa 87 
                                e  ++ +++ +++e  ++a ++f++ L+sv+  + + I aL e++    e++++a
  CCE28120.1 632 TeimirqlevlagyvERAKETKTPVDPRELEDSAIKEFVKKLDSVKEAMCETIEALHEERDQLIEEKEQA 701
                 25555556666677788889999999999*****************************654322333222 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.8
       Med11  94 a......k 95 
                 +      +
  CCE28120.1 888 NnntmatN 895
                 12222231 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.3       2.7   6.1e+03      29      34 ..      25      30 ..      15      34 .. 0.66
   2 ?    8.4   0.9    0.0011       2.4       6      32 ..      52      77 ..      51      77 .. 0.77
   3 ?    8.7   0.9   0.00083       1.9       6      35 ..      78     108 ..      78     113 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.7
  Zn-ribbon_8 29 CPeCgs 34
                 C  Cg+
   CCE28120.1 25 CRGCGE 30
                 666665 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0011
  Zn-ribbon_8  6 YrCeeCghefevlqsisdaplta.CPeC 32
                 Y C++Cg++ e+l+  +  + +a C +C
   CCE28120.1 52 YDCTACGNKIEELAILT-GE-QAfCATC 77
                 99**********98444.44.4449888 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00083
  Zn-ribbon_8   6 YrCeeCghefevlqsisdapltaCPeCgs.e 35 
                  +rC++C+++ e l+ +     + C  C++  
   CCE28120.1  78 FRCRNCKRKIENLRFVRTGQGIFCMGCHEtI 108
                  8**********999877777777****9842 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.0   0.00019      0.43       2      53 ..     595     645 ..     588     658 .. 0.86
   2 ?   -3.8   0.2         8   1.8e+04      18      29 ..     721     732 ..     712     740 .. 0.42
   3 ?    1.4   0.1      0.22     5e+02      24      44 ..     823     843 ..     820     859 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX   2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53 
                 e+r+ eLE +   +++ i+ Ln+ ++e +++++ l +q + + ++l+ l+  
  CCE28120.1 595 EQRVAELERQ-FCTDKDIKNLNKKLVEKRKTVSVLDTQTEIMIRQLEVLAGY 645
                 89*****966.578999*****************************877655 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 8
                 HHHHHHHHHHHH CS
        SlyX  18 tieeLndvvaeq 29 
                 ++ ++n+ +++q
  CCE28120.1 721 QLADMNNDLTHQ 732
                 222222222222 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHHHHHHHHHH CS
        SlyX  24 dvvaeqqqqidrlqrqlrlla 44 
                 +vva qq + +rlq+q + la
  CCE28120.1 823 AVVAFQQNDRERLQQQSQGLA 843
                 58899***********98876 PP

>> zf-CHY  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.5    0.0099        22      18      72 ..      21      77 ..      16      78 .. 0.84
   2 ?    6.4   4.5    0.0054        12      14      50 ..      72     107 ..      65     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0099
      zf-CHY 18 klyaCreCHeeledhelerlevkevlcllCeteqekavlCkkCkkefaey........fCpiC 72
                ++++Cr C e  +d +l  l   +++c +C+        C++C+++++e         fC +C
  CCE28120.1 21 DVFPCRGCGELDCDANLLLLGDGKLICNNCTY------DCTACGNKIEELailtgeqaFCATC 77
                68*******98899999999999999999987......5****99777776677776689988 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0054
      zf-CHY  14 pcCkklyaCreCHeeledhelerlevkevlcllCete 50 
                 + C +++ Cr+C ++ e+ ++ r+ +  + c+ C+++
  CCE28120.1  72 AFCATCFRCRNCKRKIENLRFVRTGQG-IFCMGCHET 107
                 67************9999999999877.78****975 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  10.6    0.0015       3.4      12     124 ..     626     731 ..     621     740 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
      APG6_N  12 eeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelql 110
                 + ld+q e + ++ + +  + ++ k++k+  +  + e+ +++e ++kl++ +e+++e +++l +er++l +e ++++        + +r + e+ +l+ 
  CCE28120.1 626 SVLDTQTEIMIRQLEVLAGYVERAKETKTPVDPRELEDSAIKEFVKKLDSVKEAMCETIEALHEERDQLIEEKEQAAL-------DRDRALLEFEQLSS 717
                 568999999999999999999999999776665666666777778888888888888888888888887655444332.......22334444444444 PP

      APG6_N 111 elleleeeldslea 124
                 + ++l +  + l++
  CCE28120.1 718 KNAQLADMNNDLTH 731
                 44444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1502  (0.0837749); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.85u 0.26s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 7779.44
//
Query:       CCE28121.1  [L=218]
Description: uncharacterized protein CPUR_01595 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-05   22.9  30.1     0.0019   18.2  30.1    2.2  1  rRNA_processing  rRNA processing


Domain annotation for each model (and alignments):
>> rRNA_processing  rRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2  30.1   1.1e-07    0.0019      14     147 ..      38     214 ..      16     215 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.1e-07
  rRNA_processing  14 kskeikkeltrkarlrkeYfKllkkegleeeekvakeaekskneeeeskkskkeareeeek................................. 74 
                      k+ +ikk+l +ka+++keY K   +e+ ++++++ k+ + ++++    ++  +  re+e++                                 
       CCE28121.1  38 KVTKIKKDLIHKAKVKKEYAKIKSREQTKQQSTTDKNVDDDADNGG-RDQGGDTGREREGAqeepqekmhptrelmlkdedmaqvgatassdat 130
                      999*******************999999988774444333332222.222222222222224457799************************** PP

  rRNA_processing  75 ..............lkfkerkeivkerkeekreekleavqeklerikalekkkkerekrkkkLskk.TkkGQPvMgprienLLdKIkk 147
                                      ++++  +++e+++e+++++ e +++ +er+    +k  +r+k kk + k   + G  + g   + LLdK+k+
       CCE28121.1 131 ttardgsrrrtrrpGYYDKQLSKAEEKRKEEEQRRMEMQRRGEERE----RKIADRQKFKKAMAKTvGRDGKKKLGRESSILLDKVKR 214
                      ******9988887666666666666776777777776666666665....88888888888888863588999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1916  (0.106866); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 1647.40
//
Query:       CCE28122.1  [L=440]
Description: uncharacterized protein CPUR_01596 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-32  111.7   0.6    1.8e-32  111.7   0.6    2.2  3  DUF4210         Domain of unknown function (DUF4210)
    2.3e-24   85.3   0.2    4.7e-24   84.3   0.2    1.6  1  Chromosome_seg  Chromosome segregation during meiosis


Domain annotation for each model (and alignments):
>> DUF4210  Domain of unknown function (DUF4210)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.6     2e-36   1.8e-32       1      68 []       1      75 [.       1      75 [. 0.96
   2 ?   -2.2   0.1      0.74   6.6e+03      37      59 ..     210     234 ..     206     241 .. 0.63
   3 ?   -3.0   0.0       1.3   1.1e+04      11      25 ..     319     333 ..     317     334 .. 0.78

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 2e-36
     DUF4210  1 lvgsfeeSlLsgrmstlpskpleFvaeiGvlgsgkcksslrcPkhlklpfsavfysledsdkss.......sPYv 68
                +vgs+eeS+L+grmst+pskp++F+a+iGvlg+g+ckss+rcP+h++lpf+av+ys++++++s        sPYv
  CCE28122.1  1 MVGSYEESILRGRMSTNPSKPFDFLAQIGVLGRGSCKSSMRCPAHVTLPFPAVYYSYSSTSHSRsssndgpSPYV 75
                9*********************************************************9999844789999***8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.74
     DUF4210  37 ksslrcPkhlkl..pfsavfysled 59 
                 ++ lr+  hl++  p +  fy +++
  CCE28122.1 210 RPMLRYLVHLHIccPSKGRFYLYKS 234
                 5677777777762234456777765 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.3
     DUF4210  11 sgrmstlpskpleFv 25 
                 sg  +tlp+ p++F 
  CCE28122.1 319 SGAGNTLPVDPIPFR 333
                 6666899*****995 PP

>> Chromosome_seg  Chromosome segregation during meiosis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.2   5.2e-28   4.7e-24       1      55 []     212     264 ..     212     264 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 5.2e-28
  Chromosome_seg   1 vLRYaiHLrflcpksgRiYLykdiRvVFarrapdsdegkLrsetetPsnpryspi 55 
                     +LRY++HL+++cp++gR+YLyk+iRvVFa+r pd +e kLr+et+ P +pr++p+
      CCE28122.1 212 MLRYLVHLHICCPSKGRFYLYKSIRVVFANRVPDGKE-KLRNETTWP-EPRFTPY 264
                     7************************************.*********.8***996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3268.03
//
Query:       CCE28123.1  [L=1189]
Description: related to coxI translation protein CYA5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-16   59.7   1.1      1e-06   28.8   0.0    7.1  8  PPR_2     PPR repeat family
    4.4e-16   57.9   5.4    0.00089   19.3   0.0    8.8 10  PPR       PPR repeat
    2.7e-06   27.3   0.0     0.0017   18.4   0.0    3.8  4  PPR_3     Pentatricopeptide repeat domain
    4.1e-05   23.2   2.5       0.46   10.2   0.0    5.4  7  PPR_1     PPR repeat
    0.00013   21.4   0.5       0.34   10.2   0.1    3.3  3  PPR_long  Pentacotripeptide-repeat region of PRORP
    0.00019   22.0  10.5         25    6.0   0.1    9.1 11  TPR_14    Tetratricopeptide repeat
    0.00038   20.3   0.0      0.074   12.9   0.0    2.9  2  ATP13     Mitochondrial ATPase expression
     0.0024   18.5   0.0        9.4    7.0   0.0    4.6  3  TPR_16    Tetratricopeptide repeat
     0.0035   17.8   5.9         13    6.4   0.1    5.5  6  TPR_19    Tetratricopeptide repeat
     0.0051   16.8   0.2         52    4.2   0.0    4.7  5  TPR_7     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.2   5.8e+03      12      26 ..     272     286 ..     270     287 .. 0.87
   2 ?    1.7   0.0      0.17   3.1e+02      10      38 ..     536     565 ..     532     567 .. 0.88
   3 !   28.8   0.0   5.7e-10     1e-06       1      44 [.     563     605 ..     563     610 .. 0.90
   4 ?    5.0   0.0     0.016        29       8      32 ..     639     663 ..     639     668 .. 0.84
   5 !   13.2   0.0   4.3e-05     0.077       4      48 ..     669     713 ..     666     715 .. 0.90
   6 ?    3.9   0.0     0.034        61       9      33 ..     709     733 ..     705     736 .. 0.84
   7 ?   -0.8   0.0         1   1.9e+03       8      35 ..     744     771 ..     741     772 .. 0.89
   8 ?    0.4   0.0      0.44   7.8e+02       8      26 ..     888     906 ..     885     908 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.2
       PPR_2  12 glckkgkveeAfklf 26 
                  ++++g++  A++l+
  CCE28123.1 272 LHLRAGDLTAALELY 286
                 6799**********9 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.17
       PPR_2  10 IsglckkgkveeAfklfneMkk.rglePns 38 
                 ++++++ g+v  A k f  M +  +++P+ 
  CCE28123.1 536 LNAFARTGDVAGAEKEFTTMIEtYKVTPDI 565
                 899*****************9955999985 PP

  == domain 3  score: 28.8 bits;  conditional E-value: 5.7e-10
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysil 44 
                 pd+ ++Ntl++ + k g++  A++ fn+ k++  +P+++Ty  +
  CCE28123.1 563 PDIDSWNTLLKSYTKVGDYTRALQCFNDLKQKH-KPDAFTYAQV 605
                 8999**************************776.5******766 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.016
       PPR_2   8 tlIsglckkgkveeAfklfneMkkr 32 
                 +l +++c++ ++e+A+k+  e  kr
  CCE28123.1 639 ALVTAYCHNDRLEDALKICVEFSKR 663
                 5789*************97776666 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 4.3e-05
       PPR_2   4 vtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                 v++N l+    +kg+++++++l++ M ++g+  +  T   l+ ++
  CCE28123.1 669 VVWNQLLYFNGQKGDLHKCYDLLKSMMDHGVDWDHQTAEFLLGAM 713
                 89999998889**************************98888765 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.034
       PPR_2   9 lIsglckkgkveeAfklfneMkkrg 33 
                 l+ ++++ g+ve Af+l++  + +g
  CCE28123.1 709 LLGAMVHVGQVELAFELLETARCNG 733
                 78999************99766666 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 1
       PPR_2   8 tlIsglckkgkveeAfklfneMkkrgle 35 
                 ++++g ++ g+++   k+++ M++ g e
  CCE28123.1 744 VVMTGAVRLGRISLVTKIMSSMRSAGME 771
                 689999****************999875 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.44
       PPR_2   8 tlIsglckkgkveeAfklf 26 
                 +l++g++++++ +  ++l+
  CCE28123.1 888 ALMTGYLQDNNGDGVYELW 906
                 89*********99999997 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.51   9.1e+02       8      24 ..     271     287 ..     268     288 .. 0.86
   2 ?   -0.6   0.0       1.2   2.1e+03       7      21 ..     536     550 ..     532     557 .. 0.84
   3 !   19.3   0.0     5e-07   0.00089       2      29 ..     567     594 ..     566     595 .. 0.95
   4 ?   -2.4   0.0       4.4   7.9e+03       2      25 ..     601     624 ..     600     629 .. 0.83
   5 !    9.6   0.0   0.00063       1.1       5      25 ..     639     659 ..     637     664 .. 0.87
   6 !   13.0   0.0   5.3e-05     0.095       1      31 []     669     699 ..     669     699 .. 0.96
   7 ?    1.9   0.0      0.18   3.3e+02       6      24 ..     709     727 ..     708     733 .. 0.84
   8 ?    2.4   0.0      0.13   2.3e+02       5      30 ..     744     769 ..     741     770 .. 0.91
   9 ?    2.2   0.0      0.15   2.6e+02       4      23 ..     887     906 ..     884     908 .. 0.90
  10 ?   -3.2   0.0       7.6   1.4e+04      14      23 ..     983     992 ..     982     993 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.51
         PPR   8 sgycknGkleeAlelfk 24 
                 s + ++G+l  Alel++
  CCE28123.1 271 SLHLRAGDLTAALELYR 287
                 56789**********97 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.2
         PPR   7 IsgycknGkleeAle 21 
                 ++++++ G++  A++
  CCE28123.1 536 LNAFARTGDVAGAEK 550
                 799******999986 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 5e-07
         PPR   2 tynslIsgycknGkleeAlelfkeMkek 29 
                 ++n+l+++y k G++  Al++f+++k+k
  CCE28123.1 567 SWNTLLKSYTKVGDYTRALQCFNDLKQK 594
                 8***********************9986 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 4.4
         PPR   2 tynslIsgycknGkleeAlelfke 25 
                 ty  ++   ++ G+l  ++++f++
  CCE28123.1 601 TYAQVMALAARRGDLATVIDFFDQ 624
                 77778888899****999999986 PP

  == domain 5  score: 9.6 bits;  conditional E-value: 0.00063
         PPR   5 slIsgycknGkleeAlelfke 25 
                 +l+ +yc+n +le+Al++  e
  CCE28123.1 639 ALVTAYCHNDRLEDALKICVE 659
                 6999*************9766 PP

  == domain 6  score: 13.0 bits;  conditional E-value: 5.3e-05
         PPR   1 vtynslIsgycknGkleeAlelfkeMkekGi 31 
                 v++n l+   +++G+l+++ +l+k M ++G+
  CCE28123.1 669 VVWNQLLYFNGQKGDLHKCYDLLKSMMDHGV 699
                 78**************************997 PP

  == domain 7  score: 1.9 bits;  conditional E-value: 0.18
         PPR   6 lIsgycknGkleeAlelfk 24 
                 l+ + ++ G++e A+el++
  CCE28123.1 709 LLGAMVHVGQVELAFELLE 727
                 6789999**********98 PP

  == domain 8  score: 2.4 bits;  conditional E-value: 0.13
         PPR   5 slIsgycknGkleeAlelfkeMkekG 30 
                 +++ g ++ G+++ + +++  M++ G
  CCE28123.1 744 VVMTGAVRLGRISLVTKIMSSMRSAG 769
                 689999*****************998 PP

  == domain 9  score: 2.2 bits;  conditional E-value: 0.15
         PPR   4 nslIsgycknGkleeAlelf 23 
                 ++l+ gy + ++ + + el+
  CCE28123.1 887 SALMTGYLQDNNGDGVYELW 906
                 79**************9997 PP

  == domain 10  score: -3.2 bits;  conditional E-value: 7.6
         PPR  14 GkleeAlelf 23 
                 G +e A+el 
  CCE28123.1 983 GHWERAMELC 992
                 89*****995 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0003      0.54      19      60 ..     533     575 ..     530     576 .. 0.88
   2 !   18.4   0.0   9.5e-07    0.0017      11      58 ..     561     607 ..     555     612 .. 0.90
   3 ?   -1.5   0.0       1.5   2.7e+03      12      40 ..     631     659 ..     621     671 .. 0.77
   4 ?    3.8   0.0     0.035        62       2      45 ..     690     733 ..     689     737 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0003
       PPR_3  19 thLLtayanagnkklalevlermkk.kgikPtvvtyNailgvi 60 
                  + L+a+a++g+   a++ +  m +  +++P ++++N +l+ +
  CCE28123.1 533 RSTLNAFARTGDVAGAEKEFTTMIEtYKVTPDIDSWNTLLKSY 575
                 56799***************9996626*************987 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 9.5e-07
       PPR_3  11 ikldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailg 58 
                 + +d+  +++LL+ y ++g++ +al+ ++ +k+k+ kP   ty  ++ 
  CCE28123.1 561 VTPDIDSWNTLLKSYTKVGDYTRALQCFNDLKQKH-KPDAFTYAQVMA 607
                 6799*****************************99.999999988876 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.5
       PPR_3  12 kldvvtYthLLtayanagnkklalevler 40 
                  ++  +  +L tay  +  +++al++  +
  CCE28123.1 631 AISKEMALALVTAYCHNDRLEDALKICVE 659
                 5555566799**************99765 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.035
       PPR_3   2 ilremerkgikldvvtYthLLtayanagnkklalevlermkkkg 45 
                 +l+ m + g+  d  t   LL a++ +g  +la+e le  + +g
  CCE28123.1 690 LLKSMMDHGVDWDHQTAEFLLGAMVHVGQVELAFELLETARCNG 733
                 68889999***************************999876665 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.1   5.6e+03      19      30 ..     275     286 ..     275     287 .. 0.89
   2 ?   -0.9   0.0       0.8   1.4e+03      15      33 ..     537     555 ..     536     556 .. 0.84
   3 !   10.2   0.0   0.00026      0.46       3      32 ..     561     590 ..     560     592 .. 0.91
   4 ?    1.0   0.0       0.2   3.5e+02       3      11 ..     595     603 ..     593     624 .. 0.72
   5 !    5.9   0.1    0.0057        10      13      29 ..     640     656 ..     639     660 .. 0.88
   6 ?   -2.9   0.0       3.3     6e+03      20      33 ..     681     694 ..     680     695 .. 0.89
   7 ?   -1.5   0.0       1.1   2.1e+03      21      31 ..     717     727 ..     716     729 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.1
                 HTS-HHHHHHHH CS
       PPR_1  19 kaGrvdeAfelf 30 
                 +aG++  A+el 
  CCE28123.1 275 RAGDLTAALELY 286
                 89*******996 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.8
                 HHHHHTS-HHHHHHHHHHH CS
       PPR_1  15 dGlCkaGrvdeAfelfdeM 33 
                 +++ + G+v  A++ f  M
  CCE28123.1 537 NAFARTGDVAGAEKEFTTM 555
                 8999********9977776 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00026
                 ----HHHHHHHHHHHHHTS-HHHHHHHHHH CS
       PPR_1   3 lkPdvvTYNtLIdGlCkaGrvdeAfelfde 32 
                 + Pd+ ++NtL++++ k G+  +A++ f++
  CCE28123.1 561 VTPDIDSWNTLLKSYTKVGDYTRALQCFND 590
                 67**********************998886 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.2
                 ----HHHHH CS
       PPR_1   3 lkPdvvTYN 11 
                 +kPd++TY 
  CCE28123.1 595 HKPDAFTYA 603
                 79******6 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.0057
                 HHHHHHHTS-HHHHHHH CS
       PPR_1  13 LIdGlCkaGrvdeAfel 29 
                 L+ ++C + r+++A+++
  CCE28123.1 640 LVTAYCHNDRLEDALKI 656
                 899***********997 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 3.3
                 TS-HHHHHHHHHHH CS
       PPR_1  20 aGrvdeAfelfdeM 33 
                 +G++++ ++l++ M
  CCE28123.1 681 KGDLHKCYDLLKSM 694
                 89*********999 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 1.1
                 S-HHHHHHHHH CS
       PPR_1  21 GrvdeAfelfd 31 
                 G v+ Afel++
  CCE28123.1 717 GQVELAFELLE 727
                 8999*****98 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.6   6.5e+03      23      34 ..     275     286 ..     274     288 .. 0.88
   2 !    8.4   0.0    0.0007       1.3     101     187 ..     540     626 ..     532     640 .. 0.78
   3 !   10.2   0.1   0.00019      0.34      71     187 ..     615     730 ..     600     736 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.6
                 HHT-HHHHHHHH CS
    PPR_long  23 kekDaaaAlely 34 
                 +++D++aAlely
  CCE28123.1 275 RAGDLTAALELY 286
                 689********9 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0007
                 HHTT-HHHHHHHHHHH.HHH-S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
    PPR_long 101 aakedgdlafelvkem.ekagvsPrLRsyaPaLaayckagdadkaleveehlkasgveleEaelaaLLkvsakagredkvYelLhklr 187
                 a ++d   a++  ++m e+++v+P + s++ +L +y+k+gd  +al+  + lk++  +++   +a  + ++a+ g+   v +++++ +
  CCE28123.1 540 ARTGDVAGAEKEFTTMiETYKVTPDIDSWNTLLKSYTKVGDYTRALQCFNDLKQKH-KPDAFTYAQVMALAARRGDLATVIDFFDQSQ 626
                 55677777887777774699**************************9999987654.7777778888888888887777777777665 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH.-S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----HHHHHHHHH CS
    PPR_long  71 largfevfeamkakgvspnEatvtalarlaaakedgdlafelvkemeka.gvsPrLRsyaPaLaayckagdadkaleveehlkasgveleEaelaaLLk 168
                 la++   f++ +++ ++ +  +  al+     ++  + a ++  e++k    sP    ++ +L+   ++gd+ k++   + +  +gv+ + +  + LL 
  CCE28123.1 615 LATVIDFFDQSQNDRIAISKEMALALVTAYCHNDRLEDALKICVEFSKRsATSPV--VWNQLLYFNGQKGDLHKCYDLLKSMMDHGVDWDHQTAEFLLG 711
                 5667777888888888877777777777777778888888888888654145665..47889999999******************************* PP

                 HHHHTT-HHHHHHHHHHHH CS
    PPR_long 169 vsakagredkvYelLhklr 187
                 + ++ g+ +  +elL+  r
  CCE28123.1 712 AMVHVGQVELAFELLETAR 730
                 **********999999776 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.014        25       7      28 ..     269     290 ..     261     300 .. 0.87
   2 ?   -0.9   0.3       2.3   4.2e+03      16      30 ..     378     392 ..     363     399 .. 0.80
   3 ?   -4.0   0.0        10   1.8e+04      16      29 ..     472     485 ..     472     491 .. 0.75
   4 ?   -0.5   0.0       1.8   3.2e+03       6      33 ..     497     524 ..     493     527 .. 0.83
   5 ?    1.5   0.0      0.39   7.1e+02       9      31 ..     537     559 ..     533     572 .. 0.81
   6 ?    3.5   0.0     0.092   1.6e+02       4      40 ..     568     605 ..     565     610 .. 0.77
   7 ?    4.6   0.0     0.041        73       3      41 ..     636     674 ..     634     677 .. 0.90
   8 ?   -2.2   0.0         6   1.1e+04       8      27 ..     710     729 ..     703     731 .. 0.83
   9 ?    1.5   0.0      0.41   7.4e+02       7      35 ..     848     876 ..     842     878 .. 0.89
  10 ?   -2.6   0.0         8   1.4e+04      14      26 ..     982     994 ..     973    1001 .. 0.77
  11 ?   -2.1   0.1       5.7     1e+04       8      37 ..    1040    1069 ..    1035    1071 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.014
      TPR_14   7 laeallalGdpdeAiallrral 28 
                 + +++l++Gd+ +A++l+r  l
  CCE28123.1 269 AFSLHLRAGDLTAALELYRMGL 290
                 56789*************9876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.3
      TPR_14  16 dpdeAiallrralal 30 
                 d ++ +++lrr+la+
  CCE28123.1 378 DSRRGLEALRRWLAQ 392
                 567789999999997 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 10
      TPR_14  16 dpdeAiallrrala 29 
                 dp++ ++++r++ +
  CCE28123.1 472 DPEGLAEVYRDWHQ 485
                 67888999999976 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.8
      TPR_14   6 alaeallalGdpdeAiallrralalaPd 33 
                 ++++++ a Gd+ +  al  r+  ++P+
  CCE28123.1 497 KYLKFYSACGDTSAVQALWARYSTKFPE 524
                 78999999***99999999999888886 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.39
      TPR_14   9 eallalGdpdeAiallrralala 31 
                  a+++ Gd ++A++ +  +++++
  CCE28123.1 537 NAFARTGDVAGAEKEFTTMIETY 559
                 6899************9999975 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.092
      TPR_14   4 llalaeallalGdpdeAiallrralala.Pddaeawll 40 
                 +  l++ +   Gd+ +A+++++++ +++ Pd  ++   
  CCE28123.1 568 WNTLLKSYTKVGDYTRALQCFNDLKQKHkPDAFTYAQV 605
                 66788999999************977764666555554 PP

  == domain 7  score: 4.6 bits;  conditional E-value: 0.041
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 + lal+ a+ +++++++A++++ +  ++  +++++w +l
  CCE28123.1 636 MALALVTAYCHNDRLEDALKICVEFSKRSATSPVVWNQL 674
                 6799********************999999999999776 PP

  == domain 8  score: -2.2 bits;  conditional E-value: 6
      TPR_14   8 aeallalGdpdeAiallrra 27 
                 + a+ + G+ + A +ll+ a
  CCE28123.1 710 LGAMVHVGQVELAFELLETA 729
                 567788999999**999976 PP

  == domain 9  score: 1.5 bits;  conditional E-value: 0.41
      TPR_14   7 laeallalGdpdeAiallrralalaPdda 35 
                 ++++ll+++++ + +++  ++++++P++ 
  CCE28123.1 848 ALKLLLQQRRYTDVETIMSAYVEAFPEHS 876
                 467899********************976 PP

  == domain 10  score: -2.6 bits;  conditional E-value: 8
      TPR_14  14 lGdpdeAiallrr 26 
                 lG +++A++l++ 
  CCE28123.1 982 LGHWERAMELCEH 994
                 7999999999986 PP

  == domain 11  score: -2.1 bits;  conditional E-value: 5.7
      TPR_14    8 aeallalGdpdeAiallrralalaPddaea 37  
                  +e+  ++   d  +  l+++ +++P+  +a
  CCE28123.1 1040 LEFRKRAALSDSIASQLQAIERRHPKLHRA 1069
                  566677777888888999999999987665 PP

>> ATP13  Mitochondrial ATPase expression
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.024        42      42      85 ..     553     596 ..     542     612 .. 0.81
   2 !   12.9   0.0   4.1e-05     0.074      48      99 ..     628     676 ..     616     680 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.024
       ATP13  42 tkvksdsplyPtselLkaivssfsynneiesAlklvdkfskkYp 85 
                 t++ ++ ++ P+ +   ++++s+ + +++ +Al+  +++ +k +
  CCE28123.1 553 TTMIETYKVTPDIDSWNTLLKSYTKVGDYTRALQCFNDLKQKHK 596
                 4445566778***************************9998876 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.1e-05
       ATP13  48 splyPtselLkaivssfsynneiesAlklvdkfskkYpeielkkefWeelle 99 
                 +++  + e+  a+v+++++n+++e Alk+  +fsk+      +  +W++ll+
  CCE28123.1 628 DRIAISKEMALALVTAYCHNDRLEDALKICVEFSKRSA---TSPVVWNQLLY 676
                 555556677789**********************9977...66789999986 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.059   1.1e+02      44      59 ..     273     288 ..     269     293 .. 0.69
   2 !    7.0   0.0    0.0052       9.4       5      66 ..     537     598 ..     535     600 .. 0.90
   3 ?    1.3   0.0       0.3   5.4e+02       5      32 ..     850     877 ..     847     880 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.059
      TPR_16  44 alrqgrlaeAaalyra 59 
                 +lr+g+l++A++lyr 
  CCE28123.1 273 HLRAGDLTAALELYRM 288
                 5677777777777765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0052
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal.raapd 66 
                 +a++r gd + A++ +++ ++ ++++P + ++++ l  ++ + g++++A++ ++ +  ++ pd
  CCE28123.1 537 NAFARTGDVAGAEKEFTTMIETYKVTP-DIDSWNTLLKSYTKVGDYTRALQCFNDLKqKHKPD 598
                 688999*********************.79*******************99888877666666 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.3
      TPR_16   5 raalragdyddAaaaleaalkrdpssPd 32 
                 +++l++++y+d +    a+++++p++++
  CCE28123.1 850 KLLLQQRRYTDVETIMSAYVEAFPEHSE 877
                 689********************66554 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.1   7.3e+03      41      57 ..     246     262 ..     245     271 .. 0.73
   2 ?    0.3   0.1      0.57     1e+03       2      15 ..     274     287 ..     273     290 .. 0.87
   3 ?   -2.4   0.4       3.9   6.9e+03      23      54 ..     360     389 ..     352     395 .. 0.69
   4 ?    5.9   0.0      0.01        19       5      66 ..     543     607 ..     540     609 .. 0.81
   5 !    6.4   0.1    0.0071        13       3      48 ..     611     657 ..     608     672 .. 0.82
   6 ?    2.3   0.0      0.14   2.4e+02      33      60 ..     850     877 ..     838     881 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.1
      TPR_19  41 ldeAealLdalpeedpd 57 
                 ++ A a+L ++p +  d
  CCE28123.1 246 VNRALAILHQIPTQLWD 262
                 57788999999877655 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.57
      TPR_19   2 laegdyaeAlalle 15 
                 l +gd+++Al+l++
  CCE28123.1 274 LRAGDLTAALELYR 287
                 679********996 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.9
      TPR_19  23 knaearllLAeallalgqldeAealLdalpee 54 
                 +++ea++  Aea  +++ +++ ++ L+al ++
  CCE28123.1 360 QYLEAKA--AEAVKSMNLYADSRRGLEALRRW 389
                 4556666..77777777777777777777665 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.01
      TPR_19   5 gdyaeAlalleqalqedpk..naearllLAeallalgqldeAealLdalpeedpdd.aryasLlA 66 
                 gd a A + ++ +++ +    + + +  L + + + g+++ A ++ ++l ++ + d   ya+++A
  CCE28123.1 543 GDVAGAEKEFTTMIETYKVtpDIDSWNTLLKSYTKVGDYTRALQCFNDLKQKHKPDaFTYAQVMA 607
                 67777777777776665554466677789999********************9999999999998 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0071
      TPR_19   3 aegdyaeAlalleqa.lqedpknaearllLAeallalgqldeAealL 48 
                  +gd+a  ++++ q   +  + + e +l+L+ a+  + +l++A +++
  CCE28123.1 611 RRGDLATVIDFFDQSqNDRIAISKEMALALVTAYCHNDRLEDALKIC 657
                 579999999999996233344499*******************9986 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.14
      TPR_19  33 eallalgqldeAealLdalpeedpddar 60 
                 ++ll++ ++++ e +++a+ e++p +++
  CCE28123.1 850 KLLLQQRRYTDVETIMSAYVEAFPEHSE 877
                 689******************9998765 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         6   1.1e+04       8      19 ..     173     184 ..     170     187 .. 0.65
   2 ?    3.0   0.0     0.072   1.3e+02       7      24 ..     271     288 ..     271     303 .. 0.89
   3 ?    3.3   0.0     0.058     1e+02       8      22 ..     574     588 ..     567     591 .. 0.89
   4 ?   -2.5   0.0         4   7.1e+03      11      24 ..     611     624 ..     607     654 .. 0.74
   5 ?    4.2   0.0     0.029        52      12      26 ..     982     996 ..     977    1002 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6
       TPR_7   8 lysrlGdyeeAi 19 
                 + ++lG+ + A+
  CCE28123.1 173 ALHNLGESDSAA 184
                 666777777776 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.072
       TPR_7   7 rlysrlGdyeeAielyeq 24 
                 +l+ r Gd   A+ely+ 
  CCE28123.1 271 SLHLRAGDLTAALELYRM 288
                 589*************97 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.058
       TPR_7   8 lysrlGdyeeAiely 22 
                  y ++Gdy +A++++
  CCE28123.1 574 SYTKVGDYTRALQCF 588
                 5999********998 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 4
       TPR_7  11 rlGdyeeAielyeq 24 
                 r+Gd ++ i+++ q
  CCE28123.1 611 RRGDLATVIDFFDQ 624
                 67899999999988 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.029
       TPR_7  12 lGdyeeAielyeqsL 26 
                 lG++e+A el+e +L
  CCE28123.1 982 LGHWERAMELCEHHL 996
                 79**********966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.41
# Mc/sec: 8616.47
//
Query:       CCE28124.1  [L=243]
Description: uncharacterized protein CPUR_01598 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-11   44.2   0.1    6.9e-11   43.0   0.1    1.7  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    8.5e-11   42.1   0.1    1.9e-10   41.0   0.1    1.5  1  Acetyltransf_1   Acetyltransferase (GNAT) family
      8e-07   29.3   0.1    1.2e-06   28.7   0.1    1.2  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    1.1e-05   25.8   0.1    1.8e-05   25.1   0.1    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0037   16.9   0.0     0.0079   15.9   0.0    1.5  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.014   15.3   0.1      0.042   13.8   0.1    1.8  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
      0.036   14.0   0.1      0.085   12.8   0.1    1.6  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.1   2.7e-14   6.9e-11      34     138 .]      68     203 ..      28     203 .. 0.71

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 2.7e-14
  Acetyltransf_3  34 leeaeewlerawaeeseeegygwaivlkdt...g..v.iGsvglrdleeedee..............................aelgymlapsfw 92 
                     +e+ ++ l+ aw +      +g ai+l+++   g  + +G+ g++  +++d++                              a++g+ ++++++
      CCE28124.1  68 EEDMKAHLK-AWSN----ALLGVAICLREGvdgGgnApVGVDGMTTNQDDDGKtkraiqkntivgtmclrggstnaqtaqhrtAQMGISFGKQYQ 157
                     555555555.3544....34566666544432213433555555555555555555555555555555555555566688889************ PP

  Acetyltransf_3  93 gkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     gkGy++ea + ++++af++ gl+++   ++  N++ i +++++Gf+
      CCE28124.1 158 GKGYGREAINWMVDWAFRHAGLHTVSLAAASYNPRGIHLYQSMGFR 203
                     *********************************************6 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.1   7.4e-14   1.9e-10      41     117 .]     122     202 ..     107     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 7.4e-14
                     TTEEEEEEEEEEEET...TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  41 dgeliGfisllkipd...ekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklGF 117
                      ++++G+++l+       +++++++  ++   ++y+gkG+G++ ++ ++++a+++ g++ + la  + n + i+lY+ +GF
      CCE28124.1 122 KNTIVGTMCLRGGSTnaqTAQHRTAQMGISFGKQYQGKGYGREAINWMVDWAFRHaGLHTVSLAAASYNPRGIHLYQSMGF 202
                     579999998888888888777888888****************************999*****99999********88**9 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   4.7e-10   1.2e-06      58     153 ..     123     221 ..     118     222 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 4.7e-10
  Acetyltransf_4  58 drivGyaylg..qfkkr.akdwkaelsvylaerdnnkeglgrelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkng 148
                      +ivG++ l+    ++  a+   a + + +  ++ + +g+gre i+ +++ + +  ++++   + as n   i +++++GF+l g+ k+ i+   
      CCE28124.1 123 NTIVGTMCLRggSTNAQtAQHRTAQMGISFG-KQYQGKGYGREAINWMVDWAfRHAGLHTVSLAAASYNPRGIHLYQSMGFRLQGRKKETIYFDR 216
                     5677777665446677778889999999996.899**************9999****************************************** PP

  Acetyltransf_4 149 rwiDm 153
                      w+D+
      CCE28124.1 217 AWYDE 221
                     ****8 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   6.8e-09   1.8e-05      12      75 ..     123     203 ..     109     204 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 6.8e-09
                     TEEEEEEEEEEES.......TCTEE.....EEE-GGGTTSSHHHHHHHH......TTSEEEEEEEEE....THHHHHHHHHHTTEE CS
  Acetyltransf_7  12 gkivGfialslld.......aeitr.....laVdpeyrgkGiGraLlea......aekgiileqlel....naekaikfYeklGFe 75 
                     + ivG+++l   +       +   r     +   ++y+gkG+Gr+ ++       ++ g++  ++ l     +++ i++Y+++GF+
      CCE28124.1 123 NTIVGTMCLRGGStnaqtaqH---RtaqmgISFGKQYQGKGYGREAINWmvdwafRHAGLH--TVSLaaasYNPRGIHLYQSMGFR 203
                     566776666666666664431...23455688889*************6556544335643..3344333322499*********7 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.1e-06    0.0079      89     141 ..     154     206 ..     136     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.1e-06
                     HHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  89 aeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                     +++ gkg++++ ++ +v+++f++ +   v +     N r i+l++++Gf+ ++
      CCE28124.1 154 KQYQGKGYGREAINWMVDWAFRHAGLHTVSLAAASYNPRGIHLYQSMGFRLQG 206
                     5788**********************************************987 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   3.2e+03       5      22 ..      36      53 ..      32      91 .. 0.54
   2 ?   13.8   0.1   1.6e-05     0.042      61     114 ..     154     210 ..     108     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
  Acetyltransf_10  5 yseegietfkefispeal 22
                      ++e+i++f  +++++ +
       CCE28124.1 36 ENNEAIKAFLPQVEQDPV 53
                     566666666656555433 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.6e-05
  Acetyltransf_10  61 peyrgqGigkaLleaveee.aekdgikl.eltvnasp.yavpfYeklGFkavgeeqe 114
                      ++y+g+G+g++ ++ + +  ++++g+++ +l + + +   + +Y+++GF+  g+++e
       CCE28124.1 154 KQYQGKGYGREAINWMVDWaFRHAGLHTvSLAAASYNpRGIHLYQSMGFRLQGRKKE 210
                      89************999995667777756666665556889*********9987765 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   3.3e-05     0.085      28      80 ..     151     205 ..     137     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.3e-05
                 EE-GGG-SSSHHHHHHHHHHHHHHH.S-.S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  28 qvlpehrrrGlgsrlvkalakeiae.rg.ktvllvvvasNtpsirlyeklGfeki 80 
                    ++ +++G+g+  ++ +     + +g +tv+l ++  N + i+ly+++Gf++ 
  CCE28124.1 151 SFGKQYQGKGYGREAINWMVDWAFRhAGlHTVSLAAASYNPRGIHLYQSMGFRLQ 205
                 5567899******99999988665547747788889999**************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1875.59
//
Query:       CCE28125.1  [L=795]
Description: uncharacterized protein CPUR_01599 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-47  161.0   0.0    8.2e-47  160.1   0.0    1.5  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1   0.0   4.6e-51   8.2e-47       1     249 [.     168     558 ..     168     559 .. 0.94

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 4.6e-51
                     EEEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHHHHHHCHCH CS
  PI3_PI4_kinase   1 gsagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasveslrvaldkk 95 
                     gs+g+y+++d  ++   iv+vfk++dee+++ +npk+ k+ +++ +++++gr c+i++l + se+aa++ld++l ++ vp t  v  ++  ++++
      CCE28125.1 168 GSSGSYFARDPDGK---IVGVFKPKDEEPYAAGNPKWNKWIHRNLFPCCFGRACLIPNLSYVSEAAAYVLDHQLRTNLVPYTDVVWLSSKSFHYP 259
                     689***********...*********************************************************995555555555588999*** PP

                     CCHHHHHCCHHHHHHTSSTTHHHHHHHHHSSSHH............................................................. CS
  PI3_PI4_kinase  96 klkkekklkfekrtalkpksgllqeFvkkspsae............................................................. 129
                      +++ ++   +k+++l+pk g++q F k +++a+                                                             
      CCE28125.1 260 FWDRRSF--YRKKKQLPPKPGSFQVFLKGFKDANvflrehpwpdqywagfrtnesthrnrkrrwnescrpstsgspangdssddeaadatqdagg 352
                     **99998..9999********************9************************************************************* PP

                     ....HHHHH.HHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTS.................................................. CS
  PI3_PI4_kinase 130 ....ewlea.rkqFvrslaklsvldyilgngDRhldNilvdktsg.................................................. 169
                          w+e+  ++F+++l+kl++ldyi++n+DR+ldN++++ ++                                                   
      CCE28125.1 353 sprfVWTESiKQSFREELEKLVILDYIMRNTDRGLDNWMIKVDWEagkvsvvsdavhldmrasdhndddessrprpvqqeqmprsktsasypyrs 447
                     ********955669**************************8666677999999999999999999999999999999999999999999999999 PP

                     ...................EEEESSTTTCC....TCSHCSSSS.....-.SSS..SS.S-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHH CS
  PI3_PI4_kinase 170 ...................klihIDfGlil....pdewkllpf.....pqekv..Pf.rltrelvlaidpskdeglfresceealealrrdqnll 233
                                         + +ID+ l+     pd+w+ +pf     p +++  Pf + tr+++l++  ++++ ++ ++ + + +++  d+++ 
      CCE28125.1 448 qrpmkassgkkipaqepaiSIGAIDNSLSWpwkhPDAWRSFPFgwlflPVDLIgrPFsQKTRDHFLPL--LTSTAWWAQTQMALKRVFQVDEDFQ 540
                     999999999999999999999999999999******************7677788*************..************************* PP

                     HHHHHH..HHHHHCCSSC CS
  PI3_PI4_kinase 234 trllkk..avkdglilwe 249
                      r+++k  av++g+++++
      CCE28125.1 541 ERMFAKqiAVMKGQAWNV 558
                     **************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5772.42
//
Query:       CCE28126.1  [L=196]
Description: related to uncharacterized protein yqey [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-20   73.9   7.7    1.6e-20   73.6   7.7    1.1  1  YqeY             Yqey-like protein
  ------ inclusion threshold ------
      0.028   14.3   2.3       0.11   12.4   2.2    1.9  1  GatB_Yqey        GatB domain
      0.043   14.0   1.3       0.13   12.6   0.1    2.2  2  TetR_C_16        Tetracyclin repressor-like, C-terminal domai
       0.16   12.2   2.9       0.51   10.5   0.1    2.5  2  Phage_r1t_holin  Putative lactococcus lactis phage r1t holin


Domain annotation for each model (and alignments):
>> YqeY  Yqey-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   7.7   3.6e-24   1.6e-20       2     142 ..      45     193 ..      44     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 3.6e-24
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS-....----HHHH CS
        YqeY   2 eklkedlkeamkakdkerlstlrllkaaikqeevderkelsdeevlkvlakevkqRresieefekagRedlaekekaEievleeYlP....eqlseeei 96 
                 +k+k+dlk+am+akd+ rls+lr +++a  ++  +++   +d ++++++++  k  ++++e  ++agR+dl++ke + +++++eY+     + l e+e+
  CCE28126.1  45 QKIKADLKTAMRAKDTPRLSVLRAILSANLNASKTASPIQTDVQLVALIRRIQKSAQDAVEDAKSAGRDDLVNKEMEQVRIMDEYIAgsgvQTLGEAEL 143
                 79**************************9999999999899********************************************96555589****** PP

                 HHHHHHHHHHTT--...BGGGHHHHHHHHHHHHTTT.S-HHHHHHHHHHH CS
        YqeY  97 ealvkeaiaevgae...smkdmGkvmkalkpkvkGk.aDgkkvsalvkek 142
                 ++l ++ai++ +a+   +++ +G vmk l   ++Gk +D k++ a++ke+
  CCE28126.1 144 KTLAQDAIEASKAAgtaTKAIVGDVMKRLAGALEGKdVDRKALAAMIKEL 193
                 ********99866533377889*************955*********985 PP

>> GatB_Yqey  GatB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.2   2.3e-05      0.11      77     142 ..     127     183 ..      64     190 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
                 HHHHHHCTXXXXXXSSXHHHHHHHHHHTXHHHHHHHTTXXTTSTHHHHHHHHHTTSSXSXHHHHHH CS
   GatB_Yqey  77 eeiieekgLkqisdeeeleklveeviaenpkavedyksgkekalkflvGqvMkktkGkadpklvne 142
                 +e i   g + + + +el+ l +++i++        k+    a k++vG vMk++ G  ++k v +
  CCE28126.1 127 DEYIAGSGVQTLGE-AELKTLAQDAIEAS-------KAAG-TATKAIVGDVMKRLAGALEGKDVDR 183
                 55555555555554.66666666666665.......4433.699****************999975 PP

>> TetR_C_16  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.29   1.3e+03      19      19 ..      85      85 ..      51     116 .. 0.55
   2 ?   12.6   0.1   2.8e-05      0.13      21      69 ..     141     189 ..     129     194 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.29
                T CS
   TetR_C_16 19 a 19
                +
  CCE28126.1 85 T 85
                2 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHH--------HHHHHHHHHHHHHHCTTTS-STTHHHHHHHHH CS
   TetR_C_16  21 epllallrsalsseeaaellrefleeqvlaplaarlggpdaelRaalva 69 
                 + l +l   a+  ++aa ++ +++   v+++la +l+g+d +++a  ++
  CCE28126.1 141 AELKTLAQDAIEASKAAGTATKAIVGDVMKRLAGALEGKDVDRKALAAM 189
                 678899999*********************************9997665 PP

>> Phage_r1t_holin  Putative lactococcus lactis phage r1t holin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00011      0.51      49      71 ..      63      85 ..      52      86 .. 0.91
   2 ?    1.3   0.5      0.09     4e+02      35      62 ..     152     179 ..     133     189 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
  Phage_r1t_holin 49 vSvltSivsaavgdpksaslapa 71
                     +Svl +i+sa+++++k+as +++
       CCE28126.1 63 LSVLRAILSANLNASKTASPIQT 85
                     8******************9876 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.09
  Phage_r1t_holin  35 dwaaaasvaalaAvvSvltSivsaavgd 62 
                      ++ +aa+ a  a v  v++ +++a  g+
       CCE28126.1 152 EASKAAGTATKAIVGDVMKRLAGALEGK 179
                      4555555555555555666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1567.54
//
Query:       CCE28127.1  [L=322]
Description: uncharacterized protein CPUR_01601 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-31  108.2  27.4    6.8e-31  108.0  27.4    1.0  1  Sulf_transp  Sulphur transport


Domain annotation for each model (and alignments):
>> Sulf_transp  Sulphur transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0  27.4   3.8e-35   6.8e-31       7     308 ..       9     315 ..       3     317 .. 0.80

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 3.8e-35
  Sulf_transp   7 agairdivvekdgrllralllaiavaavgfqllaaaglidlpk...safpv....vglivGGllFGvGMalaGgCasgtlyrvGeGslralitllffi 97 
                  ++a+ +++  +d+ + +a+l a a++a+++++ +  g++++p+   s++ +     g+++GG l G+GMal+G+C++  ++++++G  + l++l + i
   CCE28127.1   9 PAAVLSQLKLEDWHMGQAFLAATAASAAIYFVAKRRGYVKIPPrmsSPLGLfskyDGNVLGGALLGMGMALGGSCPGALYAQLAAGVQSGLYALNGAI 106
                  6788889999*******************************77343455442222578**************************************** PP

  Sulf_transp  98 lgavalltgilsswleqllestvskes...lyetlglspllliall..lliallllvkelrkeklqeaeklektslakklfrkpwslvlgavllglla 190
                  +g++++ tgi+s+ ++ l+e++ +  +   ++e+lgls   +++ll  ++++++++  +l++++  ++          +   ++ + ++g++l+g  +
   CCE28127.1 107 VGGILW-TGIVSKGVQRLREKNAVRPErgvVNEQLGLSKGTAVLLLetACVGAIAATMTLHTPASGSDY---------SASASRIPGAVGGLLIGGAQ 194
                  **9985.78**********9998665556689******9999988876777777777788887766555.........5678999**********999 PP

  Sulf_transp 191 vlawllsaktgrsfglgftvpgakilqyl...vl...gtskflnwg.vvlvlGiilGaflaallsgefkleapkarellaallGGllMGfGarlAgGC 281
                  ++ +l+ ++      +g++++ +++ +++   v     t+k+++ g +++  G+ +Ga+   +l   ++       + ++a++GG+lM +G+r+AgGC
   CCE28127.1 195 LVSILTRRS-----MVGISGSYEEMGSLFwrlVGgsdTTAKPASYGnILFASGVAAGAWGFFKLLPGLASAPTHLVSPRLAMTGGVLMAVGSRMAGGC 287
                  998887644.....34444444444333211133111234445554489999*******9999999999865569*********************** PP

  Sulf_transp 282 niGaglsgiaslslsgwlalvflll.Ga 308
                  ++G+g+sgi+ ls+s+++++v++++ Ga
   CCE28127.1 288 TSGHGISGISLLSVSSVVTIVTAFVvGA 315
                  ******************9999887465 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2682.62
//
Query:       CCE28128.1  [L=364]
Description: related to alcohol dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-21   74.2   1.2    3.3e-20   72.4   0.9    1.9  2  ADH_zinc_N    Zinc-binding dehydrogenase
    2.8e-10   41.4   0.1    1.5e-09   39.0   0.1    2.0  2  ADH_zinc_N_2  Zinc-binding dehydrogenase
     0.0084   16.0   0.0      0.018   14.9   0.0    1.7  1  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.012   14.9   0.4      0.019   14.2   0.4    1.3  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain
      0.032   13.7   0.9      0.073   12.5   0.5    1.8  2  adh_short     short chain dehydrogenase
      0.035   13.5   0.1       0.13   11.6   0.1    1.9  2  PALP          Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.44   1.3e+03      79      96 ..      67      87 ..      65     102 .. 0.67
   2 !   72.4   0.9   1.1e-23   3.3e-20       1     128 [.     186     313 ..     186     315 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.44
                EEEE.EEEEECSC..TSSEEE CS
  ADH_zinc_N 79 lkpg.GrlvvvGg..gkgeee 96
                l+ g G++v vG+  ++++++
  CCE28128.1 67 LADGyGTVVQVGAavSEHNKT 87
                455559******985444443 PP

  == domain 2  score: 72.4 bits;  conditional E-value: 1.1e-23
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHT..TTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikelt..ggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeef 97 
                 gv l ++q+A a+G++v++++++e k+e+ak +Ga + + y+++ +++++k+l   +   +d+v++ +G g  +  a k+lk gG ++ +G+ +g++ +
  CCE28128.1 186 GVALQVLQFAVAMGCHVYVTSGDEAKIEKAKAMGARAGVVYSRDGWEKELKKLLpqERPFIDAVIDGAG-GNIVAKACKVLKQGGVIAQYGMTTGPK-M 282
                 788899****************************99888886658*********5434478********.*********************988877.9 PP

                 EHHHHH.HTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  98 dlrnll.lkeksilGsllgslreefkealdll 128
                 d+++++ l ++ ++Gs++gs ++ef+++++++
  CCE28128.1 283 DWSMQAvLMNVELRGSTMGS-KKEFRDMVAFV 313
                 **99777*************.*******9997 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.8   2.4e+03      43      56 ..      67      81 ..      61     113 .. 0.71
   2 !   39.0   0.1   4.9e-13   1.5e-09      23     133 .]     246     353 ..     218     353 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.8
                  E.EEEEEEEE----. CS
  ADH_zinc_N_2 43 l.pggGrlvsiggpp 56
                  l +g+G++v++g+ +
    CCE28128.1 67 LaDGYGTVVQVGAAV 81
                  55789*****99633 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 4.9e-13
                   EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH----EEEEEE....GGGH CS
  ADH_zinc_N_2  23 vDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGklrpvvdrvfp....leea 115
                   +D+v+d +gg+   ++++kvl++gG + ++g++  +   ++++ ++  ++v +   + m +  +++ +++++a+++ +k+rpvv+++ +    l+ +
    CCE28128.1 246 IDAVIDGAGGNIV-AKACKVLKQGGVIAQYGMT--TGPKMDWSMQAVLMNVELRGST-MGS--KKE-FRDMVAFVDRHKIRPVVSKTVKglgnLDGI 335
                   8********9988.88889**887889999863..4555555555555655555555.333..466.********************766777888* PP

                   HHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2 116 aeAhrylesgrarGKiVl 133
                    e +r++ +g+ +GK+V+
    CCE28128.1 336 EELFRDMDAGAQFGKLVV 353
                   *****************8 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.1e-06     0.018       1      53 [.      33      88 ..      33     142 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.1e-06
                TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS....- CS
       ADH_N  1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk....l 53
                p+++l+++ aa++++ Dl i ++   +  +++  l  +  G+v++vg +v++    l
  CCE28128.1 33 PNQLLVRMDAAALNHKDLFIRRH-LYPAISFENPLLADGYGTVVQVGAAVSEhnktL 88
                5799*****************99.7999999999***************99844444 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   6.5e-06     0.019      31      98 ..     180     248 ..     151     285 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.5e-06
                  EEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEE...HCHHHHHHHHHHHH-SEEEE- CS
  AlaDh_PNT_C  31 vlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvev...lksqeellaeavkeadvvigt 98 
                  v+ iGgGva lq ++ a+++g +V+v+  ++a++e+ +++ga+   v   +   e++l++ + +    i +
   CCE28128.1 180 VTGIGGGVA-LQVLQFAVAMGCHVYVTSGDEAKIEKAKAMGAR-AGVvysRDGWEKELKKLLPQERPFIDA 248
                  444788876.9****************************9999.555122333356666666665555554 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   2.4e-05     0.073       2      43 ..     177     218 ..     176     273 .. 0.81
   2 ?   -2.2   0.0       0.8   2.4e+03      60      80 ..     314     334 ..     287     335 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.4e-05
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevake 43 
                  +lvtG ++G+ +++ +  +++G++v+v++  e+k+e++++ 
  CCE28128.1 177 NILVTGIGGGVALQVLQFAVAMGCHVYVTSGDEAKIEKAKAM 218
                 69******************************9999887654 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.8
                 SHHHHHHHHHHHHHHHSSESE CS
   adh_short  60 dreevealvekavkklgkldv 80 
                 dr++++ +v+k vk lg+ld 
  CCE28128.1 314 DRHKIRPVVSKTVKGLGNLDG 334
                 788889999999999999996 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.34     1e+03     120     147 ..      49      75 ..      37      77 .. 0.75
   2 ?   11.6   0.1   4.4e-05      0.13      49     112 ..     171     232 ..     127     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.34
                 HHHHHSTTCEE--TTTSHHHHHHHHTHH CS
        PALP 120 elaaegegaylvsqfdnptviegygtig 147
                 +l  + ++ y + +f+np+  +gygt++
  CCE28128.1  49 DLFIR-RHLYPAISFENPLLADGYGTVV 75 
                 45555.7788888999**********97 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 4.4e-05
                 HHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EEEEE..CCHHH CS
        PALP  49 lkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaevvev..ggdyd 112
                  +e+ g+  +v++ +G  ++ +   a ++G  ++++v +++  +k+++ +++Ga+  +v   ++++
  CCE28128.1 171 NAEA-GRNILVTGIGGGVALQVLQFAVAMG--CHVYVTSGDE-AKIEKAKAMGARAGVVysRDGWE 232
                 4555.899999999****************..*********9.**********9765552244344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 3048.04
//
Query:       CCE28129.1  [L=320]
Description: probable KRR1 protein, required for 40S ribosome biogenesis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-30  104.5   0.0    4.5e-30  103.6   0.0    1.5  1  KH_8          Krr1 KH1 domain
  ------ inclusion threshold ------
      0.069   13.0   0.0       0.19   11.6   0.0    1.8  1  KH_1          KH domain
       0.07   13.2   2.0       0.41   10.8   0.5    2.5  2  Acyltransf_C  Acyltransferase C-terminus
      0.088   12.6   0.0       0.23   11.3   0.0    1.7  1  Pfg27         Pfg27


Domain annotation for each model (and alignments):
>> KH_8  Krr1 KH1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.0     1e-33   4.5e-30       1      81 []      38     118 ..      38     118 .. 0.99

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 1e-33
        KH_8   1 SsfevlfpkyrekylkeveekikklleekklklevdlkerslkvsTtekTrDPyiilkardlikLisrgvpleeakkvleD 81 
                 Ssf++lfpkyre ylke ++ ++k le++ + +++dl e+s++v+Tt+kT+DP  il+ardlikL++r+vp  +a+k+leD
  CCE28129.1  38 SSFVTLFPKYREVYLKEAWPLVTKSLEKYGIACTLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAVKILED 118
                 89******************************************************************************9 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.1e-05      0.19      11      36 ..     141     166 ..     133     187 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.1e-05
                 HHHHHTGGGHHHHHHHHHHT-EEEEE CS
        KH_1  11 vgriIGkgGsnIkeIreetgakIkvp 36 
                   ri+G++Gs++k ++  t ++I v 
  CCE28129.1 141 RQRILGPNGSTLKALELLTETYILVH 166
                 579*************9999999876 PP

>> Acyltransf_C  Acyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   9.2e-05      0.41      23      55 ..      10      45 ..       5      62 .. 0.77
   2 ?    0.7   0.0      0.13   5.8e+02      27      45 ..     187     205 ..     179     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.2e-05
  Acyltransf_C 23 PedeeelaeWlhelfeeKDklleeFyktgtFe...p 55
                  P d +++ +W  + f++KD++   F ++ +F    p
    CCE28129.1 10 PWDTDDIDKWKVDTFTAKDNAGGTFTEESSFVtlfP 45
                  78999***********************99966553 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.13
  Acyltransf_C  27 eelaeWlhelfeeKDklle 45 
                   e++ + +h +++ K+ +++
    CCE28129.1 187 EDCMNNVHPIYHIKELMIK 205
                   689999*********9987 PP

>> Pfg27  Pfg27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.1e-05      0.23     115     170 ..      76     131 ..      60     133 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.1e-05
                 HHHHHHHH-SSHHHHHHHHT-HHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHH CS
       Pfg27 115 evsiyvdhakevkekkrlvndkdlikllyesqiykkdvkitddkikdaiarisqll 170
                 e s+ v+++++  +   ++n +dlikll  s    + vki +d +   + +i +l+
  CCE28129.1  76 EGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAVKILEDGVACDVIKIRNLV 131
                 55789***********************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1393  (0.0776954); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 2646.63
//
Query:       CCE28130.1  [L=155]
Description: probable ribosomal protein L11, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-27   94.1   0.3    2.2e-26   92.2   0.0    1.9  2  Ribosomal_L11    Ribosomal protein L11, RNA binding domain
    4.6e-26   90.4   0.1    7.4e-26   89.8   0.1    1.3  1  Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L11  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.17   1.6e+03      47      62 ..       4      19 ..       1      22 [. 0.77
   2 !   92.2   0.0   2.4e-30   2.2e-26       1      70 []      76     153 ..      76     153 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.17
                   TXS.SHHHHHHHHHHH CS
  Ribosomal_L11 47 naalsleaavksilgt 62
                   +++  l+++vk i+g 
     CCE28130.1  4 SKGAALDSVVKLIVGA 19
                   4566899******995 PP

  == domain 2  score: 92.2 bits;  conditional E-value: 2.4e-30
                    ---SHHHHHHHHHTXSS.......XXSSTTTSXXEEEEHHHHHHHHHHHGGGHT.XS.SHHHHHHHHHHHHCTTTEEE CS
  Ribosomal_L11   1 ktPptsylLkkaagiek.......gsgkpgketvGtvslkqvyeIAkiKksdln.aalsleaavksilgtArsmGikV 70 
                    +tPpts+l+++++ ++k       g+++pg+etvG++slk+vyeIAkiK+s+ + ++lsle++++si+ +Ars+Gi+V
     CCE28130.1  76 RTPPTSWLMINCIDAPKnkkgkarGANRPGHETVGKISLKHVYEIAKIKQSEVRlSGLSLEGLCRSIIYQARSIGIEV 153
                    79*************96666666699**************************************************99 PP

>> Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.1   8.3e-30   7.4e-26       6      65 .]      11      71 ..       4      71 .. 0.97

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 8.3e-30
  Ribosomal_L11_N  6 kvvklrvpaGkAtpaPplGpaLGplGlnikkfckefnkaTkd.kkglripVkitvyqdrsf 65
                     +vvkl+v aGkA+p+Pp+GpaLG++G++ ++fckefn++T++  +++++p+++t+ +drsf
       CCE28130.1 11 SVVKLIVGAGKASPSPPVGPALGSKGIKSMDFCKEFNARTAHiTPDTPMPCRVTIRPDRSF 71
                     79**********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1338.04
//
Query:       CCE28131.1  [L=98]
Description: uncharacterized protein CPUR_01605 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 757.37
//
Query:       CCE28132.1  [L=110]
Description: uncharacterized protein CPUR_01606 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 865.48
//
Query:       CCE28133.1  [L=473]
Description: uncharacterized protein CPUR_01607 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.72   10.4   3.9        0.4   11.2   0.5    2.3  2  Di19_C    Stress-induced protein Di19, C-terminal


Domain annotation for each model (and alignments):
>> Di19_C  Stress-induced protein Di19, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.15   2.7e+03      52      86 ..     299     315 ..     270     341 .. 0.59
   2 ?   11.2   0.5   2.3e-05       0.4      27      91 ..     386     453 ..     369     454 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.15
      Di19_C  52 kpessveessvkksseekvlersvdsslseeeree 86 
                  ++s+++                   s+ ++eree
  CCE28133.1 299 AMKSHED------------------ASADRQEREE 315
                 2222222..................3333333332 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 2.3e-05
      Di19_C  27 snaapDpLLSsfiln.lptsdeeessk..pessveessvkksseekvlersvdsslseeereekarrs 91 
                 +++ +DpLL  +i++  p++de       p+  + e+ +++++ e++ +++  ++   e++ ekarrs
  CCE28133.1 386 EDSPADPLLVALIVSkDPAADEILGDPpdPHDRKPEDHEEERTVETPDKKERSEDPVPEDHAEKARRS 453
                 56789********986788888766552355555556666677777777777788899********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.19s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3725.89
//
Query:       CCE28134.1  [L=185]
Description: uncharacterized protein CPUR_01608 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1422.30
//
Query:       CCE28135.1  [L=760]
Description: related to protein kinase NPR1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-46  158.4   0.0    6.5e-46  156.8   0.0    1.7  1  Pkinase        Protein kinase domain
    6.4e-21   74.8   0.0    1.1e-20   74.1   0.0    1.3  1  Pkinase_Tyr    Protein tyrosine kinase
     0.0053   16.7   0.0      0.013   15.5   0.0    1.6  1  APH            Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.054   12.4   0.0      0.085   11.8   0.0    1.2  1  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.8   0.0   1.5e-49   6.5e-46       4     264 .]     380     724 ..     378     724 .. 0.91

  Alignments for each domain:
  == domain 1  score: 156.8 bits;  conditional E-value: 1.5e-49
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke...kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                  + lG G+ G+V  +++ke++  +AvK+++ ++  ++++   kkv++E  +  +l+h ni++ +++++ek + + v+ey++ + l+ ++   g++s ee
  CCE28135.1 380 GRVLGAGAGGSVRLMRRKEDNTVFAVKEFRARHSYETEReynKKVTAEFCVGSTLHHGNIIETLDILQEKGRWFEVMEYAPFD-LFAIVM-TGKMSREE 476
                 578***************************999988887889***************************************88.777775.599***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHH CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvlkeney.skkvDvWslGvilyellt 192
                 ++  + qil+g+ ylHs g+ HrDlK +N+ +++kg +Ki+DFG a  ++   +     ++ +vg+  YlAPEv +++ey  ++vD+Wsl++i+ +++ 
  CCE28135.1 477 IRCCFLQILNGVTYLHSVGLAHRDLKLDNVVVSDKGIMKIIDFGSAHVFKYPFEndtvaAKGIVGSDPYLAPEVYDSKEYdAAAVDIWSLAIIFCCMTL 575
                 *************************************************9988888999999******************8899*************** PP

                 SS-STTTSSHHHHHHHHHHT....HHHHHHHCTSHH...HHHTTS...................................................... CS
     Pkinase 193 gkppfsgekgkekvekeldq....lekilkilgetkeklpeasei...................................................... 233
                 ++ p++  + +++ +k +       +   k++g++k +++  +++                                                      
  CCE28135.1 576 RRFPWKIPRMSDNSYKLFASdptpGHDPSKLIGHSKSTSHLSTTVareflpeddakpkspskashyhtpnekqvpseatsptdsqtptqqstqaaqgag 674
                 *****95544443333332225556777777776666666666668888************************************************** PP

                 ...................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 ...................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                    ++e +++++++l+ +p +R  ++e+l++ ++
  CCE28135.1 675 gtserkeiirgpwrilrllPRESRHIIHRMLDLNPITRAKMDEILDETWV 724
                 **********************************************9996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.0   2.4e-24   1.1e-20       3     195 ..     379     570 ..     378     595 .. 0.84

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 2.4e-24
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH....HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee....keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkke 96 
                  lg+ lG+Ga G+V   + k    ++++  avK ++++++ e+    +++++ e  + ++l+h ni++ l +  ++++ + v+ey++   +   ++   
   CCE28135.1 379 LGRVLGAGAGGSVRLMRRK----EDNTVFAVKEFRARHSYETereyNKKVTAEFCVGSTLHHGNIIETLDILQEKGRWFEVMEYAPFDLFAIVMTG-- 470
                  6899*********999888....888999****9764433221224889999********************************999666666555.. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET.TT.SSEEEETTSSTSGGGGS-HHHHHHSEEEHHH.HHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi.ek.ddeyvkkeeaklpvkWmapEslkekkftsks.DvWsf 191
                    k++ +++ ++ lq+ +G+ yL+s  l Hrdl   Nv++s++ ++ki DfG a+   +  ++++v++++   +  ++apE+ ++k++  ++ D+Ws 
   CCE28135.1 471 --KMSREEIRCCFLQILNGVTYLHSVGLAHRDLKLDNVVVSDKGIMKIIDFGSAHVFkYPfENDTVAAKGIVGSDPYLAPEVYDSKEYDAAAvDIWSL 566
                  ..5999**********************************************999884331444566777778889***********987544***** PP

                  HHHH CS
  Pkinase_Tyr 192 Gvll 195
                  +++ 
   CCE28135.1 567 AIIF 570
                  9975 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.8e-06     0.013     163     197 ..     491     523 ..     455     525 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.8e-06
                 SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 163 elptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                   + +l H+Dl+++N++v   d  +  +iDf+ a+
  CCE28135.1 491 LHSVGLAHRDLKLDNVVVS--DKGIMKIIDFGSAH 523
                 5677899************..666668****9886 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.9e-05     0.085     228     254 ..     496     522 ..     475     535 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.9e-05
  Haspin_kinase 228 FEHRdLhldniLvdknlnvtlidlkls 254
                    + HRdL+ldn+ v +++ + +id+  +
     CCE28135.1 496 LAHRDLKLDNVVVSDKGIMKIIDFGSA 522
                    67*********************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 5742.67
//
Query:       CCE28136.1  [L=137]
Description: probable heat shock protein 10 (chaperonin CPN10) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-29  101.7   0.0    2.2e-29  101.3   0.0    1.1  1  Cpn10           Chaperonin 10 Kd subunit
  ------ inclusion threshold ------
       0.18   11.6   0.1       0.34   10.7   0.1    1.6  1  5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family


Domain annotation for each model (and alignments):
>> Cpn10  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0   2.5e-33   2.2e-29       2      93 .]      44     135 ..      43     135 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 2.5e-33
                 -EE-TTEEEEEESGG-TTS-TT----HHHHHSEEEEEEEEE-T........TS-TTS--T-EEEEEGGGTSS-GG---.EEEEEGGG--EE- CS
       Cpn10   2 ikplgdrVlvkraeeeekteggiilpdsakekpeqGvVvaVGegarnekgedvplevkvgdkVlfpkyagtkvkvdgkeylilkekdIlavi 93 
                 + pl drVlv+r ++e kt++gi+lp+s+ ek ++G+V aVG+ga +++g+++p++v vgd+Vl p+++g+ vk  +++y +++e++Ila+i
  CCE28136.1  44 LAPLLDRVLVQRIKAEAKTASGIYLPESSVEKLNEGKVLAVGPGALDKTGNRLPMGVAVGDRVLIPSFGGSPVKAGEEDYHLFRESEILAKI 135
                 67****************************************************************************************96 PP

>> 5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   3.8e-05      0.34      86     146 ..      50     107 ..       5     114 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.8e-05
                     EEECCCCCCCCCHCTSSCE--TTECCBCGGGG-SEEEE--SEEETTS-EE-SSTTHHHHHH CS
  5-FTHF_cyc-lig  86 lttlkeedslesgkyglkePeeeeerelalekldlvlvPgvAfdkeGaRlGkGkGyyDrfl 146
                      + +++ +  +++++g++ Pe++ e+   l++  ++ v+  A dk+G+Rl +G   +Dr+l
      CCE28136.1  50 RVLVQRIKAEAKTASGIYLPESSVEK---LNEGKVLAVGPGALDKTGNRLPMGVAVGDRVL 107
                     45556666667788899999999986...448899999999*********99988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 988.37
//
Query:       CCE28137.1  [L=203]
Description: probable SEC4-like Rab/GTPase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.5e-65  217.5   0.0    9.1e-65  217.2   0.0    1.1  1  Ras          Ras family
    4.1e-34  117.4   0.1    6.2e-34  116.8   0.1    1.2  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    3.3e-13   49.5   0.0    3.9e-13   49.2   0.0    1.1  1  Arf          ADP-ribosylation factor family
    7.4e-06   25.6   0.0    1.8e-05   24.4   0.0    1.5  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00021   20.7   0.0    0.00026   20.4   0.0    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
     0.0022   18.1   0.0     0.0058   16.7   0.0    1.6  2  MMR_HSR1     50S ribosome-binding GTPase
      0.006   16.5   0.2        2.7    7.9   0.0    2.2  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.096   13.0   0.1       0.94    9.7   0.0    2.1  2  AAA_22       AAA domain
      0.098   13.1   0.0          8    6.9   0.0    2.4  2  AAA          ATPase family associated with various cellular a
       0.11   12.0   0.0       0.54    9.8   0.0    2.0  1  FeoB_N       Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.2   0.0   5.1e-68   9.1e-65       1     161 [.      12     172 ..      12     173 .. 0.99

  Alignments for each domain:
  == domain 1  score: 217.2 bits;  conditional E-value: 5.1e-68
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Kl+l+Gds+vGK++ llrf +d+F+ ++++Tig+df++++ie+dgk+vkl+iwDTAGqe+f++++++yyr+a+gillvyd+t+++sf+n+++w++++++
  CCE28137.1  12 KLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRTWFQNVEQ 110
                 89************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 +a+e v+ +L+GnK+D e+kr+vste+g++la+elg++fle+SAk+n n+++af++l+ +i+
  CCE28137.1 111 HATEGVNKILIGNKCDWEDKRVVSTEQGQALADELGIPFLEVSAKSNINIDKAFYSLAADIK 172
                 *********************************************************99886 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.1   3.5e-37   6.2e-34       1     119 [.      12     126 ..      12     127 .. 0.92

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 3.5e-37
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K++l+GdsgvGK++ l rf ed+f+++  +tig+df+ +++ +++g       k+vkl+iWDtaGqerfr++++ y+r+a  ++lvyd   +rs++n++
  CCE28137.1  12 KLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTI-ELDG-------KRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDvtdERSFNNIR 102
                 89**********************************98876.4444.......6899******************************97767889**** PP

                 HHHHHHHHHCSSS.-EEEEEE-TT CS
         Roc  97 eWlkelkkvagks.pvilvgnkiD 119
                 +W+++++++a++  + il+gnk+D
  CCE28137.1 103 TWFQNVEQHATEGvNKILIGNKCD 126
                 *********9986478*******9 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   2.2e-16   3.9e-13      15     131 ..      11     131 ..       3     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 2.2e-16
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                 +++ll+G  + GK+  l ++++++++   + Tig  f+++++e   k +k+++wD  Gqe+ R +   Y++   +++ v D++d++ +++ ++ ++++ 
  CCE28137.1  11 IKLLLIGDSGVGKSCCLLRFSEDSFTPsFITTIGidFKIRTIELdgKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRTWFQNV- 108
                 799********************9987456666533788888876699***********************************************997. PP

                 TSGCCTTSEEEEEEE-TTSTTSS CS
         Arf 109 eeeelkevallvlaNKqDlpeal 131
                 e++  + v  ++++NK D ++  
  CCE28137.1 109 EQHATEGVNKILIGNKCDWEDKR 131
                 6667899999999*****98753 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   9.8e-09   1.8e-05      53     182 ..      44     161 ..      41     173 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 9.8e-09
                 TSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHH....HHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHH CS
    GTP_EFTU  53 giTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqtee....vlrlalkegvpiivfiNKmDrlkaelkeiveevk 147
                 gi  k+ +i+l+  +k+ ++++ Dt G + F   +++ +r + g +lv d+++    +  +    ++++  +egv+ i++ NK+D  ++++  + +   
  CCE28137.1  44 GIDFKIRTIELD--GKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRtwfqNVEQHATEGVNKILIGNKCDWEDKRVVSTEQG-- 138
                 555667777777..**************************************996655554011145677889999*********987776544332.. PP

                 HHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHH CS
    GTP_EFTU 148 qklsrkeeklekygekgekevpvvfgSalkgegvk 182
                 q l           +++   +p++ +Sa+++ +++
  CCE28137.1 139 QAL-----------ADE-LGIPFLEVSAKSNINID 161
                 223...........122.24666666666666665 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.4e-07   0.00026       1     111 [.      12     114 ..      12     145 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.4e-07
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsi.iFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k+LL+G sg GK++       d +++  ++++g+  +++  e+   + ++l++wD  Gqe+f + +        +r    ++ V Dv+++   ++++++
  CCE28137.1  12 KLLLIGDSGVGKSCCLLRfSEDSFTPSFITTIGIDFKIRTIEL-DGKRVKLQIWDTAGQERFRTIT-----TAYYRGAMGILLVYDVTDE---RSFNNI 101
                 89***********865440345667777777777777776666.36689************98876.....3445555566778888844...444444 PP

   Gtr1_RagA  99 keilealrqyspe 111
                 ++ ++++ q+  e
  CCE28137.1 102 RTWFQNVEQHATE 114
                 4455555554444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.2e-06    0.0058       2      99 ..      13     107 ..      12     124 .. 0.65
   2 ?   -1.5   0.0       1.5   2.7e+03      50      86 ..     141     179 ..     123     195 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.2e-06
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldeel 97 
                  +++G + vGKS  + + +++    s +    +d + ++++l+g   +++++Dt+G  e   + + ++ a+ +   a  illv d++ e+++++++  +
  CCE28137.1  13 LLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGkrVKLQIWDTAG-QE---RFRTITTAYYR--GAMGILLVYDVTdERSFNNIRTWF 105
                 579****************987766666666666677777766534679*******.44...23355555553..489999999988422444443333 PP

                 HH CS
    MMR_HSR1  98 ee 99 
                 ++
  CCE28137.1 106 QN 107
                 33 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
                 EEECGGCS..S.HHHHHHHHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  50 lvDtpGli..e.gaseekglgkaflaleeadlillvvdas 86 
                 l+D  G+   e +a+++ ++ kaf +   ad+   ++d+s
  CCE28137.1 141 LADELGIPflEvSAKSNINIDKAFYS-LAADIKKRLIDSS 179
                 55666632223345555566666665.3346666666644 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0015       2.7     103     116 ..      14      27 ..      11      44 .. 0.86
   2 !    6.7   0.0    0.0034         6      43      96 ..     112     166 ..      84     176 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0015
                  EEECSTTSSHHHHH CS
  RsgA_GTPase 103 vlvGqSGvGKStLi 116
                  +l+G SGvGKS  +
   CCE28137.1  14 LLIGDSGVGKSCCL 27 
                  69*********755 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0034
                  HHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHH CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkegleelkel 96 
                   ++g++ +++ nK+D  +++  ++e+ ++   +lg+++l vsak++ ++++    
   CCE28137.1 112 ATEGVNKILIGNKCDWEDKRVvSTEQGQALADELGIPFLEVSAKSNINIDKAFYS 166
                  56789999999*****9999878888899999************99988875544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00053      0.94       8      27 ..      13      32 ..      12      37 .. 0.89
   2 ?    0.4   0.0      0.39   7.1e+02     106     130 ..      95     123 ..      84     132 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00053
      AAA_22  8 lvvtGesGtGKTtllrrlle 27
                l+++G sG+GK+ +l r+ e
  CCE28137.1 13 LLLIGDSGVGKSCCLLRFSE 32
                689***********999865 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.39
      AAA_22 106 eealeeLrsllnl....srkgvqliLvGt 130
                 e+ ++++r+++ +    ++ gv  iL+G 
  CCE28137.1  95 ERSFNNIRTWFQNveqhATEGVNKILIGN 123
                 56788888888777888888888888886 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0045         8       1      63 [.      13      88 ..      13     121 .. 0.70
   2 ?    3.7   0.0     0.042        76      16      35 ..     139     158 ..     135     185 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0045
                EEEESSTTSSHHHHHHHHHHHH.............THEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTSTSEEEE CS
         AAA  1 vllyGppGtGKTllakavakel.............gvefleisgsell.skyvgesekkirelfkeakekakpsilf 63
                +ll+G  G+GK+ +     +++             +++ +e++g+++  + +  ++++++r + ++  + a   il+
  CCE28137.1 13 LLLIGDSGVGKSCCLLRFSEDSftpsfittigidfKIRTIELDGKRVKlQIWDTAGQERFRTITTAYYRGA-MGILL 88
                69***********9999999944444444444444688888888888855566677777777766665555.55555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.042
                 HHHHHHHTHEEEEEETTTCS CS
         AAA  16 kavakelgvefleisgsell 35 
                 +a+a elg++fle+s+++ +
  CCE28137.1 139 QALADELGIPFLEVSAKSNI 158
                 799************99877 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0003      0.54     100     151 ..     110     162 ..      11     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0003
                 HHHHTTSSEEEEEETHHHHHHTTEEE-H.HHHHHHHTS-EEEEBTTTTBTHHH CS
      FeoB_N 100 qllelgvpvvlalnmideaekkgieidl.kkLsekLgvpvvktsakkkegiee 151
                 q +  gv+ +l+ n++d  +k+ ++ ++ ++L+++Lg+p +++sak++ +i++
  CCE28137.1 110 QHATEGVNKILIGNKCDWEDKRVVSTEQgQALADELGIPFLEVSAKSNINIDK 162
                 5555678889999999999999998876378*****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1574.79
//
Query:       CCE28138.1  [L=383]
Description: uncharacterized protein CPUR_01612 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3184.49
//
Query:       CCE28139.1  [L=779]
Description: related to AAA family ATPase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.9e-53  178.1   0.0      5e-38  130.5   0.0    2.5  2  AAA           ATPase family associated with various cellular 
    4.3e-10   39.2  11.7    4.6e-09   36.0   1.7    3.5  3  AAA_lid_3     AAA+ lid domain
    1.6e-07   31.8   0.0     0.0019   18.6   0.0    3.2  3  AAA_16        AAA ATPase domain
    1.8e-06   28.0   0.0       0.15   12.0   0.0    3.5  2  AAA_5         AAA domain (dynein-related subfamily)
    8.6e-05   22.3   0.0     0.0011   18.8   0.0    2.9  4  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
    0.00014   22.1   0.0      0.094   13.0   0.0    2.9  3  AAA_22        AAA domain
      0.004   16.7   0.3        7.1    6.2   0.0    3.5  3  AAA_25        AAA domain
     0.0061   16.8   0.1       0.25   11.5   0.0    2.6  2  AAA_28        AAA domain
  ------ inclusion threshold ------
      0.033   14.2   0.0        3.3    7.8   0.0    2.8  2  Vps4_C        Vps4 C terminal oligomerisation domain
      0.035   14.0   0.0      0.079   12.9   0.0    1.6  1  Rad17         Rad17 P-loop domain
      0.044   14.2   0.0         12    6.3   0.0    2.7  2  RNA_helicase  RNA helicase
      0.044   13.7   0.4        2.3    8.1   0.2    3.0  4  NACHT         NACHT domain
      0.054   12.9   0.3        2.1    7.6   0.0    2.4  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
        0.2   11.1   0.0         16    4.9   0.0    2.3  2  AAA_7         P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   9.2e-15   1.2e-11       2     130 ..     263     386 ..     262     388 .. 0.90
   2 !  130.5   0.0   3.9e-41     5e-38       1     131 [.     533     676 ..     533     677 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 9.2e-15
                 EEESSTTSSHHHHHHHHHHH.HTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   2 llyGppGtGKTllakavake.lgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +l+G  GtGKTl+ + +a++ +g++f      +l+          +r++fk+a++++ p+ +++D +++l++++    + ++e v+++L +eld ++ +
  CCE28139.1 263 VLHGGHGTGKTLILQRIAESrWGRPFWIKPSDKLT---------TVRDTFKQARASQ-PCMVLLDGLEELISKE----RPNREAVMEALAEELDALSAE 347
                 69*****************9446666655555555.........9***********8.************9999....8999****************9 PP

                 ......SSTEEEEEEESS.GGGSTHHHHS.TTSSEEEET CS
         AAA 100 ......eskvivigatnr.pdkldpallr.gRfdrkiei 130
                         kv+v++++ + + +++ +l + +Rf + i +
  CCE28139.1 348 araagaLPKVVVLATCEDyMTDVPAKLQKrSRFRENIAL 386
                 ******889********999********88***999876 PP

  == domain 2  score: 130.5 bits;  conditional E-value: 3.9e-41
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH..............TTCCCHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr..............sgseseeeerv 85 
                 +llyGppG+ KTl a+a+a+e+g++f+ ++g+ell++yvgese+ +r lf++a++ + psi+f+DEid+++++r              s+s s+ + ++
  CCE28139.1 533 LLLYGPPGCSKTLSAQAMATESGFNFFAVKGAELLNMYVGESERAVRTLFERARAAS-PSIIFFDEIDSIGGQRgpgsgaspfsgagsSSSRSNGSVNM 630
                 69*****************************************************99.**************************998777788888899 PP

                 HHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  86 vnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 + +Llte+dg+++ ++ v+v++atnrp+ +dpal+r gRfd++++++
  CCE28139.1 631 LTTLLTEMDGFESLTG-VLVLAATNRPEAMDPALMRpGRFDQVLYVG 676
                 99***********876.*************************99986 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.9      0.65   8.3e+02      24      39 ..     330     345 ..     330     348 .. 0.84
   2 !    7.7   0.0    0.0023         3       4      27 ..     414     437 ..     413     453 .. 0.89
   3 !   36.0   1.7   3.6e-12   4.6e-09       1      34 [.     699     740 ..     699     752 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.65
   AAA_lid_3  24 reAallAlrrgikeit 39 
                 reA+++Al + +++++
  CCE28139.1 330 REAVMEALAEELDALS 345
                 8*******99998765 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0023
   AAA_lid_3   4 lkeLAerTeGySGADlaalcreAa 27 
                 l+ +A++T+ y G Dla l+ +A 
  CCE28139.1 414 LASVAQKTHAYNGDDLATLVLNAK 437
                 6789****************9997 PP

  == domain 3  score: 36.0 bits;  conditional E-value: 3.6e-12
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrr........g 34 
                 dvd++e A++ +GySGA++ a+c+eA+++ l+r        g
  CCE28139.1 699 DVDVAEAARLADGYSGAEINAICNEAGMAVLERfdddngegG 740
                 9******************************99444444433 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.5e-06    0.0019      23     129 ..     257     360 ..     229     402 .. 0.63
   2 !    8.1   0.0    0.0024       3.1      21      46 ..     527     552 ..     522     571 .. 0.80
   3 ?    0.2   0.0      0.65   8.4e+02     123     146 ..     578     600 ..     572     639 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.5e-06
      AAA_16  23 rp.elvllsGesGvGKsslvrellralekd........ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpela 112
                 r+ ++ +l+G  G+GK+ ++++++++  ++        +  ++r +++q +++ p  +l++ l + el+ ++  + ++a  ea +e+l++  a      
  CCE28139.1 257 REsCAFVLHGGHGTGKTLILQRIAESRWGRpfwikpsdKLTTVRDTFKQARASQPCMVLLDGL-E-ELISKERPN-REAVMEALAEELDALSA-E---- 347
                 3358999*****************844444588888865777999999999999998899999.5.677766655.33355555554444333.2.... PP

      AAA_16 113 gaeasrllellkrllal 129
                      r + +l + ++l
  CCE28139.1 348 ----ARAAGALPKVVVL 360
                 ....2222222222222 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0024
      AAA_16  21 sgrpelvllsGesGvGKsslvrellr 46 
                 ++ p  +ll+G++G+ K+  +++ ++
  CCE28139.1 527 RNPPKGLLLYGPPGCSKTLSAQAMAT 552
                 555689*************9999886 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.65
      AAA_16 123 lkrllallsrderplvlvlDdlqw 146
                 ++ l+++++  ++p ++++D+++ 
  CCE28139.1 578 VRTLFERARA-ASPSIIFFDEIDS 600
                 5666788888.8899999999984 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00015       0.2       2      45 ..     262     306 ..     261     322 .. 0.88
   2 !   12.0   0.0   0.00012      0.15       2      76 ..     533     600 ..     532     604 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrr 45 
                 ++L G  GtgK+ + +r+a+   +r+++++   + tt +d + + 
  CCE28139.1 262 FVLHGGHGTGKTLILQRIAESRwGRPFWIKPSDKLTTVRDTFKQA 306
                 6899****************999**********999998866655 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00012
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEver 76 
                 +lL GppG+ K+  a+ +a   + +++ v + +      l+  +    g+ ++    l + ar  +++i+++DE++ 
  CCE28139.1 533 LLLYGPPGCSKTLSAQAMATESGFNFFAVKGAE------LLNMYV---GESERAVRTLFERARaaSPSIIFFDEIDS 600
                 89******************99***99998876......444444...44444456666666666778888888875 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.3   8.1e+03      55      77 ..       4      26 ..       2      36 .. 0.78
   2 ?   -2.7   0.0       3.4   4.4e+03      37      55 ..     263     281 ..     256     283 .. 0.82
   3 !   18.8   0.0   8.5e-07    0.0011       6      67 ..     495     564 ..     488     602 .. 0.77
   4 ?   -1.5   0.0       1.4   1.8e+03      24      42 ..     660     678 ..     643     682 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.3
      RuvB_N 55 kelgvklkitsgPvlekagdlaa 77
                k +++k++  + P+leka+ l a
  CCE28139.1  4 KSIDAKVRPLANPALEKASLLGA 26
                56788999999999999987755 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.4
      RuvB_N  37 llyGpPGlGkttlakiiak 55 
                 +l+G  G Gkt + + ia+
  CCE28139.1 263 VLHGGHGTGKTLILQRIAE 281
                 7899*******98887775 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 8.5e-07
      RuvB_N   6 leeyigqekvkeklkifieaakkreealdhv........llyGpPGlGkttlakiiakelgvklkitsgP 67 
                 +++  gqe++k+ l+ +i+ +k+ + +  hv        llyGpPG  kt  a+ +a+e g ++ +  g 
  CCE28139.1 495 WQDVGGQENLKKVLNRMIKNTKNTNPSSRHVlrnppkglLLYGPPGCSKTLSAQAMATESGFNFFAVKGA 564
                 57889*******************99999984444444469******************99998776665 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.4
      RuvB_N  24 eaakkreealdhvllyGpP 42 
                 + a +r    d vl +GpP
  CCE28139.1 660 DPALMRPGRFDQVLYVGPP 678
                 4455666667777777777 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   7.4e-05     0.094       8      91 ..     262     346 ..     256     360 .. 0.81
   2 ?    5.5   0.0     0.015        19       8      28 ..     533     553 ..     527     583 .. 0.87
   3 ?   -2.0   0.0       3.2   4.1e+03      77     103 ..     576     601 ..     561     610 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.4e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrellralglelkaerlsseellealeqalrarav 91 
                  v++G  GtGKT+ l+r++e+   +++  ++++++ +v  + +    ++ +  ll  l++  ++er ++e+++eal++ l+a ++
  CCE28139.1 262 FVLHGGHGTGKTLILQRIAESRWGRPFWIKPSDKLTTVRDTFKQaRASQPCMVLLDGLEELISKERPNREAVMEALAEELDALSA 346
                 589******************9666666667777777777777745666699999999999999999999999999999998876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.015
      AAA_22   8 lvvtGesGtGKTtllrrlleq 28 
                 l+++G++G+ KT++++ ++ +
  CCE28139.1 533 LLLYGPPGCSKTLSAQAMATE 553
                 799*************98865 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.2
      AAA_22  77 ellealeqalraravielliiDEaqhl 103
                 + +++l + +ra++  +++  DE++ +
  CCE28139.1 576 RAVRTLFERARAASP-SIIFFDEIDSI 601
                 444444444455555.89999**9987 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.094   1.2e+02      36      64 ..     262     289 ..     248     299 .. 0.80
   2 !    6.2   0.0    0.0055       7.1     132     185 ..     301     354 ..     286     356 .. 0.78
   3 ?    4.5   0.0     0.018        23      37      55 ..     534     552 ..     512     590 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.094
      AAA_25  36 allaGapgtGKttlaldlalavatGkpwl 64 
                  +l G +gtGKt ++  +a +   G+p++
  CCE28139.1 262 FVLHGGHGTGKTLILQRIAESRW-GRPFW 289
                 5799*********9998887776.67776 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0055
      AAA_25 132 aleaaieevegvrlvviDplsralggdensnsdv.galvealeriarrtgaavll 185
                 +  +++++  ++ +v +D l ++ + +  + ++v +al e l+ ++++ +aa  l
  CCE28139.1 301 DTFKQARA-SQPCMVLLDGLEELISKERPNREAVmEALAEELDALSAEARAAGAL 354
                 44566777.6799************9555555555*************9999766 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.018
      AAA_25  37 llaGapgtGKttlaldlal 55 
                 ll+G+pg+ Kt  a  +a 
  CCE28139.1 534 LLYGPPGCSKTLSAQAMAT 552
                 8***********9998885 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0    0.0002      0.25       2      25 ..     262     287 ..     261     332 .. 0.83
   2 ?    2.3   0.0      0.14   1.8e+02       4      33 ..     535     565 ..     533     595 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
      AAA_28   2 ivitGgestGKTtlleaLaar..gyp 25 
                 +v+ Gg++tGKT +l+++a+   g p
  CCE28139.1 262 FVLHGGHGTGKTLILQRIAESrwGRP 287
                 79*****************7646766 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.14
      AAA_28   4 itGgestGKTtlleaLaar.gypvvpEaare 33 
                 + G++++ KT  ++a+a + g++ ++  + e
  CCE28139.1 535 LYGPPGCSKTLSAQAMATEsGFNFFAVKGAE 565
                 78***************76677755433333 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.074        95      30      44 ..     467     481 ..     454     486 .. 0.89
   2 ?    7.8   0.0    0.0026       3.3      27      60 ..     743     776 ..     734     776 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.074
      Vps4_C  30 tlkDflkalkkarpt 44 
                 + +D+l+al+ +rpt
  CCE28139.1 467 SKEDMLQALRITRPT 481
                 789***********9 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0026
      Vps4_C  27 PpvtlkDflkalkkarptVskeDLekheeFTkef 60 
                  ++ + D+++a++k+ + +++  ++ +e + ++f
  CCE28139.1 743 LEIAMADLVAAMEKTPRNITPGMIHGYEAWSRQF 776
                 5899***************************998 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.2e-05     0.079      40      73 ..     526     558 ..     506     599 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.2e-05
       Rad17  40 LesrkkriLLisGPsGCgkstvvkvLskelgikl 73 
                 L +   + LL+ GP+GC+k+   + ++ e g+++
  CCE28139.1 526 LRNP-PKGLLLYGPPGCSKTLSAQAMATESGFNF 558
                 4444.4457889***************9998775 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.025        32       2      21 ..     263     282 ..     262     337 .. 0.72
   2 ?    6.3   0.0    0.0093        12       2      21 ..     534     553 ..     533     577 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.025
  RNA_helicase   2 wlyGpsgeGKStlakeLaka 21 
                   +l+G +g+GK+++ +++a++
    CCE28139.1 263 VLHGGHGTGKTLILQRIAES 282
                   79*************98865 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0093
  RNA_helicase   2 wlyGpsgeGKStlakeLaka 21 
                   +lyGp+g+ K++ a+ +a++
    CCE28139.1 534 LLYGPPGCSKTLSAQAMATE 553
                   79**************8876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2    0.0018       2.3       4      23 ..     263     282 ..     261     288 .. 0.88
   2 ?    1.5   0.0      0.19   2.4e+02      80     109 ..     309     337 ..     289     379 .. 0.74
   3 ?   -1.8   0.0         2   2.6e+03       4      22 ..     534     552 ..     532     554 .. 0.86
   4 ?   -3.0   0.0       4.7     6e+03      78     114 ..     586     636 ..     564     662 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0018
                 EEEC-TTTCHHHHHHHHHHH CS
       NACHT   4 ilqGeaGsGKTtLlqklala 23 
                 +l+G  G GKT  lq++a+ 
  CCE28139.1 263 VLHGGHGTGKTLILQRIAES 282
                 79***************974 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.19
                 CCCEEEEEE-STT-SS-TCH.........H CS
       NACHT  80 perlLlilDglDelvtdlgqkekqpvrtlL 109
                  +  + +lDgl+el ++ ++ ++++v + L
  CCE28139.1 309 SQPCMVLLDGLEELISKERP-NREAVMEAL 337
                 56677899******998887.444444444 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2
                 EEEC-TTTCHHHHHHHHHH CS
       NACHT   4 ilqGeaGsGKTtLlqklal 22 
                 +l G++G+ KT  +q +a+
  CCE28139.1 534 LLYGPPGCSKTLSAQAMAT 552
                 799********99998876 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 4.7
                 CSCCCEEEEEE-STT-SS-TCH.......................HHHHHC CS
       NACHT  78 elperlLlilDglDelvtdlgq..............kekqpvrtlLselir 114
                 + +    + +D +D +  + g+              ++ + + ++L++l++
  CCE28139.1 586 RAASPSIIFFDEIDSIGGQRGPgsgaspfsgagsssSRSNGSVNMLTTLLT 636
                 344444466777777777777666666666666655444444445555554 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.056        72      25      43 ..     262     280 ..     259     282 .. 0.89
   2 ?    7.6   0.0    0.0017       2.1      25      43 ..     533     551 ..     529     553 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.056
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   ++l G  G+GKt++ +r++
    CCE28139.1 262 FVLHGGHGTGKTLILQRIA 280
                   6899************986 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0017
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   lll+GppG+ Kt+ a++++
    CCE28139.1 533 LLLYGPPGCSKTLSAQAMA 551
                   89*************9986 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.013        16      35      54 ..     261     280 ..     255     286 .. 0.84
   2 ?    3.6   0.0     0.033        42      34      55 ..     531     552 ..     508     562 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.013
       AAA_7  35 pvllvGptGtGKtviikdll 54 
                  ++l G  GtGKt+i++++ 
  CCE28139.1 261 AFVLHGGHGTGKTLILQRIA 280
                 67899***********9865 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.033
       AAA_7  34 kpvllvGptGtGKtviikdllk 55 
                 k +ll+Gp G++Kt+ ++ + +
  CCE28139.1 531 KGLLLYGPPGCSKTLSAQAMAT 552
                 6789***********9998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.39
# Mc/sec: 5955.60
//
Query:       CCE28140.1  [L=966]
Description: related to pleiotropic drug resistance control protein PDR6 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-75  253.0   1.9    1.7e-75  253.0   1.9    1.8  2  SMK-1     Component of IIS longevity pathway SMK-1


Domain annotation for each model (and alignments):
>> SMK-1  Component of IIS longevity pathway SMK-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.0   1.9   9.7e-80   1.7e-75       2     187 ..     294     480 ..     293     484 .. 0.96
   2 ?   -2.3   0.1      0.18   3.2e+03      19      56 ..     667     706 ..     656     709 .. 0.61

  Alignments for each domain:
  == domain 1  score: 253.0 bits;  conditional E-value: 9.7e-80
       SMK-1   2 edYikkLlelfeeaedleslenLhalcsivktilllndeelleellsdelilgvvGilEydpefpehkanhRefLkqkakfkevipikdeelkkkihqt 100
                 +dYi kL+ l+e+aedlesl +Lh+lc+i+k+i+llnd++++e ++sd+++lgv+G+lEydp+fp+hkanhR++L+++ +fkev+pi+de+++ kihqt
  CCE28140.1 294 DDYIMKLVPLVEMAEDLESLPDLHRLCNIMKAIILLNDTAIIERAISDDCLLGVMGALEYDPDFPSHKANHRQWLENRGRFKEVVPIEDEHTLYKIHQT 392
                 69************************************************************************************************* PP

       SMK-1 101 yrlqylkDvvLarvlddstlsvLnsliffnqveIvsllqedeefLkelfkllkdeetekekrrelvlllkelcslaknlqlpa.reel 187
                 yrlqylkDvvLar+ldd+t+svLnsliffn+ve+vs++q++e++L+elf++++ +  +++k+++++l+++++ +lak +q+p+ ++ +
  CCE28140.1 393 YRLQYLKDVVLARILDDPTFSVLNSLIFFNHVEVVSHIQSNERLLSELFSIFNANCRDEKKKKDAILFIQQCSALAKIIQAPTmKTGI 480
                 *******************************************************************************976515555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.18
       SMK-1  19 eslenLhalcsi..vktilllndeelleellsdelilgvv 56 
                 +s e+  +l+ i  +++++ l+de  l+++l+  +++ v+
  CCE28140.1 667 KSREKFLQLVAIrfFRSLIALQDEFYLKQILERRVLVPVL 706
                 4444444444332268888888888888888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (966 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 6545.30
//
Query:       CCE28141.1  [L=460]
Description: uncharacterized protein CPUR_01615 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3379.67
//
Query:       CCE28142.1  [L=386]
Description: related to dolichyl-phosphate beta-glucosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-21   76.0   0.0    8.8e-21   74.4   0.0    1.8  1  Glycos_transf_2  Glycosyl transferase family 2
    1.4e-06   28.4   0.2    0.00037   20.5   0.0    2.4  3  Glyco_tranf_2_3  Glycosyltransferase like family 2
     0.0011   18.5   0.0     0.0022   17.5   0.0    1.4  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
  ------ inclusion threshold ------
       0.14   12.7   0.0       0.29   11.7   0.0    1.5  1  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0     2e-24   8.8e-21       1     106 [.      93     236 ..      93     295 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 2e-24
                      EEEEEESS-TTTHHHHHHHHHHH...................................GGCCEEEEEEEEES-SSCHHHHHGGGCH...C-TTE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaq...................................dpypdfeiivvDDgStDetveileelak...edprv 56 
                      svv p+yNeek +  tle +++                                         +ei++v+DgS D+tve++ ++a+     + +
       CCE28142.1  93 SVVFPAYNEEKRIIPTLEEAVDYldehvgrhtdtkastlphggrrhhrvsssfgsvpsRQTRGYEILIVNDGSCDKTVEVALDFARkrnLHDIL 186
                      8*********************************************************9*********************************** PP

                      EEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-TTHHHHHHHHHHH CS
  Glycos_transf_2  57 rvirreenvGkagalnaglraatgdyilflDaDdepdpdwleklvealek 106
                      rv+ + +n+Gk+g++ +glr+++g+y+lf DaD +    ++ kl+e  e+
       CCE28142.1 187 RVVSLVKNRGKGGSVTHGLRHVRGEYVLFADADGASRFSDVGKLIEGCEE 236
                      ******************************************99997766 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0031        14       3      27 ..      91     115 ..      88     126 .. 0.86
   2 !   20.5   0.0   8.2e-08   0.00037      32      97 ..     156     219 ..     137     223 .. 0.82
   3 ?   -3.9   0.0       2.3     1e+04     138     159 ..     252     273 ..     240     278 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0031
  Glyco_tranf_2_3   3 dlavlVptfneedvlgevlesllaq 27 
                      +l+v++p++nee+++  +le+++ +
       CCE28142.1  91 RLSVVFPAYNEEKRIIPTLEEAVDY 115
                      49******************99876 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 8.2e-08
  Glyco_tranf_2_3  32 vevvvvvdesdaetlevaeelaaalp..dvrvrvvvnarnlgstgksralnealravksdlvllvDdD 97 
                      +e+ +v d+s ++t+eva  +a++    d+ +rvv   +n g   k  ++ ++lr+v++++vl+ D+D
       CCE28142.1 156 YEILIVNDGSCDKTVEVALDFARKRNlhDI-LRVVSLVKNRG---KGGSVTHGLRHVRGEYVLFADAD 219
                      88999999999*****99999988776475.99998888755...555556****************9 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 2.3
  Glyco_tranf_2_3 138 alefaerhlrflaarralgvlt 159
                       l+ a r++ ++++++ l++lt
       CCE28142.1 252 HLRSALRNFLMRSFHLVLTILT 273
                      4577888888888888888655 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.8e-07    0.0022      30      92 ..     156     220 ..     147     233 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.8e-07
  Glyco_tranf_2_2  30 ielivvddgSsekfleevssiidl.nllvylkdeddk.ayslaaarNrGaskaesdlvlFlDaDc 92 
                       e+++v+dgS +k++e+   +  + nl++ l+        +++ +   G  +  +++vlF DaD 
       CCE28142.1 156 YEILIVNDGSCDKTVEVALDFARKrNLHDILRVVSLVkNRGKGGSVTHGLRHVRGEYVLFADADG 220
                      699*************998887651667777766544499***********************95 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.5e-05      0.29      21      81 ..     157     219 ..     150     226 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.5e-05
  Glyco_tranf_2_4  21 rilvydndstDgtrailkelpe...vk.llhvdksyederrqvellkallaryaeadwvlvvDaD 81 
                      +il+++++s+D+t ++    ++   +  +l+v++ ++++  + ++ + l   + ++++vl++DaD
       CCE28142.1 157 EILIVNDGSCDKTVEVALDFARkrnLHdILRVVSLVKNRGKGGSVTHGLR--HVRGEYVLFADAD 219
                      59*************99664431123358889998886666666666665..569*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2716.16
//
Query:       CCE28143.1  [L=501]
Description: related to squalene monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-85  286.9   0.0    1.6e-85  286.6   0.0    1.1  1  SE              Squalene epoxidase
    5.3e-10   39.1   1.2    2.3e-09   37.0   0.1    2.3  2  FAD_binding_3   FAD binding domain
    4.5e-08   33.1   0.1    2.3e-06   27.4   0.1    2.2  2  DAO             FAD dependent oxidoreductase
    0.00013   22.2   0.2    0.00027   21.1   0.2    1.5  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00017   20.9   0.1    0.00092   18.5   0.0    1.9  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00023   20.4   0.9     0.0016   17.6   0.2    1.9  2  GIDA            Glucose inhibited division protein A
    0.00035   19.8   0.1    0.00059   19.0   0.1    1.3  1  FAD_binding_2   FAD binding domain
     0.0005   19.5   0.4     0.0012   18.3   0.1    1.6  2  FAD_oxidored    FAD dependent oxidoreductase
     0.0016   18.1   0.1      0.022   14.4   0.1    2.2  2  ApbA            Ketopantoate reductase PanE/ApbA
     0.0036   17.8   0.7      0.012   16.1   0.1    2.1  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0075   15.5   0.0      0.013   14.7   0.0    1.3  1  Thi4            Thi4 family
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.025   14.6   0.0    1.5  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
      0.029   13.5   0.0      0.065   12.3   0.0    1.6  2  Lycopene_cycl   Lycopene cyclase protein
      0.034   14.0   0.1      0.068   13.1   0.1    1.5  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.082   11.6   0.1       0.14   10.9   0.1    1.3  1  HI0933_like     HI0933-like protein
       0.11   12.5   0.0       0.19   11.8   0.0    1.3  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.6   0.0   1.4e-88   1.6e-85       2     262 ..     194     458 ..     193     477 .. 0.94

  Alignments for each domain:
  == domain 1  score: 286.6 bits;  conditional E-value: 1.4e-88
          SE   2 AkltvvcDGifsklRkels.dnkvevtssfvGlvlknaelpkknkghvilgk.pspvllYqisstetRilveikskklPsi..angelkeylkeevaPq 96 
                  +lt+++DG  sk+R +++ ++k++v+s+f  l l ++elp+++ ghvi+g+ + p+llYqi+++etR l++++   +P++  a+g ++ y+k+   P+
  CCE28143.1 194 GHLTIIADGYSSKFREQVIsNKKPTVKSKFYALELIDTELPQEHFGHVIIGSkSYPTLLYQIGTHETRALFDVPIG-IPEAspAAGGVRGYIKNVAIPA 291
                 69***************9978899**************************99788******************998.8875225899************ PP

          SE  97 lPkelrksfkkaleegkl.rsmpnkflpasknekkGlillGDalnmRHPltggGmtvalnDivllskllkpl..edlsdeekvleelksfyvkRkelda 192
                 lP ++r++  ka+e+gk+ rsmpn++lp+sk+++kGl+llGDa+nmRHPltggGmtva+nD+++ls+l+ p+  + l+d++++ ++l  fy++Rk+l++
  CCE28143.1 292 LPASVRPAALKAMEDGKIpRSMPNSWLPPSKQNSKGLVLLGDAFNMRHPLTGGGMTVAFNDALMLSQLIDPShiPSLEDSKAINDALGVFYWRRKNLSS 390
                 ****************9889**************************************************98889************************ PP

          SE 193 vvnvLsialyslfaadsdelkalrkgCfdYlkrGgecvsgpvallsgllprPllLikhffavalysvyll 262
                 ++nvL++aly+lfaa++++l+al++gCf+Y++rG  +++gp +ll+g+  +P +L +hff+va+ ++ ++
  CCE28143.1 391 IINVLAQALYTLFAANDRQLRALQSGCFEYFQRG--MTDGPCGLLGGIIRQPSVLAYHFFSVAFLALWMN 458
                 *********************************9..79**************************998776 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   2.1e-12   2.3e-09       1     315 [.      21     357 ..      21     361 .. 0.74
   2 ?   -4.0   0.2       5.8   6.5e+03       5      17 ..     461     473 ..     460     475 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 2.1e-12
                    EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE................. CS
  FAD_binding_3   1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne................. 79 
                    e+dV++VGaG  G   a  L+++G +v+l+e++ ++ +   ++ l++  +  l+ lGl + ++  +a       + yn+                 
     CCE28143.1  21 EADVVVVGAGIFGCAMAFALANQGRSVILLERWMKEPDRIVGELLQPGGIAALKRLGLGHCVEGIDAIPCKGYNVIYNSsptlipyptidengevi 116
                    579**********************************************************99988766666677777778888888855555443 PP

                    ..CCCCCEEEEEHHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCC.CCCCEEEECCTTEEEEEEEEEEEE.....--GTT-H CS
  FAD_binding_3  80 ..lsdtpkaradlelesspervtvypqteleriLvehaeerglqvrfktevesleqdee.gvtaevrdketgeeetvrakYlvG.....aDGgrSt 167
                       ++t +   + e   s  + + ++q +  r  ++h + + ++++  + v++   d++ gv+++ ++ketge+   +a+Y  G     aDG+ S+
     CCE28143.1 117 yaWKGTGQEGKRPE-GRSFHHGKFIGQLR--RSCLAHENITVVETEVVKTVQGECTDQTlGVETRTTNKETGEK---KADYFFGhltiiADGYSSK 206
                    33222233333333.67777777888765..445555355557777777777655555449*************...677654433333******* PP

                    HHHHHTGGEEEEEEEEEEEEEEEEEEC-SCCCTTC..CEEEEECCTTEE..EEEECCE.TEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTT CS
  FAD_binding_3 168 vrktlgiefegeetvyeagvldvlfdadlsdivep..lvlilsaesrgv..mviPlen.tlerfyvqvearaekeersekfteeevkarlreivge 258
                     r+++  + + +  + ++  l+++ d++l+   e+  +v+i+s++ + +   ++  e  +l ++ + ++   ++++    + +++++ +l+++v +
     CCE28143.1 207 FREQVISNKKPTV-KSKFYALELI-DTELP--QEHfgHVIIGSKSYPTLlyQIGTHETrALFDVPIGIPEASPAAGGVRGYIKNVAIPALPASVRP 298
                    ****986633333.2356666655.44454..344548999999988766555555554445555555556666777999**************** PP

                    SSCEEEEEEEEEEEEEEEEESSSEET..TEEE-GGGTEEE-STTSHHHHHHHHHHHHHH CS
  FAD_binding_3 259 ktldveieevsawtvaqrvaekyrkg..rvflaGDAaHihpPtgGqGlNtaiqDavnLa 315
                    ++l++  + +    + +    + +++   + l GDA  +  P +G G+ +a +Da  L 
     CCE28143.1 299 AALKAMEDGKIPRSMPNSWLPPSKQNskGLVLLGDAFNMRHPLTGGGMTVAFNDALMLS 357
                    *****8888877777777665555554578899**********************9886 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5.8
                    EEE--SHHHHHHH CS
  FAD_binding_3   5 lIVGaGpaGlmla 17 
                    ++ G+Gp G++ a
     CCE28143.1 461 AVMGSGPLGFLKA 473
                    589******9877 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   2.1e-09   2.3e-06       1      28 [.      23      52 ..      23      55 .. 0.96
   2 ?    3.5   0.0      0.04        44     138     206 ..     129     207 ..     100     256 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.1e-09
                EEEEECTSHHHHHHHHHHHHTT..EEEEES CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllek 28
                dvv++G+Gi+G++ A++La +g  V+lle+
  CCE28143.1 23 DVVVVGAGIFGCAMAFALANQGrsVILLER 52
                9******************9999******8 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.04
                 TTEEEEEHHHHHHHHHHHHHHTT.-EEEESECEEE.EEEEE..TCEEEEE.EECT.EEE.EEEEE.....EEE--GGGHHH CS
         DAO 138 pdtgqvdpakltaalaraaealG.veilegtevtg.leeed..gkvwgve.rttp.gen.daada.....vVnaaGawsdl 206
                 p++  ++  k++  l+r + a+  ++++e  ev++ + + +  ++  gve rtt+ ++  ++ad+      ++a G  s++
  CCE28143.1 129 PEGRSFHHGKFIGQLRRSCLAHEnITVVET-EVVKtV-QGEctDQTLGVEtRTTNkETGeKKADYffghlTIIADGYSSKF 207
                 788889************888864788886.666526.3235566778888555544443456778888899999977653 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   2.4e-07   0.00027       1      27 [.      26      52 ..      26      53 .. 0.97

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.4e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-S CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllek 27
                   +vGaG++G+++A +La++g++v lle+
     CCE28143.1 26 VVGAGIFGCAMAFALANQGRSVILLER 52
                   8************************96 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   8.2e-07   0.00092     128     173 ..       7      52 ..       2      66 .. 0.84
   2 ?   -0.5   0.0       0.5   5.6e+02     183     230 ..     138     191 ..     126     214 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.2e-07
                  SECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 128 rtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlvea 173
                   ++ +a++ +++  ++++vvvG+G  G+ +A ala+ g  v l+e+
   CCE28143.1   7 PASLDARRRREEHHEADVVVVGAGIFGCAMAFALANQGRSVILLER 52 
                  555677777888888999********************99999997 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.5
                  HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE....EEE..EEETTSCEEEESE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxx..xxxxxxxxxxxxx RF
  Pyr_redox_2 183 kelsaaleealekeGvevklgtsvkeidgnge....kle..vvledgeeidadl 230
                  k +++  +  l +e+++v+  ++vk+++g+ +     +e  +++++  e +ad+
   CCE28143.1 138 KFIGQLRRSCLAHENITVVETEVVKTVQGECTdqtlGVEtrTTNKETGEKKADY 191
                  556666667778889999988888888888776666444223333333355554 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   1.4e-06    0.0016       1      35 [.      23      60 ..      23      99 .. 0.72
   2 ?    1.3   0.0      0.13   1.4e+02      96     137 ..     138     181 ..     113     225 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.4e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEE...ES-GGGT CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi...thkldti 35
                dv+V+G+G  Gc+ A+a+a+ G +v+L+    ++ d+i
  CCE28143.1 23 DVVVVGAGIFGCAMAFALANQGRSVILLerwMKEPDRI 60
                79*************************97773333333 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHTSTTEEEEES-EEEEEECT..TEEEEEEETTS- CS
        GIDA  96 lyskevteklenepnleiieeeveelivee..kkvkgvvtedge 137
                 ++  ++++   +++n++++e ev + +  e  +++ gv t++ +
  CCE28143.1 138 KFIGQLRRSCLAHENITVVETEVVKTVQGEctDQTLGVETRTTN 181
                 5667788888899*******999988665577777777665543 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   5.3e-07   0.00059       1      30 [.      23      52 ..      23      55 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.3e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvek 30
                   Dv+V+G+G+ G+a A ++a++G++v+++e 
     CCE28143.1 23 DVVVVGAGIFGCAMAFALANQGRSVILLER 52
                   9**************************985 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.1e-06    0.0012       1      30 [.      23      52 ..      23      55 .. 0.97
   2 ?   -1.6   0.0       1.1   1.3e+03      86     139 ..     137     192 ..     113     193 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.1e-06
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLvee 30
                  DvvVvG+g+ G+a A a a++G++v+L+e+
    CCE28143.1 23 DVVVVGAGIFGCAMAFALANQGRSVILLER 52
                  9***************************97 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
  FAD_oxidored  86 pevakavleemlaeagvtvllntrlveveke.gkriesvtveske.grktirAkvf 139
                    ++  ++    la +++tv+  ++++ v+ e  ++  +v++++ + ++ + +A++f
    CCE28143.1 137 GKFIGQLRRSCLAHENITVVETEVVKTVQGEcTDQTLGVETRTTNkETGEKKADYF 192
                   55555666677778899999999999999875457888888877744777777766 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.9e-05     0.022       1      31 [.      24      54 ..      24      63 .. 0.91
   2 ?    1.1   0.0      0.25   2.8e+02      54      81 ..     216     250 ..     197     253 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr 31
                ++++GaG  G+ +a  La++g+ v+l+ r+ 
  CCE28143.1 24 VVVVGAGIFGCAMAFALANQGRSVILLERWM 54
                689************************9986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.25
                 ECEEECCH.......SCCCCS-ESEEEE-SSGGGH CS
        ApbA  54 ppealsae.......ekselepidlvivtvKayqt 81 
                 +p++ s+        ++  +e++ +vi+  K+y+t
  CCE28143.1 216 KPTVKSKFyalelidTELPQEHFGHVIIGSKSYPT 250
                 333333335666666668899************98 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.1e-05     0.012       2      30 ..      24      52 ..      23      57 .. 0.95
   2 ?   -1.4   0.1       3.2   3.5e+03      50      70 ..     148     168 ..     140     182 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEES CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvver 30
                vvvvG+G  g+ +A ala+ g +V ++er
  CCE28143.1 24 VVVVGAGIFGCAMAFALANQGRSVILLER 52
                8*************************998 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.2
                 HHHTTEEEECSEEEEEEEEET CS
   Pyr_redox  50 lekngievllntkveeiegse 70 
                 l +++i+v+  ++v+ ++g+ 
  CCE28143.1 148 LAHENITVVETEVVKTVQGEC 168
                 566788888888888888654 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.2e-05     0.013      14      50 ..      18      53 ..      12      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.2e-05
                HHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 14 kyaesDvvivGaGssGLtaayylakkpdlkvailers 50
                ++ e+Dvv+vGaG  G + a+ la++ +  v++ler 
  CCE28143.1 18 EHHEADVVVVGAGIFGCAMAFALANQ-GRSVILLERW 53
                6789**********************.999**99985 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.2e-05     0.025       2      33 ..      24      55 ..      23      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.2e-05
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-HH CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvreee 33
                    + v+GaG +G a+A +la++g +v l  r  +
      CCE28143.1 24 VVVVGAGIFGCAMAFALANQGRSVILLERWMK 55
                    89**********************99766544 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.8e-05     0.065       1      31 [.      23      51 ..      23      59 .. 0.92
   2 ?   -3.6   0.0       3.9   4.3e+03     258     284 ..     328     354 ..     305     380 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlie 31
                   Dvvv+GaG  g+++A  l  a++g +v+l+e
     CCE28143.1 23 DVVVVGAGIFGCAMAFAL--ANQGRSVILLE 51
                   9*****************..99999999987 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.9
  Lycopene_cycl 258 vlaiGaaaglvhPaTGYsvarslaeap 284
                     + +G a  + hP TG  +  +   a 
     CCE28143.1 328 LVLLGDAFNMRHPLTGGGMTVAFNDAL 354
                    566788999999999977776666665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1     6e-05     0.068       2      34 ..      24      56 ..      23      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseea 34
                v v+GaG+ G  +a ++a++g +V l+++  + 
  CCE28143.1 24 VVVVGAGIFGCAMAFALANQGRSVILLERWMKE 56
                89************************9986555 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00012      0.14       2      32 ..      23      53 ..      22      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 dv+v+G+G  G   A ++a++g++V+lle+ 
   CCE28143.1 23 DVVVVGAGIFGCAMAFALANQGRSVILLERW 53
                 8***************************985 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00017      0.19       3      56 ..      12      64 ..      11      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
                  HHHHHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH CS
  Shikimate_DH  3 akkkleslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeel 56
                  a+++ e+++e+ v+++GaG  +  +a +L+++g   v+ + R ++  ++++ el
    CCE28143.1 12 ARRRREEHHEADVVVVGAGIFGCAMAFALANQGRS-VILLERWMKEPDRIVGEL 64
                  567778899*********************99987.999999888777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3453.96
//
Query:       CCE28144.1  [L=838]
Description: uncharacterized protein CPUR_01618 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.38   10.9   5.1        7.1    6.8   0.1    3.3  4  F_actin_bind  F-actin binding
        0.7   10.9   4.1        4.1    8.5   0.1    4.2  5  TPR_14        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F_actin_bind  F-actin binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.3   1.1e+04      71      92 ..     120     139 ..     115     141 .. 0.69
   2 ?    6.8   0.1   0.00079       7.1      56     105 ..     223     272 ..     195     274 .. 0.85
   3 ?    4.8   0.0    0.0032        29       7      52 ..     455     501 ..     451     507 .. 0.82
   4 ?   -2.1   0.1      0.46   4.1e+03      65      88 ..     785     809 ..     761     819 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.3
  F_actin_bind  71 LesqsreLrsavgsknssenek 92 
                   +e +sr L++   s+n+s +e+
    CCE28144.1 120 CEYSSRLLQPI--SRNKSHHER 139
                   78889999966..467776665 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00079
  F_actin_bind  56 ipphakFaFrellsrLesqsreLrsavgsknssenekllqdlqstvkeis 105
                    +  ++ +Fr+l + Le  +++L ++ ++k+++  +k+l++ ++ v+ei 
    CCE28144.1 223 SSLASRHHFRQLTADLERLLTDLEARIAEKKEKICDKDLSSAKDLVEEIA 272
                   5557899*****************88889999999999999999999986 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0032
  F_actin_bind   7 siLelvelleaalsnlkesvss.sqesaqllqlldkvenlhssCsgy 52 
                   ++ + +++l++++++ +e++ s +++s +  +l+d+ +n+  +C  +
    CCE28144.1 455 EVWSHIQVLRQSIEHPEEEAQSlENKSLYQKILSDATDNFVAQCRDH 501
                   56678899*******99986552448888999************876 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.46
  F_actin_bind  65 rellsrLesqsreLr.savgsknss 88 
                   r++  +L+ ++++++ ++ +s++ +
    CCE28144.1 785 RQAFEQLQVALEHVKqCRPSSRQRV 809
                   5556666666666665554445444 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.59   5.3e+03      13      28 ..     497     512 ..     483     514 .. 0.84
   2 ?   -3.3   0.1         2   1.8e+04      23      31 ..     581     589 ..     578     604 .. 0.52
   3 ?   -0.8   0.0      0.44   3.9e+03       3      36 ..     633     666 ..     631     670 .. 0.75
   4 ?    8.5   0.1   0.00046       4.1       6      30 ..     686     710 ..     682     716 .. 0.87
   5 ?   -2.4   0.0       1.4   1.2e+04      21      40 ..     767     786 ..     764     789 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.59
      TPR_14  13 alGdpdeAiallrral 28 
                 + +d+de +a lr+a+
  CCE28144.1 497 QCRDHDEVEAFLRKAV 512
                 6789999999999985 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2
      TPR_14  23 llrralala 31 
                 l++r+la+ 
  CCE28144.1 581 LYDRLLAKR 589
                 555555532 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.44
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddae 36 
                 a+ ++ +a++  +d  +A++ l  al ++ +d+ 
  CCE28144.1 633 ARHLISSAYRKGRDVSRALTPLLIALFQQGEDPS 666
                 6677788999999999999988887777666665 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.00046
      TPR_14   6 alaeallalGdpdeAiallrralal 30 
                 a+a+al a+G++ +Ai++++ a + 
  CCE28144.1 686 AAAQALSARGKHSAAIKVCEIAARE 710
                 89******************99775 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 1.4
      TPR_14  21 iallrralalaPddaeawll 40 
                 ++ +  +++++P++ e++++
  CCE28144.1 767 MKKAASRISTQPEQSEIHRQ 786
                 5556667899****999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 5465.95
//
Query:       CCE28145.1  [L=267]
Description: probable norsolorinic acid reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-44  150.8   0.0    5.6e-44  150.5   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
      0.081   12.2   0.0       0.17   11.1   0.0    1.5  1  IMPa_N_2      Immunomodulating metalloprotease N-terminal dom


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.0   6.2e-48   5.6e-44      84     292 ..      10     213 ..       6     215 .. 0.95

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 6.2e-48
                   HHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHH CS
  Aldo_ket_red  84 eniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegll 176
                   ++++ s+++sl++L+tdy+Dll++H++d+s + i ev++ l++lv +Gk+ ++G+S  ++++++ka    ++++  +++++q +++  ++++e+ ++
    CCE28145.1  10 KSLQISVNASLRKLQTDYIDLLYVHWWDYSAS-IPEVMQSLNQLVTSGKVLYLGISDAPAWIVSKAneyaRNHGLRQFSVYQGRWSAACRDFERDII 105
                   567889**************************.**************************************************************** PP

                   HHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHH CS
  Aldo_ket_red 177 elckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqledn 273
                   ++ck++g+++ ++++lggG ++++  +  + ++k++++            +  ++l+++a+ ++  ++ +al+y++++ + +++++g +++e+l++n
    CCE28145.1 106 PMCKAEGMGITPWGALGGGNFKSEDARRLNEGRKSEASA--------ADIKISRALEAIAHRRKTAITSIALAYVMQKTPYVFPVVGGRKVEHLKAN 194
                   **********************88887777776666654........789*********************************************** PP

                   HGGGG----HHHHHHHHHH CS
  Aldo_ket_red 274 ldalelklseeevaeldel 292
                   ++al ++ls +e+  ++++
    CCE28145.1 195 VEALTIELSGQEIHDIEAA 213
                   *************999875 PP

>> IMPa_N_2  Immunomodulating metalloprotease N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.9e-05      0.17     144     189 ..       5      49 ..       3      56 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.9e-05
                 E-TT.---.TTHHHHHHHHHHTT--EEEE--STTS--HHHHHHHHHT CS
    IMPa_N_2 144 lGssvase.aalsallekylaakkpllYlhtpsWnssplaqqvlaam 189
                 +G++++s   +++a+l+k++++   llY+h  +W  s+   +v++++
  CCE28145.1   5 IGNGTKSLqISVNASLRKLQTDYIDLLYVH--WWDYSASIPEVMQSL 49 
                 7889666549********************..999998888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1956.18
//
Query:       CCE28146.1  [L=349]
Description: related to GLE2-required for nuclear pore complex structure and function [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-13   49.0   6.0     0.0035   18.1   0.5    5.7  6  WD40         WD domain, G-beta repeat
    5.8e-06   26.5   0.0        1.4    9.3   0.0    3.9  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.047   4.2e+02      20      36 ..      24      41 ..      10      43 .. 0.68
   2 ?    2.7   0.0     0.031   2.7e+02       8      34 ..      57      84 ..      50      85 .. 0.81
   3 !   18.1   0.5   3.9e-07    0.0035       6      36 ..      96     127 ..      93     129 .. 0.89
   4 ?   -2.3   0.0       1.2     1e+04      22      29 ..     174     181 ..     154     183 .. 0.60
   5 !   17.4   0.0   6.6e-07    0.0059      12      38 .]     250     280 ..     234     280 .. 0.81
   6 !    6.2   0.0    0.0024        21      11      28 ..     295     312 ..     285     316 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.047
                TTSSE.EEEEETTSEEEE CS
        WD40 20 pdgaw.lasGsdDgtvri 36
                p+ +  ++ +s+D++v+ 
  CCE28146.1 24 PNDSSkVLVSSWDKNVYC 41
                4444433458****9976 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.031
                ESS.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40  8 tGH.ssvtslafspdgawlasGsdDgtv 34
                  H  +v +++f  d +  +++s D tv
  CCE28146.1 57 IEHrAPVLDVCFGADDNEAFTASLDWTV 84
                369899*****99999998899989887 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 3.9e-07
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 +l+ H  +v+++ +s+d++ l+s+s+D t+ +
  CCE28146.1  96 SLSRHtAPVRCVVYSKDHNILVSASWDSTINL 127
                 67889888*********************987 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.2
                 SSEEEEEE CS
        WD40  22 gawlasGs 29 
                  +++asG+
  CCE28146.1 174 AQLFASGG 181
                 23366776 PP

  == domain 5  score: 17.4 bits;  conditional E-value: 6.6e-07
                 S....EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 s....vtslafspdgawlasGsdDgtvriWd 38 
                 +    v++laf+p +  +asG+ Dgtv +Wd
  CCE28146.1 250 DivypVNALAFHPVHGTFASGGGDGTVALWD 280
                 155559***************88*******9 PP

  == domain 6  score: 6.2 bits;  conditional E-value: 0.0024
                 SSEEEEEEETTSSEEEEE CS
        WD40  11 ssvtslafspdgawlasG 28 
                 +sv +lafs dg++la G
  CCE28146.1 295 NSVAALAFSNDGKYLAIG 312
                 569999*********977 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.29   2.6e+03      36      66 ..      25      55 ..      19      85 .. 0.74
   2 !    7.0   0.0   0.00078         7      33      69 ..      96     132 ..      75     161 .. 0.83
   3 !    9.3   0.0   0.00016       1.4      40      77 ..     254     291 ..     243     297 .. 0.90
   4 !    5.4   0.0    0.0025        22      39      57 ..     295     313 ..     290     318 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.29
  ANAPC4_WD40 36 kedsevrsLaWkpdgklLavaysdgevrlld 66
                 +++s+v   +W ++     ++ sdg++ l +
   CCE28146.1 25 NDSSKVLVSSWDKNVYCYQIGDSDGRLTLTK 55
                 5666777777888888888888888887765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00078
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  + + +   vr++ +++d ++L+ a  d++++l++ +s
   CCE28146.1  96 SLSRHTAPVRCVVYSKDHNILVSASWDSTINLHNLSS 132
                  55678899***********************998765 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00016
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                   v++La++p    +a +  dg+v l dae ++ +++++
   CCE28146.1 254 PVNALAFHPVHGTFASGGGDGTVALWDAEAKRRLKQYQ 291
                  5899**************************99998876 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0025
  ANAPC4_WD40  39 sevrsLaWkpdgklLavay 57 
                  ++v +La+++dgk La+++
   CCE28146.1 295 NSVAALAFSNDGKYLAIGV 313
                  5799*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2643.75
//
Query:       CCE28147.1  [L=315]
Description: probable translation initiation factor eIF-2 alpha chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-36  125.4   0.0      2e-36  124.6   0.0    1.5  1  EIF_2_alpha  Eukaryotic translation initiation factor 2 alpha
    1.1e-13   51.4   0.6    2.1e-13   50.4   0.6    1.6  1  S1           S1 RNA binding domain


Domain annotation for each model (and alignments):
>> EIF_2_alpha  Eukaryotic translation initiation factor 2 alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.0   2.3e-40     2e-36       1     116 []     126     242 ..     126     242 .. 0.96

  Alignments for each domain:
  == domain 1  score: 124.6 bits;  conditional E-value: 2.3e-40
                  HHHCTHHHHTTTTS-HHHHHHHHHSTTHHHHHTTS-.TTTHHHHHHCTHHHHHHT-EEEEEEEEEEE-STTHHHHHHHHHHHHST.S..TTSSSEEEE CS
  EIF_2_alpha   1 lyeevgwklyekyghaydaFklaitdeevldkleip.eeveeaLveiikkklkpqkvkiradieltcftkdGveaIkeaLkageeasneeeveeeeev 97 
                  lye+++w+l++kygha daFkl+it+ ev++++++p + ve++L+ +i+k+l+pq  k+rad+e+tcf+++G++a+k+aL+++e+ +++e+++ +++v
   CCE28147.1 126 LYETIAWPLNKKYGHAIDAFKLSITNAEVWNDVTFPsKPVEDELKLYISKRLTPQRTKVRADVEVTCFGYEGIDAVKTALRTAEAGNDAEDANADTQV 223
                  7*********************************99677******************************************9999888899999**** PP

                  EEEESSSSEEEEEEEES.. CS
  EIF_2_alpha  98 kikliapPeYvltvetldk 116
                  k+kl++pP+Yvlt+++ dk
   CCE28147.1 224 KVKLVSPPLYVLTCTSFDK 242
                  **************99886 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.6   2.4e-17   2.1e-13       2      75 .]      14      88 ..      13      88 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 2.4e-17
                STTTCEEEEEEEEEETTEEEEEET..TTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1  2 pekgevveGeVtsvtkgGafVelg..ngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75
                pe++  v+ +V+++ ++Ga+V l+   +++g++ +selsr+ r++++ + ++vG    v+vl+vdk++++i+ls++
  CCE28147.1 14 PEIDSFVMVNVKQIAEMGAYVKLLeyDNIDGMILLSELSRR-RIRSIQKLIRVGRNEVVVVLRVDKQKGYIDLSKR 88
                789999******************999**************.********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2332.63
//
Query:       CCE28148.1  [L=345]
Description: related to mitochondrial transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-61  204.4   0.4    7.1e-21   73.9   0.1    3.2  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   2.7e-23   4.9e-19       4      95 ..      13     103 ..      10     105 .. 0.93
   2 !   59.1   0.1   1.7e-20     3e-16       6      93 ..     110     202 ..     107     206 .. 0.90
   3 !   73.9   0.1   3.9e-25   7.1e-21       2      93 ..     210     334 ..     209     337 .. 0.81

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 2.7e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHH.HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGl.rglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 ++l+ ++aGg++g+++ l+++ +d+vKtr q +++s +  +s  + + +++i+++eG+ rgly G++p+l +++pa++l f++ye  kr+l +
  CCE28148.1  13 PYLHCMIAGGIGGSTGDLLMHSIDTVKTRQQGDPNSPSRYTS--LGRSYYTIWRQEGIrRGLYGGWIPALGGSFPATVLFFGTYEWSKRFLID 103
                 68899*****************************99987665..99************999*****************************976 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 1.7e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 l++l aG l+ ++a+++  P +v+Ktrlq+q++ ++   +++     ++d++++i+++eG ++l+ G+ ++l r +p sal+f++ e+++ + 
  CCE28148.1 110 LAYLSAGFLGDIAASIAYVPSEVLKTRLQLQGRYNNPHFKSGynyrgTVDAVRTIVRTEGASALFYGYKATLYRDVPFSALQFMFWEQFHAWA 202
                 67899*************************99997765544478889*****************************************98775 PP

  == domain 3  score: 73.9 bits;  conditional E-value: 3.9e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...................CCCSSTTTSCSS........................HHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqt...................qkksskksksaa........................ildvlkkiyk 57 
                 +++v  e+++G++ag +a+++t+PldvvKtrlqt                   q          +                        i+  l+ iy+
  CCE28148.1 210 DIGVPLEIMTGATAGGLAGVLTCPLDVVKTRLQTqvnrpvdspsklkevaataQ----------KrhivtsaagaprpqpgaaalqtssIITGLHVIYR 298
                 5778889***************************66666666666655555540..........0444555555666666666777777********** PP

                 HHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  58 eeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +eG++g +rG++p+ ++++++s+++++ly+ l + +
  CCE28148.1 299 TEGITGWFRGVGPRGVWTFIQSGCMLFLYQRLLHQF 334
                 *****************************9988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2716.89
//
Query:       CCE28149.1  [L=390]
Description: uncharacterized protein CPUR_01623 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3248.71
//
Query:       CCE28150.1  [L=436]
Description: uncharacterized protein CPUR_01624 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-22   78.5   0.0    8.3e-22   77.6   0.0    1.5  1  DDE_Tnp_4  DDE superfamily endonuclease
    6.4e-09   35.8   2.2    1.4e-08   34.7   0.2    2.5  2  DDE_Tnp_1  Transposase DDE domain
  ------ inclusion threshold ------
      0.011   15.5   0.9      0.034   13.9   0.9    1.8  1  HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   1.4e-25   8.3e-22       1     158 []     203     365 ..     203     365 .. 0.88

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 1.4e-25
   DDE_Tnp_4   1 iDgteipiqrpsnleeraqtysnykkkntlkvlivvdpngkiifvskgypGsvsDkeilensgllkalkeavkpgdvilaDkgFklse.kllvpykk.. 96 
                 iDgt+++  +p +   +++ + n+k+k t +vl++++ +g +++v  g +Gs  D+ +l++   ++ lk  v+ g + laD+gF  ++  +l+p+++  
  CCE28150.1 203 IDGTHFEAFIPVK---DQEKFWNRKGKVTQNVLAACTLDGLFTYVMAGAEGSFNDSALLAQA-CSRSLK--VPDGRYYLADAGFGSNRvGFLTPVPGqv 295
                 8*******99997...777777***********************************99976.445545..7899**********9996668999999* PP

   DDE_Tnp_4  97 ........kkkkqlseeevefnraiasarihvErvigrlkgrfrilrsrlriklvekidkivkvccvLhN 158
                         ++  +  ++++ +n +++s r+++E+v+grlk+r+ri rs  ++   ++  +i++++ +L N
  CCE28150.1 296 ryhlqefgRHDLRPANADELYNLRHSSLRMIIEQVFGRLKRRWRITRSGPPEYSFRDQIAIIYIVTALQN 365
                 ******777777778888****************************655554448888899999999987 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.2   2.3e-12   1.4e-08       6     192 ..     200     342 ..     195     344 .. 0.72
   2 ?   -2.1   0.1      0.41   2.4e+03     107     141 ..     384     419 ..     367     427 .. 0.68

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.3e-12
   DDE_Tnp_1   6 vlivDattvrvpgtk..edarwgykggkykygyklhiavdtrsglilsvvit.pgnvhdskglkq.lldelrprkgklvlaDaGYasaelldtleekgv 100
                 + ++D+t++++  +   ++++w   + k+k ++++ +a+ + + l++ v     g+ +ds  l q + ++l+ ++g+++laDaG++  + + +l     
  CCE28150.1 200 IGAIDGTHFEAFIPVkdQEKFW---NRKGKVTQNVLAACTLDG-LFTYVMAGaEGSFNDSALLAQaCSRSLKVPDGRYYLADAGFG-SNRVGFLT---- 289
                 7899****99855556677777...78888999******9995.555555544************777777766***********9.44445555.... PP

   DDE_Tnp_1 101 dyiirlkkntklyrkgaeskrrgrlrkhdrnkil..tksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldr 192
                     +++++++++             + + ++ l     +++ n                          + ++lR+ iE+vF++lkr++++ r
  CCE28150.1 290 ----PVPGQVRYH------------LQEFGRHDLrpANADELYNL-------------------------RHSSLRMIIEQVFGRLKRRWRITR 342
                 ....554555443............23333333300334445555.........................79*******************987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.41
   DDE_Tnp_1 107 kkntklyrk.gaeskrrgrlrkhdrnkiltksqkrr 141
                 ++ +++ r+  ++++r++r +  +r++ l+ + k++
  CCE28150.1 384 RDSAREARRrARHRERADRKCTGMRGRDLRDVIKKQ 419
                 444445555666777777777777777777766655 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.9   5.7e-06     0.034       8      47 ..     128     167 ..     122     171 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.7e-06
   HTH_Tnp_4   8 qllltLvyLRlnltyqdLayrFgvsestvsrifhkwvdlL 47 
                 +l+++L  L ++ t++  a  F + + +v+r+fh++   +
  CCE28150.1 128 KLMVFLYMLGHGATQRNAAMFFHMGQASVHRVFHELRRAM 167
                 7899999999*************************98877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 3640.47
//
Query:       CCE28151.1  [L=341]
Description: uncharacterized protein CPUR_01625 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0027   18.3   0.5     0.0082   16.8   0.3    2.0  2  DUF573          Protein of unknown function, DUF573
  ------ inclusion threshold ------
      0.078   13.4   0.2       0.23   11.9   0.2    1.7  2  Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> DUF573  Protein of unknown function, DUF573
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   9.2e-07    0.0082       3      69 ..      24      91 ..      22     116 .. 0.87
   2 ?   -2.7   0.0       1.1   9.7e+03      11      28 ..     254     271 ..     250     287 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.2e-07
      DUF573  3 rlWseeDEielLqglldfksktgts.pk.sdldafyeavksslssdvsksqlseKlrrLkkkyrnavsk 69
                + Ws+eD  +lL++ll+ +++++   p+ ++   ++e ++++l+ +   s+l+   +r+++k++ ++s 
  CCE28151.1 24 KSWSKEDTFKLLEELLEARRNRELLhPSdRSAVRVFEDIAETLQ-RLHPSNLIWNAKRVRNKHDDMASL 91
                68****************999999526556666778*******9.9999**************999875 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.1
      DUF573  11 ielLqglldfksktgtsp 28 
                 i+lL g+ + + k++ts+
  CCE28151.1 254 ISLLHGIRSKRPKHETSN 271
                 778888877777777753 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   2.6e-05      0.23       3      69 ..      25      94 ..      23     107 .. 0.77
   2 ?   -2.5   0.0      0.76   6.8e+03      10      44 ..     122     158 ..     117     166 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.6e-05
                    SS-HHHHHHHHHHHHH...HHHHHHH..SS--HHHHHHHHHHHHHHC--...--HHHHHHHHHHHHHHHHC CS
  Myb_DNA-bind_4  3 kWteeetklLieawge.rilelrfqergkkrnkklWeevaeamaergyk...rspeqCkeKienLkkrYkk 69
                     W++e t  L+e   e r  ++ +   + + +  ++e++ae +++ + +    +++ +++K +++   Y+k
      CCE28151.1 25 SWSKEDTFKLLEELLEaRRNRELLHP-SDRSAVRVFEDIAETLQRLHPSnliWNAKRVRNKHDDMASLYEK 94
                    79999999999777663433444444.6667777**********997653447*************99987 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.76
                     HHHHHHHHH..HHHHHHH.....SS--HHHHHHHHHHH CS
  Myb_DNA-bind_4  10 klLieawgerilelrfqe...rgkkrnkklWeevaeam 44 
                     + Li+ +g+ i++  f++    +   n ++++ev +++
      CCE28151.1 122 NKLITRYGT-IMQRVFRNgllCSDTFNLDHYDEVFANV 158
                     567777777.6666666655533333444666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2553.53
//
Query:       CCE28152.1  [L=203]
Description: related to ribosomal protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-09   38.3   0.0    2.6e-09   37.3   0.0    1.5  1  Ribosomal_L23  Ribosomal protein L23
  ------ inclusion threshold ------
       0.02   15.0   0.4      0.049   13.7   0.4    1.6  1  Acyltransf_C   Acyltransferase C-terminus


Domain annotation for each model (and alignments):
>> Ribosomal_L23  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   2.9e-13   2.6e-09      19      80 ..      40     104 ..      26     108 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2.9e-13
                    E.EEEEE-SS-THHHHHHHHHHHHT--EEEEEEEEE--EBE.SSSSS...EEBE--EEEEEEEESS CS
  Ribosomal_L23  19 nkyvFeVakdanKleikkaveklFgVkVekVntlnvkgkkk.rvgrk...vgrrksyKkaiVtLke 80 
                    +++ F+V+++++K++++++++++++V+V+kV++++ +     r+  +   ++r  s K ++V+L++
     CCE28152.1  40 HEACFQVPLTFTKFDLRDYLWNVYNVEVTKVRSYVKELPLSqRH-PNtrsSYRPLSLKVMTVELTK 104
                    4689******************************9998887432.2234477888*********43 PP

>> Acyltransf_C  Acyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4   5.5e-06     0.049      23      60 ..     109     146 ..      98     161 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.5e-06
  Acyltransf_C  23 PedeeelaeWlhelfeeKDklleeFyktgtFepgkevk 60 
                   Pe  ++l+ W +el+++ +k++++   +++ +++ +  
    CCE28152.1 109 PEAPTDLEPWYNELWKTREKVMDKLESEQKLKHNSKIP 146
                   89999**********************99996433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1545.14
//
Query:       CCE28153.1  [L=412]
Description: uncharacterized protein CPUR_01627 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-29  102.8   0.0    2.4e-29  102.4   0.0    1.2  1  MT-A70    MT-A70


Domain annotation for each model (and alignments):
>> MT-A70  MT-A70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.0   1.4e-33   2.4e-29       1     172 []     215     395 ..     215     395 .. 0.86

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 1.4e-33
                 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS....-GGGCECCEEEEEEEEETTCHHHH......HHHHHHHCT-EEEEEEEEEEE-TTSCBS-BS CS
      MT-A70   1 fdviiidPpweeklvarkkelpyktlneeelkaL....pipelldkrslvflWvtnrellel......krellkkWglelveeltwlkinklgepiatl 89 
                 fd+i++dPpw +++ +r++ +++  ++ +e+++L    p+ + l+ ++lv++W+tn++ + +      +  ++ +Wg++l +e++wlki+++g+p++++
  CCE28153.1 215 FDLIVLDPPWPNRSARRRSAAYTPARHLDEMRTLltsiPVADHLARDGLVAVWITNKASIPEllaspdGDSVFASWGVQLAAEWIWLKITADGKPLYDM 313
                 89************9999988888888888765433339999999************99877677788899**************************85 PP

                 -TTSSSBB-EEEEEEEEES---TTT.TTB-TTSSBSEEEEE-CTTTSS-THHHHHHHHHC.......TCS-EEEET--G--TTEEEEETT CS
      MT-A70  90 esgavlkkskEhllvgvkgnvkrstdkiinknvdtdliisperehsrKPpelfellehll.......esarkLelFaRslrpgwltvGne 172
                     v +k++E++l++ +  +       +     +++i++  ++hsrKP++   l + +         +   Le+FaR+l++gw ++G+e
  CCE28153.1 314 --ASVWRKPWEKILIAKRIGAP------TPPRLRSKVIVAAPDVHSRKPNLRGLLGQVFGdgdgrgeAQYCGLEVFARNLTAGWWSWGDE 395
                 ..5569***********98775......2345799***************7777777777999987444448****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3194.63
//
Query:       CCE28154.1  [L=383]
Description: probable coenzyme A transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-62  207.9   2.6    1.9e-22   79.0   0.1    3.9  3  Mito_carr        Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.036   13.2   0.0        1.6    7.8   0.0    2.5  2  Serine_protease  Gammaproteobacterial serine protease


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.1   2.1e-26   1.9e-22       2      93 ..      61     154 ..      60     158 .. 0.94
   2 !   57.6   0.0     1e-19   9.1e-16       4      94 ..     162     268 ..     160     271 .. 0.80
   3 !   68.5   0.1   3.9e-23   3.5e-19       3      93 ..     292     381 ..     290     383 .] 0.94

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 2.1e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa..ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +  v+++ +aGg+ag++a+++++Pld+vK+ +q+++ + +k + ++  ++ ++k iy++eG +gl+rG +++llr++p++++kf++ye+++  l
  CCE28154.1  61 WDYVWRSGVAGGVAGCAAKTLVAPLDRVKILFQASNPQFAKYTGSSfgVATAMKDIYHSEGGKGLFRGHSATLLRIFPYAGIKFLAYEQIRAKL 154
                 6789*********************************99987766699******************************************9876 PP

  == domain 2  score: 57.6 bits;  conditional E-value: 1e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHH...................HHHHHHGGGTTHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiy...................keeGlrglyrGllpnllrvapasalkf 83 
                 ++l++ll+G+lag++++++t+Pl+vv++rl  + k++  s    + ++ ++iy                      Gl  +yrG+ p+ll++ p++++ f
  CCE28154.1 162 TPLRRLLSGSLAGVTSVFFTYPLEVVRVRLAFETKREGRSS---LTSICRQIYkekpvvhdtgqgpvaasvaPRGGLFNFYRGFYPTLLGMLPYAGMSF 257
                 57899***************************999988766...66666777744444444444444444336777777******************** PP

                 HHHHHHHHHHC CS
   Mito_carr  84 vlyetlkrlll 94 
                 ++ +t+ +ll 
  CCE28154.1 258 LTHDTVSDLLR 268
                 ******99986 PP

  == domain 3  score: 68.5 bits;  conditional E-value: 3.9e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 l+ ++el +Gg+ag++++++ +Pl+v++ r+q+++  +   k + + ++ + i+ke G+rg++ Gl++  ++v+p  a+ f +ye +k  l
  CCE28154.1 292 LRSWAELTSGGIAGLISQTCSYPLEVIRRRMQVSGAVGDGHKMR-LGETARLILKERGVRGFFVGLTIGYVKVIPMVAMSFYTYERMKLAL 381
                 6789*********************************9987765.******************************************9776 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00018       1.6     174     198 ..     164     188 ..     147     214 .. 0.84
   2 ?    2.3   0.0    0.0083        74     176     211 ..     297     332 ..     293     346 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00018
  Serine_protease 174 ynkllaGalsGviAtvlttifnsyk 198
                       ++ll+G l+Gv+  ++t+++   +
       CCE28154.1 164 LRRLLSGSLAGVTSVFFTYPLEVVR 188
                      689*****************98766 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.0083
  Serine_protease 176 kllaGalsGviAtvlttifnsykDkkllaskvengr 211
                      +l++G ++G+i  ++++++   + +  +   v +g+
       CCE28154.1 297 ELTSGGIAGLISQTCSYPLEVIRRRMQVSGAVGDGH 332
                      689****************99999988888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2873.08
//
Query:       CCE28155.1  [L=498]
Description: probable cytochrome P450 monooxygenase (lovA) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-31  109.2   0.0    2.9e-31  108.8   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.0   1.6e-35   2.9e-31     114     446 ..     141     470 ..     131     482 .. 0.81

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 1.6e-35
                 HHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCCSCHHHHHHHH CS
        p450 114 leelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp.llkylptkllrklke 211
                   +l ee a  l e+l ++++ + ++++++++ + ++ ++++i++g+++  +e     + + av++ + + ++ ++ + l  + l++ ++ + +r +  
  CCE28155.1 141 TQPLNEETALALSEALTEDQDWH-TISLKHVVLHLTTRISSRIFLGKELCRNEAWLKVSREYAVAAFMAVRQAVVWPPPL--RgLISRFMPWSRRAVS- 235
                 45677788889999999999999.8**********************977444444445555555554444433333333..3344444445555555. PP

                 HHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTT CS
        p450 212 avkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdk 310
                   +++   + +++e r+++  s +  +++ +   l+a+    g+   +d  la+ +l  l  +++Tt+  ls a   La + e  e lr Ei e l ++
  CCE28155.1 236 LIEDARRCMAPVLERRQRERASGNYIPYHDAIEWLEAS-SIAGK---DDPVLAQLALSAL--AIHTTADLLSQAVGDLAVHHEFVEPLRDEITECLAQD 328
                 558888899**************888888777888886.23333...4555555555555..59********************************774 PP

                 TT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS........CTESSCT CS
        p450 311 reptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg........nskrksf 400
                    + + l ++++ld +ikE++R+ p++ +++ R+v +dv++++  ++pkG+   ++ +    dp+++ n+ + d  RF ++++        +    s 
  CCE28155.1 329 -GWERKSLYNMKLLDSCIKESQRMKPLAMISMGRRVETDVTLSDgTFLPKGSLTAFSCQR-RWDPTLYANASQWDGARFFNKRKekgqeqtaQLVATSP 425
                 .69****************************************99******998877766.568****************999999999998444789* PP

                 T--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEE CS
        p450 401 aflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppi 446
                  +++FG G+ +C+G+ +A    k++la+lL +++v l ++++p++ 
  CCE28155.1 426 DHMAFGYGRQACPGRFFAASVTKIVLAHLLLKYDVRL-HDREPQTA 470
                 ************************************8.76766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3558.95
//
Query:       CCE28156.1  [L=740]
Description: uncharacterized protein CPUR_01630 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-10   39.5  10.3    9.2e-10   38.5  10.3    1.5  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
    0.00033   19.8   0.0    0.00084   18.5   0.0    1.7  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5  10.3     1e-13   9.2e-10       2      33 ..      11      41 ..      10      46 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1e-13
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfy 33
                aC++Cr++K++C++k+P CsnC++++ +C+ +
  CCE28156.1 11 ACQSCRRRKIRCSRKFP-CSNCASRGIKCVQF 41
                9****************.***********965 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   9.3e-08   0.00084      87     260 ..     324     492 ..     203     499 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.3e-08
  Fungal_trans  87 pssslwilqsLlllelyektssdralher.hhgvavrlarslgLhrnpsyvgkks.lwklweeeaesrrRlwwaaFylDktialklGrpp...lldd 178
                     +sl  lq+  +l  ++  ++  +   r + ++ +++ar+lg hr     +k s  +k+ +e  e+ rR+ww    lD ++al  G +    +++ 
    CCE28156.1 324 GLTSLVCLQAQTILLKVSCYMEGSSVRNRnLGSTSITMARELGIHRIDLPGEKRSsAFKSEIE-VEIARRVWWDNATLDWFLALFPGPQEgvyTMNP 419
                   3334444442222222222222223334456677788*********99998888845666666.**********************999997779** PP

  Fungal_trans 179 sqinlpLPcddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeler 260
                    q+ ++ P +    ++ d   + + ++   + e++  + +++ ++L++i  ++ +  + i+ +++++++q    +++ el+ 
    CCE28156.1 420 RQMAVNKPSNMA-ADFGDGQQTLFTNG---QAEQHDASYFLGRIRLAEIGREFID-SCPISEPSSHEYKQ----EKLHELNL 492
                   ******999999.88888888888888...7888899999999999999999999.99999999999999....55555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 5322.16
//
Query:       CCE28157.1  [L=1041]
Description: related to nuclear transport factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-14   52.9   0.1    2.9e-13   49.5   0.0    2.9  3  IBN_N     Importin-beta N-terminal domain
      7e-06   26.2   0.8      4e-05   23.7   0.4    2.5  2  Xpo1      Exportin 1-like protein
     0.0007   18.5   0.1     0.0036   16.2   0.0    2.0  2  Cse1      Cse1


Domain annotation for each model (and alignments):
>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.012        71      11      39 ..      12      41 ..      10      43 .. 0.86
   2 !   49.5   0.0   4.9e-17   2.9e-13       2      73 ..      38     110 ..      37     111 .. 0.91
   3 ?   -3.3   0.0       1.5   9.1e+03      12      33 ..     604     624 ..     602     625 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.012
                STCHHHHHHHHHHC.TTSHHHHHHHHHHHH CS
       IBN_N 11 qpgflsallqilan.seselevRqlAalyL 39
                +p +l al++il+  + +++  Rq+A+++L
  CCE28157.1 12 NPLSLTALCRILQAaTGNDHAQRQSAGQQL 41
                6778999******988888899******99 PP

  == domain 2  score: 49.5 bits;  conditional E-value: 4.9e-17
                 HHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGG.SCCCHCGSXHHHHHHHHHHHHHHHH CS
       IBN_N   2 ekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWs.deeekqslpseekeqIrnnllnllg 73 
                  +qL  +e++pg+ s+l+ +  +++ ++ vR+lA+++Lkn i+k+W+  +++k+ + +eek +Ir+ l +  +
  CCE28157.1  38 GQQLAAWEQTPGYYSSLQTVYLDKSVPNDVRFLAVIQLKNGIDKYWRlYSQPKNGIKPEEKGLIRSRLFQGTV 110
                 69*********************************************7555555**************99765 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.5
                 TCHHHHHHHHHHCTTSHHHHHH CS
       IBN_N  12 pgflsallqilanseselevRq 33 
                  + ls+l+q++++ + + e+++
  CCE28157.1 604 ADVLSQLMQLVQSVDVD-ETKL 624
                 67899999999999988.8876 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.4   6.7e-09     4e-05       9     111 ..     122     229 ..     115     232 .. 0.86
   2 ?   -1.9   0.0      0.54   3.2e+03      98     115 ..     729     762 ..     710     788 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 6.7e-09
                 HHHHHHHHHHHTTTTSTTHHHHHHHHHCT.....HHHHHHHHHHHHHHHHHHHT..SHTTTSCHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
        Xpo1   9 aealaelflqeypnnWpsffddllsllsss....psglelllriLkvlpeEiad..fsrskleqer.rndlkdllrsnvqkilelllqileqsqskkqs 100
                 a ++a+ ++ +yp +Wp+++ +++sll+s+    +++l  +l++L+++ +E+++   ++s+ + +  + ++  ll++   +  + +l+ l +sq ++  
  CCE28157.1 122 AFVVAKVIRIDYPTDWPDALANIISLLRSNknsnQQQLHGTLEMLLRVVKELGTarLKKSQTSLQSvTPEIVYLLNEIYADRSSAWLSFLTSSQGTE-- 218
                 67999**********************9998999999****************98755555555555889999999999999999999999999876.. PP

                 HHHHHHHHHHH CS
        Xpo1 101 selveavLkcl 111
                 s+ + a+L+ l
  CCE28157.1 219 SDANVAMLNSL 229
                 88888888766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.54
                 C................HHHHHHHHHHHHHHHHT CS
        Xpo1  98 k................qsselveavLkclsswv 115
                                  ++se+++++L +++s++
  CCE28157.1 729 LapevielaelalplleYQSETASQALSAVESYL 762
                 2444444444444444456899999999999997 PP

>> Cse1  Cse1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.1e-07    0.0036     175     269 ..     400     489 ..     393     508 .. 0.78
   2 ?   -1.0   0.0       0.1   6.1e+02     223     282 ..     618     677 ..     595     690 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.1e-07
                 HHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHH.SCSS---SHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-H CS
        Cse1 175 yaelFeneevlkeiiekvvlpnvtlResDeElFEdepieyirrD.lEGsdvdtRrraat.dllkeLkekfeakvtevvleyvekllekykenpsanW 269
                 + +lF++e v+ +i++ ++   + +R+sD El+E++p e+ +++  EG   +   r ++ +l  +L ++f+ +++  +l+y ++  +     p+a+ 
  CCE28157.1 400 H-DLFKDELVI-QIVNCIISHLFVFRRSDLELWEEDPQEWEQQEqSEGNAYEWEVRPCAeKLFLDLLTNFKRLIIPPLLSYFQTAQS-----PQADI 489
                 4.488877666.799*************************8775279*9999887766516889***********999999887654.....44444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.1
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHH CS
        Cse1 223 dvdtRrraatdllkeLkekfeakvtevvleyvekllekykenpsanWkkkdlaiyLvtsl 282
                 dvd  + a  + ++ L  ++ea+v +   + + +l   +++  ++++  k+++i ++ +l
  CCE28157.1 618 DVDETKLAILESVRILVMRMEAQVSQFGDQLMVALPGVWQSCGNEEYMIKQAVIAIFAAL 677
                 555555555556666666666666666555555555666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1041 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 7236.84
//
Query:       CCE28158.1  [L=515]
Description: related to threonine--tRNA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-35  120.9   0.1    2.2e-31  109.2   0.0    2.2  2  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    1.5e-06   28.3   0.0    3.7e-06   27.0   0.0    1.7  1  HGTP_anticodon  Anticodon binding domain
  ------ inclusion threshold ------
      0.027   14.3   0.0      0.062   13.1   0.0    1.6  1  DUF865          Herpesvirus-7 repeat of unknown function (DUF


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.0   3.6e-35   2.2e-31       3     150 ..     163     344 ..     162     353 .. 0.90
   2 !    9.4   0.1   0.00016      0.94     158     178 ..     370     392 ..     362     393 .. 0.91

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 3.6e-35
                   EEETTSEEEEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTS.TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHT..T CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
  tRNA-synt_2b   3 ledrndreyiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEks.dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferl..g 95 
                   l+d  d+ey LkP+n+++++ ++  + + s+r LP++++++++++R+E s +++GL+Rvr Fhq+dg++f+ + +++d++++ +  ++ +++ l  g
    CCE28158.1 163 LDDSHDDEYGLKPMNCPGHCLIFASK-IHSYRdLPVRYADFSPLHRNESSgALSGLTRVRRFHQDDGHIFCRPCQVEDEIKKTLDFVKAVYSVLklG 258
                   67889*********************.***666****************999****************************************88436 PP

                   .SCEEEEEEGTTSC..................................BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEE CS
                   xxxxxxxxxxxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  96 lefraiielmsaks..................................adykdkkefeavsesltkgieigtiqklgtrlserlgatvl 150
                   +++r + ++++ ++                                  a+y++k ++ + +   +k+++++tiq + ++l++r+g+++ 
    CCE28158.1 259 VSYR-LALSTRPQDhfigttdewdraedrlkraldasgmdwtinegdgAFYGPKIDIVIRDS-DGKEHQTATIQLD-FQLPKRFGLEYQ 344
                   6644.555555545677789999999******************************977776.9************.********9885 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00016
                   EEEEEEEE.EE.HHHHHHHHHHH CS
                   xxxxxxxx.xx.xxxxxxxxxxx RF
  tRNA-synt_2b 158 svimicaa.ig.veRllsaileq 178
                   +++mi++a +g veRl+++++e+
    CCE28158.1 370 RPVMIHRAvLGsVERLMALLIES 392
                   799*****************995 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   6.3e-10   3.7e-06      25      70 ..     447     492 ..     405     501 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 6.3e-10
                     HHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEE CS
  HGTP_anticodon  25 LraagirvelddsnesigkkireadllgipfavvvGekelekgtvt 70 
                     L+  g+ v++d+s++s+g kirea+  g+  ++vvGe+++++++v+
      CCE28158.1 447 LNTTGLAVHVDYSARSLGAKIREARGNGYGRILVVGEDDVKNRQVS 492
                     44555***********************************999986 PP

>> DUF865  Herpesvirus-7 repeat of unknown function (DUF865)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     1e-05     0.062       7      33 ..     432     460 ..     430     461 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1e-05
      DUF865   7 RQErPrPHNPLTFKPVKTTGTAV..vFSA 33 
                 RQE   P  PL   P  TTG AV  ++SA
  CCE28158.1 432 RQEPGEPGDPLADGPLNTTGLAVhvDYSA 460
                 9********************97336776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3638.50
//
Query:       CCE28159.1  [L=103]
Description: uncharacterized protein CPUR_01633 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-09   37.2   0.0    3.2e-09   36.6   0.0    1.3  1  HLH         Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
       0.12   12.7   0.0       0.14   12.5   0.0    1.1  1  RNA_ligase  RNA ligase


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   3.6e-13   3.2e-09       1      51 [.      29      78 ..      29      80 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 3.6e-13
                HHHHHHHHHHHHHHHHHHHHHHHHHCSTCSTTSS-STHHHHHHHHHHHHHH CS
         HLH  1 rraahnerErrRRdriNsaleeLrellPslppskKlsKaeiLekAveYIkh 51
                ++++h + E++RR+ i++++++L  l+P +  ++  s   +L+++veYI++
  CCE28159.1 29 KKQNHIASEQKRRQAIREGFDRLTFLVP-GLEGQGRSEGLVLKRTVEYIRQ 78
                799*************************.8999999*************98 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.6e-05      0.14      95     160 ..      32      86 ..       7      87 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.6e-05
                 ECE--HHHHHHHHHCCTB..EEEEE.SSHHHHHCCC.................HHHHTC--EEEEEESSSSBETTEBSEEEE CS
  RNA_ligase  95 qrylspdevealakglgtvpvlyegkflaaeellel...............l.lskgnkrEGlVikpeselyknkgraifKv 160
                 +   s ++                                           + l+ ++++EGlV+k + e+ +++ + ++K+
  CCE28159.1  32 NHIASEQK---------------------------RrqairegfdrltflvPgLEGQGRSEGLVLKRTVEYIRQQMQERCKL 86 
                 22222222...........................13455555666665542226788********9999766433777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 734.02
//
Query:       CCE28160.1  [L=282]
Description: related to septum formation maf [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-47  161.7   0.0    1.6e-47  161.5   0.0    1.0  1  Maf       Maf-like protein


Domain annotation for each model (and alignments):
>> Maf  Maf-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.0   8.7e-52   1.6e-47       1     165 [.      55     261 ..      55     262 .. 0.92

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 8.7e-52
                 EEEEE---HHHHHHHHCT-...EEEE------........HHHHHHHHHHHHHHHHH..............TCEEEEEEEEEE....CE---SSHHHHH CS
         Maf   1 kliLASaSprRkelLeqlg...fevvpsdvde........aeelvlrlAeaKaeava..............alvigaDtvvvl....ilgKPkdeeeal 70 
                 +++LASaSprRk+lL+q+g   +e+ ps+  e        + e+v +++++K+ +v+              +lvi+aDtv+v     il+KP++e++++
  CCE28160.1  55 RVVLASASPRRKALLQQIGltdLEITPSTKPEdvdktvygPYEYVAETSRRKCLDVYveclktqlksipdpDLVISADTVIVTrdgrILEKPRSEADHI 153
                 589****************97768888887777777****889***********************9999999*********876666*********** PP

                 HHHHHHTT.SEEEEEEEEEEEE........EEE..EEEEEEEEEE....----HHHHHHHHHCTSGCCSTTS--TTCGGGGGCEEEECS-HHHHHT--H CS
         Maf  71 emLkklsg.rthevvTgvavlk........ekevksfvettevtf....kelsdeeieaYvatgepldkAGaygiqgllglalverieGsysnVvGLPl 156
                 +mLk++++ + h+v+T+v+vl+        ++++++++e+t+v+f    + l+d+ ieaYv+t+e +dkAG+y+iqg++g++l eri+Gs++nV+GLP+
  CCE28160.1 154 RMLKHMRDtEMHRVLTAVTVLApredarhpGYCITTHTEETKVYFfsesNGLPDDVIEAYVKTREGVDKAGGYAIQGIGGMVLAERIDGSVDNVIGLPV 252
                 ******752679*********9********888999*********655556************************************************ PP

                 HHHHHHHCC CS
         Maf 157 aellelLke 165
                 +++l++ ++
  CCE28160.1 253 RQCLSMAEK 261
                 **9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2007.44
//
Query:       CCE28161.1  [L=664]
Description: uncharacterized protein CPUR_01635 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-28   99.2   0.0    6.5e-13   48.6   0.0    2.4  2  Bromodomain    Bromodomain
  ------ inclusion threshold ------
      0.027   12.8  11.7      0.047   12.0  11.7    1.3  1  CDC45          CDC45-like protein
        2.2    8.5  11.9        5.6    7.2  11.9    1.6  1  PTPRCAP        Protein tyrosine phosphatase receptor type C-a
        3.1    7.5   8.3         26    4.5   7.7    2.2  2  TFB6           Subunit 11 of the general transcription factor
        9.6    6.6   9.6         49    4.3   8.2    2.3  2  RNA_pol_Rpc4   RNA polymerase III RPC4
        9.9    5.8   9.1         24    4.6   9.1    1.6  1  FAM176         FAM176 family


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   2.6e-16   7.7e-13      11      83 ..      59     131 ..      47     132 .. 0.91
   2 !   48.6   0.0   2.2e-16   6.5e-13       3      84 .]     266     362 ..     264     362 .. 0.83

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 2.6e-16
                  TTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHH CS
  Bromodomain  11 hklaepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyelae 83 
                  +  a +F++ +++e ++dyy++ + P++L+tI+kkl+++k  +la++e  +k+++ Na+++++  s ++++ae
   CCE28161.1  59 RLVATYFEKLLPKEGNEDYYKRTRLPVSLETIEKKLNDGKLMTLAQLEGYFKRMIANAKEFYPRSSTVFDDAE 131
                  457899****************************************************************997 PP

  == domain 2  score: 48.6 bits;  conditional E-value: 2.2e-16
                  HHHHHBHTTT...CGGGGCSTT..-GCCSTTHHHH.SS---HHHHHHHH..........HTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHHH CS
  Bromodomain   3 kilsellehk...laepFlepv..dpeefpdyyavikkPldLstIkkkl..........esnkYksladfeadlkllfsNarkyngegsviyelaek 84 
                  ki+++ll+ k    + +F+ +v  +p+++ dyy+vi+ Pl+L++++k +            + +ks+ ++e+ +kll+sNa+ yn+egs+i+ela++
   CCE28161.1 266 KIVEDLLRYKkpeYDGYFEPFVhlPPRSLRDYYRVISDPLSLKKLQKEIfgvqgrgdptGISDFKSWNALEERAKLLWSNAYFYNEEGSEIFELAQE 362
                  666666554444233444444488***********************888888888888999********************************985 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  11.7   1.6e-05     0.047     105     220 ..     125     250 ..     112     278 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
       CDC45 105 vvfDDgd.ieeelee....ereayealeeeeesd....eedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrs 194
                 +vfDD + + + l++    ++ ay++  ++  ++    e+ ee+ee++d++e+eee+   +eed+++++ee ++++      ++ + +++e++ +rrrs
  CCE28161.1 125 TVFDDAErVRKALSNymtkNNPAYQTRGYQAVATplppENAEENEEQEDENEDEEED---KEEDKDAEGEEVTQNED----VKQ-KVEEEEEPTSRRRS 215
                 699998854444443322155577777666666655432222222222222222222...22222222222222222....222.23344455555555 PP

       CDC45 195 e.........psakklrrqlkkerrkyeavlekyy 220
                           ps++++      +r+k +++ ++ y
  CCE28161.1 216 IilkragsgrPSRNSVSYADSPRRSKASSRPDHEY 250
                 54555555553333333334444444444444444 PP

>> PTPRCAP  Protein tyrosine phosphatase receptor type C-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  11.9    0.0019       5.6      39      85 ..     166     209 ..     150     231 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0019
     PTPRCAP  39 edgeedeeeEdqedeedeeedsedleggeeeaesqeeeqaeseeage 85 
                 e++ e++e+E++++eed+eed +d eg+e  +++ + +q+ +ee ++
  CCE28161.1 166 EEN-EEQEDENEDEEEDKEED-KDAEGEEVTQNE-DVKQKVEEEEEP 209
                 111.12222333333344433.222222222222.222222222222 PP

>> TFB6  Subunit 11 of the general transcription factor TFIIH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   7.7    0.0088        26     103     150 ..     131     198 ..     127     213 .. 0.47
   2 ?    0.9   0.0      0.11   3.4e+02      47      69 ..     350     372 ..     339     382 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0088
        TFB6 103 ertRvlvvevlereeeeee....................eeedeeededeeeeeeeeeeeeeeedeed 150
                 er R ++ +++++++++ +                    e+ede+ede+e++ee+++ e ee +++ed
  CCE28161.1 131 ERVRKALSNYMTKNNPAYQtrgyqavatplppenaeeneEQEDENEDEEEDKEEDKDAEGEEVTQNED 198
                 66677777777777666666777777777776655433211222222222222222222222222222 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
        TFB6  47 ppspratfklLrkLDkiFasLla 69 
                 + + +++f+l + L k+F+ Ll+
  CCE28161.1 350 NEEGSEIFELAQELEKAFHDLLK 372
                 4455679**************97 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   8.2     0.016        49      12      74 ..     159     214 ..     155     226 .. 0.45
   2 ?    0.7   0.0      0.22   6.5e+02      67     109 ..     374     416 ..     355     433 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.016
  RNA_pol_Rpc4  12 llPslkqkavsaaeddkseaesqsaekakaeeeskaekasgaeaeekkskkksskkkkkkksk 74 
                   +lP+ +      + ++++e+e++++++++++ee+k+++ ++ +++e+ ++k +++++++++  
    CCE28161.1 159 PLPP-E------NAEENEEQEDENEDEEEDKEEDKDAEGEEVTQNEDVKQKVEEEEEPTSRRR 214
                   5666.2......222333333333333344444444444444444444444444444444444 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.22
  RNA_pol_Rpc4  67 kkkkkkskalklkslpeGviGkLlvhkSGkvelrlGgillevs 109
                   + ++ +++a+++ +l+ G+ G+     S +v++++Gg +  v+
    CCE28161.1 374 ARAAVPEPAQPKIKLKVGQSGETPNSSSKRVTIHVGGRTSSVD 416
                   4455566667777888899999999999999999999776665 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   9.1    0.0081        24      60     101 ..     166     197 ..     149     219 .. 0.42

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0081
      FAM176  60 klkeesekasededeeeeeeeedsseseaeeelsefertlsv 101
                 ++      ++e+ede+e+eee+++++++ae e  + +     
  CCE28161.1 166 EE------NEEQEDENEDEEEDKEEDKDAEGEEVTQN----E 197
                 11......12222222222222222222222221111....1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1708  (0.0952647); expected 358.6 (0.02)
Passed bias filter:                      902  (0.0503096); expected 358.6 (0.02)
Passed Vit filter:                       180  (0.0100396); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 4471.68
//
Query:       CCE28162.1  [L=354]
Description: uncharacterized protein CPUR_01636 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.1   0.0       0.29   10.4   0.0    1.2  1  GPI       Glucose-6-phosphate isomerase (GPI)


Domain annotation for each model (and alignments):
>> GPI  Glucose-6-phosphate isomerase (GPI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.6e-05      0.29     104     168 ..     279     343 ..     257     352 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 1.6e-05
         GPI 104 lkvddvivvevkartvvivPPnygHvsinigeedLvmanlvpkdagqdYdviakarGmaayiiee 168
                 l ++d  +  +++++vv  PP  g v+i    e L    +++  ++  Y v++k  G+  + +e 
  CCE28162.1 279 LALNDATTTCMRQWEVVKDPPIRGSVTIDGVVELLAEDMVMYVSVSAWYHVVQKEFGAMLVKVER 343
                 678999999********************999999999999****************99988854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2877.21
//
Query:       CCE28163.1  [L=379]
Description: uncharacterized protein CPUR_01637 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-36  122.3   2.9    8.3e-36  122.3   2.9    1.7  2  DUF3844   Domain of unknown function (DUF3844)


Domain annotation for each model (and alignments):
>> DUF3844  Domain of unknown function (DUF3844)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.44   7.8e+03      30      43 ..     163     176 ..     151     191 .. 0.56
   2 !  122.3   2.9   4.6e-40   8.3e-36       1     105 []     270     373 ..     270     373 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.44
     DUF3844  30 egeacfvCkCeatv 43 
                  + +c+  k +a  
  CCE28163.1 163 PKGDCWNGKSSAVA 176
                 35566665555444 PP

  == domain 2  score: 122.3 bits;  conditional E-value: 4.6e-40
     DUF3844   1 CfeseeacekatnsCsghGecvkklkskee...geacfvCkCeatvekkkedkkkttkwgGeaCekkDvsvefvllalttvalvvlvilsislLfsvGe 96 
                 C+++++ac+ at++C+ghG+c++k++s +    g++cf+C+C+at e+     k  ++wgG++C k+Dvsv+f+l+a++t+++v ++++si+lL+svGe
  CCE28163.1 270 CYDTASACNVATRNCTGHGTCKDKYASGDGakaGASCFACHCQATREEG----KGVKHWGGPSCAKQDVSVPFWLFAGFTLVMVSILSMSIGLLYSVGE 364
                 *************************965545569*********996655....69******************************************** PP

     DUF3844  97 eeLpgvlga 105
                 e+Lpgv+ga
  CCE28163.1 365 EKLPGVIGA 373
                 *******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2803.83
//
Query:       CCE28164.1  [L=743]
Description: uncharacterized protein CPUR_01638 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.065   12.2   0.0       0.11   11.5   0.0    1.4  1  Fungal_trans  Fungal specific transcription factor domain
       0.11   12.9   0.0       0.26   11.6   0.0    1.6  1  DUF3713       Protein of unknown function (DUF3713)
       0.33   11.1  17.5      0.052   13.7  11.7    2.1  2  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
          3    7.9   6.5        5.9    7.0   6.5    1.4  1  CX9C          CHCH-CHCH-like Cx9C, IMS import disulfide relay


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.5e-05      0.11      81     205 ..     233     362 ..     112     405 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
  Fungal_trans  81 hedfsspssslwilq.sLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkks....lwklweeeaesrrRlwwaaFylDktialklGr 172
                   h  ++s +s l+ lq  L+++ +    +   a+  +++++a +++ +lgL+  p   +  +     ++ ++      rR  +++++l + +++ ++r
    CCE28164.1 233 HVLMRSARS-LELLQgILVMIGWHQYHCLMHAQMNNLLSLAASMVSDLGLNYPPGIREQARlmvaRPDEPAGRTNDERRALLGVWFLTCNVSVSFNR 328
                   444455566.*****777788888888888*************************999888886655555555555889999999999999999999 PP

  Fungal_trans 173 pp.llddsqinlpLPcddddlwesddaseetlve 205
                      + + + i+ +L   +++ +  +d++ ++lv+
    CCE28164.1 329 IDsMTFTQYIQESLNVLENETEYESDVTLVFLVR 362
                   8877888888877776666655555555555555 PP

>> DUF3713  Protein of unknown function (DUF3713)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.9e-05      0.26      29      83 ..      57     111 ..      45     138 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.9e-05
     DUF3713  29 nklKtkdikvkklkdk.kekvetkakslvekLkvttapsstySqvvllkvkndnkp 83 
                 +++  +  k  ++k   ++++e+ ++ lv+ L++ ++  ++ S+ ++l++ +d   
  CCE28164.1  57 AQI-HRPRKKRQVKPSrTAQIEERLNGLVNLLQASGEFTNNHSNHTSLNTLSDAAV 111
                 455.3334578899998*********************************999543 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7  11.7   1.2e-05     0.052       2      37 ..      23      61 ..      22      65 .. 0.89
   2 ?    0.2   0.3      0.18   8.2e+02      20      27 ..     594     601 ..     585     610 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
                S-HHHHHCT---STSSSS....-HHHHHCTHHHCCCCTCC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPa....CsnCkklnleCtfysess 37
                aC  C   K KC + +P     C +C++l +eCt  +  +
  CCE28164.1 23 ACAACAMAKAKCIRSNPDpnakCDRCQRLLKECT-AQIHR 61
                9*************999999**************.66554 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.18
                 -HHHHHCT CS
     Zn_clus  20 CsnCkkln 27 
                 C +C+++n
  CCE28164.1 594 CERCEQVN 601
                 99999988 PP

>> CX9C  CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.5    0.0013       5.9      16      41 ..      32      57 ..      23      59 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0013
        CX9C 16 hkCvssnqswpekCkeqkkeLakCik 41
                 kC++sn + ++kC   ++ L +C++
  CCE28164.1 32 AKCIRSNPDPNAKCDRCQRLLKECTA 57
                59*****99***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4982.80
//
Query:       CCE28165.1  [L=86]
Description: probable small nuclear ribonucleoprotein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-21   74.8   0.7    3.6e-21   74.6   0.7    1.0  1  LSM       LSM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.7     2e-25   3.6e-21       2      66 ..       7      70 ..       6      71 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 2e-25
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEGGGEEEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRGnnivlis 66
                 lkk+++k++ v+l++ r+++G+L+g+D f+N+vL++++e ++++ ek k+g+v+iRGn++v+++
  CCE28165.1  7 ELKKYLEKRIFVQLNGSRKVIGVLRGYDVFLNIVLDEAVEEKDGG-EKVKIGMVVIRGNSVVMME 70
                69*******************************************.****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 686.10
//
Query:       CCE28166.1  [L=469]
Description: uncharacterized protein CPUR_01640 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.84    9.2   4.1       0.22   11.1   0.8    1.7  2  CENP-K       Centromere-associated protein K
        2.8    7.2   7.6       0.48    9.7   3.7    1.6  2  FAM76        FAM76 protein
        3.7    7.4   6.1         16    5.3   0.6    2.6  2  DivIC        Septum formation initiator


Domain annotation for each model (and alignments):
>> CENP-K  Centromere-associated protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1         1   6.1e+03     106     131 ..     232     257 ..     212     262 .. 0.64
   2 ?   11.1   0.8   3.7e-05      0.22      85     141 ..     367     422 ..     347     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1
      CENP-K 106 nkklkedLkrEqewleeqqeilesLk 131
                 +k+ ++ L +Eq+ l+ + +++++++
  CCE28166.1 232 KKERRARLAQEQDVLSLEDDDTTTFS 257
                 34455666666666666666655555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 3.7e-05
      CENP-K  85 keelqklksqLelvlsiiqsknkklkedLkrEqewleeqqeilesLkektkelkkqv 141
                  e +++l++ L+ + s +q+k  +l e+L++E++ +++++  ++sL   t++  ++v
  CCE28166.1 367 SECMARLQTTLKAMESDLQAKTSHL-EHLRKERQGIDKRKAEVQSLLDETGKKYQEV 422
                 456789999**************99.58******************99887755444 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.39   2.3e+03     219     246 ..     224     251 ..     157     268 .. 0.54
   2 ?    9.7   3.7     8e-05      0.48     157     275 ..     295     420 ..     282     436 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.39
       FAM76 219 vavtqLkeeiaslkkqleqkdqellekd 246
                    ++++e+ +++ +  +++d+  le d
  CCE28166.1 224 FSEAEIREKKERRARLAQEQDVLSLEDD 251
                 3334444444444444444444444443 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 8e-05
       FAM76 157 kkskkskekskekkaskkkskkhkkrss....rlevskleeeklaeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkite 251
                 +++kk+++++ e ++  + +++ ++++s    r+   +++++   +  ++ ++ +++  ++ s ++  +  L e +a+l+ +l+  +++l +k  ++ +
  CCE28166.1 295 ERRKKDRQQMAELITAAEGHSSDDSSDSdaerRIAYEAAQSRAGLDGLKKPRQGTSQDLLQISPKITPLPSLSECMARLQTTLKAMESDLQAKTSHLEH 393
                 111222222222222222222221111122223333333333334444444444456678999************************************ PP

       FAM76 252 lkaellekekel...reklkelekeak 275
                 l+ e +  +k+    ++ l e+ k+++
  CCE28166.1 394 LRKERQGIDKRKaevQSLLDETGKKYQ 420
                 **9988665544000333333333333 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.5    0.0065        39      30      52 ..     226     247 ..     223     260 .. 0.80
   2 ?    5.3   0.6    0.0028        16      15      49 ..     373     407 ..     369     420 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0065
                 HHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC  30 qaelaklkaeneeLeaevkdLks 52 
                 +ae+ ++k+++++L++e + L s
  CCE28166.1 226 EAEIREKKERRARLAQEQDVL-S 247
                 789999999999999999988.4 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0028
                 XXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       DivIC  15 gllaykqlkqeiaalqaelaklkaeneeLeaevkd 49 
                  + ++k+++++++a++ +l+ l++e++  +++ ++
  CCE28166.1 373 LQTTLKAMESDLQAKTSHLEHLRKERQGIDKRKAE 407
                 577999*******************9987766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1076  (0.0600145); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 3350.95
//
Query:       CCE28167.1  [L=579]
Description: related to stress-induced protein STI1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-39  131.9  35.8    3.2e-07   29.9   0.5    9.8 10  TPR_1        Tetratricopeptide repeat
    7.9e-37  125.0  21.0    2.4e-20   72.2   5.0    2.9  2  STI1         STI1 domain
    7.4e-31  103.8  35.6    2.3e-05   24.2   0.1    9.9 10  TPR_2        Tetratricopeptide repeat
    2.2e-15   56.0  22.1     0.0011   18.6   0.8    7.5  8  TPR_11       TPR repeat
    8.2e-14   52.0   6.0    0.00045   20.8   0.2    5.6  6  TPR_16       Tetratricopeptide repeat
    8.6e-14   51.6  16.1    2.2e-11   43.8   0.5    5.6  5  TPR_12       Tetratricopeptide repeat
    5.2e-13   48.1  32.2    8.4e-05   22.5   0.3    8.1  8  TPR_8        Tetratricopeptide repeat
    6.1e-13   49.1   9.3      0.012   16.1   0.0    6.6  6  TPR_19       Tetratricopeptide repeat
    2.3e-12   46.0   5.4    0.00021   21.1   0.0    6.5  6  TPR_7        Tetratricopeptide repeat
    2.7e-12   46.4   8.1       0.44   11.5   0.0    8.3  8  TPR_14       Tetratricopeptide repeat
    9.6e-10   38.5   0.2      0.011   15.9   0.0    4.8  4  TPR_9        Tetratricopeptide repeat
    3.4e-08   33.3   6.1       0.99    9.9   0.2    7.5  7  TPR_17       Tetratricopeptide repeat
    6.6e-05   22.6  13.8      0.058   13.3   0.1    6.3  7  TPR_10       Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   16.0   9.8      0.096   12.9   0.9    3.9  4  ANAPC3       Anaphase-promoting complex, cyclosome, subunit 3
      0.033   14.8  17.8        1.3    9.8   0.0    6.8  6  TPR_6        Tetratricopeptide repeat
        0.1   12.7  14.4          5    7.3   0.1    6.0  7  MIT          MIT (microtubule interacting and transport) doma
       0.11   11.9   4.1        2.4    7.7   0.1    3.5  3  SHNi-TPR     SHNi-TPR
       0.57   10.5   2.2         46    4.6   0.0    4.2  4  PPR          PPR repeat
        1.1    9.3  15.5         23    5.1   0.2    5.5  5  TPR_3        Tetratricopeptide repeat
        4.3    7.1  10.4        3.1    7.5   0.2    3.9  4  TOM20_plant  Plant specific mitochondrial import receptor sub


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.4   4.4e-07    0.0004       1      34 []       4      37 ..       4      37 .. 0.94
   2 !    8.8   0.0    0.0017       1.5       4      33 ..      41      70 ..      39      70 .. 0.90
   3 !   10.2   0.1    0.0006      0.54       1      33 [.      72     104 ..      72     105 .. 0.94
   4 ?   -2.1   0.8       4.6   4.1e+03      10      22 ..     242     254 ..     241     254 .. 0.86
   5 !   15.3   0.3   1.5e-05     0.013       7      27 ..     258     278 ..     255     278 .. 0.93
   6 !   29.9   0.5   3.6e-10   3.2e-07       4      29 ..     288     313 ..     285     314 .. 0.95
   7 !   27.0   0.1   2.8e-09   2.5e-06       1      29 [.     326     354 ..     326     358 .. 0.94
   8 ?    4.8   0.0      0.03        27       7      33 ..     392     418 ..     390     419 .. 0.90
   9 !   18.4   0.0   1.5e-06    0.0013       1      34 []     420     453 ..     420     453 .. 0.97
  10 !   17.7   0.2   2.5e-06    0.0022       2      31 ..     455     484 ..     454     487 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.4e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALelnPnn 34
                a+ l+ lGn     +++d A++ + +A+ l+P+n
  CCE28167.1  4 ADELKALGNKAIAEKNFDAAIDNFTQAIALQPEN 37
                677899**************************97 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0017
                HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  4 lynlGnayfklgkydeAleyyekALelnPn 33
                + n+ +ay +++++d Al++ ek  +l P+
  CCE28167.1 41 YSNRSAAYASKKEWDSALQDAEKTTQLKPD 70
                6666689********************997 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0006
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 ak + ++G+a++ +g++  A ++ye+ L+++ +
  CCE28167.1  72 AKGWGRKGAALHGKGDLVGANDAYEQGLKHDAS 104
                 799**************************9966 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 4.6
                 HHHHTT-HHHHHH CS
       TPR_1  10 ayfklgkydeAle 22 
                 a+ k++k +eA++
  CCE28167.1 242 ALEKKKKKEEAEK 254
                 78999******86 PP

  == domain 5  score: 15.3 bits;  conditional E-value: 1.5e-05
                 HHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekA 27 
                 lG   +k+ ++deA+e+y+kA
  CCE28167.1 258 LGTENYKKRQFDEAIEHYSKA 278
                 89999***************9 PP

  == domain 6  score: 29.9 bits;  conditional E-value: 3.6e-10
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALe 29 
                 l+nlG+ayf++g+y++++e++ kA+e
  CCE28167.1 288 LNNLGAAYFEKGDYEKCIEACTKAVE 313
                 8***********************97 PP

  == domain 7  score: 27.0 bits;  conditional E-value: 2.8e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALe 29 
                 ak++ ++G ay k++++++A+e+y++ L+
  CCE28167.1 326 AKSYARIGSAYEKQENFEKAVEFYNRSLT 354
                 799***********************996 PP

  == domain 8  score: 4.8 bits;  conditional E-value: 0.03
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 lGn  fk +++  A+++y +  +  P+
  CCE28167.1 392 LGNKKFKENDFPGAVAAYTEMTKRAPE 418
                 89999**************98888887 PP

  == domain 9  score: 18.4 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 a+ + n+++a+ kl ++  A+e+++ A++ +P++
  CCE28167.1 420 ARGYSNRAAAFVKLFEFPSAVEDCNIAIQKDPKF 453
                 789*****************************96 PP

  == domain 10  score: 17.7 bits;  conditional E-value: 2.5e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALeln 31 
                 +a+ ++++ayf + ky e+++++ +A +++
  CCE28167.1 455 RAYIRKAQAYFGMRKYSECVDACAEAQQVD 484
                 79************************9987 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   5.0   2.7e-23   2.4e-20       1      55 []     140     194 ..     140     194 .. 0.99
   2 !   57.7   8.0     9e-19   8.1e-16       3      55 .]     518     570 ..     516     570 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 2.7e-23
        STI1   1 dpelfaklaanPetrellsDPefvakleeiqsNPqalqqymsDprimtvlsvLmg 55 
                 dp++++kla+nP+t+ +l+DP+f+akl+++q+NP + q  +sDpr+ +vl+v+mg
  CCE28167.1 140 DPNMIQKLANNPKTSGYLADPSFMAKLQQMQRNPGMTQDLFSDPRMIQVLGVMMG 194
                 8*****************************************************8 PP

  == domain 2  score: 57.7 bits;  conditional E-value: 9e-19
        STI1   3 elfaklaanPetrellsDPefvakleeiqsNPqalqqymsDprimtvlsvLmg 55 
                 +  ++l+++Pe++ +++DP ++++l++ qsNP+alq +m++p +  ++++Lm+
  CCE28167.1 518 QTRERLQQDPEIMSIMQDPVMQSILQQAQSNPMALQDHMKNPGVKSKIQKLMA 570
                 6679************************************************5 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.3   1.4e-06    0.0013       1      34 []       4      37 ..       4      37 .. 0.94
   2 !   12.0   0.0   0.00019      0.17       3      33 ..      40      70 ..      38      71 .. 0.94
   3 !   10.2   0.1   0.00073      0.65       1      31 [.      72     102 ..      72     105 .. 0.93
   4 ?   -1.4   0.5         4   3.6e+03      10      22 ..     242     254 ..     241     255 .. 0.87
   5 !   11.7   0.3   0.00024      0.22       7      27 ..     258     278 ..     256     278 .. 0.91
   6 !   24.2   0.1   2.5e-08   2.3e-05       3      29 ..     287     313 ..     285     315 .. 0.94
   7 !   19.7   0.1   6.8e-07   0.00061       1      29 [.     326     354 ..     326     358 .. 0.92
   8 ?    6.5   0.1     0.011        10       2      34 .]     387     419 ..     386     419 .. 0.89
   9 !    9.8   0.0     0.001       0.9       1      33 [.     420     452 ..     420     453 .. 0.95
  10 !   11.1   0.2   0.00038      0.34       2      30 ..     455     483 ..     454     486 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.4e-06
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldPnn 34
                a+ l +lG+ +++ ++++ A++ f +A++l P+n
  CCE28167.1  4 ADELKALGNKAIAEKNFDAAIDNFTQAIALQPEN 37
                567899**************************97 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00019
       TPR_2  3 alynlGlayyklgdyeeAleafekAleldPn 33
                ++ n+  ay+ +++++ Al++ ek  +l P+
  CCE28167.1 40 LYSNRSAAYASKKEWDSALQDAEKTTQLKPD 70
                799*************************998 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00073
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a+++ + G a+  +gd+  A +a+e+ l++d
  CCE28167.1  72 AKGWGRKGAALHGKGDLVGANDAYEQGLKHD 102
                 68999***********************998 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 4
       TPR_2  10 ayyklgdyeeAle 22 
                 a++k+++ eeA++
  CCE28167.1 242 ALEKKKKKEEAEK 254
                 78999******87 PP

  == domain 5  score: 11.7 bits;  conditional E-value: 0.00024
       TPR_2   7 lGlayyklgdyeeAleafekA 27 
                 lG   yk+ +++eA+e++ kA
  CCE28167.1 258 LGTENYKKRQFDEAIEHYSKA 278
                 78889**************98 PP

  == domain 6  score: 24.2 bits;  conditional E-value: 2.5e-08
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                 +l+nlG ay+++gdye+++ea+ kA+e
  CCE28167.1 287 YLNNLGAAYFEKGDYEKCIEACTKAVE 313
                 79***********************98 PP

  == domain 7  score: 19.7 bits;  conditional E-value: 6.8e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAle 29 
                 a+ + ++G ay+k+ ++e+A+e+++++l 
  CCE28167.1 326 AKSYARIGSAYEKQENFEKAVEFYNRSLT 354
                 67899*********************985 PP

  == domain 8  score: 6.5 bits;  conditional E-value: 0.011
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 e   +lG+  +k +d+  A++a+ +  + +P++
  CCE28167.1 387 EEARELGNKKFKENDFPGAVAAYTEMTKRAPED 419
                 5567899999*****************999986 PP

  == domain 9  score: 9.8 bits;  conditional E-value: 0.001
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a+++ n++ a  kl ++  A+e+++ A++ dP+
  CCE28167.1 420 ARGYSNRAAAFVKLFEFPSAVEDCNIAIQKDPK 452
                 6799****************************7 PP

  == domain 10  score: 11.1 bits;  conditional E-value: 0.00038
       TPR_2   2 ealynlGlayyklgdyeeAleafekAlel 30 
                 +a+ + ++ay+ + +y e+++a+ +A + 
  CCE28167.1 455 RAYIRKAQAYFGMRKYSECVDACAEAQQV 483
                 699**********************9875 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.8   1.3e-06    0.0011       2      40 ..      12      50 ..      11      52 .. 0.89
   2 ?    3.5   0.1     0.063        56       3      42 .]      47      86 ..      46      86 .. 0.92
   3 ?    5.2   0.2     0.018        16       2      34 ..      80     112 ..      79     118 .. 0.85
   4 !   15.9   1.1   8.7e-06    0.0078       5      42 .]     263     299 ..     259     299 .. 0.90
   5 !    6.8   0.1    0.0058       5.2       1      16 [.     292     307 ..     292     313 .. 0.82
   6 ?    3.7   0.1     0.054        49       1      21 [.     333     353 ..     333     354 .. 0.89
   7 !   14.5   0.0   2.4e-05     0.022       1      41 [.     393     433 ..     393     433 .. 0.96
   8 !    7.1   0.0    0.0049       4.4      12      40 ..     438     466 ..     435     467 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.3e-06
      TPR_11  2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40
                +   +  ++++Ai ++ +A++l P+n  +y+n+ +ay+ 
  CCE28167.1 12 NKAIAEKNFDAAIDNFTQAIALQPENHILYSNRSAAYAS 50
                555677899**************************9975 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.063
      TPR_11  3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42
                ay ++ +++ A+++ +k  +l+Pd a  +   G+a++ +G
  CCE28167.1 47 AYASKKEWDSALQDAEKTTQLKPDWAKGWGRKGAALHGKG 86
                799*********************9999999999999877 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.018
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynL 34 
                  a++ +G++ +A  aY++ lk d +na + ++L
  CCE28167.1  80 AALHGKGDLVGANDAYEQGLKHDASNAQLKSGL 112
                 577889*********************876655 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 8.7e-06
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 y++ +++eAie+Y+kA + + ++ + ++nLG+ay+++G
  CCE28167.1 263 YKKRQFDEAIEHYSKAWD-TFQDITYLNNLGAAYFEKG 299
                 77889***********98.6789*************98 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0058
      TPR_11   1 GdayyeqGkyeeAiea 16 
                 G ay+e+G+ye+ iea
  CCE28167.1 292 GAAYFEKGDYEKCIEA 307
                 679********99987 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.054
      TPR_11   1 GdayyeqGkyeeAieaYkkAl 21 
                 G ay +q ++e+A+e Y++ l
  CCE28167.1 333 GSAYEKQENFEKAVEFYNRSL 353
                 789999***********9865 PP

  == domain 7  score: 14.5 bits;  conditional E-value: 2.4e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 G+  ++ +++++A++aY +  k  P++a+ y+n+++a+ k+
  CCE28167.1 393 GNKKFKENDFPGAVAAYTEMTKRAPEDARGYSNRAAAFVKL 433
                 8999*********************************9885 PP

  == domain 8  score: 7.1 bits;  conditional E-value: 0.0049
      TPR_11  12 eAieaYkkAlkldPdnaeayynLGlayyk 40 
                  A+e+ + A++ dP++ +ay   ++ay+ 
  CCE28167.1 438 SAVEDCNIAIQKDPKFIRAYIRKAQAYFG 466
                 56666677*******************95 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2     5e-07   0.00045       2      56 ..       9      61 ..       8      72 .. 0.89
   2 ?    0.5   0.1       1.1   9.9e+02      37      66 ..      75     104 ..      69     106 .. 0.74
   3 ?    0.7   0.1      0.98   8.8e+02      11      34 ..      86     106 ..      77     116 .. 0.58
   4 !    9.8   0.0    0.0014       1.3       2      62 ..     257     313 ..     256     321 .. 0.88
   5 ?    6.5   0.0     0.015        13      25      61 ..     320     353 ..     310     360 .. 0.79
   6 !   12.0   0.0   0.00029      0.26       3      65 ..     392     451 ..     390     452 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5e-07
      TPR_16  2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.al 56
                al++ a++ +++d+A+  +++a++++   P+++  + ++  a++ +++++ A+ ++
  CCE28167.1  9 ALGNKAIAEKNFDAAIDNFTQAIALQ---PENHILYSNRSAAYASKKEWDSALqDA 61
                688889999*****************...***********************9444 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.1
      TPR_16  37 llllgdaalrqgrlaeAaalyraalraapd 66 
                 +  +g a+  +g+l +A ++y+  l+++++
  CCE28167.1  75 WGRKGAALHGKGDLVGANDAYEQGLKHDAS 104
                 566788888889999988888777776665 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.98
      TPR_16  11 gdyddAaaaleaalkrdpssPdaa 34 
                 gd   A  a+e+ lk d     +a
  CCE28167.1  86 GDLVGANDAYEQGLKHD---ASNA 106
                 55556666777777777...4444 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.0014
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 al+++ ++ +++d+A++ +  a + +     +   l++lg a++++g++++ ++++ +a++
  CCE28167.1 257 ALGTENYKKRQFDEAIEHYSKAWDTF---Q-DITYLNNLGAAYFEKGDYEKCIEACTKAVE 313
                 5788889999**************99...6.79*****************98888888875 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.015
      TPR_16  25 krdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 +++    + a ++   g a+ +q ++++A+++y++ l
  CCE28167.1 320 ADF---KLIAKSYARIGSAYEKQENFEKAVEFYNRSL 353
                 455...666788889999***************9988 PP

  == domain 6  score: 12.0 bits;  conditional E-value: 0.00029
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 l++  ++ +d++ A+aa+++ +kr+   P++a+ + +++ a+ ++ +++ A++ ++ a++ +p
  CCE28167.1 392 LGNKKFKENDFPGAVAAYTEMTKRA---PEDARGYSNRAAAFVKLFEFPSAVEDCNIAIQKDP 451
                 566678899****************...***********999999999999988888887777 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.3    0.0022       1.9      14      75 ..      15      68 ..       5      70 .. 0.81
   2 ?    2.7   0.3      0.17   1.5e+02       5      32 ..      40      67 ..      37     103 .. 0.67
   3 ?    4.5   0.1     0.047        42      14      29 ..     263     278 ..     250     287 .. 0.71
   4 !   43.8   0.5   2.5e-14   2.2e-11       5      72 ..     287     353 ..     282     354 .. 0.95
   5 ?    1.2   0.2      0.51   4.6e+02       4      33 ..     455     484 ..     453     495 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0022
      TPR_12 14 rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75
                 + +++d A++++ +a++++   + ++h    + + n + +y   ++++ Al+  e++++++
  CCE28167.1 15 IAEKNFDAAIDNFTQAIALQ---P-ENH----ILYSNRSAAYASKKEWDSALQDAEKTTQLK 68
                56799999999999999999...3.456....57999999999999******9999998876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.17
      TPR_12  5 alnnlaavlrrlgrydeAlellekalei 32
                +++n+ a+++  +++d Al+  ek  ++
  CCE28167.1 40 LYSNRSAAYASKKEWDSALQDAEKTTQL 67
                5667777777777777777777776554 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.047
      TPR_12  14 rrlgrydeAlelleka 29 
                 ++  ++deA+e++ ka
  CCE28167.1 263 YKKRQFDEAIEHYSKA 278
                 4556777888887777 PP

  == domain 4  score: 43.8 bits;  conditional E-value: 2.5e-14
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                  lnnl+a++++ g+y++++e + ka+e  r+++ + + l a ++  +g +y++++++e+A+e+++++l
  CCE28167.1 287 YLNNLGAAYFEKGDYEKCIEACTKAVEEGRAIYADFK-LIAKSYARIGSAYEKQENFEKAVEFYNRSL 353
                 4679********************************9.*****************************9 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.51
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleia 33 
                 +a+ + a++++ + +y e+ + + +a ++ 
  CCE28167.1 455 RAYIRKAQAYFGMRKYSECVDACAEAQQVD 484
                 57889999*************999998776 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0045         4      12      34 .]      15      37 ..       9      37 .. 0.88
   2 ?   -0.6   0.1       2.3   2.1e+03       4      33 ..      41      70 ..      40      70 .. 0.87
   3 ?    1.0   0.0      0.72   6.4e+02       1      29 [.      72     100 ..      72     105 .. 0.85
   4 ?   -1.0   1.1       3.1   2.8e+03      10      22 ..     242     254 ..     241     255 .. 0.87
   5 ?    4.0   0.1     0.079        71       8      27 ..     259     278 ..     257     279 .. 0.84
   6 !   20.9   0.3   2.9e-07   0.00026       3      29 ..     287     313 ..     285     314 .. 0.94
   7 !   22.5   0.3   9.4e-08   8.4e-05       1      28 [.     326     353 ..     326     355 .. 0.95
   8 !    9.8   0.2    0.0011      0.96       2      29 ..     455     482 ..     454     484 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0045
                HHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8 12 lklgdyeeAkeyyekaleldpdn 34
                +  +++++A+  + +a+ l+p+n
  CCE28167.1 15 IAEKNFDAAIDNFTQAIALQPEN 37
                5679*****************86 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.3
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  4 yynlgsiylklgdyeeAkeyyekaleldpd 33
                y n + +y ++++ ++A +  ek ++l+pd
  CCE28167.1 41 YSNRSAAYASKKEWDSALQDAEKTTQLKPD 70
                667888999999999*****9999999986 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.72
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekale 29 
                 a+ + ++g +++ +gd+  A  +ye+ l+
  CCE28167.1  72 AKGWGRKGAALHGKGDLVGANDAYEQGLK 100
                 67899***********9888888888876 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 3.1
                 HHHHTT-HHHHHH CS
       TPR_8  10 iylklgdyeeAke 22 
                 +++k++++eeA++
  CCE28167.1 242 ALEKKKKKEEAEK 254
                 6899*******87 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.079
                 HHHHHHTT-HHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyeka 27 
                 g    k+ +++eA+e y ka
  CCE28167.1 259 GTENYKKRQFDEAIEHYSKA 278
                 55667899*********998 PP

  == domain 6  score: 20.9 bits;  conditional E-value: 2.9e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 +++nlg +y+++gdye+ +e++ ka+e
  CCE28167.1 287 YLNNLGAAYFEKGDYEKCIEACTKAVE 313
                 789**********************97 PP

  == domain 7  score: 22.5 bits;  conditional E-value: 9.4e-08
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekal 28 
                 a++y ++gs+y+k++++e+A+e+y++ l
  CCE28167.1 326 AKSYARIGSAYEKQENFEKAVEFYNRSL 353
                 789**********************987 PP

  == domain 8  score: 9.8 bits;  conditional E-value: 0.0011
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 +ay +++++y+ + +y e + ++ +a +
  CCE28167.1 455 RAYIRKAQAYFGMRKYSECVDACAEAQQ 482
                 89******************99999876 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.3   0.00046      0.41       1      46 [.      14      59 ..      14      75 .. 0.89
   2 !    6.9   0.2    0.0099       8.9       3      37 ..      84     118 ..      82     123 .. 0.88
   3 !   16.1   0.0   1.3e-05     0.012       4      56 ..     265     316 ..     262     327 .. 0.86
   4 ?    3.4   0.0      0.12   1.1e+02      33      61 ..     334     361 ..     326     367 .. 0.79
   5 ?    4.3   0.0     0.064        58       2      44 ..     397     439 ..     396     441 .. 0.82
   6 !    6.9   0.0      0.01       8.9      17      54 ..     446     483 ..     435     494 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00046
      TPR_19  1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46
                ++ae+++++A++ ++qa++  p+n  +  +   a+ + +++d A +
  CCE28167.1 14 AIAEKNFDAAIDNFTQAIALQPENHILYSNRSAAYASKKEWDSALQ 59
                689**********************999999999999999999986 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0099
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAealla 37 
                   gd+  A +++eq l++d+ na ++ +LA +  a
  CCE28167.1  84 GKGDLVGANDAYEQGLKHDASNAQLKSGLASVEKA 118
                 579**************************977655 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 1.3e-05
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                   +++eA++++++a++   +  ++   L  a+++ g++++ ++++ ++ ee +
  CCE28167.1 265 KRQFDEAIEHYSKAWDTFQDITYLNN-LGAAYFEKGDYEKCIEACTKAVEEGR 316
                 679***********999888888888.****************9999988866 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.12
      TPR_19  33 eallalgqldeAealLdalpeedpddary 61 
                  a+ ++ ++++A +  ++ + e +  +++
  CCE28167.1 334 SAYEKQENFEKAVEFYNRSLTEHRT-PDV 361
                 5899999999999999999988887.555 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.064
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeA 44 
                 ++e+d+  A+a+++++ + +p++a+   + A a ++l ++  A
  CCE28167.1 397 FKENDFPGAVAAYTEMTKRAPEDARGYSNRAAAFVKLFEFPSA 439
                 5799*******************99888888777777666555 PP

  == domain 6  score: 6.9 bits;  conditional E-value: 0.01
      TPR_19  17 alqedpknaearllLAeallalgqldeAealLdalpee 54 
                 a+q+dpk  +a ++ A+a++ +  + e  ++++++++ 
  CCE28167.1 446 AIQKDPKFIRAYIRKAQAYFGMRKYSECVDACAEAQQV 483
                 789************************99999888765 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.11        97      14      33 ..      19      36 ..       7      39 .. 0.83
   2 ?    1.5   0.1      0.41   3.7e+02      13      24 ..     266     277 ..     263     278 .. 0.82
   3 !   14.0   0.1   4.2e-05     0.038       2      29 ..     288     313 ..     286     320 .. 0.89
   4 !   21.1   0.0   2.3e-07   0.00021       1      32 [.     328     359 ..     328     363 .. 0.88
   5 ?    1.3   0.0      0.48   4.3e+02      11      35 ..     398     420 ..     392     421 .. 0.89
   6 ?   -1.7   0.0       4.6   4.1e+03       2      20 ..     423     441 ..     423     451 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.11
       TPR_7 14 dyeeAielyeqsLaltkdpe 33
                +++ Ai+ ++q  a++ +pe
  CCE28167.1 19 NFDAAIDNFTQ--AIALQPE 36
                89*********..7777766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.41
       TPR_7  13 GdyeeAielyeq 24 
                 ++++eAie+y +
  CCE28167.1 266 RQFDEAIEHYSK 277
                 78*******965 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 4.2e-05
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLalt 29 
                 L+nL+ +y++ Gdye+ ie +++  a++
  CCE28167.1 288 LNNLGAAYFEKGDYEKCIEACTK--AVE 313
                 79*****************9999..665 PP

  == domain 4  score: 21.1 bits;  conditional E-value: 2.3e-07
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 ++ +++++y+++ ++e+A+e+y +sL  ++ p
  CCE28167.1 328 SYARIGSAYEKQENFEKAVEFYNRSLTEHRTP 359
                 6899********************99777666 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.48
       TPR_7  11 rlGdyeeAielyeqsLaltkdpeda 35 
                 +++d+  A+  y++   + ++peda
  CCE28167.1 398 KENDFPGAVAAYTE--MTKRAPEDA 420
                 689***********..999999987 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 4.6
       TPR_7   2 LlnLarlysrlGdyeeAie 20 
                 ++n a ++++l ++  A+e
  CCE28167.1 423 YSNRAAAFVKLFEFPSAVE 441
                 6789999******999998 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.017        16       4      35 ..       7      38 ..       4      47 .. 0.84
   2 ?    0.6   0.1       1.6   1.4e+03       8      42 ..      45      79 ..      40      81 .. 0.84
   3 ?    2.7   0.0      0.34     3e+02       7      42 ..      78     113 ..      72     115 .. 0.83
   4 ?    3.0   0.0      0.26   2.3e+02      13      29 ..     264     280 ..     255     289 .. 0.79
   5 ?    5.3   0.0     0.049        44       7      30 ..     291     314 ..     286     321 .. 0.91
   6 !   11.5   0.0   0.00049      0.44       3      35 ..     328     360 ..     326     366 .. 0.83
   7 ?    5.2   0.1     0.053        48      14      38 ..     399     423 ..     386     429 .. 0.82
   8 !    8.6   0.0    0.0042       3.7       7      43 ..     426     462 ..     420     463 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.017
      TPR_14  4 llalaeallalGdpdeAiallrralalaPdda 35
                l+al+    a  ++d+Ai+ + +a+al+P++ 
  CCE28167.1  7 LKALGNKAIAEKNFDAAIDNFTQAIALQPENH 38
                566777778899*****************986 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.6
      TPR_14  8 aeallalGdpdeAiallrralalaPddaeawllla 42
                 +a++   ++d A++ +++  +l Pd a  w + +
  CCE28167.1 45 SAAYASKKEWDSALQDAEKTTQLKPDWAKGWGRKG 79
                578999999*****999999999999988887765 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.34
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawllla 42 
                  ++al   Gd+ +A +++++ l+++ ++a++   la
  CCE28167.1  78 KGAALHGKGDLVGANDAYEQGLKHDASNAQLKSGLA 113
                 5778888899***************99998876665 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.26
      TPR_14  13 alGdpdeAiallrrala 29 
                   +++deAi+++ +a +
  CCE28167.1 264 KKRQFDEAIEHYSKAWD 280
                 5689********99855 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.049
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l++a+++ Gd+++ i+++ +a++ 
  CCE28167.1 291 LGAAYFEKGDYEKCIEACTKAVEE 314
                 899***************999885 PP

  == domain 6  score: 11.5 bits;  conditional E-value: 0.00049
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdda 35 
                  ++++++a++ ++++++A++ ++r l  + +++
  CCE28167.1 328 SYARIGSAYEKQENFEKAVEFYNRSLTEHRTPD 360
                 57899********************99765544 PP

  == domain 7  score: 5.2 bits;  conditional E-value: 0.053
      TPR_14  14 lGdpdeAiallrralalaPddaeaw 38 
                   d+ +A+a++ ++ ++aP+da+ +
  CCE28167.1 399 ENDFPGAVAAYTEMTKRAPEDARGY 423
                 568999***************9876 PP

  == domain 8  score: 8.6 bits;  conditional E-value: 0.0042
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +a+a+  l ++  A++ ++ a++++P++ +a+++ aq
  CCE28167.1 426 RAAAFVKLFEFPSAVEDCNIAIQKDPKFIRAYIRKAQ 462
                 788999999999***********************99 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.45     4e+02      44      65 ..      19      40 ..      14      46 .. 0.80
   2 !   15.9   0.0   1.2e-05     0.011       3      64 ..      46     107 ..      44     110 .. 0.93
   3 ?    0.5   0.0      0.76   6.9e+02       3      22 ..     334     353 ..     332     372 .. 0.76
   4 !   13.6   0.0   6.4e-05     0.057       8      65 ..     399     456 ..     396     464 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.45
       TPR_9 44 clsaAladLeaylalapdapda 65
                ++ aA++ + +++al+p+++  
  CCE28167.1 19 NFDAAIDNFTQAIALQPENHIL 40
                5789999999999999988765 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.2e-05
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 a+++++++w+ al+ +e   +l+Pd +  +   G +l+  G+l +A ++ e+ l ++ ++++
  CCE28167.1  46 AAYASKKEWDSALQDAEKTTQLKPDWAKGWGRKGAALHGKGDLVGANDAYEQGLKHDASNAQ 107
                 6799***********************************************99999876665 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.76
       TPR_9   3 aiaireedweralavverll 22 
                 +++  +e++e+a + ++r l
  CCE28167.1 334 SAYEKQENFEKAVEFYNRSL 353
                 56777777777777777766 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 6.4e-05
       TPR_9   8 eedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65 
                 e+d++ a a++  +   aP+d++ +  R+ + ++l  +  A++d + +++++p+   a
  CCE28167.1 399 ENDFPGAVAAYTEMTKRAPEDARGYSNRAAAFVKLFEFPSAVEDCNIAIQKDPKFIRA 456
                 89************************************************99954444 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2    0.0011      0.99       2      34 .]      27      59 ..      26      59 .. 0.95
   2 ?    0.9   0.0      0.83   7.5e+02       3      31 ..      62      90 ..      61      91 .. 0.86
   3 ?    1.0   0.0      0.81   7.2e+02       1      19 [.      94     112 ..      94     126 .. 0.79
   4 !    7.8   0.1    0.0052       4.7      15      34 .]     287     306 ..     268     306 .. 0.89
   5 ?    2.5   0.0      0.26   2.3e+02      13      34 .]     326     347 ..     316     347 .. 0.88
   6 ?    1.2   0.0       0.7   6.3e+02       2      23 ..     409     430 ..     408     439 .. 0.87
   7 ?    3.9   0.0     0.092        82       5      24 ..     446     465 ..     443     482 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
      TPR_17  2 ylkaleldPnnadaynnLAelllknGdlmtArq 34
                +++a++l P n  +y n+  +++++++++ A+q
  CCE28167.1 27 FTQAIALQPENHILYSNRSAAYASKKEWDSALQ 59
                789************************999987 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.83
      TPR_17  3 lkaleldPnnadaynnLAelllknGdlmt 31
                +k  +l P+ a+ +  ++ +l+ +Gdl  
  CCE28167.1 62 EKTTQLKPDWAKGWGRKGAALHGKGDLVG 90
                6777889***************9999865 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.81
      TPR_17   1 lylkaleldPnnadaynnL 19 
                 +y++ l++d +na +   L
  CCE28167.1  94 AYEQGLKHDASNAQLKSGL 112
                 59**********9865555 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0052
      TPR_17  15 aynnLAelllknGdlmtArq 34 
                  +nnL+ ++ ++Gd++++++
  CCE28167.1 287 YLNNLGAAYFEKGDYEKCIE 306
                 58**************9986 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.26
      TPR_17  13 adaynnLAelllknGdlmtArq 34 
                 a++y   + +++k+ ++++A++
  CCE28167.1 326 AKSYARIGSAYEKQENFEKAVE 347
                 899***************9975 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.7
      TPR_17   2 ylkaleldPnnadaynnLAell 23 
                 y++  ++ P +a  y n+A ++
  CCE28167.1 409 YTEMTKRAPEDARGYSNRAAAF 430
                 78888999***********876 PP

  == domain 7  score: 3.9 bits;  conditional E-value: 0.092
      TPR_17   5 aleldPnnadaynnLAelll 24 
                 a+++dP+   ay  +A+++ 
  CCE28167.1 446 AIQKDPKFIRAYIRKAQAYF 465
                 89***************995 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.9   6.2e+03      13      29 ..       8      24 ..       7      25 .. 0.81
   2 ?    5.9   0.0     0.014        13       5      28 ..      41      64 ..      40      67 .. 0.92
   3 ?   -0.6   0.1       1.5   1.3e+03      20      34 ..     234     248 ..     233     251 .. 0.85
   4 ?   -0.8   0.0       1.7   1.5e+03      13      30 ..     263     280 ..     257     283 .. 0.78
   5 !   13.3   0.1   6.5e-05     0.058       3      30 ..     286     313 ..     285     320 .. 0.86
   6 !    7.2   0.0    0.0053       4.8       2      33 ..     326     357 ..     325     358 .. 0.89
   7 ?   -1.9   0.1       3.8   3.4e+03       9      28 ..     461     480 ..     455     480 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.9
      TPR_10 13 rqrgrydeAealleeal 29
                 ++g+ + Ae+ ++ a+
  CCE28167.1  8 KALGNKAIAEKNFDAAI 24
                67899999999988887 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.014
      TPR_10  5 lnNLanalrqrgrydeAealleea 28
                ++N ++a+ + +++d A++++e++
  CCE28167.1 41 YSNRSAAYASKKEWDSALQDAEKT 64
                7999******************96 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.5
      TPR_10  20 eAealleealairrr 34 
                 e+e l eeal+  ++
  CCE28167.1 234 ESESLDEEALEKKKK 248
                 8899******98765 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.7
      TPR_10  13 rqrgrydeAealleeala 30 
                 ++ +++deA +++ +a +
  CCE28167.1 263 YKKRQFDEAIEHYSKAWD 280
                 677899*****9988876 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 6.5e-05
      TPR_10   3 sslnNLanalrqrgrydeAealleeala 30 
                 + lnNL++a+++ g+y++  + + +a++
  CCE28167.1 286 TYLNNLGAAYFEKGDYEKCIEACTKAVE 313
                 679**************99988888887 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0053
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairr 33 
                 A s+  ++ a+ ++ ++++A++++ ++l  +r
  CCE28167.1 326 AKSYARIGSAYEKQENFEKAVEFYNRSLTEHR 357
                 779999******************99997665 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 3.8
      TPR_10   9 analrqrgrydeAealleea 28 
                 a a++ +++y e ++ + ea
  CCE28167.1 461 AQAYFGMRKYSECVDACAEA 480
                 8899******9988877665 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.4   1.3e+03      22      50 ..      34      66 ..      15      70 .. 0.68
   2 ?   12.9   0.9   0.00011     0.096       2      69 ..     265     332 ..     264     338 .. 0.84
   3 ?   -0.3   0.0       1.4   1.2e+03      32      51 ..     335     354 ..     332     363 .. 0.68
   4 ?    5.6   0.1     0.021        19      25      55 ..     456     487 ..     423     493 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.4
                -HHHHHHH...HHHHHHTT-HHHHHHHHHCT.S CS
      ANAPC3 22 spedayll...AlclylngqykrAyellrka.k 50
                 pe+  l+   + ++ + +++++A++ ++k+ +
  CCE28167.1 34 QPENHILYsnrSAAYASKKEWDSALQDAEKTtQ 66
                455555554567788999999999999988855 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00011
                 TT-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHT CS
      ANAPC3   2 qnnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkL 69 
                 ++++++Ai +++++     ++   +  l+ ++++ g+y++++e + ka ++     +   l+A+++  +
  CCE28167.1 265 KRQFDEAIEHYSKAW-DTFQDITYLNNLGAAYFEKGDYEKCIEACTKAvEEGRAIYADFKLIAKSYARI 332
                 6899***********.99999999999*********************666666667777777777655 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.4
                 HHHHTT-HHHHHHHHHCTSH CS
      ANAPC3  32 clylngqykrAyellrkakl 51 
                 ++ +++++++A e+++++ +
  CCE28167.1 335 AYEKQENFEKAVEFYNRSLT 354
                 56678888888888877733 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC- CS
      ANAPC3  25 dayllAlclylngqykrAyellrka.klnsks 55 
                 +   +A++++ + +y ++ + + +a + + ++
  CCE28167.1 456 AYIRKAQAYFGMRKYSECVDACAEAqQVDVEH 487
                 33336999999999999999999986666666 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0         1   9.1e+02      14      32 ..      18      36 ..       7      37 .. 0.79
   2 ?    1.8   0.0      0.53   4.8e+02      10      30 ..     263     282 ..     258     284 .. 0.78
   3 ?    7.6   0.0    0.0075       6.7       5      28 ..     290     313 ..     290     314 .. 0.89
   4 ?    9.8   0.0    0.0014       1.3       3      28 ..     329     354 ..     327     357 .. 0.86
   5 ?    0.6   0.1       1.2   1.1e+03      12      32 ..     398     418 ..     386     419 .. 0.85
   6 ?   -0.1   0.5       2.1   1.9e+03       2      22 ..     456     476 ..     455     482 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 1
                HHHHHHHHHHHHHHHH-TT CS
       TPR_6 14 gdtdkAlealerlikeYPd 32
                ++ d+A++ + + i   P+
  CCE28167.1 18 KNFDAAIDNFTQAIALQPE 36
                6889999999999988886 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHHHHHHHHH- CS
       TPR_6  10 yrklgdtdkAlealerlikeY 30 
                 y+k  + d+A+e + +  + +
  CCE28167.1 263 YKKR-QFDEAIEHYSKAWDTF 282
                 5566.********99987665 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0075
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +l+ +y++ gd++k +ea  + ++
  CCE28167.1 290 NLGAAYFEKGDYEKCIEACTKAVE 313
                 5899****99********999887 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlik 28 
                 + +++ +y+k+ + +kA+e ++r ++
  CCE28167.1 329 YARIGSAYEKQENFEKAVEFYNRSLT 354
                 5699******99*********99665 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  12 klgdtdkAlealerlikeYPd 32 
                 k +d   A++a+ +  k+ P+
  CCE28167.1 398 KENDFPGAVAAYTEMTKRAPE 418
                 5569999*******9999996 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlea 22 
                 A+ + a++y+ + ++++ ++a
  CCE28167.1 456 AYIRKAQAYFGMRKYSECVDA 476
                 677889****99899999987 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.098        88      17      32 ..      17      32 ..       4      53 .. 0.73
   2 ?   -3.0   0.0       8.9     8e+03      18      32 ..      86     100 ..      79     101 .. 0.83
   3 ?   -2.6   0.0       6.8   6.1e+03       1      16 [.     108     123 ..     108     125 .. 0.83
   4 ?    7.0   0.1     0.007       6.3      16      36 ..     264     284 ..     255     290 .. 0.86
   5 ?   -0.6   0.0       1.6   1.5e+03      18      32 ..     299     313 ..     296     317 .. 0.61
   6 ?    7.3   0.1    0.0056         5       4      31 ..     326     353 ..     325     358 .. 0.87
   7 ?   -3.0   0.0       8.9   7.9e+03      25      39 ..     468     482 ..     467     498 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.098
         MIT 17 agnyeeAlelYkeale 32
                ++n+++A++++++a+ 
  CCE28167.1 17 EKNFDAAIDNFTQAIA 32
                4666666666666664 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.9
         MIT  18 gnyeeAlelYkeale 32 
                 g+   A ++Y+++l+
  CCE28167.1  86 GDLVGANDAYEQGLK 100
                 777789999**9996 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 6.8
         MIT   1 ldkAlelvkkAveeDn 16 
                 l+++l+ v+kA++ + 
  CCE28167.1 108 LKSGLASVEKAMQHEA 123
                 6789999****99986 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.007
         MIT  16 nagnyeeAlelYkealelLlq 36 
                 ++ +++eA+e Y++a + ++ 
  CCE28167.1 264 KKRQFDEAIEHYSKAWDTFQD 284
                 6789************99975 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 1.6
         MIT  18 gnyeeAlelYkeale 32 
                 g+ye+++e+ ++a+e
  CCE28167.1 299 GDYEKCIEACTKAVE 313
                 566666665555554 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0056
         MIT   4 AlelvkkAveeDnagnyeeAlelYkeal 31 
                 A ++++    +++++n+e+A+e Y  +l
  CCE28167.1 326 AKSYARIGSAYEKQENFEKAVEFYNRSL 353
                 66777888899*************9987 PP

  == domain 7  score: -3.0 bits;  conditional E-value: 8.9
         MIT  25 elYkealelLlqalk 39 
                 ++Y+e+++ + +a +
  CCE28167.1 468 RKYSECVDACAEAQQ 482
                 689999998776655 PP

>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0027       2.4      12      34 ..      15      37 ..       4      38 .. 0.80
   2 ?   -0.8   0.1       1.2   1.1e+03      16      27 ..     267     278 ..     266     278 .. 0.88
   3 ?    3.3   0.1     0.065        58      14      28 ..     339     353 ..     338     354 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0027
    SHNi-TPR 12 lEnenFpqAveDlrkaLeLreql 34
                +   nF+ A+ +++ a++L+ ++
  CCE28167.1 15 IAEKNFDAAIDNFTQAIALQPEN 37
                5667***************9765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
    SHNi-TPR  16 nFpqAveDlrka 27 
                 +F++A+e + ka
  CCE28167.1 267 QFDEAIEHYSKA 278
                 8******99886 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.065
    SHNi-TPR  14 nenFpqAveDlrkaL 28 
                 +enF+ Ave ++++L
  CCE28167.1 339 QENFEKAVEFYNRSL 353
                 79*******999998 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       8.2   7.3e+03       9      20 ..      47      58 ..      43      59 .. 0.90
   2 ?   -1.6   0.0       4.8   4.3e+03      12      23 ..     264     275 ..     263     278 .. 0.82
   3 ?    2.2   0.1      0.29   2.6e+02       4      22 ..     289     307 ..     288     315 .. 0.78
   4 ?    4.6   0.0     0.052        46       8      25 ..     334     351 ..     328     355 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 8.2
         PPR  9 gycknGkleeAl 20
                +y+++ +++ Al
  CCE28167.1 47 AYASKKEWDSAL 58
                8********998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.8
         PPR  12 knGkleeAlelf 23 
                 k+++++eA+e +
  CCE28167.1 264 KKRQFDEAIEHY 275
                 7899****9966 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.29
         PPR   4 nslIsgycknGkleeAlel 22 
                 n l  +y  +G++e+++e 
  CCE28167.1 289 NNLGAAYFEKGDYEKCIEA 307
                 556679**********985 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.052
         PPR   8 sgycknGkleeAlelfke 25 
                 s+y k  ++e+A+e++++
  CCE28167.1 334 SAYEKQENFEKAVEFYNR 351
                 79*************986 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.029        26      14      36 .]      17      37 ..       5      37 .. 0.86
   2 ?   -0.5   0.1       1.5   1.3e+03       8      27 ..      79      96 ..      79     103 .. 0.89
   3 ?    3.2   0.2     0.099        88       6      25 ..     257     276 ..     256     278 .. 0.87
   4 ?    5.1   0.2     0.026        23       7      21 ..     291     305 ..     287     307 .. 0.82
   5 ?    2.4   0.1      0.18   1.6e+02      14      26 ..     339     349 ..     327     353 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.029
                TT-HHHHHHH..HHHHHHH-TT- CS
       TPR_3 14 kkkyqeArelfsYallaildken 36
                 k+++ A++   + ++ +l++en
  CCE28167.1 17 EKNFDAAIDN--FTQAIALQPEN 37
                59********..66********9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.5
                HHHHHHTT-HHHHHHH..HH CS
       TPR_3  8 AaefynkkkyqeArelfsYa 27
                +a+++ k+++  A ++  Y+
  CCE28167.1 79 GAALHGKGDLVGANDA--YE 96
                7999******999999..76 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.099
                 HHHHHHHHTT-HHHHHHH.. CS
       TPR_3   6 syAaefynkkkyqeArelfs 25 
                 +++ e y k +++eA+e +s
  CCE28167.1 257 ALGTENYKKRQFDEAIEHYS 276
                 67888899*********988 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.026
                 HHHHHHHTT-HHHHH CS
       TPR_3   7 yAaefynkkkyqeAr 21 
                 ++a+++ k++y++ +
  CCE28167.1 291 LGAAYFEKGDYEKCI 305
                 89*********9855 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.18
                 TT-HHHHHHH..H CS
       TPR_3  14 kkkyqeArelfsY 26 
                 ++++++A+e+  Y
  CCE28167.1 339 QENFEKAVEF--Y 349
                 89********..5 PP

>> TOM20_plant  Plant specific mitochondrial import receptor subunit TOM20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2    0.0034       3.1      91     116 ..      15      40 ..       9      68 .. 0.82
   2 ?   -0.9   0.1       1.3   1.2e+03      89     106 ..     268     285 ..     240     323 .. 0.64
   3 ?    4.1   0.1     0.039        35      82     118 ..     329     364 ..     324     382 .. 0.79
   4 ?   -1.5   0.3       1.9   1.7e+03      93      93 ..     494     494 ..     410     567 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0034
                  HHHHHHHHHHHHHHHHHHH-TT-HHH CS
  TOM20_plant  91 eakenfekatqffqqavdedPdndly 116
                   a++nf+ a + f qa++ +P+n++ 
   CCE28167.1  15 IAEKNFDAAIDNFTQAIALQPENHIL 40 
                  5899*******************863 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
                  HHHHHHHHHHHHHHHHHH CS
  TOM20_plant  89 eeeakenfekatqffqqa 106
                   +ea e++ ka + fq  
   CCE28167.1 268 FDEAIEHYSKAWDTFQDI 285
                  456666666666666654 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.039
                  HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH CS
  TOM20_plant  82 fafltpdeeeakenfekatqffqqavdedPdndlyrk 118
                  +a++ +   e +enfeka +f++++  e+   d+ +k
   CCE28167.1 329 YARIGS-AYEKQENFEKAVEFYNRSLTEHRTPDVLKK 364
                  555544.356789***********9999887777665 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.9
                  H CS
  TOM20_plant  93 k 93 
                  +
   CCE28167.1 494 R 494
                  2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1575  (0.0878465); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 3701.54
//
Query:       CCE28168.1  [L=127]
Description: uncharacterized protein CPUR_01642 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.28s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 944.12
//
Query:       CCE28169.1  [L=161]
Description: uncharacterized protein CPUR_01643 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1149.07
//
Query:       CCE28170.1  [L=311]
Description: uncharacterized protein CPUR_01644 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2256.62
//
Query:       CCE28171.1  [L=466]
Description: related to low affininty zinc transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-55  188.5   0.0    2.6e-55  188.0   0.0    1.2  1  Zip       ZIP Zinc transporter
  ------ inclusion threshold ------
        2.2    8.3   6.6       0.64   10.1   0.1    2.8  3  Sdh_cyt   Succinate dehydrogenase/Fumarate reductase transmem


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.0   0.0   2.9e-59   2.6e-55       4     332 ..      53     462 ..      50     463 .. 0.89

  Alignments for each domain:
  == domain 1  score: 188.0 bits;  conditional E-value: 2.9e-59
         Zip   4 kilaiiaililsllgllgpllvpkiskl.lsklllslllafavGvllgtaflhLlPealealeesqleeehth...plagllvllGflllllveklltm 98 
                  + a+++il+ls l++ +pll++  +   ++ +++++   ++ Gvll+taf+hLlP a+e+l +++l   +     pl+gl+++++++++  ve++lt 
  CCE28171.1  53 HVFALLLILALSTLACGFPLLSRQATTGkRQTNIIFYSQHIGTGVLLATAFVHLLPMAFESLTDPCLPYFFSKgykPLPGLVAMVSAIMVVGVESYLTA 151
                 57899*****************9888889*************************************976444499************************ PP

         Zip  99 ivekksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqas.......................... 171
                   ++ + h++  ++  +++ +e + ++    ++++++    + ++  + +++++  +r g  + ++ e++q                            
  CCE28171.1 152 RGAG-HAHSHAAHHLYDEDGEEGDGGGARRRSNSQTMPLRDQSGVTGRRRDTTDFGMRPGRLSFQDAEASQGLvagvsplpegtptagshkrkttendd 249
                 9999.7777777777777777777777777777777777766666666666666666666666666555554478888888888888888888888899 PP

         Zip 172 ...............................................eeedkeklaslkvraiilllglilHsfidGLAlGvssssstgislfiAvllH 223
                                                                  ++ e++ ++ +  ++l+ g+ +Hs+++G+Al+  ++  ++++ ++A+++H
  CCE28171.1 250 gyddegdsdldldmeeldpapvdgngvyasltkpdsrvgadksdpsmLPQSPEEIRRQLLQCLLLEAGILFHSVFIGMALS-VATGPAFVVFLVAISFH 347
                 99999999*************************************99999999999999**********************.56777899999****** PP

         Zip 224 elpeelglgaiLlkaglsrkkav..llnllfaltaplGiliGilvrs..isessgaeivsgillalsaGtflYvalvellphEllnek..gssslkqsl 316
                 + +e+l+lg++++   ++rk++   l++l+++lt+plG +iG+ v +  ++ s+g ++v g ++a+saG++lY +lv+ll++++l+ek  +  + k+ l
  CCE28171.1 348 QSFEGLALGSRIAAVPFPRKSIRpwLMVLAYGLTTPLGQAIGLIVHKmyDPASMGGLLVVGFMNAISAGLLLYAGLVQLLAEDFLSEKsyRVLRGKKRL 446
                 **********************999********************99*****************************************885556799** PP

         Zip 317 lqllglllGfalmlll 332
                  ++++++ G++lm+++
  CCE28171.1 447 QAYVCVVGGALLMAVV 462
                 **************96 PP

>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   7.1e-05      0.64       7      77 ..      73     141 ..      71     152 .. 0.75
   2 ?    0.1   0.6     0.087   7.8e+02      30      77 ..     326     376 ..     312     390 .. 0.59
   3 ?   -1.3   0.2      0.24   2.1e+03      68      94 ..     411     431 ..     372     462 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.1e-05
     Sdh_cyt   7 lsphlqlyrlplgawlsilhritGvallvglllllvwlllalslsspesfarvvallaspiklilllllll 77 
                 ls++ ++++ +++ + +  h  tGv+l+ ++++ll   ++  sl++p     ++ +++ +  l+ ++ +++
  CCE28171.1  73 LSRQATTGKRQTNIIFYSQHIGTGVLLATAFVHLL--PMAFESLTDPCLPYFFSKGYKPLPGLVAMVSAIM 141
                 578889999999999999***********888888..5788888888777777777766333333343333 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.087
     Sdh_cyt  30 Gvallvglllllvwlllalslsspesfarv.....vallaspiklilllllll 77 
                 G al v++ + +v++  ++++s ++sf+ +     +a ++ p k+i  +l++l
  CCE28171.1 326 GMALSVATGPAFVVF--LVAISFHQSFEGLalgsrIAAVPFPRKSIRPWLMVL 376
                 566666666666553..344456666666666555333333444444444443 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.24
     Sdh_cyt  68 klilllllllallyHllnGiRhllwDl 94 
                 ++i   lll+a l      +++l++D+
  CCE28171.1 411 NAISAGLLLYAGL------VQLLAEDF 431
                 4444444444444......45555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3361.58
//
Query:       CCE28172.1  [L=273]
Description: uncharacterized protein CPUR_01646 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.002   18.3   0.0     0.0042   17.3   0.0    1.6  1  Acetyltransf_1  Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
       0.12   12.3   1.5       0.22   11.5   1.5    1.3  1  RseC_MucC       Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.7e-07    0.0042      26      92 ..     130     217 ..     109     237 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.7e-07
                     HHHHSTTC...EEEE.EEETTEEEEEEEEEEEET..................TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT CS
  Acetyltransf_1  26 esfsleae...gllv.aeedgeliGfisllkipd..................ekggvayieslaVspeyrgkGlGsaLlealeeraree 92 
                     ++  ++++   +  + a++++e+i+++ l+++                     kgg ++i+ +  + +yrgkG+G  +l+ ++   r++
      CCE28172.1 130 QWITRPDGnedYV-LaARFGNEIIATLVLRIVASdapaaasrstkktrpsslAKGGSGIIRAWTTRYKYRGKGIGGDMLRLAVLTTRSK 217
                     4433333342334.36***********8888888888888888899999**************************99999888666666 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.5   2.5e-05      0.22      61     114 ..      61     114 ..      56     123 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
   RseC_MucC  61 ksllkaallvYllPllllilgallgsallgssellaalgallglvlgflivrll 114
                 +++ + +++v  + l++l++g + +++l ++ +l +al++++gl++++l + +l
  CCE28172.1  61 RQVASFSVIVHPVCLAGLVAGCASIYSLHAKRDLGTALIMMCGLAIAYLAAVRL 114
                 56667777888888999999999999999******************9987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2091.57
//
Query:       CCE28173.1  [L=577]
Description: phosphate transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-46  158.3  13.9    5.3e-46  157.4  13.9    1.4  1  Sugar_tr  Sugar (and other) transporter
    2.3e-18   66.2  23.6      4e-18   65.5  23.6    1.4  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.4  13.9   5.9e-50   5.3e-46       2     448 ..      59     546 ..      58     547 .. 0.81

  Alignments for each domain:
  == domain 1  score: 157.4 bits;  conditional E-value: 5.9e-50
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHH...HHHHHHHHHHHHHHH-TT CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkksl...liaavlfvigavlqaaak 97 
                 ++va +g +   Yd+++ +  + +l+ ++  g+ k  ++ ++      +i  ++++G ++G+l +g+l+d++GRkk +   li+++++ ig+ l+  ++
  CCE28173.1  59 CVVAGVGFFTDSYDIFTASLLTLMLGIVYYPGVGKMPTNSDN------AIKLATSAGTVVGQLGFGFLADVVGRKKMYgleLIVIIFATIGQSLTSGSP 151
                 88999999*************************999988886......9***************************9866688999999******9999 PP

                 TTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-....................TTHHHHHHHC CS
    Sugar_tr  98 gknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn....................adgwrillgl 176
                 +   + ++i+ Rv++Gig+G+ + l+++ +sE+A++++Rga++     +  +G+l aa ++l++    +                    ++ wr l+g+
  CCE28173.1 152 ACDIIGLIIFWRVIMGIGIGGDYPLSSIITSEFATTRWRGAMMAAVFAMQGLGQLCAALVMLFVTLGFKdslsgardvarcdgdcqvsvDKMWRTLIGF 250
                 889999******************************************************9999666666999************************** PP

                 CHHHHHHHHHHGGGS---HHHHHHTT-HH.HHHHHHHH.HHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHHSH...HHHHHHHHHHHHHHTT CS
    Sugar_tr 177 qlvpallllilllflPESPrylvekgkee.eakevlak.lrgeedadrelaeekdsleaeqeee....kaswkellssktvrqrlligvvlqifqqltG 269
                  +vpa l l+++l++PE+Pry++ + ++  +a+  ++  + g++++d ++++ +   + ++ee+    ka w+ + +     + +l+ +   ++  ++ 
  CCE28173.1 251 GAVPACLALYFRLTIPETPRYTFDVARDIeKAQDDVKAyISGKSPKDADAVARAVVAQGSKEETlevpKAGWRDFGKHYAKPKNFLLLF-GTAGSWFCL 348
                 **********************8888776577665555588887777777777777777766667799666666665544222222222.223333333 PP

                 HHHHHHHT...TTHHHHSS-THH..............HHHHHHHHHHHHH.HHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CH CS
    Sugar_tr 270 inaimyys...ptifenlglsks..............llvtiivgvvnfv.atfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasi 350
                   a++ +s    +i+e +g+s+               +++++i++   +v    v++ ++d +GR ++ + G+a+  i+f+++g   +++ +     ++
  CCE28173.1 349 DVAFYGLSlnnAVILEAIGYSTNansvtsvyqllyntAVGNLIIVLAGAVpGYWVSVATIDTLGRWPIQMGGFAILWILFMVMG---FAYHQL---GQN 441
                 333333332224566666666666666666665555556665554444441667889**************************9...555544...368 PP

                 HHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH.....T-HHHHHHH...HHHHHHHHHHHHHS--ST CS
    Sugar_tr 351 vaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig.....ggyvflvfa...glavlfiifvfffvpetk 441
                 ++++ ++l  ++f++g++++ +++  E+fp++ Rs+   i++a+  + +++ +  + ++  +       ++++ +v +   ++++l+  ++ +f+petk
  CCE28173.1 442 GLLAIYVLAQFFFNFGPNTTTFIVPGEVFPTRYRSTSHGISAAAGKIGSIIGQGAISTLRTKGAtkkdpNPWMDNVLKiyaFIMLLG-CVTTLFIPETK 539
                 88888999999****************************************998888887777778999777766655000555444.4677899**** PP

                 T--CCCC CS
    Sugar_tr 442 grtleei 448
                  +tlee+
  CCE28173.1 540 RKTLEEL 546
                 *****95 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5  23.6   4.5e-22     4e-18      41     352 ..     106     493 ..      59     494 .. 0.79

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 4.5e-22
       MFS_1  41 yalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fass.....lw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfsl 132
                  ++g++v++l +G+l+d +Gr++++ l l++ +++ +++  ++s+     +  l+++ rv++G+g g+ +p++ +++++ ++ + rg +++ + a+ +l
  CCE28173.1 106 TSAGTVVGQLGFGFLADVVGRKKMYGLELIVIIFA-TIGQsLTSGspacdIIgLIIFWRVIMGIGIGGDYPLSSIITSEFATTRWRGAMMAAVFAMQGL 203
                 578999*****************************.888866433446665558********************************************* PP

       MFS_1 133 Gailgpllggllasslg.........................Wravfyilaivsllafvlfllllpeepperkrkspkeee.................. 188
                 G ++++l+  +++  lg                         Wr +  + a+ ++la+    + l+ ++++r ++  +++                   
  CCE28173.1 204 GQLCAALVMLFVT--LGfkdslsgardvarcdgdcqvsvdkmWRTLIGFGAVPACLALY---FRLTIPETPRYTFDVARDIekaqddvkayisgkspkd 297
                 **********999..55559**************************9999999999943...5555555555555555555679999999999999999 PP

       MFS_1 189 .................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllpl...ylqevlgls.......glllaglllallalvgail 260
                                    + +a++++  k+  k++ ++ ll++ ++ +f++  +++ l l    + e  g+s       +++++++  a++ l+++ +
  CCE28173.1 298 adavaravvaqgskeetLEVPKAGWRDFGKHYAKPKNFL-LLFGTAGSWFCLDVAFYGLSLnnaVILEAIGYStnansvtSVYQLLYNTAVGNLIIVLA 395
                 999999999999888888888888888888888888886.66666666667777666666655545999999999999985555555555555555555 PP

       MFS_1 261 allagrlsdr..lgrrrrlllallllllaalglallavt...ssavllllvlvliGfglgfv....fpsllalasdlappeeagtasglfntagslgga 350
                 + + g+++    +    r+ + +++++++ +++++++++     +  ll+++vl+ f   f+    +++ + +  +++p++++ t  g+   ag +g++
  CCE28173.1 396 GAVPGYWVSVatIDTLGRWPIQMGGFAILWILFMVMGFAyhqLGQNGLLAIYVLAQF---FFnfgpNTTTFIVPGEVFPTRYRSTSHGISAAAGKIGSI 491
                 444444443334555556777777777777777777777222444444445555555...333335********************************* PP

       MFS_1 351 lg 352
                 +g
  CCE28173.1 492 IG 493
                 98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4082.14
//
Query:       CCE28174.1  [L=894]
Description: related to potassium:hydrogen antiporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-58  196.0  44.9    1.2e-57  195.5  44.9    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
  ------ inclusion threshold ------
      0.012   15.9   0.1      0.035   14.4   0.1    1.8  1  DUF1805         Domain of unknown function (DUF1805)


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5  44.9   1.3e-61   1.2e-57       6     379 ..      62     451 ..      57     454 .. 0.91

  Alignments for each domain:
  == domain 1  score: 195.5 bits;  conditional E-value: 1.3e-61
                     HHHHHHHH..H.HHHTTSXHHHHHHHHHHHHTTTTTS.................HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHH CS
  Na_H_Exchanger   6 llallvgl..l.arrlklpeivgliiaGlllGpsglg...lieps.........eedlevlselglilllFlaGleldlrelrknlksilllall 85 
                     l+++++ l    + ++++p ++++++ G++lGps+lg                    l+ +++lgl+l lFl+Gle+d r l +n++ ++ +a++
      CCE28174.1  62 LIIIVCHLlhWpLAKIRQPRVIAEVVGGIILGPSVLGripG---FqaalfpeasIPNLNNVANLGLVLYLFLIGLETDVRFLVSNWRIATSVAVA 153
                     334444444335999**********************4440...3566677767899999*********************************** PP

                     HHHHHHHHHHHHHH.H..........HTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXX CS
  Na_H_Exchanger  86 gvlitvvliGlllyll..........lilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeea 170
                     g+++++ + G +l+++          l +    + +l++g+++++t ++v+ +il+e++++++++g ++l+++v nD+v+++lla+++al+    
      CCE28174.1 154 GLALPFGI-GCALAYGvynafhnepgLKPIAFSIYMLFIGIAVAITAFPVLCRILTELKLLDTSVGVVTLSAGVANDVVGWILLALCVALV-NAG 246
                     ********.999997799******95447777899********************************************************.667 PP

                     XTSSSTSXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHH.HHHHHTTHHHHHHHH CS
  Na_H_Exchanger 171 ggetslllllliflvvavgglllglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvls.eyefsnklseklesf 264
                     +g ++l+ ll +f +v+++++++  ++gw+lr+      + +++ + ++ll+al+aa+++ ++g++ i+g+f+aGl+++ + +f+ +++ekle +
      CCE28174.1 247 TGLNALWILLASFGFVLALLFAVQPALGWILRRNGSIENGPSQSVISFILLIALAAAFFTGIIGIHPIFGSFMAGLIIPrDERFNIHVTEKLEDL 341
                     778888888899*********************999879999*************************************99999999******** PP

                     HHHHHHHHHHHHHHHHSXHHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTTSST CS
  Na_H_Exchanger 265 reglfnplfFvlvGlsldlkvlnnhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgavalalaalgpalgllarelyal 359
                     +  lf+pl+F l+Gl+++l +l+     + +v+++++a ++++++++  ++r++g  +re+l+ig++++++g v l+++++g ++++l++ ++++
      CCE28174.1 342 IGALFLPLYFTLSGLKTNLGLLD-TGAAWGYVFAVTFAAFFSKTIGASMAARFSGMVWRESLTIGVLMSCKGLVELIVLNIGLQAKILSTRTFTI 435
                     **********************7.7899******************************************************************* PP

                     TTCSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger 360 livvvlftvlvqGlslkpll 379
                     ++v++l+t++     ++p++
      CCE28174.1 436 FVVMALLTTF----ATTPIV 451
                     **********....444444 PP

>> DUF1805  Domain of unknown function (DUF1805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   3.9e-06     0.035      13      47 ..     798     833 ..     789     834 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.9e-06
                 TT--EEE-.....-S--SHHHHHHSB-SEE-HHHHH CS
     DUF1805  13 lgdlaarvivag.sGVrtledllaapvesvteaAee 47 
                  + +a rv+  +  GV+t+edll+  + ++++ A+e
  CCE28174.1 798 SETMARRVKFETaAGVSTMEDLLQHALSETNSDAAE 833
                 457899999999*******************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 5658.97
//
Query:       CCE28175.1  [L=517]
Description: related to DnaJ-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-76  254.9   1.9    4.9e-76  254.9   1.9    2.8  4  DnaJ-X          X-domain of DnaJ-containing
    2.7e-25   88.2   0.3    6.8e-25   87.0   0.3    1.7  1  DnaJ            DnaJ domain
  ------ inclusion threshold ------
        3.6    7.9   7.2       0.72   10.2   0.9    2.9  2  DUF4378         Domain of unknown function (DUF4378)


Domain annotation for each model (and alignments):
>> DnaJ-X  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   2.5      0.21   1.3e+03     106     140 ..     113     159 ..      46     170 .. 0.58
   2 ?   -2.3   0.2       0.4   2.4e+03     113     135 ..     244     266 ..     199     270 .. 0.64
   3 !  254.9   1.9   8.2e-80   4.9e-76       1     211 []     274     478 ..     274     478 .. 0.99
   4 ?   -5.1   1.4         3   1.8e+04     115     130 ..     489     495 ..     481     505 .. 0.35

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.21
      DnaJ-X 106 tmee.lakeqekk...........keeekeeeeeteeelaemekkll 140
                 tm   +++ +e++           +e+    ++ete++  ++e+ ++
  CCE28175.1 113 TMDItMTETEEAEaaaavaaaaeyQETGAPGSKETEKKDSNEEESVA 159
                 22221112222223445555555444445555555555555555555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.4
      DnaJ-X 113 eqekkkeeekeeeeeteeelaem 135
                  q++k+ +++  ++e+ e+la +
  CCE28175.1 244 GQKEKERKKSGLTKEQREQLAAY 266
                 22222233444455555555544 PP

  == domain 3  score: 254.9 bits;  conditional E-value: 8.2e-80
      DnaJ-X   1 qeereeeLakkLrekLspyveadkke.etesFkkkleeeaesLkmesFGleilhtIGkiYknkAksflkskqkflglgglfssvkekgrvvkdtfktvs 98 
                 ++er+e+L++kL +++s ++e+dk + +t++F++k++ e+e+LkmesFGl+ilh+IG++Y +kA+ +l s qkflg+gg+fs++k+kg+ vk+t++t+s
  CCE28175.1 274 RKERVETLTQKLLDRVSVWTETDKGDdVTRAFQEKMRLEVENLKMESFGLDILHAIGQTYVSKASGLLRS-QKFLGIGGFFSRLKDKGTLVKETWNTIS 371
                 689*******************99778*******************************************.**************************** PP

      DnaJ-X  99 saldaqstmeelakeqekkkeeekeeeeeteeelaemekkllgkvLaaawkgskfeIestlrevcdkvLkDksvdketrlkRAeaLkilGeifqkakrt 197
                 saldaq+t+e++ak++ k+       +++t+e++ e+e+ ++gk+L aaw+gskfeI+s+lrevcd+vL+Dk++++++rl+RA+aL ++G+i+ ka+rt
  CCE28175.1 372 SALDAQQTVEDMAKMEAKG------GDDWTDEKRVEYERRVTGKILTAAWRGSKFEIQSVLREVCDSVLYDKKISLQKRLERAQALVLIGDILVKAQRT 464
                 *******************......************************************************************************** PP

      DnaJ-X 198 ekeeeearvfeelv 211
                 ++ee +  vfe+lv
  CCE28175.1 465 PEEEGDYLVFEQLV 478
                 ****99999**997 PP

  == domain 4  score: -5.1 bits;  conditional E-value: 3
      DnaJ-X 115 ekkkeeekeeeeetee 130
                 e+k         + ++
  CCE28175.1 489 EDK---------KRKD 495
                 111.........1111 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.3   1.1e-28   6.8e-25       2      63 .]       7      68 ..       6      68 .. 0.99

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 1.1e-28
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                yY+ Lgv+++a+  eIkkaYrk+a+ +HPDknp+dp+a+ekF+ i eAy+vLsd + Rk+YD
  CCE28175.1  7 YYDALGVQPTATGLEIKKAYRKMAILHHPDKNPNDPTAHEKFQTIGEAYQVLSDTDLRKAYD 68
                9************************************************************9 PP

>> DUF4378  Domain of unknown function (DUF4378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.19   1.1e+03      30      60 ..     219     250 ..     204     319 .. 0.70
   2 ?   10.2   0.9   0.00012      0.72     103     145 ..     359     400 ..     351     436 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.19
     DUF4378  30 es.pidpslfeeleekksss.....sekkrreerser 60 
                 ++ p+ p l ++ +++ +s+           +++ er
  CCE28175.1 219 TQiPLRPALADKAHDDAASAtegeaG-----QKEKER 250
                 33678888888877776666433331.....222222 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00012
     DUF4378 103 geqLleevwseieewlsseelvvdelvdkdlsrrsgkwl.dled 145
                 +  L++e w+ i++   +++++v+++ +++ +++ + w+ + ++
  CCE28175.1 359 KGTLVKETWNTISS-ALDAQQTVEDMAKMEAKGG-DDWTdEKRV 400
                 5679**********.45569************99.889844444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1586  (0.08846); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 3724.06
//
Query:       CCE28176.1  [L=762]
Description: uncharacterized protein CPUR_01650 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1875  (0.104579); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.50
# Mc/sec: 4571.44
//
Query:       CCE28177.1  [L=368]
Description: related to cytochrome b-type NAD(P)H oxidoreductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-15   55.2   0.0    9.1e-15   54.6   0.0    1.3  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain
  ------ inclusion threshold ------
        4.1    6.7   8.0        5.8    6.2   8.0    1.1  1  U79_P34   HSV U79 / HCMV P34


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0     1e-18   9.1e-15       3      73 ..     281     352 ..     279     353 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 1e-18
                 HHHTTTECTT..EEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEEE CS
      Cyt-b5   3 eelskhngkn..dlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkylvGkl 73 
                 + l+++ g +  d+w+a++g+VY+v+ ++ +hpGg   +l+ a +D t++f  v h + ++e +l+++lvG+l
  CCE28177.1 281 SMLKNQTGRRgkDAWMALNGRVYNVTPYAAFHPGGIPELLRGAARDGTKLFGEV-HPWVNYETMLAACLVGVL 352
                 556666655556******************************************.****************98 PP

>> U79_P34  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   8.0   0.00064       5.8     150     204 ..      55     107 ..      42     117 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00064
     U79_P34 150 ldrkkaddeqrkrsgkqkekrkvedidkkkedekrkeeerkksdedkssdkkeel 204
                  dr+k++ eqr    kq ++ k +d++   ++ek k+ee ++ d + s  +k+  
  CCE28177.1  55 IDRPKEKREQREGEEKQGKHEKQDDME--EHEEKVKQEEYRRHDTHTSVSSKNSA 107
                 699999999988877777777776665..56889999999999987777776643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1439  (0.080261); expected 358.6 (0.02)
Passed bias filter:                      719  (0.0401026); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 2607.41
//
Query:       CCE28178.1  [L=824]
Description: related to campothecin resistance conferring protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-39  133.2   0.0    1.4e-38  131.9   0.0    1.8  1  NIBRIN_BRCT_II  Second BRCT domain on Nijmegen syndrome break
    2.5e-08   34.2   0.1    8.3e-08   32.5   0.1    1.9  2  FHA             FHA domain
     0.0013   18.6   0.7     0.0032   17.3   0.1    1.9  2  RTT107_BRCT_5   Regulator of Ty1 transposition protein 107 BR
  ------ inclusion threshold ------
       0.12   12.8   0.0        1.1    9.6   0.0    2.6  2  Yop-YscD_cpl    Inner membrane component of T3SS, cytoplasmic


Domain annotation for each model (and alignments):
>> NIBRIN_BRCT_II  Second BRCT domain on Nijmegen syndrome breakage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   0.0   3.1e-42   1.4e-38       3     119 .]     238     361 ..     236     361 .. 0.97

  Alignments for each domain:
  == domain 1  score: 131.9 bits;  conditional E-value: 3.1e-42
  NIBRIN_BRCT_II   3 RkelFegktFvfldkkqyeklspvitnGgGkall...eeeettaedlvryvkkvage......edgselleskgvvvvrvrpkkssteewiaeve 88 
                     Rk++F+g+tF+f+d++q+++l+++itnG+Gka++   ++eet  +d+vryvk+ age      edgse   +kgvvvvr+ p+k+++ +w+a ++
      CCE28178.1 238 RKDVFDGYTFIFYDNTQFSNLMAPITNGSGKAIMraiTPEETPIDDFVRYVKQEAGEkglgsfEDGSE---GKGVVVVRYIPAKGEHINWYAAFI 329
                     ************************************************************77777766...************99********** PP

  NIBRIN_BRCT_II  89 nelakk.gqrvIeesEildAilacsasklcnP 119
                     ++++++ ++r+Ie++E+l+Ail ++as l++P
      CCE28178.1 330 TQVSLRlDHRPIEQNEFLEAILIKDASILRRP 361
                     ******************************99 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   1.8e-11   8.3e-08       1      64 [.      23      96 ..      23     101 .. 0.88
   2 ?   -3.4   0.0       2.9   1.3e+04      38      51 ..     446     459 ..     443     466 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.8e-11
                EEEESS..TTSSEETTSTTSTTTEEEEEEETT..........CEEEEEEEESSSSSEEETTEEESTTSEEEE-TTE CS
         FHA  1 vtiGRs..sdcdivlddpsiSrkHalikfdkg..........sgkvyleDlgSknGtfvNgqrigkgepveLksgd 64
                + +GR   +   + +++++iSrkH+++++++           + k+ +eDl  k Gt vNg++i+   +  L++g+
  CCE28178.1 23 YLFGRRasEAGRLAISHSTISRKHLTVVVESVqdgyahdlteRSKLIVEDLATKTGTVVNGTKIRG--SKYLSNGE 96
                6789997666788899***********99999999*******99*********************8..66677776 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.9
                 EESSSSSEEETTEE CS
         FHA  38 DlgSknGtfvNgqr 51 
                 D +  nG fv +++
  CCE28178.1 446 DENEENGLFVSQEQ 459
                 67889****97754 PP

>> RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   7.1e-07    0.0032      30      88 ..     130     189 ..     114     205 .. 0.81
   2 ?   -3.0   0.1       1.5   6.6e+03       5      39 ..     522     557 ..     519     563 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.1e-07
                    .SSHHHHHHHHHTTEEE-S..GCCT-SEEE-SS---SHHHHHHCCCTTEEE-CHHHHHHHH CS
  RTT107_BRCT_5  30 nkedsdkkkLrklGikivq..eakkcntliApkilRTeKFLksLskapkilspdfiedvLk 88 
                    +  ++ +++ ++l+ik+++  + +++++++A k   T+K L++L  ++ +++++f++++ +
     CCE28178.1 130 DPLAKLRQQFEQLDIKLLTdyDIQHTTHVVARKR-NTAKGLQALINGKSVVTETFLDALTQ 189
                    445566788999*******88889999*999765.7********************98766 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.5
                    HHHHTSSSXXX--EEEEESSS.TT...SSHHHHHHH CS
  RTT107_BRCT_5   5 kkkkkkkskpevkiravlTgceeevn.kedsdkkkL 39 
                     k  +k++k+++++ a+ +  +ee +   +++++ L
     CCE28178.1 522 VKAPTKRQKEKLDVLAMASRHREEAEaRARAERDDL 557
                    566677888888898998888888776444444444 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00024       1.1       9      78 ..      12      85 ..      10     105 .. 0.76
   2 ?   -2.0   0.0         1   4.5e+03      29      71 ..     350     390 ..     345     397 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00024
                  T-EEEE.TTEEEEEES-TT..-SEE---TTS-TT-EEEEEE.TTEEEEEE-CESS--EETTEE-SECC--TTSE CS
  Yop-YscD_cpl  9 GaeveL.eegevviGsded..cDivLsDkevsrkhlkLeve.eesvrledlgsrngllvngerveelelrpgdv 78
                  G+++ L  ++++++G+  +    + +s +++srkhl++ ve  ++  ++dl +r +l+v++   ++ ++  g++
    CCE28178.1 12 GRRMWLrPGKTYLFGRRASeaGRLAISHSTISRKHLTVVVEsVQDGYAHDLTERSKLIVEDLATKTGTVVNGTK 85
                  66677766788999987766567999999*******99998546677788888888888887776555555544 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1
                   EE---TTS-TT-EEEEEETTEEEEEE-CESS--EETTEE-SEC CS
  Yop-YscD_cpl  29 ivLsDkevsrkhlkLeveeesvrledlgsrngllvngerveel 71 
                   i+++D ++ r+ l++e+ + s  +   gs+ ++  ++e +e++
    CCE28178.1 350 ILIKDASILRRPLEVETPSGSQAVG--GSTAEVSSTHELHEQA 390
                   8899999999999999999998888..8888888888877754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (824 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1228  (0.0684924); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.44
# Mc/sec: 5604.48
//
Query:       CCE28179.1  [L=509]
Description: related to protein MCH2 (monocarboxylate permease homolog) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-24   85.2  54.8    7.2e-14   51.5  25.9    2.1  2  MFS_1     Major Facilitator Superfamily
    9.8e-08   31.0  30.4    2.2e-06   26.5  18.6    2.4  2  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5  25.9   8.1e-18   7.2e-14      28     219 ..     112     288 ..      78     295 .. 0.72
   2 !   36.4  25.7     3e-13   2.7e-09       5     164 ..     287     453 ..     281     475 .. 0.89

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 8.1e-18
       MFS_1  28 gispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergrai 123
                 g+s+  + ++ +l ++g+a+++ p+  +  r +G ++++++g+l+  ++ l+++ fa+ +w l+l   vl G+g g+lf  ++a++ +wf+  +r++a+
  CCE28179.1 112 GASHLDYAFVGSL-SVGCALLVSPITTICVReLGTKPTMFAGVLFGTAS-LICAsFAHKMWhLFLTQGVLFGVGIGFLFIPSVAIVPQWFTT-KRSLAN 207
                 3566666666666.666666666666666666*****************.6666699**********************************9.****** PP

       MFS_1 124 gllsagfslGailgpllggllasslgWravfyilaivslla.fvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllf 219
                 g++ +g++lG +l   ++++++ +lg  ++f il+++++++  v+  +ll  ++ +   +s+             +  ++llk+p +  ll+  +++
  CCE28179.1 208 GFAVSGAGLGGLLYSFAAAAMIRNLGLGWTFRILGLLAFVVnTVC--ILLIKDRNKTIGSSQLAF----------D--TMLLKRPEF--LLLLGFGW 288
                 *****************************************6554..444444433333333333..........2..455555655..34444433 PP

  == domain 2  score: 36.4 bits;  conditional E-value: 3e-13
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.lllvlrvlqGlgaga 101
                 +++s+l++ +l+++l   +a++ g+ +se+ l+ +l+ lg++++ +++G++sdr Gr  +   + ll +l++l+ + + + ++ +l+++ +++G  ag+
  CCE28179.1 287 GWFSMLGYVVLNFSLA-NYANEIGLGASEAALVNALFNLGQGLGRPLIGFFSDRTGRINMSGSMTLLCGLFVLVVW-InAKVYgVLVFFAFICGTVAGT 383
                 5688999999999999.899************************************99999999999999945555.5588999*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivslla 164
                 ++++++ ++a+++  ++ +++++l+ +++++ +++  +++  +++  g       +++++yi+a+ +++a
  CCE28179.1 384 FWATIGPVVAEVVGLRNVPSGLSLVWLTIAIPSLFSEPIALQIVQGTGsylgtqlFTGLMYIAAATCMIA 453
                 ************************************9999999977777888888888888888888887 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   6.0   2.2e-06      0.02     227     340 ..      78     196 ..      76     201 .. 0.83
   2 !   26.5  18.6   2.4e-10   2.2e-06     105     368 ..     178     421 ..     178     424 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.2e-06
       MFS_2 227 lillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisal......lgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflv 319
                 +  ++++l++a + g++ +  ++ + y+ ++ +  +  l  +++++l      l++p+    ++ lg k t+++g l+  + l+++ ++  + + lfl+
  CCE28179.1  78 VCTACVCLINAHTWGLNSSYGVFLAHYIANETFPGASHLDYAFVGSLsvgcalLVSPITTICVRELGTKPTMFAGVLFGTASLICASFA-HKMWHLFLT 175
                 6678999******************9999955543333333444444455555************************************.99999**** PP

       MFS_2 320 llviagfgvgvaallpwsmla 340
                   v++g+g+g++++   ++++
  CCE28179.1 176 QGVLFGVGIGFLFIPSVAIVP 196
                 ********9999998888776 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 2.4e-10
       MFS_2 105 illrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervemrkke 203
                 +l+ + + ++ ip+v++vp+     + R+ ++++    + lgg+l ++ a +++  lg          ++  i  lL++++  ++ l  k+r      +
  CCE28179.1 178 VLFGVGIGFLFIPSVAIVPQW--FTTKRSLANGFAVSGAGLGGLLYSFAAAAMIRNLGL--------GWTFRILGLLAFVVNTVCILLIKDR------N 260
                 5889999*************9..8889**************************777776........3344455555555555555555655......5 PP

       MFS_2 204 kteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivl 302
                 kt   ++l +  +l   ++ + fl+ll ++ + +l+++vln  l+ y++ +   +s+a+++ +++ +++ lg pl+  +  r g+ n+  +++ll+ ++
  CCE28179.1 261 KTIGSSQLAFDTML---LKRPEFLLLLGFGWFSMLGYVVLNFSLANYANEIGLGASEAALVNALFNLGQGLGRPLIGFFSDRTGRINMSGSMTLLCGLF 356
                 66788888888775...78999***************************9988***********************************99999999988 PP

       MFS_2 303 lvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfiskl 368
                  ++v++  ++ + +++++++i g+ +g+++ ++   +a+vv    + +G +   ++ a+ s++s  
  CCE28179.1 357 VLVVWIN-AKVYGVLVFFAFICGTVAGTFWATIGPVVAEVVGLRNVPSGLSLVWLTIAIPSLFSEP 421
                 8888887.********************************99888888888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       927  (0.0517039); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3567.25
//
Query:       CCE28180.1  [L=286]
Description: related to Y.lipolytica glyoxylate pathway regulator GPR1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-89  297.2  16.0    6.5e-89  297.0  16.0    1.0  1  Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family


Domain annotation for each model (and alignments):
>> Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.0  16.0   3.6e-93   6.5e-89       2     207 .]      54     267 ..      53     267 .. 0.99

  Alignments for each domain:
  == domain 1  score: 297.0 bits;  conditional E-value: 3.6e-93
  Gpr1_Fun34_YaaH   2 ggtlnpg.lapvpkrkfaNPaPlgllafalttfvlslvnlgargitepnvvvglalfyGGlvqllaGiwefavgntFgatalssYGgFwlsyaa 94 
                      gg+l+pg ++p+++rkfaNPaPlgl+afalttfvls vn+++rg++epn+vv la++yGGl+qllaG+we+a+gntFgatalssYGgFw+sy++
       CCE28180.1  54 GGSLQPGlWKPYEHRKFANPAPLGLCAFALTTFVLSAVNTHTRGVKEPNIVVPLAFGYGGLIQLLAGMWEMACGNTFGATALSSYGGFWISYGI 147
                      799******************************************************************************************* PP

  Gpr1_Fun34_YaaH  95 ilipgfgilaaYeedeeelnnalglyllgwfiftfllllatlrstvalfllfffldltflllaigeltgsak.......vlkAggvfgiiaafl 181
                      +l+p++gi+a+    e ++++ lg++l+gwfift+llll+tlrstv++f+lf++ldl+fl+la+++++++ +       ++k+ggvfg++aafl
       CCE28180.1 148 LLTPNWGITATTGPYEGHVSSPLGFFLTGWFIFTTLLLLCTLRSTVMFFSLFLMLDLAFLFLACEQYANDMGnavaavaLQKTGGVFGFLAAFL 241
                      ************9999***************************************************999888999*99*************** PP

  Gpr1_Fun34_YaaH 182 awYnalaglatkensyftlpviplpk 207
                      awY+alagl +++ns+f++pv+++p+
       CCE28180.1 242 AWYCALAGLQDSSNSFFQVPVFHFPW 267
                      *************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2148.37
//
Query:       CCE28181.1  [L=496]
Description: uncharacterized protein CPUR_01655 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.015   15.6   0.3       0.03   14.6   0.3    1.5  1  Sigma_reg_N  Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.3   1.7e-06      0.03       8      46 ..      17      56 ..      16      65 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-06
  Sigma_reg_N  8 krksilrivlislivlllifvil.vvtllylaekegnklr 46
                 +r+ +lr+++is++v l++++++  vt++   ++ ++k++
   CCE28181.1 17 RRRRMLRNSCISVLVSLVVLFVFtAVTIQLAVQSHDSKHM 56
                 89********************999999988444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.21s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3758.17
//
Query:       CCE28182.1  [L=464]
Description: related to nicotinate phosphoribosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-57  193.1   0.1    3.2e-31  108.8   0.3    2.1  2  NAPRTase    Nicotinate phosphoribosyltransferase (NAPRTase) f
    1.4e-34  119.2   0.1    2.4e-34  118.4   0.1    1.4  1  NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N


Domain annotation for each model (and alignments):
>> NAPRTase  Nicotinate phosphoribosyltransferase (NAPRTase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   4.7e-27   4.2e-23       3     109 ..     183     294 ..     181     300 .. 0.96
   2 !  108.8   0.3   3.6e-35   3.2e-31     101     237 ..     311     440 ..     300     444 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 4.7e-27
                 EEE-TSTTSSSHHHHHHHHHHHHH........HHTTTEEEESBHHHHHHHT--B--HHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHCCHIIEEE CS
    NAPRTase   3 lhDFGtRrrsslesqeivvkalkk........ahlvnflGtdnvlaaakysikaaetsahealgkeqelsafrnnlkqfqkdaldlwvaiekgnlgiaL 93 
                  ++FGtRrr+++++q++v ++l k        + ++ ++Gt+nv++a++++i++++t+ahe++++ +++     +++++ + al  wv +++ +l+iaL
  CCE28182.1 183 TSEFGTRRRRDYHTQALVFRGLVKaskaaearGFPGKLSGTSNVHLAMRFGIPPVGTVAHEWFMGIAAIFD---DYTKATELALRHWVGCFGSDLAIAL 278
                 589*********************9****99999************************************9...************************* PP

                 CHCCTHHHHHCCS-CC CS
    NAPRTase  94 tdlvltdaflkdfrle 109
                 +d+++t++fl+ f l 
  CCE28182.1 279 SDTFGTREFLRAFSLP 294
                 **********999876 PP

  == domain 2  score: 108.8 bits;  conditional E-value: 3.6e-35
                 HHHCCS-CCHHHSEEEEE-SS-HHHHHHHHHHHHHCTCTTTCCCSEEEEESS-SHHHHHHHHHHHHHTTCEEEEEESHHHHSSECTTCTTTCCEEEEEE CS
    NAPRTase 101 aflkdfrleakaylgvRpDSGdpvevieklaahygstlnskgytkrlifsDgldvekiieilealkkkgfniaFGiGtnltqdlnrdtlefavkasaln 199
                 +++   +++a++++gvR+DSGdp e+++ l + y +  ++k  +k+++fsD+l++e+++e+ +  ++ gf+ +FG+Gt lt+d+ +  l+   k+ ++n
  CCE28182.1 311 DGT--TKTYAETFTGVRQDSGDPTEYTKMLRDYYDQQ-GIKE-KKTIVFSDSLNIERCLEYKKVSEDLGFQPTFGVGTFLTNDFVH--LKTGTKSAPMN 403
                 333..3556****************************.9986.799****************************************..9********** PP

                 EEEEEEEETTEETTBGGSSCCGSBGSGHHHHHHHHHHC CS
    NAPRTase 200 iviklvevnkdpvakisdrskkgrlgdkefvkllrtvf 237
                 ivikl ++ ++p++kisd+ +k++ gdk++++++++ +
  CCE28182.1 404 IVIKLSSAAGRPAIKISDNAGKNT-GDKDVLERVKRDL 440
                 ************************.******9999876 PP

>> NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.1   2.7e-38   2.4e-34       1     125 []      17     149 ..      17     149 .. 0.92

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 2.7e-38
  NAPRTase_N   1 LdtDlYkltmaqavfkkgpdvevvfelffRkkpfkgeyaivagleevieylenlrfteeeieyLkrklpyfkedfleyLrtfrfkpse.vavee...ee 95 
                 LdtDlYkltm++avfk +++v+v++ +++R++++k +++++++lee+i++l n+++++ee+ +L+++++y++ed+l+ L++f+++p+e v ++    + 
  CCE28182.1  17 LDTDLYKLTMQCAVFKFFRNVPVTYGFTNRTPEKKLSRTAYKWLEEQIRKLGNISLSNEEYIFLRTHCKYLTEDYLNHLKEFQLRPREqVFITFttdG- 114
                 8**************************************************************************************95555445540. PP

  NAPRTase_N  96 v.....vfpgepeirveGpwieaillEtplLaivn 125
                        + g+++ir++G+w ++il+E+p+La+ +
  CCE28182.1 115 AdtgadSDLGHIDIRIQGTWSDTILYEIPILALTS 149
                 2556678899*********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3723.93
//
Query:       CCE28183.1  [L=889]
Description: related to UTP4-U3 snoRNP protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-08   33.4   0.2      0.011   16.0   0.1    5.4  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    2.3e-07   31.4   5.4        1.3   10.0   0.9    7.4  7  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.029   14.3   0.0       0.12   12.3   0.0    2.0  1  PQQ          PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.042   2.5e+02      52      79 ..      36      63 ..      31      78 .. 0.78
   2 !   16.0   0.1   1.8e-06     0.011      26      83 ..     175     233 ..     150     287 .. 0.81
   3 ?   -2.9   0.0       1.4   8.5e+03      26      55 ..     313     340 ..     311     351 .. 0.76
   4 ?   -1.8   0.0      0.65   3.9e+03      36      59 ..     426     449 ..     400     474 .. 0.72
   5 ?   -0.2   0.0      0.21   1.2e+03      37      66 ..     479     508 ..     444     515 .. 0.79
   6 !    7.1   0.0    0.0011       6.8      15      62 ..     517     570 ..     506     579 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.042
  ANAPC4_WD40 52 lLavaysdgevrlldaesgkvvhslsvk 79
                  La++ ++g +++ + ++g  +++l + 
   CCE28183.1 36 RLAIGRANGDIEIWNPSNGAWLQELVIR 63
                 59****************9999887654 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.8e-06
  ANAPC4_WD40  26 gqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek...a 83 
                  +qrv    +++++ +  s+ ++   k+  v++sd+++r +++++g+++++++ +s+    +
   CCE28183.1 175 FQRVLVK-SPTKKAQMVSITFQSR-KVVIVGCSDSTIRAYNINNGHMLRKMTLGSDLtggS 233
                  4777766.6788888889999865.8999***********************999875551 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.4
  ANAPC4_WD40  26 gqrvwtleedkedsevrsLaWkpdgklLav 55 
                  + +vw+     +d+ v+++a  ++g++ +v
   CCE28183.1 313 WGKVWGR--RYHDHDVKAMATFEQGRISVV 340
                  7889988..788888888887777776555 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.65
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysd 59 
                  k ds+++s   +++g+lL v+++ 
   CCE28183.1 426 KGDSNISSATINQEGTLLFVSTAT 449
                  568888888888899999888764 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.21
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlld 66 
                  ++   ++++ +pdg+ L+v  + ++v + +
   CCE28183.1 479 TQLGASHVQLSPDGRRLCVIQEGSRVIMAS 508
                  55667788999********98888776655 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0011
  ANAPC4_WD40  15 edgellvfRlng......qrvwtleedkedsevrsLaWkpdgklLavaysdgev 62 
                  ++ +++++Rl+       ++v ++   + d++++++ ++ d ++Lava   g +
   CCE28183.1 517 STLSVRCHRLSRlrrpipRHVLNGGLGTYDRSITQVTFSADSRMLAVADLAGYI 570
                  5667888999888888888999999999********************988876 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.069   4.1e+02      25      38 .]      37      50 ..       6      70 .. 0.65
   2 ?    3.7   0.0     0.022   1.3e+02       2      24 ..     113     136 ..     112     166 .. 0.61
   3 ?    0.7   0.0      0.19   1.1e+03      22      37 ..     198     212 ..     182     213 .. 0.66
   4 !   10.0   0.9   0.00022       1.3       8      38 .]     230     262 ..     223     262 .. 0.81
   5 !    6.2   0.0    0.0034        20       8      33 ..     273     299 ..     266     304 .. 0.84
   6 ?   -3.4   0.0         3   1.8e+04      12      33 ..     325     348 ..     321     351 .. 0.55
   7 ?    1.4   0.0      0.11   6.7e+02      12      28 ..     548     564 ..     534     572 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.069
                EEEEETTSEEEEEE CS
        WD40 25 lasGsdDgtvriWd 38
                la G  +g + iW+
  CCE28183.1 37 LAIGRANGDIEIWN 50
                55675677777776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.022
                 EEEEEEESS.SSEEEEEEETTSSE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw 24 
                 ++ r+ +G+ ++++++a +p g+ 
  CCE28183.1 113 KPKRHASGQhGDIWCIAAQPQGDN 136
                 667777777689*****8877776 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.19
                 SSEEEEEETTSEEEEE CS
        WD40  22 gawlasGsdDgtvriW 37 
                 +  ++ G+ D t+r +
  CCE28183.1 198 KVVIV-GCSDSTIRAY 212
                 33355.644****966 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00022
                 ESS.SS..EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ss..vtslafspdgawlasGsdDgtvriWd 38 
                 tG  ++  v+s++  p+g+ + sG+  g + iWd
  CCE28183.1 230 TGGsKDiiVWSVKCLPNGNIV-SGDSTGQICIWD 262
                 444366767***********7.8*66*******9 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.0034
                 ESS.SSEEEEEEETTSSEEEEEETTSE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgt 33 
                   H s++ sl +s dg  ++sG++D+ 
  CCE28183.1 273 QSHkSDILSLTTSADGLAIMSGGMDRR 299
                 579888*****************9986 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 3
                 SEEEEEEETTSSE..EEEEETTSE CS
        WD40  12 svtslafspdgaw..lasGsdDgt 33 
                 +v ++a+   g+   ++sG+ D +
  CCE28183.1 325 DVKAMATFEQGRIsvVVSGGPDAN 348
                 455555555555544678876655 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.11
                 SEEEEEEETTSSEEEEE CS
        WD40  12 svtslafspdgawlasG 28 
                 s+t + fs d+++la +
  CCE28183.1 548 SITQVTFSADSRMLAVA 564
                 39***********9854 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     2e-05      0.12       2      27 ..     199     224 ..     198     230 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2e-05
                 EEEEEETTSEEEEEETTTCCEEEEEE CS
         PQQ   2 vvylgsadGylyAlDadTGkvlWrfk 27 
                 vv++g+ d +++A+++++G +l +  
  CCE28183.1 199 VVIVGCSDSTIRAYNINNGHMLRKMT 224
                 68999***************986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (889 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 6582.12
//
Query:       CCE28184.1  [L=476]
Description: related to PNG1-protein with de-N-glycosylation function (N-glycanase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-14   51.9   3.0    1.3e-13   50.9   3.0    1.5  1  Rad4            Rad4 transglutaminase-like domain
      4e-12   46.6   2.1    9.1e-12   45.4   2.1    1.6  1  Transglut_core  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> Rad4  Rad4 transglutaminase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   3.0   1.4e-17   1.3e-13      37     147 .]     292     400 ..     288     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 1.4e-17
                 SEEEEEEETTTTEEEEEESSSS-EESS--TTS--..TGGGS----EEEEE-TTS-EEE-HHHH-T.TCCCCHGGGSGGGSHHHHHHHHHHHHHH--S-- CS
        Rad4  37 vyWvEvfspekkkwisvdplvgstiekkeilepl..aekakqvlsYVvAfdsdgsakDVTrRYlsdysnsktkklrvekskeekkWfesvlrplekrnk 133
                 ++W+Ev+s+++++w++vd++       ++++ p+   e   + +sY vAf s  +a DVTrRY+++  ++ + +   +     ++ +  +++ ++  ++
  CCE28184.1 292 HVWTEVYSEHQRRWVHVDACE------EAWDSPRlyTEGWGKKMSYCVAF-SIDGATDVTRRYVRT-NEGAAERSQCP-----EEVMLYIMQEIKNMRR 377
                 79******************6......6999999888888999*******.8889*********95.99999999999.....7777777776666555 PP

                 -H...........HHHHHHHHHH CS
        Rad4 134 ert.........evdalEdaelr 147
                 ++          + d++Ed+elr
  CCE28184.1 378 SNMskeerfrleKEDNREDEELR 400
                 55556688888999999999996 PP

>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   2.1     1e-15   9.1e-12      16     112 .]     227     310 ..     208     310 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 1e-15
  Transglut_core  16 ekakaiyewvrknveysaprrtpgsrdaeavletgkGncedfaslfvallRalGipaRvvtgylsgeeekeqsvasedaHawvevyl.egygWvp 109
                       a +++ + ++  ++ a++r p+++d++ +l+t++G+  ++a++f++l+Ra+G   R+v +  +              H+w+evy  ++++Wv+
      CCE28184.1 227 CGALRVELYRCSAQNCGAYERFPRYADVWRLLQTRRGRVGEWANCFSMLCRAVGGRIRWVWNAED--------------HVWTEVYSeHQRRWVH 307
                     55555666655444444667****************************************88877..............********77888*** PP

  Transglut_core 110 lDp 112
                     +D+
      CCE28184.1 308 VDA 310
                     **7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3866.03
//
Query:       CCE28185.1  [L=515]
Description: uncharacterized protein CPUR_01659 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-08   32.4   7.4    8.8e-08   32.4   7.4    3.6  4  zf-RING_2     Ring finger domain
    5.7e-05   23.1   2.5    5.7e-05   23.1   2.5    3.2  3  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
     0.0013   18.8  11.3     0.0036   17.4   7.7    3.1  2  FANCL_C       FANCL C-terminal domain
     0.0037   17.2   6.0     0.0037   17.2   6.0    3.3  3  zf-RING_5     zinc-RING finger domain
     0.0087   16.1   5.0     0.0087   16.1   5.0    2.8  2  zf-RING_UBOX  RING-type zinc-finger
  ------ inclusion threshold ------
      0.014   15.2   6.1      0.014   15.2   6.1    3.0  3  zf-RING_4     RING/Ubox like zinc-binding domain
       0.21   11.5   9.6       0.29   11.1   9.6    1.1  1  TFIIA         Transcription factor IIA, alpha/beta subunit
        5.3    7.3  20.0      0.076   13.2   4.5    3.0  2  zf-C3HC4_4    zinc finger of C3HC4-type, RING
        7.6    6.8  12.2        6.7    6.9   3.6    2.5  2  FYVE_2        FYVE-type zinc finger


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.5       2.4   4.7e+03      21      29 ..      93     102 ..      85     107 .. 0.47
   2 !   32.4   7.4   4.4e-11   8.8e-08       1      44 []     159     210 ..     159     210 .. 0.74
   3 ?   -3.7   2.3       8.3   1.6e+04      13      29 ..     432     445 ..     428     453 .. 0.65
   4 ?    5.4   3.0     0.011        23      15      43 ..     468     495 ..     460     496 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.4
   zf-RING_2  21 CgHv.fhreC 29 
                 C H   + +C
  CCE28185.1  93 CPHAlKGNQC 102
                 4443223333 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 4.4e-11
   zf-RING_2   1 deCpICleel..ssadsvlll..pCgHvfhreClerw..lrssst....CPlCr 44 
                 d+CpIC++++  +s++s++++   Cg  +h+eC+e w  +++       CP+Cr
  CCE28185.1 159 DDCPICFSPFdaQSPESIVWCraACGQNIHQECFEMWakTKT--GsqvtCPFCR 210
                 58********55555556644346*************65333..34588****9 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 8.3
   zf-RING_2  13 adsvlllpCgHvfhreC 29 
                 ++s+++ pC+   +++C
  CCE28185.1 432 QSSMPVPPCS---CEDC 445
                 4556666774...7777 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.011
   zf-RING_2  15 svlllpCgHvfhreClerwlrssstCPlC 43 
                 s++   Cg++++++C    l ++ +C  C
  CCE28185.1 468 SACG-ACGKHICFSCSVSNLGEEVRCLRC 495
                 4444.4*********87778888888777 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1         1     2e+03      36      56 ..      89     106 ..      82     120 .. 0.54
   2 !   23.1   2.5   2.8e-08   5.7e-05      29      81 ..     155     213 ..     144     216 .. 0.81
   3 ?    1.4   0.9      0.16   3.3e+02      13      46 ..     408     441 ..     398     453 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1
                 TTCSTT....TTTS-EEEBTTS-EE CS
  zf-ANAPC11  36 psckfp....GddcplvlGkckhnf 56 
                 psc  p    G++       ckh++
  CCE28185.1  89 PSCSCPhalkGNQ-------CKHII 106
                 3333332222444.......55543 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 2.8e-08
                 SBTTS--TTCSTTTTTS...-EEEBT..TS-EEEHHHHHHHHHHHS.TSSB-TTTSSB- CS
  zf-ANAPC11  29 vsfdGtcpsckfpGddc...plvlGk..ckhnfhlhcilkwletet.skglcpmcrqtf 81 
                  + +  cp c +p d     ++v+ +  c  n+h+ c   w +t+t s+  cp+cr ++
  CCE28185.1 155 KAIEDDCPICFSPFDAQspeSIVWCRaaCGQNIHQECFEMWAKTKTgSQVTCPFCRSAW 213
                 5567779999999886422359998777**************998648899*****987 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.16
                 B--B.-SSSSB-TTT-SBTTS--TTCSTTTTTS- CS
  zf-ANAPC11  13 twswdvasddvcGicrvsfdGtcpsckfpGddcp 46 
                    w ++s  v     +s  G cp+  +p   c+
  CCE28185.1 408 HHFWSIPSAPVSSPSVASSPGFCPQSSMPVPPCS 441
                 5679999999999999999*********998886 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.28   5.5e+02      36      66 ..      66      96 ..      57     100 .. 0.77
   2 !   17.4   7.7   1.8e-06    0.0036       2      62 ..     158     210 ..     157     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.28
                GGHHHHHHHHSSS-TTT--EEE-TTT-SEEE CS
     FANCL_C 36 CLkeWlrslkesrqsfdvlfGeCPyCkkkis 66
                C  e ++   ++ ++++v +G+ P C+ + +
  CCE28185.1 66 CPGEVFELAGSTGNVYTVEIGRMPSCSCPHA 96
                55566666677788999999**9*9997755 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.8e-06
                 --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT- CS
     FANCL_C   2 eveCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrslkesrqsfdvlfGeCPyCk 62 
                 e +C+iC++ ++ ++  +++ C  + C++++H++C + W ++ + s+        +CP+C+
  CCE28185.1 158 EDDCPICFSPFDAQSPESIVWCR-AACGQNIHQECFEMWAKTKTGSQV-------TCPFCR 210
                 579*********99999999996.68*************999877653.......688886 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.3         3   5.9e+03      19      24 ..     101     106 ..      91     106 .. 0.83
   2 !   17.2   6.0   1.8e-06    0.0037       2      43 ..     161     210 ..     160     211 .. 0.88
   3 ?   -0.0   3.8      0.44   8.7e+02      18      42 ..     471     495 ..     460     497 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3
   zf-RING_5  19 sCgHif 24 
                 +C+Hi+
  CCE28185.1 101 QCKHII 106
                 799996 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.8e-06
   zf-RING_5   2 CnkCfekl....skeekfyltsCgHifCekClkkll....ekeavCpiCr 43 
                 C++Cf+++     ++   +  +Cg  ++++C+        +++++Cp+Cr
  CCE28185.1 161 CPICFSPFdaqsPESIVWCRAACGQNIHQECFEMWAktktGSQVTCPFCR 210
                 ********9875555559999***********99999999*********9 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.44
   zf-RING_5  18 tsCgHifCekClkkllekeavCpiC 42 
                  +Cg  +C +C   +l++e++C  C
  CCE28185.1 471 GACGKHICFSCSVSNLGEEVRCLRC 495
                 5898899999999999999999999 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   5.0   4.4e-06    0.0087       1      39 []     161     207 ..     161     207 .. 0.83
   2 ?   -7.1   5.8         9   1.8e+04      16      38 ..     473     492 ..     468     495 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.4e-06
  zf-RING_UBOX   1 CpIClelft..dP..lv..l.pCGHtFCreClw.elskslegafkCP 39 
                   CpIC+++f+   P  +v     CG ++++eC + + + + + +++CP
    CCE28185.1 161 CPICFSPFDaqSPesIVwcRaACGQNIHQECFEmWAKTKTGSQVTCP 207
                   *********9866764445446**********5469999999****9 PP

  == domain 2  score: -7.1 bits;  conditional E-value: 9
  zf-RING_UBOX  16 CGHtFCreClwelskslegafkC 38 
                   CG  +C +C     ++l+ +++C
    CCE28185.1 473 CGKHICFSCS---VSNLGEEVRC 492
                   6656888887...6666666666 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   6.1     7e-06     0.014       1      47 [.     161     213 ..     161     214 .. 0.78
   2 ?   -4.0   1.4         7   1.4e+04      17      21 ..     439     443 ..     436     443 .. 0.82
   3 ?    3.9   3.5     0.023        46       9      43 ..     461     495 ..     453     498 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7e-06
   zf-RING_4   1 cplCdeeldet.dkdlkpC..eCgyqiClfCyhrile...eeegrCPaCreeY 47 
                 cp+C++++d++  +++  C   Cg +i + C++   +    ++  CP Cr+++
  CCE28185.1 161 CPICFSPFDAQsPESIVWCraACGQNIHQECFEMWAKtktGSQVTCPFCRSAW 213
                 9*******8651689****888**999888877665522256999*****976 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 7
   zf-RING_4  17 pCeCg 21 
                 pC+C+
  CCE28185.1 439 PCSCE 443
                 9***6 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.023
   zf-RING_4   9 detdkdlkpC.eCgyqiClfCyhrileeeegrCPaC 43 
                 d   + +  C  Cg +iC  C    l  ee rC  C
  CCE28185.1 461 DTMATGISACgACGKHICFSCSVSNL-GEEVRCLRC 495
                 566667788989*********77666.579999999 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   9.6   0.00015      0.29      79     211 ..     270     406 ..     234     441 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
       TFIIA  79 a.........sqapastsqslpslvipagksvqslta.nssaataatfslpakleppvqipagvtlqtasgqlykvnv.qasgaqqiaaqplqqvvqqs 166
                 a         ++++ + + s p+l+ + ++s + +++   s +t + fs  ++  p     +g+  +       k +  + ++ +q+ ++ l+    ++
  CCE28185.1 270 AvgtlghpppEKMHLKRKRSSPELCSSPSSSSSGFSSpPGSGGTVDRFSRAVGKMP----ATGLLSPGRT---FKRHRnNRPSEEQVYQHTLELL-YSA 360
                 23444434333344445555566666555555555533555566666666666666....2233222222...2222225666666666655554.336 PP

       TFIIA 167 qgsaaqssvaalqaq.sqqaqalaepqqqlekqqqqqqqqqqqqqq 211
                 q + ++++++ + ++ s++   + +p qq ++qqqqqqqqqqqqq+
  CCE28185.1 361 QLPSSSHDTQYMPPGiSSHEDEIFMPTQQSTAQQQQQQQQQQQQQS 406
                 7888888899999998999999999999943222222222222221 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   4.5   3.8e-05     0.076       1      42 []     161     209 ..     161     209 .. 0.88
   2 ?   -1.2   7.6       1.2   2.4e+03      15      42 .]     472     495 ..     470     496 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
  zf-C3HC4_4   1 CPiCldYL..ekPvsl.....eCGhsfClsCisslqkepdgeqllCplC 42 
                 CPiC + +  + P s+     +CG ++ ++C + + k + g+q++Cp+C
  CCE28185.1 161 CPICFSPFdaQSPESIvwcraACGQNIHQECFEMWAKTKTGSQVTCPFC 209
                 9999998855679998666667*************************** PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
  zf-C3HC4_4  15 eCGhsfClsCisslqkepdgeqllCplC 42 
                 +CG  +C+sC  s   e+    ++C  C
  CCE28185.1 472 ACGKHICFSCSVSNLGEE----VRCLRC 495
                 5*********65443333....455555 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.4     0.022        44      50     103 ..     154     212 ..     145     216 .. 0.79
   2 ?    6.9   3.6    0.0034       6.7      67     105 ..     463     500 ..     442     507 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.022
      FYVE_2  50 aklgethCilCleefkllvnsk.rqCl.dCklnvCkkCsve...nkkekvwlCkiCsea 103
                 +k  e+ C  C ++f     ++ + C   C +n+ ++C      +k+ +   C  C+ a
  CCE28185.1 154 RKAIEDDCPICFSPFDAQSPESiVWCRaACGQNIHQECFEMwakTKTGSQVTCPFCRSA 212
                 5566889********99887765789637*********988765677777889999865 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0034
      FYVE_2  67 lvnskrqCldCklnvCkkCsvenkkekvwlCkiCseaRe 105
                 +++    C  C +++C +Csv+n  e+v  C  C   R+
  CCE28185.1 463 MATGISACGACGKHICFSCSVSNLGEEV-RCLRCAGRRM 500
                 4555689***************998876.5888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1764  (0.0983881); expected 358.6 (0.02)
Passed bias filter:                      814  (0.0454013); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 3728.73
//
Query:       CCE28186.1  [L=284]
Description: related to mannose-P-dolichol utilization defect 1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-23   82.3   4.6    4.2e-15   55.3   0.9    2.4  2  PQ-loop          PQ loop repeat
  ------ inclusion threshold ------
      0.011   16.6   1.3      0.019   15.8   1.1    1.5  1  ER_lumen_recept  ER lumen protein retaining receptor


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.9   4.7e-19   4.2e-15       1      60 [.      51     110 ..      51     111 .. 0.97
   2 !   28.4   0.1   1.1e-10     1e-06       4      58 ..     166     220 ..     163     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 4.7e-19
     PQ-loop   1 lseilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngfpps 60 
                 +s++lg+ +++ ++++++PQi+k  ++kS+eG+S+l++ll+++++++ l+y++ ngfp+s
  CCE28186.1  51 ISKGLGIGIIAASSIVKVPQIVKLVNSKSAEGVSFLSYLLETSAYLITLAYNVRNGFPFS 110
                 799******************************************************996 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 1.1e-10
     PQ-loop   4 ilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngfp 58 
                 +l+  + vl ++s++PQi+ + +   t++lS + ++  l+G++ ++++++ + ++
  CCE28186.1 166 YLQAGAGVLGVASKLPQIVAIQQQGGTGQLSAFAVFNYLAGSLSRIFTTLQEVDD 220
                 677888899****************************************998766 PP

>> ER_lumen_recept  ER lumen protein retaining receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   1.1   2.1e-06     0.019       1     134 [.      79     204 ..      79     216 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.1e-06
  ER_lumen_recept   1 svaGlSlktqilyalvfltryldlflylreeislyntlmkialillsiyiiylilvkfketyekekDtfklellivpslllallfhpg.ssktl 93 
                      s++G+S+ + +l   ++l+ +    +++r+    + t+ + alil + +ii +++ k++   +  +      l+ v+++ la lf ++  + ++
       CCE28186.1  79 SAEGVSFLSYLLETSAYLITLA---YNVRNGFP-FSTFGETALILGQNVIISVLVLKYSGRASMAA-----VLVAVLAAGLATLFAENiLDMKT 163
                      5778887776665555555552...33343333.457999*********99999989777777666.....7788888888887777779999* PP

  ER_lumen_recept  94 levlwtfsiiLesvAilPQlillqktgevesltshyvfalg 134
                      l++l + + +L   + lPQ++ +q++g   +l +  vf   
       CCE28186.1 164 LSYLQAGAGVLGVASKLPQIVAIQQQGGTGQLSAFAVFNYL 204
                      **************************998888888887554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2110.04
//
Query:       CCE28187.1  [L=593]
Description: uncharacterized protein CPUR_01661 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.19   11.8   1.1       0.82    9.8   0.4    2.4  3  Coleoptericin  Coleoptericin


Domain annotation for each model (and alignments):
>> Coleoptericin  Coleoptericin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.55   9.8e+03      79      97 ..     150     170 ..     126     178 .. 0.68
   2 ?   -2.8   0.0      0.34   6.1e+03      85     114 ..     222     255 ..     216     259 .. 0.55
   3 ?    9.8   0.4   4.6e-05      0.82      16      80 ..     286     348 ..     284     361 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.55
  Coleoptericin  79 nfp..lpgsqlptsitsnvek 97 
                    +fp  lpgs +p     +v++
     CCE28187.1 150 DFPidLPGSCFPLQADKDVDR 170
                    566336999999887777776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.34
  Coleoptericin  85 sqlptsitsnvekqgp.ntaat...inaqhktdr 114
                    s lp s   + e  g+ n+  t     +qhk+dr
     CCE28187.1 222 SPLPKSRHPETEYFGRpNSSHTprrQTSQHKADR 255
                    5555555555555553233333111567899998 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 4.6e-05
  Coleoptericin  16 ayvvperyyeieypeaaaveeervepfvspaelrsdedladedeveepvvyirerrslqpgapnf 80 
                     ++ p r y ++y +  a  + rv ++  p+ + s++++ +e  +++     r+r  + p ap++
     CCE28187.1 286 NHATPSRGYSPSYLDPHAKRSSRVRRHSQPTRYSSESSVEEERGLDHRE--PRHRHPISPPAPSI 348
                    67899********************************998888888654..68899999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 4210.01
//
Query:       CCE28188.1  [L=373]
Description: uncharacterized protein CPUR_01662 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.2   3.0       0.26   11.3   3.0    1.4  1  DUF1656   Protein of unknown function (DUF1656)
       0.53    9.3   1.3       0.71    8.9   1.3    1.1  1  Pes-10    Pes-10


Domain annotation for each model (and alignments):
>> DUF1656  Protein of unknown function (DUF1656)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.0   2.9e-05      0.26      31      47 ..      66      82 ..      63      83 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.9e-05
     DUF1656 31 arlglyrlvWhpaLfdl 47
                +r++l+r+ Wh+ Lf++
  CCE28188.1 66 HRIRLSRWPWHRRLFRA 82
                89*************85 PP

>> Pes-10  Pes-10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.3   7.9e-05      0.71     181     249 ..     191     266 ..     172     285 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 7.9e-05
      Pes-10 181 e......edseeddddiededeedesssstdsgiesedeElveereeeeeeea.erleaaigeilmvvLaqslksg 249
                 +      e    dd++++  d ed +sss+d  +es   El e   e++ +++ +++  ++ e   + L + l sg
  CCE28188.1 191 RtlrnlgERLARDDEEVDRPDREDGESSSDDDPFESVGVELNERLRERALRREaGDMSVVMDEEWEHWLKNALESG 266
                 155555555667779*************************988876666555505555555555556666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2854.83
//
Query:       CCE28189.1  [L=128]
Description: uncharacterized protein CPUR_01663 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1119.59
//
Query:       CCE28190.1  [L=404]
Description: probable histone acetyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-25   87.7   0.7    8.5e-25   86.6   0.7    1.6  1  Bromodomain      Bromodomain
    6.7e-08   32.8   0.0    1.2e-07   31.9   0.0    1.5  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    4.7e-07   29.8   0.4    1.5e-06   28.1   0.2    1.9  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0003   21.1   0.3    0.00064   20.1   0.1    1.6  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.28   11.2   0.0    1.5  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.7   2.4e-28   8.5e-25       3      84 .]     301     382 ..     299     382 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 2.4e-28
                  HHHHHBHTTTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHHH CS
  Bromodomain   3 kilsellehklaepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyelaek 84 
                  ++l++l +h++a pFl pv+++ + dyy+vik+P+dLst+++kle  +Y +++df  d+kl+f+N+rkyn+e+++++++a+k
   CCE28190.1 301 HLLNDLQNHQSAWPFLVPVNRDDVADYYDVIKEPMDLSTMENKLEADQYATPEDFTRDAKLIFDNCRKYNNENTPYAKSANK 382
                  6899***************************************************************************985 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   3.4e-11   1.2e-07      38     117 .]     116     191 ..      81     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 3.4e-11
                     EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEE.EEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  38 aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikki.vlaveedndaairlYeklGF 117
                     +++  e++G i++++     ++ a+i ++a+s++ + kG+G +L+ +l ++++    +  + +l + +dn  ai++++k GF
      CCE28190.1 116 VKKPLEVVGGITYRPFKG--RQFAEIVFCAISSDQQVKGYGAHLMSHLKDYVKATsDV--MhFL-TYADN-YAIGYFKKQGF 191
                     4555679****9999999..9**********************************666..5356.66777.******88**9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.2   4.3e-10   1.5e-06      40     108 ..     120     193 ..      89     207 .. 0.81
   2 ?   -1.1   0.0      0.47   1.7e+03      43      93 ..     203     254 ..     195     258 .. 0.67

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 4.3e-10
  Acetyltransf_10  40 gkivGvielrdgs.....hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklGFka 108
                       ++vG i++r  +     +i  ++++++++ +G+g+ L+ ++++++ k+ + + ++   a++ya+++++k+GF++
       CCE28190.1 120 LEVVGGITYRPFKgrqfaEIVFCAISSDQQVKGYGAHLMSHLKDYV-KATSDVmHFLTYADNYAIGYFKKQGFTK 193
                      567788866555556678999************************9.6667778*******************87 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.47
  Acetyltransf_10  43 vGvielrdgshisllfVdpeyrgqGigkaLleaveee.aekdgikleltvna 93 
                      +G+i+ ++g+ i  +   p  r   +g++Ll++ e   a+ + ++++ tv+a
       CCE28190.1 203 MGYIKDYEGGTIMQCSMLPRIRYLEMGRMLLKQKECVqAKIRAYSKSHTVHA 254
                      4777667777888888889999999999999875433233333333666666 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   1.8e-07   0.00064      13      75 ..     121     192 ..     104     193 .. 0.73
   2 ?   -3.5   0.0       4.1   1.5e+04      42      50 ..     229     237 ..     221     253 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.8e-07
                     EEEEEEEEEEES....TCTEEEEE-GGGTTSSHHHHHHHH....TTSEEE.....EE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  13 kivGfialslld....aeitrlaVdpeyrgkGiGraLlea....aekgii.....le.qlelnaekaikfYeklGFe 75 
                     ++vG i + + +    aei + a++ + + kG+G  L+ +    +    +     ++  ++ ++ +ai++++k GF+
      CCE28190.1 121 EVVGGITYRPFKgrqfAEIVFCAISSDQQVKGYGAHLMSHlkdyV----KatsdvMHfLTYADN-YAIGYFKKQGFT 192
                     56788888888888877888899****************844331....122332343334444.9**********8 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.1
                     HHHHHHHTT CS
  Acetyltransf_7  42 GraLleaae 50 
                     Gr Ll+ +e
      CCE28190.1 229 GRMLLKQKE 237
                     888988522 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.8e-05      0.28      20      81 ..     135     198 ..     130     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.8e-05
                 TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEE...E CS
        FR47  20 dggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfeki...e 81 
                 ++ e+    +  + + +G+g  l + l   +  +  +v+     +++ +i  ++k Gf+k    +
  CCE28190.1 135 QFAEIVFCAISSDQQVKGYGAHLMSHLKDYVK-ATSDVMHFLTYADNYAIGYFKKQGFTKEitlD 198
                 66788888899999************977765.566777788888889**********9975444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2973.70
//
Query:       CCE28191.1  [L=79]
Description: uncharacterized protein CPUR_01665 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-17   62.5  11.6    3.7e-17   62.4  11.6    1.0  1  Ost5            Oligosaccharyltransferase subunit 5
  ------ inclusion threshold ------
        6.7    6.5   7.0         13    5.6   1.0    2.2  2  FixS            Cytochrome oxidase maturation protein cbb3-ty


Domain annotation for each model (and alignments):
>> Ost5  Oligosaccharyltransferase subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4  11.6   4.1e-21   3.7e-17       1      73 []      15      79 .]      15      79 .] 0.98

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 4.1e-21
        Ost5  1 spfsppvppslqptlafvllligllltalfflyevtstkkkrslvkelllalvASlflGfGvvflllavGVYV 73
                spf p + +++q+ +af l+l+g+++t++f l+        rsl++ ++l+++ASl+++fG+v++++avGVY+
  CCE28191.1 15 SPFLPAIGKNSQFLVAFSLVLLGVFITGVFALN--------RSLISLTTLGIPASLAFAFGTVYMFCAVGVYI 79
                69****************************998........9******************************7 PP

>> FixS  Cytochrome oxidase maturation protein cbb3-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.0    0.0014        13       5      22 ..      27      44 ..      26      49 .. 0.84
   2 ?    4.4   0.6    0.0034        30       7      21 ..      58      72 ..      55      75 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0014
        FixS  5 lLiplSlllgllalaaFl 22
                +L+  Sl+l ++++ + +
  CCE28191.1 27 FLVAFSLVLLGVFITGVF 44
                79999***9999998766 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0034
        FixS  7 iplSlllgllalaaF 21
                ip+Sl ++++ + +F
  CCE28191.1 58 IPASLAFAFGTVYMF 72
                9*********99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 611.83
//
Query:       CCE28192.1  [L=323]
Description: uncharacterized protein CPUR_01666 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-73  245.2   0.0    7.2e-73  245.0   0.0    1.0  1  Rad1      Repair protein Rad1/Rec1/Rad17
  ------ inclusion threshold ------
      0.081   12.4   0.0       0.33   10.4   0.0    2.1  1  Rad9      Rad9


Domain annotation for each model (and alignments):
>> Rad1  Repair protein Rad1/Rec1/Rad17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.0   0.0   8.1e-77   7.2e-73       1     275 []       8     287 ..       8     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 245.0 bits;  conditional E-value: 8.1e-77
        Rad1   1 vfsAtlsnvseLatlLksiafkdkalvqissdGlkfivednrvlqaqafldkalFtsYtfenaqddedeedeeedsvsfevsLsallecLnifgkndss 99 
                 vf A+ ++ + L +lL++i+f+ +++vqi+++G++f ++ +rv+q++afldkalF+sY+++ ++    ++ e  + ++f++sL +lle L+ifg +d  
  CCE28192.1   8 VFRAVATSTRPLFQLLRCINFAPRVHVQITEEGIRFAADHSRVMQGVAFLDKALFSSYSLKLPPT---DDTEASELPNFQLSLASLLEVLQIFGAVDVA 103
                 699*********************************************************66666...55567899**********************9 PP

        Rad1 100 skessssraskv............asssakatscklsYkgeGsPLvliLeeagvtttcelsTyepeedldleldrqevvlkvilkselLhsalteLdat 186
                  k++++ +++ +            ++++  + +c+l Y++eG+P+++++ee gv+tt  l+Ty pe   d++++r+e+++k+i+ s  L +al e++ t
  CCE28192.1 104 AKAQKAEQDPYRsnlrnyradafsNQTLGISGTCTLMYSEEGDPFKITIEEYGVKTTAGLTTYVPELPEDIPFNREELSFKIIMPSRSLLDALAEISPT 202
                 9877777777779*********988899999******************************************************************** PP

        Rad1 187 .skklkilassekkapvfalsakgelgssevefpneksvlekfevsslsessessYkfallkkaakalalssKvslrmdeaGlLslqfmi 275
                  ++kl+i++++  + p+++l + g+lgss v+f+  +++le+f +   ++ s++ Ykf  +k+ ++a+++++K+slr d++G+Lslqfm+
  CCE28192.1 203 aPDKLTIVVTK--APPFLSLAGMGDLGSSAVDFARGRDLLETFTIA--DRWSQT-YKFDFVKNSTEAMRIANKISLRGDSQGVLSLQFMV 287
                 ***********..69*******************************..999999.**********************************6 PP

>> Rad9  Rad9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   3.6e-05      0.33      14     150 ..      31     204 ..      21     222 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.6e-05
        Rad9  14 elyleisedglelrtvnssrSayalvtlkksfFdky........ekevseqirckilvKsvlsvfr.............................slsa 75 
                  ++++i+e+g+++ + + sr   ++  l k++F++y        ++e se  ++++++ s+l+v++                             + s+
  CCE28192.1  31 RVHVQITEEGIRFAA-DHSRVMQGVAFLDKALFSSYslklpptdDTEASELPNFQLSLASLLEVLQifgavdvaakaqkaeqdpyrsnlrnyradAFSN 128
                 6899********966.99************************99999999999********99999887888777777777777777777777664444 PP

        Rad9  76 kektve.kvkisidekksrlivqllCkhgvkkthkisledsesl.kavfdkettpsklriksrvLsdllehfsssle 150
                 ++  +  ++++  +e+    ++++  ++gvk t  ++    e    + f++e    k+ ++sr L d+l++ s + +
  CCE28192.1 129 QTLGISgTCTLMYSEEGDPFKITIE-EYGVKTTAGLTTYVPELPeDIPFNREELSFKIIMPSRSLLDALAEISPTAP 204
                 4444432555555333333444443.889999999988777765589999999999999999999999998877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2372.17
//
Query:       CCE28193.1  [L=116]
Description: uncharacterized protein CPUR_01667 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 946.23
//
Query:       CCE28194.1  [L=614]
Description: uncharacterized protein CPUR_01668 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-12   48.2  11.7    1.4e-12   48.2  11.7    4.0  4  ANAPC_CDC26  Anaphase-promoting complex APC subunit CDC26
     0.0015   18.5   0.1     0.0015   18.5   0.1    4.3  3  SUIM_assoc   Unstructured region C-term to UIM in Ataxin3
  ------ inclusion threshold ------
        1.9    8.7  14.4       0.22   11.8   2.3    3.1  3  Hydin_ADK    Hydin Adenylate kinase-like domain


Domain annotation for each model (and alignments):
>> ANAPC_CDC26  Anaphase-promoting complex APC subunit CDC26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4       2.9   1.7e+04      35      46 ..     167     178 ..     157     187 .. 0.39
   2 !    4.9   2.8    0.0077        46      11      60 ..     219     272 ..     218     285 .. 0.58
   3 !    9.7   4.3   0.00025       1.5      20      47 ..     320     347 ..     308     376 .. 0.56
   4 !   48.2  11.7   2.4e-16   1.4e-12       1      52 [.     550     601 ..     550     611 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.9
  ANAPC_CDC26  35 rsqasastsqas 46 
                  ++++++++++ +
   CCE28194.1 167 ANEKRKANKSRR 178
                  222222222222 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0077
  ANAPC_CDC26  11 LtseDiaeyederqrqkeqa..aqqqrsqasastsqasdtdaddft..sedadp 60 
                  +t+e i ++ ++r+r+++ +   ++q+s++++ + ++s++++++++    ++d 
   CCE28194.1 219 VTQEQIRQFREARLRAEQLQleLEAQQSSDESVFETDSSRTSQGSAstALSSDH 272
                  588889999999666665551145566666666666666666655555334443 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00025
  ANAPC_CDC26  20 ederqrqkeqaaqqqrsqasastsqasd 47 
                  e+e+q++++ +++q +++ +++++ +++
   CCE28194.1 320 EEEQQQEQQLRQRQRQREREQDRWRQQS 347
                  2223333333333333333333333333 PP

  == domain 4  score: 48.2 bits;  conditional E-value: 2.4e-16
  ANAPC_CDC26   1 MLRRkPTtItLtseDiaeyede.....rqrqkeqaaqqqrsqasastsqasdtdadd 52 
                  MLRR+PTt+++t+eDia+yed+     r      a++++r+q+++ ++q++++++++
   CCE28194.1 550 MLRRPPTTLHITPEDIAAYEDRraseaR-----AAEADARAQQQQQEQQQQQQQQQQ 601
                  **********************666551.....444444444444444444443332 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   2.4      0.15   8.7e+02      14      58 ..     219     261 ..     214     284 .. 0.70
   2 ?  -14.2  22.6         3   1.8e+04      34      50 ..     319     335 ..     305     357 .. 0.55
   3 !   18.5   0.1   2.6e-07    0.0015      30      46 ..     588     604 ..     440     611 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.15
  SUIM_assoc  14 ltsEeLrkrreaYFEKqeqqqqqqqqqqdppgqlshprekpttSs 58 
                  t E+ r+ rea      +q q     q+ ++++    + + tS 
  CCE28194.1 219 VTQEQIRQFREARLRA--EQLQLELEAQQSSDESVFETDSSRTSQ 261
                 599*********6655..444444444455555555555555554 PP

  == domain 2  score: -14.2 bits;  conditional E-value: 3
  SUIM_assoc  34 qqqqqqqqdppgqlshp 50 
                 q++ qqq+++  q  + 
  CCE28194.1 319 QEEEQQQEQQLRQRQRQ 335
                 22222222222222222 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 2.6e-07
  SUIM_assoc  30 qeqqqqqqqqqqdppgq 46 
                 q+q+qqqqqqqq++pg 
  CCE28194.1 588 QQQEQQQQQQQQQQPGA 604
                 56666666666666664 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.078   4.7e+02     101     152 ..      80     141 ..      32     151 .. 0.56
   2 ?   11.8   2.3   3.7e-05      0.22      31     149 ..     216     355 ..     209     365 .. 0.65
   3 ?    2.7   0.9     0.022   1.3e+02     118     141 ..     578     599 ..     539     613 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.078
   Hydin_ADK 101 sskiskkkktsvvsgkkkaesegaksqkqkekktseta...........qissspplaapiar 152
                 ++ +++ +  +v+  ++k++++++ ++  ++++ ++++           + s++pp+a+p  +
  CCE28194.1  80 TENAFQ-AVRDVLDYNTKHDASKTRNKTCTTTRIKTRSktrktwlfglyVKSTHPPAASPPVQ 141
                 233333.33344555666666666655555555555445666777888777777776665444 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.7e-05
   Hydin_ADK  31 DsvvleAisdgnssaGlrArelCaeaaieqaekekeeaaeeaekkegqlsvealvkktselssaaeekaasskiskkkktsvvsg.............. 115
                 D++v++    +  +a lrA +l +e   +q+ +e+  +++++++++g++s+     + s  s++ ++++  s++ +     vv++              
  CCE28194.1 216 DEMVTQEQIRQFREARLRAEQLQLELEAQQSSDESVFETDSSRTSQGSASTALSSDHLSLCSNSPSQSMPFSMTMDPMDHAVVHKdfslpmreredftl 314
                 55665555556677899******9999999999999999999988998887777777775555544445555555555555555567777777777777 PP

   Hydin_ADK 116 .......kkkaesegaksqkqkekktseta.....qissspplaap 149
                        ++++e++  + q+q+e+     +     q+ss+pp++ p
  CCE28194.1 315 frqqqeeEQQQEQQLRQRQRQRER-----EqdrwrQQSSQPPPTPP 355
                 655433222222222233333333.....14556699999988764 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.022
   Hydin_ADK 118 kaesegaksqkqkekktsetaqis 141
                 +ae++   +q+q+e+++++++  +
  CCE28194.1 578 AAEADARAQQQQQEQQQQQQQ--Q 599
                 222222222222222222221..1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2438  (0.135981); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.41
# Mc/sec: 4508.22
//
Query:       CCE28195.1  [L=710]
Description: probable protein FR, involved in hyphal branching [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-10   41.2   1.3    4.5e-10   40.4   1.3    1.4  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   1.3   2.5e-14   4.5e-10       7     204 .]     106     452 ..     100     452 .. 0.66

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 2.5e-14
                  ESBTB....TTCCTHHHHHHHHH...........HHHHHHTTESEEEEESTSSSSS.....................HHHHHHHHHHHHHHHH..... CS
  Metallophos   7 gDlHl....algggqlddllkll...........ddllreekpdlvllaGDlvdrg.....................dlekellellaalvky..... 63 
                  +D+++    ++ g +++    ++           + l+r+ +pd v+++GDl+d+g                     + ek++++ + +++ +     
   CCE28195.1 106 ADPQItdphSYPGRPWPLNPLTVlvtdnymrrgyRALQRQLRPDSVFFLGDLFDGGrewktrqgaqfvdpqwggrrsETEKKWVKTWHRKYGEdfwla 203
                  5555555543333444433333333544444444555777899*******************************999444555555533333344444 PP

                  ...........................TSEEEEEC-TTS...CHHHHHHHHHHHHHHHHHHHEHH......HCEEETSEEEEEETTE.........EE CS
  Metallophos  64 ...........................pipvylllGNHe...gfeeellnkygylgifsepwrsd......aevfnnlplaslgsgs.........lk 116
                                             ++ v+ l+GNH+   g ++ ++ + ++++ f+e++r d              +++ +s s          +
   CCE28195.1 204 eykrfsdiffkpfsseggtvpgpyqrgRKLVAGLPGNHDlgfGAQIQVPVRDRFSAFFGETNRVDvvgnhtI------VSVDTVSLSadtsaykdaHN 295
                  4455777777777788999988888877777*********99888899999999999988888773333332......22222222233322244445 PP

                  EEEEESECEEE............THHHHHHHHHHHSCHHHHCC........HHHHHH.HHHHTTCSEEEEEESSESS..................... CS
  Metallophos 117 vlllhGgspel............lvsldklgslnleleapepg........dewlkd.lekrekadwvivlgHsply..................... 172
                  +  ++G   ++             ++l  +++++++l   ++            l+d  ++   + ++i+l+H+pl                      
   CCE28195.1 296 LKPIYGPVHDFldevpvlkrklaYEELGVWHGVDRDLKLHHKVedvnsadlSRVLRDpGSDAVADLPTILLTHVPLFrppgtpcgplrehwppstkkq 393
                  55555552222444455556666556666666666666555446666666666666699999999********************************* PP

                  ..........................CSSSCSCCHHHHH...........HH.HHHTTESEEEEESSSSE CS
  Metallophos 173 ..........................rgsgylfgdeale...........dl.lkkygvdlvisGHtHvy 204
                                            +                        l +k ++v +v+sG++H y
   CCE28195.1 394 ssrgkddgsgesttrddrnaisisagY-----------QysnvlseadsvSLvKKVGNVVHVFSGDDHDY 452
                  **6666665555555555555555553...........05555555555566699999**********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5091.09
//
Query:       CCE28196.1  [L=1658]
Description: uncharacterized protein CPUR_01670 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.46
# Mc/sec: 10837.36
//
Query:       CCE28197.1  [L=255]
Description: probable translation initiation factor eIF-4E [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-54  183.1   0.1    3.8e-54  182.8   0.1    1.1  1  IF4E      Eukaryotic initiation factor 4E


Domain annotation for each model (and alignments):
>> IF4E  Eukaryotic initiation factor 4E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.8   0.1   2.1e-58   3.8e-54       1     159 []      53     235 ..      53     235 .. 0.95

  Alignments for each domain:
  == domain 1  score: 182.8 bits;  conditional E-value: 2.1e-58
                 EEEEEEEEEEE-TTT--SS-SGGG-EEEEEEEEHHHHHHHHHHS--GGGB-SSEEEEEEETT--SSTTSHHHHS-EEEEEEE-----..HHHHHHHHHH CS
        IF4E   1 pLkskWtlwfdsksksksenyeeslkkvatfstveeFwslynnlkkpsklkvksdyhlFkkgikPmWEdpankkGGkwvirlkkkek..ldrlWeelll 97 
                 pL+skWtlwf++ ++ k +n+++ lk+v+tf++veeFw++ynn+ ++s+l  ksdyhlFk g++P WEdp+nk+GGkw++++k+k    +drlW ++++
  CCE28197.1  53 PLQSKWTLWFTKPPSGKGDNWNDLLKEVITFDSVEEFWGVYNNVAPVSELALKSDYHLFKAGVRPEWEDPQNKHGGKWSYQYKEKRSidVDRLWLQVMM 151
                 89********77777*******************************************************************7733346********** PP

                 HHHTT-SS--..-SEEEEEEEE-SSEEEEEEEES-T.....................T-HHHHHHHHHHHHHT--------EEE CS
        IF4E  98 aligeqleee.edeicGvvvsvRkkedrisiWtrda.....................sdeekvekigeklkevlelpeekkley 159
                 ++ige+le+e + e++Gv+v+vRk ++ri +Wt+++                     + ++ +++ig+++k+vlelp++ ++e+
  CCE28197.1 152 SAIGETLEDEdDGEVMGVIVNVRKGFYRIGVWTQTTgkhipgrgdgdfaggkgrspeKGKDILMSIGRRFKAVLELPSNAEVEF 235
                 *******988568*****************************************9977899******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1929.68
//
Query:       CCE28198.1  [L=578]
Description: related to malonyl CoA synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-68  229.9   0.0    5.8e-68  229.4   0.0    1.2  1  AMP-binding    AMP-binding enzyme
    1.9e-12   48.0   0.5    6.2e-12   46.3   0.5    2.0  2  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.4   0.0   6.5e-72   5.8e-68       2     404 ..      13     435 ..      12     440 .. 0.82

  Alignments for each domain:
  == domain 1  score: 229.4 bits;  conditional E-value: 6.5e-72
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHH.HTTS..STT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTES CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLr.slGv..kkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseak 96 
                  e+  ++ p+ +a++ s++g+++TY+el   v r+   +  + G    +g+r+a+l++ns+++vv+lla+l a a++vp++p+++ +el+yil++s+a+
   CCE28198.1  13 EAISKHEPESTAVIHSASGRRFTYGELLGDVYRARERFVdASGKrdLQGERIAFLVENSYDYVVTLLAALAARAIAVPMSPAFPDPELQYILDHSQAS 110
                  66678899*******99**********************8889944479************************************************* PP

                  EEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHH CS
  AMP-binding  97 vliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkle 194
                  +l+   +s+ +++++++ a  +  ++  +l+    +  +++ +++++ ++    ++ e  +p    +++YTSGTT kPKGV + + +++a+++sl   
   CCE28198.1 111 LLV--SSSKFASQARQVLA-GPLEAEPRHLEL---P--KHVGGRQGAGDA---AVTLEGSDPGRAGLMLYTSGTTSKPKGVLIPQSAVTAQAHSL--V 195
                  ***..55555666666555.334444444443...2..234444444443...34667899******************************9997..3 PP

                  HCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHH............HHHHHHHT-SEEEEEHHHHHHHHH.CCCHH.C... CS
  AMP-binding 195 trfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpkll............lelieklkvtviagvPrvlealle.sgalk.a... 275
                  + ++  ++d +l++lpl+hi g i +++++l++G+++ ++ ++++  ++++             ++ +k kvt++++vP+v+ +ll+ +++l      
   CCE28198.1 196 EAWEYAPSDHLLHVLPLHHIHGTINAVITPLFAGSSIEFMFPFNP--NAVWtrlaapflpadgDAATAKPKVTFFTVVPTVYSRLLStHKSLPpDlqq 291
                  4577789*********************************99998..34454556777787775677789***************9988777644544 PP

                  .HHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEE.CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEE.......TTS CS
  AMP-binding 276 .akkakdlsslrlvllggeplspellrffralfge.evlegYGlTEttgvvtv.lpleedkkklgsvGkplpgvevkivDeetgepvp.......dge 363
                    ++a + + +r+ ++g ++l+  +  ++++l  +  +le YG+TE ++++++ l  + +++   svG+plp v+++++D +t++ +p       +g 
   CCE28198.1 292 aCREAVSPQNMRVNISGSAALPTPIKSAWHDLSHGnVLLERYGMTEVGMALSCgL--DFSDRIDASVGWPLPSVQARLMDVDTNQVIPpgqdldpHGR 387
                  3222223334888889****************998889*************9543..444557889*********************95555554333 PP

                  E..EEEEEEETTS-SEBTT-HHHHHHHEEE.....TCC.EEEEEEEEEE CS
  AMP-binding 364 e..GellvrgpgvmkgYlkkpeataeafds.....egr.wlrTGDlgrl 404
                  +  Ge+ +rgp++++ Y+++peata+af+s     + + w++TGD++ +
   CCE28198.1 388 PrsGEIQLRGPTIFQEYWRNPEATASAFVSdpddtQ-GpWFKTGDVAIR 435
                  488**************************7787643.66*******976 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         2   1.8e+04      41      56 ..     284     299 ..     266     304 .. 0.65
   2 !   46.3   0.5   6.9e-16   6.2e-12       1      76 []     483     560 ..     483     560 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2
                    -HHHHHHHHHHHHT-T CS
  AMP-binding_C  41 aleeeLkahvrkelgp 56 
                    +l+ +L++ +r+++ p
     CCE28198.1 284 SLPPDLQQACREAVSP 299
                    3777888888888766 PP

  == domain 2  score: 46.3 bits;  conditional E-value: 6.9e-16
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---...---HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg...sealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evE  l+s p+V eaaVv++p +++G+ ++a+Vvl+ g   ++  + e ++ ++ +l+ y+ p+ +++v  +p+++ GK
     CCE28198.1 483 EVERELLSLPQVLEAAVVAIPSAKWGQKVAAVVVLD-GdvvQKWSPLEMRRALKPRLANYKIPQVMKVVGHIPRNAMGK 560
                    8**********************************5.555324499******************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4392.58
//
Query:       CCE28199.1  [L=108]
Description: uncharacterized protein CPUR_01673 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 789.36
//
Query:       CCE28200.1  [L=128]
Description: uncharacterized protein CPUR_01674 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-29  100.3   0.8    7.5e-29   99.8   0.8    1.2  1  BolA      BolA-like protein


Domain annotation for each model (and alignments):
>> BolA  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.8   4.2e-33   7.5e-29       3      76 .]      17      96 ..      15      96 .. 0.93

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 4.2e-33
        BolA  3 ealkpehlevedeShkhagha....eaggetHFkvvivseaFegkslvarhRlvyalLkeelakg..iHALslktktpee 76
                +a++p++le++++Sh h++h+    +++ etHF++vi+s+ F+ k +  rhR+vyalL++e+a++  iHAL+lkt tpee
  CCE28200.1 17 AAFNPQTLEIYNDSHLHSHHKamqgSTSRETHFRLVITSDVFQSKMQPTRHRMVYALLRDEMAREggIHALQLKTLTPEE 96
                79******************99987667**********************************66446***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1476  (0.0823247); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1001.55
//
Query:       CCE28201.1  [L=702]
Description: uncharacterized protein CPUR_01675 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.6   0.1       0.61   10.3   0.1    2.2  2  DUF4115   Domain of unknown function (DUF4115)


Domain annotation for each model (and alignments):
>> DUF4115  Domain of unknown function (DUF4115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   3.4e-05      0.61      42      68 ..     369     395 ..     365     400 .. 0.85
   2 ?   -1.6   0.0      0.18   3.1e+03      10      19 ..     677     684 ..     642     693 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.4e-05
     DUF4115  42 ltiGnagavevsvnGkpvdllgyargn 68 
                 l +Gna+a+++s+ G++++l+  ++ +
  CCE28201.1 369 LAAGNAAATQISATGQALPLSAAQKSD 395
                 678******************976554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.18
     DUF4115  10 WveVrdadGk 19 
                 W++V+  +Gk
  CCE28201.1 677 WIRVQ--HGK 684
                 44444..444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 5521.17
//
Query:       CCE28202.1  [L=2463]
Description: related to phosphatidylinositol 4-phosphate 5-kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-32  111.3   0.1    1.1e-23   83.9   0.2    2.6  2  PIP5K       Phosphatidylinositol-4-phosphate 5-Kinase
    1.4e-25   89.9   0.0    2.2e-25   89.2   0.0    1.2  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
    3.5e-14   52.7   9.5    9.1e-14   51.3   9.5    1.8  1  FYVE        FYVE zinc finger


Domain annotation for each model (and alignments):
>> PIP5K  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.2   1.8e-27   1.1e-23       9     168 ..    2241    2408 ..    2234    2411 .. 0.85
   2 !   25.9   0.0   8.9e-10   5.3e-06     221     272 ..    2408    2462 ..    2405    2463 .] 0.89

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 1.8e-27
                  ----SSS--EEEETTSSEEEEEE-HHHHHHHHHHHHHHHHHHTT-T....T--S--EEEEEEEE.E.....TTEEEEEEEEE-SS-TTS--SEEEEE CS
       PIP5K    9 sseGkSgsffylteDkkfiiKtitksevkflrkllpeYyehvkenp....nsLltrfyglhrvklk.....ggkkvrfvVmenlfptdkeiheryDL 96  
                  s  Gk +s+f  t D+++i+K+++  e + ++++ p+Y++ ++e       s++++++g+++v +k        k  +++ enlf+ d++ ++ +DL
  CCE28202.1 2241 SRGGKTKSVFLKTLDDRLILKSLSPIETSAFLRFAPSYFSIMAEALfhdlPSVIAKMLGFFQVIIKnpstgIDIKLDLLITENLFY-DRSPTRIFDL 2336
                  5689**************************************975555569************77655544444559********6.56669***** PP

                  -S--TT-S--HHHHTSSS-EEEHHHHHHHST...EEE-HHHHHHHHHHHHHHHHHHHHTTB-S-EEEEEEEB-- CS
       PIP5K   97 KGstvgReakkkeeekkektlkDlDliekkek..lklgkekreelleqlekDvefLeslnimDYSLLlGihnse 168 
                  KGs  +R+ +++ e  ++++l D +++e   +  l   +++++ l + + +D+ fL+++n+mDYSL++++ +++
  CCE28202.1 2337 KGSMRNRKIQSTGE--QNEVLLDENMVEYIYEspLFAREHSKKLLRASVWNDTLFLARQNVMDYSLMIAVDEER 2408
                  ********996544..456799999999865577888999999999************************5443 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 8.9e-10
                  EEEEEEEEE----B--------------...--------TTHHHHHHHHHHHHHH CS
       PIP5K  221 kevyylgiIDiLqkynlkKklehalksl...kkdkksisavpPkeYaeRFlkfie 272 
                  ++ + +giID++ +y++ Kkle+++k        ++  +++ PkeY++RF + + 
  CCE28202.1 2408 RKELVVGIIDCIRTYTWDKKLESWIKDRgfaGGGRNRPTVTSPKEYKSRFREAMA 2462
                  556889********************999997778889************99885 PP

>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   3.7e-29   2.2e-25     158     365 ..     855    1064 ..     829    1072 .. 0.88

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 3.7e-29
                  EECSCCC.EECCCCEECECTTSEEESEEEESS--SSTTSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTE CS
  Cpn60_TCP1  158 keldlgr.ikvvkieggsledselveGlvldkgvlspdmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgv 253 
                  +++dl   +k++ki gg+  d+  v G+v+ k+++ ++m+++++n++++l+++++e+++         +    l+ + ++e+++l+ ++++i+++  
  CCE28202.1  855 EDMDLRHyVKLKKIPGGRPGDTCYVSGVVFTKNLALKSMSRRITNPRIVLVTFPIEYQRH-------QQHFMSLQPVIEQEKEFLRVVVQRITNLRP 944 
                  566776679*************************************************99.......4466789999******************** PP

                  CEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHHT--EBSCGGGGG.CGC-EEEEEEEECCETT.......CCEEEEECESSSSXEEEEEE CS
  Cpn60_TCP1  254 nvvvcqkgiddlalhflakngilalrrvkkkdlerlakatGatavssledlt.peelGtakkveeekigs.......ekttiieevksgkiatillr 342 
                   v+++qkg++ +al++l +++i ++ +vk + +e +a++  a+++ sl+ l  p  +G ++ +e++++ +       ++++++++++ +  +ti lr
  CCE28202.1  945 HVLLAQKGVSGVALQYLSDANISVAYNVKDTVIEAVARCAEAEIIESLDMLAlPVRVGRCSAFEVRTFVNnyypgrkKSYIFLSGCRPELGCTITLR 1041
                  ****************************************************7799*******999986534444448899999************* PP

                  ESTCCCHHHHHHHHHHHHHHHHH CS
  Cpn60_TCP1  343 gatdtvldeieraiedAlnvvkn 365 
                  gat + l+ i+   e  + vv n
  CCE28202.1 1042 GATGESLKHIKHIMEFMVYVVYN 1064
                  **********9987766666665 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   9.5   1.5e-17   9.1e-14       3      66 ..     425     486 ..     423     488 .. 0.92

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 1.5e-17
                 --...--SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EEGGGTEEEEEEE-HHHHHHH CS
        FYVE   3 wkddsevkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvallekeaeeksvrvCkeClael 66 
                 w++d++vk+C  C+ +F+++rr+hhCr+CG ++ +kC++  +    +   + s+rvCk+Cl+ +
  CCE28202.1 425 WMKDDTVKECFLCQIPFTAFRRKHHCRTCGCIFDSKCTTVVSGE--RFGVQGSLRVCKNCLEVI 486
                 **************************************998854..59999*********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.14u 0.28s 00:00:01.42 Elapsed: 00:00:00.48
# Mc/sec: 15573.85
//
Query:       CCE28203.1  [L=115]
Description: uncharacterized protein CPUR_01677 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 903.51
//
Query:       CCE28204.1  [L=121]
Description: uncharacterized protein CPUR_01678 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-11   44.5   0.0    1.5e-11   44.3   0.0    1.2  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   8.3e-16   1.5e-11       2      60 ..      23      81 ..      22     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 8.3e-16
                HHHHTTTECTT..EEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHH CS
      Cyt-b5  2 leelskhngkn..dlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekd 60
                ++el+k ng +   ++vai+gkVYDv+    + pGg  +++ +aGkDa++a+   + +++d
  CCE28204.1 23 KDELAKANGTEggTCYVAIKGKVYDVTGNSAYQPGG--SYNVFAGKDASRALGMTSTKPED 81
                789*****77668**************888888888..89**********99776655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 973.53
//
Query:       CCE28205.1  [L=535]
Description: uncharacterized protein CPUR_01679 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-09   37.8   0.4       0.23   11.8   0.7    4.6  3  TPR_12    Tetratricopeptide repeat
    0.00059   19.7   0.0          2    8.7   0.0    4.4  4  TPR_7     Tetratricopeptide repeat
    0.00077   19.4   2.4      0.085   13.0   0.1    4.6  5  TPR_2     Tetratricopeptide repeat
     0.0023   17.7   3.5        2.8    7.9   0.3    4.2  4  TPR_1     Tetratricopeptide repeat
     0.0093   15.6   0.0      0.015   14.8   0.0    1.3  1  FANCI_S1  FANCI solenoid 1


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00097       3.5      20      73 ..     167     221 ..     165     225 .. 0.92
   2 !   11.6   0.0   7.2e-05      0.26       5      66 ..     360     418 ..     356     424 .. 0.78
   3 !   11.8   0.7   6.4e-05      0.23      37      75 ..     474     511 ..     445     513 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00097
      TPR_12  20 deAlellekaleiarrl.lGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                   Al+++++a+++a+++ l+p +++ + +++  + ++++ ++y+  ++ le +l+
  CCE28205.1 167 KLALKFYKQAMRQATEVgLDPFSDEFLGIRIQVAAWLEKVNNYQSSIDVLESVLR 221
                 679***********9999*********************************9997 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.2e-05
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrly.r.algryeeAle 66 
                 ++  l+  + r+ +++ A  l+ +al ++     p h   a +++nL+ ++ + +++++ +Al+
  CCE28205.1 360 IMESLGRDYERRSQFQLAVPLFFQALKVC---DSPCH--RAVIMNNLSACFaQqQQKQPTAALD 418
                 44479999999999999999999999999...55779..9999999999974424466666655 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 6.4e-05
      TPR_12  37 lGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                  ++d ++ a +l+n +++  +lg+ + A++ +e+++a+ 
  CCE28205.1 474 EECD-EACAVALCNWADVAAMLGKKDLARQKYEQCIAMS 511
                 3343.5889***************************996 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.088   3.1e+02      16      31 ..     167     180 ..     165     190 .. 0.78
   2 ?    1.4   0.0      0.12   4.1e+02       8      28 ..     202     220 ..     198     231 .. 0.84
   3 !    8.7   0.0   0.00055         2       4      32 ..     363     391 ..     361     394 .. 0.90
   4 ?    0.9   0.0      0.16   5.8e+02       3      30 ..     485     512 ..     483     517 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.088
       TPR_7  16 eeAielyeqsLaltkd 31 
                 + A+++y+q  a++ +
  CCE28205.1 167 KLALKFYKQ--AMRQA 180
                 5699*****..88754 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.12
       TPR_7   8 lysrlGdyeeAielyeqsLal 28 
                 + +++++y+  i+++e +  l
  CCE28205.1 202 WLEKVNNYQSSIDVLESV--L 220
                 56889**********984..4 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00055
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdp 32 
                  L+r y+r+ +++ A+ l+ q+L ++++p
  CCE28205.1 363 SLGRDYERRSQFQLAVPLFFQALKVCDSP 391
                 599******************99887765 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.16
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltk 30 
                 +n a++   lG+ + A + yeq++a+ +
  CCE28205.1 485 CNWADVAAMLGKKDLARQKYEQCIAMSD 512
                 55555555589999999*****988865 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.24   8.8e+02      17      29 ..     166     178 ..     165     181 .. 0.81
   2 ?   -1.8   0.0       1.3   4.8e+03      10      28 ..     202     220 ..     198     223 .. 0.80
   3 ?    0.4   0.0      0.25   9.1e+02       7      29 ..     364     386 ..     359     390 .. 0.85
   4 ?   -1.6   0.0       1.1     4e+03      17      30 ..     450     463 ..     446     466 .. 0.77
   5 !   13.0   0.1   2.4e-05     0.085       2      30 ..     482     510 ..     481     513 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.24
       TPR_2  17 yeeAleafekAle 29 
                 ++ Al+++++A +
  CCE28205.1 166 PKLALKFYKQAMR 178
                 5679*******87 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
       TPR_2  10 ayyklgdyeeAleafekAl 28 
                  ++k ++y+  ++ +e +l
  CCE28205.1 202 WLEKVNNYQSSIDVLESVL 220
                 678889***9999998776 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.25
       TPR_2   7 lGlayyklgdyeeAleafekAle 29 
                 lG+ y+++ +++ A+ +f +Al+
  CCE28205.1 364 LGRDYERRSQFQLAVPLFFQALK 386
                 99************999988887 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.1
       TPR_2  17 yeeAleafekAlel 30 
                 ++ Al++ ++A ++
  CCE28205.1 450 LDAALNWAQQAHRH 463
                 68899999999875 PP

  == domain 5  score: 13.0 bits;  conditional E-value: 2.4e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAlel 30 
                  al+n++++++ lg+ + A++ +e++++ 
  CCE28205.1 482 VALCNWADVAAMLGKKDLARQKYEQCIAM 510
                 589***********************986 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.068   2.4e+02      16      27 ..     165     176 ..     165     179 .. 0.85
   2 !    5.4   0.0    0.0048        17       7      30 ..     364     387 ..     363     390 .. 0.91
   3 ?   -2.0   0.1         1   3.7e+03      10      23 ..     406     419 ..     405     419 .. 0.86
   4 !    7.9   0.3   0.00078       2.8       1      29 [.     481     509 ..     481     513 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.068
                 -HHHHHHHHHHH CS
       TPR_1  16 kydeAleyyekA 27 
                 +++ Al++y++A
  CCE28205.1 165 DPKLALKFYKQA 176
                 5688*******9 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0048
                 HHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekALel 30 
                 lG  y +  +++ A+  + +AL++
  CCE28205.1 364 LGRDYERRSQFQLAVPLFFQALKV 387
                 788899****************97 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1
                 HHHHTT-HHHHHHH CS
       TPR_1  10 ayfklgkydeAley 23 
                 a ++++++  Al++
  CCE28205.1 406 AQQQQKQPTAALDA 419
                 6789*******985 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.00078
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALe 29 
                 a al+n + +   lgk d A + ye+++ 
  CCE28205.1 481 AVALCNWADVAAMLGKKDLARQKYEQCIA 509
                 689***********************997 PP

>> FANCI_S1  FANCI solenoid 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.3e-06     0.015     127     190 ..     355     422 ..     349     444 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.3e-06
    FANCI_S1 127 eelelvvekllrsl.kklklqElPpLvyQlLlLsakgskkvi.LeglikyFaeqdkk..dresakeee 190
                  el  ++e l r   +  + q   pL +Q L+++ + +++++ ++ l + Fa+q++k    + +++e+
  CCE28205.1 355 TELGAIMESLGRDYeRRSQFQLAVPLFFQALKVCDSPCHRAViMNNLSACFAQQQQKqpTAALDASEA 422
                 555555555655553344445557************9987776************9954233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3873.05
//
Query:       CCE28206.1  [L=768]
Description: probable Double Strand Break repair protein mus-11 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-71  240.8   0.0    2.3e-71  240.2   0.0    1.3  1  Cut8         Cut8, nuclear proteasome tether protein
    1.2e-57  194.1   0.0    1.8e-57  193.6   0.0    1.3  1  Rad52_Rad22  Rad52/22 family double-strand break repair prote


Domain annotation for each model (and alignments):
>> Cut8  Cut8, nuclear proteasome tether protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.2   0.0   2.6e-75   2.3e-71      38     239 ..      14     217 ..       1     219 [. 0.93

  Alignments for each domain:
  == domain 1  score: 240.2 bits;  conditional E-value: 2.6e-75
        Cut8  38 k.....krsrtpkisgqpLplsrlLetLdkeqLqsllqslveehpeleqevskkapkpsiesllelLkekkenilkslPykgdkeddyaYlRvkphLle 131
                 +     k+ rt++i+gqpL+l+rlLetLd ++L+  l +++e+hp++eqev++ ap+ps++s+l++L+e+++++++++Py g+++ +y+Y Rvk++Ll+
  CCE28206.1  14 EpmslvKKLRTNEITGQPLSLPRLLETLDAKELRASLGRICERHPSIEQEVVAGAPRPSVQSSLNVLREYQKKVNEAVPY-GETSAEYTYHRVKEPLLA 111
                 0234569999999*******************************************************************.99**************** PP

        Cut8 132 FlncLsDfilnflppnetnlstsLkfldeatklvhkLPnfdnqshnyykdkcyeqlsnawltvikeaakdgggllkkleleeweekLkkhneesegklq 230
                 F+ ++sDf++++lppnet+ s+sL+fld+at+l+h+LPn+d qs+ ++k+++y+++s+aw++vi+ea k+ggg+  +l+ ++w ++L +hn++s+g+l+
  CCE28206.1 112 FITAISDFTPHYLPPNETQASKSLDFLDGATNLIHDLPNWDPQSYCHHKENAYDEMSRAWALVISEAGKRGGGI--NLHSGGWPQSLTRHNDRSGGRLS 208
                 *************************************************************************9..*********************** PP

        Cut8 231 kvlellksk 239
                 ++++++ + 
  CCE28206.1 209 SAMTAMANS 217
                 ****99876 PP

>> Rad52_Rad22  Rad52/22 family double-strand break repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.6   0.0     2e-61   1.8e-57       1     150 [.     281     430 ..     281     433 .. 0.98

  Alignments for each domain:
  == domain 1  score: 193.6 bits;  conditional E-value: 2e-61
  Rad52_Rad22   1 kietlqskLekklgpeyvsqregksgkkvaylegskviqlaNevFgfnGWsseiesievdeieeeqegqrysvkaealvrvtlkdGtyrediGfgtat 98 
                  +i+++ skL+k+lgpey+s+r g++g++v+yl+++kvi laNevFgfnGWss+i++i+vd+ +e+ ++qr+s++++++vr+tl+dGty+ediG+g+++
   CCE28206.1 281 EIASIASKLDKQLGPEYISSRSGPGGSRVHYLTAEKVIGLANEVFGFNGWSSSIQNIQVDFADENPQTQRVSIGLSVIVRITLRDGTYHEDIGYGSIE 378
                  578999******************************************************************************************** PP

  Rad52_Rad22  99 nvpskgeafekakKeAvtdAlKrAllqfgnvlGnclydleqekkvkklkked 150
                  n+++k+ afekakKe++td++KrAl++fgnvlGnc+yd +  k+v+k+k ++
   CCE28206.1 379 NAKGKAIAFEKAKKEGTTDGMKRALRNFGNVLGNCIYDTDFVKQVTKVKAQP 430
                  ********************************************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5896.35
//
Query:       CCE28207.1  [L=437]
Description: related to NOP13-may be required for processing of pre-18S rRNA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-16   58.1   0.1    4.2e-10   39.3   0.0    3.3  2  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
     0.0022   18.1   0.2        0.1   12.7   0.1    2.5  2  RRM_7        RNA recognition motif
     0.0036   17.1   0.0          2    8.2   0.0    2.3  2  RRM_Rrp7     Rrp7 RRM-like N-terminal domain
     0.0053   16.7   0.0      0.017   15.1   0.0    1.8  2  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
  ------ inclusion threshold ------
       0.11   13.4  17.3        2.3    9.1   1.2    3.7  4  GEN1_C       Holliday junction resolvase Gen1 C-terminal doma
        1.1    9.7  19.0       0.78   10.1   1.7    3.1  3  PBP1_TM      Transmembrane domain of transglycosylase PBP1 at
        2.5    6.8   7.2        1.8    7.3   0.4    2.2  2  Glypican     Glypican


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.1e-05     0.079       1      69 [.      91     173 ..      91     174 .. 0.77
   2 !   39.3   0.0   1.7e-13   4.2e-10       1      57 [.     217     274 ..     217     280 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.1e-05
                 EEEESETTTSSHHHHHHHHHT.TS......CEEEEEEEEE........TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk.fG......piksiklvrd........etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +++gnLp+++   eLk+++ +  G      +i++ik+++         ++ ++kgfa+++F++     +A++ l +++lg+r+l
  CCE28207.1  91 VWIGNLPFTIQATELKQWLVDnSGgvitneSITRIKIPTLkepgrdktQKPSNKGFAYIDFNDVGPKVAAIA-LSETTLGQRNL 173
                 68999999999999999998744412222257778888766555556666689***********99999999.99999999987 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 1.7e-13
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAle 57 
                 +fVgn ++ +te+++++ F+k+G+i  +k+ +   tgk kg++ V+F  +++A+ A++
  CCE28207.1 217 IFVGNMSFKTTEDDVRRNFEKCGEIDWVKVATFeDTGKCKGYGWVKFREPDAAAWAVK 274
                 8************************9999999999******************99987 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.053   1.3e+02       4      59 ..      91     153 ..      88     176 .. 0.63
   2 !   12.7   0.1     4e-05       0.1       1      59 [.     214     265 ..     214     282 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.053
       RRM_7   4 vFvGGlPiDiteeelkatfkef.gkv.......lvdwPkkaeskkkaaenskaakgyvflvfed 59 
                 v++G lP  i+ +elk+ +    g v       ++  P  +e  +  ++++ ++kg++++ f+d
  CCE28207.1  91 VWIGNLPFTIQATELKQWLVDNsGGVitnesitRIKIPTLKEPGRD-KTQKPSNKGFAYIDFND 153
                 7899999999999988765433122200000003333433333333.33566788999988875 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4e-05
       RRM_7   1 srkvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfed 59 
                 srk+FvG +    te+++ + f++ g+  +dw k a  + + +      kgy ++ f +
  CCE28207.1 214 SRKIFVGNMSFKTTEDDVRRNFEKCGE--IDWVKVATFEDTGK-----CKGYGWVKFRE 265
                 8************************97..79998877655543.....46777766655 PP

>> RRM_Rrp7  Rrp7 RRM-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0024       6.2      29      72 ..      76     119 ..      75     131 .. 0.83
   2 !    8.2   0.0   0.00079         2      34      66 ..     203     244 ..     198     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0024
    RRM_Rrp7  29 kkHqtknndeessrslFlvNlPiettletlkkffqkvalgatie 72 
                 kk + k+++++s++ +++ NlP + +  +lk+ + + + g++ +
  CCE28207.1  76 KKNKDKKDKKRSEHGVWIGNLPFTIQATELKQWLVDNSGGVITN 119
                 667777888889********************998887776655 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00079
    RRM_Rrp7  34 knndee....ssrslFlvNlPiettletlkkffqkv.....a 66 
                 ++n++e     sr +F+ N+  +tt + ++++f+k       
  CCE28207.1 203 NKNKKEvdpnASRKIFVGNMSFKTTEDDVRRNFEKCgeidwV 244
                 33333346669**********************997544443 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   3.4e+03      28      45 ..     123     153 ..     116     163 .. 0.63
   2 !   15.1   0.0   6.6e-06     0.017      14      53 .]     228     273 ..     225     273 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
  Nup35_RRM_2  28 vkhyvp.............kevsvmyvkfes 45 
                  +++ +p             +++ ++y+ f +
   CCE28207.1 123 TRIKIPtlkepgrdktqkpSNKGFAYIDFND 153
                  5555555555566666665678889999975 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 6.6e-06
  Nup35_RRM_2  14 ielVlehFasfGeIvkhyvp......kevsvmyvkfesekdaekAL 53 
                  +++V++ F+ +GeI+   v       k + + +vkf+ +++a+ A+
   CCE28207.1 228 EDDVRRNFEKCGEIDWVKVAtfedtgKCKGYGWVKFREPDAAAWAV 273
                  579*************99999999999999************9997 PP

>> GEN1_C  Holliday junction resolvase Gen1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.2   0.00091       2.3      47      86 ..      55      93 ..       8      99 .. 0.76
   2 ?    5.8   0.1    0.0097        25      52      86 ..     188     219 ..     126     236 .. 0.77
   3 ?    7.1   2.7    0.0038       9.8      27      88 ..     274     331 ..     270     344 .. 0.63
   4 ?   -2.5   0.0       3.9   9.9e+03      48      58 ..     361     371 ..     336     410 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00091
      GEN1_C 47 reglaededdedeeeeeeasakkkrkkkpydPseperiWi 86
                ++g a d+dd+++ +  e+s +kk+k k+   ++++ +Wi
  CCE28207.1 55 KSGNADDKDDDEDTD-GEDSGDKKNKDKKDKKRSEHGVWI 93
                566777777777765.889999999999999999999998 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0097
      GEN1_C  52 ededdedeeee...eeasakkkrkkkpydPseperiWi 86 
                 e+e       e   +  +++++++kk++dP+++ +i +
  CCE28207.1 188 EKEP------EaveNGLDKQSNKNKKEVDPNASRKIFV 219
                 2222......122257899999************9987 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0038
      GEN1_C  27 aqlVaidlsgeegkreepagreglaededdedeeeeeeasakkkrkkkpydPseperiWipe 88 
                 + +V+++++ e +++ ++ ++e+++ d+ d +  e    + + k+k ++    ++ + W+ +
  CCE28207.1 274 KGFVKVKEAVETEEDFQEGKDEDDEGDNSDASGGE----NDNGKKKGQQPKQFKTRKWWVNR 331
                 56788888888888877666666666666666554....44444444444555666777755 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 3.9
      GEN1_C  48 eglaededded 58 
                 +g+a d  d  
  CCE28207.1 361 QGDAGDGGDAV 371
                 33333333333 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.8    0.0011       2.9      40      70 ..      59      88 ..      36      97 .. 0.64
   2 ?   -3.8   0.2       6.6   1.7e+04      56      56 ..     202     202 ..     183     217 .. 0.49
   3 ?   10.1   1.7    0.0003      0.78      31      73 ..     285     328 ..     270     335 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0011
     PBP1_TM 40 ddeedDdddddeeeevprkgkkkkpprkkrr 70
                 d++dDd+d d e+   +k+k+kk  +k++ 
  CCE28207.1 59 ADDKDDDEDTDGEDSGDKKNKDKK-DKKRSE 88
                456677777777777788877776.444443 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.6
     PBP1_TM  56 p 56 
                 +
  CCE28207.1 202 S 202
                 1 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.0003
     PBP1_TM  31 rdddydd..eyddeedDdddddeeeevprkgkkkkpprkkrrwlw 73 
                  ++d+++  + dde d  d    e++  +k k+++p++ k r +w
  CCE28207.1 285 TEEDFQEgkDEDDEGDNSDASGGENDNGKK-KGQQPKQFKTRKWW 328
                 488888854445555555544555555555.67776676766655 PP

>> Glypican  Glypican
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.4   0.00069       1.8     439     503 ..      26      87 ..      14     123 .. 0.75
   2 ?    2.7   1.5     0.018        45     414     518 ..     180     294 ..     167     333 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00069
    Glypican 439 pevevditkpdvvirqqimkLkkitnrlkaaaegndvdfqddeddssGsgsGeacedekvkkelk 503
                  e+evd + p+   ++   +Lkk ++      ++ + d +dd++d++G++sG++ +++k+ k+++
  CCE28207.1  26 DEIEVDLALPEPPSKRARRALKKGKSLP--L-KSGNADDKDDDEDTDGEDSGDKKNKDKKDKKRS 87 
                 6788888888888888888888766542..2.23456888999999*******877776666554 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.018
    Glypican 414 CWnGeekgrYlqevvgdglanQinnpevevditkpdvvirqqimkLkkitnrlkaa.aegndvdfq.....ddeddssGsgsGe........acedekv 498
                    G   ++ ++e+v++gl++Q+n    evd ++   +i    m+ k+ +  ++   ++  ++d       +d   ++G g  +             +v
  CCE28207.1 180 SFQGRPAKEKEPEAVENGLDKQSNKNKKEVDPNAS-RKIFVGNMSFKTTEDDVRRNfEKCGEIDWVkvatfEDTGKCKGYGWVKfrepdaaaW----AV 273
                 677888888899***********999888887776.677777888888888776541556666665553333333334444333544422220....22 PP

    Glypican 499 kkelkiva.satdtpaeeakg 518
                 k+ +k+++  +t+++++e k 
  CCE28207.1 274 KGFVKVKEaVETEEDFQEGKD 294
                 222222222233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3015.78
//
Query:       CCE28208.1  [L=700]
Description: uncharacterized protein CPUR_01682 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.063   13.0   0.0        0.1   12.3   0.0    1.3  1  T4-gp15_tss  T4-like virus Myoviridae tail sheath stabiliser


Domain annotation for each model (and alignments):
>> T4-gp15_tss  T4-like virus Myoviridae tail sheath stabiliser
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.8e-06       0.1      42      85 ..     209     252 ..     193     279 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-06
                  EES-HHHHHHHHHHHSS-SSHHHHHTTTTT-SEEEEEEEEEEE- CS
  T4-gp15_tss  42 tvaskehfvaklnkqtelnsdedvakvetllprinldlvdfsyd 85 
                  tv+ k h++++++k+t++  + ++a ++++ p + ld      d
   CCE28208.1 209 TVSKKSHWLVRIEKWTKVLCQHNMASISAITPAVVLDAFASYLD 252
                  899*******************************9997665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5146.86
//
Query:       CCE28209.1  [L=183]
Description: uncharacterized protein CPUR_01683 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-58  194.5   4.4    7.1e-58  194.3   4.4    1.1  1  ORMDL     ORMDL family


Domain annotation for each model (and alignments):
>> ORMDL  ORMDL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.3   4.4   3.9e-62   7.1e-58       1     136 []      38     172 ..      38     172 .. 0.99

  Alignments for each domain:
  == domain 1  score: 194.3 bits;  conditional E-value: 3.9e-62
       ORMDL   1 nkntewvnskglwviyiviilllkllllalpgvseevawtltnlvhnlvtyillHwikGtPfetadqgeydeltlWEQidegeqytptrkfLtvvPivL 99 
                 n n++w+++kg+w+i+iv+i++lk++++++pgvs+e++wtltn+++++++y+++H+++G Pfe+ ++g++d+l++WEQid+g+qytpt+kfL++vPivL
  CCE28209.1  38 NLNANWTSAKGAWTIHIVLIAALKIFYDIIPGVSQETSWTLTNMTYMFGSYLMFHYVRGVPFEF-NSGAFDNLNMWEQIDNGAQYTPTKKFLLSVPIVL 135
                 88**************************************************************.********************************** PP

       ORMDL 100 fllsthytkydlelfvinlivllvvvipKlpfmhrvR 136
                 fllsthyt+ydl++f+in++++l vvipKlpf hr+R
  CCE28209.1 136 FLLSTHYTHYDLAYFIINFLAVLAVVIPKLPFSHRMR 172
                 ***********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1339.48
//
Query:       CCE28210.1  [L=692]
Description: uncharacterized protein CPUR_01684 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2682  (0.14959); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                       243  (0.0135535); expected 17.9 (0.001)
Passed Fwd filter:                        97  (0.00541023); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.69u 0.40s 00:00:03.09 Elapsed: 00:00:00.63
# Mc/sec: 3289.13
//
Query:       CCE28211.1  [L=236]
Description: related to palI protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-18   66.5   6.9    3.1e-18   66.2   6.9    1.1  1  SUR7          SUR7/PalI family
     0.0066   16.7   4.2     0.0066   16.7   4.2    2.5  2  L_HMGIC_fpl   Lipoma HMGIC fusion partner-like protein
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.011   15.6   0.0    2.5  3  TMEM52        Transmembrane 52
       0.12   12.0   0.2       0.18   11.3   0.2    1.2  1  LYRIC         Lysine-rich CEACAM1 co-isolated protein family
       0.54    9.9   2.9        1.4    8.5   1.2    2.1  2  Wzy_C         O-Antigen ligase
       0.75    9.6  12.4      0.059   13.2   6.9    1.9  2  Trp_oprn_chp  Tryptophan-associated transmembrane protein (Tr
        4.7    8.2   0.0        4.7    8.2   0.0    3.3  4  EphA2_TM      Ephrin type-A receptor 2 transmembrane domain


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   6.9   1.2e-21   3.1e-18       4     211 ..      10     189 ..       7     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 1.2e-21
        SUR7   4 illflslaalilllfailgsiknstpltsiylskfdlsgldlaqigladvysfgvwgyCdnsdvnytkCskpkagypfdpl.eelnsesngkvdlPsnl 101
                 i +f++++al+l++++ +       +++ + ++++dl     +    a+  +fg++gyC   + + ++C+++++gy+  +l   l+ +  +      n+
  CCE28211.1  10 IGTFCLVVALVLFIVVTIT----APVVNGLSMMHVDLGRNAAS----AEEVTFGTFGYC-VRSSRGDDCTSSRVGYNPAALmRRLDGTPFND--ASANT 97 
                 5678888888886666554....55888999999999944444....7999********.99**************9887558888888755..78999 PP

        SUR7 102 rktlsklnnltkalfilhiialvlsfislvvgllaicvspdnsrllsflnlllsvlsflatllaalldtllfvfvrkkinlkefgikaslglkflafaW 200
                  k+l+        +++lh++al l fi+    ll ++   ++  ++s+l++l+s+++fla+l+a ++d ++  +v++++     + +   + k+ + +W
  CCE28211.1  98 AKALTR-------VMVLHPVALGLCFIAS---LLLCI---SSGVVGSLLASLVSLAAFLAALVAMICDFVALGIVKRHV-----NDHNVSHAKWGSGIW 178
                 999999.......99*******9988764...45554...45567*******************************999.....44445899******* PP

        SUR7 201 lalaaallvvi 211
                 l+l+aall+++
  CCE28211.1 179 LVLVAALLTLL 189
                 ********875 PP

>> L_HMGIC_fpl  Lipoma HMGIC fusion partner-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   4.2   2.6e-06    0.0066       3     122 ..      20     150 ..      11     156 .. 0.74
   2 ?    0.4   0.5      0.25   6.5e+02      68      96 ..     171     200 ..     157     208 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.6e-06
  L_HMGIC_fpl   3 vlWallslvaavlelvafvspeWlvgseesekagslglyerCkkesqevelecgryaldflaipssa..............wkaaavlvalgilllll 86 
                  vl +++++ a v++ +++++ + l+ +  s++++++g++ +C+  +++++++c+++   ++  + +                ka + +++l  + l+l
   CCE28211.1  20 VLFIVVTITAPVVNGLSMMHVD-LGRNAASAEEVTFGTFGYCV--RSSRGDDCTSSRVGYNPAALMRrldgtpfndasantAKALTRVMVLHPVALGL 114
                  6777888888888888888877.666777**************..33455555544433333333323345555555555567778888888888999 PP

  L_HMGIC_fpl  87 vlllslltlcrqsilkksvfkicallqlvaglllll 122
                   +++sll ++++ +++  +  +++l+ ++a+l+ ++
   CCE28211.1 115 CFIASLLLCISSGVVGSLLASLVSLAAFLAALVAMI 150
                  9*****************************998776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.25
  L_HMGIC_fpl  68 sawkaaavlvalgill.lllvlllslltlc 96 
                    w   + lv+++ ll ll   ++ +  +c
   CCE28211.1 171 AKWGSGIWLVLVAALLtLLGAGIVFVTCCC 200
                  457777777777777744444444444444 PP

>> TMEM52  Transmembrane 52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.7       1.1   2.8e+03      19      37 ..       8      26 ..       5      33 .. 0.70
   2 ?   -0.8   0.1      0.52   1.3e+03      11      35 ..     100     124 ..      92     131 .. 0.76
   3 ?   15.6   0.0   4.5e-06     0.011      11      66 ..     169     222 ..     160     228 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.1
      TMEM52 19 wyvwLilvivlllLlCglt 37
                 +++   ++v+l+L+ ++t
  CCE28211.1  8 HHIGTFCLVVALVLFIVVT 26
                5777777778888777665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.52
      TMEM52  11 aqaewvsLwyvwLilvivlllLlCg 35 
                 a ++ + L  v L l  ++ lLlC 
  CCE28211.1 100 ALTRVMVLHPVALGLCFIASLLLCI 124
                 4567777888999999999999994 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 4.5e-06
      TMEM52  11 aqaewvsLwyvwLilvivlllLlCgltasCvrfCclrkqqka.eeespparkpyevt 66 
                 ++a+w s   +wL+lv++ll Ll g   + v +Cc r  +++    ++ +++p+++t
  CCE28211.1 169 SHAKWGS--GIWLVLVAALLTLL-GAGIVFVTCCCGRESKSRrRRAANEPKEPWHMT 222
                 5666665..48999998888777.556677888888766554044555567888877 PP

>> LYRIC  Lysine-rich CEACAM1 co-isolated protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   7.2e-05      0.18      45      84 ..     178     217 ..     175     232 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.2e-05
       LYRIC  45 WviLlaaalgLlLllalWaavcggllkkkkarsaadrgae 84 
                 W++L+aa+l Ll   ++++  c g+ +k ++r+aa++ +e
  CCE28211.1 178 WLVLVAALLTLLGAGIVFVTCCCGRESKSRRRRAANEPKE 217
                 **********************998888777777666555 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.11   2.8e+02      23      34 ..      16      27 ..       5      76 .. 0.63
   2 ?    8.5   1.2   0.00057       1.4       5      58 ..     118     196 ..     110     236 .] 0.68

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
       Wzy_C 23 lvalivlliify 34
                +val++++++++
  CCE28211.1 16 VVALVLFIVVTI 27
                333333333222 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00057
       Wzy_C   5 lsllalflstsRsgiigllvalivlliifykrri.............................pfllllgilvgvilliilfv 58 
                  sll+++     sg++g l+a +v l++f+  ++                              +l+l+++l+ ++ + i+fv
  CCE28211.1 118 ASLLLCIS----SGVVGSLLASLVSLAAFLAALVamicdfvalgivkrhvndhnvshakwgsgIWLVLVAALLTLLGAGIVFV 196
                 34444444....44444444444444444444444444777888899999*****9988888888888888888888888877 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.81   2.1e+03      69      80 ..      16      26 ..       5      56 .. 0.47
   2 ?   13.2   6.9   2.3e-05     0.059      42     155 ..     106     213 ..      79     230 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.81
  Trp_oprn_chp 69 vvgvllalagag 80
                  vv+++l +  ++
    CCE28211.1 16 VVALVLFI-VVT 26
                  22222222.222 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.3e-05
  Trp_oprn_chp  42 apaltalAlvllAaavAvlavrglgrrvvgvllalagagaavaalslltdpadaaraaaaaatgvasaaaaveltawpvlalaggvllllagvllll 138
                      ++al+l  +A+++ ++   g++  +++ l+ la+++aa+ a+     +   ++ ++ +     +++++++  ++ +l+l++++l+ll++ ++++
    CCE28211.1 106 VLHPVALGLCFIASLLLCIS-SGVVGSLLASLVSLAAFLAALVAMICDFVALGIVKRHVND-----HNVSHAKWGSGIWLVLVAALLTLLGAGIVFV 196
                   44567888888887776655.5555566666666777666666665544444444444433.....35555666779*************9999999 PP

  Trp_oprn_chp 139 rarswpamssrYerpaa 155
                   +    ++++sr +r+a+
    CCE28211.1 197 TCCCGRESKSRRRRAAN 213
                   88655555555444443 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   1.2      0.23   5.8e+02       8      23 ..      11      26 ..       6      44 .. 0.66
   2 ?   -3.6   0.2         7   1.8e+04       7      18 ..     112     123 ..     106     126 .. 0.53
   3 ?   -0.3   0.4      0.79     2e+03       7      18 ..     140     151 ..     128     171 .. 0.53
   4 ?    8.2   0.0    0.0019       4.7       2      35 ..     178     211 ..     177     233 .. 0.60

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.23
    EphA2_TM  8 glvllvilvilvlvlv 23
                g ++lv++++l++v++
  CCE28211.1 11 GTFCLVVALVLFIVVT 26
                4455555555555443 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 7
    EphA2_TM   7 aglvllvilvil 18 
                 +gl+++ +l+++
  CCE28211.1 112 LGLCFIASLLLC 123
                 455555554443 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.79
    EphA2_TM   7 aglvllvilvil 18 
                 a+++  ++++i+
  CCE28211.1 140 AAFLAALVAMIC 151
                 333333333333 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0019
    EphA2_TM   2 iaaavaglvllvilvilvlvlvrrrsknrkqksd 35 
                  +++va+l++l+ + i+++ ++  r++++++++ 
  CCE28211.1 178 WLVLVAALLTLLGAGIVFVTCCCGRESKSRRRRA 211
                 5677888888887766666555444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1097  (0.0611858); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1739.90
//
Query:       CCE28212.1  [L=297]
Description: uncharacterized protein CPUR_01686 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 2198.07
//
Query:       CCE28213.1  [L=728]
Description: uncharacterized protein CPUR_01687 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.1e-117  391.4   0.0   9.5e-117  390.5   0.0    1.4  2  Med1      Mediator of RNA polymerase II transcription subunit


Domain annotation for each model (and alignments):
>> Med1  Mediator of RNA polymerase II transcription subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  390.5   0.0  5.3e-121  9.5e-117       2     414 ..     125     553 ..     124     554 .. 0.96
   2 ?   -3.3   0.1      0.19   3.4e+03     236     286 ..     565     639 ..     557     653 .. 0.61

  Alignments for each domain:
  == domain 1  score: 390.5 bits;  conditional E-value: 5.3e-121
        Med1   2 kvlqlLqekvsgrqvsreglerLarqlgLetfwdenn.klsektqtLsIAgssfyLeIdfeednkVkdVsLslagseaeqsgeereeAseiLlrdLr.. 97 
                 +++++L++  +g+ vs++ lerLa++ gLe +++e++  +++kt+tL IAgs+++L+I + ++n+V++ sLs++gs a+++ e++++A++iLlr+L+  
  CCE28213.1 125 TIINILSTT-KGL-VSEASLERLAQRIGLELLSEEQTtAGGRKTRTLAIAGSVIALDIVL-DNNIVQSASLSYHGS-ATSVAEHMDAAGQILLRNLTll 219
                 6899****9.9**.********************9999999*******************.8**************.99******************** PP

        Med1  98 .....ltkkldeFaanLerLarlDklsgdpklncfealegleesLqklsqlesksh.welekk..........deeleelglcssvGkptmhkkgrvGL 180
                      ltk+ld+Fa+n+erLa lDkls+ p+l+c+eal+g++ sL++l       h w+l+++          +++l+++++c ++G+p+mh+++rvGL
  CCE28213.1 220 pgqspLTKTLDSFASNFERLAGLDKLSIVPGLDCHEALAGIYSSLSRL-------HeWDLSNLrgedatkgrsEAYLTNVAMCCRHGRPAMHERDRVGL 311
                 ***************************99*******************.......9999999999999****99************************* PP

        Med1 181 sldYWveprrlldekek.kssslsgdeyelsekdsllenqekvwsiliecealkelgypplrvsknwislevekp...ekseslvldWlepeptl.... 271
                 + +YW++ r+++++    +              +s++++q+kvws+l +c+al+++g+ p+rvs+ wis+++  +    +  +++ldW+ep+ ++    
  CCE28213.1 312 AWQYWKQHRHVIPSADDaD-------------MSSWGAKQDKVWSLLLGCDALDGMGVSPVRVSDTWISEAITREdmsFSPPRTMLDWQEPPYVSlpqs 397
                 *************965422.............34699*********************************99999877788899*************** PP

        Med1 272 ...........qldslgsklpnarFvlkleppvpvplslaeelyrltglnmeqeees........ktatldaLvvpvengkstds.esrekrrrrqvls 350
                            q+d +++++p+++F+++++ppv++p++ +++ly + ++++++ +++        ++ t+d+L++p ++g + d+ e+r ++rrrq+l+
  CCE28213.1 398 ddnkdagmdllQPDLSTTRVPRVMFTVSFDPPVVLPQNDWARLYMCANIDPPNIQNEmiqrglppSPPTFDSLLFPFPPGIKVDPsEPRAISRRRQLLH 496
                 ********9988888***********************************9999888999****779******************************** PP

        Med1 351 klsedeegkelekshsytfqitkdlpglgitvkelpFshPrqlpeiLpiLRqyallstLlrscf 414
                      +++k++  +h++t++i+k+++++  tv+e+pFshPrql ++Lp+LRqya+lstLl+++f
  CCE28213.1 497 I---GSDDKTM--HHHNTLFIYKPIYSQ--TVTEMPFSHPRQLLDMLPLLRQYAFLSTLLENSF 553
                 9...8888888..9999***********..********************************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.19
        Med1 236 gypplrvsknwislevekp...........ekseslvldWlepeptl............qlds.lgsklpnarFv 286
                  +ppl +s+ + sl+ e +           +++  ++ d+++ ++t+            +++s ++s+  ++ + 
  CCE28213.1 565 KLPPLTSSSSSSSLSQEEKddgwllagtktKTKRDQLSDFMDVDSTSsghaehavlplrAATStSTSTHLDVILW 639
                 567776655555554444467777777776677777788888888887777777776663333355555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 5217.58
//
Query:       CCE28214.1  [L=409]
Description: related to methionyl-tRNA formyltransferase precursor, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-23   81.2   0.0      1e-22   80.7   0.0    1.2  1  Formyl_trans_N  Formyl transferase


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   5.8e-27     1e-22       2     179 ..      40     222 ..      39     224 .. 0.88

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 5.8e-27
                     EEEEEESESSHH..HHHHHHHHHHTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCCSCCCCCCCHHHHHHHHCTT-SEEEEES--S---H CS
  Formyl_trans_N   2 kivvlisgtgsn..lqalldalkkgsleadvvlvvsnkdkaaglekaeaasiptkvfeekkleprsqfeeelaeelkelkadlivlagymkllpk 94 
                     +i++ +s+++s+  l+al+++++ ++  ++ + vv  ++  +g++ +  ++ p k +++     r    + + +   +++ +liv+++y+ ++p 
      CCE28214.1  40 RILFCGSDKFSCpsLKALHQEMERKTGLVESIEVVVLPNMFQGRGMRHVEDGPCKSLAQDL-GLRLYERRTFEDWDLPVGTNLIVAVSYGVFIPA 133
                     89999***99975578889999999999******************999999999988765.444444556667778999*************** PP

                     HHHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--.SSSSTS-EEEEEE...EE--TT--HHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N  95 elvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvd.eelDtGailaqkk...veiiaedtkeeleqrvadaehkalve 179
                      +++  + + ln+HpSLLP  +Gaa+ + al++Gd+ tGv+ +++d   +D G ilaq+    ++i ++d + +l++ +a  + k+l++
      CCE28214.1 134 RILASAKYGGLNVHPSLLPDLHGAAPLHHALLRGDTHTGVSLQTLDdKAFDRGIILAQTPppgLPISPDDNLYSLKNNTAAHGAKMLIQ 222
                     **********************************************5579********9722257999************999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3094.11
//
Query:       CCE28215.1  [L=133]
Description: uncharacterized protein CPUR_01689 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       186  (0.0103743); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1008.23
//
Query:       CCE28216.1  [L=512]
Description: uncharacterized protein CPUR_01690 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-16   59.2   0.0    2.4e-09   37.2   0.0    2.2  2  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.1e-08   0.00019      21      74 ..     104     157 ..      86     161 .. 0.79
   2 !   37.2   0.0   1.4e-13   2.4e-09     136     236 ..     157     257 ..     152     264 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.1e-08
       RVT_2  21 ftkkkddlkevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeee 74 
                 ++k + ++k  +  +  v+     + gedyde+faP +r+d++rL+la  a ++
  CCE28216.1 104 YKKNEAAKKASRRGTTQVVIQVETVLGEDYDETFAPTVRMDTLRLFLATVAADD 157
                 55555555666666666666778899**********************887765 PP

  == domain 2  score: 37.2 bits;  conditional E-value: 1.4e-13
       RVT_2 136 vLkklgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakkfklkdlgkvskfLGieiaqeagg..iklsladyiakvvkkfelt 232
                  Lk  gf +s a   l+++ t    + + +y dd+  +++  ++l  +  +l ++f+ k lg+++k LG  ++++ g+  i l +++yi+++++kf +t
  CCE28216.1 157 DLKSWGFIQSLADPCLFTHPTKT--IKLLVYADDIAASAERKSELRWFNDTLRSRFNTKALGEIEKILGARVTRDRGNrtIYLDQEQYITSILNKFAFT 253
                 58889999999999999998655..55557*******************************************987652277899************** PP

       RVT_2 233 dakt 236
                 + k 
  CCE28216.1 254 NGKH 257
                 9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3698.86
//
Query:       CCE28217.1  [L=92]
Description: uncharacterized protein CPUR_01691 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 697.73
//
Query:       CCE28218.1  [L=372]
Description: uncharacterized protein CPUR_01692 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-61  207.2   0.1    1.8e-42  145.6   0.0    2.1  2  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase
  ------ inclusion threshold ------
      0.039   14.4   0.0      0.087   13.2   0.0    1.6  1  DUF150    RimP N-terminal domain


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.6   0.0   2.1e-46   1.8e-42       1     133 [.     164     295 ..     164     297 .. 0.97
   2 !   60.4   0.0   2.2e-20     2e-16     159     230 ..     297     370 ..     294     372 .] 0.93

  Alignments for each domain:
  == domain 1  score: 145.6 bits;  conditional E-value: 2.1e-46
       RVT_2   1 ktyrlvslPkdrkaigsrWvftkkkddl.kevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvk 98 
                 kt++lv  P +rk++g++Wv+++k+    + v++kar v++Gf q  g dy+e+fa v++  s ++l a+aa  +l +hq+dv++afL + +d+ vyv 
  CCE28218.1 164 KTWTLVPRPGNRKTLGAKWVYKLKRGPSgEIVRHKARWVVRGFEQEEGLDYQETFASVVKPMSYKVLFAIAAALNLELHQMDVKTAFLYGLIDDLVYVE 262
                 79**********************9988799******************************************************************** PP

       RVT_2  99 qPpGfeidreeekvykLnkslyGlkqapllWneki 133
                 qP Gf+     ++v+ Lnk+lyGlkq+p++W++++
  CCE28218.1 263 QPEGFNDG--TDRVCLLNKALYGLKQSPRIWYNTL 295
                 *****987..99********************987 PP

  == domain 2  score: 60.4 bits;  conditional E-value: 2.2e-20
       RVT_2 159 gklivalyvddlliagsdikiledvkkelakkfklkdlgkvskfLGieiaq..eaggiklsladyiakvvkkfe 230
                 g+l+va+yvddll+ag+d   ++ vk  l+k+f+++dlgk +++LG+ei++   + +i+l++++y +k++ +f+
  CCE28218.1 297 GNLYVAIYVDDLLLAGPDLDDIKAVKAALSKRFEMEDLGKCHHYLGMEIVRdrPNRTIRLNQRAYTQKILGEFQ 370
                 79***********************************************99445789************99886 PP

>> DUF150  RimP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.7e-06     0.087      21      58 ..     295     334 ..     289     345 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.7e-06
      DUF150  21 egrgrvlriyidk..dggvtlddcekvSraisalLdvedp 58 
                  +++ ++ iy+d    +g +ldd+++v  a+s++++ ed 
  CCE28218.1 295 LAGNLYVAIYVDDllLAGPDLDDIKAVKAALSKRFEMEDL 334
                 56799*******777899*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2872.24
//
Query:       CCE28219.1  [L=96]
Description: uncharacterized protein CPUR_01693 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 844.83
//
Query:       CCE28220.1  [L=214]
Description: uncharacterized protein CPUR_01694 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-25   89.7   0.0    3.1e-25   89.2   0.0    1.1  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   1.7e-29   3.1e-25       2     107 ..      79     185 ..      78     190 .. 0.93

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 1.7e-29
       RVT_2   2 tyrlvslPkdrkaigsrWvftkkkddl.kevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkq 99 
                 t++ v  P++   ++ +Wv+t+k +   +  + karlva+Gfsq+ g+d d +faP +r+d++rL+la++a+ee   hq d++ af ++el++++y+k 
  CCE28220.1  79 TFQEVVPPRGANIVSCKWVYTIKLKVDgSIERLKARLVARGFSQVYGQDSDRTFAPTVRMDMLRLFLAVTAQEEDECHQYDIKNAFTESELKDDIYLKA 177
                 6777888999*************876647789******************************************************************* PP

       RVT_2 100 PpGfeidr 107
                 P G  i r
  CCE28220.1 178 PEGVSIKR 185
                 ***99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1930.06
//
Query:       CCE28221.1  [L=345]
Description: uncharacterized protein CPUR_01695 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-07   31.6   0.0    3.9e-07   30.6   0.0    1.5  2  4HBT_2    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   2.2e-11   3.9e-07       5      89 ..     108     210 ..     105     252 .. 0.72
   2 ?   -3.7   0.0      0.89   1.6e+04      11      23 ..     314     326 ..     291     329 .. 0.69

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.2e-11
      4HBT_2   5 dvDlnghlnnarylryleearvkfle..............rtgl....ksrsiarr.giglilssahvryrrplkfpdrltvefrvididaktliiehr 84 
                 ++D+n h  n++y+  l++ar ++++              +tgl    k  ++++r  +g++l+s  + ++r+++  + ++  ++v  +d+k+l++   
  CCE28221.1 108 EIDYNLHKSNSTYFTDLDIARTHLVSyltrpamrslsynaETGLvldpK-TNKPARgPMGIMLGSVACSFKREIRAYHAYELWSKVLAWDRKWLYMVTH 205
                 69********************999888876655555555555555422.222222356**************************************** PP

      4HBT_2  85 flsna 89 
                 f+ + 
  CCE28221.1 206 FVPKG 210
                 *9833 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.89
      4HBT_2  11 hlnnarylrylee 23 
                  +++a++++ l+e
  CCE28221.1 314 GMEMAQHFQALDE 326
                 5778888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2608.57
//
Query:       CCE28222.1  [L=117]
Description: uncharacterized protein CPUR_01696 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 936.03
//
Query:       CCE28223.1  [L=357]
Description: probable homoserine kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-10   41.0   0.1    4.2e-10   39.7   0.1    1.7  2  GHMP_kinases_N  GHMP kinases N terminal domain
    1.2e-05   25.5   0.0    2.7e-05   24.5   0.0    1.5  1  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.1     1e+04      51      59 ..      55      63 ..      24      64 .. 0.56
   2 !   39.7   0.1   4.7e-14   4.2e-10       1      66 []      93     155 ..      93     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.1
                    HHHHHSHHH CS
  GHMP_kinases_N 51 ggngsggDv 59
                    g   +g+Dv
      CCE28223.1 55 GEGAGGDDV 63
                    233566666 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 4.7e-14
                     EEEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEH.HHH...HHHHHHHHHHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N   1 divikseiPvgaGLGSSAAlavalvaAllallgls.lee...aklaleaerlaqggngsggDvaasvyGg 66 
                     +++ik+ iP+g+GLGSS+A++va+v+   +  gl+ l++   ++ +l +er       ++++v a++yGg
      CCE28223.1  93 HVHIKNPIPLGRGLGSSGAAVVAGVMLGKEVGGLKgLDMdrlFDYCLMIER-------HPDNVGAALYGG 155
                     79******************************9887644446777777776.......9**********8 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     3e-09   2.7e-05      20      79 ..     269     327 ..     254     336 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 3e-09
  GHMP_kinases_C  20 sqrs...elkavvgilppeleellealselG...algaklsGaGgGptvfalfkdkdeaeqvaral 79 
                     +q +   ++  ++  l p l+e++e++s  +    lg++lsGa  Gpt+ al+   ++ e++a+++
      CCE28223.1 269 MQ-DkihQP--YRQTLIPGLTEIVESMSPKTksgFLGVCLSGA--GPTILALA--TSNFEDIANQI 327
                     23.347789..****************9999999*********..********..55555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:02.39
# Mc/sec: 453.71
//
Query:       CCE28224.1  [L=231]
Description: uncharacterized protein CPUR_01698 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-20   72.0   0.0    4.5e-18   65.5   0.0    2.1  2  PRELI     PRELI-like family


Domain annotation for each model (and alignments):
>> PRELI  PRELI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   2.5e-22   4.5e-18       3     115 ..      18     144 ..      17     157 .. 0.88
   2 !    4.3   0.0    0.0018        32     122     155 ..     176     209 ..     168     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 2.5e-22
                 HHHHHHT--S....BTTBTTEEEEEEEEEEEET.TSEEEEEEEEEEEEESSTTSTTTSSS........EEEEEEEEEEEEETTTTEEEEEEEESSSTTT CS
       PRELI   3 VtaaflrryP....npiskhvisvdvlereldd.egklvteRlitlqvrvPrwlkkligv........aktvyvleesvvdlkkrtlkletrNltfssl 88 
                 Vt a++ ry     np ++hv+s+d+++ ++d+ +++l+t+R+  ++ r+P  + kl+ +        +k +y+le+svvd k+  ++++++Nl+f+s+
  CCE28224.1  18 VTLAYFLRYSspelNPFASHVLSTDTISSHVDPeTQRLHTTRIHLKKSRLPGAVFKLLPAsvtgggsgDKASYILETSVVDMKEGWMHTKSQNLNFTSI 116
                 67788888853344799****************7777*******************998755666666788**************************** PP

                 EEEEEEEEEEEETTTT...EEEEEEEEE CS
       PRELI  89 lkveErvvYkphpens.ekTvlkqeaki 115
                 l v E+  +k + en  ++T ++ ++k 
  CCE28224.1 117 LTVLEQQDFKRDAENMaNHTGVDISVKC 144
                 ****************9**999877765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       PRELI 122 fglsskveklllkkfsenakkgkeglesvlkele 155
                 ++l++++e l+ +k  +++ k++ g+  vl+ l+
  CCE28224.1 176 KSLQRTIERLASTKTVDQLGKSRDGMRIVLERLR 209
                 68999*************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1673.17
//
Query:       CCE28225.1  [L=158]
Description: probable LTP1-protein-tyrosine-phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-43  146.8   0.0    6.1e-43  146.6   0.0    1.0  1  LMWPc     Low molecular weight phosphotyrosine protein phosph


Domain annotation for each model (and alignments):
>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.6   0.0   3.4e-47   6.1e-43       1     142 []       7     152 ..       7     152 .. 0.97

  Alignments for each domain:
  == domain 1  score: 146.6 bits;  conditional E-value: 3.4e-47
                 EEEEESSSSSHHHHHHHHHHHHHHHTT-CCCE.EEEEEESTST.TT-B--HHHHHHHHHTTS--TT-BB-BS-HHHHHHSSEEEESSHHHHHHHHHHCC CS
       LMWPc   1 vlfvClgNicRSpmAealfrkelekagleekv.evdSaGtgal.vgkradpravevlkekgislsghvarqlskeelaelDlilamdeenkreleslap 97 
                 vlfvClgNicRS mAe +f++++++ ++++k+ ++dS+Gt a+  g+++d r++++l+++gi + +h+ar +++++++++D+++amd++n+ +l+sl  
  CCE28225.1   7 VLFVCLGNICRSTMAEGIFQHLAQQPQYKDKIgKIDSCGTAAYhSGEQPDSRTLSTLHDNGITTYKHAARRVKTQDFDTFDYVFAMDKSNLSDLNSLRK 105
                 89************************************************************************************************* PP

                 TTGGGGEEEGGGG...SSTSS---HTTSSHHHHHHHHHHHHHHHHHHH CS
       LMWPc  98 ekekakvkllgey...teqldieDPyygeieafeevldeieeavkkll 142
                 +  kakv+l+ge+   +e   ++DPyyg++++fe++++++ + +k++l
  CCE28225.1 106 K-GKAKVMLFGEFsgtGEAEVVDDPYYGGRDGFEKAYEQCSRYAKNFL 152
                 9.779*********98788889*********************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1242.55
//
Query:       CCE28226.1  [L=416]
Description: MAP kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-69  233.7   0.0    2.9e-69  233.4   0.0    1.1  1  Pkinase        Protein kinase domain
    1.7e-32  112.7   0.0    2.5e-32  112.2   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
     0.0039   16.2   0.0      0.006   15.6   0.0    1.3  1  Haspin_kinase  Haspin like kinase domain
  ------ inclusion threshold ------
      0.023   14.1   0.0       0.05   13.0   0.0    1.4  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
      0.052   13.5   0.1       0.17   11.8   0.1    1.7  1  APH            Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.4   0.0   8.2e-73   2.9e-69       1     264 []      23     314 ..      23     314 .. 0.92

  Alignments for each domain:
  == domain 1  score: 233.4 bits;  conditional E-value: 8.2e-73
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHHHHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee....kdelylvleyveggeladllerkgs 94 
                 y++ ++lG+G++G V  av+++t++ vAvKk+ +   kk   k++lrEik+l++++ h+ni  ly++        +e yl  e++e++ la +++  + 
  CCE28226.1  23 YTVTKELGQGAYGIVCAAVNNQTKESVAVKKVTNVFSKKILAKRALREIKLLQHFRgHRNITCLYDMDIPrpdvFNETYLYEELMECD-LAAIIRSGQP 120
                 78899*************************************************************988878888999********99.*****99999 PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvl.keneyskkvDvWslGvil 187
                 l++++ +++++qil+gl+y+Hs++++HrDlKp N+L++ + elKi+DFGla+ ++ + +     +t++v+t++Y+APE++ + ++y+k++DvWs+G+il
  CCE28226.1 121 LTDAHFQSFIYQILSGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSADPEqnagyMTEYVATRWYRAPEIMlSFQSYTKAIDVWSVGCIL 219
                 *******************************************************999999******************9899**************** PP

                 HHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS...........................-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 188 yelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei...........................seeakdllkkllkkdpkkRltaeel 258
                 +ell  +p f+   g++     +dql +il++lg +   + ++ s i                           +++a+dll+k+l+ dp++R+++e++
  CCE28226.1 220 AELLGSRPFFK---GRD----YVDQLNQILHVLGtP---NEETLSRIgspraqeyvrnlpvmpkknfatlfpqaNPHALDLLDKMLAFDPSSRISVEQA 308
                 ***88888888...554....788888899999952...2223333344567777999***************************************** PP

                 HTSGGG CS
     Pkinase 259 lqhpyl 264
                 l+hpyl
  CCE28226.1 309 LEHPYL 314
                 ****97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.0   6.9e-36   2.5e-32       3     203 ..      25     225 ..      23     250 .. 0.86

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 6.9e-36
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS.-BTTB--EEEEEESSSS....EEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkkl.khpnivkllgvctkeep....llivteyvkgGdLlkfLrk 94 
                  ++k+lG+Ga+G V+ +  +    +++++VavK++++  +++   ++ l+e+k+++++  h+ni  l+ + + +      +++  e+++  dL   +r+
   CCE28226.1  25 VTKELGQGAYGIVCAAVNN----QTKESVAVKKVTNVFSKKIlAKRALREIKLLQHFrGHRNITCLYDMDIPRPDvfneTYLYEELMEC-DLAAIIRS 117
                  689***********99998....999********8877666548999**********99**********99444334447888888875.9******9 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.EETTSSTSGGGGS.-HHHH.HHSEEEHHHHHH CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey.vkkeeaklpvkWm.apEsl.kekkftsksDvW 189
                     ++lt  +  sf++q+ +G++y++s +++Hrdl   N L++ +   ki+DfGLar  + d e+     ++ +  +W+ apE++ + +++t++ DvW
   CCE28226.1 118 G--QPLTDAHFQSFIYQILSGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSADPEQnAGYMTEYVATRWYrAPEIMlSFQSYTKAIDVW 213
                  7..9*******************************************************88887724456667999**98***8715567******** PP

                  HHHHHHHHHHTTSS CS
  Pkinase_Tyr 190 sfGvllwEiftlge 203
                  s G +l E++   +
   CCE28226.1 214 SVGCILAELLG--S 225
                  ********963..4 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.7e-06     0.006     122     256 ..      45     173 ..      10     186 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-06
  Haspin_kinase 122 kdkevvlKviplevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqqlflvll......lkdkGtdLeevklkswkqalsi 211
                    ++++v++K++     + +  +    l e k l+ ++g   +++ l    + +  pd+++e+ l+  l+      +  +G++L+  +++      s 
     CCE28226.1  45 TKESVAVKKVTNVFSKKILAK--RALREIKLLQHFRGH-RNITCLYDMDIPR--PDVFNETYLYEELMecdlaaIIRSGQPLTDAHFQ------SF 129
                    445566666654222222222..344666666666666.4443333333332..4566655555433311111133455555555444......45 PP

  Haspin_kinase 212 fwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRl 256
                     +qi++ L+   ++ +  HRdL+ +n Lv++  +  ++d+ l+R 
     CCE28226.1 130 IYQILSGLKYIHSA-NVLHRDLKPGNLLVNADCELKICDFGLARG 173
                    78888888877665.566*************************95 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.4e-05      0.05      85     165 ..      93     167 ..      49     173 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
         Kdo  85 kvgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliD 165
                 + +++    l  e +e   dL++++++++ l ++  +  + ++    + +h+a+v H+dl + n+l++++     e+ + D
  CCE28226.1  93 RPDVFNETYLYEELME--CDLAAIIRSGQPLTDAHFQSFIYQILSGLKYIHSANVLHRDLKPGNLLVNADC----ELKICD 167
                 5555555554444444..5999****9888999999*******************************9987....454555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.7e-05      0.17     168     196 ..     145     171 ..     137     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.7e-05
                 EE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 168 llHgDlhpgNllvdpddgrvtGviDfeda 196
                 +lH+Dl+pgNllv+ +d ++  + Df++a
  CCE28226.1 145 VLHRDLKPGNLLVN-ADCEL-KICDFGLA 171
                 79************.55666.58888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2944.97
//
Query:       CCE28227.1  [L=262]
Description: uncharacterized protein CPUR_01701 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-26   93.3   0.0    3.1e-26   92.7   0.0    1.2  1  DUF3455   Protein of unknown function (DUF3455)


Domain annotation for each model (and alignments):
>> DUF3455  Protein of unknown function (DUF3455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.0   1.7e-30   3.1e-26       1     158 []      50     259 ..      50     259 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 1.7e-30
     DUF3455   1 pagnklalvalgrGtqnYtCaasaagaaeptavgavAtLfdatclaaklpdlleslpslv....................................... 60 
                 p+g++l ++alg G+qnYtC  s+ ga  p+ +ga A L+d t+l+  +  ++eslp  +                                       
  CCE28227.1  50 PTGSELLHIALGFGIQNYTC--SHIGAR-PSSTGALAMLYDITALYPGQ--THESLPRKEdwdglprraiwshrvplnlnysstdgrveptspgaslte 143
                 778899**************..777777.*****************999..888898888999************************************ PP

     DUF3455  61 ..............aelklvgkhfft.dgtgPtfdldldgskvtgkkvasvaApkdaa......gavawllltakesgtlsgvtevyRveTaGGsapat 138
                               +   ++g+h ft +gt   f l+    +v+  k a v+Ap+da+      gavawl+l ak+ g+++gv++vyRv T+GG++   
  CCE28227.1 144 pfpadeplriwgvkKPIPFLGHHLFTaAGT-ADFVLRGGETNVLCDKLAAVDAPADADrgpqgtGAVAWLQLGAKP-GSVGGVKYVYRVLTSGGASHG- 239
                 ************998999********7777.9*****666888999999*******99****************99.*****************9877. PP

     DUF3455 139 CekagekfeveYaAeYvFyg 158
                 C ka ++ +  Y+A Y+F+g
  CCE28227.1 240 CGKAVGQDSTVYTAMYWFFG 259
                 ****8888888*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2093.75
//
Query:       CCE28228.1  [L=1208]
Description: uncharacterized protein CPUR_01702 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-07   31.2  11.6    2.8e-07   30.5  11.6    1.3  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
        4.2    6.9  14.4        7.6    6.1  14.4    1.3  1  Spt20     Spt20 family


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5  11.6   3.2e-11   2.8e-07       1      37 [.     325     359 ..     325     362 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 3.2e-11
                 SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCC CS
     Zn_clus   1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysess 37 
                 +aCd+Cr+ K KCd+ kP C+ C+ +++ C+ y+++ 
  CCE28228.1 325 QACDQCRQLKAKCDELKP-CKTCQDKGTVCK-YRDPV 359
                 69****************.************.99876 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  14.4   0.00085       7.6      93     130 ..     136     179 ..     123     208 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00085
       Spt20  93 Dhrnsvaqsqktqdqkqsq.qnqqqqqqqqqqqqqqqq........q 130
                 Dh++ +   +    q+q+q q+q+qq+qq+qq+  q+q        +
  CCE28228.1 136 DHFRQPGPPS---HQQQQQhQQQHQQPQQYQQYHHQSQssspaippY 179
                 4444444432...2333335999999999999999999777776642 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1119  (0.0624129); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.99u 0.27s 00:00:01.26 Elapsed: 00:00:00.46
# Mc/sec: 7973.44
//
Query:       CCE28229.1  [L=124]
Description: uncharacterized protein CPUR_01703 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 997.11
//
Query:       CCE28230.1  [L=20]
Description: uncharacterized protein CPUR_01704 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (20 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       126  (0.00702772); expected 358.6 (0.02)
Passed bias filter:                       98  (0.005466); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 152.22
//
Query:       CCE28231.1  [L=249]
Description: uncharacterized protein CPUR_01705 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.077   13.5   0.0       0.14   12.6   0.0    1.5  1  Cucumo_2B  Cucumovirus protein 2B


Domain annotation for each model (and alignments):
>> Cucumo_2B  Cucumovirus protein 2B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     8e-06      0.14      11      63 ..     129     181 ..     121     213 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8e-06
   Cucumo_2B  11 armveakkqrrrshkqnrrerghkspserarsnlrlfrflpfyqvdgseltgs 63 
                 +r+  a  +r+r   q r erg  s  er+  +  l+ f  + +  gse+ g 
  CCE28231.1 129 SRFYAAMERRQRRDPQVRCERGSGSVDERSMDETALLAFGILLEEAGSEVLGR 181
                 6777889999999***********************************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1809.12
//
Query:       CCE28232.1  [L=476]
Description: related to microtubule-interacting protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-23   81.3   9.9    5.4e-06   27.0   0.1    5.8  5  WD40         WD domain, G-beta repeat
    1.9e-11   44.1   0.4     0.0035   17.6   0.1    4.9  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0012   17.6   0.5        0.6    8.7   0.1    3.1  3  Nup160       Nucleoporin Nup120/160
     0.0022   17.9   0.0       0.56   10.1   0.0    3.0  2  eIF2A        Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.9e-06     0.017       5      38 .]      56      91 ..      52      91 .. 0.88
   2 !   13.9   0.1   1.7e-05     0.078       9      37 ..     124     154 ..     116     154 .. 0.76
   3 !   23.4   0.1   1.7e-08   7.7e-05       6      38 .]     207     241 ..     202     241 .. 0.85
   4 !   27.0   0.1   1.2e-09   5.4e-06       9      38 .]     279     309 ..     273     309 .. 0.92
   5 ?    2.7   0.1     0.058   2.6e+02      13      37 ..     385     426 ..     373     427 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.9e-06
                EEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40  5 rtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38
                r++++H  +v+ la    dg++l+sG+  g+++iWd
  CCE28232.1 56 RSIRAHtAGVSTLAlEKFDGRLLISGGLEGSIKIWD 91
                7889997779999997789****************9 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.7e-05
                 SSSS.EEEEE...EETTSSEEEEEETTSEEEEE CS
        WD40   9 GHss.vtsla...fspdgawlasGsdDgtvriW 37 
                 GHs+ +t+l    f+pd a+l s+s+D+t+++W
  CCE28232.1 124 GHSHgITHLGfypFDPD-AFL-SSSYDKTLKLW 154
                 99556****98655555.334.6788******* PP

  == domain 3  score: 23.4 bits;  conditional E-value: 1.7e-08
                 EEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 
                  l  H ++v + a+sp    + asG+ Dg+vriWd
  CCE28232.1 207 ALVSHgGPVLCTAWSPRREHIlASGHADGKVRIWD 241
                 56789888************6269999*******9 PP

  == domain 4  score: 27.0 bits;  conditional E-value: 1.2e-09
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +H  +v++la+ +dga+++s++ D++vr+Wd
  CCE28232.1 279 AHdEPVNGLAWTDDGAYIVSAGLDRKVRVWD 309
                 79777**************9999*******9 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.058
                 EEEEE.......EETTSSE..........EEEEETTSEEEEE CS
        WD40  13 vtsla.......fspdgaw..........lasGsdDgtvriW 37 
                 +t +a       +sp+g+           + s++ Dg +r W
  CCE28232.1 385 ITTIAwrshgggTSPNGRAgmggnnslgaIYSAHADGQIRAW 426
                 66665555555555555556666666676789999*****99 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.031   1.4e+02      47      69 ..      72      94 ..      53     110 .. 0.78
   2 !   17.6   0.1   7.9e-07    0.0035       9      71 ..     184     246 ..     174     258 .. 0.81
   3 !   16.0   0.0   2.5e-06     0.011      33      71 ..     276     314 ..     249     325 .. 0.82
   4 ?    0.4   0.0      0.19   8.4e+02      51      90 ..     342     391 ..     338     393 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.031
  ANAPC4_WD40 47 kpdgklLavaysdgevrlldaes 69
                 k dg+lL  +  +g++++ d  +
   CCE28232.1 72 KFDGRLLISGGLEGSIKIWDLDE 94
                 679***************99876 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 7.9e-07
  ANAPC4_WD40   9 LiAlatedgellvfRlngqrvwtleedkedsevrsLaWkp.dgklLavaysdgevrlldaesgk 71 
                  L++ at+++++++  l+    +++   ++++ v + aW+p  +++La +++dg+vr+ d+  + 
   CCE28232.1 184 LVSCATQHSNVRLVDLKSGAAVQA-LVSHGGPVLCTAWSPrREHILASGHADGKVRIWDVRRAG 246
                  678889999999988866555555.4899**********9459****************98765 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 2.5e-06
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  +++++d+ v++LaW  dg  ++ a  d +vr+ da +g 
   CCE28232.1 276 NAQAHDEPVNGLAWTDDGAYIVSAGLDRKVRVWDAATGA 314
                  45899******************************9985 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.19
  ANAPC4_WD40  51 klLavaysdgevrlldaesgkvvhslsvksek..........avtclgWg 90 
                  + L +  +d e+ +ld ++g+++  l+               ++t++ W 
   CCE28232.1 342 SNLLIWPNDHEILILDLHHGTILTRLRGPLGAgpstslsnstRITTIAWR 391
                  55666667778888888888887776533333444555555566666665 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.036   1.6e+02     237     259 ..     146     168 ..     140     194 .. 0.82
   2 !    5.4   0.0    0.0014       6.1     230     275 ..     225     270 ..     215     279 .. 0.78
   3 !    8.7   0.1   0.00013       0.6     216     253 ..     274     316 ..     251     360 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.036
                 ETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 237 srdgkLrvWnlltgkclatidll 259
                 s d++L++W ++ + ++a++dl+
  CCE28232.1 146 SYDKTLKLWATQRAALTASFDLN 168
                 78*******99999999999999 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0014
                 TTEEEEEETT-EEEEEETTTTEEEEE.EE--.-SSSTTS--SSEESE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclat.idllrdeeaqdessskstld 275
                 + +l++ + dgk+r+W+++ +  ++   d   d++  ++s+++s  d
  CCE28232.1 225 EHILASGHADGKVRIWDVRRAGGVMAlLDQE-DLIGIKSSEQASRAD 270
                 56788889**********9988887777777.777777777775554 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00013
                 ECEEEEET..........TTTEEEEEETT-EEEEEETTTTEEE CS
      Nup160 216 alsldvavavvei.....gqtylfalsrdgkLrvWnlltgkcl 253
                 ++++++    v+      + +y++++ +d+k+rvW+ +tg  +
  CCE28232.1 274 QANAQAHDEPVNGlawtdDGAYIVSAGLDRKVRVWDAATGANT 316
                 344444444444344447999****************998654 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.14   6.4e+02     112     133 ..      75      93 ..      62     100 .. 0.77
   2 !   10.1   0.0   0.00012      0.56      38     121 ..     191     302 ..     181     326 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.14
                 SSEEEEE-TTSSS-EEEEEETT CS
       eIF2A 112 gklvllaGfgnlaGeleiwdvk 133
                 g+l++ +    l+G+++iwd +
  CCE28232.1  75 GRLLISG---GLEGSIKIWDLD 93 
                 5555555...5789******87 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00012
                 EEEEEESSSTT--EEECCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.............................CEEEEEEEEES--EEE CS
       eIF2A  38 etelyliklkkkksevvelkkegpihdvaWspkskefaviyGkmpakvslfdlk.............................vkviskleeqkrNtif 107
                 ++++ l++lk++  ++  +++ gp+ ++aWsp++++ ++  G+++ kv ++d++                              ++ ++ + ++ N + 
  CCE28232.1 191 HSNVRLVDLKSGAAVQALVSHGGPVLCTAWSPRREH-ILASGHADGKVRIWDVRraggvmalldqedligiksseqasradssSQANAQAHDEPVNGLA 288
                 566777788888888888899999*******98765.56799*********997666655566666666666666666655555555556666667777 PP

                 E-TTSSEEEEE-TT CS
       eIF2A 108 fspkgklvllaGfg 121
                 + + g +++ aG+ 
  CCE28232.1 289 WTDDGAYIVSAGLD 302
                 77777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3560.63
//
Query:       CCE28233.1  [L=276]
Description: uncharacterized protein CPUR_01707 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-42  145.4   0.0    4.2e-42  144.3   0.0    1.6  1  APG5      Autophagy protein Apg5
  ------ inclusion threshold ------
      0.046   14.2   0.6      0.094   13.3   0.2    1.7  2  HEAT_EZ   HEAT-like repeat


Domain annotation for each model (and alignments):
>> APG5  Autophagy protein Apg5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.3   0.0   4.7e-46   4.2e-42      27     227 ..      70     274 ..      18     275 .. 0.86

  Alignments for each domain:
  == domain 1  score: 144.3 bits;  conditional E-value: 4.7e-46
        APG5  27 aiseknlPwrLtlhfkeypen.ellpldageeslkdsfinslKeAdfirngsakkvmnLskedqeqLWqsvknhdldkfwsinskllpspekkkvreiP 124
                  i+ +nlP  L   + + p    l+  d    ++ d+f+ns+KeAd++rng+a+++m++ske+++qLW++v+++d+  f s+n++ll++p+  ++r++P
  CCE28233.1  70 DIQLRNLPIGLLTDLYQPPLPfRLIVSDGPAWDIADTFLNSVKEADYVRNGNANQIMKMSKEHTTQLWHAVLDNDYVAFRSVNARLLNAPV--ALRHVP 166
                 556666666666666644433356666777899*********************************************************9..8***** PP

        APG5 125 iriylpdankdqt..................esekviqelvppl.kedgqpqtLgdllsellpelfpskkkkekasssekeegsaaelakvliqGievp 204
                 +r+y+p+ ++                     +s +v+q+lv+++ ++dg+p  Lg++l+el+p lfps +++  a               v+++G+ vp
  CCE28233.1 167 LRVYVPSPPPAPVpaaggssrghepgregeaGSFRVVQALVSAVgAADGRPRLLGQVLKELMPRLFPSARDPVLA--------------GVVLHGVGVP 251
                 *****77775444889*************************9987899*******************99998776..............8********* PP

        APG5 205 leaplawlaanlsypDgFlhivv 227
                 +eapl +l+++++ypDg+l +vv
  CCE28233.1 252 FEAPLGELMREAAYPDGWLCLVV 274
                 *********************98 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         2   1.8e+04      20      30 ..      46      56 ..      43      59 .. 0.58
   2 ?   13.3   0.2     1e-05     0.094       6      40 ..     205     238 ..     200     243 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2
     HEAT_EZ 20 ellqplvpeil 30
                 +l++l+p++ 
  CCE28233.1 46 SYLALLLPRLT 56
                55666666655 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1e-05
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLlalLndd 40 
                 a ++a+G +a g+p+ll ++++e++p L +  +d+
  CCE28233.1 205 ALVSAVG-AADGRPRLLGQVLKELMPRLFPSARDP 238
                 3344444.778*****************9777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2296.30
//
Query:       CCE28234.1  [L=598]
Description: uncharacterized protein CPUR_01708 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00077   19.2  19.9    0.00077   19.2  19.9    9.8  5  Collagen        Collagen triple helix repeat (20 copies)


Domain annotation for each model (and alignments):
>> Collagen  Collagen triple helix repeat (20 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   8.2   0.00092        16       4      53 ..      49     100 ..      44     107 .. 0.44
   2 ?   -8.8  25.5         1   1.8e+04       4      56 ..     140     194 ..     131     246 .. 0.68
   3 ?   -8.8  30.1         1   1.8e+04       6      53 ..     340     384 ..     273     387 .. 0.63
   4 !   19.2  19.9   4.3e-08   0.00077       2      53 ..     378     425 ..     376     442 .. 0.39
   5 ?  -12.8  25.2         1   1.8e+04      10      54 ..     438     489 ..     427     518 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.00092
                 XXXXXXXXXXXXXXX-----X.XXXEEEE-TTSS.----------------- CS
    Collagen   4 GepGepGppGppGkrGepGea.GekGekGpaGek.GppGaaGkpGapGekGe 53 
                 G +G+ G +G + ++G++G+  G + e+  +G++    G++G +G++G++G+
  CCE28234.1  49 GTTGTTGTTGISSTTGTTGTViGGAHESTFPGSEnYTIGNTGTHGTHGTHGK 100
                 4455555555555555555422333333333322122344444444444443 PP

  == domain 2  score: -8.8 bits;  conditional E-value: 1
                 XXXXXXXXXXXXXXX-----XXXXEEEE-TTSS-----..------------BB- CS
    Collagen   4 GepGepGppGppGkrGepGeaGekGekGpaGekGppGa..aGkpGapGekGeaGa 56 
                 G +G++G +G + ++  +G +G++  +G +G + ++    +G +G++G++G++G+
  CCE28234.1 140 GVHGTHGTHGTHTSTTGTGLTGSHDTHGTHGTHTSTTGtgTGLTGSHGSHGTHGT 194
                 4444455555444444444444444444444443322201233344444443333 PP

  == domain 3  score: -8.8 bits;  conditional E-value: 1
                 XXXXXXXXXXXXX-----XXXXEEEE-TTSS----------------- CS
    Collagen   6 pGepGppGppGkrGepGeaGekGekGpaGekGppGaaGkpGapGekGe 53 
                 +G++  +G +G+ G +G aG +G +G +G +G +G +G +Ga G +G+
  CCE28234.1 340 TGSHETHGVSGS-GLTG-AGTHGTTGTHGTTGTHGTTG-TGASGLTGT 384
                 222222222221.1221.22222222222222222222.123333333 PP

  == domain 4  score: 19.2 bits;  conditional E-value: 4.3e-08
                 XXXXXXXXXXXXXXXXX-----XXXXEEEE-TTSS----------------- CS
    Collagen   2 ppGepGepGppGppGkrGepGeaGekGekGpaGekGppGaaGkpGapGekGe 53 
                 ++G +G++G    +G++G++G++G +G +G +G +G +G +G +G++G++G+
  CCE28234.1 378 ASGLTGTHG----TGTHGTTGTHGTTGTHGTTGTHGTTGTHGTTGTHGTTGT 425
                 333333332....122333333333333333333333333333333333332 PP

  == domain 5  score: -12.8 bits;  conditional E-value: 1
                 XXXXXXXXX--.---XXXXEEEE-TT..SS--....---------------B CS
    Collagen  10 GppGppGkrGe.pGeaGekGekGpaG..ekGp....pGaaGkpGapGekGea 54 
                 G++G + +rG+ +G +G++  +G +G  ++G+     G aG++G++ ++G++
  CCE28234.1 438 GHSGDHSTRGTgTGVTGSHNTHGTSGvgKTGAgvtgAGIAGAHGTHDTHGHS 489
                 3333333333223333333333333311222111111222333322222322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      135  (0.0075297); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 3850.09
//
Query:       CCE28235.1  [L=163]
Description: uncharacterized protein CPUR_01709 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-14   52.2  14.4    8.5e-14   51.8  14.4    1.1  1  MARVEL           Membrane-associating domain
     0.0037   17.5   1.2     0.0045   17.2   1.2    1.2  1  DUF4293          Domain of unknown function (DUF4293)
     0.0099   15.4   5.7      0.014   15.0   5.7    1.1  1  ABC2_membrane_5  ABC-2 family transporter protein
  ------ inclusion threshold ------
      0.011   14.7  10.4      0.078   11.9   3.6    2.0  2  MFS_1            Major Facilitator Superfamily
      0.049   13.5   0.2      0.049   13.5   0.2    2.2  2  DUF2721          Protein of unknown function (DUF2721)
      0.084   13.3   0.9      0.084   13.3   0.9    2.0  2  DUF2583          Protein of unknown function (DUF2583)
       0.16   11.4   1.2       0.26   10.7   1.2    1.4  1  DUF373           Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8  14.4   3.3e-17   8.5e-14       7     143 ..       8     131 ..       4     132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 3.3e-17
      MARVEL   7 gilrilqlvfaiiilgliaslia.....kldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlvafialaag 100
                 + lr l+l+f+iii+gl++s+ia     + ++ + s +s+  +++ va+++ ++al++l++          +   +  + +d ++++lw +af +l+++
  CCE28235.1   8 IGLRALELAFSIIIVGLAGSFIAtsgdpTNKDADASTRSRFIYTIIVACIASVLALVWLFP----------FTANFTQWPADIVISILWWIAFGLLVYA 96 
                 679***********************99666677888889999999999998888888888..........67899999******************** PP

      MARVEL 101 lrdiscafesnqysasltvrcgqaqaavafgflavllfaasav 143
                 l +         + a+ +  cg+ +aava +fl+ ll++asa 
  CCE28235.1  97 LPS--------KCRAFFDLKCGSFKAAVAICFLSALLWLASAG 131
                 ***........677889999********************985 PP

>> DUF4293  Domain of unknown function (DUF4293)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.2   1.8e-06    0.0045      42     141 ..      36     132 ..       6     134 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.8e-06
     DUF4293  42 staeaetsvnvsvwvlvilllliailaliaIflyknRklQlrlclinllllvllyvllallllvnkanaaaeslgesslkiglilplialilnlLAirg 140
                 ++++a+ s+    ++ +i++ ++ +lal+ +f +    +Q    ++ ++l  + ++ll++ +l +k + a   l+ +s+k+++++ +++  l++LA  g
  CCE28235.1  36 TNKDADASTRSRFIYTIIVACIASVLALVWLFPFTANFTQWPADIVISILWWIAFGLLVY-ALPSKCR-AFFDLKCGSFKAAVAICFLSA-LLWLASAG 131
                 45677788899999****************************997777777777777777.4555554.555566789998876666654.67999998 PP

     DUF4293 141 I 141
                 I
  CCE28235.1 132 I 132
                 8 PP

>> ABC2_membrane_5  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   5.7   5.3e-06     0.014      93     196 ..      19     128 ..      12     135 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.3e-06
  ABC2_membrane_5  93 ailitlllliiavlikgn......vtisevllsiliglvialiflaivlPlyfkfgvekgrivliiiifgiifllvaifsl...sklelslidl 177
                       i+++l+ ++ia+   ++       t s ++++i+++++ ++++l+ ++P++  f ++ + iv+ i++ ++++llv  + +     ++l+  ++
       CCE28235.1  19 IIIVGLAGSFIATSGDPTnkdadaSTRSRFIYTIIVACIASVLALVWLFPFTANFTQWPADIVISILWWIAFGLLVYALPSkcrAFFDLKCGSF 112
                      33333333444444444444478889999********************************988888888877555443321323334444444 PP

  ABC2_membrane_5 178 snyilliillviillliiv 196
                         + ++   ++++ll+++
       CCE28235.1 113 KAAVAIC---FLSALLWLA 128
                      4332222...224444444 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.2   0.00094       2.4     123     173 ..       8      67 ..       5      77 .. 0.62
   2 ?   11.9   3.6   3.1e-05     0.078     212     275 ..      79     144 ..      66     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00094
       MFS_1 123 igllsagfslGailgpllggllasslg.........Wravfyilaivsllafvlfllllp 173
                 igl ++  ++++i+  l+g+++a+s+           r+ f+   iv+++a vl+l++l+
  CCE28235.1   8 IGLRALELAFSIIIVGLAGSFIATSGDptnkdadasTRSRFIYTIIVACIASVLALVWLF 67 
                 455555556666777777777776666777777777666666666666666665555543 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.1e-05
       MFS_1 212 llialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrr 275
                  +++++l++++f +l++ lp+  +  ++l+  ++  a+++  l+al+++++a ++g+ls+r g+++
  CCE28235.1  79 DIVISILWWIAFGLLVYALPSKCRAFFDLKcgSFKAAVAICFLSALLWLASAGIGGYLSRRRGSQP 144
                 5788999999***********77888999998777777778888888888899********99865 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   1.9e-05     0.049      57     113 ..      43      97 ..      35     102 .. 0.86
   2 ?    0.8   0.5      0.16   4.1e+02      94     112 ..     112     130 ..     103     133 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.9e-05
     DUF2721  57 rrRarlirrailllvlsallvvlvvlllflsallsldlsllaailfvlalllllvsl 113
                 + R+r i   i+++++s+l++v   l+ f ++++++  +++++il  +a  ll+++l
  CCE28235.1  43 STRSRFIYTIIVACIASVLALV--WLFPFTANFTQWPADIVISILWWIAFGLLVYAL 97 
                 5799999999999999988755..5666777799*********************98 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.16
     DUF2721  94 lsllaailfvlalllllvs 112
                 ++ ++ai+f+ all l+ +
  CCE28235.1 112 FKAAVAICFLSALLWLASA 130
                 5667788888888777655 PP

>> DUF2583  Protein of unknown function (DUF2583)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.5   3.9e+03      52      58 ..      60      66 ..      45      88 .. 0.69
   2 ?   13.3   0.9   3.3e-05     0.084      33      65 ..     104     134 ..      78     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.5
     DUF2583 52 iGallWl 58
                + al+Wl
  CCE28235.1 60 VLALVWL 66
                3467776 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.3e-05
     DUF2583  33 lpelelpellaeaallgifiGallWlaGarvgG 65 
                 +++l+   +   aa+   f+ allWla a++gG
  CCE28235.1 104 FFDLKCGSFK--AAVAICFLSALLWLASAGIGG 134
                 5566666554..455567**************9 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.2    0.0001      0.26     231     318 ..      52     137 ..       4     155 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0001
      DUF373 231 lligiisgyislesvssasvssglltlilafiyg........................avewlalailtaslgkiideylkreekdiarllllpflvla 305
                 ++++ i+                          +                        +++w+a+++l+++l +   ++++ +  +++++++++fl   
  CCE28235.1  52 IIVACIA--------------------------SvlalvwlfpftanftqwpadivisILWWIAFGLLVYALPSKCRAFFDLKCGSFKAAVAICFLSAL 124
                 2222222..........................0222222222223333333333333999*******************99999999*********** PP

      DUF373 306 iglvlygasayll 318
                 ++l   g+ +yl 
  CCE28235.1 125 LWLASAGIGGYLS 137
                 ***********93 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1251.11
//
Query:       CCE28236.1  [L=1378]
Description: related to 5-oxoprolinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-216  720.1   0.2   2.1e-216  719.3   0.2    1.4  1  Hydantoinase_B  Hydantoinase B/oxoprolinase
   2.9e-102  341.9   0.5   2.9e-102  341.9   0.5    1.6  2  Hydantoinase_A  Hydantoinase/oxoprolinase
    1.1e-59  201.2   2.1    2.6e-58  196.6   0.1    2.4  2  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region


Domain annotation for each model (and alignments):
>> Hydantoinase_B  Hydantoinase B/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  719.3   0.2  3.5e-220  2.1e-216       1     516 []     782    1347 ..     782    1347 .. 0.96

  Alignments for each domain:
  == domain 1  score: 719.3 bits;  conditional E-value: 3.5e-220
  Hydantoinase_B    1 DpitlevfrnrlmsiaeemgrtlqrtaiSpnikerlDfscalfdadgelvaqaphipvhlgsmseavkavlekfegelkpGDvlltNdPyagg 93  
                      Dpi l++f +r+m+iae+mgr+lq+t++S+n+kerlDfsca+fda+g+lva+aph+pvhlgsms++v++++e ++g+l++GDv+++N+P +gg
      CCE28236.1  782 DPILLSIFGHRFMAIAEQMGRALQKTSVSTNVKERLDFSCAIFDAKGGLVANAPHLPVHLGSMSTCVRRQAEIWQGRLRKGDVVISNHPSYGG 874 
                      9*************************************************************************99***************** PP

  Hydantoinase_B   94 tHlpDitvitPvfhege..lvffvasraHhaDiGGitpGsmppdateifeEGlrippvklveege.leedvlelllanv.........Rtped 174 
                      tHlpD+t+++P f      ++f++asraHhaDiGGit+Gsmpp+++e++eEG++i + klv++g+ +e++v+el+ +++         Rt+ d
      CCE28236.1  875 THLPDVTLVMPAFDAAGehVLFYAASRAHHADIGGITAGSMPPHSRELYEEGAAIVSEKLVSGGKfNEQRVVELFYDEPakhagcsgtRTLGD 967 
                      *************654478************************************************************************** PP

  Hydantoinase_B  175 nlgDlkAqiaanqvgerrlkelieeyGldtveaamdeildnaeravraalaelpd....gtyeaedylddgipikvtvtidgde..atvDftg 261 
                      n++Dl+Aq++anq+g+++++ li eyG + v+ +m +i++nae  vr++l++++       ++a dy+ddg+pi++++ti++d+  a++Df+g
      CCE28236.1  968 NINDLRAQVSANQKGISLIEGLITEYGQASVQFYMLHIQKNAELCVRNLLRDVHAqfggRPLQAIDYMDDGTPIRLSITINPDQgsAEFDFDG 1060
                      ***************************************************999999976789*****************999999******* PP

  Hydantoinase_B  262 tspqvkgniNaplavtlsaviyvlrclvdediplNeGclrpievklpegsllnpsepaavvggnvetsqrvvdvvlkalaqalpervaAasqg 354 
                      t+pqv+gniNap+a+t+sa+iy+lrcl+++diplN+Gclrpi+vk+p++s+l+p + aavvggnv+tsqr++dv++ka++      ++Aasqg
      CCE28236.1 1061 TGPQVYGNINAPEAITYSAIIYCLRCLISDDIPLNQGCLRPITVKIPPKSILSPAPGAAVVGGNVLTSQRITDVIFKAFE------ACAASQG 1147
                      ********************************************************************************......******* PP

  Hydantoinase_B  355 tmnnltfggvderg.....geffgyyetiagGaGArpgkdGasavhvhmtntrntdvEilErryPvlverfelrpdsgGaGkyrGGdGvvrei 442 
                      ++nnltfg   +        + fgyyetiagG+GA+p++ G+s+vhvhmtntr+td Ei+ErryPvl+++f++r++sgG+G++rGGdGvvr+i
      CCE28236.1 1148 CCNNLTFGFGGN-VsgtqtIRGFGYYETIAGGSGAGPHWAGTSGVHVHMTNTRITDSEIFERRYPVLLREFSIRHGSGGNGQHRGGDGVVRDI 1239
                      *******73332.1356777788********************************************************************** PP

  Hydantoinase_B  443 eflepevtvsilserrvfapwGlaGGepGargrvvlnllvr......................................geeenlggkatvel 497 
                      ef+ p ++vsilserrv++p+Gl+GGe+G++g    nl+vr                                      ++ +nlg+k+++++
      CCE28236.1 1240 EFRIP-LQVSILSERRVYRPYGLKGGEDGQCGL---NLWVRhvekqnwekslrrfrddqggnddnhderddkddsveyeERFINLGAKNSAAM 1328
                      ****9.***************************...66666666677777899999999999999999************************* PP

  Hydantoinase_B  498 kagdvlvietpGGGGyGdp 516 
                      kagd++++ tpGGGG+G p
      CCE28236.1 1329 KAGDRIIVCTPGGGGWGVP 1347
                      *****************65 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2      0.99   5.9e+03      82      94 ..      13      25 ..      10      32 .. 0.84
   2 !  341.9   0.5  4.8e-106  2.9e-102       1     290 [.     253     558 ..     253     559 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.99
  Hydantoinase_A 82 ItfDmGGTstDvs 94
                    I +D GGT tD++
      CCE28236.1 13 IAIDRGGTFTDCI 25
                    889********97 PP

  == domain 2  score: 341.9 bits;  conditional E-value: 4.8e-106
  Hydantoinase_A   1 rtetavvnAylspilreylesvekslekrgak...........arlmvmqsdGglvsadearkkpvetilSGPaaGvvgaaat.sklagekkvIt 83 
                     r+++++ +Ayl+p +r+y+++++  +e    +           ar+ +mqsdGglv++d++++   ++ilSGPa+Gvvg+a t ++++++ +vI+
      CCE28236.1 253 RATSVCADAYLTPAIRRYIDGFQGGFEGGLGTrsvreekgckgARCEFMQSDGGLVDVDKFTGL--KAILSGPAGGVVGYAITsYDEETKIPVIG 345
                     78899**********************9777799*****************************9..*****************89999******* PP

  Hydantoinase_A  84 fDmGGTstDvslikdgevevsleteiagvkvrlpaldirtvgagGgsilvvdeggklrvgpesagadpgpacyrkGgteltvTDanlvLGrlqpe 178
                     fDmGGTstDvs++ +g++e+++et++agv++++p+ldi+tv+agGgs+l ++++g + vgpesaga+pgpacyrkGg ++tvTDanl LGrl pe
      CCE28236.1 346 FDMGGTSTDVSRYGEGRYEHVFETTTAGVTIQSPQLDINTVAAGGGSRL-FFRNGLFVVGPESAGAHPGPACYRKGG-PATVTDANLYLGRLLPE 438
                     *************************************************.***************************.***************** PP

  Hydantoinase_A 179 dfls..gpdgdqkldvelarrafeelakelnlk......veevAegilsvavenmanavrklsvergldpkeltlvvfGGaGaqhaaalaeelgv 265
                     +f+   g+++++ ld e+ +r ++ela+++n +       +evA+g+l+va+e m +++r++++++g+d +++ l+ fGGaG+qha a+a++lg+
      CCE28236.1 439 FFPNifGKNENEGLDIEASKRVLQELADQVNREtsqnlsTDEVAYGFLTVANEAMTRPIRSITEAKGHDSSKHRLATFGGAGGQHAVAIADALGI 533
                     ********************************9************************************************************** PP

  Hydantoinase_A 266 kkvivppyagvlsalGmalAdvree 290
                     ++++v++y++vlsa+GmalAdv  e
      CCE28236.1 534 SQILVHRYSSVLSAYGMALADVVDE 558
                     *********************9865 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.6   0.1   4.4e-62   2.6e-58       1     178 []      12     234 ..      12     234 .. 0.98
   2 !    3.8   0.2    0.0068        41       2      26 ..     344     367 ..     343     383 .. 0.77

  Alignments for each domain:
  == domain 1  score: 196.6 bits;  conditional E-value: 4.4e-62
  Hydant_A_N   1 rigIDvGGTfTDavaldekeeevavlKllst.....pdavaegirealeevleesipr.....tskidvvrmGTTvatNallerkgervaLittkgfrd 89 
                 ri+ID+GGTfTD++  ++   + +++Klls+     +da+ egir+++++ le+ ipr     ts id++rmGTTvatNallerkger+aL+ tkgf+d
  CCE28236.1  12 RIAIDRGGTFTDCIGQRN--SSTVIIKLLSEdptnyKDAPLEGIRRIMSHFLERDIPRgepldTSHIDSIRMGTTVATNALLERKGERIALVATKGFKD 108
                 79***************4..5799*************************************************************************** PP

  Hydant_A_N  90 lleigrqnrpdlfelrikkplvlyeevvevdervead.....................................gevlkpldeeevrealkalkaagve 151
                  l ig+q+rp++f+l i+k  vly++vve+derv+++                                     +++lk+ d + +r+ l++++++g++
  CCE28236.1 109 CLIIGNQSRPRIFDLAIRKADVLYDKVVEIDERVTLEdytedpertmtetqarpggeasivqeqtlvrgmsgetVRILKRADDADIRARLQEVYDDGIR 207
                 ************************************99************************************************************* PP

  Hydant_A_N 152 siavvllhSylnpehElrvaeiareig 178
                 siav+l+h y++p+hE +++++a++ig
  CCE28236.1 208 SIAVCLMHGYTFPDHEAQIGRVAKDIG 234
                 ***********************9875 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0068
  Hydant_A_N   2 igIDvGGTfTDavaldekeeevavl 26 
                 ig D+GGT TD+  + e+ +  +v+
  CCE28236.1 344 IGFDMGGTSTDVSRYGEG-RYEHVF 367
                 899********9877766.444554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.25s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 9511.47
//
Query:       CCE28237.1  [L=326]
Description: uncharacterized protein CPUR_01711 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-06   28.0   0.0      5e-06   26.5   0.0    1.6  2  NAD_binding_10   NAD(P)H-binding
    1.9e-06   27.6   0.0      3e-06   27.0   0.0    1.4  1  NmrA             NmrA-like family
  ------ inclusion threshold ------
      0.025   14.8   0.0      0.042   14.1   0.0    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.06   13.2   0.0      0.098   12.6   0.0    1.3  1  LpxI_N           LpxI N-terminal domain
      0.063   12.9   0.1      0.098   12.3   0.1    1.3  1  ApbA             Ketopantoate reductase PanE/ApbA
       0.07   13.4   0.0       0.12   12.7   0.0    1.3  1  TrkA_N           TrkA-N domain
       0.13   12.8   0.0       0.26   11.9   0.0    1.5  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
       0.21   10.9   0.0       0.29   10.4   0.0    1.2  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.2e-09     5e-06       3     146 ..       8     143 ..       7     158 .. 0.80
   2 ?   -1.9   0.0       1.2   2.6e+03      19      35 ..     248     264 ..     221     288 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 2.2e-09
                     TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT--EEEEEE CS
  NAD_binding_10   3 tGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeegaknivdaakeagvkRfvlvs 97 
                      G+ G ll+ +l ++ + + ++++ +++  +e++ +  ++v  +d +++++la al+g+d+V+s+++g  +      n+++aa  + ++ f+   
      CCE28237.1   8 GGGLGYLLAWQLSQA-DATYHIIILSTSARPEFS-ALDIHVYMVDYNNHSSLAYALQGTDIVISTISGAPQ-----LNLINAAALSRTRTFIPSE 95 
                     5899999********.69999999999999*997.79*****************************99886.....69*************9999 PP

                     ETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CE CS
  NAD_binding_10  98 aigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggL 146
                       g+  + p++ +e+++ l ++  +a      +   s + +T+   g +
      CCE28237.1  96 FEGSLSKRPSR-HEYDSPLTRSSSQAISLLQYWEDVSRMRYTVFACGIF 143
                     99999665554.4555555555544444444444447777777776666 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
                     T-EEEEEETTHHHCHHH CS
  NAD_binding_10  19 ghevtalvRnpeklael 35 
                     ++e+  lvR+p++l++l
      CCE28237.1 248 NVELEHLVRDPADLQAL 264
                     55666778888877754 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.3e-09     3e-06      10     151 ..      11     150 ..       3     189 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.3e-09
                 HHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GGS-HHHHHHHHHHHHHHHS-SEEEEEE--....- CS
        NmrA  10 qGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfyskeiedgkklvdAakeaGvkhfiySslg....d 104
                 +G  +++ l +a+ +  +++  t   +  ++++    +   d ++++sl+ al+g d v+s+++      + + +l++Aa+    + fi+S++     +
  CCE28237.1  11 LGYLLAWQLSQADATYHIIILST--SARPEFSALDIHVYMVDYNNHSSLAYALQGTDIVISTIS-----GAPQLNLINAAALSRTRTFIPSEFEgslsK 102
                 56666666666555555555333..3445777777888889***********************.....789*******************99621114 PP

                 GG.GT.SSS---TTTHHHHHHHHHHHHC.TS-EEEEEE-EEGGG-BSS CS
        NmrA 105 dndrsnaeepavphfdsKaeieeyvral.gipytfvyagffmenflsl 151
                    r++ + p     ++ ++  +y +   +++yt +++g+fme f + 
  CCE28237.1 103 RPSRHEYDSPLTRSSSQAISLLQYWEDVsRMRYTVFACGIFMERFHPQ 150
                 455666777777777788888888888789*************99986 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.9e-05     0.042       1      90 [.       3      84 ..       3     104 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-05
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHH CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCi 90
                     + i G+G+ G  +a+ l++ +    +i++ + s +   +     +  +++ + +d +n+++ La +l+++d+v++ +     l+++ a++
       CCE28237.1  3 IAIAGGGGLGYLLAWQLSQADAT-YHIIILSTSARP--EF----SALDIHVYMVDYNNHSS-LAYALQGTDIVISTISGAPQLNLINAAA 84
                     5688***************9776.599999999888..44....56899************.*************999998888888876 PP

>> LpxI_N  LpxI N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.4e-05     0.098       5      66 ..       5      66 ..       2      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.4e-05
      LpxI_N  5 iAGsGrlPllvaeaakaagrevvvvalegeadeelekivdevaevsvgqlgklikaLkregv 66
                iAG+G l  l+a ++ +a+  ++++ l+ +a +e+++   +v+ v   + ++l  aL+  ++
  CCE28237.1  5 IAGGGGLGYLLAWQLSQADATYHIIILSTSARPEFSALDIHVYMVDYNNHSSLAYALQGTDI 66
                9************************************8779999999999999888887666 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   4.4e-05     0.098       1      27 [.       3      29 ..       3      71 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.4e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtli 27
                iai+G G++G lla++L++a a+ ++i
  CCE28237.1  3 IAIAGGGGLGYLLAWQLSQADATYHII 29
                89****************998885554 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.2e-05      0.12       1      83 [.       3      85 ..       3      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.2e-05
                EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSH.HHHHHHHHHH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgdd.eanilavlla 83
                i+i+G G +G+ la +Ls+ +   + +i  + ++  e+++  ++v+  d+ + + L+ a ++  d+vi +++   + n++ ++++
  CCE28237.1  3 IAIAGGGGLGYLLAWQLSQaDA-TYHIIILSTSARPEFSALDIHVYMVDYNNHSSLAYA-LQGTDIVISTISGApQLNLINAAAL 85
                79*****************555.4777777778999999****************9876.8999999999886658888877666 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.26       1      68 [.       2      70 ..       2      88 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEE.CECHHHHHHH-SEEEE- CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvt.avdneeaaeeadvvvla 68
                   +i+i G+G +g  la +l++a+a+ h i++ +s  pe  +     + v+   +++ + a++ +d+v+ +
     CCE28237.1  2 RIAIAGGGGLGYLLAWQLSQADATYHIIILSTSARPEFSALDIHVYMVDYNnHSSLAYALQGTDIVIST 70
                   79********************88888888888888877666666666544134666777788888755 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00013      0.29      30     116 ..       2      86 ..       1      90 [. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE---BTTSS---SC-HHHHH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtvlipGkkaPkLvteemvk 116
                  ++ + GgG  G   ++  ++ +a+  ++ ++++++ ++++l  ++  v ++++++la a++ +d+vi+t  i G++  +L++++ ++
   CCE28237.1   2 RIAIAGGGGLGYLLAWQLSQADATYHIIILSTSARPEFSALDIHVYMVDYNNHSSLAYALQGTDIVIST--ISGAPQLNLINAAALS 86 
                  6789999999999999999999999999999999999999999999999********************..8899999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2328.86
//
Query:       CCE28238.1  [L=595]
Description: related to cecr1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-22   78.1   0.0    2.3e-21   76.5   0.0    1.8  1  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   1.3e-25   2.3e-21      53     327 ..     230     530 ..     218     531 .. 0.76

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 1.3e-25
                  HCCHCCCHHCCCHHHTCCCCCCHHHHHHCCCCCHCTTCCCCCCCCS.HHHHH...HH-GCSTCCHHHHCCCCCCC......CCCHCCT-EEEEEECCE CS
  A_deaminase  53 Lkeflydlsvdvlvlhwlievvrllavekakdlakdfvkylevifs.Plfea...tagpqlpelevvlkvvdgfd......svedeskvkerlilvks 140
                  + +f++ + v +  +h  + ++r +     ++l  d+v+++e++f+ Pl +    + +p+ +  ++++ +++ ++      ++ d  +++   ++ +s
   CCE28238.1 230 WRKFSKCFVVVSTIIH-YEPIFRAFLQRLMSQLNSDGVRWVELRFTwPLNYCrdrEEEPEADYSHMFKVIEQEVAkfraspEGHDFWGLTTIWTTLRS 326
                  5677778888888888.778888888888888888899999999874555556655566666777777666655411111134444555544444444 PP

                  TTTCCGHCCCHHHHHHCCCC..CCCCCCCCC-TTSTTGGG....HHHHHCCCCHT...T-EEEEEESSSS-.....CHHHHHHHHCS--SCECE-GGG CS
  A_deaminase 141 rkpeewseeinelasyyrdy..tvvnldllndekiepasl....flklraeagks...tllltpHaGEagg.....lehvveAllllkaerigHGvrl 224
                       + e+    ++  ++    +++ dl + e  + +      +l +++++ ++   ++ +  HaGE+ g      + + +A+ll ++ rigH ++l
   CCE28238.1 327 ADTRPMIENMDHCITTKLEFphLIAGYDLVGPEDFGKPLTsvlpELFWFRKQCAQekvNIPFFFHAGETLGdgnstDNNLFDAILL-GTRRIGHAYSL 423
                  4455555555555554444355899999999887776655677877777776554112677889****854222224679999998.*********** PP

                  GGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-S...HHHHHHHHHHHH.T--HHHHHHHHHHHHHCSSS- CS
  A_deaminase 225 rkdpvLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgtt...LieeYaiaaqvf.klseedlaelarNsvkqsfls 318
                   k p L +   +++i +e cP+SN  l+   ++ ++Pl+ +l+rg++  l  DDP++ g +   +++++ +a q +  l+ + l  la Nsv+ +  +
   CCE28238.1 424 YKHPLLIDMVKERKILVESCPISNEVLRLCGSVMAHPLPALLSRGVPCCLCNDDPAMLGHDtagMSHDFWQALQGWdNLGLAGLGSLAENSVRWACYE 521
                  ***********************************************************999**************99******************** PP

                  HHHHHHHCH CS
  A_deaminase 319 adekkklld 327
                  ++  + + +
   CCE28238.1 522 DQDTATWNG 530
                  999888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4309.01
//
Query:       CCE28239.1  [L=151]
Description: uncharacterized protein CPUR_01713 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1098.49
//
Query:       CCE28240.1  [L=641]
Description: uncharacterized protein CPUR_01714 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-13   49.0   0.0    2.7e-12   47.2   0.0    1.9  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    5.6e-11   42.5   0.0    1.3e-10   41.3   0.0    1.7  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    9.2e-10   38.7   0.0    2.1e-09   37.5   0.0    1.6  1  AidB_N         Adaptive response protein AidB N-terminal doma


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   4.5e-16   2.7e-12       1     149 [.     327     509 ..     327     510 .. 0.87

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 4.5e-16
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTS.....B-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH..--------..... CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrr.....kafgkplidhqlvreklaemaaeleaarllvyraae..aldagkpd..... 84 
                    g+G++ + + l+ +R+   +aa+g   r l  a++y+  r          +l+d++l  + la++ ae + + l ++ a +  ++++++p      
     CCE28240.1 327 GQGVQEISSILTLTRIHSTVAAVGGVGRGLAIARAYSLVRevgagNKTRMTLLDSPLHMRTLAKLSAEYHRLMLVTFYASYilGVSEHGPIspnas 422
                    6899999999***************************999444332233579***************************99554444444489999 PP

                    .................HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT....SGGGH...HHHHHHHTHHHHHSSS-HHHHHHHHHHHH CS
  Acyl-CoA_dh_1  85 .................raeasmaKlfaselaqevadlamqllGgaGy....leeyp...verlyrdarvlrigeGtseiqrniiarrl 149
                                     r  a+++K++++++ + +  ++m+ lGg Gy    +  ++   ++r +rd+ vl+i+eGt+++++ ++ r+l
     CCE28240.1 423 htleiltppekliepllRIMAQLVKAYVCKASVALLFSCMEALGGVGYlyneE--QEylnISRVFRDTCVLPIWEGTTDVLCTDLIRAL 509
                    99**********************************************66432..33669**********************9998876 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   2.1e-14   1.3e-10       3      96 ..     195     317 ..     193     318 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 2.1e-14
                    E---SS-SS-GGG---EE.EEETT.E..............EEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GG............ CS
  Acyl-CoA_dh_M   3 alTEpqaGsdvasvktta.aerdgge..............yvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdap............ 71 
                    ++TE+++Gsdv   +t a  +++  +              +++nG K+  ++a++++++++lar   +  a+gls+fl p+++             
     CCE28240.1 195 WMTERTGGSDVSLTETVAhRNTSATGegladkedqiplgpWAINGFKW-FSSATDSEMTIMLAR---TP-AGGLSTFLAPTRKHnpnattatgepd 285
                    79*********999986644433322578889999************5.56788**********...44.69********65555799******** PP

                    .......GEEE-----BSS-TTS-EEEEEEE. CS
  Acyl-CoA_dh_M  72 .......gvsvrrieeklGlrglptgelvfed 96 
                           g++++r+++k G++ lpt+elv+e+
     CCE28240.1 286 pdgqtlnGIRIQRLKNKFGTQALPTAELVLEN 317
                    ******************************98 PP

>> AidB_N  Adaptive response protein AidB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   3.5e-13   2.1e-09      19     138 ..      32     156 ..      13     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 3.5e-13
      AidB_N  19 qeavaregaaeaaeelaalGellgsaevlelarlanrnpPrlrth..DrfGrRiDevefhpayhalmaaaveaglhasawe...earegahvaraally 112
                 + +++r + ++a  e+++lG+ + s++vl++  +a+rn+P ++    D+fGr    + + +++++l ++++++g+ a+ ++   +++++++  ++ ++ 
  CCE28240.1  32 NLFLSRQVISQAGPEVQSLGKDVLSDQVLAWVTDAERNKPYIKGCgrDAFGRWKGDLVTGEGWRNLKDFSIAKGMVATGYDtisTYGPYSRPLQFLRTH 130
                 4567777888899*****************************9754499****99999***********************999999************ PP

      AidB_N 113 llaqveaGhlCPltmThAavpaLkae 138
                 l+   +a + CP +m ++a+ +L+++
  CCE28240.1 131 LWVGSCANVGCPSAMQDGAACLLRRH 156
                 *********************99642 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 4169.23
//
Query:       CCE28241.1  [L=72]
Description: uncharacterized protein CPUR_01715 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-13   49.3   2.6    3.9e-13   49.3   2.6    1.5  1  zf-AN1    AN1-like Zinc finger


Domain annotation for each model (and alignments):
>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   2.6   2.2e-17   3.9e-13       1      39 [.       8      47 ..       8      48 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 2.2e-17
      zf-AN1  1 CsfksCkkkdflp.fkCryCgkvFClkHrlpedHdCkkla 39
                Cs k+C++  + + ++C +C+++FC kHrl edH+C++l+
  CCE28241.1  8 CSLKECREPAQRIiGDCGFCSGQFCGKHRLLEDHKCSGLE 47
                **********8777***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 513.97
//
Query:       CCE28242.1  [L=484]
Description: related to DNA repair protein NTG1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-17   64.4   0.0    2.4e-17   63.3   0.0    1.6  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei
    5.7e-07   29.1   0.0    1.3e-06   28.0   0.0    1.6  1  HHH       Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   2.7e-21   2.4e-17       1     107 [.     248     393 ..     248     394 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 2.7e-21
                 HHHHHHTTS-HHHHHHHHHHHHHHHS........HCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH......................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................... RF
     HhH-GPD   1 vsailsqqtsderanriierlferfg........fptpedladadeekLrelirelGfyrrKakyikelArilv......................... 66 
                 +s +ls+qt+d + + ++erl+ +          ++++e ++++d   L+ li ++Gf+++K kyik++A  l                          
  CCE28242.1 248 ISLMLSSQTKDTVNAVAMERLKTELPaykagapaGLNLENILAVDAGVLNGLIWAVGFHNNKTKYIKQTALLLRdkwhgdipdtitgltslpgvgpkma 346
                 789*********************999************************************************************************ PP

                 ........S-SSS--TTSHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHH CS
                 ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 ........gkpdvlivvDvhvrrilkrlrsikekktkkkvekkleelle 107
                         ++++ +i vDvhv+ri + ++++k+ kt+++++ +l+ +l+
  CCE28242.1 347 ylclsaawDRTE-GIGVDVHVHRITNLWGWHKT-KTPEETRLALQSWLP 393
                 *******98876.********************.6*********98876 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.4e-10   1.3e-06       4      29 ..     326     351 ..     325     352 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.4e-10
                 HHHTSSHHHHHTSTT-SHHHHHHHHH CS
         HHH   4 glipasreeLlalPGVGpktAeaIls 29 
                 g+ip+++  L++lPGVGpk+A   ls
  CCE28242.1 326 GDIPDTITGLTSLPGVGPKMAYLCLS 351
                 89*******************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3419.70
//
Query:       CCE28243.1  [L=381]
Description: probable alcohol dehydrogenase (FDH1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-26   90.9   2.7    9.8e-26   89.8   2.7    1.7  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    3.6e-21   75.5   0.3    6.7e-21   74.6   0.3    1.4  1  ADH_zinc_N       Zinc-binding dehydrogenase
     0.0043   17.3   0.1      0.008   16.4   0.1    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.005   16.4   0.1       0.02   14.4   0.1    1.8  1  Glu_dehyd_C      Glucose dehydrogenase C-terminus
     0.0086   17.1   0.0      0.017   16.2   0.0    1.5  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.021   15.1   0.1       0.04   14.2   0.1    1.4  1  TrkA_N           TrkA-N domain
      0.036   13.6   0.1      0.065   12.8   0.1    1.4  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   2.7   3.8e-29   9.8e-26       2     103 ..      36     157 ..      35     163 .. 0.81

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 3.8e-29
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-................... CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlC................... 81 
                 +ev+i++ ++g+C++D  +l+g k++e ++p++lGHE +G+ve+vg++v+++k Gd+Vv+  + +c+eC+ Ck+g++nlC                   
  CCE28243.1  36 HEVRIQIYYTGVCHTDSYTLSG-KDPEGAFPIVLGHEGAGIVESVGEGVTNVKAGDHVVALYTPECKECKFCKSGKTNLCgkiratqgkgvmpdgttrf 133
                 89********************.9********************************************************8777776666666666555 PP

                 ..TTBEETTTSS-SSSBSEEEECG CS
       ADH_N  82 ..eeakllgvsldGgfaeyvvvpe 103
                   + ++ll +    +f++y+vv++
  CCE28243.1 134 kcKGKDLLHFMGTSTFSQYTVVSD 157
                 553333333333336666666665 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.3   2.6e-24   6.7e-21       2     119 ..     206     328 ..     205     338 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 2.6e-24
                 HHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEET...TTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEE.EEEEECSCTSSEE CS
  ADH_zinc_N   2 vGlaavqlAkalGa.eviavdsseeklelakklGadeviny...keadlverikeltggegvdvvfecvGsgatleaalkllkpg.GrlvvvGggkgee 95 
                 vGl +vq A   +a ++i+vd+++ k e akk+Ga++++n+   k+ ++ve++ e+t+ +g d+ f+c+G+ ++++aal+++++g G   ++G+   ++
  CCE28243.1 206 VGLSVVQGAVVNKAgKIIVVDVNPAKEEWAKKFGATHFVNPndlKDQSIVEKLVEMTD-GGCDYTFDCTGNVSVMRAALEACHKGwGESIIIGVAAAGQ 303
                 9****************************************6653336*********5.5**********************************77777 PP

                 EEEHHHHH.HTT-EEEEE-SSCHHH CS
  ADH_zinc_N  96 efdlrnll.lkeksilGsllgslre 119
                 e+++r++   + +  +G+ +g+++ 
  CCE28243.1 304 EVSTRPFQlVTGRVWKGCAFGGIKG 328
                 7999985548999999999999544 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   3.1e-06     0.008       1      91 [.     198     288 ..     198     290 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.1e-06
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH..TTTCEEEEE--TTTHHHHHHHHHTTS.SEEEE-SSGG.GHHHHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka..lgvrfeaialdaenyeavLaallkeg.dlvvnlsppi.ssldvlkaCi 90 
                      + i+GaG+vG +v++  + ++    +i+v+d + +k  ++ ak+  +   +++  l  + + + L+++  +g d   ++++++   ++ l+aC+
       CCE28243.1 198 IAIFGAGCVGLSVVQGAVVNKAG--KIIVVDVNPAK--EEWAKKfgATHFVNPNDLKDQSIVEKLVEMTDGGcDYTFDCTGNVsVMRAALEACH 287
                      689***************99987..9**********..33333323444455566666666666888888889**********56669999998 PP

                      H CS
  Sacchrp_dh_NADP  91 e 91 
                      +
       CCE28243.1 288 K 288
                      6 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   7.7e-06      0.02      32     211 ..     196     377 ..     183     378 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.7e-06
  Glu_dehyd_C  32 esalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatY.vds....retpvdeipe.aseemdlvvEaTGsakhafeaiealap 123
                  +   + GaG++GL  +    +  ++  ++ v++ ++    + +  ++ Gat  v+     +++ v+++ e ++   d+ +++TG+  ++ +a+ea   
   CCE28243.1 196 SNIAIFGAGCVGLSVVQGAVV--NKAGKIIVVDVNPA---KEEWAKKFGATHfVNPndlkDQSIVEKLVEmTDGGCDYTFDCTGNVSVMRAALEACHK 288
                  456799******988766665..45567899997555...667789****96244311113445666544145678*******************975 PP

  Glu_dehyd_C 124 .nGvaaLlGvpeds.evevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdldeleeAfe..dddetiKtvve 211
                    G  +++Gv +   ev+ +  +l +  v +  + +G +  + ++  + vd+  + +   +de++t++ +l e+++Afe  ++ + i++vv+
   CCE28243.1 289 gWGESIIIGVAAAGqEVSTRPFQLVTGRVWKG-CAFGGIKGR-SQLPSLVDDYMSGS-LKVDEFITHRKTLGEMNSAFEsmKSGDCIRAVVD 377
                  26999*****9865499999999999988876.557888765.45555555544333.3389****************83344578999887 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.7e-06     0.017       2     125 ..     239     369 ..     238     372 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.7e-06
                   T-SEEE...ETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHE.EEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHH CS
  ADH_zinc_N_2   2 GAdevi...dyrtedfe....aatggegvDvvldtvggealleaslkvl.pggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadil 90 
                   GA++++   d ++++++    + t  +g D+ +d++g+ + ++a+l+++ +g G  + ig   + ++++ ++++  +++v     f   ++ + + l
    CCE28243.1 239 GATHFVnpnDLKDQSIVeklvEMT-DGGCDYTFDCTGNVSVMRAALEAChKGWGESIIIGVAAAGQEVSTRPFQLVTGRVWKGCAFGGIKG-RSQ-L 332
                   899999877666555556776777.467*********99999*******8888**999985557777788878777777777777765555.777.* PP

                   HHHHHHHHHHH---..-EEEEEEGGGHHHHHHHHHSS CS
  ADH_zinc_N_2  91 eelaalieeGklrp..vvdrvfpleeaaeAhrylesg 125
                     l++ + +G l++   ++++ +l e++ A++ ++sg
    CCE28243.1 333 PSLVDDYMSGSLKVdeFITHRKTLGEMNSAFESMKSG 369
                   ***********998445778899*********99998 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.6e-05      0.04       1      57 [.     198     257 ..     198     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
                 EEEES-SHHHHHHHHHHHHTT.EEEEEEESSHHHHHHHHHTT.SEEEE.S-TTSHHHHHH CS
      TrkA_N   1 iiiiGlGrvGrslaeeLsegg.kdvvvidkdeerveelreeg.levvv.gdatdeevLee 57 
                 i+i G+G vG s+++    ++  +++v+d ++++ e +++ g +++v+  d  d++++e+
  CCE28243.1 198 IAIFGAGCVGLSVVQGAVVNKaGKIIVVDVNPAKEEWAKKFGaTHFVNpNDLKDQSIVEK 257
                 79*************988744445***************999777777688888887776 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.5e-05     0.065       2      35 ..     197     231 ..     196     262 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.5e-05
                     EEEEE--STTHH..HHHHHHHHCTSEEEEE-S-HHH CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGl..vtaavlaeighevigvDideek 35 
                     +i+++G+G vGl  v++av++++g ++i+vD++ +k
      CCE28243.1 197 NIAIFGAGCVGLsvVQGAVVNKAG-KIIVVDVNPAK 231
                     79*********8434556666555.89******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2876.05
//
Query:       CCE28244.1  [L=1132]
Description: uncharacterized protein CPUR_01718 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-15   54.5   0.0    6.8e-13   48.0   0.0    2.8  2  Nucleopor_Nup85  Nup85 Nucleoporin
  ------ inclusion threshold ------
      0.035   13.5  16.6      0.056   12.9  16.6    1.3  1  SDA1             SDA1
      0.059   13.3   0.8       0.16   12.0   0.1    2.1  2  GvpO             Gas vesicle synthesis protein GvpO


Domain annotation for each model (and alignments):
>> Nucleopor_Nup85  Nup85 Nucleoporin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   1.1e-16   6.8e-13      59     525 ..     340     961 ..     311     965 .. 0.78
   2 ?   -3.2   0.0      0.38   2.3e+03     533     567 ..     984    1017 ..     980    1018 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 1.1e-16
                      HHHHHHHHHHHHHHHHH...........HHHHSS..HHHHHHHHHHHHHHH...SSST...T.HHHHHHHHHHHHHTTS--..SHHHHHTTCCS CS
  Nucleopor_Nup85  59 salralleeleeaieslee......kslkeklek..leeleliwnlleily...fdkd...s.rstllesLleWvnrsdgefppseelieevle 137
                      s+ ++l++  ++++++l +      +++   +++  +e++  i +l+  ++   f++d   s    l+e L +W + s   +p++ ++i+ +  
       CCE28244.1 340 SITYQLIQLWNDYVDQLPQpegedfATIGPGQDTepFEKAAYIAQLMLRIHhnrFENDahnSkAAPLPEVLFDWQETSHCLYPDQVRQISRFK- 432
                      555555555555555555444444433322222245888888888887777333444476625999***********9999887777777655. PP

                      S-CSSSSSGSHHHHHHHHHHHHTT-HHHHHHHHTTTTTTTHHHH...S-.......HHHHHHHHHHHHHHTT--SS.................. CS
  Nucleopor_Nup85 138 skeeeeveehpdfWklvnqlllrGlfdqavalLelsglleleef...ec.......evsnnlvedlielLkkmPvysveeglslse........ 213
                           ++  h+ +W+++  +llrG +  a +lL+  g+ + ++     +       e+++++ ++ +e+L k+P  + +    + +        
       CCE28244.1 433 ----PSPACHSLYWQTLRNALLRGDVRGASQLLRIAGWENVTKVgrhDRaytgkalENVRRFADATCEILDKCPAARGD--WDIWNsswtmfrv 520
                      ....46999*************************9998876665321122222222566677788899******98643..333335689999* PP

                      .................-HHHHHHHHHHHHHHHHHHHTS---S-HHHHHHHHHHHHHHHT-HHHHHHT-SSHHHHHHHHHHHT---THH.HHHH CS
  Nucleopor_Nup85 214 .................fekkwreWksevlellqngsfseqkisgelrdnledllkilsGneskileysetWyellvglllYyiPtlkkleylq 290
                                       f++   +  ++ ++ l+   ++ ++i  ++ +nl++++ i++G++++il++ ++W e+ vgll + +      + ++
       CCE28244.1 521 qargsldklslfaegrdFSSLDTHYPAKPQSILTLTRKAASQIPWDIYENLQMVYGIILGKQEAILDTAQDWCEATVGLLGWWDDVSQRPQ-MN 613
                      *****************666666666666666666666667*******************************************9885545.66 PP

                      HHHHHS...............................................---TTSTTHHHHHHHHTS--GGGHHHHHHH..HHHHHHHHH CS
  Nucleopor_Nup85 291 lsakkcl..............................................pedetneleqlclailegdilsvlkelesllddswfaahla 338
                      l ++++                                                ++ +n +e ++ + +eg++  v+  l  +  ++ +a+ +a
       CCE28244.1 614 LRLSESRgfgfgasgfgtsgfgasggefqdlegssnyvdrlgavfrmvlqsdmCPNPVNPVEVAIASCFEGNVNGVIGLLRIW--SLPVASSVA 705
                      66666656699999999999999999999999999999999999999999999778889************************..999999999 PP

                      HHHHHTTSS................-----..........S---SSSTTHHHHHHHHHHHT......-TTTHHHHHHHHHS-S......HHHHH CS
  Nucleopor_Nup85 339 dLleakgll................eeass..........eledlflreyllleyasells......hkslWqvaigylslcp......segra 394
                      ++    + l                +   +          e+e   +++  l  ya el        ++  W+vai++l  +       +    
       CCE28244.1 706 EIASLGQWLppteickplpidalepD---ElammgispptEDEVEGIKDTTLVAYARELAGieqlsaQRDGWEVAIQVLGRMDvpqkseETVAD 796
                      99996666688888777776555431...155566667654444446667888888777665566689999********999888888777888 PP

                      HHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHH.HHHHHHHHHHXXXXXXXHHHHHHHHHHHHHHHH..HXX....XXX CS
  Nucleopor_Nup85 395 aleelLprvpletnddiekllsiCaklkLpevaksickilgqrllkeg.rlgeAltwfskagdielvkriawqlfeaslleg..eplsedlddn 485
                      +l  lL+ +  ++ +++e++ +i ++l++ + a++  ++ +  l ke  r geAl  ++ ++  + v+++ + l+  sl ++  +p  +dld +
       CCE28244.1 797 LLRDLLETLDANSGTKVERMWRILNDLGMISYAEETAEHFADVLSKEShRFGEALWYYALSHRPNKVREVLNLLISYSLIQStaFPPEQDLDTE 890
                      999***************************************999886599************************8887766225778899999 PP

                      XHHHH...................HHHHHHHHHHHHHHHXXX............XXHHHHHHHHHHHHHHH CS
  Nucleopor_Nup85 486 lgsai...................llsqrLsflakyreFykl............yeeeefkeAaelLisLl 525
                      l + +                   ll  +Ls +a++r Fy+             ++e   k+Aa+ L++ +
       CCE28244.1 891 LRNLLrkrtetlerrgkqdleaaqLLGRMLSGYATLRAFYETrdaqkmedlserKAEAVRKQAATALVAVI 961
                      99999*******************9*****************66666666666444444556666666666 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.38
                       XHHHHHHHHHHHHHXXXXX.XXXXHHHHHHHHHHH CS
  Nucleopor_Nup85  533 kfwllLladllpllelkkdpllseeetlelleaLe 567 
                        f+l Ll ++  +++ +  +lls +++ ++l+a e
       CCE28244.1  984 DFLLALLGEASVFIN-NRPCLLSLDQIDTVLKAVE 1017
                       799************.7779********9999987 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  16.6   9.5e-06     0.056      74     168 ..     119     224 ..      84     284 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.5e-06
        SDA1  74 eLlekwkeeekkekre....................eeeedsddeddeedwevesddds..eedseggwidvesdeeeieesdesedeeeeeeeeeeke 150
                 e  e+++e+ ++   e                       ed+++++d e++++e + +   + d e + +d e ++ee++++d s+d+ +ee++e ++ 
  CCE28244.1 119 EEEEEAEEDVNA---EeepelpphslfrktrlpsnrT--EDREEDEDAEGEDIEAEMSRyiAADIEAN-VDAEGEDEEMKSDD-SDDDMSEESKEPKES 210
                 333333333333...2456889999999999888542..33334445555555554444678888666.77776666666555.555544444333333 PP

        SDA1 151 ekeeeeeeeeeeeeeeee 168
                 e+e+++e+e    +e+ee
  CCE28244.1 211 EDESGKESE----QESEE 224
                 333332222....22222 PP

>> GvpO  Gas vesicle synthesis protein GvpO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.6e-05      0.16      32      62 ..     759     789 ..     745     801 .. 0.90
   2 ?   -3.2   0.1       1.4   8.6e+03      23      39 ..     935     951 ..     931     962 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.6e-05
        GvpO  32 relegvssvertedgWrvevevlElervPdt 62 
                 rel g+ +++++ dgW+v+++vl +  vP+ 
  CCE28244.1 759 RELAGIEQLSAQRDGWEVAIQVLGRMDVPQK 789
                 68899************************85 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.4
        GvpO  23 reqlaeLlgrelegvss 39 
                 ++++++L +r++e+v +
  CCE28244.1 935 AQKMEDLSERKAEAVRK 951
                 45666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.43
# Mc/sec: 7880.09
//
Query:       CCE28245.1  [L=814]
Description: related to aconitate hydratase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.2e-144  480.7   0.0   6.5e-144  480.4   0.0    1.1  1  Aconitase    Aconitase family (aconitate hydratase)
    3.6e-36  124.4   0.0    5.6e-36  123.8   0.0    1.3  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  480.4   0.0  7.2e-148  6.5e-144       1     461 []      76     533 ..      76     533 .. 0.90

  Alignments for each domain:
  == domain 1  score: 480.4 bits;  conditional E-value: 7.2e-148
   Aconitase   1 ekiwdahlv..ee............egiayv...pdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefer 82 
                 eki+++hl   ee            +g+a +   pdrv +qd+++++al ++++++ a             ++p+++++dh++  +e+++++l+  ++ 
  CCE28245.1  76 EKILYSHLDnvEEslltqtgdgrdiRGQANLrlnPDRVNMQDASAQMALLQFMSCGLAQ-----------AAIPASIHCDHLIVGSEGASADLAAGVAA 163
                 6777777765522344445555445333333457************************9...........9**************************** PP

   Aconitase  83 nkeryefLksaakafgirvvppgqGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvta 181
                 n e++efL+saa+++g++++ppg+GI+Hq++lE+ +alpg +++gtDSH++++ggl+++ iGvGg++a+++l+g p+elk+p+v+gv+ltG+l+ ++t+
  CCE28245.1 164 NGEVFEFLASAARRYGMDFWPPGAGIIHQTVLEN-YALPGLMMLGTDSHSPNAGGLCTITIGVGGADAVEALVGAPWELKAPRVLGVELTGRLGGWATP 261
                 **********************************.**************************************************************** PP

   Aconitase 182 kDlvlavigklrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaavlveaydkaqalf.....elaadedae 275
                 kD++l ++g+l+++g++g v+E+fGegv+sLsl+++aTi+NM+aEvGAtt++fp++ +  +YL+at+r++a + v+a ++a         +l+ad++ae
  CCE28245.1 262 KDVILRLAGELTVRGGTGSVIEYFGEGVDSLSLTGQATICNMGAEVGATTSIFPYTAASARYLHATRRAQAVADVAALQAASLSAsvpplRLQADDGAE 360
                 ******************************************************************998887545444433222122344799****** PP

   Aconitase 276 ydkvleldlstlepsvagpkrPqdavplselvkkefkeelekeaaekaleyklkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkp 374
                 yd+v+++dlstlep+++gp++P+ a+pl ++ +     ++             +++++ k   +++a+igSCTNss+ed++++ +ll++a ++glk+++
  CCE28245.1 361 YDRVIRIDLSTLEPHINGPFTPDLATPLGQFGA-----AV------------RENQWPEK---LSAALIGSCTNSSYEDMTRVESLLKQADAAGLKPAA 439
                 ****************************66664.....44............57899999...********************************9999 PP

   Aconitase 375 gvktsvaPGSevvkayleaeGlleiLekaGfevvgagCstCignsdrle.......egeaivsssNRNFegRq..gpntrayLaSPelvvaaAlaG 461
                   +++++PGSe+++a+l ++G+l+ ++kaG  +++++C++Cig++ r +       + +ai++s+NRNF+gR+  +p t+++LaSPe+v+a+A+aG
  CCE28245.1 440 --DFYITPGSEQIRATLARDGTLDAFRKAGGVLLSNACGPCIGQWSRRDadavpkgAPNAILTSYNRNFRGRNdgNPATMNFLASPEIVTAMAFAG 533
                 ..*********************************************776666644444**************75588888*************98 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   0.0   6.2e-40   5.6e-36       3     130 ..     615     741 ..     613     742 .. 0.97

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 6.2e-40
                  CCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHHHT CS
  Aconitase_C   3 kllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalrll 100
                  +l k+ G++t+d +s+++++lk+++++ ++++n+   + ++e+ ++n++ dld +++  ++d a+ +k+ +++++++a++n+GeGS+RehAA+++r l
   CCE28245.1 615 VLVKVAGKCTTDTISAAGPWLKYKGHLPNISTNTLHTALNAETNQVNHALDLDGSPH-TIPDLAQLWKQRNQEWLLVAEHNYGEGSAREHAALQPRYL 711
                  68899***********************************************87666.9*************************************** PP

                  TEEEEEES-B-HHHHHHHHHTT-EEEEEST CS
  Aconitase_C 101 GikaviaeSFerIfennliknglLplefke 130
                  G ++v+++SF+rI+e+nl+k+g++pl+f++
   CCE28245.1 712 GCRVVLTKSFARIHETNLKKQGVVPLTFAR 741
                  ****************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5953.16
//
Query:       CCE28246.1  [L=691]
Description: uncharacterized protein CPUR_01720 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4822.94
//
Query:       CCE28247.1  [L=779]
Description: uncharacterized protein CPUR_01721 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-11   42.8   0.0    6.5e-11   42.1   0.0    1.2  1  Pkinase        Protein kinase domain
    2.5e-10   39.7   1.6       0.13   12.6   0.0    5.8  6  HEAT           HEAT repeat
    1.9e-08   34.6   0.1    1.6e-07   31.5   0.1    2.2  1  Cnd1           non-SMC mitotic condensation complex subunit 1
    1.4e-05   25.4   2.2     0.0057   17.0   0.2    3.1  4  HEAT_2         HEAT repeats
    1.5e-05   24.4   0.0    2.6e-05   23.6   0.0    1.3  1  Pkinase_Tyr    Protein tyrosine kinase
    1.6e-05   25.3   0.4       0.49   11.0   0.3    4.2  4  HEAT_EZ        HEAT-like repeat
    8.1e-05   23.1   0.0      0.059   14.0   0.0    2.8  2  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
  ------ inclusion threshold ------
      0.015   14.8   0.1        1.1    8.7   0.1    2.4  2  CLASP_N        CLASP N terminal
       0.11   12.8   0.0          3    8.2   0.0    2.7  2  Cohesin_HEAT   HEAT repeat associated with sister chromatid c
       0.14   11.4   0.0       0.23   10.7   0.0    1.2  1  Kinase-like    Kinase-like
       0.21   10.1   0.1       0.31    9.6   0.1    1.3  1  Adaptin_N      Adaptin N terminal region


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0     4e-14   6.5e-11      49     204 ..      68     232 ..      51     271 .. 0.84

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 4e-14
                 HHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSE CS
     Pkinase  49 ikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlak 146
                 +k l++++hp ++++++++e+++++y+ +e v    l  +++ ++sl++e++k  ++++++ ++++  +++ iH  lK   +  +e+ge K++ F + +
  CCE28247.1  68 LKKLRTMRHPGVIKVFDTVETETYIYIATERVV--PLRWHVK-RKSLAPETIKWGLHSVAKTVKFINtDASSIHGNLKVGSVYTSESGEWKLGGFEVLS 163
                 67789999***********************99..6677775.699*********************7788**************************** PP

                 ESSSSCS.....BCTTTSCGGGS-HHHH......TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHH CS
     Pkinase 147 elesssk.....ltsfvgtseYlAPEvl......keneyskkvDvWslGvilyelltgkppfsgekgke 204
                  ++++++      + +  + +Y +PE+        +++  +++D +++Gv+++e+++g    s++ g++
  CCE28247.1 164 SVKEDESviytyGSMIPDSARYAPPEIArggwesIKKSPHSAIDSFGYGVLIFEVFNGDYNGSDQAGQT 232
                 *****9999884445556789*******77665322444899***************987766554444 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       0.4   6.5e+02       1      24 [.     353     376 ..     353     382 .. 0.84
   2 !    7.8   0.0    0.0027       4.4       1      24 [.     392     415 ..     392     422 .. 0.89
   3 !   12.6   0.0   7.8e-05      0.13       1      31 []     431     461 ..     431     461 .. 0.92
   4 ?    5.0   0.1     0.022        36       2      29 ..     471     498 ..     470     500 .. 0.85
   5 !    6.8   0.0    0.0056       9.1       1      24 [.     509     532 ..     509     539 .. 0.87
   6 ?   -2.7   0.0       6.6   1.1e+04      15      21 ..     538     544 ..     533     545 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.4
                 HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaL 24 
                 ++P+++k+   p+  +R   + +L
  CCE28247.1 353 IIPFVVKMFGNPDRAIRVYLLDSL 376
                 89***********99997766665 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0027
                 HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaL 24 
                 l+P++ +  +D+ p VRe ++k++
  CCE28247.1 392 LFPHIATGFTDSQPVVREQTLKSV 415
                 78*****************99986 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 7.8e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaevl 31 
                 ll  l +  +D+ p +R ++  +Lg++a++l
  CCE28247.1 431 LLKQLARTANDEQPGIRTNTTICLGKIAKHL 461
                 677899999*******************986 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.022
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 + ++ + l+Dp  + R aA++aL+a  e
  CCE28247.1 471 IAAFTRSLRDPFVHARNAALLALAATTE 498
                 5678899****************98665 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0056
                 HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaL 24 
                 +lP+++ ll D++  +R+ A +++
  CCE28247.1 509 ILPVVCPLLIDKEKMIRDQANRTI 532
                 89****************997666 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 6.6
                 HHHHHHH CS
        HEAT  15 eVReaAa 21 
                 +VR+aA 
  CCE28247.1 538 KVRKAAS 544
                 7****96 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1   9.8e-11   1.6e-07      18     124 ..     388     514 ..     368     543 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 9.8e-11
        Cnd1  18 lveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteisek.senaiynllpdiisklsd....... 106
                 + ++l +++ ++++D++p VR++++  v+ L   l d +++ ++l++la+  +De+p +++n+ ++l +i++  ++    ++l+  + + +        
  CCE28247.1 388 VNDKLFPHIATGFTDSQPVVREQTLKSVLLLitKLSDRIINGELLKQLARTANDEQPGIRTNTTICLGKIAKHlGSASRSKVLIAAFTRSLRdpfvhar 486
                 56899**************************555668999999*****************************976555666666666555543444433 PP

        Cnd1 107 .......alne.....csewgqitilefLl 124
                        a         +e++ + il ++ 
  CCE28247.1 487 naallalA--AttehfSDEDCATRILPVVC 514
                 33333320..03334455555555555555 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.5   7.3e+03      17      34 ..      64      81 ..      63      83 .. 0.82
   2 ?   -1.0   0.0       1.5   2.4e+03      12      54 ..     364     414 ..     354     423 .. 0.67
   3 !   17.0   0.1   3.6e-06    0.0058      11      88 .]     402     494 ..     391     494 .. 0.78
   4 !   17.0   0.2   3.5e-06    0.0057       5      83 ..     436     528 ..     430     533 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.5
      HEAT_2 17 rraairaLgrignpealp 34
                +r+a++ L ++++p +++
  CCE28247.1 64 ARNALKKLRTMRHPGVIK 81
                689999999999998876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.5
      HEAT_2  12 pdpevrraairaLg........rignpealpaLvellededpavRraaaea 54 
                 pd ++r   +++L         +i n++++p +    +d+ p vR++  ++
  CCE28247.1 364 PDRAIRVYLLDSLPmmidrlpqKIVNDKLFPHIATGFTDSQPVVREQTLKS 414
                 555555555555555554444445566777777788888888888877665 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 3.6e-06
      HEAT_2  11 dpdpevrraairaLg........rignpealpaLvellededpavRraaaeaLgai....g....dpealpaLkellddddddvvReaAaeaLa 88 
                 d+ p vr +++++          ri n e+l+ L + ++de p +R +    Lg+i    g    ++  ++a +++l+d+ +   R+aA+ aLa
  CCE28247.1 402 DSQPVVREQTLKSVLllitklsdRIINGELLKQLARTANDEQPGIRTNTTICLGKIakhlGsasrSKVLIAAFTRSLRDPFVHA-RNAALLALA 494
                 6666667666666665666666778888**************************995544243323557899999999999998.999999986 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 3.5e-06
      HEAT_2   5 lqalendpdpevrraairaLgrignp........ealpaLvellededpavRraaaeaLgaig........dpealpaLkellddddddvvReaA 83 
                     +nd+ p +r ++ ++Lg+i+           +++a+++ l+d+  + R aa  aL+a            + lp+ + ll d ++  +R +A
  CCE28247.1 436 ART-ANDEQPGIRTNTTICLGKIAKHlgsasrskVLIAAFTRSLRDPFVHARNAALLALAATTehfsdedcATRILPVVCPLLID-KEKMIRDQA 528
                 222.3699999**********654433433434366***********************98853343222235589999999986.555667666 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.6e-08   2.6e-05      51     204 ..      67     223 ..      56     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.6e-08
                  HHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr  51 eakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenkvvkisDf 147
                   +k +++++hp ++k+   +  e  ++i te v    L+ ++++k   +l  +++    + vAk ++++++    +H +l    v  se+   k++ f
   CCE28247.1  67 ALKKLRTMRHPGVIKVFDTVETETYIYIATERV--VPLRWHVKRK---SLAPETIKWGLHSVAKTVKFINTDAsSIHGNLKVGSVYTSESGEWKLGGF 159
                  57889999*************999999999976..5799999998...7777777778899********975439*********************** PP

                  TTHEETTTSSEEEETTSSTSG..GGGS-HHHHHHSE......EEHHHHHHHHHHHHHHHHTTSSG CS
  Pkinase_Tyr 148 GLardiekddeyvkkeeaklp..vkWmapEslkekk......ftsksDvWsfGvllwEiftlges 204
                   + +++++d++   + ++ +p   ++ +pE+ + +         s+ D + +Gvl++E+f+ g+ 
   CCE28247.1 160 EVLSSVKEDESVIYTYGSMIPdsARYAPPEIARGGWesikksPHSAIDSFGYGVLIFEVFN-GDY 223
                  ******9999886666666553389*****99876655555566778*************9.443 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.34   5.6e+02       8      45 ..     331     369 ..     329     375 .. 0.75
   2 ?   -2.6   0.0       5.4   8.8e+03      30      49 ..     393     412 ..     390     413 .. 0.67
   3 !    7.3   0.0    0.0043         7      28      55 .]     430     457 ..     430     457 .. 0.96
   4 !   11.0   0.3    0.0003      0.49       4      52 ..     486     532 ..     483     532 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.34
     HEAT_EZ   8 awaLGrlaggepellqp.lvpeilpaLlalLnddsdeVR 45 
                 a aL+ ++  ++ l ++ + ++i+p+ +++  +++ ++R
  CCE28247.1 331 AKALAVILKIAAKLSSDdFESRIIPFVVKMFGNPDRAIR 369
                 66777755555555444599**********999998887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.4
     HEAT_EZ  30 lpaLlalLnddsdeVRaaAa 49 
                  p  + + +d+++ VR++++
  CCE28247.1 393 FPHIATGFTDSQPVVREQTL 412
                 56666666777777799885 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0043
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgnl 55 
                 e+l++L+++ nd+++ +R+++ ++Lg++
  CCE28247.1 430 ELLKQLARTANDEQPGIRTNTTICLGKI 457
                 689***********************97 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.0003
     HEAT_EZ   4 RraAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 R+aA++aL++  +   +e+++   ++ilp  ++lL d+++++R +A +++
  CCE28247.1 486 RNAALLALAAtTEHFSDEDCA---TRILPVVCPLLIDKEKMIRDQANRTI 532
                 999*****8765555566666...89********************9875 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.6e-05     0.059       5      86 ..     329     409 ..     327     416 .. 0.87
   2 ?    5.9   0.0     0.012        19       2      47 ..     485     528 ..     484     545 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.6e-05
  Vac14_Fab1_bd   5 ggligLaav.aialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvks 86 
                    gg  +La +  ia + +++++ ++i++ v+k+f   d+ +R y  +sl  ++  + +++++   ++f  +   ++Ds++ v++
     CCE28247.1 329 GGAKALAVIlKIAAKLSSDDFESRIIPFVVKMFGNPDRAIRVYLLDSLPMMIDRLPQKIVN--DKLFPHIATGFTDSQPVVRE 409
                    777888865367777789*******************************999999999998..58899999999999888886 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.012
  Vac14_Fab1_bd   2 arkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyya 47 
                    ar+++l++Laa++   +   +++  +i+++v   + Dk++ +R  a
     CCE28247.1 485 ARNAALLALAATTEHFSD--EDCATRILPVVCPLLIDKEKMIRDQA 528
                    7999******99988776..68999***************999665 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.033        54     144     196 ..     366     411 ..     340     425 .. 0.77
   2 ?    8.7   0.1    0.0007       1.1      96     221 ..     432     554 ..     424     558 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.033
     CLASP_N 144 vqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVReta 196
                   +R y +  L ++++r +   +k+ + +l+    + +  g +D++p VRe++
  CCE28247.1 366 RAIRVYLLDSLPMMIDRLP---QKIVNDKLF----PHIATGFTDSQPVVREQT 411
                 5678899999999999999...666666656....9**************975 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0007
     CLASP_N  96 lptLlkllgdtKkiisqnanqalaallsnasfspri.lqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVR 193
                 l+ L +   d    i++n++++l  + ++++  +r  + +  +  + + ++  +  a +L+++ t  +     ++ +     i ++++ +l D +  +R
  CCE28247.1 432 LKQLARTANDEQPGIRTNTTICLGKIAKHLGSASRSkVLIAAFTRSLRDPFVHARNAALLALAATTEH-----FSDEDCATRILPVVCPLLIDKEKMIR 525
                 56667777777777888888888888888886666544444444444444444444444444444444.....44556666788888888888888888 PP

     CLASP_N 194 etaRstfweffkvwPsrAksll.ssldpk 221
                 ++a  t+ ++ + +++ A ++    l p+
  CCE28247.1 526 DQANRTIDSYLQKVRKAASEMPdTALTPQ 554
                 88888888888888888888775555555 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0018         3       3      40 ..     376     413 ..     375     415 .. 0.87
   2 ?    1.9   0.0      0.18     3e+02       5      35 ..     417     447 ..     413     448 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0018
                   HHHHHHH-GGGGGSHHHHHHHHHHHHSS-HHHHHHHHH CS
  Cohesin_HEAT   3 lsslvekdpsiLsapevldtiarrltDsspsVRdAaLe 40 
                   l +++++ p+   ++++   ia  +tDs p+VR+ +L+
    CCE28247.1 376 LPMMIDRLPQKIVNDKLFPHIATGFTDSQPVVREQTLK 413
                   6789999999999999999999***********98776 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.18
                   HHHHH-GGGGGSHHHHHHHHHHHHSS-HHHH CS
  Cohesin_HEAT   5 slvekdpsiLsapevldtiarrltDsspsVR 35 
                   +l++k ++   + e+l+++ar ++D+ p +R
    CCE28247.1 417 LLITKLSDRIINGELLKQLARTANDEQPGIR 447
                   5556655555566899**********99988 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.23     166     243 ..     137     218 ..     130     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
  Kinase-like 166 vhgkftvdnllldekgglmlggftaLvragtkvvl.....seve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyri 243
                  +hg+++v +++  e g  +lggf+ L  +++   +     s+++  + +aPpE+   rgg++  +k     ++d  + G+ i+ +
   CCE28247.1 137 IHGNLKVGSVYTSESGEWKLGGFEVLSSVKEDESViytygSMIPdsARYAPPEIA--RGGWESIKK-SPHSAIDSFGYGVLIFEV 218
                  7*************************9998765542223455559899*****95..567666333.333467888888888876 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00019      0.31      92     197 ..     365     478 ..     288     538 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00019
                 SHHHHHHHHHHHCCC-....-CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCC CS
   Adaptin_N  92 nqlirglALrvLssir....vpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleei.kkndr 184
                 +  ir   L +L +++    ++ + ++l+p i +  +d++p+vr + + ++l l+ k +d + +  l++++    +d++pg+ ++++  l +i k +  
  CCE28247.1 365 DRAIRVYLLDSLPMMIdrlpQKIVNDKLFPHIATGFTDSQPVVREQTLKSVLLLITKLSDRIINGeLLKQLARTANDEQPGIRTNTTICLGKIaK-HLG 462
                 55555555555555553432444558899999999999999999999999999999998888888899999999999999999999999999942.332 PP

                 CCC...HHHHHHHCCH CS
   Adaptin_N 185 lll...kllpklvrrL 197
                 +++    l+  ++r L
  CCE28247.1 463 SASrskVLIAAFTRSL 478
                 3233444555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 4985.76
//
Query:       CCE28248.1  [L=146]
Description: uncharacterized protein CPUR_01722 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-11   45.4  10.5      1e-11   45.4  10.5    1.9  2  DUF2462   Protein of unknown function (DUF2462)


Domain annotation for each model (and alignments):
>> DUF2462  Protein of unknown function (DUF2462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4  10.5   5.8e-16     1e-11       1      77 []       1      70 [.       1      70 [. 0.86
   2 ?   -3.1   0.3      0.77   1.4e+04      16      16 ..      81      81 ..      71      92 .. 0.44

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 5.8e-16
     DUF2462  1 MaQGklKkkkkkk.sakakkkaknpkkgarviaPKkaklvkqqklkkklsaglnkktEkelasrAgsskLellkggkk 77
                MaQG++K+++k+k ++  ++k++  k g+r  +P        +k+++k++agl++ktE++l++rAg  +Lel+++gkk
  CCE28248.1  1 MAQGTIKTSTKAKaPKATHSKKQASKVGKRGTKPSI------DKVHRKFTAGLTAKTEALLGERAG--HLELIGKGKK 70
                ********9988874445555556888999999966......8899********************..*******997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.77
     DUF2462 16 k 16
                 
  CCE28248.1 81 G 81
                1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1114.45
//
Query:       CCE28249.1  [L=898]
Description: uncharacterized protein CPUR_01723 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.22s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 6639.25
//
Query:       CCE28250.1  [L=511]
Description: probable endo-1,4-beta-xylanase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-23   83.1   1.2    3.6e-23   82.3   1.2    1.4  1  Glyco_hydro_43  Glycosyl hydrolases family 43


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   1.2     2e-27   3.6e-23      10     285 ..      42     327 ..      31     330 .. 0.77

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 2e-27
                     EESEEEEEETTCEEEEEEEBTEE........SEEEEEEESSSS....SCEEEEECEESTTTCSTTTEECTEEEEEE.EETTEEEEEEEEEETTCC CS
  Glyco_hydro_43  10 ypDpsilrvgedyYlvtstfewf........pglrifhSkdLv....nWkqvgrvlerrsqlsmkgknasWAPeis.khdgkyylyytatkkgea 91 
                     ++Dp  + v++  Y++++++ +         + + +  S d      nWk   + +   + +++++ +a +A +i    dg yyly ++++ ++ 
      CCE28250.1  42 TADPGPIVVNGSLYIIAGHDSAPkddnnfiiNHWHLLASDDPNpaggNWKMYPDFVAPHTVFRWADTAAAYASQIVlGPDGGYYLYSPVSQSKTS 136
                     4666666666667777776544466666666777777777753333399999999999999*******99****98578*********4333333 PP

                     CSE...EEEEEESSTTS--EECEESSCS..........TSSECEEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGC CS
  Glyco_hydro_43  92 kqg...ifvvtadspeGpwsdpiklkts..........gssgiDpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagt 173
                     ++    i+v+ ad++eGp++d++               + + iDp++++d+  + +++wg+      ++e+ ++eld++ +++   + ++++++ 
      CCE28250.1 137 SSDpfgIGVARADKIEGPYVDHHPRGPIvsqsypapgnDIENIDPTVLVDN-DRVFMYWGT------FGELRGVELDKKDMSTFVGD-IVTVTSL 223
                     333788***************98765445679999999999**********.9********......7789*****98766665555.4555555 PP

                     CTCTTBBEEEEEEEEETTEEEEEEEESTSSTT.......EEEEEEEESSTTSGGEEECTCCSEE.TBTTSTSEEEEEEEEEE-TTSSEEEEEEEE CS
  Glyco_hydro_43 174 elkglkvtEGPhlykrdgyyYLlaaeggtgse.......yavvvarsksllgPyewkkknpiltsrspeepiqgpGHaslvetpdgewyivyhag 261
                           + E+ +l+kr+++yY+++a++ +g+e       ++  +++s+ +lgP  w+++  il         + + H + v  +d+ wy+vyh+ 
      CCE28250.1 224 ----NGFFEAAWLMKRGETYYMIYAANNVGKEctptlyhACLAYGTSSGPLGP--WTYRGVILGI-----VSSTTSHSGAVAIKDQ-WYLVYHTA 306
                     ....4689*****************7777777544442244445*********..8888888886.....4677889999999665.******** PP

                     SCCTTCCGTTSSEEEEEEEEEETT CS
  Glyco_hydro_43 262 rpegrglytlgRetllqrvewkaD 285
                     +   + + ++ R+++ ++++++ D
      CCE28250.1 307 DA--HSGGNFRRSVAFDKMDFD-D 327
                     **..99999************9.6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 4007.85
//
Query:       CCE28251.1  [L=401]
Description: uncharacterized protein CPUR_01725 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-13   49.0   0.0    1.2e-12   48.0   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
    1.6e-05   25.5   0.0    5.9e-05   23.7   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
      0.002   17.9   0.0      0.026   14.3   0.0    2.2  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.057   12.7   0.0       0.15   11.4   0.0    1.7  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   2.7e-16   1.2e-12      18     164 ..     144     301 ..     120     302 .. 0.85

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 2.7e-16
  Methyltransf_23  18 pklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpd.ppellrqiatl 108
                      +k+r++  +Ld+++GtG+++  + + +   ++++ Dlsp++   +  +++ ++  +d++++++ + kf +I+ r + +   +    + +q+++ 
       CCE28251.1 144 DKRRPPRHILDVATGTGEWAIQMGDLFPgsEIIATDLSPIQPLQV--PPNVNFYVEDSSDIWDYSHKFGYIHTRVTGGCWWSfEKQVAQQAFDA 235
                      6699999****************8875455*********977775..899999999999**************977655554167899****** PP

  Methyltransf_23 109 lkpgGylllseplasl.............kedrllldwlylvpagrhisffsarslkelleeaGlevve 164
                      l+pgGyl+ +e++                + +++ +d++++ ++  h+   + + lke +++ G+ +v+
       CCE28251.1 236 LEPGGYLESQEYD--FfigcddgtmnpdgPLAQWSRDITLAGER-CHRPTTTGQFLKEVFQRIGFVDVQ 301
                      ***********84..3457788999999889999999*999999.********************9997 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.3e-08   5.9e-05       1      97 []     152     240 ..     152     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.3e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      +Ld+++GtG++++++ + ++ ++++++D+s+ +  ++        +nv+f++ d +d+   +++f +++ + +   ++ +  +++ ++++++L+
       CCE28251.1 152 ILDVATGTGEWAIQMGDLFPGSEIIATDLSPIQPLQVP-------PNVNFYVEDSSDIWDYSHKFGYIHTRVTGG-CWWSFEKQVAQQAFDALE 237
                      8******************55**********8877553.......5789*********99999*******75533.44445579********** PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       CCE28251.1 238 PGG 240
                      **9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.8e-06     0.026       6     113 ..     151     248 ..     147     296 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.8e-06
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevl.naladpdkileei 97 
                      ++lD+++GtGe ++++   l+p++e++  D s+  i+  +         nv+F ++d  +  +  ++  kf +i+++ +  +  ++ +++ +++
       CCE28251.1 151 HILDVATGTGEWAIQMG-DLFPGSEIIATDLSP--IQPLQV------PPNVNFYVEDSSDiWD--YS-HKFGYIHTRVTGgCWWSFEKQVAQQA 232
                      69***************.889*********999..333333......4499999999999666..77.89999999766699999999999999 PP

  Methyltransf_31  98 ervlkpggilliedpr 113
                      +++l+pgg+l +++++
       CCE28251.1 233 FDALEPGGYLESQEYD 248
                      9999999999888777 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.5   6.5e+03     188     200 ..      85      97 ..      82      98 .. 0.82
   2 ?   11.4   0.0   3.4e-05      0.15      43      69 ..     144     170 ..     137     184 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.5
                      HHHHHHHHHHS-- CS
  Ubie_methyltran 188 yryLvesirafPd 200
                       + L +s+++fP+
       CCE28251.1  85 SQSLSDSVQDFPE 97 
                      57899*******7 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.4e-05
                      --S--TTEEEEES-TT-HHHHHHHHHH CS
  Ubie_methyltran  43 vavkrgakvlDvagGtgDlafklsdsv 69 
                      +  ++++++lDva+Gtg++a+++ d  
       CCE28251.1 144 DKRRPPRHILDVATGTGEWAIQMGDLF 170
                      5678899***************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3229.24
//
Query:       CCE28252.1  [L=369]
Description: uncharacterized protein CPUR_01726 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-33  116.3   0.0    2.4e-33  115.6   0.0    1.2  1  Peptidase_M48  Peptidase family M48


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.0   1.4e-37   2.4e-33       6     184 ..     156     331 ..     152     334 .. 0.85

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 1.4e-37
                    HHHHHHHHHHHHTT-..-EEEEEEE-GGGT.-EEEEESSS-EEEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   6 elkevveelakeaglpkpltkvyvvnspkr.NAFalgggknkrivltdgLlkqllseeelaaVlGHElGHikhrhsvvslivsllasillllglal 100
                     +k+v+++l+  +glp+ +++++vv ++++ NAF+++gg   ++v+++gL++ + se+ laaVlGHE++H ++ h++++++ + l ++  + ++ l
     CCE28252.1 156 LVKRVMRKLIPVSGLPDLNWEISVVANNSIvNAFVYPGG---KVVVYSGLISMCGSEDALAAVLGHEIAHTTASHAAERMSAAWLVNFTAGSLSYL 248
                    589********************99888878********...**********************************************99988875 PP

                    HTT-SHHHHHTT--S---HHHHHHHHHHTTHHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHH.HHS-SS-- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Peptidase_M48 101 lisraeedaagafldalavliglliillflalSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrs.ellstHPp 184
                    l +    ++a+a   +    + l  +l  l+++Rk+E +AD +g+ ++++a++++r ++ +++++e ++++   +  e+lstHP+
     CCE28252.1 249 LAGP-YVATAFALW-RYFSDFDLAAFLCYLPMGRKQEVEADYVGLMMMAEACYNPRLAVGFWQRAEAMQRAYGVECpEFLSTHPS 331
                    5543.444444443.233344556666667***********************************997776554445*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 2924.55
//
Query:       CCE28253.1  [L=84]
Description: probable cytochrome b5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-22   79.6   0.1    1.6e-22   79.5   0.1    1.0  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.1   8.7e-27   1.6e-22       1      74 []       6      79 ..       6      79 .. 0.94

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 8.7e-27
                EHHHHTTTECTT.EEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEEEC CS
      Cyt-b5  1 tleelskhngkn.dlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkylvGkla 74
                t ++++kh+++   +w++++++VYD++kfl +hpGg+ +++++aGk+at+af+++ hse++++k+ +ky++G++a
  CCE28253.1  6 TVADVQKHKTEAdGIWLIVENNVYDITKFLPEHPGGDRILKRFAGKNATKAFWKY-HSESVLKKYGDKYKIGTVA 79
                5789*****66559*****************************************.*********999****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 708.97
//
Query:       CCE28254.1  [L=203]
Description: uncharacterized protein CPUR_01728 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-39  135.9   1.0    1.8e-39  135.5   1.0    1.2  1  Blt1       Blt1 N-terminal domain
    6.3e-18   64.1   0.4    1.1e-17   63.3   0.4    1.4  1  Blt1_C     Get5 carboxyl domain
    1.1e-06   28.3   0.1    2.2e-06   27.3   0.1    1.5  1  ubiquitin  Ubiquitin family


Domain annotation for each model (and alignments):
>> Blt1  Blt1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.5   1.0     3e-43   1.8e-39       1     150 []       6     140 ..       6     140 .. 0.94

  Alignments for each domain:
  == domain 1  score: 135.5 bits;  conditional E-value: 3e-43
        Blt1   1 FaksflaalDsrpvklsadhveDprsyparvpytLprlskphpempkkvkkaaapgssksitvhlksarnpalelsldnvalattsvkdlkeavqervk 99 
                 Fa++fl++lDsrpvklsadhveD rs+par +y+Lpr+++  +  p    k+  pg  +sitv lks rnp l++ l + +  +tsv d+k  v+e+  
  CCE28254.1   6 FARTFLSSLDSRPVKLSADHVEDLRSFPARPAYILPRMPTSMS-KP----KTVLPGQERSITVVLKSLRNPPLDVKLASQP-LSTSVLDIKARVAEQ-- 96 
                 99***********************************987543.34....5789************************999.689************.. PP

        Blt1 100 eaetkvpldkikiLykkkPvsg.ktlaevlasesevleggkevElgvmvlgG 150
                    t++p++k+k+L++k+P ++ k +++++++     ++++++El+vmv+gG
  CCE28254.1  97 ---TRIPVEKLKLLHNKRPLTDsKIIKDIVGD-----DATSKIELSVMVIGG 140
                 ...*****************999*********.....8999**********9 PP

>> Blt1_C  Get5 carboxyl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.4   1.9e-21   1.1e-17       2      51 .]     150     199 ..     149     199 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 1.9e-21
      Blt1_C   2 pkaavgpsgeeVLatEeFWdDLegFleqRvKDeeeaerlrgvFkeAWess 51 
                 +++++++sg++ L t++FW+DL+gFl qR+KDee+a ++  +Fk  Wess
  CCE28254.1 150 AAVPAAASGQDALTTDAFWEDLNGFLLQRLKDEETAGQMGRLFKASWESS 199
                 5677899*****************************************97 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   3.6e-10   2.2e-06      16      67 ..      81     133 ..      65     137 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 3.6e-10
                 ETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGH.TTSTTEEEEE CS
   ubiquitin  16 eesdtveelKekiaekegipaeqqrLiysGkvLedertleey.giqdgstlhl 67 
                 + s++v+++K+++ae+++ip+e+++L+++ ++L d++ ++++ g +  s+++l
  CCE28254.1  81 PLSTSVLDIKARVAEQTRIPVEKLKLLHNKRPLTDSKIIKDIvGDDATSKIEL 133
                 5799*************************************966666677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1504.92
//
Query:       CCE28255.1  [L=153]
Description: related to cofilin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-38  131.2   0.3    1.8e-38  131.0   0.3    1.0  1  Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
  ------ inclusion threshold ------
       0.15   10.2   0.0        0.2    9.8   0.0    1.2  1  Rota_VP2     Rotavirus VP2 protein


Domain annotation for each model (and alignments):
>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.3     2e-42   1.8e-38       1     120 [.      12     145 ..      12     146 .. 0.92

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 2e-42
                  HHHHHHHHCTTT.SSEEEEEEECTTTEEEEEESS-..HHHHHHHHH....HTTT.........-EEEEEEEEEECCS.ECCEEEEEEEEE--TTS-HH CS
  Cofilin_ADF   1 lkeafkelksgkktkyilfkidddkeeivveeege..tyeelreel....pese.........prYavydveyehdd.eskrsklvfIswvPdsapik 82 
                  +++a+++lk++kk+k+i+fk++dd ++iv+e+ ++  ++e++re+l    +  +         +rYavyd+ey+  +  + r+k++fI+w+Pd+a+++
   CCE28255.1  12 CITAYNDLKLSKKYKFIIFKLSDDFKQIVIEDASTdgDWENFREKLinstT--KsksgavgkgCRYAVYDFEYNLASgDGVRNKITFIAWSPDDASVQ 107
                  89******************************55568*********66541..1567788888************99899****************** PP

                  HHHHHHHHHHHHHHHCTTSEEEEEE-CGGCCSHHHHHH CS
  Cofilin_ADF  83 qkmlyasskdalkkelkgisveieatdldelteeelke 120
                   km+yassk+alk++l+g+++e++a+d+d+++++++ +
   CCE28255.1 108 PKMIYASSKEALKRTLTGVAHELQANDADDIEYDSIIK 145
                  **********************************9976 PP

>> Rota_VP2  Rotavirus VP2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   2.2e-05       0.2     701     767 ..       6      69 ..       1      80 [. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 2.2e-05
    Rota_VP2 701 ekiaqgvllayrdmqlervedvglvnvirdldsfqiinleeleksgdyaaitnallrdtpvilkgal 767
                   ++q  + ay+d++l ++ ++    + +  d f++i +e+    gd+ +  + l++ t     ga+
  CCE28255.1   6 ATVSQDCITAYNDLKLSKKYKFI---IFKLSDDFKQIVIEDASTDGDWENFREKLINSTTKSKSGAV 69 
                 57899**********99875543...5667799************************9988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1212.66
//
Query:       CCE28256.1  [L=585]
Description: probable heat-shock protein hsp60 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-87  292.4  14.5    1.8e-86  290.7  14.5    1.7  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.7  14.5     1e-90   1.8e-86       1     485 [.      54     555 ..      54     561 .. 0.93

  Alignments for each domain:
  == domain 1  score: 290.7 bits;  conditional E-value: 1e-90
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHH....HHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPa....akllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegye 95 
                 la++v+ttlGPkG+++++++++g++++T+DG+t++k + +++      a+ll+++a+++++ +GDGTtt+++La+++ +e+ k +aag +p ++++g++
  CCE28256.1  54 LAKAVATTLGPKGRNVLIESSYGSPKITKDGVTVAKAISLKDKFenlgARLLQDVASKTNDVAGDGTTTATVLARAIFSETVKNVAAGCNPMDLRRGIQ 152
                 799************************************************************************************************ PP

                 HHHHHHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECEC..TTSEEESEEEESS--SS CS
  Cpn60_TCP1  96 kalekaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsl..edselveGlvldkgvls 192
                  a+++++++L e +++i ++    +e+++va++s++++       ++++++++A+          ++g+ +v+++++g+   ++ e+ eG+ +d+g++s
  CCE28256.1 153 AAVDAVVKYLHEQKRDITTS----SEIAQVATISANGD------VHVGEMIANAM---------EKVGKEGVITVKEGKTmsDELEVTEGMRFDRGFVS 232
                 **********9998888887....9*************......9**********.........79************9955666777*********** PP

                 T.......TSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S-... CS
  Cpn60_TCP1 193 p.......dmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrv... 281
                 p         + ++en+ +ll +++++  ++                        + + le  +++ +++v+++++id +al+++  n++++  +v   
  CCE28256.1 233 PyfitdakAQKVEFENPLILLSQKKISAVQD------------------------IIPALEISTQTRRPLVIIAEDIDGEALAVCILNKLRGQLQVaav 307
                 *9999765556667*****************........................99****************************************** PP

                 ........-HHHHHHHHHHHT--EBSCG.....GGGGCGC-EEEEEEEECCETTCCEEEEE....................................CE CS
  Cpn60_TCP1 282 ........kkkdlerlakatGatavssl.....edltpeelGtakkveeekigsekttiie....................................ev 331
                         +k+ l ++  +t++t++++      e+ t + lG+ +++   +i++e+t+i++                                      
  CCE28256.1 308 kapgfgdnRKSILGDIGVLTNGTVFTDEleiklEKATIDMLGSTGSI---TITKEDTIILNgdgskdaiaqrceqirgvsadpttseyekeklqerlAK 403
                 ***************************9555555555555*******...***********99999999988888877777777776666666555533 PP

                 SSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHH CS
  Cpn60_TCP1 332 ksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlak 430
                 +sg++a+i+++g++++++ e++++  dAln++++a+e e+++pGGG ++++++++  +  k  + ++ql+i+++++A++ +++t++eNaG+++  ++ k
  CCE28256.1 404 LSGGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVE-EGILPGGGTALIKASAQALKDVKAANFDQQLGINIVKSAITRPARTIIENAGMESSVIIGK 501
                 9************************************.************9998877999999************************************ PP

                 HHHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEE CS
  Cpn60_TCP1 431 lraahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLride 485
                 l+++h+++  + g+d ++ge++d++eag++Dplkv+r +l  A+ +as++ +++ 
  CCE28256.1 502 LMDEHATNF-HKGFDSAKGEFVDMIEAGILDPLKVVRTGLVDASGVASLLGTTEV 555
                 *****9999.*************************************98766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4473.77
//
Query:       CCE28257.1  [L=440]
Description: related to RNA-binding protein cabeza [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3474.78
//
Query:       CCE28258.1  [L=192]
Description: uncharacterized protein CPUR_01732 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1525.93
//
Query:       CCE28259.1  [L=178]
Description: uncharacterized protein CPUR_01733 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1482.23
//
Query:       CCE28260.1  [L=755]
Description: uncharacterized protein CPUR_01734 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-07   30.2   0.0      9e-07   28.5   0.0    1.9  2  Pkinase         Protein kinase domain
    4.3e-05   22.5   0.2     0.0016   17.3   0.0    2.2  2  Pkinase_fungal  Fungal protein kinase
    8.6e-05   22.6   0.1    0.00022   21.3   0.1    1.6  1  APH             Phosphotransferase enzyme family
    0.00031   20.1   0.0    0.00068   19.1   0.0    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.092   12.7  11.6       0.17   11.9  11.6    1.3  1  Mucin           Mucin-like glycoprotein
       0.12   11.9   0.1       0.68    9.5   0.0    2.1  2  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.3     7e+03     146     179 ..     503     536 ..     499     536 .. 0.77
   2 !   28.5   0.0     3e-10     9e-07     102     152 ..     673     724 ..     661     739 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.3
                 EESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHH CS
     Pkinase 146 kelessskltsfvgtseYlAPEvlkeneyskkvD 179
                 k+ + + k++s v+ + Y+  E +++  ++++ D
  CCE28260.1 503 KRPDGRRKMQSDVVNRSYCTHECVRGLAFGTPLD 536
                 55556667999999*****999999888877766 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 3e-10
                 HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSC CS
     Pkinase 102 kiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesss 152
                 ++++++l +l+ lH+++++HrD  p N+L+d ++g ++++D+ l++ ++ + 
  CCE28260.1 673 SVVREVLDALAQLHQRRVMHRDAEPRNMLYDaRTGRFMVIDLELSEPIDGGV 724
                 6899***************************99999********99887765 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.011        34     232     281 ..     215     257 ..     151     341 .. 0.57
   2 !   17.3   0.0   5.2e-07    0.0016     286     366 ..     650     724 ..     430     738 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.011
  Pkinase_fungal 232 kfrskrkvvsssssqelsskaevklkksesskkvekrsvdssvstskrsr 281
                     +f+s++++ s+++++e       +++k ++++k+++++  ++++++kr+r
      CCE28260.1 215 DFQSHKNTRSKKTKTE-------TGTKTKTKTKTKTKTKTETTTKTKRTR 257
                     2333222222222211.......111111111111111111112222222 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 5.2e-07
  Pkinase_fungal 286 vhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsdds 366
                     + ++l +s +Gkp+ ka s+ +  +++r+++ ++ +L+ + +++HrD    N+l       ++ + ++iDL+l   ++   
      CCE28260.1 650 FRHFLFLSYAGKPVLKALSKVDN-SVVREVLDALAQLH-QRRVMHRDAEPRNMLYD----ARTGRFMVIDLELSEPIDGGV 724
                     567899999**********9997.99************.*************7766....67899*******998777555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   7.3e-08   0.00022     148     197 ..     670     718 ..     619     721 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 7.3e-08
                 HHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 148 leeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 ++  v +++++ l+   +++++H+D  p+N+l d++ gr+  viD+e++ 
  CCE28260.1 670 VDNSVVREVLDALAQLHQRRVMHRDAEPRNMLYDARTGRF-MVIDLELSE 718
                 334455555555555677****************999999.9****9875 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.3e-07   0.00068     119     171 ..     670     719 ..     663     727 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.3e-07
         Kdo 119 lkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarl 171
                 + +  +++v  + a+lh++ v+H+d  ++n+l +++     ++++iDl+ +++
  CCE28260.1 670 VDNSVVREVLDALAQLHQRRVMHRDAEPRNMLYDART---GRFMVIDLELSEP 719
                 5566788888999**********************98...8*******98876 PP

>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  11.6   5.7e-05      0.17      40      89 ..     215     262 ..     201     287 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.7e-05
       Mucin  40 egqskltttttttkppttttttttasttittkttkattttttttttttat 89 
                 + qs+++t +  tk+ t t+t t  ++t +tkt + ttt t+ t++++at
  CCE28260.1 215 DFQSHKNTRSKKTKTETGTKTKT-KTKT-KTKTKTETTTKTKRTRSAAAT 262
                 33444444444444443333322.1111.112222222222222222222 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.53   1.6e+03      53     120 ..      15      82 ..      13      97 .. 0.62
   2 ?    9.5   0.0   0.00023      0.68     146     175 ..     689     718 ..     664     723 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.53
                     TCEE--TTGGGCHHHHHHHHHHHHHHTTCHH.TTSSSS-HHHHHHHHHHHCCS.TT..ECHHGGCCHC CS
  Choline_kinase  53 esrtlstedlrepeiskkiAkklaelHsleleseskespslwktmqkwllnkeaqtkakkekkkkqlk 120
                     ++ t + +d   ++ s+ +Ak l   H+  ++++s+ s     ++ + l++ eaq + +k    k  +
      CCE28260.1  15 HGYTSDHKDSHYTSQSSSVAKALHFKHTEIISEMSDPSVTNVAEILRRLKEAEAQVELQKLRAVKAEE 82 
                     56677777777788899999999999999886666655444444444435555555555444444444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00023
                     EEE-S--SGGGEEE.-CTTEEEE--GTT-E CS
  Choline_kinase 146 vfcHnDlqegNillnkeekklvlIDFEYag 175
                        H D  ++N+l++  +++ ++ID E + 
      CCE28260.1 689 RVMHRDAEPRNMLYDARTGRFMVIDLELSE 718
                     456***********************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1607  (0.0896313); expected 358.6 (0.02)
Passed bias filter:                      767  (0.0427799); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 5168.15
//
Query:       CCE28261.1  [L=754]
Description: uncharacterized protein CPUR_01735 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.5e-149  498.8   3.7   1.9e-149  498.5   3.7    1.1  1  NPR3        Nitrogen Permease regulator of amino acid transpo


Domain annotation for each model (and alignments):
>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  498.5   3.7    1e-153  1.9e-149       1     466 [.      99     559 ..      99     560 .. 0.87

  Alignments for each domain:
  == domain 1  score: 498.5 bits;  conditional E-value: 1e-153
        NPR3   1 gfdseflaellsPerelcntrFeltvDdlaFlGlPvhvdedgkwrkskkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseeke 99 
                 gf++++la++l+P r++ ++ F+l++D++ ++++P+hv+edgkw+++kk +k++k     ++ +k++k+s++++ ++++++++++k+s+ +++++++k+
  CCE28261.1  99 GFPTRDLASILTPARSYDKKLFQLSLDPIHCISYPIHVPEDGKWKRNKKIHKANK----LNRANKTNKTSKANKAGKNSRTNKANKTSKTSKASKASKS 193
                 8**********************************************65443322....2233333333333333333333333333333333333333 PP

        NPR3 100 sne..eeeeeededdeesek.................eeeekedkkknltmFhlvfvlnPplseynsrvdemYenvvkklsaalkyeQaksdYVskEce 179
                 s++  + + + +e ++                     ++  +++k++++tmF+lvf+lnP++se +  vd +Y nvvkk+++alky Q + d+V+kE++
  CCE28261.1 194 SRHtaDYQLAPHEAET---PmpsiflsadaakdkdpkKDGADDEKRSSMTMFNLVFILNPRKSEGKALVDALYPNVVKKVNKALKYSQYQYDFVWKESK 289
                 3330022222222222...1356888888999999989999999******************************************************* PP

        NPR3 180 kilklkekalkeskklkelyreilekSsLAraltelyesisknkiAslel...nddvtislqiPiktefsklpnekeeavlpgsyltsilneseseede 275
                 +il++k++a++e+k++++l++e++++SsLA++l+++ye++  nkiA+l+l    + +t s+qiP ++ +s++p+e++++ ++g++lt++  +s+ +++ 
  CCE28261.1 290 RILSAKDRAREERKPMAALWKELIQTSSLASSLHDIYEAVCLNKIATLHLetpAGILTPSFQIPAPFFVSDIPSEHDNSPQRGLWLTTA--NSFLRRE- 385
                 **************************************************877788999********************9*********..6777776. PP

        NPR3 276 eeeeekfLeknyaLLlLddekkiikelekssaeddeltvllaelvralkptlslaeyaslldedleeeqvsesnslelsqirslarhLiywRrArvIdp 374
                 + ++ +fL+kn+aLLlL+dekkii+el   +a++d++t++++e+ r +kpt+s++             qv +s+ l+ sq+r++a+h+i+wRrA++++p
  CCE28261.1 386 QLDNVEFLDKNFALLLLEDEKKIIAEL---EADQDTTTPSMVEFARLAKPTMSFH-------------QVCQSKILTSSQVREYAQHFIFWRRAIAVPP 468
                 467889*********************...99***********************.............788999************************* PP

        NPR3 375 lssrdvYivsPladlskleqasaeFkekFpslPsLpkfLsaLSsskprpfssiipskehrelYleaLaWLlrkglvtqlltfarirvdkeik 466
                 l+ rdvYivsP++d+s+l+q++ e++++Fp++P+Lp+fLs+LS ++prpf+s++psk +r+lYl++LaWLlr+g+vtql+tfa+++v++ei 
  CCE28261.1 469 LHDRDVYIVSPNCDVSRLPQDTVEWQRAFPQAPTLPNFLSELS-QAPRPFKSFCPSKPQRPLYLSMLAWLLRGGWVTQLCTFAYVVVWPEIL 559
                 *******************************************.68********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1555  (0.086731); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 5207.16
//
Query:       CCE28262.1  [L=409]
Description: related to ethanolamine kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-48  165.5   0.0    2.2e-48  164.7   0.0    1.4  1  Choline_kinase  Choline/ethanolamine kinase
    1.2e-10   41.8   0.1    1.9e-10   41.1   0.1    1.3  1  APH             Phosphotransferase enzyme family
    6.4e-05   22.4   0.0    0.00012   21.5   0.0    1.4  1  EcKinase        Ecdysteroid kinase
  ------ inclusion threshold ------
       0.04   12.8   0.0      0.064   12.1   0.0    1.2  1  DUF1679         Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.7   0.0   4.8e-52   2.2e-48       3     212 ..      80     307 ..      78     308 .. 0.92

  Alignments for each domain:
  == domain 1  score: 164.7 bits;  conditional E-value: 4.8e-52
                     SEEEEEEE-TTCTTCCHHHHHHHHHHHHHHTTSSS-EEEEETTEEEEE--TCEE--TTGGGCHHHHHHHHHHHHHHTTCHH.............. CS
  Choline_kinase   3 kkvllRiygkkteelidretElvvfallserglgpklygifenGrieefiesrtlstedlrepeiskkiAkklaelHslel.............. 83 
                       vllR yg++t+ lidre+E+ +++ll++++l+p+l+++f nG++++fi++   +++dl +p ++++iA++la++H++++              
      CCE28262.1  80 DAVLLRAYGNGTDVLIDREREAANHELLMQHNLAPELLARFGNGMLYRFIPGIVAQPKDLADPPVLRAIAQRLAQWHATVPcfpdlslpgnssss 174
                     689******************************************************************************************** PP

                     ...............TTSSSS-HHHHHHHHHHHCCS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHHHCHGG-EEEE-S--SGGGEEE....- CS
  Choline_kinase  84 ..............eseskespslwktmqkwllnkeaqtkakkekkkkqlklinledlekelekleklleelespvvfcHnDlqegNill...nk 161
                                    + +k  p++w+tmqkw      ++ +++e++++  k++  ++l++++++l +     ++ +vf+H+Dl+  Ni+    ++
      CCE28262.1 175 gdsdnnvnsaviakAAAGKLIPNVWTTMQKW----ILALPTDTEPRRE-RKSLLQKELDETIQRLAQRPGLGHNGLVFSHCDLLCANIIInrdAD 264
                     ************99889999***********....4444445555444.456667999***********9********************66667 PP

                     CTTEEEE--GTT-EEEEHHHHHHHHHHHTTEEHHHCSTSHEE-GGGS--HH CS
  Choline_kinase 162 eekklvlIDFEYagynyrgfDlanhfiEwagdyeeeeaffkldyskypsre 212
                        ++ +ID+EY ++++++fD+anhf+Ewag        + +dys +ps++
      CCE28262.1 265 AGTSVSFIDYEYGTPSPVAFDIANHFAEWAG--------YSCDYSAIPSHS 307
                     7889***************************........899999999876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.1   4.2e-14   1.9e-10      23     232 ..      82     318 ..      73     325 .. 0.64

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 4.2e-14
                 EEEEEE-TT.S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH......-STTTB CS
         APH  23 yvlrrnppa.raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqv.....dpaalpl 115
                 ++lr +  + +   + +re+a   lL ++++ +Pe+la    + ++g+l+++i+++ +++ +       +p +l+a+++ la+ h++     d      
  CCE28262.1  82 VLLRAYGNGtDVLIDREREAANHELLMQHNL-APELLA----RFGNGMLYRFIPGIVAQPKDL-----ADPPVLRAIAQRLAQWHATvpcfpD------ 164
                 5567777773333444566666688889988.******....889999999999998888777.....5566666666666666666222220...... PP

                 -.................................SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S.SS-EEEE-SS-SGGGEEE CS
         APH 116 a.................................dflaqdlellrqlesatarllaselldlleeleeqvlaalaallpg.elptvllHgDlhpgNllv 180
                                                   + + q + l+   + + +r ++s+l++   el+e  +++la++    +   v+ H+Dl   N+++
  CCE28262.1 165 LslpgnssssgdsdnnvnsaviakaaagklipnvWTTMQKWILALPTDTEPRRERKSLLQK---ELDE-TIQRLAQRPGLgHNGLVFSHCDLLCANIII 259
                 1344555666666666666666666666655555333332222222222222555566666...6666.566555554446799*************** PP

                 C.....TTEEEEE---TT-EEEECCHHHHCCH.......HHCSCHCCCHCHHHHHHHHCS-H CS
         APH 181 d...pddgrvtGviDfedaglgpplyDlavll.......rswtseldpeflaallrayeqea 232
                 +   ++++ v  +iD e+ +++p+++D+a +         ++    + +++ a++r+y   +
  CCE28262.1 260 NrdaDAGTSV-SFIDYEYGTPSPVAFDIANHFaewagysCDYSAIPSHSQRLAFVREYI--G 318
                 ***6555665.9****************8888444333323355555777777777775..4 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.7e-08   0.00012     117     260 ..     145     289 ..     137     295 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.7e-08
    EcKinase 117 lklvlkkLAkfHAaSlalke..ekpevfkelk.kglleedyvssalkeafeelleellkaalealreelpelekeaekleklkenlferllelveekee 212
                 l+++ ++LA++HA+  ++    +  ++ ++ + ++ +++  +++a   ++ + + +++++ + al ++ +  ++ +  l+k  ++ ++rl++       
  CCE28262.1 145 LRAIAQRLAQWHATVPCFPDlsLPGNSSSSGDsDNNVNSAVIAKAAAGKLIPNVWTTMQKWILALPTDTEPRRERKSLLQKELDETIQRLAQRP-GLGH 242
                 5788899******999888854333333333335666777777777777888888888888888877777776677777777777777777777.7777 PP

    EcKinase 213 efnvlnHGDlwvnNimfkydeegepedvilvDFQlsrygSpalDLlyf 260
                 +  v+ H Dl + Ni+++ d++ + ++v ++D+ +   +++a+D++  
  CCE28262.1 243 NGLVFSHCDLLCANIIINRDAD-AGTSVSFIDYEYGTPSPVAFDIANH 289
                 788**************99866.89********************865 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.4e-05     0.064     264     312 ..     240     288 ..     217     293 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.4e-05
     DUF1679 264 lGi.kkvlvhgDlwsaNiLfseeeegklklkkviDyQlvslgnpaeDlvr 312
                 lG+   v+ h Dl+ aNi+ +++ ++  +++  iDy   + ++ a+D++ 
  CCE28262.1 240 LGHnGLVFSHCDLLCANIIINRDADAGTSVS-FIDYEYGTPSPVAFDIAN 288
                 788778****************999777765.89***9999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3105.54
//
Query:       CCE28263.1  [L=333]
Description: uncharacterized protein CPUR_01737 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2587.83
//
Query:       CCE28264.1  [L=857]
Description: uncharacterized protein CPUR_01738 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.067   13.9   2.8        0.1   13.3   0.1    2.5  2  zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
       0.85   10.1   6.2       0.46   11.0   2.3    2.5  2  zf-TAZ        TAZ zinc finger
        2.5    8.7  23.0         16    6.2   0.1    6.2  6  zf-C2H2       Zinc finger, C2H2 type
        6.5    7.4  16.3        5.1    7.7   1.1    5.4  5  zf-H2C2_2     Zinc-finger double domain
        8.4    6.5  11.2         12    6.1   0.1    4.4  5  zf-BED        BED zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3       1.4   4.8e+03      60      95 ..     630     663 ..     614     675 .. 0.57
   2 ?   13.3   0.1   2.9e-05       0.1      17      52 ..     781     816 ..     771     823 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.4
  zf-C2H2_3rep  60 fklskvaqkknlsasedssqklelsksasvennsen 95 
                    k+s+  ++++++  ++ssq ++ls+s++v++ +e+
    CCE28264.1 630 PKQSNRCRQTRQP--SQSSQPSQLSQSSQVNEAHES 663
                   4444444433333..334444555555555544444 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.9e-05
  zf-C2H2_3rep  17 hvqerhhvqfveqclllqcipcgshfgnaeelwlhv 52 
                   h ++     ++++ +  qc  cg hfgna+e++ h+
    CCE28264.1 781 HARDERASSSLQRNMGAQCSICGDHFGNAQEFYEHL 816
                   66666666788899999*****************96 PP

>> zf-TAZ  TAZ zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.3   0.00013      0.46      21      56 ..     664     712 ..     630     727 .. 0.72
   2 ?   -1.1   0.1      0.76   2.7e+03      22      42 ..     801     819 ..     773     826 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
      zf-TAZ  21 e...........kCkklpsC.kkmkellkHlksckkk..keCkvkvCksl 56 
                 +           +C+  p+C +++k+l +H+ + +++  ++C ++ C+  
  CCE28264.1 664 SslgnrpadsrsQCP-NPECgRSVKDLTAHMLTHQEErpEKCPIRSCEYH 712
                 0455555556669*6.99995689**********9444568******865 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.76
      zf-TAZ  22 kCkklpsCkkmkellkHlksc 42 
                  C    +  +++e+++Hl++c
  CCE28264.1 801 IC--GDHFGNAQEFYEHLDEC 819
                 23..24445566666666666 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.0     0.026        93       2      22 ..     455     478 ..     454     480 .. 0.88
   2 ?   -1.3   0.0       1.1   3.9e+03      13      23 .]     521     532 ..     509     532 .. 0.78
   3 ?    6.2   0.1    0.0045        16       2      23 .]     676     696 ..     675     696 .. 0.86
   4 ?    3.7   1.5     0.028     1e+02       3      23 .]     704     729 ..     703     729 .. 0.85
   5 ?    5.2   0.0    0.0089        32       2      23 .]     735     764 ..     734     764 .. 0.95
   6 ?    1.6   0.1      0.13   4.5e+02       2      20 ..     798     816 ..     798     818 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.026
                 EETTTT...EEESSHHHHHHHHHC CS
     zf-C2H2   2 kCpdCg...ksFkrksnLkrHirt 22 
                 +C++C+   + F+  ++LkrH   
  CCE28264.1 455 YCDKCDehlEGFRGEHELKRHTDA 478
                 59*******************865 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.1
                 HHHHHHHHHC.C CS
     zf-C2H2  13 ksnLkrHirt.H 23 
                  +n  +H+r+ H
  CCE28264.1 521 YYNAAAHLRRaH 532
                 577789***999 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0045
                 EET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCp..dCgksFkrksnLkrHirtH 23 
                 +Cp  +Cg+s     +L++H+ tH
  CCE28264.1 676 QCPnpECGRSV---KDLTAHMLTH 696
                 68888899998...99999*9999 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.028
                 ET..TTT...EEESSHHHHHHHHHCC CS
     zf-C2H2   3 Cp..dCg...ksFkrksnLkrHirtH 23 
                 Cp   C    k F rk++ +rH  tH
  CCE28264.1 704 CPirSCEyhsKGFARKYDKNRHALTH 729
                 66667777779*************99 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.0089
                 EETTTT.......EEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCpdCg.......ksFkrksnLkrHirt.H 23 
                 +Cp C+       k F r + +krH+ t H
  CCE28264.1 735 VCPFCPgigssyeKIFGRADVFKRHLATtH 764
                 7999*9*********************999 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.13
                 EETTTTEEESSHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                 +C++Cg  F +  ++  H+
  CCE28264.1 798 QCSICGDHFGNAQEFYEHL 816
                 7*****9999999998886 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.5       0.1   3.7e+02       8      21 ..     446     460 ..     444     462 .. 0.80
   2 ?   -3.2   0.2       3.9   1.4e+04       2       9 ..     472     480 ..     471     480 .. 0.70
   3 ?    7.7   1.1    0.0014       5.1       1      23 [.     688     712 ..     688     714 .. 0.90
   4 ?   -0.0   0.2       0.4   1.4e+03      16      21 ..     735     740 ..     723     741 .. 0.78
   5 ?    4.0   0.0     0.022        77       3      26 .]     757     808 ..     756     808 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.1
   zf-H2C2_2   8 kHtge.kpyeCplCd 21 
                  H+++ +++ C++Cd
  CCE28264.1 446 YHRPPvRRVYCDKCD 460
                 57866699******8 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.9
   zf-H2C2_2   2 LrrHir.kH 9  
                 L+rH+  kH
  CCE28264.1 472 LKRHTDaKH 480
                 899984466 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0014
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdka 23 
                 +L+ H+ +H  e+p +Cp  +C + 
  CCE28264.1 688 DLTAHMLTHQEERPEKCPirSCEYH 712
                 699***************9999986 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.4
   zf-H2C2_2  16 eCplCd 21 
                  Cp+C+
  CCE28264.1 735 VCPFCP 740
                 6****7 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.022
   zf-H2C2_2   3 rrHirk.Htge.kpy..........................eCplCdkaFkt 26 
                 +rH+++ H +e +p                           +C+ C++ F +
  CCE28264.1 757 KRHLATtHNVEqTPTnnrsssslaharderassslqrnmgaQCSICGDHFGN 808
                 6788755777744433444444455666666666677777799999999976 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.024        85      16      43 ..     453     480 ..     446     481 .. 0.89
   2 ?    6.1   0.1    0.0032        12      19      43 ..     509     532 ..     507     533 .. 0.96
   3 ?   -3.3   0.1       2.7   9.6e+03      31      40 ..     685     694 ..     682     699 .. 0.67
   4 ?    1.4   0.2     0.093   3.3e+02      14      43 ..     731     764 ..     724     765 .. 0.81
   5 ?   -0.9   0.0      0.47   1.7e+03      16      24 ..     796     804 ..     787     812 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.024
                 --EETTTTEE----SSTHHHHHHHHHS- CS
      zf-BED  16 kavCryCgkilsrgggttnLkrHLrrkH 43 
                 +++C  C + l + +g + LkrH   kH
  CCE28264.1 453 RVYCDKCDEHLEGFRGEHELKRHTDAKH 480
                 89*********************77777 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0032
                 ETTTTEE----SSTHHHHHHHHHS- CS
      zf-BED  19 CryCgkilsrgggttnLkrHLrrkH 43 
                 C+ C+++  +g    n  +HLrr+H
  CCE28264.1 509 CKACMAQKQYG-AYYNAAAHLRRAH 532
                 **********9.************9 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.7
                 STHHHHHHHH CS
      zf-BED  31 gttnLkrHLr 40 
                 +++ L +H+ 
  CCE28264.1 685 SVKDLTAHML 694
                 6677778874 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.093
                 SS--EETTTTEE----....SSTHHHHHHHHHS- CS
      zf-BED  14 eqkavCryCgkilsrg....ggttnLkrHLrrkH 43 
                 ++  vC +C  i s+     g    +krHL + H
  CCE28264.1 731 RGTMVCPFCPGIGSSYekifGRADVFKRHLATTH 764
                 56778999999988888888888999****9998 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.47
                 --EETTTTE CS
      zf-BED  16 kavCryCgk 24 
                  a+C +Cg 
  CCE28264.1 796 GAQCSICGD 804
                 599****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (857 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 5648.13
//
Query:       CCE28265.1  [L=755]
Description: uncharacterized protein CPUR_01739 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-07   28.5   0.0    1.9e-06   27.5   0.0    1.5  1  Pkinase   Protein kinase domain
    9.9e-05   22.4   0.2    0.00021   21.3   0.0    1.6  2  APH       Phosphotransferase enzyme family
    0.00073   18.9   0.0     0.0014   18.0   0.0    1.4  1  Kdo       Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   3.1e-10   1.9e-06     101     151 ..     661     712 ..     648     728 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 3.1e-10
                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSS CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakeless 151
                 k+ ++++l +l+ lH+++++HrD  p N+L+d ++g  +++D+ l++ ++ +
  CCE28265.1 661 KSAVREVLDALAQLHQRRVMHRDAEPRNMLYDaRTGRYMVIDLELSEPIDGG 712
                 78899***************************99999*******99988766 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       1.9   1.1e+04      35      57 ..      51      75 ..      48      85 .. 0.62
   2 !   21.3   0.0   3.5e-08   0.00021     149     197 ..     660     707 ..     639     710 .. 0.75

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.9
                HHHHHHHHHHHHHHHTT-..B--B- CS
         APH 35 eeirrevallrlLakagv..pvPev 57
                +++ + +++lr L +a++  +v ++
  CCE28265.1 51 PSVTNVAEILRRLKEAEAqvQVQKL 75
                5667777888888887773344333 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 3.5e-08
                 HHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 149 eeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 ++ + +++++ l+   +++++H+D  p+N+l d++ gr   viD+e++ 
  CCE28265.1 660 DKSAVREVLDALAQLHQRRVMHRDAEPRNMLYDARTGRY-MVIDLELSE 707
                 44444444444444567****************999998.9****9875 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.4e-07    0.0014     119     171 ..     659     708 ..     652     713 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.4e-07
         Kdo 119 lkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarl 171
                 + +  +++v  + a+lh++ v+H+d  ++n+l +++     + ++iDl+ +++
  CCE28265.1 659 VDKSAVREVLDALAQLHQRRVMHRDAEPRNMLYDART---GRYMVIDLELSEP 708
                 667788899999***********************98...89******98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5059.01
//
Query:       CCE28266.1  [L=169]
Description: uncharacterized protein CPUR_01740 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1228.89
//
Query:       CCE28267.1  [L=131]
Description: uncharacterized protein CPUR_01741 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1036.97
//
Query:       CCE28268.1  [L=737]
Description: uncharacterized protein CPUR_01742 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-07   31.1   0.0    2.8e-07   30.2   0.0    1.4  1  Pkinase         Protein kinase domain
    1.3e-05   25.2   3.4    6.6e-05   22.9   0.0    2.3  2  APH             Phosphotransferase enzyme family
    0.00022   20.6   0.0    0.00061   19.2   0.0    1.7  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.002   17.0   0.1     0.0052   15.6   0.0    1.6  2  Pkinase_fungal  Fungal protein kinase
     0.0034   16.7   0.0     0.0069   15.7   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
  ------ inclusion threshold ------
      0.078   12.6   0.0       0.29   10.7   0.0    1.9  2  FTA2            Kinetochore Sim4 complex subunit FTA2
       0.12   12.0   0.1       0.32   10.5   0.0    1.7  2  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.1e-10   2.8e-07     102     153 ..     618     670 ..     613     702 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.1e-10
                 HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCS CS
     Pkinase 102 kiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesssk 153
                 ++++q+l+ l+ lH++g+iHrD  p NiL+d ++g  +++D+ ++k ++++ +
  CCE28268.1 618 SVVSQMLATLAQLHQRGVIHRDAAPRNILYDdRTGRYMVIDLEMSKPINEEVP 670
                 5789***************************89999**********9999876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   2.9      0.22   5.6e+02     129     162 ..      10      44 ..       2      58 .. 0.68
   2 !   22.9   0.0   2.6e-08   6.6e-05     145     198 ..     612     664 ..     600     666 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.22
                 HHCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--S CS
         APH 129 lesatarllaselld.lleeleeqvlaalaallpg 162
                 + ++ +rl++ + +d +++++e+qv++++a+ +  
  CCE28268.1  10 ELQEEKRLRQVAEEDaRVAKIERQVAEERARAAKE 44 
                 44444455555555556*******99999998875 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 2.6e-08
                 HHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 145 leeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 l ++++ v  +++a+l+   +++++H+D  p+N+l d++ gr   viD+e++++
  CCE28268.1 612 LPKFDDSVVSQMLATLAQLHQRGVIHRDAAPRNILYDDRTGRY-MVIDLEMSKP 664
                 567788888888888888899****************999999.9*****9875 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.9   4.9e+03      30      67 ..     189     224 ..     175     227 .. 0.77
   2 !   19.2   0.0   2.4e-07   0.00061     125     172 ..     621     665 ..     613     674 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.9
         Kdo  30 aalrkyyrggllgklskdlyrfklgrtravrEfrllkr 67 
                 +  ++++r  ++  +s++  + + g+ r++ Ef  +kr
  CCE28268.1 189 SFEKHMHRSDTATSVSQS--TESSGKKRIADEFCSIKR 224
                 456889999999999998..677899999999988886 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 2.4e-07
         Kdo 125 kavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlr 172
                  +  ++ a+lh++gv H+d  ++nil + +     + ++iDl+ +++ 
  CCE28268.1 621 SQMLATLAQLHQRGVIHRDAAPRNILYDDRT---GRYMVIDLEMSKPI 665
                 56667899********************998...89*******98875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.2     3e+03     232     259 ..     189     214 ..     135     242 .. 0.50
   2 !   15.6   0.0     2e-06    0.0052     311     365 ..     619     668 ..     595     692 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.2
  Pkinase_fungal 232 kfrskrkvvsssssqelsskaevklkks 259
                     +f++  +++ s + +++s+++e+++kk+
      CCE28268.1 189 SFEK--HMHRSDTATSVSQSTESSGKKR 214
                     2222..1222222222333333333333 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2e-06
  Pkinase_fungal 311 alrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsdd 365
                     ++ + ++++ +L+ + g++HrD +  Nil      +++ + ++iDL++ k ++++
      CCE28268.1 619 VVSQMLATLAQLH-QRGVIHRDAAPRNILYD----DRTGRYMVIDLEMSKPINEE 668
                     6777889999***.**************988....56899*********998864 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.7e-06    0.0069     109     160 ..     620     672 ..     612     699 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.7e-06
                  HHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEE CS
  Pkinase_Tyr 109 alqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddeyv 160
                  + q+ + ++ L+++ ++Hrd a rN+L ++++    + D  +++ i+++  + 
   CCE28268.1 620 VSQMLATLAQLHQRGVIHRDAAPRNILYDDRTgRYMVIDLEMSKPINEEVPQA 672
                  5677778899******************9854489999999999995443332 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.6   4.1e+03      32      71 ..     521     559 ..     508     570 .. 0.70
   2 ?   10.7   0.0   0.00011      0.29     168     204 ..     610     646 ..     592     649 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
        FTA2  32 kglhsiVlkvkirgkeYALKlFrfleaeeleeaeedlkip 71 
                 +g  ++++kv+   + Y L   + + + ++++  +++k+ 
  CCE28268.1 521 SGHIGHLFKVRLSPHGYTLV-AKAVGPLDWRPLIHEEKMY 559
                 46678999999999999986.6777777776555555544 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00011
        FTA2 168 keqeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 k   ++  s ++++l  l +lh+ g+++rD  ++n++
  CCE28268.1 610 KALPKFDDSVVSQMLATLAQLHQRGVIHRDAAPRNIL 646
                 5567889999*********************999975 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.5   3.7e+03      60      83 ..       9      32 ..       5      59 .. 0.66
   2 ?   10.5   0.0   0.00013      0.32     148     175 ..     636     663 ..     614     667 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
                    TGGGCHHHHHHHHHHHHHHTTCHH CS
  Choline_kinase 60 edlrepeiskkiAkklaelHslel 83
                    ++l+e++ ++++A++ a++ ++e 
      CCE28268.1  9 KELQEEKRLRQVAEEDARVAKIER 32
                    677777777777777776666665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00013
                     E-S--SGGGEEE.-CTTEEEE--GTT-E CS
  Choline_kinase 148 cHnDlqegNillnkeekklvlIDFEYag 175
                      H D  ++Nil+++ +++ ++ID E + 
      CCE28268.1 636 IHRDAAPRNILYDDRTGRYMVIDLEMSK 663
                     5************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.49
# Mc/sec: 4534.65
//
Query:       CCE28269.1  [L=717]
Description: uncharacterized protein CPUR_01743 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-06   27.7   0.0    2.9e-06   26.9   0.0    1.4  1  Pkinase      Protein kinase domain
    3.5e-05   23.9   0.7    6.9e-05   22.9   0.0    1.8  2  APH          Phosphotransferase enzyme family
     0.0017   17.8   0.0     0.0033   16.8   0.0    1.4  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.021   14.1   0.0      0.039   13.2   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
      0.058   13.0   0.0       0.22   11.1   0.0    1.9  2  FTA2         Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     8e-10   2.9e-06     103     153 ..     599     650 ..     594     681 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 8e-10
                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCS CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesssk 153
                  ++q+l+ l+ lH++g+iHrD  p N+L+d ++g  +++D+ ++k ++++ +
  CCE28269.1 599 AVSQMLATLAQLHQRGVIHRDAAPRNMLYDdRTGRYMVIDLEMSKPINEEVP 650
                 678***************************89999**********9999875 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.6       1.8   6.4e+03     146     167 ..      14      33 ..       5      37 .. 0.53
   2 !   22.9   0.0   1.9e-08   6.9e-05     145     198 ..     592     644 ..     581     646 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHH--SSS-EE CS
         APH 146 eeleeqvlaalaallpgelptv 167
                 e++ +qv++++a+ ++  ++++
  CCE28269.1  14 EKRLRQVAEERARAAR--EEHQ 33 
                 4455556666666655..3333 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.9e-08
                 HHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 145 leeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 l ++++ +  +++a+l+   +++++H+D  p+N+l d++ gr   viD+e++++
  CCE28269.1 592 LPKFDDSAVSQMLATLAQLHQRGVIHRDAAPRNMLYDDRTGRY-MVIDLEMSKP 644
                 556666666667777777788****************999999.9*****9875 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   9.1e-07    0.0033     125     172 ..     601     645 ..     592     654 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.1e-07
         Kdo 125 kavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlr 172
                  +  ++ a+lh++gv H+d  ++n+l + +     + ++iDl+ +++ 
  CCE28269.1 601 SQMLATLAQLHQRGVIHRDAAPRNMLYDDRT---GRYMVIDLEMSKPI 645
                 55567899********************998...89*******98875 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.039     111     160 ..     602     652 ..     593     679 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
                  HHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEE CS
  Pkinase_Tyr 111 qvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddeyv 160
                  q+ + ++ L+++ ++Hrd a rN+L ++++    + D  +++ i+++  + 
   CCE28269.1 602 QMLATLAQLHQRGVIHRDAAPRNMLYDDRTgRYMVIDLEMSKPINEEVPQA 652
                  66667889******************9854489999999999995443332 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.66   2.4e+03      23      63 ..     491     531 ..     481     549 .. 0.69
   2 ?   11.1   0.0   6.2e-05      0.22     168     204 ..     590     626 ..     566     630 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.66
        FTA2  23 diefleyL.gkglhsiVlkvkirgkeYALKlFrfleaeelee 63 
                  ++  + +  +g  ++++kv+   + Y L   + + + ++++
  CCE28269.1 491 AYDHCKPInASGHIGHLFKVRLSPHGYTLV-AKAVAPLDWRP 531
                 5555666644577899*****999999986.66666666664 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.2e-05
        FTA2 168 keqeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 k   ++  s ++++l  l +lh+ g+++rD  ++n++
  CCE28269.1 590 KALPKFDDSAVSQMLATLAQLHQRGVIHRDAAPRNML 626
                 566789999**********************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4919.76
//
Query:       CCE28270.1  [L=676]
Description: related to inorganic phosphate permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-25   88.0  22.9    1.1e-14   54.1   6.6    2.1  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
        0.3   10.9   5.2      0.049   13.5   0.6    2.0  2  DUF3611   Protein of unknown function (DUF3611)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   8.3   2.6e-14   2.3e-10      10     187 ..     126     322 ..     118     349 .. 0.80
   2 !   54.1   6.6   1.3e-18   1.1e-14     271     452 .]     376     563 ..     366     563 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 2.6e-14
                 HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.SS-TGGGG CS
    Sugar_tr  10 llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.nsvevliv 107
                  l+gY ++ ig    l k++  ++++k++  +   + ++  ++ + ++G ++G++f+g +gd++GR+++l+  a++++ig ++  a+ g   + +v++ 
  CCE28270.1 126 GLEGYVLFSIGNLEPLFKKVWPECWDKHQV-CS--KNWIASVTYLEIIGIMVGQVFVGVIGDWVGRRWGLIQDAIIMFIGLLMLTASWGLtLQGWVICY 221
                 589*************************97.54..3577777778899**************************************9988755566665 PP

                 G..HHHHHHHHHHHHHHHHHHHHTTS..........-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.............TTHHHHHHHCCHHHH CS
    Sugar_tr 108 g..RvlvGigvGlasvlvPmyisEiA..........pkklRgalvslyqlaitfGilvaaifglglnktsn.............adgwrillglqlvpa 181
                 +   ++  +gvG+++ ++ +   E+A             +Rg+ v++  l+  +G++v +++  +l  + n             +  +r+ +++ ++  
  CCE28270.1 222 AwsLFFYSLGVGGEYPITATSSLENAstagklstreDRLHRGRRVTMAFLMQGWGQFVNQVMLIVLLIIFNkgtgappystsaaQYAFRLSFAFPAIG- 319
                 555999********************77777776666669********************99888855555477788888443333344444444443. PP

                 HHHHHH CS
    Sugar_tr 182 llllil 187
                     ++
  CCE28270.1 320 ---TLW 322
                 ...333 PP

  == domain 2  score: 54.1 bits;  conditional E-value: 1.3e-18
                 HHHHHHTTTHHHHSS-THH......HHHHHHHHHHHHHHHHHHH....HHHHH..S-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHH CS
    Sugar_tr 271 naimyysptifenlglsks......llvtiivgvvnfvatfvai....flvdr..fGRRtllllGaagmaicfvilgivalllvakskaasivaivfia 357
                 n +++y+ ++f+   ++        l++t     vn+++++++     +l+d    GR+ +  +G+++++++fvi +   + + ++      ++ ++++
  CCE28270.1 376 NDVFFYGNKLFQGQFIKVIsndpgsLMTTWTWNLVNITVSLAGYylasMLIDNklYGRKMMQQVGFFMCFLMFVIPA-FRYKYYTSP-EGIRAFQAMYF 472
                 66777777777643332212225775555555566666665554122277775448********************9.444444443.23344555666 PP

                 HHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 358 lfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 l  ++ ++g+++v ++++ E+fp+ +R++a  +++++     +l ++l+ +i+++ +    f+v   + +++++ +++ +p t g++l+e+e+ +
  CCE28270.1 473 LSSFFNQFGPNSVTFLIAGEVFPTPIRASAHGFSACLGKAGALLAAVLYNYIDDQTK----FYVVPWFGLAGMFLTWLYLPDTTGLDLKEQERRW 563
                 6666668**************************************************....8888888999999*****************9987 PP

>> DUF3611  Protein of unknown function (DUF3611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3      0.48   4.3e+03     100     123 ..     189     212 ..     189     218 .. 0.84
   2 ?   13.5   0.6   5.4e-06     0.049       6      89 ..     265     346 ..     261     368 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.48
     DUF3611 100 klGlivnlvGmllallgaeatvgv 123
                 ++Gli + + m++ ll + a+ g+
  CCE28270.1 189 RWGLIQDAIIMFIGLLMLTASWGL 212
                 579999999999999999998886 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.4e-06
     DUF3611   6 riakalrllgwigFWlQlvLgvvsalillfallgrslae..etnaglgfglflavlglvvllfsifwafrytrlarrLraenpelr 89 
                 r+  a+ + gw  F  Q++L     ++l+++  g+++    ++ a+  f l +a+ ++ +l +  + ++++ + +++L++++++++
  CCE28270.1 265 RVTMAFLMQGWGQFVNQVMLI----VLLIIFNKGTGAPPysTSAAQYAFRLSFAFPAIGTLWLVYYRTWKMPNASKQLAQAKSRTN 346
                 566677778888888888773....3444444444432244788889*******************************66655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4707.37
//
Query:       CCE28271.1  [L=1910]
Description: related to RIM15-protein kinase involved in expression of meiotic genes [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-60  202.6   0.0    5.5e-38  130.8   0.0    2.5  2  Pkinase        Protein kinase domain
    9.6e-27   93.9   0.0      1e-19   70.9   0.0    2.3  2  Pkinase_Tyr    Protein tyrosine kinase
    2.1e-15   56.8   0.0    4.3e-15   55.9   0.0    1.6  1  Response_reg   Response regulator receiver domain
    5.7e-07   29.1   0.0    0.00091   18.6   0.0    2.8  3  Kinase-like    Kinase-like
    0.00012   22.1   0.0    0.00032   20.7   0.0    1.7  1  PAS            PAS fold
     0.0037   17.2   0.1      0.048   13.6   0.2    2.6  2  APH            Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.014   14.3   0.3      0.028   13.3   0.3    1.3  1  Haspin_kinase  Haspin like kinase domain
       0.03   14.5   0.0      0.092   13.0   0.0    1.8  1  PAS_9          PAS domain
      0.031   13.3   0.0      0.051   12.6   0.0    1.2  1  Seadorna_VP7   Seadornavirus VP7
      0.034   13.5   0.0      0.085   12.2   0.0    1.6  2  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
      0.049   13.9   0.0       0.15   12.3   0.0    1.8  1  PAS_4          PAS fold


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.0   3.4e-41   5.5e-38       2     170 ..     698     868 ..     697     879 .. 0.88
   2 !   69.1   0.0   2.3e-22   3.7e-19     152     264 .]    1013    1127 ..    1007    1127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 3.4e-41
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 e ++ + +G+fG+Vy  ++k+tg+ +A+K++kk ++  k++  +v +E +i+     ++++ +ly +f++kd+lylv+ey++gg+ a+l++  g l+ee
  CCE28271.1 698 EIIKPISKGAFGCVYLSKKKATGEYFAIKVLKKADMVAKNQvGNVKTERAIMMWQGeSEFVAKLYWTFSSKDYLYLVMEYLNGGDCASLIKVLGGLPEE 796
                 6788999*****************************9999999*******9987777**********************************9999**** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEE..SSSSCSBCTTTSCGGGS-HHHHT CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlake..lessskltsfvgtseYlAPEvlk 170
                  akk++ +++ g+e+lH++ +iHrDlKp+N+Lid+kg+lK+tDFGl++   + +++++ +  gt    AP +lk
  CCE28271.1 797 WAKKYLGEVILGVEHLHNRDVIHRDLKPDNLLIDQKGHLKLTDFGLSRMglIGRQKRYLNSDGTD--AAPDLLK 868
                 ***********************************************962134444455555554..4666665 PP

  == domain 2  score: 69.1 bits;  conditional E-value: 2.3e-22
                  CSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SS CS
     Pkinase  152 skltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkd 248 
                  ++ + fvgt++YlAPE +++ + ++++D+Ws+G+il+e+l+g ppf++ + ++ + ++l +     +    +  + ++ + +s+eakdl++kll+ d
  CCE28271.1 1013 ETSRRFVGTPDYLAPETINGDKQDETSDWWSIGCILFEFLYGVPPFHAGDVEQIFDNILAR-----R---IQWPDEAHCEPVSSEAKDLINKLLCTD 1101
                  55789******************************************66666655555544.....2...223345566666*************** PP

                  GCCSTT..........HHHHHTSGGG CS
     Pkinase  249 pkkRlt..........aeellqhpyl 264 
                   k+Rl+           ee+ +hp++
  CCE28271.1 1102 VKDRLGsnkgekfssgGEEIRNHPWF 1127
                  *****988888888888888888887 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   6.3e-23     1e-19       2     153 ..     698     846 ..     697     866 .. 0.86
   2 !   20.6   0.0   1.4e-07   0.00023     170     249 ..    1023    1105 ..    1012    1109 .. 0.81

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 6.3e-23
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSS..HHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeat..eeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkke 96 
                  e+ k + +GafG V+  + k     + +  a+K+lk+  +  +++  ++ +e +im+   + + + kl+   ++++ l++v+ey++gGd  + ++   
   CCE28271.1 698 EIIKPISKGAFGCVYLSKKK----ATGEYFAIKVLKKADMvaKNQVGNVKTERAIMMWQgESEFVAKLYWTFSSKDYLYLVMEYLNGGDCASLIKVL- 790
                  578899*********99988....88889999999765441144566788898888877699******************************99997. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi 153
                     l  ++  ++  +v  G+e+L++++++Hrdl   N L++++ + k++DfGL+r  
   CCE28271.1 791 -GGLPEEWAKKYLGEVILGVEHLHNRDVIHRDLKPDNLLIDQKGHLKLTDFGLSRMG 846
                  .99***************************************************974 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.4e-07
                   GGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSB...HHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr  170 kWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevlekl.kegkrlekpekcp...eelyelmkkcweedpeeR 249 
                    ++apE+++  k  + sD Ws G +l+E +  g  p++  + e++++++  ++ + +  ++c+   +e ++l++k + +d ++R
   CCE28271.1 1023 DYLAPETINGDKQDETSDWWSIGCILFEFLY-GVPPFHAGDVEQIFDNIlARRIQWPDEAHCEpvsSEAKDLINKLLCTDVKDR 1105
                   799*************************987.********99999999878888888888885111466666666666666655 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   2.6e-18   4.3e-15       1     111 [.    1500    1609 ..    1500    1610 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 2.6e-18
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH.HHHHESEEEEESSCSSSEHHHHHHHHHHCT...TTSEEEEEESSTSHHHHHHHHH CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealell.keekvdlillDinmpgmdGlellkeireed...pelpviiltahseeedavealk 91  
                    vli++D+p+ r+++++lle+  + ++ ++++g+ea++++  e ++d+i+l  ++p+++G +++++ire++   +++p++++ta+ +e +a +++ 
    CCE28271.1 1500 VLICEDHPVSRMVMEKLLEKLRC-RTISVSNGSEAVRYAmSEIQFDVIFLEYKLPQISGADVARMIRETKnanSHTPIVAITAYLKELQAPHYF- 1592
                    8**********************.8889*********9945567**********************999888899*******999977777766. PP

                    CTESEEEESSG-HHHHHHHH CS
  Response_reg   92 agaddflsKpfdpeeLlkal 111 
                       d  + Kp++ ++L++ l
    CCE28271.1 1593 ---DSLIEKPISSSKLTEVL 1609
                    ...56888999888888765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0021       3.5      18      78 ..     701     760 ..     693     767 .. 0.84
   2 !   18.6   0.0   5.6e-07   0.00091     143     191 ..     796     842 ..     792     862 .. 0.88
   3 ?   -1.9   0.0      0.97   1.6e+03     261     288 .]    1077    1105 ..    1038    1105 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0021
  Kinase-like  18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelairllrgknpeqAk 78 
                  +++ kg ++ v++ k ++tge++a+kv    +  +k+++ ++k +  ai   +g+++  Ak
   CCE28271.1 701 KPISKGAFGCVYLSKKKATGEYFAIKVLKKADMVAKNQVGNVKTER-AIMMWQGESEFVAK 760
                  6899************************************999876.44444667766666 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 5.6e-07
  Kinase-like 143 tiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaL 191
                  + a+++l  ++i  + +L+++ ++h ++++dnll d+kg l+l++f+ L
   CCE28271.1 796 EWAKKYL-GEVILGVEHLHNRDVIHRDLKPDNLLIDQKGHLKLTDFG-L 842
                  5688888.6799999*******************************6.4 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.97
  Kinase-like  261 w.kfklckkipekvkaLlkkfLqlsqedR 288 
                   w +  +c++++ + k L++k+L  +++dR
   CCE28271.1 1077 WpDEAHCEPVSSEAKDLINKLLCTDVKDR 1105
                   256679****************9999998 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     2e-07   0.00032       2      76 ..      15      89 ..      14     120 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2e-07
                HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCC CS
         PAS  2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrage 76
                +lr+  es+ ++i+ ++ dg + +v++++++  G++ +++ gk+++dli+ e   ++++ +    ++ ++s  ++
  CCE28271.1 15 ELREAAESTLNAIVDLNLDGTVKWVSPSWQDVVGIPVDDMRGKPISDLIVSENKTIFNDMVVSMKKDDSKSYRVR 89
                78889999999***************************************9977777777766666666555555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.48   7.8e+02      37      84 ..     742     785 ..     701     815 .. 0.83
   2 !   13.6   0.2     3e-05     0.048     167     200 ..     816     847 ..     788     849 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH  37 irrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84 
                 +  e a++ +  ++++ v+++++       + +l++++ey+ g + + 
  CCE28271.1 742 VKTERAIMMWQGESEF-VAKLYW---TFSSKDYLYLVMEYLNGGDCAS 785
                 5678999999999999.99****...777777899******9988765 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3e-05
                 EEE-SS-SGGGEEEC..TTEEEEE---TT-EEEE CS
         APH 167 vllHgDlhpgNllvdpddgrvtGviDfedaglgp 200
                  ++H+Dl+p+Nll+d ++g++  + Df+++++g 
  CCE28271.1 816 DVIHRDLKPDNLLID-QKGHL-KLTDFGLSRMGL 847
                 589************.66776.699999999985 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   1.7e-05     0.028     230     257 ..     819     846 ..     811     858 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.7e-05
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsRle 257
                    HRdL+ dn L+d++++  l d+ lsR+ 
     CCE28271.1 819 HRDLKPDNLLIDQKGHLKLTDFGLSRMG 846
                    **************************86 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.6e-05     0.092       7      60 ..      30      82 ..      24     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.6e-05
       PAS_9  7 dnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk.k 60
                 n dg++ ++++++ ++ G   +++ gk+i+dl+   +e++  +++++ +++k  
  CCE28271.1 30 LNLDGTVKWVSPSWQDVVGIPVDDMRGKPISDLI--VSENKTIFNDMVVSMKKdD 82
                679**888**************************..7888777777777777552 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.1e-05     0.051     157     200 ..     810     857 ..     802     884 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.1e-05
  Seadorna_VP7 157 fhsestnllhGDcnpenlmcDknGylklvDPv....sLlertvvyvni 200
                    h  +  ++h D +p+nl+ D+ G lkl D +     L+ r+  y n 
    CCE28271.1 810 EHLHNRDVIHRDLKPDNLLIDQKGHLKLTDFGlsrmGLIGRQKRYLNS 857
                   4666999**********************9652222466666666665 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       5.4   8.8e+03      20      46 ..     449     475 ..     439     483 .. 0.75
   2 ?   12.2   0.0   5.2e-05     0.085     115     171 ..     793     845 ..     772     857 .. 0.77

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 5.4
         Kdo  20 twfvvaekvnaalrkyyrggllgklsk 46 
                   ++++++ + ++ +++rg+   +++k
  CCE28271.1 449 SESSEKGEADVDMNELHRGRSEDHVTK 475
                 455666667889999999999999987 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.2e-05
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarl 171
                 l+ee  ++ l +v   ++ lh+++v H+dl + n+l++q++    ++ l D+  +r 
  CCE28271.1 793 LPEEWAKKYLGEVILGVEHLHNRDVIHRDLKPDNLLIDQKG----HLKLTDFGLSRM 845
                 67777888888899999***********************9....888989876665 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.4e-05      0.15      10      47 ..      29      66 ..      21      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.4e-05
       PAS_4 10 vldpdgrvlyaNaaaaelfgappeellGktlaellpee 47
                 l+ dg+v ++++++++++g+p ++++Gk+  +l   e
  CCE28271.1 29 DLNLDGTVKWVSPSWQDVVGIPVDDMRGKPISDLIVSE 66
                4699****************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1910 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.03u 0.30s 00:00:01.33 Elapsed: 00:00:00.48
# Mc/sec: 12085.30
//
Query:       CCE28272.1  [L=306]
Description: uncharacterized protein CPUR_01746 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-15   54.8   0.0    9.8e-15   54.4   0.0    1.2  1  Acyltransferase  Acyltransferase
      2e-09   37.4   0.7    4.4e-09   36.3   0.1    1.8  2  Acyltransf_C     Acyltransferase C-terminus


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   1.1e-18   9.8e-15       1     134 [.      71     229 ..      71     230 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1.1e-18
  Acyltransferase   1 kvrvtglenlpekgpailvaNHqsylDvlllwlllyksn.gprnvviiakkellsipllgflmrllgfifidRksnaraagslenise.lleeg 92 
                      +++v+g + lp+++ ai+vaNH  + D+ ++++l+++ + + + ++  ak +l+ +p+lg++++++g+  ++R +  ++++ l+++ + +++ g
       CCE28272.1  71 HIEVSG-DPLPKGESAIVVANHVAWCDFYMIQALAQRAGmL-KYCRYFAKSQLKAVPFLGWGLWAMGMPLVSR-NWLKDKAELDRVFSgIVKGG 161
                      6899**.**************************99888866.*******************************.88888999999999555555 PP

  Acyltransferase  93 ..klvviFPEGtrsre..................gel.lpfkkGlvrlaakak.....kgvpivPvai 134
                         ++v + E tr+                     +l +p  kG+v  +++++     k v+++++a+
       CCE28272.1 162 ypTWLVSYSEATRFTPkkfeesqiwckksdkqqpKNLlFPRTKGFVTTVQHLRktphvKAVYDLTIAY 229
                      6567999************************9975557***************9************98 PP

>> Acyltransf_C  Acyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         1   9.4e+03      23      35 ..     177     189 ..     173     190 .. 0.75
   2 !   36.3   0.1   4.9e-13   4.4e-09       6      46 ..     254     294 ..     250     297 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1
  Acyltransf_C  23 PedeeelaeWlhe 35 
                   P++ ee + W+++
    CCE28272.1 177 PKKFEESQIWCKK 189
                   6665688889976 PP

  == domain 2  score: 36.3 bits;  conditional E-value: 4.9e-13
  Acyltransf_C   6 kpsevhiyvrripleevPedeeelaeWlhelfeeKDkllee 46 
                    +++ h++ rr+pl+++P+++e+la+Wl+e++ eK + le+
    CCE28272.1 254 SKFKFHVHARRFPLKSLPDSDEDLARWLEERWIEKGEWLES 294
                   57899******************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2229.92
//
Query:       CCE28273.1  [L=334]
Description: related to AP-1-like transcription factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-06   28.7   7.9    1.8e-06   28.0   7.9    1.3  1  bZIP_1    bZIP transcription factor
  ------ inclusion threshold ------
       0.17   12.2   1.5       0.27   11.5   1.5    1.2  1  DUF5082   Domain of unknown function (DUF5082)
        0.2   11.8   5.9        0.4   10.8   5.9    1.6  1  bZIP_2    Basic region leucine zipper
       0.62   10.6   5.7        1.2    9.7   5.7    1.3  1  bZIP_Maf  bZIP Maf transcription factor


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   7.9   3.9e-10   1.8e-06       7      61 ..      68     122 ..      66     125 .. 0.96

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3.9e-10
                 XXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   7 ekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevekLks 61 
                 ++r + NR a+r  R+RK+ +i++Le +v  L++  ++ ++  e+l++e++ Lk+
  CCE28273.1  68 TRRQELNRQAQRTHRERKEHYIKALEGEVLRLKELFSNVSQSKERLADENKHLKT 122
                 79***************************************************97 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.5   6.1e-05      0.27      12      57 ..      82     127 ..      68     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.1e-05
     DUF5082  12 iaelrseiaaleekIerLkeaktklsdekeslkqkkkklekplnss 57 
                  + +++ i+ale  + rLke  + +s+ ke+l +++k l++ l+++
  CCE28273.1  82 RERKEHYIKALEGEVLRLKELFSNVSQSKERLADENKHLKTLLAHH 127
                 4567889*********************************999886 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   5.9     9e-05       0.4       5      40 ..      66     102 ..      62     122 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9e-05
                 XXXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   5 yrerRr.kNreAarrsRekkkakeeeleervkeLeee 40 
                 +  rR   Nr+A r+ Re+k ++ + le +v +L+e 
  CCE28273.1  66 ALTRRQeLNRQAQRTHRERKEHYIKALEGEVLRLKEL 102
                 5679999***************************986 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.7   0.00026       1.2      32      85 ..      68     121 ..      67     126 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00026
    bZIP_Maf  32 rRRrlKNrgyakscrkrrlqqkeelekekeeleeelerlqqelsrlrqekdalk 85 
                 +RR   Nr ++++ r+r+ +  + le e  +l+e +++  q  +rl  e+  lk
  CCE28273.1  68 TRRQELNRQAQRTHRERKEHYIKALEGEVLRLKELFSNVSQSKERLADENKHLK 121
                 69*********************************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      684  (0.0381505); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2540.30
//
Query:       CCE28274.1  [L=580]
Description: probable eukaryotic translation initiation factor 3 subunit 7 homolog [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.8e-206  685.5   0.0   7.1e-206  685.2   0.0    1.0  1  eIF-3_zeta  Eukaryotic translation initiation factor 3 subuni


Domain annotation for each model (and alignments):
>> eIF-3_zeta  Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  685.2   0.0    4e-210  7.1e-206      11     520 .]      18     554 ..      10     554 .. 0.90

  Alignments for each domain:
  == domain 1  score: 685.2 bits;  conditional E-value: 4e-210
                 XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXX....XXXX....XX.XXXXXXXXXXXXXXXXXXXXXXX..XX.XXX........ CS
  eIF-3_zeta  11 dgWGPseelpeefkdipyapfsksdklgkvaDwtse.akekrekr....raek....ygagsasafayqheedessFslVdnkkakkkkkeak...... 94 
                 dgWGPs +++++++ +pyapfsk+dklg++aDwtse ++++r ++    ++ +    yga+ a++f+   +edessFs+V+n+++++k++  +      
  CCE28274.1  18 DGWGPSVTTETTLNGVPYAPFSKGDKLGRMADWTSEgKDRDRGRNqynrNY-RdqqaYGASLAATFSAPPAEDESSFSIVSNTRDSTKSRYGRgavftr 115
                 79****998888************************544444444454312.13345***999********************9999777764578666 PP

                 ...XXXXXXXXXXX.XXXXXXXXXX............................XXXXXXXXXX-----TT-EEEEEEEHHHHHT--TT----EEEEEEE CS
  eIF-3_zeta  95 ...rqrrgrgeekkerqqqqalnkkqgeee.keerskkkkkkkkgrrkgwkdkkdkeqrnreasvevkpeWkvleeidfsrLsklslevkepedlesyG 189
                     qr+grg+++ +r++q + +   +++   ++ ++ ++  ++grr+gwkd+ dk++rnr+asv++k++W++leeidf+rL+kl+le++e+edl+ yG
  CCE28274.1 116 ggrGQRGGRGDSRGGRGGQFQRTGGPRQGGgYDRGGRPNAGPRGGRRFGWKDY-DKPTRNRDASVNIKADWELLEEIDFNRLAKLNLETDEGEDLADYG 213
                 544333555555555655444444444443044444444456699999****9.********************************************* PP

                 EE-BB-GGGGG-BTT.B-EE------B-----GGG-HHHHHHTT.TS-SEEEEHHHHHHHHTGGG--S-EEEEEEEETTEEEEE--TTSCTTS--SSTT CS
  eIF-3_zeta 190 kleyYdksydrittk.nekpLqkldrvfynvttsdDpviqelakekkatvfaTDailslLmcatrSvysWdivvtkkgnklfldkrdgseidlltVnEt 287
                 +l+yYd+s+d+  +k +ek+L+ +dr++ynvtts+Dp+iqela++++at+faTD+ils+Lmc++rSvy+Wdiv++++gnk+fldkrd++++d++tVnE+
  CCE28274.1 214 FLYYYDRSFDKQPVKgSEKKLTAIDRAAYNVTTSSDPIIQELAEKDEATIFATDSILSMLMCSPRSVYPWDIVIVRQGNKIFLDKRDNANLDMVTVNEN 312
                 ************976489********************************************************************************* PP

                 SSS--....-S-TTSTTSHHHHHHHHHHHHHHHHHHTBET.TS--EE-SB--TTS-GGGCC.CB-SEEEEEEEEE-STT....-EEEEEEEESEEEE-T CS
  eIF-3_zeta 288 aadppl...edeedsiNspssLslEAtlinqnfsqqvlkeseeekvkfeepnpFvseeeeteelasvaYrYrkfdLsde.eekielvvRtevdavlkgk 382
                 aad+pl   +  ++ +N ps+L+ EAt+in+nf++qv+ ese++kv+++++npF++++e+t++ as+aY+Yr+fdLs++ e+++ l+vRtevdav kg 
  CCE28274.1 313 AADAPLdaaDGGKEGVNMPSALAEEATYINHNFANQVVSESETSKVDMSNANPFYNASEDTDPAASKAYKYRRFDLSTNdEDPMYLIVRTEVDAVQKGV 411
                 ******99888899***************************999**********************************99******************* PP

                 TS..EEEEEEEEEEES-HHHHT-..-.-HHHHTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHT-SEEEEEEEEEEETTEEEEEEEEEEEEE-HHHHHHH CS
  eIF-3_zeta 383 ekeqkqfvtikaLnEfdskaqga..a.dWrskLdsqrGAvlatElknNscklakWtvqalLagadqlKlGyvsRanpkdaskHviLgvqsykpkdlaaq 478
                 +++++q vti+aLnEfdskaqg+  a dWrskL +qrGAv+atE+knNsckla+Wtvq++L+++d +KlG+vsR+np+ ++kHviLgv  +kp+d+a+q
  CCE28274.1 412 SGSEDQHVTIRALNEFDSKAQGSggAlDWRSKLVTQRGAVVATEMKNNSCKLARWTVQSILSKSDIMKLGFVSRVNPRLNDKHVILGVIGWKPRDFANQ 510
                 **999*****************99967************************************************************************ PP

                 TT--HHHHHHHHHHHHHHHHTS-S..EEEEEEE-TTSSEEEEEE CS
  eIF-3_zeta 479 inlnldNaWgivrtivdlvmkqpd..gkYvllKdpnkpvirlYs 520
                 +nl+l+N+Wgivrti+d+++++++  gk+vl+Kdpnk+++rlY+
  CCE28274.1 511 MNLSLSNGWGIVRTIADMCLNREEeeGKFVLVKDPNKSILRLYE 554
                 *******************9876555*****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4271.96
//
Query:       CCE28275.1  [L=177]
Description: uncharacterized protein CPUR_01749 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      135  (0.0075297); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1298.88
//
Query:       CCE28276.1  [L=95]
Description: uncharacterized protein CPUR_01750 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.64   10.7   4.8        0.7   10.5   4.8    1.2  1  Pex14_N   Peroxisomal membrane anchor protein (Pex14p) conser
        1.5    9.2  67.2         26    5.3  51.0    4.3  2  CYSTM     Cysteine-rich TM module stress tolerance
          7    6.0   8.9         10    5.5   8.9    1.2  1  MafB      Neisseria toxin MafB


Domain annotation for each model (and alignments):
>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.8   0.00012       0.7      76     125 ..      14      54 ..       1      78 [. 0.50

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
     Pex14_N  76 tpqpqaasqtsqsspspsppaqqqqqqyrpPivtypefltkppkppppPl 125
                  pq++++s+   + ++p    + q q+y pP++++p +++++p     P+
  CCE28276.1  14 YPQHPQQSYGPPQGQYP----PPQGQYYGPPQGQQPMQYQQAP-----PQ 54 
                 23333333332222222....2223344677777775554433.....33 PP

>> CYSTM  Cysteine-rich TM module stress tolerance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  51.0    0.0043        26       2      42 .]      43      84 ..       4      84 .. 0.87
   2 ?   -8.0  11.0         3   1.8e+04      28      37 ..      84      93 ..      82      95 .] 0.43

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0043
       CYSTM  2 pqpgYyqqppvqe.qppqkgdgGclagClaALcCCclcdecf 42
                +qp+ yqq p+q  ++++ g++ cl +ClaA+cCCc ++e +
  CCE28276.1 43 QQPMQYQQAPPQDtRGKKGGSNNCLIACLAAICCCCAVEEGC 84
                67888888766655666666777*****************99 PP

  == domain 2  score: -8.0 bits;  conditional E-value: 3
       CYSTM 28 ClaALcCCcl 37
                C  ++ CC +
  CCE28276.1 84 CECCIDCCEC 93
                4344444433 PP

>> MafB  Neisseria toxin MafB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.9    0.0017        10      99     127 ..       7      34 ..       3      37 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0017
        MafB  99 yrlhweGsehhPadgydGPqGGgyPkPkG 127
                 y+ ++ G+ +hP+ +y  Pq G+yP+P+G
  CCE28276.1   7 YQGQQGGYPQHPQQSYGPPQ-GQYPPPQG 34 
                 888899**********6666.79****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 713.34
//
Query:       CCE28277.1  [L=730]
Description: related to ABP1-actin-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-28   98.3   4.8    4.1e-15   55.4   0.6    2.5  2  SH3_9        Variant SH3 domain
    3.3e-27   93.8   3.5    3.3e-14   52.2   0.3    2.4  2  SH3_1        SH3 domain
    3.3e-16   59.2   0.0    5.9e-16   58.4   0.0    1.4  1  Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
    6.2e-14   51.4   0.0    4.3e-06   26.3   0.0    2.6  2  SH3_2        Variant SH3 domain


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.3   2.4e-15   1.1e-11       1      49 []     591     640 ..     591     640 .. 0.98
   2 !   55.4   0.6   9.1e-19   4.1e-15       1      49 []     679     727 ..     679     727 .. 0.99

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 2.4e-15
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsl.tGrtGlvPanyve 49 
                 +ly+ye  e  e+ L +G+++++i++ +++W+ g++  G+tGl+P+nyve
  CCE28277.1 591 VLYDYEKAEGNEIDLVEGQYVINIDMVDEDWWMGTNhLGETGLFPSNYVE 640
                 89**********************************9************7 PP

  == domain 2  score: 55.4 bits;  conditional E-value: 9.1e-19
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsltGrtGlvPanyve 49 
                 Aly+ye+ ed eLs++++ +it++e ++++W++g ++G+ Gl+P+nyv+
  CCE28277.1 679 ALYDYEAAEDNELSFPEDATITNLEFPDEDWWFGHYDGQVGLFPSNYVQ 727
                 8***********************************************7 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.2   9.5e-15   4.3e-11       1      48 []     590     636 ..     590     636 .. 0.97
   2 !   52.2   0.3   7.3e-18   3.3e-14       1      48 []     678     723 ..     678     723 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 9.5e-15
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 ++lYDYe+ e +E+++ +G  +i++++++++Ww g ++  g++Gl+Ps
  CCE28277.1 590 VVLYDYEKAEGNEIDLVEGQYVINIDMVDEDWWMGTNHL-GETGLFPS 636
                 68************************************9.6******8 PP

  == domain 2  score: 52.2 bits;  conditional E-value: 7.3e-18
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 +AlYDYea e++ELsf ++ +i++le  +++Ww+g ++  g++Gl+Ps
  CCE28277.1 678 TALYDYEAAEDNELSFPEDATITNLEFPDEDWWFGHYD--GQVGLFPS 723
                 59************************************..69*****8 PP

>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   1.3e-19   5.9e-16      26     121 .]      12     105 ..       4     105 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 1.3e-19
                  TEEEEEESS-.HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHHHHHHHHHHHHCTTSEEEEEE-CGGCCSHHHHHHH CS
  Cofilin_ADF  26 eeivveeege.tyeelreelpeseprYavydveyehddeskrsklvfIswvPdsapikqkmlyasskdalkkelkgisveieatdldelteeelkek 121
                    ++ve++g+ ++++l+e+++e+++++a+++v+   d ++ ++k v+I+w++ ++p ++k  + s+ +a+ k l+g++v+i a++ ++l++e++++k
   CCE28277.1  12 SILKVESTGDgELADLIEDFNEGRIQFAFVKVK---DLNTALPKNVLIAWCGGGVPERTKGYFTSHTAAVAKVLHGYHVQITARSDSDLEPETIMQK 105
                  4578888888999*******************9...44578*****************************************************987 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   1.6e-08   7.3e-05       3      57 .]     590     642 ..     589     642 .. 0.86
   2 !   26.3   0.0   9.6e-10   4.3e-06       5      55 ..     680     727 ..     677     729 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.6e-08
                 EESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE.CCCEEEEEGCGEEEE CS
       SH3_2   3 raiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev.gGrvGlfPsslveeq 57 
                 +++ dy+ +  +e+ + +G+ +  +   +  +++ww g++  G  GlfPs++ve++
  CCE28277.1 590 VVLYDYEKAEGNEIDLVEGQYVINI---DMVDEDWWMGTNhLGETGLFPSNYVEVV 642
                 78889999999*********44444...78888*******66***********985 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 9.6e-10
                 SS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEECCCEEEEEGCGEE CS
       SH3_2   5 iedyvgedkseLsfkkGdvikvlslgskdsdgwwegevgGrvGlfPsslve 55 
                 + dy+++  +eLsf ++ +i  l   +  +++ww+g ++G+vGlfPs++v+
  CCE28277.1 680 LYDYEAAEDNELSFPEDATITNL---EFPDEDWWFGHYDGQVGLFPSNYVQ 727
                 5699******************9...55566*******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5015.52
//
Query:       CCE28278.1  [L=258]
Description: probable glutaredoxin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-18   67.3   0.3    3.5e-17   62.4   0.0    2.9  3  Glutaredoxin    Glutaredoxin
    2.1e-13   50.2   0.0    5.8e-13   48.7   0.0    1.8  1  Thioredoxin     Thioredoxin
  ------ inclusion threshold ------
      0.021   14.9   0.0          2    8.5   0.0    2.6  2  Disulph_isomer  Disulphide isomerase
        0.1   12.9   0.0        2.7    8.4   0.0    2.6  2  Thioredoxin_8   Thioredoxin-like
       0.14   12.3   0.0       0.19   11.8   0.0    1.2  1  Eapp_C          E2F-associated phosphoprotein


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.26   9.2e+02      31      53 ..      63      85 ..      28      93 .. 0.74
   2 ?    0.2   0.4      0.25   8.8e+02      27      45 ..     138     155 ..     133     160 .. 0.81
   3 !   62.4   0.0   9.6e-21   3.5e-17       1      60 []     164     228 ..     164     228 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.26
                  GCCSHHHHHHHHHHHTSSSSSEE CS
  Glutaredoxin 31 vdkdeeireelkelsgvrtvPqv 53
                  v+ d+e+  ++ e+ +v +vP +
    CCE28278.1 63 VSVDAEEMSDVSEIYDVTAVPFL 85
                  55556777888888899999855 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.25
                   EEEEGCCSHHHHHHHHHHH CS
  Glutaredoxin  27 eeidvdkdeeireelkels 45 
                   ee dvd+d + +eel +++
    CCE28278.1 138 EEADVDED-QKKEELYKRL 155
                   6789***9.8888887775 PP

  == domain 3  score: 62.4 bits;  conditional E-value: 9.6e-21
                   EEEEES.....TSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin   1 vvlftk.....ptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfidgkhv 60 
                   v+lf+k     p+C+++++++++L+e+ vk+ ++++++d+e+r+ lke+++++t Pq++ dg++v
    CCE28278.1 164 VMLFMKgtpssPQCGFSRQMVAILREQSVKYGFFNILADDEVRQGLKEYADWPTYPQLWMDGELV 228
                   899***********************************************************987 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.6e-16   5.8e-13       4      93 ..       7     102 ..       4     115 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.6e-16
                  ESSHHHHHHHHTT..TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT....TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-H CS
  Thioredoxin   4 vltkenFeeevak..ekklvlveFyApwCghCkalaPeleklaeelkd....kvklakvdvdenedlakkyevegiPtlklfkngkevkkyegare 93 
                  +++ +++ee++a+  +++l++v F Apw ++C +++ +l +la+e+ +      k + vd++e +d+ + y+v+++P l l++ng+  ++++g++ 
   CCE28278.1   7 ITSRAQWEETLAAlsPSTLLIVSFHAPWAAPCAQMSTVLSALASEYPAteplGTKWVSVDAEEMSDVSEIYDVTAVPFLALVRNGHVLETVSGSSA 102
                  5677899999998878999****************************9999999********************************9999999754 PP

>> Disulph_isomer  Disulphide isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00056         2      18     112 ..       4      98 ..       1     116 [. 0.81
   2 ?    3.6   0.0     0.018        65       1      33 [.     179     211 ..     179     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00056
                     -EE--SHHHHHHHHHH--SEEEEEEE-SSHHHHHTHHHHHHHH.HHH-.S--SEEEEEETTTSHHHHHHHHHTSTTS---SSEEEEEETTEEEEE CS
  Disulph_isomer  18 feelktaeevdealkkeegttlvvvNSvCGCaagaaRpavkla.leke.kkpdklvtvFagqdkeatakareylegyppsSPsiallkdgelvhl 110
                     ++e+++  + +e+l++ + +tl++v      aa  a ++ +l+ l++e    + l t + ++d e ++ + e+      + P +al+++g++++ 
      CCE28278.1   4 ITEITSRAQWEETLAALSPSTLLIVSFHAPWAAPCAQMSTVLSaLASEyPATEPLGTKWVSVDAEEMSDVSEIYD--VTAVPFLALVRNGHVLET 96 
                     67889999999999999999*****99999****9999866650555545557799**************99874..5678**********9987 PP

                     E- CS
  Disulph_isomer 111 ie 112
                     + 
      CCE28278.1  97 VS 98 
                     75 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.018
                     HHHHHCHHHHHHHHTTT-EE--SHHHHHHHHHH CS
  Disulph_isomer   1 ypeelvkpmreelteaGfeelktaeevdealkk 33 
                     +++++v+ +re+ ++ Gf ++ + +ev + lk+
      CCE28278.1 179 FSRQMVAILREQSVKYGFFNILADDEVRQGLKE 211
                     6789************************99986 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00075       2.7       3      35 ..      25      59 ..      23      73 .. 0.78
   2 ?    2.2   0.0     0.062   2.2e+02      63      92 ..      64      91 ..      59      94 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00075
                   EEEEEE--SSSHHHHHHHHHHHHHHHHHHH..TTS CS
  Thioredoxin_8  3 vvlLyfgaswcppckaftpklkelyeklkk..kkk 35
                   ++++ f+a w +pc+++   l++l +++ +  + +
     CCE28278.1 25 LLIVSFHAPWAAPCAQMSTVLSALASEYPAtePLG 59
                   67899******************999998644444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.062
                   E.EE-TT-HHHHTT-S--TT-SEEEEE-TT CS
  Thioredoxin_8 63 svpfddkkrnklkkkynvkaiPtlvvldkn 92
                   s  +d ++ + + + y+v+a+P l ++++ 
     CCE28278.1 64 S--VDAEEMSDVSEIYDVTAVPFLALVRNG 91
                   3..555677889999*********999865 PP

>> Eapp_C  E2F-associated phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.3e-05      0.19      87     148 ..     124     201 ..      96     202 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.3e-05
      Eapp_C  87 kkkkskkkeekeeeaeaeeaeeeeeeeeee....................eesyhpvkCseCstevavldkd.evyhFfnvla 148
                  +k+s + e++e+++ea+ +e+++     +                    + +  + +C   ++ va+l ++   y Ffn+la
  CCE28278.1 124 ISKSSPSAEADEDDEEADVDEDQK-----KeelykrlgdlvqaapvmlfmKGTPSSPQCGFSRQMVAILREQsVKYGFFNILA 201
                 222222222222222222222222.....12345578999999******99999999************999677*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1822.10
//
Query:       CCE28279.1  [L=806]
Description: probable dynamin-related GTPase DNM1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     6e-110  366.9   0.0   1.2e-109  366.0   0.0    1.5  2  Dynamin_M  Dynamin central region
    4.2e-55  186.3   0.0    8.2e-55  185.4   0.0    1.5  1  Dynamin_N  Dynamin family
    1.5e-31  108.4   1.6      4e-31  107.0   1.6    1.8  1  GED        Dynamin GTPase effector domain
    3.4e-05   23.9   0.4    0.00062   19.8   0.4    2.4  1  MMR_HSR1   50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.0   0.0  2.7e-113  1.2e-109       1     284 [.     236     522 ..     236     523 .. 0.97
   2 ?   -3.5   0.0       1.1   4.7e+03     109     132 ..     718     746 ..     703     796 .. 0.52

  Alignments for each domain:
  == domain 1  score: 366.0 bits;  conditional E-value: 2.7e-113
   Dynamin_M   1 vvdilenkvipLklGYvgVvnRsqkdInkkksieealkkEkaFFeshpayrkladkaGtpyLakkLnqiLvehIrkslPelkkkineklqklekeleel 99 
                 ++dil+++v+pLklG++gVvnRsq+dI+++k++e+al++E +FF++hpayr++++++Gt++Lak+Ln++L++hIr+ lP++k+++n+++ ++++el+++
  CCE28279.1 236 ALDILSGRVYPLKLGFIGVVNRSQQDIQGNKPMEDALQAEMDFFKHHPAYRNISTRCGTHFLAKTLNTTLMTHIRERLPDIKARLNTLMGQTQQELASY 334
                 68************************************************************************************************* PP

   Dynamin_M 100 geskpsde.ektklllqlitkfkedfkklieGe.sevstkelsggarireiFnetlekslekidpleelsdeeirtairnsrGrelplfvpekaFealv 196
                 g+   s + ++++l+lq +t f+++f ++i+G+ se+stkel+ggari++iFn+++++sle+idp+++ls ++irtairns+G++++lfvpe+aF+ lv
  CCE28279.1 335 GDMHFSGKeHRGSLILQQMTRFATSFIASIDGTsSEISTKELCGGARIYYIFNSVFGSSLETIDPTSNLSADDIRTAIRNSTGPRPSLFVPEMAFDLLV 433
                 *55444445************************55599************************************************************* PP

   Dynamin_M 197 kkqikkleepalkcvelVyeelekiveklek.elkrFpnLreeikevvedllreqeeptkemienliemelayintnhpdfigalkair 284
                 k+qik le p+++cvelVyeel+ki++++ + el+r+p+L++++ e v+dllre++ p+ +++e+li++++ayintnhp+f+ga++a++
  CCE28279.1 434 KPQIKLLEIPSHRCVELVYEELIKICHTCGStELSRYPRLQAKLIETVSDLLRERLGPASSYVESLISIQRAYINTNHPNFLGAAAAMS 522
                 ****************************9999*****************************************************9997 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.1
   Dynamin_M 109 ktklllqlitkfkedfkklieGe.....s 132
                 +t+l+  li+++ + ++++i ++      
  CCE28279.1 718 ETELIRALISSYFNIVRESIADQvpkaiM 746
                 45555566666666666666555443221 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.4   0.0   1.8e-58   8.2e-55       1     167 [.      33     226 ..      33     227 .. 0.93

  Alignments for each domain:
  == domain 1  score: 185.4 bits;  conditional E-value: 1.8e-58
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C.............CS...SSEEEE....T-EB--CHHHHHHHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas.............eravkeelkek....ekkledfsevreeieketekiaga 82 
                 i+vvGsqS+GKSSvl++++g+d+lprg++++Trrpl+lql + +e+              ++ ++ e+ e+    +++++dfs+v++eie+et+++ag+
  CCE28279.1  33 IVVVGSQSAGKSSVLENIVGRDFLPRGSGIVTRRPLILQLINVPEEDgasdaisdphrpaSAGRRSEWAEFhhipNRRFTDFSDVKREIENETARVAGN 131
                 89**************************************5555544455555666666677888999999999************************* PP

                 SSS--SS-EEEEEEETTS-SEEEEE---B-SSSGTTS.........HHHHHHH.STTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N  83 nkgiskkvillkilsllvkgltlvDlPGldsvnkrdq.........elvkeyi.kkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                 nkgi++++i+lki+s +v +ltlvDlPGl++v+ +dq          l+ eyi k++++ilav++an+d+ nseal+lar+vd  g+rti+vltk
  CCE28279.1 132 NKGINRQPINLKIYSSHVLNLTLVDLPGLTKVPIGDQpsdiekqtrTLISEYIaKPNSLILAVSPANVDIVNSEALKLARHVDALGRRTIGVLTK 226
                 **********************************************************************************************9 PP

>> GED  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   1.6     9e-35     4e-31       1      92 []     714     805 ..     714     805 .. 0.98

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 9e-35
                 XXXXXTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCCCHHHCCTTSGGGHHHHT---SCHCCCCHHHHHHHHHHHHHCCCCCHH CS
         GED   1 reeseveeirslvksYfnivrktiadqiPkaimhllvneakeslqkellakLykkedldeLLkEdeeiaekRkelkkrlealkkAreilsev 92 
                 re++e+e ir l++sYfnivr++iadq+Pkaimhllvn++k+ +q++l+++Lyk++ ++eLL Ed+ ++++Rk+++  l+++++A +i+ ev
  CCE28279.1 714 REAMETELIRALISSYFNIVRESIADQVPKAIMHLLVNHSKDVVQNRLVSELYKEDLFEELLYEDDGVKKERKKCETLLQTYREAAKIIGEV 805
                 5899*************************************************************************************986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.4   1.4e-07   0.00062       1     100 [.      32     209 ..      32     226 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.4e-07
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE..ETTEE.................................................. CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk..lkgke.................................................. 47 
                 ++++vG   +GKS+++  ++g+         +Tr +   ++       e                                                  
  CCE28279.1  32 QIVVVGSQSAGKSSVLENIVGRDFLPRGSGIVTRRPLILQLInvP---Eedgasdaisdphrpasagrrsewaefhhipnrrftdfsdvkreienetar 127
                 589*******************99999999******777665231...1345668888899999999999***************************** PP

                 ........................EEEEECGGC...........SSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHH CS
    MMR_HSR1  48 ........................ielvDtpGl...........iegaseekglgkaflaleeadlillvvdaseeklkpldeeleel 100
                                         ++lvD+pGl           i  +++ + l  ++ a+   +lil v  a+   ++ +++e  +l
  CCE28279.1 128 vagnnkginrqpinlkiysshvlnLTLVDLPGLtkvpigdqpsdI--EKQTRTLISEYIAKP-NSLILAVSPAN---VDIVNSEALKL 209
                 ********************************8444422222111..233335555555433.36666666544...33333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 5228.86
//
Query:       CCE28280.1  [L=105]
Description: related to Cytochrome c oxidase assembly protein COX19 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0023   18.0   0.1     0.0044   17.1   0.1    1.5  1  CHCH      CHCH domain
  ------ inclusion threshold ------
      0.014   15.7   3.0       0.09   13.1   3.1    1.9  1  Pet191_N  Cytochrome c oxidase assembly protein PET191
       0.12   12.7   3.6        2.6    8.5   0.4    2.2  2  COX17     Cytochrome C oxidase copper chaperone (COX17)


Domain annotation for each model (and alignments):
>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   7.4e-07    0.0044       1      34 [.      31      65 ..      31      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.4e-07
                THHHHHHHHHHHHHCTS.STTTTHHHHHHHHHHHC CS
        CHCH  1 CgeefkeylkClkdnsd.efskCrkefeafkeCvk 34
                C+  ++ yl C+k+    ++++Cr+  +a+ +C++
  CCE28280.1 31 CKHVMTTYLACIKKVRGlNDDECRNIAKAYLSCRM 65
                9999*************99***************9 PP

>> Pet191_N  Cytochrome c oxidase assembly protein PET191
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.1   1.5e-05      0.09      25      56 ..      35      66 ..      27      77 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
    Pet191_N 25 rktpkeClkekaeelpeeCkqlrkayfeCkrg 56
                  t   C+k+     ++eC+++ kay +C+++
  CCE28280.1 35 MTTYLACIKKVRGLNDDECRNIAKAYLSCRMD 66
                467889****988999**************87 PP

>> COX17  Cytochrome C oxidase copper chaperone (COX17)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.4   0.00043       2.6      27      43 ..      28      44 ..      22      47 .. 0.84
   2 ?    5.3   0.2    0.0042        25      26      40 ..      49      63 ..      45      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00043
       COX17 27 eekCkelieahkaCmrs 43
                e +Ck+++  + aC+++
  CCE28280.1 28 EGECKHVMTTYLACIKK 44
                349***********997 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0042
       COX17 26 eeekCkelieahkaC 40
                ++++C+++ +a+ +C
  CCE28280.1 49 NDDECRNIAKAYLSC 63
                6679*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 820.01
//
Query:       CCE28281.1  [L=100]
Description: related to ubiquitin-like protein modifier [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-19   69.5   0.1    1.9e-19   69.2   0.1    1.1  1  Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
    5.7e-09   35.6   0.1      7e-09   35.3   0.1    1.1  1  ubiquitin  Ubiquitin family
  ------ inclusion threshold ------
       0.14   12.6   0.1       0.18   12.2   0.1    1.2  1  SRP9-21    Signal recognition particle 9 kDa protein (SRP9)


Domain annotation for each model (and alignments):
>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.1   3.2e-23   1.9e-19       5      70 ..      25      90 ..      22      92 .. 0.91

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 3.2e-23
                EEESSS-.-EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEE CS
   Rad60-SLD  5 lkgkdgk.evkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidv 70
                +k  d++ +v++k+k++t+++kL++a+++++g    ++vr++FDG + +p++t+  l++ dgdt++v
  CCE28281.1 25 IKVTDNNnDVYFKIKRSTKLEKLMNAFCERQGKVI-TSVRFLFDGSRVQPTDTPDALEMADGDTLEV 90
                444555559**************************.******************************9 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   1.2e-12     7e-09       2      71 ..      24      94 ..      23      95 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.2e-12
                EEEE.TTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESS CS
   ubiquitin  2 tvkt.ldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrl 71
                ++k+ ++++++ +++++s+++e+l+++ +e++g    + r++++G + +   t+  + ++dg+tl+++ ++
  CCE28281.1 24 NIKVtDNNNDVYFKIKRSTKLEKLMNAFCERQGKVITSVRFLFDGSRVQPTDTPDALEMADGDTLEVHQEQ 94
                6788688999*********************************************************9876 PP

>> SRP9-21  Signal recognition particle 9 kDa protein (SRP9)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1     3e-05      0.18      45      91 ..       8      52 ..       1      58 [. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3e-05
     SRP9-21 45 ksekkaskaspprgtltlKtydpvsGvclkYkTnkaaevsRlisalg 91
                 + +++++a +++++l +K++d++    + +k +++ ++++l++a  
  CCE28281.1  8 ATPEERTEAPASSEHLNIKVTDNN--NDVYFKIKRSTKLEKLMNAFC 52
                23333444447899**********..677788899999***997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 772.35
//
Query:       CCE28282.1  [L=804]
Description: related to hydrogen peroxide-inducible protein hic-5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-24   85.6  24.3    1.9e-08   34.4   6.8    3.6  3  LIM          LIM domain
  ------ inclusion threshold ------
      0.039   13.6   0.4      0.039   13.6   0.4    3.2  3  DUF2321      Uncharacterized protein conserved in bacteria (D


Domain annotation for each model (and alignments):
>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   1.6   7.1e-11   6.3e-07       1      40 [.     582     621 ..     582     627 .. 0.95
   2 !   34.4   6.8   2.1e-12   1.9e-08       1      56 [.     678     732 ..     678     734 .. 0.95
   3 !   32.1   1.3   1.1e-11     1e-07       1      45 [.     741     783 ..     741     800 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 7.1e-11
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT. CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegs 40 
                 C++C+ +i+ r + l+ l +++H++CF C  C+++L+ ++
  CCE28282.1 582 CHECGFPIEGRFVSLAGLQERFHPQCFSCYCCGTSLEAME 621
                 ************************************9875 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 2.1e-12
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT..CEEETTEEEEHHHHHH CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegs.fyekdgklyCkkdylk 56 
                 C+ C+ +i+ +++v  al+++wH  +F C++C++++++g  ++ekdg   C k+  k
  CCE28282.1 678 CKHCKTPIIGEHIV--ALGDHWHYGHFFCAECGDPFEHGMtHIEKDGYAWCIKCQTK 732
                 **************..************************99*********999765 PP

  == domain 3  score: 32.1 bits;  conditional E-value: 1.1e-11
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT.CEEET CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegsfyekd 45 
                 C+ C+  ++ ++ v +al+  wHe+CF+C+dC+  +++g+++ k+
  CCE28282.1 741 CKMCKMAVIGEY-V-QALGGEWHERCFRCADCGGGFEDGQIFPKE 783
                 9********555.5.5*********************99976655 PP

>> DUF2321  Uncharacterized protein conserved in bacteria (DUF2321)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   1.0     0.019   1.7e+02      38      74 ..     580     615 ..     569     621 .. 0.80
   2 ?   13.6   0.4   4.4e-06     0.039      27      83 ..     664     718 ..     652     721 .. 0.71
   3 ?   -1.6   3.3       0.2   1.8e+03      27      74 ..     724     772 ..     717     776 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.019
     DUF2321  38 tkcpkCsteirGkyyvegvislgkeyevpsy.CkkCgk 74 
                 t+c +C+ +i+G+ +v  +++l+++++   + C  Cg+
  CCE28282.1 580 TTCHECGFPIEGR-FV-SLAGLQERFHPQCFsCYCCGT 615
                 78**********9.44.446888888888776777886 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 4.4e-06
     DUF2321  27 eyCekcGekti.tkcpkCsteirGkyyvegvislgkeyev.psyCkkCgkpyPWtkakl 83 
                  yC+    ++   +c++C+t+i G+     ++ lg++++    +C +Cg+p+    +++
  CCE28282.1 664 FYCHLDWHELFaPRCKHCKTPIIGE----HIVALGDHWHYgHFFCAECGDPFEHGMTHI 718
                 56665444443158**********9....567899876651568********8776666 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.2
     DUF2321  27 eyCekcGektit....kcpkCsteirGkyyvegvislgkeyevpsy.CkkCgk 74 
                 ++C kc  k  +    kc+ C++ + G+ yv+    lg e++   + C  Cg 
  CCE28282.1 724 AWCIKCQTKRTErrapKCKMCKMAVIGE-YVQA---LGGEWHERCFrCADCGG 772
                 5677776554322222799999999999.5655...67666665555777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5573.41
//
Query:       CCE28283.1  [L=921]
Description: related to nuclear pore protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   8.8e-187  622.5   0.0     1e-186  622.3   0.0    1.0  1  Nup84_Nup100  Nuclear pore protein 84 / 107


Domain annotation for each model (and alignments):
>> Nup84_Nup100  Nuclear pore protein 84 / 107
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  622.3   0.0  5.7e-191    1e-186       1     730 []     106     886 ..     106     886 .. 0.90

  Alignments for each domain:
  == domain 1  score: 622.3 bits;  conditional E-value: 5.7e-191
                   HHHHHHHHHHHHHHHHHHHHHHSS-.TTT......---SSTTS-HHHHHHHHHHH-HHHHHHHHHHHHHHHT-------SS--S............. CS
  Nup84_Nup100   1 lenlelEaktWdLlerLysdrlssa.sekseeeeellelhpyssekelveellkkdselrelqivldWLeenakepeeeegeddele..a.r....a 89 
                   +++le+E++tWdL++rL+++r+s +   +  + +  l+  + +s ++ v ++l+++s + e+ +vl+WL+++a+  ++ ++ + el+  a r    a
    CCE28283.1 106 IRQLEKEVQTWDLFRRLLPLRYSGSgP-EPMRFSSPLPG-SRKSIQDDVHDFLETNSVALERRAVLQWLQTTAAAGPDIDEVARELQqnAdRgdiiA 200
                   589*******************85532.22333333333.456668999************************44444444443442465568999* PP

                   STTHHHHHC.SSHS..............................HHSTTHHHHSGGGS-HHHHHHHHHHHHHHHHHHHTT-.HHHHHHHHHHTT-HH CS
  Nup84_Nup100  90 hkwenTlesikqkkrlr...........gvaassskekeeqlVtelDpDaplRqgrkLdpkDeederallkaifellRaGk.leeaielCketgqlw 174
                   h+w++T+++ik +k+++           +  +s+ +++ ++lVt+lDpDa +RqgrkL+p+D+++era++ ++fe+lR+G+ +e+++e+C+e++++w
    CCE28283.1 201 HGWLHTRTKIKLRKSVTawprlldrqspNEISSHVNSDGAPLVTQLDPDASMRQGRKLEPQDDYFERAIWLGCFEHLRRGSkFEDIREWCRERTEMW 297
                   **************************976565689999*********************************************************** PP

                   HHHHHHTTSB-B-TTTSGGGTT-SS-BSBTTHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTS---H.HHT-SHHHHHHHHHHHHHHHHHHHHHHH.. CS
  Nup84_Nup100 175 raaiLeGlklyhdpnideeldekeevegnksralWkrtcyklsknknldeyeraiyglLsGdlesvlkvcksWedhLwaylnalleeqveqelrelv 271
                   ra+++++++ ++++  d++    +++ +  s alW+r+c++l++++++d++era+yg+LsGd+++v++v+ksW+d+L+a++nall++q+++++ + +
    CCE28283.1 298 RAISMSAMPMSVEEWHDGP----KTDADAASLALWRRMCFSLARQGGSDDFERAVYGILSGDITTVENVAKSWDDFLFANYNALLRSQIDTFMLSKC 390
                   **********999877775....899*********************************************************************86 PP

                   ..........TTSS-GGG--S-------HHHHHHHHHHH.....SHHHHHSCCHHHHHHHHCS-HHHHHHHHHHTTHH--................. CS
  Nup84_Nup100 272 kkkseseelpeeklsseelvlalpkpasseeilnllssl.snervreeaeeplriiqaaiIlddvdsllesladalskaa................. 350
                    ++    ++  ++l+++++v ++++++  +  ++++++  s+++vr+ea+ep +++qa+ I+ ++d++l++++ +++ aa                 
    CCE28283.1 391 PPDV--VSTLLQSLPAFDAVEFHGDDN--DVQKRIIQTIgSHPQVRTEASEPNKALQASFIARELDRHLYEQGLVITAAAnefstsrlvrkgleede 483
                   6665..8889999***********997..6666666666677***********************************999***************** PP

                   ..---------TTSHHHHHHHHHHHHHHHHH............ST.TSS-HHHHHHHHHHHHHHHHHTT-GGGHHHHHTTGGGGGG-XXXXXXXXXX CS
  Nup84_Nup100 351 ..kkdesenelleepdllRflaHlilflrllgk.........sepeskeeeeakeniitaYislLreagkyeliplYvsfLpeeravevyskfLesi 436
                       +++++++l +++ lR++aH+ ++++ll++         + +  ++++  +eni++aY ++Lr+a+++eliplY+s  +++r +e++s++ ++ 
    CCE28283.1 484 ntIVSKYKYFDLAQHSGLRIVAHVFVLVSLLDRferqesdslEPQIPASWRFFQENILAAYTDYLRRAKLRELIPLYCSVFNTPRRYEALSWNVIEQ 580
                   9977899**************************99999887635678899999******************************************** PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................XXXXX................XXXXXXXXXXXXXXXXXX CS
  Nup84_Nup100 437 tdkeeRekqLklakklgldveailkrtvervieeteseyeps................eeidiekee.......elsedesevteeDlklirsleWl 510
                   +d + R +qL l++++g+d ++++++++   + e +++ +                  +               +++ +e++v+++D ++ir+leWl
    CCE28283.1 581 SDLDVRGEQLGLIRRAGIDDSRFVESQATLFFGELDNNPKLAvnnasfrilepgppssR-------GqrrmkndFFGAEEDKVDPKDINMIRALEWL 670
                   ****************************9999999995444488777777777776441.......033344569********************** PP

                   .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.................XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXX CS
  Nup84_Nup100 511 lfedelyeealeqsnalirrFLlngklaaakelfkrlnpkdlikeydl............eeledelees..kdeleeeteeaareyleyealieal 593
                   l++++ ++++++ ++ +++ FL ng+l+aa++l++r+ +  ++++++             e+++ +l++s   + ++e+++++ar+y+e+eal++al
    CCE28283.1 671 LMVEKSWPQVFSIGIQVYKLFLRNGRLSAARRLYRRVAFTRIMQHMTGhddpeitlyedvEFWTLQLQDSglGNVKPEQAMSDARNYMELEALVKAL 767
                   ************************************************7777777777777777777777**99*********************** PP

                   XXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXX.X...XXXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS
  Nup84_Nup100 594 daleewkkllsnskpkkkkqyeseklkewkqklkelvkqakeliknvLkfgWLvdltekeeeeerkeeleelRqlyiPelileLhsvlvsartlls. 689
                   d+le+++      +p       + ++k+++q++ e++++a+++++++Lk +WL++ +e     + ++el++lR +y+Pe+il+++s+l++a+t +s 
    CCE28283.1 768 DTLETIA------SP-------DLTNKQFWQRVGEEITTATDNMQPLLK-NWLLPGIE-----NGDHELKQLRDAYLPETILAYISALHFAGTGISr 845
                   ******7......35.......55689**********************.********.....6789****************************** PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Nup84_Nup100 690 enlkealeLanvVAdeesklyevFsksgrlkellqklaesS 730
                   ++l e+++La+v+A+++s+l  +F+++gr+kel+++l ++S
    CCE28283.1 846 DHLLECMDLASVIAERNSDLSGTFVDAGRMKELVEALTACS 886
                   *************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 6234.12
//
Query:       CCE28284.1  [L=260]
Description: uncharacterized protein CPUR_01758 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-31  109.2   0.0    2.1e-31  109.0   0.0    1.0  1  Mod_r     Modifier of rudimentary (Mod(r)) protein


Domain annotation for each model (and alignments):
>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.0   1.2e-35   2.1e-31       3     145 ..      85     247 ..      83     248 .. 0.96

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 1.2e-35
       Mod_r   3 lSkeeLqelledeeklealvk...tl.pevkqlkeekeellaeneslaeknlslepeleelrselqekleelkelekefeekeqeldellqkfspdall 97 
                 + +++L +ll+++ +l+al++   ++ +++ + ++ ++++l  n +lae+  s  ++l ++rs +q++l ++++le+++++k++++d++l +f p+al+
  CCE28284.1  85 KGTQDLAALLSSPTLLHALAHapsSAhESTLSSHKTLTSCLHHNSHLAEQLTSAATHLSHQRSATQAALLSTHALERQWRQKQADMDHALGPFAPAALY 183
                 6799*****************99855467*********************9999********************************************* PP

       Mod_r  98 arLqtavaeaeeeSealaeefle................geieldeFvkefkekRklyHlrkeK 145
                 +rL + v+e+   +eal+e+fl+                 e+el e+v++++e+R l +lr+e+
  CCE28284.1 184 QRLGQGVQEQGAVCEALEESFLDggggagravgemeaggEEKELGEWVRRYREARVLWYLRRER 247
                 **********************99**************666*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2003.56
//
Query:       CCE28285.1  [L=373]
Description: uncharacterized protein CPUR_01759 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2724.66
//
Query:       CCE28286.1  [L=530]
Description: probable F-box protein involved in pathogenicity [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-07   28.9   0.3    1.8e-06   27.6   0.3    1.7  1  F-box       F-box domain
    2.5e-06   27.3   3.1    3.5e-06   26.8   0.4    2.4  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.3   2.1e-10   1.8e-06       3      34 ..     111     142 ..     110     146 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 2.1e-10
                 HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHH CS
       F-box   3 lsrLPsevlrhILerLplsdllalrrVSkgwr 34 
                 ++ LP e+  +IL++Lpl+d+l+lr+ Sk+w+
  CCE28286.1 111 FLALPTELQVQILSSLPLTDILSLRLASKTWH 142
                 678****************************8 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.4   3.9e-10   3.5e-06       2      35 ..     112     145 ..     111     158 .. 0.92
   2 ?   -0.2   0.1      0.11   9.7e+02      38      46 ..     183     190 ..     178     192 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.9e-10
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrva 35 
                 + LP+E+ +qI+s Lp++d+l+l+l ++ W+ v+
  CCE28286.1 112 LALPTELQVQILSSLPLTDILSLRLASKTWHLVI 145
                 68*****************************998 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.11
  F-box-like  38 tplLWrrlv 46 
                 + +LW+rl 
  CCE28286.1 183 C-SLWHRLH 190
                 4.7999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3638.29
//
Query:       CCE28287.1  [L=659]
Description: uncharacterized protein CPUR_01762 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2715  (0.151431); expected 358.6 (0.02)
Passed bias filter:                      747  (0.0416643); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.48
# Mc/sec: 4103.71
//
Query:       CCE28288.1  [L=393]
Description: probable H+-ATPase V1 subunit c, vacuolar [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.3e-114  381.8   0.0   4.9e-114  381.6   0.0    1.0  1  V-ATPase_C  V-ATPase subunit C


Domain annotation for each model (and alignments):
>> V-ATPase_C  V-ATPase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.6   0.0  2.7e-118  4.9e-114       1     369 [.       5     385 ..       5     386 .. 0.93

  Alignments for each domain:
  == domain 1  score: 381.6 bits;  conditional E-value: 2.7e-118
  V-ATPase_C   1 ywLisvpg....ektseqtleelnkalskkskn.selykfeipdlkvgtLDsLvalsddLgKldafvesvvkKvartlaevledqkdkleenllvngks 94 
                 y ++s+p+    ++++++++++++ a+s    +  +++ f++pd+k+gtLD+Lv+++ddL+Kl+a++++vv+Kv + l+++l++++++l+ +++vn+k+
  CCE28288.1   5 YAVVSLPLsaleSSDKDDAVSSISAAISP---DiGSVSPFNVPDFKIGTLDALVEQADDLAKLEATCQAVVAKVGESLKSILNNDEERLAAYKMVNDKP 100
                 66788888777688889999999999985...449**************************************************************** PP

  V-ATPase_C  95 lesYltkFqWdeakypvkqslkelvdiiskevtqidedlktksaaYnelksslqalerkktgnLltrsLadlvkkedfvldseyLttllViVpknseke 193
                 +++Yl++F+W++ +y+ ++sl el+d+++ke+ ++d+d+ktk++++n++ks+l+al+r++tgnL+t+sL+ +++++ +++dse+++t+l++Vp ns+ke
  CCE28288.1 101 TDQYLRNFSWNKIRYRSDKSLGELIDVLQKELINVDNDVKTKFSQHNTIKSNLAALQRRQTGNLATKSLTPIIDPKLLIQDSEFIETHLIAVPTNSKKE 199
                 *************************************************************************************************** PP

  V-ATPase_C 194 wlksYekltdmVVPrSakklaeDneyaLftVtlfkkvveefkakarekkfivReFsydeeeleeekeeltkleaekkkqegelvrllkvnFsevfvawi 292
                 +lksYe+l+ mVVPrS+ ++++D+e++Lf+V  fkk+  ef++k+re+k+++R++   +   eee++el+++++e++k  ge +r+ ++ +se++++w+
  CCE28288.1 200 FLKSYETLAPMVVPRSSVEVQHDDEFTLFAVATFKKHSAEFIHKCREQKWTPRQYAHVQGGREEEQRELDRATNEERKVCGEALRIGRTGWSESVMVWL 298
                 *************************************************************************************************** PP

  V-ATPase_C 293 HlkalrvFvEsvLRYGlpvnFqalllqpekkkekklreeLnklfahldss....akkgkvkkdd...sldiagl...slgqqeyfpY 369
                 H+ +lrvFvE+vLRYGlp  +++ ++++++k + k++++L+++++ l+++    +k+g+v+kdd   s ++a+      + +ey+ Y
  CCE28288.1 299 HVLTLRVFVEAVLRYGLPLGYATAIIKTTPKLAPKVKTALDSSYSFLGGNafgrDKRGRVTKDDaamSSEMAAAgfgPGEGHEYTAY 385
                 **********************7777888*********************8888777777777766634444441222233446666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2752.77
//
Query:       CCE28289.1  [L=211]
Description: probable MET14-ATP adenosine-5`-phosphosulfate 3`-phosphotransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-70  235.1   0.0    4.2e-70  234.7   0.0    1.2  1  APS_kinase  Adenylylsulphate kinase
    1.9e-05   24.9   0.0    3.4e-05   24.0   0.0    1.5  1  AAA_33      AAA domain
    6.7e-05   23.5   0.0    0.00011   22.8   0.0    1.4  1  AAA_18      AAA domain
    0.00056   19.4   0.0    0.00089   18.8   0.0    1.2  1  KTI12       Chromatin associated protein KTI12
     0.0027   18.1   0.0     0.0034   17.8   0.0    1.2  1  AAA_16      AAA ATPase domain
     0.0069   15.7   0.0      0.014   14.7   0.0    1.6  2  Zeta_toxin  Zeta toxin
  ------ inclusion threshold ------
      0.037   13.8   0.0      0.067   13.0   0.0    1.4  1  AAA_29      P-loop containing region of AAA domain
      0.053   12.4   0.0      0.062   12.2   0.0    1.1  1  DUF463      YcjX-like family, DUF463
      0.074   12.2   0.0        0.1   11.8   0.0    1.3  1  G-alpha     G-protein alpha subunit
       0.14   11.9   0.0       0.23   11.2   0.0    1.5  1  PRK         Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.7   0.0   2.4e-73   4.2e-70       1     157 [.      23     190 ..      23     191 .. 0.97

  Alignments for each domain:
  == domain 1  score: 234.7 bits;  conditional E-value: 2.4e-73
                 S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHHHHHHHHHHCH CS
  APS_kinase   1 rgvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfseedRkenirrvaevaklladaglivlvafisPyreeReaarelleea 99 
                 rg+++wltGls+sGKst+a+ale++L + g+++y+LdGdnvR+gLnkdLgfse+dR+enirr+aevakl+ad+++i++++fisPyr++R++arel++ +
  CCE28289.1  23 RGLTIWLTGLSASGKSTVATALEQHLLHLGRAAYRLDGDNVRFGLNKDLGFSEKDRNENIRRIAEVAKLFADSSTITIASFISPYRADRDMARELHAAS 121
                 689*********************************************************************************************977 PP

                 ...........TEEEEEEEE--HHHHHHHTTTSHHHHHHTTSSSSHTTTSS-----SS-SEEEETTTS- CS
  APS_kinase 100 ...........lkfievfvdtplevceerDpkglYkkareGeikeftGidspYeaPenpelvvdtdkes 157
                            + f+evfv++p++v+e+rDpkglYkkar+Gei +ftGi+ pYe+P npe+v++td++s
  CCE28289.1 122 sdpknagdddaIPFVEVFVKIPIAVAEQRDPKGLYKKARRGEIDNFTGITGPYEEPLNPEIVIKTDESS 190
                 7888889988899****************************************************9875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.9e-08   3.4e-05       2      81 ..      27     105 ..      27     163 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.9e-08
      AAA_33   2 vllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnls 81 
                 ++l Gl++sGKst+a+ l ++l      a++l+ d++r+ l ++   s++d+++   r+     e+a  +l a  ++i+ a ++s
  CCE28289.1  27 IWLTGLSASGKSTVATALEQHLLhlgraAYRLDGDNVRFGLNKDLGFSEKDRNENIRRIA----EVA--KLFADSSTITIASFIS 105
                 5789***********99977766677****************988888876555444433....444..2334444444444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   6.1e-08   0.00011       1      44 [.      27      79 ..      27     119 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 6.1e-08
      AAA_18  1 IlltGtpGvGKttlakeLskrl.gf........gvnlrdvakenglllevdpe 44
                I+ltG +++GK+t+a +L+++l ++        g+n+r+ + ++    e d +
  CCE28289.1 27 IWLTGLSASGKSTVATALEQHLlHLgraayrldGDNVRFGLNKDLGFSEKDRN 79
                99*******************85557777777777776665554433333333 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     5e-07   0.00089       4      63 ..      27      87 ..      26     108 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5e-07
                EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH.TTSS.S--GGGHHHHHHHHHHH CS
       KTI12  4 vvltGlPssGKstrakeLakaleeekrsvvviddeslgiekds.ykdsakekalRsslrsa 63
                + ltGl +sGKst+a  L+++l + +r+ + +d + +++  ++    s+k ++   + +++
  CCE28289.1 27 IWLTGLSASGKSTVATALEQHLLHLGRAAYRLDGDNVRFGLNKdLGFSEKDRNENIRRIAE 87
                569******************************9999954333355555544444444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.9e-06    0.0034      18      66 ..      18      68 ..      12     155 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.9e-06
      AAA_16 18 rvrsgrpelvllsGesGvGKsslvrellralekdg.gif.lrgkcdqlesa 66
                ++r++r+  + l+G s++GKs+++++l ++l   g + + l g++++++ +
  CCE28289.1 18 QLRRQRGLTIWLTGLSASGKSTVATALEQHLLHLGrAAYrLDGDNVRFGLN 68
                56788899*******************997776642333477777777333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.9e-06     0.014      10      55 ..      18      64 ..       9      95 .. 0.86
   2 ?   -3.8   0.0       3.6   6.5e+03      50      74 ..     110     134 ..     108     141 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.9e-06
  Zeta_toxin 10 ypsqerPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlR 55
                  +++r   i l G +++GKs++a++l++ l   ++ + rld+D++R
  CCE28289.1 18 QLRRQRGLTIWLTGLSASGKSTVATALEQHLLhLGRAAYRLDGDNVR 64
                4677899999********************9867888899****998 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.6
  Zeta_toxin  50 dpDdlRelhPeyeeilkadpkkase 74 
                 d+D  Relh   ++  +a +++a  
  CCE28289.1 110 DRDMARELHAASSDPKNAGDDDAIP 134
                 6788888887766666666666655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.7e-05     0.067      21      43 ..      22      45 ..       5      56 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.7e-05
      AAA_29 21 lkg.atlltGpsGsGKSTllDAiq 43
                ++g ++ ltG s sGKST+  A+ 
  CCE28289.1 22 QRGlTIWLTGLSASGKSTVATALE 45
                3567889***********987775 PP

>> DUF463  YcjX-like family, DUF463
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.5e-05     0.062       3      29 ..      27      53 ..      25      89 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.5e-05
      DUF463  3 lavTGLsraGKtvfitsLvnqLlaaek 29
                +  TGLs +GK++  t+L ++Ll+  +
  CCE28289.1 27 IWLTGLSASGKSTVATALEQHLLHLGR 53
                558********************8776 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.6e-05       0.1      12      46 ..      13      49 ..       5     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.6e-05
                XXXXXXXXE..EEEEEEEESTTSSHHHHHHHHH..HH CS
     G-alpha 12 kaerkarkkkrevkllllGqseSGKsTilkqlk..ll 46
                ++er++ +++r +++ l G s SGKsT+   l+  ll
  CCE28289.1 13 RHERNQLRRQRGLTIWLTGLSASGKSTVATALEqhLL 49
                5678899999******************988875555 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.23       2      35 ..      27      60 ..      26      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
         PRK  2 IgvagsSGaGkttvarklekifgrekvkaaeieg 35
                I ++g S++Gk+tva +le+ + + +  a   +g
  CCE28289.1 27 IWLTGLSASGKSTVATALEQHLLHLGRAAYRLDG 60
                6689****************99877766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      646  (0.036031); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1474.29
//
Query:       CCE28290.1  [L=322]
Description: uncharacterized protein CPUR_01765 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-11   43.8   0.0    5.6e-11   42.6   0.0    1.7  1  4HBT      Thioesterase superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   3.1e-15   5.6e-11       2      71 ..     222     290 ..     221     296 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 3.1e-15
                 SSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEE CS
        4HBT   2 GvvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevr 71 
                 G+vhgG ++++lDe+++ ++++   +  + v+++l+id+++p   g  l+++a+ +++ ++ a v+ ++ 
  CCE28290.1 222 GIVHGGFLATMLDEGLARCCFGALPH-NIGVTANLNIDYRKPTPAGTFLVLRAETTKVEGRKAWVKARIE 290
                 9*************************.********************************99998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2330.53
//
Query:       CCE28291.1  [L=999]
Description: related to MAK21-protein required for 60S ribosomal subunit biogenesis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-48  165.3   0.7    5.7e-48  163.2   0.7    2.3  1  CBF              CBF/Mak21 family
  ------ inclusion threshold ------
      0.048   13.7   0.3       0.13   12.3   0.0    1.8  2  Cnd1             non-SMC mitotic condensation complex subunit
       0.12   11.6   0.0       0.33   10.1   0.0    1.7  1  CNOT1_TTP_bind   CCR4-NOT transcription complex subunit 1 TTP
       0.15   11.4  58.5        1.1    8.5  24.7    2.3  2  BUD22            BUD22


Domain annotation for each model (and alignments):
>> CBF  CBF/Mak21 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.2   0.7   1.3e-51   5.7e-48       2     170 .]     598     751 ..     597     751 .. 0.91

  Alignments for each domain:
  == domain 1  score: 163.2 bits;  conditional E-value: 1.3e-51
         CBF   2 vqaLvllfqllskqkqsellsasdRFyraLYrkLldpelltsskralllnllykalkadkpvkrvaAFvKRllqlalhappsfalgllallsellkhpp 100
                 +qaL l+++l+ + ++     a+dRFyr+LY++Lldp+l+tssk+al+lnll +alk+d++v+rv+AF+KR+lq++ +++p+f++gll+++ +l ++ p
  CCE28291.1 598 IQALLLIQHLSAA-RNL----ATDRFYRTLYESLLDPRLVTSSKQALYLNLLLRALKSDVDVRRVKAFAKRMLQISNLHQPAFVCGLLYVVAHLRQTFP 691
                 8************.677....78**************************************************************************** PP

         CBF 101 klkalleekfkdvkeeeeeekkeekkkskaesgvYdptkrdpeysnaeasslwElsllakhfhPtValfA 170
                 +l++l+e      + e++  ++   ++ +a+   Yd +kr+pe+sna++s+lwE+ +++ hfhP+V lfA
  CCE28291.1 692 DLSTLVE------TPEASIFDD---ET-SAALPGYDGRKRNPEHSNAQRSCLWEMIPFQAHFHPSVTLFA 751
                 *******......555432222...22.333678*********************************998 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.8e-05      0.13      22      90 ..     368     436 ..     361     486 .. 0.78
   2 ?   -3.6   0.0       2.2     1e+04      82     124 ..     604     645 ..     577     655 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteisekse 90 
                 +++ L++ ++De +y R+ a+  v  L++++  +e+++l  l + l D ++++ + a ++l +++   +
  CCE28291.1 368 IIQLLESWCSDEIEYSRMKAVDFVYGLLKEKPEQESNLLTLLVNKLGDRDRKIASRASYLLLQLQISHP 436
                 677899999***************************************************999876633 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.2
        Cnd1  82 lteiseksenaiynllpdiisklsdalnecsewgqitilefLl 124
                 ++ +s    n++   +  +++  + +   ++  +q   l++Ll
  CCE28291.1 604 IQHLSAAR-NLATDRFYRTLYESLLDPRLVTSSKQALYLNLLL 645
                 33333333.2222222222222222334455555555555555 PP

>> CNOT1_TTP_bind  CCR4-NOT transcription complex subunit 1 TTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   7.3e-05      0.33     100     180 ..     621     700 ..     617     707 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.3e-05
  CNOT1_TTP_bind 100 qLfGsiieeqLvsykalgiaLrivLealrkppgskmfefgikaLeqfksrLkeypqycqhlasiphlkefppeLveyiesg 180
                      L+ s+++ +Lv++ + ++ L+++L al++ ++ + +++  k + q+++ L++    c  l  + hl+++ p+L  ++e+ 
      CCE28291.1 621 TLYESLLDPRLVTSSKQALYLNLLLRALKSDVDVRRVKAFAKRMLQISN-LHQPAFVCGLLYVVAHLRQTFPDLSTLVETP 700
                     6999*****************************9999999999999876.77766667777999****9999999988865 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  25.8   0.00026       1.2     130     290 ..      31     201 ..       2     203 .. 0.40
   2 ?    8.5  24.7   0.00025       1.1     143     273 ..     849     973 ..     825     984 .. 0.39

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00026
       BUD22 130 svkkllgiekkkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsed.......eekeeseddeeeeeededdedaee................. 204
                 ++++ l  ++  k+k+++ ++ +  k+++k+++++e ++++ +++++d++d       +                                        
  CCE28291.1  31 KIDQNLSSRD-HKRKNPPTDAGT--KNEQKRQRQSE-KTEPRKDQEQDDQDallaeikA----------------------Lggdeqdlelingvdsdd 103
                 2222222111.111111111111..11111111111.1222222222222234443221......................022222233333331111 PP

       BUD22 205 .......deedeeaeerelaqydglla..........sddededeyneetdeesseesdssdssesasesesessekkkkkkkkkkkkakakkvt.sst 285
                         ++ ++a +++la++ + l+          +++ +ed   ee d+e+s+ +d+ +++ s+ e+es++++k     kk    + +++ +   +
  CCE28291.1 104 etsvkesTDRIDKALKDDLAALTKELGfstlapevaiESEPEED---EEMDDEESSGDDDISEDGSDAEEESPTETK---RVKKVGDMTFEPRADwHAY 196
                 11122222223333333344443333377777777663333333...577788888888888888888888877666...3334444444445555888 PP

       BUD22 286 fLPsL 290
                 +LP+L
  CCE28291.1 197 KLPQL 201
                 88887 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00025
       BUD22 143 kkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsed.......eekeeseddeeeeeededdedaeedeedeeaeerelaqydgllasddededeyn 234
                  ke++      ++++kkk+++++   +++eee+ed+++       + ++ ++d +ee ++d dd d       e+ ++ +l+   ++ +++deded   
  CCE28291.1 849 GKEPK------AAASKKKQAAAD---QKAEEEEEDEDEvwkalvsSRPDIEDDGSEEGFDDLDDLDMAS----EDGSSPALSLGSDVDDDEDEDEDMGV 934
                 22222......222222222222...1223333333333444433445555555555555555554443....33333333333333225555555222 PP

       BUD22 235 eetdeesseesdssdssesasesesessekkkkkkkkkk 273
                 + +d++++ +sd+  +   +++ e++++ ++k+kkk+++
  CCE28291.1 935 DLDDDDDEMDSDGLVAVGGDDADEEQDEGDEKSKKKSRR 973
                 333333333333333333322222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (999 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1459  (0.0813765); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.47
# Mc/sec: 6455.07
//
Query:       CCE28292.1  [L=447]
Description: related to E.coli prolyl-tRNA synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-21   75.8   0.0    9.8e-21   74.5   0.0    1.7  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    1.7e-10   40.9   0.0    3.4e-10   39.9   0.0    1.4  1  HGTP_anticodon  Anticodon binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   1.1e-24   9.8e-21      43     178 ..      17     330 ..       1     331 [. 0.90

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 1.1e-24
                   EEEEBTTTSTBCTTTB-SEEEEEEEEEEES.GGGHHHHHHHHHHHHHHHHHHTT.SCEEEEEEGTTSCBTTSEEEEEEEEETT.............. CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............. RF
  tRNA-synt_2b  43 qtkyRdEksdsrGLlRvreFhqkdgyvfha.easlddslrdlikaisriferlglefraiielmsaksadykdkkefeavses.............. 124
                   ++kyRdE +  +GLlR reF +kd y+f +  as+ + + ++ ka+  +f +l l+  + + + +  ++ ++ + e  + s +              
    CCE28292.1  17 TRKYRDEMRPRHGLLRSREFVMKDLYSFDKsFASAVSTYDEVAKAYRAFFADLKLPILVAEASSG--DMGGNHSHEYHLPSSIgedtviscdscnyt 111
                   689*****9667******************67***********************9765555544..456888888888877788888888888888 PP

                   ................................................................................................. CS
                   ................................................................................................. RF
  tRNA-synt_2b 125 ................................................................................................. 124
                                                                                                                    
    CCE28292.1 112 andevattrspldsmvpgqsmqeqdtriwhgitkdrrrlvkawypgkgsagktaeinmhavrevitdldpsiddplkawaestsaraestshggiei 208
                   88888888888888888888999999999999999999999999999999999999999999999999999************************** PP

                   ...................................................................TSEEEEEEEEEEEETHHHHHTTEEEECTTS CS
                   ...................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 125 ...................................................................ltkgieigtiqklgtrlserlgatvldenn 154
                                                                                      ++k++e+g+ + lgtr+se l +tv+  n 
    CCE28292.1 209 invvdmrlvdsysemmneisispadkgipirtisqlpgttennaegldllrpmegdgcprcktgqlrVQKALELGHTFYLGTRYSEPLALTVALPNS 305
                   ******************************************************************************************9998888 PP

                   SEEE.EEEEEEEEEHHHHHHHHHHH CS
                   xxxx.xxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 155 reks.vimicaaigveRllsaileq 178
                   +e   v m+c++igv+R+ +a+ e+
    CCE28292.1 306 KEPVpVEMGCYGIGVSRIFGAVAEH 330
                   7765156***************997 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   3.8e-14   3.4e-10       2      92 ..     348     441 ..     347     442 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 3.8e-14
                     EEEEESSSSHHHHHHHHHHHHHHHHTTT...SEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHH CS
  HGTP_anticodon   2 vvviplnekaeeleeyakklaeeLraag...irvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklk 92 
                     +vvip +  ++  +e+++kl  +L a +   i+++ldd++ ++g+k+++ad++g+p++vv+G    +kg+++v+ r    +e++++++l+++l 
      CCE28292.1 348 IVVIPSSGVTDTTLEFYDKLSCQLAASEsraIDTVLDDRKLTFGWKMQDADMIGYPVVVVLGRAWRDKGICEVQCRSLSLKENIPVEDLATYLA 441
                     79999999888899***********9999*************************************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3216.51
//
Query:       CCE28293.1  [L=157]
Description: probable prefoldin subunit 5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-21   76.4   0.8    2.3e-21   75.9   0.8    1.1  1  Prefoldin      Prefoldin subunit
    0.00071   19.5   2.9      0.057   13.4   0.2    2.2  2  Prefoldin_2    Prefoldin subunit
     0.0041   17.5   1.5       0.41   11.1   0.1    2.3  2  DASH_Dad2      DASH complex subunit Dad2
  ------ inclusion threshold ------
      0.024   15.0   4.1        1.2    9.5   0.2    2.2  2  CLZ            C-terminal leucine zipper domain of cyclic nuc
      0.025   13.9   0.0       0.03   13.6   0.0    1.3  1  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
        0.1   13.1   3.2        2.7    8.5   0.1    2.3  2  FadA           Adhesion protein FadA
       0.15   12.0   5.5        3.3    7.7   0.2    2.4  2  Sec2p          GDP/GTP exchange factor Sec2p
       0.17   12.0   1.8        0.9    9.7   0.1    2.3  2  DUF5595        Domain of unknown function (DUF5595)
       0.31   11.4   5.2        8.6    6.8   0.2    2.1  2  DUF4200        Domain of unknown function (DUF4200)
       0.39   10.5   6.9        2.7    7.7   0.2    2.1  2  TACC_C         Transforming acidic coiled-coil-containing pro


Domain annotation for each model (and alignments):
>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.8   1.3e-24   2.3e-21       1     116 [.      24     144 ..      24     147 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 1.3e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT......-TT-EEEEEEETTEEEEEE--STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin   1 lkeeleslqaelaqlkeaieelektletlktlkk.....edegkevlvplgaglyvkaevkdtdkvlvdlGagyyveksleeAiellkkkleelekqle 94 
                 l+eele+l++++aql+ a+++++++l  +++  k        +  vlvpl+ +lyvk+e+ +++ vlvd+G+g+ +ek+l+ A +++++k + l ++l+
  CCE28293.1  24 LDEELEHLTTSYAQLHGAQNKFKDCLRCVDSRTKsaddkTASSNSVLVPLTNSLYVKGEISNNETVLVDVGTGFLIEKKLKAARDFYEDKSNGLASNLK 122
                 5799***************************9999999999999******************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  95 kleeeleklkdqittleanlaq 116
                 +le+ ++ +++++  +e+ l++
  CCE28293.1 123 ELEAIVQRKQANVRAVEEVLRH 144
                 ***************9998876 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.3     0.004       7.1      65      96 ..      15      46 ..      10      51 .. 0.54
   2 !   13.4   0.2   3.2e-05     0.057      53     104 ..      96     147 ..      81     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.004
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2 65 eeLeerketlekeiktlekqleklekeleelk 96
                 ++L + k +l++e++ l+ ++ +l    +++k
   CCE28293.1 15 QQLSQVKQQLDEELEHLTTSYAQLHGAQNKFK 46
                 34555555555555555555555555555554 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.2e-05
                  TEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTS CS
  Prefoldin_2  53 dvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkeelqkklq 104
                  + l++++++ +++  e++ + l  ++k+le   ++++++++ ++e+l+ k++
   CCE28293.1  96 GFLIEKKLKAARDFYEDKSNGLASNLKELEAIVQRKQANVRAVEEVLRHKIM 147
                  4688999*****************************************9986 PP

>> DASH_Dad2  DASH complex subunit Dad2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1      0.01        18      15      43 ..      15      43 ..       7      70 .. 0.83
   2 !   11.1   0.1   0.00023      0.41      19      51 ..     112     144 ..     101     152 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.01
   DASH_Dad2 15 kqlrdlsdslakqleeLeeklstladgte 43
                +ql+++ ++l ++le+L + +++l+   +
  CCE28293.1 15 QQLSQVKQQLDEELEHLTTSYAQLHGAQN 43
                69999999************999987665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00023
   DASH_Dad2  19 dlsdslakqleeLeeklstladgteavasVlan 51 
                 d s+ la++l+eLe  ++  + +  av++Vl++
  CCE28293.1 112 DKSNGLASNLKELEAIVQRKQANVRAVEEVLRH 144
                 7899**************************975 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00067       1.2      25      57 ..      13      45 ..       7      51 .. 0.83
   2 ?    6.7   0.6    0.0053       9.5      22      65 ..     103     146 ..      97     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00067
         CLZ 25 eqkeleekverLessLeaLqtrlarLlaeyess 57
                e+++l +  ++L+++Le+L+t +a+L +  ++ 
  CCE28293.1 13 EPQQLSQVKQQLDEELEHLTTSYAQLHGAQNKF 45
                6778888889***************98877665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0053
         CLZ  22 agaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRi 65 
                  +a ++  e+k + L s+L+ L+  ++r  a++ ++++ L+++i
  CCE28293.1 103 LKAARDFYEDKSNGLASNLKELEAIVQRKQANVRAVEEVLRHKI 146
                 456677889****************************9999988 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.7e-05      0.03      64     118 ..      50     104 ..      37     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.7e-05
                    EEE-TTSCCHHHHHCCSSEEEE-SS-TT-B-GGGS-TT-EEEE---EEC-TTEEE CS
  THF_DHG_CYH_C  64 tvchsktkdlaeitreadivvvavGkpelikaemvkegavviDvGinrvekgklv 118
                     +++s+tk+ +++t +++ v v + +   +k+e  ++++v++DvG+  + ++kl 
     CCE28293.1  50 RCVDSRTKSADDKTASSNSVLVPLTNSLYVKGEISNNETVLVDVGTGFLIEKKLK 104
                    5789******************************************999666554 PP

>> FadA  Adhesion protein FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0015       2.7      11      49 ..       8      46 ..       4      71 .. 0.85
   2 ?    4.9   0.6      0.02        37      58      96 ..     104     142 ..      99     145 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0015
        FadA 11 kLekkeeqrykkekakaeaaaaklakkkelkakieekla 49
                +L + e q++++ k++++++ + l   +++    ++k +
  CCE28293.1  8 NLDTLEPQQLSQVKQQLDEELEHLTTSYAQLHGAQNKFK 46
                688999999*********999999998887766666655 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.02
        FadA  58 rfykdeYkellkeyksllkelekeikekekkianfeklk 96 
                 +  +d Y+++ + + s lkele+ +++k+  +  +e+++
  CCE28293.1 104 KAARDFYEDKSNGLASNLKELEAIVQRKQANVRAVEEVL 142
                 555778888999999999999999999999999999876 PP

>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.9    0.0087        16      11      29 ..      16      34 ..      11      37 .. 0.85
   2 ?    7.7   0.2    0.0018       3.3      43      82 ..     105     144 ..      79     155 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0087
                HHHHHHHHHHHHHHHHHHH CS
       Sec2p 11 eaekekkklekEledLtas 29
                +  + k++l++Ele Lt+s
  CCE28293.1 16 QLSQVKQQLDEELEHLTTS 34
                56678999*********97 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHHHHHTTHCHCCCHCTSSSSHHHHCTTT CS
       Sec2p  43 kekealekkneklkeqLkeketlleslqeqLkeLkevlek 82 
                   ++ +e k + l ++Lke e++++ +q+  +   evl +
  CCE28293.1 105 AARDFYEDKSNGLASNLKELEAIVQRKQANVRAVEEVLRH 144
                 5567789999*******************99999999865 PP

>> DUF5595  Domain of unknown function (DUF5595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2       0.2   3.6e+02      52      70 ..      13      31 ..       5      34 .. 0.78
   2 ?    9.7   0.1    0.0005       0.9      28      68 ..     107     147 ..     102     152 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.2
     DUF5595 52 qlesleeeekrLeeEierl 70
                + ++l++ ++ L eE+e+l
  CCE28293.1 13 EPQQLSQVKQQLDEELEHL 31
                5578999999999999987 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0005
     DUF5595  28 eDtFeeedaeleskLkelynvdeaqlesleeeekrLeeEie 68 
                 +D +e+  + l s Lkel ++ +++ ++  + e++L + i 
  CCE28293.1 107 RDFYEDKSNGLASNLKELEAIVQRKQANVRAVEEVLRHKIM 147
                 799******************************99988775 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.2    0.0048       8.6      23      67 ..      18      62 ..      12      68 .. 0.51
   2 ?    6.7   1.0    0.0053       9.4       9      56 ..      97     144 ..      95     153 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0048
     DUF4200 23 qrleealkqreeelekkeqeleedllkfdkflkendakraralkk 67
                 + +++l+++ e l  + ++l    +kf+  l+  d++++ a  k
  CCE28293.1 18 SQVKQQLDEELEHLTTSYAQLHGAQNKFKDCLRCVDSRTKSADDK 62
                344455555555555555555555555555555555555555544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0053
     DUF4200   9 fevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflke 56 
                 f+++++l+a+++ ++ + + l++  +ele+  q+ + ++  +++ l++
  CCE28293.1  97 FLIEKKLKAARDFYEDKSNGLASNLKELEAIVQRKQANVRAVEEVLRH 144
                 789999***********************9999999999999998875 PP

>> TACC_C  Transforming acidic coiled-coil-containing protein (TACC), C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2    0.0015       2.7      69     105 ..      13      49 ..       7      65 .. 0.84
   2 ?    5.4   2.1    0.0077        14     141     186 ..     100     145 ..      98     150 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0015
      TACC_C  69 eiqkvleekeqlladlnsveksfsdlfkryekqkevl 105
                 e q++ + k+ql ++l+++ +s+++l+   +k k+ l
  CCE28293.1  13 EPQQLSQVKQQLDEELEHLTTSYAQLHGAQNKFKDCL 49 
                 5577888899999999999*******99999999876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0077
      TACC_C 141 eekLekAneeiaqvrskakaetaalqasLrkeqlkvqSLeksleqK 186
                 e+kL+ A    ++ ++  +++++ l+a  +++q +v ++e+ l+ K
  CCE28293.1 100 EKKLKAARDFYEDKSNGLASNLKELEAIVQRKQANVRAVEEVLRHK 145
                 89999999999999*****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1551  (0.0865079); expected 358.6 (0.02)
Passed bias filter:                      757  (0.0422221); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1195.56
//
Query:       CCE28294.1  [L=474]
Description: uncharacterized protein CPUR_01769 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.089   12.4   0.1       0.16   11.6   0.1    1.3  1  Astacin   Astacin (Peptidase family M12A)


Domain annotation for each model (and alignments):
>> Astacin  Astacin (Peptidase family M12A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   8.8e-06      0.16      45     116 ..     199     271 ..     181     288 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.8e-06
                 SSSCEEEEE--SSCEE-SS--SSE.EEEEE-CCC-SHHHHHHHHHHHHTB--GGGSTTGGGTEEE-GGGB-TT CS
     Astacin  45 seenylkvtkaegClssvgraggk.qevslgkgCeklgiivHElmHalGffHeqsRtdrdeyvsinkeniekg 116
                  + n +++ +    +s++gr+gg+  e  l++++  l +i H l  + GffH ++     + +si+ ++++ +
  CCE28294.1 199 GNPNEMRFAEFASMASQYGRRGGAdFEARLQSSGPVLHMIRHILQPTTGFFHSHQNLSFHDTISIKLQEVTLE 271
                 677888999999999******66526999999999*******************************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3646.44
//
Query:       CCE28295.1  [L=713]
Description: related to origin recognition protein Orc1p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-16   60.3   0.0    5.5e-16   59.2   0.0    1.6  1  AAA           ATPase family associated with various cellular 
    1.6e-12   48.1   0.1    1.5e-10   41.7   0.0    3.0  2  AAA_16        AAA ATPase domain
    6.9e-12   45.4   0.1    1.7e-11   44.1   0.1    1.6  1  AAA_lid_10    AAA lid domain
      2e-09   37.3   0.0    5.2e-09   36.0   0.0    1.6  1  BAH           BAH domain
    1.1e-08   35.5   0.0    3.6e-08   33.8   0.0    1.9  2  AAA_22        AAA domain
     0.0013   19.1   0.0     0.0034   17.7   0.0    1.7  1  AAA_19        AAA domain
     0.0021   18.0   0.0      0.032   14.1   0.0    2.2  1  ATPase_2      ATPase domain predominantly from Archaea
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.026   14.3   0.0    1.4  1  AAA_11        AAA domain
       0.02   14.8   0.0      0.042   13.8   0.0    1.5  1  NACHT         NACHT domain
      0.022   15.3   0.0      0.056   14.0   0.0    1.8  1  AAA_18        AAA domain
       0.04   13.2   0.0      0.064   12.5   0.0    1.3  1  DUF2075       Uncharacterized conserved protein (DUF2075)
      0.042   14.1   0.0      0.087   13.1   0.0    1.6  1  AAA_28        AAA domain
      0.073   13.5   0.0       0.23   11.9   0.0    1.9  1  RNA_helicase  RNA helicase
       0.12   11.1   0.0       0.19   10.5   0.0    1.2  1  AAA_32        AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   4.3e-19   5.5e-16       1     129 [.     334     476 ..     334     479 .. 0.84

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 4.3e-19
                 EEEESSTTSSHHHHHHHHHHHHTHE..........EEEEETTTCSSS............STTHHHHHHHHHHHHHHHTS....TSEEEEEETGGGHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgve..........fleisgsellsk............yvgesekkirelfkeakeka....kpsilfiDEidalaks 73 
                 ++++G+pGtGKT++++ v+  l+ +          f+ei+g+++++                +s+++  +l+++  ++      p+++++DE+d+l+++
  CCE28295.1 334 IYISGTPGTGKTATVREVIARLEESvrsdelddfiFVEINGMKITDPhqsyallwealrGERASPSQALDLLEREFSNPsprrVPCVVLMDELDQLVTK 432
                 5899*****************95222244555555**********668********98866667777778887744444688788************** PP

                 HTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEEE CS
         AAA  74 rsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkie 129
                 +           ++++++++++ + ++s++iv++++n++d +++ l  +++++++ 
  CCE28295.1 433 N-----------QAVMYNFFNWPTLRHSRLIVLAVANTMDLPERTLS-NKISSRLG 476
                 *...........*********************************99.88887765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   1.2e-13   1.5e-10       2     169 ..     308     452 ..     307     454 .. 0.78
   2 ?    2.8   0.0      0.11   1.4e+02     120     164 ..     599     642 ..     493     648 .. 0.78

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.2e-13
      AAA_16   2 lvGReeeleqLlsale.rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawre 99 
                 l++Re e + + s le ++++g+++++++sG +G+GK++ vre+  +le++   + + + d++            + + e+     +++ ++ +  w +
  CCE28295.1 308 LPCREGEFSLVYSHLEaSISEGTGNCIYISGTPGTGKTATVREVIARLEES---VRSDELDDF------------I-FVEINGMKITDPHQSYALLWEA 390
                 89**************78888888***************************...455555555............2.2344444444444446666766 PP

      AAA_16 100 kleealaavpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrllesk.pllv 169
                    e+++         +s+ l+ll r ++  s+++ p v+++D+l+++ +  ++++++++  ++ + ++l+
  CCE28295.1 391 LRGERAS---------PSQALDLLEREFSNPSPRRVPCVVLMDELDQLVTKNQAVMYNFFNWPTLRhSRLI 452
                 5555444.........59999*******88888899*************9999999999988777544444 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.11
      AAA_16 120 lellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlles 164
                 ++ll r+  ++   e ++  ++D+lq+a ++ + +l+ +++ le+
  CCE28295.1 599 AALLLRIR-RTGLAETTFGETVDELQRATAHAAPALPGMAQILEN 642
                 33444444.3333355688899***************99998875 PP

>> AAA_lid_10  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.1   1.3e-14   1.7e-11      46      81 ..     507     542 ..     497     545 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 1.3e-14
                 -----HHHHHHHHHHT-TTTTHHHHHHHHHHHHHHH CS
  AAA_lid_10  46 sddaieiasrkvAsvsgdarrAlkiCkrAvEiaekd 81 
                  +da++ asrkvA vsgdarrAl iC+rAvEiae++
  CCE28295.1 507 DADAVQFASRKVAAVSGDARRALDICRRAVEIAENE 542
                 689******************************986 PP

>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   4.1e-12   5.2e-09       4     117 ..      82     200 ..      80     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 4.1e-12
                 ETTGEEEEEETTSTTEEEEEEEEEEEEETTSTCEEEEEEEEEEECGGGSTTTTHCCCT...TEEEEEEEEEEEEGGGEEEEEEEEEHHHHCTECCHCH. CS
         BAH   4 avGdfVyfddtstdepyqirrIeeLkenakneeaeatvlvdwflrpeetksalklrqk...rElfltrqseilplaairgkcrVvllsdleeaqnylp. 98 
                 + Gd V+++ +  ++ + ++ I e+ e++ +   e+ ++  wf++ +e++ ++k  +    +El+ t+  +i pla+i gk++V +l ++ +a +  + 
  CCE28295.1  82 RIGDTVLLKAEG-SNEAWVAIIGEFVEDDGDG--EKAANFMWFSTEKEIRNKDKKIKDfywNELYITPSWDINPLASINGKAKVSSLDSFLSAYPSGKi 177
                 68*********9.*******************..9**************444444444577*********************************99999 PP

                 ....HCSTTEEEEEEEEETTTTE CS
         BAH  99 ....kklddtFycslvydptakt 117
                     +   +tF+c+  ++  + t
  CCE28295.1 178 prssQAYGKTFVCRRGCNTRTAT 200
                 99999999*****9999887665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       7.6   9.7e+03      17      24 ..     185     192 ..     184     202 .. 0.83
   2 !   33.8   0.0   2.8e-11   3.6e-08       4     112 ..     330     441 ..     327     466 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7.6
      AAA_22  17 GKTtllrr 24 
                 GKT+++rr
  CCE28295.1 185 GKTFVCRR 192
                 9*****98 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 2.8e-11
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelkaerlsseell.ealeqalraravielliiDEa 100
                 t +++++ G +GtGKT ++r++  +l+e    +e  +  +v+++  + t++ + +  l +al  e+ + + +  +ll + + + + +r    +++ DE 
  CCE28295.1 330 TGNCIYISGTPGTGKTATVREVIARLEESVRSDElDDFIFVEINGMKITDPHQSYALLWEALRGERAS-PSQALDLLeREFSNPSPRRVP-CVVLMDEL 426
                 789***********************766555555555555666666669************998888.777777777888888888888.******** PP

      AAA_22 101 qhlr...seealeeL 112
                 + l    ++ +++++
  CCE28295.1 427 DQLVtknQAVMYNFF 441
                 **9765436666655 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.6e-06    0.0034       7      38 ..     328     359 ..     322     375 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.6e-06
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelg 38 
                 + + +++ + + pGtGKT ++++++a l+e  
  CCE28295.1 328 EGTGNCIYISGTPGTGKTATVREVIARLEESV 359
                 5567899*******************998764 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.5e-05     0.032      10      47 ..     321     358 ..     318     461 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.5e-05
    ATPase_2  10 eleeilerepneiyfiYGpegsGKtaLlkeiienledk 47 
                  le  +++++ + ++i G  g GKta ++e+i +le++
  CCE28295.1 321 HLEASISEGTGNCIYISGTPGTGKTATVREVIARLEES 358
                 5788899***************************9774 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.1e-05     0.026      19      42 ..     333     356 ..     319     392 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.1e-05
      AAA_11  19 itliqGPPGtgKTktivellsqll 42 
                    i+G PGtgKT t+ e++++l 
  CCE28295.1 333 CIYISGTPGTGKTATVREVIARLE 356
                 5689******************94 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.3e-05     0.042       3     126 ..     334     454 ..     332     479 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.3e-05
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEE.EETTTTTTS-....-HCHHHCCCCTS--SSS-C...CHHHHCCSCCCEEEEEE-STT-SS- CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFf.lslrelsrsgna.rsladllfsqlpepaapvse...vwavllelperlLlilDglDelvtd 96 
                 + + G +G GKT+ +++++  + e+    +  +++F+ ++  +++++ ++   l + l+ +   p+++ +     +++   ++   + ++D lD+lvt+
  CCE28295.1 334 IYISGTPGTGKTATVREVIARLEESVRSDELDDFIFVeINGMKITDPHQSyALLWEALRGERASPSQALDLlerEFSNPSPRRVPCVVLMDELDQLVTK 432
                 6899*********************9888766777662233334444433345555555555555554443434455555555556699********99 PP

                 TCH.........HHHHHCTTTTT--EEEEE CS
       NACHT  97 lgqkekqpvrtlLselirkkllpeaslllt 126
                 +++        ++ + ++   l+ ++l++ 
  CCE28295.1 433 NQA--------VMYNFFNWPTLRHSRLIVL 454
                 998........6666666666666666554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.4e-05     0.056       1      44 [.     334     380 ..     334     462 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.4e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf..gvnlrdvakenglllevdpe 44 
                 I ++GtpG+GKt   +e+  rl ++  +++l d ++ +      +++
  CCE28295.1 334 IYISGTPGTGKTATVREVIARLeESvrSDELDDFIFVEINGMKITDP 380
                 789*********99999966654667866666666655544444444 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     5e-05     0.064       3     105 ..     333     434 ..     331     454 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5e-05
     DUF2075   3 vvlVtGvaGtGKtvvllnllael.eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrl 100
                 ++ ++G +GtGKt    +++a+l e+ ++++   ++ v  + +++   + ++    +  + + + +s+    l+  ++  +  +++  +vv++DE   l
  CCE28295.1 333 CIYISGTPGTGKTATVREVIARLeESVRSDELDDFIFVEINGMKITDPHQSYALLWEALRGERASPSQALDLLE--REFSNPSPRRVPCVVLMDELDQL 429
                 788********************666678888889988888888888888888877777777777788777777..66677777777888888888777 PP

     DUF2075 101 ltksd 105
                  tk++
  CCE28295.1 430 VTKNQ 434
                 77544 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.8e-05     0.087       1      22 [.     333     354 ..     333     396 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.8e-05
      AAA_28   1 kivitGgestGKTtlleaLaar 22 
                 +i+i+G+++tGKT ++++  ar
  CCE28295.1 333 CIYISGTPGTGKTATVREVIAR 354
                 59**************997766 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.23       1      35 [.     334     368 ..     334     384 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvy 35 
                   i+++G +g+GK+ +++e++++l++++ +++ d+++
    CCE28295.1 334 IYISGTPGTGKTATVREVIARLEESVRSDELDDFI 368
                   79*********************999777766665 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00015      0.19      30      68 ..     331     371 ..     324     396 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
      AAA_32  30 gYNifvlGesgtGrttlvkrlleeiakk..eptpdDwcYvn 68 
                 g  i+++G +gtG+t +v++++ + +++   +  dD ++v 
  CCE28295.1 331 GNCIYISGTPGTGKTATVREVIARLEESvrSDELDDFIFVE 371
                 5569******************9987651145557999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4891.68
//
Query:       CCE28296.1  [L=469]
Description: probable pleiotropic regulator 1 (PLRG1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-43  144.8  14.8    1.1e-08   35.6   0.2    7.3  7  WD40         WD domain, G-beta repeat
    6.5e-05   23.2   0.3         11    6.4   0.1    4.7  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0044   15.7   1.7        9.4    4.7   0.1    4.1  5  Nup160       Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.2   1.8e-12   1.1e-08       1      38 []     150     188 ..     150     188 .. 0.94
   2 !   28.5   0.0   3.2e-10   1.9e-06       4      38 .]     195     230 ..     192     230 .. 0.93
   3 !   28.2   0.2   3.9e-10   2.4e-06       2      38 .]     235     272 ..     234     272 .. 0.96
   4 !   21.7   0.2   4.3e-08   0.00026       2      38 .]     277     314 ..     276     314 .. 0.88
   5 !   15.8   0.0   3.3e-06      0.02       1      38 []     318     355 ..     318     355 .. 0.93
   6 !    7.8   0.0    0.0011       6.6       4      38 .]     362     396 ..     359     396 .. 0.84
   7 !   12.1   0.0   4.7e-05      0.28      17      38 .]     425     446 ..     399     446 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 1.8e-12
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++++r+++GH ++v++la+ p ++w+asG  D+t++iWd
  CCE28296.1 150 WKLMRVISGHlGWVRALAVEPGNKWFASGAGDRTIKIWD 188
                 67899************************56*******9 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 3.2e-10
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                   tltGH s v++la+sp +++l+s+++D+ v+ Wd
  CCE28296.1 195 RLTLTGHiSTVRGLAVSPRHPYLFSCGEDKMVKCWD 230
                 5689*******************************9 PP

  == domain 3  score: 28.2 bits;  conditional E-value: 3.9e-10
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + +r++ GH s+v+ la +p  + l++G++Dg  r+Wd
  CCE28296.1 235 KVIRHYHGHlSGVYTLALHPTLDVLVTGGRDGVARVWD 272
                 5689*********************************9 PP

  == domain 4  score: 21.7 bits;  conditional E-value: 4.3e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++++l+GH + v++l+ +   + ++++s D tvr+Wd
  CCE28296.1 277 SNIHVLSGHtGTVSDLKCQEADPQVITASLDSTVRLWD 314
                 689******777****98888888889999*******9 PP

  == domain 5  score: 15.8 bits;  conditional E-value: 3.3e-06
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+++++lt H ++v++la++p    +asGs  g+++ W+
  CCE28296.1 318 GKTMGVLTHHkKGVRALAVHPTEFTFASGS-TGSIKQWK 355
                 578899**9*999*****************.*******6 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0011
                 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 ++ ++G++  ++ +++++++ ++ sG+d+g+  +Wd
  CCE28296.1 362 MQNFEGQNAiINTMSVNQNNVLF-SGGDNGSMGFWD 396
                 57799997757999999999996.8**9***99998 PP

  == domain 7  score: 12.1 bits;  conditional E-value: 4.7e-05
                 EEETTSSEEEEEETTSEEEEEE CS
        WD40  17 afspdgawlasGsdDgtvriWd 38 
                  f+++g  l++G  D+t++iW+
  CCE28296.1 425 TFDRSGLRLICGEADKTIKIWK 446
                 49999999**9977*******6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0031        19      39      76 ..     161     198 ..     145     205 .. 0.85
   2 !    4.4   0.0    0.0077        46      39      78 ..     203     242 ..     199     251 .. 0.89
   3 !    5.4   0.1    0.0036        22      22      87 ..     229     292 ..     222     297 .. 0.79
   4 !    6.4   0.1    0.0018        11      27      81 ..     268     329 ..     250     338 .. 0.77
   5 ?   -0.8   0.0      0.33     2e+03      48      80 ..     378     410 ..     351     428 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0031
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  + vr+La +p +k +a +  d ++++ d  sg +  +l
   CCE28296.1 161 GWVRALAVEPGNKWFASGAGDRTIKIWDLASGSLRLTL 198
                  5699***************************9987665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0077
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                  s+vr+La +p    L    +d  v+  d e+ kv+++++ 
   CCE28296.1 203 STVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHG 242
                  689*********************************9865 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0036
  ANAPC4_WD40  22 fRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                    l+ ++v     +++ s v  La +p   +L+ +  dg  r+ d+ +   +h ls ++  +v+ l
   CCE28296.1 229 WDLETNKVIRH-YHGHLSGVYTLALHPTLDVLVTGGRDGVARVWDMRTRSNIHVLSGHTG-TVSDL 292
                  55566666666.5677788999*******************************9998887.47666 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0018
  ANAPC4_WD40  27 qrvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                   rvw++         +++ ++v++L+ ++ +     a  d++vrl d   gk++  l+ +++
   CCE28296.1 268 ARVWDMrtrsnihVLSGHTGTVSDLKCQEADPQVITASLDSTVRLWDLAAGKTMGVLTHHKK 329
                  45666555555554467899999****99999999999**************9999988876 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.33
  ANAPC4_WD40  48 pdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  +++++L  + ++g++ + d ++g+  ++l++++
   CCE28296.1 378 NQNNVLFSGGDNGSMGFWDWKTGHRFQALDTTA 410
                  456889999999999999999998888777665 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.11   6.8e+02     239     252 ..     181     194 ..     179     208 .. 0.85
   2 !    4.7   0.0    0.0017        10     230     255 ..     214     239 ..     190     245 .. 0.84
   3 ?    2.0   0.0      0.01        61     231     253 ..     257     279 ..     245     300 .. 0.84
   4 !    4.7   0.1    0.0016       9.4     233     253 ..     301     321 ..     292     350 .. 0.84
   5 ?   -1.6   0.0      0.13     8e+02     219     259 ..     372     409 ..     358     456 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.11
                 T-EEEEEETTTTEE CS
      Nup160 239 dgkLrvWnlltgkc 252
                 d+++++W+l++g++
  CCE28296.1 181 DRTIKIWDLASGSL 194
                 89*******99986 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0017
                 TTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclat 255
                   ylf+   d+ ++ W+l+t+k++++
  CCE28296.1 214 HPYLFSCGEDKMVKCWDLETNKVIRH 239
                 56999999**************9976 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.01
                 TEEEEEETT-EEEEEETTTTEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkcl 253
                 ++l++  rdg+ rvW+ +t + +
  CCE28296.1 257 DVLVTGGRDGVARVWDMRTRSNI 279
                 56777789**********98765 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.0016
                 EEEEETT-EEEEEETTTTEEE CS
      Nup160 233 lfalsrdgkLrvWnlltgkcl 253
                 + ++s+d ++r+W+l+ gk++
  CCE28296.1 301 VITASLDSTVRLWDLAAGKTM 321
                 789************999876 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 0.13
                 EEEET.....TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 219 ldvavavveigqtylfalsrdgkLrvWnlltgkclatidll 259
                 +++++  v+ ++++lf+   +g +  W+ +tg +    d++
  CCE28296.1 372 INTMS--VN-QNNVLFSGGDNGSMGFWDWKTGHRFQALDTT 409
                 33333..44.9999999999999999999999888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3335.95
//
Query:       CCE28297.1  [L=246]
Description: related to 26s proteasome subunit p28 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-32  110.9   0.9    1.1e-09   38.7   0.1    4.2  4  Ank_4     Ankyrin repeats (many copies)
    2.7e-31  107.2   0.2    8.9e-09   35.4   0.1    4.2  4  Ank_5     Ankyrin repeats (many copies)
    8.9e-29   99.9   0.1    8.2e-11   42.3   0.0    3.1  3  Ank_2     Ankyrin repeats (3 copies)
    1.1e-27   93.0   0.1    0.00015   21.9   0.0    5.4  5  Ank_3     Ankyrin repeat
    4.5e-23   80.6   0.5    0.00014   22.1   0.0    5.2  5  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   2.6e-11   9.4e-08       4      43 ..      49      88 ..      46      90 .. 0.91
   2 !   33.6   0.1   1.1e-11   4.1e-08      14      55 .]      94     134 ..      88     134 .. 0.93
   3 !   38.7   0.1     3e-13   1.1e-09       4      54 ..     154     203 ..     153     204 .. 0.93
   4 ?    4.5   0.0     0.015        55      15      42 ..     198     224 ..     195     224 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 2.6e-11
       Ank_4  4 aLhyaaisgrlelvrlLlek.gadinaqdnrsGetalhiAa 43
                a+h+aa+s++le+v lL ++ + d++ q ++sG+t++ i a
  CCE28297.1 49 AIHWAASSNNLEMVTLLASQkNFDPDVQ-DGSGWTPFMISA 88
                79****************7648******.********9976 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 1.1e-11
       Ank_4  14 lelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                  ++++lLl+kga++n+  n+sG+talh+ a++++++ +++Ll
  CCE28297.1  94 QPILHLLLQKGANVNEK-NSSGQTALHFIASKNHIDTARFLL 134
                 6789************9.***********************8 PP

  == domain 3  score: 38.7 bits;  conditional E-value: 3e-13
       Ank_4   4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 ++h+aa++g l++  lLle++  +na  +++G t+lh+A+  g+ +++  L
  CCE28297.1 154 PIHRAAAAGSLPMTNLLLERRSPVNAA-DIEGYTPLHHAIAEGHGDVAVAL 203
                 69************************8.************99998887666 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.015
       Ank_4  15 elvrlLlekgadinaqdnrsGetalhiA 42 
                 +++  L+ +gad     n+++e +l+ A
  CCE28297.1 198 DVAVALVKHGADFSIK-NAQDELPLDLA 224
                 678899*********8.*******9877 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.1e-09   3.8e-06       1      53 [.      31      84 ..      31      86 .. 0.93
   2 !   22.1   0.0   3.9e-08   0.00014       1      38 [.     100     137 ..     100     144 .. 0.90
   3 !   22.2   0.0   3.6e-08   0.00013       7      49 ..     142     184 ..     139     184 .. 0.92
   4 !   35.4   0.1   2.5e-12   8.9e-09       9      56 .]     177     224 ..     175     224 .. 0.97

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.1e-09
       Ank_5  1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltal 53
                Ll+ +p     +d +g  ++h+Aa+ +++++v lL    + d++++d++G+t++
  CCE28297.1 31 LLKTDPKLAIKKDDDGRYAIHWAASSNNLEMVTLLAsQKNFDPDVQDGSGWTPF 84
                67778888889999**************************************97 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 3.9e-08
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl.ar 38 
                 Ll++g a+vn ++  g+t+Lh+ a++++ d +r+Ll  +
  CCE28297.1 100 LLQKG-ANVNEKNSSGQTALHFIASKNHIDTARFLLdIP 137
                 89999.******************************444 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 3.6e-08
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49 
                 a++  +d++g+ p+h Aa +g++++ +lLl+r++  n+ d +G
  CCE28297.1 142 ASTRVRDRRGQYPIHRAAAAGSLPMTNLLLERRSPVNAADIEG 184
                 5677899******************************999876 PP

  == domain 4  score: 35.4 bits;  conditional E-value: 2.5e-12
       Ank_5   9 vnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 vn+ d +g+tpLh+A+  g+ dv+  L+++gad  +++++ +++ldlA
  CCE28297.1 177 VNAADIEGYTPLHHAIAEGHGDVAVALVKHGADFSIKNAQDELPLDLA 224
                 788999*****************************************9 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   2.3e-14   8.2e-11      19      83 .]      33     111 ..      15     111 .. 0.83
   2 !   28.0   0.0     7e-10   2.5e-06       2      48 ..      85     136 ..      84     152 .. 0.77
   3 !   39.8   0.0   1.4e-13   5.2e-10      24      83 .]     148     214 ..     136     214 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 2.3e-14
       Ank_2  19 gadpn....k..ngktaLhyAakngnleivklLleh.......adndgrtpLhyAars.ghleivklLlekgadinlkd 83 
                 ++dp+    k  +g+ a+h+Aa+++nle+v lL ++       +d +g+tp +++a+  +++ i+ lLl+kga++n k+
  CCE28297.1  33 KTDPKlaikKddDGRYAIHWAASSNNLEMVTLLASQknfdpdvQDGSGWTPFMISASLpNSQPILHLLLQKGANVNEKN 111
                 4666665532579*********************9667676655588*********889999**************986 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 7e-10
       Ank_2   2 hlAakn.gnlelvklLl.egadpn.k..ngktaLhyAakngnleivklLleh 48 
                 ++ a+  ++ ++++lLl +ga++n k   g+taLh+ a++++++++++Ll+ 
  CCE28297.1  85 MISASLpNSQPILHLLLqKGANVNeKnsSGQTALHFIASKNHIDTARFLLDI 136
                 667775354579*****9*****98357**********************83 PP

  == domain 3  score: 39.8 bits;  conditional E-value: 1.4e-13
       Ank_2  24 k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 +  g+ ++h Aa +g+l +  lLle       ad +g+tpLh+A+ +gh +++  L+++gad+ +k+
  CCE28297.1 148 DrRGQYPIHRAAAAGSLPMTNLLLERrspvnaADIEGYTPLHHAIAEGHGDVAVALVKHGADFSIKN 214
                 3589********************966786677799*********************99***99886 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.2e-06    0.0044       1      30 [.      45      74 ..      45      75 .. 0.90
   2 !   17.0   0.0   1.7e-06     0.006       2      30 ..      80     108 ..      79     109 .. 0.94
   3 !   16.2   0.0   2.9e-06     0.011       2      26 ..     114     138 ..     113     141 .. 0.88
   4 !   13.8   0.0   1.8e-05     0.064       2      30 ..     151     178 ..     150     179 .. 0.91
   5 !   21.9   0.0   4.2e-08   0.00015       1      30 [.     183     211 ..     183     212 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvn 30
                +G++++h+Aa+s+nle+v +L  +k+ d++
  CCE28297.1 45 DGRYAIHWAASSNNLEMVTLLASQKNFDPD 74
                69**************99999998888886 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.7e-06
       Ank_3   2 GetpLhlAarsgnle.ivkfLlenkgadvn 30 
                 G+tp+++ a+  n   i+++Ll+ kga+vn
  CCE28297.1  80 GWTPFMISASLPNSQpILHLLLQ-KGANVN 108
                 9*************77*******.9****9 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 2.9e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkg 26 
                 G+t+Lh+ a+ ++++ ++fLl+++ 
  CCE28297.1 114 GQTALHFIASKNHIDTARFLLDIPP 138
                 9********************9544 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 1.8e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G++p+h+Aa +g+l++  +Lle +  +vn
  CCE28297.1 151 GQYPIHRAAAAGSLPMTNLLLE-RRSPVN 178
                 9*********************.888877 PP

  == domain 5  score: 21.9 bits;  conditional E-value: 4.2e-08
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G+tpLh+A+  g+ +++ +L++ +gad+ 
  CCE28297.1 183 EGYTPLHHAIAEGHGDVAVALVK-HGADFS 211
                 69*********************.9***86 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   5.7e-05       0.2       1      30 [.      45      76 ..      45      77 .. 0.75
   2 !   18.9   0.0   4.2e-07    0.0015       2      31 ..      80     111 ..      79     112 .. 0.83
   3 !    9.8   0.0   0.00032       1.1       2      22 ..     114     134 ..     113     144 .. 0.81
   4 !   11.7   0.0   7.8e-05      0.28       2      31 ..     151     181 ..     150     182 .. 0.88
   5 !   22.1   0.0     4e-08   0.00014       2      31 ..     184     217 ..     183     218 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.7e-05
                TSBBHHHHHHHHTTHHHHHHHH.T.TTSTTCB CS
         Ank  1 dGnTPLHlAatngkkriiklLL.h.GAnlnal 30
                dG+++ H+Aa+ ++++++ lL  +   +++ +
  CCE28297.1 45 DGRYAIHWAASSNNLEMVTLLAsQkNFDPDVQ 76
                8*********99*******6644323556655 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 4.2e-07
                 SBBHHHHHH.HHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAa.tngkkriiklLL.hGAnlnald 31 
                 G+TP ++ a  +++  i++lLL +GAn+n ++
  CCE28297.1  80 GWTPFMISAsLPNSQPILHLLLqKGANVNEKN 111
                 9*****7554777788******77*****887 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00032
                 SBBHHH.HHHHHTTHHHHHHHH CS
         Ank   2 GnTPLH.lAatngkkriiklLL 22 
                 G T+LH +A+  ++ + +++LL
  CCE28297.1 114 GQTALHfIAS-KNHIDTARFLL 134
                 99****6666.78888999998 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 7.8e-05
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G +P H+Aa  g++ ++ lLL +++ +na d
  CCE28297.1 151 GQYPIHRAAAAGSLPMTNLLLeRRSPVNAAD 181
                 99*****99999999******7777789988 PP

  == domain 5  score: 22.1 bits;  conditional E-value: 4e-08
                 SBBHHHHHHHHTTHHHHHHHH.TTTS..T.TCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAn..l.nald 31 
                 G+TPLH A+ +g+ +++ +L+ hGA+  + na+d
  CCE28297.1 184 GYTPLHHAIAEGHGDVAVALVkHGADfsIkNAQD 217
                 9********888888**********966557776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1904.83
//
Query:       CCE28298.1  [L=900]
Description: related to transcription factor TMF [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-39  135.3   7.6      1e-39  135.3   7.6    8.4  7  TMF_TATA_bd    TATA element modulatory factor 1 TATA binding
    2.7e-16   59.3  11.5    2.7e-16   59.3  11.5    8.7  9  TMF_DNA_bd     TATA element modulatory factor 1 DNA binding
    0.00032   21.0   2.7    0.00032   21.0   2.7    6.9  6  ATG16          Autophagy protein 16 (ATG16)
  ------ inclusion threshold ------
       0.11   12.5  11.2         13    5.8   0.0    4.7  4  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
       0.42   10.6   1.9       0.65   10.0   0.0    2.4  2  Holin_BhlA     BhlA holin family
       0.47   10.9   5.4       0.39   11.2   0.9    3.3  2  CRR7           Protein CHLORORESPIRATORY REDUCTION 7
        9.5    6.3  29.8        1.3    9.1   0.4    5.8  5  DUF1664        Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3      0.17   4.4e+02      37      71 ..     127     161 ..     117     169 .. 0.83
   2 ?   -0.6   5.8      0.57   1.5e+03      48      82 ..     214     249 ..     189     274 .. 0.59
   3 ?   -3.6   8.8         5   1.3e+04      51      98 ..     291     338 ..     249     344 .. 0.71
   4 ?   -4.1   8.8         7   1.8e+04      39      84 ..     369     415 ..     348     433 .. 0.62
   5 ?   -4.6  10.3         7   1.8e+04      20      78 ..     446     514 ..     421     524 .. 0.63
   6 ?   -6.4  19.9         7   1.8e+04      32     101 ..     573     618 ..     503     646 .. 0.57
   7 !  135.3   7.6   3.9e-43     1e-39       2     114 ..     785     897 ..     784     898 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.17
  TMF_TATA_bd  37 rleaerdeareeivklmkeneelkelkkeleelek 71 
                  ++e++r ++++e v+  ++n   + + +e++++++
   CCE28298.1 127 SIEQQRADTNNETVAAKQDNAHSEVEGAESNDVSS 161
                  6899************9999999998888887766 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.57
  TMF_TATA_bd  48 eivklmkeneelke.lkkeleelekeleelqeryet 82 
                    ++l+++n ++ + +++  +el+kel++l++r+++
   CCE28298.1 214 ARLSLSEQNSSVLAaNDAIQSELTKELQDLKDRHQE 249
                  445566555554440444456777777777777764 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 5
  TMF_TATA_bd  51 klmkeneelkelkkeleelekeleelqeryetlLellGeksEeveELr 98 
                  kl ++ e+ + l +e ++l+++  +l++  ++l  llGe + +  +L+
   CCE28298.1 291 KLAEKDEKIALLMEEGQKLSANEHKLRTTTKKLRALLGENEKQLVDLK 338
                  445556666666666666666777777777777777777777777766 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 7
  TMF_TATA_bd  39 eaerdeareeivklmkeneelkelkkele.elekeleelqeryetlL 84 
                  ++   ++r+ei +l +en ++++++++le e +k++e+ ++ +  +L
   CCE28298.1 369 NRVAASLRKEIDSLKRENSKKDDAHRRLElEWKKKMEQAETSHRDAL 415
                  33334556666666666666666666655445556666666555554 PP

  == domain 5  score: -4.6 bits;  conditional E-value: 7
  TMF_TATA_bd  20 eirrlEgEla.slkeelerleaerdeareeivklmkeneelkelkkeleelek.........eleelqe 78 
                  + r+ E+E + +l++  er  +  +e+++e++++  + e+++ +++e +  +          ++e lq+
   CCE28298.1 446 QARQDEIEWHeKLERAHERARKTENELKAELLAVEGKLEAMRVAAEEASAGNGgeaqvkmfrQMETLQS 514
                  456667776524566667777777777777777777777777776666655444445555555555555 PP

  == domain 6  score: -6.4 bits;  conditional E-value: 7
  TMF_TATA_bd  32 keelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGeksEeveELraDv 101
                  +  l++  +e  + r+                        e+++lq  y+++   l e  Ee + L+  v
   CCE28298.1 573 QPALTSTRQELTTCRD------------------------EMAKLQASYKSCEASLAEAREELDKLKHGV 618
                  2222222222222222........................333333333333333333333333333322 PP

  == domain 7  score: 135.3 bits;  conditional E-value: 3.9e-43
  TMF_TATA_bd   2 sstssagpsvqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGeksEeveELra 99 
                  +st++agpsvqlver+s++irrlE+E+ ++kee++r+  +rdear ++v+lmk++ee+k++++++ +le+e+++l+ ry+t+Le+lGeksE veELra
   CCE28298.1 785 VSTVAAGPSVQLVERMSAAIRRLEAEKVTAKEEMARVCGQRDEARTDLVALMKQMEETKAAASRVPNLENEVASLDARYQTTLEMLGEKSELVEELRA 882
                  799*********************************************************************************************** PP

  TMF_TATA_bd 100 DvaDlKemykeqveq 114
                  Dv+D+K+my+e+ve+
   CCE28298.1 883 DVEDVKAMYRELVER 897
                  *************97 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       5.1   1.3e+04      54      73 ..      78      97 ..      76      97 .. 0.78
   2 ?   -4.1   0.4       6.3   1.6e+04      44      64 ..     134     154 ..     129     161 .. 0.53
   3 ?   -0.5   6.4      0.51   1.3e+03      12      52 ..     231     275 ..     220     282 .. 0.60
   4 !   59.3  11.5   1.1e-19   2.7e-16       2      74 .]     287     359 ..     286     359 .. 0.96
   5 ?    0.9   2.2      0.17   4.5e+02      43      73 ..     359     389 ..     358     390 .. 0.87
   6 ?   -8.5  13.1         7   1.8e+04      24      49 ..     415     440 ..     387     469 .. 0.56
   7 ?    0.3   1.4      0.28   7.1e+02      24      70 ..     537     583 ..     528     587 .. 0.65
   8 ?   -3.3   8.5       3.6   9.1e+03      20      62 ..     582     629 ..     576     641 .. 0.64
   9 ?    2.5   1.5     0.059   1.5e+02      17      71 ..     838     892 ..     834     894 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.1
  TMF_DNA_bd 54 kkleklekeleeleerlkea 73
                ++ ++ ++  ++l++rl++a
  CCE28298.1 78 SRSSSRNRANDRLQARLAQA 97
                56778888899999999875 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 6.3
  TMF_DNA_bd  44 elekeikelkkkleklekele 64 
                 ++++e    k+ ++ +e e +
  CCE28298.1 134 DTNNETVAAKQDNAHSEVEGA 154
                 444555555555555555544 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.51
  TMF_DNA_bd  12 eqIaqLmeEGekLskk....elklnntikkLrkknkelekeikel 52 
                 ++  +L +E+++L++      +++ + i++L +k++ l k+ +e+
  CCE28298.1 231 AIQSELTKELQDLKDRhqeeIREHLERIDSLESKLQYLSKTATET 275
                 444566666666665411113456677777777777666666655 PP

  == domain 4  score: 59.3 bits;  conditional E-value: 1.1e-19
  TMF_DNA_bd   2 slekklkeKDeqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlkeae 74 
                 s e kl+eKDe+Ia LmeEG+kLs++e+kl++t kkLr+ + e+ek++ +lk + +k  ++ e l++rl++ e
  CCE28298.1 287 SPEQKLAEKDEKIALLMEEGQKLSANEHKLRTTTKKLRALLGENEKQLVDLKTRRDKAISDAEALRARLDGSE 359
                 66889***************************************************************99865 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.17
  TMF_DNA_bd  43 kelekeikelkkkleklekeleeleerlkea 73 
                 +e+e  ++e ++  ++l ke+++l+++ +++
  CCE28298.1 359 EEAERRQEEANRVAASLRKEIDSLKRENSKK 389
                 6899999999999999******999987776 PP

  == domain 6  score: -8.5 bits;  conditional E-value: 7
  TMF_DNA_bd  24 LskkelklnntikkLrkknkelekei 49 
                 L k   ++++++k L + n+ l  e 
  CCE28298.1 415 LNKALAAERQKQKALEEANSALSAEK 440
                 33444444444444444444444444 PP

  == domain 7  score: 0.3 bits;  conditional E-value: 0.28
  TMF_DNA_bd  24 LskkelklnntikkLrkknkelekeikelkkkleklekeleeleerl 70 
                 L+k+ ++     +++rkk++++   +++ +++l +++  l++ +++l
  CCE28298.1 537 LEKERDEAQRRESEMRKKARDAAVRLRNVEDELHDVQPALTSTRQEL 583
                 55555555555567777777777777777777777777777777766 PP

  == domain 8  score: -3.3 bits;  conditional E-value: 3.6
  TMF_DNA_bd  20 EGekLskkelklnntikkLrkknkelekeikelk.....kklekleke 62 
                 E++  +++  kl ++ k+  + ++e+ +e+++lk     k + ++e+e
  CCE28298.1 582 ELTTCRDEMAKLQASYKSCEASLAEAREELDKLKhgvseKAKHEEEEE 629
                 666666667777788888888888888888888866644333333333 PP

  == domain 9  score: 2.5 bits;  conditional E-value: 0.059
  TMF_DNA_bd  17 LmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlk 71 
                  meE ++ ++    l+n + +L++  + + + + e ++ +e+l  ++e  +++++
  CCE28298.1 838 QMEETKAAASRVPNLENEVASLDARYQTTLEMLGEKSELVEELRADVEDVKAMYR 892
                 6888888889999999999999999999999999999999999998888887765 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1  11.8         3   7.7e+03      32     100 ..      81     149 ..      76     166 .. 0.72
   2 ?   -0.2  13.2      0.39     1e+03      50     139 ..     177     272 ..     157     278 .. 0.68
   3 ?   -1.5  23.7      0.99   2.5e+03      29     180 ..     256     399 ..     255     406 .. 0.75
   4 ?   -5.5  15.4         7   1.8e+04     106     177 ..     414     486 ..     408     494 .. 0.81
   5 ?    4.7  21.3     0.012        31      72     157 ..     530     615 ..     484     655 .. 0.53
   6 !   21.0   2.7   1.2e-07   0.00032      69     165 ..     797     889 ..     756     900 .] 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3
       ATG16  32 saleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgel 100
                 s+ ++ n +l+++ a+a + k+s++sak++++++s+++s+++a+ +s eq++a +++e  ++ + ++++
  CCE28298.1  81 SSRNRANDRLQARLAQALAGKASAASAKTSRTTSSPRSSTDQASRPSIEQQRADTNNETVAAKQDNAHS 149
                 555667777777777777755555566666666666667788888899999998888888887777655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.39
       ATG16  50 s......sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrlle.lneelqkleeklkedeerlaeleaeraaletkl 139
                 +      +++++  ++e e +++   +++++ +q +++++++l e+ + ++ ++   ++ l++ l++  ++ +e+++e  er+++le++ + l++  
  CCE28298.1 177 ArptapqKPNPDIATTEAENENR-AIEQDEHVSQGTDEARLSLSEQNSSVLAANDAIQSELTKeLQDLKDRHQEEIREHLERIDSLESKLQYLSKTA 272
                 12122223333333333333333.3566778889999999999999999999999999999751555556678899999999999999999887765 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.99
       ATG16  29 drtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlae 127
                 +r+++le++ + l+k a+++       k+a +++      + + ++k+++ ++k+a l ee ++l     +l +  ++l + l + e++l   ++r ++
  CCE28298.1 256 ERIDSLESKLQYLSKTATETA------KTAVSSAP-----SGSPEQKLAEKDEKIALLMEEGQKLSANEHKLRTTTKKLRALLGENEKQLVDLKTRRDK 343
                 566666665555522222211......22222222.....2445789999************************9999999999999999999999999 PP

       ATG16 128 leaeraaletklkdreeelrekeklvq...dlqDElsaLqlqlnqaEeklrklekE 180
                 + ++ +al+ +l+  ee+ r +e+++     l+ E+++L+ + ++ +++ r+le E
  CCE28298.1 344 AISDAEALRARLDGSEEAERRQEEANRvaaSLRKEIDSLKRENSKKDDAHRRLELE 399
                 9999999999998777776655555544449*********************9977 PP

  == domain 4  score: -5.5 bits;  conditional E-value: 7
       ATG16 106 elneelqkleeklkedeerlaeleaeraaletklkdreeelrek.eklvqdlqDElsaLqlqlnqaEeklrkl 177
                 +ln++l++ ++k k+ ee+  +l+ae+ a  ++ ++ e e +ek e++++  +   + L+ +l  +E kl+ +
  CCE28298.1 414 ALNKALAAERQKQKALEEANSALSAEKDAAAEQARQDEIEWHEKlERAHERARKTENELKAELLAVEGKLEAM 486
                 5788999999999999999999999999988888888888887657888888888888888888888888754 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.012
       ATG16  72 qsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlq 157
                   ak++ le+++ + +   +e+ k+  + a rl+++++el++ +  l++ +++l   ++e a+l+  +k+ e+ l+e ++ +++l+
  CCE28298.1 530 LIAKSTGLEKERDEAQRRESEMRKKARDAAVRLRNVEDELHDVQPALTSTRQELTTCRDEMAKLQASYKSCEASLAEAREELDKLK 615
                 22344444444444555555555555555555555555555555555555555555555555555555555555555544444444 PP

  == domain 6  score: 21.0 bits;  conditional E-value: 1.2e-07
       ATG16  69 nskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLql 165
                  ++ sa i  le++ ++ +ee+a +  +r e  + l++l+++++    ++k+ ++r+ +le+e+a+l  +++   e l ek +lv++l+ +++  + 
  CCE28298.1 797 VERMSAAIRRLEAEKVTAKEEMARVCGQRDEARTDLVALMKQME----ETKAAASRVPNLENEVASLDARYQTTLEMLGEKSELVEELRADVEDVKA 889
                 5678999*******************************998885....688999***********************************98877665 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.3    0.0092        24      25      85 ..     218     278 ..     213     285 .. 0.79
   2 ?    3.1   0.7     0.034        87      30      90 ..     317     382 ..     306     388 .. 0.54
   3 ?    5.8   0.0    0.0052        13      47     125 ..     537     621 ..     492     634 .. 0.57
   4 ?    1.0   0.0      0.16   4.1e+02      48      88 ..     826     868 ..     791     896 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0092
  Baculo_PEP_C  25 irlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrn 85 
                   +  qn+++la+  ++  ++ ++L++l+++ ++ + e  +r+d+l ++L+   ++ ++t ++
    CCE28298.1 218 LSEQNSSVLAANDAIQSELTKELQDLKDRHQEEIREHLERIDSLESKLQYLSKTATETAKT 278
                   6679999999999999999999999999999988888888888888887766666666555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.034
  Baculo_PEP_C  30 vqilaqlatlldaietqLnalsedlksllaeldt...rld..tlltnLtdalnalqdtlrneLtnl 90 
                    +++ +l +ll + e+qL +l+++  +++++ ++   rld  + +++ ++  n+++ +lr+e+++l
    CCE28298.1 317 RTTTKKLRALLGENEKQLVDLKTRRDKAISDAEAlraRLDgsEEAERRQEEANRVAASLRKEIDSL 382
                   334455666666666666666666666666555555545411334445555666666666666665 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0052
  Baculo_PEP_C  47 Lnalsedlksllaeldt.......rldtlltnLtdalnalq...dtlrneLtnlnsiltnLlssvtNinstLnnllqalnnldlgalsq 125
                   L++  ++ ++  +e+++       rl ++ ++L+d     q   ++ r+eLt+   +++ L++s    +++L+   + l+ l++g  ++
    CCE28298.1 537 LEKERDEAQRRESEMRKkardaavRLRNVEDELHDV----QpalTSTRQELTTCRDEMAKLQASYKSCEASLAEAREELDKLKHGVSEK 621
                   333334444444444443332222444444444444....4555588999999999999999999988888888777777777776554 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.16
  Baculo_PEP_C  48 nalsedlksllaeldt..rldtlltnLtdalnalqdtlrneLt 88 
                   ++  +dl +l++++++  + ++ + nL++ +++l    ++ L+
    CCE28298.1 826 DEARTDLVALMKQMEEtkAAASRVPNLENEVASLDARYQTTLE 868
                   4445555555555544334444555555555555533333222 PP

>> Holin_BhlA  BhlA holin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.4       3.3   8.5e+03      37      55 ..     247     265 ..     233     271 .. 0.46
   2 ?   10.0   0.0   0.00025      0.65      40      69 ..     859     888 ..     839     889 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.3
  Holin_BhlA  37 qeerekkyqeiikkltekf 55 
                  +e + +  e i+ l  k+
  CCE28298.1 247 HQEEIREHLERIDSLESKL 265
                 3333333333344443333 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00025
  Holin_BhlA  40 rekkyqeiikkltekfeiveeikkdvdeik 69 
                    +yq  ++ l ek e+vee++ dv+++k
  CCE28298.1 859 LDARYQTTLEMLGEKSELVEELRADVEDVK 888
                 5679***********************998 PP

>> CRR7  Protein CHLORORESPIRATORY REDUCTION 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.9   0.00015      0.39      26      67 ..     233     274 ..     225     281 .. 0.93
   2 ?   -2.3   0.2       2.4   6.2e+03      43      62 ..     308     327 ..     289     354 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHH-TTTS-HHHHH---HHHHHHHHHHH--- CS
        CRR7  26 aeellekLkelLekeqdelprdlaklesleeqaqyLldtace 67 
                 ++el++ L++l +++q+e+ + l++++sle+++qyL +ta e
  CCE28298.1 233 QSELTKELQDLKDRHQEEIREHLERIDSLESKLQYLSKTATE 274
                 5799******9999*************************988 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.4
                 TS-HHHHH---HHHHHHHHH CS
        CRR7  43 elprdlaklesleeqaqyLl 62 
                 +l+++ +kl++++++++ Ll
  CCE28298.1 308 KLSANEHKLRTTTKKLRALL 327
                 44444444444444444333 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   1.2    0.0082        21      44      87 ..     234     277 ..     226     288 .. 0.83
   2 ?   -1.0   0.2      0.66   1.7e+03      70      98 ..     360     388 ..     319     398 .. 0.74
   3 ?    2.4   0.3     0.058   1.5e+02      48      85 ..     456     493 ..     453     532 .. 0.80
   4 ?    9.1   0.4   0.00049       1.3      55     120 ..     549     614 ..     535     617 .. 0.83
   5 ?    7.1   1.0    0.0021       5.5      47     106 ..     836     894 ..     796     900 .] 0.73

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0082
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkldeqkeiskeike 87 
                 ++++k+l+++++  ++  r+  +rid++++kl+  +++++e+++
  CCE28298.1 234 SELTKELQDLKDRHQEEIREHLERIDSLESKLQYLSKTATETAK 277
                 579999****9999999888889**********99998888765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.66
     DUF1664  70 rvdkkldeqkeiskeikeevtevredlse 98 
                 + +++++e +++++++++e+++++++ s+
  CCE28298.1 360 EAERRQEEANRVAASLRKEIDSLKRENSK 388
                 45678888888888888888888877655 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.058
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeiskei 85 
                 ++le+  e  ++t ++L++++  v+ kl+++  +++e 
  CCE28298.1 456 EKLERAHERARKTENELKAELLAVEGKLEAMRVAAEEA 493
                 57999999999*****************9998776654 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00049
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleri 120
                 +++++  r+ + r+ +v+++l +++ + +++++e+t+ r+++++++   +s ++   +  ++l+++
  CCE28298.1 549 SEMRKKARDAAVRLRNVEDELHDVQPALTSTRQELTTCRDEMAKLQASYKSCEASLAEAREELDKL 614
                 567777788888999999999999999999999999999999999999999888877777666665 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.0021
     DUF1664  47 skqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesv 106
                  kq+e+ +++ a+   +L+++++++d++ + + e+  e +e v+e+r d+++++   +++
  CCE28298.1 836 MKQMEETKAA-ASRVPNLENEVASLDARYQTTLEMLGEKSELVEELRADVEDVKAMYREL 894
                 3444443333.2233468888888888888888888888888888888888887766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2786  (0.155391); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        63  (0.00351386); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 2.10u 0.40s 00:00:02.50 Elapsed: 00:00:00.65
# Mc/sec: 4198.14
//
Query:       CCE28299.1  [L=1708]
Description: uncharacterized protein CPUR_01774 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3445  (0.192147); expected 358.6 (0.02)
Passed bias filter:                      915  (0.0510346); expected 358.6 (0.02)
Passed Vit filter:                       670  (0.0373696); expected 17.9 (0.001)
Passed Fwd filter:                       232  (0.0129399); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 8.90u 0.47s 00:00:09.37 Elapsed: 00:00:01.51
# Mc/sec: 3423.59
//
Query:       CCE28300.1  [L=740]
Description: related to calcineurin responsive zinc-finger protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-12   46.3  10.4      2e-07   31.1   1.0    3.7  3  zf-H2C2_2        Zinc-finger double domain
    1.8e-11   43.8  18.8    3.7e-06   27.1   2.4    4.1  4  zf-C2H2          Zinc finger, C2H2 type
    1.1e-07   32.0  15.5    0.00042   20.9   1.5    4.2  3  zf-C2H2_4        C2H2-type zinc finger
    8.1e-07   28.9   5.5    0.00033   20.6   0.3    3.6  3  zf-C2H2_6        C2H2-type zinc finger
    7.5e-05   22.9  10.4      0.091   13.1   0.1    4.1  4  zf-C2H2_jaz      Zinc-finger double-stranded RNA-binding
    0.00025   21.3   3.1      0.014   15.8   0.2    3.7  3  zf-met           Zinc-finger of C2H2 type
     0.0087   16.6   0.9      0.022   15.3   0.9    1.6  1  Zn_ribbon_recom  Recombinase zinc beta ribbon domain
  ------ inclusion threshold ------
       0.15   11.9   7.7       0.43   10.4   0.7    3.3  3  zf-C2H2_11       zinc-finger C2H2-type
          1    9.4   4.2         13    5.9   0.4    2.4  2  zf-BED           BED zinc finger
        1.5    9.4   3.5         15    6.2   0.3    2.5  2  zf-C2HE          C2HE / C2H2 / C2HC zinc-binding finger
        1.5    9.1   4.0         25    5.2   2.8    2.3  2  LIM              LIM domain


Domain annotation for each model (and alignments):
>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.4   0.00077       1.3      14      26 .]     513     527 ..     508     527 .. 0.80
   2 !   31.1   1.0   1.2e-10     2e-07       1      25 [.     530     554 ..     530     555 .. 0.96
   3 !   10.1   0.1   0.00055       0.9       3      18 ..     560     575 ..     558     592 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00077
   zf-H2C2_2  14 p..yeCplCdkaFkt 26 
                 p  ++C lC+k+F++
  CCE28300.1 513 PatFQCTLCPKRFTR 527
                 3449*********85 PP

  == domain 2  score: 31.1 bits;  conditional E-value: 1.2e-10
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 nLr H+r+Ht e+p+ C+ C+kaF+
  CCE28300.1 530 NLRSHLRTHTDERPFVCSHCGKAFA 554
                 8***********************8 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00055
   zf-H2C2_2   3 rrHirkHtgekpyeCp 18 
                 +rH   H gek++ C+
  CCE28300.1 560 KRHESLHSGEKKFACK 575
                 7**************7 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       3.8   6.3e+03      13      21 ..     246     254 ..     245     255 .. 0.80
   2 !   27.1   2.4   2.3e-09   3.7e-06       1      23 []     516     538 ..     516     538 .. 0.99
   3 !   17.1   3.6   3.4e-06    0.0056       1      23 []     544     566 ..     544     566 .. 0.97
   4 !    7.6   0.0    0.0035       5.7       5      21 ..     585     601 ..     572     602 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.8
                 HHHHHHHHH CS
     zf-C2H2  13 ksnLkrHir 21 
                 + +++rH+r
  CCE28300.1 246 QPQFQRHRR 254
                 6789***99 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 2.3e-09
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++C+ C+k+F+r +nL++H+rtH
  CCE28300.1 516 FQCTLCPKRFTRAYNLRSHLRTH 538
                 89********************9 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 3.4e-06
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++C++Cgk F r+++ krH + H
  CCE28300.1 544 FVCSHCGKAFARQHDRKRHESLH 566
                 89*****************9998 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0035
                 TTTEEESSHHHHHHHHH CS
     zf-C2H2   5 dCgksFkrksnLkrHir 21 
                 +C+++F r + L rH r
  CCE28300.1 585 GCDRRFARADALGRHFR 601
                 7**************87 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   1.5   2.6e-07   0.00042       1      23 [.     516     538 ..     516     539 .. 0.97
   2 !   10.7   3.3   0.00049      0.79       1      23 [.     544     566 ..     544     567 .. 0.91
   3 ?    5.7   0.0      0.02        32       6      22 ..     586     602 ..     584     603 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.6e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f+C++C+k+F++ ++L++Hl+th
  CCE28300.1 516 FQCTLCPKRFTRAYNLRSHLRTH 538
                 89********************9 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00049
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f C++Cgk F ++++ +rH   h
  CCE28300.1 544 FVCSHCGKAFARQHDRKRHESLH 566
                 89*************899*9888 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.02
   zf-C2H2_4   6 CgksFsskkaLlrHlkt 22 
                 C+++F + +aL rH+++
  CCE28300.1 586 CDRRFARADALGRHFRS 602
                 **************986 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.3     2e-07   0.00033       2      26 ..     516     540 ..     515     541 .. 0.93
   2 ?    4.8   0.4     0.018        30       2      14 ..     544     556 ..     544     558 .. 0.89
   3 ?    4.0   0.0     0.031        51       7      20 ..     586     599 ..     586     602 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2e-07
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksHrk 26 
                 + C+ C k+F   ++L+ H+++H +
  CCE28300.1 516 FQCTLCPKRFTRAYNLRSHLRTHTD 540
                 99*********************65 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.018
   zf-C2H2_6   2 heCsvCsksFpsl 14 
                 ++Cs C+k F  +
  CCE28300.1 544 FVCSHCGKAFARQ 556
                 89********875 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.031
   zf-C2H2_6   7 CsksFpslqaLggH 20 
                 C+++F   +aLg H
  CCE28300.1 586 CDRRFARADALGRH 599
                 ************99 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         6   9.9e+03      16      23 ..     248     255 ..     248     255 .. 0.89
   2 !   13.1   0.1   5.6e-05     0.091       2      24 ..     516     538 ..     515     538 .. 0.93
   3 !    9.5   0.3   0.00075       1.2       2      22 ..     544     564 ..     543     564 .. 0.93
   4 ?    5.3   0.0     0.016        25       7      23 ..     586     602 ..     586     604 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6
                  HHHCCTTS CS
  zf-C2H2_jaz  16 aldnHlkS 23 
                  +++ H +S
   CCE28300.1 248 QFQRHRRS 255
                  79***998 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 5.6e-05
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  f C lC K F  +++l+ Hl+++
   CCE28300.1 516 FQCTLCPKRFTRAYNLRSHLRTH 538
                  56******************986 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00075
                  CBBTTTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlk 22 
                  f C +C K F  +++ + H++
   CCE28300.1 544 FVCSHCGKAFARQHDRKRHES 564
                  88*****************85 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.016
                  TTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkS 23 
                  Cd+ F  + al  H++S
   CCE28300.1 586 CDRRFARADALGRHFRS 602
                  ****************9 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   8.4e-06     0.014       1      22 [.     516     537 ..     516     539 .. 0.93
   2 ?    1.6   0.4      0.25   4.1e+02       1      20 [.     544     563 ..     544     564 .. 0.89
   3 ?    1.4   0.0      0.29   4.7e+02       6      22 ..     586     602 ..     586     603 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.4e-06
      zf-met   1 fyCelCnvtfnsesqlksHlqG 22 
                 f+C lC ++f+   +l+sHl+ 
  CCE28300.1 516 FQCTLCPKRFTRAYNLRSHLRT 537
                 89******************96 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.25
      zf-met   1 fyCelCnvtfnsesqlksHl 20 
                 f C+ C + f  + + k H 
  CCE28300.1 544 FVCSHCGKAFARQHDRKRHE 563
                 78*********999999885 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.29
      zf-met   6 CnvtfnsesqlksHlqG 22 
                 C+++f    +l  H+++
  CCE28300.1 586 CDRRFARADALGRHFRS 602
                 **************998 PP

>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.9   1.3e-05     0.022       7      52 ..     545     599 ..     544     603 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
  Zn_ribbon_recom   7 rCgeCGspmtrrkrkgkr.......hyYrCstyrrkgk..kCsnhsireekleea 52 
                      +C +CG+++ r++ +++          + C++  + g   +C+ +  r+++l ++
       CCE28300.1 545 VCSHCGKAFARQHDRKRHeslhsgeKKFACKGELKAGGqwGCDRRFARADALGRH 599
                      8**********6655444567777799*****988886577********999765 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.7   0.00026      0.43       3      25 ..     514     536 ..     513     538 .. 0.94
   2 ?    3.8   0.2      0.03        48       7      23 ..     546     562 ..     540     564 .. 0.85
   3 ?   -0.9   0.0      0.89   1.4e+03      10      24 ..     586     600 ..     585     601 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
  zf-C2H2_11   3 stcqCleCGlcftSqlsLsRHlf 25 
                 +t+qC++C   ft +  L+ Hl+
  CCE28300.1 514 ATFQCTLCPKRFTRAYNLRSHLR 536
                 69*******************97 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.03
  zf-C2H2_11   7 CleCGlcftSqlsLsRH 23 
                 C +CG  f+ q   +RH
  CCE28300.1 546 CSHCGKAFARQHDRKRH 562
                 *********99877777 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.89
  zf-C2H2_11  10 CGlcftSqlsLsRHl 24 
                 C + f+ + +L RH 
  CCE28300.1 586 CDRRFARADALGRHF 600
                 9999**99******7 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.5     0.024        40      18      41 ..     517     537 ..     510     539 .. 0.84
   2 ?    5.9   0.4    0.0082        13      17      29 ..     544     556 ..     537     564 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.024
                 EETTTTEE----SSTHHHHHHHHH CS
      zf-BED  18 vCryCgkilsrgggttnLkrHLrr 41 
                 +C  C k ++r     nL++HLr+
  CCE28300.1 517 QCTLCPKRFTRA---YNLRSHLRT 537
                 7**********8...788888875 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0082
                 -EETTTTEE---- CS
      zf-BED  17 avCryCgkilsrg 29 
                  vC +Cgk ++r 
  CCE28300.1 544 FVCSHCGKAFARQ 556
                 69*******9997 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.3    0.0089        15      37      63 ..     515     540 ..     506     541 .. 0.88
   2 ?    4.1   0.2     0.039        64      36      49 ..     542     555 ..     539     562 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0089
     zf-C2HE  37 pLkCtrCganfgnkfpkLKeHLeeefe 63 
                  ++Ct C  + +    +L++HL ++ +
  CCE28300.1 515 TFQCTLCP-KRFTRAYNLRSHLRTHTD 540
                 589*****.8888889*********87 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.039
     zf-C2HE  36 tpLkCtrCganfgn 49 
                 +p+ C +Cg+ f +
  CCE28300.1 542 RPFVCSHCGKAFAR 555
                 79*******88765 PP

>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   2.8     0.015        25      23      53 ..     512     549 ..     507     549 .. 0.69
   2 ?    3.2   4.1     0.064     1e+02       1      40 [.     518     557 ..     518     577 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.015
                 ETTTSB-TTT-SB-CTT.......CEEETTE......EEEHHH CS
         LIM  23 HeeCFtCsdCqkeLkegs......fyekdgk......lyCkkd 53 
                 H++ F+C+ C k++++ +            +      ++C+++
  CCE28300.1 512 HPATFQCTLCPKRFTRAYnlrshlR-----ThtderpFVCSHC 549
                 9*************99876442221.....1223344777776 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.064
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT. CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegs 40 
                 C  C k++++++ +++ l  +  e+ F+Cs+C+k ++++ 
  CCE28300.1 518 CTLCPKRFTRAYNLRSHLRTHTDERPFVCSHCGKAFARQH 557
                 88888888888888877777777889*********98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 5416.61
//
Query:       CCE28301.1  [L=267]
Description: probable alternative oxidase precursor,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-91  304.2   0.2    5.3e-91  304.0   0.2    1.1  1  AOX       Alternative oxidase


Domain annotation for each model (and alignments):
>> AOX  Alternative oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.0   0.2   2.9e-95   5.3e-91       4     215 .]       2     232 ..       1     232 [. 0.98

  Alignments for each domain:
  == domain 1  score: 304.0 bits;  conditional E-value: 2.9e-95
         AOX   4 eelesvklahrepktlsDkvaiglvkllRwlaDlvtre................kkleltekkylhRaifLetvAgvpgmvaavlrhLrslrlmkrdkg 86 
                 ee+ +v+ +hr+p+++sD++a+++v+++R+++D++t+                 +++ lte ++l R++fLe+vAgvpgmv+++lrhL slr+mkrd+g
  CCE28301.1   2 EEMLAVEPVHRKPRNMSDWAAWKIVRFARFWMDKATGMgrsqqvdkkhpttavvAEKPLTEAQWLVRFVFLESVAGVPGMVGGMLRHLSSLRRMKRDNG 100
                 5788899***********************************************9999***************************************** PP

         AOX  87 wirtlleeaenermHllvllklaeptlleRllvllaqgvffniflllYllsPrvahrlvgyleEeavvtYtqliedideGkleewek..vkaPeiAlqY 183
                 wi+tllee++nermHll+++k++ep+++++l++++aqgvffn+++++Yll Pr+ hr+vgyleEeav+tYt++i++i++G+l++w++  +++P+iA+ Y
  CCE28301.1 101 WIETLLEESYNERMHLLTFMKMCEPGWFMKLMIIGAQGVFFNALFVAYLLHPRIVHRFVGYLEEEAVHTYTRAIREIEHGHLPKWSDpnFQIPDIAIGY 199
                 *************************************************************************************976699******** PP

         AOX 184 wkl.qeeatlrdvilliRaDEakhrdvnhtlan 215
                 w++ + ++t+rd+il+iRaDEa hr vnhtl+n
  CCE28301.1 200 WNMpEGHRTMRDLILYIRADEAGHRGVNHTLGN 232
                 ***8889***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2044.16
//
Query:       CCE28302.1  [L=639]
Description: probable arginine-tRNA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-101  339.8   2.2   2.1e-101  339.4   2.2    1.1  1  tRNA-synt_1d     tRNA synthetases class I (R)
    4.2e-30  104.4   0.2      1e-29  103.1   0.2    1.7  1  DALR_1           DALR anticodon binding domain
    1.2e-05   25.8   0.0    3.6e-05   24.2   0.0    1.9  1  Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
  ------ inclusion threshold ------
      0.046   13.8   0.1       0.32   11.1   0.2    2.3  2  Spectrin_like    Spectrin like domain
       0.43   10.3   8.2       0.15   11.7   3.3    2.5  3  RGS-like         Regulator of G protein signalling-like domai


Domain annotation for each model (and alignments):
>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.4   2.2  5.8e-105  2.1e-101      17     348 ..     155     507 ..     147     508 .. 0.96

  Alignments for each domain:
  == domain 1  score: 339.4 bits;  conditional E-value: 5.8e-105
                   SST-EEEEE----BTTS--BHHHHHHHHHHHHHHHHHHHCT-EEEEEE--B-SSTCHHHHHHHHHHHTTTTTTS-----SCCCHHHHHHHHCCCSHC CS
  tRNA-synt_1d  17 rekkkvvvdfssPniakemhvGhLrstiiGdavsrlleflGydvirlnhvGDWGtqfGlLiaylekkqdekllqeqelqdLeafykeakkdydeeei 113
                   ++kk+++v+fssPn+ak++h+GhLrstiiG ++++l+e+ G+dv+r+n++GDWG+q+GlL+  +++++de++l+++++++L+++y++++ ++  e +
    CCE28302.1 155 SDKKRIIVEFSSPNVAKPFHAGHLRSTIIGSFIANLYEASGWDVVRMNYLGDWGKQYGLLALAYQRNGDEEALKKNPIDHLFKLYVQINAEMSAEKE 251
                   689***********************************************************************************99877654433 PP

                   ...................CCHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHCT---EC.--CC.CCCCCHHHHHHHHHCTT-EEECTTC CS
  tRNA-synt_1d 114 ...................faerarnyvvkLqsgdedirklwkllvditrtelqklydrldvtlie.rGes.lykeslneivkelkkkglvkesdGa 189
                                      + e+ar+y++++ ++ded+   wk+  d++  +++++y rl++   e  Ges + +e + +i +e+k+k++ +e+ Ga
    CCE28302.1 252 eieaqkkegkdvsaleansLDEQARQYFKRMTDRDEDVLAQWKRFRDLSIARYKETYSRLNIHFDEfSGESqVAEEFMAKIAEEMKEKNISREDKGA 348
                   35**************************************************************9999***************************** PP

                   EEEEECCC.....TSSCCE.ECC-TTS-B-HHHHHHHHHHHHHHTT--SEEEEEEECCCHHHHHHHHHHHHCTTSSTTTSEEEEEEE--EE-TTSSB CS
  tRNA-synt_1d 190 lvvfldef.....gkrlgv.vvqksDGgylytttDiaaakerkeelkadkvlyvidsrqslhlqqiflilkkigyvpeskdlehanfGmvlgkdkkk 280
                   l+v+ ++      gkrlg  v++k+DG+ ly+t+Di     r+e+ k+d+++yv+ s+q+lhlqq+f i+  +gy+  +k+ +h+nfG+vlg     
    CCE28302.1 349 LLVDFTQLlpgkaGKRLGTtVLRKRDGTALYLTRDICELLGRHEKYKFDHMIYVVASQQDLHLQQLFQIIELLGYNDIAKKCQHINFGLVLG----- 440
                   *******9**********97889****************************************************888************76..... PP

                   SBCSSSTC-BHHHHHHHHHHHHHHHHCCCCCCTS-CCCCHCHHHHHHHHHHHHCCCCTS-TTS-EE-- CS
  tRNA-synt_1d 281 fktrkGetvkLadlLdealeralqlikeknkdkvlqadelekvaeavgvgaikyaDlsknrindyifd 348
                   ++tr+G + +L+d+L +  ++  +  + kn++k  q+ ++ + a+++g++++  +D+  +rin+y f+
    CCE28302.1 441 MSTRRGTVKFLDDILKDCADHMHE-TMKKNEEKYAQVHDPVQTADTLGISSVMAQDMGGKRINNYTFN 507
                   9*******************9888.88899999**********************************8 PP

>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.2   2.9e-33     1e-29       1     119 []     522     639 .]     522     639 .] 0.99

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 2.9e-33
                 HHHHHHHHHHHHHHTTCTTCCCCHCCHCCS-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTHHH.HHHHHHHHH CS
      DALR_1   1 vqyahaRiksilrkaeeegekleeealalleeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeelaaaRLaLvka 99 
                 +qyahaR++si r+ e ++e+l++++l+ll+e++  ++++ l q+p+vl++++++lep ++++yl+ La+++++ Y++ +v+++e e++ +aR+aL +a
  CCE28302.1 522 LQYAHARLCSIRRRVELSDEELDTAQLSLLTEDHAVNIVRMLVQWPDVLQNTLKTLEPATVLTYLFRLAHAISSSYDHLKVVGSEPETM-KARMALYDA 619
                 6************************************************************************************9988.********* PP

                 HHHHHHHHHHHTT----S-- CS
      DALR_1 100 vrqvLangLdlLGieapekm 119
                 +r +L+ng+++LG++++e+m
  CCE28302.1 620 ARTTLSNGMRILGLTPLERM 639
                 *******************9 PP

>> Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0     1e-08   3.6e-05       3      84 ..      39     118 ..      37     119 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1e-08
                      HHHHHHHHHHHHHSS-HHHHGGG-E-.SSGGG-SEEEEGGGG--TT-..-HHHHHHHHHHT---TTT.EEEEEEETT.EEEEE CS
  Arg_tRNA_synt_N   3 lkeaiaealkkaagadleeeeiviekpknpkfGDyatnvamqlakklkknPreiAeeiaekleksei.iekvevagpGFiNff 84 
                      +++++++ l+ka+g d++++ +v+  +++ ++GD+ +    +  +  +++P  +A+e+a+k+++++  ++k   +g  F++f+
       CCE28302.1  39 YRAHLTDLLSKASGVDKSIIYPVVMWTQSLDKGDFVVA--VPALRIKGTKPDVLAQEWAAKFPEDDPlFKKPVLSGH-FMTFY 118
                      57889999*****99**********99********885..5999*********************999********9.99996 PP

>> Spectrin_like  Spectrin like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.85     3e+03      11      42 ..      12      45 ..      11      52 .. 0.70
   2 ?   11.1   0.2   8.9e-05      0.32      20      62 ..     295     337 ..     290     350 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.85
  Spectrin_like 11 ekirsltlamlktmkpeeyrqv..lknLelhyqd 42
                   +++++lt+a++ ++ p+ + ++  l+   +h+ d
     CCE28302.1 12 QRVKGLTIASVTQLYPNAHPEInpLDLYRAHLTD 45
                   68999******99999887665334444555555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8.9e-05
  Spectrin_like  20 mlktmkpeeyrqvlknLelhyqdFlrdSqeSelFteedrkqle 62 
                     ++ ++ + y+++ ++L++h+++F  +Sq +e F ++  ++++
     CCE28302.1 295 RFRDLSIARYKETYSRLNIHFDEFSGESQVAEEFMAKIAEEMK 337
                    688899999*************************987666665 PP

>> RGS-like  Regulator of G protein signalling-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.3   4.2e-05      0.15      40     171 ..     215     347 ..     211     355 .. 0.72
   2 ?   -0.8   0.0       0.3   1.1e+03     150     175 ..     452     477 ..     444     483 .. 0.84
   3 ?   -2.8   0.0       1.3   4.5e+03      25      39 ..     573     587 ..     569     599 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
                 HHHHTTS-TTHH.HHHHHH.HHHHHTSTT-TT-----HHHHHHH.......HHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGGTTTG CS
    RGS-like  40 tdlykqgtsKet.rrvale.ifstFleknallrvpvpeslalel....ekrrkelikeeilrrviqevrerakedinkqledfrqKrslGlgllegeld 132
                 + +y+  +  e+ ++  ++ +f+ +++ na++ ++ +e  a +         + ++ +e +r+++ ++ +r + d+   l +++  r l ++  ++  +
  CCE28302.1 215 ALAYQRNGDEEAlKKNPIDhLFKLYVQINAEMSAEKEEIEAQKKegkdVSALEANSLDEQARQYFKRMTDRDE-DV---LAQWKRFRDLSIARYKETYS 309
                 5667664444432444444389999999999999876655554444432223445667889999999998864.44...777888889999******** PP

                 GGG..--S-HH.HHHHHHHHHHHHHHHHH...HTS-HHHH CS
    RGS-like 133 kldqevkkDrv.kErrvaEqllskleeiletsstkeeeks 171
                 +l+  ++ D+   E +vaE++++k+ e++++++   e+k 
  CCE28302.1 310 RLN--IHFDEFsGESQVAEEFMAKIAEEMKEKNISREDKG 347
                 **9..77777769************999988777777775 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.3
                 HHHHHHHHHHH...HTS-HHHHHHHH CS
    RGS-like 150 Eqllskleeiletsstkeeeksaalq 175
                 + +l+ + ++++++ +k+eek a + 
  CCE28302.1 452 DDILKDCADHMHETMKKNEEKYAQVH 477
                 679999**************998876 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.3
                 HHHHS--HHHHHHHH CS
    RGS-like  25 vlsqfdPsallfyli 39 
                  l   +P+++l yl+
  CCE28302.1 573 TLKTLEPATVLTYLF 587
                 567789*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1023  (0.0570584); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4511.41
//
Query:       CCE28303.1  [L=275]
Description: uncharacterized protein CPUR_01778 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-72  243.1  32.9    4.8e-72  242.8  32.9    1.0  1  eIF3_subunit     Translation initiation factor eIF3 subunit
  ------ inclusion threshold ------
          2    7.9  16.6       0.29   10.7  10.4    2.0  2  DUF2201_N        Putative metallopeptidase domain
        2.3    8.7   7.1        0.2   12.1   0.3    2.1  2  DUF3472          Domain of unknown function (DUF3472)


Domain annotation for each model (and alignments):
>> eIF3_subunit  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.8  32.9     8e-76   4.8e-72       3     242 .]       6     275 .]       3     275 .] 0.92

  Alignments for each domain:
  == domain 1  score: 242.8 bits;  conditional E-value: 8e-76
  eIF3_subunit   3 dWDdedfepssvakkpavaa....kWddEdededvkdswdaeeeeeeekekakkaaeakak..aakakkkkskkqkiaekeerrkaeeeeaeeeeel 93 
                   +WDde++e+s+++++p++++    +++dE++d+dv++swda+e++e+e+ek++ka+eak+k  a++a++kksk+ ++ae++  +++++e++e ee++
    CCE28303.1   6 QWDDENEESSTPPSTPPITTtrrrQFEDEEDDSDVLESWDAAEDSEVEREKERKAKEAKEKalAEAAANKKSKAARVAEHQ--AARAREREEGEESD 100
                   8******999999888888899***********************************************************..44455567899999 PP

  eIF3_subunit  94 eeedeaarkerlrkaeeesDlknaadlFGgv.....................attketdlssldlfnpktkedFeelrkalaekltklekksphYss 169
                   eee+ea+r+erlr++e+e+Dl++a+dlFG+v                     ++ k+ +++sl+lfnp+tk++Fe +r+++a+++++++ k++hY  
    CCE28303.1 101 EEETEAERRERLRRTEQEADLRHAEDLFGDVgissgrkantigaavavdsndPS-KTVNIASLPLFNPQTKKQFELMRTTMAPIISSNA-KKAHYGL 195
                   9*************************************************9666.**********************************.788**** PP

  eIF3_subunit 170 fleelirdlakslssedikkvassltvlaneKqkeeKaaekggKkkkkakaktslk......adteayd.dddddyDDFM 242
                   flee+++dlak+lss+++kkvas+lt l+neK+keeKa+ekggKk+k+ak+ktsl        d+ +yd dd    DDFM
    CCE28303.1 196 FLEEFAKDLAKELSSDQMKKVASALTRLSNEKMKEEKASEKGGKKSKAAKTKTSLVtsrantTDVATYDeDDGFGDDDFM 275
                   ******************************************************66555444556666633333349**9 PP

>> DUF2201_N  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  10.4   4.9e-05      0.29     137     207 ..      52     120 ..      15     133 .. 0.75
   2 ?    1.0   0.4     0.045   2.7e+02     131     168 ..     217     255 ..     170     272 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.9e-05
   DUF2201_N 137 adrdgekkgdgekaakkkrsdspesarvgalatgfeadleesekgksseeeeseearewrealqraleagk 207
                  +r++e+k++ +k+++  +    +++++  +a+ + a   e e+g++s+eee+e+  e+re+l r ++ + 
  CCE28303.1  52 VEREKERKAKEAKEKALAEAAANKKSKAARVAEHQAARAREREEGEESDEEETEA--ERRERLRRTEQEAD 120
                 357777777777777777777799*************************998884..68888888777764 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.045
   DUF2201_N 131 ytal.......ggadrdgekkgdgekaakkkrsdspesarvgala 168
                 + al        + ++  ek g+  kaak      ++ + v ++a
  CCE28303.1 217 ASALtrlsnekMKEEKASEKGGKKSKAAK------TKTSLVTSRA 255
                 22223222211111111222222222222......3333333333 PP

>> DUF3472  Domain of unknown function (DUF3472)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.9       0.3   1.8e+03     108     158 ..      41      96 ..      23     106 .. 0.72
   2 ?   12.1   0.3   3.3e-05       0.2      78     154 ..     165     243 ..     140     258 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.3
     DUF3472 108 lEnFa.....pesgnlsrkarfgnqwalekegkwreltkakftadatarkkerldy 158
                 lE ++     + + +++rka+  ++ al ++  +++ + a+++  + ar++er + 
  CCE28303.1  41 LESWDaaedsEVEREKERKAKEAKEKALAEAAANKKSKAARVAEHQAARAREREEG 96 
                 66666554433445677888888888888888888888888888888888877665 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.3e-05
     DUF3472  78 fkdpetkewkliaslkrpktetllkslys..FlEnFapesgnlsrkarfgnqwalekegkwreltkakftadatarkke 154
                 f+ +++k+++l+ + + p  ++++k+++   FlE+Fa++ +++  + + ++  ++ ++ +++++++ k++ ++ +++k 
  CCE28303.1 165 FNPQTKKQFELMRTTMAPIISSNAKKAHYglFLEEFAKDLAKELSSDQMKKVASALTRLSNEKMKEEKASEKGGKKSKA 243
                 5556679999******************99*******999999999999999999988899999999998887766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2568  (0.143232); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 1829.93
//
Query:       CCE28304.1  [L=530]
Description: uncharacterized protein CPUR_01779 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     2e-230  766.0   0.0   2.2e-230  765.8   0.0    1.0  1  MDM31_MDM32  Yeast mitochondrial distribution and morphology 
  ------ inclusion threshold ------
      0.021   14.5   0.1      0.037   13.7   0.1    1.3  1  TraH_2       TraH_2


Domain annotation for each model (and alignments):
>> MDM31_MDM32  Yeast mitochondrial distribution and morphology (MDM) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  765.8   0.0  2.5e-234  2.2e-230      27     525 .]       1     525 [.       1     525 [. 0.93

  Alignments for each domain:
  == domain 1  score: 765.8 bits;  conditional E-value: 2.5e-234
  MDM31_MDM32  27 vrpfnaddisafvswlllgnvlwillgtTtfvslvillintvfaq..................etlakkigdyltkstgvkvvFEsaivpkwkdgkis 106
                  +rp+nad+++afvsw++lg+++w+l+gtTtf+s++i++intvfaq                  etlak++gdylt+s+gv+vvFEsaivp+wk+g+i 
   CCE28304.1   1 MRPWNADEWGAFVSWFMLGHIVWVLVGTTTFFSILIFSINTVFAQgkssyhlswrlitnesciETLAKWVGDYLTQSAGVNVVFESAIVPNWKNGVIA 98 
                  79************************************************************************************************ PP

  MDM31_MDM32 107 fknvfvsrrPkqkkskvekgsskeaaakaaaaaaaeekeseeeeeeeeddgnytqfdltidtvdvtLsfakwlngkGllkdvevkGvrGvvdrthvkw 204
                  f+nvfvsrrP+q+ s+v+kgss++aa + aaa +++++      ++eeddgnytqfd++i +v+vtLsf++w+ngkGllkdvev+GvrGvvdrt+v+w
   CCE28304.1  99 FRNVFVSRRPGQVVSTVSKGSSEAAAVA-AAAGRHTQA---LGFANEEDDGNYTQFDVKIANVNVTLSFVNWWNGKGLLKDVEVSGVRGVVDRTSVRW 192
                  **********************999864.444433233...3345678************************************************** PP

  MDM31_MDM32 205 keeeldpksyrhehqpgdfelesfkledvlvtvyqpegfrpfkvsifscdlpqLRkqwlfyDflsAnnvsGsfdnslFtiHkrqslekeeeekeeea. 301
                  ++ + dp sy+h+hqpgdfe+esfkled+l+t++qp++frpf vsi+sc+lp+LRkqwlfyDflsA+++sGsfd+slFtiH+rq ++  +++++ +  
   CCE28304.1 193 PAGPIDPLSYKHQHQPGDFEIESFKLEDLLLTIHQPNEFRPFAVSIYSCELPRLRKQWLFYDFLSASHMSGSFDGSLFTIHPRQIHGVVSSHEQGALl 290
                  **99*********************************************************************************8777766666557 PP

  MDM31_MDM32 302 .....skwkklsrlridglnidhlnrgvegpfsWiteGkvdivaDimlPededelslskvlseildkleeevtskkaleeeeks........eelake 386
                       ++wkk+srlridgl+idhlnr+vegpf+Wi+eG+vdivaD+m+P+++d+  lskv+s+++d+lee+v  ++++   +          +++ + 
   CCE28304.1 291 gvsepNAWKKFSRLRIDGLKIDHLNREVEGPFGWIYEGNVDIVADVMFPAETDD-GLSKVMSDFYDQLEEAVIMNRNRFLPN-VgessplvaQSAGHL 386
                  788899*********************************************999.*****************9999765443.247788876444445 PP

  MDM31_MDM32 387 aksaeeseeekeeeeekeeeeeekyvvvdlklklndvkAavPlftkdlsyvnnaliRpivayiNskrtyipikcrvvkklsdfdgswtvydsgLmddl 484
                  +++  + + + +++++ + +e+++y+++d+++++ndv+AavPlft+d+syvn+al+RpivayiN+k+tyipi+cr+vk+lsdfdgswtv+d+gLm+d+
   CCE28304.1 387 SEAGGQVDISVTDQTSGSGDEDRRYLIMDMRIHMNDVRAAVPLFTRDISYVNQALVRPIVAYINAKQTYIPISCRIVKRLSDFDGSWTVFDCGLMSDT 484
                  5555566666677777888999**************************************************************************** PP

  MDM31_MDM32 485 saevYealakdvadeearkrrlkkvglWslqlavqalllgl 525
                  s e+Y+a+akdv+d+++r+rr+kkvg+W+l+lav+al++g+
   CCE28304.1 485 SVETYDAFAKDVEDQQTRVRRFKKVGFWTLSLAVHALFMGM 525
                  ***************************************98 PP

>> TraH_2  TraH_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.1e-06     0.037     112     183 ..      66     137 ..      60     165 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.1e-06
      TraH_2 112 vakwyGnp.keddvlpqifedave.awktGefeGvsvfqaadpGkvvateealgaededvkekdsaklktadad 183
                 +akw G+  +++  +  +fe a++  wk G     +vf +  pG+vv+t ++ ++e+ +v  ++  ++++    
  CCE28304.1  66 LAKWVGDYlTQSAGVNVVFESAIVpNWKNGVIAFRNVFVSRRPGQVVSTVSKGSSEAAAVAAAAGRHTQA--LG 137
                 68999986256677999*****8747*********************99988888877765555443332..22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3936.12
//
Query:       CCE28305.1  [L=256]
Description: uncharacterized protein CPUR_01780 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-05   24.5   0.0    3.9e-05   23.7   0.0    1.3  1  KH_8      Krr1 KH1 domain
     0.0067   16.2   0.5      0.015   15.1   0.5    1.5  1  KH_1      KH domain


Domain annotation for each model (and alignments):
>> KH_8  Krr1 KH1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   4.3e-09   3.9e-05       7      78 ..      84     156 ..      80     159 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 4.3e-09
        KH_8   7 fpkyrekylkeveekikkll.eekklklevdlkerslkvsTtekTrDPyiilkardlikLisrgvpleeakkv 78 
                  p +r + lk+ +++i   l e+ kl++++++k ++++++T  +T +   + k++d++k  + g +++ a  +
  CCE28305.1  84 VPPHRMTPLKQAWTQIYPPLvEHLKLQCRMNIKRKTVELRTSPHTAESGALQKGEDFVKAFTLGFDVDDAIAL 156
                 589*************98775889***********************************99999999988766 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.5   1.6e-06     0.015       8      64 ..     181     229 ..     178     231 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-06
                 GGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEESHHHHHHHHHHH CS
        KH_1   8 sslvgriIGkgGsnIkeIreetgakIkvpksedegsderevtisGspeavekAkeli 64 
                 s+ +gri Gk G++   I++ + ++I++  +       + ++i G  ++++ A+e i
  CCE28305.1 181 SRTIGRIAGKDGKTKFAIENASRTRIVLA-D-------SKIHILGGFKNIHMARESI 229
                 5679****************99*****65.3.......47*****9999****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2190.63
//
Query:       CCE28306.1  [L=438]
Description: probable enolase (2-phosphoglycerate dehydratase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.5e-153  508.4   0.0   7.1e-153  508.1   0.0    1.1  1  Enolase_C  Enolase, C-terminal TIM barrel domain
    1.5e-57  193.4   0.4      3e-57  192.4   0.1    1.7  2  Enolase_N  Enolase, N-terminal domain
    1.7e-05   24.5   0.0    3.5e-05   23.5   0.0    1.5  1  MR_MLE_C   Enolase C-terminal domain-like
     0.0047   16.1   0.2       0.14   11.3   0.1    2.7  3  MAAL_C     Methylaspartate ammonia-lyase C-terminus


Domain annotation for each model (and alignments):
>> Enolase_C  Enolase, C-terminal TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  508.1   0.0  1.6e-156  7.1e-153       2     295 ..     144     435 ..     143     436 .. 0.99

  Alignments for each domain:
  == domain 1  score: 508.1 bits;  conditional E-value: 1.6e-156
                 -EE-EE-EEEEE-GGGSSSS--SSEEEEE-TT-SSHHHHHHHHHHHHHHHHHHHHHCC.GGGG-B-TTS-B----SSHHHHHHHHHHHHHHCT-TCTBE CS
   Enolase_C   2 lvlPvPalnvinGGshagnklalqefmilPvgassfkealrlGaevyhklksvlkkkygksatnvGdeGGfaPnlqsnkealdliveaiekaGykgkvk 100
                 +vlPvP++nv+nGGshag++la+qefmi+P++a++f+ea+r+Gaevy+klks++kkkyg+sa+nvGdeGG+aP++q+++eal+li++aie+aGy+gk++
  CCE28306.1 144 YVLPVPFMNVLNGGSHAGGRLAFQEFMIVPSDAPTFSEAMRQGAEVYQKLKSLAKKKYGQSAGNVGDEGGVAPDIQTADEALELITDAIEQAGYTGKMN 242
                 79************************************************************************************************* PP

                 EEEE--GGGCEETCTTEEECTTTTTT..GGCEEEHHHHHHHHHHHHHHS-EEEEES-S-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT CS
   Enolase_C 101 ialdvassefykekdkkydldfkeeesdkskkltseqladlykelvkkyPivsiedpldeddweawkklteelgdkvqivGddltvtnpkrlkeaiekk 199
                 ia+dvassefyk + kkydldfk++esd+ k+lt+e+la ly  l+kkyPivsiedp++eddweaw+++ ++ +  +qivGddltvtnp r+k+aie k
  CCE28306.1 243 IAMDVASSEFYKTDAKKYDLDFKNPESDPTKWLTYEELAALYSGLCKKYPIVSIEDPFAEDDWEAWSYFYKSEN--IQIVGDDLTVTNPLRIKKAIELK 339
                 **********************************************************************9988..*********************** PP

                 --SEEEE-HHHH-SHHHHHHHHHHHHHTT-EEEEE--SC--S--HHHHHHHHCT-SEEE---S-SHHHHHHHHHHHHHHHHHGCC-EE-GGGCTTT CS
   Enolase_C 200 aanalllkvnqiGsltesleavklakeagygvvvshrsGetedttiadlavglsaGqiktGaparserlakynqllrieeelgekakyaGkkvrkk 295
                 a+nalllkvnqiG+ltes++a+k++++ g+gv+vshrsGeted+tiad++vg++aG iktGap+rserlak+nq+lrieeelg+ka+yaG+++rk+
  CCE28306.1 340 ACNALLLKVNQIGTLTESIQAAKDSYADGWGVMVSHRSGETEDVTIADISVGIRAGEIKTGAPCRSERLAKLNQILRIEEELGDKAIYAGANFRKA 435
                 *********************************************************************************************986 PP

>> Enolase_N  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.4   0.1   6.6e-61     3e-57       1     131 []       3     134 ..       3     134 .. 0.97
   2 ?   -3.1   0.0       1.9   8.5e+03      51      66 ..     422     437 ..     416     437 .. 0.77

  Alignments for each domain:
  == domain 1  score: 192.4 bits;  conditional E-value: 6.6e-61
                 EEEEEEEEEE-TTS-EEEEEEEEETTC-EEEEE--B-BSSSSSS-B----SSTTSGGGT--HHHHHHHHHTHHHHHT..TSBTT-HHHHHHHHHHHH-S CS
   Enolase_N   1 IkkvkareildSrGnpTvevevttedgalgraavpsGaStgekealelrDgdkkrylgkgvekavenvnekiapali..gldvtdqeeiDkllielDgt 97 
                 I+kv+ar ++dSrGnpTvev+v+t +g l ra+vpsGaStg++ea+elrDgdk++++gkgv+kave+vn++i pali  ++dv+dq++iD++l +lDgt
  CCE28306.1   3 ITKVHARSVYDSRGNPTVEVDVVTGTG-LHRAIVPSGASTGQHEACELRDGDKTKWGGKGVSKAVEHVNTTIGPALIkeNIDVKDQTKIDSFLNSLDGT 100
                 89**********************988.67**********************************************966699***************** PP

                 TT-TTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH CS
   Enolase_N  98 enksklGaNailavSlAvakaaAkakelplyryl 131
                 enk+klGaNail+vSlAvaka+A++k++ply ++
  CCE28306.1 101 ENKTKLGANAILGVSLAVAKAGAAEKGVPLYAHI 134
                 *******************************997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.9
                 SSTTSGGGT--HHHHH CS
   Enolase_N  51 gdkkrylgkgvekave 66 
                 gdk+ y g  ++kav+
  CCE28306.1 422 GDKAIYAGANFRKAVN 437
                 5679999999999985 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   7.7e-09   3.5e-05      58     156 ..     276     377 ..     187     401 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 7.7e-09
                 BHHHHHHHHHHH.GGGTESEEESSSSTTTHHHHHHHHHHHH.SSEEEESTTSSS.HHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHH..HHHHTT-E CS
    MR_MLE_C  58 dlatAirvarel.eeldllwlEEPvppeddleglaelrara.sipiaagEslys.radfrelleagavdivqpdvsrvgGitearkvaa..laeafgvp 151
                 + ++   +   l +++ +  +E+P+   dd+e+      ++ +i+i+++    + + ++++++e +a+ ++ ++v+++g +te+++ a+   a+ +gv 
  CCE28306.1 276 TYEELAALYSGLcKKYPIVSIEDPFAE-DDWEAWSYFY-KSeNIQIVGDDLTVTnPLRIKKAIELKACNALLLKVNQIGTLTESIQAAKdsYADGWGVM 372
                 55555555555536699999******9.78********.7779*****9965444*********************************73355555555 PP

                 EEEBS CS
    MR_MLE_C 152 vapHs 156
                 v++ s
  CCE28306.1 373 VSHRS 377
                 55555 PP

>> MAAL_C  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.048   2.2e+02     192     218 ..      94     120 ..      75     127 .. 0.78
   2 ?   -1.0   0.0      0.18   7.9e+02     101     141 ..     255     295 ..     248     305 .. 0.85
   3 !   11.3   0.1   3.1e-05      0.14     136     214 ..     313     392 ..     310     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.048
      MAAL_C 192 gaylGGscnetdvsarvsvhvalatrp 218
                    l G+ n t+ +a+++  v+la+  
  CCE28306.1  94 LNSLDGTENKTKLGANAILGVSLAVAK 120
                 556789*****************9865 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.18
      MAAL_C 101 eaaapyklliegPldagskeeqierlaelreklkekgikve 141
                 + a+ y+l + +P   ++k+   e+la+l + l +k   v+
  CCE28306.1 255 TDAKKYDLDFKNPESDPTKWLTYEELAALYSGLCKKYPIVS 295
                 67999***********************9999988766555 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 3.1e-05
      MAAL_C 136 kgikvelvaDeWcntle.direfvdaeaadlvqiktPDlGginntieavlyckekgvgaylGGscnetdvsarvsvhval 214
                 k+ ++++v D+ + t    i++ ++ +a++++ +k+  +G+++++i+a   +   g g+++   + et+  + + + v++
  CCE28306.1 313 KSENIQIVGDDLTVTNPlRIKKAIELKACNALLLKVNQIGTLTESIQAAKDSYADGWGVMVSHRSGETEDVTIADISVGI 392
                 56799*****998775438********************************99999999999999999977666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3127.11
//
Query:       CCE28307.1  [L=1181]
Description: probable mitotic checkpoint serine/threonine protein kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-43  146.4   0.1    7.3e-43  145.5   0.1    1.5  1  Mad3_BUB1_I   Mad3/BUB1 homology region 1
    1.2e-08   34.6   0.0    9.4e-08   31.7   0.0    2.0  2  Pkinase       Protein kinase domain
    2.8e-07   30.6   0.0    8.5e-07   29.0   0.0    1.9  2  Mad3_BUB1_II  Mad3/BUB1 homology region 2
     0.0001   21.7   0.0     0.0004   19.8   0.0    1.8  1  Pkinase_Tyr   Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Mad3_BUB1_I  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5   0.1   1.6e-46   7.3e-43       3     124 .]      60     184 ..      58     184 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.5 bits;  conditional E-value: 1.6e-46
                  HHHHHHHHHTG....-THHHHHHHHHHHHHH-TT..-T.TT-HHHHHHHHHHHTTTSGGGTT-HHHHHHHHHHHT.TSS-HHHHHHHHHHHTTSTTBH CS
  Mad3_BUB1_I   3 rqefeeeleeaeegdDpLelwlryikwieesypq..sskesgllellerclkkfkdderYknDpRylklwlkyad.lveepreifkflaskkiGtkla 97 
                  r+efe+e+++++e dDpLe+++ryi w+ ++yp+  ++ +s+l+ ller++k+f +  +YknDpRyl++w++y++ ++++pre++ fl +++iG+ la
   CCE28307.1  60 RAEFEAEIQNISESDDPLEVFDRYIGWTLDAYPSaqATPQSQLHLLLERATKAFITTAQYKNDPRYLRIWMHYIHlFSDSPRETYMFLSRHGIGEGLA 157
                  899********999********************99999************************************55688****************** PP

                  HHHHHHHHHHHHTT-HHHHHHHHHHH. CS
  Mad3_BUB1_I  98 lfYeewAellekkgrfkeAeevyelGi 124
                  lfYee+A++le +gr+++Aeevy+lGi
   CCE28307.1 158 LFYEEYAAWLEGAGRWTQAEEVYKLGI 184
                  **************************8 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.087   3.9e+02       1      21 [.     834     854 ..     834     859 .. 0.85
   2 !   31.7   0.0   2.1e-11   9.4e-08      69     197 ..     925    1086 ..     901    1125 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.087
                 EEEEEEEEEESSEEEEEEEET CS
     Pkinase   1 yekleklGeGsfGkVykavek 21 
                 y+ +++lG G+f+ Vy + ++
  CCE28307.1 834 YKMKRELGAGAFAPVYLVENT 854
                 67899***********99875 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 2.1e-11
                  E...SSEEEEEEE--TTEBHHHHHH.....HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.T...............TTE..... CS
     Pkinase   69 e...kdelylvleyveggeladlle.....rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.e...............kge..... 136 
                      ++e +l+l y ++g+l d+++      +g+++e+ a +++ ++++ +e lH k+i+H DlK +N  +  +                       
  CCE28307.1  925 LhlyQNEAFLFLPYHPHGTLLDVVNffraePSGAMDEQLAMFFTIEMMRTVEALHTKNILHGDLKADNCVLRlDttsssqplttswsadG-Sggwas 1020
                  345578999***************9999988899***********************************999546777777777776650.155566 PP

                  ..EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH...TTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase  137 ..lKitDFGlakelessskltsfvgtseYlAPEvl...keneyskkvDvWslGvilyelltgkppf 197 
                    l ++DFG    ++  ++  +f+++ +  A       ++++ + ++D+++l+ ++ +ll+g+ + 
  CCE28307.1 1021 rgLFLIDFGRGIDMKAFEPDVEFIADWKTSAQDCAemrEGRPWTWQIDYYGLAGVIHCLLFGRYIE 1086
                  6699*****999999988755555555555554444448899999999999999999999998765 PP

>> Mad3_BUB1_II  Mad3/BUB1 homology region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.1   9.4e+03       1       7 [.     262     268 ..     262     297 .. 0.78
   2 !   29.0   0.0   1.9e-10   8.5e-07       1      66 [.     322     395 ..     322     397 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.1
                   XXXXXXX CS
  Mad3_BUB1_II   1 KlpiFkD 7  
                   K++iF+D
    CCE28307.1 262 KIAIFSD 268
                   99***** PP

  == domain 2  score: 29.0 bits;  conditional E-value: 1.9e-10
                   XXXXXXX......XXXX---..--EEE--TTS--EEESS-HHHHSTTSSS...---HHHHHHHHTT-SSXXXXX CS
  Mad3_BUB1_II   1 KlpiFkD...esnskgrsdp..vyklieikgkkpEkidcNfeLlYpedee...EfsieeiLAisRglykkkrnk 66 
                   Kl++FkD   +++++    p   + ++++++ k+E i + +e +Yp+ +e   E+s+ee+ A +Rg+++++++ 
    CCE28307.1 322 KLAVFKDarlSQINNFVVVPskSQVTVHPQTGKKEYIFVDLEAIYPTPDEpgsELSFEEVIAARRGWLDQTWDD 395
                   99*****766333333333333678899*********************99******************99975 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   8.9e-08    0.0004       3     137 ..     836     996 ..     834    1001 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 8.9e-08
                  EEEEEEEESSEEEEEEEEET...TTTSSEEEEEEEEE....STTSSHHHHHHHHHHH.......HHHH....TS..-BTTB--EEEEEE...SSSSEE CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg...ekekkevkVavKtl....keeateeekeelleea.......kimk....kl..khpnivkllgvct...keepll 77 
                  ++++lG+Gaf+ V+  + ++   e+e++e + av +     + +++++e e+l  ea        im+    +l  +h+ + +l  +      +++ +
   CCE28307.1 836 MKRELGAGAFAPVYLVENTQpheEEETDEADGAVSMGrgmfDVGHRRSELEALKMEApptpwefYIMRlahsRLgpQHRAVASLSYAHElhlYQNEAF 933
                  67889999999998888877776666667777777651112457777777777666522222224664222233445777777766665666677899 PP

                  EEEE--TTEBHH...HHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr  78 ivteyvkgGdLl...kfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLls 137
                  + + y ++G+Ll   +f r++ + +++ +  + f++++ + +e L++k+++H dl a N++l+
   CCE28307.1 934 LFLPYHPHGTLLdvvNFFRAEPSGAMDEQLAMFFTIEMMRTVEALHTKNILHGDLKADNCVLR 996
                  *********77522278899989999999999999*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.39
# Mc/sec: 8980.54
//
Query:       CCE28308.1  [L=450]
Description: probable AP endonuclease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-35  121.1   0.1    5.8e-35  120.6   0.1    1.2  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   0.1   3.2e-39   5.8e-35       2     208 ..     123     343 ..     122     345 .. 0.93

  Alignments for each domain:
  == domain 1  score: 120.6 bits;  conditional E-value: 3.2e-39
                   HHHHHCT-SEEEEECCTCSHHHHC..HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS...HHHHHHHHHHHHHHHHHHTBSEEEEEBCC CS
  AP_endonuc_2   2 aaaaeaGfdgvElfgrdlvpvsel..sdeelrelrkaldelglriaslslftrfgypdederear...reesvdalkraielaaaLGapllvlhpGt 93 
                   + a+++G++++ lf+++++++++   sde+  ++ ++++ +g+  + + l+ +++ ++    +a+     ++   + + +++++aLG++l ++hpG 
    CCE28308.1 123 TNAKQIGANSFALFLKSQRKWTNPpiSDEAQLQFISNCKTHGYSASEHALPHGSYLVNLA--QADetkAVQAYTSFVDDLQRCEALGIRLYNFHPG- 216
                   689*****************************************6555555555555554..444447778889999*******************. PP

                   GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC..HHHHHHHHHHTTTT.EEEEEEHHHHHHH......TTTHHHHHHHHHG CS
  AP_endonuc_2  94 agagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd..eelarlldavdspn.vgvclDtgHllia......eedvddalralad 181
                     + +++++++a+ r+a+ ln++ + + +  v  +lE++ag+g+  g   e+l++++  v++++ vgvc+Dt+H+++a       e +++++ra+++
    CCE28308.1 217 --STGGEPRAAAIGRIAAQLNKAHEATSPSSVVTVLENMAGAGNVIGSswEDLRDIIALVEDKKrVGVCIDTCHAFAAghdlrtPEAFEETMRAFDE 311
                   ..******************************************9999************************************************* PP

                   G.....EEEEEE.EESSTTTTSSTTEESTTSS CS
  AP_endonuc_2 182 r.....ikhvHikDakgdlgagrdrhvpigeG 208
                         ++++H++D+k + +++rd h++ig+G
    CCE28308.1 312 IvgmeyLRAFHLNDSKAPFNSNRDLHANIGTG 343
                   ******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3302.99
//
Query:       CCE28309.1  [L=437]
Description: related to diacylglycerol acyltransferase type 2a [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-94  313.7   0.0    1.1e-93  313.4   0.0    1.1  1  DAGAT     Diacylglycerol acyltransferase
  ------ inclusion threshold ------
      0.056   13.2   0.0      0.092   12.5   0.0    1.3  1  Rer1      Rer1 family


Domain annotation for each model (and alignments):
>> DAGAT  Diacylglycerol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.4   0.0   1.3e-97   1.1e-93       5     290 ..     136     428 ..     132     435 .. 0.94

  Alignments for each domain:
  == domain 1  score: 313.4 bits;  conditional E-value: 1.3e-97
       DAGAT   5 ltklwlllvLyavwlly.didspkkggyrsnwvrrlavlkyfaeYfPvkLvktaeletdrnYliGyhPhgilsvgafvalatdatgvkekfpgirfnla 102
                 ++ +w +lv y+v l + +  ++ k +yrs+w+r l +++ fa YfP kL+kt +l+++r Y++GyhPhgi+s ga++a+at+a g+ ekfpgi   l 
  CCE28309.1 136 NPITWPILVPYLVHLSLsNASTDGKLSYRSEWLRSLPLWRLFAGYFPAKLHKTFDLPPNRKYIFGYHPHGIISHGAWCAFATNALGFVEKFPGITNSLL 234
                 6789*********99762578999*************************************************************************** PP

       DAGAT 103 tLagqfrtpfrreillllGlievsresieyvLdk.....eekGravvlvvGGaeealeahpgketltLkkrkGfvkialktGadLvPvysfGendvykq 196
                 tL ++fr+pf r+++l +G+  vsresi  +L+k     +++Grav +v+GGa+e+lea+pg+  l+L+ rkGf+k+al+ GadLvPv  fGend+y+q
  CCE28309.1 235 TLDSNFRVPFYRDWILAMGIRSVSRESIRNILSKggpdsNGQGRAVTIVIGGARESLEAQPGTLRLILQGRKGFIKVALRAGADLVPVIGFGENDLYDQ 333
                 ********************************7622222679********************************************************* PP

       DAGAT 197 venpkgsklrkvqeklkkvlglsppilyGrglfnsltlGllPfrkpittvvGkPievtkt..eePtkeeidelhakYveaLaeLfeehkekfgvsk 290
                 +++++   + k+q  + kv++++ p+l+Grgl n + +GllP+r+++++vvG+Pi++++t  e+P +e id++h+ Yv++++ L+  +ke+f+  k
  CCE28309.1 334 LSPKTHPLVHKIQMFFLKVFKFTIPALHGRGLLN-YDVGLLPYRRAVNIVVGRPIQIDETygEQPPQEVIDRYHELYVQEVERLYAAYKEQFSNGK 428
                 **********************************.88********************9875589***************************98554 PP

>> Rer1  Rer1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     1e-05     0.092      97     145 ..     106     152 ..      75     160 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1e-05
        Rer1  97 PfirrlpEfkfWlsatkailialvltffevfdvpVfwpiLlvyfivlfv 145
                 Pf rr++   +  ++++ ili+ +  +f++ + p+ wpiL+ y + l +
  CCE28309.1 106 PFKRRMQTAAVLFHCMSIILISSC-FWFSLAN-PITWPILVPYLVHLSL 152
                 9***************99999975.5666555.**********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3228.92
//
Query:       CCE28310.1  [L=608]
Description: related to zinc finger protein crol gamma [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-11   41.6  15.8    0.00014   22.1   1.7    3.6  3  zf-H2C2_2       Zinc-finger double domain
    2.6e-10   40.2  23.6     0.0011   19.2   3.1    3.5  3  zf-C2H2         Zinc finger, C2H2 type
    5.5e-07   29.9  19.0      0.019   15.7   6.1    3.6  3  zf-C2H2_4       C2H2-type zinc finger
  ------ inclusion threshold ------
      0.015   15.6  10.4      0.053   13.8   6.1    2.4  2  zf-Di19         Drought induced 19 protein (Di19), zinc-bindi
      0.018   14.9   2.9        4.2    7.3   0.2    3.3  3  zf-C2H2_9       C2H2 type zinc-finger (1 copy)
       0.05   13.7   5.9       0.11   12.6   1.5    2.6  2  Zn-ribbon_8     Zinc ribbon domain
       0.13   12.6   8.4        1.6    9.1   3.6    3.3  3  zf-C2H2_jaz     Zinc-finger double-stranded RNA-binding
       0.17   11.9  14.8       0.44   10.6   0.0    3.4  3  zf-C2H2_6       C2H2-type zinc finger
        0.2   12.1   0.5        0.4   11.1   0.0    1.7  1  ZapB            Cell division protein ZapB
       0.22   11.4   0.9       0.56   10.1   0.9    1.7  1  PKcGMP_CC       Coiled-coil N-terminus of cGMP-dependent prot
       0.22   11.4   5.4       0.29   11.0   0.2    2.7  2  Rad50_zn_hook   Rad50 zinc hook motif
       0.35   11.3   9.2         18    5.9   2.0    3.6  3  zf-met          Zinc-finger of C2H2 type
       0.64   10.1   5.4        6.3    6.9   5.5    2.2  2  DZR             Double zinc ribbon
       0.74    9.9   6.4        3.3    7.8   0.5    3.1  2  zf-CHCC         Zinc-finger domain
        0.9   10.0  14.2       0.77   10.2   0.6    3.1  3  zf-C2HE         C2HE / C2H2 / C2HC zinc-binding finger
        1.1    9.3   5.8       0.96    9.4   0.2    2.7  2  zf-LYAR         LYAR-type C2HC zinc finger
        1.3    9.0   9.8       0.56   10.2   3.6    2.4  2  Zn_ribbon_SprT  SprT-like zinc ribbon domain
        1.4    8.5   4.2        2.4    7.7   1.5    2.4  2  TF_Zn_Ribbon    TFIIB zinc-binding
        1.7    9.0   7.6         17    5.8   0.2    3.2  3  zinc_ribbon_9   zinc-ribbon
          3    7.9   6.6        1.8    8.6   3.9    2.1  2  zf-BED          BED zinc finger
        3.5    7.6   9.3        1.8    8.5   0.5    3.0  3  zf-FPG_IleRS    Zinc finger found in FPG and IleRS
        4.8    7.1   5.5        4.4    7.2   0.3    2.8  3  GAGA            GAGA factor


Domain annotation for each model (and alignments):
>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.8    0.0043       3.5      12      25 ..     247     260 ..     239     261 .. 0.84
   2 !   19.9   0.6   8.8e-07   0.00072       1      24 [.     264     287 ..     264     289 .. 0.93
   3 !   22.1   1.7   1.7e-07   0.00014       1      25 [.     292     316 ..     292     317 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0043
   zf-H2C2_2  12 ekpyeCplCdkaFk 25 
                  k+++Cp+C+  F+
  CCE28310.1 247 GKKHKCPYCNTDFT 260
                 578******98887 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 8.8e-07
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaF 24 
                 nL+ H+ +H +ekpy C  C  +F
  CCE28310.1 264 NLKSHLLTHSQEKPYVCTDCQMRF 287
                 89******************9988 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 1.7e-07
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 +L+rH + Htgekp+ Cp Cd +F+
  CCE28310.1 292 DLKRHGKLHTGEKPHICPRCDRKFA 316
                 69**********************8 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   8.1   3.9e-06    0.0032       1      23 []     250     272 ..     250     272 .. 0.98
   2 !   19.2   3.1   1.4e-06    0.0011       1      23 []     278     300 ..     278     300 .. 0.97
   3 !   11.5   0.1   0.00042      0.34       1      19 [.     306     324 ..     306     327 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.9e-06
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 +kCp+C+  F+r +nLk+H+ tH
  CCE28310.1 250 HKCPYCNTDFTRHHNLKSHLLTH 272
                 79********************9 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.4e-06
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y+C+dC ++F+r ++LkrH + H
  CCE28310.1 278 YVCTDCQMRFRRLHDLKRHGKLH 300
                 9******************9998 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00042
                 EEETTTTEEESSHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrH 19 
                 + Cp C+++F r + L rH
  CCE28310.1 306 HICPRCDRKFARGDALARH 324
                 67***************** PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   6.1   2.4e-05     0.019       1      23 [.     250     272 ..     250     273 .. 0.94
   2 !   10.6   1.4    0.0011       0.9       1      19 [.     278     296 ..     278     300 .. 0.94
   3 !   11.0   0.1   0.00078      0.64       1      21 [.     306     326 ..     306     328 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.4e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 +kCp+C++ F+++++L++Hl+th
  CCE28310.1 250 HKCPYCNTDFTRHHNLKSHLLTH 272
                 69********99999*******9 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0011
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrH 19 
                 + C+ C+ +F++ ++L+rH
  CCE28310.1 278 YVCTDCQMRFRRLHDLKRH 296
                 89***************** PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00078
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlk 21 
                 ++Cp C++ F + +aL rH k
  CCE28310.1 306 HICPRCDRKFARGDALARHSK 326
                 68*****************76 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   6.1   6.5e-05     0.053       3      48 ..     250     296 ..     248     302 .. 0.77
   2 ?    3.9   0.1     0.083        67      29      43 ..     303     317 ..     293     326 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.5e-05
     zf-Di19   3 ftCPyCgkelt.vkeLveHvedeHrveskevvCPvCaekvtk..dlvaH 48 
                  +CPyC+ ++t  ++L +H+ +  ++++k++vC  C+ + ++  dl +H
  CCE28310.1 250 HKCPYCNTDFTrHHNLKSHLLT--HSQEKPYVCTDCQMRFRRlhDLKRH 296
                 68******9662678*****99..5677899*****9887744488777 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.083
     zf-Di19  29 skevvCPvCaekvtk 43 
                 +k+++CP C  k ++
  CCE28310.1 303 EKPHICPRCDRKFAR 317
                 57899****988664 PP

>> zf-C2H2_9  C2H2 type zinc-finger (1 copy)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2    0.0052       4.2       3      26 ..     251     274 ..     249     279 .. 0.86
   2 ?    1.7   0.0      0.28   2.3e+02       3      20 ..     279     296 ..     277     304 .. 0.88
   3 ?    4.4   0.0     0.041        34       3      20 ..     307     324 ..     305     327 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0052
                 B-TTT--B-SSHHHHHHHHHHHTS CS
   zf-C2H2_9   3 lCPvCevkfnswkdlseHilsaas 26 
                  CP C+  f   ++l +H+l++ +
  CCE28310.1 251 KCPYCNTDFTRHHNLKSHLLTHSQ 274
                 5******************76654 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.28
                 B-TTT--B-SSHHHHHHH CS
   zf-C2H2_9   3 lCPvCevkfnswkdlseH 20 
                 +C  C+++f+ ++dl  H
  CCE28310.1 279 VCTDCQMRFRRLHDLKRH 296
                 6999***********999 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.041
                 B-TTT--B-SSHHHHHHH CS
   zf-C2H2_9   3 lCPvCevkfnswkdlseH 20 
                 +CP C  kf   + l+ H
  CCE28310.1 307 ICPRCDRKFARGDALARH 324
                 9*********99999999 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.23   1.9e+02      27      38 ..     250     261 ..     241     264 .. 0.73
   2 ?   12.6   1.5   0.00014      0.11       6      37 ..     278     316 ..     277     317 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.23
  Zn-ribbon_8  27 taCPeCgsevrr 38 
                   +CP C+ + +r
   CCE28310.1 250 HKCPYCNTDFTR 261
                  349999887776 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00014
  Zn-ribbon_8   6 YrCeeCghefevlqsis.dap.....lta.CPeCgsevr 37 
                  Y C++C+ +f +l+  +   +     +++ CP+C  +  
   CCE28310.1 278 YVCTDCQMRFRRLHDLKrHGKlhtgeKPHiCPRCDRKFA 316
                  9**********7776664444666668999****87655 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.6    0.0019       1.6       1      24 [.     249     272 ..     249     273 .. 0.92
   2 ?    1.8   0.1      0.38   3.1e+02       2      20 ..     278     296 ..     277     296 .. 0.91
   3 ?    2.2   0.0      0.29   2.4e+02       2      20 ..     306     324 ..     305     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0019
                  ECBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   1 qfYCvlCdKyFksenaldnHlkSK 24 
                  ++ C++C+  F  +++l+ Hl ++
   CCE28310.1 249 KHKCPYCNTDFTRHHNLKSHLLTH 272
                  689*****************9876 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.38
                  CBBTTTTBBBSSHHHHHCC CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnH 20 
                  + C  C+  F   ++l+ H
   CCE28310.1 278 YVCTDCQMRFRRLHDLKRH 296
                  77*********99999999 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.29
                  CBBTTTTBBBSSHHHHHCC CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnH 20 
                  + C+ Cd+ F    al  H
   CCE28310.1 306 HICPRCDRKFARGDALARH 324
                  78999*****987777777 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   5.5     0.049        40       2      26 ..     250     274 ..     249     275 .. 0.92
   2 ?    1.4   0.5      0.42   3.4e+02       2      20 ..     278     296 ..     278     302 .. 0.86
   3 ?   10.6   0.0   0.00054      0.44       2      22 ..     306     326 ..     306     326 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.049
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksHrk 26 
                 h+C++C+  F    +L  H+ +H +
  CCE28310.1 250 HKCPYCNTDFTRHHNLKSHLLTHSQ 274
                 9******************999976 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.42
   zf-C2H2_6   2 heCsvCsksFpslqaLggH 20 
                 ++C+ C  +F+ l +L  H
  CCE28310.1 278 YVCTDCQMRFRRLHDLKRH 296
                 89**********9999777 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00054
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkk 22 
                 h+C+ C++ F  ++aL  H k
  CCE28310.1 306 HICPRCDRKFARGDALARHSK 326
                 99**************99976 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0005       0.4       6      36 ..     571     601 ..     567     606 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0005
        ZapB   6 LeqLEskiqkaidtitlLqmeieeLkeenee 36 
                    LE ki+ + d++ +L  e++eLk+e e+
  CCE28310.1 571 IRLLEDKIKGLSDRVGSLDHEVAELKKELEA 601
                 5679***********************9876 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.9   0.00069      0.56       6      31 ..     574     599 ..     570     600 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00069
   PKcGMP_CC   6 KDERIRELEkrlaekdeEIqELrskL 31 
                  + +I+ L +r+   d E++EL+  L
  CCE28310.1 574 LEDKIKGLSDRVGSLDHEVAELKKEL 599
                 589********************987 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00035      0.29      18      43 ..     248     275 ..     245     276 .. 0.85
   2 ?    2.2   0.1      0.19   1.6e+02      21      31 ..     307     317 ..     300     322 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00035
                    -SEE-TTT--EE-HHH..HHHHHHHHHH CS
  Rad50_zn_hook  18 akgcCPlCgReldeeh..rseLikelqs 43 
                    +k++CP C  +++++h  +s L+ + q+
     CCE28310.1 248 KKHKCPYCNTDFTRHHnlKSHLLTHSQE 275
                    467*************999999887766 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.19
                    E-TTT--EE-H CS
  Rad50_zn_hook  21 cCPlCgRelde 31 
                     CP C+R++ +
     CCE28310.1 307 ICPRCDRKFAR 317
                    5*******965 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   2.0     0.023        18       3      20 ..     252     269 ..     247     272 .. 0.92
   2 ?    5.4   0.3     0.031        25       1      25 []     278     300 ..     278     300 .. 0.92
   3 ?    2.6   0.0      0.24   1.9e+02       2      19 ..     307     324 ..     306     327 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.023
      zf-met   3 CelCnvtfnsesqlksHl 20 
                 C+ Cn+ f+   +lksHl
  CCE28310.1 252 CPYCNTDFTRHHNLKSHL 269
                 888**************9 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.031
      zf-met   1 fyCelCnvtfnsesqlksHlqGKkH 25 
                 + C  C+++f    +lk H  GK H
  CCE28310.1 278 YVCTDCQMRFRRLHDLKRH--GKLH 300
                 78***************99..8877 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.24
      zf-met   2 yCelCnvtfnsesqlksH 19 
                  C+ C+++f    +l  H
  CCE28310.1 307 ICPRCDRKFARGDALARH 324
                 59*******988888777 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2       0.1        85      27      42 ..     244     263 ..     220     265 .. 0.73
   2 ?    6.9   5.5    0.0078       6.3       1      40 [.     252     317 ..     249     324 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.1
         DZR  27 a....edrCpsCgekvdpea 42 
                 a    +++Cp C+++ +  +
  CCE28310.1 244 AsggkKHKCPYCNTDFTRHH 263
                 14455788999988776655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0078
         DZR   1 CpqCgee..............lppdarfCseCgtklkavaa............edrCpsCgekvdp 40 
                 Cp C+++               +++  +C +C+ + ++  +            ++ Cp+C++k   
  CCE28310.1 252 CPYCNTDftrhhnlkshllthSQEKPYVCTDCQMRFRRLHDlkrhgklhtgekPHICPRCDRKFAR 317
                 88999988899999999886666667799999999875555888999999*99*******998655 PP

>> zf-CHCC  Zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.5     0.004       3.3      26      37 .]     248     259 ..     245     259 .. 0.87
   2 ?    4.4   0.1     0.049        40      25      37 .]     303     315 ..     298     315 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
                 SEEEETTTTEEE CS
     zf-CHCC  26 gpvdCgYCglrF 37 
                 + ++C+YC + F
  CCE28310.1 248 KKHKCPYCNTDF 259
                 789*****9988 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.049
                 TSEEEETTTTEEE CS
     zf-CHCC  25 kgpvdCgYCglrF 37 
                 ++p+ C+ C+++F
  CCE28310.1 303 EKPHICPRCDRKF 315
                 789********99 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.3      0.01       8.6      39      63 ..     251     274 ..     247     275 .. 0.89
   2 ?   10.2   0.6   0.00095      0.77      35      57 ..     275     296 ..     273     303 .. 0.89
   3 ?   -1.2   0.1       3.6     3e+03      37      48 ..     305     316 ..     302     318 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.01
     zf-C2HE  39 kCtrCganfgnkfpkLKeHLeeefe 63 
                 kC +C+ + +    +LK+HL ++ +
  CCE28310.1 251 KCPYCN-TDFTRHHNLKSHLLTHSQ 274
                 8*****.999999*********976 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00095
     zf-C2HE  35 ktpLkCtrCganfgnkfpkLKeH 57 
                 ++p  Ct C+   ++ + +LK+H
  CCE28310.1 275 EKPYVCTDCQ-MRFRRLHDLKRH 296
                 6899******.************ PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.6
     zf-C2HE  37 pLkCtrCganfg 48 
                 p +C rC+++f 
  CCE28310.1 305 PHICPRCDRKFA 316
                 668*****9886 PP

>> zf-LYAR  LYAR-type C2HC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.1      0.42   3.4e+02       6      18 ..     255     268 ..     251     269 .. 0.88
   2 ?    9.4   0.2    0.0012      0.96       1      18 [.     278     296 ..     278     298 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.42
     zf-LYAR   6 CsktFdg.deykaH 18 
                 C+++F++ ++ k+H
  CCE28310.1 255 CNTDFTRhHNLKSH 268
                 *******9999999 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0012
     zf-LYAR   1 fsCiDCsktFdg.deykaH 18 
                 + C DC+ +F++ ++ k H
  CCE28310.1 278 YVCTDCQMRFRRlHDLKRH 296
                 78**********9999999 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4      0.25     2e+02       5      16 ..     250     261 ..     243     263 .. 0.66
   2 ?   10.2   3.6   0.00069      0.56       5      31 ..     278     312 ..     277     316 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.25
  Zn_ribbon_SprT   5 YrCtgCgreyth 16 
                     ++C+ C + +t+
      CCE28310.1 250 HKCPYCNTDFTR 261
                     456666666655 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00069
  Zn_ribbon_SprT   5 YrCtgCgreythhlsirrhn........YrCrrCk 31 
                     Y+Ct+C+ ++ +    +rh         ++C+rC 
      CCE28310.1 278 YVCTDCQMRFRRLHDLKRHGklhtgekpHICPRCD 312
                     9******5555555555555**************5 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.5     0.003       2.4       2      25 ..     251     283 ..     250     283 .. 0.83
   2 ?    0.3   0.1      0.62     5e+02       2       9 ..     307     314 ..     306     320 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.003
                   EETTTTCEEC.........HEETSTTCEEESSS CS
  TF_Zn_Ribbon   2 kCPnCgstnl.........veDpergelvCtdC 25 
                   kCP+C+++++         ++   +  +vCtdC
    CCE28310.1 251 KCPYCNTDFTrhhnlkshlLTHSQEKPYVCTDC 283
                   9******99779999999666677777899999 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.62
                   EETTTTCE CS
  TF_Zn_Ribbon   2 kCPnCgst 9  
                   +CP C  +
    CCE28310.1 307 ICPRCDRK 314
                   69999876 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2     0.021        17      22      31 ..     251     259 ..     239     261 .. 0.78
   2 ?   -0.0   0.2       1.4   1.1e+03      17      31 ..     272     287 ..     268     287 .. 0.65
   3 ?    3.5   3.0      0.11        89      21      31 ..     296     315 ..     276     316 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.021
  zinc_ribbon_9  22 vlCPhCgggF 31 
                    + CP+C+ +F
     CCE28310.1 251 K-CPYCNTDF 259
                    4.******99 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.4
  zinc_ribbon_9  17 dedsdv.lCPhCgggF 31 
                    ++++ + +C +C+  F
     CCE28310.1 272 HSQEKPyVCTDCQMRF 287
                    44444455****9877 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.11
  zinc_ribbon_9  21 d........v.lCPhCgggF 31 
                             + +CP+C+  F
     CCE28310.1 296 HgklhtgekPhICPRCDRKF 315
                    344455554346*****988 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.9    0.0022       1.8      14      40 ..     247     270 ..     239     296 .. 0.85
   2 ?   -2.4   0.1       6.3   5.1e+03      13      29 ..     302     318 ..     291     325 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0022
                 SS--EETTTTEE----SSTHHHHHHHH CS
      zf-BED  14 eqkavCryCgkilsrgggttnLkrHLr 40 
                  +k +C yC+  ++r+   +nLk+HL 
  CCE28310.1 247 GKKHKCPYCNTDFTRH---HNLKSHLL 270
                 57889***********...99****94 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.3
                 GSS--EETTTTEE---- CS
      zf-BED  13 keqkavCryCgkilsrg 29 
                  e+  +C  C ++++rg
  CCE28310.1 302 GEKPHICPRCDRKFARG 318
                 56666888899999887 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       7.7   6.3e+03       3       9 ..     251     257 ..     250     261 .. 0.73
   2 ?    4.0   0.2     0.058        48      16      28 ..     272     284 ..     270     285 .. 0.92
   3 ?    8.5   0.5    0.0022       1.8      18      27 ..     302     311 ..     300     313 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.7
                   B-TTT-- CS
  zf-FPG_IleRS   3 pCpRCwr 9  
                   +Cp C +
    CCE28310.1 251 KCPYCNT 257
                   9999977 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.058
                   CTTEEEEE-TTTT CS
  zf-FPG_IleRS  16 qagrstyfCprCq 28 
                   ++++ +y+C  Cq
    CCE28310.1 272 HSQEKPYVCTDCQ 284
                   789*********9 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0022
                   TEEEEE-TTT CS
  zf-FPG_IleRS  18 grstyfCprC 27 
                   g+ +++CprC
    CCE28310.1 302 GEKPHICPRC 311
                   789******* PP

>> GAGA  GAGA factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.34   2.8e+02      27      44 ..     252     269 ..     246     273 .. 0.90
   2 ?    7.2   0.3    0.0054       4.4      22      52 ..     275     305 ..     271     307 .. 0.89
   3 ?   -0.3   0.1       1.2   9.6e+02      22      32 ..     303     313 ..     300     324 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.34
                 -TTT--EESSHHHHHHHH CS
        GAGA  27 CPiCqAviRqsRnLRRHL 44 
                 CP C        nL+ HL
  CCE28310.1 252 CPYCNTDFTRHHNLKSHL 269
                 *****************9 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0054
                 S--EE-TTT--EESSHHHHHHHHHHHTTTS- CS
        GAGA  22 EqPAtCPiCqAviRqsRnLRRHLELRHFkkP 52 
                 E+P  C  Cq   R   +L+RH  L   +kP
  CCE28310.1 275 EKPYVCTDCQMRFRRLHDLKRHGKLHTGEKP 305
                 99********************999888888 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.2
                 S--EE-TTT-- CS
        GAGA  22 EqPAtCPiCqA 32 
                 E+P  CP C  
  CCE28310.1 303 EKPHICPRCDR 313
                 99*******75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 3911.84
//
Query:       CCE28311.1  [L=49]
Description: uncharacterized protein CPUR_01786 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       153  (0.00853366); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.41
# Mc/sec: 362.88
//
Query:       CCE28312.1  [L=441]
Description: related to cell cycle regulation and aging protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-89  297.1   8.3    1.2e-88  296.8   8.3    1.1  1  SUN       Beta-glucosidase (SUN family)


Domain annotation for each model (and alignments):
>> SUN  Beta-glucosidase (SUN family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.8   8.3   6.5e-93   1.2e-88       2     244 ..     172     427 ..     171     428 .. 0.97

  Alignments for each domain:
  == domain 1  score: 296.8 bits;  conditional E-value: 6.5e-93
         SUN   2 gkikCsefpsdeglvavdalglgGwagiqd..................vkgesqeCkegsyCsyaCppGylktqwpsaqgatgssvGGLyCnkdGklek 82 
                 g+ikCsefps++g++++++lg+gG++g+q                   ++  +++C++g +Csy+CppGy+ktqwp+aqgat++s GGL Cn+dG+le+
  CCE28312.1 172 GQIKCSEFPSQYGAIPLNHLGFGGYSGLQFvpsfsmkaslsisniitgIT--GDKCSSGCLCSYSCPPGYQKTQWPKAQGATKQSAGGLHCNADGYLEL 268
                 89******************************************964444..557******************************************** PP

         SUN  83 tnkdskklCekgagkvkvknklsksvavCrTdyPGtEamlipteveagssaelavpdedtyykwkgkktsaqYYvNkaGvsvedaCvWgseskp..vGN 179
                 t+++  +lCe+gag+v++kn+l++ v+ CrTdyPGtE+m+ip+++++g++ e+++p ++ yy w+gk tsaqYY+Nk+G++++++C W+ +s+p  +GN
  CCE28312.1 269 TRPEVPTLCERGAGGVTIKNDLDEVVSACRTDYPGTENMVIPAVAQPGETIEVTNPVQNAYYIWDGKPTSAQYYINKKGLDAAQCCRWNCASDPlgCGN 367
                 *********************************************************************************************98899* PP

         SUN 180 waplvlGagkdedgktylsifqN.ptskeklnfnvkieaeegdsvsgkCkyesgklskgggadgCt 244
                 waplvlG+g++edg t+lsifqN pts++ l+fnv+i   +gd v++kC++++g++++g  ++gCt
  CCE28312.1 368 WAPLVLGVGQAEDGVTFLSIFQNlPTSTALLDFNVEI---TGD-VNSKCAFKNGQWIGG--SSGCT 427
                 *************************************...777.999**********55..99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3240.74
//
Query:       CCE28313.1  [L=499]
Description: probable histone deacetylase HosA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-77  259.7   0.0    5.9e-77  259.2   0.0    1.2  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.2   0.0   3.3e-81   5.9e-77       1     306 [.      85     385 ..      85     386 .. 0.92

  Alignments for each domain:
  == domain 1  score: 259.2 bits;  conditional E-value: 3.3e-81
                    SCCGTHHHHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   1 hpenpkRlsaileslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavg 96 
                    hp++p Rl  + +sl+ s+g++   ++   +++at eel  +H ++Yl++l ++  e  + +   e++++e + +l   d+p+++++++++++++g
     CCE28313.1  85 HPMKPWRLT-LSKSLIYSYGMS-FAMDNYISRAATYEELSSFHATDYLDFLGTVLPEPVPRD--LENQNQELQFNLGGSDCPLFDGLYDYCSMSAG 176
                    89999***9.999****99976.556678899*******************98887766665..3334444454588999**************** PP

                    HHHHHHHHHHTTSSSEEEETT.SS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-.CCTST CS
                    xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  Hist_deacetyl  97 avleavdavlsgsvkaafvlv.rPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHry.egify 190
                    ++l+a++++ s+  +++++++  ++ HHak+seasGFC++N+++iai +l +   ++rv+++D+DvHhG+G+eeaf s+++v+t+S+H+y +  f+
     CCE28313.1 177 GALDAARKITSN--QSDIAIAwGGGLHHAKRSEASGFCYINDIVIAILELLR--FYPRVLYIDIDVHHGDGVEEAFFSTDRVMTVSFHKYdPLVFF 268
                    **********99..999**999****************************99..467*********************************7799** PP

                    TSS--TT---SGGGTT....SEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-G. CS
                    xxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 191 Pgtgaledlgegkgkg....fnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkvkk 282
                    Pgtgal+d g +++++    ++ln+pl++g++de+y  +f++i+ + +e+f+P++i +++G+D+l+gd+lg++nl+v+g++ +++  ++      +
     CCE28313.1 269 PGTGALHDNGPRNEHNpgahHALNIPLNDGITDEQYGMLFNTIVGKTVEKFRPSAIALQCGADSLAGDRLGRFNLQVQGHGACVEFCKKQHL---P 361
                    **********8877777787******************************************************************999887...9 PP

                    EEEEE-S---HHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 283 vvllleGGYnlealaravtavlsa 306
                    ++l+++GGY+++++ara+t+ +s+
     CCE28313.1 362 LILFGGGGYTPRNVARAWTYETSI 385
                    *******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3688.94
//
Query:       CCE28314.1  [L=461]
Description: uncharacterized protein CPUR_01789 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-23   82.2   3.5      5e-23   81.6   3.5    1.3  1  ING         Inhibitor of growth proteins N-terminal histone-b
      7e-05   22.6   9.5    0.00013   21.8   9.5    1.4  1  PHD         PHD-finger
  ------ inclusion threshold ------
       0.06   13.5   0.1       0.13   12.4   0.1    1.5  1  DUF2552     Protein of unknown function (DUF2552)
      0.078   13.2   1.5       0.16   12.2   1.5    1.5  1  zf-HC5HC2H  PHD-like zinc-binding domain


Domain annotation for each model (and alignments):
>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   3.5   1.1e-26     5e-23       2     100 ..      26     129 ..      25     130 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 1.1e-26
                 HHHHHTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH.TS..S-HHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING   2 LedyldsvenLPlelqrnltelreiDakvqellkei...dskiekfl.kngslqknekeeels.riqeelkeaqelldeKiqlaqqaldlvdkhlrrLd 95 
                 L+d+++ v+nLP+e++ + +e+ ++D +++e+++ i   d ki+k++ +ngs+++n+ke+ l+ +i++++ +a +l++eKi+l+q++++++dkhlr +d
  CCE28314.1  26 LDDWVNRVQNLPEEIRFLHEEISDKDRQYNECIRMIddrDGKIQKWIkSNGSHEPNPKEDLLRaQIRDSFAKADKLAQEKIALTQKLQHVMDKHLRSID 124
                 99**********************************99999********************************************************** PP

                 HCTXX CS
         ING  96 qdlek 100
                  +l++
  CCE28314.1 125 IQLKL 129
                 99986 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   9.5   2.9e-08   0.00013       1      51 [.     407     453 ..     407     454 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.9e-08
                 SBTTTTSTTSTTSCEEEET..TTS.CEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   1 rCavCkkksdeeeelvqCd..gCk.rwfHqkClkppleseekpegewlCekCke 51 
                 +C +C++     +++v Cd  +C  +wfH +C++++ e    p+g w+C+ C+e
  CCE28314.1 407 YC-LCHN--VSYGDMVACDndNCPyEWFHWSCVGLKSE----PNGTWYCPVCTE 453
                 68.9999..679******7437*768**********77....7788******97 PP

>> DUF2552  Protein of unknown function (DUF2552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     3e-05      0.13      19      45 ..     420     446 ..     410     451 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
     DUF2552  19 sflnenhPysllhWsiaGvesekkdvW 45 
                 +  n+n Py  +hWs  G++se    W
  CCE28314.1 420 ACDNDNCPYEWFHWSCVGLKSEPNGTW 446
                 55689*****************99999 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.5   3.6e-05      0.16      27      66 ..     395     436 ..     380     457 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.6e-05
  zf-HC5HC2H  27 vekikkerkklkCylCkkk.vGaciqCskkkC.kkafHvtCa 66 
                  e+ +++  ++k +lC++  +G ++ C++ +C  + fH  C 
  CCE28314.1 395 AEDDEEAGDDKKYCLCHNVsYGDMVACDNDNCpYEWFHWSCV 436
                 455555555555567775449***********5579*****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       953  (0.0531541); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3102.57
//
Query:       CCE28315.1  [L=381]
Description: uncharacterized protein CPUR_01790 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.31   10.9   0.0    1.6  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.7e-05      0.31      21     118 ..     151     247 ..     135     304 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.7e-05
  Methyltransf_23  21 raggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae....kakkaqkdqfdeqeaaepqg..............kfdlIvlrevlehvp 96 
                       +++r++++GcGt   l++l+ +++++++     ++ + ++    +                                  +++I  + +    +
       CCE28315.1 151 SRSARIIELGCGTA--LPSLALFQWTMAMASEHQNQRGTYPqraiS------------------FiladynptvlqlvtLPNFILTWALHQQQH 224
                      5789*********9..999999999999887765555544443331..................022233333444455888888888888888 PP

  Methyltransf_23  97 dppellrqiatllkpg.Gyllls 118
                       p  +l+ +++  +pg G l+l+
       CCE28315.1 225 APIPALQEAFSQQEPGeGELELT 247
                      88888888888888877877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2820.81
//
Query:       CCE28316.1  [L=784]
Description: related to ATP-dependent RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-17   62.7   0.1    1.1e-16   61.0   0.0    2.0  2  HA2          Helicase associated domain (HA2)
    2.8e-12   47.0   0.0    6.7e-12   45.7   0.0    1.7  1  Helicase_C   Helicase conserved C-terminal domain
    5.1e-11   42.8   0.1    1.2e-10   41.6   0.1    1.6  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    1.3e-05   25.4   0.0    2.9e-05   24.4   0.0    1.5  1  AAA_22       AAA domain
    3.5e-05   23.7   0.0    8.8e-05   22.3   0.0    1.7  1  DEAD         DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.032   14.6   0.0       0.11   12.8   0.0    2.0  1  AAA_16       AAA ATPase domain
      0.056   13.2   0.0       0.11   12.2   0.0    1.5  1  AAA_30       AAA domain
      0.062   13.6   0.0       0.17   12.2   0.0    1.7  1  AAA_19       AAA domain
      0.075   12.8   0.0       0.19   11.5   0.0    1.6  1  AAA_29       P-loop containing region of AAA domain
      0.079   13.5   0.0        0.2   12.2   0.0    1.6  1  ABC_tran     ABC transporter


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       9.9   1.8e+04      15      42 ..     401     428 ..     395     434 .. 0.80
   2 !   61.0   0.0   6.3e-20   1.1e-16       1      78 [.     544     633 ..     544     670 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 9.9
         HA2  15 gnlTelGrkmaelPlsprlakmLlaaae 42 
                 g+l+  G++ a  P+s  + + +++a++
  CCE28316.1 401 GQLSMDGQREAFRPVSTPFTRKIVLATN 428
                 6778888888888999999999998854 PP

  == domain 2  score: 61.0 bits;  conditional E-value: 6.3e-20
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsv.eeifleeneeekeeeee...........e 78 
                 Al +L++lgAL+ +g++T+ G+ ma+lP++  l+ +Llaa + +++c+ e+i+i+++++  e+ifl+ ++ee +ee e           +
  CCE28316.1 544 ALVQLHYLGALQADGSITPAGEIMARLPVPAPLGAVLLAAKKPDFDCVLETIDIISCITSgEDIFLQVQSEEGQEELEvqrkeltrregD 633
                 7889*****************************************************99769*******999888876555444444330 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   3.7e-15   6.7e-12      12     110 ..     356     482 ..     345     483 .. 0.81

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 3.7e-15
                 HTTTTSEEEEEESSHHHHHH.HHHHHHHT........TSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSSS..SSH. CS
  Helicase_C  12 leeeggkilifvntidrlek.vklllekk........gikvavlhgelpqnereeileqfn.kgesdvLiatdvaerGidipkvnlVinfdlp..rnv. 97 
                 +e   g++l f++ ++++e   kll e           ikv++l+g+l+ + ++e+++      ++++++at++ae+++++p+v++V++++    +++ 
  CCE28316.1 356 EEPLPGDVLAFLTGQEEIEAvQKLLDEYAttlasnvpRIKVLPLYGQLSMDGQREAFRPVStPFTRKIVLATNIAETSVTVPGVRYVVDCGKAkiKQYr 454
                 555678999*******9988545552222555556889**********************9556777**************************663335 PP

                 ...............HHHHHHHTTSSST CS
  Helicase_C  98 ...............tsyiqriGRtgRa 110
                                +s+iqr GR+gR 
  CCE28316.1 455 prlgmesllakpiskSSAIQRTGRAGRE 482
                 678888889999999************6 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   6.6e-14   1.2e-10       3      78 ..     709     779 ..     707     782 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 6.6e-14
                  HHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHH CS
  OB_NTP_bind   3 aillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLll 78 
                  ++ l G+  + a+ +p ++ y t+++k  v+ihp+Svl      ++ e +++ e v t+k+y++ ++ai++aw+++
   CCE28316.1 709 QCFLRGYAYKTAMLAPDGS-YVTVHGKHVVAIHPASVLHG----HKKEAIMFLEHVFTNKNYAKKVSAIQAAWIAE 779
                  89999*************9.999999*************8....*****************************986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.6e-08   2.9e-05       4     102 ..     127     258 ..     123     292 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.6e-08
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee..........erpevv....fvtlpsstsskdllrellralglelka.................. 70 
                 + +ilv++Ge+G+GK+t + ++l++   + k ++               v     +t p     ++l++++ ++ g +l +                  
  CCE28316.1 127 DNRILVLVGETGSGKSTQIPQFLYRE-SWCKRRKvrvpgsqdeiF----VggtiAITQPRRVAATTLAHRVSQEAGTPLGKvgsdgrglvgysvrfdhr 220
                 679*********************96.78888889****844444....3663377777777************************************* PP

      AAA_22  71 .......erlsseell.ealeqalraravielliiDEaqh 102
                        + l++  ll e+l++   +++   ++++DE++ 
  CCE28316.1 221 vpkgtkiKFLTEGTLLqELLRDPYLRQYS--AIVVDEIHE 258
                 **999999999999998889999999988..*******97 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   4.9e-08   8.8e-05      14     173 ..     128     300 ..     115     303 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 4.9e-08
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHS...............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEE.ET..TSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.xx..xxxxxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyet...............kgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlli.ig..gvaardqlsk 93 
                 ++ +++ +eTGsGK++     ++    ++               +   g  + i  P r  a   ++++++   + ++ +v +   g  g + r ++++
  CCE28316.1 128 NRILVLVGETGSGKSTQIPQFLY----REswckrrkvrvpgsqdEIFVGGTIAITQPRRVAATTLAHRVSQEAGTpLG-KVGSDgRGlvGYSVRFDHRV 221
                 35577999******987444444....444444677777776665666699*****************9998885455.33322122336777777777 PP

                 HHTTCSEEEEEHHHHHH.HHHCTSSHCTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHH CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
        DEAD  94 ldngvdivvgtpgrldd.llstgklnlsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdv 173
                   +g++i + t g l++ ll++ +  l+q + +V+DE+++ + +      f+++il +  ++    +l   vi++SAT+  + +
  CCE28316.1 222 P-KGTKIKFLTEGTLLQeLLRDPY--LRQYSAIVVDEIHERSLDvdLLVGFLKQILLTGTEMRGGVPLR--VIIMSATADvEVI 300
                 7.99*************6667777..*************865544555666666666665666777755..*******985544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.4e-05      0.11      12      51 ..     119     157 ..     112     208 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.4e-05
      AAA_16  12 Llsalervrsgrp.elvllsGesGvGKsslvrell..ralekd 51 
                 +++al    +g+  ++++l+Ge G+GKs+ + ++l  ++++k+
  CCE28316.1 119 IQNAL----RGSDnRILVLVGETGSGKSTQIPQFLyrESWCKR 157
                 34444....444449**************99666622355555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.2e-05      0.11      11      72 ..     121     198 ..     116     274 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.2e-05
      AAA_30  11 ealltsgdrvavltGpAGtGKttalkal..reaweaag..............grviglAptgkaAkvLaeelgieast 72 
                 +al +s++r+ vl+G  G+GK+t + +   re w ++               g++++  p   aA +La+ +  ea t
  CCE28316.1 121 NALRGSDNRILVLVGETGSGKSTQIPQFlyRESWCKRRkvrvpgsqdeifvgGTIAITQPRRVAATTLAHRVSQEAGT 198
                 56778999*****************98767999999955999999999999888888888888888888665555544 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.3e-05      0.17       4     126 ..     122     274 ..     120     281 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.3e-05
      AAA_19   4 avealkekvllvtaGpGtGKTrvlkhivallvelggvkp............eeillvaftgrAakelrerlaalgaeatTiH.rlal............ 77 
                 a++ + +++l++++  G+GK++ + + +    + +++k+             +i++  + + Aa  l+ r+    +ea T   +++             
  CCE28316.1 122 ALRGSDNRILVLVGETGSGKSTQIPQFLYRESWCKRRKVrvpgsqdeifvgGTIAITQPRRVAATTLAHRV---SQEAGTPLgKVGSdgrglvgysvrf 217
                 66678899****************999987777777777779******99877777777778888898888...7776664414444777777777666 PP

      AAA_19  78 .........ldfddlltealelleeaeeekklqeee.llivDEfqd..vd.elqyrLlkall 126
                          ++f ++ t       e  ++  l +++ +++vDE+ +  +d +l + +lk++l
  CCE28316.1 218 dhrvpkgtkIKFLTEGTLLQ----ELLRDPYL-RQYsAIVVDEIHErsLDvDLLVGFLKQIL 274
                 66666554433333333333....44456777.6666******9762355666666676665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.19      22      38 ..     127     144 ..     106     146 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
      AAA_29  22 kg.atlltGpsGsGKSTl 38 
                 ++ + +l+G++GsGKST 
  CCE28316.1 127 DNrILVLVGETGSGKSTQ 144
                 335889***********5 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011       0.2      11      35 ..     128     153 ..     122     191 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                 TSEEEEEESTTSSHHHHH.HHHTTSS CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxx RF
    ABC_tran  11 gekvaivGenGaGKStLl.kllagll 35 
                 ++++++vGe+G+GKSt + + l++++
  CCE28316.1 128 NRILVLVGETGSGKSTQIpQFLYRES 153
                 6789************7624445544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 5604.98
//
Query:       CCE28317.1  [L=445]
Description: related to SNARE transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0081   16.3   0.0       0.02   15.0   0.0    1.6  1  Med7       MED7 protein
  ------ inclusion threshold ------
       0.17   12.2   6.2        0.1   12.9   3.2    2.0  2  V-SNARE_C  Snare region anchored in the vesicle membrane C-te


Domain annotation for each model (and alignments):
>> Med7  MED7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.3e-06      0.02      43     114 ..     178     304 ..     165     309 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.3e-06
        Med7  43 e......eqelelpkeLrvlipPeppk....egeYrvFGenwsllkdklpsLeeqgieqly...................................... 93 
                        e+++e+        pP++ +    +g+Y  +Ge+ ++++++ ++ e qgi                                          
  CCE28317.1 178 AlfsgvqERQAEK------QAPPPYGQtgpeNGSYGGYGEQREMTEEEQEEAEYQGILAQKrqiqqessssvsrsvqmarqanevgqatlarlgaqger 270
                 1344433333233......34888876677799************************55559999********************************** PP

        Med7  94 .............eedesedrkkeLkkLlrslll 114
                              +++  +dr++eLk+L+rs+ +
  CCE28317.1 271 lhnteknldlaanQNKIAQDRAAELKTLNRSMFA 304
                 ***********99899999************976 PP

>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.2   1.1e-05       0.1       5      46 ..     238     279 ..     234     286 .. 0.87
   2 ?   -1.6   0.0      0.39   3.5e+03      22      47 ..     404     429 ..     384     437 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
   V-SNARE_C   5 resdrlknShrivdetisiGaailedLhsQretLkrarsklh 46 
                  +s+++ +S +++ +  + G+a+l  L+ Q e+L ++ + l 
  CCE28317.1 238 ESSSSVSRSVQMARQANEVGQATLARLGAQGERLHNTEKNLD 279
                 46789*******************************998775 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.39
   V-SNARE_C  22 siGaailedLhsQretLkrarsklhn 47 
                   G ai  + +sQ+ ++ r+  k   
  CCE28317.1 404 MVGRAIGKEVDSQNTRIDRIMGKSDA 429
                 46777777778888777777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1204  (0.0671538); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3434.59
//
Query:       CCE28318.1  [L=898]
Description: related to GTP-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-08   33.2   0.0    0.00018   21.1   0.0    2.3  2  GTP_EFTU     Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.017   15.5   0.0       0.04   14.3   0.0    1.6  1  AAA_16       AAA ATPase domain
      0.062   13.2   1.4       0.88    9.5   0.1    2.2  2  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   9.5e-05      0.57       5      92 ..     295     400 ..     291     419 .. 0.85
   2 !   21.1   0.0   2.9e-08   0.00018      99     192 ..     449     573 ..     436     575 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9.5e-05
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE.....................T.TCSSEEEEEEEESSSG CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle.....................k.etkkylinliDtPGHv 81 
                  i++ g + +GK++L+++L + t +  + ++    +  l ++ +E + g+T ++a+  +                      +  +  +l+ l D+ GH 
  CCE28318.1 295 RITLTGPTTSGKSSLLGTLSTGTLDNGRGKS----RLSLLRHRHEMASGVTSSIAQELVGykddsilnfsqpnieswvdihDcAEGGRLVFLSDSGGHP 389
                 678899999***********88887666433....3459999*********99998777778****************9973588999*********** PP

                 GGHHHHHHHHH CS
    GTP_EFTU  82 dFskevirglr 92 
                  F ++v rgl 
  CCE28318.1 390 RFRRTVLRGLM 400
                 ********975 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 2.9e-08
                 EEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH.............................HHHHHHHHHTTT.. CS
    GTP_EFTU  99 lvvdaveGvepqteevlrlalkegvpiivfiNKmDrl.kaelkeiveevkqklsrk.............................eeklekygekge.. 165
                  v +a+   ++ +  +l+l+lk++vp+ ++i+K+D + k++l+++   +   +++                              e+ +++++e+g+  
  CCE28318.1 449 AVAAAAAANTNLSHAHLNLVLKLDVPMAIVITKLDLAsKQSLQQTMAHLLAAIKKAgrvpkilqpdqvqhgddlqeipgtdvrkvENLVQSIVESGDft 547
                 566666677778899**********************98899999999998886668999999999999999999999999998877777777777788 PP

                 TTEEEEEEBTTTTBTHHHHHHHHHHHS CS
    GTP_EFTU 166 kevpvvfgSalkgegvktllealvell 192
                 + vp+v +Sa++g g+  l+ al + l
  CCE28318.1 548 SHVPIVLTSAVNGTGMG-LVHALLSRL 573
                 99************998.777766655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.7e-06      0.04      19     163 ..     287     502 ..     282     511 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.7e-06
      AAA_16  19 vrsgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdql...esaipysalaqalareellrqlldeaesaeleawrekleeala....... 106
                  +s++p   + l+G+  +GKssl+ +l +   ++     rgk + +   +    +   a+  +  ++ ++l   ++++ l+  +  +e+++        
  CCE28318.1 287 GSSPTPqLRITLTGPTTSGKSSLLGTLSTGTLDN----GRGKSRLSllrH----RHEMASGVTS-SIAQELVGYKDDSILNFSQPNIESWVDihdcaeg 376
                 55666677788*****************988877....455555553221....1235555533.5555555555556777777777777777777778 PP

      AAA_16 107 ...................................................................avpelagaeasrllellkrll.allsrderpl 137
                                                                                    ++++la a+a + +  l+++  +l  + + p 
  CCE28318.1 377 grlvflsdsgghprfrrtvlrglmnwaphwsilciagdvpentsigvdatlpsakdapsfsssmpssSSSSLAVAAAAAANTNLSHAHlNLVLKLDVPM 475
                 *************************************************998888888877666666555555555566666666665566666677** PP

      AAA_16 138 vlvlDdlqwadeaslql.laaLlrlle 163
                  +v+  l+ a  +slq  +a+Ll++ +
  CCE28318.1 476 AIVITKLDLASKQSLQQtMAHLLAAIK 502
                 ****************99999999865 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.023   1.4e+02     103     122 ..     297     316 ..     291     347 .. 0.82
   2 ?    9.5   0.1   0.00015      0.88      28      72 ..     454     501 ..     445     526 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.023
                  EEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpe 122
                  +l G++  GKS+L+ +l   
   CCE28318.1 297 TLTGPTTSGKSSLLGTLSTG 316
                  689***********999874 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00015
                  TT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH...HHHHHHHHH CS
  RsgA_GTPase  28 pelslnlldrfLvlaeekgiepvivlnKiDlleeee...eleelkeel 72 
                     ++nl +  L l+ + ++++ iv++K+Dl+++++   ++ +l +++
   CCE28318.1 454 AAANTNLSHAHLNLVLKLDVPMAIVITKLDLASKQSlqqTMAHLLAAI 501
                  356777777788899999*****************9433344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 6205.32
//
Query:       CCE28319.1  [L=118]
Description: uncharacterized protein CPUR_01794 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-28   97.1   7.9    7.7e-28   96.9   7.9    1.1  1  Rab5ip    Rab5-interacting protein (Rab5ip)
  ------ inclusion threshold ------
       0.17   12.2   0.0       0.82   10.0   0.0    1.8  2  RL11D     Glycoprotein encoding membrane proteins RL5A and RL


Domain annotation for each model (and alignments):
>> Rab5ip  Rab5-interacting protein (Rab5ip)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   7.9   8.6e-32   7.7e-28       1      82 []      23     113 ..      23     113 .. 0.92

  Alignments for each domain:
  == domain 1  score: 96.9 bits;  conditional E-value: 8.6e-32
      Rab5ip   1 vlsnlrsltalllGvvaGilgLeslsGflfylllsllvsllfyalkvkgks..........kkyfrgalkelwteglvnglagFvLtWtlfY 82 
                 vlsnl+sl+a+l+Gv+aGilgLes+ Gflfy+++s++++l++y+++v+++s           +yf gal +lwt+g++ngl+gF+LtWtlfY
  CCE28319.1  23 VLSNLQSLSASLFGVAAGILGLESYHGFLFYIAFSIITALMMYSFQVAPESlaegrslfdtGRYFAGAL-DLWTSGILNGLSGFILTWTLFY 113
                 699*********************************************999766665555555****77.*********************9 PP

>> RL11D  Glycoprotein encoding membrane proteins RL5A and RL6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   9.1e-05      0.82      57      94 ..      16      52 ..      10      57 .. 0.80
   2 ?   -0.2   0.0      0.14   1.2e+03      73      87 ..      78      92 ..      73     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.1e-05
       RL11D 57 scshtsldlcnlksqddslfdlsrrlgenmdeedGdlw 94
                s  h++ +l nl+s + slf+++  +   ++ + G l+
  CCE28319.1 16 SIIHNTKVLSNLQSLSASLFGVAAGIL-GLESYHGFLF 52
                778*******************87654.4777777665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.14
       RL11D 73 dslfdlsrrlgenmd 87
                 slfd +r+++  +d
  CCE28319.1 78 RSLFDTGRYFAGALD 92
                689*****9998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 942.09
//
Query:       CCE28320.1  [L=365]
Description: probable uroporphyrinogen decarboxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.7e-124  414.8   0.0     3e-124  414.7   0.0    1.0  1  URO-D     Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> URO-D  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  414.7   0.0  1.7e-128    3e-124       2     345 ..       9     361 ..       8     362 .. 0.96

  Alignments for each domain:
  == domain 1  score: 414.7 bits;  conditional E-value: 1.7e-128
                 ---HHHHHHTT---SS--B--TT-SSTTSHHHHHHHTSSSHHHHHH-HHHHHHHHHHHHHHH-..-S-EE-S--TTGGGGGGT-EEEEETTTEEEEE-- CS
       URO-D   2 knerllralrgekvdrvPvwlmRqaGrylpeyraeragvsflelcknpelaaevtlqpvrrfg..lDaailfsdilveaealGlevefeegegPvvekp 98 
                 kn++llra+ g+ v+r+P+w+mRqaGrylpey++ + g +f+e+c++pe a+ +tlqpv+rf   lDaai+fsdilv+++a+G+eve+++++gP++++p
  CCE28320.1   9 KNDLLLRAAWGQVVERPPMWVMRQAGRYLPEYHEAKGGRDFFECCRDPEVASTLTLQPVERFAglLDAAIIFSDILVIPQAMGMEVEMVDKKGPHFPNP 107
                 89************************************************************99*********************************** PP

                 S-....GGGS----GGG...G..HHHHHHHHHHHHH.--SS-EEEEEE-HHHHHHHHHCTT.-SS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH CS
       URO-D  99 vrtaedveklevpddvee..grlpyvleaikllkkelggevpligfvgaPftlasylveGg.skgfekllkllykdpeevhklldkltdvvieylkaqi 194
                 + ++ d +  +v + + +  ++l+yv++ai+l++k+l g+vpligf+g+P+tl++y+veGg +k f + +++ y++ +e ++ll+k++d+++e+l+ q+
  CCE28320.1 108 LKSPTDGQYQQVLERKVNvsKELSYVYDAITLTRKKLAGRVPLIGFCGSPWTLFCYMVEGGgTKLFIQSKTWVYRYAAESKALLEKIADICVEHLALQV 206
                 ***9997744444433224489***************************************************************************** PP

                 HTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHH.H-.....-S-EEEEESSHH.HHHHHHTTS--SEEE--TTS-HHHHHHSS.....EEE-- CS
       URO-D 195 eagAdaiqifDswagllspedfeefvlpylkrivdevkaegp.....kvpvilfikgagaeiledlaelgadvlsldwtvdlkeaarevg.dkvalqGn 287
                 +agA+++++fDswag l p  f ef+ pyl+ i+++++++ +      vp+++f+kga+ + l+ +++lg++v+++dw +d+++a++  g + v+ qGn
  CCE28320.1 207 QAGAQMVMVFDSWAGELGPLSFGEFSEPYLAHIAKKLPGKLQsmglaPVPMTVFPKGAW-HALDSVCDLGYNVVGMDWLQDPEAAVKIRGsRDVVFQGN 304
                 ****************************************99*****************.9*********************999998888999***** PP

                 B-G.GGGGS-HHHHHHHHHHHHT.T---SSSEEB-BSS---TTS-HHHHHHHHHHHHT CS
       URO-D 288 ldPialLlgspeeiekevkeilekgaggkkgyilnlGhgippetppenvkalveavke 345
                  dP  +L+g++e+i ++v+ ++++   +kkg+i+nlGhgi+p+++p+n+k ++e +++
  CCE28320.1 305 ADP-GVLYGTKEAITQAVEHMVKGFWVNKKGWIANLGHGITPGVDPDNLKFFFEEIHR 361
                 ***.9******************88888***************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2780.86
//
Query:       CCE28321.1  [L=132]
Description: uncharacterized protein CPUR_01796 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-15   57.5  11.4    3.1e-12   46.9   3.2    2.6  3  DUF3602   Protein of unknown function (DUF3602)


Domain annotation for each model (and alignments):
>> DUF3602  Protein of unknown function (DUF3602)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3     6e-07     0.011      33      52 ..       7      26 ..       1      33 [. 0.71
   2 !   46.9   3.2   1.7e-16   3.1e-12      25      81 .]      33      86 ..      24      86 .. 0.86
   3 !   15.3   2.0   1.3e-06     0.024      33      52 ..      78     100 ..      72     125 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6e-07
     DUF3602 33 stGRGGaGNihssdrerpe.t 52
                s GRGGaGN+++++ + p+  
  CCE28321.1  7 SHGRGGAGNMADAS-KSPKlN 26
                67*********776.777643 PP

  == domain 2  score: 46.9 bits;  conditional E-value: 1.7e-16
     DUF3602 25 dgsttsafstGRGGaGNihssdrerpe.trkdedvereearrkeeaeeyhvGRGGaGN 81
                + +++  ++tGRGG+GN++++d  +p+ tr  +dve+  +r    +   h+GRGGaGN
  CCE28321.1 33 PLLKKPVVTTGRGGTGNMAKND--DPQaTRLRQDVEAVPRRYS--SGAQHTGRGGAGN 86
                55566789***********999..88889999***99998887..7899********9 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 1.3e-06
     DUF3602  33 stGRGGaGNihssdrerpe...t 52 
                  tGRGGaGN+ ++++e      +
  CCE28321.1  78 HTGRGGAGNVFRESEELTDlarQ 100
                 79********9777433333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 948.62
//
Query:       CCE28322.1  [L=476]
Description: uncharacterized protein CPUR_01797 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-90  302.7   0.8    7.3e-90  301.3   0.0    2.0  2  Velvet    Velvet factor


Domain annotation for each model (and alignments):
>> Velvet  Velvet factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.0      0.11     2e+03     102     123 ..      16      37 ..       1     111 [. 0.56
   2 !  301.3   0.0   4.1e-94   7.3e-90       1     249 [.     146     463 ..     146     465 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.11
                 ---------------------- CS
      Velvet 102 ksqassaessapsssaapsaqe 123
                 +++++++++ +p+s+++p+  +
  CCE28322.1  16 RQSHDQQPPPQPPSRQQPRLLQ 37 
                 1111222222222222222222 PP

  == domain 2  score: 301.3 bits;  conditional E-value: 4.1e-94
                 EEEEEEE---EEE---SS-S-----BS--EEEEEEEETTT-SB--GGG---TTEEEEEEEEETTSSSB--EE--.---------.-------------. CS
      Velvet   1 ysLevvQqPkrARmCgfgdkdrrpidPppvvqLrvtdaetnsevdveeldssffvvtvdLwsedgtkevnlvkssssasssisseasssssqsseess. 98 
                 ysL+vvQqPkrARmCgfgdkdrrpi+Ppp+v+L+vtd++t++e++++++d+s++v++vdLw+edgt+e+nlv+  s+ s  +s+   ++++ ss++++ 
  CCE28322.1 146 YSLDVVQQPKRARMCGFGDKDRRPITPPPCVRLIVTDVATGKEINCADIDHSMYVLNVDLWNEDGTRELNLVRA-STGSPCVST-IGAYAYMSSNNGDa 242
                 99*********************************************************************965.444455655.23333333333333 PP

                 ....................--------------------------..................................................... CS
      Velvet  99 ....................sspksqassaessapsssaapsaqee..................................................... 124
                                     s+   q+++                +                                                     
  CCE28322.1 243 gfnsyaqqyapgyrdaslgpSQAYVQDYQM---------------Qsgynqnsaypsnspygppqqyyypphqsyradggalppqssvppyhmndaygn 326
                 344442232333333333332222222222...............2222222223333334666677777778888888889999999999999***** PP

                 ......-------------------EESEEE--EEE-EEEE-TT--EEEEEE---EEESS-EEEEEEEEEEE-B-S......--B--S..SEEEEEEEE CS
      Velvet 125 ......kekkeatlssssnqasskltrnLiGslvasafrlkdpedkpgifFvfqDLSVRteGtFrLrfrlvnvgae......avaveekegsapvlaev 211
                       ++ + ++ s    q+++++trnLiGsl+asafrl+d+e++ gi+Fv+qDLSVRteG FrLrf++vnvg +       +  ++++++apvla +
  CCE28322.1 327 manympEPGSITRISIVGGQPQGMFTRNLIGSLAASAFRLSDTEKRAGIWFVLQDLSVRTEGPFRLRFSFVNVGPPdssprdGALAKVNKSRAPVLACC 425
                 ****99999999*******************************************************************998666677789******** PP

                 E---EEEE-TTT--------HHHHHHHHTT----XXXX CS
      Velvet 212 fSdpFtVysakkFpGvlesTaLskalakqGikipiRkd 249
                 fS++F+V+sakkFpGv+esT+Lsk++a+qGikipiRk+
  CCE28322.1 426 FSEVFNVFSAKKFPGVCESTPLSKTFATQGIKIPIRKE 463
                 ************************************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3500.99
//
Query:       CCE28323.1  [L=564]
Description: uncharacterized protein CPUR_01798 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4318.47
//
Query:       CCE28324.1  [L=798]
Description: related to rabkinesin-6 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-55  186.7   0.0      1e-54  185.7   0.0    1.5  1  Kinesin       Kinesin motor domain
    2.1e-10   40.7   0.0    1.3e-08   34.9   0.0    2.3  2  Microtub_bd   Microtubule binding
     0.0012   18.9   0.3     0.0027   17.7   0.3    1.5  1  APC_N_CC      Coiled-coil N-terminus of APC, dimerisation dom
  ------ inclusion threshold ------
      0.036   13.8   0.1          5    6.8   0.0    2.4  2  DUF3236       Protein of unknown function (DUF3236)
      0.049   13.8   0.1      0.049   13.8   0.1    2.3  3  Herpes_BLRF2  Herpesvirus BLRF2 protein
        4.1    7.6   6.7       0.55   10.5   0.6    2.3  2  JIP_LZII      JNK-interacting protein  leucine zipper II


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.7   0.0   3.5e-58     1e-54      29     332 ..      51     509 ..      19     510 .. 0.84

  Alignments for each domain:
  == domain 1  score: 185.7 bits;  conditional E-value: 3.5e-58
                 EEEEEEECTTSCEEEEESEEEETTS-HHHHHHHH.HHHHHHHHH.....TTSEEEEEEEESTTSSHHHHHTBCTTTSBSHHHHHHHHHHHHHHHCTTTH CS
     Kinesin  29 kkskkenkeeeekkfkFdkvfdeeatqeevyeet.akplvesvl.....eGynatifaYGqtgsGKTyTmegkeeeeeGiipraleelFesikkekeek 121
                 + +  ++++++ +kf+F +vfd++a+q +v++ t + +l e vl     eG  a + + G+tgsGKT+T+ g+ ++++G+++ al+ +F+si ++  ++
  CCE28324.1  51 TLNPPTDRRRAIEKFAFTRVFDDSASQLDVFQCTeIPSLAEGVLapqggEGTDAVVATLGVTGSGKTHTILGS-KSQRGLTQLALDVVFRSIGSNMLDS 148
                 3344567778889******************9874667888888666667999*******************8.999***************9987666 PP

                 ................................................................................................... CS
     Kinesin 122 ................................................................................................... 121
                                                                                                                    
  CCE28324.1 149 tttpliieslqacdsseanlstaahfldsifaepaghsrapsrattplikssdganglllsrapssapkwdkpghpvplttatrvrnkakqeekgehni 247
                 89************************************************************************************************* PP

                 ..............................EEEEEEEEEEEEEETTEEEETTSTTT......TSTSS..EBEEEECTTSCCEEETTS--EEESSHHHHH CS
     Kinesin 122 ..............................ekefsvkvsylEiYneeiyDLLeskk......skkkk..klkiredskkgevyvkgltevevksaeevl 182
                                               + e+ v +s++E+ n++iyDLL++ +      + +++    k +e s   + +v+gl++v +++++e++
  CCE28324.1 248 tsptsrrnlarpsalpqlpdissisiscdaSAEYAVVISMYEVHNDRIYDLLTPATksastrEYRRRplLFKSTELSPD-RKVVAGLRKVVCTTLKEAV 345
                 ******************************99**********************9877665422222222233333332.579**************** PP

                 HHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHT...C CS
     Kinesin 183 ellekgeknrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaek...k 278
                 +++e g  +r+va t  n+ SSRSH  f  +++++++ ++       skl++vDLAGsEra+++++ +g +l Ea++iN+SL+ Lg+++++ +e    +
  CCE28324.1 346 TVMEAGLLERRVAGTGSNSVSSRSHGFFCFEVKKRTHGKRPG-PWGGSKLTIVDLAGSERARDAKT-QGATLVEAGKINESLMYLGQCLQTQSEVsssS 442
                 **********************************99876655.5789**************99995.7999*******************999988889 PP

                 CTSTSCGGGSHHHHHT.GGGH.......SSSS......EEEEEEEE-TBGGGHHHHHHHHHHHHHHCT CS
     Kinesin 279 kskhipYRdSkLTrlL.qdsL.......gGns......ktlmivtvspssenleetlstlkfaerake 332
                 k +++pYR++kLT+lL  +s+        Gn+      + +mivt +p+  +++ t + l++++ a+e
  CCE28324.1 443 KPNVVPYRQCKLTELLfSNSFplssassHGNAprrnpqRGVMIVTADPR-GDFNATSQILRYSALARE 509
                 99************98444442222222354322222267888888885.778888888888888876 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   4.4e-12   1.3e-08      37     124 ..      50     144 ..      16     158 .. 0.78
   2 ?    3.4   0.0     0.022        67     126     149 .]     276     299 ..     251     299 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 4.4e-12
                  EEEETTT...TTTEEEE-SEEEECTTHCCCCCC..CCHHHHHHHH..T...T--EEEEEEES................ST-HCHHHHHHHHHHCC CS
  Microtub_bd  37 akikfpeeekkkkkefsFdrvfeseseqeevfe..eisqlvqsal..d...gynvcifaygqTGsGKtyTmegeeeeagmipraveeifetisel 124
                  ++++ p++ ++  ++f F+rvf+ +++q +vf+  ei  l++ +l  +   g++  + ++g TGsGKt+T+ g+++++g ++ a++ +f+ i ++
   CCE28324.1  50 ITLNPPTDRRRAIEKFAFTRVFDDSASQLDVFQctEIPSLAEGVLapQggeGTDAVVATLGVTGSGKTHTILGSKSQRGLTQLALDVVFRSIGSN 144
                  23333347788999*****************98668999999998552444799******************************99999988665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.022
                  SCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 126 ekgwkyeielqfveiynekvqDlL 149
                  + +++y++ +++ e+ n++++DlL
   CCE28324.1 276 DASAEYAVVISMYEVHNDRIYDLL 299
                  56899******************8 PP

>> APC_N_CC  Coiled-coil N-terminus of APC, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.3   8.9e-07    0.0027       4      27 ..     683     706 ..     682     709 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 8.9e-07
    APC_N_CC   4 dQLvrQvEaLkkenthlrrELedN 27 
                 + L +QvE L++en+ l+rEL   
  CCE28324.1 683 EDLTQQVERLRRENAILKRELASR 706
                 5799*****************865 PP

>> DUF3236  Protein of unknown function (DUF3236)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0017         5      71     118 ..      79     125 ..      59     135 .. 0.84
   2 ?    4.6   0.0     0.008        24      67      98 ..     140     171 ..     129     175 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0017
                 GGGGGSSSHHHHHHHHHHHH.S--SEEEEEEESSSTTS-EEEEEEETTS CS
     DUF3236  71 nsaDltriPalskalialdi.sdadlviaRGRLGvpGsGsllvildekg 118
                 +++ +t+iP+l+ +++a +  +++d v+a   LGv GsG    il +k+
  CCE28324.1  79 DVFQCTEIPSLAEGVLAPQGgEGTDAVVA--TLGVTGSGKTHTILGSKS 125
                 67889**********998752789****9..5*******9999988876 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.008
                 SSTGGGGGGSSSHHHHHHHHHHHHS--SEEEE CS
     DUF3236  67 eietnsaDltriPalskalialdisdadlvia 98 
                 +i  n+ D t +P +  +l a d s+a+l  a
  CCE28324.1 140 SIGSNMLDSTTTPLIIESLQACDSSEANLSTA 171
                 57889***********************9765 PP

>> Herpes_BLRF2  Herpesvirus BLRF2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.2   6.5e+03      31      66 ..     324     359 ..     313     368 .. 0.77
   2 ?   -1.9   0.3       1.2   3.6e+03       3      30 ..     570     597 ..     568     621 .. 0.64
   3 ?   13.8   0.1   1.7e-05     0.049       3      38 ..     681     716 ..     679     729 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.2
  Herpes_BLRF2  31 pkdeeLTaaekeavltstvgrlsskaakkieervrk 66 
                    +d++  a  +++v t   ++++   a  +e+rv  
    CCE28324.1 324 SPDRKVVAGLRKVVCTTLKEAVTVMEAGLLERRVAG 359
                   678888888899999999999999999999999875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
  Herpes_BLRF2   3 tvEdlaaelakLkvENkaLkkklkssvs 30 
                   t+E  a e+a+++ E  +L+ ++  +v+
    CCE28324.1 570 TMEIAALEIARMNEEIDQLRLEVDAQVE 597
                   6777777777777777777777765555 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 1.7e-05
  Herpes_BLRF2   3 tvEdlaaelakLkvENkaLkkklkssvspkdeeLTa 38 
                    vEdl++++ +L+ EN  Lk++l+s    k ++L +
    CCE28324.1 681 LVEDLTQQVERLRRENAILKRELASRSPTKRKPLQD 716
                   59*********************9987777666654 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.8      0.63   1.9e+03      38      69 ..     581     612 ..     575     619 .. 0.68
   2 ?   10.5   0.6   0.00018      0.55      25      58 ..     679     712 ..     677     718 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.63
    JIP_LZII  38 LtsereiLreEleslqkakerlesrikelEee 69 
                 +++e + Lr E+++  +a+ + e  +  +E+ 
  CCE28324.1 581 MNEEIDQLRLEVDAQVEARMTAEAHLLSMEDR 612
                 66677777777777777777777766666654 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00018
    JIP_LZII  25 nvvkddLIarvdeLtsereiLreEleslqkaker 58 
                 nv  +dL ++v+ L  e+ iL+ El s   +k++
  CCE28324.1 679 NVLVEDLTQQVERLRRENAILKRELASRSPTKRK 712
                 66779********************998766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 5590.19
//
Query:       CCE28325.1  [L=264]
Description: uncharacterized protein CPUR_01800 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.026   14.3   0.1      0.049   13.5   0.1    1.4  1  Mid2             Mid2 like cell wall stress sensor
      0.038   13.9   0.7      0.086   12.8   0.7    1.6  1  Gram_pos_anchor  LPXTG cell wall anchor motif
       0.13   12.4   0.0       0.24   11.6   0.0    1.3  1  PMT_2            Dolichyl-phosphate-mannose-protein mannosylt
       0.14   12.0   2.2       0.28   11.1   2.2    1.4  1  Phage_Coat_B     Phage Coat protein B
       0.83    9.1   5.4       0.14   11.6   0.8    2.0  2  SKG6             Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> Mid2  Mid2 like cell wall stress sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.4e-05     0.049      18      71 ..     147     197 ..     135     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
        Mid2  18 lyttvtytptataessnkskssGLskknrniviGcvvGigvPlllvillllyif 71 
                 + ttv++t + t+ + +k+ s+G+s     + +G+ +G+g Pl +++++ll + 
  CCE28325.1 147 STTTVAATCSVTQAAVEKQCSEGIST---GVAVGIGMGVGAPLAMAVAALLVML 197
                 45788888889999999999****97...699***************9998764 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.7   2.4e-05     0.086      11      42 ..     171     203 ..     171     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
                      XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX CS
  Gram_pos_anchor  11 kTGengnifltaaGllallggllL.lvkrRKke 42 
                      +TG +  i++ +++ la+++++lL  + r K++
       CCE28325.1 171 STGVAVGIGMGVGAPLAMAVAALLvMLLREKNN 203
                      6999999*******9999999999855555544 PP

>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.7e-05      0.24      75     132 ..     144     200 ..     128     211 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.7e-05
       PMT_2  75 daplvllwalalylllraleknklkywllagvlfGlgflsKytaallliaallyllis 132
                 +   + ++a+++ ++  a+ek+  +  + +gv++G+g+ +    a+ + a+l+ ll +
  CCE28325.1 144 NLSSTTTVAATCSVTQAAVEKQ-CSEGISTGVAVGIGMGVGAPLAMAVAALLVMLLRE 200
                 4555667777777777777777.59***********************9888777655 PP

>> Phage_Coat_B  Phage Coat protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.2   7.7e-05      0.28      23      82 ..     139     200 ..     126     201 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.7e-05
  Phage_Coat_B  23 agsvtaasslpvfaas.vidtsavesaitdgksdmkaig.gyivgalvilavagliysmlrk 82 
                      v+  ss  + aa+  +  +ave+  ++g s   a+g g  vga + +ava l+  +lr 
    CCE28325.1 139 RADVANLSSTTTVAATcSVTQAAVEKQCSEGISTGVAVGiGMGVGAPLAMAVAALLVMLLRE 200
                   55666666666665541567789***************98899*************999985 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3      0.65   2.3e+03       6      14 ..     145     153 ..     144     157 .. 0.67
   2 ?   11.6   0.8   3.8e-05      0.14       9      32 ..     175     198 ..     167     201 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.65
        SKG6   6 nsntvaIav 14 
                 +s+t+++a+
  CCE28325.1 145 LSSTTTVAA 153
                 567777775 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 3.8e-05
        SKG6   9 tvaIavaVaVPVaViiivLlaili 32 
                 +v I+ +V+ P+a  +++Ll+ l+
  CCE28325.1 175 AVGIGMGVGAPLAMAVAALLVMLL 198
                 34455567779**99999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2100.45
//
Query:       CCE28326.1  [L=746]
Description: uncharacterized protein CPUR_01801 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-13   49.2  16.4    7.2e-12   44.8  16.4    2.6  1  TRP       Transient receptor potential (TRP) ion channel


Domain annotation for each model (and alignments):
>> TRP  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8  16.4     4e-16   7.2e-12      38     411 ..     223     562 ..     179     575 .. 0.76

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 4e-16
         TRP  38 vlslflyfQsvafigmlsvnyPpvlaawtqnfaWsmglirvsfmqkiinwyvqstgGtatlvlsssstssvsvkralkrgeskslpesssklvrGikrv 136
                 +++ ++y+Q+++f+g l +n P++l++ ++ + Ws+++++ +      + y + + G    +++ + t+s                   +  ++G++  
  CCE28326.1 223 IGDCISYLQFIFFTGSLTLNEPGFLRPVVSKMSWSTLMLPAGL-VAHKSHYSGVQDG----IYEVNGTMS-------------------EG-TKGLELA 296
                 7889************************************996.5566899999999....333322221...................11.25***** PP

         TRP 137 aekagiestnafmtgllffliliallvvlvllfKlllellark.klikedrlkefrkn..wlgilkgallrlilifffqllvlclfeftqrds..aavv 230
                 ++  g   t  ++ +++++ +li++l+++++++   l         +k+++    r++  +     ++l  ++  +  +l+  +++ +t+ +       
  CCE28326.1 297 TQVIGGTVTVNTWLNIITLGALIFFLILGLMILERRLTRARYLaPENKTSSAYGSRDDptIHAAALATLRLFCSYLLLPLVAWSTYILTYAKGipVYYT 395
                 ***********************9999988888776654433322233344444454411333333444445566778899999999997664113444 PP

         TRP 231 vlAvillalflgvllffafrvlitarkskrlhknpaylLysdkkvlnkyGflyeqyrasrywffvpllvylfvkalfialaqgsGkvQvialliiElly 329
                 v Avi+++++ ++++f+++r   +   +         +++++++ + + + + + y        + ++v+lf++++ i+++q  G+vQ ++ll+ E++ 
  CCE28326.1 396 VAAVIMVICLATLVCFAMWRGSPHRMGYLLV-----DSIHKKPQSTSRQSRMQDVY------A-MSVFVLLFLRGAAIGGLQMAGLVQLLVLLMTEAIQ 482
                 7777777777777777777765554443333.....399******99888665555......4.4467889**************************** PP

         TRP 330 lvlliwlrPyedkrtnvlniiisvvkvlnvilllaFseefglseivktvvGvvlivinavlalvlliliivnaiiallsknp 411
                 l +++++  y ++     +  ++v +++  +l + F+  ++ + +v+ ++G+ ++ ++ ++ l l++l +++ +++l+ ++ 
  CCE28326.1 483 LTFFAFS--YRQNPLLSQTGRMPVPRTMALLLGVGFVPDLEAELSVRIILGFAVLFVHTCVLLSLFLLPAIHDMYILCTRSS 562
                 9988775..88888888888**************************************999999999988888888875554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 5132.75
//
Query:       CCE28327.1  [L=451]
Description: uncharacterized protein CPUR_01802 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-05   25.5   0.2      3e-05   24.1   0.2    1.9  1  Arylesterase  Arylesterase


Domain annotation for each model (and alignments):
>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.2   1.7e-09     3e-05       1      46 [.     205     251 ..     205     301 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.7e-09
  Arylesterase   1 nDivavGpdsfyatndhyFgdnfllllemsl.qlawtavvYyspsev 46 
                   nDi av p sf++tndhy+ ++ l  +e    + +w++v+Y + +++
    CCE28327.1 205 NDIFAVSPTSFFVTNDHYYREGLLRDVEDLFyGAKWSNVIYVEFQDL 251
                   8************************9997642899******876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3624.66
//
Query:       CCE28328.1  [L=290]
Description: related to metalloprotease MEP1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-14   54.2   0.2    3.1e-14   53.2   0.0    1.5  2  Peptidase_M43  Pregnancy-associated plasma protein-A
      2e-06   28.3   0.0    3.1e-06   27.7   0.0    1.4  1  Reprolysin_3   Metallo-peptidase family M12B Reprolysin-like
    5.6e-05   23.4   2.4    0.00018   21.8   2.3    1.8  1  Reprolysin_5   Metallo-peptidase family M12
     0.0033   17.3   0.3     0.0052   16.7   0.3    1.3  1  Reprolysin_2   Metallo-peptidase family M12B Reprolysin-like
     0.0042   16.7   0.1     0.0072   16.0   0.1    1.3  1  Reprolysin_4   Metallo-peptidase family M12B Reprolysin-like
     0.0088   15.9   0.0      0.013   15.3   0.0    1.2  1  Peptidase_M10  Matrixin
  ------ inclusion threshold ------
      0.016   14.4   0.2      0.028   13.6   0.2    1.3  1  DUF4953        Met-zincin
       0.12   11.3   0.8       0.19   10.6   0.8    1.3  1  Peptidase_M66  Peptidase M66
       0.36   10.8   0.7       0.59   10.1   0.7    1.2  1  Peptidase_M54  Peptidase family M54


Domain annotation for each model (and alignments):
>> Peptidase_M43  Pregnancy-associated plasma protein-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.5     9e+03      18      32 ..      69      82 ..      68      94 .. 0.60
   2 !   53.2   0.0   1.6e-17   3.1e-14      70     149 ..     199     281 ..     193     283 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.5
  Peptidase_M43 18 mnvyiqndladGltk 32
                   +nvyi    +d  t 
     CCE28328.1 69 VNVYIHVVARD-QTV 82
                   78888763333.333 PP

  == domain 2  score: 53.2 bits;  conditional E-value: 1.6e-17
  Peptidase_M43  70 stLthelGhfLgLihtfegg.CerGegDkvsDtpsedgkevsavnkdllnCngetin..sqnfmdyng..vrasftqdqvdrmve 149
                     t the+Gh++gL+htfeg+ C  G gD+++Dtp++ +   + + ++  +C +++     +n+mdy++  ++++ft +q  r+++
     CCE28328.1 199 KTATHEVGHWFGLMHTFEGEdC-GGRGDHIDDTPAQ-ASSSQGCPTGRDSCPDDPGLdpIHNYMDYSNdaCYEQFTPGQAVRIRN 281
                    689****************857.999*********9.5556677888888*9998642379*****9889***********9987 PP

>> Reprolysin_3  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.6e-09   3.1e-06      28     124 .]     108     214 ..      71     214 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.6e-09
  Reprolysin_3  28 iiitdkasdpytkkdatealdelaevtaeaergqagyDlvhlftarde..sgvgGlAyvgsvcnsskk..........agvnsgssvlgkvgadtva 112
                   i +++k ++ ++  ++++a+d   e+ +++ r+ +  Dl  +f +      g++G+  + ++ +++++          +g++ g   +g    +t++
    CCE28328.1 108 ISFVHKNTSWTV--QPSWAMDHDEEDMKRSLRQGSYRDLNLYFLRALAgpAGTLGYCNFPGAVAPASRlfymdgctlhVGSVPGGPLIGFNLGKTAT 202
                   555555544444..469*************99999********99766788999998887777777774666665555444444445555555**** PP

  Reprolysin_3 113 HEiGHnfganHt 124
                   HE+GH fg++Ht
    CCE28328.1 203 HEVGHWFGLMHT 214
                   ***********7 PP

>> Reprolysin_5  Metallo-peptidase family M12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   2.3   8.9e-08   0.00018     141     178 ..     196     249 ..      66     253 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 8.9e-08
  Reprolysin_5 141 tevqvvaHElGHnfGavHDcdsss................esqsCslsnstepa 178
                   +  ++ +HE+GH fG  H+++++                 +sq+C+++++++p+
    CCE28328.1 196 NLGKTATHEVGHWFGLMHTFEGEDcggrgdhiddtpaqasSSQGCPTGRDSCPD 249
                   556799***************98899999**********99*******999987 PP

>> Reprolysin_2  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3   2.6e-06    0.0052     130     160 ..     202     232 ..     198     282 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.6e-06
  Reprolysin_2 130 aHEvGHaFGatHdndgssasegveenaatsv 160
                    HEvGH FG  H+++g+ +  ++++  +t +
    CCE28328.1 202 THEVGHWFGLMHTFEGEDCGGRGDHIDDTPA 232
                   6****************77777776666643 PP

>> Reprolysin_4  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   3.6e-06    0.0072     139     166 ..     201     248 ..     186     282 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.6e-06
  Reprolysin_4 139 fAHEiGHtfGaaHdls....................degeglssktee 166
                     HE+GH fG+ H+ +                    ++g+++    ++
    CCE28328.1 201 ATHEVGHWFGLMHTFEgedcggrgdhiddtpaqassSQGCPTGRDSCP 248
                   57**************87777777777777777777677777555443 PP

>> Peptidase_M10  Matrixin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.6e-06     0.013      73     126 ..      98     214 ..      81     219 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.6e-06
                    ESEEEBSSSSTTTTEEEEETTS-EESSTS-.................................................................. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................. RF
  Peptidase_M10  73 vlahafapgeglggdihfdddeqWtlgeekv................................................................. 103
                    vl  ++ap     g +  +++ +Wt++ + +                                                                 
     CCE28328.1  98 VLDETYAP----MGISFVHKNTSWTVQPSWAmdhdeedmkrslrqgsyrdlnlyflralagpagtlgycnfpgavapasrlfymdgctlhvgsvpg 189
                    55555555....555556666667766554466666777777888888888888888888888888888888888888888888888888888888 PP

                    ..SSSEEHHHHHHHHHHHHTTBESX CS
                    ..xxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M10 104 ..eqgvslflVaaHEiGHalGLeHs 126
                        g++l   a+HE+GH  GL H+
     CCE28328.1 190 gpLIGFNLGKTATHEVGHWFGLMHT 214
                    877899******************7 PP

>> DUF4953  Met-zincin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   1.4e-05     0.028      12      33 ..     196     217 ..     190     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
     DUF4953  12 llrfvvaHEvGhtLGLrhNfaA 33 
                  l   ++HEvGh +GL+h f +
  CCE28328.1 196 NLGKTATHEVGHWFGLMHTFEG 217
                 5667899***********9987 PP

>> Peptidase_M66  Peptidase M66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.8   9.6e-05      0.19     187     214 ..     193     219 ..     154     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.6e-05
  Peptidase_M66 187 tgdatltgefiHEqGHalGLpHylagea 214
                    +g  +l+++  HE+GH +GL H   ge+
     CCE28328.1 193 IG-FNLGKTATHEVGHWFGLMHTFEGED 219
                    44.77888999***********999865 PP

>> Peptidase_M54  Peptidase family M54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.7    0.0003      0.59     147     166 ..     199     220 ..     196     226 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0003
                    HHHHHHHHHHTT----S-..TS CS
  Peptidase_M54 147 kevlhelGhlyGLshCke..dC 166
                    k  +he+Gh +GL h  e  dC
     CCE28328.1 199 KTATHEVGHWFGLMHTFEgeDC 220
                    7789***********8765566 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2306.63
//
Query:       CCE28329.1  [L=957]
Description: uncharacterized protein CPUR_01804 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-25   88.1   4.4    4.7e-25   88.1   4.4    2.9  2  FUSC_2           Fusaric acid resistance protein-like
    6.2e-05   22.0   8.1      0.016   14.1   3.8    3.2  3  ALMT             Aluminium activated malate transporter
  ------ inclusion threshold ------
      0.025   14.8   0.3       0.71   10.1   0.0    3.3  3  Phage_holin_Dp1  Putative phage holin Dp-1
       0.46    8.9  20.5       0.19   10.2   2.3    4.5  4  FUSC             Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   8.6       2.6   1.2e+04      42      98 ..     105     174 ..      59     209 .. 0.52
   2 !   88.1   4.4   1.1e-28   4.7e-25       9     127 .]     569     706 ..     555     706 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.6
      FUSC_2  42 GtvlGavlalllly............llpgnlalallvfllvfliafflkrny.alafifltllalllys 98 
                  ++ + ++++l+ +             l ++l+++++v  ++ l+ ++++r    l ++  tl  +++++
  CCE28329.1 105 AVAYAELVSILSMVtsvlvgsklglaTLAHTLVIIVFVGGAFGLMGWVKQRMNnPLVNVGSTLASIAIIA 174
                 4444444444433222322222222122233444455555555555555432223344444444444333 PP

  == domain 2  score: 88.1 bits;  conditional E-value: 1.1e-28
      FUSC_2   9 lglwrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgn.lalallvfllvfliaffl...krnyalafifltllalllyslaa.. 101
                 + ++rgeW l++++iv+s+t+gas+t+++ R++Gt+lGa+++++ + + +gn +al++l+++++fl ++++   ++ + +++++l +++  ly+++   
  CCE28329.1 569 YFHYRGEWGLLSFMIVCSMTVGASNTTGWSRFVGTFLGAAFSVVNWNVSQGNaVALIALGWCVSFLNFYLIvarGQAPLGRITLLAYNVSTLYAYSLtq 667
                 4469************************************************9**********999999774324556777777776555555554444 PP

      FUSC_2 102 ...gsgnpie.............ialhRlldvliGiliallv 127
                    + +n  +             i+ hR+  v+ Gil++l+v
  CCE28329.1 668 kleR-DN--DdddeggihplileIVKHRAMSVTTGILWGLIV 706
                 7642.22..23368**************************96 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0007       3.1     154     206 ..     198     250 ..     184     275 .. 0.82
   2 !   14.1   3.8   3.5e-06     0.016      11      89 ..     543     620 ..     536     640 .. 0.80
   3 ?    1.1   0.1      0.03   1.3e+02     145     180 ..     686     721 ..     683     758 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0007
        ALMT 154 tiaiGaliclivsifvfPiwaGedLhklvaknleklakslegcvdeyleekek 206
                 ++ +G++++  v+++++P++a ++L  ++ k    l ++l ++ +++l ++  
  CCE28329.1 198 MLGMGITSAAAVNLLIWPVFARSQLRVSMLKASTALGDVLTAVSASFLCDNVT 250
                 5679**************************99999999999998888765544 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 3.5e-06
        ALMT  11 vvfslkvGlaltLvsllyfl...rplykelgknavWailTVvvvlefsvGATlskGlnRalaTliAGglalgvselasssgk 89 
                 + f +kvGl ++L ++l fl   rpl   +   + W  l  ++v   +vGA    G  R+++T ++ ++ ++  ++++  g+
  CCE28329.1 543 ILFGIKVGLGSSLWAMLAFLpdtRPL--YFHYRGEWGLLSFMIVCSMTVGASNTTGWSRFVGTFLGAAFSVVNWNVSQ--GN 620
                 7899***************8322444..4677889******************************9999888777764..44 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.03
        ALMT 145 ielAvkRfltiaiGaliclivsifvfPiwaGedLhk 180
                 +e+  +R +++  G+l+ liv  +++P+ a +   +
  CCE28329.1 686 LEIVKHRAMSVTTGILWGLIVCRLIWPVSARQKYKE 721
                 677889**********************98665555 PP

>> Phage_holin_Dp1  Putative phage holin Dp-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00016      0.71       8      44 ..      47      83 ..      45      85 .. 0.96
   2 ?   -3.7   0.0       3.4   1.5e+04       3      21 ..     190     208 ..     189     209 .. 0.76
   3 ?    0.2   0.0       0.2   8.8e+02      46      60 ..     601     615 ..     556     618 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00016
  Phage_holin_Dp1  8 vlKwialvllPalatLvfalgkiynlpetelvVgtit 44
                     vlK ++ + ++ lat+ + l+  ++ p +  vV ti+
       CCE28329.1 47 VLKCTLAYTIASLATFAGPLSDFLGQPDGKHVVATIS 83
                     79**********************************8 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.4
  Phage_holin_Dp1   3 nktydvlKwialvllPala 21 
                       kt +vlK + + +  a+a
       CCE28329.1 190 QKTTQVLKMLGMGITSAAA 208
                      7999999998887776665 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.2
  Phage_holin_Dp1  46 iatFLGvilgvstsn 60 
                      ++tFLG+   v + n
       CCE28329.1 601 VGTFLGAAFSVVNWN 615
                      789999887776655 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3    0.0018         8     137     164 ..     201     228 ..     196     250 .. 0.77
   2 ?    0.9   0.1     0.029   1.3e+02     229     306 ..     392     468 ..     382     473 .. 0.67
   3 ?   10.2   2.3   4.2e-05      0.19      29      65 ..     576     612 ..     572     643 .. 0.90
   4 ?    3.5   0.1    0.0044        20     478     507 ..     692     721 ..     685     778 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0018
        FUSC 137 lGIvCaalVsalvfPrsvapalrarlra 164
                  GI +aa+V++l++P  ++ +lr ++ +
  CCE28329.1 201 MGITSAAAVNLLIWPVFARSQLRVSMLK 228
                 69******************99976543 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.029
        FUSC 229 lallallsslarllarlraeeaaavpelaallaelaal..eaaaaaealeaalaalrarlralrraleadadtaalllar 306
                 la +a l+ +++l a+ ++++++ + +l+++ a + ++  + + + ++ +++l+ l+   ra++     ++++++ll+ r
  CCE28329.1 392 LARVAALQHVYDLVAQRDSSHDGDHVALEQIAASCGHFsfSLQSFGQEMAKYLDMLEGLQRATDD---SERSWEWLLWWR 468
                 56677888888999999999999999999999999997554433444444444444444444443...345888888876 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 4.2e-05
        FUSC  29 wAmtTVfiVsqPlsGavlsKslyRllGTllGaaaavl 65 
                 w +++ +iV++ ++Ga+   ++ R++GT+lGaa++v+
  CCE28329.1 576 WGLLSFMIVCSMTVGASNTTGWSRFVGTFLGAAFSVV 612
                 889999*****************************97 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.0044
        FUSC 478 salAlllGvllaavvfrlirpvsaewlarr 507
                 +a+++  G+l  ++v rli+pvsa+++++ 
  CCE28329.1 692 RAMSVTTGILWGLIVCRLIWPVSARQKYKE 721
                 567777777777777777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 6735.61
//
Query:       CCE28330.1  [L=267]
Description: uncharacterized protein CPUR_01805 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-05   24.4   0.1    4.9e-05   23.4   0.1    1.5  1  Cerato-platanin  Cerato-platanin


Domain annotation for each model (and alignments):
>> Cerato-platanin  Cerato-platanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   2.7e-09   4.9e-05      50     118 ..      55     130 ..      32     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.7e-09
  Cerato-platanin  50 aiagwnsa.ncGt.cykityngktiyvlaidaagaGfniakkamdeltngq.aae....lGrvdaeveevalsdcg 118
                       +a w  + +c + c +++y+++ +y+l id++ +  +++ +a + l  g+ a++     G v+ ++++va+s+c+
       CCE28330.1  55 RVAYWPQPvDCDNiCVQVEYEDRRVYLLRIDQSEGAHDMSYDAWNYLYTGHsATDkptaGGAVQMKYRNVAASKCR 130
                      57778665378644*******************************99655414432222699*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2015.40
//
Query:       CCE28331.1  [L=217]
Description: uncharacterized protein CPUR_01806 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-41  139.0   1.6    1.2e-40  138.6   1.6    1.2  1  Phospholip_A2_3  Prokaryotic phospholipase A2


Domain annotation for each model (and alignments):
>> Phospholip_A2_3  Prokaryotic phospholipase A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   1.6   6.8e-45   1.2e-40       1     111 []      43     150 ..      43     150 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 6.8e-45
  Phospholip_A2_3   1 tdkllfstslkeFlkarnakaepseldwssdgCssspdkplgfeFlesCqrhdFgYrnykaqkrfteanrkridknfkkdlkkqCkkveklkkk 94 
                      td +lf+++l++F++ r+++ +p+ l+w+sdgC+ +pd+p+gf+++++C+rhdFgY+ny+ q+rft++n+krid+nfk+dl++qC+        
       CCE28331.1  43 TDAILFNIDLPKFVDDRDHQ-RPKYLVWTSDGCTDAPDNPFGFNYEPACYRHDFGYNNYRPQGRFTKDNKKRIDDNFKDDLHYQCRG--VRGAW 133
                      899****************9.9*****************************************************************..55589 PP

  Phospholip_A2_3  95 aCkaladvyyeavrafg 111
                      aC+ala+vyy avrafg
       CCE28331.1 134 ACRALANVYYFAVRAFG 150
                      ***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1694.10
//
Query:       CCE28332.1  [L=534]
Description: related to hard surface induced protein 3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-31  108.9  34.0    3.4e-31  108.5  34.0    1.1  1  Acyl_transf_3  Acyltransferase family


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5  34.0   1.9e-35   3.4e-31       2     333 ..      98     499 ..      97     505 .. 0.90

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 1.9e-35
                    xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxx...........xxxxxxxxx RF
  Acyl_transf_3   2 aylDllRgiAillVvf.lHaliayspdagrgspiqasqssqi..............aflggfgvplFFllSGffla...........amlyrrrgl 71 
                    aylD+lRg+A+llV + +H+l++++ d   +++i+++++                 +  g+ +v++FF+lSG++l+           + +     l
     CCE28332.1  98 AYLDGLRGFAALLVYWhHHVLWVHNMDRLAQNGIFENGFGYErnyyfaslpgirifFSGGHLAVSVFFVLSGYVLSikpwrlieqdnDIGGLADHL 193
                    79**************999*******************9999*************9999***************************999999999* PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3  72 sklikrRilrlliplliwllliillialvaghiqa.nasanvtlfdet...........kglmfllfefpatghlWfLwalfvlylllplllrllr 155
                    +++++rR++rl++p+ +++++++++++l+  +    n++++++    +            +  +   +  +  h W+++++f ++++++  l +l 
     CCE28332.1 194 RSAVFRRWIRLFLPVAATMFAYATSWHLFGLWVDRaNPQGSWLDEM-WflycdfknfsfVFKDGGVPWLSYSIHVWSIPVEFRGSMVVYASLLALS 288
                    ***************************9988876504444444444.36*******9987888888899999************************ PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
  Acyl_transf_3 156 kvrkshlllllilllllslvfirhelfgpatsvgllplpsvlallfflfGalladaddrdrnlsrglkislllsllllalillalfgqtdg..... 246
                    +   + +l++ ++l+ ++  +   ++                 +++f++G+ll+ +d      ++   + +l  + +++++ ++++g++ g     
     CCE28332.1 289 RCTLKARLWCQLALIGYFMHVADGWY-----------------CAMFVAGMLLSHLDMLAAADRLPIFLTRLKPYKSVICYHFLILGVYLGgvpcq 367
                    *************************9.................***************************************************** PP

                    ...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......... RF
  Acyl_transf_3 247 ...............gglvasvliqsaslllvslgimllllllfalpsrsafk...llrylgkiSygiYliHlpllmllqkllrdw.......... 314
                                   ++l+++++ +++ ++++++++ ll+ ++     +++++   +++ylg+iS+++Yl+++pll+++++ l++           
     CCE28332.1 368 nrkieqlasqrgwylLSLLKPQAVFDYKWFYLFWAAVLLITAVSNISGLKRVFetrICQYLGRISFAFYLVQGPLLWTMGDRLYAAvgfvskahle 463
                    ***********************************************************************************9997666666666 PP

                    .....xxx.............xxxxxxxxxxxxxxxx RF
  Acyl_transf_3 315 .....gln.............lgevlllvlllvvsvi 333
                           n             l +vl  ++ll+++++
     CCE28332.1 464 hiphwV-NrlalprtgplgleLAFVLPQLFLLPATLC 499
                    554430.133344444445555566666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4227.98
//
Query:       CCE28333.1  [L=104]
Description: uncharacterized protein CPUR_01808 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 819.96
//
Query:       CCE28334.1  [L=438]
Description: related to alpha-1,6-mannosyltransferase HOC1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-12   46.3   0.1    1.7e-11   44.6   0.0    1.9  2  Gly_transf_sug  Glycosyltransferase sugar-binding region cont
  ------ inclusion threshold ------
       0.13   11.5   0.5       0.23   10.7   0.2    1.5  2  TcdA_TcdB       TcdA/TcdB catalytic glycosyltransferase domai


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   1.8e-15   1.7e-11      10      92 ..     104     184 ..      97     190 .. 0.83
   2 ?   -3.1   0.0       1.5   1.3e+04      19      52 ..     373     402 ..     366     413 .. 0.51

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.8e-15
  Gly_transf_sug  10 slakahpdyqvvvlskelekvrvaildlefllsdtpwfeeakkllplfialsDllRlaiLykyGGiYlDtDvivlkslrnsig 92 
                     +++ ++p+ ++ v+++  + v  +   +     + p + + + + +l i ++DllR+ iLy+ GGiY+D+Dv  +k++    +
      CCE28334.1 104 TWIAQNPQMRYEVITDYND-VTYVEQHFGPAGLNRPDIVDFYRSVKLRIIKADLLRYIILYAEGGIYTDIDVEAIKPF-HRFI 184
                     7999***********9988.66666666666666678888999999******************************99.4444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.5
  Gly_transf_sug  19 qvvvlskelekvrvaildlefllsdtpwfeeakk 52 
                     +v  ++k+++    a   l++ ++++ ++e++kk
      CCE28334.1 373 CVEQWDKDVD----AFEKLSEDAKKDIIVERLKK 402
                     5555666666....22222222222224444444 PP

>> TcdA_TcdB  TcdA/TcdB catalytic glycosyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   2.5e-05      0.23     201     221 ..     154     174 ..     153     177 .. 0.94
   2 ?   -3.8   0.0      0.67     6e+03     248     264 ..     234     250 ..     227     266 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.5e-05
                 HHHHHHHHHHHH-EEEE-TT- CS
   TcdA_TcdB 201 sDivRllvLkelGGlyldvDm 221
                 +D +R  +L+++GG+y+d+D+
  CCE28334.1 154 ADLLRYIILYAEGGIYTDIDV 174
                 599****************95 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.67
                 HHHHHHHHHCC-SSTT. CS
   TcdA_TcdB 248 raileailkykkgkaev 264
                 ++++e i+k+ k  a+ 
  CCE28334.1 234 MRLIERIMKWFKSVAQK 250
                 56666666665544442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:01.16
# Mc/sec: 1143.17
//
Query:       CCE28335.1  [L=174]
Description: uncharacterized protein CPUR_01810 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-13   50.2   7.7    2.7e-13   49.8   7.7    1.2  1  CFEM      CFEM domain


Domain annotation for each model (and alignments):
>> CFEM  CFEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   7.7   1.5e-17   2.7e-13       2      66 .]      20      86 ..      19      86 .. 0.94

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 1.5e-17
                TTTS-GGGTCGGG---TTSS.S-TT-HHHHH.H-HHHHHHHHHHHHHH--THHHH.HHHHHHHHHHH CS
        CFEM  2 lsalPkCaqdClaeavkkssgCakddtaCiC.tnaklqseitdCvtaaCtaeeal.aavnaasslCa 66
                ls+lP Ca +Cl++a+k+ s+Ca +d+aCiC + +k+q +++ C+ +aC+ + al +++ ++++lCa
  CCE28335.1 20 LSDLPGCAIPCLNDAIKQASTCATTDLACICrKFDKIQGAAAGCILGACGKDVALgKVLPVTQQLCA 86
                789*************88668**********999******************9999**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 1201.29
//
Query:       CCE28336.1  [L=396]
Description: uncharacterized protein CPUR_01811 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0025   17.4   0.2     0.0084   15.7   0.2    1.7  1  Glyco_transf_8  Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   4.7e-07    0.0084      89     227 ..     166     312 ..     154     336 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.7e-07
  Glyco_transf_8  89 lnylRlylpelfpkldkilylDaDvvvqgdlseLwdldlkgkvlaaved..............krfkkylnksepliaenfkpeacyFnaGvllf 169
                      ++ +l l+    + +ki +lD+D ++ ++++e++dl  ++++     d                        + + a   + + +  naG+l++
      CCE28336.1 166 DVLSKLNLWRE-TDWHKIAFLDSDAFPIRNIDEIFDLVPEQQCDKDALDaqdgavvgntkggeD-------MCNYVYAGVAQFSIDNINAGMLVL 252
                     57889999999.999*************************888877777999999966533322.......33333344444445667******* PP

  Glyco_transf_8 170 dldewrkenitetlikwlnlnekrtllklgdqdilnivfk...gkvkeldkkynvlglgy.e 227
                      ++ ++  ++ + + k+ + + +  +++ g +   n++       v++l+  +n l+ +y +
      CCE28336.1 253 KPNLDMHAKLLRAARKTEDYDMA--DMEQGVLKSKNAFAAdgpFPVYRLPAIWNALPEYYiK 312
                     *****************777777..8999888888888773333699999999999999952 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2662.71
//
Query:       CCE28337.1  [L=98]
Description: uncharacterized protein CPUR_01812 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.035   13.9   0.4      0.042   13.6   0.4    1.2  1  Hs1pro-1_N      Hs1pro-1 N-terminus
      0.035   14.4   4.6      0.097   13.0   1.3    2.8  2  HalX            HalX domain
        0.4   10.8   6.0        4.5    7.4   0.2    2.8  3  DUF1192         Protein of unknown function (DUF1192)
       0.47   10.6   7.5       0.18   11.9   2.0    2.1  2  TolA_bind_tri   TolA binding protein trimerisation
       0.56   10.3   9.7        4.7    7.4   0.7    2.2  2  Cep57_CLD_2     Centrosome localisation domain of PPC89


Domain annotation for each model (and alignments):
>> Hs1pro-1_N  Hs1pro-1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   1.2e-05     0.042     102     153 ..      22      73 ..      10      90 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
  Hs1pro-1_N 102 inrrewkRRlesLatkqieliailcedeeeeeetrgtaPvadlsasngvlar 153
                     ++k+Rle+L  + + ++  +  + +e  + +++ P+++l+++     r
  CCE28337.1  22 EAEADLKQRLEALRREVVTIVGNMSTETSEAMQLTAQNPTSNLHEQLNLAFR 73 
                 566789*************************************987655444 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.3   2.7e-05     0.097      38      62 ..      25      48 ..       8      56 .. 0.88
   2 ?    1.3   0.1      0.12   4.3e+02      19      50 ..      75      88 ..      62      95 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
        HalX 38 qeLearleelraqldetldelddad 62
                ++L++rle+lr+++ +++ ++++ +
  CCE28337.1 25 ADLKQRLEALRREVVTIVGNMST-E 48
                68******************998.3 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.12
        HalX 19 ravLeaekseaeLadseeYqeLearleelraq 50
                +a+L+ae                    +l++q
  CCE28337.1 75 VALLKAE------------------TGRLERQ 88
                4555555..................4444444 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.39   1.4e+03      35      43 ..      10      18 ..       6      25 .. 0.62
   2 ?    5.4   0.3    0.0051        18      23      37 ..      25      39 ..      23      51 .. 0.89
   3 ?    7.4   0.2    0.0013       4.5      28      43 ..      74      89 ..      72      91 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.39
     DUF1192 35 EIaRleaai 43
                 IaR+++  
  CCE28337.1 10 DIARVRELD 18
                588887643 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0051
     DUF1192 23 eELeerIalLeaEIa 37
                ++L++r ++L+ E+ 
  CCE28337.1 25 ADLKQRLEALRREVV 39
                79***********86 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0013
     DUF1192 28 rIalLeaEIaRleaai 43
                r+alL+aE  Rle+++
  CCE28337.1 74 RVALLKAETGRLERQL 89
                9************987 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.0   5.1e-05      0.18       4      51 ..      12      55 ..      11      60 .. 0.83
   2 ?    1.9   1.2     0.066   2.4e+02      18      50 ..      59      91 ..      48      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.1e-05
  TolA_bind_tri  4 drvarLErilearsqlllelqqqlealqqelreLRGqiEelqyqleql 51
                   +rv +L+r+lea      +l q+leal++e+ ++ G +   + +  ql
     CCE28337.1 12 ARVRELDRKLEA----EADLKQRLEALRREVVTIVGNMSTETSEAMQL 55
                   5999******88....89*************99999887666666555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.066
  TolA_bind_tri 18 qlllelqqqlealqqelreLRGqiEelqyqleq 50
                   +   +l++ql+   + ++ L+ ++ +l+ ql+ 
     CCE28337.1 59 NPTSNLHEQLNLAFRRVALLKAETGRLERQLRL 91
                   556789999999999999999999999998875 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.5    0.0014       4.9      37      60 ..      14      37 ..       7      56 .. 0.81
   2 ?    7.4   0.7    0.0013       4.7      38      63 ..      66      91 ..      61      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0014
  Cep57_CLD_2 37 lrqLgvAyeelneLkaevealrkE 60
                 +r L +++e   +Lk+++ealr+E
   CCE28337.1 14 VRELDRKLEAEADLKQRLEALRRE 37
                 688999999999**********99 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0013
  Cep57_CLD_2 38 rqLgvAyeelneLkaevealrkELke 63
                  qL  A++++  Lkae  +l+++L+ 
   CCE28337.1 66 EQLNLAFRRVALLKAETGRLERQLRL 91
                 79999*****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1216  (0.0678231); expected 358.6 (0.02)
Passed bias filter:                      718  (0.0400469); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 728.76
//
Query:       CCE28338.1  [L=216]
Description: uncharacterized protein CPUR_01813 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-27   95.2   8.0    3.5e-27   95.0   8.0    1.0  1  Dor1      Dor1-like family


Domain annotation for each model (and alignments):
>> Dor1  Dor1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   8.0   1.9e-31   3.5e-27       2     179 ..      25     214 ..      24     216 .] 0.95

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 1.9e-31
        Dor1   2 selsskpleelek.epelLaeeaeeilaqiqdLarknyktlidaaealeairqelediraqledLvlklpkLteectrfskkaeeisek........rk 91 
                 ++l   ++++ +  e + + + ++ +  +iq+L++k++ +l+++a  ++++ q l++++    dL +++p L+ee + fs++++++ e         rk
  CCE28338.1  25 DQLAGLTVDAVQNsEFQIISQASNSLFLSIQALSKKSHTQLVQSAASHSSLCQALPNLARRASDLNQRVPWLDEESELFSTELNKSKECkensiitdRK 123
                 677888888888878888999999********************************************************9999988877889***9** PP

        Dor1  92 enkllldkheqllellelPqlmdrcirng..yydealeLeayvsrLkqristnpviqsiaaeveetvqelleqLiqkLrsp.lqLaeclrv 179
                  +  ll+++e+l+++ e+P l+ ++i+ +  ++++  +L a+v++L++++ ++p+i si  e++++v+++++ Li+ L+   l+La+ lr+
  CCE28338.1 124 RALRLLRNSERLVDVMEIPPLLLTAINSSsvNHSSFIDLYAHVQQLASLHASSPLIASIKHEADAAVRQMAADLIATLKVAnLKLATGLRT 214
                 ***************************9999************************************************755********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1666.27
//
Query:       CCE28339.1  [L=137]
Description: uncharacterized protein CPUR_01814 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-33  116.8   8.0    1.1e-33  116.6   8.0    1.0  1  TRAM_LAG1_CLN8  TLC domain


Domain annotation for each model (and alignments):
>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   8.0   6.3e-38   1.1e-33      28     161 ..       5     133 ..       1     136 [. 0.94

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 6.3e-38
  TRAM_LAG1_CLN8  28 elwegy.perilgathfllkayyllalgYfiydllvlllyekkrkdfvemliHhiitlvllvlsyvrnlgrvglvvlllhelsdpflnlrkilsy 121
                     e+++++ +eri+g+t+  ++ ++ la+gYf++dl+v+ l+ + ++   + l+H++++l+++++++ r++++++ ++++l+els+pfln+++++++
      CCE28339.1   5 ERASMTwEERIWGYTGGTSM-IQGLAAGYFVWDLVVTSLNLTVFG--LGTLAHALAALIVFSFGF-RPFVNYYGCIFILWELSTPFLNIHWFMDK 95 
                     45555559********9999.************************..9*****************.***************************** PP

  TRAM_LAG1_CLN8 122 lkkkskssklvlfngllfllsFfvcRlvllpylillsild 161
                     l ++ ++s  +l+ng+l+l++Ff+cRlv+++y+++ +i++
      CCE28339.1  96 L-DM-TGSQAQLYNGFLLLFTFFSCRLVYGTYQSVQYIWR 133
                     *.*9.999*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1007.63
//
Query:       CCE28340.1  [L=1091]
Description: related to cytoskeleton assembly control protein SLA1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-36  122.2   8.7    1.3e-12   47.3   0.5    4.1  4  SH3_9     Variant SH3 domain
    2.8e-35  119.7   6.8    1.2e-12   47.2   0.1    4.3  4  SH3_1     SH3 domain
    9.8e-34  115.0   0.0    1.8e-33  114.2   0.0    1.4  1  SHD1      SLA1 homology domain 1, SHD1
    1.2e-25   88.9   0.3    4.2e-08   32.7   0.0    4.5  4  SH3_2     Variant SH3 domain
    4.2e-06   26.6   0.0    9.7e-06   25.5   0.0    1.5  1  SAM_4     SAM domain (Sterile alpha motif)
     0.0019   18.4   7.6      0.024   14.9   0.9    3.5  3  SH3_3     Bacterial SH3 domain
      0.002   18.1   0.1      0.033   14.3   0.0    2.8  3  SH3_10    SH3 domain


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.5   5.3e-16   1.3e-12       1      49 []       9      65 ..       9      65 .. 0.89
   2 !   37.0   0.2   8.9e-13   2.3e-09       1      48 [.      75     122 ..      75     123 .. 0.98
   3 !   40.6   0.1   6.5e-14   1.7e-10       2      49 .]     374     424 ..     373     424 .. 0.92
   4 ?   -0.9   0.0      0.61   1.6e+03      13      26 ..     630     643 ..     628     649 .. 0.82

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 5.3e-16
       SH3_9  1 AlypyepreddeLsLqrGDvitviee.sedgWlegs......l.tGrtGlvPanyve 49
                A y+yepr d eL + +GD ++v+++  +dgW++++        ++  GlvP nyve
  CCE28340.1  9 ATYDYEPRADGELAITEGDLLYVLDKgNNDGWWRAKkkagveDeEEPVGLVPNNYVE 65
                78**********************55489******97676653688**********7 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 8.9e-13
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsltGrtGlvPanyv 48 
                 A+y+y+ + d+eLs+++  ++ v + s+++W+++ l+ ++G+vPany+
  CCE28340.1  75 AIYDYTRQTDEELSFSEEAILQVYDTSDPDWILVGLDDEYGFVPANYI 122
                 89****99999************************************8 PP

  == domain 3  score: 40.6 bits;  conditional E-value: 6.5e-14
       SH3_9   2 lypyepreddeLsLqrGDvitviee.sedgWlegsl..tGrtGlvPanyve 49 
                 ly++ ++ dde  + +GD ++vi++  ++ W+++++  +G+ G+vP++yve
  CCE28340.1 374 LYDFMAQGDDEVTVAAGDEVLVIDDsKSEEWWQVTRlkNGKEGVVPSSYVE 424
                 8**********************66269*******668************7 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.61
       SH3_9  13 LsLqrGDvitviee 26 
                 L L++GD+i v+++
  CCE28340.1 630 LGLREGDIIKVMRN 643
                 679******99876 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.2   2.1e-13   5.4e-10       2      40 ..       9      48 ..       8      61 .. 0.87
   2 !   32.0   0.1   2.7e-11   6.9e-08       1      48 []      74     119 ..      74     119 .. 0.97
   3 !   47.2   0.1   4.6e-16   1.2e-12       3      48 .]     374     420 ..     373     420 .. 0.99
   4 ?    2.6   0.0     0.042   1.1e+02      14      29 ..     630     645 ..     624     649 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 2.1e-13
                ESSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEEEETTS CS
       SH3_1  2 AlYDYeaeesdELsfkkGDviivleksed.gWwkgrlkgt 40
                A YDYe++ ++EL +++GD + vl+k ++ gWw+++ k +
  CCE28340.1  9 ATYDYEPRADGELAITEGDLLYVLDKGNNdGWWRAKKKAG 48
                99*************************999******9986 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 2.7e-11
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 +A+YDY+ ++++ELsf +  +++v + s+ +W  + l++  + G++P+
  CCE28340.1  74 RAIYDYTRQTDEELSFSEEAILQVYDTSDPDWILVGLDD--EYGFVPA 119
                 7*************************************7..8*****6 PP

  == domain 3  score: 47.2 bits;  conditional E-value: 4.6e-16
                 SSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEEEETTSTEEEEEEG CS
       SH3_1   3 lYDYeaeesdELsfkkGDviivleksed.gWwkgrlkgtgkeGliPs 48 
                 lYD++a+ +dE++   GD++ v+++s++ +Ww++ +  +gkeG +Ps
  CCE28340.1 374 LYDFMAQGDDEVTVAAGDEVLVIDDSKSeEWWQVTRLKNGKEGVVPS 420
                 8*********************************************8 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.042
                 XEBSTTEEEEEEEECS CS
       SH3_1  14 LsfkkGDviivlekse 29 
                 L +++GD+i+v    +
  CCE28340.1 630 LGLREGDIIKVMRNLD 645
                 889********87665 PP

>> SHD1  SLA1 homology domain 1, SHD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.0   6.9e-37   1.8e-33       2      67 .]     487     552 ..     486     552 .. 0.97

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 6.9e-37
        SHD1   2 kskPdpakvRtWtDrtgsFkVeAeflglkdgkirLhkvnGvkiaVpvekmskeDleyvekvtgksl 67 
                 ks+P+++kvRtWtDr+gsF+V+A+flglkd ki+Lhk+nGvkiaVp++kms++Dleyvek+tg sl
  CCE28340.1 487 KSRPNSSKVRTWTDRSGSFSVDAQFLGLKDSKIHLHKLNGVKIAVPIAKMSRDDLEYVEKMTGISL 552
                 689***********************************************************9885 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.6e-11   4.2e-08       4      56 ..       9      66 ..       6      67 .. 0.88
   2 !   17.5   0.0   9.7e-07    0.0025       2      54 ..      73     122 ..      72     125 .. 0.95
   3 !   26.3   0.0   1.7e-09   4.4e-06      10      56 ..     379     425 ..     371     426 .. 0.87
   4 !    7.0   0.0    0.0017       4.5       9      31 ..     623     651 ..     617     665 .. 0.71

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.6e-11
                ESS-B-SCGCCB--B-TTEEEEEE..EEE.ECTTEEEEEE.CCCE......EEEEGCGEEE CS
       SH3_2  4 aiedyvgedkseLsfkkGdvikvlslgsk.dsdgwwegev.gGrv......GlfPsslvee 56
                a+ dy++   +eL +++Gd+++vl   +k ++dgww++ +  G+       Gl+P+++vee
  CCE28340.1  9 ATYDYEPRADGELAITEGDLLYVL---DKgNNDGWWRAKKkAGVEdeeepvGLVPNNYVEE 66
                667999*99***************...66266699***9988998999999*********8 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 9.7e-07
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEECCCEEEEEGCGE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegevgGrvGlfPsslv 54 
                 +rai dy+++  +eLsf +  +++v+   ++++++w+++  +  +G++P ++ 
  CCE28340.1  73 ARAIYDYTRQTDEELSFSEEAILQVY---DTSDPDWILVGLDDEYGFVPANYI 122
                 699***********************...********************9986 PP

  == domain 3  score: 26.3 bits;  conditional E-value: 1.7e-09
                 SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCGEEE CS
       SH3_2  10 gedkseLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPsslvee 56 
                 ++  +e +  +Gd + v+   +++s++ww++++  +G+ G++Pss+ve+
  CCE28340.1 379 AQGDDEVTVAAGDEVLVI--DDSKSEEWWQVTRlkNGKEGVVPSSYVEI 425
                 56666677889*******..9999*******999*************96 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0017
                 -SCGCCB--B-TTEEEEEE........EE CS
       SH3_2   9 vgedkseLsfkkGdvikvls......lgs 31 
                 +++  + L +++Gd+ikv +      +++
  CCE28340.1 623 NATILRTLGLREGDIIKVMRnldskfGRE 651
                 55555669***********7766665333 PP

>> SAM_4  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   3.8e-09   9.7e-06       9      67 ..     586     643 ..     577     654 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.8e-09
       SAM_4   9 sewiqffkeagipaglavnyavsfvdnriqknmlldlskeimnelgitvvgdiiailkh 67 
                  +w qff    +p gl   ya +f  + ++ ++l d++  i+  lg+   gdii +++ 
  CCE28340.1 586 HDWFQFFLSCDVPVGLCERYAQAFFKDSMDESVLPDVNATILRTLGLR-EGDIIKVMRN 643
                 58********************************************97.6*****9986 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4     0.085   2.2e+02      20      54 ..      24      64 ..      22      65 .. 0.75
   2 ?    3.3   0.0     0.041     1e+02      27      54 ..      97     122 ..      88     123 .. 0.74
   3 !   14.9   0.9   9.3e-06     0.024      18      55 .]     386     424 ..     380     424 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.085
       SH3_3 20 pyGekVevleetgggeWykvrtddgte......Gwvssgyl 54
                + G+ + vl++ ++++W++ ++  g e      G v + y+
  CCE28340.1 24 TEGDLLYVLDKGNNDGWWRAKKKAGVEdeeepvGLVPNNYV 64
                567888899*****99***9777776656666677777776 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.041
       SH3_3  27 vleetgggeWykvrtddgteGwvssgyl 54 
                 v + ++  +W+ v  dd + G+v + y+
  CCE28340.1  97 VYDTSDP-DWILVGLDDEY-GFVPANYI 122
                 5444444.4****888888.****9997 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 9.3e-06
       SH3_3  18 tlpyGekVevleetgggeWykv.rtddgteGwvssgyls 55 
                 t+ +G++V v+++++ +eW++v r  +g+eG v s+y++
  CCE28340.1 386 TVAAGDEVLVIDDSKSEEWWQVtRLKNGKEGVVPSSYVE 424
                 899****************************99999986 PP

>> SH3_10  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.7   9.6e+03      24      45 ..      19      40 ..      17      50 .. 0.69
   2 ?   -0.4   0.0      0.48   1.2e+03      16      59 ..      74     119 ..      67     122 .. 0.77
   3 !   14.3   0.0   1.3e-05     0.033      23      59 ..     382     420 ..     336     425 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.7
      SH3_10 24 aevsiekgeevtLldnsdrekW 45
                 e  i++g+ + +ld  ++  W
  CCE28340.1 19 GELAITEGDLLYVLDKGNNDGW 40
                5788999999988887666655 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.48
      SH3_10  16 eALcdykqa...evsiekgeevtLldnsdrekWkVqtssGaemtvPg 59 
                 +A+ dy+ +   e s++++  +++ d sd+  W +   + +   vP+
  CCE28340.1  74 RAIYDYTRQtdeELSFSEEAILQVYDTSDPD-WILVGLDDEYGFVPA 119
                 56667754444499999999*********97.988877777777775 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 1.3e-05
      SH3_10  23 qaevsiekgeevtLldnsdrek.WkVqtss.GaemtvPg 59 
                 ++ev++  g+ev + d s+ e+ W+V++ + G+e  vP+
  CCE28340.1 382 DDEVTVAAGDEVLVIDDSKSEEwWQVTRLKnGKEGVVPS 420
                 569*********9999988765279*99888*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1091 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 7297.55
//
Query:       CCE28341.1  [L=479]
Description: RGB-1 protein phosphatase 2A regulatory B subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-13   49.9   3.3       0.12   13.3   0.2    6.6  7  WD40         WD domain, G-beta repeat
     0.0071   16.6   0.2        5.4    7.4   0.0    3.8  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0012        11      13      36 ..      32      55 ..      11      57 .. 0.79
   2 !    6.8   0.0    0.0015        14      22      38 .]     104     119 ..      71     119 .. 0.79
   3 !   12.5   0.1   2.4e-05      0.21       9      38 .]     186     215 ..     178     215 .. 0.81
   4 ?    2.3   0.0      0.04   3.6e+02      14      36 ..     241     264 ..     231     266 .. 0.70
   5 !   13.3   0.2   1.3e-05      0.12      11      38 .]     297     323 ..     289     323 .. 0.89
   6 ?    1.4   0.0     0.077   6.9e+02      16      37 ..     359     380 ..     331     380 .. 0.87
   7 ?   -3.6   0.0         2   1.8e+04      13      26 ..     453     466 ..     449     470 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0012
                EEEEEEETTSSEEEEEETTSEEEE CS
        WD40 13 vtslafspdgawlasGsdDgtvri 36
                ++ + f++ g++la+G++ g v +
  CCE28341.1 32 ISTVEFDHTGNYLATGDKGGRVVL 55
                57788***********98777766 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0015
                 SSEEEEEETTSEEEEEE CS
        WD40  22 gawlasGsdDgtvriWd 38 
                 +++l+s   D+t+++W+
  CCE28341.1 104 SHYLLSTN-DKTIKLWK 119
                 45588666.*******6 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 2.4e-05
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +H  +++s+++++dg  ++s sdD  + +W+
  CCE28341.1 186 AHaYHINSISVNSDGETFIS-SDDLRINLWN 215
                 78666*************96.66*******8 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.04
                 EEEEEETTSSE..EEEEETTSEEEE CS
        WD40  14 tslafspdgaw..lasGsdDgtvri 36 
                 t+  f+p+g    + ++s +gtv++
  CCE28341.1 241 TAAEFHPHGCNwfMYASS-KGTVKL 264
                 555555555555556899.****98 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 1.3e-05
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 ss+++++fs+dg++++ + d  tv+iWd
  CCE28341.1 297 SSISDVRFSHDGRYIL-SRDYLTVKIWD 323
                 4589999*********.799*******9 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.077
                 EEEETTSSEEEEEETTSEEEEE CS
        WD40  16 lafspdgawlasGsdDgtvriW 37 
                 + fs d + +++Gs++++ +i+
  CCE28341.1 359 VVFSGDAKNVMTGSYNNNFMIY 380
                 55999*********99998886 PP

  == domain 7  score: -3.6 bits;  conditional E-value: 2
                 EEEEEEETTSSEEE CS
        WD40  13 vtslafspdgawla 26 
                 + +++++p  + +a
  CCE28341.1 453 ILHMSWHPFEDSIA 466
                 66788888877765 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00061       5.4      40      90 ..      31      98 ..      22     100 .. 0.80
   2 ?    1.1   0.0     0.054   4.9e+02      33      72 ..     232     272 ..     188     284 .. 0.78
   3 ?   -3.0   0.0         1   9.2e+03      40      55 ..     298     313 ..     295     339 .. 0.65
   4 ?    2.7   0.0     0.017   1.5e+02      38      60 ..     450     472 ..     435     477 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00061
  ANAPC4_WD40 40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek.................avtclgWg 90
                  ++ +++ + g+ La + + g+v l++ +++k   +++ ++e                  ++++++W+
   CCE28341.1 31 IISTVEFDHTGNYLATGDKGGRVVLFERNETKKSCEYKFHTEFqshepefdylksleieeKINKIKWC 98
                 588999********************999988877777776555667788888888888888888886 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.054
  ANAPC4_WD40  33 eedkedsevrsLaWkpdg.klLavaysdgevrlldaesgkv 72 
                  + ++  + +++ +++p g + ++ a s+g+v+l d+ +  +
   CCE28341.1 232 NMEELTEVITAAEFHPHGcNWFMYASSKGTVKLADMRESAL 272
                  45566777889999999967899999*******99887655 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1
  ANAPC4_WD40  40 evrsLaWkpdgklLav 55 
                  +++++++++dg+ +  
   CCE28341.1 298 SISDVRFSHDGRYILS 313
                  5777888888887643 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.017
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdg 60 
                  ++++ +++W+p +  +a+a  ++
   CCE28341.1 450 NKKILHMSWHPFEDSIAIAATNN 472
                  689999***********999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3442.44
//
Query:       CCE28342.1  [L=230]
Description: related to UDP N-acetylglucosamine transporter (MNN2) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-60  205.0   3.8    1.7e-60  204.8   3.8    1.0  1  UAA             UAA transporter family
     0.0038   17.4  12.8       0.77    9.9  12.0    2.9  2  EamA            EamA-like transporter family
     0.0045   16.2   5.6      0.011   15.0   5.6    1.6  1  Nuc_sug_transp  Nucleotide-sugar transporter
  ------ inclusion threshold ------
      0.024   14.9   3.7        0.8   10.0   0.1    2.1  2  DUF996          Protein of unknown function (DUF996)
      0.032   14.4   0.2      0.089   12.9   0.1    1.8  2  DUF4079         Protein of unknown function (DUF4079)
       0.23   11.6   3.1       0.64   10.1   3.1    1.6  1  Arv1            Arv1-like family


Domain annotation for each model (and alignments):
>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.8   3.8   5.5e-64   1.7e-60     104     300 ..       1     209 [.       1     211 [. 0.96

  Alignments for each domain:
  == domain 1  score: 204.8 bits;  conditional E-value: 5.5e-64
         UAA 104 milGililgkrYsllqylsvllltlGviiftllsakdk...kedskeslnkfllGiallvlallldavlglvqeklykkygkhskealfyshllslplf 199
                 mi+G l +gk+Ys +q l+v++l+ Gv+i+++++a++k   +++ ++++  + +G+++l++a++l+a++gl++e++y+ yg ++ke++fysh+lslplf
  CCE28342.1   1 MIAGYL-NGKKYSRVQALAVMFLSCGVVIAAWSDAQEKskiASNGNNAHPIMNTGLLILFFAQVLSAIMGLYTEATYRLYGPQWKENMFYSHMLSLPLF 98 
                 777765.67**************************9998887777788888999********************************************* PP

         UAA 200 lllqgellsavkflsesedval..........lslpsklfylllnvltqyvcikgVlilisefgaltvtlvltlRKfvslllSillFknpltlqhlvgt 288
                 l +  +++++++ +s+se++++           ++p +l+yl lnv+tqy+ci+gV++l+++++altvt+vl++RK+vslllSi+lF+n l++ +l+g+
  CCE28342.1  99 LPFLPSMIRNFNSMSQSEPLKIsmpwlpiiaePKVPGQLVYLGLNVITQYACIRGVNLLAAKSSALTVTIVLNVRKLVSLLLSIWLFDNSLAYGTLMGA 197
                 *9999***************************9****************************************************************** PP

         UAA 289 llVflglllysy 300
                 ++Vf++ +ly++
  CCE28342.1 198 VIVFGAGALYTL 209
                 ********9986 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.3   0.00068         2      25      89 ..       8      72 ..       2      76 .. 0.81
   2 !    9.9  12.0   0.00026      0.77       2     131 ..      53     203 ..      52     209 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00068
        EamA 25 lrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkkt 89
                 +k+s +++++v+fl +g++  +++  +e+++   + ++   ++ +gll  ++a++l  +   +t
  CCE28342.1  8 GKKYSRVQALAVMFLSCGVVIAAWSDAQEKSKIASNGNNAHPIMNTGLLILFFAQVLSAIMGLYT 72
                589999**************************777777777778888888888888766655555 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00026
        EamA   2 lgillallaalfwaiyfvlskillrkvspl..tltfvrfliagillliiallkegklaklslkd................wlll.lllgl..lgtvlaf 79 
                  g+l+++ a +++ai+++++ +++r + p+  +  f++ +++  l+l++++   ++++++s+++                +    ++lgl  +   ++ 
  CCE28342.1  53 TGLLILFFAQVLSAIMGLYTEATYRLYGPQwkENMFYSHMLSLPLFLPFLPSMIRNFNSMSQSEplkismpwlpiiaepkVPGQlVYLGLnvITQYACI 151
                 689999***********************9888999*************77777777333333334444555555555554444244443114444444 PP

        EamA  80 llffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillG 131
                    + +  k+sa ++++++++  +++l+ls++l+  +l   +l+g+v+++ +
  CCE28342.1 152 RGVNLLAAKSSALTVTIVLNVRKLVSLLLSIWLFDNSLAYGTLMGAVIVFGA 203
                 4456666677888************************************975 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   5.6   3.6e-06     0.011     131     315 .]       7     208 ..       1     208 [. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.6e-06
  Nuc_sug_transp 131 LkrklskkqWlslllLvaGvalvqlkqkeseesekaaaaakeensvlGliavlaacllsgfaGvYfekiLkdsnvslWirni...qlallsiila 222
                      ++k s+ q l++++L  Gv++  +++++++++  ++ ++ +    +Gl  +  a +ls++ G+Y e   +    + W  n+   ++  l ++l 
      CCE28342.1   7 NGKKYSRVQALAVMFLSCGVVIAAWSDAQEKSKIASNGNNAHPIMNTGLLILFFAQVLSAIMGLYTEATYRLY-GPQWKENMfysHMLSLPLFLP 100
                     5799*********************9988876666555555566668********************998765.577999994445666778899 PP

  Nuc_sug_transp 223 lltvllkdgskisekGffkGydlvvwvvvllq..avGGlv...vavvvkyaD....nil..kgfatslaiilst......vasvllldlkitllF 300
                     +l  ++++++++s++  +k   ++ w+ ++ +    G lv   + v+ +ya     n+l  k+ a +++i+l++      + s+ l+d +++   
      CCE28342.1 101 FLPSMIRNFNSMSQSEPLKI--SMPWLPIIAEpkVPGQLVylgLNVITQYACirgvNLLaaKSSALTVTIVLNVrklvslLLSIWLFDNSLAYGT 193
                     999999*****999998885..4445544443113454443335788899844444888335555666788753332222788999999999999 PP

  Nuc_sug_transp 301 llGallviaavflYs 315
                     l+Ga++v  a  lY+
      CCE28342.1 194 LMGAVIVFGAGALYT 208
                     999999999988885 PP

>> DUF996  Protein of unknown function (DUF996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00027       0.8      39     108 ..      16      89 ..      11      94 .. 0.90
   2 ?    5.9   0.6     0.005        15      48     117 ..     142     210 ..     126     212 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00027
      DUF996  39 alvvailalllvlgalatalelpgleeaas....lilllllvliiayvlliisavflkksyellgkrtgvklFe 108
                 al+v++l  ++v+ a+  a e+ +++ +      ++ + ll+l++a vl  i +++    y+l g + ++++F 
  CCE28342.1  16 ALAVMFLSCGVVIAAWSDAQEKSKIASNGNnahpIMNTGLLILFFAQVLSAIMGLYTEATYRLYGPQWKENMFY 89 
                 78999999999999999999999999888889999*****************************9999999996 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.005
      DUF996  48 llvlgalatalelpgleeaaslilllllvliiayvlliisavflkksyellgkrtgvklFetagllyfiG 117
                 l v++++a + + + l+  +s++++++++ +  +v l++s +++ +s++  g+ +g  ++  ag ly +G
  CCE28342.1 142 LNVITQYACIRGVNLLAAKSSALTVTIVLNVRKLVSLLLSIWLFDNSLAY-GTLMGAVIVFGAGALYTLG 210
                 456777888888888888889**************************987.8999999999999999888 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     3e-05     0.089      26      83 ..      32      81 ..      12      99 .. 0.76
   2 ?   -2.4   0.0       1.6   4.7e+03       8      26 ..     194     212 ..     187     227 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3e-05
     DUF4079 26 qtrqrrlqskaerkekipkkvrdeHvklgslllllvvlgaigglvllylrrgklfpss 83
                         +a++k+ki+++ ++ H  +   ll+l+++ ++ ++++ly +++  ++++
  CCE28342.1 32 S--------DAQEKSKIASNGNNAHPIMNTGLLILFFAQVLSAIMGLYTEATYRLYGP 81
                3........345699999999999*999999999999999999999998777755554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.6
     DUF4079   8 lmvllvfpllgavaylGwq 26 
                 lm+++++  +ga   lG q
  CCE28342.1 194 LMGAVIVFGAGALYTLGTQ 212
                 5666665555555555555 PP

>> Arv1  Arv1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.1   0.00022      0.64      73     203 ..      10     200 ..       6     205 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
        Arv1  73 kikslirlvillllfevylt.wariekksesessslsaqaivlesakelkqylfflvlall...................................... 132
                 k++++  l++++l + v++  w+  ++ks+ +s+ ++a +i+     +   +lff +++l                                       
  CCE28342.1  10 KYSRVQALAVMFLSCGVVIAaWSDAQEKSKIASNGNNAHPIMN----TGLLILFF-AQVLSaimglyteatyrlygpqwkenmfyshmlslplflpflp 103
                 5667777888888887776515555554444444444444444....22222333.2222222344555555555666554444443332222222222 PP

        Arv1 133 ......etlvfhlsillllslesslsa.....lllky................................kkarlnalltalllssyaklfpilmlIWey 188
                       +                s+s+     + + +                                  a +++ lt  ++ ++ kl+ +l+ IW +
  CCE28342.1 104 smirnfN----------------SMSQseplkISMPWlpiiaepkvpgqlvylglnvitqyacirgvnlL-AAKSSALTVTIVLNVRKLVSLLLSIWLF 185
                 2222220................22223333333333677777777777777777777777888887743.455556666677799************* PP

        Arv1 189 dltalalslikllvl 203
                 d++++  +l++++++
  CCE28342.1 186 DNSLAYGTLMGAVIV 200
                 *99998777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1688.47
//
Query:       CCE28343.1  [L=943]
Description: probable AMP deaminase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     9e-123  409.8   0.1   1.3e-122  409.2   0.1    1.3  1  A_deaminase  Adenosine/AMP deaminase
  ------ inclusion threshold ------
       0.11   12.9   0.8       0.52   10.8   0.8    2.2  1  Dmrt1        Double-sex mab3 related transcription factor 1


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  409.2   0.1  1.5e-126  1.3e-122       1     327 [.     383     788 ..     383     789 .. 0.99

  Alignments for each domain:
  == domain 1  score: 409.2 bits;  conditional E-value: 1.5e-126
                  TS-EEEEEEECCCSS-HHHHHHHHHHHCHT..SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHT.............................. CS
  A_deaminase   1 nlpKvdlHvHldgclnpktllrlakkkgikeldekvveedeklltlqekfesLkeflydlsvdvlvlh.............................. 68 
                  n++Kvd+HvH+++c+n+k+llr++k+k++k+++e v+++d+k+ltl+e+f s+k+++ydls+d+l++h                              
   CCE28343.1 383 NVRKVDTHVHHSACMNQKHLLRFIKSKMKKHPNEIVLFRDGKYLTLAEVFSSIKLTAYDLSIDTLDMHahtdsfhrfdkfnlkynpigesrlrtiflk 480
                  89************************************************************************************************ PP

                  .............................................................CCCCCCHHHHHHCCCCCHCTTCCCCCCCCSHHHHHHH CS
  A_deaminase  69 .............................................................wlievvrllavekakdlakdfvkylevifsPlfeata 105
                                                                               wli+++rl++v+ka+ l+k+f++++++if+Plfe+t+
   CCE28343.1 481 tdnfihgrylaeitkevisdlesskyqmvewrisiygksldewdklaswvvdnklfshnirWLIQIPRLYDVYKASSLMKSFEQIVKNIFQPLFEVTK 578
                  ************************************************************************************************** PP

                  -GC.STCCHHHHCCCCCCCCCCHCCT-EEEEEECCETTTCCGHCCCHHHHHHCCCCCCCCCCCCC-TTSTTGGGHHHHHCCCCHTT-EEEEEESSSS- CS
  A_deaminase 106 gpq.lpelevvlkvvdgfdsvedeskvkerlilvksrkpeewseeinelasyyrdytvvnldllndekiepaslflklraeagkstllltpHaGEagg 202
                  +p  +p+l+v+l++v gfdsv+desk  er++++k+++p++w+ ++n+++sy+ +y ++n+++ln            +r+++g++tl+++pH+GEag+
   CCE28343.1 579 DPSsHPKLHVFLQRVIGFDSVDDESK-VERRLFKKFPVPKAWDYKQNPPYSYWIYYLFANMASLN-----------FWRKNRGFNTLVMRPHCGEAGD 664
                  **************************.899999********************************...........9********************* PP

                  CHHHHHHHHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-S...HHHHHHHHHHHH CS
  A_deaminase 203 lehvveAllllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgtt...LieeYaiaaqvf 297
                   eh++ All   +++i+HG++lrk+p Lqy ++l+q++++++PlSN+al  fl+y++nP++++++rglnvsl+tDDPlqf +t   LieeYa+aaq++
   CCE28343.1 665 SEHLAVALLC--CHSISHGLLLRKVPLLQYAFYLEQVGIAMSPLSNNAL--FLAYERNPFHQYFKRGLNVSLSTDDPLQFAFTkepLIEEYAVAAQIY 758
                  ********99..*************************************..*********************************************** PP

                  T--HHHHHHHHHHHHHCSSS-HHHHHHHCH CS
  A_deaminase 298 klseedlaelarNsvkqsflsadekkklld 327
                  kls +d++ela+Nsvkqs+ +a  k+ +l+
   CCE28343.1 759 KLSPVDMCELAKNSVKQSGYEASIKRMWLG 788
                  ****************************98 PP

>> Dmrt1  Double-sex mab3 related transcription factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8   5.8e-05      0.52      35      66 ..     854     885 ..     838     895 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.8e-05
       Dmrt1  35 saqptspssatssaategrsvisdiPsvtSRg 66 
                  ++ t++s+ +  a+++ r+v++d P+ tSR 
  CCE28343.1 854 KTTDTKTSQGPGQASNDQRQVLQDTPAETSRT 885
                 5566788999999******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (943 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 6765.35
//
Query:       CCE28344.1  [L=163]
Description: uncharacterized protein CPUR_01819 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1327.29
//
Query:       CCE28345.1  [L=307]
Description: uncharacterized protein CPUR_01820 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2447.62
//
Query:       CCE28346.1  [L=355]
Description: probable VID24-required for vacuolar import and degradation of Fbp1p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-60  201.6   0.1    8.8e-60  201.2   0.1    1.1  1  Vac_ImportDeg  Vacuolar import and degradation protein


Domain annotation for each model (and alignments):
>> Vac_ImportDeg  Vacuolar import and degradation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.2   0.1   4.9e-64   8.8e-60       1     144 [.     198     350 ..     198     352 .. 0.98

  Alignments for each domain:
  == domain 1  score: 201.2 bits;  conditional E-value: 4.9e-64
  Vac_ImportDeg   1 flrpgakfkGeqqsgkkkyevkvelktvdleeslltGfleikglteekpeittffegeiidekysfltkkkkwkaseetDlehWkkleafkkllak 96 
                    +lrpg++f+G+qqs+++ yev+velk+v+++es+l+G+l+i+glte++p++tt+fegeii +k+sf+tk+++w+a++++Dl+hW+k++af+++ +k
     CCE28346.1 198 YLRPGSRFHGTQQSERQIYEVQVELKNVNMAESFLCGYLRIQGLTEDHPTLTTYFEGEIIGTKFSFFTKHEDWGANSKVDLSHWAKFSAFRPF-QK 292
                    79******************************************************************************************5.55 PP

  Vac_ImportDeg  97 ..........dlenkelifmrwkekflvpdervksiegasfeGfYYivldqstgsieG 144
                              d++++e+ifmrwke+flvpd+rv++i+gasfeGfYYi+++q +g+++G
     CCE28346.1 293 harrgpitipDVTQNEHIFMRWKEHFLVPDHRVRTITGASFEGFYYICFNQLRGEVSG 350
                    59******************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2826.11
//
Query:       CCE28347.1  [L=315]
Description: uncharacterized protein CPUR_01822 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-06   26.0   0.1      0.068   12.9   0.0    2.1  2  UPF0020   Putative RNA methylase family UPF0020
  ------ inclusion threshold ------
       0.23   11.2   0.0       0.37   10.5   0.0    1.3  1  Met_10    Met-10+ like-protein


Domain annotation for each model (and alignments):
>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   7.5e-06     0.068       4      49 ..      51      96 ..      49     102 .. 0.84
   2 !   11.2   0.0   2.4e-05      0.21     109     134 ..     139     164 ..      98     169 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.5e-06
                S-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHH CS
     UPF0020  4 RefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaall 49
                R +   +++ ++L+    ++a + pg+  +DP+ G+G+++I  a  
  CCE28347.1 51 RGYISTTSMDSELSLITANIALAGPGKLVYDPFVGTGSFPIACASF 96
                556667788889999999999999*****************77765 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 2.4e-05
                 E--GGG--STTS---EEEE------- CS
     UPF0020 109 qadaakLrlkegevdvivtnpPYGer 134
                 +  ++ +r+++   d +v++pPYG r
  CCE28347.1 139 DIVNTPIRRNRRIWDGVVCDPPYGVR 164
                 33345566666689**********99 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.2e-05      0.37      95     136 ..      70     109 ..      34     112 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.2e-05
                 HTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHH CS
      Met_10  95 aklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPes 136
                 ++l+ +g++V d f G G f+i++a +  + + ++ d++ +s
  CCE28347.1  70 IALAGPGKLVYDPFVGTGSFPIACASF--GAIAWGSDIDGRS 109
                 345899*******************85..4566888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2441.16
//
Query:       CCE28348.1  [L=267]
Description: uncharacterized protein CPUR_01823 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-11   42.4   0.0    0.00012   21.5   0.0    2.8  2  Ribonuc_P_40  Ribonuclease P 40kDa (Rpp40) subunit


Domain annotation for each model (and alignments):
>> Ribonuc_P_40  Ribonuclease P 40kDa (Rpp40) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   7.8e-08    0.0014      30      78 ..     125     170 ..      79     177 .. 0.87
   2 !   21.5   0.0   6.7e-09   0.00012     132     209 ..     185     262 ..     172     266 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.8e-08
  Ribonuc_P_40  30 dnvvallpsGtLtLsldketYerlGLeGkpsrfggrkkqry.vveldLrs 78 
                    + +++ + G+Lt+++d++t+er GL+ +    g  k qr+ +v+ldL s
    CCE28348.1 125 NQLLTVAS-GILTMHMDESTFERSGLSDN---IGLVKGQRMrIVTLDLNS 170
                   55566666.*****************988...333457***9******86 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 6.7e-09
  Ribonuc_P_40 132 peikecepsiktttlrdvlvPklek..deeeseyseek.eledsalellEwLglvslgsertnaddaideylssYelpese 209
                   +++ ec+ + ++++ +  + P l+      +   +    ++++  l ++EwL+l+ l+s+r++  d++d +ls+Y++ +++
    CCE28348.1 185 VNVLECTAELEMHQGTTCNPPILDIgpL--S-FMDTGRlDMQEIGLRVYEWLSLLRLESPRVQYGDDVDTFLSRYRVASRD 262
                   5677777777777777777777766432..2.223344467888899****************************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2038.16
//
Query:       CCE28349.1  [L=217]
Description: related to ankyrins [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-07   30.5   0.0    2.7e-06   27.6   0.0    2.4  3  Ank_5     Ankyrin repeats (many copies)
    2.3e-05   24.9   0.1     0.0033   18.0   0.1    2.2  2  Ank_2     Ankyrin repeats (3 copies)
    5.2e-05   23.7   0.0     0.0015   19.0   0.0    2.7  3  Ank_4     Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.014   15.9   0.1       0.15   12.7   0.1    2.7  3  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0     6e-10   2.7e-06       2      53 ..      20      72 ..      19      72 .. 0.91
   2 ?   -1.8   0.0      0.94   4.2e+03      35      54 ..      84     104 ..      79     105 .. 0.74
   3 ?   -1.5   0.0      0.76   3.4e+03      23      48 ..     107     130 ..     106     137 .. 0.65

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 6e-10
       Ank_5  2 lehgpadvnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltal 53
                l++ p    ++d++g++ +h A +y + d++r+L+ +  +d nl+d++ +tal
  CCE28349.1 20 LREHPSLASAQDEHGYSLIHAATSYSHIDLLRILVkELDVDVNLKDEDDETAL 72
                56667778899****999999999***************************97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.94
       Ank_5  35 Ll.argadlnltdsrGltald 54 
                 L+ + g d + + ++Glta +
  CCE28349.1  84 LVeELGIDVFHRGADGLTARE 104
                 446668888888899999865 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.76
       Ank_5  23 AakygaadvvrlLlargadlnltdsr 48 
                 A+++ +++vv +L      +n td++
  CCE28349.1 107 ASEGDYPSVVDYLT--DIEANRTDKQ 130
                 67778888888887..5555555555 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   7.4e-07    0.0033      30      83 .]       6      65 ..       2      65 .. 0.82
   2 !    6.7   0.0    0.0024        11      21      82 ..      60     127 ..      59     130 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.4e-07
       Ank_2 30 LhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLl.ekgadinlkd 83
                 ++Aa n +  ++ lL eh      +d++g++ +h+A +++h++++++L+ e ++d+nlkd
  CCE28349.1  6 FILAADN-DPSLIPLLREHpslasaQDEHGYSLIHAATSYSHIDLLRILVkELDVDVNLKD 65
                5667766.568899999989988877799**999****99**********44499999997 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0024
       Ank_2  21 dpn..k.ngktaLhyAakngnleivklLleh..ad.....ndgrtpL.hyAarsghleivklLlekgadinlk 82 
                 d+n  + +++taL++  + +  e++  L+e+  +d      dg t+   +A++ +++ +v++L +  ++ n++
  CCE28349.1  60 DVNlkDeDDETALFVT-ETQ--EAAMVLVEElgIDvfhrgADGLTAReKIASEGDYPSVVDYLTD--IEANRT 127
                 5555325789999955.545..99999**9777334445688****96777766899******85..455554 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.4e-07    0.0015       2      39 ..      35      72 ..      34      74 .. 0.92
   2 ?    1.6   0.0     0.098   4.4e+02      15      38 ..      79     102 ..      78     120 .. 0.85
   3 ?   -2.3   0.0       1.6   7.3e+03      14      33 ..     112     129 ..     100     135 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.4e-07
       Ank_4  2 ltaLhyaaisgrlelvrlLl.ekgadinaqdnrsGetal 39
                ++++h+a ++++++l+r+L+ e ++d+n   ++++etal
  CCE28349.1 35 YSLIHAATSYSHIDLLRILVkELDVDVNLK-DEDDETAL 72
                6899****************777******9.*******9 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.098
       Ank_4  15 elvrlLlek.gadinaqdnrsGeta 38 
                 e+++ L+e  g+d+ ++  ++G+ta
  CCE28349.1  79 EAAMVLVEElGIDVFHR-GADGLTA 102
                 6788899654******9.9999997 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.6
       Ank_4  14 lelvrlLlekgadinaqdnr 33 
                 +++v   l ++++ n++ ++
  CCE28349.1 112 YPSVVDYL-TDIEANRT-DK 129
                 44433333.56777777.65 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.3e-05      0.15       1      30 [.      33      62 ..      33      63 .. 0.96
   2 ?   -1.9   0.0       1.9   8.5e+03      10      23 ..     107     121 ..     105     125 .. 0.71
   3 ?   -3.5   0.0         4   1.8e+04      16      24 ..     192     199 ..     187     200 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.3e-05
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvn 30
                +G++++h A ++ ++++++ L+++  +dvn
  CCE28349.1 33 HGYSLIHAATSYSHIDLLRILVKELDVDVN 62
                79**************************99 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.9
       Ank_3  10 arsgnle.ivkfLle 23 
                 a+ g+++ +v++L +
  CCE28349.1 107 ASEGDYPsVVDYLTD 121
                 556677559999966 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 4
       Ank_3  16 eivkfLlen 24 
                 + ++ L+en
  CCE28349.1 192 D-LRQLIEN 199
                 4.7889984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1631.78
//
Query:       CCE28350.1  [L=932]
Description: probable coatomer complex beta chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-92  310.5   6.7      3e-92  309.9   6.7    1.2  1  Adaptin_N        Adaptin N terminal region
    3.9e-59  198.6   0.3    8.2e-59  197.5   0.3    1.6  1  Coatamer_beta_C  Coatomer beta C-terminal region
    3.6e-47  159.5   0.1    8.9e-47  158.3   0.1    1.7  1  Coatomer_b_Cpla  Coatomer beta subunit appendage platform
    7.7e-12   45.5   4.7    3.2e-09   37.1   0.0    2.9  2  Cnd1             non-SMC mitotic condensation complex subunit
    1.1e-06   28.9   5.3     0.0023   18.3   0.0    4.8  5  HEAT_2           HEAT repeats
  ------ inclusion threshold ------
      0.013   15.7   0.9        4.8    7.7   0.0    4.5  4  HEAT             HEAT repeat
      0.059   13.9   0.0       0.17   12.4   0.0    1.7  1  Sir1             Regulatory protein Sir1
      0.074   13.4   0.2       0.26   11.7   0.2    2.0  1  AP4E_app_platf   Adaptin AP4 complex epsilon appendage platfo
      0.097   12.4   0.2       0.27   11.0   0.2    1.7  1  Fibin            Fin bud initiation factor homologue
       0.14   12.4   1.6        3.6    7.9   0.0    2.9  2  DUF5071          Domain of unknown function (DUF5071)


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.9   6.7   1.6e-95     3e-92       7     469 ..      24     490 ..      18     496 .. 0.95

  Alignments for each domain:
  == domain 1  score: 309.9 bits;  conditional E-value: 1.6e-95
                 HHHHHHCCSSS-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCC.SS-CHHHHHHHHHHHHHCTTSCC.....HHCCCCHHHHHHCCSSSHHHHHHH CS
   Adaptin_N   7 qelaeilnsnkdddekkkeavkkliylialGedvsflffevvklva.skdfelKrlvYlylellaeesed.....lalLvtnslqkDlkdpnqlirglA 99 
                 ++l+  l++    de+k e++k+++ ++++G++++ l+++++++v+ sk   lK+l+Y+y e++++ +       +++Lv+n +++Dl++pn++irg++
  CCE28350.1  24 SDLRMQLEKG--TDETKVETMKRVLTIMLNGDPMPSLLMHIIRFVMpSKHKPLKKLLYFYYEICPKLDGSgklkqEMILVCNGIRNDLQHPNEYIRGNT 120
                 6777778888..9****************************************************99877777779*********************** PP

                 HHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCT..T-SSHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC CS
   Adaptin_N 100 LrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikell..sdkdpgvvlaAvalleeikkndrlllkllpklvrr 196
                 Lr+L+++r++el e l+   +++l++r++yvrk+A+ a+  +++ +p+l+++  ++e+   +   ++d  ++++A+a+l +i   d+    +l +l++ 
  CCE28350.1 121 LRFLCKLRESELIEPLLSSARSCLEHRHAYVRKNAVFAVSSIFSHSPSLIPD--ASELLFTFieGETDATCKRNALAALASI---DHD--AALLYLSSV 212
                 **************************************************99..67777777788999**************...666..567777777 PP

                 HHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHH.SSCCTCHHHHHCHHHHH CS
   Adaptin_N 197 LcnllteldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapknelivlavnaLvrlls.skdenlryvaLrtllki 294
                 ++ +  + +++lq++ ++++++ a ++++ +  +++l+ +  ll   + +V +e++  ++ l +++ ++++a++++++l   + d+n+r+++L++  ++
  CCE28350.1 213 FDGI-PNAEELLQLVELEFIRKDATRNTQNK--ARYLRLIFDLLDAGASTVAYEAASSLTALTSNPVAVKAAATKFIELSIkEADNNVRLIVLDRVDQL 308
                 7745.999***********************..78********************************************7779**************** PP

                 HHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHH......HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHT CS
   Adaptin_N 295 vkkepkavqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevaded......fksklvkaIgrlaekfatdaewvldvllells 387
                  kk++  + +l +++ ++ +++d+++r+kald+ l++v+++Nv+e+v  Lkk+++++ d+d      ++s l+ +I+++a+kf ++a++v++ l+e++ 
  CCE28350.1 309 RKKNEGVLDDLVMEVLRVLSSTDIDVRRKALDIALDMVSSKNVEEVVLLLKKELSKTVDQDyeknaeYRSLLIHSIHQCAIKFSEVAASVVELLMEFIA 407
                 ****66666*********************************************888899999************************************ PP

                 TXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT....HHHHHHCTTTTTTTSXHH CS
   Adaptin_N 388 lsgesvkdeivevirdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsnte.sasdllrslaekfvlesek 469
                 + ++  + +++++++++++k+p+l++ i+e+L+ +l +++  ++++++ W++Gey+    +++  ++++  sl e ++l+se+
  CCE28350.1 408 DFNNASAVDVINFVKEVVEKFPTLRKTIVERLVSTLGEVRAGKVYRGITWIIGEYSLDENDIRdAWKRIRASLGEIPILASEE 490
                 ***************************************************************9*************999986 PP

>> Coatamer_beta_C  Coatomer beta C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.5   0.3   4.6e-62   8.2e-59       1     139 [.     679     814 ..     679     815 .. 0.97

  Alignments for each domain:
  == domain 1  score: 197.5 bits;  conditional E-value: 4.6e-62
  Coatamer_beta_C   1 vddlisfrqlkekkelseeeeedlveedlsqatgakkkeeefasklkkvvqLtGfsDpvYaEayvkvnqfDivLdvlivNqtketLqnltvela 94 
                      vdd++++rql++++  +     d +e dl++atg+++++e+++skl++vvqLtGfsDpvYaEayvkv+qfDivLdvl+vNqt+etLqnl+ve+a
       CCE28350.1 679 VDDVVQIRQLSKRNFCDGI---DGMEVDLERATGGEATTEDLSSKLSRVVQLTGFSDPVYAEAYVKVHQFDIVLDVLLVNQTTETLQNLSVEFA 769
                      79**********9976666...569********************************************************************* PP

  Coatamer_beta_C  95 tlgdlklvekpqsvtlaphdfakikatvkvsstetGvifGnivYd 139
                      tlgdlk+ve+p++ +l+phdf+++++tvkvsst+tGvifGn+vYd
       CCE28350.1 770 TLGDLKVVERPTTQNLGPHDFHNVQCTVKVSSTDTGVIFGNVVYD 814
                      ********************************************9 PP

>> Coatomer_b_Cpla  Coatomer beta subunit appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.3   0.1   4.9e-50   8.9e-47       1     110 [.     820     930 ..     820     932 .] 0.97

  Alignments for each domain:
  == domain 1  score: 158.3 bits;  conditional E-value: 4.9e-50
  Coatomer_b_Cpla   1 drnvvilndikidimdyikpakiseeeFremWaefeWEnkiavktkltdlkeyleelvkktnmklltpeeeleeeaeflsanlyaksvfgedal 94 
                      d+nvvilnd+++dimdyi+pa+++e++Fr+mW+efeWEnk+++++k ++l+++l+el++ tnmk+ltpe++l+++++flsanlya+svfgedal
       CCE28350.1 820 DTNVVILNDLHVDIMDYIQPATCTETQFRTMWTEFEWENKVNINSKAESLRTFLDELMACTNMKCLTPEASLKGDCQFLSANLYARSVFGEDAL 913
                      6799****************************************************************************************** PP

  Coatomer_b_Cpla  95 anvsiekee.egkisgv 110
                      an+sieke+ +g i+g+
       CCE28350.1 914 ANLSIEKEGeDGPITGF 930
                      ********978899886 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.8e-12   3.2e-09       2      91 ..     116     206 ..     115     250 .. 0.86
   2 !    7.6   2.7    0.0021       3.7      18     160 ..     315     458 ..     269     460 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.8e-12
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselakll.eDenprVvanalaalteiseksen 91 
                 iR++ +r l+ +r ++l+e+l++  r++L+ +++yVRk+a+++v+ ++++      +  + l + +  +++++   nalaal  i + +  
  CCE28350.1 116 IRGNTLRFLCKLRESELIEPLLSSARSCLEHRHAYVRKNAVFAVSSIFSHSPSLIPDASELLFTFIeGETDATCKRNALAALASIDHDAAL 206
                 9**********************************************8887777777777777888678899999*******999887644 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0021
        Cnd1  18 lveylvepLrkrLkDedpyVRktaaivvakLilndmvkekg..flselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsew 114
                 +++ lv ++ + L+ +d  VR+ a+ + + +++ + v+e    + +el k ++ + ++  +   ++++ i++ +  ++ ++  +++  l + + +++++
  CCE28350.1 315 VLDDLVMEVLRVLSSTDIDVRRKALDIALDMVSSKNVEEVVllLKKELSKTVDQDYEKNAEYRSLLIHSIHQCA-IKFSEVAASVVELLMEFIADFNNA 412
                 67888888899999999999999999999998888888777544456666664444555555555666666665.66777888888888888889**** PP

        Cnd1 115 gqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikvi 160
                 + + +++f+ + ++k     +++ve+l++ l  ++  +v + i  i
  CCE28350.1 413 SAVDVINFVKEVVEKFPTLRKTIVERLVSTLGEVRAGKVYRGITWI 458
                 ***************9999************999999999988776 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.3e-06    0.0023       8      88 .]     109     198 ..     104     198 .. 0.85
   2 !   14.0   0.0   2.8e-05      0.05       8      69 ..     144     211 ..     140     221 .. 0.80
   3 ?    1.7   0.1      0.19   3.4e+02      29      66 ..     242     284 ..     231     299 .. 0.69
   4 !    7.1   0.4     0.004       7.1       5      69 ..     286     360 ..     282     379 .. 0.71
   5 ?   -3.4   0.0       7.3   1.3e+04      21      31 ..     629     639 ..     618     659 .. 0.52

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.3e-06
      HEAT_2   8 lendpdpevrraairaLgrignpealpaLvell....ededpavRraaaeaLgai..gd....pealpaLkellddddddvvReaAaeaLa 88 
                 l ++p++++r +++r L ++++ e+++ L++ +    e+ +++vR++a+ a + i   +    p+a ++L      ++d+  ++ A+ aLa
  CCE28350.1 109 L-QHPNEYIRGNTLRFLCKLRESELIEPLLSSArsclEHRHAYVRKNAVFAVSSIfsHSpsliPDASELLFTFIEGETDATCKRNALAALA 198
                 5.79*********************999988775333567899*********9885522457899********************999996 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2.8e-05
      HEAT_2   8 lendpdpevrraairaLgri..gnp....ealpaLvell.ededpavRraaaeaLgaigdpealpaLke 69 
                 l ++ + +vr++a+ a  +i  ++p    +a ++L+ ++   +d+   r+a  aL+ i++++al  L  
  CCE28350.1 144 L-EHRHAYVRKNAVFAVSSIfsHSPslipDASELLFTFIeGETDATCKRNALAALASIDHDAALLYLSS 211
                 5.78999***********6544555555588889999995568999*************9999877765 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.19
      HEAT_2  29 npealpaLvellededpavRraaaeaLgaigd.....pealpa 66 
                   ++l+++++ll+   + v ++aa +L a+ +     ++a+  
  CCE28350.1 242 KARYLRLIFDLLDAGASTVAYEAASSLTALTSnpvavKAAATK 284
                 4578999999999999999999999999996432222444455 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.004
      HEAT_2   5 lqalendpdpevrraairaLgrignp......ealpaLvellededpavRraaae.aLgaigd...pealpaLke 69 
                 +++  + +d +vr  +++   +++ +      +++  ++++l+++d +vRr a + aL  + +   +e++ +Lk+
  CCE28350.1 286 IELSIKEADNNVRLIVLDRVDQLRKKnegvldDLVMEVLRVLSSTDIDVRRKALDiALDMVSSknvEEVVLLLKK 360
                 666667899999999999999654444477778899999**************9856665543223555555555 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 7.3
      HEAT_2  21 iraLgrignpe 31 
                 +r+L+++++++
  CCE28350.1 629 VRSLAEFASKK 639
                 35555444442 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         2   3.6e+03       9      26 ..     109     126 ..     103     127 .. 0.82
   2 ?    7.7   0.0    0.0027       4.8       7      30 ..     142     165 ..     136     166 .. 0.86
   3 ?   -0.1   0.0      0.85   1.5e+03       3      29 ..     247     273 ..     246     274 .. 0.87
   4 ?    1.7   0.1      0.24   4.2e+02       6      21 ..     324     339 ..     320     341 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2
                 HT-SSHHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLga 26 
                 l++p+  +R ++++ L++
  CCE28350.1 109 LQHPNEYIRGNTLRFLCK 126
                 899******999998876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0027
                 HHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   7 kllsDpspeVReaAakaLgalaev 30 
                 ++l++ ++ VR++A+ a+  + ++
  CCE28350.1 142 SCLEHRHAYVRKNAVFAVSSIFSH 165
                 6899**************999876 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.85
                 HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalae 29 
                  l+  ll   ++ V + Aa +L+al +
  CCE28350.1 247 RLIFDLLDAGASTVAYEAASSLTALTS 273
                 6788899999999***********987 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.24
                 HHHHT-SSHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAa 21 
                 l+ ls+++ +VR+ A+
  CCE28350.1 324 LRVLSSTDIDVRRKAL 339
                 5669********9997 PP

>> Sir1  Regulatory protein Sir1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.4e-05      0.17      11      81 ..     122     190 ..     121     198 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.4e-05
        Sir1  11 gFlVdtekkkkiinpktkklkkltkeerekleklklvdldelkkysksdlipvdskeLFelveteerefye 81 
                 +Fl +++++  +i+p  ++ +++ + +   + k   + +++++   + +lip  s++LF  +e e+   ++
  CCE28350.1 122 RFLCKLRES-ELIEPLLSSARSCLEHRHAYVRKNAVFAVSSIFS-HSPSLIPDASELLFTFIEGETDATCK 190
                 699999***.**********************************.999**************998876665 PP

>> AP4E_app_platf  Adaptin AP4 complex epsilon appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00014      0.26       1      44 [.     839     882 ..     839     889 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
  AP4E_app_platf   1 PltisteeFgklWlslsserkqklkssqvstlselkalleklsl 44 
                     P+t +  +F ++W +++ e k++++s+++s+ + l+ l+   ++
      CCE28350.1 839 PATCTETQFRTMWTEFEWENKVNINSKAESLRTFLDELMACTNM 882
                     7889999******************6666665555777766555 PP

>> Fibin  Fin bud initiation factor homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00015      0.27      66     153 ..     346     435 ..     329     445 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
       Fibin  66 ilkrqvedaarvle.glgksisydldGeesygkylrressqiseafsnsdksllelevkfkqsqeqekree.krlnddflkkvaevrell 153
                 +  ++ve+   +l+  l+k++++d + +  y   l + ++q +  fs++  s++el + f    ++ +  +  ++ +++++k  + r+++
  CCE28350.1 346 VSSKNVEEVVLLLKkELSKTVDQDYEKNAEYRSLLIHSIHQCAIKFSEVAASVVELLMEFIADFNNASAVDvINFVKEVVEKFPTLRKTI 435
                 5567788887777527******************************************99877766555443555555555555555554 PP

>> DUF5071  Domain of unknown function (DUF5071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.7      0.14   2.5e+02      54     105 ..     317     372 ..     302     382 .. 0.73
   2 ?    7.9   0.0     0.002       3.6      22      59 ..     394     431 ..     380     441 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.14
                 GGTHHHHHHHHHSS-HHHHHHHHHHHGGGS-HHHHHH....HHHHHHHHHTS--SS CS
     DUF5071  54 eelvkeiaeiLeknDeewkyfvleflveklpveskkk....lkeelerlveepted 105
                 ++lv e+  +L++ D   +   l++  + ++ ++ ++    lk+el++ v +  e+
  CCE28350.1 317 DDLVMEVLRVLSSTDIDVRRKALDIALDMVSSKNVEEvvllLKKELSKTVDQDYEK 372
                 56777888888*****9999998887766666655555666999998888776554 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.002
                 HHGGGHHHHHGGGS-TTSTTHHHHHHHHHHTGGGTHHH CS
     DUF5071  22 elkplvpeLLeWlqDlNwPiaspiaelLarfpeelvke 59 
                     +v+ L+e+++D N+  a ++++ +++ +e++   
  CCE28350.1 394 VAASVVELLMEFIADFNNASAVDVINFVKEVVEKFPTL 431
                 4566889999*******************999887555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (932 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 6419.33
//
Query:       CCE28351.1  [L=189]
Description: related to ribosomal protein YmL11 precursor,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1657.39
//
Query:       CCE28352.1  [L=457]
Description: probable 26S proteasome regulatory particle chain RPT5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-40  136.2   0.0    1.9e-39  135.1   0.0    1.6  1  AAA             ATPase family associated with various cellula
    3.1e-17   62.3   0.1    6.3e-17   61.3   0.1    1.6  1  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
    4.4e-08   32.8   0.0    9.8e-08   31.7   0.0    1.6  1  AAA_lid_3       AAA+ lid domain
     0.0001   22.8   1.6      0.018   15.5   0.0    2.9  3  AAA_16          AAA ATPase domain
    0.00016   21.6   0.1     0.0007   19.6   0.1    2.0  1  AAA_5           AAA domain (dynein-related subfamily)
     0.0004   20.2   0.0    0.00093   19.0   0.0    1.5  1  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
    0.00083   19.6   0.8      0.083   13.2   0.0    2.9  3  AAA_22          AAA domain
     0.0017   18.5   0.0      0.011   15.9   0.0    2.3  1  AAA_2           AAA domain (Cdc48 subfamily)
     0.0057   16.1   0.2       0.08   12.4   0.1    2.3  2  PhoH            PhoH-like protein
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.025   14.0   0.0    1.4  1  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.014   15.6   0.0      0.034   14.3   0.0    1.8  1  AAA_33          AAA domain
      0.017   14.3   0.0      0.037   13.2   0.0    1.6  1  DUF815          Protein of unknown function (DUF815)
      0.076   12.7   0.1       0.18   11.5   0.1    1.5  1  IstB_IS21       IstB-like ATP binding protein
       0.12   11.8   0.0       0.34   10.4   0.0    1.8  1  AAA_7           P-loop containing dynein motor region
       0.62    9.8   0.0       0.62    9.8   0.0    2.5  3  AAA_11          AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.0   1.6e-42   1.9e-39       2     132 .]     242     374 ..     241     374 .. 0.96

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 1.6e-42
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvk 97 
                 l+yGppGtGKTlla+a a +++++fl++ g++l+++++g+++k +r++f+ akeka p i+fiDE+da++++r   ++s ++e +r++ +Ll++ldg+ 
  CCE28352.1 242 LMYGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKA-PAIIFIDELDAVGTKRfdsEKSGDREVQRTMLELLNQLDGFA 339
                 89*****************************************************9.****************997777889999************** PP

                 TSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  98 kkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 ++ +++ v++atnr+d ldpallr gR+drkie++l
  CCE28352.1 340 SD-DRIKVLAATNRVDVLDPALLRsGRLDRKIEFPL 374
                 *7.66****************************985 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.1   5.3e-20   6.3e-17       1      57 []     107     183 ..     107     183 .. 0.99

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 5.3e-20
                     EEEEEEE-TT....................SSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE- CS
  Prot_ATP_ID_OB   1 VatVsEvldd....................teraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkLP 57 
                     V++V+E+ld                     +++a++kts++++++++l g+v+ ++L+p Dl++v+kd+++i++ LP
      CCE28352.1 107 VGNVVELLDLdptaesseeganidldatrvGKSAVIKTSTRQTIFLPLIGLVDSDKLKPADLIGVNKDSYLILDTLP 183
                     9********9******************************************************************9 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   8.2e-11   9.8e-08       2      42 ..     397     437 ..     396     440 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 8.2e-11
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgikeitmed 42 
                 v++ eLA+ T+ + GA l+a+c eA++ Alr g  +i+ e+
  CCE28352.1 397 VNWGELARSTDEFGGAMLKAVCVEAGMIALRSGKNKIGHEH 437
                 8999*******************************999988 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       5.1   6.1e+03      34      43 ..     135     144 ..     133     150 .. 0.77
   2 !   15.5   0.0   1.5e-05     0.018      17      48 ..     231     262 ..     227     280 .. 0.75
   3 ?    5.4   0.0     0.018        21     121     149 ..     284     316 ..     268     342 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.1
      AAA_16  34 GvGKsslvre 43 
                  vGKs+++++
  CCE28352.1 135 RVGKSAVIKT 144
                 69*****976 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.5e-05
      AAA_16  17 ervrsgrpelvllsGesGvGKsslvrellral 48 
                 +++    p   l +G++G+GK+ l+r+++ + 
  CCE28352.1 231 KKIGIKAPKGALMYGPPGTGKTLLARACAAQT 262
                 555666788999***************99643 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.018
      AAA_16 121 ellkrllallsrderplvlvlDdlq.....wade 149
                  l+++++al+++ + p ++++D+l+     ++d+
  CCE28352.1 284 KLVRDCFALAKE-KAPAIIFIDELDavgtkRFDS 316
                 567788889998.778*********777774444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   5.9e-07    0.0007       3     136 ..     242     362 ..     240     363 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.9e-07
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHH.HHSSEEE..-SS CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlsl.leerrllleegg 100
                 l+ GppGtgK+ la+  aa + ++++  ++++      l++     +g +  +d  +  + + ++i+++DE++ + ++ ++s  s   e +r +le ++
  CCE28352.1 242 LMYGPPGTGKTLLARACAAQTDATFLKLAGPQ------LVQMFI-GDGAKLVRDCFALAKEKAPAIIFIDELDAVGTKRFDSEKSGdREVQRTMLELLN 333
                 899*********************99999998......777666.35555555555555555999********99999998887751444555566667 PP

                 SEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5 101 elvkaknddllerfrviatanpldrslnelspalrs 136
                 +l ++++dd   r+ v+a++n++d     l+pal++
  CCE28352.1 334 QLDGFASDD---RIKVLAATNRVD----VLDPALLR 362
                 777777765...699999999999....88888875 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   7.7e-07   0.00093      36      94 ..     241     307 ..     227     313 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.7e-07
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvleka..gdlaalltn...l...eekdvlfideih 94 
                  l+yGpPG Gkt la+  a++ ++++   +gP l +   gd a l+ +   l   ++  ++fide+ 
  CCE28352.1 241 ALMYGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMfiGDGAKLVRDcfaLakeKAPAIIFIDELD 307
                 69******************************99774336666554331113111445688888875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.8   3.3e+03      14      28 ..     134     148 ..     133     156 .. 0.86
   2 !   13.2   0.0   6.9e-05     0.083       9      30 ..     242     263 ..     236     277 .. 0.84
   3 ?    3.6   0.0     0.063        76      86     125 ..     293     346 ..     273     354 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.8
      AAA_22  14 sGtGKTtllrrlleq 28 
                 + +GK+ ++++ ++q
  CCE28352.1 134 TRVGKSAVIKTSTRQ 148
                 569******998877 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 6.9e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqld 30 
                 + +G++GtGKT+l+r  + q d
  CCE28352.1 242 LMYGPPGTGKTLLARACAAQTD 263
                 569*************999985 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.063
      AAA_22  86 lraravielliiDEaqhlr.....s.........eealeeLrsllnl.srkgvql 125
                 ++++a ++++ iDE + +      s          ++le L +l  + s++ +++
  CCE28352.1 293 AKEKA-PAIIFIDELDAVGtkrfdSeksgdrevqRTMLELLNQLDGFaSDDRIKV 346
                 34444.59*********98766651566777787888888877766666666655 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     9e-06     0.011       7     104 ..     242     333 ..     238     343 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9e-06
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqil 103
                 l+ gp g+Gkt+la+a a   ++    ++  +   +l +      + +  +  ++    a+e+   i+++DE+d +  k+  ++     +Vqr +L +l
  CCE28352.1 242 LMYGPPGTGKTLLARACAAQTDA----TFLKLAGPQLVQ----MFIGDGAKLVRDCFALAKEKApaIIFIDELDAVGTKRFDSEKSGDREVQRTMLELL 332
                 6889999*****99999999995....788777777777....66666666666666667777777************86666667778********99 PP

                 H CS
       AAA_2 104 e 104
                  
  CCE28352.1 333 N 333
                 6 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   6.7e-05      0.08      23      42 ..     242     261 ..     225     266 .. 0.87
   2 ?    1.1   0.0       0.2   2.4e+02      75     117 ..     323     365 ..     296     370 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.7e-05
                 EEE--TTSSTTHHHHHHHHH CS
        PhoH  23 faiGpaGtGKtylavalave 42 
                  + Gp GtGKt+la a+a++
  CCE28352.1 242 LMYGPPGTGKTLLARACAAQ 261
                 689**************987 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
                 ---TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-- CS
        PhoH  75 kvdpylrplydaLkdllgaekvekllekgkievaplaymRGrT 117
                  v+  +  l ++L+ + ++++++ l  ++++ v++ a +R   
  CCE28352.1 323 EVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPALLRSGR 365
                 566778889999*************************999555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.1e-05     0.025      17      42 ..     233     258 ..     221     263 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.1e-05
  Mg_chelatase  17 iaaaGgHnlllvGppGsGKtmlakrl 42 
                   i +      l++GppG+GKt+la++ 
    CCE28352.1 233 IGIKAPKGALMYGPPGTGKTLLARAC 258
                   5555556679*************975 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.8e-05     0.034       3      28 ..     242     267 ..     241     335 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.8e-05
      AAA_33   3 llvGlpGsGKstlaerllkklgavll 28 
                 l+ G+pG+GK+ la+  +++++a++l
  CCE28352.1 242 LMYGPPGTGKTLLARACAAQTDATFL 267
                 799**************999997665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.1e-05     0.037      26     116 ..     202     306 ..     184     357 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.1e-05
      DUF815  26 klddLvgidkqkealvent.......eqfle.glpa.nnvLLwGarGtGKSslvkallneyaeegLrli..evekedlkelpklve...llrerperfi 110
                 + +d+ g+dkq e+lve +        +f + g +a + +L++G  GtGK  l +a+ +++ ++ L+l   ++ +  + +  klv+   +l++++   i
  CCE28352.1 202 QYTDVGGLDKQIEELVEAIvwpmkeaDRFKKiGIKApKGALMYGPPGTGKTLLARACAAQTDATFLKLAgpQLVQMFIGDGAKLVRdcfALAKEKAPAI 300
                 5666777777777776543111111155554344552679***********************998875334445555555555542226788889999 PP

      DUF815 111 lfvDDL 116
                 +f+D L
  CCE28352.1 301 IFIDEL 306
                 999988 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00015      0.18      47      70 ..     238     261 ..     232     274 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
   IstB_IS21  47 kenivllGpsGvGKshlaialgve 70 
                  ++ ++ Gp+G+GK+ la a + +
  CCE28352.1 238 PKGALMYGPPGTGKTLLARACAAQ 261
                 5677899***********998876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00028      0.34      30      58 ..     235     263 ..     226     319 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00028
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkld 58 
                 +k+ k  l++Gp GtGKt++++ +  + d
  CCE28352.1 235 IKAPKGALMYGPPGTGKTLLARACAAQTD 263
                 6777889**************99888877 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   3.6       4.9   5.8e+03     134     175 ..      21      91 ..       6     105 .. 0.43
   2 ?   -2.1   0.0       2.3   2.7e+03      79     105 ..     122     147 ..     106     151 .. 0.71
   3 ?    9.8   0.0   0.00052      0.62      17      39 ..     238     260 ..     225     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.9
      AAA_11 134 eklakelrafeeeeek.............................eklkkskekskskleqerrklkkerk 175
                 e+ +ke+r +e+++++                             e+  +  + + s+l++e+ ++ +++k
  CCE28352.1  21 ESASKEIRHKEDDDKRgnshddddildeeilslgtqdiltrkrllENDSRINKSEFSRLSHEKAAMGEKIK 91 
                 33333333333333334444444555566666666655555433322222222222333333333333333 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.3
      AAA_11  79 ldsegekykpkivRvgneeeriseavk 105
                  ++eg++++++  Rvg+++  i+++++
  CCE28352.1 122 SSEEGANIDLDATRVGKSA-VIKTSTR 147
                 56679999999*****999.6666665 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00052
      AAA_11  17 seitliqGPPGtgKTktivells 39 
                 ++ +l+ GPPGtgKT    +  +
  CCE28352.1 238 PKGALMYGPPGTGKTLLARACAA 260
                 55689**********77666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 3461.76
//
Query:       CCE28353.1  [L=542]
Description: probable brefeldin A resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-81  265.9  22.0      9e-15   54.7   0.0    8.3  8  Ish1           Putative stress-responsive nuclear envelope pr
    4.2e-11   42.3   0.0       0.51   10.2   0.0    6.9  7  SAP            SAP domain
    2.1e-07   30.8   1.0      0.092   12.7   0.1    6.2  8  Slx4           Slx4 endonuclease
    3.2e-05   23.6   0.0        2.4    7.9   0.0    4.6  4  HeH            HeH/LEM domain
  ------ inclusion threshold ------
      0.014   15.7   0.1         21    5.5   0.0    4.0  4  EF-hand_9      EF-hand domain
      0.041   12.0   0.0       0.43    8.6   0.0    2.5  4  Herpes_ori_bp  Origin of replication binding protein
      0.062   13.8   2.7       0.87   10.1   0.1    3.5  4  Neprosin_AP    Neprosin activation peptide
       0.11   11.8   6.8        6.7    6.0   0.0    4.2  5  6PGD           6-phosphogluconate dehydrogenase, C-terminal d


Domain annotation for each model (and alignments):
>> Ish1  Putative stress-responsive nuclear envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   1.8     4e-08   8.9e-05       1      37 []      31      66 ..      31      66 .. 0.95
   2 !   18.1   0.2   1.1e-06    0.0025       1      37 []      75     112 ..      75     112 .. 0.90
   3 !   46.5   0.0   1.4e-15   3.2e-12       2      35 ..     133     165 ..     132     165 .. 0.97
   4 !   54.7   0.0     4e-18     9e-15       1      37 []     187     222 ..     187     222 .. 0.98
   5 !   35.5   0.0   4.1e-12   9.1e-09       2      37 .]     254     288 ..     254     288 .. 0.97
   6 !   33.9   0.0   1.3e-11   2.8e-08       4      37 .]     338     370 ..     336     370 .. 0.97
   7 !   19.1   0.2   5.4e-07    0.0012       1      30 [.     383     417 ..     383     424 .. 0.87
   8 !   44.0   0.0     9e-15     2e-11       1      36 [.     455     489 ..     455     490 .. 0.97

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4e-08
        Ish1  1 FdtWSdsdLkkWLdshGipvskaastRdeLlklardn 37
                ++ W   +L  WL++h i   ++as+R +L +l+ ++
  CCE28353.1 31 YNKWHQTELERWLADHDIS-YPKASDRKDLEALVENY 66
                899****************.7************9876 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.1e-06
        Ish1   1 FdtWSdsdLkkWLdshG.ipvskaastRdeLlklardn 37 
                 ++ W+  +L ++L + G ++ + a+ ++d Ll+++++n
  CCE28353.1  75 YSRWNIAELSAYLREKGqDVQTAAEESKDNLLAQVKSN 112
                 899**************666667777**********98 PP

  == domain 3  score: 46.5 bits;  conditional E-value: 1.4e-15
        Ish1   2 dtWSdsdLkkWLdshGipvskaastRdeLlklar 35 
                 dtWSds+Lk+++d++Gipv +++  Rd Ll++ar
  CCE28353.1 133 DTWSDSQLKAFCDKQGIPV-PQPRQRDSLLQKAR 165
                 9*****************8.*************8 PP

  == domain 4  score: 54.7 bits;  conditional E-value: 4e-18
        Ish1   1 FdtWSdsdLkkWLdshGipvskaastRdeLlklardn 37 
                 + +WSdsd k+WLd++Gipv ++++tRd+L++++r+n
  CCE28353.1 187 YQSWSDSDFKAWLDKYGIPV-PQPTTRDKLVAAVRRN 222
                 89*****************8.**************98 PP

  == domain 5  score: 35.5 bits;  conditional E-value: 4.1e-12
        Ish1   2 dtWSdsdLkkWLdshGipvskaastRdeLlklardn 37 
                 d WS+s+Lk+++d+++ipv +++++ +eL +l r++
  CCE28353.1 254 DAWSNSNLKDFCDKNNIPV-PQGTKENELRALIRKH 288
                 89****************8.*************996 PP

  == domain 6  score: 33.9 bits;  conditional E-value: 1.3e-11
        Ish1   4 WSdsdLkkWLdshGipvskaastRdeLlklardn 37 
                 WS+s+Lk++Ld  Gipv +++s+ d L +++r++
  CCE28353.1 338 WSESRLKAYLDARGIPV-PHESSIDSLRATVRKH 370
                 ****************8.**************97 PP

  == domain 7  score: 19.1 bits;  conditional E-value: 5.4e-07
        Ish1   1 FdtWSdsdLkkWLdshGipvskaas.....tRdeL 30 
                 Fd+ S ++Lk++L+s G+ ++k+a+     t++eL
  CCE28353.1 383 FDDFSSDNLKAYLSSLGDDAAKKAAekkdvTKEEL 417
                 9****************997788778999999998 PP

  == domain 8  score: 44.0 bits;  conditional E-value: 9e-15
        Ish1   1 FdtWSdsdLkkWLdshGipvskaastRdeLlklard 36 
                 F++W++s+Lk +Lds+Gipv +++s+ ++L ++ar+
  CCE28353.1 455 FKSWTESELKTYLDSYGIPV-PQGSKLEDLKAMARK 489
                 99*****************8.*************98 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.055   1.2e+02       1      17 [.      75      91 ..      75      94 .. 0.93
   2 !    8.3   0.0    0.0009         2       2      20 ..     133     151 ..     132     151 .. 0.91
   3 ?    2.2   0.0     0.069   1.5e+02       1      20 [.     187     206 ..     187     206 .. 0.94
   4 ?    2.9   0.0     0.043        96       3      20 ..     255     272 ..     253     278 .. 0.87
   5 !    6.5   0.0    0.0032       7.3       2      20 ..     336     354 ..     335     354 .. 0.90
   6 ?   -2.8   0.0       2.6   5.8e+03       9      17 ..     391     399 ..     389     399 .. 0.91
   7 !   10.2   0.0   0.00023      0.51       1      20 [.     455     474 ..     455     474 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.055
                HTT--HHHHHHHHHHTT CS
         SAP  1 lskltVaeLKeeLkkrG 17
                +s +  aeL ++L++ G
  CCE28353.1 75 YSRWNIAELSAYLREKG 91
                899***********976 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0009
                 TT--HHHHHHHHHHTT--T CS
         SAP   2 skltVaeLKeeLkkrGLpt 20 
                  +++ ++LK+++ k G+p+
  CCE28353.1 133 DTWSDSQLKAFCDKQGIPV 151
                 689**************96 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.069
                 HTT--HHHHHHHHHHTT--T CS
         SAP   1 lskltVaeLKeeLkkrGLpt 20 
                 +++++ ++ K+ L k+G+p+
  CCE28353.1 187 YQSWSDSDFKAWLDKYGIPV 206
                 899***************96 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.043
                 T--HHHHHHHHHHTT--T CS
         SAP   3 kltVaeLKeeLkkrGLpt 20 
                  ++ + LK+++ k+++p+
  CCE28353.1 255 AWSNSNLKDFCDKNNIPV 272
                 688888**********96 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.0032
                 TT--HHHHHHHHHHTT--T CS
         SAP   2 skltVaeLKeeLkkrGLpt 20 
                 s+++ + LK++L +rG+p+
  CCE28353.1 336 SLWSESRLKAYLDARGIPV 354
                 7899999**********96 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 2.6
                 HHHHHHHTT CS
         SAP   9 LKeeLkkrG 17 
                 LK++L+++G
  CCE28353.1 391 LKAYLSSLG 399
                 9****9998 PP

  == domain 7  score: 10.2 bits;  conditional E-value: 0.00023
                 HTT--HHHHHHHHHHTT--T CS
         SAP   1 lskltVaeLKeeLkkrGLpt 20 
                 ++++t +eLK +L ++G+p+
  CCE28353.1 455 FKSWTESELKTYLDSYGIPV 474
                 689***************96 PP

>> Slx4  Slx4 endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         2   4.6e+03      28      43 ..      38      50 ..      37      62 .. 0.74
   2 ?   -3.1   0.0       3.5   7.9e+03      26      40 ..      80      94 ..      79     106 .. 0.72
   3 !   12.7   0.1   4.1e-05     0.092      29      57 ..     121     149 ..     119     151 .. 0.93
   4 ?    1.9   0.0     0.098   2.2e+02      43      57 ..     190     204 ..     170     208 .. 0.79
   5 ?    1.0   0.0      0.18   4.1e+02      33      55 ..     248     268 ..     242     272 .. 0.76
   6 ?    2.3   0.0     0.073   1.6e+02      42      57 ..     337     352 ..     322     354 .. 0.80
   7 ?    3.6   0.0     0.029        65      33      57 ..     450     472 ..     437     474 .. 0.77
   8 ?   -3.0   0.0       3.4   7.5e+03      26      36 ..     480     490 ..     479     493 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2
                HHHHHHHHH-GGGGGS CS
        Slx4 28 dltawLnteglglkev 43
                +l +wL ++++    +
  CCE28353.1 38 ELERWLADHDI---SY 50
                78999999988...44 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.5
                HHHHHHHHHHH-GGG CS
        Slx4 26 LedltawLnteglgl 40
                + +l a L+++g  +
  CCE28353.1 80 IAELSAYLREKGQDV 94
                578999999998733 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 4.1e-05
                 HHHHHHHH-GGGGGS-HHHHHHHHHHHT- CS
        Slx4  29 ltawLnteglglkevdpaelrewcdskgI 57 
                 l+ w+n+++  l+ +++++l+++cd++gI
  CCE28353.1 121 LQGWANAKDWILDTWSDSQLKAFCDKQGI 149
                 788*******999***************9 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.098
                 S-HHHHHHHHHHHT- CS
        Slx4  43 vdpaelrewcdskgI 57 
                 +++++ ++w+d+ gI
  CCE28353.1 190 WSDSDFKAWLDKYGI 204
                 677888999999888 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.18
                 HHHH-GGGGGS-HHHHHHHHHHH CS
        Slx4  33 Lnteglglkevdpaelrewcdsk 55 
                 L+++   ++ ++ ++l+++cd++
  CCE28353.1 248 LTDS--IIDAWSNSNLKDFCDKN 268
                 5555..46678899*******97 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.073
                 GS-HHHHHHHHHHHT- CS
        Slx4  42 evdpaelrewcdskgI 57 
                  ++++ l++++d +gI
  CCE28353.1 337 LWSESRLKAYLDARGI 352
                 67899**********9 PP

  == domain 7  score: 3.6 bits;  conditional E-value: 0.029
                 HHHH-GGGGGS-HHHHHHHHHHHT- CS
        Slx4  33 LnteglglkevdpaelrewcdskgI 57 
                 +++e   +k + ++el++++ds gI
  CCE28353.1 450 AQQE--VFKSWTESELKTYLDSYGI 472
                 4444..4568999*********999 PP

  == domain 8  score: -3.0 bits;  conditional E-value: 3.4
                 HHHHHHHHHHH CS
        Slx4  26 LedltawLnte 36 
                 Ledl+a+++++
  CCE28353.1 480 LEDLKAMARKQ 490
                 99****99887 PP

>> HeH  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0011       2.4       8      22 ..      38      52 ..      37      58 .. 0.80
   2 ?    1.7   0.0     0.096   2.1e+02       9      21 ..     195     207 ..     193     219 .. 0.87
   3 ?    2.5   0.0     0.053   1.2e+02       7      23 ..     341     357 ..     341     359 .. 0.89
   4 !    5.0   0.0    0.0087        20       7      25 ..     461     479 ..     456     483 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0011
         HeH  8 qLRriLvehgveyPs 22
                +L r+L+ h+++yP 
  CCE28353.1 38 ELERWLADHDISYPK 52
                5779**********3 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.096
         HeH   9 LRriLvehgveyP 21 
                  +++L ++g+++P
  CCE28353.1 195 FKAWLDKYGIPVP 207
                 589********99 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.053
         HeH   7 aqLRriLvehgveyPsn 23 
                 ++L++ L + g+++P+ 
  CCE28353.1 341 SRLKAYLDARGIPVPHE 357
                 58*************85 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.0087
         HeH   7 aqLRriLvehgveyPsnaK 25 
                 ++L++ L ++g+++P  +K
  CCE28353.1 461 SELKTYLDSYGIPVPQGSK 479
                 79*************8877 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.32   7.2e+02      24      43 ..     106     127 ..      77     130 .. 0.68
   2 ?    3.9   0.0     0.031        69      18      42 ..     341     365 ..     340     367 .. 0.92
   3 ?   -3.3   0.0       5.3   1.2e+04      16      34 ..     435     453 ..     430     456 .. 0.75
   4 ?    5.5   0.0    0.0095        21      18      43 ..     461     486 ..     459     488 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.32
   EF-hand_9  24 Lravtaq..dpeeseLeelake 43 
                 L +v ++  ++e+++L+++a+ 
  CCE28353.1 106 LAQVKSNwyETEDAALQGWANA 127
                 4444444446777777777776 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.031
   EF-hand_9  18 srlidyLravtaqdpeeseLeelak 42 
                 srl++yL a + + p+es +++l +
  CCE28353.1 341 SRLKAYLDARGIPVPHESSIDSLRA 365
                 79*******************9975 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.3
   EF-hand_9  16 pvsrlidyLravtaqdpee 34 
                 + + + +yL   ta + +e
  CCE28353.1 435 RFASVTSYLASATASAQQE 453
                 5677899999999977776 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0095
   EF-hand_9  18 srlidyLravtaqdpeeseLeelake 43 
                 s+l++yL   + + p+ s+Le+l+++
  CCE28353.1 461 SELKTYLDSYGIPVPQGSKLEDLKAM 486
                 789********************987 PP

>> Herpes_ori_bp  Origin of replication binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00019      0.43     708     767 ..       4      65 ..       1     114 [. 0.78
   2 ?   -0.6   0.0      0.12   2.6e+02     724     770 ..     178     224 ..     171     246 .. 0.86
   3 ?   -2.5   0.0      0.43   9.7e+02     739     792 ..     259     312 ..     253     327 .. 0.80
   4 ?   -3.5   0.0      0.84   1.9e+03     731     771 ..     453     493 ..     443     496 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00019
  Herpes_ori_bp 708 frllweelFgvrltk.stqtfpgatrvkn.LrkedlealLDaieidrteckthkqLyklLme 767
                    +rl++   F    ++ +   fpg+++v n  ++ +le  L  ++i++++++  k+L +l+ +
     CCE28353.1   4 LRLVFTAYFAFSAAAaASSWFPGSKAVYNkWHQTELERWLADHDISYPKASDRKDLEALVEN 65 
                    799999999988765155679*****999346789*********************998765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.12
  Herpes_ori_bp 724 tqtfpgatrvknLrkedlealLDaieidrteckthkqLyklLmeakr 770
                    t  +pg+  ++    +d++a LD++ i  ++  t  +L +++++++r
     CCE28353.1 178 TAAYPGNWLYQSWSDSDFKAWLDKYGIPVPQPTTRDKLVAAVRRNSR 224
                    6789**********************************999998876 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.43
  Herpes_ori_bp 739 edlealLDaieidrteckthkqLyklLmeakrefskaryklrapdwarslsska 792
                    ++l+ + D+ +i  ++     +L++l+++++ ++    ++ +a+  +    s+a
     CCE28353.1 259 SNLKDFCDKNNIPVPQGTKENELRALIRKHRASMMGDNMQAKASSAMGAATSNA 312
                    578889999999999999999********9999999888888877766665555 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 0.84
  Herpes_ori_bp 731 trvknLrkedlealLDaieidrteckthkqLyklLmeakre 771
                    + +k  + ++l++ LD++ i  ++ +   +L+++ +++   
     CCE28353.1 453 EVFKSWTESELKTYLDSYGIPVPQGSKLEDLKAMARKQYTY 493
                    55688889999999999999999999999999887777655 PP

>> Neprosin_AP  Neprosin activation peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.23   5.1e+02      30      86 ..      93     164 ..      88     193 .. 0.61
   2 ?   10.1   0.1   0.00039      0.87      47     117 ..     243     319 ..     208     320 .. 0.75
   3 ?   -1.7   0.0       1.7   3.8e+03      44      62 ..     365     383 ..     348     389 .. 0.70
   4 ?   -1.5   0.0       1.5   3.4e+03      54      73 ..     487     506 ..     445     509 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.23
  Neprosin_AP  30 kiqekpselpek.akeeskekkekeksvtqlWhq..............sgekCPegTvpirRtteed.llras 86 
                   +q+  +e  ++  ++ +++  e+e+++ q W +              +   C +  +p+ + +++d ll+  
   CCE28353.1  93 DVQTAAEESKDNlLAQVKSNWYETEDAALQGWANakdwildtwsdsqlK-AFCDKQGIPVPQPRQRDsLLQKA 164
                  5555555555554444445555555666666666666666666556533.47999999999988877344432 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00039
  Neprosin_AP  47 kekkekeksvtqlWhqsgek..CPegTvpirRtteed....llrasslkrfgrkkkvkkksarpdsvssnghehAia 117
                   +  + ++s+  +W++s  k  C ++ +p+ + t+e+    l+r ++++ +g + ++k++sa   ++s+ + e+A a
   CCE28353.1 243 AAYATLTDSIIDAWSNSNLKdfCDKNNIPVPQGTKENelraLIRKHRASMMGDNMQAKASSAMGAATSNAKNEYAKA 319
                  4445567788899999644333**********9999878889999999999*9999655555556668888899865 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.7
  Neprosin_AP  44 eeskekkekeksvtqlWhq 62 
                   + +++ +k  s +q+W+ 
   CCE28353.1 365 ATVRKHAHKAASGWQAWTF 383
                  3346677888899999986 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.5
  Neprosin_AP  54 ksvtqlWhqsgekCPegTvp 73 
                   + ++++ + g++ P gTv 
   CCE28353.1 487 ARKQYTYFKYGTSSPAGTVF 506
                  44456777789999999985 PP

>> 6PGD  6-phosphogluconate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.25   5.6e+02      39      73 ..      29      63 ..      26      70 .. 0.75
   2 ?    5.6   0.1     0.004         9      33      76 ..      67     109 ..      54     120 .. 0.83
   3 ?   -2.2   0.2      0.94   2.1e+03      29      44 ..     323     338 ..     280     349 .. 0.46
   4 ?    0.0   0.0       0.2   4.4e+02      37      68 ..     379     410 ..     363     427 .. 0.78
   5 ?    6.0   0.0     0.003       6.7      30      53 ..     444     467 ..     434     481 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.25
        6PGD 39 evFeeWnkgelesyLieitakilrkkdeedgkplv 73
                +v+++W+++ele +L +   +  +++d++d + lv
  CCE28353.1 29 AVYNKWHQTELERWLADHDISYPKASDRKDLEALV 63
                79*************98766666666665555555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.004
        6PGD  33 sneeiaevFeeWnkgelesyLieitakilrkkdeedgkplvdki 76 
                  n+ + + +++Wn  el+ yL e ++++ ++ +e+ +++l+ ++
  CCE28353.1  67 WNDAVVQPYSRWNIAELSAYLREKGQDVQTAAEES-KDNLLAQV 109
                 57888899********************9999874.44666666 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.94
        6PGD  29 vlglsneeiaevFeeW 44 
                 + +   e +++  + W
  CCE28353.1 323 ASHAADEAFNQAMSLW 338
                 2222333333344444 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.2
        6PGD  37 iaevFeeWnkgelesyLieitakilrkkdeed 68 
                  a +F+++++++l+ yL + + +  +k  e++
  CCE28353.1 379 QAWTFDDFSSDNLKAYLSSLGDDAAKKAAEKK 410
                 5669**************99999998776533 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.003
        6PGD  30 lglsneeiaevFeeWnkgelesyL 53 
                 ++ +++  +evF++W ++el++yL
  CCE28353.1 444 ASATASAQQEVFKSWTESELKTYL 467
                 556778899**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       851  (0.047465); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3925.39
//
Query:       CCE28354.1  [L=743]
Description: related to KM-PA-2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   7.1e-103  344.0   1.2   9.8e-103  343.6   1.2    1.2  1  BOP1NT       BOP1NT (NUC169) domain
    3.7e-23   81.4   5.9    2.6e-12   47.0   0.2    5.8  5  WD40         WD domain, G-beta repeat
    1.1e-06   28.8   0.1     0.0036   17.6   0.1    4.2  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.023   13.6   0.0      0.039   12.9   0.0    1.2  1  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> BOP1NT  BOP1NT (NUC169) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.6   1.2  2.2e-106  9.8e-103       1     260 []     127     389 ..     127     389 .. 0.95

  Alignments for each domain:
  == domain 1  score: 343.6 bits;  conditional E-value: 2.2e-106
      BOP1NT   1 YddydhiGYdidgkkimkeakkdeldkllekiddpkawrtvkDkktgkevkLsdeelelikrlqkgelpdeeydpyedvvelftseeeihplseapepk 99 
                 Yd+y+hiGYdi+gkkim++a++++ld+ll++i+ pk w+ ++D++tgk ++Ls++elel++rlq ge+p +++d y+d+v +ft  ee++pls+apepk
  CCE28354.1 127 YDSYPHIGYDINGKKIMRPATGEALDALLDSIELPKGWTGLTDPETGKPLNLSQDELELLRRLQMGEVPVQDHDAYPDMVPYFTGIEETMPLSAAPEPK 225
                 9************************************************************************************************** PP

      BOP1NT 100 rrfipskweakkvaklvrairkgrikl.......ekkekeeeekvydlWedeeeeeeekrkkeehipapklklPgheeSYnPpeeyllteeekkeweea 191
                 rrf+psk+eak++a+lvrai++gri         +++e+ eee++yd+W++ee ++     +  ++papkl++Pg++ SYnPp+eyl+t +e+ +weea
  CCE28354.1 226 RRFVPSKHEAKRIAQLVRAIKEGRILPyrpsvskQEQEDGEEEAYYDIWANEEPRDP----HIMNVPAPKLAPPGYDMSYNPPQEYLPTADERLAWEEA 320
                 *************************9888876543334444499*******999654....4556********************************** PP

      BOP1NT 192 dpedrkknfipqkfeslrkvpaYekfvkerFeRcLDLyLcpRvrkkrlnidpesLlPkLPspkdLkPFP 260
                 +pe+r+k+++p +f++lr+vp+Y +fvkerFeRcLDLyL+pRvrk+rlnidp+sLlP+LP+p+dL+PFP
  CCE28354.1 321 EPEEREKEYLPVRFDALRTVPGYGQFVKERFERCLDLYLAPRVRKNRLNIDPNSLLPQLPKPEDLRPFP 389
                 ********************************************************************9 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.2   5.8e-16   2.6e-12       3      37 ..     392     427 ..     391     427 .. 0.96
   2 ?    1.2   0.0      0.18     8e+02       5      37 ..     561     602 ..     527     603 .. 0.50
   3 !    5.3   0.0    0.0088        39      11      34 ..     618     641 ..     607     643 .. 0.81
   4 ?    2.1   0.0     0.094   4.2e+02       4      37 ..     653     687 ..     650     688 .. 0.76
   5 !   22.6   0.4     3e-08   0.00013       3      37 ..     703     742 ..     701     743 .] 0.84

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 5.8e-16
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 c+++++GH + v+s++fspdg wla+G+dDgtvr+W
  CCE28354.1 392 CQTIFRGHeGRVRSVSFSPDGEWLATGGDDGTVRVW 427
                 899*****777************************* PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.18
                 EEEESSSSEEEEE...................EETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGHssvtsla...................fspdgawlasGsdDgtvriW 37 
                 +tl         +                   f+p+ ++++ ++  + +r +
  CCE28354.1 561 HTL---------SkhlsqipfrrlpglaqtaqFHPSRPLFFVAT-QRMIRCY 602
                 233.........13333333333334445555666666666566.6666655 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0088
                 SSEEEEEEETTSSEEEEEETTSEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtv 34 
                  +++s++ +p g+ ++ Gs+D+ +
  CCE28354.1 618 RWISSFDIHPGGDNIIVGSYDRRL 641
                 4599*****************975 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.094
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  +t + H   ++++++++  +++a +sdDg++ i+
  CCE28354.1 653 YKTMRFHdEAIRAVRYHKVFPLFADASDDGSLQIF 687
                 56788995559***88777788885688***9886 PP

  == domain 5  score: 22.6 bits;  conditional E-value: 3e-08
                 EEEEEESSSS......EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGHss......vtslafspdgawlasGsdDgtvriW 37 
                 +++ l+GH s      v +++++p ++w +s++ Dg +r+W
  CCE28354.1 703 PVKMLRGH-SvvnklgVMDIDWHPRHPWCLSAGADGLCRLW 742
                 68899***.434468888**********888888******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   8.1e-07    0.0036      36      90 ..     398     451 ..     383     453 .. 0.76
   2 ?    0.9   0.1      0.12   5.6e+02      25      60 ..     430     464 ..     428     465 .. 0.76
   3 ?    4.1   0.0     0.013        58      37      61 ..     530     554 ..     519     573 .. 0.81
   4 ?    1.1   0.0      0.11     5e+02      34      66 ..     656     688 ..     627     723 .. 0.82
   5 ?   -1.5   0.0      0.71   3.2e+03      34      64 ..     711     741 ..     674     742 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 8.1e-07
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +++++vrs++++pdg+ La + +dg+vr+  ++  +    ++ ++e+av  ++W 
   CCE28354.1 398 GHEGRVRSVSFSPDGEWLATGGDDGTVRVWAING-HQEWMVKLSAEEAVDNVKWR 451
                  47899***********************998764.33333444444458888886 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.12
  ANAPC4_WD40  25 ngqrvwtleedkedsevrsLaWkpdgklLavaysdg 60 
                  ng++ w + + + ++ v +++W+p+   +  a + g
   CCE28354.1 430 NGHQEWMV-KLSAEEAVDNVKWRPNLATFILAAASG 464
                  67777777.6778899********987777766655 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.013
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdge 61 
                    s ++ L+W+  g +++ +   g+
   CCE28354.1 530 VRSAIKTLHWHRRGDFICSVSPTGQ 554
                  56889*************9987776 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.11
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlld 66 
                     +d+ +r++++++   l+a a +dg++++++
   CCE28354.1 656 MRFHDEAIRAVRYHKVFPLFADASDDGSLQIFH 688
                  5678999**********************9997 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 0.71
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrl 64 
                  +  ++  v ++ W+p       a +dg +rl
   CCE28354.1 711 SVVNKLGVMDIDWHPRHPWCLSAGADGLCRL 741
                  4456677888888888888888888887776 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.7e-06     0.039     189     221 ..     402     434 ..     391     454 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.7e-06
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqvylede 221
                  + + +fspdG  lat   dG+v+ + ++ ++e
  CCE28354.1 402 RVRSVSFSPDGEWLATGGDDGTVRVWAINGHQE 434
                 788899*********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 5604.01
//
Query:       CCE28355.1  [L=118]
Description: related to prefoldin subunit 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-13   50.2   1.1    2.4e-13   49.9   1.1    1.1  1  Prefoldin_2  Prefoldin subunit
  ------ inclusion threshold ------
       0.21   11.7   1.6         16    5.6   0.1    2.2  2  XkdW         XkdW protein
       0.68   10.0  10.6        1.3    9.0   4.1    2.1  2  FlxA         FlxA-like protein
       0.85    9.8   3.6        1.3    9.2   0.7    2.0  2  Fib_alpha    Fibrinogen alpha/beta chain family
        2.3    8.4   6.6        0.7   10.0   1.4    2.1  2  Swi5         Swi5
        2.7    8.3   8.7        7.3    6.9   2.0    2.1  2  THOC7        Tho complex subunit 7


Domain annotation for each model (and alignments):
>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   1.1   8.1e-17   2.4e-13       5     103 ..      17     115 ..      13     118 .] 0.95

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 8.1e-17
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
  Prefoldin_2   5 nkfqqlqqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkeelqkk 102
                   +    qqq+    +qi+ ++++ + + l+l+el +l+++   y+ vG+++ + +++ ++ +Lee+ ++l++ i+ l+++l +le++ ++ ++++ k 
   CCE28355.1  17 TQAVAAQQQIGVTRSQIAAKQREQRLARLTLNELGSLPNEVVTYEGVGKMFASLPLPLLRLKLEEQTKNLDTDIEHLTQRLLYLETTHNNSRDHIEKI 114
                  566788*****************************************************************************************997 PP

                  T CS
  Prefoldin_2 103 l 103
                  l
   CCE28355.1 115 L 115
                  6 PP

>> XkdW  XkdW protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0054        16      74     107 ..      28      62 ..       4      63 .. 0.81
   2 ?    5.5   0.3    0.0059        18      79     106 ..      74     101 ..      70     103 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0054
                 XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXX CS
        XkdW  74 lskeklarkqleelnktlg.nelsklklellalkG 107
                 +++ ++a kq e++  +l+ nel +l  e+++++G
  CCE28355.1  28 VTRSQIAAKQREQRLARLTlNELGSLPNEVVTYEG 62 
                 567889999*99998888769*********99998 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0059
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        XkdW  79 larkqleelnktlgnelsklklellalk 106
                 l+r +lee++k+l  ++++l ++ll l+
  CCE28355.1  74 LLRLKLEEQTKNLDTDIEHLTQRLLYLE 101
                 78999*****************999875 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.1   0.00044       1.3      47      74 ..      15      42 ..       5      49 .. 0.84
   2 ?    5.0   0.5    0.0078        23      16      44 ..      80     108 ..      77     115 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00044
        FlxA 47 kkkqqqliqaQIqqlqaQIaqlqqqqae 74
                 ++q+   q+QI + ++QIa +q++q+ 
  CCE28355.1 15 IETQAVAAQQQIGVTRSQIAAKQREQRL 42
                45788888*****************985 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0078
        FlxA  16 asqiasLqkQiknlqkqLkelsesdeltk 44 
                 ++q+++L   i+ l++ L  l ++ + + 
  CCE28355.1  80 EEQTKNLDTDIEHLTQRLLYLETTHNNSR 108
                 67888888888888888877777755554 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.11   3.2e+02      78     108 ..       7      37 ..       2      57 .. 0.65
   2 ?    9.2   0.7   0.00043       1.3      26      61 ..      79     114 ..      75     117 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHH CS
   Fib_alpha  78 vikksskeleeeilrlketidaqesnirvLq 108
                 +++k+++e+e++ +  +++i  + s+i + q
  CCE28355.1   7 ALHKLAREIETQAVAAQQQIGVTRSQIAAKQ 37 
                 5566666666666666666666666665544 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00043
                 CCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHH CS
   Fib_alpha  26 llkyekdvkkdlekleneleeisnstkeaeelvkei 61 
                 l+++ k++++d+e+l+++l  ++ +++++++++++i
  CCE28355.1  79 LEEQTKNLDTDIEHLTQRLLYLETTHNNSRDHIEKI 114
                 8899*************************9999887 PP

>> Swi5  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3      0.15   4.4e+02      13      28 ..      13      28 ..       5      51 .. 0.51
   2 ?   10.0   1.4   0.00024       0.7       7      43 ..      78     114 ..      76     116 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHHHHH CS
        Swi5 13 eelekelaelkeelke 28
                +e+e++  +++++ + 
  CCE28355.1 13 REIETQAVAAQQQIGV 28
                4444444444444332 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS
        Swi5   7 eleeqleelekelaelkeelkekkdpeetvkrhIklL 43 
                 +leeq+++l++++++l+++l   ++ ++  ++hI+++
  CCE28355.1  78 KLEEQTKNLDTDIEHLTQRLLYLETTHNNSRDHIEKI 114
                 79******************99999*********996 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.0    0.0024       7.3      74     106 ..       9      41 ..       5      53 .. 0.82
   2 ?    5.6   0.6    0.0059        18      77     107 ..      76     106 ..      74     116 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0024
       THOC7  74 eaekeeieseieavreeieelkaqLeearatra 106
                  ++ +eie+++ a++++i   ++q+ +++++++
  CCE28355.1   9 HKLAREIETQAVAAQQQIGVTRSQIAAKQREQR 41 
                 56789*********************9998765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0059
       THOC7  77 keeieseieavreeieelkaqLeearatran 107
                 + ++e++++++ ++ie l+++L    +t++n
  CCE28355.1  76 RLKLEEQTKNLDTDIEHLTQRLLYLETTHNN 106
                 56899*****************999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1126  (0.0628033); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 896.92
//
Query:       CCE28356.1  [L=1971]
Description: related to voltage gated Ca2+ channel [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.1e-117  391.7  81.8    4.4e-40  137.4   6.7    4.8  4  Ion_trans    Ion transport protein
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.053   13.3   0.0    1.8  1  GPHH         Voltage-dependent L-type calcium channel, IQ-ass
      0.055   13.3   1.3       0.55   10.0   0.6    3.2  2  ORMDL        ORMDL family


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   6.7   7.4e-44   4.4e-40       2     244 ..     199     589 ..     198     590 .. 0.92
   2 !   81.8  18.3   7.1e-27   4.2e-23       7     240 ..     626     852 ..     622     857 .. 0.91
   3 !  106.8  14.4   1.7e-34     1e-30       6     241 ..    1057    1331 ..    1049    1333 .. 0.84
   4 !   82.6  18.5   4.1e-27   2.4e-23       4     244 ..    1382    1630 ..    1381    1631 .. 0.94

  Alignments for each domain:
  == domain 1  score: 137.4 bits;  conditional E-value: 7.4e-44
                 HHHHHHHHHHHHHHHHHHHCCCSSSS.....HHHHC...HHHHHHHHHHHHHHHHHHHHHHHHHTH................................. CS
   Ion_trans   2 svfelfilllillncvflaletyfpe.....delek...tileilelvftaiftlemllkilalgl................................. 59 
                 ++ e fil+li+l++v+la e++++      +++++   + ++++ l+   +ftle+  +i++ gl                                 
  CCE28356.1 199 PYTEPFILVLIVLQTVLLATESAPDVfidghQRPDRwgkQSMDWIMLALFTVFTLELMARIVVSGLffnaaeystidrkkgmraafidqyrtafgpqrq 297
                 67788***************999988998875555577799**********************99999******************************* PP

                 .........................................HHHHHHCHSHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHGGGGGGHHHCHSH CS
   Ion_trans  60 .........................................likkrYlrdpwnilDflvvlpsllslvlse...esllllsvlrlfrvlrllklisrle 114
                                                          l ++ +lr+ +n+lDf++v+ +++sl l     es  +++v++++ +lr+l+l+  + 
  CCE28356.1 298 rsfkkhhhlepqqsafsrslttlmqgqqslpptieeqqrlqLARRAFLRHSFNRLDFIAVISFWISLSLGItgtESERHIYVFKMLSCLRILRLLALTH 396
                 ****************************************999************************44444557889999999999999999999999 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC...................................................... CS
   Ion_trans 115 glrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek...................................................... 159
                 g  +++++l+++++ l+++++l+++++++fa+ig+q fk +l ++                                                      
  CCE28356.1 397 GTAIILRSLKKAAPLLVRIAFLVCFFWLLFAIIGIQSFKSSLSRQcvwqdpqdpwnfsalytnemefcggyldnqtgrtmpwvklrtpdtlegifngav 495
                 99************************************99999889**************************999999999999998888888887776 PP

                 .........CCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 160 .........necaktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqeltere 244
                          ++ + +++np ng+ nFdn+ ++l  +f++++ + + d++y t+ + +  a ++f++ i+++ ++l Nlliavi+++fq ++e++
  CCE28356.1 496 dgkgficprGSICLQQKNPYNGTVNFDNIANSLELVFVIISANTFSDLMYFTMASDYLQAALFFGAGIMIMLLWLTNLLIAVITSSFQVIREES 589
                 6555555443366999************************************************************************999876 PP

  == domain 2  score: 81.8 bits;  conditional E-value: 7.1e-27
                 HHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG CS
   Ion_trans   7 filllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlseesllllsvlrlfrvlr 105
                 + +l+i++ ++f  l+++++++e e  +++++e+v+t +  l+++l++++      + + rd+ n++D+l ++ + + l +  ++  + + l +f++lr
  CCE28356.1 626 IWVLTIMIGLLFQSLRSSKMSHERE-RLITVAEIVVTTLLDLDIFLRLVS-DW---RGFRRDWRNLFDILLAVATTIMLLPPIQNTRAYQWLTVFQILR 719
                 5589*****************9999.***********************8.55...799******************9955555678888888888888 PP

                 GGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHH CS
   Ion_trans 106 llklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdilyatld 204
                 + +++  ++  r l+  +++ +  + n++l+++++ f+ a+++ qlf g++        + e+++  +++F ++ +++l + +++++e+w++ily +++
  CCE28356.1 720 AYRIVLAIPVTRKLILLVLGNAAGIANLMLFVFLMTFLIAIFASQLFRGQIP-------KYEGDELVKISFFTIYNSFLGMYQILSSENWTQILYSVTS 811
                 88888888888889999******************************77777.......67777888999***************************** PP

                 HS.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 205 ek.....skvaliyfvifiilgsflllNlliaviadnfqel 240
                  +      +++ i+++ ++il+ ++l+N++iavi++nf+  
  CCE28356.1 812 HSkashtAWIGAIFLIGWFILSFLILVNMFIAVIQENFDVS 852
                 99************************************865 PP

  == domain 3  score: 106.8 bits;  conditional E-value: 1.7e-34
                  HHHHHHHHHHHHHHHC..CCSSSS..HHHHC....HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHH....HHHH CS
   Ion_trans    6 lfilllillncvflal..etyfpe..delek....tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllsl....vlse 89  
                   +++ +++l+cv+ +l  +    +  ++       ++  + +l+ft +ft+e+++k +a gl   +  Y+r+ w ++D +v+++ ++ +    +   
  CCE28356.1 1057 AVVVAMVILACVTTPLyqK---GYkeQH--PsndwNWYVWTDLAFTSVFTIEAIIKSIADGLfWTPNAYMRSSWGFIDGMVLITLWINVvtllI--- 1145
                  4556777899999998322...222222..13469***************************999999*******************9955442... PP

                  HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC.............CC..........S CS
   Ion_trans   90 esllllsvlrlfrvlrllklisrleglrtlvta.lirsvkdllnvlllllvvlfifaligvqlfkgklrek.............ne..........c 162 
                  +   + +++ +f+ lr+l+l++ +++ r + ++ +i    +l   +l++l +l+ fa+ g++lf+g + ++             +e           
  CCE28356.1 1146 NDGAISRAVGAFKALRALRLLNVSDSARDTFHSlIIIGWWKLTGAALISLSLLIPFAIYGLNLFNGLMVRCndstnietlnacfGEyssspfssdwP 1242
                  5689999*******************99888861556678*******************************77776666655551155667777886 PP

                  CCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  163 aktwenpnngntnFdnfftallwlfrlmttegwgdilyatldek..........skvaliyfvifiilgsflllNlliaviadnfqelt 241 
                    + + + n+++nFd+f+++l++lf++ ++egw+d+  a +                + i+fvif++l+++++l l+i v + n+ e+t
  CCE28356.1 1243 MLSPRVASNPYYNFDDFGSSLFTLFQIVSQEGWTDVSFAAQAIVgrgmqpqdlfAQGNAIFFVIFNLLATVFVLTLFISVFMRNYTEQT 1331
                  6667777888**************************9998888899***************************************9997 PP

  == domain 4  score: 82.6 bits;  conditional E-value: 4.1e-27
                  HHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH....HHHHHHHHHHH CS
   Ion_trans    4 felfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl....vlseeslllls 96  
                  +   i+++++ ++++l++e++ ++ + + +  e++ l+++ +++  ++++i++lg     r+ ++ w +  + +v+ ++l      ++++ +  +++
  CCE28356.1 1382 WYQAITIILVFHLLLLMVEFSSEPFWWT-KTREVMFLLCILVYLNNIAIRIVGLGW---ARFRKSSWDLYSLASVSGAFLATmalmIADSRADASVQ 1474
                  566788999999************8888.889999*********************...********************96656663333789**** PP

                  HHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTS CS
   Ion_trans   97 vlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmtte 193 
                  + ++f v+ +l li r + l  l ++ + s+  ++n+l  +lv++++fa+++ q f         + ++  +++  ++nF+++++al+ lfr+  +e
  CCE28356.1 1475 LHKFFLVAIVLLLIPRNDALDQLFKTAAASLTIIGNLLATWLVCFLVFAIAMTQAF---------SLTRFGDNETADINFRSVPKALILLFRMSLGE 1562
                  ********************************************************.........66788889999********************* PP

                  SHHHHHHHHHHHS.................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  194 gwgdilyatldek.................skvaliyfvifiilgsflllNlliaviadnfqeltere 244 
                  gw++i+ +    +                 + +a ++fv+++i+++++++Nl++ +i ++f+++++r+
  CCE28356.1 1563 GWNQIMEDYAAIRpplcvgeskffdsdcgsKAWARFLFVAWNIISMYIFVNLFVSLIYESFSYVYQRS 1630
                  **********999*****************************************************97 PP

>> GPHH  Voltage-dependent L-type calcium channel, IQ-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.8e-06     0.053       1      30 [.    1643    1672 ..    1643    1673 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.8e-06
        GPHH    1 eFvrvWaeyDPeAtgrikvqdmyellrrls 30  
                  +F+++W ++DP+ tg+i+ ++   ll +ls
  CCE28356.1 1643 RFKEAWRNVDPAGTGFISKEQFPRLLGELS 1672
                  7*********************99999876 PP

>> ORMDL  ORMDL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.6   9.2e-05      0.55       8      54 ..    1377    1424 ..    1372    1428 .. 0.84
   2 ?   -2.7   0.0      0.78   4.6e+03      58      84 ..    1842    1868 ..    1818    1874 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.2e-05
       ORMDL    8 nskglwviyiviilllkllllalpgvseevawtltn.lvhnlvtyill 54  
                  +++g w   i iil+++llll++ + se + wt t  +++ l+ +++l
  CCE28356.1 1377 EKRGKWYQAITIILVFHLLLLMVEFSSEPFWWTKTReVMFLLCILVYL 1424
                  7899*****************************985266666666665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.78
       ORMDL   58 kGtPfetadqgeydeltlWEQidegeq 84  
                   G+ +++ +qg++     W Qi  ge 
  CCE28356.1 1842 FGNGIDQISQGRIGGQPRWTQISAGEG 1868
                  588889999*************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1971 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.10u 0.26s 00:00:01.36 Elapsed: 00:00:00.45
# Mc/sec: 13263.80
//
Query:       CCE28357.1  [L=84]
Description: uncharacterized protein CPUR_01832 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 621.83
//
Query:       CCE28358.1  [L=785]
Description: related to tRNA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-84  280.9   0.0    1.5e-83  280.0   0.0    1.5  1  RNA_lig_T4_1     RNA ligase
    1.8e-71  240.6   0.0    2.7e-71  240.0   0.0    1.2  1  tRNA_lig_CPD     Fungal tRNA ligase phosphodiesterase domain
    1.7e-50  171.4   0.0    3.2e-50  170.5   0.0    1.4  1  tRNA_lig_kinase  tRNA ligase kinase domain
  ------ inclusion threshold ------
      0.082   12.8   0.0       0.19   11.6   0.0    1.6  1  2_5_RNA_ligase2  2'-5' RNA ligase superfamily


Domain annotation for each model (and alignments):
>> RNA_lig_T4_1  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.0   0.0   3.3e-87   1.5e-83       2     220 .]      70     304 ..      69     304 .. 0.96

  Alignments for each domain:
  == domain 1  score: 280.0 bits;  conditional E-value: 3.3e-87
  RNA_lig_T4_1   2 aRGLfteenke...erIvvRgydKFFNinEveetkweeieqktqgpyelteKenGclilisalsdgklvvaSkhsl.....eaeshaevgerllekk 90 
                   aRGLft  +++    +I++RgydKFFN++Ev+et+w++i ++t+ pyelt+KenGc+i++s+l+dg+l+v+Skhs+      + sh+ +ger+le++
    CCE28358.1  70 ARGLFTVPQTDrqqPQIAIRGYDKFFNVDEVHETTWKNIMSNTRPPYELTLKENGCIIFLSGLEDGTLLVCSKHSTgerdgIQVSHSSAGERHLERQ 166
                   9*****988877767**************************************************************9999889************* PP

  RNA_lig_T4_1  91 lekegkteeeLaeelleknlTavfElcddsfeehivaypeekagLyLhglnentpefstesseevakfakefgfiktklitlesleevkkfleevae 187
                   l+k gkt+ +La+el+++n+Tav+Elcdd+feeh++ay + +agLyLhg+n n p+f+t++s+ v++fa+++gfi+t l  l++++evk+fleeva+
    CCE28358.1 167 LAKLGKTKSDLAKELRSRNATAVAELCDDEFEEHVLAYDTGRAGLYLHGINLNLPDFVTYPSSFVQTFADDWGFIRTGLRVLDDVQEVKDFLEEVAQ 263
                   ************************************************************************************************* PP

  RNA_lig_T4_1 188 tgswegeeiEGfVvrcksk..k......dffFklKfkepyy 220
                   tgs+eg+e+EGfV+rck++  +      d+fFk+Kf+epy+
    CCE28358.1 264 TGSHEGREVEGFVIRCKRStdPtsrpfqDWFFKFKFEEPYL 304
                   ****************776551566788************7 PP

>> tRNA_lig_CPD  Fungal tRNA ligase phosphodiesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.0   0.0   6.1e-75   2.7e-71       2     252 ..     557     781 ..     556     782 .. 0.95

  Alignments for each domain:
  == domain 1  score: 240.0 bits;  conditional E-value: 6.1e-75
  tRNA_lig_CPD   2 SreNletvvneLhkkyPkLvkevPsaeeldeAieaaleeYkpeikksisksskkkkkkkkkekkekskkkkkkkleYfsvsvptaevnslleslfke 98 
                    r+Nlet v+ Lh+++P L+++vP  e+ d+A+e+al +Y+p++++si+++++ k+               +k+leY+sv+v ++e+n++le++f  
    CCE28358.1 557 TRQNLETTVSSLHQHFPCLIDKVPLPEQYDAAMESAL-KYRPTFRHSIPDRNTVKNG--------------NKRLEYISVDVASHELNDVLEKTFG- 637
                   69***********************************.***********99777666..............579**********************. PP

  tRNA_lig_CPD  99 ksaseekarlykqlkqsrriqpefHvTLiHraskkeekelWekytklykealaeakskkskesaelgevkvrlerlvwddrimaivvrlleeeeele 195
                    + s++++r+y+qlk++rriq++fHvTL+Hra+++e+++lW++y++  ++  +++        ++lg++++++er+v+ddr+m++vvrll++  ++e
    CCE28358.1 638 -ECSSHVSRFYTQLKETRRIQSKFHVTLMHRANSAERNDLWQRYVQAWESSGRSD--------QPLGRCNLMVERIVFDDRLMTLVVRLLDDAVQWE 725
                   .55569*****************************************99999332........359************************99999** PP

  tRNA_lig_CPD 196 cankvpHiTvgtaseevkpkeSNdLlkrwleegsgeetgikeleiegkkvlegsVki 252
                   c+n+v+HiTvgt+++++kpkeSNdLl+rw++eg+ ++ +i+e+ +e+++vl+g Vk+
    CCE28358.1 726 CVNRVSHITVGTRDSTIKPKESNDLLERWIKEGA-KDGDITEILLEDQPVLQGVVKG 781
                   **********************************.59******************97 PP

>> tRNA_lig_kinase  tRNA ligase kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   0.0   7.2e-54   3.2e-50       1     166 [.     396     552 ..     396     554 .. 0.97

  Alignments for each domain:
  == domain 1  score: 170.5 bits;  conditional E-value: 7.2e-54
                      EEEEE--TTSSHHHHHHHHHHH-TTSEEEEGGGS-TT.-SS-HHHHHHHTTSSTT--EEEEES---SHHHHHHHHHHHHHHHHHH--TT-EEEE CS
  tRNA_lig_kinase   1 llvpiatiGCGkttvaltlenlfgeWghvqnDnitgk.dkkklvkealellkkdeskvvlvDrnnhqkreRkqlfeeidelkeeylsydvnvkv 93 
                      ++ piatiGCGktt al+l++lfg WghvqnDni+gk ++ ++v+++l+ l  ++  vv++Drnn++k eR+ql+++++  +        + k+
       CCE28358.1 396 IICPIATIGCGKTTLALALTQLFG-WGHVQNDNISGKgRPPRFVRAILDDL--QNRPVVFADRNNAAKYERRQLITDVKFHNP-------TAKI 479
                      789*********************.************9*************..8899********************987766.......79** PP

                      EEEE-S-TT.-HHHHHHHHHHHHH-------------.-HHHHHHHHHHHHHT-----TTSTTGGG-SEEEE-- CS
  tRNA_lig_kinase  94 valsFvded.dleevreltkdRvlkRGdnhqsikvesedekkvkkimegfikrfqpvnkekepDnkfDlvielk 166
                      v+l+F +e+ + +++r +t+ Rvl+RGdnhq+i+++s d+++  ++m+gfi+rf+++ +  +pD+ fDlvi+l+
       CCE28358.1 480 VCLNFCHEEsSIDNIRSVTRARVLARGDNHQTIHAAS-DKNRFFDVMDGFINRFEACAPFTNPDSGFDLVIDLD 552
                      *******99899*************************.**********************************98 PP

>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.2e-05      0.19      46     134 ..     588     685 ..     542     706 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.2e-05
  2_5_RNA_ligase2  46 llsrlaketepfevrldgfgvFeh.kksvvylsvsdsealqalraallealpeagdkeds..........geftPHlTiaqsadstsaaellek 128
                      +++ ++k  ++f+ ++   ++     k+  y+sv  + a ++l++ l++ ++e+ + +++           + ++H+T+ ++a+s++  +l+++
       CCE28358.1 588 AMESALKYRPTFRHSIPDRNTVKNgNKRLEYISV--DVASHELNDVLEKTFGECSSHVSRfytqlketrrIQSKFHVTLMHRANSAERNDLWQR 679
                      5555555555566666555555443444666666..566688999999999999777777888888888999*******************998 PP

  2_5_RNA_ligase2 129 laqalp 134
                        qa++
       CCE28358.1 680 YVQAWE 685
                      855554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5320.53
//
Query:       CCE28359.1  [L=454]
Description: uncharacterized protein CPUR_01834 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        5.9    6.3   6.0         10    5.5   6.0    1.5  1  Sec62       Translocation protein Sec62


Domain annotation for each model (and alignments):
>> Sec62  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.0   0.00058        10      10      71 ..     313     387 ..     259     437 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00058
       Sec62  10 kvvralksekekkkskkkkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkee.............k 71 
                 +  ++ ++e+e++++++k+e ++ ++++++a+ + +++ +s+   r ++l+e++ ++++ +              
  CCE28359.1 313 RTEKQRQEEEEREQRRRKHEAEQAERSEKQAQMKAEQERESRAFSRHQRLHERDIRRRQYTeelahlsqgskgaV 387
                 333333334444444444444444444444445555555555555555555555554443355555554444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2347  (0.130905); expected 358.6 (0.02)
Passed bias filter:                      720  (0.0401584); expected 358.6 (0.02)
Passed Vit filter:                       144  (0.00803168); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 3241.81
//
Query:       CCE28360.1  [L=318]
Description: related to ATP phosphoribosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-58  195.0   0.1    1.1e-57  194.4   0.1    1.3  1  HisG      ATP phosphoribosyltransferase
    6.2e-28   96.8   0.1    1.2e-27   95.8   0.1    1.5  1  HisG_C    HisG, C-terminal domain


Domain annotation for each model (and alignments):
>> HisG  ATP phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.4   0.1   1.3e-61   1.1e-57       1     160 []      58     240 ..      58     240 .. 0.93

  Alignments for each domain:
  == domain 1  score: 194.4 bits;  conditional E-value: 1.3e-61
                 -GGGHHHHHHTTSSSEEEEEHHHHHHC............T...TEEEEEEESESEEEEEEEEETTSS--SGCGG.TT-.EEEEES-HHHHHHHHHHT.. CS
        HisG   1 raadiptyVeegavdlGitGkDvveEs............keeeeveelldLgfgkcklvvavpeesevkslkdlvedkgkriaTsypnlakkyfeek.. 85 
                 +aadipt+V++g+vdlGitG+D+v+E+            +++  +++++dL+fg+ckl+v+vpe+ ++++ +dl   +gk+i+Ts+++la++yf+++  
  CCE28360.1  58 PAADIPTFVGQGRVDLGITGWDQVKEHdasvqgfeadgdGAKPGCDMVMDLEFGTCKLQVQVPEKGSYTNCSDL---IGKTIGTSFVHLAAEYFARLes 153
                 699***********************888999******98889*********************9999999988...899*****************88 PP

                 .............T-EEEEEE-SS-CTHHHHTTS-SEEEEEESSSHHHHHTTEEEEEEEEEEEEEEEEEHHHHHSHHHHHHHHHHHHH CS
        HisG  86 .............glkveiiklsGsvEaapalglaDaIvDlvetGeTLrangLkaietilessavLiankkslkkkekieellerlrg 160
                               l+++i++lsGsvEaa+alg+aD+IvDlve+GeT+ra+gLkai+t++es+avLi +k s++k e++e +++r+rg
  CCE28360.1 154 tsdaenstkaekaPLRTKIVELSGSVEAACALGVADGIVDLVESGETMRAAGLKAIDTVIESTAVLIKSK-STSKAELVELIASRIRG 240
                 8888888888777779***************************************************555.555599*********96 PP

>> HisG_C  HisG, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.1   1.4e-31   1.2e-27       1      73 []     244     316 ..     244     316 .. 0.99

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 1.4e-31
                 TTTEEEEEEEEEGGGHHHHHHH---SSS-EEEE-.SS-EEEEEEEEECCCHHHHHHHHHCTT-EEEEEEE-S- CS
      HisG_C   1 ArkyvllmynvpkesleevlkilPGlrsPTvspladegwvaVsavveekevaevideLkaaGAsdIlvlpiek 73 
                 A+++vl++yn+++++l+e+++i+PG+r+PTv++l+++gwvaVs++ve+k++a v+deL ++GAsdI+vl i++
  CCE28360.1 244 AQRHVLCQYNIERSRLPEACRITPGKRAPTVTTLDEDGWVAVSSMVEKKKIAIVMDELSRVGASDIIVLAIHN 316
                 89********************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2439.11
//
Query:       CCE28361.1  [L=105]
Description: uncharacterized protein CPUR_01836 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 821.00
//
Query:       CCE28362.1  [L=770]
Description: probable sphingolipid long chain base kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-25   89.3   0.0    2.9e-25   88.3   0.0    1.6  1  DAGK_cat  Diacylglycerol kinase catalytic domain


Domain annotation for each model (and alignments):
>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   1.6e-29   2.9e-25       2     125 ..     129     258 ..     128     259 .. 0.92

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 1.6e-29
                 EEEEE-TTCTTTTHHHHH.HHCHHHHHHCTCEEEEEE--STTHHHHHHHHHHHCC-SEEEEEESHHHHHHHHHHHCT.....HHCTTSEEEEEE-SS-- CS
    DAGK_cat   2 llvivNpksGkgkgekll.rkvrelleeagvelelieteepgdakelakeakeegvdlivvaGGDGtvsevlnglle.....elatkpplgiiPlGtgN 94 
                 ++v++Np+sG g + + + r v +l++ a + le+++ ++ g+a ++a++++ e++d+iv+++GDGt +e++ngl++     ++ +++p+++iP+G+gN
  CCE28362.1 129 AYVLINPQSGPGGALRKWkRDVLPLFQAARMVLEVVTLKRGGEAADIAENMDLEKYDTIVACSGDGTPHEIFNGLAKrpdaaRALSQMPVSMIPCGSGN 227
                 79********665555555**********************************************************9999888999************ PP

                 HHHHHCT--SSHHHHHHCHHCTBEEEEEEEE CS
    DAGK_cat  95 dlaralgigkdieealesiikgetrkvdvgk 125
                 +++ +l     +  a+ +iikg++ ++d+++
  CCE28362.1 228 AMSCNLYGTHRAALAALAIIKGRVIPLDLIS 258
                 ******55558888999999********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5878.81
//
Query:       CCE28363.1  [L=726]
Description: related to acetyltransferase 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-189  631.4  32.8   4.5e-189  629.6  23.1    2.5  3  NARP1            NMDA receptor-regulated protein 1
    1.7e-18   65.7  31.9     0.0014   19.3   2.6   12.7 13  TPR_14           Tetratricopeptide repeat
    3.3e-17   62.8  28.3     0.0047   17.6   6.7    9.3  9  TPR_16           Tetratricopeptide repeat
    1.8e-16   59.5  12.5      6e-06   25.8   0.0    7.2  7  TPR_11           TPR repeat
    1.9e-15   55.9  13.7    2.2e-05   24.1   0.2    9.0  8  TPR_1            Tetratricopeptide repeat
    2.6e-14   52.1  32.8    0.00098   19.1   0.1   11.7 12  TPR_2            Tetratricopeptide repeat
    4.6e-14   52.7  43.7    0.00035   21.0   0.6    8.7  8  TPR_19           Tetratricopeptide repeat
    2.8e-11   43.0  10.0      0.038   14.4   0.0    8.3  7  TPR_17           Tetratricopeptide repeat
    3.1e-11   43.3  16.2    0.00021   21.4   0.6    4.3  3  ANAPC3           Anaphase-promoting complex, cyclosome, subun
      6e-09   35.9   8.9      0.051   13.7   0.1    7.3  9  TPR_9            Tetratricopeptide repeat
    8.3e-08   31.9  30.0    0.00058   19.9   0.1   10.2 11  TPR_8            Tetratricopeptide repeat
    3.5e-07   30.4  29.0      0.087   13.1   3.5    8.5  9  TPR_12           Tetratricopeptide repeat
    5.1e-06   26.6  11.4        4.6    8.1   0.0    6.6  6  TPR_4            Tetratricopeptide repeat
     0.0024   17.3   0.6     0.0024   17.3   0.6    2.5  2  Inj_translocase  DNA/protein translocase of phage P22 injecto
     0.0031   16.8   0.9     0.0031   16.8   0.9    4.4  5  TPR_15           Tetratricopeptide repeat
     0.0063   16.5  17.6        9.9    6.5   0.0    8.1  7  TPR_7            Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.033   14.6  10.9      0.037   14.5   4.0    3.9  3  BTAD             Bacterial transcriptional activator domain
      0.074   13.1  13.7        9.2    6.4   0.1    6.3  6  Fis1_TPR_C       Fis1 C-terminal tetratricopeptide repeat
        3.2    8.6  27.4        1.5    9.6   0.1    9.1 10  TPR_6            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.2    0.0008      0.75     206     257 ..      23      74 ..      10      78 .. 0.88
   2 ?   -2.5   0.1       1.9   1.8e+03      53      83 ..      92     128 ..      84     179 .. 0.57
   3 !  629.6  23.1  4.8e-192  4.5e-189       2     515 .]     185     684 ..     184     684 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0008
                 T-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCTT CS
       NARP1 206 gsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeearklDl 257
                 +++++ l++ d  ++++p+  + + +Ka i+  +G  ++A ++ +ea + D 
  CCE28363.1  23 KQYKRGLKMADLILKKNPKHGDTMAMKALIFNSQGKTDEAFALGKEALRADM 74 
                 567799************************************9999988776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.9
                 -HHHHHHHHHHHHHH-TT-CHHHHHHHHHT....... CS
       NARP1  53 rkeeAeatyeaLlernpenskYyeglekak......k 83 
                 ++eeA ++y+  l+  pe+ + +++l + +      +
  CCE28363.1  92 NFEEAIKAYKFALKLEPESAQIQRDLATLQiqmrdyD 128
                 5566666666666666666666666655443333221 PP

  == domain 3  score: 629.6 bits;  conditional E-value: 4.8e-192
                 HHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-CHHHHHHHHHT..SSS-HHHHHHHHHHTT CS
       NARP1   2 eesellLyknqiieeagkleeAlehLeekekqivDklavketkaelllkLgrkeeAeatyeaLlernpenskYyeglekakklskedeeallalydela 100
                 e+se+++ykn +i+ +g++e+Al hL+++ k+ vD+lav+e +a +llkLgr++eA+++y+aLl+rn+++++Yye+l  a+++s++d+ea++a+yde+a
  CCE28363.1 185 ENSEAVMYKNVLIAAQGDYERALTHLNTACKHNVDRLAVLESRAGYLLKLGRHDEAAKAYRALLDRNADHTEYYEQLAVALQISEQDIEARKAMYDEYA 283
                 89************************************************************************************************* PP

                 TS-TT-SHHHHTHHHH--HHHHHHHHHHHHHHHHHCT-TTHHHHHGGGGGGSCHHHHHHHHHHHHHTTTTTSSSSTTGG.GSS----SSHHHHHHHHHH CS
       NARP1 101 ekyprsdaprRlpLdfleGeeFkelvdkYlrkaLrkgvPslfanlksLYedkeKvkileelvegyvkslktsgklsesdnedsekepesallwvlyflA 199
                 +k+pr+da+rR+pLdfl+G++Fke++d+Yl+ +L+kgvPs+fanlk+LY+d +K++ l  l+++y +s++t+ + +         + e+a   +lyflA
  CCE28363.1 284 KKFPRCDAARRIPLDFLSGDAFKEAADTYLTSMLNKGVPSTFANLKHLYSDASKKEQLASLAQKYLESQSTETESKD--------KGEAA---ALYFLA 371
                 ******************************************************************99887765543........34566...79**** PP

                 HHHHHHT-SH..HHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCTTT-HHHHHHHHHHHHHTT-HHHHHHHHTTTS-TTS..HHH CS
       NARP1 200 qhydklgsre..kAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeearklDlaDRyiNskcakymLradeveeAeetvslFtreev..dal 294
                 qhy+++ sr+  kA+eyidkai+++ ++v++++tKarilkh+Gd+ +Aa++m++ar+lDl+DRyiNsk+aky+Lr++e+e+A +tv+lFtr e   ++l
  CCE28363.1 372 QHYNYHLSRDlaKAMEYIDKAIDKDSNSVDFHMTKARILKHQGDIGAAAAMMDTARRLDLKDRYINSKAAKYQLRNNENEKALKTVGLFTRSENggGPL 470
                 ********9999*******************************************************************************988789** PP

                 HHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHT-HHHHHHHHHHHCTTT-SHHHHHHHHHHHHHHHHHHH-TTGG CS
       NARP1 295 edlnemqcmWfetedgeaylrqkklglALKrfhavekhFdeieeDqFDFHtyclRkmtlraYvdllrledelrshpfyvkaakgaievYlkledkpkak 393
                 +dl +mqc+W++tedgeay+rq+++glALKrfhav ++Fd+++eDqFDFHt++lRk++ raYvd++++ed++r+hpfy +aa +ai++Y+++ d+ +a+
  CCE28363.1 471 ADLLDMQCIWYLTEDGEAYARQGNIGLALKRFHAVITIFDVWQEDQFDFHTFSLRKGQTRAYVDMIKWEDHVRDHPFYSRAALNAIKLYMEMSDRKLAN 569
                 ************************************************************************************************999 PP

                 G---HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......-------------S-SSSTTTT-S-HHHHHHHHHTTTGGGTTT-THHH CS
       NARP1 394 eeekeeaksaelseaerkklrkkakkaekkaekeeaekaekekekkaaekkakkedeeakkededplgekLvkteepLeeAlkflkpLlklaaenieth 492
                  ++  +a+++  ++   kk +kkakk+ ++ e+eeaek++k++       ++ k++++a+k+d+dplg kL++t +pLeeA+k+l+pLl+ ++++++++
  CCE28363.1 570 GANGINASNG-DDALAAKKNAKKAKKELQRIEREEAEKQAKQDP------NKPKQESDATKKDDDPLGLKLAATPDPLEEAMKLLTPLLQACPKSVHVQ 661
                 9888877666.57778899999***************8887755......345567788899************************************* PP

                 HHHHHHHHHTT-HHHHHHHHHHH CS
       NARP1 493 llafevyiRkkklllalkalkka 515
                  ++fe ++R++kl++al++l++a
  CCE28363.1 662 HAGFEAFVRRNKLVAALRCLNAA 684
                 ********************997 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.67   6.3e+02      14      41 ..      22      49 ..      11      52 .. 0.83
   2 ?    6.0   0.0     0.026        25       6      42 ..      48      84 ..      44      86 .. 0.85
   3 !   17.1   0.0   7.6e-06    0.0072       4      43 ..      80     119 ..      77     120 .. 0.93
   4 ?    4.8   0.0     0.065        62       4      27 ..     148     171 ..     145     180 .. 0.87
   5 !    8.8   0.0    0.0035       3.3      10      38 ..     195     224 ..     188     228 .. 0.82
   6 !   19.3   2.6   1.4e-06    0.0014       7      43 ..     227     263 ..     221     265 .. 0.92
   7 ?    2.3   0.3      0.41   3.9e+02       6      38 ..     260     293 ..     257     295 .. 0.78
   8 ?    7.4   0.1      0.01       9.4       2      43 ..     365     408 ..     364     409 .. 0.81
   9 ?    4.6   0.1     0.077        72       5      35 ..     404     434 ..     400     443 .. 0.84
  10 ?    1.7   0.0      0.66   6.2e+02       8      29 ..     486     507 ..     484     516 .. 0.88
  11 ?   -1.2   0.5       5.6   5.3e+03      10      29 ..     582     601 ..     581     610 .. 0.80
  12 ?    3.0   0.0      0.25   2.4e+02      17      36 ..     640     659 ..     633     664 .. 0.83
  13 ?    4.7   0.1     0.071        67       9      38 ..     666     695 ..     659     705 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.67
      TPR_14 14 lGdpdeAiallrralalaPddaeawlll 41
                  ++++ +++++ +l+++P++ ++  + 
  CCE28363.1 22 EKQYKRGLKMADLILKKNPKHGDTMAMK 49
                57999**************987666555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.026
      TPR_14  6 alaeallalGdpdeAiallrralalaPddaeawllla 42
                + a ++  +G++deA al ++al+++ ++   w  ++
  CCE28363.1 48 MKALIFNSQGKTDEAFALGKEALRADMKSHICWHVYG 84
                55778999*****************999988887776 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 7.6e-06
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +  ++ +++   +++eAi++++ al+l P++a++++ la 
  CCE28363.1  80 WHVYGLLYRSCKNFEEAIKAYKFALKLEPESAQIQRDLAT 119
                 778999******************************9996 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.065
      TPR_14   4 llalaeallalGdpdeAiallrra 27 
                 + ala a+  +G+p eA+ +l  +
  CCE28363.1 148 WTALAIAHHLSGNPSEAESVLTTY 171
                 889***************998665 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.0035
      TPR_14  10 al.lalGdpdeAiallrralalaPddaeaw 38 
                 +l +a+Gd+++A+++l+ a++++ d ++++
  CCE28363.1 195 VLiAAQGDYERALTHLNTACKHNVDRLAVL 224
                 563579****************99988775 PP

  == domain 6  score: 19.3 bits;  conditional E-value: 1.4e-06
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +a +ll lG++deA++++r++l+++ d+ e++ +la 
  CCE28363.1 227 RAGYLLKLGRHDEAAKAYRALLDRNADHTEYYEQLAV 263
                 7899******************************996 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.41
      TPR_14   6 alaeallalGdpdeAia.llrralalaPddaeaw 38 
                 +la al  +++  eA++ +++++ +++P  ++a+
  CCE28363.1 260 QLAVALQISEQDIEARKaMYDEYAKKFPRCDAAR 293
                 677777777776677776**********999987 PP

  == domain 8  score: 7.4 bits;  conditional E-value: 0.01
      TPR_14   2 eallalaeal..lalGdpdeAiallrralalaPddaeawlllaq 43 
                 +al+ la+ +    ++d+++A+++ ++a++++ ++ ++++  a+
  CCE28363.1 365 AALYFLAQHYnyHLSRDLAKAMEYIDKAIDKDSNSVDFHMTKAR 408
                 6889999987323579***************9999888877776 PP

  == domain 9  score: 4.6 bits;  conditional E-value: 0.077
      TPR_14   5 lalaeallalGdpdeAiallrralalaPdda 35 
                 +  a++l ++Gd  +A+a+ + a +l+ +d+
  CCE28363.1 404 MTKARILKHQGDIGAAAAMMDTARRLDLKDR 434
                 56799****************9999887775 PP

  == domain 10  score: 1.7 bits;  conditional E-value: 0.66
      TPR_14   8 aeallalGdpdeAiallrrala 29 
                 +ea++++G+   A++ +++++ 
  CCE28363.1 486 GEAYARQGNIGLALKRFHAVIT 507
                 689***********99999875 PP

  == domain 11  score: -1.2 bits;  conditional E-value: 5.6
      TPR_14  10 allalGdpdeAiallrrala 29 
                 al+a  + ++A + l+r+ +
  CCE28363.1 582 ALAAKKNAKKAKKELQRIER 601
                 788899999******99966 PP

  == domain 12  score: 3.0 bits;  conditional E-value: 0.25
      TPR_14  17 pdeAiallrralalaPddae 36 
                 ++eA++ll  +l+++P++  
  CCE28363.1 640 LEEAMKLLTPLLQACPKSVH 659
                 59**************9875 PP

  == domain 13  score: 4.7 bits;  conditional E-value: 0.071
      TPR_14   9 eallalGdpdeAiallrralalaPddaeaw 38 
                 ea+ ++ ++ +A+++l++al+ + ++a + 
  CCE28363.1 666 EAFVRRNKLVAALRCLNAALSIDSENAKTK 695
                 7889999999***********988777655 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00057      0.54      10      66 ..      22      75 ..      16      77 .. 0.92
   2 !   13.3   0.0    0.0001     0.099      11      43 ..      91     120 ..      84     129 .. 0.84
   3 !    9.0   0.0    0.0024       2.2      10      63 ..     158     216 ..     149     220 .. 0.86
   4 !   17.6   6.7     5e-06    0.0047       3      62 ..     227     284 ..     226     288 .. 0.82
   5 ?   -0.8   0.1       2.7   2.5e+03      18      37 ..     277     293 ..     273     295 .. 0.79
   6 !    7.4   0.1    0.0074         7      28      66 ..     358     398 ..     341     399 .. 0.78
   7 !   13.1   0.0   0.00012      0.11      11      61 ..     380     427 ..     379     432 .. 0.92
   8 ?    3.4   0.0      0.13   1.2e+02       4      24 ..     486     506 ..     485     510 .. 0.88
   9 ?    1.6   0.3      0.49   4.7e+02       6      27 ..     667     688 ..     663     701 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00057
      TPR_16 10 agdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66
                 ++y + +++++  lk++   P + + +  +++++  qg  +eA al ++alra+++
  CCE28363.1 22 EKQYKRGLKMADLILKKN---PKHGDTMAMKALIFNSQGKTDEAFALGKEALRADMK 75
                57889999999999****...********************************9976 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.0001
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgda 43 
                 +++++A++a++ alk+    P+ a+ +  l+ +
  CCE28363.1  91 KNFEEAIKAYKFALKLE---PESAQIQRDLATL 120
                 79***************...******9999866 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0024
      TPR_16  10 agdyddAaaaleaalkrdpssPd.....aaeAllllgdaalrqgrlaeAaalyraalra 63 
                 +g++ +A+ +l+++    +s+P      + eA ++++++ ++qg++++A+  ++ a ++
  CCE28363.1 158 SGNPSEAESVLTTYESTMKSTPSrhdteNSEAVMYKNVLIAAQGDYERALTHLNTACKH 216
                 588888888888888888888888888899********************999988765 PP

  == domain 4  score: 17.6 bits;  conditional E-value: 5e-06
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraalr 62 
                 +a ++l++g+ d+Aa+a++a+l+r+    d+ e +  l++a+       eA+ a y+++++
  CCE28363.1 227 RAGYLLKLGRHDEAAKAYRALLDRN---ADHTEYYEQLAVALQISEQDIEARkAMYDEYAK 284
                 699**********************...***********9986666666666666666655 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 2.7
      TPR_16  18 aaleaalkrdpssPdaaeAl 37 
                 a+++++ k++   P++ +A+
  CCE28363.1 277 AMYDEYAKKF---PRCDAAR 293
                 4569999***...9999987 PP

  == domain 6  score: 7.4 bits;  conditional E-value: 0.0074
      TPR_16  28 pssPdaaeAllllgdaal.rq.grlaeAaalyraalraapd 66 
                 +++   a+Al++l++ +  ++  +la+A +++++a++ +++
  CCE28363.1 358 SKDKGEAAALYFLAQHYNyHLsRDLAKAMEYIDKAIDKDSN 398
                 445569***********9877899***********998875 PP

  == domain 7  score: 13.1 bits;  conditional E-value: 0.00012
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 +d ++A ++ + a+++d   +  +++++ +++++ +qg+  +Aaa  + a 
  CCE28363.1 380 RDLAKAMEYIDKAIDKD---SNSVDFHMTKARILKHQGDIGAAAAMMDTAR 427
                 7999*************...************************9877775 PP

  == domain 8  score: 3.4 bits;  conditional E-value: 0.13
      TPR_16   4 araalragdyddAaaaleaal 24 
                 + a++r+g+   A+++++a++
  CCE28363.1 486 GEAYARQGNIGLALKRFHAVI 506
                 67999***********99986 PP

  == domain 9  score: 1.6 bits;  conditional E-value: 0.49
      TPR_16   6 aalragdyddAaaaleaalkrd 27 
                 a++r+++  +A++ l+aal  d
  CCE28363.1 667 AFVRRNKLVAALRCLNAALSID 688
                 78999*************9877 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.41   3.8e+02       3      21 ..      52      70 ..      50      74 .. 0.78
   2 !   25.8   0.0   6.4e-09     6e-06       1      36 [.      84     119 ..      84     124 .. 0.91
   3 !   10.7   0.0   0.00035      0.33       6      22 ..     199     215 ..     197     219 .. 0.92
   4 !    9.3   1.4   0.00091      0.86       5      38 ..     232     265 ..     231     266 .. 0.93
   5 ?    0.5   0.0      0.53     5e+02      18      31 ..     390     403 ..     380     414 .. 0.81
   6 ?    0.1   0.0      0.71   6.7e+02       1      19 [.     486     504 ..     486     508 .. 0.76
   7 !   11.4   0.0   0.00021       0.2       3      28 ..     667     692 ..     666     694 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.41
      TPR_11  3 ayyeqGkyeeAieaYkkAl 21
                ++ +qGk +eA +  k+Al
  CCE28363.1 52 IFNSQGKTDEAFALGKEAL 70
                899********77666665 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 6.4e-09
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGl 36 
                 G +y++  ++eeAi+aYk Alkl P++a +   L+ 
  CCE28363.1  84 GLLYRSCKNFEEAIKAYKFALKLEPESAQIQRDLAT 119
                 789***************************998875 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00035
      TPR_11   6 eqGkyeeAieaYkkAlk 22 
                 +qG+ye A++++++A+k
  CCE28363.1 199 AQGDYERALTHLNTACK 215
                 79**************8 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00091
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaeayynLGlay 38 
                  ++G+ +eA +aY++ l+ + d  e y  L++a+
  CCE28363.1 232 LKLGRHDEAAKAYRALLDRNADHTEYYEQLAVAL 265
                 589****************************997 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.53
      TPR_11  18 kkAlkldPdnaeay 31 
                  kA++ d+++++++
  CCE28363.1 390 DKAIDKDSNSVDFH 403
                 69**********99 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.71
      TPR_11   1 GdayyeqGkyeeAieaYkk 19 
                 G ay  qG++  A++++ +
  CCE28363.1 486 GEAYARQGNIGLALKRFHA 504
                 7889999999988887655 PP

  == domain 7  score: 11.4 bits;  conditional E-value: 0.00021
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdna 28 
                 a++ ++k+ +A+ ++++Al +d++na
  CCE28363.1 667 AFVRRNKLVAALRCLNAALSIDSENA 692
                 7899*********************9 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.25   2.3e+02       7      20 ..      49      62 ..      44      71 .. 0.87
   2 !   24.1   0.2   2.4e-08   2.2e-05       8      33 ..      84     109 ..      84     110 .. 0.96
   3 ?    1.0   0.0      0.45   4.3e+02       4      21 ..     148     165 ..     148     166 .. 0.92
   4 !    7.0   0.0    0.0057       5.3      13      31 ..     199     217 ..     198     219 .. 0.91
   5 !    8.6   0.2    0.0017       1.6      11      31 ..     231     251 ..     225     254 .. 0.83
   6 ?    5.9   0.2     0.012        12      11      33 ..     376     398 ..     374     399 .. 0.88
   7 ?    0.9   0.0       0.5   4.7e+02       8      22 ..     486     500 ..     480     508 .. 0.84
   8 ?    5.4   0.0     0.019        18      13      34 .]     670     691 ..     666     691 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.25
                HHHHHHHTT-HHHH CS
       TPR_1  7 lGnayfklgkydeA 20
                +++++ ++gk deA
  CCE28363.1 49 KALIFNSQGKTDEA 62
                799**********9 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 2.4e-08
                 HHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPn 33 
                 G++y++ ++++eA+++y+ AL+l+P+
  CCE28363.1  84 GLLYRSCKNFEEAIKAYKFALKLEPE 109
                 89***********************7 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.45
                 HHHHHHHHHHTT-HHHHH CS
       TPR_1   4 lynlGnayfklgkydeAl 21 
                 +  l+ a++  g++ eA+
  CCE28363.1 148 WTALAIAHHLSGNPSEAE 165
                 7889************96 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0057
                 HTT-HHHHHHHHHHHHHHS CS
       TPR_1  13 klgkydeAleyyekALeln 31 
                  +g+y+ Al + + A ++n
  CCE28363.1 199 AQGDYERALTHLNTACKHN 217
                 69*************9987 PP

  == domain 5  score: 8.6 bits;  conditional E-value: 0.0017
                 HHHTT-HHHHHHHHHHHHHHS CS
       TPR_1  11 yfklgkydeAleyyekALeln 31 
                 ++klg++deA ++y+  L  n
  CCE28363.1 231 LLKLGRHDEAAKAYRALLDRN 251
                 78************9777666 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.012
                 HHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  11 yfklgkydeAleyyekALelnPn 33 
                 y+   ++ +A ey +kA+  + n
  CCE28363.1 376 YHLSRDLAKAMEYIDKAIDKDSN 398
                 7778899***********99877 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.5
                 HHHHHHTT-HHHHHH CS
       TPR_1   8 GnayfklgkydeAle 22 
                 G ay ++g+   Al+
  CCE28363.1 486 GEAYARQGNIGLALK 500
                 889999999999986 PP

  == domain 8  score: 5.4 bits;  conditional E-value: 0.019
                 HTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  13 klgkydeAleyyekALelnPnn 34 
                 + +k+  Al + + AL+++ +n
  CCE28363.1 670 RRNKLVAALRCLNAALSIDSEN 691
                 6789999************876 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2       6.1   5.7e+03      12      34 .]      20      42 ..      19      42 .. 0.82
   2 ?    1.1   0.0      0.58   5.5e+02      14      31 ..      56      73 ..      49      76 .. 0.90
   3 !   19.1   0.1     1e-06   0.00098       3      33 ..      79     109 ..      77     110 .. 0.94
   4 ?    3.3   0.0      0.12   1.1e+02       4      22 ..     148     166 ..     146     170 .. 0.88
   5 !    9.3   0.0    0.0013       1.3      13      31 ..     199     217 ..     197     219 .. 0.92
   6 !   12.8   1.0    0.0001     0.098       7      32 ..     227     252 ..     222     254 .. 0.84
   7 ?   -0.8   0.1       2.4   2.3e+03       2      23 ..     256     277 ..     255     278 .. 0.87
   8 !    6.7   0.2    0.0093       8.8      10      33 ..     375     398 ..     364     399 .. 0.89
   9 ?    4.3   0.0     0.057        54       2      31 ..     401     430 ..     400     433 .. 0.90
  10 ?    4.2   0.0     0.061        58       8      29 ..     486     507 ..     486     510 .. 0.88
  11 ?   -1.6   0.7       4.2   3.9e+03      10      26 ..     582     598 ..     581     601 .. 0.86
  12 ?    4.4   0.0     0.052        49      13      34 .]     670     691 ..     666     691 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 6.1
       TPR_2 12 yklgdyeeAleafekAleldPnn 34
                y+ ++y++ l+  +  l+ +P++
  CCE28363.1 20 YEEKQYKRGLKMADLILKKNPKH 42
                67788999999889999999986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.58
       TPR_2 14 lgdyeeAleafekAleld 31
                +g+ +eA ++ ++Al+ d
  CCE28363.1 56 QGKTDEAFALGKEALRAD 73
                89*************977 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 1e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 +++  Gl+y+  +++eeA++a++ Al+l+P+
  CCE28363.1  79 CWHVYGLLYRSCKNFEEAIKAYKFALKLEPE 109
                 7999*************************97 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.12
       TPR_2   4 lynlGlayyklgdyeeAle 22 
                 + +l+ a+  +g++ eA+ 
  CCE28363.1 148 WTALAIAHHLSGNPSEAES 166
                 889**************86 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.0013
       TPR_2  13 klgdyeeAleafekAleld 31 
                 ++gdye+Al +++ A +++
  CCE28363.1 199 AQGDYERALTHLNTACKHN 217
                 79*************9986 PP

  == domain 6  score: 12.8 bits;  conditional E-value: 0.0001
       TPR_2   7 lGlayyklgdyeeAleafekAleldP 32 
                 ++  ++klg+++eA++a+++ l  + 
  CCE28363.1 227 RAGYLLKLGRHDEAAKAYRALLDRNA 252
                 67789****************99875 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 2.4
       TPR_2   2 ealynlGlayyklgdyeeAlea 23 
                 e++ +l+ a+  + +  eA++a
  CCE28363.1 256 EYYEQLAVALQISEQDIEARKA 277
                 6899999999999999999987 PP

  == domain 8  score: 6.7 bits;  conditional E-value: 0.0093
       TPR_2  10 ayyklgdyeeAleafekAleldPn 33 
                  y  + d+++A e+ +kA+  d n
  CCE28363.1 375 NYHLSRDLAKAMEYIDKAIDKDSN 398
                 588899*************99876 PP

  == domain 9  score: 4.3 bits;  conditional E-value: 0.057
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleld 31 
                 + ++  ++++ ++gd   A++ ++ A +ld
  CCE28363.1 401 DFHMTKARILKHQGDIGAAAAMMDTARRLD 430
                 578999******************999998 PP

  == domain 10  score: 4.2 bits;  conditional E-value: 0.061
       TPR_2   8 GlayyklgdyeeAleafekAle 29 
                 G+ay+++g+   Al+ f +++ 
  CCE28363.1 486 GEAYARQGNIGLALKRFHAVIT 507
                 89*************9998876 PP

  == domain 11  score: -1.6 bits;  conditional E-value: 4.2
       TPR_2  10 ayyklgdyeeAleafek 26 
                 a++++++ ++A++ +++
  CCE28363.1 582 ALAAKKNAKKAKKELQR 598
                 78899999****99987 PP

  == domain 12  score: 4.4 bits;  conditional E-value: 0.052
       TPR_2  13 klgdyeeAleafekAleldPnn 34 
                 +++++  Al+++++Al++d +n
  CCE28363.1 670 RRNKLVAALRCLNAALSIDSEN 691
                 6788899***********9876 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.081        76       2      47 ..      20      65 ..      19      77 .. 0.83
   2 !   19.5   0.2   1.1e-06     0.001       6      42 ..      92     128 ..      90     129 .. 0.96
   3 ?    4.5   0.0     0.053        50      28      51 ..     148     171 ..     134     180 .. 0.80
   4 !   17.8   4.9   3.7e-06    0.0035       3      64 ..     199     261 ..     198     278 .. 0.89
   5 ?   -1.6   0.1       4.4   4.1e+03      10      33 ..     345     372 ..     328     374 .. 0.63
   6 !   21.0   0.6   3.7e-07   0.00035       5      67 ..     380     442 ..     377     443 .. 0.94
   7 ?    2.7   2.3      0.19   1.8e+02      33      57 ..     581     605 ..     581     610 .. 0.86
   8 ?    5.6   0.4     0.023        22       8      57 ..     641     690 ..     640     705 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.081
      TPR_19  2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAeal 47
                ++e++y + l++   +l+++pk+++  +  A +  ++g +deA al
  CCE28363.1 20 YEEKQYKRGLKMADLILKKNPKHGDTMAMKALIFNSQGKTDEAFAL 65
                5789999999999999999******999999999999999999665 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.1e-06
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqld 42 
                 +++eA+++++ al+ +p++a ++ +LA +++++ ++d
  CCE28363.1  92 NFEEAIKAYKFALKLEPESAQIQRDLATLQIQMRDYD 128
                 799*******************************998 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.053
      TPR_19  28 rllLAeallalgqldeAealLdal 51 
                 + +LA+a+  +g++ eAe +L ++
  CCE28363.1 148 WTALAIAHHLSGNPSEAESVLTTY 171
                 5579****************9876 PP

  == domain 4  score: 17.8 bits;  conditional E-value: 3.7e-06
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.aryasL 64 
                 a+gdy++Al +l  a +++ + ++++   A  ll+lg+ deA ++  al++ ++d+ ++y +L
  CCE28363.1 199 AQGDYERALTHLNTACKHNVDRLAVLESRAGYLLKLGRHDEAAKAYRALLDRNADHtEYYEQL 261
                 8**************77777777777777**************************96777655 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 4.4
      TPR_19  10 Alalleqalqe....dpknaearllLAe 33 
                 A+++le+  +e    d + a+a++ LA+
  CCE28363.1 345 AQKYLESQSTEteskDKGEAAALYFLAQ 372
                 5566666443333336666777777776 PP

  == domain 6  score: 21.0 bits;  conditional E-value: 3.7e-07
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAk 67 
                  d+a A+++  +a+++d ++ +  +  A++l  +g++ +A a++d++ + d +d ++ s  Ak
  CCE28363.1 380 RDLAKAMEYIDKAIDKDSNSVDFHMTKARILKHQGDIGAAAAMMDTARRLDLKDRYINSKAAK 442
                 69***************************************************8888887776 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.19
      TPR_19  33 eallalgqldeAealLdalpeedpd 57 
                 +al a ++ ++A++ L+++ +e++ 
  CCE28363.1 581 DALAAKKNAKKAKKELQRIEREEAE 605
                 688999*************999876 PP

  == domain 8  score: 5.6 bits;  conditional E-value: 0.023
      TPR_19   8 aeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 +eA++ll+ +lq+ pk+  ++ +  ea +  + l +A ++L+a++  d  
  CCE28363.1 641 EEAMKLLTPLLQACPKSVHVQHAGFEAFVRRNKLVAALRCLNAALSIDSE 690
                 79********************99******************99877655 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0017       1.6       6      32 ..      36      62 ..      34      64 .. 0.95
   2 ?    6.5   0.0     0.013        13       3      34 .]      67      98 ..      65      98 .. 0.93
   3 ?    0.9   0.0      0.78   7.4e+02       5      29 ..     103     127 ..      99     135 .. 0.85
   4 ?   -0.7   0.0       2.6   2.4e+03      16      33 ..     148     165 ..     146     166 .. 0.89
   5 ?    1.2   0.0      0.63   5.9e+02       8      33 ..     182     207 ..     181     208 .. 0.86
   6 !    7.3   0.3    0.0072       6.8       2      34 .]     244     276 ..     243     276 .. 0.94
   7 !   14.4   0.0     4e-05     0.038       3      32 ..     390     419 ..     388     421 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0017
      TPR_17  6 leldPnnadaynnLAelllknGdlmtA 32
                l+++P++ d + ++A ++ ++G++++A
  CCE28363.1 36 LKKNPKHGDTMAMKALIFNSQGKTDEA 62
                899**********************99 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.013
      TPR_17  3 lkaleldPnnadaynnLAelllknGdlmtArq 34
                ++al+ d ++   ++ ++ l+++ +++++A++
  CCE28363.1 67 KEALRADMKSHICWHVYGLLYRSCKNFEEAIK 98
                68999************************985 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.78
      TPR_17   5 aleldPnnadaynnLAelllknGdl 29 
                 al+l+P +a     LA+l+ +  d+
  CCE28363.1 103 ALKLEPESAQIQRDLATLQIQMRDY 127
                 89***************98776666 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.6
      TPR_17  16 ynnLAelllknGdlmtAr 33 
                 ++ LA +++  G++ +A+
  CCE28363.1 148 WTALAIAHHLSGNPSEAE 165
                 999**********99997 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.63
      TPR_17   8 ldPnnadaynnLAelllknGdlmtAr 33 
                 +d  n++a  ++ +l + +Gd+++A+
  CCE28363.1 182 HDTENSEAVMYKNVLIAAQGDYERAL 207
                 67789999999999999*******96 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0072
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 y+  l+++ ++ + y +LA++l    +  +Ar+
  CCE28363.1 244 YRALLDRNADHTEYYEQLAVALQISEQDIEARK 276
                 999************************999985 PP

  == domain 7  score: 14.4 bits;  conditional E-value: 4e-05
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtA 32 
                  ka+++d n++d++  +A++l+++Gd + A
  CCE28363.1 390 DKAIDKDSNSVDFHMTKARILKHQGDIGAA 419
                 79***********************98776 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.6   2.3e-07   0.00021       2      80 ..      22     101 ..      21     103 .. 0.94
   2 !   20.7   1.0   3.8e-07   0.00036      18      80 ..     182     245 ..     149     247 .. 0.89
   3 !    9.0   1.5    0.0018       1.7      18      73 ..     359     417 ..     330     426 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.3e-07
                 TT-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3   2 qnnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                  ++yk  + +a+++l++++++ +   ++Al + ++g+ ++A+ l ++a + + ks+ c+ +++  +   k++eeAi+a++
  CCE28363.1  22 EKQYKRGLKMADLILKKNPKHGDTMAMKALIFNSQGKTDEAFALGKEAlRADMKSHICWHVYGLLYRSCKNFEEAIKAYK 101
                 6899***********8889888889999************************************************9976 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 3.8e-07
                 HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  18 aetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                  +te++e+++++      +g+y+rA++ l++a k n   l+++   A  llkL++++eA +a+ 
  CCE28363.1 182 HDTENSEAVMYKNVLIAAQGDYERALTHLNTAcKHNVDRLAVLESRAGYLLKLGRHDEAAKAYR 245
                 67999999***************************************************99976 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0018
                 HHH--HHHHHHHHHHH..HHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HH CS
      ANAPC3  18 aetespedayllAlcl..ylngqykrAyellrka.klnskslgcrylfAqcllkLkkye 73 
                 +++  + ++y+lA+ +   l+ +  +A+e+++ka +++s+s   ++++A+ l  ++ + 
  CCE28363.1 359 KDKGEAAALYFLAQHYnyHLSRDLAKAMEYIDKAiDKDSNSVDFHMTKARILKHQGDIG 417
                 34455556999988653278899***************************987666655 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.13   1.2e+02       7      48 ..      21      62 ..      18      64 .. 0.82
   2 !   13.7   0.1   5.4e-05     0.051       5      47 ..      87     129 ..      85     157 .. 0.89
   3 ?   -0.3   0.0       1.3   1.2e+03      31      64 ..     147     183 ..     135     190 .. 0.78
   4 ?   -0.2   0.6       1.2   1.1e+03      40      61 ..     198     219 ..     195     249 .. 0.72
   5 ?   -1.1   0.5       2.2   2.1e+03       8      41 ..     234     267 ..     227     294 .. 0.66
   6 !    9.8   0.0   0.00092      0.86       8      55 ..     379     426 ..     373     446 .. 0.89
   7 ?   -2.9   0.0       8.4     8e+03       6      18 ..     445     457 ..     439     459 .. 0.85
   8 ?   -1.7   0.0       3.5   3.3e+03      35      54 ..     485     504 ..     482     508 .. 0.82
   9 ?    5.1   0.1     0.027        25       6      41 ..     669     704 ..     665     709 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.13
       TPR_9  7 reedweralavverllllaPddpeerrdRGlllaqlGclsaA 48
                +e+++ r l++++++l  +P++ +     +l+   +G + +A
  CCE28363.1 21 EEKQYKRGLKMADLILKKNPKHGDTMAMKALIFNSQGKTDEA 62
                6899****************9988877777777777766665 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 5.4e-05
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsa 47 
                 + + +++e+a++++   l l P++++  rd + l+ q+ ++ +
  CCE28363.1  87 YRSCKNFEEAIKAYKFALKLEPESAQIQRDLATLQIQMRDYDG 129
                 5666899********************************9975 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.3
       TPR_9  31 errdRGlllaqlGclsaAladLeayl...alapdapd 64 
                  +   +++++ +G++s+A   L +y      +p+++d
  CCE28363.1 147 NWTALAIAHHLSGNPSEAESVLTTYEstmKSTPSRHD 183
                 6888999999********9999999655566666666 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.2
       TPR_9  40 aqlGclsaAladLeaylalapd 61 
                 a +G+++ Al  L+++  ++ d
  CCE28363.1 198 AAQGDYERALTHLNTACKHNVD 219
                 5678888888888887766544 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 2.2
       TPR_9   8 eedweralavverllllaPddpeerrdRGlllaq 41 
                   ++++a +++  ll  + d+ e +   +++l+ 
  CCE28363.1 234 LGRHDEAAKAYRALLDRNADHTEYYEQLAVALQI 267
                 4566667777777766666666666666666554 PP

  == domain 6  score: 9.8 bits;  conditional E-value: 0.00092
       TPR_9   8 eedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeay 55 
                 ++d ++a+++++  +  ++++++ ++  +++l ++G++ aA+a ++++
  CCE28363.1 379 SRDLAKAMEYIDKAIDKDSNSVDFHMTKARILKHQGDIGAAAAMMDTA 426
                 789***************************************999886 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 8.4
       TPR_9   6 ireedweralavv 18 
                 +r++++e+al++v
  CCE28363.1 445 LRNNENEKALKTV 457
                 79999*****987 PP

  == domain 8  score: -1.7 bits;  conditional E-value: 3.5
       TPR_9  35 RGlllaqlGclsaAladLea 54 
                  G ++a++G++  Al+ + a
  CCE28363.1 485 DGEAYARQGNIGLALKRFHA 504
                 5899******9999987765 PP

  == domain 9  score: 5.1 bits;  conditional E-value: 0.027
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaq 41 
                  r+++  +al++++  l ++++ +     R+ l a+
  CCE28363.1 669 VRRNKLVAALRCLNAALSIDSENAKTKDQRAALIAR 704
                 678888888888888888888888777777776665 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.089        84       4      30 ..      46      72 ..      43      73 .. 0.83
   2 !   19.9   0.1   6.1e-07   0.00058       4      33 ..      80     109 ..      78     110 .. 0.95
   3 ?   -1.3   0.0       3.9   3.7e+03       4      24 ..     148     168 ..     146     171 .. 0.86
   4 ?    0.3   0.0       1.1   1.1e+03      14      28 ..     200     214 ..     198     215 .. 0.85
   5 !   11.1   0.1    0.0004      0.38      11      34 .]     231     254 ..     224     254 .. 0.90
   6 ?   -0.0   0.9       1.5   1.4e+03       2      27 ..     256     282 ..     255     284 .. 0.84
   7 ?    4.5   0.5      0.05        47      11      29 ..     376     394 ..     364     398 .. 0.82
   8 ?    2.6   0.0      0.21   1.9e+02       4      27 ..     403     426 ..     400     433 .. 0.82
   9 ?   -0.1   0.0       1.6   1.5e+03       2      19 ..     487     504 ..     486     510 .. 0.79
  10 ?   -2.0   0.5       6.4   6.1e+03      11      25 ..     583     597 ..     581     599 .. 0.75
  11 ?   -0.2   0.0       1.7   1.6e+03      19      34 .]     676     691 ..     672     691 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.089
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8  4 yynlgsiylklgdyeeAkeyyekalel 30
                + ++++i  ++g+ +eA +  ++al++
  CCE28363.1 46 MAMKALIFNSQGKTDEAFALGKEALRA 72
                689**************9877777765 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 6.1e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++  g++y++ +++eeA+++y+ al+l+p+
  CCE28363.1  80 WHVYGLLYRSCKNFEEAIKAYKFALKLEPE 109
                 999*************************97 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.9
                 HHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyy 24 
                 +  l+ +++  g+  eA++++
  CCE28363.1 148 WTALAIAHHLSGNPSEAESVL 168
                 8899999**********9876 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1.1
                 TT-HHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekal 28 
                 +gdye A   ++ a+
  CCE28363.1 200 QGDYERALTHLNTAC 214
                 79*****99999887 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.0004
                 HHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  11 ylklgdyeeAkeyyekaleldpdn 34 
                 +lklg+++eA ++y+  l+ + d+
  CCE28363.1 231 LLKLGRHDEAAKAYRALLDRNADH 254
                 689***************999876 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 1.5
                 CHHHHHHHHH.HHTT-HHHHHHHHHHH CS
       TPR_8   2 eayynlgsiy.lklgdyeeAkeyyeka 27 
                 e+y +l+ ++ ++ +d+e+ k+ y ++
  CCE28363.1 256 EYYEQLAVALqISEQDIEARKAMYDEY 282
                 689999988889999999999999876 PP

  == domain 7  score: 4.5 bits;  conditional E-value: 0.05
                 HHHTT-HHHHHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyekale 29 
                 y+   d+ +A+ey+ ka++
  CCE28363.1 376 YHLSRDLAKAMEYIDKAID 394
                 677889***********96 PP

  == domain 8  score: 2.6 bits;  conditional E-value: 0.21
                 HHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyeka 27 
                 ++ +++i++ +gd+ +A + +  a
  CCE28363.1 403 HMTKARILKHQGDIGAAAAMMDTA 426
                 6789*************9988776 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 1.6
                 CHHHHHHHHHHHTT-HHH CS
       TPR_8   2 eayynlgsiylklgdyee 19 
                 eay + g+i l l+++++
  CCE28363.1 487 EAYARQGNIGLALKRFHA 504
                 789999999999999886 PP

  == domain 10  score: -2.0 bits;  conditional E-value: 6.4
                 HHHTT-HHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyye 25 
                 +  +++ ++Ak+ ++
  CCE28363.1 583 LAAKKNAKKAKKELQ 597
                 667889999998776 PP

  == domain 11  score: -0.2 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHH. CS
       TPR_8  19 eAkeyyekaleldpdn 34 
                 +A  +++ al++d +n
  CCE28363.1 676 AALRCLNAALSIDSEN 691
                 57889*******9875 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0012       1.1      39      74 ..      37      72 ..      22      75 .. 0.80
   2 !    9.0   0.1    0.0018       1.7       9      62 ..      83     128 ..      78     129 .. 0.83
   3 ?    3.8   0.0     0.076        72      49      69 ..     149     169 ..     139     176 .. 0.86
   4 !   13.1   3.5   9.2e-05     0.087      14      73 ..     198     249 ..     192     253 .. 0.86
   5 !    8.2   3.0    0.0031       2.9       3      58 ..     221     268 ..     219     278 .. 0.71
   6 ?    1.5   0.9       0.4   3.8e+02      35      72 ..     355     393 ..     343     398 .. 0.71
   7 ?   -0.4   2.2       1.6   1.5e+03       8      61 ..     369     416 ..     363     432 .. 0.44
   8 ?    3.3   0.0      0.11     1e+02      10      34 ..     486     510 ..     478     516 .. 0.86
   9 ?   -0.4   0.1       1.5   1.4e+03      19      35 ..     674     690 ..     666     704 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
      TPR_12 39 pdhpltattlrnLgrlyralgryeeAlelleealai 74
                +++p    t+   + ++  +g+++eA +l +eal++
  CCE28363.1 37 KKNPKHGDTMAMKALIFNSQGKTDEAFALGKEALRA 72
                56788899999999********************97 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0018
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgrye 62 
                 +++++r  ++++eA++ ++ al +      p++   a+++r+L++l+ ++ +y+
  CCE28363.1  83 YGLLYRSCKNFEEAIKAYKFALKLE-----PES---AQIQRDLATLQIQMRDYD 128
                 78999999*************9998.....765...888888888888887876 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.076
      TPR_12  49 rnLgrlyralgryeeAlelle 69 
                  +L+++++++g++ eA++ l+
  CCE28363.1 149 TALAIAHHLSGNPSEAESVLT 169
                 5799************98875 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 9.2e-05
      TPR_12  14 rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 +++g+y+ Al++l++a   +     +++ + +++l   + ++++lgr++eA ++++  l+
  CCE28363.1 198 AAQGDYERALTHLNTA---C-----KHNVDRLAVLESRAGYLLKLGRHDEAAKAYRALLD 249
                 6799999999999999...7.....677889999*********************98776 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0031
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyral 58 
                 +++l  +a  l++lgr+deA + +++ l++       dh    +++  L+ +++ +
  CCE28363.1 221 LAVLESRAGYLLKLGRHDEAAKAYRALLDRN-----ADHT---EYYEQLAVALQIS 268
                 566767999999*************999998.....5552...3555555555555 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.4
      TPR_12  35 rllGpdhpltattlrnLgrly.r.algryeeAlelleeal 72 
                 ++  +d+ ++a++l+ L++ y + ++ ++++A e+  +a+
  CCE28363.1 355 ETESKDK-GEAAALYFLAQHYnYhLSRDLAKAMEYIDKAI 393
                 4444555.89999999999976536688888888887776 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 1.6
      TPR_12   8 nlaavl.rrlgr.ydeAlellekaleiarrllGpdhpltattlrnLgrlyralgry 61 
                  la+ + ++l r +++A e+ +ka++         + + +    + +r++  +g+ 
  CCE28363.1 369 FLAQHYnYHLSRdLAKAMEYIDKAIDKD-------S-NSVDFHMTKARILKHQGDI 416
                 5555554443333555555555554444.......3.3333333334444444444 PP

  == domain 8  score: 3.3 bits;  conditional E-value: 0.11
      TPR_12  10 aavlrrlgrydeAlellekaleiar 34 
                 +++++r+g+   Al+ +++++ i+ 
  CCE28363.1 486 GEAYARQGNIGLALKRFHAVITIFD 510
                 78999************99998875 PP

  == domain 9  score: -0.4 bits;  conditional E-value: 1.5
      TPR_12  19 ydeAlellekaleiarr 35 
                 +  Al++l++al i ++
  CCE28363.1 674 LVAALRCLNAALSIDSE 690
                 45677777777777744 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0049       4.6       6      24 ..     150     168 ..     148     168 .. 0.91
   2 ?    6.8   0.0     0.014        13      12      24 ..     198     210 ..     195     212 .. 0.90
   3 ?    4.6   0.7     0.069        65       6      21 ..     226     241 ..     221     246 .. 0.79
   4 ?   -1.6   0.3       7.1   6.7e+03       1      11 [.     364     374 ..     364     375 .. 0.84
   5 ?    6.8   0.0     0.014        13       6      25 ..     405     424 ..     401     425 .. 0.87
   6 ?    1.5   0.0      0.67   6.3e+02       8      20 ..     486     498 ..     480     502 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0049
       TPR_4   6 aLArallalGdldeArall 24 
                 aLA a+++ G++ eA+ +l
  CCE28363.1 150 ALAIAHHLSGNPSEAESVL 168
                 8**************9876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.014
       TPR_4  12 lalGdldeArall 24 
                 +a+Gd+++A+++l
  CCE28363.1 198 AAQGDYERALTHL 210
                 89*********98 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.069
       TPR_4   6 aLArallalGdldeAr 21 
                  +A  ll lG++deA+
  CCE28363.1 226 SRAGYLLKLGRHDEAA 241
                 5777899********8 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 7.1
       TPR_4   1 arallaLAral 11 
                 a+al++LA+ +
  CCE28363.1 364 AAALYFLAQHY 374
                 6899****976 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.014
       TPR_4   6 aLArallalGdldeAralle 25 
                   Ar l ++Gd  +A+a+++
  CCE28363.1 405 TKARILKHQGDIGAAAAMMD 424
                 56999************986 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.67
       TPR_4   8 ArallalGdldeA 20 
                 ++a++++G+   A
  CCE28363.1 486 GEAYARQGNIGLA 498
                 79******98877 PP

>> Inj_translocase  DNA/protein translocase of phage P22 injectosome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.6      0.34   3.2e+02      68     141 ..     352     429 ..     323     459 .. 0.65
   2 !   17.3   0.6   2.6e-06    0.0024      25     164 ..     482     617 ..     464     623 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.34
  Inj_translocase  68 dqkyaeayatgDvsglrklaqeyPe.fvekiqkalsglneqkredlGkl...amklkvalaqGpeavskfvtknadrl 141
                      + + +e+  +g+  +l  laq+y   + +   ka+ ++++   +d  ++     k+++   qG      ++++ a rl
       CCE28363.1 352 QSTETESKDKGEAAALYFLAQHYNYhLSRDLAKAMEYIDKAIDKDSNSVdfhMTKARILKHQGDIGAAAAMMDTARRL 429
                      223345566788899999999987515567999999999865554444311144566667778777777777777665 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.6e-06
  Inj_translocase  25 lirdnnelarsGannlgLqaLsglkgiadiyqqdqqqqkqkafdqkyaeayatgDvsglrklaqeyPefvekiqkalsglneqkredlGklamk 118
                      l  d   +ar+G   l+L+ ++++  i d++q+dq     + f+ + ++ +a  D+    + + ++P + +++ +a+    e   ++l + a +
       CCE28363.1 482 LTEDGEAYARQGNIGLALKRFHAVITIFDVWQEDQF--DFHTFSLRKGQTRAYVDMIKWEDHVRDHPFYSRAALNAIKLYMEMSDRKLANGANG 573
                      556677899***********************9986..578999************************************************** PP

  Inj_translocase 119 lkvalaqGpeavskfvtknadrlkrvGvdPedllqtlkqdPeqlse 164
                      ++ + +    a +k   k + +l+r+  + e++ ++ kqdP++  +
       CCE28363.1 574 INASNGDDALAAKKNAKKAKKELQRI--EREEAEKQAKQDPNKPKQ 617
                      **999999999**************6..677888899999987555 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.69   6.5e+02     234     276 ..      29      71 ..      23      74 .. 0.71
   2 !   16.8   0.9   3.3e-06    0.0031     144     245 ..      75     176 ..      54     182 .. 0.79
   3 !    9.9   4.3   0.00042       0.4      10     100 ..     188     277 ..     178     285 .. 0.76
   4 ?    3.4  13.8     0.039        37      22     185 ..     238     405 ..     234     473 .. 0.70
   5 ?   -3.4   0.1       4.6   4.3e+03     158     181 ..     670     693 ..     662     699 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.69
      TPR_15 234 LeylrkqakenrkdplwllaYADaleqagradeAwrlRrqvwr 276
                 L+     +k+n+k    ++  A + + +g++deA++l ++++r
  CCE28363.1  29 LKMADLILKKNPKHGDTMAMKALIFNSQGKTDEAFALGKEALR 71 
                 5555666677777777777777788888999999988888876 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 3.3e-06
      TPR_15 144 qsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlli...DlgrraeLrellkawkaraesdasLwgplaaAlllLgrpkkALeylrk 239
                 +s   + +++ lyr   + ++A+++y+ Al+l+p+s++++  l  l i   D++ +++ r+++  ++ + ++ ++ w +la A  l g+p++A   l  
  CCE28363.1  75 KSHICWHVYGLLYRSCKNFEEAIKAYKFALKLEPESAQIQRDLATLQIqmrDYDGYTQSRKAM--LQ-ARSQIRQNWTALAIAHHLSGNPSEAESVLTT 170
                 89999***********************************99998888333555555577777..44.44778889***************99666665 PP

      TPR_15 240 qakenr 245
                 + + ++
  CCE28363.1 171 YESTMK 176
                 555555 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00042
      TPR_15  10 ealkl.atllykqgdvkkAlevLkeaaqkaapskdteyWrtladLAwalqqedearkAyrqLlasgkaraedyerliellydaepkeaarla 100
                 ea+ +   l+++qgd+++Al  L++a +++   +  ++++++a    +l + dea+kAyr Ll +++   e ye+l   l+ +e +  ar a
  CCE28363.1 188 EAVMYkNVLIAAQGDYERALTHLNTACKHN--VDRLAVLESRAGYLLKLGRHDEAAKAYRALLDRNADHTEYYEQLAVALQISEQDIEARKA 277
                 6665547788999**********7777777..577799****99999999**************9999999999998776655555444444 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.039
      TPR_15  22 gdvkkAlevLkeaaqkaapskdteyWrtladLAwalqqedearkAyrqLla..sgkaraedyerliel..lydaepkeaarlaekgwrrfrsprlLssa 116
                 ++ +kA+++L   ++++  ++ tey++   +LA alq  ++ ++A + ++    +k+ + d+ r i l  l+ + +keaa++ + +    + p  + + 
  CCE28363.1 238 DEAAKAYRAL---LDRN--ADHTEYYE---QLAVALQISEQDIEARKAMYDeyAKKFPRCDAARRIPLdfLSGDAFKEAADTYLTSMLNKGVPSTFANL 328
                 6789999999...5677..47888876...57777777777777777776411466677777777776668**************************** PP

      TPR_15 117 lellerakdydriaellksleeeea......aeqsaafllaraelyrqe..gqtdaAlrdyreAlalapdsselraa 185
                  +l+ +a + +++a+l ++  e +        +++aa l+ +a+ y      + ++A++ + +A++++ +s ++  +
  CCE28363.1 329 KHLYSDASKKEQLASLAQKYLESQSteteskDKGEAAALYFLAQHYNYHlsRDLAKAMEYIDKAIDKDSNSVDFHMT 405
                 *************99977744322212222255999999999998766511455799***********999987655 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 4.6
      TPR_15 158 qegqtdaAlrdyreAlalapdsse 181
                 ++++  aAlr++  Al+ + ++++
  CCE28363.1 670 RRNKLVAALRCLNAALSIDSENAK 693
                 567777888888888888777655 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       8.6   8.1e+03       7      18 ..      51      62 ..      49      72 .. 0.80
   2 ?    6.5   0.0      0.01       9.9       6      32 ..      84     108 ..      79     112 .. 0.81
   3 ?    3.5   0.0     0.089        84       3      23 ..     149     169 ..     148     174 .. 0.91
   4 ?    2.8   0.0      0.15   1.5e+02      11      21 ..     199     209 ..     190     213 .. 0.87
   5 ?    4.1   1.7      0.06        57      10      29 ..     232     249 ..     224     273 .. 0.82
   6 ?   -0.9   0.1       2.3   2.2e+03       2      24 ..     325     347 ..     324     358 .. 0.81
   7 ?    2.5   0.1       0.2   1.8e+02       1      33 [.     366     398 ..     366     401 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 8.6
       TPR_7  7 rlysrlGdyeeA 18
                 ++ ++G+++eA
  CCE28363.1 51 LIFNSQGKTDEA 62
                677899***999 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.01
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkdp 32 
                 + ly+++ ++eeAi+ y+   al  +p
  CCE28363.1  84 GLLYRSCKNFEEAIKAYKF--ALKLEP 108
                 679**************98..555554 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.089
       TPR_7   3 lnLarlysrlGdyeeAielye 23 
                  +La +++  G+ +eA+++++
  CCE28363.1 149 TALAIAHHLSGNPSEAESVLT 169
                 68***************9987 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.15
       TPR_7  11 rlGdyeeAiel 21 
                 ++Gdye+A+++
  CCE28363.1 199 AQGDYERALTH 209
                 59******997 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.06
       TPR_7  10 srlGdyeeAielyeqsLalt 29 
                  +lG+++eA++ y+++L  +
  CCE28363.1 232 LKLGRHDEAAKAYRALL--D 249
                 689***********944..3 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 2.3
       TPR_7   2 LlnLarlysrlGdyeeAielyeq 24 
                 + nL +lys+  + e++++l ++
  CCE28363.1 325 FANLKHLYSDASKKEQLASLAQK 347
                 6799999***9999999998766 PP

  == domain 7  score: 2.5 bits;  conditional E-value: 0.2
       TPR_7   1 aLlnLarlysr..lGdyeeAielyeqsLaltkdpe 33 
                 aL+ La+ y     +d ++A e+  +  a++kd +
  CCE28363.1 366 ALYFLAQHYNYhlSRDLAKAMEYIDK--AIDKDSN 398
                 567777776666699***********..9999866 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       1.3   1.3e+03      61     124 ..     110     176 ..      91     191 .. 0.67
   2 ?   14.5   4.0   3.9e-05     0.037      58     117 ..     217     276 ..     181     285 .. 0.86
   3 ?    1.0   0.0      0.56   5.3e+02     104     122 ..     487     505 ..     486     510 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHH...HHHHHHHHH CS
        BTAD  61 rlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeA...LevYerlrr 124
                   ++ ++la +++++ +++   +  +a++++     + + +l  A + sG+ +eA   L++Ye++++
  CCE28363.1 110 SAQIQRDLATLQIQMRDYDGYTQSRKAMLQARSQIRQNWTALAIAHHLSGNPSEAesvLTTYESTMK 176
                 5555566666666666666666666666666666667788888899999999998444455555555 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH CS
        BTAD  58 eelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALe 117
                 + +rl++le++a  +l+lGr++ea++ ++al++ +  + ++++ql  Al  s++  eA +
  CCE28363.1 217 NVDRLAVLESRAGYLLKLGRHDEAAKAYRALLDRNADHTEYYEQLAVALQISEQDIEARK 276
                 568***********************************************9999998854 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.56
                 HHHHHTT-HHHHHHHHHHH CS
        BTAD 104 rAlarsGrqaeALevYerl 122
                 +A+ar+G+ + AL++++ +
  CCE28363.1 487 EAYARQGNIGLALKRFHAV 505
                 69**************987 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0098       9.2      12      44 ..      20      52 ..      18      57 .. 0.86
   2 ?    6.3   0.1     0.011        10      15      38 ..      91     114 ..      87     129 .. 0.89
   3 ?   -0.3   0.0       1.3   1.2e+03      14      30 ..     200     216 ..     198     220 .. 0.87
   4 ?    1.8   0.1      0.28   2.6e+02      12      29 ..     232     249 ..     229     256 .. 0.88
   5 ?   -1.1   0.1       2.2   2.1e+03      15      30 ..     380     395 ..     366     398 .. 0.66
   6 ?    1.2   0.1      0.41   3.8e+02      19      38 ..     676     695 ..     668     706 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0098
                HHHT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH CS
  Fis1_TPR_C 12 yklgeYseArryvdalLeiEPenrQaqsLkeli 44
                y  ++Y++ ++ +d +L++ P+     + k+li
  CCE28363.1 20 YEEKQYKRGLKMADLILKKNPKHGDTMAMKALI 52
                56699****************988888888777 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.011
                 T-HHHHHHHHHHHHHHTTS-HHHH CS
  Fis1_TPR_C  15 geYseArryvdalLeiEPenrQaq 38 
                 ++++eA +  +  L++EPe  Q q
  CCE28363.1  91 KNFEEAIKAYKFALKLEPESAQIQ 114
                 89********************98 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.3
                 HT-HHHHHHHHHHHHHH CS
  Fis1_TPR_C  14 lgeYseArryvdalLei 30 
                 +g+Y++A+  +++ +++
  CCE28363.1 200 QGDYERALTHLNTACKH 216
                 69******999998887 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.28
                 HHHT-HHHHHHHHHHHHH CS
  Fis1_TPR_C  12 yklgeYseArryvdalLe 29 
                 +klg+++eA +  +alL 
  CCE28363.1 232 LKLGRHDEAAKAYRALLD 249
                 69**************97 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 2.2
                 T-HHHHHHHHHHHHHH CS
  Fis1_TPR_C  15 geYseArryvdalLei 30 
                 ++  +A++y+d  + +
  CCE28363.1 380 RDLAKAMEYIDKAIDK 395
                 4666777777766554 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.41
                 HHHHHHHHHHHHTTS-HHHH CS
  Fis1_TPR_C  19 eArryvdalLeiEPenrQaq 38 
                  A+r+++a L+i+ en   +
  CCE28363.1 676 AALRCLNAALSIDSENAKTK 695
                 69***********9997655 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       2.6   2.5e+03       8      32 ..      18      41 ..      10      42 .. 0.68
   2 ?   -1.7   0.0       6.5   6.2e+03       7      20 ..      50      63 ..      45      65 .. 0.77
   3 ?    4.5   0.0      0.07        66       7      33 .]      84     110 ..      82     110 .. 0.90
   4 ?   -1.2   0.0       4.4   4.2e+03       5      16 ..     138     148 ..     117     169 .. 0.73
   5 ?    1.1   0.0      0.82   7.8e+02      12      24 ..     199     211 ..     191     215 .. 0.80
   6 ?    9.6   0.1    0.0016       1.5       9      32 ..     231     253 ..     226     254 .. 0.80
   7 ?   -1.2   0.2       4.4   4.1e+03      18      31 ..     273     287 ..     258     288 .. 0.70
   8 ?    3.1   0.2      0.19   1.8e+02      13      33 .]     376     399 ..     364     399 .. 0.71
   9 ?    1.3   0.0      0.72   6.8e+02       7      30 ..     486     509 ..     486     510 .. 0.90
  10 ?   -1.0   0.3         4   3.7e+03      12      26 ..     585     599 ..     579     602 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.6
                HHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  8 lsyrklgdtdkAlealerlikeYPd 32
                + y++ +++ + l++ + ++k+ P+
  CCE28363.1 18 RNYEE-KQYKRGLKMADLILKKNPK 41
                33444.4999999999999999887 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 6.5
                HHHHHHHHHHHHHH CS
       TPR_6  7 alsyrklgdtdkAl 20
                al + ++g+td+A 
  CCE28363.1 50 ALIFNSQGKTDEAF 63
                67777899***996 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.07
                 HHHHHH.HHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   7 alsyrk.lgdtdkAlealerlikeYPdS 33 
                 +l+yr+   + ++A++a++  +k  P+S
  CCE28363.1  84 GLLYRScK-NFEEAIKAYKFALKLEPES 110
                 89999988.**********999999887 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 4.4
                 HHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdt 16 
                 ++a+s++++ ++
  CCE28363.1 138 LQARSQIRQ-NW 148
                 467777776.44 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.82
                 HHHHHHHHHHHHH CS
       TPR_6  12 klgdtdkAleale 24 
                 ++gd+++Al+ l+
  CCE28363.1 199 AQGDYERALTHLN 211
                 389******9887 PP

  == domain 6  score: 9.6 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   9 syrklgdtdkAlealerlikeYPd 32 
                 +++ lg++d+A +a++ l+++  d
  CCE28363.1 231 LLK-LGRHDEAAKAYRALLDRNAD 253
                 444.67**************9876 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 4.4
                 HHHH.HHHHHHHH-T CS
       TPR_6  18 kAle.alerlikeYP 31 
                 +A++ ++++  k++P
  CCE28363.1 273 EARKaMYDEYAKKFP 287
                 455559999999999 PP

  == domain 8  score: 3.1 bits;  conditional E-value: 0.19
                 H...HHHHHHHHHHHHHHHH-TT- CS
       TPR_6  13 l...gdtdkAlealerlikeYPdS 33 
                      d +kA+e+ ++ i++  +S
  CCE28363.1 376 YhlsRDLAKAMEYIDKAIDKDSNS 399
                 0445699************98887 PP

  == domain 9  score: 1.3 bits;  conditional E-value: 0.72
                 HHHHHHHHHHHHHHHHHHHHHHH- CS
       TPR_6   7 alsyrklgdtdkAlealerlikeY 30 
                 +++y ++g+   Al+ +  +i+ +
  CCE28363.1 486 GEAYARQGNIGLALKRFHAVITIF 509
                 799**************9999865 PP

  == domain 10  score: -1.0 bits;  conditional E-value: 4
                 HHHHHHHHHHHHHHH CS
       TPR_6  12 klgdtdkAlealerl 26 
                 + +++ kA++ l+r+
  CCE28363.1 585 AKKNAKKAKKELQRI 599
                 456999******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1604  (0.089464); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 4554.32
//
Query:       CCE28364.1  [L=204]
Description: related to caffeine-induced death protein Cid2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-51  173.4   0.0    5.6e-51  173.1   0.0    1.1  1  Cid2      Caffeine-induced death protein 2


Domain annotation for each model (and alignments):
>> Cid2  Caffeine-induced death protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.1   0.0   3.1e-55   5.6e-51       1     158 [.      18     175 ..      18     177 .. 0.98

  Alignments for each domain:
  == domain 1  score: 173.1 bits;  conditional E-value: 3.1e-55
        Cid2   1 CfstselrdfLrlsRaaiDDtItqrLNalstpsrsagfdpsstal........aipkesaCaefleevLfpsWqaRedvieyCakvaesedkedeeaal 91 
                 Cfs+ +lrdfLr sRaa+DDtI+q+LN l tp+r +gfdp+sta         +i+++ aC++f  ++Lfp+W+aR+d+++yCa va+s+d++d+ea+l
  CCE28364.1  18 CFSPGTLRDFLRYSRAAVDDTISQNLNGLITPAR-TGFDPNSTAVrtipstpgQISSQ-ACQSFQGQILFPAWKARSDALDYCALVAASPDPDDPEATL 114
                 **********************************.9********9******9776666.**************************************** PP

        Cid2  92 keeeeakaaerasvderlDpyaardrleeresrlkeaeklarlvrnerkvEsIvrartwevlkerCg 158
                 +  e +k +er  +derlDpy+ar  +++re+r   ++ la+lvr+er++E+I+r+rtw vl+erC+
  CCE28364.1 115 RDVEIQKGRERI-IDERLDPYSAR--FFPREAR---TQVLATLVRQERSIEDIIRHRTWTVLQERCR 175
                 ************.9**********..*******...******************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1546.01
//
Query:       CCE28365.1  [L=417]
Description: probable KES1-involved in ergosterol biosynthesis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-61  206.5   1.0    7.6e-59  199.4   1.0    2.0  1  Oxysterol_BP  Oxysterol-binding protein
  ------ inclusion threshold ------
      0.022   14.8   0.2       0.04   14.0   0.2    1.4  1  N-SET         COMPASS (Complex proteins associated with Set1p


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.4   1.0   8.5e-63   7.6e-59       4     360 ..      23     363 ..      19     391 .. 0.87

  Alignments for each domain:
  == domain 1  score: 199.4 bits;  conditional E-value: 8.5e-63
                   CCHTTSTT-BCCCS---GGGEEEEEHHHHHHHCCTTCHHHHHHHC.SSHHHHHHHHHHHHHHCCCGCT......STSSSEEE---TT-EEEEEE.TT CS
  Oxysterol_BP   4 silkkciGkDLskislPvffneplSlLqrlaedleyselLdkaakeddsleRlayVaaFalSsyasti......krrlkKPFNPlLGEtfelvr.ed 93 
                   si +  ++ DLs+++ P f+++  Sl +  + +  +++lL + ++e d+ +R ++V++++lS+++ ++       ++ kKP+NP+LGE f+ ++ ++
    CCE28365.1  23 SIAS--FNGDLSSLTAPPFILSSQSLTEFSSYWATHPSLLIAPVAEPDAAKRALLVLKWFLSTLKHQYasrseqFGNEKKPLNPFLGELFTGSWvDE 117
                   5555..899**************************************9****************99999999998899****************644 PP

                   .CEEEEEEEEEETTTTEEEEEEEE..CTEEEEEEEEEEEEE-SSEEEEEE-SEEEEEE.....EEESEEEEEEE--EEEEE-TTTTS-EEEEEEEEE CS
  Oxysterol_BP  94 .kgfrfiaEQVsHhPpvsAfhaes..egweldgeikvkskflgkslevkpeGtahlel.....lkksgehYtwtkpttivhniivgklwvelsgeve 182
                     ++++i+EQVsHhPp +A+++++  +g++l+g+ + k  f  + + vk+ G+a+l++      + ++e+Y +t p+++++++i+g ++vel g+++
    CCE28365.1 118 aGETTLISEQVSHHPPATAYCIQNkkSGVQLEGYNAQKATFKST-IIVKQIGHAVLTIpvgsgDNMQQERYLITLPSLHIEGLIFGAPFVELDGSTY 213
                   67778*******************8889*************998.889999*******766544559****************************** PP

                   EEETTT--EEEEEEE---SSS---SSEEEEEEEE..TTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT.......-...BSXXGCGSSTTBCC CS
  Oxysterol_BP 183 itnhstgdkakleFkkkglfsskksnkvegkvkd..kkkevlyeisGkwdeelyikkkktekkeeeedasek.......s...kvkekeeqeefese 267
                   i+ +s+g++ak++++ kg++s +k+n++ ++++   k+k+vly+++G+w++e++i + + + ++  + +  +       +   k ++ e+q   es+
    CCE28365.1 214 IS-SSSGYTAKIDYSGKGWLS-GKKNTILATLHPtgKEKDVLYNVTGQWTKEFEIYEGSPKRNSPATLVA-TydaagtaQselKIAPVEKQYPLESR 307
                   **.679**************5.89********9878999****************555544433333322.235555441578999*********** PP

                   CCCCH-----...GGG--HHHHCCT---.TTGGS-TTBGGG-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCCTT.----SSEEEEETTTT CS
  Oxysterol_BP 268 klWkasplpkaeeyygftkfavtlNeieekekslaptDsRlRpDqraleegdideAeeeKkrlEekQRerrkereekk.ewkpkwFekekdpdt 360
                   + W +                v++                      a+++gd+d+ ++eK ++E++QR+ r ++++++ +w+ ++F++++ +d+
    CCE28365.1 308 RAWAK----------------VAE----------------------AIQAGDMDTVSAEKGKIEQAQRNLRNKEKAENrSWERRYFSAVTGEDE 363
                   *****................888......................9***********************9999554438*******9996433 PP

>> N-SET  COMPASS (Complex proteins associated with Set1p) component N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   4.4e-06      0.04      82     162 ..     290     365 ..     244     374 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.4e-06
       N-SET  82 eGykkIpdkeKskYLphrrkvqkaletveaeakkdekaaaaaaaeeaaekesskqeissSRenRannRRfvadieaqkaal 162
                 +   kI   eK+  L+ rr   k  e ++a + ++ +a++ +      e+++ +  ++   enR+ +RR+ ++++ + ++l
  CCE28365.1 290 QSELKIAPVEKQYPLESRRAWAKVAEAIQAGDMDTVSAEKGKI-----EQAQRNLRNKEKAENRSWERRYFSAVTGEDETL 365
                 344699******99***************88888776665544.....4444444445788***********999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2983.71
//
Query:       CCE28366.1  [L=456]
Description: probable FBA1-fructose-bisphosphate aldolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-90  302.1   0.0    4.6e-90  301.9   0.0    1.1  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.9   0.0   2.6e-94   4.6e-90       3     279 ..     115     454 ..     113     455 .. 0.94

  Alignments for each domain:
  == domain 1  score: 301.9 bits;  conditional E-value: 2.6e-94
                    HHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-.............HHHHHHHHHHHHHHHHT...-EEEEEE-- CS
  F_bP_aldolase   3 lkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyag.............gaealaelvraaaeaykkasvpvalhlDH 85 
                    + +l+++A+e+++av+a+nvt+++tv a leaa++aksP+Ilq+s+g+aa++ag             ga a a ++r++a +y+   +pv+lh+DH
     CCE28366.1 115 VLRLFQYAREKQFAVPAINVTSSSTVVASLEAARDAKSPIILQMSQGGAAYFAGkgvsntdqaasiaGAVAGATYIRSIAPSYG---IPVILHTDH 207
                    6789************************************************99***************************887...********* PP

                    --G.....HHHHHHHHHH........S-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------....TT-TTTS--HHHHHHHH CS
  F_bP_aldolase  86 gak.....leglkkaiea........gfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgv....vaeeklyTdpeeaeefv 164
                    +ak     l+g+++a ea        +fsS+MiD+Se+p++ N+++t+++++ra+++++++E+E+G++ggeedgv    v++++lyT+pe++ +++
     CCE28366.1 208 CAKkllpwLDGMLDADEAyfkthgepLFSSHMIDLSEEPVDWNVQTTAKYLKRAAPMKQWLEMEIGITGGEEDGVnneeVDNASLYTQPEDILNIY 303
                    ***********************9999************************************************777777777************ PP

                    HHHH....-EEEE--SS---SS--SS...--THHHHHHHHHH...........--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHHHH CS
  F_bP_aldolase 165 eetg....vdalAvaiGnvHGvykpk.pkLdferlkeiqkav...........vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkavkk 244
                    ++++     +++A+ +GnvHGvykp+  kL++e+l ++q+ v           v +V+HGgsg++++e+ +ai +GvvK+N+dtd++ ay++++++
     CCE28366.1 304 NTLSpispYFSIAAGFGNVHGVYKPGnVKLHPELLGKHQAHVkaalgskadkpVYFVFHGGSGSSKQEYLDAIGHGVVKVNVDTDMQFAYMAGIRD 399
                    **************************555****************99999944447**************************************88 PP

                    G...................GE-HH.H-HHHHHHHHHHHHHHHHHHHHHHTT-SS CS
  F_bP_aldolase 245 e...................kenkk.ydprkllkeaeeamkevvkekiellgsag 279
                    +                   k+nkk +dpr++++e+e++m+++v e+++++++ g
     CCE28366.1 400 YmlnkkgylmtpvgnpdgedKPNKKfFDPRVWVREGEKTMSARVTEALKDFNCVG 454
                    87777677777666666655599*****************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3519.81
//
Query:       CCE28367.1  [L=469]
Description: probable BCS1 protein precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-42  143.5   0.0    9.4e-42  143.1   0.0    1.2  1  BCS1_N        BCS1 N terminal
    6.6e-17   62.2   0.0    1.1e-16   61.5   0.0    1.3  1  AAA           ATPase family associated with various cellular 
      0.001   18.6   0.0     0.0018   17.9   0.0    1.3  1  AAA_7         P-loop containing dynein motor region
     0.0031   16.7   0.0     0.0055   15.9   0.0    1.3  1  DUF815        Protein of unknown function (DUF815)
     0.0054   16.3   0.0      0.024   14.2   0.0    1.9  2  AAA_25        AAA domain
     0.0066   16.2   0.0      0.015   15.0   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
       0.01   16.3   0.0      0.022   15.1   0.0    1.5  1  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.027   14.5   0.0    1.6  1  AAA_5         AAA domain (dynein-related subfamily)
      0.015   15.8   0.0      0.032   14.8   0.0    1.5  1  AAA_18        AAA domain
      0.019   15.5   0.0      0.037   14.6   0.0    1.4  1  ABC_tran      ABC transporter
      0.024   14.9   0.0      0.044   14.1   0.0    1.4  1  AAA_22        AAA domain
       0.03   14.0   0.0      0.061   13.1   0.0    1.4  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
      0.044   14.0   0.0       0.13   12.4   0.0    1.7  1  AAA_33        AAA domain
      0.047   13.8   0.0       0.11   12.5   0.0    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
      0.075   12.9   0.2        2.7    7.9   0.0    2.5  3  NACHT         NACHT domain
       0.16   12.4   0.0       0.32   11.4   0.0    1.6  1  RNA_helicase  RNA helicase
       0.21   11.5   0.0       0.45   10.4   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
       0.26   10.1   0.0       0.37    9.6   0.0    1.1  1  PPV_E1_C      Papillomavirus helicase


Domain annotation for each model (and alignments):
>> BCS1_N  BCS1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.1   0.0   9.4e-45   9.4e-42       1     187 []      31     210 ..      31     210 .. 0.93

  Alignments for each domain:
  == domain 1  score: 143.1 bits;  conditional E-value: 9.4e-45
      BCS1_N   1 lgallaaarrllselaslirrrflvsveissdDeaydwvlaWlsaq........pasrrsrelsvetrtksrssdssaeedededeeedgkkkkplryl 91 
                 lga++a+ar+++ +++ +ir+r+lv+veis++D+ay+w+laWls+         +  +r ++lsv+t+t++++ +  +              ++++ ++
  CCE28367.1  31 LGAAAAFARKGAVTAFGAIRHRLLVNVEISKQDPAYPWILAWLSQPrehtgiiaSRVTRIHNLSVTTATSNARGHGGSG-----------PVNASFFLQ 118
                 699*****************************************9899*****9999999********99996222211...........22569**** PP

      BCS1_N  92 PavgtthlfrykgrllavtRereekssdsetgapeetltltclgrsreilkeLleearelalkkqegktviyraaagsggeWrrvas.RpkRplstV 187
                 P++g +h++++  +++av+Re+ +++++++tg+p+e l+lt+l+++r+ ++ +++ea++la k++egkt++y+a+   g++W+++++ R+kRpl++V
  CCE28367.1 119 PGYG-RHIVKFGSAYIAVNREK-HSTANMNTGEPHEILQLTTLWAHRHAFEGIFAEAHKLAAKANEGKTIVYSAR---GMDWTPLGDpRKKRPLGSV 210
                 ****.6***************9.789999********************************************88...******************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   1.1e-19   1.1e-16       2     131 ..     246     370 ..     245     371 .. 0.90

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 1.1e-19
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvk 97 
                 ll+GppG GK+++++a+a el++ +  i++se+       + +k++ l++++ +    + l+++++da + +r   + +  + ++ + + Ll++ldgv 
  CCE28367.1 246 LLFGPPGSGKSSFIQALAGELDFGVAMINLSEMG-----MTDDKLAYLLTKLPK---RCLLLLEDADAAFVNRrqrDADGYNGANVTFSGLLNALDGVA 336
                 9*********************999999999998.....789999999988744...4************99986655667788999************ PP

                 TSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  98 kkeskvivigatnrpdkldpallr.gRfdrkieie 131
                   e+  i  ++tn++d+ldpal+r gR+d+ ++i+
  CCE28367.1 337 AGEE-RIAFLTTNHIDRLDPALIRpGRVDMMLRIG 370
                 *755.99999*******************998875 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.8e-06    0.0018      20      89 ..     229     295 ..     216     297 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.8e-06
       AAA_7  20 vrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekr 89 
                 +r+++ ++  +  ++  ll Gp G+GK++ i+ l  +ld   + +++in+s +    +    +  kl kr
  CCE28367.1 229 ARQQWYVDRGIPYRRGYLLFGPPGSGKSSFIQALAGELD---FGVAMINLSEMGMTDDKLAYLLTKLPKR 295
                 68999**********************************...9999999999877777777777777766 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.5e-06    0.0055      56     115 ..     245     302 ..     236     313 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.5e-06
      DUF815  56 vLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellrerperfilfvDD 115
                  LL+G  G+GKSs ++al  e+ + g+++i++++  +++ +kl  ll + p+r++l++ D
  CCE28367.1 245 YLLFGPPGSGKSSFIQALAGEL-DFGVAMINLSEMGMTD-DKLAYLLTKLPKRCLLLLED 302
                 59****************9997.579*******999887.89999**********99987 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.1   1.1e+03      36      71 ..     174     206 ..     162     220 .. 0.75
   2 !   14.2   0.0   2.5e-05     0.024      13      54 ..     222     263 ..     214     271 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.1
      AAA_25  36 allaGapgtGKttlaldlalava.tGkpwlgpvapeq 71 
                 + la+    GKt + +  + +++ +G+p     + ++
  CCE28367.1 174 HKLAAKANEGKTIVYSARGMDWTpLGDPR----KKRP 206
                 56899999999999999999998877753....3344 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.5e-05
      AAA_25  13 adlaapppprrwlvkgllpagelallaGapgtGKttlaldla 54 
                  d++  +++++w+v++ +p     ll+G+pg+GK+ +   la
  CCE28367.1 222 TDVNDFLARQQWYVDRGIPYRRGYLLFGPPGSGKSSFIQALA 263
                 566677899******999*******************99888 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.5e-05     0.015      20      42 ..     242     262 ..     231     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
      AAA_29  20 dlkgatlltGpsGsGKSTllDAi 42 
                 + +g +ll Gp GsGKS+++ A+
  CCE28367.1 242 R-RG-YLLFGPPGSGKSSFIQAL 262
                 3.66.9**************997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.2e-05     0.022      24     127 ..     240     332 ..     228     358 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.2e-05
      AAA_16  24 p..elvllsGesGvGKsslvrellralekdggiflrgkcdqlesa...ipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeas 117
                 p  +  ll G++G+GKss +++l+ +l    + ++  +  + ++    ++y  l++ l   + +  ll++a++a +++ ++  ++  +         a+
  CCE28367.1 240 PyrRGYLLFGPPGSGKSSFIQALAGELD---FGVAMINLSEMGMTddkLAY--LLTKL-P-KRCLLLLEDADAAFVNRRQRDADGYNG---------AN 322
                 455889*****************97666...45555555555333222555..77777.4.566666666666666666666666555.........33 PP

      AAA_16 118 rllellkrll 127
                   +  l ++l
  CCE28367.1 323 VTFSGLLNAL 332
                 3333333333 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.7e-05     0.027       3      41 ..     246     285 ..     244     291 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.7e-05
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--T.T--HHHH CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltr.dtteedl 41 
                 lL GppG+gKs++++ la  l   v +++l++ ++t ++l
  CCE28367.1 246 LLFGPPGSGKSSFIQALAGELDFGVAMINLSEmGMTDDKL 285
                 8********************9999999998635666555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.2e-05     0.032       2      31 ..     246     278 ..     246     322 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.2e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf...gvnlrdv 31 
                 ll G+pG+GK+++ ++L+ +l f    +nl+++
  CCE28367.1 246 LLFGPPGSGKSSFIQALAGELDFgvaMINLSEM 278
                 589**************9998885565555444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.7e-05     0.037      14      37 ..     245     268 ..     235     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.7e-05
                 EEEEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkp 37 
                 + ++G+ G+GKS+++++lag+l+ 
  CCE28367.1 245 YLLFGPPGSGKSSFIQALAGELDF 268
                 789*****************9875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.4e-05     0.044       8      62 ..     245     290 ..     240     315 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.4e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellr 62 
                  +++G++G+GK+  ++ l+ +l         + +v+ ++l++ +  +d l  ll 
  CCE28367.1 245 YLLFGPPGSGKSSFIQALAGEL---------DFGVAMINLSEMGMTDDKLAYLLT 290
                 689******************9.........899999988888844444444444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.2e-05     0.061      37      91 ..     246     301 ..     241     308 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.2e-05
      RuvB_N  37 llyGpPGlGkttlakiiakelgvklkitsgPvlekagd.laalltnleekdvlfid 91 
                 ll+GpPG Gk+++ + +a el+  + +     +  + d la llt+l ++ +l+++
  CCE28367.1 246 LLFGPPGSGKSSFIQALAGELDFGVAMINLSEMGMTDDkLAYLLTKLPKRCLLLLE 301
                 89********************9999988877776655388999999998888775 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00013      0.13       3      25 ..     246     269 ..     245     279 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
      AAA_33   3 llvGlpGsGKstlaerllkklg.a 25 
                 ll G+pGsGKs +++ l+ +l+ +
  CCE28367.1 246 LLFGPPGSGKSSFIQALAGELDfG 269
                 578***************999851 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011      0.11       3      23 ..     246     267 ..     245     299 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
                 EEEESTTSSHHHHHHHHHTS.T CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.k 23 
                 +++G p +GKS++i+al ge  
  CCE28367.1 246 LLFGPPGSGKSSFIQALAGElD 267
                 589***************9752 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         9   8.9e+03     101     134 ..      61      92 ..      54     100 .. 0.73
   2 ?    7.9   0.0    0.0027       2.7       4      24 ..     246     266 ..     243     271 .. 0.87
   3 ?    2.3   0.0      0.14   1.4e+02      66      99 ..     279     312 ..     273     335 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9
                 ........HHHHHCTTTTT--EEEEEEECCCHHH CS
       NACHT 101 ekqpvrtlLselirkkllpeasllltvrpralrd 134
                 ++ p+  ++  ++++  ++e + ++++r ++  +
  CCE28367.1  61 KQDPAYPWILAWLSQ--PREHTGIIASRVTRIHN 92 
                 456778899999998..88888888888776655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0027
                 EEEC-TTTCHHHHHHHHHHHH CS
       NACHT   4 ilqGeaGsGKTtLlqklalaw 24 
                 +l G++GsGK+ ++q la ++
  CCE28367.1 246 LLFGPPGSGKSSFIQALAGEL 266
                 678*************99776 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.14
                 -SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH CS
       NACHT  66 aapvsevwavllelperlLlilDglDelvtdlgq 99 
                 +++ ++   +l++lp+r Ll+l ++D +    +q
  CCE28367.1 279 GMTDDKLAYLLTKLPKRCLLLLEDADAAFVNRRQ 312
                 566667778899***********99998776666 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00032      0.32       2      23 ..     246     267 ..     245     324 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00032
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   +l+Gp+g GKS++++ La +l 
    CCE28367.1 246 LLFGPPGSGKSSFIQALAGELD 267
                   689*************998875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00045      0.45     103     130 ..     246     273 ..     241     281 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00045
                  EEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpelelktgev 130
                  +l G+ G GKS++i al++el+  ++ +
   CCE28367.1 246 LLFGPPGSGKSSFIQALAGELDFGVAMI 273
                  799*****************99888766 PP

>> PPV_E1_C  Papillomavirus helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00037      0.37     248     286 ..     227     266 ..     219     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00037
    PPV_E1_C 248 fltalkefL.kgvPkknclvllGppntGkslfamslikfL 286
                 fl+  + ++ +g+P +   +l+Gpp +Gks f ++l   L
  CCE28367.1 227 FLARQQWYVdRGIPYRRGYLLFGPPGSGKSSFIQALAGEL 266
                 555555554479********************99987555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3645.76
//
Query:       CCE28368.1  [L=564]
Description: probable amino acid transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.8e-123  411.6  40.6   4.3e-123  411.4  40.6    1.0  1  AA_permease    Amino acid permease
    5.9e-29  101.1  43.6    7.8e-29  100.7  43.6    1.0  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  411.4  40.6  4.8e-127  4.3e-123       1     472 [.      66     516 ..      66     523 .. 0.97

  Alignments for each domain:
  == domain 1  score: 411.4 bits;  conditional E-value: 4.8e-127
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+ ++al+g+iG gl+vg g +ls++Gp+++l+++ ++g++ f +m+slge+ t++p +g+f  +a+r +++++++++G+ny++ w++vla+e++++ 
   CCE28368.1  66 HLSMMALAGIIGPGLLVGAGGALSNGGPASLLIGFSVIGLIAFSIMQSLGEVTTLFPAGGSFVSLAERMVDKSFSVAVGWNYFIIWAAVLANEYNVIC 163
                  899*********************************************************************************************** PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga..gfrflgdngsifknnlppgfakee 194
                  +++++w  v+ +p +w++ ++f+v++++++l+gv+++geaef+lal+ki+ + a++i++ii+ agg   ++   gf++++d+g+    + ++g     
   CCE28368.1 164 SILTYW--VPRVP-LWGFFLIFWVIFTGFQLLGVEAFGEAEFWLALLKILGLTAYFIFSIIYAAGGLVGQKEplGFQYWHDPGA----FNGKG----- 249
                  ******..*****.*********************************************999999877666669**********....56666..... PP

  AA_permease 195 egafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlapl 291
                     f +++ vfv+++  ++G e+va++a E+++P  ++P a++q+++ri+++Y++s+++ g+++p n+  l+n+ a+a  sp+ i+i+ +g+ +  +l
   CCE28368.1 250 ---FRGVATVFVFCSTFYAGVESVAVAATETRNPGVAVPQAVRQIFWRIIFVYLGSAFFFGITCPANAEELVNGGAKAlQSPMTIAIQTAGWQGGVHL 344
                  ...**************************************************************************99******************* PP

  AA_permease 292 inaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylr 389
                  ina+il+++ls++nss+y++sR+++ +a++g aP++++k +krgvP+ ai+++ +++ ++++  +++++a +++ +++++s++++++vw++i+l ++r
   CCE28368.1 345 INAFILITCLSAVNSSIYIGSRTIFYMAQSGKAPRFVGKTDKRGVPIWAIVITNAVGSISMM--NVSTGASKAYSYIVNLSGVSTFLVWGSISLIHIR 440
                  *************************************************************5..5555555*************************** PP

  AA_permease 390 fRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvkn 472
                  fR+a+ +q r+++el+fka  +p+ ++++laa+i+++l+++++ + +       ++a+ f+ ay+ ++lf +i+++ kl+++ 
   CCE28368.1 441 FRRAWVAQDRKLSELPFKAMWYPYVAYFGLAANIFLALVQGWTTLSP-------FDAGAFVDAYILLPLFGVIYLACKLYWRG 516
                  *******************************************9999.......9*************************985 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7  43.6   8.7e-33   7.8e-29       8     401 ..      69     479 ..      63     500 .. 0.83

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 8.7e-33
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    ++++  +ig g +v    ++ +ggpa++l+++ +++++ ++ +  + E+++++p  g  ++ ++++  k +   ++w +++ +++vl +  ++++ 
     CCE28368.1  69 MMALAGIIGPGLLVGAggALSNGGPASLLIGFSVIGLIAFSIMQSLGEVTTLFPAGGSFVSLAERMVDKSFSVAVGWNYFIIWAAVL-ANEYNVIC 163
                    56666666666666656556679999888777666666666677788****888888888888999999999*******99999999.88899888 PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdg.ggfssl.....stetdtffpngwpgvl 191
                    ++l+ + p +     +  +++ ++ ++++ ++++g+   + + ++l++lkil++ + +i   +++++g  g+ ++     +++ + f++ g  gv+
     CCE28368.1 164 SILTYWVPRV-----PLWGFFLIFWVIFTGFQLLGVEAFGEAEFWLALLKILGLTAYFIFSIIYAAGGlVGQKEPlgfqyWHDPGAFNGKGFRGVA 254
                    8888887766.....5667788889999999********************988888887777777664355555785554444459999****** PP

  AA_permease_2 192 lgllivlwsfdGfesaanvseevkk.k.dvpkaifigllivlvlyllvniaflgvvpddeianlsn....lgsvaalffeavggkvvaiivvilia 281
                     ++      ++G+es+a+ ++e ++    vp a   ++  ++++yl+ +++f +  p +  + +++    l s++++  +++g + + ++++++i 
     CCE28368.1 255 TVFVFCSTFYAGVESVAVAATETRNpGvAVPQAVRQIFWRIIFVYLGSAFFFGITCPANAEELVNGgakaLQSPMTIAIQTAGWQGGVHLINAFIL 350
                    **********************9997547***********************9999998776666634545567********************** PP

  AA_permease_2 282 lsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrp 377
                    + +l a+n+ +++ sr+++ +a+ g  Prf  k++k+g pi ai++t+ v +i ++ ++++ s+ay++++++s ++ +++++ ++  ++ +r++r 
     CCE28368.1 351 ITCLSAVNSSIYIGSRTIFYMAQSGKAPRFVGKTDKRGVPIWAIVITNAVGSISMMNVSTGASKAYSYIVNLSGVSTFLVWGSIS--LIHIRFRRA 444
                    ***************************************************99999998888********************877..888888887 PP

  AA_permease_2 378 ..hlkr.........pgkilvaiigalfllfllva 401
                       + r         ++++ va +g+  ++fl  +
     CCE28368.1 445 wvAQDRklselpfkaMWYPYVAYFGLAANIFLALV 479
                    54223347788875644457999999999998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4309.25
//
Query:       CCE28369.1  [L=642]
Description: related to sialidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4873.72
//
Query:       CCE28370.1  [L=1286]
Description: uncharacterized protein CPUR_01845 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-19   68.1   0.1    2.4e-18   66.3   0.1    2.0  1  VPS9        Vacuolar sorting protein 9 (VPS9) domain
    3.4e-14   52.7   0.3    4.7e-12   45.9   0.1    4.0  4  Ank_5       Ankyrin repeats (many copies)
    5.6e-11   42.9   2.3     0.0068   17.0   0.1    4.3  4  Ank_2       Ankyrin repeats (3 copies)
    3.3e-08   33.9   0.2     0.0013   19.2   0.1    4.7  4  Ank_4       Ankyrin repeats (many copies)
    1.4e-05   25.1   1.3       0.31   11.7   0.0    5.5  5  Ank_3       Ankyrin repeat
  ------ inclusion threshold ------
      0.019   15.0   0.7      0.083   12.9   0.1    2.4  2  Laminin_II  Laminin Domain II
      0.047   13.7   0.3       0.12   12.3   0.0    1.9  2  PX          PX domain
      0.069   13.6   0.1         29    5.3   0.0    4.2  4  Ank         Ankyrin repeat
       0.09   12.1   0.2       0.19   11.1   0.2    1.4  1  YPEB        YpeB sporulation


Domain annotation for each model (and alignments):
>> VPS9  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.1   1.2e-21   2.4e-18       3     100 ..     386     500 ..     384     504 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 1.2e-21
        VPS9   3 qaseeLkklseaksPreKlkcllrtieeiteav................skseegeslgaDdlLPiliyviikssppnlysnvqfikrFr.sktllege 84 
                  a+ee+kk+s+a sP e++ +ll+t++ +++++                + +++ ++++aD+l ++l+yv+i+s+++nl++ + +i++F   ++  +ge
  CCE28370.1 386 PAIEEFKKISSATSPAEMMGTLLSTTKAVSHLTgttktnashdsdkeetAYEKAIMTVNADTLVSLLLYVVIRSQVRNLHARLSYIRNFIfIDDVDSGE 484
                 589********************************************998999999**********************************999****** PP

        VPS9  85 egYylttleaavefie 100
                  gY+l+t+ea+++++ 
  CCE28370.1 485 MGYALSTFEAVLAYLA 500
                 *************986 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.5     3e+03      10      25 ..     658     673 ..     655     680 .. 0.79
   2 ?    0.9   0.0      0.32   6.3e+02      13      36 ..     700     723 ..     693     733 .. 0.82
   3 ?   -1.1   0.0       1.3   2.5e+03      41      53 ..     768     780 ..     765     780 .. 0.85
   4 !   45.9   0.1   2.4e-15   4.7e-12       2      56 .]     841     895 ..     839     895 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
       Ank_5  10 nrldgggntpLhvAak 25 
                 ++++  g++ L++A+ 
  CCE28370.1 658 QTSNSSGESMLMMAIQ 673
                 56788999******96 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.32
       Ank_5  13 dgggntpLhvAakygaadvvrlLl 36 
                 +++ +t L  A+  g+ ++v +Ll
  CCE28370.1 700 NNEDTTLLSAAVQLGHMELVDMLL 723
                 45556******************9 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.3
       Ank_5  41 dlnltdsrGltal 53 
                  ++++d++G+t+l
  CCE28370.1 768 PWRQRDKNGQTPL 780
                 68999*****997 PP

  == domain 4  score: 45.9 bits;  conditional E-value: 2.4e-15
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56 
                 + + ++dvn+++++++t+L+vA+kyg+ d+vr L+ ++++d  ++++rGlta++lA
  CCE28370.1 841 HYC-DVDVNATNEKKFTALMVASKYGRYDMVRCLFaDPRVDVCAKEARGLTAVELA 895
                 444.5*************************************************99 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         9   1.8e+04      51      73 ..     430     453 ..     406     457 .. 0.56
   2 !   16.6   0.0   4.3e-06    0.0087      12      74 ..     652     724 ..     643     734 .. 0.73
   3 !    6.4   0.0     0.007        14      21      58 ..     773     814 ..     753     829 .. 0.53
   4 !   17.0   0.1   3.4e-06    0.0068      25      80 ..     822     882 ..     810     885 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 9
       Ank_2  51 ndgrtpLhyAars.ghleivklLl 73 
                 ++ +t+   A+   +   +v lLl
  CCE28370.1 430 DKEETAYEKAIMTvNADTLVSLLL 453
                 445666667776655555555555 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 4.3e-06
       Ank_2  12 lvklLlegadpnkngktaLhyAakngnleivklLle...h.........adndgrtpLhyAarsghleivklLle 74 
                  v+ L + ++  + g++ L+ A+++ n   + +L +   +         ++n+ +t L +A++ gh e+v++Ll 
  CCE28370.1 652 SVERLAQTSN--SSGESMLMMAIQSENPASLGYLFSlsgYyslevllqdMNNEDTTLLSAAVQLGHMELVDMLLG 724
                 5566652222..3799*********999989999986551566677644558888999999988*********94 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.007
       Ank_2  21 dpnkngktaLhyAakngnl....eiv..klLleh.adndgrtpLh 58 
                 d  kng+t+L++ +++ ++    e+v   l+++  a ndg+ +Lh
  CCE28370.1 773 D--KNGQTPLFAMCRSYDNenyyEMVetGLMVARdAQNDGQ-ALH 814
                 2..38999999999975441112566323333323223333.333 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 3.4e-06
       Ank_2  25 ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLl.ekgadin 80 
                 +g+t Lh+   n+ + ++++L         ++++  t+L++A+++g++++v+ L+ +  +d+ 
  CCE28370.1 822 KGNTLLHIM--NDPRLAMRILHYCdvdvnaTNEKKFTALMVASKYGRYDMVRCLFaDPRVDVC 882
                 588888854..4333457777743656454447788****************99944466665 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.043        85      30      54 ..     659     683 ..     638     684 .. 0.84
   2 ?    4.6   0.0     0.026        53       2      22 ..     704     724 ..     702     786 .. 0.80
   3 ?   -1.4   0.0       1.9   3.8e+03      29      41 ..     818     829 ..     817     829 .. 0.86
   4 !   19.2   0.1   6.6e-07    0.0013      10      54 ..     829     873 ..     823     874 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.043
       Ank_4  30 qdnrsGetalhiAakrgnveilklL 54 
                 ++n+sGe+ l +A++ +n+  l +L
  CCE28370.1 659 TSNSSGESMLMMAIQSENPASLGYL 683
                 489***************9999887 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.026
       Ank_4   2 ltaLhyaaisgrlelvrlLle 22 
                 +t+L +a++ g++elv+ Ll 
  CCE28370.1 704 TTLLSAAVQLGHMELVDMLLG 724
                 467777888**********96 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.9
       Ank_4  29 aqdnrsGetalhi 41 
                 ++ ++ G+t+lhi
  CCE28370.1 818 HV-DAKGNTLLHI 829
                 67.899******7 PP

  == domain 4  score: 19.2 bits;  conditional E-value: 6.6e-07
       Ank_4  10 isgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklL 54 
                 i+++ +l++++l + ++d+na+ n+  +tal  A k g++++++ L
  CCE28370.1 829 IMNDPRLAMRILHYcDVDVNAT-NEKKFTALMVASKYGRYDMVRCL 873
                 577888888888888*******.********************988 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0       0.2     4e+02       2      21 ..     664     683 ..     663     690 .. 0.83
   2 ?    2.9   0.1      0.11   2.2e+02       4      23 ..     705     724 ..     705     729 .. 0.91
   3 ?    0.5   0.0      0.69   1.4e+03       1      12 [.     775     786 ..     775     787 .. 0.91
   4 ?   -0.1   0.1       1.1   2.2e+03       2      12 ..     823     831 ..     822     849 .. 0.57
   5 !   11.7   0.0   0.00016      0.31       4      29 ..     856     881 ..     853     883 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.2
       Ank_3   2 GetpLhlAarsgnleivkfL 21 
                 Ge++L++A+ s n++ + +L
  CCE28370.1 664 GESMLMMAIQSENPASLGYL 683
                 99*********999656666 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.11
       Ank_3   4 tpLhlAarsgnleivkfLle 23 
                 t+L  A+  g+ e+v++Ll 
  CCE28370.1 705 TLLSAAVQLGHMELVDMLLG 724
                 8999**************97 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.69
       Ank_3   1 nGetpLhlAars 12 
                 nG+tpL+  +rs
  CCE28370.1 775 NGQTPLFAMCRS 786
                 7******99996 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1.1
       Ank_3   2 GetpLhlAars 12 
                 G+t+Lh+  ++
  CCE28370.1 823 GNTLLHI--MN 831
                 99****4..44 PP

  == domain 5  score: 11.7 bits;  conditional E-value: 0.00016
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 t+L++A ++g++++v+ L+  + +dv
  CCE28370.1 856 TALMVASKYGRYDMVRCLFADPRVDV 881
                 9*****************99888876 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.2e-05     0.083      17      71 ..    1041    1094 ..    1035    1096 .. 0.92
   2 ?   -3.3   0.0       4.3   8.7e+03      27      55 ..    1213    1241 ..    1208    1249 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTT CS
  Laminin_II   17 eqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqL 71  
                  + + ++++++e++ke+++ ++++ +e+++ v+ a  ++r+++ s k++++ a+ L
  CCE28370.1 1041 RTKLKVETRIEKIKEEYEPVRDT-REVEQFVNHARDTVRSVSYSTKTVTRRANGL 1094
                  55678899***************.***************************9976 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.3
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II   27 entkeklseinrsveetnekvkdankair 55  
                  ++ +++++ ++++++ t++ v +   + +
  CCE28370.1 1213 KKFRQEAEYLAKELRYTQQTVAAELAGWQ 1241
                  44555555555555555555554444433 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       4.5   8.9e+03      45      67 ..     190     232 ..     187     249 .. 0.61
   2 ?   12.3   0.0   6.3e-05      0.12      36     111 ..     953    1029 ..     939    1031 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.5
                 HHHHHHHHHHHT....................TSTSTSSSTSG CS
          PX  45 eeLhskLlrkfp....................rvkiPplPkkv 67 
                  ++h+ L ++ +                    +  +Pp P+++
  CCE28370.1 190 RNFHELLNNFPViarqmrpgleklftefrallEKPLPPPPSAS 232
                 5666544444336655555555555565556566666666655 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 6.3e-05
                  EEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSS.CTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHH CS
          PX   36 tvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsv.rkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFLe 111 
                  t +R+  +Fe+L + L ++ p++ iP++ + +++ +   k ++++++  +++ + +L+ +l+hp l+  e+l eF+ 
  CCE28370.1  953 TSRRSLAEFEQLARLLAEENPASWIPSMSDIRSPFQIpVKPSRAILRDIQAKTDWFLRIMLSHPTLSTHEMLWEFFL 1029
                  45789****************8888888775544322567799********************************95 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.37   7.5e+02       4      24 ..     705     724 ..     702     733 .. 0.79
   2 ?   -2.0   0.0       3.1   6.1e+03       1      10 [.     775     784 ..     775     797 .. 0.72
   3 ?    1.0   0.1      0.34   6.7e+02       2      30 ..     823     850 ..     822     852 .. 0.57
   4 ?    5.3   0.0     0.015        29       3      21 ..     855     873 ..     854     885 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.37
                 BHHHHHHHHTTHHHHHHHHTT CS
         Ank   4 TPLHlAatngkkriiklLLhG 24 
                 T L  A++ g+ + + +LL G
  CCE28370.1 705 TLLSAAVQLGHMELVDMLL-G 724
                 77888999***********.6 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.1
                 TSBBHHHHHH CS
         Ank   1 dGnTPLHlAa 10 
                 +G TPL   +
  CCE28370.1 775 NGQTPLFAMC 784
                 7*****7555 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.34
                 SBBHHHHHHHHTTHHHHHHHH..TTTSTTCB CS
         Ank   2 GnTPLHlAatngkkriiklLL..hGAnlnal 30 
                 GnT LH+    +++r +  +L  +  ++na+
  CCE28370.1 823 GNTLLHI-M--NDPRLAMRILhyCDVDVNAT 850
                 9*****9.6..44444444552224556665 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.015
                 BBHHHHHHHHTTHHHHHHH CS
         Ank   3 nTPLHlAatngkkriiklL 21 
                 +T+L++A+ +g  ++++ L
  CCE28370.1 855 FTALMVASKYGRYDMVRCL 873
                 8*******99988899855 PP

>> YPEB  YpeB sporulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   9.4e-05      0.19     109     157 ..    1201    1249 ..    1197    1276 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.4e-05
        YPEB  109 gepLteeeyktLeeLyeqakelekeLrkvqekvaegglrwgelekalas 157 
                   + +++ + k  ++++++a++l+keLr +q++va++   w+++  ++ +
  CCE28370.1 1201 RQRIQDGKEKRAKKFRQEAEYLAKELRYTQQTVAAELAGWQDIHDKMGR 1249
                  5678888889999******************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.46
# Mc/sec: 8334.82
//
Query:       CCE28371.1  [L=889]
Description: related to vacuolar protein-sorting protein VPS35 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
          0 1018.4   0.5          0 1018.1   0.5    1.0  1  Vps35     Vacuolar protein sorting-associated protein 35


Domain annotation for each model (and alignments):
>> Vps35  Vacuolar protein sorting-associated protein 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1018.1   0.5         0         0       1     730 []      13     851 ..      13     851 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1018.1 bits;  conditional E-value: 0
       Vps35   1 lLeealavvkeqsflmkralee.dklmdaLkhasnmlseLrtssLsPkqYYeLYmavfdeLrhLssyLkdehkkkkkkladLYelVQyagnivpRLYLl 98 
                 lLe+al +v++q+ lm+++l++ +klmdaLk++s+++seLrtssL PkqYYeLYm+vfd+Lr+Ls +L+++h+   ++ladLYelVQyagni+pRLYL+
  CCE28371.1  13 LLEDALVAVRQQTSLMRKCLDTpGKLMDALKCCSTLVSELRTSSLGPKQYYELYMSVFDALRYLSVHLRESHPV--NHLADLYELVQYAGNIIPRLYLM 109
                 69********************9**************************************************9..569******************** PP

       Vps35  99 itvGtvyikskdapakeilkDlvEmcrGvQhPiRGLFLRyYLsqmtkdlLpdteseeeeeegelkdsieflltNFiEmnkLWvRlqhqghsrerekrek 197
                 itvGt+y++++dap+ke++kD+++m+rGvQhPiRGLFLRyYLs++++d Lp+t+  +e++eg+l dsi+f+ltNF+EmnkLWvRlqhqghsrere+r +
  CCE28371.1 110 ITVGTAYMSIEDAPVKELMKDMMDMSRGVQHPIRGLFLRYYLSGQVRDFLPTTD--SEGPEGNLGDSINFILTNFVEMNKLWVRLQHQGHSREREQRIR 206
                 ****************************************************97..679**************************************** PP

       Vps35 198 eRkeLkiLVGsnLvrLsqLegvdlelYkekiLpkileqivqcrDvlaQeYLldviiqvFpdefhlatLdkllsailklnpkvnikeilisLidRLakya 296
                 eRkeL++LVGsn+vrLsqL  vdle+Yk++iL ++leq+vqcrDvlaQeYLl+vi+qvFpdefhl+ Ld++l+a+++lnp+vn+k+i+i L+dRL++ya
  CCE28371.1 207 ERKELQLLVGSNIVRLSQL--VDLETYKSSILGPLLEQVVQCRDVLAQEYLLEVITQVFPDEFHLHALDQILAAVSRLNPHVNVKAIVIGLMDRLSEYA 303
                 *******************..9***************************************************************************** PP

       Vps35 297 er..............................................................................................ekk 301
                 +r                                                                                              + +
  CCE28371.1 304 DRegaknkeadqeqveaealaallnkvrlskepdsvaneaeeppriepesganagsdtgaddtnrdttshvntgddtstvaesiapsnagteattlNGQ 402
                 ******************************************************************************************999876444 PP

       Vps35 302 sevpedvdlfevfweqleelvearpdlsledilallesllnlslklypdnlenvdkvlelaaeklkevel.eeleskeaeeellkLLlapikslksvlt 399
                  +   +v+l+evf+ q+++lv+a+ +l+++di+all+sl+nl+l+ ypd+l++vd+++ +a++k++e  + ++l+s+ a+++ll+LL ap++++ s++t
  CCE28371.1 403 GNDGANVQLYEVFFAQVKNLVDAQ-HLPIQDIIALLVSLCNLALNNYPDRLDYVDQIFAFATQKTREHMNnADLHSPPAQQSLLALLKAPLTHYVSIFT 500
                 44555****************855.9***************************************98655799************************** PP

       Vps35 400 vlklenykellsllsyktrkkvaleivdaileeketkietleevekllellsvlikdekd...............keeeefaeeqelvaklvhlikndd 483
                 +l+l++y +l++++sy tr++va +i++++l+ ++tki+++e++e++le++svlik+ ++               +  +e+ eeq+l+a++vhl+++++
  CCE28371.1 501 ALSLPTYVPLFQCQSYPTRRAVAGDIIRTLLK-DHTKISKPEQLENVLEIMSVLIKEGSQapqgypasaqrrpveT--DETVEEQGLLARMVHLLHAEN 596
                 *******************************8.57*********************88866778888877776422..68******************* PP

       Vps35 484 ldkqfklllllrkkllkggekrikytlpalitallklarklkklkkkekekkekleekvkklfkfihqliselvskae...aaelalklflqaalvadq 579
                 +d+qfkll+++rk++ +g++ ri++t+p+l+ta++kl+r++   kk+e+  ++++e+++++l+kf+h+++s+l+s+++    a+lal+lf++a+++ad 
  CCE28371.1 597 NDTQFKLLQMTRKAYADGND-RIRTTTPPLLTACIKLCRSF---KKREHL-DDNWETQSNALYKFMHSMLSTLYSRVNgpgIADLALRLFCSAGQTADM 690
                 ***************99988.*******************9...566666.78****************************99**************** PP

       Vps35 580 leleeiayefftqaftiYeesisdskaqlqaivliigtLqktrslseenyetLitkltlhaskLlkkkdqcravllcshLfw.........ee.eekyr 668
                 +++ee+ayef++qaft+Yee+++dskaq+qa+++i+++L++tr++++eny+tLitk+++h+skLl+k+dqcrav+l+shL+w         ++ +e yr
  CCE28371.1 691 TGFEEVAYEFYAQAFTVYEEAVTDSKAQFQAVCVIASSLHQTRNFGKENYDTLITKCAQHGSKLLRKPDQCRAVYLASHLWWatpiasngeTDeTELYR 789
                 **********************************************************************************88887766421578*** PP

       Vps35 669 dgkrvleCLqkslriAdsimdnavslelfveiLnkylyyfekgneevtekyingLieliken 730
                 dgkrvleCLq++lr+Ad++m++a+s+elfveiL++y+yyf+++ne+vt ky+ngLieli++n
  CCE28371.1 790 DGKRVLECLQRALRVADTCMETATSIELFVEILDRYVYYFDQQNESVTIKYLNGLIELIHSN 851
                 ***********************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (889 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 6137.66
//
Query:       CCE28372.1  [L=914]
Description: related to glutamate carboxypeptidase II [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-35  120.3   0.0    8.2e-35  119.5   0.0    1.4  1  TFR_dimer      Transferrin receptor-like dimerisation domain
      1e-13   51.4   0.0    3.1e-13   49.9   0.0    1.8  1  Peptidase_M28  Peptidase family M28
    5.1e-10   39.2   0.0      1e-09   38.3   0.0    1.4  1  PA             PA domain


Domain annotation for each model (and alignments):
>> TFR_dimer  Transferrin receptor-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.0   1.4e-38   8.2e-35       2     120 ..     782     906 ..     781     907 .. 0.95

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 1.4e-38
   TFR_dimer   2 sldpLeeaikkfkkaaeefdkwadkwed.v...ggaessllavrkrrkiNdklmrferafldpe...glpgrpwykHvvfgpslwtgyagatFPgirda 93 
                  +++L++a++ +k++a+ef++w+ +w++ v   +g+e++ l   +r ++Ndk++ fe+a+ld e   g+p+r+++kHvvfgp++w++y+ ++FP+ird+
  CCE28372.1 782 PFKELRDAAELVKSSADEFERWELEWDHsVltsNGFETNALGL-QRIRYNDKMAAFETALLDLEyggGIPNRTQFKHVVFGPQKWSTYEVSVFPAIRDT 879
                 599************************9736789*********.8*****************996545******************************* PP

   TFR_dimer  94 ieegdweeaqeqisivakaiesaaelL 120
                 ie gdwe+a++  s++a ++++aa +L
  CCE28372.1 880 IEVGDWELARHITSKIAAILRHAATTL 906
                 *************************99 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   5.2e-17   3.1e-13       1     180 [.     527     713 ..     527     719 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 5.2e-17
                    EEEEEESTTCE.SEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHH...GGCCSSEEEEEEEESSCSGSSHHHHHHHH...HHC..C CS
  Peptidase_M28   1 Nviatlegkat.devlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaa...sgsrpkrgvrflffdaEEagllGSkafak...akp..e 87 
                    Nv +++eg ++  + ++lg H D++++       GA+   sg+a+l+elar++     +g rp r+++f+ +da  +  +GS+ +++   ++p   
     CCE28372.1 527 NVYGRIEGMEQsRKSIILGNHRDTMAF-------GATQPHSGTAVLIELARIFGIlksRGWRPLRTIQFMSWDAAAYNTIGSTEYVEealDEPrsL 615
                    9******9999777************9.......9****************9766666999*************************8766555889 PP

                    CTTEEEEEEECS-SSSS--EEEHHHHHHCHHHHHHHHHHHHHTT-TTSC.CEEEEES....STT-STTHHHH.TTT--EEEECTSSS-TTTTSTTS CS
  Peptidase_M28  88 lkkiaavlnlDmvgsggkellfesgdkssselekelkalakpvgraaae.dpfders....grgrsDhspfl.kagvpvldlaetgfpevyHtprD 177
                    +++  a++nlD++ sg++      ++  +++l + l+++++p ++ + + +   +        g sD++pf+ +ag   +dl +tg +  + ++ D
     CCE28372.1 616 RENAYAYINLDAAISGREFQA-AGSPVLERALIRALERVVDPNSNVSLKhEWEGRHAklegLGGGSDFVPFQhAAGTSSMDLRFTGGGAPFGSSYD 710
                    99**********988877666.4555666666666666666555544332322222222225556******96777*********99999999999 PP

                    SGG CS
  Peptidase_M28 178 tld 180
                    +++
     CCE28372.1 711 NFN 713
                    886 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.7e-13     1e-09       1      81 [.     339     423 ..     339     430 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 1.7e-13
          PA   1 vtgplVyscfagygisadfe.....gvdvkGkivLvqr....tf..aeKarnAqaaGAagviivndgelgaatgasgnegepdgitiPavgv 81 
                 v gpl+   +a+yg+++df+      +d +  i+Lv r    ++  a K+++A+ aG ag+ii++d+   a++g  + e  p+g ++P  gv
  CCE28372.1 339 VRGPLI---YANYGSRDDFQklkdwDIDTRQAIALV-RhygtQTdeALKVKAAELAGFAGCIIYSDP---ADDGFVKGEVAPKGRYMPDDGV 423
                 689***...***************************.547652267******************987...4666666777888888886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (914 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 6137.30
//
Query:       CCE28373.1  [L=171]
Description: related to DNA damage response protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-11   44.7   0.0    1.3e-11   44.4   0.0    1.3  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   7.4e-16   1.3e-11       2      59 ..      66     124 ..      65     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 7.4e-16
                 HHHHTTTECTT..EEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCH CS
      Cyt-b5   2 leelskhngkn..dlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsek 59 
                 +++l  +ng++  ++++a+rg+V+Dv+ + +++ G+++++ ++aG+Da++ ++ ++++ +
  CCE28373.1  66 PRTLLPFNGEDgrSIFFAVRGRVFDVTPGRGFY-GPGGPYANFAGRDASRGLACHSFDRE 124
                 6677788988889********************.*****************998877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1303.93
//
Query:       CCE28374.1  [L=394]
Description: probable GTP-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-34  118.2   0.1    3.7e-34  116.8   0.1    1.8  1  YchF-GTPase_C   Protein of unknown function (DUF933)
    1.1e-16   60.9   0.0    3.4e-16   59.3   0.0    1.9  1  MMR_HSR1        50S ribosome-binding GTPase
    0.00046   19.8   0.0    0.00091   18.8   0.0    1.5  1  FeoB_N          Ferrous iron transport protein B
    0.00054   20.0   0.0     0.0014   18.7   0.0    1.7  1  TGS             TGS domain
  ------ inclusion threshold ------
      0.013   16.0   0.5        7.7    7.1   0.0    3.2  3  AAA_18          AAA domain
      0.029   14.5   1.9      0.089   13.0   1.9    1.9  1  PPAK            PPAK motif
      0.069   12.7   0.0       0.17   11.4   0.0    1.6  1  BetaGal_dom3    Beta-galactosidase, domain 3
       0.12   12.6   0.1       0.22   11.7   0.1    1.4  1  AKAP95          A-kinase anchoring protein 95 (AKAP95)
       0.12   12.4   0.0       0.42   10.7   0.0    1.9  1  AAA_14          AAA domain
       0.47   10.4   3.9          8    6.4   0.9    2.6  2  DNA_pol3_a_NII  DNA polymerase III polC-type N-terminus II
        8.8    6.8   8.0         18    5.8   0.0    2.8  3  AAA_23          AAA domain


Domain annotation for each model (and alignments):
>> YchF-GTPase_C  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.1   2.2e-37   3.7e-34       1      82 [.     307     388 ..     307     390 .. 0.98

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 2.2e-37
  YchF-GTPase_C   1 LitffTaGekevraWtikkgttapqaAgviHsDfekgFiraevikyedlvelgseaaakeagklrlegkdyvvqdgDiilfk 82 
                    L +ffT G +evr+Wti++gt+apqaAgviH+Dfek+Fi+a v++++ l+elg ea++k++gk+ ++gk+yvv+dgDi+l+k
     CCE28374.1 307 LGSFFTSGADEVRQWTIRTGTKAPQAAGVIHTDFEKTFIQAIVYNFDVLKELGDEAEVKSKGKMMTKGKEYVVEDGDILLIK 388
                    679****************************************************************************998 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   2.1e-19   3.4e-16       3      87 ..      24     135 ..      22     172 .. 0.76

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 2.1e-19
                 EEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE.................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke.................ielvDtpGliegaseekglgkaflalee.adlillv 82 
                 +ivG  NvGKStL++a+t++     +++p +T+d++e+rv + + +                 ++++D++Gl  g+s++ glg++fl++++ +d+i+ v
  CCE28374.1  24 GIVGLANVGKSTLFQAITKSdLGNPANFPYATIDPEEARVVVPDARfdwlcekykpksrvpanLTVYDIAGLTRGSSTGAGLGNSFLSHIRaVDAIFQV 122
                 8******************967899**************994432244555555555566666********8889****************55****** PP

                 EETT........T CS
    MMR_HSR1  83 vdas........e 87 
                 v++         e
  CCE28374.1 123 VRCFddaeiihiE 135
                 *988543333331 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   5.6e-07   0.00091       5      44 ..      25      65 ..      21      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.6e-07
                EEESTTSSHHHHHHHHHTTSE.EEEESTTSSSEEEEEEEEE CS
      FeoB_N  5 lvGnpnvGkttlfnaltgakq.kvgNwpGvtvekkegklkl 44
                +vG  nvGk+tlf a+t+++  + +N+p  t++ +e+++ +
  CCE28374.1 25 IVGLANVGKSTLFQAITKSDLgNPANFPYATIDPEEARVVV 65
                89****************9963789********99998765 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   8.4e-07    0.0014      13      58 ..     323     387 ..     311     389 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 8.4e-07
                 EETTB-HHHHHHHHSTTHHHHEEEEEECS...................EEEETTSBB-SSEEEEE CS
         TGS  13 lprgatveDfAykIhrslakkfiyAlVnG...................qrvgldhvLedgdvveI 58 
                 +++g+ + ++A  Ih+++ k+fi A+V                     +  g ++v+edgd++ I
  CCE28374.1 323 IRTGTKAPQAAGVIHTDFEKTFIQAIVYNfdvlkelgdeaevkskgkmMTKGKEYVVEDGDILLI 387
                 6788889999*************************************99*************988 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0047       7.7       3      22 ..      25      44 ..      24      90 .. 0.81
   2 ?    4.5   0.6     0.029        47      53     120 ..     155     242 ..     123     293 .. 0.77
   3 ?   -2.8   0.0       5.3   8.7e+03      58      82 ..     356     382 ..     339     391 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0047
      AAA_18  3 ltGtpGvGKttlakeLskrl 22
                + G + vGK+tl +++ k+ 
  CCE28374.1 25 IVGLANVGKSTLFQAITKSD 44
                89*************98874 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.029
      AAA_18  53 dedkldklldaleenss........aleegknlvidghlaeleseaakdikk............vvLtaspeelleRlekRgyeeaki 120
                 d+++++k+l++ ++  +        + ++++  vi+ +l +l + ++++++             + Lta+p + l  l++ +y  +k 
  CCE28374.1 155 DIEFVEKALENQKKKTRmggqslelKKAKAEQDVIEKILTWLQDGKDVRKGDwnpkevevinplFLLTAKPVVYLVNLSEKDYVRKKN 242
                 5556666666666666688888888888888999999999999998887777888999999998888888877777777777766664 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.3
      AAA_18  58 dklldaleenss..aleegknlvidgh 82 
                 ++l d+ e  s+   +++gk +v+++ 
  CCE28374.1 356 KELGDEAEVKSKgkMMTKGKEYVVEDG 382
                 333333333333666777777777765 PP

>> PPAK  PPAK motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.9   5.5e-05     0.089       9      19 ..       3      13 ..       2      15 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.5e-05
        PPAK  9 PKKaVpEEKvp 19
                PKK+V+EEK+p
  CCE28374.1  3 PKKVVQEEKIP 13
                **********9 PP

>> BetaGal_dom3  Beta-galactosidase, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.17      34      72 ..     130     169 ..     123     173 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
  BetaGal_dom3  34 stLaltGDlnatttlevi.apssvktltwNgkklettktk 72 
                   + ++++GD+n t +l++i     +k +++  k+le +k+k
    CCE28374.1 130 EIIHIEGDVNPTRDLDIIsEELRLKDIEFVEKALENQKKK 169
                   5689**************8889************999887 PP

>> AKAP95  A-kinase anchoring protein 95 (AKAP95)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00014      0.22      10      79 ..     125     191 ..     120     203 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
      AKAP95  10 tfeekeiekHleskfH.ketlkyiqtkldkkvveFleeylvnkfkkteerrqqlkeaeeavkkiekdvleg 79 
                  f++ ei  H+e+++     l+ i+++l  k +eF+e  l+n+ kkt    q+l+ ++++++   +dv+e 
  CCE28374.1 125 CFDDAEI-IHIEGDVNpTRDLDIISEELRLKDIEFVEKALENQKKKTRMGGQSLELKKAKAE---QDVIEK 191
                 5666666.47777765245699**************************99999877766543...455554 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00026      0.42       7      44 ..      25      62 ..      20      85 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
      AAA_14  7 itGaRrvGKTtllkqlikellvkkesilyinldderdk 44
                i+G+  vGK+tl + + k+ l ++ ++ y ++d e+ +
  CCE28374.1 25 IVGLANVGKSTLFQAITKSDLGNPANFPYATIDPEEAR 62
                89999*******9999999999999**99999987765 PP

>> DNA_pol3_a_NII  DNA polymerase III polC-type N-terminus II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.9    0.0049         8      70     109 ..     132     171 ..     125     192 .. 0.92
   2 ?    4.0   0.1     0.026        43      40     104 ..     234     294 ..     226     303 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0049
  DNA_pol3_a_NII  70 vevdedesseeeieefeeqkeeeeekaikeaieakekkea 109
                     ++++ d++ +++++ + e+ +  +++++++a+e ++kk  
      CCE28374.1 132 IHIEGDVNPTRDLDIISEELRLKDIEFVEKALENQKKKTR 171
                     788899999***************************9976 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.026
  DNA_pol3_a_NII  40 eiiaealkkkkldklleeyikfgFgklkidvevdedesseeeieefeeqkeeeeekaikeaieak 104
                     e  + + k+k+l+k+ e ++++  g+  i + v +    ee +  +e++ e  ee+++  a   +
      CCE28374.1 234 EKDYVRKKNKHLPKIVEWIKENASGDPVIPISVSY----EERLTRYETEAESLEEQKNVGAESVI 294
                     55566789*****************8888888888....45578899988888888877665555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.011        18      23      40 ..      24      41 ..       7      47 .. 0.84
   2 ?    0.2   5.3      0.56   9.2e+02     141     175 ..     129     192 ..     105     287 .. 0.69
   3 ?   -0.8   0.1       1.1   1.8e+03      69     107 ..     243     283 ..     230     318 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.011
      AAA_23 23 lItGpNGaGKTTildAik 40
                 I+G    GK+T+++Ai+
  CCE28374.1 24 GIVGLANVGKSTLFQAIT 41
                58899999*********7 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.56
      AAA_23 141 er.............................feefelkdkkerleelekeleeledekkllekl 175
                  +                             ++ +e+++kk r+   + el+++++e++ +ek 
  CCE28374.1 129 AEiihiegdvnptrdldiiseelrlkdiefvEKALENQKKKTRMGGQSLELKKAKAEQDVIEKI 192
                 4455555555555555555444455555555555566777778888888888888888888776 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.1
      AAA_23  69 gkvkayveltfenkdgry....trsiererelskkkgkttkka 107
                 ++ +++ve   en +g+      +s e++ +++++++++   +
  CCE28374.1 243 KHLPKIVEWIKENASGDPvipiSVSYEERLTRYETEAESL--E 283
                 4556666666666666544432222222222222222222..2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2909.38
//
Query:       CCE28375.1  [L=247]
Description: uncharacterized protein CPUR_01850 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-34  116.7   0.0      1e-33  116.3   0.0    1.1  1  Peptidase_C97  PPPDE putative peptidase domain
  ------ inclusion threshold ------
      0.013   15.8   0.1      0.022   15.0   0.1    1.3  1  LRAT           Lecithin retinol acyltransferase
       0.03   14.7   0.0      0.055   13.8   0.0    1.4  1  DUF778         Protein of unknown function (DUF778)
       0.15   11.7   0.0       0.32   10.7   0.0    1.5  1  G2BR           E3 gp78 Ube2g2-binding region (G2BR)


Domain annotation for each model (and alignments):
>> Peptidase_C97  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0   2.2e-37     1e-33       2     146 ..      26     162 ..      25     167 .. 0.93

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 2.2e-37
                    EEEEEEEETT...TTHHHHHHHHHHSS-----EEEEEEETTEEEE--T......T-SEEESTT-STT-.S-SEEEEEEEE---HHHHHHHHHHHHT CS
  Peptidase_C97   2 kvelivyDlsldkkglarrvyptllGkkieGiyhtgvevygleyafggkekee.gGifelkpgttsegakpresieigeTevteeevraileelss 96 
                    +++++vyDl ++ +    ++ ++  G    +  h+gv+++g+eya+gg++k+  +G++++kp+   +g ++r+++ +g    t+ee++a l++ s+
     CCE28375.1  26 EIKIHVYDLLPPGR---LSAALWAFGA---SLLHSGVVINGKEYAYGGHDKRGtTGVYWTKPKLEPPGGTFRCELLHGFALATQEEIDAALRSASE 115
                    799*******6555...66788899*8...99********************99****************************************** PP

                    T--GGG-BTTTB-HHHHHHHHHHHHHS----HHHHTHHHHHHTSHHHHHH CS
  Peptidase_C97  97 eytgdkYnLiskNCnhFtdelvdfLtgkkiPewinrlarivlstptvkll 146
                    e+ g++YnL++kNCnhFt  l+++Ltg++ P w+nr a+i+++ p   ++
     CCE28375.1 116 EFLGTSYNLLTKNCNHFTSYLCQKLTGNPGPGWLNRAASIGVALP---CI 162
                    *****************************************9544...44 PP

>> LRAT  Lecithin retinol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1     5e-06     0.022      96     122 ..     111     137 ..      88     141 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5e-06
                 HHHHH.HTT-E-SCGHHCHHHHHHHHHH CS
        LRAT  96 qrAee.lvGeveYsllsnNCEhFvtyck 122
                 + A e ++G ++Y+ll++NC hF +y++
  CCE28375.1 111 RSASEeFLG-TSYNLLTKNCNHFTSYLC 137
                 555552444.79************9975 PP

>> DUF778  Protein of unknown function (DUF778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.2e-05     0.055     121     161 ..     103     135 ..      91     151 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
      DUF778 121 knsyddadgirsaPdlsssseefqgeeynLltanchsfval 161
                 +++ d+a        l+s+seef g++ynLlt+nc  f + 
  CCE28375.1 103 QEEIDAA--------LRSASEEFLGTSYNLLTKNCNHFTSY 135
                 5555666........99*******************99865 PP

>> G2BR  E3 gp78 Ube2g2-binding region (G2BR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.1e-05      0.32       2      22 ..     188     208 ..     187     208 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.1e-05
        G2BR   2 AdERQRMLvqRKEdLLqqARR 22 
                 AdE  RML q K  LL  AR+
  CCE28375.1 188 ADESSRMLSQSKSHLLPGARK 208
                 9******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1952.04
//
Query:       CCE28376.1  [L=157]
Description: related to ribosomal protein YmS18,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-06   28.1   0.0    2.9e-06   27.7   0.0    1.2  1  Ribosomal_S11  Ribosomal protein S11


Domain annotation for each model (and alignments):
>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.6e-10   2.9e-06       5     110 .]      42     156 ..      39     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.6e-10
  Ribosomal_S11   5 iqasfnntiititdlkGaevlvksaGglgvkasrkssPyaaqlaaekaaekvld....kGikavevkvkgpGpGreaalralara.G..l..kigr 91 
                    +++   nt it t  + + +l+ s+G lg+++sr+ +  +a   ++ + e++l+    k ++++e+  +g G Grea ++ +    G  +  ki r
     CCE28376.1  42 VYSHKHNTHITFTKPNREPILSMSCGNLGYRKSRRGTFDSAYSLTKYVLERILHtkwiKDMNKLELIFRGFGQGREAVIKVMMSPeGkiMreKIIR 137
                    678889****************************9887777777766666665422227899******************9876414221225778 PP

  Ribosomal_S11  92 iedvtPiPhdgirrpkkrr 110
                    + d t i   g+r++k rr
     CCE28376.1 138 VADSTRIKYAGTRSRKPRR 156
                    99************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1200.55
//
Query:       CCE28377.1  [L=524]
Description: related to mitochondrial import protein MPI1 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-34  117.9   0.1    1.8e-33  115.7   0.0    2.0  2  Tim44     Tim44-like domain


Domain annotation for each model (and alignments):
>> Tim44  Tim44-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.066   1.2e+03       3      31 ..     166     194 ..     164     208 .. 0.83
   2 !  115.7   0.0     1e-37   1.8e-33       2     147 .]     365     518 ..     364     518 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.066
                 HHHHHHHHH-TT--HHHHHHHHHHTHHHH CS
       Tim44   3 salaaikqrdpsFdkeeFleeakeayepi 31 
                 ++ ++i ++  +F+++e ++ a+eaye+ 
  CCE28377.1 166 ESTKQIGAAANQFTESESVRRAREAYEKS 194
                 56789999999***************975 PP

  == domain 2  score: 115.7 bits;  conditional E-value: 1e-37
                 HHHHHHHHHH-TT--HHHHHHHHHHTHHH.HHHHHHHT-HHHHHHHB-HHHHHHHHHHHHHHHHTT-EE--EEEEEEEEEEEEEEEE..TTEEEEEEEE CS
       Tim44   2 asalaaikqrdpsFdkeeFleeakeayep.ileayakgDletLrkllteevyeefkaeikerakqgltldaellgirevdlkeakie..gdtavltvrf 97 
                 a ++++++ +dp F++e Fl+e++e++ p +l+ay+kgD etL+ +l+ + y++++a  k++ ++g ++d ++l+ir+vd+ + k+   g+ +++++++
  CCE28377.1 365 ALVIKKFRTMDPAFQVEPFLQELREYILPeVLDAYVKGDTETLQLWLSAAQYSVYEALTKQYLQAGMKSDGRILDIRNVDIIRSKLLdpGEIPIFIITC 463
                 6789***********************************************************************************9*********** PP

                 EEEEE-E.E-TTS.-EEEE-TT--EEEEEEEEEEE-...-S-G.GG-EEEEEEEE CS
       Tim44  98 rtqqisv.tddatGevveGdedkvvevrevwtfeRd...lgse.dpnWrLveiqa 147
                 rtq+++v ++++t e+++G ed+v+ v++++ ++R    ++++ +++WrL+e+q+
  CCE28377.1 464 RTQEVHVyRNAKTNELAAGMEDRVQLVTYAIGITRVpedVQNPeTRGWRLIEMQK 518
                 *******999999***********************99988888********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1455  (0.0811534); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 3582.63
//
Query:       CCE28378.1  [L=310]
Description: probable aldehyde reductase 6 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.8e-120  400.5   0.1   3.4e-120  400.2   0.1    1.1  1  MIOX      Myo-inositol oxygenase
  ------ inclusion threshold ------
      0.095   12.9   0.1          2    8.6   0.0    2.5  3  HD        HD domain
       0.12   12.3   0.9        1.7    8.6   0.1    2.4  2  NOG1_N    NOG1 N-terminal helical domain
       0.14   12.4   0.0       0.22   11.8   0.0    1.4  1  UBD       Ubiquitin-binding domain


Domain annotation for each model (and alignments):
>> MIOX  Myo-inositol oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.2   0.1  7.7e-124  3.4e-120       1     249 []      58     310 .]      58     310 .] 0.96

  Alignments for each domain:
  == domain 1  score: 400.2 bits;  conditional E-value: 7.7e-124
        MIOX   1 kdrvkefykeqhtkqtvdfvkkkrkefkkkk..rakmtiwealellnelvdesdPdvdlsqiehllqtaeairkdypdkdWlqltglihdlGkvlllf. 96 
                 +drvk+fy+eqh+kqtv+++ ++r++f++    r +mt+w+a+e+l++lvd sdPd++lsqi+hllq+aeair+d ++++W+qltglihdlGk++ +f 
  CCE28378.1  58 CDRVKDFYREQHEKQTVAYNLAARNRFHSAAriRPRMTVWQAMEKLDTLVDVSDPDTELSQIQHLLQSAEAIRRD-GKPRWMQLTGLIHDLGKLMFFFp 155
                 68**************************76611568***************************************.*********************96 PP

        MIOX  97 ..kaepqWavvGdtfpvGckfsesivykesfkenpdlkdekyntklGiykencGldnvllswghdeylykvlkenkstlpeealamiryhsfypwhkeg 193
                   ++++qW+vvGdtfpvGc+f+++iv +++f++npd++ ++++tk+Giy+++cGldnv+lswghdeyly+v+k  +stlp+ealamiryhsfy+wh+eg
  CCE28378.1 156 elGTNGQWDVVGDTFPVGCAFDKRIVLPDTFAANPDTNVPTFSTKFGIYTPGCGLDNVMLSWGHDEYLYHVVK-GQSTLPDEALAMIRYHSFYSWHREG 253
                 66789********************************************************************.89*********************** PP

        MIOX 194 aykhlmnekdeellkavkafnkydlyskseekpdveelkPyyqelidkylpe.klkw 249
                 ay++lm+ekd+++l+avkafn+ydlysks++ p+veelkPyy elid+++p+ +++w
  CCE28378.1 254 AYRELMTEKDHAMLEAVKAFNPYDLYSKSDDLPSVEELKPYYLELIDEFFPQkVVEW 310
                 ***************************************************955666 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.2   5.6e+03      80      98 ..      74      92 ..      51     111 .. 0.49
   2 ?    8.6   0.0   0.00046         2      18      42 ..     128     152 ..     117     162 .. 0.77
   3 ?    1.2   0.0      0.09     4e+02      58      93 ..     218     249 ..     209     291 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
                HHHHHHHTTCCHHHHHHHH CS
          HD 80 dvaklirehheswegkkrp 98
                 +++l++++++ +  + rp
  CCE28378.1 74 VAYNLAARNRFHSAARIRP 92
                3444444444444433333 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00046
                 HHHHHHHHHHHHHHHHHTTTTHHHH CS
          HD  18 dlgeeedrellllaaLlHDiGkgpf 42 
                  + ++ ++ + +l +L+HD+Gk  f
  CCE28378.1 128 AIRRDGKPRWMQLTGLIHDLGKLMF 152
                 3333578999************876 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH CS
          HD  58 aHekvgaeilrevekrlgldledvaklirehheswe 93 
                 +H ++ + +++    ++    ++++++ir+h++ + 
  CCE28378.1 218 GHDEYLYHVVKGQSTLP----DEALAMIRYHSFYSW 249
                 57888888888887777....469999999987654 PP

>> NOG1_N  NOG1 N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.045     2e+02      76     106 ..     101     131 ..      40     134 .. 0.81
   2 ?    8.6   0.1   0.00037       1.7      56      79 ..     277     300 ..     252     305 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.045
      NOG1_N  76 elldvlvdkdelkksLaqvkwarklirkigk 106
                 e ld+lvd++     L+q++ + ++++ i++
  CCE28378.1 101 EKLDTLVDVSDPDTELSQIQHLLQSAEAIRR 131
                 6689999999999999999999999999987 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00037
      NOG1_N  56 kLeeivkkfPnldelhpFyrelld 79 
                  L++  ++ P+++el p+y el+d
  CCE28378.1 277 DLYSKSDDLPSVEELKPYYLELID 300
                 466777899*************98 PP

>> UBD  Ubiquitin-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     5e-05      0.22      19      74 ..      74     133 ..      58     170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5e-05
         UBD  19 traqlerereeFfdT.rvtgrkeiWdalkaalevleedd....lataqaildaaeitlptg 74 
                  + +l   r+ F +  r+  r  +W+a++++ ++++ +d    l++ q++l++ae +  +g
  CCE28378.1  74 VAYNL-AARNRFHSAaRIRPRMTVWQAMEKLDTLVDVSDpdteLSQIQHLLQSAEAIRRDG 133
                 34444.5688999888*************999888655555569999*******9876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2239.58
//
Query:       CCE28379.1  [L=657]
Description: related to vacuolar membrane protein HMT1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-33  114.8   0.0    7.4e-33  114.0   0.0    1.4  1  ABC_tran      ABC transporter
    5.6e-15   55.7   2.9    7.6e-15   55.3   2.9    1.1  1  ABC_membrane  ABC transporter transmembrane region
    6.6e-05   22.4   0.0    0.00073   19.0   0.0    1.9  2  SMC_N         RecF/RecN/SMC N terminal domain
     0.0025   17.7   0.0     0.0052   16.7   0.0    1.6  1  RsgA_GTPase   RsgA GTPase
     0.0028   17.5   0.1     0.0066   16.3   0.1    1.5  1  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0059   16.4   0.0     0.0084   15.9   0.0    1.1  1  AAA_15        AAA ATPase domain
     0.0094   15.2   0.1      0.021   14.1   0.1    1.5  1  Zeta_toxin    Zeta toxin
  ------ inclusion threshold ------
      0.016   14.8   0.1      0.031   13.9   0.1    1.5  1  PAM2          Ataxin-2 C-terminal region
      0.021   14.6   0.2      0.052   13.3   0.2    1.6  1  AAA_29        P-loop containing region of AAA domain
      0.033   13.6   0.2       0.56    9.6   0.0    2.2  2  PhoH          PhoH-like protein
      0.055   13.7   0.1       0.29   11.4   0.1    2.1  1  AAA_22        AAA domain
      0.059   12.9   0.0       0.15   11.6   0.0    1.7  1  AAA_25        AAA domain
      0.073   13.2   0.0       0.15   12.1   0.0    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
      0.089   13.0   0.1       0.51   10.6   0.1    2.1  2  AAA_28        AAA domain
       0.12   12.7   0.1       0.41   11.0   0.1    2.0  1  AAA_16        AAA ATPase domain
       0.17   11.9   0.0        4.3    7.3   0.0    2.6  3  AAA_5         AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   0.0   6.6e-36   7.4e-33       2     137 .]     311     459 ..     310     459 .. 0.86

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 6.6e-36
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTC......HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxx......xxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdee......iek 87 
                 + +sl++ +g++va+vG +GaGKStLlkll + ++ t G+i++dg+d+++ +l slr +ig++pq+p lf+++ + +n       + dee      ++ 
  CCE28379.1 311 NGISLDIPAGQTVAFVGATGAGKSTLLKLLDRFYDVTDGTITIDGQDIRDVDLFSLRDRIGIVPQNPILFDDT-IMNNvrygritATDEEvfdacrAAS 408
                 789**********************************************************************.777779***9944444333333333 PP

                 HHHHSTTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++      +         +t v++++ +LSgG+ qrva+ara+l++p+++llDE+t+
  CCE28379.1 409 IH------DkiegfthGYKTQVGERGVKLSGGELQRVAIARAILRRPNIVLLDEATS 459
                 33......333333336699999999*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   2.9   6.8e-18   7.6e-15      44     274 .]      18     248 ..       4     248 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 6.8e-18
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH.H CS
  ABC_membrane  44 sllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfy.l 139
                     + l l+  ++ ++ll+++l++ +  + + ++ r ++ ++++++  f+d++s+++++  + n  + +++++ + l+  +  l+ +++++i++   +
    CCE28379.1  18 TFAALRLASSECGIELLRQWLWIPVRYYSHDAMTRAAYSHMIHLSADFHDSKSSSDMMVAI-NGGNAVSNAVERVLLRALPMLVDMCIAIIYLSAtF 113
                   55556667777888999********************************************.58888****************9999998887766* PP

                   SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 140 gwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgl 236
                   g +  ++++a+  ++++++  +   +k +++   +a+ +   + +  l+g++tV af+   y+ ++  +a+++   +  k+++++ ++i++++++ +
    CCE28379.1 114 GSYEGFITMATGTIFFIMAGRLVAESKAASRLRVNALYQEHYIRQSGLQGWQTVSAFNQIGYEDNRHADAVTNRWLREQKYILTWYVSIAFQTMVLT 210
                   **************************************99999999*************************************************** PP

                   HHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 237 lsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                   +  ++ ++++++ + sg+ ++g++ ++l+++++l+ +l
    CCE28379.1 211 CGLLASAFLAVYRIRSGKATSGQFAMLLMYWSQLTSPL 248
                   **********************************9986 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.25   2.8e+02      26      42 ..     322     338 ..     302     344 .. 0.81
   2 !   19.0   0.0   6.5e-07   0.00073     108     212 ..     348     502 ..     338     508 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.25
                 EEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlld 42 
                   a vG+ G+GKs ll 
  CCE28379.1 322 TVAFVGATGAGKSTLLK 338
                 56789********9875 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 6.5e-07
                 EEEEEETTEEE-HHHHHHHHHCTT-STT......................................................CS-HHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................................xxxxxxxxxxxxxxxxx RF
       SMC_N 108 eseykingkevtkkevsellesagiske......................................................lLSgGektLvalaLlfA 152
                 + +++i+g++++  ++ +l  + gi ++                                                       LSgGe + va+a   A
  CCE28379.1 348 DGTITIDGQDIRDVDLFSLRDRIGIVPQnpilfddtimnnvrygritatdeevfdacraasihdkiegfthgyktqvgergvKLSGGELQRVAIA--RA 444
                 45688999999999999999999999999999999999999999999999999999999999999****************9******8877765..34 PP

                 HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 153 iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvt 212
                 i   ++  ++llDe  +a D    +k+   +++  +    +v+++r  ++ +ad++v v 
  CCE28379.1 445 I--LRRPNIVLLDEATSAVDTDTEQKIQLSFRRLCQGRTTFVVAHRLSTIMNADRIVVVE 502
                 5..5667799*********************************************99875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.6e-06    0.0052      98     122 ..     319     343 ..     278     411 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.6e-06
                  TTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpe 122
                  +++t+++vG +G+GKStL++ l+  
   CCE28379.1 319 AGQTVAFVGATGAGKSTLLKLLDRF 343
                  459****************999765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   5.8e-06    0.0066       3      48 ..     324     364 ..     323     393 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.8e-06
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipsl 48 
                 +++G+ g+GKS+LL++ld + ++      ++++  +g++ir+++ +
  CCE28379.1 324 AFVGATGAGKSTLLKLLDRFYDV-----TDGTITIDGQDIRDVDLF 364
                 68****************98765.....333333344444444433 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.5e-06    0.0084      21      69 ..     319     362 ..     308     398 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.5e-06
      AAA_15  21 lseeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleife 69 
                     +  ++G+ ++GKS++l++ld F + +    + +i+i+ +d+++ +
  CCE28379.1 319 AGQ-TVAFVGATGAGKSTLLKLLDRFYDVT----DGTITIDGQDIRDVD 362
                 344.889*********************99....899999999998874 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.8e-05     0.021      21      56 ..     325     360 ..     319     362 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
  Zeta_toxin  21 lgGqpGAGKselaellkdelerqgnvvrldpDdlRe 56 
                  +G++GAGKs+l++ll++  + +++ +++d+ d+R 
  CCE28379.1 325 FVGATGAGKSTLLKLLDRFYDVTDGTITIDGQDIRD 360
                 679******************************996 PP

>> PAM2  Ataxin-2 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.8e-05     0.031       4      17 ..     598     611 ..     595     612 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.8e-05
                 --SSTTSS----TT CS
        PAM2   4 SkLNPnAkEFVPsf 17 
                 S+LNP A+ FVP++
  CCE28379.1 598 STLNPVAPDFVPRS 611
                 9************8 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   4.6e-05     0.052      17      39 ..     315     337 ..     309     340 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.6e-05
      AAA_29  17 ieidlkg.atlltGpsGsGKSTll 39 
                 ++i  +g ++ ++G++G+GKSTll
  CCE28379.1 315 LDIP-AGqTVAFVGATGAGKSTLL 337
                 5565.455999************8 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.15   1.7e+02       7      35 ..     304     336 ..     298     340 .. 0.81
   2 ?    9.6   0.0    0.0005      0.56      44     108 ..     436     501 ..     429     506 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.15
                 HHHHHHHHHHH....H-SEEEEE--TTSSTTHH CS
        PhoH   7 keQkeylealk....kndivfaiGpaGtGKtyl 35 
                  +Qk++++ ++    + + v  +G +G+GK+ l
  CCE28379.1 304 DGQKRIINGISldipAGQTVAFVGATGAGKSTL 336
                 5788888888877777889999********876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0005
                 HHTTS-SEEEEEE-S--T.T----SS---------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEE CS
        PhoH  44 lkkkkvkriiltrpavea.geelGflpgdleekvdpylrplydaLkdllgaekvekllekgkieva 108
                 l++  + r il rp++   +e   ++++d+e+k++  +r l +  ++++ a+++++++++++i v+
  CCE28379.1 436 LQRVAIARAILRRPNIVLlDEATSAVDTDTEQKIQLSFRRLCQGRTTFVVAHRLSTIMNADRIVVV 501
                 566678999*****99766******************************************99887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00026      0.29       8      32 ..     323     347 ..     319     489 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00026
      AAA_22   8 lvvtGesGtGKTtllrrlleqldee 32 
                 ++ +G +G+GK+tll+ l + +d  
  CCE28379.1 323 VAFVGATGAGKSTLLKLLDRFYDVT 347
                 5789**************9999764 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00013      0.15      22      50 ..     306     337 ..     284     350 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
      AAA_25  22 rrwlvkg...llpagelallaGapgtGKttla 50 
                 ++ ++ g    +pag +++++Ga+g+GK+tl+
  CCE28379.1 306 QKRIINGislDIPAGQTVAFVGATGAGKSTLL 337
                 555555544458******************97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014      0.15       2      19 ..     323     340 ..     322     377 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
                 EEEEESTTSSHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinal 19 
                 va+vG + +GKStL++ l
  CCE28379.1 323 VAFVGATGAGKSTLLKLL 340
                 9*************9876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00045      0.51       2      21 ..     323     342 ..     322     358 .. 0.86
   2 ?   -1.0   0.0       1.6   1.8e+03      73     102 ..     375     403 ..     366     413 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00045
      AAA_28   2 ivitGgestGKTtlleaLaa 21 
                 ++++G+ ++GK+tll+ L +
  CCE28379.1 323 VAFVGATGAGKSTLLKLLDR 342
                 89**************9974 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
      AAA_28  73 nkvlfcDrglldtlaYarayggeaeaelea 102
                 ++ +++D  +++++ Y r    + e+ ++a
  CCE28379.1 375 QNPILFDDTIMNNVRYGRITATD-EEVFDA 403
                 57799************998888.555544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00037      0.41      24      59 ..     320     356 ..     311     486 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00037
      AAA_16  24 pelvllsGesGvGKsslvrellralekd.ggiflrgk 59 
                 ++ v ++G+ G GKs+l++ l r +  + g i++ g+
  CCE28379.1 320 GQTVAFVGATGAGKSTLLKLLDRFYDVTdGTITIDGQ 356
                 36799**************999865544235555555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0039       4.3       3      73 ..     324     398 ..     322     409 .. 0.75
   2 ?   -1.9   0.0       2.8   3.1e+03      60      77 ..     442     460 ..     422     471 .. 0.69
   3 ?    1.0   0.0      0.35   3.9e+02      81     109 ..     485     513 ..     479     530 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0039
                 EEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--............--------G-SEEEEES CS
       AAA_5   3 lLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreik...ngttslvdsplvraaregeilvlDE 73 
                   vG++G gKs+l + l +++  ++  ++    +d++  dl+  r+     +++  l d  +++++r g+i+  DE
  CCE28379.1 324 AFVGATGAGKSTLLKLLDRFYdvTDG-TITIDGQDIRDVDLFSLRDRIgivPQNPILFDDTIMNNVRYGRITATDE 398
                 579*****************974333.3444446788888888777556778888888888888888888876554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.8
                 -----.G-SEEEEESGGG- CS
       AAA_5  60 vraar.egeilvlDEvera 77 
                  ra+  ++ i++lDE + a
  CCE28379.1 442 ARAILrRPNIVLLDEATSA 460
                 3333248999999998865 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.35
                 HHHHHHHHHHSSEEE..-SSSEEE---.. CS
       AAA_5  81 vlnsLlslleerrllleeggelvkakndd 109
                 v+ +L ++++ +r+ + egg++v   n d
  CCE28379.1 485 VAHRLSTIMNADRIVVVEGGQVVEQGNHD 513
                 7889******************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 4365.35
//
Query:       CCE28380.1  [L=485]
Description: related to protein phosphatases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-25   87.5   1.9    7.2e-25   86.5   1.9    1.5  1  SGTA_dimer   Homodimerisation domain of SGTA
      2e-15   55.9   0.2    1.5e-05   24.6   0.0    3.3  3  TPR_1        Tetratricopeptide repeat
      5e-14   51.2   1.0    8.7e-05   22.4   0.0    3.4  3  TPR_2        Tetratricopeptide repeat
    7.7e-09   35.1   0.4    0.00036   20.2   0.1    3.1  3  TPR_11       TPR repeat
    7.9e-07   29.6   7.3     0.0014   19.3   2.8    2.6  3  TPR_16       Tetratricopeptide repeat
    1.5e-06   28.2   0.1     0.0017   18.6   0.0    3.0  2  TPR_17       Tetratricopeptide repeat
    5.1e-06   26.9   0.6     0.0091   16.5   0.1    2.6  2  TPR_19       Tetratricopeptide repeat
    5.2e-06   26.8   2.9       0.44   11.5   1.8    3.5  3  TPR_14       Tetratricopeptide repeat
    7.6e-06   25.7   1.4       0.95    9.8   0.0    4.1  4  TPR_8        Tetratricopeptide repeat
    0.00017   21.8   1.5     0.0022   18.2   0.2    2.5  2  TPR_12       Tetratricopeptide repeat
    0.00055   20.0   0.3      0.005   16.9   0.2    2.2  2  TPR_9        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.3   1.8      0.016   14.8   1.8    1.2  1  GHBP         Growth hormone receptor binding
      0.016   15.2   0.0          3    8.1   0.0    2.9  3  TPR_7        Tetratricopeptide repeat
      0.032   14.1   8.6      0.049   13.6   3.4    2.4  2  STI1         STI1 domain
      0.069   12.9   0.2       0.16   11.7   0.2    1.6  1  XPC-binding  XPC-binding domain
       0.09   12.7   2.3       0.66    9.9   0.3    2.7  3  TPR_10       Tetratricopeptide repeat
       0.13   12.7   0.9       0.35   11.3   0.7    1.6  1  BTAD         Bacterial transcriptional activator domain
       0.16   12.7   4.5        2.7    8.8   0.4    3.1  2  TPR_6        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SGTA_dimer  Homodimerisation domain of SGTA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   1.9   7.3e-28   7.2e-25       1      66 [.     126     190 ..     126     191 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 7.3e-28
  SGTA_dimer   1 skkrlalaIidFLstslkdgtvseDdaESleVAiqCIaeaFevdkedkaavkkakfggqsLleile 66 
                 sk+rlalaI+dFLsts++dgt++++d++S++VA++CIae+F+vd +dk+avk+a+ g+qsLl+i++
  CCE28380.1 126 SKQRLALAICDFLSTSATDGTLTAEDKDSVDVAVNCIAECFKVDANDKEAVKAAV-GSQSLLSIYS 190
                 69*************************************************9666.*********8 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.5e-08   1.5e-05       1      34 []     229     262 ..     229     262 .. 0.96
   2 !   10.3   0.0   0.00051      0.51       3      34 .]     265     296 ..     263     296 .. 0.94
   3 !   17.6   0.0   2.5e-06    0.0024       2      31 ..     298     327 ..     297     329 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.5e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 a+ l+ +Gna + +++y  A+++y +AL++ P+n
  CCE28380.1 229 AEGLKSKGNAAMAQKDYPVAIDFYTQALKIHPSN 262
                 78999***************************98 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00051
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                  l n+++a+   +++  A  + e A+ ++P++
  CCE28380.1 265 FLSNRAAAHSAAKDHASARTDAEAAVAVDPSY 296
                 689***************************97 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 2.5e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALeln 31 
                 ka+ +lG+a f +g+ + A e+y++ +e++
  CCE28380.1 298 KAWSRLGLARFAMGDAKGAMEAYSQGIEHE 327
                 7**************************975 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   8.7e-08   8.7e-05       1      34 []     229     262 ..     229     262 .. 0.94
   2 !   11.6   0.1   0.00024      0.24       3      33 ..     265     295 ..     263     296 .. 0.93
   3 !   14.4   0.0   3.2e-05     0.032       2      31 ..     298     327 ..     297     329 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 8.7e-08
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 ae+l   G+a+++++dy  A++++ +Al++ P n
  CCE28380.1 229 AEGLKSKGNAAMAQKDYPVAIDFYTQALKIHPSN 262
                 6788899*************************87 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00024
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                  l n++ a+ +++d++ A+ + e+A++ dP 
  CCE28380.1 265 FLSNRAAAHSAAKDHASARTDAEAAVAVDPS 295
                 689**************************97 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 3.2e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleld 31 
                 +a+ +lGla +++gd + A ea+ + +e++
  CCE28380.1 298 KAWSRLGLARFAMGDAKGAMEAYSQGIEHE 327
                 69***********************99975 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   3.6e-07   0.00036       1      38 [.     236     273 ..     236     276 .. 0.96
   2 !   10.7   0.0   0.00031      0.31      19      42 .]     288     311 ..     281     311 .. 0.94
   3 !    6.4   0.0     0.007       6.9       1      22 [.     304     325 ..     304     326 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.6e-07
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlay 38 
                 G+a ++q +y+ Ai  Y +Alk+ P+na +++n+++a+
  CCE28380.1 236 GNAAMAQKDYPVAIDFYTQALKIHPSNAVFLSNRAAAH 273
                 9999*******************************998 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00031
      TPR_11  19 kAlkldPdnaeayynLGlayykqG 42 
                 +A++ dP++  a++ LGla +++G
  CCE28380.1 288 AAVAVDPSYTKAWSRLGLARFAMG 311
                 79*******************998 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.007
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G a ++ G+ ++A+eaY++ ++
  CCE28380.1 304 GLARFAMGDAKGAMEAYSQGIE 325
                 7899***************986 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00022      0.21      33      67 ..     228     262 ..     213     263 .. 0.75
   2 !   19.3   2.8   1.4e-06    0.0014       3      57 ..     235     287 ..     233     289 .. 0.92
   3 !   15.9   5.4   1.6e-05     0.016       3      58 ..     269     321 ..     267     327 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00022
      TPR_16  33 aaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                  ae l  +g+aa +q++++ A+++y  al+  p++
  CCE28380.1 228 EAEGLKSKGNAAMAQKDYPVAIDFYTQALKIHPSN 262
                 55666678999999999999999999999888876 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.4e-06
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.aly 57 
                 +++aa++++dy+ A+  +++alk +   P +a +l +++ a+ +++++a A+ ++ 
  CCE28380.1 235 KGNAAMAQKDYPVAIDFYTQALKIH---PSNAVFLSNRAAAHSAAKDHASARtDAE 287
                 699**********************...99999******************96654 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 1.6e-05
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                 +a a+ +a+d + A+  +eaa++ d   P    A+  lg+a+++ g+ ++A ++y 
  CCE28380.1 269 RAAAHSAAKDHASARTDAEAAVAVD---PSYTKAWSRLGLARFAMGDAKGAMEAYS 321
                 6788899******************...************************9886 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.7e-06    0.0017       1      33 [.     251     283 ..     251     284 .. 0.95
   2 ?    6.5   0.0     0.012        12       3      32 ..     287     316 ..     285     319 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.7e-06
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 +y++al+++P+na+++ n+A +++ ++d++ Ar
  CCE28380.1 251 FYTQALKIHPSNAVFLSNRAAAHSAAKDHASAR 283
                 69**************************99887 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.012
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtA 32 
                 + a++ dP++ +a+  L+ +    Gd + A
  CCE28380.1 287 EAAVAVDPSYTKAWSRLGLARFAMGDAKGA 316
                 78999***************9999998876 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   9.1e-06    0.0091       1      45 [.     239     283 ..     239     284 .. 0.95
   2 !   12.5   0.1   0.00016      0.15       3      57 ..     275     329 ..     273     337 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.1e-06
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 ++a++dy  A+++++qal+  p na  + + A a+ a+++ + A+
  CCE28380.1 239 AMAQKDYPVAIDFYTQALKIHPSNAVFLSNRAAAHSAAKDHASAR 283
                 69*************************************999997 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00016
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 a++d+a+A    e+a + dp +  a+ +L  a +a+g+ + A+++ ++  e++ +
  CCE28380.1 275 AAKDHASARTDAEAAVAVDPSYTKAWSRLGLARFAMGDAKGAMEAYSQGIEHEGN 329
                 689*****************************************99998887776 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0054       5.4       8      37 ..     236     265 ..     229     270 .. 0.87
   2 !   11.5   1.8   0.00045      0.44       7      42 ..     269     304 ..     265     307 .. 0.92
   3 !   10.3   0.1    0.0011         1       2      31 ..     298     327 ..     297     334 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0054
      TPR_14   8 aeallalGdpdeAiallrralalaPddaea 37 
                 + a +a+ d+  Ai+ + +al+ +P++a++
  CCE28380.1 236 GNAAMAQKDYPVAIDFYTQALKIHPSNAVF 265
                 78999**********************986 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00045
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawllla 42 
                 +a+a+ a+ d++ A++ +++a+a +P+   aw +l+
  CCE28380.1 269 RAAAHSAAKDHASARTDAEAAVAVDPSYTKAWSRLG 304
                 799*****************************8876 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0011
      TPR_14   2 eallalaeallalGdpdeAiallrralala 31 
                 +a+ +l+ a +a Gd ++A++++ + +++ 
  CCE28380.1 298 KAWSRLGLARFAMGDAKGAMEAYSQGIEHE 327
                 59***********************99975 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.2   2.2e+03      13      34 .]     151     172 ..     147     172 .. 0.82
   2 !    7.6   0.0    0.0049       4.9       7      33 ..     235     261 ..     232     262 .. 0.92
   3 ?    3.8   0.0     0.083        83       6      33 ..     268     295 ..     265     296 .. 0.89
   4 !    9.8   0.0   0.00095      0.95       2      29 ..     298     325 ..     297     325 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.2
                 HTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  13 klgdyeeAkeyyekaleldpdn 34 
                 ++   + A+ ++ ++ + d ++
  CCE28380.1 151 DKDSVDVAVNCIAECFKVDAND 172
                 66677889*********99885 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0049
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpd 33 
                 +g++ + ++dy  A+ +y +al++ p+
  CCE28380.1 235 KGNAAMAQKDYPVAIDFYTQALKIHPS 261
                 79999******************9876 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.083
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpd 33 
                 n + +++  +d+ +A    e a+  dp+
  CCE28380.1 268 NRAAAHSAAKDHASARTDAEAAVAVDPS 295
                 667789999*****************97 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00095
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 +a+ +lg++ + +gd + A+e+y + +e
  CCE28380.1 298 KAWSRLGLARFAMGDAKGAMEAYSQGIE 325
                 79*********************99876 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   2.2e-06    0.0022       8      75 ..     234     293 ..     227     295 .. 0.89
   2 ?    1.8   0.1      0.31   3.1e+02       5      28 ..     299     322 ..     295     326 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.2e-06
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                   +++ +++++y  A++++ +al i+     p +   a  l n + +++a+++++ A+   e a+a++
  CCE28380.1 234 SKGNAAMAQKDYPVAIDFYTQALKIH-----PSN---AVFLSNRAAAHSAAKDHASARTDAEAAVAVD 293
                 5799999***************9999.....765...*********************9999999876 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.31
      TPR_12   5 alnnlaavlrrlgrydeAlellek 28 
                 a+++l+++ +++g+   A e + +
  CCE28380.1 299 AWSRLGLARFAMGDAKGAMEAYSQ 322
                 566777777777777777666654 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1    0.0011       1.1       3      61 ..     237     295 ..     236     299 .. 0.95
   2 !   16.9   0.2   5.1e-06     0.005       3      60 ..     271     328 ..     269     337 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 ++a+ ++d+++a+  +   l ++P  +  +  R+ ++    + + A+ d ea++a++p+
  CCE28380.1 237 NAAMAQKDYPVAIDFYTQALKIHPSNAVFLSNRAAAHSAAKDHASARTDAEAAVAVDPS 295
                 57899****************************************************96 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 5.1e-06
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 a++  ++d++ a   +e  ++++P     +   Gl+++ +G+ ++A+++  + +++++
  CCE28380.1 271 AAHSAAKDHASARTDAEAAVAVDPSYTKAWSRLGLARFAMGDAKGAMEAYSQGIEHEG 328
                 57899*******************************************9999888876 PP

>> GHBP  Growth hormone receptor binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   1.8   1.6e-05     0.016      60     219 ..     145     297 ..     124     302 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
        GHBP  60 ntlsakdddsgras.cyepdiletdfsasdtcdgtsdvaqskkl.ekeedllclqqkdeekslesveespatespektkseesksrpllatestsplvq 156
                 +tl+a+d ds   +  + ++ ++ d + +++  ++   +    + +  e+l ++ +  + +++ s + s+a   +e  + e++k      +e  +   +
  CCE28380.1 145 GTLTAEDKDSVDVAvNCIAECFKVDANDKEAVKAAVGSQSLLSIySVYEKLKASTTGGSASASGSASGSSAPAAGEL-SDEQKKE-----AEGLKSKGN 237
                 56666666665433145666666666655555555555555555455566666666655566665555555555554.2222222.....344455666 PP

        GHBP 157 tqlsnqqslvniDfYaQVsdvtPaGsVVLSPGqklkiqesqsesekeaqkkkkenlvvdsaYf 219
                 + + +++  v iDfY+Q   + P+ +V LS      +++s ++ +  a++ +++ ++vd +Y+
  CCE28380.1 238 AAMAQKDYPVAIDFYTQALKIHPSNAVFLSNR---AAAHSAAKDHASARTDAEAAVAVDPSYT 297
                 6777777789********************64...3455666666666777888888888887 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0     0.003         3       6      30 ..     236     260 ..     232     264 .. 0.83
   2 ?   -1.8   0.0       4.5   4.4e+03       2      32 ..     266     294 ..     266     295 .. 0.79
   3 ?    3.8   0.0     0.072        72       1      29 [.     299     325 ..     299     332 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.003
       TPR_7   6 arlysrlGdyeeAielyeqsLaltk 30 
                 +++  ++ dy  Ai++y+q+L ++ 
  CCE28380.1 236 GNAAMAQKDYPVAIDFYTQALKIHP 260
                 77888899***********888775 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.5
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 L+n a ++s+  d++ A +  e+  a++ dp
  CCE28380.1 266 LSNRAAAHSAAKDHASARTDAEA--AVAVDP 294
                 67889999999999988887777..777766 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.072
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLalt 29 
                 a+++L+ +++++Gd + A e y q  +++
  CCE28380.1 299 AWSRLGLARFAMGDAKGAMEAYSQ--GIE 325
                 7899****************9988..766 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   3.4   4.9e-05     0.049      12      45 ..     398     431 ..     398     435 .. 0.90
   2 ?    2.5   0.2      0.14   1.4e+02      12      26 ..     446     460 ..     437     467 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.9e-05
        STI1  12 PetrellsDPefvakleeiqsNPqalqqymsDpr 45 
                 P++  ++s+P f ++ + ++sNP  +++ ms+p 
  CCE28380.1 398 PDLGSIMSNPMFASMAQNLMSNPDLMSNLMSNPG 431
                 566689**************************96 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.14
        STI1  12 PetrellsDPefvak 26 
                 P+++ l+sDP+   +
  CCE28380.1 446 PDLSSLMSDPTIADM 460
                 555566666665544 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00016      0.16       1      29 [.     400     428 ..     400     434 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
  XPC-binding   1 LefLrnnpqFqqlRqlvqqnPqlLqplLq 29 
                  L ++++np+F+ + q + +nP l++ l+ 
   CCE28380.1 400 LGSIMSNPMFASMAQNLMSNPDLMSNLMS 428
                  56789********************9996 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.34   3.4e+02       9      32 ..     236     259 ..     234     259 .. 0.90
   2 ?    9.9   0.3   0.00066      0.66       5      30 ..     266     291 ..     263     292 .. 0.92
   3 ?   -2.7   0.1       6.4   6.4e+03       8      24 ..     303     319 ..     301     322 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.34
      TPR_10   9 analrqrgrydeAealleealair 32 
                 +na  ++++y  A +++ +al i+
  CCE28380.1 236 GNAAMAQKDYPVAIDFYTQALKIH 259
                 788999**************9986 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00066
      TPR_10   5 lnNLanalrqrgrydeAealleeala 30 
                 l+N a+a+++ ++++ A+ ++e a+a
  CCE28380.1 266 LSNRAAAHSAAKDHASARTDAEAAVA 291
                 89**********************98 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 6.4
      TPR_10   8 LanalrqrgrydeAeal 24 
                 L+ a +++g+ ++A++ 
  CCE28380.1 303 LGLARFAMGDAKGAMEA 319
                 88888999999999876 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.7   0.00035      0.35      65     121 ..     266     322 ..     253     326 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00035
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH CS
        BTAD  65 lealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYer 121
                 l  +a+a+++  +++ a +++ea+va +P   +++  l +A +++G+   A+e+Y +
  CCE28380.1 266 LSNRAAAHSAAKDHASARTDAEAAVAVDPSYTKAWSRLGLARFAMGDAKGAMEAYSQ 322
                 6789999************************************************87 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.078        78       9      32 ..     238     261 ..     235     262 .. 0.85
   2 ?    8.8   0.4    0.0027       2.7       5      25 ..     302     322 ..     298     322 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.078
                 HHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   9 syrklgdtdkAlealerlikeYPd 32 
                 +  +++d+  A++ + + +k +P 
  CCE28380.1 238 AAMAQKDYPVAIDFYTQALKIHPS 261
                 556788****************96 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealer 25 
                 +l+l+++++gd+  A+ea+ +
  CCE28380.1 302 RLGLARFAMGDAKGAMEAYSQ 322
                 89****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3267.92
//
Query:       CCE28381.1  [L=548]
Description: uncharacterized protein CPUR_01856 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.054   13.6  10.8      0.083   13.0  10.8    1.3  1  RINGv           RING-variant domain
        4.6    7.1  12.5        9.2    6.2  12.5    1.4  1  zf-RING_4       RING/Ubox like zinc-binding domain


Domain annotation for each model (and alignments):
>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0  10.8   9.3e-06     0.083       1      48 []      30      80 ..      30      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.3e-06
                ETTTTEE-SSSS...--B-SS--STCCCSB-HHHHHHHHHHTCT-SB...-TTT CS
       RINGv  1 CriCleeeeese...plispCkCrGslklvHesClekWldekeantq...CeiC 48
                C +Cl++ee s+   +++ pC C+     +H++C+  W+   e+n++   C +C
  CCE28381.1 30 CFLCLMDEEPSDgpdSWVDPCPCTL---EAHQDCMLCWVVDCERNNKplkCPVC 80
                899*99999888999********98...68**********9666655666***9 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  12.5     0.001       9.2       6      45 ..      38      82 ..      30      84 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.001
   zf-RING_4  6 eeldetdkdlkpCeCg...yqiClfCyhrile..eeegrCPaCre 45
                e+ d  d+ + pC+C    +q C+ C+   +e  ++  +CP C+ 
  CCE28381.1 38 EPSDGPDSWVDPCPCTleaHQDCMLCWVVDCErnNKPLKCPVCKA 82
                455999*********6333788*****866664466789****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3883.82
//
Query:       CCE28382.1  [L=246]
Description: uncharacterized protein CPUR_01857 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1898.56
//
Query:       CCE28383.1  [L=526]
Description: related to galactokinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-20   70.5   0.3    1.1e-19   69.7   0.3    1.5  1  GalKase_gal_bdg  Galactokinase galactose-binding signature
    1.1e-15   57.6   2.5    1.1e-15   57.6   2.5    2.1  2  GHMP_kinases_N   GHMP kinases N terminal domain
    6.3e-10   39.3   0.0    1.7e-09   37.9   0.0    1.7  1  GHMP_kinases_C   GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GalKase_gal_bdg  Galactokinase galactose-binding signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.3   1.9e-23   1.1e-19       2      48 ..      33      80 ..      32      81 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.9e-23
                     HHHHHHS--.-EEEEEEEEEEEE--S-TTTT-EEEEEEEEEEEEEEEE CS
  GalKase_gal_bdg  2 eFqktFgke.pfvasAPGRvnLiGEHtDYngGfVlpmAieqdiyiavs 48
                     +F+ ++g++  f+a++PGRvn+ GEH+DY+ ++VlpmAi+ d ++av+
       CCE28383.1 33 AFEAAYGHKaSFIARSPGRVNIVGEHIDYSLYSVLPMAITADAVMAVA 80
                     7********77***********************************97 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1         3   1.8e+04      24      43 ..      30      44 ..      29      47 .. 0.71
   2 !   57.6   2.5   1.8e-19   1.1e-15       1      65 [.     154     221 ..     154     222 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3
                    HHHHHHHHTTEHHHHHHHHH CS
  GHMP_kinases_N 24 lvaAllallglsleeaklal 43
                    l+aA+ a++g     +k ++
      CCE28383.1 30 LLAAFEAAYG-----HKASF 44
                    6888888888.....66665 PP

  == domain 2  score: 57.6 bits;  conditional E-value: 1.8e-19
                     EEEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEH.H.HH..HHHHHHHHHHHHHHHHHSHHHHHHHHS CS
  GHMP_kinases_N   1 divikseiPvgaGLGSSAAlavalvaAllallgls.l.ee..aklaleaerlaqggngsggDvaasvyG 65 
                     di +++++Pvg GL+SSAA++ a ++A+ +++g + + ++   +la+++er+++ +n++g+D+aasv+ 
      CCE28383.1 154 DIMVDGTVPVGGGLSSSAAVVSASALAVMKANGEKaVdKKelTELAIVSERAVG-VNSGGMDQAASVFS 221
                     699*****************************9885452257*********998.************96 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   2.9e-13   1.7e-09      11      84 ..     421     492 ..     417     493 .. 0.92

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 2.9e-13
  GHMP_kinases_C  11 ellgellnlsqrs.elkavvgilppeleellealselGalgaklsGaGgGptvfalfkdkdeaeqvaralreefe 84 
                     ++lg ++n+ q+s      ++ ++pe +e++++++++G +g++ +GaG+G++ ++l+   d++++v++al++ ++
      CCE28383.1 421 QELGSIMNDTQEScRV--LYENSCPENDEICRIALAAGSYGSRQTGAGWGGCSVHLV-PADKVDAVQSALQRDYY 492
                     799*********9755..8999***********************************.************88775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3728.72
//
Query:       CCE28384.1  [L=56]
Description: uncharacterized protein CPUR_01859 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.46    9.6   7.3       0.47    9.5   7.3    1.0  1  DUF2457         Protein of unknown function (DUF2457)
       0.55   10.7   7.2       0.58   10.6   7.2    1.1  1  CENP-B_dimeris  Centromere protein B dimerisation domain
        7.4    4.5   7.0        7.6    4.5   7.0    1.0  1  DNA_pol_phi     DNA polymerase phi


Domain annotation for each model (and alignments):
>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.3   7.8e-05      0.47      60     103 ..       5      47 ..       2      55 .. 0.43

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 7.8e-05
     DUF2457  60 deedeeddddddddedddedddeedededddstvedlseeasdG 103
                 de+++ +  +dd +++d++d+d++d+d   +++v+ l+ +  dG
  CCE28384.1   5 DEDEKGEIREDDRNNKDNKDEDDDDKDG-RRTRVSMLNIKMCDG 47 
                 3444444444444444444434444433.223333344444555 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   7.2   9.8e-05      0.58       9      39 ..       5      33 ..       1      46 [. 0.46

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.8e-05
  CENP-B_dimeris  9 gedsesesdeeeeeeeedeededeeddeddd 39
                     ed + e   e++ +++d++ded +dd+d+ 
      CCE28384.1  5 DEDEKGEI-REDDRNNKDNKDED-DDDKDGR 33
                    33333333.23333333443333.3444444 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   7.0    0.0013       7.6     648     674 ..       5      31 ..       2      47 .. 0.43

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0013
  DNA_pol_phi 648 deeeeeeddeededseedddeeesded 674
                  de+e++e  e+d ++++++de+++d+d
   CCE28384.1   5 DEDEKGEIREDDRNNKDNKDEDDDDKD 31 
                  222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 436.05
//
Query:       CCE28385.1  [L=420]
Description: uncharacterized protein CPUR_01860 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3028.20
//
Query:       CCE28386.1  [L=600]
Description: uncharacterized protein CPUR_01861 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.8    7.6   8.5        5.8    7.6   1.5    3.1  2  zf-C2H2    Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.5   0.00033       5.8       1      23 []     147     175 ..     147     175 .. 0.94
   2 ?    2.8   0.8      0.01   1.9e+02       3      23 .]     183     206 ..     181     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00033
                 EEETTTT.....EEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCg.....ksFkrksnLkrHirt.H 23 
                 y+Cp C        F rks++k+H+   H
  CCE28386.1 147 YQCPMCFldnspVGFGRKSDFKKHLHNfH 175
                 99**********************98877 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.01
                 ET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   3 Cp..dCgksFkrksnLkrHirt.H 23 
                 C   +C+  F++   + +H +  H
  CCE28386.1 183 CRtkGCHSNFTTERAYSTHAKEaH 206
                 77779**************99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4322.71
//
Query:       CCE28387.1  [L=690]
Description: probable acetolactate synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-55  185.0   0.4    8.7e-54  181.7   0.0    2.6  3  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    5.9e-47  159.3   0.7      3e-45  153.7   0.1    2.9  3  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    1.2e-40  138.5   0.3    5.3e-40  136.3   0.2    2.2  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.59   3.5e+03     134     164 ..       5      36 ..       3      40 .. 0.77
   2 !  181.7   0.0   1.5e-57   8.7e-54       2     164 ..      90     251 ..      89     255 .. 0.99
   3 ?   -0.3   0.0      0.12   7.3e+02      79     141 ..     558     632 ..     553     649 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.59
                   GGHHHHHHHHHHHH.HSSS--EEEEEEEHHHC CS
  TPP_enzyme_N 134 eelpealrrAirta.lsgrpgPvylelpkdvl 164
                   +++ +al+ A +t   ++++ P+++ +++ v+
    CCE28387.1   5 RQASKALQAAAQTRsFTSTTSPAAVKVSRKVP 36 
                   56777888888877788889999999998886 PP

  == domain 2  score: 181.7 bits;  conditional E-value: 1.5e-57
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   t++e++ +++ +++v+h+fg+pG+ ilp++da+ +++ ++++l rhEqga+++A+gyara+gkpgvvlvtsgpGatn++t + +A +d++Pl+v++g
    CCE28387.1  90 TGGEIFHEMMLRQNVKHIFGYPGGAILPVFDAIYNSKHFDFILPRHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVITPMQDALSDGTPLVVFCG 186
                   899********************************************************************************************** PP

                   E--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHC CS
  TPP_enzyme_N  99 drptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvl 164
                   ++pt+ +g +++q e d +++ r +tk+++ v++++elp+ + +A+++a+sgrpgPv+++lpkdv 
    CCE28387.1 187 QVPTTAIGSDAFQ-EADVVGISRACTKWNVMVKNVAELPRRINEAFEIATSGRPGPVLVDLPKDVT 251
                   *************.**************************************************96 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.12
                   CHHHHHHHHHHT--EEEEEEE--CCCHH............S..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHH CS
  TPP_enzyme_N  79 altalaeAkvdriPllvlsgdrptslrg............qgvlqqeldqlalfrpvtkyaervtspeelpealr 141
                   +lt la+A++ +i + +++ +++++                ++ q + d ++l++++   ++r+ +p++++e+l 
    CCE28387.1 558 TLTELATASQFNIGVKIIVLNNEEQGMVtqwqnlfyedryAHTHQVNPDFMKLAESMRIQSRRLVNPADTVEYLT 632
                   578888888888888888888887777767777777776555556445888888877777777777777777765 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.017     1e+02     107     152 ..     197     245 ..     182     246 .. 0.73
   2 ?   -1.5   0.1      0.33     2e+03      60     120 ..     353     419 ..     351     432 .. 0.63
   3 !  153.7   0.1     5e-49     3e-45       1     153 []     498     645 ..     498     645 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.017
                   BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHH.....CSSSEEEEE CS
  TPP_enzyme_C 107 dlkpvdfaklaealGakgarvekadveeleealkeal.....ekkgpalie 152
                    +++ d++ + +a+      v +++v+el + + ea+      + gp+l++
    CCE28387.1 197 AFQEADVVGISRACTKW--NVMVKNVAELPRRINEAFeiatsGRPGPVLVD 245
                   37778888888888333..55567779999999999888878899999998 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.33
                   HTGGGHHHHHHTT-SEEEEE...EE-SBCCCHHHH...HHHHTCCTTTTSBB.BS----HHHHHHHT CS
  TPP_enzyme_C  60 milqelatavrrnlpitvvv...lnNegygmtggq...qepfggkrksgpagkdlkpvdfaklaeal 120
                   m+++++a+++ + +++++ +   ++++++g++ +     + + ++++ g  + + +p+++ k+++a 
    CCE28387.1 353 MHGSAYANMAMQEADLIIALgsrFDDRVTGNIAKFapgAKAAAAQKRGGIVHFEIMPKNINKVVQAT 419
                   7777788888887888877766678888888877655533333334444443456666666666665 PP

  == domain 3  score: 153.7 bits;  conditional E-value: 5e-49
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   ++G++++w+a++++ + prs++tsgglgtmGyglpaAiGak+a+pd+ v+ i GD +f m+l+elata + n+ ++++vlnNe  gm+ ++q+ f++
    CCE28387.1 498 GVGQHQMWTAQHFRWRHPRSMITSGGLGTMGYGLPAAIGAKVAQPDALVIDIDGDASFGMTLTELATASQFNIGVKIIVLNNEEQGMVTQWQNLFYE 594
                   69*********************************************************************************************** PP

                   CTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  98 krksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                   +r+++++   + ++df klae++ ++  r+ ++  +++ e l + ++++gpal+ev
    CCE28387.1 595 DRYAHTH---QVNPDFMKLAESMRIQSRRLVNP--ADTVEYLTWLINSDGPALLEV 645
                   *****99...8899************9986666..*******************97 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.53   3.1e+03      51      81 ..     174     204 ..     167     206 .. 0.74
   2 !  136.3   0.2   8.9e-44   5.3e-40       1     136 [.     288     432 ..     288     433 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.53
                   SS-TTSTTEEEESGGGSCHHHHHHHHH-SEE CS
  TPP_enzyme_M  51 vipedhplylgmlglhgskaanealeeaDlv 81 
                   ++++  pl +    +  ++ +++a++eaD+v
    CCE28387.1 174 ALSDGTPLVVFCGQVPTTAIGSDAFQEADVV 204
                   6666777776666666678899999****98 PP

  == domain 2  score: 136.3 bits;  conditional E-value: 8.9e-44
                   HHHHHHHHHH-SSEEEEE-CHHCHT.TGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvars.gaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgs 96 
                   i+++ael + ak+pvi++G+g+ +s +  + l+el+ek+ iPv+ttl+g g ++e ++++l+mlg+hgs++an+a++eaDl++alG+rfdd r+tg+
    CCE28387.1 288 IKRVAELFNIAKQPVIYAGQGIVQSeDGPALLKELSEKCSIPVTTTLHGLGGFDELDEKSLHMLGMHGSAYANMAMQEADLIIALGSRFDD-RVTGN 383
                   799*******************99978****************************************************************.***** PP

                   TTTTTTT-E.........EEEEESSCCCCTTCC--SEEEECTHHHHHHH CS
  TPP_enzyme_M  97 epefapeak.........iihididpaeigknyqvdlaivgdvketlea 136
                     +fap ak         i+h++i p++i+k++q++ ai gdv+++++ 
    CCE28387.1 384 IAKFAPGAKaaaaqkrggIVHFEIMPKNINKVVQATEAIEGDVAASMKL 432
                   *******87788888999**************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 5353.53
//
Query:       CCE28388.1  [L=591]
Description: related to multidrug resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-40  138.6  56.0    1.7e-39  135.7  56.0    2.1  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.017   15.8   1.0      0.032   14.9   1.0    1.4  1  MBD_C     C-terminal domain of methyl-CpG binding protein 2 a
       0.12   12.3   0.2       0.12   12.3   0.2    3.2  4  DUF1418   Protein of unknown function (DUF1418)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7  56.0   2.9e-43   1.7e-39       3     351 ..     107     510 ..     101     512 .. 0.88

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 2.9e-43
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgag 100
                 ++ ++s +a++ ++++lp  +a++l+i +s+  + +++  l++a++  p++rl d +G r v+l g +++++++++  f+++ + +l+ +r++qG+g++
  CCE28388.1 107 MSMMMSEYAIGGFNIVLP-PIADALNIPASSRTWPAGVTNLTTAALLQPFARLCDLYGGRAVFLSGQIWLLIWSVISGFSQN-TtMLITCRAMQGIGSA 203
                 55566666777799999*.8*****************************************************777779555.55************** PP

       MFS_1 101 alfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 a++pag+a++++++ + +++++++++++a++ +G+ +g  +g+l +++l Wr+ f++ a+++++ ++     +   p++ + ++p+ +           
  CCE28388.1 204 AFLPAGLAILSQMYRPgPRKNLVFAIYGAFACVGFYFGIFVGALTTEYLDWRWYFWVGAVIGVVIVI---SGFISIPRNLGDVNPEAKMdwlgvitivp 299
                 ****************************************************************977...666666666666666666679******** PP

       MFS_1 189 ..........................................kgtgpaplvp..awkallkdpvlwillialllfffgfsglltllplylqevlglsgl 243
                                                            ++  +pl+p  ++ka   ++    l++al+l   +f ++l+++ +y+ +v++++  
  CCE28388.1 300 glvlvvfaftdgghapngwrtpyiyvtlilgvmflaaavyvqGWVSSQPLLPpaLFKAKYMKR----LMAALFLSYGVFGLFLFYSSFYIETVMHIK-P 393
                 ************************************999885333333333344466666666....********999999****************.6 PP

       MFS_1 244 llaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt........ssavllllvlvliGf.glgfvfpsllalasdlappee 333
                 +l+++ +  la++g++la+ +g +++ ++++  +++++++++l++l++a+++ +          +++++++ +++G+ g+ ++f   +++++  +p+++
  CCE28388.1 394 ILTAAWFTPLAVGGMVLAIGGGLVLHIIPNKVLMIISCSGFILSVLFFAIIPDPdtsgkstsFIYWAYIFPAMICGTvGVDITFNVTNVFITTAMPRRH 492
                 7888788888888888888888888*****************************999964444444444466669999********************* PP

       MFS_1 334 agtasglfntagslggal 351
                 +++a g++n++ +lg+a+
  CCE28388.1 493 QAAAGGVINSLLYLGIAF 510
                 ***************987 PP

>> MBD_C  C-terminal domain of methyl-CpG binding protein 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.0   5.3e-06     0.032      59      87 ..      10      38 ..       4      44 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.3e-06
       MBD_C 59 lnvdqplcksvviteeDIrrQeekVkkaR 87
                l ++ p+ck+ +i+e+ I++Qe + +++R
  CCE28388.1 10 LAPPRPVCKTSTIQEKKIQQQETRLQRTR 38
                67899**********************99 PP

>> DUF1418  Protein of unknown function (DUF1418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.1   1.3e+04      62      73 ..     175     186 ..     162     191 .. 0.76
   2 ?   12.3   0.2   1.9e-05      0.12      26      67 ..     267     308 ..     259     321 .. 0.88
   3 ?   -2.4   0.1      0.76   4.5e+03      15      26 ..     327     338 ..     321     351 .. 0.66
   4 ?   -2.2   0.1      0.64   3.8e+03      56      69 ..     420     433 ..     398     453 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.1
     DUF1418  62 alvwrvaqalap 73 
                  l+w v+++++ 
  CCE28388.1 175 LLIWSVISGFSQ 186
                 578999998865 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.9e-05
     DUF1418  26 yLsvndylsLPgplsskeaaivmiflGvllllPaavalvwrv 67 
                  + ++ ++s+P +l+  +    m +lGv+ ++P  v +v+  
  CCE28388.1 267 VIVISGFISIPRNLGDVNPEAKMDWLGVITIVPGLVLVVFAF 308
                 467899********************************9865 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.76
     DUF1418  15 evlGliLLvlay 26 
                  +lG+++L++a 
  CCE28388.1 327 LILGVMFLAAAV 338
                 456666666543 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.64
     DUF1418  56 llPaavalvwrvaq 69 
                 ++P  v ++     
  CCE28388.1 420 IIPNKVLMIISCSG 433
                 44444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 4317.17
//
Query:       CCE28389.1  [L=285]
Description: related to acetylxylan esterase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-42  143.2   1.7    1.2e-41  142.7   1.7    1.2  1  Cutinase       Cutinase
      5e-06   26.2   0.1      7e-06   25.8   0.1    1.3  1  PE-PPE         PE-PPE domain
      0.001   18.9   0.0     0.0015   18.4   0.0    1.2  1  Abhydrolase_2  Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> Cutinase  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   1.7     2e-45   1.2e-41       4     177 ..      33     229 ..      29     230 .. 0.94

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 2e-45
                 SEEEEEE--TT--TTTSSHHHHHHHHHHHH.TTT-EEEEE------CGG.STTSS-HHHHHHHHHHHHHHHHH-TT-EEEEEEETHHHHHHHHHHTT.. CS
    Cutinase   4 dvevifArgttepgglgsvGeavvsalesavgsksvavqgvnYpAdleq.lyegseeagakeaaalvqslaskCPdtkivlgGYSqGaqvidnaiegga 101
                 ++++i  rgt+e+ g+g++G+ +  ++++ v+ +  ++++ +YpA+l++ +y +s  +g+k++++l+++ +++CP+ k++++GYSqGaqv+ ++++g+ 
  CCE28389.1  33 GLYIISVRGTGEERGIGVAGTIIGTQVQRRVNGT--KIVALDYPATLSDpSYVDSVVNGTKSLSQLISEHVKSCPNDKMAIMGYSQGAQVTLDTLCGSD 129
                 578999*********************9999854..556678*****999***********************************************87 PP

                 ..........S-HHHHHHEEEEEEES-TTCCCCTT.................S-TTS-GGGEEEE--TT-GGGTS----GGGG-GGGG.HHHHHHHHHH CS
    Cutinase 102 ......tat.lpaavadkvaavvlfGdpsnvaglp.................evsklyaskikslCdagDpiCgsgneleaHlsYvseyttqaakFvvs 176
                       ta+  +++++++v+av++fGdp+ v +++                   +  ya+ i s+Cd+gD++C++gn++++H +Y+++y+ ++++F+v 
  CCE28389.1 130 eplfdnTAAiASDEIKKHVVAVAIFGDPTYVPNVTynkgnstmegvfarknsDSCLRYADIISSWCDTGDVYCAGGNSTAVHSQYFTKYGIDIVNFIVD 228
                 9999865557999*****************9999999*************9999999****************************************98 PP

                 H CS
    Cutinase 177 k 177
                 k
  CCE28389.1 229 K 229
                 6 PP

>> PE-PPE  PE-PPE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   1.2e-09     7e-06      11     120 ..      74     172 ..      65     246 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.2e-09
      PE-PPE  11 PasflpvtglksltvdeSvaeGtenLeaairaela..agekvvvfGySqgalvasnekarlaalsepaapdqlsfvlvgnpnrpnggllarfpggltip 107
                 Pa       l+++++ +Sv +Gt++L + i+++ +    +k++++GySqga v      +l  ++ep    + + + +++  ++  + +a+f   +++p
  CCE28389.1  74 PA------TLSDPSYVDSVVNGTKSLSQLISEHVKscPNDKMAIMGYSQGAQVTL---DTLCGSDEPLF--DNTAAIASDEIKKHVVAVAIFGDPTYVP 161
                 43......367899*****************9877668999**********9964...45666555665..6677778888888888888888888888 PP

      PE-PPE 108 ilgitftgatptd 120
                    +t++ +++t 
  CCE28389.1 162 N--VTYNKGNSTM 172
                 8..8888877765 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.6e-07    0.0015      83     130 ..      86     132 ..      75     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.6e-07
                    HHHHHHHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHT-SS-- CS
  Abhydrolase_2  83 ikksaekleelidaelkkgipssriiigGFSqGaalalylaltlpkkl 130
                    + + +++l++li +++k + p+++ +i+G+SqGa ++l +   + ++l
     CCE28389.1  86 VVNGTKSLSQLISEHVK-SCPNDKMAIMGYSQGAQVTLDTLCGSDEPL 132
                    56778899****99986.68*******************998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2125.83
//
Query:       CCE28390.1  [L=548]
Description: uncharacterized protein CPUR_01865 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-48  164.2   0.9    5.8e-47  160.5   0.9    2.0  1  Peptidase_S28  Serine carboxypeptidase S28
  ------ inclusion threshold ------
       0.25   10.5   0.0       0.38    9.9   0.0    1.2  1  DUF2920        Protein of unknown function (DUF2920)


Domain annotation for each model (and alignments):
>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   0.9   6.5e-51   5.8e-47       2     421 ..      58     513 ..      56     522 .. 0.75

  Alignments for each domain:
  == domain 1  score: 160.5 bits;  conditional E-value: 6.5e-51
  Peptidase_S28   2 klDhFdasnkrtfqqryfvndqfykng.gpiflyiGgegslsaswvsng.eilklAkefgAlvlslEHRfYGqSiPvkdlstenlrylsseqaLaD 95 
                     lDh ++    tf+qry++n++++    +p+ l    e    ++ v n  +  ++A+  +A+vl lEHR+YG+S P+++l+t+nl++l+   a++D
     CCE28390.1  58 LLDH-KNPHLGTFSQRYWYNAEWWAGPgAPVILRGPDESDGWDGYVGNTtQSFEFARTNKAAVLALEHRYYGESSPFQNLTTTNLQHLTLDNAIQD 152
                    5666.455678************9987588888877777777888877789********************************************* PP

  Peptidase_S28  96 lasfikal.....kqkfklsssskwitfGgSYsgsLaawarkkyPelvvgavaSSaPllakvdfkeylevvetslakvagecakaveqgfaeveel 186
                    +++f + +     k++    ++++w++ G+SY+g+L+aw++ + P +  +   SSa ++a  df++y+e +e+ +    ++c    ++++a+++++
     CCE28390.1 153 IVYFANNVvlpfdKKRTSSPDKAPWVLTGCSYAGALSAWVQRLAPGTFWAYHCSSAVVEAISDFWQYFEPIEAGMP---KNCSSDLKTAIAHIDKV 245
                    ****99873333335555667889***********************************************98765...57*************** PP

  Peptidase_S28 187 lktkegr..qalkeelql....cskldektdkdv.....akffsniasefqgvvqys...ydgkanaalsaisikelCklllnasktdlilrvevl 268
                    l++++++  ++lk+++ l    +++++++  +++      kf s+  ++f    +y     ++++n + s+++ +    + ln+       r  + 
     CCE28390.1 246 LASGDAKagNDLKKQFGLeaipNNDFGQALRQGLsgwqgLKFKSTWHDPFYDFCDYLenvFPEAKNNSKSHTQLPGPEGVGLNKALHGF-ARWSNE 340
                    *9987652267888887621224566666333321111145677888889999998633345556666666666666666666655444.556666 PP

  Peptidase_S28 269 iqlfkslnqk.....slnlstadisyqlanaekkdsslesladdrqWlyqtCtE.fgfyqttds...eaqlfgskvpvelyidlCedvFgasynsk 355
                      + +++n++      +n s++ ++y+  ++ + +++  +  +drqW++  C+E + ++q ++    + +l +  + v++  ++C + F  + ns+
     CCE28390.1 341 VLIPNNCNGYpywanQGNYSVECFDYNNPQNPMFHDTSVENWADRQWTWSLCNEpYEWWQVSGPtgqDTGLVSRFLDVNYKRTVCKNYFPREGNST 436
                    6666677766444444555555556666666555555566889***********8899998765554889999999999999*******8877776 PP

  Peptidase_S28 356 k...vsqavkatnskYGgadnpkatnvvfvnGalDPWhalglkks........tdssvvpllikgaahcaDmypass 421
                    +       v+++n+k  g d  k+++v++v G++DPW+   +  +        +  + ++ ++++a hc+D+y ++ 
     CCE28390.1 437 YgldAGRTVDMINKKTSGWDVGKTERVMWVGGEFDPWRPATVLADrrpggplqSTPEAPAWIVPKATHCSDVYLKNV 513
                    52115678999****9999******************97764333111111113345678899********997655 PP

>> DUF2920  Protein of unknown function (DUF2920)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   4.2e-05      0.38     171     213 ..     166     208 ..     141     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 4.2e-05
     DUF2920 171 vkrfpkeadlpviliGgsyGGYlalLiaKiaPwyvdgvlDnss 213
                 +kr + +   p +l G sy G l+  + ++aP+++ +    s+
  CCE28390.1 166 KKRTSSPDKAPWVLTGCSYAGALSAWVQRLAPGTFWAYHCSSA 208
                 4566666689***********************9987665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4117.27
//
Query:       CCE28391.1  [L=548]
Description: uncharacterized protein CPUR_01866 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-44  151.7   1.1    3.8e-43  147.9   1.1    2.0  1  Peptidase_S28  Serine carboxypeptidase S28


Domain annotation for each model (and alignments):
>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9   1.1   2.1e-47   3.8e-43       2     415 ..      58     507 ..      56     520 .. 0.73

  Alignments for each domain:
  == domain 1  score: 147.9 bits;  conditional E-value: 2.1e-47
  Peptidase_S28   2 klDhFdasnkrtfqqryfvndqfykng.gpiflyiGgegslsaswvsng.eilklAkefgAlvlslEHRfYGqSiPvkdlstenlrylsseqaLaD 95 
                     lDh ++    tf+qry++n +++    +p+ l    e    +++v n  +  ++ +  +A+++ lEHR+YG+S P+++l+t+nl++l+   a++D
     CCE28391.1  58 LLDH-KNPHLGTFSQRYWYNTEWWAGPgAPVILRAPEEVDGWDGNVGNStQSFEFGRTNKAAIIALEHRYYGESSPFQNLTTTNLQHLTLDNAIQD 152
                    5666.455678***********999766************99999999989********************************************* PP

  Peptidase_S28  96 lasfikal.....kqkfklsssskwitfGgSYsgsLaawarkkyPelvvgavaSSaPllakvdfkeylevvetslakvagecakaveqgfaeveel 186
                    +++f + +     k++    ++++w++ G+SY+g+L+aw++ + P +  +   SSa ++a  df++y+e +++ +    ++c    + ++a+++++
     CCE28391.1 153 IVYFANNVvlpfdKKRTSSPDKAPWVLTGCSYAGALSAWVQRLAPGTFWAYHCSSAVVEAISDFWQYFEPTKAGM---PKNCSSDLRMAIAHIDKV 245
                    ****99873333335555667889********************************************9888765...557*************** PP

  Peptidase_S28 187 lktke..grqalkeelql....cskldek..tdkdva..kff.sniasefqgvvqys.....ydgkanaalsaisikelCklllna....sktdli 262
                    l++++  + ++lk+ + l    +++++e+  t  d +    f    +++f    +y      + ++++ +++++  +e   l++       + +++
     CCE28391.1 246 LASGDvkAGHDLKKRFGLeaipNNDFGEAlhTGVDDWqdISFdPSWYNPFYDFCDYIenvfpEAKNNSKSHKHLPGPEGVGLHKALhgfaRWSNEV 341
                    999852266788777765112234555553222222211223135577777777775223212333334444444444444443212222444443 PP

  Peptidase_S28 263 lrvevliqlfkslnqkslnlstadisyqlanaekkdsslesladdrqWlyqtCtE.fgfyqttds...eaqlfgskvpvelyidlCedvFgasyns 354
                      + +  + + + ++  +n s++ ++y+  ++ + +++  +  ++rqW +  C+E f ++q ++    + +l +  + v++   +C + F  + n+
     CCE28391.1 342 -LIPNNCNSYPYWEN-QGNHSVECFDYNNPQNPMFHDTSVENWANRQWWWFLCNEpFEWWQVSGPagqDTGLVSRFMDVNYKRAVCKNFFAREGNN 435
                    .33333444444443.5677777777777777777776677889***********999***9876665888888889999999********99999 PP

  Peptidase_S28 355 kk...vsqavkatnskYGgadnpkatnvvfvnGalDPWhalglkks........tdssvvpllikgaahcaD 415
                    ++       v+++n+k  g d  k+++v++v G++DPW+   +  +        +  + ++ ++++a hc+D
     CCE28391.1 436 TFgldAGRTVDMINKKTSGWDIGKTERVMWVGGEFDPWRPATVLADrrpggplqSTPETPAWIVPNARHCSD 507
                    863224567999****9999******************9766433211111110223445667777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3951.72
//
Query:       CCE28392.1  [L=431]
Description: uncharacterized protein CPUR_01867 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3261.90
//
Query:       CCE28393.1  [L=228]
Description: uncharacterized protein CPUR_01868 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-18   66.7   0.3    3.4e-18   66.1   0.3    1.3  1  Pre-PUA   Pre-PUA-like domain
      3e-12   46.3   0.7    1.1e-10   41.3   0.7    2.2  1  PUA       PUA domain


Domain annotation for each model (and alignments):
>> Pre-PUA  Pre-PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.3   3.8e-22   3.4e-18       8      87 .]      32     111 ..      27     111 .. 0.95

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 3.8e-22
     Pre-PUA   8 ksntqlksSdrrkLraklleqfpslseeqleellpkkeevkvvklqgehvelyvvdgeplffqd..regellPtlytlwkyP 87 
                 +++++lksS++r Lr++ l+++p+l +++++e+lpkk++++ +kl  ++ +lyv ++ep+f+q    +g+l+P+l++++++P
  CCE28393.1  32 SPKQKLKSSVQRSLRQSFLNSYPLL-TPHMDEILPKKASLSSMKLP-DRNTLYVLESEPIFYQLdgASGPLVPHLKLVHRFP 111
                 57899********************.********************.****************7345999***********9 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.7   1.3e-14   1.1e-10       1      72 [.     115     216 ..     115     218 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.3e-14
                 CEEEE-HHHHHHHHTT-EEEGGGEEEEETT-.............................-TTSEEEEEETT.SCEEEEEEESS-HHHHHHHCTSEEEE CS
         PUA   1 grvvvddgAvkallsgasLlapGvvevegdf.............................eegdvVaivded.gelvavGlanysseelakikggksve 69 
                 +++ +d+gA++++lsga L+apG+++ +g +                             ++g++V+i++e+ +e++avG     +ee+++  +g++ve
  CCE28393.1 115 PTIRIDRGAIRFVLSGATLMAPGLTSKGGRLpmegadkelvegkemeqradgegrwsrelRKGETVVILAEGkEEACAVGTLVTGTEEVKEKGKGPVVE 213
                 6899*******************************************************************769*********************9998 PP

                 EEE CS
         PUA  70 ier 72 
                   +
  CCE28393.1 214 DAH 216
                 666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1589.62
//
Query:       CCE28394.1  [L=280]
Description: uncharacterized protein CPUR_01869 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.12   13.2   0.0       0.29   12.0   0.0    1.6  1  EphA2_TM      Ephrin type-A receptor 2 transmembrane domain
       0.17   11.9   0.2       0.17   11.9   0.2    1.6  2  TNFR_16_TM    Tumor necrosis factor receptor member 16 trans-
       0.85    9.4   4.3       0.17   11.6   0.5    1.8  2  Adeno_E3_CR2  Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.9e-05      0.29       1      36 [.     202     237 ..     202     274 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.9e-05
    EphA2_TM   1 iiaaavaglvllvilvilvlvlvrrrsknrkqksdl 36 
                 ii+aa++g ++++ l  +v+ ++++r++n++  ++ 
  CCE28394.1 202 IIIAAIFGSFIILGLGYIVFACCQERKQNKQIAKKV 237
                 7999*******************9999998877764 PP

>> TNFR_16_TM  Tumor necrosis factor receptor member 16 trans-membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         2   1.2e+04      11      14 ..      84      87 ..      84      89 .. 0.83
   2 ?   11.9   0.2   2.8e-05      0.17      16      38 .]     211     232 ..     204     232 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2
  TNFR_16_TM 11 cSIL 14
                cSI+
  CCE28394.1 84 CSIM 87
                9**9 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.8e-05
  TNFR_16_TM  16 aVvvgLlaYvifKrwksckqnkq 38 
                 ++++gL  Y++f +++  kqnkq
  CCE28394.1 211 FIILGL-GYIVFACCQERKQNKQ 232
                 688886.6**************8 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2       2.1   1.2e+04      22      28 ..     174     180 ..     174     184 .. 0.77
   2 ?   11.6   0.5   2.9e-05      0.17       8      37 ..     203     231 ..     201     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.1
  Adeno_E3_CR2  22 cmlyYaC 28 
                   c+  Y+C
    CCE28394.1 174 CLHGYIC 180
                   6667999 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.9e-05
  Adeno_E3_CR2   8 IivaVvvGlaiIiicmlyYaCcYrkhraqk 37 
                   Ii+a+   ++i+ +  +++aCc  + + +k
    CCE28394.1 203 IIAAIFGSFIILGLGYIVFACCQERKQ-NK 231
                   788888889999**********99988.66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2146.03
//
Query:       CCE28395.1  [L=591]
Description: uncharacterized protein CPUR_01870 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-13   50.3   0.0    2.1e-11   43.1   0.0    3.4  3  AATase          Alcohol acetyltransferase
     0.0017   17.4   0.0     0.0025   16.8   0.0    1.2  1  Tri3            15-O-acetyltransferase Tri3
     0.0042   15.8   1.8      0.023   13.4   2.8    1.7  2  Condensation    Condensation domain
  ------ inclusion threshold ------
      0.018   14.8   5.5      0.055   13.2   5.3    1.7  1  WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransfer


Domain annotation for each model (and alignments):
>> AATase  Alcohol acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   4.6e-15   2.1e-11      25     354 ..      65     366 ..      58     370 .. 0.78
   2 ?    0.5   0.0     0.038   1.7e+02     400     433 ..     431     464 ..     393     471 .. 0.68
   3 ?   -1.8   0.0      0.19   8.4e+02     439     481 ..     520     562 ..     514     566 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 4.6e-15
      AATase  25 aelnkevdkeqLalalrslilknpiLaaniipkkfpeheayyssdeyyskPfpkeDyvkviekiklddvvlneqpeysellekileeykdddekvdeel 123
                 +    +++ + L+ al +lil +p+L   i+       ++  +   +   P      v   +++ ++ +  n   ey+e +  +  +++d    v    
  CCE28395.1  65 SRPTTHITPSLLYAALERLILAQPMLHVGIL-------DQHTNAARFCHIP-----HVDLAHHVSFSTLHCNSEQEYDEAISALHAQHHD-QRFV---- 146
                 5556789999*********************.......56778999*****.....8999999******999999999999999988887.3334.... PP

      AATase 124 nellselvipvgdpkkPlwrlivlpsaddkk........kwkkfvfitdHllfDGisgvnffkdlleelekikqdnalkkdevildy.ekdveele.kL 212
                            ++ ++P wr+ v++ + +          + +  vf++ H l DG+sg  f++dll +l+++  +   +++++      +  + ++  L
  CCE28395.1 147 -----------DVARRPAWRIEVVEAQGEAAqafsraglRAQDVVFAYHHALLDGTSGRMFHEDLLRQLNQLVCEREAEHNDLPAAAaLRSIPLPPaGL 234
                 ...........4455566666666554332222332234556677*************************99888886666665444345555555689 PP

      AATase 213 PkpieekvdyrpsllalpklllvsfiasklnfkkseekpltkehsavqksnkshqiilkispeevkkirakikknvhgkatlTpflqavffvalyklgk 311
                 P  ++  +    s ++  k+l++  +a +++ ++    p  +      ++ + ++i +++    + ++ a ++++    ++lT  +++  +v+l     
  CCE28395.1 235 P-ALQALIPASLSPIFAVKSLWTE-LAPAMLCSRP-PPPWHAAPIDLSRPYVTRTIPVSVPRGLLDRLLAACRSH---GTSLTGLVHVLTLVSLTA--- 324
                 9.8999999988888889999999.8889999886.4444444444458888889999999999***********...****************99... PP

      AATase 312 lfkeknsevsidvaipvntRrylpedeevrdsykYgtvvggse 354
                         v +  a+p++ R ylp d  + ++ +  +  ++ +
  CCE28395.1 325 -RLPAQDAVLFCAATPISLRPYLPRDLHLENMLSVLVTTHFYD 366
                 .3567788999***************99777766555555555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.038
      AATase 400 ildlllkyvnidkllkkkilktkrstaevsNlGl 433
                 +++ll    +   +l+kk  + +r   e+sN+G 
  CCE28395.1 431 LTSLLRFVPDWFAYLRKKNGQPRRESWELSNIGV 464
                 33445555677789*******************7 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.19
      AATase 439 eskykvkdliFsqaagslknafslnvistnsgGlnlslsvved 481
                 + ++++  + F + a  +  +f+l++ s+  g+l + ls  e 
  CCE28395.1 520 TPAFTISRAYFTNGAMPVGPPFGLGLASVSGGPLTIGLSWQEG 562
                 56789999999999999999***************99998765 PP

>> Tri3  15-O-acetyltransferase Tri3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.6e-07    0.0025     134     202 ..     140     209 ..     120     220 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.6e-07
        Tri3 134 leekrsaen.stPakavevfivadvenedteltastvvdvllhsnhlyfdGiskrlfvGdllrslaellg 202
                 + ++r+      Pa  +ev      + +    ++  + dv++   h   dG s r+f  dllr l++l+ 
  CCE28395.1 140 HHDQRFVDVaRRPAWRIEVVEAQGEAAQAFSRAGLRAQDVVFAYHHALLDGTSGRMFHEDLLRQLNQLVC 209
                 555555443356666666543333333333444556789****************************765 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   2.8   5.1e-06     0.023      37     168 ..      69     214 ..      58     220 .. 0.70
   2 ?   -2.9   0.0      0.44     2e+03     226     265 ..     285     324 ..     279     355 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-06
                   S---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-....TT-----EEEE-T..TSSSHHHHHHHHHHHH.HTC--SCCCS-SEEEEEEESST CS
  Condensation  37 geldlerlekalqelierhdaLRtvfleeengepvQvil....eerevelevleisdleeseeeeaieefaqkd.lqepfdLekgpLfraalfkiae 128
                     + +++l  al+ li   + L + +l ++++  + +       + +v++ +l+ +  +e+e +eai+++  ++  q+  d+++ p +r+++++ + 
    CCE28395.1  69 THITPSLLYAALERLILAQPMLHVGILDQHTNAARFCHIphvdLAHHVSFSTLHCN--SEQEYDEAISALHAQHhDQRFVDVARRPAWRIEVVEAQG 163
                   56777888888888888888888887665333333332223325556666777777..88888999999877773566669***********99654 PP

                   TEEE...........EEEEEECCT--TTTHHHHHHHHHHHHHHHHTT---- CS
  Condensation 129 nrll...........lllsvHHiivDGvSlgillrdlaklYqqlekgeelp 168
                   + +            +++++HH ++DG S + + +dl +  +ql +++e +
    CCE28395.1 164 EAAQafsraglraqdVVFAYHHALLDGTSGRMFHEDLLRQLNQLVCEREAE 214
                   33222223333333479********************99999998888765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.44
                   -EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHH CS
  Condensation 226 drlsikldeeteeklrklakeqgvtlndvllaalgllLsk 265
                    ++ ++++  + ++l  +++++g++l+ + + +  + L  
    CCE28395.1 285 RTIPVSVPRGLLDRLLAACRSHGTSLTGLVHVLTLVSLTA 324
                   566778888999999***********99988877777754 PP

>> WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.3   1.2e-05     0.055      65     148 ..      98     196 ..      61     206 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
  WES_acyltransf  65 glaapvWvededfDldyHvRrvalpaPGterellelvsrLasspLDr......srPlWevhviE..GleggriA........illkvHHAliDGv 143
                      ++a+++   + +Dl +Hv  + l+   + +e  e++s L+++  D       +rP W + v+E  G +++ +         +++  HHAl DG 
      CCE28395.1  98 HTNAARFCHIPHVDLAHHVSFSTLHCNSE-QEYDEAISALHAQHHDQrfvdvaRRPAWRIEVVEaqGEAAQAFSraglraqdVVFAYHHALLDGT 191
                     3556778888999***********98765.***********98877523333469********955433333323345556689**********9 PP

  WES_acyltransf 144 gglkl 148
                     +g   
      CCE28395.1 192 SGRMF 196
                     99654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 4112.21
//
Query:       CCE28396.1  [L=725]
Description: uncharacterized protein CPUR_01871 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.2   1.2       0.19   11.4   1.2    1.2  1  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
       0.81   10.7   4.6         26    5.9   0.0    4.5  5  WD40        WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.2   2.1e-05      0.19     118     148 ..     636     673 ..     588     680 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.1e-05
                 --------------.......----------------- CS
  Cwf_Cwc_15 118 seeeeeeeeeesdd.......dsdsdsdddddedetae 148
                 s+ ++++++ ++++       d+++++ddddd+de a 
  CCE28396.1 636 SQPTKKQKRPSKSNtgpgpgaDDENENDDDDDDDEAAG 673
                 22222222222222456666577777777777777765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2   1.8e+04      24      35 ..     354     369 ..     341     370 .. 0.50
   2 ?    5.9   0.0    0.0029        26      12      38 .]     412     439 ..     402     439 .. 0.78
   3 ?   -0.3   0.3      0.26   2.3e+03       8      28 ..     451     472 ..     446     479 .. 0.75
   4 ?    0.4   0.0      0.16   1.4e+03      15      34 ..     552     571 ..     544     572 .. 0.84
   5 ?    0.9   0.0      0.11   9.7e+02      13      36 ..     689     715 ..     682     717 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
                 E......EEEEETTSEEE CS
        WD40  24 w......lasGsdDgtvr 35 
                        ++ ++ Dg v 
  CCE28396.1 354 AtkrymaVL-CG-DGRVC 369
                 233344444.67.88876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0029
                 SE..EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 sv..tslafspdgawlasGsdDgtvriWd 38 
                 sv  t++a+   +++++ G  Dg++ +W+
  CCE28396.1 412 SVkaTAMAWATFNRLVI-GYSDGSIALWS 439
                 56558998999999987.*55*******5 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.26
                 ESSSS.EEEEE.EETTSSEEEEE CS
        WD40   8 tGHss.vtsla.fspdgawlasG 28 
                   H s v +la  sp++++l+++
  CCE28396.1 451 VHH-SlVVDLAtASPSHPFLVAS 472
                 445.348899999******9865 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.16
                 EEEEETTSSEEEEEETTSEE CS
        WD40  15 slafspdgawlasGsdDgtv 34 
                 sla+ + +++l+ Gs Dg++
  CCE28396.1 552 SLAVGRTHPFLLVGSTDGSL 571
                 5667777899999*99**86 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.11
                 EEEEEEETTSSE...EEEEETTSEEEE CS
        WD40  13 vtslafspdgaw...lasGsdDgtvri 36 
                 vt + ++p+ ++    a+++  g vri
  CCE28396.1 689 VTTVEWNPNPQFgcwAAAATASGLVRI 715
                 999999999999777555555777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 5316.89
//
Query:       CCE28397.1  [L=338]
Description: related to PHO36 (regulatory role in lipid and phosphate metabolism) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-66  223.3  15.7    3.6e-66  223.1  15.7    1.1  1  HlyIII           Haemolysin-III related
  ------ inclusion threshold ------
      0.026   14.3   9.6      0.025   14.4   8.5    1.4  1  Bax1-I           Inhibitor of apoptosis-promoting Bax1
      0.051   13.7   0.8       0.13   12.3   0.8    2.0  1  DUF962           Protein of unknown function (DUF962)
       0.62    9.7   5.3        1.6    8.3   0.3    2.9  3  DUF4131          Domain of unknown function (DUF4131)
       0.62    9.8   5.0        1.2    8.9   0.8    2.6  2  DUF2157          Predicted membrane protein (DUF2157)
        2.7    7.3   8.3       0.85    8.9   3.1    2.1  2  TssN             Type VI secretion system, TssN
        4.3    7.3  10.2       0.31   11.0   0.2    2.8  2  NMN_transporter  Nicotinamide mononucleotide transporter


Domain annotation for each model (and alignments):
>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.1  15.7   1.4e-69   3.6e-66       1     224 []      92     316 ..      92     316 .. 0.94

  Alignments for each domain:
  == domain 1  score: 223.1 bits;  conditional E-value: 1.4e-69
      HlyIII   1 fslhnEtlniwtHllgailfivlailllslaevken..sklakvvvlvfllgallcllcSalyHtlsihseeklrkffaklDysgIslliagsylplil 97 
                 f lhnE++niw+Hl+ga+++++ a +++ +++      ++++++v+++f+ ga+lcl++Sa+yH ls hs+  + k+ +klDy+gI++li+gsy+p+++
  CCE28397.1  92 FYLHNESVNIWSHLVGALVAVACAAYVYYVIHPRYEeaTSSDVFVFACFFTGAILCLGMSATYHALSDHSQ-AVAKWGNKLDYTGIVALIVGSYVPPMY 189
                 789****************9988876666666555555999*****************************9.9************************** PP

      HlyIII  98 yalakapkagllylslilalgvlgiisklvplfsrpearplravlfillgllgvipllhlllvltqlgeaa.elalvllvlggvlylvGavfYalrvPE 195
                 y ++++p ++ +yl li++lg  + ++++v +f++p++rp+ra++fi lgl+gv+p++h  +++++ +    ++ + l++++g++y++Gav+Ya+r+PE
  CCE28397.1 190 YGFFCRPVLMSTYLYLICMLGAGCGVVSWVERFRTPKWRPYRASMFIGLGLSGVVPVIH-GVTIYGYSGLEnRMSISLVIAQGAMYIIGAVLYAMRWPE 287
                 ***********************************************************.6666656655569************************** PP

      HlyIII 196 rlkpgkfdivghsHqiFHvfvvlgalfhy 224
                 r  pg+fdi+g+sHqiFH+fv+l+a+ h+
  CCE28397.1 288 RSSPGSFDIWGSSHQIFHMFVLLAAATHF 316
                 **************************996 PP

>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   8.5   9.9e-06     0.025       6     164 ..     100     277 ..      99     285 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.9e-06
      Bax1-I   6 kvYgllalgllltalvaavvlsspa..qlflslhivlflvvilaplalv.flslsaarlkkkssala.lallllftlleGlslspil.lvyt....gai 95 
                 +++++l+++l+  a++a+v++ + +  +  +s ++++f +++ + ++++ + s   ++l ++s+a+a ++  l +t++ +l++++++  +y       +
  CCE28397.1 100 NIWSHLVGALVAVACAAYVYYVIHPryEEATSSDVFVFACFFTGAILCLgM-SATYHALSDHSQAVAkWGNKLDYTGIVALIVGSYVpPMYYgffcRPV 197
                 578899999999999999998888899555555555555544444444434.3334467788888777999999*******999976234547999777 PP

      Bax1-I  96 ilqa.flltaaifgglslyalttkrdlsglggflfagligliiaslvnlF..........lpssalelaisylgvllfsg 164
                 ++++ + l +++ +g+ ++ ++ + +  ++ ++ ++++igl ++++v ++          l  +++  ++++ g++   g
  CCE28397.1 198 LMSTyLYLICMLGAGCGVVSWVERFRTPKWRPYRASMFIGLGLSGVVPVIhgvtiygysgLENRMSISLVIAQGAMYIIG 277
                 77773668888899999999999***99*******************988454444443332333222223334444444 PP

>> DUF962  Protein of unknown function (DUF962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.8   5.2e-05      0.13      14      61 ..      94     143 ..      82     320 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.2e-05
      DUF962  14 eHsnpinrllHfigvplilltvlllllrak..lklllalfvvgyifafvG 61 
                  H++ +n++ H++g  +++++++++ + ++  ++ ++ + v+ +++ f G
  CCE28397.1  94 LHNESVNIWSHLVGALVAVACAAYVYYVIHprYEEATSSDVFVFACFFTG 143
                 5******************9999987776644344444444444444444 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.54   1.4e+03      92     116 ..      40      64 ..      36      67 .. 0.87
   2 ?    8.3   0.3   0.00064       1.6       4      74 ..     100     176 ..      97     183 .. 0.63
   3 ?    2.1   0.4     0.051   1.3e+02       6      64 ..     202     263 ..     197     282 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.54
     DUF4131  92 vervlsagktkpvsgrvlvtvpksp 116
                 +++++++gk +++s r+l+ +++ p
  CCE28397.1  40 AQSLPRKGKAEKASSRLLLLWDDLP 64 
                 5678999************999876 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00064
     DUF4131   4 plalvllalllllllllllllrrrprrrv.......llllllllllallgfalrapqpnandlsqlles.gqeviveGv 74 
                 +++  l+++l+++++++++++    ++r+        ++++ ++  a l++  +a +++ +d sq++ + g++  ++G 
  CCE28397.1 100 NIWSHLVGALVAVACAAYVYY--VIHPRYeeatssdVFVFACFFTGAILCLGMSATYHALSDHSQAVAKwGNKLDYTGI 176
                 567889999999999999999..55555556666654555555555555555555555555556555555555555555 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.051
     DUF4131   6 alvllalllllllllllllrr...rprrrvllllllllllallgfalrapqpnandlsqlle 64 
                 +l l+++l++ + +  ++ r+   ++r+ ++ +++ l l +++ + + +   + + l++ ++
  CCE28397.1 202 YLYLICMLGAGCGVVSWVERFrtpKWRPYRASMFIGLGLSGVVPVIHGVTIYGYSGLENRMS 263
                 45566666666666666655588888888888888888888877766666666666666665 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.8   0.00047       1.2      70     131 ..     105     168 ..      99     171 .. 0.83
   2 ?    2.0   0.2     0.065   1.7e+02      66     109 ..     261     312 ..     200     320 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00047
     DUF2157  70 llvllllslllg.avlwrdrrvpprlgeallllaalllgaaial.vgqifqlsgdaysllllwa 131
                 l+++l+++++++ ++   ++r +++++  + ++a++  ga + l ++ +++  +d +++++ w+
  CCE28397.1 105 LVGALVAVACAAyVYYVIHPRYEEATSSDVFVFACFFTGAILCLgMSATYHALSDHSQAVAKWG 168
                 5667777777775555556699999999999999999999998879**************9996 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.065
     DUF2157  66 kfllllvllllslllg.avlwrdr.......rvpprlgeallllaalllgaa 109
                 ++ + lv++ ++++++ avl+  r        +++ +g    +++ ++l+aa
  CCE28397.1 261 RMSISLVIAQGAMYIIgAVLYAMRwpersspGSFDIWGSSHQIFHMFVLLAA 312
                 4444444444444444466666556677778666666766667776666665 PP

>> TssN  Type VI secretion system, TssN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.1   0.00033      0.85      48     114 ..      90     156 ..      82     206 .. 0.74
   2 ?    1.0   0.5     0.086   2.2e+02      91     143 ..     261     314 ..     201     322 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00033
        TssN  48 gllgflknefvpygyillqilylllGilhlylllkkffkelkekkilfeilltlivillglvlfvlv 114
                 +l+ + + +++ ++ ++  ++++    +  y+++ ++ ++ +++ ++f +++t  +++lg+   ++ 
  CCE28397.1  90 SLFYLHNESVNIWSHLVGALVAVACAAYVYYVIHPRYEEATSSDVFVFACFFTGAILCLGMSATYHA 156
                 55555555666778888888888888888999****************************9876543 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.086
        TssN  91 kkilfeilltlivillglvlfvlvf.nllselqygvwaatsllvfiipllflkt 143
                 +  +  ++    + ++g+vl+ +   ++ s  ++ +w +++ ++ +++ll   t
  CCE28397.1 261 RMSISLVIAQGAMYIIGAVLYAMRWpERSSPGSFDIWGSSHQIFHMFVLLAAAT 314
                 334444555667788888888875525566666888888888888888776655 PP

>> NMN_transporter  Nicotinamide mononucleotide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00012      0.31      75     126 ..      97     147 ..      66     154 .. 0.83
   2 ?    1.7   0.4     0.086   2.2e+02      33      99 ..     250     319 ..     239     328 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
  NMN_transporter  75 rkltkkewlilllvivlgtallgfllkaltdaalpvlDafttvlsivaqllm 126
                      ++++ +++l+ +lv+v+++a ++++++ +  ++    D+f++++++++ +l+
       CCE28397.1  97 ESVNIWSHLVGALVAVACAAYVYYVIHPR-YEEATSSDVFVFACFFTGAILC 147
                      56788999999999999999899999984.5666789***********9986 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.086
  NMN_transporter  33 vllyivvffqagl.ygdallq.lfyivmsiyGwirWsknkkk.av.rkltkkewlilllvivlgtallgfl 99 
                      v++y++  +++++ ++ ++ q ++yi+ ++   +rW ++ +  +   + ++ +++ ++++++++t  ++ +
       CCE28397.1 250 VTIYGYSGLENRMsISLVIAQgAMYIIGAVLYAMRWPERSSPgSFdIWGSSHQIFHMFVLLAAATH-FYGM 319
                      555555555555422333333145555666666778765544424346666666667776666666.4433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2564.20
//
Query:       CCE28398.1  [L=75]
Description: uncharacterized protein CPUR_01873 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-17   64.3  16.1    1.6e-17   64.1  16.1    1.0  1  TMA7      Translation machinery associated TMA7


Domain annotation for each model (and alignments):
>> TMA7  Translation machinery associated TMA7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1  16.1   8.8e-22   1.6e-17       1      62 []       5      75 .]       5      75 .] 0.97

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 8.8e-22
        TMA7  1 greGGKkkPLKapKkkkk.el.....DeeDlafkqkqkeeekalkelkakaag.kGplggg..GiKKSgKK 62
                +r++G+++PLK++K+k++ ++     De+Dl++++ +k++++++kel++++ag kGpl++g  GiKKSgKK
  CCE28398.1  5 NRQNGTAAPLKKAKDKNNvDRrgqspDEDDLRAQEARKKADAQKKELAKQIAGkKGPLNTGsqGIKKSGKK 75
                7****************97779*******************************9****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1212  (0.0676); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 595.56
//
Query:       CCE28399.1  [L=833]
Description: uncharacterized protein CPUR_01874 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-53  180.8   0.1    4.4e-53  180.3   0.1    1.2  1  Pkinase          Protein kinase domain
    2.1e-24   86.2   0.1    1.6e-23   83.3   0.0    2.0  2  Pkinase_Tyr      Protein tyrosine kinase
  ------ inclusion threshold ------
      0.061   12.9   0.1       0.13   11.8   0.1    1.5  1  RIO1             RIO1 family
      0.096   11.6   0.1       0.15   11.0   0.1    1.2  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.3   0.1   9.9e-57   4.4e-53       1     264 []     501     822 ..     501     822 .. 0.91

  Alignments for each domain:
  == domain 1  score: 180.3 bits;  conditional E-value: 9.9e-57
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS......CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH... CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk......hpnivrlyevfeekdelylvleyveggeladlle... 90 
                 y+ + +lG+G f+ V++av+ ++++ivA+K++++++a  k      +Ei+il+kl+       ++iv++ + f +k +l++ +e ++ + l ++l+   
  CCE28399.1 501 YQIQATLGRGMFSGVVRAVDISSKQIVAIKMMRNNDALRKGG---YTEIAILQKLNaadvenRKHIVKFERHFDHKGHLCMAFENLSMN-LREVLRkfg 595
                 678899*****************************9998665...99*******99877766799*********************977.999999887 PP

                 HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHH CS
     Pkinase  91 rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesssk....ltsfvgtseYlAPEvlkeneyskkvDvWslG 184
                 +++ ++ + ++ +a+q + +l+++ + +iiH DlKp+NiL++ ++++lKi+D+G a   +   +     t + +++ Y+APE++ + +y+  vD+Ws+G
  CCE28399.1 596 NNVGINLAATRTYAYQAFVALAHMRKCSIIHADLKPDNILVNeQHNVLKICDLGTAIDRSDAATahtqITPYLVSRFYRAPEIILGMPYDYGVDMWSIG 694
                 8888**************************************66777*********988877777777999**************************** PP

                 HHHHHHHHSS-STTTSSHHHHHHHHHHT.HHHHHHHCTSHH...HHHTTS...............................................-H CS
     Pkinase 185 vilyelltgkppfsgekgkekvekeldq.lekilkilgetkeklpeasei...............................................se 235
                 ++lyel+tgk +f+g+++++  +++++   + + k+++  +++ ++ +e                                                 +
  CCE28399.1 695 CTLYELYTGKILFAGDSNNQMLKAIMEVrGKFTPKLFRRGQLSAAHFDEQghfvsverdkvlgktamrtmavvkptrdlrtrlnaastgmndaearhLN 793
                 **************777777444444334455667777777777777777999*******************************************999 PP

                 HHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 236 eakdllkkllkkdpkkRltaeellqhpyl 264
                 +++dll+++l+ +p kR+ta+e+l+hp++
  CCE28399.1 794 HFIDLLEQCLALNPDKRITASEALKHPFF 822
                 ****************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   3.6e-27   1.6e-23       2     220 ..     502     721 ..     501     732 .. 0.83
   2 ?    0.5   0.0     0.069   3.1e+02     230     254 ..     791     815 ..     766     819 .. 0.80

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 3.6e-27
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-......BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklk......hpnivkllgvctkeepllivteyvkgGdLlkfLr 93 
                  +++ +lG+G f+ Vv++       ++++ Va+K+++++   +  +  ++e++i++kl+       ++ivk+     ++++l++ +e ++  +L++ Lr
   CCE28399.1 502 QIQATLGRGMFSGVVRAVDI----SSKQIVAIKMMRNNDALR--KGGYTEIAILQKLNaadvenRKHIVKFERHFDHKGHLCMAFENLSM-NLREVLR 592
                  57899************988....88999******7655544..666777777777641122216788888888889999***9999987.8****** PP

                  HT.CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEE.EETTSSTSGGGGS-HHHHHHSEEEHHHHH CS
  Pkinase_Tyr  94 kk.ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddey.vkkeeaklpvkWmapEslkekkftsksDv 188
                  k  ++  ++l  +  +a+q   +++++ + +++H dl   N+L++e++ v ki+D G a d ++  +  ++ +   ++  + apE++  + +    D+
   CCE28399.1 593 KFgNNVGINLAATRTYAYQAFVALAHMRKCSIIHADLKPDNILVNEQHnVLKICDLGTAIDRSDAATAhTQITPYLVSRFYRAPEIILGMPYDYGVDM 690
                  97345568889999*******************************976488**********966666624444555666778**************** PP

                  HHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHT CS
  Pkinase_Tyr 189 WsfGvllwEiftlgespypglkneevleklke 220
                  Ws G +l+E++t g+  ++g +n+++l+++ e
   CCE28399.1 691 WSIGCTLYELYT-GKILFAGDSNNQMLKAIME 721
                  ************.************9999865 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.069
                  SBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 230 cpeelyelmkkcweedpeeRptfse 254
                    +++ +l+++c++ +p++R t se
   CCE28399.1 791 HLNHFIDLLEQCLALNPDKRITASE 815
                  4567889*************99877 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.9e-05      0.13     119     155 ..     616     654 ..     596     662 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.9e-05
                 HHHHHTSTEEESS-STTSEEEETT..EEEE--GTTEEET CS
        RIO1 119 rklykeaglvHaDLSeyNvlvded..kvviIDvsQavel 155
                  + ++++ ++HaDL   N+lv+e+   + i D++ a++ 
  CCE28399.1 616 LAHMRKCSIIHADLKPDNILVNEQhnVLKICDLGTAIDR 654
                 345679****************99523346788777765 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.3e-05      0.15     296     321 ..     621     645 ..     611     652 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.3e-05
  Pox_ser-thr_kin 296 dcenflhvDlkPdniLifdskeklii 321
                      +c+  +h+DlkPdniL+ ++++ l+i
       CCE28399.1 621 KCS-IIHADLKPDNILVNEQHNVLKI 645
                      454.59***********999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 5269.06
//
Query:       CCE28400.1  [L=77]
Description: uncharacterized protein CPUR_01875 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 605.98
//
Query:       CCE28401.1  [L=510]
Description: related to VHS1-protein kinase involved in G1/S transition [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-50  170.3   0.0    7.1e-50  169.8   0.0    1.1  1  Pkinase          Protein kinase domain
    6.1e-30  104.4   0.0    7.9e-30  104.0   0.0    1.1  1  Pkinase_Tyr      Protein tyrosine kinase
     0.0011   18.3   0.0     0.0032   16.9   0.0    1.6  2  Kinase-like      Kinase-like
     0.0093   15.3   0.0      0.014   14.7   0.0    1.2  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.039   13.9   0.0    1.6  1  APH              Phosphotransferase enzyme family
       0.03   14.0   0.0        2.7    7.6   0.0    2.2  2  FTA2             Kinetochore Sim4 complex subunit FTA2
       0.15   10.8   0.0       0.21   10.3   0.0    1.1  1  Pkinase_fungal   Fungal protein kinase
       0.16   10.9   0.0       0.25   10.2   0.0    1.2  1  Haspin_kinase    Haspin like kinase domain
       0.21   10.5   0.1       0.33    9.9   0.1    1.2  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   0.0   3.6e-53   7.1e-50       3     258 ..      58     315 ..      56     319 .. 0.83

  Alignments for each domain:
  == domain 1  score: 169.8 bits;  conditional E-value: 3.6e-53
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.....HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS. CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke.....kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgs. 94 
                   e lG+G++G+Vy+a++  tg  +AvK+++k + + +       +  +rEi+++   + hpniv l++++ + d +++vley+++g+l+  +++ g  
  CCE28401.1  58 LTEILGTGAYGVVYSALDMVTGIRYAVKCLSKFNPDGTPLerrqiDYQQREIRLHYMASaHPNIVSLLKIIDDADCIFVVLEYCPEGDLFMNITELGYy 156
                 5789***************************987765544455677789*******9999****************************99999966664 PP

                 --HH.HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH....TTSCB.SHHHHHHHHHHH CS
     Pkinase  95 lsee.eakkiakqilegleylHskgiiHrDlKpeNiLidekge.lKitDFGlakelessskltsfvgtseYlAPEvl....keney.skkvDvWslGvi 186
                 +  +   +k++ qi+ ++e++Hs +i HrDlKpeNiL+++ g+ +K++DFGla+  ++ss  +  +g+  Y++PE l    +++ y  ++ DvWslGvi
  CCE28401.1 157 VGRDeLSRKVFLQIVDAVEHCHSLSIYHRDLKPENILVSDGGNtVKLADFGLATSDDHSS--DYGCGSTFYMSPECLdtsaNNSYYmCAPNDVWSLGVI 253
                 55551567*******************************66667*********9988877..999************998544555799********** PP

                 HHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 187 lyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeel 258
                 l++l++g++p+++ + ++   + ++ + ++   l        +   + +e+ ++l ++++ +p  R+t ++l
  CCE28401.1 254 LVNLTCGRNPWKQASFQD---ATYRAFIRSPAFL-------MTILPLTDELNEILARIFNPNPDLRITLADL 315
                 ************555444...3333322223322.......2233468999999999999999999998776 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.0     4e-33   7.9e-30       1     258 [.      56     318 ..      56     319 .. 0.83

  Alignments for each domain:
  == domain 1  score: 104.0 bits;  conditional E-value: 4e-33
                  EEEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST......TSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHH CS
  Pkinase_Tyr   1 lelgkklGeGafGkVvegtlkgekekkevkVavKtlke......eateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkf 91 
                  l+l++ lG Ga+G V+++        + ++ avK+l++        ++++ +   +e+++      hpniv+ll ++ +++ +++v+ey+++GdL   
   CCE28401.1  56 LQLTEILGTGAYGVVYSALDM----VTGIRYAVKCLSKfnpdgtPLERRQIDYQQREIRLHYMAsAHPNIVSLLKIIDDADCIFVVLEYCPEGDLFMN 149
                  67899*************988....78888888888652222212233334445669998877789******************************** PP

                  HHHTCTTTSBHHHH.HHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.....E CS
  Pkinase_Tyr  92 Lrkkekekltlkdl.lsfalqvAkGmeyLeskklvHrdlaarNvLlse.nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.....f 182
                  +++     +  ++l  ++ lq+ +++e+ +s ++ Hrdl   N+L+s+ +++vk++DfGLa +  ++++y     +  +  +m+pE+l+++      +
   CCE28401.1 150 ITEL-GYYVGRDELsRKVFLQIVDAVEHCHSLSIYHRDLKPENILVSDgGNTVKLADFGLATSDDHSSDY-----GCGSTFYMSPECLDTSAnnsyyM 241
                  ***9.666666655157999***************************9456**********988555555.....556689*******9998777655 PP

                  EHHHHHHHHHHHHHHHHTTSSGTTTTS..HHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  Pkinase_Tyr 183 tsksDvWsfGvllwEiftlgespypgl..kneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselvek 258
                      DvWs Gv+l  + + g++p+++   ++++  +++++   l +    ++el+e++ + ++ +p+ R t+++l+++
   CCE28401.1 242 CAPNDVWSLGVILVNLTC-GRNPWKQAsfQDATYRAFIRSPAFLMTILPLTDELNEILARIFNPNPDLRITLADLRRR 318
                  5678***********998.*****999545555667779999999999************************999875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.95   1.9e+03      13      46 ..      55      88 ..      53     118 .. 0.81
   2 !   16.9   0.0   1.6e-06    0.0032     144     252 ..     162     266 ..     152     307 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.95
  Kinase-like 13 tlvrgellkkgdrsvvfevkdqetgeplavkvfl 46
                 tl   e+l+ g  +vv+ + d  tg   avk  +
   CCE28401.1 55 TLQLTEILGTGAYGVVYSALDMVTGIRYAVKCLS 88
                 577789999************9999999998654 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.6e-06
  Kinase-like 144 iarlllTlqlirlaanLqakglvhgkftvdnllldekgg.lmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlvi 240
                  ++r++  lq++  + + +++ + h +++++n+l    g  ++l +f+    + ++         +  pE l   +     n   m  + d+W lG+  
   CCE28401.1 162 LSRKVF-LQIVDAVEHCHSLSIYHRDLKPENILVSDGGNtVKLADFGLATSDDHSSDYGCGSTFYMSPECLDTSAN----NSYYMCAPNDVWSLGVIL 254
                  677777.9************************999888449*****977777766664555566789999999655....9999************** PP

  Kinase-like 241 yriwclklPltl 252
                    + c   P  +
   CCE28401.1 255 VNLTCGRNPWKQ 266
                  *****9998765 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.2e-06     0.014     117     166 ..     160     206 ..     147     212 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.2e-06
         Kdo 117 eelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 +el r+ + ++  +++  h++ ++H+dl + nil+  ++    ++ l D+
  CCE28401.1 160 DELSRKVFLQIVDAVEHCHSLSIYHRDLKPENILVSDGG---NTVKLADF 206
                 678889999999***********************9997...56666666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.9e-05     0.039     166     207 ..     180     220 ..     158     233 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHC CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlav 207
                  ++ H+Dl+p N+lv ++++ v  + Df++a+  +   D + 
  CCE28401.1 180 LSIYHRDLKPENILVSDGGNTV-KLADFGLATSDDHSSDYGC 220
                 6789************666666.799*****99988888765 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.014        28      22      75 ..      54     107 ..      37     120 .. 0.74
   2 ?    7.6   0.0    0.0013       2.7     170     204 ..     159     193 ..     146     210 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.014
        FTA2  22 kdiefleyLgkglhsiVlkv..kirgkeYALKlFrfleaeeleeaeedlkipreal 75 
                  + ++ e+Lg g+ ++V+ +   + g  YA+K   +++++ +    e+ +i+++++
  CCE28401.1  54 GTLQLTEILGTGAYGVVYSAldMVTGIRYAVKCLSKFNPDGTP--LERRQIDYQQR 107
                 568999************9965699*******99999776553..33333333333 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0013
        FTA2 170 qeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                  +el+ + + ++++ ++  h+l I++rDlk+en++
  CCE28401.1 159 RDELSRKVFLQIVDAVEHCHSLSIYHRDLKPENIL 193
                 67788899999**********************97 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00011      0.21     298     387 ..     156     232 ..     146     241 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
  Pkinase_fungal 298 piekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlk 387
                      + + e  ++++  + Da++   sL     i HrD   +Nil+     +g+++  L+D+ la++ ++ ss     +  G + +m+ e l 
      CCE28401.1 156 YVGRDELSRKVFLQIVDAVEHCHSLS----IYHRDLKPENILVS----DGGNTVKLADFGLATSDDH-SS----DYGCGSTFYMSPECLD 232
                     55566666677777889999999998....*************9....7899**********99885.22....3567888888777665 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00013      0.25     210     255 ..     165     261 ..     160     277 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00013
  Haspin_kinase 210 sifwqivkiLyvaEtkfeFEHRdLhldniLvdkn....................................................lnvtlidlkl 253
                    ++f qiv  +     ++   HRdL+ +niLv +                                                     l v+l++l++
     CCE28401.1 165 KVFLQIVDAVEHC-HSLSIYHRDLKPENILVSDGgntvkladfglatsddhssdygcgstfymspecldtsannsyymcapndvwsLGVILVNLTC 259
                    6777777776655.578999***********99865666666666666666666666666666666666666666666666666665666666666 PP

  Haspin_kinase 254 sR 255
                    +R
     CCE28401.1 260 GR 261
                    65 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00017      0.33     266     318 ..     151     200 ..     120     206 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00017
  Pox_ser-thr_kin 266 aelGf.aslveyikfifLqiaLLyikiyelpdcenflhvDlkPdniLifdskek 318
                      +elG+ +   e  + +fLqi+       e        h DlkP+niL+ d  + 
       CCE28401.1 151 TELGYyVGRDELSRKVFLQIVDAV----EHCHSLSIYHRDLKPENILVSDGGNT 200
                      445541456778888999886543....444455688***********987554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3687.70
//
Query:       CCE28402.1  [L=262]
Description: uncharacterized protein CPUR_01877 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-05   23.6   0.1    5.7e-05   22.4   0.1    1.6  1  SKG6      Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   3.2e-09   5.7e-05       7      38 .]     186     217 ..     180     218 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 3.2e-09
        SKG6   7 sntvaIavaVaVPVaViiivLlailifvrRRk 38 
                 +++  I+v+V++P++  ++  +a li+v RR+
  CCE28402.1 186 NTALKIGVGVGIPLGLLALGACAALIVVLRRR 217
                 66777**********************98885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1076  (0.0600145); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1868.47
//
Query:       CCE28403.1  [L=690]
Description: probable acetolactate synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-54  183.9   0.1    8.1e-54  181.8   0.0    2.1  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    3.6e-47  160.0   0.8    1.6e-44  151.3   0.1    3.2  3  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    6.9e-40  136.0   0.3    2.6e-39  134.1   0.2    2.1  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.8   0.0   1.4e-57   8.1e-54       2     164 ..      90     251 ..      89     255 .. 0.99
   2 ?   -1.7   0.0      0.32   1.9e+03      83     140 ..     562     631 ..     555     648 .. 0.53

  Alignments for each domain:
  == domain 1  score: 181.8 bits;  conditional E-value: 1.4e-57
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   t++e++ +++ +++v+h+fg+pG+ ilp++da+ +++ +++++ rhEqga+++A+gyara+gkpgvvlvtsgpGatn++t + +A +d++Pl+v++g
    CCE28403.1  90 TGGEIFHEMMLRQNVKHIFGYPGGAILPVFDAIYNSKHFDFIVPRHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVITPMQDALSDGTPLVVFCG 186
                   899********************************************************************************************** PP

                   E--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHC CS
  TPP_enzyme_N  99 drptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvl 164
                   ++pt+ +g +++q e d +++ r +tk+++ v++++elp+ + +A+++a+sgrpgPv+++lpkdv 
    CCE28403.1 187 QVPTTAIGSDAFQ-EADVVGISRACTKWNVMVKNVAELPRRINEAFEIATSGRPGPVLVDLPKDVT 251
                   *************.**************************************************96 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.32
                   HHHHHHHT--EEEEEEE--CCCHH............S..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHH CS
  TPP_enzyme_N  83 laeAkvdriPllvlsgdrptslrg............qgvlqqeldqlalfrpvtkyaervtspeelpeal 140
                   la+A++ +i + +++ ++++                 ++ q + d ++l++++   ++r+ +p++++e+l
    CCE28403.1 562 LATASQFNIGVKIIVLNNEELGMVtqaqnffyedryAHTHQVNPDFVKLAESMRIQSRRLVNPADTVEYL 631
                   5555555555555544444333333333333333335555544477777777766677777776666665 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.017     1e+02     107     152 ..     197     245 ..     182     246 .. 0.73
   2 ?    2.6   0.1     0.017     1e+02      59     122 ..     352     421 ..     350     438 .. 0.76
   3 !  151.3   0.1   2.7e-48   1.6e-44       1     153 []     498     645 ..     498     645 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.017
                   BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHH.....CSSSEEEEE CS
  TPP_enzyme_C 107 dlkpvdfaklaealGakgarvekadveeleealkeal.....ekkgpalie 152
                    +++ d++ + +a+      v +++v+el + + ea+      + gp+l++
    CCE28403.1 197 AFQEADVVGISRACTKW--NVMVKNVAELPRRINEAFeiatsGRPGPVLVD 245
                   37778888888888333..55567779999999999888878899999998 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.017
                   HHTGGGHHHHHHTT-SEEEEE...EE-SBCCCHHHH...HHHHTCCTTTTSBB.BS----HHHHHHHTTS CS
  TPP_enzyme_C  59 lmilqelatavrrnlpitvvv...lnNegygmtggq...qepfggkrksgpagkdlkpvdfaklaealGa 122
                    m+++++a+++ + +++++ +   ++N+++g++ +     + + ++++ g  + + +p+++ k+++a +a
    CCE28403.1 352 GMHGSAYANMAMQEADLIIALgsrFDNRVTGNIAQFapgAKAAAAQKRGGIVHFEIMPKNINKVVQATEA 421
                   6889999999999999999987778*********997764455555555555557788888888888754 PP

  == domain 3  score: 151.3 bits;  conditional E-value: 2.7e-48
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   ++G++++w+a++++ + prs++tsgglgtmGyglpaAiGak+a+pd+ v+ i GD +f m+l+elata + n+ ++++vlnNe +gm+ + q+ f++
    CCE28403.1 498 GVGQHQMWTAQHFRWRHPRSMITSGGLGTMGYGLPAAIGAKVAQPDALVIDIDGDASFCMTLTELATASQFNIGVKIIVLNNEELGMVTQAQNFFYE 594
                   69*********************************************************************************************** PP

                   CTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  98 krksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                   +r+++++   + ++df+klae++ ++  r+ ++  +++ e l + ++++gpal+ev
    CCE28403.1 595 DRYAHTH---QVNPDFVKLAESMRIQSRRLVNP--ADTVEYLTWLINSDGPALLEV 645
                   *****99...8899************9986666..*******************97 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.53   3.1e+03      51      81 ..     174     204 ..     167     206 .. 0.74
   2 !  134.1   0.2   4.4e-43   2.6e-39       1     136 [.     288     432 ..     288     433 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.53
                   SS-TTSTTEEEESGGGSCHHHHHHHHH-SEE CS
  TPP_enzyme_M  51 vipedhplylgmlglhgskaanealeeaDlv 81 
                   ++++  pl +    +  ++ +++a++eaD+v
    CCE28403.1 174 ALSDGTPLVVFCGQVPTTAIGSDAFQEADVV 204
                   6666777776666666678899999****98 PP

  == domain 2  score: 134.1 bits;  conditional E-value: 4.4e-43
                   HHHHHHHHHH-SSEEEEE-CHHCHT.TGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvars.gaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgs 96 
                   i+++ael + ak+pvi++G+g+ +s +  + l+el+ek+ iPv+ttl+g g ++e ++++l+mlg+hgs++an+a++eaDl++alG+rfd+ r+tg+
    CCE28403.1 288 IKRVAELFNIAKQPVIYAGQGIVQSeDGPALLKELSEKCSIPVTTTLHGLGGFDELDEKSLHMLGMHGSAYANMAMQEADLIIALGSRFDN-RVTGN 383
                   799*******************99978**************************************************************99.***** PP

                   TTTTTTT-E.........EEEEESSCCCCTTCC--SEEEECTHHHHHHH CS
  TPP_enzyme_M  97 epefapeak.........iihididpaeigknyqvdlaivgdvketlea 136
                     +fap ak         i+h++i p++i+k++q++ ai gdv+++++ 
    CCE28403.1 384 IAQFAPGAKaaaaqkrggIVHFEIMPKNINKVVQATEAIEGDVAASMKL 432
                   ******987788888999**************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4687.37
//
Query:       CCE28404.1  [L=511]
Description: related to GIT1-Glycerophosphoinositol transporter also able to mediate low-affinity phosphate trans [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-29  101.2  32.1    5.2e-16   58.6   9.7    2.0  2  Sugar_tr        Sugar (and other) transporter
    1.5e-17   63.5  40.5    2.9e-10   39.6  22.4    2.1  2  MFS_1           Major Facilitator Superfamily
  ------ inclusion threshold ------
        6.7    7.1  16.7       0.68   10.2   0.7    4.3  4  Transgly_assoc  Transglycosylase associated protein


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   9.7   8.6e-20   5.2e-16       8     193 ..      44     234 ..      38     248 .. 0.90
   2 !   51.1  12.5   1.5e-17   9.2e-14     242     449 ..     249     460 ..     233     463 .. 0.82

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 8.6e-20
                 HH.HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT....SS CS
    Sugar_tr   8 gg.llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk....ns 101
                 +g +  gY   vig++ t+lk +++  +++s+++k+        ++ ++++G ++G+l++g+  d ++R ++l++++ +++  ++l a +  k     +
  CCE28404.1  44 AGlFSDGYINNVIGSVNTILKLQYKSVYKNSNAAKY--------VADVAFAGTVVGQLLFGFTCDHWSRMNTLMVSTGILILFTALAAGSYYKgepvGM 134
                 45588899999**********999999999999776........9*********************************************97799*9** PP

                 -TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHH....HHHHHHHHHHHHHHHHHHHHHHH.HTSS-...TTHHHHHHHCCHHHHHHHHHHGGGS- CS
    Sugar_tr 102 vevlivgRvlvGigvGlasvlvPmyisEiApkklRga....lvslyqlaitfGilvaaifglgl.nktsn...adgwrillglqlvpallllilllflP 192
                 + +l++ R++vGig+G+++   ++ ++E + + + g+    ++ +++++i +G++++a++ + + + +++   ++ wr  lg+ ++++l+l+++++ l 
  CCE28404.1 135 FNMLAAWRFFVGIGIGGEYPAGSVSCAESTGELKSGTrhrwFILFTNTMIDWGFVFGAFVPYLVaAACHSshlETIWRTSLGIGVIFPLILFVMRMRLK 233
                 ******************************666666522225667899****************8888889999*******************999887 PP

                 - CS
    Sugar_tr 193 E 193
                 E
  CCE28404.1 234 E 234
                 7 PP

  == domain 2  score: 51.1 bits;  conditional E-value: 1.5e-17
                 HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH.....HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 242 wkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks.....llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg 335
                 +  +l+   + +rl+ + +++++  +++  a+ +ys+ i+  +  ++      + ++ ++ +     t+ ++f++d +G +++l+ G+++++++  i++
  CCE28404.1 249 YLLVLR--FYWWRLFCVSLIWFVYDFST-YAFGIYSSDILAGIYGDEAplttvFGWNTVINMFYLPGTILGAFVSDWIGPKYTLIGGVVVQSLVGYIMA 344
                 333333..38899999999999999999.67778888888776666666655588888888888889*******************************9 PP

                 ..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH......T-HHHHHHHHHHHH CS
    Sugar_tr 336 ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig......ggyvflvfaglavl 428
                   ++   +++     ++ +++ +f+ l +lg+g  + +l++ +  ++vR+  + ia av  +  f+ +++fp+i+ a g      + y f+v  +l++l
  CCE28404.1 345 -GVYGSIKNH---IAGFAILYGIFLTLGELGPGNNIGLLAAKTCATGVRGRYYGIASAVGKVGAFVGTFVFPYIQAAGGegtvqsAQYPFWVASSLCIL 439
                 .555555554...3444445556778*****************************************************99**9999************ PP

                 HHHHHHHHS--STT--CCCCG CS
    Sugar_tr 429 fiifvfffvpetkgrtleeie 449
                 ++++ fff+p     t+ e +
  CCE28404.1 440 SAVVAFFFIPNVSQDTIAEED 460
                 **********99998887755 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6  22.4   4.8e-14   2.9e-10      35     259 ..      78     318 ..      42     319 .. 0.76
   2 !   31.4  15.8   1.5e-11   8.9e-08      33     188 ..     298     462 ..     296     490 .. 0.82

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 4.8e-14
       MFS_1  35 gllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll...fa....sslw.lllvlrvlqGlgagalfpagaaliadwfpke...ergra 122
                   ++ + ++g++v++l++G+  d ++r  +l+++  +++l+ ++l+   +      +++ +l++ r++ G+g g+ +pag +  a+ + +     r r 
  CCE28404.1  78 KYVADVAFAGTVVGQLLFGFTCDHWSRMNTLMVSTGILILF-TALAagsYYkgepVGMFnMLAAWRFFVGIGIGGEYPAGSVSCAESTGELksgTRHRW 175
                 455667799****************8888************.444413531345667888****************************99524433333 PP

       MFS_1 123 i.gllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp..awkallkdpvlwi 211
                 +  + ++++  G+++g+ +  l+a++         Wr +  i  i+ l++fv+     + ep e +++s ++      p  lv    w  l+    +w 
  CCE28404.1 176 FiLFTNTMIDWGFVFGAFVPYLVAAACHsshletiWRTSLGIGVIFPLILFVM--RMRLKEPEEFSKESMRKN----TPYLLVLrfYWWRLFCVSLIW- 267
                 314555677788888877777666555567789*****************997..888888888888888888....777777789777777777799. PP

       MFS_1 212 llialllfffgfsglltllply.....lqevlglsglllaglllallalvgai 259
                 +++ + + +fg+++  +l  +y     l +v+g+++ +++  ++  + ++ga+
  CCE28404.1 268 FVYDFSTYAFGIYSSDILAGIYgdeapLTTVFGWNT-VINM-FYLPGTILGAF 318
                 9999999999999988888888888889*******4.4444.47777777765 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 1.5e-11
       MFS_1  33 eigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fa...sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigl 125
                 ++g+ +++ + +++ ++++++++sd +G++ +l+ g+++ +l +++++  ++   +++  + ++  ++  lg+ +   +++ l+a+  +   rgr++g+
  CCE28404.1 298 VFGWNTVINM-FYLPGTILGAFVSDWIGPKYTLIGGVVVQSLVGYIMAgvYGsikNHIAgFAILYGIFLTLGELGPGNNIGLLAAKTCATGVRGRYYGI 395
                 5788777766.59******************************888887553577888888999999999999666666666666666666******** PP

       MFS_1 126 lsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee 188
                 +sa   +Ga +g  + +++ +++g       +++f+++  +++l++v+  ++++ ++++  + ++++++
  CCE28404.1 396 ASAVGKVGAFVGTFVFPYIQAAGGegtvqsAQYPFWVASSLCILSAVV--AFFFIPNVSQDTIAEEDKK 462
                 ********************9999*********************998..7777777777777666663 PP

>> Transgly_assoc  Transglycosylase associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.16   9.4e+02       6      17 ..      86      97 ..      84     105 .. 0.76
   2 ?   -2.8   0.1       1.3   7.9e+03      24      35 ..     187     198 ..     178     201 .. 0.58
   3 ?    4.0   2.3      0.01        61       5      31 ..     314     339 ..     314     350 .. 0.73
   4 ?   10.2   0.7   0.00011      0.68       3      20 ..     399     416 ..     398     445 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.16
  Transgly_assoc  6 vGAfvGgfllgl 17
                    +G +vG++l+g+
      CCE28404.1 86 AGTVVGQLLFGF 97
                    577888888875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
  Transgly_assoc  24 ggelaslivaii 35 
                     g+ ++ +++ ++
      CCE28404.1 187 GFVFGAFVPYLV 198
                     445555555554 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.01
  Transgly_assoc   5 ivGAfvGgfllgllgigvgggelasli 31 
                     i+GAfv  +++++  +  gg  + sl+
      CCE28404.1 314 ILGAFVSDWIGPKYTL-IGGVVVQSLV 339
                     89********999988.5555555553 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00011
  Transgly_assoc   3 lGivGAfvGgfllgllgi 20 
                     +G vGAfvG+f+++ +  
      CCE28404.1 399 VGKVGAFVGTFVFPYIQA 416
                     789*********987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3821.84
//
Query:       CCE28405.1  [L=254]
Description: uncharacterized protein CPUR_01880 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1894.60
//
Query:       CCE28406.1  [L=566]
Description: related to tRNA nucleotidyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-19   69.0   0.0    1.4e-18   67.5   0.0    1.9  1  PolyA_pol        Poly A polymerase head domain
    1.3e-06   28.0   1.4    6.4e-06   25.8   0.4    2.5  2  PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polym


Domain annotation for each model (and alignments):
>> PolyA_pol  Poly A polymerase head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   1.6e-22   1.4e-18       1     126 []      35     189 ..      35     189 .. 0.82

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.6e-22
                 EEEETHHHHHHHTT---CEEEEEEC...............S-HHHHHHHHHHHHT-EEEEETTTTCCCCEECCEE....EEECCEECEEEEEE---SSH CS
   PolyA_pol   1 lylvGGaVRDlllgkepkDvDlatd...............aapeelakllrkkvkeallsgeefqtiavlekkql....levatfRlekdesdarnpes 80 
                 ++++GG+VRD+llg ++ D+Dla++               a+pe  ak  ++++      +++f    + e++++    le+a  +l    +d +n ++
  CCE28406.1  35 IWIAGGWVRDRLLGIPSSDLDLALSkvtgrefgmflesfsARPEIGAK-YQQRAADLGIPDARFSRFYIVERNNDkskkLETAGGKLFGLDIDLVNLRK 132
                 59**********************999999999999999666665554.55555554444555555555544433344799999999999999999998 PP

                 HH.............HHHHHHCTSSBGGGS-EEECTTTCEE-TTS.HHHHHHTTEE- CS
   PolyA_pol  81 ekste..........sleeDlkrRDftiNalaynlnkgkvlDlfg.GikdLkskvir 126
                 e +            + eeD  rRD t+N+l  +l+k++v+Dl+g G++dL+ +++r
  CCE28406.1 133 EVYDGqsrtprmefgTPEEDTFRRDATVNSLLFDLEKQEVVDLTGrGVEDLDAQIMR 189
                 888668999999999*************************************99876 PP

>> PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polymerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.12   1.1e+03      37      59 ..       3      25 ..       1      29 [. 0.84
   2 !   25.8   0.4   7.1e-10   6.4e-06       1      57 [.     216     275 ..     216     286 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.12
  PolyA_pol_RNAbd 37 sghpeaglelLretgLlkylfPe 59
                     + +p+++++lL   +Ll+ l+ e
       CCE28406.1  3 ASKPKRTIDLLPAEQLLRELLLE 25
                     67899************999866 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 7.1e-10
  PolyA_pol_RNAbd   1 gFtIepeTaaairklap...lLkkispeRifeEllKlLlsghpeaglelLretgLlkylf 57 
                      gFtIep T+  +++      l + i+ +R+  El K++ + hpe ++++L+e +L+ ++f
       CCE28406.1 216 GFTIEPTTMRYMKDDDIreaLDTMITRDRVNIELFKIMKHAHPEIAFQRLFEANLYTPVF 275
                      8***********9864444455679********************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4164.47
//
Query:       CCE28407.1  [L=535]
Description: uncharacterized protein CPUR_01882 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0062   16.6  11.0      0.019   15.1  10.5    2.0  2  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.4      0.13   2.3e+03      16      25 ..      19      27 ..      10      31 .. 0.75
   2 !   15.1  10.5   1.1e-06     0.019       8      31 ..      33      56 ..      20      64 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.13
                SSSS-HHHHH CS
     Zn_clus 16 kkPaCsnCkk 25
                k++ C+ Ck+
  CCE28407.1 19 KFG-CRTCKS 27
                566.888886 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.1e-06
                HCT---STSSSS-HHHHHCTHHHC CS
     Zn_clus  8 kkKvKCdakkPaCsnCkklnleCt 31
                 +Kv+Cd+  P+C+nC + + +C 
  CCE28407.1 33 VRKVRCDETWPTCQNCDRTGRQCD 56
                59*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3937.30
//
Query:       CCE28408.1  [L=430]
Description: uncharacterized protein CPUR_01883 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.08   12.8   0.0       0.19   11.6   0.0    1.6  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.1e-05      0.19       1      58 [.     226     284 ..     226     286 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.1e-05
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE..TTTSEEEEEEEEESSHHHHHHHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd..etgkskgfafVeFeskedAekAlea 58 
                 l+++nLppd+  +eL    +++G++  ++ ++d   +  ++  a   F ++e+A++ l++
  CCE28408.1 226 LWLTNLPPDIRVRELLSTIRNVGRV-YATFINDpdGHVHATAAAKLVFFTPEAAQRLLAQ 284
                 6889*********************.*******988888999999999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3228.33
//
Query:       CCE28409.1  [L=268]
Description: related to D-arabinitol 2-dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-52  178.1   0.1    2.5e-52  177.8   0.1    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.3e-41  142.2   0.6    1.6e-41  142.0   0.6    1.0  1  adh_short     short chain dehydrogenase
    2.7e-09   37.2   0.4    3.6e-09   36.8   0.4    1.1  1  KR            KR domain
    0.00089   18.8   1.4     0.0052   16.3   1.4    1.9  1  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.8   0.1   5.5e-56   2.5e-52       1     232 [.      18     263 ..      18     264 .. 0.91

  Alignments for each domain:
  == domain 1  score: 177.8 bits;  conditional E-value: 5.5e-56
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HH...HHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEE....EEEE-----EGCSS-G CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kk...rveelaeelgaev..lecDVtdeeqvealveevvekfgklD....ilvnnagiapklkgpf 87 
                   Gaa+gIG  +A  + e+G +v++ d+ e   +    ++++la+ +g ++   +cDVtde +ve ++++v+++ +kl     + + +agi ++    +
    CCE28409.1  18 GAARGIGITLAMGIVEAGGSVACLDILETPaHTewiKLQRLASLHGVAAtyHHCDVTDEHAVEVVMDTVAANAEKLGcpfwGTIACAGIQQT--IAA 112
                   9*************************9988543222578888888866346**********************9987333368999999999..99* PP

                   GGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC...CEEEEEEEGGGTSBSTTTT..HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGG CS
  adh_short_C2  88 letsreefdraldvnlyslfllakaalplmkeg...gsivnlssvgaervvpnyn..aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaa 179
                   le +  +f+r+l vn++++f+++k+a+++++++   gsiv ++s++++++  + +  ay+++Kaa+++++r+lA e+g++giRvN+ spg+i T+++
    CCE28409.1 113 LEYPMVDFERILRVNVTGVFNTCKYAARILHREtraGSIVIIASMSGNIANRGLDctAYNTSKAAVQQMCRSLAQEWGQYGIRVNSLSPGYIMTPMT 209
                   ****************************77665589**************9998888***************************************9 PP

                   GGSTT.HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 180 sgikg.fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   +++   ++e+++ ++  a lgr+g pe+    a+fL+s+ a+++ G++l vDgG
    CCE28409.1 210 DKLLTeNPEIEKTWRGGALLGRFGIPEDLKLPAVFLLSEGAAFMHGSDLRVDGG 263
                   987654999********************************************9 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.0   0.6   3.5e-45   1.6e-41       1     191 [.      12     213 ..      12     217 .. 0.92

  Alignments for each domain:
  == domain 1  score: 142.0 bits;  conditional E-value: 3.5e-45
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEE....EE---SS--S CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvL....vnNAGitgsg 91 
                 k+v +tGa++GIG  +a  ++++G +v+++d+ e ++++   +l+++    g  a++ ++Dvtd+++ve ++++++++ +kl +     +++AGi+++ 
  CCE28409.1  12 KTVAITGAARGIGITLAMGIVEAGGSVACLDILETPAHTEWIKLQRLaslhGVAATYHHCDVTDEHAVEVVMDTVAANAEKLGCPfwgtIACAGIQQTI 110
                 799**********************************99999999888788899*********************99997775433444********** PP

                 SGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TT..BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short  92 pfselseeewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvag..vaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 ++ e+   ++er++ vN+tgvf++++ +++ +  + ++G+Iv ++S+ g+ ++ g   +aY +sKaav+++ rsla+e+ ++girvn++ PG++ T+m+
  CCE28409.1 111 AALEYPMVDFERILRVNVTGVFNTCKYAARILHrETRAGSIVIIASMSGNIANRGldCTAYNTSKAAVQQMCRSLAQEWGQYGIRVNSLSPGYIMTPMT 209
                 *******************************99999*************7665541179**************************************** PP

                 HHHC CS
   adh_short 188 kelr 191
                  +l 
  CCE28409.1 210 DKLL 213
                 9875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.4   8.1e-13   3.6e-09       2     161 ..      13     183 ..      12     204 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 8.1e-13
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHS....S---EEEE-------- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaee....ppikGvihaAgvlrdk 95 
                 t+ itG++ g+G +la  ++e g +   l   + ++ +++  ++++l++l g+  ++ ++Dv+d++ave +++++ a++     p  G i +Ag+ ++ 
  CCE28409.1  13 TVAITGAARGIGITLAMGIVEAGGSVACLDILE-TPAHTEWIKLQRLASLhGVAATYHHCDVTDEHAVEVVMDTVAANAeklgCPFWGTIACAGIQQTI 110
                 578*******************96544443333.34444444688888877******************999988777633345678************ PP

                 -TTT--HHHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--TT-..HHHHHHHHHHHHHHH CS
          KR  96 lleemtaedleqvlapKvkGawnLhelled.....esldffvlfSSiagllgsagq..anYaaaNaflDalae 161
                 +  e  + d+e++l+  v+G+ n  ++ ++     ++   +v+++S++g + ++g   ++Y +  a + ++++
  CCE28409.1 111 AALEYPMVDFERILRVNVTGVFNTCKYAARilhreTRAGSIVIIASMSGNIANRGLdcTAYNTSKAAVQQMCR 183
                 *********************9998877666666688899*********999998533556555544444443 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.4   1.2e-06    0.0052       2     162 ..      15     191 ..      14     212 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.2e-06
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHHHT-SE.........EEE--S.---HHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsalerlfkeeqpda.........vihlAa.vggvaas 80 
                  +tGa+  iG  l+  + e+g  v +ld l++  +t+ ++            + +++d+td+ a+e ++++++++a          i +A+ ++++aa 
  CCE28409.1  15 AITGAARGIGITLAMGIVEAGGSVACLDILETPAHTEWIKLQrlaslhgvaaTYHHCDVTDEHAVEVVMDTVAANAeklgcpfwgTIACAGiQQTIAA- 112
                 69****************************9999999988779999************************9988765566666668999996666555. PP

                 HHSH....HHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSS.SSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT- CS
   Epimerase  81 sedp....adfieknlqgtlnlleaarkagvkrllflsSsevYGkdae.qpkeettltgplkpnspYaaaKlageklveayaaqygl 162
                  e+p    +++++ n+ g+ n +++a +    r   ++S  +   +   +  +  +        ++Y  +K+a+ ++++++a++ g 
  CCE28409.1 113 LEYPmvdfERILRVNVTGVFNTCKYAARILH-RETRAGSIVIIASMSGnI-ANRGL------DCTAYNTSKAAVQQMCRSLAQEWGQ 191
                 5555333356678999999999999998866.889999988888777723.33333......679****************998763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1987.88
//
Query:       CCE28410.1  [L=540]
Description: uncharacterized protein CPUR_01885 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.2    8.5   5.6       0.53   10.5   1.7    2.0  2  DUF4611   Domain of unknown function (DUF4611)


Domain annotation for each model (and alignments):
>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.45   8.2e+03      50      60 ..     407     417 ..     391     430 .. 0.54
   2 ?   10.5   1.7   2.9e-05      0.53      53      94 ..     488     530 ..     482     532 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.45
     DUF4611  50 veqeaqddvaa 60 
                 ++qe +++  +
  CCE28410.1 407 IHQEDENSNSD 417
                 33333332221 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 2.9e-05
     DUF4611  53 eaqddvaaagdeeeegededdeeeekniknktksdeP..paKrt 94 
                 ea +d+++ ++ee++g++e+ e+e+ n++nk   ++P  + Kr 
  CCE28410.1 488 EAGNDANHLEEEEDDGQEEE-ESEQLNTNNKRCRAQPtySVKRA 530
                 66776666666666666555.55668899999888884456665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       926  (0.0516482); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3913.42
//
Query:       CCE28411.1  [L=193]
Description: uncharacterized protein CPUR_01886 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-05   24.7   0.2    2.8e-05   24.3   0.2    1.2  1  MRP-L28   Mitochondrial ribosomal protein L28


Domain annotation for each model (and alignments):
>> MRP-L28  Mitochondrial ribosomal protein L28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.2   1.5e-09   2.8e-05      43     115 ..      69     142 ..      61     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.5e-09
                 XXXXSXSXXTTSS.TTX..XSXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     MRP-L28  43 kPveelivplksv.dsakrrqrkllelskeelerrallekqwaryrqqekekdeqlirqqleaqeealeeLkkv 115
                  P  e  + ++ + ++   r+++ l++++    r+ +++++w++ ++q++e+  ++ +++ + ++ a+eeL+k 
  CCE28411.1  69 VPKSENSTRVQTLrKNMFSRAPPPLRMGRLRHLRHWTIHRAWQLFQRQQREATSKERQRMHAGMHSACEELRKS 142
                 566666666655514456899**************************************************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1519.88
//
Query:       CCE28412.1  [L=200]
Description: probable GTP-binding protein rho2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-49  166.9   0.0    3.1e-49  166.7   0.0    1.0  1  Ras        Ras family
    1.9e-21   76.5   0.0    2.5e-21   76.1   0.0    1.1  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    1.4e-05   24.6   0.0    2.2e-05   24.0   0.0    1.3  1  Arf        ADP-ribosylation factor family
  ------ inclusion threshold ------
      0.016   14.7   0.0      0.095   12.2   0.0    1.8  2  GTP_EFTU   Elongation factor Tu GTP binding domain
      0.018   14.4   0.0      0.024   14.0   0.0    1.2  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
      0.071   12.5   0.0        0.1   12.0   0.0    1.2  1  SRPRB      Signal recognition particle receptor beta subunit
       0.15   12.1   0.0       0.23   11.5   0.0    1.4  1  MMR_HSR1   50S ribosome-binding GTPase
       0.21   11.4   0.0       0.29   10.9   0.0    1.2  1  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
       0.21   11.3   0.0        2.3    8.0   0.0    2.1  2  PduV-EutP  Ethanolamine utilisation - propanediol utilisation


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7   0.0   1.6e-52   3.1e-49       1     160 [.      13     184 ..      13     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 166.7 bits;  conditional E-value: 1.6e-52
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeik 98 
                 Klv++Gd+a+GKtsll  f+ ++F+++y++T+ +++y+++++vdgk+v+l +wDTAGqe++++lr+l y++a++il+ ++++  +s++nvk kw+ee +
  CCE28412.1  13 KLVIIGDGACGKTSLLSVFTLGYFPTRYIPTV-FENYVTDCRVDGKSVQLALWDTAGQEDYERLRPLAYSKAHVILVGFSVDMPDSLDNVKsKWIEEAT 110
                 9*******************************.**********************************************************9******* PP

                 HHSTTTSEEEEEEETTTGGG............G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  99 rvaeenvpivLvGnKvDlee............kravsteegeelakelg.lkfletSAktnenveeafeellrei 160
                 r ++  vpi+LvG K Dl+e            +r ++ ++ge+ a+e+g  ++le+S  + e+v+++fe+++r++
  CCE28412.1 111 RLCS-GVPIILVGLKKDLREdpvaieemrkksQRFLTPHDGEAAAREVGaRRYLECSSLSGEGVDDVFEAATRAA 184
                 ****.7*******************************************889******************99976 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   1.3e-24   2.5e-21       1     119 [.      13     126 ..      13     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 1.3e-24
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCH. CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenl. 95 
                 K+v++Gd++ GKtsll+ f+ + f +++ +t+  +++t  + +++g       k+v+l++WDtaGqe+++ l+pl +++a+++++ +     +s +n+ 
  CCE28412.1  13 KLVIIGDGACGKTSLLSVFTLGYFPTRYIPTVFENYVTD-C-RVDG-------KSVQLALWDTAGQEDYERLRPLAYSKAHVILVGFSvdmPDSLDNVk 102
                 99******************************9999875.4.3444.......789****************************988643544557762 PP

                 HHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  96 keWlkelkkvagkspvilvgnkiD 119
                 ++W++e ++ ++  p+ilvg k D
  CCE28412.1 103 SKWIEEATRLCSGVPIILVGLKKD 126
                 58********************99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.1e-08   2.2e-05      16     168 ..      13     177 ..       9     183 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.1e-08
                 EEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEE...EEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEE..EEEETT-CTTHHHHHHHHHHHC CS
         Arf  16 rilllGLDnaGKtTilkklkleelvt.tvPTigfnvee...leiknlkftvwDvGGqeklRplWknYfektdavi..fvvDsadreRleeakeeLkall 108
                 +++++G  + GKt +l  ++l+ + t  +PT+  n  +   +  k +++ +wD  Gqe   +l    ++k ++++  f vD    + l++ k++  +  
  CCE28412.1  13 KLVIIGDGACGKTSLLSVFTLGYFPTrYIPTVFENYVTdcrVDGKSVQLALWDTAGQEDYERLRPLAYSKAHVILvgFSVDMP--DSLDNVKSKWIEE- 108
                 899***999**************987689***988643333788*************99988888888887776623455554..5577777654332. PP

                 TSGCCTTSEEEEEEE-TTSTTSS-H.HHHHHHTTGGGSS.........SSSSEEEEEEBTTTTBTHHHHH CS
         Arf 109 eeeelkevallvlaNKqDlpealse.eelrellgleelk.........gkrkleiqkcsavkgeglkegl 168
                 +++  + v++++++ K+Dl+e+  + ee+r++ + + l+                 +cs ++geg+++ +
  CCE28412.1 109 ATRLCSGVPIILVGLKKDLREDPVAiEEMRKK-SQRFLTphdgeaaarEVGARRYLECSSLSGEGVDDVF 177
                 223356999999999***98864430444433.2222322333332222222234567777777777766 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.25   4.9e+02       4      21 ..      12      29 ..      10      35 .. 0.87
   2 ?   12.2   0.0   4.8e-05     0.095      66     189 ..      55     181 ..      38     184 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.25
                EEEEEEESTTSSHHHHHH CS
    GTP_EFTU  4 rnigiighvDhGKtTLtd 21
                r+++iig+   GKt+L+ 
  CCE28412.1 12 RKLVIIGDGACGKTSLLS 29
                7899***********986 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.8e-05
                 TCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT..TBSTHHHHHHHHHHHH..TTTEEEEEEESCGST..HHHHHHHHHHHHHHHHHHHHHHH CS
    GTP_EFTU  66 etkkylinliDtPGHvdFskevirglrvlDgavlvvdav..eGvepqteevlrlalk..egvpiivfiNKmDrl..kaelkeiveevkqklsrkeekle 158
                 ++k+ +++l Dt G +d+ +    +++++++ ++ ++++  +   +   + ++ a +   gvpii++  K D       ++e+ ++ ++ l+ ++++  
  CCE28412.1  55 DGKSVQLALWDTAGQEDYERLRPLAYSKAHVILVGFSVDmpDSLDNVKSKWIEEATRlcSGVPIILVGLKKDLRedPVAIEEMRKKSQRFLTPHDGEAA 153
                 59999************************9999876655445544444444444443113999****9****996544556666666656655555554 PP

                 HHHHTTTTTEEEEEEBTTTTBTHHHHHHHHH CS
    GTP_EFTU 159 kygekgekevpvvfgSalkgegvktllealv 189
                 + ++        + +S+l+gegv++++ea +
  CCE28412.1 154 AREVG---ARRYLECSSLSGEGVDDVFEAAT 181
                 44444...4689*************999976 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.2e-05     0.024       1      62 [.      13      73 ..      13      89 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
   Gtr1_RagA  1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafv 62
                k++++G +  GKts+ s+    y ++  +       v+  +v   + ++l lwD  Gqe++ 
  CCE28412.1 13 KLVIIGDGACGKTSLLSVFTLGYFPTRYIPTVFENYVTDCRV-DGKSVQLALWDTAGQEDYE 73
                7899**************999**9976555555555555555.35579***********985 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.2e-05       0.1       4      61 ..      12      71 ..      10     104 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.2e-05
                -EEEEE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG...GGTT-SEEEETT-GC CS
       SRPRB  4 pavllvGlsdsGKTslftrLttdsvkktvtSq..essaalkvksekgskltliDfPGhek 61
                ++++++G   +GKTsl+   t + + + ++    e+ +++   + k  +l+l D  G+e 
  CCE28412.1 12 RKLVIIGDGACGKTSLLSVFTLGYFPTRYIPTvfENYVTDCRVDGKSVQLALWDTAGQED 71
                7899*******************6655555443488888777677888888999999875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.23       2     103 ..      14     108 ..      13     143 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSE.EEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdi.negrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeelee 99 
                  +i+G    GK++L++  t     +  +p +  +  +  rv+ k  ++ l+Dt+G  e    +  ++ + la  +a++il+ +++     + ld+   +
  CCE28412.1  14 LVIIGDGACGKTSLLSVFTLGYFPTRYIPTVFENYvTDCRVDGKSVQLALWDTAG-QE----D-YERLRPLAYSKAHVILVGFSVD--MPDSLDNVKSK 104
                 6899**************99877777777665555344556645579********.44....2.2344444455666666666533..22333333333 PP

                 HHHH CS
    MMR_HSR1 100 llee 103
                 ++ee
  CCE28412.1 105 WIEE 108
                 3333 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.29       3      23 ..      15      35 ..      14      77 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
      AAA_21  3 vliGpNgsGKSnLLdaldlla 23
                v+iG+ ++GK++LL  + l  
  CCE28412.1 15 VIIGDGACGKTSLLSVFTLGY 35
                9**************997764 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0011       2.3       2      20 ..      12      30 ..      11      55 .. 0.75
   2 ?    0.8   0.0      0.19   3.8e+02     116     139 ..     155     178 ..     148     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0011
   PduV-EutP  2 kkilliGkvgsGKttLtqa 20
                +k+++iG   +GKt+L   
  CCE28412.1 12 RKLVIIGDGACGKTSLLSV 30
                6899***********9644 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.19
   PduV-EutP 116 ksaGaekifevsavekegieellk 139
                 +++Ga++  e s+++ eg++++++
  CCE28412.1 155 REVGARRYLECSSLSGEGVDDVFE 178
                 6789****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 1754.21
//
Query:       CCE28413.1  [L=525]
Description: uncharacterized protein CPUR_01888 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-05   23.6   0.0      0.004   16.8   0.0    2.2  1  DDE_1        DDE superfamily endonuclease
  ------ inclusion threshold ------
      0.027   14.5   0.0      0.066   13.3   0.0    1.7  1  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
      0.038   14.0   0.3       0.15   12.0   0.1    2.0  2  HTH_11       HTH domain


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.6e-07     0.004       4     125 ..     224     387 ..     221     392 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.6e-07
       DDE_1   4 ltvllcanaagsekLkplvigkaksprafkngektkkkldveyksnrkawltssifeeWLkvfdkrle............................... 71 
                  ++++++  a +  ++p+v++k    ++ ++    +   ++++  ++++   +++  +W+++f+++                                 
  CCE28413.1 224 FSTMVGCANAAGSMIPPMVVFKEWPTESWEG---YDLDEGIRFARSETGFSNAETSMDWIRHFNRSSFehtseaqsrgvtftdwfgcdefmrdpdssdh 319
                 566666655556689*******765555555...55555555555555555555555555555554444444445555555555555555556668899 PP

       DDE_1  72 .........aekrkil..Llldssrshetvel.leselqniklvflPa..ssasllqPldqgvvselK 125
                           ek++i+  L+l +++  + +e+ + +   +i++++ P+  ++++l qPl++gv  +lK
  CCE28413.1 320 vqydpsknrPEKERIWrlLVLYGFTFKPSLEFmEYCTRFDIEILVPPPkaTVTHLTQPLEVGVSRPLK 387
                 99999998866666644499999999999999888899999998877522468999999999999998 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.1e-05     0.066       6      60 ..      85     136 ..      82     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
                  HHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHT CS
  HTH_Tnp_Tc5   6 kaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRh 60 
                  +a++ +i  l ++g+  + +l+ e+A+ l   +a+ ++p + ++ +W +rF   +
   CCE28413.1  85 RAVIAYITWLEKSGFYASPALVEEAANTL---RAQRTPPEPPVGVSWYRRFQANN 136
                  79999************************...68899**************8766 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.5e-05      0.15       9      53 ..      29      74 ..      19      74 .. 0.90
   2 ?   -2.1   0.0      0.67     4e+03      29      44 ..      84      99 ..      84     101 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.5e-05
      HTH_11  9 Lleargp.isgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrG 53
                L++++++ ++    A + nvS ++++r +k+++ +g p +s++g+G
  CCE28413.1 29 LRSTKSTrLTLRAAAAKHNVSASAIHRQLKSIRLSGRPDYSTSGPG 74
                7888889999999999********************9999999887 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.67
      HTH_11 29 rrtvrrdIkaLeelgv 44
                +r+v  +I  Le++g+
  CCE28413.1 84 TRAVIAYITWLEKSGF 99
                599*********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3669.97
//
Query:       CCE28414.1  [L=1516]
Description: related to chicken h-caldesmon, Uso1p and YKL201c [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-55  188.7   2.4    1.1e-55  188.7   2.4    5.1  4  NST1       Salt tolerance down-regulator


Domain annotation for each model (and alignments):
>> NST1  Salt tolerance down-regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.7   2.4   6.4e-60   1.1e-55      22     179 ..     143     303 ..     122     312 .. 0.74
   2 ?  -16.1  33.3         1   1.8e+04      19     121 ..     628     729 ..     607     743 .. 0.32
   3 ?   -9.4  24.4         1   1.8e+04      15      88 ..     738     813 ..     719     828 .. 0.29
   4 ?    0.4   2.9     0.034   6.2e+02       3      25 ..     888     910 ..     878     940 .. 0.46

  Alignments for each domain:
  == domain 1  score: 188.7 bits;  conditional E-value: 6.4e-60
        NST1  22 vdeksqvesskrkkkkkkkkk...nrsnsnnqneesstslstsksvaittssarsvknnppsvssaalrsakk.vskdrsiwntssqEereklkeFWls 116
                 +++  q+ ++k kk+kkkkkk   ++++     +  + s  +  + a+ + + +s+    +  +++++ s    +s+d+ iw+ts++Eere++keFWl 
  CCE28414.1 143 IPNGYQTGATKGKKNKKKKKKqqqQEAGGFRYTDGGEPSSAAAAAAAAAAAHVSSAFAARTAARHHQMGSRPSgMSRDK-IWSTSNHEERERIKEFWLG 240
                 4555555666666666666662223333334455555555555544555555555555566666666666544156677.******************* PP

        NST1 117 LgEeERReLvkvEKeavLkKmKeqqKhsCsCsvCGRkRvaiEEELEvlYDaYYeeLeqYanmn 179
                 LgEeER++LvkvEK+avLkKmKeqqKh+CsC+vCGRkR+aiEEELE lYDaYY eLeq+an+ 
  CCE28414.1 241 LGEEERKSLVKVEKDAVLKKMKEQQKHTCSCTVCGRKRTAIEEELEGLYDAYYLELEQFANQG 303
                 ************************************************************986 PP

  == domain 2  score: -16.1 bits;  conditional E-value: 1
        NST1  19 knevdeksqvesskrkkkkkk.........kkknrsnsnnqneesstslstsksvaittssarsvknnppsvssaalrsakkvskdrsiwntssqEere 108
                 +++vd++  +++++ +kkk k         ++k+r ++++ +ee++           +++ +r ++++++   +  +++a+k ++++  +++++ E   
  CCE28414.1 628 SRQVDQQRAKKAKNAQKKKDKaaqkkqalaEEKARREADKAAEEAAR---------LEAERKRIAEQKQKAEDKRKQKEAQKKAEEEARLRKEA-ERLR 716
                 12222221111111111111111000111122222222222222222.........22222222222222223333333333333333333322.3333 PP

        NST1 109 klkeFWlsLgEeE 121
                 +++e   + +E+E
  CCE28414.1 717 RIHEQREKQAEQE 729
                 4444444444444 PP

  == domain 3  score: -9.4 bits;  conditional E-value: 1
        NST1  15 qqqdknevdeksqvesskrkkkkkk..kkknrsnsnnqneesstslstsksvaittssarsvknnppsvssaalrs 88 
                 +++  +e +++ ++e+ ++k+++ +  k+k++ + +++++++++ l++ ++va +++++r+++ ++  + +++++s
  CCE28414.1 738 REKRLKEEQRQREKEARQQKEREAQerKEKQERDRREKEARAAKTLKEAQEVAHRAREERAAAAHHRPSAQTSQHS 813
                 1111111111111111111111111001222222222223333333333334444444443333333333333332 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.034
        NST1   3 dqseensqeqqqqqqdknevdek 25 
                 +q++ + q+q+qq+ ++++ +++
  CCE28414.1 888 QQQQPQPQQQRQQKPKQQQPQQQ 910
                 11111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3674  (0.204919); expected 358.6 (0.02)
Passed bias filter:                      882  (0.049194); expected 358.6 (0.02)
Passed Vit filter:                       561  (0.0312901); expected 17.9 (0.001)
Passed Fwd filter:                       197  (0.0109878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 4.30u 0.43s 00:00:04.72 Elapsed: 00:00:00.84
# Mc/sec: 5439.07
//
Query:       CCE28415.1  [L=1080]
Description: uncharacterized protein CPUR_01890 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-76  255.8  21.3    9.8e-76  254.7  18.7    2.3  2  RSN1_7TM  Calcium-dependent channel, 7TM region, putative pho
    2.1e-40  138.8   0.0    3.1e-40  138.3   0.0    1.2  1  PHM7_cyt  Cytosolic domain of 10TM putative phosphate transpo
    1.1e-32  112.9   2.3    1.1e-32  112.9   2.3    1.9  2  RSN1_TM   Late exocytosis, associated with Golgi transport


Domain annotation for each model (and alignments):
>> RSN1_7TM  Calcium-dependent channel, 7TM region, putative phosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.034     2e+02     206     245 ..      37      76 ..      30      83 .. 0.86
   2 !  254.7  18.7   1.6e-79   9.8e-76       1     272 [.     398     686 ..     398     688 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.034
    RSN1_7TM 206 vialiYsviaPlilpfaliyfllgylvykyqllyvydtky 245
                 ++a +Ys +a+ +   a i+++++++   +q +y+ ++k+
  CCE28415.1  37 AVASVYSAVATSLGFTAFIALCFSFIRPYHQAIYAPKSKH 76 
                 5777999999999999999999999999999999988765 PP

  == domain 2  score: 254.7 bits;  conditional E-value: 1.6e-79
    RSN1_7TM   1 rklivtlllvlliifwiipvafv.gllsnletltkvlpflkkilelskkllsvvtgllPtlllslllallpiilrllsklqGalsrselelsvvskyfa 98 
                 r++i++l++ +l+++wi p+a++  +l+nl +l kv++ ++  le++++l++vv+g+ +++l+sl++++lp+i+r+ls  +G+++++ +e++v+sk++a
  CCE28415.1 398 RRWINNLWFSILTLLWIAPNAMIaIFLVNLGNLGKVWKGFQIQLERNTTLWGVVQGIASPALTSLFYLVLPMIFRRLSIKAGDQTKTGRERHVLSKLYA 496
                 799********************99************************************************************************** PP

    RSN1_7TM  99 FlvvnvFlvftlagtalslleeiid..................nptsipkllaeslpkasnFfityillqglagaaleLlqlvklilflikrkflsktp 179
                 F+v+n+++vf+++++++++++++++                   + + ++ + +s ++ s+F++ty+l+++l gaa++L+q+++li+ +++++f s+tp
  CCE28415.1 497 FFVFNNLIVFSFFSVLWTFVSSVVKstsepgsngkkmdawsaiVEAHLATNILVSFCNTSPFWVTYLLQRQL-GAAVDLAQIWPLIVAFFQKRFSSPTP 594
                 ************************99*********9999888877788888888889***************.************************** PP

    RSN1_7TM 180 rdlaerytkppsfdygteypkvllifvialiYsviaPlilpfaliyfllgylvykyqllyvydtkyesgGklwpralnrllvglvlfqlllig 272
                 r+l+e++ +pp+fdy+ +y ++l+++++al++ +i+Pl+l+ +++yf+l+++ +ky +ly ++tk+esgG +w+ ++nr++++ +l++ ++++
  CCE28415.1 595 RELIELT-APPPFDYANYYTYFLFYATVALCFGTIQPLVLLATAMYFCLDCYLKKYLILYRFVTKTESGGLFWRVVFNRMVFAAILANGVVLL 686
                 *****77.******************************************************************************9987766 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.0   5.1e-44   3.1e-40       1     176 []     218     387 ..     218     387 .. 0.91

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 5.1e-44
    PHM7_cyt   1 srTvlvtgiPkelrseeklkeffeelypgkvvesvqivrdvkkldklveerekavrkleaalskykkngkklpkkrpthklgflglkl....igkkvda 95 
                 +rT+++ +iP++ +s+e+++++++++ p++   ++ ++r+vk+l++l+ee++k+vrkle++l+ky+k++++lp  rpt+k ++    +     g+k da
  CCE28415.1 218 ARTLMLFDIPRQGCSDEGIARIIDSVVPNSSFARTVVARNVKDLPDLIEEHDKTVRKLEKVLAKYLKDPQNLPPARPTCKASKKDRSFetypSGQKLDA 316
                 69********************************************************************************76433333448****** PP

    PHM7_cyt  96 idyyrekleeldeeieeerekvkkk.plgaaFvtfesersaaavakqakcaaqiqqssnptlkpkkwtvelAPePrDviWeN 176
                 idy+++++++l+ ei++ r++v+k+ +++++F +++++++a+++a   +c++       +  kp++ +v+lAP P+DviW+N
  CCE28415.1 317 IDYLTQRIRNLEMEIRDVRKSVDKRsTMPYGFASYADIPEAHSIA--YACGK-------K--KPHGASVRLAPRPTDVIWPN 387
                 **********************886379****************6..44631.......1..5789**************99 PP

>> RSN1_TM  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   2.3   1.9e-36   1.1e-32       2     155 ..      41     194 ..      40     195 .. 0.90
   2 ?   -2.5   0.4      0.66   3.9e+03      87     107 ..     504     524 ..     491     566 .. 0.49

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 1.9e-36
     RSN1_TM   2 lltslvinlvlalvflllFlilRkknkrvYaprtylkgeeertpplpqkglfgWipallkisdeeilekaGLDayvflrflkmlikiflvlavlalivL 100
                 ++++++++l++++++ l+F+++R+  + +Yap+++++ +e+++pp+  k +++Wi++ll+++++ +++++G+Da++flrf++ml+++flvl++l++ vL
  CCE28415.1  41 VYSAVATSLGFTAFIALCFSFIRPYHQAIYAPKSKHA-DEKHAPPPIGKAPWAWITPLLNTKEAVLMQQIGMDATIFLRFIRMLRNMFLVLSLLGIGVL 138
                 7899*******************************97.9999999****************************************************** PP

     RSN1_TM 101 lPvnatggegedskesk...sgldklsisnvsegsnrlwahvvvayiftglvlyllyr 155
                 +P+n++  ++ + + +    + + +++++n  +g   +wa vv+ y+f ++v+ +l++
  CCE28415.1 139 VPINISTFKQITFQGKAdptEWMLRITPRNS-WG-WPIWAVVVAGYVFNFVVMGFLWW 194
                 ****765555544443344477889999998.77.79*******************97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.66
     RSN1_TM  87 kiflvlavlalivLlPvnatg 107
                  +f++++vl  +v + v+ t+
  CCE28415.1 504 IVFSFFSVLWTFVSSVVKSTS 524
                 233333333333334444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1080 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 7275.71
//
Query:       CCE28416.1  [L=325]
Description: uncharacterized protein CPUR_01891 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2398.58
//
Query:       CCE28417.1  [L=873]
Description: probable subtilisin-like serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-40  139.1   1.3    2.9e-40  138.4   1.3    1.3  1  Peptidase_S8  Subtilase family
    1.6e-16   61.0   0.1    3.3e-16   60.0   0.1    1.6  1  fn3_5         Fn3-like domain
     0.0023   17.7   0.1      0.013   15.3   0.0    2.1  2  FlgD_ig       FlgD Ig-like domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4   1.3   4.8e-44   2.9e-40       1     284 [.     144     562 ..     144     583 .. 0.92

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 4.8e-44
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   gkgv+vav+DtG+d++hp l +   g+  lv    + + +  ++ +++   n+  d  g    HGthvAGi+a + p+  ++ g a g+++ ++++ 
    CCE28417.1 144 GKGVKVAVVDTGIDWTHPALGNGCFGKGCLVPFGTDLVGDAFTGRNKPIPGNKPLDCAG----HGTHVAGIIATQ-PNPLGFTGAAAGVTLDAYRIS 235
                   89*******************99999999987777777777777777777777777777....************.********************* PP

                   STTSB-HH..HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTS.TTCEEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaaedkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpsts.knvitvgay 193
                   + +g s++  + li+a+++a+ed++ +i  s+g   + + +++++ a+ + r v + gv v i+aGN+g+      +g  + + + s k+v++v+ y
    CCE28417.1 236 GCEGDSAN--DVLIAAFNKAFEDGANIITSSFG---EAQGWSEDPWAVTASRIV-QAGVPVTIAAGNDGD------SGLFFADSGASgKGVTAVARY 320
                   88888775..9**********************...677777777777899999.99************4......4444444443315******** PP

                   S................................................................................................ CS
                   x................................................................................................ RF
  Peptidase_S8 194 t................................................................................................ 194
                   +                                                                                                
    CCE28417.1 321 Ntietpflsyqssynidggrkidfiytpgdevvwgvsmplyatsldyqvgddacqplpastpdlskyivlvrrggcgftdkltslvakgaqyvmfyn 417
                   ************************************************************************************************* PP

                   .............................................................TTSSB-TT--B-TT.......-EEEE-S-CCCCCCC CS
                   .............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 .............................................................tegkiapfSsrGpssdgklkpdivapGgnivstwsr 230
                                                                                t g ++p+Ss Gp+++ ++kp+i  pGg+i+stw+ 
    CCE28417.1 418 nepgimevtsedptvvkatgmvspeigiawvqllkagrkvtinvaslaqskpslsstpnniTGGAVSPYSSWGPTWEMEFKPQIGTPGGSILSTWPV 514
                   ************************************************************************************************* PP

                   CCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-EE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 231 qsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqdl 284
                    +       sy   sGTSm++P+aa+++Al+ +      pe +  +l  tA++ 
    CCE28417.1 515 AK------GSYAINSGTSMSCPLAAAIIALVSEVRGTHDPELMTNLLSSTAKPS 562
                   *9......3399***************************************986 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.1   5.6e-20   3.3e-16       2     114 ..     603     716 ..     602     717 .. 0.87

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 5.6e-20
       fn3_5   2 aLkeigdk.fsftltlkNtsnkaltykvsandvlTdladkeegklilk.aaspeike.aaltfetskvtvpAnssktvtvtldlpsdakk.kngyfveG 96 
                 +++++++  ++ ++t++N + +a+tyk+++ ++ T ++  ++g + +  ++++   e a+l+f+++++t+pA+ s+ v vt+ +  +a + k+  +++G
  CCE28417.1 603 SFNDTDHLaTNLNFTITNKGSRAVTYKLDQIPSITMYTLGQDGVNAMSfPNEIVN-EkATLSFSQNSITLPAGHSTVVGVTAKPAAGAINpKRLALWSG 700
                 688886666999**************************99999998762344444.36*************************97665446******** PP

       fn3_5  97 fvtlkdsedknpelsvPY 114
                 +vt+++++++  +ls+PY
  CCE28417.1 701 YVTINGTDGS--HLSMPY 716
                 **********..****** PP

>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.42   2.5e+03      13      37 ..     601     626 ..     593     634 .. 0.77
   2 !   15.3   0.0   2.2e-06     0.013      47      75 ..     818     846 ..     813     848 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.42
                 EEEEE..ESSSEEEEEEEE-SS--EE CS
     FlgD_ig  13 plgve.lpeaadevtvtikDasGevV 37 
                 +l+++  ++ a+++++ti+++  + V
  CCE28417.1 601 SLSFNdTDHLATNLNFTITNKGSRAV 626
                 5566677888999******9977666 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.2e-06
                 SEEEEEEE-SB-TTS-B--SEEEEEEEEE CS
     FlgD_ig  47 aGvvsftWdGtdndGnkladGaYtvkvta 75 
                  G + + W+G+ ++G+++++G+Y++ + a
  CCE28417.1 818 RGWSAVPWNGKLESGKYAPEGQYRFVARA 846
                 5778899******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 6409.60
//
Query:       CCE28418.1  [L=243]
Description: probable dolichyl-phosphate beta-D-mannosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-35  122.2   0.0    2.2e-35  122.0   0.0    1.1  1  Glycos_transf_2  Glycosyl transferase family 2
      7e-13   49.0   0.0    9.3e-13   48.6   0.0    1.1  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    2.2e-05   24.1   0.0    2.9e-05   23.7   0.0    1.1  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
    2.8e-05   23.7   0.0    4.6e-05   23.0   0.0    1.3  1  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.0   4.9e-39   2.2e-35       1     169 [.      12     181 ..      12     182 .. 0.98

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 4.9e-39
                      EEEEEESS-TTTHHHHHHHHHHH...GGCCEEEEEEEEES-SSCHHHHHGGGCH.C-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaq...dpypdfeiivvDDgStDetveileelak.edprvrvirreenvGkagalnaglraatgdyilflDaDd 90 
                      sv+ ptyNe k+l+  +  ll++   +  +d+e+i+vDDgS+D+t+e++ +l+k + p+v +  r  + G+++a+ +gl+ +tg++++++DaD 
       CCE28418.1  12 SVILPTYNERKNLPIITW-LLNRtftESNLDWELIIVDDGSPDGTQEVANQLVKaYAPHVVLKPRAGKLGLGTAYVHGLQFTTGNFVIIMDADF 104
                      8*****************.88888******************************999*********999************************* PP

                      EE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHC CS
  Glycos_transf_2  91 epdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrealeel 169
                       ++p++++++v+   k+++d+v g+r++ +g+ + +   ++  + +r+ +   +  l +++s+ +gs++l+++++le++
       CCE28418.1 105 SHHPKFIPQMVALQAKGNYDIVTGTRYAGDGGVFGWDLKRK--FVSRGANLFADTVLRPGVSDLTGSFRLYKKSVLEKV 181
                      *************************************9997..8********************************997 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   2.1e-16   9.3e-13       4     208 ..      11     214 ..       9     225 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 2.1e-16
  Glyco_tranf_2_3   4 lavlVptfneed...vlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllv 94 
                      ++v+ pt+ne +    ++ +l+ + + ++ + e+++v+d+s ++t eva +l++a+   +  vv ++r  g+ g  +a++++l+ +++ +v+++
       CCE28418.1  11 YSVILPTYNERKnlpIITWLLNRTFTESNLDWELIIVDDGSPDGTQEVANQLVKAYAP-H--VVLKPR-AGKLGLGTAYVHGLQFTTGNFVIIM 100
                      79********875544555666666666677*************************76.4..555777.4556788899*************** PP

  Glyco_tranf_2_3  95 DdDtvvePdtlkrllqffltpkvgavgtpvfllnrstlvsalgalefaerhlrflaar..ralgvltlnGsgslirrevlkelegldplflltd 186
                      D+D   +P ++++++++ +  ++++v++ +++  +  +   l + +f  r + +l+a+  ++ gv  l+Gs+ l+  +vl+   ++++++  t 
       CCE28418.1 101 DADFSHHPKFIPQMVALQAKGNYDIVTGTRYAGDGGVFGWDLKR-KFVSRGA-NLFADtvLRPGVSDLTGSFRLYKKSVLEKVITSTESKGYTF 192
                      *****************86669***********99999666777.5666666.44444125557*******************99999888999 PP

  Glyco_tranf_2_3 187 Dyelglrlrragfrtayvpgaa 208
                        e+ +r+++ g  +a vp ++
       CCE28418.1 193 QMEMMVRAKAMGCTVAEVPISF 214
                      9999999999999888777655 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   6.4e-09   2.9e-05       1      95 [.      12     107 ..      12     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 6.4e-09
  Glyco_tranf_2_2   1 svviplraseerhyieervlqkakyy.deeielivvddgSsekfleevssiidl.nllvylkdeddkayslaaarNrGaskaesdlvlFlDaDc 92 
                      sv++p ++++++  i   +l++++   + + eli+vddgS++ + e+ ++++++   +v lk       +l+ a   G + + +++v+ +DaD 
       CCE28418.1  12 SVILPTYNERKNLPIITWLLNRTFTEsNLDWELIIVDDGSPDGTQEVANQLVKAyAPHVVLKPR-AGKLGLGTAYVHGLQFTTGNFVIIMDADF 104
                      89**********9999999999988545678************999988876651567777766.457999999999***************96 PP

  Glyco_tranf_2_2  93 fis 95 
                         
       CCE28418.1 105 SHH 107
                      554 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     1e-08   4.6e-05      29     116 ..      92     181 ..      81     187 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1e-08
  Glyco_transf_21  29 akydllvisDsdvrvkpdyLeellaaledpkvglVtslpvgsdakglaaaleaaflntlagvlqakls..glgfavGksmalrreaLeai 116
                         ++++i D+d    p+++ +++a  ++ +  +Vt++ ++ d   ++ +l++ f++ +a++++ ++   g++  +G++ ++++++Le++
       CCE28418.1  92 TTGNFVIIMDADFSHHPKFIPQMVALQAKGNYDIVTGTRYAGDGGVFGWDLKRKFVSRGANLFADTVLrpGVSDLTGSFRLYKKSVLEKV 181
                      56689***************************************************9999999994433599***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2093.29
//
Query:       CCE28419.1  [L=170]
Description: uncharacterized protein CPUR_01894 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1298.93
//
Query:       CCE28420.1  [L=18]
Description: uncharacterized protein CPUR_01895 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (18 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        99  (0.00552178); expected 358.6 (0.02)
Passed bias filter:                       89  (0.00496402); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 151.41
//
Query:       CCE28421.1  [L=170]
Description: uncharacterized protein CPUR_01896 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1279.32
//
Query:       CCE28422.1  [L=119]
Description: uncharacterized protein CPUR_01897 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 873.43
//
Query:       CCE28423.1  [L=70]
Description: uncharacterized protein CPUR_01898 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 552.95
//
Query:       CCE28424.1  [L=195]
Description: uncharacterized protein CPUR_01899 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-60  203.9   0.1    2.8e-60  203.6   0.1    1.0  1  Methyltransf_PK  AdoMet dependent proline di-methyltransferas
    5.5e-07   30.2   0.0    8.2e-07   29.7   0.0    1.2  1  Methyltransf_25  Methyltransferase domain
    4.6e-05   23.3   0.0    6.4e-05   22.8   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    0.00014   22.5   0.0     0.0002   21.9   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.013   16.2   0.0      0.024   15.4   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
      0.019   14.3   0.3      0.037   13.3   0.3    1.5  1  Methyltransf_2   O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.6   0.1   9.4e-64   2.8e-60       7     181 ..      17     192 ..      12     194 .. 0.94

  Alignments for each domain:
  == domain 1  score: 203.6 bits;  conditional E-value: 9.4e-64
  Methyltransf_PK   7 ekaiaYWesveadvdGvLGGy......gavskiDvkgsrkflkklkkeslpgkrevkvaldcGaGiGrvtknlLlkllskvDlvepvekfleka 94 
                      + +i+YW++++ad+dG+LGG+      +++s+iD++gsr+fl++l + ++ g r vk ++d+GaGiGr+tk lLl++  +vD++epv+kf++++
       CCE28424.1  17 QAGIKYWNNISADEDGMLGGVpswegfESISRIDLQGSRTFLARLGIGTQRGRRCVKSVVDAGAGIGRITKGLLLHISDQVDVIEPVAKFTDTL 110
                      6799****************98887555****************************************************************** PP

  Methyltransf_PK  95 keelaeekkkvgkvyvvglqeftPeeg.rYdliWiqWcvghLtDedlvaflkrckkalkpn.GlivvkenvakeekdelDkeDssvtrs 181
                      +     ++  +g v++vglq++ P+ g +Yd+iW+qWc+ghL D+++v +l+ ck+ l+p+ G+ivvken++++++  +D+eDssvtrs
       CCE28424.1 111 H-----GQAGIGTVFNVGLQDWQPQPGaEYDIIWTQWCLGHLKDAEVVTYLQTCKTVLRPDsGVIVVKENISTSDV--FDEEDSSVTRS 192
                      *.....67999*************96538******************************9769*********9985..**********7 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   2.7e-10   8.2e-07       1      96 [.      75     166 ..      75     166 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.7e-10
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      v+d+G+G Gr+t+ l+ ++ + +v  +++ +++ ++ + +a   g+   f +g  +  p++ +++D+++ + +l hl+d+++ ++l+ ++ vL+
       CCE28424.1  75 VVDAGAGIGRITKGLLLHI-SDQVDVIEPVAKFTDTLHGQA---GIGTVFNVGLQDWQPQPGAEYDIIWTQWCLGHLKDAEVVTYLQTCKTVLR 164
                      89**************998.6******************99...7777777776666789999*******999********************* PP

                      EE CS
  Methyltransf_25  95 pg 96 
                      p+
       CCE28424.1 165 PD 166
                      96 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.1e-08   6.4e-05      20     119 ..      69     174 ..      51     191 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.1e-08
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae.....kakkaqkdqfdeqeaae.pqgkfdlIvlrevlehvpd..ppellrq 104
                      +r  ++v+d G+G G+ ++ l  +   +v+++++  +  + +      ++ +++  q     +++ p + +d+I    +l+h++d  +  +l++
       CCE28424.1  69 RRCVKSVVDAGAGIGRITKGLLLHISdQVDVIEPVAKFTDTLHgqagiGTVFNVGLQD----WQPqPGAEYDIIWTQWCLGHLKDaeVVTYLQT 158
                      455679*********9988886665558999999755444444777555555555555....4442677***************977889**** PP

  Methyltransf_23 105 iatllkpg.Gylllse 119
                       +t l+p+ G++++ e
       CCE28424.1 159 CKTVLRPDsGVIVVKE 174
                      *******99***9987 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.7e-08    0.0002       1      92 [.      76     167 ..      76     172 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 6.7e-08
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvLkpg 91 
                      +d+G+G Gr+++ l  +   +v  +++ ++++++ + +a    + +++  +d +  p + + +D+++ +++l h+  +++  +l+ ++ vL+p+
       CCE28424.1  76 VDAGAGIGRITKGLLLHIsDQVDVIEPVAKFTDTLHGQAGIGTV-FNVGLQDWQ--PQPGAEYDIIWTQWCLGHLkdAEVVTYLQTCKTVLRPD 166
                      599************66667787888888888776555555443.333334444..999****************888999************8 PP

                      E CS
  Methyltransf_11  92 G 92 
                       
       CCE28424.1 167 S 167
                      5 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   7.9e-06     0.024       1      96 [.      76     166 ..      76     169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.9e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirkl 92 
                      ++ G+G G++++ ll + +  ++ ++++ +++  d+    a ++   + nv l++ +    ++g+ +D+++   +l hl  +++  +l+ ++ +
       CCE28424.1  76 VDAGAGIGRITKGLLLH-ISDQVDVIEPVAKFT-DTLHGQAGIG--TVFNVGLQDWQ---PQPGAEYDIIWTQWCLGHLkdAEVVTYLQTCKTV 162
                      589**************.777788888888888.5555555555..45566665555...45668**************6666679******** PP

  Methyltransf_12  93 Lkpg 96 
                      L+p+
       CCE28424.1 163 LRPD 166
                      ***7 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   1.2e-05     0.037     124     171 ..     129     178 ..      65     192 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
                     ---..--SEEEEESSGGGS-HHHHHHHHHHHHHH--TT-EEEEEE----T CS
  Methyltransf_2 124 slP..eaDaillkrvlhDwsdekcvklLkrvkkalpagGkvivveavlga 171
                     + P  e D+i  ++ l   +d+++v+ L+ +k  l+++ +vivv+  +++
      CCE28424.1 129 PQPgaEYDIIWTQWCLGHLKDAEVVTYLQTCKTVLRPDSGVIVVKENIST 178
                     445225599999************************99999999876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1557.39
//
Query:       CCE28425.1  [L=351]
Description: uncharacterized protein CPUR_01900 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-06   26.7  11.5        4.4    7.9   0.3    5.3  5  CAAP1       Caspase activity and apoptosis inhibitor 1
     0.0066   17.1  13.2     0.0066   17.1  13.2    3.1  3  Forkhead_N  Forkhead N-terminal region
  ------ inclusion threshold ------
        1.4    8.2   6.7        2.2    7.6   1.4    2.1  2  RE_HpaII    HpaII restriction endonuclease


Domain annotation for each model (and alignments):
>> CAAP1  Caspase activity and apoptosis inhibitor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.4     0.002        12      22      62 ..     126     171 ..     124     172 .. 0.58
   2 !    7.4   0.3     0.001       6.2      21      56 ..     176     211 ..     172     217 .. 0.61
   3 !    7.9   0.3   0.00073       4.4      12      56 ..     199     243 ..     196     261 .. 0.75
   4 !    5.2   0.0    0.0053        32      21      57 ..     267     303 ..     262     307 .. 0.89
   5 !    6.4   0.0    0.0022        13      21      57 ..     309     345 ..     304     348 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.002
       CAAP1  22 lkekklkkllPdiLKklsleelkelC.....leqLeglskkrllsI 62 
                 l+e++l++ll + +++ s  +++ l      l++++++s++ ++s+
  CCE28425.1 126 LAEQDLQSLLHQGMQSFSHRDIQSLSlqdmsLQDIQSMSHQDIQSM 171
                 6677777777777777777666655410000455667777777665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.001
       CAAP1  21 vlkekklkkllPdiLKklsleelkelCleqLeglsk 56 
                 +l+++++++l P+ +++ls ++++ l  + +++ls 
  CCE28425.1 176 SLSPQDMQSLSPQNMRSLSPQDMQSLSPQNMRSLSP 211
                 566666666666666666666666666666555554 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.00073
       CAAP1  12 eelleqlFkvlkekklkkllPdiLKklsleelkelCleqLeglsk 56 
                 + l  q  ++l++++++ l P+ +++ls ++++ l  +++++ls+
  CCE28425.1 199 QSLSPQNMRSLSPQDMQPLSPQDMRSLSPQDMRSLSPQDIQSLSH 243
                 566667777777888888888888888877777777777777765 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.0053
       CAAP1  21 vlkekklkkllPdiLKklsleelkelCleqLeglskk 57 
                 +++ ++++ +  + ++ +s ++++   l+ ++++s++
  CCE28425.1 267 SISYEDIQTMSSQAIQAISNQDMQSVSLQAIQSMSNQ 303
                 67788999999999999*********99999999987 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0022
       CAAP1  21 vlkekklkkllPdiLKklsleelkelCleqLeglskk 57 
                 +++ ++++++  + ++ +s ++++   l+ ++++s++
  CCE28425.1 309 SISYEEIQSMSSQAIQAISNQDMQSVSLQAIQSMSNQ 345
                 6788999999999999999999999999999999987 PP

>> Forkhead_N  Forkhead N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3      0.72   4.3e+03      59      61 ..      70      72 ..      22      97 .. 0.54
   2 !   17.1  13.2   1.1e-06    0.0066      17     124 ..     159     266 ..     136     272 .. 0.56
   3 !    7.0   8.8    0.0014       8.5       5      69 ..     272     343 ..     267     351 .] 0.43

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.72
                XXX CS
  Forkhead_N 59 gms 61
                 ms
  CCE28425.1 70 AMS 72
                111 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.1e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXX.XXXXXXXXX.XXXXXXXXXXXXXXXX.XXXXX..XXXXXXXXXXX....XXXXXXXXXXX CS
  Forkhead_N  17 smnsMstyvamnssqasatssanmngyagaaamngmssssmtgmssgyasagsplgmmgmssmss.slspsgtmgamgsapags..remgslspnsams 112
                  + sMs    +++  ++ ++s + +++ +++ m ++s++ m+++s++ +   sp  m  +s+  + slsp+  m +++++  +s  + ++sl pn++ +
  CCE28425.1 159 DIQSMSHQDIQSML-CAQSLSPQDMQSLSPQNMRSLSPQDMQSLSPQNMRSLSPQDMQPLSPQDMrSLSPQD-MRSLSPQDIQSlsHHIESL-PNQDID 254
                 33333333322222.222233333366666777777777777777777666777777777777777777775.7776666433300334444.457888 PP

                 XXXXXXXXXXXX CS
  Forkhead_N 113 rasaqsnlnrar 124
                 ++s+q++ +r+r
  CCE28425.1 255 SMSNQNQDERRR 266
                 888865555555 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0014
                 XX.XXXXXXXX....XXXXXXXXXXXXXXX...XXXXX...XXXXXXXXXX....XXXXX.XXXXXXXXX.XXXX CS
  Forkhead_N   5 easeayssvsn....ysmnsMstyvamnss...qasat...ssanmngyagaaamngmssssmtgmssgyasags 69 
                 + +++ s++ +    + m s+s+ + +++s   +       +s+   ++++++a+ ++s + m++ s +  + +s
  CCE28425.1 272 DIQTMSSQAIQaisnQDMQSVSLQAIQSMSnqdE---RrrsISYEEIQSMSSQAIQAISNQDMQSVSLQAIQSMS 343
                 4444444433224444455554444443332121...12334444445555555555555555555544433332 PP

>> RE_HpaII  HpaII restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.4   0.00037       2.2      49     106 ..     245     302 ..     231     303 .. 0.85
   2 ?    6.0   0.8    0.0011       6.5      58     106 ..     296     344 ..     291     349 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00037
    RE_HpaII  49 leykieedekiiivkkkkeeeveipreefekaaelllneikkakkeeveieeveefld 106
                 +e   ++d ++++ ++++e++++i+ e++++++++ +++i ++  ++v+++ ++++ +
  CCE28425.1 245 IESLPNQDIDSMSNQNQDERRRSISYEDIQTMSSQAIQAISNQDMQSVSLQAIQSMSN 302
                 555667887888888888888****************************999998765 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0011
    RE_HpaII  58 kiiivkkkkeeeveipreefekaaelllneikkakkeeveieeveefld 106
                  i+++++++e++++i+ ee+++++++ +++i ++  ++v+++ ++++ +
  CCE28425.1 296 AIQSMSNQDERRRSISYEEIQSMSSQAIQAISNQDMQSVSLQAIQSMSN 344
                 5778889999999***************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1421  (0.0792571); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2515.96
//
Query:       CCE28426.1  [L=111]
Description: uncharacterized protein CPUR_01901 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 846.09
//
Query:       CCE28427.1  [L=751]
Description: related to transcription factor IIIB [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.7e-30  102.8   0.4    2.5e-19   69.1   0.1    2.6  2  TFIIB        Transcription factor TFIIB repeat
    5.7e-24   84.4   1.6    5.7e-24   84.4   1.6    3.7  4  BRF1         Brf1-like TBP-binding domain
    0.00094   18.9   0.6      0.019   14.7   0.1    2.2  2  Cyclin_N     Cyclin, N-terminal domain
  ------ inclusion threshold ------
      0.093   13.0   0.0        1.4    9.2   0.0    2.5  2  zf-AD        Zinc-finger associated domain (zf-AD)
      0.097   12.7   0.0       0.26   11.3   0.0    1.6  1  Thioredoxin  Thioredoxin


Domain annotation for each model (and alignments):
>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   3.8e-11   1.4e-07       4      66 ..     152     215 ..     149     220 .. 0.90
   2 !   69.1   0.1   7.1e-23   2.5e-19       1      71 []     247     320 ..     247     320 .. 0.97

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 3.8e-11
                 HHHHTT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTT.SS--HHHHHHHSS- CS
       TFIIB   4 fadaleLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkee.vkrtqkeissvlqV 66 
                  a++l+ ++    a ++++kla+  ++++Gr  a++ A cly Acr+e   k ++++ ++++q 
  CCE28427.1 152 YAQQLNVSDSLVTAGTQVFKLASGANFIQGRTLASVSAVCLYAACRAEPpCKIMLIDLADLVQL 215
                 6899******************************************995378899999988876 PP

  == domain 2  score: 69.1 bits;  conditional E-value: 7.1e-23
                 HHHHHHHTT--H...HHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--SHHH CS
       TFIIB   1 ikrfadaleLpe...kVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVsekti 71 
                 i rfa ++e+ +   kVa++A+ l+k++++++++ Gr+p gi +Acl++A+r+ +++rt +e++ +++V++ ti
  CCE28427.1 247 IWRFATKMEFHQdtaKVAEDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTI 320
                 569*******99999********************************************************998 PP

>> BRF1  Brf1-like TBP-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3       1.1   3.9e+03      34      51 ..      32      49 ..      27      72 .. 0.50
   2 ?    4.6   1.5     0.011        40      45      80 ..     359     395 ..     338     407 .. 0.50
   3 ?   -1.9   0.4       1.2   4.4e+03      53      68 ..     480     495 ..     456     522 .. 0.45
   4 !   84.4   1.6   1.6e-27   5.7e-24       2     101 .]     565     664 ..     564     664 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.1
        BRF1 34 eeqeekrlkeeaeeaead 51
                +e+ee+r+++ a++ +++
  CCE28427.1 32 REREERRQAQVASQSQSA 49
                344444444444444411 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.011
        BRF1  45 aeeaeadkkkkkkkrkrkkkekkk.gepetaaeavkk 80 
                  ee+++d+++k++krkr+++ + + +e+e a++ + +
  CCE28427.1 359 LEENKKDANGKSRKRKRNATGDAEdEEDEDAEDPADS 395
                 3333333444444444444433331333555544444 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.2
        BRF1  53 kkkkkkrkrkkkekkk 68 
                  ++  ++++ k +++ 
  CCE28427.1 480 AETGSQQRTGKGKQRA 495
                 1111111112211111 PP

  == domain 4  score: 84.4 bits;  conditional E-value: 1.6e-27
        BRF1   2 diddd.eideyllseeevkiKeriWvelnkeyLeeqeekrlkeeaeeaeadkkkkkkkrkrkkkekkkgepetaaeavkkmlekkklskkINydaLekL 99 
                 ++ dd e+ ++lls++e++iKe iWv++nk++L++++ek  +++ e+++  k+++++k++ +  e +++  ++aaea+ ++ + +++sk+INyda++++
  CCE28427.1 565 EFADDpEVINCLLSPDEARIKELIWVNQNKDWLRQHQEKVFRRKVEAER-PKQTRRRKKQARMGEGQTSPANSAAEAAINVAKDRAWSKRINYDAIRSI 662
                 566666***********************************99999999.444555555555555555555**************************** PP

        BRF1 100 fd 101
                 fd
  CCE28427.1 663 FD 664
                 96 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.044   1.6e+02      66      97 ..     177     208 ..     146     225 .. 0.71
   2 !   14.7   0.1   5.3e-06     0.019      36     104 ..     245     315 ..     244     342 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.044
                 S---CCCHHHHHHHHHHHHHHHHSSS---HHH CS
    Cyclin_N  66 ksvpkdklqlvgatcLllAaKveeisppkled 97 
                 + ++ ++l  v a+cL+ A++ e  +   l d
  CCE28427.1 177 NFIQGRTLASVSAVCLYAACRAEPPCKIMLID 208
                 4566678999***********98766444444 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 5.3e-06
                 HHHHHHHHHTT--TTHHHH...HHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHHHHTTT CS
    Cyclin_N  36 dwlvevaekfkltpetlfl...avnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlvyitde 104
                 d +++ a+k++++++t+ +   av+++ R+ +   v  ++   ++ +cLl+Aa++++ +  +++++vyi++ 
  CCE28427.1 245 DLIWRFATKMEFHQDTAKVaedAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFR-RTVREVVYIVKV 315
                 678999999999999988733469********************************995.99******9853 PP

>> zf-AD  Zinc-finger associated domain (zf-AD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.19   6.6e+02       1      12 [.      81      90 ..      81     110 .. 0.70
   2 ?    9.2   0.0   0.00039       1.4      45      69 ..     285     309 ..     260     314 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.19
       zf-AD  1 vCRlCl..seesee 12
                +CR+C+       +
  CCE28427.1 81 TCRTCGrvA----D 90
                6****9431....2 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00039
       zf-AD  45 pekiCesCleklqefyeFrekcvea 69 
                 p  iC  Cl    ++++Fr++++e+
  CCE28427.1 285 PSGICGACLLMAARMHNFRRTVREV 309
                 677******************9985 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.2e-05      0.26      29      72 ..     288     331 ..     285     339 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.2e-05
                  TSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SS CS
  Thioredoxin  29 wCghCkalaPeleklaeelkdkvklakvdvdenedlakkyeveg 72 
                   Cg C  +a +++++ +++++ v ++kv +++ ++  ++++v+ 
   CCE28427.1 288 ICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRLQEFNVTE 331
                  6****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1265  (0.0705561); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 5276.47
//
Query:       CCE28428.1  [L=189]
Description: uncharacterized protein CPUR_01903 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-24   85.4   0.1    4.5e-24   85.1   0.1    1.0  1  DUF1349   Protein of unknown function (DUF1349)


Domain annotation for each model (and alignments):
>> DUF1349  Protein of unknown function (DUF1349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.1   2.5e-28   4.5e-24      17     176 ..       6     186 ..       4     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 2.5e-28
                 EEE--TT--EEESTTT--EEE--E.EEE.EEESS-.EEEEEEEEE---STT-EEEEEEEEE...TTEEEEEEEEE-SSSEEEEEEEEESSEEEEEEE-- CS
     DUF1349  17 eittepktDfWrrthygfrrdnap.fll.tevagd.ftaevkvkgefkelyDqaGlmlrvd...eenWlKagieyndgaprlgsVvtngysDwsvsplp 109
                 +  ++p+tD+W+++ ++ + ++ap   + + ++ +  +a++++ +++++++DqaG+++      +++W+K g+e+ ++aprl++V t++ysDwsvs+ +
  CCE28428.1   6 TFAADPNTDIWKKPPTH-NVFSAPhRPHsKGPSLKfISATLTFIATYTHQFDQAGILFTYTngsDRKWIKSGVELFNDAPRLSTVCTDNYSDWSVSEPS 103
                 56799********9997.444444044445555565899999999************99987889********************************77 PP

                 S....B..TTSEEEEEEEETTEEEEE...EESSSS---EEEEEE--.....S-S-EEEEEEEE-SS-...S--EEEEEEEEEE CS
     DUF1349 110 s....ev.skevwlrlsrrgddlaie...ysldgenwkllRlfhld.....adeevkvGvyacsPkr...egfevtFsefele 176
                 +     +  k v++ ++r +d+l i    y  dg n + lR ++ +     ++ e++v +  ++P +   + +e+tF++f ++
  CCE28428.1 104 DgdaiRTgCKPVTITVERMDDELGISlwvYHVDGSNRTPLREITWPygtagDGWELEVSAAIARPYKdtqDKMEATFQHFDVK 186
                 79988666799************997444679*********9999756654449***********8866679*******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1483.13
//
Query:       CCE28429.1  [L=496]
Description: related to monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-11   42.1   0.0    9.2e-10   38.3   0.0    2.1  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    8.6e-11   40.9   0.1    1.1e-09   37.3   0.1    2.4  1  FMO-like       Flavin-binding monooxygenase-like
    1.3e-09   38.2   0.0    2.1e-07   31.0   0.0    2.6  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      7e-09   35.3   0.0      2e-07   30.6   0.0    2.4  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    7.4e-07   28.7   0.1    1.5e-05   24.3   0.0    2.5  3  Thi4           Thi4 family
    2.1e-05   24.3   3.5     0.0002   21.0   0.1    3.1  3  DAO            FAD dependent oxidoreductase
    5.6e-05   23.6   0.1        1.1    9.9   0.0    3.8  4  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    6.8e-05   22.2   1.7      0.049   12.8   0.1    4.3  5  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
     0.0042   16.2   0.2      0.047   12.8   0.0    2.1  2  GIDA           Glucose inhibited division protein A
     0.0049   16.9   0.3        2.9    7.9   0.0    3.3  3  NAD_binding_9  FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.012   14.7   0.1      0.026   13.6   0.0    1.6  2  FAD_binding_2  FAD binding domain
      0.019   15.1   0.0       0.14   12.2   0.0    2.3  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
      0.025   14.0   0.0      0.057   12.8   0.0    1.6  1  FAD_oxidored   FAD dependent oxidoreductase
      0.039   13.0   0.2        1.1    8.2   0.0    2.7  3  Lycopene_cycl  Lycopene cyclase protein
      0.048   14.1   0.1       0.14   12.7   0.0    1.7  1  NAD_binding_7  Putative NAD(P)-binding
      0.072   11.8   0.0        0.2   10.3   0.0    1.8  1  HI0933_like    HI0933-like protein


Domain annotation for each model (and alignments):
>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   8.2e-13   9.2e-10       1     206 [.      14     233 ..      14     262 .. 0.82
   2 ?    1.5   0.0      0.13   1.5e+02     237     271 ..     334     363 ..     301     383 .. 0.71

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 8.2e-13
  Pyr_redox_3   1 iIiGaGPaGlaaaielkka.gledylilEkg.nignsiyryp.....kemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlreva 91 
                  i+iGaG  G++aa+ +++    ++y+ilE   +ig ++  ++      +  +++ sf  + +  p   a  ee    ++ + e +  +e  ++ ++v 
   CCE28429.1  14 IVIGAGVSGINAAYRIQQRlPDKTYTILESRdTIGGTWDLWRypgirSDSDVFTFSFAWNPWPEPTTLASGEEFRKYLTQSVELAGIDEHIQFKQQVF 111
                  89************9987516689*****988****9987642244357899**********9999878877777777788888999*********** PP

  Pyr_redox_3  92 ksfelpiklfeeVesvkke..degfevetsketyeAkkviiAtGefdk..PnklnipGeek...lvkhyskvkefhkyagqkvvViGgknSavDaAle 182
                  + + ++   + e++  +k+  d + + +   ++++++++++ tG++d+  P ++ ipG ++   + ++ +  ++  ++a++++v+iG + +a  +   
   CCE28429.1 112 SANWVSLGRYWEITVRNKDvgDAHQQGQEALQVFRSRFIFLGTGYYDYeePFQTLIPGLDQfegKLIRPQFWPAEYDFADKEMVIIGSGATATSILPA 209
                  ************99888852144444444557*************9864488999***9976445667777788889********************* PP

  Pyr_redox_3 183 lvrkgaeVtvvtrgseiekeesdp 206
                  ++++ ++Vt+v r+ ++    ++ 
   CCE28429.1 210 VAKQVKHVTLVQRSPTWYVFATQH 233
                  **************9997765444 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.13
  Pyr_redox_3 237 eikekeeeykvktedgkkvevkddvvlatGykpdl 271
                   +++      vk+ +g++v++ d +v+atG+k ++
   CCE28429.1 334 TVTK----DGVKMVSGHQVSA-DVIVAATGFKLKF 363
                  3333....2466677777654.666666**99765 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   9.4e-13   1.1e-09       4     222 ..      13     230 ..      11     365 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 9.4e-13
    FMO-like   4 vaviGaGvsGlasikcclee..gleptcfersddiGGlwrfkenveeGrasiyksvvsnsskemscfsdfplpedypnflhnsklleylklfakefdll 100
                 v viGaGvsG+ +     +   +   t +e  d iGG w +           y  + s+s      f+  p pe        +++ +yl +  +  ++ 
  CCE28429.1  13 VIVIGAGVSGINAAYRIQQRlpDKTYTILESRDTIGGTWDLWR---------YPGIRSDSDVFTFSFAWNPWPEP-TTLASGEEFRKYLTQSVELAGID 101
                 7899999999987544333211445688999999999887765.........34444444444556777777774.34567899*************** PP

    FMO-like 101 kyiqfkttvcsvkkrpdfstsGqwevv........tekegkkesavfda..vmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlvi 189
                  +iqfk +v s +     s    we++        ++++g++  +vf +  + + tG++ + +  +   pG+++f G+++  + +     f +k +++i
  CCE28429.1 102 EHIQFKQQVFSANWV---SLGRYWEITvrnkdvgdAHQQGQEALQVFRSrfIFLGTGYYDYEEPFQTLIPGLDQFEGKLIRPQFWPAEYDFADKEMVII 197
                 *********998764...344455554111111112345777789**8733667899999988778889****************************** PP

    FMO-like 190 GlGnsggdiavelsrtaeqvllstrsGswvlsr 222
                 G G +++ i   ++++ ++v l  rs +w +  
  CCE28429.1 198 GSGATATSILPAVAKQVKHVTLVQRSPTWYVFA 230
                 *****************************7643 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.9e-10   2.1e-07       1      47 [.      15      63 ..      15      75 .. 0.90
   2 ?    4.3   0.0     0.041        46       1      28 [.     196     223 ..     196     225 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.9e-10
                   EE--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSGGG-EECETTCEECT CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfdvlllekrdrlGGraasyevpgvrvdy 47
                   ++GaG+sG  aAy+++++  ++  ++le+rd +GG +  +++pg+r d 
     CCE28429.1 15 VIGAGVSGINAAYRIQQRlpDKTYTILESRDTIGGTWDLWRYPGIRSDS 63
                   8****************999**********************9987665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.041
                    EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekr 28 
                    I+G+G+++ ++  + ak+ ++v+l++++
     CCE28429.1 196 IIGSGATATSILPAVAKQVKHVTLVQRS 223
                    9***********************9886 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.8e-10     2e-07       1     179 [.      11     230 ..      11     247 .. 0.66
   2 ?    2.1   0.0     0.084        95      82     238 ..     331     360 ..     305     388 .. 0.67

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.8e-10
                  CSEEEE--SHHHHHHHHHHHH.HTS-EEEE.................E...TTHCHHHCSHHHHCHHHHHHHHHHHHH.................... CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.................x...xxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaq.agakvtlv.................e...legtclnggcllskallgvaedaeias.................... 57 
                  +dv+viG+G+ G++aa +++q    k++ +                 +   +                  ++     +                    
   CCE28429.1  11 FDVIVIGAGVSGINAAYRIQQrLPDKTYTIlesrdtiggtwdlwrypGirsD------------------SDVF---Tfsfawnpwpepttlasgeef 87 
                  69*******************7577777775444444433333333303331..................2222...222344455444444444444 PP

                  ...................HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC.TCEEEEEESEEEE---E....EE-BCTCTTC.TTBEECCSECH CS
                  ...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ...................evvkklnqgielllgeevvkidpgkkkvklekkke.gdeekiaydklvlAtGs....sprdlgipGvaenvgklvrtld 131
                                     +   ++  +  ++    + +i   +k+v + ++++ +  + +    ++l tG     +p+   ipG+ +  gkl  +  
   CCE28429.1  88 rkyltqsvelagidehiqfK---QQVFSANWVSLGRYWEITVRNKDVGDAHQQGqEALQVFRSRFIFLGTGYydyeEPFQTLIPGLDQFEGKL--IRP 180
                  44558999888887442221...22222222222457777777777777776643333444458899****8899999999*****9999999..556 PP

                  HHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS..T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
  Pyr_redox_2 132 saealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll..r 179
                  +  + +++  +k +v++G+G++++ +  a ak  k+vtlv++ ++ +   
   CCE28429.1 181 QFWPAEYDFADKEMVIIGSGATATSILPAVAKQVKHVTLVQRSPTWYvfA 230
                  7777777778888******************************9988433 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.084
                  C.EEEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  82 k.kkvklekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  + ++v+    k  ++++                                                                                 
   CCE28429.1 331 SiETVTKDGVKMVSGHQ--------------------------------------------------------------------------------- 347
                  32333333333344444................................................................................. PP

                  TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 179 raldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvr 238
                                                                 + ad +v a+G++
   CCE28429.1 348 -----------------------------------------------VSADVIVAATGFK 360
                  ...............................................5566666666554 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.4e-08   1.5e-05      18      56 ..      11      50 ..       7      54 .. 0.91
   2 ?    0.7   0.0      0.22   2.5e+02      14      42 ..     188     214 ..     180     224 .. 0.79
   3 ?   -1.9   0.0       1.4   1.6e+03     151     172 ..     342     363 ..     322     374 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.4e-08
                EEEEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS--TT CS
        Thi4 18 sDvvivGaGssGLtaayylakk.pdlkvailersvspGGG 56
                 Dv+++GaG sG+ aay + ++ pd   +ile++ ++GG 
  CCE28429.1 11 FDVIVIGAGVSGINAAYRIQQRlPDKTYTILESRDTIGGT 50
                6*********************************999874 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.22
                 HHTEEEEEEE--SHHHHHHHHHHHHCTTS CS
        Thi4  14 kyaesDvvivGaGssGLtaayylakkpdl 42 
                 ++a+ ++vi+G+G++  +    +ak+  +
  CCE28429.1 188 DFADKEMVIIGSGATATSILPAVAKQ--V 214
                 79999********9998888888887..3 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
                 .-B-EEEEEEEEEE--GSSSTT CS
        Thi4 151 cvDPlvirakvvvdatGhdgei 172
                  v    + a v+v atG   ++
  CCE28429.1 342 MVSGHQVSADVIVAATGFKLKF 363
                 4556677888888888887666 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   1.8e-07    0.0002       1      36 [.      12      50 ..      12      52 .. 0.92
   2 ?    2.1   0.1       0.1   1.1e+02       3      31 ..     195     225 ..     193     298 .. 0.77
   3 ?   -0.6   0.0      0.67   7.5e+02     169     204 ..     328     361 ..     299     384 .. 0.65

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.8e-07
                EEEEECTSHHHHHHHHHHHHT.T...EEEEESSSSTTSSG CS
         DAO  1 dvviiGGGiiGlstAyeLarr.g...Vtllekgdiagsga 36
                dv++iG+G+ G+ +Ay  ++r +    t+le++d +g g+
  CCE28429.1 12 DVIVIGAGVSGINAAYRIQQRlPdktYTILESRDTIG-GT 50
                8*****************9998568********9999.76 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.1
                 EEECTSHHHHHHHHHHHHT.T.EEEEESSSS CS
         DAO   3 viiGGGiiGlstAyeLarr.g.Vtllekgdi 31 
                 viiG+G +  s+  + a++ + Vtl+ +++ 
  CCE28429.1 195 VIIGSGATATSILPAVAKQvKhVTLVQRSPT 225
                 9***************998658****99854 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.67
                 EEE.EEEEETCEEEEEEECT.EEEEEEEEEEE--GGGH CS
         DAO 169 vtg.leeedgkvwgverttp.gendaadavVnaaGaws 204
                 vt+ +e       gv+     g++++ad +V a+G   
  CCE28429.1 328 VTDsIETVT--KDGVK--MVsGHQVSADVIVAATGFKL 361
                 333232222..13331..11265646699999999664 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00095       1.1       2      35 ..      13      48 ..      12      52 .. 0.84
   2 !    8.4   0.0    0.0028       3.1       2      33 ..     194     225 ..     193     236 .. 0.93
   3 ?   -2.1   0.0       5.2   5.8e+03      48      64 ..     333     349 ..     325     354 .. 0.74
   4 ?   -0.6   0.0       1.9   2.1e+03      46      59 ..     420     433 ..     408     435 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00095
                EEEECSSHHHHHHHHHHHH.TTSEE.EEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalae.lgkkV.tvversdkll 35
                v+v+G+G++g+ +A  +++ l +k+ t++e +d++ 
  CCE28429.1 13 VIVIGAGVSGINAAYRIQQrLPDKTyTILESRDTIG 48
                89**************96647777769999999987 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0028
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdk 33 
                 +v++G+G ++     a a+  k+Vt+v+rs++
  CCE28429.1 194 MVIIGSGATATSILPAVAKQVKHVTLVQRSPT 225
                 79***************************986 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 5.2
                 HHHHHTTEEEECSEEEE CS
   Pyr_redox  48 eklekngievllntkve 64 
                 e ++k g++++ +++v 
  CCE28429.1 333 ETVTKDGVKMVSGHQVS 349
                 44567788888888875 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.9
                 HHHHHHHTTEEEEC CS
   Pyr_redox  46 lqeklekngievll 59 
                 l+++lek+g+ + +
  CCE28429.1 420 LMRQLEKQGVSMAT 433
                 7899******9876 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.028        31     193     222 ..      12      41 ..       6      49 .. 0.68
   2 !   12.8   0.1   4.4e-05     0.049      93     228 ..      82     226 ..      76     262 .. 0.68
   3 ?    0.2   0.0      0.28   3.2e+02     326     341 ..     345     360 ..     324     361 .. 0.80
   4 ?   -0.7   0.0      0.55   6.1e+02      28      56 ..     371     399 ..     366     399 .. 0.81
   5 ?   -2.3   0.0       1.6   1.8e+03     202     229 ..     412     439 ..     409     460 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.028
  K_oxygenase 193 riaVvGsGqSaaeifedllrrqkkvelklv 222
                  +++V+G+G S+ + ++ + +r ++++ +++
   CCE28429.1  12 DVIVIGAGVSGINAAYRIQQRLPDKTYTIL 41 
                  477777777777777777777666555554 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.4e-05
  K_oxygenase  93 psRkefedYlrWva..sqleeqvrfgeeveevepdeeeeeelltveskd.....aegeee..elearnlvlgvGtepkiPevlekle....gkervvH 177
                   s +ef +Yl   +  + ++e+++f+++v + ++++  +    tv++kd     ++g+e    +++r + lg+G   +  + +++l     + e  + 
   CCE28429.1  82 ASGEEFRKYLTQSVelAGIDEHIQFKQQVFSANWVSLGRYWEITVRNKDvgdahQQGQEAlqVFRSRFIFLGTGYYDYEEP-FQTLIpgldQFEGKLI 178
                  5678999999887622579999************9976546678877765432233333233789999******7655322.3333301112222222 PP

  K_oxygenase 178 sseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrseal 228
                    ++   +  + a k+++++GsG +a  i+  ++++ k  +++lv rs+  
   CCE28429.1 179 RPQFWPAE-YDFADKEMVIIGSGATATSILPAVAKQVK--HVTLVQRSPTW 226
                  33444433.48999********************9998..67788887753 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.28
  K_oxygenase 326 eetlevdavvlATGYr 341
                   +++++d++v ATG++
   CCE28429.1 345 GHQVSADVIVAATGFK 360
                  467899********97 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.55
  K_oxygenase  28 lkalflerqpefaWhpgmllegaelqisf 56 
                  l+ + ++ +++faW + ml +  +l  sf
   CCE28429.1 371 LDNVAVDATKKFAWKASMLQDVPNLVFSF 399
                  66788999**********99877776665 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 1.6
  K_oxygenase 202 Saaeifedllrrqkkvelklvtrseale 229
                   aae++  l+r+ +k+ +++ t +   +
   CCE28429.1 412 CAAEVLIRLMRQLEKQGVSMATPRLDPK 439
                  599*********9999999988775554 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.2e-05     0.047       1      20 [.      12      31 ..      12      50 .. 0.79
   2 ?    1.3   0.1      0.13   1.4e+02     115     150 ..     329     359 ..     319     382 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.2e-05
                CEEEE-SSHHHHHHHHHHHH CS
        GIDA  1 dviViGgGhAGceAAlaaar 20
                dviViG+G +G+ AA+ + +
  CCE28429.1 12 DVIVIGAGVSGINAAYRIQQ 31
                8***************9976 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.13
                 ES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 115 eeeveeliveekkvkgvvtedgetikakavviatGt 150
                 ++++e +        gv++ +g++++a+++v atG 
  CCE28429.1 329 TDSIETVT-----KDGVKMVSGHQVSADVIVAATGF 359
                 44444443.....379*******************5 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0026       2.9       2      43 ..      15      52 ..      14     129 .. 0.75
   2 ?    3.8   0.0     0.046        51       1      37 [.     195     226 ..     195     240 .. 0.78
   3 ?    1.3   0.1      0.27     3e+02     123     154 ..     331     358 ..     316     360 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0026
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwr 43
                   ++GaG++G+ ++ r+ +r     + + t+ + + +  g+ w+
     CCE28429.1 15 VIGAGVSGINAAYRIQQRL---PDKTYTILESRDTI-GGTWD 52
                   8****************97...44455666666555.55665 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.046
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepg 37 
                    +i+G G++++++l +++++       ++tl+ +s+++
     CCE28429.1 195 VIIGSGATATSILPAVAKQV-----KHVTLVQRSPTW 226
                    7**************99996.....567777777766 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.27
  NAD_binding_9 123 evvdleeradgqavlladgaslaadaVvLAlG 154
                    +++ ++    +  v   +g+++ ad +v A+G
     CCE28429.1 331 SIETVT----KDGVKMVSGHQVSADVIVAATG 358
                    333333....33456689*************9 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.3e-05     0.026       1      21 [.      12      32 ..      12      52 .. 0.79
   2 ?   -4.0   0.1         5   5.6e+03       3      28 ..     195     220 ..     194     225 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.3e-05
                   SEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaea 21
                   DviViG+G++G  AA++++++
     CCE28429.1 12 DVIVIGAGVSGINAAYRIQQR 32
                   9*****************995 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5
                    EEE--SHHHHHHHHHHHHTTT-EEEE CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavv 28 
                    ++iGsG+   +   + a++ + v++v
     CCE28429.1 195 VIIGSGATATSILPAVAKQVKHVTLV 220
                    899*9997666555556666666665 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.7   1.9e+03      14      28 ..      12      26 ..       7      37 .. 0.77
   2 ?   12.2   0.0   0.00012      0.14       9      46 ..     188     224 ..     184     239 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.7
                  EEEEES-SHHHHHHH CS
  Shikimate_DH 14 kvlliGaGemaelva 28
                   v++iGaG  +  +a
    CCE28429.1 12 DVIVIGAGVSGINAA 26
                  699*****8776666 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00012
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSH CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtl 46 
                   ++++k++++iG G +a+ ++ + + k+vk+v+ + R+ 
    CCE28429.1 188 DFADKEMVIIGSGATATSILPAVA-KQVKHVTLVQRSP 224
                   5789*****************976.99*********86 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.1e-05     0.057       1      37 [.      12      50 ..      12      52 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.1e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAara..GakvlLveergvlGGl 37
                  Dv+V+G+g++G+ AA+   ++  +++  ++e r+ +GG+
    CCE28429.1 12 DVIVIGAGVSGINAAYRIQQRlpDKTYTILESRDTIGGT 50
                  9**************8877655599999**********7 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00099       1.1       1      40 [.      12      49 ..      12      68 .. 0.82
   2 ?    1.5   0.1      0.11   1.2e+02       2      41 ..     194     232 ..     193     331 .. 0.74
   3 ?   -1.4   0.0      0.81     9e+02     107     145 ..     323     362 ..     305     371 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00099
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpn 40
                   Dv+viGaG  g+  A r+ +  p+   +++e+ + +  ++
     CCE28429.1 12 DVIVIGAGVSGINAAYRIQQRLPDKTYTILESRDTI--GG 49
                   9*****************888888888888877766..44 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsl.lfpnn 41 
                    +v+iG+G+   s+   +  ak+  +v+l++ sp   +f+ +
     CCE28429.1 194 MVIIGSGATATSILPAV--AKQVKHVTLVQRSPTWyVFATQ 232
                    6999*999999999999..8999999999777764133333 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.81
  Lycopene_cycl 107 akvesveeeea..geslvvleggrkirarlvvdarglaslk 145
                    +k+  v+++ +  ++  v +  g+++ a ++v a+g ++lk
     CCE28429.1 323 GKASVVTDSIEtvTKDGVKMVSGHQVSADVIVAATG-FKLK 362
                    4444444332222567778889999********999.6655 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00012      0.14       4      79 ..     188     279 ..     186     289 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
  NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleagakvtvvapev........keele...........elvklaeeelekdlegadlviaatddrelneria 79 
                    d+ +k+++++G G  A++ +  ++++ ++vt+v            +   +            ++ ++ + +++  +  +lv+ a   + + ++i 
     CCE28429.1 188 DFADKEMVIIGSGATATSILPAVAKQVKHVTLVQRSPtwyvfatqH---SklasflaailpTRIAYRINRYRRLAQAHFLVCLAKYAPRIASAIL 279
                    789*****************************97776556664221...2355555555556666777777777888888888887777777765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00018       0.2       1      35 [.      11      47 ..      11      49 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
                 -SEEEE--SHHHHHHHHHHHHT..T--EEEE-SSSSS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakr..gkrVlllekakkl 35
                 +dviviG+G +G+ aA ++++r  +k  ++le+ +++
   CCE28429.1 11 FDVIVIGAGVSGINAAYRIQQRlpDKTYTILESRDTI 47
                 59**************999765226667777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 3677.27
//
Query:       CCE28430.1  [L=193]
Description: related to nodulin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.082   12.9   1.2        0.1   12.6   1.2    1.1  1  DUF1996   Domain of unknown function (DUF1996)


Domain annotation for each model (and alignments):
>> DUF1996  Domain of unknown function (DUF1996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.2   5.7e-06       0.1      19     102 ..      15      95 ..       6     139 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.7e-06
     DUF1996  19 gsafnasltyeelrkskctscevkeDkSnYWvptLYfkkengsferveqkggllvYYllekkkekkvtafpkgfrmiaGdptlr 102
                 +++++ s+  +++++s+  s +v++ kSn +vp  + k++  + ++ ++  ++ +YY   ++   +  +  ++ rm  +d  ++
  CCE28430.1  15 ANNVHISTIDNTTNSSNFQSSRVERPKSNAYVPRTFAKATIARESKQQAAADAAAYYEVAAD---AHARQEANHRMADADVYKT 95 
                 56666666555556778********************86444444444567899***99544...3455667777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1136  (0.063361); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1635.33
//
Query:       CCE28431.1  [L=543]
Description: related to n-alkane-inducible cytochrome P450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-56  190.9   0.0    4.5e-56  190.5   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.5   0.0   2.5e-60   4.5e-56      19     421 ..      72     469 ..      56     472 .. 0.84

  Alignments for each domain:
  == domain 1  score: 190.5 bits;  conditional E-value: 2.5e-60
                 TCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHH CS
        p450  19 keelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleel 117
                  ++  e  ++ +kkyg++fr ++  +++++ ++p+ +k vl  k   f +++    l+ +  p +g g++ ++g++w++ R ++ p++  + + +  + 
  CCE28431.1  72 AHKTLEEATERFKKYGNTFRSRQFLQSTIMTIEPDNIKTVLALK---FDDYGIGHRLKDFG-PLLGSGIFDTDGQHWHSSRALIRPNFARD-QVADLAA 165
                 45555668999*********************************...89999999999855.***************************99.5588899 PP

                 HHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHH CS
        p450 118 veeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklkeavkkl 216
                 +e+ + dl   + ++ ++   +d++++++++++d+ ++ lFg ++++l++   ++++  ++e ++  +    +  ll pl+ +  ++   k++ +++++
  CCE28431.1 166 FERLIPDLFSLIPRDGKTT--VDLQDIFFCYTIDSATEFLFGQSVGSLKKI--PDAEISFAEAFNCAQDAIRMRGLLGPLYIFGRDPKTAKCETICRDI 260
                 999999****999999999..*************************88887..5677777777777777777778888866666666666666655544 PP

                 H.HHHHHHHHHHHHCHCHC......SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCC CS
        p450 217 k.dlldklieerretldsa......kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlg 308
                 + ++++  ie  + + +s+      +k ++   ++ l  +       + +++ +  +++++l+aG dTt+s ls  ++ LaknP v +kl+ E+ +  g
  CCE28431.1 261 AqKFAEGAIEAVENQRRSQtddethEKPTKYVFSHELARR-------TSNKRRILDELMNVLLAGRDTTASLLSNLFFMLAKNPVVWAKLQAEVATLEG 352
                 3145555555555555555554454333333333344443.......67889********************************************999 PP

                 TTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEET..T.......EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTSCTES CS
        p450 309 dkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvir..g.......ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekgnskr 397
                 +   pt+++l kl+yl+ +++E+LR+hpvvp   +R++ kd+ ++  g       +++pkGt+++ ++ya+hr+ +++ p+++eF+peR++  k     
  CCE28431.1 353 R--LPTFEELRKLKYLRCCLNESLRIHPVVP-MNSRKAVKDTFLPlgGgpdgtspVFVPKGTRMVYSTYAMHRRTDLYgPDADEFRPERWETGKL---L 445
                 9..8***************************.666*****998854325667999**************************************87...9 PP

                 SCTT--TTEEGGGS-TTHHHHHHH CS
        p450 398 ksfaflPFGaGpRnCiGerlArme 421
                 +  ++lPF  GpR C+G++ A  e
  CCE28431.1 446 PRWEYLPFNGGPRVCLGQQYALTE 469
                 *******************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3920.46
//
Query:       CCE28432.1  [L=1904]
Description: uncharacterized protein CPUR_01907 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-07   30.1   0.3    0.00035   20.7   0.0    4.0  4  rve              Integrase core domain
      8e-06   25.6   0.2    2.3e-05   24.2   0.2    1.8  1  gag_pre-integrs  GAG-pre-integrase domain
    0.00089   19.0   7.3    0.00089   19.0   7.3    2.8  2  Collagen         Collagen triple helix repeat (20 copies)
  ------ inclusion threshold ------
      0.036   14.3   0.0        0.2   12.0   0.0    2.4  1  Retrotrans_gag   Retrotransposon gag protein


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.014        63      51     115 ..     108     170 ..      68     173 .. 0.76
   2 ?   -0.4   0.0      0.28   1.2e+03      60      82 ..     217     237 ..     212     260 .. 0.85
   3 ?   -3.1   0.0       1.9   8.4e+03      30      56 ..     528     556 ..     527     564 .. 0.73
   4 !   20.7   0.0   7.9e-08   0.00035      24     117 ..    1032    1126 ..    1017    1128 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.014
         rve  51 vlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdnGkvErfhrtl 115
                 +  l++r ++ f+    ++ ++D+    +  +fr++l+d+g+++ ++ + +     +vE+  +t 
  CCE28432.1 108 TNILHRRVCQDFAM--WDKTTWDRVHKEVRTKFRNTLRDHGVHPPHCDKVSDSLASLVEQGYQTT 170
                 33455555566665..89999**99988889*****************99999999999888875 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.28
         rve  60 arfggvepervlsDngseytska 82 
                 ++fgg+  + v++D++s+ t +a
  CCE28432.1 217 QQFGGS-GDSVHTDKASSLT-RA 237
                 578888.8*********998.43 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.9
         rve  30 vddfsrlilaealsde..mdastvlalle 56 
                 +d fsrl++ ++++++  ++ + ++++l 
  CCE28432.1 528 LDKFSRLTIQMVMDKNpdKSLKENFDILV 556
                 699**********9995555555555555 PP

  == domain 4  score: 20.7 bits;  conditional E-value: 7.9e-08
         rve   24 ayllvvvddfsrlilaealsde..mdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdnGkvErfhrtlkd 117 
                    +l+vvd+++ +  a +l+ +  ++++++ al e+ ++++ g  pe ++ D g+ ++s +fr  ++ + i+++  ++   q+ GkvEr h+ l++
  CCE28432.1 1032 RPVLHVVDTATSFQAARFLKPQgqKASDVWNALRECWMDSYLGP-PEWIVHDAGKNFASAEFRHSARLMSINIEEVPVEAHQSIGKVERYHGPLRR 1126
                  4578899************9988455555555556666666666.***********************************************9987 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   5.1e-09   2.3e-05      15      65 ..     948    1001 ..     940    1003 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 5.1e-09
  gag_pre-integrs   15 vslsknkssinlWHrRLGHpsfsrlkkLfk.......kgllpglkisksevCeaCqlg 65  
                       +++  ++++i++ HrR+GHps+ rl++L +       +g++ +l     + C++Cql 
       CCE28432.1  948 AAFHLSENEIRRLHRRFGHPSVARLTTLLQkageaadNGMIMKL----TRDCHHCQLN 1001
                       45556899*********************955444433344443....579*****95 PP

>> Collagen  Collagen triple helix repeat (20 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   8.8     0.014        61       4      41 ..     298     337 ..     269     341 .. 0.51
   2 !   19.0   7.3     2e-07   0.00089       9      54 ..     355     400 ..     350     405 .. 0.53

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.014
                 XXXXXXXXXXXX..XXX-----XXXXEEEE-TTSS----- CS
    Collagen   4 GepGepGppGpp..GkrGepGeaGekGekGpaGekGppGa 41 
                 G++ ++GppG +  G++  +G++  ++++G++G +G +Ga
  CCE28432.1 298 GQQQTAGPPGYThlGQQSFTGRQQTTAPPGHQGMPGYNGA 337
                 2222233333221133333333333333333333333332 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 2e-07
                 XXXXXXXXXX-----XXXXEEEE-TTSS-----------------B CS
    Collagen   9 pGppGppGkrGepGeaGekGekGpaGekGppGaaGkpGapGekGea 54 
                 +Gpp + G++  +G++G +G +Gp G++G  G +G+ G+ G +G+ 
  CCE28432.1 355 RGPPNNYGRPDLSGQQGYSGYDGPFGQQGYSGYDGPFGPWGYPGNT 400
                 4555555555555555555555555555555555555555555554 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.4e-05       0.2       2      57 ..     483     535 ..     482     582 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.4e-05
  Retrotrans_gag   2 lastslegaAkswlkslvarsidasesWkdlkkaflktflpserkdqleeelsslr 57 
                     l+s+ l g+A++w+ +  + ++    +++d  +a+++tf+  ++++   +++s+l+
      CCE28432.1 483 LFSIMLAGKALTWYMNTLDGTDL---TFDDAVAAVHRTFETRSNYRGHLDKFSRLT 535
                     799********************...9**************888888877787775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1904 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.04u 0.28s 00:00:01.32 Elapsed: 00:00:00.46
# Mc/sec: 12514.77
//
Query:       CCE28433.1  [L=172]
Description: probable signal peptidase (endopeptidase SP18) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-07   30.2   0.0    4.6e-07   29.7   0.0    1.3  1  Peptidase_S24  Peptidase S24-like


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   2.6e-11   4.6e-07       2      53 ..      45      99 ..      44     123 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.6e-11
                   XXSSTTCCTXXTTXEEEEECTS...---TTSEEEEEETTCE-EEEEEEEEETTEE CS
  Peptidase_S24  2 vpGdSMeptlldGdlilVdkfs...epkrGdivvfrlpgeeeayiKrviglpgdr 53
                   v ++SMep ++ Gdl+l    +   e   G++vv +++g+++ +++rv+++ g  
     CCE28433.1 45 VLSGSMEPAFQRGDLLLLWNRNlrqETSVGEVVVYNIKGKDIPIVHRVVRKFGVG 99
                   88***************98666788************************664443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1270.42
//
Query:       CCE28434.1  [L=92]
Description: uncharacterized protein CPUR_01909 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-07   29.5   8.4    0.00012   22.0   0.7    2.2  2  CsbD      CsbD-like


Domain annotation for each model (and alignments):
>> CsbD  CsbD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.7   6.4e-09   0.00012       3      38 ..      12      47 ..      11      61 .. 0.89
   2 !   11.9   1.8     9e-06      0.16       9      32 ..      63      86 ..      58      90 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.4e-09
        CsbD  3 ikgkaeqvkGkvKeaaGkaTgdekleaeGkadqlkG 38
                i+g ++ vkG +  ++G++Tg+  ++  G  d+++G
  CCE28434.1 12 IQGHVQYVKGVAEATIGDVTGSNPWKSSGEQDKAAG 47
                799********************************9 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 9e-06
        CsbD  9 qvkGkvKeaaGkaTgdekleaeGk 32
                q  Gk+ e aGk++g e ++ eG 
  CCE28434.1 63 QGYGKAEELAGKLAGCEGMKQEGA 86
                56799***************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      159  (0.00886831); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 678.23
//
Query:       CCE28435.1  [L=310]
Description: uncharacterized protein CPUR_01910 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.02   15.0   0.0      0.037   14.1   0.0    1.4  1  DUF1156   Protein of unknown function (DUF1156)


Domain annotation for each model (and alignments):
>> DUF1156  Protein of unknown function (DUF1156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     2e-06     0.037      28      70 ..      34      76 ..      24      78 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2e-06
     DUF1156 28 WWaRrPLaaaRAvifaqLvpdpsseleegktkeeaeaererlf 70
                W   + L+a+R ++++ Lv ++s+++++ +t+e++ + + +lf
  CCE28435.1 34 WIDQKALVASRGTVLGYLVAAASMTIHYKTTEEKEGTGLSNLF 76
                447899******************9999999999988888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2353.42
//
Query:       CCE28436.1  [L=462]
Description: related to mating protein SSF1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-51  172.9   0.0    1.1e-50  172.5   0.0    1.2  1  Brix            Brix domain
  ------ inclusion threshold ------
      0.071   12.4   4.6       0.13   11.6   4.6    1.4  1  PPL5            Prim-pol family 5
       0.13   10.9   0.3       0.27    9.9   0.3    1.5  1  Ndc1_Nup        Nucleoporin protein Ndc1-Nup
        0.2   11.5  10.1       0.34   10.8  10.1    1.4  1  CNDH2_C         Condensin II complex subunit CAP-H2 or CNDH2,
        1.2    9.1   5.3        2.4    8.0   5.3    1.4  1  CSRNP_N         Cysteine/serine-rich nuclear protein N-termin
        1.3    7.9   4.0        1.7    7.5   4.0    1.2  1  PA26            PA26 p53-induced protein (sestrin)
        1.4    8.2  10.6        2.5    7.4  10.6    1.4  1  Rtf2            Rtf2 RING-finger
        4.4    8.3  10.8        1.3    9.9   6.0    2.4  3  TT_ORF2         TT viral ORF2
          6    7.2  13.8         13    6.1  13.8    1.5  1  Vfa1            AAA-ATPase Vps4-associated protein 1


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.5   0.0   5.5e-54   1.1e-50       2     193 .]      41     339 ..      40     339 .. 0.92

  Alignments for each domain:
  == domain 1  score: 172.5 bits;  conditional E-value: 5.5e-54
                 TT--HHHHHHHHHHHHHCTTSEEEEEE.ECT-TTTHHHHHHH...-HHHHHHHH..HCTCSEEEEEE..SSTTEEEEEEEEECECTGGGSTTTS..... CS
        Brix   2 rktssrlrqllkdlrslmkphtasflk.rnsnklkdlvelag...vthlellse..kndcslfvfelskkrPngptlefkvenyslmkdlkkak..... 89 
                 +++ss ++ql++d+r++m+p tas+lk r+ nklkd+v ++g   vthl+l+s+  +++++l+++ +    P+gpt++f+ve+ysl+kd++k +     
  CCE28436.1  41 EVGSS-ISQLATDVRKVMEPGTASRLKeRKGNKLKDYVVMCGplgVTHLMLFSRseSGNTNLRMALA----PRGPTMHFRVERYSLCKDVQKVQkhprg 134
                 56677.9********************8888***********************999999*******....********************9999**** PP

                 .TS-TT---EEEEES.HHH................HHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTT.T.ECEEEEEEEEEE......... CS
        Brix  90 .ktefgsrPllvfngkenf................kllksllqdlFrvpkislkspklsglrrvvlftaaenqet.d.ktisfRhYaikl......... 160
                  ++ef ++Pllv+n   nf                +l+++++q+lF  p+i++++++l+ +rrv+l++ +e++e+ +   ++fRhYai++         
  CCE28436.1 135 gGKEFLTPPLLVMN---NFttpgatakskvpkhleSLATTVFQSLF--PPINPQKTPLKTIRRVLLLNREESEEDdGtFIVNFRHYAITTksttvskpl 228
                 **************...88889999999999999************..********************5443333435699*******99889999999 PP

                 .............E..STTTTECT...................................................................T..EEEEE CS
        Brix 161 .............kksgkklpnleke.................................................................kkerveLe 181
                              ++ + ++pnl+k+                                                                 ++++v+L+
  CCE28436.1 229 krikaaekllatkSSRQGRMPNLGKLediadymiggatgdgymtdatsgsevetdaeievvdnaprrvlstkarlaaeqngdemdievenvERRAVKLV 327
                 99999998888876667788888888**********************************************************9999866599***** PP

                 EESEEEEEEEEE CS
        Brix 182 EiGPrfdLklrk 193
                 E+GPr++L+l+k
  CCE28436.1 328 ELGPRMRLRLTK 339
                 **********86 PP

>> PPL5  Prim-pol family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.6   6.3e-05      0.13     160     238 ..     347     424 ..     305     439 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.3e-05
        PPL5 160 dkvsyhvhar.sltyleerlaaeakgveeveeksskkkskekkkklkkktsrkkkkegkkekesekeeededeeddlsdl 238
                 +k+ +h ++  s    +e  ++ +k  +e +e+ +k++++++++k+++k++rk+k+ + ++ ++e+ + d+d+e d sd+
  CCE28436.1 347 GKIMWHEYVHkSQEEIKELEKRWEKRNQE-KEARKKEQKANVERKQAEKAARKTKS-SAEDGAEEEGDDDDDDEVDYSDM 424
                 67777755540333333333333333333.33333333333444434443444444.44444555555777777889998 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00014      0.27     330     388 ..     348     400 ..     345     432 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00014
    Ndc1_Nup 330 s.tWsqilkeClklikeltqrinergq.papkaaps...kapknkasapvkelprlsksplkkk 388
                   +W++ + ++ ++ikel++r ++r q +++ ++++               e+++  k+  k+k
  CCE28436.1 348 KiMWHEYVHKSQEEIKELEKRWEKRNQeKEARKKEQkanV-----------ERKQAEKAARKTK 400
                 559************************4222222212321...........2222222222221 PP

>> CNDH2_C  Condensin II complex subunit CAP-H2 or CNDH2, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  10.1   0.00017      0.34      68     155 ..     359     448 ..     303     460 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
     CNDH2_C  68 gpafadeleylyqkeakerskarrklar....eeklkqalleeeeaeeeeevdeqeddddneaedgvdddddfgieleeeeddlkeseeeee 155
                   ++++ le+ + k  +e++++++++ +    +++ ++a+ +++++ e+  ++e +dddd e + +  d++df++e    + ++k++e +ee
  CCE28436.1 359 QEEIKE-LEKRWEKRNQEKEARKKEQ-KanveRKQAEKAARKTKSSAEDGAEEEGDDDDDDEVDYSDMDFEDFDSEGLAGDAEFKANEAMEE 448
                 245556.6666555555554444433.33554333333333333333333333333444444444444445666665333444444444443 PP

>> CSRNP_N  Cysteine/serine-rich nuclear protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.3    0.0012       2.4      38     107 ..     355     425 ..     343     433 .. 0.39

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0012
     CSRNP_N  38 khsslkkftlaehaieqkrlrreklrerlkeeklealklk.lsssdlleeeeeealevddisdedld.seae 107
                  h+s++++   e + e++++++e  +++ +++++e ++ +    + +++ e+ ++ e dd +d+++d s+++
  CCE28436.1 355 VHKSQEEIKELEKRWEKRNQEKEARKKE-QKANVERKQAEkAARKTKSSAEDGAEEEGDDDDDDEVDySDMD 425
                 3444444333333333333332222222.2222222222212233333333444444555555555533333 PP

>> PA26  PA26 p53-induced protein (sestrin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.0   0.00085       1.7     211     303 ..     353     445 ..     278     454 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00085
        PA26 211 kaaaeaeaevealmermkklqeeedeeeeaseeelserfekeeseslllaaadaeeaavasdlsryvedpefgyqdFarrgeeeiptfrvqdy 303
                 + ++++++e+++l +r +k ++e++ +++ ++++ +++  ++ ++++++ a+d  e++ + d    v+  ++ ++dF+++g      f++++ 
  CCE28436.1 353 EYVHKSQEEIKELEKRWEKRNQEKEARKKEQKANVERKQAEKAARKTKSSAEDGAEEEGDDDDDDEVDYSDMDFEDFDSEGLAGDAEFKANEA 445
                 45667788889999998888888887664444444443344444455555556777777788899999999*******999887778887765 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  10.6    0.0013       2.5     169     224 ..     356     408 ..     351     457 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0013
        Rtf2 169 nptkeelellkarleeekakkkkkkkakkkkkakakgskaeaeaaskssseasess 224
                   ++ee ++l++r+e+++++k+++kk++k  ++ +++++++a+ ++kss+e   ++
  CCE28436.1 356 HKSQEEIKELEKRWEKRNQEKEARKKEQK--ANVERKQAEKAARKTKSSAED-GAE 408
                 56899***********9999888776443..333333333333333322222.111 PP

>> TT_ORF2  TT viral ORF2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.3   2.6e+03      33      59 ..     162     188 ..     159     205 .. 0.65
   2 ?   -2.9   0.0       6.1   1.2e+04      88     105 ..     266     283 ..     224     291 .. 0.62
   3 ?    9.9   6.0   0.00066       1.3      48     115 ..     368     435 ..     345     442 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.3
     TT_ORF2  33 lkHlidlatqlsleepqgkrpkrklil 59 
                  kHl++lat +     ++ +p++++  
  CCE28436.1 162 PKHLESLATTVFQSLFPPINPQKTPLK 188
                 59******9987776555555555444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.1
     TT_ORF2  88 tgpseegdgttgdaeded 105
                 tg    +d+t g++++ d
  CCE28436.1 266 TGDGYMTDATSGSEVETD 283
                 222334555556555544 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00066
     TT_ORF2  48 pqgkrpkrklilrqspalpaakeekkklakwlettgedaetgpseegdgttgdaededldegdlDeLf 115
                    kr + k + +++++ + + ++ +k+a   +++ ed+++++ +++d+++ d  d d+++ d + L+
  CCE28436.1 368 RWEKRNQEKEARKKEQKANVERKQAEKAARKTKSSAEDGAEEEGDDDDDDEVDYSDMDFEDFDSEGLA 435
                 45567777777778888888887777777777788888888777777777777777777766666664 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  13.8    0.0063        13      67     119 ..     357     413 ..     348     450 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0063
        Vfa1  67 eleeeiekvkkeyeekqkkkkekekkkkekd......kkdkdkkkekekdkkkekekee 119
                 +++eei++++k++e+++++k+ ++k++ +++      +k   k+k++ +d ++e+  ++
  CCE28436.1 357 KSQEEIKELEKRWEKRNQEKEARKKEQ-KANverkqaEKAARKTKSSAEDGAEEEG-DD 413
                 578889999999988877777555544.2222211111122222222222211111.22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2325  (0.129678); expected 358.6 (0.02)
Passed bias filter:                      940  (0.052429); expected 358.6 (0.02)
Passed Vit filter:                       180  (0.0100396); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.42
# Mc/sec: 3323.24
//
Query:       CCE28437.1  [L=492]
Description: probable DEAD box protein (putative RNA helicase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-45  154.8   0.0    2.8e-45  154.2   0.0    1.3  1  DEAD           DEAD/DEAH box helicase
    1.1e-30  106.2   0.0    2.8e-30  104.9   0.0    1.7  1  Helicase_C     Helicase conserved C-terminal domain
    9.3e-06   25.8   0.0    2.1e-05   24.6   0.0    1.6  1  ResIII         Type III restriction enzyme, res subunit
    0.00083   18.6   0.2     0.0032   16.7   0.0    1.8  2  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   0.0   6.2e-49   2.8e-45       1     175 [.      90     256 ..      90     257 .. 0.96

  Alignments for each domain:
  == domain 1  score: 154.2 bits;  conditional E-value: 6.2e-49
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 t+iQ+++ip +l+++d+++ aeTGsGKT+af++p+lq++++  + +    l+++PtreLa q+ + ++ +++ i+lr+ +i+gg +   q  +l ++++
  CCE28437.1  90 TPIQEKSIPVALTDRDIIGLAETGSGKTAAFALPILQALLD--KPQPLFGLVLAPTRELAAQIGQAFEALGSLISLRCAVIVGGLDMVPQAVALGKKPH 186
                 89*************************************97..8888899********************************************999** PP

                 EEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 i+v+tpgrl+d+l +t+ ++l+ +++lV+DEadrlld++f++ i+++l+ +       + +r++ ++SATl++ v+ 
  CCE28437.1 187 IIVATPGRLVDHLeKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFI-------PRERRTFLFSATLSSRVES 256
                 *************67888*********************************.......56789*********88876 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.0   6.2e-34   2.8e-30       2     111 .]     293     401 ..     292     401 .. 0.94

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 6.2e-34
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                 k  +l++l  +e  g+ ++if++t+ + +++ +ll++ g+ +++lhg+l+q+ r+ +l++f++g++d+L+atdva+rG+dipkv++V nfdlp++ ++y
  CCE28437.1 293 KDTYLIYLA-NEFAGKSTIIFTRTVWETQRTAVLLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILVATDVAARGLDIPKVDFVLNFDLPQDSKTY 390
                 566777775.8899************998889998999************************************************************* PP

                 HHHHTTSSSTT CS
  Helicase_C 101 iqriGRtgRag 111
                 i+r+GRt+Rag
  CCE28437.1 391 IHRVGRTARAG 401
                 *********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.8e-09   2.1e-05      31     169 ..     110     250 ..      82     252 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 4.8e-09
                 ESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.........-SEEEEEHHHHHHTH........ CS
      ResIII  31 maTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseaykeigkkvsgdkkka..kekdstnkkilvttiqsldadseeeeeese 126
                 ++TG+GKT   a  i + l  +++    l+l+p+++l  q  ++f+ + s    + + ++ g  ++        ++ +i+v+t  +l  ++    e+++
  CCE28437.1 110 AETGSGKTAAFALPILQALLDKPQPlFGLVLAPTRELAAQIGQAFEALGSLISLR-CAVIVGGLDMVpqAVALGKKPHIIVATPGRLVDHL----EKTK 203
                 67********9766666666656663669*******************9998775.4444444444435555678889*************....8888 PP

                 HHHTTT-SEEEEETGGGTTS.T...TTHHHHHT-.--SEEEEEESS- CS
      ResIII 127 ellrdrfdviiiDEaHrlgakk...swreilekf.keavllglTATp 169
                  ++  + +++++DEa rl +++   ++ ++l+ + +e   + ++AT+
  CCE28437.1 204 GFSLRTLKYLVMDEADRLLDMDfgpAIDKLLKFIpRERRTFLFSATL 250
                 89999999************964447777788885558889999997 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     7e-07    0.0032      26     153 ..     274     402 ..     269     414 .. 0.80
   2 ?   -0.9   0.1      0.17   7.6e+02     135     154 ..     442     461 ..     439     469 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7e-07
  ERCC3_RAD25_C  26 eylkakskkkkllyvmnpnkfracefLikyhekrgDkiivfsDnvfaLkeyakklkkp.y....iyGetseaerlkilqkfkknpkvntiflskvg 116
                    +y + ++  +++l++  p+k + + +L +  e  g   i+f+  v+  ++ a  l+   +    ++G+ s++ rl  l+kf++  + + ++   v+
     CCE28437.1 274 KYQTVSTLLQHMLFIPQPRKDTYLIYLAN--EFAGKSTIIFTRTVWETQRTAVLLRTLgFgaipLHGQLSQSARLGALNKFRSG-TRDILVATDVA 366
                    67777788888899999988765555543..4567779**************9987642233338****************987.557888899** PP

  ERCC3_RAD25_C 117 DtsiDlPeanvliqisshfgsrrqeaqrlGriLrakk 153
                       +D+P+   ++  +  + s+     r+Gr  ra k
     CCE28437.1 367 ARGLDIPKVDFVLNFDLPQDSKT-YIHRVGRTARAGK 402
                    *************9999999875.5789999999865 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.17
  ERCC3_RAD25_C 135 fgsrrqeaqrlGriLrakkk 154
                    f sr  eaqr  r+   k +
     CCE28437.1 442 FQSRVEEAQRHARVEMKKLG 461
                    789*********99766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.57
# Mc/sec: 2621.69
//
Query:       CCE28438.1  [L=2279]
Description: related to transcriptional corepressor HIR3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.049   13.5   0.1      0.049   13.5   0.1    2.8  2  C_Hendra  C protein from hendra and measles viruses
      0.078   13.5   2.9         13    6.4   0.0    3.9  3  TPR_19    Tetratricopeptide repeat
          5    6.9   6.5         27    4.5   0.0    3.8  4  TPR_11    TPR repeat
        5.3    8.1  11.5        9.5    7.3   0.1    5.8  7  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> C_Hendra  C protein from hendra and measles viruses
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.1e-05     0.049      72     121 ..     739     788 ..     712     801 .. 0.83
   2 ?   -2.7   3.1       1.1   4.9e+03      51     100 ..    1209    1257 ..    1198    1268 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
    C_Hendra  72 qlleemekkdkskqileqgshreliynytqllktllsmleegeiptvdll 121
                   ++  e+ +++++ +++   +e++y++ ++l+t+++ l+  ++p+ d l
  CCE28438.1 739 LHIDIYERITNPSSAVDYATRVETKYRLDRWLRTMSTYLQVQNVPQNDIL 788
                 456777888999***********************************965 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.1
    C_Hendra   51 ikeesrvkreqlkaeareilpqlleemekkdkskqileqgshreliynyt 100 
                  ++  +++++  +++ ++ +l+ +l+  ++  ++++ +  +s+ ++i n+ 
  CCE28438.1 1209 MQLVEKIMILANRMTMKDLLKSELKTTIEHMQQTIGQT-KSTAQMIHNLR 1257
                  55556666667777777777777766555555444433.33344444443 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.0      0.11   4.9e+02       6      35 ..      79     108 ..      79     111 .. 0.80
   2 ?    2.2   0.0     0.058   2.6e+02      16      33 ..     214     231 ..     203     233 .. 0.78
   3 ?    6.4   0.0    0.0028        13      10      41 ..    1468    1499 ..    1466    1501 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.11
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeal 35 
                 + +eAl+++++al+  ++ ++ r + A a+
  CCE28438.1  79 QVDEALKRFQAALKLHAQGQNSRHAAASAY 108
                 5799*********99999777777777666 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.058
      TPR_19  16 qalqedpknaearllLAe 33 
                 +al++dp ++e++  +A+
  CCE28438.1 214 AALDQDPSDPELWRKMAR 231
                 589999999999998887 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0028
      TPR_19   10 AlalleqalqedpknaearllLAeallalgql 41  
                  A++l++ a++ dp+n+   + L ++++++ q+
  CCE28438.1 1468 AARLFRMAMKRDPHNWKNPYMLGKCYWKMYQT 1499
                  899************************98665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2     0.019        84       9      25 ..      79      95 ..      79     110 .. 0.81
   2 ?   -1.0   0.8      0.34   1.5e+03       9      22 ..     118     131 ..     118     133 .. 0.89
   3 ?    4.5   0.0    0.0061        27      15      34 ..     210     229 ..     207     231 .. 0.87
   4 ?   -2.4   0.0      0.89     4e+03      29      41 ..    1543    1555 ..    1543    1555 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.019
      TPR_11  9 kyeeAieaYkkAlkldP 25
                + +eA++++++Alkl  
  CCE28438.1 79 QVDEALKRFQAALKLHA 95
                679***********965 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.34
      TPR_11   9 kyeeAieaYkkAlk 22 
                 +y eA ++Y++A +
  CCE28438.1 118 QYREARTDYERAER 131
                 799********975 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0061
      TPR_11  15 eaYkkAlkldPdnaeayynL 34 
                  ++ +Al+ dP+++e++ ++
  CCE28438.1 210 DNWTAALDQDPSDPELWRKM 229
                 57889***********9887 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.89
      TPR_11   29 eayynLGlayykq 41  
                  e +y+L+ +++k+
  CCE28438.1 1543 EPHYKLASILHKL 1555
                  57*******9986 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.35   1.6e+03      16      32 ..      79      95 ..      77     113 .. 0.80
   2 ?   -2.6   0.1       3.3   1.5e+04      16      28 ..     118     130 ..      98     138 .. 0.61
   3 ?    7.3   0.1    0.0021       9.5      25      43 ..     213     231 ..     195     232 .. 0.84
   4 ?   -1.5   0.0       1.5   6.6e+03      10      32 ..     370     392 ..     362     396 .. 0.77
   5 ?   -3.7   0.0         4   1.8e+04      12      22 ..     973     983 ..     970     984 .. 0.70
   6 ?    1.9   0.2      0.12   5.4e+02      20      44 .]    1331    1355 ..    1324    1355 .. 0.82
   7 ?   -0.7   0.0       0.8   3.6e+03      20      42 ..    1468    1490 ..    1464    1492 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.35
      TPR_14 16 dpdeAiallrralalaP 32
                + deA++ +++al+l+ 
  CCE28438.1 79 QVDEALKRFQAALKLHA 95
                67999999999999764 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.3
      TPR_14  16 dpdeAiallrral 28 
                 +++eA++ ++ra 
  CCE28438.1 118 QYREARTDYERAE 130
                 4666666666664 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0021
      TPR_14  25 rralalaPddaeawlllaq 43 
                  +al+++P+d+e+w+ +a+
  CCE28438.1 213 TAALDQDPSDPELWRKMAR 231
                 5899*************98 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.5
      TPR_14  10 allalGdpdeAiallrralalaP 32 
                 ++  l+d+++A++++r +l +a 
  CCE28438.1 370 LMKCLQDTKGALQACRSILNAAE 392
                 5567899********99987665 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 4
      TPR_14  12 lalGdpdeAia 22 
                  +lGd  eAi+
  CCE28438.1 973 SRLGDAYEAIK 983
                 47888888887 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.12
      TPR_14   20 AiallrralalaPddaeawlllaql 44  
                   ++ lr  l+   d ++aw++la++
  CCE28438.1 1331 GATFLRLQLQFTADRWDAWFRLAEC 1355
                  5667888999999**********85 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 0.8
      TPR_14   20 AiallrralalaPddaeawllla 42  
                  A++l+r a +++P ++   ++l+
  CCE28438.1 1468 AARLFRMAMKRDPHNWKNPYMLG 1490
                  99***********9997666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1438  (0.0802053); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                       187  (0.01043); expected 17.9 (0.001)
Passed Fwd filter:                        92  (0.00513135); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 2.68u 0.38s 00:00:03.06 Elapsed: 00:00:00.70
# Mc/sec: 9864.80
//
Query:       CCE28439.1  [L=1611]
Description: related to BUD7 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     2e-149  497.9   0.0   2.9e-149  497.4   0.0    1.2  1  ChAPs       ChAPs (Chs5p-Arf1p-binding proteins)
    6.2e-13   48.3  18.8    1.8e-07   30.9   5.2    2.5  2  zf_CCCH_4   Zinc finger domain
    3.8e-11   42.6  11.2    1.3e-05   25.0   2.2    2.8  2  zf-CCCH     Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    9.5e-11   42.4   4.1    7.9e-05   23.3   0.0    3.3  2  Torus       Torus domain
    2.3e-09   36.8  20.1    3.2e-07   30.0   1.0    3.5  3  zf-CCCH_4   CCCH-type zinc finger
    3.7e-05   23.5   2.1      0.011   15.8   1.0    3.5  3  TPR_2       Tetratricopeptide repeat
    6.9e-05   23.0  20.4      9e-05   22.6   2.8    3.6  3  IBR         IBR domain, a half RING-finger domain
     0.0002   21.4   0.1      0.026   14.7   0.0    2.8  2  TPR_9       Tetratricopeptide repeat
    0.00023   21.0   1.1       0.41   10.8   0.0    3.2  2  TPR_7       Tetratricopeptide repeat
    0.00058   19.6   0.2       0.23   11.3   0.2    2.6  2  TPR_1       Tetratricopeptide repeat
    0.00066   19.7   0.0       0.14   12.4   0.0    3.5  3  TPR_8       Tetratricopeptide repeat
    0.00084   20.0   8.3       0.12   13.3   0.2    5.3  5  TPR_14      Tetratricopeptide repeat
     0.0031   17.3   5.6     0.0031   17.3   5.6    2.7  1  zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.018   15.5   2.0      0.018   15.5   2.0    3.4  3  zf-CCCH_2   RNA-binding, Nab2-type zinc finger
      0.021   15.4   2.3         77    4.3   0.0    4.8  4  TPR_6       Tetratricopeptide repeat
      0.038   14.2  10.3       0.23   11.7   0.2    3.2  2  zf-CCCH_3   Zinc-finger containing family


Domain annotation for each model (and alignments):
>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  497.4   0.0  2.6e-152  2.9e-149       2     395 .]     966    1352 ..     965    1352 .. 0.99

  Alignments for each domain:
  == domain 1  score: 497.4 bits;  conditional E-value: 2.6e-152
                  XXXEEEEEEEXXXXSXHHHHHHHHHHHHCCSSSSXXXTTSXXXXXECCEEEEEEEETTTTEEEEEEEESSXXEEEEEEETTSXBEEXHHHHHHHHHH CS
       ChAPs    2 keiGtyfyvtGvdtSssasiavylkqlteslseksqlwFgkkktfkvskisyctyNaFskvDvrvevkiPGsvesyvvdergekeeatdelWaEtfl 98  
                  k++G y++vtGvd+Sssas+a+y+++lt++         g+++t k+ +++yc+yNaFs++D+rv+v iPG+vesy+vdergek++a+delW+Et+l
  CCE28439.1  966 KQTGIYHHVTGVDASSSASLAAYINTLTYKD-------NGSNATSKIVQGVYCCYNAFSRLDMRVHVSIPGTVESYCVDERGEKRKASDELWLETYL 1055
                  789**************************99.......799******************************************************** PP

                  HHHHHHHHHHHTTTTTTS----TTEEE--GGG--SSS-HHHHHHHTHHHHTTCGGGG---TT-SS--SSSSHHHHHHHHHHHHHT-HHHHHHHHHHH CS
       ChAPs   99 sgvlRsllladdnadddevqklvetrklnPltsgelekkaelFlkafeklfekgvklgadsevqvptlvnNyLvetllklvrltkrydralellekL 195 
                  ++vlR++ +add ++ ++++k+ ++r++nP+t++e+e+k   Fl+a+e+lf++g++lg+ds vqvpt+v+N+L+ +llk++++t r+ ++++l+ekL
  CCE28439.1 1056 CSVLRAYSYADD-GSGETIRKILGVRRFNPITNTETEQK---FLNAAEHLFFRGWQLGSDSIVQVPTNVSNHLTTGLLKYLETTGRHASGINLFEKL 1148
                  ************.999***********************...******************************************************* PP

                  HTT-GGGHHHHHHHHHHTT-HHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHSS--...........HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHT CS
       ChAPs  196 keeepevvillarvllladeEvdavkllneeleeeekdaelLllqaefllskkke...........elAlevakravksaPsefktWalLvkvYikl 281 
                  +++++ev++ll++v+++ ++Ev+++k l+++l+e+++d  +L++qaefll+k+++           ++Al +a+r++ +aPsef tWa+L++vY+++
  CCE28439.1 1149 RTQSVEVSSLLSKVMFMGNQEVSGIKNLYQSLQETPMDHVMLDTQAEFLLNKAQKaetaeqrderlKMALGCADRSTIAAPSEFGTWARLAQVYVAM 1245
                  ****************************************************999999*************************************** PP

                  T-HHHHHHHHHT----SS--------SS-------EB---TTSS--TT--------SS---S---HHHHT-TTTT--HHHHHHHHHHHHHHHHH-HH CS
       ChAPs  282 edienALltLNscPmftykekdvlrriapakseddlhlPlpldvvldevselnssevteeqkevdpsLlrlkaanlkstfakaYelLteivkkiGWe 378 
                  ed+enAL+tLNscPmft+++kd+  ++ p +    + lP+ +d++lde++++ +s+    +++vd sLl+l+aa +++tf++aY+lLte+++kiGW+
  CCE28439.1 1246 EDWENALTTLNSCPMFTHQDKDTPIMPDPRD----VLLPILADTRLDEIDSEPESR---FSEQVDASLLNLRAAGYRGTFKQAYRLLTEMTAKIGWD 1335
                  ******************************9....******************999...899*********************************** PP

                  HHHHHHHHHB-XXXXXX CS
       ChAPs  379 eLLkvRskvFvmeeEYr 395 
                  +LLk+Rs+vFvme+EYr
  CCE28439.1 1336 QLLKIRSNVFVMEDEYR 1352
                  ****************8 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   5.6   5.5e-08   6.2e-05       1      19 []      40      58 ..      40      58 .. 1.00
   2 !   30.9   5.2   1.6e-10   1.8e-07       1      19 []      90     108 ..      90     108 .. 1.00

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 5.5e-08
   zf_CCCH_4  1 CkfflqGtCkkGdkCrFaH 19
                C+ff++G+C++G+ C F+H
  CCE28439.1 40 CQFFARGRCRNGTTCSFSH 58
                ******************* PP

  == domain 2  score: 30.9 bits;  conditional E-value: 1.6e-10
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 C+f++qG+C+kG+kC+FaH
  CCE28439.1  90 CRFYQQGSCTKGEKCQFAH 108
                 ******************* PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   1.8   1.2e-07   0.00013       5      26 ..      39      59 ..      36      60 .. 0.92
   2 !   25.0   2.2   1.1e-08   1.3e-05       5      26 ..      89     109 ..      86     110 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.2e-07
                CBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH  5 lCrffmrtGyCkyGdrCkFaHg 26
                +C+ff+r G C+ G +C+F+H 
  CCE28439.1 39 ICQFFAR-GRCRNGTTCSFSHA 59
                8******.*************6 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 1.1e-08
                 CBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   5 lCrffmrtGyCkyGdrCkFaHg 26 
                 +Crf+++ G+C  G++C+FaH+
  CCE28439.1  89 PCRFYQQ-GSCTKGEKCQFAHD 109
                 8******.*************6 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     7e-08   7.9e-05      62      93 ..      29      60 ..       5      71 .. 0.86
   2 !   18.8   0.2   1.8e-06     0.002      70      98 ..      87     115 ..      79     124 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 7e-08
                -HHHHSTT--B-HHHHHT--SSGGG-SSB-S- CS
       Torus 62 tkadkekesyfClfFarGlCakGkkCeylHrl 93
                t a++ ++s++C fFarG C +G+ C++ H  
  CCE28439.1 29 TPASDWRSSTICQFFARGRCRNGTTCSFSHAQ 60
                667778899*********************75 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.8e-06
                 --B-HHHHHT--SSGGG-SSB-S---SS- CS
       Torus  70 syfClfFarGlCakGkkCeylHrlPteed 98 
                 ++ C f+ +G C+kG+kC++ H++ +++ 
  CCE28439.1  87 HIPCRFYQQGSCTKGEKCQFAHDIGHTTT 115
                 567********************987665 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   2.1   1.2e-06    0.0013       2      21 ..      39      58 ..      38      59 .. 0.95
   2 !   30.0   1.0   2.9e-10   3.2e-07       2      22 .]      89     109 ..      88     109 .. 0.97
   3 ?   -1.7   2.6       2.5   2.8e+03       3      11 ..     667     675 ..     665     676 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.2e-06
   zf-CCCH_4  2 lCpyfakGsCrfGdnCrFsH 21
                +C +fa+G+Cr G  C FsH
  CCE28439.1 39 ICQFFARGRCRNGTTCSFSH 58
                7******************* PP

  == domain 2  score: 30.0 bits;  conditional E-value: 2.9e-10
   zf-CCCH_4   2 lCpyfakGsCrfGdnCrFsHd 22 
                 +C+++++GsC+ G++C F+Hd
  CCE28439.1  89 PCRFYQQGSCTKGEKCQFAHD 109
                 9*******************9 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.5
   zf-CCCH_4   3 CpyfakGsC 11 
                 C+++++ +C
  CCE28439.1 667 CKHVYCAGC 675
                 ********9 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       6.3   7.1e+03      14      26 ..     480     492 ..     479     494 .. 0.87
   2 ?    4.5   0.0     0.041        46       4      22 ..    1235    1253 ..    1232    1257 .. 0.90
   3 !   15.8   1.0   9.8e-06     0.011       1      30 [.    1486    1515 ..    1486    1517 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6.3
       TPR_2  14 lgdyeeAleafek 26 
                 +gd ++A+ a+e+
  CCE28439.1 480 AGDVAKAKTALEQ 492
                 5999******998 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.041
       TPR_2    4 lynlGlayyklgdyeeAle 22  
                  + +l+++y ++ d+e Al 
  CCE28439.1 1235 WARLAQVYVAMEDWENALT 1253
                  99***************96 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 9.8e-06
       TPR_2    1 aealynlGlayyklgdyeeAleafekAlel 30  
                  ae +  lG ++++l++++eA+ea++++l+l
  CCE28439.1 1486 AEEWEILGALAERLQHFDEAVEAYRACLSL 1515
                  78999***********************98 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   3.6      0.51   5.7e+02      19      50 ..     650     681 ..     635     689 .. 0.65
   2 !   22.6   2.8   8.1e-08     9e-05      14      62 .]     732     820 ..     719     820 .. 0.84
   3 !    8.4   0.4    0.0022       2.5      18      39 ..     845     864 ..     833     871 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.51
         IBR  19 kwCprpdCeaiiekseg..cksvtCskCgfefCf 50 
                   C    C + +e+  +  ck+v C+ C ++ C+
  CCE28439.1 650 SACA--ICWTKAENPVHtaCKHVYCAGCFEDLCL 681
                 4444..4554444444466778888888888875 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 8.1e-08
         IBR  14 sdpnlkwCprpdCeaiieksegcks.........................................vtCskCgfefCfnCkkewHeglsC 62 
                   ++lk+Cp+pdC ++++ s+ ++                                           +C++C   +C+ C+ + He  +C
  CCE28439.1 732 HAHELKNCPTPDCTQLYRASKAKAPplvthqqdganagardedhenrdddeddnengaddapeppfFKCPSCLVTTCTACHIP-HEAQTC 820
                 35679************888884445566678899999999999999**********************************88.888888 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0022
         IBR  18 lkwCprpdCeaiieksegcksv 39 
                 +k+Cp  dC+ +iek +gc+++
  CCE28439.1 845 IKNCP--DCGIMIEKASGCNHM 864
                 899**..***********9995 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.3e-05     0.026       6      55 ..    1209    1258 ..    1204    1271 .. 0.89
   2 ?    3.5   0.0     0.071        79      28      58 ..    1485    1515 ..    1482    1541 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.3e-05
       TPR_9    6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeay 55  
                  +r e+   al +++r  + aP + + +   +++++ +++++ Al  L+ +
  CCE28439.1 1209 QRDERLKMALGCADRSTIAAPSEFGTWARLAQVYVAMEDWENALTTLNSC 1258
                  67889999************************************999865 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.071
       TPR_9   28 dpeerrdRGlllaqlGclsaAladLeaylal 58  
                  ++ee+   G l ++l ++ +A+++  a+l+l
  CCE28439.1 1485 SAEEWEILGALAERLQHFDEAVEAYRACLSL 1515
                  78999999*******************9965 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0042       4.7       1      21 [.    1234    1254 ..    1234    1256 .. 0.90
   2 !   10.8   0.0   0.00037      0.41       5      32 ..    1492    1519 ..    1489    1525 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0042
       TPR_7    1 aLlnLarlysrlGdyeeAiel 21  
                  ++ +La++y+++ d+e+A++ 
  CCE28439.1 1234 TWARLAQVYVAMEDWENALTT 1254
                  6789**************985 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00037
       TPR_7    5 LarlysrlGdyeeAielyeqsLaltkdp 32  
                  L+ l +rl++++eA+e y+++L l+ +p
  CCE28439.1 1492 LGALAERLQHFDEAVEAYRACLSLRFSP 1519
                  89999***************99988555 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.015        17       3      21 ..    1234    1252 ..    1233    1257 .. 0.92
   2 !   11.3   0.2   0.00021      0.23       2      30 ..    1487    1515 ..    1486    1517 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.015
                  HHHHHHHHHHHTT-HHHHH CS
       TPR_1    3 alynlGnayfklgkydeAl 21  
                  ++ +l+++y  +++++ Al
  CCE28439.1 1234 TWARLAQVYVAMEDWENAL 1252
                  699***************9 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00021
                  HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1    2 kalynlGnayfklgkydeAleyyekALel 30  
                  + +  lG++  +l+ +deA+e+y+ +L+l
  CCE28439.1 1487 EEWEILGALAERLQHFDEAVEAYRACLSL 1515
                  567779*********************98 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       6.2     7e+03      15      28 ..     481     494 ..     480     495 .. 0.87
   2 ?    2.9   0.0      0.14   1.6e+02       3      26 ..    1234    1257 ..    1232    1258 .. 0.88
   3 !   12.4   0.0   0.00013      0.14       6      31 ..    1491    1516 ..    1489    1519 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6.2
                 T-HHHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyekal 28 
                 gd  +Ak ++e+ +
  CCE28439.1 481 GDVAKAKTALEQIV 494
                 8999*******965 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.14
                  HHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8    3 ayynlgsiylklgdyeeAkeyyek 26  
                   + +l+++y  ++d e+A  +++ 
  CCE28439.1 1234 TWARLAQVYVAMEDWENALTTLNS 1257
                  699*************99988875 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00013
                  HHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8    6 nlgsiylklgdyeeAkeyyekaleld 31  
                   lg + + l+ ++eA+e+y+ +l+l+
  CCE28439.1 1491 ILGALAERLQHFDEAVEAYRACLSLR 1516
                  5888999*****************97 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2         4   4.4e+03      12      26 ..     512     526 ..     510     544 .. 0.74
   2 ?    0.5   0.0       1.3   1.5e+03       7      27 ..    1128    1148 ..    1124    1156 .. 0.87
   3 ?    5.7   0.1     0.029        32       3      25 ..    1234    1256 ..    1202    1259 .. 0.89
   4 ?   -2.1   0.0       9.1     1e+04      14      30 ..    1315    1331 ..    1309    1340 .. 0.76
   5 !   13.3   0.2    0.0001      0.12       2      36 ..    1487    1523 ..    1486    1529 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 4
      TPR_14  12 lalGdpdeAiallrr 26 
                 +a Gd  +Ai+ l+r
  CCE28439.1 512 AAHGDAHQAIKQLER 526
                 678999*******98 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.3
      TPR_14    7 laeallalGdpdeAiallrra 27  
                  l+++l++ G+++  i+l++++
  CCE28439.1 1128 LLKYLETTGRHASGINLFEKL 1148
                  78899*************987 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.029
      TPR_14    3 allalaeallalGdpdeAiallr 25  
                   +++la+++ a +d++ A++ l+
  CCE28439.1 1234 TWARLAQVYVAMEDWENALTTLN 1256
                  69999999999999999998886 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 9.1
      TPR_14   14 lGdpdeAiallrralal 30  
                  +G +++A +ll ++ a+
  CCE28439.1 1315 RGTFKQAYRLLTEMTAK 1331
                  58899******999886 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 0.0001
      TPR_14    2 eallalaeallalGdpdeAiallrralal..aPddae 36  
                  e +  l+++ ++l+ +deA++++r++l+l   P++++
  CCE28439.1 1487 EEWEILGALAERLQHFDEAVEAYRACLSLrfSPKSLA 1523
                  6788899*******************99633577765 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   5.6   2.8e-06    0.0031       2      29 ..     652     678 ..     651     684 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.8e-06
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilr 29 
                 C+iC    ++p v t+C+Hv+C+ C+  
  CCE28439.1 652 CAICWTKAENP-VHTACKHVYCAGCFED 678
                 ***********.99***********975 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.5   0.00062      0.69       1      17 [.      39      58 ..      39      59 .. 0.95
   2 ?   15.5   2.0   1.6e-05     0.018       1      17 [.      89     108 ..      89     108 .. 0.99
   3 ?   -2.0   1.5       5.2   5.8e+03       7      14 ..     738     745 ..     737     746 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00062
   zf-CCCH_2  1 pCrffpn..C.tnpkCpFaH 17
                +C ff+   C  +  C+F+H
  CCE28439.1 39 ICQFFARgrCrNGTTCSFSH 58
                7******************* PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.6e-05
   zf-CCCH_2   1 pCrffpn..C.tnpkCpFaH 17 
                 pCrf+    C +++kC FaH
  CCE28439.1  89 PCRFYQQgsCtKGEKCQFAH 108
                 9******************* PP

  == domain 3  score: -2.0 bits;  conditional E-value: 5.2
   zf-CCCH_2   7 nCtnpkCp 14 
                 nC+ p+C+
  CCE28439.1 738 NCPTPDCT 745
                 9******6 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0       0.2   2.2e+02      13      28 ..     480     495 ..     472     495 .. 0.87
   2 ?   -2.2   0.0       7.9   8.9e+03      10      25 ..     511     526 ..     510     526 .. 0.80
   3 ?    4.3   0.0     0.068        77       5      25 ..    1237    1257 ..    1235    1258 .. 0.91
   4 ?    3.8   0.1     0.098   1.1e+02       8      27 ..    1494    1513 ..    1491    1516 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHHHH CS
       TPR_6  13 lgdtdkAlealerlik 28 
                 +gd +kA++ale++++
  CCE28439.1 480 AGDVAKAKTALEQIVD 495
                 58***********985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 7.9
                 HHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealer 25 
                 + + gd+ +A++ ler
  CCE28439.1 511 FAAHGDAHQAIKQLER 526
                 45668*******9987 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.068
                  HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6    5 klalsyrklgdtdkAlealer 25  
                  +la+ y ++ d+++Al++l++
  CCE28439.1 1237 RLAQVYVAMEDWENALTTLNS 1257
                  89******88********986 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.098
                  HHHHHHHHHHHHHHHHHHHH CS
       TPR_6    8 lsyrklgdtdkAlealerli 27  
                   + ++l+  d+A+ea++ ++
  CCE28439.1 1494 ALAERLQHFDEAVEAYRACL 1513
                  4445544**********987 PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0019       2.2      33      58 ..      36      62 ..      30      69 .. 0.74
   2 ?   11.7   0.2   0.00021      0.23       8      35 ..      90     117 ..      84     127 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0019
   zf-CCCH_3 33 setvctlWqegrclr.evckfrhmeid 58
                s t+c+++ +grc + ++c f h +++
  CCE28439.1 36 SSTICQFFARGRCRNgTTCSFSHAQNR 62
                567888888888877356888887765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00021
   zf-CCCH_3   8 cyffyystctkGdscpfrheeaalGset 35 
                 c f+    ctkG++c f h      ++t
  CCE28439.1  90 CRFYQQGSCTKGEKCQFAHDIGHTTTQT 117
                 99*****************866555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.93u 0.29s 00:00:01.22 Elapsed: 00:00:00.48
# Mc/sec: 10089.06
//
Query:       CCE28440.1  [L=402]
Description: uncharacterized protein CPUR_01915 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0013   19.2   0.3        1.3    9.6   0.0    2.7  2  TPR_19    Tetratricopeptide repeat
     0.0049   17.1   0.2      0.079   13.2   0.0    2.4  2  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
       0.21   11.8   1.7         31    5.0   0.0    3.4  3  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0017        10       1      49 [.     233     279 ..     233     285 .. 0.86
   2 !    9.6   0.0   0.00021       1.3       2      52 ..     298     348 ..     297     354 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0017
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLd 49 
                 l+++ d+  A+ +l+++   d  ++ +++  A + l  g++++A+++ +
  CCE28440.1 233 LIEMDDLSGAAYHLRSL--RDGADGKVAMSKALLWLRIGDVEKARECAA 279
                 7899************8..6677888888889999999*******9865 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00021
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 +a+g y++Ala  + + ++ ++++ +  + A +ll lg+  e + +L++l 
  CCE28440.1 298 MADGEYEAALAKWQDLKEDLAGDEMVGVNTAVCLLYLGRMPEGRGILETLV 348
                 799*********************************************986 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.3    0.0059        35      55      80 ..     271     296 ..     258     298 .. 0.82
   2 !   13.2   0.0   1.3e-05     0.079      28      81 ..     292     346 ..     288     347 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0059
                 -HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  55 slgcrylfAqcllkLkkyeeAiaaLe 80 
                  +++r ++Aqc+ +L k ++Ai aL 
  CCE28440.1 271 VEKARECAAQCSKDLIKTDKAILALC 296
                 46899*****************9986 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  28 llAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                  lAlc   +g+y+ A+   +++ +    ++ + + +A cll L+++ e++ +Le 
  CCE28440.1 292 ILALCDMADGEYEAALAKWQDLkEDLAGDEMVGVNTAVCLLYLGRMPEGRGILET 346
                 58********************99999999**********************985 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0052        31       7      26 ..     261     280 ..     256     283 .. 0.85
   2 ?    3.9   0.3     0.012        69       7      25 ..     293     311 ..     291     315 .. 0.89
   3 ?   -2.6   0.0       1.4   8.6e+03       8      17 ..     328     337 ..     326     344 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0052
       TPR_2   7 lGlayyklgdyeeAleafek 26 
                  +l++++ gd e+A+e+  +
  CCE28440.1 261 KALLWLRIGDVEKARECAAQ 280
                 5889999**********876 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.012
       TPR_2   7 lGlayyklgdyeeAleafe 25 
                 l+l+ ++ g+ye Al+ ++
  CCE28440.1 293 LALCDMADGEYEAALAKWQ 311
                 89999**********9987 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.4
       TPR_2   8 Glayyklgdy 17 
                 + ++++lg+ 
  CCE28440.1 328 AVCLLYLGRM 337
                 7899999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3159.67
//
Query:       CCE28441.1  [L=403]
Description: related to XPA binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-71  238.6   0.0    1.7e-70  237.6   0.0    1.5  2  ATP_bind_1       Conserved hypothetical ATP binding protein
    2.7e-05   24.0   0.0    5.4e-05   23.0   0.0    1.5  1  AAA_24           AAA domain
    3.5e-05   22.9   0.1       0.09   11.7   0.0    2.4  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
    0.00029   20.5   0.0     0.0019   17.8   0.0    2.1  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
    0.00033   20.3   0.0      0.034   13.7   0.0    2.7  2  GTP_EFTU         Elongation factor Tu GTP binding domain
     0.0007   19.9   0.0     0.0019   18.5   0.0    1.8  1  AAA_22           AAA domain
    0.00089   18.9   0.0      0.019   14.6   0.0    2.5  2  SRP54            SRP54-type protein, GTPase domain
     0.0013   19.2   0.0      0.004   17.6   0.0    1.9  2  AAA_16           AAA ATPase domain
     0.0014   18.6   0.0     0.0039   17.1   0.0    1.7  1  NACHT            NACHT domain
     0.0019   17.4   0.1      0.048   12.8   0.0    2.4  3  G-alpha          G-protein alpha subunit
     0.0024   17.4   0.0       0.27   10.7   0.0    2.4  2  Arf              ADP-ribosylation factor family
     0.0025   17.9   0.0      0.035   14.2   0.0    2.3  1  MMR_HSR1         50S ribosome-binding GTPase
     0.0027   17.4   0.0     0.0053   16.5   0.0    1.4  1  AAA_30           AAA domain
      0.003   17.7   0.7      0.016   15.4   0.0    2.4  2  AAA_33           AAA domain
     0.0039   16.4   0.5      0.007   15.6   0.0    1.6  2  NB-ARC           NB-ARC domain
     0.0051   16.6   0.0       0.01   15.6   0.0    1.5  1  PRK              Phosphoribulokinase / Uridine kinase family
  ------ inclusion threshold ------
      0.012   14.8   0.0      0.028   13.7   0.0    1.5  1  Zeta_toxin       Zeta toxin
      0.015   14.8   0.0       0.35   10.4   0.0    2.3  2  FeoB_N           Ferrous iron transport protein B
      0.017   14.6   0.0      0.034   13.7   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
       0.02   15.1   0.0        0.9    9.8   0.0    2.4  2  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.029   14.3   0.1         12    5.8   0.0    3.0  3  RsgA_GTPase      RsgA GTPase
      0.042   14.5   0.4       0.13   12.9   0.4    1.8  1  U1snRNP70_N      U1 small nuclear ribonucleoprotein of 70kDa 
      0.047   13.7   4.6      0.092   12.7   4.6    1.4  1  PGA2             Protein trafficking PGA2
      0.081   13.5   2.6       0.25   11.9   0.0    2.8  2  AAA_18           AAA domain
      0.082   12.8   0.0       0.53   10.2   0.0    2.0  2  ATPase_2         ATPase domain predominantly from Archaea
       0.11   12.3   0.0        3.7    7.3   0.0    2.5  2  CLP1_P           mRNA cleavage and polyadenylation factor CLP
       0.14   12.5   0.0       0.27   11.6   0.0    1.4  1  AAA_19           AAA domain
       0.19   11.5   0.1       0.96    9.2   0.0    2.1  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.39   10.4   0.0       0.39   10.4   0.0    1.9  2  Thymidylate_kin  Thymidylate kinase


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.6   0.0   2.7e-73   1.7e-70       1     239 [.      22     290 ..      22     292 .. 0.95
   2 ?   -1.1   0.0       2.1   1.3e+03     173     211 ..     291     327 ..     286     329 .. 0.66

  Alignments for each domain:
  == domain 1  score: 237.6 bits;  conditional E-value: 2.7e-73
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmedlglgpngalvvaleflresldwldeel........ekeed 91 
                 +vG+aGsGKttf+++++ +l++++++++v+NLDPA+ ++p++ ++dir+ +++e+vm++++lgpng++ ++l+++++++d++ + l        ek ++
  CCE28441.1  22 CVGMAGSGKTTFMQRINAHLHSQKQPPYVINLDPAVLTVPFDSNIDIRDSVNYEEVMKQYNLGPNGGILTSLNLFATKVDQVVSLLekraqpdpEKPDR 120
                 59********************************************************************************77775555666544422 PP

  ATP_bind_1  92 ...dyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkeklekeleffedveals 187
                    d +++DtPGQie f +s+s+ +++e+L+s+f++v+ y++D++r +++++f+s++l+a+s++++++lP+v v+nk+D+ +  + ++ e+++d+ea++
  CCE28441.1 121 kpiDRIIVDTPGQIEAFVWSASGTILLESLASSFPTVIAYVIDTPRTASTSTFMSNMLYACSILYKTKLPMVLVFNKTDVKD--AAFAKEWMTDFEAFQ 217
                 3678****************************************************************************55..9************** PP

  ATP_bind_1 188 lllekee.....................ekykklaeaiaelleefalvlrflplssekeesiedllslideal 239
                 ++l  +e                     +++ +l ++++ +leef+ +l+++ +ss+ +++++d++++i+e+ 
  CCE28441.1 218 EALRRDEeageegrdggmegsggghagsGYMGSLLNSMSLMLEEFYSHLSMVAVSSRLGTGVDDFFDAIEEKR 290
                 ***99999*************************************************************9976 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.1
  ATP_bind_1 173 lekeleffedvealslllekeeekykklaeaiaelleef 211
                 +e+  ++++++e+ ++  e+  +k k   ++++++l+++
  CCE28441.1 291 QEYVRDYLPELEKRRQQREQ--QKKKARDKELSRMLSDM 327
                 77788888888776665544..55667778888888776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   8.7e-08   5.4e-05       3      82 ..      18     139 ..      16     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 8.7e-08
      AAA_24   3 lkiliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdie...swedfldevvel................................ 59 
                 + i+++G +g+GKTt++ ++       ++ p +i+++  +  + +d   di+   ++e+++++++                                  
  CCE28441.1  18 VAIVCVGMAGSGKTTFMQRInahlhsqKQPPYVINLDPAVLTVPFDSNIDIRdsvNYEEVMKQYNLGpnggiltslnlfatkvdqvvsllekraqpdpe 116
                 6799*********************************************9999997777777777777777777777777777777999********99 PP

      AAA_24  60 aaeladyktlviDtideleelcl 82 
                 + + ++++ +++Dt +++e +++
  CCE28441.1 117 KPDRKPIDRIIVDTPGQIEAFVW 139
                 999999********999998876 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0012      0.76      28      68 ..      16      56 ..       8      60 .. 0.87
   2 !   11.7   0.0   0.00015      0.09     171     262 ..     192     323 ..     188     328 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0012
                -SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE--- CS
        MeaB 28 raqvvGltGvPGaGkstlvealglelrrrGkrvavlavDPs 68
                r   +   G+ G+Gk t+++++ ++l ++ +   v+ +DP+
  CCE28441.1 16 RPVAIVCVGMAGSGKTTFMQRINAHLHSQKQPPYVINLDPA 56
                55667788**********************99999999997 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00015
                 EEEEE---HHHHHHHHHHHHHHHHHCST........................................TBTTB--EEEEEBCCCTBSHHHHHHHHHHHH CS
        MeaB 171 iivvnkaDkkeaekaarelraaleleee........................................kekeWrpkvlktsavegeGidelvdaieehr 229
                 ++v nk+D k+a+ a+++++     +e                                         +e   +  ++ +s+  g G+d+++daiee r
  CCE28441.1 192 VLVFNKTDVKDAAFAKEWMTDFEAFQEAlrrdeeageegrdggmegsggghagsgymgsllnsmslmlEEFYSHLSMVAVSSRLGTGVDDFFDAIEEKR 290
                 678888888888888777665555554455567788888888888888888888888888888887643444455678899999************998 PP

                 HHHHHTTHHH.HHHHHHHHHHHHHHHHHHHHHHH CS
        MeaB 230 evlkktGlle.krrrerakeelrelvedellkrv 262
                 +   +  l e ++rr++++ + ++ ++d+ l+r+
  CCE28441.1 291 QEYVRDYLPElEKRRQQRE-QQKKKARDKELSRM 323
                 7555544444144443443.44555555555554 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.1e-06    0.0019       2     158 ..      19     206 ..      18     221 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.1e-06
                 EEEEEESTTCCHHHHHHHHH.....CT--....SS-EEEEESS-SSCHCCCC.CCHCCCT..EEEE.TTTTECCH...CTT-HHHHHHHHHHHH..... CS
        cobW   2 vtvltGflGsGKTtLlnhll.....enra....glklavivNefgevsiDae.llretgve.ivel.enGciCct...lredllkelealeere..... 80 
                 ++v +G  GsGKTt+++++      +++     +l+ av++  f   +iD +  ++ ++v+   +l  nG+i  +    ++++ ++++ l+e++     
  CCE28441.1  19 AIVCVGMAGSGKTTFMQRINahlhsQKQPpyviNLDPAVLTVPFD-SNIDIRdSVNYEEVMkQYNLgPNGGILTSlnlFATKVDQVVS-LLEKRaqpdp 115
                 57889************9998654322221222345566666665.555533023333222433442477776662322333333444.44444699** PP

                 .....TT-SEEEEEECTTTTHHHHHTTSHHHHHCCCE...CEEEEEEETTTH.CCHCCHHHHHHHHHHTSS.........EEEEE-HHHHCHC.. CS
        cobW  81 .....erldviliEttGlaePapvafteeelksdltl...davvavvDaknleaeeekieekaedqlaaad.........llvlnKtDlldeeal 158
                      + +d+i++ t G  e+  +  + + l ++l     +++ +v+D  ++     ++++ + ++l a++         +lv+nKtD+ d+++ 
  CCE28441.1 116 ekpdrKPIDRIIVDTPGQIEAFVWSASGTILLESLASsfpTVIAYVIDTPRT----ASTSTFMSNMLYACSilyktklpmVLVFNKTDVKDAAFA 206
                 ****999*****************5554444443333011455689999555....455555555555554111112222678999998888865 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.074        46       5      31 ..      19      45 ..      15      56 .. 0.84
   2 !   13.7   0.0   5.5e-05     0.034     108     190 ..     174     288 ..     115     292 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.074
                EEEEEESTTSSHHHHHHHHHHHTTSSC CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLlyktgais 31
                 i+ +g   +GKtT++ r+ ++++  +
  CCE28441.1 19 AIVCVGMAGSGKTTFMQRINAHLHSQK 45
                577889999**********99888765 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 5.5e-05
                 THHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT................................TTEEEEEEB CS
    GTP_EFTU 108 epqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekge................................kevpvvfgS 174
                 +++      ++ k ++p++++ NK D  +a + +   +  + +++  ++ e++ge+g+                                +  ++v +S
  CCE28441.1 174 MSNMLYACSILYKTKLPMVLVFNKTDVKDAAFAKEWMTDFEAFQEALRRDEEAGEEGRdggmegsggghagsgymgsllnsmslmleefySHLSMVAVS 272
                 555555667888999*************77666655555556644434444444444456667777777777777777777777777777899****** PP

                 TTTTBTHHHHHHHHHH CS
    GTP_EFTU 175 alkgegvktllealve 190
                 +  g gv+++++a+ e
  CCE28441.1 273 SRLGTGVDDFFDAIEE 288
                 ************9976 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.1e-06    0.0019       7      46 ..      19      61 ..      14     123 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.1e-06
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaee...erpevvfvt 46
                 +v++G +G+GKTt ++r+   l+ ++++ +    +p v++v 
  CCE28441.1 19 AIVCVGMAGSGKTTFMQRINAHLHSQKQPPYvinLDPAVLTVP 61
                589********************98877666665444444443 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.1e-05     0.019       2      38 ..      18      54 ..      17      56 .. 0.91
   2 ?    1.3   0.0      0.35   2.2e+02      78      95 ..     117     134 ..      95     139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.1e-05
                EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54  2 nvillvGlqGaGKTttlaKLaallkkegkkvllvaaD 38
                  i+ vG+ G+GKTt + ++ a+l+++++ + ++ +D
  CCE28441.1 18 VAIVCVGMAGSGKTTFMQRINAHLHSQKQPPYVINLD 54
                56899***********************999999887 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.35
                 HHHHTTSSEEEEEE--SS CS
       SRP54  78 kakeekidvvlvDTaGrl 95 
                 k +++ id ++vDT G+ 
  CCE28441.1 117 KPDRKPIDRIIVDTPGQI 134
                 5567889********986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.4e-06     0.004      21      63 ..      14      65 ..       7     208 .. 0.74
   2 ?   -2.0   0.0       6.5     4e+03     125     125 ..     322     322 ..     271     391 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6.4e-06
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekd.........ggiflrgkcdql 63
                ++rp +++++G++G+GK++ ++++  +l  +         +  +l+  +d++
  CCE28441.1 14 ASRPVAIVCVGMAGSGKTTFMQRINAHLHSQkqppyvinlDPAVLTVPFDSN 65
                67899********************999988776666665555566666655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 6.5
      AAA_16 125 r 125
                 r
  CCE28441.1 322 R 322
                 1 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.3e-06    0.0039       3      30 ..      20      47 ..      18      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.3e-06
                EEEEC-TTTCHHHHHHHHHHHHCTS-SC CS
       NACHT  3 vilqGeaGsGKTtLlqklalawaegklp 30
                ++  G aGsGKTt++q++   + ++k+p
  CCE28441.1 20 IVCVGMAGSGKTTFMQRINAHLHSQKQP 47
                6778**************9999999876 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   7.7e-05     0.048      21      49 ..      15      44 ..       3      80 .. 0.85
   2 ?    1.8   0.0      0.18   1.1e+02     268     281 ..     187     200 ..     172     219 .. 0.86
   3 ?   -3.1   0.0       5.3   3.3e+03     290     308 ..     293     311 ..     252     329 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.7e-05
                ..EEEEEEEESTTSSHHHHHHHHH.HHCS- CS
     G-alpha 21 krevkllllGqseSGKsTilkqlk.llykk 49
                +r+v ++++G ++SGK+T+++ +   l+ +
  CCE28441.1 15 SRPVAIVCVGMAGSGKTTFMQRINaHLHSQ 44
                4599*****************998666655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.18
                 TTSEEEEEEE-HHH CS
     G-alpha 268 kntpiiLflnKlDi 281
                  + p++L++nK+D+
  CCE28441.1 187 TKLPMVLVFNKTDV 200
                 5789*********6 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5.3
                 -GGGCCTT--H.CCHHHHH CS
     G-alpha 290 klskyfpsyegrkndlesv 308
                  +++y p+ e+r ++ e+ 
  CCE28441.1 293 YVRDYLPELEKRRQQREQQ 311
                 3333444444333333333 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00044      0.27      12      48 ..      15      51 ..       7      82 .. 0.89
   2 ?    4.2   0.0     0.042        26      85     136 ..     158     209 ..     153     223 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00044
                TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSE CS
         Arf 12 kkelrilllGLDnaGKtTilkklkleelvttvPTigf 48
                ++ + i+ +G+ ++GKtT +++++ +  ++ +P    
  CCE28441.1 15 SRPVAIVCVGMAGSGKTTFMQRINAHLHSQKQPPYVI 51
                57788*******************9999999986655 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.042
                 EEEEEETT-CTTHHHHHHHHHHHCTSGCCT...TSEEEEEEE-TTSTTSS-HHHH CS
         Arf  85 vifvvDsadreRleeakeeLkalleeeelk...evallvlaNKqDlpealseeel 136
                 + +v+D+    R +++++ ++++l    +    + +++++ NK D+++a+ ++e 
  CCE28441.1 158 IAYVIDTP---RTASTSTFMSNMLYACSILyktKLPMVLVFNKTDVKDAAFAKEW 209
                 56777665...44555555555554444322238999999********9988775 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   5.6e-05     0.035       2     114 .]      20     197 ..      19     197 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.6e-05
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE.................................................... CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke.................................................... 47 
                 +++vG+  +GK+t+++++    +++ +      +d+   +v ++  +                                                    
  CCE28441.1  20 IVCVGMAGSGKTTFMQRINAHlHSQKQPPYVINLDPAVLTVPFDS-Nidirdsvnyeevmkqynlgpnggiltslnlfatkvdqvvsllekraqpdpek 117
                 789999999****99999765344444444566666666666442.13455566677777788888888888888888899999999999999999999 PP

                 .......EEEEECGGCSS...HHHHHHHHHHHHHHHHCTSEEEEEEETT....TTCSHHHHHHHHHHHHH......TTSEEEEEEES CS
    MMR_HSR1  48 .......ielvDtpGlie...gaseekglgkaflaleeadlillvvdas....eeklkpldeeleellee......akkplilvlnk 114
                         ++vDtpG ie    + ++  l +++++     +i++v+d      +         + ++l        +k p++lv+nk
  CCE28441.1 118 pdrkpidRIIVDTPGQIEafvWSASGTILLESLASSF-PTVIAYVIDTPrtasT------STFMSNMLYAcsilykTKLPMVLVFNK 197
                 999998899******8874443333334444444422.49*******5543332......34444444334444449999*****98 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.6e-06    0.0053      16      46 ..      15      45 ..       4      58 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.6e-06
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaag 46
                s+    v +G AG+GKtt ++ +++++++++
  CCE28441.1 15 SRPVAIVCVGMAGSGKTTFMQRINAHLHSQK 45
                44457789***************88887764 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.6e-05     0.016       2      31 ..      20      54 ..      20     113 .. 0.78
   2 ?   -0.8   0.4       2.6   1.6e+03     110     137 ..     300     324 ..     292     329 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.6e-05
      AAA_33  2 vllvGlpGsGKstlaerl.....lkklgavllssd 31
                +++vG++GsGK+t+ +r+      +k++ ++++ d
  CCE28441.1 20 IVCVGMAGSGKTTFMQRInahlhSQKQPPYVINLD 54
                689*************9844443333336666666 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.6
      AAA_33 110 tlkeRlakRaangddrsevpeealdrqk 137
                 +l++R ++R++++++   +  + l r++
  CCE28441.1 300 ELEKRRQQREQQKKK---ARDKELSRML 324
                 567888888887543...5666666665 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.1e-05     0.007      23      45 ..      20      42 ..      12      53 .. 0.83
   2 ?   -3.7   0.4       8.8   5.5e+03      74     101 ..     299     325 ..     289     328 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.1e-05
                EEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC 23 valvGmgGvGKttlakqilnksd 45
                +  vGm+G+GKtt ++ i+ +++
  CCE28441.1 20 IVCVGMAGSGKTTFMQRINAHLH 42
                6779**************99855 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.8
                 HHHHCCCTTSSSS-STTSHHHHHHHHCC CS
      NB-ARC  74 keLslseddleekeeveslkrklvrlLl 101
                  eL+++ +++e+++++  + ++l r+L 
  CCE28441.1 299 PELEKRRQQREQQKKKA-RDKELSRMLS 325
                 56666655555555444.6777777765 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.7e-05      0.01       4      53 ..      22      71 ..      19      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-05
         PRK  4 vagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleer 53
                  g  G+Gktt++++++  +  +k ++ +i++d  + ++ ++ ++ +++ 
  CCE28441.1 22 CVGMAGSGKTTFMQRINAHLHSQKQPPYVINLDPAVLTVPFDSNIDIRDS 71
                56899****************************99999999999988876 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.5e-05     0.028      13      45 ..      14      46 ..       4      58 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.5e-05
  Zeta_toxin 13 qerPklillgGqpGAGKselaellkdelerqgn 45
                 +rP++i+ +G  G+GK++ ++ +++ l++q++
  CCE28441.1 14 ASRPVAIVCVGMAGSGKTTFMQRINAHLHSQKQ 46
                58***********************99985443 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.25   1.5e+02       2      21 ..      19      38 ..      18      44 .. 0.86
   2 ?   10.4   0.0   0.00056      0.35      50     120 ..     126     203 ..     116     222 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.25
                EEEEEESTTSSHHHHHHHHH CS
      FeoB_N  2 tvalvGnpnvGkttlfnalt 21
                 +++vG   +Gktt++ ++ 
  CCE28441.1 19 AIVCVGMAGSGKTTFMQRIN 38
                5899***********99875 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00056
                 EEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEE.......GGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHH CS
      FeoB_N  50 eivDlPGiYslsayseeekvardflleeepdvvvnvvd.......atnlernLyLtlqllelgvpvvlalnmideaek 120
                  ivD PG  +    s   ++  + l+++ p v+  v+d       +t +   Ly    l  +++p+vl++n++d+ ++
  CCE28441.1 126 IIVDTPGQIEAFVWSASGTILLESLASSFPTVIAYVIDtprtastSTFMSNMLYACSILYKTKLPMVLVFNKTDVKDA 203
                 699***********************************4443333345778899999999************997554 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.4e-05     0.034      35      70 ..      19      54 ..      12      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.4e-05
       AAA_7 35 pvllvGptGtGKtviikdllkkldkekylsltinfs 70
                 +++vG +G+GKt+ ++++  +l+++k  + +in+ 
  CCE28441.1 19 AIVCVGMAGSGKTTFMQRINAHLHSQKQPPYVINLD 54
                6899***********************999999985 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0015       0.9       2      29 ..      20      47 ..      19      67 .. 0.84
   2 ?    2.8   0.0      0.21   1.3e+02     104     119 ..     184     199 ..     123     219 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0015
                EEEESSTTSSHHHHHHCHCT-CCC-EEE CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfsekek 29
                +v+vG +g+GKt++++r+  +  s+k+ 
  CCE28441.1 20 IVCVGMAGSGKTTFMQRINAHLHSQKQP 47
                899**************98776666654 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.21
                 HHCSSS-EEEEEE-TT CS
         Roc 104 kvagkspvilvgnkiD 119
                  + +k p++lv nk+D
  CCE28441.1 184 LYKTKLPMVLVFNKTD 199
                 2344557777777776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.038        24     101     125 ..      19      43 ..       5      50 .. 0.85
   2 ?   -1.9   0.0       4.5   2.8e+03     153     160 ..     125     132 ..     122     137 .. 0.81
   3 ?    5.8   0.0     0.019        12      42      75 ..     184     216 ..     156     230 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.038
                  EEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelel 125
                   +v vG  G GK+t++ +++ +l+ 
   CCE28441.1  19 AIVCVGMAGSGKTTFMQRINAHLHS 43 
                  56889************99987654 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.5
                  EEEESS-S CS
  RsgA_GTPase 153 glliDtPG 160
                   +++DtPG
   CCE28441.1 125 RIIVDTPG 132
                  589****9 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.019
                  HHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHT CS
  RsgA_GTPase  42 aeekgiepvivlnKiDlleeeeeleelkeeleal 75 
                  + ++++++v+v+nK+D+ + +  ++e+++++ea+
   CCE28441.1 184 LYKTKLPMVLVFNKTDVKDAAF-AKEWMTDFEAF 216
                  468999**********999988.88888888776 PP

>> U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   0.00021      0.13      37      86 ..     277     325 ..     269     329 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00021
  U1snRNP70_N  37 tGvaaflselkedeeeqeppektetk.eekkererkekkekkeekleeale 86 
                  tGv +f ++++e  ++qe+      + e+++++++++kk+++ ++l ++l+
   CCE28441.1 277 TGVDDFFDAIEE--KRQEYVRDYLPElEKRRQQREQQKKKARDKELSRMLS 325
                  8*********65..5666555444441566667777788888888988887 PP

>> PGA2  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   4.6   0.00015     0.092      29      99 ..     294     374 ..     293     381 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00015
        PGA2  29 lRPYleklfkklqekqrekeeekeeaeekaa.....kkakvspnalRggeaks.........gesdedddegeeeedvakasgvp 99 
                 +R Yl +l k+ q+++++k+++++++  +            ++n   g+  ++          + d+ddde+ +++d+++a+++ 
  CCE28441.1 294 VRDYLPELEKRRQQREQQKKKARDKELSRMLsdmnvGD---GANGANGAGGRTgasdsdvevASDDNDDDEE-DDSDMEAAKEGL 374
                 68899999999999999999888888766665644434...4555555544423557899966666666665.557766666554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00041      0.25       1      25 [.      20      50 ..      20     148 .. 0.71
   2 ?   -1.3   0.8       4.7   2.9e+03     105     126 ..     300     321 ..     293     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00041
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf......g 25
                I+  G++G+GKtt+ ++++ +l++      +
  CCE28441.1 20 IVCVGMAGSGKTTFMQRINAHLHSqkqppyV 50
                5668**************9998555555552 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 4.7
      AAA_18 105 elleRlekRgyeeakikeneea 126
                 el +R ++R+++++k +++e +
  CCE28441.1 300 ELEKRRQQREQQKKKARDKELS 321
                 7889999999888887766655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00085      0.53      23      58 ..      20      54 ..      13     114 .. 0.80
   2 ?   -0.1   0.0       1.1     7e+02      53      95 ..     282     324 ..     264     332 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00085
    ATPase_2 23 yfiYGpegsGKtaLlkeiienledkdkyviyyialr 58
                ++  G  gsGKt+++++i   l +++k+  y+i+l 
  CCE28441.1 20 IVCVGMAGSGKTTFMQRINAHL-HSQKQPPYVINLD 54
                567799********98865555.7789999999986 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.1
    ATPase_2  53 yyialreesiskldefieeeeekkklekalgiavpkaeleeil 95 
                 +++a++e++++++++++ e e++++ +++ +++ + +el ++l
  CCE28441.1 282 FFDAIEEKRQEYVRDYLPELEKRRQQREQQKKKARDKELSRML 324
                 6778888888888888876666666666666666666655554 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.006       3.7       1      32 [.      24      55 ..      24      61 .. 0.92
   2 ?    2.3   0.0      0.21   1.3e+02      95     117 ..     115     137 ..      91     182 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.006
      CLP1_P  1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDv 32
                G   sGK+T+++ +   + ++++ p +++lD+
  CCE28441.1 24 GMAGSGKTTFMQRINAHLHSQKQPPYVINLDP 55
                5678***************************9 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.21
      CLP1_P  95 leenkkakasgliIntpGwvkgl 117
                  e+ ++   +++i++tpG ++ +
  CCE28441.1 115 PEKPDRKPIDRIIVDTPGQIEAF 137
                 34444556789*******99843 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00043      0.27      10      39 ..      16      46 ..       6      64 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00043
      AAA_19 10 ekv.llvtaGpGtGKTrvlkhivallvelgg 39
                ++v ++ ++ +G+GKT+ ++ i a+l ++++
  CCE28441.1 16 RPVaIVCVGMAGSGKTTFMQRINAHLHSQKQ 46
                3440344688****************99985 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0016      0.96       4      24 ..      20      40 ..      18      61 .. 0.82
   2 ?   -1.0   0.1       2.2   1.4e+03      40      47 ..     127     134 ..     122     211 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0016
   PduV-EutP  4 illiGkvgsGKttLtqalkge 24
                i+ +G  gsGKtt +q+++ +
  CCE28441.1 20 IVCVGMAGSGKTTFMQRINAH 40
                7889**************864 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.2
   PduV-EutP  40 viDtPGey 47 
                 ++DtPG+ 
  CCE28441.1 127 IVDTPGQI 134
                 57888762 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00064      0.39       3      29 ..      24      51 ..      24      59 .. 0.87
   2 ?   -3.1   0.0       8.8   5.4e+03     143     175 ..     362     394 ..     349     398 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00064
                     ESTTSSHHHHHHHHHHHHHHTTE..EEE CS
  Thymidylate_kin  3 GlDGaGKttqaellkerlkeegik.vvl 29
                     G+ G+GKtt+++ + ++l++++   +v+
       CCE28441.1 24 GMAGSGKTTFMQRINAHLHSQKQPpYVI 51
                     889*****************99876665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.8
                      TSHHHHHHHHHHHHHHHHHHHHTTSTEEEEETT CS
  Thymidylate_kin 143 eeeeeqldflrkvrerylelakederiliidas 175
                      e++   +   + ++ery++++ +de  +  das
       CCE28441.1 362 EDDSDMEAAKEGLQERYQAAMGDDEDSVLADAS 394
                      333444455577888888888777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1601  (0.0892967); expected 358.6 (0.02)
Passed bias filter:                      966  (0.0538792); expected 358.6 (0.02)
Passed Vit filter:                       159  (0.00886831); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 2886.27
//
Query:       CCE28442.1  [L=294]
Description: uncharacterized protein CPUR_01917 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-39  133.7   0.0    6.4e-39  133.2   0.0    1.2  1  DRE2_N    Fe-S cluster assembly protein DRE2 N-terminus
    1.3e-38  131.5   5.1    2.3e-38  130.7   5.1    1.4  1  CIAPIN1   Cytokine-induced anti-apoptosis inhibitor 1, Fe-S b


Domain annotation for each model (and alignments):
>> DRE2_N  Fe-S cluster assembly protein DRE2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.0   7.1e-43   6.4e-39       1     131 []      19     147 ..      19     147 .. 0.93

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 7.1e-43
                 EEEEEEE-HHHHTSHHHHHHHHHHHHTTEEEEEEEHHHHHHT-----SSS--SEEEE---......SS-S----HHHHHHHHTT--TT--EE---H... CS
      DRE2_N   1 krtLLLapPsvathpekleaikklydsrsstdlqmlDRlaaglvsLpastYdlvllltde....eeeeeelliprkliqkivkaLkpgGklkgqdgkak 95 
                 kr LLLapPsva+h+ekl++++++yd rs+tdlqmlDRl+ag+vsLp++tYd+vl+l+d+      e+++ll+ r+l++++v ++kpgG+l+ qdg+a 
  CCE28442.1  19 KRNLLLAPPSVAAHEEKLRDVFTVYD-RSNTDLQMLDRLSAGFVSLPNATYDVVLVLSDAdgsrGAESTQLLN-RHLFTTLVPSIKPGGRLRFQDGQAS 115
                 589***********************.***********************************97444446776.************************* PP

                 .HHHHHHHHHTEEEE-SSS..EEE-XXXXXXXXXXX CS
      DRE2_N  96 eaqkleallaGlvieeeekgelvKpeqeeeeavpLk 131
                 +a+++ea+laGlv++   +++++K++  ee++vpL+
  CCE28442.1 116 AAESREAILAGLVAK---EDGFEKQDD-EEVVVPLR 147
                 **************7...446****88.59****97 PP

>> CIAPIN1  Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   5.1   2.5e-42   2.3e-38       4     100 .]     195     288 ..     192     288 .. 0.95

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 2.5e-42
     CIAPIN1   4 kpeeCekkakkrrkackdctCGlkeleeeeekkkraaadkalekkvkleeeelaevdftvegktssCgsCaLGDafrCsgCPylGlPafkpGekvel 100
                  p++C++  +krr+ ckdctCGl+ + e+eek++ra+ad++le+ +kl++++l+e+dftv+gkt+sC++C+LGDafrCs+CP++GlPafkpGe+v++
  CCE28442.1 195 APTDCQP--QKRRRPCKDCTCGLAAKFEAEEKERRAQADANLEA-IKLDSNDLNELDFTVKGKTGSCNNCSLGDAFRCSTCPFIGLPAFKPGEEVRI 288
                 5778987..89******************************987.9*************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2476.21
//
Query:       CCE28443.1  [L=220]
Description: related to histidine triad protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-17   63.4   0.0    9.9e-17   61.5   0.0    1.8  2  HIT       HIT domain
    7.8e-05   23.1   0.0     0.0002   21.8   0.0    1.6  2  DcpS_C    Scavenger mRNA decapping enzyme C-term binding
     0.0029   17.5   0.0     0.0058   16.5   0.0    1.4  1  CwfJ_C_1  Protein similar to CwfJ C-terminus 1


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   1.7e-20   9.9e-17       6      96 ..      41     131 ..      37     133 .. 0.96
   2 ?   -0.7   0.0      0.42   2.5e+03      49      76 ..     164     191 ..     153     198 .. 0.73

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 1.7e-20
                 CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC- CS
         HIT   6 stvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHviprr 96 
                 s +v+ ++l +afldi p + ghlL++p++h ++l+d+t +e  +l   v+ + +al +    +  +v+ nnga+a q+v+h+H Hvipr 
  CCE28443.1  41 SFIVLSTPLLIAFLDIMPLSHGHLLLCPRAHRPKLTDATRQESLQLGDSVRILSAALARATGVEDWNVLQNNGAAAAQVVPHMHYHVIPRP 131
                 67999************************************************************************************95 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHHHHHTCTTCCCEEEEEE CS
         HIT  49 akllsavkkvakalqkkfknkglrvvin 76 
                 ++++++v +v++++++++ ++++r  +n
  CCE28443.1 164 GRIREEVARVMREEEEVVDKDRIREEKN 191
                 5667778888888888877777776555 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.3e-08    0.0002      16     101 ..      43     129 ..      36     139 .. 0.82
   2 ?   -2.5   0.1       1.2     7e+03      61      82 ..     165     186 ..     153     192 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.3e-08
                 EEEE-SSEEEEE-SS-SSSEEEEEEESS---SGGG-.-TTTTTHHHHHHHHHHHHHHHTT-T-EEEEE--SCCCT--S-S--EEEEE CS
      DcpS_C  16 vvyedekfvvlkDikpkaklhllvipkrdikslrdL.tkehlpllkemrekakkvieekynevdaeelrvgvhyqPsvyhlHlHvis 101
                 +v+++  ++++ Di p ++ hll  p+++ ++l+d  ++e l+l  ++r    ++++    e      + g  +++ v h+H Hvi 
  CCE28443.1  43 IVLSTPLLIAFLDIMPLSHGHLLLCPRAHRPKLTDAtRQESLQLGDSVRILSAALARATGVEDWNVLQNNGAAAAQVVPHMHYHVIP 129
                 466778899**************************94556666667777777777777777777777899***************95 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHTT-T-EEEEE CS
      DcpS_C  61 emrekakkvieekynevdaeel 82 
                 ++re++  v++e+ + vd++ +
  CCE28443.1 165 RIREEVARVMREEEEVVDKDRI 186
                 6677777777777655666655 PP

>> CwfJ_C_1  Protein similar to CwfJ C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   9.6e-07    0.0058      38     114 ..      52     135 ..      38     143 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.6e-07
                 E---.S-SSTT-EEEEESS--SSTTSS-H....HHHHHHHHHHHHHHHHHHHTT--EEEEEE-..SSS-----EEEEE--HHHH CS
    CwfJ_C_1  38 alpk.gpLssgHvliipieHisallslde....evldeirkfrkalvkmykkqdkdavvfEis..sersvHlaiqvipvpksis 114
                 a    +pLs+gH+l+ p +H+++l+ +      ++ d++r   +al++    +d +++    +   +  +H++ +vip p++++
  CCE28443.1  52 AFLDiMPLSHGHLLLCPRAHRPKLTDATRqeslQLGDSVRILSAALARATGVEDWNVLQNNGAaaAQVVPHMHYHVIPRPEIRA 135
                 555559****************997665544568889************999999999998877788899********998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1742.23
//
Query:       CCE28444.1  [L=196]
Description: putative protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.27   11.5   0.5       0.27   11.5   0.5    8.0  5  Hist_rich_Ca-bd  Histidine-rich Calcium-binding repeat region


Domain annotation for each model (and alignments):
>> Hist_rich_Ca-bd  Histidine-rich Calcium-binding repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   1.5e-05      0.27       4      15 .]       6      17 ..       4      17 .. 0.95
   2 ?   -2.0   0.5      0.27   4.9e+03       8      12 ..      25      28 ..      23      29 .. 0.53
   3 ?  -29.7  35.7         1   1.8e+04       8      14 ..      58      64 ..      38      65 .. 0.70
   4 ?   -7.1   9.1         1   1.8e+04       8      14 ..      71      77 ..      70      88 .. 0.74
   5 ?   -4.2   1.9         1   1.8e+04      11      15 .]     161     165 ..     159     165 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.5e-05
  Hist_rich_Ca-bd  4 qGHreEEDEDeS 15
                     +GH eEE+E +S
       CCE28444.1  6 RGHNEEEEELVS 17
                     9********998 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.27
  Hist_rich_Ca-bd  8 eEEDE 12
                     eEE E
       CCE28444.1 25 EEE-E 28
                     444.3 PP

  == domain 3  score: -29.7 bits;  conditional E-value: 1
  Hist_rich_Ca-bd  8 eEEDEDe 14
                     +++D+D+
       CCE28444.1 58 VDDDDDD 64
                     4555555 PP

  == domain 4  score: -7.1 bits;  conditional E-value: 1
  Hist_rich_Ca-bd  8 eEEDEDe 14
                     +E++E +
       CCE28444.1 71 KEDEEAD 77
                     6766654 PP

  == domain 5  score: -4.2 bits;  conditional E-value: 1
  Hist_rich_Ca-bd  11 DEDeS 15 
                      D D++
       CCE28444.1 161 DSDVD 165
                      89998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1172  (0.065369); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                       130  (0.00725082); expected 17.9 (0.001)
Passed Fwd filter:                        71  (0.00396006); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.13u 0.32s 00:00:01.45 Elapsed: 00:00:00.47
# Mc/sec: 1241.87
//
Query:       CCE28445.1  [L=1008]
Description: related to RAB GTPase activator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-34  117.5   0.0    1.4e-16   60.8   0.0    3.2  3  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   4.1e-05      0.73      29      64 ..     636     670 ..     617     680 .. 0.71
   2 !   60.8   0.0   7.6e-21   1.4e-16      63     155 ..     711     802 ..     678     811 .. 0.89
   3 !   43.5   0.1   1.5e-15   2.7e-11     164     214 ..     846     896 ..     835     897 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 4.1e-05
  RabGAP-TBC  29 eksekeksklekseeskelsqIkkDvprtfpesesf 64 
                 ++s  +++ l++s++  + ++I++D++rtfp ++++
  CCE28445.1 636 KYSGLYEKLLHQSAKLVDVEAIERDLHRTFP-DNIQ 670
                 456667777888888889*************.3322 PP

  == domain 2  score: 60.8 bits;  conditional E-value: 7.6e-21
  RabGAP-TBC  63 sfknkqgqnqLeriLkaysiynpevgYcqGmndivaplllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykh 155
                   +++++  +L+r+L+a+s+ynp +gYcq +n+++++lll++  ee++Fw++  +    +l+  +  sl+g k +l vl   l++ +p+++++
  CCE28445.1 711 VADEPPIITSLRRVLHAFSVYNPRIGYCQSLNFLAGLLLLFVETEEQCFWLLNVIT-IIYLPGTHDMSLEGSKVDLGVLMTELRDSMPSVWDK 802
                 567789999**********************************************9.99*****************************99986 PP

  == domain 3  score: 43.5 bits;  conditional E-value: 1.5e-15
  RabGAP-TBC 164 elfaikwfltlflrefpletvlrlwD.lllegekfvllrvalailklleeel 214
                 +l ++ wf+ +++ ++p+et+lr+wD +++eg+k+ l+r+alai+k  e+e+
  CCE28445.1 846 TLCMTAWFMSCYIGTLPIETTLRVWDvFFYEGSKT-LFRIALAIFKVGESEI 896
                 67899*********************9999***99.**********998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1008 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 6687.40
//
Query:       CCE28446.1  [L=191]
Description: probable ubiquitin-protein ligase UBC4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-36  124.7   0.1    2.5e-36  124.4   0.1    1.1  1  UQ_con     Ubiquitin-conjugating enzyme
    2.1e-05   24.2   0.0      3e-05   23.7   0.0    1.3  1  Prok-E2_B  Prokaryotic E2 family B
  ------ inclusion threshold ------
      0.014   15.7   0.2      0.024   14.9   0.2    1.5  1  RWD        RWD domain
      0.019   14.3   2.6      0.024   14.1   2.6    1.1  1  CobT       Cobalamin biosynthesis protein CobT
       0.08   12.8   0.1       0.14   12.0   0.1    1.4  1  UEV        UEV domain
       0.11   12.0   3.7       0.14   11.6   3.7    1.2  1  DUF4746    Domain of unknown function (DUF4746)


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.1   8.2e-40   2.5e-36       1     139 [.       8     148 ..       8     149 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 8.2e-40
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE..TTSBB-CGGGSTTT--TTSHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd..ksGevcldiLkeekWspaltl 97 
                 r++ke++e ak++p+ ++ +l +d+nl +w+++   p+++p++ g + l l++p++YP+kpP ++fvt+i+HPnv    +G+vcl +Lk e W+p+l+l
  CCE28446.1   8 RIAKEYAECAKSPPPHLTLSLPNDSNLHTWHITYASPSESPFHPGRYGLILTLPPEYPFKPPLLRFVTRIYHPNVTndDQGNVCLAMLKPEAWKPSLKL 106
                 799********************9***************************************************87789******************* PP

                 HHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con  98 esvllsiqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                 + vl  i +L+ ep+  +p++ ++a++++++r+++ k+++e+
  CCE28446.1 107 KMVLEMIRQLMIEPQAGDPMEPDIAAEYREERQRWGKRAQEM 148
                 ***********************************9999875 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0     1e-08     3e-05      33     129 ..      46     146 ..       7     150 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1e-08
   Prok-E2_B  33 t...sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLnegisgde.....daefagEfqs 123
                 +   ++g + l l +p+++p+ pp  + + +  +  +   n ++g +Cl+   l++++w+p   ++ vle ++q++ e ++gd       ae ++E q 
  CCE28446.1  46 EspfHPGRYGLILTLPPEYPFKPPLLRFVTRI-Y-HPNVTNDDQGNVCLA--MLKPEAWKPSLKLKMVLEMIRQLMIEPQAGDPmepdiAAEYREERQR 140
                 144499*********************99998.3.244456666******..****************************9999877777777777777 PP

   Prok-E2_B 124 Ywesee 129
                 + ++++
  CCE28446.1 141 WGKRAQ 146
                 666665 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.2   7.9e-06     0.024      51     110 ..      50     114 ..       3     126 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.9e-06
                 -CEEEEEEEEE-SSTTSS--EEEEEECC...SS-HHHHHH.HHHHHH.HHHHHTTTS--CHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxx RF
         RWD  51 kkpslkleiklpeeYPeeaPiislsste...nlpkeqvks.leekle.elaeenlgepvifalid 110
                 ++ ++ l+ +lp+eYP ++P +++ +     n++++++ + +   l+ e ++  l   ++ ++i 
  CCE28446.1  50 HPGRYGLILTLPPEYPFKPPLLRFVTRIyhpNVTNDDQGNvCLAMLKpEAWKPSLKLKMVLEMIR 114
                 56678899*************99999888886776666664444443245555566666666665 PP

>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   2.6   7.9e-06     0.024     158     237 ..     106     188 ..     100     191 .] 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.9e-06
        CobT 158 aekvvdlwRe.fieekagkdl..drlaealeDqkaFaravrqlLqdldlaeesaeepeeedeeeeedeeeeeeeseeeeeege 237
                  + v++++R+ +ie++ag+ +  d  ae  e+ ++ ++ ++++ ++  ++e   +e+e+++e+ ee+e+e++ e+ee e++ge
  CCE28446.1 106 LKMVLEMIRQlMIEPQAGDPMepDIAAEYREERQRWGKRAQEMVKKYAMGEPDFQEKEKKKEKGEEEEGEKKGEEEEGEKKGE 188
                 5678899998569999999872245788899999****************777777777766666666666666554455555 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   4.6e-05      0.14      53     116 ..      57     121 ..      52     126 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
                 EEE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHH..S--T..TT--HHHHHHHHHH--- CS
         UEV  53 liwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLe..eWkr..eksnlvslvqelaqafe 116
                 ++ ++ +yP+++P++    +     ++n   d qG+v l +L+   Wk+  + + +++++++l+   +
  CCE28446.1  57 ILTLPPEYPFKPPLLRFVTRIY---HPNVTNDDQGNVCLAMLKpeAWKPslKLKMVLEMIRQLMIEPQ 121
                 78899********987665444...677799***********64479994222224455555555555 PP

>> DUF4746  Domain of unknown function (DUF4746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.7   4.7e-05      0.14      55     126 ..     102     183 ..      59     189 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.7e-05
     DUF4746  55 Pplieplevkveveee............eelveevsseeetlekqekekektkakeaeltadepaeeeeaeeeeeeeaveeeee 126
                 P l  +l++  e+ ++              ++ e ++e++++ k ++e  k+ a  + + +++++++e+ eeee+e++ eeee 
  CCE28446.1 102 PSL--KLKMVLEMIRQlmiepqagdpmePDIAAEYREERQRWGKRAQEMVKKYAMGEPDFQEKEKKKEKGEEEEGEKKGEEEEG 183
                 555..4444444444444434444446567888899999999999888888774443333333444444444444444444422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1121  (0.0625244); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1446.72
//
Query:       CCE28447.1  [L=257]
Description: related to RRP1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-53  180.5   0.0    4.5e-53  180.2   0.0    1.1  1  Nop52     Nucleolar protein,Nop52


Domain annotation for each model (and alignments):
>> Nop52  Nucleolar protein,Nop52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   0.0   2.5e-57   4.5e-53       2     171 ..      12     181 ..      11     225 .. 0.87

  Alignments for each domain:
  == domain 1  score: 180.2 bits;  conditional E-value: 2.5e-57
       Nop52   2 klakkLasndkktRdkalksLrkfLskkkkkklselellkLwkGLFycmWmsDkplvQqelaeeLaelvkslkskeaalkFlkafwetmsreWkgiDkl 100
                 +++k+Las+d+k+R+++l++L++fLs+k +  ls  e lkLw GL+y++Wm+D+p++Qq la+eLa+l  sl+  +++ +Fl afw+++s++W++iD l
  CCE28447.1  12 PFIKNLASSDRKLRTQSLTTLQSFLSTKPN--LSLPEALKLWTGLYYALWMTDRPRPQQALATELASLSFSLP-PSSQAPFLIAFWQILSKQWTHIDAL 107
                 8***************************95..9****************************************.59*********************** PP

       Nop52 101 RlDKfllLvRrvlreslkllkkeewdkelveeylevlketplssedkk.vpnglayhladiyldelek..vles 171
                 R+DKfllLvRrv+++  ++ ++++w  + v+++le+l++++++ +++  v  gl++h++d+++de+e+  +l +
  CCE28447.1 108 RMDKFLLLVRRVFAAHVRCARESRWTGSQVDKLLEILEHECFDAQERGdVALGLRLHVLDLWVDEMERehALGD 181
                 ****************************************99877665599***************99433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1976.25
//
Query:       CCE28448.1  [L=1275]
Description: uncharacterized protein CPUR_01923 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1499  (0.0836076); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.98u 0.28s 00:00:01.26 Elapsed: 00:00:00.43
# Mc/sec: 8879.52
//
Query:       CCE28449.1  [L=162]
Description: uncharacterized protein CPUR_01924 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1159.06
//
Query:       CCE28450.1  [L=774]
Description: uncharacterized protein CPUR_01925 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.4e-127  423.4   1.2   8.1e-127  422.8   1.2    1.3  1  NAGLU     Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel do
    7.3e-69  232.3   0.7    7.3e-69  232.3   0.7    1.7  2  NAGLU_C   Alpha-N-acetylglucosaminidase (NAGLU) C-terminal do
    1.1e-13   50.7   0.0    2.2e-13   49.7   0.0    1.5  1  NAGLU_N   Alpha-N-acetylglucosaminidase (NAGLU) N-terminal do


Domain annotation for each model (and alignments):
>> NAGLU  Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  422.8   1.2  1.4e-130  8.1e-127       1     332 [.     123     462 ..     123     463 .. 0.97

  Alignments for each domain:
  == domain 1  score: 422.8 bits;  conditional E-value: 1.4e-130
                 EEE--TTHHHHTTTT--HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--S.TT..----TTHHHHHHHH CS
       NAGLU   1 RyylNvctfsYtmafwdwerWereiDwmAlnGinlpLaivGqeavwqevlkelglsdeeikeflsgpaflawqrmgnleg.wg..gplpqswiekqaeL 96 
                 Ry+lN++tfsYt+a+w+w++We+ +Dw Al+Ginl+La+vG+e+++ + ++elgl+de+i  f+sgpaf+aw+r+gn +g wg  g lp  +ie+q++L
  CCE28450.1 123 RYNLNTVTFSYTFAWWQWKDWEKFLDWAALRGINLQLAWVGYEKIFLDSFRELGLKDEDILPFFSGPAFQAWNRFGNTQGsWGgkGGLPLGFIEQQFNL 221
                 9******************************************************************************99973356************ PP

                 HHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETT.....EE--EEE-SS--HHHHHHHHHHHHHHHHH-.--SEEE--TTTTS-..-- CS
       NAGLU  97 qkkilkrmrelgmtpvlpaFaGhvPkalkeklpkakvteqgewsg.....fkrpafldptdplfakiakafleeqkklyg.tshiYaaDpFnEgepkss 189
                 qkki++rm elg+tpvlpaF G+vPk +k++ p++++t++ +w       ++r+ fl+p d ++a+++k f+++q +++g ++++Y++D+FnE +p+s 
  CCE28450.1 222 QKKIVARMVELGITPVLPAFPGFVPKCIKKVRPNVNLTTSPNWFPpapdkYTRDLFLSPLDGTYAELQKLFIDKQMAVFGnVTNVYTLDQFNELNPASG 320
                 *******************************************9889999******************************99***************** PP

                 TT--HHHHHHHHHHHHHHH-TT-EEEEEEBTT.........BS-HHHHTT-S.GGGEEEEETTTTTS-......HTTT--EEEEE---STT--SS---H CS
       NAGLU 190 deeylaavskaiykalkaadpkavWvlqgWlfvsdkkfWtkerveallsavp.kdklliLDlfsekkpvwkrtksfegkpwiwcmlhnfGgrtglyGkl 287
                 d++yl+++s+++y+ l+aa+p+avW++qgWlf+s+++fWt++r++a+l +v  ++ +liLDl+se +p+w+rtk++ gk+wiwc+lh fGg++ l+G++
  CCE28450.1 321 DTKYLSDISNSTYNGLTAANPAAVWLIQGWLFYSSRDFWTQRRIDAYLGGVAdDQGMLILDLWSEGNPQWQRTKNYAGKRWIWCQLHGFGGNMALEGRV 419
                 ***************************************************95677******************************************* PP

                 HHHHHHHHHHHHT-S...EEEEEE--S-S-S-HHHHHHHHHGGG- CS
       NAGLU 288 ekvaseiaealakkeksklvGiGltpEgiennpvvyelllelaws 332
                 +++++++ +al+   +++lvG+GltpEg+e n++vy++ll++aw 
  CCE28450.1 420 QTITKGPLDALSL--SKSLVGFGLTPEGFEGNEIVYDILLDQAWA 462
                 ***********55..557**************************6 PP

>> NAGLU_C  Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3      0.34     2e+03     179     196 ..     381     401 ..     377     402 .. 0.85
   2 !  232.3   0.7   1.2e-72   7.3e-69       1     250 [.     471     750 ..     471     765 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.34
                 TTSS..TT..TS-TTTT---- CS
     NAGLU_C 179 TlWg..gpe.gelnDYAnkeW 196
                  lW   +p+ ++ ++YA k W
  CCE28450.1 381 DLWSegNPQwQRTKNYAGKRW 401
                 579888888999********9 PP

  == domain 2  score: 232.3 bits;  conditional E-value: 1.2e-72
                 HHHHHHHHHHT....---HHHHHHHHHHHHTTTS---S---SS---GGGS-S-SS---SSTT-----.......S-HHHHHHHHHHHHHHHHH...HTT CS
     NAGLU_C   1 WvkdYakrRyg....kedeeleeAweiLletvYnntkkeaegapesliearPslnakkasskkaekk.......Ydpkdllkawkllleaade...lks 85 
                 +++d+++rRy+    + ++el+eAw++L+++vY+n++++  ++p +++++rP+l+  ++++ +           Ydp+ l+kaw+l+++++ +   l+s
  CCE28450.1 471 YFHDWTTRRYSmtgaTPPRELYEAWQVLRSSVYSNSRSDIPQVPVATYQLRPALSGITNRTGH---FphptalhYDPRVLQKAWQLMFKSSLRqthLWS 566
                 89*********999999*************************************966655432...12346677***************9988889*** PP

                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT..................-HHHHHHHHHHHHHHHHHHHHHHTT-GGGBHHHHHHHHHHSST.T-- CS
     NAGLU_C  86 setyryDlvdvtrqvlanlakelykelvaaykak..................daeafkkaskkllelledlDellatreeflLgkWiedArslak.tee 165
                 s+++++D++d++rq+l+n+++  y+ lv++y++k                   + ++++a+ +ll ll +lD +l+t+ +f+L++W++ Ar++++ +  
  CCE28450.1 567 SPAFQFDFLDLSRQMLSNAFDLRYSGLVRSYHCKiskpskshelravsppkdAKCDVRAAGGSLLGLLWMLDYVLSTNAHFTLQRWTAGARKWGTlSGG 665
                 *********************************************99999965669***************************************6667 PP

                 HHHHHHHHHHHHTTTSSTT..TS-TTTT----BTHHHHTHHHHHHHHHHHHHHHHTT-S---.......HHHHHHHHHT--T---- CS
     NAGLU_C 166 ekelyelnArnqiTlWggpe.gelnDYAnkeWsGLvkdYYlpRWklFvdalaealeegkefdeeelkkklfefeeaWveskkeyps 250
                 ++el+ lnAr+q+T+W + + ++lnDYA+k+WsGLv++YY +RW++Fv++l++a ++++++de++l+k+l +fe +W+  k   + 
  CCE28450.1 666 HEELFALNARSQVTVW-QVNaRDLNDYAAKAWSGLVASYYGERWRIFVNELVRASSRRQKVDERALAKALGRFEADWQGGKGGEEG 750
                 788*************.6677********************************************************987765444 PP

>> NAGLU_N  Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   3.8e-17   2.2e-13       2      81 ..      19     108 ..      18     109 .. 0.94

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 3.8e-17
                 HHHHHHHHHH-GGGGGEEEEE.........--BTTB-EEEEE-SSS.-EEEEESSHHHHHHHHHHHHHHHS--B--T.T--B----SS-- CS
     NAGLU_N   2 avrelleRllpehaskfkfelv........eeksgkdvFeisskgg.kilIrGnsgvalasGlnwYLkyycgvhisw.ngdqlklPavLP 81 
                 ++++l++Rllp+h ++f+f+l+        ++   +d +++ + ++ ki I+G+s +ala+Gl++Y +++++++     ++ +k+P++LP
  CCE28450.1  19 GISALANRLLPGHGDAFEFKLTtahenwsrWNPPVNDNYTVRAGKKrKIRIEGTSLNALARGLRHYANDVLQSDHFFfIDRPIKAPKTLP 108
                 7899***********************9987799********98888**************************9888899********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5780.09
//
Query:       CCE28451.1  [L=451]
Description: related to cytochrome P450 52A12; alkane hydroxylase 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-46  159.2   0.0    6.1e-37  127.4   0.0    2.1  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   4.6e-12   8.2e-08      39     185 ..      90     234 ..      73     265 .. 0.78
   2 !  127.4   0.0   3.4e-41   6.1e-37     209     416 ..     222     435 ..     215     436 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 4.6e-12
                 EEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCS CS
        p450  39 lklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlveklrkkagess 137
                 + + ++++++  ++e++k+vl  k    +  ++ ++++   + f+g ++++++g++w+  R ++ p +      +  e++ ++++ l++ +  +  +  
  CCE28451.1  90 VSFLGRRIIITRDTEHIKAVLTSKL---AHFGKGPQFHRIWEGFLGDSIFTTDGKQWQASRALIRPMFVRE-RVRDLEIFSRWTDTLLRHIPGDGVT-- 182
                 667789999***************5...66667789999999***************************98.447899**********999765544.. PP

                 EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH.....HHHHHHHHHHHHHHHH CS
        p450 138 elditellskaaldvigsilFgarfdlledek.....lselvkaveelsslls 185
                  +d+ +l+ ++aldv ++ l+ga++++l+++        ++ + +++l ++++
  CCE28451.1 183 -VDMCDLFYRMALDVATDFLLGASVGSLDNPFwsfipKRRYRNGIKKLEEFMN 234
                 .6************************999995444444444444444443333 PP

  == domain 2  score: 127.4 bits;  conditional E-value: 3.4e-41
                 HHHHHHHHHHHHHHHHHHHHHCHCHC......SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH CS
        p450 209 lkeavkklkdlldklieerretldsa......kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklre 301
                 +++  kkl+++++++i    +   ++       +++ +fl+++ l++   k     + + ++ +++ +l+aG dTt+stlsw+LyeL ++P + +klr 
  CCE28451.1 222 YRNGIKKLEEFMNPFIVATLKLSPEElerlskFDKDFTFLHHIALMS---K-----DPKVIRDQIMAVLLAGRDTTASTLSWTLYELCRYPATWDKLRA 312
                 45555666666666666665555555555555445666666666664...3.....4589*************************************** PP

                 HHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT......EEE-TT-EEEEEHHHHHT-TTTSS.......STTS--GGG CS
        p450 302 EidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg......ylipkGtevivnlyalhrdpevfp.......nPeeFdpeR 387
                  +  v+g +r+pty+dl+++ yl+ +i EtLRl+p+vp    R++ +d++++g       +    ++++ ++ a++r+ +++p       +P+ + p+R
  CCE28451.1 313 QVLDVVGPSRTPTYEDLKSMRYLNHAIDETLRLYPAVP-YNWRAAVSDTTLPGqpgqpdIVANNKDIILYSTLAMQRRRDLYPpvsenfaDPDIYSPDR 410
                 **************************************.666***********9999766677778899999******99875566666699999**** PP

                 GB-TTSCTESSCTT--TTEEGGGS-TTHH CS
        p450 388 FldekgnskrksfaflPFGaGpRnCiGer 416
                 ++  +     k+ +++PF  GpR+CiG r
  CCE28451.1 411 WEHWTP----KPWQYIPFNGGPRICIGTR 435
                 *99964....8****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3403.72
//
Query:       CCE28452.1  [L=257]
Description: related to glomerulosclerosis protein Mpv17 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-21   75.9   0.1    6.6e-21   74.3   0.1    1.9  1  Mpv17_PMP22  Mpv17 / PMP22 family


Domain annotation for each model (and alignments):
>> Mpv17_PMP22  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.1   3.7e-25   6.6e-21       2      62 .]     191     251 ..     190     251 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 3.7e-25
  Mpv17_PMP22   2 llegksleeikeelkekfwptlkanwkvWppaqlinFyfvPlkfRvlfvnvvslgWntyLS 62 
                  + eg  +  + ++l++ ++ptlkan++vWp++q++nF+++P++f+++fv++++++W++yLS
   CCE28452.1 191 VAEGGGRRAVSHKLRDMYVPTLKANYVVWPAVQIVNFRLMPVQFQLPFVSTIGIAWTAYLS 251
                  57999999****************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2142.74
//
Query:       CCE28453.1  [L=417]
Description: probable phosphoglycerate kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.4e-151  504.7   1.5   1.6e-151  504.6   1.5    1.0  1  PGK          Phosphoglycerate kinase
  ------ inclusion threshold ------
       0.15   11.3   1.9       0.17   11.2   0.5    1.7  2  AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
       0.26   11.9   4.2         15    6.2   0.1    3.0  2  Pyr_redox    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PGK  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  504.6   1.5  2.7e-155  1.6e-151       1     378 []       9     406 ..       9     406 .. 0.94

  Alignments for each domain:
  == domain 1  score: 504.6 bits;  conditional E-value: 2.7e-155
                 GGGS--TT-EEEEEE-----EECTTEES--HHHHHHHHHHHHHHHTT-E.EEEEE--S--TT.S-GGG-SHHHHHHHHHHHTT-EEEESSTTSHHHHHH CS
         PGK   1 vkdldlkgkrvlvRvDfNvplkkegkitddtriraalpTikyllekgak.vvllsHlgrpkg.ekeklslkpvaerLsellgkeVkfvedvvgeeveea 97 
                 ++d++lk+krvl+RvDfNvpl++++kit+++ri  a+pTik+++++gak v+l+sHlgrp+g  ++k+sl+pv+ +L++llgk+V+f++d+vg+eve+ 
  CCE28453.1   9 ITDVNLKDKRVLIRVDFNVPLDENKKITNNQRIVGAIPTIKHAIDHGAKsVILMSHLGRPNGaPNAKYSLQPVVPELEKLLGKSVTFAPDCVGSEVETI 107
                 689**********************************************9**********99667********************************** PP

                 HHT-TTT-EEEES-GGGSTTTT.........TT-H........HHHHHHHHT-SEEEE--GGGTTS--TTTTHHHHCSEEEE-HHHHHHHHHHHHHHHS CS
         PGK  98 iaelkegevllLeNvrfykeEe.........knde........elakklasladvyVnDAFgtahrahaStvgiakvlsaaaGllmekElealskvlen 179
                 +++++ g v+lLeN+rf+ eEe         k  +        +++k l++l+dv++nDAFgtahrah+S+vg+    ++aaG+lm+kEl++++k+le+
  CCE28453.1 108 VNKAEGGAVVLLENLRFHIEEEgsskdkegnK--TkagkaeveAFRKGLTALGDVFINDAFGTAHRAHSSMVGVDLP-QKAAGFLMKKELDYFAKALES 203
                 ******************99985554444430..0444444446******************************955.56******************* PP

                 --SSEEEEEEES-HHHCHHHHHHHTTT-SEEEEETCHHHHHHHH.TT-B-TTSS--GGGHHHHHHHHHHHHHHT-EEE--SEEEEESS.S.STTS.EEE CS
         PGK 180 perplvailGGakvsdkikvienLlekvdkliigGgmantFlka.qgleigkslveedklelakellekakkkgvkillpvDvvvake.e.aekeakvv 275
                 p+rp++ailGGak+sdki++i+nLl+kv++liigGgma+tF k+ +++ ig+sl++e   +++++l+ekakk+gvk++lpvD+v+a++ + ++k++ ++
  CCE28453.1 204 PQRPFLAILGGAKISDKIQLIDNLLDKVNTLIIGGGMAFTFKKVlNNMPIGTSLFDEAGSKMVNNLMEKAKKNGVKVVLPVDFVTADKfDkNAKTGYAT 302
                 ********************************************9******************************************953344448999 PP

                 ECCG--TT-EEEEE-HHHHHHHHHHHCC-SEEEEES-SS-TTSGCCCHHHHHHHHHHHHHCH.TSEEEEESHHHHHHHHHTT-GGGSSEEESSSHHHHH CS
         PGK 276 eveaipedemalDigpktielfaeaikeaktvvwnGpmGvfeiekfakGTkaiakalaeatk.galsivGGgdsaaaveklgladkvshvStGGgAsLe 373
                 +++ ip+++m+lD+g+k+ +lf+e+++ akt++wnGp+Gvfe+e+fakGTk+i++a+ +  + g ++i+GGgd+a++++k+g++dk+shvStGGgAsLe
  CCE28453.1 303 DSDGIPDGWMGLDCGEKSSALFKETVDGAKTILWNGPAGVFEFENFAKGTKSILDAAVKGCEnGKIVIIGGGDTATVAAKYGVEDKLSHVSTGGGASLE 401
                 ********************************************************999766799********************************** PP

                 HHCTS CS
         PGK 374 lLegk 378
                 lLegk
  CCE28453.1 402 LLEGK 406
                 ****8 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.52   3.1e+03      30      39 ..     232     241 ..     228     243 .. 0.83
   2 ?   11.2   0.5   2.8e-05      0.17       8      45 ..     344     382 ..     340     387 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.52
                  EEEEESTSHH CS
  AlaDh_PNT_C  30 kvlviGgGva 39 
                  ++l+iGgG+a
   CCE28453.1 232 NTLIIGGGMA 241
                  689*****98 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 2.8e-05
                  HCSCGCTS.EEETTCEETCB---EEEEESTSHHHHHHHH CS
  AlaDh_PNT_C   8 alekffgg.kgtlaGgvpgvepakvlviGgGvaGlqAia 45 
                  ++e+f +g k +l + v+g e++k+++iGgG   + A++
   CCE28453.1 344 EFENFAKGtKSILDAAVKGCENGKIVIIGGGDTATVAAK 382
                  556665552678899****************99999987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.8    0.0038        23      38      60 ..     261     283 ..     232     300 .. 0.74
   2 ?    6.2   0.1    0.0025        15       1      16 [.     367     382 ..     367     390 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0038
                 SSHHHHHHHHHHHHHTTEEEECS CS
   Pyr_redox  38 lDeeaskilqeklekngievlln 60 
                  + ++ ++l+ek +kng++v+l 
  CCE28453.1 261 AGSKMVNNLMEKAKKNGVKVVLP 283
                 3345567779999999****985 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0025
                 EEEEECSSHHHHHHHH CS
   Pyr_redox   1 kvvvvGgGyiglElAg 16 
                 k+v++GgG+++  +A+
  CCE28453.1 367 KIVIIGGGDTATVAAK 382
                 79*********98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3038.61
//
Query:       CCE28454.1  [L=72]
Description: uncharacterized protein CPUR_01929 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-21   75.3  12.6    3.4e-21   75.0  12.6    1.1  1  DSS1_SEM1  DSS1/SEM1 family


Domain annotation for each model (and alignments):
>> DSS1_SEM1  DSS1/SEM1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0  12.6   1.9e-25   3.4e-21       2      55 ..      16      72 .]      15      72 .] 0.94

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 1.9e-25
                HHHHHHHHHHTTSTTHHHHH----------.....---BESSTTTSCGGCHHHHHHH CS
   DSS1_SEM1  2 ekkklklLeeDDEFEeFpvedwdeeeeeake...ekklWednWDDddveddFskqLr 55
                + +++ +L eDDEFE+Fpv+dw +e++ea++   +++lWe++WDDdd++ddFs qLr
  CCE28454.1 16 KPEQKMVLGEDDEFEDFPVDDWPDEQTEAAQggqTNHLWEESWDDDDTTDDFSVQLR 72
                5678999***************9999999989999*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 577.05
//
Query:       CCE28455.1  [L=660]
Description: uncharacterized protein CPUR_01930 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.6e-121  404.3   0.0     9e-121  403.9   0.0    1.2  1  DUF3808   Protein of unknown function (DUF3808)
  ------ inclusion threshold ------
        0.2   12.4   1.7        6.4    7.6   0.0    4.3  5  TPR_6     Tetratricopeptide repeat
          3    8.6   9.5        1.2    9.9   0.2    4.4  5  TPR_16    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DUF3808  Protein of unknown function (DUF3808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.9   0.0  1.5e-124    9e-121       5     464 ..      39     536 ..      35     562 .. 0.89

  Alignments for each domain:
  == domain 1  score: 403.9 bits;  conditional E-value: 1.5e-124
     DUF3808   5 dlvLndkfeeaeellkeaskeSslhalgrgviafleAvltfepekmkkAsealkeaeklceksrkkaqkneskqnlssdslyepgleaevcyaealLlk 103
                 +l++nd++++a + l+  +++Ss+h+lg +v  f++++l+fe+e m +A+++l ++e+ + ++ k+aqk+   +  s++ +y+pg+e+e++ ae++L++
  CCE28455.1  39 ALIMNDDIDGAWQGLE--RGDSSFHSLGAAVTFFMRSILGFEKEVMAQAATMLSNCETQAWNEYKRAQKYGGDEDVSTSRIYPPGTEYELVRAETQLMS 135
                 689************7..899**************************************************656565569******************* PP

     DUF3808 104 AlLtflseslvefiKgglklRkaYqiykeilkeikklekkkrskt.............eeeeesllseekn..sqaeideflesGvnlgfGilqlviSl 187
                 A++++l+es+ve++K+++klRka++i++ i   + k++    ++t             + +e ++ ++e++  +++ id f++sG n++fG+++l++Sl
  CCE28455.1 136 AVVGVLNESVVEAMKSFYKLRKAFIILDGIIAAEAKAHVGVPNETannsnpdglrssaS-PELNSVHAESEldITDPIDVFIHSGANMCFGLIHLILSL 233
                 ****************************9988777665544444466777889888752.332322222236799************************ PP

     DUF3808 188 lPpailklLsvvGFsGdreeGLrlLweasksrnlraalallaLlfYytgvv.qvldi..d...dg..lkapleeleelLlksrkrfPksalwllfeari 278
                 +Ppa++++LsvvGF+Gdr +G+r+Lw++++++n+++ala + Ll+Yy++ +  +l    d   d    + p++++ elL + r+r+P+s lw ++ear+
  CCE28455.1 234 VPPAFSRILSVVGFRGDRARGVRMLWRSASHDNIHGALAGMFLLAYYNIGTvDILPSpkDydsDAeaVGPPQQKCRELLHELRARYPDSRLWRIEEARL 332
                 ************************************************8650444445515453356899***************************** PP

     DUF3808 279 eslkgnldeAlelleeiieesqselkqvkhlclfelaltlvylheykeaaesfleLlklskwSkalYtYlaaacllelgre..............ekka 363
                 ++  +nl +A+ell+   + +qs++kqv ++  fel++++++++++    ++fl++l+ s+wS  +Y+Yla++  lel+r+              ++ +
  CCE28455.1 333 YANDKNLPRAIELLS---TGKQSAMKQVTAVNHFELGINAMIMQKWALMRDTFLLCLETSDWSPGMYYYLAGCAALELYRDayhddtqadnaehaTEVK 428
                 ***************...478***********************************************************************9997777 PP

     DUF3808 364 eakekaeelfkevpkllqkkag..kslplekFilrKverfkarkkekkselldavlvspvlEliYvwngfsrmskeeleeesvkkleeka....ankes 456
                 + k++aee++++vp+  +k++   ++lple F+ rK ++++ar+    ++l+dav+ sp+lE+ Y+w+g +rm+ +ele  ++++l +++    +    
  CCE28455.1 429 RLKDQAEEYLRKVPHVSGKQRLmaRQLPLEIFAQRKLQKWEARATLLGIDLADAVGSSPALEISYMWSGQKRMGSQELE-LALTHLDWNRctagQ---- 522
                 888*************99988899*******************888*********************************.999999888744321.... PP

     DUF3808 457 e......eeeDdel 464
                 e      +e+Dd +
  CCE28455.1 523 EvieklkTEKDDLA 536
                 22334555566655 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0011       6.4      16      33 .]     305     322 ..     277     322 .. 0.85
   2 ?   -1.8   0.0       1.1   6.7e+03       7      23 ..     330     346 ..     329     348 .. 0.84
   3 ?   -1.4   0.1      0.84     5e+03      16      26 ..     431     441 ..     397     442 .. 0.71
   4 ?   -0.8   0.0      0.54   3.2e+03       5      25 ..     539     561 ..     536     561 .. 0.81
   5 ?   -1.8   0.0       1.1   6.4e+03      11      27 ..     611     627 ..     608     628 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHH-TT- CS
       TPR_6  16 tdkAlealerlikeYPdS 33 
                  +k +e+l +l+ +YPdS
  CCE28455.1 305 QQKCRELLHELRARYPDS 322
                 5799*************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAleal 23 
                 a++y + ++  +A+e+l
  CCE28455.1 330 ARLYANDKNLPRAIELL 346
                 78899977999***998 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.84
                 HHHHHHHHHHH CS
       TPR_6  16 tdkAlealerl 26 
                 +d+A e+l+++
  CCE28455.1 431 KDQAEEYLRKV 441
                 67888888876 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.54
                 HHHHHHHHH..HHHHHHHHHHHH CS
       TPR_6   5 klalsyrkl..gdtdkAlealer 25 
                  +++s + +  g+ d+A+ +l++
  CCE28455.1 539 AIGMSSILQgvGKMDDAVHLLQQ 561
                 578888886689******99996 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHH CS
       TPR_6  11 rklgdtdkAlealerli 27 
                 ++ +++d+  + ler++
  CCE28455.1 611 YRRTKADECQAHLERVR 627
                 444599*******9996 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         2   1.2e+04      38      61 ..      12      35 ..       9      36 .. 0.75
   2 ?    9.9   0.2    0.0002       1.2      18      58 ..     310     347 ..     309     354 .. 0.92
   3 ?   -1.9   0.3      0.91   5.4e+03      55      61 ..     406     412 ..     403     441 .. 0.55
   4 ?   -3.0   0.0       2.1   1.2e+04      24      42 ..     480     498 ..     478     511 .. 0.72
   5 ?    1.4   0.0     0.086   5.2e+02      33      47 ..     581     595 ..     543     617 .. 0.54

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2
      TPR_16 38 lllgdaalrqgrlaeAaalyraal 61
                + ++d++ ++  la+ ++ ++ al
  CCE28455.1 12 NSSADCLKAKESLAKERDHLADAL 35
                567899999999999887776665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0002
      TPR_16  18 aaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                 ++l+++++r+   Pd + ++ + +++++  ++l++A++l+ 
  CCE28455.1 310 ELLHELRARY---PDSRLWRIEEARLYANDKNLPRAIELLS 347
                 7899******...9***********************9975 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.91
      TPR_16  55 alyraal 61 
                 +lyr a+
  CCE28455.1 406 ELYRDAY 412
                 4444444 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 2.1
      TPR_16  24 lkrdpssPdaaeAllllgd 42 
                  ++ +ssP+   +++++g+
  CCE28455.1 480 ADAVGSSPALEISYMWSGQ 498
                 5667788999999999997 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.086
      TPR_16  33 aaeAllllgdaalrq 47 
                  + A ++l+++a++q
  CCE28455.1 581 LPVANYELAVIAWAQ 595
                 444666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.32s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4419.95
//
Query:       CCE28456.1  [L=329]
Description: uncharacterized protein CPUR_01931 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-11   44.7   6.1    1.5e-11   44.7   6.1    2.7  3  FA_hydroxylase  Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.1    0.0044        79      44      93 ..      40      89 ..      32     104 .. 0.71
   2 ?   -0.6   0.1     0.088   1.6e+03      60      88 ..     109     128 ..      92     149 .. 0.42
   3 !   44.7   6.1   8.5e-16   1.5e-11       3     133 .]     150     280 ..     148     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0044
  FA_hydroxylase 44 alrahplealllalllllll.lllgplsalllvlvlaallelliHsglhvs 93
                     +++hple+ l +ll+l ++ +++++l+ ll+ + +  l e l+H g + s
      CCE28456.1 40 VFSHHPLEIHLSGLLVLRVIfWFIPSLVFLLFDIGVPSLAEGLKHGG-RSS 89
                    5689*********7777555055556666666888888888888888.344 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.088
  FA_hydroxylase  60 lllllllgplsalllvlvlaallelliHs 88 
                     ++l++++  +++++++lv+          
      CCE28456.1 109 VFLWMAVEAIVTMAYTLVF---------K 128
                     2333333322222222222.........2 PP

  == domain 3  score: 44.7 bits;  conditional E-value: 8.5e-16
  FA_hydroxylase   3 lallledfveYwvHr.llHrvkllwrrlHkv..HHsseaptalaalrahpleallla.llllllllllg.plsalllvlvlaallelliHsglhv 92 
                     ++l+  ++++Y++Hr +lH ++ l r  H    H +s ap  l  ++ hp+ +++   l+++l+ +++  ++ ++++v++l+++ e+l  sg+  
      CCE28456.1 150 FILVTREVLQYYLHRrVLHGKSGLAR-KHMAyaHATSGAPYSLQVYTDHPIAIFFHRfLPVFLPSVIIRtHMLTYFFVIILTTIEETLAMSGY-- 241
                     678999*************9776666.776643668889999***************8888899999999**********************4.. PP

  FA_hydroxylase  93 slgwllerllatpraHrlHHskneegnfgvllslwDrlfgT 133
                     ++ +    ++  ++   +H+++  ++n+g   +++D+ +gT
      CCE28456.1 242 TFIPG-VVMSGITTRTAIHYASRGSSNYGA-VGVMDWAHGT 280
                     33333.245778888999******9*****.6*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2415.82
//
Query:       CCE28457.1  [L=910]
Description: uncharacterized protein CPUR_01932 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-09   36.9   0.0    1.5e-08   34.6   0.0    1.9  2  Abhydrolase_1  alpha/beta hydrolase fold
    2.4e-06   27.0   0.0    0.00031   20.1   0.0    2.2  2  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   1.7e-12   1.5e-08      25     115 ..     553     639 ..     530     650 .. 0.83
   2 ?   -0.7   0.0     0.098   8.8e+02     206     250 ..     781     863 ..     670     866 .. 0.68

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 1.7e-12
                    HHHT.TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHH CS
  Abhydrolase_1  25 Lakd.gfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvllgaidpaaslie 115
                    La + + ++i++D +Gvg S+p  +   d  +  s  dd+++i++al + k+ +++hS G   ala a++ p+++++ + l a  p++ +++
     CCE28457.1 553 LALTlKLRLITPDRPGVGGSEPYAD---DATTPLSWPDDVYAICQALRITKFSILAHSAGAIYALATALRMPQHIRGRIHLLA--PWIPPSQ 639
                    44455789*****************...5556679*****************************************9877777..5555555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.098
                    C......................................THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSS CS
  Abhydrolase_1 206 e......................................lknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagH 250
                    +                                        +++ p+++ +g+ D  vp ++   l +  ++ +++v++++gH
     CCE28457.1 781 QmtydtrlthaiwelattganpavdllvclerrhtigfrYVDITRPVVIHHGSRDTRVPVENVKWLGKTMRRCEVRVLEGEGH 863
                    44555555555555555555555555555555555554433677799999999999999866665655655547777777777 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.4e-08   0.00031      33     137 ..     560     665 ..     533     721 .. 0.70
   2 !    4.6   0.0    0.0019        17     186     235 ..     819     866 ..     798     868 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.4e-08
  Hydrolase_4  33 avyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkva.glilsaPalkikakl...........k 118
                    ++ D  G G se+   + +   ++ dD+ a++++++     +++ +l+hS G++ al+ +lr p++++ ++ l aP++ + ++            +
   CCE28457.1 560 RLITPDRPGVGGSEPYADDATTPLSWPDDVYAICQALR----ITKFSILAHSAGAIYALATALRMPQHIRgRIHLLAPWIPPSQMNvfggsqtlpptN 653
                  46788999*************************99999....8899************************77779****9887665777764443332 PP

  Hydrolase_4 119 appllklllkllgkllpkl 137
                       +    + +k+l++l
   CCE28457.1 654 -----A--IPTSQKILRHL 665
                  .....2..23333333333 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0019
  Hydrolase_4 186 raakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHell 235
                  r  +it P+ + hG++D+ v+ e+ + l ++++  ++++++ +g  H l+
   CCE28457.1 819 RYVDITRPVVIHHGSRDTRVPVENVKWLGKTMR--RCEVRVLEGEGHGLM 866
                  5668999*************************9..699999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (910 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 5943.22
//
Query:       CCE28458.1  [L=698]
Description: uncharacterized protein CPUR_01933 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-27   93.3   0.0    1.7e-26   92.5   0.0    1.4  1  CwfJ_C_1  Protein similar to CwfJ C-terminus 1
      4e-23   82.2   0.0      4e-23   82.2   0.0    2.2  2  CwfJ_C_2  Protein similar to CwfJ C-terminus 2


Domain annotation for each model (and alignments):
>> CwfJ_C_1  Protein similar to CwfJ C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.0   1.9e-30   1.7e-26       5     122 .]     459     581 ..     456     581 .. 0.91

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 1.9e-30
                 HHHHHHHHH-S----SS-..--SS--S-B-SSEEEE---.S-SSTT-EEEEESS--SSTTSS-HHHHHHHHHHHHHHHHHHHHTT--EEEEEE-..SSS CS
    CwfJ_C_1   5 krikasldsClfClsnpk..lekhlivsignkvYlalpk.gpLssgHvliipieHisallsldeevldeirkfrkalvkmykkqdkdavvfEis..ser 98 
                 +r +++ld C +C  +++  ++ + ++s++ +v+l+lp   ++s g  +i+p+ H+++ll++d+++++eir+f+kal++my++q++d++++E++   +r
  CCE28458.1 459 QRLNRVLDACPLCYHEEQnrQPIAPVISLATRVFLTLPPePEISLGGAVIVPLSHRNNLLECDDDEWEEIRNFMKALTRMYHEQGRDVIFYENAatPHR 557
                 688999*******987651167799************99789999*************************************************77788 PP

                 -----EEEEE--HHHHTTHHHHHH CS
    CwfJ_C_1  99 svHlaiqvipvpksiskkaelyfk 122
                 + H+a+  +p+p s + +a++yfk
  CCE28458.1 558 HLHAAMVAVPIPYSEGATAPAYFK 581
                 88888888999***********97 PP

>> CwfJ_C_2  Protein similar to CwfJ C-terminus 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.7   1.8         2   1.8e+04      71      83 ..      89     101 ..      82     106 .. 0.43
   2 !   82.2   0.0   4.5e-27     4e-23       1      99 []     590     692 ..     590     692 .. 0.96

  Alignments for each domain:
  == domain 1  score: -5.7 bits;  conditional E-value: 2
                 SS------S--H. CS
    CwfJ_C_2  71 wrkpkrqskeeee 83 
                  r+++r+++e+++
  CCE28458.1  89 HRHRRRRENEHHS 101
                 3343333333333 PP

  == domain 2  score: 82.2 bits;  conditional E-value: 4.5e-27
                 TT-SS-S---HHHHH.......SHHHHS-SSS--EEEEETTT-..-EEE----HHHH-TT..HHHHHHHHHTT--TTT.SS------S--H.HHHHHHH CS
    CwfJ_C_2   1 ewsqhkklidfskkr.......afrrslvknlpyfyvqfdykgekgyghviedeerfdlq..FareviaglLdlekrrkwrkpkrqskeeeekrveaFk 90 
                 ew+qhkk+id+ +++       afr+sl+k++pyf+v+f+ +g  g+ghv+ed +r+++   Farev++g+ + e+ +  +k+ ++ k +   rve +k
  CCE28458.1 590 EWAQHKKVIDTGARArdgmgrmAFRKSLAKEMPYFHVWFTLDG--GLGHVVEDADRWPRGdlFAREVLGGIVGAEPGI-AKKQGKWVKGDG--RVEGWK 683
                 8***********8779***************************..*********************************.999899988655..****** PP

                 HHHTTT--X CS
    CwfJ_C_2  91 kawkkyDwT 99 
                 k w+k+DwT
  CCE28458.1 684 KGWRKFDWT 692
                 ********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1142  (0.0636957); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 4586.05
//
Query:       CCE28459.1  [L=119]
Description: uncharacterized protein CPUR_01934 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 933.99
//
Query:       CCE28460.1  [L=126]
Description: uncharacterized protein CPUR_01935 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1011.25
//
Query:       CCE28461.1  [L=76]
Description: uncharacterized protein CPUR_01936 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 575.23
//
Query:       CCE28462.1  [L=270]
Description: uncharacterized protein CPUR_01938 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2143.55
//
Query:       CCE28463.1  [L=47]
Description: uncharacterized protein CPUR_01939 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 387.15
//
Query:       CCE28464.1  [L=252]
Description: uncharacterized protein CPUR_02151 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-44  150.6   0.0    6.5e-44  150.4   0.0    1.1  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4   0.0   3.6e-48   6.5e-44      64     241 ..       4     178 ..       1     179 [. 0.94

  Alignments for each domain:
  == domain 1  score: 150.4 bits;  conditional E-value: 3.6e-48
       RVT_2  64 rLllalaaeeelvvhqldvdsafLnaeldeevyvkqPpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegkli 162
                 + + a+aa ++l +hq+dv+ afL + +++ vyv qP G   d   ++v+ Lnk+l+Glkq+p++W+e+++  L+ lgf++ ++  G++++g    +l+
  CCE28464.1   4 KAIFAIAAASDLELHQMDVKPAFLYGLINDLVYVGQPEGLDDD--TGRVCLLNKALHGLKQSPRIWYETLSAYLATLGFKPLTSDLGVFFKG----NLY 96 
                 6789***********************************9888..9*********************************************9....9** PP

       RVT_2 163 valyvddlliagsdikiledvkkelakkfklkdlgkvskfLGieiaq..eaggiklsladyiakvvkkfelt.daktvatPl 241
                 +a yvddll+ag    ++ ++k  l+k+f+++dlg+ +++LG+ei++   + +i+l++++y +k++++f++   +k+v tP+
  CCE28464.1  97 IANYVDDLLVAGLRLDEIAELKTALSKRFQMEDLGESHFHLGMEIVRdrPNRTIRLNQRAYTQKILREFGMEcRNKKVSTPM 178
                 *********************************************99445789******************73566778887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2029.19
//
Query:       CCE28465.1  [L=119]
Description: uncharacterized protein CPUR_02152 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 970.21
//
Query:       CCE28466.1  [L=589]
Description: uncharacterized protein CPUR_02153 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4480.16
//
Query:       CCE28467.1  [L=392]
Description: uncharacterized protein CPUR_02154 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.93    9.7   3.6        1.5    9.0   1.9    2.2  2  zf-C3HC4_4  zinc finger of C3HC4-type, RING


Domain annotation for each model (and alignments):
>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.9   8.5e-05       1.5      20      42 .]       3      24 ..       1      24 [. 0.88
   2 ?   -1.2   0.0      0.13   2.4e+03      11      18 ..      67      74 ..      64      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 8.5e-05
  zf-C3HC4_4 20 fClsCisslqkepdgeqllCplC 42
                 C sCis++  e+ + ++lC lC
  CCE28467.1  3 PCSSCISAVHGEQGS-KHLCILC 24
                5***********966.5*****9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.13
  zf-C3HC4_4 11 PvsleCGh 18
                Pv l+CG 
  CCE28467.1 67 PVGLKCGL 74
                9*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3020.69
//
Query:       CCE28468.1  [L=483]
Description: uncharacterized protein CPUR_02155 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-21   74.9   0.0    1.6e-20   73.3   0.0    1.7  2  DDE_Tnp_4  DDE superfamily endonuclease
    2.3e-05   24.0   0.1    5.1e-05   22.9   0.1    1.5  1  HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
    0.00027   20.6   0.2     0.0012   18.5   0.2    1.9  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.34     2e+03     114     141 ..     122     149 ..     113     162 .. 0.78
   2 !   73.3   0.0   2.8e-24   1.6e-20       1     158 []     239     400 ..     239     400 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.34
   DDE_Tnp_4 114 asarihvErvigrlkgrfrilrsrlrik 141
                  s   + E+++++ kg f  l + l+ +
  CCE28468.1 122 NSQGTIFEDTFRLSKGIFYRLLQWLQAN 149
                 5667899*********998876676666 PP

  == domain 2  score: 73.3 bits;  conditional E-value: 2.8e-24
   DDE_Tnp_4   1 iDgteipiqrpsnleeraqtysnykkkntlkvlivvdpngkiifvskgypGsvsDkeilensgllkalkeavkpgdvilaDkgFklse.kllvpykk.. 96 
                 iDgt+i    p+     +  + ++k+  + +vl++v+ +g++i+v  g +Gs+ D ++++  + ++   + +++g ++l+D+gF  ++  l++py +  
  CCE28468.1 239 IDGTHIAAHVPEH---LQRRFRSRKGGISHNVLAAVTFSGRFIYVLGGAEGSIGDATLIRIASTMDF--Q-IPKGRFLLGDAGFGNTRrGLVCPYANtr 331
                 8***********7...8889***************************************99988888..3.7899*********97773667***99** PP

   DDE_Tnp_4  97 .......kkkkqlseeevefnraiasarihvErvigrlkgrfril.rsrlriklvekidkivkvccvLhN 158
                        +   +  + e+ +n +++sar++vE+++grlk+r+ il  ++ +++ + +  +i++++ +L N
  CCE28468.1 332 yhlqeyrELDVRPETPEELYNLRHSSARVIVEQAFGRLKRRWAILrTGPPEYS-ILDQTRIIYAATALQN 400
                 ***7764222233445689**************************65666666.99999*******9988 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   8.5e-09   5.1e-05       7      49 ..     163     205 ..     160     206 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 8.5e-09
   HTH_Tnp_4   7 dqllltLvyLRlnltyqdLayrFgvsestvsrifhkwvdlLae 49 
                 ++l+++L  +  + t++  a+rF +s+++v+rifhk++ ++ e
  CCE28468.1 163 QRLMVFLYIMASGETQRNTAHRFRMSQPSVCRIFHKVLSFMVE 205
                 666666666667889999*********************9975 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   2.1e-07    0.0012       5     192 ..     235     377 ..     232     379 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.1e-07
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygy.klhiavdtrsglilsvvit.pgnvhdskglkq..lldelrpr..kgklvlaDaGYasaelldtlee 97 
                 ++ ++D+t++ ++ + + +r+     ++k g+ + ++a  t sg ++ v     g+  d + ++   +   ++++  kg+ +l+DaG++  ++++ l  
  CCE28468.1 235 CIGAIDGTHIAAHVPEHLQRR---FRSRKGGIsHNVLAAVTFSGRFIYVLGGaEGSIGDATLIRIasT---MDFQipKGRFLLGDAGFG--NTRRGLV- 324
                 6889******99877744444...33377888866666666667777777765999999998888544...444445***********8..5555555. PP

   DDE_Tnp_1  98 kgvdyiirlkkntklyrkgaeskrrgrlrkhdrnkiltks..qkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldr 192
                         +  nt                + +r+  ++ +  +++ n                          + ++ R  +E+ F++lkr++ ++r
  CCE28468.1 325 -------CPYANT------------RYHLQEYRELDVRPEtpEELYNL-------------------------RHSSARVIVEQAFGRLKRRWAILR 377
                 .......122222............22222222222222200222333.........................668*****************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3675.89
//
Query:       CCE28469.1  [L=319]
Description: uncharacterized protein CPUR_02156 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00062   20.7   0.4     0.0013   19.7   0.4    1.5  1  Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
  ------ inclusion threshold ------
      0.038   14.4   0.2      0.083   13.3   0.0    1.6  2  Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.4   1.5e-07    0.0013       2      90 ..      20     111 ..      19     113 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.5e-07
  Myb_DNA-bind_3   2 Wspeeekilvdllveqvkkgnr.iekktfk....keawkeileefnaktgakytkkqlknrlkklrkeyklvkellersgfsWDpttktvtAdd 90 
                     W+++e   ++  l ++ ++g    +   f     k+a + + e+f ++   +y  + l++++ ++r++y++ k++ + sg +W++  k +t +d
      CCE28469.1  20 WTSAEVFAFIGFLNTERNEGALrNTTAKFMapilKKASNFMSETFPQRS-WRY-DTTLRSQFRRIRDDYRIFKNISDASGTEWNEADKCFTVSD 111
                     8888888888888888888866222333432222556666666666666.566.578*******************************999776 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   9.2e-06     0.083       2      82 ..      18     101 ..      17     110 .. 0.83
   2 ?   -3.3   0.0       1.4   1.2e+04      30      43 ..     282     295 ..     272     303 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.2e-06
                     SSS-HHHHHHHHHHHHH..HHHHHHH..SS--HHHHHHHHHHHHHHC--...--HHHHHHHHHHHHHHHHCSSSSSS----S-- CS
  Myb_DNA-bind_4   2 dkWteeetklLieawgerilelrfqergkkrnkklWeevaeamaergyk...rspeqCkeKienLkkrYkkekerekgsgsswp 82 
                     ++Wt++e+ ++i + +++  e  +++ + k  + + ++ ++ m+e   +   r ++ +++ ++ ++ +Y+  k+ +  sg++w+
      CCE28469.1  18 RQWTSAEVFAFIGFLNTERNEGALRNTTAKFMAPILKKASNFMSETFPQrswRYDTTLRSQFRRIRDDYRIFKNISDASGTEWN 101
                     58*************99667777777445555559999999999986652236788*******************999999996 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.4
                     SS--HHHHHHHHHH CS
  Myb_DNA-bind_4  30 kkrnkklWeevaea 43 
                      +rn+  W ++++ 
      CCE28469.1 282 DQRNARFWTSIKST 295
                     56677778777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2345.66
//
Query:       CCE28470.1  [L=573]
Description: uncharacterized protein CPUR_02157 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3949.68
//
Query:       CCE28471.1  [L=136]
Description: uncharacterized protein CPUR_02158 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.02   14.5   0.1      0.026   14.2   0.1    1.2  1  Phage_tail_NK  Sf6-type phage tail needle knob or tip of some


Domain annotation for each model (and alignments):
>> Phage_tail_NK  Sf6-type phage tail needle knob or tip of some Caudovirales
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.5e-06     0.026      49     101 ..      55     105 ..      48     128 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.5e-06
                    E-SS-EEHHHHHTTS--SBS-STTTEETTTTEE---SSS-.-EEEEEEEEEE-- CS
  Phage_tail_NK  49 iptaptnlvsllktltpssgtlapffdtvnnkmvvfnenk.tlffklsivgtwp 101
                    i ta t  vs+l ++t ssgt +p      +   v +en  tl + l ++   p
     CCE28471.1  55 ISTAQTTHVSILLSITASSGTRSPVARISADDPSVADENAdTLNLDLVVL---P 105
                    89***********************9999999888888852666666543...4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 973.68
//
Query:       CCE28472.1  [L=883]
Description: uncharacterized protein CPUR_02159 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 6262.89
//
Query:       CCE28473.1  [L=356]
Description: uncharacterized protein CPUR_02160 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-05   23.0   0.7    0.00012   21.8   0.1    2.0  2  gag_pre-integrs  GAG-pre-integrase domain


Domain annotation for each model (and alignments):
>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.42   7.6e+03      57      63 ..     190     196 ..     181     197 .. 0.77
   2 !   21.8   0.1   6.8e-09   0.00012      24      45 ..     294     315 ..     266     327 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.42
  gag_pre-integrs  57 evCeaCq 63 
                      ++C++C 
       CCE28473.1 190 PFCDHCK 196
                      6899997 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 6.8e-09
  gag_pre-integrs  24 inlWHrRLGHpsfsrlkkLfkk 45 
                      +  WH R+GH+++++lkkL+k+
       CCE28473.1 294 LASWHARMGHLGEDNLKKLVKH 315
                      556*****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2700.15
//
Query:       CCE28474.1  [L=189]
Description: uncharacterized protein CPUR_02161 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1387.65
//
Query:       CCE28475.1  [L=136]
Description: uncharacterized protein CPUR_02162 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 991.83
//
Query:       CCE28476.1  [L=562]
Description: probable phosphoprotein phosphatase 3-alpha catalytic chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-36  127.1   0.0    2.5e-36  126.1   0.0    1.5  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.0   1.4e-40   2.5e-36       2     203 ..     122     322 ..     121     323 .. 0.94

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 1.4e-40
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHH.TTESEEEEESTSSSSS..HHHHHHHHHHHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllre.ekpdlvllaGDlvdrg..dlekellellaalvkypipvylllGNHe........gfeeellnkygyl 88 
                  +i+v+gD+H     gq++dl+kl++   ++ e ++l+l  GD+vdrg  ++e+ +l+l++ +++yp+ ++ll+GNHe        +f+ e+++ky   
   CCE28476.1 122 PITVCGDVH-----GQYYDLMKLFEVGGDPaETRYLFL--GDYVDRGyfSIEC-VLYLWCLKIHYPDSLWLLRGNHEcrhltdyfTFKLECKHKYS-- 209
                  79*******.....**********9884444799****..*******777777.7777*********************99999999999999999.. PP

                  HHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHH.HHHHTTCSEEEEEESSESSCSSSCSCCH CS
  Metallophos  89 gifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkd.lekrekadwvivlgHsplyrgsgylfgd 181
                       +++ + e f  lpla+ +++  ++l++hGg spel ++ld+l+++n++ e+p+ g   d++++d le+++  ++   + H ++  g++y f++
   CCE28476.1 210 ---ETVYNACMESFCSLPLAAVMNK--QFLCIHGGlSPEL-HTLDDLRTINRFSEPPTTGlmcDLLWADpLEDFGAEKTSDYFLHNNVR-GCSYFFSY 300
                  ...7889******************..********88888.************************************************.******** PP

                  HHHHHHHHHTTESEEEEESSSS CS
  Metallophos 182 ealedllkkygvdlvisGHtHv 203
                  +a++ +l+k+++  +i++H+ +
   CCE28476.1 301 PAACAFLEKNNLLSIIRAHEAQ 322
                  *******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4000.63
//
Query:       CCE28477.1  [L=292]
Description: related to sorbitol utilization protein sou1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-54  184.4   5.9    5.1e-54  183.3   5.9    1.5  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.4e-32  111.1   8.6    4.1e-31  108.0   8.6    1.9  1  adh_short     short chain dehydrogenase
    3.1e-06   27.2   0.8    3.1e-06   27.2   0.8    1.5  2  KR            KR domain
  ------ inclusion threshold ------
      0.012   15.6   1.4      0.014   15.3   0.5    1.6  2  3HCDH_N       3-hydroxyacyl-CoA dehydrogenase, NAD binding do
      0.012   15.0   0.1      0.017   14.5   0.1    1.4  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
      0.041   13.9   0.0      0.048   13.7   0.0    1.3  1  SBDS_C        SBDS protein C-terminal domain
      0.087   12.9   0.2       0.17   11.9   0.2    1.5  1  Mrr_cat       Restriction endonuclease


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.3   5.9     2e-57   5.1e-54       1     233 [.      38     289 ..      38     290 .. 0.96

  Alignments for each domain:
  == domain 1  score: 183.3 bits;  conditional E-value: 2e-57
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..vlecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpfletsre 93 
                   Ga  gIG a+A+a+ae+Ga+v++++ ++++  k++e++++ +g +  +++++V + e+ve+++ ++v++f g+lDi+v n gi+ + +g f++ + e
    CCE28477.1  38 GAGAGIGLAAAQAFAEAGANVAIWYNSNKQaLKEAENIEKTYGVKckAYQVNVISAEAVEKAITDIVKEFnGRLDIFVANSGITWE-EGAFIDGKVE 133
                   8889**************************99***********88546**************************************.********** PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSC.................CEEEEEEEGGGTSB.STTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeg.................gsivnlssvgaerv.vpnyn.aygaaKaalealtrylAvelgpkgiRvNavsp 171
                     +++++vn+ +++ +ak a  +++++                 gs ++++s+++++v +p+ + +y+ +Kaa+++++++lAve+     RvN+vsp
    CCE28477.1 134 TARKVMAVNVDGVMWCAKSAGAHFRRQkkegttldgkplegflaGSFIATASMSGSIVnIPQLQaVYNGSKAAVIHFCKSLAVEWTG-FARVNTVSP 229
                   **********************777666788999*9**************999888776999999**********************.9******** PP

                   --BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 172 gpikTlaasgikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   g+ikT++++ ++  +e++e++++++p+gr g ++e    +l+Lasd+asy+tG +++vDgG+
    CCE28477.1 230 GYIKTDISNFAP--KEMKEQWKNKTPMGREGLVSELKGSYLYLASDAASYTTGLDMIVDGGY 289
                   *******99998..9**********************************************9 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   8.6   1.6e-34   4.1e-31       2     189 ..      33     239 ..      32     245 .. 0.88

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 1.6e-34
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---S.S--SSGGGCS CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGi.tgsgpfsels 97 
                 +++v Ga++GIG+a a+++a++Ga+v++  +s++++ + a++++++ g k  a+qv+v ++e+ve+++ ++vk++ g+ld++v+N Gi  + g+f + +
  CCE28477.1  33 TAIVSGAGAGIGLAAAQAFAEAGANVAIWYNSNKQALKEAENIEKTyGVKCKAYQVNVISAEAVEKAITDIVKEFnGRLDIFVANSGItWEEGAFIDGK 131
                 79**************************6666677778889999999*****************************************5557899**** PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHH...............HCTTEEEEEEEEGGG..TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE CS
   adh_short  98 eeewervievNltgvflltravlpaml...............kqssGrIvnvsSvag..kvpvagvaaYsAsKaavagltrslakelaptgirvnavaP 179
                  e+ ++v++vN+ gv+++++++  ++                   +G+ + ++S+ g   +    +a+Y  sKaav+++ +sla e+     rvn+v P
  CCE28477.1 132 VETARKVMAVNVDGVMWCAKSAGAHFRrqkkegttldgkpleGFLAGSFIATASMSGsiVNIPQLQAVYNGSKAAVIHFCKSLAVEWTGF-ARVNTVSP 229
                 *************************9977666666655444333479**********6444556789********************998.9******* PP

                 SSBSSHHHHH CS
   adh_short 180 GlvdTdmake 189
                 G+++Td+ + 
  CCE28477.1 230 GYIKTDISNF 239
                 ******9875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.8   1.2e-09   3.1e-06       3     117 ..      34     147 ..      32     155 .. 0.81
   2 ?   -3.1   0.1       2.4   6.2e+03     131     147 ..     180     196 ..     177     211 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.2e-09
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE----.-----TT CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaee.ppikGvihaAgv.lrdklle 98 
                  ++ G+  g+Gl+ a+  ae ga+  +    +++a +    + +++e++ g++++++++ v +++ave+++++i +e+ +++   +   g+  +++++ 
  CCE28477.1  34 AIVSGAGAGIGLAAAQAFAEAGANVAIWYNSNKQALK----EAENIEKTyGVKCKAYQVNVISAEAVEKAITDIVKEFnGRLDIFVANSGItWEEGAFI 128
                 689*******************876665555524333....344555544****************************888987666666515799*** PP

                 T--HHHHHHHHTTTTHHHH CS
          KR  99 emtaedleqvlapKvkGaw 117
                 + + e+ ++v+a  v+G+ 
  CCE28477.1 129 DGKVETARKVMAVNVDGVM 147
                 ***************9975 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.4
                 EEEEEEHHHHH--TT-H CS
          KR 131 fvlfSSiagllgsagqa 147
                 f+ ++S++g + +  q 
  CCE28477.1 180 FIATASMSGSIVNIPQL 196
                 88889999888776553 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.5   5.4e-06     0.014       4      65 ..      36     101 ..      33     117 .. 0.77
   2 ?   -3.7   0.0       3.6   9.3e+03     115     138 ..     189     211 ..     180     212 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.4e-06
                 EE--SC.CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-...HHHHCCCHH CS
     3HCDH_N   4 viGaGt.mGagiaavfasagleVvlvdiseealekalekieksleklvekgklk...eeeveaala 65 
                 v GaG  +G   a++fa+ag +V +   s++++ k +e+iek++    ++ +++   +e ve+a++
  CCE28477.1  36 VSGAGAgIGLAAAQAFAEAGANVAIWYNSNKQALKEAENIEKTYGVKCKAYQVNvisAEAVEKAIT 101
                 55777559**********************************877666666555333555555444 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.6
                 SSS-HHHHCCCSSSGGGEEEEEE- CS
     3HCDH_N 115 SslsiselaealkrperviglHFf 138
                 S ++i +l++ + + ++ +++HF 
  CCE28477.1 189 SIVNIPQLQA-VYNGSKAAVIHFC 211
                 4444555544.4556688888985 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   6.8e-06     0.017      23      77 ..      15      73 ..       1     103 [. 0.75

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.8e-06
                  C...HTTCCGSBS-GTTSEEEEES-SH.HHHHHHHHHHHTT-EEEEESSSHHHHHCHHH CS
  2-Hacid_dh_C 23 w...ksekallgkelsgktvGiiGlGr.IGqavakrlkafgmkviaydrskkkeeeeee 77
                  +   k ++ l+  +l+g+t  + G+G+ IG a+a+ +++ g++v ++  s+k+  +e+e
    CCE28477.1 15 MevpKGDRVLPMFSLKGRTAIVSGAGAgIGLAAAQAFAEAGANVAIWYNSNKQALKEAE 73
                  24345566778889************77****************999888776653333 PP

>> SBDS_C  SBDS protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.9e-05     0.048      29      89 ..      49     109 ..      45     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.9e-05
                 HHHHHTT----TTS-CCCCHHHHHHHHTTTS--EE-EEEEEEEE-...CCCHHHHHHHHHH CS
      SBDS_C  29 kalkelgtsvktnksaksQalevikaLiqeipiqrarmrlritcptsikdkilklieqves 89 
                 +a  e+g +v +  ++++Qal+  + +++ + ++ +  +++++ ++++++ i+ ++++ + 
  CCE28477.1  49 QAFAEAGANVAIWYNSNKQALKEAENIEKTYGVKCKAYQVNVISAEAVEKAITDIVKEFNG 109
                 6788999**************************************9999999988888765 PP

>> Mrr_cat  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   6.7e-05      0.17      41      90 ..      70     121 ..      42     144 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.7e-05
                 EETTEEEEEEEEEEE--T.S-B-HHHHHHHHHHCTTS...SEEEEEESS-B- CS
     Mrr_cat  41 kkdplgserilvqaKryk.nkvgvkeVqeligalkkr.gadkgifvttsdft 90 
                 k++++ ++++ v +K y+ n +++++V++ i  + k+ + +  ifv +s++t
  CCE28477.1  70 KEAENIEKTYGVKCKAYQvNVISAEAVEKAITDIVKEfNGRLDIFVANSGIT 121
                 455555569********9899***********99985489999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2268.86
//
Query:       CCE28478.1  [L=250]
Description: probable trimethyllysine dioxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-20   72.8   0.1      5e-20   72.4   0.1    1.1  1  TauD        Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
       0.12   12.6   0.0       0.19   12.0   0.0    1.3  1  FLgD_tudor  FlgD Tudor-like domain


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.1   5.6e-24     5e-20      30     225 ..      12     201 ..       5     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 5.6e-24
        TauD  30 lrellaeygvvvfrgfplspeqqlefarrfGplygtpgrgtntkygevldvssvyesadianlayttllwHtDlsylesppgiqlLhcleapa...... 122
                 l +l+  yg+v++++ p +pe+++e+ +++Gp+++t        yg+ +d+  + ++ad a+++ + +  HtD +y+ +p g+q +h l + +      
  CCE28478.1  12 LTNLIKIYGFVFVTDSPKTPEATEELLKAIGPIRNTH-------YGGFYDFVPDLAKADTAYTNQALAA-HTDTTYFTDPVGLQAFHLLSHTPppnkte 102
                 6788899********999************9888888.......7777774444455555555555555.*******************996669**** PP

        TauD 123 .....tGGetpfvDgraaynaLpeelpellegltavrvyyhyrggglrteqelpavdkhprtghpvvrthpvltgrkallvn..p...pfatrieglgt 211
                       GG++++vDg++a   +++++p+++e l++vr + h  g        +p+v+  p +  pvv+  p  ++ +   +n  +   p+++++     
  CCE28478.1 103 eegasLGGQSLLVDGFHACAIMKQKHPAEYELLRKVRIPWHASG--------NPDVAITPDRAYPVVEGPPH-RVHRIRWNNddRgcvPMHAPV----- 187
                 9888888*************************************........77777777777777776662.333333333221222333333..... PP

        TauD 212 peskelldaleell 225
                 +e +++ +  +e+l
  CCE28478.1 188 DEWYDAARKWDEIL 201
                 55555555555555 PP

>> FLgD_tudor  FlgD Tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.1e-05      0.19       7      47 ..     106     239 ..     104     245 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
                 TCTTTSEEEEE........................................................................................ CS
                 xxxxxxxxxxx........................................................................................ RF
  FLgD_tudor   7 asLiGkeVlvp........................................................................................ 17 
                 asL G++ lv+                                                                                        
  CCE28478.1 106 ASLGGQSLLVDgfhacaimkqkhpaeyellrkvripwhasgnpdvaitpdraypvvegpphrvhrirwnnddrgcvpmhapvdewydaarkwdeilrhp 204
                 566677777777777777777777777777777777999999999999999999999999999999999999999999999999999999999999999 PP

                 ......TEEEEE-EEEEEEEEEEEE.ETTEEEEEET CS
                 ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  FLgD_tudor  18 ......GtsvaattlvygtVdsVslstggglmLnLg 47 
                       G s  a++l++++V+sV + t+ +++  L+
  CCE28478.1 205 snflttGASSMAEALSRANVESVAV-TSIETIFILA 239
                 99999999****************9.8777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1949.10
//
Query:       CCE28479.1  [L=753]
Description: related to ubiquitin-specific proteinase UBP1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-35  122.0   0.0    6.4e-34  117.6   0.0    2.5  1  UCH       Ubiquitin carboxyl-terminal hydrolase
    3.4e-07   30.2   0.0    8.7e-07   28.8   0.0    1.7  1  UCH_1     Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0   7.1e-38   6.4e-34       2     257 .]     152     633 ..     151     633 .. 0.76

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 7.1e-38
                 EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH...SH-CCEE--HHHHHHHHHHSGGGTSSST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH   2 GlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell...kskskavsPkklkktlsklaksfsgykq 97 
                 Gl N  n+Cy ns+lQ L+s+p++ +yl  + ++ + +++++             +a+ l++l+++l+   ++ +++ +P +l+k+       +s+++q
  CCE28479.1 152 GLGNRDNSCYQNSILQGLASLPSFHRYLSACVQTIHAPQQAN------------DVAHTLRTLISDLNdvgNNGRTIWTP-SLLKC-------MSTWTQ 230
                 99****************************866665555553............3999**********885444444455.44444.......4799** PP

                 CEHHHHHHHHHHHHHHHHCC..........................................HCCCHHHHHHCCCTTSHHHHHH-EEEEE......... CS
                 xxxxxxxxxxxxxxxxxxxx..........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx......... RF
         UCH  98 qDaqEflaflLdqlhedlnr..........................................evaeekwkkhlkrndslitdlfegqlks......... 145
                 qDaqE+++ +Ld++++++ r                                          +                          +         
  CCE28479.1 231 QDAQEYFSKVLDDIDKSVARaveskrrqtglgsdklkddatasqhsddsgyqsaspsaeclaK--------------------------Kslrnplegl 303
                 ********************7777777777777777666655544444444443333333330..........................0333444446 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
         UCH 146 ................................................................................................... 145
                                                                                                                    
  CCE28479.1 304 laqrvacvqcgyseglsmipfncltlslgldkhhhdlyerldayskveviegvecpkctllmaqkfllklveklkengstteqikepvrrlmavelale 402
                 666666677777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                 ...........................EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-B............. CS
                 ...........................xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............. RF
         UCH 146 ...........................klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeekkkkteekkk............. 201
                                            ++ + r P+ L ih++R  ++ +     K++ +++fp++ldl + +  +++++ +++ +             
  CCE28479.1 403 edhfddktikeeckissqckvsttktkQIVIARPPQSLAIHVNRSVFDPRtfdMMKNSAPLSFPQTLDLGPWCL-GSAEDIQKRLSgesgageerwqld 500
                 7777777777777777777777777899*******************998999*****************7666.333333444445677777777777 PP

                 ...................EEEEEEEEEESCTTSEEEEEEEECTTTTE................................................... CS
                 ...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................... RF
         UCH 202 ...................YeLiavvvHsGslssGHYvayiknekngk................................................... 230
                                    YeL a v H+G +++GHY++y++ ++                                                      
  CCE28479.1 501 pessmiagdlnpsrlagpiYELRAAVTHYGRHENGHYICYRRYPEADAlfedtaqapipdevtdnnndddddddgnnsdnkkkenspvqdqkpqvqapp 599
                 7777777777777777777********************99955444477777788888888888899999999999********************** PP

                 .....EEEEETTEEEEE-HHCCCTT...CEEEEEE CS
                 .....xxxxxxxxxxxxxxxxxxxx...xxxxxxx RF
         UCH 231 .....WykydDetvkevkeeeevls...sayiLfY 257
                      W++++D++v+e++ee +vls    +++LfY
  CCE28479.1 600 rsnrgWWRLSDHNVSEIEEE-SVLSlspGVFMLFY 633
                 ******************88.899999999****9 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   9.7e-11   8.7e-07       1     301 [.     151     546 ..     151     566 .. 0.59

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 9.7e-11
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplrnlalshlak..eckkehcLlcElgflf.dmldkak.glncqasnFlralssipeasalglileee.eetekss 94 
                 +GL n+ + +Y Ns+LQ l+ +p + + + +++++  + ++ + ++  l  l+ d  d ++ g+++ +  +l+++s++ +++a + + ++  ++     
  CCE28479.1 151 AGLGNRDNSCYQNSILQGLASLPSFHRYLSACVQTihAPQQANDVAHTLRTLIsDLNDVGNnGRTIWTPSLLKCMSTWTQQDAQEYF-SKVlDD----I 244
                 79*********************999988888888755778899*******9956666666688****************9999998.433233....2 PP

                 xxxxxxxxxx..xxxxx.xxxxxxxxxxxxxxx.........................................................xxxxxxxxx RF
       UCH_1  95 aislssliqs..fnrfl.ldqlekelketkkns.........................................................seeesaieq 133
                 ++s+++ ++s   ++ l  d+l+++++ ++++                                                          +++++  e 
  CCE28479.1 245 DKSVARAVESkrRQTGLgSDKLKDDATASQHSDdsgyqsaspsaeclakkslrnplegllaqrvacvqcgyseglsmipfncltlslgldKHHHDLYE- 342
                 22333333322234444155666665555544478888888888876664444444444444444444555555555555555555555422222222. PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................xxxx.........xxxxxxxxxxxxxxxxx RF
       UCH_1 134 llgtkaettirclkCgseksrksstlvldlkyPk...................................psne.........kkeakvtfasilkssle 188
                                                  +                                   +  +         +    + ++  l++   
  CCE28479.1 343 ---------------------------------RldayskveviegvecpkctllmaqkfllklveklkE--NgstteqikePVRRLMAVELALEEDHF 406
                 .................................0222333333333333333333333333333332321..033444442222222333444444444 PP

                 xxxxxxxxxxxx.xxxxxxxxxxxxx..xxxxxxxxxxxxx.xxx.xxxxxxx.......................xxxxxxxxxxxxxxxxxx..... RF
       UCH_1 189 rekttrawCekC.kryqpteqrktvk..nlPpvLalnakle.eee.elelwkt.......................knwlpleiklsldedknl..... 254
                  +kt++  C++  + + +t+++k++   + P+ La++++++  ++ +++++k+                       +                +     
  CCE28479.1 407 DDKTIKEECKISsQCKVSTTKTKQIViaRPPQSLAIHVNRSvFDPrTFDMMKNsaplsfpqtldlgpwclgsaediQ----------------Krlsge 489
                 4899999997654333333333333355***********99888636666666777777777777777776655442................033333 PP

                 .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 255 .............eeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaek 301
                              +  +    + + ++    +YeL++ v h g ++ +gh++++ + +e 
  CCE28479.1 490 sgageerwqldpeS--SMIAGDLNPSRLAGPIYELRAAVTHYGRHE-NGHYICYRRYPEA 546
                 33333445554321..2222222334556789***********665.******9997554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 5154.42
//
Query:       CCE28480.1  [L=432]
Description: related to triose phosphate/3-phosphoglycerate/phosphate translocator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-26   92.1  22.8    4.9e-26   91.7  22.8    1.1  1  TPT       Triose-phosphate Transporter family
     0.0065   15.7  23.2      0.012   14.9  23.2    1.4  1  UAA       UAA transporter family
  ------ inclusion threshold ------
        3.9    7.6   7.6         19    5.5   0.1    3.5  4  CbtB      Probable cobalt transporter subunit (CbtB)


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7  22.8   8.2e-30   4.9e-26       2     290 .]      68     358 ..      67     358 .. 0.84

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 8.2e-30
         TPT   2 klgllfllWYllnvvfnilnKkilnvf..pyPltvsavqllvgsvlilvlwal..glkkrpkisse...flkailplalvktlghvlavvslskvaVSf 93 
                 ++++++llW +++ ++ ++nK ++ +    +P+++++ +l+  ++ + +l ++   l +r+kis +   ++++ilp++++   + v ++v     +V f
  CCE28480.1  68 NTAFYILLWIFMSNCTILFNKWLIDTKgfRFPILLTCWHLVYATIATQILARTttLLDSRKKISLTprlYCRTILPIGIFYSGSLVCSNVVYLYLSVPF 166
                 5789*******************9764349****************9999877545677889988778999**************************** PP

         TPT  94 thtvKasePiFtvilsrlllgeklsllvylsLlpivgGvalasvtElsFnligfisAlisnltfslrnifsKkllkklkdldalnlfaiitilslllll 192
                  +++Ka++P+     s      +++l+ +l +l iv+Gvalasv E++F ligf+  +   +++++r i+   ll++    d +++     +++l ++ 
  CCE28480.1 167 IQMLKAAAPVAVLFTSWAWKVAEPNLASFLNVLWIVAGVALASVGEIHFSLIGFLYQMGGIVFEAIRIIMIQVLLSG----DGMKMDP---LVGLYYFA 258
                 **********77777777777889999*******************************************9999999....3444333...34556666 PP

         TPT 193 Pvallvegvlktpsllkstk.vslkevll.llllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflY 289
                 Pv  +++ ++  ps l + + ++ ++v + +lll++ + +l n+++  ++ r+s +  ++    K ++ I +s+l+ +++++++++iG a+a++G   Y
  CCE28480.1 259 PVCAIMNLLVALPSELPNFTwAAASAVGFdMLLLNASIAFLLNVTSVFLIGRTSGLVMTLTGIFKNILLILVSILIWNTKITFMQTIGYAIALAGLTYY 357
                 6666666666666655555423334443313455666677889*****************************************************999 PP

         TPT 290 s 290
                 s
  CCE28480.1 358 S 358
                 7 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9  23.2     2e-06     0.012       6     300 ..      74     359 ..      69     361 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2e-06
         UAA   6 vslvfvgccsnvvllElivkeepkafgnlltfvq..flfvalegllesid...ilkkrkiPlktYv....ilvalffitsvlnnealkydisvPvhiif 95 
                 ++ +f++ c+   +   ++ +++ +f +llt      +++a++ l  + +    +kk     + Y+     + ++  ++ v++n +  y +svP+  ++
  CCE28480.1  74 LLWIFMSNCTI-LFNKWLIDTKGFRFPILLTCWHlvYATIATQILARTTTlldSRKKISLTPRLYCrtilPIGIFYSGSLVCSNVVYLY-LSVPFIQML 170
                 55566666654.44555666678888888888774433444444433333433244444444555511105667888999*********.********* PP

         UAA  96 rssklipvmilGililgkrYsllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvlallldavlglvqeklykkygkhskealfyshll 194
                 +++  ++v+++++ +     +l  +l vl +++Gv +++             +  ++l+G++  ++ ++++a+  ++ + l +  g++ +  +   ++ 
  CCE28480.1 171 KAAAPVAVLFTSWAWKVAEPNLASFLNVLWIVAGVALASV-----------GEIHFSLIGFLYQMGGIVFEAIRIIMIQVLLSGDGMKMDPLVGLYYFA 258
                 **************************************99...........346899***************************999999666555555 PP

         UAA 195 slplfl...llqgellsavkflsesedvallslpsklfylllnvltqyvcikgVlilisefgaltvtlvltlRKfvslllSillFknpltlqhlvgtll 290
                 ++  ++   +   + l++++ +++s+           + ll  +++  + + +V+ li +++ l++tl      ++ +l+Sil+++ ++t+ + +g ++
  CCE28480.1 259 PVCAIMnllVALPSELPNFTWAAASAVGFD-------MLLLNASIAFLLNVTSVF-LIGRTSGLVMTLTGIFKNILLILVSILIWNTKITFMQTIGYAI 349
                 555555223555566666666666665553.......455555666667788887.6888999************************************ PP

         UAA 291 Vflglllysy 300
                  + gl +ys+
  CCE28480.1 350 ALAGLTYYSL 359
                 *****99986 PP

>> CbtB  Probable cobalt transporter subunit (CbtB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.38   2.3e+03       8      21 ..     196     209 ..     190     216 .. 0.82
   2 ?   -3.3   0.1       1.7     1e+04      11      28 ..     292     309 ..     288     311 .. 0.71
   3 ?    5.5   0.1    0.0032        19      10      32 ..     341     364 ..     335     367 .. 0.81
   4 ?    5.0   0.1    0.0045        27       3      29 ..     389     415 ..     387     420 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.38
        CbtB   8 qrllqlvaAllLGl 21 
                   +l++va+++L+ 
  CCE28480.1 196 LNVLWIVAGVALAS 209
                 57899999999986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.7
        CbtB  11 lqlvaAllLGlllvylvg 28 
                 l +  A+lL +  v+l+g
  CCE28480.1 292 LNASIAFLLNVTSVFLIG 309
                 556677888777777776 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0032
        CbtB  10 llqlva.AllLGlllvylvgfsqa 32 
                 ++q+++ A++L+ l++y +g++q+
  CCE28480.1 341 FMQTIGyAIALAGLTYYSLGYDQI 364
                 566665499*************97 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.0045
        CbtB   3 ssasaqrllqlvaAllLGlllvylvgf 29 
                 ssa a+r   l++Al+LG l v+++  
  CCE28480.1 389 SSALATRRCILMTALILGGLFVFVSAL 415
                 7888999999*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3195.00
//
Query:       CCE28481.1  [L=691]
Description: uncharacterized protein CPUR_02168 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-25   88.8   0.1    7.9e-25   87.5   0.1    1.7  1  COMPASS-Shg1  COMPASS (Complex proteins associated with Set1p


Domain annotation for each model (and alignments):
>> COMPASS-Shg1  COMPASS (Complex proteins associated with Set1p) component shg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.1   4.4e-29   7.9e-25       1     101 [.      41     141 ..      41     142 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 4.4e-29
  COMPASS-Shg1   1 eLveefKkkGeFDklRkeiledfkeseaeqnlrkkveeivesevkkdp.sllfknrgkaaaliegeidrsdvykkleegvdrivdqdlqeepklrei 96 
                   +L+++fKk G +D++Rk+++++f +s+ e++++k++ e++e+ev+++p +ll+ +r+kaaali+g+++rs+vy+k+e  + +++d d+ +e+++rei
    CCE28481.1  41 SLAHSFKKGGAYDSVRKQVWDKFAASDYEAQVTKAILEVAEKEVERNPlQLLTLDRRKAAALIDGALERSGVYQKAEDVIGQLIDLDA-IEEQIREI 136
                   599************************************************************************************9.5******* PP

  COMPASS-Shg1  97 ikeei 101
                   +++ei
    CCE28481.1 137 RRAEI 141
                   ***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1974  (0.110101); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                       188  (0.0104858); expected 17.9 (0.001)
Passed Fwd filter:                        60  (0.00334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.71u 0.33s 00:00:02.04 Elapsed: 00:00:00.56
# Mc/sec: 3701.78
//
Query:       CCE28482.1  [L=380]
Description: probable endoglucanase IV precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-65  219.5   0.0    6.6e-65  218.9   0.0    1.2  1  Glyco_hydro_61  Glycosyl hydrolase family 61
    2.7e-14   52.8  14.2    7.5e-14   51.4  14.2    1.8  1  CBM_1           Fungal cellulose binding domain
  ------ inclusion threshold ------
       0.16   12.0   0.0       0.25   11.4   0.0    1.2  1  DUF5065         Domain of unknown function (DUF5065)


Domain annotation for each model (and alignments):
>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.9   0.0   1.1e-68   6.6e-65       1     198 [.      19     229 ..      19     234 .. 0.94

  Alignments for each domain:
  == domain 1  score: 218.9 bits;  conditional E-value: 1.1e-68
                     XEEEEEEEETTEEEE--...........TSSSB-B---SSS--B..GGTTSCHHCCSTTB.--SSBEEEETTSEEEEEEESSC-TT--S-EEEEE CS
  Glyco_hydro_61   1 Hgvvksltvngkeyegd...........pevvrwsrkakdngpv..tdvtspdiaCnkag.paaavaevkaGdtvtfewkekwissHkGpvlvYl 81 
                     Hg +++++v g+ y+g+           p+v  w+ k+ d g+v  +++ spdi+C++++ pa++++ev+aGd ++++w+  w++sHkGpvl Yl
      CCE28482.1  19 HGRISQVVVKGVAYPGYdspsfaynpnpPNVFGWTIKQMDLGFVspSSFGSPDIICHRDAkPAQSHVEVAAGDVLSLQWT-PWPASHKGPVLDYL 112
                     99************99999*************************9889*********5554999999*************.7************* PP

                     EE-SSS-GTTT--GGGCEEEEEEEE-EETE-ST.EHHHHHCCTTCEEEEE--TTB-SEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEESS-SB CS
  Glyco_hydro_61  82 akcasgddcktvdgsglkWfKideegldasakk.WatdklaengaklsvtiPaslapGeYllRhEiiALhsagskggaQfYpsCaqleVtgsgta 175
                     a+c  ++ c++vd+++lk+fKid +gl +++ + +a d l++n+++++v+iP+slapG+Y+lRhEiiALhsag+ +gaQ Yp+C++l++tgsgt 
      CCE28482.1 113 ANC--NGPCEKVDKTTLKFFKIDGAGLLKQNPQtFADDVLIANNNSWQVQIPKSLAPGNYVLRHEIIALHSAGQPDGAQSYPQCFNLKITGSGTL 205
                     ***..568*******************987666899**999999**************************************************5 PP

                     .--.EEGCCSS-TTSTTTSS-TTT CS
  Glyco_hydro_61 176 lpe.vsfpgaykasdpgilvniye 198
                      p+ v+ +++yk++dpgil+niy 
      CCE28482.1 206 NPAgVKGTELYKSTDPGILTNIYV 229
                     5867******************85 PP

>> CBM_1  Fungal cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4  14.2   1.3e-17   7.5e-14       2      29 .]     349     376 ..     348     376 .. 0.98

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 1.3e-17
       CBM_1   2 wgQCGGigWtGpTtCvsgatCtyqNeyY 29 
                 wgQCGG+gW+GpTtCv+g+tC++qN++Y
  CCE28482.1 349 WGQCGGKGWNGPTTCVAGSTCKQQNPWY 376
                 **************************** PP

>> DUF5065  Domain of unknown function (DUF5065)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.1e-05      0.25      83     134 ..     121     172 ..     101     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.1e-05
     DUF5065  83 gkdedkvKiyrvlddeslvR.YkTiypdsganeneatfetqitdvYepGsYvA 134
                 + d+ ++K +++   + l+   +T   d +  +n++ ++ qi +   pG+Yv 
  CCE28482.1 121 KVDKTTLKFFKIDGAGLLKQnPQTFA-DDVLIANNNSWQVQIPKSLAPGNYVL 172
                 679999******99987765158888.9999********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2811.60
//
Query:       CCE28483.1  [L=495]
Description: related to chromosome segregation protein Cse1p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-17   63.6   4.7    2.9e-05   23.9   0.0    5.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.6e-09   2.9e-05      18      82 ..      92     235 ..      79     248 .. 0.82
   2 !   21.5   0.0   8.8e-09   0.00016       5      48 ..     268     311 ..     265     321 .. 0.85
   3 !   11.6   1.5   1.1e-05       0.2      13      84 ..     366     487 ..     354     491 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.6e-09
                 HHHHHHHHHHHHHHHHHH...........................................................CCCSSTTTSCSS.......... CS
   Mito_carr  18 vatlvttPldvvKtrlqt...........................................................qkksskksksaa.......... 47 
                 +++l+++P++v+Kt lq+                                                           +          +          
  CCE28483.1  92 TSVLMAQPFEVAKTILQArdqdedaalrvaepeaarkksasrtgstydyqdsdseeevsyftshvpgtptssysrglN----------Ksraqspppsa 180
                 6899*****************************999998888888888888888888888887777766666544441..........03444456666 PP

                 ....................HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHH CS
   Mito_carr  48 ....................ildvlkkiykeeGlrglyrGllpnllrvapasalk 82 
                                     +ldv++++++++G  g ++G ++++l ++ +s l 
  CCE28483.1 181 siptkaappehyihvrrpdsVLDVIGQLWQKDGAWGVWKGSNATFLYNVLQSLLE 235
                 77777888999999999*******************************9999876 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 8.8e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaai 48 
                 ++++l++++ a++v++++ +Pld+v+trl + + s+ +++  a+
  CCE28483.1 268 PWASLFVAAGAAVVTGVLLAPLDLVRTRLIMTPVSKGQRRTMAT 311
                 79999***************************999988774433 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHH..................................................CCCSSTTTSCSSHHHHHHHHHHHHHH CS
   Mito_carr  13 glagavatlvttPldvvKtrlqt..................................................qkksskksksaaildvlkkiykeeGl 61 
                  +a ++a+lv  P+++v  r q+                                                  +++s+ k++++++     + +k +G+
  CCE28483.1 366 FFASSAAVLVKLPIETVLRRGQMavlssqeyvralggqdkkfdtvvplgryngvvgtmyhiateegarlnptaANTSGIKQGKSKTKMLQTTRVKGQGM 464
                 67888888999999999999999888888888888888888888888888888888888888888888877763333322222223333445589**** PP

                 HGGGTTHHHHHHHHHHHHHHHHH CS
   Mito_carr  62 rglyrGllpnllrvapasalkfv 84 
                  glyrG+ +n+ + +  +a+ ++
  CCE28483.1 465 EGLYRGWKVNWWGLVGLWAASMA 487
                 ***********999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3550.88
//
Query:       CCE28484.1  [L=193]
Description: probable mitochondrial ferredoxin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-14   53.2   0.8    2.9e-14   52.8   0.8    1.2  1  Fer2      2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.8   1.6e-18   2.9e-14       2      78 .]      87     170 ..      86     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 1.6e-18
                 ETTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSS.SSTTEEEEEESCECTT...SSSSTHHHHHTTEE.....EEGGGSEES CS
        Fer2   2 tidgkevevevadgettlldaaeenggidipysCgggg.CgtClvevlegevqsd...etelegeeldegkl.....rlaCqtivt 78 
                 ++dg+e+++ v +g++ lld+a+ n +i+ + +Cgg++ C+tC+v v+++   ++   ++++e+++ld ++      rl Cq+++t
  CCE28484.1  87 EKDGQEHKFAVSAGDN-LLDIAQAN-DIEMEGACGGSCaCSTCHVIVTDEAFYDKmpePEDDENDMLDLAFGltetsRLGCQVKMT 170
                 689*************.******99.**********************999944435566677777766666***********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1499.96
//
Query:       CCE28485.1  [L=345]
Description: uncharacterized protein CPUR_02172 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-39  132.8   9.8    9.2e-39  132.8   9.8    3.3  3  Rrp15p      Rrp15p
  ------ inclusion threshold ------
        7.7    6.1  30.3      0.063   12.9  15.7    3.3  3  DDRGK       DDRGK domain


Domain annotation for each model (and alignments):
>> Rrp15p  Rrp15p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   2.5      0.21   1.9e+03      44      62 ..      10      28 ..       2      47 .. 0.50
   2 ?   -5.9  17.0         2   1.8e+04       3      43 ..      86     126 ..      64     174 .. 0.57
   3 !  132.8   9.8     1e-42   9.2e-39       1     133 [.     179     330 ..     179     331 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.21
      Rrp15p 44 kakkqlrkekkekeekgrv 62
                 ak+q  ++k++++++ + 
  CCE28485.1 10 DAKQQRPSKKQKRQQQYHS 28
                2333333333333444443 PP

  == domain 2  score: -5.9 bits;  conditional E-value: 2
      Rrp15p   3 damskilssklsekkkkkpiLskakkaekkakkiedeklea 43 
                 ++ +ki s+ ++ ++k++ +  k k++e++++k+e+e++++
  CCE28485.1  86 KKAKKIESKPAKRASKPAAVSKKDKQEEEEEEKEEEEDDDE 126
                 33444444333333333323333333333332222222222 PP

  == domain 3  score: 132.8 bits;  conditional E-value: 1e-42
      Rrp15p   1 fadamskilssklsekkkkkpiLskakkaekkakkiedekleakakkqlrkekkekeekgrvkdviggwt...................lekErrlrkv 80 
                 fa+++skils+kls++k+++p+Ls++++a++++k++ d+ leakak++++++kk++ ekgr+++v+ +++                   le+Errlrkv
  CCE28485.1 179 FATSISKILSTKLSTSKRADPVLSRSAAAHEASKAAVDDVLEAKAKRHMKEQKKKALEKGRIREVLVASRdefdigapedstamttthiLETERRLRKV 277
                 799************************************************************99987778**************************** PP

      Rrp15p  81 AtrGVVkLFNAvraaQkkvekelaeaeelek.lgekkkekvlkelsKekFLdll 133
                 A+rGVVkLFNAvraaQ+k+ +++++a+  e+  g++++e++++elsK++FLdl+
  CCE28485.1 278 AQRGVVKLFNAVRAAQVKAVEAEKDAR-REGvIGMNNREAKVNELSKKGFLDLI 330
                 ********************9999995.5677*********************9 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.9     0.018   1.6e+02      24      38 ..      12      26 ..       2      74 .. 0.57
   2 ?   12.9  15.7     7e-06     0.063       3      76 ..      83     156 ..      81     191 .. 0.91
   3 ?    0.2   0.5     0.055     5e+02      29      43 ..     220     234 ..     200     252 .. 0.54

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.018
                XXXXXXXXXXXXXXX CS
       DDRGK 24 eeeereerkkleekr 38
                +++   +++k+++++
  CCE28485.1 12 KQQRPSKKQKRQQQY 26
                111111111122222 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 7e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       DDRGK   3 lgekkkkkleeKekkrqqreaeeeereerkkleekreeerkekeekeeekekkkeeeerkkeeekerkeqeeye 76 
                 l++kk+kk e K +kr+++ a   ++++++ +ee++eee +++ee   ++e + ++++     ++e+ + +ey+
  CCE28485.1  83 LTKKKAKKIESKPAKRASKPAAVSKKDKQEEEEEEKEEEEDDDEEDDDQDEDEDDDDDDDDDDDDEEDDVDEYD 156
                 799***********************999999999999999999999999999999999999999988888886 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.055
                 XXXXXXXXXXXXXXX CS
       DDRGK  29 eerkkleekreeerk 43 
                 e + k++ k+++++ 
  CCE28485.1 220 EAKAKRHMKEQKKKA 234
                 333333322222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2170  (0.121033); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                       221  (0.0123264); expected 17.9 (0.001)
Passed Fwd filter:                       112  (0.00624686); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.80u 0.35s 00:00:02.15 Elapsed: 00:00:00.52
# Mc/sec: 2002.00
//
Query:       CCE28486.1  [L=638]
Description: uncharacterized protein CPUR_02173 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-43  149.0   0.0    3.1e-43  148.1   0.0    1.4  1  PhoD      PhoD-like phosphatase


Domain annotation for each model (and alignments):
>> PhoD  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   0.0   1.7e-47   3.1e-43      17     322 ..     287     563 ..     263     585 .. 0.82

  Alignments for each domain:
  == domain 1  score: 148.1 bits;  conditional E-value: 1.7e-47
        PhoD  17 yrelaee..e.dlDlvlhlGDyiYeygpgeyaseaaelgreveppkeivtladYReryaqyktdadlqaahaaapfivvwDDHEvaNnswsggaenhqe 112
                  r+la++  + + +++l+lGD+iY +                +p++   + ++YR++y+q +++++++ + +++++i+v+DDHE+ N+ ws++++   +
  CCE28486.1 287 LRHLARKlpDlSAQFMLFLGDFIYVD----------------VPERFGKSTEEYRMQYRQVYASPNWAPVAQNLSWIHVLDDHEISND-WSSNSTGVYN 368
                 67888877656899************................3445667889************************************.***9999999 PP

        PhoD 113 etegdfekrkaaAlqAyfEwmPireakpgeeeriyrsfeyGdladlflLDtRqyrrdqavsyegdeleaaeaevkdpartlLGeeQeqwLkaeLkasra 211
                 +  g +++  +a++ +    m  +++ ++++ + +  f  G+ a++flLDtR+yr++++               + + +t+LG++Q++++ a+L++ + 
  CCE28486.1 369 AAVGPWHTY-QASVNPPTAIMAGTRS-QRRKGATWYDFVQGP-ASFFLLDTRSYRSSNSE------------PFDTEGKTMLGADQLADFLAWLARPEP 452
                 999999665.6677777777777666.588999*********.***************95............567889********************* PP

        PhoD 212 r...WkvlaqqvlmskvdldaelaegalpvnlDawdGypaeRerlletikeaki..rnvVvLtGDvHaawandl....d..ykdpdgeavgvEfvtgsv 299
                 +   Wk++a++v+++k++          +  +D+w G+ +eR+++l+++ +a++  + vV+L+GD+H+++a+++    d  + d   +a + Ef+t+++
  CCE28486.1 453 KgvkWKFVASSVPFTKNW---------PVNVQDTWGGFLVERKKILKAMWDAGTrgNTVVILSGDRHEFAATKFppppDskWSD---SASVYEFSTSPL 539
                 ******************.........46678*****************666541167899*************7655322444...4669******** PP

        PhoD 300 ssgglgeylaeaadateeal.laa 322
                 ++ +    + +++d+++ +l +  
  CCE28486.1 540 NQFASPIPTYKQVDDEDVKLgYIP 563
                 *96655555444666655554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4839.07
//
Query:       CCE28487.1  [L=211]
Description: related to ERP2-p24 protein involved in membrane trafficking [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-46  156.4   3.9    8.5e-46  156.2   3.9    1.1  1  EMP24_GP25L  emp24/gp25L/p24 family/GOLD


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   3.9   4.8e-50   8.5e-46       1     182 []      22     204 ..      22     204 .. 0.92

  Alignments for each domain:
  == domain 1  score: 156.2 bits;  conditional E-value: 4.8e-50
  EMP24_GP25L   1 altfklpageekCfyeelkk.gtlltgsyqvtdggaaldvdlsvkdpdgngerlvkkkdresegdfsftakesgeykvCfdnsfstksskkvsfdiev 97 
                  +lt+ l+a+e+ Cfy e+k  ++++++++ v++gg ++d+d+ v+   +n+++++k  ++e++gdf f+a++ gey++Cf+n++st+++k v+f+i v
   CCE28487.1  22 SLTYRLDANEKACFYAETKTdNEKIAFYFAVQSGG-SFDIDYLVE--GPNNKIILKG-EKERQGDFVFNAQHAGEYSFCFNNEMSTFAEKLVDFEISV 115
                  58999*************999**************.9********..7777999999.777888********************************** PP

  EMP24_GP25L  98 gseasdykdsak....kekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvyyLkrfFk 182
                   +e++ +k   k     e+ ++le+++ k++++l+ i r+qky r+re+r+ +t++st+ r+v++s++q+l++v++++lqv++++ fF+
   CCE28487.1 116 DNEDRTAKLPSKpgtsLEQTSELEQSVFKISSQLSTITRNQKYFRTRENRNFATVNSTEIRIVNFSVIQILLIVCMGALQVFVVRFFFQ 204
                  87766644444445556777889*****************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1024  (0.0571142); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1517.77
//
Query:       CCE28488.1  [L=596]
Description: probable puff-specific nuclear protein Bx42 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-69  230.3   7.1    8.8e-69  230.3   7.1    2.3  2  SKIP_SNW      SKIP/SNW domain


Domain annotation for each model (and alignments):
>> SKIP_SNW  SKIP/SNW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.3   7.1   4.9e-73   8.8e-69       1     160 []     190     348 ..     190     348 .. 0.98
   2 ?   -4.8   7.3         1   1.8e+04     117     150 ..     388     422 ..     358     436 .. 0.51

  Alignments for each domain:
  == domain 1  score: 230.3 bits;  conditional E-value: 4.9e-73
    SKIP_SNW   1 eyikytpsqaeekknseakqriikivekqeDPleppkfkhkkvpagpesppvpvlhspprkltkeeqekwkIPpaiSnwkNpkGytipLdkRlaadgrg 99 
                 ++++ytp+++ + +ns++++ri+kive+q+DPleppkfkhkk+p+gp+spp+pv+hspprklt+e+qe wkIPp +SnwkNpkG+t+pLdkRlaadgrg
  CCE28488.1 190 TFVRYTPASQMG-DNSKKQDRIMKIVERQRDPLEPPKFKHKKIPRGPPSPPPPVMHSPPRKLTAEDQEMWKIPPPVSNWKNPKGFTVPLDKRLAADGRG 287
                 58******5555.89************************************************************************************ PP

    SKIP_SNW 100 lqeveindkFaklseaLeeAerkareevklraelkkklaekekeekeeklrelaekareer 160
                 lq+++indk+a+++ea ++Aer+areev++ra ++++laekek +k+e+lr+la+kareer
  CCE28488.1 288 LQDITINDKHAQFAEAVKMAERHAREEVQQRALMQQRLAEKEKAQKDENLRSLAQKAREER 348
                 ***********************************************************98 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 1
    SKIP_SNW 117 eeAerkare..evklraelkkklaekekeekeeklr 150
                 ++A r+  e  e+++r+++++++  +++e+k ++ r
  CCE28488.1 388 SAASRSDDEdaEIREREKARREK-LRDEERKLRQNR 422
                 44444444400334444443333.333333444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1524  (0.085002); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 4214.12
//
Query:       CCE28489.1  [L=178]
Description: uncharacterized protein CPUR_02176 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-10   41.8   1.9    1.8e-10   41.2   1.2    1.6  2  DUF1772   Domain of unknown function (DUF1772)


Domain annotation for each model (and alignments):
>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.12   2.2e+03      32      54 ..       7      29 ..       2      34 .. 0.53
   2 !   41.2   1.2     1e-14   1.8e-10       7     136 ..      36     168 ..      19     169 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.12
     DUF1772 32 fkrgkavfpplallsalafayla 54
                f++ ka++ + ++ s+++++y++
  CCE28489.1  7 FDTRKALLLAPLVSSSWSLVYAW 29
                55555555555555555555554 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 1e-14
     DUF1772   7 slfvvPallslpassslllkqwrrlfkrg.kavfpplallsalafa.yla..araasrgarllylaaaalllls.......ivpyTllvmvPtNnkLaa 94 
                 + +++P l++ ++ +  l + wr +f  g + v+ +l++++ ++++   +  ++  +r+ +ll++a+aa ++++       ++p+  ++m         
  CCE28489.1  36 NHLTHPELSQRSNAI--LPTYWRVMFPLGiTQVVSLLGTTTWASVGaI-VwhKDLLQRRGSLLWYAGAAGFAVGhllfaplVAPLIKYMM--------D 123
                 5569********999..99*******9999999999999999888844.35988888999999999999988662222222333333333........1 PP

     DUF1772  95 l...k.eedakekedeaevrellerWgrlnlvRavlalaaavlgll 136
                     +  e ++++  +++v+  ++rW  +n+vR +++ ++a+++++
  CCE28489.1 124 DeggRpLERKRAEPGDRNVE-AQQRWLGYNMVRLLTTDLGAWVCCA 168
                 13443333344555666676.789******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1336.38
//
Query:       CCE28490.1  [L=406]
Description: related to endo-1,3(4)-beta-glucanase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-09   36.1   0.0    8.4e-09   35.1   0.0    1.4  1  Glyco_hydro_16  Glycosyl hydrolases family 16
  ------ inclusion threshold ------
      0.093   11.5   0.1       0.13   11.0   0.1    1.1  1  Usher_TcfC      TcfC Usher-like barrel domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   9.4e-13   8.4e-09      28     107 ..     167     263 ..     147     273 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 9.4e-13
                     E.............EEEEEEEECCEESSEEEEEEEE.---STTEEEEEEEET.GGTSTTEEEEE.EEETT-TTEEEEEEE.BTTBSGEEEEEETS CS
  Glyco_hydro_16  28 k.............esgsrikskksflyGkvearik.aaksaGvvtafylss.edekahdEiDi.EflGndtgkvqtnvy.gkGkgkrekrlslw 105
                                   + ++ri+skk++  G +  ++k +++  Gv++a++l++  ++++h+EiD+ E + + ++   ++++ ++G + + +r +++
      CCE28490.1 167 TavgpdskpdastgRFSARIESKKTYDGGLFIFDVKhTPYACGVWPALWLTDpFHWPEHGEIDVlESINEGNDGNAMTLHsTDGCTMSVERKQTN 261
                     45555555555555679*********************************98445*************999999999999455665553344444 PP

                     S- CS
  Glyco_hydro_16 106 fd 107
                       
      CCE28490.1 262 PS 263
                     44 PP

>> Usher_TcfC  TcfC Usher-like barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.5e-05      0.13      79     122 ..     235     278 ..     226     290 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.5e-05
  Usher_TcfC  79 sdGsrGnieqisysdgfslSlyreasrgsdCsssaasdyadigC 122
                 ++G+ Gn+  +  +dg  +S+ r+++  s   + + + y++ gC
  CCE28490.1 235 NEGNDGNAMTLHSTDGCTMSVERKQTNPSLHDDCHHKAYKNAGC 278
                 89************************99988888888999***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3093.98
//
Query:       CCE28491.1  [L=173]
Description: probable Tim22, subunit of the Tim22-complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-40  136.3   9.2    5.2e-40  136.3   9.2    1.4  2  Tim17     Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.55   9.8e+03      87      97 ..       7      18 ..       4      30 .. 0.48
   2 !  136.3   9.2   2.9e-44   5.2e-40       1     111 []      33     160 ..      33     160 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.55
       Tim17 87 altGallr.agp 97
                + +Ga+l  +g+
  CCE28491.1  7 FGGGAMLTpGGA 18
                444455644443 PP

  == domain 2  score: 136.3 bits;  conditional E-value: 2.9e-44
       Tim17   1 cvyktglsgvlGallGavfglvkgsrradtp...............apskerlreglrsvgkrgpslGknfgvvgglysgiecaleklRgkediwnsva 84 
                 c++k+++sgv+G+++G++fg++++s+++dtp               +p++++l++g++++g+r++s++knfg+vg+l+sgiec++e+lR+k+d  n+va
  CCE28491.1  33 CFGKSVMSGVMGFGMGGLFGMFMASMSYDTPfgtpltnsagqtlsaLPLRQQLKHGFKDMGTRSFSMAKNFGKVGALFSGIECGIEGLRAKNDLGNGVA 131
                 99************************************************************************************************* PP

       Tim17  85 AGaltGall..ragpqaaavgaiggaafs 111
                 AG+ltG++l  +agpqa+a+g++++aafs
  CCE28491.1 132 AGCLTGGILakNAGPQAVAGGCLAFAAFS 160
                 ********9644****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1363.13
//
Query:       CCE28492.1  [L=89]
Description: uncharacterized protein CPUR_02179 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 639.93
//
Query:       CCE28493.1  [L=95]
Description: uncharacterized protein CPUR_02180 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 755.80
//
Query:       CCE28494.1  [L=212]
Description: uncharacterized protein CPUR_02181 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-61  206.9   0.0    1.7e-61  206.7   0.0    1.0  1  PGP_phosphatase  Mitochondrial PGP phosphatase
    0.00085   19.3   0.0     0.0016   18.4   0.0    1.5  1  Hydrolase_like   HAD-hyrolase-like
     0.0033   17.7   0.0     0.0044   17.3   0.0    1.1  1  Hydrolase        haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PGP_phosphatase  Mitochondrial PGP phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.7   0.0   2.8e-65   1.7e-61       1     167 [.       5     179 ..       5     180 .. 0.98

  Alignments for each domain:
  == domain 1  score: 206.7 bits;  conditional E-value: 2.8e-65
  PGP_phosphatase   1 lsatlavlkllknpslvlPhltvptfrqlpieig.....kkkektikavvlDKDnclaapkedkvaeeikekleelrevypeksilivSNsaGs 89 
                      lsa+l +++ll +ps +lPh tv+tf++lpi+++       ++++i+avvlDKD+c+a+p++++v+ +++++++ l+++yp++++l+vSN++G+
       CCE28494.1   5 LSASLHATRLLFKPSICLPHYTVSTFNELPIPLDkglaqLGHRSDIRAVVLDKDDCFAYPDAKEVYGPYQKHFDDLKRAYPGRKLLVVSNTSGA 98 
                      6899999***************************999988899*************************************************** PP

  PGP_phosphatase  90 sd.dkdaekaealekktgipVlrhkekKPgcaeevleyfkerkv..veeadeiavvgDRllTdvllanmmGslgvwlrdgv 167
                      +  d d ++a+ +ek+tgi+Vl h++kKPgc+ ++++yf+e+ +  v++++ +avvgDRl+Td++lanmmG++g w++dgv
       CCE28494.1  99 TTwDRDLKQAALVEKSTGIHVLSHSVKKPGCGAQIMAYFEEHPEsgVTDPSHVAVVGDRLTTDMMLANMMGGWGFWIKDGV 179
                      *****************************************98888**********************************9 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.7e-07    0.0016      18      52 ..     145     179 ..     117     189 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.7e-07
                     ---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSS CS
  Hydrolase_like  18 gsdpeevlmiGDrlatDiagAnnaGwksvLVltGv 52 
                       dp++v ++GDrl tD+  An +G  +  ++ Gv
      CCE28494.1 145 VTDPSHVAVVGDRLTTDMMLANMMGGWGFWIKDGV 179
                     45699*******************98888888887 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.3e-07    0.0044      79     207 ..      32     166 ..      23     169 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.3e-07
                 HHHCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHT..TEEEEEEESSEHHHHH.HHHHHTTGGGESEEEEHHCESSTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  79 aldippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaa..gievvlltgdnpetae.raanqlGddyfdaviasdietvakp 174
                 +l+ip d g a   + s+ r v+l+    +  f+  d ++v+    + +  Lk+a  g ++ ++++ + +t + r ++q+    ++ + ++ +  ++  
  CCE28494.1  32 ELPIPLDKGLAQLGHRSDIRAVVLD---KDDCFAYPDAKEVYGPYQKHFDDLKRAypGRKLLVVSNTSGATTWdRDLKQAA--LVEKSTGIHVLSHSVK 125
                 4488999999999999999999998...677777777777*************999999********************88..3344444444444444 PP

                 SHHHHHHHHHHHT.......STGGGEEEEESSHH.HHHHHH CS
                 xxxxxxxxxxxxx.......xxxxxxxxxxxxxx.xxxxxx RF
   Hydrolase 175 spegkvaaireLq.......gkpeevamVGDgvn.Daaala 207
                 +p +  +++  +         +p++va+VGD+++ D+  + 
  CCE28494.1 126 KPGCGAQIMAYFEehpesgvTDPSHVAVVGDRLTtDMMLAN 166
                 5555555555554455677778***********97876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1704.86
//
Query:       CCE28495.1  [L=94]
Description: uncharacterized protein CPUR_02182 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.17   12.0   0.1       0.29   11.2   0.1    1.4  1  Lambda_CIII  Lambda Phage CIII


Domain annotation for each model (and alignments):
>> Lambda_CIII  Lambda Phage CIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.6e-05      0.29      31      42 .]      47      58 ..      43      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.6e-05
  Lambda_CIII 31 rlidiLNQPGvP 42
                 + id+LNQP vP
   CCE28495.1 47 QAIDLLNQPSVP 58
                 569********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 719.15
//
Query:       CCE28496.1  [L=97]
Description: uncharacterized protein CPUR_02183 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 757.35
//
Query:       CCE28497.1  [L=158]
Description: uncharacterized protein CPUR_02184 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1126.35
//
Query:       CCE28498.1  [L=157]
Description: uncharacterized protein CPUR_02185 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0043   17.0   0.2     0.0054   16.6   0.2    1.2  1  DUF2017   Domain of unknown function (DUF2017)
  ------ inclusion threshold ------
       0.22   11.3   0.1       0.51   10.1   0.0    1.6  2  DUF3989   Protein of unknown function (DUF3989)


Domain annotation for each model (and alignments):
>> DUF2017  Domain of unknown function (DUF2017)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   6.1e-07    0.0054      10      64 ..       7      57 ..       3      98 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.1e-07
     DUF2017 10 rldeaEaelLrslvaqvlelLeeraasapeeDeLaaltglrtgpaepPeDpaLaR 64
                +ld++ ++ +++ v+q l+lL++r +++  eD La+  +   +p ++P+D+++aR
  CCE28498.1  7 SLDDHSRSPIENYVQQSLGLLQDRLQQS--EDRLAQSEAA--APRTQPRDSTVAR 57
                7999*****************9998665..7***999999..************9 PP

>> DUF3989  Protein of unknown function (DUF3989)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.1     1e+04      11      22 ..      27      38 ..      19      40 .. 0.61
   2 ?   10.1   0.0   5.7e-05      0.51       7      31 ..      95     119 ..      90     121 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.1
     DUF3989 11 aderLrglcdrl 22
                +++rL++  drl
  CCE28498.1 27 LQDRLQQSEDRL 38
                455565555555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 5.7e-05
     DUF3989   7 ikdraderLrglcdrlspekRlivv 31 
                  +  +++rL   c++l+p++R i v
  CCE28498.1  95 WRIAIEDRLMTDCAALPPRQRWIFV 119
                 55679****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1196.20
//
Query:       CCE28499.1  [L=574]
Description: related to origin recognition complex subunit 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.8e-105  350.1   0.0   1.3e-104  349.7   0.0    1.1  1  ORC2      Origin recognition complex subunit 2
  ------ inclusion threshold ------
       0.14   10.8   2.4        0.2   10.3   2.4    1.1  1  Hamartin  Hamartin protein


Domain annotation for each model (and alignments):
>> ORC2  Origin recognition complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.7   0.0  1.5e-108  1.3e-104       1     307 [.     258     568 ..     258     570 .. 0.97

  Alignments for each domain:
  == domain 1  score: 349.7 bits;  conditional E-value: 1.5e-108
                 XXXXXXXXX-TTTHHHHHHHHHH..HHHSHHHHHHHHHHHGGGHHHHHHHHHTT-EEEE--SS--HHHHHHHHSSS----.........SSS-EEEE-- CS
        ORC2   1 SnntlsslplLdeeeyerllekl..kdthekekekLeklhkklfpqwlfeLeqGFslllyGvGSKrklleeFaeellskr.........kdgpvvvvnG 88 
                 S+ntl s+  L+++ey+++++     d+h+ ++e+Le+lh++lfpqw+feL+qG+s++lyG+GSKr+ll++Fa+ l + +         ++ ++++vnG
  CCE28499.1 258 SDNTLGSVAMLTHDEYFSIVHGSnyVDRHSADVEYLENLHAELFPQWVFELSQGYSICLYGFGSKRNLLHKFARYLSRLHgasnddtslSRCKTIIVNG 356
                 89******************988779***********************************************99777559********999******* PP

                 --TT--SHHHHHHHHHTT--S.---SSS--HHHHHHHHHHHHHS--S-..S--EEEES-SSSTTTTSHHHHHHHHTTTT-SSSEEEEE--STTHHHH-- CS
        ORC2  89 ylpsltlkdilseiasallekkeakklsssvaaqlekilslleekeseeksklylvihniDgpsLrkekaqalLarLaaipqIhliasiDhinapllwd 187
                 y++++tl++il++i++a+ ++   k  sss  a+l+ il+ l+ +      +l++++++iD+ +Lrk+ aq+lL++La++pqI+l++s+D+++++llwd
  CCE28499.1 357 YTHTTTLREILTCISTAVDPSL--KPPSSSAPAMLSSILAQLSLTG----LTLTIIVNSIDAHPLRKPGAQSLLSQLASHPQINLVCSVDTPDFSLLWD 449
                 *****************99985..999999999*******997774....56*********************************************** PP

                 HHHHTTS-EEE---------GGGGGG--.-TT---.--.----HHHHHHHHHHS-HHHHHHHHHHHHHHHT--------------------BHHHHHHH CS
        ORC2 188 ssklsqfnfvfhdvtTfapysaElsfedevlellgrskrrvggkegakfVLkSLtenarklfklLveeqLekkeseekkekskkgseeagveykelynk 286
                    +s fnf+fhd+tTfap s+El+++dev+ellgr++rrv g+eg++fVLkSL+ena+klf+lL+ e+L    +e++ ++s ++ e+agvey+++ynk
  CCE28499.1 450 IGIRSAFNFLFHDCTTFAPLSVELDVVDEVHELLGRQARRVNGREGVAFVLKSLPENAKKLFQLLIGEVLI-AGMEDEGAASAREDEAAGVEYRMVYNK 547
                 ***********************************************************************.89999999******************* PP

                 HHHS--SSSGGGHHHHHHHHT CS
        ORC2 287 areefivssemalrtlLkEFk 307
                 a+eefi+ssema+rtlLkE++
  CCE28499.1 548 AVEEFICSSEMAFRTLLKEYV 568
                 *******************96 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.4   2.2e-05       0.2     277     392 ..      39     150 ..      16     197 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.2e-05
    Hamartin 277 tsspytdlqsstgsststpistkrlqlssl.sgtspavlsvessrskddeislWSPssvcgmttppsspgivptte.lelsssasllsskvsstpeaag 373
                 +++p ++  ss++++t+ p  ++    +++ s  +++++ +++ r+++++     P + +g  t+ps +g  p+ + ++ s +++ ++++++ tp + +
  CCE28499.1  39 NATPTKRPRSSMTRATRIPQASSA--AENIeSEDNAKLIGTSTARRNHSSR--GIPATPTGA-TTPSRRGRPPAASaSQTSTPTKTPTKSIFATPVK-A 131
                 455555555555555555544444..2222022222222233333333322..456666665.5567888888888899999999999999999998.7 PP

    Hamartin 374 katpetTPakssrklppsl 392
                 + + ++TP ++  + + ++
  CCE28499.1 132 RENEAATPKRKAADRSARK 150
                 7788899988877543333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4025.33
//
Query:       CCE28500.1  [L=903]
Description: uncharacterized protein CPUR_02187 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.34   11.1   1.8         35    4.6   4.2    2.4  2  DUF4633   Domain of unknown function (DUF4633)


Domain annotation for each model (and alignments):
>> DUF4633  Domain of unknown function (DUF4633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   4.2    0.0019        35       4      40 ..     496     531 ..     493     537 .. 0.79
   2 ?    1.0   0.0     0.026   4.6e+02      62      90 ..     791     819 ..     781     839 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0019
     DUF4633   4 glRsqslRgPrpsYgkLqepwgrplegrlrRalslrq 40 
                 + R q l +P +s+gk   p+ +p   r +R+ sl  
  CCE28500.1 496 AQRRQTLPRPDQSFGKQSSPHKKPSG-RRKRTASLSL 531
                 6799*******************975.5555555543 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.026
     DUF4633  62 qeilpgglgDteqliqaqqaesrrwlrqY 90 
                 + ++ +glgD +  +  ++ ++r+wl   
  CCE28500.1 791 SGVICVGLGDAAASLIGRRYGRRKWLWGG 819
                 556789*******************9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (903 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 6671.42
//
Query:       CCE28501.1  [L=317]
Description: uncharacterized protein CPUR_02188 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        9.8    5.2  23.9         14    4.7  23.9    1.4  1  SOG2      RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  23.9   0.00078        14     178     342 ..     107     263 ..      21     298 .. 0.46

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.00078
        SOG2 178 ksisttssgssstlvssaesstesrassvtytart..RhagsfsaqdveqGaaltplrsdqipfnl.........srsrrssssgn.saspaangaqse 264
                 +  s ++ +++  ++s+++s+t  ++ ++t+ a     + ++                       +         ++ ++ ++  + +++p+a +++s+
  CCE28501.1 107 QDASLSNATTP--AISTEQSKTTANPVQSTPPAVVssSSLPLT----------------------TvpvvlttstAAPSSPAPEATsTSTPKAPQQTSQ 181
                 11111111111..122222222222222222222111112222......................0111222211111111111110111111111111 PP

        SOG2 265 tsersasssgvqssasstPlgegstsp.........p.galsrqslsttgststltsssksrsssrsntnasastprslattpappas 342
                  +++++    ++s+a+++P++++s++p         +   +s  + + t+s+  +tss+k  ++ ++  ++++s p  ++ t+  p+ 
  CCE28501.1 182 -PPQAS----TTSNAPQVPVTTSSNAPattpgevetSsTPPSPDTSAPTTSDVAPTSSNKFEKTITTG-RVATSIPVAHVMTTTLPNG 263
                 .11111....1234444444444444422211111100122222222333333344444433322222.5555555555555543333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       865  (0.0482459); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 2166.68
//
Query:       CCE28502.1  [L=135]
Description: uncharacterized protein CPUR_02189 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-15   58.0  15.9      2e-15   57.3  15.9    1.3  1  DUF1754          Eukaryotic family of unknown function (DUF17
  ------ inclusion threshold ------
       0.51   11.0  10.1       0.74   10.4  10.1    1.2  1  Adaptin_binding  Alpha and gamma adaptin binding protein p34
        7.3    4.8  14.5        8.4    4.6  14.5    1.0  1  CDC45            CDC45-like protein


Domain annotation for each model (and alignments):
>> DUF1754  Eukaryotic family of unknown function (DUF1754)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3  15.9   3.4e-19     2e-15       1      97 [.       5      93 ..       5      94 .. 0.71

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 3.4e-19
     DUF1754  1 eysevvgGkLKLKgkkivkegvkKkkkkkkkkskekkeeekekeeeekssaesdaesekdkeeeeddseekkekeeeqenlTeAErkfeevrkKrlk 97
                eys+++ G LKLKg+k +   +kKkkk+k+k + +k  ++++ e  ++++++++     ++++e+++++e+ + e  +  +TeAEr++eev++Krl 
  CCE28502.1  5 EYSTIGSGALKLKGAK-I---QKKKKKRKPKADLDKDLAIQKREADDAQNSDDQ----GKQRQEQNEDHEDADGEIVEPRKTEAERRYEEVKRKRLL 93
                7***************.5...356666666666666666666666666666666....445555555555555556678****************86 PP

>> Adaptin_binding  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  10.1   0.00012      0.74      30     102 ..      22     129 ..      13     132 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
  Adaptin_binding  30 snrnasleteadeaqlekeeeeqdpsqpastepdksaaesesadaef...................................lfggdeaarled 88 
                      ++++++ + +ad+++  + + +++++ ++s +++k+++e+++++++                                    +  ++ + r+e+
       CCE28502.1  22 QKKKKKRKPKADLDKDLAIQKREADDAQNSDDQGKQRQEQNEDHEDAdgeiveprkteaerryeevkrkrllklaesstarpELLKTHKERVEE 115
                      4444444445666666666666666666666666666666655555566667777777777********************988899999**** PP

  Adaptin_binding  89 lesllsklqqakdn 102
                      l+  lskl ++ d+
       CCE28502.1 116 LNTYLSKLSEHHDM 129
                      **********9987 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  14.5    0.0014       8.4     125     224 ..      25     124 ..      11     130 .. 0.43

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0014
       CDC45 125 aleeeeesdeede...eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrsepsakklrrqlkkerrkyeavlekyy 220
                 + ++++++d +++   ++ e dd  ++++++ ++++e++e++e+ +++  +   +++e++++ +e +rkr  + ++++++r +l+k  ++  ++l++y 
  CCE28502.1  25 KKKRKPKADLDKDlaiQKREADDA-QNSDDQGKQRQEQNEDHEDADGEIVE--PRKTEAERRYEEVKRKRLLKLAESSTARPELLKTHKERVEELNTYL 120
                 333333333222233322212222.22222222222222222222222222..1122223344455555555555556666667777777777788887 PP

       CDC45 221 sqgt 224
                 s+ +
  CCE28502.1 121 SKLS 124
                 7765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1766  (0.0984996); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1096.31
//
Query:       CCE28503.1  [L=611]
Description: related to large neutral amino acid transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-61  207.0  37.7    5.4e-61  206.7  37.7    1.1  1  AA_permease_2  Amino acid permease
    2.1e-24   86.0  23.0    2.1e-24   86.0  23.0    1.9  2  AA_permease    Amino acid permease
  ------ inclusion threshold ------
        0.3   10.8   4.4        8.3    6.1   0.8    2.7  3  DUF1673        Protein of unknown function (DUF1673)


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.7  37.7     9e-65   5.4e-61       2     411 ..     120     571 ..     119     584 .. 0.85

  Alignments for each domain:
  == domain 1  score: 206.7 bits;  conditional E-value: 9e-65
  AA_permease_2   2 sllsafalvigsvigsgifvkn.....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvl 92 
                    ++l  + l+ig++igsgif ++     +++s+g+al++wv+ ++l++  ++++ yaEl++a+p +gG+ vy++++fg++++fl++w++++   p+ 
     CCE28503.1 120 TYLNGLSLIIGLIIGSGIFSSPsqissNVGSPGAALVVWVVAGILAW--TGAASYAELGGAIPLNGGAQVYLAKTFGELAGFLFTWTAVLVLKPGS 213
                    56777899****************99999999998888888877775..8********888***************************99999987 PP

  AA_permease_2  93 asi.lsvaasyllnalgp....dlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl....stet 179
                    a+i ++++a+y++ a+ +    ++  n+w ++ +a a ++lv+l n+++++ + +i+ +l+ lk+ + l+++ ++g++++  g+         ++ 
     CCE28503.1 214 AAIiAIIMAEYFVRAIIGaeaeHV--NPWVYKSVALAGILLVTLGNCVSTRMGTRINDMLMFLKF-GALLFVTVVGIVVAVTGYTFKGekdvAWKA 306
                    7762677*******9854443333..799************************************.7*************9986654468776666 PP

  AA_permease_2 180 dtffpngwp.g.v.llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggk 270
                    + +f+++++ + + +++l++ lw++dG+++ ++v+ e ++  +d+p++i  ++ +v+++y+l n+a++ v+p +e++ +++   va  f ++++g+
     CCE28503.1 307 KDWFSDTSMdLsNwAVALYGGLWAYDGWDNTNYVVGEFRNpsRDLPRVIHTAMPLVILSYVLANVAYFLVLPVEEVNGSNT---VAVMFGAKAFGP 399
                    67999955545345779********************555559**********************************8665...6788888889** PP

  AA_permease_2 271 vvaiivvilialsllgaintavigssrvlealardgvlPrffakv............................nkfgs........piraiiltai 330
                    v++ii+++++  s+lga++  ++++ r+++ ++++g++P  f k+                                         pi+a++l+ +
     CCE28503.1 400 VGSIILALVVSASCLGALTCSTFTAGRLVYVAGKEGYIPAIFGKIglrahnqdqglstqrtrscfsrklnqifG---DgemglfftPIYALVLNGL 492
                    *********************************************77777777777777776666666654440...155555555********** PP

  AA_permease_2 331 vslillllfllassaaynfllsvsslgliisyllliigalilrkkrphlkrpgk..ilvaiigalfllfll..valffppkgpat 411
                    ++ + ++++       + +l++ + ++ + +y+ +++g +ilr+++p+l+rp+k  i++ ii+++++lfll  ++++ p +++a+
     CCE28503.1 493 LT-VGYCIM-----GEFATLVTFYGVAGYTFYFCTVLGIIILRVREPQLERPYKtwITTPIIFCCVSLFLLsrAVFAQPIQTLAV 571
                    *9.787766.....37***********************************8887558999999999999866555555555554 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0  23.0   3.4e-28   2.1e-24       5     332 ..     127     445 ..     124     455 .. 0.87
   2 ?   -4.9   5.0       1.2   7.3e+03     337     416 ..     483     557 ..     477     588 .. 0.59

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 3.4e-28
  AA_permease   5 ialggviGtglfvglgvvlsqaG.plgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGln..ylfswitvlaleltaasi 99 
                    +g +iG g+f + + + s++G p++al+++++ag+  +  + s +e+  ++p +gg+++y +++ g+ +Gf   +   +++    +++++++ a++
   CCE28503.1 127 LIIGLIIGSGIFSSPSQISSNVGsPGAALVVWVVAGILAWTGAASYAELGGAIPLNGGAQVYLAKTFGELAGFLFTWTavLVLKPGSAAIIAIIMAEY 224
                  569***********99999998736666**************************************************66555555666666666777 PP

  AA_permease 100 liqfw.el.vtdlpkawvt...gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsi.fknnlppgfa 191
                  ++  + +   ++++  wv+   ++  ++++++ n v+ ++  ++  +l+++k+ a++ + +vgi++ + g + kg       +++++ +k+++++   
   CCE28503.1 225 FVRAIiGAeAEHVN-PWVYksvALAGILLVTLGNCVSTRMGTRINDMLMFLKFGALLFVTVVGIVVAVTGYTFKG------EKDVAWkAKDWFSDT-- 313
                  66644133355555.777798877779999999******************************999999999999......444443145566666.. PP

  AA_permease 192 keeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvla 289
                     ++ ++n+++++   + a++G  ++ ++ gE ++P++++P++i  ++ +++++Yvl+ +++ l++p    +  n   ++    v f+ ++  +v +
   CCE28503.1 314 ---SMDLSNWAVALYGGLWAYDGWDNTNYVVGEFRNPSRDLPRVIHTAMPLVILSYVLANVAYFLVLPVEEVNGSN---TV---AVMFGAKAFGPVGS 402
                  ...9999****************************************************************66666...33...588*********** PP

  AA_permease 290 plinaviltaalssansslysasRvlyslakdglaPkvlkkvs 332
                   ++++v+ +++l+++  s+++a R++y   k+g++P++++k++
   CCE28503.1 403 IILALVVSASCLGALTCSTFTAGRLVYVAGKEGYIPAIFGKIG 445
                  *************************************999986 PP

  == domain 2  score: -4.9 bits;  conditional E-value: 1.2
  AA_permease 337 PlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRkalkyqgrsieelgfkaallplgvi 416
                  P+ a++l  ++ +   ++ ++++    v+ + +a +++++  v+++iil       + + ++ +i   +++ ++++l++ 
   CCE28503.1 483 PIYALVLNGLLTVGYCIMGEFATL---VTFYGVAGYTFYFCTVLGIIILRVREPQLE-RPYKTWI-TTPIIFCCVSLFLL 557
                  566666666666666666666666...666666666666666666666655544444.3344444.45555555555554 PP

>> DUF1673  Protein of unknown function (DUF1673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.42   2.5e+03      64      86 ..     199     220 ..     191     230 .. 0.71
   2 ?    6.1   0.8    0.0014       8.3     136     215 ..     227     302 ..     204     309 .. 0.75
   3 ?    5.0   0.1    0.0029        17      39     162 ..     451     577 ..     443     589 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.42
     DUF1673  64 lfftllsllvltqlGinlialli 86 
                  +ft++++lvl+  G ++i+++i
  CCE28503.1 199 FLFTWTAVLVLK-PGSAAIIAII 220
                 579999999997.6764444443 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0014
     DUF1673 136 kievtenenpvlrwllrllllviflliavllillsyvesiagelqlgevvssfisgllllllwliylqviywekkNkkti 215
                 ++ +     +v  w+ +++ l  +ll+    +l   v+ ++g+  ++  ++++++ ll+++++ i   v+ + +k +k +
  CCE28503.1 227 RAIIGAEAEHVNPWVYKSVALAGILLV----TLGNCVSTRMGTRINDMLMFLKFGALLFVTVVGIVVAVTGYTFKGEKDV 302
                 455556667777788777766666555....77777777777766777999999999*************9999988877 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0029
     DUF1673  39 keenesseenpgwvdkrsnrill...vslfftllsllvltqlGi.nlialligll.........lsllliiltwkkqmqiyddikralvektvdkisik 124
                 ++++ s + + + +++  n+i+    + lfft+++ lvl+  G  ++   ++g +            +++  t+ + ++i+  +++   e++ ++ +++
  CCE28503.1 451 QDQGLSTQRTRSCFSRKLNQIFGdgeMGLFFTPIYALVLN--GLlTVGYCIMGEFatlvtfygvAGYTFYFCTVLG-IIILR-VREPQLERPYKTWITT 545
                 556667779999999999***9988999**********98..8876777777777666666566333334444433.44555.6666666677777777 PP

     DUF1673 125 rilfkpvvIiikievtenenpvlrwllrllllviflli 162
                  i+f        +++    + v+  ++++l +v+f+++
  CCE28503.1 546 PIIF------CCVSLFLLSRAVFAQPIQTLAVVAFVIA 577
                 7777......5555555555666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 4827.56
//
Query:       CCE28504.1  [L=428]
Description: probable formate dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-52  174.9   0.0    1.7e-51  174.1   0.0    1.4  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    1.8e-15   56.8   0.0    2.5e-15   56.3   0.0    1.1  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    4.8e-05   23.6   0.0     0.0001   22.5   0.0    1.5  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.1   0.0   2.9e-55   1.7e-51       1     177 [.     185     369 ..     185     370 .. 0.95

  Alignments for each domain:
  == domain 1  score: 174.1 bits;  conditional E-value: 2.9e-55
                   HHHHHHHHTTHHHHHHHHHTTCC.HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTC.EECSHHHHHHH-SE CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregew.ksekallgkelsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgv.elvsleellaesDi 94 
                   ++ +l l+r++  a+e+v++gew  + +a + ++l+gk vG +G+GrIG++v +rl++f++ +++++d ++ ++++e+e g+ ++++++ella++D+
    CCE28504.1 185 IMTILILIRNFVPAHEQVERGEWdVAAAAKQEYDLEGKIVGTVGVGRIGERVLRRLRGFDCkELLYFDYQPLSQDKEKEIGCkRVDTMDELLARCDV 281
                   57899******************8888899999****************************77999999999999*******6677*********** PP

                   EEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTT.....EEE-SS- CS
  2-Hacid_dh_C  95 vslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpn.....viltPHi 177
                   v++++pl++ tr+l+n+  ++kmkkg++liNtaRG++vde+a+++aLksg++ag++ Dv+ ++p+ + +pl++++n       + PH+
    CCE28504.1 282 VTINCPLHQGTRGLFNKGLISKMKKGSYLINTARGAIVDENAVAAALKSGHLAGYGGDVWFPQPAAPGHPLRTVKNpfgggNAMVPHM 369
                   *************************************************************************999888888888998 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   4.1e-19   2.5e-15      13     126 ..      89     394 ..      81     400 .. 0.86

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 4.1e-19
                 HHHHHTTEEEEEES..CSSHHHCHHHHTTESEEEE-TTS..-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHT..T-EEEE-TTTTHHHHHHHH... CS
                 xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx... RF
  2-Hacid_dh  13 ellkeegvevevkd..ellteellekakdadalivrsnt..kvtaevlealpkLkviaragvGvDnvDldaaker..GilVtnvpgystesvAElt... 102
                 ++l+++g+++++++  e  + +  +++ da+++i++      +t+e l+++++Lk+  +ag+G D+vDldaa++   Gi+V++v g++  svAE+    
  CCE28504.1  89 KWLEDQGHTLVTTSdkEGENSKFDQELVDAEIIITTPFHpgYLTEERLAKAKNLKLAITAGIGSDHVDLDAANKTngGITVAEVTGSNVVSVAEHIimt 187
                 67888777555444477788899999999******9998778******************************875449******************999 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  CCE28504.1 188 ililirnfvpaheqvergewdvaaaakqeydlegkivgtvgvgrigervlrrlrgfdckellyfdyqplsqdkekeigckrvdtmdellarcdvvtinc 286
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                 ....................................................................................T-BHHHHHHHHHHHH CS
                 ....................................................................................xxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ....................................................................................aaTeeaqeniaeeaa 117
                                                                                                     + + +aq++ a+ + 
  CCE28504.1 287 plhqgtrglfnkgliskmkkgsylintargaivdenavaaalksghlagyggdvwfpqpaapghplrtvknpfgggnamvphmsGTSLDAQKRYADGTK 385
                 999999999999999999999999999999888888888888888888888888888888888888888888888888888887777788888777777 PP

                 HHHHHHHTT CS
                 xxxxxxxxx RF
  2-Hacid_dh 118 enlvaflkg 126
                   l+++l+g
  CCE28504.1 386 AILTSYLTG 394
                 766666666 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.7e-08    0.0001       2     106 ..     224     330 ..     223     335 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.7e-08
                    EEEE--SHHHHHHHHHHHHTT-.EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagy.kvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstsspe 95 
                    +g +G+G +G+   ++l   ++ ++  ++ ++ + ++  + g+k ++++ el+a++dvv +  +  + ++ + ++ l++++kkg++li+++  ++ 
     CCE28504.1 224 VGTVGVGRIGERVLRRLRGFDCkELLYFDYQPLSQDKEKEIGCKRVDTMDELLARCDVVTINCPLHQGTRGLFNKgLISKMKKGSYLINTARGAIV 319
                    799**************87665279999*********************************************999****************9999 PP

                    HHHHHHHHHHH CS
  NAD_binding_2  96 dtrelakelke 106
                    d + +a++lk+
     CCE28504.1 320 DENAVAAALKS 330
                    99999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.34
# Mc/sec: 3726.63
//
Query:       CCE28505.1  [L=234]
Description: uncharacterized protein CPUR_02192 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-08   32.3   4.5    1.6e-07   31.3   4.5    1.5  1  bZIP_1    bZIP transcription factor
     0.0025   18.0   7.1     0.0045   17.2   7.1    1.5  1  DUF2476   Protein of unknown function (DUF2476)
     0.0055   16.8   4.2     0.0055   16.8   4.2    2.2  3  bZIP_2    Basic region leucine zipper


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   4.5   2.7e-11   1.6e-07      11      63 ..     152     204 ..     150     205 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2.7e-11
                 --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  11 qkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevekLkskv 63 
                 ++ R a  ++R RK+ ei++Le++   +e  N  L+s +e+lk e+ +Lk+++
  CCE28505.1 152 ERSRMASNKFRARKRSEIAQLETEEYNIEDANRHLRSIMESLKSEILSLKMQI 204
                 57799*********************************************986 PP

>> DUF2476  Protein of unknown function (DUF2476)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   7.1   7.5e-07    0.0045     217     247 ..      78     112 ..      21     126 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7.5e-07
     DUF2476 217 LdlhllepfPsSPLQpLPPspspsphqrpe....r 247
                    h+  p+Ps P+Q+LPP p +sp++rp      
  CCE28505.1  78 APTHFSTPVPSTPIQALPPNPRRSPAKRPLvkneV 112
                 4579999*********************9744333 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.2       1.4   8.4e+03      18      28 ..     120     130 ..     119     135 .. 0.49
   2 !   16.8   4.2   9.2e-07    0.0055      13      54 .]     155     196 ..     147     196 .. 0.93
   3 ?   -1.5   0.0      0.46   2.7e+03      27      48 ..     197     218 ..     194     222 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.4
                 X-HHHHHHHHH CS
      bZIP_2  18 rsRekkkakee 28 
                 r R + + k  
  CCE28505.1 120 RARTRNRSKSL 130
                 44555555544 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 9.2e-07
                 XXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  13 reAarrsRekkkakeeeleervkeLeeeNaqLrqkveqLeke 54 
                 r+A+ ++R +k+ + ++le +  + e  N  Lr   e+L+ e
  CCE28505.1 155 RMASNKFRARKRSEIAQLETEEYNIEDANRHLRSIMESLKSE 196
                 9************************************99976 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  27 eeeleervkeLeeeNaqLrqkv 48 
                   +l++++ +  + N++L q++
  CCE28505.1 197 ILSLKMQILQHANCNCTLIQEY 218
                 5678888888888899998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1251  (0.0697752); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1803.91
//
Query:       CCE28506.1  [L=590]
Description: related to high affinity methionine permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-61  208.2  33.2    2.3e-61  207.9  33.2    1.0  1  AA_permease_2  Amino acid permease
    2.8e-18   65.8  28.2    4.1e-18   65.2  28.2    1.2  1  AA_permease    Amino acid permease
  ------ inclusion threshold ------
      0.047   13.9   1.3         60    4.0   0.0    3.7  3  YqjK           YqjK-like protein
       0.78   10.2   3.9         13    6.3   0.0    3.1  3  DUF4231        Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.9  33.2   5.1e-65   2.3e-61       2     421 ..      69     505 ..      68     510 .. 0.87

  Alignments for each domain:
  == domain 1  score: 207.9 bits;  conditional E-value: 5.1e-65
  AA_permease_2   2 sllsafalvigsvigsgifvkn.....laasggpalilwvwiavligslavllvyaElssa.lprsgGiyvytkaafgkkvaflsawfnwfayvpv 91 
                    ++++ ++l ++ ++g+g+f ++     +++s+g ali w +++ ++  +a++ +y+El+s  ++rsg ++vy+++a++++ +f+ + +++ + +++
     CCE28506.1  69 GWVTIIFLNVNQMVGTGVFSTPgiilgATGSVGLALIYWTLGGLMA--IAGFGTYLELASYfPNRSGSEVVYLEQAYPRPRYFFPVAYAVQSVILS 162
                    8***********************9999999999999999998888..59********9999********************************** PP

  AA_permease_2  92 lasilsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl..stetdtffpn 185
                    ++s++++++s +l  +++  +++ w ++++aia ++l +l  i++ k s +++n+ g lki ++li++ i+gl++++g+    +    +  + f +
     CCE28506.1 163 FSSSNAIVLSRYLWRIAGR-TPSEWEMKGVAIAAYTLAVLCVIVHNKFSMWAANVFGMLKI-ITLIFISITGLVVLGGHAPRVPhpGANFRNAFEG 256
                    *999877666555556556.4899*************************************.8************988877776552233333333 PP

  AA_permease_2 186 .gwpgv..llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggk.vvaii 275
                     +++g+   ++l  ++++++Gf++a n+++e+k     +++ + ++++ v+vl++l n+a++ +v ++++ +++++   a++ff av+g+ +++++
     CCE28506.1 257 tTNNGNdlSSALVSIVFTYTGFSNAFNMVNEIKDpiPSLKRHGLSSVVGVSVLFVLCNVAYFSAVDKSTFGQSKEIA--AGVFFVAVFGPgTAETA 350
                    37777454778999*****************999778**********************************999975..9********988***** PP

  AA_permease_2 276 vvilialsllgaintavigssrvlealardgvlP..rffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgliisylllii 367
                    +++l+ ls+ g++++ +ig+sr++++++r+gvlP  +f+  + +fg+pi+   l ++ ++i++ +    +  ++a++f++s+ +++   + l++ +
     CCE28506.1 351 LNVLVLLSAYGNLLASLIGQSRMIREIGRQGVLPftDFWVTTKPFGTPIGPYALRWLMTFIMIAA----PpaGDAFQFVVSLKTYPEAMFGLAMTL 442
                    ***********************************************************887533....33589********************** PP

  AA_permease_2 368 galilrkkrphl..kr..pgkilvaiig.alfllfllvalffppkgpa..tqssliyt..iil 421
                    g+ i+r++r++   ++  ++ + v +++  l+ +fllv++++ppkg     + s++y+  +++
     CCE28506.1 443 GVYIIRRRRRRNqlPEskFRVYNVLLVFyNLVQVFLLVMPWWPPKGGPyaGNVSFWYAtyCVT 505
                    ******9988553555335555444444478899999********997557777899875443 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2  28.2   9.2e-22   4.1e-18       2     465 ..      73     519 ..      72     530 .. 0.78

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 9.2e-22
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplga.llayllagvviflvmlslgeiatngp.ksggfytyasrflgpelGfviGlnylfswi...tvlalel 94 
                  +++ ++ +++Gtg+f   g++l++ G +g+ l+ + l+g++ ++   +  e+a+++p +sg+  +y ++   +   ++    y ++++   +   +++
   CCE28506.1  73 IIFLNVNQMVGTGVFSTPGIILGATGSVGLaLIYWTLGGLMAIAGFGTYLELASYFPnRSGSEVVYLEQAYPR-PRYFFPVAYAVQSVilsFSSSNAI 169
                  57888999******************999978888889999888888999**************999988754.333334444444441114567888 PP

  AA_permease  95 taasiliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfak 192
                  + + +l  +++ +++ +++ ++++  +++ +++ +v +k++  a  ++ ++kii++i   i g ++l g +p          ++g++f n + +    
   CCE28506.1 170 VLSRYLWRIAGRTPSEWEMKGVAIAAYTLAVLCVIVHNKFSMWAANVFGMLKIITLIFISITGLVVLGGHAPRVP-------HPGANFRNAFEGT--- 257
                  88888888888888888888889999999999**********99999******9999777777666666665555.......9***999999999... PP

  AA_permease 193 eeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlap 290
                    + +  +  s++v +vf++tG+++  ++  E+kdP  s+++  l+ v+ + +++vl  +++ + v+ +  g  +++a +    v f    g   + +
   CCE28506.1 258 --TNNGNDLSSALVSIVFTYTGFSNAFNMVNEIKDPIPSLKRHGLSSVVGVSVLFVLCNVAYFSAVDKSTFGQSKEIAAG----VFFVAVFGPGTAET 349
                  ..5556799******************************************************************99988....77788889999*** PP

  AA_permease 291 linaviltaalssansslysasRvlyslakdglaP..kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaligli.vwlliil 385
                   +n+++l++a++ +++sl+  sR++    ++g++P   +    +  g P+  ++l +++ ++++    ++++a  +f+f++++ ++   +  + +++ 
   CCE28506.1 350 ALNVLVLLSAYGNLLASLIGQSRMIREIGRQGVLPftDFWVTTKPFGTPIGPYALRWLMTFIMI----AAPPAGDAFQFVVSLKTYPEAMfGLAMTLG 443
                  ***********************************98666667778****************99....7777779***********876504555555 PP

  AA_permease 386 sylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyay..ltvkkgpkdwgaasfaaaylivllfliilvg 465
                   y+ +R+     +r++++   k ++++ ++++  ++ +++l++  ++++   ++ +  + w a++ +  + i+ll  +++v+
   CCE28506.1 444 VYI-IRRR----RRRNQLPESKFRVYNVLLVFYNLVQVFLLVM-PWWPPkgGPYAGNVSFWYATYCVTGIGILLLCGLYYVA 519
                  555.5555....4555555566666666655555555554444.44433233333333333333333333344444444444 PP

>> YqjK  YqjK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.025   1.1e+02      26      52 ..      66      92 ..      63      93 .. 0.92
   2 ?    2.7   0.3     0.033   1.5e+02      36      71 ..     188     222 ..     186     223 .. 0.87
   3 ?    4.0   0.0     0.013        60      28      53 ..     420     445 ..     414     453 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.025
        YqjK 26 vDrgwqtlrslrkhlilvsgllallgv 52
                +D gw t+ +l+ + ++++g+++  g+
  CCE28506.1 66 YDVGWVTIIFLNVNQMVGTGVFSTPGI 92
                899******************998776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.033
        YqjK  36 lrkhlilvsgllallgvrrPrrllrwlrrglgawst 71 
                 ++  +i++  l++l ++++ +++++w+  ++g +++
  CCE28506.1 188 MKGVAIAAYTLAVLCVIVH-NKFSMWAANVFGMLKI 222
                 77888999999999*****.999*******999875 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.013
        YqjK  28 rgwqtlrslrkhlilvsgllallgvr 53 
                  ++q + sl++++ +++gl++ lgv+
  CCE28506.1 420 DAFQFVVSLKTYPEAMFGLAMTLGVY 445
                 678999*************9987764 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   2.0      0.13   5.8e+02      21      61 ..     192     232 ..     148     240 .. 0.72
   2 ?    2.7   0.2      0.04   1.8e+02      13      62 ..     213     281 ..     206     289 .. 0.74
   3 ?    6.3   0.0    0.0028        13      36      86 ..     483     540 ..     451     541 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.13
     DUF4231  21 rlitivlgallpilvssklgagvsvlkiltallsalvaila 61 
                 ++++  l++l  i+ ++ +++ ++v+ +l  +  ++++i+ 
  CCE28506.1 192 AIAAYTLAVLCVIVHNKFSMWAANVFGMLKIITLIFISITG 232
                 55666666666666665555555555555555555555544 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.04
     DUF4231  13 akrrfrllrlitivlgallpilvs...................sklgagvsvlkiltallsalvailaa 62 
                 a + f +l++it+++  ++ ++v                    ++++ g ++  +l++++   + +++a
  CCE28506.1 213 AANVFGMLKIITLIFISITGLVVLgghaprvphpganfrnafeGTTNNGNDLSSALVSIVFTYTGFSNA 281
                 678889999*******99999999999988888888887766655666666666666666666666555 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0028
     DUF4231  36 s.......sklgagvsvlkiltallsalvailaaleeffrykerWrryRstaEsLkte 86 
                 +          +++++ ++++++++++l+    ++++ +++  rWr+yR  aE +k++
  CCE28506.1 483 WwppkggpYAGNVSFWYATYCVTGIGILLLCGLYYVAWMHVIPRWRKYRIRAEVVKAQ 540
                 25666655334678888999999999999999999******************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4158.32
//
Query:       CCE28507.1  [L=332]
Description: uncharacterized protein CPUR_02194 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-23   83.7   0.0    4.3e-20   72.0   0.0    2.2  2  adh_short        short chain dehydrogenase
      3e-12   46.6   0.0    8.2e-12   45.2   0.0    1.6  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    4.3e-08   33.3   0.0    6.6e-08   32.7   0.0    1.2  1  KR               KR domain
    1.4e-06   28.0   0.3    6.1e-06   25.9   0.3    1.8  1  Epimerase        NAD dependent epimerase/dehydratase family
      6e-06   25.9   0.6     0.0003   20.3   0.0    2.1  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
     0.0002   21.6   0.0     0.0013   19.0   0.1    2.0  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   1.4e-23   4.3e-20       1     126 [.      32     160 ..      32     171 .. 0.90
   2 !    9.6   0.0   0.00019      0.57     141     191 ..     198     248 ..     194     252 .. 0.90

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 1.4e-23
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfse 95 
                 kv +vtG+ +GIG+++++ l++ +a+v+v++rs++k+ ++++ +k+     + ++ ++++D++d + ++++v++  +k  +ldvLvnNAG+  + p  +
  CCE28507.1  32 KVHIVTGGYAGIGKELVDILYQHNATVYVAGRSQDKATAAMNAIKARhpssKGRLEFLSIDLSDLTTIKQAVQEFTSKESRLDVLVNNAGVM-NPPRGS 129
                 6789*****************************************999877788*************************************4.444444 PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHC CS
   adh_short  96 lseeewervievNltgvflltravlpamlkq 126
                   ++  e  + +N  g+fl t+ +lp ++k 
  CCE28507.1 130 KGKQGHELQLVTNCLGPFLFTKGLLPLLKKT 160
                 444447777889***************9865 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00019
                 SB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short 141 vpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 +++ ++  Y+ sKaa + ++ ++++ +  +gi  +a +PG +++++ +  +
  CCE28507.1 198 EAYYQLKNYGQSKAANNLYAAEFHRRYGGDGILNVAFNPGNLNSELSRYMN 248
                 56788999***********************************99988766 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   2.8e-15   8.2e-12       4     121 ..      41     161 ..      37     185 .. 0.89
   2 ?   -2.0   0.0      0.69   2.1e+03     138     182 ..     203     247 ..     193     255 .. 0.76

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 2.8e-15
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE...E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae...v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                    gIG++++  l ++ a+v ++ +++++  +++++++++++++   +  l +D +d ++++++v+e ++k  +lD+lvnnag++++   p  +  +++
    CCE28507.1  41 AGIGKELVDILYQHNATVYVAGRSQDKaTAAMNAIKARHPSSkgrLefLSIDLSDLTTIKQAVQEFTSKESRLDVLVNNAGVMNP---PRGSKGKQG 134
                   69************************9899999999999855455356*************************************...656778899 PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSCC CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkegg 121
                    +  l +n+ + fl++k +lpl+k+++
    CCE28507.1 135 HELQLVTNCLGPFLFTKGLLPLLKKTA 161
                   9999*****************999883 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.69
                   TTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGS CS
  adh_short_C2 138 ynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgi 182
                    + yg +Kaa +  +  + + +g +gi   a  pg ++ ++++ +
    CCE28507.1 203 LKNYGQSKAANNLYAAEFHRRYGGDGILNVAFNPGNLNSELSRYM 247
                   458999999999999999999999998877888877777666655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   2.2e-11   6.6e-08       2      93 ..      33     124 ..      32     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 2.2e-11
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------ CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr 93 
                 ++++tGG+ g+G+el++ l+++ a ++ + +Rs+ +  ++ + i++ + +   + e++++D+sd + ++++++e++++e+++   ++ Agv++
  CCE28507.1  33 VHIVTGGYAGIGKELVDILYQHNA-TVYVAGRSQDKATAAMNAIKARHPSsKGRLEFLSIDLSDLTTIKQAVQEFTSKESRLDVLVNNAGVMN 124
                 689****************99866.79999***54444444445444433366*************************************986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.3     2e-09   6.1e-06       2     185 ..      35     253 ..      34     273 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 2e-09
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S---HHHHHHSHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrs....alerlfkee.qpdavihlAavggvaassedpa 85 
                 +VtG+   iG+ lv+ l +++ +v +  r +++   a ++ +          e+  +dl d +    a++++ ++e + d+ ++ A+v ++++ s+ ++
  CCE28507.1  35 IVTGGYAGIGKELVDILYQHNATVYVAGRSQDKATAAMNAIKarhpsskgrlEFLSIDLSDLTtikqAVQEFTSKEsRLDVLVNNAGVMNPPRGSKGKQ 133
                 79*********************999999988877777776689********9999999998877779999999999***********99999998876 PP

                 HHHHHHTHHHHHHHHHHH.................HHTCT..EEEEEEE..GGGGTSCSS...SSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH CS
   Epimerase  86 dfieknlqgtlnlleaar.................kagvk..rllflsS..sevYGkdae...qpkeettltgplkpnspYaaaKlageklveayaaqy 160
                     + lq+++n l                            r+l +sS  + v  +       p+   +  + +++ + Y+ +K+a   ++ ++++ y
  CCE28507.1 134 G---HELQLVTNCLGPFLftkgllpllkktaasspP---AsvRVLWASSlgTNVLSPTGGvnlGPDGAPV--EAYYQLKNYGQSKAANNLYAAEFHRRY 224
                 6...55555555555555566666666665544333...155*******888888877775423555555..678************************ PP

                 T...-EEEEEEESEEESTT.S-TTSTTSH CS
   Epimerase 161 g...lnaiilrlfnlyGpr.ngegevsrv 185
                 g   +  +++++ nl ++  ++++++ r+
  CCE28507.1 225 GgdgILNVAFNPGNLNSELsRYMNSPMRM 253
                 83444455666666666666666665554 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     1e-07    0.0003       2      75 ..      36     107 ..      35     111 .. 0.85
   2 !    3.9   0.1    0.0098        29     148     182 ..     201     235 ..     197     258 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1e-07
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevq 75 
                    +TG+   iG  l++ L + + +v++   rs+  +t+ +++++  ++ + +++l++ + Dl+D + ++++++e  
     CCE28507.1  36 VTGGYAGIGKELVDILYQHNATVYVA-GRSQDKATAAMNAIKA-RHPSSKGRLEFLSIDLSDLTTIKQAVQEFT 107
                    9**9999****************975.5666668888888875.4567799*******************9975 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0098
                    ---SHHHHHHHHHHHHHHHHHHHH---EEEEEE-E CS
  GDP_Man_Dehyd 148 yPrsPYaaaKlyadwivvnyreayglfavngilfn 182
                    y    Y+ +K++ +  + ++++ yg   +  + fn
     CCE28507.1 201 YQLKNYGQSKAANNLYAAEFHRRYGGDGILNVAFN 235
                    55677********************9999999998 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   4.5e-07    0.0013       5      75 ..      39     118 ..      35     124 .. 0.87
   2 ?   -0.4   0.0      0.43   1.3e+03      45      81 ..     225     262 ..     208     266 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.5e-07
                      --SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH......TTTCEEEEE--TTTHHHHHHHHHTTS.......SEEEE CS
  Sacchrp_dh_NADP   5 GaGsvGqavaellarhfdvdaeitvadrskeklealaaka......lgvrfeaialdaenyeavLaallkeg.......dlvvn 75 
                      G+ ++G+ +++ l +h+     + va+rs++k+ a+ +++      ++ r+e+ ++d ++ +  ++++++e        d++vn
       CCE28507.1  39 GYAGIGKELVDILYQHNAT---VYVAGRSQDKATAAMNAIkarhpsSKGRLEFLSIDLSDLTT-IKQAVQEFtskesrlDVLVN 118
                      6789************986...**********99999888**********************9.99999998777666666666 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.43
                      TTTCEEEEE--TTTHHHHHHHHHTTS.SEEEE-SSGGG CS
  Sacchrp_dh_NADP  45 lgvrfeaialdaenyeavLaallkeg.dlvvnlsppis 81 
                       g  + ++a+++ n  + L++++++   +++nl  ++s
       CCE28507.1 225 GGDGILNVAFNPGNLNSELSRYMNSPmRMLLNLFCYTS 262
                      566777899999999999****9999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2426.91
//
Query:       CCE28508.1  [L=562]
Description: related to aminopeptidase yscI precursor,vacuolar [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     1e-125  419.9   0.0   1.2e-125  419.7   0.0    1.0  1  Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)


Domain annotation for each model (and alignments):
>> Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  419.7   0.0  6.7e-130  1.2e-125       1     431 [.     110     549 ..     110     550 .. 0.94

  Alignments for each domain:
  == domain 1  score: 419.7 bits;  conditional E-value: 6.7e-130
                    HHHH--SHHHHHHHHHHHHHCTT-EESTTTS-ST..STTCEEEEEEETTTEEEEEEEETTS-GGG--EEEEEE---SEEEEECCEEEE.ETTEEEE CS
  Peptidase_M18   1 finksptpyhvvaevaekllkagfkelsekekwk..iepggkyfvtrngssliAFavgkkykaengfsiigaHtDsptlrvKpkskkk.aegylqv 93 
                    f+ ++pt +h+v++++ kl + gf+e+s ++ w+   +pggky+v+rngssliAF+vg  yk++ng++++++H+D++t r+Kp s++  ++g+ q 
     CCE28508.1 110 FLRENPTVFHAVDYFQTKLNDCGFEEISPRDAWAgkLQPGGKYWVKRNGSSLIAFTVGAAYKPGNGVAMVAGHIDALTARLKPVSTRPsKAGFVQL 205
                    8999*****************************9988************************************************997689***** PP

                    EEEEESS.SSGGGTT--EEEEEEEEECTT--EEEEEECCSTT---BBB----GGG-GG..GSS--TTTTTSEEEEEEEE------TTCCC...... CS
  Peptidase_M18  94 gvetYGggiwetWldrdLsvaGrvlvkkkkeekleaklvnierPvlriPnlaiHLdrdineefkfneetelepilglaeeeeeekedkek...... 183
                    gv++Y gg  +tW drdLs++Grv++++ +++k++ klv+++ P+ +iP+la+H+   +    + n+et+ +p++gl++ +  +++ +e       
     CCE28508.1 206 GVAPYAGGLNQTWWDRDLSIGGRVVLRCPDTGKTSTKLVKLDWPIAKIPTLAPHFGVGM--FGTNNKETQAVPVIGLQSAS-ANHNSQEPlgpega 298
                    ********************************************************996..88999***********8733.22222222445554 PP

                    .T.CCHHHHHHHHHHHHT.S-CCCCCCCEEEEEE-S--EEETTTT-EEEESSHHHHHHHHHHHHHHCCCCHT-TTTS-SEEEEEEESSCCGTS-ST CS
  Peptidase_M18 184 .knkhkkalleliaeelg.vevedivdlelilvdaqkakivGiekeflfaprlDnkvscfaaleallesaedsleeedkvrivalfDnEEvGStsa 277
                      n     l++lia+e+g ++ ++i++ el+l+d+q+a+ +G++ ef++a r+D+k+++++al all+++++  +++  +++valfD+EE+GS+ +
     CCE28508.1 299 fVNTQPRRLVQLIAQEMGiTDYSSIINWELELYDSQPAQTMGMDREFITAGRIDDKLCSWSALMALLAAETN--KDDGYIKLVALFDDEEIGSLLR 392
                    4489999***********556788*********************************************888..88999***************** PP

                    TSGGCTHHHHHHHHHHHHHCSTT...-HCHHHHHC-EEEEE--EE---TTSGGGS-TTTS--TTSEEEEEEETTSSSTT-HHHHHHHHHHHHHHC- CS
  Peptidase_M18 278 qGadsnfleevlerisialkkse...afeeavlakSlliSaDvahaihPnysskheenhapllnkGvvikvnanqryatnsagaallkevaqkanv 370
                    qGa++nfl+ v+er + al+  +    +  +  a+S+l+SaDv+ha hPn+ + + ++haplln+G+ i  ++n +++t+++++++l +va+k + 
     CCE28508.1 393 QGAHGNFLPLVIERTIEALNPDSygpGLLGQTYARSFLVSADVTHAGHPNFMESYLDQHAPLLNVGIAIAADSNGHMTTDAVSTSILTRVAEKIGA 488
                    ******************998885553333445*************************************************************** PP

                    EEEEEEE-TTS----HCHHHHHHHHT-EEEEEE-EEBSTTSSSEEEECCHHHHHHHHHHHC CS
  Peptidase_M18 371 klQelvvrndspcGstigpilaaktGirtiDlGaaqlsmHSireltgskdveeavklfkaF 431
                    k Q +++rnds++G+t+gp+l++ +G+r  D G  qlsmHS+r++tg+ d    v++fk+F
     CCE28508.1 489 KTQMFQIRNDSRSGGTVGPMLSSAMGVRAADAGLTQLSMHSVRATTGALDPGLGVQFFKGF 549
                    ************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4368.34
//
Query:       CCE28509.1  [L=1056]
Description: related to SYG1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-98  328.6  35.1    5.8e-98  328.3  35.1    1.1  1  EXS              EXS family
    1.6e-80  271.9   9.7    1.6e-80  271.9   9.7    2.3  2  SPX              SPX domain
  ------ inclusion threshold ------
      0.054   13.6   0.0       0.12   12.5   0.0    1.5  1  FUR              Ferric uptake regulator family
       0.14   12.4  14.9      0.041   14.1  10.2    2.2  2  RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc3
       0.24   10.8   9.3       0.49    9.8   9.3    1.4  1  SDA1             SDA1
       0.26   11.0  11.4       0.68    9.6  11.4    1.7  1  Cwf_Cwc_15       Cwf15/Cwc15 cell cycle control protein
        1.4    8.9   5.9        4.2    7.4   5.9    1.7  1  RXT2_N           RXT2-like, N-terminal
        3.7    7.1   7.9        9.8    5.7   7.9    1.7  1  PPP4R2           PPP4R2
        5.4    6.3  12.7        9.4    5.5  12.7    1.3  1  NOA36            NOA36 protein
        9.1    5.8   5.8         15    5.1   5.8    1.2  1  GCIP             Grap2 and cyclin-D-interacting


Domain annotation for each model (and alignments):
>> EXS  EXS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.3  35.1  3.2e-101   5.8e-98       2     331 .]     528     853 ..     527     853 .. 0.96

  Alignments for each domain:
  == domain 1  score: 328.3 bits;  conditional E-value: 3.2e-101
         EXS   2 plpyrvlllvvlglllwalnlhvlsklginyalifeldprsslsyrqlyelaalllllllllllllllsaevd.alellplllllllllllllplnily 99 
                 +++y +++l++l+l+l+++n++v+++ +iny++ife+d+rs l++r+l  ++++++lll+++++++++++ +   + ++p++l+ +++ ++++p + l+
  CCE28509.1 528 MQIYAGYFLMLLMLFLFCVNCFVWTRNKINYPFIFEFDQRSMLDWRRLAVFPSFFFLLLGIFMWMNFSRFGAGwLYIYYPVFLISITVGIIFVPGPYLC 626
                 789*****************************************************************777764677********************** PP

         EXS 100 rssrrrflrtllrillaplapvefadfllaDiltSlakvlgDlaltvclyasswseedrkcgss.svvvplllslPyliRfrQclreyrdtkkr.phll 196
                 ++sr++f+++ +r+lla+l+pvef+df+l+D+++Sl++++++++l++clya++w+e +++c+ss s ++ ++l+lP ++R++Qclr+yrdt++  phl+
  CCE28509.1 627 YKSRKWFIYAHWRLLLAGLYPVEFRDFFLGDMYCSLTYAMANIELFFCLYANHWNE-PQQCNSSnSRLLGFFLTLPPIWRLFQCLRRYRDTRNVfPHLV 724
                 *******************************************************9.****888555666***************************** PP

         EXS 197 NalKYatafpvivlsalqrlsksdesestlrvlwllaalvnslysfiWDvtmDWgLlkllksknwflRdellypkkwvYylaivldlvlRftWslklss 295
                 N +KY+++++++v+ +l+r+++++    +  +l++ ++++ns+y +iWD++mD++Ll + +++++ lRd l+++++w Yyl++ +d +lRf+W++++++
  CCE28509.1 725 NGGKYVMTIVAAVMLSLYRINHTT----SNLALFIGFSVINSVYVSIWDLFMDFSLL-QTDTRHRALRDILALKRQWPYYLIMTIDPILRFAWIFYAIF 818
                 *******************99999....8889*************************.777789**********************************9 PP

         EXS 296 hlhsiqeselgvfllellEvlRRwvWvffRvEnEhv 331
                 + h+ q+s+l++f+++l+E+lRR++W ++RvEnEh+
  CCE28509.1 819 T-HNTQHSALVSFFVSLVEILRRAMWALLRVENEHC 853
                 9.9999*****************************7 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.9   9.7   8.7e-84   1.6e-80       1     383 [.       1     434 [.       1     435 [. 0.86
   2 ?   -6.7   9.4        10   1.8e+04      63     133 ..     889     956 ..     855    1017 .. 0.48

  Alignments for each domain:
  == domain 1  score: 271.9 bits;  conditional E-value: 8.7e-84
         SPX   1 MKFakeLeenlvpEWrdaYldYkqLKKlIkkvqrele..slgleaetlrellnrpedskkksse...rtepstsaaadesgnsaadasssepkdeae.. 92 
                 MKFak+Le+++vpEWr +Yl+Yk++KK I +v+r+++    g +++t + ++nr+ +  +++++    ++p + ++ +++++ +  ++ss p++e+   
  CCE28509.1   1 MKFAKQLERDAVPEWRIKYLNYKAGKKRIQAVSRAINrtPKGYSNRTPKGYSNRTPSFFRTNQYdrtLDQPYSIPSPAPASSPKYGDESSVPRSEPIav 99 
                 **********************************77745567777777777777777777777788833333333333333333444444444455477 PP

         SPX  93 .slprrsplsrssrssssygglvssppsansssssddssesnpa...................................................dsss 139
                  s+ ++ +  +s+ ++++yg++v++pp  ++  + +d++++++a                                                   + s 
  CCE28509.1 100 gSKANEAEALHSDGNDLQYGSFVPTPPAYSPLRDRSDDKKQDFAlpapaieapdspqlarptetmqregnriplrrrsteeftpgtaasdreargPFSP 198
                 788888888899*********************************************************************************998888 PP

         SPX 140 sssssesesssssspsllrrlfsesesreeksersyetrplr..........aekeFferLdseLnkvetFykakeeefterlesLrkqlealrprrik 228
                 ss+++++++++++s+s+lrr++s+++s++  ++r+ + r+ +          +++eFf+++dseL+kve Fyk ke+++ erl  Lr+ql+++r+rri 
  CCE28509.1 199 SSRQPNAKPTTTDSQSQLRRILSHTHSHTLGPKRRDTARLDSagsdfdlireRKREFFDFMDSELDKVEAFYKLKEDQAGERLSLLRQQLHEMRNRRIH 297
                 88899999999999999999*9977777777777777655558888889999*********************************************** PP

         SPX 229 eaeerksdlyrwreifglksveaqvfessreldrgelseeardkevseelekngwikptksklekkr.neralekvkpektlkaf......ldsvrrdy 320
                 e ++r          ++++++  +  e+++ +d+                  ngw +p+k+k ++++ n++al +++++ +l+        +++  rdy
  CCE28509.1 298 ELSHR----------QHAHADGGPCPEGDNPNDGV-----------------NGWVQPIKAKMFPPGpNSKALRNMATTPRLQSMasanvsAHDAARDY 369
                 88777..........67777999999999999996.................5***********************84444444456666799999*** PP

         SPX 321 lrk..enrvklkkakkklkkafvelYrgLelLKsYqeLNrtAFrKIlKKfDKvtaltaskrymke 383
                 +r+  + +v++++ak+klk a++e+YrgLelLKsY+ LNrtAFrK++KKfDK+ +++++ rym+ 
  CCE28509.1 370 TRRrkKEDVSYRTAKRKLKMALQEFYRGLELLKSYALLNRTAFRKLNKKFDKAAHARPPLRYMND 434
                 ***************************************************************85 PP

  == domain 2  score: -6.7 bits;  conditional E-value: 10
         SPX  63 rtepstsaaadesgnsaadasssepkdeaeslprrsplsrssrssssygglvssppsansssssddssesn 133
                  ++p+++   ++++ +++d+++++ +    + +++    +ss   s+ gg v++ +++ s+ s ++   + 
  CCE28509.1 889 PSPPPPPLLPPREEEEEEDQEANRRRG---EVNPSAAEGSSSAVASALGGTVRRRTESASGRSFSKILAEA 956
                 222222222222222222222222211...22223333334444444444444444444444444444444 PP

>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.9e-05      0.12      26      74 ..     375     423 ..     367     428 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.9e-05
                 HHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESS CS
         FUR  26 aeevykelkeedpeislaTVYrtLklleeaglvkelefedgesryelak 74 
                  e+v  +  +++ ++ l   Yr L+ll++  l++++ f++ +++++ a+
  CCE28509.1 375 KEDVSYRTAKRKLKMALQEFYRGLELLKSYALLNRTAFRKLNKKFDKAA 423
                 689999999************************************9874 PP

>> RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.59   1.1e+03      31      73 ..     190     232 ..     165     257 .. 0.74
   2 ?   14.1  10.2   2.3e-05     0.041     149     214 ..     905    1003 ..     879    1005 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.59
  RNA_pol_3_Rpc31  31 dtapselfPplslpvakplteeersqvslyrklreqihdgpfy 73 
                       +a  +  P+   p akp+t++ +sq+ + +++ ++   gp  
       CCE28509.1 190 REARGPFSPSSRQPNAKPTTTDSQSQLRRILSHTHSHTLGPKR 232
                      3456677788899**************9999999988888866 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.3e-05
  RNA_pol_3_Rpc31  149 eikgkskkkk.......................eadeedeegkelleklkelaeeeddee..............ekkekedeeeeeeeeedd 203 
                       e+++++++++                        +++e+++g++  + l e    ++d+                   ke  +e+e+e+ed+
       CCE28509.1  905 EEDQEANRRRgevnpsaaegsssavasalggtvRRRTESASGRSFSKILAE--AHKQDFVkrrmpgmsageqggG--IKEGSDEDEDEDEDE 992 
                       333444444456666666666666666666665333444444444444442..1222222455666666655332..3333444445799** PP

  RNA_pol_3_Rpc31  204 efddddedggD 214 
                       ++dddd+d++D
       CCE28509.1  993 DYDDDDDDDDD 1003
                       ***99997555 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   9.3   0.00027      0.49      90     175 ..     901    1022 ..     862    1042 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00027
        SDA1   90 eeeedsddeddeedwevesddds.....eedseggwidvesdee...........................................eieesdesed 138 
                  eeee++d+e + +  ev+ +  +                +s                                                e sde+ed
  CCE28509.1  901 EEEEEEDQEANRRRGEVNPSAAEgsssaV----------ASALGgtvrrrtesasgrsfskilaeahkqdfvkrrmpgmsageqgggIKEGSDEDED 987 
                  45555566677777777664433222231..........2222233444444558899999999999999999999999999999975666776777 PP

        SDA1  139 eeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeek 175 
                  e+e+e+ ++++++++++e     +  ++ e+e+e ++
  CCE28509.1  988 EDEDEDYDDDDDDDDDDEVVA--QAGRDAEAEAEADA 1022
                  777777666666666666655..44455554444332 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  11.4   0.00038      0.68      62     151 ..     906    1008 ..     897    1048 .. 0.43

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00038
                  HHHHHHHHH-----------...............--------------------------..-----------------.........-------- CS
  Cwf_Cwc_15   62 eaeakakkrkkaeleaeeee...............ekekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeee.........eesdddsd 134 
                  e ++++++r++   +++++e               +         ++e+++ r+ +++l+ea++ d  +++    ++ e+         e++d+d+d
  CCE28509.1  906 EDQEANRRRGE--VNPSAAEgsssavasalggtvrR---------RTESASGRSFSKILAEAHKQDFVKRRMPGMSAGEQgggikegsdEDEDEDED 991 
                  22222222222..22222223344443322222221.........2223333333334444333332222222222222245555554444444555 PP

                  ----------------- CS
  Cwf_Cwc_15  135 sdsdddddedetaeLlr 151 
                  +d ddddd+d+++e ++
  CCE28509.1  992 EDYDDDDDDDDDDEVVA 1008
                  55555555555555544 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.9    0.0023       4.2      54      83 ..     974    1012 ..     938    1024 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0023
      RXT2_N   54 k...kekekeekeeeeedeegdeededdddee......e 83  
                  +    ++ ++e+e+e+ede+ d++d+dddd+e      +
  CCE28509.1  974 QgggIKEGSDEDEDEDEDEDYDDDDDDDDDDEvvaqagR 1012
                  355422233334444444444444444444445544331 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.9    0.0055       9.8     241     275 ..     955    1005 ..     874    1021 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0055
      PPP4R2  241 ekdesvkvee........................kdddeeddeedtdyveeeeddesed 275 
                  e        +                         +d++ed++ed+dy+++++dd++ +
  CCE28509.1  955 E--------AhkqdfvkrrmpgmsageqgggikeGSDEDEDEDEDEDYDDDDDDDDDDE 1005
                  2........13333333466777777777666556677777777777766544443333 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  12.7    0.0053       9.4     273     299 ..     979    1005 ..     940    1021 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0053
       NOA36  273 gdedddddddeedddeeeddedeeeee 299 
                   +  d+d+d++ed+d+++dd+d++++e
  CCE28509.1  979 KEGSDEDEDEDEDEDYDDDDDDDDDDE 1005
                  222233333333333333333322222 PP

>> GCIP  Grap2 and cyclin-D-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   5.8    0.0081        15     145     163 ..     984    1010 ..     953    1043 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0081
                  ....S-------------........- CS
        GCIP  145 edeeedededdldddede........e 163 
                  ede+ededed++ddd+d+         
  CCE28509.1  984 EDEDEDEDEDYDDDDDDDdddevvaqA 1010
                  344444444444444443223366330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1056 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1201  (0.0669864); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.92u 0.27s 00:00:01.19 Elapsed: 00:00:00.41
# Mc/sec: 7824.26
//
Query:       CCE28510.1  [L=938]
Description: uncharacterized protein CPUR_02197 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-06   28.3   0.8      3e-06   27.0   0.8    1.7  1  gag_pre-integrs  GAG-pre-integrase domain
    0.00015   21.9   0.1    0.00059   20.0   0.0    2.0  2  rve              Integrase core domain
  ------ inclusion threshold ------
        0.1   12.1   0.3       0.23   11.0   0.3    1.5  1  ArfA             Alternative ribosome-rescue factor A
       0.14   12.3   3.5       0.77    9.9   3.5    2.3  1  Integrase_H2C2   Integrase zinc binding domain


Domain annotation for each model (and alignments):
>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.8   6.7e-10     3e-06      14      64 ..     465     518 ..     458     519 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 6.7e-10
  gag_pre-integrs  14 svslsknkssinlWHrRLGHpsfsrlkkLfk..kgllpglkisk.sevCeaCql 64 
                      ++++  +++++++ HrR+GHps++rl+ L +  ++ ++  +i+k  ++C++Cq+
       CCE28510.1 465 AAVCHLSETEMRRLHRRFGHPSVKRLTALLDraRETVDDETIQKiTKHCHHCQI 518
                      345666899*********************86667799999999888*****96 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1   4.8e+03      56      87 ..     476     513 ..     458     521 .. 0.58
   2 !   20.0   0.0   1.3e-07   0.00059      16     117 ..     543     644 ..     534     646 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
         rve  56 eravarfggve..pervlsDngseytsk....afrefl 87 
                 +r  +rfg+     ++ l D+++e ++     ++++ +
  CCE28510.1 476 RRLHRRFGHPSvkRLTALLDRARETVDDetiqKITKHC 513
                 33444444444555566788888888775444444444 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1.3e-07
         rve  16 ripdgggkayllvvvddfsrlilaealsde..mdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdnGkvErfh 112
                 +i + + +  +l+vvd+++ +  a +l+ +  ++a+++ al e+ ++   g  p+ ++ D g+ ++s +fr  ++ l i+++  ++   ++ GkvEr h
  CCE28510.1 543 DILQVD-ERPVLHVVDAATSFQAARFLKPQgqKAADVWNALRECWIDTHLGP-PDWIVHDAGKNFASAEFRHSARLLAINIDEVPVEADHSIGKVERYH 639
                 444444.45577899************9987566666666666666666666.********************************************** PP

         rve 113 rtlkd 117
                 + l++
  CCE28510.1 640 GPLRR 644
                 *9987 PP

>> ArfA  Alternative ribosome-rescue factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   5.2e-05      0.23      21      35 ..     917     931 ..     914     933 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.2e-05
        ArfA  21 kLFrqrvekakKGKG 35 
                 +LFr+r++++ KGKG
  CCE28510.1 917 RLFRSRIVREVKGKG 931
                 59************* PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.5   0.00017      0.77       9      55 ..     474     519 ..     469     522 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00017
  Integrase_H2C2   9 ilkeaHdsagHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrr 55 
                      ++++H   gH+++++ +++l r       +++++k+ k+C+ Cq +
      CCE28510.1 474 EMRRLHRRFGHPSVKRLTALLDRARETVD-DETIQKITKHCHHCQIN 519
                     5899*************999977666655.9**************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (938 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6647.88
//
Query:       CCE28511.1  [L=269]
Description: uncharacterized protein CPUR_02198 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-09   36.0   0.1    1.5e-08   35.4   0.1    1.3  1  Metallophos    Calcineurin-like phosphoesterase
    8.8e-06   26.0   0.1    0.00051   20.3   0.1    2.1  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   1.7e-12   1.5e-08       5     203 ..       6     229 ..       3     230 .. 0.60

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.7e-12
                  EEESBTB.TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTSCHHH.HHHHHHHHHHHHHHHHEHH. CS
  Metallophos   5 vigDlHl.algggqlddllkllddllreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHegfee.ellnkygylgifsepwrsd. 98 
                  +++DlHl +  g++l+d+ +          p+l l +GD+ +  +   ++ ++  ++l+++ + v +++GNHe  +e  +++  + l +f + +++d 
   CCE28511.1   6 IVSDLHLeSPKGYDLYDIPAKA--------PYLAL-LGDIGNVVPHKDDFFDFlARHLGRF-KAVLFVPGNHE-AYEaTWKETMAVLREFEDKIERDs 92 
                  7899995555555555555544........44444.6**6666666666666633333333.559********.677777777777777766666665 PP

                  ........................HCEEETSEEEEEETTE...EEEEEEESECEEETHHHHHHHHHHHSCHHHHCC.HHHHHH....HHHHTTCSEEE CS
  Metallophos  99 ........................aevfnnlplaslgsgs...lkvlllhGgspellvsldklgslnleleapepg.dewlkd....lekrekadwvi 164
                                          ++ f+++p  s +      ++          +  ++++++  +++   ++++   wl+      e+ + a  +i
   CCE28511.1  93 slgqfavldrgmfrppgcdtvilgCSLFSHVPQESQMAVEmglND----------F-FQIQDWTVADHNE--AHSRdLAWLNAevarIEDQGSATNII 177
                  555555666555666666666666666666666663333222211..........1.1222222222222..22224888888999966666666666 PP

                  EEESSESS............CSSSCSCCHHHHH.HHHHHTTESEEEEESSSS CS
  Metallophos 165 vlgHsply............rgsgylfgdeale.dllkkygvdlvisGHtHv 203
                  +l+H  ++            ++++  f+ + l  + +   +v+++ +GHtH 
   CCE28511.1 178 ILTHWSPSrsrdttdprhrgSRISSGFSTDLLSeRCFASAKVKVWAFGHTHY 229
                  66666666599999999988556666666666536699999**********5 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   5.7e-08   0.00051       3     134 ..       4     237 ..       3     249 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 5.7e-08
  Metallophos_2   3 laiiSDlHsnldaleavlealkevgvdaiihaGDleeeep......evleellela.....pvlaVrGNnD......................... 62 
                    + i+SDlH +      ++++ +++   ++ ++GD++++ p      ++l++           vl V+GN++                         
     CCE28511.1   4 IQIVSDLHLESPKGYDLYDIPAKA--PYLALLGDIGNVVPhkddffDFLAR----HlgrfkAVLFVPGNHEayeatwketmavlrefedkierdss 93 
                    569*****8888888889998888..********94444444333333333....234447*****************999999999999999999 PP

  Metallophos_2  63 .............................................eevveedvlreaaelgtdl..peeaelelagek.....vlliHgdpl.... 102
                                                                  ++ +++v+++++ +++dl   ++++  ++++      + l+H +p+    
     CCE28511.1  94 lgqfavldrgmfrppgcdtvilgcslfshvpqesqmavemglndfFQIQDWTVADHNEAHSRDLawLNAEVARIEDQGsatniIILTHWSPSrsrd 189
                    999999999999999999999999999999999999999988644222788889999999999954233333342222457889999999889988 PP

  Metallophos_2 103 ..............gvkdalaellke....aeegsdvvvcGHtHvp...evek 134
                                    + +l     +    a+++++v ++GHtH     e+e+
     CCE28511.1 190 ttdprhrgsrissgF-STDLL----SercfASAKVKVWAFGHTHYNcdvEMER 237
                    888888877555532.22222....2344457888899999999876554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2033.85
//
Query:       CCE28512.1  [L=255]
Description: uncharacterized protein CPUR_02199 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1964.72
//
Query:       CCE28513.1  [L=375]
Description: uncharacterized protein CPUR_02200 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2967.04
//
Query:       CCE28514.1  [L=620]
Description: related to chromatin assembly complex, subunit p90 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-22   78.0   2.7    4.4e-22   78.0   2.7    3.4  2  CAF1A           Chromatin assembly factor 1 subunit A
  ------ inclusion threshold ------
      0.074   12.8  43.7       0.21   11.3  43.7    1.7  1  CAF-1_p150      Chromatin assembly factor 1 complex p150 subu
       0.12   12.3  14.6       0.25   11.3  14.6    1.6  1  FAM60A          Protein Family FAM60A
       0.54    9.0  26.9       0.82    8.4  26.9    1.2  1  Mitofilin       Mitochondrial inner membrane protein
        2.6    6.7  13.9        5.1    5.8  13.9    1.4  1  SAPS            SIT4 phosphatase-associated protein
        6.3    5.9   8.9         11    5.1   8.9    1.4  1  Zip             ZIP Zinc transporter
        6.8    4.8  31.4       0.35    9.0  19.1    2.2  2  Nop14           Nop14-like family
        9.1    6.0  26.8       0.69    9.7  20.7    2.1  2  RR_TM4-6        Ryanodine Receptor TM 4-6
        9.7    5.3  18.6         17    4.5  18.6    1.4  1  Sin_N           Sin-like protein conserved region


Domain annotation for each model (and alignments):
>> CAF1A  Chromatin assembly factor 1 subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -13.0  16.7         9   1.8e+04      48      67 ..     166     185 ..     122     200 .. 0.64
   2 !   78.0   2.7   2.2e-25   4.4e-22       1      73 [.     349     424 ..     349     427 .. 0.89

  Alignments for each domain:
  == domain 1  score: -13.0 bits;  conditional E-value: 9
       CAF1A  48 eeeeeeegedleseedeeee 67 
                 + +++ee + ++ e+ +e++
  CCE28514.1 166 KRKQKEEEDRIKAEQRDEKK 185
                 22223344555544444444 PP

  == domain 2  score: 78.0 bits;  conditional E-value: 2.2e-25
       CAF1A   1 KllqFyedvRPpYyGTwtkkskvvg.......arnPfskdekeldYdyDSdaEWeeeeeeegedleseedeeeeeeddde 73 
                 K++ F++dvRPpYyGT+t k+ ++g       ar+P  ++ ++l+YdyDS+aEW+e   eeged++ e+deeee +d+d+
  CCE28514.1 349 KVIAFSQDVRPPYYGTVTLKPYALGrnrmhqlARRPN-TRCLPLEYDYDSEAEWQE---EEGEDVDMEDDEEEELDDEDN 424
                 89****************99999989999999****9.77788***********87...58*****99999998877765 PP

>> CAF-1_p150  Chromatin assembly factor 1 complex p150 subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  43.7    0.0001      0.21      38     141 ..     123     220 ..     112     233 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
  CAF-1_p150  38 kkrlkeekkeekerakeearrkkeeekekkekerrekkekdekekaeklrlkeekrkeklea....leakleekrkkeeek.rlkeeekrikaekaeit 131
                 +k +ke++ +ek++ +ee+  kk  e           k k+e eka + + +e+krk+k e      e + e krkkeee+ r++ee++r    + ++ 
  CCE28514.1 123 EKVAKEKEVAEKRKEREEQAAKKAAE-----------KVKQEEEKAARAKEREDKRKQKEEEdrikAEQRDEKKRKKEEEQrRIQEEKERKARSQPKLN 210
                 23333333333333333333333333...........4455556666666666666666553111123667899***9986268888888777788899 PP

  CAF-1_p150 132 rflqksktqq 141
                  f++ + t +
  CCE28514.1 211 AFFKIPSTTK 220
                 9998887765 PP

>> FAM60A  Protein Family FAM60A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  14.6   0.00013      0.25      82     178 ..     111     215 ..     106     282 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
      FAM60A  82 gpglk..slaklkkk.ekke...sskkieekfekklkkkkklkktkakasdasssereaspassdsasedsdes..edeeekkrkkllekkkkrsaekl 172
                 gpg k  +l+ + k  ++ke   ++k+ ee+++kk+ +k k++++ka+ ++ ++++r+++ ++++ ++e+ de+  ++eee++r + ++++k+rs++kl
  CCE28514.1 111 GPGPKrkRLTAVEKVaKEKEvaeKRKEREEQAAKKAAEKVKQEEEKAARAKEREDKRKQKEEEDRIKAEQRDEKkrKKEEEQRRIQEEKERKARSQPKL 209
                 555443344444333222222235666666666666666555555555555566666666666655444444440044445555566667788888999 PP

      FAM60A 173 vsfldl 178
                 + f++ 
  CCE28514.1 210 NAFFKI 215
                 999875 PP

>> Mitofilin  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  26.9   0.00041      0.82      44     231 ..      22     243 ..      19     289 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00041
   Mitofilin  44 eevvdylleedpplae......klkeisklqvsavsevtkeskepkeekkkeks..ekqssassevaeeeaeatkkaaeaka................. 117
                  +vv+ +++ d  +++      + + + + qv++ +++  + + p +++ +     ++ s+++s+ ++++  +  k+ + ++                 
  CCE28514.1  22 GTVVKVVDDADATTPKafslqpTGDSLLPPQVQSDAQSSPKLGSPAPNPASPFTpsKATSDKPSDGKNTPGTVSPKTNAVASssglcqggpgpkrkrlt 120
                 566777777775555566676677777777777777777777777777776665323336666666666666666666655588899999999999999 PP

   Mitofilin 118 .......qqpkseqekekaleevlkealskaekataaakeakd..eakkavkeavdklkeasdteeksrekardtaleaaeaaaek.eleklkeviela 206
                        +  + ++++++++e+++k+a++k+ + +++a++ak+  +++k+ +e+ +++ e+ d++++++e+++   +e +e++a++ ++ ++  +i   
  CCE28514.1 121 avekvakE-KEVAEKRKEREEQAAKKAAEKVKQEEEKAARAKEreDKRKQKEEEDRIKAEQRDEKKRKKEEEQRRIQEEKERKARSqPKLNAFFKIPST 218
                 99988742.333344444444444444444444444444444311566777777777788888888888888888888899999888677777777777 PP

   Mitofilin 207 kqseeeaakplldaaeetleklieh 231
                 ++se+ ++++   +a+ ++ k ie+
  CCE28514.1 219 TKSESHSTSDVGSPAQNRPTKPIEK 243
                 8888888888888888887776643 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  13.9    0.0026       5.1     265     354 ..     128     215 ..      86     221 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0026
        SAPS 265 eealedvsdeaskeesaesedltdkdedvsleesksakd....enkesdesesdtaeesseededdasseesalaeeteeklrkkpvvGDlLKi 354
                 e+++ ++       +++e++  +++ e+v++ee+k+a++    ++++++e+e+  + e+ +e++ ++++e+   +ee+e k r++p    ++Ki
  CCE28514.1 128 EKEVAEKR------KEREEQAAKKAAEKVKQEEEKAARAkereDKRKQKEEEDRIKAEQRDEKKRKKEEEQRRIQEEKERKARSQPKLNAFFKI 215
                 22222222......22222222222333333333333222222344555666666666667777777777778899999999999999999998 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   8.9    0.0057        11      97     172 ..     133     218 ..     118     289 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0057
         Zip  97 tmivekksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadsk.eelrngkqeksesekeqas.........e 172
                 +  +e+++++ +k  +k +++++++a++k+ +++  +++ee++ ++++ d+++++k ee+r+ ++ek+ ++ +q++         +
  CCE28514.1 133 EKRKEREEQAAKKAAEKVKQEEEKAARAKEREDKRKQKEEEDRIKAEQRDEKKRKKeEEQRRIQEEKERKARSQPKlnaffkipsT 218
                 33444444445555555555555555555555555555555544444444444433033344444444444444445555555550 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  19.1   0.00017      0.35     360     455 ..     123     221 ..      79     238 .. 0.55
   2 ?    1.4   4.4     0.035        70     368     400 ..     399     426 ..     389     477 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00017
       Nop14 360 dlveseseeeeeeeeedeeeeedeeeee.eeeededdlsdlese..eeeeedeleeelleeekkaaeekkekk.kkkkkseekakeelpytfpcPeshe 454
                 ++v++e+e+ e+ +e +e+ +++  e+  +eee+ + +++ e++  ++eeed ++ e+ +e+k+++ee+++ + +++k+ +++++ +l   f++P++ +
  CCE28514.1 123 EKVAKEKEVAEKRKEREEQAAKKAAEKVkQEEEKAARAKEREDKrkQKEEEDRIKAEQRDEKKRKKEEEQR-RiQEEKERKARSQPKLNAFFKIPSTTK 220
                 33444444433222222222222222111222222222222222214444444333333333333333333.357788888888899999999999876 PP

       Nop14 455 e 455
                  
  CCE28514.1 221 S 221
                 5 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.035
       Nop14 368 eee.eeeeedeeeeedeeeeeeeeededdlsdle 400
                 +e  eee+ed + e+deeee       dd+++++
  CCE28514.1 399 AEWqEEEGEDVDMEDDEEEE------LDDEDNMD 426
                 11111222222222222211......11111222 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  20.7   0.00035      0.69      78     166 ..     127     208 ..      97     259 .. 0.58
   2 ?   -1.0   0.3      0.61   1.2e+03     108     125 ..     403     420 ..     383     452 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00035
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXX-HHH CS
    RR_TM4-6  78 aeesptpelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkakskkkeeaeaeesellkk 166
                  e++   ++k+k+    e++ +k+++e+ ++e+e++a a+++e ++k+ke  ee++ ++e+  ekk kk++++++ +e++++++    k
  CCE28514.1 127 KEKE--VAEKRKER---EEQAAKKAAEKVKQEEEKAARAKEREDKRKQKE--EEDRIKAEQRDEKKRKKEEEQRRIQEEKERKARSQPK 208
                 1111..23333333...333333444444444433333333333333333..3333333333333333333333333333333333334 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.61
                 XXX.XXXXXXXXXXXXXX CS
    RR_TM4-6 108 aeaeekadaengekeeke 125
                 +e+ e+ d+e+ e+ee +
  CCE28514.1 403 EEEGEDVDMEDDEEEELD 420
                 111122333333322222 PP

>> Sin_N  Sin-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  18.6    0.0084        17     153     251 ..     125     217 ..     113     279 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0084
       Sin_N 153 skaeneeq.deeeeeakavtvkfkraeterqkkareqSyallkkkeeeEpWiklevheqesseseaerqklfkqttasetvtelslspkeylealvdpe 250
                   +e+e   + +e e +a++ ++++ ++e++k+ar +  + ++k++eeE  ik e  ++++ ++e e+++  ++++ ++       +++  l+a+++ +
  CCE28514.1 125 VAKEKEVAeKRKEREEQAAKKAAEKVKQEEEKAARAKEREDKRKQKEEEDRIKAEQRDEKKRKKEEEQRRIQEEKERKA-------RSQPKLNAFFKIP 216
                 222222222455555677777778888899999999999*****************99888888888888888765544.......3333333333333 PP

       Sin_N 251 e 251
                 +
  CCE28514.1 217 S 217
                 3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3007  (0.167717); expected 358.6 (0.02)
Passed bias filter:                      935  (0.0521501); expected 358.6 (0.02)
Passed Vit filter:                       367  (0.0204696); expected 17.9 (0.001)
Passed Fwd filter:                        95  (0.00529868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.39u 0.34s 00:00:01.73 Elapsed: 00:00:00.47
# Mc/sec: 4001.58
//
Query:       CCE28515.1  [L=888]
Description: related to glucan 1,4-alpha-glucosidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 6411.60
//
Query:       CCE28516.1  [L=407]
Description: uncharacterized protein CPUR_02203 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-16   58.4   0.0    2.5e-15   56.8   0.0    1.7  2  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase
     0.0095   15.7   0.1      0.041   13.7   0.1    2.0  1  RVT_3     Reverse transcriptase-like


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   2.8e-19   2.5e-15     112     233 ..       2     125 ..       1     134 [. 0.88
   2 ?   -1.8   0.0      0.21   1.9e+03      61      90 ..     305     334 ..     289     340 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 2.8e-19
       RVT_2 112 vykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegklivalyvddlliagsdi..kiledvkkelakkfklkdlgkvskfLGieia 208
                 +++L ++lyGl+ +p lW+e++ +v+++lg+ +s+ e  l+     +  +++  +vdd++ia ++   +  +++   l + f+l d g+v+ fLGi++ 
  CCE28516.1   2 CVELLRALYGLQDSPALWFEELCSVFRELGLIQSKEEPCLFYSE--DRTIFLIFFVDDIIIAYQEEseEAAQKIFAGLHQAFELDDKGEVKYFLGIQVL 98 
                 78999************************************877..788************9876511556778899*********************9 PP

       RVT_2 209 q..eaggiklsladyiakvvkkfeltd 233
                 +  ++  i ls ++yi ++++kf  ++
  CCE28516.1  99 RdpSTRRIFLSHEAYIRRLAEKFPQSG 125
                 9667888999***********997655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.21
       RVT_2  61 dsvrLllalaaeeelvvhqldvdsafLnae 90 
                 +++rL+l  +   +  + ++d++  +L+ e
  CCE28516.1 305 QTIRLVLNESERINTRLRHVDIHNMWLKQE 334
                 579999999999999999999999999876 PP

>> RVT_3  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   4.6e-06     0.041       8     100 ..     232     334 ..     223     354 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.6e-06
       RVT_3   8 kksgaggagvvirdsnGevllagaeklqgkasveeAElqALlrGLqlalkl..........girrlvvegDsktvvqllngrekvksselanlldeirk 96 
                 +++++++ g+++    G +++ ++++ + ++s++eAEl+AL + ++ a++l          + +  vv +D+k+ ++l+ +++++ + +l+++  + ++
  CCE28516.1 232 NETRRSSQGYLFTLFGGPIMWKATRQPTVTTSSTEAELLALQQTVKEAMSLvrlfkdlkfdTEEDMVVHCDNKQTIRLVLNESERINTRLRHVDIHNMW 330
                 6678888999999999999999999989999*****************987332222221122446666666666677666666666666665555555 PP

       RVT_3  97 llks 100
                 l ++
  CCE28516.1 331 LKQE 334
                 5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3321.00
//
Query:       CCE28517.1  [L=1286]
Description: related to nik-1 protein (Os-1p protein) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-20   74.1   0.1    2.2e-20   73.2   0.1    1.5  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
      2e-17   63.4   0.0    4.3e-17   62.3   0.0    1.6  1  Response_reg  Response regulator receiver domain
    3.6e-09   36.5   0.2    9.8e-09   35.1   0.2    1.8  1  HisKA         His Kinase A (phospho-acceptor) domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.1   3.7e-24   2.2e-20       4     111 ..     775     898 ..     772     899 .. 0.86

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 3.7e-24
                 HHHHHHHHHHHHHHHHHHSTTTEEEEEEEE........EE...........TEEEEEEEESSSSSTTHHHT.GTCSTTCHHCSTCHTSTSSSHHHHHHH CS
   HATPase_c   4 krLrqiisnlvdNavkfatkageieveika........se...........ddlvisveDnGiGipkedlk.klfekfsqddstkrggggtGlGlsivk 82 
                   Lr++i nl++N++k+ t+ g ++v++++        s             +++++v+D+G+G+++e l+ +lf +fsq   ++r + g+GlGls+vk
  CCE28517.1 775 GALRRVIMNLLGNSLKY-TTRGFVRVSLSQrqaivpcsSRirartrvhrdvRTVRLTVSDSGKGMTEEFLQsHLFVPFSQ---EDRLSPGVGLGLSLVK 869
                 689**************.88999999888765555554104445556667899******************99*******...778899********** PP

                 HHHHHTTTEEEEEEETTTEEEEEEEEESS CS
   HATPase_c  83 klvelmgGeiwvesepgrGttftftlple 111
                 k+v+ +gG+i v+s+ g Gtt+ ++lple
  CCE28517.1 870 KIVSGLGGRIMVQSSRGNGTTISVELPLE 898
                 *9999**********************97 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   7.2e-21   4.3e-17       2     111 ..    1165    1280 ..    1164    1281 .. 0.94

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 7.2e-21
                    EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH..ESEEEEESSCSSSEHHHHHHHHHHCT.....TTSEEEEEESSTSHHHHHHH CS
  Response_reg    2 livdDdplvrellrqlleeegyeevaeaedgkealellkeek..vdlillDinmpgmdGlellkeireed.....pelpviiltahseeedavea 89  
                    l+vdD+p+++++l+++l++ g    +++ +gkea++ +++ +  +  i++D++mp m+G+e+   ir+++     +++ + +lt+ ++ e  +ea
    CCE28517.1 1165 LVVDDNPINLKILSSCLQKMGH-LHDAVCNGKEAVHAFRRGAgaYKGIFMDLSMPVMSGFEASCLIRQHEkeaklETCTIFALTGLASAEAQQEA 1258
                    8********************9.889************888778*************************977777779***************** PP

                    HHCTESEEEESSG-HHHHHHHH CS
  Response_reg   90 lkagaddflsKpfdpeeLlkal 111 
                    + +g+d fl+Kp++ +eL++ l
    CCE28517.1 1259 FACGIDLFLTKPVRLKELRQVL 1280
                    ******************9976 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.2   1.6e-12   9.8e-09       2      65 ..     585     647 ..     584     648 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.6e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrie 65 
                 + ++l++++HELr PL+++ + +++L ++ +l+  +ke+l+t+e ++r l++ v+ lL  ++i 
  CCE28517.1 585 RMDMLSSLSHELRSPLHGLVLGVDMLHDT-ALDRLQKEFLNTVETCGRTLLDTVDHLLHWAKIN 647
                 6799**********************996.9999************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.23s 00:00:01.01 Elapsed: 00:00:00.39
# Mc/sec: 9907.54
//
Query:       CCE28518.1  [L=286]
Description: related to lysophospholipase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-20   72.8   0.0    9.6e-14   51.7   0.0    2.2  2  Abhydrolase_2  Phospholipase/Carboxylesterase
     0.0063   16.0   0.0     0.0096   15.4   0.0    1.2  1  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   1.1e-17   9.6e-14       4     140 ..       6     155 ..       3     160 .. 0.80
   2 !   19.0   0.0   1.1e-07     0.001     154     215 ..     200     262 ..     189     264 .. 0.86

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1.1e-17
                    EEEE--SS---EEEEEE--TT--S.........HHHHHHHH.TT--TTEEEEEE---EEE-GGGTT-EEE-SS-B--SSTTS...-B-HHHHHHHH CS
  Abhydrolase_2   4 aevvspkdkaqavviflHGlGdsg.........hawaeaakteaalpnikfifphgpelpvtlnggmrmpaWfdlvglspek...kedeagikksa 87 
                    ++++ +k++++++v+flH  Gd++          + + + +    +p + ++fp++ e  +   +g +  +Wfd+ +l++ +   + +  g  +s+
     CCE28518.1   6 PVIIPAKEAHSHTVVFLHDRGDNAeslsmslrrSLDSRQRSLYDVFPTFRWVFPRSGETVSFSAAGNMVSQWFDIWNLQDYSdreEIQTLGLRNST 101
                    68999*******************6644433322223333444568999*********99999999999******9999887542334558899** PP

                    HHHHHHHHHHHHTT.--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES--- CS
  Abhydrolase_2  88 ekleelidaelkkg.ipssriiigGFSqGaalalylaltlpkklggivafsgal 140
                    + + +++ +e +      +rii+ G +qGaa a++  l l+   +g  ++s ++
     CCE28518.1 102 TLIRQILAVEADLLgGRWDRIILAGIGQGAATAIHVLLNLRVSRSGPASVSNTA 155
                    ******999999865788********************9998877777766655 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.1e-07
                    GGG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--SS-.-HHHHHHHHHHHHH CS
  Abhydrolase_2 154 tkklpilqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaHsi.deeemqdikeflkk 215
                     +k+p+l++H  +D+v+p+ +g  +   l+ +  +ve + y  + H   ++  m +++++l+ 
     CCE28518.1 200 IRKTPVLLGHYVDDQVIPVEHGRVLRDTLQGFGAQVEWREYATGRHWLhSPSGMDEAADYLNH 262
                    369***************************************999976256778888888875 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-06    0.0096     137     192 ..     196     251 ..     173     265 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-06
                   GGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSH CS
  Peptidase_S9 137 ldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkpr 192
                   +d v +++p+Ll h   D+ +p++++  l ++Lq  g +v+++ +   +H++ +p+
    CCE28518.1 196 TDTVIRKTPVLLGHYVDDQVIPVEHGRVLRDTLQGFGAQVEWREYATGRHWLHSPS 251
                   4555589********************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2097.82
//
Query:       CCE28519.1  [L=72]
Description: uncharacterized protein CPUR_02206 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 596.06
//
Query:       CCE28520.1  [L=297]
Description: uncharacterized protein CPUR_02207 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-07   29.2   0.0    1.9e-06   28.0   0.0    1.6  1  NMT1            NMT1/THI5 like
    4.7e-05   23.1   0.0    8.4e-05   22.3   0.0    1.4  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
    7.4e-05   22.3   0.0    0.00064   19.2   0.0    2.2  1  SBP_bac_3       Bacterial extracellular solute-binding protei
  ------ inclusion threshold ------
      0.047   14.1   0.0      0.081   13.3   0.0    1.3  1  NAPRTase_N      Nicotinate phosphoribosyltransferase (NAPRTas
      0.079   12.4   0.0       0.13   11.7   0.0    1.3  1  NMT1_3          NMT1-like family
      0.097   11.9   0.0       0.65    9.2   0.0    2.0  1  DUF3834         Protein of unknown function (DUF3834)


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   6.3e-10   1.9e-06      15     216 .]      21     233 ..      17     233 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 6.3e-10
                 HHHHT..TEEE.EEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHH.TT--....EEEEEEEE-S--EEEE.EECCC-.-SSGGGGTTSEEEE-S-TT CS
        NMT1  15 YFkee..GldV.eivepadpsdatelvasgkadfgvsyqesllaara.kglp....vvsvaallqeplsgli.vlkdsg.ikspkDLkGkrigyvgspf 103
                 YF++e  Gld   i  p+++++ ++++ +g+ d+++  +e  +a    +g++     + v++++++pl   i + ++++ i+s+++LkG +ig++  + 
  CCE28520.1  21 YFAKEhfGLDAvLIPFPSGTGHMVTAIRAGEIDVAIGLTEGWIAGLGkEGIEgdggYRLVGTYVDTPLCWAIsTGAKRPdITSIASLKGTKIGVSRIGS 119
                 66666446775256678************************998776455542333789********9755515667779******************* PP

                 HHHHHHHHHHHTT-......-GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT--.---SEEEEEEHHHHHH-HHHH CS
        NMT1 104 ekallkallakdgg......dpsdvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvp.dyyslvlitnekllkenpelv 195
                 +++++  +la + g      ++sd  ++++ + +l +a+ +g++D+ +     we ++ ++   + +i  + d+  p    ++v  t+ +  ++ +  v
  CCE28520.1 120 GSYVMGFVLADQQGwlaenvSFSDTVVLQN-FENLRNAVNSGEADFFM-----WEHFTSKKYYDSGEIRRVGDIYTPwSSWKIVASTKLASGSTLDSRV 212
                 *********988777777668888888777.999999*********99.....8888888888888888888887765555555555555555666777 PP

                 HHHHHHHHHHHHHHHHSHHHH CS
        NMT1 196 kkFlrAlkkGyeyalahPeea 216
                 k + + l +G+    ++ +ea
  CCE28520.1 213 KTLFEKLDQGIRHFNENQDEA 233
                 777777777777777777776 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.8e-08   8.4e-05      40     199 ..      41     204 ..      23     251 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.8e-08
                     HHHHHHHHTTS-SEEE--HHHHHH.....HHHHS.-EEEEEEEEETT--SEEEEEEEEETTSS.--SHHHHGG-EEEE--TT-TTTTHHHHHHTC CS
  Phosphonate-bd  40 aavvealragqvDiaflgplayvq.....ardqa.gveplatrvrsdGsasyrsviivradsd.iqsledLkgktiafvspsStsGylvpaalLv 127
                      ++v a+rag++D+a   +++ ++       + + g+++++t v+    + +  +i ++a ++ i+s++ Lkg +i++      sG++v    L 
      CCE28520.1  41 GHMVTAIRAGEIDVAIGLTEGWIAglgkeGIEGDgGYRLVGTYVD----TPLCWAISTGAKRPdITSIASLKGTKIGVSRI--GSGSYVMGFVLA 129
                     679999*******99999999998544443445546888888887....788888888888766*************9665..5688999999*9 PP

                     CCCT--HHH..HSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-HHHH........TTEEEEEEEEEEE--EEEEE CS
  Phosphonate-bd 128 keagldped..dfsevfsgshdaavlavlsgdadaaavsadaledlvaegpedk........delrviassppipndpvvvr 199
                     +++g   e+  + ++v  ++ ++   av sg+ad      ++ +++ ++g++ +        ++ +++as+++       ++
      CCE28520.1 130 DQQGWLAENvsFSDTVVLQNFENLRNAVNSGEADFFMWEHFTSKKYYDSGEIRRvgdiytpwSSWKIVASTKL-------AS 204
                     ****9777532566669********************************988778555555555555555544.......33 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.1e-07   0.00064      50     171 ..      43     180 ..      22     233 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.1e-07
                 HHHHHHTTSSSEEESSEB-......-HHHHTT........EEEESESEEEEEEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSH...........HHH CS
                 xxxxxxxxxxxxxxxxxxx......xxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxx RF
   SBP_bac_3  50 lipalksgkvDiaiaaiti......tpeReek........vdFsqpyfsagqvllvrkkdaskissiksladLkgkkvgvqagst...........aee 123
                 +++a+++g++D+ai+ +t             k        +++   y ++++  ++ +++  k+++i+s+a+Lkg+k+gv++  +           ++ 
  CCE28520.1  43 MVTAIRAGEIDVAIG-LTEgwiaglG-----KegiegdggYRLVGTYVDTPLCWAISTGA--KRPDITSIASLKGTKIGVSRIGSgsyvmgfvladQQG 133
                 566666666666663.3332222221.....12333444477777899999999999753..6799**************9976645566666555444 PP

                 HHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 124 llkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknp 171
                 +l+e+     ++v+ ++ e++ +a+++g++d ++ +  + + + +  +
  CCE28520.1 134 WLAENVS-FSDTVVLQNFENLRNAVNSGEADFFMWEHFTSKKYYDSGE 180
                 5555443.66778899999**************988888777766655 PP

>> NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.7e-05     0.081      38      97 ..     213     269 ..     206     290 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.7e-05
  NAPRTase_N  38 yaivagleevieylenlrfteeeieyLkrklpyfkedfleyLrtfrfkpsevaveeeevv 97 
                 ++++++l++ i+++++   ++e ++y++++l+y ++d  e+L+t++f +++  v+ e vv
  CCE28520.1 213 KTLFEKLDQGIRHFNE--NQDEAVKYISTELGYTEPDAREWLKTVKFPSQTEGVKDE-VV 269
                 5678888888888876..46999*************************999998877.33 PP

>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.2e-05      0.13      40     143 ..      39     141 ..      34     169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
      NMT1_3  40 GsveNiqllkkgeadlailqsdvayeAyeGegefegkkplknlraitmlyaevfqlvvs...kdsgigsiadlkgkrvsvGpegsGtegsarailealg 135
                 G+++ + ++++ge+d+ai     +  A  G++  eg+     +r ++++  +++ +++s   k+ +i+sia lkg++++v + gsG+ + +  + +  g
  CCE28520.1  39 GTGHMVTAIRAGEIDVAIGLTE-GWIAGLGKEGIEGD---GGYRLVGTYVDTPLCWAIStgaKRPDITSIASLKGTKIGVSRIGSGSYVMGFVLADQQG 133
                 7788899999999999985543.34577788888886...46799999999999998765558889**********************99999999999 PP

      NMT1_3 136 lsekdlkl 143
                 +  ++++ 
  CCE28520.1 134 WLAENVSF 141
                 87777664 PP

>> DUF3834  Protein of unknown function (DUF3834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00022      0.65     150     185 ..     209     244 ..      99     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00022
     DUF3834 150 keneeefidaYeeGIelikedpeeaaeyiaskLpik 185
                  +  +++ ++  +GI+ ++e+ +ea +yi+ +L  +
  CCE28520.1 209 DSRVKTLFEKLDQGIRHFNENQDEAVKYISTELGYT 244
                 445677889999******************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1989.04
//
Query:       CCE28521.1  [L=455]
Description: uncharacterized protein CPUR_02208 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-12   46.0  30.4    1.2e-08   35.2   2.3    3.1  3  EamA      EamA-like transporter family
      1e-09   38.1   3.2    1.2e-09   37.8   0.4    2.7  2  DUF3955   Protein of unknown function (DUF3955)
    4.4e-07   29.4   1.0    4.4e-07   29.4   1.0    2.2  2  PUNUT     Purine nucleobase transmembrane transport
    7.6e-05   22.4  13.1    0.00012   21.7  13.1    1.3  1  SLC35F    Solute carrier family 35
    8.6e-05   21.9  12.2    8.6e-05   21.9  12.2    1.7  2  UAA       UAA transporter family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.6     0.013        47       2      46 ..      74     121 ..      73     131 .. 0.77
   2 !   35.2   2.3   3.4e-12   1.2e-08      76     137 .]     206     267 ..     183     267 .. 0.93
   3 !   17.3  13.3   1.1e-06     0.004       2     136 ..     291     432 ..     290     433 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.013
        EamA   2 lgillallaalfwaiyfvlskillrkv...spltltfvrfliagilll 46 
                 lgi+l+l+ +++w ++ +l+  +++++    p++l+   + + +i ll
  CCE28521.1  74 LGICLLLVTVFLWTLSNFLASSIFSDHtydKPFFLVYANSSVFAISLL 121
                 79*************999997776666566677666666666666665 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 3.4e-12
        EamA  76 vlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllill 137
                 +la+++    l++ts++ ++++ts++ ++tl++++l+  e++++++l+g++ +l+G++li++
  CCE28521.1 206 FLANYFASACLEYTSVASVTILTSTSSAWTLVFGALFRVETFSVRKLIGVMASLVGIVLIST 267
                 8999999****************************************************986 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 1.1e-06
        EamA   2 lgillallaalfwaiyfvlskillrkvspl.tltfvrfl..iagillliiallkegkl....aklslkdwllllllgllgtvlafllffyalkktsasn 93 
                 +g+ +a+ +a+++++y +++k+ + + + + + +f+ ++  +  +ll ++ ++ +++     + ++  ++  ++++  +++++  +++  a+  t++ +
  CCE28521.1 291 IGDAMAFFSAIMYGLYVTVMKRRVGNEDKVdMRLFFGLVgtFNLLLLWPLFFILDWTSiepfEMPPTAAVVTVIVVNSVASFVSDICWAFAMLLTTPLV 389
                 6899*****************99999988854444444322444444444555555545556888888888888888899999**************** PP

        EamA  94 aslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 +++ +sl+  ++li  ++ +g+  ++  ++g+++++++ ++i+
  CCE28521.1 390 VTVGLSLTIPLSLIGEMVQYGQYSSFVYWIGAAVVFVSFVFIN 432
                 **************************************99986 PP

>> DUF3955  Protein of unknown function (DUF3955)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.4   3.3e-13   1.2e-09       3      58 ..      73     128 ..      71     129 .. 0.95
   2 ?   -1.9   0.2      0.83     3e+03       4      20 ..     253     269 ..     251     274 .. 0.53

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 3.3e-13
     DUF3955   3 iigllllllgiilliisnisgsyvdedGiLhEPFfLipiGylllligiislvival 58 
                 ++g+ lll+ ++l+++sn+  s++ +d ++ +PFfL++ +   ++i+++  +++++
  CCE28521.1  73 TLGICLLLVTVFLWTLSNFLASSIFSDHTYDKPFFLVYANSSVFAISLLPRFYRYC 128
                 699**********************************************9998876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.83
     DUF3955   4 igllllllgiilliisn 20 
                 ig++  l+gi+l+ +  
  CCE28521.1 253 IGVMASLVGIVLISTVD 269
                 45555555555555444 PP

>> PUNUT  Purine nucleobase transmembrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   1.0   1.2e-10   4.4e-07      68     184 ..     188     311 ..     177     336 .. 0.88
   2 ?   -2.9   3.0      0.83     3e+03     257     288 ..     360     391 ..     356     436 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.2e-10
       PUNUT  68 slslkklvllyivlGllvavdnllyslgllylpvstfslilatqLaFtaifsalinkqkftrfiinsvvlltisaallalssssdkpaees.......k 159
                 +ls+++  +l++   +l ++ n++ s  l y +v  ++++++t+ a+t +f al+    f +  ++ v+   ++++l+++ + s++ +e+         
  CCE28521.1 188 RLSFRETGVLSLEFSMLWFLANYFASACLEYTSVASVTILTSTSSAWTLVFGALFRVETFSVRKLIGVMASLVGIVLISTVDLSGESDENRgsfphktP 286
                 6677788888899999*****************************************************999999999987777777666555555447 PP

       PUNUT 160 kkyvigfiltlaasllfaLlLslve 184
                 ++ +ig +++++++++++L++ +++
  CCE28521.1 287 SQIAIGDAMAFFSAIMYGLYVTVMK 311
                 899*****************99997 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.83
       PUNUT 257 vGavgLvflvSslfsnvistvllpvvsvlavi 288
                 v +v +v +v+s +s+++ + ++ ++  l+v 
  CCE28521.1 360 VVTVIVVNSVASFVSDICWAFAMLLTTPLVVT 391
                 55566777888888888888777776655554 PP

>> SLC35F  Solute carrier family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7  13.1   3.3e-08   0.00012      84     295 ..     206     429 ..     195     433 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3.3e-08
      SLC35F  84 veanylvvkayqytsltsvqlldcfaipvvlvlswlflkvryrlvkiigvvvcilGvvllvvsdvlagrransg.......snpvlGdllvlaGatlya 175
                   any+      yts+ sv++l + + +  lv+  lf    + + k+igv++ ++G+vl+ + d+   + +n g       s+  +Gd + +  a +y+
  CCE28521.1 206 FLANYFASACLEYTSVASVTILTSTSSAWTLVFGALFRVETFSVRKLIGVMASLVGIVLISTVDLSGESDENRGsfphktpSQIAIGDAMAFFSAIMYG 304
                 569***********************************************************999776655555122222256789************* PP

      SLC35F 176 vsnvleeylvkklslvellgllglfGai...isaiqlailerkelkaihW..daeiallfvgfalvlfllysllpilikktsatsvnlslltsdlysll 269
                 +  ++    v + ++v++  ++gl G++   +     +il+  +++  +   +a ++ + v  +++ f+     +  +  t+  +v+++l  +   sl+
  CCE28521.1 305 LYVTVMKRRVGNEDKVDMRLFFGLVGTFnllLLWPLFFILDWTSIEPFEMppTAAVVTVIVVNSVASFVSDICWAFAMLLTTPLVVTVGLSLTIPLSLI 403
                 *99999999988777776666666555411155567899999999865541166666666777777776555555555556666777777555667999 PP

      SLC35F 270 iglflfhykvswlyllafvviliGli 295
                   +  +++  s +y +  +v+ + ++
  CCE28521.1 404 GEMVQYGQYSSFVYWIGAAVVFVSFV 429
                 99999999999999999999988876 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.3   1.1e+03     152     183 ..      72     103 ..      68     126 .. 0.64
   2 !   21.9  12.2   2.4e-08   8.6e-05      69     297 ..     202     430 ..     199     435 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.3
         UAA 152 fllGiallvlallldavlglvqeklykkygkh 183
                  +lGi+ll+++++l  + + +  ++++ +  +
  CCE28521.1  72 RTLGICLLLVTVFLWTLSNFLASSIFSDHTYD 103
                 57888888888888887777777777754433 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 2.4e-08
         UAA  69 valffitsvlnnealkydisvPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdkkedskesl.nkfllGiallvlallld 166
                 ++l f+ +      l+y  sv   +i+ s++   +++ G+l+   ++s+++ + v+   +G+++ + ++ + ++++++ s+  k+   ia+     +++
  CCE28521.1 202 SMLWFLANYFASACLEY-TSVASVTILTSTSSAWTLVFGALFRVETFSVRKLIGVMASLVGIVLISTVDLSGESDENRGSFpHKTPSQIAIGDAMAFFS 299
                 678899999999*****.********************************************9999887766644444443144555666666666777 PP

         UAA 167 avl.glvqeklykkygkhsk.ealfyshllslplflllqgellsavkflsesedvallslpsklfylllnvltqyvcikgVlilisefgaltvtlvltl 263
                 a++ gl+   + ++ g++ k ++ ++  l+++  +lll+  ++  + +  + e++++   +  ++++++n+++++v+       +  ++ l+vt+ l+l
  CCE28521.1 300 AIMyGLYVTVMKRRVGNEDKvDMRLFFGLVGTFNLLLLWPLFF--ILDWTSIEPFEMPPTAAVVTVIVVNSVASFVSDICWAFAMLLTTPLVVTVGLSL 396
                 7765778888888899988889989889999988888887666..4555566666667888899999*****999987777777777888999999999 PP

         UAA 264 RKfvslllSillFknpltlqhlvgtllVflglll 297
                    +sl+  ++ +++  ++ +++g+++Vf++ + 
  CCE28521.1 397 TIPLSLIGEMVQYGQYSSFVYWIGAAVVFVSFVF 430
                 999999999*********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3352.22
//
Query:       CCE28522.1  [L=436]
Description: uncharacterized protein CPUR_02209 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-07   31.2   0.0    3.6e-07   30.2   0.0    1.6  1  Heme_oxygenase  Heme oxygenase


Domain annotation for each model (and alignments):
>> Heme_oxygenase  Heme oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0     2e-11   3.6e-07       3     199 ..      18     256 ..      16     262 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2e-11
                     HHHHHHHHTHHHHHHHHTSHHHHHHHTT...SS-HHHHHHHHHHHHHHHHHHHHHHHH..CTTST.........TCGGGS-GGG--HHHHHHHHH CS
  Heme_oxygenase   3 lakeLreaTkdvHneaenlvfvkeflkg...svdkeaYkkllanlyelykalEeelee..nkdsp.........viapilfpeLhRkaaLerdla 83 
                     la+ +  aT+  H+++++l   + +l++     +  aY+  l ++  +y+ +E++  +  ++++p         +++++ +p L R + Le d++
      CCE28522.1  18 LAESITLATRPIHAKLNKLIITRLPLALpplATNSLAYASGLMHIAPIYSTFETAWSDilHESDPskvspevlkALDSLHLPGLMRADRLEADIQ 112
                     67788888899999999988888888753225777789988888999999999886542222221111111111345678899************ PP

                     HHHS...TTHHHHS--...-HHHHHHHHHHHHHHHH-GGGHHHHHHHHHHHHHHHHHHHHH.......................HHHHHHT-SSS CS
  Heme_oxygenase  84 ylyg...sdwrkdiei...spavqkyverlekiaaeepellvAhaYtrylgdLSGGqllkk.......................iaaralelpee 149
                        g   +  r++++    +  +++ v +++   +++p+ l+A++Y   ++   GG  ++                            +   ++ 
      CCE28522.1 113 SMMGwtqAATREQLNRvceTGHLEEFVSHIRRAISSKPHVLLAYSYILFMALFAGGRYMRAtlesagedfwqrvpsspdsqhgnE---KSTTEQC 204
                     *999322222333322111335688999*****************************99999***************99986431...2222222 PP

                     SSSGGGGH-TTSSSHHHHHHHHHHHHH..CS---HHHHHHHHHHHHHHHHHH CS
  Heme_oxygenase 150 ceatafyefesisdrkvfkqeYreaLd..slelddearaavveeAreaFrln 199
                     +  ++f++f+  +d +  ++ ++++L+  ++ l+ ++++ +v+eA   F+  
      CCE28522.1 205 GMPLRFFHFDTPLDGEDLRRDFKQRLAdaEISLSYQEKHDIVQEAICIFENL 256
                     356889999998877777888888886125678899999******9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3060.15
//
Query:       CCE28523.1  [L=749]
Description: related to lethal(2) denticleless protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-10   40.0  15.2     0.0042   17.9   0.4    6.8  7  WD40         WD domain, G-beta repeat
    1.4e-05   25.3   0.1       0.26   11.6   0.0    4.8  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2      0.06   5.4e+02       4      35 ..     276     312 ..     273     313 .. 0.78
   2 !   13.1   0.0   1.6e-05      0.14       8      37 ..     336     366 ..     330     367 .. 0.88
   3 ?    3.1   0.0     0.022     2e+02       9      38 .]     380     413 ..     374     413 .. 0.92
   4 ?   -2.8   0.1       1.7   1.5e+04      16      32 ..     422     436 ..     419     440 .. 0.61
   5 !    7.6   0.0   0.00084       7.6      12      38 .]     467     496 ..     454     496 .. 0.79
   6 ?    0.9   0.0      0.11   9.7e+02       8      35 ..     518     549 ..     512     552 .. 0.78
   7 !   17.9   0.4   4.7e-07    0.0042       7      37 ..     681     711 ..     674     712 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.06
                 EEEEESS.SS...E.EEEEEETTSSEEEEEETTSEEE CS
        WD40   4 lrtltGH.ss...v.tslafspdgawlasGsdDgtvr 35 
                 ++++t+H +    +  sla sp  +  a G++ g vr
  CCE28523.1 276 VHHCTAHvGEgetIpFSLASSPTDSTTAIGDESGFVR 312
                 79*****844689989***999988866787777776 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.6e-05
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 + H + + +l+fs+dg  la++s D+t ri 
  CCE28523.1 336 KVHdNAIMDLDFSQDGYRLATASGDRTSRIV 366
                 579888**************9988***9985 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.022
                 SS.SSEEEEEEETTSSE...EEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgaw...lasGsdDgtvriWd 38 
                 GH +s + +af+p +a    la++++ g v +Wd
  CCE28523.1 380 GHwDSLRQVAFQPGKASgfgLATSDRAGRVQLWD 413
                 99999***********9*9999999999999998 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 1.7
                 EEEETTSSEEEEEETTS CS
        WD40  16 lafspdgawlasGsdDg 32 
                 lafs+ g +  sGs D+
  CCE28523.1 422 LAFSSRGGL--SGSSDR 436
                 667777777..786443 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.00084
                 SEEEEEEETTSSE..EEEEE.TTSEEEEEE CS
        WD40  12 svtslafspdgaw..lasGs.dDgtvriWd 38 
                 svt++++ p+g+   l+++s  + ++++Wd
  CCE28523.1 467 SVTAIQWLPSGREhlLLTASeANASIKLWD 496
                 49***99999999765688735*******9 PP

  == domain 6  score: 0.9 bits;  conditional E-value: 0.11
                 ESSSS....EEEEEEETTSSEEEEEETTSEEE CS
        WD40   8 tGHss....vtslafspdgawlasGsdDgtvr 35 
                 t H++     tsla + d + l + ++D t++
  CCE28523.1 518 THHTWrsygLTSLALNTDASRLYAVCKDSTIY 549
                 4554455679************98899*9996 PP

  == domain 7  score: 17.9 bits;  conditional E-value: 4.7e-07
                 EESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   7 ltGHss.vtslafspdgawlasGsdDgtvriW 37 
                  +GHs  vt +++s+dg+++ ++sdD  vr W
  CCE28523.1 681 VRGHSReVTNVSWSRDGDLV-TASDDYWVRRW 711
                 47**557************8.6888*999988 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   2.9e-05      0.26      35      80 ..     336     381 ..     293     392 .. 0.79
   2 ?    1.5   0.1     0.041   3.7e+02      41      89 ..     419     473 ..     404     474 .. 0.68
   3 !    3.6   0.0    0.0095        85      29      67 ..     458     497 ..     453     508 .. 0.73
   4 ?   -2.1   0.0      0.54   4.8e+03      42      66 ..     528     552 ..     521     562 .. 0.83
   5 ?   -2.5   0.0      0.71   6.4e+03      50      70 ..     612     632 ..     609     643 .. 0.64
   6 ?    2.2   0.0     0.025   2.3e+02      37      54 ..     684     701 ..     677     713 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.9e-05
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  + +d+ + +L +++dg  La a  d + r++d+ +  v  +l +++
   CCE28523.1 336 KVHDNAIMDLDFSQDGYRLATASGDRTSRIVDVVTSSVAVELAAGH 381
                  568999*****************************99998887765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.041
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek......avtclgW 89 
                   + La++  g l   +  d+++ ++ ++s +++ + +    +      +vt ++W
   CCE28523.1 419 MSTLAFSSRGGLSGSSDRDTTIDIVAVNSVNTIDNAHERIVQgvkssaSVTAIQW 473
                  5677888888888888888888888888877776654433333344446777777 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.0095
  ANAPC4_WD40  29 vwtleedkedsevrsLaWkpdgk...lLavaysdgevrllda 67 
                  ++++   k++ +v++++W p+g+   lL  + ++ +++l d 
   CCE28523.1 458 IVQG--VKSSASVTAIQWLPSGRehlLLTASEANASIKLWDT 497
                  5555..688999******999865545556666778998876 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.54
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlld 66 
                  +sLa + d + L  +++d+++  ++
   CCE28523.1 528 TSLALNTDASRLYAVCKDSTIYAYS 552
                  7899999999999999999987776 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 0.71
  ANAPC4_WD40  50 gklLavaysdgevrlldaesg 70 
                   +lLav+ +++   l+   ++
   CCE28523.1 612 SELLAVGSANNCAILFPTDEK 632
                  578999988886666555544 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.025
  ANAPC4_WD40  37 edsevrsLaWkpdgklLa 54 
                  +++ev++++W+ dg l  
   CCE28523.1 684 HSREVTNVSWSRDGDLVT 701
                  6789**********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 5680.05
//
Query:       CCE28524.1  [L=385]
Description: uncharacterized protein CPUR_02211 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-15   55.2   0.0    5.2e-13   48.5   0.0    2.2  2  GATase_4  Glutamine amidotransferases class-II
    1.5e-08   34.9   0.0    3.9e-08   33.6   0.0    1.7  2  GATase_6  Glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   5.8e-17   5.2e-13      23     152 ..      38     175 ..      23     197 .. 0.75
   2 !    4.6   0.0    0.0014        13     217     253 ..     267     304 ..     241     320 .. 0.81

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 5.8e-17
    GATase_4  23 aarggltdahadGwGiafye....gkaarvfkdpepsaesplaelvreypiksknvvaHiRkatqGevklenthpFvRelwgrewifAHnGdlke...y 114
                  +r+g+  + adG+Gi+fy     g a  +f+   p+ + +  + + + +  s+++  H+R  t+G+ +++n+hpF+      + ++ HnG l +   +
  CCE28524.1  38 DTRRGQ--NNADGFGIGFYTdpklGSAPCLFTSTVPAWNCTNLHRIAS-KTASRLIFGHVRATTEGSLSEDNCHPFTH----ASLMWMHNGGLGGwkyI 129
                 456666..799*********8887788889999999988654333333.489************************86....467788*****654435 PP

    GATase_4 115 kpkl.....egrfePv.GsTDsElafCelleelasrf..ekaepsa 152
                 k kl     ++ +  v G TD+E+af  +l++l++    ++++p++
  CCE28524.1 130 KRKLcdrlaDKWYLQVkGGTDTEWAFALFLDTLERLGhdPSSAPEM 175
                 55558877755565555****************9876222344444 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0014
    GATase_4 217 ttkedrvavvatepLt.rdetWkklepGellvfrdGal 253
                 +++   +++v++epLt + e+W +++  ++l++++ ++
  CCE28524.1 267 KDRGADIVLVTSEPLTfERENWVNVPTNSILTIHRQTV 304
                 445567899*******8889*****9999888776555 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   4.3e-12   3.9e-08       5      85 ..      80     166 ..      76     188 .. 0.82
   2 ?   -2.8   0.0      0.77   6.9e+03      50      81 ..     190     219 ..     189     231 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 4.3e-12
    GATase_6   5 glaslvedevalaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynyk....elreelpalkglafrsrsDtevllall....eelG 85 
                 ++as + ++++++HvR  ++g   e+ ++Pf  +   l+ +hNG    +k    +l ++l+++  l++++ +Dte  +al+    e+lG
  CCE28524.1  80 RIASKTASRLIFGHVRATTEGSLSEDNCHPF--THASLMWMHNGGLGGWKyikrKLCDRLADKWYLQVKGGTDTEWAFALFldtlERLG 166
                 677788899*******999999866666***..*****************66666677777777777***********99866665555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.77
    GATase_6  50 iynykelreelpalkglafrsrsDtevllall 81 
                 i++ +el +  p+ ++l+ ++++Dt  ll+ +
  CCE28524.1 190 ISQINELTDSIPQ-DILQ-NEDVDTRSLLNFA 219
                 6777888888888.7777.7899999888743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2997.50
//
Query:       CCE28525.1  [L=168]
Description: uncharacterized protein CPUR_02212 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1284.73
//
Query:       CCE28526.1  [L=365]
Description: uncharacterized protein CPUR_02213 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-06   26.2   5.5    1.6e-05   24.9   5.5    1.7  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   5.5   8.8e-10   1.6e-05       3      38 ..      35      71 ..      32      73 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 8.8e-10
                -HHHHHCT.---STSSSS-HHHHHCTHHHCCCCTCCC CS
     Zn_clus  3 CdnCrkkK.vKCdakkPaCsnCkklnleCtfysessk 38
                C +C+k+  vKCd+++P Cs+C + + eC+ y+ + +
  CCE28526.1 35 CFTCSKRSgVKCDRRRPYCSQCLEIGDECSGYKTQLT 71
                8889877449********************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2649.28
//
Query:       CCE28527.1  [L=93]
Description: uncharacterized protein CPUR_02214 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.2   0.2      0.018   14.9   0.2    1.1  1  RD3       RD3 protein


Domain annotation for each model (and alignments):
>> RD3  RD3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.2   9.9e-07     0.018      31      74 ..       3      46 ..       1      51 [. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.9e-07
         RD3 31 lewqvkeaereqrekeeeerkaetgvDYswlastprkrkqisas 74
                l++ +k   r+ r+ e+++r ++t+ + +wla ++r+ + i  +
  CCE28527.1  3 LKVSLKVSSRQSRQDETDRREQQTRWNRRWLAGGSRAGEPIRVK 46
                77889999**************************9988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 723.30
//
Query:       CCE28528.1  [L=106]
Description: uncharacterized protein CPUR_02215 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       175  (0.00976072); expected 358.6 (0.02)
Passed bias filter:                      153  (0.00853366); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 775.10
//
Query:       CCE28529.1  [L=863]
Description: related to aspartic-type signal peptidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-55  187.5   0.4    3.9e-55  187.5   0.4    1.8  2  Asp       Eukaryotic aspartyl protease
    2.5e-08   34.3   0.4    2.5e-08   34.3   0.4    3.7  3  TAXi_N    Xylanase inhibitor N-terminal
  ------ inclusion threshold ------
      0.067   13.0   0.0       0.21   11.4   0.0    1.8  1  TAXi_C    Xylanase inhibitor C-terminal
        6.9    6.6  13.0         13    5.7  13.0    1.4  1  TFIIA     Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   0.4   8.7e-59   3.9e-55       2     312 ..      66     383 ..      65     386 .. 0.86
   2 ?   -3.5   1.8       1.2   5.3e+03      47      69 ..     463     485 ..     424     517 .. 0.64

  Alignments for each domain:
  == domain 1  score: 187.5 bits;  conditional E-value: 8.7e-59
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHC...HHTSS-B-GGG-TT-EEEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckkssa...ckshstydpskSstykkngkslsisYGdgsvsGflsqdtvkvggltvknqefgeatkep 97 
                 Y +e+++Gtp+q  +v fDTGS++lW+  + +k ss+   c+s+  ++   S ty +++ +  i+YG+g ++  +++d v++g+  + +q fg at  +
  CCE28529.1  66 YSIELQVGTPPQPVSVNFDTGSAELWINPVCSK-SSDpasCQSYGRFNG--SQTYVDTNITNRINYGTGFAQLEYGYDYVQIGSARLSQQLFGVATDSE 161
                 999***********************9766444.444334888888875..679******************************************998 PP

                 SHHHTTSSSSEEEE-S-GGGSCGGSCCH.HHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS........TSSTEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxx RF
         Asp  98 gstflaakfdGiLGlgfkeisveeatpv.fdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts........kgywqielesvt 187
                        ++ Gi+G g +     +  p+  dn+vsq+ ik+ +fs+ + + e++ g++vfGg+D++k++G l   p+          ++ + + l++v+
  CCE28529.1 162 F------AVTGIMGAGPQLKGWTSDYPMiLDNMVSQKFIKSRAFSLDIRSIESARGSVVFGGIDTKKFSGYLEKRPIIPaadspdklTR-YWVYLDGVS 253
                 8......489******77777777666669***********************************************988889987545.557899999 PP

                 ETTEEE......EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTE....EEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEE CS
                 xxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 188 vggktv......lcssgcqailDtGTsllalptsivekiakaigak....ksesegeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqC 276
                 v+++         + +g  ++lD+G ++  l+t+  +ki++a+ +     ++ ++g y v C+  +++ +++f++g  +i+vp ++++ k+++   + C
  CCE28529.1 254 VTKNDGsntvifDQVNGQPVLLDSGYTVSSLSTDHFNKIKDAFPGVtpppSDDNSGLYRVPCNVGQQNGTVNFKFGKTEINVPFNDFIWKQSA---DLC 349
                 976544334454455677888*********************97641111344479**********************************996...89* PP

                 EESEEECCTSSSEEEEHHHHTTEEEEEETTTTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 277 ilglvseeegdlwiLGdvFlrsayvvfdldnnrvgl 312
                 +lg+   ++ +  +LGd+Flr ayvv+d+dn++v +
  CCE28529.1 350 VLGV--IPDDKFPVLGDTFLRAAYVVYDMDNRQVHV 383
                 ****..6777889*******************9976 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.2
                 GGG-TT-EEEEEEEEEECTTSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
         Asp  47 pskSstykkngkslsisYGdgsv 69 
                 +s+  +  + +++ +i+YG++s 
  CCE28529.1 463 SSSQPATTSASTTRTIAYGSNST 485
                 22222333444455677777643 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.4   5.6e-12   2.5e-08       1     178 []      66     217 ..      66     217 .. 0.83
   2 ?   -2.8   4.0       1.4   6.5e+03      40      97 ..     424     491 ..     380     517 .. 0.50
   3 ?   -1.3   1.4       0.5   2.2e+03      48     100 ..     549     607 ..     502     637 .. 0.56

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 5.6e-12
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgssssGvlatd 99 
                 Y +++++Gtppqp+++ +DtGs  +W++                   s+++ + +c+s          + +++  +++ + +i+yg  g +++ +++ d
  CCE28529.1  66 YSIELQVGTPPQPVSVNFDTGSAELWINP----------------VCSKSSDPASCQSYGRF------NGSQTYVDTNITNRINYG-TG-FAQLEYGYD 140
                 99**************************9................44788999999987666......455566678899999996.55.9******** PP

      TAXi_N 100 tltlsstdgksvkvpnlvfGCgksnlgglaagadGilGLGrgk........lSlvsqlaskgslgnkFsyCLssssssssgvlffGd 178
                  +++     +s+++++ +fG ++  ++++   ++Gi+G G +         + l + +++k++ +++Fs+ +  s +s++g ++fG+
  CCE28529.1 141 YVQI-----GSARLSQQLFGVAT--DSEF--AVTGIMGAGPQLkgwtsdypMILDNMVSQKFIKSRAFSLDI-RSIESARGSVVFGG 217
                 ****.....8899********99..3333..489****9987656666666666677777779999999999.99999999999996 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
      TAXi_N  40 kpvfdpsksstykavpcssslCk...........aceasssaksgsssstceyeisygadgssssGvla 97 
                 +++ +  +ss+   v  ++ + +           a+ + ss+++++ s + + +i yg  +s++  + a
  CCE28529.1 424 TTTTTTMASSSAPLVLMNTTTTAmsapmslsvtnATITTSSSQPATTSASTTRTIAYG-SNSTTINTSA 491
                 2233333333333333333333344444443332224444445555555555555554.3334444444 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.5
      TAXi_N  48 sstykavpcssslCk....aceasssaksgsssstceyeisyg....adgssssGvlatdt 100
                 ss+++   ++s+       +  +  +++ ++s+++ +  ++ +      +s+ sG+latd 
  CCE28529.1 549 SSSTNSAGSNSNDSGnlatE--LPAQSTGSNSNDSGNLATELPaqstGSNSNDSGNLATDL 607
                 22222222333222223331..222222223333322222222212345556677777764 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.7e-05      0.21       2     157 ..     245     381 ..     244     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.7e-05
                 EEEEEEEEEETTEEE-------EE-S----SEEE-SSSSSEEE-HHHHHHHHHHHHHTS-GG...GE---TT-S-EEETTS......-S----EEEEES CS
      TAXi_C   2 YyipvkgisvngkrlplpasaldldktgsggtvlstgtpytvletdvYralvkafakelaaekvkrvaavkpfelCynsselgstragpavPtitlvle 100
                 Y + + g+sv +++ + +     +d+     ++l++g ++ +l td ++++++af   +         + ++ +  y+       ++g++  t+++++ 
  CCE28529.1 245 YWVYLDGVSVTKNDGSNTV-I--FDQVNGQPVLLDSGYTVSSLSTDHFNKIKDAFPGVTPP-------PSDDNSGLYRVPC----NVGQQNGTVNFKFG 329
                 6666777777666543332.2..37888899************************887766.......4677788899999....7999999******9 PP

                 SS-EEEE-GGGGEEE-SSSEEEE-EEE--S--SSSEEE-HHHHBTS-EEEETTTTEE CS
      TAXi_C 101 ggaewtisgenllvkveggvvClafvesgvagesavviGglqlednllvFDleksrl 157
                  ++e++++  +++ k++ ++  l+++      ++  v+G   l+  ++v+D++++++
  CCE28529.1 330 -KTEINVPFNDFIWKQSADLCVLGVIPD----DKFPVLGDTFLRAAYVVYDMDNRQV 381
                 .799999999999999999777889888....9999****************99986 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  13.0    0.0029        13      63     238 ..     411     593 ..     393     636 .. 0.54

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0029
       TFIIA  63 qlpqslkqalqasaaaasqapastsqslpslvipagksvqsltanssaataatfslpakleppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqq 161
                  +p s+++  q++++   +++  +s+s+p +++++  ++ s +++ s  t+at ++   +++p  + a++t   a g+ +++++++s+ +++aaqp+  
  CCE28529.1 411 GKPVSTSSSTQPATT---TTTTMASSSAPLVLMNTTTTAMSAPMSLS-VTNATITTS--SSQPATTSASTTRTIAYGS-NSTTINTSASSAAAAQPIDG 502
                 455555555554444...44555667778888877765555553333.455555554..3333355555555555553.344559999999999***99 PP

       TFIIA 162 vvqq.sqgsaaqssvaalqaqsqqaqalaepqqq.lekqqqqqqqqqqqqqqq.qvqqqqqe.......esqqaqqasqe........qvagsqv 238
                 +  + +q+ aa++s+ +l ++ ++++a+  +  +  + +q+ ++   + ++++   +++  +       + q++ ++  +        +++ +++
  CCE28529.1 503 SNTSlTQSDAASASTLPLIPAGRNNTAIYTSAAAvTTGNQKDIMATSSSTNSAgSNSND--SgnlatelPAQSTGSN--SndsgnlatELPAQST 593
                 96668899999999999988866666666666663443333343333333333122222..1234433311111111..1122323222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5780.31
//
Query:       CCE28530.1  [L=167]
Description: probable HYR1-glutathione peroxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-41  138.4   0.1    7.2e-41  138.1   0.1    1.1  1  GSHPx     Glutathione peroxidase
    0.00021   21.2   0.0     0.0003   20.7   0.0    1.5  1  AhpC-TSA  AhpC/TSA family
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.027   14.2   0.0    1.3  1  Redoxin   Redoxin


Domain annotation for each model (and alignments):
>> GSHPx  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.1   1.2e-44   7.2e-41       1     108 []       7     117 ..       7     117 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.1 bits;  conditional E-value: 1.2e-44
                 GGGBEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGG...GTEEEEEEEE-TTTT---S-GGGHHHTSSHTTT-SSEEB--BBSS CS
       GSHPx   1 iyelsakdidgekvkleklrgkvvlivnvaskCglteqykeleelqkrykd...kglvilgfPCnqfgkqepgsdeeikkfrqgkyevtfellekievn 96 
                 +y++++ d+ g++v+l  ++gkvvlivn askCg+t+q++ le l+k  k+   + +++lgfPCnqfg qepgs +ei++f+q +y+v f++++ki+vn
  CCE28530.1   7 FYDFKPLDKRGQEVSLADYKGKVVLIVNTASKCGFTPQFEGLETLYKSIKEtypEDFTVLGFPCNQFGGQEPGSSDEIQNFCQINYGVSFPIMQKIDVN 105
                 7*********************************************9887522279******************************************* PP

                 STTB-HHHHHHH CS
       GSHPx  97 Gekedplykflk 108
                 G+k+ ply++lk
  CCE28530.1 106 GDKASPLYEWLK 117
                 **********98 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     5e-08    0.0003       6      57 ..       8      57 ..       4     146 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 5e-08
                ---EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCC CS
    AhpC-TSA  6 pdfelknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefke 57
                 df+  ++ g++vsl+dykgk+v+++ +++  c ++  + + l+ ly+ +ke
  CCE28530.1  8 YDFKPLDKRGQEVSLADYKGKVVLIVNTAS-KCGFT-PQFEGLETLYKSIKE 57
                6899999*************8888888777.88876.678888888887775 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.5e-06     0.027       8      43 ..       9      41 ..       2      72 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.5e-06
                --ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HH CS
     Redoxin  8 dftlplaatdgnsvslsefkgkkvvvnfvpgafcPt 43
                df+   +++ g++vsl+++kgk+v+++  ++  c+ 
  CCE28530.1  9 DFKP--LDKRGQEVSLADYKGKVVLIVNTAS-KCGF 41
                6663..4799****************99999.8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1324.98
//
Query:       CCE28531.1  [L=423]
Description: uncharacterized protein CPUR_02218 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-67  227.1   0.1    5.3e-67  226.9   0.1    1.1  1  DAO             FAD dependent oxidoreductase
    1.4e-06   27.8   0.3     0.0042   16.3   0.1    2.1  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.6e-05   24.4   0.1    5.5e-05   23.3   0.1    1.6  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    8.9e-05   23.0   0.1      0.012   16.1   0.1    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00064   18.4   0.0      0.058   11.9   0.0    2.1  2  Mqo             Malate:quinone oxidoreductase (Mqo)
     0.0018   17.2   0.5       0.56    8.9   0.1    2.3  2  MCRA            MCRA family
  ------ inclusion threshold ------
      0.012   14.9   0.3      0.023   13.9   0.3    1.4  1  Thi4            Thi4 family
      0.036   12.9   0.0      0.056   12.3   0.0    1.2  1  Trp_halogenase  Tryptophan halogenase
      0.048   13.6   0.1       0.39   10.7   0.0    2.1  2  NAD_binding_9   FAD-NAD(P)-binding
        0.1   11.8   0.1       0.18   11.0   0.1    1.3  1  Amino_oxidase   Flavin containing amine oxidoreductase
       0.14   11.5   0.1        1.3    8.3   0.0    2.0  2  GMC_oxred_N     GMC oxidoreductase
       0.19   11.0   1.9        1.7    7.9   0.1    2.2  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.9   0.1   3.5e-70   5.3e-67       2     351 ..       7     401 ..       6     402 .. 0.81

  Alignments for each domain:
  == domain 1  score: 226.9 bits;  conditional E-value: 3.5e-70
                 EEEECTSHHHHHHHHHHHHTT........EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHH.HHHHHHHSSTTSEEEEEEEEEES CS
         DAO   2 vviiGGGiiGlstAyeLarrg........VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeel.releeelgididyrrtGllslaa 91 
                 +vi+GGG+iG++tAy+L+r++        +tlle+g  ++sgaSg+++gll+  ++y+    ++++ls+e+++ l +e+++ +   ++yr+  + s++a
  CCE28531.1   7 IVIVGGGVIGCTTAYYLTRHPkfnparhtITLLEAGASLASGASGKAGGLLAL-WAYPD---CIVPLSYELHAALaAEHDGPQK--WGYRKLKCGSIEA 99 
                 9******************967888999***********************99.87444...8*********999899997654..*****88888876 PP

                 S........................HHHHHHHHHHHHHH.HHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEE CS
         DAO  92 d........................eeelealdkllall.leagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveile 165
                                          +++ +a +++l+++ l+ +l   ++++++v  ++      +g+ ++++t+q++p ++t a+ + a+++Gv+++ 
  CCE28531.1 100 VvsnqtlskmrqpkqhdegkvweklPKQDAAAQDKLEEGaLPKDL--DWVNRDLVTNWAE-----MGSPGTTETAQAHPLHFTTAIGQLAQQAGVQMRM 191
                 333455666666666555555544423344444555554455555..5*****9*99996.....6777899*************************** PP

                 SECEEEEEEEE...TCEEEEE....EECTEEE..EEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE......... CS
         DAO 166 gtevtgleeed...gkvwgve....rttpgen..daadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpe......... 245
                 +++v ++  ++    k   +e    + t++++  + ++ v+++aG+w++ ll   ++   +++++r++++v+    e+ vsp+ai+++ +         
  CCE28531.1 192 NCRVDKITSTSspkHK---IEyldrN-TSETKelVDVTDVIVTAGPWTGrLL---PRS--KVEGLRAHSVVY----EADVSPYAIFTEIQlpsdfvpeh 277
                 *******664433344...4455553.443332234567*********9888...766..9***********....4467899***9999999999*** PP

                 ........EEETTTTEEEEEETTSEEEEEESSE.....EETTCSSTSCSHHHHHHHHHHHHHHSGGG..CGEEEEEEEEEE..E...TTSSEEEEEEET CS
         DAO 246 ........tdddgrgvyvtprkdgrvlvGgtad.....eesgdddpevdeedidellealrklfPql..gdvlrkwaGlrp..l...pdglpligetpg 324
                          + +  ++++++r+ g+ +++g++d     ++   d++++de+++d+++++++ l+P l  ++++ k+a+++p  +      +plig+t+ 
  CCE28531.1 278 raksqqkrMHKNRVDPEIYARPFGEAYACGEPDvaiplPDT-VDEVQCDEAQCDDIISYIKILSPVLgsAPIKTKQACYLPrhMrfgQESGPLIGPTS- 374
                 *****999788888889999999*********9**995555.4446********************85577999*******653433366******87. PP

                 EEEEEEEEECTTTHHHHHHHHHHHHHH CS
         DAO 325 vkglylatGhsghGltlapatGkllae 351
                 v+gl++a+Gh ++G++++patGkl++e
  CCE28531.1 375 VEGLWVAAGHTCWGIQNGPATGKLMSE 401
                 99***********************97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.8e-06    0.0042     143     177 ..       5      45 ..       1      54 [. 0.82
   2 !    9.5   0.0   0.00035      0.52     181     236 ..     170     232 ..     161     247 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.8e-06
                  SEEEEES-SHHHHHHHHHHHHHT-......EEEEEESSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgk......evtlveardrl 177
                  ++iv+vGgG+iG+ +A +l++  k       +tl+ea+  l
   CCE28531.1   5 RNIVIVGGGVIGCTTAYYLTRHPKfnparhTITLLEAGASL 45 
                  69****************98887777777459999988766 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00035
                  S-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE...EEEEEETTSCE....EEESEEEE-S- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx....xxxxxxxxxxx RF
  Pyr_redox_2 181 ldkelsaaleealekeGvevklgtsvkeidgnge...klevvledgee....idadlvvvavG 236
                  ++  ++ a+ +  ++ Gv+++++++v +i++ ++   k+e+ + + +e    +d+  v+v +G
   CCE28531.1 170 HPLHFTTAIGQLAQQAGVQMRMNCRVDKITSTSSpkhKIEYLDRNTSEtkelVDVTDVIVTAG 232
                  5556677777788899**************999997755566555555566788888888888 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   3.7e-08   5.5e-05       1      31 [.       9      45 ..       9      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.7e-08
                   EE--SHHHHHHHHHHHCC......TEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka......gfdvlllekrdrl 31
                   IvG+G+ G+++Ay+L+++      ++ ++lle++ +l
     CCE28531.1  9 IVGGGVIGCTTAYYLTRHpkfnpaRHTITLLEAGASL 45
                   9****************7766666789******9886 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   8.2e-06     0.012       1      22 [.       6      27 ..       6      53 .. 0.78
   2 ?    4.4   0.0     0.038        57      47      71 ..     179     203 ..     155     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.2e-06
                EEEEECSSHHHHHHHHHHHHTT CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg 22
                ++v+vGgG+ig+  A +l+++ 
  CCE28531.1  6 NIVIVGGGVIGCTTAYYLTRHP 27
                59****************8764 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.038
                 HHHHHHTTEEEECSEEEEEEEEETT CS
   Pyr_redox  47 qeklekngievllntkveeiegsed 71 
                  +  ++ g+++++n +v +i+ +++
  CCE28531.1 179 GQLAQQAGVQMRMNCRVDKITSTSS 203
                 5556777*************97665 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0079        12       3      44 ..       5      50 ..       3      54 .. 0.73
   2 !   11.9   0.0   3.9e-05     0.058     187     254 ..     178     246 ..     172     253 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0079
         Mqo  3 vdvvliGaGimsatlgvllk...elepe.lsievlerldkvaeess 44
                 ++v++G+G++  t + +l+   +++p   +i++le   + a+ +s
  CCE28531.1  5 RNIVIVGGGVIGCTTAYYLTrhpKFNPArHTITLLEAGASLASGAS 50
                589**************99833346664256788887777776655 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.9e-05
         Mqo 187 lkalekkkgvelklkhevkdlkreedgkWkvkvkdlktgek.kkvkakfvfiGaGGgalklLqksgipe 254
                 + +l++++gv+++++ +v++++ +++ k k+++ d++t+e+ + v+ + v + aG  + +lL +s+++ 
  CCE28531.1 178 IGQLAQQAGVQMRMNCRVDKITSTSSPKHKIEYLDRNTSETkELVDVTDVIVTAGPWTGRLLPRSKVEG 246
                 5678899****************************9776651668999*****************9986 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00037      0.56       3      40 ..       6      45 ..       4      56 .. 0.80
   2 !    6.3   0.0    0.0024       3.6     217     274 ..     183     234 ..     175     238 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00037
                EEEEE--SHHHHHHHHHHHHTT---GGG..EEEE-SS--- CS
        MCRA  3 kaylvGsGiasLaaAvyLirdakvpgen..ihileelkva 40
                ++ +vG+G+ + ++A+yL r+ k+++ +  i++le+ +++
  CCE28531.1  6 NIVIVGGGVIGCTTAYYLTRHPKFNPARhtITLLEAGASL 45
                6789*********************974338899987654 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0024
                 HHTT-EEE-SEEEEEEEEEEE.TTEEEEEEEEEEE.TTEEEEEE--TTEEEEEE---S CS
        MCRA 217 keqgVdfqfntkVtdiefeeeeedkktvteielekeegeeetieleedDlvfvtnGsi 274
                 ++ gV++++n++V  i+ +++ +     ++ie+ ++ +++et el + + v+vt G  
  CCE28531.1 183 QQAGVQMRMNCRVDKITSTSSPK-----HKIEYLDR-NTSETKELVDVTDVIVTAGPW 234
                 689**************997644.....67777763.455577777777788998865 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   1.5e-05     0.023      19      57 ..       6      49 ..       3      59 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
                EEEEE--SHHHHHHHHHHHHCTTS-.....EEEEESSSS--TTT CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlk.....vailersvspGGGa 57
                ++vivG+G  G t+ayyl+++p+++     +++le+  s+  Ga
  CCE28531.1  6 NIVIVGGGVIGCTTAYYLTRHPKFNparhtITLLEAGASLASGA 49
                79*******************99853333477888755554444 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.7e-05     0.056       1      33 [.       6      41 ..       6      48 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.7e-05
                    EEEEE--SHHHHHHHHHHHHHTTTS...SEEEEEE- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgk...levtlves 33
                    +ivivGGG  G ++A +l ++ k +   +++tl+e+
      CCE28531.1  6 NIVIVGGGVIGCTTAYYLTRHPKFNparHTITLLEA 41
                    69*****************99876666799999997 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00026      0.39       1      35 [.       8      44 ..       8      53 .. 0.86
   2 ?    0.3   0.0      0.41   6.2e+02      47      78 ..     186     216 ..     173     234 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
  NAD_binding_9  1 aivGaGprGlavlerLlara.kkkspleitlfdp.se 35
                   +ivG+G+ G +++  L ++   ++++++itl +  ++
     CCE28531.1  8 VIVGGGVIGCTTAYYLTRHPkFNPARHTITLLEAgAS 44
                   7*******************99999*******98443 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.41
  NAD_binding_9  47 seelllNvpasemslftddpptfaeWlrerga 78 
                      ++++N ++++++  t  p++  e+l+++  
     CCE28531.1 186 GVQMRMNCRVDKITS-TSSPKHKIEYLDRNTS 216
                    457888999988884.4567777777777764 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00012      0.18     215     266 ..     180     237 ..     174     253 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                    HHHHTTTTEEEETSEEEEEEEE.ETTCEEEEETTSTEE......EESEEEE-S-HHHHH CS
  Amino_oxidase 215 alaeelrgldirlntrVkeikr.egdgvtvtledgevv......eaDaVvvTvplgvlk 266
                    +la+ + g++ r+n+rV +i+  ++ + ++++ d ++       ++  V+vT+ +++ +
     CCE28531.1 180 QLAQ-QAGVQMRMNCRVDKITStSSPKHKIEYLDRNTSetkelvDVTDVIVTAGPWTGR 237
                    6888.9****************9999999999988888888978888899999988765 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0009       1.3       3      35 ..       7      44 ..       5      61 .. 0.80
   2 ?    1.1   0.0      0.13     2e+02     198     266 ..     177     242 ..     108     259 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0009
  GMC_oxred_N  3 elveggGsagsvvAaRLsedps.....tsvlvleaggr 35
                  +++ggG++g+++A+ L+ +p+     +++++leag++
   CCE28531.1  7 IVIVGGGVIGCTTAYYLTRHPKfnparHTITLLEAGAS 44
                 689***************99963332367999999976 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.13
  GMC_oxred_N 198 wLrpalerpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrS 266
                   + +  ++ ++++  +++++ki    ++     +e+ d +++ ++  v    v+v aG   +  lL rS
   CCE28531.1 177 AIGQLAQQAGVQMRMNCRVDKI--TSTSSPKHKIEYLDRNTSETKELVDVTDVIVTAGPW-TGRLLPRS 242
                  5556677889999*********..445666677899999888777777788888888854.55666666 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.4     0.059        89      30      44 ..       6      20 ..       3      25 .. 0.84
   2 ?    7.9   0.1    0.0011       1.7      57     124 ..     191     253 ..     175     259 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.059
                 EEEEESTSHHHHHHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAi 44
                 +++++GgGv G   +
   CCE28531.1  6 NIVIVGGGVIGCTTA 20
                 689********8766 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0011
                  EESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE---BTTSS---SC-HHHHHTS-TTEEE CS
  AlaDh_PNT_C  57 lDvrparleqleslgakfvevlksqeellaeavkeadvvigtvlipGkkaPkLvteemvksMkpgsVi 124
                  ++ r +++   +s ++k +e l ++ ++ +e v  +dv++++    G  + +L+ ++ v+ ++  sV+
   CCE28531.1 191 MNCRVDKITSTSSPKHK-IEYLDRNTSETKELVDVTDVIVTA----GPWTGRLLPRSKVEGLRAHSVV 253
                  56777788888888888.***********************9....7777778888999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2983.31
//
Query:       CCE28532.1  [L=241]
Description: related to NOP16-constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-63  214.2   6.6    2.3e-63  214.0   6.6    1.0  1  Nop16     Ribosome biogenesis protein Nop16


Domain annotation for each model (and alignments):
>> Nop16  Ribosome biogenesis protein Nop16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.0   6.6   1.3e-67   2.3e-63       1     209 [.       5     238 ..       5     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 214.0 bits;  conditional E-value: 1.3e-67
       Nop16   1 rqrrkarssvkkakkrkksklkkkvnilgnpiiaenWdkkkTlkqNYkrLGLvaklnapaGgvekklskanekeekekkklee......eesdekklsk 93 
                 +q++k+rs+++ +++   +k+kk +n++gn+iia+nW+k++Tl+qNY+rLGL+a+l+apaGg+ekkl++ +++ + + + l++      + s+ +k   
  CCE28532.1   5 LQKKKRRSKRQPVRQ--PNKTKKILNPRGNNIIAQNWNKNETLAQNYRRLGLLARLKAPAGGTEKKLATGTSAGTVNPT-LAIskhdpfAISNLDKAII 100
                 69**********997..55556**********************************************98887666543.3335778889999999*** PP

       Nop16  94 gearieRDeeGkivkviegk.kkkeneledpleeleedeekeeeee.....................kkkktevvkeLekeaarekakkerhlsereee 170
                 +ea++eRD++Gki+++++ +  +k+n+l+dpl++le+d+e+e+++                      + ++t++v++L +e+++++ k +r++se e+e
  CCE28532.1 101 SEAKVERDADGKIIRILSRShIEKANPLNDPLRALESDSEAEDADVdadagaeypawgglaereaaeDANTTDIVRSLIEESHNPAPKMKRYQSEAERE 199
                 *******************9899***************999988889*******************99999**************************** PP

       Nop16 171 wlerLvekhGdDyeaMarDrkLNpmqqtegdlkrrikkw 209
                 wl+rLv++hGdD+ aMarD kLNpmqqt++d+ +r+kk+
  CCE28532.1 200 WLQRLVDRHGDDTGAMARDLKLNPMQQTARDIGKRLKKM 238
                 *************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1952.73
//
Query:       CCE28533.1  [L=279]
Description: uncharacterized protein CPUR_02220 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-05   22.6  11.6    0.00013   22.0  11.6    1.2  1  MARVEL    Membrane-associating domain
  ------ inclusion threshold ------
      0.011   16.1   1.6      0.023   15.1   0.4    1.8  2  DUF4281   Domain of unknown function (DUF4281)
        1.2    9.0   7.4       0.34   10.7   1.2    2.1  2  Amastin   Amastin surface glycoprotein


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0  11.6   2.1e-08   0.00013       8     143 ..      16     135 ..      12     136 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.1e-08
      MARVEL   8 ilrilqlvfaiiilgliasliakldqllgspssalnfavfvavfsfly.alfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrdis 105
                  l ++q+++ai+++++ +++      +  ++    n   +++vf + + a ++l+++  +   +++ + p + l+vd+ +++ wl af++ aa+ ++  
  CCE28533.1  16 GLHCAQILLAIVAWCMEIAVF-----VGEDAKVVGNNGWTFGVFFLTIpAWVYLIMAPRF-GRTRKLAEPHVMLAVDGSFTIIWLSAFATQAAYNTSGL 108
                 67899***********77777.....2333333333444444444444455555554443.47799******************************944 PP

      MARVEL 106 cafesnqysasltvrcgqaqaavafgflavllfaasav 143
                 c           +++c+ ++a v +g++ +llfaas++
  CCE28533.1 109 C-----------GQACNISKAVVGLGVFVCLLFAASTF 135
                 4...........789*********************98 PP

>> DUF4281  Domain of unknown function (DUF4281)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.4   3.8e-06     0.023       7      47 ..      54      93 ..      50     108 .. 0.73
   2 ?   -1.2   0.1      0.42   2.5e+03     100     122 ..     111     133 ..      95     138 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.8e-06
     DUF4281  7 nllvlpfwllmilaPrakvtrrvmesllpflvlallYlvll 47
                ++l++p+w+ +i+aPr   tr+++e ++++ ++   +++++
  CCE28533.1 54 FFLTIPAWVYLIMAPRFGRTRKLAEPHVML-AVDGSFTIIW 93
                5789*******************8887764.4444444543 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.42
     DUF4281 100 lrrgvpalltahsllltllfGPl 122
                 ++ ++++ ++ + ++++llf+  
  CCE28533.1 111 QACNISKAVVGLGVFVCLLFAAS 133
                 66688888888999999998765 PP

>> Amastin  Amastin surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.2   5.8e-05      0.34      97     150 ..      14      66 ..       9      69 .. 0.92
   2 ?    1.6   0.6     0.037   2.2e+02      72     119 ..      95     139 ..      76     155 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.8e-05
     Amastin  97 clllnivsvvtllivwalmvavyykrfCdalksttakygaGFgLlvvawlldli 150
                  + l +  ++++++ w + +av+ ++  + + ++ +++g+ F L++ aw+  ++
  CCE28533.1  14 KMGLHCAQILLAIVAWCMEIAVFVGEDAKVVGNNGWTFGV-FFLTIPAWVYLIM 66 
                 58899**********************************9.99******98776 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.037
     Amastin  72 silvlaaalllsvllllccsslkwvclllnivsvvtllivwalmvavy 119
                 s +++ aa  +s l       +++   ++++  +v+ll    + v++y
  CCE28533.1  95 SAFATQAAYNTSGLCGQA---CNISKAVVGLGVFVCLLFAASTFVSAY 139
                 334444444444433222...222222222233334444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2316.29
//
Query:       CCE28534.1  [L=563]
Description: related to multidrug resistance protein fnx1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-41  142.2  43.1    1.9e-41  142.2  43.1    1.4  2  MFS_1     Major Facilitator Superfamily
      2e-15   56.6   9.5      2e-15   56.6   9.5    2.8  3  Sugar_tr  Sugar (and other) transporter
    1.1e-06   27.4  13.5    1.1e-06   27.4  13.5    2.6  2  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2  43.1   3.1e-45   1.9e-41       2     352 ..      75     471 ..      74     472 .. 0.87
   2 ?   -3.6   0.3      0.67     4e+03      87      99 ..     535     547 ..     526     554 .. 0.43

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 3.1e-45
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 ++++fl a +++i++++    +a+++  s   +++l+t+y +  a+ +++ Grl+d fGr + l+++ ++fa+g l++ + ++   +++++rv++G+g+
  CCE28534.1  75 WIGVFLGAVDSTIIATLSA-PIASEFK-SLRLLSWLATAYLISNAACQPISGRLTDIFGRGPGLVFSNVVFAAGNLICGL-AQDEkTMIFGRVVAGIGG 170
                 8999999999999999999.8******.**********************************************666666.88888************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg..Wravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                 g+l++++  + +d++p + rg + g+ +++++ Ga++g l+ggl+ ++    Wr++f++  +  ll++v + +l+ ++p+++ ++    +         
  CCE28534.1 171 GGLMSISTFVGSDLVPLRSRGIVQGIGNICYGSGAMMGGLFGGLVNDHTArgWRLAFLVQVPPVLLSAVAVHFLVKVPPKQSDKS-YLARIdfmgvflt 268
                 **********************************************666555***************996444444444444444.444447******* PP

       MFS_1 189 ..........................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglll 245
                                                           +g++++p++p  ++l ++ vl ++ + ll++ +++ +ll+++ply ++v+g s +  
  CCE28534.1 269 ssfltllllglnsggnqvpwthplplttiplsivlfvvflwwEGRARQPIIP-VRLLMSRTVLAACSANLLST-MVVLTLLFYVPLY-MQVMGDS-ATD 363
                 *******************************9999**999999999999999.99999999886666666666.69999********.*******.8** PP

       MFS_1 246 aglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..ssavllll.vlvliGfglgfvfpsllalasdlappeeagtasglf 341
                 agl l  + +++ ++++lag++++r+gr  + +l++l+++++  g++++ +   +s+v+l   +++l+G g+g   ++ l ++   +  ++++ +++++
  CCE28534.1 364 AGLRLLPSPVGVSVMSVLAGYMMKRTGR--FVTLGILSMITIITGIIFFTLMgrTSSVWLTSaAFFLVGGGYGALLTTTLLACIAAVDHSQQAVVTSAT 460
                 ***************************9..6666666666666666666666445555555568888***9999988888888888889********** PP

       MFS_1 342 ntagslggalg 352
                  +a+slgg +g
  CCE28534.1 461 YLARSLGGTVG 471
                 ********998 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.67
       MFS_1  87 lllvlrvlqGlga 99 
                 l +++ +l+Gl++
  CCE28534.1 535 LTMLGLALAGLAC 547
                 2222222222222 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   9.5   3.3e-19     2e-15      44     191 ..     101     244 ..      45     248 .. 0.89
   2 ?   -2.0   1.1      0.21   1.2e+03     157     191 ..     275     309 ..     262     313 .. 0.73
   3 !    2.8   9.9    0.0072        43      56     170 ..     372     488 ..     333     491 .. 0.77

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 3.3e-19
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s  l+++++ ++l+  ++ + ++g l+d+fGR ++l++++v+f +g++++++a+       +i+gRv++Gig G+   +++   s + p + Rg++ ++
  CCE28534.1 101 SLRLLSWLATAYLISNAACQPISGRLTDIFGRGPGLVFSNVVFAAGNLICGLAQ---DEKTMIFGRVVAGIGGGGLMSISTFVGSDLVPLRSRGIVQGI 196
                 456789************************************************...66999************************************* PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllfl 191
                  + ++  G +++  fg  +n+ ++  gwr+ + +q+ p ll +++++fl
  CCE28534.1 197 GNICYGSGAMMGGLFGGLVNDHTA-RGWRLAFLVQVPPVLLSAVAVHFL 244
                 *******************88888.8************99999999997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.21
                 HHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS CS
    Sugar_tr 157 fglglnktsnadgwrillglqlvpallllilllfl 191
                 + lgln  +n++ w  +l l+ +p  ++l++++++
  CCE28534.1 275 LLLGLNSGGNQVPWTHPLPLTTIPLSIVLFVVFLW 309
                 3467777788999*******999988877777776 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.0072
                 HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCH..HHHHHHHHHHHHHHH CS
    Sugar_tr  56 lvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.nsvevlivgRvlvGigvGlasvlvPmyisEiApkklR..galvslyqlaitfGi 151
                  vG  + s++ag++++r GR  +l i +++++i +++ ++  g+ +sv++  ++ +lvG g G+   l++++++ iA  ++     ++s + la ++G 
  CCE28534.1 372 PVGVSVMSVLAGYMMKRTGRFVTLGILSMITIITGIIFFTLMGRtSSVWLTSAAFFLVGGGYGAL--LTTTLLACIAAVDHSqqAVVTSATYLARSLGG 468
                 58889999******************99999998888877776669*************999976..55566666776666622334455667777777 PP

                 HHHHHHHHHH.HTSS-TTHH CS
    Sugar_tr 152 lvaaifglgl.nktsnadgw 170
                  v++++g ++ +++ +a  w
  CCE28534.1 469 TVGITVGSAVyQNILQARLW 488
                 77777776665555555555 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4  13.5   1.9e-10   1.1e-06      82     328 ..     107     347 ..      62     365 .. 0.74
   2 ?   -2.5   0.0      0.21   1.3e+03      87     109 ..     472     495 ..     438     497 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.9e-10
       TRI12  82 lfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagasplfvg.elmsnktkflgllivsipvvvts 179
                  ++t + + +a    + grltd fgr p ++ + ++   g ++   a+  +t++    + g+  g   +   fvg +l+  +++ +   i  i     +
  CCE28534.1 107 WLATAYLISNAACQPISGRLTDIFGRGPGLVFSNVVFAAGNLICGLAQDEKTMIFGRVVAGIGGGGLMSISTFVGsDLVPLRSRGIVQGIGNICYGSGA 205
                 3567777889999999**********************************************************9446666665443334444333333 PP

       TRI12 180 glspylgqrla..iqgswrwifyiyi...itsaiavllivvwyyppsfaqlhgkkvrkreelakldwigiilvivgvslfllgvswggkpnspwnsakv 273
                  ++  +g  +       wr  f + +   ++sa+av ++v    pp        k + +  la++d++g++l +   +l+llg+  gg+ + pw     
  CCE28534.1 206 MMGGLFGGLVNdhTARGWRLAFLVQVppvLLSAVAVHFLV--KVPP--------KQSDKSYLARIDFMGVFLTSSFLTLLLLGLNSGGN-QVPWTHPLP 293
                 3466666655411334599999987433378888887766..3566........5677899************************9997.68**99988 PP

       TRI12 274 iglissglgslvvfalyevygkpvrpivppalfkd.trgfvcillissimgamnls 328
                 +  i   +  +vvf  +e  g+  +pi+p  l+   t    c   + s m  + l 
  CCE28534.1 294 LTTIPLSIVLFVVFLWWE--GRARQPIIPVRLLMSrTVLAACSANLLSTMVVLTLL 347
                 888888888888888877..99*******998764144445555444444444433 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.21
       TRI12  87 wttgqavsi.lvmgrltdrfgrrp 109
                  t+g av   ++  rl drfg +p
  CCE28534.1 472 ITVGSAVYQnILQARLWDRFGDQP 495
                 578888864156689999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4479.12
//
Query:       CCE28535.1  [L=726]
Description: calcium_related spray protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.7e-158  525.7  27.9   9.1e-158  525.4  27.9    1.0  1  TRP             Transient receptor potential (TRP) ion channe
    1.7e-39  135.4   0.2    3.3e-39  134.4   0.1    1.6  2  TRP_N           ML-like domain
    0.00032   21.1   0.1    0.00061   20.2   0.1    1.4  1  E1_DerP2_DerF2  ML domain


Domain annotation for each model (and alignments):
>> TRP  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  525.4  27.9  1.5e-161  9.1e-158       1     426 []     167     603 ..     167     603 .. 0.96

  Alignments for each domain:
  == domain 1  score: 525.4 bits;  conditional E-value: 1.5e-161
         TRP   1 vkwvtaviaglallasnasavastlgnsnaaahvaasvlslflyfQsvafigmlsvnyPpvlaawtqnfaWsmglirvsfmqkiinwyvqstgGtatlv 99 
                 +kw+taviaglalla   s v+s+ g+ n+aahva+++lslf+yfQ++a+ig+ sv++Pp++++wtqnf+Wsmg+i+v fmq+i++wy+++tgG++t +
  CCE28535.1 167 IKWATAVIAGLALLA---SGVVSGRGHLNTAAHVASNSLSLFGYFQAQAIIGLSSVHLPPIAQSWTQNFQWSMGIIHVPFMQRIFTWYQRATGGSPTNI 262
                 69*************...********************************************************************************* PP

         TRP 100 lsssstssvsv.kral...............krgeskslpesssklv.rGikrvaekagiestnafmtgllffliliallvvlvllfKlllellarkkl 181
                 +s+  t+sv+v kra+               +rg+     ++s ++v +Gi+rva++++ie+tn+fmtgl+ff+++i++++v+v++fK ++el+a  +l
  CCE28535.1 263 FSTLLTISVQVqKRAVeiladpvieraarliRRGNI---LSESGSYVvYGIQRVAYRSKIETTNLFMTGLTFFCLFIVITAVGVAAFKGIIELCASGGL 358
                 ***********5466677888888766555444444...3333445449************************************************** PP

         TRP 182 ikedrlkefrknwlgilkgallrlilifffqllvlclfeftqrdsaavvvlAvillalflgvllffafrvlitarkskrlhknpaylLysdkkvlnkyG 280
                 + +dr+ efr+ w+ ilkg+++rl+li+f+q+++lc++e+tq ds+a+ +lAv++l++++++l + + +v+++ar+s+++h+npay+L+sd+++lnk+G
  CCE28535.1 359 LAKDRFLEFRNGWRIILKGIMFRLCLIGFPQITILCFWELTQIDSSAEAILAVVFLLTLVVILSWGTGKVIRIARRSIAMHQNPAYILFSDPQCLNKWG 457
                 *************************************************************************************************** PP

         TRP 281 flyeqyrasrywffvpllvylfvkalfialaqgsGkvQvialliiEllylvlliwlrPyedkrtnvlniiisvvkvlnvilllaFseefglseivktvv 379
                 fly q+ras+y+f++p+l+y+++k+lf++++q+ G++Q+i++l++El++l++ ++lrP++dk+tn +ni+i +++++n+++l++Fs++fg + iv++ +
  CCE28535.1 458 FLYIQFRASAYYFVAPVLLYVLLKSLFVSFGQKAGLAQAIGFLVLELAALIASSVLRPWMDKSTNSFNIAIYAINFVNSVFLIIFSDVFGAPGIVRGSI 556
                 *************************************************************************************************** PP

         TRP 380 Gvvlivinavlalvlliliivnaiiallsknpdrryrpakddresfl 426
                 Gvv++++na ++l+ll+++++++++++++knpd+ry+ + ddr+sf+
  CCE28535.1 557 GVVFFILNASFSLILLLMVMISTAVTFFRKNPDARYQFMADDRASFM 603
                 *********************************************97 PP

>> TRP_N  ML-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.1   5.5e-43   3.3e-39       2     139 .]      25     162 ..      24     162 .. 0.97
   2 ?   -3.7   0.0       2.3   1.4e+04      48      69 ..     334     355 ..     330     357 .. 0.87

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 5.5e-43
       TRP_N   2 vtssfenClensqftaskfdvtftpdnktvvfnvtgtssienkavtlelkveaygyevvnetvdpCdan.vkglCPlgpgfkinasgvlkvseevvsei 99 
                  ++s+++C+ +s f+as f+v++tp n++  +++ +tss+++k v+++l v +yg  +++++v+pCd++ ++g+CP+ pg k+++s++++v+ ++v+ +
  CCE28535.1  25 LSNSLNSCQPDSRFEASLFKVVYTPANNSADIDLVATSSVQGK-VMFDLAVVVYGLPIIKKQVNPCDIKgLDGICPMIPG-KTKLSFNVPVPGDAVKAL 121
                 5799***************************************.************************************.****************** PP

       TRP_N 100 psiaYsipdldatvrvriystg.eateiaCvsatitngktv 139
                 p+ia+sipdlda+vrv+++ t+ ++t+iaCv+a+i+ngktv
  CCE28535.1 122 PGIAFSIPDLDAMVRVKMNLTDgKNTQIACVEAQISNGKTV 162
                 ****************9998555*****************7 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.3
       TRP_N  48 lelkveaygyevvnetvdpCda 69 
                 l++ ++a+g  +++  +++C +
  CCE28535.1 334 LFIVITAVGVAAFKGIIELCAS 355
                 678999***********99976 PP

>> E1_DerP2_DerF2  ML domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1     1e-07   0.00061      37     133 ..      53     157 ..      32     158 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1e-07
                     EEEEEECSSBBSSEEE..EEEEEETTEEEEE-BSSEETCHHHHHHTTTT-SSSB-TCEEEEEEEEEE...........S-CCCHSC..EEEEEEE CS
  E1_DerP2_DerF2  37 sadgstsdeissglka..evevkvggwikvpfelpetddaCkvlelgegleCPikageyvtytlslp...........lpselpng..kyrvele 116
                     sad+++  ++s + k+  ++ v v g ++++ +   + + C+  + g    CP+ +g++ ++++++p           +  ++p+    +rv++ 
      CCE28535.1  53 SADIDLVATSSVQGKVmfDLAVVVYG-LPIIKK---QVNPCDI-K-GLDGICPMIPGKT-KLSFNVPvpgdavkalpgIAFSIPDLdaMVRVKMN 140
                     34443333333333443477777777.777777...55****5.4.44557********.99****96677666644444444444989****** PP

                     EEECTTEEEEEEEEEEE CS
  E1_DerP2_DerF2 117 lldedgkeltCvkidvs 133
                     l+d ++ +++Cv++++s
      CCE28535.1 141 LTDGKNTQIACVEAQIS 157
                     *************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5145.01
//
Query:       CCE28536.1  [L=229]
Description: uncharacterized protein CPUR_02223 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      126  (0.00702772); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1691.30
//
Query:       CCE28537.1  [L=611]
Description: probable H+-transporting ATPase, vacuolar, 67K chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-108  361.1   0.0   2.4e-108  360.7   0.0    1.2  1  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
    2.1e-46  156.7   0.0    4.6e-46  155.6   0.0    1.6  1  ATP-synt_ab_Xtn  ATPsynthase alpha/beta subunit N-term extens
    1.9e-15   57.1   4.1    3.2e-15   56.4   3.2    1.9  2  ATP-synt_ab_N    ATP synthase alpha/beta family, beta-barrel 


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.7   0.0    4e-112  2.4e-108       1     213 []     230     455 ..     230     455 .. 0.98

  Alignments for each domain:
  == domain 1  score: 360.7 bits;  conditional E-value: 4e-112
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHH........SS.GGGGEEEEEEETTS-HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xx.xxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvgiGergnevaevleefpe........gt.imkrtvlvantsnepvaareas 89 
                  G+rvlDalfp vqG++++ipgafg+Gktvisqs+sk snsd +i+yvg+Gergne+aevl++fpe        ++ imkrt+l+antsn+pvaareas
   CCE28537.1 230 GQRVLDALFPSVQGGTVAIPGAFGCGKTVISQSVSKFSNSD-VIVYVGCGERGNEMAEVLKDFPElsidvdgrQEpIMKRTTLIANTSNMPVAAREAS 326
                  9****************************************.*************************999976337********************** PP

                  HHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEE.....TSSEEEEEEEEEEE-GGCSTTSHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  90 iytgitlAEyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagka.....pdrtGsvtivaavspaggDfsdpvtta 182
                  iytgit+AEyfrdqg +v ++ads+srwaeAlre+s+rlgempadqg+paylgaklas+yERagk+     p+r+Gsv+iv avsp+ggDfsdpvtt 
   CCE28537.1 327 IYTGITVAEYFRDQGLDVAMMADSSSRWAEALRELSGRLGEMPADQGFPAYLGAKLASFYERAGKVvslgsPERQGSVSIVGAVSPPGGDFSDPVTTS 424
                  ***********************************************************************9************************** PP

                  HHHHSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 183 tlgitdgfivLdkklaqrkhfPainvlvSvS 213
                  tlgi+++f++LdkklaqrkhfP+in++ S+S
   CCE28537.1 425 TLGIVQVFWGLDKKLAQRKHFPSINTSLSYS 455
                  ******************************9 PP

>> ATP-synt_ab_Xtn  ATPsynthase alpha/beta subunit N-term extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.0   7.7e-50   4.6e-46       1     121 []     100     221 ..     100     221 .. 0.99

  Alignments for each domain:
  == domain 1  score: 155.6 bits;  conditional E-value: 7.7e-50
                      EETTS-BHHHHHHHHTS.BE-TT----SS-SSS-EEEEESS-TT-EEETT-EEEEEECTTCE.EEEEE--TT-EEEEEEE--EEEE-TTSECEE CS
  ATP-synt_ab_Xtn   1 yDGiqrpLekiaeksgs.fierGvkvpaldrekkwefkpkvkvgdkvsggdilGtvqeteli.ehkimvppkvegkvkeiaeegeytvedtiae 92 
                      yDGiqrpLe+i+++s+s +i+rG++vpaldr+kkwef+p++kvg+++sggd++Gtv e+++i +h+i+ pp+++g + +ia++g+ytv ++i+e
       CCE28537.1 100 YDGIQRPLEDISKVSKSiYIPRGISVPALDRTKKWEFTPTMKVGEHISGGDVWGTVFENSFIsTHRIIFPPRARGIIRKIAPKGTYTVAEKILE 193
                      9*************************************************************9******************************* PP

                      ECETT.ECEEEESSEEEETTS---ESEEE CS
  ATP-synt_ab_Xtn  93 veteegkekeltllqkwPvrkprpvkekl 121
                      ve+++ k++e+ ++q+wPvr prp +ekl
       CCE28537.1 194 VEFDG-KKTEYPMMQSWPVRVPRPSTEKL 221
                      **998.7*******************996 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   3.2   5.4e-19   3.2e-15       1      69 []      22      84 ..      22      84 .. 0.98
   2 ?   -3.3   0.0       2.3   1.4e+04      10      31 ..      88     109 ..      87     113 .. 0.72

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 5.4e-19
                   EEEEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N  1 ivqviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69
                   i++++Gpv+ +e++ig   ++y++++v+  +  + l+g+++++ +d++ ++v+++t G+++G++V+rTG
     CCE28537.1 22 IYSISGPVIVAEDMIG--VAMYELVKVG--H--ENLVGEVIRINGDQASIQVYEETAGVKVGDPVTRTG 84
                   789*************..**********..8..89*********************************9 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.3
                    EEESSTSCETCTTEEEEECCET CS
  ATP-synt_ab_N  10 dvefgigrlpgiynalevelve 31 
                    +ve g+g l giy+ ++ +l++
     CCE28537.1  88 SVELGPGLLNGIYDGIQRPLED 109
                    6777888888888888777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4399.57
//
Query:       CCE28538.1  [L=319]
Description: related to dihydrodipicolinate synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-33  114.4   0.0    4.8e-33  114.1   0.0    1.1  1  DHDPS     Dihydrodipicolinate synthetase family


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   0.0   2.7e-37   4.8e-33       4     284 ..      11     307 ..       8     312 .. 0.86

  Alignments for each domain:
  == domain 1  score: 114.1 bits;  conditional E-value: 2.7e-37
                 EEEEE----B-TT.SSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTT....SSEEEEE---SSHHHHHHHHHCCCCCT- CS
       DHDPS   4 giitalvtpfded.gkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakg....ripviagvGsnstseaiklakkaeeaGa 97 
                 gi ++ vt fd +   ld   ++  ++ li +g+ glvv+G+ GE+     +ek ++ + +++a  +    + p+i g+   s++  ++l++ a++aGa
  CCE28538.1  11 GIYAPTVTFFDPQtEDLDIPPIKAHAQRLITAGLAGLVVMGSNGEAIHCTRSEKLAVTKATRDALTEagfpSTPIILGASEGSVHGTLQLTRLAADAGA 109
                 7889999999987257*********************************************998876334479*****99999**************** PP

                 SEEEEE---SS---..HHHHHHHHHHHHHCHSS-EEEEE-HH.HHSHHHHHHHHHHHHTSTTEEEEEE-SS-C..........THHHHHHCCCSTTSEE CS
       DHDPS  98 dgvlavtPYYnkps..qeglyqhfkaiieatdlpvilYnvps.rtgadlspetvkrLaelenivgvKeavgdl..........eevikikkevgkdlvi 183
                 d  l+++P Y++p+  q+ ++++f  ++ a  lpvi+Yn p+  +g dl+ +t+ +L + +nivg K++ g++          ++ + +  + g+ ++ 
  CCE28538.1 110 DYTLLLPPSYYRPQtdQQAIINYFTDVADASPLPVIIYNYPGaVSGIDLNSDTLIQLGQHPNIVGTKFTCGNTgkltrvalgtDAKTPRPSREGSGYMA 208
                 ********999875237889********8888*********6379****************************55554444433333334455778999 PP

                 EES-GGGHHHHHHTT-SEEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCCSCCHHHHHHHHCTTSSSBB.--TTS--S-HHHHHHH CS
       DHDPS 184 ysGddelllsalslGadGvisvtsniagermrqlikalkeGdlaeaaelnekllplikilfaepnvilvktalellGlvveatlrkPltpleeeekeel 282
                 + G  + + ++l  G+ Gvi+  +n++++    + +++ eG+++eaael+++l +  ++ + +  v++ k a+e+     +  +r+Pl  l+e   e++
  CCE28538.1 209 FGGLCDFTMQTLVSGGSGVIAGGANVMPKVCVRVWNLYVEGKTEEAAELQRVLSR-GDWPLTRAGVAGTKKAMEMYYGYGGF-ARRPLRRLDEAGWEAV 305
                 ***88889999999***********************************988877.78888999999999999976444444.8999999988777766 PP

                 HH CS
       DHDPS 283 ea 284
                 ++
  CCE28538.1 306 RE 307
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2572.02
//
Query:       CCE28539.1  [L=415]
Description: uncharacterized protein CPUR_02226 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-11   44.7   0.1    1.6e-10   41.9   0.1    2.2  1  GFO_IDH_MocA   Oxidoreductase family, NAD-binding Rossmann fo
  ------ inclusion threshold ------
      0.064   13.7   0.0       0.13   12.7   0.0    1.5  1  CoA_binding_2  CoA binding domain


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   1.7e-14   1.6e-10      18     119 ..      61     161 ..       4     162 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1.7e-14
                   HHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE..EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SSHHHHHHHHHHHHHH CS
  GFO_IDH_MocA  18 plnesqrleevvalldpdaeraeavaesfgve..aysdleelladpeidavivatpngtheelakaaleagkhvllEKPlattveeakelvelaekk 112
                   +++++  +++++ +++    + e +  + +++  ay+   + l+    da++v tp  th+ +a+ a+e+g+hvll KP + +++  +elv++a++k
    CCE28539.1  61 AIRKH-LDQKITQVYNGLDTSFESFPPNDQIDpdAYKAAIDALN--PGDAITVFTPDPTHYPIALYAIERGIHVLLTKPAVKQLDHHQELVRRAREK 154
                   44444.56699999999999999997777776668888777777..57************************************************* PP

                   TS-EEEE CS
  GFO_IDH_MocA 113 gklvsvg 119
                   g+ v+++
    CCE28539.1 155 GVYVFIE 161
                   *999876 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.5e-05      0.13      53     105 ..     102     158 ..      72     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
                    ..T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT....---HHHHHHHHHTT-EE CS
  CoA_binding_2  53 pepvdlvdvftppeatpeivkealalgakavwlqpg....sedeeaaelaeeagirv 105
                      p d+++vftp  +  +i+ +a+++g+ ++   p+      ++e++++a+e+g+ v
     CCE28539.1 102 LNPGDAITVFTPDPTHYPIALYAIERGIHVLLTKPAvkqlDHHQELVRRAREKGVYV 158
                    34667*******************************999999************966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3092.65
//
Query:       CCE28540.1  [L=540]
Description: related to 2`-O-ribosyl phosphate transferase RIT1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.5e-102  342.0   0.2   1.5e-100  336.1   0.2    2.1  1  Rit1_C         Rit1 N-terminal domain
    1.9e-33  115.1   0.0      5e-33  113.7   0.0    1.8  1  Init_tRNA_PT   Rit1 DUSP-like domain
  ------ inclusion threshold ------
      0.026   13.9   0.6      0.043   13.2   0.6    1.3  1  DUF4820        Domain of unknown function (DUF4820)
       0.03   13.5   3.1      0.048   12.8   3.1    1.3  1  Roughex        Drosophila roughex protein
      0.046   13.4   0.0      0.082   12.6   0.0    1.3  1  Endotoxin_mid  Bacillus thuringiensis delta-Endotoxin, middle
      0.088   12.4   4.6       0.14   11.7   4.6    1.2  1  SR-25          Nuclear RNA-splicing-associated protein
       0.18   11.0   0.1       0.23   10.7   0.1    1.2  1  Zip            ZIP Zinc transporter
       0.57    8.9   2.0       0.81    8.4   2.0    1.1  1  Presenilin     Presenilin
       0.89    8.9   8.2        1.4    8.2   8.2    1.2  1  CobT           Cobalamin biosynthesis protein CobT
        5.7    6.8   6.7         11    5.9   6.7    1.4  1  DUF1068        Protein of unknown function (DUF1068)


Domain annotation for each model (and alignments):
>> Rit1_C  Rit1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.1   0.2  8.6e-104  1.5e-100       1     271 [.      21     366 ..      21     367 .. 0.87

  Alignments for each domain:
  == domain 1  score: 336.1 bits;  conditional E-value: 8.6e-104
      Rit1_C   1 lkrselsiknrLrSiaeDaeFveevaeaykk........lplvaNeRcGsWYvkpek..kkasaYFkStdGHtgqwkfslrRlNlhllelieeekgiii 89 
                 lkrs+lsi+nrL+Si++Da+Fv ++a++  +        +plvaN+RcGsWYv+p k  ++a+aYFkStdGH+++wk+s+rRlN+hl+++iee++giii
  CCE28540.1  21 LKRSTLSIHNRLTSIHSDAQFVLRAASSP-SlrgraskpRPLVANQRCGSWYVPPGKtpQRACAYFKSTDGHERAWKCSTRRLNMHLVDMIEEHDGIII 118
                 79********************9999875.347889999****************9976789************************************* PP

      Rit1_C  90 vdsTrrGkrmPDalskTiPiWcavlnralleeeeeseeeselklatppevvsesekaqiearidefveklkelkldleklkaklkkplrplwitpessl 188
                 vdsTrrGkrmPDals+TiPiWc+vln++ll+   +++ +s+l+l  pp+ +++s++aqi+a+i+efv++l++lkl+       l+kplrp+w+t+essl
  CCE28540.1 119 VDSTRRGKRMPDALSTTIPIWCTVLNNILLP---SHPLSSQLFL--PPH-LMASTHAQIMALIPEFVQALRDLKLEALP---VLTKPLRPFWVTQESSL 208
                 *******************************...6788888888..777.999*******************9885444...389************** PP

      Rit1_C 189 leeeeee....................................................................ke...............ftpvilv 204
                 l +e++                                                                     ++               ++p+i++
  CCE28540.1 209 LPPEDDVcalcyssrwplsscscscscsgsesiassvhsfpspsskddnknnndiddtkdspqqqdqeqaheqkqEQkqeqeqeqqgtifqdYHPIICL 307
                 ***99999999999999999999999888888888888888888877777777777776666666666665555500555556666666666******* PP

      Rit1_C 205 taSkr..eeelseakeklekeegfkYiqGaaDDeEnWaegLtpelfWknkeellsteeeeleelieelv 271
                 taS+r  ++e         +++g  YiqGaaDD+EnWa+gLtp+lfW+++++llst++++l+eli++l+
  CCE28540.1 308 TASRRilTSE--------IDSQG--YIQGAADDTENWAHGLTPDLFWAHSKRLLSTPDAQLPELIASLL 366
                 ****533333........34578..*****************************************997 PP

>> Init_tRNA_PT  Rit1 DUSP-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   0.0   2.8e-36     5e-33       1     110 []     425     535 ..     425     535 .. 0.96

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 2.8e-36
  Init_tRNA_PT   1 sllelklgsgKkgsknLrtalpkivdfvrkrlsedkkkkilvacetGkdlsvgvaLailcklfdda.klseeqsesnitKdlirkrLqwiieaspea 96 
                   +++e++lg++K++s+nLr alp+i++fvr++l+++++++++vace+G+d svg+aLa+ c+lfd++ + +  +++  +tK  ++ +L+ +++a+p  
    CCE28540.1 425 NYMEIGLGKHKTASRNLRLALPEICAFVRAFLERGQDRQVVVACESGRDTSVGTALALSCYLFDEQgQFRVPDARLCFTKGQVKVKLASFMTAYPAG 521
                   6899***********************************************************8886555789999********************* PP

  Init_tRNA_PT  97 nPsRatLksVnsfL 110
                   nPsR+tL+sVnsfL
    CCE28540.1 522 NPSRQTLQSVNSFL 535
                   *************9 PP

>> DUF4820  Domain of unknown function (DUF4820)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6   2.4e-05     0.043     132     200 ..     215     294 ..     174     303 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.4e-05
     DUF4820 132 kkallkkirltLstliC...srpgrsip........vsseldnsartlterksekesaesseskkrnkeerdaeseeess 200
                  +al  + r +Ls+ +C      ++si          ss+ dn+ +   + ++++++++++e+++++k+e+++e+e+e++
  CCE28540.1 215 VCALCYSSRWPLSSCSCscsCSGSESIAssvhsfpsPSSKDDNKNNNDIDDTKDSPQQQDQEQAHEQKQEQKQEQEQEQQ 294
                 56778888999999999665222333335555666633333443333333444444444444444444444444444433 PP

>> Roughex  Drosophila roughex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.1   2.7e-05     0.048     257     300 ..     259     295 ..     202     312 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.7e-05
     Roughex 257 dtdgsveekkddasepdlpdqnkeedkdeqeqqaeqeeqaqqqa 300
                 +       ++d     d p+q+ +e++ eq+q+ +qe++++qq 
  CCE28540.1 259 N-------NNDIDDTKDSPQQQDQEQAHEQKQEQKQEQEQEQQG 295
                 2.......223333457889999999999999999999999985 PP

>> Endotoxin_mid  Bacillus thuringiensis delta-Endotoxin, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.6e-05     0.082     102     148 ..     446     492 ..     429     505 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.6e-05
  Endotoxin_mid 102 plstsfvrswldsgtdregvatstnwqtesfettlslrcgafsargn 148
                    p   +fvr++l+ g dr+ v ++   +  s  t+l+l c  f  +g+
     CCE28540.1 446 PEICAFVRAFLERGQDRQVVVACESGRDTSVGTALALSCYLFDEQGQ 492
                    55679*************************************99886 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.6     8e-05      0.14      67     125 ..     230     292 ..     220     304 .. 0.38

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8e-05
       SR-25  67 ssssssssssssssss....ssssdd.rkkrgkkkdkkkkkkkkkkkkkkekkkakekakaeaa 125
                 s s s s s+s +ss     s ss+d +k+++   d+k   +++ +++ +e+k++++ +++e++
  CCE28540.1 230 SCSCSCSGSESIASSVhsfpSPSSKDdNKNNNDIDDTKDSPQQQDQEQAHEQKQEQK-QEQEQE 292
                 222222222222222200113333331444444444454444443333333333332.222222 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00013      0.23     121     177 ..     239     293 ..     171     384 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
         Zip 121 saakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedke 177
                 ++ ++sv++ ++++s+++  ++ + d d+++++ +++++++ +e+++eq++e+e+++
  CCE28540.1 239 ESIASSVHSFPSPSSKDD--NKNNNDIDDTKDSPQQQDQEQAHEQKQEQKQEQEQEQ 293
                 444455555555555554..4445555555555555555555555555544223322 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.0   0.00045      0.81     247     288 ..     251     292 ..     211     317 .. 0.42

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00045
  Presenilin 247 easesskeeeseeesseksaqsseseeeseeesseaessaee 288
                  +s+++++++++ + +++s q++++e+ +e+++++++++++e
  CCE28540.1 251 PSSKDDNKNNNDIDDTKDSPQQQDQEQAHEQKQEQKQEQEQE 292
                 222222222111111111111111111111111111111111 PP

>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   8.2   0.00078       1.4     212     254 ..     252     294 ..     242     330 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00078
        CobT 212 eeedeeeeedeeeeeeeseeeeeegedddkeeqeeaaseeeee 254
                 +++d+++++++ +++++s ++++++++ ++++++++++e+e++
  CCE28540.1 252 SSKDDNKNNNDIDDTKDSPQQQDQEQAHEQKQEQKQEQEQEQQ 294
                 3333444443333333333332222222222222222222222 PP

>> DUF1068  Protein of unknown function (DUF1068)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.7    0.0061        11      43     104 ..     226     292 ..     210     300 .. 0.54

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0061
     DUF1068  43 capCsCdCss...qsllsipeglsnlsltdCakhdpevseeme..knfvdllseelklreaeaeekq 104
                  ++CsC Cs+   +s+ s  + +   s +d  k++ ++++  +  ++  +  + e k+++++ +e++
  CCE28540.1 226 LSSCSCSCSCsgsESIASSVHSFPSPSSKDDNKNNNDIDDTKDspQQQDQEQAHEQKQEQKQEQEQE 292
                 4455555555114555555567777899999999999874443103333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2396  (0.133638); expected 358.6 (0.02)
Passed bias filter:                     1284  (0.0716158); expected 358.6 (0.02)
Passed Vit filter:                       229  (0.0127726); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 3579.07
//
Query:       CCE28541.1  [L=640]
Description: related to DNAJ-like protein homolog [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-37  126.4   0.5    1.6e-36  125.6   0.5    1.4  1  DnaJ_C          DnaJ C terminal domain
    1.3e-26   92.5   1.9    2.7e-26   91.5   1.9    1.6  1  DnaJ            DnaJ domain
    5.4e-22   78.7   0.0    9.9e-22   77.9   0.0    1.4  1  HAD_2           Haloacid dehalogenase-like hydrolase
      2e-10   41.3   0.0    4.1e-10   40.3   0.0    1.5  1  Hydrolase       haloacid dehalogenase-like hydrolase
    4.1e-06   26.6   0.0     0.0003   20.6   0.0    3.1  2  NIF             NLI interacting factor-like phosphatase
     0.0001   22.3   0.1    0.00023   21.1   0.1    1.6  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
       0.01   15.9   0.0        2.2    8.5   0.0    2.5  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase
       0.12   12.8   0.0       0.85   10.1   0.0    2.1  2  DUF2710         Protein of unknown function (DUF2710)


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.5     7e-40   1.6e-36       2     148 .]     210     366 ..     209     366 .. 0.93

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 7e-40
                 EEEEEE-HHHHHH-.EEE.EEEE.............TEEEEEE-TT--TT-EEEETT-SSSS..S---EEEEEEE---SS-EEETTEEEEEEEEEHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C   2 eveleisleelykGktkkikikrnvi......kkekktlevkipaGikdgqkirlegeGdeeggepGDlivtikvkphpvFkrkgndlyveveislaea 94 
                 e +l+++leel++G+tk++kikr++       ++ +++l+v i++G k+g+ki+++g Gde  g + Dl++++++kphp +kr++ndl+++v ++l+ea
  CCE28541.1 210 ERPLPLTLEELFNGVTKRMKIKRKSFdangkrVQSDQVLDVPIKPGLKKGSKIKFSGVGDEVEGGRQDLHFIVEEKPHPLYKREDNDLVHTVVLDLKEA 308
                 67899*****************9988999997666669**********************999************************************ PP

                 HHTEEEEEE-S.S-EEEEEE...--TT-EEEETT-S-EET...TEE--EEEEEEEE-- CS
                 xxxxxxxxxxx.xxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C  95 llGgklevptl.dgkvklki...tqpgevlrikgkGmpklkkpgkrGdlyvevkvefP 148
                 l+G k +v+t+ +++++l+    tqpg+  r +g Gmp++kk g+rGd+++++kv+fP
  CCE28541.1 309 LTGWKRTVSTIeGKQINLDKggpTQPGSEDRYPGLGMPISKKVGQRGDFVIKYKVDFP 366
                 ***********555667744688**********************************9 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   1.9   1.2e-29   2.7e-26       2      63 .]       7      68 ..       6      68 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 1.2e-29
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +Y+ L v++das+deIkk Yrk alk+HPDkn+++p+a+ekFke ++Aye+LsdpekRk YD
  CCE28541.1  7 LYDTLSVKPDASQDEIKKGYRKAALKWHPDKNKDSPNASEKFKECSQAYEILSDPEKRKVYD 68
                8************************************************************9 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   4.4e-25   9.9e-22       1     177 [.     401     599 ..     401     600 .. 0.80

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 4.4e-25
       HAD_2   1 iiFDlDgTlldteeliiqafnelleey......glselseeelrkliglslrellrklgeseeeee...kieellrkyneekkk.......kevkpydg 83 
                 ++FD D+Tl+ +eel ++a +el+++        ++   ++ + +++g + r +l+ l+++   e    ++e++    +  +++       +++kp++g
  CCE28541.1 401 LLFDCDNTLVLSEELAFEACAELINKIcaergiVMKFTGQSLITEFVGQNFRGMLKTLQKEHGIEIspeDMEKY----VLMEEDaviakleTSLKPCPG 495
                 69************999988777766666665533345577789****************99988855533333....32222223344558******* PP

       HAD_2  84 vkelLeeL.keagyklgivTsksreaveekleqlgiesyF......dviv...tsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkag 172
                 v+++L+eL ++ +y+l++v+s+  + v+ ++++++ ++yF      d i+   ts  v  +KPdp++++ ale lk +++ev+ ++Ds+++ ++a +ag
  CCE28541.1 496 VESVLQELqASGKYQLAVVSSSALRRVKASVDKVDQTKYFkgpdgeDLIYsaaTSLPVPTSKPDPAIYLHALEVLKKDASEVLAIEDSKSGAMSATRAG 594
                 ********55678***************************555554456611145568888************************************** PP

       HAD_2 173 ikvia 177
                 i +++
  CCE28541.1 595 IYTVG 599
                 *9986 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.8e-13   4.1e-10       1     210 []     398     594 ..     398     594 .. 0.76

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.8e-13
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH........HHHH.HHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar........sgal.tgfatfigrgayaigkpewltaldippdlgaai 90 
                 i+t++fD+d+TL+ +e    ++ +++                   + + + +r        +  l t+f       +  +g  + l+++      +   
  CCE28541.1 398 ITTLLFDCDNTLVLSEELAFEACAEL-------------------INKICAERgivmkftgQS-LiTEFVG-----QNFRGMLKTLQKE------HGIE 465
                 78**************8888888888...................344444445556765333.2477777.....7777777777777......4444 PP

                 HHHHHHCHHHHHHTTHHHHHHHHH.HTHHBHTTHHHHHHHHHHTTE.EEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCES.........STTTSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.........xxxxxxx RF
   Hydrolase  91 gsaqsqgrtvallqaralavftia.dplkvkpeaaeavasLkaagi.evvlltgdnpetaeraanqlG.ddyfdaviasdiet.........vakpspe 177
                  s ++  + v ++   ++av++    +lk+ p+++ ++++L+a g  ++++++++  + +++  ++++  +yf++ ++ d             +kp+p 
  CCE28541.1 466 ISPEDMEKYVLME---EDAVIAKLeTSLKPCPGVESVLQELQASGKyQLAVVSSSALRRVKASVDKVDqTKYFKGPDGEDLIYsaatslpvpTSKPDPA 561
                 4555555555555...4444443337778***************877**************99999999777765555555555777888889****** PP

                 HHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 178 gkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 ++++a++ L+ + +ev++++D+  +a  + +Ag
  CCE28541.1 562 IYLHALEVLKKDASEVLAIEDSKSGAMSATRAG 594
                 **********************99998888876 PP

>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.43   9.7e+02       2      15 ..     300     313 ..     299     341 .. 0.73
   2 !   20.6   0.0   1.3e-07    0.0003       2     139 ..     400     609 ..     399     623 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.43
         NIF   2 tLVLDLDetLvhsk 15 
                 t+VLDL e L   k
  CCE28541.1 300 TVVLDLKEALTGWK 313
                 89*******98555 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.3e-07
         NIF   2 tLVLDLDetLvhskleks.k.......................................................klkvegek..........vevsvl 34 
                 tL +D+D+tLv s++  + +                                                       +                 +e s++
  CCE28541.1 400 TLLFDCDNTLVLSEE-LAfEacaelinkicaergivmkftgqslitefvgqnfrgmlktlqkehgieispedmekY------VlmeedaviakLETSLK 491
                 788889999998883.333345556667777777777777777777777777777776666666554444433321......03333334444888889 PP

         NIF  35 kRpgldefLkel..sklyevvifTasseeyaeavidildpekkllshr.....lyrescv....kkkg.....eyvKdLsllgrdlsrvvivDdspdsf 117
                   pg++  L+el  s +y++ + ++s  + ++a +d++d++k +++       +y  ++     +  +      y+  L++l++d s+v+ ++ds+  +
  CCE28541.1 492 PCPGVESVLQELqaSGKYQLAVVSSSALRRVKASVDKVDQTK-YFKGPdgedlIYSAATSlpvpT--SkpdpaIYLHALEVLKKDASEVLAIEDSKSGA 587
                 99*********744777************************8.6776667787777777455542..1346789************************* PP

         NIF 118 elqpengipiksffs.dkkDneL 139
                  +  + gi    +++   +D + 
  CCE28541.1 588 MSATRAGIYTVGYVGpYAED-KR 609
                 **999**9999998733333.33 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1     1e-07   0.00023       3      47 ..     556     599 ..     554     625 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1e-07
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEE CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvL 47 
                     +KP p +y  alevl+ d +evl+i D+ ++   +A +aG+ +v 
      CCE28541.1 556 SKPDPAIYLHALEVLKKDASEVLAIEDS-KSGAMSATRAGIYTVG 599
                     7***************************.************9987 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011        25       1      62 [.     401     470 ..     401     477 .. 0.69
   2 ?    8.5   0.0   0.00096       2.2      13      68 ..     490     548 ..     475     577 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.011
                  EEEESTTTSEETTE.E-TTHHHHHHHHHHTT......-EEEEEE---SS-HHHHHHHH.HHTT----GGG CS
  Hydrolase_6   1 flfDidGvLwrgdk.aipgaaealnalraag......kpvvllTNnsskseeeyakkl.eklgvditeeq 62 
                  +lfD+d +L+  ++ a++  ae++n + a+           l+T   +++ ++++k l ++ g++i++e+
   CCE28541.1 401 LLFDCDNTLVLSEElAFEACAELINKICAERgivmkfTGQSLITEFVGQNFRGMLKTLqKEHGIEISPED 470
                  59********9877469999******99998455444333455555555556666666555677766665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00096
                  TEE-TTHHHHHHHHHHTT.-EEEEEE---SS-HHHHHHHH.HHTT----G.GGEEEHHH CS
  Hydrolase_6  13 dkaipgaaealnalraag.kpvvllTNnsskseeeyakkl.eklgvdite.eqvvtsat 68 
                   k++pg++ +l+ l+a+g +++++++ ++ +  ++ ++k+ +   ++  + e+++ sa 
   CCE28541.1 490 LKPCPGVESVLQELQASGkYQLAVVSSSALRRVKASVDKVdQTKYFKGPDgEDLIYSAA 548
                  589**************857999******999999999995556666544466666654 PP

>> DUF2710  Protein of unknown function (DUF2710)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00038      0.85      13      49 ..     293     329 ..     286     334 .. 0.88
   2 ?   -0.5   0.0      0.75   1.7e+03      18      47 ..     496     527 ..     487     540 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00038
     DUF2710  13 sdkdlvesvlrdlseaaekwealvaeaetvtysvdlg 49 
                  d+dlv +v+ dl+ea   w+  v+  e     +d g
  CCE28541.1 293 EDNDLVHTVVLDLKEALTGWKRTVSTIEGKQINLDKG 329
                 699*********************9999887777765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.75
     DUF2710  18 vesvlrdlseaaekwealvaea..etvtysvd 47 
                 vesvl++l+ + +   a+v+ +    v  svd
  CCE28541.1 496 VESVLQELQASGKYQLAVVSSSalRRVKASVD 527
                 89*****9866555556665431234556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4612.24
//
Query:       CCE28542.1  [L=815]
Description: uncharacterized protein CPUR_02229 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.15   11.4   0.0       0.46    9.8   0.0    1.7  2  CNOT1_CAF1_bind  CCR4-NOT transcription complex subunit 1 CAF
       0.32   11.0   5.3        1.1    9.4   5.3    2.0  1  UIM              Ubiquitin interaction motif
       0.46   10.8   3.9        0.6   10.5   2.0    2.1  2  TBCA             Tubulin binding cofactor A
        7.2    7.2   8.0          1    9.9   0.5    3.2  3  ISET-FN3_linker  Unstructured linking region I-set and fnIII 


Domain annotation for each model (and alignments):
>> CNOT1_CAF1_bind  CCR4-NOT transcription complex subunit 1 CAF1-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0001      0.46      78     145 ..     551     621 ..     543     625 .. 0.85
   2 ?   -2.2   0.0      0.48   2.2e+03     120     146 ..     653     679 ..     652     686 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0001
                      HHHHHHHHHHHHHHHBS-G....GGS-HHHHHHHHHHHHHHTGGGT----TTTB-HHHHHHHHHHTT-.HH CS
  CNOT1_CAF1_bind  78 evlketlknikklLnsekt..lessserslLknLgsWLGsiTlarnkpikhknlalkeLLleayekgr.le 145
                      +v++++l+  +++L   ++  +++++e +++k    +LG++  + nkp + + + +keLLl ++ +++ ++
       CCE28542.1 551 QVVEDVLELTSRMLADMDVrmKKHHAELEQIKAKQRFLGRLLTQPNKPGRPQPMTCKELLLRGIVTQSdVV 621
                      577888888889998888765678889999*********************************98876444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.48
                      GT----TTTB-HHHHHHHHHHTT-HHH CS
  CNOT1_CAF1_bind 120 rnkpikhknlalkeLLleayekgrlev 146
                       n+p+k++++++ ++L +  ++ ++ +
       CCE28542.1 653 DNEPVKTEKIEVEQVLRQVWDETKVPL 679
                      589*************99998887655 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.3   0.00024       1.1       2      16 ..     136     150 ..     135     151 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00024
         UIM   2 EdedLqrAlalSlqE 16 
                 Eded+qrAl+ S qE
  CCE28542.1 136 EDEDMQRALRESAQE 150
                 9***********999 PP

>> TBCA  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.66     3e+03      25      48 ..     476     499 ..     463     519 .. 0.54
   2 ?   10.5   2.0   0.00013       0.6      40      75 ..     547     582 ..     495     590 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.66
        TBCA  25 qearleklkadgded.eydlkkqee 48 
                 +e +  + ++d  +d  yd k++ e
  CCE28542.1 476 EEMKAHEWRNDW-NDmAYDRKQMVE 499
                 333333333343.455666666544 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00013
        TBCA  40 eydlkkqeevleetkamipdlkkrlekavekLeell 75 
                 + + +  e vle t +m+ d++ r++k++++Le++ 
  CCE28542.1 547 DNKFQVVEDVLELTSRMLADMDVRMKKHHAELEQIK 582
                 445556699************************985 PP

>> ISET-FN3_linker  Unstructured linking region I-set and fnIII on Brother of CDO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.6      0.91   4.1e+03      21      27 ..      96     102 ..      85     114 .. 0.60
   2 ?    9.9   0.5   0.00023         1       7      29 ..     116     138 ..     110     149 .. 0.78
   3 ?   -0.4   0.0       0.4   1.8e+03       2      15 ..     793     806 ..     792     809 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.91
  ISET-FN3_linker  21 ptpPsrp 27 
                      pt Psrp
       CCE28542.1  96 PTAPSRP 102
                      3334443 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00023
  ISET-FN3_linker   7 lrpwrdaklatatpptpPsrpss 29 
                      l+  rd ++ t+ pp+ Psr+ +
       CCE28542.1 116 LEWARDDEPSTTLPPMLPSREDE 138
                      66679***************964 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.4
  ISET-FN3_linker   2 rPgttlrpwrdakl 15 
                       Pgt+ + w+d ++
       CCE28542.1 793 FPGTPAETWQDEEM 806
                      59*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.23s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5857.33
//
Query:       CCE28543.1  [L=232]
Description: probable ubiquitin-conjugating enzyme CDC34 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-30  103.5   0.0    9.8e-30  103.0   0.0    1.1  1  UQ_con          Ubiquitin-conjugating enzyme
     0.0045   16.9   2.0     0.0057   16.6   2.0    1.1  1  Myc_N           Myc amino-terminal region
     0.0081   15.8   0.1      0.013   15.2   0.1    1.2  1  UFC1            Ubiquitin-fold modifier-conjugating enzyme 1
  ------ inclusion threshold ------
      0.041   14.2   0.4       0.11   12.8   0.3    1.9  1  RWD             RWD domain
      0.068   13.3  14.5      0.095   12.8  14.5    1.2  1  YL1             YL1 nuclear protein
      0.076   12.4   0.2          4    6.7   0.1    2.1  2  Glyco_hydro_20  Glycosyl hydrolase family 20, catalytic domai
        4.9    6.5  10.4        6.4    6.1  10.4    1.2  1  SDA1            SDA1
          7    5.7   8.5        8.8    5.4   8.5    1.1  1  Astro_capsid_p  Turkey astrovirus capsid protein
        7.4    4.5   7.0        8.9    4.3   7.0    1.1  1  Sporozoite_P67  Sporozoite P67 surface antigen


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   4.9e-33   9.8e-30       1     138 [.       5     153 ..       5     155 .. 0.89

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 4.9e-33
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB..TTSTTTTEEEEEEEE--TTTTTS--EEEESS.T-SCTTBETTSBB-CGGGS.......... CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgp.edtpYeggvFklelefpedYPlkpPkvkfvt.kifHPnvdksGevcldiLk.......... 87 
                 rl++el+ l  kk++ ++ ++ +  +l++wk+ +    +d+++ g++ ++e++fp+dYP++pP++kf t  i+HPnv+k+G++c++iL+          
  CCE28543.1   5 RLMQELQAL--KKEKWVHIEVDE-LSLMRWKIGLWVVnPDSVWYGAYLRAEMKFPSDYPYQPPTFKFLTnGIHHPNVYKDGDLCISILHkpgndeqsge 100
                 688888875..455566666555.59*****98755439****************************97479*********************999999 PP

                 ..TTT--TTSHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
      UQ_con  88 ..eekWspaltlesvllsiqsLlaepnpesplnkeaakllkkdreeykkkvke 138
                   +e+W+  + +esvl s++ L+++p+ +sp++++a  l++++r+ y+ ++k+
  CCE28543.1 101 saSERWNVLHGVESVLRSVLLLMDDPEINSPAHVDASILYRDNRQLYDIMAKD 153
                 99888******************************************988865 PP

>> Myc_N  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   2.0   2.9e-06    0.0057     153     257 ..     110     229 ..      88     231 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.9e-06
       Myc_N 153 sgsaaaarlsaallqdlktsasecvdpsvvfp.....fplnkkekakkaaae.........saalaldppas.ssssasaassssssdskalssseedv 236
                  g ++  r+   l+ d +  + + vd+s+++      + +  k  ++++++e          a+l+ +p+ +  +     + s++ +d + ++s+e+ +
  CCE28543.1 110 HGVESVLRSVLLLMDDPEINSPAHVDASILYRdnrqlYDIMAKDLVEQSKQEvpsnvhmptLAELTYTPVRPvEDDVDFWNMSDEDQDFSGSASDEDMC 208
                 445555566666788888888888888888887777755544444443333344445554322333335555444455556666777777778888888 PP

       Myc_N 237 lsesdeeeeeeeeeeeeidVV 257
                   e+de+eee+++e+ee+d V
  CCE28543.1 209 DFEDDEDEEEDDDEDEEVDEV 229
                 88888888888999****976 PP

>> UFC1  Ubiquitin-fold modifier-conjugating enzyme 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   6.4e-06     0.013      44     118 ..      14      92 ..       3     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.4e-06
        UFC1  44 sdndwfklesnkeg.tkwkGkcwyvh.elkkye..fdlefdipvtypataleialpeldgktakmyrgGkicltihfkp 118
                 ++++w+++e ++ +  +wk   w+v  + + y   ++ e++ p  yp  ++ +++     +   +y++G +c++i  kp
  CCE28543.1  14 KKEKWVHIEVDELSlMRWKIGLWVVNpDSVWYGayLRAEMKFPSDYPYQPPTFKFLTNGIHHPNVYKDGDLCISILHKP 92 
                 4578*****99865379******9974667776225668889*************9999999***********998888 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   5.4e-05      0.11      51      78 ..      45      72 ..       5      98 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.4e-05
                -CEEEEEEEEE-SSTTSS--EEEEEECC CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD 51 kkpslkleiklpeeYPeeaPiislsste 78
                +   l+ e+k+p++YP+++P +++ ++ 
  CCE28543.1 45 YGAYLRAEMKFPSDYPYQPPTFKFLTNG 72
                56668899**************987765 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8  14.5   4.8e-05     0.095      12      71 ..     152     227 ..     150     232 .] 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.8e-05
                 xxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  12 kkLleqeee......................edelellFaEeedDeefeseeeeeeeensDsdfdsdeedeesdeeedeeeg 71 
                 k L+eq ++                      ed+++ +++  ++D++f++++++e+    D  f++de++ee d++edee +
  CCE28543.1 152 KDLVEQSKQevpsnvhmptlaeltytpvrpvEDDVD-FWNMSDEDQDFSGSASDEDM--CD--FEDDEDEEE-DDDEDEEVD 227
                 567777777777777777887888888888888885.5999*********9999998..45..656655443.333333222 PP

>> Glyco_hydro_20  Glycosyl hydrolase family 20, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.019        37     149     177 ..       4      32 ..       2      35 .. 0.93
   2 ?    6.7   0.1     0.002         4      96     155 ..     126     186 ..     125     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.019
  Glyco_hydro_20 149 ekvldevaelfpseyvHiGGDEvkkkqwk 177
                     + +++e+  l ++++vHi  DE++  +wk
      CCE28543.1   4 KRLMQELQALKKEKWVHIEVDELSLMRWK 32 
                     5799********************99997 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.002
  Glyco_hydro_20  96 pEidmPgHaraalkaypelvtk.ekaeqsveqsvqvevkesvlnptneetyeflekvldev 155
                     pEi+ P+H+ a +   +++      a++ veqs+q  +++  + +  e ty+ ++ v d+v
      CCE28543.1 126 PEINSPAHVDASILYRDNRQLYdIMAKDLVEQSKQEVPSNVHMPTLAELTYTPVRPVEDDV 186
                     9*********998877666555246677777777777777778888888999888887776 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  10.4    0.0032       6.4      98     143 ..     183     228 ..     140     232 .] 0.51

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0032
        SDA1  98 eddeedwevesddds..eedseggwidvesdeeeieesdesedeeeee 143
                 edd + w+++++d++   + s+++  d e+de+ +ee+d +edee +e
  CCE28543.1 183 EDDVDFWNMSDEDQDfsGSASDEDMCDFEDDED-EEEDD-DEDEEVDE 228
                 233334444443333334555556666666655.33333.34444333 PP

>> Astro_capsid_p  Turkey astrovirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   8.5    0.0044       8.8     229     266 ..     190     228 ..     129     231 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0044
                     ....XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX CS
  Astro_capsid_p 229 gaeeeisdpsdeed.eevsdeetdtevesdeDeddevdr 266
                     ++++e +d s  ++ e++ d e d++ e+d+Ded+evd+
      CCE28543.1 190 NMSDEDQDFSGSASdEDMCDFEDDEDEEEDDDEDEEVDE 228
                     344445554433322559999999999999999999997 PP

>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   7.0    0.0045       8.9      76     130 ..     162     222 ..     150     232 .] 0.63

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0045
  Sporozoite_P67  76 vptpvseeii...trsfqepvsqeselqsdteineddkGskedse...edddeeeeednks 130
                     vp+ v  +++   t +   pv+ ++++ +  + ++d +Gs +d++    +dde+eeed++ 
      CCE28543.1 162 VPSNVHMPTLaelTYTPVRPVEDDVDFWNMSDEDQDFSGSASDEDmcdFEDDEDEEEDDDE 222
                     5555555544111445556699999999999999999999999974432455555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1676.28
//
Query:       CCE28544.1  [L=1616]
Description: probable cpc-3 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-76  257.0   2.6      2e-76  257.0   2.6    2.3  2  HGTP_anticodon2  Anticodon binding domain of tRNAs
    3.1e-69  233.3   1.3    1.5e-30  106.5   0.0    3.8  4  Pkinase          Protein kinase domain
    5.3e-41  140.6   0.7    2.6e-15   56.4   0.0    4.0  4  Pkinase_Tyr      Protein tyrosine kinase
    1.7e-19   70.2   0.0    1.7e-19   70.2   0.0    2.5  3  tRNA-synt_His    Histidyl-tRNA synthetase
    4.4e-10   39.9   0.0    1.3e-09   38.3   0.0    1.9  1  RWD              RWD domain
     0.0049   17.1   4.1     0.0049   17.1   4.1    2.2  2  Med21            Subunit 21 of Mediator complex
  ------ inclusion threshold ------
      0.058   13.3   5.5        6.1    6.7   0.0    3.3  3  APH              Phosphotransferase enzyme family
       0.13   11.2   0.2         10    4.9   0.0    2.2  2  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase


Domain annotation for each model (and alignments):
>> HGTP_anticodon2  Anticodon binding domain of tRNAs
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   5.8      0.82   1.8e+03     114     171 ..     161     225 ..     105     242 .. 0.44
   2 !  257.0   2.6   8.9e-80     2e-76       1     263 []    1366    1614 ..    1366    1614 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.82
  HGTP_anticodon2 114 aksskssaessqkedeass...esseele...ealaskeerqkev..rvlvaatrskksnkrekve 171
                       k+  s++e+ ++++++     + +++ e   +++++++e+++++   ++ +  r++++ k++ v+
       CCE28544.1 161 GKQLPSLEEEREQHEAELVllaQ-KQKEEqerQKQQETREEERVMseMLQLQIDRQRQKAKESRVS 225
                      33333333333333332224431.222222222222222222221112344444555444555444 PP

  == domain 2  score: 257.0 bits;  conditional E-value: 8.9e-80
  HGTP_anticodon2    1 WkpkRcDVlVasfdksiLrtsgvellqeLWahnIsAdlaldasksleelvskarddgvswiviikqqnkskskekplkvkslekke..dvdl 90  
                       ++++RcD+lVasfd ++Lr++g+e+lq LW h+IsA++a da+ s+e+l+sk+rd+++swi+++k+    +s+   lk+k++++k+  dvdl
       CCE28544.1 1366 FTERRCDILVASFDTTLLRSTGLEILQLLWDHDISAEMAKDAR-SPEDLLSKHRDENYSWIIVVKP----DSM---LKIKTMHRKDvpDVDL 1449
                       678***********************************99999.**********************....889...**************** PP

  HGTP_anticodon2   91 dldelvswlkqeirerekereesaksskssaessqkedeassesseeleealaskeerqkevrvlvaatrskksnkrekveqddAqeaaael 182 
                         ++l+ wl+ e++er+  r  s+ +s  sa+++  e+++ss       +  +s+  +++ev+vlva t+skk+n+r++v+q  Aq +aa+l
       CCE28544.1 1450 PQSQLMVWLRPELKERD-ARAFSKLKS--SASHAI-EATGSS-------SGPQSEARQDQEVKVLVASTKSKKFNRRQVVDQ--AQISAANL 1528
                       ****************9.443333322..222333.223322.......1233456799*********************99..******** PP

  HGTP_anticodon2  183 vksllngpiaaidtrdevlemisetsLsdkdeWrkviqsvntaersyateihnaLs.....keaakgkkwailynfrtgkcilydL 263 
                       v+s+l+g i+ai+t+d+v+ +++etsLsd+++W++v+q+v   er+y++e+h +L      +e + ++k+a++ynfrtg+c++ydL
       CCE28544.1 1529 VRSFLDGAILAIETTDQVISLLQETSLSDHESWKRVEQAVTMNERKYVRELHVQLDtwragYEGKGKSKHAFIYNFRTGTCVYYDL 1614
                       ********************************************************7766555556677****************9 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   1.3       7.1   1.6e+04      33      55 ..     185     207 ..     171     219 .. 0.58
   2 !   77.5   0.0   4.5e-25     1e-21      42     261 ..     312     542 ..     275     545 .. 0.80
   3 !   45.8   0.0   2.2e-15   4.9e-12       2      69 ..     595     660 ..     594     668 .. 0.93
   4 !  106.5   0.0   6.7e-34   1.5e-30      72     260 ..     769     966 ..     759     969 .. 0.86

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 7.1
                 ECHCHCHHHHHHHHHHHHHHHHH CS
     Pkinase  33 kkekakkkkekkvlrEikilkkl 55 
                 +ke+++ +k++++++E +++ ++
  CCE28544.1 185 QKEEQERQKQQETREEERVMSEM 207
                 33333444445566666666554 PP

  == domain 2  score: 77.5 bits;  conditional E-value: 4.5e-25
                 H.........HHHHHHHHHHHHHSCTTB--EEEEEEE...........SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE CS
     Pkinase  42 e.........kkvlrEikilkklkhpnivrlyevfee...........kdelylvleyveggeladllerkgslseeeakkiakqilegleylHskgii 120
                 +         ++ l+ +k +k+++h+++v ++++  e             ++ +++ ++e+g+l++lle  g+++  +++++++ +l +l++lH++++ 
  CCE28544.1 312 KefkkqlqslESRLQDLKTMKRIHHRHLVDVLDFKFEsgtpanptaahVWTVSILTPMAEKGSLEELLELAGHIEIGKVRSWTRDLLDALNFLHNQNFA 410
                 223344555678899******************97667*****996644445599**************99**************************** PP

                 -SS-SGGGEEEETTTE....EEE-SGTTSEESSSSCS......BCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHH CS
     Pkinase 121 HrDlKpeNiLidekge....lKitDFGlakelesssk......ltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekve 207
                 H D+ p N+ + ++       K++D    +e++s s+        s   + ++l+PE+   ++ +y+ k+D+W  G++++++++g  ++++ ++     
  CCE28544.1 411 HQDIHPRNVVLFRESRgeivPKLSDAWYQREIHSASTpkpglpGLSSAKSAYWLPPEIAgqSKPQYTYKTDIWEFGIVFVQMIFGLDVLRKYSSPR--- 506
                 ********9887333345889*************9999999997788899*********8777899************************333322... PP

                 HHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 208 keldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqh 261
                  +l++                   ++s+++++l+++ +k d++kR+   el ++
  CCE28544.1 507 -NLME-----------------SLTLSQSLQELVSRFFKDDKQKRPRPFELGSS 542
                 .4444.................34679999999999999999999877666555 PP

  == domain 3  score: 45.8 bits;  conditional E-value: 2.2e-15
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee 69 
                 +++ +lG+G+fG+V+ka++k +g+i+A+Kk+ +++  + +e  +l+E+++l +l+hp +vr+y+++ e
  CCE28544.1 595 VEEGRLGKGGFGEVVKARKKLDGQIYAIKKVTQRSHASLTE--ILKEVRLLSQLSHPAVVRYYNTWVE 660
                 57789*****************************9999887..*********************9976 PP

  == domain 4  score: 106.5 bits;  conditional E-value: 6.7e-34
                 EEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEESSSSCS............. CS
     Pkinase  72 elylvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge....lKitDFGlakelesssk............. 153
                  ly+ +ey+e+ +l dl++r    s  ++ ++++qilegl ++H  +i+HrDlKpeNi+i+++ e    +Ki+DFGla+  + s +             
  CCE28544.1 769 ILYISMEYCEKRTLRDLISRGLYKSTVDIWRLFRQILEGLMHIHGLSIVHRDLKPENIFISSSIEgvdnIKIGDFGLATSGQFSVDktadsnndnndtl 867
                 589****************99999999**********************************76556688*********9887777677999******** PP

                 ....BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SS CS
     Pkinase 154 ....ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkd 248
                     +t  +gt +Y APEv ++ +   ++ ++slG+i++e+ +  ++     +k +v  +l+q   ++ +l          +  +++ ++++ +l++ +
  CCE28544.1 868 etvdMTRSIGTAYYAAPEVRSDAHGMYSTKMYSLGIIFFEMCYPPMLGM---EKADVIGKLRQ---LTPVL------PSDFKPAEKTQTEIVLSLVNHN 954
                 *******************98888899999***********55444444...55556666666...44444......4556667899999********* PP

                 GCCSTTHHHHHT CS
     Pkinase 249 pkkRltaeellq 260
                 pk+R++ + ll+
  CCE28544.1 955 PKERPSSAGLLK 966
                 *****9887766 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.4         2   4.4e+03      33      58 ..     182     207 ..     165     213 .. 0.64
   2 !   56.4   0.0   1.2e-18   2.6e-15      41     202 ..     317     495 ..     274     539 .. 0.77
   3 !   25.0   0.0   4.5e-09     1e-05       5      71 ..     598     659 ..     594     664 .. 0.88
   4 !   54.6   0.0   4.1e-18   9.3e-15      76     254 ..     770     963 ..     760     967 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2
                  EEEESTTSSHHHHHHHHHHHHHHHTS CS
  Pkinase_Tyr  33 vKtlkeeateeekeelleeakimkkl 58 
                    + kee+++++++e  ee ++m+++
   CCE28544.1 182 AQKQKEEQERQKQQETREEERVMSEM 207
                  23445666777799999999999987 PP

  == domain 2  score: 56.4 bits;  conditional E-value: 1.2e-18
                  SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSS...........EEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEES CS
  Pkinase_Tyr  41 teeekeelleeakimkklkhpnivkllgvctkeep...........llivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHr 127
                  + ++ e+ l+++k+mk+++h+++v +l +  ++++           + i+t ++++G+L++ L+     ++++ ++ s++ ++ +++++L+++++ H+
   CCE28544.1 317 QLQSLESRLQDLKTMKRIHHRHLVDVLDFKFESGTpanptaahvwtVSILTPMAEKGSLEELLELA--GHIEIGKVRSWTRDLLDALNFLHNQNFAHQ 412
                  33446778899*****************99955544677889988899***************998..9***************************** PP

                  T-SGGGEEEEE....TTEEEE-STTTHEETTTSSEE...EETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHHTTS CS
  Pkinase_Tyr 128 dlaarNvLlse....nkvvkisDfGLardiekddey...vkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftlg 202
                  d+  rNv+l +    + v k+sD    r+i++ ++        ++  +  W++pE+  ++k  +t k+D+W fG++   ++  g
   CCE28544.1 413 DIHPRNVVLFResrgEIVPKLSDAWYQREIHSASTPkpgLPGLSSAKSAYWLPPEIAGQSKpqYTYKTDIWEFGIVFVQMIF-G 495
                  ******9997755544577***********87777734445556677888******9998888*************998876.3 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 4.5e-09
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct 71 
                   +lG+G fG+Vv+++ k     + +  a+K+++++++++  +e+l+e++++++l+hp +v+++   +
   CCE28544.1 598 GRLGKGGFGEVVKARKK----LDGQIYAIKKVTQRSHAS-LTEILKEVRLLSQLSHPAVVRYYNTWV 659
                  579***********999....777889*****8888777.9********************998765 PP

  == domain 4  score: 54.6 bits;  conditional E-value: 4.1e-18
                  EEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE....TTEEEE-STTTHEET......TTSSEE.... CS
  Pkinase_Tyr  76 llivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse....nkvvkisDfGLardi......ekddey.... 159
                  l+i +ey+++ +L++ + +      ++ d+ ++  q+ +G+ +++  ++vHrdl   N+++s+     + +ki+DfGLa +       + d++     
   CCE28544.1 770 LYISMEYCEKRTLRDLISRG--LYKSTVDIWRLFRQILEGLMHIHGLSIVHRDLKPENIFISSsiegVDNIKIGDFGLATSGqfsvdkTADSNNdnnd 865
                  7899*************997..666788999*******************************97766679********97542211111111112223 PP

                  ....EETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BB..TTSBHHHHHHHHHHT-SSGGGS-- CS
  Pkinase_Tyr 160 ....vkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekp..ekcpeelyelmkkcweedpeeRpt 251
                      v+ +++     + apE+ ++ +   ++ ++s G++ +E++     p+ g+++++v+ kl++ + +     + ++++ +e++ +  +++p+eRp+
   CCE28544.1 866 tletVDMTRSIGTAYYAAPEVRSDAHGMYSTKMYSLGIIFFEMCY---PPMLGMEKADVIGKLRQLTPVLPSdfKPAEKTQTEIVLSLVNHNPKERPS 960
                  333223333344556779********999999***********99...9**************888875544014455667899*************8 PP

                  HHH CS
  Pkinase_Tyr 252 fse 254
                   + 
   CCE28544.1 961 SAG 963
                  665 PP

>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.2   2.5         8   1.8e+04     170     208 ..     173     210 ..     147     230 .. 0.44
   2 !   70.2   0.0   7.7e-23   1.7e-19      49     310 .]    1059    1343 ..    1049    1343 .. 0.83
   3 ?   -0.0   0.2      0.19   4.2e+02     150     206 ..    1522    1579 ..    1491    1587 .. 0.80

  Alignments for each domain:
  == domain 1  score: -6.2 bits;  conditional E-value: 8
                    HHHHHHHHHHCT-HHHHHHHHHCCTTHHHCCHCC...HC CS
  tRNA-synt_His 170 leeallaalarkdlaelkelaaeaglkealrellkalel 208
                    + ea l +la+k+ +e ++  ++ +++e++r + + l+l
     CCE28544.1 173 QHEAELVLLAQKQKEEQERQKQQ-ETREEERVMSEMLQL 210
                    22222333333333333333332.233333333333333 PP

  == domain 2  score: 70.2 bits;  conditional E-value: 7.7e-23
                     CCHHHS-EEE-TTSSEEEE-SSSHHHHHHHHHHHHHTSS-EEEEEEEEEEESS-SSTT--CCEEEEEEEEESS-SHH...HHHHHHHHHHHHHH CS
  tRNA-synt_His   49 edldqtfklvDqsgrllglRaDiTpqvaRiaahrlnrerplRlcYaGsvlrtrpdglgrsreplQvGaEliGaegle...adlEvlsllleale 139 
                     +  d++++l D +g +l l  D+T+  aR+ a+  +++ p+R  ++Gsv+r ++d  g+   +  v   ++ ++ l+   +++Evl++l e+++
     CCE28544.1 1059 HYGDNAVQLLDPNGTVLQLPYDLTMGNARMIAKQSAGSMPQRTFSFGSVYRDKQDT-GQPTIFGEVDFDIVTTDALDlalKEAEVLKVLDEIVH 1151
                     4556899*********************************************9996.8999999999*****99887333599*********97 PP

                     HH...CTSSSEEEEEEETCHHHHHHHHTT--HHHHHHHHHHHHCT-HHHHHHHHHCCTTH.........HHCCHCC....HCCHCCCHHHHCHC CS
  tRNA-synt_His  140 aa...agvkelrldlghvglvralleaaglsesleeallaalarkdlaelkelaaeaglk.........ealrellkal.elygdaevleeale 220 
                      +   ++ +++ + +gh +l++ ++e++g++ + ++   +al+r ++ +    +++ +++         ++ ++ l+++  +  ++++  ++++
     CCE28544.1 1152 -TfpsLSQSQMCFHIGHSDLLQFIFEHCGVETTSRRLAADALSRLNIHN--HTWQKVKMElrspaigvsATSVDELQKFdFRDTPNKAFSRLKT 1242
                     .623355699999********************************9988..444444444557777777999999****888888889999888 PP

                     CHCTHHHHHHHHHHHHHHHHHHHHHHH..H-TTEEE-TT--.TTTTT--SEEEEE.EETT-SS-SEEEEEECTTTGGG..T-.....--EEEEE CS
  tRNA-synt_His  221 alaaapalqaaldeleelaallealak..pevrvtlDlael.rgyeYytGlvFaa.yaegvgqaiarGGrYdelgaaf..gr.....arpAtGf 303 
                      + + +  q+a +++ +l +++e +++   + ++++++    ++  Y  G+ F++ y ++v++ +a GGrYd+l+++   ++     +r A+Gf
     CCE28544.1 1243 LFEGGDMYQRASSTMGHLKEVAEYAKRfgVATKIYVNPLNSiKENFYAGGFLFSClYDKKVKDVFAAGGRYDHLIKEQrlKTggryeERHAIGF 1336
                     8888888888887777777777777666678999999876515566667899*9647788999************99864226668899***** PP

                     EEEHHHH CS
  tRNA-synt_His  304 sldleal 310 
                     sl  e+l
     CCE28544.1 1337 SLAWERL 1343
                     **98876 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.19
                     EEEETCHHHHHHHHTT--HHHHHHHHHHHHCT-HHHHHHHHH.CCTTHHHCCHCC... CS
  tRNA-synt_His  150 dlghvglvralleaaglsesleeallaalarkdlaelkelaa.eaglkealrellkal 206 
                     +++ ++lvr+ l+ a l+ ++++++ ++l++ +l++ +++ + e++++ ++r+ ++ l
     CCE28544.1 1522 QISAANLVRSFLDGAILAIETTDQVISLLQETSLSDHESWKRvEQAVTMNERKYVREL 1579
                     578999***************************9999888774455666666666655 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0     6e-13   1.3e-09       1     114 [.      40     149 ..      40     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 6e-13
                 HHHHHHHHHHHHHSTTTCCCCH.......T--EE--S-EEEEEEECECCCC....TT-CEEEEEEEEE-SSTTSS--EEEEEECCSS-HHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD   1 eeqeqEleaLesIypdefevie.......nenysikleikikldededeedsefeekkkpslkleiklpeeYPeeaPiislsstenlpkeqvksleekl 92 
                 e+q++El aL++Iy+d+f+  +       ++++s    ++i+++ + d         ++   ++ + ++ +YP ++P ++++   +l ++ + ++ + +
  CCE28544.1  40 ELQQNELLALQAIYGDDFVMQAathgawkKTEPS----FDIRINASAD---------NDFAATIGFVMTATYPRTPPLLTIKGLSDLREATKFKIRKFI 125
                 78****************6666674444444444....5555555544.........5789************************************** PP

                 HHHHHHT..TTS--CHHHHHHHHH CS
                 xxxxxxx..xxxxxxxxxxxxxxx RF
         RWD  93 eelaeen..lgepvifalidwlke 114
                 + + +e+    ++++  +++ +++
  CCE28544.1 126 DTEPKEFakEPQEMVDRIVEGIRD 149
                 ****99977777788777776665 PP

>> Med21  Subunit 21 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   4.1   2.2e-06    0.0049      53     135 ..     120     207 ..      45     214 .. 0.75
   2 ?   -2.2   0.1         2   4.5e+03      98     129 ..    1491    1522 ..    1488    1532 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.2e-06
       Med21  53 p....qeekeepepdspeefaatqrelardlilkeqqIeyLIssLPgigsseeeqeerikeLeeelre.veeereekvkekeellkkv 135
                 +     ++++++ +++p+e+ +++ e  rd++  + q e+  ++LP+++++ e+ e+++  L+++ +e  e +++++ +e e++++++
  CCE28544.1 120 KirkfIDTEPKEFAKEPQEMVDRIVEGIRDILEDAAQAEASGKQLPSLEEEREQHEAELVLLAQKQKEeQERQKQQETREEERVMSEM 207
                 1445535666777899********************************************9988655404555666677777766654 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2
       Med21   98 sseeeqeerikeLeeelreveeereekvkeke 129 
                  +se+ q++++k L +  +  + +r+++v +++
  CCE28544.1 1491 QSEARQDQEVKVLVASTKSKKFNRRQVVDQAQ 1522
                  58999999999999999999999999998876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   2.2      0.32   7.1e+02      91     147 ..     147     202 ..     139     231 .. 0.73
   2 ?    5.3   0.2     0.007        16     137     181 ..     375     422 ..     316     430 .. 0.73
   3 ?    6.7   0.0    0.0027       6.1     164     199 ..     812     849 ..     737     855 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHHCCHHCH..-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHH CS
         APH  91 lpellealgeflaalhqvd.paalpladflaqdlellrqlesatarllaselldllee 147
                 ++++le+++++ a   q++  ++ + +++++  l  + q e++  r+++ e+++  e+
  CCE28544.1 147 IRDILEDAAQAEASGKQLPsLEEEREQHEAELVLLAQKQKEEQE-RQKQQETRE-EER 202
                 6899**************99999999999998777777777775.555555555.122 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.007
                 CGCCTCC.HHHHHHHHHHHHHHHH--S...SS-EEEE-SS-SGGGEEEC CS
         APH 137 laselld.lleeleeqvlaalaallpg...elptvllHgDlhpgNllvd 181
                 l ++l+    +e+ + v+ + ++ll++      + + H D+hp+N+++ 
  CCE28544.1 375 LEELLELaGHIEIGK-VRSWTRDLLDAlnfLHNQNFAHQDIHPRNVVLF 422
                 443333354555556.77777777777777999*************986 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0027
                 S-EEEE-SS-SGGGEEEC.....TTEEEEE---TT-EEE CS
         APH 164 lptvllHgDlhpgNllvd...pddgrvtGviDfedaglg 199
                    +++H+Dl+p N+ +    ++ + +  + Df++a+ g
  CCE28544.1 812 HGLSIVHRDLKPENIFISssiEGVDNI-KIGDFGLATSG 849
                 5679************99766444444.35577777666 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0046        10     297     317 ..     406     426 ..     398     443 .. 0.79
   2 ?    3.8   0.0    0.0099        22     299     317 ..     815     833 ..     766     845 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0046
  Pox_ser-thr_kin 297 cenflhvDlkPdniLifdske 317
                       +nf h D+ P n+++f +++
       CCE28544.1 406 NQNFAHQDIHPRNVVLFRESR 426
                      589**************8643 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0099
  Pox_ser-thr_kin 299 nflhvDlkPdniLifdske 317
                        +h DlkP+ni+i  s e
       CCE28544.1 815 SIVHRDLKPENIFISSSIE 833
                      479**********988854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1790  (0.0998383); expected 358.6 (0.02)
Passed bias filter:                      721  (0.0402142); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.21u 0.30s 00:00:01.51 Elapsed: 00:00:00.49
# Mc/sec: 9878.00
//
Query:       CCE28545.1  [L=645]
Description: uncharacterized protein CPUR_02232 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-39  135.3  13.4    1.4e-39  135.3  13.4    3.7  4  Cut12           Spindle pole body formation-associated protei
     0.0043   16.8   4.0       0.78    9.7   0.1    4.0  3  Pox_A_type_inc  Viral A-type inclusion protein repeat
  ------ inclusion threshold ------
       0.87    9.7   0.0       0.87    9.7   0.0    4.2  4  ABC_tran_Xtn    ABC transporter
        8.9    6.2  17.3        5.1    7.0   3.1    4.2  4  Sec8_exocyst    Sec8 exocyst complex component specific domai


Domain annotation for each model (and alignments):
>> Cut12  Spindle pole body formation-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3  13.4   3.1e-43   1.4e-39      25     142 ..     124     241 ..     106     244 .. 0.83
   2 ?   -1.0   0.1      0.34   1.5e+03     103     139 ..     243     279 ..     241     288 .. 0.69
   3 ?    0.4   1.9      0.13   5.8e+02      79     131 ..     309     357 ..     301     366 .. 0.79
   4 ?   -0.7   0.6      0.29   1.3e+03      95     128 ..     391     424 ..     366     430 .. 0.74

  Alignments for each domain:
  == domain 1  score: 135.3 bits;  conditional E-value: 3.1e-43
       Cut12  25 ekaekkee..kkesedeeee.kdeseeedeeDvTidLnePrSqSGkYWkseFesyrsdaelEieklikyrslaksyakkKdeealrlkeklkeEeekva 120
                 +++   e+  ++e e ee+e +de+e   ++DvT+dLneP+SqSG+YWk+eF +y+++a++E+ekl+ky++lak+ya++Kd+ea++l+e+l++E+++v 
  CCE28545.1 124 DSRP--EDvsDDEWE-EEDEgEDEDEGPGSRDVTVDLNEPHSQSGRYWKEEFLKYHQEARAEMEKLLKYKQLAKTYAQQKDAEAIQLAERLRDEQQRVI 219
                 2222..222123333.44555888899999********************************************************************* PP

       Cut12 121 emekkvselaskvvskksksde 142
                 +mekk+++ as++++++++s+e
  CCE28545.1 220 KMEKKIADNASQLAERRQQSSE 241
                 *****************99875 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.34
       Cut12 103 eealrlkeklkeEeekvaemekkvselaskvvskksk 139
                 +e+++l +kl +     ++  ++v++l +++ + +++
  CCE28545.1 243 KEITDLLDKLNKQSTLATQYRHRVQDLEAQMEELRKQ 279
                 5777777777777777777777777777777655544 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.13
       Cut12  79 daelEieklikyrslaksyakkKdeealrlkeklkeEeekvaemekkvselas 131
                 ++++E+++    r  +k++   +d e+ +lk +lk+ + ++a +e++ ++ +s
  CCE28545.1 309 ETRRELRRA---RGQLKELDSLRD-EVFDLKMQLKKAQVQIAVHEQEEARATS 357
                 566666666...777777766666.899****************999887665 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.29
       Cut12  95 ksyakkKdeealrlkeklkeEeekvaemekkvse 128
                 ++y k  d+   + k  l++ ++k++e +k+v++
  CCE28545.1 391 EAYMKDSDARDADTKSVLERAQAKITELKKEVKS 424
                 5566666666666677788888899888888865 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.1    0.0056        25       4      18 ..     260     274 ..     260     278 .. 0.85
   2 !    9.7   0.1   0.00017      0.78       2      19 ..     323     340 ..     322     342 .. 0.91
   3 ?    0.4   0.1      0.15   6.7e+02       4      16 ..     409     421 ..     408     423 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0056
  Pox_A_type_inc   4 srlRsRIsDLErqLs 18 
                     +++R R+ DLE q +
      CCE28545.1 260 TQYRHRVQDLEAQME 274
                     58*********8865 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00017
  Pox_A_type_inc   2 EmsrlRsRIsDLErqLse 19 
                     E+++lR+++ DL+ qL +
      CCE28545.1 323 ELDSLRDEVFDLKMQLKK 340
                     9**************976 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.15
  Pox_A_type_inc   4 srlRsRIsDLErq 16 
                     +r + +I +L+++
      CCE28545.1 409 ERAQAKITELKKE 421
                     78899******97 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  12.3     0.055   2.5e+02       4      70 ..     182     248 ..     179     255 .. 0.75
   2 ?    6.2   6.5    0.0024        11      19      76 ..     221     279 ..     221     287 .. 0.88
   3 ?   -2.7   1.1       1.4   6.2e+03      29      47 ..     313     331 ..     303     375 .. 0.61
   4 ?    9.7   0.0   0.00019      0.87       6      63 ..     381     438 ..     377     441 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.055
  ABC_tran_Xtn   4 engklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLekl 70 
                   e +kl +Yk   ++y ++k+++  q +++ + +q+++ k+e+ I+ ++++ ++ +q+ s  k +  l
    CCE28545.1 182 EMEKLLKYKQLAKTYAQQKDAEAIQLAERLRDEQQRVIKMEKKIADNASQLAERRQQSSESKEITDL 248
                   6778999999999******998888888888888888888888888888787777777777766554 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0024
  ABC_tran_Xtn  19 leekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLe.klekiekp 76 
                   +e+k ++ + q +++++q  e k++ +  +++ ++ + a+q + r++ Le ++e++ k+
    CCE28545.1 221 MEKKIADNASQLAERRQQSSESKEITDLLDKLNKQSTLATQYRHRVQDLEaQMEELRKQ 279
                   5788899999***************************************9345888776 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.4
  ABC_tran_Xtn  29 qqkayekqqkeikkleefI 47 
                   + ++++ q ke++ l++ +
    CCE28545.1 313 ELRRARGQLKELDSLRDEV 331
                   4444444444444444333 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00019
  ABC_tran_Xtn   6 gklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsr 63 
                   g+l + k ++++y++  ++r +  ++  e+ q++i +l++ ++ ++ +++ a +  sr
    CCE28545.1 381 GQLGQLKLDFEAYMKDSDARDADTKSVLERAQAKITELKKEVKSLKGTGSGAGRGASR 438
                   5666667789************************************999999888877 PP

>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.1    0.0011       5.1      86     135 ..     209     258 ..     189     265 .. 0.86
   2 ?    1.6   0.2     0.051   2.3e+02      84     113 ..     296     325 ..     291     340 .. 0.82
   3 ?    4.0   0.1    0.0096        43      73     119 ..     347     393 ..     339     396 .. 0.84
   4 ?    1.8   0.2     0.044     2e+02      82     113 ..     395     426 ..     388     430 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0011
  Sec8_exocyst  86 ekvselKesleeakkklstkkkeLkelnarsakykevieiLdaieelkkv 135
                   e++++ ++++ + +kk+ ++ ++L e  ++s++ ke+ ++Ld++++  ++
    CCE28545.1 209 ERLRDEQQRVIKMEKKIADNASQLAERRQQSSESKEITDLLDKLNKQSTL 258
                   56667788899999******************************986665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.051
  Sec8_exocyst  84 sqekvselKesleeakkklstkkkeLkeln 113
                   s  +vs  +e+l e++++l + + +Lkel 
    CCE28545.1 296 SSPSVSTTQEKLTETRRELRRARGQLKELD 325
                   556778888899999999999999999886 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0096
  Sec8_exocyst  73 sYskilssiqesqekvselKesleeakkklstkkkeLkelnarsaky 119
                    +++     ++s  +++el+  l++ak++  +k+ +L +l+ +  +y
    CCE28545.1 347 VHEQEEARATSSGPRTQELRALLKAAKEESRRKDGQLGQLKLDFEAY 393
                   5555556668889999************************9887776 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.044
  Sec8_exocyst  82 qesqekvselKesleeakkklstkkkeLkeln 113
                   ++s  + ++ K  le a++k+++ kke k l+
    CCE28545.1 395 KDSDARDADTKSVLERAQAKITELKKEVKSLK 426
                   56666667777777777777777777766664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2565  (0.143064); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.07u 0.30s 00:00:01.37 Elapsed: 00:00:00.49
# Mc/sec: 3990.91
//
Query:       CCE28546.1  [L=328]
Description: uncharacterized protein CPUR_02233 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-23   84.0   0.8    1.4e-23   84.0   0.8    1.8  2  UreF      UreF
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.024   14.4   0.0    1.5  1  DUF429    Protein of unknown function (DUF429)


Domain annotation for each model (and alignments):
>> UreF  UreF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.9      0.55   4.9e+03      40      64 ..      22      46 ..      11      47 .. 0.80
   2 !   84.0   0.8   1.5e-27   1.4e-23       3     129 ..     115     281 ..     113     283 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.55
                HHHHHHHHHHHHH--SHHHHHHHHH CS
        UreF 40 aalrelddwllatretaelrlaseq 64
                 +++el+++l a+++   +r+ s+q
  CCE28546.1 22 REIAELERRLAAAKLRLRRRETSTQ 46
                4899999999999999999988887 PP

  == domain 2  score: 84.0 bits;  conditional E-value: 1.5e-27
                 SHHHHHHHHHHHHTTHHHHTHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHH-......................... CS
        UreF   3 deaslaawledqLllglarldlavlarayraaragdaaalrelddwllatretaelrlaseqmGrsllrllrkl......................... 76 
                 + ++++ +l+ + l ++a + l+++++ +     +d ++l+ ldd+l+a+  + + r+as+++Gr+ll ++++                          
  CCE28546.1 115 NTSTFSSFLALS-LSSFAATTLPFVLATH-----RDPSSLASLDDQLDAAVVCTVGRRASVAQGRALLSIWERSfrkalpssqadvpylrefstllrqa 207
                 67789999****.899*************.....4778*******************************************999999999999888888 PP

                 ......................-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHH CS
        UreF  77 ............t.........hypvafglaaaalgipleeallaylfswaenlvsAavklvplGqtagqrila 129
                             +         h++ +fg+++a +g++l++++++yl s++++lvsAav++  +G++++q++la
  CCE28546.1 208 ktpaeeqgsaggEedvpplvsaHLAPLFGVICAIVGLSLRQTAYVYLVSHVKALVSAAVRASMFGPYQAQKVLA 281
                 8777766665550566677788**************************************************98 PP

>> DUF429  Protein of unknown function (DUF429)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.7e-06     0.024     168     201 ..     139     174 ..      92     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.7e-06
      DUF429 168 leseakkeklvaadDvlDAvacaltArra..arGra 201
                 l++++ ++ l+  dD+lDA++++ ++rra  a+Gra
  CCE28546.1 139 LATHRDPSSLASLDDQLDAAVVCTVGRRAsvAQGRA 174
                 4455588899*******************8899987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2357.15
//
Query:       CCE28547.1  [L=388]
Description: related to CWC2-involved in mRNA splicing [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-39  134.7   0.7    3.2e-39  134.0   0.1    1.7  2  Torus        Torus domain
    6.4e-08   32.3   0.0    1.3e-07   31.4   0.0    1.6  1  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
      0.001   19.0   0.0     0.0022   18.0   0.0    1.5  1  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
     0.0076   16.1   0.6      0.016   15.1   0.6    1.4  1  zf-CCCH      Zinc finger C-x8-C-x5-C-x3-H type (and similar)
  ------ inclusion threshold ------
          1    9.5   3.0       0.45   10.6   0.3    1.9  2  zf_CCCH_4    Zinc finger domain


Domain annotation for each model (and alignments):
>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.0   0.1   8.9e-43   3.2e-39       2     109 .]      43     148 ..      42     148 .. 0.96
   2 ?   -3.1   0.1       3.5   1.2e+04       6      33 ..     216     242 ..     213     267 .. 0.49

  Alignments for each domain:
  == domain 1  score: 134.0 bits;  conditional E-value: 8.9e-43
                 XXX----S-SS--------SSS-----TTSS----S-THHHHS-----S----HHHH----HHHHSTT--B-HHHHHT--SSGGG-SSB-S---SS--- CS
       Torus   2 kkrparkqvdeeelksekeeqegeeyNiWynkwsgeekekkkkskekaktrcnikkdsGytkadkekesyfClfFarGlCakGkkCeylHrlPteedlk 100
                 kkrpar+q+d++e+ se ++q+g++yNiW+nkw+g+++e    +++kak rcn+++dsGyt ad++++s+fCl FarG+C+ G++C++lHr+P + dl+
  CCE28547.1  43 KKRPARVQMDPSEFGSEPPPQTGTTYNIWFNKWAGGDREV--YQQTKAKGRCNLARDSGYTLADNATGSFFCLRFARGICPLGRDCTFLHRIPGTFDLF 139
                 89********************************987665..68999**************************************************** PP

                 -TTB-TTS- CS
       Torus 101 ekkvDiFGR 109
                 + +vD+FGR
  CCE28547.1 140 NPNVDCFGR 148
                 ********9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.5
                 ---S-SS--------SSS-----TTSS- CS
       Torus   6 arkqvdeeelksekeeqegeeyNiWynk 33 
                 a  q  +e +++++  +++e  N+ ++ 
  CCE28547.1 216 ANAQFAREAMAHQSL-DHDEILNVRWAT 242
                 556665555543333.333355554443 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   3.5e-11   1.3e-07      12      69 ..     183     235 ..     171     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 3.5e-11
                 HHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  12 eeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ee + ++F ++G+i++i++ +     s+g++f++++++ +A+ A ea+ ++ l++ e+
  CCE28547.1 183 EEIVARHFAEWGQIERIRVLN-----SRGVGFITYTNEANAQFAREAMAHQSLDHDEI 235
                 5667789**************.....8***********************99988766 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     6e-07    0.0022      14      52 ..     183     221 ..     178     221 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 6e-07
  Nup35_RRM_2  14 ielVlehFasfGeIvkhyvpkevsvmyvkfesekdaekA 52 
                  +e+V++hFa+ G+I ++ v +++ v ++++ +e +a+ A
   CCE28547.1 183 EEIVARHFAEWGQIERIRVLNSRGVGFITYTNEANAQFA 221
                  58999****************************999865 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.6   4.4e-06     0.016       6      25 ..     112     130 ..     112     131 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.4e-06
                 BCHHHHHS--TTGGG-SSBS CS
     zf-CCCH   6 CrffmrtGyCkyGdrCkFaH 25 
                 C +f+r G+C+ G  C F H
  CCE28547.1 112 CLRFAR-GICPLGRDCTFLH 130
                 889***.************* PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2         2     7e+03       6      10 ..      89      93 ..      88      93 .. 0.76
   2 ?   10.6   0.3   0.00013      0.45       1      19 []     112     130 ..     112     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2
   zf_CCCH_4  6 qGtCk 10
                +G+C+
  CCE28547.1 89 KGRCN 93
                79**5 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00013
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 C  f++G C+ G  C+F+H
  CCE28547.1 112 CLRFARGICPLGRDCTFLH 130
                 6669*************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3011.98
//
Query:       CCE28548.1  [L=348]
Description: probable GTP-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-35  119.2   1.2    1.4e-34  118.3   0.4    1.8  2  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
    4.2e-21   74.8   0.3    9.2e-21   73.7   0.1    1.7  2  TGS           TGS domain
    1.3e-20   73.6   0.0    2.6e-20   72.6   0.0    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
    1.9e-12   47.0   0.0    3.1e-12   46.3   0.0    1.3  1  FeoB_N        Ferrous iron transport protein B
    0.00025   21.2   0.3      0.048   13.7   0.0    2.3  2  Dynamin_N     Dynamin family
  ------ inclusion threshold ------
      0.073   12.0   0.1       0.17   10.8   0.1    1.6  1  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
       0.15   11.1   0.0       0.33   10.0   0.0    1.5  2  MCM           MCM P-loop domain


Domain annotation for each model (and alignments):
>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.4   5.3e-38   1.4e-34       2     106 .]     164     270 ..     163     270 .. 0.97
   2 ?   -1.6   0.0         1   2.6e+03      35      51 ..     289     305 ..     287     315 .. 0.79

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 5.3e-38
  MMR_HSR1_Xtn   2 gGikitstvkltkldeetvkkilkeykihnaevlir.edvtvDdlidvieg.nrvYipclyvlNKiDlisleeldelarepnsvviSaekelnldeL 96 
                   gG+kit + + ++lde++  +il++yki n+evl+r e++tvDd+idvi++ +r+Yi+clyv+NKiD++sl+ ld+larep++vv+S+e +l+++++
    CCE28548.1 164 GGMKITFQAPPKHLDEKMLYNILRDYKILNCEVLVRdENATVDDFIDVIMKdHRKYIKCLYVYNKIDSVSLDFLDSLAREPQTVVMSCELDLGIQDV 260
                   9***********************************999**********6559******************************************** PP

  MMR_HSR1_Xtn  97 kekiweeLnL 106
                    +++w+eL+L
    CCE28548.1 261 IDRCWKELRL 270
                   ********87 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1
  MMR_HSR1_Xtn  35 liredvtvDdlidvieg 51 
                   ++r++ t++d+ d +  
    CCE28548.1 289 IVRSNSTIEDVCDRVHR 305
                   78999999999998754 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.9   7.4e+03      15      28 ..     201     214 ..     196     221 .. 0.73
   2 !   73.7   0.1   3.6e-24   9.2e-21       1      60 []     271     344 ..     271     344 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.9
                 TTB-HHHHHHHHST CS
         TGS  15 rgatveDfAykIhr 28 
                 ++atv Df   I +
  CCE28548.1 201 ENATVDDFIDVIMK 214
                 78999998665555 PP

  == domain 2  score: 73.7 bits;  conditional E-value: 3.6e-24
                 EEEEE.TTSSEEE......EETTB-HHHHHHHHSTTHHHHEEEEEECS.......EEEETTSBB-SSEEEEEEE CS
         TGS   1 irvyt.PdGkvpd......lprgatveDfAykIhrslakkfiyAlVnG.......qrvgldhvLedgdvveIvt 60 
                 +r+yt ++G +pd      +++++t+eD++ ++hr+l+++f+yAlV+G       qrvgl hv+ d+dvv Ivt
  CCE28548.1 271 MRIYTkRKGVEPDfgealiVRSNSTIEDVCDRVHRTLKDTFKYALVWGasarhipQRVGLAHVVSDEDVVYIVT 344
                 79**********************************************************************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0     1e-23   2.6e-20       1      95 [.      43     136 ..      43     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 1e-23
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT..TTCSHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdas..eeklkplde 95 
                 ++ +vG p vGKSt++++ t+++++v+++++tT++ + g ++++g ei+l+D+pG+iegase+kg g+++ +  + +dlil+v+da+       +++ 
  CCE28548.1  43 RISLVGFPSVGKSTFLSKVTKTRSEVASYAFTTLTAIPGVLEYGGAEIQLLDLPGIIEGASEGKGRGRQVISAAKtSDLILMVLDATkrA----EQRA 136
                 689*************************************************************9999999988868********88331....2222 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   1.2e-15   3.1e-12       2      92 ..      43     132 ..      42     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 1.2e-15
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH.CTSSSEEEEEEEGGGHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardfll.eeepdvvvnvvdatnle 92 
                 ++ lvG p vGk+t++ ++t+++++v+ ++ +t     g l++ g e++++DlPGi  ++  se +   r+++   ++ d+++ v+dat+  
  CCE28548.1  43 RISLVGFPSVGKSTFLSKVTKTRSEVASYAFTTLTAIPGVLEYGGAEIQLLDLPGI--IEGASEGKGRGRQVISaAKTSDLILMVLDATKRA 132
                 689****************************************************9..7899999999****9845678*********9743 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.4    0.0077        20       1      29 [.      44      72 ..      44      87 .. 0.73
   2 !   13.7   0.0   1.9e-05     0.048     102     145 ..      89     135 ..      81     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0077
                EEEEEBTTTTHHHHHHHHHTS--S---SS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpn 29
                i +vG  S GKS++l ++++ +  + +  
  CCE28548.1 44 ISLVGFPSVGKSTFLSKVTKTRSEVASYA 72
                679999*********99987765554444 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.9e-05
                 SEEEEE---B-SSSGTTS...HHHHHHHSTTEEEEEEEETTS-CCC- CS
   Dynamin_N 102 gltlvDlPGldsvnkrdq...elvkeyikkadiilavtsanhdlsns 145
                 ++ l+DlPG+++ + + +   + v +++k +d+il+v++a + + + 
  CCE28548.1  89 EIQLLDLPGIIEGASEGKgrgRQVISAAKTSDLILMVLDATKRAEQR 135
                 789*********999999999999999*************9987765 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   6.8e-05      0.17      26      52 ..      39      64 ..      36      88 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.8e-05
                -S-SEEEEEEE-TTSSHHHHHHHHHHH CS
        MeaB 26 aGraqvvGltGvPGaGkstlvealgle 52
                +G a ++ l G+P +Gkst++++++ +
  CCE28548.1 39 SGDA-RISLVGFPSVGKSTFLSKVTKT 64
                5555.899***************9865 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00013      0.33      54      83 ..      38      67 ..      27      82 .. 0.78
   2 ?   -3.4   0.0       1.6   4.2e+03     199     216 ..     120     137 ..     118     140 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00013
                BCSS-EEEEEESSTSTHHHHHHHHHHHSSS CS
         MCM 54 lrgdinvllvgdpgtaKsqlLkyveklapr 83
                  gd  + lvg p+++Ks++L +v+k+ ++
  CCE28548.1 38 KSGDARISLVGFPSVGKSTFLSKVTKTRSE 67
                57999*****************99876543 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.6
                 SEEEEE-SSTTHHHHHHH CS
         MCM 199 DlifvllDkvdeekDeel 216
                 Dli+++lD +++ + ++l
  CCE28548.1 120 DLILMVLDATKRAEQRAL 137
                 899999999888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2738.19
//
Query:       CCE28549.1  [L=452]
Description: related to acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-25   90.3   0.1    2.4e-25   89.5   0.1    1.4  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    2.9e-21   75.5   0.0    5.3e-21   74.6   0.0    1.5  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    7.9e-14   52.3   0.1    1.8e-13   51.1   0.1    1.7  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    2.6e-09   37.4   0.8    3.9e-09   36.9   0.0    1.7  2  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.1   5.3e-29   2.4e-25       1     148 [.     258     409 ..     258     410 .. 0.97

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 5.3e-29
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTS..B-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------..HHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrr..kafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd..raeasmaK 92 
                    g+Gf++++ +l  +R+ +a++++g+a+ al+ +l +++++  k fgk l +h ++ e +a+ + e+++arl v++aa+++d  +p+   +e++ aK
     CCE28549.1 258 GRGFEIIQGRLGPGRIHHAMRSIGAAEVALDWMLVRVNDErkKPFGKLLREHGVILEWIAKSRLEIDSARLVVLNAAHKMDLLGPKkaLKEIAQAK 353
                    79***********************************9875678******************************************9999****** PP

                    HHHHHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHH CS
  Acyl-CoA_dh_1  93 lfaselaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarr 148
                    ++ +++a +v+d+a+q +GgaG+ +++p++  +  +r+lr+++G++e+++++++r+
     CCE28549.1 354 VLIPQTALTVIDRAIQSYGGAGVCQDTPLASSWAGIRTLRLADGPDEVHLQQMGRN 409
                    ****************************************************9986 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.0   1.2e-24   5.3e-21       1      97 []     144     246 ..     144     246 .. 0.91

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 1.2e-24
                    EEE---SS-.SS-GGG---EEEEETT.EEEEEEEEEEEETTTT..-SEEEEEEETS---..----EEEEEEE..GGGEEE-----BSS-TTS-..E CS
  Acyl-CoA_dh_M   1 afalTEpqa.GsdvasvkttaaerdggeyvlnGeKiwitnaai..atlalvlartekpd..rarglslflvprdapgvsvrrieeklGlrglp..t 89 
                    af +TEpq+  sd+++++   ++r+g+eyvlnG+K+w+++a++  +++++v+++t+k++   +r+ s++lvp+dapg++++r+ + +G++++p  +
     CCE28549.1 144 AFLMTEPQVaSSDATNIEL-DIRREGNEYVLNGQKWWSSGAGDprCKVYIVMGKTDKENrdPYRQQSVVLVPADAPGIRIERMLKVYGYDDAPhgH 238
                    799*****989*******8.79999999***************99*********555555699******************************667 PP

                    EEEEEE.. CS
  Acyl-CoA_dh_M  90 gelvfedv 97 
                    g+l+f+dv
     CCE28549.1 239 GHLTFTDV 246
                    78888876 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.1   4.1e-17   1.8e-13       1     112 [.      14     139 ..      14     140 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 4.1e-17
                    THHHHHHHHHHHHHHHHHTHHH.......HHHHH.HHTSGH...HHHHHHHHHTTCTSTTS-.GGGTS-.-S-HHHHHHHHHHHHHH-HHHHH.HH CS
  Acyl-CoA_dh_N   1 teeqealrdtvrefaeeelaph.......aaewd.eegefp...relwkklaelGllgitvp.eeygGa.gldyleaaivaeelaradaglal.ll 82 
                    ++e + + d v++f+eee+ p        + e d + + +p   +el  k+ +lGl+++ +p   y  + g+++le+ ++ae l+r  ++ ++   
     CCE28549.1  14 SDEAKRMIDVVAKFVEEECIPAdpvleaqIGEGDsRWESHPpilEELKTKAQKLGLWNMFLPrGHYKESpGWTNLEYGLMAEWLGRSRSASEAcNC 109
                    589999*************9943333322222233333233355999***************65666654899*************9999998788 PP

                    HHHHHTTHHHHHHHS-HHHHHHHHHHHHTT CS
  Acyl-CoA_dh_N  83 gvhsslvapailrfGteeqkrryLpklasg 112
                    ++ ++ ++++++++G+e qk+++L++l++g
     CCE28549.1 110 AAPDTGNMEVLAKYGNECQKQQWLKPLMEG 139
                    9999999*********************99 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   8.7e-13   3.9e-09       3     120 ..     275     386 ..     273     394 .. 0.89
   2 ?   -3.2   0.1       2.1   9.5e+03      96     106 ..     426     436 ..     402     450 .. 0.49

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 8.7e-13
                    HHHHHHHHHHHHHHHHHHHHH.HHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   3 iaavalGaAraalaefvelar.ervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaa 97 
                    +a+  +GaA+ al+ ++ +++ er++  +g+ l+++ ++   +a+++ ++d+Ar+++++aa + ++l   +k+      +e++ a++l  ++a  +
     CCE28549.1 275 HAMRSIGAAEVALDWMLVRVNdERKK-PFGKLLREHGVILEWIAKSRLEIDSARLVVLNAAHK-MDLLGPKKA-----LKEIAQAKVLIPQTALTV 363
                    78999************999966666.9***********************************.555554454.....69**************** PP

                    HHHHHHHCGGGGGBTT-HHHHHH CS
  Acyl-CoA_dh_2  98 vdalfeaaGgsalrkesplqRlw 120
                    +d+++++ Gg ++ ++ pl   w
     CCE28549.1 364 IDRAIQSYGGAGVCQDTPLASSW 386
                    ******************96655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.1
                    HHHHHHHHHCG CS
  Acyl-CoA_dh_2  96 aavdalfeaaG 106
                    + + +l++  G
     CCE28549.1 426 DKTAELMRRYG 436
                    22233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3638.41
//
Query:       CCE28550.1  [L=184]
Description: probable GTPase Rab7 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-55  187.5   0.0    1.5e-55  187.3   0.0    1.0  1  Ras           Ras family
    2.4e-32  111.7   0.0    3.4e-32  111.2   0.0    1.2  1  Roc           Ras of Complex, Roc, domain of DAPkinase
    2.2e-13   50.0   0.0    2.5e-13   49.9   0.0    1.0  1  Arf           ADP-ribosylation factor family
    2.4e-08   34.0   0.0    3.7e-08   33.4   0.0    1.3  1  MMR_HSR1      50S ribosome-binding GTPase
    5.6e-07   29.2   0.0    6.8e-07   28.9   0.0    1.2  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
    8.6e-06   25.4   0.0    0.00048   19.7   0.0    2.2  2  GTP_EFTU      Elongation factor Tu GTP binding domain
     0.0002   21.3   0.2     0.0032   17.4   0.1    2.5  3  RsgA_GTPase   RsgA GTPase
     0.0017   17.9   0.0     0.0023   17.4   0.0    1.2  1  SRPRB         Signal recognition particle receptor beta subun
     0.0026   17.6   0.2      0.096   12.4   0.0    2.2  2  ATP_bind_1    Conserved hypothetical ATP binding protein
     0.0035   17.4   0.0     0.0065   16.5   0.0    1.6  1  AAA_5         AAA domain (dynein-related subfamily)
     0.0038   17.6   0.0     0.0055   17.1   0.0    1.3  1  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.011   15.5   0.1       0.14   11.9   0.0    2.1  2  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
      0.012   15.2   0.0      0.028   14.0   0.0    1.5  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.013   15.8   0.0      0.025   14.8   0.0    1.4  1  AAA_22        AAA domain
      0.015   15.0   0.0      0.028   14.1   0.0    1.5  1  AAA_24        AAA domain
      0.019   14.3   0.0      0.035   13.4   0.0    1.5  1  Septin        Septin
      0.022   14.3   0.0      0.027   14.0   0.0    1.3  1  AAA_7         P-loop containing dynein motor region
      0.068   12.6   0.0       0.11   11.9   0.0    1.4  1  TniB          Bacterial TniB protein
       0.09   11.9   0.0       0.13   11.3   0.0    1.2  1  MCM           MCM P-loop domain
      0.099   12.5   0.0       0.13   12.1   0.0    1.2  1  NTPase_1      NTPase
        0.1   12.5   0.0       0.15   12.0   0.0    1.2  1  NACHT         NACHT domain
       0.11   12.9   0.0       0.38   11.2   0.0    1.9  2  RNA_helicase  RNA helicase
       0.13   12.1   0.0       0.21   11.5   0.0    1.3  1  ATPase_2      ATPase domain predominantly from Archaea
       0.15   11.6   0.0        1.2    8.7   0.0    2.1  2  FeoB_N        Ferrous iron transport protein B
        0.2   10.8   0.1       0.27   10.4   0.1    1.2  1  DAP3          Mitochondrial ribosomal death-associated protei


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.3   0.0     2e-58   1.5e-55       1     155 [.      10     170 ..      10     176 .. 0.97

  Alignments for each domain:
  == domain 1  score: 187.3 bits;  conditional E-value: 2e-58
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 K++++Gds+vGKtsl++++vk+kF+ +y++Tig+df+t+e++vd+++v++++wDTAGqe+f+sl  ++yr+a++++lvyd+++++sfe +++w +e+  
  CCE28550.1  10 KVIILGDSGVGKTSLMNQYVKKKFSASYKATIGADFLTREVMVDDRQVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNAKSFEALESWRDEFLI 108
                 99***********************************************************************************************99 PP

                 HST....TTSEEEEEEETTTGGG.G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHH CS
         Ras 100 vae....envpivLvGnKvDlee.kravsteegeelakelg.lkfletSAktnenveeafee 155
                 +a+     n+p+v++GnK+D+ee kr++s++++ ++++++g ++++etSAk++ n+++afe 
  CCE28550.1 109 QASprdpPNFPFVVLGNKIDVEEsKRVISNKRAMTFCQSKGdIPYFETSAKEAINIDQAFEG 170
                 999999989************9878999********************************85 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.0   4.7e-35   3.4e-32       1     119 [.      10     128 ..      10     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 111.2 bits;  conditional E-value: 4.7e-35
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 Kv+++GdsgvGKtsl++++v++kfs ++k+tig+dflt+ev+ ++     +  ++v++++WDtaGqerf+sl   ++r+a++++lvyd   ++s+e l+
  CCE28550.1  10 KVIILGDSGVGKTSLMNQYVKKKFSASYKATIGADFLTREVM-VD-----D--RQVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDvnnAKSFEALE 100
                 9*************************************9984.22.....2..5799*******************************766667899** PP

                 HHHHHHHHHCS.....SS-EEEEEE-TT CS
         Roc  97 eWlkelkkvag.....kspvilvgnkiD 119
                 +W +e+  +a+     + p++++gnkiD
  CCE28550.1 101 SWRDEFLIQASprdppNFPFVVLGNKID 128
                 ***9986655422222447999*****9 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   3.5e-16   2.5e-13      14     167 ..       8     167 ..       1     174 [. 0.78

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 3.5e-16
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHH CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkal 107
                  l++++lG  + GKt +++++ +++++   + Tig  f ++e+++  +++++++wD  Gqe+  +l   +++  d  + v D+++ + +e  ++  +++
  CCE28550.1   8 LLKVIILGDSGVGKTSLMNQYVKKKFSAsYKATIGadFLTREVMVddRQVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNAKSFEALESWRDEF 106
                 479******************9999876478999933456777776689*************************************9999988888887 PP

                 CTSGCCT...TSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHH CS
         Arf 108 leeeelk...evallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeg 167
                 l +   +   + +++vl+NK+D++e+      ++++  +  ++k ++  +++sa +  +++++
  CCE28550.1 107 LIQASPRdppNFPFVVLGNKIDVEESKRVISNKRAM--TFCQSKGDIPYFETSAKEAINIDQA 167
                 777666656689***********9987655444444..4444445555666666666666655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   5.2e-11   3.7e-08       1     102 [.      10     104 ..      10     126 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 5.2e-11
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeel 97 
                 +v+i+G + vGK++L+n+ +++k  +s k+    d  +++v +++    ++l+Dt+G  e   + ++lg af +   ad  +lv d++ +  k   e l
  CCE28550.1  10 KVIILGDSGVGKTSLMNQYVKKKFSASYKATIGADFLTREVMVDDrqVTMQLWDTAG-QE---RFQSLGVAFYR--GADCCVLVYDVN-N-AKSF-EAL 99 
                 699*******************99888888888888777777666235689******.54...44489999995..578888888866.3.2333.555 PP

                 HHHHH CS
    MMR_HSR1  98 eelle 102
                 e++++
  CCE28550.1 100 ESWRD 104
                 66544 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   9.5e-10   6.8e-07       1     130 [.      10     135 ..      10     172 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 9.5e-10
   Gtr1_RagA   1 kvLLmGksgsGKts.mrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 kv+++G sg GKts m++ + ++++a    ++ga   +++  v   +++t++lwD  Gqe+f+   +   +     ++ vl+   Dv++ +  e+le++
  CCE28550.1  10 KVIILGDSGVGKTSlMNQYVKKKFSASYKATIGADFLTREVMV-DDRQVTMQLWDTAGQERFQSLGVAFYR---GADCCVLV--YDVNNAKSFEALESW 102
                 89***********967899**************9998888888.5899**************988644433...34555555..599988888899988 PP

   Gtr1_RagA  99 ke..ilealrqyspeakvfvlihKmDliqedere 130
                 ++  +++a  +  p+  + vl +K+D  + ++r 
  CCE28550.1 103 RDefLIQASPRDPPNFPFVVLGNKIDVEE-SKRV 135
                 7633567777788999**********863.3333 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.029        21       4      31 ..       9      36 ..       6      60 .. 0.69
   2 !   19.7   0.0   6.7e-07   0.00048      66     186 ..      53     169 ..      35     177 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.029
                EEEEEEESTTSSHHHHHHHHHHHTTSSC CS
    GTP_EFTU  4 rnigiighvDhGKtTLtdrLlyktgais 31
                ++++i+g+   GKt+L+ + ++k+   s
  CCE28550.1  9 LKVIILGDSGVGKTSLMNQYVKKKFSAS 36
                6899*************99886654444 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 6.7e-07
                 TCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTE...EEEEEESCGSTHHHHHHHHHHHHHHHHHHHHH CS
    GTP_EFTU  66 etkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvp...iivfiNKmDrlkaelkeiveevkqklsrkeek 156
                 + ++ +++l Dt G + F++   + +r +D++vlv d+++       e+   e l +a+ ++ p   ++v+ NK+D  +++   i ++   ++      
  CCE28550.1  53 DDRQVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNAksfeaLESWRDEFLIQASPRDPPnfpFVVLGNKIDVEESKRV-ISNKRAMTF------ 144
                 467788999******************************654444488888888899999877777699999****7533322.222222234...... PP

                 HHHHHHTTTTTEEEEEEBTTTTBTHHHHHH CS
    GTP_EFTU 157 lekygekgekevpvvfgSalkgegvktlle 186
                     + kg  ++p + +Sa+++ ++++ +e
  CCE28550.1 145 ---CQSKG--DIPYFETSAKEAINIDQAFE 169
                 ...33344..58888888888888776665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   4.5e-06    0.0032     102     122 ..      11      31 ..       4      73 .. 0.83
   2 ?   -0.7   0.0       1.6   1.2e+03      70      96 ..      76     102 ..      54     111 .. 0.78
   3 ?    1.3   0.0      0.41   2.9e+02      48      91 ..     119     165 ..      81     178 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.5e-06
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  ++++G SGvGK++L+n+ + +
   CCE28550.1  11 VIILGDSGVGKTSLMNQYVKK 31 
                  6899************99876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.6
                  HHHHHTTSEEEE--TTTHTTHHHHHHH CS
  RsgA_GTPase  70 eelealgyevllvsaktkegleelkel 96 
                  + ++ +++ vl+ ++++ +++e+l+++
   CCE28550.1  76 AFYRGADCCVLVYDVNNAKSFEALESW 102
                  568889999999999999999999887 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.41
                  EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSEEEE--TTTHTTHH CS
  RsgA_GTPase  48 epvivlnKiDlleeee...eleelkeelealgyevllvsaktkegle 91 
                  + v++ nKiD+ e+++   + +++    ++ +++ + +sak+  +++
   CCE28550.1 119 PFVVLGNKIDVEESKRvisNKRAMTFCQSKGDIPYFETSAKEAINID 165
                  45666699999888886533333333334445666777766555544 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.3e-06    0.0023       5      63 ..      10      71 ..       6     102 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.3e-06
                EEEEE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG....GGTT-SEEEETT-GCCS CS
       SRPRB  5 avllvGlsdsGKTslftrLttdsvkktvtSq..essaalkv.ksekgskltliDfPGheklr 63
                +v+++G s  GKTsl+++  ++++  ++ +   +  ++ +v  ++++ +++l D  G+e+++
  CCE28550.1 10 KVIILGDSGVGKTSLMNQYVKKKFSASYKATigADFLTREVmVDDRQVTMQLWDTAGQERFQ 71
                69********************99999877655555566665788899999*******9986 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.076        54       1      17 [.      13      29 ..      13      41 .. 0.83
   2 !   12.4   0.0   0.00013     0.096      75     186 ..      46     151 ..      32     175 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.076
  ATP_bind_1  1 vvGpaGsGKttfvgals 17
                ++G  G+GKt+++++ +
  CCE28550.1 13 ILGDSGVGKTSLMNQYV 29
                6899********99865 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00013
  ATP_bind_1  75 lresldwldeelekeeddyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltd...ptkfisgllsalsamlrlelPhvvvlnkfDllk 170
                 l+ ++  +d    +++    l Dt GQ ++  +  +          ++a ++v + D++ +++     ++ ++ l+  s     + P+vv  nk+D+ +
  CCE28550.1  46 LTREV-MVD----DRQVTMQLWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNNAKSfeaLESWRDEFLIQASPRDPPNFPFVVLGNKIDVEE 131
                 44443.221....11237899********999988888........9**************9988788999999***********************88 PP

  ATP_bind_1 171 ek....lekeleffedveal 186
                 +k    +++++ f +   ++
  CCE28550.1 132 SKrvisNKRAMTFCQSKGDI 151
                 66666555555555544444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   9.1e-06    0.0065       2      49 ..      11      65 ..      10     137 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.1e-06
                EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--........ CS
       AAA_5  2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik......n 49
                v+++G++G+gK++l+ ++ +    +++    + +++t+e ++  r+++       
  CCE28550.1 11 VIILGDSGVGKTSLMNQYVKKKfSASYKATIGADFLTREVMVDDRQVTmqlwdtA 65
                89***********9988766555******************99999976555543 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   7.7e-06    0.0055      27     102 ..      11     107 ..       2     146 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.7e-06
      AAA_16  27 vllsGesGvGKsslv.rellralekd.................ggiflrgkcdqlesa..............ipysa.laqalareellrqlldeaesa 92 
                 v++ G+sGvGK+sl+ + +++ ++++                 +            ++               ++ + + + ++   l+ +++++++  
  CCE28550.1  11 VIILGDSGVGKTSLMnQYVKKKFSASykatigadfltrevmvdD------------RQvtmqlwdtagqerfQSLGVaFYRGADCCVLVYDVNNAKSFE 97 
                 89*************44455566665555564444443333331............1111111111111122333222555555556666666667777 PP

      AAA_16  93 eleawrekle 102
                 +le wr++++
  CCE28550.1  98 ALESWRDEFL 107
                 7777777665 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00019      0.14       3      35 ..      10      44 ..       8      54 .. 0.74
   2 ?    1.2   0.0      0.38   2.7e+02      97     137 ..     125     167 ..     116     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
   PduV-EutP  3 killiGkvgsGKttLtqalkgeel..kYkktqaie 35
                k++++G +g+GKt+L+++  ++++  +Yk t   +
  CCE28550.1 10 KVIILGDSGVGKTSLMNQYVKKKFsaSYKATIGAD 44
                89*************97765554312688776555 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.38
   PduV-EutP  97 tkidlaedeenieave..elLksaGaekifevsavekegieel 137
                  kid+ e++  i++ +  ++ +s G    fe+sa e ++i++ 
  CCE28550.1 125 NKIDVEESKRVISNKRamTFCQSKGDIPYFETSAKEAINIDQA 167
                 5889887766665544114557778778899999999999875 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.9e-05     0.028       3      70 ..      11      91 ..       9     112 .. 0.70
   2 ?   -2.5   0.0       4.6   3.3e+03     145     157 ..     122     134 ..     118     150 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.9e-05
                EEEEESTTCCHHHHHHHHH.CT--SS-EEEEESS-SS..CHCCCCCC.........HCCCT......EEEETTTTECCHCTT-HH CS
        cobW  3 tvltGflGsGKTtLlnhll.enraglklavivNefge..vsiDaell.........retgve.....ivelenGciCctlredll 70
                +++ G  G GKT+L+n+++ ++ +    a i  +f +  v +D + +         +    e      v +  G  Cc l  d+ 
  CCE28550.1 11 VIILGDSGVGKTSLMNQYVkKKFSASYKATIGADFLTreVMVDDRQVtmqlwdtagQ----ErfqslGVAFYRGADCCVLVYDVN 91
                6889999************54445555688999996433889999995555543321....255555889999999999776654 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.6
                 EEEE-HHHHCHC. CS
        cobW 145 lvlnKtDlldeea 157
                 ++ nK+D+ ++++
  CCE28550.1 122 VLGNKIDVEESKR 134
                 5667887665553 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.5e-05     0.025       9      38 ..      12      52 ..       9      73 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.5e-05
      AAA_22  9 vvtGesGtGKTtllrrlleqldeeakaee...........e 38
                ++ G sG+GKT l++++++++  +++ ++            
  CCE28550.1 12 IILGDSGVGKTSLMNQYVKKKFSASYKATigadfltrevmV 52
                799**************998755544444565555555554 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.9e-05     0.028       4      23 ..      10      30 ..       8      60 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.9e-05
      AAA_24  4 kiliyGpsgiGKTtlakel.g 23
                k++i G+sg+GKT+l++++ +
  CCE28550.1 10 KVIILGDSGVGKTSLMNQYvK 30
                89***************9943 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.9e-05     0.035       4      37 ..       8      41 ..       5      67 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-05
                EEEEEEEEBTTSSCCCCCCTTSSSS--------- CS
      Septin  4 eftlmvvGesglGkttlintlfetdlieeeklee 37
                 + +++ G+sg+Gkt+l+n  ++++   + k + 
  CCE28550.1  8 LLKVIILGDSGVGKTSLMNQYVKKKFSASYKATI 41
                5789****************99998877754443 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.8e-05     0.027      35      63 ..      10      38 ..       3      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.8e-05
       AAA_7 35 pvllvGptGtGKtviikdllkkldkekyl 63
                +v++ G++G+GKt+++++++kk  + +y+
  CCE28550.1 10 KVIILGDSGVGKTSLMNQYVKKKFSASYK 38
                6899**************77765545554 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00015      0.11      36      61 ..       9      34 ..       2      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
        TniB 36 pnlllvGdsnnGKtmivekFarlhpp 61
                 +++++Gds +GKt++++++ +++ +
  CCE28550.1  9 LKVIILGDSGVGKTSLMNQYVKKKFS 34
                5689****************998854 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00018      0.13      58     104 ..       9      53 ..       2      67 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
                 -EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSEEEEE CS
         MCM  58 invllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaavvrd 104
                  +v+++gd+g++K+ l+++  k    a y    g  a  Lt  v+ d
  CCE28550.1   9 LKVIILGDSGVGKTSLMNQYVKKKFSASYKATIG--ADFLTREVMVD 53 
                 579**************88776655555544333..23356555555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00019      0.13       1      57 [.      10      69 ..      10     103 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00019
                EEEEE--TTSSHHHHHHHHHHHH...GGGE.EE..EEEEEE-------EEEEEET.T--E CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlellkssgvkv.gG..fyteevreggrrigFkivdlasgee 57
                kv+i G +GvGKt l+++ +++  s  +k   G  f+t+ev  ++r++  ++ d a +e+
  CCE28550.1 10 KVIILGDSGVGKTSLMNQYVKKKFSASYKAtIGadFLTREVMVDDRQVTMQLWDTAGQER 69
                58999***********99877766665554234459************999999955444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00021      0.15       3      20 ..      11      28 ..       9      39 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00021
                EEEEC-TTTCHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkl 20
                vi+ G++G+GKT L+ + 
  CCE28550.1 11 VIILGDSGVGKTSLMNQY 28
                89************9875 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00053      0.38       1      24 [.      11      35 ..      11      70 .. 0.72
   2 ?   -1.3   0.0       3.9   2.8e+03      52     102 ..      84     136 ..      76     140 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00053
  RNA_helicase  1 iwlyGpsgeGKStlake.Lakallk 24
                  +++ G+sg+GK++l+++ + k+++ 
    CCE28550.1 11 VIILGDSGVGKTSLMNQyVKKKFSA 35
                  6799************923333333 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.9
  RNA_helicase  52 vvvidDfgqvkdee.nps.dlaelirlvsstpyplnmasleekgtlftSkvvi 102
                   +v++ D+++ k+ e  +s   ++li++    p + +   l +k  + +Sk vi
    CCE28550.1  84 CVLVYDVNNAKSFEaLESwRDEFLIQASPRDPPNFPFVVLGNKIDVEESKRVI 136
                   45677777777776666666666777777777777766666666666666665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0003      0.21      23      49 ..      11      37 ..       3      57 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0003
    ATPase_2 23 yfiYGpegsGKtaLlkeiienledkdk 49
                + i G  g+GKt+L+++ ++++ + ++
  CCE28550.1 11 VIILGDSGVGKTSLMNQYVKKKFSASY 37
                5799***************99855554 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0017       1.2       2      25 ..      10      33 ..       9      72 .. 0.79
   2 ?    0.7   0.0      0.48   3.5e+02     107     151 ..     119     166 ..     116     170 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0017
                EEEEEESTTSSHHHHHHHHHTTSE CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgakq 25
                +v+++G+  vGkt+l+n+  ++k 
  CCE28550.1 10 KVIILGDSGVGKTSLMNQYVKKKF 33
                6899*************9988765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.48
                 SEEEEEETHHHHHHTTEEE-HHHH...HHHHTS-EEEEBTTTTBTHHH CS
      FeoB_N 107 pvvlalnmideaekkgieidlkkL...sekLgvpvvktsakkkegiee 151
                 p+v+  n+id+ e+k++  +++++   ++k ++p  +tsak+  +i++
  CCE28550.1 119 PFVVLGNKIDVEESKRVISNKRAMtfcQSKGDIPYFETSAKEAINIDQ 166
                 778888999999999988888887333567789999999999888876 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00038      0.27      19      45 ..       4      30 ..       1      37 [. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00038
                SSS---EEEEE-SSSSSTTTTHHHHHH CS
        DAP3 19 kkkkvkrlvltGekgsGKSvlLlqala 45
                +kk   ++++ G+ g+GK+ l++q + 
  CCE28550.1  4 RKKVLLKVIILGDSGVGKTSLMNQYVK 30
                567788******************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 1398.77
//
Query:       CCE28551.1  [L=152]
Description: uncharacterized protein CPUR_02238 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1158.17
//
Query:       CCE28552.1  [L=405]
Description: uncharacterized protein CPUR_02239 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   28.0   0.3    3.1e-06   26.9   0.3    1.6  1  AAA_lid_2  AAA lid domain
  ------ inclusion threshold ------
      0.097   13.0   3.0       0.14   12.5   3.0    1.2  1  Vfa1       AAA-ATPase Vps4-associated protein 1


Domain annotation for each model (and alignments):
>> AAA_lid_2  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.3   3.5e-10   3.1e-06       3      63 ..     310     370 ..     308     377 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.5e-10
   AAA_lid_2   3 trahlaielgvsgrRadlallraArAlAalegrdyVtpeDvkeaaplVLaHRlr.repeaeg 63 
                  r h+a++ g+s+  a++++ +  r lA ++  dyVtp     aa+  + HR+r  e+e e+
  CCE28552.1 310 LRMHRALQDGISPI-ATIHFEKLMRCLATIHDLDYVTPALAALAAKRTYLHRMRiTEAENER 370
                 6899**********.***************************************87777664 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.0   1.6e-05      0.14      43     115 ..     180     267 ..     176     317 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.6e-05
        Vfa1  43 HLkD..kqFatpivdeeeeeaakkkkeleeeiekvkkeyeekqkkkkekekkk.............kekd........kkdkdkkkekekdkkkek 115
                 H +D   ++++   de ++++ +++++ +e+ e+v++e++++ ++++++++++                +                ++++d+++e+
  CCE28552.1 180 HWHDpeDGYVNIEADEIYQDKIRERQRRQERHEQVEQEWRQQWEQQQNQNQNQaeawtsagqdierG--EgtsagdsvV------RDEDEDEDTES 267
                 5555435667766777777766666666666666666655554444444443333337666544330..1332222111......11111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1946  (0.108539); expected 358.6 (0.02)
Passed bias filter:                      881  (0.0491383); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 2794.82
//
Query:       CCE28553.1  [L=517]
Description: probable guanosine-diphosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.7e-103  344.8   0.0   7.7e-103  344.4   0.0    1.0  1  GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family


Domain annotation for each model (and alignments):
>> GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.4   0.0  4.3e-107  7.7e-103       8     414 ..      80     506 ..      74     515 .. 0.86

  Alignments for each domain:
  == domain 1  score: 344.4 bits;  conditional E-value: 4.3e-107
   GDA1_CD39   8 ekygiviDAGSsgsrlhvykwkdekesllqivkliee.....vkklePGlSsfekkpeeaaeylkpllelaeeviPeekrsetpvlikATAGlRLlkee 101
                 ++y+++iDAGS+gsr+hvyk+++      ++v+++e+     +kk   GlS+++++p +aa+ l+pl+ +a++++Pe+ + ++pv++kATAGlR +  e
  CCE28553.1  80 VQYVLMIDAGSTGSRIHVYKFNN-----CGPVPELEKeefemTKKEVGGLSKYADDPIAAAKTLDPLMAVAMQHVPEKLKGCSPVAVKATAGLRKVGPE 173
                 68*******************33.....333333333334447777899************************************************** PP

   GDA1_CD39 102 kkekilkalrnklkklsefkved...qgiriidGeeEGiYgWiaiNYllGkfnkeapevskqetvgvlDlGGaStQiafepq....eeseiaekvedie 193
                 k+e+ilk++r++l+++++f+v      g+ ++dG+ EG+Y+Wi++NYllGk++      +k+et++v+DlGG+StQi+f+p+    +++ + ek  ++ 
  CCE28553.1 174 KSEAILKQVRQHLENDYPFPVVSnekGGVAVMDGADEGVYAWITTNYLLGKIGGP----DKSETAAVFDLGGGSTQIVFQPTfkaaKDGGMPEKLAEG- 267
                 ********************98755578*************************99....599*******************97444455556677777. PP

   GDA1_CD39 194 elklqekledkkyklyvtsfLgyGanealrkklaklikkasee..........vlkdpClprglektvevkdle.......fkqfaikgtgnyeqCrks 275
                 ++ + +++ ++k++ly++s+LgyG+ ea+++    l++   +            +  pCl +g ++ +ev+ ++       f+  a +  +   qCr++
  CCE28553.1 268 DHRFALDFGGQKFELYQHSHLGYGLMEARNAIHRLLVNDMAKSkssdkswetkAIVHPCLTPGRNREIEVEFTKdnkktynFTGPAEPSASHASQCRSL 366
                 7*****************************99999999887777889******9*************999877777784444444455667789***** PP

   GDA1_CD39 276 ikellnknakCkaeeClfngvfapsidllqklfgaseyfYtvsdvlklggek.....vklekltealrkfCk.knweeikaeskkskeksiseeeaCfk 368
                  +++l+k++ Ck  +C+fngv++ps   l k+f   e+ Y++s++++++++      ++  +l + ++++Ck +    +++++++ +e+    e++C++
  CCE28553.1 367 AERILEKDKDCKLAPCSFNGVHQPS---LAKTFA-KEDVYIFSYFYDRTHPLgmpdsFTIRELHDLAQTVCKgEPGWGTFDSVPGALEELKGREQYCLD 461
                 *************************...555553.35555555555555555555556**************7555678999***************** PP

   GDA1_CD39 369 gayvlslLhdGfdldktveelqsvekiaekelgWtLGamlnllkal 414
                 +++++ lLh+G+d++ + +e+++ +ki+++elgW+LGa+l ll+a 
  CCE28553.1 462 LNFMTVLLHHGYDMPID-REVKIAKKIKGNELGWCLGASLPLLEAA 506
                 *****************.**********************998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3797.46
//
Query:       CCE28554.1  [L=102]
Description: uncharacterized protein CPUR_02241 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 787.33
//
Query:       CCE28555.1  [L=144]
Description: uncharacterized protein CPUR_02242 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1073.23
//
Query:       CCE28556.1  [L=484]
Description: uncharacterized protein CPUR_02243 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-13   51.3   0.0    4.6e-13   49.6   0.0    1.8  1  APH       Phosphotransferase enzyme family
     0.0014   17.6   0.0        0.7    8.7   0.0    2.3  2  DUF1679   Protein of unknown function (DUF1679)
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.24   11.3   0.0    1.4  1  DUF282    Caenorhabditis protein of unknown function, DUF282
       0.13   11.6   0.0       0.22   10.8   0.0    1.3  1  EcKinase  Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0     1e-16   4.6e-13       2     202 ..      59     341 ..      58     343 .. 0.71

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1e-16
                 EEEE--.SSCEEEEEEETT.--EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTE..EEEEEE----EE-SS...HHHHHHH CS
         APH   2 vrelsggasnrtylvttpa.gryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagdtddeeigl..lfalieyvpgrsllr...klsaaql 91 
                 ++ l++g +nr  l+  ++ +++v ++++p   +++ ++++eva +++ ++      Pev++++  +ee +   +f l+e ++g+ l++   ++  +++
  CCE28556.1  59 IKKLPDGKYNRALLLSMDNgKEVVAKIPNPNagQPHFTVASEVATMKFAREVLNtDLPEVYDWCSRAEETPVgaEFILMEKMEGEELEHvwpNMAIEDR 157
                 7899***************66******99999999*************99886699********99999999999999999999999999889999999 PP

                 HHHHHHHHHHHCCHHCH.-STTTB-......................................................SHHCHTCCHH........HH CS
         APH  92 pellealgeflaalhqvdpaalpla......................................................dflaqdlell........rq 128
                  e++ a+++++    +v+ ++ +                                                        +                  +
  CCE28556.1 158 LEVVKAIAAYQMSWASVSFEQYGSLylaedfgggnipalvytddqgrrvedsrfvvgpstgremvddgrdeidfdrgpwY--------SleeyhaaiGK 248
                 99999999999988888433333335555556666666666666666666666666666665555554433333222221........01212222222 PP

                 HHCHHHCCCGCCTCCHHHHHHHH.................................HHHHHHHH--SSS-EEEE-SS-SGGGEEEC...TTEEEEE--- CS
         APH 129 lesatarllaselldlleeleeq.................................vlaalaallpgelptvllHgDlhpgNllvd.pddgrvtGviDf 193
                 +                +++ +q                                 +l  l++  ++ ++  l+H Dlh +N+ vd  +++r++G+iD+
  CCE28556.1 249 R---------------EIACVQQiselppsdltlrgpgfyqptrkkkvtalecylkLLKYLLPVDRSLGSSHLWHDDLHMRNIFVDqGNPPRIVGLIDW 332
                 2...............222222244444444444477777777777888666544455555555555*******************999********** PP

                 TT-EEEECC CS
         APH 194 edaglgppl 202
                 +   l+p  
  CCE28556.1 333 QSIELSPLY 341
                 *98888765 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00016       0.7     117     198 ..     101     181 ..      97     198 .. 0.78
   2 !    6.4   0.0   0.00077       3.4     238     304 ..     278     338 ..     267     340 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00016
     DUF1679 117 velYkileklnheeilltkvyflkkfdeenklkg.yiimeyvedihtlsmyenikadelipvlkaiAtlqalslslseeekks 198
                 v++ k ++++   +  l++vy   +  ee+++ + +i me +e+ +  ++  n+ +++ + v+kaiA+ q    s+s e+  s
  CCE28556.1 101 VATMKFAREVL--NTDLPEVYDWCSRAEETPVGAeFILMEKMEGEELEHVWPNMAIEDRLEVVKAIAAYQMSWASVSFEQYGS 181
                 55555555554..334567777766666666654499*********************************9999999887655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00077
     DUF1679 238 eelvdiveeylkeililekaskvskvlGikkvlvhgDlwsaNiLfseeeegklklkkviDyQlvslg 304
                 +++v+++e y   ++ l+ +  v++ lG +  l h Dl   Ni+  + +     +  +iD+Q + l+
  CCE28556.1 278 KKKVTALECY---LKLLKYLLPVDRSLGSS-HLWHDDLHMRNIFVDQGNP--PRIVGLIDWQSIELS 338
                 6677777777...88889999999999975.599************9776..67889*****99875 PP

>> DUF282  Caenorhabditis protein of unknown function, DUF282
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.4e-05      0.24      17      33 ..     114     130 ..     113     134 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.4e-05
      DUF282  17 giPslsdwCataaevpv 33 
                 ++P  +dwC +a+e+pv
  CCE28556.1 114 DLPEVYDWCSRAEETPV 130
                 89**************9 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     5e-05      0.22     213     253 ..     302     340 ..     269     342 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5e-05
    EcKinase 213 efnvlnHGDlwvnNimfkydeegepedvilvDFQlsrygSp 253
                   + l H Dl+++Ni +     + p  v l+D+Q ++++++
  CCE28556.1 302 GSSHLWHDDLHMRNIFVDQ--GNPPRIVGLIDWQSIELSPL 340
                 556799**********955..4579999*******999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 3212.10
//
Query:       CCE28557.1  [L=184]
Description: uncharacterized protein CPUR_02244 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   18.5   0.0     0.0028   17.4   0.0    1.7  1  HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-07    0.0028      18      49 ..     137     168 ..     127     172 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.5e-07
   HTH_Tnp_4  18 lnltyqdLayrFgvsestvsrifhkwvdlLae 49 
                 ++ +++  ++ F vs+s++ rifh++++ + +
  CCE28557.1 137 TGSSQRNAGLFFRVSQSSARRIFHEVQHEMVK 168
                 5667788999****************988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1373.56
//
Query:       CCE28558.1  [L=618]
Description: related to carboxypeptidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-80  271.9   0.0      2e-80  271.3   0.0    1.3  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.3   0.0   1.1e-84     2e-80       4     415 ..      49     533 ..      45     537 .. 0.88

  Alignments for each domain:
  == domain 1  score: 271.3 bits;  conditional E-value: 1.1e-84
                    SST-SSEEEEEEE...........ECSTTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEE CS
  Peptidase_S10   4 eetvnfkqysGYl...........dveeeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanv 88 
                    e+t+ +k+y+G++             + +   ++F+wf+e++++p+++pl +WLnGGPG+sS+ Gll+E+GP+ ++kds ++  +np+sWn+  n+
     CCE28558.1  49 ETTPGVKSYAGHVrlppgflddvsGERRDYAVNTFFWFFEARHDPHNAPLAIWLNGGPGSSSMLGLLQENGPCFIDKDS-SSTIHNPWSWNNHVNM 143
                    45589999****9999999994432224456799******************************************886.999************* PP

                    EEE--STTSTT-EETTSSG..S--SH......................................HHHHHHHHHHHHHHHHHSTCGTTS..EEEEEE CS
  Peptidase_S10  89 lfldqPvGvGFSysntksd..vktdd......................................eevaedlyefLkkffekfpeyksr..dfyitG 142
                    l++d+P  vGFSy++ ++   ++t+                                       +++a++l++f + ff++fp+yk +   + +++
     CCE28558.1 144 LYIDEPNQVGFSYDEPTNVtiYSTNShmvnivptdfskhppqlnlttragtlssqklshttnstQQAAHALWHFAQTFFTEFPHYKPNddRISMWA 239
                    **************9999855555559*************************************9********************766226999** PP

                    ETTHHHHHHHHHHHHHTHCCH--S........STSEEEEEEEESE-SBHHHHHCCHHH....HHHHTTSSHHHHHHHHHHHHEETHHHHHHHHHHH CS
  Peptidase_S10 143 ESYaGhyvPalakeilkknkkekk........kkinLkGlligNglideaeqvnsyve....fayehgliseeeyeslkkacekkeeleqesekca 226
                    ESY+Ghy P +++ + ++n+k  +        + + L  l i Ng++d+++q ++ +     ++y+ ++i+++ +++l +  + k  ++++  +c+
     CCE28558.1 240 ESYGGHYGPGFMRFFQQQNEKIRNgtigakhaHYLHLDTLGIVNGYLDAVIQEEASIIfpyhNTYGIEAINKTVHDKLMDRFTRKGGCRDQLVECQ 335
                    *********************99999***999999*****************99988777779999****************************** PP

                    HHHHHHHHHH...HHHHCH...CEETTETTSEETTSSEE............HHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT--TTSSS--SB CS
  Peptidase_S10 227 nllekaskva...vekenk...glnvynileeccklkae............lkksstdaqggedpydesyvekylnkkeVrkalhvnasvkkweec 304
                    ++l++   ++   ++   +     +v + l++      +                 + a +++dp+ +s+++ yl++++   al+      +++  
     CCE28558.1 336 RDLQDQRLDKntiNM---ArdlPTDVCSKLTD------DcvlvgeiafgdsEYARFDIAHPKHDPFPPSHMHGYLADEKTLGALGS---PVNFTYI 419
                    ***999864322211...11223333333333......14455557777764445578899***********************94...3667777 PP

                    -HHH...HHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCEEEETTTCESEEEEEEEETTEEEEEETT- CS
  Peptidase_S10 305 ndsv...feqleddisksveeileellesglrvliynGdvDlicnvlgteawikklelsgkkefrpwevspkkengqvaGyvkeyenltfltvkga 397
                    +  v   f+ + d+++  + + +  ll+sg++v + +Gd D++cn++g e+++ ++ +s +++f ++ + p  ++   +G +++++n++f++v +a
     CCE28558.1 420 SFPVsmgFASTLDEVHGGFLDAVGYLLDSGVKVHMMYGDRDFACNWIGGENSSLAIPYSRAQNFGKAGYAPMMTSAGQGGLTRQFGNFSFTRVLQA 515
                    77666699999************************************************************************************* PP

                    -SSHHHHSHHHHHHHHHH CS
  Peptidase_S10 398 GHmvPedkpeealqller 415
                    GHm P ++pe+a++++ r
     CCE28558.1 516 GHMIPSYQPEAAYEIFMR 533
                    **************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4626.28
//
Query:       CCE28559.1  [L=579]
Description: uncharacterized protein CPUR_02246 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-61  208.3   1.4    2.6e-61  207.3   1.4    1.4  1  PUL            PUL domain
    2.1e-33  115.3   0.0    3.5e-33  114.6   0.0    1.4  1  Peptidase_C97  PPPDE putative peptidase domain
    4.1e-12   46.0   0.0    8.5e-12   45.0   0.0    1.5  1  Thioredoxin    Thioredoxin
    3.4e-06   27.0   0.0    7.1e-06   26.0   0.0    1.5  1  TraF           F plasmid transfer operon protein
    0.00012   22.5   0.4    0.00045   20.6   0.1    2.1  2  Thioredoxin_2  Thioredoxin-like domain
     0.0059   15.9   0.0      0.011   15.0   0.0    1.4  1  T4_deiodinase  Iodothyronine deiodinase
      0.006   16.5   0.0      0.019   14.9   0.0    1.8  2  AhpC-TSA       AhpC/TSA family
  ------ inclusion threshold ------
      0.099   12.4   0.0       0.19   11.5   0.0    1.4  1  Redoxin        Redoxin


Domain annotation for each model (and alignments):
>> PUL  PUL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.3   1.4   1.2e-64   2.6e-61       3     276 ..     301     569 ..     300     570 .. 0.87

  Alignments for each domain:
  == domain 1  score: 207.3 bits;  conditional E-value: 1.2e-64
         PUL   3 qktyllfkk.anldkllkKlkelNakllsa.g.qkdlalsd............eelatLeallaalessseatqlelllklltsWppedrfPalDLlRl 86 
                 + +++ ++k ++++kl +K+++    + s+ + +    l +            + l++L +l+++l            ++++ s++p+ +f+++DL+R+
  CCE28559.1 301 HAKPVVYQKlPPFEKLDAKMGSD---IASSgQiT---RLRAflqtrasdgaqdAVLPHLGELSSYL------------QHSVASLSPDVLFAVVDLFRC 381
                 678999***************99...33342322...33334445554443333333777777777............********************* PP

         PUL  87 llldprvsayfaeeeggktissllslllssalsssapkalennrmlalRllaNlFssplgrelllskaeslletleslltssll.ssnknlrialatll 184
                 +l+d rvs+y+aee+++ktis++l+ ++++   +++p+a    r++++++++N+Fsspl+  ++ls+ + l++++ +l++ss+l + ++n+r+a+++ll
  CCE28559.1 382 ALADARVSGYYAEEPHHKTISTILDFVNAQ---DACPYAM---RLVTVQMACNMFSSPLFEHEVLSS-TVLRTAFVRLVSSSFLdEVHNNVRVAASSLL 473
                 **************************5555...489****...**********************87.99**************99************* PP

         PUL 185 lNlavllhk.....skdelseedqvellaallealeeeeedsEalyRlLvAlGtlvyaapegealadlarvldakeivkkakkkafekeprvkevak 276
                 +N+++++++     +k +l eedqvel+aal+ea+++e+++ Eal ++L AlG+lvy+a+ +++ladl+r+lda+++++++kk  f++e++++eva+
  CCE28559.1 474 FNISLAHRRartdsNKASLREEDQVELAAALIEAISQETKSMEALQGMLSALGHLVYGASLDGELADLLRALDAQSTIASKKK-HFPNEKLIAEVAD 569
                 *******88888755577****************************************999666*******************.99*********85 PP

>> Peptidase_C97  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.0   1.6e-36   3.5e-33       2     149 ..       2     139 ..       1     141 [. 0.97

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 1.6e-36
                    EEEEEEEETT...TTHHHHHHHHHHSS-----EEEEEEETTEEEE--T.....T-SEEESTT-STT-.S-SEEEEEEEE---HHHHHHHHHHHHTT CS
  Peptidase_C97   2 kvelivyDlsldkkglarrvyptllGkkieGiyhtgvevygleyafggkekeegGifelkpgttsegakpresieigeTevteeevraileelsse 97 
                     v l vyDls   +glar++++ llG ++++iyht++ ++++ey +       gGi  ++pg+++ g +p+e++++g+T+++ + +++++++l+  
     CCE28559.1   2 DVHLLVYDLS---RGLARQMSTGLLGFHLDAIYHTSILLQEREYVY-D-----GGIIAIAPGSSHLG-QPMEKLHLGTTSLPMDIIEEYIDSLRPI 87 
                    699*******...*********************************.5.....7*********7777.**************************** PP

                    --GGG-BTTTB-HHHHHHHHHHHHHS----HHHHTHHHHHHTSHHHHHHTTT CS
  Peptidase_C97  98 ytgdkYnLiskNCnhFtdelvdfLtgkkiPewinrlarivlstptvklllpm 149
                    +t ++Y+L+ +NCn+F+d +++fL+gk iP++i++ +++vl +p++++llp+
     CCE28559.1  88 FTLEAYDLFRHNCNNFSDSFANFLVGKGIPQHIVKMPQAVLDSPMGRMLLPQ 139
                    *************************************************987 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   3.8e-15   8.5e-12      17      93 ..     189     267 ..     172     275 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 3.8e-15
                  TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTT..SHHHHHHTT-SSSSEEEEEETTEEEEEEESS-H CS
  Thioredoxin  17 ekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvde..nedlakkyevegiPtlklfkngkevkkyegare 93 
                  +++ v++ F++  C++Ck + P +++la e+   ++++k+d+ +   +++a++++v++ Pt++ + +gke ++ +ga  
   CCE28559.1 189 KDSCVVIFFTSATCPPCKLMYPIYDQLAGEFGTAITFIKIDIAQpsASEIAHNFSVRATPTFVTLFKGKEENRWSGADG 267
                  4678999999*******************************986336799*******************9999999865 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   3.2e-09   7.1e-06     101     199 ..     161     253 ..     155     262 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 3.2e-09
        TraF 101 rrPvsnlarkvl.ndarkeekeaalkklakeygLlfFyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvl 198
                 ++P++++ +       r+++ +++l  ++++   +fF +++cp c+ + pi++++a ++g ++ ++++d  +  +       ++ a +++v+ tP++v 
  CCE28559.1 161 QIPAKEAKVPGVvSVSRSDQLASMLDGAKDSCVVIFFTSATCPPCKLMYPIYDQLAGEFGTAITFIKIDIAQP-SA------SEIAHNFSVRATPTFVT 252
                 5555555554441455666778889999999**************************************8755.23......35899*********997 PP

        TraF 199 v 199
                  
  CCE28559.1 253 L 253
                 5 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1     2e-07   0.00045       8      98 ..     193     264 ..     187     269 .. 0.80
   2 ?   -3.5   0.0       6.2   1.4e+04      14      25 ..     411     422 ..     403     446 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2e-07
  Thioredoxin_2   8 vlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlpG 98 
                    v+++ft+ +Cp Ck+++   ++l           ++ +  + +++i+ a+  +         +e a+ + vr+tPt+v ++ gk + +r+ G
     CCE28559.1 193 VVIFFTSATCPPCKLMYPIYDQL---AGE-----FGTA--ITFIKIDIAQPSA---------SEIAHNFSVRATPTFVtLFKGK-EENRWSG 264
                    8999**************99999...333.....6666..6666666666665.........79************99899999.6667776 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.2
  Thioredoxin_2  14 dpdCpyCkklkk 25 
                    ++ Cpy  +l +
     CCE28559.1 411 QDACPYAMRLVT 422
                    788999766654 PP

>> T4_deiodinase  Iodothyronine deiodinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     5e-06     0.011      84     149 ..     172     235 ..     152     252 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5e-06
  T4_deiodinase  84 vvrvs.gteschildfaqgnrPlvlnfGsatcPpflaklsafkrlveefssvadfliiyieeahpsd 149
                    vv vs + +   +ld a+ +  +v+ f satcPp     + + +l  ef + + f+ i i    ps 
     CCE28559.1 172 VVSVSrSDQLASMLDGAK-DSCVVIFFTSATCPPCKLMYPIYDQLAGEFGTAITFIKIDIA--QPSA 235
                    555541334466777665.56799*****************************99766664..4443 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   8.3e-06     0.019      20      56 ..     185     220 ..     161     247 .. 0.78
   2 ?   -2.7   0.0       2.3   5.2e+03      43      70 ..     510     537 ..     507     557 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.3e-06
                 CHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCC CS
    AhpC-TSA  20 lsdykgkpvvlffypkdwcpvCttelpalaklyeefk 56 
                 l+  k++ vv+ff+++  cp+C+   p + +l+ ef 
  CCE28559.1 185 LDGAKDSCVVIFFTSA-TCPPCKLMYPIYDQLAGEFG 220
                 3445778999999999.******************97 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.3
                 HHHHHHHHCHHHCCCTTEEEEEEESSSC CS
    AhpC-TSA  43 telpalaklyeefkergvevigvsvdsp 70 
                 +e +++++l   + ++g  v+g s d +
  CCE28559.1 510 QETKSMEALQGMLSALGHLVYGASLDGE 537
                 6888999999999999999999998865 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.3e-05      0.19      27      55 ..     188     216 ..     164     242 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.3e-05
                 TTSEEEEEEESTTT-HHHHHTHHHHHTHH CS
     Redoxin  27 kgkkvvvnfvpgafcPtCsaehpylekla 55 
                 ++ + vv+f+++a+cP+C+   p  ++la
  CCE28559.1 188 AKDSCVVIFFTSATCPPCKLMYPIYDQLA 216
                 4455799999999*****99888666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.21s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4561.97
//
Query:       CCE28560.1  [L=158]
Description: uncharacterized protein CPUR_02247 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   15.0   1.0       0.03   14.4   1.0    1.3  1  zf-CCHC    Zinc knuckle
       0.02   14.7   0.5      0.034   14.0   0.5    1.3  1  zf-CCHC_2  Zinc knuckle
       0.07   12.9   1.0       0.16   11.7   1.0    1.5  1  zf-CCHC_5  GAG-polyprotein viral zinc-finger


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.0   5.1e-06      0.03       2      16 ..     109     123 ..     108     125 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.1e-06
                 CTSSSSSSSSTTTTS CS
     zf-CCHC   2 kCynCGepGHiardC 16 
                 +C +CG++ H+ r+C
  CCE28560.1 109 QCLRCGSEDHLVREC 123
                 7899*********** PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.5   5.7e-06     0.034       5      19 ..     109     123 ..     109     124 .. 0.97

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.7e-06
   zf-CCHC_2   5 vChiCgkkGHyIqdC 19 
                 +C +Cg+  H +++C
  CCE28560.1 109 QCLRCGSEDHLVREC 123
                 6************** PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.0   2.7e-05      0.16       3      18 ..     108     123 ..     107     124 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.7e-05
                 -B-TTT-SSBS-TTT- CS
   zf-CCHC_5   3 glCpRCkkgkHwardC 18 
                 g C+RC+   H  r+C
  CCE28560.1 108 GQCLRCGSEDHLVREC 123
                 78************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1182.86
//
Query:       CCE28561.1  [L=211]
Description: uncharacterized protein CPUR_02248 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1616.64
//
Query:       CCE28562.1  [L=417]
Description: uncharacterized protein CPUR_02249 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0054   16.0   1.9     0.0067   15.7   1.5    1.4  1  DUF3080   Protein of unknown function (DUF3080)


Domain annotation for each model (and alignments):
>> DUF3080  Protein of unknown function (DUF3080)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.5   3.7e-07    0.0067     163     278 ..     146     261 ..      60     293 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.7e-07
     DUF3080 163 aslqqesainseeleqalqrleksrllgqllrslallsarLnaatelLeeaeanv.lCengkdnekaeiLrnvFekiYiekiQPylaelnsahyqLlpl 260
                 + +  +sa++ ++l qa +   +   +     + a+lsa+ n+ t+l+ee  a+   C++ ++  +a  L   F + Y ++ QP   ++ns  +qL+p 
  CCE28562.1 146 QEAIGQSALAVDSLRQAMEVVTQAASILGAKATSAKLSAK-NTRTALMEELIASHlGCSADEALSRAYQLPPGFMETYGGNSQPAPVSVNSLLTQLQPS 243
                 3466778888888888888876665555555555555555.4567888888888889****************************************** PP

     DUF3080 261 lkqlaekaseepealaay 278
                 ++q ++ a + ++a ++ 
  CCE28562.1 244 IAQYRSSARNWENAASQQ 261
                 ***999988644444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3153.76
//
Query:       CCE28563.1  [L=199]
Description: uncharacterized protein CPUR_02250 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-06   27.4   0.0    1.2e-05   25.0   0.0    2.0  1  DDE_Tnp_4    DDE superfamily endonuclease
    0.00027   20.6   0.0     0.0022   17.7   0.0    1.9  2  Plant_tran   Plant transposon protein
  ------ inclusion threshold ------
       0.11   12.9   0.0       0.18   12.2   0.0    1.3  1  DDE_Tnp_1_2  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0     2e-09   1.2e-05     104     139 ..      93     128 ..      24     142 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2e-09
   DDE_Tnp_4 104 eeevefnraiasarihvErvigrlkgrfrilrsrlr 139
                 + +++fnr++a  r +vErv+g lk++f++l+++ r
  CCE28563.1  93 SMKERFNRHHAGMRSVVERVFGILKKMFSVLKGPAR 128
                 45689**************************88765 PP

>> Plant_tran  Plant transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.06   3.6e+02      52      90 ..      25      64 ..       9      68 .. 0.72
   2 !   17.7   0.0   3.6e-07    0.0022     143     186 ..      95     140 ..      85     144 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.06
  Plant_tran 52 gdkksptiileavasydlwiwhaff.glpgsnndinvldr 90
                g+k + t  + a  ++dl    +++ g +gs nd  ++++
  CCE28563.1 25 GRKGQLTQNVFAAVKFDLTFKYVLLaGAAGSMNDAQMIKE 64
                55555566666667888877666542778*****998865 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 3.6e-07
  Plant_tran 143 kklfaqkqeaarkdverafGvlqarfkivakpar..lwekedlaki 186
                 k+ f ++  ++r  ver fG+l+  f +++ par   w+++  ++ 
  CCE28563.1  95 KERFNRHHAGMRSVVERVFGILKKMFSVLKGPARelNWDQQRCTNF 140
                 6679999*************************98445999887665 PP

>> DDE_Tnp_1_2  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     3e-05      0.18      38      67 ..      95     124 ..      79     128 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3e-05
  DDE_Tnp_1_2  38 pkkqarederarnvvErsfgwlkrrrslat 67 
                  + ++ r  +  r+vvEr fg lk+++s+ +
   CCE28563.1  95 KERFNRHHAGMRSVVERVFGILKKMFSVLK 124
                  5688999999***************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1630.49
//
Query:       CCE28564.1  [L=104]
Description: uncharacterized protein CPUR_02251 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 892.83
//
Query:       CCE28565.1  [L=507]
Description: uncharacterized protein CPUR_02252 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-08   32.7   0.0      1e-05   25.3   0.0    2.5  1  DDE_1          DDE superfamily endonuclease
     0.0001   22.3   0.0    0.00023   21.2   0.0    1.6  1  HTH_Tnp_Tc5    Tc5 transposase DNA-binding domain
      0.005   16.8   0.0      0.014   15.4   0.0    1.8  1  HTH_29         Winged helix-turn helix
  ------ inclusion threshold ------
       0.09   13.0   0.0       0.17   12.1   0.0    1.4  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
       0.15   12.2   0.0       0.91    9.7   0.0    2.4  2  HTH_28         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.9e-09     1e-05       3     126 ..     212     375 ..     210     377 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2.9e-09
       DDE_1   3 rltvllcanaagsekLkplvigkaksprafkn......................gektkkkldv.eyksnrkawltssifeeWL..kvfdkrle..... 71 
                   t+++canaag+   +p+ ++k   p   +                       +     ++++ +++ ++ka     +f+eW+    f +        
  CCE28565.1 212 SSTIVVCANAAGTM-VPPMMVFKT-WPTHLWDisgldgnlrfarsktgcsdegvTLDWIRHFNMhSFELTSKAQSRGVTFTEWFgcDEFMRDPDdpthi 308
                 56999*****9985.799999996.67888887888888888888888887766555566666635888888888888888888655565555589999 PP

       DDE_1  72 ........aekrkil..Llldssrshetvel.leselqniklvflPass.asllqPldqgvvselKa 126
                          e+++i+  L+ld++++   v +   +   +i l  lP+++ +sl+qPld+gv+++l++
  CCE28565.1 309 whdprfkrPEEERIWrlLVLDDFPGEMSVDFmDYCIRFDILLYLLPSHTiSSLMQPLDVGVLQPLNT 375
                 99999999666666444**********9999899999*********99747899*********9985 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.3e-08   0.00023       4      60 ..      79     132 ..      77     139 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.3e-08
                  HHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHT CS
  HTH_Tnp_Tc5   4 lEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRh 60 
                  +E+a++ +i+ l + gip ++e + e+A++l   +a   +p + ++ +W  rF+  h
   CCE28565.1  79 EERAVVAYINWLERAGIPSSREFVEEAANKL---RASRMPPAPPVGGSWYTRFLADH 132
                  79*****************************...577789**************988 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.9e-06     0.014      13      62 ..      34      80 ..      28      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.9e-06
      HTH_29 13 stvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprnrlseeqe 62
                s v+ +A+ +  s++ v r+lk +   G a   d +++grp+n l++ +e
  CCE28565.1 34 S-VRAAAAKYKTSKTAVARHLKSMKLLGKADYSD-KGPGRPKN-LDGSEE 80
                4.99************************766666.889*****.9*9998 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.8e-05      0.17      80     119 ..      29      68 ..      11      77 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.8e-05
                    -----HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSGGG CS
  Acyl-CoA_dh_1  80 agkpdraeasmaKlfaselaqevadlamqllGgaGyleey 119
                    ++kp +++a++aK+++s++a+  + + m+llG+a y++ +
     CCE28565.1  29 KEKPLSVRAAAAKYKTSKTAVARHLKSMKLLGKADYSDKG 68 
                    4555599**************************9888655 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00025      0.91      14      52 .]      34      73 ..      28      73 .. 0.93
   2 ?   -1.9   0.0       1.1   3.9e+03       5      20 ..     430     445 ..     430     445 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00025
      HTH_28 14 svreaArelgisrrtvyrWikryeegGiagLvpr.rrrpr 52
                svr+aA+++ +s + v r +k     G a+  ++ ++rp+
  CCE28565.1 34 SVRAAAAKYKTSKTAVARHLKSMKLLGKADYSDKgPGRPK 73
                89******************************98789997 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
      HTH_28   5 iikllaaGhsvreaAr 20 
                 +i++l++  +v+e+A+
  CCE28565.1 430 VIQALKEKTPVPETAA 445
                 689999999****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3726.40
//
Query:       CCE28566.1  [L=388]
Description: uncharacterized protein CPUR_02253 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-40  139.0   0.0    1.6e-40  138.6   0.0    1.2  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
    0.00033   20.6   0.0    0.00075   19.4   0.0    1.6  1  MobB             Molybdopterin guanine dinucleotide synthesis
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.022   14.5   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.017   15.5   0.1      0.045   14.1   0.0    1.7  2  AAA_16           AAA ATPase domain
      0.024   14.9   0.0      0.058   13.7   0.0    1.6  1  AAA_22           AAA domain
      0.032   14.2   0.2       0.11   12.5   0.0    1.9  2  NTPase_1         NTPase
      0.041   13.8   0.0        9.7    6.1   0.0    2.3  2  RsgA_GTPase      RsgA GTPase
      0.046   12.6   0.0      0.091   11.7   0.0    1.4  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
       0.05   12.8   0.0      0.076   12.2   0.0    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
       0.06   13.1   0.2       0.41   10.4   0.1    2.1  2  AAA_29           P-loop containing region of AAA domain
      0.085   13.4   0.2       0.28   11.7   0.2    1.9  1  AAA_18           AAA domain
       0.17   10.7   0.0        0.3   10.0   0.0    1.3  1  DUF463           YcjX-like family, DUF463


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.0     1e-43   1.6e-40       1     171 [.       6     181 ..       6     187 .. 0.91

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 1e-43
                 EEEEEEESTTCCHHHHHHHHH....CT--SS-EEEEESS-SSCHCCCCCCHCCCT..EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEEECTTT CS
        cobW   1 pvtvltGflGsGKTtLlnhll....enraglklavivNefgevsiDaellretgve.ivelenGciCctlredllkelealeereerldviliEttGla 94 
                 p+t++tGflGsGKTtL+ +ll    +++ ++kla++ Nefg++++D++l ++++ + + e+ nGciCc+l  +l ++le+le++   +d+i++Et+G a
  CCE28566.1   6 PITIITGFLGSGKTTLILNLLpqlrRKNPQYKLALLKNEFGDLAVDSQLASSSAISgVQEMLNGCICCNLVGQLGPALEELERTV-APDRIVVETSGSA 103
                 789*********************9999**********************9995555****************************.9************ PP

                 THHHHHTT...SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHHHHHHT CS
        cobW  95 ePapvaft...eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeeallekleerlrqlnp 171
                  Pa++a++     + k ++ ld+vv v+D++n+ +  e+++ +a+ q  ++dl+v+nK++++ e++  e++ +r+ +l+ 
  CCE28566.1 104 FPATLALEvnrLAREKGKYVLDGVVSVIDVENW-RGYEDTSYTAKIQARYTDLIVFNKWEVAGEDRY-EECVDRVGDLEV 181
                 *****77754433445699**************.89***************************9965.888888887765 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     5e-07   0.00075       3      45 ..       9      53 ..       7      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5e-07
        MobB  3 givgksgsGKTtLleklipelkarg..lrvgtiKhahhgfdvdkp 45
                 i+g+ gsGKTtL+ +l+p+l++++  ++++++K +  ++ vd++
  CCE28566.1  9 IITGFLGSGKTTLILNLLPQLRRKNpqYKLALLKNEFGDLAVDSQ 53
                58899****************98754499*****99999998875 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.5e-05     0.022       1      34 [.       8      38 ..       8      74 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
  Viral_helicase1  1 ivvhGvpGcGKStlirkllrtsliltvnrptael 34
                     +++ G+ G+GK+tli +ll +   l+  +p+ +l
       CCE28566.1  8 TIITGFLGSGKTTLILNLLPQ---LRRKNPQYKL 38
                     589****************88...4444444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     3e-05     0.045      25     127 ..       6     112 ..       2     138 .. 0.58
   2 ?   -2.8   0.0         5   7.4e+03     106     127 ..     246     280 ..     204     294 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd....ggiflrgkcdql..esaipy........salaqalareellrqlldeaesaeleawrekleealaavp 109
                 ++++++G  G+GK++l+  ll +l+++    +  +l+ ++ +l  +s+++          +l  ++    l+ ql+ ++e+ e+  +++++  +++   
  CCE28566.1   6 PITIITGFLGSGKTTLILNLLPQLRRKnpqyKLALLKNEFGDLavDSQLASssaisgvqEMLNGCICC-NLVGQLGPALEELERTVAPDRIVVETS--- 100
                 7899*************888889999966543344666666664422222222222232224444433.555555555555555555555555554... PP

      AAA_16 110 elagaeasrllellkrll 127
                        s++ ++l+  +
  CCE28566.1 101 ------GSAFPATLALEV 112
                 ......345555555555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5
      AAA_16 106 a............avpelagaea......srllellkrll 127
                              a     g+ea          e+l  +l
  CCE28566.1 246 HqsevevlsidlkA-----GSEAdassplAVSTEKLLGFL 280
                 03333333332221.....222222322444444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.9e-05     0.058       7      31 ..       7      31 ..       6      66 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.9e-05
      AAA_22  7 ilvvtGesGtGKTtllrrlleqlde 31
                i+++tG  G+GKTtl+ +ll ql +
  CCE28566.1  7 ITIITGFLGSGKTTLILNLLPQLRR 31
                789****************999843 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     7e-05      0.11       3      28 ..       9      34 ..       7      37 .. 0.90
   2 ?   -2.2   0.0       2.3   3.4e+03     101     115 ..     173     187 ..     166     189 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7e-05
                EEE--TTSSHHHHHHHHHHHH...GG CS
    NTPase_1  3 fiTGppGvGKtTlvkkvlellkssgv 28
                +iTG  G+GKtTl+ ++l +l++++ 
  CCE28566.1  9 IITGFLGSGKTTLILNLLPQLRRKNP 34
                79*******************99875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.3
                 E---STTGGG-HHHH CS
    NTPase_1 101 iDEiGkmElkskkfk 115
                 +D +G +E++++k+k
  CCE28566.1 173 VDRVGDLEVEVAKVK 187
                 8999****9999887 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0065       9.7     101     125 ..       7      31 ..       5      43 .. 0.87
   2 ?    5.2   0.0     0.012        18      46      86 ..     151     190 ..     143     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0065
                  EEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelel 125
                  ++++ G  G GK+tLi +llp+l+ 
   CCE28566.1   7 ITIITGFLGSGKTTLILNLLPQLRR 31 
                  68999**************999765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.012
                  T-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTT CS
  RsgA_GTPase  46 giepvivlnKiDlleeeeeleelkeelealgyevllvsakt 86 
                  + + +iv+nK +++ e++ +ee  +++ +l++ev +v++++
   CCE28566.1 151 RYTDLIVFNKWEVAGEDR-YEECVDRVGDLEVEVAKVKSTR 190
                  55679************9.***************9998775 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.1e-05     0.091      18      44 ..       8      34 ..       7      43 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.1e-05
  TrwB_AAD_bind 18 ilivGttGsGKtqalekllrairargd 44
                   ++i+G  GsGKt+ + +ll ++r+++ 
     CCE28566.1  8 TIITGFLGSGKTTLILNLLPQLRRKNP 34
                   689********************9986 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.1e-05     0.076       3      55 ..       7      58 ..       6      69 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-05
     DUF2075  3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakke 55
                + ++tG  G+GKt + lnll +l + ++ +++  l++N+   l++ ++la+++
  CCE28566.1  7 ITIITGFLGSGKTTLILNLLPQL-RRKNPQYKLALLKNEFGDLAVDSQLASSS 58
                579********************.888999999999**999999999998876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00027      0.41      24      39 ..       7      22 ..       3      29 .. 0.91
   2 ?   -0.4   0.0      0.65   9.6e+02       4      20 ..     131     147 ..     128     156 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
      AAA_29 24 atlltGpsGsGKSTll 39
                +t++tG  GsGK+Tl+
  CCE28566.1  7 ITIITGFLGSGKTTLI 22
                589************8 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.65
      AAA_29   4 lqlvNWgtfdghtieid 20 
                 +++ NW  +++++++ +
  CCE28566.1 131 IDVENWRGYEDTSYTAK 147
                 7899*****99666554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00019      0.28       2      40 ..       9      57 ..       9     141 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
      AAA_18  2 lltGtpGvGKttlakeL....skrl.gf.....gvnlrdvakengllle 40
                ++tG  G+GKttl  +L    ++++ ++       + +d+a +++l  +
  CCE28566.1  9 IITGFLGSGKTTLILNLlpqlRRKNpQYklallKNEFGDLAVDSQLASS 57
                79************99977765555455777776666666666666555 PP

>> DUF463  YcjX-like family, DUF463
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0002       0.3       5      38 ..      10      43 ..       7      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0002
      DUF463  5 vTGLsraGKtvfitsLvnqLlaaekkarlplfea 38
                +TG+ ++GKt++i  L  qL +++ + +l+l++ 
  CCE28566.1 10 ITGFLGSGKTTLILNLLPQLRRKNPQYKLALLKN 43
                8********************9999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2845.57
//
Query:       CCE28567.1  [L=403]
Description: uncharacterized protein CPUR_02254 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2537  (0.141503); expected 358.6 (0.02)
Passed bias filter:                      767  (0.0427799); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 2838.29
//
Query:       CCE28568.1  [L=1306]
Description: related to na+/k+/2cl-cotransporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-60  203.4  34.4    6.4e-60  203.1  34.4    1.1  1  AA_permease    Amino acid permease
      4e-24   85.5   3.8    1.5e-09   37.5   0.1    3.2  3  SLC12          Solute carrier family 12
    4.7e-16   58.6  40.1    7.6e-16   58.0  40.1    1.2  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.1  34.4   1.1e-63   6.4e-60       2     478 ..      29     495 ..      28     496 .. 0.91

  Alignments for each domain:
  == domain 1  score: 203.1 bits;  conditional E-value: 1.1e-63
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp.ksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  v v   ++++++ +f++ g +l+q+G lg++  ++ a+ + +l++lsl++ia+ng  ++gg+y+++sr+lgpe+G++iG+++++ ++++ a+ ++++ 
   CCE28568.1  29 VYVPVCLNIMSILMFLRFGLILGQVGFLGIVGLLVTAYSIDLLTTLSLSAIASNGEvRGGGAYYLISRSLGPEFGGAIGILFFLAQALNTAMNIVGLL 126
                  6677789**********************9999999*********************************************99999999999999999 PP

  AA_permease  99 iliqfwelvtdlpkawvt.....gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfa 191
                   +i +   v +++   ++      +  l++ ++++l+g   + +a+ +l++i+ +ai++  +  +i+ a   +n++ g+ ++g ++ ++ nn+ p+ +
   CCE28568.1 127 DCIRLN--VGAAFPHGYWtiyslQTAALMLCTGMCLLGSTIFSKASNLLLVILTVAIVSIPVS-AIFKAPFVNNDA-GIVYTGMSLNTLVNNFMPNLD 220
                  999999..888876777799999888899999************************9996555.589999998888.9******************88 PP

  AA_permease 192 keeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvla 289
                  k  +  ++ f  +f i+++a +Gi ++a ++g++ dP+k+iPk++l ++++++i+Y +++l++  +++r++  +l+ ++ +          s  ++ a
   CCE28568.1 221 KDVYRGMSTFRDLFGILFPATSGIFAGASMSGDLNDPSKAIPKGTLWAMLTTFIVYFFVILSMACTISRDS--FLANANIV----------SLTNLSA 306
                  999999***************************************************************99..44433333..........3466666 PP

  AA_permease 290 plinaviltaalssansslysasRvlyslakdglaP...kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwllii 384
                  p+i a+  + + +sa+ +++ + +++++lakd+l+P    ++++ +k+ +P+ aill+++i+++al la ln +a+ ++  +     +++l+++ll i
   CCE28568.1 307 PVILAGECAVTAFSALMGIIGSAKLFQALAKDRLLPglsVFGRGTKKNDEPILAILLTYAIAQVAL-LADLNQIATFISMGYQMTFFVMNLACFLLKI 403
                  66666666666666666788999***************999999*********************9.78899999*********************** PP

  AA_permease 385 lsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrpqll 478
                   s ++fR+++k  +++++  g  +  + +++i    a i+i+++ ++++++ +  +pk wg +s+ + y++v  +l++l+    h+k++rpq+l
   CCE28568.1 404 GSAPNFRPSFKWFNWQTAYTGSLLSAAAMFFIDETYAAIAICVLIFVFLLIHYLCPPKRWGDVSQNLIYHQVRKYLLRLKP--EHIKFWRPQIL 495
                  *********************99999999999888888888888888888888889**********************975..68899999976 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.1   2.4e-13   1.5e-09       3      88 ..     506     594 ..     504     602 .. 0.85
   2 !   13.7   0.0   3.8e-06     0.023     253     308 ..     725     781 ..     723     786 .. 0.89
   3 !   33.3   0.6   4.4e-12   2.6e-08     365     424 ..    1239    1302 ..    1235    1304 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 2.4e-13
       SLC12   3 aLvdlahlitknvsLlicghvvkeklsqklreeltkkaqkwLkkr....kikaFyalvdaesleegakaLlqasGlgklkpnilllGyks 88 
                  L+++++ + k+ sL i ghv+ ++  ++  +e   ++q w +      +ikaF +l+ + s+  g+++L+ ++Glg ++pn++++G+ +
  CCE28568.1 506 RLIQFCNYL-KKGSLYILGHVIVTDDFNTGVHEARLQQQAWTRYIsefsRIKAFVQLTMSPSIIWGVRNLVLSAGLGGMRPNVVVMGFYN 594
                 689999988.678********9999888877777666666665433445**************************************965 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.8e-06
       SLC12 253 DDGgLtlllpyilstrkkw.kecklRvFalankkeeleeeqremaslLskfridysd 308
                 D   L+l l +il + + w     +Rv +  + ++e++ee  ++++lL+k+rid + 
  CCE28568.1 725 DTYTLILQLGHILHSVRAWgDAFAVRVIVFVEYEHEVDEETSRVKALLEKLRIDAHV 781
                 55679999***********66679*******9*********************9865 PP

  == domain 3  score: 33.3 bits;  conditional E-value: 4.4e-12
       SLC12  365 rqlrlrElLkehSskanLivmsLPvprkgavsa....alYmaWLevLtkdlpPvlLvRGnqtsv 424 
                  ++l l+El+++hS+++++i+ +LP+p  g+ s+      Y++ +e+L ++lpP+l+v  n+ +v
  CCE28568.1 1239 QHLILNELMRRHSKQTAVILTTLPIPSEGTSSDekstIQYLSDVELLCSELPPMLMVLSNNLTV 1302
                  7899************************99875221168******************9887665 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0  40.1   1.3e-19   7.6e-16      23     399 ..      45     451 ..      23     475 .. 0.74

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 1.3e-19
  AA_permease_2  23 n...laasggpalilwvwiavligslavllvyaElssa.lprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaasyl.lnalgpdlqg 113
                         ++ +g + i+ +++++  + l   l +  ++s    r gG+y   ++  g+ ++   ++++++a+++ +a  ++ ++  + ln +g  + +
     CCE28568.1  45 RfglILGQVGFLGIVGLLVTAYSIDLLTTLSLSAIASNgEVRGGGAYYLISRSLGPEFGGAIGILFFLAQALNTAMNIVGLLDCIrLN-VGAAFPH 139
                    233356789999999999999999999999999998886888899***************************6666666677777544.6778899 PP

  AA_permease_2 114 ntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.........stetdtffpn.gwpgv.....ll.g 193
                      w++y +  a l+l++ ++++g  + +k+ n l ++ + + ++ + + +++ + +  ++++          t  ++f+pn   + +     ++  
     CCE28568.1 140 GYWTIYSLQTAALMLCTGMCLLGSTIFSKASNLLLVILT-VAIVSIPVSAIFKA-PFVNNDAgivytgmslNTLVNNFMPNlDKDVYrgmstFRdL 233
                    99****************************999777777.35555554555544.55555557777766554444457777433322333444436 PP

  AA_permease_2 194 llivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilialsllga 287
                    ++i + +++G+ + a++s    ++ k +pk++ +++l+++++y++v ++++  ++ d++  ++n++      + ++     a ++ ++ + + +++
     CCE28568.1 234 FGILFPATSGIFAGASMSGDlnDPSKAIPKGTLWAMLTTFIVYFFVILSMACTISRDSFLANANIV-----SLTNLS----APVILAGECAVTAFS 320
                    6667889*************97788**********************************9888843.....455545....556666777777778 PP

  AA_permease_2 288 intavigssrvlealardgvlP..rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphlk 380
                    +++ +igs+ +++ala+d+ lP  ++f +   k+  pi ai lt+ ++++ l    la   ++n +++  s+g+   ++++ +++++l++ +    
     CCE28568.1 321 ALMGIIGSAKLFQALAKDRLLPglSVFGRGTkKNDEPILAILLTYAIAQVAL----LA---DLNQIATFISMGYQMTFFVMNLACFLLKIGSAPNF 409
                    888999******************999998889***************9864....44...69**************************9988776 PP

  AA_permease_2 381 r...pgk....................ilvaiigalfllfll 399
                    r   +++                     + a+i++++l+f++
     CCE28568.1 410 RpsfKWFnwqtaytgsllsaaamffidETYAAIAICVLIFVF 451
                    634422255556666666555555544133333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.47
# Mc/sec: 8434.97
//
Query:       CCE28569.1  [L=745]
Description: probable AVT3-involved in amino acid efflux from the vacuole [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-84  284.6  34.0    1.2e-84  284.4  34.0    1.0  1  Aa_trans  Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.4  34.0   6.9e-89   1.2e-84       3     408 ..     347     728 ..     345     729 .. 0.96

  Alignments for each domain:
  == domain 1  score: 284.4 bits;  conditional E-value: 6.9e-89
    Aa_trans   3 ssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvsy 101
                  s + a+l l+k++vG+GvL+LP A  ++G++++ ++ll v++ls+y+++lLv ++ +        s+gd+g  l+G++++++i  +i+++++G++ +y
  CCE28569.1 347 NSPMNAMLLLLKSFVGTGVLFLPRAYLNGGMLFSNLVLLGVSILSYYCFVLLVSTRLK-----IEGSFGDMGGILYGKWMRFLILTSIVISQIGFVAAY 440
                 68899***************************************************95.....569********************************* PP

    Aa_trans 102 liligdllpaifesffdt.lllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkasklkglflaig 199
                 +++++++l a+++ +++  + +s   +il++++i++p+sl++++ kL++++l+a+ ++++   +++l+ ++ ++l+++g ++  +   +++k+++l+ig
  CCE28569.1 441 TVFTAQNLRAFIQAVSNCsTSISIPLLILMQTAIFLPFSLLRDIGKLGFTALIADAFIMI--GLAYLFYYDVITLNANGLADIIM---FNKKDWTLFIG 534
                 *************987668999************************************96..69999999999999999999977...999******** PP

    Aa_trans 200 iivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfplqlhplrqvv 298
                 +++F+f+g+ ++++iq+++k+pskf+   +vl l++i++tvl++++G + Y+++G+++++++llnlp+ + + + v+ll+  +++ls+plq++p+++++
  CCE28569.1 535 TAIFTFEGIGLIIPIQESMKHPSKFP---RVLFLVMIIITVLFTVMGAISYAAYGSKTETVVLLNLPQDDKFVNGVQLLYSCAILLSTPLQIFPAIRII 630
                 **************************...9********************************************************************* PP

    Aa_trans 299 enllikkeavagasekeapkskllrlvirlllvvityliA.lsvpslakvlslvGatsstplsfilPalfhlkliktekksleklvkkkildlicivlg 396
                 e+ l+++      s+k +p +k+ ++v+r+++v++  +iA   + +l+k+++lvG ++++pl++i+P+l+h+k+   +k     l+  +i d++  ++g
  CCE28569.1 631 ETELFTR------SGKYNPWIKWKKNVFRFFMVMLCSTIAwGGADHLDKFVALVGNFACIPLVYIYPPLLHFKAVARNK-----LW--RISDIVLCMFG 716
                 *****98......***************************889*******************************99996.....44..46699****** PP

    Aa_trans 397 lllvfyglavli 408
                 +l+++y ++ +i
  CCE28569.1 717 FLAMAYATSLTI 728
                 *******99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 5591.47
//
Query:       CCE28570.1  [L=330]
Description: related to sucrose cleavage protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-56  190.3   0.0    3.8e-56  190.0   0.0    1.1  1  Suc_Fer-like  Sucrase/ferredoxin-like


Domain annotation for each model (and alignments):
>> Suc_Fer-like  Sucrase/ferredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.0   0.0   2.1e-60   3.8e-56       1     195 []      13     309 ..      13     309 .. 0.90

  Alignments for each domain:
  == domain 1  score: 190.0 bits;  conditional E-value: 2.1e-60
  Suc_Fer-like   1 llgtvkayskhvlvatgksdWpskvedekg..slaealkklk................lllsasslp...eekseeekttvlllPdfklveevt... 73 
                   l+g +++ys+hv+v+tg++dW sk+e+e+g  +l+++l+++                 + l +ss+p   +  +++e ++v+llP+fk+v  ++   
    CCE28570.1  13 LNGAIARYSEHVIVCTGQDDWASKIENENGgdNLVAELRDIIvpkgvrgdskdkrfvgVSLLNSSFPssiSPLEDTECNSVYLLPSFKYVAFLPrky 109
                   7899********************98887789*******98459**************9999*****99966778999************9888644 PP

  Suc_Fer-like  74 pssveelvkeflkp............................kvrklpekaliLvCshktrDarCgilapllrkelerelreke............. 129
                   +  + ++++ +l p                            ++ k  +++++L+C+h+ rDarCg ++pllr+e+e++l++ +             
    CCE28570.1 110 KIGLLAIAQGYLLPeearkehtkkarighkkrsrdiasqrilSSVKDVRDVMVLICGHGGRDARCGSFGPLLRDEFETKLAQAGikvargavevhye 206
                   333347778888877888888888888889999999999888555668899******************************9446667778888899 PP

  Suc_Fer-like 130 ..........................derpggvrvgfisHvGGHkfAgnviiyrkek...........agqgiwygrvepedvegiveetilkgkvv 189
                                             ++ ++++rvg isH+GGH fAgnviiy++++           ag giwygrvep++veg++eeti kg v+
    CCE28570.1 207 kkvapwektqetkevpwwekfkqegmEKGKKTARVGLISHIGGHSFAGNVIIYIPPDyegpggekhelAGCGIWYGRVEPKHVEGLIEETIVKGVVI 303
                   99999999**************999888888****************************************************************** PP

  Suc_Fer-like 190 kellRg 195
                   ++++Rg
    CCE28570.1 304 QDMCRG 309
                   *****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2623.74
//
Query:       CCE28571.1  [L=68]
Description: uncharacterized protein CPUR_02258 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       161  (0.00897987); expected 358.6 (0.02)
Passed bias filter:                      153  (0.00853366); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 616.43
//
Query:       CCE28572.1  [L=431]
Description: related to cytochrome-c mitochondrial import factor CYC2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-09   35.7   0.0    1.9e-08   34.5   0.0    1.7  1  FAD_binding_6  Oxidoreductase FAD-binding domain
      1e-06   29.3   0.1    2.6e-06   28.0   0.1    1.7  1  NAD_binding_1  Oxidoreductase NAD-binding domain
     0.0016   18.6   0.0     0.0025   18.0   0.0    1.4  1  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   3.2e-12   1.9e-08      38      94 ..     135     195 ..      89     199 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 3.2e-12
                    EEECETTCCEEEEEE.BSSTT....ECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE CS
  FAD_binding_6  38 lrlkikgeaviRsYtpissen....ekGelellvkvypgGkmsqaLdelkigdtleikGPl 94 
                    +++k ++ ++ R Ytp+  ++     +G+l + v+ + gG+ms++L++l++g+ + ++GP+
     CCE28572.1 135 VEFKQPEVQIARHYTPLPPHHdedpRDGKLRFYVRAVDGGEMSNYLRRLRVGNEVYLRGPH 195
                    5566778899*****986553223578*********************************8 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   4.4e-10   2.6e-06       1      63 [.     212     271 ..     212     299 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 4.4e-10
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEE..E CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvav..v 63 
                    ++agGtG+ P ++v ra+le+ +d  ++ l++++r++e++   + + ++a+++p+  kv+++  +
     CCE28572.1 212 FLAGGTGVVPGMQVARAVLEN-DDSAQMKLLWAVRKREEV---QSVTSAAQQQPW-WKVWTTgiQ 271
                    79******************9.99**************99...688888888888.678877542 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.1e-07    0.0025       1      53 [.     207     254 ..     207     330 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.1e-07
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfk 53 
                    ++nv+++agG+G+ p + +++ +l++ +       ++kl w+vr++++++ ++
     CCE28572.1 207 CKNVVFLAGGTGVVPGMQVARAVLENDD-----SAQMKLLWAVRKREEVQSVT 254
                    589************************8.....999**********9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3141.82
//
Query:       CCE28573.1  [L=1325]
Description: related to neomycin resistance protein NEO1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-50  172.5   3.9    1.3e-50  172.5   3.9    1.8  3  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
    8.5e-16   57.4   0.2    2.4e-15   56.0   0.2    1.7  1  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    1.4e-13   51.6   0.9    8.2e-08   32.8   0.1    3.2  2  Hydrolase        haloacid dehalogenase-like hydrolase
    7.4e-09   35.4   0.2    0.00021   20.8   0.0    2.9  2  E1-E2_ATPase     E1-E2 ATPase
    5.6e-06   26.3   0.0    8.2e-05   22.6   0.0    2.3  2  Cation_ATPase    Cation transport ATPase (P-type)
     0.0025   17.6   0.1     0.0064   16.3   0.1    1.6  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
        3.8    7.9   6.3         45    4.4   0.6    3.5  3  TFIIE-A_C        C-terminal general transcription factor TFII


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   1.6         7   1.8e+04      62      74 ..     200     211 ..     182     242 .. 0.48
   2 ?   -3.2   0.2       2.1   5.5e+03     130     132 ..     574     576 ..     516     617 .. 0.49
   3 !  172.5   3.9   5.1e-54   1.3e-50       2     248 ..    1089    1316 ..    1088    1317 .. 0.96

  Alignments for each domain:
  == domain 1  score: -4.8 bits;  conditional E-value: 7
  PhoLip_ATPase_C  62 yeswlltlynllf 74 
                      y+++++ ++n+ f
       CCE28573.1 200 YNEFSF-FFNMYF 211
                      222221.222222 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.1
  PhoLip_ATPase_C 130 ffl 132
                      +++
       CCE28573.1 574 VLV 576
                      111 PP

  == domain 3  score: 172.5 bits;  conditional E-value: 5.1e-54
  PhoLip_ATPase_C    2 raSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsael 93  
                        a+D++i+qF++L +LL++hGr+sy+R +kl ++++++ +++ ++q ++++   f    ly++wll+ y +++t+ pv+ l ++d+dv+++l
       CCE28573.1 1089 LAADFSIEQFHHLVKLLVWHGRNSYKRSAKLAQFVIHRGLIIAVCQTMYSIAMKFEPDGLYKDWLLVGYATIYTAAPVLSL-VLDKDVDENL 1179
                       69******************************************************************************9.********** PP

  PhoLip_ATPase_C   94 llkyPelYklgqknklfnlktfllwileglyqsliifflsylvlddssfsdgktndlqlfgtlvftalvlvvnlkvaletktwtliliilil 185 
                       +  yPelYk++++++ ++++tf++w++ ++yq+ +i  ls ++++         +d + + ++++t+lvl  +++va+e++tw+ ++i++il
       CCE28573.1 1180 ANLYPELYKELTEGRSLSYRTFFVWVFVSVYQGGMIQGLSQILTQ---------VDGKKMVAVSYTVLVLNELIMVAIEITTWHPVMILSIL 1262
                       ***************************************888875.........677899******************************** PP

  PhoLip_ATPase_C  186 gsillyflflllyssllpsssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtffp 248 
                       g++l+y+ ++ ++  ++         + +++ ++ f + +l + +++l+p ++ k+++r+++p
       CCE28573.1 1263 GTFLVYVGSIPFLGDYF---------DLKFVITWGFVWRILAIGAISLIPPYAGKLITRAIKP 1316
                       *************9954.........5788899**************************9988 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.2   9.3e-19   2.4e-15      11      65 ..     176     230 ..     154     232 .. 0.85

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 9.3e-19
  PhoLip_ATPase_N  11 kkkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqisplspvt 65 
                      +++++ N +s++KYt+ltFlp  L+++F+ + N+YFL++a  q iP+++     t
       CCE28573.1 176 ASRFPANIVSNAKYTALTFLPITLYNEFSFFFNMYFLLVAASQAIPALRIGYMST 230
                      459*******************************************998766655 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   3.2e-11   8.2e-08       3     154 ..     648     967 ..     646    1007 .. 0.70
   2 !   15.6   0.1   5.8e-06     0.015     174     210 .]    1037    1074 ..    1015    1074 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 3.2e-11
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTE.................................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................x RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrg.................................a 68 
                  ++ Dk+GTLt+  ++ ++v v                      v +a++   +++++ + +g+                                  +
  CCE28573.1 648 YLLSDKTGTLTQNDMEMKKVHVGT--------------------VSYANEAMDEVKSYVR-QGFHiqptteasshtalvtpsttfsttvnvgatrtrrE 725
                 6789**********9999999998....................3333333222222222.11112222223333322222223333222224444332 PP

                 HHHTHHHHHHHH........HCHHHHHHHHHHHHHHCHHHHHH........................................................ CS
                 xxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxx........................................................ RF
   Hydrolase  69 yaigkpewltal........dippdlgaaigsaqsqgrtvall........................................................ 103
                 +    ++ + al        +i ++ g++++s+q+   +++                                                          
  CCE28573.1 726 IGARVRDVVLALalchnvtpTIDTEDGKEVTSYQASSPDEIAIvkwtesvglklssrdrksmtlestetgrpvvrvriletfpftsdgkrmgiivhfre 824
                 2222222222222333344433333333333333333333333447777777777777777777777777777778*********************** PP

                 ..............................................................................................TTHHH CS
                 ..............................................................................................xxxxx RF
   Hydrolase 104 ..............................................................................................qaral 108
                                                                                                               + ++l
  CCE28573.1 825 dtravqqslstsgeiwfyqkgadtvmgsivaandwldeetanmareglrtlvvgrkklsyqqyvefstkyqeaslsiasrdagmrrvvshylenDLELL 923
                 *********************************************************************************************999*** PP

                 HHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 109 avftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanq 154
                 +v  ++d+  +  e++  ++ L+ agi++++ltgd  eta+ +a  
  CCE28573.1 924 GVTGVEDK--LQNEVKPSLELLRNAGIKIWMLTGDKVETARCVAVS 967
                 ********..*******************************66644 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 5.8e-06
                  TSHHHHHHHHHHHT.STGGGEEEEESSHHHHHHHHHTT CS
                  xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  174 pspegkvaaireLq.gkpeevamVGDgvnDaaalaaAg 210 
                   sp +k  +++ ++   +++v+ +GDg nD+++++aA+
  CCE28573.1 1037 CSPTQKADVAKLIKdFTKKRVCCIGDGGNDVSMIQAAD 1074
                  58999999999998788999****************98 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   8.3e-08   0.00021      17      46 ..     336     365 ..     308     393 .. 0.84
   2 !   11.1   0.0     8e-05      0.21      67     164 ..     511     609 ..     486     617 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 8.3e-08
                   EEEGGG--TTSEEEEETT-B--SEEEEEEE CS
  E1-E2_ATPase  17 eidakelvpGDivllkagdrvpaDgriveg 46 
                   + ++k+l++GD+++l +g+rvpaD++i++ 
    CCE28573.1 336 NRKSKDLKVGDVLKLSKGQRVPADVVILQC 365
                   4789***********************984 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8e-05
                   TTEE-TT-EEEE.-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT...HHHHHHHHHHHHHS CS
  E1-E2_ATPase  67 gdmvfsGtvvvs.geakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla...eallralallvaai 159
                    +++ + t++ s g+  av++ tg +t+    a +++ ++sk+  l+ ++++l+k+l ++ l++++++++++ + + + +     ++r+l+l+  ++
    CCE28573.1 511 DNTAWANTIIASqGTTLAVILYTGPQTR---SALSTSPSRSKTGLLEYEINSLTKILCALTLALSVVLVALQGFEKTTGNiwyIKVMRFLVLFSTIV 604
                   5677777887766999999999999995...56667777788889999************************9988877766677888888888888 PP

                   -TTHH CS
  E1-E2_ATPase 160 PcaLp 164
                   P+ L 
    CCE28573.1 605 PISLR 609
                   98886 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.2e-08   8.2e-05       2      82 ..     739     848 ..     738     852 .. 0.86
   2 ?    0.6   0.0      0.23   5.9e+02      11      35 ..     945     969 ..     934    1000 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.2e-08
  Cation_ATPase   2 lcNsaaf...sensekdevkllGnktEsALlvlaeklgldteelree...............tkkvqeipFnssrKrmsvvlkle........... 68 
                    lc++ +    +e+ ++ +     +++E+A+++ +e +gl+ ++ +++                 +++++pF+s+ Krm++++  +           
     CCE28573.1 739 LCHNVTPtidTEDGKEVTSYQASSPDEIAIVKWTESVGLKLSSRDRKsmtlestetgrpvvrVRILETFPFTSDGKRMGIIVHFRedtravqqsls 834
                    666666655555556666667899*************888888888889999999999999999*******************999999**99999 PP

  Cation_ATPase  69 pekkvrlyvKGApe 82 
                    +++++  y KGA  
     CCE28573.1 835 TSGEIWFYQKGADT 848
                    99999999999975 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.23
  Cation_ATPase  11 nsekdevkllGnktEsALlvlaekl 35 
                    n+  + + l+G+k E+A  v+++ +
     CCE28573.1 945 NAGIKIWMLTGDKVETARCVAVSSK 969
                    66678899*********99999877 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.5e-06    0.0064     200     227 ..    1051    1078 ..    1040    1097 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.5e-06
                   T--GGGEEEEESSGGGHHHHHHSSEEEE CS
  Hydrolase_3  200 nisleeviafGDgeNDieMLeaaglgvA 227 
                   ++++++v  +GDg ND++M++aa++gv 
   CCE28573.1 1051 DFTKKRVCCIGDGGNDVSMIQAADVGVG 1078
                   578999******************9995 PP

>> TFIIE-A_C  C-terminal general transcription factor TFIIE alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.056   1.4e+02      22      41 ..     146     163 ..     126     181 .. 0.61
   2 ?    4.4   0.6     0.018        45       6      37 ..     291     322 ..     289     334 .. 0.68
   3 ?    0.9   0.2      0.22   5.6e+02      17      41 ..     477     503 ..     470     510 .. 0.44

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.056
   TFIIE-A_C  22 seseveeeeeeeeeeeaddp 41 
                 +++  +++e e+e++e++dp
  CCE28573.1 146 QTH--SQHEGEDEDNEDHDP 163
                 222..233333333333333 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.018
   TFIIE-A_C   6 sesdedskskkaaataseseveeeeeeeeeee 37 
                 s+s  + +++ ++++a ++ ++ +eeeeeeee
  CCE28573.1 291 SDSYRKRTPRWQKEAARHDLTAIQEEEEEEEE 322
                 67777777777777777765555666666665 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.22
   TFIIE-A_C  17 aaataseseveeeeeeeeeee..addp 41 
                 ++a++++s  +++++ee  e+  +d p
  CCE28573.1 477 QDAASHQSVLQKQQDEEGGEDenGDSP 503
                 222333333344444443333124444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.86u 0.26s 00:00:01.12 Elapsed: 00:00:00.42
# Mc/sec: 9434.98
//
Query:       CCE28574.1  [L=2160]
Description: uncharacterized protein CPUR_02261 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-110  370.1   0.0   1.4e-110  369.7   0.0    1.2  1  Sec16_C   Sec23-binding domain of Sec16
    1.5e-31  109.5   0.0    5.9e-31  107.5   0.0    2.2  1  Sec16     Vesicle coat trafficking protein Sec16 mid-region


Domain annotation for each model (and alignments):
>> Sec16_C  Sec23-binding domain of Sec16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  369.7   0.0  1.6e-114  1.4e-110       4     302 .]    1349    1649 ..    1346    1649 .. 0.98

  Alignments for each domain:
  == domain 1  score: 369.7 bits;  conditional E-value: 1.6e-114
                  HHHTT-HHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHH---..---THHHHHHHHHHTTT-HHHHHHHHHH.................-HH CS
     Sec16_C    4 lLlrGdrekAlqlAldkklWahAlliasllgkelwkevvqefvrselk.egensesLrvlyqvfaGnseeavdelvptsaraslq......qaeesk 93  
                   LlrGdre A+++A+dk+lW+hA+li+++++ +l+k+v+qefvr+e++ +g+n+esL++ly+v++Gn  ++vdelvp++ara+lq      +++++k
  CCE28574.1 1349 DLLRGDRETAVWAAVDKRLWGHAMLISQTVSADLYKQVAQEFVRKEVNyPGHNNESLAALYKVLSGNYDDCVDELVPSHARAGLQlvstetSSGPTK 1445
                  69***************************************************************************************99999*** PP

                  HHHHHHHSHHHHHHHHHHTS--HHHHHHHHHHHHHHHTT-HHHHHHHHHHT-SSS.............BSSTTS--B--SSSTTSHHHHHHHHHHHH CS
     Sec16_C   94 eaeealdkWretvalvlsnrspsdseaLtalGdlLaskgrveaahicyllalsqtslfggldspsarlvllgadhvkfessfakdlesilltEiyEf 190 
                  +a ++ldkWret++lvlsnrs++d++ L+alG+lL+s+gr+eaahic+++++s  s+fggld++++++vllg+dh++++++fak+ e+++l+E yE+
  CCE28574.1 1446 DAMDGLDKWRETLTLVLSNRSSDDVRGLNALGKLLSSYGRAEAAHICFIFSRSL-SVFGGLDDANSDFVLLGSDHKRQSEQFAKEAEALQLSEMYEY 1541
                  ***************************************************777.8***************************************** PP

                  HH.HT....TT----CCCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTS-TTSHHHHH.HHHHHHHHHHHT-XXX.....XXX..XXXXXXXXX CS
     Sec16_C  191 alslspaakekfaglphLlayKllhAavLaelGlvseAqkYcdaiaaslksltkkspylhptlleqlkdLserLseapkedksssWlkiskpsldkv 287 
                   l+l   +  ++ag phL+ayKl+hA +Lae+G +++A +Ycdaia+++ ++t++spy+hp+l ++++d+ +rL+++pk d+sssW  +skp++ kv
  CCE28574.1 1542 GLTLGGGVA-ASAGAPHLAAYKLQHAVTLAEYGFRDKAIQYCDAIASAIVAQTRRSPYHHPVLEASVEDFLARLKSSPK-DASSSW--MSKPTMGKV 1634
                  ****97776.559*****************************************************************8.778***..********* PP

                  XXXXXXXXXXXXXXX CS
     Sec16_C  288 wgsleksfnkfvaGd 302 
                  ++s++++fnkfvaGd
  CCE28574.1 1635 SDSMWNRFNKFVAGD 1649
                  **************9 PP

>> Sec16  Vesicle coat trafficking protein Sec16 mid-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.0   6.5e-35   5.9e-31       1     118 []    1172    1290 ..    1172    1290 .. 0.98

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 6.5e-35
       Sec16    1 apvvsFGfGGklvtmfPkrkpsls.gssvsssksspgevkirslkelvpssedaskfPGPlvkgkskkkevlkwLserieeleaevay.aegelesa 95  
                  ap++++G+GG+ +t+fPk++p+++ g sv+ + ++ gevk++++k++ + s++ +kfPGPl kgkskkke+++wL++ i++ e+e+ + + +++ s 
  CCE28574.1 1172 APIMAWGVGGTFITSFPKSIPRYTmGNSVPVTIRTVGEVKVQNIKDVDSLSDSIAKFPGPL-KGKSKKKEAVAWLTAGIDSQEREIPDvSFHSQLSL 1267
                  69***********************************************************.**************************988899999 PP

       Sec16   96 aarraeekllLlkllkllvehdG 118 
                  +a+r+ e+llL+kll++++e+dG
  CCE28574.1 1268 EAKRSVERLLLWKLLRIFIENDG 1290
                  **********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.06u 0.27s 00:00:01.33 Elapsed: 00:00:00.42
# Mc/sec: 15455.54
//
Query:       CCE28575.1  [L=338]
Description: related to mitotic and DNA damage checkpoint protein hus1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-89  298.1   0.0    6.3e-89  297.9   0.0    1.0  1  Hus1      Hus1-like protein


Domain annotation for each model (and alignments):
>> Hus1  Hus1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.9   0.0   3.5e-93   6.3e-89       1     291 [.       1     336 [.       1     337 [. 0.96

  Alignments for each domain:
  == domain 1  score: 297.9 bits;  conditional E-value: 3.5e-93
        Hus1   1 MkFkaqltdaetlkkvlqslsklgkecilrltpeklrfiiiteaddgvqvwaqlqvdaiFeeyeieSn.deneInlevdlaaLlraLksaeaaksvqlr 98 
                 M+F++ l++++t++k++++ls+l+k  ++rl++++ rf++i  +d g qvwa+l+ d iF+ y i+S+ ++n+Inle++l+ L raLksa ++ s+ lr
  CCE28575.1   1 MRFRTELKNIRTFSKLTAALSSLEKIAWVRLSDDTARFTVI--PDVGSQVWASLAMDLIFDGYHIQSAeSNNTINLELPLQPLQRALKSALNSLSASLR 97 
                 *****************************************..9************************556**************************** PP

        Hus1  99 LtkkgrvplLaleisglss....................................reretvvthdiPvkvlseseveelkePelrdpdvsilLPdllqL 161
                 Ltkk   p+L+++i++++s                                    re+e+v+t+diPv+vl+ ++ve++ +P++r+pdv+i+LP+llqL
  CCE28575.1  98 LTKKDGLPVLSMTITTTTSsasnpsgaaaaaarlpsddpfgddvfdqehletslrREHEKVITQDIPVRVLHPETVETIMQPKVREPDVHIQLPPLLQL 196
                 ****************9999******************************************************************************* PP

        Hus1 162 kklvdkfkkl........ssdlltlsankdGeLklvvetdlvrvsskwskLenpeldasqleqlesereaeeeeedaedeaeeakvrvdlkklarvlsv 252
                 k ++d+f+kl         +++l+lsan++G+L+l ++t++  + s+ws+Lenp ld++ql+    e+ +++  ed   ++++a+vrvd+k+++rvlsv
  CCE28575.1 197 KAISDRFTKLalagatpsKAPKLELSANMHGSLRLRIATEATDICSVWSDLENPDLDPAQLDRPVAEHPSTKFRED--GPDRWATVRVDGKDWSRVLSV 293
                 ***********************************************************96555555554444444..7889***************** PP

        Hus1 253 gelkpkkvvacivhetalvlyvlldd.....eedvvltyyipav 291
                 g+l+  +v+ac+++++al+lyv++++      +d+v+tyy++++
  CCE28575.1 294 GRLE-GRVIACFADDHALILYVYVPHyddasADDSVVTYYVQSY 336
                 ****.********************9999999*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2614.93
//
Query:       CCE28576.1  [L=141]
Description: uncharacterized protein CPUR_02263 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.045   13.8   0.7       0.08   13.0   0.7    1.4  1  SPC12     Microsomal signal peptidase 12 kDa subunit (SPC12)
      0.061   13.7   0.1        0.1   13.0   0.1    1.3  1  DUF3262   Protein of unknown function (DUF3262)


Domain annotation for each model (and alignments):
>> SPC12  Microsomal signal peptidase 12 kDa subunit (SPC12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.7   8.9e-06      0.08      38      69 ..      16      47 ..       8      49 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.9e-06
       SPC12 38 lyillagvvltllvvvPpWpfYnrnplkWlkp 69
                 +i l+ ++l ++vv+P W  Y++   ++l++
  CCE28576.1 16 AVISLVLFLLLTFVVLPVWRRYRNRYSQYLPV 47
                678999*****************999998875 PP

>> DUF3262  Protein of unknown function (DUF3262)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.1e-05       0.1      16      50 ..       6      40 ..       1      44 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
     DUF3262 16 spsalklliagillvvllLwaaWalvsvYkgWaee 50
                ++ +l+++i +++  vl+L+++++++ v++++ ++
  CCE28576.1  6 PILSLTIFIPAVISLVLFLLLTFVVLPVWRRYRNR 40
                5667899999*********************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1127.91
//
Query:       CCE28577.1  [L=1790]
Description: probable cytokinesis protein SepA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-84  283.1   2.2    9.6e-84  281.6   2.2    1.7  1  FH2       Formin Homology 2 Domain
    2.9e-63  212.9   0.1    9.1e-63  211.2   0.1    2.0  1  Drf_GBD   Diaphanous GTPase-binding Domain
    2.7e-52  177.2   8.4    8.7e-52  175.6   2.8    3.1  3  Drf_FH3   Diaphanous FH3 Domain


Domain annotation for each model (and alignments):
>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.6   2.2   1.6e-87   9.6e-84       5     372 .]    1129    1521 ..    1126    1521 .. 0.96

  Alignments for each domain:
  == domain 1  score: 281.6 bits;  conditional E-value: 1.6e-87
                  ---SS-B------EESSGGCTTSCCCCTCCHHHHC.........TSHHHHHHHHTBSC--HCCH......HCSCCTTCCESSS-HHHHHHHHHHHHH CS
         FH2    5 ikpkkkLkplhWdkvkpsqdrstvWdklkeesfek.........eldlseleelFsakekkkkkkksekskkskkkkkkvklLdpkrsqniaIlLkk 92  
                   +pkkkLk lhW+kv++ + +   W+ +  + +e+         ++ l+e+e+lF+ake kk           +kk +k +++++++ ++ +I + k
  CCE28577.1 1129 ARPKKKLKALHWEKVDTPETSH--WAAHAPSAEEReekynelsrKGILDEVEKLFMAKEIKKLGG------GTAKKGDKKQIISSDLRKAYEIAFAK 1217
                  69**************999986..**999998888899**********************98885......588999999***************** PP

                  H.TS-HHHHHHHHHTTTTCCCT.............HHHHHHHH.HHCGGHHHHHHH....HCTCTSGTTB-HHH.HHHHHHTT.STTHHHHHHHHHH CS
         FH2   93 l.kltaeeiveaileldeeald.............lellenLl.kmaPtkeelkkl....keykgevseLseae.qFllelvk.iprlekRleallf 168 
                  + + ++e+iv++i+++d+++ld             +++ +n + +maP+  +l+       +++++++eL++ + ++l + ++  +++++R++al +
  CCE28577.1 1218 FsQHSVEKIVQMIIHCDSQVLDnqvvmdflqkddlCNISDNVAkQMAPYGRDLTGPdaksNSHEQDPNELTRQDqIYLHTAFElHHYWKSRMRALWL 1314
                  *******************************************9**********997654466777********99********************* PP

                  HHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTSBHHHHHHHHHHTTSGGGGGHHH CS
         FH2  169 kstfeeeveelkrslealeaaseeLknskkfkklLeliLalGNymNdgtrrgqAkGFkLssLlkLsdvKstdnkttLLHylvkiireklpevldfss 265 
                    +fe ++eel+++++++ ++se+L++s +++++L liL +GNymNd++  +qA GFkLssL +L +vK+++n+ +L +++++i+r+++pe+++f +
  CCE28577.1 1315 TRNFEPDYEELNERINHVMSVSESLRDSVSLMNVLGLILDIGNYMNDAN--KQARGFKLSSLARLGMVKDDKNESSLADLVERIVRSQYPEWEGFAD 1409
                  ***********************************************88..9********************************************* PP

                  HTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCT....TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT.CCHH CS
         FH2  266 eLknvkkaakvnleslekevkklekglkklekelessek....keepsdkflevlkeflkeaeeklkkleeelkeakelvkelveYfgedkk.evsp 357 
                  ++  v  a+k+n+e+l+++ +k+ + +++++ +l+s++     k++p+d+++ ++++ +k+a++k +++e  l+e+++++k+++ ++ged++ e  +
  CCE28577.1 1410 DIGGVLTAQKINVEQLQADARKYIDTIRNVQMSLDSGNLsdpkKFHPEDRVSPIVQRCMKDARRKADQMELYLDEMMKTYKDIMVFYGEDSSdENAR 1506
                  ******************************************************************************************999**** PP

                  HHHHHHHHHHHHHHH CS
         FH2  358 eeffkilreFlkefk 372 
                  + ff++l+ Fl+e+k
  CCE28577.1 1507 RDFFAKLAGFLAEWK 1521
                  ***********9986 PP

>> Drf_GBD  Diaphanous GTPase-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.2   0.1   1.5e-66   9.1e-63       3     187 ..     248     455 ..     246     456 .. 0.98

  Alignments for each domain:
  == domain 1  score: 211.2 bits;  conditional E-value: 1.5e-66
     Drf_GBD   3 kp.deeeidklFeelleel...nlpeekreallalpiekKwqlvvqdkkkkakke...........eklsksksksneeespesyvkklkddslkekql 86 
                 kp d+++i+++F +l++++   nlpe++r+++la+p++kKw+l +qd+ +++++e           ++  ++++ s+ee+ pe+yv+k+++d l++k +
  CCE28577.1 248 KPdDDNVIEQMFLQLMQKRgwhNLPEQARRQMLAYPPQKKWTLLHQDRLTEWQGEqkrrqharsnqNAAPDITTYSDEEGTPEWYVRKVMEDRLDTKGM 346
                 45599*********************************************************99988888999************************** PP

     Drf_GBD  87 esLrVaLrtqplsWvkrFieleGlvaLlnvLskinekkaee........eedlkkeyeiikClKalmNnkvGldavlahksvikllaqsldserlktrk 177
                  sL+V+Lrtq++ WvkrF+e++G+vaL+ +L kin+k+a +        e++l++ey+iikClKalmNnk+G+d++l +++v+ +la++l s r++ rk
  CCE28577.1 347 GSLEVNLRTQQIGWVKRFVECQGQVALVTLLLKINRKTAAGpvpensrvEKNLDREYDIIKCLKALMNNKFGADDALMQQKVLVALATCLISARITSRK 445
                 *************************************************************************************************** PP

     Drf_GBD 178 lvlelLtalc 187
                 lv+e+Lt+lc
  CCE28577.1 446 LVSEILTFLC 455
                 ********** PP

>> Drf_FH3  Diaphanous FH3 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0034        20       1      25 [.     462     486 ..     462     488 .. 0.91
   2 !  175.6   2.8   1.5e-55   8.7e-52       2     195 .]     486     688 ..     485     688 .. 0.97
   3 ?   -1.7   0.1       0.3   1.8e+03     101     168 ..    1320    1397 ..    1315    1399 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0034
                 THHHHHHHHHHHHHHCCT-SSTTHH CS
     Drf_FH3   1 eghekvleatldfkevaeergrfrs 25 
                 egh kv++a+++ k  + e grf  
  CCE28577.1 462 EGHVKVIQAMDEVKAQCGENGRFDA 486
                 69*********************75 PP

  == domain 2  score: 175.6 bits;  conditional E-value: 1.5e-55
                 HHHHHHHHHHHHHHCCT-SSTTHHHHHHHHH........HSS-HHHHHHHHHHHHHHHHSSS.SHHHHHHHHHHHHCTTHHHHHHHHCTSCSHHHHHHH CS
     Drf_FH3   2 ghekvleatldfkevaeergrfrslvgaldel.......enelveykvatmllInalvnspe.dlqfRlhLRseflalGLdkiidklreleneeLddql 92 
                 ++++++e t+d+      rg+++slvga+de+       en l+ey+v+tm l+n++v++pe dlq+R+h+R++f+a+G+++i++k++e+++e Ld+q+
  CCE28577.1 486 AWMRLVEVTIDG------RGKMGSLVGASDEVrtggigmENLLMEYAVTTMMLVNMMVDAPEnDLQLRIHVRAQFTACGIKRILNKMEEFQYELLDKQI 578
                 8***********......*******************************************77************************************ PP

                 HHHHHHHHHHHHHHHHHHT........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     Drf_FH3  93 qafeeerneDeeellerae........dktvdlddpeelfellknkvkdteaepyllsilqhllli.rddeeekesylklleelvsqivlqrtkidpkk 182
                 ++f+++++ D+e++le+++            dl+dp+++ + +++++++++a++y++s+lqhl+li  +d ee+ ++++l+++++s+++++r+ +++  
  CCE28577.1 579 ERFRTNEAIDYEDMLEKENssikdsieGDVQDLSDPVQIADAIQQRIQGSKAQDYFVSALQHLMLIrAQDGEERLRMFQLVDSMLSYVAMDRRLPNM-- 675
                 ***********************99998999***********************************99*************************9666.. PP

                 XXXXXXXXXXXXX CS
     Drf_FH3 183 derkslevaieeL 195
                 d ++sl++++++L
  CCE28577.1 676 DLKQSLNFTVQSL 688
                 9999*****9987 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.3
                  HHHHHHHHHHT...XXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX CS
     Drf_FH3  101 eDeeellerae...dktvdlddpeelfell........knkvkdteaepyllsilqhlllirddeeekesylklleelv 168 
                   D+eel er +   ++   l+d ++l++ l          +  + +a++  ls l +l +  +d++++ s   l+e++v
  CCE28577.1 1320 PDYEELNERINhvmSVSESLRDSVSLMNVLglildignYMNDANKQARGFKLSSLARLGMV-KDDKNESSLADLVERIV 1397
                  5899999999977777777777777777777777776555556667777778888888887.77777788888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1790 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1293  (0.0721178); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.14u 0.26s 00:00:01.40 Elapsed: 00:00:00.45
# Mc/sec: 11905.77
//
Query:       CCE28578.1  [L=277]
Description: uncharacterized protein CPUR_02265 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-28   96.1   1.6    1.7e-27   95.2   1.6    1.5  1  SNRNP27       U4/U6.U5 small nuclear ribonucleoproteins
  ------ inclusion threshold ------
       0.91    8.3   5.8       0.96    8.2   5.8    1.2  1  Apt1          Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> SNRNP27  U4/U6.U5 small nuclear ribonucleoproteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   1.6     2e-31   1.7e-27       1      55 [.     161     215 ..     161     216 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 2e-31
     SNRNP27   1 eeeeemmklmGfggFdtTkgkkvegnnegavkkkkkrkyRQYMNRkgGFNRpLdk 55 
                 +++++m++lmGfggF+tTkgkkv gnn+g v  +kk +yRQYMNR+gGFNRpL++
  CCE28578.1 161 DDQAAMQALMGFGGFGTTKGKKVRGNNAGSVYREKKVEYRQYMNRQGGFNRPLSP 215
                 6899*************************************************97 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.8   0.00011      0.96     317     398 ..      32     147 ..       3     273 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00011
        Apt1 317 ddesdeesessssss.ssssssassssssssrssslelrlkpt.........................................sstssssssesssss 373
                 +d +++ ++ +s+s   s++++++++++ss+++s +  r++ t                                         +              
  CCE28578.1  32 RDRDHDRRRYRSRSRsRSRDRDRDRDRRSSRSPSDKHARDHGTrnsrphprgrdrdrlprrsasptsrsppptslptrprpdenH-------------- 116
                 1111111111111111222222222222222233333333333455555555555555544333334433333333322222220.............. PP

        Apt1 374 sskkrsseesslessaservkssr....................a 398
                             + + ++++   r                    +
  CCE28578.1 117 -----------KKGRRTPSP---RrgpksssssghkkphddddgD 147
                 ...........222222222...0122222233333444333440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 1912.17
//
Query:       CCE28579.1  [L=819]
Description: related to ER glucosidase I [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-170  567.5   5.3   3.4e-170  567.0   1.0    2.5  2  Glyco_hydro_63   Glycosyl hydrolase family 63 C-terminal doma
    1.3e-77  261.0   0.1    5.8e-76  255.6   0.0    2.4  2  Glyco_hydro_63N  Glycosyl hydrolase family 63 N-terminal doma
    4.9e-08   32.3   0.0    8.5e-08   31.5   0.0    1.3  1  Trehalase        Trehalase


Domain annotation for each model (and alignments):
>> Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.27   1.6e+03     454     473 ..      85     104 ..      69     108 .. 0.69
   2 !  567.0   1.0  5.7e-174  3.4e-170       4     491 .]     304     805 ..     301     805 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.27
                     HHHHTSS--SEE-TTT--EE CS
  Glyco_hydro_63 454 qyketGfvweqYddktGkgk 473
                       +  G+ w++Yd +tG  +
      CCE28579.1  85 GQDIHGYGWDEYDARTGGVQ 104
                     55668***********9766 PP

  == domain 2  score: 567.0 bits;  conditional E-value: 5.7e-174
                     HHHHHHHHHHHHHHHHHHHHH----S--S-HHHHHHHHHHHHHHHHHT-EEEEEEEEE--S..S---TT--S---................EEEE CS
  Glyco_hydro_63   4 eelseklekkkkefeekfekkFklkekldlekeelklakealsnllGgigyfyGdslvkre..svleedefvkyk................paeL 80 
                     e ++++le+++++f ++f+++F+l+++++  ++++k+ak+++snllGg+gyf+G+++++r   s+++e e + ++                p eL
      CCE28579.1 304 EDVTKALESASQSFSDRFSAIFDLQTPFK-ADKYQKFAKSMFSNLLGGVGYFHGEQVIDRSyaSEYDE-ENEGFWdeaaaararqqqrlegPYEL 396
                     67899**********************65.56789************************985433333.4455556888999999999999**** PP

                     EE--SBTTTB-SEEHHHHHHHHHHHHHH-HHHHHHHHHHHHTT--TT----SEE--HHHHHTTS-GGGTEE-TT-----HHHHHHHHHHHHHH.. CS
  Glyco_hydro_63  81 ftavPsRpfFPRGFlWDeGFhqllilkwdvdltleilasWldlinedGWipReqilgaearskvPeefvvqkpeianPPtlllalkklleklk.. 173
                     ft+vPsRpfFPRGFlWDeGFh++li++wd+dltlei++sW   ++edGWipReqilg ear+kvPeef+vq+p+ anPPt++l++++++e+l+  
      CCE28579.1 397 FTSVPSRPFFPRGFLWDEGFHLMLISDWDTDLTLEIVKSWYGTMDEDGWIPREQILGVEARTKVPEEFQVQYPHYANPPTMFLVMEDFMERLRtn 491
                     *********************************************************************************************** PP

                     .....................---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTB---STT..........B--TT--SS.......--GGGS- CS
  Glyco_hydro_63 174 .....................lekvsekekeklleflkklyprlkkwfewfrktqkGkleet..........yrWrGRdatakrelnpktLasGl 237
                                          l++ + +++    +fl+++yp l++ ++wfrktq+G+++ +          yrWrGR +t       + L+sGl
      CCE28579.1 492 ngssnrkqketlapedqsplrLHTAHLDHYTLGEDFLRQMYPLLRRQYDWFRKTQRGEIKGYgreaysskeaYRWRGRSET-------HVLTSGL 579
                     ******************9997778888899999***********************************************.......******* PP

                     TTS---SS--TT-B-HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTTEETTTTEE-EEEE-T.................... CS
  Glyco_hydro_63 238 DDyPRashpseaelhvDlrsWvalaakslksiaellgeeeekekyaktekelsenleklhwseeekayaDlgvhtekvklkkkevegqkkelvrv 332
                     DDyPR ++p+ aelhvDl sW++l+aksl++ia++l+ +++++++++t +++++nl++lhwse++++y+D +v+                     
      CCE28579.1 580 DDYPRPQPPHPAELHVDLMSWIGLMAKSLANIADALDLTDDAAELRHTLNAIEHNLNDLHWSEQDGCYCDATVDA-------------------- 654
                     ************************************************************************966.................... PP

                     .TTSS-EEEE---BHHHHHHHHTT-S-TT-THHHHHHHHHH-TTTTEETTEEBSB-TTSTTTT-.....TT-SSSS-B-HHHHHHHHHHHHHH-- CS
  Glyco_hydro_63 333 veeepelqlvealGYvslfPlllklldadsekleklldlikdpeelwsdyGlrslskksslygkrntehdenYWrgpiWininylilsalkhysk 427
                         +e+ql++++GYvslfP+l++ll+++ ++l k+ldl+ d+e+lws +G+rslsk+++lyg+      enYWr+piW+ +ny++l+ l    k
      CCE28579.1 655 ---FEEHQLICHKGYVSLFPFLVGLLQPEDARLGKTLDLLADEEHLWSAHGIRSLSKQDPLYGT-----GENYWRSPIWMPMNYMALKQLLVLGK 741
                     ...578899*******************************************************.....************************** PP

                     -SS-.--HHHHHHHHHHHHHHHHHHHHHHHTSS--SEE-TTT--EESSSS-TTGGGGHHHHHH- CS
  Glyco_hydro_63 428 vegpykekakeiykeLrsnlvnnivkqyketGfvweqYddktGkgkgakeFtGWtslvvlimae 491
                     ++gpy+e+a+e+y+ Lr nlv+ +++++++tGf weqYd++tG g+++++FtGWtslvv +ma+
      CCE28579.1 742 QPGPYRERARELYTRLRGNLVETVYRSWEDTGFAWEQYDPETGAGQRTQHFTGWTSLVVKVMAM 805
                     **************************************************************85 PP

>> Glyco_hydro_63N  Glycosyl hydrolase family 63 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.6   0.0   9.6e-80   5.8e-76       1     227 []      37     264 ..      37     264 .. 0.98
   2 ?    2.7   0.1     0.019   1.1e+02      53      71 ..     772     790 ..     759     815 .. 0.82

  Alignments for each domain:
  == domain 1  score: 255.6 bits;  conditional E-value: 9.6e-80
  Glyco_hydro_63N   1 SLlWGpYrpnlYfGlrpRipkslltGLmWfkvddyasvqkklrhtceqgdglkkygWeeyDgrtgGkqtikDkennldlttsfvKvkdge.gGs 93 
                      SLlWGpY+pnlYfG+rpR+pksl+tGL+W ++++y++v++ lr+tceqg+++++ygW+eyD+rtgG+qti+D++n +d+ttsfvK+++g+ gGs
       CCE28579.1  37 SLLWGPYKPNLYFGVRPRTPKSLWTGLLWGRIETYSDVKDGLRYTCEQGQDIHGYGWDEYDARTGGVQTIHDQGNRIDITTSFVKIPGGAhGGS 130
                      8********************************************************************************************* PP

  Glyco_hydro_63N  94 Wavrvkgkpredak.kaktsvvfYiglegegsleleee..dekglegdvkleGeskelgefkleitegpktnkhpesnhksekekplsktlvls 184
                      Wa+r+kg+ +eda+ ++kt v++Y+++e++g le + e  +e+g++gdv+++G+s++lg++kl +teg  + khp+s+h+ ++++p + tlv s
       CCE28579.1 131 WAARIKGQLHEDAPeDSKTVVYYYVAQEDAGDLEPSAEggSELGFKGDVTFTGRSDSLGDYKLVVTEG--KGKHPTSEHAITEKRPGDVTLVNS 222
                      **************9*******************99666889*************************8..8899********9999******** PP

  Glyco_hydro_63N 185 lkvpdenvwkakdillselkesvqaliekygkekklpppaqvl 227
                          d+ +w+a  +l+++l++   al e+yg e+ +pp++qv+
       CCE28579.1 223 ADFGDDVLWQAPPLLFKQLQNAAVALQEEYGLEN-PPPAWQVY 264
                      *********************************9.9999*987 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.019
  Glyco_hydro_63N  53 kkygWeeyDgrtgGkqtik 71 
                      +++ We+yD+ tg+ q  +
       CCE28579.1 772 TGFAWEQYDPETGAGQRTQ 790
                      5899*********998755 PP

>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   1.4e-11   8.5e-08     306     482 ..     594     785 ..     590     801 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.4e-11
                 -HHHHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE--EETTTTEE----B...GGGGHHHHCT-S-HHHHHHHHHHCHHH CS
   Trehalase 306 pvDLNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvylDYdlkkkkqtnyes...atnlvpLwaglaskeqaaklvakvlek 401
                  vDL + +  + k +a+++d+l  +  ++e ++  ++ ++++++  W+e++g+y D  +   ++++ +      +l+p  +gl ++e+  +   k l+ 
  CCE28579.1 594 HVDLMSWIGLMAKSLANIADALDLTDDAAELRHTLNAIEHNLNDLHWSEQDGCYCDATVDAFEEHQLIChkgYVSLFPFLVGLLQPED--ARLGKTLDL 690
                 59******************************************************999877666655411156899999******99..567788888 PP

                 HCCCCCEESCCCC-SBSSS.....-S.STTSTTEEEHHHHHHHHHHHHHTT-.........HHHHHHHHHHHHHHHHHHHHHCTSEBSCEETTSTS CS
   Trehalase 402 leesgllvaegglgtsllk.....sg.rQWDyPngWaPlqilavegleryge.........eelaerlaerwlktvtkafsdegklvEKYdvtrea 482
                 l + + l + +g+   + +     +g + W  P  W P+ ++a++ l  +g+         +el  rl  ++++tv+++++d+g   E Yd ++ a
  CCE28579.1 691 LADEEHLWSAHGIRSLSKQdplygTGeNYWRSP-IWMPMNYMALKQLLVLGKqpgpyreraRELYTRLRGNLVETVYRSWEDTGFAWEQYDPETGA 785
                 888888888777666554444456551569998.5****************999999555555555666678*******************88644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5796.44
//
Query:       CCE28580.1  [L=635]
Description: related to GTPase MSS1, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-36  125.4   0.0    3.1e-36  124.2   0.0    1.7  1  TrmE_N        GTP-binding protein TrmE N-terminus
    2.8e-34  119.1   0.2    3.6e-34  118.8   0.2    1.1  1  MnmE_helical  MnmE helical domain
    1.1e-19   70.6   0.0    1.8e-19   69.9   0.0    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
    8.2e-06   25.4   0.0    1.4e-05   24.7   0.0    1.4  1  FeoB_N        Ferrous iron transport protein B
    0.00018   21.6   0.0    0.00033   20.8   0.0    1.4  1  Dynamin_N     Dynamin family
     0.0065   16.2   0.1      0.025   14.3   0.0    1.9  2  AAA_24        AAA domain
  ------ inclusion threshold ------
      0.017   14.4   0.0      0.027   13.8   0.0    1.3  1  AIG1          AIG1 family
      0.019   14.8   0.0      0.078   12.9   0.0    1.9  2  RsgA_GTPase   RsgA GTPase
      0.021   15.3   0.0      0.053   14.0   0.0    1.7  1  ABC_tran      ABC transporter
       0.23   11.7   0.0       0.59   10.4   0.0    1.7  2  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.24   10.2   0.0        1.2    7.9   0.0    1.9  2  AAA_35        AAA-like domain


Domain annotation for each model (and alignments):
>> TrmE_N  GTP-binding protein TrmE N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   0.0   1.9e-39   3.1e-36       1     115 []     118     245 ..     118     245 .. 0.92

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 1.9e-39
                 -EEEE-S-SSS-SEEEEEEESTTHHHHHHTTEEE..T--CTEEEEEEEECT........TCEEE.EEEEEEEBTTCSTTSSEEEEEEEESSHHHHHHHH CS
      TrmE_N   1 TIaAlatpagkgaiaiiRvsGpkaleiakklfkk..elkprkallgklvdee......ekevlD.evlvlvfkaprsyTgedvvElhlhGgpavvkavl 90 
                 TI+Al+t++g+++ia+iR+sGp++l+i+++l+     +kpr+a++++l++++      + ++lD e l+l+f++pr++Tgedv+Elh+hGgpa+vkavl
  CCE28580.1 118 TIYALSTGQGRAGIAVIRISGPSCLQIYHALCPDtqPPKPRRATVRTLFHPKsppcspAPDILDsESLILYFPNPRTVTGEDVLELHVHGGPATVKAVL 216
                 9*****************************9776555679********99999999998889**99********************************* PP

                 HHHHCT....T-EE--CTHHHHHHHHTTS CS
      TrmE_N  91 eallka....garlAepGEFtkRaflngk 115
                 +a+++      +r+AepGEFtkRaf+n++
  CCE28580.1 217 SAIAQCpttsPTRYAEPGEFTKRAFMNDR 245
                 ***544555468***************98 PP

>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8   0.2   2.2e-37   3.6e-34       1     206 []     248     632 ..     248     632 .. 0.84

  Alignments for each domain:
  == domain 1  score: 118.8 bits;  conditional E-value: 2.2e-37
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical   1 LtqaEavadlIdAeteaaakaalrqleGelskkikelrekllellaeleaaiDFpeed.leelsee...elaekleelkeelekllatakrgellre 93 
                   L+q+E+++d  dAete++++aa+r  +G+l + ++++rekll+++ elea iDF+e++  +e ++e   ++a++++ + ++++ +    +r+ellr+
    CCE28580.1 248 LAQIESLSDALDAETEQQRRAAVRGNSGALGRTYDDWREKLLQARGELEALIDFSEDQhFDESQSEllgNVARQVSLILDRMHLHEMGGQRSELLRN 344
                   89******************************************************6546776666999**************************** PP

                   xxx.............................................................................................. RF
  MnmE_helical  94 Gik.............................................................................................. 96 
                   Gi+                                                                                              
    CCE28580.1 345 GIRialvgppnvgksslmnmivgreasivsgeagttrdiveasldirgylcsfadtagfrtsgqdvgaveeegirrarkralesdlvvvlasverss 441
                   ************************************************************************************************* PP

                   .......................................................................xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical  97 .......................................................................DllkekeekeeeevlkiSaktgegie 122
                                                                                          D        + +++ ++   +++g++
    CCE28580.1 442 shdaggdgaycihfdqetldlaagaqrailvvnkrdavdpdtfsalldqfrrfvrnvhpqlasslitmsckD--------DADPTAALVL-KDNGLQ 529
                   **************9999988888888888888887776666665554444444444443333333333331........2222233334.447888 PP

                   xxxxxxxx.xx.xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxx..xxxxxxxxxxxxxxxxx...xxxxxxxxx RF
  MnmE_helical 123 eLeeaike.le.leei...eeeplltnaRhkealekalealeeakealeagl.........pldlv..aedLrealeaLgeItGe...vvtedlLde 200
                   +  ea+++ +  ++++    ++ l + +R++++l+k+   le+   + + g          + d+v  ae+Lr a++ L +ItG+    ++ed+L+ 
    CCE28580.1 530 TVVEALTTaFAdMTDMppsMQDLLGVTERQRQLLSKCRVYLEDFMAESQLGAgsdgdvtgdDADIVvaAEHLRYAANCLARITGRgegGDVEDVLGV 626
                   888888885554444455434699*****************776655544423356677777777789****************9655589****** PP

                   xxxxxx RF
  MnmE_helical 201 IFskFC 206
                   +F+kFC
    CCE28580.1 627 VFEKFC 632
                   ****** PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   1.1e-22   1.8e-19       1     114 []     347     475 ..     347     475 .. 0.76

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 1.1e-22
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS......HHHHHHHHHHHHHHHHCTSEEEEEEETT...... CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGlie......gaseekglgkaflaleeadlillvvdas...... 86 
                 ++a+vG pNvGKS+L+n ++g+ ++ivs ++gtTrdi+e+ ++++g  + ++Dt+G +       ga ee+g+++a ++  e+dl++++ +++      
  CCE28580.1 347 RIALVGPPNVGKSSLMNMIVGReASIVSGEAGTTRDIVEASLDIRGYLCSFADTAG-FRtsgqdvGAVEEEGIRRARKRALESDLVVVLASVErssshd 444
                 69*******************9678*******************************.52234456889999*****************99866666555 PP

                 ........TTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  87 ........eeklkpldeeleelleeakkplilvlnk 114
                           +++++  +l++      ++ ilv+nk
  CCE28580.1 445 aggdgaycI-HFDQETLDLAAGA----QRAILVVNK 475
                 444332211.2333333333333....456677776 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   8.6e-09   1.4e-05       1      57 [.     346     403 ..     346     439 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 8.6e-09
                 EEEEEEESTTSSHHHHHHHHHTTSEE.EEESTTSSSEEEEEEEEETTEEEEEEE---- CS
      FeoB_N   1 itvalvGnpnvGkttlfnaltgakqk.vgNwpGvtvekkegklklkgkeveivDlPGi 57 
                 i++alvG pnvGk++l+n + g + + v+  +G+t +  e++l+++g+ +++ D  G 
  CCE28580.1 346 IRIALVGPPNVGKSSLMNMIVGREASiVSGEAGTTRDIVEASLDIRGYLCSFADTAGF 403
                 579*******************9865278899************99999999999886 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     2e-07   0.00033       1      40 [.     348     388 ..     348     446 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2e-07
                 EEEEEBTTTTHHHHHHHHHTS--S-.--SSS---S-EEEEE CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilp.rgpnptTrrplelql 40 
                 ia+vG  + GKSS++n ++g++    +g+  tTr ++e +l
  CCE28580.1 348 IALVGPPNVGKSSLMNMIVGREASIvSGEAGTTRDIVEASL 388
                 89*******************99884777799999998777 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3   2.2e+03      74     120 ..     251     297 ..     248     300 .. 0.78
   2 !   14.3   0.0   1.5e-05     0.025       2      47 ..     345     391 ..     344     415 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
      AAA_24  74 ideleelclaevirqnekaeskedkgdgkGygelaeefrrllkklqe 120
                 i+ l +  +ae+ +q ++a   +++  g+ y++++e++ ++   l++
  CCE28580.1 251 IESLSDALDAETEQQRRAAVRGNSGALGRTYDDWREKLLQARGELEA 297
                 56677778899999999987778899999999999999887666655 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.5e-05
      AAA_24   2 klkiliyGpsgiGKTtlakel.gpkplfidtekGlksldadkfpdie 47 
                 +++i+++Gp+ +GK++l++++ g ++ ++  e+G+ +  +    di+
  CCE28580.1 345 GIRIALVGPPNVGKSSLMNMIvGREASIVSGEAGTTRDIVEASLDIR 391
                 689*******************************9876666555555 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.7e-05     0.027       2     114 ..     347     458 ..     346     515 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.7e-05
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETTB-SHHH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslgrfteed 100
                 +i lvG   +GkS+  N i+g++a   +  +++ t+   ++s   +g   +  DT g   + ++  ++++e +r+    +   + +++  s++r +++d
  CCE28580.1 347 RIALVGPPNVGKSSLMNMIVGREASIVS-GEAGTTRDIVEASLDIRGYLCSFADTAGFRTSGQDVGAVEEEGIRRARKRALESDLVVVLASVERSSSHD 444
                 899*********************8877.48999***********************988888888899998888888888888888888999988888 PP

                 HHHHHHHHHHHCGG CS
        AIG1 101 ekalktlkelFGek 114
                      +    F+++
  CCE28580.1 445 AGGDGAYCIHFDQE 458
                 76555555555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.8e-05     0.078      96     130 ..     341     373 ..     299     408 .. 0.72
   2 ?   -1.7   0.0       1.4   2.3e+03      48      74 ..     468     493 ..     462     509 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.8e-05
                  HCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  96 llkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  ll++   ++lvG+  vGKS+L+n++++++    + v
   CCE28580.1 341 LLRNgIRIALVGPPNVGKSSLMNMIVGREA---SIV 373
                  5555345789****************9843...333 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
                  EEEEEEE-GGG--HHHHHHHHHHHHHH CS
  RsgA_GTPase  48 epvivlnKiDlleeeeeleelkeelea 74 
                  + ++v+nK D ++ ++ +++l +++++
   CCE28580.1 468 RAILVVNKRDAVDPDT-FSALLDQFRR 493
                  56899******99998.7776666665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.2e-05     0.053       8      37 ..     342     371 ..     338     428 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.2e-05
                 EETTSEEEEEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkp 37 
                 l++g ++a+vG+   GKS+L++++ g +  
  CCE28580.1 342 LRNGIRIALVGPPNVGKSSLMNMIVGREAS 371
                 567899*******************98765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00036      0.59       1      24 [.     347     370 ..     347     402 .. 0.86
   2 ?   -3.2   0.0       5.9   9.6e+03     106     119 ..     464     477 ..     458     478 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
                 EEEEESSTTSSHHHHHHCHCT-CC CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkf 24 
                 ++ lvG  +vGK+sl++ +v ++ 
  CCE28580.1 347 RIALVGPPNVGKSSLMNMIVGREA 370
                 589**************9987665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.9
                 CSSS-EEEEEE-TT CS
         Roc 106 agkspvilvgnkiD 119
                 ag + +ilv+nk D
  CCE28580.1 464 AGAQRAILVVNKRD 477
                 66778999999998 PP

>> AAA_35  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.4   6.5e+02     155     183 ..      74     102 ..      65     118 .. 0.87
   2 ?    7.9   0.0   0.00072       1.2      25      54 ..     339     368 ..     317     376 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.4
      AAA_35 155 swheeaknkeiwqkLrLvvvhstevyipl 183
                 sw+e+a +++  + LrL  v s    ip 
  CCE28580.1  74 SWCEKAWREQSCRALRLHYVRSFSLAIPC 102
                 7*******************998887775 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00072
      AAA_35  25 eeiekpGalirikapkkmGKtSLlarilak 54 
                 +e+ ++G  i + +p ++GK+SL++ i+ +
  CCE28580.1 339 SELLRNGIRIALVGPPNVGKSSLMNMIVGR 368
                 68999********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4615.50
//
Query:       CCE28581.1  [L=249]
Description: probable proteasome component C2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-45  153.5   0.1    5.8e-45  153.1   0.1    1.2  1  Proteasome      Proteasome subunit
    4.4e-11   42.2   0.2    7.3e-11   41.5   0.2    1.4  1  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   0.1   6.5e-49   5.8e-45      13     187 ..      30     200 ..      18     203 .. 0.92

  Alignments for each domain:
  == domain 1  score: 153.1 bits;  conditional E-value: 6.5e-49
                 TTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTTTTTSEEEEEE CS
  Proteasome  13 kdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgrrpfgvsllia 111
                 k g v+++  r+    +l s+ + +K+f id+h g+a+aGl++Dar+l++++++++  +rl+ygr ipv+rlv  +a+k+q +tq +g+rp+gv+ll+a
  CCE28581.1  30 KQGSVVVGI-RNA--EEL-SSYQ-KKLFSIDEHAGIAIAGLTSDARVLCNFMKQQCLGHRLTYGRAIPVRRLVGLIASKAQTNTQVYGKRPYGVGLLVA 123
                 667777775.444..466.8997.*************************************************************************** PP

                 EEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHH..STTBSHHHHHHHHHHHHHHHH.HHBTTSCSSEEE CS
  Proteasome 112 gvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekey..kedltleeavelavkalkeal.erdklsgkniev 187
                 gvde+g p+L++++psG + e  +a+aiG +s++a+t+le+++  + d+++ee+v++ +kal+e+l ++ +l+ +n +v
  CCE28581.1 124 GVDETG-PHLFEFQPSGMIEEM-NAFAIGARSQMARTYLERNVdaFADCSREELVKHGLKALRESLvQDKELTVENTSV 200
                 ***999.***************.7***************************************9994555677777766 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.2   8.1e-15   7.3e-11       1      23 []       6      28 ..       6      28 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 8.1e-15
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YD++  tFSP+GR+fQ+EYA +A
      CCE28581.1  6 YDNDSVTFSPQGRIFQIEYAAEA 28
                    9*******************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1777.15
//
Query:       CCE28582.1  [L=240]
Description: uncharacterized protein CPUR_02269 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-28   98.4   0.1    4.7e-28   97.9   0.1    1.2  1  Lysine_decarbox  Possible lysine decarboxylase
    2.2e-06   27.3   4.7    7.9e-06   25.5   4.7    1.9  1  LDcluster4       SLOG cluster4 family


Domain annotation for each model (and alignments):
>> Lysine_decarbox  Possible lysine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.1   5.2e-32   4.7e-28       1     131 [.      70     222 ..      70     223 .. 0.92

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 5.2e-32
                      HHHHHHHHHHTTS-..EEEEEECCHHHHHCC...............TTT-SEEEEESSHHHHHHHHHHH......ESEEEE-S-SHHHHHHHHH CS
  Lysine_decarbox   1 meavakgaleaggr..viGiipkillaeeap...............neevnelvivedmeeRkealvel......adafvilPGGiGTleElle 71 
                      m+ va+ +   +g+  v+Giip++l++ e+                ++ ++++++v+dm++Rk++++e+      + +f+ l GG+GT+eE++e
       CCE28582.1  70 MGEVARTVCSINGPesVHGIIPEALVRYERDgtyqtvkdnkqvvptETVYGRTTVVKDMHTRKKMMAEEvisggpGSGFIGLSGGYGTMEEVFE 163
                      8889999997777777***********77677999999999999988889999**************9855555579***************** PP

                      HHHHHHTTSS-S.EEEEEEGGGCCHHHHHHHHHHHHTTSS-GGGGGCEEEESSHHHHHHH CS
  Lysine_decarbox  72 iltliqlgkhqkvPiillnpkgyydkllefletlveegtisekareliivvddpeevlek 131
                      ++t+ qlg+h+k  i lln++gy+d +l++++ +  +g++++ +  +++++ d+e ++++
       CCE28582.1 164 VITWNQLGIHTK-GICLLNVEGYWDGILQWINMAAAQGFVQPGNETIVVSAGDAEGAVRA 222
                      ************.******************************************99986 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   4.7   8.8e-10   7.9e-06       2      66 ..      26      93 ..      25     176 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 8.8e-10
  LDcluster4  2 lkigVmGsaeteakeealelaeelGrliAkegavlltGgrt.GvmeaaskGakeagG..ltvGilpas 66
                 ki+V+  ++ +a++ ++e a++lGr++A++++ l+ Gg t G+m  +++ + + +G   + Gi+p++
  CCE28582.1 26 AKICVFCGSSGGASPAHMEAARQLGRVMAENNIDLVYGGGTvGLMGEVARTVCSINGpeSVHGIIPEA 93
                58999866665699999**********************999*********99999844466888873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1674.74
//
Query:       CCE28583.1  [L=667]
Description: related to cleft lip and palate transmembrane protein 1 (CLPTM1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.6e-148  494.1   0.0   4.6e-148  493.8   0.0    1.1  1  CLPTM1          Cleft lip and palate transmembrane protein 1 
      0.005   16.9   2.8       0.76    9.8   0.2    2.5  2  DUF1453         Protein of unknown function (DUF1453)
  ------ inclusion threshold ------
      0.046   13.3   3.3       0.42   10.2   0.6    2.2  2  Virul_fac_BrkB  Virulence factor BrkB


Domain annotation for each model (and alignments):
>> CLPTM1  Cleft lip and palate transmembrane protein 1 (CLPTM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  493.8   0.0  7.6e-152  4.6e-148      28     429 .]      91     521 ..      41     521 .. 0.94

  Alignments for each domain:
  == domain 1  score: 493.8 bits;  conditional E-value: 7.6e-152
      CLPTM1  28 ceeepseestpkclapllkegekldlsvyvseseefekl.kse.eklvlkeknlkygdweesreveltiklpkevqnNgtlyahvfltksgssldpkde 124
                 ++e  + +++p ++ap++++++++d+ v++s+s +  ++ +++ e lvl+ek++++g+ +e+r +++++++pk+vqnNgtl+ h+++ ++gs ldp d+
  CCE28583.1  91 LDEGAQYHQIPLKIAPIWPQDSHVDIIVTISPSFNPVPIpETPsEYLVLHEKDFNMGNSSEKRAIDTKFTVPKAVQNNGTLWGHFYVGLTGSILDPYDS 189
                 344444555999*******************88887777744469****************************************************** PP

      CLPTM1 125 kydkksvvhktkqLtkylpkkkekktknLlkekeeeeeee....ekeekpvivsywkpnltlslvsdktalskeqlppevaeyikleetg........g 211
                  y++ +++h++++Lt+ylpkkk++kt+nLl+  + +ee++    e +++p+i s+++pn ++s+v+  ++ + +q++p+v++y++le+tg        g
  CCE28583.1 190 GYQTGKAFHFAYPLTQYLPKKKVAKTRNLLDARTGTEETQaeeeEVPSGPIINSHYHPNSSFSFVPAMGVKDFSQIHPAVKHYLRLEATGardgsgqnG 288
                 *******************************99887777755556777788************************************************ PP

      CLPTM1 212 qYlPilfvnefwqlkkdlveinetvkelpLtitlsplslwklqlyasmeeslkqqakl.........gfsekeideiKeilldtnpyLLalTivVsllH 301
                 +Y+P+lf+n+fwql+++++ +netv+elpL+i+l+++++wk++ +as++ ++k++a+          g++++ei+++Ke+l+dtnp+LL++Ti+V++ H
  CCE28583.1 289 WYYPLLFINKFWQLNSHMIVLNETVTELPLHIDLTNMAMWKFSTIASIDLNSKENARKaafgqslptGGDGSEIEMVKEVLIDTNPILLGITIFVTIAH 387
                 *******************************************************99999*************************************** PP

      CLPTM1 302 svfefLAFknDisfWrkkksleGlSvrsilanvfsqlvifLYLlDn..eTSwlilisqgiGllielWKitkvvkvrlse..egs.lp.rlkfedkekls 394
                 +++e+LAF +Di+++rkkk+++G+Svrsilanvf+q++ifLYLlDn  +TSw+il sq++G++ie+WK+t+vv+vrl++  +gs +p ++ fedk+kl+
  CCE28583.1 388 LILETLAFGSDIAHYRKKKDNVGISVRSILANVFMQTIIFLYLLDNsqNTSWIILGSQVVGIVIEFWKVTTVVDVRLRPspPGStFPyTIVFEDKHKLT 486
                 ******************************************************************************988777899************ PP

      CLPTM1 395 esekkTkeYDeiAfkYLsyvlvPlligyaiYSLlY 429
                 e+e+kTkeYDe AfkY+++v+vPlli+y +YSL+Y
  CCE28583.1 487 ETEEKTKEYDETAFKYMYIVAVPLLIAYGVYSLVY 521
                 **********************************9 PP

>> DUF1453  Protein of unknown function (DUF1453)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.2     0.001       6.1      17      69 ..     402     453 ..     381     464 .. 0.76
   2 !    9.8   0.2   0.00013      0.76      30      72 ..     504     545 ..     491     573 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.001
     DUF1453  17 irikaskrpveak.kiilPplfmstGalmfvfpefrltllevleallvGalfsi 69 
                  r  ++k  v    + il  +fm t ++++++++ + t + +l + +vG+++ +
  CCE28583.1 402 YR--KKKDNVGISvRSILANVFMQTIIFLYLLDNSQNTSWIILGSQVVGIVIEF 453
                 34..44444444445677899****************************98755 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00013
     DUF1453  30 kiilPplfmstGalmfvfpefrltllevleallvGalfsipli 72 
                  i+ +pl ++ G++ +v++ ++ ++  +++a lvG + ++  +
  CCE28583.1 504 YIVAVPLLIAYGVYSLVYE-THKSWYSFIIATLVGSVYAYGFL 545
                 7999************999.679*************9998544 PP

>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6     7e-05      0.42     124     208 ..     375     456 ..     366     462 .. 0.67
   2 ?    3.2   0.1    0.0092        55     163     215 ..     501     554 ..     479     562 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7e-05
  Virul_fac_BrkB 124 vllllslvlsvflqslllasa.....pllglglelsell...llqllrwlvallllvlafallYrvlpnvkvrlraalpGallaallwllvki 208
                     +ll+++++++++  + l+ +a     +++         +       +++  ++l +v++ ++++ +l +  ++ +++++G+ ++++++++ k+
      CCE28583.1 375 ILLGITIFVTIAHLI-LETLAfgsdiAHY---------RkkkDNVGISV-RSILANVFMQTIIFLYLLDNSQNTSWIILGSQVVGIVIEFWKV 456
                     455555554444433.2222223222222.........22222334444.5677999*******************************99876 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0092
  Virul_fac_BrkB 163 rwlvallllvlafallYrvlpnvkvrlraalpGallaallwllvkil.fslyls 215
                     +++ ++++ +l+ + +Y ++  +++++ ++++++l++++  +++     sly++
      CCE28583.1 501 KYMYIVAVPLLIAYGVYSLVYETHKSWYSFIIATLVGSVYAYGFLMMvPSLYIN 554
                     4545667778999***********************998766554431446665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4748.99
//
Query:       CCE28584.1  [L=29]
Description: uncharacterized protein CPUR_02271 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (29 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       135  (0.0075297); expected 358.6 (0.02)
Passed bias filter:                      122  (0.00680462); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 232.34
//
Query:       CCE28585.1  [L=249]
Description: related to S.pombe pac2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-49  168.0   0.1    2.1e-37  128.9   0.0    2.2  2  Gti1_Pac2  Gti1/Pac2 family


Domain annotation for each model (and alignments):
>> Gti1_Pac2  Gti1/Pac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   0.0   1.2e-41   2.1e-37       1      98 [.      13     111 ..      13     123 .. 0.84
   2 !   37.4   0.0   1.5e-13   2.7e-09     142     181 .]     121     160 ..     113     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 1.2e-41
                 SEES---SHHHHHHHHHHHHTTSS---SS---HHHHHHHSSTTEEEEEEHHHH--SS---S--B---EEETTEEEEEB------.-------------- CS
   Gti1_Pac2   1 tfkgyiettkdalllieavlegilkrvtrRlkekErkeliksGsvFvfeeeesgikRWTDGvsWSpSrilgnfLvYreldkkra.kkkkkkkkkkskes 98 
                 +++gyi++t+dal++iea l gi++ ++rR++ +E ++liksGsv +fee++sgikRWTDG++W+pSr+lgnfL+Yreld  ++  +k+++k ++s++s
  CCE28585.1  13 SWQGYIASTTDALVIIEAYLLGIVNGIPRRPRYAEHHSLIKSGSVVIFEERSSGIKRWTDGLKWGPSRVLGNFLIYRELDDASNpIRKSTAKPRTSSRS 111
                 59*****************************************************************************66544044444444443333 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 1.5e-13
                 -------------------EEEEEEEEEETTTEEEEEEE- CS
   Gti1_Pac2 142 erslvgsltdsykfkkdgLvKkTisvtlkgkelhlisYyk 181
                   +++gs+ d y+fk+dgLvKkTisv++++++lhl+sY++
  CCE28585.1 121 AANVAGSFGDWYQFKQDGLVKKTISVSVQERTLHLVSYFT 160
                 45677799999***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1886.83
//
Query:       CCE28586.1  [L=485]
Description: uncharacterized protein CPUR_02273 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3902.59
//
Query:       CCE28587.1  [L=641]
Description: related to sodium-and chloride-dependent GABA transporter 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-73  247.2  38.4    7.2e-72  242.8  38.4    2.1  1  SNF       Sodium:neurotransmitter symporter family
  ------ inclusion threshold ------
       0.15   12.4   1.3       0.24   11.8   0.2    1.8  2  DUF4124   Domain of unknown function (DUF4124)


Domain annotation for each model (and alignments):
>> SNF  Sodium:neurotransmitter symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.8  38.4     8e-76   7.2e-72       1     459 [.      23     460 ..      23     482 .. 0.90

  Alignments for each domain:
  == domain 1  score: 242.8 bits;  conditional E-value: 8e-76
         SNF   1 RetwskkldfilsvvGfavgLgnvWRFPYlcyknGGGafliPYlilllvaGiPlfflelalGqytreGaitvwrkicPllkgiGyasivvalyvglyYn 99 
                 R++w ++ +f+++++  + g+gn+ R+P  +++n G  ++iPYl+ ++++ iP++ lela+Gq +r G++ + + i  +lkg+G++ + v ++++ y++
  CCE28587.1  23 RDQWRSRTAFLIAAMAGCAGMGNLLRYPSQVFNNHGLQWFIPYLLCVILIAIPVLLLELAIGQAYRGGCVVTNNAIHYRLKGLGLSLLYVGFVISPYFV 121
                 89************************************************************************************************* PP

         SNF 100 vilawalfYlfssftteLpWaeCsnswntpeCvealakenlsaassenltekssaaeefwerevlklsssieelGelrweltlcllvawvvvylailkG 198
                 v law + ++  sf+++LpW+  ++++  ++ v +++           l+e  s++  +         +s   +G++    +   + +wv+v  +i++G
  CCE28587.1 122 VNLAWVMRFFRGSFQKPLPWEGRGEAFFYEDVVANVEPVPG------LLSEDGSKVLAY---------TSYPGVGMIAE-TVGWTMFTWVLVWASIFRG 204
                 *********************99999999999664443333......345555666655.........34555666654.44555678*********** PP

         SNF 199 vkssgkvvyftatfPyvvllvllvrgvlLpGavkgikfy.ltpdlekllepkvWidaatqiffslgigfGvlialasYnkfennvyrdallvslinslt 296
                 v  + +v+yft  +  v+ ++l+ r++ L+ a++g+k +  t d ++l + ++W+ a  q+ffs g+gfG++++ asYnk+ +n  +d++l+   n+l+
  CCE28587.1 205 VGVTERVIYFTMGLSIVMTIILVGRSLSLEDASRGVKLFwATWDSKNLASGEMWQTACGQVFFSTGVGFGCFTSCASYNKKYSNAVMDSILIVASNVLF 303
                 ************************************9651678999***************************************************** PP

         SNF 297 svlaglvvFsvlGfmaeeqgekisevaeeGpgLaFiaypealtklplsplwsvlFFlmlillgldsqfgtvegiitavvDefkvllrrrelltlivavl 395
                 + +a+++v+ v+Gf+  + + +   v     ++ Fi+ p a++++p +++w+vl Fl l+++g  s+f++v++iit ++D  ++   +r+++++ v+++
  CCE28587.1 304 ENFAAFAVYGVIGFLGLSPKDD---VRLGSFTVGFITLPSAVAQMPGANFWAVLLFLTLMIMGYSSAFAMVDAIITLIMDVQPR--WSRTIVVTGVVAV 397
                 ***************9988765...566778999**********************************************9999..689999******* PP

         SNF 396 aflvglllvtegGiyvltlldkyaaslsllvvvlleaiavawvyglkkflddikemlgfrpllf 459
                  fl++l ++t  G y+lt +d++ + ++l++vvl+e+ a + vy  +  + ++  +++f +++f
  CCE28587.1 398 FFLLSLPYCTVFGYYLLTAVDRWINDVALVFVVLAECAASTTVYRWRDVVGQVG-LTAFTVYNF 460
                 ********************************************9998888774.445555555 PP

>> DUF4124  Domain of unknown function (DUF4124)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         1     9e+03      17      27 ..     258     268 ..     257     269 .. 0.90
   2 ?   11.8   0.2   2.6e-05      0.24       4      24 ..     430     450 ..     426     453 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1
     DUF4124  17 WvDanGvvhys 27 
                 W  a G+v +s
  CCE28587.1 258 WQTACGQVFFS 268
                 99999****99 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.6e-05
     DUF4124   4 llaasaaaaevYkWvDanGvv 24 
                 +la  aa+ +vY+W+D  G+v
  CCE28587.1 430 VLAECAASTTVYRWRDVVGQV 450
                 455589**********99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 5105.13
//
Query:       CCE28588.1  [L=1364]
Description: uncharacterized protein CPUR_02275 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-70  236.5   8.1    3.1e-68  228.8   0.0    5.3  6  TIP120          TATA-binding protein interacting (TIP20)
    5.8e-16   58.7  21.8       0.21   12.0   1.6    9.8  9  HEAT_2          HEAT repeats
    3.5e-14   52.2  17.1    1.5e-05   23.8   0.5    7.0  6  Adaptin_N       Adaptin N terminal region
    6.1e-14   50.9  15.2       0.38   11.1   0.1   11.9 12  HEAT            HEAT repeat
    8.7e-10   38.9  17.9     0.0047   17.0   0.1    6.6  7  Cnd1            non-SMC mitotic condensation complex subunit 
    6.6e-09   35.9   6.3     0.0035   17.5   0.1    5.7  5  RTP1_C1         Required for nuclear transport of RNA pol II 
    2.3e-06   28.0  12.9         50    4.5   0.0   11.8 12  HEAT_EZ         HEAT-like repeat
      1e-05   26.0   1.0        2.3    8.9   0.0    6.1  5  Vac14_Fab1_bd   Vacuolar 14 Fab1-binding region
    7.7e-05   21.9   5.8        1.7    7.7   0.0    5.6  5  IFRD            Interferon-related developmental regulator (I
    0.00036   20.4   2.2       0.93    9.4   0.0    5.8  7  UME             UME (NUC010) domain
    0.00046   19.8   3.1       0.18   11.3   0.3    3.6  3  Tti2            Tti2 family
      0.001   19.2   2.8        2.9    8.0   0.0    5.1  4  V-ATPase_H_C    V-ATPase subunit H
     0.0014   18.5   0.4        1.2    9.0   0.0    3.3  3  VHS             VHS domain
      0.006   16.2   5.0        2.1    7.9   0.0    4.7  6  CLASP_N         CLASP N terminal
  ------ inclusion threshold ------
      0.048   12.8  14.5      0.044   12.9   0.3    4.9  5  MMS19_C         RNAPII transcription regulator C-terminal
      0.085   12.9   0.1        0.8    9.7   0.0    2.7  2  GhoS            Endoribonuclease GhoS
       0.12   10.7   0.5       0.79    8.0   0.0    2.5  3  SMG1            Serine/threonine-protein kinase smg-1
       0.16   11.9   8.9        5.5    6.9   0.1    4.8  4  DUF3361         Domain of unknown function (DUF3361)
       0.17   12.3   3.8        6.5    7.2   0.0    4.7  3  RasGEF_N_2      Rapamycin-insensitive companion of mTOR RasGE
          2    8.5   6.0         12    5.9   0.0    3.1  2  TTRAP           Putative tranposon-transfer assisting protein
        5.9    5.3   8.7        5.1    5.5   0.1    3.8  5  Proteasom_PSMB  Proteasome non-ATPase 26S subunit


Domain annotation for each model (and alignments):
>> TIP120  TATA-binding protein interacting (TIP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.056        48      64     106 ..      54      97 ..      25     114 .. 0.79
   2 ?   -1.9   0.2       2.9   2.5e+03      59     117 ..     203     261 ..     186     272 .. 0.73
   3 ?   -2.6   0.0       4.6   3.9e+03      38      56 ..     406     424 ..     404     446 .. 0.82
   4 ?    3.1   0.0     0.085        73      78     109 ..    1070    1101 ..    1040    1114 .. 0.88
   5 ?    1.5   0.1      0.26   2.2e+02      56      98 ..    1123    1166 ..    1111    1168 .. 0.85
   6 !  228.8   0.0   3.6e-71   3.1e-68       1     168 []    1166    1342 ..    1166    1342 .. 0.99

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.056
      TIP120  64 selldrvlaGlsDe.hdikllcnlmlsklvalapeevlerldel 106
                    +d +++ l+D+  +++ l+  +l  lv+  p++++++l + 
  CCE28588.1  54 ARAVDGIIKTLDDQnGEVQNLAIKCLGPLVSKLPTSTIASLVDK 97 
                 456778********99****************999988875433 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.9
      TIP120  59 drldlselldrvlaGlsDehdikllcnlmlsklvalapeevlerldelvealrktlskk 117
                 +++++++l + v++ l+ ++   ++    ++ +  la   + e+lde+++ l++ l+ +
  CCE28588.1 203 QSIEVEALQQVVMQLLESKKGTSVVKKRAVVAISMLAIYLTDEHLDEVIQRLTSRLADT 261
                 56677777777777777777777777777888888888888899999999998888754 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.6
      TIP120  38 dGLelRKaaYetlytllet 56 
                  +  +R+ a  tlytl++t
  CCE28588.1 406 ASWKVRRCAAKTLYTLIST 424
                 56689************98 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.085
      TIP120   78 hdikllcnlmlsklvalapeevlerldelvea 109 
                   d +++c  ++ +lv+l+p+++l +l+++ ++
  CCE28588.1 1070 ADNRVVCAECVGRLVTLDPTAFLPKLQSVLKN 1101
                  67799********************9998765 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.26
      TIP120   56 taldrldlselldrvlaGlsDe.hdikllcnlmlsklvalapee 98  
                   a+d++  ++l++ +l+ l+D  ++i+ l++++l  +++ +p+ 
  CCE28588.1 1123 EAFDAMLKTTLISMLLTMLQDAdTEIRRLAMTTLNSAAHNKPDL 1166
                  38888899999999*******99*************99999986 PP

  == domain 6  score: 228.8 bits;  conditional E-value: 3.6e-71
      TIP120    1 lilpllsqllplvyketkvkkelireVqmGPFkhkvDdGLelRKaaYetlytlletaldrldlselldrvlaGlsDehdikllcnlmlsklvalape 97  
                  lilp+l +l+p v++e+++k+eli+eV++GPFkh+vDdGLe+RK+aYetly+l+eta+ r++ ++++dr++aGl+D++di+ lcnlm+skl++++p+
  CCE28588.1 1166 LILPHLGELMPFVLTESVIKPELIKEVMLGPFKHMVDDGLEVRKSAYETLYALMETAFTRINHIDFFDRIIAGLRDDNDIRQLCNLMVSKLIVIDPD 1262
                  799********************************************************************************************** PP

      TIP120   98 evlerldelvealrktlskklkekavkqelEkqeelkrsvlrvvaalnsklesaev.........akssskwtefveevk 168 
                  e+ +rld+++ea++++ls klk++avkq++Ekqee+++svlr+++ l +k++s++          a+++ +wt+++e+v+
  CCE28588.1 1263 ETFRRLDSIAEAYKAVLSVKLKDNAVKQDVEKQEEANKSVLRITLLLGDKMKSMTGnagavignaAGAAGVWTSYWEWVN 1342
                  ****************************************************999999******988889********96 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00027      0.23       2      58 ..      13      82 ..      12     102 .. 0.77
   2 !    7.7   0.1    0.0055       4.7      13      82 ..     187     269 ..     180     275 .. 0.78
   3 !    8.9   0.0    0.0022       1.9      11      56 ..     405     464 ..     403     487 .. 0.69
   4 !   12.0   1.6   0.00024      0.21       9      60 ..     706     771 ..     695     811 .. 0.72
   5 ?   -0.9   0.1       2.6   2.2e+03      31      75 ..     830     882 ..     790     895 .. 0.57
   6 ?    0.1   0.0       1.2     1e+03      31      74 ..     869     913 ..     832     917 .. 0.63
   7 ?    3.4   0.0      0.12        99      10      36 ..     991    1017 ..     942    1032 .. 0.68
   8 !   10.9   0.0   0.00054      0.46       6      55 ..    1062    1114 ..    1057    1131 .. 0.78
   9 !    8.3   0.1    0.0035         3      30      70 ..    1131    1174 ..    1123    1177 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00027
      HEAT_2  2 daLlqalendpdpevrraairaLg...rignp...........ealpaLvellededpavRraaaeaLgai 58
                +aL+q l  d+dp+ r + +  L    + + p           +a++ +++ l+d++ +v+  a++ Lg +
  CCE28588.1 13 SALVQKL-GDSDPDFRFMSLNDLLqllQSAKPdilhhdyntaaRAVDGIIKTLDDQNGEVQNLAIKCLGPL 82
                689****.**********999998555333347888888888899***********************954 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0055
      HEAT_2  13 dpevrraairaLg....rignpealpaLvelleded..pavRraaaeaLgaig.......dpealpaLkellddddddvvRea 82 
                   +v ++++r+ g    +i  + +++ + +lle+++  + v + a+ a++ ++       ++e+++ L+ +l+d++ + v ++
  CCE28588.1 187 AVDVLIEVVRCFGpllqSIEVEALQQVVMQLLESKKgtSVVKKRAVVAISMLAiyltdehLDEVIQRLTSRLADTNTSAVTRR 269
                 5678888888888877677888999*******98876689*******9997744454444699***********998777665 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0022
      HEAT_2  11 dpdpevrraairaLgrignp..............ealpaLvellededpavRraaaeaLg 56 
                 d++++vrr a+++L ++ ++              +a p Lv+  +  +++vR +++ aL+
  CCE28588.1 405 DASWKVRRCAAKTLYTLISTrgsgdllengvlykQAAPSLVKRFNEREENVRLEVISALS 464
                 677777777777777443333445556666666677777777777777777777777776 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 0.00024
      HEAT_2   9 endpdpevrraairaLg................rignpealpaLvellededpavRraaaeaLgaigd 60 
                 +nd+d evr++ai+aLg                + + ++ l++L+e l   ++ +R aa++a   +++
  CCE28588.1 706 ANDADAEVRQKAIHALGifisralaelsgrssgSVDIQQGLEILRERLL--NETTRLAAVRAVDNVAS 771
                 4789999999999999987776666555544433444477888888664..67788888888876654 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 2.6
      HEAT_2  31 ealpaLvellededpavRraaaeaLgai..g......dpealpaLkelldddd 75 
                  ++ aL+++++++d++    a   L+ +  +      ++  +++L++ll++  
  CCE28588.1 830 GVVSALIPAVTNADTHLLSPALLILASLvpDhsevvvSQGLVSSLCQLLKTQF 882
                 45888888888888888777777777654312223334556777777776655 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 1.2
      HEAT_2  31 ealpaLvellededpa.vRraaaeaLgaigdpealpaLkellddd 74 
                  ++  L +ll+++ +  v  ++ e  ++ig++ a ++L   l++d
  CCE28588.1 869 GLVSSLCQLLKTQFASiVLDQILELVAKIGESGASQSLMTGLLND 913
                 457777777777765414455556667899999999888877776 PP

  == domain 7  score: 3.4 bits;  conditional E-value: 0.12
      HEAT_2   10 ndpdpevrraairaLgrignpealpaL 36  
                  +++ ++v  aa++aLgr g+  ++++L
  CCE28588.1  991 HSEPDKVSLAAAIALGRAGSGNVVQYL 1017
                  345556666666666666665554443 PP

  == domain 8  score: 10.9 bits;  conditional E-value: 0.00054
      HEAT_2    6 qalendpdpevrraairaLg...rignpealpaLvellededpavRraaaeaL 55  
                  q+l+ ++  + r   +++ g   +++++  lp L ++l++++p +R +a++a 
  CCE28588.1 1062 QLLTASETADNRVVCAECVGrlvTLDPTAFLPKLQSVLKNKSPGIRGMAVQAV 1114
                  566667777778888888885546677777********************997 PP

  == domain 9  score: 8.3 bits;  conditional E-value: 0.0035
      HEAT_2   30 pealpaLvellededpavRraaaeaLgaigd..pe.alpaLkel 70  
                  ++++ +L+ +l+d+d+++Rr a ++L   ++  p+  lp+L el
  CCE28588.1 1131 TTLISMLLTMLQDADTEIRRLAMTTLNSAAHnkPDlILPHLGEL 1174
                  5678999*******************755431244356777666 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.3   0.00049      0.42     260     363 ..       3     118 ..       1     123 [. 0.74
   2 !   10.6   0.1   0.00017      0.15     112     169 ..     207     266 ..     181     340 .. 0.86
   3 ?   -0.6   0.0      0.42   3.6e+02     263     298 ..     432     470 ..     404     481 .. 0.73
   4 ?    2.5   0.0     0.049        42     458     520 ..     661     724 ..     619     728 .. 0.74
   5 !   23.8   0.5   1.7e-08   1.5e-05     112     328 ..     784    1156 ..     755    1171 .. 0.83
   6 !    8.0   0.2    0.0011       0.9     105     185 ..    1182    1263 ..    1178    1298 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00049
                 CCSTHHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHH.......X..XTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXT...TTHHHHHHHHHH CS
   Adaptin_N 260 pknelivlavnaLvrllsskdenlryvaLrtllkivkk.......e..pkavqhldlkifllktdddvsirlkaldlllklvde...sNvkeivkeLkk 346
                 p++++ ++ ++aLv+ l ++d+  r+++L+ ll+++++       +   +a +  d +i+ l+ d++ +++ +a+ +l  lv++   s +  +v++L +
  CCE28588.1   3 PSTSVKSQHISALVQKLGDSDPDFRFMSLNDLLQLLQSakpdilhHdyNTAARAVDGIIKTLD-DQNGEVQNLAIKCLGPLVSKlptSTIASLVDKLSS 100
                 5566667899****************************4443333123344445566889999.99999999999999999997555788888888877 PP

                 H.TTSSXXHHHHHHHHHH CS
   Adaptin_N 347 y.vkevadedfksklvka 363
                   +k++ d+++ s +++a
  CCE28588.1 101 LkLKNSVDNSVPSLALRA 118
                 535666677766666665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHT-SSH..HHHHHHHHHH..HHCCCCCHHCCCCCHHHHHHHCTT-SSHHHH CS
   Adaptin_N 112 aedlapaikkllkdrsp..yvrkkAalai..lklykkdpdllrkqlveeikellsdkdpgvv 169
                 +e+l + +++ll++++   +v+k A++ai  l++y  d++l  +++++++++ l+d++++ v
  CCE28588.1 207 VEALQQVVMQLLESKKGtsVVKKRAVVAIsmLAIYLTDEHL--DEVIQRLTSRLADTNTSAV 266
                 6777888999999776555******9875338899999999..558***********98655 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.42
                 T...HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX CS
   Adaptin_N 263 e...livlavnaLvrllsskdenlryvaLrtllkivkke 298
                 e   l+++a+  Lv+   +++en+r+ ++ +l+ +v k 
  CCE28588.1 432 EngvLYKQAAPSLVKRFNEREENVRLEVISALSLLVRKT 470
                 044588999999999999999999999999999988776 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.049
                 CTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHHHHHHHHH..XXSHHHHHHHHHHHHHH CS
   Adaptin_N 458 slaekfvlesekvklqiltalvKlyltspdketqekliqlvlslat..ssdlevrdRaveylqll 520
                 ++ +  + +se++  +i     + ++ + + e  ++l+q+++  +t  ++d evr++a+  l ++
  CCE28588.1 661 KISSEAIRTSEELVKAITPPGSRISDSKYKSEL-QSLYQVITDRCTanDADAEVRQKAIHALGIF 724
                 555555555555555555566666666665555.4888888888777999********9887766 PP

  == domain 5  score: 23.8 bits;  conditional E-value: 1.7e-08
                  HHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCC.......CHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHH CS
   Adaptin_N  112 aedlapaikkllkdrspyvrkkAalailklykk.......dpdllrkqlveeikellsdkdpgvvlaAvalleeikkndrlllkllpklvrrLcnll 201 
                  ++ ++ ++ + l++ +  +r ++a a+ +l+ +       ++  ++  +v+ ++ +++  d+ +++ A+ +l ++  +d++ + + + lv+ Lc+ll
  CCE28588.1  784 VQEVCLELSTHLRKANRALRGSSASALKHLILSpaardrlEKPTVEG-VVSALIPAVTNADTHLLSPALLILASL-VPDHSEVVVSQGLVSSLCQLL 878 
                  688999*************************9988554443444333.4666666669*****************.9999999999*********99 PP

                  .HCS-HHHHHHHHHHHCC---SSHHHH...................................................................... CS
   Adaptin_N  202 .teldpwlqvkiiklltrlarqepeer...................................................................... 227 
                   t++ ++    i++l+ +  ++  +++                                                                      
  CCE28588.1  879 kTQFASIVLDQILELVAKIGESGASQSlmtgllndvsvsgdpsvvgrvigtllvtddcsavvsidsfiselqrssesgdearvslalavlgetgmrl 975 
                  88999999999999999999999999999******************************************************************** PP

                  .........................................................HHHHHHHCGGCG..........................CS CS
   Adaptin_N  228 .......................................................skkellesllnllq..........................ss 243 
                                                                         +  +l++s+++ l+                            
  CCE28588.1  976 gpksplqpdlflgqfhsepdkvslaaaialgragsgnvvqylpvilnkmqaggntQ-YLLIQSIKEILYsaaspsanlqkyevpiwdqlltasetAD 1071
                  ****************************9999999987777777777776666541.4444444444447777777777777777777777777555 PP

                  SCHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX...XTTTTTTTCCCCSXX..TTSXHHHHHHHHHHH CS
   Adaptin_N  244 nnaVlletvnlivelapknelivlavnaLvrllsskdenlryvaLrtllkivkke...pkavqhldlkifllk..tdddvsirlkaldll 328 
                  n  V  e+v  +v+l+p++        +L++ l++k +++r +a+++    +  +    +a+ + +l++ ll    d d++ir++a+++l
  CCE28588.1 1072 NRVVCAECVGRLVTLDPTAF-----LPKLQSVLKNKSPGIRGMAVQAVRYTLPESdeaFDAMLKTTLISMLLTmlQDADTEIRRLAMTTL 1156
                  66666789999999888776.....59999999999999999999999887777757777888888877665411489999999999988 PP

  == domain 6  score: 8.0 bits;  conditional E-value: 0.0011
                  CC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCC CS
   Adaptin_N  105 sirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleeikkndrl 185 
                  s++ pel + ++   +k ++d+   vrk+A  ++++l++     +++  ++++i+  l d++ + +l+ +++ + i   +++
  CCE28588.1 1182 SVIKPELIKEVMLGPFKHMVDDGLEVRKSAYETLYALMETAFTRINHIdFFDRIIAGLRDDNDIRQLCNLMVSKLIVIDPDE 1263
                  58899******************************************9**************99999999998887333333 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       3.1   2.6e+03       4      21 ..      14      31 ..      12      39 .. 0.80
   2 !    7.4   0.0     0.007         6       5      30 ..      60      85 ..      57      86 .. 0.90
   3 ?    2.8   0.0      0.21   1.8e+02      14      31 .]     324     341 ..     316     341 .. 0.86
   4 !   11.1   0.1   0.00045      0.38      11      29 ..     405     423 ..     403     424 .. 0.91
   5 ?    0.9   0.0      0.86   7.4e+02       3      28 ..     442     467 ..     441     469 .. 0.89
   6 !    8.5   0.1    0.0031       2.7       9      29 ..     706     726 ..     702     728 .. 0.87
   7 ?   -1.4   0.1       4.9   4.2e+03      15      29 ..     757     771 ..     755     772 .. 0.81
   8 ?   -2.2   0.0       8.7   7.5e+03      15      26 ..     996    1007 ..     987    1010 .. 0.84
   9 ?    0.3   0.0       1.4   1.2e+03      17      28 ..    1073    1084 ..    1057    1086 .. 0.71
  10 ?    3.0   0.0      0.19   1.6e+02       1      24 [.    1091    1114 ..    1091    1115 .. 0.93
  11 !    8.6   0.1    0.0029       2.5       1      25 [.    1133    1157 ..    1133    1161 .. 0.90
  12 ?    3.1   0.0      0.18   1.5e+02      15      29 ..    1206    1220 ..    1202    1222 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3.1
                HHHHHHT-SSHHHHHHHH CS
        HEAT  4 lllkllsDpspeVReaAa 21
                +l++ l D++p+ R +++
  CCE28588.1 14 ALVQKLGDSDPDFRFMSL 31
                566668*****9998765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.007
                HHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT  5 llkllsDpspeVReaAakaLgalaev 30
                ++k l D++ eV   A+k+Lg l+++
  CCE28588.1 60 IIKTLDDQNGEVQNLAIKCLGPLVSK 85
                8899*****************99986 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHHCS CS
        HEAT  14 peVReaAakaLgalaevl 31 
                  eVReaA+ +L a++  +
  CCE28588.1 324 NEVREAALVSLEAFMASC 341
                 69*********9998765 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.00045
                 -SSHHHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgalae 29 
                 D s++VR+ Aak+L +l++
  CCE28588.1 405 DASWKVRRCAAKTLYTLIS 423
                 89*************9976 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.86
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                 P l+k  +  + +VR  ++ aL  l+
  CCE28588.1 442 PSLVKRFNEREENVRLEVISALSLLV 467
                 7899999999************9876 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.0031
                 HT-SSHHHHHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLgalae 29 
                  +D ++eVR+ A+ aLg +++
  CCE28588.1 706 ANDADAEVRQKAIHALGIFIS 726
                 49***************8765 PP

  == domain 7  score: -1.4 bits;  conditional E-value: 4.9
                 HHHHHHHHHHHHHHH CS
        HEAT  15 eVReaAakaLgalae 29 
                   R aA++a+ ++a+
  CCE28588.1 757 TTRLAAVRAVDNVAS 771
                 569******988876 PP

  == domain 8  score: -2.2 bits;  conditional E-value: 8.7
                  HHHHHHHHHHHH CS
        HEAT   15 eVReaAakaLga 26  
                  +V  aAa aLg+
  CCE28588.1  996 KVSLAAAIALGR 1007
                  4778******96 PP

  == domain 9  score: 0.3 bits;  conditional E-value: 1.4
                  HHHHHHHHHHHH CS
        HEAT   17 ReaAakaLgala 28  
                  R  +a+++g+l+
  CCE28588.1 1073 RVVCAECVGRLV 1084
                  999*******97 PP

  == domain 10  score: 3.0 bits;  conditional E-value: 0.19
                  HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaL 24  
                  +lP l++ l+ +sp +R +A++a+
  CCE28588.1 1091 FLPKLQSVLKNKSPGIRGMAVQAV 1114
                  69*******************996 PP

  == domain 11  score: 8.6 bits;  conditional E-value: 0.0029
                  HHHHHHHHHT-SSHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLg 25  
                  l+ +ll++l+D + e+R+ A  +L 
  CCE28588.1 1133 LISMLLTMLQDADTEIRRLAMTTLN 1157
                  6899**************9998885 PP

  == domain 12  score: 3.1 bits;  conditional E-value: 0.18
                  HHHHHHHHHHHHHHH CS
        HEAT   15 eVReaAakaLgalae 29  
                  eVR++A ++L al+e
  CCE28588.1 1206 EVRKSAYETLYALME 1220
                  7************98 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   0.00019      0.16      23     109 ..      12     105 ..       5     127 .. 0.87
   2 !    6.8   0.3    0.0077       6.5      66     156 ..     176     269 ..     171     274 .. 0.66
   3 ?   -1.5   0.0       2.8   2.4e+03      32      51 ..     405     424 ..     404     476 .. 0.63
   4 ?   -1.8   0.0       3.3   2.8e+03      31      49 ..     707     725 ..     694     736 .. 0.71
   5 ?    0.2   0.1      0.81   6.9e+02      22      75 ..     831     886 ..     822     917 .. 0.72
   6 !   17.0   0.1   5.5e-06    0.0047      22      97 ..    1091    1171 ..    1088    1184 .. 0.83
   7 !    8.5   0.3    0.0022       1.9      28     106 ..    1198    1277 ..    1179    1312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
        Cnd1  23 vepLrkrLkDedpyVRktaaivvakL........ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdaln 109
                 ++ L ++L D+dp  R   +  +++L        +++d+      ++ + k l+D+n +V+++a+ +l  + +k ++ ++ +l d +s+l+ + n
  CCE28588.1  12 ISALVQKLGDSDPDFRFMSLNDLLQLlqsakpdiLHHDYNTAARAVDGIIKTLDDQNGEVQNLAIKCLGPLVSKLPTSTIASLVDKLSSLKLK-N 105
                 67788999999999999999999999999888878889999999******************************9999999999999999843.4 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0077
        Cnd1  66 lleDenprVvanalaalteisek.se...naiynllpdiisklsdalne..csewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaa 156
                 +l+D+n +V   a+ +l e+ +  ++   ++ ++ l++++ +l+++ +   + ++  ++ +++L+ y ++++   ++++++l++rl  +n++ v + 
  CCE28588.1 176 MLQDQN-EVNPEAVDVLIEVVRCfGPllqSIEVEALQQVVMQLLESKKGtsVVKKRAVVAISMLAIYLTDEHL--DEVIQRLTSRLADTNTSAVTRR 269
                 555555.466666777777777643222133445555555555543332446667777778888899999988..9999999999999999998775 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.8
        Cnd1  32 DedpyVRktaaivvakLiln 51 
                 D +  VR++aa ++  Li+ 
  CCE28588.1 405 DASWKVRRCAAKTLYTLIST 424
                 77778888888888888543 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 3.3
        Cnd1  31 kDedpyVRktaaivvakLi 49 
                 +D d+ VR+ a+ ++   i
  CCE28588.1 707 NDADAEVRQKAIHALGIFI 725
                 5777777777776665555 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.81
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVv 75 
                 +v+ L  +++  d +    a++++a L   + ++v ++g++s l +ll+ + +++v
  CCE28588.1 831 VVSALIPAVTNADTHLLSPALLILASLvpDHSEVVVSQGLVSSLCQLLKTQFASIV 886
                 55555555666666666678899999975566788899999999999987776665 PP

  == domain 6  score: 17.0 bits;  conditional E-value: 5.5e-06
        Cnd1   22 lvepLrkrLkDedpyVRktaaivvakL.....ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynll 97  
                  ++++L++ Lk ++p +R  a+ +v           d + +  ++s+l+++l+D +++++ +a + l+  +++++++i+  l
  CCE28588.1 1091 FLPKLQSVLKNKSPGIRGMAVQAVRYTlpesdEAFDAMLKTTLISMLLTMLQDADTEIRRLAMTTLNSAAHNKPDLILPHL 1171
                  67899*******************876465322224677888****************************99999887655 PP

  == domain 7  score: 8.5 bits;  conditional E-value: 0.0022
        Cnd1   28 krLkDedpyVRktaaivvakLilndmvkekg..flselaklleDenprVvanalaalteiseksenaiynllpdiisklsd 106 
                  k + D+   VRk a  ++  L++  + + +   f++++   l+D+n  +++++ ++ +++   +++++++ l +i+  +++
  CCE28588.1 1198 KHMVDDGLEVRKSAYETLYALMETAFTRINHidFFDRIIAGLRDDN-DIRQLCNLMVSKLIVIDPDETFRRLDSIAEAYKA 1277
                  56778899*************999988777777***********87.6***********9999999999999888887775 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   4.1e-06    0.0035       4      95 ..      15     110 ..      12     113 .. 0.94
   2 ?   -0.2   0.0       1.3   1.1e+03      60      88 ..     234     263 ..     197     276 .. 0.67
   3 ?   -1.4   0.0         3   2.6e+03      41     108 ..     440     469 ..     404     473 .. 0.55
   4 ?    4.3   0.1     0.052        44       8     100 ..     795     899 ..     790     901 .. 0.71
   5 !   11.3   0.0   0.00035       0.3       6      82 ..    1097    1174 ..    1092    1213 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.1e-06
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliekkske....avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleeyeeenekeslder 95 
                  +++l d+ + +r   l+ L +l+++ +++    +  ++ + ++ ++++L d++  v   aik+L  L+++ p++++  L+++ ++ + k+s+d+ 
  CCE28588.1  15 LVQKLGDSDPDFRFMSLNDLLQLLQSAKPDilhhDYNTAARAVDGIIKTLDDQNGEVQNLAIKCLGPLVSKLPTSTIASLVDKLSSLKLKNSVDNS 110
                 578999**********************99888888899999999***************************************999999999976 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.3
     RTP1_C1  60 aikgLv.aLadvfpeevlklLleeyeeene 88 
                 ai++L+  L+d + +ev+++L+++ +++n+
  CCE28588.1 234 AISMLAiYLTDEHLDEVIQRLTSRLADTNT 263
                 444444236666677777777776654444 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3
     RTP1_C1  41 ilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleeyeeenekeslderlkvGEaLlrvirr 108
                  +  l++  ++ ++ v L++i++L+ L+                                      r+
  CCE28588.1 440 AAPSLVKRFNEREENVRLEVISALSLLV--------------------------------------RK 469
                 3333333444444444555555554444......................................44 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.052
     RTP1_C1   8 lqdpllpvrahglvlLrkliekkske...avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevl.klLleey....eeenekeslderl.. 96 
                 l+    ++r+   + L++li +  +    ++ ++e +++ l+ a+++ d+ +   a  +L++L+  ++e v+ + L++      +++  +  ld+ l  
  CCE28588.1 795 LRKANRALRGSSASALKHLILSPAARdrlEKPTVEGVVSALIPAVTNADTHLLSPALLILASLVPDHSEVVVsQGLVSSLcqllKTQFASIVLDQILel 893
                 5566667899999999999999987755567778889999999*********************99988776344555544443444444444444433 PP

     RTP1_C1  97 ..kvGE 100
                   k+GE
  CCE28588.1 894 vaKIGE 899
                 336665 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.00035
     RTP1_C1    6 kdlqdpllpvrahglvlLrkliekkske.avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLlee 82  
                  + l+++ + +r+ +++  r  + ++++  ++  +++++++ll++L+d d+ +   a+ +L + a+  p+ +l++L e 
  CCE28588.1 1097 SVLKNKSPGIRGMAVQAVRYTLPESDEAfDAMLKTTLISMLLTMLQDADTEIRRLAMTTLNSAAHNKPDLILPHLGEL 1174
                  568889999**********8877766545999*****************************************99876 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.57   4.9e+02      25      53 ..      56      80 ..      49      82 .. 0.82
   2 ?   -2.3   0.0       7.9   6.7e+03      26      39 ..     191     204 ..     185     214 .. 0.84
   3 ?   -1.2   0.1       3.7   3.2e+03      25      53 ..     210     236 ..     193     238 .. 0.52
   4 ?    3.5   0.0      0.13   1.1e+02       9      43 ..     273     305 ..     265     308 .. 0.80
   5 ?    0.9   0.0      0.82     7e+02       3      30 ..     326     353 ..     324     355 .. 0.73
   6 ?    2.2   0.0      0.31   2.7e+02       1      53 [.     408     464 ..     403     466 .. 0.66
   7 ?    4.5   0.0     0.059        50      37      53 ..     706     722 ..     703     724 .. 0.86
   8 ?    0.5   0.1       1.1   9.3e+02       4      38 ..     803     840 ..     801     846 .. 0.74
   9 ?    1.3   0.0      0.62   5.3e+02      39      54 ..     992    1007 ..     963    1008 .. 0.83
  10 ?    2.8   0.0       0.2   1.7e+02      15      51 ..    1077    1113 ..    1071    1116 .. 0.83
  11 ?    2.7   0.0      0.23   1.9e+02       2      34 ..    1147    1179 ..    1146    1184 .. 0.90
  12 ?   -2.3   0.0       8.3   7.1e+03      27      46 ..    1233    1247 ..    1228    1250 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.57
     HEAT_EZ 25 lvpeilpaLlalLnddsd.eVRaaAagaLg 53
                +v+ i++ L      d+  eV+  A+ +Lg
  CCE28588.1 56 AVDGIIKTLD-----DQNgEVQNLAIKCLG 80
                6777888888.....8889*********98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.9
     HEAT_EZ  26 vpeilpaLlalLnd 39 
                 + e+++++++lL++
  CCE28588.1 191 LIEVVRCFGPLLQS 204
                 56899999999975 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.7
     HEAT_EZ  25 lvpeilpaLlalLnddsd..eV.RaaAagaLg 53 
                 l+++++    +lL++ ++  +V ++ A+ a++
  CCE28588.1 210 LQQVVM----QLLES-KKgtSVvKKRAVVAIS 236
                 233333....44444.3346777777777776 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.13
     HEAT_EZ   9 waLGrlaggepellqplvpeilpaLlalLnddsde 43 
                 + +G++a   p    +++p++ p+Ll++L  ++de
  CCE28588.1 273 SIVGSMARSIPVRFGQHIPKVTPFLLRAL--SEDE 305
                 5678888888889999************9..4443 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.82
     HEAT_EZ   3 vRraAawaLGr.laggepellqplvpeil 30 
                 vR+aA+  L + +a  +p++++p+ ++i+
  CCE28588.1 326 VREAALVSLEAfMA-SCPQDMRPFTDVII 353
                 77777777733666.89999999988887 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.31
     HEAT_EZ   1 wrvRraAawaLGr...laggepellqp...lvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 w vRr Aa +L +       ++ +l     l +++ p L+++ n  + +VR  ++ aL+
  CCE28588.1 408 WKVRRCAAKTLYTlisT--RGSGDLLEngvLYKQAAPSLVKRFNEREENVRLEVISALS 464
                 88999999999335322..2222222224666677777777777777799988888887 PP

  == domain 7  score: 4.5 bits;  conditional E-value: 0.059
     HEAT_EZ  37 LnddsdeVRaaAagaLg 53 
                  nd ++eVR++A++aLg
  CCE28588.1 706 ANDADAEVRQKAIHALG 722
                 577888**********9 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 1.1
     HEAT_EZ   4 RraAawaLGr...laggepellqplvpeilpaLlalLn 38 
                 R + a+aL      ++ +++l +p v+ ++ aL+++ +
  CCE28588.1 803 RGSSASALKHlilSPAARDRLEKPTVEGVVSALIPAVT 840
                 66677777667774556999999999999999997764 PP

  == domain 9  score: 1.3 bits;  conditional E-value: 0.62
     HEAT_EZ   39 ddsdeVRaaAagaLgn 54  
                  +++d+V  aAa+aLg+
  CCE28588.1  992 SEPDKVSLAAAIALGR 1007
                  57789*********97 PP

  == domain 10  score: 2.8 bits;  conditional E-value: 0.2
     HEAT_EZ   15 aggepellqplvpeilpaLlalLnddsdeVRaaAaga 51  
                  a++ ++l+ +  ++ lp L + L+++s+ +R+ A+ a
  CCE28588.1 1077 AECVGRLVTLDPTAFLPKLQSVLKNKSPGIRGMAVQA 1113
                  566666677777889********************98 PP

  == domain 11  score: 2.7 bits;  conditional E-value: 0.23
     HEAT_EZ    2 rvRraAawaLGr.laggepellqplvpeilpaLl 34  
                  ++Rr A  +L + +a + p+l+ p++ e++p+ l
  CCE28588.1 1147 EIRRLAMTTL-NsAAHNKPDLILPHLGELMPFVL 1179
                  589*******.669*****************976 PP

  == domain 12  score: -2.3 bits;  conditional E-value: 8.3
     HEAT_EZ   27 peilpaLlalLnddsdeVRa 46  
                  ++i++ L      d+ ++R+
  CCE28588.1 1233 DRIIAGLR-----DDNDIRQ 1247
                  56777777.....7777765 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.017        15      26      86 ..       9      73 ..       3      85 .. 0.83
   2 ?   -2.1   0.0       7.3   6.2e+03       6      40 ..     231     262 ..     227     269 .. 0.65
   3 ?   -0.5   0.0       2.2   1.9e+03       3      37 ..     327     361 ..     325     367 .. 0.89
   4 !    8.9   0.0    0.0027       2.3       6      70 ..    1105    1175 ..    1100    1183 .. 0.72
   5 ?    2.0   0.0      0.39   3.3e+02      33      71 ..    1197    1237 ..    1182    1246 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.017
  Vac14_Fab1_bd 26 eeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlk....llneifdalvklvaDsdesvks 86
                   ++ ++ +++ + D+d   R+ +   l  + + ak ++l+    +  +  d+++k + D++ +v++
     CCE28588.1  9 SQHISALVQKLGDSDPDFRFMSLNDLLQLLQSAKPDILHhdynTAARAVDGIIKTLDDQNGEVQN 73
                   56788999******************************833323567788999999999999987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 7.3
  Vac14_Fab1_bd   6 gligLaavaialekkikeyleeivkpvlkcfsDkd 40 
                    +++++  +ai l+   +e+l+e+++ + + + D++
     CCE28588.1 231 AVVAISMLAIYLT---DEHLDEVIQRLTSRLADTN 262
                    5666666666665...5667777777777776665 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.2
  Vac14_Fab1_bd   3 rkggligLaavaialekkikeyleeivkpvlkcfs 37 
                    r+++l++L a   +  ++++++++ i+++ l++++
     CCE28588.1 327 REAALVSLEAFMASCPQDMRPFTDVIITSALRYLK 361
                    8999************************9998875 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0027
  Vac14_Fab1_bd    6 gligLaavaia..lekk...ikeyl.eeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneif 70  
                     g+ g+a  a+   l ++    + +l  ++++++l++++D+d+++R  a+ +l   a    + +l +l e+ 
     CCE28588.1 1105 GIRGMAVQAVRytLPESdeaFDAMLkTTLISMLLTMLQDADTEIRRLAMTTLNSAAHNKPDLILPHLGELM 1175
                     555555555531133323443333315789999************************99999999998875 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.39
  Vac14_Fab1_bd   33 lkcfsDkdsrvRyyacEslyniakva..kgevlkllneifd 71  
                     +k + D+  +vR  a E+ly ++ +a  + + + ++ +i  
     CCE28588.1 1197 FKHMVDDGLEVRKSAYETLYALMETAftRINHIDFFDRIIA 1237
                     577889999************99876114445666666655 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.031        27      36     142 ..       8     116 ..       3     123 .. 0.69
   2 ?    5.1   0.1     0.012        10      78     151 ..     209     276 ..     191     335 .. 0.85
   3 ?    2.4   0.0     0.079        68      99     160 ..     412     473 ..     405     482 .. 0.86
   4 !    7.7   0.0     0.002       1.7     122     154 ..     693     725 ..     616     738 .. 0.90
   5 ?   -0.8   0.1      0.74   6.3e+02     189     239 ..    1105    1149 ..    1038    1157 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.031
        IFRD  36 weekLkqaidelteksaktReaaLesllellsshyleefveerlatl...ldalekslkkgkseEqalAlkalallcitlgagdeseeileelkpv.Lk 130
                 + +++++ +++l ++    R  +L+ ll+ll+s   ++ + ++++t    +d ++k l   ++e q lA+k+l+ l+  l + ++  +++++l+++ Lk
  CCE28588.1   8 KSQHISALVQKLGDSDPDFRFMSLNDLLQLLQSA-KPDILHHDYNTAaraVDGIIKTLDDQNGEVQNLAIKCLGPLVSKLPT-STIASLVDKLSSLkLK 104
                 5677888888999999999************874.56677777777611155566666678999*********999776543.4555566666666455 PP

        IFRD 131 riikdssvslsa 142
                 + + +s  sl+ 
  CCE28588.1 105 NSVDNSVPSLAL 116
                 555554445554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.012
        IFRD  78 rlatlldalekslkkgkseEqalAlkalallcitlgagdeseeileelkpvLkriikdssvslsakaaaieaLg 151
                  l++++ +l+ s  kg+s  +  A+ a+++l+i        +e l+e+ + L++ + d ++s+ ++  +i+  g
  CCE28588.1 209 ALQQVVMQLLESK-KGTSVVKKRAVVAISMLAIY-----LTDEHLDEVIQRLTSRLADTNTSAVTRRLYISIVG 276
                 5667777777775.59999999999999999999.....55788899999999999998888888887776655 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.079
        IFRD  99 alAlkalallcitlgagdesee..ileelkpvLkriikdssvslsakaaaieaLglltfvggad 160
                   A+k l  l+ t g+gd  e+  ++++  p L +  + ++  ++++ ++i+aL+ll+   g++
  CCE28588.1 412 RCAAKTLYTLISTRGSGDLLENgvLYKQAAPSLVKRFNERE--ENVRLEVISALSLLVRKTGEG 473
                 67899999999999***9999999**********9999999..9************99777766 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.002
        IFRD 122 leelkpvLkriikdssvslsakaaaieaLgllt 154
                 l++l +v++  +++++++++++++ai+aLg++ 
  CCE28588.1 693 LQSLYQVITDRCTANDADAEVRQKAIHALGIFI 725
                 68899999999*******************975 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.74
        IFRD  189 skalvtaalsawglLltllpssklnkkleedleealealvelLdssdvevr 239 
                  +  +   a++a+   l +  ++ + ++l++   ++++ l ++L++ d+e+r
  CCE28588.1 1105 G--IRGMAVQAVRYTLPES-DEAFDAMLKT---TLISMLLTMLQDADTEIR 1149
                  3..4444444444444444.3344444444...457777777777777776 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.087        74      63      97 ..      67     101 ..      26     105 .. 0.74
   2 ?   -2.5   0.0       5.7   4.9e+03      78      94 ..     201     217 ..     192     239 .. 0.57
   3 !    9.4   0.0    0.0011      0.93       4      70 ..     245     309 ..     241     313 .. 0.92
   4 ?   -3.3   0.0       9.8   8.4e+03      26      52 ..     453     479 ..     446     480 .. 0.78
   5 ?    0.3   0.0      0.77   6.6e+02      28      80 ..     620     675 ..     609     680 .. 0.76
   6 ?   -1.4   0.0       2.5   2.2e+03      24      43 ..     709     728 ..     693     738 .. 0.76
   7 ?   -2.7   0.0       6.4   5.4e+03      63      86 ..    1048    1071 ..    1030    1079 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.087
         UME  63 eidelrsaalsvWatllsnlededleplleqtfal 97 
                 +++e+++ a+++   l+s+l  + + +l++++++l
  CCE28588.1  67 QNGEVQNLAIKCLGPLVSKLPTSTIASLVDKLSSL 101
                 2379**************************98876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.7
         UME  78 llsnlededleplleqt 94 
                 ll+++e+e+l++++ q+
  CCE28588.1 201 LLQSIEVEALQQVVMQL 217
                 55555555555555443 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0011
         UME   4 qhilgiltrlseklndshgkkslaekkraikaleeliklagssissalpqimacLqsaleidelrsa 70 
                 +h+  +++rl++ l d++   s  +++ +i   + + + +  +    +p+++ +L  al++del s+
  CCE28588.1 245 EHLDEVIQRLTSRLADTNT--SAVTRRLYISIVGSMARSIPVRFGQHIPKVTPFLLRALSEDELASH 309
                 5777899*******99987..588****************************************987 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 9.8
         UME  26 laekkraikaleeliklagssissalp 52 
                  + + ++i al+ l++  g+ +++a p
  CCE28588.1 453 ENVRLEVISALSLLVRKTGEGLHIANP 479
                 556888999999999999998887765 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.77
         UME  28 ekkraikaleeliklagss.issalpqimacLqsalei..delrsaalsvWatlls 80 
                  +  +++ +++l+k  +ss +++ l++++a    a+++   ++ s+a+++ ++l++
  CCE28588.1 620 LRVATLRLMGDLFKTHSSSiLQPHLTRVVAGVTAAVHDrfYKISSEAIRTSEELVK 675
                 56778999999***999998899999999998888877444666777766666665 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 2.5
         UME  24 kslaekkraikaleelikla 43 
                  + + +++ai+al+ +i+ a
  CCE28588.1 709 ADAEVRQKAIHALGIFISRA 728
                 36778999999999999765 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 6.4
         UME   63 eidelrsaalsvWatllsnleded 86  
                   +++l++  + +W+ ll+  e +d
  CCE28588.1 1048 PSANLQKYEVPIWDQLLTASETAD 1071
                  347899999999999999877665 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.3   0.00022      0.18     127     267 ..      59     214 ..      38     220 .. 0.78
   2 ?   -2.5   0.0       3.3   2.9e+03      85     154 ..     399     470 ..     391     474 .. 0.62
   3 !    6.5   0.3    0.0062       5.3     124     223 ..    1133    1236 ..    1111    1259 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
        Tti2 127 piLnllDdtdtsvKlrGlklLqtlleklessk...........llkrtGLdsvfedallpcllyLPsltpeeeSlklLraaYpallsLa..klefaeks 212
                 +i++ lDd++ +v   ++k+L  l++kl++s             lk++   sv + al+ +l  LP+ +p  ++ +  ++aY+a+  ++  +l  ++  
  CCE28588.1  59 GIIKTLDDQNGEVQNLAIKCLGPLVSKLPTSTiaslvdklsslKLKNSVDNSVPSLALRAVLIALPRPVPGSTTTTEVQTAYDAIRHVLipRLIGPSAL 157
                 799***********************************99998888888889*********************************87762233333333 PP

        Tti2 213 kerrklldkilregilsglsh.ases.prlvellleqlsevveelgistvkhLkrli 267
                 +++ ++ +++ +  +  g+   ++e  p+ v++l+e ++     l+   v  L++++
  CCE28588.1 158 SDKSRFSTRVTSPEVTIGMLQdQNEVnPEAVDVLIEVVRCFGPLLQSIEVEALQQVV 214
                 337777777777666666666333335677777776666666666666666666655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.3
        Tti2  85 lsddesrkpWksgdlkaisvlawiirqlqsk..eieanwplivPpiLnllDdtdtsvKlrGlklLqtllekl 154
                  +dd++ + Wk +++ a ++  +i  + + +  e     +   P +++  ++++++v+l  ++ L+ l+ k+
  CCE28588.1 399 FEDDDDDASWKVRRCAAKTLYTLISTRGSGDllENGVLYKQAAPSLVKRFNEREENVRLEVISALSLLVRKT 470
                 556666678886666655555555444444443223456667777777777777888877777777777776 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0062
        Tti2  124 ivPpiLnllDdtdtsvKlrGlklLqtlleklesskllkrtG.......LdsvfedallpcllyLPsltpeeeSlklLraaYpallsLaklefaeksk 213 
                  +++ +L++l d dt+++  ++  L++   + ++  +l   G         sv+++ l++  ++ P    +++ l++ + aY++l++L+++ f+  + 
  CCE28588.1 1133 LISMLLTMLQDADTEIRRLAMTTLNSAAHNKPDL-ILPHLGelmpfvlTESVIKPELIKEVMLGPFKHMVDDGLEVRKSAYETLYALMETAFTRIN- 1227
                  7899*****************9999999888888.555555433333256899999999999*****************************97433. PP

        Tti2  214 errklldkil 223 
                     +++d+i+
  CCE28588.1 1228 -HIDFFDRII 1236
                  .566666665 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0034       2.9      41     114 ..       9      84 ..       5      86 .. 0.81
   2 ?    2.7   0.1      0.15   1.3e+02      76     112 ..     200     238 ..     174     241 .. 0.76
   3 ?   -1.1   0.0       2.2   1.9e+03      95     114 ..     707     726 ..     689     728 .. 0.82
   4 ?    3.6   0.0      0.08        68      43     111 ..    1091    1158 ..    1050    1163 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0034
  V-ATPase_H_C  41 fkllkkLiklleeskdktvlavalnDigelvkllp...egkkvleklkaKekimellehedeevkyeALkavqkllv 114
                    +++++L++ l  ++d+    + lnD+ +l++ ++     +++ +  +a + i++ l++++ ev+  A+k++  l++
    CCE28588.1   9 SQHISALVQKL-GDSDPDFRFMSLNDLLQLLQSAKpdiLHHDYNTAARAVDGIIKTLDDQNGEVQNLAIKCLGPLVS 84 
                   57889999999.5899999***********9996532234444566777899*******************988876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.15
  V-ATPase_H_C  76 egkkvleklkaKekimellehe..deevkyeALkavqkl 112
                      + +e    ++++m+lle++   + vk++A  a+++l
    CCE28588.1 200 PLLQSIEVEALQQVVMQLLESKkgTSVVKKRAVVAISML 238
                   4455666677799*******9867889*******99876 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.2
  V-ATPase_H_C  95 ehedeevkyeALkavqkllv 114
                   +++d+ev+++A++a+  +++
    CCE28588.1 707 NDADAEVRQKAIHALGIFIS 726
                   56799********9987775 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.08
  V-ATPase_H_C   43 llkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqk 111 
                     l kL ++l ++k++ +  +a++ +   + + +e  + + k+   + ++++l+++d+e+++ A++++++
    CCE28588.1 1091 FLPKLQSVL-KNKSPGIRGMAVQAVRYTLPESDEAFDAMLKTTLISMLLTMLQDADTEIRRLAMTTLNS 1158
                    566788888.467778888888888888888888888888899999999****************9876 PP

>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.015        13      32      71 ..      44      83 ..       7      86 .. 0.83
   2 ?   -2.3   0.0       4.4   3.7e+03      93     135 ..     216     256 ..     179     261 .. 0.58
   3 !    9.0   0.0    0.0014       1.2      42      79 ..     438     475 ..     430     480 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.015
                HHHHCSTCHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
         VHS 32 DlinekeagpkeavrlikkkinsknphvallaLklldalv 71
                D++ ++ +++  av+ i k ++++n +v+ la+k l  lv
  CCE28588.1 44 DILHHDYNTAARAVDGIIKTLDDQNGEVQNLAIKCLGPLV 83
                88889999***************************99888 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.4
                 HHHHCTTTCHCS.HHHHHHHHHHHHHHHTTT-TTGHHHHHHHH CS
         VHS  93 klilekknsklakvkkkvlelleeWadafknkpelkkisdvyk 135
                 +l+++kk  +   vkk+++ ++  +a  + ++   + i+ + +
  CCE28588.1 216 QLLESKKGTSV--VKKRAVVAISMLAIYLTDEHLDEVIQRLTS 256
                 43333333333..666666666666666655555555554444 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHH CS
         VHS  42 keavrlikkkinsknphvallaLklldalvkNcGskfh 79 
                 k+a+ ++ k+ n+++++v l  +++l  lv+  G+ +h
  CCE28588.1 438 KQAAPSLVKRFNEREENVRLEVISALSLLVRKTGEGLH 475
                 88999******************************999 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.013        11     130     215 ..      10      94 ..       1     107 [. 0.76
   2 ?   -2.7   0.1       4.2   3.6e+03      77     126 ..     191     243 ..     185     267 .. 0.61
   3 ?    0.4   0.0      0.45   3.9e+02     144     193 ..     408     456 ..     404     462 .. 0.89
   4 ?   -1.3   0.0       1.6   1.3e+03      92     196 ..     693     717 ..     619     730 .. 0.62
   5 ?   -2.9   0.1       4.9   4.2e+03      76      99 ..     870     894 ..     866     898 .. 0.64
   6 !    7.9   0.0    0.0024       2.1     131     208 ..    1090    1164 ..    1066    1166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.013
     CLASP_N 130 rilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwPsrAksll 215
                 + ++ l + l d  +  R +s++ L +ll++ + +  ++++++    +++ ++k l D n +V + a +++  + +  P+   + l
  CCE28588.1  10 QHISALVQKLGDSDPDFRFMSLNDLLQLLQSAKPDILHHDYNTAA-RAVDGIIKTLDDQNGEVQNLAIKCLGPLVSKLPTSTIASL 94 
                 44444555556788999*************999777777777755.77888999***********999999999888888765544 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.2
     CLASP_N  77 lkelaiqlkeqldpm.veillptLlkllgdtK..kiisqnanqalaallsnas 126
                 l e+++ +++ l++  ve+l ++ ++ll ++K   ++ + a +a++ l   ++
  CCE28588.1 191 LIEVVRCFGPLLQSIeVEALQQVVMQLLESKKgtSVVKKRAVVAISMLAIYLT 243
                 55666667777777778888888888888777334566667666666655555 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.45
     CLASP_N 144 vqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVR 193
                  + R ++a+ L +l++  + +   le+  l++++ +sl+k  +  + +VR
  CCE28588.1 408 WKVRRCAAKTLYTLISTRG-SGDLLENGVLYKQAAPSLVKRFNEREENVR 456
                 5789999*********999.999****************99888888888 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.6
     CLASP_N  92 veillptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanp 190
                 +++l++++ +++ +                                                                                +Da+ 
  CCE28588.1 693 LQSLYQVITDRCTA--------------------------------------------------------------------------------NDADA 711
                 44444444444433................................................................................35555 PP

     CLASP_N 191 tVReta 196
                 +VR++a
  CCE28588.1 712 EVRQKA 717
                 555544 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 4.9
     CLASP_N  76 llkelaiqlkeqldpm.veillptL 99 
                 l++ l++ lk+q+++  ++++l++ 
  CCE28588.1 870 LVSSLCQLLKTQFASIvLDQILELV 894
                 6667777777777666566666654 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.0024
     CLASP_N  131 i.lqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwP 208 
                    l  l++ l++K++ +R ++++ ++  l ++    ++++a l   ++  +l  +l+Da++++R+ a +t+ + +++ P
  CCE28588.1 1090 AfLPKLQSVLKNKSPGIRGMAVQAVRYTLPESD---EAFDAML-KTTLISMLLTMLQDADTEIRRLAMTTLNSAAHNKP 1164
                  446778899999999999999999999999999...4454444.3467799**************99999877777766 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.9     0.016        14      26     221 ..      79     278 ..      55     280 .. 0.78
   2 ?    0.7   0.0      0.26   2.2e+02     370     414 ..     288     350 ..     286     358 .. 0.76
   3 ?   -0.8   0.0      0.72   6.2e+02     330     363 ..     437     470 ..     435     476 .. 0.89
   4 ?   -2.3   0.2       2.1   1.8e+03     379     417 ..     835     875 ..     819     922 .. 0.61
   5 ?   12.9   0.3   5.1e-05     0.044     374     418 ..    1132    1176 ..    1093    1180 .. 0.96

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.016
     MMS19_C  26 Laelssekqlfetlvirllnkldlvlksnessaayahailstllkllekkq....tdlekeellnsyydrivprlltlvvsaastss............ 108
                 L+ l s  +l  +++  l++kl+ +  +n+  +  + + l+++l +l + +    t +e +  ++ + + ++prl+  ++ + ++              
  CCE28588.1  79 LGPLVS--KLPTSTIASLVDKLSSLKLKNSVDNSVPSLALRAVLIALPRPVpgstTTTEVQTAYDAIRHVLIPRLIGPSALSDKSRFstrvtspevtig 175
                 555555..6778899999999977665555558888899999999999988887766777888888888888888888555444433899999999999 PP

     MMS19_C 109 siltddrllevlgriinlivrslssskqqevleevvalfltgdaskkfeplsesasesqkqliilftailaalrkevkl...pdlsellnellellase 204
                 + ++++++   +++++  +vr + +  q+  +e++ ++ ++  +sk             k + ++ + ++ a++        + l+e++++l+ +la++
  CCE28588.1 176 MLQDQNEVNPEAVDVLIEVVRCFGPLLQSIEVEALQQVVMQLLESK-------------KGTSVVKKRAVVAISMLAIYltdEHLDEVIQRLTSRLADT 261
                 8888888889999999999999999999999999999999887777.............55667777778887776555677889999999999***** PP

     MMS19_C 205 aespflrlaylrllall 221
                 ++s  +r  y  ++ ++
  CCE28588.1 262 NTSAVTRRLYISIVGSM 278
                 *****999999888776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.26
     MMS19_C 370 peLptLlPlLlqaLdlpdae..................vkastLetlksileespslvsehls 414
                 +++p++ P+Ll+aL+ ++ +                  v+ ++L  l++ + + p+ + ++++
  CCE28588.1 288 QHIPKVTPFLLRALSEDELAshlekisegddlslefneVREAALVSLEAFMASCPQDMRPFTD 350
                 599***********9888877888888888888888888888888887777666666555555 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.72
     MMS19_C 330 FstvlpklvegfkssdsetkenyLvALshllkhv 363
                 +++  p lv++f++++++ +  +  ALs+l++++
  CCE28588.1 437 YKQAAPSLVKRFNEREENVRLEVISALSLLVRKT 470
                 67789************************99876 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.1
     MMS19_C 379 LlqaLdlpdaevkastLetlksileespslvse..hlssLv 417
                 L+ a +  d+++ + +L +l+s++ +++++v +   +ssL 
  CCE28588.1 835 LIPAVTNADTHLLSPALLILASLVPDHSEVVVSqgLVSSLC 875
                 44455555555555555555555553333222213333333 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 5.1e-05
     MMS19_C  374 tLlPlLlqaLdlpdaevkastLetlksileespslvsehlssLvp 418 
                  tL+++Ll+ L+  d+e+++ +++tl+s++ ++p+l+ +hl +L p
  CCE28588.1 1132 TLISMLLTMLQDADTEIRRLAMTTLNSAAHNKPDLILPHLGELMP 1176
                  8****************************************9988 PP

>> GhoS  Endoribonuclease GhoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00093       0.8      34      82 ..      59     108 ..      53     114 .. 0.88
   2 ?   -2.4   0.0       5.9     5e+03      36      53 ..    1138    1155 ..    1114    1166 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00093
                 TEESEEE-SSS-EEE-TTSEEE.E---S-HHHHHHHHHHGGGTSS----E CS
        GhoS  34 gFsltlaDeeGkpheLgtntfg.lisalseeeieelaaglaesalgkkpe 82 
                 g   tl D++G++++L+  + g l+s l  + i+ l+ +l++  l + ++
  CCE28588.1  59 GIIKTLDDQNGEVQNLAIKCLGpLVSKLPTSTIASLVDKLSSLKLKNSVD 108
                 66789****************989****************9887777665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.9
                  ESEEE-SSS-EEE-TTSE CS
        GhoS   36 sltlaDeeGkpheLgtnt 53  
                  +++l D++ ++++L+  t
  CCE28588.1 1138 LTMLQDADTEIRRLAMTT 1155
                  455666666666665443 PP

>> SMG1  Serine/threonine-protein kinase smg-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00093      0.79     542     613 ..     164     234 ..     136     246 .. 0.82
   2 ?   -1.9   0.2      0.97   8.3e+02      82     209 ..    1015    1142 ..    1012    1168 .. 0.67
   3 ?   -1.9   0.0      0.92   7.8e+02     330     380 ..    1261    1310 ..    1260    1313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00093
        SMG1 542 lsksesgedrktvllkdsecspevlnFvvaklmeCyqslgdWsslvewkqkelelkedsedksfllrrdlvs 613
                  ++++s e  + +l+ ++e+ pe ++ ++ +++ C+  l +  +++ ++q +++l e+++ +s++++r +v+
  CCE28588.1 164 STRVTSPEVTIGMLQDQNEVNPEAVDVLI-EVVRCFGPLLQSIEVEALQQVVMQLLESKKGTSVVKKRAVVA 234
                 4467777888899***********99776.6899**********************************9954 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.97
        SMG1   82 nllakllekenlnaetrrlllkWiqeialllkeseeyapllleseeflkivrsllavalkedekisleacaclqallkaksellk...eellqs... 172 
                  + l  +l+k ++  +t+ ll++ i+ei    + ++  a+ l  ++    i  +ll+++ + d+++  + c  +  l++  +++     + +l++   
  CCE28588.1 1015 QYLPVILNKMQAGGNTQYLLIQSIKEIL--YSAASPSAN-L--QKYEVPIWDQLLTASETADNRVVCAEC--VGRLVTLDPTAFLpklQSVLKNksp 1104
                  5677789999999999999999999994..455555555.3..333457888888888888877765444..4444444444333224444443333 PP

        SMG1  173 .ivdlalvqlqslekevreayakllaklplnvvlskls 209 
                   i+ +a++ +  + +e  ea+ ++l++  +++ l+ l+
  CCE28588.1 1105 gIRGMAVQAVRYTLPESDEAFDAMLKTTLISMLLTMLQ 1142
                  37889999999999999999999998877777777554 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.92
        SMG1  330 pqdTFttiEgiikslArelsnpakeveasaldgksleellsnqlrlrlLlq 380 
                  p++TF+ +++i   + + ls   k+ +a ++d++++ee  ++ lr++lLl+
  CCE28588.1 1261 PDETFRRLDSIAEAYKAVLSVKLKD-NAVKQDVEKQEEANKSVLRITLLLG 1310
                  7899999999999998888876666.4555668899999999999999985 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0065       5.5      74     153 ..      29     111 ..       8     111 .. 0.74
   2 ?    0.4   0.4      0.65   5.6e+02      67     142 ..     179     256 ..     164     263 .. 0.83
   3 ?    3.6   0.1      0.07        59      48     131 ..     777     864 ..     742     891 .. 0.63
   4 ?    1.9   0.1      0.23     2e+02      86     123 ..    1121    1158 ..    1089    1168 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0065
     DUF3361  74 rslaiLesivlnss...elyelvekevtlesLiehLqssnqeiqtnalaLlnALllkaddskrkelaetlskkqlrkvilkni 153
                  sl+ L ++ ++++    +++  + +  ++ +i+ L+++n e+q  a+  l  L+ k + s+  +l+++ls+ +l++ + +++
  CCE28588.1  29 MSLNDLLQLLQSAKpdiLHHDYNTAARAVDGIIKTLDDQNGEVQNLAIKCLGPLVSKLPTSTIASLVDKLSSLKLKNSVDNSV 111
                 56666666666555332112233334457899*********************************************997765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.65
     DUF3361  67 adasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqe..iqtnalaLlnALllkaddskrkelaetlsk 142
                  ++++  +++++L ++v     l + +e e   + +++ L+s++ +  +++ a++ +  L +  +d++  e+ + l++
  CCE28588.1 179 DQNEVNPEAVDVLIEVVRCFGPLLQSIEVEALQQVVMQLLESKKGTsvVKKRAVVAISMLAIYLTDEHLDEVIQRLTS 256
                 458889999999999999999999***999999999999987765555889999999999999998888888777765 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.07
     DUF3361  48 dtlsdeFikkiasivnks..aadasilqrslaiLesivlnsselyelvekevt..lesLiehLqssnqeiqtnalaLlnALllkadds 131
                 ++l+++++++++  ++++  +a+  +  +s + L++++l+  +   l +  v+  ++ Li  + ++++++ + al +l +L+   ++ 
  CCE28588.1 777 EQLDNAWVQEVCLELSTHlrKANRALRGSSASALKHLILSPAARDRLEKPTVEgvVSALIPAVTNADTHLLSPALLILASLVPDHSEV 864
                 6777777777777777776555566666777777777777765544444444444677777777777777777777777766544333 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.23
     DUF3361   86 sselyelvekevtlesLiehLqssnqeiqtnalaLlnA 123 
                  s+e ++ + k   ++ L+++Lq++++ei   a++ ln+
  CCE28588.1 1121 SDEAFDAMLKTTLISMLLTMLQDADTEIRRLAMTTLNS 1158
                  55555666666667777777777777777777776665 PP

>> RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.4   3.5e+02      10      36 ..      60      86 ..      56     111 .. 0.69
   2 ?   -1.2   0.0         3   2.6e+03      30      76 ..     192     230 ..     171     245 .. 0.65
   3 ?    7.2   0.0    0.0076       6.5       7      36 ..    1134    1163 ..    1130    1188 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.4
  RasGEF_N_2 10 lvnqLydqsrevvaaaleiLeeacddk 36
                +++ L dq+ ev++ a+++L   +++ 
  CCE28588.1 60 IIKTLDDQNGEVQNLAIKCLGPLVSKL 86
                6899****************8885553 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3
  RasGEF_N_2  30 eeacddkeslevlvelkpslqhl.geigslLllkllstssGfkylqel 76 
                  e         v+  + p lq +  e+ ++++++ll++++G + +++ 
  CCE28588.1 192 IE---------VVRCFGPLLQSIeVEALQQVVMQLLESKKGTSVVKKR 230
                 33.........3333445556663336677788888888888777655 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0076
  RasGEF_N_2    7 iellvnqLydqsrevvaaaleiLeeacddk 36  
                  i++l++ L+d ++e+++ a+  L++a ++k
  CCE28588.1 1134 ISMLLTMLQDADTEIRRLAMTTLNSAAHNK 1163
                  89***********************98776 PP

>> TTRAP  Putative tranposon-transfer assisting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.2     0.086        73      14      44 ..    1127    1156 ..    1124    1157 .. 0.86
   2 ?    5.9   0.0     0.014        12      16      59 ..    1224    1269 ..    1213    1272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.086
                  -SHHHHHHHHHHHSTTTS.-HHHHHHHHHHH CS
       TTRAP   14 egtRkelieelkaalkyleddelreLaestl 44  
                     ++ li+ l ++l++  d+e+r+La +tl
  CCE28588.1 1127 AMLKTTLISMLLTMLQDA-DTEIRRLAMTTL 1156
                  556899999999999999.********9998 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.014
                  HHHHHHHHHHHSTTTS..-HHHHHHHHHHHHHHTT--.HHHHHHHS CS
       TTRAP   16 tRkelieelkaalkyl.eddelreLaestlaKLkalt.Daefaele 59  
                  tR + i+  + ++  l +d+++r+L +  ++KL  ++ D++f  l+
  CCE28588.1 1224 TRINHIDFFDRIIAGLrDDNDIRQLCNLMVSKLIVIDpDETFRRLD 1269
                  67777888888889999****************9886577777665 PP

>> Proteasom_PSMB  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.042        36      79     172 ..       7     105 ..       2     117 .. 0.78
   2 ?   -1.4   0.1      0.74   6.3e+02     131     377 ..     219     256 ..     178     286 .. 0.51
   3 ?   -2.2   0.0       1.3   1.1e+03     299     361 ..     755     814 ..     752     827 .. 0.83
   4 ?   -2.8   0.1       1.9   1.6e+03     123     188 ..     829     899 ..     780     912 .. 0.72
   5 ?    5.5   0.1    0.0059       5.1      86     210 ..    1094    1241 ..    1037    1256 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.042
  Proteasom_PSMB  79 laedlkvvlleglshanpnvkalvLaeleRiveekegalellknee...lllliikalreedlsvaeeairllskllkq..eagleelkskLkal 168
                     +++++ ++l + l  ++p+ + + L +l    ++ +  +   + ++    + +iik l +++ +v + ai+ l  l+ +     +++l +kL++l
      CCE28588.1   7 VKSQHISALVQKLGDSDPDFRFMSLNDLLQLLQSAKPDILHHDYNTaarAVDGIIKTLDDQNGEVQNLAIKCLGPLVSKlpTSTIASLVDKLSSL 101
                     567899999999******************9999999777666555111456899999999************9999872234566777777776 PP

  Proteasom_PSMB 169 lkrn 172
                       +n
      CCE28588.1 102 KLKN 105
                     6555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.74
  Proteasom_PSMB 131 kalreedlsvaeeairllskllkqeagleelkskLkallkrndivRariYelavelakkSaealsivtellekllkeldgeDvLvqldalellte 225
                     +                                                                                              
      CCE28588.1 219 E---------------------------------------------------------------------------------------------- 219
                     2.............................................................................................. PP

  Proteasom_PSMB 226 lAegkhgleyleqkgvvdkiselierveedPlgelllpglvkFfgklavisplqvlegyPklleklfemlesedptilpvAldtlgvlassvegk 320
                                                                                                                    
      CCE28588.1   - -----------------------------------------------------------------------------------------------   -
                     ............................................................................................... PP

  Proteasom_PSMB 321 evLmfknsealektlkkigaaaksgsvelkkrlLdalsslf.elkteqateelleiae 377
                                          +k+g+  +kkr++ a+s+l  +l+ e+ +e + ++++
      CCE28588.1 220 ---------------------SKKGTSVVKKRAVVAISMLAiYLTDEHLDEVIQRLTS 256
                     .....................2334444444444444444202222222222222222 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.3
  Proteasom_PSMB 299 dptilpvAldtlgvlassvegkevLmfknsealektlkkigaaaksgsvelkkrlLdalsslf 361
                     ++t +++A+  + ++ass  g e+L   +++ ++++  +++ + ++++  l+  +  al+ l 
      CCE28588.1 755 NETTRLAAVRAVDNVASSATGSEQL---DNAWVQEVCLELSTHLRKANRALRGSSASALKHLI 814
                     5789999999999***********9...77888888888999999999999988888888775 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 1.9
  Proteasom_PSMB 123 eelllliikalreedlsvaeeairllskllkqeagl...eelkskLkallkr..ndivRariYelavelak 188
                     e ++++ i a+ + d++  ++a  +l+ l++ +  +   + l s+L +llk+   +iv  +i el+ ++ +
      CCE28588.1 829 EGVVSALIPAVTNADTHLLSPALLILASLVPDHSEVvvsQGLVSSLCQLLKTqfASIVLDQILELVAKIGE 899
                     55788888889999999999999999999986644311155688999999987778888888888877754 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.0059
  Proteasom_PSMB   86 vlleglshanpnvkalvLaeleRiveekegalellkneelllliikalreedlsvaeeairllskllkqea..gleel............... 161 
                       l+  l+   p ++ ++++ ++ +  e++ a + + + +l+++ +  l++ d++  + a   l   ++++   +l +l               
      CCE28588.1 1094 KLQSVLKNKSPGIRGMAVQAVRYTLPESDEAFDAMLKTTLISMLLTMLQDADTEIRRLAMTTLNSAAHNKPdlILPHLgelmpfvltesvikp 1186
                      5677788899999*99999999999999999************************99999999999988751144555666777777777777 PP

  Proteasom_PSMB  162 .......kskLkallkrndivRariYelavelakkSaealsivtellekllkeldg 210 
                                +k++++    vR ++Ye    l +   + ++ ++ ++++++  l +
      CCE28588.1 1187 elikevmLGPFKHMVDDGLEVRKSAYETLYALMETAFTRINHID-FFDRIIAGLRD 1241
                      77765555566666667777777777777777777777777666.77777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       973  (0.0542696); expected 358.6 (0.02)
Passed bias filter:                      742  (0.0413855); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.49
# Mc/sec: 8293.34
//
Query:       CCE28589.1  [L=527]
Description: related to geranylgeranyltransferase type I alpha subunit (RAM2) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-43  144.4  15.3    6.6e-10   38.4   0.2    5.4  5  PPTA      Protein prenyltransferase alpha subunit repeat
      0.003   18.0   0.0      0.015   15.8   0.0    2.1  2  TPR_19    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.087   13.6   1.0       0.56   11.0   0.3    2.7  3  CsgA      Minor curli fiber component A
       0.13   13.0   0.0       0.46   11.2   0.0    2.0  1  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PPTA  Protein prenyltransferase alpha subunit repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   1.4e-10   6.4e-07       2      27 ..     254     279 ..     253     280 .. 0.95
   2 !   27.1   2.6   5.2e-10   2.3e-06       1      28 []     288     315 ..     288     315 .. 0.95
   3 !   38.4   0.2   1.5e-13   6.6e-10       1      28 []     334     361 ..     334     361 .. 0.97
   4 !   29.2   0.1   1.2e-10   5.2e-07       1      27 [.     369     395 ..     369     396 .. 0.95
   5 !   26.4   0.0   8.6e-10   3.8e-06       1      28 []     422     449 ..     422     449 .. 0.96

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1.4e-10
                 HHHHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA   2 LeltekliekdpkNYsaWnyRrwlle 27 
                 L lte +i+++p +Y++W yR+ +++
  CCE28589.1 254 LRLTEHIISMNPAHYTVWLYRFKIVQ 279
                 89**********************98 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 5.2e-10
                 HHHHHHHHHHH-TT-CHHHHHHHHHHCH CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwllek 28 
                 E+++ ++++  + kNY++W++R+ l+++
  CCE28589.1 288 EINWLNEVAMSNLKNYQIWHHRQLLMDH 315
                 899**********************987 PP

  == domain 3  score: 38.4 bits;  conditional E-value: 1.5e-13
                 HHHHHHHHHHH-TT-CHHHHHHHHHHCH CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwllek 28 
                 E+++++ ++e+d+kNY++W+yR++l++k
  CCE28589.1 334 EIQFVNTMLEEDAKNYHVWSYRQYLVKK 361
                 99************************86 PP

  == domain 4  score: 29.2 bits;  conditional E-value: 1.2e-10
                 HHHHHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwlle 27 
                 EL+ t++lie+d +N+saW +R++l+ 
  CCE28589.1 369 ELAATQNLIEDDIRNNSAWAHRFFLIF 395
                 8999*********************96 PP

  == domain 5  score: 26.4 bits;  conditional E-value: 8.6e-10
                 HHHHHHHHHHH-TT-CHHHHHHHHHHCH CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwllek 28 
                 EL + +++i + p+N+s Wny r++l+k
  CCE28589.1 422 ELGYAKEKIVLAPQNQSSWNYLRGVLTK 449
                 9************************985 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.3     1e+04      12      28 ..     336     352 ..     335     355 .. 0.73
   2 !   15.8   0.0   3.3e-06     0.015      31      53 ..     484     506 ..     468     507 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.3
      TPR_19  12 alleqalqedpknaear 28 
                 ++   +l+ed+kn  ++
  CCE28589.1 336 QFVNTMLEEDAKNYHVW 352
                 56667888998887765 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3.3e-06
      TPR_19  31 LAeallalgqldeAealLdalpe 53 
                 LA+a++++g++++A+ +L++l+e
  CCE28589.1 484 LADAYVQSGDTAKAKVCLQRLWE 506
                 9*******************987 PP

>> CsgA  Minor curli fiber component A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.83   3.7e+03      46      55 ..     286     295 ..     235     304 .. 0.47
   2 ?   11.0   0.3   0.00013      0.56      33      60 ..     319     346 ..     285     351 .. 0.79
   3 ?   -2.4   0.0       1.9   8.5e+03      55      65 ..     418     428 ..     416     431 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.83
        CsgA  46 eeEiefLnki 55 
                  eEi++Ln++
  CCE28589.1 286 PEEINWLNEV 295
                 3455555555 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00013
        CsgA  33 eykseeefvkdLseeEiefLnkiLeeei 60 
                 + +se+e v +L + Ei+f+n++Lee+ 
  CCE28589.1 319 SIASEKETVAKLARTEIQFVNTMLEEDA 346
                 4589********************9975 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.9
        CsgA  55 iLeeeikyake 65 
                 ++++e+ yake
  CCE28589.1 418 VVDNELGYAKE 428
                 78899999987 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0001      0.46       2      29 ..     480     507 ..     479     509 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlike 29 
                 Al  la +y + gdt+kA+  l+rl ++
  CCE28589.1 480 ALEILADAYVQSGDTAKAKVCLQRLWEK 507
                 66679******77************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3778.23
//
Query:       CCE28590.1  [L=169]
Description: uncharacterized protein CPUR_02277 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00081   20.0   1.6     0.0089   16.6   1.6    2.1  1  NTF2      Nuclear transport factor 2 (NTF2) domain
      0.004   17.1   0.0     0.0091   15.9   0.0    1.5  2  Mtr2      Nuclear pore RNA shuttling protein Mtr2


Domain annotation for each model (and alignments):
>> NTF2  Nuclear transport factor 2 (NTF2) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.6   9.9e-07    0.0089       2     105 ..      17     143 ..      16     149 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.9e-07
                 HHHHHHHHHHHHHHHGGGGGGGGEEEEEEEEEETTE.....EEEESHHHHHHHHHHSSCSC...EEEEEEEEEEEE.................TSEGGG CS
        NTF2   2 akafvqqYYaaldagdregllalyaadaslltpegs.....spvkgreaIteffrslpftr...ielkittvdaqp.................deasls 75 
                 a+ fv++YY+al++ + + l+++y    s +t   +     s v    a+ + +++l + +   ++ + +++d++                  +++s+ 
  CCE28590.1  17 AEIFVNHYYQALNN-QSQ-LSNFYINSSSKYTIAADisingSVV----ATPAAYSTLLEGQgagVRYDMESLDVHVinpsskyaapkniqdntKSESSG 109
                 678***********.666.*****99999999888854544333....333333333333333335555555544444445555555555555334444 PP

                 CEEEEEEE..EEEEETTSCCE....EEEEEEEEEEE CS
        NTF2  76 tgvlvmvt..Gelkvddfkkr....rkfsqtfilap 105
                  +++++vt  G+  +  +  r      f+ tf+l+p
  CCE28590.1 110 ARMSLVVTtmGKIHFGKG--ReaarKMFTETFVLVP 143
                 444444441133333333..2235455777777776 PP

>> Mtr2  Nuclear pore RNA shuttling protein Mtr2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     1e-06    0.0091       6      80 ..      16      91 ..       7     111 .. 0.78
   2 ?   -1.8   0.0      0.28   2.5e+03      81     106 ..     113     141 ..      97     160 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1e-06
                HHHHHHHHHHHHHH--.-HCCHHHHHCCB-SSS-EEEETTEEESSHHHHHHHHHHHS--EEEEEEEEEEEEETTTS CS
        Mtr2  6 atetfvkkvlahLDeq.dvnkleqflqlFlkpqckivfngkPlaqaaaFlkiwlqsvvltqHaltalDfHvipgtg 80
                a+e+fv + +++L++q + ++   +        + i +ng  +a +aa+ +  + + + + +++ +lD+Hvi+ ++
  CCE28590.1 16 AAEIFVNHYYQALNNQsQLSNFYINSSSKYTIAADISINGSVVATPAAYSTLLEGQGAGVRYDMESLDVHVINPSS 91
                5889999999999943122232222222244568899***********************************9765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.28
                 EEEEEEEEEEEE...BTTSB-TT--BSB- CS
        Mtr2  81 tliinanckvrf...desGrdklGqdstl 106
                 +l++   +k++f    e  r    ++++l
  CCE28590.1 113 SLVVTTMGKIHFgkgREAARKMFTETFVL 141
                 56777778888843334444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1359.98
//
Query:       CCE28591.1  [L=672]
Description: probable METHIONYL-TRNA SYNTHETASE,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-93  313.8   0.6    7.9e-93  311.3   0.6    2.0  1  tRNA-synt_1g  tRNA synthetases class I (M)
    2.3e-22   79.0   2.5    1.6e-09   36.6   0.1    3.1  3  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    4.3e-11   42.7   0.0    5.3e-05   22.7   0.0    2.2  2  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
  ------ inclusion threshold ------
      0.024   13.6   0.0      0.059   12.3   0.0    1.8  2  tRNA-synt_1f  tRNA synthetases class I (K)


Domain annotation for each model (and alignments):
>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.3   0.6   1.8e-96   7.9e-93       1     390 [.      52     424 ..      52     425 .. 0.92

  Alignments for each domain:
  == domain 1  score: 311.3 bits;  conditional E-value: 1.8e-96
                   EEEEE--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHHH CS
  tRNA-synt_1g   1 vlvttalpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkygrttseehk 97 
                   +++tt+++Y+n+++H+Gh ++++ +D++ R+++ +g+e + ++gtDehG +++ +Aekegv+++++++++++++++l +  +i +d++ rtt+ +hk
    CCE28591.1  52 YYITTPIFYVNDAPHIGHFYTMVLGDVLKRWQQIKGNEAFLLTGTDEHGSKVQRAAEKEGVDVKDFCDTNSNKFRDLAAAGGILNDAFMRTTDPQHK 148
                   69*********************************************************************************************** PP

                   HHHHHHHHHHH....HTT-EEEEEEEEEEETTTTEEE-GGG-EE........-TTS-EE-TTSSB-E................EEE.EEEEEE-GGG CS
  tRNA-synt_1g  98 elvqeifkklk....ekgliyekeieqlycpkderflpdryvegtCPkckseeargdqceecgkkleptelinpksaisgskpevketehlffklsk 190
                   e+v+e++ +lk    e+  +y+++ +++y ++de f+p+ +v+             d + + gkk+        +s+ +gs+ e+ e+e +ff l k
    CCE28591.1 149 EAVSEFWLQLKhalpEHLGLYKGTHKGWYAVSDECFYPEGMVKT------------DIVPQTGKKIM-------VSVETGSEVEWVEEETWFFPLTK 226
                   ********998222234569*********************965............56677788887.......7777888888888********** PP

                   GHHHHHHHH.HH-TT..SHHHHHHHH.HHHHT----EE-E...SS-SSS-EETTECCEEE-HHHHHHHHHHHTTTTT-...TTSGGGG.G-.-S... CS
  tRNA-synt_1g 191 fekklkewieeeeke..leenvkkivkewlkegLkdlais...rdldwGipvPgaekkvlYVWldAligYisatkelakkkgeeekwkeyW.akdke 281
                   ++++l +++  e+++  ++ +  + v++w+k++L+dl+i+   ++l+wGip P+++++++YVW+dAl++Yi+  ++ +k ++++e     W a+   
    CCE28591.1 227 YKDRLLKFY-DENPHwiTPGHRLNEVRQWVKDNLQDLSITrpaSRLSWGIPDPEDDSQTIYVWVDALVNYITQAGYGSKWHSRSEGMG-IWpAD--- 318
                   *********.555564778889999***************776689*******************************97776666665.66244... PP

                   ...EEEEEGGGHHHHHTHHHHHHHHTT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-HHHHHHHHHHH CS
  tRNA-synt_1g 282 velvhfigkdiikFHtifwPaillgaelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfswedfvervNse 378
                      ++++gkdi++FH+i+wPa+l++ +l  p+++  h+++t++++K+SkS g+vv +  al+r d+d+lRYyl+++a  ++D+++s +++   + +e
    CCE28591.1 319 ---MQIVGKDILRFHAIYWPALLMALGLPPPRHLLCHNHWTMSNQKMSKSVGNVVNPFFALQRWDVDTLRYYLMRNAGLSRDMSYSNQQIAVVYMKE 412
                   ...89******************************************************************************************** PP

                   CCCHHHHHHHHH CS
  tRNA-synt_1g 379 LadklgnlvnRv 390
                   L +++gnl++R+
    CCE28591.1 413 LQANMGNLLHRI 424
                   ***********6 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   9.8e-13   4.4e-09      19     101 ..      46     126 ..      35     131 .. 0.86
   2 !    5.8   0.3   0.00077       3.5     364     430 ..     204     276 ..     195     279 .. 0.82
   3 !   36.6   0.1   3.5e-13   1.6e-09     484     601 ..     282     400 ..     277     401 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 9.8e-13
  tRNA-synt_1  19 ekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgreefr 101
                  + +kk++ ++ +  yv+ ++HiGh ++ +l d++ r++++kG+e+  ++G+D +G  ++ + ek+ g +  k+  +   ++fr
   CCE28591.1  46 SSSKKPYYITTPIFYVNDAPHIGHFYTMVLGDVLKRWQQIKGNEAFLLTGTDEHGSKVQRAAEKE-GVDV-KDFCDTNSNKFR 126
                  456999*******************************************************9998.5554.356666666665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.00077
  tRNA-synt_1 364 fcerskkpiiyrateqWfvrvkeladaalkave.kvqf.vpkskekryaswle.niqdWciSR...qrwWGhr 430
                  ++  ++  ++    e+Wf  +++ +d +lk  + + ++ +p  + ++  +w++ n qd  i R    + WG +
   CCE28591.1 204 VSVETGSEVEWVEEETWFFPLTKYKDRLLKFYDeNPHWiTPGHRLNEVRQWVKdNLQDLSITRpasRLSWGIP 276
                  566788999999******************9997666626888*********8358*****995555789976 PP

  == domain 3  score: 36.6 bits;  conditional E-value: 3.5e-13
  tRNA-synt_1 484 edvlDvWFsSgswpfstlgypee..dteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNvidpldvik 579
                  ++++ vW +     +++ gy+++   ++e    +padm + G Di+r+       l +al g  P +++l+h   + +  +KmSKs+gNv++p   ++
   CCE28591.1 282 SQTIYVWVDALVNYITQAGYGSKwhSRSEGMGIWPADMQIVGKDILRFHAIYWPALLMAL-GLPPPRHLLCHNHWTMS-NQKMSKSVGNVVNPFFALQ 377
                  566778999888888999999876567777789***************988888777776.66777899999876655.59***************** PP

  tRNA-synt_1 580 kygadalRltli.lsdvgrdinl 601
                  +  +d lR++l+ ++  +rd++ 
   CCE28591.1 378 RWDVDTLRYYLMrNAGLSRDMSY 400
                  ************99999999875 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     4e-07    0.0018      19      95 ..      61     137 ..      44     160 .. 0.82
   2 !   22.7   0.0   1.2e-08   5.3e-05     240     298 ..     348     407 ..     337     410 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4e-07
                   TTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---- CS
  tRNA-synt_1e  19 vydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkp 95 
                   v da h+Gh  ++v  D+l+r+ q +g +  ++    +   k+ + a++e+  vk+++++  ++f +  +a ++l+ 
    CCE28591.1  61 VNDAPHIGHFYTMVLGDVLKRWQQIKGNEAFLLTGTDEHGSKVQRAAEKEGVDVKDFCDTNSNKFRDLAAAGGILND 137
                   779************************9988887777778899999999****************998888887763 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1.2e-08
                   EEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS.-TTS-EEE-HHHHHH CS
  tRNA-synt_1e 240 yflhnghlkiegekmsksLknfitikdvlkkfdprqlRllllsa.hyrsqldfkeellee 298
                   + l ++h ++ ++kmsks++n++    +l+++d  +lR++l+ +    + + +++++++ 
    CCE28591.1 348 HLLCHNHWTMSNQKMSKSVGNVVNPFFALQRWDVDTLRYYLMRNaGLSRDMSYSNQQIAV 407
                   5666778899*****************************998651577788888888765 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.2   5.4e+03      37      64 ..      65      92 ..      64      98 .. 0.76
   2 ?   12.3   0.0   1.3e-05     0.059     259     318 ..     339     397 ..     309     446 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.2
  tRNA-synt_1f 37 iHiGnlrevltadlvaralrkrgeevrl 64
                  +HiG +  ++ +d++ r  + +g+e+ l
    CCE28591.1 65 PHIGHFYTMVLGDVLKRWQQIKGNEAFL 92
                  899*999999999988877777776655 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.3e-05
  tRNA-synt_1f 259 eilggeaPekvvYelillkggekmssSkGnvltledwlevaepevlrflilrrkPkkakk 318
                     lg ++P ++         ++kms+S Gnv+ +  +l+    ++lr++++r +   + +
    CCE28591.1 339 MALGLPPPRHLLCHNHWTMSNQKMSKSVGNVVNPFFALQRWDVDTLRYYLMR-NAGLSRD 397
                   6788999998877777777778*****************************9.5444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 4282.52
//
Query:       CCE28592.1  [L=212]
Description: probable METHIONYL-TRNA SYNTHETASE,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-15   55.6   0.1    1.4e-14   55.0   0.1    1.3  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
     0.0018   18.5   1.4     0.0021   18.3   0.2    1.8  2  Acetyltransf_1  Acetyltransferase (GNAT) family
     0.0032   17.4   0.1          3    7.9   0.0    2.6  3  FR47            FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   2.3e-18   1.4e-14      19     138 .]       1     158 [.       1     158 [. 0.85

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 2.3e-18
  Acetyltransf_3  19 rsdpevmry.lpepltleeaeewlerawaeeseeegygwaiv................lkdtgviGsvglrdleeedee..........aelgym 86 
                     ++dp+++++  +epltl+e++e +++ w++    ++++++++                + ++ + G+++++ + +e ++          +e++ m
      CCE28592.1   1 MKDPAIQEAtASEPLTLQEEYENQRS-WRA--SCDKLTFIVCeapargalaiiqagvaDAEEHMRGDINMFIYGDEFGApedetagqlrGEIDVM 92 
                     789****987777************6.765..468899999966666665555554332444489***9999999988899************** PP

  Acetyltransf_3  87 laps.fwgkGyateavralleyafeel.............glerlvavidkeNeaSirvleklGfe 138
                     +a++ +w+kGy++ av+ ll y+ +++             ++  l+++i++ N +S++++  lGf+
      CCE28592.1  93 VAEKdHWRKGYGRAAVETLLIYVRRNMegilkeygggekaKMAGLMVKIKEGNAGSRALFGGLGFR 158
                     **666******************888889999999999888889*********************6 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   3.5e-07    0.0021      55      94 ..      72     122 ..       9     127 .. 0.77
   2 ?   -2.9   0.1       1.3     8e+03       3      25 ..     177     198 ..     175     205 .. 0.57

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.5e-07
                     T.........TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT..TE CS
  Acetyltransf_1  55 d.........ekggvayieslaVspeyrgkGlGsaLlealeeraree..gi 94 
                     d           + +++i+ ++  +++++kG+G+a +e+l+ ++r++  gi
      CCE28592.1  72 DefgapedetAGQLRGEIDVMVAEKDHWRKGYGRAAVETLLIYVRRNmeGI 122
                     455555555545567889999999*********************997555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.3
                     HHHHHHHHHTHHHHHHHHHHHHH CS
  Acetyltransf_1   3 dlvellvesffppnedaseeefe 25 
                     d+ e lv+ +f ++e+ +e++++
      CCE28592.1 177 DV-EELVDGWFRTEETGDERRVY 198
                     55.56666667666666666633 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0011       6.7      21      47 ..      86     112 ..      70     123 .. 0.84
   2 !    7.9   0.0    0.0005         3      57      80 ..     137     160 ..     131     166 .. 0.84
   3 ?   -3.7   0.0         2   1.2e+04      69      78 ..     195     204 ..     193     208 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0011
                 TSSEEEEEE-GGG-SSSHHHHHHHHHH CS
        FR47  21 ggelgalqvlpehrrrGlgsrlvkala 47 
                  ge+  +  +++h r+G+g+  v+ l 
  CCE28592.1  86 RGEIDVMVAEKDHWRKGYGRAAVETLL 112
                 499999**************9998875 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0005
                 EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  57 vllvvvasNtpsirlyeklGfeki 80 
                 +++ ++++N  s++l+  lGf++ 
  CCE28592.1 137 LMVKIKEGNAGSRALFGGLGFRQT 160
                 688999****************97 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2
                 HHHHHHHT-E CS
        FR47  69 irlyeklGfe 78 
                 +r+ye + +e
  CCE28592.1 195 RRVYEEIRYE 204
                 6899998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1587.02
//
Query:       CCE28593.1  [L=884]
Description: related to ser/arg-related nuclear matrix protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.09   13.0   0.4        7.9    6.8   0.1    2.9  2  zinc_ribbon_9  zinc-ribbon


Domain annotation for each model (and alignments):
>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0    0.0064   1.1e+02      16      29 ..     572     584 ..     568     587 .. 0.66
   2 ?    6.8   0.1   0.00044       7.9       5      14 ..     678     687 ..     678     691 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0064
  zinc_ribbon_9  16 pdedsdvlCPhCgg 29 
                    p+++ ++ CP+C  
     CCE28593.1 572 PHTSFNI-CPSCYD 584
                    5555566.****54 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00044
  zinc_ribbon_9   5 ChqCdrfVsv 14 
                    C+qC+r+V++
     CCE28593.1 678 CYQCARTVEL 687
                    ********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 6481.10
//
Query:       CCE28594.1  [L=352]
Description: probable ribosomal protein RPL4A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-37  128.4   0.1    3.5e-37  128.0   0.1    1.2  1  Ribosomal_L4     Ribosomal protein L4/L1 family
    1.3e-27   95.6   0.9    1.3e-27   95.6   0.9    1.7  2  Ribos_L4_asso_C  60S ribosomal protein L4 C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.1   3.9e-41   3.5e-37       3     191 ..      23     267 ..      21     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 3.9e-41
                   E-HHHHSS---HHHHHHHHHHHHHSS-EE-----.-TTTSS---S-SS-SSSSSS---S-TT............STTSTT---SS---S.EEHHHHH CS
  Ribosomal_L4   3 LspkvFaapirrdlihravvaylanrrqgtastk.arsevsgsgrklwkQKGtGrARvgsir............spiargGgvahgpkperdystkl 86 
                   + p+vF +pir+d+++r+++ + +n+rq++a +  a++++s+  +++++  G++ AR+++++             +++r+G+++ ++k +r+++ k+
    CCE28594.1  23 V-PAVFTSPIRPDIVQRVHTGMAKNKRQPYAVSEkAGHQTSA--ESWGT--GRAVARIPRVSgggthragqaafGNMCRSGRMFAPTKIWRKWHVKV 114
                   5.99***************************9888*******..6****..********************************************** PP

                   HHHHHHHHHHHHHHHHHHTT-EEEES....---.-S...............S--HHHHHHHHHHTT-..........................TTSS CS
  Ribosomal_L4  87 nkKvrrlAlrsaLsakakqglllvvd....nleple...............esktkelvellkklgl..........................ksks 138
                   n+ ++r+A +saL+a a++ ll++++     +                     +t ++ +llk++g+                          ++++
    CCE28594.1 115 NQGQKRYATCSALAASAAAPLLMARGheimTV---AevplvvdsalfdagaFTRTAPALALLKAVGAgpdlekakyskklragkgklrgrrhrQRRG 208
                   **************************744422...1344556666665555555**********99999999999999999999999999999999* PP

                   EEEEES..SSSCHHHHHHTT-TTEEEEESTT--CHHHHHSSE....EEEEHHHHHHHHH CS
  Ribosomal_L4 139 vLivvs..ekdenlvlaarnlpgvevieveslnvydllkadk....vvitksaveklee 191
                   +L+v++   + ++lv+a+rn+pgve+ +v  ln+++l+++ +    +v+t +a++ l+e
    CCE28594.1 209 PLVVYNpeVDGKELVKAFRNIPGVETSPVSALNLLQLAPGGHlgrfIVWTSAAFKALDE 267
                   *****96524679*******************************************997 PP

>> Ribos_L4_asso_C  60S ribosomal protein L4 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       1.4   1.3e+04      27      46 ..     190     210 ..     188     211 .. 0.65
   2 !   95.6   0.9   1.5e-31   1.3e-27       2      71 ..     281     352 .]     280     352 .] 0.96

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.4
  Ribos_L4_asso_C  27 vlrpakkekkkkr.vqkkNPL 46 
                       lr+ k++ + +r  q++ PL
       CCE28594.1 190 KLRAGKGKLRGRRhRQRRGPL 210
                      567777765555557887777 PP

  == domain 2  score: 95.6 bits;  conditional E-value: 1.5e-31
  Ribos_L4_asso_C   2 gynLPrpkmtnaDlsRiinSdeiqsvlrpakkekkkkr..vqkkNPLknkqvmlrLNPyakvlrraallaqk 71 
                      ++ LP++++++aDl+R+inS+eiqs l+++k+e++++r  vqkkNPL+nkqvmlrLNPya v++++ +++q+
       CCE28594.1 281 DFFLPSNVVSQADLTRLINSSEIQSSLNAPKGEATTRRgaVQKKNPLRNKQVMLRLNPYATVFAKESQKKQQ 352
                      899*********************************999**************************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2568.17
//
Query:       CCE28595.1  [L=472]
Description: related to flavin-containing monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-34  119.8   0.0    1.2e-18   66.9   0.1    3.0  3  FMO-like       Flavin-binding monooxygenase-like
    3.1e-15   56.2   0.0      2e-14   53.5   0.0    2.0  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    8.8e-14   51.4   1.3    1.3e-06   27.9   0.0    3.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    9.5e-11   41.4   0.1    3.5e-08   33.0   0.0    2.8  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    2.4e-10   40.5   0.3     0.0045   16.6   0.2    4.1  4  DAO            FAD dependent oxidoreductase
      2e-09   37.0   0.3    2.9e-05   23.4   0.1    2.3  2  Thi4           Thi4 family
    5.8e-09   36.1   4.1    3.9e-06   26.9   0.3    4.4  4  NAD_binding_9  FAD-NAD(P)-binding
    1.1e-08   35.2   0.0    3.7e-06   27.1   0.0    2.4  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00017   22.1   0.0       0.39   11.3   0.0    2.5  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0011   18.3   0.1      0.033   13.4   0.0    2.3  2  FAD_binding_3  FAD binding domain
     0.0012   17.6   1.1      0.091   11.4   0.5    2.7  3  HI0933_like    HI0933-like protein
     0.0021   17.5   0.7       0.06   12.6   0.0    2.4  3  Amino_oxidase  Flavin containing amine oxidoreductase
     0.0033   16.9   0.0        1.2    8.6   0.0    2.3  2  Glu_dehyd_C    Glucose dehydrogenase C-terminus
     0.0099   15.9   0.0       0.19   11.8   0.0    2.3  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.016   14.3   0.3        4.1    6.4   0.0    2.2  2  Lycopene_cycl  Lycopene cyclase protein
      0.026   13.6   0.2       0.14   11.2   0.1    2.0  2  FAD_binding_2  FAD binding domain
      0.089   12.3   0.0       0.14   11.6   0.0    1.3  1  DUF4850        Domain of unknown function (DUF4850)
       0.14   11.5   0.0        1.2    8.5   0.0    2.0  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
       0.26   10.3   0.8        6.2    5.8   0.3    2.2  2  GIDA           Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   9.8e-06    0.0093       2      43 ..      12      55 ..      11      61 .. 0.86
   2 !   66.9   0.1   1.2e-21   1.2e-18      53     213 ..      91     259 ..      87     272 .. 0.79
   3 !   34.8   0.0   6.8e-12   6.4e-09     306     417 ..     285     396 ..     275     423 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.8e-06
    FMO-like  2 kkvaviGaGvsGlasikccleegl..eptcfersddiGGlwrfk 43
                k++aviGaG  Gla+ k    +g   + + fe+ +++GG+w+++
  CCE28595.1 12 KRIAVIGAGPCGLAAAKYLKAQGAfdKIVIFEQQAEVGGVWNYD 55
                9****************9988875334689***********996 PP

  == domain 2  score: 66.9 bits;  conditional E-value: 1.2e-21
    FMO-like  53 iyksvvsnsskemscfsdfplpedypnflhnsklleylklfakefdllkyiqfkttvcsvkkrpdf.stsGq....wevvtek..egkkesavfdavmv 144
                 +y  + +n  k ++ fsd  +p +   f  ++ +++y+ ++++++     i+f ++v+ v+ r +     Gq    w+v +++  +g + s+ fdav+v
  CCE28595.1  91 MYDKLHTNIPKTLMKFSDLDFPPEAWVFPSRQDVQKYIVQYSQDV--RDLIRFCSQVTRVQLREEAdGDEGQkrdvWQVNARSvvDGDESSETFDAVVV 187
                 799999***********************************9865..334556666655554433212334434459888764449************* PP

    FMO-like 145 ctGhhvnphlp.lesfpGiek.fkGqyfhsrdykepevfkgkrvlviGlGnsggdiavelsrtaeq.vllst 213
                   Gh+  p++p ++     +      ++hs+ y + ++f gk+ +v+G G sg dia +lsr ++   lls 
  CCE28595.1 188 ANGHYSTPFIPdVKNISSFHDaHPSVIIHSKLYHSADAFAGKKTIVVGNGPSGLDIAYQLSRVTKGpTLLSV 259
                 ***********43556665541456789**********************************8874245555 PP

  == domain 3  score: 34.8 bits;  conditional E-value: 6.8e-12
    FMO-like 306 tetsaifedgtveedidvvifatGytfafpfleeslvkveknkvs...lykkvfpanlekptlaiiGliqplGsilptvelqarwavrvlkGlkklpse 401
                 +e  + ++dg+ve d+d++if+tG+ f+ pfl    +++ +n +    ly+++f   +++ptl +  l++ +   +p +e qa  +  v      lp++
  CCE28595.1 285 NERGVRLKDGAVETDVDAIIFCTGFRFSLPFLGSLEKQIITNGACvhgLYQHLF--LIDHPTL-VFPLLNMRVVPFPLSEAQAAVISAVWSNNLALPPK 380
                 67788899***********************97766666666554223899998..5799*99.689******************************** PP

    FMO-like 402 kelleeitekkekkak 417
                 +++++   +++e+  +
  CCE28595.1 381 EDMVRWNRDAEEEAGD 396
                 ***9977777666544 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   2.1e-17     2e-14       1     247 [.      12     318 ..      12     331 .. 0.67

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 2.1e-17
                  CSEEEE--SHHHHHHHHHHHH..HTS-EEEEE....TTHCHHHCSHHH.HCHHHHHHHHHHHHH.................................. CS
                  xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx....xxxxxxxxxxxx.xxxxxxxxxxxxxxx.................................. RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaq..agakvtlve....legtclnggcll.skallgvaedaeias.................................. 57 
                  k+++viG+Gp Glaaa++l++  a  k++++e     +g + ++++++ s+ + ++       s                                  
   CCE28595.1  12 KRIAVIGAGPCGLAAAKYLKAqgAFDKIVIFEqqaeVGGVWNYDTVVPaSNPVPQT-------Spfyppdkpeckgrdgipifpspmydklhtnipkt 102
                  589******************54455888885555544444444444432233333.......3344444477779********************** PP

                  .......................HHHHCHHHHCCCCHC..CTCEEEEESC.EEEEETEEEC...............TCEEEEEESEEEE---..EEE- CS
                  .......................xxxxxxxxxxxxxxx..xxxxxxxxxx.xxxxxxxxxx...............xxxxxxxxxxxxxxxx..xxxx RF
  Pyr_redox_2  58 .......................evvkklnqgielllg..eevvkidpgk.kkvklekkke...............gdeekiaydklvlAtG..sspr 112
                                         + + +++q+++ l +  ++v+++   + ++       +               gde + ++d++v+A G  s+p+
   CCE28595.1 103 lmkfsdldfppeawvfpsrqdvqKYIVQYSQDVRDLIRfcSQVTRVQLREeADGDE----GqkrdvwqvnarsvvdGDESSETFDAVVVANGhySTPF 196
                  ****************9999888555555555555555443344444333122222....0223467777778888****************777999 PP

                  BCTCTTC.......TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEES CS
                  xxxxxxx......xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 113 dlgipGv......aenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaaleealekeGvevklg 203
                  +++++         + v+ + + ++sa+a+       k+++vvG+G+ G+++A +l+++ k  tl+               + ++ a + e v ++  
   CCE28595.1 197 IPDVKNIssfhdaHPSVIIHSKLYHSADAF-----AgKKTIVVGNGPSGLDIAYQLSRVTKGPTLLSV-------------KHATPAARLEHVGCREV 276
                  998887754444444444444444444444.....147779***************999776665554.............22222333334666666 PP

                  CEEEEEEETTEEEEEEETTSCE.EEESEEEE-S-EEES-HHCSHC CS
                  xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 204 tsvkeidgngeklevvledgee.idadlvvvavGvrpstelleek 247
                  +++ e+  n++   v l+dg +  d+d +++++G+r s ++l  +
   CCE28595.1 277 AEIDEFLVNER--GVRLKDGAVeTDVDAIIFCTGFRFSLPFL-GS 318
                  88888888887..45566666657888888888888887777.44 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   1.6e-06    0.0015       2      34 ..      16      49 ..      15      57 .. 0.82
   2 !   27.9   0.0   1.4e-09   1.3e-06     116     274 ..     173     316 ..     160     331 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.6e-06
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagl.edylilEkgnign 34
                 +iGaGP+Glaaa  lk  g  ++++i E+++ + 
   CCE28595.1 16 VIGAGPCGLAAAKYLKAQGAfDKIVIFEQQAEVG 49
                 8***************999768899999986554 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 1.4e-09
  Pyr_redox_3 116 vetsketyeAkkviiAtGefdkPnklnipGeek.......lvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdp 206
                  v+ ++++ + + v++A G ++ P  ++++  ++         +h++ +++++ +ag+k +V+G + S+ D+A++l r ++  t++  ++         
   CCE28595.1 173 VDGDESSETFDAVVVANGHYSTPFIPDVKNISSfhdahpsVIIHSKLYHSADAFAGKKTIVVGNGPSGLDIAYQLSRVTKGPTLLSVKHA-------- 262
                  555555556678**********9999988766432222223468889999***************************9998888877752........ PP

  Pyr_redox_3 207 syslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsfl 274
                        +   rle+      +   + ae++e   +e+   v+ +dg   +  d ++++tG++ +l fl
   CCE28595.1 263 ------TPAARLEH------VGCREVAEIDEFLVNERG--VRLKDGAVETDVDAIIFCTGFRFSLPFL 316
                  ......22345544......334455555555555554..3344444444556666667777666665 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.018        17       5      40 ..      14      49 ..      10      64 .. 0.79
   2 !   33.0   0.0   3.7e-11   3.5e-08      91     216 ..     117     253 ..     109     272 .. 0.80
   3 ?   -0.0   0.0       0.4   3.8e+02     326     342 .]     295     311 ..     286     311 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.018
  K_oxygenase  5 ligiGiGpsnLsLailleevkkelkalflerqpefa 40
                 ++ iG+Gp  L+ a  l+ + +  k++ +e+q e++
   CCE28595.1 14 IAVIGAGPCGLAAAKYLKAQGAFDKIVIFEQQAEVG 49
                 789***********999999977889999*999864 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 3.7e-11
  K_oxygenase  91 flpsRkefedYlrWvasqleeqvrfgeeveevepdee.....eee.elltveskd.aegeeeelearnlvlgvG..tepkiPevlekle....gkerv 175
                   +psR++ ++Y+   ++ + + +rf ++v++v+ +ee      ++ ++++v+ ++  +g+e++ +  ++v++ G  ++p iP+v +  +    + + +
   CCE28595.1 117 VFPSRQDVQKYIVQYSQDVRDLIRFCSQVTRVQLREEadgdeGQKrDVWQVNARSvVDGDESSETFDAVVVANGhySTPFIPDVKNISSfhdaHPSVI 214
                  589******************************999533333334699*****9999*****************8889****9855433435434677 PP

  K_oxygenase 176 vHsseylerkeellakkriaVvGsGqSaaeifedllrrqkk 216
                  +Hs+ y +      a+k+ +VvG G S+ +i+++l r  k 
   CCE28595.1 215 IHSKLYHSAD--AFAGKKTIVVGNGPSGLDIAYQLSRVTKG 253
                  8888777665..89999999**************9987554 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.4
  K_oxygenase 326 eetlevdavvlATGYrr 342
                  + +++vda++++TG+r+
   CCE28595.1 295 AVETDVDAIIFCTGFRF 311
                  56789**********95 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   4.7e-06    0.0045       2      35 ..      14      50 ..      13      54 .. 0.92
   2 !   10.7   0.0   0.00031      0.29     169     213 ..     145     200 ..     102     222 .. 0.62
   3 ?    4.9   0.0     0.018        17       2      21 ..     231     250 ..     230     269 .. 0.79
   4 ?    3.4   0.0     0.048        45     169     232 ..     276     345 ..     260     411 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.7e-06
                EEEECTSHHHHHHHHHHHHTT....EEEEESSSSTTSS CS
         DAO  2 vviiGGGiiGlstAyeLarrg....Vtllekgdiagsg 35
                +++iG+G  Gl++A +L ++g    ++++e++ ++g g
  CCE28595.1 14 IAVIGAGPCGLAAAKYLKAQGafdkIVIFEQQAEVG-G 50
                9****************9999999********9888.4 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00031
                 EEEE..EEEE.........TCEEEEE......EECTEEE..EEEEEEEE--GGGHH.HHHTTCTT CS
         DAO 169 vtgl..eeed.........gkvwgve......rttpgen..daadavVnaaGawsd.llgllkel 213
                 vt++  +  +          +vw+v             +  +++davV+a+G++s+ ++   +++
  CCE28595.1 145 VTRVqlR--EeadgdegqkRDVWQVNarsvvdG----DEssETFDAVVVANGHYSTpFI---PDV 200
                 3333112..112234445567999988764322....3222368***********9777...444 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.018
                 EEEECTSHHHHHHHHHHHHT CS
         DAO   2 vviiGGGiiGlstAyeLarr 21 
                  +++G G  Gl +Ay+L+r 
  CCE28595.1 231 TIVVGNGPSGLDIAYQLSRV 250
                 69***************873 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.048
                 EEEEEE..EETCEEEEEEECTEEE.EEEEEEEE--GGGHH..HHHTT.CTT...TSEEEEEEEEEEEEEECCT CS
         DAO 169 vtglee..edgkvwgverttpgen.daadavVnaaGawsd..llgll.kel...dlpispvrgqvlvlkplse 232
                 v +++e   +++  gv r ++g++ + +da++ ++G   +  +lg l k++      ++++  + + ++++++
  CCE28595.1 276 VAEIDEflVNER--GV-RLKDGAVeTDVDAIIFCTGFRFSlpFLGSLeKQIitnGACVHGLYQHLFLIDHPTL 345
                 333422222234..44.3333555456799******9887644455555555542445777777777765544 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   3.1e-08   2.9e-05      15      58 ..       9      52 ..       5      58 .. 0.82
   2 !   11.5   0.0   0.00014      0.13       7      39 ..     218     250 ..     212     259 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.1e-08
                HTEEEEEEE--SHHHHHHHHHHHHCTTS.-EEEEESSSS--TTTT CS
        Thi4 15 yaesDvvivGaGssGLtaayylakkpdl.kvailersvspGGGaw 58
                + +  ++++GaG++GL+aa+yl  +  + k++i+e++  +G G+w
  CCE28595.1  9 FHVKRIAVIGAGPCGLAAAKYLKAQGAFdKIVIFEQQAEVG-GVW 52
                5667899***************9995554899999987776.566 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00014
                 HHHHHHHHHTEEEEEEE--SHHHHHHHHHHHHC CS
        Thi4   7 ryfedllkyaesDvvivGaGssGLtaayylakk 39 
                 + ++  + +a    ++vG G+sGL  ay l++ 
  CCE28595.1 218 KLYHSADAFAGKKTIVVGNGPSGLDIAYQLSRV 250
                 5566778899999****************9974 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.3   4.2e-09   3.9e-06       1     155 [.      15     191 ..      15     192 .. 0.69
   2 ?    4.5   0.0     0.034        32       2      20 ..     233     251 ..     232     270 .. 0.82
   3 ?    2.3   0.0      0.16   1.5e+02     116     154 ..     267     308 ..     255     310 .. 0.68
   4 ?   -0.6   0.0       1.3   1.2e+03      67     109 ..     381     419 ..     359     437 .. 0.65

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 4.2e-09
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddp..................ptfaeWlrerga 78 
                    a++GaGp Gla+++ L a+   ++  +i +f+++    g+vw+ d    +    p+ ++s+f   +                  +   +  ++ ++
     CCE28595.1  15 AVIGAGPCGLAAAKYLKAQ---GAFDKIVIFEQQAEV-GGVWNYDT--VVPASNPVPQTSPFYPPDkpeckgrdgipifpspmyD---KLHTNIPK 101
                    89****************9...68899******9998.8******4..56666677777777544457***********974442...33333333 PP

  NAD_binding_9  79 ....leeaeel..dpddfvpRalyGrYlrdlfeellarl...pegvtvevhraevvdleera......dgqavlladgaslaadaVvLAlGh 155
                        +++  ++  +   f++R+ +++Y+ ++ +++ +     ++ ++v++ r+e+   e ++      + + v+  d++s ++daVv+A Gh
     CCE28595.1 102 tlmkFSD-LDFppEAWVFPSRQDVQKYIVQYSQDVRDLIrfcSQVTRVQL-REEADGDEGQKrdvwqvNARSVVDGDESSETFDAVVVANGH 191
                    4434222.3440045579**********9999988774422244444444.56665333333112222224677889999***********9 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.034
  NAD_binding_9   2 ivGaGprGlavlerLlara 20 
                    +vG Gp+Gl ++ +L +  
     CCE28595.1 233 VVGNGPSGLDIAYQLSRVT 251
                    8**************9876 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.16
  NAD_binding_9 116 tvevh.raevvdleera.dgqavlladgas.laadaVvLAlG 154
                    ++e++   ev +++e   +++ v+l+dga  +++da++ ++G
     CCE28595.1 267 RLEHVgCREVAEIDEFLvNERGVRLKDGAVeTDVDAIIFCTG 308
                    55555344666666643144578999997527*********9 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.3
  NAD_binding_9  67 ptfaeWlrergaleeaeeldpddfvpRalyGrYlrdlfeella 109
                    +++++W r+ ++    e+ d  +++p a  G Y+++l + +++
     CCE28595.1 381 EDMVRWNRDAEE----EAGDNLHVLPDAKDGLYMNHLHDWAMK 419
                    556666666553....233445555555556666666555554 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   3.9e-09   3.7e-06       1      35 [.      16      52 ..      16      65 .. 0.91
   2 ?    5.6   0.0      0.02        19       1      17 [.     233     249 ..     233     261 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 3.9e-09
                   EE--SHHHHHHHHHHHCCTE..EEEEE-SSSSSSGGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagf..dvlllekrdrlGGra 35
                   ++GaG  Gl+aA +L+ +g+  +++++e++  +GG +
     CCE28595.1 16 VIGAGPCGLAAAKYLKAQGAfdKIVIFEQQAEVGGVW 52
                   8*****************88899************76 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.02
                    EE--SHHHHHHHHHHHC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLak 17 
                    +vG G sGl +Ay L++
     CCE28595.1 233 VVGNGPSGLDIAYQLSR 249
                    8**************98 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00041      0.39       1      35 [.      13      49 ..      13      56 .. 0.85
   2 !    8.2   0.0    0.0039       3.6       2      29 ..     231     258 ..     230     268 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00041
                EEEEECSSHHHHHHHHHHHHTT..SEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg..kkVtvversdkll 35
                +++v+G+G  gl +A++l++ g  +k+ ++e + ++ 
  CCE28595.1 13 RIAVIGAGPCGLAAAKYLKAQGafDKIVIFEQQAEVG 49
                79*****************999666888888887765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0039
                 EEEECSSHHHHHHHHHHHHTTSEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvve 29 
                  +vvG G +gl+ A  l++  k  t++ 
  CCE28595.1 231 TIVVGNGPSGLDIAYQLSRVTKGPTLLS 258
                 79****************9999888765 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.5e-05     0.033       4      26 ..      14      36 ..      12      48 .. 0.82
   2 ?    2.3   0.0     0.083        78       4      22 ..     231     249 ..     229     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.5e-05
                   EEEE--SHHHHHHHHHHHHTTHH CS
  FAD_binding_3  4 VlIVGaGpaGlmlallLseaGvr 26
                   ++++GaGp+Gl +a+ L+ +G  
     CCE28595.1 14 IAVIGAGPCGLAAAKYLKAQGAF 36
                   689*****************974 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.083
                    EEEE--SHHHHHHHHHHHH CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLse 22 
                    +++VG Gp+Gl  a  Ls+
     CCE28595.1 231 TIVVGNGPSGLDIAYQLSR 249
                    78*********99999987 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.5   9.7e-05     0.091       2      36 ..      13      49 ..      12      50 .. 0.84
   2 ?   -2.9   0.0       2.2     2e+03     145     168 ..     173     195 ..     129     197 .. 0.66
   3 ?    3.7   0.0     0.022        20       2      24 ..     230     252 ..     229     273 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.7e-05
                 SEEEE--SHHHHHHHHHHHHTT-..-EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgk..rVlllekakklg 36
                 +++viG+G+ Gl aA  ++++g+  +++++e++ ++g
   CCE28595.1 13 RIAVIGAGPCGLAAAKYLKAQGAfdKIVIFEQQAEVG 49
                 689************9987777434999999998877 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.2
                  EEE.TTEEEEESEEEE----SS-G CS
  HI0933_like 145 vktkseeeleadklvlAtGGlSiP 168
                  v+  +e++ + d++v+A G  S P
   CCE28595.1 173 VDG-DESSETFDAVVVANGHYSTP 195
                  333.55666789999999999988 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.022
                  SEEEE--SHHHHHHHHHHHHTT- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgk 24 
                  ++iv+G G++Gl  A ++++  k
   CCE28595.1 230 KTIVVGNGPSGLDIAYQLSRVTK 252
                  78**********99999977655 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   6.4e-05      0.06       2      28 ..      22      50 ..      21      55 .. 0.95
   2 ?    2.6   0.2      0.07        66     220     259 ..     134     188 ..     121     200 .. 0.70
   3 ?   -3.7   0.0       5.9   5.5e+03     231     260 ..     276     307 ..     274     309 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.4e-05
                   HHHHHHHHHHHTT..EEEEEEESSSSSBT CS
  Amino_oxidase  2 aGLaaArqLlsaG..fdVtvlEardrvGG 28
                    GLaaA++L+++G  ++++++E +  vGG
     CCE28595.1 22 CGLAAAKYLKAQGafDKIVIFEQQAEVGG 50
                   6***************************9 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.07
                    TTTEEEETSEEEEEEEE.......ETTCEEEEETTSTEE........EESEEEE- CS
  Amino_oxidase 220 lrgldirlntrVkeikr.......egdgvtvtledgevv........eaDaVvvT 259
                      ++ ir+ + V++++        eg +  v+ ++ ++v        ++DaVvv+
     CCE28595.1 134 DVRDLIRFCSQVTRVQLreeadgdEGQKRDVWQVNARSVvdgdesseTFDAVVVA 188
                    56677999999999999997764444446666665554455555588*******9 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5.9
                    EEEEEE.ETTCEEEEETTSTEE.EESEEEE-S CS
  Amino_oxidase 231 Vkeikr.egdgvtvtledgevv.eaDaVvvTv 260
                    V ei+    ++ +v+l+dg v  ++Da++ ++
     CCE28595.1 276 VAEIDEfLVNERGVRLKDGAVEtDVDAIIFCT 307
                    67777776677788889999999999999765 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0012       1.2      29      66 ..       9      45 ..       3      50 .. 0.84
   2 !    6.0   0.0    0.0079       7.4      25     110 ..     222     309 ..     213     335 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
  Glu_dehyd_C 29 wepesalvlGaGslGLLalalleaeerglervyvlgrr 66
                 ++ ++  v+GaG+ GL a+  l+a + +++++ +++++
   CCE28595.1  9 FHVKRIAVIGAGPCGLAAAKYLKA-QGAFDKIVIFEQQ 45
                 5667889***************97.7999999888766 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0079
  Glu_dehyd_C  25 safewepesalvlGaGslGLLalalleaeerglerv...yvlgrrdrpdptidlveelGatYvdsretpvdeipeaseemdlvvEaTGs 110
                  sa  +  ++++v+G+G+ GL  + +l+  ++g + +   + + +   ++   + v+e++   v++r   +++  ++++++d ++ +TG 
   CCE28595.1 222 SADAFAGKKTIVVGNGPSGLDIAYQLSRVTKGPTLLsvkHATPAARLEHVGCREVAEIDEFLVNERGVRLKDG-AVETDVDAIIFCTGF 309
                  5556788999**********99899987777654330013333444455666778888888999888888887.788899999999985 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0    0.0002      0.19       9      42 ..       8      42 ..       3      48 .. 0.82
   2 ?    1.3   0.0      0.34   3.2e+02       8      32 ..     224     248 ..     218     259 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
                  ..TT-EEEEES-SHHHHHHHHHHHCCT-.CEEEEE CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakgv.kkvvva 42
                  s++ k++ +iGaG  +  +ak+L a+g+ +k+v++
    CCE28595.1  8 SFHVKRIAVIGAGPCGLAAAKYLKAQGAfDKIVIF 42
                  67889********************9762667776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.34
                   S..TT-EEEEES-SHHHHHHHHHHH CS
  Shikimate_DH   8 eslkekkvlliGaGemaelvakhLl 32 
                   + +++kk +++G+G  +  +a +L+
    CCE28595.1 224 DAFAGKKTIVVGNGPSGLDIAYQLS 248
                   57889*********99999998886 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0064         6       2      34 ..      14      46 ..      13      56 .. 0.79
   2 ?    6.4   0.0    0.0043       4.1       3      31 ..     232     260 ..     231     296 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0064
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieasp 34
                   ++viGaGp gl+ A+ l ++ +  k+v+ e  +
     CCE28595.1 14 IAVIGAGPCGLAAAKYLKAQGAFDKIVIFEQQA 46
                   79*************997777766777776655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0043
  Lycopene_cycl   3 vviGaGpAglslAarlteakpglkvvlie 31 
                    +v+G Gp gl +A +l +  +g+ ++++ 
     CCE28595.1 232 IVVGNGPSGLDIAYQLSRVTKGPTLLSVK 260
                    89**************9999999888884 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00015      0.14       2      36 ..      14      50 ..      13      56 .. 0.91
   2 ?   -0.8   0.0      0.64     6e+02       3      20 ..     232     249 ..     230     262 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                   EEEE--SHHHHHHHHHHHHTTT..-EEEEESSSGGGS CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGl..kvavvekeqefgg 36
                   + ViG+G  GLaAA  ++ +G+  k+++ e+  e+gg
     CCE28595.1 14 IAVIGAGPCGLAAAKYLKAQGAfdKIVIFEQQAEVGG 50
                   68*****************999999999999999887 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.64
                    EEE--SHHHHHHHHHHHH CS
  FAD_binding_2   3 iViGsGlAGLaAAleaae 20 
                    iV+G G +GL  A+++++
     CCE28595.1 232 IVVGNGPSGLDIAYQLSR 249
                    9************99876 PP

>> DUF4850  Domain of unknown function (DUF4850)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.14       2      89 ..     122     208 ..     121     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
     DUF4850   2 vevpvyqvkaengvddeliklctPat.lsfkykLtaeeakrlklyavpeegvvLvPksWqvldadvGanGsvsfvlsPddgkqaisyyd 89 
                 ++v  y v++ ++v d li++c+ +t ++ +     +e ++ +++ v  + vv   +s + +da+v anG +s  + Pd  k+  s++d
  CCE28595.1 122 QDVQKYIVQYSQDVRD-LIRFCSQVTrVQLREEADGDEGQKRDVWQVNARSVVDGDESSETFDAVVVANGHYSTPFIPDV-KNISSFHD 208
                 6888999999999975.99***998735667777788999**********************************999998.55555555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0013       1.2      32      65 ..       7      42 ..       2      57 .. 0.82
   2 ?    0.4   0.0      0.39   3.7e+02      29      89 ..     221     283 ..     200     289 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0013
                  S-GTTSEEEEES-SHHHHHHHHHHHHTT-..EEEEE CS
  2-Hacid_dh_C 32 kelsgktvGiiGlGrIGqavakrlkafgm..kviay 65
                  k+ + k++++iG+G  G a+ak+lka g+  k++++
    CCE28595.1  7 KSFHVKRIAVIGAGPCGLAAAKYLKAQGAfdKIVIF 42
                  677889*******************99886556555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.39
                   GSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTC.EECSHHHHH CS
  2-Hacid_dh_C  29 llgkelsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgv.elvsleell 89 
                   ++    +gk+  ++G G  G  +a  l+ +     +   ++ ++ ++ e++g+ e+++++e+l
    CCE28595.1 221 HSADAFAGKKTIVVGNGPSGLDIAYQLSRVTKgPTLLSVKHATPAARLEHVGCrEVAEIDEFL 283
                   5566789999*************9999955442444444444455568888886666888876 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3    0.0066       6.2       2      24 ..      14      36 ..      13      57 .. 0.83
   2 ?    2.7   0.0     0.055        52       2      28 ..     231     258 ..     230     276 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0066
                EEEE-SSHHHHHHHHHHHHTT-- CS
        GIDA  2 viViGgGhAGceAAlaaarlGak 24
                + ViG+G  G++AA  ++  Ga 
  CCE28595.1 14 IAVIGAGPCGLAAAKYLKAQGAF 36
                78************999999874 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.055
                 EEEE-SSHHHHHHHHHHHHTT-.-EEEE CS
        GIDA   2 viViGgGhAGceAAlaaarlGa.kvlLi 28 
                  iV+G G +G+  A++++r    ++lL 
  CCE28595.1 231 TIVVGNGPSGLDIAYQLSRVTKgPTLLS 258
                 69****************9765144444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 3118.32
//
Query:       CCE28596.1  [L=2097]
Description: uncharacterized protein CPUR_02283 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-13   49.8   0.0    5.1e-13   49.1   0.0    1.4  1  POT1      Telomeric single stranded DNA binding POT1/CDC13


Domain annotation for each model (and alignments):
>> POT1  Telomeric single stranded DNA binding POT1/CDC13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   2.9e-17   5.1e-13       1     141 [.    1938    2073 ..    1938    2075 .. 0.92

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 2.9e-17
                  CCCHHHHT.CTTEEEEEEEEEEEEEECCC...SCCEEEEECCCCCTTTSCCHCTTTEEEE.EEEECCCCCCCCGGCCCCEEECCCCEEEESTTSCEC CS
        POT1    1 fvdldkae.aekkvvnviGvVidasfpkk...tggsdyvctfkivDpsknkgdendglrv.vlFsknfedLpivkkvgdiirlhraklqsyngepqg 92  
                  f++l+++  +++k+ +++++  ++++p     +g +dy+  ++++Dps     +  g+++ ++F+++  +Lp v   gd+++l+r+++ s++g+  g
  CCE28596.1 1938 FIPLRTLRaSLHKIADIFAIATSTTPPPSrpkHGPRDYMLELTLTDPS----IAPTGITIgHIFRPHQTSLPMV-HAGDVLLLRRVQVVSMKGRGWG 2029
                  56788888899999*********999876689****************....7788888769************.********************** PP

                  CSEEEEEEECCCTTSCEEEEECCCCCSTSTTCCCCSHCCHHHHHHHHHH CS
        POT1   93 lanigfssswalFngnlnailletppilsskffelskeekkylkdlrkw 141 
                  +  ++ s  wa+F++n+    + +p+i ++ ++e+s++e +++  lrkw
  CCE28596.1 2030 VRATDASA-WAVFEKNDP---EMLPQIRGP-PVEVSADEVAFAAGLRKW 2073
                  *****996.*******99...899999999.****************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2097 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1048  (0.0584528); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.10u 0.40s 00:00:02.50 Elapsed: 00:00:00.59
# Mc/sec: 10794.38
//
Query:       CCE28597.1  [L=1096]
Description: probable phosphoinositide-specific phospholipase C [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-60  202.6   0.0    3.5e-60  201.8   0.0    1.4  1  PI-PLC-X      Phosphatidylinositol-specific phospholipase C, 
    3.1e-42  143.5   0.0    9.8e-42  141.9   0.0    2.0  1  PI-PLC-Y      Phosphatidylinositol-specific phospholipase C, 
      8e-06   26.1   0.0    2.3e-05   24.6   0.0    1.8  1  C2            C2 domain
    0.00024   21.5   0.1      0.004   17.6   0.0    2.5  2  EF-hand_like  Phosphoinositide-specific phospholipase C, efha
  ------ inclusion threshold ------
      0.014   16.0   0.8       0.45   11.0   0.5    3.2  2  PH_12         Pleckstrin homology domain
      0.026   15.0   0.1      0.075   13.5   0.1    1.8  1  EF-hand_7     EF-hand domain pair


Domain annotation for each model (and alignments):
>> PI-PLC-X  Phosphatidylinositol-specific phospholipase C, X domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8   0.0   1.2e-63   3.5e-60       2     145 .]     505     647 ..     504     647 .. 0.99

  Alignments for each domain:
  == domain 1  score: 201.8 bits;  conditional E-value: 1.2e-63
                 EEEEETTTTTTS-SHHHHHTHHHH---SS-HHHHHHTT--EEEEEE-...TT.SEEEETTEEE.EEEHHHHHHHHHHHHHHSTT--EEEEEEETTT-TH CS
    PI-PLC-X   2 saPlshyfissshntyltgnqlssessveayrnaLlrGcRcvEidvwdgedeepvvlhgytltkkikfrdvleaikdyafktselPvivsLevhcsaeq 100
                 ++P+++yfissshntyl g+q+ ++ssve y++aL +GcRcvE+d+wdg+d+ p+v+hg+tlt+ i+f++v+ +i++yaf++s++P+ +sLevhcs++q
  CCE28597.1 505 DRPMNEYFISSSHNTYLLGRQVAGHSSVEGYIRALAQGCRCVEVDCWDGSDGYPQVVHGRTLTSAISFKEVMTTINKYAFTKSSFPLWISLEVHCSPSQ 603
                 78************************************************************************************************* PP

                 HHHHHHHHHHHGGGGB-EEETT-.------BCCCCTT-EEEEE.. CS
    PI-PLC-X 101 qekmaeilkeifgdlLleeplekeeskelpspeelkgKilikvkk 145
                 q+ m++i+ke+fg++L++e+l+  +s++lpsp el ++ilikvkk
  CCE28597.1 604 QALMVDIMKEAFGHRLVTERLDP-SSEKLPSPSELMERILIKVKK 647
                 **********************7.9******************96 PP

>> PI-PLC-Y  Phosphatidylinositol-specific phospholipase C, Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.9   0.0   3.3e-45   9.8e-42       2     114 ..     755     869 ..     754     870 .. 0.93

  Alignments for each domain:
  == domain 1  score: 141.9 bits;  conditional E-value: 3.3e-45
    PI-PLC-Y   2 sdlvvytqsvkfksfekpeakkpnhvfslsesklkkllekeeekk.lvkhnrrhlmRvyPkgtrvdssNlnpvefWnvGvqmvAlnwqtldegmqlnea 99 
                  +l+vy+ +vkf ++++p ak++nh+fs+ es+++k+++++++k  l  hn+r+lmRvyP+g+r++ssN++p+ +W++Gv+m+Alnwqt+d gmqln+a
  CCE28597.1 755 GALGVYCAGVKFAGLDDPAAKAFNHIFSFMESSFAKHTRTKDAKMaLDIHNMRYLMRVYPDGLRLSSSNFDPLIYWRRGVHMAALNWQTFDLGMQLNNA 853
                 579**********************************94444444599*************************************************** PP

    PI-PLC-Y 100 lFa.engscGYvlKPe 114
                 +F+  ++++GYvlKP 
  CCE28597.1 854 MFQgGTDESGYVLKPP 869
                 ***88899*******6 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   7.6e-09   2.3e-05       3      68 ..     895     984 ..     893    1018 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 7.6e-09
                 EEEEEEEEESSSSSST...TSSCEEEEEEEE....................ECEEEEEE-SC.SSSSSSEE.EEEEEEEESCHTTSEEEEE CS
          C2   3 levtvieAknLpnkdk...kgssdpyvkvsl....................dgkqkakTrvi.knslnPvW.nekftfevaeleeakLeve 68 
                 ++v v++A++L +       +s+dpyv+v++                    d++ k++T+v+ +n +nP + n kf+f ++  ++ +L + 
  CCE28597.1 895 FSVDVLSAQQLMRPANlpaHKSMDPYVEVEVfhandkrdkkevgsglnhafDSALKFQTDVVrENGFNPMFsNGKFKFTLTT-KHPELIFV 984
                 6899*******65533477889**************************************996777*****77******999.88888775 PP

>> EF-hand_like  Phosphoinositide-specific phospholipase C, efhand-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.3e-06     0.004       2      47 ..     398     444 ..     397     464 .. 0.82
   2 ?    0.7   0.0      0.25   7.3e+02      18      40 ..     471     493 ..     468     498 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.3e-06
  EF-hand_like   2 YkiLtqreeideifqeyskd.geklslkelveFLreeQkeedaseel 47 
                    +++ qr e+++i +e++++ ++ l+  e+ +FLreeQ e  +++ +
    CCE28597.1 398 VRLMRQRPEVQRIIREIASKpDKGLTFGEFATFLREEQGEAVDATTT 444
                   57889*********9986652778***************98555444 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.25
  EF-hand_like  18 yskdgeklslkelveFLreeQke 40 
                   +s+d   +s + +v FL ++Q+ 
    CCE28597.1 471 LSQDVTYMSEAAFVGFLASKQNA 493
                   5889999************9975 PP

>> PH_12  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   0.00015      0.45       8     132 ..     201     310 ..     200     312 .. 0.75
   2 ?    0.0   0.0      0.38   1.1e+03      39      83 ..     330     373 ..     326     396 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
       PH_12   8 cLleGawfpkpgesgkrekkkwrfvkLspnrkvLhygdfeekspqdpsleeltek.idlsdisevksgkeaphskesgksssslskksssklsfslitl 105
                 +L++G+w++k  +s+k++           nr +L y+   +k +      + + k + + di+e++ g+++++ +++ +     + +    + fs++++
  CCE28597.1 201 QLQQGTWLRK--MSKKKN---------RSNRICLVYERETNKLTW---DRNRPLKfLHVDDIREIRLGTDIQQYAREYN-----APERDRLTWFSILYT 280
                 6888888888..333333.........247778888875555553...233444569**************99998875.....666777777888888 PP

       PH_12 106 ...skekellelvasseseaaeWlDGLsmL 132
                    +++++l++l+a+s ++ + W++ L++ 
  CCE28597.1 281 mpdKSKTKLMHLIADSIETTHLWVNFLEAM 310
                 899999*****************9987765 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.38
       PH_12  39 kvLhygdfeekspqdpsleeltekidlsdisevksgkeaphskes 83 
                 +  +y+++++++  +p  e+ +e +d++ + +v ++ ++ +s+++
  CCE28597.1 330 RQFWYKEMSKQFGDRPRTED-EEELDIAGVMRVCQNLHIYSSQST 373
                 67899**9999997666655.678999999999999887666654 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.5e-05     0.075       4      70 ..     374     431 ..     371     432 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 l+  F++ D++++  l+ +e+ +++r        +    + e++++++e+ +  d  ++f EF ++ 
  CCE28597.1 374 LQANFRLADSRHRDALNFTEFFDFVR-------LMRQ--RPEVQRIIREIASKPDKGLTFGEFATFL 431
                 5666****************777998.......4444..3589********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1096 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 7886.14
//
Query:       CCE28598.1  [L=22]
Description: uncharacterized protein CPUR_02285 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (22 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 170.55
//
Query:       CCE28599.1  [L=19]
Description: uncharacterized protein CPUR_02286 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (19 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                       65  (0.00362541); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 156.86
//
Query:       CCE28600.1  [L=874]
Description: uncharacterized protein CPUR_02287 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-10   39.6   4.8    2.5e-10   39.6   4.8    1.8  2  Zw10          Centromere/kinetochore Zw10
  ------ inclusion threshold ------
      0.029   14.0   0.7       0.29   10.8   0.0    2.2  2  Helicase_C_4  C-terminal domain on Strawberry notch homologue
        4.9    7.8   9.0         17    6.1   2.2    3.9  4  Com_YlbF      Control of competence regulator ComK, YlbF/YmcA


Domain annotation for each model (and alignments):
>> Zw10  Centromere/kinetochore Zw10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   4.8   4.2e-14   2.5e-10      11     361 ..      37     360 ..      31     368 .. 0.78
   2 ?   -3.4   0.0      0.44   2.6e+03     522     534 ..     634     646 ..     630     679 .. 0.57

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 4.2e-14
        Zw10  11 dlekkisklekkveeikeevskmivkkYs....eflelsssaeellerveslskeidalkkkveneieqdlkaaveelaelkqqlkekevvlellealk 105
                 dl+ +i+ le+   ++  ev  +i+++ +          +  +e + r++ ++++i   ++  e +  +++++a e++  l+++++  +++  +l ++k
  CCE28600.1  37 DLQPTIEALEEAKLNLEREVH-TINEETKdqvsSWARHAKALQEDIIRSKTIANDIVRQSEAPEVSG-EAIEDAEEKVQFLNREVQYSQQIQTVLAKIK 133
                 666666666666666666654.344433310004455555556667788888888876666544444.57999************************** PP

        Zw10 106 kieealeelkealknkaflvaadlleelkslldlekvekafqlkilkalrkelsvlsenlqykLgeewdrlvvwklpsskelssaksflkvklklskee 204
                 +++e+l +++ a + ++ l+a  lle+  + ld   v k++   i+k l      l+  + ++    w+ lv +++   k        + ++  l  ++
  CCE28600.1 134 GLDELLTQVEAAQNDGRVLEALRLLEQSWNALDEVGVSKTCR--IVKILDHRAFALKASIHEVFTLLWKELVHFNVEDGK--------VTIRASLPAGG 222
                 **********************************99998876..45667777788888999999999*************........88888887777 PP

        Zw10 205 seqkllsevleAlavlGeleeklklfgqvllkvilkplvlspslvav.vedqeeeitlrlessqetklekvepsevYskvlevlevllskLldvnvsse 302
                  +   lse ++Al+   e +e+++++   l   i+ p   +    ++ v  +e e+ l+ +s+          s v + +l  l+v+l+  +   +  +
  CCE28600.1 223 MA---LSEAVIALKAYKETDERMEQLWRNLNGAIVSPRMDKTRQTQSgVTVNEDELALSGQSD----------SSV-ESLLSDLQVILAFVS---Q--K 302
                 77...*********9999999998888887777766665555444444555555555554444..........566.779999999976433...3..3 PP

        Zw10 303 lkkaslleilGeliweelseliikdcLvksiPenssklekyqevieqteeFeeaLkele 361
                  ++ +ll+ lGe++  +l   +i++ L +++P   ++++++q + ++++ F  aL++ +
  CCE28600.1 303 VPE-ELLSGLGEFMMVDLIPRLIQQWLNPAVPSSLKDMARFQAITQSVQTFCGALETNG 360
                 333.899********************************************99998765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.44
        Zw10 522 hNnCmYiahlllt 534
                 +N+ mY+a+ l  
  CCE28600.1 634 YNDAMYMAEQLTK 646
                 5666666655543 PP

>> Helicase_C_4  C-terminal domain on Strawberry notch homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.04   2.4e+02     205     265 ..      88     150 ..      35     156 .. 0.54
   2 ?   10.8   0.0   4.9e-05      0.29     214     271 ..     655     718 ..     609     719 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.04
  Helicase_C_4 205 svgllkaeka..leaealekdlskvskfLnRllglevelQnalfkyf.tetleaeiekakkegk 265
                      ++++++a  ++ e + +d+++  +fLnR +  + ++Q +l k+   + l +++e+a+++g+
    CCE28600.1  88 ANDIVRQSEApeVSGE-AIEDAEEKVQFLNREVQYSQQIQTVLAKIKgLDELLTQVEAAQNDGR 150
                   2222222222322222.3346677779*************999876424666677777777776 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4.9e-05
  Helicase_C_4 214 a......leaealekdlskvskfLnRllglevelQnalfkyftetleaeiekakkegkydegie 271
                   +      +++  l++d++++++f nR  + e++lQ ++++ +    ++++++  ++g  + gi+
    CCE28600.1 655 EdlparaKTMLRLDNDIKTLENFANRSYANEMTLQRTVLQDLLGSSQSIVQQDDAAGAIEAGIA 718
                   234444456667899***********************************************96 PP

>> Com_YlbF  Control of competence regulator ComK, YlbF/YmcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.026   1.6e+02      71     104 ..      34      67 ..      24      68 .. 0.88
   2 ?    6.1   2.2    0.0028        17      48      97 ..      97     143 ..      71     148 .. 0.75
   3 ?   -1.5   0.0      0.65   3.9e+03      80     101 ..     233     254 ..     228     256 .. 0.78
   4 ?   -2.0   0.0       0.9   5.4e+03      25      43 ..     848     866 ..     836     869 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.026
                 HHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Com_YlbF  71 eeldknplvkeyleaeqelnellqevnkiiaeai 104
                 +e+d +p+++++ ea+ +l++ ++ +n+   +++
  CCE28600.1  34 SEIDLQPTIEALEEAKLNLEREVHTINEETKDQV 67 
                 799***********************99766665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0028
                 HHHHHHTT----HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH CS
    Com_YlbF  48 lqekqmkgeelkeeekkelqelkeeldknplvkeyleaeqelnellqevn 97 
                 + e   +ge+++++e+ ++q l +e++  ++++  l++ + l+ell +v 
  CCE28600.1  97 APE--VSGEAIEDAEE-KVQFLNREVQYSQQIQTVLAKIKGLDELLTQVE 143
                 222..24688899999.******************************996 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.65
                 HHHHHHHHHHHHHHHHHHHHHH CS
    Com_YlbF  80 keyleaeqelnellqevnkiia 101
                 k+y+e  +++++l   +n +i 
  CCE28600.1 233 KAYKETDERMEQLWRNLNGAIV 254
                 7888888888888888887775 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.9
                 HHHHHCSHHHHHHHHHHHH CS
    Com_YlbF  25 eealeedeelqklikefkk 43 
                 ++ +e ++  +++i+e+++
  CCE28600.1 848 QASFEDNPRTRQMIREIEQ 866
                 5667888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 5965.27
//
Query:       CCE28601.1  [L=1053]
Description: related to metalloprotease 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-19   69.8   0.0    1.2e-13   51.4   0.0    4.1  4  Peptidase_M16_C  Peptidase M16 inactive domain
      1e-08   35.3   0.0    1.3e-06   28.5   0.0    2.6  2  Peptidase_M16    Insulinase (Peptidase family M16)
     0.0066   15.7   0.0      0.011   14.9   0.0    1.3  1  N2227            N2227-like protein
  ------ inclusion threshold ------
      0.012   14.7   1.9        2.3    7.3   3.6    2.3  2  M16C_assoc       Peptidase M16C associated
       0.13   12.6   0.0       0.32   11.4   0.0    1.6  1  DDE_Tnp_IS1      IS1 transposase


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.5   5.5e+03      86     123 ..      52      88 ..      29      97 .. 0.71
   2 !   51.4   0.0   3.5e-17   1.2e-13       2     172 ..     198     375 ..     198     384 .. 0.86
   3 ?    0.8   0.0      0.12   4.4e+02     121     157 ..     619     654 ..     597     675 .. 0.84
   4 !   11.8   0.0     5e-05      0.18      92     171 ..     828     902 ..     658     915 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.5
                      EEECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTT CS
  Peptidase_M16_C  86 egpskendeddlalavlntlLgggmesrLytnlrekeg 123
                       +      +d+ a ++l++l+  g +s  ++ l++k  
       CCE28601.1  52 TLATE-ILDDSGAPHTLEHLIFMGSKSYQFKGLLDKLS 88 
                      33333.6799999999****999999999988887765 PP

  == domain 2  score: 51.4 bits;  conditional E-value: 3.5e-17
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEES..........SSSSEEEEEEE CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkl..........deeqahlslaf 85 
                      lt e++++f++ +Y+p n+ l+ivG  dhe l+++++++  ++k +   p+ +++++++    + +p+ lk++          de+   + ++f
       CCE28601.1 198 LTPERIRQFHRDMYQPRNLCLVIVGETDHENLLQILDEFEEGVKDDI--PPLDAKFQRP-WLDSAQPPALKETvvttaefpeeDESVGEILIGF 288
                      699*****************************************775..5555555555.3444444444444477777788888********* PP

                      EEECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS- CS
  Peptidase_M16_C  86 egpskendeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeglt 172
                       gp+ ++     al++l t+L g   s L + l eke la s++ + d   +s ++   + + +e++e v++ +++ l++++++ l+
       CCE28601.1 289 FGPNCNDLIATSALSILLTYLCGSSVSILENVLVEKEELASSIVQWWDARPNSVIWIQPTGVATEKLEFVEKRLFELLKEVASKPLD 375
                      *****9999***********************************9988888999999999999999999999999999999888665 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.12
                      TTTSESEEEEE.EEEESSCEEEEEEEEEECTTHHHHHH CS
  Peptidase_M16_C 121 keglaysvsaf.ndsyrdsglfgisatadpenveevve 157
                      +   +ys++++ +    d + f i+++++pe+++ +v+
       CCE28601.1 619 RDSVGYSIGSSrSW--GDANGFLIQFQVEPEKYAAAVN 654
                      56678888888333..57899**********9999876 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 5e-05
                      THTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS CS
  Peptidase_M16_C  92 ndeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkegl 171
                      +d+  +a++v   +L+   e++L +++r   g +y  +++++ + dsg+++  ++  p+ +++++ + +++++k+++ ++
       CCE28601.1 828 SDPSFAAIMVAIGYLETV-EGPLWNAVR---GAGYAYGSYFSRNIDSGILSYRVYRSPD-AYKAISASRDAIHKIATGEV 902
                      777777777777888887.99*******...8888888888877799**********99.99*************99864 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.5e-10   1.3e-06      31     113 ..      61     145 ..      55     165 .. 0.83
   2 ?    3.7   0.0     0.016        56      76     121 ..     641     683 ..     627     702 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 3.5e-10
                    TTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEE.EEEEESSEEEEEEEEEGGG.HHHHHHHHHHHHHSBTTSHHHHHHHHHHHH CS
  Peptidase_M16  31 nGlAHllehmafkgTkkypsnklaeeleklGgsl.nAttsrentvYyvevlskd.lekaldvladvfkaplleesevererkvve 113
                    +G+ H leh++f+g+k y+ ++l   l++   s  nA t +++t+Y++e++  + ++++l v  + ++ p+++++++ +e+  + 
     CCE28601.1  61 SGAPHTLEHLIFMGSKSYQFKGLLDKLSSRAYSGtNAWTATDHTAYTLETAGWEgFAQVLPVYLEHIILPTITDEAIATEVWHID 145
                    7999****************777777766666655*************9987666**********************99554443 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.016
                    EEEEEGGGHHHHHHHHHHHHHSBTTSHHHHHHHHHHHHHHHHHHCC CS
  Peptidase_M16  76 yvevlskdlekaldvladvfkaplleesevererkvvekeveavda 121
                    +++v++++ + a++ l  ++ ++ ++++ +++   +v+k ++++ +
     CCE28601.1 641 QFQVEPEKYAAAVNWLRTMMFDSVFDPQRLKA---AVNKALADIPE 683
                    7999****************************...55555555544 PP

>> N2227  N2227-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.1e-06     0.011       3      90 ..     924    1013 ..     922    1015 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.1e-06
                  CS----HHHHHHHHHHHHHHHHHH-STT.HHHHHHHHHHHHHHHHHHS-T......T-EEEEET-TT-HHHHHHHHT..T-EEEEEE--HH CS
       N2227    3 evvlasrldmskvrstlrqivRdwsaeg.keERealykpiieelkelvpseskerekvkilvPGaGlGrlavelatk..gyqvegnEfsyf 90  
                  + ++++ ++++ v+s++r++  dws+e  ++ R ++ + i  +lke++  +  e  k ++++  a l    +e a k  gy+v+  E+syf
  CCE28601.1  924 QATMPNAAQQHFVQSVIRNLPMDWSKEVlRKVRAVTEEEIKGALKEYIL-RCFEPGKSNVVITCAKLMTENMETAFKdmGYKVQTRELSYF 1013
                  567889999*****************973567999***********987.799999*********99888888776566***********9 PP

>> M16C_assoc  Peptidase M16C associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.6   0.00064       2.3       2      48 ..     458     504 ..     458     510 .. 0.90
   2 ?    3.1   0.0     0.012        43      87     203 ..     563     675 ..     554     689 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00064
  M16C_assoc   2 kPdeeleeekekeekerLaakkaslseeekekiveetkeLkerQekp 48 
                 kP+++l+++++ ee+er ++ k+ l  e ++k+ ++ +e k++ ++p
  CCE28601.1 458 KPSHTLAKKMKSEEEERVSKRKEDLGTEGLAKLAKKLEEAKKKNDEP 504
                 7********************************99988888877776 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.012
  M16C_assoc  87 hevpTNgivYfrllfdlsdlpeellpylpLftdvltel.gtkkkdyeeleqe.iklktGGisasvsvssspedldkyeegfvlsgkaLdrnvekmfeLl 183
                  +vpT   v +++ + +s++p +l+p++++f+d + +   t + + +++eq  ++l+  ++ +s+ +s s  d +    gf +++ +  ++  ++++ l
  CCE28601.1 563 EDVPTS-FVHVNIHMGTSQVPVQLKPLMSIFSDNFFNThITRDGKQVDFEQVvMELERDSVGYSIGSSRSWGDAN----GFLIQFQVEPEKYAAAVNWL 656
                 555554.4678899999***************9998875455555555555325566666777777777777878....88888888888888888888 PP

  M16C_assoc 184 reilletkfddkerlkelvk 203
                 r++++++ fd  +rlk  v+
  CCE28601.1 657 RTMMFDSVFD-PQRLKAAVN 675
                 8888888887.566666655 PP

>> DDE_Tnp_IS1  IS1 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.8e-05      0.32      32      82 ..     404     454 ..     381     462 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.8e-05
  DDE_Tnp_IS1  32 ktvlayvfgertdetlrellallspfdvviltsddwglyerelkkdkhlis 82 
                  + +  y fg+r  ++lrel +l    ++ ++t ++w ++ ++   d h +s
   CCE28601.1 404 NIITDYLFGKRDGSSLRELATLNEYDELEMWTDEQWRAFLSKWIADAHHVS 454
                  456679*************99999999************999888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1053 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1077  (0.0600703); expected 358.6 (0.02)
Passed bias filter:                      789  (0.0440069); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.46
# Mc/sec: 6849.07
//
Query:       CCE28602.1  [L=464]
Description: probable zinc metallo-protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-63  214.2   8.2    1.3e-63  214.2   8.2    1.5  2  Peptidase_M48_N  CAAX prenyl protease N-terminal, five membra
    7.1e-46  156.5   0.0    1.2e-45  155.8   0.0    1.3  1  Peptidase_M48    Peptidase family M48
    8.3e-05   21.9   0.0     0.0002   20.7   0.0    1.7  1  Peptidase_M56    BlaR1 peptidase M56
  ------ inclusion threshold ------
       0.18   11.7   0.1       0.37   10.7   0.1    1.5  1  SprT-like        SprT-like family


Domain annotation for each model (and alignments):
>> Peptidase_M48_N  CAAX prenyl protease N-terminal, five membrane helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.2   8.2   2.8e-67   1.3e-63       1     182 []      40     224 ..      40     224 .. 0.98
   2 ?   -2.9   0.1       1.2   5.5e+03      63      63 ..     330     330 ..     297     371 .. 0.53

  Alignments for each domain:
  == domain 1  score: 214.2 bits;  conditional E-value: 2.8e-67
  Peptidase_M48_N   1 qlrklketkkvPeeladaitkekfdksraYgldksrfglvsslyslilllallllgllpflwklsgkl.lgl...daeseilqslvfllllsli 90 
                      q+r+l++tk +P+ la++i++e+fdks+aYg++k++f+++s+l+ +i+++a++ +++lp+lw+l+g+l l++     ++ei +s+vf+l + +i
       CCE28602.1  40 QYRVLQSTK-PPAVLAKEISQETFDKSQAYGRAKAQFEIISGLWAQIQNVAFIQYDVLPKLWSLTGDLlLRWapaRFSGEISHSIVFVLSFIVI 132
                      99******7.*********************************************************99555655789**************** PP

  Peptidase_M48_N  91 stlislPfslYstFviEekhGfnkqtlklfikdklkslllalviglpllaallwiiewggeyfylylwlfllvfslllmtiyPtlIaPLFnK 182
                      ++++s+P  +Y+tFv+Eek+Gfnkqt++lfi+d++k+ ll+++++ p+laa+l+ii+++g++f++ylw+f + ++l+ +t yP++I+PLFnK
       CCE28602.1 133 QQVLSMPTRVYNTFVLEEKFGFNKQTPALFITDMVKTNLLTFALVPPILAAFLKIIQKTGNQFVFYLWVFAAGLQLFTTTAYPIFIQPLFNK 224
                      *******************************************************************************************9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
  Peptidase_M48_N  63 k 63 
                      +
       CCE28602.1 330 N 330
                      1 PP

>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8   0.0   2.6e-49   1.2e-45       1     193 [.     227     431 ..     227     433 .. 0.97

  Alignments for each domain:
  == domain 1  score: 155.8 bits;  conditional E-value: 2.6e-49
                    E--SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT....-EEEEESSS-EEEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   1 plreaelkevveelakeaglpkpltkvyvvnspkr....NAFalgggknkrivltdgLlkqllseeelaaVlGHElGHikhrhsvvslivsllasi 92 
                    pl+e+elk++v+ la++ ++  pl +++v++++kr    NA+++g  ++k+iv++d+L+ ++ +++e+ a+l+HElGH+k +h+++ + +++   +
     CCE28602.1 227 PLEEGELKTKVNGLAAAHKF--PLQDLFVIDGSKRsahsNAYFYGLPWKKHIVIYDTLI-EKTDTDEIIAILAHELGHWKLGHTTRLFGIGQAHLL 319
                    6899****************..*************************************.************************************ PP

                    HHHHHHHHHTT-SHHHHHTT--S---HHHHHHHHHHTT.............HHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48  93 llllglallisraeedaagafldalavliglliillfl.............alSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslr 175
                    + + +++++++++++ +a++f+++ +++ig++  ++ +              lSRk+E++AD ++++l+  + +l+++likl+++++++ ++++ +
     CCE28602.1 320 YVFSLFSVFLNNKSLYNAFGFYSQYPIIIGFIL-FSDAlspmdtviklllnILSRKFEFEADDFAKSLGF-RSELASSLIKLHAQNLSTMDADWMY 413
                    ****************************99664.555579******************************.9************************ PP

                    HHHS-SS--HHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 176 sellstHPplleRiqalk 193
                    + ++ +HP l+eR++al+
     CCE28602.1 414 ASYHFSHPHLSERLKALD 431
                    ****************96 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.4e-08    0.0002      88     210 ..     179     305 ..      98     320 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.4e-08
  Peptidase_M56  88 alatdvkkvewktilkillliWivgalilllyliaallvlkkrfvrklgklraeelkeaLkeakeemq..lkrnikir..lsssidsPavlgl.lk 178
                    +  +++ k+ +kt  +++ ++W++ a +  l++ +a+ ++ + ++ kl++l++ elk +++    +++  l+    i   + s  ++  + gl +k
     CCE28602.1 179 PILAAFLKIIQKTGNQFVFYLWVFAAGL-QLFTTTAYPIFIQPLFNKLSPLEEGELKTKVNGLAAAHKfpLQDLFVIDgsKRSAHSNAYFYGLpWK 273
                    5556677777888889********9999.899999******99*****************988777775577777776114455667777786489 PP

  Peptidase_M56 179 prIvlPadflkklsdeeleyillHElaHlkrk 210
                      Iv+ + + +k + +e+  il+HEl H k +
     CCE28602.1 274 KHIVIYDTLIEKTDTDEIIAILAHELGHWKLG 305
                    9***************************9865 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   8.2e-05      0.37      47      75 ..     274     302 ..     252     310 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.2e-05
   SprT-like  47 asIeLseklldsrsedrllntLaHElcHl 75 
                 ++I +  +l+++ + d+++ +LaHEl H 
  CCE28602.1 274 KHIVIYDTLIEKTDTDEIIAILAHELGHW 302
                 589999**********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3391.57
//
Query:       CCE28603.1  [L=457]
Description: related to muscle-derived protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-90  301.6  55.9    8.8e-90  301.0  55.9    1.3  1  Taxilin        Myosin-like coiled-coil protein
     0.0033   17.3   8.3     0.0033   17.3   8.3    4.4  4  DUF724         Protein of unknown function (DUF724)
  ------ inclusion threshold ------
       0.05   12.0  55.0       0.16   10.3  28.0    2.1  2  MAD            Mitotic checkpoint protein
       0.14   11.6   0.0       0.24   10.8   0.0    1.3  1  Lactamase_B_5  Metallo-beta-lactamase superfamily
        2.8    8.2  54.8        3.8    7.8  15.3    5.3  4  TMF_TATA_bd    TATA element modulatory factor 1 TATA binding
        4.1    7.8  30.5       0.28   11.5   2.8    5.2  5  BLOC1_2        Biogenesis of lysosome-related organelles comp


Domain annotation for each model (and alignments):
>> Taxilin  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.0  55.9   2.9e-93   8.8e-90       2     308 .]      72     368 ..      71     368 .. 0.99

  Alignments for each domain:
  == domain 1  score: 301.0 bits;  conditional E-value: 2.9e-93
     Taxilin   2 eaeqlkeslsklespeekleaLvkkyaelleerkrlqkqlkklkkkleqlqkekeqlqaelskaalaksKLekLcRelqkqnkklkeeskqrareeeek 100
                 ++++l+++++k+++ ++k+++L+k+ +ell++++rl+k+++k+kk+ + lqke+++ ++el k+a +k+KLekLcRelq+ n+k+k+e+k++++ ++++
  CCE28603.1  72 ANRDLMQQVAKMDD-MQKIDHLTKRSSELLADMRRLEKENQKNKKRGDSLQKERDSGRTELGKTAGLKEKLEKLCRELQRDNNKMKNENKELQTLQKRN 169
                 799***********.************************************************************************************ PP

     Taxilin 101 rkelaekfqakLkdiqaqieekserneklreenae..lteKlkslieqyelreehfekllktkelelqlaeaKlqqadallkeeqekkkrekeyllkea 197
                   +++ek+ + L++++ ++eek++++++++++++e  ++ ++ks+ieqyelre+hf++l++tkele+q+++ ++         e+e+k++e e+  ++ 
  CCE28603.1 170 TVAWDEKYATLLSKLEGYQEEKDTPRKQVVDMEMEelFRVRFKSFIEQYELRELHFHSLMRTKELEVQYHQSRY---------ERERKNAEGEL--TKT 257
                 **************************************************************************.........***********..*** PP

     Taxilin 198 keltkkvkalketekelkeqlnlYaeKfeefqdtLakSnelFatFkkEmekmtkktkklEketnlwkskfektnkallemaeertekkkeieklkkkiq 296
                 ++l+++v+a+++te el++ql++Y++Kf++++dtL++Sn+lF +F+kEme+m+kk k+lEke++++k++ e+t ++++ maeer+ +kk++++ +kk++
  CCE28603.1 258 RHLQAQVQAFTKTEDELRNQLDVYVDKFKQVEDTLNNSNDLFLSFRKEMEDMSKKGKRLEKENEALKRQKEATAANIIRMAEERQGWKKQLDAAEKKVD 356
                 *************************************************************************************************** PP

     Taxilin 297 kLeklcraLqee 308
                 kL ++++++q +
  CCE28603.1 357 KLMSIIQQMQRQ 368
                 **********87 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8  11.8         6   1.8e+04     101     165 ..      59     122 ..      26     135 .. 0.46
   2 !    4.7   7.1    0.0077        23      94     167 ..     131     205 ..     125     231 .. 0.88
   3 ?    1.3   2.1     0.087   2.6e+02      97     149 ..     233     281 ..     222     291 .. 0.65
   4 !   17.3   8.3   1.1e-06    0.0033     100     185 ..     274     359 ..     273     361 .. 0.92

  Alignments for each domain:
  == domain 1  score: -4.8 bits;  conditional E-value: 6
      DUF724 101 kdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlks 165
                 kd+  ++++e k+++++++++ +++    ++id+l k+ +el     +l +++++++k+  +l++
  CCE28603.1  59 KDQELEIEREVKRANRDLMQQVAKMDD-MQKIDHLTKRSSELLADMRRLEKENQKNKKRGDSLQK 122
                 344444444444444444444333332.2223333333333333333333333333333333333 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0077
      DUF724  94 lnkLlslkdeqtklleerkklekkieeeesekrkleeeid.elekkilelerqlallkekkeaadkeiarlksea 167
                 l k   lk++ +kl +e+++ ++k+++e++e + l++      ++k ++l  +l+  +e+k++  k++++++ e+
  CCE28603.1 131 LGKTAGLKEKLEKLCRELQRDNNKMKNENKELQTLQKRNTvAWDEKYATLLSKLEGYQEEKDTPRKQVVDMEMEE 205
                 5666779**************************9987655388***************************99875 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.087
      DUF724  97 Llslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlall 149
                  l+++ +q+++++erk++e ++++     r+l+++++ + k+  el++ql++ 
  CCE28603.1 233 ELEVQYHQSRYERERKNAEGELTKT----RHLQAQVQAFTKTEDELRNQLDVY 281
                 4666777777777777777766644....456667777777777777777665 PP

  == domain 4  score: 17.3 bits;  conditional E-value: 1.1e-06
      DUF724 100 lkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeFeava 185
                 l+++ + + ++ k++e  + + ++   ++ +e+++++kk ++le+++++lk++kea +++i r+  e +  +++l+++e+++++++
  CCE28603.1 274 LRNQLDVYVDKFKQVEDTLNNSNDLFLSFRKEMEDMSKKGKRLEKENEALKRQKEATAANIIRMAEERQGWKKQLDAAEKKVDKLM 359
                 5666677788899999999999999999****************************************************999876 PP

>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  28.0   5.5e-05      0.16      11     178 ..      43     204 ..      34     221 .. 0.80
   2 ?    6.9  19.7   0.00058       1.7     126     249 ..     228     360 ..     214     368 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.5e-05
         MAD  11 leqlk.nelkqkelehkrarielekkasalkrqleeesdrnqelqkrikllekreeekeealreqiElarlkkknlealnkkekekesklaearevisa 108
                 l+q++  +l+q +  +k + +e e++++  +r+l ++++++ ++q +i +l kr +e  + +r    +++   kn++  ++++ke++s  +e+  +   
  CCE28603.1  43 LLQARiSQLEQDAAGEKDQELEIEREVKRANRDLMQQVAKMDDMQ-KIDHLTKRSSELLADMRRLEKENQ---KNKKRGDSLQKERDSGRTELGKTA-G 136
                 45554367889999999999************************8.69******9888888876444444...677777788999********9986.6 PP

         MAD 109 lknelaelkrqiekqelelsekeseleelqerldllkkklseleqliqqlekkqkelaeaeqrikeLefe 178
                 lk++l++l r++++ + +++++++el+ lq+r+ +     +++  l ++le  q+e  +  +++ ++e+e
  CCE28603.1 137 LKEKLEKLCRELQRDNNKMKNENKELQTLQKRNTVAWD--EKYATLLSKLEGYQEEKDTPRKQVVDMEME 204
                 999******************************98643..345556666666666666666666666654 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00058
         MAD 126 elsekeseleelqerldllkkklseleqliqqlekkqkelaeaeqrik.eLefeiqsqeddslivknsksel....aripelekelerlreenkklnel 219
                  +++ke e++  q r + ++k++++   ++ +l+++ +  ++ e+ ++ +L + + ++++ +  + ns++        + ++ k+ +rl++en+ l+  
  CCE28603.1 228 LMRTKELEVQYHQSRYERERKNAEGELTKTRHLQAQVQAFTKTEDELRnQLDVYVDKFKQVEDTLNNSNDLFlsfrKEMEDMSKKGKRLEKENEALKRQ 326
                 57899999***************9999999******999999999997369999999999999999999976222345789999999********9988 PP

         MAD 220 ke....nkelLkEevedlkkkLereEkareelvk 249
                 ke    n+  + Ee ++ kk+L+  Ek  ++l++
  CCE28603.1 327 KEataaNIIRMAEERQGWKKQLDAAEKKVDKLMS 360
                 873322444578************9999988876 PP

>> Lactamase_B_5  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.2e-05      0.24      72     133 ..     325     386 ..     318     391 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.2e-05
  Lactamase_B_5  72 eiaeltyakiagpaaeketfpiacdrwlsdgdelvsglkvlelkgsktpgelallleettli 133
                       e t a+i   a e++ +  + d   +  d+l+s ++ ++ +g k p ela ++e t l 
     CCE28603.1 325 RQKEATAANIIRMAEERQGWKKQLDAAEKKVDKLMSIIQQMQRQGRKGPPELASVMESTFLD 386
                    55678999*************************************************99875 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   5.0     0.025        76      10      64 ..      37      91 ..      29     101 .. 0.83
   2 ?    7.8  15.3    0.0013       3.8      16      83 ..      98     165 ..      92     208 .. 0.86
   3 ?    7.2   7.0    0.0019       5.6      18     104 ..     226     309 ..     223     316 .. 0.90
   4 ?    2.5   6.7     0.053   1.6e+02      30      78 ..     315     367 ..     306     371 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.025
  TMF_TATA_bd 10 svqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkk 64
                 s++    l+++i +lE + a  k++  ++e+e ++a++++++ +++++++++ ++
   CCE28603.1 37 STEASRLLQARISQLEQDAAGEKDQELEIEREVKRANRDLMQQVAKMDDMQKIDH 91
                 55566679*********************************99999999887765 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0013
  TMF_TATA_bd  16 rlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetl 83 
                  +l +  rrlE E ++ k++  +l++erd+ r e+ k     e+l++l +el+  ++++++ +++++tl
   CCE28603.1  98 ELLADMRRLEKENQKNKKRGDSLQKERDSGRTELGKTAGLKEKLEKLCRELQRDNNKMKNENKELQTL 165
                  577889******************************99999999999999999888777777777765 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0019
  TMF_TATA_bd  18 sseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGeksEeveELraDvaDl 104
                   s  r +E E++  ++++   e+er++a+ e+ k  +   ++++  k+ +el+++l+   ++ +++   l   ++     r++++D+
   CCE28603.1 226 HSLMRTKELEVQYHQSRY---ERERKNAEGELTKTRHLQAQVQAFTKTEDELRNQLDVYVDKFKQVEDTLNNSNDLFLSFRKEMEDM 309
                  6889999***99998766...579****************************************99999999999999999999998 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.053
  TMF_TATA_bd  30 slkeelerleaerdeareeivklmkene....elkelkkeleelekeleelqe 78 
                   l++e+e l+++++++++ i+++ +e +    +l++++k++++l + ++++q+
   CCE28603.1 315 RLEKENEALKRQKEATAANIIRMAEERQgwkkQLDAAEKKVDKLMSIIQQMQR 367
                  56788999999999999999999977642222556666777777777777665 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.9      0.37   1.1e+03      70      86 ..      69      85 ..      28     100 .. 0.49
   2 ?    6.6   1.7    0.0031       9.4      16      68 ..      97     149 ..      87     156 .. 0.89
   3 ?    1.2   0.7      0.15   4.6e+02      14      49 ..     154     190 ..     151     202 .. 0.79
   4 ?   11.5   2.8   9.5e-05      0.28       2      64 ..     265     327 ..     264     330 .. 0.96
   5 ?    5.3   0.5    0.0081        24      57      84 ..     338     365 ..     328     369 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.37
     BLOC1_2 70 iekqvteLeeavseLDe 86
                +++  ++L + v+++D 
  CCE28603.1 69 VKRANRDLMQQVAKMDD 85
                33333333333333333 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0031
     BLOC1_2  16 eatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqid 68 
                 +   +d++ Lek N++  ++ ++l+++ +s +++l k+  ++e+l++++++++
  CCE28603.1  97 SELLADMRRLEKENQKNKKRGDSLQKERDSGRTELGKTAGLKEKLEKLCRELQ 149
                 556789*****************************************999987 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.15
     BLOC1_2  14 eleatvedyklLeklNeaa.sekykklkdvaaslekk 49 
                 +++  ++++++L+k N++a  eky+ l +++++ +++
  CCE28603.1 154 KMKNENKELQTLQKRNTVAwDEKYATLLSKLEGYQEE 190
                 67777899999*****987468999988888877665 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 9.5e-05
     BLOC1_2   2 rmfekvskyleaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpyl 64 
                 ++f+k+++ l+++l++ v+++k +e   ++++  + + ++++++++kk ++l++++e+l+ ++
  CCE28603.1 265 QAFTKTEDELRNQLDVYVDKFKQVEDTLNNSNDLFLSFRKEMEDMSKKGKRLEKENEALKRQK 327
                 689*******************************************************99886 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.0081
     BLOC1_2  57 yeelqpylqqidqiekqvteLeeavseL 84 
                  ee q  ++q+d+ ek+v++L ++++++
  CCE28603.1 338 AEERQGWKKQLDAAEKKVDKLMSIIQQM 365
                 4566667788888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2666  (0.148698); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.84
# Mc/sec: 1652.54
//
Query:       CCE28604.1  [L=1007]
Description: related to metalloprotease 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-78  260.8   0.0    2.1e-77  259.7   0.0    1.6  1  M16C_assoc       Peptidase M16C associated
    1.9e-25   90.0   0.0    1.3e-16   61.1   0.0    3.4  4  Peptidase_M16_C  Peptidase M16 inactive domain
    4.5e-09   36.4   0.0    3.2e-07   30.4   0.0    2.6  2  Peptidase_M16    Insulinase (Peptidase family M16)
  ------ inclusion threshold ------
       0.14   11.7   0.1       0.28   10.7   0.1    1.4  1  Peripla_BP_2     Periplasmic binding protein


Domain annotation for each model (and alignments):
>> M16C_assoc  Peptidase M16C associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.7   0.0   4.6e-81   2.1e-77       1     251 []     480     738 ..     480     738 .. 0.96

  Alignments for each domain:
  == domain 1  score: 259.7 bits;  conditional E-value: 4.6e-81
  M16C_assoc   1 lkPdeeleeekekeekerLaakkasls......eeekekiveetkeLkerQekpdsedlscLPtLkleDIpreiteleeekeveidgvkvllhevpTNg 93 
                 + P+++++e++ kee++rL++k++         +++++++  +++eL ++Q+k+++e+l+cLP+++++DIpr+  ++  ++ ++++g +++++e+pTNg
  CCE28604.1 480 MAPSKHFSEDLIKEEQQRLSEKISLTGeltgsdAKARKHFEGQEQELLAEQNKTSTENLDCLPSVHVKDIPRSLAPVVVRD-MTVNGKSIQWREAPTNG 577
                 99********************985557779999********************99******************5555555.337************** PP

  M16C_assoc  94 ivYfrllfdlsdlpeellpylpLftdvltelgtkkkdyeeleqeiklktGGisasvsvssspedldkyeegfvlsgkaLdrnvekmfeLlreilletkf 192
                 ++Yfr+l+ +sdlpe+l++++pLftd++++lgtk++++e+le++ikl tGG+s+++++++sp+++++++eg++++g+a+dr v+ m++Llr+++let+f
  CCE28604.1 578 LTYFRALNPFSDLPEHLRELIPLFTDSIMRLGTKDQTMEQLEDLIKLSTGGVSVGYHSTPSPTNFESATEGMIFTGMAMDRDVPVMLDLLRKLVLETNF 676
                 *************************************************************************************************** PP

  M16C_assoc 193 dd...kerlkelvkesksrlensiassGhsyAmsraasslspaaalseqlsGlsqlkflkeL 251
                 d+     r+++l+++s++++ n+iassGh++A+++a++ l p+a l++q++Glsq+k++++L
  CCE28604.1 677 DSpeaALRIRQLLQASADGVVNDIASSGHRFAVGYAEAALAPNALLRQQVAGLSQVKLVTSL 738
                 **98889****************************************************987 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.6   1.2e+04     137     150 ..      64      77 ..      53      81 .. 0.65
   2 !   61.1   0.0   2.9e-20   1.3e-16       2     182 ..     225     409 ..     224     410 .. 0.85
   3 !   24.2   0.0   6.2e-09   2.8e-05      84     180 ..     827     915 ..     769     918 .. 0.90
   4 ?   -0.4   0.0      0.23     1e+03      27      48 ..     954     975 ..     954     992 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.6
                      SCEEEEEEEEEECT CS
  Peptidase_M16_C 137 dsglfgisatadpe 150
                        ++f+i+++++p 
       CCE28604.1  64 SNNVFSIGFKTNPP 77 
                      34588888888775 PP

  == domain 2  score: 61.1 bits;  conditional E-value: 2.9e-20
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEES.......SSSSEEEEEEEEEE CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkl.......deeqahlslafegp 88 
                      l +++l +++ + Y+p+n +l+ +Gdv+  e ++ +++ +++ k+    ++ +t+ +++     +++v ++         d  q + s+ +++ 
       CCE28604.1 225 LEYKQLVQYHAQCYHPSNSKLFTYGDVPLAEHLQELDARLKTYKQ----GETDTEARYPIKLSGPQEVTIHGPldplvdlD-RQYKTSVSWIAG 313
                      78999***************************************7....55555555554455555555555577777534.8*********** PP

                      CTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSES..EEEEEEEEESSCEEEEEEEEEECT.THHHHHHHHHHHHHHHHHHTS-HHHHHHH CS
  Peptidase_M16_C  89 skendeddlalavlntlLgggmesrLytnlrekeglay..svsafndsyrdsglfgisatadpe.nveevvevilkelrklkkeglteeelera 179
                      +++n  +++a+a+l++lL++g  s+Ly+ l  + g +   s +a+ ds    g+f+i++t+ +e +v ++   + + lr+ +++g+++  ++ +
       CCE28604.1 314 DTTNVIESFAIALLSNLLMDGYGSPLYRGLV-ETGMGAdwSPNAGYDSSARHGIFTIGLTGVQEtDVPKLKGRVQEILRQARDDGFDKTKINGI 406
                      *******************************.777755126778899999*************************************9988777 PP

                      HHH CS
  Peptidase_M16_C 180 knq 182
                       +q
       CCE28604.1 407 LHQ 409
                      666 PP

  == domain 3  score: 24.2 bits;  conditional E-value: 6.2e-09
                      EEEEECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHH CS
  Peptidase_M16_C  84 afegpskendeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeglteeele 177
                        +++s+ + +++++l++l++lL +     L +++r ++g ay+ +a        glf+++ + dp+  ++++  ++++ +   ++++ ++e+e
       CCE28604.1 827 SVPTVSY-TAPESAPLQILSQLLTHK---HLHHEIR-EKGGAYGGGAMYKPLD--GLFSFYSYRDPN-PQNTLSIMRNAGEWALNKDWCDREIE 912
                      4455666.99****************...*******.9999*******99777..**********88.************************** PP

                      HHH CS
  Peptidase_M16_C 178 rak 180
                      +ak
       CCE28604.1 913 EAK 915
                      999 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.23
                      SS-HHHHHHHHHHHHTTSTHHS CS
  Peptidase_M16_C  27 dvdheelvkliekyfgdlkask 48 
                      dv+ +++++++eky+ +  ++k
       CCE28604.1 954 DVSKDQIQEVAEKYLVSRIKNK 975
                      7999**********97666554 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   7.2e-11   3.2e-07      24     106 ..      73     158 ..      67     169 .. 0.89
   2 ?    2.8   0.0     0.024   1.1e+02      43     106 ..     608     682 ..     601     702 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 7.2e-11
                    GGSCTTTTTHHHHHHHHTTSBBSSSCH.HHHHHHHHHTTCEE.EEEEESSEEEEEEEEEGGG.HHHHHHHHHHHHHSBTTSHHHHH CS
  Peptidase_M16  24 ryepkdlnGlAHllehmafkgTkkyps.nklaeeleklGgsl.nAttsrentvYyvevlskd.lekaldvladvfkaplleeseve 106
                       p+d  G+ H+leh  + g+k++p  + + ++l +   ++ nA+t  ++t Y + +++ + +++++ v  d + +pll+es++ 
     CCE28604.1  73 KTNPPDDTGVPHILEHTTLCGSKNFPVrDPFFKMLPRTLSNFmNAFTASDHTFYPFATTNAQdFKNLMSVYLDSTLNPLLKESDFL 158
                    5678999****************************99999989***********887776555*******************9975 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.024
                    SBBSSSCHHHHHHHHHHTTCEE...........EEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBTTSHHHHH CS
  Peptidase_M16  43 kgTkkypsnklaeeleklGgsl...........nAttsrentvYyvevlskdlekaldvladvfkaplleeseve 106
                    +gTk  + ++l+  ++   g +           n  + +e ++++  + + d++ +ld+l   + ++ +++ e  
     CCE28604.1 608 LGTKDQTMEQLEDLIKLSTGGVsvgyhstpsptNFESATEGMIFTGMAMDRDVPVMLDLLRKLVLETNFDSPEAA 682
                    56666666666666665544444566666666677888999****************************987765 PP

>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   6.2e-05      0.28      94     136 ..     486     537 ..     471     549 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.2e-05
                   S.........HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT. CS
  Peripla_BP_2  94 g.........eslkeqiralgellgledeaeklvaeidsklaaaksaidsek 136
                   +         + l e i  +gel+g+ ++a+k+++  +++l a ++++++e+
    CCE28604.1 486 FsedlikeeqQRLSEKISLTGELTGSDAKARKHFEGQEQELLAEQNKTSTEN 537
                   45666666668899*********************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 6708.66
//
Query:       CCE28605.1  [L=44]
Description: uncharacterized protein CPUR_02292 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 327.69
//
Query:       CCE28606.1  [L=445]
Description: probable ornithine decarboxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-85  284.0   0.0    1.2e-84  283.6   0.0    1.2  1  Orn_Arg_deC_N    Pyridoxal-dependent decarboxylase, pyridoxal
    1.3e-18   67.0   0.0    1.9e-18   66.5   0.0    1.4  1  Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-termina


Domain annotation for each model (and alignments):
>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.6   0.0   1.3e-88   1.2e-84       1     247 []      69     300 ..      69     300 .. 0.98

  Alignments for each domain:
  == domain 1  score: 283.6 bits;  conditional E-value: 1.3e-88
                    HHHHHHHHHHHHHHCTCCEEEEEGGG---HHHHHHHHHTTEEEEESSHHHHHHHHHCTTTGGGEEEEESS--HHHHHHHHHCTHTEEEESSHHHHH CS
  Orn_Arg_deC_N   1 lasierklkrwkkalprikvfYavKansdlavlellaelGlgldcaSkaElelvlaagvsperiifanpckqreelryalekgvkvvtvdnveele 96 
                    l+++ r++ rwkk+lpr+k+fYavK+n+d++v++llaelG+g+dcaSkaE+e+vl++gvsperii+a+pck+ +++r + + gvk++t+dn++el+
     CCE28606.1  69 LGDVYRQHIRWKKNLPRVKPFYAVKSNPDPQVIRLLAELGTGFDCASKAEIEQVLGIGVSPERIIYAQPCKTSSYVRFVNSAGVKQMTFDNADELY 164
                    5789******************************************************************************************** PP

                    HHHHHHCCEEEEEEEE-SCCSSSSTCCCSSSTTSSSSEEHCHHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHHHHHHHHHHHHHHT--- CS
  Orn_Arg_deC_N  97 klaklapeakvllRiktdvsaatcelistggessKFGaaleeavealleaakeenlqlvGvsfHvGSgvsdleafvkavekalklfdelaelGvkl 192
                    k+ak++p+a+++lRi+td+ ++ c+l      s+KFGaa+ ++++ ll++ak+++l++vGvsfHvGSg sdl af+kav++a+++f+++aelG+++
     CCE28606.1 165 KIAKFCPDAELFLRITTDDTSSLCRL------SMKFGAAM-DTTDGLLAVAKQLGLNVVGVSFHVGSGGSDLLAFYKAVRDAHTVFQQGAELGYAM 253
                    **************************......********.9****************************************************** PP

                    SEEE--S-BS-HCSTTSSSSTHHHHHHHHHHHHHHHHHTSSS-EEEE--SHHHHG CS
  Orn_Arg_deC_N 193 kiLdvGGGfgveyeeeeeplkleeiaekirealeeafpgdkevtiiaEpGRalva 247
                    ++LdvGGGf+ e         +e++a ++ +al+e+fp +++v+iiaEpGR++va
     CCE28606.1 254 RTLDVGGGFCGET--------FEQVAAVLDDALNEFFPPGNNVNIIAEPGRYYVA 300
                    *********4432........579*****************************98 PP

>> Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   2.1e-22   1.9e-18       5      98 .]     234     411 ..      64     411 .. 0.69

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 2.1e-22
                      E..................................................................GGEEEEEEEEEEEEETC......EEEE CS
                      x..................................................................xxxxxxxxxxxxxxxxx......xxxx RF
  Orn_DAP_Arg_deC   5 d..................................................................eagvLvtrViavkesek......kkfv 26 
                      +                                                                  +a++L+++Via++++e+       +++
       CCE28606.1 234 KavrdahtvfqqgaelgyamrtldvgggfcgetfeqvaavlddalneffppgnnvniiaepgryyvaTAFTLACHVIARRTVEDptldgkGYML 327
                      05555555555555555555555555555555555555555566666666666666666666666669*************9977899988*** PP

                      EES--TTTS-HHHHCTT-S-E.ESBT..........T-SCEEC.EEEEEEEE-SSSSTT-EEEEEEEEEE.--TT-EEEESS-S CS
                      xxxxxxxxxxxxxxxxxxxxx.xxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC  27 ivdaGmndllrpalygsfhei.pvke..........eeaekeeeeeeevdvvGptCesgDvlakdrelpe.levGdllafedaG 98 
                      +v++G+  +    ++++ h++ ++ +          ++++ ++ +  e++++GptC+++D + + ++++  l+vGd+l+fe++G
       CCE28606.1 328 YVNDGVYGNFSSIMFDHQHPVaNILRtegrtlyntgAARPCSAGDGVEYTIWGPTCDGIDRISDGVRFESvLDVGDWLYFEEMG 411
                      ******55555555555566654444889999998855556777899************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3193.70
//
Query:       CCE28607.1  [L=230]
Description: probable translation elongation factor eEF-1 beta chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-33  113.0   1.7    9.3e-33  112.3   1.7    1.4  1  EF1_GNE         EF-1 guanine nucleotide exchange domain
    8.2e-14   51.8   9.4    8.2e-14   51.8   9.4    2.3  2  EF-1_beta_acid  Eukaryotic elongation factor 1 beta central a
    0.00037   20.6   0.5     0.0024   18.0   0.0    2.2  2  GST_C_3         Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
       0.19   12.0   1.3       0.38   11.0   0.1    2.1  2  GST_C           Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> EF1_GNE  EF-1 guanine nucleotide exchange domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   1.7   2.1e-36   9.3e-33       2      90 .]     147     230 .]     146     230 .] 0.98

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 2.1e-36
                 EEEEEEESSS---HHHHHHHHHH.HS-TSEE--.--EEE-SSS-EEEEEEEEESSS-GGGGHHHHHHTTS-S.....SEEEEEEEEEE- CS
     EF1_GNE   2 vvlevkPeddetdleelekkvksikleglvwgeasklepiafGlkkLqiscvieddkvstdeleekieeiegeledlVqsveivsfnkl 90 
                 v+l+vkP+ddetd+++le++v+si+ +glvwg askl++++fG+kkLqi++v+ed kvs+ +lee+i+    e+ed+Vqs+++++++kl
  CCE28607.1 147 VTLDVKPWDDETDMKALEEAVRSIEKDGLVWG-ASKLVAVGFGIKKLQINLVVEDAKVSLGDLEEEIQ----EFEDYVQSTDVAAMQKL 230
                 89******************************.7**********************************....8**************97 PP

>> EF-1_beta_acid  Eukaryotic elongation factor 1 beta central acidic region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.7   5.1         4   1.8e+04       8      11 ..     101     104 ..     100     107 .. 0.40
   2 !   51.8   9.4   1.8e-17   8.2e-14       1      28 []     108     135 ..     108     135 .. 0.99

  Alignments for each domain:
  == domain 1  score: -6.7 bits;  conditional E-value: 4
  EF-1_beta_acid   8 EEDe 11 
                     E+D+
      CCE28607.1 101 EDDD 104
                     3233 PP

  == domain 2  score: 51.8 bits;  conditional E-value: 1.8e-17
  EF-1_beta_acid   1 LFGSDDEEEDeEaerlreeRLaaYaaKK 28 
                     LFGSDDEEED+Ea+r+reeRLa+Y++KK
      CCE28607.1 108 LFGSDDEEEDAEAARVREERLAEYRKKK 135
                     9**************************9 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.4e-07    0.0024      35      88 ..      14      62 ..       8      65 .. 0.86
   2 ?    0.2   0.2       0.2   8.8e+02      13      34 ..     112     133 ..     105     144 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.4e-07
                HHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHT CS
     GST_C_3 35 yfekvlkkkgggylvgdklTyADlalfqvldgleeaealkkfpklkalyervea 88
                 +++ ++  +  y+ g + T AD+a+f++l+    a   +k+p+++++y+++++
  CCE28607.1 14 LLNNWVQ--TRSYITGYSATQADVACFKALQSSPDA---QKYPNAARWYKHIAS 62
                4555555..677**********************99...89**********986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.2
                 SHCHHHHHHHHHHHHHHHCHHH CS
     GST_C_3  13 dqkeeaekkkefleerlpkflk 34 
                 d++ee+++++ ++eerl ++ k
  CCE28607.1 112 DDEEEDAEAARVREERLAEYRK 133
                 5566668888888888887755 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   8.4e-05      0.38      37      91 ..      14      62 ..       9      64 .. 0.85
   2 ?   -2.9   0.1       1.9   8.5e+03      32      32 ..     125     125 ..     104     141 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.4e-05
                HHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHT CS
       GST_C 37 aleeelkkqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerima 91
                 l+++  ++ y+ G   t AD+a + +l+      +++  +k+pn  +w+++i++
  CCE28607.1 14 LLNNWVQTRSYITGYSATQADVACFKALQSS----PDA--QKYPNAARWYKHIAS 62
                6788999999***************999865....455..7***********986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.9
                 H CS
       GST_C  32 a 32 
                  
  CCE28607.1 125 E 125
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1883.94
//
Query:       CCE28608.1  [L=1030]
Description: probable nucleotide exsicion repair protein RAD16 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-49  167.3   0.5    1.1e-43  149.3   0.1    2.8  3  SNF2_N         SNF2 family N-terminal domain
    4.6e-16   59.1   0.0    2.3e-15   56.9   0.0    2.2  2  Helicase_C     Helicase conserved C-terminal domain
    2.1e-07   31.1   0.1    4.8e-07   29.9   0.1    1.6  1  ResIII         Type III restriction enzyme, res subunit
    9.1e-06   25.5  11.5    9.1e-06   25.5  11.5    2.0  1  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
    0.00036   20.8  12.3    0.00036   20.8  12.3    2.5  2  zf-RING_2      Ring finger domain
     0.0021   17.9  10.0     0.0021   17.9  10.0    2.4  2  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
     0.0054   15.7   0.1      0.013   14.5   0.1    1.5  1  AAA_34         P-loop containing NTP hydrolase pore-1
     0.0062   16.3   0.1      0.012   15.3   0.1    1.4  1  DEAD           DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.013   15.3  11.2      0.013   15.3  11.2    2.0  1  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
      0.076   12.2   0.0       0.14   11.3   0.0    1.3  1  DUF3881        Domain of unknown function, E. rectale Gene de
      0.079   12.2   0.0       0.16   11.2   0.0    1.4  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
       0.96    9.8  11.5       0.33   11.3   8.2    2.1  1  zf-rbx1        RING-H2 zinc finger domain
        6.2    6.9  12.0         16    5.6  12.0    1.8  1  zf-RING_UBOX   RING-type zinc-finger


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.3   0.1     8e-47   1.1e-43      51     236 ..     442     621 ..     430     635 .. 0.92
   2 !   14.9   0.0     6e-06    0.0083     238     349 ..     654     766 ..     646     767 .. 0.80
   3 ?   -1.7   0.0      0.64   8.9e+02     115     161 ..     851     889 ..     848     915 .. 0.70

  Alignments for each domain:
  == domain 1  score: 149.3 bits;  conditional E-value: 8e-47
                 HHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH--------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  51 akqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkllad 149
                  k +++GG+L DemGLGKT+q+++li+       +++       +++p L++vP   l qW++ei++++ +  l+ +vy+g +   +k +++  k l++
  CCE28608.1 442 EKTEWKGGLLGDEMGLGKTIQAVSLIM------SDYP-------AKQPSLVLVPPVALMQWQSEIKSYTDGT-LKTFVYHGTN---QKAKTMTVKDLKA 523
                 5679***********************......3333.......458*********************9877.99******86...6666799999*** PP

                 --EEEE-HHHHHHHT.................TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT- CS
                 xxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 150 ydvvittYdvlsreaelq...........kkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfg 236
                 ydv++ +Y+ l++    q           k++sv+++++ +r++lDE+h +k   + +a+a+  L+t++rw+l+GTP+qn   ++++L+ fL+++pf 
  CCE28608.1 524 YDVIMMSYNSLESMYRKQekgftrkegihKEKSVIHAIKFHRIILDEAHCIKTRSTMTAKACFALQTEYRWCLSGTPLQNRIGEFFSLIRFLNIRPFA 621
                 ************77755599********999*****************************************************************96 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 6e-06
                 HHHHHHHTHHHHH.....HHHHHHHHHHHTT-STTEE---GGGT..--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-H CS
                 xxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 238 kqtfdkllqrpie.....aqaekgrsrLlqllqrlmlrrakkdv..eknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksssks 329
                   +f++ l +pi+        ++   +L+ +  r+mlrr kkd   + +lP k++++ +  + ++e  + n +++    k+   + +     l     +
  CCE28608.1 654 VSVFNQELLNPIQrhgnqGLGREAFGKLRLMTDRIMLRRLKKDHtdSMELPVKEVHVDRQFFGEEENDFANSIMTNGQRKFDTYVAQGV---L----LN 745
                 5689999*****987776677888889****************988889*****************99999666665555555555543...1....22 PP

                 H.H-HHHHHHHHHHHHH---X CS
                 x.xxxxxxxxxxxxxxxxxxx RF
      SNF2_N 330 k.ekilelllelrqacnhpql 349
                 + ++i++l+++ rq+  hp+l
  CCE28608.1 746 NyANIFGLIMQMRQVADHPDL 766
                 225699*********999987 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.64
                 HHHH-TTS-EEE--SSHHHH-----------------EEEE-HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 115 ierhvsssalrvlvyggqkkmkkkntkvapklladydvvittYdvls 161
                 +e++vsss+++ lv++ ++           + +  + +++  + ++ 
  CCE28608.1 851 MENWVSSSKIELLVHDLHQL--------RSNNASHKSIIFSQFTTML 889
                 679************99862........2344555555555555555 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.4   3.4e+03      40      70 ..     500     527 ..     474     536 .. 0.72
   2 !   56.9   0.0   1.7e-18   2.3e-15      10     111 .]     867     973 ..     858     973 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.4
                 TSTEEEESTTSTHHHHHHHHHHHHTTSSSEE CS
  Helicase_C  40 gikvavlhgelpqnereeileqfnkgesdvL 70 
                  +k+ v+hg ++q+ +  ++++ ++  +dv+
  CCE28608.1 500 TLKTFVYHG-TNQKAKTMTVKDLKA--YDVI 527
                 688999999.999999999999965..6633 PP

  == domain 2  score: 56.9 bits;  conditional E-value: 1.7e-18
                 H...HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHH CS
  Helicase_C  10 l...kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiqr 103
                 l    +++  +k++if++++++l+ +++ l++ gi++++l+g+++  +r++++e f  + ++  +L++ ++++  +++++++ V+++d+++n++  +q+
  CCE28608.1 867 LhqlRSNNASHKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGTMTPAQRQASIEHFMnNVDVEcFLVSLKAGGVALNLTEASRVFIVDPWWNPAAEWQS 965
                 3334789999*************7777778899***********************53778889*********************************** PP

                 HTTSSSTT CS
  Helicase_C 104 iGRtgRag 111
                 ++R++R+g
  CCE28608.1 966 ADRCHRIG 973
                 ******97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   3.5e-10   4.8e-07      14     169 ..     436     600 ..     424     602 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 3.5e-10
                 HHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..........-SEEEE CS
      ResIII  14 nlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka...kekdstnkkilvt 109
                 ++++++++++ k gl+  + G GKT+ a++li + + +++    l+lvp  +l+ q+++e+k++++ + k    +++g ++ka   + kd +  +++++
  CCE28608.1 436 AWMKEMEKTEWKGGLLGDEMGLGKTIQAVSLIMSDYPAKQ--PSLVLVPPVALM-QWQSEIKSYTDGTLKT--FVYHGTNQKAktmTVKDLKAYDVIMM 529
                 355566668888999999**********888777776644..89*******986.9***********9854..44444444445567799********* PP

                 EHHHHHHTH..................HHHTTT-SEEEEETGGGTTS.TTTHH.HHHT---SEEEEEESS- CS
      ResIII 110 tiqsldadseee..........eeeseellrdrfdviiiDEaHrlgakkswre.ilekfkeavllglTATp 169
                 +++sl +  +++           +e+      +f  ii DEaH ++  +++++ +  +++  ++  l++Tp
  CCE28608.1 530 SYNSLESMYRKQekgftrkegiHKEKSVIHAIKFHRIILDEAHCIKTRSTMTAkACFALQTEYRWCLSGTP 600
                 *******9988887777777766666666667777********9999876655344555777777777777 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5  11.5   6.6e-09   9.1e-06       1      41 []     781     820 ..     781     820 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 6.6e-09
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 C iC e a+++   + CkH fC++C++ ++ks  +  CP+C
  CCE28608.1 781 CCICDEPAEDTI-RSRCKHDFCRACVSGYVKSTDTPDCPTC 820
                 ***********9.******************777777**** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   3.1       6.1   8.5e+03      27      44 .]     626     647 ..     622     657 .. 0.61
   2 !   20.8  12.3   2.6e-07   0.00036       3      43 ..     781     820 ..     779     821 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.1
   zf-RING_2  27 reCl...erw.lrssstCPlCr 44 
                 ++C     +w +  s++C  Cr
  CCE28608.1 626 KQCPcstLEWtMDDSNRCSGCR 647
                 4432223456455555577776 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 2.6e-07
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerwlrssst..CPlC 43 
                 C+IC e+ +   ++++  C+H f+r C++ +++s+ t  CP+C
  CCE28608.1 781 CCICDEPAE---DTIRSRCKHDFCRACVSGYVKSTDTpdCPTC 820
                 ****86664...444445************************* PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   2.6      0.15   2.1e+02      24      46 ..     623     649 ..     620     652 .. 0.88
   2 !   17.9  10.0   1.5e-06    0.0021       4      44 ..     780     821 ..     777     825 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.15
                 EE-HHHHHHHHH....TT-B-TTT--B CS
  zf-C3HC4_3  24 vlCeeCaekllk....rkkkCpiCrrp 46 
                 +lC++C  + l+     +++C  Cr p
  CCE28608.1 623 YLCKQCPCSTLEwtmdDSNRCSGCRHP 649
                 79****99998889999********87 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.5e-06
                 B-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH..TT-B-TTT- CS
  zf-C3HC4_3   4 eCviClerprnvvllpCgHlvlCeeCaekllk..rkkkCpiCr 44 
                  C+iC e  ++++  +C+H  +C +C++ + k   ++ Cp C+
  CCE28608.1 780 VCCICDEPAEDTIRSRCKHD-FCRACVSGYVKstDTPDCPTCH 821
                 6*******************.*********99999*******7 PP

>> AAA_34  P-loop containing NTP hydrolase pore-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   9.1e-06     0.013      42     200 ..     428     583 ..     401     604 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.1e-06
      AAA_34  42 eavvyacqrheellpdgkRaGfllGDgaGvGkgrqiagiilenllqgrkkavwvsvsedLkeDae.rDlkdigaseievvalnklkegkkikeseelke 139
                         ++ + +++++ +G llGD++G+Gk+ q  ++i++ + +++   v v   + ++  +e + ++d   + + v++  + k++ ++++++    
  CCE28608.1 428 KPFQLEGLAWMKEMEKTEWKGGLLGDEMGLGKTIQAVSLIMSDYPAKQPSLVLVPPVALMQWQSEiKSYTDGTLK-TFVYHGTNQKAK-TMTVKDLKAY 524
                 4444444455666777778899**********************9999988888877776655553455554433.333333333333.3335555566 PP

      AAA_34 140 GvlFvtYstliseskkkk........ksrleqlveWlgedfdGvivfDEchkaknlakseekkatktgk 200
                  v+++ Y++l s  +k++          + + +++ ++  f   i++DE+h +k+  +       +t+k
  CCE28608.1 525 DVIMMSYNSLESMYRKQEkgftrkegIHKEKSVIHAIK--FH-RIILDEAHCIKTRST-------MTAK 583
                 7*********9998886656444333233333343333..33.799999999987654.......3444 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1     9e-06     0.012      22     136 ..     454     577 ..     444     590 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9e-06
                 STTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET...TSSHHHHHHHHHTTCSEEEEEHHHHHHHH..... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
        DEAD  22 eTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig...gvaardqlskldngvdivvgtpgrlddll..... 112
                 e G GKT  ++  +++         +   l+++P  +L+ q  +++k++++ + l++  +++   ++a++  +++l + +d++++    l ++      
  CCE28608.1 454 EMGLGKTIQAVSLIMSDY-----PAKQPSLVLVPPVALM-QWQSEIKSYTDGT-LKTF-VYHgtnQKAKTMTVKDL-KAYDVIMMSYNSLESMYrkqek 543
                 6799***99888888555.....5666789999999998.5667888888863.4554.44401144444444444.77*************9999999 PP

                 ........HCTSSHCTTEEE..EEEETHHHHHHT CS
                 ........xxxxxxxxxxxx..xxxxxxxxxxxx RF
        DEAD 113 ........stgklnlsqvrf..lVlDEadrlldq 136
                         +++k  ++ ++f  ++lDEa+++   
  CCE28608.1 544 gftrkegiHKEKSVIHAIKFhrIILDEAHCIKTR 577
                 9998888856666688888888********9865 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3  11.2   9.4e-06     0.013       2      40 .]     781     820 ..     780     820 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.4e-06
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn..eCPlC 40 
                 C iC +  +d+     C+H fC+ C+  + ++ +   CP+C
  CCE28608.1 781 CCICDEPAEDT-IRSRCKHDFCRACVSGYVKSTDtpDCPTC 820
                 **********7.777*************998887789**** PP

>> DUF3881  Domain of unknown function, E. rectale Gene description (DUF3881)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0001      0.14     164     191 ..     997    1024 ..     985    1027 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
     DUF3881  164 skkrkkllaaAkeGdeeAiesLtledid 191 
                  ++k+ ++++   +Gd++A+esLt +d++
  CCE28608.1  997 QEKKAHMIHSTINGDKKAMESLTPQDMQ 1024
                  68999*********************97 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00012      0.16      59     148 ..     875     972 ..     844     992 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
  ERCC3_RAD25_C  59 rgDkiivfsDnvfaLkeyakklkkp.....yiyGetseaerlkilqkfkknpkvntifls.kvgDtsiDlPeanvliqis..shfgsrrqeaqrlG 146
                     + k i+fs     L+ +  +l+++     ++ G+++ a+r++ +++f +n +v++ ++s k g  +++l ea+ +  ++   + ++  q a r  
     CCE28608.1 875 ASHKSIIFSQFTTMLQLIEWRLRRAgittvMLDGTMTPAQRQASIEHFMNNVDVECFLVSlKAGGVALNLTEASRVFIVDpwWNPAAEWQSADRCH 970
                    367999999999999888887776422222788**************************989***********98777762246678888888888 PP

  ERCC3_RAD25_C 147 ri 148
                    ri
     CCE28608.1 971 RI 972
                    87 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   8.2   0.00024      0.33      14      54 ..     781     820 ..     776     821 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00024
     zf-rbx1  14 cieckapgdeecpvvlGeCgHaFHlhCiskWlkt..rkvCPlc 54 
                 c  c++p ++    + ++C+H F   C+s ++k+     CP+c
  CCE28608.1 781 CCICDEPAED---TIRSRCKHDFCRACVSGYVKStdTPDCPTC 820
                 7889999888...56679****************77777**** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  12.0     0.012        16       1      39 []     781     818 ..     781     821 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.012
  zf-RING_UBOX   1 CpIClelftdPlv.lpCGHtFCreClwelskslegafkCP 39 
                   C IC e+ +d  +   C H FCr C+     ++ ++  CP
    CCE28608.1 781 CCICDEPAEDT-IrSRCKHDFCRACV-SGYVKSTDTPDCP 818
                   9*******999.5247**********.4444455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1030 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 7348.36
//
Query:       CCE28609.1  [L=549]
Description: related to nucleotide exsicion repair protein RAD7 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.7e-05   22.4   0.0        0.9    9.8   0.0    5.5  6  LRR_6        Leucine Rich repeat
    0.00072   19.9   1.4         12    6.5   0.0    5.2  7  LRR_4        Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.062   12.9   0.4       0.14   11.8   0.4    1.6  1  GATA         GATA zinc finger
       0.17   11.1   2.7       0.28   10.4   2.7    1.3  1  PPL5         Prim-pol family 5


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0002       0.9       1      23 [.     306     329 ..     306     330 .. 0.96
   2 ?   -2.2   0.1       1.4   6.1e+03       3      10 ..     360     367 ..     360     368 .. 0.83
   3 ?    1.0   0.0      0.13   5.8e+02       1      19 [.     384     403 ..     384     408 .. 0.85
   4 ?   -0.4   0.0      0.36   1.6e+03       2      14 ..     413     425 ..     412     429 .. 0.84
   5 ?    3.1   0.0     0.027   1.2e+02       5      17 ..     486     499 ..     484     499 .. 0.89
   6 ?   -1.6   0.0      0.88     4e+03       1      13 [.     508     520 ..     508     520 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0002
       LRR_6   1 snthLteLdLsgNd.IgDeGaeaL 23 
                 +++hL  L +  N+ ++ +G+e++
  CCE28609.1 306 HCPHLSRLKIENNQkLTAQGVESI 329
                 89********************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
       LRR_6   3 thLteLdL 10 
                 ++L++L+L
  CCE28609.1 360 PNLKTLSL 367
                 58****99 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.13
       LRR_6   1 snthLteLdLsgNd.IgDeG 19 
                 s+++L++L ++  + ++D+G
  CCE28609.1 384 SCRSLQKLRITESEtMTDQG 403
                 599*******9999999988 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.36
       LRR_6   2 nthLteLdLsgNd 14 
                 n+ L ++dL+ + 
  CCE28609.1 413 NPPLHTVDLQKCR 425
                 8999*****9885 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.027
       LRR_6   5 LteLdLsgNd.IgD 17 
                 L++L++s+++ ++D
  CCE28609.1 486 LKTLEISFCEqVTD 499
                 9********98887 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 0.88
       LRR_6   1 snthLteLdLsgN 13 
                 s+++++e+++ g+
  CCE28609.1 508 SCPKIKEVNVFGC 520
                 5899******988 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.69   3.1e+03      25      36 ..     256     267 ..     254     288 .. 0.57
   2 ?    2.2   0.0      0.06   2.7e+02      21      36 ..     306     321 ..     298     333 .. 0.77
   3 ?    2.4   1.1     0.052   2.3e+02       2      39 ..     309     346 ..     308     352 .. 0.69
   4 ?    2.3   1.5     0.054   2.4e+02       3      30 ..     335     367 ..     333     374 .. 0.72
   5 ?   -2.9   0.0       2.4   1.1e+04      21      30 ..     384     393 ..     376     397 .. 0.69
   6 ?   -0.0   0.0      0.29   1.3e+03       1      24 [.     422     448 ..     422     449 .. 0.72
   7 !    6.5   0.0    0.0027        12       1      32 [.     484     519 ..     484     527 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.69
                 --EEE-.-S--- CS
       LRR_4  25 LkeLdLsgNnli 36 
                 L+e++L+g nl+
  CCE28609.1 256 LEEFYLHGANLL 267
                 555555444444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.06
                 H-TT--EEE-.-S--- CS
       LRR_4  21 klpnLkeLdLsgNnli 36 
                  +p+L  L + +N ++
  CCE28609.1 306 HCPHLSRLKIENNQKL 321
                 49********777555 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.052
                 S--EEE--SS.---E-S-..HHH-TT--EEE-..-S-----G CS
       LRR_4   2 nLevLdLsnN.qltdipl..leklpnLkeLdL.sgNnlitdl 39 
                 +L  L + nN +lt  +   ++ l  L++L L  +N    dl
  CCE28609.1 309 HLSRLKIENNqKLTAQGVesIGALSALEHLGLqLHN----DL 346
                 677788888855886666433349999999876567....65 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.054
                 --EEE--.SS---.E-S-..HHH.-TT--EEE- CS
       LRR_4   3 LevLdLs.nNqlt.dipl..lek.lpnLkeLdL 30 
                 Le+L L+ +N l  ++    ++k  pnLk+L+L
  CCE28609.1 335 LEHLGLQlHNDLNpEVLEsvINKiGPNLKTLSL 367
                 88888888888664322234557789*****98 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 2.4
                 H-TT--EEE- CS
       LRR_4  21 klpnLkeLdL 30 
                 ++ +L++L +
  CCE28609.1 384 SCRSLQKLRI 393
                 3888888877 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 0.29
                 SS--EEE--S..S---E-S-HH.H-TT CS
       LRR_4   1 pnLevLdLsn..Nqltdiplle.klpn 24 
                 ++ ++Ld ++  N++  ++l++ +++ 
  CCE28609.1 422 QKCRHLDAAHprNNVDNVGLCSeGFKA 448
                 5789*****666999998884424665 PP

  == domain 7  score: 6.5 bits;  conditional E-value: 0.0027
                 SS--EEE--SS.---E-S-...HHH-TT--EEE-.- CS
       LRR_4   1 pnLevLdLsnN.qltdipl...leklpnLkeLdLsg 32 
                 p L++L +s + q+td  l   ++++p+ ke+++ g
  CCE28609.1 484 PELKTLEISFCeQVTDYVLgciFRSCPKIKEVNVFG 519
                 68*******9999***999999999*******9844 PP

>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   3.2e-05      0.14       1      34 [.      82     116 ..      82     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.2e-05
        GATA   1 CsnCgttk..TplWRrgpdgnksLCnaCGlyykkkg 34 
                 C++Cg ++  Tp    gp+g   LC +CG   +k++
  CCE28609.1  82 CAKCGKRFtvTPYSVAGPEGGL-LCAPCGREAAKER 116
                 99*****9555777777*****.******8777766 PP

>> PPL5  Prim-pol family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.7   6.2e-05      0.28     186     243 ..      15      69 ..       1      81 [. 0.55

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.2e-05
        PPL5 186 eeveeksskkkskekkkklkkktsrkkkkegkkekesekeeededeeddlsdlvnvv.e 243
                 ++v ++  ++ sk      kk++++ +k+++ k++++ k++ d+ ++dd+ d+vn++ e
  CCE28609.1  15 SPVPTAAGTRASK----RKKKVEETGEKTKSGKASKKRKKKADSSDDDDMDDVVNAIlE 69 
                 3333333333333....23333334444444444555556689999999******9933 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1152  (0.0642534); expected 358.6 (0.02)
Passed bias filter:                      771  (0.043003); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 3832.40
//
Query:       CCE28610.1  [L=321]
Description: probable triacylglycerol lipase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-30  105.3   0.0    3.3e-30  104.8   0.0    1.2  1  Lipase_3       Lipase (class 3)
    2.4e-05   23.7   0.0      4e-05   23.0   0.0    1.2  1  Hydrolase_4    Serine aminopeptidase, S33
    0.00026   21.6   0.2    0.00035   21.2   0.2    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.0   5.5e-34   3.3e-30       1     140 [.      93     223 ..      93     225 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 5.5e-34
                 EEEE----------------EEE-HHHH-GTT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS---EEE CS
    Lipase_3   1 vvafRGtesakdwltdldfslteakellekeggkvhsgfleayeeslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengenekkkvtv 99 
                 v+++RG++s++++ltd+  s+  ++ +   +++kvh gf ++++  +r++v++ +++   ++p+y+++ +GHSLGga AlLa +d++++g     ++ +
  CCE28610.1  93 VLSVRGSDSIRNYLTDIFLSWHICHFT---SDCKVHVGFSKSWR-EIRDDVTSAVQTARGRFPKYRFITVGHSLGGASALLALADFIQDG----IPTDL 183
                 689**********************98...69************.*********************************************....99*** PP

                 EEES----B-HHHHHHHHT-TTEEEEEEEETT--GGG-S-S CS
    Lipase_3 100 vtfGqPrvgnkefaklvdsqlnkkvlrvvntnDivPrlppl 140
                 +t+G+Prvgn +f +++dsq     +rv++  D+v+rlppl
  CCE28610.1 184 YTYGCPRVGNDHFVDWIDSQPGV-RFRVTHGSDPVARLPPL 223
                 ******************87777.9**************85 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   6.7e-09     4e-05      48      95 ..     125     172 ..     119     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 6.7e-09
  Hydrolase_4  48 krghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyll 95 
                  + g  +s+ ++ dD+ ++v++++ + p+ +++ +GhS+GG+ all+l+
   CCE28610.1 125 HVGFSKSWREIRDDVTSAVQTARGRFPKYRFITVGHSLGGASALLALA 172
                  567889*************************************99886 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   5.9e-08   0.00035      45     191 ..     130     305 ..      78     318 .. 0.49

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.9e-08
                    --HHHCHHH.HHHHCCTT....TTSEEEEEETCHHHHHHHHHHCC........EE..EEES-..----TTT..........S----TTHHHHHHTT CS
  Abhydrolase_6  45 ldledladl.aalldelaa..gggpvvlvGHSlGGalalaaapla......lvvg..vlldppptalpagl..........laaalelllallall 119
                     ++++++d+   +++  ++     +++ vGHSlGGa al+a++               + +p    ++ +           +++++++   + a+l
     CCE28610.1 130 KSWREIRDDvTSAVQTARGrfPKYRFITVGHSLGGASALLALADFiqdgipT--DlyTYGCP---RVGNDHfvdwidsqpgVRFRVTHGSDPVARL 220
                    78888877764444444333555666**********9999444445665431..13466666...2222223233333222222222222222222 PP

                    -CCCCHCCH........S-HSCCCCHHHCCCCHCHCCCGHHHHCC.HHCHTTCCHHTT-TTGC.........EEECTT-CHHHHCHHCCC CS
  Abhydrolase_6 120 rllawlsre........plprlfladedadaawrarlarlaalla.glgllpaaawadlpvpl.........lvlggeDplvprllerll 191
                    + + w+ ++        + + +  +    ++++  r+ ++ +  +   g+++ + wa++  +          +v +++D+++   le++l
     CCE28610.1 221 P-PLWMGYRhtspeywlSKGGGVQD----EPDVEIRVCDGIKNSDcNAGTWAMDVWAHMNYLGdtsacmgdpIVKWKRDDAMDSELEQRL 305
                    2.34443332111111011112222....2223333333332222122233333333333333322222222233655555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2331.41
//
Query:       CCE28611.1  [L=503]
Description: related to nicotinamide mononucleotide permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-32  112.8  27.8    3.2e-32  111.8  28.0    1.4  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8  28.0   1.8e-36   3.2e-32       1     352 [.      59     428 ..      59     429 .. 0.81
   2 ?   -3.2   0.0      0.17     3e+03     158     186 ..     452     479 ..     449     492 .. 0.66

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 1.8e-36
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 ++l++++s+++rs++g a    l +dlg+ +  ++ +l+++++ ++++ +p   l   +G+ +++ ++ l+f++ +++ +f++++ +l+++r++ G+++
  CCE28611.1  59 VCLLYLVSFIDRSNIGNAKIAGLDKDLGLRGFDYNAALSVFYISFIIFEIPCNTLCKYVGPGWFIPATTLGFGILTVCNAFVTNFSTLCAVRFFLGIFE 157
                 57999************9999******************************************************66666778988************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllgglla..sslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee.... 188
                 ++++p+ + ++++w+ ++e ++ ++l+ +++sl+ ++g ll+++++  +s+g    Wr +f i +i++++ +v+ ++ lp++p +  + sp+e+e    
  CCE28611.1 158 AGVMPSLVLYLSRWYRQNELTFRVSLFIVSASLAGAFGGLLASAISklESFGslhsWRMIFGIEGIATCVIAVISFFILPDRPETAIWLSPREKElask 256
                 *******************************************9996666669999*****************999*********************99 PP

       MFS_1 189 ....kgtgpaplvp.....awkallkdpvlwillialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdrlgrr 274
                     +++g +++v+      +++   +pv+++  i++++ ++ + g++++lp++++    ++    +  +++     ++lvga ++  ++++s rl+r 
  CCE28611.1 257 rlqsERVGTTEVVDqfscsKIRLGILNPVVLSTSIIFFFDCITVHGVSFFLPTIVKAI--FPkhtlASQQLL--TVPPYLVGALACASTSFVSWRLNR- 350
                 9999666666666656555344444444443455555555556666*******53333..334455235555..888888888888888888866666. PP

       MFS_1 275 rrlllallllllaalglallavtssavllllvlvl..iGf.glgfv.fpsllalasdlappeeagtasglfntagslggalg 352
                  r +++++++ +a++g+a++  t+++++ + +++l  +G+ ++g   ++ ++a +++     +  +a++ + ++g++gg+++
  CCE28611.1 351 -RGIFMIGCAPFAVIGYAMFLGTTNPSVRYGAVFLpsLGIfTYGALtNSHVAANVVSD---TAKSSAIATNVMFGNVGGLIS 428
                 .888888888888899999999988888888888856666555544344444444443...366778888889******997 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.17
       MFS_1 158 aivsllafvlfllllpeepperkrkspke 186
                 a ++l+a+ l ++++ +++++r++++ + 
  CCE28611.1 452 ASICLIAIGL-YIWIKRNNKRRETVNAAA 479
                 6677787553.577777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3769.89
//
Query:       CCE28612.1  [L=343]
Description: related to exostosin-like 3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-55  186.0   0.0      9e-55  185.6   0.0    1.1  1  Glyco_transf_64  Glycosyl transferase family 64 domain
  ------ inclusion threshold ------
       0.15   12.1   0.0       0.55   10.2   0.0    1.8  2  MtlR             Mannitol repressor


Domain annotation for each model (and alignments):
>> Glyco_transf_64  Glycosyl transferase family 64 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6   0.0     1e-58     9e-55       1     240 [.      92     336 ..      92     339 .. 0.92

  Alignments for each domain:
  == domain 1  score: 185.6 bits;  conditional E-value: 1e-58
  Glyco_transf_64   1 ftvviltsekrkelllklvkrv..akspslkkilvlWnnekpppekkkwpstsvpvtvirqkkkslnnRflpykeieTdavlslDddillstde 92 
                      ft+ ++t ++r + l + ++ +  +k+psl++++v+Wn+ +++p ++ + +++vpv++++   +sln+++ p +  +T+a++  Dddi  + ++
       CCE28612.1  92 FTIAMQT-YRRPKELNETLNGLlsEKIPSLSEVVVVWNDMETTPPESYTSKHGVPVRFRQSLVNSLNQKLWPDPAYQTQAIFLSDDDIFYKPRD 184
                      8******.************998889*************77777777888889***************************************** PP

  Glyco_transf_64  93 ldfAFsvwref.pdrivGfvarshvwdeskgewsYts....ewtneysmvLtgaaflhrkylelyt..kslpaelrklvdeernCeDIlmnflv 179
                      l+f F+ wr+f + r+ G +ar   ++e+++e++Y+       +n+y+m+L+g++f h  +l+ y+   +l+ ++r++vd++ nCeDI+mn+lv
       CCE28612.1 185 LEFVFQTWRKFgRRRMTGGFARCT-IEEANHEYKYSFcstdDAHNNYNMILSGLSFAHISFLDYYSsnDALATKIRAYVDQHFNCEDIAMNYLV 277
                      *********994678*******86.666889999987779999**********************97667899********************* PP

  Glyco_transf_64 180 aeetrkppvkvtslkqfkeeensekvglsskkeHlekrskCinkfaevfgkmpLvesqlrv 240
                      +  t+++p+ v+ +  +   +    +g+s k++Hle r++C+n+f+++fg mpL+e+  ++
       CCE28612.1 278 SMLTGEGPLLVKGKDPYVMLSPP--TGISTKPGHLEARTQCLNDFNKLFGCMPLIEETGHI 336
                      ********999988888855555..6*****************************988766 PP

>> MtlR  Mannitol repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.23   2.1e+03     100     146 ..      56     102 ..      43     109 .. 0.74
   2 ?   10.2   0.0   6.1e-05      0.55      21      59 ..     249     286 ..     238     289 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.23
        MtlR 100 yeFsddeildfikelhlvsekslleleeekeeeddsllyqlqqqrye 146
                  +F++   l+  +  h  s+   +++ +++  +dd++++++q+ r+ 
  CCE28612.1  56 TSFTSTPKLSECRGFHDASKIWKASQLKRQRLRDDKFTIAMQTYRRP 102
                 56666666777777777777776777777777889999999998875 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 6.1e-05
        MtlR  21 aavkileeavdqLiervFrkddfavkyvvepLleksGPL 59 
                  +++ l+ ++++ + + F  +d a++y v ++l+ +GPL
  CCE28612.1 249 SSNDALATKIRAYVDQHFNCEDIAMNYLV-SMLTGEGPL 286
                 58999**********************99.78999***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2609.35
//
Query:       CCE28613.1  [L=907]
Description: probable beta-glucosidase 1 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-44  151.8   0.0    4.4e-44  151.2   0.0    1.3  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    8.7e-44  149.9   0.1    2.6e-43  148.4   0.0    1.8  2  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    5.5e-21   74.5   0.1      1e-20   73.6   0.1    1.4  1  Fn3-like         Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   0.0   7.3e-48   4.4e-44      40     317 ..     100     372 ..      79     374 .. 0.83

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 7.3e-48
                    GGTSSHHHHHHHHHHHHHH-SS....S--EEEE---BTTB---SSS---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B--.---STT CS
  Glyco_hydro_3  40 enledtkqleelieaarqaseksrlgiPlllavDqegGlvqrlgegtlfPsalalaatssldlikelgriiakelralgididfaPvvd.vnrdpr 134
                     ++ +t+q  e  ++ +   +  rlg P l+  D + G++q   + t fP+ +  +at++++l+++ g +i+ke+r  g+++ ++P+v   +r+p+
     CCE28613.1 100 LEYTNTQQQGEHCNGNS--GSALRLGFPQLCINDGQAGIRQA-DHVTAFPGGITTGATFDKSLMYQRGVAIGKEARGKGVNVWLGPTVGpMGRKPK 192
                    34444444444444443..344469***************54.445*****************************************96599**** PP

                    SSSGGGSS-SSHHHHHHHHHHHHHHHHHTT-EEEEEEETTGTT-SSETTTSEEB-......---HHHHHHTTHHHHHHHHHTT-SEEEE---B-TT CS
  Glyco_hydro_3 135 ngigvrsFsedpelvaalaaamvkGlqgagvaatvKHFpghGdgavdshkelptv......dhseeelrevdlvpfqaaieagvdsVMtaHvqfpa 224
                     g+ +++F+ dp l a  a++++kG+q++gv+at+KH +g    +++  + ++ v      +++ + l+e ++ pf +a++agv++ Mta   ++a
     CCE28613.1 193 GGRDFEGFGTDPCLQAIGARETIKGVQEQGVIATIKHWIGN---EQEMYRMYNPVqygyssNIDDRVLHELYAWPFAEAVRAGVGAAMTA---YNA 282
                    ****************************************7...55555544443111111578999***********************...*** PP

                    T---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SG.......HHHHHHHHHTTSS-HHHHHHHH CS
  Glyco_hydro_3 225 ldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadrggkeeavvlaLkAGvDilLvpeertse.......ikalkkavkeGeltearidesv 313
                    ++gt ++ +++l+ ++L++elGF+G+v+sD+l  ++++  g+          AG+D+ +  +++          + +l  +v +G++++ r+++ +
     CCE28613.1 283 VNGTACSQHPYLINGLLKDELGFQGFVMSDWL--AHMSGVGSAL--------AGLDMDMPGDTQIPIvtghaywMYELSRSVLNGSVPMDRLNDMA 368
                    ********************************..6666655544........6666666666664335566666899******************* PP

                    HHHH CS
  Glyco_hydro_3 314 rrvl 317
                    +rv+
     CCE28613.1 369 TRVV 372
                    **97 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   0.0   4.4e-47   2.6e-43       1     204 []     435     667 ..     435     667 .. 0.91
   2 ?   -2.1   0.0       0.5     3e+03     193     204 .]     676     687 ..     670     687 .. 0.83

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 4.4e-47
                      -EEEEEGSS--S-S-STEEEEEESGGGS................SS-SS-BSSS----S---HHHHHHHHHHH.......-HHHHHHHHHHHTS CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C   1 iVLLkNennlLPLkkklkkiaviGpnad................etlklGggsgtvtvsylvsplegirerles.....eegideaveaakeaD 73 
                      i+LLkN ++lLPL+ + + i v+G  a+                +tl +G+gsgtv + yl++p+++i++r+++     ++++    +  ++ D
       CCE28613.1 435 ITLLKNTDHLLPLNVS-RPIKVFGTGAKtnadgpnacsdrkcnkGTLGQGWGSGTVDYMYLDDPITAIQARAKDvefynSDSFPGTIDPSTDDD 527
                      79***********554.69*****99999999****************************************98****999999********** PP

                      EEEEEEEES...SB-TT........SCSGHHSS..TTHHHHHHHHHHTTSSEEEEEEESSGG--TTT.GTTTEEEEEE-S--GCCHHHHHHHHH CS
                      xxxxxxxxxxxxxxxxx........xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  74 vavvvvgedpeiegEgv........Drtdlalp..eaqdelikavaaanknvvvvlqsggpvavepw.keenvkAilaawlpGqegGtaiadvL 156
                      va v++ +d   +gE++        Dr+   l   ++ d+l++ +aa+ knvvvv ++ gp+ +e+w   ++vk++l a+lpGqe+G+++a+v+
       CCE28613.1 528 VAFVFITSD---SGENQytvehnhgDRDASGLFawHNGDKLVQDAAAKYKNVVVVAHTVGPMILEQWiTLPSVKSVLIAHLPGQEAGRSLAEVI 618
                      *********...777777778888866666665558********************************889*********************** PP

                      TTSS---B--SS-EESSSGGG.............S-----SETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 157 fGdvnPsGkLpvtfpksledlpddyyeek..dtykfegtplYpeGlglsY 204
                      fGdv+PsG+Lp+++ k+++d+p+++++    + y ++ + +Y+eGl+++Y
       CCE28613.1 619 FGDVSPSGHLPYSITKKEDDMPESVTQ-LidKAYLTQAQDTYTEGLYIDY 667
                      *********************993333.233448899999*********9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.5
                      --SETTTT-BCH CS
                      xxxxxxxxxxxx RF
  Glyco_hydro_3_C 193 tplYpeGlglsY 204
                      +p + +G+glsY
       CCE28613.1 676 EPRFAFGHGLSY 687
                      577********9 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.1   1.8e-24     1e-20       2      69 ..     813     884 ..     812     885 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1.8e-24
                 EEEEEEEESS.-STTSBS-EEEEEEEEE.E-TT-EEEEEEEEECGGG-EEETTTTEEE--..SCEEEEEEES CS
    Fn3-like   2 vvqlYvsdpe.ssverpvkeLkgFekve.LapGesktvtftldrkdlsvwdeekqkwvve..pGeytvlvgt 69 
                  vq Yv++p  ++ e+p  +L++Fek++ LapGes+ v++ l+rkdlsvwd+e q+wv++  +G y v++g+
  CCE28613.1 813 SVQAYVQFPLdAGYETPILQLRDFEKTRvLAPGESTIVELYLTRKDLSVWDVELQDWVIPavDGAYNVWIGN 884
                 69*****9974789**********************************************555********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 6043.24
//
Query:       CCE28614.1  [L=125]
Description: uncharacterized protein CPUR_02301 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-08   32.7  12.2    9.6e-08   31.9  12.2    1.3  1  Ribosomal_L34  Ribosomal protein L34


Domain annotation for each model (and alignments):
>> Ribosomal_L34  Ribosomal protein L34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9  12.2   5.3e-12   9.6e-08       7      42 ..      88     123 ..      82     124 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 5.3e-12
                    --HHHHHCSSSHHHHHHSHHHHHHHHHHHTTSSS-S CS
  Ribosomal_L34   7 PskrkRkrkhGFraRmstknGrkvLkrRraKGRkrL 42 
                     s+  +kr+ GF+ Rm++++Gr+++ rRr K R  L
     CCE28614.1  88 ASRYVQKRRLGFLVRMRSRTGRRIVLRRRLKKRTEL 123
                    478899***************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 910.61
//
Query:       CCE28615.1  [L=167]
Description: uncharacterized protein CPUR_02302 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-41  139.5   0.5    8.1e-41  139.2   0.5    1.1  1  PGA2      Protein trafficking PGA2


Domain annotation for each model (and alignments):
>> PGA2  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.2   0.5   4.5e-45   8.1e-41       2     138 .]      36     166 ..      35     166 .. 0.97

  Alignments for each domain:
  == domain 1  score: 139.2 bits;  conditional E-value: 4.5e-45
        PGA2   2 tnlsesfssltakdwirlvlivggYlllRPYleklfkklqekqrekeeekeeaeekaa..kkakvspnalRggeaksgesdedddegeeeedvakasgv 98 
                 +n+se fss+t++ wir+++i+ggY+llRPYl++l++k + +++e++++k+++++ ++   +++++pn++Rg ++k    de+d+eg++       +++
  CCE28615.1  36 HNISEGFSSMTTQGWIRVIVIAGGYMLLRPYLQQLITKGALRKMEADDKKAREADGSDelPHPELTPNEYRGIKEK-LYADEHDNEGAD-------GTG 126
                 79*************************************************9999888899*************85.9*********99.......*** PP

        PGA2  99 pewgkkarkrqkkvlkkleeeaeerkkeeeddkdiaelLe 138
                 ++wg+kar rq+++l++l+ee+e+r++++++d di+e+Le
  CCE28615.1 127 SDWGQKARVRQRQMLRELLEEDERRRAAQDEDADIQEFLE 166
                 ***************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1233.06
//
Query:       CCE28616.1  [L=490]
Description: related to monocarboxylate transporter 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-29  103.0  56.4    5.1e-23   81.6  36.1    2.1  2  MFS_1            Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6  36.1   2.8e-27   5.1e-23      17     307 ..     118     397 ..     101     400 .. 0.82
   2 !   29.0  20.8   2.7e-11   4.8e-07      66     165 ..     367     477 ..     367     484 .. 0.87

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 2.8e-27
       MFS_1  17 palplalaedlg......ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlgagalfpaga 107
                 ++   + +e ++      +++s+i ++ ++  ++++++s+++G + d++G+r+++l g +l ++g l+++ ++s ++ ++l   + ++lg +a+f a++
  CCE28616.1 118 SVG--TFQEYYQngplkeYTASQIAWIPSMQIFLMSFLSPFTGQIFDNYGPRPLMLGGSFLHVFG-LFMAsLSSKYYqFMLSQGLCSALGVSAIFLAAI 213
                 222..334444455666699*********************************************.5555477889955555556666777******** PP

       MFS_1 108 aliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkd 206
                   ++ wf+k +rg a+g++++g+slG ++ p+  + l+ s+g+ +++  +a++ l +++++ + ++ +++  +++ ++ +      +p+ +       +
  CCE28616.1 214 GTVSGWFKK-RRGTAFGIFATGSSLGGVVFPIMLSHLIRSVGYGWAMRTAAFIILALLIVANFAIRSRHVYGRKPLSRGL----LARPFHE-------S 300
                 *********.**********************************************999777777777777777777777....3344333.......5 PP

       MFS_1 207 pvlwillialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavlll 304
                  +l +ll++l+l+ +g+++   ++p+   +  g+  +l +++  ++++  ++++++  +g+l+dr+g  ++  la+ ++ ++++++ + +  ++a+ ++
  CCE28616.1 301 TFL-FLLVGLALIPLGLYTPINFIPTV-AKAEGMRdSLAQNL--ISIYNGASLVGRGASGFLADRFGLFNIFSLACYGAGICVMAVWIPGGGNDAATVA 395
                 555.5*********************7.******99999***..****************************************999999994444433 PP

       MFS_1 305 lvl 307
                  ++
  CCE28616.1 396 -FC 397
                 .33 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 2.7e-11
       MFS_1  66 llglllfalg.lllllfa...sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg......Wrav 153
                 +++l+++++g +++++++    +  + +++ vl Gl++ga+++++aal+a+++p ee g  +g+ +++ s+G +++ +++g+++  s+g      + ++
  CCE28616.1 367 IFSLACYGAGiCVMAVWIpggGNDAATVAFCVLFGLFSGAYVALMAALVARISPLEEVGYRNGISQLFGSVGGLITSPIAGAILqGSGGanglkaFAGT 465
                 57888889994455557456677889**********************************************************566669999999999 PP

       MFS_1 154 fyilaivsllaf 165
                 f++++  +++a+
  CCE28616.1 466 FMLVGTTGIVAA 477
                 999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3492.00
//
Query:       CCE28617.1  [L=432]
Description: probable translation elongation factor EF-Tu precursor, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.3e-57  191.7   0.1    1.2e-56  191.3   0.1    1.1  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    6.4e-17   61.9   0.0    1.5e-16   60.7   0.0    1.6  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    1.4e-15   57.4   2.4    3.3e-15   56.2   2.4    1.7  1  GTP_EFTU_D2  Elongation factor Tu domain 2
      2e-05   24.7   0.0    3.6e-05   23.8   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0015   18.5   0.1     0.0039   17.1   0.0    1.7  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.029   14.0   0.2       0.15   11.7   0.0    2.0  2  cobW         CobW/HypB/UreG, nucleotide-binding domain
       0.14   11.9   0.3         18    5.1   0.1    2.3  2  PduV-EutP    Ethanolamine utilisation - propanediol utilisati


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.3   0.1   4.8e-60   1.2e-56       1     193 [.      53     246 ..      53     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: 191.3 bits;  conditional E-value: 4.8e-60
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEE CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavl 99 
                 k+++nig+ighvDhGKtTL+ +++++ ++   ++  +     +D+++eEr+rgiTi +a+i+++  t++++++++D+PGH+d++k++i+g++ +Dga++
  CCE28617.1  53 KPHVNIGTIGHVDHGKTTLSAAITKRQSEKGLANFLDY--GSIDKAPEERKRGITIATAHIEYS--TDNRHYSHVDCPGHADYIKNMITGAANMDGAII 147
                 579*********************88877666555554..35**********************..********************************* PP

                 EEETTTBSTHHHHHHHHHHHHTTTE.EEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB..........THHHHHH CS
    GTP_EFTU 100 vvdaveGvepqteevlrlalkegvp.iivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge..........gvktlle 186
                 vv+a++G +pqt+e+l la+++gv+ i+vf+NK+D + + e+ e+ve+  ++l      l+ yg++g+ ++pv++gSal +           ++++l++
  CCE28617.1 148 VVAASDGQMPQTREHLLLARQVGVQrIVVFVNKVDTIdDPEMLELVEMEMREL------LSTYGFEGD-DTPVIMGSALCALnnqkpeignnKIDELMK 239
                 *************************9***********999**********9**......********6.***********996677777777777**** PP

                 HHHHHSH CS
    GTP_EFTU 187 alvellp 193
                 a++e++p
  CCE28617.1 240 AVDEWIP 246
                 ***9998 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   5.8e-20   1.5e-16       1      86 [.     344     424 ..     344     429 .. 0.92

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 5.8e-20
                  --EEECCEEEEEEESSS.....SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TT CS
  GTP_EFTU_D3   1 sikphtkfeAqvyileke...rhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgs 86 
                  ++k+ht+f A++y+l+ke   rht ++++Yrp+ly+rt+d+++   ++       +e++++ ++++v+pGdnv++ v+l+ p a+e+  
   CCE28617.1 344 TVKAHTQFLASLYVLTKEeggRHTGFQEHYRPQLYLRTSDESV-DLTF-------PEGTEDASSKMVMPGDNVEMVVTLTYPNAVETEL 424
                  589**************************************99.5666.......77777889**********************9865 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   2.4   1.3e-18   3.3e-15       1      74 []     270     340 ..     270     340 .. 0.94

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 1.3e-18
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  Gtv+ grv++G+lk+ +e++i+g  ++ + i+++++ +etf++ +d+  ag+n G++v+++  ed +++G++++
   CCE28617.1 270 GTVVSGRVERGILKREEEIEIIG--KGSEVIKSKVTDIETFKKSCDQSQAGDNSGLLVRGIRRED-LRRGMVVC 340
                  9********************66..43455***********************************.9*****98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.4e-08   3.6e-05       2     102 ..      58     167 ..      57     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.4e-08
                 EEEEESTTSSHHHHHHHHHT................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvd 84 
                 ++ +G+   GK+tL  a+t+                +ka  ++k g T+ + +++++++++++  vD+pG  +       +++ +    ++d +++vv 
  CCE28617.1  58 IGTIGHVDHGKTTLSAAITKrqsekglanfldygsiDKAPEERKRGITIATAHIEYSTDNRHYSHVDCPGHAD------YIKNMITGAANMDGAIIVVA 150
                 889****************7777777777887775559999****************999**********333......46666666777999999998 PP

                 TTTTCSHHHHHHHHHHHH CS
    MMR_HSR1  85 aseeklkpldeeleelle 102
                 as++++ + +e+l    +
  CCE28617.1 151 ASDGQMPQTREHLLLA-R 167
                 8855555554444333.3 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.4   8.7e+03     106     123 ..      62      79 ..      58      83 .. 0.75
   2 !   17.1   0.0   1.5e-06    0.0039      13      74 ..     139     199 ..     114     211 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.4
                  CSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 106 GqSGvGKStLinallpel 123
                  G+   GK+tL  a++ ++
   CCE28617.1  62 GHVDHGKTTLSAAITKRQ 79 
                  666679999998887764 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.5e-06
                  EES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-.EEEEEEE-GGG--HHHHHHHHHHHHHH CS
  RsgA_GTPase  13 vaNvdqllivvslkepelslnlldrfLvlaeekgi.epvivlnKiDlleeeeeleelkeelea 74 
                  +aN+d ++ivv++++   ++ +    L+la + g+ ++v+ +nK+D +++ e le ++ e+++
   CCE28617.1 139 AANMDGAIIVVAASD--GQMPQTREHLLLARQVGVqRIVVFVNKVDTIDDPEMLELVEMEMRE 199
                  8*************4..4445556677777777773677788*********977766666655 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       0.3   7.6e+02       7      30 ..      62      85 ..      57      89 .. 0.79
   2 ?   11.7   0.0   5.8e-05      0.15     104     169 ..     134     200 ..     123     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.3
                ESTTCCHHHHHHHHHCT--SS-EE CS
        cobW  7 GflGsGKTtLlnhllenraglkla 30
                G +  GKTtL  +++++++++ la
  CCE28617.1 62 GHVDHGKTTLSAAITKRQSEKGLA 85
                55667*****99999887777665 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 5.8e-05
                 HHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEE.EE-HHHHCHC..HHHHHHHHHHH CS
        cobW 104 eelksdltldavvavvDaknleaeeekieekaedqlaaadllv.lnKtDlldeeallekleerlrql 169
                 + ++ ++++d+ + vv a+  +  +++++ ++ +q+ +  ++v +nK+D++d+ ++le +e ++r+l
  CCE28617.1 134 NMITGAANMDGAIIVVAASDGQMPQTREHLLLARQVGVQRIVVfVNKVDTIDDPEMLELVEMEMREL 200
                 56778899***********999999************99987648*********9999999888876 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0069        18       6      24 ..      60      78 ..      56      85 .. 0.86
   2 ?    4.6   0.0    0.0099        25      39     116 ..     121     198 ..     106     207 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0069
   PduV-EutP  6 liGkvgsGKttLtqalkge 24
                 iG+v+ GKttL+ a++++
  CCE28617.1 60 TIGHVDHGKTTLSAAITKR 78
                69***********999875 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0099
   PduV-EutP  39 eviDtPGeylenrklysalivtsaeadvialvqdateeesvfppgf....asvfnkeviGiitkidlaedeenieaveelLk 116
                 + +D+PG    +  + + +i+ +a+ d   +v++a++ +   + +     ++v  + ++  + k+d+ +d e +e ve +++
  CCE28617.1 121 SHVDCPG----HADYIKNMITGAANMDGAIIVVAASDGQMPQTREHlllaRQVGVQRIVVFVNKVDTIDDPEMLELVEMEMR 198
                 4589999....4566677777788887766666666555444333211113444566777899*********9999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3258.57
//
Query:       CCE28618.1  [L=56]
Description: uncharacterized protein CPUR_02305 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-13   50.6   3.3    1.3e-13   50.4   3.3    1.0  1  Ribosomal_S14  Ribosomal protein S14p/S29e
  ------ inclusion threshold ------
       0.16   11.8   4.5        1.8    8.5   4.5    2.1  1  ZZ             Zinc finger, ZZ type


Domain annotation for each model (and alignments):
>> Ribosomal_S14  Ribosomal protein S14p/S29e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   3.3   1.5e-17   1.3e-13       2      52 ..       7      54 ..       6      56 .] 0.96

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1.5e-17
                   ------SS..CTTT---SSS--SSSEE-GGG-..EHHHHHHHTTT...TT-EE CS
  Ribosomal_S14  2 laklprnssptrirnrCrvtGrprGvirkfgL..sRicfRelAlkgelpGvkK 52
                   ++++pr +  +++++ Crv+ +  G+irk+ L  +R+cfRe+ ++   +G++K
     CCE28618.1  7 WNSRPRSY--GKGSRSCRVCKHTAGLIRKYDLnlCRQCFREKSKD---IGFVK 54
                   99******..*********************999***********...***99 PP

>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.5    0.0002       1.8       7      38 ..      21      47 ..      16      52 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0002
                -TTT-S..EESSEEEESSSSS-EE-HHHHHH.. CS
          ZZ  7 CdgCseapligvRyhclrcsdYDLCqsCfst.h 38
                C +C++  ++g      r  d +LC +Cf + +
  CCE28618.1 21 CRVCKH--TAGL----IRKYDLNLCRQCFREkS 47
                666666..4443....4556999*******933 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 423.64
//
Query:       CCE28619.1  [L=372]
Description: probable protein disulfide-isomerase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-58  193.8   0.3    1.6e-29  101.9   0.0    2.6  3  Thioredoxin    Thioredoxin
    1.8e-25   89.6   0.2    1.8e-25   89.6   0.2    2.2  1  ERp29          Endoplasmic reticulum protein ERp29, C-termina
    5.8e-18   65.3   0.0    2.8e-09   37.4   0.0    2.7  2  Thioredoxin_2  Thioredoxin-like domain
    9.7e-17   61.2   0.0    4.7e-08   32.7   0.0    2.2  2  OST3_OST6      OST3 / OST6 family, transporter family
    7.4e-11   42.1   0.0    4.5e-05   23.6   0.0    2.4  2  Thioredoxin_7  Thioredoxin-like
    1.7e-08   34.4   0.0     0.0031   17.4   0.0    2.4  2  AhpC-TSA       AhpC/TSA family
    2.5e-08   34.1   0.0     0.0011   19.3   0.0    3.0  2  Thioredoxin_8  Thioredoxin-like
      4e-06   26.6   0.0     0.0084   15.9   0.0    2.5  2  Thioredoxin_9  Thioredoxin
    1.4e-05   25.1   0.4     0.0026   17.7   0.3    3.1  2  Thioredoxin_6  Thioredoxin-like domain
     0.0002   21.3   0.0     0.0097   15.9   0.0    2.7  2  HyaE           Hydrogenase-1 expression protein HyaE
    0.00045   20.4   0.3       0.39   11.0   0.0    3.0  2  Glutaredoxin   Glutaredoxin
    0.00055   19.7   2.0       0.22   11.2   0.1    2.5  2  Redoxin        Redoxin
     0.0011   19.1   0.1      0.026   14.7   0.0    2.5  2  ERp29_N        ERp29, N-terminal domain
     0.0014   18.7   0.1       0.67   10.0   0.0    2.9  3  Thioredoxin_3  Thioredoxin domain
      0.002   18.0   0.0       0.14   11.9   0.0    2.3  2  TraF           F plasmid transfer operon protein
  ------ inclusion threshold ------
      0.066   13.4   5.9        8.3    6.5   0.1    4.1  5  Thioredoxin_4  Thioredoxin
        0.1   12.3   0.2        3.6    7.3   0.1    3.1  3  DSBA           DSBA-like thioredoxin domain


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.0   1.5e-32   1.6e-29       2     103 .]      22     127 ..      21     127 .. 0.95
   2 !   89.5   0.0   1.1e-28   1.2e-25       2     102 ..     143     247 ..     142     248 .. 0.92
   3 ?   -2.7   0.0       5.5   5.8e+03      36      50 ..     286     300 ..     275     308 .. 0.73

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 1.5e-32
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT...TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE.EEEEEESS-HHH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd...kvklakvdvdenedlakkyevegiPtlklfkngk.evkkyegareke 95 
                  v+ lt +nF++ v k+ k+ lveF+ApwCghCk laP++e+la+++++   kv++akvd+d+++ l k+++v+g+Ptlk f     ++++y+ +r+ e
   CCE28619.1  22 VIDLTPANFDQVVLKSGKPTLVEFFAPWCGHCKTLAPVYEELASAFEHaksKVQIAKVDADAERALGKRFGVQGFPTLKYFDGKTdKPEDYKSGRDLE 119
                  67899****************************************999999****************************9987767************ PP

                  HHHHHHHH CS
  Thioredoxin  96 klaaflkk 103
                  +l af++k
   CCE28619.1 120 SLSAFIAK 127
                  ****9975 PP

  == domain 2  score: 89.5 bits;  conditional E-value: 1.1e-28
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT..TSEEEEEETTT..SHHHHHHTT-SSSSEEEEEETTE.EEEEEESS-HH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd..kvklakvdvde..nedlakkyevegiPtlklfkngk.evkkyegarek 94 
                  ++ lt+e+F e++ + +k+vlv F+ApwCghCk laP++e++a ++++  +v++akvd+++  ++ +ak+ +v+++Pt+k f++g  e + y+g+r++
   CCE28619.1 143 IVMLTDETFAETIGS-DKNVLVAFTAPWCGHCKTLAPVFESVALDFSGdkNVVIAKVDAEAanSKAVAKENGVSSYPTIKWFPAGSkEGEAYSGERTE 239
                  6789***********.*******************************999********98621567899****************978999******* PP

                  HHHHHHHH CS
  Thioredoxin  95 eklaaflk 102
                  e++ +f++
   CCE28619.1 240 ESFLEFVN 247
                  **999987 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.5
                  HHHHHHHHHHHCTTT CS
  Thioredoxin  36 laPeleklaeelkdk 50 
                  +a e++k+a e++++
   CCE28619.1 286 IAAEVKKAAGEYSEE 300
                  777788888888764 PP

>> ERp29  Endoplasmic reticulum protein ERp29, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.2   1.7e-28   1.8e-25       1      96 []     265     357 ..     265     357 .. 0.99

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 1.7e-28
       ERp29   1 GrieeldelaaefvaaakaereelleeakkaaeklksekekkaaeyYvkvmekiaekgeeyvekElkRLekllkkgklaaekkdelkkrlNILsaF 96 
                 G+i++ld+l+a+f++ a  ++e++++e+kkaa ++++e++ ++a+yYv+v++k+++++ +y++kEl+RLe++l++g la++k+de+++++NIL++F
  CCE28619.1 265 GTIDALDSLVARFTGGA--KMEDIAAEVKKAAGEYSEEAKYQYAKYYVRVFDKLSASD-NYAAKELARLEGILAQGGLAPSKRDEIHSKTNILRRF 357
                 99************999..**************************************9.***********************************99 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   2.7e-12   2.8e-09       3      91 ..      36     107 ..      34     123 .. 0.87
   2 !   25.2   0.0   1.7e-08   1.8e-05       3     107 ..     156     244 ..     154     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 2.7e-12
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk.e 91 
                    ++gkp+lv f +p+C+ Ck l  + +el +   +      +++++ ++++++ ++e++           l++++gv+g+Pt+ ++dgk  
     CCE28619.1  36 KSGKPTLVEFFAPWCGHCKTLAPVYEELAS--AF-----EHAKSKVQIAKVDADAERA-----------LGKRFGVQGFPTLKYFDGKtD 107
                    78**************************22..23.....68899999*****999997...........******************962 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 1.7e-08
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlp 97 
                    g+ k vlv ft+p+C+ Ck l  +++++ +     l+f  +++++++ v+   a++k           ++a++ gv++ Pti  f+ g+++ + + 
     CCE28619.1 156 GSDKNVLVAFTAPWCGHCKTLAPVFESV-A-----LDFSGDKNVVIAKVDAEAANSK-----------AVAKENGVSSYPTIKwFPAGSKEGEAYS 234
                    56799***********************.3.....3333666655555555555555...........69***********886888889999999 PP

  Thioredoxin_2  98 Gyvpaeelea 107
                    G  ++e +++
     CCE28619.1 235 GERTEESFLE 244
                    9999988876 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   4.5e-11   4.7e-08       3     142 ..      12     134 ..      10     141 .. 0.85
   2 !   26.8   0.0   2.8e-09     3e-06      11     139 ..     141     252 ..     134     256 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 4.5e-11
   OST3_OST6   3 llklakksngviklndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlll 101
                 l+++a++ + vi+l+ +n+++++ ++   ++v ++        C  C+ ++p +e +a+++ +     ++k+  akvd d  + + +++g++  P l +
  CCE28619.1  12 LTAVAAAGSAVIDLTPANFDQVVLKSGKPTLVEFFAP-----WCGHCKTLAPVYEELASAFEHA----KSKVQIAKVDADAERALGKRFGVQGFPTLKY 101
                 6677777788999999999999986666666666654.....4*********************....48***************************** PP

   OST3_OST6 102 fppkkgpkeskkkdtydfsrggfdaealakfisertgvkir 142
                 f  k+  +   k+++y+    g d e+l +fi+++tgvk +
  CCE28619.1 102 FDGKT--D---KPEDYKS---GRDLESLSAFIAKKTGVKPK 134
                 *9944..3...6788875...789*************8765 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 2.8e-09
   OST3_OST6  11 ngviklndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfde..gkdvFqklglnsaPhlllfppkkg 107
                 + ++ l+de++ e +    d +v+v +Ta      C  C+ ++p fe va  +  d     k+++ akvd +   +k v ++ g++s P +  fp+ + 
  CCE28619.1 141 SEIVMLTDETFAETIG--SDKNVLVAFTAP----WCGHCKTLAPVFESVALDFSGD-----KNVVIAKVDAEAanSKAVAKENGVSSYPTIKWFPAGS- 227
                 579999*****99996..67789******9....7*******************99.....69*******955559999999**************33. PP

   OST3_OST6 108 pkeskkkdtydfsrggfdaealakfisertgv 139
                  k   + + y     + + e++ +f++++ g+
  CCE28619.1 228 -K---EGEAYSG---ERTEESFLEFVNKKAGT 252
                 .3...5555554...55788888999888775 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.6e-06     0.009      13      61 ..      34      82 ..      28     104 .. 0.67
   2 !   23.6   0.0   4.2e-08   4.5e-05      11      78 ..     152     220 ..     145     225 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.6e-06
                   HHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS- CS
  Thioredoxin_7 13 aaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvt 61
                     ++gkp lv f a wc++C++l+ + ++  +  + +++k+   +vd +
     CCE28619.1 34 VLKSGKPTLVEFFAPWCGHCKTLAPVYEELASAFEHAKSKVQIAKVDAD 82
                   6799******************987766655555546666666666654 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 4.2e-08
                    HHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---...SSEE CS
  Thioredoxin_7  11 akaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqg...vPvv 78 
                    a+   + k+vlv f+a wc++C++l+ +f+s   ++   ++++v  +vd +  + +    +e+g   +P++
     CCE28619.1 152 AETIGSDKNVLVAFTAPWCGHCKTLAPVFESV-ALDFSGDKNVVIAKVDAEAANSKA-VAKENGvssYPTI 220
                    5555678**********************998.333334588888888888887777.4455444457776 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.9e-06    0.0031      24      69 ..      37      83 ..      20     131 .. 0.81
   2 !   14.8   0.0   1.9e-05     0.021      24      81 ..     157     213 ..     133     225 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.9e-06
                TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCT..TEEEEEEESSS CS
    AhpC-TSA 24 kgkpvvlffypkdwcpvCttelpalaklyeefker..gvevigvsvds 69
                +gkp+++ f++  wc +C+t +p +++l+ +f+++  +v++  v +d 
  CCE28619.1 37 SGKPTLVEFFAP-WCGHCKTLAPVYEELASAFEHAksKVQIAKVDADA 83
                79**********.*******************9661155555555554 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.9e-05
                 TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H CS
    AhpC-TSA  24 kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes 81 
                 ++k v++ f++  wc +C+t +p ++ ++ +f   +  vi+  + + +++k+ +++++
  CCE28619.1 157 SDKNVLVAFTAP-WCGHCKTLAPVFESVALDFSGDKNVVIAKVDAEAANSKAVAKENG 213
                 568888999988.*******************95444444444444456788877776 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     1e-06    0.0011       1      48 [.      38      85 ..      38     108 .. 0.86
   2 !   11.2   0.0   0.00034      0.36       2      56 ..     159     211 ..     158     225 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1e-06
                   .SEEEEEE--SSSHHHHHHHHHHHHHHHHHHH.TTSEEEEEEE-SS-HH CS
  Thioredoxin_8  1 gkvvlLyfgaswcppckaftpklkelyeklkk.kkkveivyvsldkkee 48
                   gk +l+ f+a wc +ck+  p   el + +++ k kv+i  v  d + +
     CCE28619.1 38 GKPTLVEFFAPWCGHCKTLAPVYEELASAFEHaKSKVQIAKVDADAE-R 85
                   699***************************989*********99985.4 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00034
                    SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGG CS
  Thioredoxin_8   2 kvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkk 56 
                    k vl+ f a wc +ck+  p    +  +++ +k+v  v  ++d +  + +++ k+
     CCE28619.1 159 KNVLVAFTAPWCGHCKTLAPVFESVALDFSGDKNV--VIAKVDAEAANSKAVAKE 211
                    6799*******************999999944444..444555554555555555 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0     0.002       2.1      45      80 ..      42      77 ..      23     107 .. 0.78
   2 !   15.9   0.0     8e-06    0.0084       5      67 ..     122     184 ..     119     237 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.002
                   EEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-H CS
  Thioredoxin_9 45 ilvltedwCgDaavnvPvlakiaelnpnievkillr 80
                   ++ + ++wCg +    Pv +++a++ +  + k+ + 
     CCE28619.1 42 LVEFFAPWCGHCKTLAPVYEELASAFEHAKSKVQIA 77
                   555779*****************9887777666554 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 8e-06
                    HHHHHTS-HHHHHHHHHHHHHHHHH---HHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHH CS
  Thioredoxin_9   5 eeyleemtkenkermlrvykkvelseeteekiksiekklkilvltedwCgDaavnvPvlakia 67 
                    +++++++t  + +++l++  ++ + +++  +++  ++k  ++++t++wCg +    Pv++ +a
     CCE28619.1 122 SAFIAKKTGVKPKKQLEMPSEIVMLTDETFAETIGSDKNVLVAFTAPWCGHCKTLAPVFESVA 184
                    5677777777778888888888888888777777777788889*****************998 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00063      0.67       8      73 ..      59     127 ..      20     127 .. 0.70
   2 !   17.7   0.3   2.4e-06    0.0026       8     184 .]      59     248 ..      52     248 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00063
                    HHHHHHHHTTT-T.TSEEEEE--HH...HHHHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHHHH CS
  Thioredoxin_6   8 eseiFekvakelkgdvrfgvtkske...vadklgvke.pavllfrkfdeekvkydgekitvddlkkfiek 73 
                     +e++ ++++  k++v+ + + +++   + + +gv++ p++++f ++++++++y+    + ++l+ fi+k
     CCE28619.1  59 VYEELASAFEHAKSKVQIAKVDADAeraLGKRFGVQGfPTLKYFDGKTDKPEDYKSG-RDLESLSAFIAK 127
                    455555666666666666655433333233338888888888888888888888887.688888888875 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 2.4e-06
                    HHHHHHHHTTT-T.TSEEEEE--HH...HHHHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHHHHH.........---S.EEE-SHHHHHH CS
  Thioredoxin_6   8 eseiFekvakelkgdvrfgvtkske...vadklgvke.pavllfrkfdeekvkydgekitvddlkkfiekn.........slpl.vreltpenaee 89 
                     +e++ ++++  k++v+ + + +++   + + +gv++ p++++f ++++++++y+    + ++l+ fi+k+          +p  +  lt+e++ e
     CCE28619.1  59 VYEELASAFEHAKSKVQIAKVDADAeraLGKRFGVQGfPTLKYFDGKTDKPEDYKSG-RDLESLSAFIAKKtgvkpkkqlEMPSeIVMLTDETFAE 153
                    56777777777777777776653334434444************************9.8**********97333333333355578889******* PP

                    HHTSS--EEEEEEE-TTSTTH.HHHHHHHHHHHHHTTT..T-EEEEEETT..GGHHHHHHTT--GGG-SEEEEEESSSS-EEEETTSS--HHHHHH CS
  Thioredoxin_6  90 lfeeglppllllflkkddeet.eklkkaiekvakefkd..kinfaladak..sfkrpleylglsssdlPvivivdsashkykyppkdefspeklke 180
                     + +++++l+++  +    ++ + l  ++e+va +f++  ++ +a +da+  + k + ++ g+s  + P+i  +    +k   ++++e ++e++ e
     CCE28619.1 154 TIGSDKNVLVAFTAP-W-CGHcKTLAPVFESVALDFSGdkNVVIAKVDAEaaNSKAVAKENGVS--SYPTIKWFPA-GSKEGEAYSGERTEESFLE 244
                    *****8866666664.3.44526666677*******9733466666666675557788899998..9999988773.3443456788888888888 PP

                    HHHH CS
  Thioredoxin_6 181 Flkd 184
                    F+++
     CCE28619.1 245 FVNK 248
                    8875 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.2e-06    0.0097      49      92 ..      59     104 ..      20     107 .. 0.88
   2 ?    2.3   0.0      0.15   1.6e+02      63      92 ..     196     225 ..     179     231 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.2e-06
                 HHHHHHCT-TTS-EEEEEE..THHHHHHHHHCCT-TSSSEEEEEET CS
        HyaE  49 vlpEllkaFpnalraavva..dreqeealaerfgvlktPsllflrd 92 
                 v  El  aF++a+  + +a  d + e al++rfgv+ +P+l ++ +
  CCE28619.1  59 VYEELASAFEHAKSKVQIAkvDADAERALGKRFGVQGFPTLKYFDG 104
                 6789******99988877768999****************988865 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.15
                 EEEEETHHHHHHHHHCCT-TSSSEEEEEET CS
        HyaE  63 aavvadreqeealaerfgvlktPsllflrd 92 
                 a v a+ ++++a+a++ gv+ +P++  +  
  CCE28619.1 196 AKVDAEAANSKAVAKENGVSSYPTIKWFPA 225
                 3344578899*************9877755 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.013        14       6      54 ..      47     100 ..      39     106 .. 0.68
   2 !   11.0   0.0   0.00037      0.39       2      53 ..     163     220 ..     162     221 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.013
                   STSSHHHHHHHHHHHHTT.......GGEEEEEGCCSHHHHHHHHHHHTSSSSSEEE CS
  Glutaredoxin   6 kptCpyCkkakrlLkelg.......vkfeeidvdkdeeireelkelsgvrtvPqvf 54 
                    p+C++Ck    + +el         k+++  vd+d  +  +l ++ gv+ +P++ 
    CCE28619.1  47 APWCGHCKTLAPVYEELAsafehakSKVQIAKVDAD--AERALGKRFGVQGFPTLK 100
                   499999999877776666333333255666666664..778888888999999884 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00037
                   EEEESTSSHHHHHHHHHHHHTTGG......EEEEEGCCSHHHHHHHHHHHTSSSSSEE CS
  Glutaredoxin   2 vlftkptCpyCkkakrlLkelgvk......feeidvdkdeeireelkelsgvrtvPqv 53 
                   v ft p+C++Ck    ++++  ++      + +  vd++++  +++ + +gv++ P++
    CCE28619.1 163 VAFTAPWCGHCKTLAPVFESVALDfsgdknVVIAKVDAEAANSKAVAKENGVSSYPTI 220
                   679***************9999665555568899999999888888888899999997 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00021      0.22      23      65 ..      35      75 ..      16     136 .. 0.72
   2 !    7.6   0.3    0.0028       2.9      28      83 ..     158     211 ..     144     221 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
                HHHHTTSEEEEEEESTTT-HHHHHTHH.HHHTHHHHHHCSTTTE CS
     Redoxin 23 lsefkgkkvvvnfvpgafcPtCsaehp.yleklaellkekgvdv 65
                l++  gk+++v f++  +c+ C++ +p y+e  +++ ++k   +
  CCE28619.1 35 LKS--GKPTLVEFFAP-WCGHCKTLAPvYEELASAFEHAKSKVQ 75
                444..999********.**********76666666644443333 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0028
                 TSEEEEEEESTTT-HHHHHTHHHHHTH.HHHHHCSTTTEEEEEESSSHHHHHHHHHT CS
     Redoxin  28 gkkvvvnfvpgafcPtCsaehpylekl.aellkekgvdvvavvadndafvkefwgke 83 
                 +k+v+v f +  +c+ C++ +p +e +  ++  +++ +vv+  +d +a  +++++ke
  CCE28619.1 158 DKNVLVAFTAP-WCGHCKTLAPVFESVaLDF--SGDKNVVIAKVDAEAANSKAVAKE 211
                 46655555555.**********666661455..333444445555555555555553 PP

>> ERp29_N  ERp29, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.4e-05     0.026       6     121 ..      22     131 ..      16     133 .. 0.72
   2 ?    1.5   0.0      0.29     3e+02       9     118 ..     146     249 ..     141     254 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-05
                 -EEE-TTTHHHHHTTS.SEEEEEEEESS--SHHHHHHHHHHHHHHHH-SSEEEEEEEEBSSSS-TTHHHHHHTT--TTC-SEEEEESSSTTSEEE--TT CS
     ERp29_N   6 avdldevtfekvvekf.kyslvkfdtayPyGekheaftalakeaskateellvaevGikdyGekenkelgerykvdkesyPviflfkGdaeepvdlpad 103
                 ++dl    f++vv k+ k +lv f    P+    + +  +  e+ +++ e   ++v i       +++lg+r+ v+   +P+++ f G++++p d+  +
  CCE28619.1  22 VIDLTPANFDQVVLKSgKPTLVEFFA--PWCGHCKTLAPVY-EELASAFEHAKSKVQIAKVDADAERALGKRFGVQ--GFPTLKYFDGKTDKPEDY--K 113
                 56777777877776654667777765..4444333444433.4555555566667777777778899*******96..69****************..5 PP

                 S---HHHHHHHHHHHSS- CS
     ERp29_N 104 gevtvdalkkflkaqtal 121
                 +   +++l +f+ ++t++
  CCE28619.1 114 SGRDLESLSAFIAKKTGV 131
                 5567899*****999987 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.29
                 E-TTTHHHHHTTSSEEEEEEEESS--SHHH..HHHHHHHHHHHHH-SSEEEEEEEEBSSSS-TTHHHHHHTT--TTC-SEEEEESSSTTSEEE--TTS- CS
     ERp29_N   9 ldevtfekvvekfkyslvkfdtayPyGekh..eaftalakeaskateellvaevGikdyGekenkelgerykvdkesyPviflfkGdaeepvdlpadge 105
                 l + tf  ++   k +lv f   +    k     f+++a++ s   +++++a+v        + k++++   v   syP+i+ f   ++e   +   ge
  CCE28619.1 146 LTDETFAETIGSDKNVLVAFTAPWCGHCKTlaPVFESVALDFS-GDKNVVIAKVDA---EAANSKAVAKENGV--SSYPTIKWFPAGSKEGEAY--SGE 236
                 6666777777777777777766655444431134666664433.456666776643...23334444444444..4688888888666666666..666 PP

                 --HHHHHHHHHHH CS
     ERp29_N 106 vtvdalkkflkaq 118
                  t +++ +f++++
  CCE28619.1 237 RTEESFLEFVNKK 249
                 6777766666655 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00063      0.67       6      58 ..      46     105 ..      41     108 .. 0.77
   2 ?    5.1   0.0     0.022        23       5      53 ..     163     220 ..     159     223 .. 0.62
   3 ?   -2.1   0.1       3.9   4.2e+03      27      45 ..     284     303 ..     275     307 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00063
                    ESSSSTTCH...HHHHHHHHHCHCCTCECEEECC.TTHHHH..HHCT-SSSSEE.ECTTC CS
  Thioredoxin_3   6 lgpgCakCp...klekavkeaaaekgikaevekv.tdfeei..ekygVmsvPal.vidgk 58 
                    + p C +C+    +++ +++a +  + k+++ kv  d e    +++gV+  P+l + dgk
     CCE28619.1  46 FAPWCGHCKtlaPVYEELASAFEHAKSKVQIAKVdADAERAlgKRFGVQGFPTLkYFDGK 105
                    5788*****555556666666777788889999986666555************999998 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.022
                    E.E.SSSSTTCHHHHHHHHHHCHC....CT.CECEEECC.TTHHHH.HHCT-SSSSEE CS
  Thioredoxin_3   5 v.l.gpgCakCpklekavkeaaae....kg.ikaevekv.tdfeei.ekygVmsvPal 53 
                    v +  p C +C++l+ +++++a +    k+ + a+v+    +++ + +++gV s P++
     CCE28619.1 163 VaFtAPWCGHCKTLAPVFESVALDfsgdKNvVIAKVDAEaANSKAVaKENGVSSYPTI 220
                    5442455*****9999999988651111333444666553445555788888888875 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.9
                    CTCECEEECC.TTHHHHHHC CS
  Thioredoxin_3  27 kgikaevekv.tdfeeieky 45 
                    ++i aev+k+  +++e +ky
     CCE28619.1 284 EDIAAEVKKAaGEYSEEAKY 303
                    45788888887777776666 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00013      0.14     133     205 ..      42     108 ..      32     110 .. 0.80
   2 ?    3.5   0.0     0.052        54     129     158 ..     158     187 ..     153     228 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
        TraF 133 LlfFyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpksqk 205
                 L+ F+++ c+ c+ +ap+++++a  ++ +   V++ +           ++   +r+gv+ +P+l  +d k++k
  CCE28619.1  42 LVEFFAPWCGHCKTLAPVYEELASAFEHAKSKVQIAKVDA------DAERALGKRFGVQGFPTLKYFDGKTDK 108
                 778********************99877766666665533......23456666**********999988775 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.052
        TraF 129 keygLlfFyrgkcpyceaqapilqafadky 158
                 ++  L+ F ++ c+ c+ +ap+ +++a ++
  CCE28619.1 158 DKNVLVAFTAPWCGHCKTLAPVFESVALDF 187
                 5678999***************99887665 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0079       8.3      14      42 ..      39      67 ..      36      89 .. 0.81
   2 ?   -0.4   0.0         1   1.1e+03     124     158 ..      77     113 ..      61     121 .. 0.60
   3 ?    4.9   0.2     0.024        26      13      55 ..     158     198 ..     154     209 .. 0.75
   4 ?    2.5   0.0      0.13   1.4e+02     121     162 ..     197     244 ..     182     248 .. 0.73
   5 ?   -1.4   0.2       2.1   2.2e+03      67     105 ..     288     325 ..     281     370 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0079
                   SEEEEEEE-TT-HHHHHHHHHHHHHHHHH CS
  Thioredoxin_4 14 pvtvieyedlrCphCakfeeeveklleey 42
                   + t++e+    C hC++++  +e+l + +
     CCE28619.1 39 KPTLVEFFAPWCGHCKTLAPVYEELASAF 67
                   679***************99999887765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1
                    HHHHHHHHHH..HHHT--SS-EEEETTEEE-TT--HH CS
  Thioredoxin_4 124 alveaeskea..kkagiestPtfiingekveepqtye 158
                    a+v a+ ++a  k+ g+++ Pt+   + k ++p +y+
     CCE28619.1  77 AKVDADAERAlgKRFGVQGFPTLKYFDGKTDKPEDYK 113
                    3344444444447779999999987555556666665 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.024
                    -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE- CS
  Thioredoxin_4  13 ApvtvieyedlrCphCakfeeeveklleeyidtGkvkfiirdf 55 
                     ++++++++   C hC++++   e +  ++  +G+  ++i ++
     CCE28619.1 158 DKNVLVAFTAPWCGHCKTLAPVFESVALDF--SGDKNVVIAKV 198
                    5889**************998877777776..66666665555 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.13
                    --HHHHHHHHHHHHHHT--SS-EEEE......TTEEE-TT--HHHHHH CS
  Thioredoxin_4 121 kldalveaeskeakkagiestPtfii......ngekveepqtyeelka 162
                    k+da++++ ++ ak++g++s Pt+         ge +++  t e++ +
     CCE28619.1 197 KVDAEAANSKAVAKENGVSSYPTIKWfpagskEGEAYSGERTEESFLE 244
                    7788999999999**********9755555555555666666666555 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 2.1
                    HHHHHTT--TTHHHHHHHHHHHHTHHHHTTS-HHHHH.. CS
  Thioredoxin_4  67 amaarcageespeaflaikallysqqeewaeslkelaae 105
                    a + ++age+s+ea   + +++ +  ++ ++s +++aa+
     CCE28619.1 288 AEVKKAAGEYSEEAKYQYAKYYVRVFDKLSAS-DNYAAK 325
                    55555666665333333333222222222222.233322 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0034       3.6       1      36 [.      41      78 ..      41      90 .. 0.80
   2 ?    1.1   0.0      0.27   2.8e+02     151     176 ..      79     105 ..      69     114 .. 0.79
   3 ?    0.2   0.0      0.53   5.6e+02       9      27 ..     169     187 ..     161     215 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0034
                EEEEEEBTTBHHHHHHHHHHHHHHHHC..CTEEEEEEE CS
        DSBA  1 tvdeffDvlCPyCylgkerleklaars..pdvkvvlrp 36
                t++eff   C++C++ ++++e+la++    + kv++  
  CCE28619.1 41 TLVEFFAPWCGHCKTLAPVYEELASAFehAKSKVQIAK 78
                6899********************99866455665554 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHTT-SSSSEEEE.TTC CS
        DSBA 151 eavrentaaaqslgvtGvPtvvv.dgk 176
                  + + ++a++++ gv+G Pt    dgk
  CCE28619.1  79 VDADAERALGKRFGVQGFPTLKYfDGK 105
                 5567789999*********98554665 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.53
                 TBHHHHHHHHHHHHHHHHC CS
        DSBA   9 lCPyCylgkerleklaars 27 
                  C++C++ ++++e++a   
  CCE28619.1 169 WCGHCKTLAPVFESVALDF 187
                 69*******9999987555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2548.26
//
Query:       CCE28620.1  [L=74]
Description: uncharacterized protein CPUR_02307 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-17   61.4   0.1    6.2e-17   61.2   0.1    1.1  1  HSBP1           Heat shock factor binding protein 1
  ------ inclusion threshold ------
      0.011   15.6   0.3      0.097   12.5   0.3    2.0  1  Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain o
      0.016   15.5   0.0      0.019   15.3   0.0    1.1  1  CLZ             C-terminal leucine zipper domain of cyclic nu
      0.049   13.7   0.0      0.058   13.4   0.0    1.0  1  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
      0.099   12.7   0.2       0.11   12.5   0.2    1.1  1  DUF1664         Protein of unknown function (DUF1664)
       0.12   12.3   0.9        0.6   10.0   0.2    1.9  2  DELLA           Transcriptional regulator DELLA protein N ter


Domain annotation for each model (and alignments):
>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.1   2.1e-20   6.2e-17       2      46 ..      22      66 ..      21      70 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 2.1e-20
       HSBP1  2 eLtavVenlLqqlqdkFqtmsdqilsriDdMssriDdLEksiadl 46
                +++a+Ve+lL+ +++kF ++s++i+ ++DdMs+r+++LE+ ++  
  CCE28620.1 22 DVSAAVEDLLNTMSNKFASVSSEIFAKMDDMSRRLENLEAALQAG 66
                899*************************************99875 PP

>> Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   3.3e-05     0.097      20      43 ..      27      61 ..      25      63 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.3e-05
                    HHHHHHHHHHH...........HHHHHHHHHHHHH CS
  Matrilin_ccoil 20 VeseiqaLtqk...........LeavtkRlealEn 43
                    Ve+ +++++ k            +++++Rle lE 
      CCE28620.1 27 VEDLLNTMSNKfasvsseifakMDDMSRRLENLEA 61
                    7777777777777777777777***********96 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   6.2e-06     0.019      36      70 ..      27      61 ..      11      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.2e-06
         CLZ 36 LessLeaLqtrlarLlaeyessqrkLkqRitkLEk 70
                +e  L+++ +++a + +e  +    + +R+++LE+
  CCE28620.1 27 VEDLLNTMSNKFASVSSEIFAKMDDMSRRLENLEA 61
                6788******************************7 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.9e-05     0.058      31      73 ..      22      64 ..      17      68 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
  Baculo_PEP_C 31 qilaqlatlldaietqLnalsedlksllaeldtrldtlltnLt 73
                   ++a+++ ll+++ +++ ++s+++ + + ++++rl++l ++L+
    CCE28620.1 22 DVSAAVEDLLNTMSNKFASVSSEIFAKMDDMSRRLENLEAALQ 64
                  5778888888888888888888888888888888888888876 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   3.7e-05      0.11      39      79 ..      27      67 ..      24      74 .] 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.7e-05
     DUF1664 39 lsdavesvskqleqvseslaatkrhLssridrvdkkldeqk 79
                 +d ++++s++  +vs+++ a  +++s+r++++++ l++ k
  CCE28620.1 27 VEDLLNTMSNKFASVSSEIFAKMDDMSRRLENLEAALQAGK 67
                578899*****************************999755 PP

>> DELLA  Transcriptional regulator DELLA protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.096   2.9e+02      17      33 ..      21      37 ..      15      48 .. 0.66
   2 ?   10.0   0.2    0.0002       0.6      15      39 ..      48      72 ..      41      74 .] 0.85

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.096
       DELLA 17 adVAqkLEqLemvlgaa 33
                 dV + +E L + +++ 
  CCE28620.1 21 PDVSAAVEDLLNTMSNK 37
                57888888888888443 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0002
       DELLA 15 dladVAqkLEqLemvlgaaqedgls 39
                 + d  ++LE+Le +l a +++++s
  CCE28620.1 48 KMDDMSRRLENLEAALQAGKDKEIS 72
                59999***********888887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1012  (0.0564449); expected 358.6 (0.02)
Passed bias filter:                      686  (0.038262); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 543.08
//
Query:       CCE28621.1  [L=875]
Description: uncharacterized protein CPUR_02308 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-10   39.1   2.8    2.2e-09   37.5   2.8    1.9  1  zf-rbx1        RING-H2 zinc finger domain
    2.2e-08   34.3   2.3    2.2e-08   34.3   2.3    2.1  2  zf-RING_2      Ring finger domain
    2.6e-06   27.2   5.2    1.4e-05   24.9   2.0    2.3  2  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
    3.4e-06   26.8   1.1    6.3e-06   26.0   1.1    1.5  1  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
    0.00018   21.5   5.2      0.003   17.5   1.4    2.9  3  zf-RING_UBOX   RING-type zinc-finger
    0.00019   21.2   0.9    0.00019   21.2   0.9    1.6  1  Prok-RING_4    Prokaryotic RING finger family 4
    0.00023   21.0   4.1    0.00073   19.4   4.2    1.8  1  zf-RING_5      zinc-RING finger domain
    0.00047   19.7   0.8     0.0011   18.5   0.8    1.5  1  Zn_ribbon_17   Zinc-ribbon, C4HC2 type
     0.0011   18.8   4.3     0.0012   18.6   1.3    2.1  2  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
     0.0038   17.2   0.8      0.011   15.8   0.8    1.7  1  zf-ANAPC11     Anaphase-promoting complex subunit 11 RING-H2 
  ------ inclusion threshold ------
      0.013   15.2   7.8      0.014   15.1   0.7    3.1  3  zf-RING_11     RING-like zinc finger
       0.11   10.3   0.4       0.16    9.8   0.4    1.1  1  DUF2921        Protein of unknown function (DUF2921)
       0.28   11.3   1.5       0.72   10.0   1.5    1.7  1  RINGv          RING-variant domain
       0.29   10.4   2.9        7.2    5.8   0.1    2.3  2  Tmpp129        Putative transmembrane protein precursor
       0.44   10.6   3.7        2.7    8.1   1.6    2.6  2  zf-C3H2C3      Zinc-finger


Domain annotation for each model (and alignments):
>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   2.8   1.8e-12   2.2e-09       2      55 .]     795     869 ..     794     869 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.8e-12
     zf-rbx1   2 tCaiCrneleeacieckapgdee.....................cpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                 +CaiCr+ l+ + ++  +++ ++                      + ++  C+H FH+ C+++Wl+ r +CP+cr
  CCE28621.1 795 DCAICREVLQVPVVRAGQQQASNasprsstshspssaisgvfarRMYMVTPCRHIFHTACLESWLRFRLQCPICR 869
                 69*******999999988888888899999*********99999677777************************8 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.3   1.6e+03       2      10 ..     795     803 ..     793     808 .. 0.74
   2 !   34.3   2.3   1.8e-11   2.2e-08      16      44 .]     841     869 ..     834     869 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.3
   zf-RING_2   2 eCpICleel 10 
                 +C+IC e l
  CCE28621.1 795 DCAICREVL 803
                 699997655 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.8e-11
   zf-RING_2  16 vlllpCgHvfhreClerwlrssstCPlCr 44 
                 ++++pC+H+fh  Cle wlr + +CP+Cr
  CCE28621.1 841 YMVTPCRHIFHTACLESWLRFRLQCPICR 869
                 44679***********************9 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.082        98       2      13 ..     796     807 ..     795     811 .. 0.86
   2 !   24.9   2.0   1.1e-08   1.4e-05      14      40 .]     842     868 ..     837     868 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.082
  zf-C3HC4_2   2 CpiCldmlkdps 13 
                 C+iC ++l+ p+
  CCE28621.1 796 CAICREVLQVPV 807
                 *********995 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 1.1e-08
  zf-C3HC4_2  14 vvtpCgHvfCqkCilrsLeekneCPlC 40 
                 +vtpC H f+  C+  +L+   +CP+C
  CCE28621.1 842 MVTPCRHIFHTACLESWLRFRLQCPIC 868
                 899************************ PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   1.1   5.3e-09   6.3e-06       1      41 []     796     868 ..     796     868 .. 0.97

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 5.3e-09
                 -TTT-S--SS-E...................................E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn..................................elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iC e+++ p+                                  ++++C+H f+++C++++l+     +CP+C
  CCE28621.1 796 CAICREVLQVPVvragqqqasnasprsstshspssaisgvfarrmyMVTPCRHIFHTACLESWLR--FRLQCPIC 868
                 9****************************************************************..8899**** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.041        50       1      13 [.     796     807 ..     796     818 .. 0.91
   2 !   17.5   1.4   2.5e-06     0.003      12      39 .]     842     866 ..     830     866 .. 0.89
   3 ?    3.8   0.4     0.049        58       1      11 [.     865     873 ..     865     875 .] 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.041
  zf-RING_UBOX   1 CpIClelftdPlv 13 
                   C IC+e+++ P v
    CCE28621.1 796 CAICREVLQVP-V 807
                   *********99.3 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 2.5e-06
  zf-RING_UBOX  12 lvlpCGHtFCreClwelskslegafkCP 39 
                   +v+pC H+F+  Cl    ++l+ +++CP
    CCE28621.1 842 MVTPCRHIFHTACL---ESWLRFRLQCP 866
                   5789**********...89********9 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.049
  zf-RING_UBOX   1 CpIClelftdP 11 
                   CpIC++++  P
    CCE28621.1 865 CPICRDEL--P 873
                   ******99..4 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.9   1.6e-07   0.00019      11      40 ..     841     872 ..     835     874 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.6e-07
  Prok-RING_4  11 ailepCgHlvCkeCfdsk.dls.sCPlCqrri 40 
                   ++ pC H++  +C++s+  +  +CP+C+ ++
   CCE28621.1 841 YMVTPCRHIFHTACLESWlRFRlQCPICRDEL 872
                  5799**************766689*****986 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   4.2   6.1e-07   0.00073      12      43 ..     838     869 ..     795     870 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6.1e-07
   zf-RING_5  12 eekfyltsCgHifCekClkkllekeavCpiCr 43 
                 ++ +++t+C Hif+ +Cl   l  + +CpiCr
  CCE28621.1 838 RRMYMVTPCRHIFHTACLESWLRFRLQCPICR 869
                 5679****************9999*******8 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.8   9.3e-07    0.0011      16      46 ..     838     866 ..     833     868 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.3e-07
  Zn_ribbon_17  16 grvvlcgvCeHvlHasCarewfenddlaeCp 46 
                   +r+++ + C H+ H++C+++w+      +Cp
    CCE28621.1 838 RRMYMVTPCRHIFHTACLESWLRFRL--QCP 866
                   78899999*************98877..776 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       0.6   7.1e+02      37      46 ..     793     802 ..     788     805 .. 0.75
   2 !   18.6   1.3     1e-06    0.0012      14      46 ..     840     871 ..     837     874 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.6
                 T-B-TTT--B CS
  zf-C3HC4_3  37 kkkCpiCrrp 46 
                 +  C iCr+ 
  CCE28621.1 793 SIDCAICREV 802
                 5679999986 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1e-06
                 -EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B CS
  zf-C3HC4_3  14 nvvllpCgHlvlCeeCaekllkrkkkCpiCrrp 46 
                   ++ pC+H+ +  +C+e++l+ + +CpiCr +
  CCE28621.1 840 MYMVTPCRHI-FHTACLESWLRFRLQCPICRDE 871
                 56789*****.********************86 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.8     9e-06     0.011      49      80 ..     843     871 ..     835     873 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9e-06
                 EBTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB CS
  zf-ANAPC11  49 lGkckhnfhlhcilkwletetskglcpmcrqt 80 
                 +  c+h+fh+ c+  wl     + +cp+cr++
  CCE28621.1 843 VTPCRHIFHTACLESWLRF---RLQCPICRDE 871
                 557**************85...679*****86 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2       0.1   1.2e+02       1       9 [.     795     803 ..     795     807 .. 0.82
   2 ?   15.1   0.7   1.2e-05     0.014      15      29 .]     841     855 ..     835     855 .. 0.86
   3 ?    0.0   0.1      0.62   7.5e+02       1       9 [.     864     872 ..     864     874 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.1
  zf-RING_11   1 eCsICLeef 9  
                 +C+IC e +
  CCE28621.1 795 DCAICREVL 803
                 8****8876 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.2e-05
  zf-RING_11  15 lfilpCsHtFHfkCI 29 
                  +++pC H+FH  C+
  CCE28621.1 841 YMVTPCRHIFHTACL 855
                 5789**********5 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.62
  zf-RING_11   1 eCsICLeef 9  
                 +C IC +e+
  CCE28621.1 864 QCPICRDEL 872
                 7****9886 PP

>> DUF2921  Protein of unknown function (DUF2921)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4   0.00013      0.16     801     846 ..     651     695 ..     642     709 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00013
     DUF2921 801 FLLPQvilNalwqskvkaLsksfYvGvTlvRllPhvYDliraasvv 846
                 F +PQ+  N l +++ +aL+  f +G +l+RllP +Y  +++++++
  CCE28621.1 651 FWVPQIYRNTLRNCR-RALTWPFIMGQSLLRLLPIAYFWVKQDNFL 695
                 889*******99986.8********************998877765 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.5    0.0006      0.72      25      48 .]     848     868 ..     838     868 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0006
                 CSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv  25 klvHesClekWldekeantqCeiC 48 
                 +++H +Cle Wl+      qC iC
  CCE28621.1 848 HIFHTACLESWLRF---RLQCPIC 868
                 689*********99...8999999 PP

>> Tmpp129  Putative transmembrane protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.006       7.2      48     109 ..     680     746 ..     671     751 .. 0.72
   2 ?    4.5   0.4     0.015        18     331     346 ..     856     871 ..     850     872 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.006
     Tmpp129  48 sllplgYflgllllsk.......vkaeelleletlwkvllllsvllailalvlv.vywsskkwsnhPiak 109
                  llp+ Yf++ +   +         +  ++ +++lw  +++l+++ +i     + + w+ + w  hP+ +
  CCE28621.1 680 RLLPIAYFWVKQ---DnflyantDPRAFMALTAWLWLQVVVLAAQHIISPRLGIpLAWTPDAWDYHPVLR 746
                 578999995433...0223434444567888899999999999966665555556************987 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.015
     Tmpp129 331 etwlsskvpCPtCRak 346
                 e+wl+ + +CP+CR +
  CCE28621.1 856 ESWLRFRLQCPICRDE 871
                 89************75 PP

>> zf-C3H2C3  Zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.24   2.8e+02       1      13 [.     796     808 ..     796     809 .. 0.95
   2 ?    8.1   1.6    0.0022       2.7      17      34 ..     846     868 ..     843     869 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.24
   zf-C3H2C3   1 CdnCglkLdypfv 13 
                 C +C   L++p+v
  CCE28621.1 796 CAICREVLQVPVV 808
                 99**********9 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0022
   zf-C3H2C3  17 CkHlvHakCade.....evCPkC 34 
                 C+H++H+ C +       +CP C
  CCE28621.1 846 CRHIFHTACLESwlrfrLQCPIC 868
                 *********77522222689999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (875 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5914.25
//
Query:       CCE28622.1  [L=182]
Description: uncharacterized protein CPUR_02309 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.13   12.9   0.0       0.29   11.8   0.0    1.6  1  Couple_hipA  HipA N-terminal domain


Domain annotation for each model (and alignments):
>> Couple_hipA  HipA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.6e-05      0.29      48      85 ..      66     113 ..      42     116 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.6e-05
                  B.....-CHHHHHHHHTTSBSSH..HHHHHHHHH...TSSTTSHHHHH CS
  Couple_hipA  48 y.....tskglpgffanlLPege..lrellarrr...gisskdelelL 85 
                  +       +++   f+n LPeg    r+ll+++    ++++ ++ +lL
   CCE28622.1  66 HslyarFGNRVASAFDNTLPEGAqrTRQLLKEQKereHAEKAKTAGLL 113
                  1334433578899**********6655666444311144455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1402.89
//
Query:       CCE28623.1  [L=478]
Description: uncharacterized protein CPUR_02310 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-33  113.4   8.6    9.2e-33  113.4   8.6    1.7  2  Rhomboid  Rhomboid family
  ------ inclusion threshold ------
       0.14   12.2   0.1        0.3   11.2   0.1    1.4  1  SirB      Invasion gene expression up-regulator, SirB


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.2   1.8e+03      64     107 ..     195     237 ..     166     244 .. 0.73
   2 !  113.4   8.6     1e-36   9.2e-33       3     148 ..     272     413 ..     270     415 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.2
                 HH-S...-EESSHHHHHHHHHHHHHHHHCCCCGS----HC...C CS
    Rhomboid  64 fsaesesplvGaSGaifgllgallvlvprnrkllrkliiallll 107
                 ++++ + p++G S  +   +ga  v   +n k++++  i++l+l
  CCE28623.1 195 IKPQFN-PMIGPSTQVLINMGARYVPCMHNVKEIQGSTIPVLFL 237
                 344443.9999999999999999999999988888888876655 PP

  == domain 2  score: 113.4 bits;  conditional E-value: 1e-36
                 GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S...-EESSHHHHHHHHHHHHHHHHCCCCGS---- CS
    Rhomboid   3 krgelwrlltsmflHagwlHllfNmlallvfGsplerrlGslrflllyllsglagsllsllfsaesesplvGaSGaifgllgallvlvprnrkllrkli 101
                 ++++++r++  mf+Hag++H++fN+l +l +++++e+++Gs rf+l+y+++g++g ++ + + a +   + GaSG +fg+++++l+  + ++ + r++ 
  CCE28623.1 272 QPNQWFRFILPMFMHAGLIHIGFNLLLQLTLAKEMEQVIGSIRFFLVYISAGIFGFVMGSNYAAPG-IASTGASGSLFGVIALTLLDLLYSWGERRNPT 369
                 789******************************************************999999997.69****************************** PP

                 HC...CCCCCCCCCCHHHCTSSSTTTHHHHHHHHHHHHHHHHHHCCH CS
    Rhomboid 102 iallllllfillnlvlgllpraggvsnlAHlgGllaGlllgllllrr 148
                  +l+++ll +++++vlgllp+    +n+ H+gG+l+Gl+lg+++l++
  CCE28623.1 370 KDLMFILLDMIISFVLGLLPGL---DNFSHIGGFLMGLALGVCILHS 413
                 ********************97...****************999876 PP

>> SirB  Invasion gene expression up-regulator, SirB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.4e-05       0.3      33     114 ..     273     353 ..     264     356 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.4e-05
        SirB  33 lqkkllkilphivdtlLllsgiaLlvllglspftkaWltaKlvllvvyivlgvvalkrakskklrllafvlAlvvflyivsl 114
                  ++ +  ilp  +   L+  g  Ll++l l   ++  ++  + +++vyi++g++ +  + + ++  +a  +A + ++ +++l
  CCE28623.1 273 PNQWFRFILPMFMHAGLIHIGFNLLLQLTLAKEME-QVIGSIRFFLVYISAGIFGFVMGSNYAAPGIASTGASGSLFGVIAL 353
                 444444589*******************9999975.79******************99999999999999998888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3597.45
//
Query:       CCE28624.1  [L=360]
Description: uncharacterized protein CPUR_02311 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2691.04
//
Query:       CCE28625.1  [L=465]
Description: GDH NADP-specific glutamate dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-84  281.7   3.7    6.9e-84  281.4   3.7    1.1  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
    7.4e-51  171.4   0.0    1.6e-50  170.3   0.0    1.6  1  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 
      0.005   17.3   0.2      0.011   16.1   0.2    1.5  1  NAD_binding_7    Putative NAD(P)-binding
  ------ inclusion threshold ------
       0.05   14.3   0.2        1.2    9.8   0.0    2.4  2  D-ser_dehydrat   Putative serine dehydratase domain


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.4   3.7   1.5e-87   6.9e-84       1     243 []     201     461 ..     201     461 .. 0.96

  Alignments for each domain:
  == domain 1  score: 281.4 bits;  conditional E-value: 1.5e-87
                    T--TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE......-HHHHHHHHHCSSSST CS
  ELFV_dehydrog   1 GGsldrpeaTglGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelgakvvavsDssGviydpeGl......dieellelkeerksvk 90 
                    GGsl+rpeaTg+Gv+yyv++ml++++  +++gk+vaisGsGnv++yaal+++elga+vv++sDs+G+++ + G       +i+++++lk +r+s++
     CCE28625.1 201 GGSLIRPEATGYGVIYYVQHMLEYAGRGTFAGKKVAISGSGNVAQYAALKCIELGATVVSLSDSKGALVAT-GSdtftadHIDKVAQLKVQRRSLS 295
                    9***********************9999****************************************964.333569999*************** PP

                    THSHHSTSTSEEESHHSHHHHS..S-SEEEE-SSTTSB-HHHHTHTHHTT-SEEE-SSSS-B-HHHHHHHHHTT.......-EEE-HHHHTTHHHH CS
  ELFV_dehydrog  91 eykkssekkaeyieneeellel..kvdilvPcAtqneideenakalikngvklvvEgANlpttqeAkeileeag.......vlvvpdkaaNaGGVt 177
                    +++  ++++++yie++ +++ +  kvd+++PcAtqne+++e+a+al+ +gv +v+Eg+N+++tqeA++++e+++       ++++p+kaaN+GGV+
     CCE28625.1 296 DFD--HAGRYKYIEGA-RPWVHvgKVDVALPCATQNEVSKEEAEALVSAGVLAVAEGSNMGCTQEAIDLFEAQRkkkggeaIWYAPGKAANCGGVA 388
                    ***..67789*****6.***8789************************************************9999******************** PP

                    HHHHHHHHHHCT----HHHHHHHHHHHHHHHHHHHHHHHHHCT-T.......HHHHHHHHHHHHHHHHHHHCT CS
  ELFV_dehydrog 178 vSslEmlqnlarlswteeevdeklkkimkeifkavveeaeeykqe.......lvkganiagfekvaeamkaqG 243
                    vS+lEm+qn++rl+wt+eevdekl+ im+e+fk+ +e+a++y +        lv+g+niagf kvaeam++qG
     CCE28625.1 389 VSGLEMAQNSQRLTWTSEEVDEKLRGIMEEAFKNGLETAKKYVEAkdgelpsLVAGSNIAGFVKVAEAMRDQG 461
                    *****************************************999999************************99 PP

>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.3   0.0   3.6e-54   1.6e-50       1     129 [.      56     183 ..      56     184 .. 0.99

  Alignments for each domain:
  == domain 1  score: 170.3 bits;  conditional E-value: 3.6e-54
                      -SEEEEEEEEEE-TTSBEEEEEEEEEEEE-TTSSEEEEEEEETT--HHHHHHHHHHHHHHHHHTTSS-EEEEEEEES-GGGS-HHHHHHHHHHH CS
  ELFV_dehydrog_N   1 pervlqvtvpvkrdnGelevikgyraqhssalgPakGGiRfhpsvnldevkaLaalmtyKnalvdlpfGGakggvkidpkklseeeleritrrf 94 
                      per++q++v +++d+G l+v++gyr+q++salgP+kGG+Rfhpsvnl+ +k+L++++++Knal++l++GG+kgg ++dpk++s+ e++r++++f
       CCE28625.1  56 PERIIQFRVVWEDDKGALQVNRGYRVQFNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLNMGGGKGGADFDPKGKSDGEIRRFCQAF 149
                      89******************************************************************************************** PP

                      HHHHG.GG-BTTTEEEEBBTTB-HHHHHHHHHHHH CS
  ELFV_dehydrog_N  95 vrelakkfiGpgiDvpApDvgtgaremawladeyk 129
                      +rel+ k+iG ++DvpA D+g++ re++++++ y+
       CCE28625.1 150 MRELS-KHIGADTDVPAGDIGVSGREIGYMYGAYR 183
                      *****.**************************996 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   2.5e-06     0.011       5      88 ..     230     344 ..     229     355 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.5e-06
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapev...keele..............elvklaeeelekd.................legadlvi 66 
                    + gkkv + G G+vA+  + k +e ga+v+ ++                          ++k++++ l++                  + ++d+++
     CCE28625.1 230 FAGKKVAISGSGNVAQYAALKCIELGATVVSLSDSKgalV---AtgsdtftadhidkvAQLKVQRRSLSDFdhagrykyiegarpwvhVGKVDVAL 322
                    679*************************999999864440...24444455555555544445555543224556666666667777788899999 PP

  NAD_binding_7  67 aatddrelneriaeaakarril 88 
                     + +++e++++ aea  ++++l
     CCE28625.1 323 PCATQNEVSKEEAEALVSAGVL 344
                    9999999999999888777776 PP

>> D-ser_dehydrat  Putative serine dehydratase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00028       1.2       5      39 ..     255     288 ..     252     318 .. 0.77
   2 ?    2.0   0.0     0.075   3.4e+02      10      30 ..     331     355 ..     325     421 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00028
                     EEEEEEEETTTTEEES--HHHH-S-SS--BT-EEE CS
  D-ser_dehydrat   5 latVvSrptarralvdaGskalsldssgpgfgkvv 39 
                      atVvS  ++++alv  Gs +++ d ++ ++++++
      CCE28625.1 255 GATVVSLSDSKGALVATGSDTFTAD-HIDKVAQLK 288
                     59***********************.444444443 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.075
                     EEETTTTEEES--HHHH-S-.....S CS
  D-ser_dehydrat  10 SrptarralvdaGskalsld.....s 30 
                     S+ +a +alv aG++a++       +
      CCE28625.1 331 SKEEA-EALVSAGVLAVAEGsnmgcT 355
                     44444.49********9988444330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3375.60
//
Query:       CCE28626.1  [L=360]
Description: probable alcohol dehydrogenase (NADP+) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-24   84.3   3.5    9.3e-24   83.4   3.5    1.5  1  ADH_N         Alcohol dehydrogenase GroES-like domain
      6e-17   61.8   0.0      1e-16   61.1   0.0    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
    0.00091   20.3   0.0     0.0014   19.6   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.022   14.1   0.0      0.035   13.4   0.0    1.3  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain
      0.037   13.4   0.0      0.057   12.8   0.0    1.2  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   3.5   2.6e-27   9.3e-24       2     108 ..      34     147 ..      33     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 2.6e-27
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-.......TTBEETTTSS- CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlC.......eeakllgvsld 92 
                 +++ ++++a+++C sDlh+++g  +     pl +GHE+vG+  +vg++vk+lkvGdrV v +++  c eC+ Ck+++en+C       +++ + g + +
  CCE28626.1  34 HDIDVEIAACSLCSSDLHTVTG-GWGDFDGPLCVGHEVVGKAIKVGQHVKNLKVGDRVGVGAQVWaCLECDLCKDKNENYCpkqvatyNSQYTDGSQAH 131
                 7899******************.6***********************************9877666***************665555444444455599 PP

                 SSSBSEEEECGGGEEE CS
       ADH_N  93 Ggfaeyvvvpekklvk 108
                 Ggfa+++ ++e + +k
  CCE28626.1 132 GGFASHIRAHEYFTFK 147
                 ******9999877665 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   2.8e-20     1e-16       1     129 [.     189     314 ..     189     315 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 2.8e-20
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHH..HHHHCEEEEEEEEECSCTSSEEE. CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatle..aalkllkpgGrlvvvGggkgeee. 96 
                 g+G++++q+ kalGae++a ++s++k e a klGa+evi ++e    + ++e + + ++d+v++c+ + + ++  ++l++lkpg  + +vG++ ++ + 
  CCE28626.1 189 GLGHLGLQWGKALGAETYALSHSPDKKEDALKLGAKEVILTTE----DNWAEPW-KAKFDFVLNCADATHKFDmsQYLSILKPGSDFHMVGIPDHPLPe 282
                 89***************************************44....5666666.5578******996665541178******************9999 PP

                 EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  97 fdlrnlllkeksilGsllgslreefkealdlla 129
                 ++++ ++    +++Gs+lg+ ++e++++l+l+a
  CCE28626.1 283 LSAGLFAGGAPKLTGSHLGN-HQEMEAMLKLAA 314
                 9999999*************.9******99976 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     4e-07    0.0014       1     112 [.     221     327 ..     221     345 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4e-07
                   TT-SEEEETTSTTHHHHH-TT-EEEEEES-H...HHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyrtedfeaatggegvDvvldtvg...gealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileela 94 
                   lGA+evi  +++++++   ++++D vl++++   + ++ ++ l++l++g ++ ++g p    + + p++ ++  +  +  l+  + + +++++e+++
    CCE28626.1 221 LGAKEVILTTEDNWAEP-WKAKFDFVLNCADathKFDM-SQYLSILKPGSDFHMVGIP----DHPLPELSAGLFAGGAPKLTGSHLG-NHQEMEAML 310
                   8******9999999844.4788*********9866666.8999999887899777744....2333333344444444444444445.566699999 PP

                   HHHHHHH----EEEEEEG CS
  ADH_zinc_N_2  95 alieeGklrpvvdrvfpl 112
                   +l +++ + p ++ v+++
    CCE28626.1 311 KLAADKGVAPWIE-VMQI 327
                   9999999988886.5544 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.7e-06     0.035      25      87 ..     175     236 ..     163     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.7e-06
                  CB---.EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHH CS
  AlaDh_PNT_C  25 gvepa.kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellae 87 
                  gv p+ kv v+G G  G   ++  k+lga++++l  +p+++e   +lgak  ev+  +e++ ae
   CCE28626.1 175 GVGPGkKVAVVGIGGLGHLGLQWGKALGAETYALSHSPDKKEDALKLGAK--EVILTTEDNWAE 236
                  344442799****************************************9..666666666555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.6e-05     0.057      36      81 ..     179     224 ..     172     253 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCE CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgve 81 
                   gk+v+++G+G +G+   +  ka+g++ +a ++s++k+e++ +lg++
    CCE28626.1 179 GKKVAVVGIGGLGHLGLQWGKALGAETYALSHSPDKKEDALKLGAK 224
                   89*******************************9988877666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2733.66
//
Query:       CCE28627.1  [L=630]
Description: uncharacterized protein CPUR_02315 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        0.3    9.6   7.4       0.46    9.0   7.4    1.1  1  Ufd2P_core    Ubiquitin elongating factor core
       0.34   10.4   9.9       0.48    9.9   9.9    1.3  1  Exonuc_VII_L  Exonuclease VII, large subunit
        3.6    7.1  10.7        7.3    6.1  10.3    1.7  2  DUF775        Protein of unknown function (DUF775)
        9.2    7.0   7.5         26    5.6   7.5    1.7  1  DUF2203       Uncharacterized conserved protein (DUF2203)


Domain annotation for each model (and alignments):
>> Ufd2P_core  Ubiquitin elongating factor core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   7.4    0.0001      0.46     176     234 ..      65     123 ..      48     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0001
                 HHHHHTHHHHHHHHH.THHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ufd2P_core 176 kalhlglkpaisefk.rllqelkrlqdeleeleaeaaqleeqlkklkkelekllseklal 234
                 + ++l+++++i++++ + +q+++++q++ eel++e++q ++q  ++ +++ + ++ kl++
  CCE28627.1  65 QTIQLMILQTIQQIQqQSQQAMQQMQQKQEELQQESRQRSQQQTRMMQQMME-QMTKLTV 123
                 5689999999999998888999999999999999966666666666555553.4555554 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   9.9   0.00011      0.48     124     207 ..      47     132 ..      45     264 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00011
  Exonuc_VII_L 124 AdlrapTPtaaAelvvpdk...aeleeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkq.l 207
                   + +r  TPt+    + p +     +++++++++++ ++a++++ +++++  ++ ++r +++++++++  +++++l   +++++ +  +
    CCE28627.1  47 SAIRHTTPTNPVTEAEPAQtiqLMILQTIQQIQQQSQQAMQQMQQKQEELQQESRQRSQQQTRMMQQMMEQMTKL--TVKQSMPQVpA 132
                   567899999987777766411145588888888888888877666555444455556667777777777776664..33333333321 PP

>> DUF775  Protein of unknown function (DUF775)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  10.3    0.0016       7.3      72     157 ..      22     119 ..      12     140 .. 0.68
   2 ?   -3.6   0.0       1.5   6.7e+03     148     169 ..     599     620 ..     586     627 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0016
      DUF775  72 neKpSAifkvknekss............seaesaseassaeesstltiGisiEpleqvaaqlaelkaeqsassssaassskse.essaavtkelaqkii 157
                 ++K SA  +v    ++             +++ ++ +++ae+++t+++ i ++ ++q+++q +++ ++ ++++++ +++s+++ ++++++++++ +++ 
  CCE28627.1  22 PSKHSATTHVDTRYATeeklptvptsaiRHTTPTNPVTEAEPAQTIQLMI-LQTIQQIQQQSQQAMQQMQQKQEELQQESRQRsQQQTRMMQQMMEQMT 119
                 67889999998888778889999998875455666667788888888866.566666666666666555555544444333330333334566655554 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.5
      DUF775 148 vtkelaqkiiknafnylaSFad 169
                  t+ +a  i++ + n++  F+ 
  CCE28627.1 599 LTTIVAFMIMTPVINFVRDFVV 620
                 3788899999999999999876 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.5    0.0058        26      11      59 ..      71     119 ..      63     129 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0058
     DUF2203  11 lLpllkelleelralrkeleeleeeleeakaeaekseaaeleaeleele 59 
                 +L++++++ ++ +++ +++++++eel+++++++++++ + +++ +e+++
  CCE28627.1  71 ILQTIQQIQQQSQQAMQQMQQKQEELQQESRQRSQQQTRMMQQMMEQMT 119
                 5777888888888888888888888888888776655444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4404  (0.245636); expected 358.6 (0.02)
Passed bias filter:                     1596  (0.0890178); expected 358.6 (0.02)
Passed Vit filter:                       300  (0.0167327); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.10u 0.34s 00:00:01.44 Elapsed: 00:00:00.45
# Mc/sec: 4163.32
//
Query:       CCE28628.1  [L=359]
Description: related to alcohol/sorbitol dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-29  101.3   1.1    4.3e-29  100.6   1.1    1.4  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    1.4e-26   93.0   0.5    2.4e-26   92.3   0.5    1.4  1  ADH_zinc_N       Zinc-binding dehydrogenase
    9.4e-07   29.9   0.1    1.4e-06   29.3   0.1    1.3  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
    1.6e-06   27.8   0.4    2.2e-06   27.3   0.4    1.2  1  Glu_dehyd_C      Glucose dehydrogenase C-terminus
    9.8e-05   22.4   0.0    0.00016   21.7   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
     0.0036   16.6   0.1     0.0049   16.2   0.1    1.2  1  FAD_binding_3    FAD binding domain
  ------ inclusion threshold ------
      0.026   13.9   0.0      0.076   12.4   0.0    1.7  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.038   13.2   0.1      0.062   12.5   0.1    1.4  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      0.048   13.9   0.1      0.086   13.1   0.1    1.4  1  TrkA_N           TrkA-N domain
      0.058   12.7   0.3      0.097   12.0   0.3    1.3  1  ThiF             ThiF family
      0.072   13.3   0.1       0.12   12.7   0.1    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.073   12.5   0.1       0.15   11.5   0.1    1.5  1  adh_short        short chain dehydrogenase
       0.14   12.8   0.0       0.41   11.3   0.0    1.8  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
       0.21   11.0   0.0       0.35   10.2   0.0    1.3  1  Lyase_1          Lyase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   1.1   3.4e-32   4.3e-29       2     106 ..      25     141 ..      24     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 3.4e-32
                 TEEEEEEEEEEE-HHHHHHHTTS...........TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTT CS
       ADH_N   2 gevlikvkaagiCgsDlhilkgg...........kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgv 89 
                 g+v i  k +giCgsDlh + gg             ++ +lp++lGHE++G+v+evg++v+++k GdrV+v+p+i +g+C++C +g  n+C++++++g+
  CCE28628.1  25 GKVKIAPKFCGICGSDLHEYLGGanliptpshphPITKEALPITLGHEFSGIVQEVGEGVESIKPGDRVCVQPIIYDGDCRSCVRGLVNCCDSNGFVGL 123
                 7899**************************99987888999********************************************************** PP

                 S.S-SSSBSEEEECGGGE CS
       ADH_N  90 s.ldGgfaeyvvvpekkl 106
                 s + Gg++e +vvpe+ +
  CCE28628.1 124 SgWGGGLSETMVVPESCV 141
                 *9************9865 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.5   1.8e-29   2.4e-26       1     129 [.     184     312 ..     184     313 .. 0.96

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 1.8e-29
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEET.TTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadeviny.keadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeef 97 
                 ++Gla++q++ a G+ ++i+  +s +++e+a ++Ga+++i++ +e ++v+r++eltg +g+dv f+c+G++a+l++a+++lk +G+lv +++ ++   +
  CCE28628.1 184 PIGLAVCQVLVARGCtNIIVCEVSTRRREFATEFGAHHTIDPiHE-NMVARVAELTGNRGADVGFDCAGAQAALDTAFESLKARGTLVNIAVWENRAAL 281
                 79****************************************555.9************************************************9*9* PP

                 EHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  98 dlrnlllkeksilGsllgslreefkealdlla 129
                  ++ l+++e++ +G+  +s   +f+++ld +a
  CCE28628.1 282 AMNGLVFRERNYMGVATYS-LGDFEAVLDAIA 312
                 *******************.79**99998876 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   1.1e-09   1.4e-06       2     115 ..     218     331 ..     217     338 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.1e-09
                   T-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHH CS
  ADH_zinc_N_2   2 GAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileela 94 
                   GA++ id   e+++    + tg++g Dv +d++g +a+l+ +++ l+ +G+lv i+    +   ++ a+  +g  ++   ++ + ++   d +e+++
    CCE28628.1 218 GAHHTIDPIHENMVarvaELTGNRGADVGFDCAGAQAALDTAFESLKARGTLVNIAV---W--ENRAALAMNGLVFRERNYMGVATYSLGD-FEAVL 308
                   9*****87766666677799999***********88888*******777****9994...2..4555555678888888888888885677.***** PP

                   HHHHHHH----..EEEEEEGGGH CS
  ADH_zinc_N_2  95 alieeGklrpv..vdrvfpleea 115
                   + i+ Gk +p   ++++ +l+++
    CCE28628.1 309 DAIATGKMKPAgmITKTIQLDRV 331
                   *********85337777777776 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.4   1.7e-09   2.2e-06       4     211 ..     153     352 ..     150     353 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.7e-09
  Glu_dehyd_C   4 gvLvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvds..retpvdeipea.. 97 
                  g LvEP+++   a+e          ++ +s+l+lGaG++GL    +l a  rg +++ v +   r   + ++  e Ga       +e+ v +++e   
   CCE28628.1 153 GALVEPLAVGWHAVEISPY------MKTDSVLILGAGPIGLAVCQVLVA--RGCTNIIVCEVSTR---RREFATEFGAHHTIDpiHENMVARVAELtg 239
                  7899999998888887654......56789***********99999986..89998888775444...567889999976432125566777766511 PP

  Glu_dehyd_C  98 seemdlvvEaTGsakhafeaiealapnGvaaLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdldel 195
                  ++  d+ +++ G+ +++  a e l++ G  + + v e++++        + lv + +  +G    +   fea +d++a+ + +  + ++tk ++ld++
   CCE28628.1 240 NRGADVGFDCAGAQAALDTAFESLKARGTLVNIAVWENRAALA-----MNGLVFRERNYMGVATYSLGDFEAVLDAIATGKMK-PAGMITKTIQLDRV 331
                  5679*********999999*********999999988874444.....44456666788999999*******99999887655.67889999998875 PP

  Glu_dehyd_C 196 .eeAfe....dddetiKtvve 211
                   ++ f+    d+++++K  v+
   CCE28628.1 332 vDDGFHalinDKENQVKILVD 352
                  244554444488889998886 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.3e-07   0.00016       6      65 ..     168     225 ..     164     259 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.3e-07
                   HHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEE CS
  Shikimate_DH   6 kleslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealk 65 
                   + + +k+  vl++GaG ++  v++ L+a+g+++++v   +  r +e+a+e++++  ++ +
    CCE28628.1 168 ISPYMKTDSVLILGAGPIGLAVCQVLVARGCTNIIVCEVST-RRREFATEFGAH-HTIDP 225
                   56678999**************************9998776.557899999776.34444 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   3.8e-06    0.0049       3      39 ..     176     212 ..     174     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.8e-06
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvl 39 
                    +VlI GaGp Gl   ++L  +G  +++v   st+ ++
     CCE28628.1 176 SVLILGAGPIGLAVCQVLVARGCTNIIVCEVSTRRRE 212
                    69*************************9887777665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     6e-05     0.076      34      77 ..     172     216 ..     160     230 .. 0.79
   2 ?   -3.4   0.0         4   5.2e+03     113     127 ..     259     273 ..     257     273 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6e-05
                   GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHH CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeee 77 
                   ++   v i+G+G IG av ++l a g+ ++i+ ++s +++e + e
    CCE28628.1 172 MKTDSVLILGAGPIGLAVCQVLVARGCtNIIVCEVSTRRREFATE 216
                   677889*********************889999999887763444 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4
                   HHHCSTTTEEEEESS CS
  2-Hacid_dh_C 113 elakmkkgailiNta 127
                   +++++k    l+N+a
    CCE28628.1 259 AFESLKARGTLVNIA 273
                   688999999999987 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.8e-05     0.062     138     186 ..     170     218 ..     151     297 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.8e-05
                  CSS-TSEEEEES-SHHHHHHHHHHHHHT-E.EEEEESSSSSSTTS-HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 138 lkllpkrivvvGgGyiGvElAaalaklgke.vtlveardrllraldkels 186
                    ++ +++++ G+G+iG+ ++++l   g+  + + e  +r  r++  e++
   CCE28628.1 170 PYMKTDSVLILGAGPIGLAVCQVLVARGCTnIIVCEVSTRR-REFATEFG 218
                  4445589******************9999745555555544.44444443 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   6.7e-05     0.086       1      43 [.     177     220 ..     177     236 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.7e-05
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSE CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreegle 43 
                 ++i+G+G +G ++++ L + g+ +++v + + +r e ++e g++
  CCE28628.1 177 VLILGAGPIGLAVCQVLVArGCTNIIVCEVSTRRREFATEFGAH 220
                 68*****************77788******99998888877755 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   7.6e-05     0.097      17      47 ..     173     203 ..     160     206 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.6e-05
                 HTSEEEEE--SHHHHHHHHHHHHHTTTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  17 rdskvllvGaGglGsellknLalsGvgkltl 47 
                 ++ +vl++GaG +G  +++ L++ G+ ++ +
  CCE28628.1 173 KTDSVLILGAGPIGLAVCQVLVARGCTNIIV 203
                 5678************************987 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     9e-05      0.12       1      84 [.     177     257 ..     177     292 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9e-05
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS..SEEEE-SSGGGHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg..dlvvnlsppissld 84 
                      vli+GaG +G av ++l++++    +i+v++ s ++  +++a++ g  +++  +  + ++  +a+l   +  d+  ++++   +ld
       CCE28628.1 177 VLILGAGPIGLAVCQVLVARGCT--NIIVCEVSTRR--REFATEFGAHHTIDPIHENMVAR-VAELTGNRgaDVGFDCAGAQAALD 257
                      89*******************99..9*****99999..77777777777777777777666.666654444566666666665555 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00011      0.15       3      47 ..     177     220 ..     175     240 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee 47 
                 vl+ Ga+  IG+a+++ l+++G++ ++v + + + +e a+e++++
  CCE28628.1 177 VLILGAG-PIGLAVCQVLVARGCTNIIVCEVSTRRREFATEFGAH 220
                 7899988.8***************999666667777999999875 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00032      0.41       3      49 ..     178     220 ..     176     238 .. 0.65
   2 ?   -2.2   0.0         5   6.4e+03      81      97 .]     340     356 ..     334     356 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
                    EEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-E CS
  F420_oxidored   3 giiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvk 49 
                     i+GaG +g a+ + l+a+g   ++i+v  +    +++e+a e+g+ 
     CCE28628.1 178 LILGAGPIGLAVCQVLVARG--CTNIIVC-EV-STRRREFATEFGAH 220
                    599*****************..6666633.32.33344555555532 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5
                    CGHHHHTTSEEEEESSS CS
  F420_oxidored  81 lakdalkgklvisvlag 97 
                    + +++ + k++++v ag
     CCE28628.1 340 INDKENQVKILVDVGAG 356
                    456788999****9986 PP

>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00027      0.35     160     188 ..      61      89 ..      51      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00027
                 TEEEEEEEHHHHHHHHHHHHHHHHHHHHH CS
     Lyase_1 160 lqdAtPvtlgqelsayaealerdrerlke 188
                 +++A P+tlg+e+s+ ++++ +  e +k 
  CCE28628.1  61 TKEALPITLGHEFSGIVQEVGEGVESIKP 89 
                 578*****************999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2632.64
//
Query:       CCE28629.1  [L=1237]
Description: related to sensory transduction histidine kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-22   78.7   0.1    8.5e-22   77.8   0.1    1.5  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    1.5e-20   73.5   0.2    3.1e-20   72.4   0.2    1.6  1  Response_reg  Response regulator receiver domain
      7e-07   29.2   0.1    1.8e-06   27.9   0.1    1.8  1  HisKA         His Kinase A (phospho-acceptor) domain
    2.8e-05   24.3   0.0     0.0086   16.3   0.0    3.4  3  PAS_4         PAS fold
     0.0033   17.4   0.0       0.31   11.1   0.0    3.0  3  PAS_8         PAS domain
     0.0042   17.4   0.0       0.14   12.4   0.0    2.7  2  GAF_2         GAF domain
     0.0084   16.1   0.0       0.11   12.5   0.0    2.9  4  PAS           PAS fold
  ------ inclusion threshold ------
      0.035   14.4   0.0       0.14   12.4   0.0    2.0  1  PAS_3         PAS fold
      0.038   13.8   0.0       0.11   12.4   0.0    1.8  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.1   4.3e-25   8.5e-22       2     109 ..     875    1023 ..     874    1026 .. 0.84

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 4.3e-25
                  HHHHHHHHHHHHHHHHHHHHS..TTTEEEEEEEE............................EE..........TEEEEEEEESSSSSTTHHHTGTC CS
   HATPase_c    2 dekrLrqiisnlvdNavkfat..kageieveika............................se..........ddlvisveDnGiGipkedlkklf 58  
                  d++rL+q+++n+++N++kf++  k+ +i+v+++a                            +             l+++++D+G Gi+ edlk+lf
  CCE28629.1  875 DPSRLQQVLINFITNSIKFTQnqKTRNITVTMNAftdlskllqgdiaylecsefsqsllqqrHHssgeqnteppILLQFTIQDSGSGINDEDLKLLF 971 
                  789****************444488899998888888887777777776666665555544400445566778899********************* PP

                  STTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEE CS
   HATPase_c   59 ekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftftlp 109 
                   +f+q    t +++gg+GlGl i++ lve+ gG+i v s++++G++f+f+++
  CCE28629.1  972 RRFQQaTPRTHVQYGGSGLGLFISRTLVEMQGGQIGVLSQENEGSSFYFYVK 1023
                  ******999********************7779****************987 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.2   1.6e-23   3.1e-20       1     111 [.    1092    1218 ..    1092    1219 .. 0.94

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 1.6e-23
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH...........ESEEEEESSCSSSEHHHHHHHHHHCT......TTSEEEEEE CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek...........vdlillDinmpgmdGlellkeireed......pelpviilt 78  
                    +liv+D+ +++++l+++l ++g  ++ +a++g+eal+ll +++           + +il+D++mp mdGl+ +k+ire +      +++p+i++t
    CCE28629.1 1092 ILIVEDNLINQKVLNRQLVNKGN-KTYTANHGQEALDLLAKSRfwkgraadgfdISVILMDLEMPVMDGLTCTKKIRELEregtivKHIPIIAVT 1185
                    8*********************9.***************88888888888998899*********************99988888888******* PP

                    SSTSHHHHHHHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg   79 ahseeedavealkagaddflsKpfdpeeLlkal 111 
                    a++  e++++a +ag+d+++ Kpf++++Ll ++
    CCE28629.1 1186 AYARPEQVQKAQDAGMDEVMPKPFRMTDLLPKI 1218
                    ****************************98776 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   9.2e-10   1.8e-06       2      66 ..     745     822 ..     744     823 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 9.2e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC...........T-HSSCHH.......HHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre.........gklteelke.......yletiesearrldhlvedlLdlsriea 66 
                 ++ f+   +HE+r+PLsail  ++ +  +             +++k+       + +ti  +a +  ++v+d+L+ls++++
  CCE28629.1 745 QENFIDITSHEMRNPLSAILQCVDQITSSvvefsdyglL---DSVKRlhadcldAANTISLCASHQKRIVDDILTLSKLDS 822
                 56789999******************9989999996440...4444413344447777777777***************97 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.4   2.7e+03      11      25 ..      69      83 ..      67      89 .. 0.83
   2 !   16.3   0.0   4.3e-06    0.0086      17     107 ..     271     365 ..     265     367 .. 0.80
   3 ?    3.5   0.0      0.04        80       5      74 ..     611     684 ..     608     726 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.4
       PAS_4 11 ldpdgrvlyaNaaaa 25
                ++ d+ ++y+N++ +
  CCE28629.1 69 VSGDLEIVYCNPSLR 83
                678*********966 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 4.3e-06
       PAS_4  17 vlyaNaaaaelfgappeellGktlaellpee...daarleralrrvlegeepiefleelll.pgeerhyelrllPlrdesGevigvlvisrDiTe 107
                 ++ +N+++ el+g     l+G++++e ++e     ++ l ra+++  ++ ++ ++l ++++   ee +++++++Pl+ ++ +v+g++  + + T+
  CCE28629.1 271 ITMYNKSYVELAGKKHPKLTGQPYQEGWSEIwddIKPILLRAWNEGESTMKREDRLFITRHgFLEETFFSWSMVPLLGSKNQVMGLFNAAFENTQ 365
                 5679*********************999984444666666666666666666666666666889**********************998877665 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.04
       PAS_4   5 pdalavldpdgrvlyaNaaaaelfgappeellGktlaellpee....daarleralrrvlegeepiefleelll 74 
                 p+++++ d +g + y+N  + ++ +  + e  G t    + +     d++ l++a+++++ ++ + + +   ++
  CCE28629.1 611 PVGIFIADFEGSFSYCNDMWWQISRQNRVEDFGNTTKHAWIHNvmdaDRPKLQAAWDKMIVEKSTMSIEFRFKC 684
                 999***************96665555555555655554444433444***********9999988887776666 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.1   8.2e+03      22      29 ..      74      81 ..      62      82 .. 0.78
   2 ?    2.6   0.0     0.075   1.5e+02      23      56 ..     271     309 ..     255     319 .. 0.79
   3 !   11.1   0.0   0.00015      0.31       2      41 ..     602     642 ..     601     668 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.1
       PAS_8 22 rivdvNqa 29
                 iv++N++
  CCE28629.1 74 EIVYCNPS 81
                6*****96 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.075
       PAS_8  23 ivdvNqaalellGys.adlkgellg....qllpvlrpll 56 
                 i+++N+++ el G + + l g++ +    +++++++p l
  CCE28629.1 271 ITMYNKSYVELAGKKhPKLTGQPYQegwsEIWDDIKPIL 309
                 9************88999999999755667777666655 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00015
       PAS_8   2 rlralfesspdgiavvd.lgdrivdvNqaalellGys.adlk 41 
                 ++  l e +p+gi+++d +g  + ++N+ + ++   +  ++ 
  CCE28629.1 602 KFSRLAEFAPVGIFIADfEGS-FSYCNDMWWQISRQNrVEDF 642
                 6889999**************.********999874443344 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   7.3e-05      0.14      85     136 ..     333     386 ..     277     386 .. 0.75
   2 ?    1.7   0.0      0.14   2.8e+02     106     137 ..     527     558 ..     479     559 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.3e-05
                 HHHHTT--EEEEEE-T.TS---EEEEES.......--HHHHHHHHHHHHHHHHH CS
       GAF_2  85 aghaglrsflavPlis.egrvvGvlnlyankppa.fdeedlelLeelaeqiaia 136
                   ++ + s+  vPl++ +++v+G +n ++++ ++  +e+ l+ L+e++e+i+ a
  CCE28629.1 333 FLEETFFSWSMVPLLGsKNQVMGLFNAAFENTQQiVNERRLHTLREVGEHISAA 386
                 55555556689*****99********9766666657***************987 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.14
                 EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2 106 GvlnlyankppafdeedlelLeelaeqiaiai 137
                 G+++l+ n ++++de+   +++++++q+a+ +
  CCE28629.1 527 GFVVLGVNPRRPYDEDYKLFVNLMMRQLATSL 558
                 778887789999****************9865 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.3   1.1e+04      19      30 ..      71      82 ..      69      84 .. 0.80
   2 ?   -1.7   0.0       1.4   2.9e+03      23      53 ..     271     301 ..     269     331 .. 0.79
   3 !   12.5   0.0   5.5e-05      0.11       3      56 ..     603     656 ..     601     689 .. 0.85
   4 ?   -3.8   0.0       6.1   1.2e+04      78      98 ..     885     911 ..     873     915 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.3
                TTSBEEEECHHH CS
         PAS 19 edgrilyvNaaa 30
                 d +i+y+N++ 
  CCE28629.1 71 GDLEIVYCNPSL 82
                6889*****986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
                 EEEECHHHHHHHSSTHHHCTTSBGGGGBSTT CS
         PAS  23 ilyvNaaaeellGlsreevlgkslldlihee 53 
                 i+  N+++ el G +   + g+++ + ++e 
  CCE28629.1 271 ITMYNKSYVELAGKKHPKLTGQPYQEGWSEI 301
                 78899*********99999999998877765 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 5.5e-05
                 HHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH CS
         PAS   3 lraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheedda 56 
                 ++++ e +p++if+ D  g ++y+N+ + ++   +r e  g +  + ++++ ++
  CCE28629.1 603 FSRLAEFAPVGIFIADFEGSFSYCNDMWWQISRQNRVEDFGNTTKHAWIHNVMD 656
                 7788899************************************99999998554 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 6.1
                 EEEC......TTSSEEEEEEEEEEEEE CS
         PAS  78 sfkl......rdgrpihlevraspvrd 98 
                 +f +      ++++++ + v+++ ++d
  CCE28629.1 885 NFITnsikftQNQKTRNITVTMNAFTD 911
                 333366666789999999999998887 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.1e-05      0.14      16      61 ..     639     685 ..     636     693 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.1e-05
       PAS_3  16 peellgk.veswldlvhpeDrervrealqealkkgepyegeyRirrk 61 
                  e++ ++ ++ w+  v   Dr+++++a+++++ +++ +++e+R+++ 
  CCE28629.1 639 VEDFGNTtKHAWIHNVMDADRPKLQAAWDKMIVEKSTMSIEFRFKCS 685
                 5788888899**********************************986 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.4e-05      0.11      34      95 ..     951    1013 ..     877    1026 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.4e-05
  HATPase_c_3   34 geivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklA...slslgkkltvitkke 95  
                    +++i+D G+G++ e+lk  +r  ++++   r++ ++G  G+Gl+ +   + ++g ++ v + ++
   CCE28629.1  951 LQFTIQDSGSGINDEDLKLLFRRFQQATP--RTHVQYGGSGLGLFISrtlVEMQGGQIGVLSQEN 1013
                   689***************98875555544..48999*******9877222345666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.46
# Mc/sec: 8094.18
//
Query:       CCE28630.1  [L=351]
Description: uncharacterized protein CPUR_02318 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      132  (0.00736237); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2501.63
//
Query:       CCE28631.1  [L=175]
Description: uncharacterized protein CPUR_02319 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       168  (0.00937029); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1313.77
//
Query:       CCE28632.1  [L=414]
Description: probable spliceosome-associated protein SAP-49 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-32  111.4   0.0    7.5e-16   57.7   0.0    2.2  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
     0.0079   15.8   0.0       0.16   11.5   0.0    2.2  2  RRM_5     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
       0.03   14.0   1.6        1.8    8.3   0.3    2.5  2  OB_RNB    Ribonuclease B OB domain
      0.065   13.4   0.0       0.19   11.9   0.0    1.8  2  RRM_7     RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   1.7e-19   7.5e-16       1      70 []      15      85 ..      15      85 .. 0.98
   2 !   51.8   0.0   1.2e-17   5.5e-14       1      69 [.     104     173 ..     104     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 1.7e-19
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70
                +++gn+ + +t ++++e++ + Gpi +i ++rd  t++++gf+fVeF ++ dAe A + lng kl g+ l+
  CCE28632.1 15 VYIGNIDERATSSTIYEVMLQMGPIHNIHMPRDrVTQTHQGFGFVEFRTPADAEYAANVLNGIKLFGKSLR 85
                8****************************************************************999875 PP

  == domain 2  score: 51.8 bits;  conditional E-value: 1.2e-17
                 EEEESETTTSSHHHHHHHHHTTSCEEEE.EEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksi.klvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lf+gnL   v+e+ L++ Fs fGp  s+ k+ rd  g skgf+fV F + e+ ++A+++l+g+ + ++e+
  CCE28632.1 104 LFIGNLDAMVDEKLLYDTFSRFGPLLSLpKVARDDAGHSKGFGFVSFGDFESSDAAMANLDGQYMLSKEI 173
                 8************************887577788*****************************9999987 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   3.7e-05      0.16      39      97 ..      24      87 ..       5     106 .. 0.76
   2 ?    1.8   0.0     0.038   1.7e+02      64      98 ..     143     177 ..     140     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.7e-05
       RRM_5 39 vnldklFnlfclYgnverv.....kflktkketalvqmgdasaveravqHLnnaklfgkrleva 97
                 + + ++ ++ + g ++ +     ++ +t ++  +v+     ++e a + Ln++klfgk l+v 
  CCE28632.1 24 ATSSTIYEVMLQMGPIHNIhmprdRVTQTHQGFGFVEFRTPADAEYAANVLNGIKLFGKSLRVN 87
                5566666666666666666222224567899999*************************99985 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.038
       RRM_5  64 ketalvqmgdasaveravqHLnnaklfgkrleval 98 
                 k+  +v  gd  + + a+  L ++ +  k++ v+ 
  CCE28632.1 143 KGFGFVSFGDFESSDAAMANLDGQYMLSKEISVQY 177
                 6777899********************99988865 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0079        35       2      14 ..      48      60 ..      48      68 .. 0.86
   2 ?    8.3   0.3    0.0004       1.8       5      21 ..     140     157 ..     139     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0079
                EEEE-SSS-EEEE CS
      OB_RNB  2 tvrahkkGFGFli 14
                +v+ + +GFGF++
  CCE28632.1 48 RVTQTHQGFGFVE 60
                588899******8 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0004
                 E-SSS-EEEEECT..TEE CS
      OB_RNB   5 ahkkGFGFlipde.gkeD 21 
                 +h+kGFGF++  + +++D
  CCE28632.1 140 GHSKGFGFVSFGDfESSD 157
                 8********987766655 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.96   4.3e+03      15      35 ..      46      66 ..      15      78 .. 0.67
   2 ?   11.9   0.0   4.2e-05      0.19       4      59 ..     104     152 ..     101     175 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.96
       RRM_7 15 eeelkatfkefgkvlvdwPkk 35
                 + +++t + fg v    P  
  CCE28632.1 46 RDRVTQTHQGFGFVEFRTPAD 66
                345566666666655555555 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.2e-05
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfed 59 
                 +F+G l + ++e+ l++tf++fg++l   Pk a+ ++ ++      kg+ f+ f d
  CCE28632.1 104 LFIGNLDAMVDEKLLYDTFSRFGPLL-SLPKVARDDAGHS------KGFGFVSFGD 152
                 7***********************85.7999988866654......4666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3013.32
//
Query:       CCE28633.1  [L=76]
Description: uncharacterized protein CPUR_02321 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-21   73.7   0.0    8.7e-21   73.3   0.0    1.2  1  Tom7      TOM7 family


Domain annotation for each model (and alignments):
>> Tom7  TOM7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   4.9e-25   8.7e-21       1      39 [.       9      47 ..       9      48 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 4.9e-25
        Tom7  1 KeriskvidvsktaiHyGfiPlvlyLGfsksePkpslis 39
                Keri+k+idvs++a+HyG++Pl+lyLG+++seP+psli+
  CCE28633.1  9 KERIAKLIDVSRVALHYGYLPLILYLGYTRSEPRPSLIQ 47
                9************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 573.40
//
Query:       CCE28634.1  [L=320]
Description: probable FAD carrier protein FLX1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-60  199.2   2.4    3.3e-19   68.6   0.2    3.0  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   8.4e-22   1.5e-17       3      94 ..      10     103 ..       8     106 .. 0.90
   2 !   68.6   0.2   1.9e-23   3.3e-19       6      96 ..     112     200 ..     107     201 .. 0.93
   3 !   66.1   0.1   1.1e-22   1.9e-18       5      93 ..     229     315 ..     226     317 .. 0.91

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 8.4e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHH..HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGl..rglyrGllpnllrvapasalkfvlyetlkrlll 94 
                  +++ e +aG+ ag+v+tlv++Pld+vKtr+q+ ++ + +s    +l +l+++  +++   ++lyrGl+pnl+++a +sa+ f++   + +l+ 
  CCE28634.1  10 SPAFVEAVAGLSAGVVSTLVVHPLDIVKTRMQIYRSAGPSSPPPTTLAILRSLTSNKQPilLSLYRGLTPNLIGNATSSAAFFFFKSRFETLVA 103
                 578999*****************************99999888879*9****99888865599*********************9999888765 PP

  == domain 2  score: 68.6 bits;  conditional E-value: 1.9e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96 
                   +++a+glaga+++ +t+P++v+Ktr+ ++ + +  ++ + +l  +++i+++eG++g+yrGl+++ll+v+   a+ f++ye  kr+++k+
  CCE28634.1 112 GGYFVASGLAGATTSALTNPIWVLKTRMLSSDRGAVGAYPS-MLAGIRTILRTEGVAGFYRGLTVSLLGVS-HGAVHFAVYEPAKRMYFKR 200
                 6789**************************99998886655.****************************9.9**************9986 PP

  == domain 3  score: 66.1 bits;  conditional E-value: 1.1e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                  +++++++++a++va+ vt+P  v++ r+q+ +  ++    +++ dv+ +i++eeG+ g+yrGl+p ++rv+pa+ ++f++ye +k +l
  CCE28634.1 229 NQATVVISSVAKLVAGAVTYPYQVLRSRMQNYRADERFG--RGVGDVVARIWREEGFVGFYRGLVPGVVRVMPATWVTFLVYENVKYHL 315
                 5678999************************99987653..45*****************************************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2326.02
//
Query:       CCE28635.1  [L=55]
Description: uncharacterized protein CPUR_02323 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.41
# Mc/sec: 406.88
//
Query:       CCE28636.1  [L=142]
Description: uncharacterized protein CPUR_02324 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-12   45.9   0.0    6.5e-12   45.6   0.0    1.1  1  AA_kinase  Amino acid kinase family


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   3.6e-16   6.5e-12     131     224 ..       6     104 ..       3     119 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 3.6e-16
                 HHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTS.SEEEEEESSSSCESSTTTTCCTTCECCEEEHHHCHH....CSSS.TTTHHHHCHH CS
   AA_kinase 131 ieelleagvvpvltgfigldeegelgrgssDtiaallAealgA.dkliiltdVdGVydadpkkvpdarllpeisvdeaee....saselatgGmkvkhp 224
                 + ++l++g++p l  ++++d   + + +s D + ++lA  l+A  ++ii+t V G+y+++pk+ +da l++++++ + +      ++ +atg m +k +
  CCE28636.1   6 VGQILDQGFIPLLIDDVVFDLASGPYMLSDDALMRILAMSLDAvQRCIIVTGVAGIYTRNPKVFEDAMLFRQLRYISTDTdqeaCDEPDATGAMDSKWQ 104
                 5689********************99*****************************************99888888777777779899999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1030.68
//
Query:       CCE28637.1  [L=143]
Description: uncharacterized protein CPUR_02325 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-08   32.0   0.0    9.7e-08   31.9   0.0    1.1  1  AA_kinase  Amino acid kinase family


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   5.4e-12   9.7e-08     125     192 ..      51     119 ..       4     136 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 5.4e-12
                 EEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTS.SEEEEEESSSSCESSTTTT CS
   AA_kinase 125 svdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgA.dkliiltdVdGVydadpkk 192
                  + ++ + + l++  + v+ g  ++d+  + +++s+D +   lA  l+   ++i++tdV G+y+ dp+ 
  CCE28637.1  51 TQLISRVWKCLSRHLILVIVGETAFDVALGTTIVSGDALMHVLATGLETvQRCIFVTDVAGLYTQDPRS 119
                 333556666777777777777788************************98*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.78
# Mc/sec: 553.21
//
Query:       CCE28638.1  [L=328]
Description: uncharacterized protein CPUR_02326 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-31  107.4   0.0      1e-30  107.1   0.0    1.1  1  AA_kinase  Amino acid kinase family


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.0   5.8e-35     1e-30       2     222 ..       3     274 ..       2     294 .. 0.84

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 5.8e-35
                 EEEEEE-TTCCCCTCC.........HHHHHHHHH.HHHHHHHTTEEEEEE--HHHHHHHHHH............TCCCCCHHHC............... CS
   AA_kinase   2 rvVvKlGGssltdkee.........aslrrlaeq.iaalkesgnklvvVhGggsftdgllal............ksglssgelaa.............. 64 
                 ++VvKlGG+++tdk +           ++++a+  + +l+ +g+ +v++hG+gsf++  +++            +         +              
  CCE28638.1   3 TLVVKLGGAAITDKAKadtlsleldTLVDKVAKVyLTQLRPQGRAMVLIHGAGSFGHPPARRfqvkigwvsaavE---------Ehadkghdaaeyert 92 
                 68**********8888799998887777777775366778888*******************8886666555443.........244445556689999 PP

                 ...........E..HHHHHHHHHHHHHHHHHHHHHHHHHTT.HGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTE CS
   AA_kinase  65 ........glrstleeagevatrdalaslgerlvaallaag.lpavglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeege 154
                         ++r ++++ g ++tr+ +++l   ++++l++ + lp  ++s  ++  t +g+    + + + + +  +++ll++g++p l g++++d   +
  CCE28638.1  93 rplmeqkeKERQDEVKFGMALTRQRVLQLHHHVLQRLQDRArLPVLSVSTYDTVETYQGQ---MTPESRTRLITRVRQLLAQGFIPLLFGDAVFDIAWG 188
                 9999****9*****************************7663799999999888888888...777777777999************************ PP

                 EEEE-HHHHHHHHHHHCTS.SEEEEEESSSSCESSTTTTCCTTCECCEEEHHHCHH.................CSSS.TTTHHHHC CS
   AA_kinase 155 lgrgssDtiaallAealgA.dkliiltdVdGVydadpkkvpdarllpeisvdeaee.................saselatgGmkvk 222
                  +++s+D +  +lA  +g   +++++tdV G+y++dpk+ +da+l++++++++a+                   +  ++tg+m +k
  CCE28638.1 189 ATILSGDALMHALATDMGSvQRCVFVTDVAGIYTRDPKIFDDATLIRQLRCSSADRdqgqgiceephlaasvvGHVDDVTGSMSSK 274
                 ***************88777***********************************9888888888777777766666777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2332.46
//
Query:       CCE28639.1  [L=613]
Description: related to Glucose oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-36  125.6   0.0    4.5e-36  124.7   0.0    1.4  1  GMC_oxred_N    GMC oxidoreductase
    9.3e-26   91.1   0.0    1.8e-25   90.2   0.0    1.5  1  GMC_oxred_C    GMC oxidoreductase
  ------ inclusion threshold ------
      0.016   14.3   0.4        3.4    6.6   0.1    2.3  2  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   0.0   7.5e-40   4.5e-36       1     295 [.      38     349 ..      38     350 .. 0.83

  Alignments for each domain:
  == domain 1  score: 124.7 bits;  conditional E-value: 7.5e-40
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrlimvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRtpaad 98 
                  +d++++g+G+ g ++  R      +svl++eag++ +     + a+         n++y  + +  ++ + +i  aG+ +GG++++N+++++R+++a 
   CCE28639.1  38 FDYVIVGAGLSGITLSGR-----GHSVLIIEAGPDGSWNPAVFNADSRVYPATYCNWNYPVHNNDGVKLNKTID-AGACIGGSTSINGMVWYRPTEAE 129
                  69************5554.....579********9988777777777777888888888877777777777777.*********************** PP

  GMC_oxred_N  99 ldeWeeeaglegwssdevlpafkkvetaqale...........sdlhgvdgrlgvtekgkeesplnkallkaaeelGlp...vprdlngkhqcGvcll 182
                  ld+ e   g++gw++ +++p+++ +e++  +              +hg  g ++ +   + + p+   l k a    +p   +++dl++ ++  +  +
   CCE28639.1 130 LDRLEHL-GNPGWNWGTLEPYMEAIERNIPPTdeqiaqgagldPAVHGYHGVVNTSFPTPMRIPRAVRLYKEALPHAFPglsISNDLSNRSSVVSAST 226
                  ***9998.******************888777999999999987788888888876666666677666666666666666668888888855555544 PP

  GMC_oxred_N 183 gvtcrtg......arqstarawLrpal.erpnleiltgakaekiilegrkkravGVeasdkkgt...vkrlvvaakevvvaaGalnsPqlLqrSGlGk 270
                   +t + +      +r+s+a+a L     +r +l++l + +++k+ +  ++ ra GV++s + +     +++v+a k v++aaG+l++ ++L+rSG+Gk
   CCE28639.1 227 SWTIWYDaatglmKRSSAADALLWAPSqQRSSLTVLANHTVDKVNFG-QGLRADGVRFSPTLSRnaeEQFNVRAVKSVILAAGTLATAPILERSGVGK 323
                  4443332111133799999999977765999*************886.89********987666677899**************************** PP

  GMC_oxred_N 271 aehLkevgvdvvvdlp.vGknLqdHp 295
                  a+ L    v+ vvdlp vG+nL d+p
   CCE28639.1 324 ANVLSAAKVKQVVDLPgVGANLNDQP 349
                  ************************97 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.0     3e-29   1.8e-25       1     144 []     462     601 ..     462     601 .. 0.86

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 3e-29
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-S CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGa 98 
                  P srG++++ss++p + p+i p++l+d +d + +v + +  r+++++++l    + l + a ++++   + +d++  + ++ ++ +  H++G ++M +
   CCE28639.1 462 PLSRGHIHISSANPFDFPIIVPRFLTDSFDQQVAVTVARRSRDLWTSPSL----AHLVADAYHDPRIGPNGTDADYLAWFQGKAGGAGHWIGATAMLP 555
                  78**********************************************54....33333333333333444444466666668999************ PP

                  TCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  99 dpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  ++  +VVD+ lrv+g++nLrVvDa v+P +++ + ++t +a+A++a
   CCE28639.1 556 RELGGVVDPLLRVYGTKNLRVVDAGVLPFQVTSHMMSTLYAVAQRA 601
                  *******************************************997 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1   0.00057       3.4       1      33 [.      39      67 ..      39      75 .. 0.85
   2 ?    5.7   0.0    0.0011       6.7     153     204 ..     255     312 ..     193     334 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00057
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   D +++G+Gl+G    ++++ +G++v+++e ++ 
     CCE28639.1 39 DYVIVGAGLSG----ITLSGRGHSVLIIEAGPD 67
                   78*******77....66778*********9986 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0011
                    TCT.EEEEESEEEEEEEECTT.EEEEEEEEET...TTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 153 kag.vdfqerteadeLivedg.rvtGavvenp...esgrevrirak.avvlatgGfgr 204
                    ++  +++++++ +d+++  +g r+ G+ +++    + ++++ +ra   v+la+g    
     CCE28639.1 255 QRSsLTVLANHTVDKVNFGQGlRADGVRFSPTlsrNAEEQFNVRAVkSVILAAGTLAT 312
                    333499************8889*****99988998888899****99*******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4548.41
//
Query:       CCE28640.1  [L=290]
Description: related to 15-hydroxyprostaglandin dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-39  133.6   0.0    7.5e-39  133.2   0.0    1.1  1  adh_short      short chain dehydrogenase
    1.7e-29  103.0   0.0    2.3e-29  102.6   0.0    1.1  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    1.4e-07   31.6   0.1    3.8e-07   30.2   0.0    1.6  2  KR             KR domain
     0.0059   16.1   0.1      0.013   15.0   0.0    1.5  2  Epimerase      NAD dependent epimerase/dehydratase family
     0.0095   15.4   0.1      0.015   14.7   0.1    1.2  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.0   2.1e-42   7.5e-39       1     187 [.       8     206 ..       8     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 2.1e-42
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCH.HHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.........S- CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrse.ekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.........tg 89 
                 k++l+tG++sGIG+++ ++l++ G++v+++d ++ ++l  +++  +e  ++a ++++Dvt+++e++al+++ v+++g+ld+++  AGi          +
  CCE28640.1   8 KTALITGGASGIGLQVTRQLLAGGCSVMIADLKSsDELDVLVQGAHEGHTRASFVRTDVTKWQELDALFSQTVQEFGRLDIVIPAAGIfepegvssfWQ 106
                 79***************************876550566666666666699**************************************98877766534 PP

                 -SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH..HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHH CS
   adh_short  90 sgpfselseeewervievNltgvflltravlpaml..kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdm 186
                 +++ +++ e+    +++vN+t ++ +t+++++ +   k   G +v +sS+a++ p+  ++ Y++sK+a+ g++r+l +     +ir+navaPG+v+T++
  CCE28640.1 107 PNQGKDTPEASSFYCLDVNVTHPIRATQLAIDSFQrqKLGHGVVVLISSIAAQIPLLPTPLYATSKHAISGFVRCLTHLEPLMNIRINAVAPGCVKTPL 205
                 444455555556677*******************955566899******************************************************98 PP

                 H CS
   adh_short 187 a 187
                  
  CCE28640.1 206 W 206
                 6 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.0   6.4e-33   2.3e-29       1     194 [.      14     222 ..      14     246 .. 0.87

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 6.4e-33
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.......CSS-G CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnagiapk.......lkgpf 87 
                   G asgIG ++ ++l + G++v+++dl+ ++  + + + a e+ ++  ++++DVt+ ++++al++++v++fg+lDi++ +agi ++         ++ 
    CCE28640.1  14 GGASGIGLQVTRQLLAGGCSVMIADLKSSDeLDVLVQGAHEGHTRasFVRTDVTKWQELDALFSQTVQEFGRLDIVIPAAGIFEPegvssfwQPNQG 110
                   669************************999755555666665544246***********************************99998887767788 PP

                   GGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC....CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGG CS
  adh_short_C2  88 letsreefdraldvnlyslfllakaalplmkeg....gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaas 180
                    +t++++    ldvn++  ++ ++ a+  ++++    g +v +ss++a++ +  +  y+++K+a+ +++r+l +     +iR+Nav+pg +kT++++
    CCE28640.1 111 KDTPEASSFYCLDVNVTHPIRATQLAIDSFQRQklghGVVVLISSIAAQIPLLPTPLYATSKHAISGFVRCLTHLEPLMNIRINAVAPGCVKTPLWD 207
                   89*999999*******************88888899999*********************************987777*****************77 PP

                   GSTT.HHHHHHHHHH CS
  adh_short_C2 181 gikg.fdelleelea 194
                   +  g f+e l+++  
    CCE28640.1 208 ARLGlFKEGLDHWVP 222
                   665548877777654 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0     1e-10   3.8e-07       2      95 ..       9      99 ..       8     105 .. 0.89
   2 ?   -2.2   0.0      0.93   3.4e+03     130     144 ..     149     163 ..     137     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1e-10
                EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-------- CS
          KR  2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdk 95
                t litGG+ g+Gl+++r+l++ g + ++   +s   +++ + l++  ++  ++ ++v+ Dv++ +++ al+++  +e++++  vi aAg+++ +
  CCE28640.1  9 TALITGGASGIGLQVTRQLLAGGCSVMIADLKS---SDELDVLVQGAHEGHTRASFVRTDVTKWQELDALFSQTVQEFGRLDIVIPAAGIFEPE 99
                579******************998888777666...34445589999999***************************************99865 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.93
                 EEEEEEEHHHHH--T CS
          KR 130 ffvlfSSiagllgsa 144
                 ++vl+SSia+ +   
  CCE28640.1 149 VVVLISSIAAQIPLL 163
                 578999999876555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.5e-06     0.013       1      73 [.      10      94 ..      10     103 .. 0.78
   2 ?   -3.1   0.0       1.2   4.2e+03     135     150 ..     161     176 ..     156     182 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.5e-06
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHHH.....T-SEEEE--S CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfkee.....qpdavihlAa 73
                +l+tG++  iG +++++ll+ g  v+  d +ss++   + +          ++v+ d+t+ ++l++lf+++     + d+vi +A+
  CCE28640.1 10 ALITGGASGIGLQVTRQLLAGGCSVMIADLKSSDELDVLVQ-GaheghtraSFVRTDVTKWQELDALFSQTvqefgRLDIVIPAAG 94
                59**********************99999995555444433.2599999*************999999864211144666666665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.2
                 ----SSHHHHHHHHHH CS
   Epimerase 135 plkpnspYaaaKlage 150
                 pl p+  Ya +K+a+ 
  CCE28640.1 161 PLLPTPLYATSKHAIS 176
                 66788889***99986 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   4.1e-06     0.015       1      74 [.      11      79 ..      11      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.1e-06
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74
                   LiTG+a  iG  ++++Ll+ g  v++  +++ss   ++++ l +  + e +++ ++++ D+t  ++l+ l++++
     CCE28640.1 11 LITGGASGIGLQVTRQLLAGGCSVMI-ADLKSS---DELDVLVQGAH-EGHTRASFVRTDVTKWQELDALFSQT 79
                   9**********************975.555555...45677776665.45789*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2288.76
//
Query:       CCE28641.1  [L=209]
Description: uncharacterized protein CPUR_02329 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-14   53.0   0.0    5.8e-14   52.2   0.0    1.5  1  GST_N     Glutathione S-transferase, N-terminal domain
    1.7e-10   41.1   0.0    3.3e-10   40.2   0.0    1.5  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    5.3e-09   36.3   0.0    9.4e-09   35.5   0.0    1.4  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    4.9e-08   33.1   0.0    8.4e-08   32.3   0.0    1.4  1  GST_C     Glutathione S-transferase, C-terminal domain
    9.4e-06   25.6   0.1      6e-05   23.0   0.1    2.2  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    1.3e-05   25.4   0.0    2.3e-05   24.5   0.0    1.4  1  GST_C_3   Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.022   14.5   0.0    1.4  1  GST_C_6   Glutathione S-transferase, C-terminal domain
      0.078   13.7   0.0       0.58   10.9   0.0    2.3  2  GST_N_4   Glutathione S-transferase N-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   2.6e-17   5.8e-14       2      75 ..       2      75 ..       1      76 [. 0.91

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 2.6e-17
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEETTEEEESHHHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedngkkltESraIleYia 75
                v+ ly  +   + h+++++l++ g++y+ + +d  a+++k p +l++np+g +Pa ++n++++tES+aI++Y a
  CCE28641.1  2 VFQLYADPITVNCHKVLAALKHIGADYKMIYVDYLAQQQKLPGYLRINPNGTIPAAVHNDLIITESNAIMQYAA 75
                6778888888999********************97777767*******************************87 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.5e-13   3.3e-10       1      71 [.       5      78 ..       5      82 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.5e-13
                EES-TTSHHHHHHHHHHHHHT--EEEE---...TTTTHHHHHHH-TT--SSEEETTS-EEESHHHHHHHHHHHH CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevt...pgehdeellaknplgkvPvLeddgealtdSlaIidyLeely 71
                Ly  p  +++ +v  aL++ g +++   v+   ++++ + +l++np+g++P+ ++++ ++t+S aI++y  +  
  CCE28641.1  5 LYADPITVNCHKVLAALKHIGADYKMIYVDylaQQQKLPGYLRINPNGTIPAAVHNDLIITESNAIMQYAADIS 78
                8999999******************888876668889********************************87765 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   4.2e-12   9.4e-09       4      68 ..      13      75 ..      11      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4.2e-12
                HHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHH CS
     GST_N_2  4 wahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlryle 68
                 +h+vl al++ g +++ + v +   + +k + ++r+np+gt+P+ ++ +  +i+eS +I++y +
  CCE28641.1 13 NCHKVLAALKHIGADYKMIYV-DYLAQQQKLPGYLRINPNGTIPAAVH-NDLIITESNAIMQYAA 75
                59***************9999.55677888899**************7.779**********976 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   3.8e-11   8.4e-08      17      89 ..     126     196 ..     105     200 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 3.8e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHH CS
       GST_C  17 eekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawleri 89 
                 +  +e++++ ++++  +  ++l+ +l k +y +Gd +t+AD+a+ +   ++   +l +  ++ p+lk+w+  +
  CCE28641.1 126 QPPDEAALADEQPRWLALANVLNSQLGKTKYMIGDTVTIADFAVMAPMHMHTLQKLPL--DGLPHLKRWIADM 196
                 468999999*****************************************99999888..6********9876 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   2.7e-08     6e-05       1      67 [.     130     193 ..     130     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.7e-08
                 HHHHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHH..HHHHHHHHHHS----TT-HHHHHHH CS
     GST_C_2   1 eaaveraleqldaaldaleahLadspflfGdqptlaDialap..flvrlraagpgfdireaypnlraWl 67 
                 eaa+++ + ++ a   +l+++L++  ++ Gd+ t+aD+a+ +  + + l   +      +++p+l++W+
  CCE28641.1 130 EAALADEQPRWLALANVLNSQLGKTKYMIGDTVTIADFAVMApmHMHTLQKLP-----LDGLPHLKRWI 193
                 5888999999***************************9998722333444444.....67888888887 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     1e-08   2.3e-05      26      90 ..     134     200 ..     112     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1e-08
                 HHHHHCHHHHHHHHHHC.HGTSSSSTTS--HHHHHHHHHHHHHHHH.TCCCC-HHHHHHHHHHHTSH CS
     GST_C_3  26 eerlpkflkyfekvlkk.kgggylvgdklTyADlalfqvldgleea.ealkkfpklkalyervearp 90 
                  ++ p++l+  + + ++  +++y++gd++T+AD+a+++ +++++ +   l+  p+lk++++ +   p
  CCE28641.1 134 ADEQPRWLALANVLNSQlGKTKYMIGDTVTIADFAVMAPMHMHTLQkLPLDGLPHLKRWIADMDRVP 200
                 5566888876665555756777****************88888877444599*******99988766 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   9.8e-06     0.022       6      51 ..     145     193 ..     142     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.8e-06
     GST_C_6   6 eaLselLgdkkyFfGdkPtslDAlvFGhlaqilytplesp...elrell 51 
                 ++L + Lg+ ky+ Gd++t +D +v + +++   ++l+     +l++ +
  CCE28641.1 145 NVLNSQLGKTKYMIGDTVTIADFAVMAPMHMHTLQKLPLDglpHLKRWI 193
                 68999********************998888866655555666666665 PP

>> GST_N_4  Glutathione S-transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00026      0.58       2      86 ..      13     101 ..      12     114 .. 0.66
   2 ?   -2.0   0.0       2.7   6.1e+03      64      85 ..     131     151 ..     107     157 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00026
     GST_N_4   2 fclkletyLrmagipyelepssnemhaspkgklP.fielngel..........liadsefiieflkekgvdldaelseeqkadaralkalveekly 86 
                 +c k+ + L+  g +y++ ++   +  + ++klP ++++n +            i +s+ i++++ +   d+ ae+ ++    +   +al++++l+
  CCE28641.1  13 NCHKVLAALKHIGADYKMIYVDY-L--AQQQKLPgYLRINPNGtipaavhndlIITESNAIMQYAADISGDKGAEVYPK----DLRQRALINSWLF 101
                 57777777777777777776664.4..456666644444333333666666669**********998776666777776....3445555555555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.7
     GST_N_4  64 aelseeqkadaralkalveekl 85 
                 a l +e + ++ al + ++++l
  CCE28641.1 131 AALADE-QPRWLALANVLNSQL 151
                 445544.578888877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1518.70
//
Query:       CCE28642.1  [L=425]
Description: uncharacterized protein CPUR_02330 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-07   31.7   0.0      7e-07   29.5   0.0    2.2  1  RT_RNaseH        RNase H-like domain found in reverse transcr
    1.3e-05   25.1   0.0    0.00025   21.0   0.0    2.7  2  RT_RNaseH_2      RNase H-like domain found in reverse transcr
  ------ inclusion threshold ------
      0.088   13.0   2.4       0.21   11.8   2.4    1.5  1  DUF3886          Protein of unknown function (DUF3886)
       0.11   13.2   1.6        1.3    9.8   2.5    2.0  2  DUF2203          Uncharacterized conserved protein (DUF2203)
       0.88    9.5   4.9        1.5    8.8   4.9    1.2  1  Ax_dynein_light  Axonemal dynein light chain


Domain annotation for each model (and alignments):
>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.9e-10     7e-07       6      87 ..     272     360 ..     267     376 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.9e-10
                 EEEEEEECTEEEEEEEEEETTE.........EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS--EEEE-SS--TTTTT- CS
   RT_RNaseH   6 filetDAsddgigavLsqreedge.......erpiafaSrklsgaernystiekellAivaalkkfrhylqgrkftvitDhknlkylls 87 
                 f+l+tDAs++gig+  +  +  ++           +++ r+l++ er  ++   e++Ai  a+kk+ +  +++  +++tD++  +  ++
  CCE28642.1 272 FHLFTDASNTGIGGFFYCGNTAQSdwrralpLPQEQMFARSLHPNERSHHINVTETIAIATAIKKWAYSWRHATLIIHTDNTTAEAGFR 360
                 89**************99444433443333322237899****************************9999999******998776665 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.19   6.9e+02      19      40 ..     110     131 ..     105     134 .. 0.85
   2 !   21.0   0.0     7e-08   0.00025      31      92 ..     272     340 ..     260     348 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.19
  RT_RNaseH_2  19 apvLahpdpdkpfiletDaSdt 40 
                   pvL +  +d  f++e+DaS +
   CCE28642.1 110 YPVLGPRPHDGVFTVEIDASGK 131
                  588899999999********75 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 7e-08
  RT_RNaseH_2  31 filetDaSdtgigavLsqedddgk.erpi......afaSrklskaernysttekellAivwalkkfrhy 92 
                  f+l tDaS+tgig+  +  +  ++ +r        +++ r+l++ er  ++   e  Ai  a+kk+ + 
   CCE28642.1 272 FHLFTDASNTGIGGFFYCGNTAQSdWRRAlplpqeQMFARSLHPNERSHHINVTETIAIATAIKKWAYS 340
                  89**************999888887764323344479*****************************875 PP

>> DUF3886  Protein of unknown function (DUF3886)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.4   5.8e-05      0.21      16      51 ..      44      79 ..      41      89 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.8e-05
     DUF3886 16 vlekLkakkkeLkeeeekrkeeekarreeerkarek 51
                 +++L+ak + +k+e +kr ++e +r e e k   +
  CCE28642.1 44 EANRLQAKLDAMKAEAAKRAQDEAKRIEDEAKTIVR 79
                5799************************99998665 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.5   0.00035       1.3      10      80 ..      26      94 ..      20      97 .. 0.75
   2 ?   -0.3   0.0      0.47   1.7e+03      47      91 ..     362     407 ..     324     418 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00035
     DUF2203 10 alLpllkelleelralrkeleeleeeleeakaeaekseaaeleaeleeleaeieelveeiee..lGvevkdle 80
                al+ +++e  ++ ++  +e+++l+++l++ kaea    a++++ e +++e+e++ +v+e+++  +Gve  d++
  CCE28642.1 26 ALIAKIQESEANTQRSVDEANRLQAKLDAMKAEA----AKRAQDEAKRIEDEAKTIVRELSNelFGVESEDID 94
                5677777888888888888888888888888776....78888899999999999999987533677777765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.47
     DUF2203  47 eaaeleaeleeleaei.eelveeieelGvevkdleaglvDFpakld 91 
                 ++a+ + + +++++ + + + + i+ + + v ++++gl D  ++ld
  CCE28642.1 362 GQARGRPANRSIQSALaRCAARDIKIHCIRVTSADNGLADALSRLD 407
                 3444554445544444044567788888899999999999888777 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.9   0.00041       1.5     121     176 ..      24      79 ..      16      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00041
  Ax_dynein_light 121 kselekkikeLeeekeelekqvaelkaklealekrekerrqeeekkheeeieflkk 176
                      +s l +ki+e e++ ++  ++ + l+akl+a+++++++r q e k+ e+e + + +
       CCE28642.1  24 RSALIAKIQESEANTQRSVDEANRLQAKLDAMKAEAAKRAQDEAKRIEDEAKTIVR 79 
                      5677889******************************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1650  (0.0920297); expected 358.6 (0.02)
Passed bias filter:                     1007  (0.056166); expected 358.6 (0.02)
Passed Vit filter:                       136  (0.00758548); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 3012.03
//
Query:       CCE28643.1  [L=385]
Description: uncharacterized protein CPUR_02331 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-34  118.4   0.0    6.7e-34  117.4   0.0    1.5  1  PIP5K     Phosphatidylinositol-4-phosphate 5-Kinase


Domain annotation for each model (and alignments):
>> PIP5K  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.0   3.7e-38   6.7e-34       5     273 ..      99     373 ..      97     374 .. 0.81

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 3.7e-38
                 EEEE----SSS--EEEETTSSEEEEEE-HH.HHHHHHH.HHHHHHHHHTT-TT--S--EEEEEEEE.E......TTEEEEEEEEE-SS-........TT CS
       PIP5K   5 lkelsseGkSgsffylteDkkfiiKtitks.evkflrk.llpeYyehvkenpnsLltrfyglhrvklk......ggkkvrfvVmenlfp........td 87 
                 l++  + G+S s + +t+D+k+++K++++s e++ + + l+++Y+ hvk++p+sLl+r+++++    +      g ++ ++++menl++        ++
  CCE28643.1  99 LESAADLGYSDSSLLHTSDGKYLVKSLNRSrESDSVVNeLFDSYTVHVKTHPSSLLARVTDVLYAPRAtlgsilGIQSRHHIIMENLLQglgnnrdgPA 197
                 6778899**********************9988777776***********************99933356666666666*********99987755544 PP

                 S--S.EEEEE-S--TT-S--HHHHTSSS-EEEHHHHHHHST.....EEE-HHHHHHHHHHHHHHHHHHHHTTB-S-EEEEEEEB--------------- CS
       PIP5K  88 keih.eryDLKGstvgReakkkeeekkektlkDlDliekkek....lklgkekreelleqlekDvefLeslnimDYSLLlGihnsekeekeekkesess 181
                  +++ e+yDLK+   +   ++++  + +    D  ++    +    +   +  ++el++ l +D++fL++ ni +YSLL++   +++ +  ++      
  CCE28643.1 198 DDVKwETYDLKPDDSS--SSEHDLADGASLRSDEAVRGFVGEildqVDAPPLVKQELIDILLEDTKFLARSNIANYSLLFARFPKAEVRPAATI----- 289
                 46669*******8888..4444555555555555544443336777999*******************************99666533333222..... PP

                 -----------------------------SEEEEESSSSEEEEEEEEE----B--------------.......--------TTHHHHHHHHHHHHHHH CS
       PIP5K 182 ssekesekseeeaseeeeeseeeedeegekakeensedgkevyylgiIDiLqkynlkKklehalksl.......kkdkksisavpPkeYaeRFlkfiek 273
                              + ee++ +++ + + +  ++ +s+dgk++y+++++D+   ++++K++++  +++        k++++++ ++P+eY++ F++++++
  CCE28643.1 290 -------------EGEEDQIASTVQVSPSWRSGVSSTDGKWIYRAALLDF--LWSTHKTCAKERTGFvgaisslFKKGRDSIPTEPEEYRSEFMDVVRR 373
                 .............22333445556667778889999**************..9*********99998899999999999****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2944.38
//
Query:       CCE28644.1  [L=121]
Description: uncharacterized protein CPUR_02332 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.058   13.5   0.0      0.089   12.9   0.0    1.3  1  Insulin_TMD     Insulin receptor trans-membrane segment
       0.09   12.3   0.0       0.12   12.0   0.0    1.2  1  DUF4328         Domain of unknown function (DUF4328)
       0.15   11.5   1.6        0.7    9.3   1.7    1.8  2  MtrF            Tetrahydromethanopterin S-methyltransferase, 
       0.21   12.6   0.0       0.33   12.0   0.0    1.2  1  DUF4834         Domain of unknown function (DUF4834)
       0.51   10.4   2.3        2.6    8.2   0.2    2.3  2  Tecti-min-caps  Tectiviridae, minor capsid


Domain annotation for each model (and alignments):
>> Insulin_TMD  Insulin receptor trans-membrane segment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.5e-05     0.089      10      37 ..      59      86 ..      54      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
  Insulin_TMD 10 dpsnivkIvigPviciillllvigavfv 37
                 ++  iv Ivig+v  i+ll+ +i + f 
   CCE28644.1 59 NAGAIVGIVIGSVTGILLLIWIIRSCFN 86
                 667899*****************99996 PP

>> DUF4328  Domain of unknown function (DUF4328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.2e-05      0.12      19      55 ..      60      96 ..      46     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.2e-05
     DUF4328 19 lagllalllllaaavvflvWlrraranaealapgrhr 55
                +++++ ++++ ++++++l+W++r   n+ + +++r++
  CCE28644.1 60 AGAIVGIVIGSVTGILLLIWIIRSCFNLGEPRQERES 96
                67788999*******************9987776665 PP

>> MtrF  Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.27   9.7e+02      15      30 ..      22      37 ..      15      38 .. 0.84
   2 ?    9.3   1.7   0.00019       0.7      35      57 ..      56      78 ..      54      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.27
        MtrF 15 svvedirYraqLiaRe 30
                s+++ i  ++ L aR+
  CCE28644.1 22 STTNTIASKSALFARQ 37
                68889999999*9996 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00019
        MtrF 35 SGvsatgivGfaiGfvlAllLvv 57
                S ++a +ivG++iG v+ +lL++
  CCE28644.1 56 STLNAGAIVGIVIGSVTGILLLI 78
                889999**************998 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.1e-05      0.33       9      55 ..      64     111 ..      60     120 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.1e-05
     DUF4834   9 ifiiailviglsilsvilrtvfglgsrkkssksaq.kqfgnstnsnqq 55 
                 + i++  v g+ +l +i+r+ f lg+ +++ +s+   + g++ +++ +
  CCE28644.1  64 VGIVIGSVTGILLLIWIIRSCFNLGEPRQERESMYhYSVGSGLSGQDE 111
                 6788899****************9987776644430333333333322 PP

>> Tecti-min-caps  Tectiviridae, minor capsid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2     0.056     2e+02       5      23 ..       5      22 ..       1      29 [. 0.57
   2 ?    8.2   0.2   0.00073       2.6       2      39 ..      32      74 ..      31     115 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.056
                    -SSS---SS--TT------ CS
  Tecti-min-caps  5 npqfpyagpvpipgpapte 23
                     p + y+ pvpi    pt 
      CCE28644.1  5 LPYMGYSRPVPILK-RPTS 22
                    35566777999964.2333 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00073
                    ----SSS---SS--TT--------------.....---B---- CS
  Tecti-min-caps  2 alinpqfpyagpvpipgpaptetmpllnyr.....vegriagi 39
                    al   q p +  v +p pap++    ln       v g ++gi
      CCE28644.1 32 ALFARQAPPTVTVTVPAPAPSNDSSTLNAGaivgiVIGSVTGI 74
                    67888999999**********9999998632111134444554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 923.11
//
Query:       CCE28645.1  [L=402]
Description: uncharacterized protein CPUR_02333 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2920.44
//
Query:       CCE28646.1  [L=537]
Description: uncharacterized protein CPUR_02334 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-23   82.1   0.0    1.1e-05   25.9   0.1    4.5  4  Ank_2     Ankyrin repeats (3 copies)
    3.7e-14   52.9   0.1      0.099   13.3   0.0    5.9  5  Ank_4     Ankyrin repeats (many copies)
    2.7e-10   39.6   2.4        4.9    8.0   0.0    7.6  8  Ank_3     Ankyrin repeat
      2e-08   34.3   1.3        0.2   12.0   0.0    6.5  6  Ank_5     Ankyrin repeats (many copies)
    5.2e-05   23.5   3.4         48    4.6   0.0    6.4  7  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.1e-05     0.075      33      77 ..     149     205 ..     117     215 .. 0.60
   2 !   25.9   0.1     3e-09   1.1e-05       4      77 ..     254     339 ..     252     346 .. 0.76
   3 !   20.6   0.0   1.4e-07   0.00049      27      79 ..     354     414 ..     339     417 .. 0.85
   4 !   16.7   0.0   2.4e-06    0.0085      29      80 ..     417     476 ..     413     478 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
       Ank_2  33 AakngnleivklLleh.......ad.....ndgrtpLhyAarsghleivklLlekga 77 
                 A+  g+l +vk L+++       +d      +   p+ +Aa  g+l+iv++Ll+kga
  CCE28646.1 149 AVTIGDLRLVKSLMKErqtsqpsTDadndtPYFSRPIVIAAGLGYLDIVRYLLKKGA 205
                 333455566666665334444543311222112225666666666666666666665 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 3e-09
       Ank_2   4 Aakn.gnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......ad..ndgrtpLhyAarsghleivklLlekga 77 
                 Aa + ++ ++v+ Ll  +++ +  k +++  L++Aa ++ +eiv +Ll++       d    g+  L  A+++++ ei+++L++ g+
  CCE28646.1 254 AAIYgKHKHVVRELLlPEYRKScsKvENLLCLIAAATAD-VEIVNMLLNAeemvklSDirPLGQEMLWEAIKHDRNEIAQVLFDEGC 339
                 66662688******9866555543367788888888885.7*******95578776335588***********999*******8775 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 1.4e-07
       Ank_2  27 ktaLhyAakngnleivklLleh.....ad...ndgrtpLhyAarsghleivklLlekgadi 79 
                 + + ++Aa  g ++++ +L+ +      +   + g++p  +Aa sg++e+v lLl+++ad+
  CCE28646.1 354 LDPFQWAAYLGRIDMMIFLIGQgvsteRNeygRRGYSPVEVAAMSGQEEAVGLLLDRDADP 414
                 56899***************87776553356677*********************999997 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 2.4e-06
       Ank_2  29 aLhyAakngnleivklLleh....ad....ndgrtpLhyAarsghleivklLlekgadin 80 
                 aL+ A+++ +  i klLl+     ++      gr++L +A+  ++l+ + lL+e+g+++n
  CCE28646.1 417 ALWSATEHSQPRITKLLLDRfpniLNwddgHVGRSALWNAVTAKNLRNITLLVEHGVSLN 476
                 89999999999*******96666755535555************************9987 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0054        20       4      26 ..     184     206 ..     176     215 .. 0.80
   2 !    9.1   0.1   0.00056         2       2      55 .]     249     300 ..     248     300 .. 0.92
   3 !    6.7   0.0    0.0031        11       5      55 .]     319     373 ..     317     381 .. 0.85
   4 !   13.3   0.0   2.8e-05     0.099       2      55 .]     389     434 ..     388     434 .. 0.90
   5 !   10.2   0.0   0.00025      0.91       2      28 ..     450     476 ..     449     495 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0054
       Ank_4   4 aLhyaaisgrlelvrlLlekgad 26 
                 ++  aa  g l++vr+Ll kga 
  CCE28646.1 184 PIVIAAGLGYLDIVRYLLKKGAR 206
                 56667779**********99986 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00056
       Ank_4   2 ltaLhyaaisgrlelvrlLl..ekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 l++L +a++  +  +vr Ll  e+++++ ++     + +  iAa + +vei+ +Ll
  CCE28646.1 249 LSPLEAAIYGKHKHVVRELLlpEYRKSCSKV----ENLLCLIAAATADVEIVNMLL 300
                 68999************8888**********....7779999**********9997 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0031
       Ank_4   5 LhyaaisgrlelvrlLlekg.adinaq...dnrsGetalhiAakrgnveilklLl 55 
                 L  a+++ r e+++ L++ g +   a+   + rs + +++ Aa+ g++++ ++L+
  CCE28646.1 319 LWEAIKHDRNEIAQVLFDEGcVHFTARaasPTRSALDPFQWAAYLGRIDMMIFLI 373
                 5678999999999999988766677766656688999**************9998 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 2.8e-05
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +++   aa+sg++e+v lLl+++ad+          al+ A  +++++i+klLl
  CCE28646.1 389 YSPVEVAAMSGQEEAVGLLLDRDADPLL--------ALWSATEHSQPRITKLLL 434
                 578899**************99998665........6**************997 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00025
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadin 28 
                 ++aL +a+ + +l+++ lL+e+g+++n
  CCE28646.1 450 RSALWNAVTAKNLRNITLLVEHGVSLN 476
                 899*********************976 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0035        13       5      27 ..     184     205 ..     182     209 .. 0.88
   2 ?    0.9   0.0       0.3   1.1e+03       8      23 ..     253     269 ..     248     272 .. 0.84
   3 ?   -0.4   0.2      0.77   2.8e+03       8      23 ..     286     301 ..     282     303 .. 0.86
   4 ?    3.0   0.0     0.061   2.2e+02       2      23 ..     315     336 ..     314     342 .. 0.88
   5 !    6.8   0.0    0.0035        13       5      27 ..     356     377 ..     353     379 .. 0.90
   6 !    8.0   0.0    0.0014       4.9       2      29 ..     388     414 ..     387     416 .. 0.93
   7 ?   -2.4   0.0       3.5   1.2e+04       9      29 ..     421     440 ..     417     441 .. 0.71
   8 ?    4.2   0.0     0.024        86       2      30 ..     449     476 ..     448     477 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0035
       Ank_3   5 pLhlAarsgnleivkfLlenkga 27 
                 p+ +Aa  g l+iv++Ll+ kga
  CCE28646.1 184 PIVIAAGLGYLDIVRYLLK-KGA 205
                 7789***************.887 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.3
       Ank_3   8 lAarsgnle.ivkfLle 23 
                 +Aa +g+++ +v+ Ll 
  CCE28646.1 253 EAAIYGKHKhVVRELLL 269
                 69999999879**9995 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.77
       Ank_3   8 lAarsgnleivkfLle 23 
                 +Aa  +++eiv +Ll+
  CCE28646.1 286 IAAATADVEIVNMLLN 301
                 788889999*****97 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.061
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 G+ +L +A+++++ ei++ L++
  CCE28646.1 315 GQEMLWEAIKHDRNEIAQVLFD 336
                 7889****************98 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0035
       Ank_3   5 pLhlAarsgnleivkfLlenkga 27 
                 p+ +Aa  g++++++fL+   g+
  CCE28646.1 356 PFQWAAYLGRIDMMIFLIG-QGV 377
                 899***************9.675 PP

  == domain 6  score: 8.0 bits;  conditional E-value: 0.0014
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G++p  +Aa+sg  e v +Ll+ + ad+
  CCE28646.1 388 GYSPVEVAAMSGQEEAVGLLLD-RDADP 414
                 999*******************.99998 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 3.5
       Ank_3   9 AarsgnleivkfLlenkgadv 29 
                 A ++  + i k+Ll+ + +++
  CCE28646.1 421 ATEHSQPRITKLLLD-RFPNI 440
                 566667778999999.77665 PP

  == domain 8  score: 4.2 bits;  conditional E-value: 0.024
       Ank_3   2 GetpLhlAarsgnl.eivkfLlenkgadvn 30 
                 G+++L  A+ + nl + + +L+e +g+ +n
  CCE28646.1 449 GRSALWNAVTAKNLrN-ITLLVE-HGVSLN 476
                 99************66.999999.8*9998 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   5.5e-05       0.2      10      40 ..     176     205 ..     171     208 .. 0.79
   2 ?    0.7   0.0      0.19     7e+02      18      38 ..     250     272 ..     240     277 .. 0.80
   3 ?    1.4   0.1      0.12   4.2e+02      22      46 ..     286     310 ..     280     312 .. 0.81
   4 ?    3.2   0.0     0.033   1.2e+02      22      40 ..     321     339 ..     309     345 .. 0.81
   5 !    5.4   0.0    0.0068        24      19      41 ..     356     378 ..     347     395 .. 0.68
   6 ?    2.7   0.1     0.046   1.6e+02       1      43 [.     433     476 ..     433     509 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.5e-05
       Ank_5  10 nrldgggntpLhvAakygaadvvrlLlarga 40 
                 n++  ++  p+ +Aa  g++d+vr+Ll+ ga
  CCE28646.1 176 NDTPYFS-RPIVIAAGLGYLDIVRYLLKKGA 205
                 4444444.9******************7664 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.19
       Ank_5  18 tpLhvAakygaadvvrlLl..ar 38 
                 +pL  A+++ +  vvr+Ll  ++
  CCE28646.1 250 SPLEAAIYGKHKHVVRELLlpEY 272
                 799***************95555 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.12
       Ank_5  22 vAakygaadvvrlLlargadlnltd 46 
                 +Aa     ++v++Ll+ ++  +l d
  CCE28646.1 286 IAAATADVEIVNMLLNAEEMVKLSD 310
                 47777899*******8888888776 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.033
       Ank_5  22 vAakygaadvvrlLlarga 40 
                  A+k+ + +++++L+++g+
  CCE28646.1 321 EAIKHDRNEIAQVLFDEGC 339
                 59*************7665 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.0068
       Ank_5  19 pLhvAakygaadvvrlLlargad 41 
                 p+ +Aa+ g+ d++++L+  g++
  CCE28646.1 356 PFQWAAYLGRIDMMIFLIGQGVS 378
                 6779**************44433 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.046
       Ank_5   1 Llehgpadvnrldgg.gntpLhvAakygaadvvrlLlargadln 43 
                 Ll+++p+ +n+ dg+ g ++L +A+ + +++ + lL+++g++ln
  CCE28646.1 433 LLDRFPNILNWDDGHvGRSALWNAVTAKNLRNITLLVEHGVSLN 476
                 78888777777777755588888888888888888888888776 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.5   8.9e+03       9      21 ..     149     161 ..     115     169 .. 0.69
   2 ?    2.1   0.0     0.083     3e+02       8      25 ..     187     205 ..     184     207 .. 0.81
   3 ?    3.2   0.0     0.038   1.4e+02       5      22 ..     251     268 ..     249     281 .. 0.81
   4 ?   -1.3   0.1         1   3.6e+03       8      24 ..     287     301 ..     283     304 .. 0.73
   5 ?    4.6   0.0     0.014        50       2      27 ..     388     414 ..     387     418 .. 0.82
   6 ?    2.4   0.0     0.069   2.5e+02       7      30 ..     419     441 ..     416     443 .. 0.63
   7 ?    4.6   0.0     0.013        48       2      28 ..     449     476 ..     449     478 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.5
                 HHHHTTHHHHHHH CS
         Ank   9 AatngkkriiklL 21 
                 A+t+g++r +k L
  CCE28646.1 149 AVTIGDLRLVKSL 161
                 4577777777765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.083
                 HHHHHTTHHHHHHHH.TTT CS
         Ank   8 lAatngkkriiklLL.hGA 25 
                 +Aa  g ++i+++LL +GA
  CCE28646.1 187 IAAGLGYLDIVRYLLkKGA 205
                 577667789******8897 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.038
                 HHHHHHHHTTHHHHHHHH CS
         Ank   5 PLHlAatngkkriiklLL 22 
                 PL  A+++++k+++++LL
  CCE28646.1 251 PLEAAIYGKHKHVVRELL 268
                 7778999999****9776 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1
                 HHHHHTTHHHHHHHHTT CS
         Ank   8 lAatngkkriiklLLhG 24 
                  Aa  ++++i+ +LL  
  CCE28646.1 287 AAA-TADVEIVNMLL-N 301
                 455.48889999999.4 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.014
                 SBBHHHHHHHHTTHHHHHHHHTT.TST CS
         Ank   2 GnTPLHlAatngkkriiklLLhG.Anl 27 
                 G++P  +Aa+ g+++ + lLL++ A++
  CCE28646.1 388 GYSPVEVAAMSGQEEAVGLLLDRdADP 414
                 78888889*99**********644997 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.069
                 HHHHHHTTHHHHHHHHTTTSTTCB CS
         Ank   7 HlAatngkkriiklLLhGAnlnal 30 
                   A    ++ri+klLL++  +n+l
  CCE28646.1 419 WSATEHSQPRITKLLLDRF-PNIL 441
                 554434449*******762.5554 PP

  == domain 7  score: 4.6 bits;  conditional E-value: 0.013
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnln 28 
                 G+++L  A+t +++r i lL+ hG +ln
  CCE28646.1 449 GRSALWNAVTAKNLRNITLLVeHGVSLN 476
                 789999999***************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3855.05
//
Query:       CCE28647.1  [L=538]
Description: uncharacterized protein CPUR_02335 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-26   93.0   0.0    1.1e-06   29.1   0.0    4.7  4  Ank_2     Ankyrin repeats (3 copies)
    3.1e-16   59.5   1.7      0.098   13.3   0.0    7.5  8  Ank_4     Ankyrin repeats (many copies)
    6.8e-16   56.8   2.0      0.013   16.0   0.0    7.5  8  Ank_3     Ankyrin repeat
    1.8e-08   34.5   0.5       0.12   12.7   0.0    5.8  7  Ank_5     Ankyrin repeats (many copies)
    7.2e-06   26.2   5.2          8    7.1   0.0    7.5  9  Ank       Ankyrin repeat
  ------ inclusion threshold ------
        0.2   11.6   0.1       0.39   10.7   0.1    1.4  1  DUF327    Protein of unknown function (DUF327)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   8.3e-08   0.00025      26      78 ..     142     206 ..     115     210 .. 0.76
   2 !   25.3   0.0   5.7e-09   1.7e-05       4      77 ..     254     338 ..     250     345 .. 0.68
   3 !   29.1   0.0   3.7e-10   1.1e-06      29      79 ..     355     413 ..     351     416 .. 0.88
   4 !   22.4   0.0   4.7e-08   0.00014       4      80 ..     394     475 ..     394     477 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 8.3e-08
       Ank_2  26 gktaLhyAakngnleivklLleh.........ad....ndgrtpLhyAarsghleivklLlekgad 78 
                  ++ L  A+  g+l++vk Lle+         +d    + gr pL +Aa  g+l+iv++Llekga 
  CCE28647.1 142 AQNTLCGAVTIGDLHLVKSLLEErqtsmpsveVDgstpYFGR-PLVIAAGLGYLDIVRYLLEKGAR 206
                 46677778888999*******966677777443344445565.8*****99***********9986 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 5.7e-09
       Ank_2   4 AakngnlelvklLl...egadpn..k.ngktaLhyAakngnleivklLleh......ad..ndgrtpLhyAarsghleivklLlekga 77 
                 A++  + ++++ Ll   +   +   k + +  L +Aa +g++eiv++Ll+        d    g+  L  A+r+++ ++v++L++ g+
  CCE28647.1 254 AVLGRHKHILRELLlpeY--GLAssKvEFLICL-IAAARGDVEIVQMLLNVmegeklSDfrGLGQEMLWEAIRHDRKDVVQMLFDAGC 338
                 455557799999987443..3322122223444.56666889*******94445566334366*********************8875 PP

  == domain 3  score: 29.1 bits;  conditional E-value: 3.7e-10
       Ank_2  29 aLhyAakngnleivklLleh.....ad...ndgrtpLhyAarsghleivklLlekgadi 79 
                 +L++Aa  g+++++++Ll+      ++   ++g++p   Aa+sg++e+v+lLle gad+
  CCE28647.1 355 PLQWAAFLGKIDMMRFLLDRgadihLNglgRTGHSPVEGAAKSGQEEAVDLLLELGADP 413
                 89****************95545554466799*********************99**97 PP

  == domain 4  score: 22.4 bits;  conditional E-value: 4.7e-08
       Ank_2   4 AakngnlelvklLl.egadpnkngktaLhyAakngnleivklLleh....ad....ndgrtpLhyAarsghleivklLlekgadin 80 
                 Aak+g+ e+v+lLl  gadp    + aL +A+k+ +  i kl l+     +d    ++gr ++ +A+  ++l+ + lL+e+g+++n
  CCE28647.1 394 AAKSGQEEAVDLLLeLGADP----LLALRIAVKESQPRITKLVLDRfpdlLDrddgQEGRLAMWHAVTRKNLRNITLLVERGVSLN 475
                 8999999*******999998....7*******************96777844557888*********99***********999887 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.6   1.7e+04      12      22 ..     153     163 ..     149     166 .. 0.60
   2 !    8.5   0.0     0.001       3.1       4      26 ..     184     206 ..     182     226 .. 0.82
   3 ?   -0.3   0.0      0.59   1.8e+03      37      55 .]     249     267 ..     241     267 .. 0.89
   4 !    6.6   0.0    0.0041        12      40      55 .]     284     299 ..     273     299 .. 0.91
   5 ?    4.2   0.0     0.022        67       5      33 ..     318     346 ..     314     353 .. 0.80
   6 !   12.7   0.0   4.9e-05      0.15       3      37 ..     354     386 ..     352     391 .. 0.87
   7 !   13.3   0.0   3.3e-05     0.098       8      48 ..     394     461 ..     387     468 .. 0.64
   8 ?    4.4   0.0      0.02        60       3      28 ..     450     475 ..     448     479 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.6
       Ank_4  12 grlelvrlLle 22 
                 g+l lv++Lle
  CCE28647.1 153 GDLHLVKSLLE 163
                 44556666665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.001
       Ank_4   4 aLhyaaisgrlelvrlLlekgad 26 
                 +L  aa  g l++vr+Llekga 
  CCE28647.1 184 PLVIAAGLGYLDIVRYLLEKGAR 206
                 6888999*************997 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.59
       Ank_4  37 talhiAakrgnveilklLl 55 
                 +al  A+++ +++il+ Ll
  CCE28647.1 249 SALRAAVLGRHKHILRELL 267
                 59999*********99876 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0041
       Ank_4  40 hiAakrgnveilklLl 55 
                  iAa rg+vei+++Ll
  CCE28647.1 284 LIAAARGDVEIVQMLL 299
                 68*************8 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.022
       Ank_4   5 LhyaaisgrlelvrlLlekg.adinaqdnr 33 
                 L  a+ + r ++v+ L++ g +d na  + 
  CCE28647.1 318 LWEAIRHDRKDVVQMLFDAGcVDANAF-PY 346
                 567889999999999999998888887.65 PP

  == domain 6  score: 12.7 bits;  conditional E-value: 4.9e-05
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGet 37 
                 ++L +aa  g++++ r+Ll++gadi+   n+ G+t
  CCE28647.1 354 GPLQWAAFLGKIDMMRFLLDRGADIHL--NGLGRT 386
                 6899********************976..666665 PP

  == domain 7  score: 13.3 bits;  conditional E-value: 3.3e-05
       Ank_4   8 aaisgrlelvrlLlekgad..........................inaqdnrs.GetalhiAakrgnv 48 
                 aa+sg++e+v+lLle gad                          +  +d+++ G+ a+++A+ r n+
  CCE28647.1 394 AAKSGQEEAVDLLLELGADpllalriavkesqpritklvldrfpdLLDRDDGQeGRLAMWHAVTRKNL 461
                 88999999999999999996666666666666666666655552222223322555677777666665 PP

  == domain 8  score: 4.4 bits;  conditional E-value: 0.02
       Ank_4   3 taLhyaaisgrlelvrlLlekgadin 28 
                  a+ +a+   +l+++ lL+e+g+++n
  CCE28647.1 450 LAMWHAVTRKNLRNITLLVERGVSLN 475
                 577889999**************988 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00055       1.6       5      27 ..     184     205 ..     183     208 .. 0.93
   2 ?   -1.7   0.0       2.4   7.2e+03       8      23 ..     252     268 ..     249     272 .. 0.75
   3 ?    4.3   0.0     0.027        82       8      23 ..     285     300 ..     284     304 .. 0.91
   4 !   10.0   0.0   0.00037       1.1       2      30 ..     314     342 ..     313     343 .. 0.90
   5 !   16.0   0.0   4.2e-06     0.013       5      30 ..     355     379 ..     353     380 .. 0.95
   6 !    6.9   0.0     0.004        12       9      29 ..     394     413 ..     387     415 .. 0.93
   7 ?    0.5   0.0      0.46   1.4e+03       2      30 ..     448     475 ..     447     476 .. 0.80
   8 ?   -2.3   0.0       3.9   1.2e+04       9      27 ..     488     506 ..     487     507 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00055
       Ank_3   5 pLhlAarsgnleivkfLlenkga 27 
                 pL +Aa  g l+iv++Lle kga
  CCE28647.1 184 PLVIAAGLGYLDIVRYLLE-KGA 205
                 899****************.887 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.4
       Ank_3   8 lAarsgnle.ivkfLle 23 
                 +Aa  g+++ i++ Ll 
  CCE28647.1 252 RAAVLGRHKhILRELLL 268
                 57777777669999986 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.027
       Ank_3   8 lAarsgnleivkfLle 23 
                 +Aa  g++eiv++Ll+
  CCE28647.1 285 IAAARGDVEIVQMLLN 300
                 79************98 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00037
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+ +L +A+r+++ ++v++L++   +d n
  CCE28647.1 314 GQEMLWEAIRHDRKDVVQMLFDAGCVDAN 342
                 7889******************8888877 PP

  == domain 5  score: 16.0 bits;  conditional E-value: 4.2e-06
       Ank_3   5 pLhlAarsgnleivkfLlenkgadvn 30 
                 pL +Aa  g++++++fLl+ +gad++
  CCE28647.1 355 PLQWAAFLGKIDMMRFLLD-RGADIH 379
                 9******************.****97 PP

  == domain 6  score: 6.9 bits;  conditional E-value: 0.004
       Ank_3   9 AarsgnleivkfLlenkgadv 29 
                 Aa+sg  e v++Lle  gad+
  CCE28647.1 394 AAKSGQEEAVDLLLE-LGADP 413
                 899************.****8 PP

  == domain 7  score: 0.5 bits;  conditional E-value: 0.46
       Ank_3   2 GetpLhlAarsgnl.eivkfLlenkgadvn 30 
                 G+ ++ +A+   nl + + +L+e +g+ +n
  CCE28647.1 448 GRLAMWHAVTRKNLrN-ITLLVE-RGVSLN 475
                 7888888888888856.999999.999988 PP

  == domain 8  score: -2.3 bits;  conditional E-value: 3.9
       Ank_3   9 Aarsgnle.ivkfLlenkga 27 
                 Aa+ g+   +v+ Ll   ga
  CCE28647.1 488 AAKDGKGQwVVDHLLS-LGA 506
                 7888888779999*99.776 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0     4e-05      0.12      18      40 ..     183     205 ..     172     216 .. 0.85
   2 ?    5.1   0.0      0.01        30      22      46 ..     285     309 ..     284     314 .. 0.74
   3 ?    1.3   0.0      0.15   4.5e+02      18      45 ..     316     339 ..     305     343 .. 0.74
   4 !    6.8   0.0    0.0029       8.6      20      44 ..     356     380 ..     353     394 .. 0.85
   5 ?    2.4   0.0     0.072   2.2e+02       1      42 [.     371     413 ..     371     415 .. 0.92
   6 ?   -0.9   0.0      0.78   2.3e+03      11      43 ..     443     475 ..     433     483 .. 0.74
   7 ?   -0.4   0.0      0.54   1.6e+03       1      43 [.     467     512 ..     466     521 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4e-05
       Ank_5  18 tpLhvAakygaadvvrlLlarga 40 
                  pL +Aa  g++d+vr+Ll+ ga
  CCE28647.1 183 RPLVIAAGLGYLDIVRYLLEKGA 205
                 79*****************7665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.01
       Ank_5  22 vAakygaadvvrlLlargadlnltd 46 
                 +Aa +g  ++v++Ll+  +  +l d
  CCE28647.1 285 IAAARGDVEIVQMLLNVMEGEKLSD 309
                 6999***********4444445555 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.15
       Ank_5  18 tpLhvAakygaadvvrlLlargadlnlt 45 
                 + L  A+++ + dvv++L+    d+++ 
  CCE28647.1 316 EMLWEAIRHDRKDVVQMLF----DAGCV 339
                 555559999999*******....55444 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0029
       Ank_5  20 LhvAakygaadvvrlLlargadlnl 44 
                 L +Aa  g  d++r+Ll+rgad+ l
  CCE28647.1 356 LQWAAFLGKIDMMRFLLDRGADIHL 380
                 5567777999*********999876 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.072
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadl 42 
                 Ll++g ++ +n l + g +p   Aak g  + v lLl+ gad+
  CCE28647.1 371 LLDRGaDIHLNGLGRTGHSPVEGAAKSGQEEAVDLLLELGADP 413
                 8999*999999999999999999***9999*******999997 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.78
       Ank_5  11 rldgggntpLhvAakygaadvvrlLlargadln 43 
                 +  ++g +++ +A+ + +++ + lL++rg++ln
  CCE28647.1 443 DDGQEGRLAMWHAVTRKNLRNITLLVERGVSLN 475
                 444556688888888888888888888888877 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 0.54
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl....argadln 43 
                 L+e+g +++n+  +++ ++  +Aak g  ++v   l    a+  + +
  CCE28647.1 467 LVERG-VSLNDGYKESWEIPVNAAKDGKGQWVVDHLlslgAHDTSED 512
                 66777.67777666666777889998888888877765555555555 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.9   5.8e+03       9      22 ..     149     162 ..     115     167 .. 0.71
   2 ?    5.0   0.0     0.012        36       5      25 ..     184     205 ..     184     215 .. 0.81
   3 ?   -1.2   0.1       1.2   3.5e+03       8      24 ..     253     272 ..     249     276 .. 0.65
   4 ?    3.0   0.0     0.052   1.6e+02       8      22 ..     286     299 ..     281     307 .. 0.80
   5 ?    0.8   0.0      0.25   7.6e+02       9      29 ..     321     341 ..     317     343 .. 0.73
   6 !    7.1   0.0    0.0027         8       5      28 ..     355     379 ..     353     382 .. 0.90
   7 ?    2.0   0.0      0.11   3.3e+02       9      27 ..     394     413 ..     387     419 .. 0.77
   8 ?   -2.1   0.0       2.1   6.4e+03       8      27 ..     419     439 ..     414     444 .. 0.66
   9 ?    0.7   0.0      0.29   8.7e+02       8      28 ..     454     475 ..     448     476 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.9
                 HHHHTTHHHHHHHH CS
         Ank   9 AatngkkriiklLL 22 
                 A+t+g+++ +k LL
  CCE28647.1 149 AVTIGDLHLVKSLL 162
                 45777777887777 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.012
                 HHHHHHHHTTHHHHHHHH.TTT CS
         Ank   5 PLHlAatngkkriiklLL.hGA 25 
                 PL +Aa  g ++i+++LL +GA
  CCE28647.1 184 PLVIAAGLGYLDIVRYLLeKGA 205
                 788999888899******9894 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.2
                 HHHHHTTHHHHHHHH...TT CS
         Ank   8 lAatngkkriiklLL...hG 24 
                  A+ + +k+i+++LL   +G
  CCE28647.1 253 AAVLGRHKHILRELLlpeYG 272
                 456667799**976636446 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.052
                 HHHHHTTHHHHHHHH CS
         Ank   8 lAatngkkriiklLL 22 
                  Aa +g+++i+++LL
  CCE28647.1 286 AAA-RGDVEIVQMLL 299
                 455.8*********9 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.25
                 HHHHTTHHHHHHHH.TTTSTTC CS
         Ank   9 AatngkkriiklLL.hGAnlna 29 
                 A++ + k+++++L   G +++a
  CCE28647.1 321 AIRHDRKDVVQMLFdAG-CVDA 341
                 8888999****886447.5554 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0027
                 HHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   5 PLHlAatngkkriiklLL.hGAnln 28 
                 PL +Aa  gk ++ ++LL +GA+++
  CCE28647.1 355 PLQWAAFLGKIDMMRFLLdRGADIH 379
                 8999**999999******779**86 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.11
                 HHHHTTHHHHHHHH.TTTST CS
         Ank   9 AatngkkriiklLL.hGAnl 27 
                 Aa  g+++ + lLL  GA++
  CCE28647.1 394 AAKSGQEEAVDLLLeLGADP 413
                 456677999****966***7 PP

  == domain 8  score: -2.1 bits;  conditional E-value: 2.1
                 HHHHHTTHHHHHHHHTT.TST CS
         Ank   8 lAatngkkriiklLLhG.Anl 27 
                 +A+ + ++ri+kl L++  +l
  CCE28647.1 419 IAVKESQPRITKLVLDRfPDL 439
                 677777799999756654454 PP

  == domain 9  score: 0.7 bits;  conditional E-value: 0.29
                 HHHHHTTHHHHHHHH.TTTSTT CS
         Ank   8 lAatngkkriiklLL.hGAnln 28 
                  A+t++++r i lL+ +G +ln
  CCE28647.1 454 HAVTRKNLRNITLLVeRGVSLN 475
                 4789999999****98898887 PP

>> DUF327  Protein of unknown function (DUF327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00013      0.39      93     132 ..      81     122 ..      66     124 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
                 ---HHHHHHHHHHHHHHHHHHHHHHH..HTTSTTCHHHHHHH CS
      DUF327  93 drkgrsrvykivkeiDekldeLteel..lkeekealdilaki 132
                 ++   ++ +  ++ +++kld Lt el  ++ ek++l+++++i
  CCE28647.1  81 NLAATQDLLVAIDSVNRKLDTLTGELddMSREKRHLAVAETI 122
                 4455889999***************9999*********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3717.13
//
Query:       CCE28648.1  [L=373]
Description: uncharacterized protein CPUR_02336 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2714.84
//
Query:       CCE28649.1  [L=243]
Description: uncharacterized protein CPUR_02337 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       171  (0.00953762); expected 358.6 (0.02)
Passed bias filter:                      133  (0.00741815); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1897.82
//
Query:       CCE28650.1  [L=178]
Description: uncharacterized protein CPUR_02338 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-13   50.3   8.0      4e-13   49.6   8.0    1.3  1  MARVEL           Membrane-associating domain
  ------ inclusion threshold ------
       0.24   11.5   2.3        3.2    7.9   0.2    2.3  2  Phage_holin_3_5  Bacteriophage holin Hol, superfamily III


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   8.0   4.5e-17     4e-13      11     143 ..      15     136 ..       3     137 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 4.5e-17
      MARVEL  11 ilqlvfaiiilgliaslia.kldqllgspssalnfavfvavfsfly.alfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrdisca 107
                 i+ ++ aii+ g i+ +i+ + ++   + ++++ +   +av++fl+ +++++++ ++   +      +  ++ +d+++++lw++afi+ a+ + +  c+
  CCE28650.1  15 IVVWISAIIVTGVISWMIKvHNHSSWSDHRTKILYEEIIAVITFLTwTVVIILPLVG---H-----YRGHLWPADLIFSFLWFAAFIFSAQDWAGDRCS 105
                 5559**************998888999999****************99999999886...3.....34556779*********************8885 PP

      MARVEL 108 fesnqysasltvrcgqaqaavafgflavllfaasav 143
                      + +   ++cg+  a +af+fla+++ +++++
  CCE28650.1 106 -----KGGPVEGHCGRKRAVMAFSFLAFFCLMVNVF 136
                 .....44667889*********************98 PP

>> Phage_holin_3_5  Bacteriophage holin Hol, superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2    0.0081        73      35      64 ..       4      33 ..       1      43 [. 0.83
   2 ?    7.9   0.2   0.00036       3.2      11      36 ..      58      84 ..      48     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0081
  Phage_holin_3_5 35 aglsgwallrrlllrsgasvvcglavilll 64
                     a +  wa++ ++++   a +v g+   ++ 
       CCE28650.1  4 APMRIWAMVNHIVVWISAIIVTGVISWMIK 33
                     66778******************9887765 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00036
  Phage_holin_3_5 11 mplw.llillallggvsgemwradkag 36
                     +  w ++i+l l+g   g +w ad   
       CCE28650.1 58 FLTWtVVIILPLVGHYRGHLWPADLIF 84
                     445537899**************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1289.14
//
Query:       CCE28651.1  [L=176]
Description: uncharacterized protein CPUR_02339 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-06   27.9  12.5      3e-06   27.3  12.5    1.2  1  MARVEL          Membrane-associating domain
  ------ inclusion threshold ------
      0.037   13.4   0.0      0.048   13.0   0.0    1.1  1  Luciferase_cat  Luciferase catalytic domain


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3  12.5   3.4e-10     3e-06       6     140 ..      11     135 ..       7     138 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 3.4e-10
      MARVEL   6 lgilrilqlvfaiiilgliasliakldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrdi 104
                  ++lr+lq++ a+i+ g++a++i  + +  +++ ++  ++  +a++s+l+++++l++       ++ +    id+++++l++ ++   f +  + ++  
  CCE28651.1  11 IVVLRVLQFASAAIVTGITAYFI-SQSDTTTWNLGRFIYSQLIAGISLLAIFATLLP------SVDAFVQIPIDIALSLLWWGVFGLLFNFTQYPCGW- 101
                 579********************.6667999**************************......77889988899999999888887777777777777. PP

      MARVEL 105 scafe..snqysasltvrcgqaqaavafgflavllfaa 140
                        +++  + + + c +  a++af+    +lf++
  CCE28651.1 102 ----VfeWMNIAPPYEPQCAKFDASTAFSLAGAILFMV 135
                 ....4569***********************9999986 PP

>> Luciferase_cat  Luciferase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.4e-06     0.048     116     174 ..       1      61 [.       1      70 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.4e-06
  Luciferase_cat 116 ladtdhhktggmylrinqygdvctvdasvakfara..krtwksghyfyeplvsggnllgvw 174
                     +a+t   + g + lr+ q+   + v    a f       tw+ g ++y  l++g  ll ++
      CCE28651.1   1 MAQTTILRMGIVVLRVLQFASAAIVTGITAYFISQsdTTTWNLGRFIYSQLIAGISLLAIF 61 
                     68888889999***************99999976412578******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1409.79
//
Query:       CCE28652.1  [L=744]
Description: uncharacterized protein CPUR_02340 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   18.8   2.7     0.0023   17.9   2.7    1.5  1  zf-CCHC    Zinc knuckle
  ------ inclusion threshold ------
      0.075   12.9   1.2       0.15   11.9   1.2    1.4  1  zf-CCHC_2  Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   2.7   2.6e-07    0.0023       2      17 ..     386     401 ..     385     402 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.6e-07
                 CTSSSSSSSSTTTTST CS
     zf-CCHC   2 kCynCGepGHiardCp 17 
                 +C++CG+ GH+  +C+
  CCE28652.1 386 ACFRCGGAGHYVANCT 401
                 7**************8 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.2   1.7e-05      0.15       6      19 ..     387     400 ..     386     400 .. 0.97

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
   zf-CCHC_2   6 ChiCgkkGHyIqdC 19 
                 C +Cg  GHy+ +C
  CCE28652.1 387 CFRCGGAGHYVANC 400
                 ***********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5569.83
//
Query:       CCE28653.1  [L=288]
Description: uncharacterized protein CPUR_02341 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.1   0.0         24    4.9   0.0    2.2  2  Stn1_C    Telomere capping C-terminal wHTH


Domain annotation for each model (and alignments):
>> Stn1_C  Telomere capping C-terminal wHTH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0014        24      93     117 ..      77     101 ..      71     104 .. 0.76
   2 ?    4.9   0.0    0.0013        24       4      46 ..     113     155 ..     111     160 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0014
      Stn1_C  93 akqspellksWwidlkseessivhl 117
                 ++  +  l++W++d++s+ + ++  
  CCE28653.1  77 TALLTGELRDWYLDTNSKMRHVLAS 101
                 55566789**********9987654 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0013
      Stn1_C   4 eelkselfadllakLaklglisledasnvidlkpLknlkeYiq 46 
                 + + s++f d ++ L  ++l + +d +++ + +++kn+ ++i+
  CCE28653.1 113 DAVVSSVFCDAIDGLYDAQLAKANDMKDQWKHHSIKNMRAFIN 155
                 677899*******************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2219.33
//
Query:       CCE28654.1  [L=276]
Description: probable nicotinamide mononucleotide adenylyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-28   97.8   0.0    7.8e-28   97.5   0.0    1.1  1  CTP_transf_like  Cytidylyltransferase-like
  ------ inclusion threshold ------
      0.049   13.5   0.0      0.081   12.8   0.0    1.2  1  CdiI_3           CDI immunity proteins


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   8.7e-32   7.8e-28       1     141 [.      36     222 ..      36     224 .. 0.89

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 8.7e-32
                      EEEE--TT--HHHHHHHHHHHHHSSES..EEEEEESSTHCSST.-SCSSTHHHHHHHHHHH.TTCTTEEEEEEESEHH................ CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleed..livgvpsdeppkkk.kkplasaeeRlemlela.kevdevisvdpweltr................ 74 
                      la+G+F pi++ Hlr++ +a+++       +vg   +++++++ kk+la+a++R+em++la ++++++++vdpwe +                 
       CCE28654.1  36 LACGSFSPITFLHLRMFSMARDYAASVgfHVVGGFLSPVSDNYkKKGLAPAHHRVEMCQLAaEKTSNWLTVDPWEANSptyiptarvldhvdye 129
                      79***************************5555555555555527********************************************99999 PP

                      ............HHHHHTTTT....EEEEEEEHHHHHHHHCHH.....HHHHHHHHHHHEEEEEE............HTTCEEEEEEECCTTTC CS
  CTP_transf_like  75 ............evlkklkpd....klylvigadvledfsewk.....eleeilgnvklvvvsrp............ekqanvllkaekrtngi 135
                                                ++l++g d+++++s++      +l++il n+++  v+r+            + ++n++++++ +tn+i
       CCE28654.1 130 inevmggiecadG-------TrkrsRIVLLAGLDLIQTMSTPGvwderDLNHILNNYGVFAVERTgtetgsalanlkQWEHNIHIIRQVITNDI 216
                      9966666654322.......0333568************998899999*****************************99*************** PP

                      SHHHHH CS
  CTP_transf_like 136 Sstkir 141
                      Sstkir
       CCE28654.1 217 SSTKIR 222
                      *****9 PP

>> CdiI_3  CDI immunity proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.1e-06     0.081      17      71 ..     201     257 ..     188     258 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.1e-06
      CdiI_3  17 lvekveelrkkpleeltveDlrllirQeiglellvpl.AlevLke.dpLaegdlYeG 71 
                  + +++ +r++  ++++ + +rll++ ++ +++l+p  +++++ e +   +gd+++G
  CCE28654.1 201 WEHNIHIIRQVITNDISSTKIRLLLKRNMTIDYLIPDdVINYIYEhNLYRDGDIFNG 257
                 566788999**************************9548999866155568999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2120.73
//
Query:       CCE28655.1  [L=601]
Description: PRO1A C6 zink-finger protein PRO1A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-49  167.9   1.8    3.7e-49  167.6   1.8    1.1  1  Fungal_trans_2  Fungal specific transcription factor domain
    3.5e-09   36.6   6.3    8.5e-09   35.4   6.3    1.7  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   1.8   4.1e-53   3.7e-49       2     383 ..     196     600 ..     195     601 .] 0.86

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 4.1e-53
  Fungal_trans_2   2 lldyyldnvapllspvpes..snpfrkvllplalsnkallhallalsafhl.......qskgpkds..lereakrykslalkelqealaelsstl 85 
                     ll+++ld+v p ++p +++   ++ r +ll l+l++k+l+h  lals++h+       +   +  +    ++ +++++ +l+e++  ++e+++  
      CCE28655.1 196 LLMHFLDQVIPAQYPLYRPqpLDGGRGWLLSLLLRSKSLYHGALALSSYHRlisilagARPAC--RalATTRHQHHLESCLREVRCTMQEMTRAN 288
                     89*****************999*****************************998874433333..36699**********************999 PP

  Fungal_trans_2  86 s.rnekykdiLaaiLllcsieissgdvsdwrvhLeaatsliksrggs.........kasssslss......................karfllri 148
                        +  +  +L++++ l++ e   g+++ wr+hL++a ++ +  +           +       +                       +rf+ + 
      CCE28655.1 289 AsFPDFDAGTLISVIQLVFSEALTGESDAWRMHLRGAIEMYRCAMTGgtkytkqteE-------AlailrssiplegeaaglcedvsSMRFMSSA 376
                     98999***********************************88777776655555551.......35555555666667777777777******** PP

  Fungal_trans_2 149 fayldilssttlgrgpsfpseeyekllenkkeesdsgldplmGcsnslilliseisrLarekrsarkd.seleplsileeaseleqrllswkprs 242
                     +++ldi++s t g +p + s + ++l ++    s ++l+++mGc+n+++  +++i++L++++++++ + s +e  +i++ +++  q++l + ++ 
      CCE28655.1 377 VLWLDIVGSVTEGAEPRLLSMHGQDLGTG----SGIRLEEVMGCQNQVMVQMARIAALQATRKTHEVSaSAPEVADIQNALHCVHQDALALMQE- 466
                     *****************************....***********************************66677777777777777777633333. PP

  Fungal_trans_2 243 sdlepdldeterasslskdltelfrlaaliylyrlvlglppsspevqelvkkllellellpsspvaiasLlWplFiaGceavdeddRdfvrrrle 337
                       +ep ++ + r+ +   ++  +fr+aa iyl+   +g+ +  + +q+l +++++ l++  + ++  ++L+ plFi+Gc+a++ d++ ++r+ + 
      CCE28655.1 467 -EHEP-QRKSCRTIA---TVSIIFRHAAGIYLCLITNGFRDY-DTLQQLAADAMAFLRTEVTADL-TTGLVCPLFIIGCAATTTDEQALFRTTFS 554
                     .2333.333333333...33799*****************99.99*****************999.***************************** PP

  Fungal_trans_2 338 ele.qsrl.gnvrrarqvleevWrrrddgeekidWrdvmekkgwelll 383
                     + e  + l ++  r++ +lee+Wr+r +++   +W+ v+ ++ +++ll
      CCE28655.1 555 SHEfLNPLfKHRPRLLPILEEIWRERWKND-AYSWDNVV-RLSRDILL 600
                     ***967667******************765.699*****.99999987 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   6.3   9.5e-13   8.5e-09       2      33 ..      10      41 ..       9      47 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 9.5e-13
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfy 33
                +C++Cr +K KCd+++P+Cs+C  l+ +C  y
  CCE28655.1 10 GCWTCRLRKKKCDEGRPQCSSCDALQITCHGY 41
                7****************************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4488.16
//
Query:       CCE28656.1  [L=425]
Description: uncharacterized protein CPUR_02344 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-30  104.4   3.5    8.1e-30  104.0   3.5    1.2  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.1e-10   41.9   1.1    1.1e-07   32.3   0.4    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00011   21.5   0.8      0.013   14.6   0.2    2.3  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
  ------ inclusion threshold ------
      0.023   14.1   0.0      0.036   13.5   0.0    1.2  1  Bac_luciferase  Luciferase-like monooxygenase
       0.56   10.2   2.6        8.7    6.3   0.0    3.4  4  NAD_binding_9   FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   3.5   2.3e-33   8.1e-30       2     284 ..      50     344 ..      49     367 .. 0.83

  Alignments for each domain:
  == domain 1  score: 104.0 bits;  conditional E-value: 2.3e-33
                  SEEEE--SHHHHHHHHHHHH........HTS-EEEEETTHCHHHCSHHHHC.HHHHHHHHHHHHH...HHHHCHHHH.CCCCHCCTCEEEEESCEEEE CS
                  xxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx...xxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq........agakvtlvelegtclnggcllsk.allgvaedaeias...evvkklnqg.ielllgeevvkidpgkkkvk 86 
                  ++v++Gg + ++ +a+++ q        a +kvtlv +++ ++++    +  ++ g  +d++i++   e + k++++ +++llg +++++d + k+++
   CCE28656.1  50 NIVIVGGSFSAMGTAHRILQkaaktpgiADVKVTLV-SRDSHFYWNLAATRaTVQGKISDEQIFQsipEGFAKYGSDkFQFLLG-SATGVDVQGKNLT 145
                  69***************999999999999*******.7777777777776625666666666666***8888999998******.******9999*** PP

                  ETEEEC...TCEEEEEESEEEE---EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-T....SEEEEES-SHHHHHHHHHHHHH.T-..EEEEEES CS
                  xxxxxx...xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx.xx..xxxxxxx RF
  Pyr_redox_2  87 lekkke...gdeekiaydklvlAtGssprdl.gipGvaenvgklvrtldsaealklkllp....krivvvGgGyiGvElAaalakl.gk..evtlvea 173
                  + ++++    +e ++ay+ l+lAtG +++   + +        +  t d++eal++ + +    k ivv G+G++GvElA+++a+  g+  +v l+  
   CCE28656.1 146 VAARTTgggTEEISVAYNVLILATGTHTKVDsPYKSR------G-TTEDTKEALHQMQARvkdaKTIVVAGAGPTGVELAGEIADGyGSskKVILLTG 236
                  *9988888777788999********755443255544......2.334455555554444555678****************7664466547****** PP

                  SSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.EEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBES.ST CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
  Pyr_redox_2 174 rdrllraldkelsaaleealekeGvevklgtsvkeidgnge.klevvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtn.vp 269
                     +l+a+ +++   ++++l   Gve+++ + v++ +  ++ k evv  +g+++ +d  +   Gv p+++ l  ++   lderg+i v+++l ++  +
   CCE28656.1 237 SASVLSAYTSRMITNATKYLGILGVEIRTSSIVETTNVLPDgKTEVVFATGQKLTTDVYIPTYGVVPNSSYL-PADM--LDERGFIDVNDYLVVKgAK 331
                  *********************************999988886778************************999.4444..489**********9988** PP

                  TEEE-GGGCTECCSS CS
                  xxxxxxxxxxxxxxx RF
  Pyr_redox_2 270 giyaiGDvaggkggp 284
                  ++yaiG v      p
   CCE28656.1 332 DVYAIGEVS--NCEP 344
                  ********9..3333 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0012       4.5       1      35 [.      50      92 ..      50     111 .. 0.77
   2 !   32.3   0.4     3e-11   1.1e-07       2      78 ..     205     284 ..     204     289 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0012
                EEEEECSSHHHHHHHHHHHHTT........SEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg........kkVtvversdkll 35
                ++v+vGg+++++  A  + + +         kVt+v r +++ 
  CCE28656.1 50 NIVIVGGSFSAMGTAHRILQKAaktpgiadVKVTLVSRDSHFY 92
                59*************9985555466677778999999998876 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 3e-11
                 EEEECSSHHHHHHHHHHHH.TT..SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalae.lg..kkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgvesvkl 78 
                 +vv G+G +g+ElAg++a+ +g  kkV ++  s  +l+++   + ++ +++l  +g+e+++++ ve  +  +dg ++v++
  CCE28656.1 205 IVVAGAGPTGVELAGEIADgYGssKKVILLTGSASVLSAYTSRMITNATKYLGILGVEIRTSSIVETTNVLPDGKTEVVF 284
                 8****************99899878********************************************99999888987 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0035        13     188     228 ..      45      91 ..      30     101 .. 0.80
   2 !   14.6   0.2   3.7e-06     0.013     131     235 ..     142     247 ..     133     255 .. 0.72
   3 ?   -3.9   0.0       1.6   5.8e+03     144     181 ..     353     389 ..     348     392 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0035
  K_oxygenase 188 llakkriaVvGsGqSaaeifedllrrqkk......velklvtrseal 228
                  +++  +i++vG+  Sa   ++ +l++++k      v+++lv+r +++
   CCE28656.1  45 KNTMVNIVIVGGSFSAMGTAHRILQKAAKtpgiadVKVTLVSRDSHF 91 
                  667789************99999999554456666999999999877 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.7e-06
  K_oxygenase 131 elltveskd.aegeeeelearn.lvlgvGtepkiPevleklegkervvHsseylerkee.llakkriaVvGsGqSaaeifedllrr.qkkvelklvtr 224
                  + ltv  ++   g+ee   a n l+l++Gt+ k+ + +++  +      ++e+l+++++  +++k+i+V G+G ++ e++ ++++   +++++ l+t 
   CCE28656.1 142 KNLTVAARTtGGGTEEISVAYNvLILATGTHTKVDSPYKSRGT---TEDTKEALHQMQArVKDAKTIVVAGAGPTGVELAGEIADGyGSSKKVILLTG 236
                  46888887755667777777772578********999997654...444455555544337899********************99444588888887 PP

  K_oxygenase 225 sealeplddsp 235
                  s+++  +  s 
   CCE28656.1 237 SASVLSAYTSR 247
                  77776665555 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 1.6
  K_oxygenase 144 eeelearnlvlgvGtepkiPevleklegkervvHssey 181
                  ++++ a+n +l   ++p++P   ++++    v+ s++y
   CCE28656.1 353 QSKHMANNAILIASGKPTLPYKKNSVK-MIGVCVSKNY 389
                  556777777777788899998888777.4666666666 PP

>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     1e-05     0.036     156     189 ..     195     225 ..     168     230 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1e-05
  Bac_luciferase 156 alllprpgqgpiPvyvaaaspaglelaarhadgl 189
                     ++ + +++     ++va+a+p g+ela+++adg+
      CCE28656.1 195 MQARVKDA---KTIVVAGAGPTGVELAGEIADGY 225
                     34444443...339*******************9 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0024       8.7       1      35 [.      52      90 ..      52     107 .. 0.77
   2 ?   -0.4   0.0      0.28     1e+03     119     155 ..     129     171 ..     109     172 .. 0.63
   3 ?    0.5   0.2      0.15   5.2e+02       1      18 [.     206     223 ..     206     235 .. 0.81
   4 ?   -0.6   0.0      0.33   1.2e+03      95     148 ..     240     294 ..     236     301 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0024
  NAD_binding_9  1 aivGaGprGlavlerLlara...kkkspleitlfdp.se 35
                   +ivG+ ++++ ++ r+l++a   +  +++++tl+ + s+
     CCE28656.1 52 VIVGGSFSAMGTAHRILQKAaktPGIADVKVTLVSRdSH 90
                   79*****************97433336688998877444 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.28
  NAD_binding_9 119 vhraevvdleeradg..qavlladgas....laadaVvLAlGh 155
                    ++ ++++ ++ ++++  +a ++++g +    +a++ ++LA+G 
     CCE28656.1 129 FLLGSATGVDVQGKNltVAARTTGGGTeeisVAYNVLILATGT 171
                    5555566555555552145556655433444788999999996 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.15
  NAD_binding_9   1 aivGaGprGlavlerLla 18 
                    ++ GaGp+G+ ++ ++++
     CCE28656.1 206 VVAGAGPTGVELAGEIAD 223
                    578*******99988775 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.33
  NAD_binding_9  95 lyGrYlrdlfeellarlpegvtvevhraevvdlee.radgq.avlladgaslaada 148
                    ++++Y + +++++++ l   + ve+ ++++v+ ++  +dg  +v+ a+g++l+ d 
     CCE28656.1 240 VLSAYTSRMITNATKYLG-ILGVEIRTSSIVETTNvLPDGKtEVVFATGQKLTTDV 294
                    677888888888888774.5778888888777665345664489999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3030.54
//
Query:       CCE28657.1  [L=608]
Description: related to laccase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-40  137.0   3.3      2e-39  134.3   0.3    2.7  2  Cu-oxidase_3  Multicopper oxidase
    9.3e-34  116.1  15.4    1.3e-27   96.2   8.1    3.5  2  Cu-oxidase_2  Multicopper oxidase
    6.3e-25   88.1   0.0    1.4e-24   87.0   0.0    1.6  1  Cu-oxidase    Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.3   0.3   3.3e-43     2e-39       3     118 ..      78     194 ..      76     195 .. 0.94
   2 ?    2.4   0.2     0.025   1.5e+02      73     109 ..     528     563 ..     486     569 .. 0.74

  Alignments for each domain:
  == domain 1  score: 134.3 bits;  conditional E-value: 3.3e-43
                   EEEEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-S...SS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEE CS
  Cu-oxidase_3   3 tektvsplggterevitvNgqfpgptievregdtvvvnvtNkl...dentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwY 96 
                   t++  sp+g+  +++i++N+qfpgp ie+++gd ++v+vtN++    ++t+ihwhGl q++t+w+DGvpgv+qcpi+pg++ftyrf++++  gt++Y
    CCE28657.1  78 TRTFLSPDGYR-KPMIAINNQFPGPLIEANWGDWIEVSVTNSIqgpADGTAIHWHGLLQHETPWYDGVPGVSQCPIAPGSNFTYRFQADH-VGTTFY 172
                   56667888888.*******************************887788*****************************************.****** PP

                   EE--TTHHHTT-EEEEEEE-HH CS
  Cu-oxidase_3  97 hshlslqqaaGlaGaiiiedke 118
                   hsh+s+q  aG +G+++ + ++
    CCE28657.1 173 HSHYSAQISAGAFGPMVFHGPK 194
                   *******99********99875 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.025
                   G-B-TT-EEEEEEE--S-SEEEEEEE--TTHHHTT-E CS
  Cu-oxidase_3  73 cpiqpgesftyrftvkqqagtlwYhshlslqqaaGla 109
                   + ++p+ + + +f+ ++  g   +h h++++  aGl 
    CCE28657.1 528 HILPPNGHLVMQFETDN-PGIWPFHCHVAWHVSAGLL 563
                   34689999999***999.99999*******9889885 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.7   4.4e-08   0.00026      26     131 ..      96     188 ..      74     191 .. 0.77
   2 !   96.2   8.1   2.2e-31   1.3e-27      27     135 ..     452     570 ..     406     572 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.4e-08
                   CCTTTSSEEEEEETTEEEEEEEEE-SSS...-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES.S-EEEEEEESS CS
  Cu-oxidase_2  26 eefsentnvitlpkgevveiviqnntkl...pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkadnpGvwllHCHi 119
                   ++f+   + i+++ g+++e+ ++n+ ++      +H+HG     l++++            ++  +      + pg+++++rf+ad+ G  ++H+H 
    CCE28657.1  96 NQFP--GPLIEANWGDWIEVSVTNSIQGpadGTAIHWHGL----LQHETPW----------YDGVPGVSQCPIAPGSNFTYRFQADHVGTTFYHSHY 176
                   4455..77899999**********9999655489*****8....6444444..........23333335567889********************** PP

                   HHHHHTT-EEEE CS
  Cu-oxidase_2 120 lwHldqGmalqf 131
                       ++G  + +
    CCE28657.1 177 SAQISAGAFGPM 188
                   999998877766 PP

  == domain 2  score: 96.2 bits;  conditional E-value: 2.2e-31
                   CTT..TSSEEEEEETTEEEEEEEEE-SSS-...........EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES.S- CS
  Cu-oxidase_2  27 efs..entnvitlpkgevveiviqnntklp...........HPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkadnp 110
                    ++  ++ nv+++ +  vv+++ +n+   p           HP+H+HGhd+qvl++g g +   d k +n +np rrdt  +pp+g+++++f++dnp
    CCE28657.1 452 SYPsnPEWNVVNTGNARVVRVIWENQKFDPknphlynltfaHPMHMHGHDWQVLASGFGAW---DGKVTNAQNPLRRDTHILPPNGHLVMQFETDNP 545
                   33333788999999999999999998888455677788888*******************5...7779999************************** PP

                   EEEEEEESSHHHHHTT-EEEEEEEC CS
  Cu-oxidase_2 111 GvwllHCHilwHldqGmalqfvvrp 135
                   G w +HCH++wH+++G+ ++++++p
    CCE28657.1 546 GIWPFHCHVAWHVSAGLLVNIMEQP 570
                   *********************9986 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   2.3e-28   1.4e-24       4     157 ..     204     364 ..     201     366 .. 0.88

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 2.3e-28
                 EEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......C.....TTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEE CS
  Cu-oxidase   4 vitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladk.....dgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvev 97 
                 +++l+D++h + ++l++    + ++  + p  +d+ lingk++++++l ++      +a   +++++pgk+++lriin++      fs++ H++ V+ +
  CCE28657.1 204 PVLLNDYFHPSYETLVE-GIMGVTGVNRKPAFSDNNLINGKMNYDCSLVKDgtpcvSNAGVSKFKFTPGKKHLLRIINGGSAGLQYFSVDEHEMEVISM 301
                 689******99999999.88888888888******************9996777778899*************************************** PP

                 TCETTSEEEESCEEE-TTEEEEEEEEE...-SS..SEEEEEEEEGSSSCHHHHTTSEEEEEEEES CS
  Cu-oxidase  98 DgvyvepvevdsldIavGqrysvlvta...nqa..pgnYwivasgrsnlieafengtaaailrys 157
                 D+v+++p++++ + ++vGqr++v+v     + +  ++ Y+++a+ + + ++ ++++ ++a + ys
  CCE28657.1 302 DFVPIKPYKTKYITLGVGQRTEVIVRGktdK-KdtSRGYFLRANLS-TICALPRQPRGLAAIYYS 364
                 *************************885442.145999*****755.448888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4405.04
//
Query:       CCE28658.1  [L=337]
Description: related to aldehyde reductase II [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-18   67.2   0.0    2.3e-18   66.6   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.6e-11   43.8   0.0    2.3e-11   43.2   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    1.6e-07   30.8   0.0      0.013   14.7   0.1    2.1  2  NAD_binding_4    Male sterility protein
    2.5e-07   30.4   0.0      4e-07   29.7   0.0    1.4  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    4.8e-06   26.6   0.1    8.6e-06   25.8   0.0    1.5  2  NAD_binding_10   NAD(P)H-binding
    0.00043   19.5   0.0    0.00059   19.1   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0016   18.0   0.1      0.015   14.8   0.1    2.1  2  adh_short        short chain dehydrogenase
     0.0081   16.1   0.0      0.015   15.2   0.0    1.4  1  KR               KR domain
  ------ inclusion threshold ------
      0.012   15.2   0.1      0.022   14.3   0.1    1.5  2  NmrA             NmrA-like family
      0.045   13.8   0.0      0.085   12.9   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
      0.066   12.3   0.0        0.1   11.7   0.0    1.3  1  RmlD_sub_bind    RmlD substrate binding domain
       0.11   11.5   0.0        0.2   10.7   0.0    1.4  1  RELT             Tumour necrosis factor receptor superfamily 


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   1.5e-21   2.3e-18       1     233 [.       4     258 ..       4     264 .. 0.78

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 1.5e-21
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHT CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknl 92 
                 +l+tG++Gf+ s+++k l e+gy+vi+  r ++  + ++++ +        ++  d+  + a++++ k+ + ++v+h A   + ++s   ++++++  +
  CCE28658.1   4 VLLTGGSGFVASHILKILVERGYRVITTVRSED--KAKNIAGAfpdgqvqVVIVPDIAAEGAFDEVAKTAGLEYVLHTASPFHFNWSDA-KTELLDPAI 99 
                 699*********************999998844..44455555678999888888***********************99888888655.5899***** PP

                 HHHHHHHHHHHHH..TCTEEEEEEE.GGGGTSCSSSS.....BSTCSTTS--......--SSHHHHHHHHHHHHHHHHHHHH..T-EEEEEEESEEEST CS
   Epimerase  93 qgtlnlleaarka..gvkrllflsS.sevYGkdaeqp.....keettltgpl......kpnspYaaaKlageklveayaaqy..glnaiilrlfnlyGp 175
                 +gt+ +l+ ++++  +vkr++  sS +++  +++ q      +e++ +   +         s+Y a+K+ +e+ ++++ ++   ++++++l +  ++Gp
  CCE28658.1 100 RGTRSILQSIHAYapQVKRVVITSSlVTMLAPGTIQDsskvfDESDWNPITYeqgltgDKASAYRASKTVAERSAWQFVDEArpQFDITTLCPPLVFGP 198
                 ***********9977888*******866666444432233433333222222333457899******************999778************** PP

                 TS-TTSTTSHHHHHHHHHHT...TS.SSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-S CS
   Epimerase 176 rngegevsrvipalirkile...gk.qevtllgdgtalRdflyveDvaeaillvlehvdagd 233
                   ++ +    i    +++ +   gk +  +l   g  +  f++v+D+a a+++++e  dag 
  CCE28658.1 199 VAHQLRTLEDINTSNQRFVDllqGKwKTEIL--AGLGVNFFVDVRDLAFAHVAAMEIQDAGG 258
                 *666665555555555555444477334444..5677789****************977764 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   1.6e-14   2.3e-11       2     237 ..       6     258 ..       5     272 .. 0.71

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 1.6e-14
   3Beta_HSD   2 vtGgaGFlGralvkeLvrlee..lkevrvlDlrespelleelskvnvkkviegDvtdkdkleeale..gvdvvihlaslvdvagkltedeimkvnvkGT 96 
                 +tGg+GF+ +++ k Lv+++   + +vr+ D++++      +   +v+ vi  D+  +   +e+ +  g + v+h+as       + + e+ +  ++GT
  CCE28658.1   6 LTGGSGFVASHILKILVERGYrvITTVRSEDKAKNIAG--AFPDGQVQVVIVPDIAAEGAFDEVAKtaGLEYVLHTASPFHFNWSDAKTELLDPAIRGT 102
                 79*****************9867789999998876665..8888888889***********99865227899**********999************** PP

   3Beta_HSD  97 rnvlea..cvkagvrvlvYtSsa.evvgpnslgeeilngdEeleyeslhqdaypesKala...EklvlkaNgrtlkngg..rlyTcaLRpagiyGegdk 187
                 r++l++  +   +v+++v tSs+     p + ++     dE+   + ++++ ++  Ka a    k v +   +++ + +  ++    L p  ++G+  +
  CCE28658.1 103 RSILQSihAYAPQVKRVVITSSLvTMLAPGTIQDSSKVFDESDWNPITYEQGLTGDKASAyraSKTVAERSAWQFVDEArpQFDITTLCPPLVFGPVAH 201
                 *****83345679********96255667777776666789888888877777766665311155666666666666665788899999*******999 PP

   3Beta_HSD 188 llvpl..lkqlak......lglalfkigdeevlsdrvYvgNvawahilAaralqdpkk 237
                 +l +l  ++++ +      +g+ + +i     ++ +v v  +a ah+ Aa+++qd   
  CCE28658.1 202 QLRTLedINTSNQrfvdllQGKWKTEILAGLGVNFFVDVRDLAFAHV-AAMEIQDAGG 258
                 87653113333321111111222333333334455677778888887.5566776654 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   8.5e-06     0.013       1      36 [.       6      39 ..       6      44 .. 0.91
   2 !   14.1   0.0   1.3e-05     0.019      87     208 ..      72     197 ..      60     231 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.5e-06
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksges 36
                   lTG++GF+++++l+ L+++    +++  vR++++++
     CCE28658.1  6 LTGGSGFVASHILKILVERGY--RVITTVRSEDKAK 39
                   8****************9987..9******999865 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.3e-05
                    H--EEEE--SS-S.ST..TSSEEHHHHHHHHHHHHHHHTSSS--..-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHH CS
  NAD_binding_4  87 evdviihsaAtvnfde..pykellrvNveGtrevlelakklkkl.kvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqs 179
                     ++ ++h a   +f+      ell++ ++Gtr +l+  ++ + + k ++  S + v+    g++++      e++    + e+   ++ + +Y  s
     CCE28658.1  72 GLEYVLHTASPFHFNWsdAKTELLDPAIRGTRSILQSIHAYAPQvKRVVITS-SLVTMLAPGTIQDSSKVFDESDWNPITYEQGLTGDKASAYRAS 166
                    467899***9998875325667**************9987665514445444.66666666678777777778899999999999999******** PP

                    HHHHHHHHHHHHHH..H---EEEEEE-EEE- CS
  NAD_binding_4 180 KalaEklvrearrr..sglpvvivRpsiitg 208
                    K +aE+   +  ++   ++ ++ + p+ + g
     CCE28658.1 167 KTVAERSAWQFVDEarPQFDITTLCPPLVFG 197
                    *****86655543300345566666666665 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   2.7e-10     4e-07       1     129 [.       5     124 ..       5     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.7e-10
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L TG++Gf+ s++++ L+e+gy+v+ +vr +++  +++i+    d +++      ++  D+  + + +++ + +  + v++ A   h + s  k  
     CCE28658.1   5 LLTGGSGFVASHILKILVERGYRVITTVRSEDK--AKNIAGAFPDGQVQ-----VVIVPDIAAEGAFDEVAKTAGLEYVLHTASPFHFNWSDAK-T 92 
                    78**********************999886665..77999988765443.....47778*******************************9998.5 PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEE CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaSt 129
                    + ++  + Gt  +L+ i a+   + +r++++S+
     CCE28658.1  93 ELLDPAIRGTRSILQSIHAYAP-QVKRVVITSS 124
                    677999***********99964.5667777776 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   5.8e-09   8.6e-06       1     108 [.       8     133 ..       8     211 .. 0.72
   2 ?   -3.3   0.0       4.8   7.2e+03      82      98 ..     248     266 ..     240     280 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 5.8e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH...CTTTCEEEE-.-TT-CCHHHHHHT..T-SEEEES-.......--TCCHHHH..... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele...aeeglevveg.dvtdvedlaealk..gadaVvsal.......ggggkdeeg..... 77 
                     G++G v+++++k l++r g++v   vR+++k+++++    + +++vv + d+  + +  e+ k  g + V+ ++       +    d+++     
      CCE28658.1   8 GGSGFVASHILKILVER-GYRVITTVRSEDKAKNIAgafPDGQVQVVIVpDIAAEGAFDEVAKtaGLEYVLHTAspfhfnwS----DAKTelldp 97 
                     9****************.5*************97763333477777654499999988888874466899999966644331....333334555 PP

                     ....HHHHHHHHHH..CT--EEEEEEETTTTSGCGCH CS
  NAD_binding_10  78 ....aknivdaake..agvkRfvlvsaigvgdevpge 108
                         +++i++   +   +vkR+v+ s++ +   +pg+
      CCE28658.1  98 airgTRSILQSIHAyaPQVKRVVITSSLVTM-LAPGT 133
                     567899999976652278******9997543.33443 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.8
                     HHHHH..HCT--EEEEEEE CS
  NAD_binding_10  82 vdaak..eagvkRfvlvsa 98 
                     v+a++   ag kRf++ ++
      CCE28658.1 248 VAAMEiqDAGGKRFLCSGG 266
                     5555422577888877655 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.9e-07   0.00059       1     128 [.       4     124 ..       4     148 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.9e-07
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      vl+tG++G + s++++ ++++   ++i   r+E k  +i+  +     + +++   v+++ d++ +   +++ ++ + ++v+h+A   h    +
       CCE28658.1   4 VLLTGGSGFVASHILKILVERGY-RVITTVRSEDKAKNIAGAF----PDGQVQ---VVIVPDIAAEGAFDEVAKTAGLEYVLHTASPFHFNWSD 89 
                      899*********99987777665.66777899*******9987....555563...56999*****************************9887 PP

                      HSHHHHHHHHHHHHHHHHHH..HHHTT-SEEEEEEE CS
  Polysacc_synt_2  95 enpleaiktNvlgtenviea..aieagvkkvvliSt 128
                         +e ++  + gt+++++   a + +vk+vv+ S+
       CCE28658.1  90 A-KTELLDPAIRGTRSILQSihAYAPQVKRVVITSS 124
                      6.579*************963366779*****9996 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1     1e-05     0.015       3      71 ..       4      71 ..       2      77 .. 0.90
   2 ?    0.3   0.0      0.27     4e+02     145     189 ..     159     202 ..     154     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1e-05
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealveka 71
                vl tG+s+ +   i k l+++G++v+ + rse+k++++a  + + g+  ++i  D++ + + +++ ++a
  CCE28658.1  4 VLLTGGSGFVASHILKILVERGYRVITTVRSEDKAKNIAGAFPD-GQVQVVIVPDIAAEGAFDEVAKTA 71
                89***************************************998.677888899999999999988877 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.27
                 TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 145 gvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                   +aY AsK   +  + ++ +e +p+   +++++P+lv  ++a++
  CCE28658.1 159 KASAYRASKTVAERSAWQFVDEARPQ-FDITTLCPPLVFGPVAHQ 202
                 5799*****99999999999999986.899999998887666655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     1e-05     0.015       2     140 ..       3     128 ..       2     135 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-05
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                  +l+tGG G ++ ++ + l+e+g r +  + Rs   ++++k+   ++ + +++v +v+ D++ + a  ++ +++      ++ v+h+A  ++ +  + +
  CCE28658.1   3 LVLLTGGSGFVASHILKILVERGYRVI-TTVRS---EDKAKNIAGAFPDGQVQVVIVP-DIAAEGAFDEVAKTAG-----LEYVLHTASPFHFNWSDAK 91 
                 689********************9855.56677...3444556667777788888877.9999888888777765.....8889999987777665444 PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled..esldffvlfSSiagl 140
                      +++l p ++G++ + + ++    +++ +v++SS+ ++
  CCE28658.1  92 -----TELLDPAIRGTRSILQSIHAyaPQVKRVVITSSLVTM 128
                 .....4677888888877766666555677888888887766 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.5e-05     0.022       1      69 [.       4      75 ..       4     121 .. 0.84
   2 ?   -3.0   0.0         3   4.4e+03      16      44 ..     227     257 ..     220     277 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S..-SHHHHHHHHSTTEEE.ES-TT-HHHHHHHHTT-SEEE CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt..kselakslkeaGvelv.kgdlddkeslvealkgvdvvf 69
                +l +G++G  ++++ ++l+++g++v   vR +   ++ a ++ +  v++v   d+  +   +e+ k++ + +
  CCE28658.1  4 VLLTGGSGFVASHILKILVERGYRVITTVRSEdkAKNIAGAFPDGQVQVViVPDIAAEGAFDEVAKTAGLEY 75
                6889**************************986567789999999999998999998888777777775544 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3
                 HHHHHHT-EEEEEES-S..-SHHHHHHHHST CS
        NmrA  16 rallkaghkvralvRdt..kselakslkeaG 44 
                 ++l+  g + ++ vRd+   + +a ++++aG
  CCE28658.1 227 EILAGLGVNFFVDVRDLafAHVAAMEIQDAG 257
                 5555555555666666655455555555554 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.7e-05     0.085      19      70 ..       9      59 ..       2      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.7e-05
                  S-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHH CS
  Shikimate_DH 19 GaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelk 70
                  G G +a+ ++k L+++g++ v+ + R+ ++ak++a  + + +++++ + ++ 
    CCE28658.1  9 GSGFVASHILKILVERGYR-VITTVRSEDKAKNIAGAFPDGQVQVVIVPDIA 59
                  899****************.77788*************88888888777765 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.8e-05       0.1       3      71 ..       4      71 ..       1      86 [. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.8e-05
                   EEEESTTSHHHHHHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHHHHH--SEEE..E------HHHHHHSH CS
  RmlD_sub_bind  3 ilvtGanGqlGseLakqlaeeglevlaltreeldltdaeavaellkeakpdvvv..naAAytavDkaEsee 71
                   +l+tG++G ++s++ k l e+g+ v+++ r+e   ++a+++a ++ + + +vv+  + AA  a D++ +  
     CCE28658.1  4 VLLTGGSGFVASHILKILVERGYRVITTVRSE---DKAKNIAGAFPDGQVQVVIvpDIAAEGAFDEVAKTA 71
                   79*************************97776...467778888888888877644688888888776555 PP

>> RELT  Tumour necrosis factor receptor superfamily member 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014       0.2      12      41 ..       6      38 ..       2      39 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
        RELT 12 lmGLlGvLiChvLk...kKGYrCttekeeeeee 41
                l+G  G++  h+Lk    +GYr+ t   +e+++
  CCE28658.1  6 LTGGSGFVASHILKilvERGYRVITTVRSEDKA 38
                788889999999986668*******99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2301.93
//
Query:       CCE28659.1  [L=405]
Description: probable 2-dehydro-3-deoxyphosphoheptonate aldolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-79  265.7   0.0    4.1e-79  265.3   0.0    1.1  1  DAHP_synth_1  DAHP synthetase I family
  ------ inclusion threshold ------
        0.1   12.6   0.7        0.2   11.7   0.1    1.8  2  SSB           Single-strand binding protein family


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.3   0.0   4.6e-83   4.1e-79      12     270 ..      48     360 ..      30     364 .. 0.96

  Alignments for each domain:
  == domain 1  score: 265.3 bits;  conditional E-value: 4.6e-83
                   CCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH................... CS
  DAHP_synth_1  12 liGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel................... 89 
                    +G d+rl+vi+GPCsi+d ++a+eyA  l++++e + ++l+i+mr+y eKp rstvg+kGl  +pd     r  +++                   
    CCE28659.1  48 SNGSDTRLMVIVGPCSIHDVDEAIEYASLLSNAAELHRHELFIVMRVYVEKP-RSTVGWKGLVHEPDYAAPTRPMSKTlkpfvsssdrssqpelnkg 143
                   68**************************************************.*************9988666555555****************** PP

                   ..............T-EEEEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE....... CS
  DAHP_synth_1  90 ..............glpiatevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv....... 161
                                 glp+ate+l+p  +qy+ d+ +++ iGArttesq+++elas++ +pvg+Kngtd    va d+m +a++++ ++g        
    CCE28659.1 144 vllsrkvmldvaqrGLPVATELLNPLLAQYFDDITSLGVIGARTTESQTHRELASSMPMPVGFKNGTDgslkVATDAMTSASHSHTVVGFddhghma 240
                   ************************************************************************************************* PP

                   ..EE--EEEEEEEEEEST.SSSSSCHCHHHHHHHHHHCTSS.-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT..ESEEEEEBBSSCCC-SST... CS
  DAHP_synth_1 162 ..etkgiilcerglrggk.ktnrdvedvaavkilkeetgkl.pvmvDvsHansrkdykrqkkvlklakaaiaaG..iaGvmiEshlnpgkalsd... 249
                        g+++++++lrgg  ++n+d+e+va++ ++++ +g++  v+vD+sH+ns+kdy++q+ v+++ +++ia G  i+GvmiEs+++ g++++    
    CCE28659.1 241 yhMSAGNPDTFVILRGGSnGPNFDAEHVASAHAELRRAGRTpAVVVDCSHGNSMKDYRNQAAVAACLADQIASGvpIKGVMIESNIHQGRQDVIeda 337
                   *999*****************************9999998889************************************************997789 PP

                   ..GGGGBBCTCBHHHHHHHHHHH CS
  DAHP_synth_1 250 ..gkqalkygksetdacilkelt 270
                     g+   kyg+s+td ci+++ t
    CCE28659.1 338 atGQRRAKYGVSITDGCIGWQET 360
                   9999****************987 PP

>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.2     1e+04      72      96 ..     320     348 ..     318     351 .. 0.57
   2 ?   11.7   0.1   2.2e-05       0.2       4      34 ..     361     391 ..     359     405 .] 0.81

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.2
                 EEEEEEEEE...EEEECTT.SCEEEEEEE CS
         SSB  72 vyveGrlqt...rkyedqe.gqkrystei 96 
                 v++e ++++   + +ed   gq+r ++ +
  CCE28659.1 320 VMIESNIHQgrqDVIEDAAtGQRRAKYGV 348
                 66666665532245566666777776655 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.2e-05
                 EEEEEEESSS-EEEEETTSEEEEEEEEEEEE CS
         SSB   4 vilvGrlgkdpelrqtesGnavarftlatnr 34 
                 ++++G+l++ +++rq + G av++ tl+++ 
  CCE28659.1 361 LTIFGKLAAAVKIRQQKLGMAVVNTTLQVDC 391
                 689*************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2898.57
//
Query:       CCE28660.1  [L=363]
Description: related to naringenin,2-oxoglutarate 3-dioxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-12   47.1   0.0    2.1e-11   44.2   0.0    2.2  3  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
    7.1e-06   26.8   0.0    1.2e-05   26.0   0.0    1.3  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.18   1.6e+03      30      84 ..      38      85 ..      21      95 .. 0.73
   2 ?   -2.8   0.0      0.99   8.9e+03      22      45 ..     141     164 ..     129     180 .. 0.70
   3 !   44.2   0.0   2.3e-15   2.1e-11      23     101 .]     210     300 ..     190     300 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.18
                  SEEEEEEE-TT---EEEETEEEE----TTEEEEEE-HHHHHHTTS-S----EEE- CS
  2OG-FeII_Oxy 30 lltillqddvgglevfkdgkwlrvppvdnslivniGdallflsngryksvlHrVl 84
                   l++l ++   g++      +l+++++d+++i+ +   ++ +s   ++ ++ +V+
    CCE28660.1 38 NLSLLQTCVEDGFF------YLDLTHPDHVTILDCVRDIFDMSEELFR-YPDEVK 85
                  45555555566665......5889999999999998888888888666.777765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.99
                   EEEEEESSSEEEEEEE-TT---EE CS
  2OG-FeII_Oxy  22 lgahtdaslltillqddvgglevf 45 
                   l+a + ++l t++   + ++++++
    CCE28660.1 141 LVAAHQDQLRTLIRFLNRATHTIM 164
                   566677777777777777777774 PP

  == domain 3  score: 44.2 bits;  conditional E-value: 2.3e-15
                   EEEEESSSEEEEEEE-TT---E.....EEE.......TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGS..EEEEEEEE-- CS
  2OG-FeII_Oxy  23 gahtdaslltillqddvgglev.....fkd.......gkwlrvppvdnslivniGdallflsngryksvlHrVlpvneger..Rvsiayfiep 101
                    +htd + lt+ ++d   gl+v       +       ++wl+v p ++  ivn+Gd l ++sng +ks+lHrV pv       R+s+ay  +p
    CCE28660.1 210 TPHTDMGSLTFVFSDV-PGLQVlpvsmS-QkpaecneSDWLYVVPKPGHAIVNVGDCLTMMSNGLLKSALHRVGPVAGCAMpeRYSMAYLARP 300
                   69********999987.9****665540.2456676455***********************************888844456******8765 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.3e-09   1.2e-05      21      93 ..      40     121 ..      24     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.3e-09
      DIOX_N  21 qlreAcrevGffyvvnhgvpe....elidelfeaareFFalPeeeKekl...aksp.sfrGysrlgeektdg.kkldwkesf 93 
                 +l + c e Gffy+  +  ++    + ++++f++++e+F+ P+e+K+ +   + s+ +  Gy++ g++ t++ +++d  es+
  CCE28660.1  40 SLLQTCVEDGFFYLDLTHPDHvtilDCVRDIFDMSEELFRYPDEVKNLFdvdKVSRlKLNGYKPKGRNITSKdGRGDGFESW 121
                 57899*********9988776666699**********************7543344899***********986666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2860.39
//
Query:       CCE28661.1  [L=463]
Description: uncharacterized protein CPUR_02349 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-93  312.7   0.0    4.7e-93  312.5   0.0    1.0  1  Trp_DMAT  Tryptophan dimethylallyltransferase
  ------ inclusion threshold ------
       0.11   12.7   0.0         25    5.1   0.0    2.5  2  DUF5071   Domain of unknown function (DUF5071)


Domain annotation for each model (and alignments):
>> Trp_DMAT  Tryptophan dimethylallyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.5   0.0   5.3e-97   4.7e-93       2     362 ..      31     409 ..      30     411 .. 0.88

  Alignments for each domain:
  == domain 1  score: 312.5 bits;  conditional E-value: 5.3e-97
                 HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTGGGC-S--..ECSTC-SS--TTSTT--SEEEEEETTT.....TEEEEEE-.......-B-TT CS
    Trp_DMAT   2 qrfWwkttgpllaslLeeagYsveqqyehLlffrkvvvPaLGprp..askrspkwkslltddgsPiElSwnfsssgdkkptvRfaie.......pigpl 91 
                 +++Ww t+g++la+l++ea+Y+++  +e+L++fr++++ +LG +   as      ks l +dgsP+E+S++++s +d+++tvRf+++       p++ +
  CCE28661.1  31 SDYWWLTSGHDLAHLMQEANYPDHVAREFLSYFRQNICSQLGDEVtpAS-----KKSGLGWDGSPFEYSIELKS-TDSSQTVRFGVDlanlkapPADGE 123
                 58****************************************9884333.....36****************99.89****************888888 PP

                 BTSTTBTT--CHHHHHHHHHHHH.STT---HHHHHHHHHH.S--HHHHHHHHHGGGTTTS----EEEEEEEETTTEE..............EEEEEE-T CS
    Trp_DMAT  92 agteedplnqqatrellerlaqlavpgvdlewfdhfkeal.llseeeeaklaekgekskkaksqvflafdlkkggki..............vlKaYffP 175
                 +  +e  l+++ tr+++ +la +a  g+d++w++++ + +   ++++e++l  +  ++  +++ ++++fd+++++ +              ++KaYf+P
  CCE28661.1 124 EVDGEGVLSTSGTRKVVGTLAGKA-LGFDDTWYHSLLKFFdQSQQTKERQL--ELATQVGHQTPIVVGFDIQPKAAPstlgkdgeiqtlpaMAKAYFPP 219
                 889********************7.***************55333333333..22233334556********855558899999999888666****** PP

                 HHHHHHHT--HHHHHHHHHHHH...CS..GCCHHHHHHHHHHHHHCE----EEEEEEEEESS-CCC--EEEEEEESEESHHHHHHHHTTTTT-SH.HHH CS
    Trp_DMAT 176 rlkalatgqsaeelvfdairal...kp.geelepalklleeylesrpkkeklrpellsiDcvdpsksRlKiYlrtpstsfdsvrdvmtLGGrlddeete 270
                 +++a+a+gq+++++++dai++l   ++ ++ l ++lk++++yl+++p+++k  +++l++D+v+p+ksRlKiYlr+p +sfd+++d++tLGGr+  ++ e
  CCE28661.1 220 CHTAAARGQTRWHTICDAIHQLpdiATkYPVLLDSLKMIDDYLATKPESWKEGARYLATDFVSPEKSRLKIYLRYPGNSFDEIWDFFTLGGRV--PAPE 316
                 *************************7779****************************************************************..899* PP

                 HHHHHHHHHH.HHCT---EE-...---.................EEEEEEE-TT-SS-EEEEEEE-T..TS-HHHHHHHHHHHHHHCT-HHHHHHHH CS
    Trp_DMAT 271 eglellrelwklllglpegfr...plpek.sktekdessl.ssgllfyfelkpgkelPepKvYipvrhygenDlaiaraleeffeklgwgeaaesye 362
                 ++ +++++l+ +l g  +g+        +  ++  d++++ ++ +++yf+l+ ++ +P+pK+ i+++++++nD +iar+l+++++k++w   ++s e
  CCE28661.1 317 HNKAMFQDLM-TLTGPSDGTDngrS---HtVNPDLDYTNFrRKMTCIYFSLSNKNRTPAPKIGIYPANFAANDGVIARGLDKWLQKYDWPVPNRSIE 409
                 **********.55555555554531...2346778999995666667*****9999*********************************98888766 PP

>> DUF5071  Domain of unknown function (DUF5071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0041        37      68      92 ..     151     176 ..     138     182 .. 0.81
   2 ?    5.1   0.0    0.0028        25      28      53 ..     390     416 ..     383     422 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0041
                 -HHHHHHHHHHHGGGS-HHHHHH.HH CS
     DUF5071  68 Deewkyfvleflveklpveskkk.lk 92 
                 D++w +++l+f++++ ++++++  l+
  CCE28661.1 151 DDTWYHSLLKFFDQSQQTKERQLeLA 176
                 9************9887776554355 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0028
                 HHHHGGGS-TTSTT.HHHHHHHHHHTG CS
     DUF5071  28 peLLeWlqDlNwPi.aspiaelLarfp 53 
                   L +Wlq + wP+  ++i e+L++ +
  CCE28661.1 390 RGLDKWLQKYDWPVpNRSIEEQLKSVF 416
                 56779********83567888998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3382.25
//
Query:       CCE28662.1  [L=1056]
Description: related to nonribosomal peptide synthetase MxcG (component of the myxochelin iron transport regulon) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-28  100.2   0.0    1.5e-28   99.7   0.0    1.2  1  NAD_binding_4  Male sterility protein
    9.9e-28   96.9   0.0    1.9e-27   95.9   0.0    1.5  1  AMP-binding    AMP-binding enzyme
    1.6e-14   53.9   0.0    4.1e-14   52.6   0.0    1.7  1  Epimerase      NAD dependent epimerase/dehydratase family
    0.00095   18.2   0.0     0.0022   17.0   0.0    1.5  1  3Beta_HSD      3-beta hydroxysteroid dehydrogenase/isomerase 
     0.0029   17.9   0.0     0.0075   16.6   0.0    1.8  1  PP-binding     Phosphopantetheine attachment site
  ------ inclusion threshold ------
      0.012   15.6   0.1      0.043   13.7   0.1    1.9  1  KR             KR domain
      0.018   14.4   0.0        2.5    7.4   0.0    2.2  2  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
      0.027   14.0   0.0       0.05   13.1   0.0    1.3  1  NmrA           NmrA-like family


Domain annotation for each model (and alignments):
>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.0   6.5e-32   1.5e-28       1     255 [.     672     921 ..     672     923 .. 0.77

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 6.5e-32
                    EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHH....HHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTS.GGGG--HHH.HHHHHHH-- CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksge....saeeRleeelekkelfsallkelaerikvveGDlse.prlGLseed.lqelaeevd 89 
                    lTGaTGFLG+++l+ L+ +++ v kiy+l+R+         a   l ++l++k++ +      ++++++++ Dl++ ++lG+++ + ++ l +e +
     CCE28662.1 672 LTGATGFLGSHILAALIASKR-VhKIYALIRPHHRVpdaaVASSQLAAALQDKGFADLP----LDKVICIHHDLTKaDNLGIEPPHlYEALKKEAT 762
                    8******************97.66*******8755321115556665555555554444....8**********98357***9876156679**** PP

                    EEEE--SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHH CS
  NAD_binding_4  90 viihsaAtvnfdepykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEk 185
                    +iih+a  vnf+  ++ ++++ + G +++l+l+ + k++ +l ++S+  v+++ +g v           ++ ++ +++ ++g   +Y qsK ++E+
     CCE28662.1 763 HIIHCAWAVNFTIGLP-AFEPQIAGLHNLLSLCMQSKNQVCLQFCSSIGVAQAIQGPV-----------VIPSSAMPSLDTGGDLGYAQSKLVGER 846
                    *************998.67999*************************77777777787...........4579999******************** PP

                    HHHHHHHHH---EEEEEE-EEE--SSST..---TTSHHHHHHHHHHH.H-EEES..-SB---TT--EEEHHHHHH CS
  NAD_binding_4 186 lvrearrrsglpvvivRpsiitgesktG..wingsdlgirgllglia.kgvlpe..ilgdkeavldlvpvDyvan 255
                    ++++a +++gl ++++R++ i+     G    n s+ ++ ++ ++++ kg + +  il+  + v+d++ +D++a+
     CCE28662.1 847 IIESAVKNHGLSAMVLRIGQIVPGRRRGakLWNPSEAIPLMIRAAMQgKGSIESlpILCPGRDVCDWIEADTLAD 921
                    **********************96666644234444344444444332444433114445556677777776665 PP

>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   8.7e-31   1.9e-27      19     365 ..      41     374 ..      19     416 .. 0.80

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 8.7e-31
                  STEEEEHHHHHHHHHHHHHHHHHTTS...STT-E..EEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTE.......SEEEETCTC CS
  AMP-binding  19 egqtlTYreldervnrlAagLrslGv...kkgdr..VaillpnspewvvallailkaGavvvplnptltaeelayiledsea.......kvliatvds 104
                  + ++l+ + l++ +n  A+ L ++G     +++r  V++++p+ ++++v+++a+ k+G +++ ++p+l ++++a +l+ +++       +vl+  + +
   CCE28662.1  41 DFERLSGAALYRFINGGAKTLVERGFpvlAPDERivVGVCSPTDLDYLVTIFALIKLGYIPMQISPRLAPRAMADLLKLVQSpeqdkknTVLL--CGE 136
                  5788999999999999999999888544578888889****************************************9887733333325555..666 PP

                  CC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCCTT CS
  AMP-binding 105 el.leklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfklke 201
                   l  ekl++  ++l   +l ++l ++      e +++ ++  +   p  +++ + d  ++i+ +SG+TG P  + +shr l+a++a +         +
   CCE28662.1 137 SLsREKLRSLGQDL---ELHLLLTRE------EYDQDVDEVYV---PNMNDAGRYDRQCIILHSSGSTGLPTPIDYSHRKLLAAAAYA---------Q 213
                  66555565555543...333333322......22233322223...334556888****************************97774.........3 PP

                  T-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHH CS
  AMP-binding 202 ddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggeplspel 299
                  d + + +lp++h++g+ ++ + a+++  t+  +++  + ++ ++ +++++ k+ ++++vP vl+ l+e++a       + l + r+v +gg++l+ ++
   CCE28662.1 214 DATAFITLPFSHALGM-MSYMQAFAKRRTMFAMSGHVPQTQITVTAALTEAKPDIVWTVPYVLKLLAEQPAGV-----EALRRCRFVSSGGSRLPDDV 305
                  4567999********8.*******************99555677899*******************9976444.....37888999999********* PP

                  HHHHHHHHTCEEEEEEEEGGGSSECEE...CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEE.TTSEE CS
  AMP-binding 300 lrffralfgeevlegYGlTEttgvvtv...lpleedkkklgsvGkplpgvevkivDeetgepvp.dgeeG 365
                   +f+ +++ + +   +G TEt+  ++    +++++ +++l     ++p ++ ++vD+ + e v   g++G
   CCE28662.1 306 GDFLTERGVH-LGMQFGSTETGLLMSSayrPREDKAWNYLRPPPHVVPYIRFELVDQGQYECVVlAGHKG 374
                  *******987.9999**********555577777777777777788899999999987555553355555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   1.8e-17   4.1e-14       1     225 [.     670     926 ..     670     936 .. 0.83

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 1.8e-17
                 EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC...................EEEE--TT-HH.......HHHHHHHHHT-SEEEE- CS
   Epimerase   1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl...................elveldltdrs.......alerlfkeeqpdavihl 71 
                 +++tGatGf+Gs+++ al + +  +++ +l r  ++ + a+ +                       ++ dlt+++        l +++k+ +++++ih+
  CCE28662.1 670 VVLTGATGFLGSHILAALIASKrvHKIYALIRPHHRVPDAAVASSqlaaalqdkgfadlpldkvICIHHDLTKADnlgieppHLYEALKK-EATHIIHC 767
                 578*****************9998888888888777666665555999****************66666666666555557788899996.8******* PP

                 -S---HHHHHHSHHHHHHHHTHHHHHHHHHHHHHTCT.EEEEEEEGGGGTSCSS...SSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEE CS
   Epimerase  72 Aavggvaassedpadfieknlqgtlnlleaarkagvk.rllflsSsevYGkdae...qpkeettltgplkpnspYaaaKlageklveayaaqyglnaii 166
                      +a++++     +e  ++g  nll+ + +++ +  l f+sS  v  + +    +p ++ + +  +     Ya +Kl ge+++e++ + +gl+a++
  CCE28662.1 768 ----AWAVNFTIGLPAFEPQIAGLHNLLSLCMQSKNQvCLQFCSSIGVAQAIQGpvvIP-SSAMPSLDTGGDLGYAQSKLVGERIIESAVKNHGLSAMV 861
                 ....89*************************9885552777788866666666543334.44443555588899************************* PP

                 EEESEEE.STTS-TTS..TTSHHHHHHHHHHTTS...SSEEEETTST-EEEEEEHHHHHHHHHHH CS
   Epimerase 167 lrlfnly.Gprngege..vsrvipalirkilegk...qevtllgdgtalRdflyveDvaeaillv 225
                 lr+  ++ G r+g +   +s  ip +ir + +gk   +++ +l  g+ + d++ ++ +a+ ++ +
  CCE28662.1 862 LRIGQIVpGRRRGAKLwnPSEAIPLMIRAAMQGKgsiESLPILCPGRDVCDWIEADTLADTVVQL 926
                 ****98835557766557****************9999********************9999876 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.9e-07    0.0022       1     160 [.     671     851 ..     671     864 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.9e-07
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD.........lrespelleelskvnvkk.......viegDvtdkdkl.......eeale.gvdvvihlas 75 
                 v+tG++GFlG+++  +L+  ++++++ +l           + s++l   l+  + ++       +i+ D+t++d+l        eal+ ++  +ih a 
  CCE28662.1 671 VLTGATGFLGSHILAALIASKRVHKIYALIrphhrvpdaAVASSQLAAALQDKGFADlpldkviCIHHDLTKADNLgiepphlYEALKkEATHIIHCAW 769
                 68********************99996655555555556444455555555555555666778899999998875422222227888626788899887 PP

   3Beta_HSD  76 lvdvagkltedeimkvnvkGTrnvleacvkagvrv.lvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlka 160
                 +v+ +  l      +  + G +n+l+ c+++  +v l ++Ss++v+    +g  ++ +     +++     y++sK + E+++ +a
  CCE28662.1 770 AVNFTIGLP---AFEPQIAGLHNLLSLCMQSKNQVcLQFCSSIGVAQA-IQGPVVIPSSAMPSLDTGGDLGYAQSKLVGERIIESA 851
                 777665333...35789************998876367******9988.6666666555555555555666888888888777666 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.4e-06    0.0075      21      66 ..     569     619 ..     552     620 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.4e-06
  PP-binding  21 dtdlfdlGlDSllavellaaleeefgv.....eiplsdlfehptlaelaay 66 
                  +d+f+ G+DSl+a++l +++ +  ++     + +    fe+ + ++la++
  CCE28662.1 569 FADFFSAGMDSLQATRLRGQILRNIDLggheeQCTAMIAFECGNARNLAER 619
                 589******************999877667778888888888888888876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.9e-05     0.043       3     125 ..     670     796 ..     668     818 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.9e-05
                 EEEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS......--HHHHHHHHHHHHTT-......EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE-- CS
          KR   3 ylitGGlGgLGlelarwlaekg.arhlvllsRsa....aadedskaliaelealga......evevvaaDvsdkdavealleeikaee.ppikGvihaA 89 
                 +++tG++G LG ++   l+++   +++  l R +     a  +s++l a+l+++g       +v +++ D++++d++     ++ +   ++ + +ih+A
  CCE28662.1 670 VVLTGATGFLGSHILAALIASKrVHKIYALIRPHhrvpDAAVASSQLAAALQDKGFadlpldKVICIHHDLTKADNLGIEPPHLYEALkKEATHIIHCA 768
                 689*********998888766548999999999855544444455799999**999999*****************975443333333377799***** PP

                 -------TTT--HHHHHHHHTTTTHHHHHHHHHTTT CS
          KR  90 gvlrdklleemtaedleqvlapKvkGawnLhelled 125
                  +++ +            +++p ++G++nL  l+ +
  CCE28662.1 769 WAVNFTIGL--------PAFEPQIAGLHNLLSLCMQ 796
                 988765432........3455555555555555555 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0011       2.5       2      28 ..     672     697 ..     671     746 .. 0.85
   2 ?    4.8   0.0    0.0071        16     153     228 ..     837     918 ..     831     934 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0011
                    EETTTSHHHHHHHHHHHHCT-CCEEEE CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgiv 28 
                     TG +Gf Gs+++  L++   +vh i 
     CCE28662.1 672 LTGATGFLGSHILAALIAS-KRVHKIY 697
                    5***************987.5677665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0071
                    HHHHHHHHHHHHHHHHHHH---EEEEEE-E.EESTTS-TT..SCCCHHHHHHHHHHTTS...-C-EECTTTT-EEEEEEHHH CS
  GDP_Man_Dehyd 153 YaaaKlyadwivvnyreayglfavngilfn.hesprrget..fvtrkitravarialgk...qevlylGnldakRdwghvkD 228
                    Ya +Kl+ + i+++  +++gl a++ ++     + rrg++   + + i++++  + +gk   ++ ++l  ++ + dw  ++ 
     CCE28662.1 837 YAQSKLVGERIIESAVKNHGLSAMVLRIGQiVPGRRRGAKlwNPSEAIPLMIRAAMQGKgsiESLPILCPGRDVCDWIEADT 918
                    **************************999967889999984458899*****999999843344555666777777776655 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.2e-05      0.05       1      44 [.     670     724 ..     670     746 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.2e-05
                 EEESSTTSHHHHHHHHHHHH..HT-EEEEEES-S.........-SHHHHHHHHST CS
        NmrA   1 IlviGaTGrqGksvvrallk..aghkvralvRdt.........kselakslkeaG 44 
                 ++ +GaTG +G+++ +al++  + hk+ al+R           +s+la++l+++G
  CCE28662.1 670 VVLTGATGFLGSHILAALIAskRVHKIYALIRPHhrvpdaavaSSQLAAALQDKG 724
                 5789*************9996678********99999999999999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1056 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 7128.93
//
Query:       CCE28663.1  [L=330]
Description: uncharacterized protein CPUR_02351 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-91  307.2   0.0    1.3e-91  306.9   0.0    1.1  1  DUF410    Protein of unknown function (DUF410)
  ------ inclusion threshold ------
      0.092   12.1   0.8        1.4    8.3   0.1    2.2  2  TPR_MalT  MalT-like TPR region


Domain annotation for each model (and alignments):
>> DUF410  Protein of unknown function (DUF410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.9   0.0   1.5e-95   1.3e-91       2     255 .]      39     301 ..      38     301 .. 0.98

  Alignments for each domain:
  == domain 1  score: 306.9 bits;  conditional E-value: 1.5e-95
      DUF410   2 kkydeAidllyqgalellkakqygsgaDLalllvevyekaevevdeeskdrliellskfpaeeperkkfikaaikwSakkgekkaGdpeLhhllaklll 100
                 k++d+A+d+l ++a++llka+q+gsg+DL++++++vy++ae+++++++k+r++++l++f+aeep+rkkfi++a+ wSak+g+ +aGdpeLhh++++l++
  CCE28663.1  39 KNWDAAVDILANVAQSLLKAGQGGSGGDLCIMMMDVYKQAELKPEAAAKGRILTCLRLFDAEEPTRKKFISEAVGWSAKFGDFPAGDPELHHVAGSLYA 137
                 89************************************************************************************************* PP

      DUF410 101 kegeleeAerhlllgtddsaeelakllvewaeegeeseadlfiaRavLqylllgnvkaAnklldeflkkleskessll.......te..rvfp.lplln 189
                 +e++ +eAerhlllgt+ds+e l k+ ++w++ege + a  f+ RavL+yll+gnv+aAn++++ f+++l++++++l        ++  rvfp lplln
  CCE28663.1 138 EEHDTYEAERHLLLGTKDSPECLFKMEYAWFKEGEAHLAPHFAGRAVLPYLLVGNVRAANTCYRLFTSALSDDNPGLGvqsvssaSAdiRVFPsLPLLN 236
                 ***************************************************************************988**999763368********** PP

      DUF410 190 FlqlllltiqrkskelFkkLkekYkpslkrdpslkeylekIgelyFgikpprqqsnglqdmmssLl 255
                 Fl llll+iqr+++e+Fk L++kY++++++++ ++e le I+e+yF i +prq sn+l+dmms+L+
  CCE28663.1 237 FLGLLLLAIQRAAPEVFKGLVSKYARQIDEAHGWAEPLEMIAEMYFSIARPRQ-SNPLMDMMSGLF 301
                 ****************************************************9.9**********9 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1   0.00015       1.4     228     301 ..      13      86 ..       3      92 .. 0.86
   2 ?    2.0   0.1     0.012   1.1e+02     125     149 ..     129     153 ..     126     167 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00015
    TPR_MalT 228 aelpsdddnhflelelrnlarvllalgrydeAlellerLlkaaeelgrvrslieiliLqalalqaqgreeeAla 301
                 +e+ s++d++  +++ r+ a  +++  ++d+A  +l++  ++  ++g  +s  +  i++  ++++ + ++eA+a
  CCE28663.1  13 QEKISQGDYYEAQQQTRVAASRYIKTKNWDAAVDILANVAQSLLKAGQGGSGGDLCIMMMDVYKQAELKPEAAA 86 
                 4444666778888888***********************************************99998888876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.012
    TPR_MalT 125 lvlladllyEwndLeeAeqhlqeGi 149
                 + + + l+ E +d  eAe+hl+ G 
  CCE28663.1 129 HHVAGSLYAEEHDTYEAERHLLLGT 153
                 55669****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2535.24
//
Query:       CCE28664.1  [L=147]
Description: uncharacterized protein CPUR_02352 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.033   15.0   2.5      0.056   14.3   2.5    1.4  1  FliT             Flagellar protein FliT
      0.076   13.2   0.7       0.11   12.7   0.7    1.3  1  PEP-utilisers_N  PEP-utilising enzyme, N-terminal


Domain annotation for each model (and alignments):
>> FliT  Flagellar protein FliT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.5   6.3e-06     0.056       8      48 ..      82     123 ..      77     137 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.3e-06
                 T-HHHHHHHHHHHHHHHHHHHCS-.-ST--HHHHHHHHHHHH CS
        FliT   8 gdWdelaaleaerqqlverlreld.aaplspaereekrellr 48 
                 ++ ++ ++ e+erq+l+e+l++ + ++ ++p+++ee+ e+ r
  CCE28664.1  82 EQVEDKHEIEKERQRLAEALKHHSeNTHAPPDQQEELLEAVR 123
                 67888899****************999999999999999988 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   1.2e-05      0.11      22      73 ..      83     129 ..      59     139 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
                      ---G.GGHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHT-H CS
  PEP-utilisers_N  22 eeveaedveaelerleeAlekvreelealaekalgeeeaaifeahlmlleDp 73 
                      +  +++++e+e++rl eAl++  e   a       +++++++ea ++ l+D+
       CCE28664.1  83 QVEDKHEIEKERQRLAEALKHHSENTHAPP-----DQQEELLEAVRASLRDK 129
                      4445677*******************9954.....33466899998888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1366  (0.0761894); expected 358.6 (0.02)
Passed bias filter:                      724  (0.0403815); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1186.71
//
Query:       CCE28665.1  [L=171]
Description: uncharacterized protein CPUR_02353 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.7e-66  220.4   3.4    1.1e-65  220.2   3.4    1.0  1  UPF0220      Uncharacterised protein family (UPF0220)
  ------ inclusion threshold ------
        0.3   11.0   3.1       0.31   10.9   0.6    2.2  2  DUF5337      Family of unknown function (DUF5337)
       0.42   10.7   6.8       0.45   10.6   1.5    2.0  2  ECF_trnsprt  ECF transporter, substrate-specific component


Domain annotation for each model (and alignments):
>> UPF0220  Uncharacterised protein family (UPF0220)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.2   3.4   1.8e-69   1.1e-65       2     166 .]       3     165 ..       2     165 .. 0.99

  Alignments for each domain:
  == domain 1  score: 220.2 bits;  conditional E-value: 1.8e-69
     UPF0220   2 edrlfrfrkpklklensakrravgvylaGaLfalgfwlliDaaivskka.nasdvhvtfvdwipgicstlgmlivnsieksrlsgdslgqsgssvawka 99 
                 edrl++fr+p  ++ n+ ++r+ gvy++GaLf+++f++++Daa++sk++ n+s+vhv+fvdw+p+i+s+lgmli+ns+ek+rls+ds+++sgs+vawka
  CCE28665.1   3 EDRLWKFRRP--EWLNRVWARNSGVYASGALFSIAFYVMLDAAVWSKSSkNGSNVHVKFVDWLPLIFSSLGMLIINSVEKQRLSADSFSYSGSGVAWKA 99 
                 799*******..899********************************999************************************************* PP

     UPF0220 100 rvvLflGfallagglagslvvlilkYvvkdytefptlgmGvanvlqNllimlssvvlwvsqnvedeY 166
                 rvvLflGfa lagg+ag+++v++lk+ v++  ++p+l mG++n+++N+l+ +s+vvlw+sqn+edeY
  CCE28665.1 100 RVVLFLGFAALAGGMAGGVTVFVLKFAVPGV-GMPALSMGIENLVSNALVGASAVVLWISQNMEDEY 165
                 *******************************.8*********************************9 PP

>> DUF5337  Family of unknown function (DUF5337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   5.2e-05      0.31      32      63 ..      90     121 ..      87     126 .. 0.79
   2 ?   -0.9   0.1      0.24   1.4e+03      17      30 ..     146     159 ..     144     162 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.2e-05
     DUF5337  32 wigeqlglsnRyalLfdLaAlAaliwalvvty 63 
                 + g+ + + +R++l++ +aAlA+ + + v ++
  CCE28665.1  90 YSGSGVAWKARVVLFLGFAALAGGMAGGVTVF 121
                 5578889***************9666666555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.24
     DUF5337  17 alviavtmllwlga 30 
                 alv a +++lw+  
  CCE28665.1 146 ALVGASAVVLWISQ 159
                 78889999999975 PP

>> ECF_trnsprt  ECF transporter, substrate-specific component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.3     0.014        86     128     166 ..      40      78 ..      22      78 .. 0.60
   2 ?   10.6   1.5   7.6e-05      0.45      45      96 ..     109     161 ..     100     171 .] 0.76

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.014
                  HHS.............--HHHHHHHHHCCTTCCHHHHHH CS
  ECF_trnsprt 128 lylklktakaiaiagkallaailgpiivkglieaiiaai 166
                  l + +  ++  +  + ++ ++ ++p+i+ +l + ii+++
   CCE28665.1  40 LDAAVWSKSSKNGSNVHVKFVDWLPLIFSSLGMLIINSV 78 
                  222333333334444788899999999999999999986 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 7.6e-05
                  CHHHHHHHHH.HHHHHHHCHT-SSTTHHHHHHHHHHHHCHHHHHHHHHHCCCH CS
  ECF_trnsprt  45 pikGailgii.tsvlkailtggtgalssfvpiaflsriligliagllykkgkk 96 
                   ++G+++g++   vlk+ + g +++ +s+++++ +s++l+g  a++l++ ++ 
   CCE28665.1 109 ALAGGMAGGVtVFVLKFAVPGVGMPALSMGIENLVSNALVGASAVVLWISQNM 161
                  578999999956677888855556666677***************99976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1239.93
//
Query:       CCE28666.1  [L=353]
Description: related to CSI2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.3    7.4  13.9        8.3    6.8   4.7    2.6  2  DUF1180   Protein of unknown function (DUF1180)


Domain annotation for each model (and alignments):
>> DUF1180  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.7   0.00047       8.3       7      87 ..      11      95 ..       4     131 .. 0.69
   2 ?    5.8   1.4   0.00093        17       5      78 ..     132     231 ..     128     261 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00047
     DUF1180  7 lvlLLlllLaa...saadasralspaasspeaepPlppgataaespgkataieaksaqaaeggngsspragsaad.aggslavvp 87
                ++lL + +L a   ++++ s++ + + s   +++P++  a +a s  + +++e +s+++  gg + s++ g+++  + ++ +v+p
  CCE28666.1 11 SALLSTGFLVAsvvAQQESSTTDATSSSVSASDKPSSTIANTASSVTNGPTTEVTSKMSITGGPQTSTGGGLTGFpTLTGPGVIP 95
                4556666666633234444444555555566668998888888899999999*******99999999888887765455666666 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.00093
     DUF1180   5 LalvlLL.....lllLaasaadasralspaasspeaepPlpp...................gataaespgkataieaksaqaaeggngss....prags 75 
                 L l+lL+     +l+L  s+++a+ a++   s ++++ P pp                   gat+a s+g+ +   ++ +    + ++s+    p+ag+
  CCE28666.1 132 LGLALLIwrsfaSLMLHRSVERAALAQHV--SDDKTSFPAPPapfykysdqtssmslgglgGATSAASAGRGVRRANRASVPTGTPSQSNlffsPTAGA 228
                 55667767777678887666666655554..45555555555558999965555555555555555555444442222222222222222333333333 PP

     DUF1180  76 aad 78 
                  a 
  CCE28666.1 229 GAG 231
                 333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2594.72
//
Query:       CCE28667.1  [L=213]
Description: uncharacterized protein CPUR_02355 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1640.59
//
Query:       CCE28668.1  [L=382]
Description: conserved uncharacterized protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-17   63.7   0.1    3.6e-17   62.6   0.1    1.5  1  rve              Integrase core domain
    1.8e-06   27.7   0.0    3.1e-06   27.0   0.0    1.3  1  gag_pre-integrs  GAG-pre-integrase domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.1     4e-21   3.6e-17       3     116 ..     164     278 ..     162     280 .. 0.93

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 4e-21
         rve   3 rpgelwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggve.pervlsDngseytskafrefladlgirvsftrpg 100
                 +  +++  D+ + +  + gg  y l+++d+++++ +++++ ++++a  ++a+++ av++  g   ++ +++Dn++e+ s +fr f+++ gi  ++ +p+
  CCE28668.1 164 HFLSRVFWDFIEHKPEGFGGMRYTLHAIDVHTHFHWVIPTVSRANAFKAVAAWKTAVENASGGYkVQCFHTDNATEFLSAKFRGFCQSEGIIFRTGAPY 262
                 56788999***777677788***************************************999668********************************** PP

         rve 101 rpqdnGkvErfhrtlk 116
                  p  +G+vEr+ rtl 
  CCE28668.1 263 VPAHQGIVERAGRTLL 278
                 ***********99985 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   3.4e-10   3.1e-06      15      67 .]      97     150 ..      73     150 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 3.4e-10
  gag_pre-integrs  15 vslsknkssinlWHrRLGHpsfsrlkkLfkkgl..lpglkisksevCeaCqlgKq 67 
                      +s  ++  ++ l H+RLGH + +r+ k +k+    +++ +   +++C+aC l+K+
       CCE28668.1  97 SSSITKQVEFGLLHKRLGHAGKDRIVKACKEAGiaIDPRS-LANFQCPACLLAKA 150
                      34445789999******************95442233333.44888*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 3042.78
//
Query:       CCE28669.1  [L=229]
Description: uncharacterized protein CPUR_02357 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.056   14.0   4.2      0.087   13.4   4.2    1.3  1  SRRM_C    Serine/arginine repetitive matrix protein C-terminu


Domain annotation for each model (and alignments):
>> SRRM_C  Serine/arginine repetitive matrix protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   4.2   4.9e-06     0.087      21      43 ..     185     206 ..     178     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-06
      SRRM_C  21 keakrerkrrrrrSySPirkRrR 43 
                  e+ r  krrr++S+SP+ kR+R
  CCE28669.1 185 AEQPR-TKRRRSQSRSPLAKRQR 206
                 44455.47**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1917.90
//
Query:       CCE28670.1  [L=1519]
Description: probable ATP-binding cassette transporter protein YOR1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-53  182.4  39.8    8.3e-35  120.8  17.3    3.1  3  ABC_membrane    ABC transporter transmembrane region
    4.9e-47  159.9   0.4    2.1e-25   89.8   0.0    3.1  2  ABC_tran        ABC transporter
    6.4e-06   26.2   1.4      0.053   13.6   0.3    2.7  2  MMR_HSR1        50S ribosome-binding GTPase
    1.2e-05   25.3   0.3       0.01   15.8   0.0    2.5  2  RsgA_GTPase     RsgA GTPase
    1.5e-05   24.6   0.4      0.046   13.5   0.0    2.8  2  AAA_29          P-loop containing region of AAA domain
    2.9e-05   24.5   0.0       0.15   12.4   0.0    2.7  2  AAA_16          AAA ATPase domain
    7.8e-05   22.2   1.3        1.9    7.8   0.0    3.5  3  SMC_N           RecF/RecN/SMC N terminal domain
    0.00031   20.9   0.6        0.2   11.7   0.5    2.7  2  DUF87           Helicase HerA, central domain
    0.00043   20.2   0.3        1.7    8.4   0.2    3.2  3  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
     0.0023   18.2   0.5        2.2    8.5   0.0    3.4  3  AAA_22          AAA domain
     0.0024   17.2   0.1       0.24   10.7   0.0    2.4  2  Zeta_toxin      Zeta toxin
     0.0047   16.7   0.0       0.14   11.8   0.0    2.5  2  IstB_IS21       IstB-like ATP binding protein
     0.0093   14.9   0.7       0.95    8.3   0.0    2.3  2  TrwB_AAD_bind   Type IV secretion-system coupling protein DNA
  ------ inclusion threshold ------
      0.014   15.1   3.8        2.9    7.5   0.0    3.2  3  AAA_30          AAA domain
      0.019   14.9   0.1          4    7.3   0.0    2.3  2  Ploopntkinase3  P-loop Nucleotide Kinase3
      0.042   13.9   6.8      0.072   13.1   0.2    3.0  2  Dynamin_N       Dynamin family
      0.079   13.2   0.2         14    5.9   0.0    2.7  2  Roc             Ras of Complex, Roc, domain of DAPkinase
      0.087   13.4   0.9        2.6    8.6   0.0    2.6  2  AAA_18          AAA domain
      0.088   12.3   0.1        3.1    7.3   0.1    2.3  2  AAA_7           P-loop containing dynein motor region
       0.11   12.7   1.5       0.35   11.1   0.0    2.5  2  AAA_28          AAA domain
       0.17   10.8   3.9          4    6.3   0.2    2.6  3  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
        2.1    8.8  12.6        1.8    9.0   0.0    3.3  3  AAA_23          AAA domain
        3.9    7.3   4.6        5.9    6.7   0.3    2.8  3  SPC25           Microsomal signal peptidase 25 kDa subunit (S


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   1.0    0.0018       1.4       2      88 ..     205     299 ..     204     302 .. 0.89
   2 !   64.3   6.6   1.8e-20   1.4e-17      97     272 ..     352     524 ..     351     526 .. 0.95
   3 !  120.8  17.3   1.1e-37   8.3e-35       5     268 ..     934    1189 ..     931    1197 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0018
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS...TCCHH........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldk...gdpet........ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrq 87 
                   +l+ l+a+l+ +l+++ p+ l  ++++ +d    +             + + ++l ++++ l+q++++  + +  +++g++ +  l + +++k + +
    CCE28670.1 205 WLGGLCALLNSILQVVSPFTLRFLIQFAVDAyaaN---AngtpappmKNGIGLALGVTAMQLLQAFCVSHYIFRGMMMGGQSRAVLIAFIYEKAMVL 298
                   68899***********************9986553...2445889999**********************99999***********99999999977 PP

                   T CS
  ABC_membrane  88 p 88 
                   +
    CCE28670.1 299 S 299
                   5 PP

  == domain 2  score: 64.3 bits;  conditional E-value: 1.8e-20
                   HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH CS
  ABC_membrane  97 vGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtV 193
                    G+++++++ d+++++++ + ++++++ +++++++++++++ l  + +l+++a+l+l ++ +   ++ l + +k  +k ++++ s+++E+l+ +r V
    CCE28670.1 352 NGRIVNLMSVDTYRIDQACALFHMTWSSPIAVIITLVLLLVNLTYS-ALAGFALLILGVPAITKAMQSLFRRRKAINKITDQRVSLTQEILQSVRFV 447
                   69***************************************99998.8************999999999999999********************** PP

                   HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHH CS
  ABC_membrane 194 kafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfg 272
                   k+fg+e++f+ +  + + ++ ++    + +++++++++++++ ++ ++ +   ++ v s+ l + +++  l+lf+ l  
    CCE28670.1 448 KYFGWEKAFIARLGEFRAKEIHSIQVLLAIRNAINAVSMSMPIFASMVSFI--VYSVTSHGLGPAEVFSSLALFNALRL 524
                   *************************************************66..77888888999999999999998865 PP

  == domain 3  score: 120.8 bits;  conditional E-value: 1.1e-37
                    HHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHH CS
  ABC_membrane    5 illailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGe 99  
                    +  +i+++++++++ l+l+ ++++ ++     +  + +y+ ++++lg++q++l++l s +l+v+g + sk + r++++++lr+pmsffdt++ G+
    CCE28670.1  934 LAILIISQGANLATGLWLSWWTSDKFG----YS--TGMYIGIYAALGAIQALLMFLFSVTLSVLGTKSSKVMLRDAVHRVLRAPMSFFDTTPLGR 1022
                    6678999999******99999999998....33..5789******************************************************** PP

                    HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH CS
  ABC_membrane  100 llsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVk 194 
                    +++r++ dv+  ++ l++ + +ff  ++++++++++++ + ++++++l++++ l+++++ ++    +++k+ e+  ++++++ + E lsg+  ++
    CCE28670.1 1023 ITNRFSQDVDVTDNNLADAIRIFFLTVAMVIAIFALIIAYFPWFAIALVPLSCLFVFSASYYRASAREVKRFESVLRSNVFARFGEGLSGVASIR 1117
                    *********************************************************************************************** PP

                    HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHH CS
  ABC_membrane  195 afgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfa 268 
                    a+g +++f+++  +a++e+ +a++     +++l+ +++l+g ++++ ++ + +t   + ++s++    +ls++ 
    CCE28670.1 1118 AYGLQARFVTQLRDAIDEMDSAYFLTFSNQRWLSLRLDLVGIAFVFTVAILVVTSRFNVNPSISG--LVLSYIL 1189
                    ************************************************99988888777777777..4444444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0     3e-21   2.3e-18       1     136 [.     653     787 ..     653     788 .. 0.76
   2 !   89.8   0.0   2.7e-28   2.1e-25       1     137 []    1260    1434 ..    1260    1434 .. 0.87

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 3e-21
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTC...HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxx...xxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdee...iekals 90 
                 l+++++k+k++e++a++G  G+GKS+Ll++lag +++t+G++ +          + +  + ++++  ++l++++t +++       + ++   +e+ ++
  CCE28670.1 653 LHDINFKIKRDELIAVIGTVGSGKSSLLAALAGDMRKTNGDVVYG-------ASRAFCPQYAWIQN-TTLQNNITFGKEmdrdlyREVVRacaLEADVD 743
                 789***************************************333.......33444445555433.36666666555556655422222333555555 PP

                 HSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  91 klglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  l + +  +t +++++ ++SgGqkqr+ +ara+  +++++l+D+p 
  CCE28670.1 744 MLPNGD--QTEIGERGITISGGQKQRLNIARAIYFDADIVLMDDPL 787
                 555555..89999999****************************97 PP

  == domain 2  score: 89.8 bits;  conditional E-value: 2.7e-28
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsk 91  
                  l+ +s++++ ge+++ivG++GaGKS+++++l +l++   G+i++dg ++ +  l  lr++++++pq+p+lf+++ vr+n      + d e++ al++
  CCE28670.1 1260 LQGLSMHVRGGERIGIVGRTGAGKSSIMSTLFRLVEISGGSITIDGINIATMGLFDLRSRLAIIPQDPTLFQGT-VRSNldpfqeHTDLELSSALRQ 1355
                  6789**********************************************************************.*******999555556666666 PP

                  STTGG.................................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   92 lglke.................................lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                   +l+                                  + d++v++++ ++S Gq+q +alaral+++++++++DE+t+
  CCE28670.1 1356 ADLVPpevslplgedrpgagqgdsqgrgasagvegsriTLDSIVEEDGLNFSLGQRQLMALARALVRNSRIIVCDEATS 1434
                  666556666666666666667777777777777777788899999999*****************************96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00053      0.41       2      24 ..     666     688 ..     665     717 .. 0.86
   2 !   13.6   0.3   6.8e-05     0.053       1      21 [.    1272    1292 ..    1272    1309 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00053
                 EEEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgeka 24 
                 +a++G   +GKS+L+ al g+  
  CCE28670.1 666 IAVIGTVGSGKSSLLAALAGDMR 688
                 89****************99733 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.8e-05
                  EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1    1 evaivGrpNvGKStLinaltg 21  
                  +++ivGr+ +GKS+++++l++
  CCE28670.1 1272 RIGIVGRTGAGKSSIMSTLFR 1292
                  69****************987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.3e-05      0.01      65     130 ..     628     694 ..     615     700 .. 0.79
   2 !    6.9   0.1    0.0071       5.5      96     121 ..    1266    1292 ..    1250    1304 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.3e-05
                  HHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  65 leelkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  +++ + e  + +++ +lv++++  +l++++ ++k  ++++++G  G GKS+L+ al+++++   g+v
   CCE28670.1 628 ASTANVEEDKEDTASTLVEEREPFQLHDINFKIKRdELIAVIGTVGSGKSSLLAALAGDMRKTNGDV 694
                  4444445555666777888889999********9889*********************987766665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0071
                   HCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase   96 llkd.ktsvlvGqSGvGKStLinallp 121 
                   ++++ + + +vG +G+GKS+++ +l  
   CCE28670.1 1266 HVRGgERIGIVGRTGAGKSSIMSTLFR 1292
                   5555566779************99865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   5.9e-05     0.046      15      42 ..     656     683 ..     649     688 .. 0.79
   2 !    8.2   0.1    0.0026         2      19      39 ..    1267    1287 ..    1259    1294 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.9e-05
      AAA_29  15 htieidlkgatlltGpsGsGKSTllDAi 42 
                   ++i++++ + ++G+ GsGKS+ll A+
  CCE28670.1 656 INFKIKRDELIAVIGTVGSGKSSLLAAL 683
                 345666666999*************876 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0026
      AAA_29   19 idlkg..atlltGpsGsGKSTll 39  
                  ++  g   + ++G++G+GKS+++
  CCE28670.1 1267 VR--GgeRIGIVGRTGAGKSSIM 1287
                  33..3357789**********98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00019      0.15      25      63 ..     664     702 ..     652     827 .. 0.73
   2 !    9.2   0.0    0.0019       1.5      19      62 ..    1266    1309 ..    1253    1450 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00019
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 el+ ++G  G+GKssl+ +l+  ++k++g +++g  + +
  CCE28670.1 664 ELIAVIGTVGSGKSSLLAALAGDMRKTNGDVVYGASRAF 702
                 7999******************99999555555544444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0019
      AAA_16   19 vrsgrpelvllsGesGvGKsslvrellralekdg.giflrgkcdq 62  
                    +g+ e + ++G  G GKss++ +l+r +e +g  i++ g +  
  CCE28670.1 1266 HVRGG-ERIGIVGRTGAGKSSIMSTLFRLVEISGgSITIDGINIA 1309
                  55555.566699***************988877423434443333 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0025       1.9      24      44 ..     663     683 ..     651     701 .. 0.87
   2 ?    5.2   0.1     0.016        12      28      49 ..    1274    1294 ..    1269    1307 .. 0.86
   3 ?    5.7   0.0     0.011         9     136     207 ..    1405    1472 ..    1301    1477 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0025
                 SSEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAi 44 
                 +++ a++G  GSGKs+ll A+
  CCE28670.1 663 DELIAVIGTVGSGKSSLLAAL 683
                 45789**************98 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.016
                  EEEESTTSSHHHHHHHHHHHCT CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   28 aivGpNGSGKsnlldAilFvLG 49  
                   ivG+ G+GKs+++  + F L 
  CCE28670.1 1274 GIVGRTGAGKSSIMSTL-FRLV 1294
                  59************998.7765 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.011
                  CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadk 207 
                  ++S G+++L+ala       v+ + + + De  +  D +   k+ + + ++ +   +++i++r +++   d+
  CCE28670.1 1405 NFSLGQRQLMALARA----LVRNSRIIVCDEATSSVDMETDDKIQRTMATAFEGKTLLCIAHRLRTIIGYDR 1472
                  7899*****998754....5788899************************************9988766665 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0      0.01         8      26      52 ..     666     691 ..     610     695 .. 0.86
   2 !   11.7   0.5   0.00026       0.2      25      45 ..    1272    1292 ..    1267    1304 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.01
       DUF87  26 lAilgsTGsGKSntvavLleellekkg 52 
                 +A++g+ GsGKS + a L   +  k +
  CCE28670.1 666 IAVIGTVGSGKSSLLAALAGDMR-KTN 691
                 8**************99987666.555 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00026
       DUF87   25 HlAilgsTGsGKSntvavLle 45  
                  +++i+g+TG+GKS  ++ L++
  CCE28670.1 1272 RIGIVGRTGAGKSSIMSTLFR 1292
                  79****************986 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.2    0.0022       1.7       2      20 ..     666     684 ..     665     701 .. 0.88
   2 ?   -1.1   0.0       1.6   1.3e+03     219     297 ..     734     817 ..     703     822 .. 0.73
   3 !    7.9   0.0     0.003       2.4       3      50 ..    1274    1310 ..    1273    1362 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0022
      AAA_21   2 nvliGpNgsGKSnLLdald 20 
                  ++iG  gsGKS+LL al 
  CCE28670.1 666 IAVIGTVGSGKSSLLAALA 684
                 689**************94 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
      AAA_21 219 r......gvvflengdgqelparel..SdGtkrllalltallralkkgsllliDEpEngLHPkllrrll..ell.kelsrngaQv.iltTH 297
                 r      +v  l ngd  e+  r +  S G+k+ l ++ a++ ++   +++l D+p +  + ++ r+++    +  +l++   ++ il+TH
  CCE28670.1 734 RacaleaDVDMLPNGDQTEIGERGItiSGGQKQRLNIARAIYFDA---DIVLMDDPLSAVDAHVGRHIFdnA-IlGLLKD---KCrILATH 817
                 145555577778888888888888888999*9999********99...9*********99999999999742.3344433...34466666 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.003
      AAA_21    3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslld 50  
                  +++G+ g+GKS+++ +l  l            e sgg+ +++ ++  +
  CCE28670.1 1274 GIVGRTGAGKSSIMSTLFRL-----------VEISGGSITIDGINIAT 1310
                  69***************777...........34444444444444333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0029       2.2       4      26 ..     662     684 ..     659     741 .. 0.90
   2 ?    5.4   0.0     0.026        20      10      29 ..    1275    1294 ..    1268    1336 .. 0.89
   3 ?   -0.6   0.1       1.9   1.5e+03      81     129 ..    1415    1460 ..    1392    1468 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0029
      AAA_22   4 tagilvvtGesGtGKTtllrrll 26 
                 ++ +++v+G +G+GK+ ll+ l+
  CCE28670.1 662 RDELIAVIGTVGSGKSSLLAALA 684
                 56799*************99886 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.026
      AAA_22   10 vtGesGtGKTtllrrlleql 29  
                  ++G +G+GK+  + +l++  
  CCE28670.1 1275 IVGRTGAGKSSIMSTLFRLV 1294
                  89************999876 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.9
      AAA_22   81 aleqalraravielliiDEaqh.lrseealeeL.rsllnlsrkgvqliLvG 129 
                  al++al +    ++++ DEa   +  +e   ++ r+++    +  + +L++
  CCE28670.1 1415 ALARALVRN--SRIIVCDEATSsV-DMETDDKIqRTMAT--AFEGKTLLCI 1460
                  333444444..459*****98866.56655555444444..5555555555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0003      0.24      14      70 ..     661     718 ..     652     743 .. 0.71
   2 ?    3.8   0.1      0.04        31      21      50 ..    1275    1304 ..    1272    1308 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0003
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelhPeyeeilk...adpk 70 
                 +r  li + G  G+GKs+l+++l+ +++ ++g+vv       R++ P+y+ i++   ++  
  CCE28670.1 661 KRDELIAVIGTVGSGKSSLLAALAGDMRkTNGDVV---YGASRAFCPQYAWIQNttlQNNI 718
                 566788999******************84444444...34579999999988773333333 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.04
  Zeta_toxin   21 lgGqpGAGKselaellkdelerqgnvvrld 50  
                  ++G +GAGKs++++ l + +e  g+ +++d
  CCE28670.1 1275 IVGRTGAGKSSIMSTLFRLVEISGGSITID 1304
                  789**********99988887788888777 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00018      0.14      15      81 ..     630     697 ..     618     711 .. 0.83
   2 ?    1.7   0.0      0.23   1.8e+02      43      64 ..    1266    1287 ..    1240    1300 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
   IstB_IS21  15 aqktledidfraarsldkrkvkeLatlsf.iekkenivllGpsGvGKshlaialgveavraglsvlfv 81 
                 + ++ ed + +a++ +++r+  +L   +f i++ e i+++G  G GKs l +al+ +  +++  v++ 
  CCE28670.1 630 TANVEEDKEDTASTLVEEREPFQLHDINFkIKRDELIAVIGTVGSGKSSLLAALAGDMRKTNGDVVYG 697
                 556667777788888999999999999998999999*******************9998888888875 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.23
   IstB_IS21   43 fiekkenivllGpsGvGKshla 64  
                  +++  e i ++G +G+GKs + 
  CCE28670.1 1266 HVRGGERIGIVGRTGAGKSSIM 1287
                  57888999**********9875 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0012      0.95      17      59 ..     665     706 ..     651     716 .. 0.77
   2 ?    4.5   0.3     0.018        14      16      43 ..    1271    1298 ..    1257    1314 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0012
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairargdraivlDltGafvsrf 59 
                     i+++Gt+GsGK+  l +l   +r+ +   +v+ ++ af  ++
     CCE28670.1 665 LIAVIGTVGSGKSSLLAALAGDMRKTNG-DVVYGASRAFCPQY 706
                    4889****************99998765.46666666666666 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.018
  TrwB_AAD_bind   16 qhilivGttGsGKtqalekllrairarg 43  
                     + i ivG tG+GK+  ++ l r ++  g
     CCE28670.1 1271 ERIGIVGRTGAGKSSIMSTLFRLVEISG 1298
                     5699****************99887655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       5.7   4.4e+03       6      44 ..     282     321 ..     279     327 .. 0.63
   2 ?    7.5   0.0    0.0038       2.9      17      54 ..     662     699 ..     656     703 .. 0.85
   3 ?    7.1   0.1    0.0051         4      22      49 ..    1274    1301 ..    1264    1309 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.7
      AAA_30   6 Qaaave.alltsgdrvavltGpAGtGKttalkalreawea 44 
                 Q++av  a++ ++++v    + AG  K+ ++ ++++a ++
  CCE28670.1 282 QSRAVLiAFIYEKAMVLSGRAKAGDTKSLTIPGAEQANDD 321
                 6555541455556556666667788888888888777655 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0038
      AAA_30  17 gdrvavltGpAGtGKttalkalreaweaaggrviglAp 54 
                 +d + ++ G  G+GK+ +l+al+  +++ +g+v+  A+
  CCE28670.1 662 RDELIAVIGTVGSGKSSLLAALAGDMRKTNGDVVYGAS 699
                 5668899****************999999888887665 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0051
      AAA_30   22 vltGpAGtGKttalkalreaweaaggrv 49  
                   ++G+ G+GK+ ++++l +++e +gg++
  CCE28670.1 1274 GIVGRTGAGKSSIMSTLFRLVEISGGSI 1301
                  689***************9999998776 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0051         4       4      29 ..     664     689 ..     661     715 .. 0.84
   2 ?    5.1   0.0     0.025        20       6      25 ..    1273    1292 ..    1270    1304 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0051
  Ploopntkinase3   4 rliylvGqPGaGkstlmaeltkgfdr 29 
                      li ++G+ G+Gks l+a+l+  + +
      CCE28670.1 664 ELIAVIGTVGSGKSSLLAALAGDMRK 689
                     6899***************9876655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
  Ploopntkinase3    6 iylvGqPGaGkstlmaeltk 25  
                      i +vG  GaGks +m++l +
      CCE28670.1 1273 IGIVGRTGAGKSSIMSTLFR 1292
                      569*************9965 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   9.2e-05     0.072       1      21 [.     666     686 ..     666     694 .. 0.93
   2 ?    3.7   0.2     0.072        56       1      18 [.    1273    1290 ..    1273    1317 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.2e-05
                 EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlge 21 
                 iav+G++ sGKSS+l aL g+
  CCE28670.1 666 IAVIGTVGSGKSSLLAALAGD 686
                 89****************996 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.072
                  EEEEEBTTTTHHHHHHHH CS
   Dynamin_N    1 iavvGsqSsGKSSvlnaL 18  
                  i +vG + +GKSS++  L
  CCE28670.1 1273 IGIVGRTGAGKSSIMSTL 1290
                  789**********98776 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.018        14       2      35 ..     666     699 ..     665     720 .. 0.80
   2 ?    4.4   0.1     0.052        40       2      20 ..    1273    1291 ..    1272    1317 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.018
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEE CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvd 35 
                 + ++G  g+GK+sll  +  d  +++ +  +g++
  CCE28670.1 666 IAVIGTVGSGKSSLLAALAGDMRKTNGDVVYGAS 699
                 679****************999988888777776 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.052
                  EEEESSTTSSHHHHHHCHC CS
         Roc    2 vvlvGdsgvGKtsllkrfv 20  
                  + +vG +g+GK+s+++ + 
  CCE28670.1 1273 IGIVGRTGAGKSSIMSTLF 1291
                  779***********99876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0033       2.6       1      22 [.     666     687 ..     666     737 .. 0.75
   2 ?    2.1   0.5      0.35   2.7e+02       1      21 [.    1273    1293 ..    1273    1314 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0033
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 I++ Gt G+GK++l  +L+  +
  CCE28670.1 666 IAVIGTVGSGKSSLLAALAGDM 687
                 89***************95443 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.35
      AAA_18    1 IlltGtpGvGKttlakeLskr 21  
                  I++ G  G+GK+++   L ++
  CCE28670.1 1273 IGIVGRTGAGKSSIMSTLFRL 1293
                  89************9988665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.13     1e+02      30      59 ..     660     689 ..     643     696 .. 0.84
   2 ?    7.3   0.1     0.004       3.1      27      55 ..    1264    1292 ..    1260    1307 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.13
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkldk 59 
                 +k++  + ++G++G+GK++++  l   + k
  CCE28670.1 660 IKRDELIAVIGTVGSGKSSLLAALAGDMRK 689
                 667777899***********9988777765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.004
       AAA_7   27 elllknkkpvllvGptGtGKtviikdllk 55  
                  +++++ +  + +vG tG GK++i+++l++
  CCE28670.1 1264 SMHVRGGERIGIVGRTGAGKSSIMSTLFR 1292
                  67889999999*************99876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00045      0.35       2      35 ..     666     703 ..     665     739 .. 0.76
   2 ?   -1.2   0.3       2.7   2.1e+03       1      20 [.    1272    1291 ..    1272    1300 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00045
      AAA_28   2 ivitGgestGKTtlleaLa....argypvvpEaareil 35 
                 i+++G+ ++GK++ll+aLa    +++  vv  a r ++
  CCE28670.1 666 IAVIGTVGSGKSSLLAALAgdmrKTNGDVVYGASRAFC 703
                 89*****************5432225556666666665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.7
      AAA_28    1 kivitGgestGKTtlleaLa 20  
                  +i i+G  ++GK+++++ L 
  CCE28670.1 1272 RIGIVGRTGAGKSSIMSTLF 1291
                  577999**********9985 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.012       9.4       5      55 ..     642     689 ..     639     696 .. 0.83
   2 ?   -3.8   0.3       6.5   5.1e+03     206     254 ..     854     902 ..     841     908 .. 0.74
   3 ?    6.3   0.2    0.0051         4      21      58 ..    1262    1299 ..    1248    1311 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.012
                 HHHHH--SHHHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHC CS
        MeaB   5 itlveserpeakellerllakaGraqvvGltGvPGaGkstlvealglelrr 55 
                  tlve+++p     l+ +  k  r + + + G+ G+Gks l+ al+  +r+
  CCE28670.1 642 STLVEEREPFQ---LHDINFKIKRDELIAVIGTVGSGKSSLLAALAGDMRK 689
                 68888888843...77888889999********************988876 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.5
                 EEEEEBCCCTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH CS
        MeaB 206 kvlktsavegeGidelvdaieehrevlkktGllekrrrerakeelrelv 254
                  +++t+a e +G d+   + ee  e+l+   l ++r++ ra+++  +l+
  CCE28670.1 854 VLMETTAIEEKGADKSDGEEEEQEEALQPVDLADERKKRRANKKGAALM 902
                 5678889999999998888888889998888888888877766655544 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0051
                  HHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT- CS
        MeaB   21 rllakaGraqvvGltGvPGaGkstlvealglelrrrGk 58  
                   l+ +    +++G+ G  GaGks +++ l   +   G 
  CCE28670.1 1262 GLSMHVRGGERIGIVGRTGAGKSSIMSTLFRLVEISGG 1299
                  5555566678*****************99877666665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.4       5.3   4.2e+03      93     113 ..     324     344 ..     303     360 .. 0.60
   2 ?    9.0   0.0    0.0024       1.8       9      39 ..     650     683 ..     648     685 .. 0.90
   3 ?    7.8   0.1    0.0054       4.2      24      37 ..    1275    1288 ..    1272    1292 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 5.3
      AAA_23  93 erelskkkgkttkkaklelle 113
                 + ++skkk+k+ kk k+++le
  CCE28670.1 324 TGKTSKKKNKKNKKGKKDKLE 344
                 333333333333333333333 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0024
      AAA_23   9 sfrdqeidF...skgltlItGpNGaGKTTildAi 39 
                 +f+  +i+F    + l +++G  G+GK+++l A+
  CCE28670.1 650 PFQLHDINFkikRDELIAVIGTVGSGKSSLLAAL 683
                 57777899999989*******************8 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0054
      AAA_23   24 ItGpNGaGKTTild 37  
                  I+G +GaGK++i+ 
  CCE28670.1 1275 IVGRTGAGKSSIMS 1288
                  9***********95 PP

>> SPC25  Microsomal signal peptidase 25 kDa subunit (SPC25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.36   2.8e+02      74     135 ..     286     344 ..     261     351 .. 0.75
   2 ?    6.7   0.3    0.0076       5.9      17      66 ..    1031    1079 ..    1000    1087 .. 0.82
   3 ?   -2.9   0.2       6.7   5.2e+03       3      66 ..    1130    1187 ..    1129    1199 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.36
       SPC25  74 tlystfvekntifvgkrktgskriekitissslkklsptytltvsykdksnkgkslkakele 135
                  l++   ek +++ g+ k g +  +++ti    + ++++ t + s+k++++++k +k k le
  CCE28670.1 286 VLIAFIYEKAMVLSGRAKAGDT--KSLTIPGAEQANDDEKTGKTSKKKNKKNKKGKKDK-LE 344
                 46777899*******9999965..58888888888888888888887777665444444.55 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0076
       SPC25   17 lgfkeshtltdvrLalGylavaiaavaflydykveFeeskpvlaiavvlY 66  
                     + +++ + +r+++ ++a++ia++a+++ y +++ +   v + +++++
  CCE28670.1 1031 VDVTDNNLADAIRIFFLTVAMVIAIFALIIAY-FPWFAIALVPLSCLFVF 1079
                  36888999999*********************.58877766666666655 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 6.7
       SPC25    3 KntlDdalkeyltdlgfkeshtltdvrLalGylavaiaavaflydykveFeeskpvlaiavvlY 66  
                  + ++D+  + y+   +f  + ++  +rL l  +a+++++++++++    F+ + p +  +v+ Y
  CCE28670.1 1130 RDAIDEMDSAYFL--TF-SNQRWLSLRLDLVGIAFVFTVAILVVTS--RFNVN-PSISGLVLSY 1187
                  6666666667766..44.4567778999998888888888888877..45554.3344445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1289  (0.0718947); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 1.16u 0.32s 00:00:01.48 Elapsed: 00:00:00.46
# Mc/sec: 9881.05
//
Query:       CCE28671.1  [L=208]
Description: probable CSL4-core component of the 3`-5` exosome [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-18   66.9   5.5    1.3e-13   51.5   0.2    2.3  2  EXOSC1    Exosome component EXOSC1/CSL4
    1.1e-09   37.9   0.2    2.3e-09   36.9   0.2    1.6  1  ECR1_N    Exosome complex exonuclease RRP4 N-terminal region


Domain annotation for each model (and alignments):
>> EXOSC1  Exosome component EXOSC1/CSL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   1.3   4.8e-07    0.0043       1      29 [.      84     112 ..      84     118 .. 0.90
   2 !   51.5   0.2   1.4e-17   1.3e-13      70     109 .]     116     155 ..     112     155 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.8e-07
                 -S-TT-EEEEEEEEEESSEEEEEEEEECT CS
      EXOSC1   1 lPkegdvVLarvtrlrkkqalveilsveg 29 
                 lP++++vVLarv+rl  kqa+v i  v +
  CCE28671.1  84 LPDVQNVVLARVVRLMPKQAIVVIQQVGD 112
                 8*********************9998855 PP

  == domain 2  score: 51.5 bits;  conditional E-value: 1.4e-17
                 T.SEEEEEECCCTECCSSSTT-GGCTEECTTEEEEEEEEC CS
      EXOSC1  70 getfkaiirsqdvRatekdrvkviemfrpGDIvraqviSl 109
                 + + +++ir qdvRatekd+vk+ e+f+pGDIv+aqviSl
  CCE28671.1 116 QTEWQGVIRVQDVRATEKDKVKIHESFKPGDIVKAQVISL 155
                 56789**********************************8 PP

>> ECR1_N  Exosome complex exonuclease RRP4 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.2   2.6e-13   2.3e-09       2      37 ..      10      45 ..       9      46 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 2.6e-13
                E-TT-EEEETTTSEE-TTEEEETTEEEESSSEEEEE CS
      ECR1_N  2 VtPGevlttdeefmrGhGTYvrggtiyAsvaGtvev 37
                ++PG++l++++++++G+GT++++ ++ +s++G v++
  CCE28671.1 10 AIPGQILGPSSKYLAGPGTHIYQDSVASSILGRVTI 45
                79********************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1589.49
//
Query:       CCE28672.1  [L=311]
Description: uncharacterized protein CPUR_02360 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 2054.38
//
Query:       CCE28673.1  [L=83]
Description: uncharacterized protein CPUR_02361 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 690.01
//
Query:       CCE28674.1  [L=255]
Description: related to TFIID and SAGA subunit TAF61 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-12   44.8   5.9      9e-12   44.8   5.9    2.2  2  Sec2p          GDP/GTP exchange factor Sec2p
  ------ inclusion threshold ------
      0.015   14.8   6.6        0.3   10.6   0.5    2.2  2  Exonuc_VII_L   Exonuclease VII, large subunit
      0.023   14.4   0.9      0.052   13.3   0.9    1.5  1  DUF1845        Domain of unknown function (DUF1845)
      0.026   14.5  10.4      0.031   14.3  10.4    1.1  1  TFIIA          Transcription factor IIA, alpha/beta subunit
      0.031   13.9   3.3       0.53    9.9   0.1    2.3  2  DUF4795        Domain of unknown function (DUF4795)
        0.1   12.8  17.3       0.58   10.4   9.1    2.1  2  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
       0.16   12.2   0.5       0.16   12.2   0.5    3.8  3  ABC_tran_CTD   ABC transporter C-terminal domain
       0.23   11.6  12.2        1.5    9.0   1.5    3.1  2  HR1            Hr1 repeat
       0.23   12.1   7.4       0.29   11.8   0.1    2.2  2  YabA           Initiation control protein YabA
       0.31   10.1  10.9        4.4    6.3   6.7    2.2  2  Atg14          Vacuolar sorting 38 and autophagy-related subu
       0.53   10.1   7.3       0.21   11.4   0.6    2.5  2  DivIC          Septum formation initiator
       0.92    9.7   6.3        5.3    7.2   1.7    3.0  2  MbeD_MobD      MbeD/MobD like
        2.5    8.6  11.1        1.8    9.0   0.2    2.8  2  DUF4140        N-terminal domain of unknown function (DUF4140
        2.9    8.6  18.1          3    8.5   2.2    3.0  3  SlyX           SlyX
        3.5    8.2  11.7         13    6.4   0.4    3.2  2  BMFP           Membrane fusogenic activity
        3.8    7.9  14.1         27    5.2   9.9    2.3  2  DUF4200        Domain of unknown function (DUF4200)
        5.2    5.6   6.1         17    3.9   2.6    2.0  2  FapA           Flagellar Assembly Protein A
        6.5    5.5  14.8        2.2    7.1   0.6    2.1  2  Spc7           Spc7 kinetochore protein
        7.3    5.9  13.5         22    4.2  13.5    1.7  1  DUF4407        Domain of unknown function (DUF4407)
        7.6    6.6  16.3        2.1    8.4   1.5    2.5  2  TPR_MLP1_2     TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.7      0.34   3.1e+02      40      83 ..      49      92 ..      42     102 .. 0.69
   2 !   44.8   5.9     1e-14     9e-12       2      70 ..     172     240 ..     171     248 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.34
                HHHHHHHHHHHHHHHHHHHHTTHCHCCCHCTSSSSHHHHCTTTX CS
       Sec2p 40 aarkekealekkneklkeqLkeketlleslqeqLkeLkevlekm 83
                +a+ + ++le + ++l+++ + + +  ++ +++L++L++   + 
  CCE28674.1 49 QAQSRIAQLEAQVTELNAKAASTVSRWADYEAELQKLRSTAPQP 92
                56666677777777888888888888888888888888766555 PP

  == domain 2  score: 44.8 bits;  conditional E-value: 1e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHCHCCCHCT CS
       Sec2p   2 lkeekkkreeaekekkklekEledLtasLFeeANkmVaaarkekealekkneklkeqLkeketlleslq 70 
                 l+ e++ r+eae   ++  kE+e+L+ sLFe+AN+mVa++r+ +++le++  +l+++ kek++ le l+
  CCE28674.1 172 LSREQTLRREAEGRLSATSKEVEELSVSLFEQANEMVADERRARARLEERVGELERRDKEKKKRLERLE 240
                 6789999********************************************************999876 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.9     0.003       2.6     180     271 ..      42     132 ..      22     150 .. 0.60
   2 ?   10.6   0.5   0.00033       0.3     152     222 ..     174     245 ..     153     255 .] 0.74

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.003
  Exonuc_VII_L 180 speellerkrqrldeleerleralkkqlkkkrerleelkerl.k.ekleekkerlkklkerlelleekkerleeleeklealsplkvLkrGyai 271
                   s++ ll+++++r+ +le+++++ l+ ++++  +r+  ++++l k +  ++ + +  +++++ ++ ++ +++ +   ++ ++ sp ++L++G + 
    CCE28674.1  42 SADLLLRQAQSRIAQLEAQVTE-LNAKAASTVSRWADYEAELqKlR-STAPQPQPPQQQQQQQRPSTPRHQ-TDPPTTTQQFSPPSILQQGTSR 132
                   4555777778888888888877.77777777777777776663331.111121222222222222333333.2345566777777777777665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00033
  Exonuc_VII_L 152 lerrlekaikrlleekkqrleklasrl.kspeellerkrqrldeleerleralkkqlkkkrerleelkerl.k 222
                    e+ l+++++ +l+  ++++e+l+ +l ++++e+++++r++  +leer+ + l+++ k+k++rle+l+ ++ +
    CCE28674.1 174 REQTLRREAEGRLSATSKEVEELSVSLfEQANEMVADERRARARLEERVGE-LERRDKEKKKRLERLEGAMgR 245
                   467788888888888888888888888458888888888888888888888.888888888888888866543 PP

>> DUF1845  Domain of unknown function (DUF1845)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.9   5.8e-05     0.052      53     107 ..      36      91 ..      19      98 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.8e-05
     DUF1845  53 asaddPYAdaaLlkleekleeareelqklleeleallee.lpkglslselasssPl 107
                 a++d P Ad +L +++++++++++++++l +++  +++  ++   +l++l+s++P 
  CCE28674.1  36 AQEDAPSADLLLRQAQSRIAQLEAQVTELNAKAASTVSRwADYEAELQKLRSTAPQ 91 
                 799************************************9**************96 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3  10.4   3.5e-05     0.031     112     304 ..      27     221 ..       3     249 .. 0.33

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.5e-05
       TFIIA 112 taatfslpakleppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqqvvqq.............sqgsaaqssvaalqaq.sqqaqalaepqqqle 196
                 t +t ++p+++e      a +                ++aq+++aq  +qv++               +++ ++   +a+q+q +qq+q++ +      
  CCE28674.1  27 TITTSDPPIAQED--APSADL--------------LLRQAQSRIAQLEAQVTELnakaastvsrwadYEAELQKLRSTAPQPQpPQQQQQQQR------ 103
                 3333333333333..111122..............2334555555555555331110110000011122222222222222221122111111...... PP

       TFIIA 197 kqqqqqqqqqqqqqqqqvqqqqqe.................esqqaqqasqe...........qvag.sqvessqtdgaedaleeespv.legelsaee 265
                         + ++ +q+   +++q+                           +           ++++ + ++s+   + ed +e    +  + + +++e
  CCE28674.1 104 --------PSTPRHQTDPPTTTQQfsppsilqqgtsrisslL---------YprkstlnlrrvDMPPaPPPTSPGGASTEDLME----AlSREQTLRRE 181
                 ........1222222211222222344444333333343331.........033333333433333322222222222222222....22344444444 PP

       TFIIA 266 eagaqkeelsreeidri.re..ealkakelekeskkkkr.aee 304
                 ++g  +  ++++e++++  +  e + ++++++e+++++r +e+
  CCE28674.1 182 AEGRLS--ATSKEVEELsVSlfE-QANEMVADERRARARlEER 221
                 444432..233333333222331.2233333333333332222 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00059      0.53       8      49 ..      46      87 ..      37      93 .. 0.88
   2 ?    4.4   0.6     0.027        24       8      56 ..     200     248 ..     165     251 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00059
     DUF4795  8 llkklqeaieklqeelekleekvkelekrledkekklealkk 49
                ll + q+ i +l++++ +l+ k++++ +r +d+e +l+ l++
  CCE28674.1 46 LLRQAQSRIAQLEAQVTELNAKAASTVSRWADYEAELQKLRS 87
                488999******************************999986 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.027
     DUF4795   8 llkklqeaieklqeelekleekvkelekrledkekklealkkqieelek 56 
                 l+++ +e++ +  +  ++lee+v ele r ++k+k le l+ ++ + ek
  CCE28674.1 200 LFEQANEMVADERRARARLEERVGELERRDKEKKKRLERLEGAMGRIEK 248
                 3666677777778888889999999999999999999999877766665 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.1    0.0049       4.4      75     126 ..      49      99 ..      42     118 .. 0.54
   2 ?   10.4   9.1   0.00064      0.58      59     137 ..     165     240 ..     162     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0049
  Jnk-SapK_ap_N  75 raeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleeke 126
                    +a+ ++ ++e q+ e + +  + v++  + + el+ k++++a q +  ++++
     CCE28674.1  49 QAQSRIAQLEAQVTELNAKAASTVSRWADYEAELQ-KLRSTAPQPQPPQQQQ 99 
                    44444444444444444444444444444444444.4444444444444444 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00064
  Jnk-SapK_ap_N  59 leqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklh 137
                    +e+L + ++re+ lr++ae +l  + +++ee    l e+ +++  ++r+       +++++ +le++++e kk+ ++l+
     CCE28674.1 165 TEDLMEALSREQTLRREAEGRLSATSKEVEELSVSLFEQANEMVADERRAR---ARLEERVGELERRDKEKKKRLERLE 240
                    7999**********************************************9...7788889999999888888877765 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   0.00018      0.16      12      46 ..      49      85 ..      45      91 .. 0.77
   2 ?   -0.1   0.3       1.3   1.1e+03      30      53 ..     171     196 ..     163     206 .. 0.54
   3 ?    1.9   3.3      0.29   2.6e+02       5      22 ..     231     248 ..     209     255 .] 0.54

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00018
  ABC_tran_CTD 12 eleaeIeaLEeeiaeleaeladpely.sdp.eklael 46
                  +  ++I++LE++ +el+a+ a+     +d+ ++l++l
    CCE28674.1 49 QAQSRIAQLEAQVTELNAKAASTVSRwADYeAELQKL 85
                  66789*************9997765556665556655 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.3
  ABC_tran_CTD  30 eladpelysdp..eklaelsaeleel 53 
                   +l+ ++   ++   +l+++s+e eel
    CCE28674.1 171 ALSREQTLRREaeGRLSATSKEVEEL 196
                   44444444333234456666666655 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.29
  ABC_tran_CTD   5 keqreleeleaeIeaLEe 22 
                    ++++le+le  + ++E+
    CCE28674.1 231 EKKKRLERLEGAMGRIEK 248
                   234445555555555555 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.5    0.0018       1.6      40      64 ..      43      67 ..      37      71 .. 0.90
   2 ?    9.0   1.5    0.0017       1.5      20      66 ..     166     209 ..     163     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0018
         HR1 40 aeselsesnskielLreqLeelqas 64
                a++ l+ ++s+i++L+ q  el+a+
  CCE28674.1 43 ADLLLRQAQSRIAQLEAQVTELNAK 67
                8899*******************94 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0017
         HR1  20 enllraleskktqnkkvrqeaeselsesnskielLreqL.eelqasvq 66 
                 e l++al+      + +r+eae +ls  ++++e+L  +L e+ + +v 
  CCE28674.1 166 EDLMEALS----REQTLRREAEGRLSATSKEVEELSVSLfEQANEMVA 209
                 66777744....67789******************9999888888765 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00032      0.29      11      65 ..      48     102 ..      44     113 .. 0.76
   2 ?    2.6   2.8      0.24   2.2e+02      19      73 ..     185     239 ..     166     248 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....XXXXXXXXXXXXX CS
        YabA  11 eeleeqleelleeleelkeelaelleenaeLeleneklrerl.....eeeekkekekkke 65 
                 ++ ++++++l ++++el+++ a+++ + a+ e+e +klr++            +++++++
  CCE28674.1  48 RQAQSRIAQLEAQVTELNAKAASTVSRWADYEAELQKLRSTApqpqpP-----QQQQQQQ 102
                 677899***********************************9543321.....2222222 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXX CS
        YabA  19 elleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegkenL 73 
                 +l+++ +e++e  ++l+e+ +e+ ++ ++ r rlee+  + ++++ke+++  e L
  CCE28674.1 185 RLSATSKEVEELSVSLFEQANEMVADERRARARLEERVGELERRDKEKKKRLERL 239
                 3444555666667788999999999999999999655555555555544444444 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.006       5.3      77     135 ..      48     106 ..       8     148 .. 0.71
   2 ?    6.3   6.7    0.0049       4.4      29     111 ..     166     243 ..     163     254 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.006
       Atg14  77 adlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiak 135
                 ++ ++r+++l++++++l+++ + +  + a + ++l k rs++   q   ++ +++  ++
  CCE28674.1  48 RQAQSRIAQLEAQVTELNAKAASTVSRWADYEAELQKLRSTAPQPQPPQQQQQQQRPST 106
                 56677777777777777777777777777777777777777666665555555554444 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0049
       Atg14  29 erlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksli.adlrerlqelkdklsqlkkeieekkkklaklsdkl 111
                 e+l+  +s+ ++l+++ e  l+ ++      ++++ ++ +l e+ +++ ad r+  ++l++++ +l ++ +ekkk+l++l  ++
  CCE28674.1 166 EDLMEALSREQTLRREAEGRLSATS------KEVEELSVSLFEQANEMvADERRARARLEERVGELERRDKEKKKRLERLEGAM 243
                 789999*******************......889999999888877751666777999********************997665 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   0.00024      0.21      14      52 ..      49      87 ..      45      90 .. 0.90
   2 ?    1.7   1.1      0.25   2.2e+02      23      53 ..     212     242 ..     186     252 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
                XXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC 14 kgllaykqlkqeiaalqaelaklkaeneeLeaevkdLks 52
                + ++++ ql++++++l+a+ a+   + ++ eae+++L+s
  CCE28674.1 49 QAQSRIAQLEAQVTELNAKAASTVSRWADYEAELQKLRS 87
                5678999******************************75 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHHHHHHHHHHCC-XXX CS
       DivIC  23 kqeiaalqaelaklkaeneeLeaevkdLksd 53 
                 ++ +a+l++ + +l  + +e ++++++L+  
  CCE28674.1 212 RRARARLEERVGELERRDKEKKKRLERLEGA 242
                 5567788888888888888888888888654 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.071        64      48      64 ..      51      67 ..      36      88 .. 0.69
   2 ?    7.2   1.7     0.006       5.3      28      68 ..     199     239 ..     169     241 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.071
   MbeD_MobD 48 seqvtgLsqQVesLseq 64
                + ++ +L  QV +L+ +
  CCE28674.1 51 QSRIAQLEAQVTELNAK 67
                45666666666666543 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.006
   MbeD_MobD  28 safaelqrmfeltqrenaaLseqvtgLsqQVesLseqvrRl 68 
                 s f++  +m+  ++r +a L+e+v +L +  ++  ++++Rl
  CCE28674.1 199 SLFEQANEMVADERRARARLEERVGELERRDKEKKKRLERL 239
                 56899999*******************99998888888887 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2     0.002       1.8      40      94 ..      18      74 ..      14      86 .. 0.70
   2 ?    1.6   6.1      0.43   3.8e+02      39      91 ..     178     239 ..     148     253 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.002
     DUF4140 40 rVegaga.atildvqvervpnreaeeee.lkalraeleeledelaaledelaaaear 94
                 +  +++ ati+  +    +++ + ++  l+++++++ +le++ ++l++++a+  +r
  CCE28674.1 18 NIPPTNTtATITTSDPPIAQEDAPSADLlLRQAQSRIAQLEAQVTELNAKAASTVSR 74
                555444446777666666666666666458888888888888888888888776655 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.43
     DUF4140  39 lrVegagaatildvqver..vpnreaeee.......elkalraeleeledelaaledelaaa 91 
                 lr e++g++  ++ +ve+  v   e+++e       + ++l++++ ele++ ++ +++l+++
  CCE28674.1 178 LRREAEGRLSATSKEVEElsVSLFEQANEmvaderrARARLEERVGELERRDKEKKKRLERL 239
                 55554444333333333311333333333444446524444444444444444444444433 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.3     0.038        34       9      64 ..      51     104 ..      46     114 .. 0.72
   2 ?   -0.6   0.0       2.4   2.2e+03      17      41 ..     167     187 ..     163     200 .. 0.42
   3 ?    8.5   2.2    0.0033         3       9      57 ..     183     232 ..     180     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXX CS
        SlyX   9 EiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgaseaeeepP 64 
                 ++++a +e ++ eLn+  a    + +  +++l++l+    + ++ ++++++  ++P
  CCE28674.1  51 QSRIAQLEAQVTELNAKAASTVSRWADYEAELQKLRSTAPQPQPPQQQQQQ--QRP 104
                 789**********************************99554444443332..222 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX  17 dtieeLndvvaeqqqqidrlqrqlr 41 
                 d++e+    + + q    + + +l 
  CCE28674.1 167 DLMEA----LSREQTLRREAEGRLS 187
                 33333....3333333333333333 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0033
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHT-XXXXXXXXXX CS
        SlyX   9 EiklafqedtieeLndvvaeqqqqidrlqrql.rllaerlkeleessgas 57 
                 E +l+ + + +eeL+  ++eq+ ++ + +r+  ++l+er+ ele +++++
  CCE28674.1 183 EGRLSATSKEVEELSVSLFEQANEMVADERRArARLEERVGELERRDKEK 232
                 8899999999***********99987666555157999999999987755 PP

>> BMFP  Membrane fusogenic activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.4     0.014        13      57      76 ..      46      65 ..      38      66 .. 0.90
   2 ?    3.9   5.3     0.082        74      51      76 ..     201     226 ..     165     227 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.014
        BMFP 57 vlartrekleaLearvaaLE 76
                +l +++ ++++Lea+v++L 
  CCE28674.1 46 LLRQAQSRIAQLEAQVTELN 65
                68899*************97 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.082
        BMFP  51 FdvqrevlartrekleaLearvaaLE 76 
                 F+   e++a  r + ++Le+rv +LE
  CCE28674.1 201 FEQANEMVADERRARARLEERVGELE 226
                 99999********************9 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.043        39      71     106 ..      50      85 ..      37      90 .. 0.62
   2 ?    5.2   9.9      0.03        27      28     100 ..     181     254 ..     164     255 .] 0.71

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.043
     DUF4200  71 erklkkekeaeikklkaeietlkseiekleekleey 106
                  + ++ + ea++ +l+a+ +   s+ + +e++l+++
  CCE28674.1  50 AQSRIAQLEAQVTELNAKAASTVSRWADYEAELQKL 85 
                 444555555555555555555556666666666655 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.03
     DUF4200  28 alkqreeelekkeqeleedl.lkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekle 100
                 +++ r  ++ k+ +el  +l ++ ++++ +  + rar ++++ e +++ kek++ +++l+  + ++++ ++ le
  CCE28674.1 181 EAEGRLSATSKEVEELSVSLfEQANEMVADERRARARLEERVGELERRDKEKKKRLERLEGAMGRIEKARHLLE 254
                 33333334444444444444466799999999999999999999999999999999999999999999888776 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.031        27     332     381 ..      54     102 ..      24     109 .. 0.62
   2 ?    3.9   2.6     0.019        17     355     419 ..     188     248 ..     162     254 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.031
        FapA 332 epelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlk 381
                   +l ++++el+ +  ++ ++  +++++++kl++++ ++q ++++++q++
  CCE28674.1  54 IAQLEAQVTELNAKAASTVSRWADYEAELQKLRSTAPQPQ-PPQQQQQQQ 102
                 2333444444444444445555555555999999555555.555555444 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.019
        FapA 355 klkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeea.kikv 419
                    k++++l     +  l ++  e+++  ++++ +l+e++ ele++ ke k++le+ +++  +i+ 
  CCE28674.1 188 ATSKEVEEL-----SVSLFEQANEMVADERRARARLEERVGELERRDKEKKKRLERLEGAMgRIEK 248
                 222222222.....3456666778888888888999999999999999999999999544445554 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.6    0.0024       2.2     212     256 ..      44      88 ..      34     105 .. 0.64
   2 ?    3.1   7.7     0.041        37     179     247 ..     168     240 ..     162     255 .] 0.34

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0024
        Spc7 212 kaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaerv 256
                 +  +++ + ++a+l++q++el++k +++ ++ +++e+e+++ +++
  CCE28674.1  44 DLLLRQAQSRIAQLEAQVTELNAKAASTVSRWADYEAELQKLRST 88 
                 445556666666666666666666666666666666666665544 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.041
        Spc7 179 leeeleklqeaaeeles...idkeeLeelreelaelkaeie.ekkkelaelqeqleeleekieelkeqksele 247
                 l+e l ++q+ ++e e     +++e+eel  +l e+ +e+    ++  a+l+e++ ele + +e k++ ++le
  CCE28674.1 168 LMEALSREQTLRREAEGrlsATSKEVEELSVSLFEQANEMVaDERRARARLEERVGELERRDKEKKKRLERLE 240
                 4555555554333333222233444444444444444443202222222222222222222222222222221 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  13.5     0.025        22     130     251 ..      44     250 ..      23     255 .] 0.66

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.025
     DUF4407 130 a.....ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk.....gtgttgvaGkgpaake............................... 187
                 +     +++++a+leaq+++l+a+ ++  +r+++ +ae+qk  + ++     +++ ++ +   p   +                               
  CCE28674.1  44 DlllrqAQSRIAQLEAQVTELNAKAASTVSRWADYEAELQKLRSTAPqpqppQQQQQQQRPSTP---Rhqtdpptttqqfsppsilqqgtsrissllyp 139
                 04444499********************************999998866666222222233333...145588889999******************** PP

     DUF4407 188 ...................................kkaqldaaqaelaelkakld..............atarlaalraelaeleaerakeraasqaaa 237
                                                     ++   +a+ +l + +++++              a++r  ++ra+l+e   e++++ ++++++ 
  CCE28674.1 140 rkstlnlrrvdmppappptspggastedlmealsrEQTLRREAEGRLSATSKEVEelsvslfeqanemvADER--RARARLEERVGELERRDKEKKKRL 236
                 ***********************97777666666533333333333333333333777777777444332222..223333333344444445555555 PP

     DUF4407 238 aaddGllarleald 251
                 +   G + r+e   
  CCE28674.1 237 ERLEGAMGRIEKAR 250
                 55555555555444 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.5    0.0023       2.1      67     103 ..      48      84 ..      43      93 .. 0.81
   2 ?    2.9   7.4      0.12   1.1e+02      63     114 ..     187     238 ..     164     253 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0023
  TPR_MLP1_2  67 nelkaeiaelkaeaesakaeleeseesweeqkeelek 103
                  +++++ia+l+a++ +++a+ +   + w+  + el+k
  CCE28674.1  48 RQAQSRIAQLEAQVTELNAKAASTVSRWADYEAELQK 84 
                 5788889999999999999999999999888888887 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.12
  TPR_MLP1_2  63 reelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekried 114
                  + ++e+++   +l ++a++  a+  ++++ +ee+  ele++ +e +kr+e 
  CCE28674.1 187 SATSKEVEELSVSLFEQANEMVADERRARARLEERVGELERRDKEKKKRLER 238
                 2233344444444444555555555555555555555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2046  (0.114117); expected 358.6 (0.02)
Passed bias filter:                      860  (0.047967); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.51
# Mc/sec: 1496.10
//
Query:       CCE28675.1  [L=478]
Description: related to pseudouridine synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-43  149.0   0.0    2.4e-43  148.1   0.0    1.4  1  TruB_N    TruB family pseudouridylate synthase (N terminal do
    3.8e-05   23.7   0.0    7.5e-05   22.8   0.0    1.5  1  TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain


Domain annotation for each model (and alignments):
>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   0.0   2.7e-47   2.4e-43       5     134 ..      67     198 ..      59     208 .. 0.90

  Alignments for each domain:
  == domain 1  score: 148.1 bits;  conditional E-value: 2.7e-47
                 T-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE--------------- CS
      TruB_N   5 kakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvppmySAvkvnGk 103
                 ++ k+Gh+GtLDplatGvL++++g aTkll ++l+ +K+Ye+ + +g++t+t+D++g++l+++ ++++t+e++e+ l++f+G+++q+pp ySA+k++Gk
  CCE28675.1  67 SQVKIGHGGTLDPLATGVLILGIGAATKLLPQFLHCTKTYETIVVFGVSTSTYDRTGTVLARKGYDHVTKEMVEKELESFRGKQMQIPPLYSALKMDGK 165
                 456***********************************************************99*********************************** PP

                 ----------------..--EEEEEEEEEEEEE CS
      TruB_N 104 rlyelaregeeverkk..rkvtiyelellevee 134
                 +ly +areg+ + r+   r+v+  e+el+e+ e
  CCE28675.1 166 PLYMYAREGKPIPREIegRQVEALEVELVEWYE 198
                 *********999877633666666677777765 PP

>> TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   8.4e-09   7.5e-05       1      31 [.     336     366 ..     336     391 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 8.4e-09
                 HHHHHHHHHHTTS-EEEEEEEEEEETTEGG- CS
    TruB_C_2   1 RtLcdDiGeaLgcgAhveeLRRtrvgpfdee 31 
                 R  c+D+G +Lg  A ++eL R+r ++f+  
  CCE28675.1 336 RCFCHDLGTKLGSAATMAELCRVRQSDFTVG 366
                 678************************9543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3378.37
//
Query:       CCE28676.1  [L=691]
Description: uncharacterized protein CPUR_02364 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   14.7   0.0      0.048   13.7   0.0    1.5  1  DNMT1-RFD  Cytosine specific DNA methyltransferase replicatio


Domain annotation for each model (and alignments):
>> DNMT1-RFD  Cytosine specific DNA methyltransferase replication foci domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.7e-06     0.048      78     119 ..     113     152 ..      82     178 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.7e-06
                 SSSSBEEEEEEESS-EEEE-SB-TTTHHHHHHHHHHHHHHHH CS
   DNMT1-RFD  78 degekalivlsTetadYkLlkPsaeYapiyekviekarlsve 119
                 ++g ++li++s +  +Y++ +P  +Y+piy+k+ e   + + 
  CCE28676.1 113 EDG-RPLIWVSGQGGWYEI-EPCRAYKPIYAKMCEATTMYYT 152
                 366.49************8.8************997776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 5193.88
//
Query:       CCE28677.1  [L=864]
Description: related to cap binding protein 80 (Cbp80) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-85  283.2   0.1    1.4e-84  282.6   0.1    1.3  1  MIF4G_like    MIF4G like
    1.9e-70  237.4   0.0    3.5e-70  236.5   0.0    1.4  1  MIF4G_like_2  MIF4G like


Domain annotation for each model (and alignments):
>> MIF4G_like  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.6   0.1   1.6e-88   1.4e-84       1     191 []     346     536 ..     346     536 .. 1.00

  Alignments for each domain:
  == domain 1  score: 282.6 bits;  conditional E-value: 1.6e-88
  MIF4G_like   1 Pdasslaavllrdilvdvinllevnrkeaakllldldlyltkktfalratsvdklkdldppestwkledvvveavlsellqlptpekklvyyhslltei 99 
                 P++ss+aa+l+rd+l+d in+l++nr+++a++l+d+d y+   tf++rat++d+l+++ p++stwk+edv+v+av+s+l+qlp++e+k+vyyhs+lte+
  CCE28677.1 346 PPPSSIAASLIRDALADSINVLHFNRNVTARFLMDIDSYFADGTFVKRATPFDELRNMGPGKSTWKPEDVAVDAVFSQLFQLPKAEHKVVYYHSVLTEA 444
                 899************************************************************************************************ PP

  MIF4G_like 100 cklaPkavaPslGrairllyaalssldvelierfldWfshhlsnfgftWkWkeWvedvelpalhPrkvfikrviekeirlsyadriketlPd 191
                 cklaP+a+aPslGrair ly+++ + d+el  rfldWf+hhlsnfgftWkW eW ed++lp+lhP k f+ ++++keirls+a+ri++tlP+
  CCE28677.1 445 CKLAPAAIAPSLGRAIRYLYRNIPRTDLELSFRFLDWFAHHLSNFGFTWKWAEWAEDTSLPDLHPCKWFLLGALDKEIRLSFAQRIQKTLPE 536
                 *******************************************************************************************7 PP

>> MIF4G_like_2  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.5   0.0     4e-74   3.5e-70       1     266 [.     553     806 ..     553     807 .. 0.92

  Alignments for each domain:
  == domain 1  score: 236.5 bits;  conditional E-value: 4e-74
  MIF4G_like_2   1 fkyedeslPfaaeaqelldlirkkapaeevlelldeikesaeeegsieadpdslsidvfvqtllhvGskSlSHvlsaierykevLkel.aeseeara 96 
                   fky+d+++Pf++e+qel++l+++kap+e++++++d+i+++a+e++    dp ++s+dvf++++++ GskSlSHvl++i+r+k++L ++ ++s++ara
    CCE28677.1 553 FKYRDPDTPFSKEGQELAALLKRKAPDEDFQSVIDSIQAQATEQA---LDPIVTSTDVFMTAVCWAGSKSLSHVLACIDRTKTRLSDAaSSSPAARA 646
                   9****************************************8886...78999***********************************7777***** PP

  MIF4G_like_2  97 qileavmrfWknnpqmaiiivdkLlnyqivepasVvewifs.......keknegltrayvwEllkrtlskvnkrvkkvrqeleelkkkeeeekakee 186
                   q++++vm++W+++p++a++i++kLlny+i++p s+v+w++        ++++ +l +a+++El+ +t++kv++r   vr  l +  ++++       
    CCE28677.1 647 QVISSVMNYWSAHPGIALSIIEKLLNYSILTPLSIVDWTLGastpingTQGGAALGQAHMYELITNTVTKVSGR---VRLLLTSSASASA------- 733
                   ***********************************************9999***********************...9999955555533....... PP

  MIF4G_like_2 187 edkeeeeeleraeekleaaqkeqkelflivferlveilsesleeletsgseentevieewkkwwikrllkvflrkyavee 266
                        + + ++ e++ e++   +++lf++++++l++++s+s+++l ++g+ +  +++e+++++w++r+++vf r +a+ee
    CCE28677.1 734 -----SADGSDEEQTREKEIGGMRDLFRAINDALASWASGSKDQLMEEGDGS--SDREAMIRRWGQRWQRVFQRLAAIEE 806
                   .....44667789999*************************77775555544..4577*****************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.40
# Mc/sec: 6527.30
//
Query:       CCE28678.1  [L=394]
Description: probable glycogen synthase kinase 3 alpha [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-63  213.7   0.0    3.5e-63  213.5   0.0    1.0  1  Pkinase         Protein kinase domain
    3.9e-25   88.6   0.0    5.2e-25   88.2   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    5.1e-07   29.3   0.0    2.4e-06   27.1   0.0    1.9  2  Kinase-like     Kinase-like
     0.0024   17.8   0.1      0.015   15.3   0.0    2.2  3  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.052   13.1   0.0      0.079   12.5   0.0    1.3  1  Choline_kinase  Choline/ethanolamine kinase
      0.058   13.0   0.0       0.12   12.0   0.0    1.5  1  FTA2            Kinetochore Sim4 complex subunit FTA2
       0.16   11.3   0.0       0.26   10.6   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.5   0.0   1.4e-66   3.5e-63       1     264 []      35     318 ..      35     318 .. 0.89

  Alignments for each domain:
  == domain 1  score: 213.5 bits;  conditional E-value: 1.4e-66
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE....SSEEE..EEEE--TTEBHHHHHH... CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee....kdely..lvleyveggeladlle... 90 
                 y++ + +G+GsfG+V++ + + +g+  A+K++ ++k+ k+      rE++i++ ++hpniv+l+ ++++    kde+y  lv+e+v+++   ++ +   
  CCE28678.1  35 YTQCKIVGNGSFGVVFQTKISPSGEDAAIKRVLQDKRFKN------RELQIMRIVRHPNIVQLKAFYYSngdrKDEVYlnLVQEFVPETV-YRASRffn 126
                 678899****************************999883......69********************9999955555459******775.33333443 PP

                 .HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHH CS
     Pkinase  91 .rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslGvi 186
                   k++++  e+k +++q++++l+y+Hs+gi+HrD+Kp+N+L+d ++g lK++DFG ak l ++++  s++++++Y+APE++ ++++y++k+DvWs G++
  CCE28678.1 127 kMKSTMPTIEVKLYTYQLFRALAYIHSQGICHRDIKPQNLLLDpSTGILKLCDFGSAKILVENEPNVSYICSRYYRAPELIfGATNYTTKIDVWSTGCV 225
                 455669999**********************************99999*************************************************** PP

                 HHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT...SHH...HHHTTS.....................-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 187 lyelltgkppfsgekgkekvekeldqlekilkilg...etkeklpeasei.....................seeakdllkkllkkdpkkRltaeellqh 261
                 ++el+ g+p+f+   g++     +dql++i+k+lg      e++++ +                       + +a+dl+ +ll+++p++R +  + + h
  CCE28678.1 226 MAELMLGQPLFP---GES----GIDQLVEIIKVLGtptR--EQIRTMNPNymehkfpqikphpfnkvfrkaDAKAIDLIARLLEYTPTERQSSIDSMVH 315
                 ************...544....899*********97442..333322222558899999*********************************9999999 PP

                 GGG CS
     Pkinase 262 pyl 264
                 p++
  CCE28678.1 316 PFF 318
                 998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0     2e-28   5.2e-25       4     208 ..      38     238 ..      35     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 2e-28
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE....SSSS....EEEEEE--TTE..BHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct....keep....llivteyvkgG..dLlkf 91 
                   k +G+G+fG V++ +++     + ++ a+K + ++++ +      +e++im+ ++hpniv+l ++++    +  +    l +v e+v++     + f
   CCE28678.1  38 CKIVGNGSFGVVFQTKIS----PSGEDAAIKRVLQDKRFK-----NRELQIMRIVRHPNIVQLKAFYYsngdR--KdevyLNLVQEFVPETvyRASRF 124
                  5789*************9....788899****96666655.....57********************965542..15566889******995566789 PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHH CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksD 187
                   +k  k+++ + ++  +++q+ ++++y++s+ + Hrd+  +N Ll+  + + k++DfG a+ + +    + + +  ++  + apE ++  + +t+k D
   CCE28678.1 125 FNKM-KSTMPTIEVKLYTYQLFRALAYIHSQGICHRDIKPQNLLLDPsTGILKLCDFGSAKILVE---NEPNVSYICSRYYRAPELIFGATnYTTKID 218
                  9998.99999999********************************962669*********99933...34445566777788*****98766****** PP

                  HHHHHHHHHHHHTTSSGTTTT CS
  Pkinase_Tyr 188 vWsfGvllwEiftlgespypg 208
                  vWs G ++ E++  g+  +pg
   CCE28678.1 219 VWSTGCVMAELML-GQPLFPG 238
                  ***********97.7665554 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.28   7.2e+02      14      56 ..      35      77 ..      28      85 .. 0.80
   2 !   27.1   0.0   9.4e-10   2.4e-06     147     240 ..     138     226 ..     104     231 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.28
  Kinase-like 14 lvrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdl 56
                 + + +++++g ++vvf+ k    ge+ a+k  l  ++  +++l
   CCE28678.1 35 YTQCKIVGNGSFGVVFQTKISPSGEDAAIKRVLQDKRFKNREL 77
                 566789999******************9998887776555555 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 9.4e-10
  Kinase-like 147 lllTlqlirlaanLqakglvhgkftvdnllldekgg.lmlggftaLvr.agtkvvlseve.kgfaPpEllgsrggytrknktkmthkldaWqlGlvi 240
                  +l T ql r  a+++++g+ h +++++nllld+  g l+l +f++    + ++  +s ++ + +  pEl+           t++t k+d+W  G v+
   CCE28678.1 138 KLYTYQLFRALAYIHSQGICHRDIKPQNLLLDPSTGiLKLCDFGSAKIlVENEPNVSYICsRYYRAPELIFG--------ATNYTTKIDVWSTGCVM 226
                  56799***************************9755379****87543033344447777689999999866........489999******99885 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.29   7.5e+02      23      84 ..      61     121 ..      49     154 .. 0.69
   2 !   15.3   0.0   5.7e-06     0.015     165     187 ..     153     175 ..     120     185 .. 0.80
   3 ?   -3.2   0.0       2.5   6.5e+03      30      54 ..     342     365 ..     338     380 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.29
                 EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTB.S-EEETTEEEEEEE----EE-SS CS
         APH  23 yvlrrnpparaaeeirrevallrlLakagvpvPevlagd.tddeeigllfalieyvpgrsllr 84 
                  + +r+     +++  re++++r ++  ++   +++++   d+ ++ +l +++e+vp ++++ 
  CCE28678.1  61 AAIKRVLQD--KRFKNRELQIMRIVRHPNIVQLKAFYYSnGDRKDEVYLNLVQEFVPETVYRA 121
                 555555555..7788899999999998888444555555377788888999999999999887 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 5.7e-06
                 -EEEE-SS-SGGGEEEC..TTEE CS
         APH 165 ptvllHgDlhpgNllvdpddgrv 187
                 +++++H+D++p+Nll+dp  g +
  CCE28678.1 153 SQGICHRDIKPQNLLLDPSTGIL 175
                 689**************775544 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.5
                 TTS-HHHHHHHHHHHHHHHHTT-B- CS
         APH  30 paraaeeirrevallrlLakagvpv 54 
                 pa + +++r e+ +  +L+++ vp+
  CCE28678.1 342 PA-LFNFTRHELSIAPHLNAQLVPA 365
                 55.7788899999999999998843 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.1e-05     0.079      95     171 ..     108     180 ..      67     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.1e-05
                     HHHHHHHHCCS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHHHCHGG-EEEE-S--SGGGEEE.-CTTEEEE--G CS
  Choline_kinase  95 ktmqkwllnkeaqtkakkekkkkqlklinledlekelekleklleelespvvfcHnDlqegNillnkeekklvlIDF 171
                     + +q+++ +++ + +   +k k+ + +i+++ +  +l +  +++    ++   cH D+ ++N+ll+ +++ l l DF
      CCE28678.1 108 NLVQEFVPETVYRASRFFNKMKSTMPTIEVKLYTYQLFRALAYI----HSQGICHRDIKPQNLLLDPSTGILKLCDF 180
                     55566666666666666677777777777777777776666665....33468***********************9 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.5e-05      0.12     142     214 ..      91     183 ..      57     184 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.5e-05
        FTA2 142 drsralgeedgkkrpiraIVKel.............ellkeqeelevs.qlpkllrdlkklhklgIvvrDlkeenyidg......kLvDlsaa 214
                  ++ + ++ d k++  + +V+e+             ++++    +ev+ ++ +l r l  +h++gI +rD+k++n++ +      kL+D+++a
  CCE28678.1  91 LKAFYYSNGDRKDEVYLNLVQEFvpetvyrasrffnKMKSTMPTIEVKlYTYQLFRALAYIHSQGICHRDIKPQNLLLDpstgilKLCDFGSA 183
                 44556666666777777788888888888888887766677777777646889**********************984333345578888876 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0001      0.26     129     155 ..     146     172 ..     129     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
         Kdo 129 rliaklhragvnHadlyaknillqqee 155
                 r+ a +h+ g++H+d+ ++n+ll+   
  CCE28678.1 146 RALAYIHSQGICHRDIKPQNLLLDPST 172
                 677889*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3092.75
//
Query:       CCE28679.1  [L=142]
Description: uncharacterized protein CPUR_02367 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.38   11.2   8.1       0.72   10.3   8.1    1.5  1  PBP1_TM      Transmembrane domain of transglycosylase PBP1 at
       0.62    9.8   4.4       0.93    9.3   4.4    1.2  1  RR_TM4-6     Ryanodine Receptor TM 4-6
        3.8    7.4  10.9        4.4    7.1  10.9    1.1  1  SRP-alpha_N  Signal recognition particle, alpha subunit, N-te


Domain annotation for each model (and alignments):
>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   8.1   0.00012      0.72      17      71 ..      38      96 ..      21     104 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
     PBP1_TM 17 kakparkkasrrrrrdddydd....eyddeedDdddddeeeevprkgkkkkpprkkrrw 71
                ++++ar+ka+r+ +  dd  +    + + ++ D   + +ee++p++g++++++r++ r+
  CCE28679.1 38 RNQEARRKARRNAQWKDDSRNqggaNGNTSNADGRRKTDEEYSPKQGQRRQHQRHRTRR 96
                23445555555555555555558765666677777999********9999999988775 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.4   0.00016      0.93      62     148 ..       8      93 ..       2     101 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00016
                 ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXX CS
    RR_TM4-6  62 vakkseagLgDlseteaeesptpelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkka 148
                 +++ +  gLgD ++++++++ + +  +++ +++ea ++ +++ + + ++ +++   ng+ ++++ +++++e+ s+++ ++ ++++++
  CCE28679.1   8 ASHVHRMGLGDGDSNSSRQTGPQTSVERVRRNQEARRKARRNAQWKDDS-RNQGGANGNTSNADGRRKTDEEYSPKQGQRRQHQRHR 93 
                 5677888*****9999999876555555555455555555555555555.5556666665555555445555555544444444433 PP

>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  10.9   0.00074       4.4     157     258 ..      19     128 ..       2     142 .] 0.40

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00074
                  XXXXX...X.XXXXXXXXX.XXXXXXX.XXX.XXXXXXXXXXXXX.X..XXXXXXXXXXX....XXXXXXX.....XXXXXX.XXXXXXX.XXXXXXX CS
  SRP-alpha_N 157 sddstpsat.petsrpstp.sglltakeagptaedvsrrarkkan.kkrssagassgdeakasksskkkkkkp...kkkgkk.aRvWdad.gsadeed 246
                  +d+++ ++t p+ts ++ + ++++  k++++++ + + r+   an ++++++g++++de+ + k++++ + +    +++g   +Rv d +     ee 
   CCE28679.1  19 GDSNSSRQTgPQTSVERVRrNQEARRKARRNAQWKDDSRNQGGANgNTSNADGRRKTDEEYSPKQGQRRQHQRhrtRRRGCLtGRVRDITsAVGGEEG 116
                  33333333333333333332222222222222223333333222222222222333333322222222222111113333334677777743555777 PP

                  XXXXXXXX..XX CS
  SRP-alpha_N 247 kLDySapadesg 258
                  kLD+S++a+e++
   CCE28679.1 117 KLDRSNEAAEEE 128
                  9***99876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       976  (0.0544369); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1061.37
//
Query:       CCE28680.1  [L=97]
Description: uncharacterized protein CPUR_02368 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-16   59.1   0.5    4.4e-16   58.9   0.5    1.1  1  ACBP      Acyl CoA binding protein


Domain annotation for each model (and alignments):
>> ACBP  Acyl CoA binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.5   2.5e-20   4.4e-16       3      82 ..      12      91 ..      10      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 2.5e-20
                HHHHHHHHH.H...HSTS---HHHHHHHHHHHHHHHTSS--S-.---TTS.HHHHHHHHHHHHT..TT--HHHHHHHHHHHHHH CS
        ACBP  3 eFekavaavkklekklkkkpsneeklelYglyKqateGdvnts.rPsald.fkgkaKwdaWkal..kglskeeAkkkYiellke 82
                +F+ a+++ ++   +  k+++ ee+lelYglyK a   d++++ +P++l  + +k K++aWk++  +gls +eA+++Y+++++e
  CCE28680.1 12 AFDDAANERAS---A-LKDLGREEMLELYGLYKTAIGKDFSKEtKPGILSgIPAKLKYEAWKKVadRGLSAKEAQNEYVSKIDE 91
                67777777745...3.3469********************9977**99884699*********6448**************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 794.52
//
Query:       CCE28681.1  [L=398]
Description: probable SAGA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-78  261.0   3.2    1.3e-77  260.5   3.2    1.2  1  End3       Actin cytoskeleton-regulatory complex protein END3
      2e-47  159.4   0.0    5.4e-46  154.8   0.0    2.3  2  EF-hand_4  Cytoskeletal-regulatory complex EF hand
    3.6e-07   29.3   0.2    8.4e-07   28.1   0.2    1.7  1  EF-hand_1  EF hand
    1.2e-05   25.7   0.0    4.2e-05   23.9   0.0    2.1  1  EF-hand_7  EF-hand domain pair
    0.00066   19.4   0.2     0.0028   17.5   0.2    2.1  2  EF-hand_6  EF-hand domain
     0.0015   18.3   0.0     0.0031   17.3   0.0    1.5  1  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
       0.02   14.4   0.1      0.061   12.8   0.1    1.8  1  EF-hand_5  EF hand
       0.11   12.8   0.2        0.3   11.4   0.2    1.7  1  MLD        Membrane Localization Domain
       0.65   10.5   3.6         64    4.1   2.8    3.4  3  NPV_P10    Nucleopolyhedrovirus P10 protein
       0.89   10.5   3.9        1.2   10.1   1.6    2.4  2  CSN5_C     Cop9 signalosome subunit 5 C-terminal domain


Domain annotation for each model (and alignments):
>> End3  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.5   3.2     7e-81   1.3e-77       1     199 []     193     390 ..     193     390 .. 0.98

  Alignments for each domain:
  == domain 1  score: 260.5 bits;  conditional E-value: 7e-81
        End3   1 dkDqaLvflHiLnqReeGiriPrevPasLratfekekidydlnserassasktaaksksetstgkkakfgdsylsrlGvgsksekgtdfsatkgtdwee 99 
                 +kD++L+flHiLn+R+eG+riPr+vPasLr++fe+++idy+++++r+ + s++a+k++++tstg+k kfg++yl+rlG ++ +++gtdfs++k++dwee
  CCE28681.1 193 NKDACLAFLHILNYRHEGFRIPRSVPASLRSSFERNQIDYQIDNQRTGAGSRWATKADDSTSTGRKTKFGEQYLTRLGRSGFKTTGTDFSTEKTEDWEE 291
                 7*******************************************************************************99***************** PP

        End3 100 vrLkreLaeLeeklekveeeaekrkekereessksalvkreleqLLkYKeeqlreleegegkske.knlksvkedietveeqVegLesylssrkeeLeq 197
                 vrLkr+La+L++k++kvee +e+rk+++r+  sk+alv+rel+qLL+YK++qlr+leeg+gks   ++lksv++d++tv+eqV+gLe++lssr++ Le+
  CCE28681.1 292 VRLKRQLADLDAKMQKVEELVEQRKGGKRD--SKPALVRRELDQLLDYKRRQLRDLEEGKGKSAVgSSLKSVSDDLQTVREQVQGLETHLSSRQAILED 388
                 **********************99887777..*******************************999********************************9 PP

        End3 198 Lk 199
                 L+
  CCE28681.1 389 LR 390
                 96 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.8   0.0     3e-49   5.4e-46       2     103 ..       5     106 ..       4     107 .. 0.98
   2 ?    2.0   0.0      0.11   1.9e+02       6      54 ..     138     186 ..     135     230 .. 0.78

  Alignments for each domain:
  == domain 1  score: 154.8 bits;  conditional E-value: 3e-49
   EF-hand_4   2 pkleeleikkyweifsglkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpeskahlv 100
                 pk+e+ ei++yw+if  ++   + ltg+++apvlkns l++++le++wdlad+d+dg+ldfeefc+amr+ifd++nge++dvP++lP+wlvpeskahlv
  CCE28681.1   5 PKIEAKEIETYWNIFADRTGGGQFLTGEQAAPVLKNSGLRDEQLERVWDLADVDNDGNLDFEEFCVAMRVIFDILNGEYADVPKSLPDWLVPESKAHLV 103
                 79************************************************************************************************* PP

   EF-hand_4 101 qan 103
                 qa 
  CCE28681.1 104 QAT 106
                 *96 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.11
   EF-hand_4   6 eleikkyweifsglkpednkltgdkvapvlknskleedklekiwdladi 54 
                  +++ ky +i++  ++   +++   +  + ++  +++  + + w+l + 
  CCE28681.1 138 PQDKSKYEQIYQENRDMRGEVSFGALEDLYESLDVPDTDVRSAWNLVNP 186
                 678899****************999999999999999999999999653 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.2   4.7e-10   8.4e-07       2      27 ..      48      73 ..      47      75 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 4.7e-10
                HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellk 27
                l+++++++D+D+dG +dfeEf+ +++
  CCE28681.1 48 LERVWDLADVDNDGNLDFEEFCVAMR 73
                7899*********************8 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   2.3e-08   4.2e-05      37      71 .]      39      73 ..       6      73 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.3e-08
   EF-hand_7 37 egsklsdeelellfkefDtdkdGvisfdEFlklyr 71
                 +s l+de+le++++  D d+dG ++f+EF+ ++r
  CCE28681.1 39 KNSGLRDEQLERVWDLADVDNDGNLDFEEFCVAMR 73
                5677899************************9996 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.6   8.3e+03       5      20 ..      15      32 ..      11      40 .. 0.66
   2 !   17.5   0.2   1.6e-06    0.0028       2      27 ..      48      73 ..      47      80 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.6
   EF-hand_6  5 aFklf.DkdgdG.kidae 20
                 +++f D++g G +++ e
  CCE28681.1 15 YWNIFaDRTGGGqFLTGE 32
                566776777766677766 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.6e-06
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                l+++++l D+d+dG +d+eE+  a+r
  CCE28681.1 48 LERVWDLADVDNDGNLDFEEFCVAMR 73
                78999*****************9998 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.7e-06    0.0031      25      52 ..      45      72 ..      33      74 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.7e-06
   EF-hand_8 25 eeevdilfrefDtdgdGkisfeEFcvll 52
                +e+++ + +++D d+dG ++feEFcv +
  CCE28681.1 45 DEQLERVWDLADVDNDGNLDFEEFCVAM 72
                55555566789***************98 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   3.4e-05     0.061       8      21 ..      55      68 ..      53      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.4e-05
                H-SS-SSCE-HHHH CS
   EF-hand_5  8 iDlNgDGkIskeEL 21
                +D+++DG +++eE+
  CCE28681.1 55 ADVDNDGNLDFEEF 68
                8************9 PP

>> MLD  Membrane Localization Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00017       0.3       4      56 ..     341     394 ..     339     395 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
         MLD   4 eLkeaakvkGk.viGesyqsildkLdeyhellgnmkllkleqvealfeLrkqie 56 
                 +L++  ++kGk + G s +s++d L++++e+ + ++    ++ ++l  Lr qie
  CCE28681.1 341 QLRDLEEGKGKsAVGSSLKSVSDDLQTVREQVQGLETHLSSRQAILEDLRSQIE 394
                 79999999**9568*******************999998999999999999998 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.1   1.9e+03      57      71 ..      71      87 ..      45      93 .. 0.66
   2 ?    2.2   0.1      0.14   2.4e+02      23      42 ..     294     313 ..     288     317 .. 0.72
   3 ?    4.1   2.8     0.036        64      15      52 ..     360     387 ..     298     396 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.1
     NPV_P10 57 kvenIqdiLnpde..vP 71
                ++  I diLn++   vP
  CCE28681.1 71 AMRVIFDILNGEYadVP 87
                67789999*97765666 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.14
     NPV_P10  23 lqqqvddvqenlpdvtelne 42 
                 l+ q++d+++++++v+el e
  CCE28681.1 294 LKRQLADLDAKMQKVEELVE 313
                 56677777777777777765 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.036
     NPV_P10  15 avddkVdalqqqvddvqenlpdvtelnekLdaqsaqLa 52 
                  v+d ++ + +qv+           l+++L + +a L+
  CCE28681.1 360 SVSDDLQTVREQVQG----------LETHLSSRQAILE 387
                 222222222222222..........2233333333333 PP

>> CSN5_C  Cop9 signalosome subunit 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.7   6.7e+03      25      74 ..     104     158 ..      98     164 .. 0.52
   2 ?   10.1   1.6   0.00066       1.2      14      78 ..     296     375 ..     294     379 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.7
      CSN5_C  25 kaessvsrsrsaagtlseeaseaeekkk............kkkedsqLakvvkdstkiasea 74 
                 +a++++s +++  ++ ++++       +            k +++s+ +++ ++ + +  e 
  CCE28681.1 104 QATRAISGKQAHFEQVEDDS-------DdlglkdgfewymKPQDKSKYEQIYQENRDMRGEV 158
                 44444444444443333322.......12333345667776667777777776666666665 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00066
      CSN5_C  14 kqisDLaeKlekaessvsrsrsaagtlseeaseaeekkk................kkkedsqLakvvkdstkiaseaqhGL 78 
                 +q++DL +K++k+e+ v++++      + +  ++e  +                 k++  s+L+ v  d +    e+++GL
  CCE28681.1 296 RQLADLDAKMQKVEELVEQRKGGKRDSKPALVRRELDQLldykrrqlrdleegkgKSAVGSSLKSVSDDLQ-TVREQVQGL 375
                 7****************999977755555544444444367777777777777755555555555554444.445666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2908.57
//
Query:       CCE28682.1  [L=281]
Description: probable isopentenyl-diphosphate delta-isomerase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-26   92.5   0.0      3e-26   92.0   0.0    1.2  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   1.7e-30     3e-26       2     131 .]      79     226 ..      78     226 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 1.7e-30
                 EEEEEEEEEEETTSEEEEEEES..SSSTTT.E....E.SS........EEECBTTSHHHHHHHHHHHHHHSEEEEEE.....EEEEEEEEEEEEEEEEE CS
       NUDIX   2 lrravgvvllnekgevLlvrrs..kkpfpg.W....e.lP........gGkvepgEtpeeAArREleEEtGleaell.....ellgrlhylapydgpyg 79 
                 l+ra++v+l+n+++e+Ll++r+  k +fp+ W    + +P        +   ++ E ++ AA+R+le+E+G+++e++     ++l+r+hy+ap+dg++g
  CCE28682.1  79 LHRAFSVFLFNDNNELLLQQRAseKITFPDmWtntcCsHPlavasetgANLPDAIEGVKRAAQRKLEHELGIKKEQVpiekfHFLTRIHYKAPSDGKWG 177
                 79*****************************9888636889******9***********************98888888888***************** PP

                 EEEEEEEEEEEEECSGCSSTSTTTEEEEEEEEHHHHHHHHTHCTHHHHHHHH CS
       NUDIX  80 deheilyvfleevegelepndenevsevrwvpleellkeklaaesrkllpwl 131
                  ehei+y+++ + + +l  n  nev++ ++v+ e+l ke +++++ k++pw+
  CCE28682.1 178 -EHEIDYILFIKTHVDLDIN-LNEVQATQYVSAEKL-KELFEQPDLKFTPWF 226
                 .9*****************9.***************.**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2250.10
//
Query:       CCE28683.1  [L=338]
Description: related to single-stranded DNA binding protein 30K chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-19   68.0   0.7    2.7e-18   66.5   0.1    2.0  2  RPA_C            Replication protein A C terminal
    1.9e-08   34.2   0.2    3.7e-08   33.2   0.1    1.5  2  tRNA_anti-codon  OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.28   2.5e+03      17      44 ..      63      90 ..      48     114 .. 0.52
   2 !   66.5   0.1     3e-22   2.7e-18       1     104 []     224     331 ..     224     331 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.28
                ....XXXXXXXXXXXXXXXXXXXXXXXX CS
       RPA_C 17 gaavavsaggsamgtdgalsgnqaklan 44
                g  + +s g++ +++ g++ ++  +++ 
  CCE28683.1 63 GGYSTTSYGAQGGDDSGGFLAGASSQQG 90
                3344444444444444555555444444 PP

  == domain 2  score: 66.5 bits;  conditional E-value: 3e-22
                 HHHHHHHTXXXXXX.........XXXXXXXXXXXX...XXXXXXXXXXXX.XSXHHHHHHHHHHHH.SXSTTTEEHHHHHHHSTSXHHHHHHHHHHHHH CS
       RPA_C   1 HLeltkgasgssag...aagaavavsaggsamgtd...galsgnqaklankgltalaqqvlnlikqspeseeGvhvdeiaqklrlsvndvkqavdeLsn 93 
                 HL+ tkg+ g s+     +ga+  +s+  + +g+    g+++g+ +++++ g+ + a+ v  li++ + s+eGvh+++i  +l+++v++v  a deL++
  CCE28683.1 224 HLFYTKGSLGDSGSggaSGGANNGESMFVDGGGYGndsGGAGGQTMSKLT-GCGPQARDVFKLIND-ASSNEGVHLNVIMSSLKMPVREVLAASDELLG 320
                 99999988766665444444444444444444433111555555555555.9**************.******************************** PP

                 TTSEEESSSTT CS
       RPA_C  94 eGiiYsTiDde 104
                 +G+iY+T+Dde
  CCE28683.1 321 QGLIYTTVDDE 331
                 *********96 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   4.2e-12   3.7e-08       2      64 ..     134     196 ..     133     216 .. 0.89
   2 ?   -3.8   0.0       1.5   1.3e+04      16      27 ..     321     332 ..     319     333 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 4.2e-12
                      EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET..HHHHHHHTTS-TTSEEEEEEEEEECTTS CS
  tRNA_anti-codon   2 tvaGrvtsisdrsggkvifidlrDgtgriqvvlfr..eeatklaenlkeGdvvrvtGrvkrrpgg 64 
                      t++G ++si        i+++++Dgtg+i+v  +   +++++ + +++ + +vrv+Gr+k++ ++
       CCE28683.1 134 TFVGQIRSI--NPQPTNITFKIDDGTGQIEVKKWIdvDKQDNSNGEFELDAHVRVWGRLKSFSNK 196
                      899******..************************88888888888***************9776 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.5
                      TTEEEEEEEETT CS
  tRNA_anti-codon  16 gkvifidlrDgt 27 
                      +++i+ +++D+t
       CCE28683.1 321 QGLIYTTVDDET 332
                      688999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2381.18
//
Query:       CCE28684.1  [L=917]
Description: related to endopeptidase La 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-66  221.3   1.1    1.5e-65  220.6   1.1    1.3  1  Lon_C           Lon protease (S16) C-terminal proteolytic dom
    2.8e-23   82.9   0.0    5.9e-23   81.8   0.0    1.6  1  LON_substr_bdg  ATP-dependent protease La (LON) substrate-bin
    1.7e-22   80.3   0.0    5.2e-22   78.7   0.0    1.8  1  AAA             ATPase family associated with various cellula
    7.4e-08   32.5   0.0    2.8e-07   30.6   0.0    2.1  1  AAA_5           AAA domain (dynein-related subfamily)
    7.6e-07   29.0   0.0    2.2e-06   27.5   0.0    1.9  1  ChlI            Subunit ChlI of Mg-chelatase
    7.4e-06   26.4   0.4    4.6e-05   23.9   0.0    2.4  2  AAA_16          AAA ATPase domain
    2.7e-05   24.0   0.0    0.00018   21.4   0.0    2.4  2  AAA_3           ATPase family associated with various cellula
    4.1e-05   23.7   0.0    0.00015   21.9   0.0    1.9  1  AAA_2           AAA domain (Cdc48 subfamily)
    6.2e-05   22.8   0.0    0.00024   20.9   0.0    2.1  2  IstB_IS21       IstB-like ATP binding protein
    0.00014   22.2   0.0       0.01   16.1   0.0    2.7  1  AAA_22          AAA domain
    0.00017   21.4   0.2    0.00061   19.6   0.0    1.9  2  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
     0.0042   17.3   0.0     0.0096   16.1   0.0    1.6  1  AAA_33          AAA domain
  ------ inclusion threshold ------
      0.011   15.0   1.0      0.022   14.0   0.0    2.0  3  TIP49           TIP49 P-loop domain
      0.013   15.9   0.1      0.074   13.4   0.0    2.3  2  RNA_helicase    RNA helicase
      0.014   14.9   0.0      0.027   14.0   0.0    1.3  1  AAA_7           P-loop containing dynein motor region
      0.014   15.9   0.2       0.18   12.3   0.0    2.4  2  AAA_23          AAA domain
      0.029   14.3   0.0      0.074   13.0   0.0    1.7  1  NACHT           NACHT domain
      0.032   14.8   0.0       0.11   13.1   0.0    1.9  1  AAA_18          AAA domain
      0.039   13.3   0.3       0.15   11.4   0.2    2.0  2  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.043   13.0   0.0      0.087   12.0   0.0    1.4  1  NB-ARC          NB-ARC domain
      0.055   13.5   0.0       0.14   12.2   0.0    1.7  1  AAA_14          AAA domain
      0.075   12.9   0.1       0.24   11.3   0.1    1.9  1  NTPase_1        NTPase
      0.079   13.4   0.5       0.74   10.2   0.1    2.9  2  AAA_17          AAA domain
      0.087   12.7   0.0        0.2   11.5   0.0    1.6  1  RsgA_GTPase     RsgA GTPase
      0.099   12.4   0.0       0.18   11.5   0.0    1.4  1  AAA_24          AAA domain
        0.1   12.2   0.1        0.3   10.6   0.1    1.7  1  AAA_25          AAA domain
       0.13   12.3   0.0       0.27   11.2   0.0    1.5  1  TsaE            Threonylcarbamoyl adenosine biosynthesis prot


Domain annotation for each model (and alignments):
>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.6   1.1   2.2e-68   1.5e-65       2     192 ..     720     916 ..     719     917 .] 0.94

  Alignments for each domain:
  == domain 1  score: 220.6 bits;  conditional E-value: 2.2e-68
                 E-TTTTHHHH-S-SS--SSSSS--BSSEEEEEEEETTE..EEEEEEEEEEESS-S-EEEEES--HHHHHHHHHHHHHHTSS-GGGSS-S....S-TTT- CS
       Lon_C   2 vtakeleellGkkrfrseeaekedqvGvvtGlawtevG..GdlltieavllpgkgklkltGklgdvmkesaqaalsyvrsraeelgidk....evfekk 94 
                 +t++++e++lG ++f++e aek+++ G+vtGl+  ++G  G++l+ie++ +pg+g+++ltGklgdv+kes+++al++v+++a elg+ +    ++++++
  CCE28684.1 720 LTTEDVETILGIEKFEEEIAEKTSRPGIVTGLVAYSTGgnGSILFIEVADMPGSGRVQLTGKLGDVLKESVEVALTWVKAHAYELGLTPdsttDIMKDR 818
                 57899**************************98777762457*******************************************98762222578999 PP

                 EEEEEE-S-B-GGGGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGTTTS-HHHHTS-B--EE CS
       Lon_C  95 dihihvPeGavPkdGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdlediPeevreeleiilv 192
                  ih+h P+Ga+PkdGPs+G+  a al+sl++gk+v   +amtGei+LrGr+ ++GG+kekl++a rag+k+v+lP +n+kd++d+P+ev+++l+ii v
  CCE28684.1 819 SIHVHCPSGAIPKDGPSSGIGQAIALISLFSGKPVPPTMAMTGEISLRGRITAVGGIKEKLIGALRAGVKTVLLPVQNRKDVRDLPQEVKDGLQIIHV 916
                 ***********************************************************************************************986 PP

>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   8.9e-26   5.9e-23       1     208 []       8     257 ..       8     257 .. 0.79

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 8.9e-26
  LON_substr_bdg   1 elpllpldnkv.lfPgitlpltvs..rpksiaaierll.........dkdkp.yigvflv.k...................esqkdaide.esis 61 
                     +lp++pl +   l+Pg++ ++ v+  rp+  a++  ++          +  +  i+++ + +                      +++    +++ 
      CCE28684.1   8 TLPVIPLARASvLLPGLIQRIPVTssRPDIPALLAHVYekaaakgpdGRIDSiPIACVPLsSpfvgpagqllinngeevdtSQLEEVNPGsAGKA 102
                     5999**987766******99999888999999999999999999886332222455555551555666777777777788744444444557899 PP

  LON_substr_bdg  62 elysvGtvarIvqilrlddgrikvvlegleRvkikklekekeegylvaeveiiedds...epedsdslqkelkalvqeiiekikk.......... 143
                     +++ +G+ a+Iv+i  ++ g++ + ++g++R++++k+  + e+++++a+v++  d +    ++   +l+  lka  +e+++ ++           
      CCE28684.1 103 DIFGFGVAAKIVGIDGRGGGEFALRVQGVSRMRVDKI--VRERPFFQAKVTYFSD-EidvADKQLQDLFALLKAQSRELVTILRIssllprtrgd 194
                     99***********************************..669**********955.223455566666666666666666666647666666554 PP

  LON_substr_bdg 144 .slarellkllleielllkyedlenpyrLadlvaailpfsneekqelLeeldvedRlkkvlelLkr 208
                      +    +  l ++ ell   +++++ + Lad++ +++ +s eek+ +L++ldv+ R+ kvlelL+r
      CCE28684.1 195 pA---LSPGLTKRLELLIMRREIKEAGLLADFMSNLVEASHEEKLGVLAALDVKVRITKVLELLER 257
                     32...677788889**************************************************86 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   7.8e-25   5.2e-22       1     127 [.     495     633 ..     495     637 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 7.8e-25
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk.........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLl 90 
                 +ll+GppG+GKT+lak+va+ lg++f +is+  ++++         yv +++  i + ++++   +   ++++DEid+++ ++      ++ +  +++l
  CCE28684.1 495 MLLVGPPGVGKTSLAKSVATALGRKFHRISLGGVRDEaeirghrrtYVAAMPGLIVQGLRKVGVAN--PVFLLDEIDKIGMAS------VHGDPSAAML 585
                 89*********************************889**********************999887..9***********999......********** PP

                 HHHHHTTTS............SSTEEEEEEESSGGGSTHHHHSTTSSEE CS
         AAA  91 teldgvkkk............eskvivigatnrpdkldpallrgRfdrk 127
                 ++ld ++++             s++++i+++n+ d+++ +ll +R++++
  CCE28684.1 586 EVLDPEQNHtfqdhyvgmpidLSRILFIATANTLDTIPGPLL-DRMEMI 633
                 *********************999******************.**9975 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   4.3e-10   2.8e-07       2     129 ..     495     621 ..     494     630 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 4.3e-10
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG--.HHHH....HHHHHHHHS CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEverae.sevl....nsLlsllee 91 
                 +lLvGppG+gK++la+++a al+r+++ + l     e++++g+r++     +  ++ +v+  r       +++lDE++++   +v     +++l +l+ 
  CCE28684.1 495 MLLVGPPGVGKTSLAKSVATALGRKFHRISLGGVRDEAEIRGHRRT---YVAAMPGLIVQGLRkvgvANPVFLLDEIDKIGmASVHgdpsAAMLEVLDP 590
                 69*******************************************7...666677777777778888999*********98666652222578888888 PP

                 SEEE..-SSSEEE---......-EEEEEESS--.-TT- CS
       AAA_5  92 rrllleeggelvkaknddllerfrviatanpldrslne 129
                 ++ ++   +++v+ + d  l+r+ +iatan+ld     
  CCE28684.1 591 EQNHT-FQDHYVGMPID--LSRILFIATANTLD----T 621
                 77773.33444444443..56688888888888....4 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   3.2e-09   2.2e-06      37     121 .]     812     896 ..     765     896 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 3.2e-09
        ChlI  37 gfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieaeeetlflGeLsldGslrpvkgvlpialaakkegikkvivpken 121
                    +++++i v   +  ++k+G++  +  Ai++++  + +++  ++ + Ge+sl G++  v g+ + ++ a ++g+k+v++p +n
  CCE28684.1 812 TDIMKDRSIHVHCPSGAIPKDGPSSGIGQAIALISLFSGKPVPPTMAMTGEISLRGRITAVGGIKEKLIGALRAGVKTVLLPVQN 896
                 44467788999999999*****************************************************************998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       3.5   2.3e+03     139     161 ..     152     174 ..     136     182 .. 0.77
   2 !   23.9   0.0     7e-08   4.6e-05      24      52 ..     491     526 ..     477     587 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3.5
      AAA_16 139 lvlDdlqwadeaslqllaaLlrl 161
                  + D+++ ad + ++l+a+L + 
  CCE28684.1 152 YFSDEIDVADKQLQDLFALLKAQ 174
                 67799999999888888777654 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 7e-08
      AAA_16  24 p.elvllsGesGvGKsslvrellralekd......g 52 
                   +++ll+G++GvGK+sl++++++al ++      g
  CCE28684.1 491 KsPIMLLVGPPGVGKTSLAKSVATALGRKfhrislG 526
                 238*********************999994333331 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         4   2.7e+03      67     100 ..     153     188 ..     136     191 .. 0.75
   2 !   21.4   0.0   2.7e-07   0.00018       2     114 ..     495     620 ..     494     629 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4
       AAA_3  67 ladeinrappktqs..alleameerqvtvegethkl 100
                 ++dei+ a  + q   all+a   + vt+ + +  l
  CCE28684.1 153 FSDEIDVADKQLQDlfALLKAQSRELVTILRISSLL 188
                 689999999999965599999999999987776665 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 2.7e-07
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGte.vfeeke...kefefkkGpvfanllladeinra.ppkt....qsalleame.erq 90 
                 +ll g PG++kt l+k++a+al+ +f+ri +      ++i G++  + ++        ++k  v + ++l dei++  ++ +     +a+le+++ e++
  CCE28684.1 495 MLLVGPPGVGKTSLAKSVATALGRKFHRISLGGVRDEAEIRGHRrTYVAAMpglIVQGLRKVGVANPVFLLDEIDKIgMASVhgdpSAAMLEVLDpEQN 593
                 6899****************************99999*****8613444443333345678889999******99852233322226899**9975777 PP

       AAA_3  91 vtvegethklp...epflvlatqnPie 114
                  t++++   +p   +  l +at n ++
  CCE28684.1 594 HTFQDHYVGMPidlSRILFIATANTLD 620
                 888888777763334567788888776 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.2e-07   0.00015       6     129 ..     495     618 ..     490     624 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.2e-07
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-H..HHHTTS....EEEEETGGG-------------HHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyv..gaeegG....ivllDEidKihpkessgadvSregVqrd 98 
                 +ll+gp gvGkt lak++a  l     +k+ r+    +  e e++      + a pg +  g  + G    + llDEidKi    s   d S      +
  CCE28684.1 495 MLLVGPPGVGKTSLAKSVATALG----RKFHRISLGGVRDEAEIRGHRRTYVAAMPGLIvqGLRKVGvanpVFLLDEIDKIGM-ASVHGDPS-----AA 583
                 6899******************9....68888888888887777777777777777765113344458899***********9.66666665.....68 PP

                 HHHHHH...--EE----.---EE-TT-EEEEEE-- CS
       AAA_2  99 LLqile...ggtltdkq.grkvdtknilfImtgaf 129
                 +L +l+   + t +d++ g ++d + ilfI+t + 
  CCE28684.1 584 MLEVLDpeqNHTFQDHYvGMPIDLSRILFIATANT 618
                 99999943334455666359************996 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       8.3   5.5e+03      82     121 ..     247     286 ..     245     292 .. 0.80
   2 !   20.9   0.0   3.6e-07   0.00024      32      80 ..     477     525 ..     466     595 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8.3
   IstB_IS21  82 rvedLveelkrarrdgklaralkrllkvdllilDdlgllp 121
                 r+++++e l+r+ +  k + ++++++ v + ilD l  +p
  CCE28684.1 247 RITKVLELLERQVGGIKNNFKITTFTSVPVQILDRLNDNP 286
                 7788888999999989999999999999999999876665 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 3.6e-07
   IstB_IS21  32 krkvkeLatlsfiekkenivllGpsGvGKshlaialgveavraglsvlf 80 
                  +k++ L++ + ++k+  ++l+Gp+GvGK+ la +++++  r+ ++++ 
  CCE28684.1 477 TAKLQILRSKKMVDKSPIMLLVGPPGVGKTSLAKSVATALGRKFHRISL 525
                 5678999****************************99998888777765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.5e-05      0.01       6      45 ..     493     523 ..     488     611 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.5e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfv 45 
                  i++++G++G+GKT l++ ++  l         ++++ ++
  CCE28684.1 493 PIMLLVGPPGVGKTSLAKSVATAL---------GRKFHRI 523
                 689*****************9999.........4444444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   9.2e-07   0.00061      26      65 ..     485     524 ..     474     537 .. 0.78
   2 ?   -2.3   0.0       4.8   3.2e+03     127     155 ..     604     632 ..     601     634 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 9.2e-07
      RuvB_N  26 akkreealdhvllyGpPGlGkttlakiiakelgvklkits 65 
                 +kk  ++   +ll+GpPG+Gkt+lak +a+ lg k++  s
  CCE28684.1 485 SKKMVDKSPIMLLVGPPGVGKTSLAKSVATALGRKFHRIS 524
                 55555566679**********************9998776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.8
      RuvB_N 127 kldlpkftlvgattragllssPlrdrfgi 155
                  +dl++  +++++    ++  Pl dr+ +
  CCE28684.1 604 PIDLSRILFIATANTLDTIPGPLLDRMEM 632
                 6899999999999999999******9976 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.4e-05    0.0096       2      29 ..     495     524 ..     494     551 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avlls 29 
                 +llvG+pG+GK+ la++++ +lg  + ++s
  CCE28684.1 495 MLLVGPPGVGKTSLAKSVATALGrkFHRIS 524
                 689*******************98877776 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.6   3.7e+03     228     252 ..     156     176 ..     140     183 .. 0.74
   2 ?   -4.0   0.1       9.8   6.5e+03     228     260 ..     401     432 ..     400     440 .. 0.78
   3 ?   14.0   0.0   3.3e-05     0.022      40      83 ..     480     525 ..     474     529 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.6
                 XXXXXXXXXXXXXXXX....XXXXX CS
       TIP49 228 dlDvanarpqdllslllqllkskkt 252
                 ++Dva+ + qdl++ll    k++++
  CCE28684.1 156 EIDVADKQLQDLFALL----KAQSR 176
                 79***********999....44444 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 9.8
                 XXXXXXXXXXXXXXXX....XXXXXXXXXXXXX CS
       TIP49 228 dlDvanarpqdllslllqllkskkteiteklre 260
                  lD +  r  ++l++l +l++s + e++e++r+
  CCE28684.1 401 GLDKVKKRLIEYLAVL-RLKQSVNDEVDEQIRQ 432
                 5788888888899988.8888999999999986 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 3.3e-05
                 XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  40 velikekklaGra..vLlaGpsgtGktalaiaiskelgedvpfval 83 
                 ++++++kk+  ++  +Ll+Gp+g Gkt+la +++ +lg++ + ++l
  CCE28684.1 480 LQILRSKKMVDKSpiMLLVGPPGVGKTSLAKSVATALGRKFHRISL 525
                 57889999999855489*********************99876665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       7.7   5.1e+03      25      67 ..     421     465 ..     407     481 .. 0.71
   2 ?   13.4   0.0   0.00011     0.074       2      27 ..     496     521 ..     495     545 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 7.7
  RNA_helicase  25 klklkkkdsvysrnpeddfwdgYt.gqevvvidDfgqvkdee.np 67 
                   +++++ ++++   ++e+++ +g +  q+ ++i+D g++++++ ++
    CCE28684.1 421 SVNDEVDEQIRQVEAETSVSSGTDrMQQHHIIQDGGNRVKSSsKH 465
                   445555566666777888888888789999999999888774443 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00011
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklk 27 
                   +l+Gp+g+GK++lak++a+al +k+ 
    CCE28684.1 496 LLVGPPGVGKTSLAKSVATALGRKFH 521
                   689******************98883 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     4e-05     0.027      18      60 ..     476     518 ..     460     525 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4e-05
       AAA_7  18 dtvrysyllel.llknkkpvllvGptGtGKtviikdllkkldke 60 
                  t+++++l ++ +++++  +llvGp G+GKt+++k++ ++l  +
  CCE28684.1 476 HTAKLQILRSKkMVDKSPIMLLVGPPGVGKTSLAKSVATALG-R 518
                 5677777755416666666789**************988887.4 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3       1.3   8.6e+02     115     176 ..     337     416 ..     277     448 .. 0.59
   2 ?   12.3   0.0   0.00028      0.18      19      52 ..     492     525 ..     479     544 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.3
      AAA_23 115 deleqfisellgskkiilnlilflgqerfeefelkdkke...........rleelekeleeledekkllekl.......e 176
                  +  ++++++l + ++ +++ + ++  r++ + l++ +             l  ++k+l++     ++++k+       +
  CCE28684.1 337 PDVAKTVDRELRRLQKMMPMNQEYQVTRNWLETLSEIPWaaitddrlgpeTLTRARKQLDDDHYGLDKVKKRlieylavL 416
                 45556666677777777777777777777666663222244444555566555555555554444444444433333331 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00028
      AAA_23  19 kgltlItGpNGaGKTTildAiklaLygetprlsr 52 
                 +++ l++Gp G GKT++   +  aL+ +++r s 
  CCE28684.1 492 SPIMLLVGPPGVGKTSLAKSVATALGRKFHRISL 525
                 6999***********************9998775 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00011     0.074       3      26 ..     495     518 ..     493     521 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00011
                 EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawae 26 
                 ++l G++G+GKT L++++a+a+ +
  CCE28684.1 495 MLLVGPPGVGKTSLAKSVATALGR 518
                 799****************99865 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00016      0.11       2      23 ..     496     517 ..     495     541 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00016
      AAA_18   2 lltGtpGvGKttlakeLskrlg 23 
                 ll G+pGvGKt+lak ++  lg
  CCE28684.1 496 LLVGPPGVGKTSLAKSVATALG 517
                 689************9988873 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00023      0.15      25      47 ..     495     517 ..     492     528 .. 0.89
   2 ?   -2.1   0.0         3     2e+03     182     195 ..     619     632 ..     614     635 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00023
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllp 47 
                   +llvGppG GKt lak +++ l 
    CCE28684.1 495 MLLVGPPGVGKTSLAKSVATALG 517
                   89**************9998775 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3
  Mg_chelatase 182 lsklsgplldRidl 195
                   l+ + gplldR+++
    CCE28684.1 619 LDTIPGPLLDRMEM 632
                   56789******997 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013     0.087      19      47 ..     491     516 ..     476     529 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
                 CSEEEEEEESTTSSHHHHHHHHCCSHCCC CS
      NB-ARC  19 qslvvalvGmgGvGKttlakqilnksdev 47 
                 +s ++ lvG +GvGKt lak++      +
  CCE28684.1 491 KSPIMLLVGPPGVGKTSLAKSVATA---L 516
                 3469*****************9876...4 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0002      0.14       2      76 ..     492     571 ..     491     591 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0002
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla.dpe.....kllelileklke..ekktylflDEiqev 76 
                 ++i++++G+  vGKT l+k ++  l    +++  i+l   rd+++    +      ++ li + l++    + +++lDEi ++
  CCE28684.1 492 SPIMLLVGPPGVGKTSLAKSVATALG---RKFHRISLGGVRDEAEIrGHRrtyvaAMPGLIVQGLRKvgVANPVFLLDEIDKI 571
                 5799******************8888...99999999887774422112122344445555555433666788999***9887 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00037      0.24       3      37 ..     496     532 ..     494     545 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00037
                 EEE--TTSSHHHHHHHHHHHH.....GGGEEEEEEEE CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellkss..gvkvgGfytee 37 
                 ++ GppGvGKt l k v+ +l ++   +++gG+  e 
  CCE28684.1 496 LLVGPPGVGKTSLAKSVATALGRKfhRISLGGVRDEA 532
                 688******************7764355666666554 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       4.3   2.9e+03      29      64 ..     209     245 ..     209     284 .. 0.68
   2 ?   10.2   0.1    0.0011      0.74       1      38 [.     498     536 ..     498     558 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.3
                 HHHHHHHTTTS.HSSHHHHCTSHHHHHHHHHHHHHHH CS
      AAA_17  29 llreeakrggl.akardemrklpleekkelqkeaaek 64 
                 ++r e+k+ gl a+  +++ ++++eek  +++ +  k
  CCE28684.1 209 IMRREIKEAGLlADFMSNLVEASHEEKLGVLAALDVK 245
                 5888898888756666777777777776666655444 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0011
                 EE-TTSSHHHHHHHHHHHH..TEEEEEHHHHHHHHHHTTT CS
      AAA_17   1 lGgPGsGKgtqceklveky..gfthlsaGdllreeakrgg 38 
                 +G+PG+GK+ +++ ++  +  +f+ +s G + r+ea+ +g
  CCE28684.1 498 VGPPGVGKTSLAKSVATALgrKFHRISLGGV-RDEAEIRG 536
                 7***************999555777888874.66666665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00031       0.2      94     131 ..     486     524 ..     444     537 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00031
                  HHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  94 kellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  k+++++  +++lvG+ GvGK++L ++++  l  k + +s
   CCE28684.1 486 KKMVDKsPIMLLVGPPGVGKTSLAKSVATALGRKFHRIS 524
                  45555557999**************99988777777666 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00027      0.18       4      22 ..     494     512 ..     491     523 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00027
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                  +l++Gp+g+GKT+lak+ 
  CCE28684.1 494 IMLLVGPPGVGKTSLAKSV 512
                 689*************997 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00045       0.3      30      56 ..     489     515 ..     482     529 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00045
      AAA_25  30 lpagelallaGapgtGKttlaldlala 56 
                 + +  + ll+G+pg+GKt la ++a a
  CCE28684.1 489 VDKSPIMLLVGPPGVGKTSLAKSVATA 515
                 56667889************9887754 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00041      0.27      19      46 ..     492     519 ..     473     524 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00041
                 TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve 46 
                 + ++lL G+ G+GKT l++++a alg +
  CCE28684.1 492 SPIMLLVGPPGVGKTSLAKSVATALGRK 519
                 4469********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.42
# Mc/sec: 6550.07
//
Query:       CCE28685.1  [L=76]
Description: uncharacterized protein CPUR_02373 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.08   12.7   0.0      0.089   12.5   0.0    1.0  1  SBD_N     Sugar-binding N-terminal domain


Domain annotation for each model (and alignments):
>> SBD_N  Sugar-binding N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     5e-06     0.089      44      99 ..       9      63 ..       3      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5e-06
                ---TTS-HHHHHHHHHHHHHHHHHTT.-S.EEEE..TC--TTTTSTHHHHHHHHHHH CS
       SBD_N 44 tnsRalppeeaaarvrealkalkaagaak.lsykvvSrfDStlrGnigaevdalada 99
                + sR+++ + a+a v+++l     +g +  l+ k  S+fDS   G  g ++++++d 
  CCE28685.1  9 LYSRHFKRHPAYAYVTKVLVVTLPLGSRIlLVSK--STFDSIKLGVKGVALQLAMDY 63
                67****************8888888865535555..************999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 618.86
//
Query:       CCE28686.1  [L=718]
Description: uncharacterized protein CPUR_02374 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-07   29.1  10.4    1.3e-06   28.5  10.4    1.3  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5  10.4     7e-11   1.3e-06       2      38 ..     232     269 ..     231     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 7e-11
                 S-HHHHHCT---STSSSS-HHHHHCT..HHHCCCCTCCC CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkkln..leCtfysessk 38 
                 +C +C++ + +Cda++P Cs+C++++    C++ + +++
  CCE28686.1 232 PCVPCKRAHLRCDAQRP-CSRCISNGkeDACVDVQHKKR 269
                 6****************.********8888998777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 5721.55
//
Query:       CCE28687.1  [L=753]
Description: related to DNA mismatch repair protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-99  330.5   0.0    1.2e-98  329.8   0.0    1.3  1  Mlh1_C          DNA mismatch repair protein Mlh1 C-terminus
    2.1e-31  108.1   0.0    3.5e-31  107.3   0.0    1.4  1  DNA_mis_repair  DNA mismatch repair protein, C-terminal domai
    2.3e-10   40.4   0.0    5.1e-10   39.3   0.0    1.5  1  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
    8.5e-06   26.2   0.0    2.9e-05   24.5   0.0    1.9  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l


Domain annotation for each model (and alignments):
>> Mlh1_C  DNA mismatch repair protein Mlh1 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.8   0.0  2.6e-102   1.2e-98       1     270 []     467     753 .]     467     753 .] 0.95

  Alignments for each domain:
  == domain 1  score: 329.8 bits;  conditional E-value: 2.6e-102
                 --HHHHHHHHHHHHHB-HHHHHHHHT-EEEEEEET..TEEEEEETTEEEEEEHHHHHHHHHHHHHHHHTT--EEEE-G-.-BHHHHHTTS-SHH..... CS
      Mlh1_C   1 kltsvkelraeveesahkeLteilanltfVGlvde..rlaliQhgtkLylvdygalskelfyqllLtdFgnfgeikLeeplslkeLlelaleeeeeeee 97 
                 kl+s kelr+ev +++h++Ltei++++tfVG+vde  rl+++Q g+kLylvdyg+ + e++yql+L dFgnfg+i+++++l+l++Ll++a+e e+++  
  CCE28687.1 467 KLNSLKELRNEVCRDIHNDLTEIFSTHTFVGIVDEnrRLVAMQGGVKLYLVDYGHACFEYLYQLGLDDFGNFGTIRFSPALDLRRLLRMAAEAEKKAL- 564
                 699******************************************************************************************98555. PP

                 ............HHHHHHHHHHHTHHHHHHHH--EETT-EEEEEEEE-STT----STTHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHS----.--- CS
      Mlh1_C  98 eeseeedkskeelaekivelLiekaemLeeyFsieidedgellslPlllkgytpslekLPlfllrLateVdWeeekeCfetilrelAlfyapeqlpeke 196
                   ++++d + e+++ek+  +Lie++emL+eyFs+e++ +g+l+s+Pll+kgytp+l kLP+fllrL+++V+W+eek+Cfet+lrelA+fy+peqlp ++
  CCE28687.1 565 -GASDDDFPLEAIIEKVSAQLIERREMLQEYFSLEVSPTGQLISIPLLVKGYTPPLGKLPRFLLRLGPNVNWTEEKACFETFLRELATFYVPEQLPVAP 662
                 .55678889****************************************************************************************99 PP

                 ......................-T.T-...TTS-HHHHHHHHHHHHHHHHHHHHTHHHHHHHH---BGGGGG..GEEEEEEHHHHHHHS--- CS
      Mlh1_C 197 es..................eekaseeekeeeeeeeeeeeaeerreelkwvlehvlfpaikarllppksllkdgtvvevasledLYkVFERC 270
                  s                  ++ + ++++ +  ee+   e+++rr++++w++eh++fpa+k++l+++k+l++ g+++evasl+ LY+VFERC
  CCE28687.1 663 VSvgrsttatnsdnnnnnssSSGSGNDDSGQGGEEDIPVEIKKRRQHVRWAVEHIFFPAFKSKLVATKALMD-GGILEVASLKALYRVFERC 753
                 99**********999988775556667777777888899*********************************.8****************** PP

>> DNA_mis_repair  DNA mismatch repair protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.0   7.9e-35   3.5e-31       1     118 [.     246     364 ..     246     365 .. 0.92

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 7.9e-35
                     HHHHHHHHHHCCEEEEEEEETT..EEEEEEEE-CCG-BTTGGEEEEEETTEEE--HHHHHHHHHHHHCCSSSSSB-EEEEEEEESSGGEE-TSST CS
  DNA_mis_repair   1 iaavlgkevaenlleiekeeeq..lkieGfiskpelsrskrdkqflfvNgRlvkskelkkaireaYkellpkgrypvvvLnleidpeevDvNvhP 93 
                     i++++g++v+++l+e+e+ ee+  +k + + ++++++ +k +  +lf+N+R v+s +lkka++++Y+++lp+g  p+++L+l+idp++vDvNvhP
      CCE28687.1 246 IRQIYGSSVTNELIEFEAAEERwgFKAHVLATNANYHIKK-TVFLLFINNRCVESSQLKKALEQTYDSYLPRGGRPFIYLSLHIDPARVDVNVHP 339
                     689**************88888556777777777777766.88999************************************************* PP

                     T----EETTHHCHHHHHHHHHHHHH CS
  DNA_mis_repair  94 tKreVrfqdeeevieaieealkeal 118
                     tKreV+f +e+e+ +a+ ++l++ l
      CCE28687.1 340 TKREVHFLNEDEIGQAVCRELQSQL 364
                     *********************9987 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   1.1e-13   5.1e-10       5     100 ..      53     148 ..      49     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1.1e-13
  HATPase_c_3   5 kAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeak.rkstslGkkGi.GlklAslslgkkltvitkkegesst 100
                   Al el++N++dA ++  +i v++     + ++i+D+G G+++++l    + +t+sk +  ++  s+  +G+ G  lAs+s  ++l+v+tk++g++ +
   CCE28687.1  53 HALKELIENAVDAGSTALDILVKDG--GLKLLQITDNGCGIEKDDLAILCERHTTSKIKAfEDLSSIETYGFrGEALASISHIAHLSVTTKTKGSTLA 148
                  79*********************95..5799*****************9988888877543455556667777888*****************98764 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   6.5e-09   2.9e-05       7      64 ..      52     112 ..      48     156 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 6.5e-09
                 HHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH......H CS
   HATPase_c   7 rqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq......d 64 
                  +++++l++Nav++   ++ +++ +k + + + ++++DnG+Gi k+dl  l e++++      +
  CCE28687.1  52 VHALKELIENAVDA--GSTALDILVK-DGGLKLLQITDNGCGIEKDDLAILCERHTTskikafE 112
                 699**********7..5677777777.4468888***************666666554444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 5387.71
//
Query:       CCE28688.1  [L=705]
Description: uncharacterized protein CPUR_02376 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   15.9   0.3        1.1    9.7   0.1    3.9  3  HEAT      HEAT repeat
       0.88    8.8   6.9        1.3    8.3   6.9    1.2  1  BUD22     BUD22
        1.5    8.7  11.3        2.4    8.0  11.3    1.2  1  TFIIA     Transcription factor IIA, alpha/beta subunit
        2.2    6.4  10.1        3.4    5.8  10.1    1.2  1  Spc7_N    N-terminus of kinetochore NMS complex subunit Spc7


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00024       1.1       1      29 [.      38      65 ..      38      67 .. 0.92
   2 ?    1.5   0.0      0.11   4.9e+02       5      29 ..      83     107 ..      78     108 .. 0.78
   3 ?   -2.9   0.0       2.8   1.3e+04      20      30 ..     625     635 ..     625     636 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00024
                HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT  1 llPlllkllsDpspeVReaAakaLgalae 29
                +lP++++ l+  +p+ R++Aa a+++l++
  CCE28688.1 38 ILPVIQS-LRNADPKSRASAATAITNLVQ 65
                7999999.7******************97 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 l + l+D ++e R+a    L  la+
  CCE28688.1  83 LTQTLTDAAWESRAAGWGILQVLAQ 107
                 56669********998877777765 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.8
                 HHHHHHHHHHC CS
        HEAT  20 AakaLgalaev 30 
                 A++aL +l+ v
  CCE28688.1 625 AVEALNQLLDV 635
                 899***99876 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.9   0.00029       1.3     154     231 ..     351     424 ..     317     471 .. 0.48

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00029
       BUD22 154 kkkkkkkkeeeeeeesdkeeesedsed.....eekeeseddeeeeeededdedaeedeedeeaeerelaqydg.llasddeded 231
                 +kk++k+  e    ++d++e+ + + d     e     e d++++ee ++d+d +++++d++ +++++++  + + + dd d+d
  CCE28688.1 351 HKKREKAPVE----VDDEDEDMTMEVDgpdggE-----EMDQHQDEELAEDDD-NASSQDDDMDQDAMEADMDmVTGVDDADQD 424
                 1111111111....1122222222222211111.....111111111111111.112222333333333333325556666666 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  11.3   0.00054       2.4     257     372 ..     314     427 ..     286     434 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00054
       TFIIA 257 legelsaeeeagaqkeelsreeidrireealkakelekeskkkkr.aeessladlseilqlDGagddsde.eeeeeesdedsdsessddedeqveEDpl 353
                 +   +++++ a +   +++++ i +  ++a+  ++ ++ +kk+++   e + +d+   + +DG++  ++  + ++ee +ed+d+ ss+d+d  +++D++
  CCE28688.1 314 WSSPIEQQQLALETLASIGTALISSH-AQASG-SSPAAGHKKREKaPVEVDDEDEDMTMEVDGPDGGEEMdQHQDEELAEDDDNASSQDDD--MDQDAM 408
                 44445555545444444444444433.12222.222222222222122334447888999***8776666255666666666655555555..599999 PP

       TFIIA 354 NSd.DDvddeddddlfdtdn 372
                   d D v+  dd+d +d  n
  CCE28688.1 409 EADmDMVTGVDDAD-QDAAN 427
                 99999998888888.76655 PP

>> Spc7_N  N-terminus of kinetochore NMS complex subunit Spc7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  10.1   0.00075       3.4     498     564 ..     358     418 ..     338     432 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00075
      Spc7_N 498 aesdidedEemtmefTsvlGgvlnksafrakkaeeekeeseeserqeieedagdedddadmeiTgav 564
                   +  dedE+mtme     Gg    + + ++ a      + +++ +++++d +++  +adm++ ++v
  CCE28688.1 358 PVEVDDEDEDMTMEVDGPDGGEEMDQHQDEELA------EDDDNASSQDDDMDQDAMEADMDMVTGV 418
                 233347788888887777777544422221111......1222222222222333333677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 5120.54
//
Query:       CCE28689.1  [L=339]
Description: probable alcohol dehydrogenase homolog Bli-4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-27   94.8   0.7    2.9e-23   82.3   0.4    2.1  2  adh_short        short chain dehydrogenase
    4.3e-17   62.5   0.3    1.5e-15   57.4   0.3    2.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
      1e-07   32.1   0.1    1.9e-07   31.1   0.1    1.5  1  KR               KR domain
     0.0062   16.0   0.0      0.011   15.2   0.0    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.13   11.3   0.0       0.23   10.5   0.0    1.3  1  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.4   8.2e-27   2.9e-23       1     138 [.      39     184 ..      39     193 .. 0.84
   2 !   10.8   0.0     7e-05      0.25     147     189 ..     208     253 ..     201     258 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 8.2e-27
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EES....CHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdr....seekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpf 93 
                 kv++vtG+s+GIG+ +a++l+k++++ ++ ++     ++++  ++++ l+++  +k + + +D++++++v+ + e++++ +++ldvLvnNAG     ++
  CCE28689.1  39 KVAVVTGGSEGIGYGVAHTLLKNNIDKLFiLSLspkvTKDAKDTLIQDLGQAsVDKTVWLDCDLANWTKVKSVAEQIKESTDRLDVLVNNAGR--GIMT 135
                 89***********************988745551111445555677778888778899***********************************..3455 PP

                 GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH....HCTTEEEEEEEEGG CS
   adh_short  94 selseeewervievNltgvflltravlpaml....kqssGrIvnvsSva 138
                  +ls+  ++r +++N +g   lt ++lp m+    ++s  rIvnvsS+ 
  CCE28689.1 136 FKLSALGVDRHMAINHMGHAVLTSQLLPLMKktadAGSVVRIVNVSSNL 184
                 5788888************************866666666889999974 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 7e-05
                 HHHHHHHHHHHHHHHHHHHHHGGGT...EEEEEEEESSBSSHHHHH CS
   adh_short 147 aaYsAsKaavagltrslakelaptg...irvnavaPGlvdTdmake 189
                   Y+ sK a + ++r + + + ++g   i  nav+PG+v+T+  ke
  CCE28689.1 208 KQYGRSKLAGILYARYFDRNVTQKGnpnILMNAVHPGIVSTKQSKE 253
                 579*********************9999*************98776 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.3   4.3e-19   1.5e-15       4     180 ..      48     252 ..      43     262 .. 0.78

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 4.3e-19
                   TSHHHHHHHHHHHTT-E.EEEEESSGGH.HHHHHHHHHHTTSE.E.....EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   4 sgIGraiAkalaeeGae.vvltdlneea.kkrveelaeelgae.v.....lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsr 92 
                   +gIG+++A++l ++  + + +  l+ +  k++ ++l ++lg++ v     l cD ++ ++v++++e+++e++++lD+lvnnag        + ++s 
    CCE28689.1  48 EGIGYGVAHTLLKNNIDkLFILSLSPKVtKDAKDTLIQDLGQAsVdktvwLDCDLANWTKVKSVAEQIKESTDRLDVLVNNAGRGIM----TFKLSA 140
                   7***********99996599999999998889999999999554455569**********************************999....899*** PP

                   HHHHHHHHHHTHHHHHHHHHHHHHCTSC...CE...EEEEEEGGGT........SBSTTTT.......HHHHHHHHHHHHHHHHHHHHGGG...TEE CS
  adh_short_C2  93 eefdraldvnlyslfllakaalplmkeg...gs...ivnlssvgae........rvvpnyn.......aygaaKaalealtrylAvelgpk...giR 165
                    ++dr +++n  + + l+ ++lplmk++   gs   ivn+ss   +        +++p+ n        yg +K a +  +ry+ +++ +k   +i 
    CCE28689.1 141 LGVDRHMAINHMGHAVLTSQLLPLMKKTadaGSvvrIVNVSSNLHSsvpsnlqfKSLPDINtnmgakkQYGRSKLAGILYARYFDRNVTQKgnpNIL 237
                   **************************99899663337777776443111111112334333322223357778888888999998777665222699 PP

                   EEEEEE--BHCTGGG CS
  adh_short_C2 166 vNavspgpikTlaas 180
                    Nav+pg++ T+ ++
    CCE28689.1 238 MNAVHPGIVSTKQSK 252
                   999999999998754 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1   5.4e-11   1.9e-07       4      90 ..      42     130 ..      40     159 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 5.4e-11
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHH.HHHHHHHHTT-.EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedsk.aliaelealga.evevvaaDvsdkdavealleeikaeeppikGvihaAg 90 
                 ++tGG  g+G  +a++l+++   +l +ls s+++++d+k +li+ l +  + +  ++++D+++ ++v+++ e+ik++++++   ++ Ag
  CCE28689.1  42 VVTGGSEGIGYGVAHTLLKNNIDKLFILSLSPKVTKDAKdTLIQDLGQASVdKTVWLDCDLANWTKVKSVAEQIKESTDRLDVLVNNAG 130
                 89*****************************98777766268999*9998867889*********************999999998887 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     3e-06     0.011       2     159 ..      42     227 ..      41     253 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3e-06
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC............EEEE--TT-HH...HHHHHHHHH..T-SEEEE--S..---HHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl............elveldltdrs...alerlfkee..qpdavihlAa..vggvaass 81 
                 +VtG++  iG  +++ ll+++++ + + +ls +  + ++++l             + ++dl + +   ++++ +ke   + d+ ++ A+  + + + s+
  CCE28689.1  42 VVTGGSEGIGYGVAHTLLKNNIDKLFILSLSPKVTKDAKDTLiqdlgqasvdktVWLDCDLANWTkvkSVAEQIKEStdRLDVLVNNAGrgIMTFKLSA 140
                 8**********************99999998888888777779*********99888888888884445555566555799****99886777788888 PP

                 HSHHHHHHHHTHHHHHHHHHHH....HH....TCTEEEEEEE..GGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHH CS
   Epimerase  82 edpadfieknlqgtlnlleaar....ka....gvkrllflsS..sevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaq 159
                     + + +n +g   l + +     k+     v r++++sS  ++  + +  q k+    ++++   + Y+++Klag  +++++ + 
  CCE28689.1 141 LGVDRHMAINHMGHAVLTSQLLplmkKTadagSVVRIVNVSSnlHSSVPSNL-QFKSLPDINTNMGAKKQYGRSKLAGILYARYFDRN 227
                 88888888888876666555554444444333555*******5522333222.237777778889******************99876 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.5e-05      0.23       2      76 ..      42     115 ..      41     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.5e-05
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.. CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel 76 
                      +vtG++  iG  + +++lk+++ k+++l+ + +   + +++l ++l + +++ + v + +d+++ ++++++ e++
       CCE28689.1  42 VVTGGSEGIGYGVAHTLLKNNIDKLFILSLSPKVTKDAKDTLIQDLGQASVDKT-VWLDCDLANWTKVKSVAEQI 115
                      69************************************9999999999888555.66678888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 2734.20
//
Query:       CCE28690.1  [L=712]
Description: uncharacterized protein CPUR_02378 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 5651.18
//
Query:       CCE28691.1  [L=179]
Description: uncharacterized protein CPUR_02379 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-17   62.7   2.3    8.4e-16   58.2   0.3    2.1  2  DUF202           Domain of unknown function (DUF202)
     0.0065   15.8   1.8     0.0081   15.5   1.8    1.0  1  STE2             Fungal pheromone mating factor STE2 GPCR
  ------ inclusion threshold ------
      0.037   13.7   0.5      0.048   13.3   0.5    1.2  1  CPP1-like        Protein CHAPERONE-LIKE PROTEIN OF POR1-like
       0.09   12.7   0.1        0.2   11.6   0.1    1.6  1  Syndecan         Syndecan domain
        0.3   10.9   2.9         19    5.1   0.1    3.2  4  DUF3953          Protein of unknown function (DUF3953)
       0.31   10.7   4.3         19    4.8   4.7    2.4  2  Tetraspanin      Tetraspanin family
       0.43   10.6   7.1       0.11   12.5   4.0    1.6  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.3   3.3e-19   8.4e-16       1      67 [.      61     132 ..      61     133 .. 0.86
   2 ?    4.5   0.1     0.019        48      28      64 ..     141     173 ..     137     177 .. 0.54

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 3.3e-19
      DUF202   1 rdglAnERTfLaWlRtslalialglallrffl.....tgepsalgkilglilivlgiltllvglvrylrrqr 67 
                 rd++AnERTfL+ lR s+ +++l++a++ +f+     t  + +++k+lg++++vl++l+l++gl +y+++++
  CCE28691.1  61 RDHCANERTFLSHLRLSVFMAVLSVAITLSFHlrhqpTDLERRMAKPLGAVFWVLSLLMLALGLANYIQTVN 132
                 8***************************98776444433333359************************986 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.019
      DUF202  28 lrffltgepsalgkilgli..livlgiltllvglvrylr 64 
                 ++   tg++++   ilgl+  +i +++++llv +   ++
  CCE28691.1 141 VQ---TGWRTQ--LILGLValCIFATCMVLLV-VTKMRQ 173
                 44...677777..7888876344444444444.444443 PP

>> STE2  Fungal pheromone mating factor STE2 GPCR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.8   3.2e-06    0.0081     123     210 ..      80     167 ..      61     175 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.2e-06
                 XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        STE2 123 llvalieasLvlQvrvvfstlpkllrvvltalsallalvtvgfrlalavlniraileaeetsssswleslslilfavsInffslifvv 210
                 + v+++ + L +  r   + l++++  +l a+  +l+l+ +++ la+ ++ ++++   +  +++ w ++l l l+a+ I+  ++++ v
  CCE28691.1  80 MAVLSVAITLSFHLRHQPTDLERRMAKPLGAVFWVLSLLMLALGLANYIQTVNKYGRRAAIVQTGWRTQLILGLVALCIFATCMVLLV 167
                 45677888888899999999****************************************************************9975 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   1.9e-05     0.048     130     194 ..      96     163 ..      54     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
   CPP1-like 130 siyflnrKekklgravlltlvgLvvGlllGsllasllqvd...valsglsseellvslvtlvllwlvs 194
                     l+r++ k + av + l +L+++l l++ ++++ +     ++++  +  +l++ lv+l+++  + 
  CCE28691.1  96 QPTDLERRMAKPLGAVFWVLSLLMLALGLANYIQTVNKYGrraAIVQTGWRTQLILGLVALCIFATCM 163
                 4455899**************************9988766888999999**********999986554 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     8e-05       0.2      11      39 ..     148     176 ..     140     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8e-05
    Syndecan  11 aviggvvvgllfaillvlflvYRmrKKDE 39 
                  +i g v+  +fa ++vl++v +mr   E
  CCE28691.1 148 QLILGLVALCIFATCMVLLVVTKMRQQQE 176
                 6899*********************8765 PP

>> DUF3953  Protein of unknown function (DUF3953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.018        46      20      41 .]      67      88 ..      66      88 .. 0.90
   2 ?    3.4   0.1     0.026        67      22      38 ..     106     122 ..     102     125 .. 0.60
   3 ?    5.1   0.1    0.0074        19       5      22 ..     115     133 ..     111     135 .. 0.83
   4 ?   -0.4   0.1      0.38   9.8e+02       3      12 ..     149     158 ..     148     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.018
     DUF3953 20 enkfsGillilaalfvlfVsiv 41
                e++f++ l + ++ +vl+V+i+
  CCE28691.1 67 ERTFLSHLRLSVFMAVLSVAIT 88
                799999999***********95 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.026
     DUF3953  22 kfsGillilaalfvlfV 38 
                 k++G+++++ +l  l  
  CCE28691.1 106 KPLGAVFWVLSLLMLAL 122
                 56666666666655443 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0074
     DUF3953   5 LGlmaltiGieEfkke.nk 22 
                 L+l++l +G+ ++ ++ nk
  CCE28691.1 115 LSLLMLALGLANYIQTvNK 133
                 9*********998666665 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.38
     DUF3953   3 ifLGlmalti 12 
                 ++LGl+al i
  CCE28691.1 149 LILGLVALCI 158
                 899**99976 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.029        73     164     221 ..      15      88 ..       7     100 .. 0.68
   2 ?    4.8   4.7    0.0075        19      10      64 ..     110     162 ..     107     174 .. 0.51

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.029
                  SCGCC.........................................S--HHHHHHHHC--XXXXX.XXXX.XXXXXXXXXX CS
                  xxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin 164 svPesCclptpnqa.......................yleasksiytegCidklvnwiksnlkllgggvaalgliqlvgil 221
                    P+ Cc p+   +                        +e+++s  +++C ++     +  l +  ++v+++      +i+
   CCE28691.1  15 LAPKPCCVPKLVPTargqvaqkgptgsfftapllgplLFENETSDARDHCANERTFLSHLRLSVF-MAVLSV------AIT 88 
                  56777998888888888899999999999999999988888889999999887543333333333.222222......223 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0075
                  XXXXXXXXXXXXXXXXXXX..XXX.....................XXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  10 llfwligivllavGvwlrl..khaeaalacllsesaedpailaillivvGvllfllg 64 
                   +fw++++++la+G  +++    +++ ++++  ++ + ++ +   l +v   +f+++
   CCE28691.1 110 AVFWVLSLLMLALG-LANYiqTVNKYGRRAAIVQTGWRTQLI---LGLVALCIFATC 162
                  68************.333334222222333333333333333...333333333333 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.5   3.9e+03      74      80 ..      80      86 ..      70      98 .. 0.50
   2 ?   12.5   4.0   4.5e-05      0.11      42      95 ..     108     175 ..     104     179 .] 0.75

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.5
  Phage_holin_3_6 74 avllvla 80
                      ++l +a
       CCE28691.1 80 MAVLSVA 86
                     1111111 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.5e-05
  Phage_holin_3_6  42 aagvlallalllllvala............lalaa..lwlaaliva.avllvlagvlalvglkklkkak 95 
                      +++v+ +l+ll+l ++la            +a+ +   w   li++ ++l + a  ++l+ + k+++++
       CCE28691.1 108 LGAVFWVLSLLMLALGLAnyiqtvnkygrrAAI-VqtGWRTQLILGlVALCIFATCMVLLVVTKMRQQQ 175
                      578999999999999998777888887777666.356*******9945555556666666666777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1448.78
//
Query:       CCE28692.1  [L=539]
Description: uncharacterized protein CPUR_02380 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-19   70.6   0.0    1.3e-09   38.7   0.0    2.9  2  ABC_tran        ABC transporter
    5.7e-07   29.6   0.4      0.021   14.7   0.2    2.5  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    1.2e-05   25.5   0.1     0.0042   17.3   0.1    2.4  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
     0.0018   17.8   0.0     0.0032   17.0   0.0    1.3  1  Ploopntkinase1  P-loop Nucleotide Kinase1
  ------ inclusion threshold ------
      0.012   16.2   0.3      0.017   15.6   0.3    1.2  1  AAA_23          AAA domain
      0.032   14.0   0.0      0.066   13.0   0.0    1.5  1  AAA_29          P-loop containing region of AAA domain
       0.05   13.2   0.0       0.24   10.9   0.0    2.1  3  AAA_25          AAA domain
      0.065   12.9   0.0        0.1   12.3   0.0    1.2  1  ATP-synt_ab     ATP synthase alpha/beta family, nucleotide-bi
       0.11   11.1   0.0       0.15   10.7   0.0    1.1  1  AAA_13          AAA domain
       0.15   12.3   0.0       0.78   10.0   0.0    2.1  3  AAA_22          AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.1e-09     2e-06      85     136 ..      42      89 ..      11      90 .. 0.88
   2 !   38.7   0.0   7.1e-13   1.3e-09       4     136 ..     251     436 ..     249     437 .. 0.65

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.1e-09
                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++++ l+l++l d +v    + LS+G+ +r  +arall++p++lllDEp+
  CCE28692.1  42 LDRVVRDLRLEGLLDLPV----AFLSHGEGRRARIARALLTRPEVLLLDEPF 89 
                 677888899999999999....99***************************6 PP

  == domain 2  score: 38.7 bits;  conditional E-value: 7.1e-13
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE.............EETTCEGGG.........B-HHHCCHCEEEE-SS..--S-TTSBHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxx.........xxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGei.............lldgkdlke.........qeleslrkeigvlpqe..pqlfpeltvre 78 
                 + +++++ge+++i+G+nG+GK+t+++ll+ ++ p++ ++                     +          +    +++ig  + e   ++ + +tvr+
  CCE28692.1 251 LVWTVRRGERWGIFGPNGSGKTTIVSLLSSNH-PQAYSVpirlfgrsrlpepA-------SsssdtpkppLTVWDIEARIGHSSPEvhRHMPRSHTVRK 341
                 56899***********************9995.67777766777776655442.......033344553444444455555555445444444555666 PP

                 H................................HHHTCHHHHHHHSTTGG........................TTCBGESTTSGGS-HHHHHHHHHHH CS
                 x................................xxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  79 n................................esdeeiekalsklglke........................lkdtvvksspssLSgGqkqrvalar 121
                                                  e                                         ++t+      +LS   ++     r
  CCE28692.1 342 VienawaatfcthpqldgpakqkvdavllwfapE---------------LnhkprqpissalpphhdassalswADETRF----GELSFPAQRVALFLR 421
                 6777777777777777775544444444444441...............1445555555555555555554443334444....******9999999** PP

                 HHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxx RF
    ABC_tran 122 allkkpkllllDEpt 136
                 a++k+p++++lDE++
  CCE28692.1 422 AIIKNPDVVVLDEAF 436
                 *************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   1.1e-05     0.021     226     287 ..      51     109 ..      17     118 .. 0.76
   2 !   12.5   0.0   5.2e-05     0.093       4      20 ..     263     279 ..     262     316 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
      AAA_21 226 ngdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr 287
                  ++  +lp++ lS G  r ++++ all ++    +ll+DEp +gL+P  ++ l  ll +l++
  CCE28692.1  51 LEGLLDLPVAFLSHGEGRRARIARALLTRP---EVLLLDEPFLGLDPLTVAGLSPLLQSLAD 109
                 455666777777888888878888888888...9*************999999998877665 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.2e-05
      AAA_21   4 liGpNgsGKSnLLdald 20 
                 + GpNgsGK+++  +l+
  CCE28692.1 263 IFGPNGSGKTTIVSLLS 279
                 89**********99885 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0085        15      62      84 ..      78     100 ..      60     106 .. 0.81
   2 !   17.3   0.1   2.4e-06    0.0042      63      88 ..     426     451 ..     416     453 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0085
     SbcCD_C  62 palrlvfLDEAFsklDeesiatl 84 
                 +++++++LDE F +lD+ ++a l
  CCE28692.1  78 TRPEVLLLDEPFLGLDPLTVAGL 100
                 57999***********9777665 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.4e-06
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllell 88 
                 ++++v+LDEAFs++D+  ++++  +l
  CCE28692.1 426 NPDVVVLDEAFSGMDDAVRDKCALFL 451
                 6899****************998766 PP

>> Ploopntkinase1  P-loop Nucleotide Kinase1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.8e-06    0.0032      15      47 ..     256     288 ..     247     293 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.8e-06
  Ploopntkinase1  15 argelyyvkgsngsgkstvpsylaekdpeayvv 47 
                      rge + + g ngsgk+t+ s l+ + p+ay v
      CCE28692.1 256 RRGERWGIFGPNGSGKTTIVSLLSSNHPQAYSV 288
                     58999999***********************98 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.3   9.5e-06     0.017      24      36 ..     263     275 ..     261     279 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.5e-06
      AAA_23  24 ItGpNGaGKTTil 36 
                 I+GpNG+GKTTi+
  CCE28692.1 263 IFGPNGSGKTTIV 275
                 9***********8 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.7e-05     0.066      15      39 ..     251     275 ..     246     286 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.7e-05
      AAA_29  15 htieidlkgatlltGpsGsGKSTll 39 
                  ++++++ +   + Gp+GsGK+T++
  CCE28692.1 251 LVWTVRRGERWGIFGPNGSGKTTIV 275
                 5677776668889***********8 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         3   5.4e+03     136     155 ..     140     158 ..     102     161 .. 0.65
   2 ?   10.9   0.0   0.00014      0.24      10      54 ..     236     279 ..     227     282 .. 0.88
   3 ?   -2.5   0.0       1.7   3.1e+03     135     150 ..     421     434 ..     389     441 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3
      AAA_25 136 aieevegvrlvviDplsral 155
                 ++e+  g++ vv+D l + +
  CCE28692.1 140 QVES-MGPKDVVLDGLRKYV 158
                 3555.468889999887766 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00014
      AAA_25  10 vsvadlaapppprrwlvkgllpagelallaGapgtGKttlaldla 54 
                 ++++++++ +p+++ lv  + ++ge   ++G+ g+GKtt+++ l+
  CCE28692.1 236 QQTRQDDNHIPRKDGLVWTV-RRGERWGIFGPNGSGKTTIVSLLS 279
                 57889999************.59*****************98776 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.7
      AAA_25 135 aaieevegvrlvviDp 150
                 +ai   +++++vv+D 
  CCE28692.1 421 RAII--KNPDVVVLDE 434
                 3333..3489999995 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.6e-05       0.1       9      41 ..     253     285 ..     249     348 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.6e-05
                  S-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   9 fpivqGqrtlipgafgvGktvisqslskqsnsd 41 
                   ++ +G+r +i+g +g Gkt+i++ ls ++ ++
   CCE28692.1 253 WTVRRGERWGIFGPNGSGKTTIVSLLSSNHPQA 285
                  57899******************9999986555 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.4e-05      0.15      21      39 ..     263     281 ..     259     297 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.4e-05
      AAA_13  21 iYGwNGaGKTtLSrllrsl 39 
                 i+G NG+GKTt+ +ll+s 
  CCE28692.1 263 IFGPNGSGKTTIVSLLSSN 281
                 9**************9985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.5   4.5e+03      80      99 ..      70      87 ..      50     121 .. 0.71
   2 ?   10.0   0.0   0.00043      0.78      10      34 ..     263     287 ..     262     321 .. 0.84
   3 ?   -3.1   0.0       4.7   8.5e+03      91     100 ..     425     435 ..     411     439 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.5
      AAA_22 80 ealeqalraravielliiDE 99
                +++++al +r    +l++DE
  CCE28692.1 70 ARIARALLTRPE--VLLLDE 87
                667777777755..999998 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00043
      AAA_22  10 vtGesGtGKTtllrrlleqldeeak 34 
                 ++G+ G+GKTt +  l ++++++++
  CCE28692.1 263 IFGPNGSGKTTIVSLLSSNHPQAYS 287
                 89***************99988765 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4.7
      AAA_22  91 v.ielliiDEa 100
                 + + ++++DEa
  CCE28692.1 425 KnPDVVVLDEA 435
                 346799***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4088.36
//
Query:       CCE28693.1  [L=195]
Description: related to 20S proteasome maturation factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-44  149.1   0.1    7.3e-44  148.8   0.1    1.1  1  UMP1      Proteasome maturation factor UMP1


Domain annotation for each model (and alignments):
>> UMP1  Proteasome maturation factor UMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   0.1   4.1e-48   7.3e-44       1     118 []      69     193 ..      69     193 .. 0.93

  Alignments for each domain:
  == domain 1  score: 148.8 bits;  conditional E-value: 4.1e-48
        UMP1   1 psapglhdtlra..Glkslksq...lnssHpLesrlknweetqeklklemlrniyGlaePlrrqmElkivskterkPlalgss...nlhldiLtGkdes 91 
                 psapg+hdtlr+  G+++ ++q   ++s+HpLe+rlknwe+tqe++++e+lr+++G+aeP+rr+mE+kiv+++e++Pl lg+    ++h+diL+G++++
  CCE28693.1  69 PSAPGIHDTLRHgiGPSPHDAQankPSSTHPLEARLKNWEATQEAARMETLRRTFGSAEPIRRAMEMKIVRDGEWRPLELGGGglpSVHEDILRGREDT 167
                 6899********7777777777444699*****************************************************97788************* PP

        UMP1  92 idfeDvlndpeeseevkdvhsemErkl 118
                 i++eDv+++ ee++ v+ vh+emE+kl
  CCE28693.1 168 ITWEDVFTG-EEMRGVVGVHEEMENKL 193
                 *******97.9**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1658.80
//
Query:       CCE28694.1  [L=272]
Description: uncharacterized protein CPUR_02382 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-12   45.6   0.0    1.3e-11   44.6   0.0    1.6  1  Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
    0.00085   19.0   0.0     0.0017   18.1   0.0    1.5  1  ubiquitin    Ubiquitin family
    0.00089   19.8   0.0     0.0019   18.7   0.0    1.5  1  DUF2407      DUF2407 ubiquitin-like domain


Domain annotation for each model (and alignments):
>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   2.2e-15   1.3e-11      23      99 ..     175     247 ..     164     269 .. 0.85

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 2.2e-15
                  T-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE---SS----.XX CS
  Rad60-SLD_2  23 aatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvvrenlsekksekk 99 
                  + ++ +lke ++++W  d+e kp+s+ +++li  Gk+L++  +lk++++  +e+     v+H+++r++  ++++ k 
   CCE28694.1 175 SISIYTLKELILREWRSDWEAKPASPSSIRLIHFGKLLDDKEQLKKYQFS-AET---PNVVHMSIRPQDLDEEEPKS 247
                  46899******************************************775.566...4899**99998877766555 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.8e-07    0.0017      33      71 ..     190     237 ..     175     238 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.8e-07
                 T.......SSGGGEEEEETTEEE-TTSBHGGHTTSTT..EEEEEEESS CS
   ubiquitin  33 g.......ipaeqqrLiysGkvLedertleeygiqdg..stlhlvlrl 71 
                 +         ++++rLi+ Gk+L+d++ l+ y+   +  +++h+ +r+
  CCE28694.1 190 RsdweakpASPSSIRLIHFGKLLDDKEQLKKYQFSAEtpNVVHMSIRP 237
                 344444457899********************8877767999999986 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.2e-07    0.0019      19      72 ..     171     231 ..     158     261 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.2e-07
     DUF2407  19 pdpntttvagLkqliRerl.....paelasrrLrLIyaGrlLedttslasslklpees..v 72 
                 pdp ++++  Lk+li  +       + ++ + +rLI+ G+lL+d+++l++    +e++  v
  CCE28694.1 171 PDPFSISIYTLKELILREWrsdweAKPASPSSIRLIHFGKLLDDKEQLKKYQFSAETPnvV 231
                 477889999*****988875777666778899****************9987766554442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2148.51
//
Query:       CCE28695.1  [L=718]
Description: related to beta-adaptin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.6e-123  412.4   8.9   3.3e-123  412.0   8.9    1.0  1  Adaptin_N        Adaptin N terminal region
    8.1e-56  188.5   9.5    8.2e-54  182.0   0.2    3.8  4  Cnd1             non-SMC mitotic condensation complex subunit
      7e-14   52.0   4.9    7.7e-07   29.4   0.2    4.7  4  HEAT_2           HEAT repeats
    6.2e-10   38.5   4.0     0.0019   18.3   0.0    6.2  7  HEAT             HEAT repeat
    3.1e-06   27.6   2.6        2.7    8.6   0.0    6.5  6  HEAT_EZ          HEAT-like repeat
    0.00078   19.1   1.5       0.31   10.6   0.1    2.8  3  CLASP_N          CLASP N terminal
     0.0033   17.6   1.3       0.14   12.4   0.0    3.3  3  RTP1_C1          Required for nuclear transport of RNA pol II
     0.0082   16.2   0.4         14    5.8   0.0    4.2  4  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
  ------ inclusion threshold ------
        0.1   12.7   0.4        8.4    6.6   0.0    4.2  4  Arm              Armadillo/beta-catenin-like repeat
       0.15   11.8   0.2        4.1    7.1   0.0    3.0  3  DNA_alkylation   DNA alkylation repair enzyme
       0.19   11.6   1.8       0.42   10.5   0.6    2.2  2  Sec7_N           Guanine nucleotide exchange factor in Golgi 


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.0   8.9    2e-126  3.3e-123      17     522 ..      29     539 ..      16     541 .. 0.96

  Alignments for each domain:
  == domain 1  score: 412.0 bits;  conditional E-value: 2e-126
                 S...-SCHHHHHHHHHHHHHHHCT-.--GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHHHHHHHHCCC--CCC CS
   Adaptin_N  17 k...dddekkkeavkkliylialGe.dvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirglALrvLssirvpel 111
                     ++++ kk a+k++++ ++ ++ d+  lf++++ ++    +e+K++++lyl+++a  ++d+   ++  l +D++d+n+l+r+lALr++s i v+e 
  CCE28695.1  29 GkkdKNHSVKKVALKRIVANMTMSNnDMVALFPDIIACMHIPSLEIKKMCFLYLVNYARVRPDISVKAIPVLENDMEDKNPLVRALALRTMSYIHVKEF 127
                 23347999*********987765555*************************************9999******************************** PP

                 HHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCCHHHHHHHCCHHHHHHCS-HHH CS
   Adaptin_N 112 aedlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleei.kkndrlllkllpklvrrLcnllteldpwl 208
                 +++ +  ++++l+d +pyvrk+Aa +++kly+ d +l+++  l++++  ll d++p vv++A+a l  i ++n+ + l++   +++++  +l ++++w+
  CCE28695.1 128 VDATLSVVRRMLRDNDPYVRKTAAFCVAKLYDHDRKLVERSdLIDRLNYLLRDDNPTVVASALAGLMDIwERNEGIKLTIDYNNASKMVAILPDCSEWG 226
                 *********************************************************************99999998899999**************** PP

                 HHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST.......HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXT CS
   Adaptin_N 209 qvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapkne.......livlavnaLvrllsskdenlryvaLrtllkivkkepk 300
                 q++i++ l ++++qe+ e+  ++l e++ ++l++sn +V+l ++++i +l +  +       l+ ++   Lv+ll + +e ++y+aLr+ l i++++ +
  CCE28695.1 227 QTYILEALMSYVPQETGEA--ALLAERISPRLSHSNSSVVLTCIRVILYLLNYIAdekqitaLCRKLSPPLVTLLAKGPE-VQYLALRNALLILQRR-P 321
                 *******************..99*************************7777777777799999****************.****************.* PP

                 TTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHH CS
   Adaptin_N 301 avqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekfatdaewvldvllellslsgesvkdeive 399
                 +v ++d+++f++k++d+++++ ++l+l + l++e+N++e+++eL +y++e+ d  f++k+v+aIg+la+k+++ a+ ++d llel s++ +++++e+ +
  CCE28695.1 322 EVLKNDIRVFFCKYNDPIYVKVTKLELIFMLANENNIDEVLTELREYATEI-DVHFVRKAVRAIGKLAIKIEPAARECIDLLLELVSTKVTYIVQEATV 419
                 ***************************************************.999******************************************** PP

                 HHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT...HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHHHH CS
   Adaptin_N 400 virdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsntesasdllrslaekfvlesekvklqiltalvKlyltspdketqekliqlv 498
                 vi+++++k+p++ e+ii +L+e+l++++++ea+aa++W++G+y+++++n      ll+ ++ +f +e+++v+l++lta vKl+ + p  +++++l+  v
  CCE28695.1 420 VIKNIFRKYPNQYESIIGTLCEHLDSLDEPEAKAAMVWVIGQYADRIEN---SDALLEDFLYSFQEEPVEVQLALLTATVKLFIQRP--TKGQELVPKV 513
                 *************************************************...***********************************..5666999999 PP

                 HHHHH..XXSHHHHHHHHHHHHHHCC CS
   Adaptin_N 499 lslat..ssdlevrdRaveylqllss 522
                 l+ at  +++ ++rdRa++y++lls+
  CCE28695.1 514 LKWATeeTDNPDLRDRAYMYWRLLST 539
                 999999988**************986 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.077   1.2e+02      68     110 ..      31      73 ..      17     105 .. 0.72
   2 !  182.0   0.2     5e-57   8.2e-54       1     162 []     110     273 ..     110     273 .. 0.98
   3 ?   -0.2   0.0      0.55     9e+02     122     145 ..     273     295 ..     273     299 .. 0.89
   4 !    7.0   0.8    0.0034       5.5      14     155 ..     353     490 ..     342     499 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.077
        Cnd1  68 eDenprVvanalaalteiseksenaiynllpdiisklsdalne 110
                 +D+n++V + al  +    ++s+n ++ l+pdii  ++    e
  CCE28695.1  31 KDKNHSVKKVALKRIVANMTMSNNDMVALFPDIIACMHIPSLE 73 
                 5777777777777777777777777777777777766644334 PP

  == domain 2  score: 182.0 bits;  conditional E-value: 5e-57
        Cnd1   1 liRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilnd..mvkekgflselaklleDenprVvanalaalteiseksenaiynll 97 
                 l+Rala+rt+++i+v+++v+++++ +r+ L+D+dpyVRktaa++vakL+++d  +v+ ++++++l+ ll+D+np+Vva+ala l++i+e++e + +++ 
  CCE28695.1 110 LVRALALRTMSYIHVKEFVDATLSVVRRMLRDNDPYVRKTAAFCVAKLYDHDrkLVERSDLIDRLNYLLRDDNPTVVASALAGLMDIWERNEGIKLTID 208
                 79**********************************************777655999999*******************************9******* PP

        Cnd1  98 pdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikviLs 162
                  + +sk+++ l +csewgq++ile+L+sy+p+++ ea  l+e++ prl+h+ns+vvl++i+viL+
  CCE28695.1 209 YNNASKMVAILPDCSEWGQTYILEALMSYVPQETGEAALLAERISPRLSHSNSSVVLTCIRVILY 273
                 ***************************************************************97 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.55
        Cnd1 122 fLlsyipkdkqeaeslveklcprl 145
                 +Ll+yi+++kq +  l+ kl p l
  CCE28695.1 273 YLLNYIADEKQ-ITALCRKLSPPL 295
                 599********.*******99866 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0034
        Cnd1  14 rvpnlveylvepLrkrLkDedpyVRktaaivvakL.ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnec 111
                   +n +++++++Lr+  +  d +  + a+ ++ kL i+ +    ++ ++ l++l++ + + +v+ a  ++++i +k +n+      +ii  l ++l+++
  CCE28695.1 353 ANENNIDEVLTELREYATEIDVHFVRKAVRAIGKLaIKIEPAA-RECIDLLLELVSTKVTYIVQEATVVIKNIFRKYPNQY----ESIIGTLCEHLDSL 446
                 5678899999999999999999888889*******77777665.667*****************************86555....45566666666678 PP

        Cnd1 112 sewgqitilefLlsyipkdkqeaeslveklcprlqhansavvla 155
                 +e + +  +  ++ + ++  ++ + l+e     +q +  +v+la
  CCE28695.1 447 DEPEAKAAMVWVIGQYADRIENSDALLEDFLYSFQEEPVEVQLA 490
                 88888888888887777777778889999888888888888876 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.2   4.7e-10   7.7e-07       2      84 ..      98     190 ..      97     195 .. 0.80
   2 ?   -0.7   0.0       1.2   1.9e+03      20      71 ..     230     291 ..     213     297 .. 0.64
   3 !   11.9   0.1   0.00014      0.23      17      83 ..     345     418 ..     340     422 .. 0.80
   4 !    8.3   0.0    0.0018       2.9       4      83 ..     439     530 ..     436     534 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 4.7e-10
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp....ealpaLvellededpavRraaaeaLgai........gdpealpaLkellddddddvvReaAa 84 
                 ++L + + +d++p vr+ a+r++  i+ +     +l  ++++l+d dp+vR++aa   +++         +++ ++ L  ll+dd+  vv  a +
  CCE28695.1  98 PVLENDM-EDKNPLVRALALRTMSYIHVKefvdATLSVVRRMLRDNDPYVRKTAAFCVAKLydhdrklvERSDLIDRLNYLLRDDNPTVVASA-L 190
                 5666677.8***************999885565669999999*****************994433322235779********99999888665.3 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.2
      HEAT_2  20 airaLgrignpea......lpaLvellededpavRraaaeaL....gaigdpealpaLkell 71 
                 +++aL ++ ++e+       + + + l+++++ v  + ++ +      i+d++ + aL++ l
  CCE28695.1 230 ILEALMSYVPQETgeaallAERISPRLSHSNSSVVLTCIRVIlyllNYIADEKQITALCRKL 291
                 55555544444333334456667778888888888888875423336778888888888765 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00014
      HEAT_2  17 rraairaLg.rignpealpaLvellededpavRraaaeaLgaig......dpealpaLkellddddddvvReaA 83 
                 + + i  L+ + + +e+l  L+e+++  d +  r a++a+g+++        e +++L+el+ ++  ++v+ea+
  CCE28695.1 345 KLELIFMLAnENNIDEVLTELREYATEIDVHFVRKAVRAIGKLAikiepaARECIDLLLELVSTKVTYIVQEAT 418
                 5677888884456689*************************88655633245569******9999999999875 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0018
      HEAT_2   4 LlqalendpdpevrraairaLgrignp.....ealpaLvellededpavRraaaeaLgai......gdpealpaLkellddddd.dvvReaA 83 
                 L++ l +  +pe ++a ++++g+++++      +l+ ++   + e  +v+ a  +a +++      + +e +p  ++++++++d ++ R +A
  CCE28695.1 439 LCEHLDSLDEPEAKAAMVWVIGQYADRiensdALLEDFLYSFQEEPVEVQLALLTATVKLfiqrptKGQELVPKVLKWATEETDnPDLRDRA 530
                 77888778899***********88776542223344444444666679*********98877766645778888888887776647778776 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.7   4.3e+03      10      24 ..      31      45 ..      29      47 .. 0.84
   2 !    8.6   0.0    0.0015       2.5       2      24 ..      97     119 ..      96     122 .. 0.86
   3 !   18.3   0.0   1.2e-06    0.0019       3      29 ..     133     159 ..     132     160 .. 0.89
   4 ?    6.0   0.0      0.01        17       8      29 ..     177     198 ..     170     199 .. 0.85
   5 ?   -1.0   0.0       1.9   3.1e+03       8      24 ..     255     271 ..     250     277 .. 0.82
   6 ?   -2.6   0.0       5.9   9.7e+03      19      28 ..     379     388 ..     377     389 .. 0.83
   7 ?   -1.2   0.0       2.2   3.6e+03       2      28 ..     436     463 ..     435     465 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.7
                T-SSHHHHHHHHHHH CS
        HEAT 10 sDpspeVReaAakaL 24
                +D++ +V + A+k +
  CCE28695.1 31 KDKNHSVKKVALKRI 45
                699********9855 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0015
                 HHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaL 24 
                 +P+l + ++D++p VR+ A++++
  CCE28695.1  97 IPVLENDMEDKNPLVRALALRTM 119
                 68888889***********9986 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 1.2e-06
                 HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalae 29 
                  ++ ++l+D++p VR++Aa ++++l+ 
  CCE28695.1 133 SVVRRMLRDNDPYVRKTAAFCVAKLYD 159
                 67889*****************99976 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.01
                 HHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLgalae 29 
                 ll+D++p V ++A+  L ++ e
  CCE28695.1 177 LLRDDNPTVVASALAGLMDIWE 198
                 68***************99976 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.9
                 HHT-SSHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaL 24 
                  ls+++++V  ++++ +
  CCE28695.1 255 RLSHSNSSVVLTCIRVI 271
                 6899*****99999876 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 5.9
                 HHHHHHHHHH CS
        HEAT  19 aAakaLgala 28 
                  A++a+g+la
  CCE28695.1 379 KAVRAIGKLA 388
                 5999999987 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 2.2
                 HHHHHHHHT-.SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsD.pspeVReaAakaLgala 28 
                 + +l++ l + ++pe  +a ++ +g+ a
  CCE28695.1 436 IGTLCEHLDSlDEPEAKAAMVWVIGQYA 463
                 5677888877788888888888888765 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0017       2.7      28      53 ..      95     120 ..      83     122 .. 0.85
   2 !    7.3   0.0    0.0041       6.7      23      54 ..     125     156 ..     123     157 .. 0.80
   3 ?    0.8   0.1      0.45   7.3e+02      28      49 ..     169     190 ..     164     193 .. 0.80
   4 ?    1.5   0.1      0.28   4.6e+02      21      50 ..     287     311 ..     283     311 .. 0.87
   5 ?   -0.5   0.0       1.1   1.9e+03       6      37 ..     379     406 ..     376     419 .. 0.66
   6 ?    0.7   0.0      0.49     8e+02      27      54 ..     433     461 ..     426     462 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0017
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLg 53 
                 +++p L + ++d++++VRa A+++ +
  CCE28695.1  95 KAIPVLENDMEDKNPLVRALALRTMS 120
                 789*******************9976 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0041
     HEAT_EZ  23 qplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 + +v++ l    ++L+d ++ VR++Aa + ++
  CCE28695.1 125 KEFVDATLSVVRRMLRDNDPYVRKTAAFCVAK 156
                 5566777777789**************99776 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.45
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAa 49 
                 ++++ L  lL+dd+++V a A+
  CCE28695.1 169 DLIDRLNYLLRDDNPTVVASAL 190
                 677777779********87776 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.28
     HEAT_EZ  21 llqplvpeilpaLlalLnddsdeVRaaAag 50 
                 l+++l p ++ +L+     + +eV++ A++
  CCE28695.1 287 LCRKLSPPLVTLLA-----KGPEVQYLALR 311
                 5678889999****.....*******9986 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 1.1
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLlalL 37 
                  A++a+G la      ++p+  e +++Ll l 
  CCE28695.1 379 KAVRAIGKLA----IKIEPAARECIDLLLELV 406
                 5788887755....556666667777766555 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.49
     HEAT_EZ  27 peilpaLlalLnd.dsdeVRaaAagaLgn 54 
                 + i+  L+  L + d++e +aa ++ +g+
  CCE28695.1 433 ESIIGTLCEHLDSlDEPEAKAAMVWVIGQ 461
                 57888888888888999999999999998 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00019      0.31     130     205 ..      95     159 ..      76     172 .. 0.80
   2 ?   -2.8   0.1       2.3   3.8e+03      81     102 ..     277     298 ..     248     301 .. 0.50
   3 !    6.6   0.0     0.003       4.9      84     138 ..     387     439 ..     355     442 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
     CLASP_N 130 rilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffk 205
                 + + vl++ ++dKn+  R+ ++  ++ ++ +             +d+   +++++l D +p VR+ta  ++ ++++
  CCE28695.1  95 KAIPVLENDMEDKNPLVRALALRTMSYIHVKEF-----------VDATLSVVRRMLRDNDPYVRKTAAFCVAKLYD 159
                 445677888999999999988887777776666...........6888899****************999988886 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.3
     CLASP_N  81 aiqlkeqldpmveillptLlkl 102
                 +i  ++q+ +++++l p L++l
  CCE28695.1 277 YIADEKQITALCRKLSPPLVTL 298
                 3444555666666666655555 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.003
     CLASP_N  84 lkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsva 138
                 l  +++p ++  +++Ll+l++ +   i q+a+++++ ++++ +  ++  +++ ++
  CCE28695.1 387 LAIKIEPAARECIDLLLELVSTKVTYIVQEATVVIKNIFRKYP--NQYESIIGTL 439
                 3446999*********************************999..6666665555 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   8.4e-05      0.14       6      73 ..     102     163 ..      99     174 .. 0.87
   2 ?    0.9   0.0      0.31     5e+02      34      73 ..     241     280 ..     171     293 .. 0.60
   3 ?    0.1   0.1      0.55   8.9e+02      35      83 ..     392     443 ..     359     466 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.4e-05
     RTP1_C1   6 kdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpe 73 
                 +d++d+ + vra +l++++ +  k+       ++++l+++ ++L+d+d+Yv   a  ++++L d + +
  CCE28695.1 102 NDMEDKNPLVRALALRTMSYIHVKE------FVDATLSVVRRMLRDNDPYVRKTAAFCVAKLYDHDRK 163
                 68999************99876666......69******************99999999999988655 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.31
     RTP1_C1  34 avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpe 73 
                 ++ ++  +++ +   L++++s v L +i+++  L +++ +
  CCE28695.1 241 ETGEAALLAERISPRLSHSNSSVVLTCIRVILYLLNYIAD 280
                 4444445555566678888888999999888888776643 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.55
     RTP1_C1  35 vldiekilkllleaLkdedsYvYLnaikgLvaLadvfpee...vlklLleey 83 
                 +  +++ ++llle ++ + +Y+  +a  ++ ++  ++p++   ++ +L+e+ 
  CCE28695.1 392 EPAARECIDLLLELVSTKVTYIVQEATVVIKNIFRKYPNQyesIIGTLCEHL 443
                 4556778888888888888888888888888888888765222566666655 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.018        30      38      59 ..     139     160 ..     106     174 .. 0.82
   2 ?   -3.7   0.0       7.6   1.2e+04      22      49 ..     342     369 ..     336     370 .. 0.69
   3 ?   -0.7   0.0       0.9   1.5e+03      43      62 ..     411     430 ..     394     440 .. 0.80
   4 !    5.8   0.0    0.0085        14      25      86 ..     506     567 ..     492     578 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.018
  Atx10homo_assoc  38 iDdnnPfirewailairnLleg 59 
                      + dn+P++r+ a +++ +L ++
       CCE28695.1 139 LRDNDPYVRKTAAFCVAKLYDH 160
                      5689************999766 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.6
  Atx10homo_assoc  22 kvreldgleliLsqcniDdnnPfirewa 49 
                      kv +l+ + ++ ++ niD+    +re+a
       CCE28695.1 342 KVTKLELIFMLANENNIDEVLTELREYA 369
                      5666677777777777887777777766 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.9
  Atx10homo_assoc  43 PfirewailairnLlegnee 62 
                       +i + a++ i+n+  ++++
       CCE28695.1 411 TYIVQEATVVIKNIFRKYPN 430
                      69999********9988765 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0085
  Atx10homo_assoc  25 eldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLeakgvvdeevLeelgl 86 
                       ++ ++ +L+    + +nP +r++a +  r L  + ++++++v   ++  +++ e+Le+  l
       CCE28695.1 506 GQELVPKVLKWATEETDNPDLRDRAYMYWRLLSTDMNAAKQIVMGEKPAITAEAEKLEAPTL 567
                      56778999999999*****************************9999988888888876555 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.6   2.7e+03      18      33 ..     136     151 ..     129     151 .. 0.87
   2 ?   -3.6   0.0       8.3   1.4e+04      20      35 ..     177     192 ..     176     193 .. 0.79
   3 ?   -0.1   0.0      0.65   1.1e+03      15      22 ..     293     300 ..     280     309 .. 0.73
   4 ?    6.6   0.0    0.0052       8.4      13      40 ..     398     425 ..     394     426 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.6
                 HHHTTTSSHHHHHHHH CS
         Arm  18 vrLLssedeevqeeAa 33 
                  r+L++ d+ v++ Aa
  CCE28695.1 136 RRMLRDNDPYVRKTAA 151
                 6899*********997 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8.3
                 HTTTSSHHHHHHHHHH CS
         Arm  20 LLssedeevqeeAawA 35 
                 LL++++++v+  A++ 
  CCE28695.1 177 LLRDDNPTVVASALAG 192
                 7889999998888765 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.65
                 HHHHHHTT CS
         Arm  15 ppLvrLLs 22 
                 ppLv+LL 
  CCE28695.1 293 PPLVTLLA 300
                 9******8 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0052
                 HHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  13 avppLvrLLssedeevqeeAawALsNLa 40 
                 +++ L++L s++ + +++eA+  + N+ 
  CCE28695.1 398 CIDLLLELVSTKVTYIVQEATVVIKNIF 425
                 79************************96 PP

>> DNA_alkylation  DNA alkylation repair enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0025       4.1     128     191 ..     103     166 ..      74     168 .. 0.89
   2 ?   -1.6   0.0       1.1   1.8e+03     114     153 ..     176     215 ..     165     226 .. 0.76
   3 ?    0.8   0.1      0.21   3.4e+02      63     110 ..     483     532 ..     414     548 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0025
  DNA_alkylation 128 WaksenlWerRaAivatlklikktdlellleiaeelladkedfiqkAiGwaLrelsktdpdlve 191
                      ++++n  +r  A+ ++ +   k+ ++ +l+++ + l d++  ++k  + +  +l  +d++lve
      CCE28695.1 103 DMEDKNPLVRALALRTMSYIHVKEFVDATLSVVRRMLRDNDPYVRKTAAFCVAKLYDHDRKLVE 166
                     5789999****************************************99999999999999987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
  DNA_alkylation 114 lladkperrdllkeWaksenlWerRaAivatlklikktdl 153
                     +l++++++  ++ ++a   ++Wer  +i +t+ + +++++
      CCE28695.1 176 YLLRDDNPTVVASALAGLMDIWERNEGIKLTIDYNNASKM 215
                     4555577888999999999******999999998777554 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.21
  DNA_alkylation  63 perEerllAldlltqak...kklaeadlelyeklve.tinnWdlvDslaski 110
                     +  E +l+ l   ++ +   + + ++++++++k+++ + +n dl D+++  +
      CCE28695.1 483 EPVEVQLALLTATVKLFiqrPTKGQELVPKVLKWATeETDNPDLRDRAY--M 532
                     4455555544444444432233344478888888777888888888874..4 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.6   0.00026      0.42       8     116 ..     230     340 ..     227     380 .. 0.79
   2 ?   -0.9   0.1      0.85   1.4e+03      49     114 ..     360     427 ..     339     442 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00026
      Sec7_N   8 vfrdLcklinsaks......kpkfl.slaersktfsLeLlesvlsnhgdvfrkhpellqllkqklcplLlknlsespsfpvferslrivllLlkkfrse 99 
                 ++++L++ +  +++      +++++ +l++ +  + L  +  +l   + +    ++++ +l  kl p L+++l   + ++v  ++lr  ll+l++  + 
  CCE28695.1 230 ILEALMSYVP-QETgeaallAERISpRLSHSNSSVVLTCIRVILYLLNYIA--DEKQITALCRKLSPPLVTLL--AKGPEVQYLALRNALLILQRRPEV 323
                 5666666654.4434443333566667888888888999999998888765..8999999999**********..5788899999************** PP

      Sec7_N 100 LktEievflsllilill 116
                 Lk++i vf+   + ++ 
  CCE28695.1 324 LKNDIRVFFCKYNDPIY 340
                 *********98888875 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.85
      Sec7_N  49 dvfrkhpellqllkqklcplLlknls..espsfpvferslrivllLlkkfrseLktEievflsllili 114
                 +v+++  e+   +  + ++  ++ +   + +  p    ++ ++l L++   + +++E  v+++ +++ 
  CCE28695.1 360 EVLTELREYATEIDVHFVRKAVRAIGklAIKIEPAARECIDLLLELVSTKVTYIVQEATVVIKNIFRK 427
                 45555555555555555555555552222334445555666677777777777888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 5238.91
//
Query:       CCE28696.1  [L=185]
Description: uncharacterized protein CPUR_02384 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-49  166.8   6.8      2e-49  166.5   6.8    1.1  1  DUF1077   Protein of unknown function (DUF1077)


Domain annotation for each model (and alignments):
>> DUF1077  Protein of unknown function (DUF1077)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.5   6.8   1.1e-53     2e-49       3     116 ..      59     172 ..      57     174 .. 0.98

  Alignments for each domain:
  == domain 1  score: 166.5 bits;  conditional E-value: 1.1e-53
     DUF1077   3 keekeelkakkaweialapakslpmnlfmlYmsGnslqifsimmvlmllvnpikallsvnkaFkkleseksksklllqklvyvllqllllalglyklns 101
                 ++e+e+lk+kkawe+alap+k lpm+ +m+YmsGnslqifsimmv+m+++npi+ l+++n+aF+k++sek+  ++l++klvyv++ql++la+g++k+ns
  CCE28696.1  59 TDEMETLKVKKAWEVALAPVKALPMTGIMMYMSGNSLQIFSIMMVFMAFKNPIMGLMATNQAFEKFHSEKNAGQILQTKLVYVVMQLVALAVGVWKVNS 157
                 67899********************************************************************************************** PP

     DUF1077 102 mGLLPttssDwlafe 116
                 mGLLPtt+sDwl++e
  CCE28696.1 158 MGLLPTTRSDWLMWE 172
                 **************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1286.92
//
Query:       CCE28697.1  [L=367]
Description: related to syntaxin 18 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-10   40.1   0.1    8.5e-09   35.5   0.0    2.8  2  Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus
    0.00014   21.8   0.1     0.0039   17.1   0.0    2.6  2  SNARE          SNARE domain
  ------ inclusion threshold ------
      0.041   13.7   0.9      0.086   12.7   0.9    1.5  1  NACHT_N        N-terminal domain of NWD NACHT-NTPase
       0.32   11.5   3.3       0.23   12.0   1.4    1.7  2  DUF16          Protein of unknown function DUF16
        8.8    6.9   9.6        1.1    9.8   1.6    3.3  4  KELK           KELK-motif containing domain of MRCK Ser/Thr p


Domain annotation for each model (and alignments):
>> Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   2.4e-12   8.5e-09       1      84 [.      12      97 ..      12      98 .. 0.80
   2 ?    1.3   0.1      0.12   4.2e+02      28      65 ..     270     307 ..     247     310 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 2.4e-12
  Syntaxin-18_N  1 mDiTplFkasVktvkasssskseekeakkrkkkrlkkskekdeFikeAkeilkhItkLrkfLleirkaYlnv..rshl...........mtdqerdn 84
                   +D+T+ F+a+++++     ++ +         k      + d F+keA++i++hI +L k L+ +r+aYl++  ++++           +td+er++
     CCE28697.1 12 TDLTSTFNALLSQKG---ATAVS--------GKHALDVDTLDGFLKEAYRINSHIASLHKELKDVRQAYLSTapARRIpgqsaagkpqvLTDRERED 97
                   699999999999992...22222........33455778899******************************6533347888888888888888875 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.12
  Syntaxin-18_N  28 kkrkkkrlkkskekdeFikeAkeilkhItkLrkfLlei 65 
                    +++++ + k+++++ + ++ A + l  I++L+++L+++
     CCE28697.1 270 EQDNQDMVKHYESTLDKVRSAEQSLVEISELQSLLVNN 307
                    45667777788888888999999999*******99876 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.073   2.6e+02       5      31 ..     275     301 ..     274     302 .. 0.83
   2 !   17.1   0.0   1.1e-06    0.0039      13      50 ..     325     362 ..     315     363 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.073
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       SNARE   5 rIdtnVenaqsnveraqkeLkkavkyq 31 
                 ++  + e++ ++v++a + L+  ++ q
  CCE28697.1 275 DMVKHYESTLDKVRSAEQSLVEISELQ 301
                 6778889************99877666 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXX CS
       SNARE  13 aqsnveraqkeLkkavkyqksnRklkciillilviill 50 
                 +++nv +++keLkka+++ + +R   + + +++ ++++
  CCE28697.1 325 TTDNVGGGNKELKKAAQRPSAARYTFFAASGLCAFLVI 362
                 89***************************999999886 PP

>> NACHT_N  N-terminal domain of NWD NACHT-NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.9   2.4e-05     0.086      11      83 ..     269     341 ..     263     352 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.4e-05
     NACHT_N  11 lkeseaelvkeYekilseeeekesskkeeeseekeeeseeekrqeqlkrlvekglkrvekkkkakegiaeaae 83 
                 ++++++++vk+Ye +l++ +++e+s  e ++ ++   ++ +++++++++lv++ l+ +++    ++++++aa+
  CCE28697.1 269 FEQDNQDMVKHYESTLDKVRSAEQSLVEISELQSLLVNNLTTQSAHIEQLVSDSLATTDNVGGGNKELKKAAQ 341
                 6889************98888888888899999999********************99998877777777776 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.7   1.7e+04      55      65 ..     104     114 ..      90     129 .. 0.53
   2 ?   12.0   1.4   6.4e-05      0.23      17      76 ..     258     317 ..     241     339 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.7
                 HHHHHHHHHHH CS
       DUF16  55 qkvekqgekik 65 
                 q ++++++ i+
  CCE28697.1 104 QMIRELNASIR 114
                 33333333333 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 6.4e-05
                 TTB-BHHHHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DUF16  17 teYVTrkqlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqge 76 
                 te  T+ q + f ++n+  +k+ e ++dk     + l ++ e q   +++l+ +    ++
  CCE28697.1 258 TEGLTQEQVQMFEQDNQDMVKHYESTLDKVRSAEQSLVEISELQSLLVNNLTTQSAHIEQ 317
                 56689***********************99999999999999999999999876655555 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3   4.5e+03      26      40 ..      51      65 ..      42      68 .. 0.60
   2 ?   -0.6   0.2      0.51   1.8e+03      11      45 ..      90     124 ..      85     128 .. 0.77
   3 ?    9.8   1.6    0.0003       1.1       6      62 ..     263     319 ..     261     325 .. 0.90
   4 ?   -0.6   0.0      0.51   1.8e+03      28      49 ..     327     348 ..     309     355 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
        KELK 26 aqErlksqkkeLkda 40
                ++  + s +keLkd 
  CCE28697.1 51 INSHIASLHKELKDV 65
                555555666777764 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.51
        KELK  11 llkqEkeelqkelaeaqErlksqkkeLkdaisqrk 45 
                 l+++E+e++  + +++   l ++ + L da + r+
  CCE28697.1  90 LTDREREDVDVNAKQMIRELNASIRGLDDAEQLRR 124
                 56789999998888888888888888888877665 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0003
        KELK   6 ekqlrllkqEkeelqkelaeaqErlksqkkeLkdaisqrklamqefsevneklselr 62 
                 ++q+++++q+ +++ k ++ + ++++s ++ L +  + + l +++++  +  +++l 
  CCE28697.1 263 QEQVQMFEQDNQDMVKHYESTLDKVRSAEQSLVEISELQSLLVNNLTTQSAHIEQLV 319
                 689*******************************99999999999988887777765 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.51
        KELK  28 ErlksqkkeLkdaisqrklamq 49 
                 + +   +keLk a ++   a+ 
  CCE28697.1 327 DNVGGGNKELKKAAQRPSAARY 348
                 55556689***99998777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1091  (0.0608511); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2804.12
//
Query:       CCE28698.1  [L=437]
Description: probable aspartate aminotransferase, cytoplasmic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-86  290.2   0.0    2.7e-86  290.0   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.0   0.0   1.5e-90   2.7e-86       2     363 .]      57     429 ..      56     429 .. 0.96

  Alignments for each domain:
  == domain 1  score: 290.0 bits;  conditional E-value: 1.5e-90
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHH.HHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaeke.galaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllklnpg 93 
                    ++++Lg+++y++d++k ++lp+v+ka  e   +  + ++ey pi glpe+ ++ a+++   +s++l +kr ++v+++sG+ga+   + fl+k+  g
     CCE28698.1  57 IKVDLGIGAYRTDEAKpWVLPVVKKAD-EiLRNNPELNHEYAPIAGLPEFTSKAAELILgaDSPALVEKRATSVQTISGTGAVHLGALFLAKFYQG 151
                    689*************77777666665.54788888899********************9********************************7766 PP

                    -E.EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEE CS
  Aminotran_1_2  94 de.ilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDe 188
                     + +++++pt+a++k+i+ + g+ v  yp+ s+++ +ld+e++++a++ ap +++   ++l++++hNPtG+++tl+++++l+ l++++++++++D 
     CCE28698.1 152 NRtVYMSNPTWANHKQIFGNVGLGVADYPYFSKKTNGLDFEGMKAAIQGAPDRSI---ILLHACAHNPTGVDPTLDQWKELAVLIREKKHFPLFDC 244
                    544****************************************************...************************************** PP

                    TTTTCBSSSS..HTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH...........HHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 189 aYagfvfgsl..davatranveeepnllivgslsKafGlaGeRvGyilgna...........avvsqlrklsrpfls..ssllqaavaaalsdall 269
                    aY+gf++g+l  da+a+r +++++ ++++++s++K+fGl+GeR G++ ++            +++sql++l+r+ +s  + +++++va++l+d++l
     CCE28698.1 245 AYQGFASGNLakDAAAIRYFIQQGFETMVCQSFAKNFGLYGERAGCFHAVTgpgpeasstitRIASQLAILQRSEISnpPLYGARIVATVLNDDKL 340
                    ***********9**9**********************************999******************************************** PP

                    HHH...HHHHHHHHHHHHHHHHHHHHHHS....TEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHH CS
  Aminotran_1_2 270 kqs...eleemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteeelee 358
                     ++   +l +m  r++++r+ lr++L++l     +++++ q+gmf++t+ls+       +kL+e +++y+t+        ++Ri++Agl+++++++
     CCE28698.1 341 FAEweeNLRTMSGRIITMRDGLRSRLEKLgapgTWNHITDQIGMFSFTGLSEP----QVQKLREDYHIYMTK--------NGRISMAGLNSKNMDH 424
                    *****9********************999**********************99....6788***********........9*************** PP

                    HHHHH CS
  Aminotran_1_2 359 lveal 363
                    +++a+
     CCE28698.1 425 VADAI 429
                    **997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3197.59
//
Query:       CCE28699.1  [L=348]
Description: uncharacterized protein CPUR_02387 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2463.81
//
Query:       CCE28700.1  [L=518]
Description: probable nuclear export sequence-containing nonribosomal protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-77  258.2   3.5      1e-76  257.6   3.5    1.3  1  NMD3           NMD3 family
  ------ inclusion threshold ------
        0.4   11.1   1.6       0.97    9.9   0.3    2.3  2  Thioredoxin_2  Thioredoxin-like domain
        1.7    8.7   6.6         16    5.5   2.4    2.6  2  HypA           Hydrogenase/urease nickel incorporation, metal
        5.1    7.2  11.7         29    4.8   5.7    2.8  2  DZR            Double zinc ribbon


Domain annotation for each model (and alignments):
>> NMD3  NMD3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.6   3.5   2.3e-80     1e-76       1     243 []      25     255 ..      25     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 257.6 bits;  conditional E-value: 2.3e-80
        NMD3   1 CcrCGkeieeling...lCedCllkevditegiek.ievevCkeCgryl.pkgkWvkaeleseellaeclkklvekgLkvseeveevkvelvdaefiwt 94 
                 Cc+CG++i+ ++ +   lC +C++ +vdi++gi++ +++++C++C+r+l p  +Wv a  es+ella+clkkl  +gL+        kv++vda+f+wt
  CCE28700.1  25 CCNCGAPIDGTT-AtgaLCFNCVKLTVDISQGIQReATLNFCRDCDRWLlPPTSWVVAMPESRELLALCLKKL--RGLH--------KVRIVDASFVWT 112
                 ********6443.2367*********************************667********************..****........************ PP

        NMD3  95 ephskrikvkvtvqgevrgenetilqqevevevkvkrqqCprCsriagg.yyeaivQvRqkrelteeehkrtfelleqlilkhdahafiskikevkeGl 192
                 ephs+rikvk+t+q  v  + ++ lqq++ev ++v+ qqCp+C++++++  ++a+vQvRqk     + hkrtf++leqli kh+ah+++++i e+k+G+
  CCE28700.1 113 EPHSRRIKVKLTIQDAV--QDGVLLQQSFEVVYVVATQQCPECAKSYTAnVWRACVQVRQK-----VLHKRTFLFLEQLIMKHSAHKDTLNIREAKDGI 204
                 *****************..55999*************************9***********.....********************************* PP

        NMD3 193 DfyfgsksaArklveflksevggkvkeseklvsedkksgkevyrltysvrl 243
                 Df+f++k++A+k+++fl+s+v++kvk+s++l+s d+++ k++y+++ys ++
  CCE28700.1 205 DFFFSQKNQAEKFIDFLNSVVPVKVKNSQELISYDTHTAKRSYKFSYSAEI 255
                 ************************************************987 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00022      0.97       8      59 ..     141     203 ..     135     251 .. 0.86
   2 ?   -1.2   0.0       0.6   2.7e+03      22      57 ..     453     490 ..     446     505 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00022
  Thioredoxin_2   8 vlvvftdpdCpyCkklkk.elkel......ddvtvrvllfp....lkpsfepkavaiwcakek 59 
                    v++v+++ +Cp C+k ++ +++        + +++r++lf     +k s+++   +i  ak+ 
     CCE28700.1 141 VVYVVATQQCPECAKSYTaNVWRAcvqvrqKVLHKRTFLFLeqliMKHSAHKDTLNIREAKDG 203
                    89***************9998888899998999999999999998888888888888888875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.6
  Thioredoxin_2  22 klkkelkelddvtvrvllfp..lkpsfepkavaiwcak 57 
                    ++ ++++e+++++  ++l++   k+  ++++    +++
     CCE28700.1 453 LFLRDVEEDEELRAALALYKneKKQREQEEMSVAETTD 490
                    67788899999999988888854444444444444444 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   2.4    0.0036        16      65     102 ..      17      55 ..       6      69 .. 0.80
   2 ?    4.5   0.1    0.0077        35      53      85 ..     130     162 ..      87     179 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0036
                 EEE--EEEETTTS-EEECHHH.HHS-TTTSSS-EEEEES CS
        HypA  65 eevpvkvrCreCgkefeleek.alrCpkCgsadveivsG 102
                 +++ +++ C +Cg+ ++ +++  + C +C +  v+i +G
  CCE28700.1  17 QSTAATILCCNCGAPIDGTTAtGALCFNCVKLTVDISQG 55 
                 45677888999***99955544556***********999 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0077
                 CC.TTTT-EEEEEEE--EEEETTTS-EEECHHH CS
        HypA  53 egtvlegaeLeieevpvkvrCreCgkefeleek 85 
                 ++ vl + ++e+  v ++ +C eC k+++ +  
  CCE28700.1 130 QDGVLLQQSFEVVYVVATQQCPECAKSYTANVW 162
                 444555578889999999999999999986643 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   5.7    0.0064        29      14      37 ..      24      48 ..      15      77 .. 0.51
   2 ?    3.9   2.0     0.013        56      14      45 ..      64     165 ..      54     167 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0064
         DZR 14 fCseCgtklkavaa.edrCpsCgek 37
                 C +Cg++++ ++a    C +C + 
  CCE28700.1 24 LCCNCGAPIDGTTAtGALCFNCVKL 48
                5666666666555554455555333 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.013
         DZR  14 fCseCgtklkavaa.....................................................................edrCpsCgek.vdpea 42 
                 fC +C   l ++++                                                                      ++Cp+C ++ + + +
  CCE28700.1  64 FCRDCDRWLLPPTSwvvampesrellalclkklrglhkvrivdasfvwtephsrrikvkltiqdavqdgvllqqsfevvyvvaTQQCPECAKSyTANVW 162
                 566665555544445555555555555555555555556666666666666666666666666666666666667777777778999999999667778 PP

         DZR  43 rfC 45 
                 r C
  CCE28700.1 163 RAC 165
                 888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1190  (0.0663729); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3666.13
//
Query:       CCE28701.1  [L=326]
Description: uncharacterized protein CPUR_02389 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-07   28.8   0.0      4e-05   23.3   0.0    2.5  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.2e-09     4e-05       1      68 [.     127     207 ..     127     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.2e-09
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.........TTTSEEE.......EEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.........etgkskg.......fafVeFeskedAekAlealngkklggre 68 
                 ++++ +pp ++ + L+ l+s++G+ ++i l ++         +   s g        + +eF +k +A++A e lng+++gg++
  CCE28701.1 127 VYISRIPPGMKPSALRSLLSPYGKLNRIFLAPEdpsvrarrrK---SGGnkrvlftEGWIEFLKKKEAKAACELLNGQNIGGKK 207
                 89****************************9988987653332...2223333433689**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2259.28
//
Query:       CCE28702.1  [L=467]
Description: related to aldehyde dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.1e-129  431.5   0.0   3.5e-129  431.3   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
    0.00022   20.4   0.0    0.00048   19.3   0.0    1.6  1  LuxC      Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  431.3   0.0  3.9e-133  3.5e-129       7     461 ..       4     459 ..       1     460 [. 0.98

  Alignments for each domain:
  == domain 1  score: 431.3 bits;  conditional E-value: 3.9e-133
                 SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   7 etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelae 105
                 eti +i+P t+e+i   + ++a+d++   + A e+f++++k++++eR++i++++ + l++++ elae +t+++G p+a + +e++ ai+ ++y  +  +
  CCE28702.1   4 ETITTISPNTNEPILIRHGSSAADLQLLPKVATETFHKFRKTTLRERQDIVKRFLKELASHEAELAEELTAQMGRPIAFTGKEITTAIRRAEYLLKISD 102
                 6899*********************************************************************************************99 PP

                 H.HSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH- CS
      Aldedh 106 k.legevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealveh 203
                 + l+++  + ++g + ++r+ P+G v++I +WN+P l+++ +l+pa++aGN+v+lKP+++tp +a ++a+ f +aglP+gvl++ +    ++ e +v++
  CCE28702.1 103 DaLRDTDGEAEKGFKRFIRKVPIGPVLVIFAWNYPYLILVNSLIPAILAGNSVILKPSPQTPTIAEHVAKYFTKAGLPDGVLQYFHCGSPSIMESVVRD 201
                 967776677789*************************************************************************************** PP

                 TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TT CS
      Aldedh 204 pevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpl 302
                 p++++v ftGs++ g  i+kaa++++ +v lElGGk+p+ + +d+D+  a+e+iv ga++n+GQ C++++r++v+e ++d+fv++++e +k  k+gdp+
  CCE28702.1 202 PRIAHVCFTGSVAGGLAIQKAASDRIVNVGLELGGKDPAYIRDDVDIAWAAEEIVDGAVFNSGQSCCSVERVYVHERVHDAFVSAVQEVLKGYKLGDPF 300
                 *************************************************************************************************** PP

                 STT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEE CS
      Aldedh 303 dedtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaag 400
                 d++t+vGP++s+++++++e+++e+a ++gak  +  +   ++ + kg+fv+Pt+l++v+++m++++eE+FGPV++v+k+k++ eai ++Nd+e+GL+a+
  CCE28702.1 301 DKATHVGPVVSKRSQATIEAHIEDALKKGAKDATPENeSFRNPPPKGNFVKPTLLTGVDHSMTVMTEETFGPVIPVMKVKSDSEAIGLMNDSEFGLTAS 399
                 **********************************7776889999******************************************************* PP

                 EE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEE CS
      Aldedh 401 vftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevkt 461
                 ++tkd ++   +ae++eaG+v +N+    +++  +++ +k+Sg G++ g+ g+e++++ k+
  CCE28702.1 400 IWTKDTDKGYALAEEVEAGTVFVNRCDFPSPDL-AWTACKNSGKGQTLGRFGFEQFVKSKS 459
                 **************************9999999.**********************99986 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   5.4e-08   0.00048      71     141 ..     103     177 ..      44     295 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.4e-08
        LuxC  71 eiLdeflktke...ksyekaqprglvlhvlsgNvpllp.vmsilqglLvknvnllkvSssdpflaaallksladv 141
                 ++L++ + ++e   k++++ +p g vl +++ N p l+ v s++ ++L++n  +lk+S + p +a  ++k + + 
  CCE28702.1 103 DALRDTDGEAEkgfKRFIRKVPIGPVLVIFAWNYPYLIlVNSLIPAILAGNSVILKPSPQTPTIAEHVAKYFTKA 177
                 5666666444445689*******************7762679***************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3281.98
//
Query:       CCE28703.1  [L=107]
Description: uncharacterized protein CPUR_02391 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 845.33
//
Query:       CCE28704.1  [L=454]
Description: related to phosphomevalonate kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-16   58.2   3.8    7.3e-16   58.2   3.8    2.0  2  GHMP_kinases_N  GHMP kinases N terminal domain
    2.8e-07   30.8   0.0    5.9e-07   29.8   0.0    1.5  1  GHMP_kinases_C  GHMP kinases C terminal
     0.0042   17.0   3.4      0.011   15.7   3.4    1.7  1  DUF3439         Domain of unknown function (DUF3439)


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   3.8   1.2e-19   7.3e-16      11      66 .]     174     240 ..     167     240 .. 0.88
   2 ?   -2.8   0.0       1.3   7.8e+03      51      65 ..     257     271 ..     252     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.2e-19
                     TSSSCHHHHHHHHHHHHHHHHTTEHHHH............HHHHHHHHHHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N  11 gaGLGSSAAlavalvaAllallglslee............aklaleaerlaqggngsggDvaasvyGg 66 
                     ++GLGSSAAl++al+a ll+++ l+l+             ++la+ a+++aqg++gsg+Dvaa+vyG+
      CCE28704.1 174 KTGLGSSAALVTALTASLLSHY-LPLSVfdvtspsgrrtlHNLAQAAHCAAQGKVGSGFDVAAAVYGS 240
                     79****************9999.77633444667888999**************************95 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
                     HHHHHSHHHHHHHHS CS
  GHMP_kinases_N  51 ggngsggDvaasvyG 65 
                      g+++  D+ asv  
      CCE28704.1 257 AGSPGFSDQLASVVD 271
                     4889999**999865 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   9.9e-11   5.9e-07      17      71 ..     358     410 ..     347     421 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 9.9e-11
  GHMP_kinases_C  17 lnlsqrselkavvgilppeleellealselG.algaklsGaGgGptvfalfkdkde 71 
                     ++++     + +v+i+p++++ell+als++  ++g++++GaGg ++++ l +d++e
      CCE28704.1 358 IRDMGT---RSEVPIEPESQTELLDALSAVEgVYGGVVPGAGGFDALVLLMRDDEE 410
                     555555...559***************99999*******************77776 PP

>> DUF3439  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   3.4   1.8e-06     0.011      48      82 ..     139     173 ..     105     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.8e-06
     DUF3439  48 tttttttttttmpttttlptttkmsmvkvplvppe 82 
                  tt++tttttt  ttt  p t ++s   vpl   +
  CCE28704.1 139 QTTSSTTTTTTTTTTTQEPPTGRFSKFAVPLSGAN 173
                 467777777777899999************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3628.71
//
Query:       CCE28705.1  [L=1176]
Description: uncharacterized protein CPUR_02393 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-50  167.3   7.4      3e-08   33.7   0.0   14.4 16  PPR_2     PPR repeat family
      7e-35  116.8  18.2      5e-07   29.5   0.0   14.1 16  PPR       PPR repeat
    9.4e-32  108.9   0.0    7.2e-05   22.8   0.0   10.9 12  PPR_3     Pentatricopeptide repeat domain
      4e-19   68.0  15.7    9.5e-08   31.6   0.2   10.6 14  PPR_1     PPR repeat
    5.4e-16   58.6  15.7    3.1e-07   30.0   0.0    5.8  6  PPR_long  Pentacotripeptide-repeat region of PRORP
     0.0045   16.9   2.9         29    5.0   0.0    5.4  5  TPR_7     Tetratricopeptide repeat
  ------ inclusion threshold ------
        0.1   12.9   0.0       0.63   10.4   0.0    2.3  2  COMMD1_N  COMMD1 N-terminal domain
       0.17   12.3   0.0        1.3    9.4   0.0    2.6  2  RPM2      Mitochondrial ribonuclease P subunit (RPM2)
        5.6    7.5  11.1        4.8    7.8   0.0    5.7  5  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00059       1.2      14      47 ..     240     273 ..     236     276 .. 0.91
   2 !   33.1   0.0   2.3e-11   4.6e-08       1      46 [.     262     312 ..     262     316 .. 0.92
   3 ?   -1.3   0.0       1.3   2.5e+03      12      26 ..     355     369 ..     354     370 .. 0.92
   4 !   22.7   0.0   4.2e-08   8.4e-05       5      50 .]     384     429 ..     381     429 .. 0.97
   5 !    7.9   0.0    0.0017       3.4       4      28 ..     418     442 ..     415     445 .. 0.90
   6 ?   -1.4   0.0       1.4   2.8e+03       5      28 ..     466     489 ..     463     493 .. 0.77
   7 ?    3.8   0.0     0.034        68      17      47 ..     739     769 ..     734     772 .. 0.90
   8 !    7.6   0.0    0.0022       4.4       8      45 ..     810     847 ..     805     851 .. 0.91
   9 ?    1.5   0.0      0.18   3.6e+02      21      38 ..     862     879 ..     858     880 .. 0.90
  10 !   33.7   0.0   1.5e-11     3e-08       1      50 []     877     926 ..     877     926 .. 0.96
  11 !   25.5   0.2   5.6e-09   1.1e-05       3      30 ..     914     941 ..     912     948 .. 0.93
  12 !   22.7   0.0     4e-08     8e-05       6      47 ..     953     995 ..     951     998 .. 0.93
  13 ?    0.3   0.0      0.42   8.3e+02       3      27 ..    1022    1047 ..    1020    1054 .. 0.88
  14 ?    3.3   0.0     0.047        94       5      39 ..    1061    1095 ..    1057    1095 .. 0.88
  15 !    8.7   0.0     0.001         2       7      28 ..    1098    1119 ..    1095    1130 .. 0.84
  16 !    8.7   0.0   0.00099         2       5      34 ..    1129    1158 ..    1126    1160 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00059
       PPR_2  14 ckkgkveeAfklfneMkkrglePnsyTysilikg 47 
                  ++g+  e   +f+ M+  g +P+++ y+ l+++
  CCE28705.1 240 SQDGQHVEIPAVFEAMVASGATPTASAYNALLSA 273
                 68899999999********************987 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 2.3e-11
       PPR_2   1 pdvvtyNtlIsglc.....kkgkveeAfklfneMkkrglePnsyTysilik 46 
                 p   +yN+l+s+ +     + + v++A+++f +Mk+r + P+  Ty il+ 
  CCE28705.1 262 PTASAYNALLSATMhlpikRIEVVSKALDVFADMKRRRVAPDCDTYDILVG 312
                 56789*************88999**************************85 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.3
       PPR_2  12 glckkgkveeAfklf 26 
                  lc++ +++ A++lf
  CCE28705.1 355 ILCEDDRLDLAIQLF 369
                 58************9 PP

  == domain 4  score: 22.7 bits;  conditional E-value: 4.2e-08
       PPR_2   5 tyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglck 50 
                 ty +lIs+++  ++v++ ++lf+ M++++ + +s+ ys++i++++k
  CCE28705.1 384 TYHHLISACAASERVSDMLRLFEHMESNKKPASSSLYSSMITAFAK 429
                 9******************************************997 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.0017
       PPR_2   4 vtyNtlIsglckkgkveeAfklfne 28 
                   y ++I++++k+g++ +A++ + e
  CCE28705.1 418 SLYSSMITAFAKNGNLVSAVECYTE 442
                 5699*****************9976 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 1.4
       PPR_2   5 tyNtlIsglckkgkveeAfklfne 28 
                 +y ++I+++    k   A k++++
  CCE28705.1 466 VYAAVINAYIVSDKDGGAKKFYDK 489
                 799******977777777777775 PP

  == domain 7  score: 3.8 bits;  conditional E-value: 0.034
       PPR_2  17 gkveeAfklfneMkkrglePnsyTysilikg 47 
                  +v++A++ ++ M++    P  +Ty  li++
  CCE28705.1 739 SRVNDALECLHSMRRARTHPRYITYAKLITA 769
                 5799*********************999987 PP

  == domain 8  score: 7.6 bits;  conditional E-value: 0.0022
       PPR_2   8 tlIsglckkgkveeAfklfneMkkrglePnsyTysili 45 
                 ++I ++++ g+ e A    +e  + g +P++ Ty   i
  CCE28705.1 810 AMIGACLTLGHRERAENYHDELLQMGSRPSANTYGLYI 847
                 8*********************************7666 PP

  == domain 9  score: 1.5 bits;  conditional E-value: 0.18
       PPR_2  21 eAfklfneMkkrglePns 38 
                 eA+++f++ k  g++P++
  CCE28705.1 862 EALRIFHKAKADGVQPTA 879
                 9***************97 PP

  == domain 10  score: 33.7 bits;  conditional E-value: 1.5e-11
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglck 50 
                 p  + yN+lI  l k++++ee++  f+eM++ ++  +s+Ty ++i++lc+
  CCE28705.1 877 PTAFLYNALIGKLGKARRIEECLLYFQEMRSLNVNLTSVTYGTVINALCR 926
                 66789********************************************7 PP

  == domain 11  score: 25.5 bits;  conditional E-value: 5.6e-09
       PPR_2   3 vvtyNtlIsglckkgkveeAfklfneMk 30 
                 +vty t+I++lc+ g++++A +lf+eM+
  CCE28705.1 914 SVTYGTVINALCRVGDYKMAEDLFHEME 941
                 7**************************7 PP

  == domain 12  score: 22.7 bits;  conditional E-value: 4e-08
       PPR_2   6 yNtlIsglck.kgkveeAfklfneMkkrglePnsyTysilikg 47 
                 yN++++ +++ k++  + ++ +  M++r +eP+s+Ty  li+ 
  CCE28705.1 953 YNSIMQFFLTtKRDKAKVIQYYLRMQSRRIEPTSHTYKLLIDT 995
                 9*******976999***************************96 PP

  == domain 13  score: 0.3 bits;  conditional E-value: 0.42
       PPR_2    3 vvtyNtlIsgl.ckkgkveeAfklfn 27  
                  +v y +lI++  c   +++ A klf+
  CCE28705.1 1022 SVHYASLIHARgCILDDMDGAKKLFD 1047
                  6889999999989999*********8 PP

  == domain 14  score: 3.3 bits;  conditional E-value: 0.047
       PPR_2    5 tyNtlIsglckkgkveeAfklfneMkkrglePnsy 39  
                   y +l  +++ + +vee   ++ +M+++ +  ++y
  CCE28705.1 1061 LYQALFEAMVANHRVEETEAVLTQMRDHRVALSPY 1095
                  6999***********************99987765 PP

  == domain 15  score: 8.7 bits;  conditional E-value: 0.001
       PPR_2    7 NtlIsglckkgkveeAfklfne 28  
                  NtlI g   +++v++A ++f+ 
  CCE28705.1 1098 NTLIRGWSAQNNVDKARQFFDA 1119
                  ********************85 PP

  == domain 16  score: 8.7 bits;  conditional E-value: 0.00099
       PPR_2    5 tyNtlIsglckkgkveeAfklfneMkkrgl 34  
                  ty ++  +++ + + e A  + +eM++rg+
  CCE28705.1 1129 TYEAMTRAYLAAQQHENAEGVVEEMRRRGF 1158
                  899999***********************7 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.5   2.9e+03      10      30 ..     239     259 ..     238     259 .. 0.89
   2 ?   -2.9   0.0       5.6   1.1e+04       2       9 ..     266     273 ..     265     273 .. 0.85
   3 ?    4.2   0.0     0.031        61      17      30 ..     286     299 ..     284     300 .. 0.88
   4 ?   -1.7   0.0       2.3   4.6e+03      10      24 ..     356     370 ..     355     374 .. 0.89
   5 !   14.9   0.0   1.2e-05     0.024       2      29 ..     384     411 ..     383     412 .. 0.95
   6 !   16.0   0.1   5.3e-06      0.01       2      25 ..     419     442 ..     418     446 .. 0.91
   7 ?    2.0   0.0      0.15     3e+02       2      28 ..     466     492 ..     465     494 .. 0.90
   8 ?    0.4   0.0      0.49   9.8e+02      15      28 ..     740     753 ..     738     755 .. 0.87
   9 ?    2.4   0.0      0.11   2.3e+02       5      30 ..     810     835 ..     808     836 .. 0.94
  10 ?   -1.4   0.0       1.9   3.7e+03      18      31 .]     862     875 ..     859     875 .. 0.87
  11 !   21.4   0.1   9.9e-08    0.0002       2      30 ..     881     909 ..     880     910 .. 0.94
  12 !   29.5   0.0   2.5e-10     5e-07       1      27 [.     915     941 ..     915     943 .. 0.96
  13 ?   -0.6   0.0         1     2e+03      12      26 ..    1035    1049 ..    1034    1054 .. 0.78
  14 ?    0.3   0.0      0.53   1.1e+03       3      30 ..    1062    1089 ..    1061    1090 .. 0.87
  15 !    7.1   0.0    0.0037       7.3       4      24 ..    1098    1118 ..    1095    1120 .. 0.93
  16 !   12.8   0.0   5.4e-05      0.11       2      31 .]    1129    1158 ..    1128    1158 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.5
         PPR  10 ycknGkleeAlelfkeMkekG 30 
                 +++ G++ e   +f+ M+ +G
  CCE28705.1 239 LSQDGQHVEIPAVFEAMVASG 259
                 57899999*********9887 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.6
         PPR   2 tynslIsg 9  
                 +yn+l+s+
  CCE28705.1 266 AYNALLSA 273
                 7****997 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.031
         PPR  17 eeAlelfkeMkekG 30 
                 ++Al++f +Mk++ 
  CCE28705.1 286 SKALDVFADMKRRR 299
                 79**********97 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2.3
         PPR  10 ycknGkleeAlelfk 24 
                 +c   +l+ A++lf 
  CCE28705.1 356 LCEDDRLDLAIQLFG 370
                 79999********96 PP

  == domain 5  score: 14.9 bits;  conditional E-value: 1.2e-05
         PPR   2 tynslIsgycknGkleeAlelfkeMkek 29 
                 ty  lIs+++ + +++++l+lf+ M+++
  CCE28705.1 384 TYHHLISACAASERVSDMLRLFEHMESN 411
                 9************************986 PP

  == domain 6  score: 16.0 bits;  conditional E-value: 5.3e-06
         PPR   2 tynslIsgycknGkleeAlelfke 25 
                  y+s+I +++knG+l  A+e++ e
  CCE28705.1 419 LYSSMITAFAKNGNLVSAVECYTE 442
                 5*******************9976 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.15
         PPR   2 tynslIsgycknGkleeAlelfkeMke 28 
                 +y ++I++y  + k   A+++++++++
  CCE28705.1 466 VYAAVINAYIVSDKDGGAKKFYDKIVS 492
                 5889******************99876 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.49
         PPR  15 kleeAlelfkeMke 28 
                 ++ +Ale+++ M++
  CCE28705.1 740 RVNDALECLHSMRR 753
                 7899********98 PP

  == domain 9  score: 2.4 bits;  conditional E-value: 0.11
         PPR   5 slIsgycknGkleeAlelfkeMkekG 30 
                 ++I ++   G  e A+ +++e++++G
  CCE28705.1 810 AMIGACLTLGHRERAENYHDELLQMG 835
                 7*********************9988 PP

  == domain 10  score: -1.4 bits;  conditional E-value: 1.9
         PPR  18 eAlelfkeMkekGi 31 
                 eAl++f++ k +G+
  CCE28705.1 862 EALRIFHKAKADGV 875
                 9*******999886 PP

  == domain 11  score: 21.4 bits;  conditional E-value: 9.9e-08
         PPR   2 tynslIsgycknGkleeAlelfkeMkekG 30 
                  yn+lI  ++k++++ee+l +f+eM++ +
  CCE28705.1 881 LYNALIGKLGKARRIEECLLYFQEMRSLN 909
                 6*************************987 PP

  == domain 12  score: 29.5 bits;  conditional E-value: 2.5e-10
         PPR   1 vtynslIsgycknGkleeAlelfkeMk 27 
                 vty ++I+++c+ G++++A++lf+eM+
  CCE28705.1 915 VTYGTVINALCRVGDYKMAEDLFHEME 941
                 8*************************7 PP

  == domain 13  score: -0.6 bits;  conditional E-value: 1
         PPR   12 knGkleeAlelfkeM 26  
                     +++ A++lf+  
  CCE28705.1 1035 ILDDMDGAKKLFDTV 1049
                  5679********965 PP

  == domain 14  score: 0.3 bits;  conditional E-value: 0.53
         PPR    3 ynslIsgycknGkleeAlelfkeMkekG 30  
                  y +l  + + n ++ee + ++ +M+++ 
  CCE28705.1 1062 YQALFEAMVANHRVEETEAVLTQMRDHR 1089
                  778899999999************9875 PP

  == domain 15  score: 7.1 bits;  conditional E-value: 0.0037
         PPR    4 nslIsgycknGkleeAlelfk 24  
                  n+lI+g +  +++++A ++f+
  CCE28705.1 1098 NTLIRGWSAQNNVDKARQFFD 1118
                  9******************97 PP

  == domain 16  score: 12.8 bits;  conditional E-value: 5.4e-05
         PPR    2 tynslIsgycknGkleeAlelfkeMkekGi 31  
                  ty ++ ++y  + ++e A+ + +eM+++G+
  CCE28705.1 1129 TYEAMTRAYLAAQQHENAEGVVEEMRRRGF 1158
                  999*************************97 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0009       1.8      27      59 ..     241     273 ..     234     276 .. 0.83
   2 !   13.1   0.0   3.8e-05     0.076      33      60 ..     287     314 ..     281     317 .. 0.91
   3 !    9.7   0.0   0.00045      0.89      14      62 ..     381     429 ..     373     430 .. 0.84
   4 ?    1.1   0.0      0.22   4.3e+02      18      37 ..     420     439 ..     415     445 .. 0.86
   5 ?   -3.8   0.0       7.1   1.4e+04      15      25 ..     589     599 ..     587     601 .. 0.81
   6 ?    4.7   0.0     0.016        33      32      59 ..     742     769 ..     727     773 .. 0.89
   7 ?   -1.1   0.0         1     2e+03      20      55 ..     810     845 ..     809     852 .. 0.87
   8 !   18.3   0.0   9.4e-07    0.0019      10      62 ..     835     891 ..     827     892 .. 0.74
   9 !   22.8   0.0   3.6e-08   7.2e-05       3      60 ..     902     960 ..     900     963 .. 0.95
  10 !    8.7   0.0   0.00089       1.8      18      59 ..     953     995 ..     952     997 .. 0.74
  11 ?    4.7   0.0     0.016        32       9      46 ..    1053    1090 ..    1044    1117 .. 0.89
  12 ?    4.5   0.0     0.018        36      17      45 ..    1129    1157 ..    1126    1159 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0009
       PPR_3  27 nagnkklalevlermkkkgikPtvvtyNailgv 59 
                 + g    +  v+e m   g +Pt   yNa+l++
  CCE28705.1 241 QDGQHVEIPAVFEAMVASGATPTASAYNALLSA 273
                 5566667788*********************97 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.8e-05
       PPR_3  33 lalevlermkkkgikPtvvtyNailgvi 60 
                  al v++ mk  +++P  +ty ++ g+ 
  CCE28705.1 287 KALDVFADMKRRRVAPDCDTYDILVGLL 314
                 5899********************9986 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00045
       PPR_3  14 dvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgvigg 62 
                 +  tY hL++a+a      ++l+ +e m+ ++   +   y++++ ++ +
  CCE28705.1 381 SAETYHHLISACAASERVSDMLRLFEHMESNKKPASSSLYSSMITAFAK 429
                 5669*************************99966666778888877765 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.22
       PPR_3  18 YthLLtayanagnkklalev 37 
                 Y +++ta+a++gn+  a e 
  CCE28705.1 420 YSSMITAFAKNGNLVSAVEC 439
                 999**********9988775 PP

  == domain 5  score: -3.8 bits;  conditional E-value: 7.1
       PPR_3  15 vvtYthLLtay 25 
                  + Y hLL+ +
  CCE28705.1 589 ANKYWHLLSTC 599
                 589*****987 PP

  == domain 6  score: 4.7 bits;  conditional E-value: 0.016
       PPR_3  32 klalevlermkkkgikPtvvtyNailgv 59 
                 ++ale l  m+  +  P  +ty  ++ +
  CCE28705.1 742 NDALECLHSMRRARTHPRYITYAKLITA 769
                 5799*******************99976 PP

  == domain 7  score: -1.1 bits;  conditional E-value: 1
       PPR_3  20 hLLtayanagnkklalevlermkkkgikPtvvtyNa 55 
                 +++ a+   g +++a++  +++ + g +P+  ty  
  CCE28705.1 810 AMIGACLTLGHRERAENYHDELLQMGSRPSANTYGL 845
                 5788999999********************999975 PP

  == domain 8  score: 18.3 bits;  conditional E-value: 9.4e-07
       PPR_3  10 gikldvvtYthLLtayanagn....kklalevlermkkkgikPtvvtyNailgvigg 62 
                 g +++ +tY   +t  + ag+       al+++ + k +g++Pt   yNa++g  g+
  CCE28705.1 835 GSRPSANTYGLYITTLKDAGKpvdeAGEALRIFHKAKADGVQPTAFLYNALIGKLGK 891
                 55667777766666666665522215679***********************98876 PP

  == domain 9  score: 22.8 bits;  conditional E-value: 3.6e-08
       PPR_3   3 lremerkgikldvvtYthLLtayanagnkklalevlermk.kkgikPtvvtyNailgvi 60 
                 ++em   ++ l  vtY + ++a  ++g++k a+  + +m+ ++  +P    yN+i++ +
  CCE28705.1 902 FQEMRSLNVNLTSVTYGTVINALCRVGDYKMAEDLFHEMEaQVNYRPRPAPYNSIMQFF 960
                 79*************************************96789************876 PP

  == domain 10  score: 8.7 bits;  conditional E-value: 0.00089
       PPR_3  18 YthLLtayana.gnkklalevlermkkkgikPtvvtyNailgv 59 
                 Y+++++ +  + ++k  + +   rm+  +i+Pt  ty  ++ +
  CCE28705.1 953 YNSIMQFFLTTkRDKAKVIQYYLRMQSRRIEPTSHTYKLLIDT 995
                 788888754431455556666679**************99976 PP

  == domain 11  score: 4.7 bits;  conditional E-value: 0.016
       PPR_3    9 kgikldvvtYthLLtayanagnkklalevlermkkkgi 46  
                  + +++d   Y +L +a++ +   +  + vl +m+  ++
  CCE28705.1 1053 RLVRVDALLYQALFEAMVANHRVEETEAVLTQMRDHRV 1090
                  4589999***************************9987 PP

  == domain 12  score: 4.5 bits;  conditional E-value: 0.018
       PPR_3   17 tYthLLtayanagnkklalevlermkkkg 45  
                  tY ++ +ay  a+  + a+ v+e+m+  g
  CCE28705.1 1129 TYEAMTRAYLAAQQHENAEGVVEEMRRRG 1157
                  899**********************9876 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         2     4e+03       2      15 ..     259     272 ..     258     273 .. 0.83
   2 ?   -3.1   0.1       3.4   6.7e+03      23      34 .]     285     296 ..     285     296 .. 0.88
   3 ?    0.3   0.0       0.3   5.9e+02       3      14 ..     300     311 ..     298     314 .. 0.87
   4 ?    2.7   0.0      0.05     1e+02      17      30 ..     356     369 ..     355     371 .. 0.94
   5 ?    2.9   0.0     0.046        91       9      34 .]     384     409 ..     380     409 .. 0.94
   6 !    8.3   0.0   0.00093       1.9      10      28 ..     420     438 ..     416     442 .. 0.93
   7 ?   -1.6   0.0       1.2   2.3e+03      22      34 .]     740     752 ..     738     752 .. 0.89
   8 !   11.3   0.0   0.00011      0.21       1      33 [.     873     905 ..     873     906 .. 0.90
   9 !   31.6   0.2   4.8e-11   9.5e-08       3      34 .]     910     941 ..     908     941 .. 0.94
  10 ?    0.8   0.0      0.21   4.1e+02       2      15 ..     981     994 ..     980     996 .. 0.89
  11 ?   -1.6   0.0       1.1   2.3e+03      22      31 ..    1038    1047 ..    1022    1048 .. 0.64
  12 ?   -3.2   0.1       3.6   7.2e+03      22      34 .]    1074    1086 ..    1074    1086 .. 0.92
  13 !    8.5   0.0   0.00082       1.6      11      31 ..    1098    1118 ..    1098    1119 .. 0.97
  14 ?   -2.0   0.1       1.6   3.2e+03      25      34 .]    1145    1154 ..    1144    1154 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
                 S----HHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLId 15 
                 G  P++  YN L++
  CCE28705.1 259 GATPTASAYNALLS 272
                 66899999****97 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.4
                 HHHHHHHHHHHH CS
       PPR_1  23 vdeAfelfdeMe 34 
                 v +A+++f +M+
  CCE28705.1 285 VSKALDVFADMK 296
                 679******996 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.3
                 ----HHHHHHHH CS
       PPR_1   3 lkPdvvTYNtLI 14 
                 + Pd+ TY +L+
  CCE28705.1 300 VAPDCDTYDILV 311
                 78********97 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.05
                 HHHTS-HHHHHHHH CS
       PPR_1  17 lCkaGrvdeAfelf 30 
                 lC + r+d A++lf
  CCE28705.1 356 LCEDDRLDLAIQLF 369
                 8************9 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.046
                 HHHHHHHHHHHTS-HHHHHHHHHHHH CS
       PPR_1   9 TYNtLIdGlCkaGrvdeAfelfdeMe 34 
                 TY  LI+++    rv + ++lf++Me
  CCE28705.1 384 TYHHLISACAASERVSDMLRLFEHME 409
                 9999*********************7 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 0.00093
                 HHHHHHHHHHTS-HHHHHH CS
       PPR_1  10 YNtLIdGlCkaGrvdeAfe 28 
                 Y+++I ++ k+G++  A+e
  CCE28705.1 420 YSSMITAFAKNGNLVSAVE 438
                 9***************997 PP

  == domain 7  score: -1.6 bits;  conditional E-value: 1.2
                 -HHHHHHHHHHHH CS
       PPR_1  22 rvdeAfelfdeMe 34 
                 rv++A+e +  M+
  CCE28705.1 740 RVNDALECLHSMR 752
                 9******999996 PP

  == domain 8  score: 11.3 bits;  conditional E-value: 0.00011
                 SS----HHHHHHHHHHHHHTS-HHHHHHHHHHH CS
       PPR_1   1 kGlkPdvvTYNtLIdGlCkaGrvdeAfelfdeM 33 
                 +G++P+++ YN LI  l ka r++e +  f eM
  CCE28705.1 873 DGVQPTAFLYNALIGKLGKARRIEECLLYFQEM 905
                 69*********************9988777777 PP

  == domain 9  score: 31.6 bits;  conditional E-value: 4.8e-11
                 ----HHHHHHHHHHHHHTS-HHHHHHHHHHHH CS
       PPR_1   3 lkPdvvTYNtLIdGlCkaGrvdeAfelfdeMe 34 
                 ++ + vTY t+I++lC+ G+ + A++lf eMe
  CCE28705.1 910 VNLTSVTYGTVINALCRVGDYKMAEDLFHEME 941
                 67889**************************7 PP

  == domain 10  score: 0.8 bits;  conditional E-value: 0.21
                 S----HHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLId 15 
                  ++P+  TY  LId
  CCE28705.1 981 RIEPTSHTYKLLID 994
                 589**********8 PP

  == domain 11  score: -1.6 bits;  conditional E-value: 1.1
                  -HHHHHHHHH CS
       PPR_1   22 rvdeAfelfd 31  
                  ++d A +lfd
  CCE28705.1 1038 DMDGAKKLFD 1047
                  6777888877 PP

  == domain 12  score: -3.2 bits;  conditional E-value: 3.6
                  -HHHHHHHHHHHH CS
       PPR_1   22 rvdeAfelfdeMe 34  
                  rv+e + ++ +M+
  CCE28705.1 1074 RVEETEAVLTQMR 1086
                  79999*******7 PP

  == domain 13  score: 8.5 bits;  conditional E-value: 0.00082
                  HHHHHHHHHTS-HHHHHHHHH CS
       PPR_1   11 NtLIdGlCkaGrvdeAfelfd 31  
                  NtLI G   +++vd+A ++fd
  CCE28705.1 1098 NTLIRGWSAQNNVDKARQFFD 1118
                  9*******************8 PP

  == domain 14  score: -2.0 bits;  conditional E-value: 1.6
                  HHHHHHHHHH CS
       PPR_1   25 eAfelfdeMe 34  
                   A+ +++eM+
  CCE28705.1 1145 NAEGVVEEMR 1154
                  6999*****7 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00051         1      13     102 ..     231     316 ..     220     327 .. 0.80
   2 !   13.9   0.7   1.3e-05     0.025      27     114 ..     362     441 ..     348     455 .. 0.83
   3 ?   -2.5   0.1       1.3   2.6e+03      66      90 ..     547     571 ..     529     599 .. 0.57
   4 ?   -0.7   0.0      0.38   7.5e+02     108     139 ..     743     774 ..     736     792 .. 0.76
   5 !   30.0   0.0   1.5e-10   3.1e-07      18     172 ..     850     998 ..     836    1020 .. 0.87
   6 !   11.9   0.1   5.3e-05      0.11      25     155 ..    1037    1157 ..    1032    1161 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00051
                 HHHHHHHHHHHHT-HHHHHHHHHHHHHSSS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHH CS
    PPR_long  13 elrrqldkCskekDaaaAlelydkavaegvrlaqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaa 102
                  +  +l k s+++   +  ++++++va+g + ++  yn+ll      + + + k+ + +++++ vf++mk + v+p   t+  l+ l a+
  CCE28705.1 231 TFADRLLKLSQDGQHVEIPAVFEAMVASGATPTASAYNALLSA----TMHLPIKRIEVVSKALDVFADMKRRRVAPDCDTYDILVGLLAS 316
                 555566677777777777799********99999****99853....3455567778999***************999999888877765 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHSSS--.-HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHH CS
    PPR_long  27 aaaAlelydkavaegvrl.aqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaakedgdlafelvk 114
                 +  A++l+ ++++ +v++ ++ +y+ l+  c+++e+         +++ ++ fe+m++++ +++ + +++++   a++++   a e  +
  CCE28705.1 362 LDLAIQLFGSSIDADVAMySAETYHHLISACAASER---------VSDMLRLFEHMESNKKPASSSLYSSMITAFAKNGNLVSAVECYT 441
                 5569********9887653899*********87743.........567899*********************99999998777766555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.3
                 THHHHHHHHHHHHHHHHHTT----H CS
    PPR_long  66 kknkalargfevfeamkakgvspnE 90 
                  +n+ala++ ev++++ a+  + + 
  CCE28705.1 547 ADNNALATATEVYNSIVADPQTVAT 571
                 3445556666666555553333333 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.38
                 HHHHHHHHHHHH-S---HHHHHHHHHHHHHTT CS
    PPR_long 108 lafelvkemekagvsPrLRsyaPaLaayckag 139
                  a e  ++m++a  +Pr  +ya +++a ++ +
  CCE28705.1 743 DALECLHSMRRARTHPRYITYAKLITAASREK 774
                 57778899999999999999999988766544 PP

  == domain 5  score: 30.0 bits;  conditional E-value: 1.5e-10
                 HHHHHHHT-.HHHHHHHHHHHHHSSS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHH CS
    PPR_long  18 ldkCskekD.aaaAlelydkavaegvrlaqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaakedgdlafelvke 115
                 l++  k  D a +Al ++ ka+a+gv+ ++  yn+l+  + ka+          +++ +  f++m++ +v+    t+ +++      +d  +a++l +e
  CCE28705.1 850 LKDAGKPVDeAGEALRIFHKAKADGVQPTAFLYNALIGKLGKAR---------RIEECLLYFQEMRSLNVNLTSVTYGTVINALCRVGDYKMAEDLFHE 939
                 5556665552668************************9998884.........36778899************************************** PP

                 HH.HH-S---HHHHHHHHHHHHHT.T-HHHHHHHHHHHHHCT----HHHHHHHHHHHHH CS
    PPR_long 116 me.kagvsPrLRsyaPaLaaycka.gdadkaleveehlkasgveleEaelaaLLkvsak 172
                 me +++  Pr   y+ +++ +  + +d  k ++   ++++  +e++ + ++ L++  a+
  CCE28705.1 940 MEaQVNYRPRPAPYNSIMQFFLTTkRDKAKVIQYYLRMQSRRIEPTSHTYKLLIDTHAT 998
                 *86889************999765157788899999************99999887665 PP

  == domain 6  score: 11.9 bits;  conditional E-value: 5.3e-05
                  T-HHHHHHHHHHHHHSS.S---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
    PPR_long   25 kDaaaAlelydkavaeg.vrlaqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaakedgdlafelvkemekag 120 
                   D+ +A +l+d +v++  vr+ +  y++l   +++          + ++++  v ++m+ + v+ +  +  +l+r  +a+++ d+a +    +  ++
  CCE28705.1 1037 DDMDGAKKLFDTVVSDRlVRVDALLYQALFEAMVAN---------HRVEETEAVLTQMRDHRVALSPYIANTLIRGWSAQNNVDKARQFFDAVPIYK 1124
                  58899999******987799******9999877544.........245677789******************************************* PP

                  S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT CS
    PPR_long  121 vsPrLRsyaPaLaayckagdadkaleveehlkasg 155 
                   +P   +y+ +  ay  a++++ a  v e ++  g
  CCE28705.1 1125 REPS--TYEAMTRAYLAAQQHENAEGVVEEMRRRG 1157
                  ***6..9**********************998765 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.46   9.3e+02      10      32 ..     428     452 ..     425     456 .. 0.74
   2 ?    5.0   0.0     0.014        29       8      32 ..     814     838 ..     808     841 .. 0.86
   3 ?    4.7   0.0     0.018        37       8      24 ..     923     939 ..     922     944 .. 0.89
   4 ?   -2.2   0.0       2.9   5.8e+03       9      23 ..    1104    1118 ..    1102    1120 .. 0.86
   5 ?    1.1   0.1      0.26   5.2e+02       1      23 [.    1129    1151 ..    1129    1153 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.46
       TPR_7  10 srlGdyeeAielyeq..sLaltkdp 32 
                  + G+   A+e+y++   La++ d 
  CCE28705.1 428 AKNGNLVSAVECYTEyrDLAIAADK 452
                 56788889******98877777665 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.014
       TPR_7   8 lysrlGdyeeAielyeqsLaltkdp 32 
                 ++  lG++e+A+ ++ ++L++ ++p
  CCE28705.1 814 ACLTLGHRERAENYHDELLQMGSRP 838
                 57779************99887766 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.018
       TPR_7   8 lysrlGdyeeAielyeq 24 
                 + +r+Gdy+ A++l+ +
  CCE28705.1 923 ALCRVGDYKMAEDLFHE 939
                 789**********9965 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.9
       TPR_7    9 ysrlGdyeeAielye 23  
                  +s++++ ++A +++ 
  CCE28705.1 1104 WSAQNNVDKARQFFD 1118
                  899*******99986 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.26
       TPR_7    1 aLlnLarlysrlGdyeeAielye 23  
                  ++ ++ r+y + +++e+A+++ e
  CCE28705.1 1129 TYEAMTRAYLAAQQHENAEGVVE 1151
                  67899*************98766 PP

>> COMMD1_N  COMMD1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00031      0.63      33      85 ..     290     341 ..     281     347 .. 0.91
   2 ?   -2.3   0.0       2.7   5.5e+03      54      97 ..    1065    1107 ..    1043    1109 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00031
    COMMD1_N  33 elypdvsedefaalvekmksLlksiasadmdlaQLeafLtaqtkkqggalsae 85 
                 ++++d+++  +a   + ++ L++  as +++++ L+a+L+ + k+ gg + +e
  CCE28705.1 290 DVFADMKRRRVAPDCDTYDILVGLLASRSLEVSHLKAALEVKRKRFGG-MDQE 341
                 69****************************************999998.6554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.7
    COMMD1_N   54 lksiasadmdlaQLeafLtaqtkkqggalsaeqaaalakFWksh 97  
                  l ++  a+  +   ea+Lt+ ++ +  als   a+ l + W ++
  CCE28705.1 1065 LFEAMVANHRVEETEAVLTQ-MRDHRVALSPYIANTLIRGWSAQ 1107
                  44455566667777888875.46666678888888888888765 PP

>> RPM2  Mitochondrial ribonuclease P subunit (RPM2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00066       1.3      29     118 ..     233     319 ..     212     320 .. 0.81
   2 ?   -2.0   0.0       2.2   4.5e+03      88     111 ..     971     994 ..     963     996 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00066
        RPM2  29 ikeiekiyekkeynkinalyksLkrneivpslelfekvLksivkrdlDnedidnklveLLtvyqDiisnklkPnkeiyeivlesLlkgsi 118
                  +++ k  ++ ++ +i a+++++   +  p  + ++  L + ++  +   ++ +   + L v+ D+   ++ P+ ++y+i ++ L ++s+
  CCE28705.1 233 ADRLLKLSQDGQHVEIPAVFEAMVASGATPTASAYNALLSATMHLPIKRIEVVS---KALDVFADMKRRRVAPDCDTYDILVGLLASRSL 319
                 455555556677888999999999999999999999999999988887776655...56899*********************9999886 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.2
        RPM2  88 LtvyqDiisnklkPnkeiyeivle 111
                 ++ y  + s ++ P++ +y++ ++
  CCE28705.1 971 IQYYLRMQSRRIEPTSHTYKLLID 994
                 56677788889********99886 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.5       5.8   1.1e+04      31      64 ..     139     173 ..     132     176 .. 0.64
   2 ?   -0.2   0.1      0.73   1.4e+03      23      65 ..     453     505 ..     419     507 .. 0.69
   3 ?    2.1   0.0      0.14   2.8e+02      24      54 ..    1058    1088 ..    1036    1099 .. 0.71
   4 ?    7.8   0.0    0.0024       4.8      24      62 ..    1093    1131 ..    1070    1137 .. 0.75
   5 ?    5.4   0.1     0.013        26      37      62 ..    1106    1131 ..    1106    1157 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.8
      TPR_19  31 LAeallalgqldeAealLdalpeedpdd.aryasL 64 
                  Aea  ++ ++ eA +  + + +ed+   a + +L
  CCE28705.1 139 AAEAAAEAAETVEALESRSVISAEDQAVlAHVDAL 173
                 57777777778888777777777777644555555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.73
      TPR_19  23 k.........naearllLAeallalgqldeAealLdalpeedpdd.aryasLl 65 
                 +         +ae+ ++ ++a++ +     A++  d++  e+    a+y+ ++
  CCE28705.1 453 GrattlrdrlDAEVYAAVINAYIVSDKDGGAKKFYDKIVSEYGERaAEYKEAM 505
                 33444444447888888889999999999999999999999998768887665 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.14
      TPR_19   24 naearllLAeallalgqldeAealLdalpee 54  
                  +a +  +L ea++a+ +++e ea+L +  ++
  CCE28705.1 1058 DALLYQALFEAMVANHRVEETEAVLTQMRDH 1088
                  55566699*****************988765 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0024
      TPR_19   24 naearllLAeallalgqldeAealLdalpeedpddarya 62  
                  +++++  L++   a++++d+A++  da+p  ++  + y 
  CCE28705.1 1093 SPYIANTLIRGWSAQNNVDKARQFFDAVPIYKREPSTYE 1131
                  67778888888899***************9998877665 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.013
      TPR_19   37 algqldeAealLdalpeedpddarya 62  
                  a++++d+A++  da+p  ++  + y 
  CCE28705.1 1106 AQNNVDKARQFFDAVPIYKREPSTYE 1131
                  46677777777777776666655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 7800.14
//
Query:       CCE28706.1  [L=204]
Description: uncharacterized protein CPUR_02394 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-05   23.1   0.0    0.00012   22.5   0.0    1.3  1  AFT       Transcription factor AFT
  ------ inclusion threshold ------
      0.052   14.3   0.1      0.082   13.6   0.1    1.3  1  FAR1      FAR1 DNA-binding domain


Domain annotation for each model (and alignments):
>> AFT  Transcription factor AFT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.3e-08   0.00012      62     109 ..      83     131 ..      35     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.3e-08
                 ..........XXXXXXXXXX----EEEEEEETTT.TEEEEEEEE---SS CS
         AFT  62 seeetsskkkkkkravsrynsCPfrvratyslkr.kkWsivvvnnehsh 109
                 ++ ++s+++  +++ +sr   CPfrvra+   +   kW   vvn +h+h
  CCE28706.1  83 GSRRASESRGIRRQGSSRLIGCPFRVRASCQRRLgDKWVYAVVNGHHNH 131
                 444555556667788999**********998886479***********9 PP

>> FAR1  FAR1 DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   9.1e-06     0.082       4      86 ..      46     131 ..      43     134 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.1e-06
        FAR1   4 keYakrvGFsvrvkk.srrsrkdge..iirrkfvCskeGfkkekkktkeakrerastrtgCkAmlvvkkek..egkwvvtklvkeHNH 86 
                 ++++ + G +  +++ s++ + dg+   +  ++ C + G+++ ++++   +r+ +s  +gC   ++   ++   +kwv   ++ +HNH
  CCE28706.1  46 QQWGLQNGMAFVKQAaSNYRKIDGQptATYVRLGCDR-GSRRASESR-GIRRQGSSRLIGCPFRVRASCQRrlGDKWVYAVVNGHHNH 131
                 5666666665444440444444443114445677887.666666655.46666677779****999987776689************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1453.75
//
Query:       CCE28707.1  [L=757]
Description: related to ATP dependent RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-44  151.6   0.1      3e-44  150.9   0.1    1.4  1  DEAD        DEAD/DEAH box helicase
    8.9e-20   71.1   0.0    3.5e-19   69.2   0.0    2.0  1  Helicase_C  Helicase conserved C-terminal domain
      9e-17   61.1   0.1    1.8e-16   60.1   0.1    1.5  1  DUF4217     Domain of unknown function (DUF4217)
      0.001   19.1   0.0     0.0024   17.9   0.0    1.6  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.1   6.7e-48     3e-44       1     176 []     166     364 ..     166     364 .. 0.92

  Alignments for each domain:
  == domain 1  score: 150.9 bits;  conditional E-value: 6.7e-48
                 -HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHS.........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.SEEEEEETTSSHH CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyet.........kgktgpkalivePtreLaeqtlnnlkkfkkyid.lrvlliiggvaar 88 
                 t+iQ+++ip++l +  dv+v+aeTGsGKT a+l+p+l++v++          ++++g   +iv+PtreLa+qt++ l++++ +   l   +i+gg++++
  CCE28707.1 166 TAIQQKVIPHLLaHSSDVFVQAETGSGKTFAYLLPMLHRVLKLsgnsdgrqiHRDSGIFGIIVSPTRELAKQTHTVLEQLIRPFPwLVSTAITGGESKK 264
                 79**********6667************************999*******9999****************************977466669******** PP

                 HHHHHHHTTCSEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTT...........SEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxx RF
        DEAD  89 dqlskldngvdivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklq...........rqvivlSATlpkdvkk 175
                  ++s++++gv+++++tpgrl+d++ +t+ l+l  vr+l+lDE drl+d gf++++++ + +l+qi   +  +           r ++++SAT++ +v+k
  CCE28707.1 265 AEKSRIRKGVNFLIATPGRLADHIdNTKALSLGTVRWLILDEGDRLMDLGFEEDLKKTIDTLKQIPVVKTTEnatsladlperRVTVLCSATMKMNVQK 363
                 ************************88999********************************999876655335899****98555*********99998 PP

                 H CS
                 x RF
        DEAD 176 l 176
                 l
  CCE28707.1 364 L 364
                 6 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   7.7e-23   3.5e-19      33     111 .]     474     555 ..     412     555 .. 0.76

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 7.7e-23
                 HHHHHHT.....TSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  33 klllekk.....gikvavlhgelpqnereeileqfnkgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                  ++         ++ + ++hg+l+q  r ++l++f + +s  +Li+tdv +rG+dip+v+lVi +d+ ++ ++ i+r+GRt+Rag
  CCE28707.1 474 AYV---TsaaspEVIIHRMHGSLSQPIRTATLRSFSACKSPsLLITTDVSSRGLDIPSVDLVIEYDPAFSFADHIHRVGRTARAG 555
                 333...03345689999*******************999999*****************************************97 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.1     4e-20   1.8e-16       2      59 ..     623     682 ..     622     683 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 4e-20
     DUF4217   2 qqkleslcakdrdlkelAqkAfvsyvraYsvhlake..iFrvkkLdlealAksfGLleaP 59 
                 q ++e+++++d +  elA+++f+s++raY++h   e   F++ +L+l+++AksfGL+++P
  CCE28707.1 623 QLHFEQRLLQDAKRLELARNGFKSHIRAYATHVRDEraHFDITQLHLGHVAKSFGLRDPP 682
                 7899*******************************************************9 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.4e-07    0.0024      22     150 ..     178     315 ..     150     337 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.4e-07
                 .TTSEEEEEESTTSTHHHHH.HHHHHHH-S................-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--.........-S CS
      ResIII  22 krdkrglikmaTGtGKTlva.aklierllkkgkee...........kflflvprkslleqtleefkkflseayke.igkkvsgdkkka..kekdstnkk 105
                  +   ++++++TG+GKT+ + + +  r+lk  +++             +++ p+++l +qt + +++++ +     +++ ++g + k+  k++ ++  +
  CCE28707.1 178 AHSSDVFVQAETGSGKTFAYlLPMLHRVLKLSGNSdgrqihrdsgiFGIIVSPTRELAKQTHTVLEQLIRPFP-WlVSTAITGGESKKaeKSRIRKGVN 275
                 55678999************555556666655555899*****996668899**********99999987643.355555555555554777789999* PP

                 EEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTT CS
      ResIII 106 ilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakksw 150
                 +l++t  +l  ++     +++ l+ ++   +i DE  rl +   +
  CCE28707.1 276 FLIATPGRLADHI----DNTKALSLGTVRWLILDEGDRLMD-LGF 315
                 *********9999....678888888888999999887777.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5206.55
//
Query:       CCE28708.1  [L=113]
Description: uncharacterized protein CPUR_02396 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.043   14.1   7.0      0.074   13.4   7.0    1.4  1  Senescence  Senescence-associated protein


Domain annotation for each model (and alignments):
>> Senescence  Senescence-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   7.0   4.1e-06     0.074      44     132 ..      17     101 ..       2     103 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.1e-06
  Senescence  44 sprtrkalrkvrkvsgqaakvsaktvggvgdaagrvgaavaksvkkkgtksseeeskpgksekktaagevlnasldafstvldgleeaa 132
                  ++t +a +kv  ++g + ++   ++ggv++ ag v++a+a +++++     ++ ++++ ++  ++ g++++++ ++++ v++g+e+a+
  CCE28708.1  17 PNQTSTAGQKVAGATGFVTTILGNAAGGVSRTAGTVAGAAATGLGDTV----NNVAGEAGKPVGNGLGSIGSGVSEGANSVAKGMEDAG 101
                 345666666666666666666666666666666666666666666555....4666777788899999999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 895.41
//
Query:       CCE28709.1  [L=131]
Description: uncharacterized protein CPUR_02397 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-30  105.6   7.5    2.3e-30  105.3   7.5    1.0  1  COPI_assoc  COPI associated protein
  ------ inclusion threshold ------
      0.056   13.8   8.5      0.097   13.0   8.5    1.4  1  Cg6151-P    Uncharacterized conserved protein CG6151-P
      0.063   13.7   1.6        2.2    8.8   0.0    2.6  3  DUF2583     Protein of unknown function (DUF2583)
        0.2   11.3   5.7        2.8    7.6   3.8    2.0  2  TMEM72      Transmembrane protein family 72
        3.1    8.0  10.2       0.37   10.9   4.7    2.3  3  Ycf66_N     Ycf66 protein N-terminus


Domain annotation for each model (and alignments):
>> COPI_assoc  COPI associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.3   7.5   6.3e-34   2.3e-30       3     122 ..       6     123 ..       4     126 .. 0.95

  Alignments for each domain:
  == domain 1  score: 105.3 bits;  conditional E-value: 6.3e-34
  COPI_assoc   3 afrilnlvvgglaillgisqliilfsnflsfilsiYiillgivlillEfrvpfeiykyfsfmfsylGRGlfyillgllvsyggvlsilialllflvGLv 101
                 +fri+nlvv+++++l+gi+ ++ l  +++s+il+ Y+i++g+ ++llEf++p+++ +y++f+fs++GRG+fy+l+g l+  + +ls +++ ++ ++G+ 
  CCE28709.1   6 IFRIVNLVVATVTVLGGIAGIFLL--QLQSIILGAYLIVFGLAIALLEFQIPPQVSRYANFLFSFIGRGIFYVLIGGLLFGKEILSNIAGAIVCIIGVG 102
                 89******************8665..**************************************************7777677**************** PP

  COPI_assoc 102 yillhlvpsieepenlkkena 122
                 y++l++vpsie+p+n+++ ++
  CCE28709.1 103 YVALEFVPSIEPPSNMRDADV 123
                 *****************8765 PP

>> Cg6151-P  Uncharacterized conserved protein CG6151-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   8.5   2.7e-05     0.097       5     100 ..      14      99 ..       9     109 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
    Cg6151-P   5 siilcialGianiftlsvvlivfsilalvsgfvvlfiEvPlllricptsskfdefiekfetnwmraalYlvmavvqwlslivqatslivaavllll 100
                  + + ++ Gia if l++  i+ +++ +v+g+ + ++E    ++i p +s+ ++f  +f   + r+++Y++++ + +     + +s i++a++ ++
  CCE28709.1  14 VATVTVLGGIAGIFLLQLQSIILGAYLIVFGLAIALLE----FQIPPQVSRYANFLFSF---IGRGIFYVLIGGLLFGK---EILSNIAGAIVCII 99 
                 456778889*****************************....59999999999999888...9********99988544...44777777766544 PP

>> DUF2583  Protein of unknown function (DUF2583)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.3       0.2   7.3e+02       5      14 ..      32      41 ..       5      47 .. 0.52
   2 ?    3.5   0.8     0.027        98       7      53 ..      34      70 ..      27      91 .. 0.45
   3 ?    8.8   0.0    0.0006       2.2      16      48 ..      92     124 ..      79     128 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.2
     DUF2583  5 kalllGnvlm 14
                ++++lG  l+
  CCE28709.1 32 QSIILGAYLI 41
                2333333333 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.027
     DUF2583  7 lllGnvlmglGlllmvaslaysvlnqlpelelpellaeaallgifiG 53
                ++lG  l+++Gl++ +  l +++  q+          +a++l  fiG
  CCE28709.1 34 IILGAYLIVFGLAIAL--LEFQIPPQV--------SRYANFLFSFIG 70
                4555555555554332..233333333........333333333443 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0006
     DUF2583  16 lGlllmvaslaysvlnqlpelelpellaeaall 48 
                  G ++ +++++y+ l+ +p++e p  + +a++ 
  CCE28709.1  92 AGAIVCIIGVGYVALEFVPSIEPPSNMRDADVS 124
                 6999*********************99999876 PP

>> TMEM72  Transmembrane protein family 72
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.8   0.00079       2.8      17      56 ..      13      52 ..       2      54 .. 0.77
   2 ?    3.9   0.0     0.011        39      93     133 ..      73     110 ..      62     124 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00079
      TMEM72 17 GiaTaivLigvGvelllkgefkslavylllsgvavsvlEi 56
                 +aT  vL g+    ll+ ++  l+ yl++ g+a+ +lE 
  CCE28709.1 13 VVATVTVLGGIAGIFLLQLQSIILGAYLIVFGLAIALLEF 52
                47788899998555666667899***************96 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.011
      TMEM72  93 llYvllsvacflhpvlvwhvtipGtmLvilgllylllskrk 133
                 ++Yvl+  ++f    + ++++i+G++  i g+ y++l + +
  CCE28709.1  73 IFYVLIGGLLF--G-KEILSNIAGAIVCIIGVGYVALEFVP 110
                 56666666533..3.346899**************998865 PP

>> Ycf66_N  Ycf66 protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2         1   3.7e+03       9       9 ..      20      20 ..       6      32 .. 0.45
   2 ?   10.9   4.7    0.0001      0.37       1      42 [.      34      78 ..      34     109 .. 0.82
   3 ?   -0.8   0.0      0.49   1.8e+03       6      22 ..      98     114 ..      90     124 .. 0.50

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1
     Ycf66_N  9 l 9 
                l
  CCE28709.1 20 L 20
                2 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0001
     Ycf66_N  1 yllgivlalaslaLYflrf.fkPelardeDiffsgvg..Llygli 42
                ++lg  l++++la+ +l+f + P+++r   ++fs++g  ++y li
  CCE28709.1 34 IILGAYLIVFGLAIALLEFqIPPQVSRYANFLFSFIGrgIFYVLI 78
                69***************984678*************644666554 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.49
     Ycf66_N   6 vlalaslaLYflrffkP 22 
                 +++++ +aL f+ +++P
  CCE28709.1  98 IIGVGYVALEFVPSIEP 114
                 34444455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 930.77
//
Query:       CCE28710.1  [L=831]
Description: related to elongation factor G [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.8e-52  176.3   0.0      8e-52  175.6   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    1.2e-19   70.2   0.0    2.4e-19   69.2   0.0    1.6  1  EFG_II       Elongation Factor G, domain II
    5.6e-14   51.9   0.0      4e-07   30.0   0.0    2.6  2  EFG_C        Elongation factor G C-terminus
    9.7e-06   25.9   0.1    4.4e-05   23.8   0.1    2.2  1  GTP_EFTU_D2  Elongation factor Tu domain 2


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.6   0.0   1.8e-55     8e-52       1     193 [.      50     348 ..      50     349 .. 0.94

  Alignments for each domain:
  == domain 1  score: 175.6 bits;  conditional E-value: 1.8e-55
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE..............TTCSSEEEEEEEESSSGGGHH CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle..............ketkkylinliDtPGHvdFsk 85 
                 k+irnigii+hvD+GKtT+t+r+l+++g ++++g ++++++v+D+l+ Er+rgiTi+saai++               +    +++nliDtPGH+dF  
  CCE28710.1  50 KNIRNIGIIAHVDAGKTTTTERMLFYSGVTRRAGDVDSGNTVTDFLELERARGITIQSAAITFTwprarvdqchqsgvSGVIPKTVNLIDTPGHQDFRF 148
                 69***********************************99**********************************99887688999*************** PP

                 HHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH............................... CS
    GTP_EFTU  86 evirglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk............................... 153
                 ev r + vlDgav v+d+v+Gve+ te+v+  a++ ++p+ivf+NK+Dr +a++k++v e+ ++l+                                 
  CCE28710.1 149 EVDRCMPVLDGAVCVMDSVKGVEAHTERVWASAQEFKIPRIVFCNKLDRQGASFKKSVLEIGTRLKGWplvcqipwwekdnfvgvidiidgvayrcksg 247
                 *****************************************************************555******************************* PP

                 ............................................................HHHHHHHHHTTT.TTEEEEEEBTTTTBTHHHHHHHHHHH CS
    GTP_EFTU 154 ............................................................eeklekygekge.kevpvvfgSalkgegvktllealvel 191
                                                                             +++++ + ++ge + +pv+ gS+l+  gv+ l++a++++
  CCE28710.1 248 pestrlgqddlkqhlsesdpqllaeiqvarqrliegladfdeaimdaflaeqpeipsamiKAAIRRAIANGEgHAIPVFAGSSLRHLGVELLMDAITDY 346
                 ********9999999999999999999999999999999998888888888888887777666666655555799************************ PP

                 SH CS
    GTP_EFTU 192 lp 193
                 lp
  CCE28710.1 347 LP 348
                 98 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   5.4e-23   2.4e-19       1      74 [.     487     560 ..     487     561 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 5.4e-23
      EFG_II   1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelg 74 
                 +P+Pv +l +ep  +  +++l++aL++ ++EDp+lr++rd  T ++ ++GmG+lHl++ + +l++++ +++++g
  CCE28710.1 487 IPPPVAFLQVEPYGNVAAQELQTALENASREDPSLRWSRDAKTDQFTIQGMGKLHLDVSLYNLRQKHSIDADFG 560
                 7********************************************************************99875 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.2e-07   0.00098       1      38 [.     709     747 ..     709     758 .. 0.90
   2 !   30.0   0.0     9e-11     4e-07      40      85 ..     782     827 ..     772     830 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.2e-07
                 EEEEEEEEEEEEEECCCCCCHHHHHHH.CT-EEEEEEEE CS
       EFG_C   1 vllEPivkveievpeeyvgkvisdlss.rrGeiedmeqd 38 
                 vllEPi+  +i++pe   g+v  d+++   G++++++ +
  CCE28710.1 709 VLLEPIMLTHITCPEATAGTVQHDITAgAGGQVLEVKDR 747
                 59*************************9999**999987 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 9e-11
                 TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHH CS
       EFG_C  40 sgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdk 85 
                 + +v i a++P +e++++ + Lrs T+G+ s++m f+++++v g+ 
  CCE28710.1 782 DRMVEIVAKVPYKEMLDYDDHLRSKTAGRHSMTMAFDSFAQVMGHR 827
                 56899************************************98875 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   9.7e-09   4.4e-05       1      73 [.     398     464 ..     398     465 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 9.7e-09
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  G+++++rvy Gtl ++    +     + +   +r  +l+   + ++++++   +G+i ai gl++a + Gdtl
   CCE28710.1 398 GVISFVRVYHGTLTRNSSSFNTN--MQAQ---ERSMGLLQISASKTQEIETLSVGQIGAIRGLKKA-RSGDTL 464
                  899******************55..4344...67777777779999*******************8.*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5653.20
//
Query:       CCE28711.1  [L=477]
Description: related to Uth1p, Nca3p, YIL123w and Sun4p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-74  250.4   8.4    2.6e-74  249.8   8.4    1.2  1  SUN             Beta-glucosidase (SUN family)


Domain annotation for each model (and alignments):
>> SUN  Beta-glucosidase (SUN family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.8   8.4   1.4e-78   2.6e-74       4     245 .]      56     302 ..      54     302 .. 0.95

  Alignments for each domain:
  == domain 1  score: 249.8 bits;  conditional E-value: 1.4e-78
         SUN   4 ikCsefps.deglvavdalgl.gGwagiqdvkgesqeCkegsyCsyaCppGylktqw.psa.qgatgssvGGLyCnkdGklektnkdskklCekgagkv 98 
                  +C+ fp+ d +lv+v+++++ +Gwa+++d     qeCk+g yC++aC+pG++++qw p++ + ++ s++GGLyC+++G ++k++++ k+ C+ g+g+v
  CCE28711.1  56 GNCA-FPTdDPDLVPVTPESKnAGWAMSPD-----QECKPGGYCPFACKPGMVMAQWdPHSsYVYPVSMNGGLYCDNSGIMKKPFPS-KPNCVLGTGAV 147
                 5899.**6378*******9998********.....89********************98878*************************.*********** PP

         SUN  99 kvknklsksvavCrTdyPGtEamlipteveagssaelavpdedtyykwkgkktsaqYYvNkaGvsvedaCvWgseskpvGNwaplvlGagkdedgktyl 197
                 k++nk+++++++C+T++PG+Eamlipt+v+  s+ ++avpd ++   w   +t+a++YvN++G+  e++CvWg++skp GNw+p+v Ga++d +g+t++
  CCE28711.1 148 KAVNKCQSNLSWCQTVLPGNEAMLIPTVVS--SEITVAVPDISY---WG--STAAHFYVNPPGIG-EEGCVWGTSSKPHGNWSPYVTGANTDISGNTFV 238
                 *****************************9..99**********...*9..*************9.99******************************* PP

         SUN 198 sifqNp......tskeklnfnvkieaeegdsvsgkCkye.........sgklskg.ggadgCtv 245
                 +i++Np      +s+++++f ++ie+ +g++v+++C+++         s++++ g gg ++C+v
  CCE28711.1 239 KIGWNPvwlsssLSSSRPSFAMRIECPNGGCVGLPCEIDtsgpvgqviSNQAAVGaGGGSFCVV 302
                 **********9999*****************************99999666666658899**97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1062  (0.0592336); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 3492.24
//
Query:       CCE28712.1  [L=536]
Description: uncharacterized protein CPUR_02400 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0015   19.0   0.0        3.4    8.2   0.0    3.0  3  PCI       PCI domain
  ------ inclusion threshold ------
        0.1   12.8   0.2       0.33   11.2   0.2    1.9  1  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   1.2e+04       4      22 ..      87     105 ..      74     120 .. 0.48
   2 !    8.2   0.0   0.00038       3.4       3      57 ..     313     370 ..     311     428 .. 0.71
   3 !    7.3   0.0   0.00073       6.6      73      97 ..     461     485 ..     450     490 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHTSHHHHHHHH CS
         PCI   4 sdllkalrsgnlsgfseel 22 
                   l +++++ +l g+ e+l
  CCE28712.1  87 LILWRDVDYEDLLGAHELL 105
                 2233333333333333333 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00038
                 HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH...C CS
         PCI   3 ysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvsk...i 57 
                 +  l  a+r gn+ +f+  l  +e  l+++  l +l  +L+  +++ l r++++    
  CCE28712.1 313 FFPLCMAVRAGNFVQFQAHLSTHETWLFEKGLLLTLTHRLRPLLWRSLARRTFLltyV 370
                 678899*****************66677777777799999999999998888886441 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.00073
                 SHHHHHHHHHHHHHTTSSSEEEETT CS
         PCI  73 svdevEkilvklIrdgeirakidqe 97 
                 + ++vE ++++lI++g++++ i + 
  CCE28712.1 461 TLKDVEMMVATLIEQGFMHGFIAHG 485
                 5589****************99885 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   3.7e-05      0.33       3      32 ..     242     271 ..     240     272 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.7e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 +ly+lG+  + +++y +A+ ++e+A    P
  CCE28712.1 242 YLYYLGRFNFSNQHYHRAALCLEQAYLQTP 271
                 89***********************87766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 4507.11
//
Query:       CCE28713.1  [L=417]
Description: probable acetoacetyl-CoA thiolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-85  285.7   3.8    5.2e-85  284.9   3.8    1.3  1  Thiolase_N     Thiolase, N-terminal domain
    4.2e-39  133.0   1.0    4.2e-39  133.0   1.0    2.1  2  Thiolase_C     Thiolase, C-terminal domain
    3.7e-05   23.4   0.9    9.3e-05   22.1   0.9    1.7  1  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
       0.96    9.3   6.9        2.8    7.9   0.3    3.1  3  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.9   3.8   1.2e-88   5.2e-85       5     258 ..      29     282 ..      28     284 .. 0.97

  Alignments for each domain:
  == domain 1  score: 284.9 bits;  conditional E-value: 1.2e-88
                 EEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTS CS
  Thiolase_N   5 saartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaage 103
                 sa+rtp gkf+gs+ ++sa +L+a a+++++ek +v+ +++++v++Gnv+q+  gq++arqa++ ag+pe+v a+t+nkvc+Sglkava aaq+i++g 
  CCE28713.1  29 SASRTPTGKFNGSFLSVSAPKLGAVAIRSAVEKSKVSIDKITDVYMGNVMQGSVGQAPARQATIFAGLPETVEATTINKVCASGLKAVAIAAQNIQMGL 127
                 69************************************************************************************************* PP

                 HSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTBE-EEE CS
  Thiolase_N 104 advvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdeivPvkv 202
                 a++ vagG+Esms++p +++ ++     +g+ +++d li+dgl+d++++ hmG +aen+ kk++i+Re+qd +A++s++ka++a+++++F+deivPv+v
  CCE28713.1 128 AEAQVAGGMESMSRVPLYVP-RASGLPAFGHVTMEDGLIKDGLTDVYQQFHMGNCAENTVKKHNITREQQDTYAIESYKKAQKAWADKAFADEIVPVTV 225
                 *******************9.55677789********************************************************************** PP

                 EESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTT..SS-BTTSB--BEEEEEEEEEEE CS
  Thiolase_N 203 kgkkgkktvdkdeairsevtaekLaklkpaFkke..GtvtAgnasqisDGaaavllms 258
                  g+kg+ ++d+de+    v+++k+ +lkpaF  +  GtvtA+n+s+++DGa+a++l +
  CCE28713.1 226 AGRKGDIVIDTDEGYMD-VKFDKVPTLKPAFVRDgtGTVTAANSSTLNDGASALVLGN 282
                 **************988.*************999889******************965 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.4      0.23     1e+03      82     120 ..      82     119 ..      51     136 .. 0.70
   2 !  133.0   1.0   9.5e-43   4.2e-39       2     123 .]     294     413 ..     293     413 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.23
                 TTTHHHHHHHHHHHHHHHCTTSEEEEEEEETTTEEEEEE CS
  Thiolase_C  82 lGasGaRivvtllselkkeggklgvaalCigggqgvalv 120
                 +G + aR++ t+   l +  + +++  +C++g ++va+ 
  CCE28713.1  82 VGQAPARQA-TIFAGLPETVEATTINKVCASGLKAVAIA 119
                 566666664.56666777777778888888888777765 PP

  == domain 2  score: 133.0 bits;  conditional E-value: 9.5e-43
                 --SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHC CS
  Thiolase_C   2 kplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkke 100
                 ++la+i sya +++ p ++ ++Pa a++ +l++ag+t +++ ++E+nEAFaa++La++k l+l+  kvN  GGai+lGH lG sG+Ri++tll++lk  
  CCE28713.1 294 RVLARICSYADAAMAPIDFPVAPAKAVPIALQRAGITKDQVAIWEFNEAFAAVILANQKILGLEGAKVNPLGGAISLGHALGSSGSRILTTLLHQLKP- 391
                 579*********************************************************************************************99. PP

                 TTSEEEEEEEETTTEEEEEEEEE CS
  Thiolase_C 101 ggklgvaalCigggqgvalviek 123
                  g++gvaa+C+ggg ++a+v+++
  CCE28713.1 392 -GEYGVAAICNGGGAATAMVVQR 413
                 .9******************985 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.9   2.1e-08   9.3e-05     140     206 ..      63     140 ..      17     150 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.1e-08
                    GSCT.THHHHHSTTHHHHHHHHH.....HT--SSEEEEES.....GGGHHHHHHHHHHHHHHTTS-SEEEEEEEE--- CS
  ketoacyl-synt 140 kasp.kavgavlanviagrisya.....lglrGpsvtvdt.....ACsSslvavhaavqslrsgeadvalaGGvelll 206
                    k+s  k+++ ++ nv+ g + +a       + G   tv++      C+S+l+av+ a q+++ g a++ +aGG+e + 
     CCE28713.1  63 KVSIdKITDVYMGNVMQGSVGQAparqaTIFAGLPETVEAttinkVCASGLKAVAIAAQNIQMGLAEAQVAGGMESMS 140
                    4444445555555555555555544444455555555555333337****************************9875 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3   0.00061       2.8       3      39 ..     105     141 ..     103     146 .. 0.89
   2 ?    3.9   0.1     0.011        48      50      65 ..     269     286 ..     260     298 .. 0.76
   3 ?   -1.6   0.3      0.56   2.5e+03      53      63 ..     403     413 ..     395     416 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00061
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlsk 39 
                  +n++C++ + a+++A++ i+ g a+  +  g e +s+
   CCE28713.1 105 INKVCASGLKAVAIAAQNIQMGLAEAQVAGGMESMSR 141
                  799*******************999888888888887 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.011
                  TTB-EEEEEEEEEEE..S CS
  ACP_syn_III  50 vlfGDGAgAvvleas..e 65 
                   ++ DGA A+vl+++   
   CCE28713.1 269 STLNDGASALVLGNKalA 286
                  5788********998542 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.56
                  -EEEEEEEEEE CS
  ACP_syn_III  53 GDGAgAvvlea 63 
                  G +A+A+v+++
   CCE28713.1 403 GGAATAMVVQR 413
                  55778888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3217.00
//
Query:       CCE28714.1  [L=156]
Description: ubiquitin-conjugating enzyme E2-17 kDa; ubiquitin-protein ligase 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-49  166.9   0.1    2.3e-49  166.6   0.1    1.1  1  UQ_con     Ubiquitin-conjugating enzyme
     0.0035   17.0   0.0      0.004   16.9   0.0    1.1  1  Prok-E2_B  Prokaryotic E2 family B
  ------ inclusion threshold ------
      0.019   15.2   0.0      0.026   14.8   0.0    1.3  1  RWD        RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.6   0.1   3.9e-53   2.3e-49       1     139 [.       8     149 ..       8     150 .. 0.94

  Alignments for each domain:
  == domain 1  score: 166.6 bits;  conditional E-value: 3.9e-53
                 HHHHHHHHHHHSTTTTEEEEEEET....TEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTS CS
      UQ_con   1 rlqkelkelakkkpsgisaklvdd....enlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspal 95 
                 rl++++k++++++p g+sa++v d      + +w+++i+gp++tp+e+g+F+l ++f+e+YP+kpP+vkf++++fHPnv+++Ge+cldiL+ ++Wsp++
  CCE28714.1   8 RLMRDFKRMQTDPPAGVSASPVPDnvmtWLVLSWNAVIIGPAETPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYATGELCLDILQ-NRWSPTY 105
                 899********************744434456899********************************************************.55***** PP

                 HHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con  96 tlesvllsiqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                 ++  +l+s+qsLl++pn+ sp+n+ea +l+k++r+ey k+v+e+
  CCE28714.1 106 DVAAILTSVQSLLNDPNTGSPANVEASNLYKENRREYAKRVRET 149
                 *****************************************986 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.6e-07     0.004      34     113 ..      54     127 ..      11     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.6e-07
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLn.egisgde 113
                 + gt++l + +++++p  pp+v           p ++  +g+LCl       + w p   va++l+++q +Ln  +  +  
  CCE28714.1  54 EDGTFRLVMQFEEQYPNKPPQVKFISQM---FHPNVYA-TGELCL---DILQNRWSPTYDVAAILTSVQSLLNdPNTGSPA 127
                 67999999**************998777...7899999.******...8999*********************54444433 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   4.4e-06     0.026      54      97 ..      57     119 ..      47     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.4e-06
                 EEEEEEEE-SSTTSS--EEEEEECC...................SS-HHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxx RF
         RWD  54 slkleiklpeeYPeeaPiislsste...................nlpkeqvksleekleelae 97 
                 +++l +++ e+YP+++P++++ s+                    + p ++v+ + + +++l++
  CCE28714.1  57 TFRLVMQFEEQYPNKPPQVKFISQMfhpnvyatgelcldilqnrWSPTYDVAAILTSVQSLLN 119
                 68899****************999988888888888777777776666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1255.49
//
Query:       CCE28715.1  [L=918]
Description: related to kinesin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.8e-114  380.3   0.2   6.8e-114  380.3   0.2    2.0  3  Kinesin      Kinesin motor domain
    7.2e-27   94.2   0.0    3.5e-26   91.9   0.0    2.3  1  Microtub_bd  Microtubule binding


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.3   0.2  7.6e-118  6.8e-114       1     333 []      11     328 ..      11     328 .. 0.95
   2 ?   -3.0   0.3       0.3   2.7e+03     137     195 ..     648     680 ..     611     711 .. 0.55
   3 ?   -4.3   0.4      0.72   6.5e+03     245     277 ..     771     802 ..     757     813 .. 0.66

  Alignments for each domain:
  == domain 1  score: 380.3 bits;  conditional E-value: 7.6e-118
                 EE-SSSHHHHTTTTEBCEEEECTCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC...T CS
     Kinesin   1 RvRplnekekeeeeeeeveveeekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk...e 96 
                 R+Rp n+ e e+  + +v+ +      +++s + +++e++ +f+Fd+vfd e++q+++++  ++p v+++l+Gyn+t+faYGqtg+GK+yTm+g+   +
  CCE28715.1  11 RFRPQNRIELESGGKPIVSFS------SEDSCSLDSKEAQGSFTFDRVFDMECKQQDIFDFSIRPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTnidD 103
                 788888888888888888765......6777788889999*******************************************************9999 PP

                 TTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTST CS
     Kinesin  97 eeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkva 195
                 +e +G+ipr++e++F si+++ ++   e++v+vsy+EiY+e+i+DLL+++    + +l ++e++++g vyvkgl e+ v+s++ev+e++++g + r+va
  CCE28715.1 104 DEGRGVIPRIVEQIFASIMTSPST--IEYTVRVSYMEIYMERIRDLLAPQ----NDNLPVHEEKHRG-VYVKGLLEIYVSSVQEVYEVMRRGGNARAVA 195
                 999***************998876..**********************99....456********98.******************************* PP

                 TSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHT CS
     Kinesin 196 etklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrlL 294
                 +t++n+eSSRSH++f it++qkn+++++    k+++l LvDLAGsE++ ktga +g++l+Ea++iNkSL+aLg vi+aL++  ks+h+pYRdSkLTr+L
  CCE28715.1 196 ATNMNQESSRSHSIFVITVTQKNVETGSA---KSGQLFLVDLAGSEKVGKTGA-SGQTLEEAKKINKSLSALGMVINALTDG-KSSHVPYRDSKLTRIL 289
                 ***********************998776...89******************5.7999************************.**************** PP

                 GGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 295 qdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 q+sLgGns+t++i+++spss n +etlst++f+ rak+i
  CCE28715.1 290 QESLGGNSRTTLIINCSPSSYNDAETLSTMRFGMRAKSI 328
                 *************************************97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.3
                 TEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTST CS
     Kinesin 137 eeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkva 195
                 ++  DLL+++                        +    ++aee+ +lle++ ++r+  
  CCE28715.1 648 QQYEDLLTKNL-----------------------SD---SDAEEIKTLLENAYASRQST 680
                 33344443333.......................11...23333444444444443333 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 0.72
                 HHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
     Kinesin 245 ktgaaegerlkEaaniNkSLlaLgrvisaLaek 277
                 ++++ ++ ++k  a   + L  L +v ++L+e+
  CCE28715.1 771 RSSN-NRAQQKKMAFLERNLEQLTQVQRQLVEQ 802
                 3443.3444666777777777777777777766 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   3.9e-30   3.5e-26      21     149 .]       5     148 ..       3     148 .. 0.89

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 3.9e-30
                  B-EEEEEEECCCS-T......EEEETTT.........TTTEEEE-SEEEECTTHCCCCCC.CCHHHHHHHHTT--EEEEEEES............... CS
  Microtub_bd  21 niRvfarvrpelesek.....akikfpe......eekkkkkefsFdrvfeseseqeevfe.eisqlvqsaldgynvcifaygqTGsGKtyTmeg.... 102
                  +i v ar rp+++ e        ++f++      + k+ + +f+Fdrvf+ e++q+++f+  i+  v+  l+gyn ++faygqTG+GK+yTm+g    
   CCE28715.1   5 SIKVVARFRPQNRIELesggkPIVSFSSedscslDSKEAQGSFTFDRVFDMECKQQDIFDfSIRPTVDDILNGYNGTVFAYGQTGAGKSYTMMGtnid 102
                  58999999998888656677744445434578887889999******************8689*******************************9887 PP

                  .....ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 103 eeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                  ++e +g+ipr+ve+if  i +    +++y+++++++eiy e+++DlL
   CCE28715.1 103 DDEGRGVIPRIVEQIFASIMTS-PSTIEYTVRVSYMEIYMERIRDLL 148
                  78999*************9999.78*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2285  (0.127447); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.31u 0.32s 00:00:01.63 Elapsed: 00:00:00.52
# Mc/sec: 5320.80
//
Query:       CCE28716.1  [L=359]
Description: uncharacterized protein CPUR_02404 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2689.29
//
Query:       CCE28717.1  [L=357]
Description: related to leucine carboxyl methyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-22   80.2   0.0    4.7e-22   78.8   0.0    1.6  1  LCM       Leucine carboxyl methyltransferase


Domain annotation for each model (and alignments):
>> LCM  Leucine carboxyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   2.6e-26   4.7e-22      55     187 ..      71     228 ..      36     229 .. 0.84

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 2.6e-26
                 CT--HHHHHHHHHHHHHHHHHHHHHHHCTT..ESEEEEET-TT--HHHHHHHTT...TEEEEEEE-HHHHHHHHHHHHHSHHHHH.............. CS
         LCM  55 ekkapelnrgiavRtrffddllkaalsaag..irqvViLGAGlDtrayRlpwla...glkvfEvDqpevlefKretlkelgaepk.............. 134
                  ++ p +nrg++vRt   d++++a+ls++g  ++q++ LGAG Dtr++ + +     ++ + E+D++ ++++Kr++++ +++++               
  CCE28717.1  71 TRRLPIINRGTYVRTTSLDAMIHAFLSQNGssAKQIISLGAGTDTRPLHMFQRPgaeNIIYHELDFEPTCQRKRAIIQSSPGLRHlfrdlsihdngsws 169
                 45799*********************779999**************76554444455****************************************** PP

                 ......EECSEEE--TTS.HHHHHHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS
         LCM 135 ......aelryvpvDlrd.ddwpeaLaaagfdpekptawvaeGvlvYLtpeasdalleai 187
                        + +  +vDlrd  + + +L ++  +++ pt++++e++l+YLtp+ s+ +l+++
  CCE28717.1 170 aepsrgGSYHCHAVDLRDlAKSTGNLPSH-VRSDLPTLLLSECCLCYLTPQDSEDVLRFF 228
                 99987667778*******99999999988.899***********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2540.03
//
Query:       CCE28718.1  [L=319]
Description: related to transcription factor spt3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-30  103.7   1.2    1.7e-29  101.7   0.2    2.3  3  TFIID-18kDa  Transcription initiation factor IID, 18kD subuni


Domain annotation for each model (and alignments):
>> TFIID-18kDa  Transcription initiation factor IID, 18kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.2   9.2e-34   1.7e-29       2      93 .]      11     101 ..      10     101 .. 0.98
   2 ?   -1.9   0.0      0.19   3.4e+03      68      84 ..     176     192 ..     158     196 .. 0.72
   3 ?   -1.0   0.0       0.1   1.9e+03      17      51 ..     215     249 ..     210     256 .. 0.75

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 9.2e-34
                  --CCCCHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC-XXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIID-18kDa   2 lfrkelqsmlyalGdvkePlqetvqlledlvrgyliellqqaakvaklrgsrkitlEDllfliRkDkkKlnRlkellslkellkkakKqfde 93 
                  ++r+e+++m+y++G+  eP  et++++ed+vr+++iell + +++a +rgs++i   Dl+f iR+D++K++Rl+++ls+k+++ k++K+ d+
   CCE28718.1  11 KYRQEISQMMYVSGETGEPSVETTSIIEDIVRQQVIELLRNCTELASRRGSKSISTTDLIFQIRHDQAKVSRLRTFLSWKDVR-KNVKDSDD 101
                  79*********************************************************************************.99999875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.19
                  XXXXXXXXXXXXXXXXX CS
  TFIID-18kDa  68 kkKlnRlkellslkell 84 
                  + K    +e+++++e++
   CCE28718.1 176 RTKAMTKEEYVTWSEYR 192
                  45666678899999887 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.1
                  -SS--HHHHHHHHHHHHHHHHHHHHHHHC-XXXX. CS
  TFIID-18kDa  17 vkePlqetvqlledlvrgyliellqqaakvaklrg 51 
                  + +P ++ v++l  l  + +  l++ a k  ++++
   CCE28718.1 215 DSKPSDDIVDILGFLTFEMVATLTEIALKAKEQED 249
                  67889999999999999988888888887766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2332.70
//
Query:       CCE28719.1  [L=1185]
Description: related to Lactobacillus putative histidine protein kinase SppK [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-08   34.8  17.1    1.5e-08   34.8  17.1    3.4  4  FUSC_2    Fusaric acid resistance protein-like
    2.2e-07   30.3   8.6    6.8e-05   22.1   0.1    2.8  2  ArAE_2_N  Putative ER transporter, 6TM, N-terminal
     0.0019   18.1   0.1     0.0046   16.8   0.0    1.7  2  ArAE_2    Aromatic acid exporter family member 2
  ------ inclusion threshold ------
       0.36   11.0  15.6        6.7    6.8  10.9    2.8  2  ArAE_1    Aromatic acid exporter family member 1
        5.3    6.2   7.7       0.26   10.4   0.4    2.4  3  Zip       ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   5.8      0.16   5.6e+02      61     126 ..      24      86 ..       4      91 .. 0.67
   2 ?   -5.0  14.6         5   1.8e+04      28     127 .]      66     174 ..      38     174 .. 0.61
   3 ?   -0.4   5.7      0.33   1.2e+03      21      79 ..     116     174 ..     108     207 .. 0.77
   4 !   34.8  17.1   4.3e-12   1.5e-08      12     127 .]     681     800 ..     658     800 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.16
      FUSC_2  61 lalal.lvfllvfliafflkrnyalafifltllalllyslaagsgnpieialhRlldvliGiliall 126
                 ++ +l  ++ ++   ++ + +++ + + flt++++ ++     +g+ ++i+ + ll +++G +++l 
  CCE28719.1  24 WQRILkYCIAATAAVIIAILPRFKFYASFLTPMVVTFAH----PGQRMGIMVESLLMIVFGFFLGLS 86 
                 665542222223333344457899**********99998....688888999999999999888875 PP

  == domain 2  score: -5.0 bits;  conditional E-value: 5
      FUSC_2  28 tlgasltravqRilGtvlGavlalllly...llpgnlala......llvfllvfliafflkrnyal..afifltllalllyslaagsgnpieialhRll 115
                  +g  +  +++ ++G +lG+ ++ll  y   l+++  ++a      ++++ +v+l  +++++++ l   ++fl + all+++   ++ +  ++ l+ ++
  CCE28719.1  66 RMGIMVESLLMIVFGFFLGLSWSLLGMYlssLVEEASPTAaytiraFFLLGCVVLHGYVRSSSPRLfnLVLFLLFGALLTIQT--PNVARTSLYLTLFV 162
                 66667778889999999999999997773334444433331122223344444455778877774412444455666666654..67777779999999 PP

      FUSC_2 116 dvliGiliallv 127
                  vl+G+ ++++v
  CCE28719.1 163 PVLMGGGVIVVV 174
                 999999998875 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.33
      FUSC_2  21 aaivlsptlgasltravqRilGtvlGavlallllyllpgnlalallvfllvfliafflk 79 
                  ++vl++++++s  r+++ +l  ++Ga+l +    ++ ++l l l+v +l+  + +++ 
  CCE28719.1 116 GCVVLHGYVRSSSPRLFNLVLFLLFGALLTIQTPNVARTSLYLTLFVPVLMGGGVIVVV 174
                 58999**************************9999999999999999999777755543 PP

  == domain 4  score: 34.8 bits;  conditional E-value: 4.3e-12
      FUSC_2  12 wrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgn.lalallvfll....vfliafflkrnyalafifltllalllyslaagsgn 105
                  +g Wa++  ++v + ++g sl+ ++ R++G+  G+++++l++ ++ g  +a++++++++    +++  ++ k++  + ++++++++++l+++ ++ ++
  CCE28719.1 681 VKGVWAPMQLIFVFEISIGTSLFGFFVRLFGVGYGCLVGYLSVEIGRGYrVAAVMIILVIgiipSVYVQLTTKQGRLGVIAIISASVVALAAI-NSVDS 778
                 4899********************************************854444443333322344445555666677777788888888888.56788 PP

      FUSC_2 106 pieialhRlldvliGiliallv 127
                  +ei+  Rl++ l+G+++a++v
  CCE28719.1 779 ASEIFYKRLVAFLVGGVVAIAV 800
                 889****************986 PP

>> ArAE_2_N  Putative ER transporter, 6TM, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   4.8   0.00012      0.45      19     101 ..      27     105 ..      22     110 .. 0.82
   2 !   22.1   0.1   1.9e-08   6.8e-05     142     322 ..     108     348 ..     100     378 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00012
    ArAE_2_N  19 ifRswvavwvaiiLmvipptarwlGtaayLllivsvivpsGggsvivfilialllllgiclawawaviamkianrarpdaitq 101
                 i++  +a + a+i+ + p++      a +L+++v  + ++ g+++ +++   l++++g +l++ w+++ m+++  + + + t+
  CCE28719.1  27 ILKYCIAATAAVIIAILPRFKF---YASFLTPMVVTFAHP-GQRMGIMVESLLMIVFGFFLGLSWSLLGMYLSSLVEEASPTA 105
                 5666666666777666666654...589************.999***************************998777666665 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 1.9e-08
    ArAE_2_N 142 vvyavllcvflffvgrlrakspkfalgaifgiIaadvfltyapmlPlfapgtlglallkPmgiglalkvvvsllifPttssfqvlktmlkllkllkkal 240
                  + a++l+ +++++g++r+ sp +    +f ++ a     ++  +P  a+ +l l+l  P+++g ++ vvv+l ifP+ ss+++ ++++  l+++  +l
  CCE28719.1 108 TIRAFFLLGCVVLHGYVRSSSPRLFNLVLFLLFGA----LLTIQTPNVARTSLYLTLFVPVLMGGGVIVVVNLAIFPELSSTYLGTSTICTLSATMDTL 202
                 4778999999************9666677888888....4556689999************************************************** PP

    ArAE_2_N 241 kfnsnflatlepsnese...............................................................wlnfkklekditkirslyp 276
                    +  + t   + e                                                                 ++ + +l   ++k+r +++
  CCE28719.1 203 SRATHWFITPGGDPEGHltqvgslsnplrltasrksvrgvsgireklkrrvrrffkgltnpfratgpspalsnfrntpihLSTLVQLAGQKSKLRTQLS 301
                 999999999988887778899999999999999999999999999999999999999999999999999999999999987788999999999999999 PP

    ArAE_2_N 277 kleaelaflplEfsigrfsaedvkelrs.tlrrlissiagLvyfydl 322
                  ++ +  ++  E+s++ ++++ + e+   ++  l+  i++L+  +++
  CCE28719.1 302 SCKKAQDEVDFEVSVSPLAPATMSEISVhHMTALVQNIVTLIGACEN 348
                 99999999999999999999999998752577778888888776665 PP

>> ArAE_2  Aromatic acid exporter family member 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.8     1e+04      48      78 ..     287     317 ..     274     345 .. 0.64
   2 !   16.8   0.0   1.3e-06    0.0046      47     158 ..     849     961 ..     806    1049 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.8
      ArAE_2  48 dqirkkilevleklaglkgllvllkfElslk 78 
                  q++++  +++ +l + k+    + fE+s++
  CCE28719.1 287 VQLAGQKSKLRTQLSSCKKAQDEVDFEVSVS 317
                 4566666778888888888888888888843 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.3e-06
      ArAE_2  47 rdqirkkilevleklaglkgllvllkfElslkGrwp..skkyarlqalvselvqllarLlvvlkrlepeewlkrllrrvglldpeliadvlavlsmasq 143
                  d + +   ++++ l  ++++l     E+ lkG +   + +y++++ +++++ ++   +  + +       l+ l  +v     ++ a + ++l  +++
  CCE28719.1 849 FDRFIHCRDKAQAALGAAQTILPFCLTEPRLKGSFRplAPTYKQIIYTLQQIADQMDNMIQLRRAY-GSSVLEDLNPQVHTFRRNVAASITLILFSVNE 946
                 455555555666677778888888889********745679********************99999.89****************************** PP

      ArAE_2 144 aLktGdpLPeilpap 158
                 aL t  pLP++lp+ 
  CCE28719.1 947 ALTTWLPLPQFLPSA 961
                 *************75 PP

>> ArAE_1  Aromatic acid exporter family member 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0048        17       5      30 ..      25      50 ..      22     102 .. 0.85
   2 ?    6.8  10.9    0.0019       6.7      30     138 ..     684     801 ..     653     804 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0048
      ArAE_1  5 aRtlKtaiavalailiaellgleyav 30
                +R+lK  ia++ a++ia l  ++ ++
  CCE28719.1 25 QRILKYCIAATAAVIIAILPRFKFYA 50
                79**************9988777554 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0019
      ArAE_1  30 vsAgIiailsiqptkkrslrtalerllasvlaliiavvffel.lGykpiviglvlllfip..ltvklkleeg......ivvssVlvlhllesksislal 119
                 v A +  i+  + ++ +sl  ++ rl+++  +++++++ +e+  Gy+  +++++l++ i+  + v+l  ++g      i+ +sV++l+ ++s ++   +
  CCE28719.1 684 VWAPMQLIFVFEISIGTSLFGFFVRLFGVGYGCLVGYLSVEIgRGYRVAAVMIILVIGIIpsVYVQLTTKQGrlgviaIISASVVALAAINSVDSASEI 782
                 4567778999999*************************99974699999999999987762244556666656666558899***************** PP

      ArAE_1 120 llnelllilvGigvallvN 138
                 + ++l+ +lvG +va+ v 
  CCE28719.1 783 FYKRLVAFLVGGVVAIAVE 801
                 ***************9886 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       1.3   4.7e+03     313     328 ..      68      83 ..      49     115 .. 0.63
   2 ?   10.4   0.4   7.4e-05      0.26      50     172 ..     503     646 ..     501     743 .. 0.78
   3 ?   -1.2   0.2      0.26   9.2e+02       5      53 ..     731     800 ..     725     813 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.3
         Zip 313 kqsllqllglllGfal 328
                 + ++ +ll++++Gf l
  CCE28719.1  68 GIMVESLLMIVFGFFL 83 
                 5555555555555543 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 7.4e-05
         Zip  50 gtaflhLlPealealeesqleee.hth......plagllvllGfl.llllveklltmivekksshkektpkkasssssesaakksvsndkveeseeked 140
                 ++  l++l +a++ +e++q  ++  ++       ++  l+ +G   +++l e+ l+ ++++  +++++tp ++++ ++ + a++  ++ +  +++ek +
  CCE28719.1 503 ADQVLQMLRHARKLVEKRQRRHNrCRIwvpqlrDFRKWLATGGETdATMLPEQHLRVVSSR--DQQNDTPLHENDGDASPMAARDEESAPNRDQREKIS 599
                 6667888888888888888777654448888888888888888654788889999999999..9999999999999999999999999999******** PP

         Zip 141 hvaeadtdadskeelrngkqeksesekeqas...............e 172
                 +++  + +++ +e+ ++++ +  + +k qas                
  CCE28719.1 600 NDSARRRRKERGEKRAKDHRHRRHRSKDQASitnrmraaaadtikwV 646
                 *9999999999999999999999999999885555444444444440 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.26
         Zip   5 ilaiiaililsllgllgpllvpkiskl.....................lsklllslllafavGvllgtaf 53 
                 + a+++il++++++ + + l  k+ +l                     +s+ +++ l+af vG  ++ a 
  CCE28719.1 731 VAAVMIILVIGIIPSVYVQLTTKQGRLgviaiisasvvalaainsvdsASEIFYKRLVAFLVGGVVAIAV 800
                 5555555555555555555555555557777766666666666666667777777777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1318  (0.0735122); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.48
# Mc/sec: 7439.49
//
Query:       CCE28720.1  [L=239]
Description: probable clathrin assembly protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-55  185.8   1.2    4.4e-55  185.5   1.2    1.1  1  Clat_adaptor_s  Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.5   1.2   2.5e-59   4.4e-55       1     141 [.      97     238 ..      97     239 .] 0.98

  Alignments for each domain:
  == domain 1  score: 185.5 bits;  conditional E-value: 2.5e-59
                     -EEEEEEE-TTS-EEEEEESSSS-CHHHHHHHHHHHHHHHTT-SSS.-SEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHH CS
  Clat_adaptor_s   1 mikaililnkkgkvrlakfytavddkkkqklieevyelvsaRdskl.sniveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdky 94 
                     m+ +ili+n++gk+rlak+y +++d++k kl  ev++l++ Rd+k+ sn+ve+++ +++Y+rya+L+F+ +vd+++nel++le++h fve+Ld +
      CCE28720.1  97 MLSFILIQNRQGKTRLAKWYAPYSDDEKIKLKGEVHRLIAPRDQKYqSNFVEFRNNRIVYRRYAGLFFCACVDTNDNELAYLEALHFFVEVLDSF 191
                     789*****************************************988************************************************ PP

                     CTS-SHHHHHHCHHHHHHHHHCCEETTEES---HHHHHHCHHHHHHH CS
  Clat_adaptor_s  95 fgnVceldlvfnfekvylildEivsgGeiletskkevlkrvelldkl 141
                     fgnVceldlvfnf+kvy+ildE++ +Gei etsk+ vl r+e ldkl
      CCE28720.1 192 FGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKL 238
                     ********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1745.81
//
Query:       CCE28721.1  [L=626]
Description: uncharacterized protein CPUR_02409 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-09   36.8   1.2    2.4e-09   36.8   1.2    1.8  2  zf-CCHC_2     Zinc knuckle
    0.00015   21.7  23.8    0.00035   20.5  23.8    1.6  1  Trypan_PARP   Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   1.9         2   1.8e+04      15      19 ..      92      96 ..      92      96 .. 0.96
   2 !   36.8   1.2   2.7e-13   2.4e-09       1      21 []     297     318 ..     297     318 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 2
   zf-CCHC_2 15 yIqdC 19
                +++dC
  CCE28721.1 92 WYWDC 96
                9**** PP

  == domain 2  score: 36.8 bits;  conditional E-value: 2.7e-13
   zf-CCHC_2   1 PpgYvChiCgkkG.HyIqdCPt 21 
                 P++Y+C +Cg++G Hy++dCP+
  CCE28721.1 297 PARYICTLCGAWGtHYVWDCPE 318
                 99*******************6 PP

>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5  23.8   3.9e-08   0.00035      58     113 ..     158     212 ..     140     228 .. 0.61

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.9e-08
  Trypan_PARP  58 dpepepepepepepepepepepetepeeepepepepepepepepepepepepepga 113
                  d++p+ + + epep+ +++   +++pe+e+e epepe e e+epep +epepep +
   CCE28721.1 158 DAKPKLKAKTEPEPKMKAKTS-KSKPEPESESEPEPEHESESEPEPGSEPEPEPQT 212
                  444444444444444443333.3667777777777777777777777777777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4122.25
//
Query:       CCE28722.1  [L=309]
Description: uncharacterized protein CPUR_02410 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-61  205.0   4.1    9.4e-61  204.5   4.1    1.2  1  Ist1      Regulator of Vps4 activity in the MVB pathway
  ------ inclusion threshold ------
      0.082   12.7   0.1         10    5.9   0.0    2.5  2  GP57      Phage Tail fiber assembly helper gene product 57


Domain annotation for each model (and alignments):
>> Ist1  Regulator of Vps4 activity in the MVB pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.5   4.1   1.1e-64   9.4e-61       1     164 []      12     173 ..      12     173 .. 0.99

  Alignments for each domain:
  == domain 1  score: 204.5 bits;  conditional E-value: 1.1e-64
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT--SSSSSHHHHHHHHHHHHHH- CS
        Ist1   1 KtqlklaiqrlkllqkkkealakqarrdiaqlLengkeekArirveqliredillelleilelycelllarlsllekqkeldeelkEAvssliyAaprv 99 
                 K+qlklai+rl+++q+++e+l k+++r +aqlLe+gk ++A irve++ir di++el e+lelycelllar +l+e ++ +d++l+EA++s+iyAap++
  CCE28722.1  12 KVQLKLAIARLRMVQQRDEQLGKAQQRAMAQLLEAGKIDSATIRVENIIRSDITTELHEMLELYCELLLARAGLME-SSVCDPGLEEAIKSIIYAAPKT 109
                 89**************************************************************************.699******************* PP

                 TTTTTHHHHHHHHHTTS-HHHHHHHHTT-T.T--HHHHHHHS-----HHHHHHHHHHHHHHHT-S CS
        Ist1 100 selkELkelrdllaekyGkefakaavenkdngVnekvvkklsvktpskelvekylkeIAkeynve 164
                  e+kEL ++r+llaekyGkef+ +a+en d +Vnekvv+klsv++p++elv+ yl+eIA++y+v+
  CCE28722.1 110 -EIKELITVRQLLAEKYGKEFVLSAMENADGKVNEKVVRKLSVEPPKQELVQGYLEEIARAYGVD 173
                 .***************************999*******************************996 PP

>> GP57  Phage Tail fiber assembly helper gene product 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.005        45      36      63 ..      34      61 ..      13      68 .. 0.85
   2 ?    5.9   0.0    0.0011        10      36      51 ..     157     172 ..     148     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.005
        GP57 36 kilqGtlaeiaravGitGdtikveeive 63
                k  q ++a++  a  i   ti+ve+i+ 
  CCE28722.1 34 KAQQRAMAQLLEAGKIDSATIRVENIIR 61
                667889999999999**********986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0011
        GP57  36 kilqGtlaeiaravGi 51 
                  ++qG l eiara G+
  CCE28722.1 157 ELVQGYLEEIARAYGV 172
                 579**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2203.98
//
Query:       CCE28723.1  [L=1016]
Description: related to C.jejuni serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-53  177.1   0.1    1.1e-33  115.1   0.0    2.6  2  PDZ_1          PDZ-like domain
    2.1e-20   74.1   3.7    2.4e-19   70.7   0.3    2.7  3  Trypsin_2      Trypsin-like peptidase domain
    9.1e-15   54.2   0.0    5.8e-05   22.9   0.1    4.1  4  PDZ_6          PDZ domain
    2.9e-12   46.8   0.1    0.00017   21.8   0.0    4.4  4  PDZ_2          PDZ domain
    6.8e-08   32.7   0.0      0.012   16.0   0.0    3.8  3  PDZ            PDZ domain
    0.00031   20.6   0.2       0.11   12.5   0.1    3.6  3  Tricorn_PDZ    Tricorn protease PDZ domain
     0.0017   18.2   0.1     0.0046   16.8   0.1    1.7  1  Trypsin        Trypsin
  ------ inclusion threshold ------
      0.025   14.3   0.0      0.074   12.8   0.0    1.9  1  4HPAD_g_N      4-Hydroxyphenylacetate decarboxylase subunit g
      0.087   11.5   0.5        0.2   10.3   0.1    1.6  2  Peptidase_S46  Peptidase S46


Domain annotation for each model (and alignments):
>> PDZ_1  PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   5.3e-37   1.1e-33       1      78 []     394     470 ..     394     470 .. 0.98
   2 !   59.5   0.0   1.3e-19   2.5e-16       1      78 []     868     946 ..     868     946 .. 0.96

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 5.3e-37
       PDZ_1   1 aitpsrfvevaGatfhdLsyqlarsyaipvkgvyvseasgsfklsskekkgviitsinnqptpnLdefievvkkipdn 78 
                 +itp+rfv+vaGa+fh+Lsyq+ar ya++v+gvyv+e++gsf++++ +++g++ +si+++++p+L +f+evvk ipd+
  CCE28723.1 394 SITPDRFVSVAGASFHNLSYQQARLYAVAVQGVYVCESAGSFRFDN-TDSGWVMQSIDHKKVPDLATFVEVVKGIPDR 470
                 69******************************************99.*****************************96 PP

  == domain 2  score: 59.5 bits;  conditional E-value: 1.3e-19
       PDZ_1   1 aitpsrfvevaGatfhdLsyqlarsyaipvk..gvyvseasgsfklsskekkgviitsinnqptpnLdefievvkkipdn 78 
                 +i+++  v+++Ga++h+ ++ ++r+   +++  +++ s+ +gs++++++   +++it++n+qptp+L+ fi +++kipdn
  CCE28723.1 868 DIETDHAVSFCGAILHR-PHLAVRQQISKLHseVYVSSRIRGSPAYQYGLAPTNFITHVNGQPTPDLESFISATRKIPDN 946
                 5999*************.********99999978888999***************************************8 PP

>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.3   1.2e-22   2.4e-19       1     150 []     106     251 ..     106     251 .. 0.85
   2 ?   -3.5   0.0       8.7   1.7e+04      29      53 ..     471     495 ..     460     531 .. 0.62
   3 ?    3.7   0.1     0.054   1.1e+02      36     136 ..     601     701 ..     574     720 .. 0.70

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 1.2e-22
   Trypsin_2   1 GsGflvgsd.glilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkv..ssderaglpplplgpsealkggepvyvvGyplgg 96 
                 ++Gf+v+s+ g+ilTn+Hvv+      +         ++++ +ev+  +v++dp +D+ +l+   s      ++ l l+p++a +g  ++ vvG+ + g
  CCE28723.1 106 ATGFVVDSErGYILTNRHVVGAGPFWGH--------CVFDNHEEVDCYPVYRDPVHDFGILRYdtSAIKYMLVDGLDLRPDQAKVGV-EIRVVGN-DAG 194
                 69*****9977*********88888888........79*************************666666667777778887766555.*******.777 PP

   Trypsin_2  97 eksgsvssGivsgvvesesaasgegesfl.....qtdaatspGsSGGplfdsdGrvvGl 150
                 ek  s+ sG++s++++ +  + geg+s +     q++aa s+GsSG+p++ +dG  v+l
  CCE28723.1 195 EKL-SILSGVISRLDR-NAPEYGEGYSDFntcyyQANAAASGGSSGSPVVSKDGSAVAL 251
                 776.************.55555555555567778*********************9997 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.7
   Trypsin_2  29 aikkkveeagadgrevpakvvaadp 53 
                 a+ ++ +++ +d +++ ++vv++d 
  CCE28723.1 471 ARVVVTYQHLRDLHTLNTTVVYVDR 495
                 4556667777777888888888885 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.054
   Trypsin_2  36 eagadgrevpakvvaadpelDlAllkv.ssderaglpplplgpsealkggepvyvvGyplggeksg..svssGivsgvvesesaasgegesflqtdaat 131
                 ++ ad   v+++vv  +p   + +++  +   +a++  ++l+++  l +g + y +G+ ++ ++    +++  ++++v   +  ++ ++++ +  da t
  CCE28723.1 601 VTIADSIMVEGQVVFLHPLQNYVIIRYdPALVDAPVKSARLSSEH-LTQGAKTYFLGH-NRIGRVVhgATTVTEITAVAI-PANSGAPRYRAVNVDAIT 696
                 677888899999999996559999999888888899999999966.55555*******.555554345555555555555.444555555555444444 PP

   Trypsin_2 132 spGsS 136
                    + 
  CCE28723.1 697 VDSNL 701
                 43333 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   2.9e-08   5.8e-05      16      56 .]     340     378 ..     330     378 .. 0.93
   2 ?   -2.7   0.0       2.8   5.5e+03      24      53 ..     448     475 ..     448     478 .. 0.74
   3 !    7.4   0.0     0.002       3.9      16      38 ..     817     837 ..     816     843 .. 0.88
   4 !   18.6   0.0   6.3e-07    0.0013       2      43 ..     902     941 ..     901     952 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.9e-08
       PDZ_6  16 lrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56 
                 ++ GD++++vNG+ +  ++   + ++l +s+g+ ++l+++r
  CCE28723.1 340 IEEGDVLIKVNGELI--TQFIRLDDILDSSVGKNIELQLQR 378
                 789************..**********************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
       PDZ_6  24 svNGqpveglsladvaallrgsagesvvlv 53 
                 s++ + v   +la +++ ++g ++++ v+v
  CCE28723.1 448 SIDHKKV--PDLATFVEVVKGIPDRARVVV 475
                 6899999..999999999995555555544 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.002
       PDZ_6  16 lrvGDiilsvNGqpveglsladv 38 
                 l  GDiil +NG+ +  +++ d+
  CCE28723.1 817 LLEGDIILTLNGRIC--TTISDF 837
                 678***********9..988875 PP

  == domain 4  score: 18.6 bits;  conditional E-value: 6.3e-07
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr 43 
                 V++ + gsPA++ Gl +   i+ vNGqp+   +l+ ++++ r
  CCE28723.1 902 VSSRIRGSPAYQYGLAPTNFITHVNGQPT--PDLESFISATR 941
                 888999***********************..99999888877 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   8.7e-08   0.00017      16      82 .]     324     389 ..     306     389 .. 0.84
   2 ?    3.3   0.0     0.053   1.1e+02      38      82 .]     446     490 ..     411     490 .. 0.90
   3 ?    3.8   0.0     0.037        74      32      56 ..     817     841 ..     803     848 .. 0.86
   4 !   12.0   0.0    0.0001       0.2       9      59 ..     895     943 ..     886     953 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 8.7e-08
                 EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE- CS
       PDZ_2  16 vlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevkl 82 
                 +lv+++   +  ++++++ gDv++kv+g  + ++      +l  + G++++l+++R+g++ tv++++
  CCE28723.1 324 MLVAEIILPSGLSDHKIEEGDVLIKVNGELI-TQFIRLDDILDSSVGKNIELQLQRGGQDVTVNIEV 389
                 56666665666677889**************.666666789999********************986 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.053
                 EEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE- CS
       PDZ_2  38 ilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevkl 82 
                   ++d+kkv +l+++ + + +      V +t+++  + +t++ ++
  CCE28723.1 446 MQSIDHKKVPDLATFVEVVKGIPDRARVVVTYQHLRDLHTLNTTV 490
                 5689******************************99999999875 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.037
                 --TT-EEEEETTB--SSHHHHHHHH CS
       PDZ_2  32 lkagDvilkvdgkkvksledlisll 56 
                 l  gD+il ++g+  ++ +d++ ++
  CCE28723.1 817 LLEGDIILTLNGRICTTISDFDVMY 841
                 789**********999999887555 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 0.0001
                 ----..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS CS
       PDZ_2   9 deedtggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkk 59 
                 ++++  +v+v s   g+Pa + gl++   i++v+g++  +le++is+ +k 
  CCE28723.1 895 KLHS--EVYVSSRIRGSPAYQYGLAPTNFITHVNGQPTPDLESFISATRKI 943
                 4444..899999999***************************999987765 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.9e-06     0.012      23      79 ..     315     376 ..     294     377 .. 0.72
   2 ?    2.9   0.0      0.07   1.4e+02      44      63 ..     817     836 ..     813     861 .. 0.76
   3 !    8.9   0.0   0.00093       1.9      26      61 ..     898     933 ..     888     943 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.9e-06
                 S....SSSSEEEEEECTT.SHHHHHTSSTTEEEEEETTEETTTS.HHHHHHHHHHTTTSEEEE CS
         PDZ  23 r....gdkgifvsevlpg.gaaeadglkvGDkIlsvNgvdvenv.sheeavqaikgskgkvtL 79 
                 r     +++  v+e+    g  + + +++GD++++vNg+ ++++ +++++ +   g++ +++L
  CCE28723.1 315 RsafpSETNMLVAEIILPsGLSDHK-IEEGDVLIKVNGELITQFiRLDDILDSSVGKNIELQL 376
                 4555555666777766555888888.*****************98888888888888666666 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.07
                 SSTTEEEEEETTEETTTSHH CS
         PDZ  44 lkvGDkIlsvNgvdvenvsh 63 
                 l +GD+Il  Ng+  +++s+
  CCE28723.1 817 LLEGDIILTLNGRICTTISD 836
                 669*********54444443 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00093
                 SSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTS CS
         PDZ  26 kgifvsevlpggaaeadglkvGDkIlsvNgvdvenv 61 
                  +++vs+  +g++a + gl +   I+ vNg+++ ++
  CCE28723.1 898 SEVYVSSRIRGSPAYQYGLAPTNFITHVNGQPTPDL 933
                 689***************************998765 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   5.4e-05      0.11      39      82 ..     339     382 ..     332     387 .. 0.87
   2 ?    1.0   0.0      0.21   4.2e+02      38      67 ..     815     844 ..     812     855 .. 0.80
   3 ?    1.8   0.0      0.12   2.4e+02      30      58 ..     908     934 ..     892     943 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.4e-05
                  --.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-STT- CS
  Tricorn_PDZ  39 nvreGdlilavdgepvskekgiaelLvgkagkeveLtvkrkdgk 82 
                  +++eGd++++v+ge +++   ++ +L +  gk++eL+++r++++
   CCE28723.1 339 KIEEGDVLIKVNGELITQFIRLDDILDSSVGKNIELQLQRGGQD 382
                  467************************************97654 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.21
                  ---.TT-EEEEETTEE-BTTB-HHHHHHTT CS
  Tricorn_PDZ  38 vnvreGdlilavdgepvskekgiaelLvgk 67 
                  v + eGd+il ++g+  ++ ++++ +  ++
   CCE28723.1 815 VSLLEGDIILTLNGRICTTISDFDVMYSNE 844
                  56679**********999988887766665 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.12
                  B-GGGGGS---.TT-EEEEETTEE-BTTB CS
  Tricorn_PDZ  30 rSPLaepGvnvreGdlilavdgepvskek 58 
                   SP  ++G++    + i++v+g+p+   +
   CCE28723.1 908 GSPAYQYGLA--PTNFITHVNGQPTPDLE 934
                  5899999999..789*********87655 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.3e-06    0.0046      16     200 ..     100     256 ..      85     267 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.3e-06
                 EEEEETTCEEEEEEEEEETT..EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCST CS
     Trypsin  16 vslsvksgkhlCgGslisen..wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaa 112
                 ++l+ +     ++G++++++  ++lT+ H+v       +  g   +  + +   +++         y++    +D+++l+ ++++     v  ++l+  
  CCE28723.1 100 AALTSE-----ATGFVVDSErgYILTNRHVVGA----GPFWGH-CVFDNHE---EVDCYP-----VYRDPV--HDFGILRYDTSAIKYMLVDGLDLRPD 178
                 444443.....58****99889**********7....444564.3333333...344444.....355555..6***********************95 PP

                 THTTSTTTEEEEEESSBSSTSSBSSBEEEEEEEEEEHHHHHHH.TTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEES CS
     Trypsin 113 ssslpvgttclvsGwgrtkekgksdtlqevevpvvsretcksa.ykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgk 200
                 +  ++vg ++ v+G +  ++ +    l  + ++ ++r   +   y++ +++   c      +++a  G SG+P+v +dg +v +  +g+
  CCE28723.1 179 Q--AKVGVEIRVVGNDAGEKLS---ILS-GVISRLDR---NAPeYGEGYSDFNTCYYQ--ANAAASGGSSGSPVVSKDGSAVALQAGGR 256
                 5..59**99****999988888...444.33333344...222356666666666666..56699**************7776666663 PP

>> 4HPAD_g_N  4-Hydroxyphenylacetate decarboxylase subunit gamma N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.7e-05     0.074      12      29 ..     578     595 ..     576     596 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.7e-05
   4HPAD_g_N  12 lDceKGiCrltkeivpiD 29 
                 +D+ KG+ + ++ ivp+D
  CCE28723.1 578 IDADKGLVLISRAIVPYD 595
                 8****************9 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.48   9.6e+02      46      67 ..     103     125 ..      93     127 .. 0.80
   2 ?   10.3   0.1    0.0001       0.2     620     664 ..     220     265 ..     203     271 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.48
                    TTTEE-EE-.STT-EEEE-HHHH CS
  Peptidase_S46  46 lggCtasfV.SpeGLvlTNHHCa 67 
                    ++  t+ +V S++G +lTN H++
     CCE28723.1 103 TSEATGFVVdSERGYILTNRHVV 125
                    4667888887999********86 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0001
                    B-EEEEE.ES----TT-TT-EEE-TTS-EEEEEEEE-GGGTTTTT- CS
  Peptidase_S46 620 svpvnfl.stnDitGGNSGSPvlngkgelvGlaFDgnieslsgdil 664
                    + + ++  +++   GG SGSPv+ ++g+ v l   g  ++ s d++
     CCE28723.1 220 DFNTCYYqANAAASGGSSGSPVVSKDGSAVALQAGGRSDGASTDYF 265
                    55555541677789********************999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1016 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 7378.51
//
Query:       CCE28724.1  [L=830]
Description: uncharacterized protein CPUR_02412 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-20   70.8   1.8    1.7e-19   69.7   1.8    1.6  1  DnaJ             DnaJ domain
  ------ inclusion threshold ------
      0.049   14.1   0.1       0.16   12.5   0.1    1.8  1  Poxvirus_B22R_N  Poxvirus B22R protein N-terminal


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   1.8   1.9e-23   1.7e-19       1      63 []       6      69 ..       6      69 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.9e-23
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH.HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdp.eaeekFkeineAyevLsdpekRkqYD 63
                dyY+ L++++da+ ++Ikk++rklalkyHPD+np+ + + + kF+ i++A+evLs+p+++++ D
  CCE28724.1  6 DYYADLELPRDADVSDIKKQFRKLALKYHPDRNPGREqDVNAKFQIIQAAHEVLSNPSEKAKHD 69
                8********************************999989999*****************99987 PP

>> Poxvirus_B22R_N  Poxvirus B22R protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.7e-05      0.16      30      70 ..     772     812 ..     750     820 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.7e-05
  Poxvirus_B22R_N  30 atvkyldsvekaeaelleekfnWtkikeevkeeFkskCens 70 
                       +++ +  ++ ++  +++e fnW ++ ++v++++ ++C+++
       CCE28724.1 772 RATRGYAFLTSRDDTEIQEYFNWVQLDNDVRRRWMDACTEH 812
                      5566777889999999**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 5654.27
//
Query:       CCE28725.1  [L=189]
Description: uncharacterized protein CPUR_02413 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-11   42.4   0.0      6e-11   41.8   0.0    1.3  1  CUE         CUE domain
  ------ inclusion threshold ------
      0.011   16.0   0.5      0.023   14.9   0.5    1.5  1  UMP1        Proteasome maturation factor UMP1
      0.072   13.2   1.1       0.13   12.3   1.1    1.8  1  SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
       0.63    9.7   8.7        1.6    8.4   8.7    1.7  1  G2BR        E3 gp78 Ube2g2-binding region (G2BR)


Domain annotation for each model (and alignments):
>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.3e-14     6e-11       1      41 [.      46      86 ..      46      87 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.3e-14
                CHHHHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHHC CS
         CUE  1 reqmletLkemFPdldeevIravLrasngnvEatinaLLeg 41
                re ++e +++mFP+ d+  I ++L++++gn+  t++++L g
  CCE28725.1 46 REAAVERVQQMFPQTDRRSILWDLQRNGGNIQHTTERILAG 86
                5789***********************************98 PP

>> UMP1  Proteasome maturation factor UMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.5   5.1e-06     0.023      16      67 ..     130     182 ..     117     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.1e-06
        UMP1  16 slksql.nssHpLesrlknweetqeklklemlrniyGlaePlrrqmElkivsk 67 
                 +lks++ +  H+ e+  k w++++e+++ + +r+   + +++rr+mE ki+ +
  CCE28725.1 130 NLKSKIeAGIHEEEKKGKGWSSNREERQSTLQRRRDEMILAARRKMEAKIAAE 182
                 67777756779999999*********************************976 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.1     3e-05      0.13       8      33 ..      31      56 ..      28     165 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3e-05
  SUIM_assoc  8 qtsgtqltsEeLrkrreaYFEKqeqq 33
                qtsg   + E+ r+ rea  E+ +q 
  CCE28725.1 31 QTSGLARSREDVRRSREAAVERVQQM 56
                9*********************3332 PP

>> G2BR  E3 gp78 Ube2g2-binding region (G2BR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   8.7   0.00036       1.6       3      22 ..     154     173 ..     153     175 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00036
        G2BR   3 dERQRMLvqRKEdLLqqARR 22 
                 +ERQ  L  R +++++ ARR
  CCE28725.1 154 EERQSTLQRRRDEMILAARR 173
                 8******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1476.01
//
Query:       CCE28726.1  [L=410]
Description: uncharacterized protein CPUR_02414 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-26   93.2   1.1    2.1e-26   92.6   1.1    1.3  1  NOT2_3_5  NOT2 / NOT3 / NOT5 family


Domain annotation for each model (and alignments):
>> NOT2_3_5  NOT2 / NOT3 / NOT5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   1.1   1.1e-30   2.1e-26       9     131 .]     283     399 ..     275     399 .. 0.84

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 1.1e-30
    NOT2_3_5   9 sedaekprqyep..klphptsisypqeplyekle.sakklekldedtLFyiFYysqgtleqllAakeLkkrsWryhkelktWflreekeepkekteeye 104
                  +++ +p+      +lp++    y+ ++     +  + k+++++e+tLF+iFY+++ ++ q lA+keL++r+Wr+h ++++W++++e+++p+  ++++e
  CCE28726.1 283 DDKPPRPTVAATkvRLPEC----YNVTNV----QpIETKIQNFSEETLFWIFYSCPLDVRQQLASKELYSRNWRWHMRHQVWLTKDEHMTPQILSPNHE 373
                 5555555333334488888....976663....336679***********************************************999********** PP

    NOT2_3_5 105 kgsYkyFDyetWlkrrkkdfkleyekL 131
                 +g Y+++D e W+k r ++ +l y +L
  CCE28726.1 374 RGFYVVWDPELWRKDR-RELTLFYGDL 399
                 ********87*****9.9999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3009.51
//
Query:       CCE28727.1  [L=373]
Description: related to dopamine-responsive protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-47  159.9   0.1    6.2e-47  159.4   0.1    1.1  1  cobW         CobW/HypB/UreG, nucleotide-binding domain
    6.5e-06   26.0   0.0    1.2e-05   25.1   0.0    1.4  1  CobW_C       Cobalamin synthesis protein cobW C-terminal doma
    0.00012   22.1   0.3       0.22   11.4   0.0    2.3  2  RsgA_GTPase  RsgA GTPase
     0.0023   18.0   0.0      0.043   13.9   0.0    2.5  2  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.011   15.3   0.3          6    6.4   0.1    2.8  3  GTP_EFTU     Elongation factor Tu GTP binding domain
      0.012   16.1   0.1      0.023   15.2   0.1    1.4  1  AAA_23       AAA domain
      0.022   15.1   0.0       0.05   14.0   0.0    1.5  1  AAA_16       AAA ATPase domain
      0.029   13.4   1.0        2.1    7.3   0.1    2.9  3  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
       0.03   14.1   0.3      0.088   12.6   0.0    1.9  2  AAA_29       P-loop containing region of AAA domain
      0.034   14.2   0.1      0.078   13.0   0.1    1.6  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
      0.044   14.1   0.8       0.41   10.9   0.1    2.2  2  AAA_22       AAA domain
      0.051   12.8   0.4        4.9    6.3   0.1    2.2  2  Septin       Septin
      0.078   13.5   0.3       0.86   10.1   0.1    2.5  3  ABC_tran     ABC transporter
       0.09   11.8   0.2       0.18   10.8   0.2    1.4  1  T2SSE        Type II/IV secretion system protein
       0.11   13.0   0.1       0.61   10.6   0.1    2.1  2  AAA_18       AAA domain
       0.12   12.1   0.8       0.24   11.1   0.1    1.7  2  AAA_30       AAA domain


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.1   5.6e-50   6.2e-47       1     174 [.      30     226 ..      30     228 .. 0.94

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 5.6e-50
                 EEEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SS.CHCCCCCCHCCCT.....EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEEECTTT CS
        cobW   1 pvtvltGflGsGKTtLlnhllenraglklavivNefge.vsiDaellretgve....ivelenGciCctlredllkelealeereerldviliEttGla 94 
                 p+t++tG+lG+GKTtLln +l+ ++g+k+avi+Nefg+ ++i+++l  ++g e    ++++ nGciCc++++  ++++e+l+e+++ +d+il+EttGla
  CCE28727.1  30 PITIVTGYLGAGKTTLLNYILTAQHGKKIAVIMNEFGDsLDIEKSLTVNQGGEgveeWLDVGNGCICCSVKDTGVNAIESLMEKKGAFDYILLETTGLA 128
                 789**********************************999*******9995445667****************************************** PP

                 THHHH..HTT.SHHHHHCCCECEEEEEEETTTH.................CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHHHHHHTTS- CS
        cobW  95 ePapv..aft.eeelksdltldavvavvDaknl................eaeeekieekaedqlaaadllvlnKtDlldeeallekleerlrqlnpeak 174
                 +P  +  +f+ ++ l s + ld++v++vDakn+                ++++ +  ++a+ q+  ad++++nK Dl+++++l e +++r++++n+ ak
  CCE28727.1 129 DPGNIapLFWvDDGLGSTIYLDGIVTLVDAKNVlrsldeatgeapghehHDDHGPLMTTAHVQISHADVILINKSDLVSADEL-ELVKARIQSINRVAK 226
                 *****987888***********************************998888889999***********************77.**********99876 PP

>> CobW_C  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.1e-08   1.2e-05      27      92 ..     308     370 ..     287     372 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.1e-08
      CobW_C  27 egilRaKGivwlagkpdalvlqgvggrlrlepagawwaaededrrseLVfIGrdldkealeeaLda 92 
                  +i R+KG + +++  +a +lqgv+++++l+ a+++ +   ++ + ++++IGr+l+++a+ +++d+
  CCE28727.1 308 FEIHRSKGRIVFDDG-TAKMLQGVREVFELSDAPRAGEV--QPEQGKIILIGRNLSEAAFVQSFDQ 370
                 5799********999.7999***********66666555..********************99987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0    0.0002      0.22      98     124 ..      28      54 ..      10      67 .. 0.76
   2 !    8.5   0.1    0.0015       1.7      48      94 ..     195     239 ..     183     247 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
                  TTSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpele 124
                  k  ++++ G  G+GK+tL+n +l  ++
   CCE28727.1  28 KVPITIVTGYLGAGKTTLLNYILTAQH 54 
                  447899***************998654 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0015
                  EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHH CS
  RsgA_GTPase  48 epvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelk 94 
                    vi++nK Dl++ +e le +k+++++++ +v +++ ++k+ + +l+
   CCE28727.1 195 ADVILINKSDLVSADE-LELVKARIQSIN-RVAKLHITEKSVVPQLE 239
                  4589************.********9995.66666666666666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.35   3.9e+02      47      60 ..       8      21 ..       2      29 .. 0.69
   2 !   13.9   0.0   3.8e-05     0.043       3      86 ..      33     159 ..      31     203 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.35
                EEEEEECGGCSSHH CS
    MMR_HSR1 47 eielvDtpGliega 60
                + elvDt+G i+++
  CCE28727.1  8 PPELVDTAGHIQQE 21
                5689*****88632 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.8e-05
                 EEEESTTSSHHHHHHHHHT....S.TEEESSSTTSSSSEEEEEEEETTEE....................................EEEEECGGCSS.H CS
    MMR_HSR1   3 aivGrpNvGKStLinaltg....e.kaivsdkpgtTrdinegrvklkgke....................................ielvDtpGlie.g 59 
                 ++ G+  +GK+tL+n ++     +  a + ++ g  +di++     +g e                                    ++l+ t Gl + g
  CCE28727.1  33 IVTGYLGAGKTTLLNYILTaqhgKkIAVIMNEFGDSLDIEKSLTVNQGGEgveewldvgngciccsvkdtgvnaieslmekkgafdYILLETTGLADpG 131
                 689**************9633333367779999999999666433222224666777777777777777777777777777777777777787754344 PP

                 HHHHH.HHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  60 aseek.glgkaflaleeadlillvvdas 86 
                 +     ++ + + + +  d i+ +vda+
  CCE28727.1 132 NIAPLfWVDDGLGSTIYLDGIVTLVDAK 159
                 4444456666666666677777777765 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.3   2.5e+03      74      81 ..      11      18 ..       9      22 .. 0.87
   2 ?    6.4   0.1    0.0054         6       6      30 ..      32      56 ..      28      78 .. 0.74
   3 ?    6.1   0.0    0.0062         7     123     153 ..     190     224 ..     138     335 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.3
                EEEESSSG CS
    GTP_EFTU 74 liDtPGHv 81
                l+Dt GH+
  CCE28727.1 11 LVDTAGHI 18
                89*****7 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0054
                EEEEESTTSSHHHHHHHHHHHTTSS CS
    GTP_EFTU  6 igiighvDhGKtTLtdrLlyktgai 30
                 ++ g + +GKtTL+  +l++ +  
  CCE28727.1 32 TIVTGYLGAGKTTLLNYILTAQHGK 56
                57889999**********9877654 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0062
                 TE....EEEEEESCGST.HHHHHHHHHHHHHHHHHH CS
    GTP_EFTU 123 vp....iivfiNKmDrl.kaelkeiveevkqklsrk 153
                 v+     +++iNK D +  +el+ ++  ++ +++r+
  CCE28727.1 190 VQishaDVILINKSDLVsADELELVKARIQ-SINRV 224
                 433344699********7666776666666.55333 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   2.1e-05     0.023      20      45 ..      30      55 ..      17      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.1e-05
      AAA_23 20 gltlItGpNGaGKTTildAiklaLyg 45
                ++t++tG  GaGKTT+l+ i  a  g
  CCE28727.1 30 PITIVTGYLGAGKTTLLNYILTAQHG 55
                89****************99887655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.5e-05      0.05      25      60 ..      30      65 ..      17      79 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.5e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekdggiflrgkc 60
                ++++++G+ G GK++l++ +l+a  ++++ ++  ++
  CCE28727.1 30 PITIVTGYLGAGKTTLLNYILTAQHGKKIAVIMNEF 65
                799******************988888777765555 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0018       2.1      34      63 ..      34      61 ..      13      67 .. 0.86
   2 ?   -0.5   0.0      0.42   4.7e+02     116     132 ..     110     127 ..     100     130 .. 0.79
   3 ?    2.8   0.1     0.044        50     169     189 ..     195     215 ..     188     239 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0018
                EEE-TTSSHHHHHHHHHHHHHCTT--EEEE CS
        MeaB 34 ltGvPGaGkstlvealglelrrrGkrvavl 63
                +tG  GaGk tl++ + +  +++Gk++av+
  CCE28727.1 34 VTGYLGAGKTTLLNYILT--AQHGKKIAVI 61
                89***********98866..689*****98 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.42
                 HHHHTT.-SEEEEEEESS CS
        MeaB 116 lleaaG.fDvvlietvGv 132
                 l+e  G fD +l+et G 
  CCE28727.1 110 LMEKKGaFDYILLETTGL 127
                 6666665********996 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.044
                 -SEEEEE---HHHHHHHHHHH CS
        MeaB 169 aDiivvnkaDkkeaekaarel 189
                 aD+i +nk+D+  a++ +   
  CCE28727.1 195 ADVILINKSDLVSADELELVK 215
                 9*********76665544333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.8e-05     0.088      20      50 ..      26      54 ..      16      64 .. 0.73
   2 ?   -2.8   0.0       5.1   5.7e+03      37      43 ..     154     160 ..     145     162 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.8e-05
      AAA_29 20 dlkg.atlltGpsGsGKSTllDAiqalLvpak 50
                 +k  +t++tG  G+GK+Tll   +++L++++
  CCE28727.1 26 AVKVpITIVTGYLGAGKTTLL---NYILTAQH 54
                3344489*************9...56666554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.1
      AAA_29  37 TllDAiq 43 
                 Tl+DA +
  CCE28727.1 154 TLVDAKN 160
                 7888865 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     7e-05     0.078      20      43 ..      30      53 ..       9      61 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7e-05
                EEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE 20 dvilLeGdLGaGKTtlvrglakal 43
                 + + +G LGaGKTtl   ++ a 
  CCE28727.1 30 PITIVTGYLGAGKTTLLNYILTAQ 53
                247899***********9998875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00037      0.41       7      30 ..      31      54 ..      28      84 .. 0.82
   2 ?    1.1   0.1      0.39   4.4e+02      54     114 ..     159     216 ..     152     235 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00037
      AAA_22  7 ilvvtGesGtGKTtllrrlleqld 30
                i++vtG  G+GKTtll+ +l   +
  CCE28727.1 31 ITIVTGYLGAGKTTLLNYILTAQH 54
                799**************9998874 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.39
      AAA_22  54 kdllrellralglelka.erlsseellealeqalraravielliiDEaqhlrseealeeLrs 114
                 k++lr l +a+g+   +   ++   l+++ + ++++++v   ++i   + + s++ le ++ 
  CCE28727.1 159 KNVLRSLDEATGEAPGHeHHDDHGPLMTTAHVQISHADV---ILINKSDLV-SADELELVKA 216
                 556666666666666662222333333555555555555...555555555.5555555533 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.016        18       8      32 ..      33      57 ..      28      87 .. 0.72
   2 ?    6.3   0.1    0.0044       4.9     147     179 ..     199     231 ..     187     246 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.016
                EEEEBTTSSCCCCCCTTSSSS---- CS
      Septin  8 mvvGesglGkttlintlfetdliee 32
                +v G  g Gkttl+n +++ +  ++
  CCE28727.1 33 IVTGYLGAGKTTLLNYILTAQHGKK 57
                689************9998776555 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0044
                 EESSGGGS-HHHHHHHHHHHHHHHHHTT----- CS
      Septin 147 viaKaDtltkeElkefKkkireeleeeeikiyk 179
                 +i K+D + ++El+ +K +i++  +  +++i +
  CCE28727.1 199 LINKSDLVSADELELVKARIQSINRVAKLHITE 231
                 799*****************9988888887765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00077      0.86      14      37 ..      32      55 ..      27      79 .. 0.82
   2 ?   -2.8   0.0       7.3   8.2e+03      44      67 ..     200     224 ..     188     272 .. 0.57
   3 ?    0.1   0.0      0.94   1.1e+03      32      51 ..     342     361 ..     342     372 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00077
                EEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkp 37
                + ++G  GaGK+tLl+ ++   + 
  CCE28727.1 32 TIVTGYLGAGKTTLLNYILTAQHG 55
                5678999**********9987664 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.3
                 ETTCEGGG.B-HHHCCHCEEEE-SS CS
                 xxxxxxxx.xxxxxxxxxxxxxxxx RF
    ABC_tran  44 ldgkdlke.qeleslrkeigvlpqe 67 
                 +++ dl + +ele ++++i+ +   
  CCE28727.1 200 INKSDLVSaDELELVKARIQSINRV 224
                 4444444434455555555544444 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.94
                 TTSS--SEEEEEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  32 agllkpteGeilldgkdlke 51 
                 ag+++p++G+i l g++l+e
  CCE28727.1 342 AGEVQPEQGKIILIGRNLSE 361
                 5899*******999999887 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00016      0.18     131     159 ..      31      59 ..      14      77 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
       T2SSE 131 lilvsGgTgsGKttllyallkeinksder 159
                 + +v+G  g GKttll+ +l+  + ++  
  CCE28727.1  31 ITIVTGYLGAGKTTLLNYILTAQHGKKIA 59 
                 569**************999876655444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00054      0.61       2      19 ..      33      52 ..      33      86 .. 0.79
   2 ?   -1.1   0.0       2.4   2.7e+03      29      63 ..     291     329 ..     281     364 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00054
      AAA_18  2 lltGtpGvGKttlakeL..s 19
                ++tG+ G+GKttl +++  +
  CCE28727.1 33 IVTGYLGAGKTTLLNYIltA 52
                79***********9998443 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.4
      AAA_18  29 rdvakenglllevdpe....aldeskrldedkldkllda 63 
                 r+v+++n l  ++++       ++ +++ +d ++k l++
  CCE28727.1 291 RSVLWDNKLPGSNEEIdfeiHRSKGRIVFDDGTAKMLQG 329
                 566666666666666655444444444445555554444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00022      0.24      20      49 ..      31      60 ..      17      64 .. 0.77
   2 ?   -2.2   0.0       2.5   2.8e+03      71     107 ..     185     213 ..     150     227 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
      AAA_30 20 vavltGpAGtGKttalkalreaweaaggrv 49
                ++++tG+ G+GKtt+l+ +  a + ++  v
  CCE28727.1 31 ITIVTGYLGAGKTTLLNYILTAQHGKKIAV 60
                799**************9987766655555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
      AAA_30  71 stiakllkrlkgrarlepgtllivDEagmvdtkqlaa 107
                 +t+a+        +++++++++++  + +v++++l+ 
  CCE28727.1 185 MTTAH--------VQISHADVILINKSDLVSADELEL 213
                 33333........444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2575.34
//
Query:       CCE28728.1  [L=586]
Description: related to cell cycle regulation Mob3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-23   81.5   0.3    1.1e-22   80.9   0.3    1.2  1  Mob1_phocein  Mob1/phocein family
  ------ inclusion threshold ------
      0.076   13.3   3.3       0.16   12.2   3.3    1.5  1  CxC6          CxC6 like cysteine cluster associated with KDZ 


Domain annotation for each model (and alignments):
>> Mob1_phocein  Mob1/phocein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.3   1.2e-26   1.1e-22      10     166 ..     127     286 ..     118     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 1.2e-26
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx RF
  Mob1_phocein  10 keavklPkgedlneWlavhvvdffneinll.ygtis..efcteqscptmsagpkyeYlwadeevkkpvklsApeYidllmdwiesqlnd..lfpska 101
                    ++ + P g+d+  Wl++ ++ ++ + n+l +g++     c++++cp+m+a  ++++l+a +  ++p +++A++Y+ +++dw+++ ++d  lfps+ 
    CCE28728.1 127 VQIATPPAGIDRTIWLYELCRFLIAQCNTLiVGFLFdsPPCSATTCPEMRAS-EWQFLCAVH--EQPKSCCAIDYCCHTLDWAANVVSDqkLFPSRF 220
                   578889***************9999999751566542379***********7.8*******7..69999**********************788777 PP

                   x....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein 102 g....spfpknflkvvkkilkrlfrvyaHiYihHfeeiaeleleahlntcfkhfvlfvkeFkLidkkel 166
                        ++ +++  k + ++++rl r++aH++++H++ + ++e+++ l  +   f ++++ ++L+ ++++
    CCE28728.1 221 AvlsdTHSKNTGVKNLVNVFRRLHRIFAHAWFQHRSVFWSVESHSGLYIL---FKTVCDLYDLLPAENY 286
                   64433566677789999******************************999...5677888888877765 PP

>> CxC6  CxC6 like cysteine cluster associated with KDZ transposases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.3   1.8e-05      0.16      10      47 ..     165     202 ..     159     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
        CxC6  10 pcCavhdCtepLennrdrFCaeHeelekiCavqgCenp 47 
                 p C++++C e+ ++  +  Ca He+ ++ Ca++ C + 
  CCE28728.1 165 PPCSATTCPEMRASEWQFLCAVHEQPKSCCAIDYCCHT 202
                 78************99******************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.47
# Mc/sec: 3768.08
//
Query:       CCE28729.1  [L=704]
Description: uncharacterized protein CPUR_02417 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.9e-08   31.2   5.9    9.9e-07   27.9   2.0    3.0  2  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   2.0   5.5e-11   9.9e-07       2      86 ..     264     348 ..     263     495 .. 0.81
   2 !    1.3   0.1    0.0066   1.2e+02      14      54 ..     541     601 ..     536     626 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 5.5e-11
  Fungal_trans_2   2 lldyyldnvapllspvpes.snpfrkvllplalsnkallhallalsafhlqskgpkdslereakrykslalkelqealaelsstls 86 
                     +l+y+++n++   + +p+   n f ++l  la   ++ll+a++ +sa+h + ++p+ +  +e ++y+++++++l e++++++++  
      CCE28729.1 264 YLNYFVENITSFHYSIPHDeANFFGRILPSLAVYYEPLLNAVVGFSAYHATLQDPNGQ-IQEFLKYYNRSVTLLLESINTKKMDNV 348
                     89*********9999999989999999999*******************977777776.79******************9998765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.0066
  Fungal_trans_2  14 lspvpessnpfrkvllplalsnk....................allhallalsafhlqskg 54 
                     +  +++s +p  +v+ ++a ++                       l+++l+l++++l    
      CCE28729.1 541 MHLSQSSDAPAEQVFAEMAKHAYtvcqyfetveywplkpkgalIPLQCCLSLASLFLPRDL 601
                     55667778889999999999999999999999999999999888899******99993222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.50
# Mc/sec: 4250.24
//
Query:       CCE28730.1  [L=425]
Description: uncharacterized protein CPUR_02418 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-12   45.6   0.0      3e-11   43.4   0.0    1.9  1  MOSC      MOSC domain
    1.1e-11   44.7   0.0    2.4e-11   43.6   0.0    1.6  1  MOSC_N    MOSC N-terminal beta barrel domain


Domain annotation for each model (and alignments):
>> MOSC  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   3.4e-15     3e-11       4     130 ..     284     413 ..     281     414 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 3.4e-15
                 ---GGGGSEEEEETHHHHHHHHHS..GGGGG-STTTT--SEEES-.......-TTT-BTT-E........EEETT.................EE----T CS
        MOSC   4 ihggdekavllisresldalneelkegrsveldpgrfreNivvggaaafeEdtwkelrigdr.......rfrlggacsRcqmvnvdqetga.rprepck 94 
                 + ++d  +++l + +s++al++ +++++              ++g ++++Ed+wk++r  ++        f++++++ Rc+++nvd+ tg+  + ep +
  CCE28730.1 284 VDFQDGFPIHLLNLSSIQALESLIQKDK--------------ISGPPEYDEDDWKSVRFRRSgmpeessVFTVTCHTVRCKLPNVDPATGVrHSVEPDR 368
                 6688889999999999999999995553..............668789***********55555555557*********************88999*** PP

                 HHHHHTTHHHHHHHHT---EEEEEEE-E.........EEETTS-E CS
        MOSC  95 tlakfrrvdkrvkgkgrfGvylrvleeg.........tvrvGdev 130
                  l k+r++d+++++ g+ G+ l ++ +          +v++G+ v
  CCE28730.1 369 SLRKYRQIDDGAPRMGCLGMQLCPVFPNtgtpaqlesYVEAGMDV 413
                 **********************99998888888888888888887 PP

>> MOSC_N  MOSC N-terminal beta barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   2.6e-15   2.4e-11       3      62 ..      82     148 ..      80     173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 2.6e-15
      MOSC_N   3 rvssLyvyPiKsckgvslseaevtaaGllalDReflvvd.ed..G.....kfltqrrePrlalirtel 62 
                 +++sL++yPiKsc+g++l + +v ++Gl  +DR f+  + +   G     + ltqr+ P la +++++
  CCE28730.1  82 TIKSLFIYPIKSCRGIELDRSRVLPTGLE-HDRLFTFAQlKPmaGqsgrwECLTQRQLPLLANVKVDV 148
                 79*************************86.*****9998422235888999***********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3025.22
//
Query:       CCE28731.1  [L=1180]
Description: probable chromosome segregation protein cut14 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.8e-71  238.7   0.3    5.2e-70  235.3   0.3    2.5  1  SMC_N        RecF/RecN/SMC N terminal domain
    1.6e-21   76.8   2.3    1.2e-20   73.9   0.3    3.1  3  SMC_hinge    SMC proteins Flexible Hinge Domain
    9.8e-10   38.7   5.9    0.00017   21.5   0.2    3.5  4  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00013   21.6   0.1    0.00032   20.4   0.1    1.5  1  AAA_29       P-loop containing region of AAA domain
  ------ inclusion threshold ------
       0.33   10.8  14.1       0.76    9.7   1.5    4.1  3  HSBP1        Heat shock factor binding protein 1
       0.72   10.0   2.4         30    4.8   0.1    2.8  2  HECW1_helix  Helical box domain of E3 ubiquitin-protein ligas
        1.2    9.1   5.6        7.5    6.6   0.1    3.9  3  DUF4250      Domain of unknown function (DUF4250)


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.3   0.3     2e-73   5.2e-70       3     215 ..       4    1166 ..       2    1170 .. 0.99

  Alignments for each domain:
  == domain 1  score: 235.3 bits;  conditional E-value: 2e-73
                  EEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE....SSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx RF
       SMC_N    3 krleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk....lkieke 95  
                   +++i++Fksya +tvi  +++sf++i+G NGSGKsn+ldAi+FvLG ++++++r+++l+dli+k + +a v+ka+v+i+fdn d k      +e +
  CCE28731.1    4 IEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQNLQDLIYK-RGQAGVTKASVTIVFDNRDTKkspiGFEEYS 99  
                  5799************************************************************9.9*****************9998776677788 PP

                  CEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT......................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................................... RF
       SMC_N   96 evsisrrvkrkgeseykingkevtkkevsellesagiske......................................................... 135 
                  ++s++r+++ +g+s+y ing++++++ v++l++s++++++                                                         
  CCE28731.1  100 SISVTRQIVLGGTSKYLINGHRAQQQTVQNLFQSVQLNINnpnflimqgritkvlnmkaveilamieeaagtrmfedrrdkalktmgkkelklqelr 196 
                  8************************************************************************************************ PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE28731.1  197 ellkdeiepkldklrtekrafldfqqtqndlerltrvvvaydyircqeklkqsasdleskkqrlklledsatrlkgelshleedvkkvraqrdrevk 293 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE28731.1  294 kggkaqaleedvkkhanelvrlatildlkkttlaeekekkrlvektvseletafqektaafddakacydkvkddlvkqtqeveskeellqtlqtgva 390 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE28731.1  391 skdgqengyqgqlqdaknrataaateqeqarikiahfqsrlkeeeprarkakeqnadllrgldglkaqterlekelqklgfqqdqeeqmykqesqlq 487 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE28731.1  488 qtvrtlrqdsdklkrqvanidfnyadptpgfdrtkvkglvaqlftldkdhtragtaleicaggrlynvvvdsevtgtqllqkgklrkrvtiiplnki 584 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE28731.1  585 aafkasaqtvataqsiapgkvdlalslvgyddeisaamdyvfgntlicadaetakrvtfdpnvrmrsitlegdaydpsgtlsggsapnssgvlvtlq 681 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE28731.1  682 klnhlsrqlreaenalrdiqakihqekskldqarrlkqdldlknheiklaqdqisgnssssiilevenmknsitelqsniteakarqveasadvkri 778 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE28731.1  779 ekdmkdfdtnkdaklielqksvdtlresleksssavkgvqkklqaaqldveqvgtdlsaareqlqeaelcikaalqdvdglskqqsaltdthdsvqs 875 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE28731.1  876 qlnaekakltlfddelraleeatrsknsriteeslemqklghqverfhkeqqssadnvahlesehewiqeekdkfgrsgtpydfqgqnigecksslr 972 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE28731.1  973 nltdrfqgmkkkinpkvmnmidsvekkemtlkhmiktvirdkrkieetivsldhykkkalhetwekvnrdfghifsellpggsfakldppegktisd 1069
                  ************************************************************************************************* PP

                  .................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEEEE CS
                  .................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 .................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtkve 215 
                                   +LSgG+++Lval+L++A+ ++kpap+y+lDe+daaLD ++++++ +l+k++ k +Qfiv+sl+++m+++a++++++++ e
  CCE28731.1 1070 glevkvclgkvwkqsltELSGGQRSLVALSLIMALLQFKPAPMYILDEVDAALDLSHTQNIGRLIKTRFKGSQFIVVSLKDGMFQNANRIFKTRFSE 1166
                  *******************************************************************************************998844 PP

>> SMC_hinge  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.26   6.6e+02      74      95 ..     220     248 ..     195     253 .. 0.73
   2 !   73.9   0.3   4.8e-24   1.2e-20       3     116 ..     522     641 ..     520     642 .. 0.93
   3 ?   -2.3   0.0       2.1   5.4e+03      74     103 ..     983    1013 ..     974    1030 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.26
   SMC_hinge  74 ndkns.......gavplidlvevddelrk 95 
                  ++ +       ++v + d+++++++l++
  CCE28731.1 220 FQQTQndlerltRVVVAYDYIRCQEKLKQ 248
                 3333355677889************9876 PP

  == domain 2  score: 73.9 bits;  conditional E-value: 4.8e-24
   SMC_hinge   3 gvlGrladlievdegye...kAveaalgnrlqalvvedeetakkiieflkkknagratflpldrikqknkadgandkns.....gavplidlvevddel 93 
                 +v G +a+l+++d+  +   +A+e+ +g+rl ++vv++e t +++++  k +  +r+t++pl++i  ++ + ++    +     ++  +++lv +dde+
  CCE28731.1 522 KVKGLVAQLFTLDKDHTragTALEICAGGRLYNVVVDSEVTGTQLLQKGKLR--KRVTIIPLNKIAAFKASAQTVATAQsiapgKVDLALSLVGYDDEI 618
                 689**********8877799*************************9877777..79************999988877779******************* PP

   SMC_hinge  94 rkalryllgdtlvvdsldeAeel 116
                 ++a++y++g+tl++ + ++A+++
  CCE28731.1 619 SAAMDYVFGNTLICADAETAKRV 641
                 ********************987 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.1
   SMC_hinge   74 ndknsgavplidlvevdde.lrkalryllgd 103 
                  +++n+++  +id ve ++  l+++++ +++d
  CCE28731.1  983 KKINPKVMNMIDSVEKKEMtLKHMIKTVIRD 1013
                  4455588888888888888888888777665 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.2   6.7e-08   0.00017       1      26 [.      27      59 ..      27     103 .. 0.74
   2 ?   -3.5   0.0       2.8   7.2e+03     121     165 ..     398     445 ..     389     486 .. 0.62
   3 ?   -2.0   0.1      0.94   2.4e+03     113     147 ..     709     743 ..     683     804 .. 0.77
   4 !   18.7   0.0   4.9e-07    0.0013     233     296 ..    1084    1147 ..    1010    1147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 6.7e-08
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl.......d 26
                +n ++G NgsGKSn+Lda+ ++ ++       +
  CCE28731.1 27 FNSITGLNGSGKSNILDAICFVLGItnmstvrA 59
                799****************88877766665442 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.8
      AAA_21 121 gvsvfslkelsvsepndlqfgkaltditsrawsllllldglrke...r 165
                 g+++  + +++++ + + ++++a+++i ++ ++l+++    rk+   +
  CCE28731.1 398 GYQGQLQDAKNRATAAATEQEQARIKIAHFQSRLKEEEPRARKAkeqN 445
                 556666667777777777777777777777777777766664443332 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.94
      AAA_21 113 peargirggvsvfslkelsvsepndlqfgkaltdi 147
                 ++ + +r ++++  lk+++++ ++d+++g    +i
  CCE28731.1 709 SKLDQARRLKQDLDLKNHEIKLAQDQISGNSSSSI 743
                 45667777888888888888888888877665555 PP

  == domain 4  score: 18.7 bits;  conditional E-value: 4.9e-07
      AAA_21  233 parelSdGtkrll..alltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltT 296 
                  +++elS G+++l    l+ all+  +  + +++DE+++ L+ + +  + +l+  ++r +g+Q+i+++
  CCE28731.1 1084 SLTELSGGQRSLValSLIMALLQFKPA-PMYILDEVDAALDLSHTQNIGRLI--KTRfKGSQFIVVS 1147
                  67899*******54699999**99999.************************..333368***9986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.2e-07   0.00032      24      46 ..      27      49 ..      15      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.2e-07
      AAA_29 24 atlltGpsGsGKSTllDAiqalL 46
                +  +tG +GsGKS +lDAi ++L
  CCE28731.1 27 FNSITGLNGSGKSNILDAICFVL 49
                5679***************9998 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.8       2.4   6.2e+03       5      15 ..     125     135 ..     124     140 .. 0.59
   2 ?    7.9   0.2     0.001       2.7      22      46 ..     740     764 ..     737     768 .. 0.91
   3 ?    9.7   1.5    0.0003      0.76      11      38 ..     971     998 ..     968    1008 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
       HSBP1   5 avVenlLqqlq 15 
                 + V+nl+q +q
  CCE28731.1 125 QTVQNLFQSVQ 135
                 45666666665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.001
       HSBP1  22 sdqilsriDdMssriDdLEksiadl 46 
                 s++i+  +++M + i +L+ +i++ 
  CCE28731.1 740 SSSIILEVENMKNSITELQSNITEA 764
                 899*******************986 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0003
       HSBP1  11 LqqlqdkFqtmsdqilsriDdMssriDd 38 
                 L +l d+Fq m ++i  ++ +M   ++ 
  CCE28731.1 971 LRNLTDRFQGMKKKINPKVMNMIDSVEK 998
                 899*******************766654 PP

>> HECW1_helix  Helical box domain of E3 ubiquitin-protein ligase HECW1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.012        30      26      59 ..     476     509 ..     469     510 .. 0.88
   2 ?    3.9   0.3     0.023        59      33      51 ..    1000    1018 ..     994    1020 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.012
  HECW1_helix  26 AlrvynknsilkhmvskirrdpekferYqhnrdl 59 
                    ++y++ s l++ v   r+d+ k +r   n d+
   CCE28731.1 476 EEQMYKQESQLQQTVRTLRQDSDKLKRQVANIDF 509
                  569*********************9998888775 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.023
  HECW1_helix   33 nsilkhmvskirrdpekfe 51  
                      lkhm++ + rd +k e
   CCE28731.1 1000 EMTLKHMIKTVIRDKRKIE 1018
                   568***********99987 PP

>> DUF4250  Domain of unknown function (DUF4250)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.031        80      28      52 ..     453     477 ..     443     480 .. 0.84
   2 ?    6.6   0.1    0.0029       7.5      19      49 ..     482     512 ..     477     518 .. 0.90
   3 ?   -3.4   0.3       3.9     1e+04      15      39 ..     689     713 ..     688     719 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.031
     DUF4250  28 edldidkeeleekLasigYeYdeeq 52 
                 + l++++e le++L+++g++ d+e+
  CCE28731.1 453 DGLKAQTERLEKELQKLGFQQDQEE 477
                 6788999************998886 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0029
     DUF4250  19 eyssldelcedldidkeeleekLasigYeYd 49 
                 ++s+l++ +++l  d ++l+ + a+i+++Y 
  CCE28731.1 482 QESQLQQTVRTLRQDSDKLKRQVANIDFNYA 512
                 67899*************************7 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.9
     DUF4250  15 kLRDeyssldelcedldidkeelee 39 
                 +LR  ++ l ++ ++++ +k++l +
  CCE28731.1 689 QLREAENALRDIQAKIHQEKSKLDQ 713
                 7999999999999999999988854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2459  (0.137152); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        81  (0.00451782); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 2.32u 0.35s 00:00:02.67 Elapsed: 00:00:00.64
# Mc/sec: 5567.01
//
Query:       CCE28732.1  [L=1223]
Description: uncharacterized protein CPUR_02420 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-17   62.9   0.0    8.6e-17   60.8   0.0    2.3  1  INCENP_ARK-bind  Inner centromere protein, ARK binding region


Domain annotation for each model (and alignments):
>> INCENP_ARK-bind  Inner centromere protein, ARK binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   4.8e-21   8.6e-17       4      55 .]    1113    1168 ..    1110    1168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 4.8e-21
  INCENP_ARK-bind    4 sDdedddede....prkkipsWAqspeLrqaLikqepiDpdeiFGpikplnleeiF 55  
                       +D e  +e+e    ++k+++ WA+sp+Lr aL++qe++Dp++iFGp++pl +ee+F
       CCE28732.1 1113 TDPEGGEEEEeeksHKKAVACWANSPALRMALVRQETMDPSQIFGPPAPLIMEEVF 1168
                       55555555555567*****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2899  (0.161693); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                       241  (0.0134419); expected 17.9 (0.001)
Passed Fwd filter:                        71  (0.00396006); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.80u 0.41s 00:00:02.21 Elapsed: 00:00:00.59
# Mc/sec: 6294.82
//
Query:       CCE28733.1  [L=344]
Description: uncharacterized protein CPUR_02421 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-18   65.7   0.0    6.4e-18   65.1   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    1.6e-12   48.0   0.0    4.6e-12   46.5   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    1.4e-09   38.5   0.0    3.3e-09   37.3   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    3.8e-06   27.5   0.0    2.4e-05   25.0   0.0    2.2  1  Methyltransf_12  Methyltransferase domain
    0.00017   21.4   0.0     0.0034   17.2   0.0    2.1  2  Methyltransf_31  Methyltransferase domain
    0.00038   20.2   0.0    0.00057   19.7   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
    0.00059   20.0   0.1      0.028   14.5   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
     0.0054   16.3   0.0      0.011   15.3   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0076   16.0   0.0      0.012   15.3   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
     0.0084   15.5   0.0      0.013   14.9   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
  ------ inclusion threshold ------
      0.043   13.3   0.0      0.074   12.5   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
      0.043   13.1   0.0      0.069   12.4   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
      0.073   12.4   0.0       0.94    8.8   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
       0.22   11.2   0.0       0.34   10.6   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0     5e-21   6.4e-18      21     160 ..     112     264 ..      89     268 .. 0.71

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 5e-21
  Methyltransf_23  21 ragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.eaaepqgkfdlIvlrevlehvpdppellrqiatll 109
                      ++++  rvLd+G+GtGi++ ++++++   sv+g Dlsp + +++  +++ +++  d+  e++ ++++fd+I++r   + ++d+++l++ +++++
       CCE28733.1 112 EKDKihRVLDVGTGTGIWAIEFADQFPnaSVIGTDLSPCQPQWI--PPNVRFEIDDAGlEWTWDANYFDFIHMRLIYGGIEDWTRLFKEAFRCC 203
                      333345*******************87779************98..44444444433336667999**************************** PP

  Methyltransf_23 110 kpgGylllseplasl........kedrllldwlylvpagrhi..sffsarslkelleeaGl 160
                      +pgG+++  e +++          e  l+   ++ ++a++++   ff ++  ++++ eaG+
       CCE28733.1 204 APGGWVESVEGDVEFcsddgttkLEPILASFGELFREAEKVLnrPFFLRDVQRQAFDEAGF 264
                      ********99555544444444211111111233444433334566666666666666666 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   3.6e-15   4.6e-12       1      97 []     119     207 ..     119     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 3.6e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+GtG +++++a+++++a+v+g+D+s+ + + +        +nv+f+  da  ++  +++ fD+++++  l +   ed+ +++ke++r++
       CCE28733.1 119 VLDVGTGTGIWAIEFADQFPNASVIGTDLSPCQPQWIP-------PNVRFEIDDAgLEWTWDANYFDFIHMR--LIYGGIEDWTRLFKEAFRCC 203
                      9******************99**********9987653.......5789***999999*************6..7788889************* PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28733.1 204 APGG 207
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   2.6e-12   3.3e-09       1      94 [.     120     209 ..     120     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2.6e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+GtG+ a ++a+++  a+v+g+Dls+ + ++   +       v+f   da  +     n+fD++ ++     +ed+ +++ke+ R++ pg
       CCE28733.1 120 LDVGTGTGIWAIEFADQFpnASVIGTDLSPCQPQWIPPN-------VRFEIDDAGlEWTWDANYFDFIHMRLIYGGIEDWTRLFKEAFRCCAPG 206
                      8**************9999*************9888333.......55555555534689********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28733.1 207 GWV 209
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.8e-08   2.4e-05       1      99 []     120     209 ..     120     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.8e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirevldnirk 91 
                      L++G+GtG  + ++++++p+++++g+D+sp +         ++++  n ++e+++  l+        ++fD +++      ++d+ ++++++ +
       CCE28733.1 120 LDVGTGTGIWAIEFADQFPNASVIGTDLSPCQP--------QWIP-PNVRFEIDDAGLEW---TwdaNYFDFIHMRLIYGGIEDWTRLFKEAFR 201
                      8*****************************999........6665.33334444333333...23458************************** PP

  Methyltransf_12  92 lLkpgGrl 99 
                      +++pgG++
       CCE28733.1 202 CCAPGGWV 209
                      ******85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.6e-06    0.0034       5      38 ..     117     149 ..     113     151 .. 0.90
   2 ?    2.0   0.0      0.13   1.7e+02      55     107 ..     158     209 ..     152     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.6e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+GtG  ++e+a   +p+a v+G D s+
       CCE28733.1 117 HRVLDVGTGTGIWAIEFA-DQFPNASVIGTDLSP 149
                      68****************.669*********987 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.13
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      nv+Fe+ d+       +  + fD+i+ + +   + d    ++e++r   pgg +
       CCE28733.1 158 NVRFEIDDAGLeWT--WDANYFDFIHMRLIYGGIEDWTRLFKEAFRCCAPGGWV 209
                      89999999998444..8889*******999999999999999999999999866 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.4e-07   0.00057      12      83 ..      82     152 ..      73     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.4e-07
  Methyltransf_16  12 dtgesigrkvWdaavvlvkylekklakelganelsklsvlELGsGtGlvGlavaellpeakviltDleelle 83 
                       +  +++r+v  +  +l+  +  +l++  + ++ +  +vl++G GtG+  + +a + p+a+vi tDl+  ++
       CCE28733.1  82 VELSGVARNVIASHHALTVLFDDQLFQ-APLEKDKIHRVLDVGTGTGIWAIEFADQFPNASVIGTDLSPCQP 152
                      455688888888888888888877766.567888999******************************98654 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.2e-05     0.028      21      65 ..     115     161 ..      95     174 .. 0.84
   2 ?    3.1   0.0     0.069        88      29      38 ..     202     211 ..     200     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.2e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEE CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvtt 65 
                 + ++v+D+g ++G w+   + ++ + + v++ Dl p++p    p+v++
  CCE28733.1 115 KIHRVLDVGTGTGIWAIEFADQFPN-ASVIGTDLSPCQPQwipPNVRF 161
                 6799***********9999999875.9**********98877888887 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.069
                 T-TTSHHHHH CS
        FtsJ  29 gaaPGgwsqv 38 
                 ++aPGgw + 
  CCE28733.1 202 CCAPGGWVES 211
                 9******986 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   8.8e-06     0.011      24      63 ..     108     147 ..     102     150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.8e-06
                 HHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  24 letlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                    l+k++ ++vlD+G+G+G+ ++++a++ p+a+v  +d 
  CCE28733.1 108 QAPLEKDKIHRVLDVGTGTGIWAIEFADQFPNASVIGTDL 147
                 55688888899**********************9998886 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.7e-06     0.012      25      59 ..     115     149 ..     104     164 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.7e-06
      DUF938  25 ttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 + +rvL++++GtG  A+ fA ++pn+  + +d  +
  CCE28733.1 115 KIHRVLDVGTGTGIWAIEFADQFPNASVIGTDLSP 149
                 4469***********************99999765 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.9e-06     0.013     162     194 ..     116     149 ..      95     161 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.9e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtG+Gi ai  a ++  ++v+++D+ +
  CCE28733.1 116 IHRVLDVGTGTGIWAIEfADQFPNASVIGTDLSP 149
                 359*************7477999********987 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.8e-05     0.074       5      33 ..     119     147 ..     115     151 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.8e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G G + ++ A ++P+ +++G ++
      CCE28733.1 119 VLDVGTGTGIWAIEFADQFPNASVIGTDL 147
                     89************************876 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.4e-05     0.069      61      95 ..     114     148 ..      51     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.4e-05
                     GG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  61 eglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                      ++++++DvG GtG  a + + ++P+ +vi  Dl+
      CCE28733.1 114 DKIHRVLDVGTGTGIWAIEFADQFPNASVIGTDLS 148
                     57999************************999985 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00073      0.94      49     153 ..     117     213 ..     104     220 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00073
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEE.EE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinief.lqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                      ++vlDv +Gtg +a++++d+   +  v++ D+++   +     +      n++f +   + e   + + fD++ +      + D ++ +kea+r
       CCE28733.1 117 HRVLDVGTGTGIWAIEFADQFP-NASVIGTDLSPCQPQW----IP----PNVRFeIDDAGLEWTWDANYFDFIHMRLIYGGIEDWTRLFKEAFR 201
                      579***************9985.4578889988753222....22....244442334566777777777777777777777777888888888 PP

                      HEEEEEEEEEEE CS
  Ubie_methyltran 142 vlkpGGrlvvle 153
                         pGG +  +e
       CCE28733.1 202 CCAPGGWVESVE 213
                      888887776665 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00027      0.34      70     103 ..     112     144 ..      85     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
                 T--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  70 elkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 e +k  rvL+vG+G+G+ +  +a  + +   v++
  CCE28733.1 112 EKDKIHRVLDVGTGTGIWAIEFADQFPNAS-VIG 144
                 456789************999988776555.655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2470.98
//
Query:       CCE28734.1  [L=691]
Description: probable dead-box protein precursor CYT-19 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-43  147.2   0.2    5.9e-43  146.7   0.2    1.2  1  DEAD           DEAD/DEAH box helicase
    1.6e-21   76.7   0.2    1.2e-20   73.9   0.1    2.2  2  Helicase_C     Helicase conserved C-terminal domain
     0.0051   16.0   0.0     0.0085   15.3   0.0    1.2  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.025   14.6   0.0    1.3  1  ResIII         Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.7   0.2   1.3e-46   5.9e-43       1     176 []     115     302 ..     115     302 .. 0.92

  Alignments for each domain:
  == domain 1  score: 146.7 bits;  conditional E-value: 1.3e-46
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet............kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaa 87 
                 t++Q+++i+ +l+g d++++a+TG+GKT afl+p+lq+++++             +++  + ++++PtreLaeq++++++++  +++l v++ +gg+++
  CCE28734.1 115 TPVQSKTINPALKGSDIVAQAKTGTGKTIAFLLPLLQRMITEdpdlaskkasrtARSDDVRGIVLSPTRELAEQIAEEARRLVRHTGLVVQSAVGGTQK 213
                 79*************************************9889***99999988788889*************************************** PP

                 HHHHHHHH.TTCSEEEEEHHHHHHHH..HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxx.xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  88 rdqlskld.ngvdivvgtpgrlddll..stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 ++ l++ + +g++++v+tpgrl+dll   +  ++  ++  lVlDEadr+ld gf+++++ i++ lp+ +++    rq++++SAT+pkdv kl
  CCE28734.1 214 SQMLRQTQrQGCHLLVATPGRLLDLLqdPRSGIEAPNLAALVLDEADRMLDVGFEKELDDIISVLPKPSQKV---RQTMLVSATIPKDVIKL 302
                 ******97466***************654566899******************************8665554...46*********999875 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.27   1.2e+03      18      73 ..     175     231 ..     162     232 .. 0.74
   2 !   73.9   0.1   2.7e-24   1.2e-20      17     110 ..     366     465 ..     351     466 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.27
                 EEEEEESSHHHHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  18 kilifvntidrlekvklllekk...gikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 + ++ ++t++ +e  ++ +e +     + +v+++     ++ ++l+q +++ +++L+at
  CCE28734.1 175 RGIVLSPTRELAE--QIAEEARrlvRHTGLVVQSAVGGTQKSQMLRQTQRQGCHLLVAT 231
                 5678888888776..33333334456777788888999999999999999999999998 PP

  == domain 2  score: 73.9 bits;  conditional E-value: 2.7e-24
                 SEEEEEESSHHHHHH......HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSS CS
  Helicase_C  17 gkilifvntidrlek......vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgR 109
                  k++++ nt+   e        +  lek +i +  ++++l+q  r ++ e+f++ +s vL ++dv +rG+d+p+v++Vi++d pr+ +syi+r GRtgR
  CCE28734.1 366 FKAIVYFNTTALTELagemgfHRRRLEKMKIPSFSIQSQLSQMARTKAAERFRNTKSGVLFSSDVTARGMDFPNVTHVIQVDTPRDRESYIHRLGRTGR 464
                 689999999995544334344222367779************************9999***************************************** PP

                 T CS
  Helicase_C 110 a 110
                  
  CCE28734.1 465 Q 465
                 6 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.9e-06    0.0085      84     153 ..     400     467 ..     389     472 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.9e-06
  ERCC3_RAD25_C  84 yiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqeaqrlGriLrakk 153
                     i+ + s+  r+k  ++f+++ k  ++f s v+   +D+P+ + +iq+++    r     rlGr  r  k
     CCE28734.1 400 SIQSQLSQMARTKAAERFRNT-KSGVLFSSDVTARGMDFPNVTHVIQVDTPR-DRESYIHRLGRTGRQNK 467
                    57888999**********987.6789**********************9864.57788899999888655 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.5e-06     0.025      26     143 ..     130     261 ..      95     296 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.5e-06
                 EEEEEESTTSTHHHHH.HHHHHHH-S...................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.........-SEE CS
      ResIII  26 rglikmaTGtGKTlva.aklierllkkgkee..............kflflvprkslleqtleefkkflseaykeigkkvsgdkkka..kekdstnkkil 107
                  ++ ++ TGtGKT+   + l +r+ ++ +                + ++l p+++l eq  ee +++   +   ++  v g +k++  ++ +++ +++l
  CCE28734.1 130 DIVAQAKTGTGKTIAFlLPLLQRMITEDPDLaskkasrtarsddvRGIVLSPTRELAEQIAEEARRLVRHTGLVVQSAVGGTQKSQmlRQTQRQGCHLL 228
                 678899********99788888888876544899999*****************************999998888888888888888888999999999 PP

                 EEEHHHHHHTH........HHHTTT-S..EEEEETGGG CS
      ResIII 108 vttiqsldadseeeeeeseellrdrfd..viiiDEaHr 143
                 v+t  +l   +     ++ + + ++ +   ++ DEa r
  CCE28734.1 229 VATPGRLLDLL-----QDPRSGIEAPNlaALVLDEADR 261
                 99999888877.....3333333333344666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5060.44
//
Query:       CCE28735.1  [L=343]
Description: probable peroxisome biogenesis factor 7 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-19   68.1  14.8    0.00021   22.0   0.0    6.7  6  WD40         WD domain, G-beta repeat
    0.00014   22.1   0.0        0.4   11.0   0.0    4.0  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.079   12.0   0.0       0.57    9.2   0.0    2.1  2  Itfg2        Integrin-alpha FG-GAP repeat-containing protein 


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00029       1.7      14      38 .]      66      91 ..      53      91 .. 0.67
   2 !   14.6   0.4   7.8e-06     0.047      15      38 .]     111     135 ..      98     135 .. 0.66
   3 !    7.1   0.0    0.0018        11      15      38 .]     153     177 ..     137     177 .. 0.72
   4 !    6.5   0.0    0.0027        16      12      36 ..     205     232 ..     186     234 .. 0.73
   5 !   22.0   0.0   3.5e-08   0.00021       1      37 [.     240     278 ..     240     279 .. 0.85
   6 !   12.5   1.1   3.7e-05      0.22       6      38 .]     299     334 ..     294     334 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00029
                EEEEEETTSSE........EEEEETTSEEEEEE CS
        WD40 14 tslafspdgaw........lasGsdDgtvriWd 38
                ++l      aw        l++++ Dg+v+++d
  CCE28735.1 66 YDL------AWseinekqlLVACG-DGSVKLFD 91
                556......33444444658899*.******98 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 7.8e-06
                 EEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  15 slafspdgaw.lasGsdDgtvriWd 38 
                 s+++sp  +  ++s+s+Dgt++iW+
  CCE28735.1 111 SVCWSPVTKDsFISSSWDGTIKIWS 135
                 454333333336799*********5 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0018
                 EEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40  15 slafspdgawlasG.sdDgtvriWd 38 
                 s +f+p+++ l+s+ s D ++r++d
  CCE28735.1 153 SASFCPSNPALISAvSSDSHLRLFD 177
                 44599999999987755******98 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0027
                 S..EEEEEEETTSSEE.EEEETTSEEEE CS
        WD40  12 s..vtslafspdgawl.asGsdDgtvri 36 
                 +  v   +++++++ + a+G+ D+ +r 
  CCE28735.1 205 PaeVLTHDWNKYNQTViATGGVDRIIRT 232
                 3446677788888886269*******95 PP

  == domain 5  score: 22.0 bits;  conditional E-value: 3.5e-08
                 TEEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgaw.lasGsdDgtvriW 37 
                 g++l +  GH   ++ la+sp+ +  l+sGs+D tvr+W
  CCE28735.1 240 GDPLSVMPGHeYAIRRLAWSPHASDvLISGSYDMTVRLW 278
                 57899999**555****99999999446*********** PP

  == domain 6  score: 12.5 bits;  conditional E-value: 3.7e-05
                 EEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 
                 +   H  +vt+++      g w+as ++D+ v +Wd
  CCE28735.1 299 VMNRHtEFVTGVDwcLFGAGGWVASVGWDQRVLLWD 334
                 55568666888865557777779999*********9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   6.7e-05       0.4      37      67 ..      61      92 ..      40     114 .. 0.77
   2 ?    1.8   0.0     0.048   2.9e+02      36      80 ..     104     149 ..      96     154 .. 0.78
   3 ?    3.9   0.0     0.011        67      36      48 ..     248     260 ..     154     285 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.7e-05
  ANAPC4_WD40 37 edsevrsLaWkp.dgklLavaysdgevrllda 67
                 ++    +LaW++ ++k L va+ dg+v+l+d 
   CCE28735.1 61 TNDALYDLAWSEiNEKQLLVACGDGSVKLFDL 92
                 45566789**85499**************996 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.048
  ANAPC4_WD40  36 kedsevrsLaWkpdgk.lLavaysdgevrlldaesgkvvhslsvks 80 
                  ++++e  s++W+p  k  +  +  dg++++ +   ++ +++l+++s
   CCE28735.1 104 EHKRETFSVCWSPVTKdSFISSSWDGTIKIWSPTRAHSLKTLPIGS 149
                  6677778999998654256677789*******99999999988876 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.011
  ANAPC4_WD40  36 kedsevrsLaWkp 48 
                  +++  +r LaW+p
   CCE28735.1 248 GHEYAIRRLAWSP 260
                  3344455555554 PP

>> Itfg2  Integrin-alpha FG-GAP repeat-containing protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.056   3.3e+02      30      50 ..      75      95 ..      70     123 .. 0.70
   2 ?    9.2   0.0   9.6e-05      0.57      18     109 ..     149     235 ..     135     247 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.056
       Itfg2 30 knvvvalsaeGwchlfdlakk 50
                 + +++ +++G ++lfdl  +
  CCE28735.1 75 EKQLLVACGDGSVKLFDLGVD 95
                45567789*********9333 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 9.6e-05
       Itfg2  18 tcvavgdvcnkgknvvvalsaeGwchlfdlakkadaseevskelekkeelkpvfsqhlpantkvvliaDidgDgkvElvvgytDrvvrayrW 109
                 +c+  +  c ++  ++ a+s++  + lfdl + + a+++    ++ + + ++++    pa    vl +D ++ +++ + +g  Dr++r++  
  CCE28735.1 149 SCTYSASFCPSNPALISAVSSDSHLRLFDLRTPSAATHH--LVSNIPVHGAATYPGATPA---EVLTHDWNKYNQTVIATGGVDRIIRTFDI 235
                 69999999**********************555555444..5566778888999988887...5899**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2465.06
//
Query:       CCE28736.1  [L=448]
Description: uncharacterized protein CPUR_02424 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-36  126.9   0.0    1.6e-36  126.4   0.0    1.2  1  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
    4.3e-09   36.3   7.7      9e-09   35.3   7.7    1.6  1  zf-GRF          GRF zinc finger
  ------ inclusion threshold ------
      0.024   15.3   0.7       0.22   12.2   0.1    2.6  3  DnaI_N          Primosomal protein DnaI N-terminus


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.0   2.7e-40   1.6e-36       2     196 .]     135     370 ..     134     370 .. 0.88

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 2.7e-40
  2OG-FeII_Oxy_2   2 lllipnflsaeeaaellrell.eegpfrqptilg.gkrvsvqqt.ll..gplgwatdg.pgyrysekesvdakplspfpeallrlverlvkaag. 89 
                     +++i+nfl a ea+ell+ell e+  f ++t++   + vs+ +t ++  ++ ++ t++  +y y++ + +d ++++p ++a++  v+++v+++  
      CCE28736.1 135 CTIIHNFLRADEANELLKELLhESKSFEKNTFKLfDNVVSSPHTsSFfvESSEELTAQkSEYYYNGSQLTDVRRITPQLAAVKPKVQDAVNKQIq 229
                     799******************6666678888887555566665422345788888877679******************************988* PP

  2OG-FeII_Oxy_2  90 .................pegwspnaalvnfYrdga.riglHqDkees.aleapivSlSLGasatfrfg..................kesreeeii 147
                                      p +w pn+a+vn+Y+  + ++g+H+D+ ++ +++a+i S+SLG +++fr++                   + ++e +i
      CCE28736.1 230 hrietrypsgkklryqsPNPWIPNSAFVNCYDGAQqNVGWHSDQLTYlGPRAVIGSISLGVAREFRVRrvvpkdgggggggdtsteVDADAEGQI 324
                     ********************************9999*********888*******************9899999999998877644333566*** PP

  2OG-FeII_Oxy_2 148 ailLesGdllvmggesrkay.Hgvprikk.dtapeleleelrtrRinlTfR 196
                     +i+L++++llvm++e+++++ H+v++    d++p       +++Rin+T+R
      CCE28736.1 325 SIHLPHNSLLVMHAEMQEEWkHCVTPAPSiDPHPI-----AGNKRINITYR 370
                     ***************************99667777.....9*********9 PP

>> zf-GRF  GRF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   7.7   1.5e-12     9e-09       2      43 ..     383     427 ..     382     429 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.5e-12
      zf-GRF   2 lCkcgrlavlltvrktgpNkGRkFYkCpkgke...kqCgFFkWad 43 
                  C c  ++v+++v+k++ N G+ F+ C +g+    + C FF+Wa+
  CCE28736.1 383 RCACKVPCVMRVVQKKRDNFGKYFWMCHAGNVpgkQGCSFFQWAE 427
                 7**************************9998788799******97 PP

>> DnaI_N  Primosomal protein DnaI N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.1   6.3e+03      59      83 ..      65      90 ..      59      94 .. 0.75
   2 ?   12.2   0.1   3.7e-05      0.22       5      51 ..     148     195 ..     145     200 .. 0.87
   3 ?   -0.3   0.0      0.29   1.7e+03      69      94 .]     342     369 ..     333     369 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
                HHHHS-SS-TT.TTS--SSTTEEEEE CS
      DnaI_N 59 eyveekkkcea.eecknlakGYePkL 83
                e ++  kkc++ e+++++  GY+  L
  CCE28736.1 65 EAIQLGKKCHEqEKKSSIGIGYQQSL 90
                55666788888677778888998766 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.7e-05
                 TXSXXX.XSXXXHHHHHHHHHHHHHTTXHHHHHHHHHSTTTC-HHHHH CS
      DnaI_N   5 geslkk.llkkrkfekryeklkeevlsdpeVqaFlqehqeelteeaie 51 
                 +e lk+ l ++++fek++ kl+++v+s+p+  +F+ e +eelt ++ e
  CCE28736.1 148 NELLKElLHESKSFEKNTFKLFDNVVSSPHTSSFFVESSEELTAQKSE 195
                 6778886678999******************************98765 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.29
                 T..TTS--SSTTEEEEEEEETTEEEEEE CS
      DnaI_N  69 a..eecknlakGYePkLvlnegsidvsY 94 
                 +  ++c + a+   P+ +  +++i+++Y
  CCE28736.1 342 EewKHCVTPAPSIDPHPIAGNKRINITY 369
                 34567999999999************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3265.51
//
Query:       CCE28737.1  [L=273]
Description: related to riboflavin biosynthesis protein RIB7 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-31  107.5   0.0      9e-31  107.3   0.0    1.1  1  RibD_C    RibD C-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.0     5e-35     9e-31       1     199 [.      33     265 ..      33     266 .. 0.84

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 5e-35
                 -EEEEEEEEETTSBSSCTTSSGCTSS-HHHHHHHHHHHHTSSEEEEEHHHHHHHT--SS--SSCHSCHHHTT.GSS-EEEEEETTS-S-TTSH.....H CS
      RibD_C   1 pyvilklavSlDGklaaaggeskwitgeearadvhelraeadailvGrgtvladnpsltvrwvkkreaeadaearqpvrvVvdstlrvpldak.....v 94 
                 p+v+l++a+SlD  l+ a g +++++g++ +a++h+lr+ + ail+G+ t ladnp l++r+ +++         qp+ +++d +lr++++ +     +
  CCE28737.1  33 PFVTLTFATSLDSSLSLAPGVRTRLSGPGSKAMTHYLRSRHAAILIGVSTLLADNPGLNCRLEGTT--------SQPRPIILDPHLRWTPEPSdqvltL 123
                 89***************************************************************8........99****************99*9984 PP

                 HHSS..S-EEEEESSCSCHHHHHHCC...........E..............SE-HHHHHHHHHHTT--EEEEEETHHHHHHHHH...TTT-SEEEEEE CS
      RibD_C  95 ltdd..aptlvatteeadkekveklk...........v..............rvdlkelleeLkergirsllveGGatLagsllr...aglvDelrlyi 163
                  + +   ++ v+t  ++d+   ++++           v              r+ ++++l++L ++g+ s+++eGGa++++sll+   + lvD ++++i
  CCE28737.1 124 CRAGagLAPFVLTGVRVDDIPPQQVQllhdhggkyvhVpaasptgsgsdarsRFAWEDVLSALLAEGLLSVMIEGGAHVINSLLEpahHALVDAVIVTI 222
                 4443344666766666666666666655588888755277778889999999*******************************9755589********* PP

                 ESCE--TTSBCSSSSST-SS........EEEEEEEEEEETTEEE CS
      RibD_C 164 aPkllGgagktlfdgegfka........lklklvksealgegvv 199
                 aP+ lG  g  +++   +           +l   ++  lge+vv
  CCE28737.1 223 APTWLGR-GGVVVSPNRVHDaegqpcaaARLSGLSWLPLGEDVV 265
                 *******.777777766655566666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       182  (0.0101512); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2127.29
//
Query:       CCE28738.1  [L=352]
Description: related to ribokinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-53  181.3   0.2    1.4e-52  178.9   0.2    1.8  1  PfkB            pfkB family carbohydrate kinase
  ------ inclusion threshold ------
      0.014   15.1   0.1       0.09   12.5   0.0    2.3  2  TPP_enzyme_M    Thiamine pyrophosphate enzyme, central domain
       0.59    8.7   1.9       0.75    8.4   1.9    1.1  1  CCDC14          Coiled-coil domain-containing protein 14
        1.4    8.9   9.4        2.8    7.8   9.4    1.5  1  Tir_receptor_C  Translocated intimin receptor (Tir) C-terminu
        2.5    8.1  11.8        5.2    7.0  11.8    1.5  1  DUF3439         Domain of unknown function (DUF3439)
        3.9    8.0   8.1         23    5.5   7.0    2.4  2  Dmrt1           Double-sex mab3 related transcription factor 


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.9   0.2   4.8e-56   1.4e-52       4     301 ..       9     347 ..       7     348 .. 0.93

  Alignments for each domain:
  == domain 1  score: 178.9 bits;  conditional E-value: 4.8e-56
                 EEEEEEEEEEEEEECSSH..TTSEEEESEEEEEEESHHHHHHHHHHHTT................................-EEEEEEEEESSHHHHHH CS
        PfkB   4 vvviGealidliavsekl..egelvevktveksaGGagaNvAvalarlg................................advafigavGdDnfGefl 68 
                 + ++G++++dl+ ++  +  +ge+ + ++++ s+GG+gaN+Ava a+l                                 a+v ++ga+G+D++G+ l
  CCE28738.1   9 ITILGSLNMDLVSYVPHHplPGETLTSSSFNTSPGGKGANQAVACAKLSrsrpsttttttttatttststtistdpscppsAQVNMLGAIGNDTHGQTL 107
                 7789*********************************************************************************************** PP

                 HHHHHHTTEEETTEEEESSSEEEEEEEEETTT.SEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEES.......EECTTSHHHHHHHHHHHHHHTT CS
        PfkB  69 leelkkegvdtdyvkidedtrtglalivvded.gertivfnrgaaadltkeeleededlleeadllyisg.......llsselpeavleelaeaakngg 159
                 l++l++ gv+t++++  ++ +tglali+vde  g++ i+  ++a+++l++e++  + + ++ a+     +       +l+ e+p +++ ++   ak +g
  CCE28738.1 108 LTSLHSYGVNTNGIRTLNNLSTGLALIIVDEPsGQNRIILSPEANHALRPEDF-TSTASFHDAT-----SgllpdllILQLEIPLETVLQALRTAKMHG 200
                 **************************************************755.3333333333.....3455558*********************** PP

                 EEEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHHHHHTSCT...HSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGT CS
        PfkB 160 tfdpnlldplgaqfkeallellaladllkpneeElealtgekl...edieealaalhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDtt 255
                   +p+ll+p++aq     +e+ ++   l++ne+E+  l+g+     e+ e ++ ++  ++++g+++vv+tlG +G++++ +dg      + k +vvDtt
  CCE28738.1 201 --VPVLLNPAPAQ--IIPEEAYEGLAHLIVNETEACVLSGRGEdelETAEGLATVADGFLERGVQNVVITLGGRGVYYAARDGPRALVEALKADVVDTT 295
                 ..*********86..344566678889*************999999**********************************888887777799******* PP

                 THHHHHHHHHHHHHHT......THHHHHHHHHHHHHHHHHHTSSSSSTCSCC CS
        PfkB 256 GAGDsfvggflaalle......gksleealrfanavAalvvqkkgaiaslpt 301
                 +AGD+fvg+++ a ++      g ++  a+r+an+++a++v++kga+ s+p+
  CCE28738.1 296 AAGDTFVGSYALAVVQaacerdGFDIDAAIRAANRASAITVSRKGAQVSIPW 347
                 ***********************************************99986 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.4   1.2e+03      31      55 ..     192     216 ..     187     245 .. 0.82
   2 ?   12.5   0.0     3e-05      0.09      12      54 ..     261     303 ..     258     316 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.4
                   HHHHHHHHT-EEEEEGGGTTSS-TT CS
  TPP_enzyme_M  31 lrelaeklgiPvvttlmgkgviped 55 
                   + + a+ +g+Pv+  ++ + +ipe+
    CCE28738.1 192 ALRTAKMHGVPVLLNPAPAQIIPEE 216
                   5677899999999999999999976 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3e-05
                   SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-T CS
  TPP_enzyme_M  12 krpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipe 54 
                   +++vi +Gg+  +  a++  r+l+e+l++ vv+t ++ +++  
    CCE28738.1 261 QNVVITLGGRGVYYAARDGPRALVEALKADVVDTTAAGDTFVG 303
                   689*******************************999888765 PP

>> CCDC14  Coiled-coil domain-containing protein 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.9   0.00025      0.75     143     223 ..      49     129 ..      35     156 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00025
      CCDC14 143 pavpchtvseses.qaatasnyrlptstpvlspqrsanplvvqsevqtdsenqvasqsgavsvlatasvsrasvsalpgvqp 223
                 +av+c   s s    ++t+ +   +tst++     +++p+++q +++    n++  q+  +s+ +   v ++ + +l ++ +
  CCE28738.1  49 QAVACAKLSRSRPsTTTTTTTTATTTSTSTTISTDPSCPPSAQVNMLGAIGNDTHGQTLLTSLHSY-GVNTNGIRTLNNLST 129
                 4566666666654277788889999****************************9999999998876.666675555555544 PP

>> Tir_receptor_C  Translocated intimin receptor (Tir) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   9.4   0.00095       2.8      44      96 ..      49     102 ..      36     130 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00095
  Tir_receptor_C  44 agvtaalhrrnqPve.qttttttttvttsttvenktanntsaqGnadtsgaeet 96 
                      +v++a   r +P    ttttt+tt++tstt+   ++   saq n   +  ++t
      CCE28738.1  49 QAVACAKLSRSRPSTtTTTTTTATTTSTSTTISTDPSCPPSAQVNMLGAIGNDT 102
                     345544444555555055555556777889999999999999987655554444 PP

>> DUF3439  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  11.8    0.0018       5.2      45      67 ..      60      82 ..      31      95 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0018
     DUF3439 45 cpttttttttttttmpttttlpt 67
                 p+tttttttt+tt  t+tt+ t
  CCE28738.1 60 RPSTTTTTTTTATTTSTSTTIST 82
                48888888888888889888877 PP

>> Dmrt1  Double-sex mab3 related transcription factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   7.0    0.0076        23      27      63 ..      53      87 ..      44      93 .. 0.72
   2 ?    0.2   0.0      0.35     1e+03       3      39 ..     120     157 ..     120     172 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0076
       Dmrt1 27 clfsessssaqptspssatssaategrsvisdiPsvt 63
                c   + s+s  +t++ ++t+++ t++ ++is  Ps +
  CCE28738.1 53 C--AKLSRSRPSTTTTTTTTATTTSTSTTISTDPSCP 87
                3..4456677777778889999999999999999975 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.35
       Dmrt1   3 GIshPipLpsaaellVKreangd.sclfsessssaqpt 39 
                 GI ++ +L+++  l++  e++g+   ++s +   a  +
  CCE28738.1 120 GIRTLNNLSTGLALIIVDEPSGQnRIILSPEANHALRP 157
                 8999999***9999999999999777777665554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2814.83
//
Query:       CCE28739.1  [L=575]
Description: uncharacterized protein CPUR_02427 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4171.35
//
Query:       CCE28740.1  [L=333]
Description: uncharacterized protein CPUR_02428 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-10   40.4   0.0    3.6e-10   39.6   0.0    1.3  1  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0     2e-14   3.6e-10       4      78 ..      17      90 ..      14     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2e-14
                HHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE.TT CS
      UQ_con  4 kelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd.ks 78
                +e++ l++  p+g+ ++l+   +   w+++++  +d+pY+ +v +++++fp++YP  pP v f t+ifHP v+  +
  CCE28740.1 17 SEFTGLRQACPEGVFVTLTPG-DPSLWSAVLFV-RDGPYAPAVLRFQISFPDTYPKLPPLVLFSTDIFHPLVSpLT 90
                566777777777887887775.7889******9.9************************************98555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:01.08
# Mc/sec: 928.69
//
Query:       CCE28741.1  [L=218]
Description: uncharacterized protein CPUR_02429 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-30  104.4  14.5    4.8e-29  101.5  14.5    2.1  1  Ccdc124          Coiled-coil domain-containing protein 124 /O
  ------ inclusion threshold ------
       0.64   10.9   0.1       0.64   10.9   0.1    3.2  2  DUF3235          Protein of unknown function (DUF3235)
        8.2    6.9  10.6         18    5.8  10.6    1.6  1  Phage_holin_6_1  Bacteriophage holin of superfamily 6 (Holin_


Domain annotation for each model (and alignments):
>> Ccdc124  Coiled-coil domain-containing protein 124 /Oxs1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5  14.5   8.1e-33   4.8e-29       2     129 .]      52     189 ..      10     189 .. 0.70

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 8.1e-33
     Ccdc124   2 raqiekreeeekkkeekek..kekkkakkkeveekeleenvnrlsrae.enaee..eekveAsgideaiaaLsv..kk.eekldrhpekrlkAaYkafe 92 
                 +++++k++e+++kk+ek++  ke++++     e k+ +  v + +  + +++e+   ++ +Asgid+a++aL++  ++ ++kld+hpe+r+ Aa++++e
  CCE28741.1  52 ESEAAKKAEAARKKAEKDAllKEEEASLGGRAEPKKSKAPVKKSRGLDlSQLEGdsPSALSASGIDNALDALTLatGAdDSKLDKHPERRFAAAFAKYE 150
                 3344444444444444443332222222222233333344445445554444444456666*************753569******************* PP

     Ccdc124  93 eeeLprlkeenp..gLrlsQlkqllkkewkkspeNPlNq 129
                 e++L+++k++ +  gLrl+Q kq+++ke++kspeNP+Nq
  CCE28741.1 151 ERRLAEMKADGSgvGLRLDQRKQRIRKEFDKSPENPFNQ 189
                 ***********9889***********************9 PP

>> DUF3235  Protein of unknown function (DUF3235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.9  19.0         3   1.8e+04      15      37 ..      18      40 ..       7      78 .. 0.57
   2 ?   10.9   0.1   0.00011      0.64      42      88 ..     167     213 ..     134     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: -9.9 bits;  conditional E-value: 3
                .S-HHHHHHHHHHHHHHHHHT-- CS
     DUF3235 15 qapApvaaaaataqkavadlaat 37
                +a A +++aaa+ +k++ad a++
  CCE28741.1 18 KADAAAQKAAASDAKQAADEAEQ 40
                23333333333333333333333 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHTTT----HHHHHHHHCTTT-HHHHHHHTHHHHH CS
     DUF3235  42 avDavydalkdalakaGiavpaqvtdfYkAnrsdfnafynanrgtid 88 
                  +D+  + +++++ k   +  +qvt +Y+A r+d++++ + ++++i+
  CCE28741.1 167 RLDQRKQRIRKEFDKSPENPFNQVTVAYNATRDDLSQVKAHEAAKIE 213
                 5666677777777777777789***************9999888886 PP

>> Phage_holin_6_1  Bacteriophage holin of superfamily 6 (Holin_LLH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  10.6     0.003        18      29      78 ..      15      65 ..       6      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.003
  Phage_holin_6_1 29 klkkqgekakkiaei.aknaVkaveqvakedakgeeKkeeAleklkellke 78
                     +++k + +a+k a+  ak+a   +eq+ k+++ ++ K +eA +k+++  k+
       CCE28741.1 15 NARKADAAAQKAAASdAKQAADEAEQWQKGAKSNAKKESEAAKKAEAARKK 65
                     778888999999999***************888888889999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1991  (0.111049); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 1434.17
//
Query:       CCE28742.1  [L=528]
Description: related to E.coli tetracycline resistance protein TCR1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-35  120.5  13.1    7.6e-35  120.5  13.1    1.8  1  MFS_1       Major Facilitator Superfamily
    2.3e-09   36.7   1.5    2.3e-09   36.7   1.5    2.0  2  Sugar_tr    Sugar (and other) transporter
    0.00042   19.3   9.7      0.031   13.1   4.2    2.8  2  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
      0.092   11.1   1.4       0.14   10.5   1.4    1.2  1  TRI12       Fungal trichothecene efflux pump (TRI12)
        3.7    5.8   6.9        1.5    7.1   1.8    2.2  2  MFS_3       Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5  13.1   2.1e-38   7.6e-35      15     353 .]       3     467 ..       1     467 [. 0.81

  Alignments for each domain:
  == domain 1  score: 120.5 bits;  conditional E-value: 2.1e-38
       MFS_1  15 lgpalplalaedlgispse......igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpaga 107
                 ++p +  ++ +d++i+ +       +g+++++++l+ +++ + +Grlsd++Gr++vll+gll++a+++l++ fa+sl++ l++r+l Gl  g +  +  
  CCE28742.1   3 IFPYIY-YMIKDFNITDDPsrisvyAGMVTSAFTLAEFATGVMWGRLSDKIGRKPVLLFGLLGTAVSVLVFGFAPSLPVALFARALGGLLNGNIGVLQT 100
                 566666.999****88888888889999***************************************77777989999*************99999999 PP

       MFS_1 108 aliadwfpkeergraigllsagfslGailgpllgglla.sslg...............Wravfyilaivsllafvlfllllpeepperkrkspkeee.. 188
                 +++  ++ ke+++ra+ ++ + + +G+i+gp++gg+la   ++               + ++ ++ a+  l+++v+++l+l e++ ++k  +++ +e  
  CCE28742.1 101 TVAELVTVKEQQPRAYTIMPMVWCIGSIIGPMIGGALArPCISypdlfprgtiwdrfpYLLPNLFSAVTVLFGVVVGFLFLEETHAAKKEHRDVGRElg 199
                 999999999*****************************77777**********9998766667777777777777766777666666666666666699 PP

       MFS_1 189 ..................................................................................kgtgpaplvp....... 198
                                                                                                   +        +       
  CCE28742.1 200 yrllgfvhnvplcrnlgrnvekesllagdrttgyntttsaspspdvleteqalqiypsreasprltpgghpaampatvtpvaAM-------Tgpcelds 291
                 ********************************************************9999999998888877777665555522.......14444455 PP

       MFS_1 199 .awkallkdpvlwillialllfffgfsglltllply.................lqevlglsglllaglllallalvgail.allagrlsdrlgrrrrll 278
                      ++++pv++ ++   +l+ f + ++ +llp++                 +++ +gl+   ++g+++++ +l ++++ ++l++ + +rlg+ r   
  CCE28742.1 292 kEKMVIFTKPVIMNIMSYGILA-FHTITYDQLLPVFlsmekpeagpptklpfkFVDGFGLD-TKTIGAIMSVQGLYSLFSnFMLVTPVTQRLGSLRLFR 388
                 7688889999996333333333.26666999999977777777777777776678888888.577777777777777777777********99855555 PP

       MFS_1 279 lallllllaalglallavt..ssavllllvlvliGf.glgfvfpsllalasdlapp.eeagtasglfntagslggalgp 353
                 +  +  ++++l   ++ +   +  + ++++lv++ +  + +++p  + l++++ap+ e  gt++g++ ++ sl +algp
  CCE28742.1 389 FLAFTYFALYLVTPYVVLLpeDLRMPAIYILVVWKCtYATMAYPNNAILLANSAPRkEVLGTINGIAASTASLCRALGP 467
                 55555555555555555558888888888*******555555898888888888654999*****************98 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   1.5   6.3e-13   2.3e-09      44     161 ..      23     137 ..       2     192 .. 0.87
   2 ?   -4.2   3.8       1.6   5.7e+03     299     400 ..     365     464 ..     343     501 .. 0.61

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 6.3e-13
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                  sv+ g+++s+f + +++++++ g l+d++GRk++ll++ + + ++ ++ ++a+   s+ v +++R l G+  G + vl ++ +  ++ k+   +  ++
  CCE28742.1  23 ISVYAGMVTSAFTLAEFATGVMWGRLSDKIGRKPVLLFGLLGTAVSVLVFGFAP---SLPVALFARALGGLLNGNIGVLQTTVAELVTVKEQQPRAYTI 118
                 57999*************************************************...9****************9999999988888888888888899 PP

                 HHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 143 yqlaitfGilvaaifglgl 161
                   + + +G +++ ++g +l
  CCE28742.1 119 MPMVWCIGSIIGPMIGGAL 137
                 9999999999988887665 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.6
                 HHHHHHHHH.HHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTT.THHHHHHHHHHHH CS
    Sugar_tr 299 vnfvatfva.iflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqs.vRskalaiavavn 395
                    ++ f+   ++  r+G  +l+ + a++++++ ++    + ll++      + ai  ++++ + +a+   p  ++l++  +p + v ++   ia+ + 
  CCE28742.1 365 YSLFSNFMLvTPVTQRLGSLRLFRFLAFTYFALYLVTP-YVVLLPED---LRMPAIYILVVWKCTYATMAYPNNAILLANSAPRKeVLGTINGIAASTA 459
                 44444444424667777777888888888888888886.55555555...4888888888888888888888888888777775324444444444444 PP

                 HHHHH CS
    Sugar_tr 396 wlanf 400
                  l+  
  CCE28742.1 460 SLCRA 464
                 44444 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   4.2   8.6e-06     0.031     263     373 ..      28     137 ..      23     148 .. 0.87
   2 !    8.1   0.2   0.00029         1     224     375 ..     292     475 ..     152     481 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.6e-06
  MFS_1_like 263 GslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfgl 361
                 G+++   ++ae  + ++  +l +k+G   +l+++ll +++  l+ ++  ++ ++l++ +L g+  g + +  +++++ ++ k+ + +   ++ ++ +++
  CCE28742.1  28 GMVTSAFTLAEFATGVMWGRLSDKIGRKPVLLFGLLGTAVSVLVFGFAPSLPVALFARALGGLLNGNIGVLQTTVAELVTVKEQQPRAYTIMPMV-WCI 125
                 56666667777888888899999999999999999999999999999999999999999999999999999999999999999999999999988.999 PP

  MFS_1_like 362 GralGsliGGll 373
                 G+ +G +iGG+l
  CCE28742.1 126 GSIIGPMIGGAL 137
                 999999999987 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00029
  MFS_1_like 224 npeviifllvalilgmswgiienF.........................lflYLkelgasntllGslvalgvvaeip.lfffaeklleklGhvklliia 296
                 + +++if   +++  ms+gi+                             f + +  g  + ++G+++ ++ + ++   f++   ++++lG  +l  + 
  CCE28742.1 292 KEKMVIFTKPVIMNIMSYGILAFHtitydqllpvflsmekpeagpptklPFKFVDGFGLDTKTIGAIMSVQGLYSLFsNFMLVTPVTQRLGSLRLFRFL 390
                 555555555555555666665443777777777777777777777777778999999*************999988626999999******99999765 PP

  MFS_1_like 297 llayilrfllyaii.....enawlvlpievLhgisfgll.waaaveyvskiap.ksleatgqgllsglyfglGralGsliGGllwd 375
                  ++y++ +l+  ++     +    ++ i v   ++++++ +   +   ++ ap k++ +t+ g+ +++  +l ralG  i+Gll+ 
  CCE28742.1 391 AFTYFALYLVTPYVvllpeDLRMPAIYILVVWKCTYATMaYPNNAILLANSAPrKEVLGTINGIAAST-ASLCRALGPTISGLLFS 475
                 5555555555444447885444445666666777777663545555555666626799******9988.89************995 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.4   3.9e-05      0.14      80     170 ..      27     117 ..      14     142 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.9e-05
       TRI12  80 sslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagasplfvgelmsnktkflglli 170
                  +++++ +t+ +  + ++ grl+d++gr+p+++   +   v  +v   a  +   l a +l g+  g  g     v el++ k +     +
  CCE28742.1  27 AGMVTSAFTLAEFATGVMWGRLSDKIGRKPVLLFGLLGTAVSVLVFGFAPSLPVALFARALGGLLNGNIGVLQTTVAELVTVKEQQPRAYT 117
                 56777788888888999*************8887766667889999999999999************************999876554444 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.8   0.00042       1.5      47     162 ..      27     137 ..      16     141 .. 0.70
   2 ?    1.1   0.2     0.028     1e+02     145     170 ..     456     480 ..     382     499 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00042
       MFS_3  47 vAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaaln..dPaWqAsvgelvk.rrdvpaAva 142
                   +v  a tL  f   ++ G l+D++ r+ vll + l  a vsvl+  +a      p++l    +  ++G  ln      q +v elv+ +++ p A +
  CCE28742.1  27 AGMVTSAFTLAEFATGVMWGRLSDKIGRKPVLLFGLLGTA-VSVLVFGFAP---SLPVAL----FARALGGLLNgnIGVLQTTVAELVTvKEQQPRAYT 117
                 5689999999999999999999999999999998865444.4443332221...123333....34444554431145679999999974677899999 PP

       MFS_3 143 LnsvginiaRsvGPAlgGvl 162
                 +  + + i   +GP +gG l
  CCE28742.1 118 IMPMVWCIGSIIGPMIGGAL 137
                 99999999999999999986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.028
       MFS_3 145 svginiaRsvGPAlgGvlvaavGaal 170
                 +    + R+ GP ++G+l ++ G  +
  CCE28742.1 456 ASTASLCRALGPTISGLLFSL-GLQT 480
                 4456789*********99874.5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3593.24
//
Query:       CCE28743.1  [L=125]
Description: uncharacterized protein CPUR_02431 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 982.26
//
Query:       CCE28744.1  [L=208]
Description: uncharacterized protein CPUR_02432 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.019   15.9   3.5      0.074   14.0   0.0    2.1  2  DUF4834   Domain of unknown function (DUF4834)
      0.024   15.3   2.5      0.024   15.3   2.5    2.1  2  Pex14_N   Peroxisomal membrane anchor protein (Pex14p) conser
       0.14   12.2   6.7        2.4    8.2   1.9    2.4  2  PRIMA1    Proline-rich membrane anchor 1
       0.91    9.5   1.8        1.7    8.6   1.8    1.4  1  Syndecan  Syndecan domain


Domain annotation for each model (and alignments):
>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   1.7      0.13   5.8e+02      42      60 ..      10      28 ..       3      41 .. 0.35
   2 ?   14.0   0.0   1.6e-05     0.074       7      81 ..      73     155 ..      72     162 .. 0.50

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.13
     DUF4834 42 aqkqfgnstnsnqqksqsr 60
                a++q+++s++++q +  ++
  CCE28744.1 10 AAHQEAQSQSHQQPQPRQQ 28
                2222222222222222211 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.6e-05
     DUF4834   7 ilifiiailviglsilsvilrtvfglgsrkkssksaqkqfgnstnsnqqksq.........srsetkeegeiieeersekeakr 81 
                 i+i +++  + g+ +l+++l + +g+g   +   s  + +++s +++++ ++         +r+++++++ +++e r++k+++r
  CCE28744.1  73 IVIGVVLGTLAGIFLLFFLLYSALGFGPAARIL-SRPRAHAQSISNTTNTTNtsvpstrtgRRRRRSRHEREKHEVRTTKKRRR 155
                 688899999999999999999887855444333.22222223333332222222344445544444333333333333332333 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   2.5   5.3e-06     0.024      67     141 ..      11      88 ..       2      99 .. 0.31
   2 ?    2.5   0.6     0.047   2.1e+02      57      76 ..     119     141 ..     100     201 .. 0.39

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.3e-06
     Pex14_N  67 qeesasssatpqpqaasqtsqsspspsppaqqqqqqy.......rpPivtypefltkppk.....ppppPlrtwrdllitatalagl 141
                 ++++a+s++++qpq+ +q         p++q+++q +       +p  +t+p f++ p+      + p P +    +l t+ ++  l
  CCE28744.1  11 AHQEAQSQSHQQPQPRQQ---------PEYQSRPQRQpppflnpYPLAQTQPTFIAIPSTynnlaDSPSPGIVIGVVLGTLAGIFLL 88 
                 111111111111111111.........111111111112222333444444444444333000002333444444444444444444 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.047
     Pex14_N  57 vaassas.eqa......qeesasssat 76 
                 ++++++s +++           +s ++
  CCE28744.1 119 TNTTNTSvPSTrtgrrrR----RSRHE 141
                 111111121111111110....11111 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.9   0.00054       2.4       6      78 ..       8      88 ..       4     124 .. 0.61
   2 ?    6.5   0.2    0.0018       8.3      17      42 ..     152     178 ..     136     194 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00054
      PRIMA1  6 sktvaekvtescqeacqcrrypplpppppppppprl..lsltaaestvsplepwwselv......iiiavvcaslvfllvl 78
                ++++ ++++ + +++ q r++p + + p+  ppp l    l+ +++t+  + + +++l       i+i vv  +l  +++l
  CCE28744.1  8 AQAAHQEAQSQSHQQPQPRQQPEYQSRPQRQPPPFLnpYPLAQTQPTFIAIPSTYNNLAdspspgIVIGVVLGTLAGIFLL 88
                555667777778888899999999998888888877332223334444444444444321111223333333333333333 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0018
      PRIMA1  17 cqeacqcrryp.plpppppppppprll 42 
                  ++  + rr+p p   p  ppppp ++
  CCE28744.1 152 KRRRRHLRRNPgPGSVPVVPPPPPGVV 178
                 444555666553777888899999765 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.8   0.00038       1.7      11      32 ..      72      93 ..      70      95 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00038
    Syndecan 11 aviggvvvgllfaillvlflvY 32
                +++ gvv+g l  i+l+ fl+Y
  CCE28744.1 72 GIVIGVVLGTLAGIFLLFFLLY 93
                799******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1554  (0.0866752); expected 358.6 (0.02)
Passed bias filter:                      837  (0.0466841); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 1503.67
//
Query:       CCE28745.1  [L=445]
Description: related to L-sorbosone dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0058   16.2   0.0       0.63    9.6   0.0    2.5  2  SGL       SMP-30/Gluconolactonase/LRE-like region
  ------ inclusion threshold ------
      0.013   14.8   0.0       0.47    9.7   0.0    2.4  2  GSDH      Glucose / Sorbosone dehydrogenase
      0.036   14.1   0.0       0.56   10.4   0.0    3.0  3  NHL       NHL repeat


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0048        29     176     217 ..      55      97 ..      43     108 .. 0.80
   2 !    9.6   0.0   0.00011      0.63     129     180 ..     107     156 ..      96     164 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0048
         SGL 176 fadlkkgegepDGlavDaeGnvwvAvwgggkvvrfdpd.Gkli 217
                 f  l+++ ++p G++ D +Gn+ v   gg++++r+  d Gk +
  CCE28745.1  55 FKLLANDLQRPRGIVFDPKGNLLVVEGGGKGIRRIVLDdGKGL 97 
                 555566668899**********************998878755 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00011
         SGL 129 vlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlk 180
                 ++++ +   G+ +s+dgk l+   s  + ++ay++da++g+++ ++ ++++ 
  CCE28745.1 107 LVTESSLNHGIQLSADGKSLF--SSSVNDVYAYSYDASKGTVGPAKRIITGM 156
                 566667778***********9..89999***************999887655 PP

>> GSDH  Glucose / Sorbosone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.012        69     149     204 ..      32      85 ..       6      93 .. 0.83
   2 ?    9.7   0.0   7.8e-05      0.47     170     200 ..     217     247 ..     139     265 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.012
                 EEEEE-TTSSB-TT-TTTT-TTS-TTEEEE--SCE---EE-TTT--EEEEEE--SS CS
        GSDH 149 kilrlnkdGsvpadnpfvgkagakpeiwsyGhRnpqGlaldpdtgeLwesEhGprg 204
                   +  + +G  p+ np v ++g++ +  +     p G+++dp+ g+L  +E G +g
  CCE28745.1  32 VAIAAHCEGLKPKSNPQV-APGVQFKLLANDLQRPRGIVFDPK-GNLLVVEGGGKG 85 
                 555566778889999998.7999999999999999*******9.999999999887 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 7.8e-05
                 TS-TTEEEE--SCE---EE-TTT--EEEEEE CS
        GSDH 170 gakpeiwsyGhRnpqGlaldpdtgeLwesEh 200
                   + ++   G Rn  G+a dp+tg +w++E 
  CCE28745.1 217 YSDGRVLGWGLRNSVGVAEDPTTGYIWSVEN 247
                 445578889*******************995 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   9.3e-05      0.56       1      19 [.      62      80 ..      62      84 .. 0.88
   2 ?   -1.0   0.0      0.38   2.3e+03       3      11 ..     288     296 ..     286     297 .. 0.83
   3 ?   -2.8   0.0       1.4   8.2e+03       9      17 ..     429     437 ..     427     437 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.3e-05
                BSSEEEEEEETTTEEEEEE CS
         NHL  1 fnyPhGvavdsnGdiyVaD 19
                +++P+G++ d+ G+++V +
  CCE28745.1 62 LQRPRGIVFDPKGNLLVVE 80
                789*******999999976 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.38
                 SEEEEEEET CS
         NHL   3 yPhGvavds 11 
                 yP++va+++
  CCE28745.1 288 YPACVAIFD 296
                 9*****985 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.4
                 EETTTEEEE CS
         NHL   9 vdsnGdiyV 17 
                  d++G++yV
  CCE28745.1 429 SDTSGELYV 437
                 5789****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3250.57
//
Query:       CCE28746.1  [L=833]
Description: uncharacterized protein CPUR_02434 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.041   14.4   0.0       0.17   12.4   0.0    2.0  1  PH        PH domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.5e-06      0.17      16     102 ..     227     343 ..     214     346 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.5e-06
                 C.......SEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEE.........................EESTSSSTEE CS
          PH  16 k.......swkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfel.........................riverngsrt 82 
                 k       +w ++ +vL ++ ll y ++ ++ d  p + + l  ++    + ++ p+ ++++++                         r++er+  ++
  CCE28746.1 227 KaasntglKWTRKLYVLVSGHLLQYPAE-GHYDRLPEKALRLGPLSAAFAT-DAIPGCHWVIQVssiaamddapapaatsrsifsklsfRTTERRAATN 323
                 1456667799999999999999999999.6666666666666666665443.223333333333444444444444444555555567777766668** PP

                 EEEEESSHHHHHHHHHHHHH CS
          PH  83 yllqasseeerkeWikaiqs 102
                 +l+ ++++e+++ Wi++++ 
  CCE28746.1 324 LLMVFENAESMEGWIATLRI 343
                 ****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5911.29
//
Query:       CCE28747.1  [L=312]
Description: uncharacterized protein CPUR_02435 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0027   17.5   0.8     0.0027   17.5   0.8    2.2  2  Pox_A_type_inc  Viral A-type inclusion protein repeat
     0.0046   17.5   2.1        1.9    9.2   0.1    2.5  2  SlyX            SlyX
  ------ inclusion threshold ------
       0.33   11.1   2.3       0.38   10.9   0.4    2.1  2  GreA_GreB_N     Transcription elongation factor, N-terminal


Domain annotation for each model (and alignments):
>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.75   4.5e+03       2       8 ..     143     149 ..     143     149 .. 0.88
   2 !   17.5   0.8   4.5e-07    0.0027       6      19 ..     262     275 ..     257     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.75
  Pox_A_type_inc   2 EmsrlRs 8  
                     E+srl+s
      CCE28747.1 143 ELSRLQS 149
                     89***96 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 4.5e-07
  Pox_A_type_inc   6 lRsRIsDLErqLse 19 
                     lR RI+DLE+qL+e
      CCE28747.1 262 LRHRIRDLEKQLAE 275
                     9***********98 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.3     0.001       5.9      13      38 ..     124     149 ..     119     164 .. 0.92
   2 !    9.2   0.1   0.00032       1.9      29      56 ..     248     275 ..     243     291 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX  13 afqedtieeLndvvaeqqqqidrlqr 38 
                 a qe  +++L  ++ +qq +++rlq 
  CCE28747.1 124 AEQEGHVNRLLHMIRQQQMELSRLQS 149
                 78999*******************95 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHHHHHHHHT-XXXXXXXXX CS
        SlyX  29 qqqqidrlqrqlrllaerlkeleessga 56 
                  q + + l+r+ ++l+ r+++le++ ++
  CCE28747.1 248 YQAETQMLTRENQMLRHRIRDLEKQLAE 275
                 5889999****************99764 PP

>> GreA_GreB_N  Transcription elongation factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.57   3.4e+03      66      66 ..     137     137 ..     116     157 .. 0.55
   2 ?   10.9   0.4   6.4e-05      0.38      36      68 ..     239     275 ..     232     277 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.57
                  H CS
  GreA_GreB_N  66 L 66 
                  +
   CCE28747.1 137 I 137
                  2 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6.4e-05
                  HSSSTSSHHHHHHH....HHHHHHHHHHHHHHHHHHT CS
  GreA_GreB_N  36 eGDlsENaeYdaAk....eeqaeiearIreLedkLan 68 
                   G + ENa Y+a      +e +++  rIr+Le++La+
   CCE28747.1 239 LGGRDENAFYQAETqmltRENQMLRHRIRDLEKQLAE 275
                  68899******99877778999*************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       874  (0.0487478); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2394.73
//
Query:       CCE28748.1  [L=427]
Description: uncharacterized protein CPUR_02436 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-63  213.0   0.7    1.2e-62  212.6   0.7    1.1  1  DAO            FAD dependent oxidoreductase
    5.4e-06   26.5   0.0    1.2e-05   25.4   0.0    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.075   12.3   0.0       0.14   11.4   0.0    1.3  1  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.6   0.7   1.9e-66   1.2e-62       4     350 ..      37     421 ..      35     423 .. 0.85

  Alignments for each domain:
  == domain 1  score: 212.6 bits;  conditional E-value: 1.9e-66
                 EECTSHHHHHHHHHHHHTT...EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHH CS
         DAO   4 iiGGGiiGlstAyeLarrg...VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeeleal 99 
                 iiGGGiiGls+A++L+ ++   ++lle+++ +gs++S+rns ++h+g++y+p+ s + +l+l+++++l++++e+++  +++rrtG+ ++a+++++le+l
  CCE28748.1  37 IIGGGIIGLSIAHHLSLQPntsTLLLERHPSLGSETSSRNSEVIHAGIYYPPN-SLKTKLCLRGRDLLYRFCETHR--VGHRRTGKWIVAQTDDQLEQL 132
                 9***************99889***************************96665.5888***************987..9************9999**** PP

                 HHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEE.......TCEEEEE.......E CS
         DAO 100 dkllallleagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeed.......gkvwgve.......r 184
                 +kl++ ++  g++ ++l+++ev++   +++  +gal +p tg+vd + ++ al   +e++G+ i ++++v+g++++         + w++         
  CCE28748.1 133 QKLYEHCRGIGVPMRWLSEAEVQRHGEGVRARKGALESPCTGIVDVHGVMLALEGLLEEKGAVIALNSRVVGVRRRKsvagddgSGSWEIDvrdeakaA 231
                 *******8899999*****99999987755668****************************************77444555555344555576655441 PP

                 ECTEEEE................EEEEEEE--GGGHHHH.HTT.CTT.TSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEE CS
         DAO 185 ttpgend................aadavVnaaGawsdll.gll.kel.dlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvl 264
                                        + ++vVnaaG+++  + +++ ++  ++ ++ ++g ++ +++       +++i+p p +   g g+++t +++grv+
  CCE28748.1 232 ------AsdegddgsasatissiTSETVVNAAGLGAVDVhNMIvPDAqRKTMYYAKGNYFSYSKSWP-R-ISRLIYPAPNPGAAGLGTHLTLDLSGRVR 322
                 ......022344566777777663366********98777888766656788**********55444.3.4569************************* PP

                 EEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGGCG..EEEEEEEEEE..ETTS.........SEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHH CS
         DAO 265 vGgtadeesgdddpevdeedidellealrklfPqlgd..vlrkwaGlrp..lpdg.........lpligetpgvkglylatGhsghGltlapatGklla 350
                 +G++ ++ s+++d++v+++++++ + ++++++P++++  ++  +aG+rp  +  g         ++++  +pg++g + + G++++Glt+++a+G+ + 
  CCE28748.1 323 FGPDIEWVSDPNDLSVSSARLERAIGEIKTYLPGVDEtcLQPDYAGIRPklTYKGagqmgsnfnDFVVRLEPGYPGWVNCLGIESPGLTSSLAIGERVR 421
                 ***999****************************64455778*******74334434566667777777777***********************9875 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0     2e-09   1.2e-05       1      40 [.      37      77 ..      37      93 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2e-09
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekrdrlGGraasyev 40
                   I+G+G+ Gl++A++L+ + + + llle++++lG   +s++ 
     CCE28748.1 37 IIGGGIIGLSIAHHLSLQpNTSTLLLERHPSLGSETSSRNS 77
                   9***************99899************98888765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.3e-05      0.14      21      55 ..      36      70 ..      19      74 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.3e-05
                EEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4 21 vivGaGssGLtaayylakkpdlkvailersvspGG 55
                 i+G+G  GL+ a+ l+ +p+  +++ler+ s+G 
  CCE28748.1 36 TIIGGGIIGLSIAHHLSLQPNTSTLLLERHPSLGS 70
                699***************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3111.54
//
Query:       CCE28749.1  [L=646]
Description: uncharacterized protein CPUR_02437 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-12   44.6   0.0    2.2e-11   43.5   0.0    1.6  1  DUF2415      Uncharacterised protein domain (DUF2415)
     0.0088   16.3   0.0          4    7.8   0.0    3.1  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.87   10.6   2.5         49    5.0   0.0    4.1  5  WD40         WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> DUF2415  Uncharacterised protein domain (DUF2415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   3.7e-15   2.2e-11       1      42 [.     318     357 ..     318     358 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 3.7e-15
     DUF2415   1 GAfRvckFSpesglnDLLvisEhvgrvHlvDlRtgldehqVi 42 
                 GA+R ++F p +   D+L ++E++grv+ +D+R++++ +q+i
  CCE28749.1 318 GAVRDMAFCPGPF--DILAWTEDRGRVGFADMRSNFEMRQII 357
                 9********8888..**************************9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.5   1.5e+04       6      24 ..      71      89 ..      69      97 .. 0.66
   2 !    4.7   0.0    0.0061        36      45      67 ..     271     293 ..     244     296 .. 0.89
   3 !    7.8   0.0   0.00066         4      41      64 ..     607     630 ..     591     645 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.5
  ANAPC4_WD40  6 tmDLiAlatedgellvfRl 24
                 t + +A+  +d+ ++ +R 
   CCE28749.1 71 TGEFVAIKLDDEAVESNRQ 89
                 5566777777777777775 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0061
  ANAPC4_WD40  45 aWkpdgklLavaysdgevrllda 67 
                  +++ +g  La++++ g++++++a
   CCE28749.1 271 CFSASGAYLAIGTQHGTISIFNA 293
                  78999***************987 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00066
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrl 64 
                    +LaW++dg  L v+ +dg  +l
   CCE28749.1 607 TAGLAWSEDGCTLFVGAQDGIYEL 630
                  468*****************8776 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         3   1.8e+04      23      29 ..      63      69 ..      60      70 .. 0.78
   2 ?   -2.5   0.0         2   1.2e+04      13      23 ..     141     153 ..     138     175 .. 0.62
   3 ?   -0.3   0.0      0.38   2.3e+03      13      34 ..     199     220 ..     193     222 .. 0.75
   4 ?    5.0   0.0    0.0083        49      16      38 .]     270     292 ..     266     292 .. 0.90
   5 ?    1.5   0.1      0.11   6.5e+02      15      32 ..     609     626 ..     591     627 .. 0.89

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3
                SEEEEEE CS
        WD40 23 awlasGs 29
                 wl++Gs
  CCE28749.1 63 GWLCCGS 69
                6999998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2
                 EEEEE..EETTSS CS
        WD40  13 vtsla..fspdga 23 
                 v+++   f+p+++
  CCE28749.1 141 VNCVTlwFPPSSD 153
                 7788776666655 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.38
                 EEEEEEETTSSEEEEE.ETTSEE CS
        WD40  13 vtslafspdgawlasG.sdDgtv 34 
                 v+    spdg++l+ G  dD+ +
  CCE28749.1 199 VNRAVISPDGRMLI-GiLDDPYL 220
                 655668******98.87557766 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.0083
                 EEEETTSSEEEEEETTSEEEEEE CS
        WD40  16 lafspdgawlasGsdDgtvriWd 38 
                  +fs +ga+la G+  gt+ i++
  CCE28749.1 270 ACFSASGAYLAIGTQHGTISIFN 292
                 479****************9987 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.11
                 EEEEETTSSEEEEEETTS CS
        WD40  15 slafspdgawlasGsdDg 32 
                 +la+s dg  l+ G  Dg
  CCE28749.1 609 GLAWSEDGCTLFVGAQDG 626
                 689********99*9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 5029.20
//
Query:       CCE28750.1  [L=679]
Description: probable SSC1-mitochondrial heat shock protein 70-related protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.1e-262  870.4  15.0   5.8e-262  870.2  15.0    1.0  1  HSP70     Hsp70 protein
    7.3e-14   51.3   4.3      1e-11   44.2   1.0    2.5  2  MreB_Mbl  MreB/Mbl protein
    0.00043   20.1   0.1     0.0012   18.6   0.1    1.8  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
     0.0054   16.0   2.2      0.079   12.2   0.0    3.0  4  StbA      StbA protein
  ------ inclusion threshold ------
       0.13   12.6   2.6        0.4   11.0   2.6    1.7  2  SET       SET domain


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  870.2  15.0  1.6e-265  5.8e-262       1     598 [.      49     650 ..      49     651 .. 0.99

  Alignments for each domain:
  == domain 1  score: 870.2 bits;  conditional E-value: 1.6e-265
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTT.SEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkav 98 
                 viGiDLGttns+vavmeg+ +++i+n+eg+rttPsvvaF+++ erlvG aAkrqav+np+nt+f++KrliGrkf+d evq++ike+pyk+v+++ng+a+
  CCE28750.1  49 VIGIDLGTTNSAVAVMEGKVPRIIENSEGARTTPSVVAFAEDgERLVGVAAKRQAVVNPENTLFATKRLIGRKFTDIEVQRDIKEVPYKIVQHNNGDAW 147
                 79************************************************************************************************* PP

                 EEEEETTEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSX CS
       HSP70  99 veveaagekftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggt 197
                 v ++  g++++p+qi+++vL+k+ketaeayl+++v++av+tvPaYfndaqRq+tkdAg+iAGLnvlR+vNepTAaalaYGldk+  +r+v+vyDlGggt
  CCE28750.1 148 VAAR--GQNYSPSQIGGFVLNKMKETAEAYLSRPVKNAVVTVPAYFNDAQRQSTKDAGQIAGLNVLRVVNEPTAAALAYGLDKEA-DRVVAVYDLGGGT 243
                 **99..******************************************************************************9.************* PP

                 EEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTT.EEEEEEEEH CS
       HSP70 198 fdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedg.kdlseklsR 295
                 fd+Sile+++Gvfevk+T+gDthlGGedfD +lv+h+v++fkk++g+dl+ d++a+qr++eaaekaK+eLSss qt+inl+++t+d++g k++++klsR
  CCE28750.1 244 FDISILEIQQGVFEVKSTNGDTHLGGEDFDIHLVRHIVADFKKTSGLDLTGDRMAIQRIREAAEKAKIELSSSLQTDINLPFITADASGpKHINMKLSR 342
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBESS-E CS
       HSP70 296 akfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvtpLsl 394
                 a++e++v++l+ rt+epv+kalkda+l+++ei+ev+lvGG+tR+Pkv e+vk++fg++p k+vnpDeava+GAA+q++vlsg  ev+dllllDvtpLsl
  CCE28750.1 343 AQLEKMVDPLITRTIEPVRKALKDAGLQAKEIQEVLLVGGMTRMPKVAESVKSIFGRDPAKSVNPDEAVAVGAAIQGAVLSG--EVRDLLLLDVTPLSL 439
                 **********************************************************************************..*************** PP

                 EEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTCCEEE CS
       HSP70 395 gietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketgkeee 493
                 giet+ggv+ +li+rnttiptkks+++staad q+av+i+v+qgerelvkdnkll++f+l gippa r  p+ieVtfdida+ il+vsakd +t+k+++
  CCE28750.1 440 GIETMGGVFSRLINRNTTIPTKKSETYSTAADFQSAVDIKVYQGERELVKDNKLLANFQLVGIPPARRNIPKIEVTFDIDADSILHVSAKDLSTNKDQS 538
                 *************************************************************************************************** PP

                 EEEECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHCHTTSSC.......HHHHHHHHHH CS
       HSP70 494 itieaseglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleeeaekvseaekekvesaieeLkeeleeee.......keeieaktee 585
                 iti++ +gls++ei++mv+d+e++ae+dk++k+aiea n+a+++++++e++l+e+a+k+++ e+++++++i+ L+e +++++       ++ei++kt+e
  CCE28750.1 539 ITIASGSGLSDNEIQQMVQDSEKYAETDKERKSAIEAANRADSVLNDTETALTEHADKLDKTEADAIKEKIATLREFVAKNQsgegsatAAEIKEKTDE 637
                 ****************************************************************************998777788888899999***** PP

                 HHHHHHHHHHHHH CS
       HSP70 586 lkkvvekiaekly 598
                 l+ ++ ++++k+ 
  CCE28750.1 638 LQVASLNLFDKMH 650
                 *999999988875 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0004       1.5       3      45 ..      49     100 ..      47     140 .. 0.66
   2 !   44.2   1.0   2.9e-15     1e-11      92     317 ..     179     417 ..     161     423 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0004
                 EEEEEE-SSEEEEEE.TTTE..EEEEE......ES-EEEETTT--EEEESHH CS
    MreB_Mbl   3 dlgiDLGtantlvyv.kgkg..ivlne......psvvAikkktkkvlavGee 45 
                  +giDLGt+n  v v +gk   i+ n       psvvA+ ++ ++++ v  +
  CCE28750.1  49 VIGIDLGTTNSAVAVmEGKVprIIENSegarttPSVVAFAEDGERLVGVAAK 100
                 59********999651555322444322333338888888887776555443 PP

  == domain 2  score: 44.2 bits;  conditional E-value: 2.9e-15
                 S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETT.EEEEEEE....ES-SHHHHHHHHH CS
    MreB_Mbl  92 skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavislg.givtsks....vrvaGdeldeaii 185
                 + ++ v++vP   ++ +r+  k+a + aG +   +++ep aAA+  gl+ e+ +   v d+Gggt +++++ ++ g+ + ks     +++G+++d +++
  CCE28750.1 179 PVKNAVVTVPAYFNDAQRQSTKDAGQIAGLNVLRVVNEPTAAALAYGLDKEADRVVAVYDLGGGTFDISILEIQqGVFEVKStngdTHLGGEDFDIHLV 277
                 456899*****************************************************************986266666662233579********** PP

                 HHHHHHHSEE--.............HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHH CS
    MreB_Mbl 186 kyirkkynlliG.............ertaekikieigsavkeeeeekmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaad 271
                 ++i  +++ + G             ++ aek kie++s  +++ +        d       ++++s +++++++   +++ +e v+++L+++   L a 
  CCE28750.1 278 RHIVADFKKTSGldltgdrmaiqriREAAEKAKIELSSSLQTDINL--PFITADASGPKHINMKLSRAQLEKMVDPLITRTIEPVRKALKDA--GLQAK 372
                 9998888755442111111111111223455555555555444433..223344444445567889999********************986..57666 PP

                 HHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHH CS
    MreB_Mbl 272 ivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtgk 317
                  +++ ++l+GG + +  + + +++ +g     + +p ++va G+++
  CCE28750.1 373 EIQE-VLLVGGMTRMPKVAESVKSIFGRDPAKSVNPDEAVAVGAAI 417
                 6654.8889*********************************9875 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   3.5e-07    0.0012     145     196 ..     367     421 ..     341     423 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.5e-07
      FGGY_C 145 d..sgkpldrlavdGGgskndllmqllAdilg.vpVerpktaeatalGaAilAav 196
                    + k++++++++GG+++ + +++   +i+g  p + + ++ea+a+GaAi +av
  CCE28750.1 367 AglQAKEIQEVLLVGGMTRMPKVAESVKSIFGrDPAKSVNPDEAVAVGAAIQGAV 421
                 2545788*************************99999999************997 PP

>> StbA  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.35   1.2e+03     164     189 ..      48      73 ..      33      86 .. 0.75
   2 ?    3.0   0.1     0.014        49     162     196 ..     231     267 ..     196     268 .. 0.64
   3 !   12.2   0.0   2.2e-05     0.079     170     294 ..     267     398 ..     264     412 .. 0.82
   4 ?   -3.6   0.0       1.4     5e+03     103     132 ..     590     619 ..     587     624 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.35
        StbA 164 slLiiDlGGttLDvakvrgklegisk 189
                 s++ iDlG t   va ++gk+  i +
  CCE28750.1  48 SVIGIDLGTTNSAVAVMEGKVPRIIE 73 
                 44559***999999999999887755 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.014
        StbA 162 leslLiiDlGGttLDva..kvrgklegiskvkgdski 196
                    + + DlGG t D++  +++  + ++  + gd ++
  CCE28750.1 231 DRVVAVYDLGGGTFDISilEIQQGVFEVKSTNGDTHL 267
                 3345578*********932344445555666666665 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 2.2e-05
        StbA 170 lGGttLDvakvrgklegiskvkgdskiGvslitdavkealetaktrtssfladel.....iknrkdeeyLkrrindedkresvlevinekvkkLkervi 263
                 lGG   D+  vr  ++++ k+ g + +G  +  + ++ea e+ak++ ss l  ++       +    ++++ +++ ++  + v   i +  + +++ ++
  CCE28750.1 267 LGGEDFDIHLVRHIVADFKKTSGLDLTGDRMAIQRIREAAEKAKIELSSSLQTDInlpfiTADASGPKHINMKLSRAQLEKMVDPLITRTIEPVRKALK 365
                 9*********************************************99988776533331345566777777777777777777788888888899999 PP

        StbA 264 ravsefsgythvmvvGGGael..iaeaikkate 294
                 +a  + ++++ v++vGG + +  +ae +k  ++
  CCE28750.1 366 DAGLQAKEIQEVLLVGGMTRMpkVAESVKSIFG 398
                 999999***********9987668888888776 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 1.4
        StbA 103 lseyydannqpneenierkkanvmrevelq 132
                 l+e+ d+ ++++ + i+ k a ++  v+ +
  CCE28750.1 590 LTEHADKLDKTEADAIKEKIATLREFVAKN 619
                 788999999999999999988888777655 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.2   7.8e+03      38      88 ..     190     227 ..     112     273 .. 0.58
   2 ?   11.0   2.6   0.00011       0.4       6      96 ..     505     660 ..     505     677 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.2
                 TEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  38 ylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkassk 88 
                 y+             ++++  s++  +q ++ +  +  +e t+aal+   +
  CCE28750.1 190 YF-------------NDAQRQSTKDAGQIAGLNVLRVVNEPTAAALAYGLD 227
                 22.............444444444444444444444444444444444444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00011
                 ESSXBXTTXEEEEEEECCEECHHHHHHHHHH........................................................HTEEEEEXGGXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................xxxxxxxxxxxx RF
         SET   6 AtedIpkgeficeypeeiiltkdeadksele........................................................aylfslpeapkn 48 
                 A+++Ipk e+ + ++  +il+   +d+s ++                                                        +++++l+++ ++
  CCE28750.1 505 ARRNIPKIEVTFDIDADSILHVSAKDLSTNKdqsitiasgsglsdneiqqmvqdsekyaetdkerksaieaanradsvlndtetaltEHADKLDKTEAD 603
                 89*************999**************************************9999999999999999999999999999888888888877666 PP

                 ....GGSX.HHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSX....X CS
                 ....xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
         SET  49 ....laft.kelakasastllqklakdqkqaekedtdaalkasskaesdlna....s 96 
                       +t +e  + ++s++++++a+++k++ +e + a l+ + k+++++ a    s
  CCE28750.1 604 aikeKIATlREFVAKNQSGEGSATAAEIKEKTDELQVASLNLFDKMHKSRSAgsegS 660
                 66554444899***********************************99996443331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1400  (0.0780858); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 5090.81
//
Query:       CCE28751.1  [L=646]
Description: related to signal recognition particle 68 kDa protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.4e-200  665.3   6.1   1.1e-199  665.1   6.1    1.0  1  SRP68     RNA-binding signal recognition particle 68
  ------ inclusion threshold ------
      0.074   13.3   0.1        2.9    8.2   0.0    2.7  2  YqjK      YqjK-like protein
       0.66   10.3   6.4       0.15   12.3   0.4    2.6  2  Mis14     Kinetochore protein Mis14 like


Domain annotation for each model (and alignments):
>> SRP68  RNA-binding signal recognition particle 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  665.1   6.1  1.9e-203  1.1e-199       1     559 []      15     595 ..      15     595 .. 0.97

  Alignments for each domain:
  == domain 1  score: 665.1 bits;  conditional E-value: 1.9e-203
                 TSSS-HHHHHHHHHHHHHHHHHHTT--SS----SS-TT.--HHHHHH-THHHHHHHHHHHHHHHHHHHHHHHTCTTTTTS-HHHHHHHHHHHHHHHHHH CS
       SRP68   1 LrhgDYqrYrqyltrrLrrlRkkLkfatgkrgkyakka.itaeqvatdvrylhllLltaERaWAyamalKaehsadkkgitgrkRshivsRLrKAaklA 98 
                 L++gDY++Y+ +lt+rL+++RkkL+++t++rgk+ k++ it+e+++ +++y+hllLlt+ERaWA+am++Ka+h+a +k+i gr+Rshi+sRL+KAak+A
  CCE28751.1  15 LLYGDYATYHGQLTKRLLSSRKKLGIVTKNRGKFRKQEpITPEDISANNEYVHLLLLTSERAWAQAMSIKASHTAAQKEIAGRARSHIISRLQKAAKTA 113
                 89************************************************************************************************* PP

                 HHHHHHHHC.S.-S--HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHH.TTTHHHHHHHTHH...HHHHHHHHHCT-SSS--HHH CS
       SRP68  99 eeLvellse.assgadertkLEarAYaallrGallfekqqWekalesyskaraiyeaLakvt.seefkdllsetveelePsiRYcaYqlkeprtapset 195
                 + Lv++ls+ a++ga++r++LE+rAY al+rGa+ fek++We +l++ys+ar+iy aLa+++ ++ fkdlls+t++   PsiR++aYq+k+prt+p++t
  CCE28751.1 114 QTLVDALSSaATTGASSRDVLETRAYTALMRGAMFFEKRDWELCLQNYSVARVIYCALASTGsGDLFKDLLSDTID---PSIRFAAYQMKTPRTVPIST 209
                 ****************************************************************************...******************** PP

                 HHHHHHHH-.XXXXXXXXXXXXXXXXXXXXXXXX.X.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XX.XXXXXXXXXXXXX CS
       SRP68 196 iarkafekaendllqskiekldpealkeqaaskssk.....apseitWrgrevkvedakirlalaavqeakaelee.......eskssakekaaaYdkv 282
                 ia++af+++ ++ l++++++ldp  l+e +a+++ +     ap++itWrgrev++eda+i+la+a+v++ak +l++       + + +++e+aa+Yd++
  CCE28751.1 210 IAKQAFPRS-DASLVQEVDSLDPRLLAEGDAAAKLGdraenAPRTITWRGREVQIEDAQIALAWASVEAAKVNLANnlaqfspQ-DPQPHEMAAKYDEI 306
                 *********.9*******************997766999*************************************99888643.69************ PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX.X...................... CS
       SRP68 283 LiasqDavdatkqaidelekegvaqsdkrmqslqilrtavnyeklswrieRnrvlvgeadgklaeessakskkkk.k...................... 358
                 L+a+qDavdatkqaidel +egv+qsd+rmqslqi+rtavnye++swri+Rnrvl+g +dg   +++  +++k+k k                      
  CCE28751.1 307 LMATQDAVDATKQAIDELDAEGVPQSDSRMQSLQITRTAVNYEMISWRIGRNRVLTGPHDGGPIDYTVPRRRKAKaKakvaqegdaaadqqanrprelp 405
                 *******************************************************************999999997799******************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.... CS
       SRP68 359 egrklakleElvrLydallqslesikelpgvaadeelaeeleakkayfrAlrclyiarshalaskyaeAlALlkrAlelaeealeelsksdaksk.... 453
                  ++klakl+E+ +Lyd++lq+l+sikelpg+aad+ela++++ +++yf+Al+c++iarshal + +++AlAL+++A++l+++a +  +  +++++    
  CCE28751.1 406 LSKKLAKLRERFALYDGTLQNLQSIKELPGIAADQELAARINGYEKYFEALKCFSIARSHALVGTAVNALALINHAHTLLQDAYPDAAPLEKDATisdh 504
                 9**********************************************************************************6655555443334558 PP

                 .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXX.............XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX CS
       SRP68 454 .peslevlleelqeLadelkgelqrarAlveleelkkeeeslkkslsklslsekaaakkkkkpllerLdeypssggevdlknlvelPPklepvpvKPif 551
                  p +++v+ + +++L + l+ el r+rA+v+l++l+k+e             ++aa+k  ++ lle+Ld+yp+   +++ +nlve+PPkl  +p KPif
  CCE28751.1 505 hPLNVDVHPTAISFLLKLLQRELLRYRAIVHLHNLRKAE-------------REAAKKVPQPSLLETLDTYPT---YINPRNLVEWPPKLALIPQKPIF 587
                 9***********************************999.............7777888899**********9...68999****************** PP

                 XXXXXXXX CS
       SRP68 552 lDvAlNyI 559
                 lDvA+NyI
  CCE28751.1 588 LDVAWNYI 595
                 *******9 PP

>> YqjK  YqjK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00049       2.9      12      43 ..     406     437 ..     396     440 .. 0.87
   2 ?    1.8   0.0     0.047   2.8e+02      34      57 ..     460     483 ..     439     487 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00049
        YqjK  12 LaqaaepwekalapvDrgwqtlrslrkhlilv 43 
                 L+++++++++++a +D ++q l+s+++ + ++
  CCE28751.1 406 LSKKLAKLRERFALYDGTLQNLQSIKELPGIA 437
                 8999**********************988765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.047
        YqjK  34 rslrkhlilvsgllallgvrrPrr 57 
                 +  r+h+++++++ al  + + + 
  CCE28751.1 460 SIARSHALVGTAVNALALINHAHT 483
                 478************999988555 PP

>> Mis14  Kinetochore protein Mis14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   2.6e-05      0.15      64     117 ..     296     347 ..     293     353 .. 0.91
   2 ?   -0.9   1.1      0.32   1.9e+03      73     100 ..     607     628 ..     588     639 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHHCCCHHHHHHCT--HHHHH--..------SSSHHHHHHHHHHHH CS
       Mis14  64 Prkiaeayakelkaeleeldeyleainelekqekkdpeeddededekerleelv 117
                 P++ a++y + l a++  +d++++ai el++  +  p++d+++++++  ++ ++
  CCE28751.1 296 PHEMAAKYDEILMATQDAVDATKQAIDELDA--EGVPQSDSRMQSLQITRTAVN 347
                 999****************************..***********9998776665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.32
                 HHCCCHHHHHHCT--HHHHH--..---- CS
       Mis14  73 kelkaeleeldeyleainelekqekkdp 100
                 +e ++ +ee+ e       +e++++k+p
  CCE28751.1 607 DEEEQGQEEVVE------AEEEKKEKEP 628
                 333333333333......2222122222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1000  (0.0557756); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 4901.21
//
Query:       CCE28752.1  [L=1177]
Description: related to helicase-like transcription factor protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-70  235.6   0.0      1e-69  234.9   0.0    1.3  1  SNF2_N          SNF2 family N-terminal domain
      2e-12   47.5   0.0    8.5e-12   45.4   0.0    2.1  2  Helicase_C      Helicase conserved C-terminal domain
    5.2e-06   26.3   0.0    1.1e-05   25.3   0.0    1.4  1  DEAD            DEAD/DEAH box helicase
    8.2e-05   22.5   5.2    0.00019   21.3   5.2    1.7  1  zf-RING_5       zinc-RING finger domain
    0.00097   19.0   1.7     0.0034   17.2   1.7    1.9  1  Prok-RING_4     Prokaryotic RING finger family 4
     0.0054   16.6   5.3      0.018   14.9   5.4    1.9  1  zf-C3HC4        Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.011   15.6   1.7      0.011   15.6   1.7    2.1  2  zf-C3HC4_3      Zinc finger, C3HC4 type (RING finger)
      0.024   15.0   1.6       0.06   13.7   1.6    1.7  1  zf-RING_2       Ring finger domain
      0.072   13.1   2.1       0.19   11.8   2.1    1.7  1  zf-RING_UBOX    RING-type zinc-finger
      0.094   12.8   0.2       0.19   11.8   0.2    1.5  1  DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domai
       0.31   11.1   3.1       0.45   10.6   0.9    2.5  2  ADK_lid         Adenylate kinase, active site lid
        3.8    7.7   7.7        2.4    8.3   3.8    2.4  2  Zn-ribbon_8     Zinc ribbon domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.9   0.0   6.8e-73     1e-69       1     346 [.     454     823 ..     454     826 .. 0.85

  Alignments for each domain:
  == domain 1  score: 234.9 bits;  conditional E-value: 6.8e-73
                 HHHHHHHHH..............................................HHHHHTT--EEE---TTS--HHHHHHHHH............... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............ RF
      SNF2_N   1 yQkeavkwmlkReqnlqdleaalrkllk.......tldgekiyvnpatgevveesaeakqsvrGGiLaDemGLGKTvqvlalilaqr............ 80 
                 +Qk+++ +m  Re+ lq  e+a++k+         + +gek y+n++tg   + +++   + rGGiLaD mGLGKT+ +l+l++               
  CCE28752.1 454 HQKQGLYFMATREKPLQ--EQAAEKGMVsiwqtkvNVRGEKSYLNVITGDEQRAPPP---ETRGGILADMMGLGKTLSILSLVASTLreardwertpiv 547
                 9*************999..566666665677799999***********988877765...689*********************666566666666666 PP

                 ................HHTTTS---..............S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE- CS
                 ................xxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  81 ................akeekdkek.......krkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvitt 156
                                 a       +        ++ +  + tLi++P s++++We+++++h+++++l   vy+g +      +  + + la++dvvi t
  CCE28752.1 548 qrptakadskassnghA-------AsqtnlepATVTRHVKTTLIICPLSTVTNWEEQLKQHLAPGSLSYHVYHGTN------RIKDVDKLAEFDVVIST 633
                 55555554444444332.......03333333667777777*********************************75......44456899********* PP

                 HHHHHHHT..........TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHHHHHH CS
                 xxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 157 Ydvlsreaelq....kkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqrpiea 251
                 Y  +s e + +    +   +l+++ w+r+vlDE+h+++ +t+   +a+++L++++rw +tGTP+qn l d+ +Ll fLr  pf+++  f++ + +p++a
  CCE28752.1 634 YGSVSYELASRrrrkEGSFPLEEIGWFRIVLDEAHMIREQTTLQFKAMCRLQAERRWAVTGTPVQNRLDDFAALLGFLRLHPFDDRSKFNRYVVEPFKA 732
                 ****9988766666555669******************************************************************************* PP

                 HHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HH.H-HHHHHHHHHHHHH- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
      SNF2_N 252 qaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksssksk.ekilelllelrqacnh 346
                 ++++ + +L+ l+  + lrr k+++  +lP+++  +++l++s++er++Y  +    +++ +++l   s+++   +s  +  +il+ +l+lr  c h
  CCE28752.1 733 CDPEIVPKLRVLVDTITLRRLKDKI--DLPKREDLVVRLDFSPEERSVYD-MFARNAQDRVKVLAGVSVVKALGGS--TyIHILKAILRLRLLCAH 823
                 ************************9..***********************.7777777888877777776666666..4488*********99988 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.7     1e+04      17      72 ..     580     632 ..     574     633 .. 0.55
   2 !   45.4   0.0   5.7e-15   8.5e-12      15     111 .]    1018    1116 ..    1002    1116 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.7
                 SEEEEEESSHHHHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEE CS
  Helicase_C  17 gkilifvntidrlekvklllekk...gikvavlhgelpqnereeileqfnkgesdvLia 72 
                 +++li+++  +  +  + l+++    ++++ v+hg     +r++ +++    e+dv+i+
  CCE28752.1 580 KTTLIICPLSTVTNWEEQLKQHLapgSLSYHVYHG----TNRIKDVDKL--AEFDVVIS 632
                 56666666666433335553333555788888888....4555555555..34555555 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 5.7e-15
                  TTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSS CS
  Helicase_C   15 eggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgR 109 
                     k+++f+  +++l+ +++ l+  gi++++l+g+++   r +++e+f+ + ++d +L++  +++ G++++  n V  +++++n++   q+i+R++R
  CCE28752.1 1018 PPFKSVVFSGWTSHLDLIEVALHAAGITFVRLDGSMTRPARTAAMEKFReDPSVDvILVSIMAGGLGLNLTAGNSVYVMEPQYNPAAEAQAIDRVHR 1114
                  566899*******998888888999************************7799999***************************************** PP

                  TT CS
  Helicase_C  110 ag 111 
                   g
  CCE28752.1 1115 LG 1116
                  86 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   7.3e-09   1.1e-05      23     139 ..     519     676 ..     507     693 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 7.3e-09
                 TTSSHHHHHHHHHHHHHHHS...TTSTS....................................-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxx...xxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  23 TGsGKTlaflipvlqivyet...kgktg....................................pkalivePtreLaeqtlnnlkkfkkyidlrvllii 82 
                  G GKTl  l  v +++ e    +   +                                    + +li++P+     +  ++lk+ + + +l+++ ++
  CCE28752.1 519 MGLGKTLSILSLVASTLREArdwE---RtpivqrptakadskassnghaasqtnlepatvtrhvKTTLIICPLSTV-TNWEEQLKQHLAPGSLSYH-VY 612
                 599*****9999999997665440...24566666677778888999999999999999999999********985.5689999999998778887.88 PP

                 TTSSHHHHHHHHHTTCSEEEEEHHHHHHHH......HCTSSHCTTEEE..EEEETHHHHHHTTTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
        DEAD  83 ggvaardqlskldngvdivvgtpgrlddll......stgklnlsqvrf..lVlDEadrlldqgfs 139
                 +g+++ ++++kl ++ d+v++t g +   l      ++g++ l+++ +  +VlDEa+++ +q   
  CCE28752.1 613 HGTNRIKDVDKL-AEFDVVISTYGSVSYELasrrrrKEGSFPLEEIGWfrIVLDEAHMIREQTTL 676
                 9999999*****.9**************77799887778899****99899*********99433 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   5.2   1.3e-07   0.00019       2      43 ..     878     948 ..     877     949 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.3e-07
   zf-RING_5   2 CnkCfekl...............skeek.......fyltsCgHifCekClkkll..........ekeavCpiCr 43 
                 C  C++kl               +   +        y+t+C H++C +C +++            +   Cp+C+
  CCE28752.1 878 CIECSKKLqagesqhvegpeqnhQ---QspqddalGYMTPCFHVVCRNCYQTYHerarqllqpgSSTGPCPVCG 948
                 888888888888888877765440...24455678****************************9999******7 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.7   2.3e-06    0.0034      13      40 ..     912     951 ..     900     955 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.3e-06
  Prok-RING_4  13 lepCgHlvCkeCfdskdls............sCPlCqrri 40 
                  + pC H+vC++C++                  CP+C +++
   CCE28752.1 912 MTPCFHVVCRNCYQTYHERarqllqpgsstgPCPVCGSHV 951
                  68************98444456677778888899998876 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   5.4   1.2e-05     0.018      13      41 .]     911     947 ..     878     947 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
                 .E-TTS--B-CHHHHHHHHC........TSSB--TTT CS
    zf-C3HC4  13 elleCkHsfCskCirkilks........rkkvkCPlC 41 
                  +++C H +C++C++++ +         +++ +CP+C
  CCE28752.1 911 YMTPCFHVVCRNCYQTYHERarqllqpgSSTGPCPVC 947
                 79*****************99*****9989999**** PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.72   1.1e+03      25      35 ..     877     887 ..     869     892 .. 0.76
   2 ?   15.6   1.7   7.3e-06     0.011      17      48 ..     912     952 ..     905     953 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.72
                 E-HHHHHHHHH CS
  zf-C3HC4_3  25 lCeeCaekllk 35 
                 +C eC++kl++
  CCE28752.1 877 ACIECSKKLQA 887
                 58888888855 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 7.3e-06
                 ETTEEEEEE-HHHHHHHHH..........TT-B-TTT--B-- CS
  zf-C3HC4_3  17 llpCgHlvlCeeCaekllk..........rkkkCpiCrrpie 48 
                 + pC H+ +C +C +++++          ++  Cp+C ++++
  CCE28752.1 912 MTPCFHV-VCRNCYQTYHErarqllqpgsSTGPCPVCGSHVR 952
                 67*****.*********99999*****9999******99875 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.6     4e-05      0.06      18      43 ..     912     947 ..     901     948 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4e-05
   zf-RING_2  18 llpCgHvfhreClerwlrssst..........CPlC 43 
                  +pC Hv +r+C +++ ++ ++          CP+C
  CCE28752.1 912 MTPCFHVVCRNCYQTYHERARQllqpgsstgpCPVC 947
                 349**********7765555555666666******* PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.1   0.00013      0.19      14      39 .]     913     945 ..     902     947 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
  zf-RING_UBOX  14 lpCGHtFCreClw.......elskslegafkCP 39 
                   +pC H+ Cr+C +       +l + ++ +  CP
    CCE28752.1 913 TPCFHVVCRNCYQtyherarQLLQPGSSTGPCP 945
                   58**********434445566777777777776 PP

>> DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00013      0.19       2      11 ..     944     953 ..     943     965 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
  DNA_ligase_ZBD   2 CPvCGsavvR 11 
                     CPvCGs+v  
      CCE28752.1 944 CPVCGSHVRA 953
                     *******964 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       2.5   3.8e+03      17      24 ..     237     244 ..     232     245 .. 0.83
   2 ?   10.6   0.9    0.0003      0.45       3      29 ..     919     949 ..     918     953 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.5
                 --SSTTB- CS
     ADK_lid  17 pPkveglC 24 
                  Pk+e +C
  CCE28752.1 237 DPKNEEVC 244
                 6******* PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0003
                 E-TTT--EEETT...T.B--SSTTB-TTT-- CS
     ADK_lid   3 vCpkCGrsYhvv...f.npPkveglCDkCGe 29 
                 vC++C  +Yh +   +  p    g C +CG+
  CCE28752.1 919 VCRNCYQTYHERarqLlQPGSSTGPCPVCGS 949
                 9*********55887336779*********8 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.75   1.1e+03      16      36 ..     865     885 ..     861     887 .. 0.69
   2 ?    8.3   3.8    0.0016       2.4       2      37 ..     914     952 ..     914     954 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.75
  Zn-ribbon_8  16 evlqsisdapltaCPeCgsev 36 
                  e ++ + + ++ aC eC +++
   CCE28752.1 865 EMFALMQETNNDACIECSKKL 885
                  5555566777788****8766 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0016
  Zn-ribbon_8   2 PiYeYrCeeCghefe.....vlqsisdaplta.CPeCgsevr 37 
                  P +   C++C +++       lq+ s    t  CP Cgs+vr
   CCE28752.1 914 PCFHVVCRNCYQTYHerarqLLQPGS---STGpCPVCGSHVR 952
                  667778****9999978666666665...5556******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 8157.11
//
Query:       CCE28753.1  [L=915]
Description: related to gamma-tubulin complex component [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-62  211.8   1.6    1.5e-62  211.8   1.6    2.1  3  GCP_C_terminal  Gamma tubulin complex component C-terminal
    2.3e-61  208.1   0.0    5.5e-61  206.9   0.0    1.6  1  GCP_N_terminal  Gamma tubulin complex component N-terminal


Domain annotation for each model (and alignments):
>> GCP_C_terminal  Gamma tubulin complex component C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0      0.87   7.8e+03     261     286 ..      62      87 ..      39      97 .. 0.69
   2 ?   -1.5   0.3      0.15   1.3e+03     229     300 ..     232     307 ..     219     311 .. 0.55
   3 !  211.8   1.6   1.7e-66   1.5e-62       1     304 [.     519     898 ..     519     901 .. 0.89

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.87
  GCP_C_terminal 261 kleerleelekeFrkkvslllkvlra 286
                     + +++ +  e++F+++v ++l++  +
      CCE28753.1  62 RRHDERRVTERTFEAHVDKMLRMTTS 87 
                     33467778899999999999987744 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.15
  GCP_C_terminal 229 elileFakvldgly..lsvselt.......aeeaeeeeleekleerleelekeFrkkvslllkvlralkeqeededlrqLl 300
                     +++  +a +l+ +   +s++e+        a   + +++ +++  ++ +le++F +  s+ ++vl+ ++ ++ ++ ++qL 
      CCE28753.1 232 KMATYYA-ALEAFVdiQSRAEFGsvnhalcA---SIRKFLQDYLIMIAQLETQFLTSDSFTVHVLNIHTIST-SQMMHQLY 307
                     4444443.34444433444443354443221...22233344778899999999999999999996653333.56777765 PP

  == domain 3  score: 211.8 bits;  conditional E-value: 1.7e-66
  GCP_C_terminal   1 LlehLkllkrylLlgqgdFisrLldalfdelwkpasselrlaLtslLeeairssna.qqsdelkddlsfaldlpevleeldakldpds....... 87 
                     L ++L++lk+y++l+ +d++s +l++ ++el kp +s    +L+slL++++r+  +  + d++k+d+++++++ +++++l++ ++ ++       
      CCE28753.1 519 LPARLQSLKHYFFLDPSDYFSYFLELGSSELRKPIKSVNTNKLQSLLDLVLRQPGSiVSLDPFKEDVKVEMNDVTLIKSLQRVVNITGieqgeal 613
                     5689*********************************88889**********98776669***********99999****97779988******* PP

  GCP_C_terminal  88 .............legldfltLeYkvpwplslvitpealekYqriFrfLlrvkrvefalsslw..krrkatgarsvl........lkra.rllrq 158
                                   +g+  l+L+Y vp p+slvi+++++ +Yq +Fr+Ll ++ +e++ls++w  ++r  + a+  +        +kr  ++lr+
      CCE28753.1 614 qplsnqpvendknATGFTSLQLDYAVPFPVSLVISRRTVWRYQALFRYLLSLRFLESQLSTTWqtQTRGIAWAH--KgpnrgleiWKRRaWTLRA 706
                     **********99888*********************************************99*65444444444..13357778866555***** PP

  GCP_C_terminal 159 emlhfvsqlqyYvldeviessWreleeklkke..........atdldelieaHeafLdsilkkclLrskkkllklleeilelileFakvldglyl 243
                     +ml fv+ql y++++evie++W +++++l+++          + ++del++ H +fLd++lk+c+L+++ kll++ +++++++  Fa+ ++   +
      CCE28753.1 707 RMLVFVQQLLYFCTSEVIEPNWTKFMSRLSTRdgeevggrpaR-TVDELMQDHVDFLDTCLKECMLTNS-KLLRIHSKLMQTCTIFAHYTN---W 796
                     *****************************65658888888844.6************************.****************98654...5 PP

  GCP_C_terminal 244 svselt...........................................aeeaeeeeleekleerleelekeFrkkvslllkvlralkeqeeded 295
                      ++el+                                           a++++e++l++ l+e +++ e++F +++++ll++l++++++e ++ 
      CCE28753.1 797 LTRELEkadpdlsaankpntmtsdqwkrfqattknggaaaaaaaqqdasAASNTEARLKN-LSEIIRKWENNFGRHLQILLDALNHYAATE-TVV 889
                     55555555689*********************************9998766666667766.99*********************9998888.999 PP

  GCP_C_terminal 296 lrqLllrLd 304
                     l +L+ rL 
      CCE28753.1 890 LLSLCARLS 898
                     999999996 PP

>> GCP_N_terminal  Gamma tubulin complex component N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.9   0.0   6.1e-65   5.5e-61       1     304 [.     178     514 ..     178     515 .. 0.88

  Alignments for each domain:
  == domain 1  score: 206.9 bits;  conditional E-value: 6.1e-65
  GCP_N_terminal   1 lrdllylLqGisgklirfdekdd......ervvkdvrl.pgllppslrslverllelgtlyrrlrkfveevsrsesglvlqalaaaldeelteyy 88 
                     ++dll++++G++g++ir+ +  d        + +++r+ pgl +psl +l +++l+++t+y  l++fv+  sr e+g v++al+a+++++l++y+
      CCE28753.1 178 VEDLLFVFMGYEGQYIRYAKGYDpaeerdRLTGPSFRIlPGL-DPSLADLAQSMLKMATYYAALEAFVDIQSRAEFGSVNHALCASIRKFLQDYL 271
                     68***************8443333344556677777777888.**************************************************** PP

  GCP_N_terminal  89 rliaqlEsqlledsesiltLlrlevwlqetllllrvLanlveeve.........................................kanlkggal 142
                      +iaqlE+q+l++++  +t++ l  ++ +t + ++ L+ l++e                                           k+ +kgg +
      CCE28753.1 272 IMIAQLETQFLTSDS--FTVHVLNIHTISTSQMMHQLYLLAHELLkkngilddesdededvelenpddiierlreggdllpgnmasKKICKGGVV 364
                     **************9..*************************999788888888888888888888888888888888877777665556***** PP

  GCP_N_terminal 143 lsllhe..aaqhgdpkvrkllsellervsrpflemlekWileGelsDpynEfFveenesvakeklkeddseklweekYtlrkemlPsflseelae 235
                     l l+ +  ++ +gdp++r ll++ll+++srp++ ml+ W+ +G ++D ++Ef++ee +s+ +e+lk+d+ +++w+ +Yt+r + +P  l++ + e
      CCE28753.1 365 LGLITRrlQTMSGDPAARALLTSLLRDASRPYMVMLNEWLHHGSIKDRHSEFLIEERRSIGREQLKQDYTDDYWDRRYTIRDKDVPPQLEA-VKE 458
                     ******88888********************************************************************************.*** PP

  GCP_N_terminal 236 kIletGkslnflrescgdsewiekteseekel.eyiddleelssslslsleelidsayklaskrllelLf 304
                     k+l++Gk+ln++re++g  + + k +s    + + +dd+         ++ e ++ ay +a+ +l++lL+
      CCE28753.1 459 KVLLAGKYLNVVRECGG-VD-VSKVAS---DVpTTFDDA---------RFLENVNHAYAHANASLMQLLL 514
                     **************844.34.443333...110224545.........5*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 6481.30
//
Query:       CCE28754.1  [L=209]
Description: probable 20S proteasome subunit (alpha5) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-47  161.0   0.0    3.4e-47  160.4   0.0    1.2  1  Proteasome      Proteasome subunit
    1.6e-12   46.8   0.0    2.9e-12   46.0   0.0    1.5  1  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.4   0.0   3.8e-51   3.4e-47       1     156 [.      31     189 ..      31     194 .. 0.94

  Alignments for each domain:
  == domain 1  score: 160.4 bits;  conditional E-value: 3.8e-51
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 +k G+t++G+++++gv+l+++kr+t  s+ll++s+veKi +id+hig+a++Gl+aDar ++++ar+e+q++ ++y++ + ve +++++++++++    +
  CCE28754.1  31 IKLGSTAIGVATSEGVILGVEKRVT--STLLETSSVEKIVEIDRHIGCAMSGLQADARSMIEHARVECQTHAFNYNESLGVESCTQAICDLALRFGEGA 127
                 589**********************..******************************************************************998855 PP

                 .......TTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHST CS
  Proteasome 100 .......grrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeyke 156
                          rpfgv+lliag+de+g p+L++ +psG++++++ a aiGsgse a++ l++ey++
  CCE28754.1 128 dgeeetiMSRPFGVALLIAGFDEKG-PQLFHAEPSGTFYQYD-AKAIGSGSEGAQAELQNEYHK 189
                 555556688*************998.***************6.*******************76 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   3.3e-16   2.9e-12       1      23 []       8      30 ..       8      30 .. 0.98

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 3.3e-16
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YDr ++tFSP+GRLfQVEY ++A
      CCE28754.1  8 YDRGINTFSPEGRLFQVEYSLEA 30
                    ********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1630.38
//
Query:       CCE28755.1  [L=731]
Description: uncharacterized protein CPUR_02443 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-19   70.7   0.1    1.9e-10   40.1   0.0    2.2  2  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.1e-14   1.9e-10       2     131 ..     138     277 ..     137     306 .. 0.92
   2 !   28.4   0.0   3.9e-11     7e-07     145     340 ..     360     635 ..     317     654 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.1e-14
  Fungal_trans_2   2 lldyyldnvapllspvpes.................snpfrkvllplalsnkallhallalsafhlqskgpkdslereakrykslalkelqeala 79 
                     +++++++ + p++s + +                  +n +  ++  l l++++l+ha++a+++++ +++++       a+r++  ++++  +  +
      CCE28755.1 138 IFMHFVNVTGPTMSLYERDprsltarsrfdgdasldKNLWSYTIPLLSLNHPGLFHAIMAVGSLQIATLQSTP--AIAALRHYHYSIRRNARNVS 230
                     579999999999999999999999999999999999*********************************9999..89************999999 PP

  Fungal_trans_2  80 elsstlsrnekykdiLaaiLllcsieissgdvsdwrvhLeaatsliksrggs 131
                     ++ ++++      +++a++L+l  +e+ s+d ++w  hL + + l+k+  ++
      CCE28755.1 231 TPMRNTK-----PTTVATTLILAYFEVWSSDHTKWCNHLLGGRLLFKQIPLR 277
                     9999999.....9*********************************998777 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 3.9e-11
  Fungal_trans_2 145 llrifayldilssttlgrgpsfpseeyekllenkkeesdsgldplmGcsnslilliseisrLarekrsarkd....................... 216
                     l  ++a +d+ +s   g+++ +++ee+++   +      s+ld ++G  ++lill++++++ a++  s++ +                       
      CCE28755.1 360 LFWWYAKMDVYQSMLGGTKLFMEYEEWTQCPPR---APLSSLDAIYGTYDHLILLLGRLASFASKDLSRKRKefrskgggsfkggsspsqfpgiv 451
                     556999**************************9...999********************986655555554455555****************** PP

  Fungal_trans_2 217 ....................................seleplsileeaseleqrll.swkprssdlepdldeterassls...kdl..telfrla 269
                                                          e++ + i++  +++e+ l+ ++kp ss + +++d t + ++l+   +++      ++ 
      CCE28755.1 452 ptlgrfhapmgfaasttyfddsdspgdtaspesnemAEQTWEGIRQAFETFENHLDaRFKPLSSEFAERRD-TPFGTALQfrtYSVagIWMNYYM 545
                     ****************************9999998888888899999999999999888888877755555.4555555568877755555799* PP

  Fungal_trans_2 270 aliylyrlvlglpps...............spevqelvkkllellellp..sspvaiasLl...WplFiaGceavdeddRdfvrrrleele 340
                      li+lyr+ +++pp                   +  + + l++ l++++  s+++  a L+   ++lF+a++ ++d+++R +v +r+ ++ 
      CCE28755.1 546 GLIHLYRSRPNMPPAamqaagmaapstagyAIQIGRIAAGLTDDLSSKRdiSTTL-AAALIessFCLFVAAVQLQDNSQRCWVIQRVFDVV 635
                     ***********************66664433333344444444444444433333.55555999****************99999876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 5556.61
//
Query:       CCE28756.1  [L=545]
Description: related to methyltransferase involved in pre-rRNA cleavage [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-60  202.7   0.1    4.9e-57  193.3   0.0    3.1  3  Methyltransf_8   Hypothetical methyltransferase
     0.0001   22.9   0.0    0.00052   20.6   0.0    2.3  2  Methyltransf_11  Methyltransferase domain
    0.00095   19.8   0.0      0.036   14.7   0.0    2.8  2  Methyltransf_25  Methyltransferase domain
     0.0084   15.7   0.0       0.51    9.9   0.0    2.3  2  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
       0.01   15.8   2.0      0.077   13.0   0.0    2.5  2  Methyltransf_32  Methyltransferase domain
      0.043   12.7   8.2      0.061   12.2   8.2    1.2  1  Apt1             Golgi-body localisation protein domain
       0.13   10.9   0.0       0.23   10.2   0.0    1.3  1  tRNA-synt_1g     tRNA synthetases class I (M)
        2.9    6.6  10.9        5.2    5.7  10.9    1.4  1  Tim54            Inner membrane protein import complex subuni
          3    6.5   8.0          5    5.8   8.0    1.4  1  Raftlin          Raftlin
          4    5.6  10.4        6.6    4.9  10.4    1.3  1  CDC45            CDC45-like protein
        5.3    5.7   7.7        7.2    5.3   7.7    1.2  1  SAPS             SIT4 phosphatase-associated protein
        9.6    5.0   8.1         16    4.2   8.1    1.2  1  DUF4554          Domain of unknown function (DUF4554)
        9.9    3.1  12.0         13    2.8  12.0    1.0  1  GREB1            Gene regulated by oestrogen in breast cancer


Domain annotation for each model (and alignments):
>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.3   0.0   3.5e-60   4.9e-57       2     167 ..     202     398 ..     201     422 .. 0.92
   2 ?    4.7   0.1     0.017        23     160     199 ..     447     491 ..     440     514 .. 0.79
   3 ?    0.4   0.0      0.35   4.9e+02     198     219 .]     524     545 .]     503     545 .] 0.73

  Alignments for each domain:
  == domain 1  score: 193.3 bits;  conditional E-value: 3.5e-60
                     XXXXX-HHHHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC..........................TS CS
  Methyltransf_8   2 leakikkrldgarfrflneklytgesskavdlfkedpeafdlyhkgfrsqvkkWPenPldviirklk..........................kk 70 
                     l+a ++++l +arfr+lne lyt +s +a+dlf++ pe+fd yh+gfr qvk WPenP+d ++ +++                          + 
      CCE28756.1 202 LQASMREKLISARFRHLNETLYTKPSAEAFDLFQDSPEMFDEYHDGFRRQVKVWPENPVDSFLSDIRtrakarqppkgrpgpppsqrtkmalpRT 296
                     7899****************************************************************************************999 PP

                     -TTS-EEEES-TT-HHH.....HH--S-..EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG CS
  Methyltransf_8  71 kdnlvvadlGcGeakia.....eavrekekvrsfdlvavnervvacdlakvPledesvdvavfclslmgtnladflkeanrvlkvGGllkvaevk 160
                      +  ++adlGcG+a++a     e+ +   +++sfdl+++ + v+  d+a++Pled+sv+va+fcl+lmgtn+ df++ea+r+l+  G l++ae+k
      CCE28756.1 297 TGTCTIADLGCGDARLAaslqkESSKLRLDIKSFDLQSPSPLVTKADIANLPLEDGSVNVAIFCLALMGTNWIDFIEEAYRILHWKGELWIAEIK 391
                     99***************54332222334579**************************************************************** PP

                     GG-S-HH CS
  Methyltransf_8 161 srfesvk 167
                     srf   +
      CCE28756.1 392 SRFGPAR 398
                     ***7555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.017
                     GGG-S-HHHHHHHHHCTTE.....EEEEEE--STTEEEEEEEE-S CS
  Methyltransf_8 160 ksrfesvklfaraltklGf.....evkskdlsnkqfvlfefkkve 199
                     + r ++v  f++al+k Gf       + +dlsn +fv ++f k  
      CCE28756.1 447 RRRETDVTAFIEALQKRGFvlqgeRAEAVDLSNRMFVKMHFLKGA 491
                     5577899***********944433356899**********99865 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.35
                     -SSS-TT---GG--------XX CS
  Methyltransf_8 198 vekkgkkrelglklkpclykkr 219
                      e ++k ++   +lkpc+yk r
      CCE28756.1 524 KEGEEKVDNEASILKPCVYKIR 545
                     4556677778899*******76 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.8e-07   0.00052       2      95 ..     304     386 ..     303     387 .. 0.82
   2 ?   -3.1   0.0       9.7   1.3e+04      17      31 ..     468     482 ..     456     501 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.8e-07
                      EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGllv 95 
                      d+GcG  rla+ l+k   + + +D+    l     + s+++l   + +ad+ +lp+ed+s+ + +   +l+   ++ ++++e++R+L   G l 
       CCE28756.1 304 DLGCGDARLAASLQKES-SKLRLDIKSFDL-----Q-SPSPL---VTKADIANLPLEDGSVNVAIFCLALMGT-NWIDFIEEAYRILHWKGELW 386
                      89999999999999666.677788655555.....2.23333...489************************9.6************9999876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.7
                      TTSEEEEEES-HHHH CS
  Methyltransf_11  17 rgarvvgvDlskeml 31 
                      +g+r  +vDls++m 
       CCE28756.1 468 QGERAEAVDLSNRMF 482
                      447888899999886 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.6e-05     0.036       1      97 []     302     383 ..     302     383 .. 0.79
   2 ?   -2.6   0.0       6.8   9.4e+03      22      37 ..     470     485 ..     456     506 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.6e-05
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      + dlGcG  rl++ l+k+   ++ + +Di +  l+              + ++d+ +lp+edgs+++ + + a  ++   ++ ++++e++r+L 
       CCE28756.1 302 IADLGCGDARLAASLQKE---SSKLRLDIKSFDLQSPSP---------LVTKADIANLPLEDGSVNVAIFCLA--LMG-TNWIDFIEEAYRILH 380
                      679999999999999988...567777877766665444.........4589***************999655..443.56899********97 PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                       +G
       CCE28756.1 381 WKG 383
                      665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.8
                      SEEEEEESSHHHHHHH CS
  Methyltransf_25  22 akvtgvDiseemleaa 37 
                      ++  +vD+s +m  ++
       CCE28756.1 470 ERAEAVDLSNRMFVKM 485
                      6777899999997655 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00037      0.51      33      61 ..     300     328 ..     290     352 .. 0.83
   2 ?    3.3   0.0     0.038        52     120     138 ..     370     388 ..     363     417 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00037
                 SEEEEET-TTSHHHHHHHHHTTC.EEEEE CS
         MTS  33 gkvlDlGcGaGvlgaalakespeaevtlv 61 
                  +++DlGcG   l+a+l+kes+++++++ 
  CCE28756.1 300 CTIADLGCGDARLAASLQKESSKLRLDIK 328
                 469*******************9997664 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.038
                 HHHHHHHHHEEEEEEEEEE CS
         MTS 120 eliaeAkeaLkegGeLliV 138
                 ++i+eA ++L+ +GeL+i 
  CCE28756.1 370 DFIEEAYRILHWKGELWIA 388
                 79***************94 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   3.1       1.3   1.8e+03      72     103 ..     124     155 ..      87     185 .. 0.45
   2 ?   13.0   0.0   5.6e-05     0.077      22      61 ..     295     334 ..     287     348 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.3
  Methyltransf_32  72 eklgkkfnkrlsfaelsieeatssktltkkve 103
                      +k  +k ++ ls+ + +++e+++sk+++ + +
       CCE28756.1 124 KKNDNKGSEALSKPQDKNAENQDSKREKPHGK 155
                      11111122333333333333333333333333 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 5.6e-05
  Methyltransf_32  22 kesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidake 61 
                      +++g +t++D+G+G + L+  l+ ++++++l + ++d+++
       CCE28756.1 295 RTTGTCTIADLGCGDARLAASLQKESSKLRLDIKSFDLQS 334
                      57899*******************7777999999999886 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   8.2   4.4e-05     0.061     313     448 ..     105     335 ..      75     337 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.4e-05
        Apt1 313 s........seeddesdeesessssssssssssassssssssrssslelrlkptsstssssssessssssskkrsseesslessaserv........ks 395
                 s        +     s+++++++ +++ ++ s+a s+ ++++ +++ ++r+kp ++++++++++ s+s  sk++s+ +ssl+  +  ++        + 
  CCE28756.1 105 StpstaltpE-----SKKSKKNKDKKNDNKGSEALSKPQDKNAENQDSKREKPHGKKGQKNEEQASTSDESKQPSNASSSLKPDSAAQSslppaappS- 197
                 1333222111.....11111111111122222222222222222222333334455555555555555555555555555544444333333333330. PP

        Apt1 396 sr......................................................................................asddleemksR 408
                  +                                                                                      +s+  +    R
  CCE28756.1 198 -KltplqasmreklisarfrhlnetlytkpsaeafdlfqdspemfdeyhdgfrrqvkvwpenpvdsflsdirtrakarqppkgrpgppPSQRTKMALPR 295
                 .03344444555666666777777778888888888888888888888888888888888888777777777777777777777777555555555667 PP

        Apt1 409 askymtfayikipsvvlclSYkgkkeknledvhdlvfrlP 448
                    + t+a++   +  l  S +++++k  +d++ + ++ P
  CCE28756.1 296 TTGTCTIADLGCGDARLAASLQKESSKLRLDIKSFDLQSP 335
                 7777777777777777777777777777777777777666 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00017      0.23      92     169 ..     445     521 ..     410     537 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00017
                   TSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-EE........-TTS-EE-TTSSB-E......... CS
  tRNA-synt_1g  92 tseehkelvqeifkklkekgliyekeieqlycpkderflpdryvegtCPkckseeargdqceecgkkleptelinpks 169
                   ++++ +  v +++++l+++g++ ++e + + + ++ +f    +++g  P+ + +  ++d   ++g+ l+ + +  pk 
    CCE28756.1 445 EDRRRETDVTAFIEALQKRGFVLQGERAEAVDLSNRMFVKMHFLKGASPTKG-KGVQADGDRTQGQLLKNKRVFAPKW 521
                   45566677899**************************************755.4444444456788888888777765 PP

>> Tim54  Inner membrane protein import complex subunit Tim54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  10.9    0.0038       5.2     191     275 ..     115     202 ..      87     218 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0038
       Tim54 191 dkpeepeeeeaeeeeeeeeeekeeeeeee...............eeeeeekeeekeeekeeeeeeeekekkkkvpkpyispedYasaelppeiPell.q 273
                 +k ++++++++++++                             ++++e+ + +k +++ee+++  +++k+++  ++ ++p++ a+++lpp  P +  +
  CCE28756.1 115 SKKSKKNKDKKNDNK-------------GsealskpqdknaenqDSKREKPHGKKGQKNEEQASTSDESKQPSNASSSLKPDSAAQSSLPPAAPPSKlT 200
                 222222222222221.............02222222222221112222222222222333333344444455566669999999999999997754326 PP

       Tim54 274 pv 275
                 p+
  CCE28756.1 201 PL 202
                 55 PP

>> Raftlin  Raftlin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   8.0    0.0036         5     169     258 ..     103     178 ..      32     237 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0036
     Raftlin 169 sksansssltsgaaeseeardekkkrsssedkvslenekpgalsgksseagaeeeaeseegkkgegpaaeqlqlssaeeegsespskskk 258
                 ++s+ s++lt+++++s++++d+k+ ++                ++ s++++++ e + ++ +k +g+++++ ++++ +++ s++ps++ +
  CCE28756.1 103 ENSTPSTALTPESKKSKKNKDKKNDNKG--------------SEALSKPQDKNAENQDSKREKPHGKKGQKNEEQASTSDESKQPSNASS 178
                 2222222222222222222222222222..............222222222222222222222222222222222222222222222222 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  10.4    0.0048       6.6     110     195 ..      93     175 ..      83     229 .. 0.50

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0048
       CDC45 110 gdieeeleeereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrse 195
                    ++++++e+++  +    +es+++++++++++d++ +e  ++ +d++ e++d++++k + k+ +++e   ++++++ ++++ s+
  CCE28756.1  93 AASAKRMKKEENSTPSTALTPESKKSKKNKDKKNDNKGSEALSKPQDKNAENQDSKREKPHGKKGQKNE---EQASTSDESKQPSN 175
                 445677788777777777777776444333333333333333333333333333322222222222222...22222222333232 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   7.7    0.0052       7.2     272     336 ..      95     175 ..      12     215 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0052
        SAPS 272 s................deaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdasseesalae 336
                 s                + +sk++++++++++d++ + +l++ +++++en++s+ ++ + ++ +++e++ ++s+e++ +++
  CCE28756.1  95 SakrmkkeenstpstalTPESKKSKKNKDKKNDNKGSEALSKPQDKNAENQDSKREKPHGKKGQKNEEQASTSDESKQPSN 175
                 033223333345555555555555555555555555555555555555555555555555555555554444444444333 PP

>> DUF4554  Domain of unknown function (DUF4554)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   8.1     0.012        16     342     415 ..     110     186 ..     102     218 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.012
     DUF4554 342 qltpekkdsaqntedahensslella.etsgqaenkrlkrgslr..qgveetralrsaralspseaaarraeptaas 415
                  ltpe k+s++n + +++n+  e l+    ++aen+  kr +++  +g+++ +   ++ + +++  a+  ++p +a+
  CCE28756.1 110 ALTPESKKSKKNKDKKNDNKGSEALSkPQDKNAENQDSKREKPHgkKGQKNEEQASTSDESKQPSNASSSLKPDSAA 186
                 689*********99999999887666266788999999988876324555555455555555666666666666554 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  12.0    0.0091        13    1144    1267 ..      76     200 ..      13     214 .. 0.53

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.0091
       GREB1 1144 pvkvekseskdavesglsskasakselse..asaaaasaseeakspkasvtseeeeseeskekekesls.ketesqlsleaseqkealdakasskss 1237
                   +k + + ++  v +g  ++a+  ++ ++  +s+a +++s+++k++k++ +++++ s e+ +k ++++  ++ +++ + +  + +++ ++ ++s +s
  CCE28756.1   76 GKKGQAEGNHPGVGNGDAASAKRMKKEENstPSTALTPESKKSKKNKDK-KNDNKGS-EALSKPQDKNAeNQDSKREKPHGKKGQKNEEQASTSDES 170 
                  3344444444444444443333333322211344444444444444433.2333322.333333333320233333333334444444556677777 PP

       GREB1 1238 ssssssssassPssscslakavkrPpivll 1267
                  ++ s +ss+ +P+s+++++ +  +Pp+ l 
  CCE28756.1  171 KQPSNASSSLKPDSAAQSSLPPAAPPSKLT 200 
                  778888888889888888888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1469  (0.0819343); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                       120  (0.00669307); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.44
# Mc/sec: 3747.65
//
Query:       CCE28757.1  [L=432]
Description: related to SNARE binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-57  191.1   0.1      7e-57  190.6   0.1    1.2  1  Asp_protease     Aspartyl protease
    8.3e-24   84.0   0.2    4.6e-23   81.6   0.1    2.2  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease
    2.7e-11   43.9   2.6    4.2e-11   43.4   0.1    2.5  3  Asp_protease_2   Aspartyl protease
    4.5e-06   26.5   0.2    9.5e-06   25.4   0.2    1.5  1  UBA              UBA/TS-N domain
    4.5e-06   26.3   0.0    1.2e-05   25.0   0.0    1.7  2  ubiquitin        Ubiquitin family
    0.00015   22.0   0.0     0.0004   20.6   0.0    1.7  1  RVP              Retroviral aspartyl protease
     0.0084   15.9   0.0      0.015   15.0   0.0    1.4  1  RVP_2            Retroviral aspartyl protease
  ------ inclusion threshold ------
      0.081   12.8   0.1       0.18   11.7   0.1    1.5  1  UBA_4            UBA-like domain


Domain annotation for each model (and alignments):
>> Asp_protease  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   0.1   3.1e-60     7e-57       1     124 []     172     295 ..     172     295 .. 0.99

  Alignments for each domain:
  == domain 1  score: 190.6 bits;  conditional E-value: 3.1e-60
  Asp_protease   1 qeaveenlekalehtPeafvkvtmlyinvevngvkvkafvdsGaqksilskkcaercglmrlldtrfkgiakGvGtkkilGrvhsaevklgdlflpv 97 
                   qe+v enl++a+eh+Pe+f++v++lyi+vevng+ vka+vdsGaq++i+s++ ae cg+mrl+dtrf+g+a+GvGt+kilGrvhsa++k+g+lflp+
    CCE28757.1 172 QERVMENLQNAMEHNPEVFGRVHLLYIDVEVNGHRVKALVDSGAQATIMSPAYAEDCGIMRLIDTRFAGVARGVGTAKILGRVHSAQIKVGNLFLPC 268
                   689********************************************************************************************** PP

  Asp_protease  98 alsvledkevdlllGldllkrhqviid 124
                   +++v+e+k+  lllGld+lkr+q++id
    CCE28757.1 269 SFTVMEGKSTHLLLGLDMLKRYQATID 295
                   *************************98 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.1     2e-26   4.6e-23       1      92 []     198     289 ..     198     289 .. 0.95
   2 ?   -0.6   0.0      0.91     2e+03      48      80 ..     389     422 ..     357     431 .. 0.68

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 2e-26
                      EEEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTST.T-EEEEEEEEEE.EETTEEEEEEEEEESSSSEEEEHHHHHH CS
  gag-asp_proteas   1 vkvkingkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangev.eakrvrldsvkiggielrnvsavvlegelddlLLGldfLkr 92 
                      ++v++ng++vk+lvD+GA+ ti+s++ ae +g++r++d++ + v+++ g++   +rv+ +++k+g++ l  +s++v+eg+ ++lLLGld+Lkr
       CCE28757.1 198 IDVEVNGHRVKALVDSGAQATIMSPAYAEDCGIMRLIDTRFAGVARGVGTAkILGRVHSAQIKVGNLFLP-CSFTVMEGKSTHLLLGLDMLKR 289
                      79************************************99999999999983459**************8.9*******************98 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.91
                      TTSTT-EEEEEEE.EEE.EETTEEEEEEEEEESS CS
  gag-asp_proteas  48 ngeveakrvrlds.vkiggielrnvsavvlegel 80 
                      +  v+++++++ds v +g  + + v+a+ + +++
       CCE28757.1 389 DAAVRVTPAHIDSlVAMGATREQAVQALQAAEDN 422
                      3356778888887457788888888887776665 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.1     7e+03      25      58 ..      66      99 ..      65     102 .. 0.74
   2 !   43.4   0.1   1.9e-14   4.2e-11       1      89 [.     198     285 ..     198     286 .. 0.92
   3 ?   -0.9   0.1       1.2   2.6e+03      25      73 ..     356     404 ..     349     425 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.1
  Asp_protease_2 25 pelaeklglkvreseltvrvsgaggevkarlvrl 58
                    p++a ++  + ++++ +++ s agg +  +l+rl
      CCE28757.1 66 PTAASAASASAQAQPPQQSRSQAGGVNDPELIRL 99
                    6677777888888886777788899888888877 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 1.9e-14
  Asp_protease_2   1 vpvtinGkpvrfllDTGasttlispelaeklgl.kvreseltvrvsgaggevkarlvrldslklggltlknvpalvldlgeeidglLGmd 89 
                     ++v++nG++v++l+D+Ga++t++sp++ae++g+ +  ++++  +++g+g ++   +v+  ++k+g+l l    ++v++ g+++++lLG+d
      CCE28757.1 198 IDVEVNGHRVKALVDSGAQATIMSPAYAEDCGImRLIDTRFAGVARGVGTAKILGRVHSAQIKVGNLFL-PCSFTVME-GKSTHLLLGLD 285
                     689*****************************9666788889999999999999999999******999.59******.99*******98 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.2
  Asp_protease_2  25 pelaeklglkvreseltvrvsgaggevkarlvrldslklggltlknvpa 73 
                     +++a + + ++r+ ++t ++++a  + +   +    +++ +++++++ a
      CCE28757.1 356 RSTASSSQAPPRTHPTTSVSTSAPSSASLPSGSDAAVRVTPAHIDSLVA 404
                     5666666666666654444444444455555555556666655555544 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.2   4.2e-09   9.5e-06       4      34 ..     397     427 ..     394     428 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 4.2e-09
                 HHHHHHHHTTS-HHHHHHHHHHTTTSHHHHH CS
         UBA   4 eaiqrLveMGFdreevveALratgnNeErAv 34 
                 + i+ Lv+MG +re++v+AL a+  N++ A+
  CCE28757.1 397 AHIDSLVAMGATREQAVQALQAAEDNVDVAA 427
                 7899*******************99999885 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   5.3e-09   1.2e-05      22      70 ..       4      53 ..       2      55 .. 0.95
   2 ?   -3.0   0.0       2.9   6.5e+03      34      48 ..     294     308 ..     289     309 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 5.3e-09
                HHHHHHHHHHHTSSGGGEEEEETTEEE.-TTSBHGGHTTSTTEEEEEEES CS
   ubiquitin 22 eelKekiaekegipaeqqrLiysGkvL.edertleeygiqdgstlhlvlr 70
                e+l + i+++++ipa ++ ++++G++L +d +t+e++ ++dg  l +++r
  CCE28757.1  4 ETLRASIHAETNIPATSLHIYHNGRLLtDDTKTMEQLEVTDGGMLAVHVR 53
                7899**************************************99999987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.9
                 SSGGGEEEEETTEEE CS
   ubiquitin  34 ipaeqqrLiysGkvL 48 
                 i  ++ rLi +G+++
  CCE28757.1 294 IDLSRDRLIIQGEEI 308
                 667889999999876 PP

>> RVP  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.8e-07    0.0004       7     100 ..     198     294 ..     196     295 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.8e-07
                 EEEEETTEEEEEEE-TTBSSEEEES---SCE....EEEEEEEETTEEEEEEEEEEEEEEETT..EEEEE..EEEESTTSSSE....EE-HHHHCCCT-E CS
         RVP   7 lkvkiggkyieallDtGAdatviseedwPenwpvkkaetllqGiggatevqqskaievllie..ekfrgevsplilpalpvn....ilGrdlLqqlgvr 99 
                 + v ++g++++al+D+GA+at++s  +       +  +t + G+  +  ++ +  + +  +    +   + s+ ++ +   +    +lG d+L+  +++
  CCE28757.1 198 IDVEVNGHRVKALVDSGAQATIMSPAYAEDCGIMRLIDTRFAGVARGVGTAKILGRVHSAQIkvGNLFLPCSFTVMEG---KsthlLLGLDMLKRYQAT 293
                 6799*******************9988876655599999999999999888776633332220023333444444444...133469999999999887 PP

                 E CS
         RVP 100 L 100
                 +
  CCE28757.1 294 I 294
                 6 PP

>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.9e-06     0.015      26     131 ..     200     304 ..     171     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.9e-06
       RVP_2  26 flvnsipatvLfdsGasHsFiskafvsklklkveaLstpll.ietPvgssvtakeicksveieiqgiefladlilLdlkdlDviLgmdWLsknkanidc 123
                 + vn+   + L dsGa    +s a+++  ++    ++t++  +   vg   ++    +s +i++ +  ++    +++ k+  ++Lg+d L +++a+id 
  CCE28757.1 200 VEVNGHRVKALVDSGAQATIMSPAYAEDCGIMR-LIDTRFAgVARGVGTAKIL-GRVHSAQIKVGNLFLPCSFTVMEGKSTHLLLGLDMLKRYQATIDL 296
                 5689999999*****************999975.4555554266666655554.446899*************************************** PP

       RVP_2 124 aekkvtlt 131
                  + +++++
  CCE28757.1 297 SRDRLIIQ 304
                 99988876 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   7.8e-05      0.18      12      37 ..     406     431 ..     403     431 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.8e-05
       UBA_4  12 GadeekArqlLeannWdLerAislyF 37 
                 Ga++e+A+q L+a+  +++ A+ l F
  CCE28757.1 406 GATREQAVQALQAAEDNVDVAAGLIF 431
                 99*******************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3229.66
//
Query:       CCE28758.1  [L=219]
Description: related to acetyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-06   27.0   0.0    6.3e-06   26.4   0.0    1.6  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.3e-05   25.1   0.0    1.9e-05   24.6   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.022   15.2   0.0    1.5  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.1e-09   6.3e-06      56     117 .]     134     193 ..      22     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.1e-09
                     TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTE.SEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  56 ekggvayieslaVspeyrgkGlGsaLlealeerareegi.kkivlaveedndaairlYeklGF 117
                      +g+++ ++s+ V pe +g GlG+  ++a+++ +++ ++ ++i l + ++    + ++ k+GF
      CCE28758.1 134 VSGRTICLHSFSVCPEVQGVGLGKSAMKAYVQLMKQSEVaDRISLICKKPL---VTFFSKVGF 193
                     56788999*****************************999****9887777...999999999 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   3.2e-09   1.9e-05      53     123 ..     140     211 ..     124     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.2e-09
  Acetyltransf_10  53 hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkav.geeqeenGirfvpM 123
                       ++ + V pe +g G+gk+ ++a+ + +++ + + ++++  ++  v f+ k+GF+a  ++e++ +G  +++M
       CCE28758.1 140 CLHSFSVCPEVQGVGLGKSAMKAYVQLMKQSEVADRISLICKKPLVTFFSKVGFEAAgKSETTISGPDWYNM 211
                      567889**********************8887777**********************889999999888888 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   3.6e-06     0.022      26      75 ..     140     194 ..     102     195 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.6e-06
                     CTEEEEE-GGGTTSSHHHHHHHH.....TTSEEEEEEEEETHH.......HHHHHHHHTTEE CS
  Acetyltransf_7  26 eitrlaVdpeyrgkGiGraLlea.....aekgiileqlelnae.......kaikfYeklGFe 75 
                     +++ + V pe +g G+G+  ++a     +       q+e++++       + + f+ k GFe
      CCE28758.1 140 CLHSFSVCPEVQGVGLGKSAMKAyvqlmK-------QSEVADRislickkPLVTFFSKVGFE 194
                     344499****************7444331.......333322122223224477*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1758.83
//
Query:       CCE28759.1  [L=233]
Description: probable orotate phosphoribosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-13   50.0   0.2    3.2e-13   49.5   0.2    1.2  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
       0.14   11.6   0.0        0.2   11.1   0.0    1.2  1  UPRTase       Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.2   3.6e-17   3.2e-13      10     131 ..      51     172 ..      40     181 .. 0.87

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 3.6e-17
                   -EEEEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHS.........TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEE CS
  Pribosyltran  10 aildavarlaaeileeyngkpdvvvgiargGvpfakiladeL.........evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDil 97 
                   ai+ a a+ + ++ ++ n   dvv+g+a++G+p+ +++  ++         ++ + + rk+ ++++ +++++          + +agkkVliVDD++
    CCE28759.1  51 AIASAFAKTIIDAQQNQNLDFDVVFGPAYKGIPLCSAITIKIgelapqnldTLSYSFDRKEAKDHGEGGNIV---------GSPLAGKKVLIVDDVI 138
                   3444555556666666888899****************************9999*****************6.........6779************ PP

                   SSSHHHHHHHHHHHCC-BSEEEEEEEEE-HHHHH CS
  Pribosyltran  98 dtGgTllaalelLkekgpeevriavlvdkpatee 131
                   + G++ ++a++ + ++g  + +i+v +d++++  
    CCE28759.1 139 TAGTAKKEAIDKIQKQGGIVAGIVVALDRMEKLP 172
                   ****************************998865 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.2e-05       0.2     120     156 ..     127     163 ..     104     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.2e-05
     UPRTase 120 aertvlllDpviaTGgsaaaaiqlLkergvgeekIlv 156
                 a ++vl++D vi  G +  +ai++++++g  +  I+v
  CCE28759.1 127 AGKKVLIVDDVITAGTAKKEAIDKIQKQGGIVAGIVV 163
                 6789***********************9988888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1869.10
//
Query:       CCE28760.1  [L=655]
Description: probable GTP-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-48  163.2   0.0    4.7e-48  163.2   0.0    2.5  3  NOG1_N        NOG1 N-terminal helical domain
    5.3e-28   96.8   2.1    1.4e-27   95.5   2.1    1.8  1  NOGCT         NOGCT (NUC087) domain
    6.1e-25   86.8   0.4    1.5e-24   85.5   0.4    1.7  1  NOG1          Nucleolar GTP-binding protein 1 (NOG1)
    4.5e-16   58.9   0.0    1.1e-15   57.7   0.0    1.7  1  MMR_HSR1      50S ribosome-binding GTPase
      2e-09   37.2   0.1    4.4e-09   36.0   0.1    1.6  1  FeoB_N        Ferrous iron transport protein B
    0.00093   19.6   0.1       0.15   12.4   0.0    3.4  2  AAA_16        AAA ATPase domain
     0.0032   17.1   0.7     0.0059   16.2   0.0    1.8  2  Ras           Ras family
      0.008   16.1   4.3       0.74    9.7   0.2    3.8  4  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.014   15.2   0.1       0.05   13.5   0.1    1.9  1  NTP_transf_6  Nucleotidyltransferase
      0.035   14.2   1.6        8.9    6.3   0.0    3.0  3  Dynamin_N     Dynamin family
       0.13   12.5   0.3        1.1    9.5   0.0    2.5  2  Roc           Ras of Complex, Roc, domain of DAPkinase
        2.3    8.7  15.7    3.7e+03   -1.8  15.7    3.3  1  AAA_23        AAA domain


Domain annotation for each model (and alignments):
>> NOG1_N  NOG1 N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.2   0.0   3.2e-51   4.7e-48       2     160 .]       6     164 ..       5     164 .. 0.99
   2 ?   -3.1   1.2       4.6   6.9e+03      24      56 ..     496     527 ..     487     538 .. 0.41
   3 ?   -1.6   0.3       1.6   2.4e+03      19      45 ..     608     632 ..     603     643 .. 0.54

  Alignments for each domain:
  == domain 1  score: 163.2 bits;  conditional E-value: 3.2e-51
      NOG1_N   2 ekiptvptseelidkalrrakraakttkkkkneikrlrnlearkvrtasntlsdkLeeivkkfPnldelhpFyrelldvlvdkdelkksLaqvkwarkl 100
                 + ip vpt +e++d  l+r++r+ +t  +++ +i+r+r +++rkv++ ++t+s+k+ +i+++fP+l+++hpF+++ll++l+d d+++++L+q+++a++l
  CCE28760.1   6 KDIPPVPTQQEFLDIVLSRTQRKLPTQIRAGFQISRIRGFYTRKVKFSQETFSEKFGAILESFPRLQDIHPFHKDLLNTLYDADHFRIALGQLSTAKHL 104
                 78************************************************************************************************* PP

      NOG1_N 101 irkigkeyvnklkkaddkkeakelrreafgrvasvlkkvdkaldfLedvrkkLrkLpaiD 160
                 i++i+++yv+++k+++++ ++k+l+r+a+gr+a+++k+ ++ l +L +vr++L +Lp+iD
  CCE28760.1 105 IETISRDYVRLIKYGQSLFQCKQLKRAALGRMATLIKRLKDPLLYLDQVRQHLGRLPSID 164
                 ***********************************************************9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.6
      NOG1_N  24 aakttkkkkneikrlrnlearkvrtasntlsdk 56 
                 + ++ +  +ne +r++++ +++    ++++++k
  CCE28760.1 496 IREKQQLIRNE-ARMKKRLKNQAIIPRKAMKKK 527
                 33322222222.233333333333333333333 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.6
      NOG1_N  19 rrakraakttkkkkneikrlrnleark 45 
                 ++a+r+ak  +k+ n+++  r+ ea +
  CCE28760.1 608 SKAERIAKLNQKRMNRMA--RQGEADR 632
                 466666666666555543..3344443 PP

>> NOGCT  NOGCT (NUC087) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   2.1   9.1e-31   1.4e-27       1      54 []     402     455 ..     402     455 .. 0.99

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 9.1e-31
       NOGCT   1 rklerdleeenggagvYsvdlkkkYllkndewkyDiiPEildGkNvaDFidpdI 54 
                 rkl+rd e enggagv++vd++++Y+l+n++wkyD+iPEi+dGkNv+DF+dpdI
  CCE28760.1 402 RKLARDFEVENGGAGVFNVDMRESYILENPDWKYDKIPEIFDGKNVYDFVDPDI 455
                 89***************************************************9 PP

>> NOG1  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.4   9.9e-28   1.5e-24       1      58 []     234     291 ..     234     291 .. 0.99

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 9.9e-28
        NOG1   1 eIEkqAiaALkhladavlFllDpseecgysleeQlsLleeikelfankpvivvlnKiD 58 
                 +IE+q+i+A++hl++a+l+++D+se cgy+++ Q++L+++ik+lf+nk v+ v+nKiD
  CCE28760.1 234 TIEMQSITAIAHLRSAILYFMDLSEMCGYTVQAQIQLFKSIKPLFSNKLVFLVVNKID 291
                 6********************************************************9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   7.5e-19   1.1e-15       3     114 .]     171     289 ..     169     289 .. 0.70

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 7.5e-19
                 EEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS....HHHHHHHHHHHHHHHHCTSEEEEEEETT....TTCSHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGlie....gaseekglgkaflaleeadlillvvdas....eeklkpl 93 
                 +i G+pNvGKS++++++t++ + v+ +++tT+    g++++k  +++ +DtpG+++    + ++ ++ + +  a+ + ++il+ +d+s      +++++
  CCE28760.1 171 LICGYPNVGKSSFLRSITRADVDVQPYAFTTKSLFVGHFDYKYLRFQAIDTPGILDhpleEMNTIEMQSITAIAHLR-SAILYFMDLSemcgY-TVQAQ 267
                 799*************************************999**********874232122222233333333555.89******9943321.22222 PP

                 HHHHHHHHHH...TTSEEEEEEES CS
    MMR_HSR1  94 deeleellee...akkplilvlnk 114
                   +l + + +   ++k ++lv+nk
  CCE28760.1 268 -IQLFKSI-KplfSNKLVFLVVNK 289
                 .3333332.146677778889887 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.1     3e-12   4.4e-09       3     155 ..     170     334 ..     168     335 .. 0.76

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 3e-12
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----..SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGG.....HHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGi..Yslsayseeekvardflleeepdvvvnvvdatn.....lern 94 
                 + ++G pnvGk++++ ++t a+ +v  ++ +t     g++++k  +++ +D PGi  + l+++++ e  + + +++    +++  +d ++     ++ +
  CCE28760.1 170 LLICGYPNVGKSSFLRSITRADVDVQPYAFTTKSLFVGHFDYKYLRFQAIDTPGIldHPLEEMNTIEMQSITAIAHL-RSAILYFMDLSEmcgytVQAQ 267
                 6789***************************************************4445777766666666666544.456777777554111115666 PP

                 HHHHHHHHHT..TSSEEEEEETHHHHHHTT....EEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHH CS
      FeoB_N  95 LyLtlqllel..gvpvvlalnmideaekkg....ieidlkkLsekLgvpvvktsakkkegieellka 155
                 ++L+  +  l  ++ v l++n+id+a+ +     ++ +l++L ++ +++++++s +++eg++e+++a
  CCE28760.1 268 IQLFKSIKPLfsNKLVFLVVNKIDVAKPEDlseeLQAELQNLMKSDNIEMLQLSCNTQEGVQEVKNA 334
                 6666666554225667899*******976511116677788888889****************9986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0    0.0001      0.15       9      47 ..     150     190 ..     148     384 .. 0.86
   2 ?    3.0   0.0      0.08   1.2e+02      28      39 ..     642     653 ..     617     653 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
      AAA_16   9 leqLlsalervrsgrp..elvllsGesGvGKsslvrellra 47 
                 l+q+++ l+r+ s +p  + +l+ G++ vGKss +r++ ra
  CCE28760.1 150 LDQVRQHLGRLPSIDPntRTLLICGYPNVGKSSFLRSITRA 190
                 678999999888888888******************99963 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.08
      AAA_16  28 llsGesGvGKss 39 
                 l+ G +G+GK+s
  CCE28760.1 642 LVAGKRGIGKTS 653
                 89*********7 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     4e-06    0.0059       2     158 ..     170     337 ..     169     341 .. 0.71
   2 ?   -2.9   0.2       3.1   4.6e+03       1      14 [.     640     653 ..     640     653 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4e-06
                 EEEEESTTSSHHHHHHHHHHSSCSSS.CTTTSSEEEEEEEEEETTEEEEEEEEEETTS.....GGGHHHHHHHHTTE....SEEEEEEETTBHHHHHTH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkee.yesTigvdfytkeievdgkevkleiwDTAGq.....eefkslrelyyrda....egillvyditsresfenv 90 
                 l++ G  +vGK+s+l + ++ + + + y  T     +    ++d k ++++  DT G      ee ++++ ++++      ++il + d+++   ++  
  CCE28760.1 170 LLICGYPNVGKSSFLRSITRADVDVQpYAFTT-KSLF--VGHFDYKYLRFQAIDTPGIldhplEEMNTIEMQSITAIahlrSAILYFMDLSEMCGYTVQ 265
                 6789999********99999887655144455.2222..33456789999******9544444888888887776542221345555588887777633 PP

                 H..HHHHHHHHHSTTTSEEEEEEETTTGGGG-SS-HH...HHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHH CS
         Ras  91 k..kwveeikrvaeenvpivLvGnKvDleekravste...egeelakelglkfletSAktnenveeafeellr 158
                 +  ++++ ik   + n  + Lv nK+D+++ + +s+e   e ++l k+ +++ l+ S +t+e+v+e+ +++ +
  CCE28760.1 266 AqiQLFKSIKPLFS-NKLVFLVVNKIDVAKPEDLSEElqaELQNLMKSDNIEMLQLSCNTQEGVQEVKNAACE 337
                 32567777777777.688999*********77777652225577889999***************99776665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.1
                 EEEEEESTTSSHHH CS
         Ras   1 KlvlvGdsavGKts 14 
                 K ++ G++++GKts
  CCE28760.1 640 KHLVAGKRGIGKTS 653
                 66899*******97 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.02        30      99     122 ..     167     190 ..     146     227 .. 0.84
   2 !    9.7   0.2   0.00049      0.74      49      97 ..     283     335 ..     274     341 .. 0.79
   3 ?   -1.9   0.3       1.9   2.8e+03      52      98 ..     489     536 ..     488     543 .. 0.63
   4 ?   -0.0   0.0      0.47   7.1e+02      81     114 ..     622     653 ..     597     653 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.02
                  TSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpe 122
                   +t +++G   vGKS+++ +++  
   CCE28760.1 167 TRTLLICGYPNVGKSSFLRSITRA 190
                  478999************999875 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00049
                  EEEEEE-GGG--HHH....HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  49 pvivlnKiDlleeee....eleelkeelealgyevllvsaktkegleelkell 97 
                  + +v+nKiD+++ e+       el++ +++ ++e+l +s +t+eg++e+k++ 
   CCE28760.1 283 VFLVVNKIDVAKPEDlseeLQAELQNLMKSDNIEMLQLSCNTQEGVQEVKNAA 335
                  6799********999666333445555666689***************99875 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.9
                  EEE-GGG--HHHHHHHH.HHHHHHTTSEEEE--TTTHTTHHHHHHHCT CS
  RsgA_GTPase  52 vlnKiDlleeeeeleel.keelealgyevllvsaktkegleelkellk 98 
                  v+ K++l+ e+++l +  +   ++l  + ++ ++  k++++el+++l+
   CCE28760.1 489 VMRKAELIREKQQLIRNeARMKKRLKNQAIIPRKAMKKKYSELEDALD 536
                  577999999988443330333445556666666666777777777665 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.47
                  E--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHH CS
  RsgA_GTPase  81 lvsaktkegleelkellkdktsvlvGqSGvGKSt 114
                     a+++e+ ++ +  l  +  +++G+ G+GK++
   CCE28760.1 622 NRMARQGEADRHTTVSL--QKHLVAGKRGIGKTS 653
                  44444444444433334..445678999999986 PP

>> NTP_transf_6  Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   3.3e-05      0.05      42     104 ..     474     546 ..     472     557 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.3e-05
  NTP_transf_6  42 YFdpsdlseeaekaleaklkelfpelpwevkNqarmhlwned..........epytstedAiskwpetatavG 104
                   Y+d+++  e++++a   + +el++e +  ++N+arm+ + ++          ++y+++edA+++    +t ++
    CCE28760.1 474 YYDSEEDMEDDDEAEVMRKAELIREKQQLIRNEARMKKRLKNqaiiprkamkKKYSELEDALDQLGVDTTNLA 546
                   9999888766666666777778888888899999999888666899999999**********98777776665 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.006       8.9       2      32 ..     171     201 ..     170     208 .. 0.79
   2 ?    5.7   0.0    0.0096        14     106     167 ..     219     289 ..     206     290 .. 0.72
   3 ?   -2.0   0.5       2.2   3.2e+03      61      80 ..     492     511 ..     457     560 .. 0.47

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.006
                 EEEEBTTTTHHHHHHHHHTS--S---SSS-- CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpnptT 32 
                 +++G  + GKSS+l +++++d+ +     tT
  CCE28760.1 171 LICGYPNVGKSSFLRSITRADVDVQPYAFTT 201
                 6899999***********9998665555555 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0096
                 EE---B-SSSGTTS.....HHHHHHHSTTEEEEEEEETTS-C..CC-CHHHHHHHHSTTBTT..EEEEEE- CS
   Dynamin_N 106 vDlPGldsvnkrdq.....elvkeyikkadiilavtsanhdl..snsealflarevdpkgkr..tivvltk 167
                 +D+PG+ + + +++     + ++ +++ +++il+ ++ +  +  + + + +l ++++p  ++  ++ v++k
  CCE28760.1 219 IDTPGILDHPLEEMntiemQSITAIAHLRSAILYFMDLSEMCgyTVQAQIQLFKSIKPLFSNklVFLVVNK 289
                 9*******999999778766666666**********99885411444555566677776666555555555 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.2
                 EB--CHHHHHHHHHHHHHHH CS
   Dynamin_N  61 kledfsevreeieketekia 80 
                 k e + e ++ i++e + ++
  CCE28760.1 492 KAELIREKQQLIRNEARMKK 511
                 22222222222222222222 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00071       1.1       2     119 ..     170     291 ..     169     292 .. 0.59
   2 ?   -2.4   0.2       3.6   5.4e+03       2      14 ..     641     653 ..     640     653 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00071
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-S.....GGCTTTT-HHHH....CTSCEEEEEEE..G CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaG.....qerfrslhplyl....reaalailvyd..s 89 
                 ++++G  +vGK+s+l+++++ +++ +  +     f+tk++  + ++    + k ++++  Dt G      e++++++   +    + ++++++++d  +
  CCE28760.1 170 LLICGYPNVGKSSFLRSITRADVDVQPYA-----FTTKSL-FVGHF----DYKYLRFQAIDTPGildhpLEEMNTIEMQSItaiaHLRSAILYFMDlsE 258
                 6899***************9999876544.....334433.12222....3456788888888854433355555432222011123444455555422 PP

                 H...HHHCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  90 r...ssenlkeWlkelkkvagkspvilvgnkiD 119
                     + +   + +k++k   +++ v+lv+nkiD
  CCE28760.1 259 McgyTVQAQIQLFKSIKPLFSNKLVFLVVNKID 291
                 222234555577888888888888889999988 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.6
                 EEEESSTTSSHHH CS
         Roc   2 vvlvGdsgvGKts 14 
                  ++ G+ g+GKts
  CCE28760.1 641 HLVAGKRGIGKTS 653
                 5788********8 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8  15.7       2.5   3.7e+03       4     193 ..     150     536 ..     148     540 .. 0.54

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.5
      AAA_23   4 ienfrsf..rdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrks....grgfeksdveiesegkvkayveltfenkdgry.......... 86 
                 +  +r++  r  +id +    lI+G    GK+++l+ i+ a     p   +++    g +f     +++   +++++++  +e  ++++          
  CCE28760.1 150 LDQVRQHlgRLPSIDPNTRTLLICGYPNVGKSSFLRSITRADVDVQPYAFTTKslfvG-HFDYKYLRFQAI-DTPGILDHPLEEMNTIEmqsitaiahl 246
                 5566777644456888888888888888888888888888888777777666545431.222222223222.223333333333333333333333355 PP

      AAA_23  87 ................trsiererelskk..kgkttkkaklellei..........deleqfisellgskkiilnlilflgqerfeefel......... 148
                                 t++ + + ++s k   +++  +   +   +          +el+ ++++l++s++i++ ++++  qe  +e ++         
  CCE28760.1 247 rsailyfmdlsemcgyTVQAQIQLFKSIKplFSNKLVFLVVN---KidvakpedlsEELQAELQNLMKSDNIEMLQLSCNTQEGVQEVKNaacerliae 342
                 566666666666664433333333333331122222222222...133355666777777777778888888777777777777444444333333322 PP

      AAA_23 149 ..kdkke............................................................................................ 153
                   +   +                                                                                            
  CCE28760.1 343 rvN---Qklkagtnnsgavggrladvmsrihvatpmsgqtletfipegiksmkkydkedperrklardfevenggagvfnvdmresyilenpdwkydki 438
                 221...133355566666666666666666677777777777777776666666666777777777777777777777777777777777777777777 PP

      AAA_23 154 ........................................................rleelekeleeledekkllekl..eqekekekeleeleeele 193
                                                                          ++e ++ ++ +  +kk l+++  + +k  +k+++ele++l 
  CCE28760.1 439 peifdgknvydfvdpdieaklaaleeeeekleqegyydseedmedddeaevmrkaeLIREKQQLIRNEARMKKRLKNQaiIPRKAMKKKYSELEDALD 536
                 77777777777766666665555555555555555555555555555555554433555555555555555555555566444445555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1479  (0.0824921); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 4604.78
//
Query:       CCE28761.1  [L=464]
Description: probable RAB GDP-dissociation inhibitor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.8e-192  639.0   0.0   3.2e-192  638.8   0.0    1.0  1  GDI            GDP dissociation inhibitor
  ------ inclusion threshold ------
      0.046   14.0   0.1        0.1   12.9   0.1    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.089   13.4   0.1        2.3    8.8   0.1    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> GDI  GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  638.8   0.0  5.3e-196  3.2e-192       3     432 ..       6     453 ..       1     457 [. 0.94

  Alignments for each domain:
  == domain 1  score: 638.8 bits;  conditional E-value: 5.3e-196
                 XEECEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHH-TT...HHHHHHH--GGG--EESS--BEETTSHHHHHHHHTTGGGC CS
         GDI   3 eeydvivlGtGlkecilsGllsvdgkkvlhldrndyyGgesasltleqlyerfkle...ekpeeklGkdrdwnvdlipkfllanGelvkiliktdvtry 98 
                 +eydvivlGtGl+ecilsG+lsv+gkkvlh+drnd+yGge+as++le l++++ +    e+p  k+G+  dwn+dl+pkfl+++Gel++il+ tdvtry
  CCE28761.1   6 KEYDVIVLGTGLTECILSGVLSVKGKKVLHIDRNDHYGGEAASVNLEALFKKYGNYqagEEPWTKYGRMNDWNIDLVPKFLMSSGELTNILVSTDVTRY 104
                 69************************************************9986554559999************************************ PP

                 S-EEE-SEEEEEE....TCEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHH-BTTBGGGSTT--TTTSBHHHHHHHCT--HHHHHHHHHHTS--SS CS
         GDI  99 lefkaveGsyvyk....egkiakvpanelealaspllglfekrrakkfleyvseyeeddpktyedldlkkatmkevykkfdlsedtkdfiGhalalyrd 193
                 lefk+v+Gsyv +    +  +akvp++  eal+spl+g+fekrr+k f+e+v  ++ +dp+++++ld+++ tmk+v++kf+l+ +tkdfiGha+aly++
  CCE28761.1 105 LEFKQVAGSYVQQgptsKATVAKVPSDAAEALKSPLMGIFEKRRMKSFIEWVGTFDLKDPESHKGLDMNTCTMKDVFDKFGLETTTKDFIGHAMALYLT 203
                 ************98888899******************************************************************************* PP

                 SGGGGSB..CHHHHHHHHHHHHHHCCCSS-SEEEETT-TTHHHHHHHHHHHHTT-EEETS--ECEEEE-TTS-EEEEEE....TTE.E...EEECEEEE CS
         GDI 194 ddylkqp..aletleriklyaeslarygkspylyplyGlGelpqgfarlsaiyGGtymlnkpvdevvldedgkvvGvks....eee.v...akakkvic 282
                 ddy++ p  a e++eri+ly +s+arygkspy+yplyGlGelpqgfarlsaiyGGtymln+ vde+ + + +k+ G+k+    + e +   +kak +++
  CCE28761.1 204 DDYITTPgqAPEAIERIRLYGNSVARYGKSPYIYPLYGLGELPQGFARLSAIYGGTYMLNTTVDELQY-DGDKASGIKAtmknGAEeMkfeTKAKMILG 301
                 ******9445689*******************************************************.67788888863322222123335899**** PP

                 -GGG-CCCEEEEEEEEEEEEEESS--TTSTT-SSEEEEE-GGGCTSSS-EEEEEEEGGGTSS-TT-EEEEEEEE--SS.-HHHHTHHHHHTT-SECEEE CS
         GDI 283 dpsylpekvrkvgkviraicilshpipntddadsvqiiipqkqlgrksdiyvalvssahnvaakgkylaivsttvete.npevelepalellgpieekf 380
                 dpsy+p+k+r +g+v+raicil+hp++ t+d+ds q+iipq+q+grk+diy+a+vssahnv++kg+++aivst+ et+ n + elep+le lg iee+f
  CCE28761.1 302 DPSYFPNKTRVTGHVLRAICILKHPLAGTNDSDSAQLIIPQSQVGRKNDIYIACVSSAHNVCPKGYWIAIVSTIAETSaNHHLELEPGLERLGKIEEQF 400
                 ****************************************************************************9637889**************** PP

                 EEE.EEEEEESSSSTTTSEEE-----S-SBSHHHHHHHHHHHHHHHSS----- CS
         GDI 381 vki.sdlyepvedgskdnifisksydatshfettvedvkdiykrltGkkldlk 432
                 +     + ep+edg kdnifisksydatshfett++dv+diy+r++G++l+++
  CCE28761.1 401 MGPpIPIHEPLEDGKKDNIFISKSYDATSHFETTTDDVQDIYHRCMGEELKVE 453
                 *852689******************************************9987 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.7e-05       0.1       1      40 [.      12      51 ..      12      66 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.7e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev 40
                   ++G+Gl+ + +   L+ +g++vl ++++d+ GG aas+++
     CCE28761.1 12 VLGTGLTECILSGVLSVKGKKVLHIDRNDHYGGEAASVNL 51
                   78999999999999999********************986 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00039       2.3       2      52 ..      10      57 ..       9      60 .. 0.87
   2 ?    1.9   0.0     0.058   3.4e+02      56      78 ..     259     281 ..     251     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00039
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHH CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklek 52
                v+v+G G++ + l g+l+  gkkV  ++r+d+     +e+as +l+  ++k
  CCE28761.1 10 VIVLGTGLTECILSGVLSVKGKKVLHIDRNDHYG---GEAASVNLEALFKK 57
                89*****************************999...77777777666665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.058
                 EEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  56 evllntkveeiegsedgvesvkl 78 
                 + +lnt+v e++ ++d+ +++k 
  CCE28761.1 259 TYMLNTTVDELQYDGDKASGIKA 281
                 6799************9998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3409.94
//
Query:       CCE28762.1  [L=225]
Description: related to ribosomal protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-22   77.2   0.1    1.4e-21   76.4   0.1    1.4  1  MRP-L47   Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
     0.0086   15.6   1.9      0.013   15.0   1.9    1.2  1  Clc-like  Clc-like


Domain annotation for each model (and alignments):
>> MRP-L47  Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.1   1.6e-25   1.4e-21       1      87 []     100     191 ..     100     191 .. 0.91

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.6e-25
     MRP-L47   1 Leeffdd..kkdlkseeevkvgraWaaeeLrkksfedLhklwyvllkekNmLlteeeellrkqek...mpsperlkkvkesMeniktVlkeR 87 
                 L+ ff +  k  + ++e  + graW++eeLr+ks+edLh+lw+v+ k +N+L t + el r q      ++++r ++v+ +M +ik+ l+eR
  CCE28762.1 100 LWGFFPEpgKLLWTPDETSQHGRAWTVEELRRKSWEDLHSLWWVCCKQRNLLATAKTELARAQFGfghSEFEKRDSEVQSTMRAIKHALTER 191
                 78899886666675556669********************************************97777888999****************9 PP

>> Clc-like  Clc-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.9   1.4e-06     0.013      26     107 ..     123     199 ..     117     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.4e-06
    Clc-like  26 sWqvvdireiraivqsGLWldCtraekhvvksqdvdegplhCvYkFdidallvyseklevidedsavgelethkFygWhkav 107
                 +W v ++r    +  + LW+ C ++++  + +++++e  ++  + F ++++   + ++       a ++  t ++y+W+ av
  CCE28762.1 123 AWTVEELRRKSWEDLHSLWWVCCKQRN--LLATAKTE-LARAQFGFGHSEFEKRDSEV--QSTMRAIKHALTERYYTWQDAV 199
                 899999999999999********7777..55566777.78999*******88877554..4556788899999******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1706.36
//
Query:       CCE28763.1  [L=41]
Description: uncharacterized protein CPUR_02451 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       138  (0.00769703); expected 358.6 (0.02)
Passed bias filter:                       67  (0.00373696); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 322.88
//
Query:       CCE28764.1  [L=953]
Description: uncharacterized protein CPUR_02452 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-10   41.0   0.2    2.1e-10   40.1   0.2    1.3  1  Fungal_trans  Fungal specific transcription factor domain
    1.7e-06   28.2   7.3    1.8e-05   25.0   1.1    2.7  2  zf-H2C2_2     Zinc-finger double domain
    0.00071   19.8   4.4     0.0015   18.8   4.4    1.5  1  zf-Di19       Drought induced 19 protein (Di19), zinc-binding
     0.0011   19.6  15.1      0.061   14.2   5.9    2.9  2  zf-C2H2_4     C2H2-type zinc finger
  ------ inclusion threshold ------
       0.15   12.4   3.1        8.5    6.8   0.8    2.7  2  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding
       0.35   11.4  14.6       0.36   11.4   7.3    2.7  2  zf-C2H2       Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.2   6.9e-14   2.1e-10       4     195 ..     519     722 ..     515     733 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 6.9e-14
  Fungal_trans   4 ffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltses..........qefiafplraeili.hedfsspss 89 
                   +f +fh+++pilh  ++              a+p+l++a++++Ga +s+    ++ ++  + +                  + e+l+  + ++   s
    CCE28764.1 519 YF-HFHQHIPILHPSTLRIIE----------AHPGLAAAMCCIGACYSKRVVLSDVQDMME-AlwtavardcrV------MSEESLQdADIAEATES 597
                   55.58****************..........******************999998444333.258887766542......24444442222345566 PP

  Fungal_trans  90 slwilqsLlllelyektss...dralherhhgvavrlarslgLhrnpsyvgkks.................lwklweeeaesrrRlwwaaFylDkti 166
                   s++ lq+ ll ++ ++  +    r  + r++ ++   ar+lgL + +++ +  s                  w  w+  +e r Rl  a F  D+++
    CCE28764.1 598 SIEELQTVLLTSILHFVNGtsmQRQRALRISPMMAAQARRLGLLGLSNDPSVYSvlhhsksdgadvtvdqfDWITWVG-QELRARLMHALFAYDTMV 693
                   6888887777777777777222555555599999999999888877777776667889********************.****************** PP

  Fungal_trans 167 alklGrpp.llddsqinlpLPcddddlwes 195
                    l         d+s+++lpLPc d+  w +
    CCE28764.1 694 ELLSSEAAaQYDASELHLPLPCHDE-AWHA 722
                   ********999**************.7765 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.6    0.0054        16      14      26 .]     220     232 ..     213     232 .. 0.86
   2 !   25.0   1.1   5.9e-09   1.8e-05       1      25 [.     235     259 ..     235     260 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0054
   zf-H2C2_2  14 pyeCplCdkaFkt 26 
                 ++ Cp C k++ +
  CCE28764.1 220 KFPCPHCTKTYLH 232
                 599*******976 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 5.9e-09
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 +L+rH+  Htg++py C lC+++F+
  CCE28764.1 235 HLKRHLLRHTGDRPYMCVLCRDTFS 259
                 79**********************8 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   4.4   5.1e-07    0.0015       2      45 ..     220     263 ..     219     273 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.1e-07
     zf-Di19   2 sftCPyCgk.eltvkeLveHvedeHrveskevvCPvCaekvtk.dl 45 
                 +f+CP+C+k  l++k L +H+   H+ + ++++C +C ++ ++ d+
  CCE28764.1 220 KFPCPHCTKtYLHAKHLKRHLLR-HTGD-RPYMCVLCRDTFSRsDI 263
                 69*******78**********98.8876.6799****998665354 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   5.9     2e-05     0.061       1      23 [.     221     243 ..     221     244 .. 0.97
   2 !    9.9   1.8   0.00047       1.4       1      22 [.     249     270 ..     249     272 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f+Cp+C+k++   k+L+rHl++h
  CCE28764.1 221 FPCPHCTKTYLHAKHLKRHLLRH 243
                 89********************9 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00047
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkt 22 
                 + C +C+ +Fs+++ L+rH+++
  CCE28764.1 249 YMCVLCRDTFSRSDILKRHFQK 270
                 78********88888****986 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.8    0.0029       8.5       1      21 [.     220     240 ..     220     241 .. 0.94
   2 ?    5.0   0.1     0.011        32       2      21 ..     249     268 ..     248     269 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0029
                  ECBBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   1 qfYCvlCdKyFksenaldnHl 21 
                  +f C++C K++  ++ l+ Hl
   CCE28764.1 220 KFPCPHCTKTYLHAKHLKRHL 240
                  688*****************7 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.011
                  CBBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHl 21 
                  + CvlC  +F+ +  l+ H+
   CCE28764.1 249 YMCVLCRDTFSRSDILKRHF 268
                  89************999997 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   7.3   0.00012      0.36       1      23 []     221     243 ..     221     243 .. 0.98
   2 ?    4.0   0.7     0.026        78       1      20 [.     249     268 ..     249     270 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++Cp+C+k++ +  +LkrH+ +H
  CCE28764.1 221 FPCPHCTKTYLHAKHLKRHLLRH 243
                 89********************9 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.026
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                 y C  C  +F+r++ LkrH 
  CCE28764.1 249 YMCVLCRDTFSRSDILKRHF 268
                 89*****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (953 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.38
# Mc/sec: 7480.05
//
Query:       CCE28765.1  [L=925]
Description: uncharacterized protein CPUR_02454 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-29  101.3   0.0    5.3e-29  100.6   0.0    1.4  1  Ysc84     Las17-binding protein actin regulator


Domain annotation for each model (and alignments):
>> Ysc84  Las17-binding protein actin regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   2.9e-33   5.3e-29       2     126 ..     194     319 ..     193     321 .. 0.88

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 2.9e-33
       Ysc84   2 gvgaGfqiGvdiydcvlvlntkealeaftkktrvslGgdlsvaaGpvgaggeaeaaaaak...lkapvysysksrGlyaGvsldgtviterkdaNaafY 97 
                 + ++ f iGvdiydcvlv+ + +alea+t ++rv+lG+d+s+  Gp+ ++ + +  +a +   l++++++y+k+rG y  v+l+g+++ter ++N++fY
  CCE28765.1 194 TPTLSFIIGVDIYDCVLVVTNLAALEAIT-QPRVTLGEDVSLNNGPLTTTLDSDD-VAIDwktLDNTILAYMKARGRYQSVNLQGCILTERANENERFY 290
                 66899************************.78**************996655542.222233589********************************** PP

       Ysc84  98 gekgvsveqILrgevpwp.aaakeLlevlk 126
                 g +  +  +IL+g+v+   ++++ L+ev+k
  CCE28765.1 291 GAE-ATQIDILAGNVARHvEETRHLFEVIK 319
                 *77.***********95559*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (925 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 6694.06
//
Query:       CCE28766.1  [L=333]
Description: uncharacterized protein CPUR_02455 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2518.61
//
Query:       CCE28767.1  [L=350]
Description: uncharacterized protein CPUR_02456 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2505.18
//
Query:       CCE28768.1  [L=343]
Description: uncharacterized protein CPUR_02457 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2590.60
//
Query:       CCE28769.1  [L=683]
Description: related to actin-related protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-16   60.2   0.0    7.3e-14   51.2   0.0    2.6  3  Actin     Actin
  ------ inclusion threshold ------
      0.033   14.6   1.1       0.11   12.9   1.1    2.0  1  FtsA      Cell division protein FtsA


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   8.1e-18   7.3e-14      62     199 ..      81     223 ..       9     239 .. 0.74
   2 !    6.2   0.0   0.00036       3.2     299     351 ..     454     507 ..     317     533 .. 0.79
   3 ?   -2.9   0.0      0.22     2e+03     386     404 ..     660     678 ..     650     680 .. 0.83

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 8.1e-18
       Actin  62 rspvedGvvedwdaveelwehvlkeelkvdpeehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVl 160
                   p++ G ++  da+ + +ehv  + l+++ +++p++l  +p  ++ + e +++ vfEk ++pal++  s   + +     +  v+D+G+++  v++++
  CCE28769.1  81 VWPIRGGRIVRMDAFLAFLEHVH-SLLTTTYHNTPIMLMASPQWTRPDCEAIAQYVFEKTRTPALCMIHSGLATQYGLKWPNMTVIDIGYEKVDVTAIH 178
                 3599*****************85.679999999999999999999999*************************************************** PP

       Actin 161 dGyvLkk......airrsdlgGkaLteqlkellssknvevtpryl 199
                 dG v+++      +  ++  gG+  t+ l++ll  kn++      
  CCE28769.1 179 DGRVVNQidlgssGSEKQISGGEIFTRRLQKLLGAKNFTYDMAEK 223
                 ****986444333566677799999******99999877654444 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00036
       Actin 299 kskllgiselivaainacd.vdlrpeLlanivvtGGnsllpglteRlekelaql 351
                  +++  i   i+++i+ +d + +rp    n v +G+ s l+gl+e + + l+++
  CCE28769.1 454 RHEIDRIVTAIYHTIQGIDdMYMRPPCWDNLVFVGNGSRLRGLKENILQTLQAR 507
                 56667788999******986889**********************999999886 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.22
       Actin 386 qlwvskqEYeEqGssvver 404
                  + +s+ +Y+E G++ +++
  CCE28769.1 660 LMSLSRVDYNELGPKGIRK 678
                 5899*********998876 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.1   1.3e-05      0.11       2      54 ..     164     227 ..     163     524 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
                 EEEE-SSSEEEEEEETTEEEE...EEEES-.....-HHHHHHHHHHHH...T--HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx...xxxxxx.....xxxxxxxxxxxxx...xxxxxxxxxxxxx RF
        FtsA   2 lvDiGagktdvavaedgalvh...lrvigv.....ggngitkdiakal...rtaveeAerikik 54 
                 ++DiG +k+dv+ ++dg++v+   l + g      gg+ +t+ ++k l   +   + Ae++k++
  CCE28769.1 164 VIDIGYEKVDVTAIHDGRVVNqidLGSSGSekqisGGEIFTRRLQKLLgakNFTYDMAEKLKKS 227
                 8****************98886553333335566688888888888774445668999999943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4915.36
//
Query:       CCE28770.1  [L=383]
Description: uncharacterized protein CPUR_02459 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-12   46.7   0.0      6e-12   45.8   0.0    1.4  1  MULE        MULE transposase domain
     0.0059   17.3   0.4      0.017   15.8   0.0    1.9  2  FAR1        FAR1 DNA-binding domain
  ------ inclusion threshold ------
       0.18   11.6   1.9       0.34   10.7   1.9    1.4  1  zf-C2H2_10  C2H2 zinc-finger
        5.7    6.9   7.5       0.28   11.1   1.0    2.2  2  zf-CCHC_6   Zinc knuckle


Domain annotation for each model (and alignments):
>> MULE  MULE transposase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   1.3e-15     6e-12       2      86 ..     214     300 ..     213     304 .. 0.91

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 1.3e-15
        MULE   2 vvlDgTyktnkyklplltvvgvddngqlvplafalveseneesyewllq...elleevsgqrspkviitDkekallnaleevfpeakh 86 
                 ++lD T ++nk++ pl+ ++g+d  ++ + +afal+  e +e++ w+++   ++ e +++  +p+v+ tD + a  +a+  +fp a+ 
  CCE28770.1 214 LTLDCTGRKNKFNKPLFEIIGTDTWNRPFCVAFALLRGEATEDFAWAVNqvkSISEYHDI-PPPSVVRTDGCPACVSAVDVCFPTAVS 300
                 5799*********************************************78555555555.9**********************9876 PP

>> FAR1  FAR1 DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.8e-06     0.017       5      79 ..      27      96 ..      25     109 .. 0.80
   2 ?   -3.9   0.1         4   1.8e+04      34      44 ..     357     367 ..     357     379 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.8e-06
        FAR1  5 eYakrvGFsvrvkksrrsrkdgeiirrkfvCskeGfkkekkktkeakrerastrtgCkAmlvvkkek.egkwvvtk 79
                ++++  G++  v +s+r ++ +  i  +++C + Gf k +++     ++ +s r+gC  +++ k+   eg w++++
  CCE28770.1 27 AWSHDRGYTFTVGRSTREKSGR--ILITYACGRGGFPKVSRRI----QQTSSRRCGCPFSINAKQLPdEGGWALRH 96
                6788899999999999986666..7789********9998888....888999**********9987699999875 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4
        FAR1  34 vCskeGfkkek 44 
                 vC+++G k ++
  CCE28770.1 357 VCHQQGHKMTS 367
                 68888877655 PP

>> zf-C2H2_10  C2H2 zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.9   7.7e-05      0.34       5      15 ..     354     364 ..     353     364 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.7e-05
  zf-C2H2_10   5 tCSYChetGHt 15 
                 tCS Ch++GH+
  CCE28770.1 354 TCSVCHQQGHK 364
                 8*********5 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.8       1.9   8.5e+03      14      19 ..      70      75 ..      69      78 .. 0.80
   2 ?   11.1   1.0   6.2e-05      0.28       4      24 ..     355     375 ..     354     378 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.9
   zf-CCHC_6 14 arSkrC 19
                ++S+rC
  CCE28770.1 70 TSSRRC 75
                689999 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.2e-05
   zf-CCHC_6   4 CknCGAFGHtarSkrCPmkcw 24 
                 C  C   GH+++S  CP+++ 
  CCE28770.1 355 CSVCHQQGHKMTSMVCPQRRS 375
                 8888899***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2935.61
//
Query:       CCE28771.1  [L=1251]
Description: probable ethionine resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-151  504.8   0.0   2.5e-151  504.4   0.0    1.2  1  Tyr-DNA_phospho  Tyrosyl-DNA phosphodiesterase
    1.9e-55  186.9  28.1    5.2e-34  117.2  10.3    2.5  2  MatE             MatE
    3.9e-06   27.0  10.4    3.9e-06   27.0  10.4    2.9  3  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai


Domain annotation for each model (and alignments):
>> Tyr-DNA_phospho  Tyrosyl-DNA phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  504.4   0.0  4.2e-155  2.5e-151       2     424 .]      39     521 ..      38     521 .. 0.94

  Alignments for each domain:
  == domain 1  score: 504.4 bits;  conditional E-value: 4.2e-155
                      EE--TTTT----------EE-HHHHH--TTEEEEEEE-S-EEHHHHHTTS.-T-...-EEEEEE..............ETTSEE-......... CS
  Tyr-DNA_phospho   2 lkltkirdlpeesernkdtitlkdilgdplleeavqfnFlfdlefllsqldedvrrkvkvvivhgakkeedeererleekakryp......... 86 
                       +lt+irdlpee   nkd++tl+dilgd l++e+++fnFl+d++fl++ +d+d+r++v+v++vhg++k+ed++r +l    ++++         
       CCE28771.1  39 WQLTWIRDLPEEL--NKDAVTLHDILGDALISECWEFNFLHDIDFLMDAFDPDTRHLVDVHVVHGFWKREDPQRMALS-VSSSFSyfllylatf 129
                      689*******888..89**********************************************************996.344445579****** PP

                      ...........................TEEEEEE---.TT--B---EEEEEETTSEEEEEEESS-BSHHHHHSSB-EEEE---EEE........ CS
  Tyr-DNA_phospho  87 ...........................nvelieakmpepfgthHsKmmilfyeddslrvvihtaNlieaDwgnmtqgvwrspllpl.......l 146
                                                 nv+l+ a+mpe+fgthHsKmmilf++dd++++vihtaN+i++Dw+nmt++vwrsp+lp+        
       CCE28771.1 130 swptsmarmsdlvllhvymklaasaynNVKLHIAPMPEMFGTHHSKMMILFRHDDTAEIVIHTANMIAKDWTNMTNAVWRSPRLPKaaessqvA 223
                      **************************99**********************************************************99998854 PP

                      .....S--SS--HHHHHHHHHHHTT..-..HHHHTHHHHHTEE-GGGT-EEEEE---TTS--.......HHHHHHHHHHHTCT..T----EEEE CS
  Tyr-DNA_phospho 147 esskeseeesgtrFkrdLleYLkaygkk..klkklieklkkyDfsevrvaliaSvPgrhkgs...ktkwGlakLkkalkelplekeekskelei 235
                      +s ++ + +sg rFk dLl+YL++y+ +  ++k+l++kl++yDfs+vr+al+aS+Pg h+g+   +t +G+ ++k+ lk+ p+    ++ + e+
       CCE28771.1 224 SSYEDLAIGSGDRFKADLLSYLRCYDGRvlTCKPLADKLSRYDFSAVRAALVASAPGVHDGHdlsHTPFGWSAMKRYLKAAPC----QAGSAEV 313
                      47889999******************99************************************99*****************....444679* PP

                      EEE-SBB---S-.SSS---HHHHTHHHHHTTSS---HHHHHTEEEE..EE--BSGGGTTSTTGGGGGGG-B---...SGGHHHHHHHTS--EEE CS
  Tyr-DNA_phospho 236 vaqvSSigslgstekwlknefleslspalqgkdkskeeeekkskpkfkiifPtveevrrsldgyasggsihfkiqsaqqqkqleelkpylckwk 329
                      v+q+SSi++lg +++wl+++++++l +            ++ ++p+fki+fPt++evrrsldgyasggsih++iqsaqq +q+++l+p+l++w+
       CCE28771.1 314 VVQISSIATLGGKDSWLQETLFDALASGQ----------SRGQRPRFKIVFPTADEVRRSLDGYASGGSIHTRIQSAQQAQQMKYLQPILYHWA 397
                      **************************999..........56789************************************************** PP

                      E-TT.............TTTTT--B--EEEEEE--STTSEESEEEEES--BSHHHH--S.....SS--SSBEEEEEEEGG.............. CS
  Tyr-DNA_phospho 330 qdse...........eeagRkraapHiKtyirfssktlkkidWalltSaNLSkqAWGelekakeelrirsyElGVlvlpk.............. 398
                      +d +           +++gR+raapHiKtyir++++  +++dWalltSaNLSkqAWG ++k ++++ri+s+E+GVl++p+              
       CCE28771.1 398 NDCDdgaalpsgiavQNSGRNRAAPHIKTYIRYNEN--QTLDWALLTSANLSKQAWGGAAKPSGQVRIASWEVGVLIWPEllqpdapsmvgtfq 489
                      *999***********99****************444..6*****************************************88766666555444 PP

                      ................------SEEESS-SSEEE-- CS
  Tyr-DNA_phospho 399 kdlpee..........eektevgvrvPydlplepYs 424
                      +    +           ++  v+vr+Py+lpl++Y+
       CCE28771.1 490 S----DspgpldpaaePNAVPVAVRIPYSLPLQQYG 521
                      2....1556688999888999**************5 PP

>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2  10.3   8.6e-38   5.2e-34       1     161 []     820     980 ..     820     980 .. 0.99
   2 !   75.2   9.7   7.6e-25   4.5e-21       3     159 ..    1042    1199 ..    1040    1200 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 8.6e-38
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfv.fllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqil 98 
                 P++++++l+++++ ++++ vgr+g+++l+avs+a++   +  + ++ gl+t+l+tl++qa+G+++++ ++ +++++ ++ll+ls+++a+l +lf+e il
  CCE28771.1 820 PLIVTFFLQYSINVASVFAVGRIGKVELGAVSLANMSQAISCLaPFQGLATSLDTLCAQAYGSGHKHLVGLQCQRMACFLLCLSVPVAVL-WLFAESIL 917
                 99***************************************999**********************************************.******** PP

        MatE  99 slftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislislllniplnyl 161
                  ++  d+e + la+ ylr++i++ip+l+l++v +++ +++g +++++y++++++++ni +n+l
  CCE28771.1 918 IYVVPDAETARLAALYLRVMIFSIPGLVLFEVGKRFTQAQGLFRATTYVLIVAAPVNIFINWL 980
                 *************************************************************96 PP

  == domain 2  score: 75.2 bits;  conditional E-value: 7.6e-25
        MatE    3 alenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqils 99  
                  ++++ +e+l + i+tll gr+g++ lAa s+  +++s+ + +++ +s+a++t+v++  Ga+ +++ak +  ++++++ll++l+   +  +++ ++  
  CCE28771.1 1042 MIMVEAEWLAFEIMTLLSGRFGTEYLAAQSVLVTLSSISYQIPFPMSIAASTRVANLMGAGLVDAAKITGKVTFVAALLIGLLNLTVFSALRFHLPL 1138
                  6778899****************************************************************************************** PP

        MatE  100 lftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislisl.llnipln 159 
                  lft+d+ v+++++r l+++++ +++++l   + g lrg+gk+ ++  ++lis+ ++ +p++
  CCE28771.1 1139 LFTNDPGVIQAVARVLPVVAVMQVFDGLGAGAHGLLRGIGKQSIGGPANLISYyVISLPVS 1199
                  *********************************************************9985 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0  10.4   6.5e-10   3.9e-06       1      86 [.     933    1022 ..     933    1081 .. 0.79
   2 ?   -3.1   0.5       1.2   7.4e+03      91     115 ..    1110    1131 ..    1087    1141 .. 0.54
   3 !    8.3   0.5   0.00038       2.3       1      80 [.    1153    1235 ..    1153    1245 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 6.5e-10
  Polysacc_synt_C    1 vLailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllli..plfgivGaaiatvlallvvavlnlyalrrllgikl..e 86  
                       +L+++++si+ l+l+ v+    q+ g  ++++++l+++a v++ +n+ll+    +g +Ga ia ++++++  +l++ ++  + g +    
       CCE28771.1  933 YLRVMIFSIPGLVLFEVGKRFTQAQGLFRATTYVLIVAAPVNIFINWLLVwkLGWGFIGAPIAVAITETLLPILLFLYVVFIDGRQCwgG 1022
                       699***********************************************6667789****************99999877666665551 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.2
  Polysacc_synt_C   91 llkpllaalvmgivvylllllllgl 115 
                       + k+ ++a+++ ++   l+l ++++
       CCE28771.1 1110 TGKVTFVAALLIGL---LNLTVFSA 1131
                       44433344443333...33333333 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00038
  Polysacc_synt_C    1 vLailalsiiflslstvlssiLqglgrqkialkalvigal.vklilnllli..plfgivGaaiatvlallvvavlnlyalrrl 80  
                       vL ++a++ +f +l    +++L g+g+q i   a++i+   + l ++l l     + + G  ++ +++l++v+++ + +l ++
       CCE28771.1 1153 VLPVVAVMQVFDGLGAGAHGLLRGIGKQSIGGPANLISYYvISLPVSLALAfgLDWKLEGLWAGVTVGLIIVSIIEYTYLLKT 1235
                       688999999********************99988888864377777777776578999******************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 8349.44
//
Query:       CCE28772.1  [L=721]
Description: uncharacterized protein CPUR_02461 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-45  153.4   0.3    3.5e-23   81.5   0.1    3.4  3  Thioredoxin    Thioredoxin
    2.4e-10   40.6   0.0    0.00011   22.1   0.0    3.5  3  Thioredoxin_6  Thioredoxin-like domain
    3.8e-06   27.1   1.2      0.023   15.0   0.0    4.2  5  Thioredoxin_8  Thioredoxin-like
    0.00018   22.0   1.6      0.094   13.2   0.1    3.3  3  Thioredoxin_2  Thioredoxin-like domain
    0.00037   19.9   0.7       0.15   11.4   0.0    2.6  3  OST3_OST6      OST3 / OST6 family, transporter family
    0.00044   20.4   0.5       0.49   10.6   0.1    3.0  3  Thioredoxin_7  Thioredoxin-like
  ------ inclusion threshold ------
       0.05   12.6   0.0        0.1   11.6   0.0    1.4  1  Calsequestrin  Calsequestrin
       0.13   12.0   6.6        0.2   11.5   0.1    3.5  4  TraF           F plasmid transfer operon protein


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.1   6.7e-22   1.5e-18       3     102 ..      45     156 ..      43     157 .. 0.92
   2 !   81.5   0.1   1.6e-26   3.5e-23       4     102 ..     261     358 ..     258     359 .. 0.93
   3 ?    1.2   0.0      0.16   3.6e+02      55      84 ..     414     447 ..     401     466 .. 0.75

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 6.7e-22
                  EESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.............TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEE CS
  Thioredoxin   3 lvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd.............kvklakvdvdenedlakkyevegiPtlklfkngkevkk 87 
                  l+lt++n+++ev+k  k +lv+ y+p+CghCk +aP +++l e +               ++++a +d++ ++dl+++++v ++Pt  l+kng+  ++
   CCE28772.1  45 LELTATNWNDEVNK-TKWLLVKNYSPYCGHCKYFAPIYQTLYEFYYTsdtkdgssfekfyDFRFATLDCTMHADLCNEHNVLSFPTTSLYKNGQLFDE 141
                  67999*********.**************************998866678889********************************************* PP

                  EESS-HHHHHHHHHH CS
  Thioredoxin  88 yegarekeklaaflk 102
                  + ga++ + + ++++
   CCE28772.1 142 VLGAKSLKFVSKMIE 156
                  ****99776666665 PP

  == domain 2  score: 81.5 bits;  conditional E-value: 1.6e-26
                  ESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHH CS
  Thioredoxin   4 vltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaafl 101
                   lt+e+F++ v ++++ ++++FyApwC hC+a+ P++++la++++ k+ + +v++d+++ l+k++  +++Pt+++fk g e ++y+g r   ++++f 
   CCE28772.1 261 DLTAEAFQKRVTQTQDAWFIKFYAPWCHHCQAMGPTWQQLAKTMRTKLNIGEVNCDKEPRLCKDVRANSYPTIIFFK-GAERADYNGLRGLGDFVQFA 357
                  6899*********************************************************************8887.566999***99999988887 PP

                  H CS
  Thioredoxin 102 k 102
                  +
   CCE28772.1 358 E 358
                  6 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.16
                  EEETTTSHHHHHHTT-SSSSEEEEEETTE....E CS
  Thioredoxin  55 kvdvdenedlakkyevegiPtlklfkngk....e 84 
                  k+  ++ ++l k+++++  P l++ ++g+     
   CCE28772.1 414 KLVKTNDPKLYKRFKITTWPRLLVSREGRptyfP 447
                  55567888999***************99854443 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0008       1.8      14     118 ..     299     403 ..     294     409 .. 0.75
   2 !   22.1   0.0     5e-08   0.00011      24     102 ..     414     495 ..     397     522 .. 0.75
   3 !    5.8   0.0    0.0051        11     123     165 ..     564     607 ..     540     620 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0008
                    HHTTT-T.TSEEEEE--HH...HHHHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHHHHH---S..EEE-SHHHHHHHHTSS--EEEEEEE CS
  Thioredoxin_6  14 kvakelkgdvrfgvtkske...vadklgvke.pavllfrkfdeekvkydgekitvddlkkfieknslpl..vreltpenaeelfeeglppllllfl 103
                    + ak +++++  g ++ ++   +++++++ + p++++f++   e+++y+g      d ++f ek+      v+ ++  ++++l e++  +++++f+
     CCE28772.1 299 QLAKTMRTKLNIGEVNCDKeprLCKDVRANSyPTIIFFKG--AERADYNGL-RGLGDFVQFAEKAVDLAsgVPDVNATSFQALEEKE-DVIFVYFY 390
                    56667776677776654334558999888888*******9..55789***8.79999999999997655579999999999988888.88999999 PP

                    -TTSTTHHHHHHHHH CS
  Thioredoxin_6 104 kkddeeteklkkaie 118
                    ++    t++  +a+e
     CCE28772.1 391 DH--ATTSEDFRALE 403
                    64..44555555555 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 5e-08
                    EEEEE--HHHHHHTT--S.SEEEEEET...TTTEEEEEETH.T--HHHHHHHHHHH---SEEE-SHHHHHHHHTSS--EEEEEE CS
  Thioredoxin_6  24 rfgvtkskevadklgvke.pavllfrk...fdeekvkydge.kitvddlkkfieknslplvreltpenaeelfeeglppllllf 102
                      + t+++++++ +++++ p +l+ r    +   +++ + + + +++ + +++++  lplv+eltp na ++f+ ++ +l +l 
     CCE28772.1 414 KLVKTNDPKLYKRFKITTwPRLLVSREgrpTYFPPIT-P-DeMRDKNGVLDWMRSVWLPLVPELTPANARQIFNGKIVVLGILS 495
                    5666889999999999999999999962111112222.2.2489********************************77554443 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0051
                    HTTTT-EEEEEETTGGHHHHH.HTT--GGG-SEEEEEESSSS-E CS
  Thioredoxin_6 123 efkdkinfaladaksfkrple.ylglsssdlPvivivdsashky 165
                    + ++++ fa++d+ +++r ++  +g +  d+ +i+i d ++ +y
     CCE28772.1 564 SGRKEVGFAWVDGAYWQRWIRqTYGFDVKDGEKIIINDEDNRRY 607
                    3477899***********777699***********888444443 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.011        25       2      30 ..      60      88 ..      58     133 .. 0.91
   2 ?   -2.2   0.0       2.3   5.3e+03      41      61 ..     258     278 ..     257     280 .. 0.88
   3 !   15.0   0.0     1e-05     0.023       5      60 ..     279     330 ..     275     346 .. 0.85
   4 ?    2.4   0.0     0.089     2e+02      69      88 ..     418     437 ..     364     442 .. 0.66
   5 ?   -2.9   0.0         4     9e+03      34      70 ..     486     525 ..     478     538 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.011
                   SEEEEEE--SSSHHHHHHHHHHHHHHHHH CS
  Thioredoxin_8  2 kvvlLyfgaswcppckaftpklkelyekl 30
                   k++l+  ++ +c +ck f p  + lye +
     CCE28772.1 60 KWLLVKNYSPYCGHCKYFAPIYQTLYEFY 88
                   8999999*****************99987 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.3
                    EE-SS-HHHHHHHGGGS-TTS CS
  Thioredoxin_8  41 vsldkkeeefekylkknkkpw 61 
                    vs+d + e+f+k +++++ +w
     CCE28772.1 258 VSIDLTAEAFQKRVTQTQDAW 278
                    899999*******99998888 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 1e-05
                    EEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TT CS
  Thioredoxin_8   5 lLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkp 60 
                    ++ f+a wc++c+a+ p+ ++l ++++   k++i  v++dk+ + +++++++    
     CCE28772.1 279 FIKFYAPWCHHCQAMGPTWQQLAKTMR--TKLNIGEVNCDKEPRLCKDVRANS--Y 330
                    578***********************9..9***********988888888877..3 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.089
                    T-HHHHTT-S--TT-SEEEE CS
  Thioredoxin_8  69 kkrnklkkkynvkaiPtlvv 88 
                     +  kl+k+++++ +P+l+v
     CCE28772.1 418 TNDPKLYKRFKITTWPRLLV 437
                    334599***********987 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 4
                    TSEEEEEEE-SS-HHHHHHHGGGS...-TTSEE.EE-TT- CS
  Thioredoxin_8  34 kkveivyvsldkkeeefekylkkn...kkpwlsvpfddkk 70 
                     k++++ + ++ ++ +f   l+++    ++w+  + ++ +
     CCE28772.1 486 GKIVVLGILSHADKVAFSGSLREMksaANEWMDRQIQEFQ 525
                    5667777777777777777777774444466666665554 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0092        21       6      99 ..      60     145 ..      56     155 .. 0.71
   2 !   13.2   0.1   4.2e-05     0.094       5      96 ..     275     347 ..     271     360 .. 0.77
   3 ?    0.0   0.0       0.5   1.1e+03      32      90 ..     369     442 ..     355     450 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0092
  Thioredoxin_2   6 kpvlvvftdpdCpyCkklkkelkelddvtvrvllfp...lkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlp 97 
                    k +lv  ++p C+ Ck +    ++l     + +++     + s+ +k+ ++  a+         + + +l ++++v ++Pt+  + +g+  ++++ 
     CCE28772.1  60 KWLLVKNYSPYCGHCKYFAPIYQTL-----YEFYYTsdtKDGSSFEKFYDFRFATLD------CTMHADLCNEHNVLSFPTTSlYKNGQ-LFDEVL 143
                    6666666799999999999999998.....444455555555555566666666655......588899************66377777.777766 PP

  Thioredoxin_2  98 Gy 99 
                    G+
     CCE28772.1 144 GA 145
                    66 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.2e-05
  Thioredoxin_2   5 gkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk..eivarl 96 
                    +   ++ f++p+C  C+++  + ++l    ++     ++ +    + ++ c+ke+            l + ++ ++ Pti+f+ g     ++ l
     CCE28772.1 275 QDAWFIKFYAPWCHHCQAMGPTWQQL---AKT-----MRTK--LNIGEVNCDKEPR-----------LCKDVRANSYPTIIFFKGAerADYNGL 347
                    55567789**********99977777...555.....5555..8899********7...........*****************9944344444 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.5
  Thioredoxin_2  32 dvtvrvllfp.lkpsfepkavaiwcakekkkafkd...............ieenvelarkygvrgtPt.ivfldgk 90 
                    dv+ +   f+ l+++ + ++v ++  +  +++f++               ++   +l ++++++  P  +v  +g+
     CCE28772.1 369 DVNAT--SFQaLEEKEDVIFVYFYDHATTSEDFRAleriplslvghaklvKTNDPKLYKRFKITTWPRlLVSREGR 442
                    55555..566788888888999988888888888888899999999998555556677779999999966677776 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0028       6.3      46     104 ..      71     135 ..      62     165 .. 0.86
   2 !   11.4   0.0   6.5e-05      0.15      46     109 ..     287     343 ..     259     376 .. 0.88
   3 ?   -2.4   0.0       1.1   2.4e+03      84     104 ..     420     440 ..     415     493 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0028
   OST3_OST6  46 CelCrefepefelvakswrkd......ekskskklfFakvdfdegkdvFqklglnsaPhlllfpp 104
                 C  C+ f+p ++++ + ++++      + +k  +  Fa++d     d+ ++ ++ s P   l++ 
  CCE28772.1  71 CGHCKYFAPIYQTLYEFYYTSdtkdgsSFEKFYDFRFATLDCTMHADLCNEHNVLSFPTTSLYKN 135
                 *******************99998876445667889*********************99998876 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 6.5e-05
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpk 109
                 C+ C+ + p ++++ak +r++       l  ++v+ d+ + + ++++ ns P +++f+ +++ +
  CCE28772.1 287 CHHCQAMGPTWQQLAKTMRTK-------LNIGEVNCDKEPRLCKDVRANSYPTIIFFKGAERAD 343
                 ******************999.......88***************************9976544 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.1
   OST3_OST6  84 gkdvFqklglnsaPhlllfpp 104
                  +++++++++++ P+ll+   
  CCE28772.1 420 DPKLYKRFKITTWPRLLVSRE 440
                 678999********9998766 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0038       8.6      16      35 ..      58      77 ..      56      79 .. 0.91
   2 !   10.6   0.1   0.00022      0.49      14      36 ..     272     294 ..     263     337 .. 0.74
   3 ?   -3.9   0.0       7.6   1.7e+04      10      25 ..     375     390 ..     369     398 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0038
                   HT--EEEEE--TT-HHHHHH CS
  Thioredoxin_7 16 rgkpvlvffgaswcftCqal 35
                   + k++lv   + +c++C+ +
     CCE28772.1 58 KTKWLLVKNYSPYCGHCKYF 77
                   679***************98 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00022
                    HHHT--EEEEE--TT-HHHHHHH CS
  Thioredoxin_7  14 aergkpvlvffgaswcftCqale 36 
                     +++   ++ f a wc++Cqa+ 
     CCE28772.1 272 TQTQDAWFIKFYAPWCHHCQAMG 294
                    566667799***********985 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 7.6
                    HHHHHHHT--EEEEE- CS
  Thioredoxin_7  10 lakaaergkpvlvffg 25 
                    +++++e++  ++v+f 
     CCE28772.1 375 FQALEEKEDVIFVYFY 390
                    3555666666677764 PP

>> Calsequestrin  Calsequestrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.5e-05       0.1      94     212 ..     308     427 ..     298     432 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.5e-05
                    EEEEEEETTTTHHHHHCCT--STTEEEEEETTCEEEE-S--SHHHHHHHHHCCCS-SEEEE-SH.HHHHHHHH--SS-EEEEE-S-TTSHHHHHHH CS
  Calsequestrin  94 vgfvlvdakkeaklakklgldevdslyvlkgdevieydgefaadvlveflldlledpveliesk.lelqaferiedeikligyfkskeseyykafe 188
                    + ++ v+++ke +l+k +  +   ++  +kg e  +y+g      +v+f    ++    + + +    qa+e+ ed i +  y ++  se ++a+e
     CCE28772.1 308 LNIGEVNCDKEPRLCKDVRANSYPTIIFFKGAERADYNGLRGLGDFVQFAEKAVDLASGVPDVNaTSFQALEEKEDVIFVYFYDHATTSEDFRALE 403
                    45677999********************************9999999998877776666555431579**********9999999*********** PP

                    HHHHCCTTTSEEEEE--HHHHHHC CS
  Calsequestrin 189 eaaeefqpyikffatfdkkvakkl 212
                         +  + k+  t d k+ k++
     CCE28772.1 404 RIPLSLVGHAKLVKTNDPKLYKRF 427
                    *99999999999999999988876 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.08   1.8e+02     128     156 ..      58      86 ..      55      90 .. 0.83
   2 ?   -1.9   0.4       1.1   2.5e+03      15      47 ..     188     220 ..     178     230 .. 0.53
   3 ?   -0.1   0.2      0.31   6.9e+02      17      54 ..     239     276 ..     216     278 .. 0.84
   4 ?   11.5   0.1   8.9e-05       0.2     131     172 ..     277     320 ..     264     337 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.08
        TraF 128 akeygLlfFyrgkcpyceaqapilqafad 156
                 ++++ L+  y++ c+ c+ +api+q + +
  CCE28772.1  58 KTKWLLVKNYSPYCGHCKYFAPIYQTLYE 86 
                 56677778899*************99865 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
        TraF  15 kkekakppkaakpalkeptseesatesaaelrk 47 
                 k++   p k+ + ++ ++t+++s tesa+++  
  CCE28772.1 188 KPAGDSPAKTGDTSADDKTEKKSTTESAKKVAD 220
                 444444444555555555555555555555443 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.31
        TraF  17 ekakppkaakpalkeptseesatesaaelrkeleelld 54 
                 e +k++k++kpa+++ t+ +s + +a++++k++ +++d
  CCE28772.1 239 ELEKERKPNKPAVTPNTDGVSIDLTAEAFQKRVTQTQD 276
                 5567778889999999***************9998876 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 8.9e-05
        TraF 131 ygLlfFyrgkcpyceaqapilqafadky..glevraVsvdgrpl 172
                 + ++ Fy++ c  c+a+ p+ q++a+++  +l +  V++d++p 
  CCE28772.1 277 AWFIKFYAPWCHHCQAMGPTWQQLAKTMrtKLNIGEVNCDKEPR 320
                 55788********************9874477888899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4824.72
//
Query:       CCE28773.1  [L=189]
Description: uncharacterized protein CPUR_02462 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-07   32.2   0.1    1.9e-07   31.3   0.1    1.4  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.4e-06   27.5   0.0    3.7e-06   26.9   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    7.1e-06   25.9   0.2    1.8e-05   24.6   0.1    1.6  2  FR47             FR47-like protein
  ------ inclusion threshold ------
      0.018   15.5   0.1      0.035   14.5   0.0    1.5  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
      0.068   12.9   0.0       0.11   12.2   0.0    1.3  1  PanZ             Acetyltransferase (GNAT) domain, PanZ


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.1   5.4e-11   1.9e-07      41     116 ..      85     160 ..      45     161 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 5.4e-11
                     TTEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  41 dgeliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklG 116
                     ++e+ G ++l+  +  +   ++y+e l V++++r++G ++ L+ +le++a+  g + + l+ e+d   a  + +klG
      CCE28773.1  85 GPEVMGVVMLWVPYSeTGASRGYVEKLLVHRNFRRRGGARILMSTLEREALAIGKTMLLLHAESD-SLAETVCKKLG 160
                     378*************9999*********************************998877755444.44555554565 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     1e-09   3.7e-06      50     111 ..     104     166 ..      84     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1e-09
  Acetyltransf_10  50 dgshisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklGFkavge 111
                      ++++++ l V++++r++G ++ L+ ++e+ea   g     l++++++ a+ + +klG+++ g+
       CCE28773.1 104 SRGYVEKLLVHRNFRRRGGARILMSTLEREALAIGKTMlLLHAESDSLAETVCKKLGYVQSGR 166
                      5679**************************98888777999999999************9976 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   4.9e-09   1.8e-05      22      78 ..     106     162 ..     100     166 .. 0.94
   2 ?   -2.5   0.0       1.5   5.3e+03      68      76 ..     181     189 .]     179     189 .] 0.82

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 4.9e-09
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-E CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfe 78 
                 g++  l v+ ++rrrG ++ l + l +e  + gkt+ll+ ++s++ ++ + +klG+ 
  CCE28773.1 106 GYVEKLLVHRNFRRRGGARILMSTLEREALAIGKTMLLLHAESDSLAETVCKKLGYV 162
                 88889**************************************************96 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.5
                 HHHHHHHHT CS
        FR47  68 sirlyeklG 76 
                 +  +y+klG
  CCE28773.1 181 ATFMYKKLG 189
                 6679****9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   9.8e-06     0.035      15      75 ..      89     162 ..      67     163 .. 0.61
   2 ?   -2.9   0.0       2.8     1e+04      68      73 ..     184     189 .]     170     189 .] 0.75

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.8e-06
                     EEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHHH...TT..SEEE..EEEEEE....THH.HHHHHHHHTTEE CS
  Acetyltransf_7  15 vGfialslld.......aeitrlaVdpeyrgkGiGraLlea...ae..kgii..leqlel....nae.kaikfYeklGFe 75 
                     +G + l++         ++ ++l V+ ++r++G +r L+     ++   g +  l    l    + +  a+   +klG++
      CCE28773.1  89 MGVVMLWVPYsetgasrGYVEKLLVHRNFRRRGGARILMSTlerEAlaIG-KtmL----LlhaeS-DsLAETVCKKLGYV 162
                     5666555555666655566777*****************95333112322.1221....122122.13566677777776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.8
                     HHHHTT CS
  Acetyltransf_7  68 fYeklG 73 
                     +Y+klG
      CCE28773.1 184 MYKKLG 189
                     799998 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.2e-05      0.11      60     118 ..     104     159 ..      98     168 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.2e-05
        PanZ  60 keaelsdlcVRevTRrRGVgsyLleearrqaPevkswvlaeedvkeldlavlqafleal 118
                 + + +++l V +  RrRG ++ L+    r+a ++ +++l  ++ ++   +++++  ++l
  CCE28773.1 104 SRGYVEKLLVHRNFRRRGGARILMSTLEREALAIGKTMLLLHAESD---SLAETVCKKL 159
                 567899*******************************999988553...4444444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1389.17
//
Query:       CCE28774.1  [L=340]
Description: uncharacterized protein CPUR_02463 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2693.58
//
Query:       CCE28775.1  [L=313]
Description: uncharacterized protein CPUR_02464 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.064   13.6   0.0       0.21   12.0   0.0    1.7  2  DUF2263   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2263  Uncharacterized protein conserved in bacteria (DUF2263)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.2e-05      0.21      43     118 ..      39     113 ..      22     136 .. 0.81
   2 ?   -1.5   0.0      0.17     3e+03      21      48 ..     260     284 ..     248     307 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.2e-05
                 .......HHHHHHEEES--HHHHHHHHHHH-SS--EEEEE--SSSTTTTGGGT--SHHHHHHHHBSHHHHHTT-HH CS
     DUF2263  43 astseeeeeetkievteestleaarrlvkeegekvavLNfASaknpGGGflnGakAQEEsLarsSaLyasllkaee 118
                  ++++++++  ++ v++ + ++ a  ++k+ g +v  +  A+++ pG          EE+ + +S+L+ +l++ ++
  CCE28775.1  39 LTRHTQSTNPPEFRVVHGDPVKVALDYAKR-GIRVPFICAANRRGPGLRHHDQRPTYEEDFCDRSNLFDTLTRTQS 113
                 345667778899***************988.99**************************************99553 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.17
                 EE-HHHHHHHHHT-EEE-H......... CS
     DUF2263  21 vdlreaveaavkgtklyspkkaastsee 48 
                  +++e ++ a++ t ly++    +++++
  CCE28775.1 260 EKINEGYRVAKEDTLLYTQG---ESPSS 284
                 46777888888888888762...22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2502.55
//
Query:       CCE28776.1  [L=330]
Description: uncharacterized protein CPUR_02465 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0053   17.1   0.0     0.0096   16.3   0.0    1.4  1  DUF2263   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2263  Uncharacterized protein conserved in bacteria (DUF2263)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.4e-07    0.0096      42     122 ..      41     123 ..      15     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.4e-07
                 ........HHHHHHEEES--HHHHHHHHHHH-.SS--EEEEE--SSSTTTTGGGT--SHHHHHHHHBSHHHHHTT.-HHHHHH CS
     DUF2263  42 aastseeeeeetkievteestleaarrlvkee.gekvavLNfASaknpGGGflnGakAQEEsLarsSaLyasllk.aeefYea 122
                 ++++s+e  ++ ++ v+  + ++ a  +  e+ g +v  +  A+ + pG  ++      EE+ +r+ +L+ +l+   + +Y +
  CCE28776.1  41 QHTQSTEPPKSPEFRVVAGDPVKVALDYGTENgGIRVPFICAANSSAPGCRYRDHCLTYEEEFCRRGNLFDTLTMaDTPLYPI 123
                 4567788899999***************9888899*************************************99845556654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2701.69
//
Query:       CCE28777.1  [L=319]
Description: uncharacterized protein CPUR_02466 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 2249.98
//
Query:       CCE28778.1  [L=343]
Description: uncharacterized protein CPUR_02467 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00044   20.7   0.0    0.00091   19.6   0.0    1.5  1  DUF2263   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2263  Uncharacterized protein conserved in bacteria (DUF2263)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.1e-08   0.00091      46     143 ..      45     141 ..      24     143 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.1e-08
                 ....HHHHHHEEES--HHHHHHHHHHH-.SS--EEEEE--SSSTTTTGGGT--SHHHHHHHHBSHHHHHTT.-HHHHHHHHHH--TT--S-EEEEEEEE CS
     DUF2263  46 seeeeeetkievteestleaarrlvkee.gekvavLNfASaknpGGGflnGakAQEEsLarsSaLyasllk.aeefYeahrakrsplysdamiYSpeVp 142
                 s++  e  ++ ++  + ++ a  ++ ++ g +v  +  A + npG G        EE+ +r+S+L  +l++ ++ +Y++     +p+ +   i+S +V 
  CCE28778.1  45 STDPPEPLEFRIVTGDPVKVAIDYATDNgGIRVPFICAAHRYNPGRGHPVERLTYEEQFCRRSNLRDTLTRkWPGMYDT---PLYPISETGGIFSNRVA 140
                 45556667788888888888888887777999999**********************************999*****55...57777777788888887 PP

                 E CS
     DUF2263 143 v 143
                 v
  CCE28778.1 141 V 141
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2750.94
//
Query:       CCE28779.1  [L=365]
Description: uncharacterized protein CPUR_02468 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.035   13.6   0.7       0.33   10.4   0.1    2.1  2  Methyltransf_4  Putative methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.012   2.2e+02      71      83 ..     254     266 ..     247     275 .. 0.88
   2 ?   10.4   0.1   1.9e-05      0.33      81      93 ..     337     349 ..     318     353 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.012
                     TSEEEEEEES--- CS
  Methyltransf_4  71 gslekifilFPDP 83 
                     g+++ +++ FPDP
      CCE28779.1 254 GQFKYVVFAFPDP 266
                     68999******** PP

  == domain 2  score: 10.4 bits;  conditional E-value: 1.9e-05
                     -----SGGGGGGS CS
  Methyltransf_4  81 PDPwfKkrhhKrR 93 
                      DPw K+rh+K+R
      CCE28779.1 337 QDPWGKRRHNKWR 349
                     5***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 3018.66
//
Query:       CCE28780.1  [L=331]
Description: uncharacterized protein CPUR_02469 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.5   0.0      0.024   15.0   0.0    1.2  1  DUF2263   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2263  Uncharacterized protein conserved in bacteria (DUF2263)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.3e-06     0.024      74     145 ..      75     144 ..      21     145 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-06
                 SS--EEEEE--SSSTTTTGGGT--SHHHHHHHHBSHHHHHTT.-HHHHHHHHHH--TT--S-EEEEEEEEEEE CS
     DUF2263  74 gekvavLNfASaknpGGGflnGakAQEEsLarsSaLyasllk.aeefYeahrakrsplysdamiYSpeVpvfr 145
                 + +v  +  A +++pGG +++  +  E  L+r+S+L  +l++ ++++     ++++p+ s   i S  V v r
  CCE28780.1  75 RIRVPFICSAHDRRPGGNWRGELSGYEGRLCRRSNLSIMLSTpPPDMR---DTSHYPIPSTGGILSDPVVVHR 144
                 4555566778899**************************999555544...4456777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2520.06
//
Query:       CCE28781.1  [L=293]
Description: related to ribonucleases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-20   73.7   0.0    5.1e-18   65.9   0.0    2.2  1  Ribonuclease_T2  Ribonuclease T2 family
  ------ inclusion threshold ------
       0.18   11.8   2.0       0.42   10.6   2.0    1.5  1  DUF4801          Domain of unknown function (DUF4801)


Domain annotation for each model (and alignments):
>> Ribonuclease_T2  Ribonuclease T2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   5.7e-22   5.1e-18       3     173 ..      57     249 ..      55     257 .. 0.62

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 5.7e-22
                      EEEEEEE-HHHHSS..SSS----.-TS--SS-EEEEEEEE-TTS-.--S--TTS---GGGGGG.GHHHHHHHS----SHHHHHHHHHHTGGGGT CS
  Ribonuclease_T2   3 lllltqqWpgsfCeektkkecekvpdkpaedftihGLwpdnsgksypenCnssekfdekeisd.llaelnkyWpslikkslwkhEwekHGtCaa 95 
                      ll+ tq W  +f  ++   e   +    +++++ihGLwpd  ++sy+++C+ s+++d k   + + ++ +   +  ++++     +  HG  + 
       CCE28781.1  57 LLVATQLW-STFTGRE--SE--GQV-YAKNSWSIHGLWPDFCNGSYTQYCDLSRQYDPKPSPNtTNSKPDGVRVPPYTGEPIDGWFAPHGKLSL 144
                      67889999.5555422..22..212.4578***********8889************6655220222222222222234444444555555443 PP

                      T...TS.........-SHHHHHHHHHHHHTT--HHHHHHHTT--S.SS-EEEHHHHHHHHHHH...HSS--.EEEE.....EE..-........ CS
  Ribonuclease_T2  96 s.lpal.........ksehkYFqkalelrkkldlkkvLakagIvPsktksyslseikdalkka...igvkp.kieC.....skdsk........ 162
                          ++         ++  ++F+++l+++++l+++++L +agI+Ps+t+sy++++i++al+++    ++ p  i C     +   +        
       CCE28781.1 145 LsSMKKhwppnssphDDLFTFFETVLRWHRTLPTFQWLLDAGIQPSNTTSYTYAAIQAALTQTpdgQHHPPaFIGCggprfN---Etlrgrgsl 235
                      3111112233333323459*****************************************9983322222357888544321...123333333 PP

                      ...-EEEEEEEEEE CS
  Ribonuclease_T2 163 ...eqalsevelcl 173
                         ++ l+e+++ +
       CCE28781.1 236 dngRTELNEIWYYF 249
                      33347777777765 PP

>> DUF4801  Domain of unknown function (DUF4801)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.0   4.6e-05      0.42      18      47 ..      12      40 ..       9      44 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.6e-05
     DUF4801 18 iCdslessekaarreHCgradCvlecvCgy 47
                +C +++    +a  +HC ++  vl c+C  
  CCE28781.1 12 LCVVVAHGATPA-LDHCASIKPVLSCSCNA 40
                577777666664.9**************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2177.87
//
Query:       CCE28782.1  [L=388]
Description: related to translocation protein sec62 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-69  233.8   1.6    2.5e-69  233.1   1.6    1.3  1  Sec62     Translocation protein Sec62
  ------ inclusion threshold ------
       0.07   11.9   0.1       0.12   11.2   0.1    1.3  1  DUF2207   Predicted membrane protein (DUF2207)
        2.6    8.8   8.1        0.9   10.3   4.5    2.1  2  PrgI      PrgI family protein
        5.3    6.3   7.2        8.4    5.6   7.2    1.2  1  Corona_M  Coronavirus M matrix/glycoprotein


Domain annotation for each model (and alignments):
>> Sec62  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.1   1.6   5.7e-73   2.5e-69       1     213 [.     131     335 ..     131     339 .. 0.93

  Alignments for each domain:
  == domain 1  score: 233.1 bits;  conditional E-value: 5.7e-73
       Sec62   1 kkkdffrakkvvralksekekkkskkkkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkeekkkkkkkkkkvkleieeeqefvddnevYv 99 
                 ++kd+f++k+++ral+s++++k++kk++  l+e++++++ e++fk+l+ s+lalrv+k + +   +     kk k+ k++++++ie++q++  d+++Yv
  CCE28782.1 131 ERKDMFKVKRAMRALQSPAYEKARKKNP-LLPEITDRASLENTFKLLPLSMLALRVSKIEPEAGPNG----KKAKRVKGQWSVRIEQQQDA-GDEMYYV 223
                 589***********************98.9****************************988877776....699*****************.******* PP

       Sec62 100 WiYepkqlktlligllvvvailavvlFPLWPaelrkgvyYLSiaalgllglilalaivRlilflivllvtkgklhlWlfPnlfeDvGfldSFrPlYeye 198
                 W+Ye++q+k+ ++++l++v i++vvl+PLWP  lr++v+Y S+++lgllgl++++ai+R+ilf+i++++++++  lWl+Pnl+eDv+f+dSFrP+++++
  CCE28782.1 224 WLYEGSQVKRQVYAALALVLIFIVVLYPLWPLALRQCVFYGSWGLLGLLGLFFVMAIFRVILFCITYFAVPPG--LWLYPNLWEDVSFMDSFRPVWAWH 320
                 *************************************************************************..************************ PP

       Sec62 199 ekdkkkkkkkkkkkk 213
                 e+ ++kkkkkk k++
  CCE28782.1 321 ESASEKKKKKKLKSS 335
                 766555555444443 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   2.6e-05      0.12     340     432 ..     164     284 ..     117     294 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.6e-05
     DUF2207 340 kkyakkskk......................kakkfkkalkkwksavkk.......kergyfdkkgkkklkklsalglgliilglilillallllvlll 409
                  ++a+++++                      ++kk k+ + +w   +++        ++ ++ + ++ k++ + al+l+li+++++  l+ l+l ++ +
  CCE28782.1 164 TDRASLENTfkllplsmlalrvskiepeagpNGKKAKRVKGQWSVRIEQqqdagdeMYYVWLYEGSQVKRQVYAALALVLIFIVVLYPLWPLALRQC-V 261
                 4444444445555555555555555666666999999999999999999999999777777777778888888888888888888877777777777.6 PP

     DUF2207 410 vfllilllillliaiivlllfsr 432
                 ++ ++ ll+ll ++++++++  +
  CCE28782.1 262 FYGSWGLLGLLGLFFVMAIFRVI 284
                 66666666666666666666544 PP

>> PrgI  PrgI family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.97   4.3e+03      20      35 ..     233     248 ..     232     256 .. 0.49
   2 ?   10.3   4.5    0.0002       0.9      16      61 ..     254     298 ..     250     334 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.97
        PrgI  20 RQliflvlallvaigl 35 
                 RQ+   ++ +l+ i++
  CCE28782.1 233 RQVYAALALVLIFIVV 248
                 5555555555533333 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0002
        PrgI  16 gLtlRQliflvlallvaiglylllrafleelasvlvillavPvaal 61 
                 +L lRQ++f+++ +l++++ ++++ a++  + ++++++ avP  ++
  CCE28782.1 254 PLALRQCVFYGSWGLLGLLGLFFVMAIF-RVILFCITYFAVPPGLW 298
                 5899************999999999999.78888888889997665 PP

>> Corona_M  Coronavirus M matrix/glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.2    0.0019       8.4      45      94 ..     243     292 ..     223     301 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0019
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--S.----- CS
    Corona_M  45 glkllvlWllWPlvlalsvlsaeyesnyvtlgiaiilavvtlllw.vsyfv 94 
                  + ++vl+ lWPl+l   v+  ++    + lg+ +++a++ ++l+ ++yf+
  CCE28782.1 243 LIFIVVLYPLWPLALRQCVFYGSWGL-LGLLGLFFVMAIFRVILFcITYFA 292
                 466899***************99975.789999999999988877367886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1440  (0.0803168); expected 358.6 (0.02)
Passed bias filter:                      758  (0.0422779); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 2833.97
//
Query:       CCE28783.1  [L=137]
Description: related to RNA polymerase II holoenzyme/mediator subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-46  156.9   4.2    4.4e-46  156.7   4.2    1.0  1  Med21       Subunit 21 of Mediator complex
     0.0073   15.7   0.3       0.84    9.0   0.0    2.1  2  GAS         Growth-arrest specific micro-tubule binding
  ------ inclusion threshold ------
      0.012   15.6   1.3      0.012   15.6   1.3    2.1  3  Med9        RNA polymerase II transcription mediator complex 
      0.025   14.6   2.8      0.054   13.5   2.8    1.6  1  TMF_DNA_bd  TATA element modulatory factor 1 DNA binding


Domain annotation for each model (and alignments):
>> Med21  Subunit 21 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.7   4.2   9.9e-50   4.4e-46       1     143 [.       1     135 [.       1     136 [. 0.93

  Alignments for each domain:
  == domain 1  score: 156.7 bits;  conditional E-value: 9.9e-50
       Med21   1 MaDrLTqLQdcldqLaeqfyatlgylntshdpsplseqdpsspsaapalakipqeekeepepdspeefaatqrelardlilkeqqIeyLIssLPgigss 99 
                 M+DrLTqLQd++dqLa+qf+a+l++++ +hd++pl ++d+   s++           +++++ +p+efaa + elardli+keqqIe+LI +LPg+++s
  CCE28783.1   1 MGDRLTQLQDAVDQLAQQFVASLHFVHMRHDLQPLGPNDKIRHSKHDR--------RQKEDSLPPDEFAAGLTELARDLIIKEQQIEVLICNLPGLDNS 91 
                 9***********************************988844444443........456689************************************* PP

       Med21 100 eeeqeerikeLeeelreveeereekvkekeellkkveellrava 143
                 e++qe++ik+Lee+l+++e++r e++ke++++l +++ ++r+v+
  CCE28783.1  92 EHDQERSIKDLEEDLKAAEAQRLEALKERDHILGQLDTVIRSVR 135
                 ******************************************98 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00019      0.84     113     163 ..       3      53 ..       1      57 [. 0.87
   2 !    5.3   0.2    0.0025        11      95     136 ..      93     134 ..      62     136 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00019
         GAS 113 qrfekvekerdelykkfeaaiqevqqktglknllLekklkalqeelEkkea 163
                 +r+++++++ d+l ++f a+++ v+ + +l+ l    k+ + +++  +ke 
  CCE28783.1   3 DRLTQLQDAVDQLAQQFVASLHFVHMRHDLQPLGPNDKIRHSKHDRRQKED 53 
                 6899**************************999888888888877777765 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0025
         GAS  95 kelekelkdlkwehevleqrfekvekerdelykkfeaaiqev 136
                 +++e+ +kdl+++ +  e +  ++ kerd +  + +++i+ v
  CCE28783.1  93 HDQERSIKDLEEDLKAAEAQRLEALKERDHILGQLDTVIRSV 134
                 566777777777777777777777777777777777776665 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1   4.8e+03      58      66 ..       7      15 ..       3      24 .. 0.47
   2 ?   -3.1   0.1         2   8.9e+03      58      69 ..      40      51 ..      38      55 .. 0.47
   3 ?   15.6   1.3   2.8e-06     0.012      40      69 ..      80     109 ..      65     121 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
        Med9 58 eieeleeql 66
                ++++  +ql
  CCE28783.1  7 QLQDAVDQL 15
                222222222 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2
        Med9 58 eieeleeqlakK 69
                +i++ ++  ++K
  CCE28783.1 40 KIRHSKHDRRQK 51
                444444444444 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 2.8e-06
        Med9  40 elirelpgidrsveeqeaeieeleeqlakK 69 
                  li +lpg+d s ++qe+ i++lee l++ 
  CCE28783.1  80 VLICNLPGLDNSEHDQERSIKDLEEDLKAA 109
                 57889*********************9864 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.8   1.2e-05     0.054       3      51 ..      67     115 ..      65     127 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
  TMF_DNA_bd   3 lekklkeKDeqIaqLmeEGekLskkelklnntikkLrkknkelekeike 51 
                 l+ +l  K++qI+ L  ++  L  +e++++ +ik L +++k +e +  e
  CCE28783.1  67 LARDLIIKEQQIEVLICNLPGLDNSEHDQERSIKDLEEDLKAAEAQRLE 115
                 5666777*************************************66443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1196.79
//
Query:       CCE28784.1  [L=235]
Description: probable pyrimidine 5`-nucleotidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-11   44.1   0.0      1e-10   42.3   0.0    1.7  1  Hydrolase       haloacid dehalogenase-like hydrolase
    3.6e-10   40.2   0.0    5.6e-10   39.6   0.0    1.3  1  HAD_2           Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.19   11.8   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.7e-14     1e-10       4     200 ..      14     183 ..      12     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 1.7e-14
                 EEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHH.HHHHHHH....HHHH...HHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx....xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   4 vvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkal.vaaakar....sgal...tgfatfigrgayaigkpewltaldippdlgaaigsaq 94 
                 ++fD+d+ L+  +  v d++v +                   + + +ak++     +a+   +++ t      y    + +++++              
  CCE28784.1  14 LFFDVDNCLYSPSTKVQDLMVDL-------------------IdQYFAKHLelpwDEAVrlhKEYYT-----NYGLAIEGLVRHH-------------- 74 
                 78999999999999999999999...................3244444445554222245677777.....8888888888888.............. PP

                 HHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGE.SEEEEHHCES..STTTSHHHHHHHHHHHT.S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxx..xxxxxxxxxxxxxxxxx.x RF
   Hydrolase  95 sqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyf.daviasdiet..vakpspegkvaaireLq.g 188
                  q    a++ a+++  + ++d +k+  e++ +++ + + +++v+l t+   ++a+r+ + lG +d f   +++ + +   + kp+p+++++a++e    
  CCE28784.1  75 -QIDPLAYN-AEVDDALPLQDIIKPDAELRRLLQDIDRSKVKVWLFTNAYVTHAKRVVRLLGvEDMFdGLTFCDYSSRplICKPDPKMYQKAMQEADvS 171
                 .55555555.8***********66666666*************************************55555555555******************955 PP

                 TGGGEEEEESSH CS
                 xxxxxxxxxxxx RF
   Hydrolase 189 kpeevamVGDgv 200
                 + +++ +V+D+ 
  CCE28784.1 172 DVKDCFFVDDSY 183
                 5999******85 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   9.4e-14   5.6e-10       3     175 ..      16     196 ..      14     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 9.4e-14
       HAD_2   3 FDlDgTlldteeliiqafnelleey..........glselseeelrkliglslrellrklgeseeeeekieellrkyneekkk.kevkpydgvkelLee 90 
                 FD+D+ l+  ++ + + +  l+++y          +      +e+ + +gl  + l+r+ +++         +  ++ + +   + +kp  +++ lL++
  CCE28784.1  16 FDVDNCLYSPSTKVQDLMVDLIDQYfakhlelpwdEA-VRLHKEYYTNYGLAIEGLVRHHQID------PLAYNAEVDDALPLqDIIKPDAELRRLLQD 107
                 9999999988888888888888777554444443211.2223344444555555555555553......33444444444322589************* PP

       HAD_2  91 LkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekk...KPdpeviekaleklklkk.eeviyvGDsptDieaakkagikv 175
                 + + ++k+ + T+     +++ ++ lg+e++Fd     +  +++   KPdp++++ka+++ +++  +++++v Ds      ak +g ++
  CCE28784.1 108 IDRSKVKVWLFTNAYVTHAKRVVRLLGVEDMFDGLTFCDYSSRPlicKPDPKMYQKAMQEADVSDvKDCFFVDDSYLNCTKAKDFGWTA 196
                 *************************************************************87643899***********9*9999876 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.2e-05      0.19       4      46 ..     155     197 ..     152     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.2e-05
                     TTSSHHHHHHHHHH.---GGGEEEEES-TTTHHHHHHHCT-EEE CS
  Hydrolase_like   4 KPepemydfalevl.gsdpeevlmiGDrlatDiagAnnaGwksv 46 
                     KP p my  a+++   sd ++++++ D+ +     A+++Gw+ +
      CCE28784.1 155 KPDPKMYQKAMQEAdVSDVKDCFFVDDS-YLNCTKAKDFGWTAA 197
                     *************966779*********.888999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1714.89
//
Query:       CCE28785.1  [L=909]
Description: uncharacterized protein CPUR_02474 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0034   17.6   4.7     0.0034   17.6   4.7    3.9  3  ATG16     Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   4.7   1.9e-07    0.0034     106     162 ..      95     151 ..      91     181 .. 0.92
   2 ?  -11.5  14.3         1   1.8e+04      66      85 ..     263     294 ..     200     361 .. 0.57
   3 ?   -5.5   6.3         1   1.8e+04      50      58 ..     458     476 ..     375     537 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.9e-07
       ATG16 106 elneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsa 162
                 ++++el+  ++++++d++  +el+++r++le++lkd  e+lr  ++++ +   E+++
  CCE28785.1  95 AAETELKSSRAEIRSDQRVTDELQTQRERLERALKDEVEQLRAERAAITEPSAEIDS 151
                 6899******************************************99988777766 PP

  == domain 2  score: -11.5 bits;  conditional E-value: 1
       ATG16  66 sq............snskqsakiqsleqklaq 85 
                 ++            + + + ++ qs++q+l+q
  CCE28785.1 263 ANltlhkdvlannvHPQLEGSSQQSSNQQLTQ 294
                 11233333333333222222333333333333 PP

  == domain 3  score: -5.5 bits;  conditional E-value: 1
       ATG16  50 s..........sksskksa 58 
                            +k++k+ +
  CCE28785.1 458 GggrtqakgngKKWEKQEE 476
                 1333222222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1310  (0.073066); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 5785.69
//
Query:       CCE28786.1  [L=977]
Description: uncharacterized protein CPUR_02475 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-29   99.4   2.0    2.1e-06   27.4   0.0    6.4  6  KH_1      KH domain


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.2e-10   2.1e-06       9      65 ..     270     337 ..     265     338 .. 0.89
   2 !    6.5   0.0   0.00042       7.5       4      53 ..     350     397 ..     347     410 .. 0.80
   3 ?   -1.2   0.0       0.1   1.8e+03      49      66 .]     459     476 ..     449     476 .. 0.86
   4 !   12.8   0.2   4.6e-06     0.082       3      37 ..     490     524 ..     488     535 .. 0.86
   5 !   27.1   0.4   1.5e-10   2.8e-06       2      45 ..     557     603 ..     556     616 .. 0.82
   6 !   17.9   0.0   1.1e-07     0.002      22      64 ..     663     702 ..     647     704 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.2e-10
                 GHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT............T.-EEEEEE.SHHHHHHHHHHHH CS
        KH_1   9 slvgriIGkgGsnIkeIreetgakIkvpk.sedeg.........sderevtisG.speavekAkelie 65 
                 sl+ ++ G+  +nIk I++ tg+ I +p+  +             d+  + i+G +p+a+e Ak++++
  CCE28786.1 270 SLHQLVCGRHRKNIKLIESSTGTAIYFPPlFSQMYrycpqnatrRDPADIFITGeTPQAIELAKQKLH 337
                 6899***************89*******65444447*****************************987 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00042
                 EEEGGGHHHHHHTGGGHHHHHHHHHH.T-EEEEESSTT...T.-EEEEEE.S CS
        KH_1   4 ilvPsslvgriIGkgGsnIkeIreet.gakIkvpksedegsderevtisG.s 53 
                 +++P+ ++ +i+  +  ++++I e t g++I +p + ++  + ++v+++G +
  CCE28786.1 350 VTIPAAKIDCILLDRLDKVRKILE-TnGTYIMFP-PLAC--QRTMVRVQGcE 397
                 678888888888888899******.77*******.7776..89999999855 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.1
                 EEEESHHHHHHHHHHHHH CS
        KH_1  49 tisGspeavekAkeliee 66 
                 t +Gs +av+ A++ i+e
  CCE28786.1 459 TATGSDDAVKCALAIISE 476
                 669*9********99975 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 4.6e-06
                 EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES CS
        KH_1   3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpk 37 
                 +i++ +++  ++ Gk++ +I++I+ +++++I +++
  CCE28786.1 490 KIELANEHKEFVSGKKNGKINKIMGQSNVQIIFDG 524
                 67778889999*************99******985 PP

  == domain 5  score: 27.1 bits;  conditional E-value: 1.5e-10
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT.......T. CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg....sde 45 
                 ++++vP +++ riIG gG++I++I+++  + +k+  + +e+     ++
  CCE28786.1 557 ISFHVPDQYHKRIIGIGGQHIQRIMKKHSVFVKFS-NAMERggmgRED 603
                 6799**********************88******9.555444466444 PP

  == domain 6  score: 17.9 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHT-EEEEESSTT...T.-EEEEEESHHHHHHHHHHH CS
        KH_1  22 IkeIreetgakIkvpksedegsderevtisGspeavekAkeli 64 
                 I e++++ ++kI++p+  +    ++evt++G++ +v ++++++
  CCE28786.1 663 IDELEQKFNCKINFPS-TEV--ASDEVTVTGPQWQVPHCVDEL 702
                 789***99*******6.333..69*******988899999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 6655.05
//
Query:       CCE28787.1  [L=685]
Description: related to E.coli uncharacterized protein and weak similarity to RNA helicase MSS116 / YDR194c [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-25   88.9   0.0    9.5e-25   87.6   0.0    1.8  2  ResIII         Type III restriction enzyme, res subunit
    4.2e-14   52.8   0.1    9.6e-13   48.5   0.0    2.5  2  Helicase_C     Helicase conserved C-terminal domain
    1.9e-12   47.3   0.1    4.4e-12   46.1   0.1    1.7  1  DEAD           DEAD/DEAH box helicase
    3.2e-07   30.3   0.5    9.2e-07   28.8   0.1    1.8  2  SWI2_SNF2      SWI2/SNF2 ATPase
     0.0079   15.5   0.0      0.013   14.8   0.0    1.2  1  DUF2075        Uncharacterized conserved protein (DUF2075)
     0.0098   14.8   0.1      0.016   14.1   0.1    1.3  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.018   14.3   0.0    1.2  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
      0.011   16.1   0.3      0.028   14.8   0.1    1.8  2  AAA_16         AAA ATPase domain


Domain annotation for each model (and alignments):
>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   4.3e-28   9.5e-25       3     170 ..      43     205 ..      41     206 .. 0.87
   2 ?   -2.8   0.0       2.4   5.5e+03      50      80 ..     284     314 ..     238     335 .. 0.65

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 4.3e-28
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.. CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee...kflflvprkslleqtleefkkflseaykeigkkvsgdkkkake 98 
                 +lr+yQ e+i+++l++l+ +++kr+ i +aTG+GKT++ ++li++++  ++     ++l+l++r++l+eq+ ++ +  +++++     +++  + +a  
  CCE28787.1  43 KLRDYQLECIQSVLSSLE-QGQKRVGISLATGSGKTVIFTQLIDKIRARREDGrgdRTLILAHRRELVEQAARHCRLAYPDKT----IEIEMGSLHA-- 134
                 89***************9.***************************9976655899************************985....3444444444.. PP

                 .....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT-.......--SEEEEEESS-S CS
      ResIII  99 kdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekf.......keavllglTATpe 170
                   +  ++i+++++qs++++        ++++++ f++i++DEaH++ a + + + l++f       ++ +l+g++AT+ 
  CCE28787.1 135 --TGAADITIASVQSITSKD-----RLHKFSPSDFKLILVDEAHHIVA-SGYLKTLKHFgldqkqpDSPTLVGVSATFS 205
                 ..5699**************.....89*********************.8777776666665443344*********97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.4
                 S.....-EEEEESSHHHHHHHHHHGGGGTGG CS
      ResIII  50 kkgkeekflflvprkslleqtleefkkflse 80 
                 k+++++ +l+++  ++ +  + ++f+++  +
  CCE28787.1 284 KAHDRKSTLVFCVDLAHVAALTNRFRQYGYD 314
                 3333444444444444444455555555444 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.15   3.4e+02      16      30 ..      74      88 ..      63     168 .. 0.71
   2 !   48.5   0.0   4.3e-16   9.6e-13      10     110 ..     282     382 ..     272     383 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.15
                TSEEEEEESSHHHHH CS
  Helicase_C 16 ggkilifvntidrle 30
                 gk++if++ id++ 
  CCE28787.1 74 SGKTVIFTQLIDKIR 88
                678888888888663 PP

  == domain 2  score: 48.5 bits;  conditional E-value: 4.3e-16
                 HHHTTTTSEEEEEESSHHHHHH.HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHH CS
  Helicase_C  10 lkleeeggkilifvntidrlek.vklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqri 104
                 +++ ++++ +l+f+    ++   ++     +   g+ +  ++ge+   +r eil++f++ge+ vL+   v  +G dip++++++   + r+   ++q+i
  CCE28787.1 282 IHKAHDRKSTLVFCVDLAHVAAlTNR----FrqyGYDARFVTGETHRLDRSEILDAFKRGEFPVLVNCGVFTEGTDIPNIDCIVLGRPTRSRNLLVQMI 376
                 4678999***********99544455....34469**************************************************************** PP

                 TTSSST CS
  Helicase_C 105 GRtgRa 110
                 GR +R 
  CCE28787.1 377 GRGMRL 382
                 **9995 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.1     2e-15   4.4e-12       2     172 ..      46     208 ..      45     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 2e-15
                 HHHHHHHHHHH.....TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH CS
                 xxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.....gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld 95 
                 d+Q e+i+ +l     g++ v ++ +TGsGKT +f   + +i +++++ +g ++li++  reL+eq +++++      d         ++ + ++  l+
  CCE28787.1  46 DYQLECIQSVLssleqGQKRVGISLATGSGKTVIFTQLIDKIRARREDGRGDRTLILAHRRELVEQAARHCRLAYP--D---------KTIEIEMGSLH 133
                 7899******988886668***************998888888777999999******************976555..3.........33333333443 PP

                 TT..CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HH CS
                 xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD  96 ng..vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kd 172
                 ++  +di+++  + + +  + +k++ s+++++ +DEa+ +  +g+ +++++    l+q++ d +   +++ +SAT++ +d
  CCE28787.1 134 ATgaADITIASVQSITSKDRLHKFSPSDFKLILVDEAHHIVASGYLKTLKH--FGLDQKQPDSP---TLVGVSATFSrFD 208
                 22247888887777777555567889***********************99..34445555555...599*****99766 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1   4.1e-10   9.2e-07       1     142 [.      47     183 ..      47     189 .. 0.82
   2 ?   -1.0   0.0      0.53   1.2e+03      82     111 ..     260     299 ..     214     336 .. 0.53

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 4.1e-10
   SWI2_SNF2   1 qQyravekavervkegdrkgGviWHtqGSGKsltmvflakklle.e.elknpkvvvvtDRkdLdkQlsktfakageekpkqaesrkeLkellekeseki 97 
                 +Q+ +++++++++++g+++ G+    +GSGK++  + l  k+++ + + +  + +++  R++L +Q +++ + a  +k+ ++    e+ +l ++ +++i
  CCE28787.1  47 YQLECIQSVLSSLEQGQKRVGIS-LATGSGKTVIFTQLIDKIRArReDGRGDRTLILAHRRELVEQAARHCRLAYPDKTIEI----EMGSLHATGAADI 140
                 69999***********9999975.678****************953356999***************999986655553333....33344455699** PP

   SWI2_SNF2  98 ifttiqKfeeeekeklevlsereniivlvDEaHRsqygelakklr 142
                  ++ +q +++++  +l+++s ++  ++lvDEaH    +++ k+l+
  CCE28787.1 141 TIASVQSITSKD--RLHKFSPSDFKLILVDEAHHIVASGYLKTLK 183
                 ********8754..59999999999********988887777776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.53
   SWI2_SNF2  82 srkeLkell.eke.sekiifttiqKfeeeek........e 111
                 ++ eL + + ++e ++ ++ t i+K +++++        +
  CCE28787.1 260 QTGELSKAVnTDEvNDIMVKTWIHKAHDRKStlvfcvdlA 299
                 3346666663233233344466777764433344444441 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.8e-06     0.013      10     103 ..      72     176 ..      68     192 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.8e-06
     DUF2075  10 aGtGKtvvllnllael...eddeeertavylsvNhplvlvlrealakke......ekkkkkeafeklssfinnlsef..kkaeekkeepkedvvivDEA 97 
                 +G+GKtv+  +l+ ++   ++d ++ ++ +l   ++lv+   ++ +          ++   +a    +  i ++++   k++ +k +  ++++++vDEA
  CCE28787.1  72 TGSGKTVIFTQLIDKIrarREDGRGDRTLILAHRRELVEQAARHCRLAYpdktieIEMGSLHATGAADITIASVQSItsKDRLHKFSPSDFKLILVDEA 170
                 7***************97766667777777777777777665554444444665433333344445555666666558799999999************ PP

     DUF2075  98 hrlltk 103
                 h +  +
  CCE28787.1 171 HHIVAS 176
                 *98774 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   7.3e-06     0.016      12      49 ..      60     102 ..      50     115 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.3e-06
  TrwB_AAD_bind  12 eretqhilivGttGsGKtqalekllrairarg.....draivl 49 
                    e+ ++ + i  +tGsGKt+ +++l+++irar      dr ++l
     CCE28787.1  60 EQGQKRVGISLATGSGKTVIFTQLIDKIRARRedgrgDRTLIL 102
                    556777888889******************9766666777776 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.9e-06     0.018      54     154 ..     284     385 ..     261     400 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.9e-06
  ERCC3_RAD25_C  54 kyhekrgDkiivfsDnvfaLkeyakklkk.....pyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqeaqr 144
                    k h+++    +vf+ ++  + ++++++++     ++++Get++ +r++il++fk+  ++ +++   v  +  D+P+  +++ +   + sr    q 
     CCE28787.1 284 KAHDRK--STLVFCVDLAHVAALTNRFRQygydaRFVTGETHRLDRSEILDAFKRG-EFPVLVNCGVFTEGTDIPNIDCIV-LGRPTRSRNLLVQM 375
                    333333..257888766666665555543222228******************987.799999999999**********87.67788899999999 PP

  ERCC3_RAD25_C 145 lGriLrakkk 154
                    +Gr +r   +
     CCE28787.1 376 IGRGMRLHPG 385
                    9998886655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.2e-05     0.028       5     107 ..      45     144 ..      41     198 .. 0.77
   2 ?   -2.5   0.0       2.5   5.7e+03     131     147 ..     286     302 ..     248     337 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.2e-05
      AAA_16   5 ReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawreklee 103
                 R+ +le ++s+l+++ +g+   v +s + G+GK+ + ++l + +++++     g+ d+         l+ a  r+el++q +++   + l++ ++++e 
  CCE28787.1  45 RDYQLECIQSVLSSLEQGQ-KRVGISLATGSGKTVIFTQLIDKIRARR---EDGRGDRT--------LILAH-RRELVEQAARH---CRLAYPDKTIEI 127
                 99****************9.67889*****************999996...88999999........99999.77****99999...888888888888 PP

      AAA_16 104 ala.............a 107
                 +++             +
  CCE28787.1 128 EMGslhatgaaditiaS 144
                 88844443333333332 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.5
      AAA_16 131 srderplvlvlDdlqwa 147
                 + ++++lv+++D ++ a
  CCE28787.1 286 HDRKSTLVFCVDLAHVA 302
                 44455566666655543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4942.56
//
Query:       CCE28788.1  [L=575]
Description: uncharacterized protein CPUR_02477 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4001.36
//
Query:       CCE28789.1  [L=416]
Description: uncharacterized protein CPUR_02478 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-26   92.7   0.2    1.6e-26   92.7   0.2    2.5  2  Eaf7            Chromatin modification-related protein EAF7
  ------ inclusion threshold ------
       0.27   10.0   5.2       0.37    9.5   5.2    1.3  1  SAPS            SIT4 phosphatase-associated protein
        0.3   11.2  23.1        6.7    6.7   0.1    2.3  2  YL1             YL1 nuclear protein
        2.4    6.4  16.8      0.041   12.2   9.5    1.7  2  CDC45           CDC45-like protein
        3.2    6.6   5.4       0.47    9.4   0.8    1.8  2  DUF913          Domain of Unknown Function (DUF913)
          4    7.3  16.8        6.7    6.6  16.8    1.3  1  TFIIA           Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> Eaf7  Chromatin modification-related protein EAF7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.2   5.5e-30   1.6e-26       3     104 ..      57     138 ..      55     140 .. 0.88
   2 ?   -1.8   3.1       1.4   4.1e+03      81      87 ..     267     273 ..     239     316 .. 0.60

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 5.5e-30
        Eaf7   3 irLfkliiefkPaGihKhFrmlaiverlnkpdkytllqkekpksgkhtsiediwekLktlYdLkaldelenekeeeeeeeekekeekakeleekkdFeL 101
                 ++Lfk +i++kPaG+hKhFrm+ai+e+l++       ++++p++ kht+i++iw+kL+t+YdL+ +de+e + +              +  +++ +F+L
  CCE28789.1  57 ASLFKGVIRWKPAGMHKHFRMIAISEHLRN-------HGFDPDMYKHTRIPHIWKKLRTYYDLDIIDERELYDN-------------DELDQKYVEFSL 135
                 68****************************.......**********************************922.............123456777777 PP

        Eaf7 102 Ped 104
                 P +
  CCE28789.1 136 PRS 138
                 766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
        Eaf7  81 eeekeke 87 
                 e ++++e
  CCE28789.1 267 EVDDTDE 273
                 2111111 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.2   0.00012      0.37     263     342 ..     189     314 ..     116     343 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00012
        SAPS 263 seeealedvs.........................................deaskeesaesedltdkdedvsleesksakdenkesdesesd.....t 315
                 +++e+ ed++                                         ++a+k++++ ++d++d++e+ +++e+++ +d+ +e+de++ d     +
  CCE28789.1 189 DDSEESEDKTptpvakptrggrggrggrggrggrggrggrgrrgaasqgqlTRADKSDKPGKNDKADTTEEEDNDEEAEVDDTDEEEDEEDGDededgS 287
                 334444444477777777777777777777777777777777777777777444444444444444444444444444444433333333333000003 PP

        SAPS 316 aeesseededdasseesalaeeteekl 342
                  +++ +e++++++  ++a  ++++ + 
  CCE28789.1 288 GSDERDEESPEEEGGNPASRSTRAAAR 314
                 344444444455555555555444444 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0023       6.7     137     166 ..     168     197 ..     116     209 .. 0.76
   2 ?    6.5  18.6    0.0026       7.8      25      90 ..     254     317 ..     225     331 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0023
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
         YL1 137 ltpkrRkssRastvenkeqleerlker.eer 166
                  +p  Rk +R+stv +++  e+  +e+ e +
  CCE28789.1 168 ASP-TRKRKRSSTVSKTRVAEDDDSEEsEDK 197
                 344.5*********99999998888883443 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0026
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  25 ellFaEeedDeefeseeeeeeeensDsdfdsdeedeesdeeedeeegekelerqerkkrkkekkkr 90 
                  ++ +Ee++Dee e ++ +eee  +++d d+de+   sde ++e+ +e+  + + r+ r++++kk+
  CCE28789.1 254 ADTTEEEDNDEEAEVDDTDEEE--DEEDGDEDEDGSGSDERDEESPEEEGGNPASRSTRAAARKKA 317
                 3356899999999999888887..677777777655577777777777777788888886665554 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.7      0.29   8.8e+02     170     188 ..     173     194 ..     116     207 .. 0.59
   2 ?   12.2   9.5   1.4e-05     0.041     137     195 ..     253     318 ..     232     414 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.29
       CDC45 170 krksksdeeee...sdddders 188
                 krk++s  +++   +ddd+e+s
  CCE28789.1 173 KRKRSSTVSKTrvaEDDDSEES 194
                 1111111111111122222222 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.4e-05
       CDC45 137 e....eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee...sddddersrkrrrse 195
                 +    eee++d++ e ++ +eeedeed +ede+ s+++++++++ eee    +++++r++ r++  
  CCE28789.1 253 KadttEEEDNDEEAEVDDTDEEEDEEDGDEDEDGSGSDERDEESPEEEggnPASRSTRAAARKKAA 318
                 112223333333333344444444444444444433333333333333344334444444444443 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.3      0.25   7.4e+02     279     300 ..     175     197 ..     137     214 .. 0.45
   2 ?    9.4   0.8   0.00016      0.47     267     356 ..     246     369 ..     222     378 .. 0.44

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.25
      DUF913 279 sssetkeeek.......ssededvemeda 300
                 ++s      +       +++d+++e ed+
  CCE28789.1 175 KRS------StvsktrvAEDDDSEESEDK 197
                 111......01111122112222222222 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00016
      DUF913 267 sasskseasssssssetkeeek...ssededvemeda..............eeetesesdeseeseeekekns.......................... 322
                  +  k+++++++++++++ee++   ++e+ed+e+ d+              +              ee+ +n+                          
  CCE28789.1 246 DKPGKNDKADTTEEEDNDEEAEvddTDEEEDEEDGDEdedgsgsderdeesP--------------EEEGGNPasrstraaarkkaalvveegrpgdlh 330
                 3333333333333333343333544333333333333333344333322221..............222222211112222333344445555555555 PP

      DUF913 323 ....lldyilnvakFLeallsnnslc.reFvekgGiell 356
                     + + +lnv++  +++ + ++l  ++ +++gG el+
  CCE28789.1 331 hldmAGEQVLNVFHKTTSITKDTALFdKDSIQRGGGELV 369
                 555555555555555555555555444555555555555 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  16.8    0.0022       6.7     257     369 ..     140     300 ..     114     305 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0022
       TFIIA 257 legelsaeeeagaqkeelsreeidri.reealkakelekeskkkkr.aeessla............................................. 308
                 ++g +++++ a+a++  +s  e+d   ++ + ++k +++++ +k+r ae+++++                                             
  CCE28789.1 140 FHGAMMSRAVADASEVPSSPPELDLSgEA-SPTRKRKRSSTVSKTRvAEDDDSEesedktptpvakptrggrggrggrggrggrggrggrgrrgaasqg 237
                 55666666666666666666666655333.222222222222223322222222345566778888888899999999999999999999999999888 PP

       TFIIA 309 .....dlseilqlDGagddsdeeeeeeesdedsdsessddedeqveEDplNSdDDvddeddddlfd 369
                      d+s+ +    ++d+++ee+++ee++ d+++e++d+ed++++ED   S+ D+ de+ ++ ++
  CCE28789.1 238 qltraDKSDKPGKNDKADTTEEEDNDEEAEVDDTDEEEDEEDGDEDED--GSGSDERDEESPE-EE 300
                 776666666666666677777778788888887767777788866666..6998888888888.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1159  (0.0646439); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 2694.59
//
Query:       CCE28790.1  [L=980]
Description: uncharacterized protein CPUR_02479 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-69  235.1   0.0    1.9e-69  234.5   0.0    1.3  1  GCP_C_terminal  Gamma tubulin complex component C-terminal
      2e-24   86.8   0.1    3.4e-24   86.0   0.1    1.5  1  GCP_N_terminal  Gamma tubulin complex component N-terminal


Domain annotation for each model (and alignments):
>> GCP_C_terminal  Gamma tubulin complex component C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.5   0.0   2.1e-73   1.9e-69       1     309 []     595     977 ..     595     977 .. 0.86

  Alignments for each domain:
  == domain 1  score: 234.5 bits;  conditional E-value: 2.1e-73
  GCP_C_terminal   1 LlehLkllkrylLlgqgdFisrLldalfdel..........................wkpasselrlaLtslLeeairssnaqq........... 58 
                     L++hL+l ++++Ll +g F+srL++alfd++                          w+passelrlaL+++L+ea+++s   +           
      CCE28790.1 595 LQSHLNLHRDFQLLRNGLFCSRLSHALFDPDletaerrtgvamqggvmglrlggrdtWPPASSELRLALMGVLSEAFEASPG-Ewsnlskkadsd 688
                     889***************************************************************************8752.346677778875 PP

  GCP_C_terminal  59 sdelkddlsfal.dlpevleeldakl.dpdslegldfltLeYkvpwplslvitpealekYqriFrfLlrvkrvefalsslwkrrkatgarsvllk 151
                        l++dlsfa+ dl+e  ee+d k+ dpd+le+ldfl+L+Y+ p+ l  +itp  l++Y+riF++Llr +r+ +++++l+  r+++++++++++
      CCE28790.1 689 GPVLPGDLSFAVrDLSE--EEID-KCmDPDTLEALDFLRLSYTTPPELASIITPLHLMHYDRIFKLLLRTLRMLYVVNQLY--RDTNSRSNTWFE 778
                     4456*************..****.555***************************************************988..444444445544 PP

  GCP_C_terminal 152 ra..rllrqemlhfvsqlqyYvldeviessWreleekl.kke................atdldelieaHeafLdsilkkclLrsk.kkllkllee 226
                     +   ++++ e +hfvs++ +Y+ld++i  +W+++ ++l + +                + ++ e++++H+ +L++i+++++Lr++ +++lkllee
      CCE28790.1 779 DNasYRFVRESQHFVSSIVSYFLDSGIALPWQAFDRTLdSLRsrlngrdprpgdkaaaTFSPTEVRDMHSLVLERIMFSLFLRKRqQPVLKLLEE 873
                     4456**********************************55457777777777766665228************************77******** PP

  GCP_C_terminal 227 ilelileFakvldgly.lsvseltaeeaeeeeleekleerleelekeFrkkvslllkvlralkeqe..........................ede 294
                     i+ +il++ak+ + l   +v++        ++ +++ + +  e ++e rkk++++++v+r+l+e+                           +d+
      CCE28790.1 874 IFAMILAYAKRARLLAlGKVDQ---G---GAASADEHKLKTAESYAELRKKLQVFITVCRGLSEKArvsrasgkriksagagileeygvgvsDDS 962
                     **********987766333333...2...223333466788999******************666678888888888887777777777776667 PP

  GCP_C_terminal 295 dlrqLllrLdfnefY 309
                      ++qLl++Ld  ++Y
      CCE28790.1 963 LVAQLLTKLDLGGYY 977
                     **************9 PP

>> GCP_N_terminal  Gamma tubulin complex component N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.1   3.8e-28   3.4e-24       3     268 ..     173     488 ..     171     592 .. 0.68

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 3.8e-28
  GCP_N_terminal   3 dllylLqGisgklirfdekdd...ervvkdvrlpgllppslrslverllelgtlyrrlrkfveevsrsesglvlqalaaaldeelteyyrliaql 94 
                     +ll l +G+ + ++  +++dd    +v  ++r++g++ + l+++ +  +++g+ y +l ++ ++  +s+s++   ala+++++ l++  ++ +++
      CCE28790.1 173 SLLSLSLGRGSVFFA-KSSDDgkfASVLSEFRVSGYTRQVLHGVEQLAMQCGSTYLQLADYSKSLYTSSSSRCAVALASSINQILRAV-EFHVTV 265
                     577777799999996.44444588889999******8888888888899*************99888888888899999999888875.666677 PP

  GCP_N_terminal  95 EsqlledsesiltLlrlevwlqetllllrvLanlveevekanlkggallsllhe.aaqhgdp..kvrkllsellervsrpflemlekWil.eGel 185
                     + ++ +      +Ll l++ ++e    lr L +l+ +v  +++ +  +l+l+++ a++h ++  +vr+ l e+l+rvs+p+ e +e W++ + e+
      CCE28790.1 266 DGRFPK------SLLELQSIIKEASVVLRPLRDLAARVP-SGCSDEDVLTLVFQeASSHESNeaHVRNTLCEILRRVSVPWIESVEEWLGtRHET 353
                     777765......788888899999999999999999999.666799********7555544457**************************88888 PP

  GCP_N_terminal 186 sDpy.......nEfFveenesvakeklkeddseklweekYtlrkemlPsflseelaekIletGkslnflres.....................cg 252
                       p+       n +Fv+ ++++++    +d++ ++ + +++l+ +++Psfl+ ++a+  +etG+ l+f+r+                      ++
      CCE28790.1 354 GLPFskssvgeNKTFVKVDTEIST----DDFGRQVQDVDFRLDVDKIPSFLPIDVAQSMFETGRNLRFIRAHhpdhplsrpgvisasmppkaeWQ 444
                     677655556667799999998864....4589999999**********************************88877777777777755444322 PP

  GCP_N_terminal 253 dsew.....iektes....eekel.......................e 268
                       +w     +e   +    ++k++                       +
      CCE28790.1 445 -FDWdavrrLE---KrveqYRKNMlltlqqsrlddsfqpsvsssfnsQ 488
                     .1336543322...1223433333333333333444444444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (980 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 6531.10
//
Query:       CCE28791.1  [L=465]
Description: uncharacterized protein CPUR_02480 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-30  105.2   0.2    1.9e-30  104.5   0.2    1.3  1  DASH_Ask1  DASH complex subunit Ask1


Domain annotation for each model (and alignments):
>> DASH_Ask1  DASH complex subunit Ask1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.2   1.1e-34   1.9e-30       1      64 []      17      80 ..      17      80 .. 0.99

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 1.1e-34
   DASH_Ask1  1 leqldqeitltLqeIDanlsrcfriitkkilPavkrYgeasekiwesakfwksffeqsAnveLs 64
                le+l+q+itltLqeID+n+s+++ri+t++i+P+v++Yge+s+ +we++kfwk+ffe+sAnv+Ls
  CCE28791.1 17 LEKLEQSITLTLQEIDHNFSKAHRIVTTSIIPVVDQYGEHSRSVWEASKFWKQFFEASANVSLS 80
                8*************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3532.37
//
Query:       CCE28792.1  [L=120]
Description: uncharacterized protein CPUR_02481 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   14.2   0.1       0.12   12.9   0.0    1.7  2  TAF8_C    Transcription factor TFIID complex subunit 8 C-term


Domain annotation for each model (and alignments):
>> TAF8_C  Transcription factor TFIID complex subunit 8 C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         1   1.8e+04      41      46 ..      39      44 ..      37      45 .. 0.75
   2 ?   12.9   0.0   6.7e-06      0.12      10      42 ..      49      81 ..      47      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1
      TAF8_C 41 laekaL 46
                +a++aL
  CCE28792.1 39 HAQQAL 44
                789998 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.7e-06
      TAF8_C 10 PppHTYkrTpvyneretdpkkirekaaeqsrla 42
                Pp+HT+ r++  ++  ++++  r+ aae +r +
  CCE28792.1 49 PPRHTFERSSSSRNIFSSMRDSRRCAAESRRAS 81
                ****************************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 983.27
//
Query:       CCE28793.1  [L=1167]
Description: related to GTP-binding protein Bms1p, required for distinct steps of 40S ribosome biogenesis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-93  312.5   0.0    2.9e-93  312.5   0.0    2.2  2  RIBIOP_C        40S ribosome biogenesis protein Tsr1 and BMS1
    1.5e-27   95.5   0.0    5.6e-27   93.6   0.0    2.1  1  AARP2CN         AARP2CN (NUC121) domain
    2.8e-05   24.4   0.0    7.6e-05   23.0   0.0    1.7  1  AAA_22          AAA domain
    5.3e-05   23.7   0.2    0.00028   21.3   0.0    2.2  2  AAA_16          AAA ATPase domain
    0.00022   21.4   0.6     0.0007   19.8   0.0    2.2  1  AAA_33          AAA domain
    0.00043   20.8   0.3     0.0025   18.3   0.0    2.4  1  ABC_tran        ABC transporter
    0.00054   19.9   0.0     0.0016   18.4   0.0    1.9  1  NACHT           NACHT domain
    0.00092   19.3   0.0     0.0029   17.7   0.0    1.9  1  MMR_HSR1        50S ribosome-binding GTPase
     0.0012   19.3   0.0     0.0033   17.9   0.0    1.8  1  AAA             ATPase family associated with various cellula
     0.0022   18.3   0.0     0.0066   16.8   0.0    1.8  1  AAA_19          AAA domain
     0.0035   16.9   0.0        0.6    9.6   0.0    2.4  2  GTP_EFTU        Elongation factor Tu GTP binding domain
     0.0067   16.8   0.0      0.068   13.6   0.0    2.3  2  RNA_helicase    RNA helicase
     0.0073   16.0   0.0      0.022   14.5   0.0    1.8  1  AAA_30          AAA domain
     0.0095   15.2   0.0      0.019   14.1   0.0    1.4  1  NB-ARC          NB-ARC domain
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.057   13.2   0.0    1.8  1  PduV-EutP       Ethanolamine utilisation - propanediol utilis
      0.033   14.1   0.0       0.24   11.3   0.0    2.3  2  RsgA_GTPase     RsgA GTPase
      0.038   13.7   0.0      0.093   12.4   0.0    1.6  1  AAA_24          AAA domain
      0.039   13.5   0.0       0.12   12.0   0.0    1.8  1  AAA_25          AAA domain
      0.045   13.3   0.0      0.087   12.4   0.0    1.4  1  cobW            CobW/HypB/UreG, nucleotide-binding domain
      0.055   13.4   0.1       0.11   12.4   0.1    1.5  1  NTPase_1        NTPase
      0.069   13.2   0.4       0.21   11.6   0.0    2.0  1  AAA_14          AAA domain
      0.084   12.8   0.1       0.48   10.3   0.0    2.1  2  Rad17           Rad17 P-loop domain
      0.085   13.1   0.0        0.2   11.9   0.0    1.6  1  Roc             Ras of Complex, Roc, domain of DAPkinase
      0.088   12.7   0.0       0.18   11.7   0.0    1.5  1  Ploopntkinase3  P-loop Nucleotide Kinase3
      0.093   12.6   0.2          2    8.3   0.0    2.5  2  MobB            Molybdopterin guanine dinucleotide synthesis 
       0.11   12.6   0.0       0.29   11.1   0.0    1.7  1  AAA_5           AAA domain (dynein-related subfamily)
       0.11   13.0   0.0       0.11   13.0   0.0    4.4  4  AAA_18          AAA domain
       0.13   11.8   0.0       0.33   10.4   0.0    1.6  1  AAA_7           P-loop containing dynein motor region
       0.16   12.4   0.0       0.16   12.4   0.0    3.5  2  AAA_17          AAA domain
        2.4    8.6   0.0        2.4    8.6   0.0    4.0  2  AAA_23          AAA domain


Domain annotation for each model (and alignments):
>> RIBIOP_C  40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.5   0.0   4.8e-96   2.9e-93       7     292 .]     689     997 ..     684     997 .. 0.90
   2 ?   -1.1   1.8       1.6   9.8e+02       5      49 ..    1104    1147 ..    1100    1161 .. 0.52

  Alignments for each domain:
  == domain 1  score: 312.5 bits;  conditional E-value: 4.8e-96
    RIBIOP_C   7 vearerfakyrglkslrtsew.....dpkenlpeeyari..fefenfketkkrvlkeale............eregveg...Gtyvrleiknvpeelve 83 
                  e++++++++ +lk+ +++e      + k n  +e  +i  f ++++++++k+v++++l+            +r+ veg   G+y ++++++vp e+v+
  CCE28793.1 689 AEREKNAKRKAELKQRFEEEDregflNDKANARREGGDIqdFGEDDWYDAQKAVIQKQLDinkeefetldesQRAAVEGyraGKYAKIVLEGVPAEFVT 787
                 567788888888998888887555555555555554444116668999********77777788899999995555555666***************** PP

    RIBIOP_C  84 eknfdekkplivfgllphEekvsvvnvrikrhreyekpikskdplifsvGfRrfqakPifsqedtknnkhklerylkpght.cvatfygpitfpntpvl 181
                   +f+++ p++v+gl p+E++ ++v+vrikrhr+++k++k++dpli+s+G+Rrfq++Pi+s++d +++++++++y+ p+h+ c+at+y+p+++pnt+++
  CCE28793.1 788 --RFNARMPIVVGGLTPTEDRWGFVQVRIKRHRWHKKILKTNDPLILSLGWRRFQTMPIYSTTD-SRTRNRMLKYT-PEHMhCFATIYAPLIAPNTGFV 882
                 ..89************************************************************.6**********.99999***************** PP

    RIBIOP_C 182 afkel...sskeasfrlvatGsvlevdpsriivkrivLtGhpfkihkktaviryMFfnpedvawFkpveLrTksGrrGhIkeslgt.hGyfkatFddkl 276
                 +f++    +++ ++fr++atG+vl+vd+s++ivk+++LtG+p+ki+k+ta+i++MF +++++a+F++++++T+sG+rG+Ik++l++ +G+f+atF+dk+
  CCE28793.1 883 CFNSFtppAENAGGFRIAATGTVLSVDESTEIVKKLKLTGTPYKIFKNTAFIKDMFSSSLEIAKFEGASIKTVSGIRGQIKRALSKpEGHFRATFEDKI 981
                 ***777777779**************************************************************************9************ PP

    RIBIOP_C 277 kqsDiVlmslYkrvfp 292
                   sDi++++++++++p
  CCE28793.1 982 LVSDIIFLRAWYPIKP 997
                 ************9987 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
    RIBIOP_C    5 edvearerfakyrglkslrtsewdpkenlpeeyarifefenfket 49  
                  +d +a++r++k ++   + +++  ++e+++e  ++  + e ++++
  CCE28793.1 1104 NDAAAKRRAKKAENHAAF-KKKLAENEDKKEAREKRESKEFWRKN 1147
                  444555555555555555.55554556655544444444445443 PP

>> AARP2CN  AARP2CN (NUC121) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   0.0   9.4e-30   5.6e-27       1      86 []     216     303 ..     216     303 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.6 bits;  conditional E-value: 9.4e-30
     AARP2CN   1 Eilnllrfisvqkf.rplswReqrpyiladrveiltdseskeeeskedrtlsveGyvrGspl.sanqlvHipglGDfqiekieklpdP 86 
                 Ei+nl+rf+sv+k  rpl wR+++py ++d+++++t+++++ee++k+dr+++++Gy+rG+++ s++q+vH++glGDf+++++e+lpdP
  CCE28793.1 216 EIHNLSRFVSVMKNpRPLIWRNNHPYTIIDSFRDITHPTKIEEDPKCDRSIVLSGYLRGTNFaSQGQRVHVAGLGDFTVASMEALPDP 303
                 8***********98799*********************************************999**********************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.3e-07   7.6e-05       6      50 ..      67     120 ..      63     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.3e-07
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.........erpevvfvtlpss 50 
                 ++++++G++G+GKTtll+ +++++ +e   +          ++ ++ fv++p++
  CCE28793.1  67 RLVAIVGPPGVGKTTLLKSMVRRYAKETLSDPqgpitvvtsKKQRLTFVECPNQ 120
                 6789********************877777778888888877777779999987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.7e-07   0.00028      15      60 ..      56     109 ..      48     132 .. 0.73
   2 ?   -2.1   0.3       7.5   4.5e+03      53     102 ..    1080    1116 ..    1061    1148 .. 0.51

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.7e-07
      AAA_16  15 alervrsgrp.elvllsGesGvGKsslvrellralekd......g.giflrgkc 60 
                 +++r+ +  p +lv ++G++GvGK++l+++  r++ k+      g + +++ k 
  CCE28793.1  56 LVDRLPDEAPpRLVAIVGPPGVGKTTLLKSMVRRYAKEtlsdpqGpITVVTSKK 109
                 56777777888*****************88888887775776664233344444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 7.5
      AAA_16   53 giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekle 102 
                  +++l  + d+              +++ l++qll+  ++a++ + ++k e
  CCE28793.1 1080 AVVLPRNSDET-------------KARALMQQLLTVRNDAAAKRRAKKAE 1116
                  55555555555.............33466666666633322222222222 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.2e-06    0.0007       1      98 [.      68     161 ..      68     190 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.2e-06
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrn.vildatnlsrrerarflklarrlgvp 98 
                 lv +vG+pG+GK+tl+++++++ + ++ls ++   +++ +++q++t       ++ ++l++++++a  a +  +++d  + ++ e ++fl+++   g+p
  CCE28793.1  68 LVAIVGPPGVGKTTLLKSMVRRYAKETLSDPQGPITVVTSKKQRLTF-V----ECPNQLEAMVDIAKIADIVlLMIDGNFGFEMETMEFLNILAATGMP 161
                 7899*************************999777887766666653.2....3555665555544444433255577777777777777777777766 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.2e-06    0.0025      12      37 ..      67      92 ..      64     124 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.2e-06
                SEEEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkllagllkp 37
                ++vaivG+ G GK+tLlk + + + +
  CCE28793.1 67 RLVAIVGPPGVGKTTLLKSMVRRYAK 92
                579******************99976 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.7e-06    0.0016       1      31 [.      67      97 ..      67     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.7e-06
                SCEEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT  1 rlvilqGeaGsGKTtLlqklalawaegklpq 31
                rlv++ G++G+GKTtLl+++++  a+++l  
  CCE28793.1 67 RLVAIVGPPGVGKTTLLKSMVRRYAKETLSD 97
                789**********************999876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.9e-06    0.0029       2      55 ..      69     119 ..      68     162 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.9e-06
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGG CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpG 55 
                 vaivG p vGK+tL+++++++ + ++ + p+  +++++     k++++++v +p 
  CCE28793.1  69 VAIVGPPGVGKTTLLKSMVRRyAKETLSDPQGPITVVTS----KKQRLTFVECPN 119
                 89*****************98533443333322222222....234555555555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.5e-06    0.0033       2      65 ..      70     139 ..      69     140 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.5e-06
                 EEESSTTSSHHHHHHHHHHHH........T..HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEE CS
         AAA   2 llyGppGtGKTllakavakel........g..vefleisgsellskyvgesekkirelfkeakekakpsilfiD 65 
                  ++GppG+GKT+l k++++          +  +++++ +  +l+   + e +++++++++ ak     + l+iD
  CCE28793.1  70 AIVGPPGVGKTTLLKSMVRRYaketlsdpQgpITVVTSKKQRLT---FVECPNQLEAMVDIAKIAD-IVLLMID 139
                 589**************999633333333134556666666666...8899999999998887776.6666676 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.1e-05    0.0066       8      49 ..      64     106 ..      60     124 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.1e-05
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvelggvkp.eeillva 49 
                 ++ ++++++++pG GKT++lk +v+ + +++  +p  +i++v+
  CCE28793.1  64 APPRLVAIVGPPGVGKTTLLKSMVRRYAKETLSDPqGPITVVT 106
                 567899*******************998887666624555555 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.053        32       4      27 ..      67      90 ..      65     100 .. 0.85
   2 !    9.6   0.0     0.001       0.6      85     150 ..     122     191 ..      95     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.053
                EEEEEEESTTSSHHHHHHHHHHHT CS
    GTP_EFTU  4 rnigiighvDhGKtTLtdrLlykt 27
                r ++i+g    GKtTL+ +++ + 
  CCE28793.1 67 RLVAIVGPPGVGKTTLLKSMVRRY 90
                6799**************998765 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.001
                 HHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTE..EEEEEESCGST..HHHHHHHHHHHHHHH CS
    GTP_EFTU  85 kevirglrvlDgavlvvdaveGvepqteevlrlalkegvp..iivfiNKmDrl..kaelkeiveevkqkl 150
                 + +   ++++D+++l++d + G e+ t e l+++ + g+p  ++ +++ +D     + lk  ++ +k++l
  CCE28793.1 122 EAMVDIAKIADIVLLMIDGNFGFEMETMEFLNILAATGMPgnVFGILTHLDLFrkPQALKDAKKRLKRRL 191
                 567777899*******************************988888999999876667777777777776 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   0.00011     0.068       2      36 ..      70     104 ..      69     126 .. 0.79
   2 ?    0.1   0.1       1.7     1e+03      23      73 ..    1070    1122 ..    1061    1139 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00011
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvys 36 
                    ++Gp+g+GK+tl k+++++ +k+  ++ ++ + +
    CCE28793.1  70 AIVGPPGVGKTTLLKSMVRRYAKETLSDPQGPITV 104
                   689*******************9987766666655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.7
  RNA_helicase   23 lkklklkkkdsvys.rnpeddfwdgYtgqevvvidDfgqvkdee.npsdlael 73  
                    +k+  + +k  v+  rn++++      +q  +v  D ++++  +  ++  a++
    CCE28793.1 1070 QKHETYLQKRAVVLpRNSDETKARALMQQLLTVRNDAAAKRRAKkAENHAAFK 1122
                    3444455666666679********************99999776566555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.7e-05     0.022      19      46 ..      67      94 ..      63     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.7e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaag 46
                r+++++Gp+G GKtt+lk++++ ++++ 
  CCE28793.1 67 RLVAIVGPPGVGKTTLLKSMVRRYAKET 94
                6899***************988887764 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   3.2e-05     0.019      12      44 ..      60      90 ..      55     113 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.2e-05
                HHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC 12 LlekdelqslvvalvGmgGvGKttlakqilnks 44
                L  +  +   +va+vG +GvGKttl+k++++ +
  CCE28793.1 60 LPDEAPPR--LVAIVGPPGVGKTTLLKSMVRRY 90
                55444455..89***************999875 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.5e-05     0.057       4     117 ..      69     189 ..      67     197 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.5e-05
   PduV-EutP   4 illiGkvgsGKttLtqalkg....eelkYkktqaiefsdeviDtPGeylenrklysalivtsaeadvialvqdateeesvfppgfasv.....fnkevi 93 
                 + ++G+ g+GKttL +++      e+l+  +   + ++++       ++e  +  +a++ ++  ad++ l+ d +   ++ + +f ++     +  +v 
  CCE28793.1  69 VAIVGPPGVGKTTLLKSMVRryakETLSDPQGPITVVTSKK--QRLTFVECPNQLEAMVDIAKIADIVLLMIDGNFGFEMETMEFLNIlaatgMPGNVF 165
                 56899999999999988866333344544443333333322..23469************************9876666666666555111115679** PP

   PduV-EutP  94 GiitkidlaedeenieaveelLks 117
                 Gi+t++dl ++ ++++ ++++Lk 
  CCE28793.1 166 GILTHLDLFRKPQALKDAKKRLKR 189
                 ********************9985 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0004      0.24      93     124 ..      60      91 ..      43     100 .. 0.83
   2 ?   -1.0   0.0       2.4   1.4e+03     125     148 ..     399     422 ..     393     427 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0004
                  HHHHCTTSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  93 lkellkdktsvlvGqSGvGKStLinallpele 124
                  l ++   +++++vG+ GvGK+tL+++++ +  
   CCE28793.1  60 LPDEAPPRLVAIVGPPGVGKTTLLKSMVRRYA 91 
                  5566667899***************9987654 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.4
                  ---S--------------SEEEEE CS
  RsgA_GTPase 125 lktgevseklgrGkhTTtavelle 148
                  +k++ v e+ ++G+ T +++++ e
   CCE28793.1 399 QKINGVAEEEDTGRKTQRRARVAE 422
                  78999*************998876 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00016     0.093       5      22 ..      69      86 ..      66     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00016
      AAA_24  5 iliyGpsgiGKTtlakel 22
                ++i+Gp+g+GKTtl+k++
  CCE28793.1 69 VAIVGPPGVGKTTLLKSM 86
                79**************99 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00019      0.12      35      60 ..      68      93 ..      49     111 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
      AAA_25 35 lallaGapgtGKttlaldlalavatG 60
                l++++G+pg+GKttl+ +++  +a+ 
  CCE28793.1 68 LVAIVGPPGVGKTTLLKSMVRRYAKE 93
                7899****************999953 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00015     0.087       3      27 ..      69      93 ..      67      96 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
                EEEEESTTCCHHHHHHHHHCT--SS CS
        cobW  3 tvltGflGsGKTtLlnhllenragl 27
                + ++G++G GKTtLl++++++ a++
  CCE28793.1 69 VAIVGPPGVGKTTLLKSMVRRYAKE 93
                679***************9776655 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00019      0.11       2      26 ..      69      93 ..      68     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00019
                EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkss 26
                v+i GppGvGKtTl+k +++  +++
  CCE28793.1 69 VAIVGPPGVGKTTLLKSMVRRYAKE 93
                6899***********9988876555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00035      0.21       3      28 ..      67      96 ..      66     139 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00035
      AAA_14  3 kilvitGaRrvGKTtllkqlikell....v 28
                ++++i+G+  vGKTtllk +++++      
  CCE28793.1 67 RLVAIVGPPGVGKTTLLKSMVRRYAketlS 96
                5789****************9888744441 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00081      0.48      41      70 ..      62      91 ..      27     122 .. 0.75
   2 ?   -0.7   0.1       1.9   1.1e+03       5      37 ..     731     763 ..     727     778 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00081
       Rad17 41 esrkkriLLisGPsGCgkstvvkvLskelg 70
                ++++ r++ i GP+G gk+t +k + + ++
  CCE28793.1 62 DEAPPRLVAIVGPPGVGKTTLLKSMVRRYA 91
                457889*****************9877665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.9
       Rad17   5 enelWfekykPekaeelavhkkkieevkewlka 37 
                 + + W++  k   +++l + k+  e ++e  +a
  CCE28793.1 731 GEDDWYDAQKAVIQKQLDINKEEFETLDESQRA 763
                 6789******************99998877665 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00034       0.2       2      27 ..      69      94 ..      68     127 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00034
                EEEESSTTSSHHHHHHCHCT-CCC-E CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfsek 27
                v +vG  gvGKt+llk++v++  +e+
  CCE28793.1 69 VAIVGPPGVGKTTLLKSMVRRYAKET 94
                679**********9988776655444 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0003      0.18       3      35 ..      66      98 ..      64     113 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0003
  Ploopntkinase3  3 arliylvGqPGaGkstlmaeltkgfdrskveqe 35
                    +rl+ +vG PG Gk+tl+ ++ + + ++++++ 
      CCE28793.1 66 PRLVAIVGPPGVGKTTLLKSMVRRYAKETLSDP 98
                    79***********************99998744 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0034         2       2      26 ..      69      93 ..      68      96 .. 0.87
   2 ?    1.3   0.0      0.51     3e+02      83     109 ..     752     778 ..     733     785 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0034
        MobB  2 lgivgksgsGKTtLleklipelkar 26
                ++ivg  g GKTtLl+ +++  +++
  CCE28793.1 69 VAIVGPPGVGKTTLLKSMVRRYAKE 93
                789***************9987776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.51
        MobB  83 ellarlsevDlvlvEGfkkealpkiev 109
                 e +++l+e     vEG+++ +++ki++
  CCE28793.1 752 EEFETLDESQRAAVEGYRAGKYAKIVL 778
                 4556666666778************86 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00048      0.29       3      26 ..      70      93 ..      69     105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00048
                EEE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5  3 lLvGppGtgKselaerlaaalnre 26
                 +vGppG+gK++l +++ +++ +e
  CCE28793.1 70 AIVGPPGVGKTTLLKSMVRRYAKE 93
                589*************99988554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00019      0.11       1      21 [.      69      89 ..      69     126 .. 0.87
   2 ?   -0.1   0.9       2.1   1.2e+03      85     125 ..     544     581 ..     490     637 .. 0.70
   3 ?    5.3   0.1     0.044        27      32      91 ..     720     790 ..     686     798 .. 0.79
   4 ?   -2.2   0.4       9.5   5.7e+03      98     119 ..    1099    1120 ..    1061    1142 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00019
      AAA_18  1 IlltGtpGvGKttlakeLskr 21
                +++ G+pGvGKttl k   +r
  CCE28793.1 69 VAIVGPPGVGKTTLLKSMVRR 89
                689***********9988766 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 2.1
      AAA_18  85 eleseaakdikkvvLtaspeelleRlekRgyeeakikenee 125
                  +   ++ ++  + + + p+e l+R +  ++e+++  en e
  CCE28793.1 544 TFHTGDLARYI-YDVSLTPQEVLKRWRGEEEESPE--ENIE 581
                 44444444444.66777788888888888888777..4444 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.044
      AAA_18  32 akenglllevdpe..aldeskrldedkldklldaleenss.........aleegknlvidghlaeleseaa 91 
                 a+ +g  + ++ e  ++d +k + +++ld + +++e  ++         + ++   +v++g++ae++   +
  CCE28793.1 720 ARREGGDIQDFGEddWYDAQKAVIQKQLDINKEEFETLDEsqraavegyRAGKYAKIVLEGVPAEFVTRFN 790
                 45555555555557788999999999999999999999999999999999999999********9987655 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 9.5
      AAA_18   98 vLtaspeelleRlekRgyeeak 119 
                   Lt++++  ++R +k  ++ a 
  CCE28793.1 1099 LLTVRNDAAAKRRAKKAENHAA 1120
                  5566665555555555544332 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00055      0.33      36      75 ..      69     108 ..      64     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00055
       AAA_7  36 vllvGptGtGKtviikdllkkldkekylsltinfsaqtsa 75 
                 v +vGp G+GKt+++k++++++ ke+++  +  ++  ts 
  CCE28793.1  69 VAIVGPPGVGKTTLLKSMVRRYAKETLSDPQGPITVVTSK 108
                 789******************9999887666555555555 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00026      0.16       1      21 [.      72      92 ..      72      97 .. 0.87
   2 ?   -1.1   0.2         4   2.4e+03      50     101 ..     740     790 ..     682     797 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00026
                EE-TTSSHHHHHHHHHHHHTE CS
      AAA_17  1 lGgPGsGKgtqceklvekygf 21
                +G+PG+GK+t+++ +v++y  
  CCE28793.1 72 VGPPGVGKTTLLKSMVRRYAK 92
                7****************9965 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 4
                 HHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHHHHH. CS
      AAA_17  50 pleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglpkevleelk 101
                 + +++k+l+ + +e+ +  ++++ + v+g+   k  +  l+g+p+e+++ ++
  CCE28793.1 740 KAVIQKQLD-INKEEFETLDESQRAAVEGYRAGKYAKIVLEGVPAEFVTRFN 790
                 333333332.223344444567788888888888888888888888887766 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0     0.004       2.4      20      37 ..      67      84 ..      52      87 .. 0.90
   2 ?    0.9   3.0       0.9   5.4e+02     142     179 ..    1100    1142 ..    1001    1153 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.004
      AAA_23 20 gltlItGpNGaGKTTild 37
                 l++I+Gp G GKTT+l 
  CCE28793.1 67 RLVAIVGPPGVGKTTLLK 84
                689*************96 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.9
      AAA_23  142 r.....feefelkdkkerleelekeleeledekkllekleqek 179 
                        ++ +++++k e  ++++k+l e+ed+k+  ek+e ++
  CCE28793.1 1100 LtvrndAAAKRRAKKAENHAAFKKKLAENEDKKEAREKRESKE 1142
                  0222222233445555566666666666666666666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1354  (0.0755201); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        55  (0.00306766); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 1.21u 0.31s 00:00:01.52 Elapsed: 00:00:00.46
# Mc/sec: 7635.77
//
Query:       CCE28794.1  [L=399]
Description: related to cell wall protein cwl1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-32  112.9   3.5    1.9e-32  112.4   3.5    1.2  1  Reticulon  Reticulon


Domain annotation for each model (and alignments):
>> Reticulon  Reticulon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   3.5     1e-36   1.9e-32       2     157 .]      91     249 ..      90     249 .. 0.95

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 1e-36
   Reticulon   2 adlllWrnkkksgivlgglllllllfellgysllslvsklllllllvlflwaeyagllnkskp.......pepelelseesvreladsllellnkalse 93 
                  +ll W+n+++s+i++++++ ++++ ++l  +++++++kl+ ++l v++  ae++g+  ++ +       p+++ ++s+ ++++l+ +++el+n+++ e
  CCE28794.1  91 SELLSWKNPRASAIAYATIVSCIFVARYL--DVIRWAFKLSSMALSVTVG-AELVGKAVLN-HglatqmrPRRYRTISRATLDKLIGDVHELINFFVIE 185
                 689**************************..*******************.9888888884.3467888899*************************** PP

   Reticulon  94 lrrlalgedlklflkvalllyilsilgslfslltllyigvvlaftvPllYekyedeIdalveka 157
                 ++r++++e++ +++ +++++++ + l++l++++ l+++++++af+ Pl+Y ++++ Id+++++a
  CCE28794.1 186 AQRILFVENTITSAAALVAAFLSYHLVKLVPYWGLAILAITVAFFGPLIYATNKELIDHHLKNA 249
                 ************************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2920.50
//
Query:       CCE28795.1  [L=1078]
Description: related to Rab6 GTPase activating protein,GAPCenA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-48  162.7   0.0    2.3e-47  161.5   0.0    1.7  1  RabGAP-TBC  Rab-GTPase-TBC domain
  ------ inclusion threshold ------
        6.9    6.5   8.7        8.1    6.3   2.0    3.0  2  Sec34       Sec34-like family


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.0   2.5e-51   2.3e-47       3     215 .]     333     533 ..     331     533 .. 0.91

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 2.5e-51
  RabGAP-TBC   3 lRgevWklllgyepevkrlkksekkqeksekeksklekseeskelsqIkkDvprtfp..esesfknkqgqnqLeriLkaysiynpevgYcqGmndivap 99 
                 lRg vW+ ++g+++             + e++++     e+s+++  I kD+ r+fp  + +++ +++gq++L r+Lk +s+y+ ++gYcqG+ ++v+p
  CCE28795.1 333 LRGVVWQSMSGSRD------------AVLEEQYERFCG-ESSPYELLIGKDLGRSFPgvDMFRDPDGDGQRMLGRVLKSFSLYDTKIGYCQGLAFLVGP 418
                 89*********943............444444444444.4467789***********8666999999******************************** PP

  RabGAP-TBC 100 lllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwD.lllegekf 197
                 ll ++++ ++aF+++v+L+eky+lrd + ++l+gl+ ++++++ell+ ++p+l+ hl+e+++  + ++++wfl  f+ + pl +++r++D +++eg + 
  CCE28795.1 419 LL-MHMPDKQAFCVLVRLMEKYDLRDCFLPDLSGLHVRIYQFRELLRLHMPALSIHLEEIQV-ETAYVSQWFLSFFAVTCPLPMLFRIYDvIFAEGASE 515
                 **.9999999*************************************************999.6679***********************8899***88 PP

  RabGAP-TBC 198 vllrvalailklleeell 215
                 +l+rval++++++e++ll
  CCE28795.1 516 TLMRVALSLMRKNESRLL 533
                 8*********99998876 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.6     0.012   1.1e+02      11      69 ..     702     732 ..     694     757 .. 0.58
   2 ?    6.3   2.0   0.00091       8.1       4      60 ..     848     904 ..     845     915 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.012
       Sec34  11 ecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLk 69 
                 e + l +q++++l+ L+e++ ++  +++                            +L+
  CCE28795.1 702 EEKYLHSQIEDLLTALSEMQRNHAVIAN----------------------------QLQ 732
                 3445566666666666666666665554............................433 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.00091
       Sec34   4 qLeskeeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleel 60 
                 +L +++e++   +++ +e+ + ++el +++++  e+ ++ h + ++l+++++rle+ 
  CCE28795.1 848 ELANSKEQLSIAVSHSQELSRRIHELDQEVSALREQLRERHGHVKSLHQDKQRLEKQ 904
                 555666666666666666666666666666666666666666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1078 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2271  (0.126666); expected 358.6 (0.02)
Passed bias filter:                      790  (0.0440627); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.23u 0.32s 00:00:01.55 Elapsed: 00:00:00.50
# Mc/sec: 6433.68
//
Query:       CCE28796.1  [L=1221]
Description: uncharacterized protein CPUR_02485 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-07   30.3  29.8      4e-07   29.5  29.8    1.3  1  Ion_trans  Ion transport protein


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5  29.8   2.2e-11     4e-07      22     242 ..     395     602 ..     379     605 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.2e-11
                 CCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH.............HHHHHHHHHHHHGGGGG CS
   Ion_trans  22 etyfpedelek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlse.............esllllsvlrlfrvlrl 106
                 + +  ++++   t le + +++ a f+l+ l+ +  +g+     Y+ ++wni+D+ ++++ ++ + ++              +++ +l++  ++ + r+
  CCE28796.1 395 FLAVLSQRSVHiTGLELVFWFWSAGFMLDELVGFNEQGF---ALYIMSFWNIFDLGILVLLIAYYCMRAygvflldphqwnsMAYDVLAANAILLLPRI 490
                 2222333333358999999********************...9********************995544556666667766677778888888888888 PP

                 GHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHH CS
   Ion_trans 107 lklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdilyatlde 205
                 + ++ + + ++ l+ a+  ++ dl  v++l+l++ + f++++                          + ++ ++  + +f+++   g++   +++  +
  CCE28796.1 491 FSVLDHYQYFSQLLIAFRLMAVDLAAVFVLMLIMCSGFFVFFTSSQ----------------------EASDAGEVAYKIFQILM--GFTPAAWDVWPS 565
                 8888888888888888888888888888888888888888874444......................6678999*******666..99********** PP

                 SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 206 kskvaliyfvifiilgsflllNlliaviadnfqelte 242
                  +++a i++++f+i++ fl++ +li v +++f  + +
  CCE28796.1 566 YNWLARILMMVFLIICHFLVVTILITVLTNSFMAIAS 602
                 ********************************87766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1182  (0.0659267); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 7867.70
//
Query:       CCE28797.1  [L=363]
Description: related to TAP42, component of the Tor signaling pathway [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-96  321.2   0.0    7.3e-96  321.0   0.0    1.0  1  TAP42     TAP42-like family


Domain annotation for each model (and alignments):
>> TAP42  TAP42-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.0   0.0  4.1e-100   7.3e-96       1     319 []      10     353 ..      10     353 .. 0.94

  Alignments for each domain:
  == domain 1  score: 321.0 bits;  conditional E-value: 4.1e-100
                 HHHHHHHHHHHHHH.HHC-S-TTSHHHHHHHHHHHHHHHHHHHHHHHHTTT-SSS-CCCS-TTTGGGGGHHHHHHHHHCT---...GGGHHHHHHHHHH CS
       TAP42   1 lselfekalklyeeslessapsnseeyqekvkkaiaalekaaklvsqlslFSsNEsledistsdLkyLlvpyylaeltqkiqs.sdpeeRlevLkrake 98 
                 l ++f++a+ +++ +le+  p++s++y ++++++++++ ++ ++v++l+lFS+NEs+ed+ ts+L+yL +++ +ael+q+++   +p++R+ vL++a++
  CCE28797.1  10 LDAAFAEAETKRQ-TLEAV-PATSPSYGDDLAALLSQYASLIDQVDSLALFSPNESIEDVPTSSLRYLPLHHTIAELVQRTPFsGNPKQRQLVLRSARD 106
                 6789*********.58876.*************************************************************996789************ PP

                 HHHHHHCCHHHTTS....................S----.......-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH CS
       TAP42  99 yyeeFlkrlesyellseeekklleeleeeekyseseeef.......sdaaarReeKIarfkeeKeleekleelkkrveseeeDeeevRelylaqlklav 190
                 +ye+Fl +++ y l+   ++kll      e+y+++ee+f       sd +arRe+KIa fk eK l+ekl++l++ ++ ee Dee+vRe+yl  +++ +
  CCE28797.1 107 AYERFLALVDGYALVVGPHAKLL------ERYRDDEETFsvvsrhnSDMTARREAKIAAFKTEKGLREKLAMLRQDPRFEERDEEAVREVYLMDVRWRI 199
                 ***********************......555555555666777789999************************************************* PP

                 HHHHHHHHHHHHHHHHHC...--XXXXX...............................XXXXXXX..XXXXXXXXXXXX..XXXXXXXXXXXXXXXXX CS
       TAP42 191 lkafqelesieqEleiLeaapkeeeqee...............................skakkgpllskqgkplrPftilstReelqkkVfgpghslP 258
                 ++af+ l+s++qEle+L++ap e e+e                                  +k+gplls+qg+pl+Pft++++R++++k+Vf+pgh+lP
  CCE28797.1 200 HTAFEGLDSLNQELEMLRMAPVEGEEEDarwrgggavginsrmdgedttlrldqpfqksLLNKGGPLLSRQGRPLQPFTLVESRADIAKGVFRPGHNLP 298
                 **********************998888******************************97789************************************ PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX....XXXXXXXXXXXXXXXXXXX CS
       TAP42 259 tMtvdEyleeevrrGniiegggeasakeeeeeedeeedeekadeeetqkarawDefkddnp 319
                 tM+vdEyleee+rrG+i+egg + +         +e+d e++d +et+kar+wD++kdd++
  CCE28797.1 299 TMSVDEYLEEERRRGGILEGGTDPAPVV-----VDEDDAEAVD-RETYKARQWDDYKDDHR 353
                 *********************8644444.....4677889999.****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2558.74
//
Query:       CCE28798.1  [L=396]
Description: probable acetoacetyl-CoA thiolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-97  324.4   0.3      6e-97  324.1   0.3    1.1  1  Thiolase_N     Thiolase, N-terminal domain
    1.1e-47  160.7   0.4    1.9e-46  156.7   0.2    2.3  2  Thiolase_C     Thiolase, C-terminal domain
    6.9e-06   25.8   4.3    9.3e-05   22.1   1.2    2.8  3  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.1   0.3    1e-100     6e-97       1     259 [.       7     264 ..       7     265 .. 0.98

  Alignments for each domain:
  == domain 1  score: 324.1 bits;  conditional E-value: 1e-100
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsi 99 
                 v+ivsaartpig+f gsl++lsa++L+++a+k+++e+ag++pe+v+ev++Gnvl+ag gq++arq a+ ag+p++++a+tvnkvc+Sglka++l+aq+i
  CCE28798.1   7 VYIVSAARTPIGSFLGSLSSLSATQLGSIAIKGAVERAGIKPEDVEEVFFGNVLSAGLGQAPARQCAIGAGLPNSTIATTVNKVCASGLKAIILGAQNI 105
                 89************************************************************************************************* PP

                 HTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTBE CS
  Thiolase_N 100 aageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdeiv 198
                 + g+++vvvagG+Esmsnap++ + ++r+g+k+gd++++d +++dgl+da+++ehmGl +e +a +y++sR++qde+A++s+qka+aa++ag Fk+ i+
  CCE28798.1 106 MLGTSSVVVAGGTESMSNAPHYLP-TLRNGAKYGDQTLVDGVLKDGLTDAYKKEHMGLQGELCASEYEFSRQAQDEYAIQSYQKAQAATEAGLFKE-II 202
                 ***********************9.99*****************************************************************8876.** PP

                 -EEEEESSSE..EEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 199 Pvkvkgkkgk..ktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmse 259
                 Pv+v g +gk   t+d+d+++++ ++a+kL++++paFk +G++tA na +i+DGaaa++lmse
  CCE28798.1 203 PVEVSGGRGKpaITIDRDDEVKN-LNADKLKAMRPAFKPDGSITAPNAAPINDGAAALVLMSE 264
                 **********8559999999988.*************************************98 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.036   2.2e+02      26      44 ..      35      53 ..      26      69 .. 0.86
   2 !  156.7   0.2   3.2e-50   1.9e-46       1     122 [.     272     393 ..     272     394 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.036
                HHHHHHHHHHT--GGGESE CS
  Thiolase_C 26 yaikkvlkkagltvedidl 44
                 aik ++++ag++ ed++ 
  CCE28798.1 35 IAIKGAVERAGIKPEDVEE 53
                699*************974 PP

  == domain 2  score: 156.7 bits;  conditional E-value: 3.2e-50
                 ---SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHH CS
  Thiolase_C   1 lkplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkk 99 
                 lkp+aki  +  ++ +pe ++++P  ai+k++k+aglt +did++EinEAF+++aLa++k ldld++kvNv+GG++a+GHPlG+sGaRi++tl+s lk+
  CCE28798.1 272 LKPIAKILGWGDAAREPERFTIAPSLAIPKAIKHAGLTDKDIDFYEINEAFSVVALANMKLLDLDASKVNVYGGSVAIGHPLGCSGARIITTLASVLKE 370
                 589************************************************************************************************ PP

                 CTTSEEEEEEEETTTEEEEEEEE CS
  Thiolase_C 100 eggklgvaalCigggqgvalvie 122
                 +g+k+g a +C+ggg ++alvie
  CCE28798.1 371 RGAKIGCAGICNGGGGASALVIE 393
                 *********************98 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.0    0.0079        47      89     126 ..      30      67 ..      28      82 .. 0.83
   2 !   22.1   1.2   1.6e-08   9.3e-05     169     208 ..      85     124 ..      79     134 .. 0.90
   3 ?   -2.0   0.0      0.35   2.1e+03     181     181 ..     326     326 ..     298     395 .. 0.51

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0079
                    HHHHHHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHH CS
  ketoacyl-synt  89 qrllleaawealedagltpeeldgsrvgvfiGvgagdy 126
                    ++l   a + a+e+ag++pe++++  +g+++ +g g+ 
     CCE28798.1  30 TQLGSIAIKGAVERAGIKPEDVEEVFFGNVLSAGLGQA 67 
                    5677788999************9999999999998855 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 1.6e-08
                    EEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SH CS
  ketoacyl-synt 169 vtvdtACsSslvavhaavqslrsgeadvalaGGvellltp 208
                     tv   C+S+l+a+ +  q+++ g ++v++aGG+e + ++
     CCE28798.1  85 TTVNKVCASGLKAIILGAQNIMLGTSSVVVAGGTESMSNA 124
                    678889*****************************99775 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.35
                    H CS
  ketoacyl-synt 181 a 181
                    a
     CCE28798.1 326 A 326
                    2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2806.23
//
Query:       CCE28799.1  [L=438]
Description: related to ethanolaminephosphotransferase (aminoalcoholphosphotransferase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-17   61.7   0.3    8.3e-17   61.7   0.3    3.2  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.3   4.7e-21   8.3e-17       1      66 []      78     153 ..      78     153 .. 0.96
   2 ?  -12.1  15.2         1   1.8e+04      26      42 ..     370     412 ..     158     414 .. 0.70

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 4.7e-21
                      S-HHHHHHHHHHHHHHHHHGGGS-H.............HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf   1 nlPnaiTllrlllsvlailllltyyp...........lvlailllliasltDalDGklARrlnqvstlGkllDslaD 66 
                      ++Pn++Tll+++++++++ ll++y+p           + +a+ l++++++ D++DGk+ARr++++s lG+l+D+++D
       CCE28799.1  78 IAPNMVTLLGFCFILVNVGLLVIYMPdlvgpgpawlyFSFAFGLFMYQTM-DNVDGKQARRTGTSSGLGELFDHGID 153
                      58*********************************99999999999**99.*************777********99 PP

  == domain 2  score: -12.1 bits;  conditional E-value: 1
                      .................HHHHHHH...........HHHHHHTT CS
  CDP-OH_P_transf  26 p...............lvlailll...........liasltDa 42 
                                      +++a +++           +i +++D 
       CCE28799.1 370 LprlgfspisatlelyYLWAYFFFalvvyfhwayiVITAICDY 412
                      0444444444444444333333333333344444347777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3257.13
//
Query:       CCE28800.1  [L=191]
Description: uncharacterized protein CPUR_02489 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1484.56
//
Query:       CCE28801.1  [L=208]
Description: uncharacterized protein CPUR_02490 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-21   75.1   0.0    6.2e-21   74.5   0.0    1.3  1  PX        PX domain


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   3.5e-25   6.2e-21       6     110 ..      99     206 ..      95     208 .] 0.91

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 3.5e-25
                 EEEEEEEEE...TTSSEEEEEEEEEETTS.SSEEEEEEEHHHHHHHHHHHHHHHT..TSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSC CS
          PX   6 vsvlerets...gskkhsyylyevelktg.akewtvkRrYsdFeeLhskLlrkfp..rvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhp 98 
                 v++++ +      ++++ +++++v+++t  +++ ++++rYs+F +++ kL ++fp  +  +P lP+k+l+++   + ++f+ekrr gL+ +L+++l +p
  CCE28801.1  99 VEIVDYTVVnggATSIGAFVVWNVRVETLnRSYMNIRKRYSEFDDFRGKLVKTFPnfENAVPLLPPKSLISK---FRPRFLEKRRIGLQYFLNCILLNP 194
                 56666444466688999***********99*************************88889**********97...************************ PP

                 HHHHSHHHHHHH CS
          PX  99 elrnsevlteFL 110
                 e++ s+vl+eFL
  CCE28801.1 195 EFSGSPVLKEFL 206
                 ***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1533.09
//
Query:       CCE28802.1  [L=583]
Description: uncharacterized protein CPUR_02491 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00013   21.4   0.8    0.00071   19.2   0.6    2.5  2  IQ        IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.6     4e-08   0.00071       2      20 ..      82     100 ..      81     101 .. 0.92
   2 ?   -2.4   0.0      0.34   6.1e+03      11      18 ..     511     518 ..     510     520 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4e-08
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkry 20 
                 +aa +IQ+ +RGy+aR+++
  CCE28802.1  82 QAAQVIQKTFRGYRARREL 100
                 6999*************86 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.34
                 HHHHHHHH CS
          IQ  11 wRGylaRk 18 
                 w G l+R 
  CCE28802.1 511 WMGKLVRS 518
                 99*****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1465  (0.0817112); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4412.54
//
Query:       CCE28803.1  [L=617]
Description: uncharacterized protein CPUR_02492 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-29  102.4   0.0    2.8e-29  101.1   0.0    1.7  1  SAS4      Something about silencing, SAS, complex subunit 4
  ------ inclusion threshold ------
       0.11   12.8  13.6       0.34   11.2  13.6    1.8  1  PNISR     Arginine/serine-rich protein PNISR


Domain annotation for each model (and alignments):
>> SAS4  Something about silencing, SAS, complex subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   0.0   3.1e-33   2.8e-29       1      98 [.     319     414 ..     319     415 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.1 bits;  conditional E-value: 3.1e-33
        SAS4   1 DpLsDklYekaHkrmerqEkrmrniekeraesEadrlerllekLqgqdwlrvlgkitkindpkdkkelerkreltikeieallekferwkkeekklkk 98 
                 DpL+D+l+++ Hkr+er E+++rn ek ra++E+d++ rlle Lqg+dwlr++g ++ +++ ++k+ +e++r ++i+ ++ +lekf+ w  eek++k 
  CCE28803.1 319 DPLPDSLFKPSHKRAERLERSIRNAEKGRAQHEKDQIVRLLEGLQGPDWLRIMGVSG-VTE-TKKRTFEPARLHFIQGCQGILEKFRAWSLEEKRRKL 414
                 9******************************************************99.9*9.9*******************************9985 PP

>> PNISR  Arginine/serine-rich protein PNISR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  13.6   3.7e-05      0.34      19     122 ..     412     521 ..     403     539 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.7e-05
       PNISR  19 EKmerEKqkklererrekeraerrkeekkesskeeeeaknprnlakskfdsedeksdeeeeeg......aegedsesqekasskksevdeqespeeeea 111
                  K+e+EK+  +e++++ ++++++++ ++  + +++ e ++ + + +++  +++++sde+  ++       +ge+++ q ++ ++++ev +++s+ ++++
  CCE28803.1 412 RKLEKEKAIHAEQQAALEQQQKDEQRRQPRRVIKDSEDDEGSDNDNLRGPDDSDNSDEDI-ADeidphiVKGESDQAQMDVIEDSEEVVTSQSDTSDAS 509
                 588999998888888866666666666666666666667777777777777666665554.44477788666666667777777777777777777777 PP

       PNISR 112 arkei.eesspa 122
                 ++k+  +e+ ++
  CCE28803.1 510 PAKQLrQEALAR 521
                 777774444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1302  (0.0726198); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 4503.98
//
Query:       CCE28804.1  [L=1460]
Description: related to TSM1-component of TFIID complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0005   20.3   0.1       0.56   10.4   0.0    2.7  2  Peptidase_M1_N  Peptidase M1 N-terminal domain
     0.0022   17.6   0.1     0.0059   16.2   0.1    1.7  1  Peptidase_M1    Peptidase family M1 domain


Domain annotation for each model (and alignments):
>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.2   0.00082       7.4       6      60 ..      35      91 ..      31     113 .. 0.72
   2 !   10.4   0.0   6.2e-05      0.56      83     169 ..     190     277 ..     155     284 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00082
                    EEEEEEETTTTEEEEEEEEEEEES.S-ECEEEEEESSEEE..ECEEEEECTTCTCEEE CS
  Peptidase_M1_N  6 dldlkidlkektfkGsvtitlqlk.eatseivldakdlki..ksvslsaevksesvki 60
                    ++ l+i++ e++++G+  + + +   ++++i+lda + +i  ++v + +e k  + ++
      CCE28804.1 35 EVVLDINFCERQISGTTDVYIVIFsDKIENICLDAANCEIdtENVII-TEMKEAQGEV 91
                    57799***************998879**************6433333.3333333333 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 6.2e-05
                     TCEEEEEEEEEEE-BSSSSEEE..EEEEEETSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTS.EEEESSECCCEEEETT CS
  Peptidase_M1_N  83 tskytLeieyegelndklaGly..kstYtdkgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkee.talSnmpeeeseklen 169
                      ++++++i ++   ++++ Gl     +  d+  + ++    +++  A  +fPC+D   ++  ++is+k+p +   al      ++e+++n
      CCE28804.1 190 HKQFKITIPFKN--KNPRDGLHfvGVDALDNRFTHMYSRHSLQPGTACCIFPCVDDHGARCDWKISVKFPRTLgDALQQALATQRETTKN 277
                     667777777777..8888887755333344555666777789****************************98766666665555555555 PP

>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   6.6e-07    0.0059      16     135 ..     395     509 ..     383     600 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.6e-07
                   HHTS--SSSEEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHHHHHHHHHHHHHHHSC CS
  Peptidase_M1  16 yfkvpYplpkldlvalpdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEGfatyleylildklep 112
                   y+  +Yp+ + ++ +l+d         +l ++ ++ll  + +   ++++ ++++ i+  l  qW+G     +  +dlwL  G a+y++ l+++kl +
    CCE28804.1 395 YTFAKYPFSNFKICFLDDMVEDTVPLHSLAFISSRLLFPE-D--VIDTEIETTRKIVFTLTYQWIGINMIPNTRNDLWLVLGIAHYMTELFMKKLCG 488
                   6677888888888888888888888888888887776665.3..333345556667789*******88889999*********************** PP

                   CCHCHHHHHHHCHHHHHHHHTST CS
  Peptidase_M1 113 ewevseqllleeveealsedald 135
                   ++e  +++ +++++ +l +  +d
    CCE28804.1 489 NNE--HRFRMKTLSDRLVQADVD 509
                   777..445445555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.24s 00:00:01.08 Elapsed: 00:00:00.42
# Mc/sec: 10504.91
//
Query:       CCE28805.1  [L=1459]
Description: related to transcription regulatory protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-73  246.9   0.0    3.4e-73  246.9   0.0    2.4  3  Sin3a_C         C-terminal domain of Sin3a protein
    2.8e-43  145.8   7.2    9.4e-18   64.1   0.0    4.5  4  PAH             Paired amphipathic helix repeat
    8.8e-40  134.7   0.0    2.6e-39  133.3   0.0    1.8  1  Sin3_corepress  Sin3 family co-repressor
  ------ inclusion threshold ------
      0.018   15.2   0.5      0.018   15.2   0.5    3.3  3  DUF2052         Coiled-coil domain containing protein (DUF205
      0.038   14.3   0.3      0.038   14.3   0.3    3.2  5  TSP_NTD         Tail specific protease N-terminal domain


Domain annotation for each model (and alignments):
>> Sin3a_C  C-terminal domain of Sin3a protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.7   3.8         5   1.8e+04      40      49 ..      37      46 ..      16      62 .. 0.36
   2 ?   -2.3   0.0      0.79   2.8e+03      65      87 ..     228     250 ..     210     256 .. 0.80
   3 !  246.9   0.0   9.4e-77   3.4e-73       1     286 []    1112    1384 ..    1112    1384 .. 0.95

  Alignments for each domain:
  == domain 1  score: -6.7 bits;  conditional E-value: 5
     Sin3a_C 40 ankvavelgl 49
                +++++ + + 
  CCE28805.1 37 RDQERRDQER 46
                1111111111 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.79
     Sin3a_C  65 eeeeeyYsqllelveklldGeid 87 
                  ++ ++Y+++l+ ++++    id
  CCE28805.1 228 HDQPDVYNRFLDIMKDFKSQAID 250
                 67889*********999877777 PP

  == domain 3  score: 246.9 bits;  conditional E-value: 9.4e-77
     Sin3a_C    1 FfaNttfYvflrlfqiLyeRLlkikqaeeqvaeevkerkankvavelgldkkesealalrleseeeeeeyYsqllelveklldGeidqsqfEdslRe 97  
                  Ff+N+t++vf+++fq+Ly RLl++k+++e v+  +++ +++k+a ++g+++++++ +  +     ++e+y+++++el+e++++G++d+++++d lR+
  CCE28805.1 1112 FFCNQTIFVFFSIFQTLYGRLLDMKKSKEMVSGVIERLNRPKPARDIGFTENHMTFFSPND----DPETYWPKTVELIEEYITGDVDENRYQDVLRH 1204
                  9*************************************************99998888777....******************************** PP

     Sin3a_C   98 mfgikaYklfTldKliqalvkqlqtiv.sDek..cqellelfekerskeettsqdeisyrkkaekllkdenlfriewkseskkltiqlldkddetld 191 
                  +++ +++ l+T+++++++l++ + t++ +D+k  + +l+++f + r+keet++q+ei+ rk aek++kd+++f i+w +++ ++t+++l++dd+t++
  CCE28805.1 1205 YYLRNGWRLYTIQDILKSLCRLALTCSsTDAKekTPDLIHQFLTARDKEETSYQTEIAARKLAEKCVKDGDIFVICWRPDKCEATVRWLQRDDSTFH 1301
                  ***************************9998888*************************************************************** PP

     Sin3a_C  192 ddeveaeerwkeYvesYvlveptegvereklkkvfLkRnlkaerkeeekkeeeeqekaekeeeaekeleveekleiriclnsyklvyvpgtedvl 286 
                  +de++ +erw++Y++s+++vepteg++r++l k +L+Rn+++ ++             ++++e +k l ++e+l+ +icl++ k+v++pgt++++
  CCE28805.1 1302 MDEMQIRERWQYYISSFIRVEPTEGIPRSRLSKIVLTRNMPSGDTD------------SDSDEIPKPLVYSEELTASICLKTCKMVWEPGTTEYF 1384
                  ***999**********************************544322............2223578899999**********************98 PP

>> PAH  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.13   4.6e+02      25      36 ..     221     232 ..     200     233 .. 0.91
   2 !   64.1   0.0   2.6e-21   9.4e-18       1      45 []     232     276 ..     232     276 .. 0.99
   3 !   61.3   2.3     2e-20   7.1e-17       1      45 []     444     488 ..     444     488 .. 0.99
   4 !   19.2   0.0   2.7e-07   0.00097       4      44 ..     636     676 ..     634     677 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.13
         PAH  25 eqVskLFhdhpd 36 
                  qV+  Fhd+pd
  CCE28805.1 221 DQVKVQFHDQPD 232
                 6999*******9 PP

  == domain 2  score: 64.1 bits;  conditional E-value: 2.6e-21
         PAH   1 evYkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqFL 45 
                 +vY++FLdi++d++++ id+++V+ +Vs+LF++hp L+++Fn+FL
  CCE28805.1 232 DVYNRFLDIMKDFKSQAIDTPGVINRVSELFAGHPNLIQGFNTFL 276
                 79******************************************8 PP

  == domain 3  score: 61.3 bits;  conditional E-value: 2e-20
         PAH   1 evYkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqFL 45 
                 e+Yk+FL+iL++yq+eq+ +++Vy+qV  LF   pdLl++F+qFL
  CCE28805.1 444 EIYKQFLEILQTYQREQKPIQDVYAQVTTLFNAAPDLLEDFKQFL 488
                 89******************************************8 PP

  == domain 4  score: 19.2 bits;  conditional E-value: 2.7e-07
         PAH   4 keFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqF 44 
                 +eFL++++ +++  id+ +++++ +++++++pdL+   ++F
  CCE28805.1 636 NEFLKLCNLFSQNIIDRDTLFHKGASFIKGNPDLMAFWKSF 676
                 79*********************************987777 PP

>> Sin3_corepress  Sin3 family co-repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.0   7.2e-43   2.6e-39       3      96 ..     705     797 ..     703     799 .. 0.97

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 7.2e-43
  Sin3_corepress   3 lgpsYrlLpksyqqpkcsgrdelekevLNdewvsvptwasedsgsfkasrknqyeealfrcEderyelDmvieanrstiklleelakkiesmse 96 
                     +gpsYrlLpk+++ ++csgrdel+++vLNd+w+s+ptwasedsg f+a+rknq+ee l+r+E+er+++D++iean ++i+lle++a+++ +ms+
      CCE28805.1 705 YGPSYRLLPKRERLKPCSGRDELCNSVLNDQWASHPTWASEDSG-FIAHRKNQFEEGLHRIEEERHDYDFNIEANLKCIQLLEPIAQQMLAMSS 797
                     89*****************************************8.********************************************99985 PP

>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.9    0.0023       8.3      70     108 ..      21      57 ..      13     111 .. 0.58
   2 ?   15.2   0.5   5.1e-06     0.018      81     168 ..     960    1091 ..     888    1095 .. 0.55
   3 ?   -3.3   0.4       2.4   8.5e+03     132     158 ..    1419    1445 ..    1382    1446 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0023
     DUF2052  70 aaerleaqqeeleeeeeeeeeeeeeeeeeeeeeeedeke 108
                 ++er +a q++  ee+ +++e++++ e+e e+e+e e++
  CCE28805.1  21 LDERHRAIQQQH-EEMRRDQERRDQ-EREREREREREHA 57 
                 444444444442.222222222222.1111111111111 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 5.1e-06
     DUF2052   81 l...........................eeeeeeeeeeeeeeeeeeeeeeedekekaea.............................deedeeeee 121 
                  +                           +      + ++ eee+e  +++++e     +                             +    +e++
  CCE28805.1  960 ErildflesfipvffdlpeemyqdklprM------QPDSGEEEVE--DPTPAEL----TngrsrrngrkgdllrgvldpgrngskprsQ----KEDS 1040
                  14556666666666666555553333321......2111111111..1111111....0111223455678999***999988643321....2222 PP

     DUF2052  122 ek.....eekeeeeekeeeaeaevlseeereelreeFtsimrerFLsGeDee 168 
                   +     e++ ++++ +ee+   +++e+ ++   e+++ +m   F++G D+ 
  CCE28805.1 1041 -AalgskETTPDQNSANEEEMPDAPEEAAQDVSNERWMPTMPTPFVDGGDNS 1091
                  .13432234444444444445555555559********************86 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.4
     DUF2052  132 keeeaeaevlseeereelreeFtsimr 158 
                   ++ +  + +s+ee +e+ + F + m 
  CCE28805.1 1419 VHNPSWTKDMSPEEVQEQNKIFRRWMD 1445
                  233334455777778888888877775 PP

>> TSP_NTD  Tail specific protease N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.0   3.9         5   1.8e+04     128     148 ..      32      48 ..      16      62 .. 0.32
   2 ?   -3.7   0.1       3.4   1.2e+04     131     159 ..     435     463 ..     427     472 .. 0.55
   3 ?   14.3   0.3   1.1e-05     0.038      81     160 ..     831     917 ..     811     937 .. 0.81
   4 ?   -2.4   0.0       1.3   4.8e+03     115     160 ..    1207    1259 ..    1204    1280 .. 0.58
   5 ?   -0.4   0.2      0.32   1.2e+03     101     127 ..    1293    1319 ..    1243    1330 .. 0.88

  Alignments for each domain:
  == domain 1  score: -7.0 bits;  conditional E-value: 5
     TSP_NTD 128 laelklkskkdkeikkskeel 148
                  +e++++    +e ++++ e 
  CCE28805.1  32 HEEMRRD----QERRDQERER 48 
                 1122222....1111111111 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.4
     TSP_NTD 131 lklkskkdkeikkskeelekryeeqlkrl 159
                 +k+  +++ ei k++ e++++y+++ k +
  CCE28805.1 435 IKNRFQDKPEIYKQFLEILQTYQREQKPI 463
                 34444444555666666666666555544 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 1.1e-05
     TSP_NTD  81 eyikellkkpfdfskdetleldrekapwakneaelkelwrkrlkneilaelklk.......skkdkeikkskeelekryeeqlkrls 160
                 +++ ++ ++pfd+      ++++++++w  ++ e++++w+ + +n  l++l  +       +kk+ ++k   + ++++yeeq +++ 
  CCE28805.1 831 DVVNDMYSHPFDVVPVLLARMKQKDEEWRFSQREWEKVWHAQTENMHLKSLDHMgilvkgnDKKNLTAKHLVDVIKTKYEEQRRERR 917
                 457788888999998888999***************************999999****97544555777788899999999988765 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.3
     TSP_NTD  115 lkelwrkrlkneilaelklk.......skkdkeikkskeelekryeeqlkrls 160 
                  l++ wr + +++il++l +        + k+k+ +   + l++r +e++ +++
  CCE28805.1 1207 LRNGWRLYTIQDILKSLCRLaltcsstDAKEKTPDLIHQFLTARDKEETSYQT 1259
                  56779999999999888877777765422223222222333333333333333 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.32
     TSP_NTD  101 ldrekapwakneaelkelwrkrlknei 127 
                  l+r+++ +  +e + +e+w+ ++ ++i
  CCE28805.1 1293 LQRDDSTFHMDEMQIRERWQYYISSFI 1319
                  5799***************98887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1268  (0.0707234); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.44
# Mc/sec: 9944.18
//
Query:       CCE28806.1  [L=205]
Description: uncharacterized protein CPUR_02495 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1451.77
//
Query:       CCE28807.1  [L=220]
Description: uncharacterized protein CPUR_02496 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1639.15
//
Query:       CCE28808.1  [L=382]
Description: related to glutaminyl-peptide cyclotransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-33  115.8   0.0    2.5e-33  115.5   0.0    1.1  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0   1.4e-37   2.5e-33      12     197 ..     115     347 ..     100     348 .. 0.81

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 1.4e-37
                    SEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHH.................GGCCSSEEEEEEEESSCSG........SSHHHHHHH CS
  Peptidase_M28  12 devlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaa.................sgsrpkrgvrflffdaEEa........gllGSkafa 82 
                      +l l AH+Ds++    p+f GA+D+A+++a+l+ +ar + +                  g + k+gv++lf+d+EEa        +l+G++ +a
     CCE28808.1 115 VSRLTLVAHFDSLAD--PPGFLGAIDSAAPCAMLMHTARSIDEaltakwkaeaevhgtddDGLDEKHGVQILFLDGEEAfvkwsatdSLYGARSLA 208
                    45899*********7..779***********************************9998766566******************************* PP

                    H...HHC..........CCTTEEEEEEECS-SSSS--EEE...............HHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STT CS
  Peptidase_M28  83 k...akp..........elkkiaavlnlDmvgsggkellf...............esgdkssselekelkalakpvgraaaedpfdersgrgrsDh 150
                    +   + +          +l+ i ++++lD++g++++ + +               e + ++ + le + +++    ++ ++ ++f +  g +++Dh
     CCE28808.1 209 EeweS-QfheaaslhrtPLDSISLFVLLDLLGTRNPSVPSyflpthwtyqsmaalEKRMRDLKLLETKPQRAFL-WNSDKQAEAFHH--GGIEDDH 300
                    76632.25778889999*******************9998899**88854444433333333333333333333.333333344443..6699*** PP

                    HHHHTTT--EEEECTSSS-TTTTSTTSSGGGB-HHHHHHHHHHHHHH CS
  Peptidase_M28 151 spflkagvpvldlaetgfpevyHtprDtldnidkdtlariaelvlel 197
                    +pf  +gv +l+l++ +fp v+H+ +D+ +n+d +t++++a++v ++
     CCE28808.1 301 IPFMMRGVDILHLIPSPFPAVWHKMADNGENLDLPTVRDWAKIVTAF 347
                    *******************************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2975.01
//
Query:       CCE28809.1  [L=283]
Description: related to oligosaccharyltransferase delta subunit (ribophorin II) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-30  105.5   0.0    3.6e-30  105.1   0.0    1.0  1  Ribophorin_II  Oligosaccharyltransferase subunit Ribophorin I


Domain annotation for each model (and alignments):
>> Ribophorin_II  Oligosaccharyltransferase subunit Ribophorin II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.0     2e-34   3.6e-30     382     627 ..      29     273 ..      11     276 .. 0.90

  Alignments for each domain:
  == domain 1  score: 105.1 bits;  conditional E-value: 2e-34
  Ribophorin_II 382 eisvadsdqsiapkktkvsypsklkksleadslqklrlkfalkdanegkeltphQafvrLthqktkqeviFvaeadskksYkfdldlgelaeefdy 477
                     +sv+++  +    ++k++ +++ kk+l++ ++ +l   + l++++  ++ +phQaf+  +   ++ e+ F  + +++ +  +++  ++l  ++  
     CCE28809.1  29 SVSVGKASDKV---TEKFTDANRVKKALALGHQDTLK--VLLTTKEGSAAKRPHQAFLVVKEAASGLEAPFPLTVKESGKAMVQISQKDLPIQLLA 119
                    55555554444...56778889999****99999875..5777776678888**********************9999999999999999999999 PP

  Ribophorin_II 478 lSGtYeveLivGDavlenpilwnvadvelkfpeeeekakkkkkkslykpkpeIkHlFRepekrPpkvvsntFtaLvllPllillvlwlklgvNlsn 573
                         +++Li G    ++  + +v+d+e+k +  ++ a+++    +y+   eI H+FR++ + Ppk+vs++F + vl+ +  l+++w+ lg N+ +
     CCE28809.1 120 STSPLKASLILGSTGSTKGSVTTVFDIEIKTDPSHA-APSSVAPLRYGKLDEIHHIFRADPQNPPKLVSLVFALAVLATVPALFIGWIALGGNFCH 214
                    9999**************************877776.77788****************************************************99 PP

  Ribophorin_II 574 fpfs.....lsailFhlglgaillLyvlFWlkLnmftTlkyLallgiftflvGnrlLss 627
                     + +     ls  lF ++++a+ + ++l++  +n+f+Tl +++++g++ +++G ++L +
     CCE28809.1 215 AKKAmsnapLSHALFFGSVVAMEGVFFLYYSAWNLFQTLPVMGVVGAIAVFSGTKALGE 273
                    977777999***********************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2126.48
//
Query:       CCE28810.1  [L=352]
Description: uncharacterized protein CPUR_02499 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-13   48.6   0.0    1.7e-12   47.5   0.1    1.5  2  Abhydrolase_1  alpha/beta hydrolase fold
    4.4e-11   43.8   0.2    6.5e-11   43.3   0.2    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    6.8e-11   41.9   0.0    1.8e-10   40.5   0.0    1.7  1  Hydrolase_4    Serine aminopeptidase, S33
    0.00058   19.1   0.0      0.002   17.3   0.0    1.7  1  DUF2048        Abhydrolase domain containing 18
  ------ inclusion threshold ------
      0.014   14.9   0.0        2.2    7.7   0.0    2.2  2  Esterase_phd   Esterase PHB depolymerase
      0.014   14.9   0.0        4.8    6.6   0.0    2.3  2  Peptidase_S9   Prolyl oligopeptidase family
      0.019   15.1   0.0      0.036   14.2   0.0    1.5  1  Thioesterase   Thioesterase domain


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.1   6.8e-16   1.7e-12       4     118 ..      60     174 ..      58     186 .. 0.80
   2 ?   -2.4   0.0       1.1   2.9e+03     212     250 ..     289     328 ..     213     334 .. 0.60

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 6.8e-16
                    EEE-STTT...CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTT...SSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1   4 vilhGlpg...ssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgd...dkltlvGhSmGGmialayaae 93 
                    v++ Gl++   ++ ++     + +L  d+++v+++D rG g+S++++     +y+t ++a d   +ld+lg+   ++l++ G S+GGmia + a +
     CCE28810.1  60 VLIMGLGAiltTWQIQTH--YFGHLHGDKYTVLVFDNRGIGRSDAPI----FRYSTSAMALDTIELLDHLGWtspRQLNIAGLSLGGMIAQEIACL 149
                    555556554444444444..56678888*******************....689997777666677*****8333589****************** PP

                    HGGGEEEEEEESECSSCCHHHHHHH CS
  Abhydrolase_1  94 yperVkalvllgaidpaaslieaqr 118
                     p+r+++l ll++ ++a s +++ +
     CCE28810.1 150 IPQRIQSLSLLCTTAYAESGRSLSQ 174
                    *************888887777665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
                    S.EEEEEEETTCSSSCH.HHHHHHHHCHTSEEEEEEETCSS CS
  Abhydrolase_1 212 a.ptlvisgtsDplvpp.kaledlaqllpkkrlvvisdagH 250
                       +lv++g+ D      +  + +++  p+   +++++ gH
     CCE28810.1 289 ReRILVMHGARDDTLVVrNGERLIREVKPG-VGIIVEGMGH 328
                    246777777444444441333333333555.5555555555 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.2   2.5e-14   6.5e-11       1     219 [.      59     340 ..      52     341 .. 0.55

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 2.5e-14
                    EEEE--GC.....GC.HHHHHHHHCCT.CEEEEE--TTSTS-GGCS--HHH...CHHHHHHHCCTT...TTSEEEEEETCHHHHHHHHHHCC.... CS
  Abhydrolase_6   1 vlllHGagssassWl.vapLaallaag.vhvlapDlpGhGrsdpppldled...ladlaalldelaa.gggpvvlvGHSlGGalalaaapla..lv 88 
                    ++l+ G+g+  + W+ +++    l+++ ++vl++D +G Grsd p + ++    ++d  +lld+l+  ++++  + G SlGG++a++ a l   ++
     CCE28810.1  59 IVLIMGLGAILTTWQiQTHYFGHLHGDkYTVLVFDNRGIGRSDAPIFRYSTsamALDTIELLDHLGWtSPRQLNIAGLSLGGMIAQEIACLIpqRI 154
                    6777788888888955556655557778999******************997655777888888888999999**************666668866 PP

                    EE.EEES-..----TTT...S----TTHHHHHH.........TT-C.....CCCHCCH......S-HSCCCCHHHCCCCHCHCCCGHH........ CS
  Abhydrolase_6  89 vg.vlldppptalpagl...laaalelllalla.........llrl.....lawlsre......plprlfladedadaawrarlarla........ 152
                     +  ll++  ta+  +     + +l +l+++++            +     l++l+++      p p         +++  +r a+ +        
     CCE28810.1 155 QSlSLLCT--TAYAESGrslSQSVLLHLKRFRPksedqsihdT--ArtvfpLEFLTAKddtialPSP---------RTTPKCRPADTPdgeyphfd 237
                    66788888..333333355444445555555553333222221..0112222333222222222111.........22222222222233333222 PP

                    ........................HHCCHHCHTTCCHHTT-TTGC......................EEE.CTT-CHHHHCHH..CCCH.STTEEE CS
  Abhydrolase_6 153 ........................allaglgllpaaawadlpvpl......................lvl.ggeDplvprlle..rlla.qagarl 198
                                                         ++  +++                       lv+ g++D+++   ++  ++l    + ++
     CCE28810.1 238 shfqrfqaqelhkrhgkvgtftrsG------------FFCQLSAAaghsksaaqlakmadevgreriLVMhGARDDTLV--VRngERLIrEVKPGV 319
                    2222333444444333444333331............222222224444444444444555588876555577788444..441144444333333 PP

                    TCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 199 pvvlpgaGHlphleepdevae 219
                    +++++g GH+p +e+ ++++e
     CCE28810.1 320 GIIVEGMGHAPIMERSAWFNE 340
                    399*******99977688765 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   6.8e-14   1.8e-10      22     238 ..      77     334 ..      56     335 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 6.8e-14
  Hydrolase_4  22 elaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklka 119
                  + + +L    + v+ +D+rG Grs+       s++ +  D  ++++++  ++p++ l + G S+GG+ia++++   p++++ l l ++    ++    
   CCE28810.1  77 HYFGHLHGDKYTVLVFDNRGIGRSDA-PIFRYSTSAMALDTIELLDHLGWTSPRQ-LNIAGLSLGGMIAQEIACLIPQRIQSLSLLCTTAYAES---G 169
                  5677899999**************64.44478999**************999998.9************************8777777655554...4 PP

  Hydrolase_4 120 ppllklllkllgkllpklqv.......................................snnlkadslsrdp..evvaayeadplvhgkitvrlllel 176
                  ++l + +l  l+++ pk +                                        +++  +++ s+ +  + +++++++  v+  ++ +++ +l
   CCE28810.1 170 RSLSQSVLLHLKRFRPKSEDqsihdtartvfplefltakddtialpsprttpkcrpadtPDGEYPHFDSHFQrfQAQELHKRHGKVGTFTRSGFFCQL 267
                  566666666666666666666669********************************999555555555555500555678888888999999999999 PP

  Hydrolase_4 177 ldamkrleeraakitlP.......llllhGeaDkvvdpeasrelyerlgskdktlklypglyHellnEp 238
                    a+ + ++ a+ +++        +l++hG++D     ++ ++l+++++       + +g+ H  ++E+
   CCE28810.1 268 SAAAGHSKSAAQLAKMAdevgrerILVMHGARDDTLVVRNGERLIREVKP--GVGIIVEGMGHAPIMER 334
                  999999999999999555666666**********9999**********96..77788999999998885 PP

>> DUF2048  Abhydrolase domain containing 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.7e-07     0.002     158     324 ..     111     321 ..     104     346 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.7e-07
     DUF2048 158 alilEslvllhwlereGyGplgltGlSmGGhmaslaasnwpkplvlvpclswstas...avfteGvlsksiawdvLekqledgnyrerl.......... 243
                 a+ l++ +ll  l    + +l ++GlS+GG+ a+  a++ p+ + ++ +l  ++ +    + ++ vl +       + + ed++ +++           
  CCE28810.1 111 AMALDTIELLDHLGWTSPRQLNIAGLSLGGMIAQEIACLIPQRIQSLSLLCTTAYAesgRSLSQSVLLHLK---RFRPKSEDQSIHDTArtvfpleflt 206
                 55666677777777777889**********************99988777654322000222222222222...2222233444444445556666666 PP

     DUF2048 244 ................................stasdaaaeekaakldeak.erkaekealrfmrllmdelthlknfsvpkdtsliivv.aAkdDayvp 308
                                                 ++++  a+e ++ + +  + +r     +l  + +  +++ +l++++ ++  + i v+  A+dD  v 
  CCE28810.1 207 akddtialpsprttpkcrpadtpdgeyphfdsHFQRFQAQELHKRHGKVGTfTRSGFFCQLSAAAGHSKSAAQLAKMADEVGRERILVMhGARDDTLVV 305
                 666666666666666666666666666655543333333333333333222022222456666666666666666666666555554441466666666 PP

     DUF2048 309 resvaslqeiwpgsev 324
                 r++ + + e+ pg+ +
  CCE28810.1 306 RNGERLIREVKPGVGI 321
                 6666666666666655 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00085       2.2      96     140 ..     128     172 ..     108     203 .. 0.85
   2 ?    5.1   0.0    0.0055        14     171     200 ..     291     320 ..     252     334 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00085
  Esterase_phd  96 aarvyvaGlsaGaaladllalhypdvfaavalhsGlalGeaadvi 140
                   + ++ +aGls G+ +a+ +a   p++  +++l    a+ e+  ++
    CCE28810.1 128 PRQLNIAGLSLGGMIAQEIACLIPQRIQSLSLLCTTAYAESGRSL 172
                   456789***************************999999876655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0055
  Esterase_phd 171 palvvqGdadtvvavknaeslvvalrrlsG 200
                     lv++G  d ++ v+n e+l+ +++ + G
    CCE28810.1 291 RILVMHGARDDTLVVRNGERLIREVKPGVG 320
                   4689*****************999887766 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.003       7.8      53      79 ..     118     144 ..     106     152 .. 0.82
   2 ?    6.6   0.0    0.0019       4.8     142     170 ..     288     316 ..     265     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.003
                   HHHHHTTS--GGGEEEEEETHHHHHHH CS
  Peptidase_S9  53 ealakegyvdserlaitGgSyGGyltg 79 
                   e l   g++++++l i G S GG+ + 
    CCE28810.1 118 ELLDHLGWTSPRQLNIAGLSLGGMIAQ 144
                   4444558****************9875 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0019
                   ---EEEEEEETT-SSS-THHHHHHHHHHH CS
  Peptidase_S9 142 aypplLlihGlaDdrvppaealklvaaLq 170
                      ++L++hG  Dd  ++ ++++l+++++
    CCE28810.1 288 GRERILVMHGARDDTLVVRNGERLIREVK 316
                   5689*******************999865 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.4e-05     0.036      54      89 ..     118     152 ..     106     212 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
                   HHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHH CS
  Thioesterase  54 eyaealrqiqpegPyalfGhSlGgllAfevArqLes 89 
                   e++++l ++ p+  ++++G SlGg++A+e+A    +
    CCE28810.1 118 ELLDHLGWTSPR-QLNIAGLSLGGMIAQEIACLIPQ 152
                   567889999999.9****************976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2575.92
//
Query:       CCE28811.1  [L=729]
Description: probable NMT1-N-myristoyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-79  266.6   0.0    1.9e-79  266.1   0.0    1.3  1  NMT_C           Myristoyl-CoA:protein N-myristoyltransferase,
    8.6e-71  236.9   0.4    2.5e-70  235.4   0.0    1.8  2  NMT             Myristoyl-CoA:protein N-myristoyltransferase,
      3e-14   53.0   0.0    7.7e-14   51.7   0.0    1.6  1  DDE_3           DDE superfamily endonuclease
    2.4e-05   24.4   0.1     0.0012   19.0   0.0    2.4  2  Acetyltransf_9  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.32   10.6   7.4       0.56    9.8   7.4    1.3  1  GET2            GET complex subunit GET2
       0.74    9.8   5.7        1.7    8.6   5.7    1.6  1  PGA2            Protein trafficking PGA2


Domain annotation for each model (and alignments):
>> NMT_C  Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.1   0.0   6.3e-83   1.9e-79       2     209 .]     516     727 ..     515     727 .. 0.93

  Alignments for each domain:
  == domain 1  score: 266.1 bits;  conditional E-value: 6.3e-83
                 TTSS--BTTS-HHHHHHHH---SS-SSTTEEE--CCCHHHHHHHHHHHHTTSSEEEE--HHHHHHHHC-SSTTSBTTTEEEEEEEETTS.EEEEEEEEE CS
       NMT_C   2 vgFsalprnstlarlvklyklpeetktkglremeekDveavtellekylkrfdlaqvfseeeveHwllskkkkreeqvvwsYVvedeetkkitDfvSFY 100
                 +gFs+lp++s+ + ++++y+lpee +tkglr+m+e+Dv+av +ll++yl+rfd+a++f+ e+ +Hw+l+  kk+ +qv+wsYVved+++ +itDf+SF+
  CCE28811.1 516 CGFSPLPAGSKPQYQIRKYALPEEAATKGLRPMQEQDVDAVVSLLTRYLARFDMAPEFTAEDAKHWFLP--KKDGKQVIWSYVVEDNDK-NITDFFSFF 611
                 79*******************************************************************..6789***********996.********* PP

                 E--EEETT-SS-SEEEEEEEEEEE.......ECCC..TTHHHHHHHHHHHHHHHHHHCTESEEEEESSTTGGGCTTTTT-EEEEEEEEEEEETEEE.-. CS
       NMT_C 101 slpstvlknpkhktlkaAYlfyya.......stet..kklkkrlkeLvkdalilakkakfDvfnaltlmdnklfleelkFgagdgkLnYYLyNyrvapi 190
                 s++s+++k++  ++l++ Ylfyya             ++lk+rl++L+kdalilakkak+Dvfnaltlmdn+lfle++kFgagdg+L+YYL+Nyr++pi
  CCE28811.1 612 SVESSIIKSN--DVLRVGYLFYYAtevglttP--PdkDALKTRLNALIKDALILAKKAKLDVFNALTLMDNALFLEQQKFGAGDGQLHYYLFNYRANPI 706
                 *******975..79**********66665441..1557999********************************************************** PP

                 .-SB-CCGSB.TT....BEXX CS
       NMT_C 191 aggvkeekeleekkg..vGvv 209
                 aggv++ ++l+e++   +G+v
  CCE28811.1 707 AGGVNAGNRLDEENLsgIGLV 727
                 *******99986665568876 PP

>> NMT  Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.4   0.0   8.3e-74   2.5e-70       7     160 .]     348     501 ..     344     501 .. 0.99
   2 ?   -1.4   0.1      0.62   1.8e+03      16     101 ..     534     617 ..     526     630 .. 0.61

  Alignments for each domain:
  == domain 1  score: 235.4 bits;  conditional E-value: 8.3e-74
                 -GGGS-SS----STTEEEEE--TTSHHHHHHHHHHHHHHSSCTTTSTEEE---HHHHHHHCTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEE CS
         NMT   7 kveevrkeplklpkgfewvtvdledeeelkevyelLsenYvedddamfrfkyskeflkWalkppgykkewhvgvrvkkskkLvafisaipvklrvrkkv 105
                 kv+ev kep +l++gf wvtvdl d+ e+kevyelL+ +Yvedd+amfrf+y  e+l+Wa+++pg+++++h+gvr+++s+kLvafisaip+k+rvr+kv
  CCE28811.1 348 KVDEVDKEPQALVEGFDWVTVDLADDGEMKEVYELLNGHYVEDDEAMFRFNYIPEVLRWAMMAPGWQRKYHIGVRATQSRKLVAFISAIPIKIRVRNKV 446
                 689************************************************************************************************ PP

                 EEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEEEEESSTSSSESEEE CS
         NMT 106 lklveinfLcvhkklRskrlapvlikEitRrvnlkgifqavytagvvlpkpvstC 160
                 ++++e+nfLcvhkklR krlapvlikE+tR  nl+ ++q +ytagvvlp+pvstC
  CCE28811.1 447 FTTSEVNFLCVHKKLRGKRLAPVLIKEVTRVSNLDSVWQGLYTAGVVLPRPVSTC 501
                 ******************************************************9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.62
                 ---STTEEEEE--TTSHHHHHHHHHHHHHHSSCTTTSTEEE---HHHHHHHCTSTT--GG.GEEEEEETTTTEEEEEEEEEEEEEEE CS
         NMT  16 lklpkgfewvtvdledeeelkevyelLsenYvedddamfrfkyskeflkWalkppgykke.whvgvrvkkskkLvafisaipvklrv 101
                 ++lp++   + +   +e++++ v++lL++ Y+   d    f+ +++  +W l  ++ k+  w   v ++++k++  f s   v+ ++
  CCE28811.1 534 YALPEEAATKGLRPMQEQDVDAVVSLLTR-YLARFDMAPEFT-AEDAKHWFLPKKDGKQViWSYVV-EDNDKNITDFFSFFSVESSI 617
                 55666666666666777888888888864.666666666666.55667788876665554144444.45667777777666665555 PP

>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   2.6e-17   7.7e-14      60     139 ..      29     104 ..      24     109 .. 0.87

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 2.6e-17
       DDE_3  60 naedfaeflerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsf 139
                 +++   ++l++ l t l++  +++  Dn++iH ++ ++  +ee   +++ l +PpySP+lNpiE++ws lk++++k r+ 
  CCE28811.1  29 TSAAHCDHLDEYLSTMLDN-DTIFMDDNLPIHMARNVKICLEE--LGMTPLEWPPYSPDLNPIENLWSCLKQQIFK-RAS 104
                 6666778999999999996.6666668****************..*******************************.544 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.9e-07    0.0012       4      98 ..     370     474 ..     367     482 .. 0.90
   2 ?    3.0   0.0     0.033     1e+02       2      52 ..     545     602 ..     544     634 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.9e-07
                     EE-GGGHHHHHHHHHHHTT----H..........HHHHHHHHHHTTSEEEEEEE..TTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS CS
  Acetyltransf_9   4 elteedldevlellkyaFqdeespl.......e.eireyfrklleesrvlgaed..ngelvgqlallplelnvpGktlkaagvtgVavapehrgr 88 
                      +++ +++ev+ell+  + +++++        e  +++   +  +++ ++g++     +lv+ + ++p +++v++k +++  v   +v+ + rg+
      CCE28811.1 370 LADDGEMKEVYELLNGHYVEDDEAMfrfnyipEvLRWAMMAPGWQRKYHIGVRAtqSRKLVAFISAIPIKIRVRNKVFTTSEVNFLCVHKKLRGK 464
                     678999*****************999999998777789999999999999998876888************************************ PP

                     -HHHHHHHHH CS
  Acetyltransf_9  89 gvlskLlara 98 
                      ++  L++++
      CCE28811.1 465 RLAPVLIKEV 474
                     *998888776 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.033
                     EEEE-GGGHHHHHHHHHHHTT----H......HHHHHHHHHHTTS...EEEEEEETTE CS
  Acetyltransf_9   2 irelteedldevlellkyaFqdeespl....eeireyfrkllees...rvlgaednge 52 
                     +r+++e+d+d+v++ll +  ++ + +     e+++ +f ++ + +   + +++edn++
      CCE28811.1 545 LRPMQEQDVDAVVSLLTRYLARFDMAPeftaEDAKHWFLPKKDGKqviWSYVVEDNDK 602
                     699*************998877766665765356666655555434447788888887 PP

>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   7.4   0.00019      0.56      39     150 ..     198     304 ..     189     346 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00019
        GET2  39 kssttsvLdepaaekttpasttasssssasehddpeiediseiavkpk.ktasskkksplseesepeap.qldqllkqllqqqqqgnsensqdaesstP 135
                   +++sv +e+++++t  +++tasss+++++    + +++++++++++ ++++ +k +++ e ++pe+  +l++l  +l+q+  + ++++     +  P
  CCE28811.1 198 VDDAESVSEEDEPTATEGTTDTASSSKKKKK--KSKRNKVKQLLSTKSdQEKHDDKVKEAIEGLSPEQMkELASLNSGLMQELAARSGTS-----NPSP 289
                 3345799997777777888778777777663..334444444544443034444555666677777765699999999998843333333.....3346 PP

        GET2 136 dlfsqllkmmkqgeg 150
                 d ++ +lk+++  e 
  CCE28811.1 290 DQVAAMLKSLSLSEI 304
                 777778887765443 PP

>> PGA2  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.7   0.00057       1.7      77     135 ..     196     254 ..     176     259 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00057
        PGA2  77 gesdedddegeeeedvakasgvpewgkkarkrqk...kvlkkleeeaeerkkeeeddkdiae 135
                 +++d+ ++ +ee+e +a+++++    ++ +k++k   + +k+l++ +    ++e+ d+ ++e
  CCE28811.1 196 KQVDDAESVSEEDEPTATEGTTDTASSSKKKKKKskrNKVKQLLSTKS---DQEKHDDKVKE 254
                 455555555555444444444433333333333300034444444444...45555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1644  (0.091695); expected 358.6 (0.02)
Passed bias filter:                      832  (0.0464053); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.41
# Mc/sec: 5375.04
//
Query:       CCE28812.1  [L=380]
Description: uncharacterized protein CPUR_02501 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-12   47.6   0.8    5.3e-12   46.8   0.8    1.4  1  Abhydrolase_6  Alpha/beta hydrolase family
      4e-12   45.9   0.1    6.2e-12   45.3   0.1    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
    3.9e-08   33.3   0.3    6.6e-08   32.5   0.3    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
    8.1e-06   25.8   0.1    1.5e-05   24.9   0.1    1.4  1  Abhydrolase_3  alpha/beta hydrolase fold
    0.00021   21.2   0.1     0.0014   18.4   0.1    2.2  3  Abhydrolase_2  Phospholipase/Carboxylesterase
     0.0019   18.3   0.1     0.0033   17.6   0.1    1.3  1  Thioesterase   Thioesterase domain
     0.0029   17.2   0.2     0.0042   16.7   0.2    1.4  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
  ------ inclusion threshold ------
      0.017   14.1   0.0      0.024   13.6   0.0    1.1  1  DUF818         Chlamydia CHLPS protein (DUF818)
      0.018   15.0   0.0      0.033   14.2   0.0    1.3  1  Cutinase       Cutinase
      0.038   13.4   0.0      0.072   12.5   0.0    1.5  1  Peptidase_S9   Prolyl oligopeptidase family
        0.1   12.5   0.1       0.19   11.6   0.1    1.4  1  Lipase_3       Lipase (class 3)


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.8   3.2e-15   5.3e-12       4     136 ..     123     278 ..     120     372 .. 0.56

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 3.2e-15
                    E--GC......GCHHHHHHHHCCT.CEEEEE--TTSTS-GGCS--HHHCHHH...HHHHCCTT...TTSEEEEEETCHHHHHHHHHHCC....... CS
  Abhydrolase_6   4 lHGagss.assWlvapLaallaag.vhvlapDlpGhGrsdpppldledladl...aalldelaa.gggpvvlvGHSlGGalalaaapla.....lv 88 
                     HG  ++ a ++++++ + l     +hv+a+D++G+G+s++ p +   ++d    ++ ++++a+  + ++vl+GHSlG+a+a+ +a  +     + 
     CCE28812.1 123 FHGNAGDvAQMYRAPSYHSLTDTSsYHVIAIDYRGFGHSTGVPSEQGLIQDAetlVEWATKVAGiPASRIVLFGHSLGTAVATGVAERCttrgiDF 218
                    6774433355554334433333335777*********997777444445555222555555554667777**************777779999866 PP

                    EE.EEES-..----TTT.........S----TTHHHHHH..TT-C......CCCHCCHS-HSCCCC CS
  Abhydrolase_6  89 vg.vlldppptalpagl.........laaalelllalla..llrl......lawlsreplprlfla 136
                    +g vl+++   + ++++         + +++ +l a+++     l      + w+s++ l+ ++++
     CCE28812.1 219 AGiVLVSG---FSDLSNlligyrisgIFPIMGPLIAWPSavE--LlkravvDKWPSADRLA-RIVR 278
                    77899999...3333333434442222222222222222210..12222445666443222.2222 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1   3.8e-15   6.2e-12       6     149 ..     119     278 ..     114     314 .. 0.72

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 3.8e-15
  Hydrolase_4   6 vvvlvHG.laehsgryae.laeaLaa.qGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvk..eehpelplfllGhSmGGliallyllryp 98 
                  +++ +HG  ++ ++ y     + L++   ++v+a+D+rG+G+s      vps + +++D++++ve +   +  p ++++l+GhS+G ++a+ +++r+ 
   CCE28812.1 119 LILYFHGnAGDVAQMYRApSYHSLTDtSSYHVIAIDYRGFGHS----TGVPSEQGLIQDAETLVEWATkvAGIPASRIVLFGHSLGTAVATGVAERCT 212
                  56677773345666666656667765257**************....459**************888733555666******************7777 PP

  Hydrolase_4  99 d...kvaglilsaPalkikakl.........k.appllkl..llkllgkllpklqvsnnlkadsls 149
                      ++ag++l++ + ++ + l         + + pl ++  + +ll++++ +  +s+  +a+ + 
   CCE28812.1 213 TrgiDFAGIVLVSGFSDLSNLLigyrisgifPiMGPLIAWpsAVELLKRAVVDKWPSADRLARIVR 278
                  66679********99999877666666555533333333333445555555555554555555555 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.3   4.1e-11   6.6e-08       2     105 ..     119     225 ..     118     240 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 4.1e-11
                    EEEEE-STTTCGGG.GTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHH..HHHCTTSSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdv.waerglapaLakd.gfdvillDlrGvgySspapacinddygtasvaddldri..ldalgddkltlvGhSmGGmialayaae 93 
                    +++++hG +g     +++++  +  + +  ++vi++D rG+g+S+  p++  +     + +  ++++  ++  +  +++l GhS+G+++a+ +a++
     CCE28812.1 119 LILYFHGNAGDVAQmYRAPSYHSLTD-TsSYHVIAIDYRGFGHSTGVPSE--QGLIQ-DAETLVEWAtkVAGIPASRIVLFGHSLGTAVATGVAER 210
                    6899******6655255544444444.36*******************97..54554.47778889999**********************99998 PP

                    H...GGGEEEEEEES CS
  Abhydrolase_1  94 y...perVkalvllg 105
                            +++vl++
     CCE28812.1 211 CttrGIDFAGIVLVS 225
                    654444455555555 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   9.4e-09   1.5e-05       1     112 [.     120     230 ..     120     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 9.4e-09
                    EEEE--STTTS--TTTT..HHHHHHHHHHHTSEEEEEE---.TTTS-TTH...HHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldth..dalcrelakelgavvvsvdYrl.APehpfPa...avedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaaval 90 
                    ++yfHG +    ++++    +  ++l++ + + v+++dYr     + +P     ++da + ++w+ +    +g+ +srivl+G S G   a+ va 
     CCE28812.1 120 ILYFHGNAG---DVAQMyrAPSYHSLTDTSSYHVIAIDYRGfGHSTGVPSeqgLIQDAETLVEWATKV---AGIPASRIVLFGHSLGTAVATGVAE 209
                    689999864...4433335677888999************523334444311268999999***9999...69*********************** PP

                    HHHHTT---EEEEEEESE-SST CS
  Abhydrolase_3  91 rardegepkvagqvliyPvtdl 112
                    r+  + ++  ag+vl++   dl
     CCE28812.1 210 RCTTR-GIDFAGIVLVSGFSDL 230
                    ****9.699*******998776 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.72   1.2e+03       9      27 ..     112     131 ..     110     147 .. 0.77
   2 !   18.4   0.1   8.8e-07    0.0014     100     141 ..     185     229 ..     163     235 .. 0.79
   3 ?   -3.2   0.0       3.8   6.1e+03     156     184 ..     283     311 ..     275     341 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.72
                    -SS---EEEEEE--.TT--S CS
  Abhydrolase_2   9 pkdkaqavviflHG.lGdsg 27 
                    ++d+ +++++++HG  Gd +
     CCE28812.1 112 KSDPDAKLILYFHGnAGDVA 131
                    67999*********335554 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 8.8e-07
                    TT--GGGEEEEEETHHHHHHHHHHHT-SS...--SEEEEES---T CS
  Abhydrolase_2 100 kgipssriiigGFSqGaalalylaltlpk...klggivafsgalp 141
                    +gip+sri+++G S G+a+a+  a  +++     +giv +sg+  
     CCE28812.1 185 AGIPASRIVLFGHSLGTAVATGVAERCTTrgiDFAGIVLVSGFSD 229
                    57******************98777666655699********965 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.8
                    G-EEEEEEETT-SSS-HHHHHHHHHHHHT CS
  Abhydrolase_2 156 klpilqiHgeeDpvvplalgkaakevlkk 184
                    kl   +iH + D  +p ++   + ++  +
     CCE28812.1 283 KLRLELIHSYHDWDIPWQHNDVLFQAAAN 311
                    55566788888888888776544333333 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1     2e-06    0.0033       6     100 ..     123     224 ..     119     228 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2e-06
                   E--TTC.CSGGGHHHHHHCTTC..EEEEEEECSTTST......SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-S CS
  Thioesterase   6 fppagG.sasvfrslasklsdp..vvevlavqlpgre......rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGla 93 
                   f++  G  a+++r  + ++ ++     v+a+ ++g++      +++ +++++e+l++  ++           +lfGhSlG ++A  vA++   +G  
    CCE28812.1 123 FHGNAGdVAQMYRAPSYHSLTDtsSYHVIAIDYRGFGhstgvpSEQGLIQDAETLVEWATKVAGIPAS--RIVLFGHSLGTAVATGVAERCTTRGID 217
                   55555555556665555544444566699999999988866655666777777777665555433333..599**********************99 PP

                   EEEEEEE CS
  Thioesterase  94 vkslfli 100
                    ++++l+
    CCE28812.1 218 FAGIVLV 224
                   9999886 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   2.6e-06    0.0042      58     121 ..     148     210 ..     122     332 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.6e-06
                    -EEEEEE-TTSTTS-S---TTTTTHHHHHHHHHHHHHHC.TTEEEEEEEEEECHHHHHHHHHCTT CS
  Peptidase_S15  58 YavVvqdvrGtggSeGeftvgdsdeaedgadvidWlakq.pwsnGkVgmtGiSYlGttqllaaat 121
                    Y+v+  d rG+g+S+G+     +  ++d+   ++W++k       ++  +G S +  +++ +a++
     CCE28812.1 148 YHVIAIDYRGFGHSTGVPSE--QGLIQDAETLVEWATKVaGIPASRIVLFGHSLGTAVATGVAER 210
                    9****************988..99**************988899999999999999999999875 PP

>> DUF818  Chlamydia CHLPS protein (DUF818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.5e-05     0.024     140     231 ..     120     206 ..     107     225 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
      DUF818 140 lLislGnsdlleeralleskddslkrlakllganilvfnYPGvmsskGeitrenlakayqaCvrYLrDkeqGPkakeiiayGYsLGtlvqae 231
                 +L+ +Gn   + +  +   +  s++ l +++   ++  +Y G  +s+G  + + l +  +  v +   k +G  a +i+ +G+sLGt v + 
  CCE28812.1 120 ILYFHGNAGDVAQ--M--YRAPSYHSLTDTSSYHVIAIDYRGFGHSTGVPSEQGLIQDAETLVEWA-TKVAGIPASRIVLFGHSLGTAVATG 206
                 5666666665555..3..456689999999999******************************996.6899999**************9765 PP

>> Cutinase  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     2e-05     0.033      30     101 ..     139     212 ..     123     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
                 HHHH.TTT-EEEEE------CGGSTTSS-HHHHHHHHHHHHHH..HHH-TT-EEEEEEETHHHHHHHHHHTT.. CS
    Cutinase  30 lesavgsksvavqgvnYpAdleqlyegseeagakeaaalvqsl..askCPdtkivlgGYSqGaqvidnaiegga 101
                  +s + ++s  v +++Y+   +++   se+  +++a++lv+ +  ++  P ++ivl G S G++v++ ++e+ +
  CCE28812.1 139 YHSLTDTSSYHVIAIDYRGFGHSTGVPSEQGLIQDAETLVEWAtkVAGIPASRIVLFGHSLGTAVATGVAERCT 212
                 4455566778889999999999988888888899999999866225678*****************99988754 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.4e-05     0.072      42     171 ..     168     311 ..     140     327 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.4e-05
                   HHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHH...H-GGG-SEEEEESE---CCCHHCSTTS.....THHHCCCC--TTT..CHHHH CS
  Peptidase_S9  42 qnefdDfiaaaealakegyvdserlaitGgSyGGyltgaaln...qrpdlFkaavaevpvvdvlrydsdtdl.....lteeymewgnpee..neegy 128
                   q  ++D  + +e+++k   + ++r++++G+S G  ++  +++    r+  F+++v + +++d+ +     ++     +      w+ + e  +++  
    CCE28812.1 168 QGLIQDAETLVEWATKVAGIPASRIVLFGHSLGTAVATGVAErctTRGIDFAGIVLVSGFSDLSNLLIGYRIsgifpIMGPLIAWPSAVEllKRAVV 264
                   566889999999999999999************98887777633357778*************9988877776665533357788888777777788 PP

                   HHHHHH-CGGG--....---EEEEEEETT-SSS-THHHHHHHHHHH- CS
  Peptidase_S9 129 kelspyspldnvk....aypplLlihGlaDdrvppaealklvaaLqk 171
                   +++ +++ l+++      + +l lih+ +D  +p ++   l++a  +
    CCE28812.1 265 DKWPSADRLARIVrrtqHKLRLELIHSYHDWDIPWQHNDVLFQAAAN 311
                   88888888887768887778888999999999999998888887664 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00012      0.19      63      81 ..     188     206 ..     156     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                 T-EEEEEEEETHHHHHHHH CS
    Lipase_3  63 peysivvtGHSLGgalAlL 81 
                 p  +iv+ GHSLG a+A+ 
  CCE28812.1 188 PASRIVLFGHSLGTAVATG 206
                 5789*************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2746.98
//
Query:       CCE28813.1  [L=849]
Description: uncharacterized protein CPUR_02502 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.095   12.1   0.0       0.21   10.9   0.0    1.5  1  NMT1_3    NMT1-like family


Domain annotation for each model (and alignments):
>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.2e-05      0.21      92     153 ..     451     507 ..     446     521 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.2e-05
      NMT1_3  92 vfqlvvskdsgigsiadlkgkrvsvGpegsGtegsarailealglsekdlklleelgygesa 153
                 v++l+++++s+  ++ dl  krv+vG+++sG+ +++ +i++ l++++++  +    ++g+sa
  CCE28813.1 451 VIALLAQRASKDAELRDLM-KRVAVGEAKSGELAQFQKIIDQLNVEYRQKGG----QQGPSA 507
                 5778899999999999997.59***********************9877554....334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.44
# Mc/sec: 5752.79
//
Query:       CCE28814.1  [L=599]
Description: uncharacterized protein CPUR_02503 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-28   97.3   0.0    1.4e-27   96.6   0.0    1.4  1  TLD       TLD
    5.1e-15   56.2   1.7    1.4e-14   54.9   1.7    1.8  1  DUF1773   Domain of unknown function


Domain annotation for each model (and alignments):
>> TLD  TLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0   1.6e-31   1.4e-27       1     139 []     354     548 ..     354     548 .. 0.94

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 1.6e-31
         TLD   1 llyssskdgsslstllekie.nkgptllli.............................kdekkyifGaflsqpwkssnkkfygdsesflfslspkfkv 69 
                 llys s+ g+s+ ++ +k+  +++ptlll+                             ++++ ++fG+f+ +pwk+++k+++gdse++lf+l+p ++v
  CCE28814.1 354 LLYSGSNAGFSIGSFESKVFnWRAPTLLLVsgsilpdapsggqeksfaetlptkrfrngTKTGRVTFGVFVREPWKHTHKECFGDSETVLFQLEPVHDV 452
                 79****************99899***********************************9566669********************************** PP

         TLD  70 ykstgknkaylntssdg.....lgfGggqp...............kfsLwidsslekgtsrhs.....etfengllsg.aseerfkikdiEVWglg 139
                 + ++  n+ y+  ++       l+fG ++p               ++sL +++s+e+g+ +h+     ++f ++  +  ++++rf+i+++EVWg+g
  CCE28814.1 453 FPASTMNTDYVAFTKPPgnppqLSFGAPHPkprkssradahnslgAVSLLLNDSFEFGVLNHDytsrgGAFRTSVSRRyDFQDRFEIDQLEVWGCG 548
                 *******999999993356788*****************************************9899888988888889***************96 PP

>> DUF1773  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   1.7   1.5e-18   1.4e-14       1      58 []     292     345 ..     292     345 .. 0.95

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 1.5e-18
     DUF1773   1 hflfsknldfskrksgysassvpflngeepedeePLLpdigsilDinvLSQlsfFLpG 58 
                 hflfsknld+sk++  ++++s++ ++ ++p +  PLL d+g+il+ ++LSQ+s FLpG
  CCE28814.1 292 HFLFSKNLDLSKHR--KDSTSKEIDPLCNPAQ--PLLSDKGEILNDHRLSQISLFLPG 345
                 9*************..88889999999***66..9**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 4079.08
//
Query:       CCE28815.1  [L=211]
Description: uncharacterized protein CPUR_02504 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-22   78.5   1.3    5.1e-22   77.8   1.3    1.3  1  HIG_1_N       Hypoxia induced protein conserved region
     0.0047   17.0   1.9     0.0076   16.4   1.9    1.5  1  MAS20         MAS20 protein import receptor
  ------ inclusion threshold ------
       0.06   13.4   5.4      0.054   13.5   3.9    1.6  2  DUF2514       Protein of unknown function (DUF2514)
       0.13   10.9   0.0       0.16   10.6   0.0    1.1  1  O-ag_pol_Wzy  O-antigen polysaccharide polymerase Wzy


Domain annotation for each model (and alignments):
>> HIG_1_N  Hypoxia induced protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   1.3   1.1e-25   5.1e-22       1      52 []      39      90 ..      39      90 .. 0.99

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 1.1e-25
     HIG_1_N  1 eeplvpiGilatvgalvrglrsmkrgdskqsnrlmraRiaaQaftvlalvaG 52
                eepl+p+G+++tv a + ++r+++rgds+q+n ++raRiaaQ+ftv+a+vaG
  CCE28815.1 39 EEPLIPLGMGLTVFAFINAYRAIRRGDSRQANIMFRARIAAQGFTVVAVVAG 90
                79************************************************98 PP

>> MAS20  MAS20 protein import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.9   1.7e-06    0.0076       2      63 ..      81     144 ..      80     187 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.7e-06
       MAS20   2 gvaaaaflgYcvYFDrkRrsdpefkkklrerrkkqakaakeeeeaekaekkk...kealeeakee 63 
                 g +++a+++  +Y+D+ R++++e +k l+e+r +++k++k  +e e++++++   kea++e k+ 
  CCE28815.1  81 GFTVVAVVAGGFYYDQDRKKSQELRK-LQEERDAEEKRQKWIRELEARDREDklmKEAIRERKKP 144
                 56788999999************986.77777777767666666665555553555454444443 PP

>> DUF2514  Protein of unknown function (DUF2514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.9   1.2e-05     0.054      11      84 ..      85     159 ..      75     166 .. 0.79
   2 ?   -1.7   0.1      0.57   2.5e+03     111     127 ..     158     174 ..     148     177 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
     DUF2514  11 vaalvwG.fahGrskeeaewekrwadrdaedsqakviaeeaaReeeqrrkaaaekavkdaqekaaaAradavgaa 84 
                 va++  G +   ++k+++e +k +++rdae++++k i e +aR++e +  + a + +k+ +   +aA +   +a+
  CCE28815.1  85 VAVVAGGfYYDQDRKKSQELRKLQEERDAEEKRQKWIRELEARDREDKLMKEAIRERKKPKTDYSAAVESLKKAE 159
                 2233346779999*******************************9998776666667888888887777666665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.57
     DUF2514 111 aargkaaaraavvLadl 127
                 a++ + a++aa vLa +
  CCE28815.1 158 AEGREPATNAAGVLAKM 174
                 45556688888888876 PP

>> O-ag_pol_Wzy  O-antigen polysaccharide polymerase Wzy
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.6e-05      0.16     246     304 ..      32      87 ..      23     105 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.6e-05
  O-ag_pol_Wzy 246 e.kkkikkkellliviilpilllfmqlvnyiRngnevssssffellisffyeqgvsfnvl 304
                   +  +kik  e l+ +++  +++ f+++++ iR g++    + + ++++ + +qg+++  +
    CCE28815.1  32 KfFRKIKE-EPLIPLGMGLTVFAFINAYRAIRRGDS---RQANIMFRARIAAQGFTVVAV 87 
                   44689995.666666667899***************...789**************8644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1803  (0.100563); expected 358.6 (0.02)
Passed bias filter:                      883  (0.0492498); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1510.95
//
Query:       CCE28816.1  [L=966]
Description: uncharacterized protein CPUR_02505 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-10   38.7   7.6    1.1e-09   37.9   7.6    1.4  1  ZZ           Zinc finger, ZZ type
    2.3e-09   36.1   7.5    3.9e-05   22.9   0.2    3.4  3  EF-hand_1    EF hand
    5.7e-08   33.1   9.6    1.3e-05   25.6   3.9    3.3  3  EF-hand_7    EF-hand domain pair
    8.2e-07   28.5   5.4    0.00092   19.0   0.2    3.0  3  EF-hand_6    EF-hand domain
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.037   14.0   0.0    1.7  1  EF-hand_4    Cytoskeletal-regulatory complex EF hand
       0.16   11.8   4.7       0.63    9.9   0.2    2.7  2  EF-hand_8    EF-hand domain pair


Domain annotation for each model (and alignments):
>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   7.6   3.8e-13   1.1e-09       2      37 ..     145     180 ..     144     187 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 3.8e-13
                 SS-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH CS
          ZZ   2 hkkytCdgCseapligvRyhclrcsdYDLCqsCfst 37 
                 h + +C+ C+  p+ gvRy+c+ c d+DLC  C+ +
  CCE28816.1 145 HRGCQCNSCGMVPIRGVRYRCANCADFDLCETCEAQ 180
                 77889****************************998 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.8   2.7e-06     0.008       3      26 ..     290     313 ..     290     314 .. 0.93
   2 !   22.9   0.2   1.3e-08   3.9e-05       2      28 ..     322     348 ..     321     349 .. 0.94
   3 ?   -1.2   0.0      0.65     2e+03      15      28 ..     933     946 ..     933     947 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.7e-06
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 +++F+ +D ++d +I f Ef++ l
  CCE28816.1 290 DRMFSFYDSNHDDFIGFAEFLNGL 313
                 68******************9876 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 lk++F+ +D DgdG++++ +f++++++
  CCE28816.1 322 LKKVFEGYDIDGDGYVNRRDFLRMFRA 348
                 89**********************986 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.65
                 SEEEHHHHHHHHHH CS
   EF-hand_1  15 GkIdfeEfkellkk 28 
                 G+++f Ef ++ k+
  CCE28816.1 933 GRLNFVEFEKIYKS 946
                 899*****999876 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   3.9   4.2e-09   1.3e-05       5      71 .]     289     347 ..     286     347 .. 0.87
   2 !   20.0   0.3   2.4e-07   0.00071       2      31 ..     320     349 ..     319     380 .. 0.79
   3 ?   -0.9   0.0       0.8   2.4e+03      59      71 .]     933     945 ..     887     945 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4.2e-09
   EF-hand_7   5 kea.FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 +++ F  +D+++d ++  +e+l          g    +++++l+++f+  D d+dG++++ +Fl+++r
  CCE28816.1 289 HDRmFSFYDSNHDDFIGFAEFL---N------GLSYRKRKDKLKKVFEGYDIDGDGYVNRRDFLRMFR 347
                 5565****************55...5......6677778899**********************9986 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 2.4e-07
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrki 31 
                 +klk +F+ +D dgdgy++++++lr++r+ 
  CCE28816.1 320 DKLKKVFEGYDIDGDGYVNRRDFLRMFRAY 349
                 79********************99988864 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.8
   EF-hand_7  59 GvisfdEFlklyr 71 
                 G+++f EF+k+y+
  CCE28816.1 933 GRLNFVEFEKIYK 945
                 899******9996 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.6   0.00015      0.46       4      27 ..     291     314 ..     289     316 .. 0.92
   2 !   19.0   0.2   3.1e-07   0.00092       1      27 [.     321     347 ..     321     353 .. 0.93
   3 ?   -3.5   0.0       5.1   1.5e+04      15      27 ..     933     945 ..     933     947 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 + F  +D ++d +i ++E+ + l+
  CCE28816.1 291 RMFSFYDSNHDDFIGFAEFLNGLS 314
                 68*****************99886 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 3.1e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 +l+++F+ +D dgdG++++ ++ +++r
  CCE28816.1 321 KLKKVFEGYDIDGDGYVNRRDFLRMFR 347
                 589**********************99 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5.1
   EF-hand_6  15 GkidaeElrkalr 27 
                 G +++ E+ k+++
  CCE28816.1 933 GRLNFVEFEKIYK 945
                 788999**99997 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.2e-05     0.037      39     101 ..     316     379 ..     297     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
   EF-hand_4  39 kleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpeska.hlvq 101
                 + ++dkl+k+++  did dg ++  +f  + r  + l  + +kd+ + l + l++++ a +lv+
  CCE28816.1 316 RKRKDKLKKVFEGYDIDGDGYVNRRDFLRMFRAYYVLYKQMHKDILDGLEDQLLASTEAqQLVS 379
                 55799*********************************************99988776514555 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.7      0.04   1.2e+02      31      50 ..     292     311 ..     289     314 .. 0.91
   2 ?    9.9   0.2   0.00021      0.63      33      53 ..     327     347 ..     319     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.04
   EF-hand_8  31 lfrefDtdgdGkisfeEFcv 50 
                 +f+  D ++d  i+f EF++
  CCE28816.1 292 MFSFYDSNHDDFIGFAEFLN 311
                 9*****************97 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00021
   EF-hand_8  33 refDtdgdGkisfeEFcvlle 53 
                    D+dgdG+++  +F+ ++ 
  CCE28816.1 327 EGYDIDGDGYVNRRDFLRMFR 347
                 556**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (966 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1191  (0.0664287); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.93u 0.29s 00:00:01.22 Elapsed: 00:00:00.47
# Mc/sec: 6189.31
//
Query:       CCE28817.1  [L=509]
Description: uncharacterized protein CPUR_02506 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3568.74
//
Query:       CCE28818.1  [L=273]
Description: related to CCC1 protein (involved in calcium homeostasis) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-62  209.2   4.1    7.4e-62  209.0   4.1    1.0  1  VIT1      VIT family


Domain annotation for each model (and alignments):
>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.0   4.1   4.1e-66   7.4e-62       1     215 []      50     266 ..      50     266 .. 0.92

  Alignments for each domain:
  == domain 1  score: 209.0 bits;  conditional E-value: 4.1e-66
        VIT1   1 lrdavlGanDGLvspfalvaGlsaaslgssktvllaGlaellAGaiSMgiGeYlsvkserdlekaerkreeeeleedpeegeaeel.aeilearglsee 98 
                 lrd+++G++DGL++pfal+aGls  slgs+k+v+++Glael++G iSMg+G+Yl++ +erd+++++ +++ ++ ++   e+ ++e+ + +l ++gls++
  CCE28818.1  50 LRDIIIGFSDGLTVPFALTAGLS--SLGSTKLVIMGGLAELFSGMISMGLGAYLAAATERDTFTSQASMQHAHNATRGVEERRAEIySILLDRYGLSRK 146
                 79*********************..******************************************998888888776666799945557899***** PP

        VIT1  99 laqevaaellknpdallelmlreelg..psaseelasplkaAlssalsfliGgliPllpylfvesvglalvvsiavtllalllfGavkallt..gssk. 192
                  ++ +++el ++ +++ ++ + ++ g     + +  +++ ++l++++s+++GgliP++py+++e+v +alvvs+avt+++ll+fG+vk+++   + +  
  CCE28818.1 147 SVKPLVDELCADSERWARFKTDFGCGggE--EPSVHRAWVSGLTMGVSYFLGGLIPMIPYFVLENVANALVVSVAVTVVVLLAFGYVKNYVAirNHRAg 243
                 **********************9998532..33446899*****************************************************9955556 PP

        VIT1 193 lvsalrmlliGalAaaaayligk 215
                 l++a ++l+iG+lAa+ +y+i+k
  CCE28818.1 244 LWGAAQTLVIGVLAAGTSYVIVK 266
                 *********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1976.67
//
Query:       CCE28819.1  [L=257]
Description: related to translin-associated protein X [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-62  208.8   0.0    9.8e-62  208.6   0.0    1.1  1  Translin    Translin family
  ------ inclusion threshold ------
       0.03   13.6   0.0      0.039   13.3   0.0    1.2  1  DUF3689     Protein of unknown function (DUF3689)
      0.037   14.5   0.4      0.096   13.2   0.1    1.8  2  NPV_P10     Nucleopolyhedrovirus P10 protein
      0.064   13.3   0.1       0.25   11.4   0.1    1.9  2  Laminin_II  Laminin Domain II


Domain annotation for each model (and alignments):
>> Translin  Translin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.6   0.0   2.2e-65   9.8e-62       1     205 []      42     236 ..      42     236 .. 0.97

  Alignments for each domain:
  == domain 1  score: 208.6 bits;  conditional E-value: 2.2e-65
                 HHHHHHHHHHHHHHHHHHHHHHHHHTTGSSTTTHHHHHHH.HHHHHHHHHHHTTSS..........GHHHHGGGTH.HHHHHHHHHHHHHHHHHSS--- CS
    Translin   1 drreriikasrditaaskkiifllhrvrsekteaqdkkakikkeakeklkeiakllasvaeelqgsnayrYqrqisgglqeliealsfahYletqtLit 99 
                 drreri+kasrd+ta+skkiif+l+rv+   + +q+ +++++k+++++l+ei+++l+++a++l+++n+yrY + ++ +l+el+ealsf +Yl++q+Li+
  CCE28819.1  42 DRRERIVKASRDVTALSKKIIFALQRVK---HLNQKLPPSTQKDISTRLSEITTHLEKIAPDLTSINRYRYTWPLR-CLEELVEALSFEYYLRHQQLIS 136
                 9***************************...778999***99*********************************9.********************** PP

                 HHHHHHHTT.---SSSSSS---HHHHHHHHHHHHHHHHHHHHHHHCTT--S....HHHHHHHHHHHHHHHHHTS----HH...HHHHHTTHHHHHHHHH CS
    Translin 100 leevqkilealkeneedafhltpedYllGlfdLtgELmRfainsvalgdke...ekplqilkflrelragfellnlkndsakdlrkKldvlkqsvkKvE 195
                  e +q+ l+a       +++ltp+dY++G+fdL+gELmRfa+ ++a+++++    + ++il+++++l ++fell      +kd+r K+++ +qsv+KvE
  CCE28819.1 137 PEAAQAFLPA-------DMQLTPHDYMFGIFDLFGELMRFATVTMAQNGAMlcgADGRSILADIQQLGCAFELLREIP--TKDYRCKMEAARQSVQKVE 226
                 ********96.......89******************************99999999******************994..58***************** PP

                 HHHHHHHHHT CS
    Translin 196 dvvYdlsvRg 205
                 ++ Y+l+vRg
  CCE28819.1 227 KLGYGLAVRG 236
                 *********8 PP

>> DUF3689  Protein of unknown function (DUF3689)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.7e-06     0.039     131     203 ..     111     183 ..      34     194 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.7e-06
     DUF3689 131 wlaravEsflRgatsyadqlfllrrglle.hlveellese..lkskevlQslFDLLgelikfnvealkrfekllnt 203
                 w  r++E  +   +      +l +++l+     +  l  +  l++++ + ++FDL gel++f + ++ +   +l+ 
  CCE28819.1 111 WPLRCLEELVEALSF---EYYLRHQQLISpEAAQAFLPADmqLTPHDYMFGIFDLFGELMRFATVTMAQNGAMLCG 183
                 555666665554444...33444444443134444554332277889999*****************999888875 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.1e-05     0.096      11      62 ..      52     105 ..      47     107 .. 0.82
   2 ?   -4.0   0.0         4   1.8e+04      21      30 ..     216     225 ..     209     227 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.1e-05
     NPV_P10  11 adikavddkVdalqqqvddvqenlpdvt..elnekLdaqsaqLaeletkvenIq 62 
                  d++a+++k+    q+v++++++lp  t  +++++L ++++ L+++   +++I+
  CCE28819.1  52 RDVTALSKKIIFALQRVKHLNQKLPPSTqkDISTRLSEITTHLEKIAPDLTSIN 105
                 69*******9988899********986522588888888888888888888776 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4
     NPV_P10  21 dalqqqvddv 30 
                 +a  q+v++v
  CCE28819.1 216 EAARQSVQKV 225
                 3334444444 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   5.6e-05      0.25      45      96 ..      38      91 ..      24     104 .. 0.84
   2 ?   -1.1   0.0      0.38   1.7e+03      52      66 ..     213     227 ..     201     235 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.6e-05
                XXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH.....HHHHHHHHH CS
  Laminin_II 45 ekvkdankairdArrsvkkLeklapqLldklkelkqleeasss..lsdniseik 96
                ++ +d  + i+ A+r v  L k++   l+++k+l+q+ ++s    +s  +sei 
  CCE28819.1 38 DEHHDRRERIVKASRDVTALSKKIIFALQRVKHLNQKLPPSTQkdISTRLSEIT 91
                34568899999***************************9988789**9999995 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.38
                 XXXXXXXXXXXXX-- CS
  Laminin_II  52 kairdArrsvkkLek 66 
                   ++ Ar+sv+k+ek
  CCE28819.1 213 CKMEAARQSVQKVEK 227
                 455667777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1864.40
//
Query:       CCE28820.1  [L=440]
Description: related to mannosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-73  246.7   9.9    4.8e-73  246.2   9.9    1.2  1  Mannosyl_trans  Mannosyltransferase (PIG-M)


Domain annotation for each model (and alignments):
>> Mannosyl_trans  Mannosyltransferase (PIG-M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.2   9.9   2.7e-77   4.8e-73       1     259 []     131     413 ..     131     413 .. 0.92

  Alignments for each domain:
  == domain 1  score: 246.2 bits;  conditional E-value: 2.7e-77
  Mannosyl_trans   1 istrGnadsivailvlltlyllekrkiasaalvlGlavhlkiYPliyalalalslskkkeq...............svaakllrllkiavlvlvl 80 
                     +strG+a+ ++++l ++ l+ +e + ++ a+ vlGl vh+kiYP+i+a a++ ++ +++                 ++ a+++  ++++ +++v+
      CCE28820.1 131 MSTRGSAEGLLGVLTVALLWAVEGQCFVLAGGVLGLGVHFKIYPFIWAPAILWWMDRENLGgsrtgraacayddarGICARVMGFVSWERIKFVV 225
                     59*************************************************9999665544578889998888888888888899********** PP

  Mannosyl_trans  81 valisllaltlllyklYGqefleeaylYhlvrkDhrhnfslyflllYleeaskva..assil...kllaflPqlvl.lllvslkf.rrnlafalf 168
                     v+l +++ l++l+y +YG+ f+++++ +h++r Dhrhnfs+y+ llYl +a + a  +ss++   + laf+Pql+l +++++l + +++la+ ++
      CCE28820.1 226 VSLGTFMGLNVLMYWIYGMPFIQHTFSHHMTRLDHRHNFSPYNTLLYLRSAANDAssPSSMMpriEALAFVPQLLLsCVVIPLVLaKKDLATSMM 320
                     *************************************************9988775455554666999******9945666999989******** PP

  Mannosyl_trans 169 vqtfvfvtfnkvctsqYfvWylvlLplllskvkllswk.kalvllllWlatqalWllaayllefegkntfll.lflasllfllanvviLkqll 259
                     +qtf+fvtfnkvctsqYf+Wy+v+Lpl+l+++ ll     +l+ l+lWl++q+ Wl ++y+lef g++tf++ l+ +sl+f+++n++iL  ++
      CCE28820.1 321 AQTFAFVTFNKVCTSQYFLWYMVFLPLYLPSSSLLRNPlVGLSALVLWLVSQSAWLHQGYQLEFLGQSTFFPgLWASSLVFFVVNCWILGIVI 413
                     *********************************9875426899****************************99****************8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 3082.45
//
Query:       CCE28821.1  [L=608]
Description: uncharacterized protein CPUR_02510 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.011   15.5   0.1       0.08   12.8   0.1    2.5  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   4.5e-06      0.08       2      47 ..     131     203 ..     130     204 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.5e-06
  F-box-like   2 srLPdEiLlqIF.............................syLppsdLlrlalVCrrWrrvaldtplLWrrlvl 47 
                 + LP E+   I+                             ++   ++L+ lalV   Wr+++   ++L+r++ l
  CCE28821.1 131 DELPIEVHEAILdhlfgycisptsssamrvsnltkswssalRHCRRRELADLALVNPIWRDLV--QQRLYRHIKL 203
                 578888888888888888888888888777777777764443445678***************..669****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4451.14
//
Query:       CCE28822.1  [L=493]
Description: probable alkaline protease (oryzin) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-33  115.5  12.2      4e-33  114.9  12.2    1.2  1  Peptidase_S8  Subtilase family
  ------ inclusion threshold ------
      0.052   14.2   0.1       0.12   13.1   0.1    1.7  1  Inhibitor_I9  Peptidase inhibitor I9


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9  12.2   4.5e-37     4e-33       1     281 [.     171     409 ..     171     429 .. 0.82

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 4.5e-37
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   g+g++v v+DtGv  sh +++    g +++       ga+f++   +   +++a+ddng    HG+hvAG++a          gva  a+++++kvl
    CCE28822.1 171 GEGIMVYVVDTGVRISHEEFQ----GRASY-------GANFVDVAPDGQLNSNASDDNG----HGSHVAGTIASI------TYGVAKRASLTAIKVL 246
                   79*******************....44444.......6777777777778888999999....**********99......99************** PP

                   STTSB-HH..HHHHHHHHHHHHCT-S.......EEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTC CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaaedkvd.......vinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknv 187
                   + +g+  +  ++++++++ +++d ++       v+n+slg+++s+  +       a++  v k g++ v++aGN+        + ++  +p+++ n+
    CCE28822.1 247 NSKGEGPN--SGILAGLQFVLQDVARknltgraVMNLSLGGGFSQAMNH------ALQSVV-KAGIVCVAAAGNDD-------KDATNMSPASAPNA 327
                   88888776..66777666666655555666999*******777777666......788899.99************.......778889999999** PP

                   EEEEEES.TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS CS
                   xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 188 itvgayt.tegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntA 281
                   itvga++ + +  a+fS+ G s+      di apG+ni+s     +n+      +   sGTSmAsP++ag aA l+     ++++t  aa++ +A
    CCE28822.1 328 ITVGAINaKTDAKASFSNFGASV------DIYAPGVNILSVGHLSDND------TRILSGTSMASPHIAGLAAYLMRLRH-IKNATQVAAIEESA 409
                   *******766778********99......6*******77766666633......7899******************7666.55555555666666 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.3e-05      0.12       1      81 [.      49     133 ..      49     134 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
                   EEEEEE-TTS-HHHHHHHHHHHHH.....HHHHTT.....--EEEEEEESS.SSSEEEEEE-GGGHHHHHTSTTEEEEEEEEEEEE CS
  Inhibitor_I9   1 vYIVtfkeaakaakkassheswhqsl.lksvlkge...dsakagilysYki.lfnGfavklteeqaeklrkrpeVesVepDqsvrl 81 
                   +YIV+ ++  ++ + +++ +   + +  k++l ++   +++  +   s++  ++++ a   ++  +  + +  eV++Ve Dq +++
    CCE28822.1  49 RYIVVYNNTFSSNA-IQAKMAFFSTTiKKRNLNKRsldGRQLSTETMSFRMnKWHAMALDADDGLIADINRANEVAYVEADQWMHT 133
                   59999999666655.7777777775536665555557778999999999999******************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.35
# Mc/sec: 4177.72
//
Query:       CCE28823.1  [L=464]
Description: probable farnesyl-diphosphate farnesyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-38  132.6   0.0    2.4e-38  132.2   0.0    1.2  1  SQS_PSY   Squalene/phytoene synthase
  ------ inclusion threshold ------
        0.1   13.3   0.1        1.9    9.2   0.0    2.6  2  Ku_C      Ku70/Ku80 C-terminal arm


Domain annotation for each model (and alignments):
>> SQS_PSY  Squalene/phytoene synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2   0.0   2.7e-42   2.4e-38       4     262 ..      48     323 ..      45     324 .. 0.90

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 2.7e-42
                 H-HHHHHHHTTS-HHHHHHHHHHHHHHHHHT-.-----.........------------..........---------THHHHHHHHHHHT.--HHHHH CS
     SQS_PSY   4 asksfylaslllppelRdalgalYafcreaddlvDdvseplqara.rldwwrdavdavya........edklkpprepvlralaqlirtyk.lpkelll 92 
                  s+sf+++++ l+pel  +++++Y++ r +d+++Dd + pl+++   l++++++++   +        +++l ++++ v ++l++  ++y+ ++k++  
  CCE28823.1  48 TSRSFAVVIQELNPELLVPIALFYLVLRGLDTIEDDMTIPLEKKIpLLRHFHENMEIDGWqfhesnekDKELLEKFDVVITELKKIKPQYYaIIKDITV 146
                 59*******************************************9999****9994444888776554899****************9999******* PP

                 HHHHHTS--SS-.......--SHHHHHHHHHHHHHHHHHHHHHHH-S.....S-H.HHHHHHHHHHHHHHHHHHHHT---SHHHHTT..S-HHHHHHHT CS
     SQS_PSY  93 eliegmeadleftr.....yetlddLeeYcyrvagvVgelclrllgar....rsd.ralaeaarrlGkalQltnilRdvpeDaergrvyLPadvlkefg 181
                 ++ +gm+  +++++     +++++d+e Yc++vag Vge +++l+  +      + ++   + +++G++lQ tni+Rd++eD + gr + P++++ ++ 
  CCE28823.1 147 KMGNGMADYAQNDDmikngVQNIEDYELYCHYVAGLVGEGLTNLFVESelgnP-KlAERPSLTESMGQFLQKTNIIRDIHEDWQDGRRWYPKEIWSRHV 244
                 ********9999445555599************************99655431.1333345679*********************************** PP

                 --HHHHHHT-.-SHHHHHHHHHHHHHHHHHHHHHHHTGGGS.-HHHHHHHHHHHHHHHHHHHHHHHTTT-TTT------HH CS
     SQS_PSY 182 vseedllrkgvrsaelrallrrlaerArelldearellkqlpdrrarpalllavalyrailerieaadydvlsrrvklsll 262
                 ++ ed+++ +  ++++ +++ +++  A ++ +e+  ++++ +++ +  +++++  ++ a +e + ++++ vl+r vk++++
  CCE28823.1 245 DKWEDMFDPK-YESQALNCVSDMILDALKHVEECLFYMAAMREQSVFNFVAIPQGMAIAAMESMFRNPD-VLKRNVKITKG 323
                 *******988.7888*****************************************************9.79999*99986 PP

>> Ku_C  Ku70/Ku80 C-terminal arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.11   9.7e+02      49      65 ..     242     258 ..     224     272 .. 0.84
   2 ?    9.2   0.0   0.00021       1.9      31      71 ..     352     391 ..     341     407 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.11
                 ...HHHHHHHHHHHHH. CS
        Ku_C  49 slleewkelfeleeedk 65 
                  ++++w+++f++++e +
  CCE28823.1 242 RHVDKWEDMFDPKYESQ 258
                 46999999999998764 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00021
                 ---SS--HHHHHHHHH-....HHHHHHHHHHHHH.....HHHHH CS
        Ku_C  31 eledktlpkyeaidkragslleewkelfeleeedke...kkkek 71 
                 + +d ++p+y +i+ r+ + +e++ e+++++++ k+   +   +
  CCE28823.1 352 KKNDPKDPNYLNISVRC-AKIEQFIETLYPTQDPKQlasQ---N 391
                 6789999**********.999**********988664431...2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3240.46
//
Query:       CCE28824.1  [L=274]
Description: related to triacylglycerol lipase 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-24   84.6   0.0    1.1e-23   84.2   0.0    1.1  1  Abhydrolase_3  alpha/beta hydrolase fold
    8.9e-18   64.3   0.0    2.1e-17   63.0   0.0    1.6  1  Say1_Mug180    Steryl acetyl hydrolase
     0.0078   15.8   0.0      0.013   15.0   0.0    1.3  1  DUF2974        Protein of unknown function (DUF2974)
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.025   14.3   0.0    1.1  1  PGAP1          PGAP1-like protein
      0.039   13.4   0.0      0.074   12.5   0.0    1.4  1  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0     3e-27   1.1e-23       1     208 [.      29     245 ..      29     247 .. 0.81

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 3e-27
                    EEEE--STTTS--TTTT.....HHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldth.....dalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalr 91 
                    l+++HGGGf++ +++ h     + + ++ +++    ++ +dY l+P++++P+++ +a++ lr+l ++    +  ps+i++aGdS GGnl++ v+  
     CCE28824.1  29 LIWYHGGGFTMPGPEGHfkflmNFIKTRPSNKPSLSILFPDYSLSPQAQYPTQLTQAVETLRYLITT---TKRSPSKIMIAGDSSGGNLVMGVLSH 121
                    68***************87776666677889999********************************9...5789********************77 PP

                    HHHTT---.........EEEEEEESE-SSTSSTTSHHHHHCHHT.TTSSSSCHHHHHHHHHHHSS..GGGGGSTTTSGGGCS-.SST--..-EEEE CS
  Abhydrolase_3  92 ardegepk.........vagqvliyPvtdlertesesikkaeel.adgplltraaldlfwrlylp..eadrddplaspllaed.lsglp..ptlvv 172
                    ++  ++ +         +a+ +++ P++ l+++  + i     +  ++++ + + +++  +++ +   +  +dp ++p    + ++g+p  +++v+
     CCE28824.1 122 LKHPHK-AideltltepLAAAMMMGPWLALNDP--DPILAG--YsGRDSMTELSLVRWSRDYMGSatPDPYTDPSCAPA---EwFRGVPvhKMFVM 209
                    777642.235778889999999999*9977444..555333..335557777888887666654333444555555555...3488866559**** PP

                    EETT-TTHHHHHHHHHHHHHTT--EEEEEETTEETT CS
  Abhydrolase_3 173 vaefDplrdegeayaerlraagvevelieyegmvHg 208
                    v+ ++ l     ++ ++l+a   +ve+ + +++vH+
     CCE28824.1 210 VGSNEYLLPCIDDFVKKLEAGYGPVEYYVADKEVHD 245
                    ***********************************7 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0     6e-21   2.1e-17     118     327 ..      22     228 ..      15     259 .. 0.71

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 6e-21
  Say1_Mug180 118 dPkvDpvllylHGGgfalklipvtlvfLsnlrklfpdm....ailvsDYtvtaakdqskkYplqvleslavydylvksk..gfknvvvlGdSaGGnlv 209
                  dP+ + vl+++HGGgf ++     + fL n  k+ p+     +il +DY++      + +Yp q+ +++    yl+ ++  +  ++++ GdS+GGnlv
   CCE28824.1  22 DPNAEHVLIWYHGGGFTMPGPEGHFKFLMNFIKTRPSNkpslSILFPDYSLSP----QAQYPTQLTQAVETLRYLITTTkrSPSKIMIAGDSSGGNLV 115
                  899***************************999887322444********988....789***************9664225679************* PP

  Say1_Mug180 210 Lslllklsklnkvv......lPkk.aiaiSPWlnltildekekeylkasdklDvlclkglelfgklyvnnrepeeelktdefvnieknfdievWseil 300
                  + +l +l++ +k +       P   a+++ PWl l + d      l +  + D+++  +l +  + y++        + d++++    +    W + +
   CCE28824.1 116 MGVLSHLKHPHKAIdeltltEPLAaAMMMGPWLALNDPD----PILAGYSGRDSMTELSLVRWSRDYMGS------ATPDPYTD--PSCAPAEWFRGV 201
                  ******999999753322223544145678888776332....344445566777777777777777777......23333332..223444566666 PP

  Say1_Mug180 301 ekckllityGddEilkdqikllidkis 327
                     k++++ G++E l   i  +++k+ 
   CCE28824.1 202 PVHKMFVMVGSNEYLLPCIDDFVKKLE 228
                  667777777777777777777777776 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.7e-06     0.013      61     109 ..      78     126 ..      74     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.7e-06
     DUF2974  61 frsevpaqesAlkYlnkileesegkiylgGhSkGGnlAvyaamnaeddl 109
                 +  + ++  + l+Yl + +++s+ ki+++G S GGnl + ++ ++++ +
  CCE28824.1  78 YPTQLTQAVETLRYLITTTKRSPSKIMIAGDSSGGNLVMGVLSHLKHPH 126
                 555666677889*************************988888766655 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.9e-06     0.025      65     134 ..      72     143 ..      66     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.9e-06
       PGAP1  65 lldqaey...lndaIkyIlslysssekeptsviliGHSmGGivaraaltlknyikqsvntiltlasPhalppl 134
                 l+ qa+y   l +a++++  l +++++ p+++++ G S GG +   +l + ++ ++++++ ltl  P+a++ +
  CCE28824.1  72 LSPQAQYptqLTQAVETLRYLITTTKRSPSKIMIAGDSSGGNLVMGVLSHLKHPHKAIDE-LTLTEPLAAAMM 143
                 555666655578899998999999**********************************99.589999888765 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.1e-05     0.074      46      86 ..      83     123 ..      78     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
                   HHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-G CS
  Peptidase_S9  46 dDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrp 86 
                   ++ ++ +++l+++   ++++++i G S GG l++ +l + +
    CCE28824.1  83 TQAVETLRYLITTTKRSPSKIMIAGDSSGGNLVMGVLSHLK 123
                   5678999**************************99998544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2019.92
//
Query:       CCE28825.1  [L=356]
Description: related to triacylglycerol lipase 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-21   77.4   0.0      2e-21   76.8   0.0    1.2  1  Abhydrolase_3  alpha/beta hydrolase fold
    2.9e-16   59.3   0.0    4.6e-16   58.6   0.0    1.3  1  Say1_Mug180    Steryl acetyl hydrolase
     0.0027   17.4   0.0     0.0041   16.9   0.0    1.2  1  PGAP1          PGAP1-like protein
     0.0028   17.2   0.0     0.0043   16.6   0.0    1.2  1  DUF2974        Protein of unknown function (DUF2974)
  ------ inclusion threshold ------
      0.039   13.4   0.0      0.075   12.5   0.0    1.4  1  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   5.6e-25     2e-21       1     208 [.     111     327 ..     111     329 .. 0.84

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 5.6e-25
                    EEEE--STTTS--TTTT.....HHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldth.....dalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalr 91 
                    lv++HGGGf l  l+ h     + + ++ +++    ++  +Y lAP +++P+++ +a++ lr+l ++   ++  ps+i+++GdSaGGnl++av+  
     CCE28825.1 111 LVWYHGGGFGLPILNGHikflmRFIKSRGSRKPSLSILFLEYTLAPIAQYPTQLIQAVETLRYLITT---MKRSPSNIMIGGDSAGGNLVTAVLSH 203
                    79********99999996555444445567777889******************************9...7899********************98 PP

                    HHHTT---........EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSSGGGGG.STTTSGGGCS-SST--..-EEEEEETT CS
  Abhydrolase_3  92 ardegepk........vagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylpeadrd.dplaspllaedlsglp..ptlvvvaef 176
                    ++ ++e          +a+ +++ P+t l+r   ++  + e+++ g ++++a+l+ ++  y+++a+ d    as   ae ++g+p  ++lv+ ++ 
     CCE28825.1 204 LKHRHEAIdkltlsepLAAAIMMAPWTGLNR---PDVLL-ERYSGGDIVSKASLHRWAANYTGDATPDyYTDASRAPAEWFRGFPvnKILVLAGQD 295
                    88886333689999*9**********98833...45533.577888899******999999987777633344433334599977558******** PP

                    -TTHHHHHHHHHHHHHTT--EEEEEETTEETT CS
  Abhydrolase_3 177 DplrdegeayaerlraagvevelieyegmvHg 208
                    + l      + + l+a   + e+ + ++ vH+
     CCE28825.1 296 EYLLPAIDGFVKTLQAGYGPFEFYVADKKVHD 327
                    ***************************99997 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   1.3e-19   4.6e-16     118     280 ..     104     271 ..     100     335 .. 0.70

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 1.3e-19
  Say1_Mug180 118 dPkvDpvllylHGGgfalklipvtlvfL....snlrklfpdmailvsDYtvtaakdqskkYplqvleslavydylvksk..gfknvvvlGdSaGGnlv 209
                  dP+ + vl+++HGGgf l++    + fL    +  +   p+++il ++Yt+        +Yp q+ +++    yl+ ++  +  n+++ GdSaGGnlv
   CCE28825.1 104 DPDAEHVLVWYHGGGFGLPILNGHIKFLmrfiKSRGSRKPSLSILFLEYTLAP----IAQYPTQLIQAVETLRYLITTMkrSPSNIMIGGDSAGGNLV 197
                  8999**************986665555500005555667899********988....889***************98872246799999********* PP

  Say1_Mug180 210 Lslllklskln....kvvl..P.kkaiaiSPWlnltildekekeylkasdklDvlclkglelfgklyvnnrepeeelk 280
                    +l +l++ +    k +l  P   ai+++PW  l  + ++  e++    + D ++  +l++    y ++  p+++ +
   CCE28825.1 198 TAVLSHLKHRHeaidKLTLsePlAAAIMMAPWTGLN-RPDVLLERYS---GGDIVSKASLHRWAANYTGDATPDYYTD 271
                  999999876541111555522323578999**9877.5555555555...7788999999988888888854444433 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-06    0.0041      65     135 ..     164     226 ..     133     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
       PGAP1  65 lldqaeylndaIkyIlslysssekeptsviliGHSmGGivaraaltlknyikqsvntiltlasPhalppls 135
                 l        +a++++  l ++ ++ p+++++ G S GG +  a+l + +++++++++ ltl+ P+a++ + 
  CCE28825.1 164 L-------IQAVETLRYLITTMKRSPSNIMIGGDSAGGNLVTAVLSHLKHRHEAIDK-LTLSEPLAAAIMM 226
                 2.......3444444445577899********************************9.69****9998775 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.2e-06    0.0043      68     110 ..     167     209 ..     158     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.2e-06
     DUF2974  68 qesAlkYlnkileesegkiylgGhSkGGnlAvyaamnaeddlq 110
                   + l+Yl + +++s+ +i++gG S GGnl + ++ +++++++
  CCE28825.1 167 AVETLRYLITTMKRSPSNIMIGGDSAGGNLVTAVLSHLKHRHE 209
                 457799************************9999999887766 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.1e-05     0.075      49      85 ..     168     204 ..     162     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
                   HHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH- CS
  Peptidase_S9  49 iaaaealakegyvdserlaitGgSyGGyltgaalnqr 85 
                   ++ +++l+++   ++++++i G S+GG l+ a+l + 
    CCE28825.1 168 VETLRYLITTMKRSPSNIMIGGDSAGGNLVTAVLSHL 204
                   6778999999999*******************99855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2651.12
//
Query:       CCE28826.1  [L=358]
Description: uncharacterized protein CPUR_02515 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-20   71.7   0.0    1.1e-19   70.9   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.9e-11   44.5   0.0    5.8e-11   43.0   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    1.4e-09   38.4   0.0    4.2e-09   36.9   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
    5.1e-07   30.4   0.0    2.6e-06   28.1   0.0    2.2  1  Methyltransf_12  Methyltransferase domain
    0.00027   20.8   0.0     0.0091   15.8   0.0    2.4  2  Methyltransf_31  Methyltransferase domain
     0.0013   18.2   0.0     0.0024   17.3   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0014   18.2   0.0     0.0032   17.0   0.0    1.5  1  MTS              Methyltransferase small domain
     0.0031   16.9   0.0       0.57    9.5   0.0    2.2  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0031   17.6   0.1       0.23   11.6   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.031   14.0   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
      0.023   14.4   0.0      0.044   13.5   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
      0.024   14.1   0.0      0.049   13.1   0.0    1.5  1  Methyltransf_4   Putative methyltransferase
      0.042   13.1   0.0      0.076   12.3   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain
       0.13   12.0   0.0       0.23   11.2   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   8.3e-23   1.1e-19      15     160 ..     116     273 ..      98     276 .. 0.79

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 8.3e-23
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   e++ ++++fd+I++r+  + ++d+++l++
       CCE28826.1 116 FLAP-LKKDKihRVLDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWVPpNLCFEIDDAT--LEWTWDANHFDFIHMRYIVGGIEDWTALFK 206
                      4444.4444456*******************87779************98542222222222..36667999********************** PP

  Methyltransf_23 104 qiatllkpgGylllseplasl........kedrllldwlylvpagrhi..sffsarslkelleeaGl 160
                       ++++++pgG+++ +e+  +          e  l+ + ++ ++a++ +   +f  + l ++l eaG+
       CCE28826.1 207 EAYRCCAPGGWVESLEYEPEFcsddgsieLEPVLASYGELFREASKILkrPLFVKEKLPRALDEAGF 273
                      ****************876667777776545555666677788874445599999999999999998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   4.5e-14   5.8e-11       1      97 []     128     216 ..     128     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 4.5e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  ++++fD++++++ +  +  ed+ +++ke++r++
       CCE28826.1 128 VLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPP-------NLCFEIDDAtLEWTWDANHFDFIHMRYIVGGI--EDWTALFKEAYRCC 212
                      9******************99**********99887655.......558999999778999**********8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28826.1 213 APGG 216
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   3.3e-12   4.2e-09       1      94 [.     129     218 ..     129     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 3.3e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  +         f   da+ +     n fD++ ++  +  +ed+ +++ke++R++ pg
       CCE28826.1 129 LDVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWVPPNL-------CFEIDDATlEWTWDANHFDFIHMRYIVGGIEDWTALFKEAYRCCAPG 215
                      8**************9999**************9983333.......333344442358999******************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28826.1 216 GWV 218
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0     2e-09   2.6e-06       1      99 []     129     218 ..     129     218 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     l +++++ + +++++a+         +fD +++   +  ++d+ +++++++++++
       CCE28826.1 129 LDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPPNLCFEIDDATLEWTWDAN---------HFDFIHMRYIVGGIEDWTALFKEAYRCCA 213
                      8********************************66777777777766666666655.........7**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28826.1 214 PGGWV 218
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.1e-06    0.0091       5      38 ..     126     158 ..     122     160 .. 0.90
   2 ?    2.4   0.0     0.095   1.2e+02      55     107 ..     167     218 ..     164     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.1e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a v+G D s+
       CCE28826.1 126 HRVLDVGTGSGIWAIEFA-DQFPNASVIGTDLSP 158
                      68****************.669*********987 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.095
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      n+ Fe+ d++      +  + fD+i+ + ++  + d  + ++e+ r   pgg +
       CCE28826.1 167 NLCFEIDDATLeWT--WDANHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGGWV 218
                      55677777777333..8889***********************99999999965 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.9e-06    0.0024     162     194 ..     125     158 ..     105     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.9e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a ++  ++v+++D+ +
  CCE28826.1 125 IHRVLDVGTGSGIWAIEfADQFPNASVIGTDLSP 158
                 369*************7477999********987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.5e-06    0.0032      21      63 ..     114     156 ..     111     159 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.5e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v  +d 
  CCE28826.1 114 QLFLAPLKKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDL 156
                 689999****9999**********************9998886 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.01        13      49      81 ..     126     157 ..     115     162 .. 0.80
   2 !    9.5   0.0   0.00044      0.57     112     154 ..     181     223 ..     169     231 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.01
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++vlDv +G+g +a++++d+  +   v++ D++
       CCE28826.1 126 HRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLS 157
                      589***************99754.456666665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00044
                      TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 112 feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       + + fD++ + + +  + D +  +keayr   pGG +  le+
       CCE28826.1 181 WDANHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGGWVESLEY 223
                      56689***********************************997 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00018      0.23      21      70 ..     124     175 ..      97     188 .. 0.80
   2 ?    3.7   0.0     0.047        60      29      39 ..     211     221 ..     208     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00018
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p++ +   d 
  CCE28826.1 124 KIHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNLCFEIDDA 175
                 6789***********9999999875.9**********9877766666655555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.047
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + l
  CCE28826.1 211 CCAPGGWVESL 221
                 *******9877 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.4e-05     0.031      24      59 ..     123     158 ..     114     164 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE28826.1 123 DKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSP 158
                 44569**********************999999765 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.4e-05     0.044      44      82 ..     122     160 ..      97     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.4e-05
  Methyltransf_16  44 elsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      + +  +vl++G G+G+  + +a + p+a+vi tDl+  +
       CCE28826.1 122 KDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQ 160
                      566789****************************98765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.8e-05     0.049       5      33 ..     128     156 ..     124     160 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.8e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28826.1 128 VLDVGTGSGIWAIEFADQFPNASVIGTDL 156
                     89************************876 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.9e-05     0.076      56      95 ..     118     157 ..      63     162 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.9e-05
                     HSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  56 eafdleglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +  +  ++++++DvG G+G  a + + ++P+ +vi  Dl+
      CCE28826.1 118 APLKKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 157
                     444567899*************************999985 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00018      0.23      69     103 ..     120     153 ..     110     158 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 l+ +k  rvL+vG+GsG+ +  +a  + +   v++
  CCE28826.1 120 LKKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VIG 153
                 5557789***********9999988776555.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 3025.83
//
Query:       CCE28827.1  [L=59]
Description: uncharacterized protein CPUR_02516 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 459.73
//
Query:       CCE28828.1  [L=156]
Description: uncharacterized protein CPUR_02517 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1228.60
//
Query:       CCE28829.1  [L=441]
Description: uncharacterized protein CPUR_02518 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-06   25.9   0.0       0.97    9.7   0.0    3.9  3  Clr5           Clr5 domain
    0.00017   21.4   7.0       0.22   11.1   0.1    3.4  3  Borrelia_orfA  Borrelia ORF-A
     0.0011   19.4   0.4       0.33   11.4   0.1    3.5  3  Rep_fac_C      Replication factor C C-terminal domain
  ------ inclusion threshold ------
       0.06   13.8   6.2        1.8    8.9   0.1    3.8  4  DUF3486        Protein of unknown function (DUF3486)
        2.4    8.2  11.6       0.77    9.8   0.6    3.0  3  7TMR-HDED      7TM-HD extracellular


Domain annotation for each model (and alignments):
>> Clr5  Clr5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.034   1.2e+02      36      53 ..      98     115 ..      49     116 .. 0.69
   2 !    9.7   0.0   0.00027      0.97      33      53 ..     154     174 ..     134     175 .. 0.77
   3 !    8.3   0.0   0.00072       2.6      19      53 ..     196     234 ..     183     235 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.034
        Clr5  36 FkatkrqyktrfkkWgfr 53 
                  + + + +k+ ++ Wgf+
  CCE28829.1  98 RTISLSTLKRNIRDWGFN 115
                 445778899*******96 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00027
        Clr5  33 ehgFkatkrqyktrfkkWgfr 53 
                 +  F+ t r +++r+k Wg++
  CCE28829.1 154 RNEFTITMRTLQRRLKDWGLD 174
                 778****************86 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00072
        Clr5  19 enrsLkdvmeiMee...ehgFk.atkrqyktrfkkWgfr 53 
                 ++ +   +++ M e   e g    ++r + +++k Wgf+
  CCE28829.1 196 QEVPVATIRRSMNEaieEQGLPpISERTFYSQLKSWGFQ 234
                 5567777788885544466666459*************8 PP

>> Borrelia_orfA  Borrelia ORF-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   6.2e-05      0.22      20      56 ..      19      51 ..       2      61 .. 0.81
   2 !   10.6   0.2   9.3e-05      0.33      26      55 ..      81     110 ..      72     129 .. 0.93
   3 ?    1.8   0.4     0.042   1.5e+02      25      55 ..     139     169 ..     115     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.2e-05
  Borrelia_orfA 20 ykkkYsqsdIlylfnsnLkkngqkevkirTlqeDlky 56
                    ++ Y q dIl  +n  +  + q+ +++rTlq    +
     CCE28829.1 19 IRDGYRQEDILSRVNTQVVAQDQRAISLRTLQ----L 51
                   4588****************************....3 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 9.3e-05
  Borrelia_orfA  26 qsdIlylfnsnLkkngqkevkirTlqeDlk 55 
                    qsdIl  +n+ L+ n+q+++++ Tl+++++
     CCE28829.1  81 QSDILGSVNEQLSANNQRTISLSTLKRNIR 110
                    99************************9886 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.042
  Borrelia_orfA  25 sqsdIlylfn.snLkkngqkevkirTlqeDlk 55 
                    ++ +Il  +n + +++n+++ +++rTlq+ lk
     CCE28829.1 139 TTRQILEHVNtQRIARNEFT-ITMRTLQRRLK 169
                    567899999934699**999.*******8665 PP

>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   9.1e-05      0.33      16      81 ..       6      72 ..       1      74 [. 0.67
   2 ?    3.6   0.0     0.025        90      17      49 ..      63      94 ..      53     111 .. 0.82
   3 ?    1.6   0.0       0.1   3.6e+02      23      70 ..     124     166 ..     103     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.1e-05
                T-HHHHHHHHHHHHHHC---HHHHHHHHHHHGCCS....S-HHHHHHHHHHHHHHHHHHHCTH-HHHH CS
   Rep_fac_C 16 gdfeeaykklrellvekGysaediltqlhrvvkeqee..lpeaqkleilellgeiekrlveGasehlq 81
                 d++ +++ ++ +l+ +Gy  edil+ +   v+ q++  ++ ++   ++++    +k  ++G+ e++q
  CCE28829.1  6 TDISSCRELIQ-DLIRDGYRQEDILSRVNTQVVAQDQraISLRTLQLFIKENLSLDKPDLDGVRELVQ 72
                57889999**6.*****************999998422233322222223345556666666666666 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.025
                -HHHHHHHHHHHHHHC---HHHHHHHHHHHGCC CS
   Rep_fac_C 17 dfeeaykklrellvekGysaediltqlhrvvke 49
                d++ +++ ++ +l+ +G+  +dil  + + +  
  CCE28829.1 63 DLDGVRELVQ-TLIHEGIRQSDILGSVNEQLSA 94
                6677889996.*************999988776 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
                 HHHHHHHHHC---HHHHHHHHHHHGCCS..S-HHHHHHHHHHHHHHHH CS
   Rep_fac_C  23 kklrellvekGysaediltqlhrvvkeqeelpeaqkleilellgeiek 70 
                 ++lr +lv+ G++  d  +q+ + v +q      +++e+   + + + 
  CCE28829.1 124 NSLR-ELVQTGLADGDTTRQILEHVNTQ----RIARNEFTITMRTLQR 166
                 4565.99999999999999999999886....3456666654555444 PP

>> DUF3486  Protein of unknown function (DUF3486)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1       0.1   3.7e+02      14      49 ..      11      45 ..       9      55 .. 0.79
   2 ?    8.9   0.1   0.00051       1.8      15      56 ..      68     108 ..      65     122 .. 0.88
   3 ?    3.3   0.5     0.026        95      13      59 ..     125     170 ..     123     213 .. 0.73
   4 ?    0.3   0.0      0.23   8.3e+02      15      49 ..     187     220 ..     173     227 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.1
     DUF3486 14 vreeLdeaLrekgftqdeIyeelnallaerGeykiS 49
                +re + + L+  g+ q++I+ ++n+++ ++ + +iS
  CCE28829.1 11 CRELI-QDLIRDGYRQEDILSRVNTQVVAQDQRAIS 45
                56655.8899999999********998776655555 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00051
     DUF3486  15 reeLdeaLrekgftqdeIyeelnallaerGeykiSkSalnry 56 
                 re + ++L+ +g+ q++I+  +n++l +  +  iS S l r 
  CCE28829.1  68 RELV-QTLIHEGIRQSDILGSVNEQLSANNQRTISLSTLKRN 108
                 5555.99********************************996 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.026
     DUF3486  13 evreeLdeaLrekgftqdeIyeelnallaerGeykiSkSalnryaqr 59 
                 ++re +++ L++ ++t  +I+e++n++  +r e+ i    l+r  + 
  CCE28829.1 125 SLRELVQTGLADGDTTR-QILEHVNTQRIARNEFTITMRTLQRRLKD 170
                 579999*********95.*******9866677677776666666665 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.23
     DUF3486  15 reeLdeaLrekgftqdeIyeelnallaerGeykiS 49 
                  e++  +L ++++  + I + +n++++e+G   iS
  CCE28829.1 187 NEDI-SELLAQEVPVATIRRSMNEAIEEQGLPPIS 220
                 5555.567777777788999999999999977777 PP

>> 7TMR-HDED  7TM-HD extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.6   0.00021      0.77     115     173 ..      11      65 ..       2      72 .. 0.80
   2 ?    3.3   0.3     0.022        78     114     177 ..      66     128 ..      63     134 .. 0.66
   3 ?   -0.7   4.6      0.37   1.3e+03      89     148 ..     161     219 ..      90     237 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00021
   7TMR-HDED 115 ieqilerilsqgipedeearekvkeqlqaalseearelatkllssvlkpNlvyDeeaTe 173
                 ++++++++ ++g +++ ++ ++v+ q+   + +++r++  + l+ ++k Nl +D++  +
  CCE28829.1  11 CRELIQDLIRDGYRQE-DILSRVNTQV---VAQDQRAISLRTLQLFIKENLSLDKPDLD 65 
                 4566666666666778.9*******99...999*********************98655 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.022
   7TMR-HDED 114 gieqilerilsqgipedeearekvkeqlqaalseearelatkllssvl...kpNlvyDeeaTekrre 177
                 g++++++++ ++gi+++ ++  +v+eql+a+   ++r +    l++ +     N   ++  T+ +re
  CCE28829.1  66 GVRELVQTLIHEGIRQS-DILGSVNEQLSAN---NQRTISLSTLKRNIrdwGFNQNTNRTDTNSLRE 128
                 789999***********.********99433...444444444444443333445556666665555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.37
   7TMR-HDED  89 gaelsdeelrallelsdeeleelqqgieqilerilsqgipedeearekvkeqlqaa.lsee 148
                  ++l+ +  ++ l+  +++ +++ q+  + + ++l+q++p   ++r +++e ++++ l++ 
  CCE28829.1 161 MRTLQRRLKDWGLD-RKSQHARILQESNEDISELLAQEVPVA-TIRRSMNEAIEEQgLPPI 219
                 22222222223333.347777777777777778888888888.888888888877774433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3167.86
//
Query:       CCE28830.1  [L=1073]
Description: probable kinesin-related protein KIP3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.6e-115  385.6   0.0   2.2e-115  385.2   0.0    1.2  1  Kinesin      Kinesin motor domain
    1.7e-27   96.2   0.0    3.5e-27   95.2   0.0    1.5  1  Microtub_bd  Microtubule binding
      0.002   18.4   2.3     0.0051   17.1   2.3    1.6  1  Herpes_UL14  Herpesvirus UL14-like protein
  ------ inclusion threshold ------
       0.05   13.8   0.0       0.24   11.6   0.0    2.2  1  AAA_33       AAA domain


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  385.2   0.0  4.9e-119  2.2e-115       2     333 .]      15     378 ..      14     378 .. 0.89

  Alignments for each domain:
  == domain 1  score: 385.2 bits;  conditional E-value: 4.9e-119
                 E-SSSHHHHTTTTEBCEEEEC.......................................TCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHH CS
     Kinesin   2 vRplnekekeeeeeeevevee.......................................ekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyee 61 
                 vRp++ +e ++ +++ ++                                            ++ +++   ++k+ +++ f+Fd+vfde++tq++vye 
  CCE28830.1  15 VRPFTIREAAQLQKSDDSPVFlgdgslagvpapklhqrglrsvikvvddrclvfdppedsPVQRFSRSVVPTSKKVKDQVFAFDRVFDENTTQSDVYEG 113
                 5555555555555555544445555555555555555666666666666666666666655566777778899999*********************** PP

                 HHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBCTTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECT CS
     Kinesin  62 takplvesvleGynatifaYGqtgsGKTyTmegkeeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkireds 160
                 t+k+l++svl+Gynat+faYG+tg+GKT+T++g+  +++Gii+ +++elFe+i++++++  k++++++sylEiYne+i+DLL +    + + l +reds
  CCE28830.1 114 TTKSLLDSVLDGYNATVFAYGATGCGKTHTITGT-AQHPGIIFLTMQELFEKIDERSQD--KTTELSLSYLEIYNETIRDLLVPGG--SPSGLMLREDS 207
                 *********************************9.999***************998876..899********************94..5567******* PP

                 TSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHH CS
     Kinesin 161 kkgevyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaan 259
                 ++  v+v gl++++ +++eev++++ +g++ r+v+ t++n++SSRSHav++i++ qk+++++ +e +++++l+++DLAGsEras t++ +g rl+E+an
  CCE28830.1 208 NQA-VTVFGLSSHHPRNVEEVMDMIIQGNEYRTVSPTEANATSSRSHAVLQINVAQKDRNADVNEPHTMATLSIIDLAGSERASVTKN-RGVRLTEGAN 304
                 *86.*********************************************************999999********************6.7999****** PP

                 HHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 260 iNkSLlaLgrvisaLaekkkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 iNkSLlaLg++i+aL++k++++h+pYR+SkLTrlL+ sLgGn+kt+miv+vspss +++et +tl++a+rak+i
  CCE28830.1 305 INKSLLALGSCINALCDKRQRAHVPYRNSKLTRLLKFSLGGNCKTVMIVCVSPSSAHFDETQNTLRYANRAKNI 378
                 ************************************************************************98 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.0   7.9e-31   3.5e-27      43     149 .]      81     192 ..       7     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 7.9e-31
                  T........TTTEEEE-SEEEECTTHCCCCCCCC.HHHHHHHHTT--EEEEEEES................ST-HCHHHHHHHHHHCCTSCCCCEEEE CS
  Microtub_bd  43 e.....eekkkkkefsFdrvfeseseqeevfeei.sqlvqsaldgynvcifaygqTGsGKtyTmegeeeeagmipraveeifetiselkekgwkyeie 134
                  +     ++k k++ f Fdrvf+++++q++v+e + + l++s+ldgyn ++fayg TG GKt+T++g+ +++g i  +++e+fe+i e+ ++ ++ e++
   CCE28830.1  81 RsvvptSKKVKDQVFAFDRVFDENTTQSDVYEGTtKSLLDSVLDGYNATVFAYGATGCGKTHTITGTAQHPGIIFLTMQELFEKIDER-SQDKTTELS 177
                  144444678999*******************975278**************************************************9.689999*** PP

                  EEEEEEESS-EEETT CS
  Microtub_bd 135 lqfveiynekvqDlL 149
                  l+++eiyne+++DlL
   CCE28830.1 178 LSYLEIYNETIRDLL 192
                  **************8 PP

>> Herpes_UL14  Herpesvirus UL14-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   2.3   1.1e-06    0.0051      30     127 ..     355     460 ..     350     479 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.1e-06
  Herpes_UL14  30 vstqdPaFveaFtaAkeaeedlkaqlrsdaRlesvrrkikriqakveeqaelrsiLkanRr....ylspkllerldatedkllekedsLeeavael.. 121
                  vs++  +F e     + a+ + ++q ++   +  v+r++k+   k++eq++l ++Lka+ r    ++ +k+ ++ d+ +    e  ++L  a ++   
   CCE28830.1 355 VSPSSAHFDETQNTLRYANRAKNIQTKVTRNVFNVNRHVKDFLVKIDEQMALINELKAQQRdsekMFYAKFRKQCDKRDSIAREGVQRLRAAYDHSaa 452
                  788888888888999999***************************************98763333677888888899888899999999999887643 PP

  Herpes_UL14 122 ..ndelea 127
                     +  ea
   CCE28830.1 453 erRERVEA 460
                  33333344 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.3e-05      0.24       2      64 ..     130     189 ..     130     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.3e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelar 64 
                 v+  G+ G+GK++ +++ +++ g ++l+  +l++++ ++ q+++t   +++ +  +i ne++r
  CCE28830.1 130 VFAYGATGCGKTHTITGTAQHPGIIFLTMQELFEKIDERSQDKTT---ELSLSYLEIYNETIR 189
                 5678********************************986666554...444455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1180  (0.0658152); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 7139.86
//
Query:       CCE28831.1  [L=253]
Description: related to copper transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-38  130.9   0.4    6.9e-38  130.6   0.4    1.1  1  Ctr          Ctr copper transporter family
  ------ inclusion threshold ------
      0.065   12.7   0.4        6.7    6.1   0.0    2.2  2  SfLAP        Sap, sulfolipid-1-addressing protein
       0.39   10.2   6.9        4.8    6.6   2.9    2.1  2  YibE_F       YibE/F-like protein


Domain annotation for each model (and alignments):
>> Ctr  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.4   1.2e-41   6.9e-38       1     148 []      79     231 ..      79     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 1.2e-41
         Ctr   1 mlFhwstddt.ilfrsWritskgqlagsciglfllaifyeflralrerlerewdrhlarsrekrkaassplvdssssseeeaea........kstssls 90 
                 mlF+ +t+d  +l+++Writs++++agscig+fll++++e+lr    r  +e+dr+l r++++r++a s++ +s++  ++ +++           ss +
  CCE28831.1  79 MLFNLYTIDScFLSSQWRITSNAAFAGSCIGVFLLTLVLELLR----RSIKEYDRYLIRQHRSRHQATSSATESTTGFATGSATppntkncaAAVSSIT 173
                 9******************************************....88899*****655555555555544433333333333555677777777777 PP

         Ctr  91 kseakksvrttpeqqlirallyvvqvllaYilMLlvMtyNvglflavilGagvGeflf 148
                   +a  ++r++  qq +ra+l+++ ++++YilMLl+M+yN++++l+++lGa+vG f+f
  CCE28831.1 174 CGKAVPPFRPNALQQGVRAFLHLLAFFVGYILMLLAMYYNGYILLCIFLGAFVGAFIF 231
                 8888888888888********************************************9 PP

>> SfLAP  Sap, sulfolipid-1-addressing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0011       6.7      75     140 ..     108     173 ..      94     180 .. 0.90
   2 ?    4.8   0.2    0.0028        17      26      46 ..     191     211 ..     186     247 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0011
       SfLAP  75 lGvlllllaaveavrrpkassrselprllsrleslleggalwvAlvlgllsakplllylaalaaig 140
                 +Gv+ll l +  ++r+ k+++r   ++  sr ++++ +   ++++++g + ++++ +++aa+  i 
  CCE28831.1 108 IGVFLLTLVLELLRRSIKEYDRYLIRQHRSRHQATSSATESTTGFATGSATPPNTKNCAAAVSSIT 173
                 799999998888888899999999999999*******************************99886 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0028
       SfLAP  26 rpvlnllaFlvgwlvvlvalg 46 
                 r+ l+llaF+vg +++l+a+ 
  CCE28831.1 191 RAFLHLLAFFVGYILMLLAMY 211
                 8899************99864 PP

>> YibE_F  YibE/F-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.002        12      58      94 ..      83     119 ..      76     127 .. 0.85
   2 ?    6.6   2.9    0.0008       4.8      18      57 ..     187     226 ..     185     236 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.002
      YibE_F  58 litvvtlllvngfnkktlaallgtllgvllalllall 94 
                 l t+ + +l + +   + aa++g+ +gv+l++l+  l
  CCE28831.1  83 LYTIDSCFLSSQWRITSNAAFAGSCIGVFLLTLVLEL 119
                 56777899**********************9988655 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0008
      YibE_F  18 kkGlkallslvlnllvlilvllplllkgvspllvalilvi 57 
                 ++G++a+l l+  ++  il+ll ++++g+ +l ++l + +
  CCE28831.1 187 QQGVRAFLHLLAFFVGYILMLLAMYYNGYILLCIFLGAFV 226
                 58***********************999765555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1905.35
//
Query:       CCE28832.1  [L=68]
Description: uncharacterized protein CPUR_02521 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0014   18.4   0.3     0.0015   18.3   0.3    1.0  1  LAT       Linker for activation of T-cells


Domain annotation for each model (and alignments):
>> LAT  Linker for activation of T-cells
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.3   8.3e-08    0.0015     158     198 ..       5      46 ..       2      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.3e-08
         LAT 158 psnpglrdsafsmesge.DyvnvpeseesaeasldGsreyvn 198
                  snp+  +s+ smes+e  yv  +e+e  ++a l G   yv+
  CCE28832.1   5 FSNPEYSNSTESMESVEkSYVKTSEGESGTKADLRGDVPYVD 46 
                 589************9736*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 495.71
//
Query:       CCE28833.1  [L=212]
Description: uncharacterized protein CPUR_02522 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-06   28.6   0.0    3.7e-06   27.2   0.0    1.6  1  Thioredoxin_4  Thioredoxin
  ------ inclusion threshold ------
      0.072   12.9   1.2        2.4    7.9   0.1    2.7  2  DSBA           DSBA-like thioredoxin domain
      0.085   13.3   0.2       0.17   12.3   0.2    1.4  1  Phage_TAC_6    Phage tail assembly chaperone protein, TAC


Domain annotation for each model (and alignments):
>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   6.2e-10   3.7e-06      13     164 ..      23     207 ..      21     209 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 6.2e-10
                    -SEEEEEEE-TT-HHHHHHHHHHH.HHHHHHHHTT....SEEEEEEE-..---STTTHHHHHHHTT--TTHHHHHHHHHHHHTHHHHTTS-..... CS
  Thioredoxin_4  13 ApvtvieyedlrCphCakfeeeve.klleeyidtG....kvkfiirdfpldkekeslkaamaarcageespeaflaikallysqqeewaes..... 98 
                     ++t+++y+d+ Cp  ak+++++  +++ e  +++    ++ +i+r+   + + +s+    aa +++  +pe f++++all+++q+          
     CCE28833.1  23 SSHTLELYADYCCPFSAKLFRTLTtEVIPEIRENEswasNLVIIFRPSVQPWHPSSTLMHEAALAVLRLRPELFWEFSALLFEEQKGYFDVnvvce 118
                    689***************9999887888885555588889********9999999****************************9988777756665 PP

                    ........HHHHH...................H..HHHHTS.-----.--HHHHHHHHHHHHHHT--SS-EEEETTEEE-TT-..-HHHHHHHH CS
  Thioredoxin_4  99 ........lkelaae..............aldk..dekfea.cleee.kldalveaeskeakkagiestPtfiingekveepq..tyeelkali 164
                            l     +              +l k  ++  e+  l+++ ++  +++   k+ +  g+  tPt++ +g + ++++  t+e++k+++
     CCE28833.1 119 trnetyrrL-----AklagrvgvdeeevfDLLKisNKPAEDgSLNNGnQVTGDLKLITKMNRLVGVHVTPTVVFDGVVRDTSSgwTVEQWKEWL 207
                    544443332.....034556666677777444433333333244443144444444444446679*************7655422789999887 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0004       2.4       1      21 [.      26      46 ..      26      70 .. 0.87
   2 ?    3.7   0.1     0.008        48     125     146 ..     126     147 ..      57     205 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0004
                EEEEEEBTTBHHHHHHHHHHH CS
        DSBA  1 tvdeffDvlCPyCylgkerle 21
                t++++ D+ CP++   ++ l+
  CCE28833.1 26 TLELYADYCCPFSAKLFRTLT 46
                6899*********99988875 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.008
                 HHHHHHHHTTS.HHHHHHHHTS CS
        DSBA 125 ellevaekaGldaeeldeales 146
                  l+++a ++G+d ee+  +l+ 
  CCE28833.1 126 RLAKLAGRVGVDEEEVFDLLKI 147
                 3788888899988887766653 PP

>> Phage_TAC_6  Phage tail assembly chaperone protein, TAC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   2.8e-05      0.17       8      24 ..      83      99 ..      76     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
  Phage_TAC_6  8 rlGlggLrLrPeeFWal 24
                  ++l +LrLrPe FW  
   CCE28833.1 83 EAALAVLRLRPELFWEF 99
                 4789***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 1441.17
//
Query:       CCE28834.1  [L=300]
Description: uncharacterized protein CPUR_02523 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.016   14.8   0.3      0.023   14.3   0.3    1.1  1  SseC             Secretion system effector C (SseC) like fami
      0.089   12.1   0.0       0.12   11.6   0.0    1.1  1  ABC2_membrane_2  ABC-2 family transporter protein
       0.38   11.7   1.4       0.89   10.6   0.1    2.0  2  DUF4834          Domain of unknown function (DUF4834)
        1.4    9.6   5.8        0.3   11.7   0.7    2.3  2  OAD_gamma        Oxaloacetate decarboxylase, gamma chain


Domain annotation for each model (and alignments):
>> SseC  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.3     5e-06     0.023      49      89 ..     226     263 ..     217     267 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5e-06
        SseC  49 aeekakkaGiigkIfGwilaivsvvagalkvgaslllaavg 89 
                 a ek  ++Gi  kIf  i +i+++++ a++v+a++++   +
  CCE28834.1 226 APEKRTIMGIRRKIFWMIFTILALIIVAIAVAAGVGA---S 263
                 468999*****************************99...3 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.8e-05      0.12      10      60 ..     233     283 ..     228     295 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.8e-05
  ABC2_membrane_2  10 dlvrsrrfllltvllplidvalaylkdlgsslqseakaikeatlaleyvea 60 
                      + +r + f+ ++ +l+li va+a+    g sl s++ka  e++ a ++++ 
       CCE28834.1 233 MGIRRKIFWMIFTILALIIVAIAVAAGVGASLASKKKAKYEHSRAPKKSST 283
                      679***************9******************99998877666555 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.44     2e+03      58      85 ..     209     240 ..     182     241 .. 0.38
   2 ?   10.6   0.1    0.0002      0.89       7      62 ..     242     292 ..     238     297 .. 0.45

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.44
     DUF4834  58 q.....srsetkeegeiieeersekeakrkkiF 85 
                 +     +++++ ++++   e+r+   ++r kiF
  CCE28834.1 209 SgdkpsKDKTSPQDEQPAPEKRTIMGIRR-KIF 240
                 12222122333333344444444443333.665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0002
     DUF4834   7 ilifiiailviglsilsvilrtvfglgsrkkssksaqkqfgnstnsnqqksqsrse 62 
                 +++ i+a++++++++ + +  ++  ++++k +   ++++++ +++s++++++++++
  CCE28834.1 242 MIFTILALIIVAIAVAAGVGASL--ASKKKAK---YEHSRAPKKSSTANRKNKNKN 292
                 45666777777777777777777..2322222...222223333333333322222 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4      0.56   2.5e+03      36      52 ..     212     228 ..     202     234 .. 0.53
   2 ?   11.7   0.7   6.8e-05       0.3      13      56 ..     242     285 ..     240     296 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.56
   OAD_gamma  36 akkkkkkakaaaaaaaa 52 
                 ++ k+k++++++++a++
  CCE28834.1 212 KPSKDKTSPQDEQPAPE 228
                 33344444444444333 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 6.8e-05
   OAD_gamma  13 vVFvvLilLslvislfskiikkkakkkkkkakaaaaaaaaaaaa 56 
                 ++F++L+l++++i +   + +  a kkk+k + + a++++++a+
  CCE28834.1 242 MIFTILALIIVAIAVAAGVGASLASKKKAKYEHSRAPKKSSTAN 285
                 68*************99999888888887777776666655543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1199  (0.0668749); expected 358.6 (0.02)
Passed bias filter:                      793  (0.04423); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2108.05
//
Query:       CCE28835.1  [L=383]
Description: uncharacterized protein CPUR_02524 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0029   18.1   0.0     0.0084   16.6   0.0    1.9  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.017   15.9   0.0      0.044   14.6   0.0    1.7  2  DIOX_N        non-haem dioxygenase in morphine synthesis N-te


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   9.4e-07    0.0084      35      97 ..     282     351 ..     195     355 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.4e-07
                   EEE-TT---EE.EETE..EEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGS......EEEEEE CS
  2OG-FeII_Oxy  35 lqddvgglevf.kdgk..wlrvppvdnslivniGdallflsngryksvlHrVlpvneger......Rvsiay 97 
                   + d  +gl+++ ++g+   +r+p+  ++l  + G al+ ++ gr+k v+H V+ v++         R ++a+
    CCE28835.1 282 SPDASAGLYILsRTGEtyQVRIPR--DCLAFQTGEALERITAGRFKAVPHYVRGVKKAAAggraiaRNTLAV 351
                   556689999975667745667776..**************************97776544454555555555 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   4.9e-06     0.044      19     102 ..      25     113 ..      12     142 .. 0.72
   2 ?   -2.9   0.0       1.2   1.1e+04      70      90 ..     211     230 ..     194     241 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.9e-06
      DIOX_N  19 aeqlreAcrevGffyvvnhgvpe...elidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdgkkldw.kesfdlgtelped 102
                 ++ l+eA+    + ++v  +vp+   +l++++++ a  + +lP ee ekl  a+ +   G+sr g+e+++++++d  k s++ ++ + +d
  CCE28835.1  25 LQTLQEAFGPDSLGILVVKDVPPefaQLRRRVLSYASYLGNLPGEELEKLenAHAKYLTGWSR-GKETLRNGRPDTlKGSYYANCAFYTD 113
                 66777888776666777777775445899*****************999955666799*****.88888885666438888888876543 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
      DIOX_N  70 sfrGysrlgeektdgkkldwk 90 
                 +++G s+ g+e+ ++   dw+
  CCE28835.1 211 QNEGTSGGGQEEGEE-DDDWC 230
                 677888888888877.88885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2996.51
//
Query:       CCE28836.1  [L=601]
Description: uncharacterized protein CPUR_02525 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-17   62.7   0.0    2.3e-16   60.4   0.0    2.1  1  APH       Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.021   13.7   0.0        2.9    6.6   0.0    2.1  2  DUF1679   Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.0   2.6e-20   2.3e-16       2     202 ..     130     412 ..     129     414 .. 0.71

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 2.6e-20
                 EEEE--.SSCEEEEEEETT.--EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTE..EEEEEE----EE-SS...HHHHHHH CS
         APH   2 vrelsggasnrtylvttpa.gryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagdtddeeigl..lfalieyvpgrsllr...klsaaql 91 
                 ++  ++g +nrt l+  ++ ++ v ++++p   +++ ++++eva +++ ++    p Pev++++  ++e +   +f l+e ++g+ l++   +++ +++
  CCE28836.1 130 IKKYPDGMYNRTLLLSMDNgKEIVAKIPNPNagQPHFTTASEVATMKFAREVLNtPLPEVYDWCSRAHETPVgaEFILMEKLDGAELEEvwpEMTIQDR 228
                 678899*************66******9999999**************9988779*********9999999999************************* PP

                 HHHHHHHHHHHCCHHCH.-STTTB-.........................................................................S CS
         APH  92 pellealgeflaalhqvdpaalpla.........................................................................d 117
                 +e+++ ++++++   +v+ ++ +                                                                           +
  CCE28836.1 229 YEVVQSVASYQKSWASVSFEQFGSLyfaedfegenipalvytdgegrrvedprfvvgpstsremydagrgdiefdrgpwnsleeyhaaigrreiacvqH 327
                 ************999995333333345555555555555666666666666666666666666665555555554444444444444333333333222 PP

                 HHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHH..............................HHHHHHHH--SSS-EEEE-SS-SGGGEEEC...TT CS
         APH 118 flaqdlellrqlesatarllaselldlleeleeq..............................vlaalaallpgelptvllHgDlhpgNllvd.pddg 185
                 ++                                                              +l  l++  ++  +  l+H Dlh gN+lvd  + +
  CCE28836.1 328 IS-------------------------------HlppspvslhspglyqptrekkvaalecylkLLKYLLPADRSLRASHLWHSDLHAGNVLVDpGNRT 395
                 22...............................02222222222222222222234433443335555555555599*****************9999* PP

                 EEEEE---TT-EEEECC CS
         APH 186 rvtGviDfedaglgppl 202
                 r+ G+iD++ + l+p  
  CCE28836.1 396 RIMGLIDWQSTELSPLY 412
                 *********99999865 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0011        10     116     199 ..     171     253 ..     167     273 .. 0.82
   2 ?    6.6   0.0   0.00033       2.9     270     303 ..     377     408 ..     353     411 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0011
     DUF1679 116 EvelYkileklnheeilltkvyflkkfdeenklkg.yiimeyvedihtlsmyenikadelipvlkaiAtlqalslslseeekksa 199
                 Ev++ k ++++   + +l++vy   +  +e+++ + +i me +++ +  ++   +++++   v++++A+ q    s+s e++ s+
  CCE28836.1 171 EVATMKFAREV--LNTPLPEVYDWCSRAHETPVGAeFILMEKLDGAELEEVWPEMTIQDRYEVVQSVASYQKSWASVSFEQFGSL 253
                 66666666666..378999999887777777765549**********************************99999999887766 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00033
     DUF1679 270 lvhgDlwsaNiLfseeeegklklkkviDyQlvsl 303
                 l h+Dl + N+L    +     +  +iD+Q   l
  CCE28836.1 377 LWHSDLHAGNVLVDPGNR--TRIMGLIDWQSTEL 408
                 89*************766..88999*****9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4404.98
//
Query:       CCE28837.1  [L=335]
Description: uncharacterized protein CPUR_02526 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-18   65.6   0.0    6.8e-18   65.0   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    3.8e-11   43.5   0.0    1.3e-10   41.8   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    1.2e-09   38.7   0.0    1.3e-08   35.4   0.0    2.3  2  Methyltransf_11  Methyltransferase domain
    6.4e-07   30.0   0.0    5.1e-06   27.1   0.0    2.5  1  Methyltransf_12  Methyltransferase domain
    0.00085   18.9   0.0     0.0019   17.8   0.0    1.5  1  MTS              Methyltransferase small domain
     0.0016   18.3   0.0      0.051   13.4   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
     0.0078   16.3   0.0       0.64   10.1   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.014   14.8   0.0       0.56    9.5   0.0    2.1  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.018   14.5   0.0      0.038   13.4   0.0    1.5  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.039   13.7   0.0      0.071   12.8   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
      0.045   13.2   0.0      0.076   12.5   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
      0.069   12.4   0.0       0.11   11.7   0.0    1.4  1  CMAS             Mycolic acid cyclopropane synthetase
      0.073   12.4   0.0       0.13   11.5   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain
        0.1   12.3   0.0        0.2   11.4   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   5.3e-21   6.8e-18      20     124 ..     105     210 ..      79     274 .. 0.76

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 5.3e-21
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllk 110
                      +++  rvLd+G+G Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   e++ ++++fd+I++r+  + ++d+++l++ ++++++
       CCE28837.1 105 KDKMHRVLDVGTGFGIWAIEFADQFPnaSVIGTDLSPCQPQWVPpNLCFEIDDAT--LEWTWDANHFDFIHMRYIVGGIEDWTALFKEAYRCCA 196
                      34445*******************87779************98542222222222..36667999***************************** PP

  Methyltransf_23 111 pgGylllseplasl 124
                      pgG+++ +e+  + 
       CCE28837.1 197 PGGWVESLEYEPEF 210
                      ********987665 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0     1e-13   1.3e-10       1      97 []     111     199 ..     111     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  ++++fD++++++ +  +  ed+ +++ke++r++
       CCE28837.1 111 VLDVGTGFGIWAIEFADQFPNASVIGTDLSPCQPQWVPP-------NLCFEIDDAtLEWTWDANHFDFIHMRYIVGGI--EDWTALFKEAYRCC 195
                      9******************99**********99887655.......558999999778999**********8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28837.1 196 APGG 199
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.85   1.1e+03      34      69 ..       4      40 ..       1      52 [. 0.76
   2 !   35.4   0.0     1e-11   1.3e-08       1      94 [.     112     201 ..     112     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.85
                     HHHHCCHHT-EEEETTEECCCTSS-T.T-EEEEEEES CS
  Methyltransf_11 34 akekaseeglkvefvvadaeklpfed.nsfDlvvsse 69
                     a+++a++++++ +     ae++p++d + +D ++s e
       CCE28837.1  4 AQANAPTPPNNTSNDLIAAEDIPVNDqDEIDSIFSEE 40
                     666677777654556778999***9956999999976 PP

  == domain 2  score: 35.4 bits;  conditional E-value: 1e-11
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G G+ a ++a+++  a+v+g+Dls+ + +++  +         f   da+ +     n fD++ ++  +  +ed+ +++ke++R++ pg
       CCE28837.1 112 LDVGTGFGIWAIEFADQFpnASVIGTDLSPCQPQWVPPNL-------CFEIDDATlEWTWDANHFDFIHMRYIVGGIEDWTALFKEAYRCCAPG 198
                      8**************9999**************9983333.......333344442358999******************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28837.1 199 GWV 201
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     4e-09   5.1e-06       1      99 []     112     201 ..     112     201 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 4e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G G  + ++++++p+++++g+D+sp + +     l +++++ + +++++a+         +fD +++   +  ++d+ +++++++++++
       CCE28837.1 112 LDVGTGFGIWAIEFADQFPNASVIGTDLSPCQPQWVPPNLCFEIDDATLEWTWDAN---------HFDFIHMRYIVGGIEDWTALFKEAYRCCA 196
                      8********************************66777777777766666666655.........7**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28837.1 197 PGGWV 201
                      ***85 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.4e-06    0.0019      21      63 ..      97     139 ..      94     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.4e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +l++  l+k++ ++vlD+G+G+G+ ++++a++ p+a+v  +d 
  CCE28837.1  97 QLFVAPLEKDKMHRVLDVGTGFGIWAIEFADQFPNASVIGTDL 139
                 689999****9*************************9998886 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     4e-05     0.051       2      38 ..     106     141 ..     105     143 .. 0.90
   2 ?    2.4   0.0     0.092   1.2e+02      55     107 ..     150     201 ..     147     237 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4e-05
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                      dk  rvlD+G+G G  ++e+a   +p+a v+G D s+
       CCE28837.1 106 DKMHRVLDVGTGFGIWAIEFA-DQFPNASVIGTDLSP 141
                      56679****************.669*********987 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.092
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      n+ Fe+ d++      +  + fD+i+ + ++  + d  + ++e+ r   pgg +
       CCE28837.1 150 NLCFEIDDATLeWT--WDANHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGGWV 201
                      55677777777333..8889************************9999999965 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0005      0.64      21      70 ..     107     158 ..      71     171 .. 0.82
   2 ?    4.1   0.0     0.035        45      29      39 ..     194     204 ..     191     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0005
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p++ +   d 
  CCE28837.1 107 KMHRVLDVGTGFGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNLCFEIDDA 158
                 5689***********9999999875.9**********9877766666655555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.035
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + l
  CCE28837.1 194 CCAPGGWVESL 204
                 *******9987 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.043        54      48      81 ..     108     140 ..      96     144 .. 0.78
   2 ?    9.5   0.0   0.00043      0.56     112     154 ..     164     206 ..     152     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.043
                      TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  48 gakvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                       ++vlDv +G g +a++++d+  +   v++ D++
       CCE28837.1 108 MHRVLDVGTGFGIWAIEFADQFPN-ASVIGTDLS 140
                      4689***************98754.456666665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00043
                      TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 112 feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       + + fD++ + + +  + D +  +keayr   pGG +  le+
       CCE28837.1 164 WDANHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGGWVESLEY 206
                      56689**********************************9997 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         5   6.4e+03      53      72 ..      28      47 ..      17      60 .. 0.58
   2 ?   13.4   0.0     3e-05     0.038     159     194 ..     105     141 ..      81     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5
        PrmA 53 keevkvkalfkeeteakeli 72
                +++ +++++f+ee++ +  i
  CCE28837.1 28 NDQDEIDSIFSEEQSSTTSI 47
                45555666666555444333 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3e-05
        PrmA 159 vkegeevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                   + ++vlDvGtG Gi ai  a ++  ++v+++D+ +
  CCE28837.1 105 KDKMHRVLDVGTGFGIWAIEfADQFPNASVIGTDLSP 141
                 344569*************7477999********987 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.6e-05     0.071      43      82 ..     104     143 ..      82     169 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-05
  Methyltransf_16  43 nelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      ++ +  +vl++G G G+  + +a + p+a+vi tDl+  +
       CCE28837.1 104 EKDKMHRVLDVGTGFGIWAIEFADQFPNASVIGTDLSPCQ 143
                      5667889****************************98765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     6e-05     0.076       5      33 ..     111     139 ..     107     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G G + ++ A ++P+ +++G ++
      CCE28837.1 111 VLDVGTGFGIWAIEFADQFPNASVIGTDL 139
                     89************************876 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.8e-05      0.11      62     101 ..     107     147 ..      96     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.8e-05
                 TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHH CS
        CMAS  62 pGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqakla 101
                 + +++Ld+G+G+G  +++ ++++ +++v+g  lS  q +++
  CCE28837.1 107 KMHRVLDVGTGFGIWAIEFADQFpNASVIGTDLSPCQPQWV 147
                 5579******************9789********9887765 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0001      0.13      42      95 ..      85     140 ..      43     145 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
                     HHHTTHHHHHHHHHHSS-G..GG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  42 glqessslvakkvleafdl..eglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     + ++  ++  ++ l    l   ++++++DvG G G  a + + ++P+ +vi  Dl+
      CCE28837.1  85 LCHHCLTILLDDQLFVAPLekDKMHRVLDVGTGFGIWAIEFADQFPNASVIGTDLS 140
                     44444555555555554441157999************************999985 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015       0.2      24      59 ..     106     141 ..      98     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G G  A+ fA ++pn+  + +d  +
  CCE28837.1 106 DKMHRVLDVGTGFGIWAIEFADQFPNASVIGTDLSP 141
                 45569**********************999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2467.22
//
Query:       CCE28838.1  [L=603]
Description: uncharacterized protein CPUR_02527 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-14   54.3   0.0    7.6e-14   52.2   0.0    2.0  1  APH       Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.017   14.0   0.0        1.5    7.6   0.0    2.2  2  DUF1679   Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   8.4e-18   7.6e-14       2     201 ..     130     411 ..     129     413 .. 0.71

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 8.4e-18
                 EEEE--.SSCEEEEEEETT.--EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTE..EEEEEE----EE-SS...HHHHHHH CS
         APH   2 vrelsggasnrtylvttpa.gryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagdtddeeigl..lfalieyvpgrsllr...klsaaql 91 
                 ++ + +g +nr  l+  ++ +++v ++++p   +++ ++++eva +++ ++    p Pev++++  ++e +   +f l+e ++g  l +   + + +++
  CCE28838.1 130 IKKFTDGMYNRALLLCMDNgKEVVAKIPNPNagQPHFTTASEVATMKFAREVLNtPLPEVYDWCSRAQETPVgaEFILMEKLDGVELQEvwpQATLEDR 228
                 78999******9999999956******9999999**************9988779**************999999999999999999999989999*** PP

                 HHHHHHHHHHHCCHHCH.-STTTB-..............................................................SHHCHTCCHH.. CS
         APH  92 pellealgeflaalhqvdpaalpla..............................................................dflaqdlell.. 126
                  el+ a++++++   +v+ ++ +                                                                            
  CCE28838.1 229 LELIKAVAAYQKSWASVSFEQFGSLyfaedfegenmpalvytdgegrrvedprfvvgpstsremfdagrgdiefdrgpwnsleeyhaA--------Igk 319
                 ************9999943333333344444555555555555555555555555555555555555554444444444444443331........033 PP

                 .........HHHHCHHHCCCGCCTCC.HHHHHHHH..........HHHHHHHH--SSS-EEEE-SS-SGGGEEEC...TTEEEEE---TT-EEEEC CS
         APH 127 .........rqlesatarllaselld.lleeleeq..........vlaalaallpgelptvllHgDlhpgNllvd.pddgrvtGviDfedaglgpp 201
                          + l    ++++ s+ ++ l++  +e+          +l+ +++  ++ ++  l+H Dlh gN+ vd  + +r++G+iD++   l+p 
  CCE28838.1 320 reiaciknaPHL----PPSPVSLRGPgLYQPTRERkvaavecylkLLEYILPADRSLGSSHLWHDDLHVGNIFVDpGNRTRIIGLIDWQSIELSPL 411
                 333331111222....3333333333433344444677677777777777777777*******************9999**********9888876 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00017       1.5     116     204 ..     171     259 ..     167     278 .. 0.82
   2 ?    4.0   0.0     0.002        18     263     304 ..     371     409 ..     344     411 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00017
     DUF1679 116 EvelYkileklnheeilltkvyflkkfdeenklkg.yiimeyvedihtlsmyenikadelipvlkaiAtlqalslslseeekksa.sgadf 204
                 Ev++ k ++++   + +l++vy   +  +e+++ + +i me +++++  ++  +++ ++ + ++ka+A+ q    s+s e++ s+   +df
  CCE28838.1 171 EVATMKFAREV--LNTPLPEVYDWCSRAQETPVGAeFILMEKLDGVELQEVWPQATLEDRLELIKAVAAYQKSWASVSFEQFGSLyFAEDF 259
                 67777776666..488999999988777777765549***********************************9999999988776555555 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.002
     DUF1679 263 vlGikkvlvhgDlwsaNiLfseeeegklklkkviDyQlvslg 304
                  lG    l h Dl   Ni+    +     +  +iD+Q + l+
  CCE28838.1 371 SLGS-SHLWHDDLHVGNIFVDPGNR--TRIIGLIDWQSIELS 409
                 5554.4589***********99766..78889*****99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4507.85
//
Query:       CCE28839.1  [L=283]
Description: uncharacterized protein CPUR_02528 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-43  146.7   0.0    8.4e-43  146.3   0.0    1.2  1  FRG1      FRG1-like domain
     0.0028   17.9   0.0     0.0054   17.0   0.0    1.5  1  Fascin    Fascin domain
  ------ inclusion threshold ------
        2.3    8.8   7.5       0.25   11.9   2.7    1.8  2  bZIP_Maf  bZIP Maf transcription factor


Domain annotation for each model (and alignments):
>> FRG1  FRG1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.3   0.0   1.4e-46   8.4e-43       4     191 .]      94     282 ..      91     282 .. 0.91

  Alignments for each domain:
  == domain 1  score: 146.3 bits;  conditional E-value: 1.4e-46
        FRG1   4 lealdeGdftigePhdegegPdPeevftavkvasdekislKsgyGkYlgvdkegilsaraeAisseEqfevvfeeg..ktallal..aketflsvdeek 98 
                 + ++++G++  +ePhd+      + v++a++v++++++ +K+++G++l +dk g lsa++eA+s+ E f v+ + +  +++ + l   +et +++++  
  CCE28839.1  94 IVNIVDGNPSSAEPHDV------RMVWVANQVSGTQHMRFKGHHGRFLACDKIGALSATSEAVSPLECFNVIADPNsnTPGTFQLqtLHETLITIKP-- 184
                 67999************......************************************************97754114444444447889999999.. PP

        FRG1  99 divakskkaaeeevveiRsdaer..egktkdrirvedreklrekeskyvkkfqkiqdkkl......rldkedvkrlkkarkeGnlhEvlLDrrvkmksD 189
                     + + +++   +e+R+d+      +t +rir+++r+k+r+k sk+ k+  ki++++l      rl++++v+ lk+ar++G++hE lLD+r k ++D
  CCE28839.1 185 ---NQTQSTKSTAPAELRGDEDDstAPHTIMRIRMQARFKPRIKTSKEEKALSKISRRELeeavgrRLEEDEVRILKRARRQGDYHEKLLDMRIKNRHD 280
                 ...677777888999*****98854567899******************************************************************** PP

        FRG1 190 ky 191
                 ky
  CCE28839.1 281 KY 282
                 *9 PP

>> Fascin  Fascin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     9e-07    0.0054      25      73 ..     112     160 ..     101     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9e-07
                 GEEEEEEETTSEEEEEEETTSEEEEE-TTSBEEEEESS--GGGEEEEEE CS
      Fascin  25 qlftLefdeesyavaLrshngkYlsldkdGrvvaeaetkeedtlFelef 73 
                  ++   + ++++ ++++ h g++l++dk G++ a++e  ++  +F++ +
  CCE28839.1 112 MVWVANQVSGTQHMRFKGHHGRFLACDKIGALSATSEAVSPLECFNVIA 160
                 5677777777888899999999999999999999999999888888766 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       1.3   7.7e+03      53      80 ..      16      43 ..      10      51 .. 0.43
   2 ?   11.9   2.7   4.1e-05      0.25       4      35 ..     231     263 ..     228     279 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
    bZIP_Maf 53 keelekekeeleeelerlqqelsrlrqe 80
                ++ +++  +  +++  + + +l+ + + 
  CCE28839.1 16 RKRAAEAPSTNSTNDTEPASQLQKVDHH 43
                3333333333333333334444444444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.1e-05
    bZIP_Maf   4 eellslsvrEfnrfl.rglteeeverLKqrRRr 35 
                  +l+ +s+rE+ + + r+l e+ev  LK++RR 
  CCE28839.1 231 KALSKISRRELEEAVgRRLEEDEVRILKRARRQ 263
                 67999******9999*****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2276.02
//
Query:       CCE28840.1  [L=322]
Description: uncharacterized protein CPUR_02529 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-10   41.7   5.2     0.0032   18.3   0.0    5.5  7  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.029   14.7   0.0        7.6    6.9   0.0    3.4  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2   1.1e+04      25      36 ..      31      41 ..      22      42 .. 0.76
   2 ?    3.8   0.0     0.013   1.2e+02       9      34 ..      58      84 ..      50      85 .. 0.78
   3 ?    2.3   0.0     0.038   3.4e+02      12      32 ..      89     111 ..      83     119 .. 0.76
   4 !   14.5   0.0   5.6e-06      0.05      10      38 .]     134     164 ..     130     164 .. 0.89
   5 ?   -1.4   0.0      0.57   5.1e+03       5      37 ..     176     207 ..     173     208 .. 0.53
   6 ?   -2.0   0.0      0.91   8.2e+03      13      32 ..     234     255 ..     225     257 .. 0.58
   7 !   18.3   0.0   3.6e-07    0.0032       8      37 ..     287     318 ..     280     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                EEEEETTSEEEE CS
        WD40 25 lasGsdDgtvri 36
                +a +s D+++ +
  CCE28840.1 31 VAISS-DQHLSL 41
                66778.999876 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.013
                SSSSEEEEE.EETTSSEEEEEETTSEE CS
        WD40  9 GHssvtsla.fspdgawlasGsdDgtv 34
                 H++ t l+ f+   + ++++++Dgtv
  CCE28840.1 58 QHGNLTTLSlFDAQESVVCTAGEDGTV 84
                4666888887888888899999****8 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.038
                 SEEEEEEETTSSEEEEEET..TS CS
        WD40  12 svtslafspdgawlasGsd..Dg 32 
                 ++ sla sp+ + +a G++  Dg
  CCE28840.1  89 PILSLACSPSTKTIAVGTElqDG 111
                 5899**********999744466 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 5.6e-06
                 S.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40  10 H.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 H +++t laf+p+ + ++ sGs Dg v i+d
  CCE28840.1 134 HsDDITKLAFHPSEPAVLlSGSTDGLVNIYD 164
                 8566************644**********98 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 0.57
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +t+  H  s+++  f  +   la ++ D +  ++
  CCE28840.1 176 QTFN-HnASIHHAEFLTSTEVLALSH-DEHFSLY 207
                 5553.756688884444444443245.6666665 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 0.91
                 EEEEEEETTSSEEE..EEETTS CS
        WD40  13 vtslafspdgawla..sGsdDg 32 
                 v s+a  +dg+  +  +Gs D+
  CCE28840.1 234 VASVAIKSDGRGAVigCGSQDR 255
                 5555555555554323567776 PP

  == domain 7  score: 18.3 bits;  conditional E-value: 3.6e-07
                 ESSSS..EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   8 tGHss..vtslafspdgawlasGsdDgtvriW 37 
                  +H++  v+s++f +d  +++++++Dgtv+ W
  CCE28840.1 287 GAHGDelVRSFCFFDDAELVFTAGEDGTVKAW 318
                 5895569***********************99 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.19   1.7e+03      36      57 ..      85     106 ..      61     120 .. 0.74
   2 ?    6.9   0.0   0.00084       7.6      34      68 ..     131     166 ..      93     190 .. 0.79
   3 ?    3.2   0.0     0.012   1.1e+02      26      63 ..     279     316 ..     274     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.19
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavay 57 
                  + +  + sLa +p+ k +av++
   CCE28840.1  85 AANAPILSLACSPSTKTIAVGT 106
                  4556777888888888888886 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00084
  ANAPC4_WD40  34 edkedsevrsLaWkpdg.klLavaysdgevrlldae 68 
                  +d ++  +++La++p++  +L  +  dg v+++d  
   CCE28840.1 131 QDLHSDDITKLAFHPSEpAVLLSGSTDGLVNIYDTR 166
                  5567789********9846899***********975 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.012
  ANAPC4_WD40  26 gqrvwtleedkedsevrsLaWkpdgklLavaysdgevr 63 
                   q+ ++l+ ++ d+ vrs+++  d +l   a +dg+v+
   CCE28840.1 279 TQNTVGLPGAHGDELVRSFCFFDDAELVFTAGEDGTVK 316
                  5666667888999**********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2565.92
//
Query:       CCE28841.1  [L=462]
Description: related to mitochondrial carrier family protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-62  208.0   3.5    5.5e-21   74.3   0.0    4.3  3  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.19   11.9   0.2       0.19   11.9   0.2    2.8  3  DUF4148    Domain of unknown function (DUF4148)


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.4   5.6e-23     5e-19       2      90 ..      51     212 ..      50     217 .. 0.94
   2 !   60.4   0.0   1.3e-20   1.2e-16       9      94 ..     229     314 ..     226     317 .. 0.96
   3 !   74.3   0.0   6.1e-25   5.5e-21       3      94 ..     346     446 ..     344     449 .. 0.94

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 5.6e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH................................................................. CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqt................................................................. 35 
                 +++v +++++++ + ++++l++tPldvv++rlq+                                                                 
  CCE28841.1  51 DITVPQKMMSAMSGSLFTSLLVTPLDVVRVRLQSqttptspvdfskltlrtssltpaqtaelgvtaccrevffqgnaselciavargeglvaptpatss 149
                 678999*************************************************************************************99999999 PP

                 ........CCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  36 ........qkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90 
                         + ++++k+++++++d l+ki ++eG++ l+rGl+p+ll+++pa+ ++f+ y+ l+
  CCE28841.1 150 sapagaacAVHEAQKRTFNSTFDGLRKIARNEGITTLWRGLSPTLLMTIPANIIYFTGYDWLR 212
                 99999988888888888888****************************************986 PP

  == domain 2  score: 60.4 bits;  conditional E-value: 1.3e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   9 llaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 llaG+ a ++a+ ++ P+++ +tr+q++++ s++++ +++l+ +++++  +G  +l+rGl+ +l r +p s+l+++ yet++  l+
  CCE28841.1 229 LLAGSSARTLAAAAVGPIELFRTRMQAASGASTTNHLTETLKGVREMVAAHGYGSLWRGLTLTLWRDVPFSGLYWWGYETIRAGLT 314
                 89*******************************************************************************98776 PP

  == domain 3  score: 74.3 bits;  conditional E-value: 6.1e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.........HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.........ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrl 92 
                  +++ +++aG+ +ga+a++vt+P+dv Ktr q+ ++  ++++ a+         +++ l +i+k+eG++gl++G++p+ l+vapa a++ ++ye+ kr 
  CCE28841.1 346 ETFVDSFAAGASSGALASIVTMPFDVGKTRTQVYREVPASANAAGnvrlpeersMMRLLWHIFKTEGMAGLWKGWIPRTLKVAPACAIMISSYEVGKRA 444
                 57899****************************99999988887799999***********************************************99 PP

                 HC CS
   Mito_carr  93 ll 94 
                 + 
  CCE28841.1 445 FR 446
                 86 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.6       1.1   9.5e+03      11      28 ..     149     165 ..     142     166 .. 0.46
   2 ?   -1.7   0.4      0.37   3.3e+03      11      22 ..     235     255 ..     228     266 .. 0.53
   3 ?   11.9   0.2   2.1e-05      0.19      12      47 ..     353     395 ..     346     399 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.1
     DUF4148  11 aaavaaaaalaahskspk 28 
                   a+a aa + +h ++ +
  CCE28841.1 149 SSAPAGAACA-VHEAQKR 165
                 3444444422.3555554 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.37
     DUF4148  11 aaavaaaaala.........a 22 
                 a ++aaaa+           a
  CCE28841.1 235 ARTLAAAAVGPielfrtrmqA 255
                 444444444336666665541 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 2.1e-05
     DUF4148  12 aavaaaaala....ahskspkTRAqVraEL.aqaeaaG..ylp 47 
                 aa a++ ala      ++ +kTR qV +E+ a a aaG  +lp
  CCE28841.1 353 AAGASSGALAsivtMPFDVGKTRTQVYREVpASANAAGnvRLP 395
                 6677777777888877999**********95667777755555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3650.49
//
Query:       CCE28842.1  [L=568]
Description: related to H. sapiens F-box protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-08   33.2   0.5      1e-07   31.7   0.5    1.9  1  F-box-like  F-box-like
    0.00013   21.7   0.5    0.00058   19.7   0.6    2.2  2  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.5   1.1e-11     1e-07       1      47 [.     238     287 ..     238     288 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.1e-11
  F-box-like   1 isrLPdEiLlqIFsy..L.ppsdLlrlalVCrrWrrvaldtplLWrrlvl 47 
                 is+LP E+L++I++   L +  d +rl+lVC+  + ++ + + +Wr ++l
  CCE28842.1 238 ISSLPRELLVHILREvaLhDVGDFARLSLVCKPLAYLVTTSQHIWRDICL 287
                 689**********9533645559***************999*******97 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.6   6.5e-08   0.00058       2      37 ..     237     275 ..     236     286 .. 0.91
   2 ?   -2.7   0.0      0.68   6.1e+03      33      42 ..     282     291 ..     280     293 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.5e-08
                 HHHHS-HHHHHHHHHTS-HHH...HHHHCTT-HHHHHHH CS
       F-box   2 tlsrLPsevlrhILerLplsd...llalrrVSkgwrili 37 
                 ++s+LP e+l hIL+ + l d     +l++V+k +  l+
  CCE28842.1 237 PISSLPRELLVHILREVALHDvgdFARLSLVCKPLAYLV 275
                 79*******************************877766 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.68
                 HHHHHTTHHH CS
       F-box  33 wrilidsdrl 42 
                 wr+++ ++++
  CCE28842.1 282 WRDICLGPKF 291
                 9999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4094.22
//
Query:       CCE28843.1  [L=386]
Description: uncharacterized protein CPUR_02532 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-21   75.3   0.0    8.3e-21   74.5   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.3e-12   48.2   0.0    4.7e-12   46.4   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    5.9e-12   46.1   0.0      1e-10   42.1   0.0    2.3  2  Methyltransf_11  Methyltransferase domain
    1.9e-06   28.6   0.0    1.9e-05   25.3   0.0    2.4  1  Methyltransf_12  Methyltransferase domain
    1.3e-05   25.0   0.0     0.0065   16.3   0.0    2.8  3  Methyltransf_31  Methyltransferase domain
    0.00011   21.7   0.0     0.0015   17.9   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00045   19.8   0.0     0.0015   18.1   0.0    1.8  2  MTS              Methyltransferase small domain
    0.00093   19.4   0.1      0.083   13.0   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
     0.0017   17.8   0.0     0.0041   16.6   0.0    1.5  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0034   17.2   0.0     0.0072   16.1   0.0    1.5  1  DUF938           Protein of unknown function (DUF938)
  ------ inclusion threshold ------
      0.017   14.6   0.0       0.03   13.8   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.018   14.7   0.0      0.031   14.0   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.027   14.2   0.0       0.04   13.7   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.027   13.8   0.0      0.062   12.6   0.0    1.6  1  CMAS             Mycolic acid cyclopropane synthetase
      0.029   13.7   0.0      0.051   12.9   0.0    1.3  1  GidB             rRNA small subunit methyltransferase G
      0.068   12.5   0.0       0.12   11.6   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   7.4e-24   8.3e-21      15     160 ..     101     258 ..      86     260 .. 0.82

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 7.4e-24
  Methyltransf_23  15 rllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.eaaepqgkfdlIvlrevlehvpdppellrq 104
                      +l+p  +++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++  ++  ++  d++ e+++++++fd+I++r+  + ++d+++ ++ 
       CCE28843.1 101 FLAPLeKDKTHRVLDVGTGSGIWAVEFADQFPnaSVIGTDLSPCQPQWVP--PNVCFEIDDAMlEWTYDDNHFDFIHMRYIVGGIQDWTAFFKE 192
                      45543256667*******************87779************984..33333333334588899************************* PP

  Methyltransf_23 105 iatllkpgGylllseplasl........kedrllldwlylvpagrhi..sffsarslkelleeaGl 160
                      ++++++pgG+++ +e+ a+          e  l+ + ++ ++ag+++   +f  + l ++leeaG+
       CCE28843.1 193 AYRCCAPGGWVESLEYEAEIcsddgstnLEPVLASYGELFRQAGEVMkrPLFVHEILPQALEEAGF 258
                      ***************988878888876556666667788899996666699999999999999999 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   4.2e-15   4.7e-12       1      97 []     113     201 ..     113     201 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 4.2e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G ++ ++a+++++a+v+g+D+s+ + + +        +nv f+  da  ++ ++d++fD++++++ +     +d+ +++ke++r++
       CCE28843.1 113 VLDVGTGSGIWAVEFADQFPNASVIGTDLSPCQPQWVP-------PNVCFEIDDAmLEWTYDDNHFDFIHMRYIVGG--IQDWTAFFKEAYRCC 197
                      9******************99**********9987654.......5779999998799*************866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28843.1 198 APGG 201
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.54     6e+02      51      74 ..      20      44 ..       3      58 .. 0.80
   2 !   42.1   0.0   8.9e-14     1e-10       1      94 [.     114     203 ..     114     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.54
                     ECCCTSS-T.T-EEEEEEES-CCC- CS
  Methyltransf_11 51 daeklpfed.nsfDlvvssevlhhv 74
                      ae++p++d + +D ++s e+++  
       CCE28843.1 20 AAEDIPVNDqDEIDSIFSEESVQSA 44
                     5899***9956*******9998865 PP

  == domain 2  score: 42.1 bits;  conditional E-value: 8.9e-14
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  ++        f   da  +  + dn fD++ ++  +  ++d+ +++ke++R++ pg
       CCE28843.1 114 LDVGTGSGIWAVEFADQFpnASVIGTDLSPCQPQWVPPNV-------CFEIDDAMlEWTYDDNHFDFIHMRYIVGGIQDWTAFFKEAYRCCAPG 200
                      8**************9999**************9983333.......333333332578*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28843.1 201 GWV 203
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.7e-08   1.9e-05       1      99 []     114     203 ..     114     203 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.7e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +       ++++         +  l+ + + ++fD +++   +  ++d+ +++++++++++
       CCE28843.1 114 LDVGTGSGIWAVEFADQFPNASVIGTDLSPCQPQWVPPNVCFEID---------DAMLEWTYDDNHFDFIHMRYIVGGIQDWTAFFKEAYRCCA 198
                      8********************************444444444443.........333333333359**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28843.1 199 PGGWV 203
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.4   2.7e+03      36      47 ..      36      47 ..      20      66 .. 0.63
   2 !   16.3   0.0   5.8e-06    0.0065       2      38 ..     108     143 ..     107     145 .. 0.92
   3 ?    5.4   0.0     0.013        15      55     108 ..     152     204 ..     149     239 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.4
  Methyltransf_31 36 iseeaielAren 47
                     +see++++A++ 
       CCE28843.1 36 FSEESVQSATTS 47
                     455666665553 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 5.8e-06
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                      dk+ rvlD+G+G+G  + e+a   +p+a v+G D s+
       CCE28843.1 108 DKTHRVLDVGTGSGIWAVEFA-DQFPNASVIGTDLSP 143
                      78899****************.669*********987 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.013
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggill 108
                      nv Fe+ d+       + d+ fD+i+ + ++  + d  ++++e+ r   pgg + 
       CCE28843.1 152 NVCFEIDDAMLeWT--YDDNHFDFIHMRYIVGGIQDWTAFFKEAYRCCAPGGWVE 204
                      66677777665233..999******************************999765 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.3e-06    0.0015      47     156 ..     109     210 ..      65     216 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.3e-06
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TT.T-TTS-T-EEEEEEES-GGG-S-HHHHHHHH CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanae.eLpfeddsfDvvtvsfGlrnvtDklkaLkea 139
                      + ++vlDv +G+g +a++++d+   +  v++ D+++       + +      n+ f   +a+ e  ++d+ fD++ + + +  + D +  +kea
       CCE28843.1 109 KTHRVLDVGTGSGIWAVEFADQFP-NASVIGTDLSPCQP----QWVPP----NVCFEIDDAMlEWTYDDNHFDFIHMRYIVGGIQDWTAFFKEA 193
                      4458999999******99999985.56799999998533....33333....4555444554378999************************** PP

                      HHHEEEEEEEEEEEE-- CS
  Ubie_methyltran 140 yrvlkpGGrlvvlefsk 156
                      yr   pGG +  le+  
       CCE28843.1 194 YRCCAPGGWVESLEYEA 210
                      *************9865 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.3e-06    0.0015      21      63 ..      99     141 ..      95     144 .. 0.93
   2 ?   -3.8   0.0       7.2     8e+03      55      77 ..     351     373 ..     344     378 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.3e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +l+l  l+k+++++vlD+G+G G+ ++++a++ p+a+v  +d 
  CCE28843.1  99 QLFLAPLEKDKTHRVLDVGTGSGIWAVEFADQFPNASVIGTDL 141
                 789999******************************9998886 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7.2
                 C.EEEEEESBHHHHHHHHHHHHH CS
         MTS  55 eaevtlvdvdarAlesakenlea 77 
                 e+++  +d+d + l++ k++++ 
  CCE28843.1 351 ELTLINCDQDLMPLQAQKTTMNG 373
                 55666789999999999888765 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   7.4e-05     0.083      20      70 ..     108     160 ..      91     174 .. 0.81
   2 ?    4.0   0.0     0.044        49      29      40 ..     196     207 ..     193     232 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.4e-05
                 -TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 +++++v+D+g + G w+   + ++ + + v++ Dl p++p    p+v +   d 
  CCE28843.1 108 DKTHRVLDVGTGSGIWAVEFADQFPN-ASVIGTDLSPCQPQwvpPNVCFEIDDA 160
                 37799************999999875.9**********9988878887765555 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.044
                 T-TTSHHHHHHC CS
        FtsJ  29 gaaPGgwsqvll 40 
                 ++aPGgw + l 
  CCE28843.1 196 CCAPGGWVESLE 207
                 *******99874 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.9   4.3e+03      54      81 ..      28      54 ..      14      67 .. 0.55
   2 !   16.6   0.0   3.6e-06    0.0041     161     194 ..     109     143 ..      96     154 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.9
        PrmA 54 eevkvkalfkeeteakeliaqlkeselg 81
                ++ +++++f+ e+++++ ++ ++ s+l+
  CCE28843.1 28 DQDEIDSIFS-EESVQSATTSIASSILE 54
                4555555555.33334444444444443 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 3.6e-06
        PrmA 161 egeevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                 ++++vlDvGtGSGi a+  a ++  ++v+++D+ +
  CCE28843.1 109 KTHRVLDVGTGSGIWAVEfADQFPNASVIGTDLSP 143
                 5679*************74779999*******987 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.4e-06    0.0072      24      59 ..     108     143 ..     100     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.4e-06
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++t+rvL++++G+G  Av fA ++pn+  + +d  +
  CCE28843.1 108 DKTHRVLDVGTGSGIWAVEFADQFPNASVIGTDLSP 143
                 56789**********************999999765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.7e-05      0.03       4      33 ..     112     141 ..     109     145 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
                     EEEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkknPdknflGiEi 33 
                      vl++G+G+G + v+ A ++P+ +++G ++
      CCE28843.1 112 RVLDVGTGSGIWAVEFADQFPNASVIGTDL 141
                     689************************876 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.8e-05     0.031      40      83 ..     103     146 ..      74     176 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
  Methyltransf_16  40 lganelsklsvlELGsGtGlvGlavaellpeakviltDleelle 83 
                       + ++ ++ +vl++G G+G+  + +a + p+a+vi tDl+  ++
       CCE28843.1 103 APLEKDKTHRVLDVGTGSGIWAVEFADQFPNASVIGTDLSPCQP 146
                      556778899******************************98654 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.6e-05      0.04      68     103 ..     104     138 ..      48     144 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.6e-05
                 HTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  68 llelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                  le +k  rvL+vG+GsG+ ++ +a  + +   v++
  CCE28843.1 104 PLEKDKTHRVLDVGTGSGIWAVEFADQFPNAS-VIG 138
                 34567899*************99998876655.665 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.6e-05     0.062      55     161 ..     102     202 ..      67     207 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.6e-05
                 HTTTT--TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHHH.TS-SSS-EEEEES-GGG-----SEEEEES-GGGT.SGGGHHHHHH CS
        CMAS  55 leklelkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrvd.eldlerkvevklldyedldekvdrvvsvgafehv.gkenydtffk 150
                 l  le ++ +++Ld+G+G G  +++ ++++ +++v+g  lS  q +++  +v  e+d        +l++   d+++d +    +   v g + + +ffk
  CCE28843.1 102 LAPLEKDKTHRVLDVGTGSGIWAVEFADQFpNASVIGTDLSPCQPQWVPPNVCfEID------DAMLEWTYDDNHFDFIH---MRYIVgGIQDWTAFFK 191
                 45566677899******************9789*********999998655430333......23455655566677654...3333325677777777 PP

                 HHHHHS-TT-E CS
        CMAS 151 klkkllkedGl 161
                 ++++   ++G 
  CCE28843.1 192 EAYRCCAPGGW 202
                 77777777775 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.6e-05     0.051      26      67 ..      82     128 ..      78     137 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.6e-05
                 SHHHHHHHCHH.....HHHHHGGCS-CCC-.EEEETSTTTTTHHHHH CS
        GidB  26 epeellerhll.....dslsvlellkekrdkviDvGsGaGlPGipLa 67 
                 e e+l+++h+l     d l +++l k+k ++v+DvG+G G+ ++  a
  CCE28843.1  82 ESEQLWSHHFLtilldDQLFLAPLEKDKTHRVLDVGTGSGIWAVEFA 128
                 5688999998833333455566666666667*********9777655 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.12      17      95 ..      55     142 ..      40     146 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                     HHHHHS--....HHHHHTSSHHHHHHHH.HHHHTTH..HHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGis....lfeaikrdeeerakfn.kglqess..slvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     ++k++G++     f+ ++  ++ +++   + l ++   ++  ++ l        + ++++DvG G+G  a + + ++P+ +vi  Dl+
      CCE28843.1  55 YRKIHGRTyhsdKFTTNYFIPNDDQQLEsEQLWSHHflTILLDDQLFLAPleKDKTHRVLDVGTGSGIWAVEFADQFPNASVIGTDLS 142
                     5555555544445555554444444332123333321133444444443311456789************************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2759.09
//
Query:       CCE28844.1  [L=360]
Description: uncharacterized protein CPUR_02533 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-20   71.3   0.0    1.2e-19   70.7   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.7e-12   47.9   0.0    4.7e-12   46.5   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    4.8e-11   43.2   0.0    1.3e-10   41.7   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    3.8e-07   30.8   0.0      4e-06   27.5   0.0    2.4  2  Methyltransf_12  Methyltransferase domain
    8.8e-05   22.3   0.0       0.01   15.6   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
    0.00031   20.2   0.0      0.004   16.5   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0006   19.3   0.0      0.001   18.5   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00074   19.1   0.0     0.0015   18.1   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0011   19.1   0.0      0.084   13.0   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.022   14.5   0.0      0.048   13.4   0.0    1.5  1  Methyltransf_16  Lysine methyltransferase
      0.028   14.2   0.0       0.05   13.4   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
      0.034   13.4   0.0      0.063   12.6   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain
      0.069   12.6   0.0       0.13   11.7   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.088   12.5   0.0       0.14   11.9   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   9.5e-23   1.2e-19      15     124 ..     118     229 ..      97     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 9.5e-23
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.eaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++  ++  ++  d++ e+++++++fd+I++r+  + ++d++ l++
       CCE28844.1 118 FLAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSVVGTDLSPCQPQWVP--PNVCFEIDDAMlEWTYDDNHFDFIHMRYIVGGIEDWTDLFK 208
                      4554.4444456*******************8777*************984..33333333334588899************************ PP

  Methyltransf_23 104 qiatllkpgGylllseplasl 124
                       ++++++pgG+++ +e+  + 
       CCE28844.1 209 EAYRCCAPGGWVESLEYEPEF 229
                      ***************986655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   3.7e-15   4.7e-12       1      97 []     130     218 ..     130     218 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 3.7e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +        +nv f+  da  ++ ++d++fD++++++ +  +  ed+ +++ke++r++
       CCE28844.1 130 VLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPQWVP-------PNVCFEIDDAmLEWTYDDNHFDFIHMRYIVGGI--EDWTDLFKEAYRCC 214
                      9******************99**********9987654.......5779999998799*************8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28844.1 215 APGG 218
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0     1e-13   1.3e-10       1      94 [.     131     220 ..     131     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+vvg+Dls+ + +++  ++        f   da  +  + dn fD++ ++  +  +ed+ +++ke++R++ pg
       CCE28844.1 131 LDVGTGSGIWAIEFADQFpnASVVGTDLSPCQPQWVPPNV-------CFEIDDAMlEWTYDDNHFDFIHMRYIVGGIEDWTDLFKEAYRCCAPG 217
                      8**************9999**************9983333.......333333332578*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28844.1 218 GWV 220
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0        10   1.3e+04      71      78 ..      66      73 ..      42     101 .. 0.52
   2 !   27.5   0.0   3.1e-09     4e-06       1      99 []     131     220 ..     131     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 10
  Methyltransf_12 71 vasnvlhh 78
                     +as+vl++
       CCE28844.1 66 IASSVLEY 73
                     34444443 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 3.1e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +       ++++         +  l+ + + ++fD +++   +  ++d+ +++++++++++
       CCE28844.1 131 LDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPQWVPPNVCFEID---------DAMLEWTYDDNHFDFIHMRYIVGGIEDWTDLFKEAYRCCA 215
                      8********************************444444444443.........333333333359**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28844.1 216 PGGWV 220
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     8e-06      0.01       5      38 ..     128     160 ..     124     162 .. 0.90
   2 ?    4.3   0.0     0.024        31      55     107 ..     169     220 ..     166     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a vvG D s+
       CCE28844.1 128 HRVLDVGTGSGIWAIEFA-DQFPNASVVGTDLSP 160
                      68****************.669*********987 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.024
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      nv Fe+ d+       + d+ fD+i+ + ++  + d  + ++e+ r   pgg +
       CCE28844.1 169 NVCFEIDDAMLeWT--YDDNHFDFIHMRYIVGGIEDWTDLFKEAYRCCAPGGWV 220
                      66677777665233..999**************************999999965 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.1e-06     0.004      49     154 ..     128     225 ..     118     232 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.1e-06
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TT.T-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanae.eLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                      ++vlDv +G+g +a++++d+   +  vv+ D+++       + +      n+ f   +a+ e  ++d+ fD++ + + +  + D +  +keayr
       CCE28844.1 128 HRVLDVGTGSGIWAIEFADQFP-NASVVGTDLSPCQP----QWVPP----NVCFEIDDAMlEWTYDDNHFDFIHMRYIVGGIEDWTDLFKEAYR 212
                      5789999999999999999985.56799999988533....33333....4555444554378999**************************** PP

                      HEEEEEEEEEEEE CS
  Ubie_methyltran 142 vlkpGGrlvvlef 154
                         pGG +  le+
       CCE28844.1 213 CCAPGGWVESLEY 225
                      *********9997 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   8.1e-07     0.001     161     194 ..     126     160 ..     101     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.1e-07
        PrmA 161 egeevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                 + ++vlDvGtGSGi ai  a ++  ++vv++D+ +
  CCE28844.1 126 KIHRVLDVGTGSGIWAIEfADQFPNASVVGTDLSP 160
                 3369*************747799*********987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.2e-06    0.0015      21      64 ..     116     159 ..     113     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.2e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v+ +d +
  CCE28844.1 116 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 159
                 689999****9999************************999975 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   6.6e-05     0.084      21      70 ..     126     177 ..     104     191 .. 0.81
   2 ?    3.8   0.0     0.042        54      29      39 ..     213     223 ..     207     249 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.6e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 + ++v+D+g + G w+   + ++ + + vv+ Dl p++p    p+v +   d 
  CCE28844.1 126 KIHRVLDVGTGSGIWAIEFADQFPN-ASVVGTDLSPCQPQwvpPNVCFEIDDA 177
                 6799***********9999999875.9**********9988878887765555 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.042
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + l
  CCE28844.1 213 CCAPGGWVESL 223
                 *******9977 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.7e-05     0.048      43      83 ..     123     163 ..      98     195 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.7e-05
  Methyltransf_16  43 nelsklsvlELGsGtGlvGlavaellpeakviltDleelle 83 
                      ++ +  +vl++G G+G+  + +a + p+a+v+ tDl+  ++
       CCE28844.1 123 EKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQP 163
                      5667789*****************************98654 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.9e-05      0.05      24      58 ..     125     159 ..     117     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.9e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 ++ +rvL++++G+G  A+ fA ++pn+    +d  
  CCE28844.1 125 DKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 159
                 44569**********************99988865 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.9e-05     0.063      25      95 ..      85     159 ..      63     163 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
                     HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  25 lfeaikrdeeerakf..nkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                      f+ ++  ++ +++    ++ ++   +  ++ l        ++++++DvG G+G  a + + ++P+ +v+  Dl+
      CCE28844.1  85 KFTTNYFLPNDDQQLetEELCHHCLMILLDDQLFLAPleKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 159
                     55555544444333310344444445555555544441156899************************9999985 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0001      0.13       5      33 ..     130     158 ..     126     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28844.1 130 VLDVGTGSGIWAIEFADQFPNASVVGTDL 158
                     89***********************9875 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.14      69     104 ..     122     156 ..      83     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsi 104
                 le +k  rvL+vG+GsG+ +  +a  + +   vv+ 
  CCE28844.1 122 LEKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VVGT 156
                 5567889*************99998876665.6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2791.37
//
Query:       CCE28845.1  [L=340]
Description: uncharacterized protein CPUR_02534 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-20   73.0   0.0    3.6e-20   72.4   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    7.2e-13   49.1   0.0    2.6e-12   47.3   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    1.2e-11   45.1   0.0      7e-11   42.6   0.0    2.2  2  Methyltransf_11  Methyltransferase domain
    2.1e-07   31.6   0.0    1.7e-06   28.7   0.0    2.3  1  Methyltransf_12  Methyltransferase domain
    1.4e-05   24.9   0.0     0.0095   15.7   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
    0.00057   19.3   0.0     0.0071   15.7   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00066   19.2   0.0     0.0012   18.3   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00072   19.7   0.1      0.041   14.0   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
     0.0019   17.8   0.0     0.0047   16.5   0.0    1.6  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.042   13.1   0.0    1.7  2  Methyltransf_2   O-methyltransferase domain
      0.017   14.9   0.0       0.04   13.6   0.0    1.6  2  Methyltransf_16  Lysine methyltransferase
      0.023   14.5   0.0      0.041   13.6   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
      0.051   13.1   0.2       0.12   11.8   0.0    1.7  2  Methyltransf_4   Putative methyltransferase
       0.12   12.1   0.0       0.22   11.2   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   2.8e-23   3.6e-20      15     126 ..      98     211 ..      75     255 .. 0.80

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 2.8e-23
  Methyltransf_23  15 rllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrq 104
                      +l+p  +++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   e+++++++fd+I++r+  + ++d+++l++ 
       CCE28845.1  98 FLAPVeKDKIHRVLDVGTGSGIWAIEFADQFPnaSVVGTDLSPCQPQWVPpNVCFEIDDAT--LEWTYDDNHFDFIHMRYIVGGIEDWTALFKE 189
                      45554234445*******************8777*************98543333333333..48889************************** PP

  Methyltransf_23 105 iatllkpgGylllseplaslke 126
                      ++++++pgG+++  e++++  +
       CCE28845.1 190 AYRCCAPGGWVESVEYDVEFRS 211
                      ***************9988743 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0     2e-15   2.6e-12       1      97 []     110     198 ..     110     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 2e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +        +nv f+  da  ++ ++d++fD++++++ +  +  ed+ +++ke++r++
       CCE28845.1 110 VLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPQWVP-------PNVCFEIDDAtLEWTYDDNHFDFIHMRYIVGGI--EDWTALFKEAYRCC 194
                      9******************99**********9987653.......5779999999778*************8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28845.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.6   3.4e+03      51      68 ..      20      38 ..       3      48 .. 0.82
   2 !   42.6   0.0   5.5e-14     7e-11       1      94 [.     111     200 ..     111     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.6
                     ECCCTSS-TT.-EEEEEEE CS
  Methyltransf_11 51 daeklpfedn.sfDlvvss 68
                      ae++p++d+  +D v+s+
       CCE28845.1 20 AAEDIPVNDQyEIDSVFSQ 38
                     5899999997689999997 PP

  == domain 2  score: 42.6 bits;  conditional E-value: 5.5e-14
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+vvg+Dls+ + +++  +       v f   da+ +  + dn fD++ ++  +  +ed+ +++ke++R++ pg
       CCE28845.1 111 LDVGTGSGIWAIEFADQFpnASVVGTDLSPCQPQWVPPN-------VCFEIDDATlEWTYDDNHFDFIHMRYIVGGIEDWTALFKEAYRCCAPG 197
                      8**************9999*************9888333.......4444445543368*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28845.1 198 GWV 200
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   1.3e-09   1.7e-06       1      99 []     111     200 ..     111     200 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.3e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp +         ++ +  n ++e+++  l+ + + ++fD +++   +  ++d+ +++++++++++
       CCE28845.1 111 LDVGTGSGIWAIEFADQFPNASVVGTDLSPCQP--------QWVP-PNVCFEIDDATLEWTYDDNHFDFIHMRYIVGGIEDWTALFKEAYRCCA 195
                      8*******************************9........3333.33344444444433333369**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28845.1 196 PGGWV 200
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.4e-06    0.0095       5      38 ..     108     140 ..     104     142 .. 0.90
   2 !    7.1   0.0    0.0035       4.5      55     113 ..     149     206 ..     143     263 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.4e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a vvG D s+
       CCE28845.1 108 HRVLDVGTGSGIWAIEFA-DQFPNASVVGTDLSP 140
                      68****************.669*********987 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0035
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      nv Fe+ d++      + d+ fD+i+ + ++  + d  + ++e+ r   pgg + + +++
       CCE28845.1 149 NVCFEIDDATLeWT--YDDNHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGGWVESVEYD 206
                      88899999998444..99********************************9987666666 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.5e-06    0.0071      49     154 ..     108     205 ..      96     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.5e-06
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrv 142
                      ++vlDv +G+g +a++++d+   +  vv+ D+++       + +  +   +i+     + e  ++d+ fD++ + + +  + D +  +keayr 
       CCE28845.1 108 HRVLDVGTGSGIWAIEFADQFP-NASVVGTDLSPCQ----PQWVPPNVCFEID---DATLEWTYDDNHFDFIHMRYIVGGIEDWTALFKEAYRC 193
                      5799999999999999999985.5679999999854....3344444444544...55678899****************************** PP

                      EEEEEEEEEEEE CS
  Ubie_methyltran 143 lkpGGrlvvlef 154
                        pGG +  +e+
       CCE28845.1 194 CAPGGWVESVEY 205
                      ******999886 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   9.6e-07    0.0012     162     194 ..     107     140 ..      90     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 9.6e-07
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a ++  ++vv++D+ +
  CCE28845.1 107 IHRVLDVGTGSGIWAIEfADQFPNASVVGTDLSP 140
                 369*************747799*********987 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.2e-05     0.041      21      73 ..     106     160 ..      75     173 .. 0.82
   2 ?    3.5   0.0     0.054        69      29      39 ..     193     203 ..     190     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.2e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCCS CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditdp 73 
                 + ++v+D+g + G w+   + ++ + + vv+ Dl p++p    p+v +   d t +
  CCE28845.1 106 KIHRVLDVGTGSGIWAIEFADQFPN-ASVVGTDLSPCQPQwvpPNVCFEIDDATLE 160
                 5689***********9999999875.9**********9988888998877777765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.054
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28845.1 193 CCAPGGWVESV 203
                 *******9876 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.7e-06    0.0047      21      64 ..      96     139 ..      93     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.7e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  ++k++ ++vlD+G+G G+ ++++a++ p+a+v+ +d +
  CCE28845.1  96 QLFLAPVEKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 139
                 67888899999999************************999976 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.3e-05     0.042      25      95 ..      65     139 ..      42     144 .. 0.64
   2 ?   -2.3   0.0       1.7   2.2e+03     146     172 ..     184     210 ..     179     220 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.3e-05
                     HHHHHTSSHHHHHHH..HHHHHTTHHHHHHH..HHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  25 lfeaikrdeeerakf..nkglqessslvakk..vleafdleglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                      f+ ++  ++ +++    +  ++  ++  ++   l+ ++  ++++++DvG G+G  a + + ++P+ +v+  Dl+
      CCE28845.1  65 KFTTNYFLPNDDQQLkaEEICHHGLTILLDDqlFLAPVEKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 139
                     565555544444333003444444445544411455666889**************************9999985 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
                     HHHHHHHHHH--TT-EEEEEE----TT CS
  Methyltransf_2 146 vklLkrvkkalpagGkvivveavlgad 172
                     + l k+ ++ + +gG v  ve  ++ +
      CCE28845.1 184 TALFKEAYRCCAPGGWVESVEYDVEFR 210
                     5789999999*9999998888766555 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.1e-05      0.04      43      83 ..     103     143 ..      70     176 .. 0.84
   2 ?   -2.9   0.0       3.9     5e+03      14      26 ..     276     288 ..     271     308 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.1e-05
  Methyltransf_16  43 nelsklsvlELGsGtGlvGlavaellpeakviltDleelle 83 
                      ++ +  +vl++G G+G+  + +a + p+a+v+ tDl+  ++
       CCE28845.1 103 EKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQP 143
                      5667789*****************************98654 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.9
  Methyltransf_16  14 gesigrkvWdaav 26 
                        ++gr  W+aa 
       CCE28845.1 276 LAEVGRMAWEAAD 288
                      5578888898885 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.2e-05     0.041      24      58 ..     105     139 ..      96     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.2e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 ++ +rvL++++G+G  A+ fA ++pn+    +d  
  CCE28845.1 105 DKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 139
                 45569**********************99988865 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.5e-05      0.12       5      33 ..     110     138 ..     106     142 .. 0.91
   2 ?   -3.0   0.1       3.3   4.3e+03      77      89 ..     262     275 ..     259     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28845.1 110 VLDVGTGSGIWAIEFADQFPNASVVGTDL 138
                     89***********************9875 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.3
                     EEES-.----SGGG CS
  Methyltransf_4  77 filFP.DPwfKkrh 89 
                     +  FP  Pw K r+
      CCE28845.1 262 QYKFPiGPWAKDRK 275
                     5567745****998 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017      0.22      71     104 ..     104     136 ..      93     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
                 --TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEE CS
        PCMT  71 lkkgarvLevGsGsGyltavlarlvgekgrvvsi 104
                  +k  rvL+vG+GsG+ +  +a  + +   vv+ 
  CCE28845.1 104 KDKIHRVLDVGTGSGIWAIEFADQFPNAS-VVGT 136
                 57789*************99998876665.6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2533.40
//
Query:       CCE28846.1  [L=316]
Description: uncharacterized protein CPUR_02535 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-17   62.2   0.0    8.3e-17   61.5   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.2e-11   45.2   0.0    4.7e-11   43.2   0.0    2.1  2  Methyltransf_25  Methyltransferase domain
    5.3e-10   39.8   0.1    5.7e-09   36.5   0.0    2.4  2  Methyltransf_11  Methyltransferase domain
    5.1e-06   27.1   0.0    6.4e-05   23.6   0.0    2.6  2  Methyltransf_12  Methyltransferase domain
    4.6e-05   23.3   0.0      0.053   13.3   0.0    2.4  2  Methyltransf_31  Methyltransferase domain
     0.0002   21.0   0.0    0.00042   19.9   0.0    1.5  1  MTS              Methyltransferase small domain
     0.0074   16.4   0.0       0.12   12.5   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.019   14.7   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.016   14.6   0.0      0.029   13.8   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.031   13.6   0.0      0.063   12.6   0.0    1.5  1  Methyltransf_2   O-methyltransferase domain
      0.044   13.1   0.0      0.071   12.4   0.0    1.4  1  CMAS             Mycolic acid cyclopropane synthetase
       0.11   11.9   0.0       0.19   11.2   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
       0.13   12.0   0.0       0.25   11.1   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
       0.17   11.2   0.0        1.9    7.8   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   6.5e-20   8.3e-17      15     126 ..      99     212 ..      78     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 6.5e-20
  Methyltransf_23  15 rllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrq 104
                      +l+p  +++  rvLd+G+G Gi++ ++++++   sv+g Dlsp +  +++ +  + ++d +   e++ + ++fd++++r+  + ++d+ +l++ 
       CCE28846.1  99 FLAPLeKDKMHRVLDVGTGFGIWAIEFADQFPnaSVVGTDLSPCQPRWVPpNLEFEIDDAT--LEWTWDTNHFDFVHMRYIVGGIQDWGALFKE 190
                      45553234444*******************8777**********99998554444444444..46667999*********************** PP

  Methyltransf_23 105 iatllkpgGylllseplaslke 126
                      + +++ pgG+++  e++++  +
       CCE28846.1 191 ASRCCTPGGWVESIEYDVEFRS 212
                      *************999987643 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       9.1   1.2e+04      55      72 ..      22      40 ..      13      50 .. 0.73
   2 !   43.2   0.0   3.7e-14   4.7e-11       1      97 []     111     199 ..     111     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 9.1
                     CCGBSSSTT.TEEEEEEES CS
  Methyltransf_25 55 aedlpfedg.sfDlvvssg 72
                     aed+p +d+ ++D v+s+ 
       CCE28846.1 22 AEDIPVNDQdEIDSVFSQD 40
                     5778865544888888854 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 3.7e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G G +++++a+++++a+v+g+D+s+ + + +         n+ef+  da  ++  + ++fD+v++++ +     +d+ +++ke++r++
       CCE28846.1 111 VLDVGTGFGIWAIEFADQFPNASVVGTDLSPCQPRWVPP-------NLEFEIDDAtLEWTWDTNHFDFVHMRYIVGG--IQDWGALFKEASRCC 195
                      9******************99**********99876544.......669*****977899***********866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      +pgG
       CCE28846.1 196 TPGG 199
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.96   1.2e+03      50      69 ..      20      40 ..       1      53 [. 0.76
   2 !   36.5   0.0   4.5e-12   5.7e-09       1      94 [.     112     201 ..     112     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.96
                     EECCCTSS-T.T-EEEEEEES CS
  Methyltransf_11 50 adaeklpfed.nsfDlvvsse 69
                       ae++p++d + +D v+s+ 
       CCE28846.1 20 IAAEDIPVNDqDEIDSVFSQD 40
                     568999*999569****9985 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 4.5e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G G+ a ++a+++  a+vvg+Dls+ + +++      ++  +ef   da+ +     n fD+v ++  +  ++d+ +++ke+ R++ pg
       CCE28846.1 112 LDVGTGFGIWAIEFADQFpnASVVGTDLSPCQPRWVP-----PN--LEFEIDDATlEWTWDTNHFDFVHMRYIVGGIQDWGALFKEASRCCTPG 198
                      8**************9999*************98883.....33..566666666346899********************************* PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28846.1 199 GWV 201
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.4   5.6e+03      64      78 ..      33      54 ..       3      83 .. 0.61
   2 !   23.6   0.0     5e-08   6.4e-05       1      99 []     112     201 ..     112     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.4
  Methyltransf_12 64 g.......ssfDlvvasnvlhh 78
                             +s  + +as+vl++
       CCE28846.1 33 IdsvfsqdQSSTTSIASSVLEY 54
                     3333333334444555555555 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 5e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G G  + ++++++p+++++g+D+sp +       l +++++ + +++++++         +fD v++   +  ++d+ ++++++ ++++
       CCE28846.1 112 LDVGTGFGIWAIEFADQFPNASVVGTDLSPCQPRWVPPNLEFEIDDATLEWTWDTN---------HFDFVHMRYIVGGIQDWGALFKEASRCCT 196
                      8********************************66666666666666666666654.........7**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28846.1 197 PGGWV 201
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   4.1e-05     0.053       2      38 ..     106     141 ..     105     143 .. 0.90
   2 !    7.6   0.0    0.0024         3      55     113 ..     150     207 ..     147     265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.1e-05
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                      dk  rvlD+G+G G  ++e+a   +p+a vvG D s+
       CCE28846.1 106 DKMHRVLDVGTGFGIWAIEFA-DQFPNASVVGTDLSP 141
                      56679****************.669*********987 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0024
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      n+eFe+ d++      +  + fD+++ + ++  + d  + ++e++r  +pgg + + +++
       CCE28846.1 150 NLEFEIDDATLeWT--WDTNHFDFVHMRYIVGGIQDWGALFKEASRCCTPGGWVESIEYD 207
                      899*****999444..999*********************************88777777 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.3e-07   0.00042      21      64 ..      97     140 ..      93     151 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.3e-07
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G+G+ ++++a++ p+a+v+ +d +
  CCE28846.1  97 QLFLAPLEKDKMHRVLDVGTGFGIWAIEFADQFPNASVVGTDLS 140
                 789999********************************999976 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   9.3e-05      0.12      21      72 ..     107     160 ..      75     174 .. 0.83
   2 ?    1.7   0.0      0.19   2.5e+02      29      39 ..     194     204 ..     191     264 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.3e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCC CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditd 72 
                 + ++v+D+g + G w+   + ++ + + vv+ Dl p++p+   p++++   d t 
  CCE28846.1 107 KMHRVLDVGTGFGIWAIEFADQFPN-ASVVGTDLSPCQPRwvpPNLEFEIDDATL 160
                 5689***********9999999875.9***********99888888887777665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.19
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++ PGgw + +
  CCE28846.1 194 CCTPGGWVESI 204
                 9******9877 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.5e-05     0.019      29      91 ..      87     153 ..      80     178 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
  Methyltransf_16  29 vkylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDleelle.llkkniel 91 
                       +yl+  l ++    + ++ +  +vl++G G G+  + +a + p+a+v+ tDl+  ++  +  n+e 
       CCE28846.1  87 HHYLTILLDDQlflAPLEKDKMHRVLDVGTGFGIWAIEFADQFPNASVVGTDLSPCQPrWVPPNLEF 153
                      566666665556666667888999*****************************98665245566665 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.3e-05     0.029     161     195 ..     107     142 ..      87     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
        PrmA 161 egeevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                 + ++vlDvGtG Gi ai  a ++  ++vv++D+ + 
  CCE28846.1 107 KMHRVLDVGTGFGIWAIEfADQFPNASVVGTDLSPC 142
                 4579*************747799*********9885 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.9e-05     0.063      17      95 ..      54     140 ..      41     145 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
                     HHHHHS--....HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGis....lfeaikrdeeerakf..nkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +++++G++     f+a++  ++ +++    +  ++  ++  ++ l        ++++++DvG G G  a + + ++P+ +v+  Dl+
      CCE28846.1  54 YRQIHGRTyhsdKFTANYFLPNDDQQLetEEICHHYLTILLDDQLFLAPleKDKMHRVLDVGTGFGIWAIEFADQFPNASVVGTDLS 140
                     44444444333377777765555554410445555666677776655551156799************************9999985 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.5e-05     0.071      58     101 ..     103     147 ..      77     172 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.5e-05
                 TT--TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHH CS
        CMAS  58 lelkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqakla 101
                 le ++ +++Ld+G+G+G  +++ ++++ +++vvg  lS  q +++
  CCE28846.1 103 LEKDKMHRVLDVGTGFGIWAIEFADQFpNASVVGTDLSPCQPRWV 147
                 55566679******************9789********9988776 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015      0.19       5      33 ..     111     139 ..     107     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G G + ++ A ++P+ +++G ++
      CCE28846.1 111 VLDVGTGFGIWAIEFADQFPNASVVGTDL 139
                     89***********************9875 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0002      0.25      24      58 ..     106     140 ..      97     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 ++ +rvL++++G G  A+ fA ++pn+    +d  
  CCE28846.1 106 DKMHRVLDVGTGFGIWAIEFADQFPNASVVGTDLS 140
                 45569*********************999988865 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0015       1.9      50     154 ..     110     206 ..      99     211 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0015
                      EEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE-.-TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHH CS
  Ubie_methyltran  50 kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqa.naeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrv 142
                      +vlDv +G g +a++++d+   +  vv+ D+++   +            n+ef     + e   + + fD+v + + +  + D    +kea r 
       CCE28846.1 110 RVLDVGTGFGIWAIEFADQFP-NASVVGTDLSPCQPRWV--------PPNLEFEIDdATLEWTWDTNHFDFVHMRYIVGGIQDWGALFKEASRC 194
                      677777777777777777764.44677777666432222........22444433303456667779999999999999999999999999999 PP

                      EEEEEEEEEEEE CS
  Ubie_methyltran 143 lkpGGrlvvlef 154
                        pGG +  +e+
       CCE28846.1 195 CTPGGWVESIEY 206
                      999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2223.40
//
Query:       CCE28847.1  [L=340]
Description: uncharacterized protein CPUR_02536 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-20   71.4   0.0    1.1e-19   70.9   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.6e-11   44.7   0.0    4.7e-11   43.2   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    3.5e-10   40.4   0.0    1.4e-09   38.4   0.0    2.0  2  Methyltransf_11  Methyltransferase domain
    1.8e-07   31.8   0.0    1.6e-06   28.7   0.0    2.4  2  Methyltransf_12  Methyltransferase domain
    3.3e-05   23.7   0.0     0.0081   16.0   0.0    2.4  2  Methyltransf_31  Methyltransferase domain
    0.00025   20.6   0.0    0.00053   19.6   0.0    1.4  1  MTS              Methyltransferase small domain
    0.00056   19.4   0.0     0.0012   18.3   0.0    1.5  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0023   18.1   0.0       0.14   12.3   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
     0.0073   15.7   0.0        1.8    7.8   0.0    2.1  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.019   14.7   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.014   14.7   0.0      0.041   13.2   0.0    1.7  2  Methyltransf_2   O-methyltransferase domain
      0.019   14.8   0.0      0.035   13.9   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
      0.036   13.8   0.0      0.063   13.0   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.06   12.8   0.0       0.12   11.9   0.0    1.4  1  Methyltransf_4   Putative methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   8.6e-23   1.1e-19      15     126 ..      98     211 ..      76     254 .. 0.79

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 8.6e-23
  Methyltransf_23  15 rllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrq 104
                      +l+p  +++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   e++ + ++fd+I++r+  + ++d+++l++ 
       CCE28847.1  98 FLSPLeKDKVHRVLDVGTGSGIWAIEFADQFPnaSVVGTDLSPCQPQWVPpNLCFEIDDAT--LEWTWNTNHFDFIHMRYIVGGIEDWAALFKE 189
                      34443245666*******************8777*************98532222222222..46667999*********************** PP

  Methyltransf_23 105 iatllkpgGylllseplaslke 126
                      ++++++pgG+++  e++++  +
       CCE28847.1 190 AYRCCAPGGWVESVEYDVEFRS 211
                      ***************9988744 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   3.7e-14   4.7e-11       1      97 []     110     198 ..     110     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 3.7e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  + ++fD++++++ +  +  ed+++++ke++r++
       CCE28847.1 110 VLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPQWVPP-------NLCFEIDDAtLEWTWNTNHFDFIHMRYIVGGI--EDWAALFKEAYRCC 194
                      9******************99**********99887655.......558999999778999**********8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28847.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1         7     9e+03      53      69 ..      22      39 ..      18      52 .. 0.78
   2 !   38.4   0.0   1.1e-12   1.4e-09       1      94 [.     111     200 ..     111     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 7
                     CCTSS-T.T-EEEEEEES CS
  Methyltransf_11 53 eklpfed.nsfDlvvsse 69
                     e++p++d + +D v+s  
       CCE28847.1 22 EDVPVNDqDEIDSVFSED 39
                     678888855999999875 PP

  == domain 2  score: 38.4 bits;  conditional E-value: 1.1e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+vvg+Dls+ + +++  +         f   da+ +   + n fD++ ++  +  +ed+++++ke++R++ pg
       CCE28847.1 111 LDVGTGSGIWAIEFADQFpnASVVGTDLSPCQPQWVPPNL-------CFEIDDATlEWTWNTNHFDFIHMRYIVGGIEDWAALFKEAYRCCAPG 197
                      8**************9999**************9983333.......3333444423589********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28847.1 198 GWV 200
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       4.9   6.3e+03      29      44 ..      47      62 ..      16      90 .. 0.59
   2 !   28.7   0.0   1.3e-09   1.6e-06       1      99 []     111     200 ..     111     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4.9
  Methyltransf_12 29 spsaiedakeklakre 44
                      +s++e ++ + + ++
       CCE28847.1 47 ASSVLEYRQSHGRTYH 62
                     3333333444444444 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 1.3e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     l +++++ + ++++++         ++fD +++   +  ++d+++++++++++++
       CCE28847.1 111 LDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPQWVPPNLCFEIDDATLEWTWNT---------NHFDFIHMRYIVGGIEDWAALFKEAYRCCA 195
                      8********************************6666666666666655555554.........48**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28847.1 196 PGGWV 200
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.4e-06    0.0081       3      38 ..     106     140 ..     104     142 .. 0.89
   2 ?    5.4   0.0     0.011        14      55     113 ..     149     206 ..     146     259 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.4e-06
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                      k  rvlD+G+G+G  ++e+a   +p+a vvG D s+
       CCE28847.1 106 KVHRVLDVGTGSGIWAIEFA-DQFPNASVVGTDLSP 140
                      5569****************.669*********987 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.011
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      n+ Fe+ d++      ++ + fD+i+ + ++  + d ++ ++e+ r   pgg + + +++
       CCE28847.1 149 NLCFEIDDATLeWT--WNTNHFDFIHMRYIVGGIEDWAALFKEAYRCCAPGGWVESVEYD 206
                      56678888877333..999********************************987666666 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.2e-07   0.00053      21      64 ..      96     139 ..      93     142 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.2e-07
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l+ l+k++ ++vlD+G+G G+ ++++a++ p+a+v+ +d +
  CCE28847.1  96 QLFLSPLEKDKVHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 139
                 799***********************************999976 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   9.5e-07    0.0012     161     194 ..     106     140 ..      92     151 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 9.5e-07
        PrmA 161 egeevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                 + ++vlDvGtGSGi ai  a ++  ++vv++D+ +
  CCE28847.1 106 KVHRVLDVGTGSGIWAIEfADQFPNASVVGTDLSP 140
                 3469*************7477999********987 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00011      0.14      20      70 ..     105     157 ..      88     171 .. 0.80
   2 ?    3.4   0.0     0.056        71      29      39 ..     193     203 ..     191     226 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                 -TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 +++++v+D+g + G w+   + ++ + + vv+ Dl p++p    p++ +   d 
  CCE28847.1 105 DKVHRVLDVGTGSGIWAIEFADQFPN-ASVVGTDLSPCQPQwvpPNLCFEIDDA 157
                 37899***********9999999875.9**********9877766666655555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.056
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28847.1 193 CCAPGGWVESV 203
                 9******9876 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0069       8.9      48      81 ..     107     139 ..      97     144 .. 0.81
   2 !    7.8   0.0    0.0014       1.8     112     154 ..     163     205 ..     151     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0069
                      TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  48 gakvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                       ++vlDv +G+g +a++++d+  +   vv+ D++
       CCE28847.1 107 VHRVLDVGTGSGIWAIEFADQFPN-ASVVGTDLS 139
                      4689***************99754.567777776 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0014
                      TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 112 feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       + + fD++ + + +  + D    +keayr   pGG +  +e+
       CCE28847.1 163 WNTNHFDFIHMRYIVGGIEDWAALFKEAYRCCAPGGWVESVEY 205
                      56789********************************999986 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.5e-05     0.019      29      82 ..      86     142 ..      79     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
  Methyltransf_16  29 vkylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                       +yl+  l ++   ++ ++ +  +vl++G G+G+  + +a + p+a+v+ tDl+  +
       CCE28847.1  86 HHYLTILLDDQlflSPLEKDKVHRVLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQ 142
                      566666655557766667888899****************************98765 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.2e-05     0.041      18      95 ..      54     139 ..      42     144 .. 0.68
   2 ?   -2.2   0.0       1.6   2.1e+03     146     172 ..     184     210 ..     179     220 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-05
                     HHHHS--....HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-GG..G-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  18 kkafGis....lfeaikrdeeerakf..nkglqessslvakkvleafdle..glkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     ++ +G++     f a++  ++ +++    ++ ++  ++  ++ l  + le  ++++++DvG G+G  a + + ++P+ +v+  Dl+
      CCE28847.1  54 RQSHGRTyhsdRFAANYFIPNDDQQLesEELCHHYLTILLDDQLFLSPLEkdKVHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 139
                     4444444333366666654444444311455566667777777666665422799************************9999985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
                     HHHHHHHHHH--TT-EEEEEE----TT CS
  Methyltransf_2 146 vklLkrvkkalpagGkvivveavlgad 172
                     + l k+ ++ + +gG v  ve  ++ +
      CCE28847.1 184 AALFKEAYRCCAPGGWVESVEYDVEFR 210
                     5789999999*9999998888766555 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.7e-05     0.035      24      58 ..     105     139 ..      96     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 ++ +rvL++++G+G  A+ fA ++pn+    +d  
  CCE28847.1 105 DKVHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 139
                 45569**********************99988865 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     5e-05     0.063      68     104 ..     101     136 ..      87     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5e-05
                 HTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEE CS
        PCMT  68 llelkkgarvLevGsGsGyltavlarlvgekgrvvsi 104
                  le +k+ rvL+vG+GsG+ +  +a  + +   vv+ 
  CCE28847.1 101 PLEKDKVHRVLDVGTGSGIWAIEFADQFPNAS-VVGT 136
                 5677899**************99998876665.6665 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.1e-05      0.12       5      33 ..     110     138 ..     106     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.1e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28847.1 110 VLDVGTGSGIWAIEFADQFPNASVVGTDL 138
                     89***********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2520.57
//
Query:       CCE28848.1  [L=77]
Description: uncharacterized protein CPUR_02537 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 599.72
//
Query:       CCE28849.1  [L=340]
Description: uncharacterized protein CPUR_02538 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-17   63.6   0.0    2.9e-17   63.0   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      6e-11   42.9   0.0    1.8e-10   41.4   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    1.2e-08   35.4   0.0    4.6e-08   33.6   0.0    1.9  2  Methyltransf_11  Methyltransferase domain
      4e-07   30.7   0.0    3.5e-06   27.7   0.0    2.4  1  Methyltransf_12  Methyltransferase domain
     0.0009   19.1   0.0      0.077   12.8   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
     0.0013   18.3   0.0     0.0024   17.4   0.0    1.3  1  MTS              Methyltransferase small domain
     0.0085   16.2   0.0       0.78    9.8   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.022   14.1   0.0      0.057   12.7   0.0    1.6  2  Methyltransf_2   O-methyltransferase domain
      0.027   13.8   0.0      0.057   12.8   0.0    1.5  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.044   13.3   0.0      0.086   12.3   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.061   13.1   0.0       0.11   12.3   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
      0.065   12.5   0.0       0.11   11.8   0.0    1.4  1  CMAS             Mycolic acid cyclopropane synthetase
      0.085   13.0   0.0       0.16   12.1   0.0    1.4  1  DUF3240          Protein of unknown function (DUF3240)
       0.14   11.9   0.0       0.23   11.2   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
       0.14   11.4   0.0        4.2    6.6   0.0    2.1  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   2.4e-20   2.9e-17      11     123 ..      94     208 ..      80     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 2.4e-20
  Methyltransf_23  11 dklerllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp 99 
                      d +++l+p l++++  rvLd+G+G Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   +++ + ++fd+I++r+  + ++d++
       CCE28849.1  94 DDRLFLAP-LEKDKihRVLDVGTGFGIWAIEFADQFPnaSVIGTDLSPCQPQWVPpNLCFEIDDAT--LDWTWNPNHFDFIHMRYIVGGIEDWT 184
                      56677777.4444456*******************87779**********9998542222222222..35557999****************** PP

  Methyltransf_23 100 ellrqiatllkpgGylllseplas 123
                      +l+  ++++++pgG+++ +e+  +
       CCE28849.1 185 ALFEEVYRCCAPGGWVESLEYEPE 208
                      ******************998655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   1.5e-13   1.8e-10       1      97 []     110     198 ..     110     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.5e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  d+  + ++fD++++++ +  +  ed+ ++++e++r++
       CCE28849.1 110 VLDVGTGFGIWAIEFADQFPNASVIGTDLSPCQPQWVPP-------NLCFEIDDAtLDWTWNPNHFDFIHMRYIVGGI--EDWTALFEEVYRCC 194
                      9******************99**********99887655.......55899999978899***********8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28849.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       7.7   9.2e+03      52      69 ..      21      39 ..      17      50 .. 0.82
   2 !   33.6   0.0   3.8e-11   4.6e-08       1      94 [.     111     200 ..     111     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 7.7
                     CCCTSS-T.T-EEEEEEES CS
  Methyltransf_11 52 aeklpfed.nsfDlvvsse 69
                     ae++p++d + +D ++s  
       CCE28849.1 21 AEDVPVNDqDEIDSIFSED 39
                     7899999955999999865 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 3.8e-11
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G G+ a ++a+++  a+v+g+Dls+ + +++  +       + f   da+ +   + n fD++ ++  +  +ed+ ++++e++R++ pg
       CCE28849.1 111 LDVGTGFGIWAIEFADQFpnASVIGTDLSPCQPQWVPPN-------LCFEIDDATlDWTWNPNHFDFIHMRYIVGGIEDWTALFEEVYRCCAPG 197
                      8**************9999*************9988333.......444455555456899********************************* PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28849.1 198 GWV 200
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   2.9e-09   3.5e-06       1      99 []     111     200 ..     111     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 2.9e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G G  + ++++++p+++++g+D+sp + +     l         ++e+++  l+ +  +++fD +++   +  ++d+ +++++++++++
       CCE28849.1 111 LDVGTGFGIWAIEFADQFPNASVIGTDLSPCQPQWVPPNL---------CFEIDDATLDWTWNPNHFDFIHMRYIVGGIEDWTALFEEVYRCCA 195
                      8********************************4444444.........44444444444444469**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28849.1 196 PGGWV 200
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   6.4e-05     0.077       5      38 ..     108     140 ..     104     142 .. 0.90
   2 ?    3.9   0.0     0.035        42      55     106 ..     149     199 ..     146     228 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.4e-05
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G G  ++e+a   +p+a v+G D s+
       CCE28849.1 108 HRVLDVGTGFGIWAIEFA-DQFPNASVIGTDLSP 140
                      68****************.669*********987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.035
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggi 106
                      n+ Fe+ d++      ++++ fD+i+ + ++  + d  + +ee+ r   pgg 
       CCE28849.1 149 NLCFEIDDATLdWT--WNPNHFDFIHMRYIVGGIEDWTALFEEVYRCCAPGGW 199
                      56677777777566..999****************************999996 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     2e-06    0.0024      21      63 ..      96     138 ..      93     141 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +l+l  l+k++ ++vlD+G+G+G+ ++++a++ p+a+v  +d 
  CCE28849.1  96 RLFLAPLEKDKIHRVLDVGTGFGIWAIEFADQFPNASVIGTDL 138
                 689999****9999**********************9998886 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00065      0.78      21      65 ..     106     152 ..      80     165 .. 0.82
   2 ?    4.1   0.0     0.037        44      29      39 ..     193     203 ..     187     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00065
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEE CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvtt 65 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p++ +
  CCE28849.1 106 KIHRVLDVGTGFGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNLCF 152
                 6799***********9999999875.9**********98766566555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.037
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + l
  CCE28849.1 193 CCAPGGWVESL 203
                 *******9977 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.7e-05     0.057      17      95 ..      57     139 ..      43     148 .. 0.67
   2 ?   -2.3   0.0       1.8   2.2e+03     146     162 ..     184     200 ..     169     225 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.7e-05
                     HHHHHS--HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGislfeaikrdeeerakf..nkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     + +++    f+a++  ++ +++    ++ ++  ++  ++ l        ++++++DvG G G  a + + ++P+ +vi  Dl+
      CCE28849.1  57 HGRTYHSDKFTANYFLPNDDQQLgtEELCHHCLTILLDDRLFLAPleKDKIHRVLDVGTGFGIWAIEFADQFPNASVIGTDLS 139
                     333333346766666555444431144555555666666555544115689**************************999985 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
                     HHHHHHHHHH--TT-EE CS
  Methyltransf_2 146 vklLkrvkkalpagGkv 162
                     + l ++v++ + +gG v
      CCE28849.1 184 TALFEEVYRCCAPGGWV 200
                     57899999999999977 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.8e-05     0.057     160     194 ..     105     140 ..      80     149 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.8e-05
        PrmA 160 kegeevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  + ++vlDvGtG Gi ai  a ++  ++v+++D+ +
  CCE28849.1 105 DKIHRVLDVGTGFGIWAIEfADQFPNASVIGTDLSP 140
                 23369*************74779999*******987 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.2e-05     0.086       5      33 ..     110     138 ..     106     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.2e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G G + ++ A ++P+ +++G ++
      CCE28849.1 110 VLDVGTGFGIWAIEFADQFPNASVIGTDL 138
                     89************************876 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.9e-05      0.11      44      82 ..     104     142 ..      68     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.9e-05
  Methyltransf_16  44 elsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      + +  +vl++G G G+  + +a + p+a+vi tDl+  +
       CCE28849.1 104 KDKIHRVLDVGTGFGIWAIEFADQFPNASVIGTDLSPCQ 142
                      566789****************************99765 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.8e-05      0.11      61     101 ..     105     146 ..      94     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.8e-05
                 -TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHH CS
        CMAS  61 kpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqakla 101
                 ++ +++Ld+G+G+G  +++ ++++ +++v+g  lS  q +++
  CCE28849.1 105 DKIHRVLDVGTGFGIWAIEFADQFpNASVIGTDLSPCQPQWV 146
                 55679******************9789********9887775 PP

>> DUF3240  Protein of unknown function (DUF3240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014      0.16      44      91 ..     281     328 ..     278     336 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
     DUF3240  44 evslatiaEkvrGradkvvveivleeaalerllaeLrkavaktkvrYw 91 
                 +v+++t++   +G+ ++   +i+ +e++++  la+Lrka+ ++kv+ +
  CCE28849.1 281 RVARETMEHDLEGYTQMLWKSIQKPEDEYHVWLAALRKAMRNSKVHSY 328
                 68999999************************************9854 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00019      0.23      24      59 ..     105     140 ..      98     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G G  A+ fA ++pn+  + +d  +
  CCE28849.1 105 DKIHRVLDVGTGFGIWAIEFADQFPNASVIGTDLSP 140
                 44569**********************999999765 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.067        80      49      81 ..     108     139 ..      97     142 .. 0.79
   2 ?    6.6   0.0    0.0035       4.2     114     154 ..     165     205 ..     154     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.067
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++vlDv +G g +a++++d+  +   v++ D++
       CCE28849.1 108 HRVLDVGTGFGIWAIEFADQFPN-ASVIGTDLS 139
                      589***************98754.456666665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0035
                      -T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 114 ddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       + fD++ + + +  + D +  ++e+yr   pGG +  le+
       CCE28849.1 165 PNHFDFIHMRYIVGGIEDWTALFEEVYRCCAPGGWVESLEY 205
                      5789*********************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2505.05
//
Query:       CCE28850.1  [L=275]
Description: uncharacterized protein CPUR_02539 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-16   59.0   0.0    6.6e-16   58.6   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    9.1e-12   45.5   0.0    2.8e-11   44.0   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    8.8e-10   39.1   0.0    3.5e-09   37.2   0.0    2.0  2  Methyltransf_11  Methyltransferase domain
    1.9e-07   31.7   0.0      2e-06   28.5   0.0    2.4  2  Methyltransf_12  Methyltransferase domain
    0.00017   21.4   0.0      0.065   13.0   0.0    2.4  2  Methyltransf_31  Methyltransferase domain
    0.00035   20.2   0.0    0.00068   19.2   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0073   16.4   0.1       0.34   11.0   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
     0.0077   15.6   0.0      0.026   13.8   0.0    1.7  1  CMAS             Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.025   14.0   0.0    1.5  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.035   13.4   0.0       0.06   12.6   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
      0.079   12.7   0.0       0.12   12.1   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.095   12.2   0.0       0.17   11.3   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
       0.14   11.9   0.0       0.29   10.8   0.0    1.5  1  DUF938           Protein of unknown function (DUF938)


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   4.8e-19   6.6e-16      11     116 ..      94     201 ..      80     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 4.8e-19
  Methyltransf_23  11 dklerllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp 99 
                      d +++l+p l++++  rvLd+G+G Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   +++ ++++fd+I++r   + ++d++
       CCE28850.1  94 DDRLFLAP-LEKDKihRVLDVGTGFGIWAIEFADQFPnaSVVGTDLSPCQPQWVPpNLCFEIDDAT--LDWTWNANHFDFIHMRCIVGGIEDWT 184
                      56677777.4444456*******************8777*************98542222222222..46667********************* PP

  Methyltransf_23 100 ellrqiatllkpgGyll 116
                      + ++ ++++++pgG++ 
       CCE28850.1 185 AFFKEAYRCCAPGGWVP 201
                      ***************85 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0     2e-14   2.8e-11       1      97 []     110     198 ..     110     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 2e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEEST.GGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssga.lhhlsdedlekalkeiarv 92 
                      vLd+G+G G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  d+  ++++fD+++++ + +  +  ed+ +++ke++r+
       CCE28850.1 110 VLDVGTGFGIWAIEFADQFPNASVVGTDLSPCQPQWVPP-------NLCFEIDDAtLDWTWNANHFDFIHMR-CiVGGI--EDWTAFFKEAYRC 193
                      9******************99**********99887655.......5589999997889************5.734445..69*********** PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      + pgG
       CCE28850.1 194 CAPGG 198
                      ****9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.8   5.3e+03      52      69 ..      21      39 ..       7      52 .. 0.82
   2 !   37.2   0.0   2.6e-12   3.5e-09       1      94 [.     111     200 ..     111     202 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.8
                     CCCTSS-T.T-EEEEEEES CS
  Methyltransf_11 52 aeklpfed.nsfDlvvsse 69
                     ae++p++d + +D ++s  
       CCE28850.1 21 AENIPVNDqDEIDSIFSED 39
                     7889999955999999865 PP

  == domain 2  score: 37.2 bits;  conditional E-value: 2.6e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G G+ a ++a+++  a+vvg+Dls+ + +++  +       + f   da+ +   + n fD++ ++  +  +ed+ +++ke++R++ pg
       CCE28850.1 111 LDVGTGFGIWAIEFADQFpnASVVGTDLSPCQPQWVPPN-------LCFEIDDATlDWTWNANHFDFIHMRCIVGGIEDWTAFFKEAYRCCAPG 197
                      8**************9999*************9988333.......44445555545689********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28850.1 198 GWV 200
                      *86 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.9   9.5e+03      53      78 ..      29      53 ..      19      63 .. 0.59
   2 !   28.5   0.0   1.4e-09     2e-06       1      99 []     111     200 ..     111     200 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.9
  Methyltransf_12 53 lealdlldldggssfDlvvasnvlhh 78
                      +++d++ +++ +s  + +as+vl++
       CCE28850.1 29 QDEIDSIFSED-KSSTTSIASSVLEY 53
                     33333333333.46666777888877 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 1.4e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G G  + ++++++p+++++g+D+sp + +     l +++++ +  ++++a         ++fD +++ + +  ++d+ +++++++++++
       CCE28850.1 111 LDVGTGFGIWAIEFADQFPNASVVGTDLSPCQPQWVPPNLCFEIDDATLDWTWNA---------NHFDFIHMRCIVGGIEDWTAFFKEAYRCCA 195
                      8********************************5555555555555544444444.........58**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28850.1 196 PGGWV 200
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   4.7e-05     0.065       5      38 ..     108     140 ..     104     142 .. 0.89
   2 !    6.0   0.0     0.007       9.7      55     107 ..     149     200 ..     146     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.7e-05
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G G  ++e+a   +p+a vvG D s+
       CCE28850.1 108 HRVLDVGTGFGIWAIEFA-DQFPNASVVGTDLSP 140
                      68****************.669*********987 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.007
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      n+ Fe+ d++      ++ + fD+i+ ++++  + d  ++++e+ r   pgg +
       CCE28850.1 149 NLCFEIDDATLdWT--WNANHFDFIHMRCIVGGIEDWTAFFKEAYRCCAPGGWV 200
                      55677777777555..889******************************99965 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.9e-07   0.00068      21      64 ..      96     139 ..      93     142 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4.9e-07
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G+G+ ++++a++ p+a+v+ +d +
  CCE28850.1  96 RLFLAPLEKDKIHRVLDVGTGFGIWAIEFADQFPNASVVGTDLS 139
                 689999****9999************************999976 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00024      0.34      21      65 ..     106     152 ..      75     170 .. 0.82
   2 ?    3.5   0.0     0.051        70      29      38 ..     193     202 ..     191     265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00024
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEE CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvtt 65 
                 + ++v+D+g + G w+   + ++ + + vv+ Dl p++p    p++ +
  CCE28850.1 106 KIHRVLDVGTGFGIWAIEFADQFPN-ASVVGTDLSPCQPQwvpPNLCF 152
                 6799***********9999999875.9**********98766666655 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.051
                 T-TTSHHHHH CS
        FtsJ  29 gaaPGgwsqv 38 
                 ++aPGgw  v
  CCE28850.1 193 CCAPGGWVPV 202
                 9******977 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.9e-05     0.026      61     161 ..     105     199 ..      95     204 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-05
                 -TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHH.HTS-SSS-EEEEES-GGG-----SEEEEES-GGGT.SGGGHHHHHHHHHHHS CS
        CMAS  61 kpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrv.deldlerkvevklldyedldekvdrvvsvgafehv.gkenydtffkklkkll 156
                 ++ +++Ld+G+G+G  +++ ++++ +++vvg  lS  q +++  ++  e+d         ld+   ++++d +    +   v g e + +ffk++++  
  CCE28850.1 105 DKIHRVLDVGTGFGIWAIEFADQFpNASVVGTDLSPCQPQWVPPNLcFEID------DATLDWTWNANHFDFIHMRCI---VgGIEDWTAFFKEAYRCC 194
                 55679******************9789*********999988654403333......234566666666666543322...225677777777777777 PP

                 -TT-E CS
        CMAS 157 kedGl 161
                  ++G 
  CCE28850.1 195 APGGW 199
                 77765 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.5   3.5e+03      53      69 ..      27      43 ..      15      63 .. 0.53
   2 ?   14.0   0.0   1.8e-05     0.025     160     194 ..     105     140 ..      80     149 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.5
        PrmA 53 keevkvkalfkeeteak 69
                +++ +++++f+e+++ +
  CCE28850.1 27 NDQDEIDSIFSEDKSST 43
                34444444444443333 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.8e-05
        PrmA 160 kegeevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  + ++vlDvGtG Gi ai  a ++  ++vv++D+ +
  CCE28850.1 105 DKIHRVLDVGTGFGIWAIEfADQFPNASVVGTDLSP 140
                 33369*************7477999********987 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.3e-05      0.06      17      95 ..      57     139 ..      43     144 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.3e-05
                     HHHHHS--HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGislfeaikrdeeerakf..nkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     + +++    f+a++  ++ +++    ++ ++  ++  ++ l        ++++++DvG G G  a + + ++P+ +v+  Dl+
      CCE28850.1  57 HGRTYHSDKFTANYFLPNDDQQLgtEELCHHCLTILLDDRLFLAPleKDKIHRVLDVGTGFGIWAIEFADQFPNASVVGTDLS 139
                     333444446776666555544431144555556666666555554115689*************************9999985 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     9e-05      0.12      43      82 ..     103     142 ..      67     167 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9e-05
  Methyltransf_16  43 nelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      ++ +  +vl++G G G+  + +a + p+a+v+ tDl+  +
       CCE28850.1 103 EKDKIHRVLDVGTGFGIWAIEFADQFPNASVVGTDLSPCQ 142
                      4566789****************************98765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.17       5      33 ..     110     138 ..     106     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G G + ++ A ++P+ +++G ++
      CCE28850.1 110 VLDVGTGFGIWAIEFADQFPNASVVGTDL 138
                     89***********************9875 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021      0.29      24      58 ..     105     139 ..      98     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 ++ +rvL++++G G  A+ fA ++pn+    +d  
  CCE28850.1 105 DKIHRVLDVGTGFGIWAIEFADQFPNASVVGTDLS 139
                 44569**********************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2120.49
//
Query:       CCE28851.1  [L=352]
Description: uncharacterized protein CPUR_02540 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-20   72.8   0.0    4.1e-20   72.3   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    6.8e-12   45.9   0.0    2.4e-11   44.2   0.0    2.0  2  Methyltransf_25  Methyltransferase domain
    4.5e-10   40.1   0.0    2.2e-09   37.8   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
    3.6e-07   30.8   0.0    4.4e-06   27.3   0.0    2.5  2  Methyltransf_12  Methyltransferase domain
     0.0003   20.6   0.0       0.01   15.7   0.0    2.4  3  Methyltransf_31  Methyltransferase domain
    0.00074   19.1   0.0     0.0014   18.2   0.0    1.4  1  MTS              Methyltransferase small domain
    0.00083   18.8   0.0     0.0014   18.1   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0017   18.5   0.0       0.12   12.5   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
     0.0032   16.8   0.0      0.006   15.9   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
     0.0036   16.7   0.0        0.7    9.2   0.0    2.1  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
       0.02   14.6   0.0      0.033   13.9   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.022   14.5   0.0      0.045   13.5   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
      0.072   12.6   0.0       0.13   11.7   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
      0.092   12.5   0.0       0.14   11.9   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   3.2e-23   4.1e-20      15     160 ..     116     273 ..      94     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 3.2e-23
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ ++ + ++d +   +++ ++++fd+I++r+  + ++d+++l++
       CCE28851.1 116 FLAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSVVGTDLSPCQPQWVPpNICFEIDDAT--LDWTWNANHFDFIHMRYIVGGIQDWTALFK 206
                      3444.4444456*******************8777**************9754444444444..67778************************* PP

  Methyltransf_23 104 qiatllkpgGylllseplasl........kedrllldwlylvpagrhi..sffsarslkelleeaGl 160
                       ++++++pgG+++ +e+  +          e  l+l+  + ++a++ +   +f  + l ++l eaG+
       CCE28851.1 207 EAYRCCAPGGWVESLEYEPEFfsddgsieLEPVLALYGDLFRKASEILdrPLFVKEILPRALDEAGF 273
                      ****************877666666665445555555666666666666666666666666666666 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       8.9   1.1e+04      72      88 ..      22      38 ..      11      47 .. 0.55
   2 !   44.2   0.0   1.9e-14   2.4e-11       1      97 []     128     216 ..     128     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.9
                     STGGGSSHHHHHHHHHH CS
  Methyltransf_25 72 galhhlsdedlekalke 88
                       lh+ ++++++ +++e
       CCE28851.1 22 EDLHVNDQDEIDSIFSE 38
                     34554444444444443 PP

  == domain 2  score: 44.2 bits;  conditional E-value: 1.9e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +        +n+ f+  da  d+  ++++fD++++++ +     +d+ +++ke++r++
       CCE28851.1 128 VLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPQWVP-------PNICFEIDDAtLDWTWNANHFDFIHMRYIVGG--IQDWTALFKEAYRCC 212
                      9******************99**********9987654.......4779999999788*************866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28851.1 213 APGG 216
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       2.9   3.7e+03      52      72 ..      21      42 ..       6      57 .. 0.79
   2 !   37.8   0.0   1.7e-12   2.2e-09       1      94 [.     129     218 ..     129     219 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.9
                     CCCTSS-T.T-EEEEEEES-CC CS
  Methyltransf_11 52 aeklpfed.nsfDlvvssevlh 72
                     ae+l ++d + +D ++s e+++
       CCE28851.1 21 AEDLHVNDqDEIDSIFSEECVN 42
                     6788888855999999998664 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 1.7e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+vvg+Dls+ + +++  +       + f   da+ +   + n fD++ ++  +  ++d+ +++ke++R++ pg
       CCE28851.1 129 LDVGTGSGIWAIEFADQFpnASVVGTDLSPCQPQWVPPN-------ICFEIDDATlDWTWNANHFDFIHMRYIVGGIQDWTALFKEAYRCCAPG 215
                      8**************9999**************999433.......44445555545689********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28851.1 216 GWV 218
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.3   6.7e+03      65      78 ..      58      71 ..      20     100 .. 0.65
   2 !   27.3   0.0   3.5e-09   4.4e-06       1      99 []     129     218 ..     129     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.3
  Methyltransf_12 65 ssfDlvvasnvlhh 78
                     +sf + vas+vl++
       CCE28851.1 58 KSFATSVASSVLEY 71
                     55556666666666 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 3.5e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     + +++++ +  ++++a         ++fD +++   +  ++d+ +++++++++++
       CCE28851.1 129 LDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPQWVPPNICFEIDDATLDWTWNA---------NHFDFIHMRYIVGGIQDWTALFKEAYRCCA 213
                      8********************************4444444444444444444443.........58**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28851.1 214 PGGWV 218
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.1   6.5e+03      70      86 ..      26      43 ..      16      70 .. 0.70
   2 !   15.7   0.0   7.8e-06      0.01       5      38 ..     126     158 ..     122     160 .. 0.90
   3 ?    2.2   0.0      0.11   1.4e+02      55     106 ..     167     217 ..     164     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.1
  Methyltransf_31 70 led.ekfDlilsnevlna 86
                     ++d + +D i+s e +n+
       CCE28851.1 26 VNDqDEIDSIFSEECVNL 43
                     444467788887766643 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 7.8e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a vvG D s+
       CCE28851.1 126 HRVLDVGTGSGIWAIEFA-DQFPNASVVGTDLSP 158
                      68****************.669*********987 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.11
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggi 106
                      n+ Fe+ d++      ++ + fD+i+ + ++  + d  + ++e+ r   pgg 
       CCE28851.1 167 NICFEIDDATLdWT--WNANHFDFIHMRYIVGGIQDWTALFKEAYRCCAPGGW 217
                      56677777777566..889******************9999999999999985 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.1e-06    0.0014      21      64 ..     114     157 ..     111     159 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.1e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v+ +d +
  CCE28851.1 114 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 157
                 689999****9999************************999975 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-06    0.0014     162     195 ..     125     159 ..     108     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                  ++vlDvGtGSGi ai  a ++  ++vv++D+ + 
  CCE28851.1 125 IHRVLDVGTGSGIWAIEfADQFPNASVVGTDLSPC 159
                 369*************747799*********9875 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     9e-05      0.12      21      70 ..     124     175 ..      97     188 .. 0.82
   2 ?    3.7   0.0     0.048        61      29      39 ..     211     221 ..     208     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 + ++v+D+g + G w+   + ++ + + vv+ Dl p++p    p++ +   d 
  CCE28851.1 124 KIHRVLDVGTGSGIWAIEFADQFPN-ASVVGTDLSPCQPQwvpPNICFEIDDA 175
                 6799***********9999999875.9**********9987777776655555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.048
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + l
  CCE28851.1 211 CCAPGGWVESL 221
                 *******9876 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.7e-06     0.006       6      95 ..      66     157 ..      61     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.7e-06
                     HHHHHTS--..HHHHHS--HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-GG..G-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2   6 davregrnqiifkkafGislfeaikrdeeerakf..nkglqessslvakkvleafdle..glkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                       v+e r   ++ +++    f+a++  ++ +++    ++ +++ ++  ++ l    le  ++++++DvG G+G  a + + ++P+ +v+  Dl+
      CCE28851.1  66 SSVLEYR--QMYGRTYHSDKFTANYFIPNDDQQLesEELCHHVLTILLDDQLFLAPLEkdKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 157
                     5566666..3688888888999998777666555115667778888888877766654228**************************9999985 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0085        11      49      81 ..     126     157 ..     116     164 .. 0.82
   2 !    9.2   0.0   0.00054       0.7     113     154 ..     182     223 ..     166     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0085
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++vlDv +G+g +a++++d+  +   vv+ D++
       CCE28851.1 126 HRVLDVGTGSGIWAIEFADQFPN-ASVVGTDLS 157
                      589***************99754.567777776 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00054
                      S-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 113 eddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                      + + fD++ + + +  + D +  +keayr   pGG +  le+
       CCE28851.1 182 NANHFDFIHMRYIVGGIQDWTALFKEAYRCCAPGGWVESLEY 223
                      5689**********************************9997 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.6e-05     0.033      43      83 ..     121     161 ..      98     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.6e-05
  Methyltransf_16  43 nelsklsvlELGsGtGlvGlavaellpeakviltDleelle 83 
                      ++ +  +vl++G G+G+  + +a + p+a+v+ tDl+  ++
       CCE28851.1 121 EKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQP 161
                      5667789*****************************98654 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.5e-05     0.045      24      58 ..     123     157 ..     114     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.5e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 ++ +rvL++++G+G  A+ fA ++pn+    +d  
  CCE28851.1 123 DKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 157
                 44569**********************99998876 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.9e-05      0.13       5      33 ..     128     156 ..     124     160 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.9e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28851.1 128 VLDVGTGSGIWAIEFADQFPNASVVGTDL 156
                     89***********************9875 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.14      69     104 ..     120     154 ..      96     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsi 104
                 le +k  rvL+vG+GsG+ +  +a  + +   vv+ 
  CCE28851.1 120 LEKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VVGT 154
                 5667889*************99998876665.6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2742.00
//
Query:       CCE28852.1  [L=382]
Description: uncharacterized protein CPUR_02541 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-20   71.4   0.0      1e-19   71.0   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    2.4e-11   44.2   0.0    7.1e-11   42.7   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    4.1e-09   37.0   0.0    1.4e-08   35.3   0.0    1.9  1  Methyltransf_11  Methyltransferase domain
    7.9e-07   29.7   0.0    6.4e-06   26.8   0.0    2.4  1  Methyltransf_12  Methyltransferase domain
    2.6e-05   24.0   0.0     0.0036   17.1   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
    0.00022   20.8   0.0    0.00045   19.8   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0005   19.6   0.0    0.00087   18.8   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00089   19.4   0.0       0.06   13.5   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
     0.0036   16.7   0.0      0.068   12.5   0.0    2.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0073   16.1   0.0      0.014   15.2   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
     0.0076   16.0   0.0      0.013   15.3   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
      0.045   13.2   0.0       0.11   12.0   0.0    1.6  1  Methyltransf_4   Putative methyltransferase
      0.053   13.3   0.0      0.098   12.4   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.055   12.8   0.0      0.097   12.0   0.0    1.3  1  GidB             rRNA small subunit methyltransferase G
      0.056   12.7   0.0       0.15   11.3   0.0    1.6  2  Methyltransf_2   O-methyltransferase domain
       0.09   12.1   0.0       0.32   10.3   0.0    1.7  2  CMAS             Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   9.1e-23     1e-19      15     127 ..     117     231 ..      96     314 .. 0.79

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 9.1e-23
  Methyltransf_23  15 rllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq....eaaepqgkfdlIvlrevlehvpdppel 101
                      +l+p  +++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + e+++     ++++f  +    e++ ++++fd+I++r+  + + d+++l
       CCE28852.1 117 FLAPLeKDKTHRVLDVGTGSGIWAIEFADQFPnaSVVGTDLSPCQPEWVP-----PNVCFEIDdatlEWTWNANHFDFIHMRYIVGGIGDWTAL 205
                      44443256667*******************8777**************84.....4444422222226666*********************** PP

  Methyltransf_23 102 lrqiatllkpgGylllseplaslked 127
                      ++ ++++++pgG+++  e++++l +d
       CCE28852.1 206 FKEAYRCCAPGGWVESIEYDVELRSD 231
                      ******************99988433 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   6.3e-14   7.1e-11       1      97 []     129     217 ..     129     217 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 6.3e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + e +        +nv f+  da  ++  ++++fD++++++ +  +   d+ +++ke++r++
       CCE28852.1 129 VLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPEWVP-------PNVCFEIDDAtLEWTWNANHFDFIHMRYIVGGIG--DWTALFKEAYRCC 213
                      9******************99**********9988654.......477999999977899***********86666665..9************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28852.1 214 APGG 217
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.2e-11   1.4e-08       1      94 [.     130     219 ..     130     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.2e-11
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+vvg+Dls+ + +++  +       v f   da+ +   + n fD++ ++  +  + d+ +++ke++R++ pg
       CCE28852.1 130 LDVGTGSGIWAIEFADQFpnASVVGTDLSPCQPEWVPPN-------VCFEIDDATlEWTWNANHFDFIHMRYIVGGIGDWTALFKEAYRCCAPG 216
                      8**************9999**************999333.......44444444433589********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28852.1 217 GWV 219
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   5.7e-09   6.4e-06       1      99 []     130     219 ..     130     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 5.7e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + e       +++++ + +++++a         ++fD +++   +  + d+ +++++++++++
       CCE28852.1 130 LDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPEWVPPNVCFEIDDATLEWTWNA---------NHFDFIHMRYIVGGIGDWTALFKEAYRCCA 214
                      8********************************5555555555555555555554.........58**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28852.1 215 PGGWV 219
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.2e-06    0.0036       2      38 ..     124     159 ..     123     161 .. 0.92
   2 ?    4.6   0.0     0.024        27      55     113 ..     168     225 ..     165     257 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.2e-06
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                      dk+ rvlD+G+G+G  ++e+a   +p+a vvG D s+
       CCE28852.1 124 DKTHRVLDVGTGSGIWAIEFA-DQFPNASVVGTDLSP 159
                      78899****************.669*********987 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.024
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      nv Fe+ d++      ++ + fD+i+ + ++  + d  + ++e+ r   pgg + + +++
       CCE28852.1 168 NVCFEIDDATLeWT--WNANHFDFIHMRYIVGGIGDWTALFKEAYRCCAPGGWVESIEYD 225
                      78899999988444..999*******************************9987666665 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     4e-07   0.00045      21      64 ..     115     158 ..     112     161 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4e-07
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k+++++vlD+G+G G+ ++++a++ p+a+v+ +d +
  CCE28852.1 115 QLFLAPLEKDKTHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 158
                 789999********************************999976 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.8e-07   0.00087     160     194 ..     124     159 ..     109     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.8e-07
        PrmA 160 kegeevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++++vlDvGtGSGi ai  a ++  ++vv++D+ +
  CCE28852.1 124 DKTHRVLDVGTGSGIWAIEfADQFPNASVVGTDLSP 159
                 35679*************7477999********987 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   5.3e-05      0.06      20      72 ..     124     178 ..      94     190 .. 0.83
   2 ?    3.6   0.0     0.058        65      29      39 ..     212     222 ..     210     247 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.3e-05
                 -TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCC CS
        FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditd 72 
                 +++++v+D+g + G w+   + ++ + + vv+ Dl p++p    p+v +   d t 
  CCE28852.1 124 DKTHRVLDVGTGSGIWAIEFADQFPN-ASVVGTDLSPCQPEwvpPNVCFEIDDATL 178
                 36799***********9999999875.9**********998888888887777765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.058
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28852.1 212 CCAPGGWVESI 222
                 9******9877 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   6.1e-05     0.068      47     154 ..     125     224 ..     115     230 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.1e-05
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHH CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeay 140
                      + ++vlDv +G+g +a++++d+   +  vv+ D+++   +     +  +   +i+     + e   + + fD++ + + +  + D +  +keay
       CCE28852.1 125 KTHRVLDVGTGSGIWAIEFADQFP-NASVVGTDLSPCQPEW----VPPNVCFEID---DATLEWTWNANHFDFIHMRYIVGGIGDWTALFKEAY 210
                      456899999999999999999985.5679999999865443....3333333443...445677788899************************ PP

                      HHEEEEEEEEEEEE CS
  Ubie_methyltran 141 rvlkpGGrlvvlef 154
                      r   pGG +  +e+
       CCE28852.1 211 RCCAPGGWVESIEY 224
                      *********99996 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.3e-05     0.014      24      58 ..     124     158 ..     116     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.3e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 ++t+rvL++++G+G  A+ fA ++pn+    +d  
  CCE28852.1 124 DKTHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 158
                 56789**********************99988866 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05     0.013      39      89 ..     114     169 ..      99     194 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
  Methyltransf_16  39 e....lganelsklsvlELGsGtGlvGlavaellpeakviltDleell.ellkkni 89 
                      +     + ++ ++ +vl++G G+G+  + +a + p+a+v+ tDl+  + e +  n+
       CCE28852.1 114 DqlflAPLEKDKTHRVLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQpEWVPPNV 169
                      33655566788899******************************985414555555 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.4e-05      0.11       4      33 ..     128     157 ..     125     161 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.4e-05
                     EEEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkknPdknflGiEi 33 
                      vl++G+G+G + ++ A ++P+ +++G ++
      CCE28852.1 128 RVLDVGTGSGIWAIEFADQFPNASVVGTDL 157
                     689***********************9875 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.7e-05     0.098      69     104 ..     121     155 ..     104     160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.7e-05
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsi 104
                 le +k  rvL+vG+GsG+ +  +a  + +   vv+ 
  CCE28852.1 121 LEKDKTHRVLDVGTGSGIWAIEFADQFPNAS-VVGT 155
                 6678999************999998876665.6665 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.7e-05     0.097      16      70 ..      93     147 ..      84     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.7e-05
                 HHHS---S--SHHHHHHHCHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHHHH- CS
        GidB  16 NkkinLtsikepeellerhlldslsvlellkekrdkviDvGsGaGlPGipLaiar 70 
                 N    L s++  + +l+  l d l +++l k+k ++v+DvG+G G+ +i  a  +
  CCE28852.1  93 NDDQQLESMELCHHFLTILLDDQLFLAPLEKDKTHRVLDVGTGSGIWAIEFADQF 147
                 566677777778888888888999999999999989*********9888776555 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.15      17      95 ..      72     158 ..      62     162 .. 0.68
   2 ?   -2.5   0.0       2.3   2.6e+03     147     174 ..     204     231 ..     200     243 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                     HHHHHS--....HHHHHTS..SHHHHHHHHHHHHTTHHHHHHHHHHSS-GG..G-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGis....lfeaikr..deeerakfnkglqessslvakkvleafdle..glkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +++++G++     f+ ++   +++ ++  +++ ++  ++  ++ l    le  + ++++DvG G+G  a + + ++P+ +v+  Dl+
      CCE28852.1  72 YHQIHGRTyhsdKFTTNYFfpNDDQQLESMELCHHFLTILLDDQLFLAPLEkdKTHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 158
                     455555554444555555411333444556666777777777766666554116789***********************9999985 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.3
                     HHHHHHHHH--TT-EEEEEE----TTS- CS
  Methyltransf_2 147 klLkrvkkalpagGkvivveavlgadps 174
                      l k+ ++ + +gG v  +e  ++ + +
      CCE28852.1 204 ALFKEAYRCCAPGGWVESIEYDVELRSD 231
                     68999999******99888876665554 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   1.2e+03     165     192 ..      67      93 ..      27     110 .. 0.66
   2 ?   10.3   0.0   0.00028      0.32      56     101 ..     119     165 ..      90     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
                 EEEEE--HHHHHCTTCCCHHHHHHTSTT CS
        CMAS 165 htitslhkkelaerglklkfidkeiFPg 192
                  ++  +h+ +  + + + kf++++ FP+
  CCE28852.1  67 SSVLEYHQIHGRTYHSD-KFTTNYFFPN 93 
                 44455555555544544.8999999997 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00028
                 TTTT--TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHH CS
        CMAS  56 eklelkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqakla 101
                   le ++ +++Ld+G+G G  +++ ++++ +++vvg  lS  q +++
  CCE28852.1 119 APLEKDKTHRVLDVGTGSGIWAIEFADQFpNASVVGTDLSPCQPEWV 165
                 5566677899******************9789********9887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3010.33
//
Query:       CCE28853.1  [L=330]
Description: uncharacterized protein CPUR_02542 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-20   71.8   0.0    7.9e-20   71.3   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    2.1e-12   47.6   0.0    6.7e-12   46.0   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    9.9e-11   42.2   0.0    4.3e-10   40.1   0.0    2.0  2  Methyltransf_11  Methyltransferase domain
      1e-06   29.4   0.0    8.7e-06   26.4   0.0    2.3  1  Methyltransf_12  Methyltransferase domain
    1.2e-05   25.2   0.0    0.00056   19.7   0.0    2.5  1  Methyltransf_31  Methyltransferase domain
    0.00061   19.3   0.0     0.0011   18.5   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00076   19.6   0.0      0.054   13.6   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
     0.0012   18.2   0.0      0.017   14.4   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0088   15.6   0.0      0.018   14.6   0.0    1.4  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.022   14.5   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
      0.029   14.1   0.0      0.048   13.4   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.065   13.0   0.0       0.12   12.1   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
       0.11   11.7   0.0       0.25   10.6   0.0    1.6  1  CMAS             Mycolic acid cyclopropane synthetase
       0.12   11.7   0.0        0.3   10.3   0.0    1.6  2  Methyltransf_2   O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.0   6.2e-23   7.9e-20      11     126 ..      84     201 ..      72     284 .. 0.78

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 6.2e-23
  Methyltransf_23  11 dklerllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp 99 
                      d  ++l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ + ++ ++d +   +++ ++++fd+I++r+  + ++d++
       CCE28853.1  84 DDQLFLAP-LEKDKihRVLDVGTGSGIWAIEFADQFRnaSVIGTDLSPCQPQWVPpNVSFEIDDAT--LDWTWSENHFDFIHMRYIVGGIQDWT 174
                      55566776.4444446****************9996556*************99666666666655..57778********************* PP

  Methyltransf_23 100 ellrqiatllkpgGylllseplaslke 126
                      +l++ ++++++pgG+++  e++++  +
       CCE28853.1 175 ALFKEAYRCCAPGGWVESIEYDVEFRS 201
                      ********************9988733 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   5.2e-15   6.7e-12       1      97 []     100     188 ..     100     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 5.2e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++ +a+v+g+D+s+ + + +        +nv+f+  da  d+   +++fD++++++ +     +d+ +++ke++r++
       CCE28853.1 100 VLDVGTGSGIWAIEFADQFRNASVIGTDLSPCQPQWVP-------PNVSFEIDDAtLDWTWSENHFDFIHMRYIVGG--IQDWTALFKEAYRCC 184
                      9******************89**********9987653.......5789*****9788*************866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28853.1 185 APGG 188
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       3.5   4.5e+03      52      68 ..      11      28 ..       8      35 .. 0.84
   2 !   40.1   0.0   3.4e-13   4.3e-10       1      94 [.     101     190 ..     101     191 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.5
                     CCCTSS-T.T-EEEEEEE CS
  Methyltransf_11 52 aeklpfed.nsfDlvvss 68
                     ae+lp++d + +D ++s 
       CCE28853.1 11 AEDLPVNDqDEIDSIFSE 28
                     899**9995599999986 PP

  == domain 2  score: 40.1 bits;  conditional E-value: 3.4e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++         +v+f   da+ +    +n fD++ ++  +  ++d+ +++ke++R++ pg
       CCE28853.1 101 LDVGTGSGIWAIEFADQFrnASVIGTDLSPCQPQWVPP-------NVSFEIDDATlDWTWSENHFDFIHMRYIVGGIQDWTALFKEAYRCCAPG 187
                      8**************9999*************988832.......36677777775678*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28853.1 188 GWV 190
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   6.8e-09   8.7e-06       1      99 []     101     190 ..     101     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 6.8e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++++++++g+D+sp +         ++ +  n  +e+++  l+ + ++++fD +++   +  ++d+ +++++++++++
       CCE28853.1 101 LDVGTGSGIWAIEFADQFRNASVIGTDLSPCQP--------QWVP-PNVSFEIDDATLDWTWSENHFDFIHMRYIVGGIQDWTALFKEAYRCCA 185
                      8*******************************9........4443.23334444444444444479**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28853.1 186 PGGWV 190
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.4e-07   0.00056       5     113 ..      98     196 ..      94     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.4e-07
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkileei 97 
                       rvlD+G+G+G  ++e+a++ + +a v+G D s+   +            nv+Fe+ d++      ++++ fD+i+ + ++  + d  + ++e+
       CCE28853.1  98 HRVLDVGTGSGIWAIEFADQ-FRNASVIGTDLSPCQPQWVPP--------NVSFEIDDATLdWT--WSENHFDFIHMRYIVGGIQDWTALFKEA 180
                      68****************65.679********9965444444........9*******999777..999*****************99999999 PP

  Methyltransf_31  98 ervlkpggilliedpr 113
                       r   pgg + + +++
       CCE28853.1 181 YRCCAPGGWVESIEYD 196
                      9999999977666555 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   8.3e-07    0.0011     162     195 ..      97     131 ..      82     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.3e-07
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                  ++vlDvGtGSGi ai  a ++  ++v+++D+ + 
  CCE28853.1  97 IHRVLDVGTGSGIWAIEfADQFRNASVIGTDLSPC 131
                 369*************747799*********9986 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   4.3e-05     0.054      21      71 ..      96     148 ..      62     159 .. 0.84
   2 ?    3.8   0.0     0.044        56      29      39 ..     183     193 ..     180     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.3e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CC CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdit 71 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p+v++   d t
  CCE28853.1  96 KIHRVLDVGTGSGIWAIEFADQFRN-ASVIGTDLSPCQPQwvpPNVSFEIDDAT 148
                 6799***********9999999876.9**********99888899998766665 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.044
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28853.1 183 CCAPGGWVESI 193
                 *******9876 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.3e-05     0.017      49     154 ..      98     195 ..      86     201 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE.--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflq.anaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                      ++vlDv +G+g +a++++d+ ++   v++ D+++   +     +      n+ f     + +   +++ fD++ + + +  + D +  +keayr
       CCE28853.1  98 HRVLDVGTGSGIWAIEFADQFRNA-SVIGTDLSPCQPQW----VPP----NVSFEIdDATLDWTWSENHFDFIHMRYIVGGIQDWTALFKEAYR 182
                      5799***************99875.78999999864333....333....44443304456778899*************************** PP

                      HEEEEEEEEEEEE CS
  Ubie_methyltran 142 vlkpGGrlvvlef 154
                         pGG +  +e+
       CCE28853.1 183 CCAPGGWVESIEY 195
                      ********99996 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.4e-05     0.018      21      64 ..      86     129 ..      83     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++  +a+v  +d +
  CCE28853.1  86 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFRNASVIGTDLS 129
                 689999****9999*******************99999888865 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.7e-05     0.022      31      91 ..      78     142 ..      69     167 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.7e-05
  Methyltransf_16  31 ylekklake...lganelsklsvlELGsGtGlvGlavaellpeakviltDleelle.llkkniel 91 
                      y++  l ++    + ++ +  +vl++G G+G+  + +a +  +a+vi tDl+  ++  +  n+  
       CCE28853.1  78 YFTILLDDQlflAPLEKDKIHRVLDVGTGSGIWAIEFADQFRNASVIGTDLSPCQPqWVPPNVSF 142
                      5555444445555556777889*****************************99664156666665 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.7e-05     0.048      69     105 ..      92     127 ..      67     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.7e-05
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsie 105
                 le +k  rvL+vG+GsG+ +  +a  +++   v++ +
  CCE28853.1  92 LEKDKIHRVLDVGTGSGIWAIEFADQFRNAS-VIGTD 127
                 5667889*****************9999877.77765 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.3e-05      0.12      24      59 ..      95     130 ..      87     138 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G+G  A+ fA ++ n+  + +d  +
  CCE28853.1  95 DKIHRVLDVGTGSGIWAIEFADQFRNASVIGTDLSP 130
                 44569**********************999998765 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0002      0.25      59     105 ..      93     140 ..      61     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
                 T--TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHH CS
        CMAS  59 elkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrv 105
                 e ++ +++Ld+G+G G  +++ ++++ +++v+g  lS  q +++  +v
  CCE28853.1  93 EKDKIHRVLDVGTGSGIWAIEFADQFrNASVIGTDLSPCQPQWVPPNV 140
                 4555679****************999789********99988876555 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00024       0.3       8      95 ..      40     129 ..      34     146 .. 0.77
   2 ?   -2.2   0.0       1.6   2.1e+03     146     171 ..     174     199 ..     158     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00024
                     HHHTS--..HHHHHS--HHHHHTSSHH..HHHHHHHHHHTTHHHHHHHHHHSS-GG..G-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2   8 vregrnqiifkkafGislfeaikrdee..erakfnkglqessslvakkvleafdle..glkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     ++e r   i+ +++    f+ ++  ++   ++  +++ ++  ++  ++ l    le  ++++++DvG G+G  a + + ++ + +vi  Dl+
      CCE28853.1  40 ILEYR--QIYGRTYHSDKFTTNYFFPNddQQLESMELCHHYFTILLDDQLFLAPLEkdKIHRVLDVGTGSGIWAIEFADQFRNASVIGTDLS 129
                     55555..3677777777888777655400555567888888899988887776654228**********************99999999985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
                     HHHHHHHHHH--TT-EEEEEE----T CS
  Methyltransf_2 146 vklLkrvkkalpagGkvivveavlga 171
                     + l k+ ++ + +gG v  +e  ++ 
      CCE28853.1 174 TALFKEAYRCCAPGGWVESIEYDVEF 199
                     56889999999999998777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2627.42
//
Query:       CCE28854.1  [L=143]
Description: uncharacterized protein CPUR_02543 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1053.54
//
Query:       CCE28855.1  [L=360]
Description: uncharacterized protein CPUR_02544 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-19   70.7   0.0    1.9e-19   70.1   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    3.3e-11   43.7   0.0    1.2e-10   42.0   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    1.4e-09   38.5   0.0    7.7e-09   36.1   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
    1.8e-07   31.8   0.0    2.5e-06   28.2   0.0    2.7  2  Methyltransf_12  Methyltransferase domain
     0.0002   21.2   0.0     0.0092   15.8   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
     0.0016   17.9   0.0     0.0029   17.1   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0018   17.9   0.0     0.0036   16.9   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0067   16.5   0.0        0.4   10.8   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
     0.0095   15.3   0.0        1.5    8.1   0.0    2.1  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.016   15.0   0.0      0.029   14.1   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
      0.018   14.8   0.0      0.031   14.0   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
      0.023   14.2   0.0      0.049   13.1   0.0    1.5  1  Methyltransf_4   Putative methyltransferase
       0.03   13.6   0.0      0.076   12.3   0.0    1.6  2  Methyltransf_2   O-methyltransferase domain
       0.18   11.5   0.0       0.31   10.8   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   1.5e-22   1.9e-19      15     125 ..     118     230 ..     105     283 .. 0.81

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 1.5e-22
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   s++g Dlsp + ++++ +  + ++d +   e++ ++++fd+I++r+  + ++d+++l++
       CCE28855.1 118 FLAP-LEKNKihRVLDVGTGSGIWAIEFADQFPnaSIIGTDLSPCQPQWVPpNLCFEIDDAT--LEWTWDANHFDFIHMRYIVGGIEDWTALFK 208
                      4554.4444445*******************87779************98542222222222..36667999********************** PP

  Methyltransf_23 104 qiatllkpgGylllseplaslk 125
                       ++++++pgG+++  e++++  
       CCE28855.1 209 EAYRCCAPGGWVESVEYDVEFR 230
                      ****************998763 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0     9e-14   1.2e-10       1      97 []     130     218 ..     130     218 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 9e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+++g+D+s+ + + +         n+ f+  da  ++  ++++fD++++++ +  +  ed+ +++ke++r++
       CCE28855.1 130 VLDVGTGSGIWAIEFADQFPNASIIGTDLSPCQPQWVPP-------NLCFEIDDAtLEWTWDANHFDFIHMRYIVGGI--EDWTALFKEAYRCC 214
                      9******************99**********99887655.......558999999778999**********8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28855.1 215 APGG 218
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.3   2.9e+03      51      72 ..      20      42 ..       3      70 .. 0.75
   2 !   36.1   0.0     6e-12   7.7e-09       1      94 [.     131     220 ..     131     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.3
                     ECCCTSS-T.T-EEEEEEES-CC CS
  Methyltransf_11 51 daeklpfed.nsfDlvvssevlh 72
                      ae++ + d + +D v+s e+++
       CCE28855.1 20 AAEDVSIDDqDEIDSVFSEEFVN 42
                     46666777745899999998664 PP

  == domain 2  score: 36.1 bits;  conditional E-value: 6e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+++g+Dls+ + +++  +         f   da+ +     n fD++ ++  +  +ed+ +++ke++R++ pg
       CCE28855.1 131 LDVGTGSGIWAIEFADQFpnASIIGTDLSPCQPQWVPPNL-------CFEIDDATlEWTWDANHFDFIHMRYIVGGIEDWTALFKEAYRCCAPG 217
                      8**************9999**************9983333.......333344442358999******************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28855.1 218 GWV 220
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.7   2.1e+03      64      78 ..      48      71 ..       5     102 .. 0.67
   2 !   28.2   0.0   1.9e-09   2.5e-06       1      99 []     131     220 ..     131     220 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.7
  Methyltransf_12 64 g.........ssfDlvvasnvlhh 78
                               +sf + +as+vl++
       CCE28855.1 48 LfqlpnvrrsKSFTTSIASSVLEY 71
                     033344555567777777777776 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 1.9e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     l +++++ + +++++a+         +fD +++   +  ++d+ +++++++++++
       CCE28855.1 131 LDVGTGSGIWAIEFADQFPNASIIGTDLSPCQPQWVPPNLCFEIDDATLEWTWDAN---------HFDFIHMRYIVGGIEDWTALFKEAYRCCA 215
                      8********************************66777777777766666666655.........7**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28855.1 216 PGGWV 220
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.2e-06    0.0092       5      38 ..     128     160 ..     124     162 .. 0.90
   2 ?    3.1   0.0      0.06        76      55     113 ..     169     226 ..     166     269 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.2e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a ++G D s+
       CCE28855.1 128 HRVLDVGTGSGIWAIEFA-DQFPNASIIGTDLSP 160
                      58****************.669*********987 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.06
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      n+ Fe+ d++      +  + fD+i+ + ++  + d  + ++e+ r   pgg + + +++
       CCE28855.1 169 NLCFEIDDATLeWT--WDANHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGGWVESVEYD 226
                      55677777777333..8889*****************************99977665555 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.2e-06    0.0029     161     194 ..     126     160 ..     113     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.2e-06
        PrmA 161 egeevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                 + ++vlDvGtGSGi ai  a ++  ++++++D+ +
  CCE28855.1 126 KIHRVLDVGTGSGIWAIEfADQFPNASIIGTDLSP 160
                 4479*************74779999*******987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.8e-06    0.0036      21      63 ..     116     158 ..     113     161 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.8e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a++  +d 
  CCE28855.1 116 QLFLAPLEKNKIHRVLDVGTGSGIWAIEFADQFPNASIIGTDL 158
                 689999****9999**********************9998886 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00031       0.4      21      70 ..     126     177 ..     107     190 .. 0.79
   2 ?    3.4   0.0     0.056        71      29      39 ..     213     223 ..     210     252 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00031
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 + ++v+D+g + G w+   + ++ + + +++ Dl p++p    p++ +   d 
  CCE28855.1 126 KIHRVLDVGTGSGIWAIEFADQFPN-ASIIGTDLSPCQPQwvpPNLCFEIDDA 177
                 6789***********9999999875.9**********9877766666655555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.056
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28855.1 213 CCAPGGWVESV 223
                 *******9876 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.011        14      49      80 ..     128     158 ..     116     163 .. 0.78
   2 !    8.1   0.0    0.0012       1.5     112     154 ..     183     225 ..     171     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDi 80 
                      ++vlDv +G+g +a++++d+  +   +++ D+
       CCE28855.1 128 HRVLDVGTGSGIWAIEFADQFPN-ASIIGTDL 158
                      589***************98754.45566665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0012
                      TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 112 feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       + + fD++ + + +  + D +  +keayr   pGG +  +e+
       CCE28855.1 183 WDANHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGGWVESVEY 225
                      56689********************************999886 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.3e-05     0.029      24      59 ..     125     160 ..     117     166 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.3e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE28855.1 125 NKIHRVLDVGTGSGIWAIEFADQFPNASIIGTDLSP 160
                 45569**********************999999765 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.4e-05     0.031      40      82 ..     120     162 ..      89     187 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-05
  Methyltransf_16  40 lganelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                       + ++ +  +vl++G G+G+  + +a + p+a++i tDl+  +
       CCE28855.1 120 APLEKNKIHRVLDVGTGSGIWAIEFADQFPNASIIGTDLSPCQ 162
                      4567778899****************************98765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.8e-05     0.049       5      33 ..     130     158 ..     126     162 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.8e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28855.1 130 VLDVGTGSGIWAIEFADQFPNASIIGTDL 158
                     89************************876 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     6e-05     0.076      57      95 ..     121     159 ..      62     165 .. 0.70
   2 ?   -2.8   0.0       2.4   3.1e+03     146     169 ..     204     227 ..     200     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6e-05
                     SS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  57 afdleglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                       + +++++++DvG G+G  a + + ++P+ ++i  Dl+
      CCE28855.1 121 PLEKNKIHRVLDVGTGSGIWAIEFADQFPNASIIGTDLS 159
                     33456899*************************999985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.4
                     HHHHHHHHHH--TT-EEEEEE--- CS
  Methyltransf_2 146 vklLkrvkkalpagGkvivveavl 169
                     + l k+ ++ + +gG v  ve  +
      CCE28855.1 204 TALFKEAYRCCAPGGWVESVEYDV 227
                     568999999999999987777655 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00024      0.31      69      97 ..     122     150 ..     114     160 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00024
                 TT--TT-EEEEES-TTSHHHHHHHHHHCT CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvge 97 
                 le +k  rvL+vG+GsG+ +  +a  + +
  CCE28855.1 122 LEKNKIHRVLDVGTGSGIWAIEFADQFPN 150
                 5567889***********99988877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2761.32
//
Query:       CCE28856.1  [L=361]
Description: uncharacterized protein CPUR_02545 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-19   69.1   0.0    6.3e-19   68.4   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    8.7e-11   42.4   0.0    2.2e-10   41.1   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    1.4e-08   35.3   0.0    3.4e-08   34.0   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    5.5e-07   30.3   0.0      5e-06   27.2   0.0    2.5  2  Methyltransf_12  Methyltransferase domain
    0.00025   20.9   0.0      0.015   15.1   0.0    2.2  2  Methyltransf_31  Methyltransferase domain
    0.00028   20.5   0.0    0.00056   19.5   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0011   18.7   0.0     0.0021   17.8   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
     0.0018   17.6   0.0     0.0051   16.1   0.0    1.6  2  Methyltransf_2   O-methyltransferase domain
     0.0049   16.3   0.0     0.0081   15.6   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
  ------ inclusion threshold ------
      0.014   15.5   0.0       0.77    9.8   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
      0.033   13.5   0.0        1.5    8.1   0.0    2.1  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
       0.18   11.1   0.0       0.29   10.4   0.0    1.2  1  GidB             rRNA small subunit methyltransferase G
       0.18   11.2   0.3       0.43   10.0   0.0    1.7  2  Methyltransf_4   Putative methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   4.5e-22   6.3e-19      15     127 ..     119     233 ..     105     279 .. 0.77

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 4.5e-22
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p l++++  rvLd+G+G+Gi+  ++++++   sv+g Dlsp + ++++ +  + ++d +   e++ ++++fd+I++r+  + ++d+++l++
       CCE28856.1 119 FLAP-LEKDKirRVLDVGTGSGIWGIEFADQFPnaSVVGTDLSPCQPQWVPpNLCFEIDDAT--LEWTWNANHFDFIHMRYIVGGIQDWTALFK 209
                      4555.3333344*******************8777*************98542222223322..46667************************* PP

  Methyltransf_23 104 qiatllkpgGylllseplaslked 127
                       ++++++pgG+++  e++++  +d
       CCE28856.1 210 EAYRCCAPGGWVESVEYDVEFRSD 233
                      ****************99887433 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.6e-13   2.2e-10       1      97 []     131     219 ..     131     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.6e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G + +++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  ++++fD++++++ +     +d+ +++ke++r++
       CCE28856.1 131 VLDVGTGSGIWGIEFADQFPNASVVGTDLSPCQPQWVPP-------NLCFEIDDAtLEWTWNANHFDFIHMRYIVGG--IQDWTALFKEAYRCC 215
                      9******************99**********99887655.......558999999778999**********866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28856.1 216 APGG 219
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   2.4e-11   3.4e-08       1      94 [.     132     221 ..     132     222 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 2.4e-11
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+   ++a+++  a+vvg+Dls+ + +++  +         f   da+ +   + n fD++ ++  +  ++d+ +++ke++R++ pg
       CCE28856.1 132 LDVGTGSGIWGIEFADQFpnASVVGTDLSPCQPQWVPPNL-------CFEIDDATlEWTWNANHFDFIHMRYIVGGIQDWTALFKEAYRCCAPG 218
                      8**************9999**************9983333.......3333444423589********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28856.1 219 GWV 221
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.7   5.1e+03      21      60 ..      60      99 ..      39     111 .. 0.56
   2 !   27.2   0.0   3.6e-09     5e-06       1      99 []     132     221 ..     132     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.7
  Methyltransf_12 21 ieytgvDispsaiedakeklakrennnnnnvelealdlld 60
                     ++  ++ i +s++e ++   + ++ ++++ + ++ +d+ +
       CCE28856.1 60 SKSFATSIASSVLEYRQIYGRTYHSDKFTANYFFPNDDQQ 99
                     4444444444444444444444555555555555555555 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 3.6e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G    ++++++p+++++g+D+sp + +     l +++++ + +++++a+         +fD +++   +  ++d+ +++++++++++
       CCE28856.1 132 LDVGTGSGIWGIEFADQFPNASVVGTDLSPCQPQWVPPNLCFEIDDATLEWTWNAN---------HFDFIHMRYIVGGIQDWTALFKEAYRCCA 216
                      8********************************66666666666666666666554.........7**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28856.1 217 PGGWV 221
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-05     0.015       5      38 ..     129     161 ..     125     163 .. 0.90
   2 ?    3.5   0.0     0.039        54      55     112 ..     170     226 ..     167     259 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a vvG D s+
       CCE28856.1 129 RRVLDVGTGSGIWGIEFA-DQFPNASVVGTDLSP 161
                      58****************.669*********987 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.039
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilliedp 112
                      n+ Fe+ d++      ++ + fD+i+ + ++  + d  + ++e+ r   pgg + + ++
       CCE28856.1 170 NLCFEIDDATLeWT--WNANHFDFIHMRYIVGGIQDWTALFKEAYRCCAPGGWVESVEY 226
                      56678888877333..899*****************************99997765555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     4e-07   0.00056      21      64 ..     117     160 ..     100     163 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4e-07
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G G+ g+++a++ p+a+v+ +d +
  CCE28856.1 117 QLFLAPLEKDKIRRVLDVGTGSGIWGIEFADQFPNASVVGTDLS 160
                 799999****9999************************999976 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.5e-06    0.0021      43      82 ..     124     163 ..      97     188 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.5e-06
  Methyltransf_16  43 nelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      ++ + ++vl++G G+G+ G+ +a + p+a+v+ tDl+  +
       CCE28856.1 124 EKDKIRRVLDVGTGSGIWGIEFADQFPNASVVGTDLSPCQ 163
                      5567789****************************98765 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.7e-06    0.0051       5      95 ..      68     160 ..      64     166 .. 0.79
   2 ?   -2.0   0.0       1.3   1.8e+03     147     174 ..     206     233 ..     193     254 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.7e-06
                     HHHHHHTS--..HHHHHS--HHHHHTSSHH..HHHHHHHHHHTTHHHHHHHHHHSS-GG..G-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2   5 adavregrnqiifkkafGislfeaikrdee..erakfnkglqessslvakkvleafdle..glkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     a  v+e r   i+ +++    f+a++  ++   ++k  + +++ss++  ++ l    le  ++++++DvG G+G    + + ++P+ +v+  Dl+
      CCE28856.1  68 ASSVLEYR--QIYGRTYHSDKFTANYFFPNddQQLKSEEIFHHSSTILLDDQLFLAPLEkdKIRRVLDVGTGSGIWGIEFADQFPNASVVGTDLS 160
                     56677777..4788888888999998765500555667788999999999987777654228**************************9999985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
                     HHHHHHHHH--TT-EEEEEE----TTS- CS
  Methyltransf_2 147 klLkrvkkalpagGkvivveavlgadps 174
                      l k+ ++ + +gG v  ve  ++ + +
      CCE28856.1 206 ALFKEAYRCCAPGGWVESVEYDVEFRSD 233
                     6889999999999999888876665544 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.9e-06    0.0081     162     194 ..     128     161 ..     112     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.9e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi  i  a ++  ++vv++D+ +
  CCE28856.1 128 IRRVLDVGTGSGIWGIEfADQFPNASVVGTDLSP 161
                 369*************7477999********987 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00056      0.77      21      70 ..     127     178 ..      97     192 .. 0.77
   2 ?    3.4   0.0     0.054        74      29      39 ..     214     224 ..     211     247 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00056
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 + ++v+D+g + G w    + ++ + + vv+ Dl p++p    p++ +   d 
  CCE28856.1 127 KIRRVLDVGTGSGIWGIEFADQFPN-ASVVGTDLSPCQPQwvpPNLCFEIDDA 178
                 5688***********8777777765.9**********9877766666655555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.054
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28856.1 214 CCAPGGWVESV 224
                 *******9876 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.037        51      49      81 ..     129     160 ..     118     165 .. 0.81
   2 ?    8.1   0.0    0.0011       1.5     112     154 ..     184     226 ..     172     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.037
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++vlDv +G+g + ++++d+  +   vv+ D++
       CCE28856.1 129 RRVLDVGTGSGIWGIEFADQFPN-ASVVGTDLS 160
                      579***************99754.467777766 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0011
                      TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 112 feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       + + fD++ + + +  + D +  +keayr   pGG +  +e+
       CCE28856.1 184 WNANHFDFIHMRYIVGGIQDWTALFKEAYRCCAPGGWVESVEY 226
                      56689********************************999986 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00021      0.29      37      73 ..     116     152 ..      95     156 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00021
                 HHHHHGGCS-CCC-.EEEETSTTTTTHHHHHHH-TTS CS
        GidB  37 dslsvlellkekrdkviDvGsGaGlPGipLaiarpel 73 
                 d l +++l k+k  +v+DvG+G G+ Gi  a  +p+ 
  CCE28856.1 116 DQLFLAPLEKDKIRRVLDVGTGSGIWGIEFADQFPNA 152
                 555555655555547************9887666655 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00031      0.43       5      33 ..     131     159 ..     128     163 .. 0.92
   2 ?   -3.8   0.2       5.5   7.5e+03      79      89 ..     285     296 ..     281     296 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00031
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28856.1 131 VLDVGTGSGIWGIEFADQFPNASVVGTDL 159
                     79***********************9875 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.5
                     ES-.----SGGG CS
  Methyltransf_4  79 lFP.DPwfKkrh 89 
                      FP  Pw K r+
      CCE28856.1 285 KFPiGPWAKDRK 296
                     57745****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2613.26
//
Query:       CCE28857.1  [L=357]
Description: uncharacterized protein CPUR_02546 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-20   71.8   0.0    8.8e-20   71.2   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    2.4e-11   44.2   0.0    6.8e-11   42.7   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    1.1e-09   38.8   0.0    5.7e-09   36.5   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
    4.3e-07   30.6   0.0    2.3e-06   28.3   0.0    2.1  1  Methyltransf_12  Methyltransferase domain
    0.00014   21.7   0.0       0.01   15.6   0.0    2.5  2  Methyltransf_31  Methyltransferase domain
     0.0007   19.2   0.0     0.0014   18.2   0.0    1.5  1  MTS              Methyltransferase small domain
    0.00093   18.7   0.0     0.0014   18.1   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0038   17.4   0.0       0.19   11.9   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.018   14.4   0.0        3.5    6.9   0.0    2.1  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.022   14.1   0.0      0.043   13.1   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain
      0.028   14.2   0.0      0.044   13.5   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.029   14.1   0.0      0.051   13.3   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
      0.067   12.6   0.0       0.13   11.7   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.091   12.5   0.0       0.17   11.7   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.15   11.4   0.0       0.25   10.6   0.0    1.3  1  GidB             rRNA small subunit methyltransferase G


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   7.4e-23   8.8e-20      11     159 ..     111     271 ..      93     273 .. 0.70

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 7.4e-23
  Methyltransf_23  11 dklerllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp 99 
                      d +++l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   e++ ++++fd+I++r+  + ++d++
       CCE28857.1 111 DDRLFLAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSVVGTDLSPCQPQWVPpNLCFEIDDAT--LEWTWNANHFDFIHMRYIVGGIQDWT 201
                      55666666.4444457*******************8777*************98542222223322..46667********************* PP

  Methyltransf_23 100 ellrqiatllkpgGylllseplasl........kedrllldwlylvpag..rhi.sffsarslkelleeaG 159
                      +l+  ++++++pgG+++  e+  +          e  l+ + ++ ++ag       +f  + l ++l eaG
       CCE28857.1 202 ALFEEAYRCCAPGGWVESVEYEPEIcsddgstdLEPVLASYGELFREAGntM-NrPLFVKEILPRALDEAG 271
                      ******************9976554444555433444444444555554322.235555555555555555 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   5.7e-14   6.8e-11       1      97 []     127     215 ..     127     215 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 5.7e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  ++++fD++++++ +     +d+ ++++e++r++
       CCE28857.1 127 VLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPQWVPP-------NLCFEIDDAtLEWTWNANHFDFIHMRYIVGG--IQDWTALFEEAYRCC 211
                      9******************99**********99887655.......558999999778999**********866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28857.1 212 APGG 215
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       2.8   3.3e+03      52      71 ..      20      40 ..       5      42 .. 0.83
   2 !   36.5   0.0   4.7e-12   5.7e-09       1      94 [.     128     217 ..     128     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.8
                     CCCTSS-T.T-EEEEEEES-C CS
  Methyltransf_11 52 aeklpfed.nsfDlvvssevl 71
                     ae++p +d + +D v+s e++
       CCE28857.1 20 AEDIPANDqDEIDSVFSDEFV 40
                     789999995699999998876 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 4.7e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+vvg+Dls+ + +++  +         f   da+ +   + n fD++ ++  +  ++d+ ++++e++R++ pg
       CCE28857.1 128 LDVGTGSGIWAIEFADQFpnASVVGTDLSPCQPQWVPPNL-------CFEIDDATlEWTWNANHFDFIHMRYIVGGIQDWTALFEEAYRCCAPG 214
                      8**************9999**************9983333.......3333444423589********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28857.1 215 GWV 217
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.9e-09   2.3e-06       1      99 []     128     217 ..     128     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.9e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     l +++++ + +++++a+         +fD +++   +  ++d+ +++++++++++
       CCE28857.1 128 LDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPQWVPPNLCFEIDDATLEWTWNAN---------HFDFIHMRYIVGGIQDWTALFEEAYRCCA 212
                      8********************************66666666666666666666554.........7**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28857.1 213 PGGWV 217
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   8.5e-06      0.01       5      38 ..     125     157 ..     121     159 .. 0.90
   2 ?    3.4   0.0      0.05        60      55     107 ..     166     217 ..     163     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.5e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a vvG D s+
       CCE28857.1 125 HRVLDVGTGSGIWAIEFA-DQFPNASVVGTDLSP 157
                      68****************.669*********987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.05
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      n+ Fe+ d++      ++ + fD+i+ + ++  + d  + +ee+ r   pgg +
       CCE28857.1 166 NLCFEIDDATLeWT--WNANHFDFIHMRYIVGGIQDWTALFEEAYRCCAPGGWV 217
                      56678888877333..899***************************99999965 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.2e-06    0.0014      21      64 ..     113     156 ..     110     159 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v+ +d +
  CCE28857.1 113 RLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 156
                 689999****9999************************999976 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-06    0.0014     162     195 ..     124     158 ..     109     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                  ++vlDvGtGSGi ai  a ++  ++vv++D+ + 
  CCE28857.1 124 IHRVLDVGTGSGIWAIEfADQFPNASVVGTDLSPC 158
                 369*************747799*********9875 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00016      0.19      21      70 ..     123     174 ..      99     188 .. 0.80
   2 ?    3.2   0.0     0.071        85      29      39 ..     210     220 ..     208     241 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 + ++v+D+g + G w+   + ++ + + vv+ Dl p++p    p++ +   d 
  CCE28857.1 123 KIHRVLDVGTGSGIWAIEFADQFPN-ASVVGTDLSPCQPQwvpPNLCFEIDDA 174
                 6799***********9999999875.9**********9877766666655555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.071
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28857.1 210 CCAPGGWVESV 220
                 9******9865 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0094        11      49      81 ..     125     156 ..     114     161 .. 0.81
   2 ?    6.9   0.0     0.003       3.5     112     154 ..     180     222 ..     168     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0094
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++vlDv +G+g +a++++d+  +   vv+ D++
       CCE28857.1 125 HRVLDVGTGSGIWAIEFADQFPN-ASVVGTDLS 156
                      589***************99754.467777776 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.003
                      TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 112 feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       + + fD++ + + +  + D +  ++eayr   pGG +  +e+
       CCE28857.1 180 WNANHFDFIHMRYIVGGIQDWTALFEEAYRCCAPGGWVESVEY 222
                      56689*********************************99997 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.6e-05     0.043      16      95 ..      73     156 ..      61     161 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
                     .HHHHHS--HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  16 ifkkafGislfeaikrdeeerakf..nkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     i+ +++    f+ ++  ++ +++    ++ ++  ++  ++ l        ++++++DvG G+G  a + + ++P+ +v+  Dl+
      CCE28857.1  73 IYGRTYHSDKFTTNYFFPNDDRQLesEELCHHLLTILLDDRLFLAPleKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 156
                     5666666667777766555554441134455556666666555554115689*************************9999985 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.7e-05     0.044      39      82 ..     112     159 ..      97     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.7e-05
  Methyltransf_16  39 e....lganelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      +     + ++ +  +vl++G G+G+  + +a + p+a+v+ tDl+  +
       CCE28857.1 112 DrlflAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQ 159
                      455554556777889****************************98765 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.3e-05     0.051      24      58 ..     122     156 ..     115     163 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.3e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 ++ +rvL++++G+G  A+ fA ++pn+    +d  
  CCE28857.1 122 DKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 156
                 44569**********************99988865 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.13       5      33 ..     127     155 ..     123     159 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28857.1 127 VLDVGTGSGIWAIEFADQFPNASVVGTDL 155
                     89***********************9875 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.17      69     104 ..     119     153 ..     107     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsi 104
                 le +k  rvL+vG+GsG+ +  +a  + +   vv+ 
  CCE28857.1 119 LEKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VVGT 153
                 5667889*************99998876665.6665 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00021      0.25      16      70 ..      91     145 ..      82     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
                 HHHS---S--SHHHHHHHCHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHHHH- CS
        GidB  16 NkkinLtsikepeellerhlldslsvlellkekrdkviDvGsGaGlPGipLaiar 70 
                 N  + L s +  + ll+  l d l +++l k+k ++v+DvG+G G+ +i  a  +
  CCE28857.1  91 NDDRQLESEELCHHLLTILLDDRLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQF 145
                 666677777777788887888889999988888878*********9888776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2564.04
//
Query:       CCE28858.1  [L=340]
Description: uncharacterized protein CPUR_02547 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-18   67.6   0.0    1.7e-18   67.0   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    4.1e-10   40.2   0.0    1.2e-09   38.7   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    8.8e-08   32.7   0.0    4.1e-07   30.6   0.0    2.0  2  Methyltransf_11  Methyltransferase domain
     0.0001   23.0   0.0    0.00083   20.1   0.0    2.3  1  Methyltransf_12  Methyltransferase domain
    0.00051   19.5   0.0      0.001   18.6   0.0    1.5  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00076   19.1   0.0     0.0015   18.1   0.0    1.4  1  MTS              Methyltransferase small domain
    0.00078   19.6   0.0      0.063   13.4   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
     0.0011   18.8   0.0      0.011   15.6   0.0    2.1  2  Methyltransf_31  Methyltransferase domain
     0.0092   15.3   0.0       0.17   11.2   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.022   14.5   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.021   14.1   0.0      0.034   13.4   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
      0.025   14.3   0.0      0.045   13.5   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
      0.069   12.6   0.0       0.12   11.8   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
       0.12   12.1   0.0       0.18   11.5   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   1.4e-21   1.7e-18      15     160 ..      98     255 ..      77     257 .. 0.73

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 1.4e-21
  Methyltransf_23  15 rllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.....eaaepqgkfdlIvlrevlehvpdppe 100
                      +l+p  +++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++     ++++f e+     e++ + ++f++I++r+  + ++d++ 
       CCE28858.1  98 FLAPLeKEKIHRVLDVGTGSGIWAIEFADQFPnaSVVGTDLSPCQPQWVP-----PNVCF-EIddatlEWTWNPDHFEFIHMRYIVGGIQDWAT 185
                      44443134444*******************8777*************984.....44444.22122225556999******************* PP

  Methyltransf_23 101 llrqiatllkpgGylllseplasl........kedrllldwlylvpagrhi..sffsarslkelleeaGl 160
                      l++ ++++++pgG+++ +e+  +          e  l+l+  + ++a++ +   +f  + l ++l eaG+
       CCE28858.1 186 LFKEAFRCCAPGGWVESLEYEPEFrsddgstdLEPVLALYGDLFRKASKILnrPLFVKDILPRALDEAGF 255
                      *******************876665555555445555555555566654445566666666666666666 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   9.8e-13   1.2e-09       1      97 []     110     198 ..     110     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 9.8e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +        +nv f+  da  ++  + ++f ++++++ +     +d+++++ke++r++
       CCE28858.1 110 VLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPQWVP-------PNVCFEIDDAtLEWTWNPDHFEFIHMRYIVGG--IQDWATLFKEAFRCC 194
                      9******************99**********9987654.......4779999999777999999*******866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28858.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         3   3.8e+03      50      68 ..      19      38 ..       2      46 .. 0.73
   2 !   30.6   0.0   3.2e-10   4.1e-07       1      94 [.     111     200 ..     111     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3
                     EECCCTSS-T.T-EEEEEEE CS
  Methyltransf_11 50 adaeklpfed.nsfDlvvss 68
                       ae++p++d + +D ++s 
       CCE28858.1 19 IAAEDIPVNDqDEIDSIFSE 38
                     56899999995599999986 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 3.2e-10
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+vvg+Dls+ + +++  +       v f   da+ +   + + f ++ ++  +  ++d++ ++ke+ R++ pg
       CCE28858.1 111 LDVGTGSGIWAIEFADQFpnASVVGTDLSPCQPQWVPPN-------VCFEIDDATlEWTWNPDHFEFIHMRYIVGGIQDWATLFKEAFRCCAPG 197
                      8**************9999**************998333.......33334444423467888******************************* PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28858.1 198 GWV 200
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.5e-07   0.00083       1      99 []     111     200 ..     111     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.5e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp +         ++ +  n ++e+++  l+ +  +++f  +++   +  ++d++ +++++ ++++
       CCE28858.1 111 LDVGTGSGIWAIEFADQFPNASVVGTDLSPCQP--------QWVP-PNVCFEIDDATLEWTWNPDHFEFIHMRYIVGGIQDWATLFKEAFRCCA 195
                      8*****************************999........5554.55666666666666666689**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28858.1 196 PGGWV 200
                      ***85 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.5   5.7e+03      53      73 ..      27      47 ..      17      68 .. 0.57
   2 !   18.6   0.0   7.8e-07     0.001     160     194 ..     105     140 ..      80     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.5
        PrmA 53 keevkvkalfkeeteakelia 73
                +++ +++++f+e+++ +  ia
  CCE28858.1 27 NDQDEIDSIFSEDQSSTTSIA 47
                455555666655554443332 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 7.8e-07
        PrmA 160 kegeevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                 ++ ++vlDvGtGSGi ai  a ++  ++vv++D+ +
  CCE28858.1 105 EKIHRVLDVGTGSGIWAIEfADQFPNASVVGTDLSP 140
                 34479*************747799*********987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.2e-06    0.0015      21      64 ..      96     139 ..      93     141 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.2e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+ke+ ++vlD+G+G G+ ++++a++ p+a+v+ +d +
  CCE28858.1  96 QLFLAPLEKEKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 139
                 689999****9999************************999975 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.9e-05     0.063      21      71 ..     106     158 ..      79     168 .. 0.83
   2 ?    3.9   0.0      0.04        51      29      39 ..     193     203 ..     192     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CC CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdit 71 
                 + ++v+D+g + G w+   + ++ + + vv+ Dl p++p    p+v +   d t
  CCE28858.1 106 KIHRVLDVGTGSGIWAIEFADQFPN-ASVVGTDLSPCQPQwvpPNVCFEIDDAT 158
                 6799***********9999999875.9**********99888888887766666 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.04
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + l
  CCE28858.1 193 CCAPGGWVESL 203
                 9******9987 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   8.5e-06     0.011       5      38 ..     108     140 ..     104     142 .. 0.90
   2 ?    0.6   0.0      0.33   4.3e+02      55     106 ..     149     199 ..     146     219 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.5e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a vvG D s+
       CCE28858.1 108 HRVLDVGTGSGIWAIEFA-DQFPNASVVGTDLSP 140
                      58****************.669*********987 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.33
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggi 106
                      nv Fe+ d++      ++++ f +i+ + ++  + d +  ++e++r   pgg 
       CCE28858.1 149 NVCFEIDDATLeWT--WNPDHFEFIHMRYIVGGIQDWATLFKEAFRCCAPGGW 199
                      78899999988444..999************9999999999999999999985 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00013      0.17      49     154 ..     108     205 ..      98     211 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrv 142
                      ++vlDv +G+g +a++++d+   +  vv+ D+++       + +  +   +i+     + e   + d f+++ + + +  + D  + +kea+r 
       CCE28858.1 108 HRVLDVGTGSGIWAIEFADQFP-NASVVGTDLSPCQP----QWVPPNVCFEID---DATLEWTWNPDHFEFIHMRYIVGGIQDWATLFKEAFRC 193
                      5789999999999999999875.56788999887543....334444444443...4456777888999************************* PP

                      EEEEEEEEEEEE CS
  Ubie_methyltran 143 lkpGGrlvvlef 154
                        pGG +  le+
       CCE28858.1 194 CAPGGWVESLEY 205
                      *******99996 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.7e-05     0.022      39      83 ..      96     143 ..      80     177 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.7e-05
  Methyltransf_16  39 e...lganelsklsvlELGsGtGlvGlavaellpeakviltDleelle 83 
                      +    + ++ +  +vl++G G+G+  + +a + p+a+v+ tDl+  ++
       CCE28858.1  96 QlflAPLEKEKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQP 143
                      25544556778889*****************************98654 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.7e-05     0.034      17      95 ..      53     139 ..      40     143 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.7e-05
                     HHHHHS--....HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGis....lfeaikrdeeerakf..nkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +++++G++     f+ ++  ++ +++    +  ++  ++  ++ l       e++++++DvG G+G  a + + ++P+ +v+  Dl+
      CCE28858.1  53 YRQIHGRTyhsdKFTTNYFIPNDDKQLetEEICHHFLTILLDDQLFLAPleKEKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 139
                     4555555444445655555444444431034444555566665554444116789*************************9999985 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.5e-05     0.045      25      58 ..     106     139 ..      96     147 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.5e-05
      DUF938  25 ttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 + +rvL++++G+G  A+ fA ++pn+    +d  
  CCE28858.1 106 KIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 139
                 4469**********************99988876 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.5e-05      0.12       5      33 ..     110     138 ..     106     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28858.1 110 VLDVGTGSGIWAIEFADQFPNASVVGTDL 138
                     89***********************9875 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.18      69     104 ..     102     136 ..      89     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsi 104
                 le +k  rvL+vG+GsG+ +  +a  + +   vv+ 
  CCE28858.1 102 LEKEKIHRVLDVGTGSGIWAIEFADQFPNAS-VVGT 136
                 5556789*************99998876665.6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2341.78
//
Query:       CCE28859.1  [L=358]
Description: uncharacterized protein CPUR_02548 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-19   68.7   0.0    8.3e-19   68.0   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.5e-10   41.6   0.0    4.8e-10   40.0   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
      4e-08   33.8   0.0    2.6e-07   31.2   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
    2.9e-05   24.7   0.0    0.00042   21.0   0.0    2.7  3  Methyltransf_12  Methyltransferase domain
    0.00077   19.6   0.0       0.07   13.2   0.0    2.4  2  FtsJ             FtsJ-like methyltransferase
     0.0011   18.5   0.0     0.0023   17.5   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0016   18.3   0.0     0.0091   15.8   0.0    2.2  3  Methyltransf_31  Methyltransferase domain
     0.0016   17.9   0.0     0.0028   17.1   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0017   17.7   0.0     0.0029   16.9   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.017   14.8   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.018   14.8   0.0      0.033   14.0   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
      0.025   14.1   0.0      0.049   13.1   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.081   12.2   0.0        1.5    8.1   0.0    2.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
       0.11   11.8   0.0       0.55    9.5   0.0    2.1  1  CMAS             Mycolic acid cyclopropane synthetase
       0.12   12.2   0.0       0.19   11.5   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0     7e-22   8.3e-19      15     160 ..     116     273 ..      94     275 .. 0.78

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 7e-22
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.....eaaepqgkfdlIvlrevlehvpdpp 99 
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++     ++++f e+     e++ ++++f +I++r+  + ++d++
       CCE28859.1 116 FLAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWVP-----PNVCF-EIddatlEWTWDANHFAFIHMRYIVGGIQDWT 202
                      4555.4444456*******************87779************984.....44444.22122225666999****************** PP

  Methyltransf_23 100 ellrqiatllkpgGylllseplasl........kedrllldwlylvpagrhi..sffsarslkelleeaGl 160
                      + ++ ++++++pgG+++ +e+ ++          e  l+ + ++ ++ag+ +   +f  + l ++l eaG+
       CCE28859.1 203 AFFQEAYRCCAPGGWVESLEYESEFrsddgstkLEPALASYGELFREAGTILnrPLFVKEILPQALDEAGF 273
                      ********************988877777776323333444477788877777788888888888888888 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0     4e-13   4.8e-10       1      97 []     128     216 ..     128     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 4e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +        +nv f+  da  ++  ++++f ++++++ +     +d+ ++++e++r++
       CCE28859.1 128 VLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVP-------PNVCFEIDDAtLEWTWDANHFAFIHMRYIVGG--IQDWTAFFQEAYRCC 212
                      9******************99**********9987654.......5779999999778999**********866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28859.1 213 APGG 216
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.6   1.9e+03      48      72 ..      17      42 ..       1      56 [. 0.67
   2 !   31.2   0.0   2.2e-10   2.6e-07       1      94 [.     129     218 ..     129     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.6
                     TTEECCCTSS-T.T-EEEEEEES-CC CS
  Methyltransf_11 48 vvadaeklpfed.nsfDlvvssevlh 72
                         ae++p+++ + +D ++s e+++
       CCE28859.1 17 DLIAAEDIPVNNqDEIDSIFSEEFVN 42
                     44568889887746999999999765 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 2.2e-10
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  +       v f   da+ +     n f ++ ++  +  ++d+ ++++e++R++ pg
       CCE28859.1 129 LDVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWVPPN-------VCFEIDDATlEWTWDANHFAFIHMRYIVGGIQDWTAFFQEAYRCCAPG 215
                      8**************9999*************9888332.......4444444443358999******************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28859.1 216 GWV 218
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       7.2   8.6e+03      71      71 ..      36      36 ..       3      83 .. 0.53
   2 ?   -2.1   0.0       5.7   6.8e+03      43      71 ..      79     110 ..      61     115 .. 0.69
   3 !   21.0   0.0   3.5e-07   0.00042       1      99 []     129     218 ..     129     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.2
  Methyltransf_12 71 v 71
                     +
       CCE28859.1 36 F 36
                     2 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.7
  Methyltransf_12  43 rennnnnnvelealdlldldgg...ssfDlvv 71 
                      ++ ++++ + ++ +d+ +l+++   ++f +++
       CCE28859.1  79 YHSDKFTTNYFFPNDDRQLESEelcHHFSTII 110
                      55566677777777777776667777777776 PP

  == domain 3  score: 21.0 bits;  conditional E-value: 3.5e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +               ++e+++  l+ + + ++f  +++   +  ++d+ +++++++++++
       CCE28859.1 129 LDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPPN---------VCFEIDDATLEWTWDANHFAFIHMRYIVGGIQDWTAFFQEAYRCCA 213
                      8*******************************9444444.........455555555444444467999************************* PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28859.1 214 PGGWV 218
                      ***85 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   5.9e-05      0.07      21      72 ..     124     177 ..      84     190 .. 0.84
   2 ?    3.9   0.0     0.044        53      29      39 ..     211     221 ..     209     244 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.9e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCC CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditd 72 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p+v +   d t 
  CCE28859.1 124 KIHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNVCFEIDDATL 177
                 6699***********9999999875.9**********998888888887777765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.044
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + l
  CCE28859.1 211 CCAPGGWVESL 221
                 9******9987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     2e-06    0.0023      21      63 ..     114     156 ..     102     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v  +d 
  CCE28859.1 114 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDL 156
                 79999*****9999**********************9998886 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.1   7.3e+03      72      88 ..      29      45 ..      21      50 .. 0.71
   2 !   15.8   0.0   7.6e-06    0.0091       5      38 ..     126     158 ..     122     160 .. 0.90
   3 ?   -1.3   0.0       1.4   1.7e+03      55     107 ..     167     218 ..     165     239 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.1
  Methyltransf_31 72 dekfDlilsnevlnala 88
                     ++ +D i+s e++n++ 
       CCE28859.1 29 QDEIDSIFSEEFVNLTV 45
                     37899999999988765 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 7.6e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a v+G D s+
       CCE28859.1 126 HRVLDVGTGSGIWAIEFA-DQFPNASVIGTDLSP 158
                      68****************.669*********987 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.4
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      nv Fe+ d++      +  + f +i+ + ++  + d  ++++e+ r   pgg +
       CCE28859.1 167 NVCFEIDDATLeWT--WDANHFAFIHMRYIVGGIQDWTAFFQEAYRCCAPGGWV 218
                      67788888877333..77899999999999999999999999999999999865 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.4e-06    0.0028     162     194 ..     125     158 ..     111     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.4e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a ++  ++v+++D+ +
  CCE28859.1 125 IHRVLDVGTGSGIWAIEfADQFPNASVIGTDLSP 158
                 369*************7477999********987 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.4e-06    0.0029       5      95 ..      65     157 ..      62     161 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.4e-06
                     HHHHHHTS--..HHHHHS--HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-GG..G-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2   5 adavregrnqiifkkafGislfeaikrdeeerakf..nkglqessslvakkvleafdle..glkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     a  v+e r   i+ +++    f+ ++  ++ +++    ++ ++ s+++ ++ l    le  ++++++DvG G+G  a + + ++P+ +vi  Dl+
      CCE28859.1  65 ASSVLEYR--QIYGRTYHSDKFTTNYFFPNDDRQLesEELCHHFSTIILDDQLFLAPLEkdKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 157
                     55667777..3788888888999888776666555115667778899999988777654227***************************999985 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.5e-05     0.017      31      83 ..     105     161 ..      98     188 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
  Methyltransf_16  31 ylekklake....lganelsklsvlELGsGtGlvGlavaellpeakviltDleelle 83 
                      ++++ + ++     + ++ +  +vl++G G+G+  + +a + p+a+vi tDl+  ++
       CCE28859.1 105 HFSTIILDDqlflAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQP 161
                      55555555555555556778889*****************************98654 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.8e-05     0.033      24      59 ..     123     158 ..     114     164 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE28859.1 123 DKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSP 158
                 44569**********************999999765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.1e-05     0.049       5      33 ..     128     156 ..     124     160 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.1e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28859.1 128 VLDVGTGSGIWAIEFADQFPNASVIGTDL 156
                     89************************876 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0013       1.5      49     154 ..     126     223 ..     116     230 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0013
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrv 142
                      ++vlDv +G+g +a++++d+   +  v++ D+++       + +  +   +i+     + e   + + f ++ + + +  + D +  ++eayr 
       CCE28859.1 126 HRVLDVGTGSGIWAIEFADQFP-NASVIGTDLSPCQP----QWVPPNVCFEID---DATLEWTWDANHFAFIHMRYIVGGIQDWTAFFQEAYRC 211
                      4789999999999999998875.45688888877432....333333333333...34455666778888888888888888999999999999 PP

                      EEEEEEEEEEEE CS
  Ubie_methyltran 143 lkpGGrlvvlef 154
                        pGG +  le+
       CCE28859.1 212 CAPGGWVESLEY 223
                      999998888886 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00046      0.55      61     101 ..     123     164 ..     113     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00046
                 -TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHH CS
        CMAS  61 kpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqakla 101
                 ++ +++Ld+G+G G  +++ ++++ +++v+g  lS  q +++
  CCE28859.1 123 DKIHRVLDVGTGSGIWAIEFADQFpNASVIGTDLSPCQPQWV 164
                 55579******************9789********9988776 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00016      0.19      69     103 ..     120     153 ..      97     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 le +k  rvL+vG+GsG+ +  +a  + +   v++
  CCE28859.1 120 LEKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VIG 153
                 6667889***********9999988776555.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2664.16
//
Query:       CCE28860.1  [L=99]
Description: uncharacterized protein CPUR_02550 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.042   13.4   0.1      0.052   13.0   0.1    1.0  1  Branch    Core-2/I-Branching enzyme


Domain annotation for each model (and alignments):
>> Branch  Core-2/I-Branching enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.9e-06     0.052      96     171 ..      20      93 ..      14      94 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.9e-06
                 ETTEEESS-HHHHHHHHHHTTT--B.--BEE--GGGG.HHHHEEEETTEEEEEEEE--SS--EEE-S--EEEHHHH CS
      Branch  96 sesdvplktfdeiykylsslkgknsfvdsfedpgekekkrykprildlmlpeikkeklalklrkGsqwfvlsRafa 171
                  + d+p+ ++dei +++s+ + ++  + s   + ++  +r  ++    +++ i++++ ++++     wf   Ra++
  CCE28860.1  20 AAEDIPVNDQDEINSIFSEDQSSTTSIASSVLEYRQIHGRTYHSDKFTTNYFIPNDDRQIEME--EIWFYSPRAHV 93 
                 689*****************999999************9999985555666777775544444..66666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 789.19
//
Query:       CCE28861.1  [L=559]
Description: uncharacterized protein CPUR_02551 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 4029.83
//
Query:       CCE28862.1  [L=340]
Description: uncharacterized protein CPUR_02552 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-19   69.8   0.0    3.5e-19   69.2   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    4.7e-12   46.4   0.0    1.6e-11   44.8   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    6.5e-11   42.7   0.0      4e-10   40.2   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
    1.4e-06   28.9   0.0    1.7e-05   25.4   0.0    2.6  2  Methyltransf_12  Methyltransferase domain
    9.6e-06   25.5   0.0     0.0085   15.9   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
     0.0002   20.8   0.0     0.0028   17.0   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00068   19.8   0.0      0.061   13.4   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
    0.00096   18.6   0.0      0.002   17.6   0.0    1.5  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0011   18.5   0.0     0.0023   17.5   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0052   16.1   0.0       0.01   15.1   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain
     0.0089   15.8   0.0       0.02   14.7   0.0    1.5  1  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.031   14.1   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
      0.021   14.3   0.0      0.046   13.2   0.0    1.5  1  Methyltransf_4   Putative methyltransferase
       0.08   12.7   0.0       0.12   12.1   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   2.7e-22   3.5e-19      15     125 ..      98     210 ..      79     293 .. 0.81

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 2.7e-22
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.....eaaepqgkfdlIvlrevlehvpdpp 99 
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++     ++++f e+     e++ ++++fd+I+ r+  + ++d++
       CCE28862.1  98 FLAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWVP-----PNVCF-EIddatlEWTWNDNHFDFIHVRYIVGGIEDWT 184
                      4555.4444445*******************87779************984.....44444.2212222666699******************* PP

  Methyltransf_23 100 ellrqiatllkpgGylllseplaslk 125
                      +l++ ++++++pgG+++ +e++++  
       CCE28862.1 185 ALFKEAYRCCAPGGWVESLEYDVEFR 210
                      ********************998873 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   1.2e-14   1.6e-11       1      97 []     110     198 ..     110     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 1.2e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +        +nv f+  da  ++  +d++fD++++++ +  +  ed+ +++ke++r++
       CCE28862.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVP-------PNVCFEIDDAtLEWTWNDNHFDFIHVRYIVGGI--EDWTALFKEAYRCC 194
                      9******************99**********9987653.......57799999997789************8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28862.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   2.4e+03      50      69 ..      19      39 ..       2      52 .. 0.74
   2 !   40.2   0.0   3.1e-13     4e-10       1      94 [.     111     200 ..     111     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
                     EECCCTSS-T.T-EEEEEEES CS
  Methyltransf_11 50 adaeklpfed.nsfDlvvsse 69
                       ae++p++d + +D ++s e
       CCE28862.1 19 IAAEDIPVNDqDEIDSIFSEE 39
                     568999999955999999976 PP

  == domain 2  score: 40.2 bits;  conditional E-value: 3.1e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  +       v f   da+ +   +dn fD++ ++  +  +ed+ +++ke++R++ pg
       CCE28862.1 111 LDVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWVPPN-------VCFEIDDATlEWTWNDNHFDFIHVRYIVGGIEDWTALFKEAYRCCAPG 197
                      8**************9999*************9888333.......4444445543368*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28862.1 198 GWV 200
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.8   4.9e+03      73      78 ..      48      53 ..      16      94 .. 0.56
   2 !   25.4   0.0   1.4e-08   1.7e-05       1      99 []     111     200 ..     111     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.8
  Methyltransf_12 73 snvlhh 78
                     s+vl++
       CCE28862.1 48 SSVLEY 53
                     333333 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1.4e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp +         ++ +  n ++e+++  l+ +   ++fD +++   +  ++d+ +++++++++++
       CCE28862.1 111 LDVGTGSGIWAIEFADQFPNASVIGTDLSPCQP--------QWVP-PNVCFEIDDATLEWTWNDNHFDFIHVRYIVGGIEDWTALFKEAYRCCA 195
                      8*******************************9........4443.34455555555544444469**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28862.1 196 PGGWV 200
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.6e-06    0.0085       5      38 ..     108     140 ..     104     142 .. 0.90
   2 !    7.2   0.0    0.0031         4      55     110 ..     149     203 ..     143     239 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.6e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a v+G D s+
       CCE28862.1 108 HRVLDVGTGSGIWAIEFA-DQFPNASVIGTDLSP 140
                      68****************.669*********987 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0031
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggillie 110
                      nv Fe+ d++      ++d+ fD+i+ + ++  + d  + ++e+ r   pgg + + 
       CCE28862.1 149 NVCFEIDDATLeWT--WNDNHFDFIHVRYIVGGIEDWTALFKEAYRCCAPGGWVESL 203
                      88899999998444..********************************999976555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.2e-06    0.0028      49     154 ..     108     205 ..      96     211 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.2e-06
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrv 142
                      ++vlDv +G+g +a++++d+   +  v++ D+++       + +  +   +i+     + e   +d+ fD++ v + +  + D +  +keayr 
       CCE28862.1 108 HRVLDVGTGSGIWAIEFADQFP-NASVIGTDLSPCQ----PQWVPPNVCFEID---DATLEWTWNDNHFDFIHVRYIVGGIEDWTALFKEAYRC 193
                      5789999999999999999875.5678899988754....3344444444444...456788999***************************** PP

                      EEEEEEEEEEEE CS
  Ubie_methyltran 143 lkpGGrlvvlef 154
                        pGG +  le+
       CCE28862.1 194 CAPGGWVESLEY 205
                      ********9997 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.8e-05     0.061      21      72 ..     106     159 ..      41     172 .. 0.86
   2 ?    4.2   0.0     0.033        42      29      40 ..     193     204 ..     190     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.8e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCC CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditd 72 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p+v +   d t 
  CCE28862.1 106 KIHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNVCFEIDDATL 159
                 6699***********9999999875.9**********998888888887777665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.033
                 T-TTSHHHHHHC CS
        FtsJ  29 gaaPGgwsqvll 40 
                 ++aPGgw + l 
  CCE28862.1 193 CCAPGGWVESLE 204
                 *******99875 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.1     4e+03      53      73 ..      27      47 ..      17      68 .. 0.56
   2 !   17.6   0.0   1.5e-06     0.002     162     195 ..     107     141 ..      92     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.1
        PrmA 53 keevkvkalfkeeteakelia 73
                +++ +++++f+ee++ +  ia
  CCE28862.1 27 NDQDEIDSIFSEEQSSTTSIA 47
                445555555555554443333 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.5e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                  ++vlDvGtGSGi ai  a ++  ++v+++D+ + 
  CCE28862.1 107 IHRVLDVGTGSGIWAIEfADQFPNASVIGTDLSPC 141
                 369*************7477999********9875 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.8e-06    0.0023      21      64 ..      96     139 ..      86     142 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.8e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v  +d +
  CCE28862.1  96 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 139
                 799999****9999**********************99988865 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     8e-06      0.01      17      95 ..      53     139 ..      41     143 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8e-06
                     HHHHHS--....HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-GG..G-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGis....lfeaikrdeeerakf..nkglqessslvakkvleafdle..glkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +++++G++     f+ ++  ++ +++    ++ ++ s++  ++ l    le  ++++++DvG G+G  a + + ++P+ +vi  Dl+
      CCE28862.1  53 YRQIHGRTyhsdKFTTNYFMPNDDQQLesEDLCHHFSTILLDDQLFLAPLEkdKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 139
                     444444444444777776665555444115666777888888877666654228***************************999985 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.5e-05      0.02      41      83 ..     101     143 ..      80     176 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
  Methyltransf_16  41 ganelsklsvlELGsGtGlvGlavaellpeakviltDleelle 83 
                      + ++ +  +vl++G G+G+  + +a + p+a+vi tDl+  ++
       CCE28862.1 101 PLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQP 143
                      456677789*****************************98654 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.4e-05     0.031      24      59 ..     105     140 ..      96     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE28862.1 105 DKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSP 140
                 44569**********************999999765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.6e-05     0.046       5      33 ..     110     138 ..     106     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28862.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDL 138
                     89************************876 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.4e-05      0.12      67     103 ..     100     135 ..      43     141 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.4e-05
                 HHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  67 ellelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                   le +k  rvL+vG+GsG+ +  +a  + +   v++
  CCE28862.1 100 APLEKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VIG 135
                 456678889************999988776555.665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2530.42
//
Query:       CCE28863.1  [L=356]
Description: uncharacterized protein CPUR_02553 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-20   72.4   0.1    1.8e-19   70.2   0.0    1.9  2  Methyltransf_23  Methyltransferase domain
    2.1e-12   47.6   0.0      8e-12   45.7   0.0    2.1  1  Methyltransf_25  Methyltransferase domain
    5.9e-11   42.9   0.0    1.8e-10   41.3   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
    8.2e-08   32.9   0.0    1.7e-06   28.6   0.0    2.9  2  Methyltransf_12  Methyltransferase domain
    1.1e-05   25.3   0.0       0.01   15.6   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
    0.00053   19.6   0.0     0.0014   18.2   0.0    1.6  1  MTS              Methyltransferase small domain
    0.00064   19.1   0.0     0.0086   15.4   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00087   18.8   0.0     0.0014   18.1   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0011   19.1   0.1      0.059   13.5   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.034   13.5   0.0    1.5  2  Methyltransf_2   O-methyltransferase domain
      0.017   14.9   0.0      0.029   14.1   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.029   14.1   0.0       0.05   13.4   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
      0.072   12.5   0.0       0.13   11.7   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.089   12.5   0.0       0.15   11.8   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
        0.2   11.0   0.0       0.33   10.3   0.0    1.3  1  GidB             rRNA small subunit methyltransferase G


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.81   9.7e+02      80      97 ..      11      28 ..       2      45 .. 0.78
   2 !   70.2   0.0   1.5e-22   1.8e-19      15     124 ..     114     225 ..      93     273 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.81
  Methyltransf_23 80 qgkfdlIvlrevlehvpd 97
                         dlI + +vleh +d
       CCE28863.1 11 GTGNDLIAAEDVLEHHED 28
                     446699*********886 PP

  == domain 2  score: 70.2 bits;  conditional E-value: 1.5e-22
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.....eaaepqgkfdlIvlrevlehvpdpp 99 
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++     ++++f e+     e++ ++++fd+I++r+  + ++d++
       CCE28863.1 114 FLAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSVVGTDLSPCQPQWVP-----PNVCF-EIddatlEWTWNDNHFDFIHMRYIVGGIEDWT 200
                      3444.4444456*******************8777*************984.....44444.2212222666699******************* PP

  Methyltransf_23 100 ellrqiatllkpgGylllseplasl 124
                      +l++ ++++++pgG+++  e+ ++ 
       CCE28863.1 201 ALFKEAYRCCAPGGWVESVEYESEI 225
                      *******************987654 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   6.7e-15     8e-12       1      97 []     126     214 ..     126     214 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 6.7e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +        +nv f+  da  ++  +d++fD++++++ +  +  ed+ +++ke++r++
       CCE28863.1 126 VLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQPQWVP-------PNVCFEIDDAtLEWTWNDNHFDFIHMRYIVGGI--EDWTALFKEAYRCC 210
                      9******************99**********9987653.......57799999997789************8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28863.1 211 APGG 214
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   1.5e-13   1.8e-10       1      94 [.     127     216 ..     127     217 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.5e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+vvg+Dls+ + +++  +       v f   da+ +   +dn fD++ ++  +  +ed+ +++ke++R++ pg
       CCE28863.1 127 LDVGTGSGIWAIEFADQFpnASVVGTDLSPCQPQWVPPN-------VCFEIDDATlEWTWNDNHFDFIHMRYIVGGIEDWTALFKEAYRCCAPG 213
                      8**************9999*************9888333.......4444445543368*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28863.1 214 GWV 216
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       2.1   2.6e+03      67      82 ..      14      30 ..       4      41 .. 0.75
   2 !   28.6   0.0   1.5e-09   1.7e-06       1      99 []     127     216 ..     127     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2.1
  Methyltransf_12 67 fDlvvasnvlhhl.kdi 82
                      Dl+ a +vl+h  +di
       CCE28863.1 14 NDLIAAEDVLEHHeDDI 30
                     59999999999985444 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.5e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp +         ++ +  n ++e+++  l+ +   ++fD +++   +  ++d+ +++++++++++
       CCE28863.1 127 LDVGTGSGIWAIEFADQFPNASVVGTDLSPCQP--------QWVP-PNVCFEIDDATLEWTWNDNHFDFIHMRYIVGGIEDWTALFKEAYRCCA 211
                      8*******************************9........4443.34455555555544444469**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28863.1 212 PGGWV 216
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   8.5e-06      0.01       5      38 ..     124     156 ..     120     158 .. 0.90
   2 !    7.5   0.0    0.0028       3.4      55     108 ..     165     217 ..     159     267 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.5e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a vvG D s+
       CCE28863.1 124 HRVLDVGTGSGIWAIEFA-DQFPNASVVGTDLSP 156
                      68****************.669*********987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0028
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggill 108
                      nv Fe+ d++      ++d+ fD+i+ + ++  + d  + ++e+ r   pgg + 
       CCE28863.1 165 NVCFEIDDATLeWT--WNDNHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGGWVE 217
                      88899999998444..*******************************99999765 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.2e-06    0.0014      21      64 ..     112     155 ..     109     158 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v+ +d +
  CCE28863.1 112 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 155
                 689999****9999************************999976 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.2e-06    0.0086      49     156 ..     124     223 ..     114     232 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.2e-06
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHH CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrv 142
                      ++vlDv +G+g +a++++d+   +  vv+ D+++       + +  +   +i+     + e   +d+ fD++ + + +  + D +  +keayr 
       CCE28863.1 124 HRVLDVGTGSGIWAIEFADQFP-NASVVGTDLSPCQP----QWVPPNVCFEID---DATLEWTWNDNHFDFIHMRYIVGGIEDWTALFKEAYRC 209
                      5789999999999999999975.56789999988543....344444444544...45678899****************************** PP

                      EEEEEEEEEEEE-- CS
  Ubie_methyltran 143 lkpGGrlvvlefsk 156
                        pGG +  +e+  
       CCE28863.1 210 CAPGGWVESVEYES 223
                      *******9999865 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.2e-06    0.0014     162     195 ..     123     157 ..     108     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.2e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDev 195
                  ++vlDvGtGSGi ai  a ++  ++vv++D+ + 
  CCE28863.1 123 IHRVLDVGTGSGIWAIEfADQFPNASVVGTDLSPC 157
                 369*************747799*********9875 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     5e-05     0.059      21      72 ..     122     175 ..      96     187 .. 0.83
   2 ?    3.3   0.0     0.064        76      29      39 ..     209     219 ..     206     241 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCC CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditd 72 
                 + ++v+D+g + G w+   + ++ + + vv+ Dl p++p    p+v +   d t 
  CCE28863.1 122 KIHRVLDVGTGSGIWAIEFADQFPN-ASVVGTDLSPCQPQwvpPNVCFEIDDATL 175
                 6799***********9999999875.9**********998888888887777665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.064
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28863.1 209 CCAPGGWVESV 219
                 *******9865 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.8e-05     0.034      17      95 ..      69     155 ..      59     159 .. 0.68
   2 ?   -3.4   0.0       4.2     5e+03     147     166 ..     201     220 ..     197     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.8e-05
                     HHHHHS--....HHHHHTSSHHHHHHH..HHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGis....lfeaikrdeeerakf..nkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +++++G++     f+a++  ++ +++    ++ ++  ++  ++ l        ++++++DvG G+G  a + + ++P+ +v+  Dl+
      CCE28863.1  69 YRQIHGRTyhsdKFTANYFIPNDDQQLesEELCHHFLTILLDDQLFLAPleKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 155
                     4444444433337777776655555441144555566777777666555115689*************************9999985 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.2
                     HHHHHHHHH--TT-EEEEEE CS
  Methyltransf_2 147 klLkrvkkalpagGkvivve 166
                      l k+ ++ + +gG v  ve
      CCE28863.1 201 ALFKEAYRCCAPGGWVESVE 220
                     68899999999999886665 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.4e-05     0.029      39      83 ..     112     159 ..      96     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
  Methyltransf_16  39 e...lganelsklsvlELGsGtGlvGlavaellpeakviltDleelle 83 
                      +    + ++ +  +vl++G G+G+  + +a + p+a+v+ tDl+  ++
       CCE28863.1 112 QlflAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLSPCQP 159
                      25554556777889*****************************98654 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.1e-05      0.05      24      58 ..     121     155 ..     113     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.1e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqd 58 
                 ++ +rvL++++G+G  A+ fA ++pn+    +d  
  CCE28863.1 121 DKIHRVLDVGTGSGIWAIEFADQFPNASVVGTDLS 155
                 44569**********************99988865 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.13       5      33 ..     126     154 ..     122     158 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28863.1 126 VLDVGTGSGIWAIEFADQFPNASVVGTDL 154
                     89***********************9875 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.15      69     104 ..     118     152 ..      97     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
                 TT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEE CS
        PCMT  69 lelkkgarvLevGsGsGyltavlarlvgekgrvvsi 104
                 le +k  rvL+vG+GsG+ +  +a  + +   vv+ 
  CCE28863.1 118 LEKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VVGT 152
                 5667889*************99998876665.6665 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00027      0.33      19      70 ..      93     144 ..      81     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00027
                 S---S--SHHHHHHHCHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHHHH- CS
        GidB  19 inLtsikepeellerhlldslsvlellkekrdkviDvGsGaGlPGipLaiar 70 
                   L s +  + +l+  l d l +++l k+k ++v+DvG+G G+ +i  a  +
  CCE28863.1  93 QQLESEELCHHFLTILLDDQLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQF 144
                 555566666677777777888888888888878*********9888776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2913.07
//
Query:       CCE28864.1  [L=358]
Description: uncharacterized protein CPUR_02554 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-19   69.8   0.0    3.7e-19   69.2   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    4.4e-12   46.6   0.0    1.9e-11   44.5   0.0    2.1  2  Methyltransf_25  Methyltransferase domain
    1.8e-11   44.5   0.0    4.3e-10   40.1   0.0    2.4  2  Methyltransf_11  Methyltransferase domain
    4.1e-07   30.7   0.0    2.6e-06   28.1   0.0    2.3  1  Methyltransf_12  Methyltransferase domain
    1.5e-05   24.8   0.0     0.0091   15.8   0.0    2.5  3  Methyltransf_31  Methyltransferase domain
     0.0013   18.3   0.0     0.0026   17.3   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0014   18.0   0.0       0.22   10.8   0.0    2.1  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0015   18.0   0.0     0.0027   17.1   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0038   17.4   0.0       0.22   11.6   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
      0.004   16.5   0.0      0.011   15.1   0.0    1.6  2  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.033   14.0   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
       0.02   14.3   0.2      0.049   13.1   0.0    1.7  2  Methyltransf_4   Putative methyltransferase
      0.025   14.3   0.0      0.044   13.5   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
      0.057   13.2   0.0      0.088   12.5   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   2.9e-22   3.7e-19      15     123 ..     116     226 ..      86     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 2.9e-22
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   e++ ++++fd+I++r+  + ++d+++l++
       CCE28864.1 116 FLAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWVPpNLCFEIDDAT--LEWTWNDNHFDFIHMRYIVGGIEDWTALFK 206
                      4555.4444456*******************87779************98542222223322..4666799*********************** PP

  Methyltransf_23 104 qiatllkpgGylllseplas 123
                       ++++++pgG+++  e++++
       CCE28864.1 207 EAYRCCAPGGWVESVEYDVE 226
                      ***************99876 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       7.6   9.8e+03      54      73 ..      20      39 ..       5      54 .. 0.69
   2 !   44.5   0.0   1.5e-14   1.9e-11       1      97 []     128     216 ..     128     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7.6
                     BCCGBSSSTT.TEEEEEEEST CS
  Methyltransf_25 54 daedlpfedg.sfDlvvssga 73
                      aed+p +d+ ++D ++s  +
       CCE28864.1 20 AAEDIPVNDQdEIDSIFS-EE 39
                     567888655448888888.34 PP

  == domain 2  score: 44.5 bits;  conditional E-value: 1.5e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  +d++fD++++++ +  +  ed+ +++ke++r++
       CCE28864.1 128 VLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPP-------NLCFEIDDAtLEWTWNDNHFDFIHMRYIVGGI--EDWTALFKEAYRCC 212
                      9******************99**********99887655.......55899999977899***********8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28864.1 213 APGG 216
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.35   4.5e+02      48      72 ..      17      42 ..       2      56 .. 0.76
   2 !   40.1   0.0   3.3e-13   4.3e-10       1      94 [.     129     218 ..     129     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.35
                     TTEECCCTSS-T.T-EEEEEEES-CC CS
  Methyltransf_11 48 vvadaeklpfed.nsfDlvvssevlh 72
                      v  ae++p++d + +D ++s e+++
       CCE28864.1 17 DVIAAEDIPVNDqDEIDSIFSEEFVN 42
                     566799******56*******99875 PP

  == domain 2  score: 40.1 bits;  conditional E-value: 3.3e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  +         f   da+ +   +dn fD++ ++  +  +ed+ +++ke++R++ pg
       CCE28864.1 129 LDVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWVPPNL-------CFEIDDATlEWTWNDNHFDFIHMRYIVGGIEDWTALFKEAYRCCAPG 215
                      8**************9999**************9983333.......333344442368*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28864.1 216 GWV 218
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0     2e-09   2.6e-06       1      99 []     129     218 ..     129     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     l +++++ + ++++++         ++fD +++   +  ++d+ +++++++++++
       CCE28864.1 129 LDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPPNLCFEIDDATLEWTWND---------NHFDFIHMRYIVGGIEDWTALFKEAYRCCA 213
                      8********************************6777777777766655555554.........48**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28864.1 214 PGGWV 218
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       5.8   7.4e+03      65      86 ..      23      43 ..      19      50 .. 0.71
   2 !   15.8   0.0   7.1e-06    0.0091       5      38 ..     126     158 ..     122     160 .. 0.90
   3 !    6.3   0.0     0.006       7.7      55     111 ..     167     222 ..     164     258 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.8
  Methyltransf_31 65 eleklled.ekfDlilsnevlna 86
                     +++  ++d + +D i+s e++n+
       CCE28864.1 23 DIP--VNDqDEIDSIFSEEFVNL 43
                     456..555588999999988865 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 7.1e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a v+G D s+
       CCE28864.1 126 HRVLDVGTGSGIWAIEFA-DQFPNASVIGTDLSP 158
                      68****************.669*********987 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.006
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggillied 111
                      n+ Fe+ d++      ++d+ fD+i+ + ++  + d  + ++e+ r   pgg + + +
       CCE28864.1 167 NLCFEIDDATLeWT--WNDNHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGGWVESVE 222
                      66688888887344..*********************************999776555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     2e-06    0.0026      21      64 ..     114     157 ..      97     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v  +d +
  CCE28864.1 114 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 157
                 789999****9999**********************99988865 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.011        14      49      81 ..     126     157 ..     116     163 .. 0.80
   2 !   10.8   0.0   0.00017      0.22     110     155 ..     179     224 ..     167     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++vlDv +G+g +a++++d+  +   v++ D++
       CCE28864.1 126 HRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLS 157
                      589***************99754.456666665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00017
                      -TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE- CS
  Ubie_methyltran 110 LpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefs 155
                         +d+ fD++ + + +  + D +  +keayr   pGG +  +e+ 
       CCE28864.1 179 WTWNDNHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGGWVESVEYD 224
                      56789***********************************999975 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.1e-06    0.0027     162     194 ..     125     158 ..     109     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.1e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a ++  ++v+++D+ +
  CCE28864.1 125 IHRVLDVGTGSGIWAIEfADQFPNASVIGTDLSP 158
                 369*************7477999********987 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00017      0.22      21      69 ..     124     174 ..      86     189 .. 0.80
   2 ?    3.4   0.0     0.058        74      29      39 ..     211     221 ..     208     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS- CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgd 69 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p++ +   d
  CCE28864.1 124 KIHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNLCFEIDD 174
                 5689***********9999999875.9**********987776666665555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.058
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28864.1 211 CCAPGGWVESV 221
                 *******9866 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.4e-06     0.011      19      95 ..      73     157 ..      61     163 .. 0.68
   2 ?   -2.2   0.0       1.7   2.1e+03     146     168 ..     202     224 ..     197     254 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.4e-06
                     HHHS--....HHHHHTS..SHHHHHHHHHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  19 kafGis....lfeaikr..deeerakfnkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +++G++     f+ +    +++ + k  +++++ss++  ++ l        ++++++DvG G+G  a + + ++P+ +vi  Dl+
      CCE28864.1  73 QIHGRTyhsdKFTTNFFfpNDDQQIKSEELFHHSSTILLDDQLFLAPleKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 157
                     4444443333444333200333344556777778888888777666611568***************************999985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
                     HHHHHHHHHH--TT-EEEEEE-- CS
  Methyltransf_2 146 vklLkrvkkalpagGkvivveav 168
                     + l k+ ++ + +gG v  ve  
      CCE28864.1 202 TALFKEAYRCCAPGGWVESVEYD 224
                     56889999999999999877754 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.6e-05     0.033      24      59 ..     123     158 ..     114     164 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE28864.1 123 DKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSP 158
                 44569**********************999999765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.8e-05     0.049       5      33 ..     128     156 ..     124     160 .. 0.92
   2 ?   -3.3   0.1       4.3   5.5e+03      79      89 ..     282     293 ..     278     294 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.8e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28864.1 128 VLDVGTGSGIWAIEFADQFPNASVIGTDL 156
                     89************************876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.3
                     ES-.----SGGG CS
  Methyltransf_4  79 lFP.DPwfKkrh 89 
                      FP  Pw K r+
      CCE28864.1 282 KFPiGPWAKDRK 293
                     67745****998 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.5e-05     0.044      44      82 ..     122     160 ..      98     186 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.5e-05
  Methyltransf_16  44 elsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      + +  +vl++G G+G+  + +a + p+a+vi tDl+  +
       CCE28864.1 122 KDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQ 160
                      566789****************************98765 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.9e-05     0.088      64     103 ..     115     153 ..      62     158 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.9e-05
                 HHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  64 lalellelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 l+l  le +k  rvL+vG+GsG+ +  +a  + +   v++
  CCE28864.1 115 LFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VIG 153
                 455667778999***********9999988776555.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2947.47
//
Query:       CCE28865.1  [L=351]
Description: uncharacterized protein CPUR_02555 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-19   70.4   0.0    2.5e-19   69.7   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    2.2e-11   44.3   0.0    6.4e-11   42.8   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    1.5e-09   38.4   0.0    3.8e-09   37.1   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    4.1e-07   30.7   0.0      3e-06   27.9   0.0    2.4  1  Methyltransf_12  Methyltransferase domain
     0.0002   21.2   0.0       0.01   15.7   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
     0.0017   17.8   0.0      0.003   17.0   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0027   17.3   0.0     0.0055   16.3   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0032   16.8   0.0     0.0075   15.6   0.0    1.5  2  Methyltransf_2   O-methyltransferase domain
     0.0038   17.4   0.0       0.22   11.6   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
     0.0073   15.7   0.0        1.1    8.5   0.0    2.2  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.038   13.8   0.0    1.5  1  DUF938           Protein of unknown function (DUF938)
      0.024   14.1   0.0      0.048   13.1   0.0    1.5  1  Methyltransf_4   Putative methyltransferase
      0.028   14.1   0.0      0.049   13.4   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
      0.073   12.8   0.0       0.12   12.1   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.11   11.7   0.0       0.54    9.5   0.0    2.1  2  CMAS             Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   2.1e-22   2.5e-19      15     160 ..     109     266 ..      79     268 .. 0.76

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 2.1e-22
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   e++ ++++fd+I++r+  + ++d+++l++
       CCE28865.1 109 FLAP-LERDKihRVLDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWVPpNLCFEIDDAT--LEWTWNANHFDFIHMRYIVGGIEDWTALFK 199
                      4555.3333345*******************87779************98542222223322..46667************************* PP

  Methyltransf_23 104 qiatllkpgGylllseplasl........kedrllldwlylvpagrhi..sffsarslkelleeaGl 160
                       ++++++pgG+++  e+  +          e  l+ + ++ ++ag+ +  s+f ++  ++++ eaG+
       CCE28865.1 200 EAYRCCAPGGWVESIEYEPEFrsddgtteLEPVLASYGELFREAGKILnrSLFVEEIQRQAFDEAGF 266
                      ****************877665556665334444444566677754446677777777777788877 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   5.4e-14   6.4e-11       1      97 []     121     209 ..     121     209 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 5.4e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  ++++fD++++++ +  +  ed+ +++ke++r++
       CCE28865.1 121 VLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPP-------NLCFEIDDAtLEWTWNANHFDFIHMRYIVGGI--EDWTALFKEAYRCC 205
                      9******************99**********99887655.......558999999778999**********8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28865.1 206 APGG 209
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   3.2e-12   3.8e-09       1      94 [.     122     211 ..     122     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 3.2e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  +         f   da+ +   + n fD++ ++  +  +ed+ +++ke++R++ pg
       CCE28865.1 122 LDVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWVPPNL-------CFEIDDATlEWTWNANHFDFIHMRYIVGGIEDWTALFKEAYRCCAPG 208
                      8**************9999**************9983333.......3333444423589********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28865.1 209 GWV 211
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.5e-09     3e-06       1      99 []     122     211 ..     122     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.5e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     l +++++ + +++++a+         +fD +++   +  ++d+ +++++++++++
       CCE28865.1 122 LDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPPNLCFEIDDATLEWTWNAN---------HFDFIHMRYIVGGIEDWTALFKEAYRCCA 206
                      8********************************66666666666666666666554.........7**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28865.1 207 PGGWV 211
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.4e-06      0.01       5      38 ..     119     151 ..     115     153 .. 0.90
   2 ?    3.2   0.0     0.058        69      55     107 ..     160     211 ..     157     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.4e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a v+G D s+
       CCE28865.1 119 HRVLDVGTGSGIWAIEFA-DQFPNASVIGTDLSP 151
                      58****************.669*********987 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.058
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      n+ Fe+ d++      ++ + fD+i+ + ++  + d  + ++e+ r   pgg +
       CCE28865.1 160 NLCFEIDDATLeWT--WNANHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGGWV 211
                      56678888877333..899***************************99999965 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.5e-06     0.003     162     194 ..     118     151 ..     103     163 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.5e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a ++  ++v+++D+ +
  CCE28865.1 118 IHRVLDVGTGSGIWAIEfADQFPNASVIGTDLSP 151
                 369*************7477999********987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.6e-06    0.0055      21      63 ..     107     149 ..      92     152 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.6e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +l+l  l+ ++ ++vlD+G+G G+ ++++a++ p+a+v  +d 
  CCE28865.1 107 QLFLAPLERDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDL 149
                 78999999999999**********************9998886 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.3e-06    0.0075      17      95 ..      64     150 ..      54     155 .. 0.70
   2 ?   -2.9   0.0       2.8   3.3e+03     146     167 ..     195     216 ..     191     245 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.3e-06
                     HHHHHS--....HHHHHT..SSHHHHHHHHHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGis....lfeaik..rdeeerakfnkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     +++++G++     f+ +    +++ ++k  +++++ss++  ++ l        ++++++DvG G+G  a + + ++P+ +vi  Dl+
      CCE28865.1  64 YRQIHGRTyhsdKFTTNFffPNDDQQLKSEELFHHSSTILLDDQLFLAPleRDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 150
                     444444443333444433113444556667788888888888877666611568***************************999985 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.8
                     HHHHHHHHHH--TT-EEEEEE- CS
  Methyltransf_2 146 vklLkrvkkalpagGkvivvea 167
                     + l k+ ++ + +gG v  +e 
      CCE28865.1 195 TALFKEAYRCCAPGGWVESIEY 216
                     5688899999999998866664 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00018      0.22      21      70 ..     117     168 ..      80     182 .. 0.80
   2 ?    3.4   0.0     0.062        74      29      39 ..     204     214 ..     201     235 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00018
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p++ +   d 
  CCE28865.1 117 KIHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNLCFEIDDA 168
                 5689***********9999999875.9**********9877766666655555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.062
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28865.1 204 CCAPGGWVESI 214
                 *******9866 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.012        15      49      81 ..     119     150 ..     109     155 .. 0.80
   2 !    8.5   0.0   0.00091       1.1     112     154 ..     174     216 ..     162     227 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.012
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++vlDv +G+g +a++++d+  +   v++ D++
       CCE28865.1 119 HRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLS 150
                      579***************99754.456666665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00091
                      TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 112 feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       + + fD++ + + +  + D +  +keayr   pGG +  +e+
       CCE28865.1 174 WNANHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGGWVESIEY 216
                      56689*********************************99996 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.2e-05     0.038      25      59 ..     117     151 ..     107     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.2e-05
      DUF938  25 ttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 + +rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE28865.1 117 KIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSP 151
                 4569**********************999999765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     4e-05     0.048       5      33 ..     121     149 ..     117     153 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28865.1 121 VLDVGTGSGIWAIEFADQFPNASVIGTDL 149
                     89************************876 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.1e-05     0.049      44      82 ..     115     153 ..      93     178 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.1e-05
  Methyltransf_16  44 elsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      + +  +vl++G G+G+  + +a + p+a+vi tDl+  +
       CCE28865.1 115 RDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQ 153
                      556679****************************98765 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0    0.0001      0.12      66     103 ..     110     146 ..      64     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
                 HHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  66 lellelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 l  le +k  rvL+vG+GsG+ +  +a  + +   v++
  CCE28865.1 110 LAPLERDKIHRVLDVGTGSGIWAIEFADQFPNAS-VIG 146
                 5556778999************999988776555.655 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00046      0.54      60     101 ..     115     157 ..      83     212 .. 0.88
   2 ?   -0.6   0.0      0.53   6.4e+02     150     193 ..     234     279 ..     210     292 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00046
                 --TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHH CS
        CMAS  60 lkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqakla 101
                  ++ +++Ld+G+G G  +++ ++++ +++v+g  lS  q +++
  CCE28865.1 115 RDKIHRVLDVGTGSGIWAIEFADQFpNASVIGTDLSPCQPQWV 157
                 555679******************9789********9887765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.53
                 HHHHHHS-TT-EEEEEEEEE--HHHHHCTTCCC..HHHHHHTSTTS CS
        CMAS 150 kklkkllkedGllllhtitslhkkelaerglkl..kfidkeiFPgG 193
                 +   +l +e G +l+++++  + + +a  +     k + ++ FP G
  CCE28865.1 234 ASYGELFREAGKILNRSLFVEEIQRQAFDEAGFidKRVVRYKFPIG 279
                 5566788999999999999887777665443212255556667776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2522.44
//
Query:       CCE28866.1  [L=363]
Description: uncharacterized protein CPUR_02556 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-19   68.3   0.0      1e-18   67.7   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    6.7e-12   46.0   0.0      2e-11   44.5   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    1.5e-10   41.6   0.0    5.8e-10   39.7   0.0    2.0  2  Methyltransf_11  Methyltransferase domain
    3.4e-07   30.9   0.0    2.2e-06   28.3   0.0    2.3  1  Methyltransf_12  Methyltransferase domain
      1e-05   25.4   0.0     0.0076   16.1   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
     0.0018   17.6   0.0        0.3   10.4   0.0    2.2  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0023   17.4   0.0     0.0039   16.6   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0095   16.1   0.1       0.68   10.0   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.022   14.5   0.0      0.041   13.6   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
      0.025   14.0   0.0      0.046   13.2   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      0.048   13.4   0.0        0.1   12.4   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
      0.063   12.6   0.0        0.1   11.9   0.0    1.4  1  CMAS             Mycolic acid cyclopropane synthetase
      0.073   12.6   0.0       0.16   11.5   0.0    1.5  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   7.4e-22     1e-18      24     124 ..     124     232 ..      96     279 .. 0.79

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 7.4e-22
  Methyltransf_23  24 g.......rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiat 107
                      +       rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   e++ ++++fd+I++r+  + ++d+++l++ +++
       CCE28866.1 124 KihvganwRVLDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWVPpNLCFEIDDAT--LEWTWNDNHFDFIHMRYIVGGIEDWTALFQEAYR 215
                      445555669******************87779************98542222223322..4666799*************************** PP

  Methyltransf_23 108 llkpgGylllseplasl 124
                      +++pgG+++ +e+  + 
       CCE28866.1 216 CCAPGGWVESLEYEPEF 232
                      ***********987655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.4e-14     2e-11       1      97 []     133     221 ..     133     221 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 1.4e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  +d++fD++++++ +  +  ed+ ++++e++r++
       CCE28866.1 133 VLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPP-------NLCFEIDDAtLEWTWNDNHFDFIHMRYIVGGI--EDWTALFQEAYRCC 217
                      9******************99**********99887655.......55899999977899***********8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28866.1 218 APGG 221
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         4   5.6e+03      52      72 ..      21      42 ..       3      56 .. 0.67
   2 !   39.7   0.0   4.2e-13   5.8e-10       1      94 [.     134     223 ..     134     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4
                     CCCTSS-T.T-EEEEEEES-CC CS
  Methyltransf_11 52 aeklpfed.nsfDlvvssevlh 72
                     ae++ ++d + +D ++s e+++
       CCE28866.1 21 AEDITINDqDEIDSIFSVEFVN 42
                     5566666634888888887654 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 4.2e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  +         f   da+ +   +dn fD++ ++  +  +ed+ ++++e++R++ pg
       CCE28866.1 134 LDVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWVPPNL-------CFEIDDATlEWTWNDNHFDFIHMRYIVGGIEDWTALFQEAYRCCAPG 220
                      8**************9999**************9983333.......333344442368*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28866.1 221 GWV 223
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.6e-09   2.2e-06       1      99 []     134     223 ..     134     223 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.6e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     l +++++ + ++++++         ++fD +++   +  ++d+ +++++++++++
       CCE28866.1 134 LDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPPNLCFEIDDATLEWTWND---------NHFDFIHMRYIVGGIEDWTALFQEAYRCCA 218
                      8********************************6777777777766655555554.........48**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28866.1 219 PGGWV 223
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.5e-06    0.0076       4      38 ..     130     163 ..     128     165 .. 0.91
   2 !    7.0   0.0    0.0034       4.6      55     107 ..     172     223 ..     169     275 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.5e-06
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                      + rvlD+G+G+G  ++e+a   +p+a v+G D s+
       CCE28866.1 130 NWRVLDVGTGSGIWAIEFA-DQFPNASVIGTDLSP 163
                      679****************.669*********987 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0034
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      n+ Fe+ d++      ++d+ fD+i+ + ++  + d  + ++e+ r   pgg +
       CCE28866.1 172 NLCFEIDDATLeWT--WNDNHFDFIHMRYIVGGIEDWTALFQEAYRCCAPGGWV 223
                      66688888887344..**********************************9976 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.011        16      49      81 ..     131     162 ..     119     168 .. 0.79
   2 !   10.4   0.0   0.00021       0.3     110     154 ..     184     228 ..     172     234 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.011
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                       +vlDv +G+g +a++++d+  +   v++ D++
       CCE28866.1 131 WRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLS 162
                      479***************99754.456666665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00021
                      -TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 110 LpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                         +d+ fD++ + + +  + D +  ++eayr   pGG +  le+
       CCE28866.1 184 WTWNDNHFDFIHMRYIVGGIEDWTALFQEAYRCCAPGGWVESLEY 228
                      56789************************************9997 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.8e-06    0.0039     161     194 ..     129     163 ..     110     181 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.8e-06
        PrmA 161 egeevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                 ++ +vlDvGtGSGi ai  a ++  ++v+++D+ +
  CCE28866.1 129 ANWRVLDVGTGSGIWAIEfADQFPNASVIGTDLSP 163
                 4558*************7477999********987 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00049      0.68      20      69 ..     128     179 ..     110     193 .. 0.79
   2 ?    3.7   0.0     0.043        60      29      39 ..     216     226 ..     214     250 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00049
                 -TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS- CS
        FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgd 69 
                   + +v+D+g + G w+   + ++ + + v++ Dl p++p    p++ +   d
  CCE28866.1 128 GANWRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNLCFEIDD 179
                 35677***********9999999875.9**********987766666665555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.043
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + l
  CCE28866.1 216 CCAPGGWVESL 226
                 9******9977 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.9e-05     0.041      43      82 ..     126     165 ..     103     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.9e-05
  Methyltransf_16  43 nelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      +  ++ +vl++G G+G+  + +a + p+a+vi tDl+  +
       CCE28866.1 126 HVGANWRVLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQ 165
                      5567889****************************98765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.3e-05     0.046       5      33 ..     133     161 ..     129     165 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.3e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28866.1 133 VLDVGTGSGIWAIEFADQFPNASVIGTDL 161
                     89************************876 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.3e-05       0.1      28      59 ..     132     163 ..     119     169 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.3e-05
      DUF938  28 rvLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE28866.1 132 RVLDVGTGSGIWAIEFADQFPNASVIGTDLSP 163
                 8**********************999999765 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.4e-05       0.1      53     101 ..     120     169 ..      73     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.4e-05
                 HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHH CS
        CMAS  53 lileklelkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqakla 101
                 l  +k+++ +  ++Ld+G+G G  +++ ++++ +++v+g  lS  q +++
  CCE28866.1 120 LEKDKIHVGANWRVLDVGTGSGIWAIEFADQFpNASVIGTDLSPCQPQWV 169
                 556888899999*******************9789********9887775 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.16      31      64 ..     129     162 ..     113     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 ++ +vlD+G+G G+ ++++a++ p+a+v  +d +
  CCE28866.1 129 ANWRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 162
                 5567**********************99988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2854.04
//
Query:       CCE28867.1  [L=338]
Description: uncharacterized protein CPUR_02557 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-14   54.6   0.0    1.6e-14   54.1   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.6e-07   31.9   0.0    6.8e-07   29.9   0.0    2.1  2  Methyltransf_25  Methyltransferase domain
    3.1e-06   27.7   0.0    1.2e-05   25.9   0.0    1.9  2  Methyltransf_11  Methyltransferase domain
    0.00019   22.1   0.0      0.003   18.3   0.0    2.8  2  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
       0.06   13.1   0.0        1.8    8.4   0.0    2.4  2  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   4.4e-18   1.6e-14      16     127 ..      99     210 ..      76     253 .. 0.79

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 4.4e-18
  Methyltransf_23  16 llpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.....eaaepqgkfdlIvlrevlehvpdppel 101
                      l+p  +++  rvLd+G+G+G   +++++++   sv+g Dlsp + ++++     ++++f e+     e++ + ++f++I++r+  + ++d+++l
       CCE28867.1  99 LAPLaKDKIHRVLDVGTGHG--IREFADQFPnaSVIGTDLSPCQPQWVP-----PNVCF-EIddatlEWTWNPNHFEFIHMRYIVGGIQDWTAL 184
                      4432134445**********..789989977679************984.....44444.22122225556999******************** PP

  Methyltransf_23 102 lrqiatllkpgGylllseplaslked 127
                      ++ ++++++pgG+++  e+  + ++d
       CCE28867.1 185 FQEAYRCCAPGGWVESVEYEPEFHSD 210
                      ******************98777554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.9e-10   6.8e-07       1      97 []     110     196 ..     110     196 .. 0.88
   2 ?   -3.4   0.0       4.6   1.7e+04      14      37 ..     229     251 ..     224     252 .. 0.65

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.9e-10
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G  ++++a+++++a+v+g+D+s+ + + +        +nv f+  da  ++  + ++f ++++++ +     +d+ ++++e++r++
       CCE28867.1 110 VLDVGTGHG--IREFADQFPNASVIGTDLSPCQPQWVP-------PNVCFEIDDAtLEWTWNPNHFEFIHMRYIVGG--IQDWTALFQEAYRCC 192
                      899999999..89******99**********9987654.......5779999999778999**********866554..569************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28867.1 193 APGG 196
                      ***9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.6
                      HHHCTSTSSEEEEEESSHHHHHHH CS
  Methyltransf_25  14 alakrlgkakvtgvDiseemleaa 37 
                      +++k l +  +   Di++++le+a
       CCE28867.1 229 KASKTL-NRPLFVKDIQPQALEKA 251
                      555555.46667778999988876 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.1   7.5e+03      52      69 ..      21      39 ..       3      49 .. 0.76
   2 !   25.9   0.0   3.3e-09   1.2e-05       2      94 ..     112     198 ..     111     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.1
                     CCCTSS-T.T-EEEEEEES CS
  Methyltransf_11 52 aeklpfed.nsfDlvvsse 69
                      e++p++d + +D ++s e
       CCE28867.1 21 GEDIPVNDqDEIDSIFSEE 39
                     6789999955999999875 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 3.3e-09
                      EET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      dv  GtG   +++a+++  a+v+g+Dls+ + +++  +       v f   da+ +   + n f ++ ++  +  ++d+ ++++e++R++ pgG
       CCE28867.1 112 DV--GTGHGIREFADQFpnASVIGTDLSPCQPQWVPPN-------VCFEIDDATlEWTWNPNHFEFIHMRYIVGGIQDWTALFQEAYRCCAPGG 196
                      55..7888899***9999*************9888332.......4444444443358999********************************* PP

                      EE CS
  Methyltransf_11  93 ll 94 
                      ++
       CCE28867.1 197 WV 198
                      85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1   4.1e+03      66      78 ..      41      53 ..       3      87 .. 0.62
   2 !   18.3   0.0   8.3e-07     0.003       2      99 .]     112     198 ..     111     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
  Methyltransf_12 66 sfDlvvasnvlhh 78
                     s  + +as+vl++
       CCE28867.1 41 SSTTSIASSVLEY 53
                     4444445555554 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 8.3e-07
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLkp 95 
                      ++  GtG+ +r++++++p+++++g+D+sp +         ++ +  n ++e+++  l+ +  +++f  +++   +  ++d+ +++++++++++p
       CCE28867.1 112 DV--GTGHGIREFADQFPNASVIGTDLSPCQP--------QWVP-PNVCFEIDDATLEWTWNPNHFEFIHMRYIVGGIQDWTALFQEAYRCCAP 194
                      55..55566*********************99........5554.55666666666666666689***************************** PP

  Methyltransf_12  96 gGrl 99 
                      gG++
       CCE28867.1 195 GGWV 198
                      **85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00049       1.8       5      38 ..     108     138 ..     104     140 .. 0.82
   2 ?    1.9   0.0     0.048   1.7e+02      55     107 ..     147     198 ..     143     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00049
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G G  + e+a   +p+a v+G D s+
       CCE28867.1 108 HRVLDVGTGHG--IREFA-DQFPNASVIGTDLSP 138
                      689***99996..77778.6699********986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.048
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggil 107
                      nv Fe+ d++      ++++ f +i+ + ++  + d  + ++e+ r   pgg +
       CCE28867.1 147 NVCFEIDDATLeWT--WNPNHFEFIHMRYIVGGIQDWTALFQEAYRCCAPGGWV 198
                      78899999998444..999****************************9999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2433.35
//
Query:       CCE28868.1  [L=358]
Description: uncharacterized protein CPUR_02558 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-20   73.0   0.0    3.8e-20   72.4   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    2.1e-12   47.6   0.0    6.6e-12   46.0   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    8.2e-11   42.4   0.0      3e-10   40.6   0.0    1.9  2  Methyltransf_11  Methyltransferase domain
    5.5e-07   30.2   0.0    5.2e-06   27.1   0.0    2.5  1  Methyltransf_12  Methyltransferase domain
      7e-05   22.7   0.0     0.0091   15.8   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
    0.00086   18.7   0.0      0.022   14.1   0.0    2.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0012   18.4   0.0     0.0024   17.4   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0016   17.9   0.0     0.0029   17.1   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.005   17.0   0.0       0.25   11.4   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
     0.0092   15.3   0.0      0.026   13.8   0.0    1.7  2  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.034   13.9   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
      0.022   14.5   0.0      0.038   13.7   0.0    1.4  1  Methyltransf_16  Lysine methyltransferase
      0.024   14.1   0.0      0.049   13.1   0.0    1.5  1  Methyltransf_4   Putative methyltransferase
      0.076   12.8   0.0       0.12   12.1   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0     3e-23   3.8e-20      15     126 ..     116     229 ..      84     280 .. 0.82

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 3e-23
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq.eaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++  ++  ++  d++ e+++++++fd+I++r+  + ++d+++l++
       CCE28868.1 116 FLAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWVP--PNLCFEIDDAMlEWTYDDNHFDFIHMRYIVGGIEDWTALFK 206
                      4554.4444456*******************87779************984..33334444344588899************************ PP

  Methyltransf_23 104 qiatllkpgGylllseplaslke 126
                       ++++++pgG+++  e++a+  +
       CCE28868.1 207 EAYRCCAPGGWVESVEYDAEFRS 229
                      *****************998743 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   5.1e-15   6.6e-12       1      97 []     128     216 ..     128     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 5.1e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +  +       + f+  da  ++ ++d++fD++++++ +  +  ed+ +++ke++r++
       CCE28868.1 128 VLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPPN-------LCFEIDDAmLEWTYDDNHFDFIHMRYIVGGI--EDWTALFKEAYRCC 212
                      9******************99**********998876555.......58988888799*************8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28868.1 213 APGG 216
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       7.2   9.3e+03      55      72 ..      24      42 ..      18      55 .. 0.61
   2 !   40.6   0.0   2.4e-13     3e-10       1      94 [.     129     218 ..     129     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 7.2
                     TSS-T.T-EEEEEEES-CC CS
  Methyltransf_11 55 lpfed.nsfDlvvssevlh 72
                     + ++d + +D ++s e+++
       CCE28868.1 24 ISVNDqDEIDSIFSVEFVN 42
                     5555534677777766543 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 2.4e-13
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  +   e      +   + +  + dn fD++ ++  +  +ed+ +++ke++R++ pgG
       CCE28868.1 129 LDVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWVPPNLCFE------IDDAMLEWTYDDNHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGG 216
                      8**************9999**************9994444333......233333578************************************ PP

                      EE CS
  Methyltransf_11  93 ll 94 
                      ++
       CCE28868.1 217 WV 218
                      85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     4e-09   5.2e-06       1      99 []     129     218 ..     129     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 4e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     l +++++   +++++++         +fD +++   +  ++d+ +++++++++++
       CCE28868.1 129 LDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPPNLCFEIDDAMLEWTYDDN---------HFDFIHMRYIVGGIEDWTALFKEAYRCCA 213
                      8********************************77777777777666555555433.........8**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28868.1 214 PGGWV 218
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.1e-06    0.0091       5      38 ..     126     158 ..     122     160 .. 0.90
   2 ?    4.5   0.0     0.021        27      59     113 ..     171     224 ..     165     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.1e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a v+G D s+
       CCE28868.1 126 HRVLDVGTGSGIWAIEFA-DQFPNASVIGTDLSP 158
                      68****************.669*********987 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.021
  Methyltransf_31  59 eqgdieelekl.ledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      e+ d+    +  + d+ fD+i+ + ++  + d  + ++e+ r   pgg + + +++
       CCE28868.1 171 EIDDAML--EWtYDDNHFDFIHMRYIVGGIEDWTALFKEAYRCCAPGGWVESVEYD 224
                      4444444..333999*******************************9987666665 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.7e-05     0.022      50     154 ..     127     223 ..     116     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
                      EEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHE CS
  Ubie_methyltran  50 kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvl 143
                      +vlDv +G+g +a++++d+   +  v++ D+++       + +  +   +i+       e  ++d+ fD++ + + +  + D +  +keayr  
       CCE28868.1 127 RVLDVGTGSGIWAIEFADQFP-NASVIGTDLSPCQP----QWVPPNLCFEID---DAMLEWTYDDNHFDFIHMRYIVGGIEDWTALFKEAYRCC 212
                      688888888888888888875.45688888887543....333333333443...233478899****************************** PP

                      EEEEEEEEEEE CS
  Ubie_methyltran 144 kpGGrlvvlef 154
                       pGG +  +e+
       CCE28868.1 213 APGGWVESVEY 223
                      *****999986 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.9e-06    0.0024      21      63 ..     114     156 ..     100     159 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.9e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v  +d 
  CCE28868.1 114 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDL 156
                 799999****9999**********************9998886 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.2e-06    0.0029     162     194 ..     125     158 ..     111     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.2e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a ++  ++v+++D+ +
  CCE28868.1 125 IHRVLDVGTGSGIWAIEfADQFPNASVIGTDLSP 158
                 369*************7477999********987 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0    0.0002      0.25      21      64 ..     124     169 ..      80     187 .. 0.79
   2 ?    3.2   0.0     0.065        83      29      39 ..     211     221 ..     208     243 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEE CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvt 64 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p++ 
  CCE28868.1 124 KIHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNLC 169
                 5589***********9999999875.9**********9876655555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.065
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28868.1 211 CCAPGGWVESV 221
                 *******9865 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     2e-05     0.026      35      95 ..      95     157 ..      61     164 .. 0.68
   2 ?   -2.3   0.0       1.8   2.3e+03     146     168 ..     202     224 ..     197     253 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
                     HHHHHHHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  35 erakfnkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                      + k  +++++ s++  ++ l        ++++++DvG G+G  a + + ++P+ +vi  Dl+
      CCE28868.1  95 QQIKSEELFHHFSTILLDDQLFLAPleKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 157
                     3334456666667777777665555115689**************************999985 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
                     HHHHHHHHHH--TT-EEEEEE-- CS
  Methyltransf_2 146 vklLkrvkkalpagGkvivveav 168
                     + l k+ ++ + +gG v  ve  
      CCE28868.1 202 TALFKEAYRCCAPGGWVESVEYD 224
                     56889999999999998777754 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.7e-05     0.034      24      59 ..     123     158 ..     115     164 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE28868.1 123 DKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSP 158
                 44569**********************999999765 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     3e-05     0.038      43      82 ..     121     160 ..      98     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-05
  Methyltransf_16  43 nelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      ++ +  +vl++G G+G+  + +a + p+a+vi tDl+  +
       CCE28868.1 121 EKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQ 160
                      5667789****************************98765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.8e-05     0.049       5      33 ..     128     156 ..     124     160 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.8e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28868.1 128 VLDVGTGSGIWAIEFADQFPNASVIGTDL 156
                     89************************876 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.3e-05      0.12      66     103 ..     117     153 ..      67     158 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-05
                 HHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  66 lellelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 l  le +k  rvL+vG+GsG+ +  +a  + +   v++
  CCE28868.1 117 LAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VIG 153
                 5556678899***********9999988776555.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2808.66
//
Query:       CCE28869.1  [L=340]
Description: uncharacterized protein CPUR_02559 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-20   71.1   0.0    1.4e-19   70.5   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.8e-10   41.4   0.0    5.9e-10   39.7   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    2.4e-08   34.5   0.0    1.1e-07   32.4   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
    9.4e-06   26.3   0.0    7.7e-05   23.4   0.0    2.4  2  Methyltransf_12  Methyltransferase domain
    0.00052   19.8   0.0     0.0085   15.9   0.0    2.2  2  Methyltransf_31  Methyltransferase domain
      0.001   18.6   0.0     0.0026   17.2   0.0    1.6  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0011   18.6   0.0     0.0022   17.5   0.0    1.5  1  MTS              Methyltransferase small domain
      0.003   17.7   0.0       0.16   12.0   0.0    2.3  2  FtsJ             FtsJ-like methyltransferase
     0.0093   15.3   0.0      0.021   14.2   0.0    1.5  2  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.032   14.0   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
      0.018   14.8   0.0      0.036   13.8   0.0    1.5  1  Methyltransf_16  Lysine methyltransferase
      0.024   14.1   0.5      0.046   13.2   0.0    1.7  2  Methyltransf_4   Putative methyltransferase
      0.063   13.0   0.0      0.094   12.5   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.071   12.4   0.0         12    5.2   0.0    2.1  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   1.1e-22   1.4e-19      15     125 ..      98     218 ..      67     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 1.1e-22
  Methyltransf_23  15 rllpklragg..rvLdiGcGtGillevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p l++++  rvLd+G+G+Gi++ ++++++   sv+g Dlsp + ++++ +  + ++d +   e++ ++++f++I++r+  + ++d+++l++
       CCE28869.1  98 FLAP-LEKDKihRVLDVGTGSGIWAIEFADQFPnaSVIGTDLSPCQPQWVPpNLCFEIDDAT--LEWTWNANHFNFIHMRYIVGGIEDWTALFK 188
                      4554.4444456*******************87779************98542222223322..46667************************* PP

  Methyltransf_23 104 qiatllkpgGylllseplasl........k 125
                       ++++++pgG+++  e++a+          
       CCE28869.1 189 EAYRCCAPGGWVESVEYDAEFrsddgsteL 218
                      *****************9988555554432 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   4.6e-13   5.9e-10       1      97 []     110     198 ..     110     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 4.6e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+G+G+G +++++a+++++a+v+g+D+s+ + + +         n+ f+  da  ++  ++++f+++++++ +  +  ed+ +++ke++r++
       CCE28869.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPP-------NLCFEIDDAtLEWTWNANHFNFIHMRYIVGGI--EDWTALFKEAYRCC 194
                      9******************99**********99887655.......558999999778999**********8665555..69************ PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       pgG
       CCE28869.1 195 APGG 198
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.6   4.7e+03      52      69 ..      21      39 ..       7      51 .. 0.84
   2 !   32.4   0.0   8.8e-11   1.1e-07       1      94 [.     111     200 ..     111     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.6
                     CCCTSS-T.T-EEEEEEES CS
  Methyltransf_11 52 aeklpfed.nsfDlvvsse 69
                     ae++p++d + +D ++s e
       CCE28869.1 21 AEDIPVNDqDEIDSIFSEE 39
                     7899999955999999976 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 8.8e-11
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvG+G+G+ a ++a+++  a+v+g+Dls+ + +++  +         f   da+ +   + n f ++ ++  +  +ed+ +++ke++R++ pg
       CCE28869.1 111 LDVGTGSGIWAIEFADQFpnASVIGTDLSPCQPQWVPPNL-------CFEIDDATlEWTWNANHFNFIHMRYIVGGIEDWTALFKEAYRCCAPG 197
                      8**************9999**************9983333.......3333444423589********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28869.1 198 GWV 200
                      *85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.2   6.7e+03      72      78 ..      47      53 ..      20      93 .. 0.58
   2 !   23.4   0.0     6e-08   7.7e-05       1      99 []     111     200 ..     111     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.2
  Methyltransf_12 72 asnvlhh 78
                     as+vl++
       CCE28869.1 47 ASSVLEY 53
                     4444444 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 6e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G  + ++++++p+++++g+D+sp + +     l +++++ + +++++a+         +f  +++   +  ++d+ +++++++++++
       CCE28869.1 111 LDVGTGSGIWAIEFADQFPNASVIGTDLSPCQPQWVPPNLCFEIDDATLEWTWNAN---------HFNFIHMRYIVGGIEDWTALFKEAYRCCA 195
                      8********************************66666666666666666666655.........7**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE28869.1 196 PGGWV 200
                      ***85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.6e-06    0.0085       5      38 ..     108     140 ..     104     142 .. 0.90
   2 ?    1.3   0.0       0.2   2.6e+02      55     113 ..     149     206 ..     147     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.6e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDise 38 
                       rvlD+G+G+G  ++e+a   +p+a v+G D s+
       CCE28869.1 108 HRVLDVGTGSGIWAIEFA-DQFPNASVIGTDLSP 140
                      68****************.669*********987 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.2
  Methyltransf_31  55 nveFeqgdiee.leklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      n+ Fe+ d++      ++ + f++i+ + ++  + d  + ++e+ r   pgg + + +++
       CCE28869.1 149 NLCFEIDDATLeWT--WNANHFNFIHMRYIVGGIEDWTALFKEAYRCCAPGGWVESVEYD 206
                      56677777777333..8899**************************99999987666665 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.3   2.9e+03      52      73 ..      26      47 ..      10      68 .. 0.60
   2 !   17.2   0.0     2e-06    0.0026     162     194 ..     107     140 ..      92     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.3
        PrmA 52 lkeevkvkalfkeeteakelia 73
                ++++ +++++f+ee++ +  ia
  CCE28869.1 26 VNDQDEIDSIFSEEQSSTTSIA 47
                4555666666666655444333 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2e-06
        PrmA 162 geevlDvGtGSGiLaia.aakLgakkvvavDiDe 194
                  ++vlDvGtGSGi ai  a ++  ++v+++D+ +
  CCE28869.1 107 IHRVLDVGTGSGIWAIEfADQFPNASVIGTDLSP 140
                 369*************7477999********987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.8e-06    0.0022      21      63 ..      96     138 ..      82     141 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.8e-06
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEES CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdv 63 
                 +l+l  l+k++ ++vlD+G+G G+ ++++a++ p+a+v  +d 
  CCE28869.1  96 QLFLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDL 138
                 799999****9999**********************9998886 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00013      0.16      21      70 ..     106     157 ..      61     170 .. 0.79
   2 ?    3.3   0.0      0.06        77      29      39 ..     193     203 ..     190     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-C CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdi 70 
                 + ++v+D+g + G w+   + ++ + + v++ Dl p++p    p++ +   d 
  CCE28869.1 106 KIHRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLSPCQPQwvpPNLCFEIDDA 157
                 5589***********9999999875.9**********9877766666655555 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.06
                 T-TTSHHHHHH CS
        FtsJ  29 gaaPGgwsqvl 39 
                 ++aPGgw + +
  CCE28869.1 193 CCAPGGWVESV 203
                 *******9865 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.6e-05     0.021      17      95 ..      53     139 ..      40     144 .. 0.68
   2 ?   -3.2   0.0       3.2   4.1e+03     147     166 ..     185     204 ..     181     219 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
                     HHHHHS--....HHHHHTS..SHHHHHHHHHHHHTTHHHHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-H CS
  Methyltransf_2  17 fkkafGis....lfeaikr..deeerakfnkglqessslvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlp 95 
                     ++k++G++     f+ +    +++ + k  +++++ s++  ++ l        ++++++DvG G+G  a + + ++P+ +vi  Dl+
      CCE28869.1  53 YRKIHGRTyhsdKFTTNFFfpNDDQQIKSEELFHHFSTILLDDQLFLAPleKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLS 139
                     5555555544443333322002333344456667777777777666555115689**************************999985 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.2
                     HHHHHHHHH--TT-EEEEEE CS
  Methyltransf_2 147 klLkrvkkalpagGkvivve 166
                      l k+ ++ + +gG v  ve
      CCE28869.1 185 ALFKEAYRCCAPGGWVESVE 204
                     68899999999999886666 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.5e-05     0.032      24      59 ..     105     140 ..      97     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.5e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqde 59 
                 ++ +rvL++++G+G  A+ fA ++pn+  + +d  +
  CCE28869.1 105 DKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSP 140
                 44569**********************999999765 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.8e-05     0.036      43      82 ..     103     142 ..      80     164 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-05
  Methyltransf_16  43 nelsklsvlELGsGtGlvGlavaellpeakviltDleell 82 
                      ++ +  +vl++G G+G+  + +a + p+a+vi tDl+  +
       CCE28869.1 103 EKDKIHRVLDVGTGSGIWAIEFADQFPNASVIGTDLSPCQ 142
                      5667789****************************98765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.6e-05     0.046       5      33 ..     110     138 ..     106     142 .. 0.92
   2 ?   -3.5   0.2       4.6   5.9e+03      79      89 ..     264     275 ..     260     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEi 33 
                     vl++G+G+G + ++ A ++P+ +++G ++
      CCE28869.1 110 VLDVGTGSGIWAIEFADQFPNASVIGTDL 138
                     89************************876 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.6
                     ES-.----SGGG CS
  Methyltransf_4  79 lFP.DPwfKkrh 89 
                      FP  Pw K r+
      CCE28869.1 264 KFPiGPWAKDRK 275
                     67745****998 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.3e-05     0.094      65     103 ..      98     135 ..      35     140 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.3e-05
                 HHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEE CS
        PCMT  65 alellelkkgarvLevGsGsGyltavlarlvgekgrvvs 103
                 +l  le +k  rvL+vG+GsG+ +  +a  + +   v++
  CCE28869.1  98 FLAPLEKDKIHRVLDVGTGSGIWAIEFADQFPNAS-VIG 135
                 45556778899************999988776555.555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.01        13      49      81 ..     108     139 ..      98     144 .. 0.80
   2 ?    5.2   0.0    0.0093        12     113     154 ..     164     205 ..     152     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.01
                      TEEEEES-TT-HHHHHHHHHHHHHHEEEEEES- CS
  Ubie_methyltran  49 akvlDvagGtgDlafklsdsvgekgkvvvlDin 81 
                      ++vlDv +G+g +a++++d+  +   v++ D++
       CCE28869.1 108 HRVLDVGTGSGIWAIEFADQFPN-ASVIGTDLS 139
                      589***************99754.456666665 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0093
                      S-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 113 eddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                      + + f+++ + + +  + D +  +keayr   pGG +  +e+
       CCE28869.1 164 NANHFNFIHMRYIVGGIEDWTALFKEAYRCCAPGGWVESVEY 205
                      567788899999999999******************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2812.98
//
Query:       CCE28870.1  [L=708]
Description: uncharacterized protein CPUR_02560 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5425.68
//
Query:       CCE28871.1  [L=78]
Description: uncharacterized protein CPUR_02561 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.094   11.9   0.6        0.1   11.8   0.6    1.0  1  Med3      Mediator complex subunit 3 fungal


Domain annotation for each model (and alignments):
>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   5.7e-06       0.1     117     180 ..       3      66 ..       1      76 [. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.7e-06
        Med3 117 lLenLsaynkkGkasaskasvvnst.pssaastPtttatPgantktaakslpapnatatigtptn 180
                 +Le+L +  ++G+  +s+a++++s+ p+    tP +    +   +  a ++  p+   ti  + +
  CCE28871.1   3 ILEPLVTVTRRGRPQGSTATISASQaPTDGNDTPRGR-GGNRRGRGDASTARDPSHFETIAQNHT 66 
                 79*******************988526777889*996.445555667888888888888877743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 620.51
//
Query:       CCE28872.1  [L=293]
Description: uncharacterized protein CPUR_02562 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.4    7.5   8.4       0.18   11.2   1.6    2.4  2  DUF92     Integral membrane protein DUF92


Domain annotation for each model (and alignments):
>> DUF92  Integral membrane protein DUF92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.6     1e-05      0.18      39      93 ..      76     140 ..      66     222 .. 0.76
   2 ?   -0.9   1.2     0.051   9.2e+02     148     166 ..     240     258 ..     214     280 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1e-05
       DUF92  39 lffllllvFfllgslltkvkkkvKakleeekegaRdavqVlanslvalllally...........l 93 
                 l ++ l+++fl++ + t   +++ a+   +++++R+  qV  ns+v + + l +           +
  CCE28872.1  76 LTYWGLAFYFLASAIHTLSYARHYAQ-SRRQREGRGEQQVGENSTVRATCLLDSfprglqalhslF 140
                 45556666666666666555555554.5555677**************999877666655444430 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.051
       DUF92 148 GllasllGalliallavll 166
                 G +a+ + +++i++++v+l
  CCE28872.1 240 GYVAAYVFGIAIGIVVVFL 258
                 5556666666666553222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2104.74
//
Query:       CCE28873.1  [L=622]
Description: related to glycerol transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-45  156.6  16.5    1.1e-45  156.6  16.5    1.6  2  MBOAT     MBOAT, membrane-bound O-acyltransferase family
  ------ inclusion threshold ------
      0.082   12.8   0.0       0.55   10.1   0.0    2.5  2  Cortexin  Cortexin of kidney


Domain annotation for each model (and alignments):
>> MBOAT  MBOAT, membrane-bound O-acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0      0.78     7e+03      62      98 ..      30      66 ..      16      73 .. 0.68
   2 !  156.6  16.5   1.2e-49   1.1e-45      45     343 ..     267     567 ..     255     571 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.78
       MBOAT 62 vgflelklhslslvfrklasaallsklpslleylgYv 98
                +++  ++   +++ +   a+a+++ +++  +e++ Y 
  CCE28873.1 30 TVIESRNDPDAVKKAAAQAQAQAAPSKWKTPEFFLYY 66
                4444555566677777788889999999999998885 PP

  == domain 2  score: 156.6 bits;  conditional E-value: 1.2e-49
       MBOAT  45 tedvkellklllisyfvvgflel.............klhslslvfrklasaallsklpslleylgYvffyplllvGPilsyseymsfvesplsrllyta 130
                 ++ v ++ ++l++ +++++                 +l  + l++r++ + +++   +s+ +y +Y+ ++pl+l+GPil++++y s+ +++  ++++  
  CCE28873.1 267 RWEVLFNITILRLISYNMDYYWSldnkrsaqslekkQLDPANLSERERVTISAHPNEYSFRNYVAYAIYAPLYLAGPILTFNDYISQQKFQAASIEKR- 364
                 444444444444444444333336777777777777779999*****************************************************997. PP

       MBOAT 131 krnfavalyalflgltylilieyvlskicakdftif.kmlssaqllmrsvimrilllllllfllifdflglwlvalgedilsGlgvngarldrvadrni 228
                  r +++++++l +    l+++e +l+  ++ ++++  + + +++  + s++  ++l++++l+ll +    ++l++l +++++G++         +++n+
  CCE28873.1 365 -RTLRYGIRFLLV----LLAMELILHFDYVGAISMAsPVWGDYTAAQLSLLSYFNLHIIWLKLLLP----WRLFRL-WALIDGID---------PPENM 444
                 .99********88....************9999996479***************************....******.********.........8**** PP

       MBOAT 229 ygdwenavsfsefwraWNipvhkWLlryvYkplg.skkf.....klnkslatlatFlfsAvwHglalgyliwfvlrvllllveklimrlvalsnlk... 318
                 +++++n++s++ fwraW++++++WL+ry ++plg s +f     + +  +++la+F+f+A+wH+++l++liw++l+vl+  +e     l+ + +     
  CCE28873.1 445 VRCVSNNYSTQLFWRAWHRSYNRWLVRYLFVPLGgS-SFrgwaaAARSTITYLAVFTFVALWHDIQLRLLIWGWLIVLFMVPEWTAAYLFPKKQWEsrp 542
                 **********************************63.441233256788999*****************************998777777776654111 PP

       MBOAT 319 fdrrrailsnvifwlgaflgpslal 343
                 + +r  + ++++ ++ ++++ +l+ 
  CCE28873.1 543 TEYRMLCCVGAVANVLMMMAANLVG 567
                 4466677778888888888887765 PP

>> Cortexin  Cortexin of kidney
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   6.2e-05      0.55      16      48 ..     155     190 ..     139     214 .. 0.74
   2 ?   -2.2   0.0      0.43   3.8e+03      20      42 ..     361     384 ..     352     404 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.2e-05
    Cortexin  16 vsldleqktvf..afvil.LlifLglLivrCfriLL 48 
                  s  leq+++f  af il L+i+ g+  v+ f iL 
  CCE28873.1 155 GSARLEQRASFdfAFAILfLIILHGISAVKVFAILY 190
                 57789***98622666651555669999****9995 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.43
    Cortexin  20 leqktvfaf.vilLlifLglLivr 42 
                 +e++ +  + + +Ll++L++ ++ 
  CCE28873.1 361 IEKRRTLRYgIRFLLVLLAMELIL 384
                 555555554245677777765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 4810.11
//
Query:       CCE28874.1  [L=698]
Description: uncharacterized protein CPUR_02564 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-42  144.9   0.2    9.3e-42  143.4   0.1    1.7  2  DUF4238   Protein of unknown function (DUF4238)


Domain annotation for each model (and alignments):
>> DUF4238  Protein of unknown function (DUF4238)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.1   5.2e-46   9.3e-42       1     264 [.      10     397 ..      10     403 .. 0.92
   2 ?   -2.3   0.0      0.14   2.5e+03      85     122 ..     560     608 ..     549     660 .. 0.71

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 5.2e-46
     DUF4238   1 khHyvPrfyLknFakd.....................................knklvnvydletkkieersvkricgekdmYtikned..sgedpnhi 60 
                 ++ + Prf+L+nF+++                                     +++ vn +d++++   + + + +++    ++i+++   s++++n+i
  CCE28874.1  10 YQQFMPRFLLENFSHSfriyeesegickddeaarlaslkrigslrrngkkmrrGESIVNRVDMSSE-FAPITKAPVGCDCGRFRISQRPgiSNKEQNRI 107
                 56699*********9999***************999888888888888888766666666666433.4488888888888888888887899******* PP

     DUF4238  61 EktlaklEskaakiirkilk...egkstrtltreerkqlrkflfllkyRtprfr........eeydtedkeelesymrekkkfekpldelldelkvild 148
                 E+++ +lEs+a+ i+r++l    e+ s  +ltreer+++rkf+f++kyR+p  +         +y++edke+l+ ym+e+  f +p+d++ld+l + +d
  CCE28874.1 108 ENKFIHLESEASVIFRRMLTalaENSSGLWLTREERNLVRKFMFVMKYRGPDNFkrychatmTTYEAEDKEHLAMYMKEH-GFLRPIDVWLDNLDKLID 205
                 *****************9988999**************************998889*****999999*************.****************** PP

     DUF4238 149 tkvdle....etllqeafeddaewfikhleelywalleassded.FitsDn.......PvflrndestgeeglsayseyhillPlspkllLvlrsnsle 235
                  k+d+e    ++l  +++++da w i h +++y+ l+++ss +  F+ +Dn       P  +  d + g+ +++ + + h +  +sp+l++vlrs + +
  CCE28874.1 206 VKMDAEmnwiQQLPTRMYPTDAYWAITHYQSSYMSLCTSSSYDAeFLVTDNcysiaegPRQFLWDATSGKLTNKQWASLHEFGLISPRLVIVLRSCQFP 304
                 **********99*****************************9999*************988888999999999988889****************9888 PP

     DUF4238 236 eekedake................................................................iekisreyvkkiNaillqnAk 264
                   +  ++                                                                 +++  + +v+ iN+++l+nAk
  CCE28874.1 305 CREDGEDAkykaardlwqswekdrfepishprladppifkasnnyfdlandvfrvvpelvekrsrgdpfffnFFPLESGHVDCINGVFLDNAK 397
                 7766666688*********************************************************************************98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.14
     DUF4238  85 trtltreerkqlrkflf...llkyRtprfr.......eeydt.edkeel 122
                  +++++  ++q++++ +   +lk+R p f+       ++y   ++ e l
  CCE28874.1 560 RQVIKPDRLNQMMHWAAsnsMLKTRPPGFDpwarivsSDYRGvRQLEML 608
                 5666666666666666533379999999998877766555553333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 5184.55
//
Query:       CCE28875.1  [L=727]
Description: uncharacterized protein CPUR_02565 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-56  189.8   0.0    1.1e-55  189.2   0.0    1.3  1  DUF4238   Protein of unknown function (DUF4238)
       0.01   15.7   0.1      0.038   13.8   0.0    2.0  2  ACT_5     ACT domain


Domain annotation for each model (and alignments):
>> DUF4238  Protein of unknown function (DUF4238)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.2   0.0   1.2e-59   1.1e-55       1     271 [.       9     399 ..       9     401 .. 0.93

  Alignments for each domain:
  == domain 1  score: 189.2 bits;  conditional E-value: 1.2e-59
     DUF4238   1 khHyvPrfyLknFakd..............................knklvnvydletkkie..ersvkricgekdmYtiknedsgedpnhiEktlakl 67 
                 k+ +vPrf+L+n+++                               ++++vn +d++t+  +  e++v +++g+ +mY+     s++++++iE+++++l
  CCE28875.1   9 KQYFVPRFLLENYSHPfrprgkeeaahlasqtrnasprsngkkmrrGESVVNHVDMSTEVAFvtEKPVGSVFGRFNMYQKAGI-SNKEQTRIEHKFNRL 106
                 688***********9999*************************************************************5555.8************** PP

     DUF4238  68 Eskaakiirkilk...egkstrtltreerkqlrkflfllkyRtprfr........eeydtedkeelesymrekkkfekpldelldelkvildtkvdle. 154
                 Es+a++i+r++l    +++   +ltreer+q+rkflf++kyR+p+ +        e+y++edke+l+ ymrek  f++p+d+++d+l++ +d k+d+e 
  CCE28875.1 107 ESDASAIFRRMLTaltANRRGLWLTREERNQVRKFLFVMKYRGPTSFgrychetmETYNAEDKEQLAMYMREK-GFSRPIDVWMDNLEKLIDVKMDAEm 204
                 **********9998999********************************************************.************************* PP

     DUF4238 155 ...etllqeafeddaewfikhleelywalleassded.FitsDn.......PvflrndestgeeglsayseyhillPlspkllLvlrsnsleeekedak 242
                    ++l  +++++da w i h++++y++l+++s  +  Fi  Dn       P     d + g+     +++ h + P+sp+ll+vlrs   + ++ed  
  CCE28875.1 205 dwiQQLPTRMYPTDAYWAITHCQSSYMTLCTPSARDAeFIVPDNcysiaegPHEAPMDATSGKRAIPKWTSLHEFGPISPRLLIVLRSALFPCPQEDGA 303
                 **********************************9999******6666666444434444444444444555***********************9987 PP

     DUF4238 243 e.................................................................iekisreyvkkiNaillqnAk..kfiiard 271
                                                                                   +++  +++v++iN+++l+nA   +++++++
  CCE28875.1 304 DadvratrellqshqkvmlgplsetlladlpvskasnnyskvvdgvlraipgaagapsrghsfffnFFPLENAHVDRINGVFLDNAGscNSLVFHT 399
                 79************************************************************************************7666666665 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.2e-06     0.038      22      60 ..     160     199 ..     158     200 .. 0.92
   2 ?   -2.6   0.0      0.57   5.1e+03      24      41 ..     687     704 ..     686     709 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.2e-06
       ACT_5  22 slnmsttedggtvrieltVes.ersvelLsnQleKLidVl 60 
                 ++     ed++++ + ++ ++ +r+++  +  leKLidV+
  CCE28875.1 160 TMETYNAEDKEQLAMYMREKGfSRPIDVWMDNLEKLIDVK 199
                 5677779********************************7 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.57
       ACT_5  24 nmsttedggtvrieltVe 41 
                  m tt++++++ i l+Ve
  CCE28875.1 687 AMFTTDQMTEMAIRLVVE 704
                 688999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5513.98
//
Query:       CCE28876.1  [L=304]
Description: uncharacterized protein CPUR_02566 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-06   27.5   0.1    1.5e-05   25.3   0.1    2.0  1  GST_N_3   Glutathione S-transferase, N-terminal domain
      4e-05   23.8   0.1    8.1e-05   22.8   0.1    1.6  1  GST_N_2   Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
       0.01   16.0   0.0      0.017   15.3   0.0    1.3  1  GST_C     Glutathione S-transferase, C-terminal domain
      0.018   15.2   0.0      0.033   14.4   0.0    1.4  1  GST_C_3   Glutathione S-transferase, C-terminal domain
      0.025   14.6   0.2      0.086   12.9   0.0    1.8  2  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   4.2e-09   1.5e-05       6      72 ..      25     127 ..      22     133 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 4.2e-09
                 TSHHHHHHHHHHHHHT--EEEE---.........TTTT..HHHHHHH-...TT--SSEEETTS-........................EEESHHHHHHH CS
     GST_N_3   6 aSpyarrvrlaLnekglpvevvevt.........pgeh..deellakn...plgkvPvLeddge........................altdSlaIidy 66 
                 + p+ +++r aLn k +p+++v+v+         ++ +  + ++       p+ ++P+L d++                          + dS +I+ +
  CCE28876.1  25 FAPNPWKARFALNFKAVPYRTVWVSvpdiptlrsKTLRmpPTRFY--AdgsPYATLPILHDPNAspspstqnadsdsdsgnhhpprgaLIGDSFDIATH 121
                 56999*******************988998887755553244443..3447********77654477777888888899999999998999******** PP

                 HHHHH- CS
     GST_N_3  67 Leelyp 72 
                 Le +yp
  CCE28876.1 122 LEAQYP 127
                 *****9 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   2.3e-08   8.1e-05       3      68 ..      27     123 ..      25     125 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.3e-08
                 HHHHHHHHHHHHCT--EEEEEE..H...-TTSHHHHH........HHHCTTTSSSEEE-.......................CTTEEEESHHHHHHHHH CS
     GST_N_2   3 PwahRvlialalkglediisvv..vlepkgfekseef........prlnprgtVPvLwd.......................kdgqvineSseIlryle 68 
                 P +++++ al+ k +++++ +v  ++ p   +   ++         + +p+ t+P+L+d                       + g  i +S +I+  le
  CCE28876.1  27 PNPWKARFALNFKAVPYRTVWVsvPDIPTLRS--KTLrmpptrfyADGSPYATLPILHDpnaspspstqnadsdsdsgnhhpPRGALIGDSFDIATHLE 123
                 899******************74433332222..2223344444599************6666665555555555444444334446667776666666 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   4.8e-06     0.017      17      73 ..     209     277 ..     178     284 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.8e-06
                 H............HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTT CS
       GST_C  17 e............ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlgla 73 
                 +            ek++++++ +++++++ l  l  + +   ++ G++ t+AD+ + ++l++ +r++++
  CCE28876.1 209 AgasswedfrldgEKRAAMKMSLRDALGVHLVGLLRRDESGPFVLGERATYADFIVGAWLKMIERTVPG 277
                 145556666666699999**************9999999*************************99875 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   9.1e-06     0.033      39      70 ..     242     274 ..     213     301 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.1e-06
                 HHHC.HGTSSSSTTS--HHHHHHHHHHHHHHHH CS
     GST_C_3  39 vlkk.kgggylvgdklTyADlalfqvldgleea 70 
                 +l   + g++++g++ TyAD+++ ++l+++e++
  CCE28876.1 242 LLRRdESGPFVLGERATYADFIVGAWLKMIERT 274
                 455425666*****************9999987 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.4   5.1e+03      36      52 ..     176     192 ..     174     218 .. 0.75
   2 ?   12.9   0.0   2.4e-05     0.086      24      47 ..     248     271 ..     226     288 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHH CS
     GST_C_2  36 aDialapflvrlraagp 52 
                 +D+ + ++++++ +++p
  CCE28876.1 176 VDALFSAHVQFMAYYMP 192
                 67777777777776654 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.4e-05
                 -SS.CTTCS--HHHHHHHHHHHHH CS
     GST_C_2  24 dspflfGdqptlaDialapflvrl 47 
                  +pf++G++ t+aD+ + ++l   
  CCE28876.1 248 SGPFVLGERATYADFIVGAWLKMI 271
                 456*****************9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2425.80
//
Query:       CCE28877.1  [L=125]
Description: uncharacterized protein CPUR_02567 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-10   40.6   0.7    2.2e-10   40.3   0.1    1.5  2  Chromo    Chromo (CHRromatin Organisation MOdifier) domain
     0.0081   16.3   0.0      0.016   15.3   0.0    1.5  1  Mtf2_C    Polycomb-like MTF2 factor 2


Domain annotation for each model (and alignments):
>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       1.3   1.1e+04      33      36 ..      32      35 ..      25      39 .. 0.55
   2 !   40.3   0.1   2.4e-14   2.2e-10       1      51 [.      59     109 ..      59     112 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.3
                EEEE CS
      Chromo 33 tWEp 36
                 W +
  CCE28877.1 32 EWQD 35
                3333 PP

  == domain 2  score: 40.3 bits;  conditional E-value: 2.4e-14
                 EEEEEEEEEEEETTEECEEEEEEETTSTGGGT.EEEE.GGGCSSHSHHHHHHH CS
      Chromo   1 yeVerIidhrtdkdgleleYlVKWkglpysen.tWEp.eenlekcfqelideF 51 
                 y+V++I+d+r  +++   +YlVKW+g+p     tWEp e  l+++++ l+++F
  CCE28877.1  59 YTVDEICDSRAFDGNV--KYLVKWEGYPAQRHwTWEPfEHFLGDDAKMLLKKF 109
                 78********999999..9**********6666****88899999******99 PP

>> Mtf2_C  Polycomb-like MTF2 factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-06     0.016      34      47 ..      70      83 ..      67      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-06
      Mtf2_C 34 pnGkvqYLieWeGa 47
                 +G+v+YL+ WeG+
  CCE28877.1 70 FDGNVKYLVKWEGY 83
                69***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1050.20
//
Query:       CCE28878.1  [L=372]
Description: related to ERV41-component of copii vesicles involved in transport between the ER and golgi complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-37  128.5   0.2    5.1e-37  127.9   0.2    1.2  1  COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
    1.8e-21   76.3   0.0    3.1e-21   75.5   0.0    1.4  1  ERGIC_N          Endoplasmic Reticulum-Golgi Intermediate Com
  ------ inclusion threshold ------
       0.16   11.9   0.4       0.52   10.3   0.0    1.9  2  Colicin_V        Colicin V production protein


Domain annotation for each model (and alignments):
>> COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9   0.2   8.6e-41   5.1e-37      52     216 ..     185     336 ..     168     339 .. 0.90

  Alignments for each domain:
  == domain 1  score: 127.9 bits;  conditional E-value: 8.6e-41
  COPIIcoated_ERV  52 egCrikGklevnkvaGnfhi.apgksfqeekrhvhdlssyekeklnfsHtihkLsfgeelpgekknPLdgtkkeeeekalmfqYflkvvptkye 144
                      ++Cri+G+le+nkv+G+fhi a g+ +++++ h+       ++++nfsH+i++Lsfg  +p+  +nPLd+t +++e++  +fqY+++vvpt+y+
       CCE28878.1 185 DSCRIYGSLELNKVQGDFHItARGHGYRSQGGHLD------HNSFNFSHIINELSFGAYYPSL-VNPLDHTINTAENHFQKFQYYVSVVPTQYS 271
                      89*****************9457999999999997......468*****************99.6*******99*******************9 PP

  COPIIcoated_ERV 145 kldkkkietnqysvtehersleggkdesekglPGvffsYeisPlkvivkeerksflhfltslcaiiGGvltv 216
                        ++ +i  nqy vte+ + +++       ++PGvf++Y+i P+++ v e+r  f++f  +l+ +++Gvl+ 
       CCE28878.1 272 VGSS-TIAANQYAVTEQTKVVSEY------SVPGVFVKYDIEPIQLSVVESRDGFFKFCFKLINVLSGVLVA 336
                      9765.8***************974......59*************************************975 PP

>> ERGIC_N  Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   5.1e-25   3.1e-21       2      88 ..      22     107 ..      21     110 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 5.1e-25
                 XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX-EEEEEE--S--SEEEEEEEEEE.SS-GGGEEEEEEETTEC CS
     ERGIC_N   2 rrfDafpKvpedltqktlsGgiislvcillilfLllselteylttevkeelvvdksrsekleinlditfpalpCellsldvqDesge 88 
                  +fDafpK + ++ ++t  Gg ++++++++ lfLl++el+++++++ ++++ v++   + ++inld  +  ++C  l+++vqD++g+
  CCE28878.1  22 AAFDAFPKSKPQYVTRTEGGGKWTVAMAVVSLFLLWAELASWWRGSESHTFAVEQRIAHSMQINLDAVV-LMKCGDLHVNVQDAAGD 107
                 57***********99******************************************************.***************98 PP

>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.38   2.3e+03     116     135 ..      49      69 ..      41      76 .. 0.50
   2 ?   10.3   0.0   8.7e-05      0.52      18      53 ..     316     351 ..     313     364 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.38
   Colicin_V 116 lllalvplpkv.qewlqnSvl 135
                 ++++l+ l ++ ++w++ S +
  CCE28878.1  49 AVVSLFLLWAElASWWRGSES 69 
                 333333333333335555555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 8.7e-05
   Colicin_V  18 rrGfvrevlsllgwvvafvvasllypslaellaeli 53 
                 r Gf++  + l+ ++ +++va +++ +l+e+++e+ 
  CCE28878.1 316 RDGFFKFCFKLINVLSGVLVAGHWGFTLSEWFREVL 351
                 68******************************9953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2990.19
//
Query:       CCE28879.1  [L=555]
Description: related to 4-coumarate--CoA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-89  300.3   0.0    2.1e-89  300.0   0.0    1.0  1  AMP-binding    AMP-binding enzyme
    3.9e-11   43.8   0.0      8e-11   42.8   0.0    1.6  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.0   0.0   2.4e-93   2.1e-89      26     422 ..      48     453 ..      29     454 .. 0.89

  Alignments for each domain:
  == domain 1  score: 300.0 bits;  conditional E-value: 2.4e-93
                  HHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHHHHHSCC-EECE CS
  AMP-binding  26 reldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdselleklleaaakleavkl 122
                  +el++ v+rlA gLr + +v++gd+V+++ +ns  + v++l++   G+v    np++t+ ela++l+ s+a++++  +dse l++ l+a +++  +++
   CCE28879.1  48 AELESSVKRLAGGLReKCNVQNGDVVLVYTENSTWYPVIILGAICSGGVFTGANPGYTSTELAHQLKISGARCIF--TDSERLNSTLQAVKAVGLPSS 143
                  799************999*********************************************************..999995555566666778888 PP

                  EEEESCCS-HCCHCCCHCCCCSCTTS........-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH.HHHC.SCCTT......T-E CS
  AMP-binding 123 vivldadellkeeelkeeeeseekae........kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk.letr.fklke......ddv 204
                  +ivl +++ + +++ +e+  ++  +         + ++e+e+ +d +a++ ++SGTTG PK++m++hrnlvan+ ++  l++  +k ++      ++ 
   CCE28879.1 144 CIVLVENGGQPAKDGDENGFCSMHDLlacapyswEVVKEREVLADKIAVLNFSSGTTGSPKACMITHRNLVANAEQQLhLDDVaQKRSPdakytaHNI 241
                  888877776666666666666655426788899966677889*******************************9996575444433334667776999 PP

                  EEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHH CS
  AMP-binding 205 vlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggeplspellrf 302
                   +++lp++h+ gli+ +++ l + +t v+++k++    +lll++i++++vt+++++P v+ +l++s+ l+    ++dlss++++++g++pl pel ++
   CCE28879.1 242 HCAFLPFYHASGLIVYCIMNLRRPCTTVVMRKFSL---RLLLGTIHRFRVTYLFLAPPVVVMLAKSDLLA----RHDLSSVKFLFCGAAPLKPELSKK 332
                  9********************************98...4589**********************986565....77********************** PP

                  HHHHHTC...EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEETCCEEE CS
  AMP-binding 303 fralfge...evlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafdsegrwlr 397
                  ++ +f +   +  +g+G+TE+t++vt + ++e +++   vG  +p++e+ki+  + g+pv+ +eeGe ++rgp+++kgY+ +p+at++a++ e++w++
   CCE28879.1 333 LETIFSGgkaRSRQGWGMTEATMAVTLFAPDEFDPSYRGVGYLVPNMEMKIIGHH-GQPVGCNEEGEAVIRGPNIFKGYYENPSATRQAWT-EDGWMK 428
                  *****99**999*************88555777777788**************98.**********************************9.867*** PP

                  EEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 398 TGDlgrldedGyleivgRkkdlikl 422
                  TGD++ +de G l +v Rkk+lik+
   CCE28879.1 429 TGDVVIIDESGLLTVVNRKKELIKV 453
                  ************************8 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   8.9e-15     8e-11       1      76 []     462     538 ..     462     538 .. 0.94

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 8.9e-15
                    HHHHHHHSSTTEEEEEEE-----TTS.---EEEEEE------HHHHHHHHHHHHT-TTTS-S.EEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkG.ealvafVvlkdgsealeeeLkahvrkelgpyavpk.kvvfvdelpktrsGK 76 
                    e+E  l++h++V+++aV+ v+ +++G e + a +v++dg+  +++ ++ +++++l +y++    +vf++++pk +sGK
     CCE28879.1 462 ELEGHLLEHDGVKDCAVIRVTRDRDGqEHPQAHIVPRDGT-VTAASIMNFMNQRLSAYKRLTgGIVFTEAIPKSASGK 538
                    78999*********************777*******9995.357***************9998**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 4469.94
//
Query:       CCE28880.1  [L=344]
Description: uncharacterized protein CPUR_02570 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-14   52.7   0.0    6.4e-14   52.0   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    1.1e-12   48.5   0.0    3.4e-12   46.9   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    1.8e-09   38.1   0.0    4.1e-09   37.0   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    1.4e-07   31.1   0.0    1.9e-07   30.6   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
    2.1e-06   28.4   0.0    4.4e-06   27.3   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
     0.0029   17.3   0.0      0.005   16.5   0.0    1.3  1  UPF0020          Putative RNA methylase family UPF0020
     0.0039   16.7   0.0     0.0068   15.9   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
     0.0051   16.7   0.0      0.013   15.3   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.028   14.0   0.0      0.049   13.2   0.0    1.4  1  MTS              Methyltransferase small domain
      0.067   13.2   0.0       0.14   12.1   0.0    1.5  1  Dimerisation2    Dimerisation domain
      0.071   12.5   0.0       0.12   11.7   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.073   12.6   0.0       0.12   11.9   0.0    1.4  1  DOT1             Histone methylation protein DOT1
       0.17   11.2   0.0       0.64    9.3   0.0    1.8  2  CMAS             Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   4.7e-17   6.4e-14       6      96 ..     159     249 ..     156     299 .. 0.82

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 4.7e-17
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklled..ekfDlilsnevlnaladpdkilee 96 
                      ++lDlG+G+Ge + ++    +p+++ +G+Di   aie+Ar++aq+ g+  +++F +gd+ +le  ++d  +++D+i+s+   +++   d+++ +
       CCE28880.1 159 SLLDLGSGSGERLMQIL-HRFPNSTAIGVDIAGPAIEVARAEAQRRGYGdRITFAVGDARKLE--YQDefAQVDIITSFLMGHDFWPRDNCIAS 249
                      68***************.5589**************************99*************..99999********9666666555555552 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   2.5e-15   3.4e-12       2      81 ..     161     244 ..     160     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 2.5e-15
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTT..TEEEEEEESTGGG.SSHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedg..sfDlvvssgalhh.lsded 81 
                      LdlG G+G+ ++++++r+++++ +gvDi+  ++e ar++a+++g+  +++f +gda++l+++d+  ++D+++s+  + h ++++d
       CCE28880.1 161 LDLGSGSGERLMQILHRFPNSTAIGVDIAGPAIEVARAEAQRRGYgdRITFAVGDARKLEYQDEfaQVDIITSF-LMGHdFWPRD 244
                      9*****************99**********************99999*************9888779******5.5555577665 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0     3e-12   4.1e-09       1      82 [.     161     248 ..     161     256 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 3e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT..-EEEEEEES-CCC-CCHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl..kvefvvadaeklpfedn..sfDlvvssevlhhvedpekalk 82 
                      Ld+G+G+G  + ++ +r+  ++ +gvD++  ++++a+++a+++g   +++f v+da+kl ++d+  ++D+++s+ + h +  ++ +++
       CCE28880.1 161 LDLGSGSGERLMQILHRFpnSTAIGVDIAGPAIEVARAEAQRRGYgdRITFAVGDARKLEYQDEfaQVDIITSFLMGHDFWPRDNCIA 248
                      8*****9998888887778********************************************766********99999866666655 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.4e-10   1.9e-07      49     168 ..     141     269 ..     120     292 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.4e-10
                     HHHHHHHHSS-..GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HH.HHHHHHHHS.-----TTEEEEES-TTT....S-----SEEEEES CS
  Methyltransf_2  49 lvakkvleafd..leglkslvDvGGGtGalakaivsayPtikvivfDlpe.VveaAkehl.sageeervefvgGdffk....dslPeaDaillkr 135
                      + k  l a++    +++sl+D+G G+G  + +i + +P+ ++i  D++   +e A+      g  +r++f  Gd +k    d+  + D+i    
      CCE28880.1 141 FIDKVFLDAVEssGCNFTSLLDLGSGSGERLMQILHRFPNSTAIGVDIAGpAIEVARAEAqRRGYGDRITFAVGDARKleyqDEFAQVDIITSFL 235
                     555666777763345799******************************8636777777664678999********97533338889999999999 PP

                     SGGG.S-HHHHHHHHHHHHHH--TT-EEEEEE-- CS
  Methyltransf_2 136 vlhD.wsdekcvklLkrvkkalpagGkvivveav 168
                     + hD w  ++c   L+ ++ka p+  k  + +++
      CCE28880.1 236 MGHDfWPRDNCIASLQMLRKAFPKVQKFFLCDTM 269
                     99**8899***************99999888877 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   3.2e-09   4.4e-06       1      80 [.     161     244 ..     161     257 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 3.2e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakren.nnnnnvelealdlldldggssfDlvvasnvlhhl...k 80 
                      L++G+G+G+ l+ +l ++p+++ +gvDi   aie a+++ ++r+  ++ ++   +a+ l+ +d+ +++D+++++   h +   +
       CCE28880.1 161 LDLGSGSGERLMQILHRFPNSTAIGVDIAGPAIEVARAEAQRRGYgDRITFAVGDARKLEYQDEFAQVDIITSFLMGHDFwprD 244
                      8********************************77777666666504455555556666666666******9987766665544 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.6e-06     0.005      77     126 ..     181     232 ..     165     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.6e-06
                 --EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--..STTS---EEE CS
     UPF0020  77 lklygsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdviv 126
                    +g+D+   +++ ar  a++ g gd+i+f + da+kL+   + ++vd+i 
  CCE28880.1 181 STAIGVDIAGPAIEVARAEAQRRGYGDRITFAVGDARKLEyqDEFAQVDIIT 232
                 4579************************************755555888875 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.9e-06    0.0068       5      50 ..     160     205 ..     157     230 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.9e-06
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTT CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealel 50 
                     +l++G+G+Ge l+++ +++P+ + +G++i  + ++ + ++++++++
      CCE28880.1 160 LLDLGSGSGERLMQILHRFPNSTAIGVDIAGPAIEVARAEAQRRGY 205
                     79********************************999999988865 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.6e-06     0.013      24      62 ..     151     215 ..     115     240 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.6e-06
  Methyltransf_23  24 g.......rvLdiGcGtG.illevlrengf.svtgvDlspeaveiae.................k 62 
                              ++Ld+G G+G +l+++l +++  + +gvD+   a+e a+                  
       CCE28880.1 151 EssgcnftSLLDLGSGSGeRLMQILHRFPNsTAIGVDIAGPAIEVARaeaqrrgygdritfavgD 215
                      1445666699********889**99999765899********99998777766666655554441 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.5e-05     0.049      23      88 ..     146     215 ..     141     233 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.5e-05
                 HHHHCHCC..TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-S CS
         MTS  23 Lletlpke..lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasd 88 
                 +l++++++     ++lDlG+G G   ++++++ p+ +   vd+   A+e+a++ +++ +    +++   d
  CCE28880.1 146 FLDAVESSgcNFTSLLDLGSGSGERLMQILHRFPNSTAIGVDIAGPAIEVARAEAQRRGYGdrITFAVGD 215
                 666666666656679***************************************9998876555555555 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0    0.0001      0.14       2      66 ..      12      76 ..      11      91 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
  Dimerisation2  2 llellnGFlaSkaLftAceLgvFdlLkeeeplsaeevaeelgasvkGterLldacvaLgLLerek 66
                   +++++n++ a+  + +A e g+ + +++ + ++ ++ a+e +++ ++t+ L+ a+++  +L+re 
     CCE28880.1 12 VTQIFNSYIAACSIGAAWEVGLLEKVRTLKSVDINDFAAEQNLDQRSTHGLVSALATASILQREG 76
                   7899************************99********************************873 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.7e-05      0.12     152     222 ..     147     217 ..     144     236 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.7e-05
        PrmA 152 lealeklvkegeevlDvGtGSG.iLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseell 222
                 l a+e+   + +++lD+G GSG  L    +++  +++++vDi   A++va++ a++ +  ++++ a  +++ 
  CCE28880.1 147 LDAVESSGCNFTSLLDLGSGSGeRLMQILHRFPNSTAIGVDIAGPAIEVARAEAQRRGYGDRITFA-VGDAR 217
                 45555555666799********535555789************************99999988553.33333 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.7e-05      0.12      46      86 ..     160     200 ..     125     235 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.7e-05
                 EEEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHHHHHH CS
        DOT1  46 FvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqk 86 
                  +DLGSG G+  +q+   +   +++Gv+i+  a e+a++++
  CCE28880.1 160 LLDLGSGSGERLMQILHRFPNSTAIGVDIAGPAIEVARAEA 200
                 58****************************99999876544 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.56   7.7e+02     243     260 ..       7      24 ..       2      33 .. 0.84
   2 ?    9.3   0.0   0.00047      0.64      65     136 ..     159     236 ..     133     280 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.56
                 HSHHHHHHHHHHHHHHHH CS
        CMAS 243 lvseevarmyelYLagca 260
                   ++ev+++++ Y+a+c+
  CCE28880.1   7 SPQQEVTQIFNSYIAACS 24 
                 56789************7 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00047
                 EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---.....--SEEEEES- CS
        CMAS  65 tlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde.....kvdrvvsvga 136
                  lLd+G G G+ +++  +r+ +   +g+ +     ++a+++ ++++  ++ +  + d + l+      +vd + s+ +
  CCE28880.1 159 SLLDLGSGSGERLMQILHRFpNSTAIGVDIAGPAIEVARAEAQRRGYGDRITFAVGDARKLEYqdefaQVDIITSFLM 236
                 69*****************966789************************99877766665543333337787777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2585.89
//
Query:       CCE28881.1  [L=808]
Description: uncharacterized protein CPUR_02571 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-14   51.9   0.0    1.4e-13   51.1   0.0    1.3  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
      1e-08   35.2   0.0    2.3e-08   34.0   0.0    1.5  1  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 
    0.00018   21.8   0.0     0.0016   18.7   0.0    2.4  2  Glyoxalase_4     Glyoxalase/Bleomycin resistance protein/Diox
     0.0042   17.3   0.1      0.024   14.9   0.0    2.3  3  Glyoxalase       Glyoxalase/Bleomycin resistance protein/Diox


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   3.1e-17   1.4e-13      11     174 ..     208     406 ..     199     418 .. 0.78

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 3.1e-17
                    HHHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT.-EEEEEEESSEEEEETTEE...-HHHHHHHHHCSSSSTTHSHH....... CS
  ELFV_dehydrog  11 glGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelg.akvvavsDssGviydpeGl...dieellelkeerksvkeykks....... 95 
                    g+ ++++++e+l + + + + ++r++i+G+G vg   a  +++lg  +vva+s + G ++d++G+    i+e  +l+ +++sv++++ +       
     CCE28881.1 208 GYVMAITLKELLIHSDAKLIGQARLVIQGFGCVGATFAHAVKQLGlGRVVAISSQYGFLIDDKGIncaAIDEARRLAIKNNSVQDFDPRsleaglg 303
                    7888888999999999999999**********************8679*****************77778888999999999*****888989988 PP

                    .........STSTSEEESHHSHH....HHSS-SEEEE-SSTTSB-HHHHTHTH.......HTT-SEEE-SSS.S-B-HHHHH....HHHHTT-EEE CS
  ELFV_dehydrog  96 .........sekkaeyieneeel....lelkvdilvPcAtqneideenakali.......kngvklvvEgAN.lpttqeAke....ileeagvlvv 166
                              ++ka ++++ ++l     + ++d++vPcA   +++ + +++l        ++++++++ gAN +++++ ++e     l +a + ++
     CCE28881.1 304 prdlqsdryTARKAGTTDE-QHLhaflTAARADVFVPCAQRYVLTPDIVHTLAnetfaqtASNARFILAGANnVFSSHWSNEdmlsELDSASIRML 398
                    8877655542222222222.2444442334********************8888888777779********8344444333311115556668888 PP

                    -HHHHTTH CS
  ELFV_dehydrog 167 pdkaaNaG 174
                    p+ ++N+G
     CCE28881.1 399 PEWVSNSG 406
                    88888888 PP

>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   5.1e-12   2.3e-08      21     111 ..      58     149 ..      46     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 5.1e-12
                      EEEEEEEEE-TTSSEEEEEEEETT--HHHHHHHHHHHHHHHHHTTSS.-EEEEEEEES-GGGS-.HHHHHHHHHHHHHHHG.GG-BTTTEEEE CS
  ELFV_dehydrog_N  21 ikgyraqhssalgPakGGiRfhpsvnldevkaLaalmtyKnalvdlp.fGGakggvkidpkkls.eeeleritrrfvrelakkfiGpgiDvpA 111
                       +g++++ s + ++  GG+ +h++++l+ev+  a+ m  K a+ + p + Gakggv++ p++    + ler++r+ +  l+ ++ G g D+ +
       CCE28881.1  58 AEGWIVIDSPVPTASGGGLFLHENATLEEVRDVARSMNAKLAVSSQPqIAGAKGGVRFPPRDPRaASVLERFIRDNAGVLS-QYWGTGGDINT 149
                      68999999999999*****************************987647************765156789***********.****9888865 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.28   1.2e+03      70      87 ..     481     498 ..     461     511 .. 0.72
   2 !   18.7   0.0   3.7e-07    0.0016       2      95 ..     618     724 ..     617     734 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.28
                   EEEEEEES-HHHHHHHHC CS
  Glyoxalase_4  70 hhlaywvddldaavarle 87 
                    hl ++++++++av++++
    CCE28881.1 481 SHLTLHTRNVKRAVETFT 498
                   566666666666665543 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 3.7e-07
                   EEEEE-S-HHHHHHHHHH.TT-EESS--E.EETT.........TTEEEEEEEETTEEEEEEEESSTT-THHH.....TS-EEEEEEEEES-HHHHHH CS
  Glyoxalase_4   2 QigivVeDleaavarfsallGvgpwqryrdepqe.........vdlafallgsgsvqieLieplegpeflae.....hgeglhhlaywvddldaava 84 
                   + + + +D  +   + +++lG++  ++++++  +         +++  +   ++ v i L e l+ ++ + +     +g  +hh+a+ vdd+da+  
    CCE28881.1 618 HFASIMPDTSKIKIFHERMLGFTHLRTFTVNAGSapdgqddglMHVMGLPCDDQRVNI-LTEGLNSQSVFSKllarnCGSYVHHVALKVDDVDAVFS 713
                   5666666777777777777777766666654432111222222444333333333443.5677777755555555589999**************** PP

                   HHCTTTEEEEE CS
  Glyoxalase_4  85 rleeqGfevvq 95 
                   +++++G+  + 
    CCE28881.1 714 EVRKRGWGTTA 724
                   *******8665 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.3     1e+04       2      22 ..     480     500 ..     479     507 .. 0.84
   2 ?   -2.5   0.0       1.2   5.6e+03      82     123 ..     542     581 ..     524     584 .. 0.73
   3 !   14.9   0.0   5.2e-06     0.024       2     103 ..     616     724 ..     615     750 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.3
                 EEEEEEEESHHHHHHHHHHHH CS
  Glyoxalase   2 idhvallvgdleksldFYtkv 22 
                 + h++l +++++++++ +t+v
  CCE28881.1 480 LSHLTLHTRNVKRAVETFTQV 500
                 789999999999999998887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
                 EEHCHHHHHHHHHHHTTGEEEEEEECHHCTEEEEEEEEETTS CS
  Glyoxalase  82 ldvedvgkaldrlkeagvkvvaepgrhyfgalysfyfrDpdG 123
                 ++v ++++a + lk+++v +++     + g +++f  r++ G
  CCE28881.1 542 FSVYNLARAREVLKAEKVTFTERT--LPDGTSEIFLDREEAG 581
                 667788999999999998888775..4444444444666666 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 5.2e-06
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEE.......EEST.EEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC....TSEEEEEEEEEHCHHH CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdn.......teet.eglriaffhaggghielvlneapsgaakhvkkiee....tvhhvafialdvedvg 88 
                 +dh+a + +d +k   F ++ LGf+ ++ +            + + ++ + + +++++++++ +   s +  +           +  v+++al+v+dv+
  CCE28881.1 616 VDHFASIMPDTSKIKIFHERMLGFTHLRTFTVnagsapdG-QDdGLMHVMGLPCDDQRVNILTEGLNSQSVFSK----LlarnCGSYVHHVALKVDDVD 709
                 69**********************9888888779988743.334888888899999999988776666654443....1334488999999******** PP

                 HHHHHHHHTTGEEEE CS
  Glyoxalase  89 kaldrlkeagvkvva 103
                 + + +++++g   +a
  CCE28881.1 710 AVFSEVRKRGWGTTA 724
                 *******99976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 5952.52
//
Query:       CCE28882.1  [L=368]
Description: related to transesterase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-41  142.0   0.0    3.3e-41  141.6   0.0    1.1  1  Beta-lactamase   Beta-lactamase
     0.0076   15.9   0.0       0.05   13.2   0.0    2.0  2  Beta-lactamase2  Beta-lactamase enzyme family


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   0.0   3.7e-45   3.3e-41      40     319 ..      10     343 ..       2     353 .. 0.81

  Alignments for each domain:
  == domain 1  score: 141.6 bits;  conditional E-value: 3.7e-45
                     TTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTST................TCTTGGGTTEBHHHHHTTHSSCSSSSTSTTCTSH CS
  Beta-lactamase  40 ggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylP................efagpgkgkiTlrdLltHtsGlpdlfasdlleea 118
                     ++ p + +t+f +aS+tK+ t++a+lqlv+++++ Ld+ Vs  lP                +  +++ ++iTlr+LltH+sG  ++f++ +l++ 
      CCE28882.1  10 SQCPIDDQTIFTLASCTKLPTTVAALQLVDKKLIALDEDVSPLLPvlgrqqilvgwqadgsPILRKRRNPITLRQLLTHSSGCGYDFYHQDLKRF 104
                     5569999**************************************************************************************** PP

                     HHTH.......HHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHHTSHHHHHHHHHTTTTTTSTTEESSTTGGGGGGBEEEEEEETCEEEC CS
  Beta-lactamase 119 aada.......aellralatlppkyapGtkwgYsntgygllgellekvtgrsleqllreeilrpLgmkdtelgppesgdprdaagytgngpeara 206
                      +++       +  +     +p++++pG+ w+Y +  + ++g+l+e ++g+sle+++++++++pLg  + +++p+++g  r  a+ +++++++  
      CCE28882.1 105 RRYQgttpatqKAKVTEWFDQPLVFEPGQGWEYGAGLD-WAGKLIEQISGMSLEDYMSRHVWTPLGASSYTFWPDSPGYNRELATLAKRDRTTG- 197
                     *999****9998888888899****************9.***************************************9998777743333322. PP

                     SCETTHHHHC............TTTBEEEEHHHHHHHH.HHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEEC.................ECS CS
  Beta-lactamase 207 ppanlpaeae............gagglistardlarfl.glalegglllsaetlaqltaklssgttrpagiragl.................glG 271
                         l+   e            g++g + +a+d+a ++  l+ +++++l++ + + + +++ s++ + a++   +                 glG
      CCE28882.1 198 ---KLDVSLEgldlnrnvkecfGGHGAYCSAADYAELMfSLLVNDERVLRPSSVELMFENQLSPESKEALQEVMRtrdlaggdyyagevyswGLG 289
                     ...22222223556799**********************55555555555555555533333333333333333333333323223345555666 PP

                     SEEEEECCH........TEEEEEEESTEEEEEEEECGGTEEEEEEESBCSSHHHHH CS
  Beta-lactamase 272 wvladktga........pgtfghtGggygtyvfvdpeanlvvavltnrdppnedaa 319
                       l ++t +        p+t+ +     + y+f+d+ ++++  ++t+  p+ +da+
      CCE28882.1 290 GLLVEETHDseapydrgPKTLAWCS-ALNHYWFIDRSKGVCGLLMTHVVPS-PDAK 343
                     6666666669***************.*********************9997.4443 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   5.6e-06      0.05       9      72 ..      14      86 ..      11      91 .. 0.73
   2 ?   -0.2   0.0     0.069   6.2e+02     127     163 ..     222     259 ..     202     278 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.6e-06
                     ESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHH..........HTSSSTSGGGSTTSEEEHHHHH CS
  Beta-lactamase2  9 vnadeefpaaStiKvpillalleavlegklslderltltaed..........ivggsgilqklpgktlslrdll 72
                     +++++ f +aS+ K+p  +a+l+ v+++ + lde +                 ++gs+il+k+++  ++lr+ll
       CCE28882.1 14 IDDQTIFTLASCTKLPTTVAALQLVDKKLIALDEDVSPLLPVlgrqqilvgwQADGSPILRKRRN-PITLRQLL 86
                     578899***************************99864322235555666656677777765544.35566665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.069
                      EE-HHHHHHHHHHHHHT..TSSHHHHHHHHHHT-STTTT CS
  Beta-lactamase2 127 tttardlarllealarg..ellspeelleilsnqqfrdr 163
                      +++a+d+a+l+ +l  +  ++l p+  +e++ ++q +  
       CCE28882.1 222 YCSAADYAELMFSLLVNdeRVLRPS-SVELMFENQLSPE 259
                      7899999999877655423688885.8888885554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2644.61
//
Query:       CCE28883.1  [L=109]
Description: uncharacterized protein CPUR_02574 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
          2    8.5  18.1        2.6    8.2  18.0    1.3  1  Keratin_2_head  Keratin type II head
          2    8.2   8.6        2.7    7.8   8.6    1.2  1  PRR18           Proline-rich protein family 18
        2.6    8.0  10.0        1.8    8.5   1.4    2.2  2  Serglycin       Serglycin


Domain annotation for each model (and alignments):
>> Keratin_2_head  Keratin type II head
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  18.0   0.00043       2.6      57     109 ..       7      58 ..       4      93 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00043
  Keratin_2_head  57 sisisvagggsragsgfgfgggggggfglGfggGvglgfgagggvGggfGggg 109
                     + s+s+++++  ++   +   g+g g g+G g+G+g+g  ag g+G g G+g+
      CCE28883.1   7 KSSVSTIRQAMGST-PERHVVGAGAGAGAGAGAGAGAGASAGAGAGAGAGAGS 58 
                     55666666655444.22344455555555666666666666666666666665 PP

>> PRR18  Proline-rich protein family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   8.6   0.00045       2.7      52     101 ..       5      53 ..       2      70 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00045
       PRR18  52 pqaspgrartpatcttprlaasgespaagtsagtGataaGtsaGagarpd 101
                 p+ s   +   a  +tp +   g    ag+ ag+Ga +aG+saGaga+  
  CCE28883.1   5 PRKSSVSTIRQAMGSTPERHVVGAGAGAGAGAGAGA-GAGASAGAGAGAG 53 
                 666667777788889998888887777777777777.7777777776643 PP

>> Serglycin  Serglycin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   3.8     0.012        70      93     108 ..      27      42 ..       3      47 .. 0.61
   2 ?    8.5   1.4    0.0003       1.8      94     115 ..      46      67 ..      42      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.012
   Serglycin  93 gsgsGsGsGsGsgsgs 108
                 g+g+G+G+G+G+g+g 
  CCE28883.1  27 GAGAGAGAGAGAGAGA 42 
                 4555555555554443 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0003
   Serglycin  94 sgsGsGsGsGsgsgsgflteie 115
                 +g+G+G+G+G+gs+ +f ++ +
  CCE28883.1  46 AGAGAGAGAGAGSDADFDADSD 67 
                 6889999999999999988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 859.35
//
Query:       CCE28884.1  [L=265]
Description: uncharacterized protein CPUR_02573 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.12   12.4  13.3       0.19   11.7  13.3    1.3  1  Mucin           Mucin-like glycoprotein
       0.55   10.3   8.5       0.81    9.7   8.5    1.1  1  Pox_A12         Poxvirus A12 protein
          2    6.5   8.8        2.5    6.1   8.8    1.1  1  FSA_C           Fragile site-associated protein C-terminus
        2.8    8.4  11.7        4.8    7.6  11.7    1.3  1  MGC-24          Multi-glycosylated core protein 24 (MGC-24), 


Domain annotation for each model (and alignments):
>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  13.3   4.2e-05      0.19      57     108 ..      45      95 ..      21     112 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
       Mucin  57 tttttttasttittkttkattttttttttttateaPsdavttaeaPtttttr 108
                 t+t t+ +st+++t t+++t+t+t+t+t+t++ + P      ++ P    +r
  CCE28884.1  45 TSTSTS-TSTSTSTSTSTSTSTSTSTSTSTSTNNMPLLRNKPSRHPPHPPAR 95 
                 233333.344445667777777777888888888887655555555544444 PP

>> Pox_A12  Poxvirus A12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   8.5   0.00018      0.81      22      89 ..       7      74 ..       3      85 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00018
     Pox_A12 22 ltpqlktilahisGeqavkrstnsiednteddvkaGatcdtkkkskklislskkkssssskstrkssk 89
                lt q + il +i+   ++++ tn i++ +   +k     +t   ++  +s s + s+s+s+st++s++
  CCE28884.1  7 LTRQRRFILMRITLSGSSNSVTNGINNSIRISIKISIRTSTSTSTSTSTSTSTSTSTSTSTSTSTSTS 74
                89999*******99999899999999999888888776666554444444444444444444444433 PP

>> FSA_C  Fragile site-associated protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   8.8   0.00057       2.5     548     605 ..      21      77 ..      11      99 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00057
       FSA_C 548 akssleslqgsqdsiaiattasavelndatsstiasaatasslsstkstvtivvstnd 605
                 + ss +  +g ++si i+   s  +  ++++st +s++t++s+ st +++++ +stn+
  CCE28884.1  21 SGSSNSVTNGINNSIRISIKISIRTSTSTSTSTSTSTSTSTST-STSTSTSTSTSTNN 77 
                 4445555566666666655555544444444444444444333.34444444455554 PP

>> MGC-24  Multi-glycosylated core protein 24 (MGC-24), sialomucin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  11.7    0.0011       4.8      55     101 ..      42      88 ..      17      95 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
      MGC-24  55 askstpkptnstaktttkpsstttstsvatsgttnttvtptsqpark 101
                 + ++++++++st+++t++++st+tsts++ts++tn+ + + ++p+r+
  CCE28884.1  42 SIRTSTSTSTSTSTSTSTSTSTSTSTSTSTSTSTNNMPLLRNKPSRH 88 
                 22222444445666666666666666666777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1445  (0.0805957); expected 358.6 (0.02)
Passed bias filter:                      711  (0.0396564); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 1891.43
//
Query:       CCE28885.1  [L=304]
Description: uncharacterized protein CPUR_02575 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2230.38
//
Query:       CCE28886.1  [L=408]
Description: uncharacterized protein CPUR_02576 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.025   14.5   6.0       0.11   12.4   0.6    2.8  3  Apolipoprotein  Apolipoprotein A1/A4/E domain
       0.97    9.2   4.1         71    3.3   0.3    4.8  6  DUF4535         Domain of unknown function (DUF4535)
        1.7    8.6  12.3        4.8    7.2   0.8    4.5  4  Phasin          Poly(hydroxyalcanoate) granule associated pro
        2.9    8.7   0.0        2.9    8.7   0.0    4.1  5  FIVAR           FIVAR domain
        6.2    7.5   8.6        6.5    7.5   0.0    3.7  5  DUF4404         Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       0.9   3.2e+03      41      57 ..      84     100 ..      71     112 .. 0.47
   2 ?    6.1   0.3    0.0026       9.3      90     166 ..     177     259 ..     126     279 .. 0.56
   3 ?   12.4   0.6   2.9e-05      0.11      18     180 ..     182     406 ..     177     408 .] 0.61

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.9
                     HHHHHHHHHHHHCCCCH CS
  Apolipoprotein  41 rlraeleevrarlepyr 57 
                     + ++  e+++++l++ +
      CCE28886.1  84 EAGKTYEAAVKKLQSST 100
                     22333444444444443 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0026
                     HHCCHHCHCCHCHH...........HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TT CS
  Apolipoprotein  90 aeelqeqlavyaee...........lrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrekleeq 166
                     + ++ +++a+ ++e           +++ + r+ve+l+++ + y+ +  + +++   ++k+ + ++  +       + + +r+ +ee+
      CCE28886.1 177 LADVTKKIASLGKEaisdvadnhpgAKDTINRGVEKLQDMGENYSPDSMKLIDQTYSQVKDIIMAEGGSAA-----KFDKVRKLVEEK 259
                     23333333333333444444445558888888888888888888888888888888887776666533333.....333333333333 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 2.9e-05
                     HCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHH..HHHHCHHCCHHCHCCHCHH....... CS
  Apolipoprotein  18 eqlaplaqelrdrlskeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelre..rlaadaeelqeqlavyaee....... 103
                     +++a+l +e++  ++++  ++++ +++ +e + +  e+y  +  + + q+  +++  + +     ++  ++++ +ee  +q++  ++e       
      CCE28886.1 182 KKIASLGKEAISDVADNHPGAKDTINRGVEKLQDMGENYSPDSMKLIDQTYSQVKDIIMAEGGSAAKfdKVRKLVEEKAQQISGLSDEawkkgie 276
                     55555555556666666666666666666666666666666666666666666666555555555444455555555555555555555555666 PP

                     ..............................HHHHHHHH.HHHHHHHHCHHHHHHH......................HHHHHHHHHHHH-----. CS
  Apolipoprotein 104 ..............................lrerlerh.vealkarlapyveelr......................qklaerleelkeslapha 145
                                                   l ++l+++ +++l++ ++  +e+++                       ++ ++l+ +++ ++ h+
      CCE28886.1 277 aakpfldknpkikdlieknadvfkktnlneLFQKLRSGdMDDLQKYVQDTIEKGKdmasdagdnmglgkylnmvpqgGDVLQKLQHIGQIADKHK 371
                     666666666665555555555555555555555555555555555555555555555566666666666665555554899************** PP

                     .-----SSSHHHHHHHTS-TTSHHHHHS--XXXXX CS
  Apolipoprotein 146 eeveerlssrveelrekleeqaeelrerleanlee 180
                     +e e  + ++vee+++ le+q e+ ++ +e++ +e
      CCE28886.1 372 DEGEKLFKDTVEEIKKILEKQSEKGKNIVEKATKE 406
                     ********************999888877777666 PP

>> DUF4535  Domain of unknown function (DUF4535)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.033   1.2e+02      21      42 ..     195     220 ..     170     221 .. 0.71
   2 ?   -2.5   0.0       1.3   4.6e+03      24      39 ..     224     239 ..     222     241 .. 0.80
   3 ?   -0.7   0.1      0.35   1.2e+03      26      39 ..     254     267 ..     251     288 .. 0.52
   4 ?   -2.7   0.0       1.4     5e+03      31      41 ..     284     294 ..     276     296 .. 0.73
   5 ?   -3.9   0.0       3.5   1.3e+04      24      37 ..     319     332 ..     318     334 .. 0.73
   6 ?    3.3   0.3      0.02        71      26      41 ..     376     391 ..     374     395 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.033
     DUF4535  21 V....Pnvkklaakglekakeleeay 42 
                 V    P  k+++++g+ek++++ e+y
  CCE28886.1 195 VadnhPGAKDTINRGVEKLQDMGENY 220
                 155558889999*******9999988 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
     DUF4535  24 vkklaakglekakele 39 
                   kl++++ +++k+++
  CCE28886.1 224 SMKLIDQTYSQVKDII 239
                 5699999999999986 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.35
     DUF4535  26 klaakglekakele 39 
                 kl++++ +++  l 
  CCE28886.1 254 KLVEEKAQQISGLS 267
                 55555555554433 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.4
     DUF4535  31 glekakeleea 41 
                 ++ k+k+l+e+
  CCE28886.1 284 KNPKIKDLIEK 294
                 55678887776 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 3.5
     DUF4535  24 vkklaakglekake 37 
                 ++k+++ ++ek k+
  CCE28886.1 319 LQKYVQDTIEKGKD 332
                 68888888888766 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.02
     DUF4535  26 klaakglekakeleea 41 
                 kl++ ++e++k+++e+
  CCE28886.1 376 KLFKDTVEEIKKILEK 391
                 8999**********97 PP

>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.15   5.5e+02      25      54 ..      67      96 ..      63     113 .. 0.68
   2 ?    2.4   0.2      0.04   1.4e+02      33      70 ..     124     161 ..     114     196 .. 0.73
   3 ?    3.0   0.2     0.026        95      37      91 ..     210     270 ..     202     294 .. 0.73
   4 ?    7.2   0.8    0.0013       4.8      22      80 ..     342     403 ..     340     408 .] 0.50

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.15
      Phasin 25 afakvqeeGsklfeaLvkeGeklekktkkv 54
                 f+ + + +skl +a v++G+++e   kk 
  CCE28886.1 67 SFTPAGRAASKLNKAAVEAGKTYEAAVKKL 96
                566667777778888888888877766554 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.04
      Phasin  33 GsklfeaLvkeGeklekktkkvaeekleevresvkskv 70 
                 G+ +++a  k+ e+++k+ +k+a++ ++++ +++k+ +
  CCE28886.1 124 GKSYVDAAFKDWETVRKTHQKEADKIISDAYNQLKELS 161
                 66677777788888888888888888888887776543 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.026
      Phasin  37 feaLvkeGeklekktkkvaeekleevr......esvkskveevkekaeeqwdklekafder 91 
                 +e+L + Ge++     k ++++ ++v+          +k+++v++ +ee+ +++  + de 
  CCE28886.1 210 VEKLQDMGENYSPDSMKLIDQTYSQVKdiimaeGGSAAKFDKVRKLVEEKAQQISGLSDEA 270
                 5777788888888888888888888886555553445667777777777777766665554 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0013
      Phasin  22 GLGafakvqeeGsklfeaLvkeGeklek...ktkkvaeekleevresvkskveevkekaeeq 80 
                 GLG +  +  +G++++++L + G+ ++k   +++k +++++ee+++ +++++e+ k+ +e++
  CCE28886.1 342 GLGKYLNMVPQGGDVLQKLQHIGQIADKhkdEGEKLFKDTVEEIKKILEKQSEKGKNIVEKA 403
                 66666666666666666666666544443335556666666666644444444333333222 PP

>> FIVAR  FIVAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       2.2   7.9e+03      36      52 ..      89     102 ..      76     106 .. 0.53
   2 ?   -0.7   0.2      0.73   2.6e+03      23      36 ..     145     158 ..     137     174 .. 0.69
   3 ?    8.7   0.0    0.0008       2.9       6      58 ..     203     254 ..     202     267 .. 0.86
   4 ?   -1.2   0.1      0.99   3.5e+03      31      55 ..     270     290 ..     250     307 .. 0.63
   5 ?    1.5   0.2      0.14   5.1e+02      30      61 ..     376     405 ..     364     408 .] 0.71

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.2
                 HHHHHHHC...TSTTTT CS
       FIVAR  36 lsaAnailnktnnpnat 52 
                 ++aA + l   + ++++
  CCE28886.1  89 YEAAVKKL---QSSTPD 102
                 33444444...444444 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.73
                 CC-CCHHHHHHHHH CS
       FIVAR  23 nydqdkkdaynnal 36 
                 ++d+ + dayn+ +
  CCE28886.1 145 EADKIISDAYNQLK 158
                 56666667777644 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0008
                 HHHHCCHHHHHCSCCCCCC-CCHHHHHHHHHHHHHHHC...TSTTTTCCCHHH CS
       FIVAR   6 kdsinqatntktssnysnydqdkkdaynnalsaAnailnktnnpnatveqVnq 58 
                 kd+in + ++++    +ny++d+ +  ++ +s+++ i+    ++ a  + V +
  CCE28886.1 203 KDTINRGVEKLQ-DMGENYSPDSMKLIDQTYSQVKDIIMAEGGSAAKFDKVRK 254
                 799999999997.99***********************777777777766665 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.99
                 HHHHHHHHHHHHC...TSTTTTCCC CS
       FIVAR  31 aynnalsaAnailnktnnpnatveq 55 
                 a +++++aA+  l+k+    +  ++
  CCE28886.1 270 AWKKGIEAAKPFLDKN----PKIKD 290
                 5566777777777666....44444 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHC...TSTTTTCCCHHHHHH CS
       FIVAR  30 daynnalsaAnailnktnnpnatveqVnqala 61 
                 + +++ ++++++il+k+  ++  ++ V++a++
  CCE28886.1 376 KLFKDTVEEIKKILEKQ--SEKGKNIVEKATK 405
                 56788999999999666..4466666666655 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.7   1.3e+04      50      71 ..      86     107 ..      75     111 .. 0.64
   2 ?    7.5   0.0    0.0018       6.5      49      82 ..     184     217 ..     140     217 .. 0.72
   3 ?   -0.3   0.0      0.47   1.7e+03      27      74 ..     250     295 ..     227     302 .. 0.63
   4 ?   -3.0   0.0       3.3   1.2e+04      25      38 ..     315     328 ..     303     339 .. 0.53
   5 ?    1.6   1.6      0.13   4.5e+02       5      54 ..     357     404 ..     355     408 .] 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.7
     DUF4404  50 aerlneaverFeeeHPklagvl 71 
                  ++ + av++   + P++++++
  CCE28886.1  86 GKTYEAAVKKLQSSTPDADQAV 107
                 4556667777777777776665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0018
     DUF4404  49 laerlneaverFeeeHPklagvlreildsLanmG 82 
                 +a   +ea++  +++HP ++ ++++ ++ L++mG
  CCE28886.1 184 IASLGKEAISDVADNHPGAKDTINRGVEKLQDMG 217
                 44445799*************************9 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.47
     DUF4404  27 eslaedieellaeedaaaeeeelaerlneaverFeeeHPklagvlrei 74 
                  ++++ +ee  ++ +  ++e    ++  ea++ F +++Pk++ ++++ 
  CCE28886.1 250 DKVRKLVEEKAQQISGLSDE--AWKKGIEAAKPFLDKNPKIKDLIEKN 295
                 45555555555555555555..34445567788888888888887765 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 3.3
     DUF4404  25 lLeslaedieella 38 
                 ++ +l++ ++ +++
  CCE28886.1 315 DMDDLQKYVQDTIE 328
                 33444444444444 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.13
     DUF4404   5 LekLheeLeqnesldeetralLeslaedieellaeedaaaeeeelaerln 54 
                 L+kL++  +  ++ ++e ++l ++  e+i+++l++++++ ++  ++e+++
  CCE28886.1 357 LQKLQHIGQIADKHKDEGEKLFKDTVEEIKKILEKQSEKGKN--IVEKAT 404
                 77887777777888888899999999*****99999988776..676665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1817  (0.101344); expected 358.6 (0.02)
Passed bias filter:                      794  (0.0442858); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 2670.89
//
Query:       CCE28887.1  [L=308]
Description: uncharacterized protein CPUR_02577 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-05   22.5  38.2    3.2e-05   22.5  38.2    1.1  1  PAT1             Topoisomerase II-associated protein PAT1
     0.0025   17.7  26.7     0.0037   17.1  26.7    1.4  1  RR_TM4-6         Ryanodine Receptor TM 4-6
     0.0051   15.7  25.6     0.0077   15.1  25.6    1.3  1  NPR3             Nitrogen Permease regulator of amino acid tr
     0.0062   16.0  34.0     0.0078   15.7  34.0    1.2  1  Nop53            Nop53 (60S ribosomal biogenesis)
     0.0076   15.2  34.1     0.0092   14.9  34.1    1.1  1  Dapper           Dapper
  ------ inclusion threshold ------
      0.013   12.7  23.9      0.013   12.7  23.9    1.0  1  GREB1            Gene regulated by oestrogen in breast cancer
      0.021   13.9  24.4      0.025   13.7  24.4    1.2  1  LAP1C            Lamina-associated polypeptide 1C (LAP1C)
      0.027   12.9  20.6      0.034   12.6  20.6    1.3  1  MCM_bind         Mini-chromosome maintenance replisome factor
       0.04   14.0  28.6      0.066   13.3  28.6    1.4  1  DUF2052          Coiled-coil domain containing protein (DUF20
      0.043   12.9  35.2      0.055   12.6  35.2    1.2  1  FAM222A          Protein family of FAM222A
      0.098   11.4  37.2       0.15   10.8  37.2    1.2  1  Presenilin       Presenilin
       0.12   12.0  18.4       0.16   11.6  18.4    1.3  1  CAC1F_C          Voltage-gated calcium channel subunit alpha,
       0.13   11.8  25.4       0.15   11.6  25.4    1.2  1  Exonuc_VII_L     Exonuclease VII, large subunit
       0.37   10.3  32.6       0.62    9.6  32.6    1.4  1  Lin-8            Ras-mediated vulval-induction antagonist
       0.74    9.0  16.1       0.95    8.6  16.1    1.3  1  Zip              ZIP Zinc transporter
       0.97    8.2  13.0        1.6    7.5  13.0    1.5  1  Otopetrin        Otopetrin
       0.97    8.0  28.2        1.3    7.6  28.2    1.3  1  Hamartin         Hamartin protein
          1    7.6  31.6        1.4    7.2  31.6    1.1  1  CDC45            CDC45-like protein
        2.3    7.6  21.8        3.2    7.1  21.8    1.3  1  DUF908           Domain of Unknown Function (DUF908)
        2.5    7.1  36.1        3.8    6.4  36.1    1.2  1  SLC12            Solute carrier family 12
        2.8    8.0  26.8        4.6    7.2  26.8    1.3  1  Asp-B-Hydro_N    Aspartyl beta-hydroxylase N-terminal region
        4.7    6.9  30.7        7.2    6.3  30.7    1.2  1  AAA_11           AAA domain
        7.6    6.9  39.4         20    5.6  39.4    1.7  1  Bud13            Pre-mRNA-splicing factor of RES complex
        9.3    5.1  26.4         14    4.5  26.4    1.2  1  XRN_M            Xrn1 helical domain


Domain annotation for each model (and alignments):
>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5  38.2   4.2e-08   3.2e-05     210     336 ..     136     254 ..      39     303 .. 0.54

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.2e-08
        PAT1 210 kkaaqaaaaaaasqqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqskqakpaepsasseaqeakqqappak 308
                 + ++q++++ +++qq ++ q++q+++   ++  +q+qq+++++++qq++q+q++q q++++q+++ ++ q++q++q+ ++++++ ++ +++k ++ p+ 
  CCE28887.1 136 EIQQQQKEHRQRQQQEQRRQQQQQQQ---QQ--QQQQQQQQQQERQQRQQQQQQQRQKQQQQQHQQQQQQQQQQQQKPQQQKMQGNQ-KQMKAHKRPVL 228
                 22222222222222222111111111...11..111111111112222222222222222222222222222222222222222222.22233333333 PP

        PAT1 309 vqptqilqnpnrlaarlelsqkeqaaaq 336
                 +  t  l np+  ++++  + ++ +  q
  CCE28887.1 229 HVCTTQL-NPKSRPNNVVRP-NNRYIPQ 254
                 2222223.444333333222.2222222 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1  26.7   4.9e-06    0.0037      85     170 ..     139     223 ..      48     233 .. 0.47

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.9e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHH CS
    RR_TM4-6  85 elkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkakskkkeeaeaeesellkklevy 170
                 +++k++ +++++e++++++++++++++++++++++e+++++++ ++++++++++++++++++++++++++ ++++++   k+++++
  CCE28887.1 139 QQQKEHRQRQQQEQRRQQQQQQQQQQQQQQQQQQQERQQRQQQ-QQQQRQKQQQQQHQQQQQQQQQQQQKPQQQKMQGNQKQMKAH 223
                 1111111111222222222222222222222222222222222.222233333333333333333334444444444444455554 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1  25.6     1e-05    0.0077      45     130 ..     138     221 ..      91     243 .. 0.47

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1e-05
        NPR3  45 rkskkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeeeeeededdeesekeeeekedkkknlt 130
                 ++++ k++++++++++r+++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++ + ++k+++
  CCE28887.1 138 QQQQ-KEHRQRQQQEQRRQQQQQQQQQQQQQQQQQQQERQQRQQQQQQQRQKQQQQQHQQQQ-QQQQQQQQKPQQQKMQGNQKQMK 221
                 2221.222222222222222222222222222222222222222222222222222222222.22222222224444444444444 PP

>> Nop53  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7  34.0     1e-05    0.0078     279     357 ..     136     216 ..      52     231 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1e-05
       Nop53 279 kkkpkrKTkaqRnkekrrkeeekeekeekkekkkeaqlerlkeikkevaekekeraeaaearkkekrkkka..ekkklkrr 357
                 + ++++K  +qR+ +++r++++++++++++++++++q er +  ++++++++k++++++++++++++++++  +++k++++
  CCE28887.1 136 EIQQQQKEHRQRQQQEQRRQQQQQQQQQQQQQQQQQQQERQQRQQQQQQQRQKQQQQQHQQQQQQQQQQQQkpQQQKMQGN 216
                 223344444455444444444444444444444444444444444444333333333333333222222221222222222 PP

>> Dapper  Dapper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9  34.1   1.2e-05    0.0092     293     454 ..      84     235 ..      54     283 .. 0.45

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
      Dapper 293 seslskaqqssstkt..vleassldgYIdkLlqrraqkvrtnkprtsvetdpsksilrqkslclrqpsgqksqsqtsdskeskqklllssgresageas 389
                 s++++ a+  +s++   ++++++ld+Y   Llq +  + r+ +p+ + + d+++ +++qk+ + rq ++q+ q+q++++++++q+  +++++e++++++
  CCE28887.1  84 SKHCNDATWPVSWNEggIYKKGDLDEYHRGLLQVTGTSDRLFRPSYR-RHDSEEIQQQQKEHRQRQQQEQRRQQQQQQQQQQQQQ-QQQQQQERQQRQQ 180
                 344444443344443334566669*********99999999888877.3333333334444444444443333333322222222.1222222222222 PP

      Dapper 390 tssplkqlskeskaeqqeskavlvsalekeepasskeeeskelnksslakkasqeeelsevakks 454
                 ++++++q++++++ +qq++++          ++++++ ++++++ ++++ ka+++  l+ ++++ 
  CCE28887.1 181 QQQQQRQKQQQQQHQQQQQQQ----------QQQQQKPQQQKMQGNQKQMKAHKRPVLHVCTTQL 235
                 222222222222222222111..........1111122222222221122222222222222222 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7  23.9   1.8e-05     0.013    1144    1225 ..     137     228 ..      46     275 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.8e-05
       GREB1 1144 pvkvekseskdavesglsskasakselse..........asaaaasaseeakspkasvtseeeeseeskekekeslsketesqlsleaseqk 1225
                   ++ +k++ +++++++ + ++++++++++          ++++++++++++k+++++ ++++++++++++k +++  + +++q++ ++    
  CCE28887.1  137 IQQQQKEHRQRQQQEQRRQQQQQQQQQQQqqqqqqqqerQQRQQQQQQQRQKQQQQQHQQQQQQQQQQQQKPQQQKMQGNQKQMKAHKRPVL 228 
                  11111111111111111111111111111000000000011111111111111111111111111111111111111111111111111111 PP

>> LAP1C  Lamina-associated polypeptide 1C (LAP1C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7  24.4   3.4e-05     0.025     110     206 ..     134     224 ..      42     254 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.4e-05
                 XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXX..XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       LAP1C 110 ktgradaqleessaalseeasdrtaasqepsaadsqeaqssghskaeqeeqdtlrrtrllvpeaeshqqetelleeskesaqdtlrkskkksfvkyk 206
                 +  + + q +e+  ++++e++ +++++q+++   +q+ q+++++++++++q++++r     ++++ hqq+++++++++++ q++  + ++k++   k
  CCE28887.1 134 SE-EIQQQQKEHRQRQQQEQRRQQQQQQQQQQ--QQQQQQQQQERQQRQQQQQQQR--Q-KQQQQQHQQQQQQQQQQQQKPQQQKMQGNQKQMKAHK 224
                 21.11222222222222222222222222222..1111111111111122222222..2.1233334444444444444444444444444433333 PP

>> MCM_bind  Mini-chromosome maintenance replisome factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  20.6   4.5e-05     0.034     116     194 ..     138     213 ..      48     237 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.5e-05
    MCM_bind 116 qekvesststlssrkKRsleeeeedeemdvsksekkeeissestkekeeeskssetekkskksasesklsaekllnfpl 194
                 q++++++++ ++++++R++++++++++++ ++++++e+++ ++  +++++++++++++++++++++++ +++k  + ++
  CCE28887.1 138 QQQQKEHRQRQQQEQRRQQQQQQQQQQQQQQQQQQQERQQ-RQ--QQQQQQRQKQQQQQHQQQQQQQQQQQQKPQQQKM 213
                 3333333333333444444222222222211111111111.11..1111111111111111111111112222222222 PP

>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  28.6   8.9e-05     0.066      58     153 ..     121     216 ..     102     248 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.9e-05
     DUF2052  58 seiLlrreeeaaaaerleaqqeeleeeeeeeeeeeeeeeeeeeeeeedekekaeadeedeeeeeekeekeeeeekeeeaeaevlseeereelreeF 153
                 s+ L+r   +++ +e +++qq+e ++++++e+ ++++++++++++++++++++e+++++++++++++++++++++++++++++ +++ ++++++  
  CCE28887.1 121 SDRLFRPSYRRHDSEEIQQQQKEHRQRQQQEQRRQQQQQQQQQQQQQQQQQQQERQQRQQQQQQQRQKQQQQQHQQQQQQQQQQQQKPQQQKMQGN 216
                 566666666666666666666665444444444444433333333333333333333333333333333333333333333333333344443333 PP

>> FAM222A  Protein family of FAM222A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  35.2   7.3e-05     0.055     128     223 ..     136     233 ..      49     245 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.3e-05
     FAM222A 128 alqkqqslsqvlaaqaqtlthpqsipqpqslkhpqalqqkq.qglqhaqglaqsqalahaagpptqtqalqqpp.pglyGsrklpDaDaPPnvtvsts 223
                  +q+qq  ++   +q+q+ ++ q+++q+q  ++ q++q++q ++ q++q+ +++q+ +h++   +q+q+ q+p+   ++G++k   a   P + v t 
  CCE28887.1 136 EIQQQQKEHRQRQQQEQRRQQQQQQQQQQQQQQQQQQQERQqRQQQQQQQRQKQQQQQHQQQQQQQQQQQQKPQqQKMQGNQKQMKAHKRPVLHVCTT 233
                 23333332222223333333333333333222222222222122223333333333444444444555555555456788888888888888887775 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  37.2    0.0002      0.15     232     318 ..     138     216 ..     120     259 .. 0.40

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
  Presenilin 232 vaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessesseeeeeeeeeeeesese 318
                 +++++e++++++++++ ++++++++++++++++++q++++++++++++++++++++++++++++++++++         ++++++++
  CCE28887.1 138 QQQQKEHRQRQQQEQRRQQQQQQQQQQQQQQQQQQQERQQRQQQQQQQRQKQQQQQHQQQQQQQQQQQQKP--------QQQKMQGN 216
                 11111111111111111112222222221112122221111111111111111111111111111111111........11111111 PP

>> CAC1F_C  Voltage-gated calcium channel subunit alpha, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  18.4   0.00022      0.16      71     177 ..     122     214 ..      32     254 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00022
     CAC1F_C  71 dslsapsddrgvsskissrkpsvkqslssetkrsskvevltedsegsaklkaevsgekglekqeeeeeevvssekraaldeqaetteevvllqplrseh 169
                 d+l +ps +r  s +i++++ + +q+  +e++r+++++  +++++++++++ e +                ++++++++++q++++++   +q++++++
  CCE28887.1 122 DRLFRPSYRRHDSEEIQQQQKEHRQRQQQEQRRQQQQQQQQQQQQQQQQQQQERQQ--------------RQQQQQQQRQKQQQQQHQQQQQQQQQQQQ 206
                 23333444444444444444444444444444444444443333333333333222..............22222233333333333333333333333 PP

     CAC1F_C 170 apyseeia 177
                 +p +++++
  CCE28887.1 207 KPQQQKMQ 214
                 33233222 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  25.4   0.00019      0.15     143     250 ..     135     221 ..      47     254 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
  Exonuc_VII_L 143 aeleeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkq.lkkkrerleelkerlkekleekkerlkklker 238
                   +e+++q +e ++r +++ +r+ ++++q+ ++ +++ +++e+  +r++q+ ++ +++ ++++++q  ++++++ +  +    +k              
    CCE28887.1 135 EEIQQQQKEHRQRQQQEQRRQQQQQQQQQQQQQQQQQQQER-QQRQQQQQQQRQKQQQQQHQQQqQQQQQQQQKPQQ----QK-------------- 212
                   33333333333333333333333222222222222211111.11111111111111111111110111111111111....11.............. PP

  Exonuc_VII_L 239 lelleekkerle 250
                      ++ ++++++
    CCE28887.1 213 ---MQGNQKQMK 221
                   ...111111111 PP

>> Lin-8  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  32.6   0.00083      0.62     153     254 ..     135     219 ..     106     260 .. 0.42

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00083
       Lin-8 153 eegedteeeekveveeeaeeqgsmdlketeaeevkeeqmeqsfeeeeeakleeptvniveeeaaaravdqsfgsaeqqlessssrtssassssssaaps 251
                 ee +++++e + + ++e+  q++ + +++++++++++        ++e ++++ ++++ ++++++++++q++++++qq+          + ++++ + +
  CCE28887.1 135 EEIQQQQKEHRQRQQQEQRRQQQQQQQQQQQQQQQQQ--------QQERQQRQQQQQQQRQKQQQQQHQQQQQQQQQQQ---------QKPQQQKMQGN 216
                 1111111111111111111111111111111111111........1111222222222222222222222222222221.........11111111222 PP

       Lin-8 252 sta 254
                 +++
  CCE28887.1 217 QKQ 219
                 222 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  16.1    0.0013      0.95     102     184 ..     123     213 ..      63     231 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0013
         Zip 102 k.......ksshkektpkkasssssesaakksvsndkveeseek..edhvaeadtdadskeelrngkqeksesekeqaseeedkeklaslkv 184
                 +         + +e++++++++++++++ +++ ++++ +++++   ++++++++ +++++++++++kq++++++++q++++++++k++++k+
  CCE28887.1 123 RlfrpsyrR-HDSEEIQQQQKEHRQRQQQEQRRQQQQQQQQQQQqqQQQQQQERQQRQQQQQQQRQKQQQQQHQQQQQQQQQQQQKPQQQKM 213
                 045555532.3333333333333333333333333333333333003333333344444445555555555555555556666666666655 PP

>> Otopetrin  Otopetrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  13.0    0.0021       1.6     104     155 ..     152     204 ..     128     302 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0021
   Otopetrin 104 ke.esaeeassssssaridalrkakkvltkstakekiisarleqrtastesqs 155
                 ++ +++++++++++++++++++++++ +++++++ ++++++ +q+++++++q+
  CCE28887.1 152 QRrQQQQQQQQQQQQQQQQQQQERQQRQQQQQQQRQKQQQQQHQQQQQQQQQQ 204
                 11111111111111111111111111111111111111111111111111111 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  28.2    0.0017       1.3     467     595 ..     101     224 ..      27     265 .. 0.48

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0017
    Hamartin 467 vekeeeeaaisqelseiteekketlvsrggldspfsrtleslaksqrrkrlasalssesisdaegaatkkeaksskeaesslekekscsakqsftpieq 565
                 + k+ + ++ ++ l+++t +     + r      +s+++++  k++r+++ + +  ++   +++++ +++++++++++e++ +++++++  q+ +++++
  CCE28887.1 101 IYKKGDLDEYHRGLLQVTGTSDR--LFRPSYRRHDSEEIQQQQKEHRQRQQQEQRRQQ---QQQQQQQQQQQQQQQQQERQQRQQQQQQQRQKQQQQQH 194
                 35666667777778887777722..355555555555555555555422222222222...11222222221223333333333333333333333333 PP

    Hamartin 566 klesskdcpadeeesensleeklltpspck 595
                 + +++++ +++++ ++++ + +  ++++ k
  CCE28887.1 195 QQQQQQQQQQQQKPQQQKMQGNQKQMKAHK 224
                 333333333333333333333333333332 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  31.6    0.0018       1.4     125     228 ..     136     225 ..     104     236 .. 0.39

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0018
       CDC45 125 aleeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee..sddddersrkrrrsepsakklrrqlkkerrkyeavlekyys 221
                 ++++++++                + ++++++++++++++++++++++++++++e+  ++++++++r++++++++++++++q++++++ ++++++ + +
  CCE28887.1 136 EIQQQQKE----------------HRQRQQQEQRRQQQQQQQQQQQQQQQQQQQERqqRQQQQQQQRQKQQQQQHQQQQQQQQQQQQKPQQQKMQGNQK 218
                 11111111................111111111111111111111111111111111122222222333333323333333344444444444454555 PP

       CDC45 222 qgtsyge 228
                 q + + +
  CCE28887.1 219 QMKAHKR 225
                 5444444 PP

>> DUF908  Domain of Unknown Function (DUF908)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  21.8    0.0043       3.2      86     221 ..      54     220 ..      29     257 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0043
      DUF908  86 drllklAqpfpktpvsdssakaasek........................kastteyaldlvslakedskv.....lpsewgdvkvtYYkkssseeqka 155
                 dr++ +A+  ++ + + +++ +++++                        k    ey+ +l++++ ++++      +  ++ +++ +  ++ ++++q++
  CCE28887.1  54 DRIQDMASTKAQLSKPRAASVPSASEttwnskhcndatwpvswneggiykKGDLDEYHRGLLQVTGTSDRLfrpsyRRHDSEEIQQQQKEHRQRQQQEQ 152
                 555555554444443333333322224556666777777777777888877778888888888888877777777733344444433333333333333 PP

      DUF908 156 esksskeeasesli.ssspstPtplrrssklgk...tssspsspaktstpskaaksqeglktfeipesev 221
                   ++++++++++++ +++++ + + r+++++++   +  ++++++++++++++++++ +++ ++ +++++
  CCE28887.1 153 RRQQQQQQQQQQQQqQQQQQQERQQRQQQQQQQrqkQ--QQQQHQQQQQQQQQQQQKPQQQKMQGNQKQM 220
                 3333333333222222233333333333333322211..1222222222222222222222333333333 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  36.1    0.0051       3.8     126     217 ..     134     225 ..     124     251 .. 0.38

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0051
       SLC12 126 vsellqeeeeeeeekekkeaeesekeeeekkkakkkklleekskekeekekleekdsnlslseekkeeekekkkekkkkkekkeklkkkeks 217
                  +e++q+++e++++++++++++++++++++++++++++++e++++++++++  +k+++++ ++++++++++++k++++k + ++k++k++k+
  CCE28887.1 134 SEEIQQQQKEHRQRQQQEQRRQQQQQQQQQQQQQQQQQQQERQQRQQQQQQQRQKQQQQQHQQQQQQQQQQQQKPQQQKMQGNQKQMKAHKR 225
                 34444444333333332222222222222222222222222222222222222222222222222223333333333333333333333332 PP

>> Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  26.8    0.0062       4.6     107     198 ..     135     225 ..     122     262 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0062
  Asp-B-Hydro_N 107 Eqlkkvkeeivvke.eeeegieeepqleeekkllkedsderqeeleagkvkeevEeslkveetvseeakkdmkekaseeenekskepveeaek 198
                    E++++ ++e  +++ +e++++++++q+++++++ +++++erq+ ++ ++++++  ++ +  + +++++++  ++k ++++++ +++ ++ +++
     CCE28887.1 135 EEIQQQQKEHRQRQqQEQRRQQQQQQQQQQQQQQQQQQQERQQRQQQQQQQRQKQQQQQHQQQQQQQQQQ--QQKPQQQKMQGNQKQMKAHKR 225
                    3444333333333312233333333333333334444444444444444443333222222222222222..444444444444444333322 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  30.7    0.0097       7.2     100     189 ..     133     221 ..     104     236 .. 0.47

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0097
      AAA_11 100 iseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaeesle 189
                  se++++ + e+++++++e+++++q++++ ++++ +++++ +++++ +++++++++k++++++++q++++ ++++k  +++++  +++++
  CCE28887.1 133 DSEEIQQQQKEHRQRQQQEQRRQQQQQQQQQQQQ-QQQQQQQERQQRQQQQQQQRQKQQQQQHQQQQQQQQQQQQKPQQQKMQGNQKQMK 221
                 3444555554555554444443222222222222.2222222222222233344444444444444444444444444555555555444 PP

>> Bud13  Pre-mRNA-splicing factor of RES complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  39.4     0.027        20      10     106 ..     130     236 ..     125     254 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.027
       Bud13  10 rkidleekreaeaekkkkeeeekeekkkewgkGlvq..keekekrleelekekkkplaryaddedlneelkekerwdDPmaaflkkkkkkkkkkskkk. 105
                 r+ d ee++++++e+++++++e+++++++ ++ + q  ++++++++++ +++++++  +++++++ +++++++++++ P ++ ++ ++k ++k +k + 
  CCE28887.1 130 RRHDSEEIQQQQKEHRQRQQQEQRRQQQQQQQQQQQqqQQQQQQERQQRQQQQQQQRQKQQQQQHQQQQQQQQQQQQKPQQQKMQGNQK-QMKAHK-Rp 226
                 56666664334444333333333333333333333300333333333333333333444455555566666677777888888885553.333222.12 PP

       Bud13 106 .........k 106
                          +
  CCE28887.1 227 vlhvcttqlN 236
                 4555555552 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  26.4     0.018        14      77     162 ..     135     207 ..     105     227 .. 0.38

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.018
       XRN_M  77 ekifrkrkeredrkekklakeeeaskedaaneeaavaeeklseskvaksaeaeaeaeaeaeaeakaekekrekaekeleeseeeee 162
                 e+i +++ke+++r+++++ +++++++++++++++++++++ ++++ +             ++++++++++++++++++++++++++
  CCE28887.1 135 EEIQQQQKEHRQRQQQEQRRQQQQQQQQQQQQQQQQQQQERQQRQQQ-------------QQQQRQKQQQQQHQQQQQQQQQQQQK 207
                 33444444444333333333333333333222222222222222222.............11111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      5874  (0.327626); expected 358.6 (0.02)
Passed bias filter:                     1545  (0.0861732); expected 358.6 (0.02)
Passed Vit filter:                      1127  (0.0628591); expected 17.9 (0.001)
Passed Fwd filter:                       271  (0.0151152); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 2.12u 0.36s 00:00:02.48 Elapsed: 00:00:00.59
# Mc/sec: 1582.27
//
Query:       CCE28888.1  [L=1021]
Description: probable pre-mRNA splicing protein PRP2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-21   75.7   0.0    6.4e-21   74.5   0.0    1.7  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    1.2e-16   61.0   0.0    1.2e-16   61.0   0.0    3.4  1  HA2          Helicase associated domain (HA2)
    1.4e-14   54.4   0.0    4.3e-14   52.8   0.0    1.8  1  Helicase_C   Helicase conserved C-terminal domain
      5e-06   26.8   0.0    1.5e-05   25.3   0.0    1.8  1  AAA_22       AAA domain
    2.4e-05   24.2   0.1    4.9e-05   23.2   0.1    1.5  1  DEAD         DEAD/DEAH box helicase
     0.0012   18.6   0.0     0.0027   17.5   0.0    1.6  1  AAA_30       AAA domain
     0.0017   17.5   0.0     0.0042   16.2   0.0    1.6  1  T2SSE        Type II/IV secretion system protein
  ------ inclusion threshold ------
       0.01   15.4   0.1       0.02   14.5   0.1    1.5  1  SRP54        SRP54-type protein, GTPase domain
       0.03   14.7   0.1      0.071   13.4   0.1    1.6  1  AAA_19       AAA domain
      0.038   14.5   0.5       0.39   11.2   0.0    2.5  2  ABC_tran     ABC transporter
      0.063   12.7   0.1       0.26   10.7   0.0    1.9  2  PhoH         PhoH-like protein


Domain annotation for each model (and alignments):
>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   3.9e-24   6.4e-21       1      82 [.     922    1001 ..     922    1002 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 3.9e-24
                   HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHSTT CS
  OB_NTP_bind    1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfagq 82  
                   ++++++aG++p+ ar ++s+ +y+t++++t v +hpsSvl    ++ +++ v+y elv+ttk y+r++++i++ wL+++a++
   CCE28888.1  922 IKRAITAGFFPNAARLQRSGDSYRTVKNNTTVWVHPSSVLMA--VDPPEKMVIYFELVQTTKEYMRGVIPIETKWLAELAPH 1001
                   799**************************************6..779*********************************97 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   7.2e-20   1.2e-16       1     107 [.     773     862 ..     773     895 .. 0.82

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 7.2e-20
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsv.eeifleeneeekeeeeeeeekakkkrkeeekarrklah 98 
                 Al +L+al+ L+++g+lT++Gr+mae+P +p+lak  laa   +egc++ev++iv++l   + +f ++++++   ++      +++r+  +        
  CCE28888.1 773 ALSQLFALQGLNHKGELTKMGRQMAEFPTDPMLAKAVLAA--DKEGCVEEVLSIVSMLGEaSALFFRPKDKKIHADS------ARNRFTVK-------- 855
                 899*************************************..556*************9537778888765443322......11122111........ PP

         HA2  99 kdaegDhlt 107
                   + gDh+t
  CCE28888.1 856 --DGGDHVT 862
                 ..2466666 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   2.6e-17   4.3e-14      11     111 .]     584     711 ..     572     711 .. 0.83

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 2.6e-17
                 HHTTTTSEEEEEESSHHHHHH........HHHHHHHT.......TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS CS
  Helicase_C  11 kleeeggkilifvntidrlek........vklllekk.......gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp 94 
                 ++++ +g+ilif++ +d++e         +      +       ++ v++++++lp++ + +i+e   +g ++v++at++ae++++i+++ +Vi+ ++ 
  CCE28888.1 584 HTTQPKGDILIFLTGQDEIEAaeleitetA------RklgsrvkELVVCPIYANLPSDLQAKIFEPTPNGARKVVLATNIAETSLTIDGIVYVIDPGYV 676
                 68899************8876653433222......134455669*************************************************99999 PP

                 SSH..................HHHHHHHTTSSSTT CS
  Helicase_C  95 rnv..................tsyiqriGRtgRag 111
                 ++                   +s++qr+GR+gR+g
  CCE28888.1 677 KENiynpatgmsnlvvvpcsrASANQRSGRAGRVG 711
                 553356688999999******************97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   9.1e-09   1.5e-05       5     127 ..     396     531 ..     392     540 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 9.1e-09
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellralglelka.............erlsseellealeqalra 88 
                  +ilv++Ge+G+GKTt l ++l+++          +  ++v ++++      +++ ++++++g++  +                  + +l+++++ +  
  CCE28888.1 396 YQILVIVGETGSGKTTQLPQYLHEAG-------YTKNGMKVGCTQPRrvAAMSVAARVAEEVGVKVGNevgysirfedctsD----KTVLKYMTDGMLL 483
                 689*********************94.......3666678888888877999999999999999988899999999865542....2233333333222 PP

      AAA_22  89 rav........ielliiDEaqhlr..seealeeLrsllnlsrkgvqliL 127
                 r           ++l+iDEa+  +  ++ +l  +++l+  +rk+++l++
  CCE28888.1 484 REFmtepdlagYSALMIDEAHERTvhTDILLALIKDLAR-DRKDLKLLI 531
                 2223455578888*********65544667777799887.688887765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1     3e-08   4.9e-05      14     170 ..     396     537 ..     383     543 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3e-08
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH.TTCSEEEEEHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld.ngvdivvgtpgrlddl 111
                  + +++ +eTGsGKT+     + ++ y   +k+g k+ +  P r  a  ++ ++ +      ++v   +g   ++   ++    ++ + ++t g+l++ 
  CCE28888.1 396 YQILVIVGETGSGKTTQLPQYLHEAGY---TKNGMKVGCTQPRRVAAMSVAARVAEEVG---VKVGNEVG---YSIRFEDCTsDKTVLKYMTDGMLLRE 485
                 4456799*********98888887777...6********************99988777...55554444...33334444314477789********7 PP

                 HHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 112 lstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 + t+  +l   + l +DEa++       d + ++++ l++  +d k    +++ SAT++
  CCE28888.1 486 FMTEP-DLAGYSALMIDEAHERTVH--TDILLALIKDLARDRKDLK----LLISSATMN 537
                 75555.7**************9997..9999999999977777766....********8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.7e-06    0.0027      16     110 ..     395     518 ..     386     530 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.7e-06
      AAA_30  16 sgdrvavltGpAGtGKttalkal..reaweaag........grviglAptgkaAkvLaeelg....i.....eastiakllkrlk.........grarl 86 
                 +  ++ v++G  G+GKtt l ++  ++ ++++g        +rv++++  +++A++++ ++g          ++ + + +lk ++          + +l
  CCE28888.1 395 QY-QILVIVGETGSGKTTQLPQYlhEAGYTKNGmkvgctqpRRVAAMSVAARVAEEVGVKVGnevgYsirfeDCTSDKTVLKYMTdgmllrefmTEPDL 492
                 44.599**************9987555677778888888888888888888888888854442222133333333333333333355666666655677 PP

      AAA_30  87 epgtllivDEag..mvdtkqlaallk 110
                 +  + l++DEa    v t+ l al+k
  CCE28888.1 493 AGYSALMIDEAHerTVHTDILLALIK 518
                 88899999998522345555555555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.6e-06    0.0042     100     153 ..     368     420 ..     353     429 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.6e-06
       T2SSE 100 akeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkei 153
                 +k+l++++ +++    +  +++l++  ++++++++ G TgsGKtt l   l+e 
  CCE28888.1 368 KKALSIQETRKSLPIYQYRDSFLEAL-EQYQILVIVGETGSGKTTQLPQYLHEA 420
                 55566666666666667777888877.88999999************9888876 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.2e-05      0.02       3      61 ..     398     456 ..     396     545 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
                 EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEE CS
       SRP54   3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvik 61 
                 ++++vG +G+GKTt l +  +     ++ + + ++   R+aA+   + +ae++gv+v +
  CCE28888.1 398 ILVIVGETGSGKTTQLPQYLHEAGYTKNGMKVGCTQPRRVAAMSVAARVAEEVGVKVGN 456
                 789***************999999999999999*********************99754 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   4.4e-05     0.071      10     129 ..     396     524 ..     390     531 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.4e-05
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae................atTiHrlalldfddlltealelle 92 
                  ++l++++  G+GKT+ l + ++++  +++    ++ +  + + Aa+ ++ r+a+   e                 +T  +  +l++ ++      ll+
  CCE28888.1 396 YQILVIVGETGSGKTTQLPQYLHEAGYTKNG--MKVGCTQPRRVAAMSVAARVAE---EvgvkvgnevgysirfeDCTSDKT-VLKYMTDG----MLLR 484
                 5678999************999998877754..5666666666666666665522...122234445666666664444444.23333333....2444 PP

      AAA_19  93 eaeeekklqeee.llivDEfqd..vd.elqyrLlkallgek 129
                 e  +e +l +++ +l++DE+ +  v  +   +L+k l+ ++
  CCE28888.1 485 EFMTEPDL-AGYsALMIDEAHErtVHtDILLALIKDLARDR 524
                 55667888.7777******9872244455666777776555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.63     1e+03      85     117 ..     110     142 ..      37     146 .. 0.64
   2 ?   11.2   0.0   0.00024      0.39       8      28 ..     393     413 ..     390     436 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.63
                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrv 117
                  + a ++++ ++++ t+ +++ ++LS G k+ +
  CCE28888.1 110 EASASKRMKFSHDERTRDDENEANLSDGAKEEL 142
                 4456677888888888888888******99866 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00024
                 EETTSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLl 28 
                 l++ ++++ivGe+G+GK+t l
  CCE28888.1 393 LEQYQILVIVGETGSGKTTQL 413
                 678899************965 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.97   1.6e+03      43      61 ..     202     220 ..     200     237 .. 0.82
   2 ?   10.7   0.0   0.00016      0.26      10      33 ..     387     410 ..     381     416 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.97
                 HHHTTS-SEEEEEE-S--T CS
        PhoH  43 alkkkkvkriiltrpavea 61 
                 +lkk++ +r++l+r +v  
  CCE28888.1 202 YLKKRETERLVLLRKQVAE 220
                 6899**********99954 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00016
                 HHHHHHHHH-SEEEEE--TTSSTT CS
        PhoH  10 keylealkkndivfaiGpaGtGKt 33 
                 +++leal++++i++++G++G+GKt
  CCE28888.1 387 DSFLEALEQYQILVIVGETGSGKT 410
                 57899******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1328  (0.0740699); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 6882.35
//
Query:       CCE28889.1  [L=417]
Description: related to SCJ1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-29  101.6   0.0    5.7e-29  101.1   0.0    1.2  1  DnaJ_C          DnaJ C terminal domain
    1.2e-25   89.4   1.8    1.9e-25   88.7   1.8    1.4  1  DnaJ            DnaJ domain
    2.1e-14   53.6  17.3    3.5e-14   52.9  17.3    1.4  1  DnaJ_CXXCXGXG   DnaJ central domain
    7.6e-05   22.7   6.7      0.075   13.1   1.4    2.3  2  HypA            Hydrogenase/urease nickel incorporation, meta
     0.0012   18.8   8.4       0.13   12.3   1.5    2.4  2  Anti-TRAP       Tryptophan RNA-binding attenuator protein inh
  ------ inclusion threshold ------
       0.84    9.6   0.1       0.84    9.6   0.1    3.4  4  DUF35_N         Rubredoxin-like zinc ribbon domain (DUF35_N)
        1.2    8.8   7.1          2    8.1   0.6    2.3  2  TackOD1         Thaumarchaeal output domain 1


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   0.0   2.2e-32   5.7e-29       1     148 []     133     372 ..     133     372 .. 0.89

  Alignments for each domain:
  == domain 1  score: 101.1 bits;  conditional E-value: 2.2e-32
                 EEEEEEE-HHHHHH-.EEE.EEEE.........................................................................TE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................xxxxxx RF
      DnaJ_C   1 ieveleisleelykGktkkikikrnvi..................................................................kkekkt 33 
                 +ev++ isl+++y+G+t++++ +r+ i                                                                  +++ ++
  CCE28889.1 133 VEVKVAISLRDFYNGATTEFQWERQHIcehcegtgsadghvetcstcgghgfrivkqqlapgmfqqmqmrcdvcggrgksikhkcpvcqgqrvERKPTK 231
                 689**********************99****************************************************************65444449 PP

                 EEEEE-TT--TT-EEEETT-SSSS...S---EEEEEE.E---S..........S-EEETTEEEEEEEEEHHHHHHT......EEE..EEE-SS-EEEE. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxx..........xxxxxxxxxxxxxxxxxxxxxxx......xxx..xxxxxxxxxxx. RF
      DnaJ_C  34 levkipaGikdgqkirlegeGdeeg.gepGDlivtik.vkphp..........vFkrkgndlyveveislaeallG......gkl..evptldgkvkl. 111
                 +++k+++G   +++i++e+e+de++ + +GDlivt+  ++p+p          +F+rkg+dly +  +sl+ea++G      ++l          v+l 
  CCE28889.1 232 VTLKVERGAGRNSRIVYENEADESPdWIAGDLIVTFAeKTPSPednpegvdgiYFRRKGDDLYWTEVLSLREAWMGdwsrnlTHLdsH------VVRLg 324
                 ************************************986566644455555556*********7779*********876555444332......23446 PP

                 ....EE--TT-EEEETT-S-EET..........TEE--EEEEEEEE-- CS
                 ....xxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxx RF
      DnaJ_C 112 ....kitqpgevlrikgkGmpklk.......kpgkrGdlyvevkvefP 148
                     +i+q+g+v ++ g+Gmpk++       +++++G+lyv+++v++P
  CCE28889.1 325 rprgQIVQSGQVETVVGEGMPKWHeegdsvyHKYEFGNLYVTYEVVLP 372
                 66669*****************************************99 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   1.8   7.5e-29   1.9e-25       1      63 []      23      85 ..      23      85 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 7.5e-29
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                dyY++Lgvsk+a+++++k+aYrkl++kyHPDknp+d++a+e+F +++eAy+vLs++e Rk YD
  CCE28889.1 23 DYYNVLGVSKEATDKQLKSAYRKLSKKYHPDKNPGDETAKENFVQVSEAYDVLSNAEMRKVYD 85
                8*************************************************************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9  17.3   1.4e-17   3.5e-14       1      66 [.     160     223 ..     160     224 .. 0.91

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 1.4e-17
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgkkktCktCkGsG.vvreeqktlgp.fvqqsqstCpeCeGtGkvikekdkCkkCkGk 66 
                    C++C+G+g+++g+++tC+tC+G+G +++++q  l+p ++qq+q++C+ C+G+Gk i  k+kC+ C+G+
     CCE28889.1 160 CEHCEGTGSADGHVETCSTCGGHGfRIVKQQ--LAPgMFQQMQMRCDVCGGRGKSI--KHKCPVCQGQ 223
                    *********99*************5555555..88889******************..778******8 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.3   5.3e-05      0.14      70     101 ..     157     188 ..     139     191 .. 0.83
   2 !   13.1   1.4   2.9e-05     0.075      67      99 ..     197     227 ..     195     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.3e-05
                 EEEETTTS-EEECHHHHHS-TTTSSS-EEEEE CS
        HypA  70 kvrCreCgkefeleekalrCpkCgsadveivs 101
                 +  C++C+ +++ + + ++C +Cg+++++iv+
  CCE28889.1 157 QHICEHCEGTGSADGHVETCSTCGGHGFRIVK 188
                 568********98877678*********9986 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.9e-05
                 E--EEEETTTS-EEECHHHHHS-TTTSSS-EEE CS
        HypA  67 vpvkvrCreCgkefeleekalrCpkCgsadvei 99 
                 +++++rC++Cg ++++ ++  +Cp C++++ve 
  CCE28889.1 197 QQMQMRCDVCGGRGKSIKH--KCPVCQGQRVER 227
                 5789**********97744..8******99875 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   1.5   4.9e-05      0.13      12      41 ..     159     184 ..     154     190 .. 0.86
   2 !   10.1   0.7   0.00024       0.6       9      41 ..     199     225 ..     195     231 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.9e-05
                 E-TTTTTTSEETTE......E-TTTTTSSE CS
   Anti-TRAP  12 kCdaCngsGkiepeeprasleCPkCsGkgl 41 
                  C++C+g+G +++        C  C+G+g+
  CCE28889.1 159 ICEHCEGTGSADGH----VETCSTCGGHGF 184
                 6***********99....668*******97 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00024
                 CEEE-TTTTTTSEETTE......E-TTTTTSSE CS
   Anti-TRAP   9 LEtkCdaCngsGkiepeeprasleCPkCsGkgl 41 
                 +   Cd C g Gk          +CP C+G+ +
  CCE28889.1 199 MQMRCDVCGGRGKSIKH------KCPVCQGQRV 225
                 6679*********9999......9******986 PP

>> DUF35_N  Rubredoxin-like zinc ribbon domain (DUF35_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00033      0.84      16      33 ..     148     165 ..     147     169 .. 0.83
   2 ?   -0.6   0.4      0.52   1.3e+03      27      34 ..     175     182 ..     173     185 .. 0.66
   3 ?   -2.2   0.9       1.6     4e+03      13      18 ..     202     207 ..     201     209 .. 0.82
   4 ?    0.1   0.1       0.3   7.7e+02      26      34 ..     215     223 ..     213     226 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00033
     DUF35_N  16 dCGtvqfPPravCphCgs 33 
                 ++  +q+ ++++C hC +
  CCE28889.1 148 ATTEFQWERQHICEHCEG 165
                 57789***********54 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.52
     DUF35_N  27 vCphCgsd 34 
                  C+ Cg+ 
  CCE28889.1 175 TCSTCGGH 182
                 57777765 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.6
     DUF35_N  13 rCpdCG 18 
                 rC+ CG
  CCE28889.1 202 RCDVCG 207
                 899998 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.3
     DUF35_N  26 avCphCgsd 34 
                 + Cp C + 
  CCE28889.1 215 HKCPVCQGQ 223
                 679999765 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.1     0.014        35      68      94 ..     152     180 ..     142     191 .. 0.69
   2 ?    8.1   0.6   0.00078         2      64     101 ..     191     228 ..     184     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.014
     TackOD1  68 elvdrirlCpsCksghln..vrevCpkCk 94 
                    +r+++C++C++        e+C+ C+
  CCE28889.1 152 FQWERQHICEHCEGTGSAdgHVETCSTCG 180
                 55678888888886543212678888886 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00078
     TackOD1  64 lleeelvdrirlCpsCksghlnvrevCpkCkSidieeq 101
                 l    + + ++ C+ C +   ++++ Cp C+  ++e++
  CCE28889.1 191 LAPGMFQQMQMRCDVCGGRGKSIKHKCPVCQGQRVERK 228
                 444677788899*******************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      712  (0.0397122); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2899.68
//
Query:       CCE28890.1  [L=298]
Description: uncharacterized protein CPUR_02580 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-26   92.2   0.0    6.1e-26   91.4   0.0    1.4  1  FSH1      Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   3.4e-30   6.1e-26       6     208 ..       2     236 ..       1     240 [. 0.87

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 3.4e-30
        FSH1   6 kiLcLhGytqsgeiFraktsalrkllkk.lnvelvyldaplelaekadlpkseseeee........................kseeeeesraWfrkkde 79 
                 k LcLhG   +++ F+a+++ + k+ +k  ++++  +++ +e+ ++a ++++  + +                          ++ e++ r+ ++++  
  CCE28890.1   2 KFLCLHGAFGNASNFQAQLGPFVKATSKsGQISFKWISGRHEAIPPAGFSDYFGRGTLyrfipfdgiealddvlhkldefpqGATAEDTIRQLIQSDYG 100
                 89************************997799***********9***9999966666699***********9999999999655666666666666665 PP

        FSH1  80 .kneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkeashp.slkfailvsGfkleepk.......yeeyy..eedkiqtptLhv 167
                  + + +g+++s++++ d++++  ++ Gi+GFS+Ga+ aa  + + ++l +e+  p +lk+ il++G  + ++k              +ed i +pt hv
  CCE28890.1 101 sQYTLDGVRNSIEYILDAVRKDPEIEGILGFSEGATAAASAILEEKRLWEEEGVPrQLKCGILFAGWPPLSLKggqcnviL---AdeSEDAIDIPTCHV 196
                 788999*******************************999999999888888655268***********999977665552...13469********** PP

        FSH1 168 lGelDtvvdeerseaLaeafkns.skvlkHpggHfvPnkkey 208
                 +G++D  +d   +++L+ +++++ + ++ H  gHfvP++ ++
  CCE28890.1 197 VGSDDPYID--GAMSLHSMCDQDsAVLFDHGSGHFVPREPKT 236
                 *********..9999********888899********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2254.08
//
Query:       CCE28891.1  [L=977]
Description: uncharacterized protein CPUR_02581 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-05   25.1  45.9    0.00011   22.9   4.7   11.0 11  DUF3824   Domain of unknwon function (DUF3824)
  ------ inclusion threshold ------
        2.7    8.1   7.4        3.7    7.6   0.1    3.8  4  DUF3759   Protein of unknown function (DUF3759)
          3    7.4   9.3        1.1    8.8   0.3    3.3  3  DUF533    Protein of unknown function (DUF533)


Domain annotation for each model (and alignments):
>> DUF3824  Domain of unknwon function (DUF3824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.72   4.3e+03      29      63 ..      30      61 ..      18      70 .. 0.52
   2 ?  -10.9  15.9         3   1.8e+04      29     112 ..      81     162 ..      64     202 .. 0.51
   3 ?  -13.4  17.9         3   1.8e+04      32      73 ..     202     254 ..     174     263 .. 0.61
   4 ?   -2.5   0.1       1.3   7.6e+03       7      26 ..     289     308 ..     285     328 .. 0.67
   5 !    5.1   1.3    0.0055        33       7      52 ..     331     376 ..     319     383 .. 0.73
   6 !    5.5   6.0    0.0044        26       1      41 [.     387     430 ..     387     431 .. 0.50
   7 !   22.9   4.7   1.8e-08   0.00011       1      50 [.     430     478 ..     430     517 .. 0.79
   8 ?   -5.0   5.4         3   1.8e+04      28      47 ..     549     569 ..     541     576 .. 0.47
   9 !   17.2  33.3   1.1e-06    0.0064       1     121 [.     577     707 ..     575     717 .. 0.59
  10 ?  -21.7  37.1         3   1.8e+04      83     135 ..     699     754 ..     682     786 .. 0.40
  11 ?   -1.8   8.3      0.75   4.5e+03      26      65 ..     804     847 ..     778     860 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.72
     DUF3824 29 rrerkkaerererrreedeardsyeeeyepepysp 63
                + er +  +  er   +d++r+ y+ +   +pysp
  CCE28891.1 30 HSERFERVERTERVDVDDDRRSRYSGR---APYSP 61
                333332222233333444445555444...35555 PP

  == domain 2  score: -10.9 bits;  conditional E-value: 3
     DUF3824  29 rrerkkaerererrreede.ardsyeeeyepepyspsPeassqPsasqesyyPetnyFPPPPgs..tpkpsveeepeaaiapynPad 112
                   +r  + r r+ r  e+   ++  ee++++ + +   +  ++  +++e+y P++    PPP++    ++s+e++    ++p  Pa+
  CCE28891.1  81 ETDREWERRPRHGRPAEEMrVETRTEERFDDGHHHGHGHDVERYRKETEYYLPQS----PPPAPviIRQKSAEPQRIFLQEP-APAP 162
                 3333333444555555555344566666765555554444455555555455774....66666223333333333333333.4444 PP

  == domain 3  score: -13.4 bits;  conditional E-value: 3
     DUF3824  32 rkka.....ererer..rreede..ardsyeeeyepepyspsPe..assqPsa 73 
                 r++      +rer++   r++++  ++d y+++ ++ +y  +     s++P++
  CCE28891.1 202 RREVghhrgDRERDYalARYDHRprRHDDYHSDDDDYHYRRTVRreRSESPHH 254
                 33333334444443311567776533466666666777777665445555655 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.3
     DUF3824   7 rdlAeaalaaggaglAahey 26 
                 + lA aal+a g  +A +  
  CCE28891.1 289 KVLAGAALGALGTEVARRAH 308
                 55788888887777775544 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.0055
     DUF3824   7 rdlAeaalaaggaglAaheyakrrerkkaerererrreedeardsy 52 
                 ++lA  a+a ++ag A    +++ ++ +a r r+r r  ++ +d++
  CCE28891.1 331 KGLAFGAVALAAAGAAQYFQSNKIDKEEAHRGRSRTRGYHSGDDYS 376
                 5677777766666666666668889999999999998888766655 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.0044
     DUF3824   1 rsrsrsrdlAeaalaaggaglAaheyakrrerkka...ererer 41 
                 rs+sr r++ +aa aa g +  a  +++ r+++++    ++r+r
  CCE28891.1 387 RSKSRRRSISTAAKAALGTAATAGIINHLRKKSRSkssGKSRSR 430
                 78999888866666555544444444433333332111455544 PP

  == domain 7  score: 22.9 bits;  conditional E-value: 1.8e-08
     DUF3824   1 rsrsrsrdlAeaalaaggaglAaheyakrrerkkaerererrreedeard 50 
                 rs+sr r +Ae + +a++ag+A + ++ ++++k+  r+r+    +d++  
  CCE28891.1 430 RSKSRLRRVAEIGGVAAAAGVANKLWKSHNDKKERARSRSVGGVDDDN-Y 478
                 89*******************************988888777777762.2 PP

  == domain 8  score: -5.0 bits;  conditional E-value: 3
     DUF3824  28 krrerkka.erererrreede 47 
                 +rrer++   r+r+ + ++ +
  CCE28891.1 549 RRRERRRRsRRDRSFSDYDSN 569
                 344444421233333333332 PP

  == domain 9  score: 17.2 bits;  conditional E-value: 1.1e-06
     DUF3824   1 rsrsrsrdlAeaalaaggaglAaheyakrrerkka...erererrreedear...dsyeeeyepepyspsPeassqPsasqesyyPetnyFPPPPgs.. 91 
                 rs+sr rd+A+a++    a++++++++ r +rk +   +   +r+r +d++r     + ++y     ++ P + s P+as   yyP    +PP Pg   
  CCE28891.1 577 RSKSRLRDMAAAGA----AAIGIKDFKDRHDRKGKdrrDSRSSRSRDDDDRRhheGASRRDY---FDDAGPRPHSPPTASGGAYYPP---YPPTPGDhp 665
                 79999999987666....88999999999999988443222233444444331223344444...333344445669********97...999999877 PP

     DUF3824  92 .......tpk...psveeepeaaiapynPadYppp...Pgaap 121
                        tp    +  ++   a+ +py P+dY +    P + p
  CCE28891.1 666 masganyTPYpggQGGRSMSGAEFQPYVPQDYTGYappPPP-P 707
                 77766652223333345566678899****97654210222.2 PP

  == domain 10  score: -21.7 bits;  conditional E-value: 3
     DUF3824  83 nyFPPPPgstpkpsveeepeaaiapynPadYpppPgaa.ppeqeyqy.pP.....epged 135
                  y PPPP + p+    + p  + a +  adYpp+P a+ p  ++    pP      p++d
  CCE28891.1 699 GYAPPPPPP-PA---GPPPMPSEAGFRLADYPPGPPATsPGPSPPPAgPPptgghRPPPD 754
                 223333333.22...122323333345555555533331222221222221222222222 PP

  == domain 11  score: -1.8 bits;  conditional E-value: 0.75
     DUF3824  26 ya.krrerkka...erererrreedeardsyeeeyepepyspsP 65 
                 ++ +rr + +a   +  r ++  +de++d+++++++++p ++s 
  CCE28891.1 804 MErHRRAQAEAseeDATRPQNDWDDEHNDYSTDNRDKRPDPKSS 847
                 44377777777422333334445667889999999666666554 PP

>> DUF3759  Protein of unknown function (DUF3759)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3     0.039   2.3e+02      41      78 ..     322     363 ..     290     371 .. 0.69
   2 ?   -0.7   0.1      0.25   1.5e+03      22      39 ..     445     462 ..     399     470 .. 0.83
   3 ?    7.6   0.1   0.00063       3.7      10      43 ..     576     609 ..     566     614 .. 0.73
   4 ?   -3.8   0.0       2.3   1.4e+04      53      66 ..     919     932 ..     918     932 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.039
     DUF3759  41 kpvshafaKellA....gfagaevdklvetkgldeidrekak 78 
                  p++h+  K+ lA    ++a+a + + +++ ++d+ + ++ +
  CCE28891.1 322 SPDHHHLLKKGLAfgavALAAAGAAQYFQSNKIDKEEAHRGR 363
                 478899999988875556666666777776666665555554 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.25
     DUF3759  22 gAAafeAvkayedhqrke 39 
                 +AAa  A k+++ h  k+
  CCE28891.1 445 AAAAGVANKLWKSHNDKK 462
                 466677899999998776 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00063
     DUF3759  10 ehkaklshellagAAafeAvkayedhqrkeGkpv 43 
                 +++ +   ++ a++Aa  ++k ++d+  ++Gk+ 
  CCE28891.1 576 KRSKSRLRDMAAAGAAAIGIKDFKDRHDRKGKDR 609
                 234444467888888889*************986 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 2.3
     DUF3759  53 Agfagaevdklvet 66 
                 +g  g+ +d+lve+
  CCE28891.1 919 SGTDGEAIDRLVEK 932
                 678899******96 PP

>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   5.0      0.29   1.8e+03       4      49 ..     260     312 ..     257     409 .. 0.66
   2 ?    8.8   0.3   0.00018       1.1      21      59 ..     431     469 ..     400     511 .. 0.69
   3 ?   -3.3   0.0      0.95   5.7e+03      22      55 ..     575     608 ..     571     626 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.29
      DUF533   4 ggaaaggllglllGskk......grklgkkalklGglAalGg.lAykayqnwq 49 
                 +ga+ag+ +++llGs++       ++ g+k+l++++l alG+ +A +a +++ 
  CCE28891.1 260 EGALAGAGISALLGSRRdaygdlPENRGRKVLAGAALGALGTeVARRAHSAYG 312
                 57777777888888888555443225555666666666665423444444432 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00018
      DUF533  21 grklgkkalklGglAalGglAykayqnwqanqqeaapqs 59 
                 +++  ++++++Gg+Aa +g+A k ++++++++++a+++s
  CCE28891.1 431 SKSRLRRVAEIGGVAAAAGVANKLWKSHNDKKERARSRS 469
                 3356678999****************8877776444433 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.95
      DUF533  22 rklgkkalklGglAalGglAykayqnwqanqqea 55 
                 rk +k+ l+  ++A  +++ +k +++ ++ + ++
  CCE28891.1 575 RKRSKSRLRDMAAAGAAAIGIKDFKDRHDRKGKD 608
                 5556666666666666777777777655555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.22s 00:00:01.04 Elapsed: 00:00:00.40
# Mc/sec: 7355.18
//
Query:       CCE28892.1  [L=763]
Description: probable beta-glucosidase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-41  142.3   0.1    5.5e-41  140.8   0.0    1.9  2  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    4.2e-34  118.4   0.2    9.6e-34  117.2   0.2    1.5  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    1.4e-19   69.9   0.8    2.7e-19   69.1   0.1    1.9  2  Fn3-like         Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       1.5   8.7e+03     110     143 ..     292     323 ..     288     328 .. 0.71
   2 !  140.8   0.0   9.2e-45   5.5e-41       2     204 .]     370     631 ..     369     631 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.5
                      HTTSSEEEEEEESSGG--TTTGTTTEEEEEE-S- CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 110 aanknvvvvlqsggpvavepwkeenvkAilaawl 143
                         kn +  +q+g+  +  ++  + v+ i+aaw+
       CCE28892.1 292 TWDKNLIQAVQNGSFAES-RV-TDMVTRIIAAWY 323
                      556788888888888877.45.458999999997 PP

  == domain 2  score: 140.8 bits;  conditional E-value: 9.2e-45
                      EEEEEGSS--S-S-STEEEEEESGGGS.....................................SS-SS-BSSS----S---HHHHHHHHHHH. CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxx.....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C   2 VLLkNennlLPLkkklkkiaviGpnad.....................................etlklGggsgtvtvsylvsplegirerles 58 
                      VL+kNe+n+LPL ++ k++ ++G +a+                                     +tl++Gggsg+vt+ ++ sp +++ ++++ 
       CCE28892.1 370 VLVKNERNALPL-RNPKTVSIFGYSANtapkwsaaedtppgswnvglapvqgvnnfkttaigpnGTLYSGGGSGAVTPATFSSPQDALVAKAAR 462
                      9***********.55579************************************************************************9977 PP

                      .......-HHHHHHHHHHHTSEEEEEEEES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTT.GTTTEEEEEE-S--G CS
                      ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  59 ......eegideaveaakeaDvavvvvgedpeiegEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpvavepw.keenvkAilaawlpG 145
                            ++  +    +  + ++++v+ +++   ++Eg Dr+dl+ +   d+lik++a ++ n++vvl+++g  +v+ + +++nv+A+l a+lpG
       CCE28892.1 463 dgftlhQDLGSSEPVVKPSPEACIVFGNAW---SAEGTDRPDLQDD-YTDTLIKRIAGQCANTIVVLHNAGIRTVDGFvDHPNVTALLFAHLPG 552
                      9****96666666668999***********...*********9999.********************************999************ PP

                      CCHHHHHHHHHTTSS---B--SS-EESSSGGG...........................S.-----S...ETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx..xx............xx.xxxxxx...xxxxxxxxx RF
  Glyco_hydro_3_C 146 qegGtaiadvLfGdvnPsGkLpvtfpksledlpd..dyyeek..dt............yk.fegtpl...YpeGlglsY 204
                      +++G+a++ +L Gd nPsGkLp+t+++s +d+    + +++   ++            yk fe +++   Y++G+glsY
       CCE28892.1 553 ENSGEALVSLLWGDSNPSGKLPYTVAHSPADYGAllNPHTQGgsRNpqadytagiymdYKyFEANNIqprYEFGFGLSY 631
                      ******************************9944443333334322456667888888666666666777999999999 PP

>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.2   1.6e-37   9.6e-34      65     317 ..      79     319 ..      74     321 .. 0.90

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 1.6e-37
                    .S--EEEE---BTTB---SSS.---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B-----STTSS.SGGGSS-SSHHHHHHHHHHHHH CS
  Glyco_hydro_3  65 giPlllavDqegGlvqrlgeg.tlfPsalalaatssldlikelgriiakelralgididfaPvvdvnrdprng.igvrsFsedpelvaalaaamvk 158
                      P l+ +D+ +Gl+    ++   f s +  +a+++++l+ + g +++ e    g+++ ++Pvv  +    +g ++ ++ s+d++l + +aa++v 
     CCE28892.1  79 NFPGLCLSDAGQGLR--ATDKvSGFASGIHVGASWNKNLALDRGAAMGGEFKRKGVNVLLGPVVGPAWSVVKGgRNWEGASADVYLSGVMAAQTVL 172
                    567777788877777..4555599*******************************************9999999********************** PP

                    HHHHTT-EEEEEEETTGTT-SSET...TTSEEB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEE CS
  Glyco_hydro_3 159 GlqgagvaatvKHFpghGdgavds...hkelptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvv 251
                    G+q+a+v+++ KH++g  + ++ s   ++  + ++++ ++l+ev l pfq a++ag  sVM +   ++ ++ t + +s k+  + L+ elGF G+v
     CCE28892.1 173 GVQSANVMTSTKHYIGNEQESQRSpsgDTASVSTNIDDKALHEVFLWPFQDAVRAGSASVMCS---YQRVNQTYTCASDKAQNGALKGELGFRGFV 265
                    ****************976666552224556788999**************************...********999******************* PP

                    EES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHHHH CS
  Glyco_hydro_3 252 vsDalamkeiadrggkeeavvlaLkAGvDilLvpeertseikalkkavkeGeltearidesvrrvl 317
                    vsD+      a +gg e a       G+D+ +  ++ +   k+l++av++G+ +e+r+ + v+r++
     CCE28892.1 266 VSDWG-----ALYGGLEYA-----TGGLDMGMPNAATW--DKNLIQAVQNGSFAESRVTDMVTRII 319
                    *****.....445555544.....57*********999..89***********************8 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.6   9.7e+03      50      67 ..      30      47 ..      29      49 .. 0.84
   2 !   69.1   0.1   4.5e-23   2.7e-19       1      71 []     686     752 ..     686     752 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.6
                ETTTTEEE--SCEEEEEE CS
    Fn3-like 50 deekqkwvvepGeytvlv 67
                d+++++w v  G+ + +v
  CCE28892.1 30 DVTANDWAVSYGKAQAMV 47
                788999*99999988887 PP

  == domain 2  score: 69.1 bits;  conditional E-value: 4.5e-23
                 EEEEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESSS CS
    Fn3-like   1 evvqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgtss 71 
                 e +qlYv+ p       +k+L+gF+k +L+ Ge+++v+f+l+r+dlsvwd+ +qkw +++G+y+v+vg+ss
  CCE28892.1 686 EAAQLYVRIPGI----KAKQLRGFTKEFLKVGEKARVSFSLTRRDLSVWDTGAQKWLLQKGRYEVFVGASS 752
                 789*******97....69***************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 5328.54
//
Query:       CCE28893.1  [L=1297]
Description: related to non-ribosomal peptide synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-64  216.8   0.1    3.5e-62  210.4   0.1    2.2  1  AMP-binding    AMP-binding enzyme
    1.4e-10   41.3   0.0    4.7e-10   39.7   0.0    1.9  2  PP-binding     Phosphopantetheine attachment site
    4.8e-08   32.4   3.8      0.057   13.2   0.1    5.3  5  Hexapep        Bacterial transferase hexapeptide (six repeats
  ------ inclusion threshold ------
      0.015   16.3   0.1      0.057   14.4   0.0    2.1  2  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.4   0.1   7.8e-66   3.5e-62       4     422 ..      31     400 ..      28     401 .. 0.86

  Alignments for each domain:
  == domain 1  score: 210.4 bits;  conditional E-value: 7.8e-66
                  HHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEE.SSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEE CS
  AMP-binding   4 qaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaill.pnspewvvallailkaGavvvplnptltaeelayiledseakvlia 100
                  +  ++p++ a+ +  +  +lTY el  ++    + Lr++Gv  gdr++i +   s+e+++++la+l aGa++vp++ + + e+ + + e++ +++++ 
   CCE28893.1  31 TTTTHPKALAIDN--GTDRLTYTELATQIAHRVKQLRAAGVCAGDRIGIRVtSGSLELYISILAVLTAGAAYVPVDVDDPDERAQLVWEEASVTAVF- 125
                  5678999999955..99********************99**********661679******************************************. PP

                  TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH..HHHC CS
  AMP-binding 101 tvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk..letr 196
                   +d++                  +++         ++++    +         +++  +d a ii+TSG+TGkPKGV +shr+++a+v + +  + + 
   CCE28893.1 126 -TDNAT----------------LTCVN--------PSNGGG--D---------RRPGLEDDAWIIFTSGSTGKPKGVAVSHRSAAAFVDAESkiFLPS 187
                  .53322................23333........122222..1.........13456788**************************99954653333 PP

                  SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS- CS
  AMP-binding 197 fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggep 294
                    l ++d+vl+ l++a+++++  e++la   Ga++v +p+      + l  ++++ +++v+ +vP+++ ++ ++           l++lrl++lgge+
   CCE28893.1 188 KPLAPGDRVLAGLSVAFDASC-EEMWLAWRYGACLVPAPRALVKAGADLGTFLTAQHISVVSTVPTLAAMWPAE----------ALKGLRLLILGGEA 274
                  55778***************8.*************999977667788999*********************885..........6889********** PP

                  EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE. CS
  AMP-binding 295 lspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafds. 391
                  ++pel+ ++ +++g  v+++YG+TE+t+v++ +pl     ++  +G pl+g ++++vD e g+ v+ geeGel+++g g+++ Yl   e+ a +f + 
   CCE28893.1 275 CPPELAARLANTVGS-VWNTYGPTEATVVACAAPLVAG--QPVAIGLPLAGWKLAVVDTE-GNAVKWGEEGELVIGGVGMAR-YLDV-EKDAVKFAPa 366
                  *************98.**************96565555..4557***************9.*****************8776.9965.9999999878 PP

                  ....TCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 392 ....egrwlrTGDlgrldedGyleivgRkkdlikl 422
                      ++r +r+GDl+r +++  l++vgR +++ikl
   CCE28893.1 367 acfgGERAYRSGDLVRAEKE-GLFFVGRNDEQIKL 400
                  8985357*********9955.69***********8 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0     1e-13   4.7e-10       2      64 ..     507     565 ..     506     568 .. 0.93
   2 ?   -2.6   0.0       1.6   7.4e+03      32      61 ..     925     954 ..     924     958 .. 0.82

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1e-13
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaela 64 
                 +l e +++v+gvp+   +pd+++fd G+ Sl+a++l+++l+++   +++++d++e+p l+++a
  CCE28893.1 507 WLAEQWRRVIGVPA---APDSNFFDIGGTSLAAAQLVSQLRQR-APTMSVADIYEYPILSAMA 565
                 8999********95...57************************.9************999887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.6
  PP-binding  32 llavellaaleeefgveiplsdlfehptla 61 
                 ll+ ++l++l ++ g  ++ s++++ p+l 
  CCE28893.1 925 LLTPTWLRMLGARIGKHVEASTILAIPSLL 954
                 55557899999999*********9999985 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.37   1.7e+03       2      12 ..     711     721 ..     710     741 .. 0.49
   2 !   13.2   0.1   1.3e-05     0.057       3      36 .]     759     792 ..     757     792 .. 0.95
   3 ?    0.1   0.1      0.17   7.6e+02       3      17 ..     984    1004 ..     982    1010 .. 0.64
   4 !    4.8   0.0    0.0054        24       2      28 ..    1174    1207 ..    1173    1210 .. 0.73
   5 !   10.1   0.0   0.00012      0.52       2      34 ..    1222    1254 ..    1221    1256 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.37
                 EEEETTEEE-T CS
     Hexapep   2 tvIGsnvlIgp 12 
                 +++G++v+++ 
  CCE28893.1 711 CHVGKDVQLHG 721
                 44444444444 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.3e-05
                 EEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   3 vIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 ++G+++++g+ + +++++ I ++++++ g+v+ g
  CCE28893.1 759 TVGEGAVVGHRSFLMPGAAIEPYATVEGGTVVEG 792
                 79*****************************975 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.17
                  EEETTEEE-T......TEEEE CS
     Hexapep    3 vIGsnvlIgp......favig 17  
                   +G+++++g+      ++++ 
  CCE28893.1  984 SVGEKAFVGNsgiveaGVHVP 1004
                  689999999865555566555 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0054
                  EEEETTEEE-T.......TEEEETTEEE-TTEEE CS
     Hexapep    2 tvIGsnvlIgp.......faviggnVkIGdnvkI 28  
                  ++IG +v++++        + ig+++++ +++++
  CCE28893.1 1174 AKIGHGVWLDShhlpeaeLCEIGDGATVNRRAVL 1207
                  7888888888888887777777777777777665 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00012
                  EEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep    2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34  
                  +v++ ++++gp ++ ++ ++IG +++I++ + +
  CCE28893.1 1222 VVLHAGATLGPRSIALPATVIGAGTTIAPSSLV 1254
                  68899***********************98865 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.3e-05     0.057       1      76 []     409     480 ..     409     480 .. 0.69
   2 ?   -3.0   0.0       3.4   1.5e+04       3      21 ..     987    1004 ..     987    1010 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
                    HHHHHHHSSTTEEEEEEE-----TTS.---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkG.ealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+ +al+s p+V+ aa    + e +G ++lv++Vv  + +   +++ +  +r+ l++   p  v  vd lp  +sGK
     CCE28893.1 409 EIDAALMSLPGVNAAATTIRRSE-TGnQVLVGYVVRTAAP---QANDRGILRRLLPATLIPMLVT-VDHLPVRTSGK 480
                    89**************9966666.666********84332...2444555555566655554443.77777777776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.4
                     HHHHHSSTTEEEEEEE--- CS
  AMP-binding_C    3 EsalvshpaVaeaaVvGvp 21  
                     E a v   ++ ea+V+ vp
     CCE28893.1  987 EKAFVGNSGIVEAGVH-VP 1004
                     7899999********9.65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 8881.93
//
Query:       CCE28894.1  [L=276]
Description: uncharacterized protein CPUR_02584 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-14   54.5   0.0    1.1e-09   37.9   0.1    2.1  2  BPL_N     Biotin-protein ligase, N terminal
  ------ inclusion threshold ------
       0.17   11.5   0.0       0.26   10.8   0.0    1.2  1  GATase_3  CobB/CobQ-like glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> BPL_N  Biotin-protein ligase, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   1.2e-13   1.1e-09      51      98 ..      63     110 ..      14     125 .. 0.80
   2 !   14.7   0.0   1.4e-06     0.012     162     224 ..     162     215 ..     134     230 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1.2e-13
       BPL_N  51 allVlPgGaDlpYvrelngegnrkikeyVekGGkylGlCAGaYygskr 98 
                  l   PgG Dl Y  e +++ +  ++e+V++GG+ylG+C GaY + ++
  CCE28894.1  63 ELYAQPGGPDLDYAWEQTKSYTPALREFVSRGGRYLGFCLGAYLAGHS 110
                 56677**************************************99765 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.4e-06
       BPL_N 162 iyynGggvFvdaeklknkvevLArYaeeldvdsgeakkaAvvlckvgeGkalLtgvhpEfala 224
                 +++  g+v++d  ++++   vLArY+++        +++A  l k+geG + L+g+hpE +  
  CCE28894.1 162 VFFQEGAVITDFVDTED-TIVLARYSKS--------GRVASSLSKYGEGWVGLIGPHPEAPED 215
                 56666889999999999.99******96........55899999***************8764 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.9e-05      0.26      29      85 ..      51     104 ..      42     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.9e-05
    GATase_3  29 fvplkdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGl 85 
                  v++++esl++ ++l+  pGg d   d a+++ ++   a++e++++gg+ lg C G 
  CCE28894.1  51 AVDVTRESLAS-VELYAQPGGPDL--DYAWEQTKSYTPALREFVSRGGRYLGFCLGA 104
                 57778999966.*********996..8899************************775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2085.60
//
Query:       CCE28895.1  [L=475]
Description: uncharacterized protein CPUR_02585 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.5   0.0       0.32   11.5   0.0    1.5  1  HSCB_C    HSCB C-terminal oligomerisation domain


Domain annotation for each model (and alignments):
>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.8e-05      0.32      24      75 ..     342     395 ..     333     396 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.8e-05
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HH...HHHHHHHHHHHHHHHHHHH CS
      HSCB_C  24 dkeeleelkaeveerieeleaeleeafekkdle...aaadllrrlrYlekikeei 75 
                  +e+l+e ++ev++  +++++ l++a ek + e        ++rl+Y++ ++e +
  CCE28895.1 342 APEKLNETHEEVRTTAAAITNPLSRAAEK-EDEgalSSDTWTSRLKYWQTLRETV 395
                 469***********************955.555122334569*********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3467.66
//
Query:       CCE28896.1  [L=571]
Description: probable DHA14-like major facilitator; ABC transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-42  145.1  49.3    2.7e-42  145.0  45.4    2.6  2  MFS_1     Major Facilitator Superfamily
    2.6e-13   49.3  20.4      4e-13   48.7  20.4    1.2  1  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
        6.8    4.7   7.3         11    4.0   7.3    1.4  1  UPF0182   Uncharacterised protein family (UPF0182)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0  45.4   4.4e-46   2.7e-42       1     351 [.      59     477 ..      59     479 .. 0.85
   2 ?   -0.9   0.1       0.1   6.2e+02     226     268 ..     520     560 ..     495     570 .. 0.71

  Alignments for each domain:
  == domain 1  score: 145.0 bits;  conditional E-value: 4.4e-46
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+l++f++al+ +i+++a+p  +++++  +   +g+  ++y l++++ +l++G l + ++ ++v+l+g++lf +g+l++  ++++  l+++r+++Glg+
  CCE28896.1  59 LCLSVFCMALDNTIIATAIP-RITDQFK-ALEDVGWYGSAYLLTTCAVQLIFGKLYTFYSVKWVYLCGIFLFEIGSLVCGATPNSVGLILGRAVAGLGG 155
                 6899****************.*******.9999******************************************666663466669************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 +++f++++ +i   +p ++r++++g+++++++++++ gpl gg+++++l Wr++fyi+ +++++ +++++++l  ++p++ +  +++++          
  CCE28896.1 156 AGIFSGALLIINISVPLRQRPMYMGIIGSMYGIASVAGPLMGGAFTDHLTWRWCFYINLPFGAVTVLFIMAFLKLPAPKKLPIQGVQDKqqednkgdrk 254
                 *****************************************************************999999**9999999999999999********** PP

       MFS_1 189 ..............................................................kgtgpaplvpawkallkdpvlw.illialllfffgfs 224
                                                                               ++ ++++ vp    ++ ++ +w ++++a++l+ ++f+
  CCE28896.1 255 rlglleqlqsfdllgtflfipgvvclllalqwggtkyawndgriialfvlfamliagfvavqVWLQEKATVP--PRVFLNRTVWtCAVFAACLG-AAFF 350
                 **************************************************9999999999986666666666..45555555896444444444.4999 PP

       MFS_1 225 glltllplylqevlglsglllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalglallavtssavllll...vlvliGfglgfvfp 319
                  ++++lp+++q v g s ++++g+    + l  +++++++g l++ lg   +++l++ +l++++a +l  lav +s++++++   +l+ iG+glg+ ++
  CCE28896.1 351 VMVYYLPIWFQAVQGTS-AIESGIKNLPMILSLVVFSIVSGGLVTTLGQyAPFMLISTVLMSVGAGMLSTLAV-ESPPAHWIgyqLLFGIGVGLGMQQT 447
                 9****************.56666333333333333488******99998344555555555555555555555.5999999977666669999999999 PP

       MFS_1 320 sllalasdlappeeagtasglfntagslggal 351
                 +++++as        +  ++++ + ++lggal
  CCE28896.1 448 MVAVQASLEG--ADVAIGTAIVIFSQTLGGAL 477
                 9999999998..66666666666667777766 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.1
       MFS_1 226 lltllplylqevlglsglllaglllallalvgailallagrls 268
                 +  +lp+   e ++ + + ++ ++++++a+++++++ l+ + s
  CCE28896.1 520 ADEYLPVV-LEAYNGA-VTSTCYVSSAMAALSIVGSALVPWNS 560
                 56688885.8888888.77777777777777777776666644 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7  20.4   6.7e-17     4e-13      17     486 ..      27     507 ..      15     559 .. 0.76

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 6.7e-17
       TRI12  17 ddrlrakalatsadelpegyyrsprvvasfaafslnvvatyfvlqasasalpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilth 115
                  d++ra+ l  s     e y  s r+     a+ l v +  +     a+a+p i ++    e+ + + + + +  +   l++g+l   +  + + +   
  CCE28896.1  27 TDQVRADDLPESLPAADEEYPESWRLGLITIALCLSVFCMALDNTIIATAIPRITDQFKALEDVGWYGSAYLLTTCAVQLIFGKLYTFYSVKWVYLCGI 125
                 58899999999999999999999999988999999999999999999********************9999988888899*****99888877666666 PP

       TRI12 116 ilglvgaiv.gctatkfntlla.amtllgvaagpagasplf.vgelmsnktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavl 211
                  l  +g++v g+t + +  +l  a++ lg a   +ga  ++ +   + ++  ++g+ i s+  ++   ++p +g  ++   +wrw fyi +   a++vl
  CCE28896.1 126 FLFEIGSLVcGATPNSVGLILGrAVAGLGGAGIFSGALLIInISVPLRQRPMYMGI-IGSMYGIASV-AGPLMGGAFTDHLTWRWCFYINLPFGAVTVL 222
                 67778887636666766655532555566555455543322133345566677775.4566666655.9****************************** PP

       TRI12 212 livvwyyppsfaql...........hgkkvrkr....eelakldwigiilvivgvslfllgvswggkpnspwnsakviglissglgslvvfalyevygk 295
                 +i+ +   p+ ++l             k  rkr    e+l   d +g +l i gv  +ll + wgg     wn  ++i l+   +  +  f   +v+ +
  CCE28896.1 223 FIMAFLKLPAPKKLpiqgvqdkqqeDNKGDRKRlgllEQLQSFDLLGTFLFIPGVVCLLLALQWGGTK-YAWNDGRIIALFVLFAMLIAGFVAVQVWLQ 320
                 *****99887665522211111111233345655555678899***********************75.68**********999988888999999975 PP

       TRI12 296 pvrpivppalfkdtrgfvcillissimgamnlslviiypqqvvnifgsslknweetawmsatasfgtgagvvvlgslfhlvrhirwqilvgalwltafl 394
                  ++  vpp +f +   + c +  ++ +ga  + +v   p     + g+s  +       +    +      +v g l+  + +    +l+ ++ ++   
  CCE28896.1 321 -EKATVPPRVFLNRTVWTCAV-FAACLGAAFFVMVYYLPIWFQAVQGTSAIES---GIKNLPMILSLVVFSIVSGGLVTTLGQYAPFMLISTVLMSVGA 414
                 .7899*******999999976.5678899999999988988888888775432...2222222223333345566666666666777888899999999 PP

       TRI12 395 gamssvnrdnkna.aialsvlsgfvvawaqditmllvqfittdedlgvafavvaaarpfagsiftaafislysnrypkelashlssalrgtdi 486
                 g +s++  +   a  i   +l g+ v+   + tm+ vq      d+ +  a+v  ++ + g++f +    ++ n+   ++a+   + l  +++
  CCE28896.1 415 GMLSTLAVESPPAhWIGYQLLFGIGVGLGMQQTMVAVQASLEGADVAIGTAIVIFSQTLGGALFICVAQNIFQNKLVANIAAANVAGLDASSV 507
                 99999998877652699**************************************************9******9999999877766665554 PP

>> UPF0182  Uncharacterised protein family (UPF0182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   7.3    0.0019        11       7     117 ..     298     456 ..     296     552 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0019
     UPF0182   7 vlavlllllellarlytellwfkelg..ylsvfltrlltrlllfvvvflllalllllnlllaerl.................................. 69 
                 ++a+++l+++l+a +++  +w +e      +vfl+r ++ +++f++ + +++++++ +l +  ++                                  
  CCE28896.1 298 IIALFVLFAMLIAGFVAVQVWLQEKAtvPPRVFLNRTVWTCAVFAACLGAAFFVMVYYLPIWFQAvqgtsaiesgiknlpmilslvvfsivsgglvttl 396
                 566777778888999999999988773346899999999999999988888777777776666653345555555555555555555444444444444 PP

     UPF0182  70 .......ell......eklerlrealekklkllllaialvlsllvglvassqwekvllfln 117
                          +           l+++  +++    ++ +l++++ vgl +++++  v+  l+
  CCE28896.1 397 gqyapfmL-IstvlmsVGAGMLSTLAVESPPAHWIGYQLLFGIGVGLGMQQTMVAVQASLE 456
                 44333330.0333333333344444455555555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3717.74
//
Query:       CCE28897.1  [L=447]
Description: related to salicylate 1-monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-14   53.3   0.6    4.8e-06   26.1   0.1    2.7  2  FAD_binding_3   FAD binding domain
    1.4e-06   28.4   0.8    3.8e-06   27.0   0.3    2.0  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    5.9e-06   25.7   0.3    0.00019   20.8   0.4    2.1  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    7.1e-06   25.4   1.3    1.1e-05   24.8   1.0    1.4  1  FAD_binding_2   FAD binding domain
    2.1e-05   24.3   3.5    0.00076   19.2   1.1    2.2  2  DAO             FAD dependent oxidoreductase
    0.00041   19.7   0.4      0.019   14.3   0.5    2.2  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
     0.0031   16.9   0.2     0.0067   15.8   0.1    1.6  2  Amino_oxidase   Flavin containing amine oxidoreductase
     0.0044   16.2   0.5     0.0069   15.5   0.5    1.3  1  GIDA            Glucose inhibited division protein A
     0.0048   17.4   0.1      0.013   16.0   0.1    1.7  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0077   15.0   0.5      0.011   14.5   0.5    1.2  1  HI0933_like     HI0933-like protein
  ------ inclusion threshold ------
      0.011   15.1   0.3      0.017   14.5   0.3    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
      0.082   12.2   0.5       0.13   11.5   0.5    1.2  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.083   12.1   0.2       0.12   11.6   0.2    1.2  1  Thi4            Thi4 family
      0.092   11.6   0.1       0.34    9.7   0.1    1.8  2  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   3.7e-09   4.8e-06       3      59 ..       3      59 ..       1      62 [. 0.96
   2 !   24.4   0.1   1.2e-08   1.6e-05     153     343 ..     151     368 ..     142     372 .. 0.60

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.7e-09
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-H CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGle 59
                   +V+I GaG aGl++a  L++aG +v++ ek s +++++ a ++ + +++ l   Gl+
     CCE28897.1  3 NVVISGAGIAGLSAAIALRRAGHDVHIYEKSSLNSETGAAIIIAPNSVRFLMAWGLD 59
                   799************************************************999985 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 1.2e-08
                    EEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEEEEEC-SCCCTTC............CEEEEECCTTEE..EEEECCE.TEEEEEEEEECC CS
  FAD_binding_3 153 vrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlfdadlsdivep............lvlilsaesrgv..mviPlen.tlerfyvqvear 233
                    +  + +++aDG +S+  +++ + ++ +  + + g     f  +++++ e+            ++ il++++r+      P ++ t  +f+ +++ +
     CCE28897.1 151 ICGDLVIAADGIHSAGPEAI-LGRKNTPVSAIRGNCCYRFLIPVERLEEDpdtqffvgnhhgWTRILADKDRVRrlVTYPCRDnTVLNFVGVLDEE 245
                    66678888888888643332.233333333334444444444444444444543333346665555566555546655566665777777777665 PP

                    E-GGGS....CCCHHHHHHHHHHHHH.....HTTSSCEE..EEEEEEEEEE.EEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHH CS
  FAD_binding_3 234 aekeer....sekfteeevkarlrei.....vgektldv..eieevsawtv.aqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawk 317
                    +e+ ++    ++++++ e +++++ +     +++  l+v  + ++v++w++  +r    ++kg + laGDAaH   P  GqG   a++D  +L+  
     CCE28897.1 246 DEDVKQdhgaTKRENWHEPIDIAQVLdkyagFDPRLLKVmsKGTNVRKWPLlYRRPLPAWNKGCMTLAGDAAHPILPHLGQGGAQALEDGLTLGII 341
                    55443334555556666655555544001112333334422335566777524566889***********************************99 PP

                    HHHHHTTSS-.GGGGHHHHHHHHHHHH CS
  FAD_binding_3 318 LaavlkGeAk.eelLdtYeeerravaq 343
                    +  + +  ++ +++L  Y + r+++a 
     CCE28897.1 342 FSGATSSPRDiQDRLALYFQARHKRAS 368
                    976665444337888888888888775 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.3     3e-09   3.8e-06       3      28 ..       8      33 ..       6      41 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 3e-09
                   --SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  3 GaGlsGlvaAylLakagfdvlllekr 28
                   GaG++Gl+aA +L++ag+dv+++ek+
     CCE28897.1  8 GAGIAGLSAAIALRRAGHDVHIYEKS 33
                   9***********************97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.4   1.5e-07   0.00019       2      30 ..       3      31 ..       2      47 .. 0.86
   2 ?    2.6   0.0     0.052        67     198     238 ..     125     163 ..     122     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.5e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve 30
                 +vv+ G+G+AGl+aa+ l++ag++v+++e
   CCE28897.1  3 NVVISGAGIAGLSAAIALRRAGHDVHIYE 31
                 6999************************6 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.052
                  EEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 198 vevklgtsvkeidgngeklevvledgeeidadlvvvavGvr 238
                  v +++g+ v   ++ +   + vle+g+ei  dlv+ a G+ 
   CCE28897.1 125 VVIHTGSGVRSYNPSKP--SIVLENGDEICGDLVIAADGIH 163
                  67899999999999888..89****************9975 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   1.0   8.3e-09   1.1e-05       2      37 ..       4      38 ..       3      51 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 8.3e-09
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   v++ G+G+AGL+AA+++++aG++v + ek +  +++
     CCE28897.1  4 VVISGAGIAGLSAAIALRRAGHDVHIYEKSSL-NSE 38
                   8999*************************986.444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.1   5.9e-07   0.00076       2      36 ..       4      38 ..       3      45 .. 0.85
   2 ?    5.2   0.0     0.011        13     121     224 ..      82     185 ..      48     295 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.9e-07
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36
                vvi G+Gi+Gls+A +L r+g  V ++ek+  +    
  CCE28897.1  4 VVISGAGIAGLSAAIALRRAGhdVHIYEKS-SLN-SE 38
                9999*************88899*******9.766.33 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.011
                 HHHHSTTST...TTS.EEEEETTEEEEEHHHHHHHHHHHHHHTT..-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH..HHHTT. CS
         DAO 121 vrelepalp...gll.galfypdtgqvdpakltaalaraaealG..veilegtevtgleeedgkvwgverttpgendaadavVnaaGawsd..llgll. 210
                 vr+l+   +   +++ g++ +  + +vd + +++++a +    G  v i++g+ v++  +++ k + v   ++g + + d v+ a G++s   +   + 
  CCE28897.1  82 VRQLS---DeksDTAmGGVPTWLSHRVDLHSALKWMATREDGPGrpVVIHTGSGVRSY-NPS-KPSIV--LENGDEICGDLVIAADGIHSAgpE--AIl 171
                 33333...13344443887788899999999999999995555555**********99.444.55666..444555567889999999986432..223 PP

                 CTTTSEEEEEEEEE CS
         DAO 211 keldlpispvrgqv 224
                 ++ + p+s++rg  
  CCE28897.1 172 GRKNTPVSAIRGNC 185
                 33357999999876 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.5   1.5e-05     0.019      30      61 ..       3      34 ..       2      46 .. 0.90
   2 ?    3.0   0.0     0.042        54      96     128 ..     370     402 ..     352     416 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrp 61
                 +v++ G+G+aGl+A+ + ++ g +V ++++++
   CCE28897.1  3 NVVISGAGIAGLSAAIALRRAGHDVHIYEKSS 34
                 599************************99875 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.042
                  EE---BTTSS---SC-HHHHHTS-TTEEEEETT CS
  AlaDh_PNT_C  96 igtvlipGkkaPkLvteemvksMkpgsVivDvA 128
                  +  +   G+  P Lv +e +++M p     D A
   CCE28897.1 370 VQIISNVGADQPSLVADELLQHMTPDELPTDFA 402
                  55556679****************987666665 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   5.2e-06    0.0067       1      23 [.      11      33 ..      11      35 .. 0.95
   2 ?   -3.4   0.0       3.4   4.4e+03     225     259 ..     127     159 ..     123     163 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.2e-06
                   HHHHHHHHHHHHTTEEEEEEESS CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEar 23
                   +aGL+aA  L +aG+dV ++E +
     CCE28897.1 11 IAGLSAAIALRRAGHDVHIYEKS 33
                   8********************87 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.4
                    EETSEEEEEEEEETTCEEEEETTSTEEEESEEEE- CS
  Amino_oxidase 225 irlntrVkeikregdgvtvtledgevveaDaVvvT 259
                    i++++ V++  +++++ ++ le+g+++ +D V+ +
     CCE28897.1 127 IHTGSGVRS--YNPSKPSIVLENGDEICGDLVIAA 159
                    555555554..56799999999****999999976 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.5   5.3e-06    0.0069       2      30 ..       4      32 ..       3      49 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.3e-06
                EEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLith 30
                v++ G+G AG+ AA+a+ r+G++v ++ +
  CCE28897.1  4 VVISGAGIAGLSAAIALRRAGHDVHIYEK 32
                8899********************99943 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     1e-05     0.013       1      31 [.       3      33 ..       3      37 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1e-05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvvers 31
                +vv+ G+G  gl +A al++ g++V++ e s
  CCE28897.1  3 NVVISGAGIAGLSAAIALRRAGHDVHIYEKS 33
                59************************98876 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.5   8.3e-06     0.011       2      32 ..       3      33 ..       2      46 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.3e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 +v++ G+G AGl aAi+++++g++V ++ek 
   CCE28897.1  3 NVVISGAGIAGLSAAIALRRAGHDVHIYEKS 33
                 69999************************96 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3   1.3e-05     0.017       2      31 ..       4      33 ..       3      35 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveer 31
                  vv+ G+g+aG+ AAia  raG  v + e++
    CCE28897.1  4 VVISGAGIAGLSAAIALRRAGHDVHIYEKS 33
                  9***********************999876 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5    0.0001      0.13       1      32 [.       5      35 ..       5      47 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgni 32
                 +I GaG aGl+aai+l++ag  d+ i Ek ++
   CCE28897.1  5 VISGAGIAGLSAAIALRRAGH-DVHIYEKSSL 35
                 688*****************9.899***9865 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   9.6e-05      0.12      19      50 ..       3      33 ..       1      42 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.6e-05
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailers 50
                +vvi GaG +GL+aa  l ++ +  v i e+s
  CCE28897.1  3 NVVISGAGIAGLSAAIALRRA-GHDVHIYEKS 33
                69****************999.8888888875 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00027      0.34       1      36 [.       3      35 ..       3      62 .. 0.86
   2 ?   -1.2   0.0      0.52   6.7e+02     190     221 ..     143     174 ..     139     181 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00027
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseei 36
                    ++vi G+G+aG  aA+al++a+   ++v + e++ +
      CCE28897.1  3 NVVISGAGIAGLSAAIALRRAG---HDVHIYEKSSL 35
                    69********************...77887777665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.52
                     EEETTS-EEE-SEEEE-SGGG-IIIIIIT--- CS
  Trp_halogenase 190 lrledgreveadlfiDcsGfrgllieqaLktg 221
                     + le+g e+ +dl+i + G  +   e  L  +
      CCE28897.1 143 IVLENGDEICGDLVIAADGIHSAGPEAILGRK 174
                     67999**************9998888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3138.17
//
Query:       CCE28898.1  [L=594]
Description: related to lincomycin-condensing protein lmbA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-147  491.3   0.0   3.9e-147  491.1   0.0    1.0  1  G_glu_transpept  Gamma-glutamyltranspeptidase
  ------ inclusion threshold ------
      0.055   13.7   0.0       0.11   12.8   0.0    1.4  1  BtrH_N           Butirosin biosynthesis protein H, N-terminal


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  491.1   0.0  4.3e-151  3.9e-147       2     512 .]      31     589 ..      30     589 .. 0.93

  Alignments for each domain:
  == domain 1  score: 491.1 bits;  conditional E-value: 4.3e-151
                      HHHHTT--HHHHHHHHHHHHHHHSTTT-STTSEEEEEEEETTSCEEEEEEE--BB-TT--TTTT........TSCBCCHHHHSSGGG-BB--HH CS
  G_glu_transpept   2 evLrkGGnAvDAavAaalclgvvepqssGiGGGgfllvydaktkkvealdaretAPaaatkdmf........dkegdsklsktgalavgVPGev 87 
                      ++Lr+GGnA+DAavA+a+ l+++ep+s+GiGG++f+l++da+tkkv+a++++++A+ ++t + +        +++++++++ t+a+av+VPG+ 
       CCE28898.1  31 DILRAGGNAADAAVAVAAGLNMTEPCSTGIGGDMFMLYWDAATKKVHAVNGSGRAGNKCTLEAVcegldipeNRRAHAEIPLTSAHAVTVPGAA 124
                      8**********************************************************************999******************** PP

                      HHHHHHHHHH-..SS-HHHHHHHHHHHHHH-EE--HHHHHHHHHCHHH.HHTSHHHHHHHEE......TTSE--TTSEE--HHHHHHHHHHHHH CS
  G_glu_transpept  88 agleeahkkyG..klpwadllepaiklareGfpvsealaralaeaeer.lkkdpelaklFlp......egevlkagellkqpalAktLerlaee 172
                      ag++++++ yG  +l+++++l+pai+l ++Gfpvse +a a++++e+r ++++p++ ++  +        ++++agel+k+p lA+t+++lae+
       CCE28898.1 125 AGWVDVVEVYGsgNLDMQRVLAPAIELGEKGFPVSEIVAHAWQASEARlRAASPNFGEMLKKdpraegGFRAPRAGELMKNPTLARTFRTLAEQ 218
                      ***********99***********************************888999******555555333345********************** PP

                      TTHHHHSSHHHHHHHHHHHHTT-S--HHHHHH--...-EEES-EEEEETT.........CEEEEE-TTCSHHHHHHHHHHHHCTTTGGGCTTTC CS
  G_glu_transpept 173 GaeaFYkGelAeklvaelqkagGiltaeDLanyk...vevreplsadyrg.........gytvyepppssggivllqiLnilegfdlkslssns 254
                      G++ FY+G++Ae+lv  +q  gG+l+++DL+++    +e ++p+s+ +rg         g +++e+pp+++giv+l++L i+e+++++ + +++
       CCE28898.1 219 GKKGFYTGRIAEELVHIVQFCGGLLELQDLEHHLqvgTEPVNPISLPFRGqgaasqeggGVRLWEHPPNGQGIVALLALGIIEHLEKQGAIPTF 312
                      *********************************8666689999*****889***********************************77777766 PP

                      .......HHHHHHHHHHHHHHHHHHHHH-SSTTTSSSGHCHHHHHT-HHHHHHHHTT.BTTB..SG.GGCSCGGCSCG...TTEEEEEEEEETT CS
  G_glu_transpept 255 .......aetlhllvEamklayadRsrylgDpdfvknptelveellskeyakeraklIkdkaatps.seyykaaeaaee..sggTthlsvvDre 338
                             a +lh ++Ea+kla++d +++++Dp+ v++p   ve lls+ey++erakl+++++a    + ++++  + +   s++T+++sv D++
       CCE28898.1 313 qpmdfnsAPYLHAIIEALKLAFSDGRWFIADPNVVDVP---VEGLLSDEYLAERAKLFDPTHAARVsPRHGNPPITSPAlsSSDTVYFSVTDAQ 403
                      7777888****************************988...*********************9986433333333333356************* PP

                      S-EEEEEEEESSTTTTSEBETTTTEBE--GGGGSBSTS..TTSCSTTSTTB--TT----B----EEEEE..TTEEEEEEEEESGGGHHHHHHHH CS
  G_glu_transpept 339 gnaVSltstinllFGsgvvvpgtGilLnnemddfstgvenafgldpspanaiePgkRplssmaPtivlk..dgkpvlvlGaaGGsriisavlqv 430
                      gna S++++++ +FG++++ +g+G++L+n++++fs        ld+ ++n i+P+kRp+++++P++v++  dg+    +G++GG +++++++qv
       CCE28898.1 404 GNAASFINSNYAGFGTSIIPRGCGFTLQNRGSNFS--------LDERHPNKIAPRKRPYHTIIPGMVTNlrDGSLHSSFGVMGGFMQPQGHVQV 489
                      ***********************************........**************************99999999***************** PP

                      HHHHHTT-S-HHHHHHS--EEE..SSSST........EEEESTTS.HHHHHHHHHTTSEEEESSSTCCCEEEEEEEE........TTTEEEEEE CS
  G_glu_transpept 431 lvnvldlgldlqeavdaprihh..qllpd........kvevEegfseevveeLearGhkvkevedsssvvaavavak........ekgvleaas 506
                      l+ +++  ld+q+a+dapr++     lp+        +v+vE+g+se+vve+L+++Ghkv++v+ + + v ++ ++         +++v++a+s
       CCE28898.1 490 LLGQIVGRLDPQQALDAPRVCItgGTLPEddgegvawTVNVEDGMSEDVVEGLRRLGHKVRVVKGQERHVFGRGQIIrrivdpveNTAVWSAGS 583
                      **********************997788889999999*************************9999887777777666799***99******** PP

                      -TTTTT CS
  G_glu_transpept 507 Dprkdg 512
                      D+r+dg
       CCE28898.1 584 DMRGDG 589
                      ***986 PP

>> BtrH_N  Butirosin biosynthesis protein H, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.2e-05      0.11       9      66 ..      43     101 ..      37     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
      BtrH_N   9 dllahaglelsEplvFglGgglgfvYlp.akklnplpllagrtkpgdlekrlakrlglk 66 
                  +  +agl+++Ep   g+Gg ++++Y++ a k+ + +  +gr  ++   + +++ l++ 
  CCE28898.1  43 AVAVAAGLNMTEPCSTGIGGDMFMLYWDaATKKVHAVNGSGRAGNKCTLEAVCEGLDIP 101
                 566689**********************6666667777788888888888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4236.76
//
Query:       CCE28899.1  [L=151]
Description: probable glutaredoxin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-16   59.9   0.0    3.3e-16   59.2   0.0    1.3  1  Glutaredoxin   Glutaredoxin
  ------ inclusion threshold ------
       0.12   13.1   2.5         21    6.0   1.7    2.2  2  Synthase_beta  ATP synthase F1 beta subunit


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   3.7e-20   3.3e-16       1      60 []      50     117 ..      50     117 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 3.7e-20
                   EEEEES.....TSSHHHHHHHHHHHHTTGG...EEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin   1 vvlftk.....ptCpyCkkakrlLkelgvk...feeidvdkdeeireelkelsgvrtvPqvfidgkhv 60 
                   vvlf+k     p+C++++ ++++L  +gv+   f+ ++v++d+e+re +ke+s+++t+Pq+++d ++v
    CCE28899.1  50 VVLFMKgtpemPQCGFSATVIKILGMQGVNpakFAAFNVLEDAELREGIKEYSDWPTIPQLYVDKEFV 117
                   89**************************76666********************************997 PP

>> Synthase_beta  ATP synthase F1 beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.7    0.0023        21       1      20 [.       1      20 [.       1      27 [. 0.79
   2 ?    5.9   0.0    0.0023        21       5      22 ..      31      48 ..      29      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0023
  Synthase_beta  1 MASRRlLSSLLRSSsrRsaa 20
                   M SR + S+LLR  +r  a+
     CCE28899.1  1 MFSRKIASTLLRQAARPAAS 20
                   88**********98876655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0023
  Synthase_beta  5 RlLSSLLRSSsrRsaaks 22
                   RlLSS  RS   R +a +
     CCE28899.1 31 RLLSSETRSAIDRAVASA 48
                   9*************9954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1195.02
//
Query:       CCE28900.1  [L=249]
Description: related to SIS2 protein (cycle-specific gene control) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-43  147.7   0.1    2.6e-43  147.5   0.1    1.1  1  Flavoprotein  Flavoprotein
  ------ inclusion threshold ------
       0.17   12.3   0.0       0.28   11.6   0.0    1.3  1  KH_9          FMRP KH0 domain


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   0.1   2.9e-47   2.6e-43       1     154 [.      32     231 ..      32     235 .. 0.92

  Alignments for each domain:
  == domain 1  score: 147.5 bits;  conditional E-value: 2.9e-47
                   EEEEEEE-SSCGGGCHHHHHHHHHH.TTEEEEEEESCHHHHCCHHGGS...............................TCSSHHHHHHCTTESEEE CS
  Flavoprotein   1 kkillgiTGsvaaikalellekLkk.egievqvvltkaAkkfiskeklklaa...........................redpilhielrrwadllv 69 
                   k++ll+++Gsva+ik++++++ L + ++ ++++vlt++A++f+  +  +  +                           r+ pilhielrrwa+ll+
    CCE28900.1  32 KHLLLAASGSVATIKIANIISGLAHhRNLSIRLVLTTSAEHFLGGQADE--QpsladvrrlpnvdgiytdaaewtrpwtRGTPILHIELRRWAHLLM 126
                   79***********************88*****************88333..13477899************************************** PP

                   EEEEEHHHHHHHHTT--SSHHHHHHHT........HCCTTEEEEE.--HHCCTCSTCHHHHHHH.HT...........................GHH CS
  Flavoprotein  70 iaPasantlakianGiadnlltlilra........takkpiliaPamnpamyenpqtlknlekl.eeg......vtvikPse.....gdigkgkmae 146
                   i+P+sant+ak+++Gi+dnll++++ra        +++k+i+ a amn+am++np t+k++++l e++      v v+ P++     +d+g+g+m e
    CCE28900.1 127 IVPLSANTMAKMVAGICDNLLLSVVRAwdhdgsvdGKRKKIVAAAAMNTAMWRNPLTAKHIKTLeEDWggeegwVRVLRPVAktlacNDVGEGAMVE 223
                   ********************************999999**************************8454566666*******779************* PP

                   HHHHHHHH CS
  Flavoprotein 147 ieeivgki 154
                   ++eiv+  
    CCE28900.1 224 WKEIVRVA 231
                   *****865 PP

>> KH_9  FMRP KH0 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.1e-05      0.28      27      81 ..      14      71 ..       3      73 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.1e-05
        KH_9 27 dfarnvgaas..vtyeaeknsllllsrkestikrasilsdm.ylrnlrqKllLlsrtE 81
                d +  + +++   +++ +k+ ll+ s + +tik a+i+s + + rnl+ +l+L    E
  CCE28900.1 14 DCQASTADIValARSDGKKHLLLAASGSVATIKIANIISGLaHHRNLSIRLVLTTSAE 71
                555554444411345566777888899************987**********987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1842.62
//
Query:       CCE28901.1  [L=384]
Description: uncharacterized protein CPUR_02591 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.06   13.6   2.2       0.16   12.2   0.1    2.7  3  ABC_tran_CTD  ABC transporter C-terminal domain
       0.24   10.9   1.6       0.36   10.4   1.6    1.4  1  Lin-8         Ras-mediated vulval-induction antagonist


Domain annotation for each model (and alignments):
>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.6   1.4e+04      22      30 ..     239     247 ..     228     257 .. 0.49
   2 ?   12.2   0.1   1.8e-05      0.16      30      64 ..     269     306 ..     266     308 .. 0.77
   3 ?   -0.8   0.1      0.21   1.8e+03      17      49 ..     352     365 ..     337     370 .. 0.41

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.6
  ABC_tran_CTD  22 eeiaeleae 30 
                   ++i++ +a+
    CCE28901.1 239 AKISAFHAQ 247
                   223333333 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.8e-05
  ABC_tran_CTD  30 eladpely.sdp..eklaelsaeleeleaeLeelyerW 64 
                    l++ e + s +    +  l+++l ++e+eL++l e+W
    CCE28901.1 269 TLCQSENFpSASlgRHMRTLHKRLSAAETELDRLNEEW 306
                   5666665544445455999******************* PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.21
  ABC_tran_CTD  17 IeaLEeeiaeleaeladpelysdpeklaelsae 49 
                     +                     e++ el +e
    CCE28901.1 352 VRKRG-------------------EEIDELDEE 365
                   33333...................333333333 PP

>> Lin-8  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.6     4e-05      0.36     140     231 ..      62     162 ..      47     264 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4e-05
       Lin-8 140 ddddiiyegyleaeegedteeeekveveeeaeeqgsmdl..keteaeevkeeqmeqsfe...eeeeakleeptv....niveeeaaaravdqsfgsaeq 229
                 d d+++++++   e++ d+ + ++++v+e++ +++++d+   e++a    +++ ++  +   +ee a++++p      n++++ea+a+av++  +s   
  CCE28901.1  62 DFDEMDFDEMDVDEMDVDEMDVDEMDVDEMDVDEMDVDVdeLESPAHYFHSYPATKHGSgflQEETARKDSPRImpppNYFAPEASATAVEKAHSSLRA 160
                 667777777644333333334444555555555555554005566666777777766668885555555555555555999999999998886654433 PP

       Lin-8 230 ql 231
                  l
  CCE28901.1 161 RL 162
                 33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2779.75
//
Query:       CCE28902.1  [L=405]
Description: probable branched-chain amino acids aminotransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-25   89.3   0.0    4.1e-25   88.9   0.0    1.2  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   2.3e-29   4.1e-25       2     223 .]     102     356 ..     101     356 .. 0.81

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 2.3e-29
  Aminotran_4   2 lfEtmrvy...ngei..ffldeHleRLrksaellglelpfdeeelrkileelleannsen.........grlrllvsrgggglgaatsepsvavyvsa 85 
                  +fE++++    +g++  f+ d++++R+r sa+++   + fd+ el+k++  ll+ ++ +          +++r+++++++++lg + +   ++ ++ +
   CCE28902.1 102 CFEGLKAFrghDGRLriFRPDRNCARMRMSAARI-SLPLFDAPELEKLMLALLAVDGPRWlprdrpgsfLYIRPTLIGTQSQLGVQAPREALLYIILT 198
                  89****8867744445499************999.67889***************999989*****99999*************66666666555666 PP

  Aminotran_4  86 lppgpeseke.lplvtssd..vrrdapsplpgaKt.lnyldnvlarreakergadevl.lvdedgnvtEgstsNvfivk......ggelitPplssg. 171
                  + p +++    ++l+ts d  vr+++  +  +aK   ny ++++a + a++rg+ + l l+ ++g++tE++ sN+f+v         e++t+pl++  
   CCE28902.1 199 FMPRMDAPLGgMRLHTSPDdmVRAWVGGF-GYAKVgANYGPSLMATQDARRRGFHQILwLYGQQGECTEAGASNFFVVWqrpgdrEIEIVTAPLDDKl 295
                  66666555559888888761144444444.55555166*****************9998****************6555589988999*******999 PP

  Aminotran_4 172 iLpGitrrallelakal...gleveereitlkdleead......eafltntlrgvlpvrsi 223
                  iL+G+trr++l+ ++++   g+ v er++t+++l ea+      e f  +t+  + pv++i
   CCE28902.1 296 ILDGVTRRSCLDVMRERlgsGVHVTERKYTIDELLEAEaegrllESFAAGTAYFICPVSQI 356
                  ******************8888999**********77633333367777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3251.80
//
Query:       CCE28903.1  [L=375]
Description: uncharacterized protein CPUR_02593 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 3171.06
//
Query:       CCE28904.1  [L=453]
Description: related to phosphoethanolamine cytidylyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-23   83.7   0.0    2.3e-20   73.2   0.0    3.2  3  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   1.3e-24   2.3e-20       2     141 ..      25     148 ..      24     150 .. 0.97
   2 !    3.4   0.0    0.0044        79       1      21 [.     244     264 ..     244     285 .. 0.86
   3 !    3.5   0.0    0.0043        77      28      97 ..     298     371 ..     281     433 .. 0.80

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 1.3e-24
                      EEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-.SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEHHHH CS
  CTP_transf_like   2 agGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkk.kplasaeeRlemlelakevdevisvdpweltrevlkklkpdklylvigadvl 94 
                      ++G+ D++H+GH+  + qa++l++e l+vgv+sde    +k +++++++eRl+   ++++v + +  +p++++ +++ +++++  y+v+g+d  
       CCE28904.1  25 VDGCWDFFHHGHAGAMVQARQLGDE-LYVGVHSDEDILANKgPTVMNLDERLAASDACRWVTKSVGHAPYVTELDYISQYGCK--YVVHGDDIT 115
                      79***********************.***********99977*****************************************..*******99 PP

                      HHHHCHHHHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHH CS
  CTP_transf_like  95 edfsewkeleeilgnvklvvvsrpekqanvllkaekrtngiSstkir 141
                      +d     + +++++ vk +++          +k  kr++giS+t++ 
       CCE28904.1 116 SDS----DGNDCYRFVKQAGR----------FKVVKRSPGISTTDLV 148
                      997....**************..........*************985 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0044
                      EEEE--TT--HHHHHHHHHHH CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqak 21 
                      +++G +D++  GH++ l+q+ 
       CCE28904.1 244 YVDGGYDLFCSGHIEFLRQVM 264
                      679***************986 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.0043
                      EEEEEESSTHCSST-...SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHHHHHHHTTTT.EEEEEEEHHHHHHH CS
  CTP_transf_like  28 livgvpsdeppkkkk...kplasaeeRlemlelakevdevisvdpweltrevlkklkpd.klylvigadvledf 97 
                      ++vgv+ d++ ++ k    p+++ +eR   + ++k+   v+  +p+++t+++l++l      ++ +g  +++ +
       CCE28904.1 298 VVVGVHDDQVINQWKgvnYPIMNIYERGLCVLQCKYIHAVVFGAPFTPTKSYLESLPWGvPSAIYHGPTSFMPL 371
                      89999999999988558899*****************************9888887665556777776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3386.33
//
Query:       CCE28905.1  [L=366]
Description: related to PMU1-high copy suppressor of ts tps2 mutant phenotype [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-12   46.7   0.0      1e-11   44.9   0.0    1.9  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   5.8e-16     1e-11      14     162 ..     134     300 ..     104     306 .. 0.74

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 5.8e-16
                 -.....TT----B-HHHHHHHHHHHHHHTT....S---EE...EE-SSHHHHHHHHHHHHCTT......--EEE-GGGS-.---GGGTT-B.HHHHHH. CS
  His_Phos_1  14 egr.lqgrtdvpLteeGreqAealaerlag....epidai...ysSplkRarqTaeliaealg......lpveldegLrE.idfGdweglttaeiaeey 97 
                 eg     + d+ Lt++G ++ e++ ++++     +++ +    y+SplkR+ qTa+   + l+        ++++e +rE i++  ++ ++++++ +++
  CCE28905.1 134 EGNgTITWADPLLTPDGFKESEKAHAFYEMlyekQNMPHFesyYTSPLKRCLQTANSTFASLKlpakqpFAPIIKELFREdISMHTCDRRSSKSEIAKF 232
                 444457899********99888877775443223443333677*******************9777766556788888877999999977776666665 PP

                 ..HSHHH..HHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT-- CS
  His_Phos_1  98 .peelea..wlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglp 162
                  p ++ +  +++ ++  r+ + E++e+ +aR +++l+++ a+ ++  + v sH g irall +l + p
  CCE28905.1 233 vPGWTFEkgFSETDHLWRADKSETPEHAVARSEKVLDDVFAKDDSTWISVTSHSGEIRALLEALNHRP 300
                 155543312444444444555***********************999***************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2838.84
//
Query:       CCE28906.1  [L=488]
Description: uncharacterized protein CPUR_02596 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0052   15.5   3.7      0.008   14.9   3.7    1.2  1  Herpes_TAF50  Herpesvirus transcription activation factor (tr


Domain annotation for each model (and alignments):
>> Herpes_TAF50  Herpesvirus transcription activation factor (transactivator)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   3.7   4.4e-07     0.008     436     506 ..      75     150 ..      64     162 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.4e-07
  Herpes_TAF50 436 i........amlssslasdgtgaaitpgssLtpitvPQdleaaevatpeavselqppleelpqpldedqalvaqldaaa 506
                            + ls s +s  +g+    gss++++ vP ++   ++a p +++ + p+    ++ ++++q l+ q+++a 
    CCE28906.1  75 LgtsipkeaRKLSFSRKSSLSGSIRRRGSSVGSVAVPNAVVTDAAAPPALPDYALPA---AAKVQQQQQQLQIQQQQAR 150
                   24444555578999999999********************99999999999995555...5667888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3375.54
//
Query:       CCE28907.1  [L=443]
Description: related to translation releasing factor RF-1,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-44  152.1   0.1    3.5e-44  151.0   0.0    1.7  2  PCRF      PCRF domain
    1.5e-35  121.7   1.7    3.2e-35  120.6   1.7    1.6  1  RF-1      RF-1 domain


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.0   0.0     4e-48   3.5e-44      26     193 .]      75     255 ..      52     255 .. 0.90
   2 ?   -2.5   0.1      0.43   3.9e+03      33      33 ..     370     370 ..     328     436 .. 0.59

  Alignments for each domain:
  == domain 1  score: 151.0 bits;  conditional E-value: 4e-48
                 STTHHHHHTHHHHHHHHHHHHHTTTHHH...HT.......-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTTSEEEEEEEE-SSTHHHHHHHHHH CS
        PCRF  26 klskelaeleeivealeeleealedleeakelle...edeelaelaeeeleelekeleeleeelkklLlpkdendeknaileiraGaGGdeaalfaedL 121
                 + +k+  el+++++al +++e l++l+e++++++   +d++la++a++el   +++le+le++l+  L+p+++  +++++le+r+G GG e + fa++L
  CCE28907.1  75 SKAKRAGELHRVATALAAWQECLSSLSELQSMASdpdQDPDLASIARDELILEQQKLETLERNLSASLTPRHPFADMPCLLELRPGPGGLEGRYFADSL 173
                 247899999***********************9457899************************************************************ PP

                 HHHHHHHHHTTT-EEEEEEEEESSS...........SEEEEEEEEESTTHHHHHGGG-EEEEEEEE-TTSSS--EEEEEEEE CS
        PCRF 122 lrmYtryaerkgwkvevldaseeea..........gGikevtleiegegaYgkLkfEsGvHRvqRvpetesqgrihTStatV 193
                 ++mY+  ++r+g++ + l+++ ++             ++e+++e++++ga++ +++E+G+HRvqRvp+tes+gr+hTS+++V
  CCE28907.1 174 FKMYMALCARRGYRAKALKYEMADGagdqsssegeLPLQEAVIEVQDQGAFDIFRSEAGMHRVQRVPSTESKGRVHTSAVAV 255
                 *********************9555599999987658*******************************************98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.43
                 H CS
        PCRF  33 e 33 
                 +
  CCE28907.1 370 S 370
                 1 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   1.7   3.6e-39   3.2e-35       4     116 .]     285     394 ..     282     394 .. 0.94

  Alignments for each domain:
  == domain 1  score: 120.6 bits;  conditional E-value: 3.6e-39
                 CCE--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-..S.-S---S--EC CS
        RF-1   4 eieidekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkk.ekkkigtgsseki 101
                 ++ +d+ +++i+t+rs+GaGGQ+VNktesa+rlthlptg  +v++q++Rsq +Nr++A+++L+++++++++e+++ee+++ r +  +k++i+ g+  ki
  CCE28907.1 285 DFYVDPREVKIETMRSRGAGGQHVNKTESAIRLTHLPTG-TTVSMQDHRSQARNRDDAWKLLRSRIASQRIEKREEEAAALRNSVlSKTQITRGD--KI 380
                 56799**********************************.5*************************99999999999999996669999999999..** PP

                 EEEECGCTTEEEETT CS
        RF-1 102 Rtynkkpqsrvkdhr 116
                 Rtyn+ +q+r++dhr
  CCE28907.1 381 RTYNY-NQDRCTDHR 394
                 *****.99******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3216.34
//
Query:       CCE28908.1  [L=524]
Description: related to glucose transporter-3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-86  289.9  21.3      2e-85  287.4  21.3    1.8  1  Sugar_tr    Sugar (and other) transporter
    1.9e-30  106.0  22.7    1.9e-30  106.0  22.7    2.2  2  MFS_1       Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.24   11.4  11.9      0.089   12.9   8.1    2.2  2  COPI_assoc  COPI associated protein


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.4  21.3   3.3e-89     2e-85       2     443 ..      21     510 ..      20     516 .. 0.93

  Alignments for each domain:
  == domain 1  score: 287.4 bits;  conditional E-value: 3.3e-89
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.............................HHHHHHHTHHHHHHHHHHHHHHHHHHTT CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskee..........................ssvlsglivsiflvGaiiGslfagllgdrfG 74 
                 +++++lg+l+fg++++ ++a+++++ + k+  l++   s                             s+     i ++f vG+++G+l+ag l+   G
  CCE28908.1  21 IFLTTLGPLQFGFHLAELNAPQSVITCRKKSILTTVLRSAVGlgdaitkagqphhstnpltfpecihmSEAAFATISAMFTVGGLMGALYAGRLASEKG 119
                 578999********************99999999998877779******************************************************** PP

                 HHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHH CS
    Sugar_tr  75 RkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwril 173
                 R  +++ ++++f  g++   +a    +v v+++gR+++Gig+G+ +v+vP+yisEiAp++ Rg+++ ++q +i +Gil+++++g++l++ +    wr+ 
  CCE28908.1 120 RVRAMAYTSLVFGLGSATETMAG---NVPVMCIGRIFTGIGAGASTVIVPLYISEIAPPAERGFFGAMTQISINIGILLTQTLGYFLSYGKV---WRYI 212
                 ***********************...******************************************************************...**** PP

                 HHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHC..................HHHHHHHHHHHHHHHHHHH.................. CS
    Sugar_tr 174 lglqlvpallllilllflPESPrylvekgkeeeakevlaklrge..................edadrelaeekdsleaeqeee................ 238
                 ++    +al+  i+l+f+PESP +l   gk+ +a+++l+++rg                   + +d e +   ++++     +                
  CCE28908.1 213 FAAGTCIALAHGIGLCFVPESPTWLAAAGKHAKARRILQRIRGRgtdireetrhrgypevplSARDAEEEGLLNQTDG----Svstprmptaparrvhh 307
                 ****************************************88888789877777777666443333333333344443....14466999999999987 PP

                 ...HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH.. CS
    Sugar_tr 239 kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgiv 337
                 + +++ +++s+t r +++ +v+++++qql+Gin+i+ ys +++ +l    s+l tii++ vn ++t+++++l d +GR+t+ll++++g+ +  + l+  
  CCE28908.1 308 MGFVEVIKDSRT-RPAIIAVVGIMVTQQLCGINSIIMYSVSLLADLLPIHSALLTIIISGVNLFMTIASAPLPDCLGRKTCLLISIFGQGLSSLALA-L 404
                 778888888877.999********************************************************************************8.6 PP

                 HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH.....T-HHHHHHHHHHHHHHH CS
    Sugar_tr 338 alllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig.....ggyvflvfaglavlfii 431
                  +l+ ak     +v+ v++++f+a+fa+g+gpvp++l+sEl +++  +++++ a a+n +a+fl++++fp +  a++     +g+v+++f+glavl+ i
  CCE28908.1 405 SILYGAK-----VVSAVAVLFFVAFFAVGLGPVPFILASELVDPEAVGATQSWALAANYIATFLVAQFFPLVNTALNkalgkAGWVYFLFTGLAVLGGI 498
                 6666666.....8************************************************************************************** PP

                 HHHHHS--STT- CS
    Sugar_tr 432 fvfffvpetkgr 443
                 fv   vpetkg+
  CCE28908.1 499 FVSALVPETKGK 510
                 **********98 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0  22.7   3.1e-34   1.9e-30      27     352 ..      86     464 ..      59     465 .. 0.85
   2 !    4.0   0.9    0.0034        20     137     179 ..     468     511 ..     465     522 .. 0.76

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 3.1e-34
       MFS_1  27 lgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigl 125
                  ++s++++ ++ +++++g + ++l +Grl+   Gr r +  + l+f+lg++  ++a ++++++++r+++G+gaga++ ++  +i++++p+ erg+  ++
  CCE28908.1  86 IHMSEAAFATISAMFTVGGLMGALYAGRLASEKGRVRAMAYTSLVFGLGSATETMAGNVPVMCIGRIFTGIGAGASTVIVPLYISEIAPPAERGFFGAM 184
                 5899*************************9999****************44444789999*************************************** PP

       MFS_1 126 lsagfslGailgpllggllasslg..Wravfyilaivsllafvlfllllpeepperkrkspkeee.................................. 188
                  ++++++G++l+  lg +l+  +g  Wr++f + + ++l  ++ +l+++pe+p+  +   +  +                                   
  CCE28908.1 185 TQISINIGILLTQTLGYFLS--YGkvWRYIFAAGTCIALAHGI-GLCFVPESPTWLAAAGKHAKArrilqrirgrgtdireetrhrgypevplsardae 280
                 ********************..4445**999999999999999.3477766666666665555559999999999999999999999999999999999 PP

       MFS_1 189 ......................kgtgpaplvpawkallkdpvlwillialllf.....ffgfsglltllplylqevlglsglllaglllallalvgail 260
                                        ++ + ++v+++k  +++p    ++ia++++      +g++++ +++ ++l + l +     ++ll  +++ v++++
  CCE28908.1 281 eegllnqtdgsvstprmptapaRRVHHMGFVEVIKDSRTRP----AIIAVVGImvtqqLCGINSIIMYSVSLLADLLPIH----SALLTIIISGVNLFM 371
                 99***999999888887777777777777777*********....66666666123444444446666666555555555....6666999999999** PP

       MFS_1 261 allagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                  + ++ l d lgr++ ll+++++  l++l+lal  ++  +v++++ vl+++ f++    p  + las+l+ pe+ g+ ++++  a++++++l 
  CCE28908.1 372 TIASAPLPDCLGRKTCLLISIFGQGLSSLALALSILYGAKVVSAVaVLFFVAFFAVGLGPVPFILASELVDPEAVGATQSWALAANYIATFLV 464
                 *************************************9999999977788888666679******************************9986 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0034
       MFS_1 137 gpllggllasslg.Wravfyilaivsllafvlfllllpeepper 179
                  pl+  +l  +lg   +v+++++++++l+++++ +l+pe++ + 
  CCE28908.1 468 FPLVNTALNKALGkAGWVYFLFTGLAVLGGIFVSALVPETKGKA 511
                 57777888866666889999999999999999888887776655 PP

>> COPI_assoc  COPI associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   8.1   1.5e-05     0.089       9     116 ..     327     440 ..     322     454 .. 0.77
   2 ?   -2.8   0.1         1   6.1e+03      93     107 ..     485     499 ..     478     508 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
  COPI_assoc   9 lvvgglaillgisqliilfsnflsfilsiYiillgivlillEfrvpfe.......iykyfsfmfsylGRGlfyillgllvsyggvlsilial.llflvG 99 
                 +++ +++ l gi ++i +  ++l+ +l+i++ ll+i++  + + +          + ++   ++s++G Gl  + l+l + yg   +++ a+ +lf+v+
  CCE28908.1 327 VGIMVTQQLCGINSIIMYSVSLLADLLPIHSALLTIIISGVNLFMTIAsaplpdcLGRKTCLLISIFGQGLSSLALALSILYG--AKVVSAVaVLFFVA 423
                 556677889999999999999999999999999999888777665555788899999********************999988..44444442577788 PP

  COPI_assoc 100 Lvyillhlvpsieepen 116
                 ++ ++l+ vp i + e 
  CCE28908.1 424 FFAVGLGPVPFILASEL 440
                 88888888877765555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1
  COPI_assoc  93 lllflvGLvyillhl 107
                 + ++++GL+ ++  +
  CCE28908.1 485 VYFLFTGLAVLGGIF 499
                 344445554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3561.37
//
Query:       CCE28909.1  [L=248]
Description: related to DCG1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-07   29.0   0.0    1.8e-06   28.0   0.0    1.6  1  Asp_Glu_race  Asp/Glu/Hydantoin racemase
      0.008   15.8   1.3      0.075   12.6   0.1    2.1  2  Amdase        Arylmalonate decarboxylase


Domain annotation for each model (and alignments):
>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0     2e-10   1.8e-06       4     138 ..       6     144 ..       3     217 .. 0.59

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2e-10
                   CSCCCCHHHHHHHHHHBTTSSGGGS..EEEEE-CC.S-TCHHHH...HCH.T..THHHHHHHHHHHHC..TTESEEEE--CHHHHHHHHHHHH-SSE CS
  Asp_Glu_race   4 mgpeatlsvlrklveatpaesdqehlplivlndsa.ipdrteai...eeesgddpvlklleaakkLek..agadaiviaCnTahavadelqkkikiP 94 
                   ++p+++++++ ++ +a++ +  +  l+++ +  ++ +p +++ +   +++++d     l e+++k ++   g dai+iaC++ h++++el+  +++P
    CCE28909.1   6 LNPNSSTAMTDSMLQAAKSTPISASLEIVSMTATSaAPASINNNqdiQASTED----ILVESLAKKSDlfRGFDAILIACFSVHTLVPELSLRLDVP 98 
                   57778888888888777777777777777777666566333333121222333....555555554444469************************* PP

                   EEECHHHHHHHHHH...HSS-EEEEEE-HHHHHCTHHHHHHHHHGT. CS
  Asp_Glu_race  95 vlgiveataealka...tgvkkvglLgTrgtlksglyqkeleanqgi 138
                   v gi ea++  + +      ++ g+++T g+  ++  ++ + ++ gi
    CCE28909.1  99 VTGIFEASILTALSllrRSSEQWGIVTT-GEFWEKHLREGVDEYLGI 144
                   ********66555555477778888874.555555555555555566 PP

>> Amdase  Arylmalonate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   8.4e-06     0.075     117     208 ..      29     118 ..      12     125 .. 0.86
   2 ?    2.3   0.1     0.012   1.1e+02     149     177 ..     178     206 ..     149     246 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.4e-06
      Amdase 117 ayLeesglevaalesLdiedveavakvtaeelvelgkkavaaapeadallisCGGLrtldvvreledelglpvvssalAGlwdavrlaglda 208
                 a Le   +++++ +  +i++ +++++ t++ lve   k  +  +  da+li+C  ++tl  v el  +l +pv+   +A +  a++l+ +++
  CCE28909.1  29 ASLEIVSMTATSAAPASINNNQDIQASTEDILVESLAKKSDLFRGFDAILIACFSVHTL--VPELSLRLDVPVTGIFEASILTALSLLRRSS 118
                 56777788889999999************************************988886..88999999****9999999988888877765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.012
      Amdase 149 velgkkavaaapeadallisCGGLrtldv 177
                 + l+ + +  ++++  +++ CGG+  l+ 
  CCE28909.1 178 LGLAARRLLMSGNVTCVVMGCGGMAGLEE 206
                 45666666688899999999999887653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1959.91
//
Query:       CCE28910.1  [L=391]
Description: probable actin-like protein ACT2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.7e-112  375.4   0.0   1.6e-111  372.8   0.0    1.8  1  Actin        Actin
     0.0066   15.3   0.0       0.07   11.9   0.0    2.1  1  MreB_Mbl     MreB/Mbl protein
  ------ inclusion threshold ------
       0.12   11.5   0.2       0.67    9.1   0.1    2.0  2  Actin_micro  Putative actin-like family


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.8   0.0  2.7e-115  1.6e-111       3     404 ..       3     387 ..       1     389 [. 0.95

  Alignments for each domain:
  == domain 1  score: 372.8 bits;  conditional E-value: 2.7e-115
       Actin   3 evsavVlDnGssttraGyagedaPkavipslvgkprgrkvea.........klyvgdealtkrpelevrspvedGvvedwdaveelwehvlkeelkvdp 92 
                 +++ +VlD G++++++Gyag ++P++ +ps+vg+p  r++e          ++ +gdea + r++l++++p+e+G+v+ wd++++lw++++ e+lkvd+
  CCE28910.1   3 NTPPIVLDGGTGFLKVGYAGQNFPEHQFPSIVGRPILRSEERiddsnvvikDIMCGDEAAAARTMLQISYPMENGIVKRWDDMQHLWDYTFNEKLKVDT 101
                 5789******************************99998777999*****9************************************************ PP

       Actin  93 eehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellsskn 191
                 + +++lltepp+np k+re+++E++f+ +++ ++y+a +avl+++a+g+s+g+vvDsG++vt++vpV++ +vL++ ++r+d++G+++t++l +ll ++ 
  CCE28910.1 102 NGQKILLTEPPMNPLKNREQMCEVMFDRYGFGGVYVAIQAVLALYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLTKRLDVAGRDVTRNLIKLLLRR- 199
                 ***********************************************************************************************998. PP

       Actin 192 vevtprylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpegdeekss..sspeksYeLPDgseiklgeeRfkvpEiLFdpsl 288
                                              +++++ +++ e++++iKe++c+vs+d e d++ s+  +   ++Y+LPDg++i +g+eRf++pE+LF+p+l
  CCE28910.1 200 -----------------------------GYALNRTADFETVRQIKEKLCYVSYDLELDKRLSEdtTVLVENYTLPDGRVIRVGSERFEAPECLFQPHL 269
                 .............................9**************************9966666555899999*************************** PP

       Actin 289 igsesaleeekskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaql...........askgvkvkiiapeeerkysaWiGGS 376
                 + ses          g+ e ++++i+a+dvd+r++L++ iv++GG+s++pgl +Rlekel+ql              ++kv+i  p+ +r++++++GG+
  CCE28910.1 270 VDSESP---------GLGEFLFNTIQAADVDIRSSLFKAIVLSGGSSMYPGLPSRLEKELKQLwltralqgnpeRLGKFKVRIEDPP-RRRHMVFLGGA 358
                 ****99.........************************************************8888777666655666********.*********** PP

       Actin 377 iLAslg.tfqqlwvskqEYeEqGssvver 404
                 +LA+++ + +++wv+k+E++EqG++v e+
  CCE28910.1 359 VLANIMaDKESMWVTKAEWDEQGPRVLEK 387
                 *****956669**************9987 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.2e-05      0.07      56     297 ..      67     320 ..      56     325 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.2e-05
                 TEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-.SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE- CS
    MreB_Mbl  56 nikavrPlkdGviadlevaeellkyfikkvkkkkslskprvvicvP.sgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvvdiG 153
                  +++  P+++G+++  +  ++l  y +++  k ++ + ++++++ P ++  +   +  + +  + G   v++  ++++A    gl     s+ +vvd G
  CCE28910.1  67 MLQISYPMENGIVKRWDDMQHLWDYTFNEKLKVDT-NGQKILLTEPpMNPLKNREQMCEVMFDRYGFGGVYVAIQAVLALYAQGL-----SSGVVVDSG 159
                 56777899999999999999999999888777544.5555666555044444444555556788999999998888888776666.....5779***** PP

                 SS-EEEEEEETTEEEE...EEEES-SHHHHHHHHHHH.HHHHHSEE..--HHHHHHHHHHH-BSS--HHHH.....EEEEEEEETTTTCEEEEEEEHHH CS
    MreB_Mbl 154 ggttevavislggivt...sksvrvaGdeldeaiiky.irkkynll..iGertaekikieigsavkeeeee.....kmeikGrdlvtglpkevevssee 241
                  g t ++ +   ++v    +k++ vaG ++  ++ik+ +r+ y l      +t+++ik ++ ++  + e +      +++   + +    + ++v se+
  CCE28910.1 160 DGVTHIVPVY-ESVVLnhlTKRLDVAGRDVTRNLIKLlLRRGYALNrtADFETVRQIKEKLCYVSYDLELDkrlseDTTVLVENYTLPDGRVIRVGSER 257
                 *****97664.4455312268999*******99998637999998621556899*****9998876554332222333444444333334566666654 PP

                 HH..HHHHHH..HHH....HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH CS
    MreB_Mbl 242 vr..ealkep..vsa....iveavkevLektppeLaadivdrgivltGGgallkgldkllseet 297
                  +  e+l +p  v +    + e + ++++++  ++ + ++ ++ivl+GG+++  gl + l++e+
  CCE28910.1 258 FEapECLFQPhlVDSespgLGEFLFNTIQAADVDIRSSLF-KAIVLSGGSSMYPGLPSRLEKEL 320
                 4311455443112221111333344444444444444443.57777777777777777777765 PP

>> Actin_micro  Putative actin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.079   4.7e+02     136     190 ..     121     175 ..     118     185 .. 0.83
   2 ?    9.1   0.1   0.00011      0.67     327     362 ..     350     386 ..     321     388 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.079
  Actin_micro 136 alvdlflnisgfkGilllPesLalclglgiqsaiviseyekhttvslveDyvlld 190
                  ++++++ +  gf G+ +  +++    + g++s++v++  +  t ++ v   v+l+
   CCE28910.1 121 QMCEVMFDRYGFGGVYVAIQAVLALYAQGLSSGVVVDSGDGVTHIVPVYESVVLN 175
                  5999************9988888888999********999988877766666655 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00011
  Actin_micro 327 essilrgakvlkelevsKe.lWlTDkEWnsvrlRvLK 362
                    +++ g  vl+++   Ke +W+T  EW+  + RvL 
   CCE28910.1 350 RHMVFLGGAVLANIMADKEsMWVTKAEWDEQGPRVLE 386
                  568889999*********978**************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3041.78
//
Query:       CCE28911.1  [L=441]
Description: probable methionyl aminopeptidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-45  155.2   0.1    2.6e-45  154.7   0.1    1.2  1  Peptidase_M24  Metallopeptidase family M24
  ------ inclusion threshold ------
       0.18   10.9   5.2       0.31   10.2   5.2    1.3  1  Med3           Mediator complex subunit 3 fungal
          2    9.0   6.9       0.58   10.8   1.8    2.1  2  DUF4682        Domain of unknown function (DUF4682)


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.7   0.1   4.3e-49   2.6e-45       2     208 ..     125     428 ..     124     429 .. 0.90

  Alignments for each domain:
  == domain 1  score: 154.7 bits;  conditional E-value: 4.3e-49
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT..........TCEESSSSEEEEGGGGGSTTTBC...SSSB--TTEEEEEEEEEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhg..........arglafppivasgenaavlhytp...ndrvlkegdlvlidagae 84 
                    ++r+aa+i++++++++++ i+pg t  e+a+ ie+ +++ +g          + g++fp  ++++ n++++hytp   n+ vl+++d++++d+g++
     CCE28911.1 125 DYREAAEIHRQVRQYAKKTIRPGQTLTEIAETIENGVRSLTGhsgltegdalVAGMGFP--CGLSLNHCAAHYTPnagNKMVLQQDDVMKVDFGVH 218
                    68********************************99787777788999999999*****..**************7777777************** PP

                    ETTEEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTB........CCGBSSCSEEEESS.SSSEE..EEEES CS
  Peptidase_M24  85 ydgyasDitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesagl........akffphglGHgvGl.evhde..gpsvs 169
                    ++g + D+++Tv++   +p++++l++av+ea++a+i+++  +++++ei+ +++e++es ++        +k +++++GH +   ++h+   +p+v+
     CCE28911.1 219 VNGRIVDSAFTVAF---EPKYDDLLKAVQEATNAGIREAGIDARVGEIGGVIQETMESFEVeidgttypVKSIRNLTGHNILPySIHGTkaVPIVK 311
                    **************...899*************************************9744557778898999*********88***775567777 PP

                    SSTTCSSB--TTBEEEEEE......EEEEETTT............................................................... CS
  Peptidase_M24 170 resndgrkleeGmvftiEp......giyfapge............................................................... 196
                      s+d++k+eeG+vf+iE+      g++  +                                                                 
     CCE28911.1 312 --SDDQTKMEEGDVFAIETfgstgnGYVRDD-Mevshyaknaevqhvdlrlssakallnvinknfgtlpfcrryldrlgqdkyllglnslvqngvv 404
                    ..789**************988888666333.134556666777888889999999999999999******************************* PP

                    ............EEEEEBEEEEEE CS
  Peptidase_M24 197 ............ggvriedtvlvt 208
                                +++++e+t+l++
     CCE28911.1 405 eaypplcdkkgsYTAQFEHTILIR 428
                    ***********77*********97 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.2   5.2e-05      0.31     173     215 ..      24      76 ..       2      98 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 5.2e-05
        Med3 173 a...........tigtptnsaaaaattatttssqakkPrkPrqtkkaaakaaak 215
                 a             +++ n+aa  a  a + +++ kk rkPr++kkaa +a+ +
  CCE28911.1  24 AgdqkedraeesDDDADENDAADGADGA-SGAAKKKKKRKPRKKKKAAPNAQTE 76 
                 3444444444334455567777777777.667788999********88888765 PP

>> DUF4682  Domain of unknown function (DUF4682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3      0.15   9.1e+02      91     120 ..      12      41 ..       5      45 .. 0.86
   2 ?   10.8   1.8   9.7e-05      0.58      27     117 ..      66     155 ..      55     161 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.15
     DUF4682  91 hlrvhrrnqarakkelkkgdskgkeeeese 120
                 +l+vh+  q+ + +++k+++++++ ++ +e
  CCE28911.1  12 ELKVHDVAQTTTAGDQKEDRAEESDDDADE 41 
                 578999999999999999999999999887 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 9.7e-05
     DUF4682  27 kgtatsvlpsqvnpss.vvNhLllgkkarssnkgkrnkapqkavppeakrsslklkskeespWrthlrvhrrnqarakkelkkgdskgkeee 117
                 k +a    ++q++p s +v++L+ +k+    +  + ++  +  + +e+kr+  +l+s+  s  r++ ++hr++ + akk++  g++ + + e
  CCE28911.1  66 KKKA--APNAQTEPPSvMVSQLFPNKSYPKGEEVEYKDDNNYRTTNEEKRHLDNLQSEFLSDYREAAEIHRQVRQYAKKTIRPGQTLTEIAE 155
                 3344..33445555555*********998777777776666666666666666688889999*******************99999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1143  (0.0637515); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3142.03
//
Query:       CCE28912.1  [L=260]
Description: uncharacterized protein CPUR_02602 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-05   22.7   0.0      0.012   15.4   0.0    2.1  2  PRK              Phosphoribulokinase / Uridine kinase family
    0.00011   22.8   0.0    0.00032   21.3   0.0    1.7  2  AAA_18           AAA domain
    0.00055   20.4   0.0     0.0053   17.2   0.0    2.1  2  AAA_17           AAA domain
    0.00056   20.2   0.0    0.00096   19.4   0.0    1.3  1  AAA_22           AAA domain
    0.00065   18.8   0.0    0.00088   18.3   0.0    1.1  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0011   19.1   0.0     0.0065   16.6   0.0    2.0  2  AAA_33           AAA domain
      0.002   18.0   0.0     0.0035   17.3   0.0    1.4  1  NACHT            NACHT domain
     0.0034   16.6   0.0      0.005   16.1   0.0    1.2  1  NB-ARC           NB-ARC domain
     0.0053   16.4   0.0      0.021   14.5   0.0    1.8  2  Thymidylate_kin  Thymidylate kinase
      0.008   15.3   0.0      0.011   14.8   0.0    1.2  1  T2SSE            Type II/IV secretion system protein
  ------ inclusion threshold ------
       0.01   15.7   0.0       0.02   14.8   0.0    1.4  1  MobB             Molybdopterin guanine dinucleotide synthesis
      0.011   16.1   0.0      0.026   14.9   0.0    1.5  1  AAA_16           AAA ATPase domain
      0.013   15.1   0.0      0.021   14.4   0.0    1.3  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.014   14.6   0.0      0.024   13.9   0.0    1.3  1  Zeta_toxin       Zeta toxin
      0.021   15.4   0.0       0.27   11.8   0.0    2.1  2  ABC_tran         ABC transporter
      0.027   13.9   0.0       0.04   13.4   0.0    1.2  1  KTI12            Chromatin associated protein KTI12
      0.039   13.7   0.0      0.056   13.2   0.0    1.2  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.046   14.1   0.0      0.079   13.4   0.0    1.3  1  AAA              ATPase family associated with various cellul
      0.088   13.2   0.0       0.15   12.5   0.0    1.4  1  RNA_helicase     RNA helicase
      0.095   12.6   0.0       0.16   11.8   0.0    1.3  1  NTPase_1         NTPase
       0.12   11.6   0.0       0.12   11.6   0.0    1.1  1  KAP_NTPase       KAP family P-loop domain
       0.16   11.5   0.0       0.22   11.0   0.0    1.2  1  GTP_EFTU         Elongation factor Tu GTP binding domain
       0.16   11.7   0.0       0.26   11.0   0.0    1.2  1  AAA_30           AAA domain
       0.18   11.9   0.0       0.32   11.1   0.0    1.3  1  Torsin           Torsin
       0.18   11.5   0.0       0.31   10.8   0.0    1.3  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
        0.2   11.8   0.0       0.33   11.1   0.0    1.3  1  MMR_HSR1         50S ribosome-binding GTPase
        0.2   11.3   0.0       0.36   10.5   0.0    1.3  1  AAA_24           AAA domain
        0.2   11.5   0.0       0.33   10.8   0.0    1.3  1  APS_kinase       Adenylylsulphate kinase
       0.26   11.1   0.0       0.47   10.3   0.0    1.4  1  dNK              Deoxynucleoside kinase


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.9e-05     0.012       1      29 [.      28      56 ..      28      71 .. 0.89
   2 ?    5.3   0.0     0.023        14      84     140 ..     136     196 ..     132     206 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.9e-05
         PRK  1 vIgvagsSGaGkttvarklekifgrekvk 29
                +Ig+ag  G+Gktt+a++l++ ++r +++
  CCE28912.1 28 LIGIAGIPGSGKTTLAETLVEDLNRRAKH 56
                69**********************98887 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.023
         PRK  84 gkkvdkpiYsheteeaapdkeeliegadvlviEGlhalyderv....aelldlkiyvdisi 140
                 +k++  p ++h  ++ + d   ++ +  +++iEG + + d++v    a lld   +v ++ 
  CCE28912.1 136 SKTILAPSFDHAIKDPKDDDIAVLPSHRIVFIEGSYLALDKEVwrdgAALLDELWFVEVDF 196
                 6777778888888777778888999999************996322255666666665555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   5.1e-07   0.00032       1      23 [.      29      51 ..      29      74 .. 0.85
   2 ?   -1.8   0.0       6.9   4.2e+03      96     114 ..     184     207 ..     145     213 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.1e-07
      AAA_18  1 IlltGtpGvGKttlakeLskrlg 23
                I+++G+pG+GKttla+ L + l+
  CCE28912.1 29 IGIAGIPGSGKTTLAETLVEDLN 51
                89****************98874 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 6.9
      AAA_18  96 k.....vvLtaspeelleRlekRg 114
                        +++++ e+ + Rl++R 
  CCE28912.1 184 AlldelWFVEVDFEVARCRLRERH 207
                 244444577888888888888885 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.6e-06    0.0053       2      20 ..      33      51 ..      32      58 .. 0.92
   2 ?    0.8   0.0      0.99   6.1e+02      58     122 ..     141     206 ..     118     214 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.6e-06
                E-TTSSHHHHHHHHHHHHT CS
      AAA_17  2 GgPGsGKgtqceklvekyg 20
                G+PGsGK+t++e+lve+++
  CCE28912.1 33 GIPGSGKTTLAETLVEDLN 51
                9***************986 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.99
                 HHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHHHHH....SEEEEEE--HHHHHHHHHHH CS
      AAA_17  58 qkeaaekiaeeakkkgvlvdghprikeqagfldglpkevleelkp..daiilleadpeeilerrlkd 122
                       +i++ ++++ +++  h  +  +  +l  l+kev ++     d + ++e+d e+ + r+ ++
  CCE28912.1 141 APSFDHAIKDPKDDDIAVLPSHRIVFIEGSYL-ALDKEVWRDGAAllDELWFVEVDFEVARCRLRER 206
                 55556678888888888888888776655554.5777776655433499999999999777766655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.5e-06   0.00096       5      38 ..      26      63 ..      22     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.5e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee....e 38
                + ++ + G +G+GKTtl+++l+e l+++ak++     +
  CCE28912.1 26 RLLIGIAGIPGSGKTTLAETLVEDLNRRAKHDLveapN 63
                5677799********************99999877441 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.4e-06   0.00088      29      58 ..      26      55 ..       7      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.4e-06
                SEEEEEEE-TTSSHHHHHHHHHHHHHCTT- CS
        MeaB 29 aqvvGltGvPGaGkstlvealglelrrrGk 58
                   +G+ G+PG+Gk tl e l++ l rr k
  CCE28912.1 26 RLLIGIAGIPGSGKTTLAETLVEDLNRRAK 55
                5679*********************99976 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     1e-05    0.0065       4      24 ..      31      51 ..      28     111 .. 0.87
   2 ?    0.1   0.0       1.3     8e+02      99     121 ..     187     209 ..     176     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1e-05
      AAA_33  4 lvGlpGsGKstlaerllkklg 24
                + G pGsGK+tlae l++ l 
  CCE28912.1 31 IAGIPGSGKTTLAETLVEDLN 51
                68**************99876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.3
      AAA_33  99 vrivvvetdeetlkeRlakRaan 121
                 +++ +ve+d e+++ Rl++R  +
  CCE28912.1 187 DELWFVEVDFEVARCRLRERHLQ 209
                 57789999999999999999865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.6e-06    0.0035       3      67 ..      29      95 ..      27     122 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.6e-06
                EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC...-SEEEEEETTTTTTS-...-HCHHHCCCCTS--S CS
       NACHT  3 vilqGeaGsGKTtLlqklalawaegklpqga...fklvFflslrelsrsgnarsladllfsqlpepaa 67
                + + G +GsGKTtL++ l++++ ++          +++F+ s +       + +l +++ s +p+p +
  CCE28912.1 29 IGIAGIPGSGKTTLAETLVEDLNRRAKHDLVeapNEFPFYASPAISIPMDGF-HLPRQVLSAMPDPTE 95
                56899*****************988755443456778888776654444444.555555555555544 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   8.1e-06     0.005      18      45 ..      24      51 ..       7      59 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.1e-06
                SCSEEEEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC 18 lqslvvalvGmgGvGKttlakqilnksd 45
                 q+l++++ G +G+GKttla+  +++++
  CCE28912.1 24 DQRLLIGIAGIPGSGKTTLAETLVEDLN 51
                36799****************9999854 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.3e-05     0.021       2      30 ..      32      60 ..      31      68 .. 0.84
   2 ?   -1.1   0.0       2.1   1.3e+03     123     140 ..     191     208 ..     185     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.3e-05
                     EESTTSSHHHHHHHHHHHHHHTTE.EEEE CS
  Thymidylate_kin  2 EGlDGaGKttqaellkerlkeegikvvlt 30
                      G+ G+GKtt ae+l+e l++++++ ++ 
       CCE28912.1 32 AGIPGSGKTTLAETLVEDLNRRAKHDLVE 60
                     699******************99885544 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.1
                      EEESSHHHHHTSCCTTSS CS
  Thymidylate_kin 123 lldvdpevalkRlakrde 140
                      +++vd eva  Rl++r+ 
       CCE28912.1 191 FVEVDFEVARCRLRERHL 208
                      889999999999999987 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.8e-05     0.011     127     175 ..      24      71 ..       7      90 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
       T2SSE 127 rerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqlegan 175
                  +r li ++G  gsGKttl+ +l++ +n +  +  +vE p E    +  
  CCE28912.1  24 DQRLLIGIAGIPGSGKTTLAETLVEDLNRR-AKHDLVEAPNEFPFYASP 71 
                 47888999*********************9.777889999998766555 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.3e-05      0.02       2      26 ..      29      53 ..      28      56 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.3e-05
        MobB  2 lgivgksgsGKTtLleklipelkar 26
                +gi+g  gsGKTtL e l++ l++r
  CCE28912.1 29 IGIAGIPGSGKTTLAETLVEDLNRR 53
                89*******************9987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   4.2e-05     0.026      22      68 ..      24      66 ..      11     103 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.2e-05
      AAA_16 22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaip 68
                ++  l+ + G +G+GK++l+++l + l+++    ++ + ++ + + p
  CCE28912.1 24 DQRLLIGIAGIPGSGKTTLAETLVEDLNRR----AKHDLVEAPNEFP 66
                444778899******************999....5555555544444 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.4e-05     0.021       3      24 ..      29      53 ..      27      66 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.4e-05
                EEEEESTTCCHHHHHHHHH...CT- CS
        cobW  3 tvltGflGsGKTtLlnhll...enr 24
                ++++G +GsGKTtL ++l+   ++r
  CCE28912.1 29 IGIAGIPGSGKTTLAETLVedlNRR 53
                789***************9654333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.9e-05     0.024      14      42 ..      24      52 ..      14      60 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.9e-05
  Zeta_toxin 14 erPklillgGqpGAGKselaellkdeler 42
                ++  li ++G pG+GK++lae l ++l+r
  CCE28912.1 24 DQRLLIGIAGIPGSGKTTLAETLVEDLNR 52
                56678999***************999964 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00043      0.27      13      36 ..      28      51 ..      18      64 .. 0.82
   2 ?    1.4   0.0      0.68   4.2e+02      84     117 ..     195     224 ..     126     225 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00043
                EEEEEESTTSSHHHHHHHHTTSS- CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllk 36
                +++i G  G+GK+tL+++l + l+
  CCE28912.1 28 LIGIAGIPGSGKTTLAETLVEDLN 51
                589**************9987765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.68
                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrv 117
                 ++e a+ +l+  +l++ +v    ssLS+G k+ +
  CCE28912.1 195 DFEVARCRLRERHLQAGIV----SSLSEGDKRAL 224
                 4566666666666666776....******99865 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.5e-05      0.04       3      30 ..      28      55 ..      27      65 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.5e-05
                EEEEE--TTSSHHHHHHHHHHHHHHTT- CS
       KTI12  3 LvvltGlPssGKstrakeLakaleeekr 30
                L+ + G+P sGK+t+a++L + l+ + +
  CCE28912.1 28 LIGIAGIPGSGKTTLAETLVEDLNRRAK 55
                7889*****************9998654 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     9e-05     0.056       3      31 ..      31      54 ..      29      74 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9e-05
  Viral_helicase1  3 vhGvpGcGKStlirkllrtsliltvnrpt 31
                     ++G+pG+GK+tl  +l+++ l+    r++
       CCE28912.1 31 IAGIPGSGKTTLAETLVED-LN----RRA 54
                     89**********9999988.33....333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   0.00013     0.079       3      25 ..      31      53 ..      29      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00013
                EESSTTSSHHHHHHHHHHHHTHE CS
         AAA  3 lyGppGtGKTllakavakelgve 25
                + G pG GKT+la+ ++++l+++
  CCE28912.1 31 IAGIPGSGKTTLAETLVEDLNRR 53
                679***************99754 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00024      0.15       3      36 ..      31      69 ..      29      93 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00024
  RNA_helicase  3 lyGpsgeGKStlakeLakallkkl.....klkkkdsvys 36
                  + G +g GK+tla++L+++l ++      + +++  +y+
    CCE28912.1 31 IAGIPGSGKTTLAETLVEDLNRRAkhdlvEAPNEFPFYA 69
                  6799****************9777555555555555555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00027      0.16       2      25 ..      29      52 ..      28      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00027
                EEEE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellks 25
                + i G pG+GKtTl + ++e l++
  CCE28912.1 29 IGIAGIPGSGKTTLAETLVEDLNR 52
                6799****************9976 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019      0.12      18      55 ..      24      67 ..       3     195 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
  KAP_NTPase 18 atpivvgLygkWGsGKssllnkledelkefa......kpvrflf 55
                 + + +g+ g  GsGK++l + l ++l+ +a      +p++f f
  CCE28912.1 24 DQRLLIGIAGIPGSGKTTLAETLVEDLNRRAkhdlveAPNEFPF 67
                67899*************************98888885555554 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00036      0.22       4      36 ..      27      59 ..      24      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00036
                EEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHH CS
    GTP_EFTU  4 rnigiighvDhGKtTLtdrLlyktgaiskkgek 36
                + igi+g   +GKtTL ++L++++++ +k+  +
  CCE28912.1 27 LLIGIAGIPGSGKTTLAETLVEDLNRRAKHDLV 59
                568999999**************9998886655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00042      0.26      16      46 ..      24      54 ..      16      64 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00042
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaag 46
                +++++  + G +G+GKtt+ ++l+e ++++ 
  CCE28912.1 24 DQRLLIGIAGIPGSGKTTLAETLVEDLNRRA 54
                667788899************9988777664 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00051      0.32      45      81 ..      18      54 ..       5      66 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00051
                HT-SS-SS-EEEEEEE-TTSSHHHHHHHHHHHHSTTG CS
      Torsin 45 lenekpkkpLvlsfhGwtGtGknfvaeiiaenlyrdG 81
                 ++ kp++ L + + G +G+Gk  +ae ++e+l r+ 
  CCE28912.1 18 YAQLKPDQRLLIGIAGIPGSGKTTLAETLVEDLNRRA 54
                345689999**********************998865 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0005      0.31      37      62 ..      30      55 ..       2      62 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0005
      RuvB_N 37 llyGpPGlGkttlakiiakelgvklk 62
                 ++G PG Gkttla+ + ++l+ + k
  CCE28912.1 30 GIAGIPGSGKTTLAETLVEDLNRRAK 55
                35789**************9997765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00053      0.33       2      23 ..      29      51 ..      28      61 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00053
                EEEEESTTSSHHHHHHHHHTS.T CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge.k 23
                ++i+G p +GK+tL  +l+++ +
  CCE28912.1 29 IGIAGIPGSGKTTLAETLVEDlN 51
                89****************98632 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00058      0.36       5      22 ..      29      46 ..      26      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00058
      AAA_24  5 iliyGpsgiGKTtlakel 22
                i i G +g+GKTtla +l
  CCE28912.1 29 IGIAGIPGSGKTTLAETL 46
                789************998 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00054      0.33       4      32 ..      28      56 ..      25      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00054
                EEEEESSTTSSHHHHHHHHHHHHHHTT-- CS
  APS_kinase  4 vvwltGlsgsGKstianalekkLvekgis 32
                 + ++G+ gsGK+t+a++l + L+++ ++
  CCE28912.1 28 LIGIAGIPGSGKTTLAETLVEDLNRRAKH 56
                56689******************998765 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00075      0.47       1      32 [.      29      60 ..      29      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00075
                EEEEESTTSSHHHHHHHHHCCSTCEEEE-HHH CS
         dNK  1 ivveGnIgaGKstlvklLskklgvkvfeEpvd 32
                i + G  g+GK+tl+++L + l+  + +++v+
  CCE28912.1 29 IGIAGIPGSGKTTLAETLVEDLNRRAKHDLVE 60
                6799***************9999888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1905.59
//
Query:       CCE28913.1  [L=261]
Description: uncharacterized protein CPUR_02603 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-19   67.6   0.0    2.4e-18   66.3   0.0    1.7  1  AhpC-TSA_2  AhpC/TSA antioxidant enzyme
    9.3e-05   22.3   0.0    0.00014   21.8   0.0    1.3  1  AhpC-TSA    AhpC/TSA family
  ------ inclusion threshold ------
      0.091   12.5   0.1       0.22   11.3   0.0    1.7  2  Redoxin     Redoxin


Domain annotation for each model (and alignments):
>> AhpC-TSA_2  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   4.1e-22   2.4e-18      13     101 ..     118     213 ..     102     238 .. 0.86

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 4.1e-22
  AhpC-TSA_2  13 gvklvaigigdps.akkFvkltgfpfelyvDpsaklyqalglkrglklklaplslqka.....lenllkrlkei.gipgdlageltqrGGtflfdk 101
                 ++++vaig+gdp  ++ +v+ t++pf++y+Dpsa+l+++lg++++l+l+ +p++++k+     l+++ + l+ i +    ++g+  q GG+flf++
  CCE28913.1 118 STSIVAIGCGDPAlIDMYVETTKWPFDIYTDPSASLFRELGMTKTLALGKKPGYIKKGffvnvLHSVGQALRSIpEGLALKSGDQRQVGGEFLFEP 213
                 578*********77*************************************999888864333556666666667777778*************86 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.4e-08   0.00014       6     115 ..      56     178 ..      51     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.4e-08
                 ---EEESTTCEEEECHHH...TT..SEEEEEEESTST-CCHHHHHHHHHHCH..HHCCCT..TEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHH CS
    AhpC-TSA   6 pdfelknadgetvslsdy...kg..kpvvlffypkdwcpvCttelpalakly..eefker..gvevigvsvdspeshkkfiekeslnfpllsDeegkva 95 
                  d  + +++g+   ++d+   +g  + v++ f+++  c  C + l++la+ +  e + ++     ++++ + +p+ +  ++e+ +++f++  D++  ++
  CCE28913.1  56 DDYRVLDKHGKLTPFKDLyrgSGqkRRVLVIFIRHFYCGNCHEYLRSLAASItpESLSSLpvSTSIVAIGCGDPALIDMYVETTKWPFDIYTDPSASLF 154
                 566667778888888888855336577888888888**************9987778877335589********************************* PP

                 HHTT-EETT....TTECSCEEEEE CS
    AhpC-TSA  96 kaygvlkee....kglalratfvi 115
                 +++g+ k+     k + +++ f++
  CCE28913.1 155 RELGMTKTLalgkKPGYIKKGFFV 178
                 ******999776655555555554 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2         1   6.1e+03       5      25 ..      11      30 ..       9      35 .. 0.74
   2 ?   11.3   0.0   3.6e-05      0.22      27     108 ..      79     162 ..      41     180 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1
                BB---ECCEETTCEEEEEHHH CS
     Redoxin  5 kaPdftlplaatdgnsvslse 25
                +aP++  p  a+d+++++ s+
  CCE28913.1 11 PAPALA-PAPANDPTPTNSSK 30
                577777.67789999999988 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.6e-05
                 TTSEEEEEEESTTT-HHHHHTHH..HHHTHHHHHHCSTTT..EEEEEESSSHHHHHHHHHTT-TSEEEE-TTSHHHHHTT-TTEEE CS
     Redoxin  27 kgkkvvvnfvpgafcPtCsaehp..yleklaellkekgvd..vvavvadndafvkefwgkeglkfpvlsDgsaaftkalGlrleed 108
                 ++++v+v+f +   c+ C + ++  +   + e l++  v+  +va+ + + a+    ++ ++ +f + +D+sa+++++lG  +++ 
  CCE28913.1  79 QKRRVLVIFIRHFYCGNCHEYLRslAASITPESLSSLPVStsIVAIGCGDPALIDMYVETTKWPFDIYTDPSASLFRELG--MTKT 162
                 356788888888899999998874333333566677777511455566666668888888999*****************..4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1864.72
//
Query:       CCE28914.1  [L=361]
Description: uncharacterized protein CPUR_02604 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2539.84
//
Query:       CCE28915.1  [L=387]
Description: uncharacterized protein CPUR_02605 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2609.30
//
Query:       CCE28916.1  [L=133]
Description: uncharacterized protein CPUR_02606 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1037.14
//
Query:       CCE28917.1  [L=574]
Description: uncharacterized protein CPUR_02607 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4409.41
//
Query:       CCE28918.1  [L=219]
Description: uncharacterized protein CPUR_02608 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1928.39
//
Query:       CCE28919.1  [L=358]
Description: probable SONA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-15   55.3  12.1      0.004   18.0   0.1    6.1  6  WD40         WD domain, G-beta repeat
    4.8e-05   23.6   0.0     0.0069   16.7   0.0    3.4  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.017   14.5   0.0      0.037   13.3   0.0    1.6  2  WD40_like    WD40-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0023        14      13      37 ..      34      61 ..      26      62 .. 0.82
   2 !   17.2   0.0   1.1e-06    0.0067       5      36 ..      73     104 ..      69     106 .. 0.86
   3 !   18.0   0.1   6.7e-07     0.004       9      38 .]     117     149 ..     110     149 .. 0.85
   4 ?   -0.0   0.0      0.32   1.9e+03      13      36 ..     160     187 ..     153     189 .. 0.61
   5 !   14.3   0.8   9.6e-06     0.058       6      38 .]     244     287 ..     240     287 .. 0.76
   6 ?    0.7   0.0      0.19   1.1e+03      12      28 ..     303     321 ..     290     328 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0023
                EEEEEEETTSSE...EEEEETTSEEEEE CS
        WD40 13 vtslafspdgaw...lasGsdDgtvriW 37
                ++sl+fsp  +    la +s+D++vr++
  CCE28919.1 34 ISSLCFSPAANGpdlLAMSSWDKKVRVY 61
                8899999998889976668*******98 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.1e-06
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 +++  H ++v s++fs+dg+ +as++ D+++++
  CCE28919.1  73 HSY-EHaQPVLSCDFSKDGTKIASAGADKNLKL 104
                 667.49899**************9999****98 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 6.7e-07
                 SS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgaw..lasGsdDgtvriWd 38 
                 +H  +++s++f  +ga   ++sGs+D+t++ Wd
  CCE28919.1 117 THnMPIRSCRFFESGANpmIVSGSWDKTIKYWD 149
                 67556999*999999999999***********9 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.32
                 EEEEE....EETTSSEEEEEETTSEEEE CS
        WD40  13 vtsla....fspdgawlasGsdDgtvri 36 
                 vt+++     +   ++ + G+ D+ + +
  CCE28919.1 160 VTCQDrifaMDVKDNLCVIGTADRYINV 187
                 7888555554444444555888998876 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 9.6e-06
                 EEESS.SS..........EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ss..........vtslafspdgawlasGsdDgtvriWd 38 
                 +++ H ++          v++++f+p +  +++++ Dgt ++Wd
  CCE28919.1 244 SFKCHrDPvvngsapcyaVNDISFHPVHGTFSTAGSDGTFHFWD 287
                 566776556555667778999999999999986544*******9 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.19
                 SEEEEEEETTSSEEE..EE CS
        WD40  12 svtslafspdgawla..sG 28 
                 s+t+ afs+ g+ +a   G
  CCE28919.1 303 SITATAFSKTGNIFAyaVG 321
                 499999******9864244 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.1e-06    0.0069       8      73 ..      47     113 ..      37     129 .. 0.89
   2 ?    1.8   0.0     0.051   3.1e+02       9      74 ..     175     241 ..     167     262 .. 0.65
   3 ?   -0.7   0.0       0.3   1.8e+03      40      75 ..     261     296 ..     243     312 .. 0.80
   4 ?   -0.7   0.0       0.3   1.8e+03      35      57 ..     298     320 ..     288     326 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-06
  ANAPC4_WD40   8 DLiAlatedgellvfRlngqrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvv 73 
                  DL+A+ + d++++v+ ++   + ++ ++ ++ + v s  +++dg+ +a a +d +++l+d  s+k v
   CCE28919.1  47 DLLAMSSWDKKVRVYEISAGGLSQGrHSYEHAQPVLSCDFSKDGTKIASAGADKNLKLCDLASQKDV 113
                  9*********************99977789999***************************9988755 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.051
  ANAPC4_WD40   9 LiAlatedgellvfRl.ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvh 74 
                  L  ++t+d  ++v  + n  +++++ ++  + + r ++  +d   +a++  +g++ +  +e+++   
   CCE28919.1 175 LCVIGTADRYINVIDMrNPSKIYKTLQSPLKWQTRVIRCFNDSAGFAIGSIEGRCAIQYIEDKNSSY 241
                  5556666666666554466667777666666666666666777777777777777776666655544 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.3
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                   v++++++p    +  a sdg+ ++ d   ++ ++ 
   CCE28919.1 261 AVNDISFHPVHGTFSTAGSDGTFHFWDKDAKHRLKG 296
                  689999999999999999999999998877766655 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.3
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavay 57 
                  +k ++++++ a+++ g+++a a+
   CCE28919.1 298 PKVGGSITATAFSKTGNIFAYAV 320
                  5678999***********99875 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.2e-06     0.037       2     104 ..      80     185 ..      79     205 .. 0.82
   2 ?    4.6   0.1     0.003        18     205     232 ..     172     199 ..     159     239 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.2e-06
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd...lilvvtlDGtillslle.neeevenekieedistvkviddkll 96 
                 ++ s d+sk+g+ i+  g d+++++++l s++ v iv   +  +  +++ +     +i+ ++ D ti   + +  ++   +   ++ i  ++v d+  +
  CCE28919.1  80 PVLSCDFSKDGTKIASAGADKNLKLCDLASQKDV-IVGTHNMPIRSCRFFESGanpMIVSGSWDKTIKYWDPRqAGNAAATVTCQDRIFAMDVKDNLCV 177
                 68899*************************9987.55666777888888875444489999******7766541455899999**************** PP

   WD40_like  97 iGtnkGsi 104
                 iGt    i
  CCE28919.1 178 IGTADRYI 185
                 ***87665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.003
   WD40_like 205 vddylivGgsfkyllliNiklnvntfkl 232
                  d+++++G    y+ +i ++ +++ +k 
  CCE28919.1 172 KDNLCVIGTADRYINVIDMRNPSKIYKT 199
                 5789999999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2962.09
//
Query:       CCE28920.1  [L=155]
Description: uncharacterized protein CPUR_02610 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1159.34
//
Query:       CCE28921.1  [L=828]
Description: uncharacterized protein CPUR_02611 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-06   26.2   0.0    9.6e-06   25.3   0.0    1.5  1  Peptidase_S41  Peptidase family S41


Domain annotation for each model (and alignments):
>> Peptidase_S41  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   5.4e-10   9.6e-06       1      73 [.     446     588 ..     446     660 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 5.4e-10
                    EEEEEEES-BCC....THHHHHHHHHHHHHHTTSSEEEEE-TTB-EBEHHHHHHHHHCCSSSSEEEEEECTTSEEE.................... CS
  Peptidase_S41   1 kiGyiripsfse....ktkeelakalkelkkknvkglilDlRnNgGGlldeavelaslflddglivstrgrdgkkk.................... 72 
                    ++++i+i+sf+     + +  + ++l+e k+++ k+l++D  nNgGG l   ++  + ++++ +     + + +k+                    
     CCE28921.1 446 DVAVITISSFGPsstvEFQAVIMDFLSECKDAGKKKLVVDFQNNGGGALMLGYDFFRQLFPKTVQEGNSRWKLSKShletarvvsdmvknvdptae 541
                    699*******445567778888888888899*********************99999999987776666666666555666666666666666666 PP

                    ..............................................E CS
  Peptidase_S41  73 ..............................................k 73 
                                                                   
     CCE28921.1 542 gdsdlielsemwlnfrhdmnitnnnflaftdkfsphplketdytalM 588
                    66666666666666555555555555555555555555444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5742.65
//
Query:       CCE28922.1  [L=592]
Description: uncharacterized protein CPUR_02612 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-12   47.3   0.0    4.6e-09   35.2   0.0    3.0  3  FMO-like       Flavin-binding monooxygenase-like
    6.1e-11   42.1   0.0    5.8e-10   38.9   0.0    2.4  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    7.5e-11   41.7   0.3    1.7e-08   34.0   0.0    2.3  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    1.2e-09   37.9   0.0    3.7e-09   36.3   0.0    1.7  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    5.5e-06   26.5   0.2      4e-05   23.7   0.0    2.4  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0005   19.8   0.7      0.042   13.4   0.0    3.0  3  DAO            FAD dependent oxidoreductase
    0.00091   18.5   0.0      0.019   14.2   0.0    2.2  2  Thi4           Thi4 family
  ------ inclusion threshold ------
       0.15   10.8   0.0         14    4.2   0.0    2.2  2  HI0933_like    HI0933-like protein
       0.15   12.6   0.1         29    5.3   0.1    2.5  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.19   11.7   0.0       0.35   10.9   0.0    1.4  1  DUF3506        Domain of unknown function (DUF3506)


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   2.6e-12   4.6e-09       5     203 ..      10     212 ..       6     230 .. 0.80
   2 !    6.0   0.0    0.0019       3.4     293     335 ..     340     383 ..     331     387 .. 0.85
   3 ?    2.2   0.0     0.026        47     352     401 ..     444     496 ..     418     515 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 2.6e-12
    FMO-like   5 aviGaGvsGlasikccleeg.lept.cfersddiGGlwrfkenveeGrasiyksvvsnsskemscfsdfplpedyp.....nflhnsklleylklfake 96 
                  viGaG  Gla+ k+ le   l+ +  +++    GG w         r ++y  + sn  +    f+dfp+ e        ++++ + l  yl  fa  
  CCE28922.1  10 IVIGAGWFGLAAAKTYLELHpLQSIlVLDQDSSCGGTWS--------RDRVYPGLHSNNLRGGYEFPDFPMSEAVNgvregEHIPGEVLHRYLTDFAAA 100
                 699************99954265542678888999*995........789***********************986222225677777899******** PP

    FMO-like  97 fdllkyiqfkttvcsvkkrpdfstsGqwevvtekegkke...savf..davmvctGhhvnphlplesfpGiekfkGqyfhsrdykepe.vf.kgkrvlv 188
                  ++l   ++  +v +v+ +    +   w     +++k e   ++v+    +++ tG   +p++p+  fpG e f   +fh ++  + + v  +  r +v
  CCE28922.1 101 HGILERTRLGVHVDTVEETETEWKVHVWPSLMSEKEKMEeetQEVLrtKRLIIATGLTSQPNMPR--FPGQETFTAPLFHVKELGQQSsVVqSCTRAVV 197
                 ******************99999999998776666665411134541145899***********6..****************866541331568**** PP

    FMO-like 189 iGlGnsggdiavels 203
                 +G+G s+ d a  l+
  CCE28922.1 198 VGVGKSAYDCAYALA 212
                 *********998775 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0019
    FMO-like 293 aGavkvk.ssvkeltetsaifedgtveedidvvifatGytfafp 335
                  G +kv+ s+v  l+   +++ dgt  +++d++i atG+t + p
  CCE28922.1 340 QGRIKVHiSDVACLRGREVLLADGTSLDGVDALICATGWTKQCP 383
                 577777635688899999*********************98877 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.026
    FMO-like 352 ykkvfp...anlekptlaiiGliqplGsilptvelqarwavrvlkG.lkklpse 401
                 y+ + p   ++l + tla  G++ ++ + + ++ +qa w++  + G l++ p++
  CCE28922.1 444 YRFIVPvnaTHLSRRTLAYAGMLSSVSTPI-IATVQALWICAFFDGkLARAPPR 496
                 555555222579***********9987755.4568*******999944556665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   3.2e-13   5.8e-10       1     195 [.      10     225 ..      10     248 .. 0.76
   2 ?   -1.1   0.0       0.5     9e+02     218     271 ..     334     382 ..     328     407 .. 0.75

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 3.2e-13
  Pyr_redox_3   1 iIiGaGPaGlaaaie.lkkagledylilEkg.nignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfel 96 
                  i+iGaG  Glaaa + l+ + l+++l+l+++ + g +++r +    + s +    + e+pd+++ +  +      + e++ ++ + +Yl+  a+ + +
   CCE28922.1  10 IVIGAGWFGLAAAKTyLELHPLQSILVLDQDsSCGGTWSRDRVYPGLHSNN-LRGGYEFPDFPMSEAVNG---VREGEHIPGEVLHRYLTDFAAAHGI 103
                  89***********763677889********9999****9999999998976.56789****987765444...35899**************999998 PP

  Pyr_redox_3  97 ..piklfeeVesvkkedegfev..............etsketyeAkkviiAtGefdkPnklnipGeeklvk...hyskvkefhk..yagqkvvViGgk 173
                    + +l  +V +v++++++ +v              e ++e++++k++iiAtG  ++Pn++++pG+e       h ++  + +    + ++ vV+G +
   CCE28922.1 104 leRTRLGVHVDTVEETETEWKVhvwpslmsekekmeEETQEVLRTKRLIIATGLTSQPNMPRFPGQETFTAplfHVKELGQQSSvvQSCTRAVVVGVG 201
                  556788999*********9999333333333322222456799************************743311133333222221134799******* PP

  Pyr_redox_3 174 nSavDaAlelvrk..gaeVtvvtr 195
                   Sa D A+ l+     ++V++v+r
   CCE28922.1 202 KSAYDCAYALATGerYSRVELVMR 225
                  *****9999875422677888776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.5
  Pyr_redox_3 218 leelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdl 271
                  +++lv++++ikv+   +v  ++ +    +v  +dg++++  d  + atG++ ++
   CCE28922.1 334 VHDLVRQGRIKVHIS-DVACLRGR----EVLLADGTSLDGVDALICATGWTKQC 382
                  667777888887776.67777654....5778999999999********98764 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0045       8.1       2      38 ..       6      42 ..       5      57 .. 0.81
   2 !   34.0   0.0   9.6e-12   1.7e-08     107     226 ..     101     227 ..      80     236 .. 0.82
   3 ?   -4.2   0.1         4   7.2e+03     330     340 ..     368     378 ..     363     379 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0045
  K_oxygenase  2 ilDligiGiGpsnLsLailleevkkelkalflerqpe 38
                  +Dli iG+G + L+ a +  e +   ++l+l++ ++
   CCE28922.1  6 EYDLIVIGAGWFGLAAAKTYLELHPLQSILVLDQDSS 42
                 69**************999888886778899998776 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 9.6e-12
  K_oxygenase 107 sqleeqvrfgeeveevepdeeeee....elltveskd.aegeeeelearnlvlgvG..tepkiPevleklegkervvHsseylerkeellakkriaVv 197
                  + + e+ r g +v++ve  e e +    + l  e+++ +e+++e l++++l++++G  ++p++P +  + + ++ ++H +e+ ++ +  ++  r +Vv
   CCE28922.1 101 HGILERTRLGVHVDTVEETETEWKvhvwPSLMSEKEKmEEETQEVLRTKRLIIATGltSQPNMPRFPGQETFTAPLFHVKELGQQSSVVQSCTRAVVV 198
                  4455668888888888888876554334445556556577778889**********8889******9998889*************99********** PP

  K_oxygenase 198 GsGqSaaeifedllrrqkkvelklvtrse 226
                  G G+Sa + ++ l++ ++ + ++lv+r  
   CCE28922.1 199 GVGKSAYDCAYALATGERYSRVELVMRPG 227
                  **************************976 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 4
  K_oxygenase 330 evdavvlATGY 340
                   vda+++ATG+
   CCE28922.1 368 GVDALICATGW 378
                  589*******7 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0     2e-12   3.7e-09       1     163 [.       7     213 ..       7     226 .. 0.69
   2 ?   -1.7   0.0      0.74   1.3e+03      92     111 ..     352     380 ..     302     390 .. 0.58

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2e-12
                  CSEEEE--SHHHHHHHHHHHH.HTS-EEEE..................E.....TTHCHHHCSHHHHCHHHHHHHHHHHHH................. CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxx..................x.....xxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaq.agakvtlv..................e.....legtclnggcllskallgvaedaeias................. 57 
                  +d++viG+G+ Glaaa+t  + + ++ +lv                  +     l+g   + + ++s+a+ gv+e ++i                   
   CCE28922.1   7 YDLIVIGAGWFGLAAAKTYLElHPLQSILVldqdsscggtwsrdrvypGlhsnnLRGGYEFPDFPMSEAVNGVREGEHIPGevlhryltdfaaahgil 104
                  689**************999988888888878877776666665555514445578888888888888888888888777788999998888888775 PP

                  HHHHCHHHHCCCCHCCT.CEEEEESCEEEEETEEEC..TCEEEEEESEEEE---..EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T...SEEEE CS
                  xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx RF
  Pyr_redox_2  58 evvkklnqgielllgee.vvkidpgkkkvklekkke..gdeekiaydklvlAtG..ssprdlgipGvaenvgklvrtldsaealklkllp...krivv 147
                  e  ++l+ +++++ ++e   k+ + +  +  ek+k   + +e +  ++l++AtG  s+p+ +  pG ++ +  l   ++ +e  ++  +     r+vv
   CCE28922.1 105 E-RTRLGVHVDTVEETEtEWKV-HVWPSLMSEKEKMeeETQEVLRTKRLIIATGltSQPNMPRFPGQETFTAPL---FHVKELGQQSSVVqscTRAVV 197
                  3.35666666666664443444.33334444333323366677888********888**********4444333...3333333333333456789** PP

                  ES-SHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 148 vGgGyiGvElAaalak 163
                  vG G  + ++A ala 
   CCE28922.1 198 VGVGKSAYDCAYALAT 213
                  ************9864 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.74
                  C........TCEEEEEE.SEEEE---EEE CS
                  x........xxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2  92 e........gdeekiay.dklvlAtGssp 111
                  +         d+++++  d+l+ AtG + 
   CCE28922.1 352 ClrgrevllADGTSLDGvDALICATGWTK 380
                  23333333444444443488888888444 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.2e-08     4e-05       1      42 [.      11      55 ..      11      71 .. 0.83
   2 ?   -0.6   0.2      0.91   1.6e+03       1      24 [.     197     222 ..     197     230 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.2e-08
                   EE--SHHHHHHHHH.HHCCTE.EEEEE-SSSSSSGGG-EECE.TT CS
  NAD_binding_8  1 IvGaGlsGlvaAyl.Lakagf.dvlllekrdrlGGraasyev.pg 42
                   ++GaG +Gl+aA + L  + + ++l+l++ +++GG +++ +v pg
     CCE28922.1 11 VIGAGWFGLAAAKTyLELHPLqSILVLDQDSSCGGTWSRDRVyPG 55
                   8***********88355577758**************99988766 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.91
                    EE--SHHHHHHHHHHHC.CTE.EEEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLak.agf.dvll 24 
                    +vG G s+  +Ay+La  +++ +v+l
     CCE28922.1 197 VVGVGKSAYDCAYALATgERYsRVEL 222
                    7999999999*****97334434554 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.4e-05     0.042       1      39 [.       8      49 ..       8      68 .. 0.87
   2 ?    2.6   0.0     0.046        83     145     213 ..      86     166 ..      66     248 .. 0.64
   3 ?   -0.0   0.0      0.29   5.2e+02     119     207 ..     307     382 ..     278     409 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.4e-05
                EEEEECTSHHHHHHH.HHHHHTT...EEEEESSSSTTSSGGGS CS
         DAO  1 dvviiGGGiiGlstA.yeLarrg...VtllekgdiagsgaSgr 39
                d+++iG+G +Gl++A  +L  ++   +++l++++ +g g+ +r
  CCE28922.1  8 DLIVIGAGWFGLAAAkTYLELHPlqsILVLDQDSSCG-GTWSR 49
                789************44555777999*******9999.87655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.046
                 HHHHHHHHHHH.HHHTT-..EEEESECEEEEEEEETCEEEEE........EECT.EEE.E...EEEEEEE--GGGHH.HHHTTCTT CS
         DAO 145 pakltaalara.aealGv..eilegtevtgleeedgkvwgve........rttp.gen.d...aadavVnaaGawsd.llgllkel 213
                 p ++++ ++ + a+a+G+  + ++g  v  +ee++   w+v+        + ++ +e+ +   + + +++a+G+ s+  +   +++
  CCE28922.1  86 PGEVLHRYLTDfAAAHGIleRTRLGVHVDTVEETE-TEWKVHvwpslmseK-EKmEEEtQevlRTKRLIIATGLTSQpNM---PRF 166
                 55555555555366666545566667787776654.458888889999852.333333224443366******9998766...332 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.29
                 HHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE..EECTEEE.EEEEEEEE--GGGHHHH CS
         DAO 119 eevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve..rttpgen.daadavVnaaGawsdll 207
                 +e+r+l+p    ++  +fy++   +  + +++ + + ++++ ++++    v  l     ++ +v   +   g+  d +da++ a+G w+++ 
  CCE28922.1 307 AELRKLQP----WRS-IFYTG-SALGIHNYARNVHDLVRQGRIKVHIS-DVACL-----RGREVLlaD---GTSlDGVDALICATG-WTKQC 382
                 45666666....332.33333.33344444444444444444444444.44444.....123332221...444445799999999.87543 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.1e-05     0.019      17      59 ..       6      48 ..       2      56 .. 0.78
   2 ?    1.7   0.1     0.068   1.2e+02      20      39 ..     195     214 ..     186     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                EEEEEEE--SHHHHHHHH.HHHHCTTS-EEEEESSSS--TTTTT CS
        Thi4 17 esDvvivGaGssGLtaay.ylakkpdlkvailersvspGGGawl 59
                e D++++GaG  GL+aa+ yl  +p   +++l++  s  GG+w 
  CCE28922.1  6 EYDLIVIGAGWFGLAAAKtYLELHPLQSILVLDQDSSC-GGTWS 48
                88**************9835666687778888888666.56775 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.068
                 EEEE--SHHHHHHHHHHHHC CS
        Thi4  20 vvivGaGssGLtaayylakk 39 
                  v+vG G s   +ay la+ 
  CCE28922.1 195 AVVVGVGKSAYDCAYALATG 214
                 599**************975 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0079        14       2      36 ..       8      44 ..       7      45 .. 0.83
   2 ?    4.2   0.0    0.0083        15     128     170 ..     121     163 ..     105     167 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0079
                 SEEEE--SHHHHHHHHHH..HHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisa..akrgkrVlllekakklg 36
                 d+iviG+G  Gl aA +    +  +++l+l++ ++ g
   CCE28922.1  8 DLIVIGAGWFGLAAAKTYleLHPLQSILVLDQDSSCG 44
                 89*************9995556678899999887765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0083
                  -S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-GGG CS
  HI0933_like 128 letevksvekeedgkfrvktkseeeleadklvlAtGGlSiPkl 170
                  +e +v+ + +  ++k +++ +++e l++++l++AtG +S P++
   CCE28922.1 121 TEWKVHVWPSLMSEKEKMEEETQEVLRTKRLIIATGLTSQPNM 163
                  445555555555555566777899***************9986 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.027        48       2      21 ..       9      28 ..       8      43 .. 0.85
   2 ?    5.3   0.1     0.016        29       1      28 [.     194     223 ..     194     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.027
                EEEECSSHHHHHHHHHHHHT CS
   Pyr_redox  2 vvvvGgGyiglElAgalael 21
                ++v+G+G+ gl +A+++ el
  CCE28922.1  9 LIVIGAGWFGLAAAKTYLEL 28
                68************998776 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.016
                 EEEEECSSHHHHHHHHHHHHTT..SEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelg..kkVtvv 28 
                 ++vvvG G ++ ++A ala     ++V +v
  CCE28922.1 194 RAVVVGVGKSAYDCAYALATGErySRVELV 223
                 68****************653223677776 PP

>> DUF3506  Domain of unknown function (DUF3506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00019      0.35      51     103 ..     132     191 ..      96     223 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
     DUF3506  51 ekeedeseeeaekrkeergrleAiKLtGDpnvPr..GevtFva.....edlgeeGlvrva 103
                 ++e+++ eee+++  +++  + A  Lt  pn+Pr  G+ tF+a     ++lg++  v+ +
  CCE28922.1 132 MSEKEKMEEETQEVLRTKRLIIATGLTSQPNMPRfpGQETFTAplfhvKELGQQSSVVQS 191
                 3344445555555555577799***********999*******999999***88776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4322.11
//
Query:       CCE28923.1  [L=435]
Description: uncharacterized protein CPUR_02613 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.15   11.8   0.6       0.39   10.5   0.6    1.7  1  Cupin_2          Cupin domain
        7.5    6.7  19.0       0.69   10.1   9.7    2.3  2  RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc3


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.6   4.4e-05      0.39      23      50 ..     383     412 ..     377     416 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.4e-05
                 EEEEESEEEEE.ECTE.EEEEETTEEEEE- CS
     Cupin_2  23 fyVleGegelt.vdge.eveleaGdsvyfp 50 
                 +y+l Geg+lt + ge +v+++ G +v+ +
  CCE28923.1 383 GYILAGEGKLTgMRGEeRVVVRVGSVVVLE 412
                 69**********887779******999876 PP

>> RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.8     0.026   2.3e+02     200     214 ..      61      75 ..      16      76 .. 0.63
   2 ?   10.1   9.7   7.7e-05      0.69     158     214 ..     189     259 ..     128     264 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.026
  RNA_pol_3_Rpc31 200 eeddefddddedggD 214
                      +ed++ +dd+++++D
       CCE28923.1  61 DEDQDENDDEDEDTD 75 
                      233333333333444 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 7.7e-05
  RNA_pol_3_Rpc31 158 k............eadeedeegkelleklkelaeeeddeeekkekedeeeee......eeeeddefddddedggD 214
                      +            ++  e+e+++ +   l++++e+edd+++   +e++e+++      ee+ed++ ++ d    D
       CCE28923.1 189 RaqdggdvtptggASIAESESASYVGGSLDDREEDEDDQDSRGGGEEDEDDQdsrgggEEDEDEDENESD----D 259
                      1466677777766445777888899999999999999988555555555555566644344333333333....2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 3168.76
//
Query:       CCE28924.1  [L=797]
Description: uncharacterized protein CPUR_02614 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.5e-191  637.6   3.7   1.9e-191  637.2   3.7    1.1  1  DUF3405        Protein of unknown function (DUF3405)
  ------ inclusion threshold ------
        0.1   12.3   0.2       0.22   11.2   0.2    1.5  1  Integrase_DNA  DNA binding domain of tn916 integrase


Domain annotation for each model (and alignments):
>> DUF3405  Protein of unknown function (DUF3405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  637.2   3.7  2.1e-195  1.9e-191       1     517 []     267     780 ..     267     780 .. 0.93

  Alignments for each domain:
  == domain 1  score: 637.2 bits;  conditional E-value: 2.1e-195
     DUF3405   1 cfdRfgRygpYGlgeskkegglgvgeegekegsekvweektekvdwrkvdWgelqerCleaNkeRFkeleeke......................akke 77 
                 c++R +R+gpYGl+e k + g+                 + ++++w++++Wgelq++C+ +N++RF++++ek+                         +
  CCE28924.1 267 CWERDTRLGPYGLHELKIKSGA-----------------SYKSINWDNINWGELQKSCVLQNAARFDTTREKKnpylnnyaetrepagppakqaaL--K 346
                 9**************5555553.................3789*************************888889***************9876431..2 PP

     DUF3405  78 keakeaeekee...kekeaekekkeeeeeeekeekkkkkRtAvvlRtwtgykyteedilnlRalisElsLksGGeYevhllvhvkdeelpiwadeetyq 173
                 +++++ +  ++   ++ ++++   +e++++++++ +k+++tA++lR++tg+kyt++d +++Ral+sElsLk+GG+Yev+llvh k+e+lpi +d++ yq
  CCE28924.1 347 NDRDAPSPGRKiggSQMKRRSVVVSENDNDKRSDVTKEPKTAILLRSYTGKKYTDNDRQVIRALVSELSLKTGGQYEVFLLVHSKNETLPIHQDAALYQ 445
                 22333333333444555566666667777889999**************************************************************** PP

     DUF3405 174 kvleeavpeEfrglatLwsekqmeslYpgleeesftrdlevhgvyrsaflplqlFaqqhpeydyfWnwEmDvRytGhyyelldklsefakkqpRkglwe 272
                 +vl+e+vp Ef+g+++Lw++ qm++lYp++++      + ++ v+ +++l++q F+q+ p++d++WnwEmD+RytGh+y+ll+ ls+fakkqpRk+lwe
  CCE28924.1 446 SVLNEHVPVEFHGITVLWNDPQMWDLYPAMTD------EYARAVHSAQWLSVQKFSQDNPQFDFMWNWEMDFRYTGHHYDLLEGLSAFAKKQPRKYLWE 538
                 *******************************5......57889******************************************************** PP

     DUF3405 273 RnerfYipsvhGswe.dFtqavekqteekgektvwGpvrvkevkplgpkpptseeedkyewGvgEeADlitlnpifdpeettWvlrddvtgyknetea. 369
                 Rner+Yip++hG+++ +F+q+v +++ +   +tvwGp + + ++p+gpkpp s+eed+yewGvgEeAD+it+ p+f+p +++W+++++v+gy++ +++ 
  CCE28924.1 539 RNERYYIPEFHGDYDtSFRQKVAEAHGN---ETVWGPPELPFINPVGPKPPRSHEEDNYEWGVGEEADFITVGPMFNPVDSQWIISKHVWGYTDADHQs 634
                 ***************99*****998887...9************************************************************9966553 PP

     DUF3405 370 .kppRraaiitasrlSrrLLeamheetarkkhtmfsEmvpatvALhhGlKavyaphpvyvdrkwplealekvfnagrkgasggartsvfgkerehnlkg 467
                   +pRr++i+t+sr+S+rLL +mh e++r +++++sEm+++tvAL+hGlK+v+aphpv++dr+w++ +l+++fn g++g+ g +r+s++g++re++++g
  CCE28924.1 635 tDLPRRTTIVTQSRISKRLLAIMHVENMR-GNHVASEMTAQTVALLHGLKTVFAPHPVFMDRDWKGGFLNNWFNPGPHGECG-GRGSPMGWGRERRYQG 731
                 269**************************.****************************************************.9*************** PP

     DUF3405 468 ltwyynsefaeelyrrwlglkeeneGgeeeeeeeegrmclpsmllhpvKe 517
                 +twyy++e +++ly++w+g+ +++ Gg ++e+ ++gr clps++lhp+K+
  CCE28924.1 732 TTWYYRAEPPNRLYNNWMGWPDTDIGGPSWEK-QQGRPCLPSVMLHPIKD 780
                 ********************************.****************6 PP

>> Integrase_DNA  DNA binding domain of tn916 integrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   2.5e-05      0.22      21      46 ..     148     187 ..     140     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.5e-05
  Integrase_DNA  21 kdGrYeYkYtdvlgkrkfvYskkLe..............s 46 
                    k  rY+Yk t +lg+++ +Y ++L+              +
     CCE28924.1 148 KMWRYAYKTTAKLGNSNLIYGNTLKklvaedehteqqkkK 187
                    5569*********************555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5776.83
//
Query:       CCE28925.1  [L=677]
Description: uncharacterized protein CPUR_02615 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-20   73.7  14.7    5.6e-11   42.5   1.9    2.8  3  LIM              LIM domain
  ------ inclusion threshold ------
          3    7.6   6.3       0.46   10.1   0.8    2.4  2  Desulfoferrod_N  Desulfoferrodoxin, N-terminal domain


Domain annotation for each model (and alignments):
>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.2     1e+04      28      35 ..      14      21 ..      13      25 .. 0.65
   2 !   42.5   1.9   6.2e-15   5.6e-11       1      56 [.     455     512 ..     455     514 .. 0.90
   3 !   39.8   1.3   4.5e-14     4e-10       1      57 [.     518     572 ..     518     573 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.2
                B-TTT-SB CS
         LIM 28 tCsdCqke 35
                +Cs C+++
  CCE28925.1 14 KCSLCGNQ 21
                57777665 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 6.2e-15
                 -TTT--BE-TTTEEEEETTE...EEETTTSB-TTT-SB-CTT.CEEETTEEEEHHHHHH CS
         LIM   1 CagCnkkiadrelvlkaldk...vwHeeCFtCsdCqkeLkegsfyekdgklyCkkdylk 56 
                 C++C+  i+ + +  +a ++   ++H++CF+Cs+C+ ++++  fy+  +k+yC++dy+k
  CCE28925.1 455 CKACGIAITGKSIS-SADGRltgKYHKACFVCSTCRAPFSSSVFYVLGDKPYCEQDYHK 512
                 99*******99888.688764447*******************999999********98 PP

  == domain 3  score: 39.8 bits;  conditional E-value: 4.5e-14
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT.CEEETTEEEEHHHHHHH CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegsfyekdgklyCkkdylkk 57 
                 C +C+++i+ +       + ++H +CF+C dC+ +L +g ++e+ g  yC++d +++
  CCE28925.1 518 CGSCKRGIEGQFAE-DEAGVKYHLRCFRCLDCGVSLVDG-YFEVAGYAYCERDAWRR 572
                 9********99999.799*********************.7***********98875 PP

>> Desulfoferrod_N  Desulfoferrodoxin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.8   5.1e-05      0.46       8      22 ..      14      28 ..      10      35 .. 0.80
   2 ?   -1.5   0.5      0.22     2e+03       4      13 ..     540     549 ..     538     552 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 5.1e-05
                     E-TTT--EEEECC-- CS
  Desulfoferrod_N  8 kCevCGniVeVleaG 22
                     kC +CGn Ve+   G
       CCE28925.1 14 KCSLCGNQVEISLMG 28
                     9*********96554 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.22
                      T-EEE-TTT- CS
  Desulfoferrod_N   4 levYkCevCG 13 
                      l  ++C  CG
       CCE28925.1 540 LRCFRCLDCG 549
                      5679*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4672.01
//
Query:       CCE28926.1  [L=537]
Description: probable myo-inositol 1-phosphate synthase (MIPS) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.3e-147  488.9   0.3   8.6e-147  488.7   0.3    1.0  1  NAD_binding_5   Myo-inositol-1-phosphate synthase
    2.2e-44  150.1   0.6    4.5e-44  149.2   0.6    1.5  1  Inos-1-P_synth  Myo-inositol-1-phosphate synthase


Domain annotation for each model (and alignments):
>> NAD_binding_5  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  488.7   0.3  9.5e-151  8.6e-147       1     322 []      82     519 ..      82     519 .. 0.99

  Alignments for each domain:
  == domain 1  score: 488.7 bits;  conditional E-value: 9.5e-151
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5   1 lGvllvGlgGnngtTlvagvlankkglswetkeglkkanylGsvtqsstirlGkdeeegedvyvpikdllplvnpndlvfgGwDisslnlaeamer 96 
                    +G++lvG+gGnngtT++ag++an+++l w+tkeg ++any+Gsv+++st++lG+++++++dv++p++++lp+v+pndlv+gGwDis++nla+am+r
     CCE28926.1  82 VGMMLVGWGGNNGTTVTAGIIANRRNLVWDTKEGPREANYYGSVVMASTMKLGTEAKTNRDVNIPFHKVLPMVHPNDLVIGGWDISKMNLAQAMDR 177
                    79********************************************************************************************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5  97 akvldkdlqeqlkpelekikplksvydkdfiaanqeeradnvlkgk.skleqleqirkdireFkkknkldkvivlwtanTEryievipgvndtlen 191
                    a+vl+++l+  +k+e+++++pl+s+y++dfiaanqe+radnv++g+    +++e++r+dir+Fk+kn+ldkviv+wtanTEry+++i+gvndt++n
     CCE28926.1 178 AQVLEPTLKALVKKEMADLVPLPSIYYPDFIAANQEDRADNVIEGTkACNAHVEKLRQDIRDFKAKNNLDKVIVMWTANTERYADIITGVNDTADN 273
                    *******************************************998467889******************************************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................... RF
  NAD_binding_5 192 llkaikeneeeispstiyavAailegvpyingsPqntlvpglvelAekkgvfiaGdDfKt.................................... 251
                    llk+i++ +ee+spst++avA+ile++p+ingsPqnt+vpg+++lAek+++fi+GdDfK+                                    
     CCE28926.1 274 LLKSIEQGHEEVSPSTVFAVACILENTPFINGSPQNTFVPGAIQLAEKHNAFIGGDDFKSgqtkmksalvdfmisagikltsiasynhlgnndgkn 369
                    ************************************************************************************************ PP

                    ..............................................................................xxxxxxxxxxxxxxxxxx RF
  NAD_binding_5 252 ..............................................................................lLAaPlilDLvllveLaq 269
                                                                                                  lLA+Pli+DLv+l+e+++
     CCE28926.1 370 lsshkqfrskeisksnvvddmveansvlykkgehpdhcvvikympavadnkraldeyyaeiflgghqtismfnicedsLLASPLIIDLVVLAEMMT 465
                    ************************************************************************************************ PP

                    xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5 270 rvevkk.ekkkefkklesvlsllsyflKaPlvskgtkvvnalfkQraalenilR 322
                    r+++k  +++ ++k+++svls+lsy+lKaPl+++gt+vvnal+kQraal+ni+R
     CCE28926.1 466 RIQWKDsTSEGDYKHFHSVLSVLSYMLKAPLTPPGTPVVNALAKQRAALTNIFR 519
                    *****7477899****************************************99 PP

>> Inos-1-P_synth  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.2   0.6     5e-48   4.5e-44       1     109 []     334     447 ..     334     447 .. 1.00

  Alignments for each domain:
  == domain 1  score: 149.2 bits;  conditional E-value: 5e-48
                     SHHHHHHHHHHHHHHTT-EEEEEEEEEEE-HHHHHHTTSHHHHHHHHHHHHHHHHHHHSS--EEE.........EEEEE-GGGTTEEEEEEEEEE CS
  Inos-1-P_synth   1 GqTklksvLaellverglkvksivslNilGnnDgknlseeerfksKkisKssvvddivkanelly.....vdhevvikYvpylgDsKvaldeies 90 
                     GqTk+ks+L+++++++g+k++si+s+N+lGnnDgknls++++f+sK+isKs+vvdd+v+an++ly     +dh+vvikY+p++ D+K+alde+ +
      CCE28926.1 334 GQTKMKSALVDFMISAGIKLTSIASYNHLGNNDGKNLSSHKQFRSKEISKSNVVDDMVEANSVLYkkgehPDHCVVIKYMPAVADNKRALDEYYA 428
                     9********************************************************************************************** PP

                     EEGGGEEEEEEEEEEEEH. CS
  Inos-1-P_synth  91 eiflggkntielkleceDS 109
                     eiflgg++ti++ + ceDS
      CCE28926.1 429 EIFLGGHQTISMFNICEDS 447
                     ******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3559.87
//
Query:       CCE28927.1  [L=1352]
Description: related to URK1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-41  141.7  20.1    2.2e-41  141.7  20.1    8.2  7  MRC1      MRC1-like domain
  ------ inclusion threshold ------
        6.2    7.3   6.3       0.83   10.1   0.2    2.8  3  DUF3357   Domain of unknown function (DUF3357)


Domain annotation for each model (and alignments):
>> MRC1  MRC1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   4.3      0.68   6.1e+03      87     104 ..     147     163 ..     109     170 .. 0.47
   2 ?   -9.0  13.2         2   1.8e+04      39     118 ..     209     275 ..     193     299 .. 0.36
   3 ?   -4.7   8.4         2   1.8e+04      78     108 ..     547     579 ..     518     591 .. 0.39
   4 ?   -8.3  24.6         2   1.8e+04      15     107 ..     583     669 ..     572     675 .. 0.52
   5 ?   -1.2   0.6       0.3   2.7e+03      81     125 ..     867     916 ..     865     922 .. 0.51
   6 !  141.7  20.1   2.5e-45   2.2e-41       1     145 [.     924    1062 ..     924    1063 .. 0.96
   7 ?   -2.3   1.6      0.66   5.9e+03     101     108 ..    1176    1183 ..    1159    1197 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.68
        MRC1  87 RkrrrraggndldlsDsD 104
                 R+rrr a + d +l+Ds+
  CCE28927.1 147 RQRRR-AAATDTQLNDSE 163
                 22222.223333333333 PP

  == domain 2  score: -9.0 bits;  conditional E-value: 2
        MRC1  39 eleeliDdesedeevdkdelaaekakeereeDdkevekllkdittGglRkrrrraggndldlsDsDdee.aelrrrkrrrr 118
                   + l++ ++  +e  ++e+a+e  k er + +++++  ++ i++           + d+++   Dde  ++l +++r  r
  CCE28927.1 209 RFQLLVERKR--QERLAREAAEEARKAERWAQQEKLNSEMELIASD----------DGDIGIT--DDEGgRRLTQQARPTR 275
                 3333332222..3333333333333333333333333333333221..........3344444..4444333333333333 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 2
        MRC1  78 lkdittGglRkrrrr.ag.gndldlsDsDdee.a 108
                 +k+ ++ + R r+++ +g  + l  +Ds+dee +
  CCE28927.1 547 IKETEQDEAR-RQGKaKGeVDPLAWDDSEDEEyR 579
                 1222333344.33332222223344488888842 PP

  == domain 4  score: -8.3 bits;  conditional E-value: 2
        MRC1  15 eSeDeyaGlggvsdeeeedeeddaeleeliDdesedee..vdkdelaaekakeereeDdkevekllkdittGglRkrrrraggndldlsDsDdee 107
                 e++     + g + +e    ++dae e+  D+++  +    d++e aa  ++ ++eeDd ++e+  + +t  + R+rr+  ++    ls  Dde+
  CCE28927.1 583 EEDAAEVEISGSEIDEM---DEDAEEEQVQDENAAGHVlfDDEAESAASEHEAQEEEDDDDDEE-ERVVTRPAARQRRA--RKTTTVLS--DDED 669
                 22222233333333333...23334455555555444454446666666666666666665555.46788889998886..23444666..5544 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.3
        MRC1  81 ittGglRkrrrraggndldls.DsDdee......aelrrrkrrrrekkrkal 125
                 + +G+lR rr        + s D+D         ++lr  + + +++ rk l
  CCE28927.1 867 VRKGRLR-RRMDM-STAAEASrDADAPSaqadafEALRGGAAAANKESRKSL 916
                 6789999.77532.34445554554333223334445555555555555554 PP

  == domain 6  score: 141.7 bits;  conditional E-value: 2.5e-45
        MRC1    1 kkkkasefveeeAeeSeDeyaGlggvsdeeeedeeddaeleeliDdesedeevdkdelaaekakeereeDdkevekllkdittGglRkrrrraggnd 97  
                  kk+ka+ +vee+AeeSeDeyaG+ggv++e+++de++  ++e++i+d++  ++vd+++laa++a++er++D+k+vekl+kd  +G+lR r+r   g+d
  CCE28927.1  924 KKSKAKGLVEEQAEESEDEYAGIGGVDGEDSDDESNG-SVEDMINDAA-GNDVDERKLAAFHADQERAQDEKQVEKLFKDLSKGMLR-RKR---GAD 1014
                  699****************************999888.*********9.**************************************.665...79* PP

        MRC1   98 ldlsDsDdeeaelrrrkrrrrekkrkalledekleklaknpkakAFvk 145 
                  +dlsDsD + ++++r+krr+++k++kal +de+++k+a+np ++AF++
  CCE28927.1 1015 FDLSDSDSDGEARKRMKRRQFAKMQKALFSDERVKKIAENPGNQAFLR 1062
                  ********9999**********************************98 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 0.66
        MRC1  101 sDsDdeea 108 
                  +D+D++e+
  CCE28927.1 1176 EDEDEDED 1183
                  22222221 PP

>> DUF3357  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.95   8.5e+03      46      91 ..      57     101 ..      51     113 .. 0.55
   2 ?   -3.2   0.1       1.3   1.2e+04      11      28 ..     643     663 ..     638     665 .. 0.65
   3 ?   10.1   0.2   9.3e-05      0.83      54      92 ..    1095    1133 ..    1078    1144 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.95
     DUF3357  46 rlagqaslvapgevavsetaesvsaaveetaSRGv....eaGVSeKssga 91 
                 + a ++s + p +   s++a     ++++ ++RG+     +GV + ++ga
  CCE28927.1  57 HRAHDNSSPSPVHDDESDDA-----VTVMNRPRGKlasrMQGVQDMTKGA 101
                 55555555555555555554.....4446666665211145666655555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.3
     DUF3357  11 a...aaaaaararrpllaavl 28 
                 +     ++aar+rr+ +++++
  CCE28927.1 643 EervVTRPAARQRRARKTTTV 663
                 234667899999997666555 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 9.3e-05
     DUF3357   54 vapgevavsetaesvsaaveetaSRGveaGVSeKssgaa 92  
                   +++e++ ++ + +v +  +++aSRG + G SeK s  a
  CCE28927.1 1095 DDDKENRTQGASSAVIPDSQAHASRGLSIGLSEKHSLRA 1133
                  34566777777777788888**************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1760  (0.098165); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.33u 0.31s 00:00:01.64 Elapsed: 00:00:00.51
# Mc/sec: 7923.76
//
Query:       CCE28928.1  [L=328]
Description: related to methyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-25   89.5   0.0    3.1e-25   88.9   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    1.2e-11   45.1   0.0    2.8e-11   44.0   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    3.2e-09   37.3   0.0    8.2e-09   36.0   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    5.9e-09   36.6   0.0    3.9e-08   33.9   0.0    2.3  1  Methyltransf_12  Methyltransferase domain
    1.2e-07   31.7   0.0      3e-06   27.1   0.0    2.2  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.023   14.0   0.0        0.2   10.9   0.0    2.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.026   13.8   0.0      0.043   13.1   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
      0.027   14.2   0.0        1.2    8.8   0.0    2.2  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.031   13.7   0.0      0.053   12.9   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.036   13.6   0.0      0.065   12.8   0.0    1.4  1  MTS              Methyltransferase small domain
      0.038   14.1   0.0      0.072   13.2   0.0    1.4  1  FtsJ             FtsJ-like methyltransferase
      0.044   13.5   0.0      0.072   12.8   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0     2e-28   3.1e-25       8     163 ..      72     245 ..      65     247 .. 0.81

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 2e-28
  Methyltransf_23   8 elsdklerllpklraggrvLdiGcGtGillevl..rengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp 99 
                      ++ d  ++l+p ++ag+r+LdiG+GtG ++  +  ++ g+s+tg Dlsp++ +++  + + ++   d + ++++ +++d+I++r++  +++++p
       CCE28928.1  72 RILDDKLFLAPINPAGMRILDIGTGTGLWSITMgdAYPGASITGNDLSPIQPDWV--PTNVKFIVDDIELDWFQYNRYDYIHCRYMAASIKNWP 163
                      4555566799***********************7666699**************8..7777777777889************************ PP

  Methyltransf_23 100 ellrqiatllkpgGylllseplasl...............kedrllldw.lylvpag..rhisffsarslkelleeaGlevv 163
                      +l+rqi++ lkpgG+++++e  +s                +  + +l+  +++++a   + + +    +l++++ eaG+  v
       CCE28928.1 164 RLVRQIYSALKPGGWVEFQEMSSSYytiagadeavplakyHPSHPFLQLsEAMREACfkTGRMLDPTGHLRRWASEAGFVAV 245
                      ********************98887888888777777775334445554456666556556666667788888888888766 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   1.9e-14   2.8e-11       1      97 []      90     177 ..      90     177 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 1.9e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      +Ld+G+GtG +++ + ++++ a++tg D+s+ + + + +++       +f++ d+e   f+ +++D+++++++    s +++++++++i+++Lk
       CCE28928.1  90 ILDIGTGTGLWSITMGDAYPGASITGNDLSPIQPDWVPTNV-------KFIVDDIELDWFQYNRYDYIHCRYM--AASIKNWPRLVRQIYSALK 174
                      8******************55************99887765.......9******9999***********866..455679************* PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       CCE28928.1 175 PGG 177
                      **9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   5.5e-12   8.2e-09       1      94 [.      91     179 ..      91     181 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 5.5e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+G+GtG+ +  + +++  a+++g Dls+ + +++         +v+f+v d+e l  f+ n +D + ++ +   ++++ +++++i+  Lkpg
       CCE28928.1  91 LDIGTGTGLWSITMGDAYpgASITGNDLSPIQPDWVP-------TNVKFIVDDIE-LdWFQYNRYDYIHCRYMAASIKNWPRLVRQIYSALKPG 176
                      8**************99999*************9992.......24889******.636*********************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE28928.1 177 GWV 179
                      *97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   2.6e-11   3.9e-08       1      99 []      91     179 ..      91     179 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 2.6e-11
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..ssfDlvvasnvlhhlkdirevldnirkl 92 
                      L+iG+GtG  +  + ++ p++++tg D+sp +         ++ +   +nv++ ++d++ +     + +D++++      +k++ +++++i+++
       CCE28928.1  91 LDIGTGTGLWSITMGDAYPGASITGNDLSPIQP--------DWVP---TNVKFIVDDIELDW-FqyNRYDYIHCRYMAASIKNWPRLVRQIYSA 172
                      8*****************************999........4443...44555555543333.2356*************************** PP

  Methyltransf_12  93 LkpgGrl 99 
                      LkpgG++
       CCE28928.1 173 LKPGGWV 179
                      *****85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     2e-09     3e-06       4     113 ..      87     185 ..      85     219 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2e-09
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileei 97 
                      g+r+lD+G+GtG  ++ +   ++p+a ++G D s+  i+           +nv+F + die     ++ +++D+i+++   + +++ +   ++i
       CCE28928.1  87 GMRILDIGTGTGLWSITMG-DAYPGASITGNDLSP--IQPDWV------PTNVKFIVDDIELDW--FQYNRYDYIHCRYMAASIKNWPRLVRQI 169
                      79*****************.99************9..666666......78*********9833..66689*********************** PP

  Methyltransf_31  98 ervlkpggilliedpr 113
                       ++lkpgg +  ++++
       CCE28928.1 170 YSALKPGGWVEFQEMS 185
                      ********88777766 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014       0.2      48     157 ..      87     187 ..      61     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
                      TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  48 gakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                      g ++lD+ +Gtg +++++ d+      +++ D+++           +   +n++f++ + e   f+ + +D++   +    + + ++ ++++y 
       CCE28928.1  87 GMRILDIGTGTGLWSITMGDAY-PGASITGNDLSPIQ--------PDWVPTNVKFIVDDIELDWFQYNRYDYIHCRYMAASIKNWPRLVRQIYS 171
                      5667777777777777766653.44456666666532........2334568999998887777899*************************** PP

                      HEEEEEEEEEEEE--- CS
  Ubie_methyltran 142 vlkpGGrlvvlefskv 157
                       lkpGG +   e+s  
       CCE28928.1 172 ALKPGGWVEFQEMSSS 187
                      ********99999865 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.9e-05     0.043      51     164 ..      71     181 ..      47     200 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.9e-05
                 HHHHHTTTT--T....T-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGTSGGG CS
        CMAS  51 ldlileklelkp....GmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrvdeldlerkvevklldyedldekvdrvvsvgafehvgken 144
                 ++++ +kl l p    Gm++LdiG+G G   +++ + y ++++ g  lS  q  ++  +v+ +   ++ e++  +y    +++d +    +      +n
  CCE28928.1  71 TRILDDKLFLAPinpaGMRILDIGTGTGLWSITMGDAYpGASITGNDLSPIQPDWVPTNVKFIV--DDIELDWFQY----NRYDYIHCRYMAAS--IKN 161
                 4444455555433335***************99999997899*******999999999888764..4444444444....36777776666544..467 PP

                 HHHHHHHHHHHS-TT-EEEE CS
        CMAS 145 ydtffkklkkllkedGllll 164
                 +++ +++++++lk++G +  
  CCE28928.1 162 WPRLVRQIYSALKPGGWVEF 181
                 77777777777777777655 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0008       1.2      73      89 ..      86     102 ..      66     108 .. 0.83
   2 ?    3.1   0.0     0.046        69     124     167 ..     128     177 ..     111     180 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0008
                 TT-EEEEES-TTSHHHH CS
        PCMT  73 kgarvLevGsGsGylta 89 
                 +g+r+L++G+G+G  + 
  CCE28928.1  86 AGMRILDIGTGTGLWSI 102
                 59***********8765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.046
                 CSEEEEES-GGGTTGGG-SEEEEEE...SSBBSS--H...HHHHTEEEEE CS
        PCMT 124 envivvvgDGrkGyeekaPYdaihv...gaaapeiPe...alidQLkeGG 167
                 +nv+++v D +  + ++  Yd ih    +a+ ++ P+   ++   Lk+GG
  CCE28928.1 128 TNVKFIVDDIELDWFQYNRYDYIHCrymAASIKNWPRlvrQIYSALKPGG 177
                 49*********************962214555666641113444567777 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.5e-05     0.053     161     256 ..      86     179 ..      72     182 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.5e-05
        PrmA 161 egeevlDvGtGSGiLaiaaa.kLgakkvvavDiDevAvkvakeNaelNkveaklevalseellkeekadvivaNILaevli...elaedikklvkeggl 255
                 +g ++lD+GtG+G+ +i        +++++ D+ ++  +    N+++  + + +e     + ++ +++d i +  +a  +    +l+ +i++++k+gg+
  CCE28928.1  86 AGMRILDIGTGTGLWSITMGdAYPGASITGNDLSPIQPDWVPTNVKF--IVDDIE----LDWFQYNRYDYIHCRYMAASIKnwpRLVRQIYSALKPGGW 178
                 57799************9751455679****************9997..555554....47778789***********99844469************9 PP

        PrmA 256 l 256
                 +
  CCE28928.1 179 V 179
                 7 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.3e-05     0.065      26      64 ..      82     119 ..      69     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
                 HCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  26 tlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                  ++  +  ++lD+G+G+G+ ++++ +++p a++t  d +
  CCE28928.1  82 PINP-AGMRILDIGTGTGLWSITMGDAYPGASITGNDLS 119
                 4444.5678***********************9988865 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.8e-05     0.072      21      71 ..      86     138 ..      64     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.8e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CC CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgdit 71 
                  g++++D+g ++G ws  +     +++ + + Dl p++p     +v++i  di 
  CCE28928.1  86 AGMRILDIGTGTGLWSITMGDAY-PGASITGNDLSPIQPDwvpTNVKFIVDDIE 138
                 6799******************6.57***********9887889****999985 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.8e-05     0.072      46      91 ..      86     132 ..      66     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.8e-05
  Methyltransf_16  46 sklsvlELGsGtGlvGlavaellpeakviltDleell.ellkkniel 91 
                      +++++l++G GtGl  +++  ++p+a+++  Dl+ ++ + + +n++ 
       CCE28928.1  86 AGMRILDIGTGTGLWSITMGDAYPGASITGNDLSPIQpDWVPTNVKF 132
                      6789****************************999652567777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2538.56
//
Query:       CCE28929.1  [L=441]
Description: probable CDS1-CDP-diacylglycerol synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-78  263.0  23.7    4.6e-78  262.7  23.7    1.1  1  CTP_transf_1  Cytidylyltransferase family


Domain annotation for each model (and alignments):
>> CTP_transf_1  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.7  23.7   2.5e-82   4.6e-78       2     266 .]      55     386 ..      54     386 .. 0.99

  Alignments for each domain:
  == domain 1  score: 262.7 bits;  conditional E-value: 2.5e-82
                   HHHHHHHHHHHHHHHTTTSH.HHHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHH....HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHH---. CS
  CTP_transf_1   2 qRvitalvlilivliilllgglvflllvavvvilalkElirlvrlkkrekrllll.llslvlllllllflylesliallklvlllvlvllllvlkvl 97 
                   +R  +++ ++++++ +l++g+++++++v++++i+ +kE+i+++++ +r+++l  +  l++++l ++++fly+es+i ++k+++l+++vll l++   
    CCE28929.1  55 TRAFWTMCMLALFFSALFIGHIYVIIIVTAIQIISFKEVIAIANVPSRARSLRSTkSLNWYWLATTMYFLYGESVIYYFKHIVLVDKVLLPLAT--- 148
                   799****************************************************************************************999... PP

                   ..HHHHHHHHHHHHHHHHHTHHHH............................TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---B-S-TT CS
  CTP_transf_1  98 kskskklervilallallyvvlll...........................qslllienikeglllvllllalvvaaDigaYffGklfGktkllpki 167
                         ++r+i+++l+++++v+++                           q++++++n +eg+++++l+ alv+++Di+aY++G++fG+t  l+k+
    CCE28929.1 149 ------HHRFISFILYVFGFVFFVaslqaghykfqftnfawthmalylivvQAHFVMNNVFEGMIWFFLPAALVITNDIFAYICGIAFGRT-QLIKL 238
                   ......8************************************************************************************.***** PP

                   S---BHHHHHHHHHHHHHHHHHHHHHHHCTS.................................................---TTSHHHHHHHHHHH CS
  CTP_transf_1 168 SPkKTveGfigGlvaavvvglllalvlskal.................................................alsllhllllslllslv 215
                   SPkKTveGf+g+++++v++g++l +++s+++                                                 a++++h+++l+ ++sl+
    CCE28929.1 239 SPKKTVEGFVGAWITTVLFGTILVNLMSRSKyficpvndlgatvftglecdpnpvfiartyhmpelfflppklanlsftfAPIQIHTFVLASFASLI 335
                   ****************************999****************************************************************** PP

                   HHHHHHHHHHHHHHHT-SSS-S-SSSSS-HHHHHHHHHHHHHHHHHHHHHH CS
  CTP_transf_1 216 avfGDLveSglKRafgiKDsGkliPGhGGilDRlDsllfaapvvylllelf 266
                   a+fG++++SglKR+f+ KD+G++iPGhGG++DR+D++++++ ++y+++++f
    CCE28929.1 336 APFGGFFASGLKRSFKLKDFGDSIPGHGGMTDRMDCQFIMGFFAYMYYHTF 386
                   ************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3356.54
//
Query:       CCE28930.1  [L=807]
Description: related to uvs-3-[Neurospora crassa] [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-44  149.0   0.1    1.4e-43  148.3   0.1    1.4  1  DUF3636      Protein of unknown function (DUF3636)
     0.0026   17.3   0.5     0.0045   16.5   0.5    1.3  1  Golgin_A5    Golgin subfamily A member 5
  ------ inclusion threshold ------
      0.034   14.1   2.9      0.068   13.1   2.9    1.4  1  CortBP2      Cortactin-binding protein-2
       0.36   11.1   3.3        1.1    9.5   3.3    1.8  1  TMF_TATA_bd  TATA element modulatory factor 1 TATA binding


Domain annotation for each model (and alignments):
>> DUF3636  Protein of unknown function (DUF3636)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3   0.1   3.2e-47   1.4e-43       1     147 [.     530     680 ..     530     681 .. 0.97

  Alignments for each domain:
  == domain 1  score: 148.3 bits;  conditional E-value: 3.2e-47
                 -HHHHHHHHHHHHHHHS-----........HHHHHHSS-HHHHHHHTSTTS-HHHHHHHHHHGGGG--SS-SS----.HHHHHHHHHHHHHHHHHHHHH CS
     DUF3636   1 dvtecLelLylaAlgclsssea........ierFWrlieldfvllmLskkqplediilmLelLstSvlpdsfGpiss.eeedqkavekaiidrvsnlLt 90 
                 d+ + L+lLy  A++c++++ +           FWrl++ld+vll+L++kq++ d+i+mL+lL tSvlp+s+Gp+s+ +  + ++v+kai++rvs+ Lt
  CCE28930.1 530 DTGQLLRLLYVSAVSCSMEPTEtengfeytSIAFWRLMPLDMVLLLLTPKQKPGDVIGMLDLLGTSVLPTSIGPVSTpDMGSCEDVAKAIVERVSAKLT 628
                 7899************9999999******999********************************************977899***************** PP

                 S--T....TS-TTSHHHHHHHHHHHHHHHHHHHSHHHHHHHHH-SSHHHHHHHHHHH CS
     DUF3636  91 eepradegeakvteaeilelrleaLrvLtafarspfgslalashdsaigRlvrvLsd 147
                 e+ r      ++t++++ ++rl+aLr+L+af++spfg+l+lashd+ai+Rlv++Ls 
  CCE28930.1 629 EQSR-----LPMTSHTKRSIRLAALRTLIAFSTSPFGALHLASHDNAIPRLVHCLSA 680
                 ****.....9*********************************************85 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.5     1e-06    0.0045     136     235 ..     194     299 ..     189     317 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1e-06
   Golgin_A5 136 tlqsrikdrekeieklrnq...lttkslssssesele...sRlkqLtesLiqKQt.vlEalsteknslvlQLeRleqqikevqseaengtalnlesvsd 227
                  lq r++  e+e+ + r +   l  ksl+    +e +   +Rlk+L    i KQt ++Ea  +  +s    L+ l+q+i+evq+ ++++ a   +s+++
  CCE28930.1 194 ALQRRVRVLESELHSARGEasiLRAKSLKAQ--QEYDgqvARLKKLNADQIDKQTrMVEAAVAAEKSANTELQFLQQDIREVQGRTRRKDAPGGSSATT 290
                 5788889999999998876222445555544..44432248*************9789*98888889999***************99988877776554 PP

   Golgin_A5 228 e.egsrlrk 235
                   + +r r+
  CCE28930.1 291 PrKAARSRE 299
                 314445554 PP

>> CortBP2  Cortactin-binding protein-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.9   1.5e-05     0.068      41     132 ..     180     280 ..     171     282 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
     CortBP2  41 learygskvnlsdplqALqRDs...........elaksketsesevkklyekqlaeLekliekqreaqermleqLaaaekrhrkvleeLeeekrkheed 128
                 ++++ g++    d+l+ALqR               a+  + ++ + ++ y+ q+a L+kl + q + q rm+e  +aaek+ ++ l+ L+++ r+ +  
  CCE28930.1 180 QSSQAGFA--GGDVLSALQRRVrvleselhsarGEASILRAKSLKAQQEYDGQVARLKKLNADQIDKQTRMVEAAVAAEKSANTELQFLQQDIREVQGR 276
                 44555533..46999999999977777666655222223333444555666************************************999998887777 PP

     CortBP2 129 taqg 132
                 t+++
  CCE28930.1 277 TRRK 280
                 6665 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.3   0.00024       1.1      12      68 ..     190     246 ..     179     274 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00024
  TMF_TATA_bd  12 qlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkelee 68 
                   +++ l+ ++r lE+El+s++ e + l a+  +a++e    +++  +l++ + + ++
   CCE28930.1 190 DVLSALQRRVRVLESELHSARGEASILRAKSLKAQQEYDGQVARLKKLNADQIDKQT 246
                  68899********************************99999888888765543333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.40
# Mc/sec: 6022.55
//
Query:       CCE28931.1  [L=631]
Description: probable UDP-glucose 6-dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-49  167.0   0.0    6.8e-31  107.3   0.0    2.3  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
    1.2e-31  108.7   0.0    2.6e-31  107.7   0.0    1.6  1  UDPG_MGDP_dh     UDP-glucose/GDP-mannose dehydrogenase family
    1.7e-22   79.8   0.0    1.4e-17   64.0   0.0    3.2  3  UDPG_MGDP_dh_C   UDP-glucose/GDP-mannose dehydrogenase family
  ------ inclusion threshold ------
      0.098   12.9   0.0       0.26   11.5   0.0    1.7  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   2.9e-19   1.3e-15       2      70 ..      36     105 ..      35     115 .. 0.86
   2 !  107.3   0.0   1.5e-34   6.8e-31      58     184 ..     125     251 ..     111     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 2.9e-19
                     EEEEE--STTHHHHHHHHHHCT..SEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-H CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeig..hevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdv 70 
                     +i+++G+GYvG++taav+a +   ++v++vD d  +++ +ns + piyepgL+++v+ a++ g  sft   
      CCE28931.1  36 TICCVGAGYVGGPTAAVIAFQNpsIKVTVVDRDVVRIRRWNSRHPPIYEPGLHDIVRVARD-GSRSFTYVN 105
                     79****************988777***********************************94.555555433 PP

  == domain 2  score: 107.3 bits;  conditional E-value: 1.5e-34
                     HCHTTTEEEES-HHHHHHC-SEEEE-----B-T....TTTCB-THHHHHHHHHHHHHHHCEEEEEE-S---TTHHHHCHHHHHHHHCSS-TTCEE CS
  UDPG_MGDP_dh_N  58 avesgrlsfttdvekaveeadvifiaVgTPskk....kgkaaDlkyvesaarsiaealkkgkvvvvkSTvpvgtaeelvkkileeaskkkgvdfd 148
                     ++   +l+fttdv +++ eadv+++aV+TP+k+    +g+a+D+++ e+++  +a+++++g ++v+kSTvp +ta+ lv   l +++   gv+f+
      CCE28931.1 125 CR-PANLFFTTDVATSIGEADVVLVAVNTPTKDrgagAGSATDMTAFEAVTAVVAQYAREGAIIVEKSTVPCRTAQ-LVADTLSMHRP--GVHFE 215
                     44.579***************************99999999**********************************9.55555554443..689** PP

                     EEE------TTSHHHHHHS-S-EEEEESSCHHHHHH CS
  UDPG_MGDP_dh_N 149 vvsnPEflregsavkdllnpdrvviGveekkaeaal 184
                     ++snPEfl  g+avkdll pdr++iG  ++++++++
      CCE28931.1 216 ILSNPEFLSAGTAVKDLLYPDRILIGSAPTPSGKKA 251
                     *****************************9998544 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0   5.8e-35   2.6e-31       1      93 [.     274     368 ..     274     369 .. 0.98

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 5.8e-35
  UDPG_MGDP_dh   1 etAEliKlaaNaflatkIsfiNelanlcealgidveeVieavgldprigpkflkpglGvGGsclpkDvkaLvalaeelgle..aelleavrevNe 93 
                   +++El+Kl+aN++la+++s iN+++++ce++g+dv+eV++avg dprig+kfl +g+G+GGsc++kDv +Lv+lae+ gl+   e++++v+++N+
    CCE28931.1 274 WSSELAKLVANSMLAQRVSSINSISAVCEQTGADVDEVARAVGVDPRIGNKFLMAGIGFGGSCFKKDVLNLVYLAETMGLPevGEYWRQVVKMND 368
                   589******************************************************************************989**********8 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.62   2.8e+03      52      76 ..     128     152 ..     102     157 .. 0.72
   2 !   64.0   0.0   3.2e-21   1.4e-17       1      82 [.     392     482 ..     392     491 .. 0.93
   3 !   11.8   0.0   5.7e-05      0.25      81     104 ..     587     611 ..     563     612 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.62
                     TCCEEES-CHHHHTT-SEEEE-S-- CS
  UDPG_MGDP_dh_C  52 kgvevvdsleealkgadaivilteh 76 
                      ++ +++++++ + +ad+++++++ 
      CCE28931.1 128 ANLFFTTDVATSIGEADVVLVAVNT 152
                     46778889999999*****999875 PP

  == domain 2  score: 64.0 bits;  conditional E-value: 3.2e-21
                     EEE-SSSSTT-S--TT-HHHHHHHHHHHC.TSEEEEE-SSTHHCCCCHHGG........BTCCEEES-CHHHHTT-SEEEE-S--GGGGGS CS
  UDPG_MGDP_dh_C   1 ailGlafKkdtdDlReSpaldiieeLlee.gaevkiyDPkvkeeaveaele........ekgvevvdsleealkgadaiviltehdefkel 82 
                     +ilG afKk+t D+Re+pal++i++Llee   +v ++DP +++  +++e +         ++++v  ++++a+ ga a+vi+te def+++
      CCE28931.1 392 TILGYAFKKNTSDTREAPALEMIKTLLEErPRQVAVFDPCCNPLVIKEEIKatlgplaaGNNISVHGNAYDACYGATAVVIATEFDEFRNQ 482
                     59************************9993456**************9999********88****************************95 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 5.7e-05
                     GS-HHHHHHCC.SS-EEEESSS-CC CS
  UDPG_MGDP_dh_C  81 eldlaklkelm.kpavvfDgrnvld 104
                      ld+ ++++ m kp++vfDgr+v+d
      CCE28931.1 587 RLDWVRIAADMaKPRWVFDGRGVID 611
                     47*********************98 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.8e-05      0.26       1      36 [.      37      71 ..      37      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.8e-05
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHH CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskek 36
                     + ++GaG+vG ++a ++a +++   ++tv+dr+  +
       CCE28931.1 37 ICCVGAGYVGGPTAAVIAFQNPS-IKVTVVDRDVVR 71
                     6789*************988765.3*******9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 4814.73
//
Query:       CCE28932.1  [L=528]
Description: uncharacterized protein CPUR_02622 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-36  123.9   0.0      1e-35  122.8   0.0    1.6  2  Glycos_transf_1  Glycosyl transferases group 1
    4.7e-29  101.5   0.1    7.4e-29  100.9   0.1    1.3  1  Glyco_trans_1_4  Glycosyl transferases group 1
    1.6e-14   54.6   0.0    1.1e-13   52.0   0.0    2.2  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    5.9e-13   49.2   0.0    5.4e-11   42.8   0.0    2.3  2  Glyco_transf_4   Glycosyltransferase Family 4
    5.8e-11   42.6   0.0    1.2e-10   41.7   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.1   3.9e+03     128     163 ..     205     240 ..     201     243 .. 0.80
   2 !  122.8   0.0   2.8e-39     1e-35       5     171 ..     243     411 ..     239     412 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
                      CHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHH CS
  Glycos_transf_1 128 aevvkdgetGllvkpnnaealaeairklledeelre 163
                      +  vk + t+ ++++n+ e l ++++  l d++lr+
       CCE28932.1 205 SRFVKRYLTKNHIQANKLELLTRGVNTQLFDPNLRR 240
                      567888889999999999999999998888887776 PP

  == domain 2  score: 122.8 bits;  conditional E-value: 2.8e-39
                      HHHHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES....STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESE CS
  Glycos_transf_1   5 krkklgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG...ngeeekelkklaeelelsdnviflgevsredleellknadi 95 
                      + +k+ +++++ i+++v+r+  eKg+d l +++++l ++   +++l i+G   n + eke+++l e l  + +vif g++  edl + + + d+
       CCE28932.1 243 QLRKELAPNGEIIFVTVSRIAGEKGFDFLAEVAKELDAR-GLDFQLYIVGgnrNADVEKEIQELFEPLARRGKVIFAGFQVGEDLATAYASGDV 335
                      567888999***************************887.*************999************************************** PP

                      EEEEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHHH CS
  Glycos_transf_1  96 fvlpsisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenark 171
                      f++ s +E fG+v+lEAma+glpv+a + ggp+++v++g+tG+lv+p +   ++++  +l +d +lrer++++ar+
       CCE28932.1 336 FLHCSVTETFGLVVLEAMASGLPVVARDEGGPSDIVQHGDTGFLVPPRDLRGFVAKAVELAQDTQLRERMSRRARE 411
                      **************************************************************************97 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.1   2.1e-32   7.4e-29       3     134 .]     255     398 ..     253     398 .. 0.86

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 2.1e-32
                      EEEEES---GG.GTHHHHHHHHHHHH.H..HEEEEEES---......HHHHHHHTT-T...TEEEE---..THHHHHHHH-SEEEE--..---S CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkk..dvrlvivGdgprp....eeleelaagle..erveftGfv..edlaellaaadvfvaPs..egfg 84 
                      ++++v+r+ + +kg+d+l+e +++l ++  d++l+ivG++ r+    +e++el + l+   +v+f+Gf   edla ++a+ dvf+ +s  e+fg
       CCE28932.1 255 IFVTVSRI-AGEKGFDFLAEVAKELDARglDFQLYIVGGN-RNadveKEIQELFEPLArrGKVIFAGFQvgEDLATAYASGDVFLHCSvtETFG 346
                      67889999.555**************99766*******54.442344455444443332256*****999*******************99*** PP

                      HHHHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  85 lkllEamaaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                      l++lEama+glpvVa d gg++++v  g++g+lvpp+d   ++++ ++L +d
       CCE28932.1 347 LVVLEAMASGLPVVARDEGGPSDIVqhGDTGFLVPPRDLRGFVAKAVELAQD 398
                      *************************************************987 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0     3e-17   1.1e-13       2     157 ..      42     225 ..      41     228 .. 0.77
   2 ?   -0.0   0.1      0.29   1.1e+03       9      33 ..     273     297 ..     270     433 .. 0.61

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 3e-17
  Glyco_trans_4_4   2 GigryvaelaraLaarGheVtvltpapapg............apeleedgvrvhrlpvprrp..spladlaalralrrllrqrrerpdvvhahs 81 
                      G++r + +l+ +L+++G++V v++p+ +++             p+  ++ vr+++ p+p +p  s ++ ++ ++  +r++  ++ +pd++++ s
       CCE28932.1  42 GVSRTTLMLVNHLRDHGARVAVVAPHNHTNhntfspppsptlGPADKQPEVRLTGYPLPFNPelSVVYPVRNSTLYARTF-GDDSPPDLIYLAS 134
                      9***********************55555555555444444455567889999988777665337999999999999999.7************ PP

  Glyco_trans_4_4  82 pt..aglaarlarrr...rgiplvvtlhgll........lrrgsgavrrlyralerrllrr..adavlvvseaeaeelralgvpadrvvvv 157
                      p   + ++++++r++   + ip++++++++l        +++ s+ +   ++a++++l+r+    +++++s+++ ++l+ + ++a++++++
       CCE28932.1 135 PAslGFQVMLQLRQQpreKQIPIICNFQTDLsgycsilfPAPLSHLAVFTFDAVQSYLFRHssIKTIFYPSRFVKRYLTKNHIQANKLELL 225
                      87335566777774433357********75544444443445588898899**********77788*******************998876 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.29
  Glyco_trans_4_4   9 elaraLaarGheVtvltpapapgap 33 
                      e+a++L arG + ++++ ++ ++a+
       CCE28932.1 273 EVAKELDARGLDFQLYIVGGNRNAD 297
                      6677777777777777644433322 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.5e-14   5.4e-11       1     169 [.      40     232 ..      40     233 .. 0.70
   2 ?    4.2   0.0     0.011        38       8     101 ..     271     361 ..     269     390 .. 0.73

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 1.5e-14
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeev............elvvrvprvplpllkrllr..slaflr.rlrrllkrekpDvvHahs 80 
                     v+Gv r +l L+++L+++G +V vv+p+    +                   vr++++plp+++ l     ++++  ++r   +   pD++   s
      CCE28932.1  40 VNGVSRTTLMLVNHLRDHGARVAVVAPHNHTNHNTFSpppsptlgpadkQPEVRLTGYPLPFNPELSVvyPVRNSTlYARTFGDDSPPDLIYLAS 134
                     69***********************6665554444445666677778663334455555555544443112233331334444444********* PP

  Glyco_transf_4  81 paalgaa.llalrr...rlgiplVltvHglye......krllkarlkplsrllralerrl...lrradrviavSeatadelrerygvppekitVi 162
                     pa+lg+  +l lr+   +++ip+++ + +             +a l+ l  + +   +     +++ + ++ +S++++++l +  +++++k++ +
      CCE28932.1 135 PASLGFQvMLQLRQqprEKQIPIICNFQTDLSgycsilF---PAPLSHLAVFTFDAVQSYlfrHSSIKTIFYPSRFVKRYLTK-NHIQANKLELL 225
                     ***99861566666******************9996541...44444444443333333345577999***************.*********** PP

  Glyco_transf_4 163 pnGvDle 169
                      +Gv+++
      CCE28932.1 226 TRGVNTQ 232
                     *****96 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.011
  Glyco_transf_4   8 vleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkre..kpDvv.Hahspaalgaallalrrrlgipl 99 
                     + e+a++L +rG + +++  g+++ ++ e    +++   + pl +r + ++ + +++ + l       Dv  H+    ++g+++l +++ +g+p+
      CCE28932.1 271 LAEVAKELDARGLDFQLYIVGGNRNADVE----KEIQELFEPLARRGKVIF-AGFQVGEDLATAyaSGDVFlHCSVTETFGLVVLEAMA-SGLPV 359
                     6799********99999988888888877....333333333333333333.3333333333333578888899988899999999887.99999 PP

  Glyco_transf_4 100 Vl 101
                     V+
      CCE28932.1 360 VA 361
                     96 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   3.3e-14   1.2e-10       1      85 [.     335     420 ..     335     426 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 3.3e-14
  Glyco_trans_1_2   1 ivLnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydh 85 
                      ++L++s  e++ l+++Ea+a+G ++++ d  g+ ++++ g++++l+   dl  +++k  +l ++ ++r++++++are    e t+++
       CCE28932.1 335 VFLHCSVTETFGLVVLEAMASGLPVVARDEGGPSDIVQHGDTGFLVPprDLRGFVAKAVELAQDTQLRERMSRRAREA-ACEATWEK 420
                      57999999*********************************************************************9.55667765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3975.09
//
Query:       CCE28933.1  [L=331]
Description: uncharacterized protein CPUR_02623 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2737.16
//
Query:       CCE28934.1  [L=522]
Description: uncharacterized protein CPUR_02624 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-21   76.7  35.1    4.6e-13   48.8  19.0    2.1  2  MFS_1         Major Facilitator Superfamily
    7.4e-16   58.0  13.0    1.5e-15   57.0  13.0    1.6  1  Sugar_tr      Sugar (and other) transporter
  ------ inclusion threshold ------
       0.89    8.7   2.6         15    4.7   0.0    2.6  2  Bac_export_2  FlhB HrpN YscU SpaS Family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8  19.0   7.6e-17   4.6e-13       3     268 ..      67     397 ..      65     399 .. 0.77
   2 !   34.3  12.4     2e-12   1.2e-08      42     174 ..     383     515 ..     372     521 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 7.6e-17
       MFS_1   3 laaflsalarsilgpalpl.al...aedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqG 96 
                 ++++  ++a+++l+p++++ +l   ++++g+s     ll+ +  +g +++++++G+  d fGr++ + l+l l+a+++++++ + +++ +  ++ ++ +
  CCE28934.1  67 FIVVGFGWASDNLWPIVTSlILkpvTSEFGVSRP--PLLTLAQNIGLLAGAVFWGFGCDIFGRKWGFNLTLGLTAVWGMIAA-GsPNFAAAGIFAAFWS 162
                 5666677888888999886444666888886655..589999***********************************66666.43555588888889** PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...............Wravfyilaivsllafv..lfllllpeeppe 178
                 +g g+ +p+  a++ +  p   +   + +ls+ ++l+ +++ l++  l+ +                 Wr+  + +++++ll+f+  +  +l+++ +++
  CCE28934.1 163 FGVGGNLPVDSAIFLEFLPA-SHQYLLTILSLDWALAQVIANLVAWPLLGNMTcgikeipcprshnmgWRYFVLTMGGITLLMFLarF--VLFTVYESP 258
                 ********************.7777788999988888888866665555344466999*************************99544..444333333 PP

       MFS_1 179 rkrkspkeee...........................................kgtgpaplvp.......awkallkdpvlw....illialllfffgf 223
                 +    + ++e                                                    +         k l++++ +      ++++++l+++g+
  CCE28934.1 259 KFLIGKGRDEeavrvihevarrngktialtvedlkacepegyaaetnasaavkR--------NldklnpkKVKVLFSNRRMAlstgTMMAIWALVGLGY 349
                 333333333356999999999999999999999999999999977776555442........03334456689999999994466767777777777** PP

       MFS_1 224 sglltllplylqevlgls....glllaglllallalvgailallagrls 268
                  ++ ++lp++ q+ +g +    + ++++  + +++++g+++al++g l+
  CCE28934.1 350 PLYNAFLPFI-QDSRGADfddgSTYITYRNSLIISVLGVPGALIGGLLV 397
                 *********7.**********9446666667777778888898888876 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 2e-12
       MFS_1  42 algaavaslplGrlsd..rfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgp 138
                 +++ + ++l++G l++  r+Gr+ +l ++ +l++++l++ + a++++ ll   +   +++++++++ + ++ ++fp ++rg +++l ++++ +  i++p
  CCE28934.1 383 SVLGVPGALIGGLLVElpRIGRKGTLSISTTLTGVFLYCSTAATNSTSLLGWNCAFNFCSSVMYAVLYGYTPEIFPTPQRGTGNALTATCNRVFGIMAP 481
                 667789999*****99889*****************555555577779*************************************************** PP

       MFS_1 139 llggllasslgWravfyilaivsllafvlfllllpe 174
                 +++ +    l   a+ y  +++++ a++l+l+l +e
  CCE28934.1 482 IVAMFAN--LQTAAPVYTSGALFIAAGLLALILPFE 515
                 **88887..888999999999999999986666555 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0  13.0   2.5e-19   1.5e-15      51     428 ..     103     505 ..      97     515 .. 0.77

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 2.5e-19
                 HHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHH CS
    Sugar_tr  51 ivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitf 149
                 ++ + ++G ++G++f g+  d+fGRk+++  +  l+ + +++ a ++   ++ +  +   +  +gvG+   + +    E+ p+++ + l ++  l +++
  CCE28934.1 103 LTLAQNIGLLAGAVFWGFGCDIFGRKWGFNLTLGLTAVWGMIAAGSP---NFAAAGIFAAFWSFGVGGNLPVDSAIFLEFLPASHQY-LLTILSLDWAL 197
                 566789****************************************9...9999999999************************976.556778***** PP

                 HHHHHHHHHHHH..HTSS-...........TTHHHHHHHCCHHHHHHHHHHG...GGS---HHHHHHTT-HHHHHHHHHH...HHHC......HHHHHH CS
    Sugar_tr 150 Gilvaaifglgl..nktsn...........adgwrillglqlvpallllill...lflPESPrylvekgkeeeakevlak...lrge......edadre 223
                  +++a  + + l  n+t             + gwr+++     ++ll+++++   +++ ESP +l+ kg++eea +v+ +    +g+      ed + +
  CCE28934.1 198 AQVIANLVAWPLlgNMT-CgikeipcprshNMGWRYFVLTMGGITLLMFLARfvlFTVYESPKFLIGKGRDEEAVRVIHEvarRNGKtialtvEDLKAC 295
                 ********999864444.2599*******99*****************98653237899*******************997533333888877333333 PP

                 HHH.HHHHHHHHHH............HTTHHHHSH...HHHHHHHHHHHH.HHTTHHHHHHHTTTHHHHSS-THH.......HHHHHHHHHHHHHHHHH CS
    Sugar_tr 224 lae.ekdsleaeqeee.......kaswkellssktvrqrlligvvlqifq.qltGinaimyysptifenlglsks.......llvtiivgvvnfvatfv 306
                   e ++++++a+   +        +++k l+s+   r +l +g +++i+     G+     + p i ++ g + +       +  ++i++v+ +   ++
  CCE28934.1 296 EPEgYAAETNASAAVKrnldklnPKKVKVLFSN--RRMALSTGTMMAIWAlVGLGYPLYNAFLPFIQDSRGADFDdgstyitYRNSLIISVLGVPGALI 392
                 333033344444333367887777888888888..45799999999988615689999999********9999888998776677899*********** PP

                 HHHHHH..HS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHH...HHHHHSHTTTHHHHHHHHHHHHHHHHH CS
    Sugar_tr 307 aiflvd..rfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwv...lvsElfpqsvRskalaiavavnwlanf 400
                 + +lv+  r+GR+ +l ++ ++ + +f++ +  +++++++           ++ + ++f+++   + +v   + +E+fp+  R+++ a+++++n ++ +
  CCE28934.1 393 GGLLVElpRIGRKGTLSIS-TTLTGVFLYCS--TAATNST----------SLLGWNCAFNFCSSVMYAVlygYTPEIFPTPQRGTGNALTATCNRVFGI 478
                 *99998779****554444.34444444444..4555555..........5666666666666655444111689************************ PP

                 HHHHHHHHHHCHHHT-HHHHHHHHHHHH CS
    Sugar_tr 401 lisllfpiiteaigggyvflvfaglavl 428
                    ++ +++  +   ++v+   a + ++
  CCE28934.1 479 MAPIVAMFANLQTA-APVYTSGALFIAA 505
                 99988888877766.5554444433333 PP

>> Bac_export_2  FlhB HrpN YscU SpaS Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0025        15     101     170 ..     307     375 ..     232     395 .. 0.81
   2 ?    3.1   0.7    0.0077        46      25     101 ..     423     504 ..     405     510 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0025
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2 101 tkalkpklsklnplkglkrifslrslvellksllkvvlvgavaylvlkseleellalaeldleaalelll 170
                     a+k +l+klnp k++k +fs r +     +++ + +++ ++y ++++ l+ +     +d+++  ++++
    CCE28934.1 307 SAAVKRNLDKLNP-KKVKVLFSNRRMALSTGTMMAIWALVGLGYPLYNAFLPFIQDSRGADFDDGSTYIT 375
                   5678999******.99**********99999999999999999999988888777766666666555555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0077
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2  25 kelssalvllaglllllllgpslveelaellrevlsa.....lelllelllallllllplllvlllaallanllqvgflfst 101
                   + +++ ++ll++  ++ + ++ +++ l  ++ e++ +      + l+++   ++ +++p++++++ +  +a +   g lf +
    CCE28934.1 423 TAATNSTSLLGWNCAFNFCSSVMYAVLYGYTPEIFPTpqrgtGNALTATCNRVFGIMAPIVAMFANLQTAAPVYTSGALFIA 504
                   5556667777777777777777888888877777777888887778888889999999999999999999999999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3874.27
//
Query:       CCE28935.1  [L=663]
Description: related to 5`-nucleotidase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-35  120.3   0.0    1.9e-34  119.1   0.0    1.5  2  5_nucleotid_C  5'-nucleotidase, C-terminal domain
    5.8e-06   27.0   0.0    8.7e-06   26.4   0.0    1.3  1  Metallophos    Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> 5_nucleotid_C  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.4   1.3e+04      18      44 ..     125     151 ..     117     163 .. 0.75
   2 !  119.1   0.0   2.2e-38   1.9e-34       2     155 ..     314     466 ..     313     468 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.4
                    TS--HHHHHHHHHHTGSTT--EEEEEG CS
  5_nucleotid_C  18 tgetnlgnliadalraaagadialang 44 
                    t+++n+  lia +l  a g d+ l n+
     CCE28935.1 125 TEKCNFPWLIANVLDPALGEDVPLGNA 151
                    789999999999997777777766555 PP

  == domain 2  score: 119.1 bits;  conditional E-value: 2.2e-38
                    EEEESSB....---HHTS--HHHHHHHHHHTGSTT--EEEEEGGG----B..TTTEEEHHHHHHHS-S--EEEEEEEEHHHHHHHHHH.HTTTTTS CS
  5_nucleotid_C   2 igtttveldgrdlalrtgetnlgnliadalraaagadialangggiradl..paGditvkdlltvlpfgntlvvveltGaqlkeaLenesvsaska 95 
                    ig t+ +ld+r+ ++rt+e+nlgn+++d++r+  +ad  ++++g+ir+d   p+G +  kd+ t++pf++ +v ++++G+ +++aLen +vs+++a
     CCE28935.1 314 IGWTAMPLDARFSTVRTRESNLGNFVCDVMRRHHNADCTIMASGTIRGDQvyPPGVVRIKDITTCFPFEDPVVCLRVKGQAIWDALEN-AVSTYPA 408
                    7888889999999***********************************55579**********************************6.99***** PP

                    --TT-EEEESEEEEE-TTS-TT--EEEESSS-BEEE--TTSEEEEEEEHHHHTTGGG-HH CS
  5_nucleotid_C  96 asgrflqvsGlrytydlskpagervtslsvtvngkpldddktYkvatnsylasggdgfsm 155
                    + grf+qvs++ +++d+s+++g+r+  +   + g + d +++Y ++t  y+  g+dgf+ 
     CCE28935.1 409 QEGRFPQVSNIVFEFDASRESGKRLNFV--RIGGRACDTEQEYVLVTRGYMGRGKDGFTS 466
                    ****************************..56**************************75 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   9.7e-10   8.7e-06       1     204 []      28     243 ..      28     243 .. 0.65

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 9.7e-10
                  EEEEEEESBTB.....TTCCTHHHHHHHHHHHH....HHHTTE.SEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEE.EEEC-TTSCHHHHHHHHHH CS
  Metallophos   1 lrilvigDlHl.....algggqlddllkllddl....lreekp.dlvllaGDlvdrgdlekellel.laalvkypipv.ylllGNHegfeeellnkyg 86 
                  +ril+ +D+       a+ +g+l+++++l ++     ++e +p  l l+ GD ++ +  ++ +    + ++++  i+   ++ GNH+ f+ +++++  
   CCE28935.1  28 IRILHYNDVYHvdaasAEPVGGLARFITLCREYqegkPSEGQPkILTLFSGDAFNPSLESSVTKGRhMVPVLNA-IKTdCACVGNHD-FDFGVKQFCN 123
                  599******779****9999**********99866554444553666677*******55553333324444442.33369*******.9999999999 PP

                  HHHHHHHHHEHHHCEEETSEEEEEETTE...EEEEEEESE....CEEE.......THHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESSE CS
  Metallophos  87 ylgifsepwrsdaevfnnlplaslgsgs...lkvlllhGg....spel.......lvsldklgslnleleapepgdewlkdlekrekadwvivlgHsp 170
                    ++ + pw    +v++     +   g+   ++ l+  +g       +       l ++++l     ++ a+   +e+  +  +  +a+++i l+H+ 
   CCE28935.1 124 LTEKCNFPWLIA-NVLDPALGEDVPLGNakrTHMLTTSNGikvgL--IglgerewLATINSLPPDLIYKSATATAKELVPQ-LRAQGAEIIICLSHMR 217
                  888889999997.33433333333333334667777777743331..0322223333333333333333333332666666.99999*********99 PP

                  SSCSSSCSCCHHHHHHHHHHTT.ESEEEEESSSSE CS
  Metallophos 171 lyrgsgylfgdealedllkkyg.vdlvisGHtHvy 204
                   +       +d+ l+  ++  g +d++++GH+H y
   CCE28935.1 218 EH-------NDNKLA--EQTDGlIDIILGGHDHYY 243
                  99.......777777..666667**********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4730.99
//
Query:       CCE28936.1  [L=269]
Description: probable chitosanase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-61  205.6   0.1    8.3e-61  205.0   0.1    1.2  1  Glyco_hydro_75  Fungal chitosanase of glycosyl hydrolase grou


Domain annotation for each model (and alignments):
>> Glyco_hydro_75  Fungal chitosanase of glycosyl hydrolase group 75
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0   0.1   4.7e-65   8.3e-61       1     162 [.      83     254 ..      83     255 .. 0.97

  Alignments for each domain:
  == domain 1  score: 205.0 bits;  conditional E-value: 4.7e-65
  Glyco_hydro_75   1 mdvdcDGaqksr...grCksspdtqpetsfkdlvksy..giedldaeehpYvVlgneg.....ksfdpkeagveplsvlaVvcnnklvygvvgDt 85 
                     md+dcDG+q s+   grC+ss+d+q+ tsf d+++sy  + +dlda++hpYvV+gn+g     k+fdp+++gveplsv+aVvcnnkl+ygv+gD+
      CCE28936.1  83 MDIDCDGIQLSPaddGRCGSSTDMQSVTSFADILRSYstNARDLDANIHPYVVFGNKGtregyKTFDPRKYGVEPLSVMAVVCNNKLIYGVWGDE 177
                     9********988999********************9966689**************888889********************************* PP

  Glyco_hydro_75  86 ngd.gpkekvGEaSiaLatacfgeeelngkkghdekdVlylvFtgsdavpgadgakwkakslkefesslealgdklve 162
                     +gd +p+++vGEaSi+Latac+g+ +  g+ g d +dVlyl+F+g+davpga+ga+w+a+s++ f +s+++lgd+lv 
      CCE28936.1 178 HGDdDPQAMVGEASISLATACYGK-STGGDIGYDGNDVLYLAFQGKDAVPGARGANWTAQSYEAFAASISSLGDELVG 254
                     ***9********************.99*************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 2024.52
//
Query:       CCE28937.1  [L=278]
Description: uncharacterized protein CPUR_02627 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2077.07
//
Query:       CCE28938.1  [L=381]
Description: related to GLY1-L-threonine aldolase,low-specific [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-37  127.5   0.0    7.6e-37  127.2   0.0    1.0  1  Beta_elim_lyase  Beta-eliminating lyase
    9.6e-06   25.0   0.0    1.3e-05   24.6   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.013   15.0   0.1      0.023   14.1   0.1    1.4  1  PALP             Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.0   1.3e-40   7.6e-37      25     290 ..      41     305 ..      18     308 .. 0.88

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 1.3e-40
                      -CCCT--HHHHHHHHHHHHHTT-..SEEE.EES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHH CS
  Beta_elim_lyase  25 desYgedktvnrLedavaelfgk..eaal.fvpqGtaAnsillkillqrgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekle 115
                      +  Yg+d    + + ++++ +g   + ++ fvp+Gt An+i++++ l+++e+v++ +++hi ++etga+ e +g k ++++  + Gk++++ + 
       CCE28938.1  41 QTGYGNDGYSAEAKRNIRAHLGCgdDVGVfFVPSGTSANAISIAACLRPHEAVVAASTGHIVTRETGAV-EASGHKIINVPPVN-GKLTPATIS 132
                      3359999999999999999766511555568************************************99.678889********.********* PP

                      HHS--S-T..TS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS..-CHHHHTTSSEEEEESSSTT--SS- CS
  Beta_elim_lyase 116 aaikevga..heekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslge..ivkemfsyvDsvtmslkKdllanvG 205
                      +a++++    h++k++l+++ +++++  G+v++ eel++++ +++ +g+ l++DgAR+  a +s +   +++++++  D+++++++K++    G
       CCE28938.1 133 KALDDNWHfpHMAKPRLVYISNATEV--GTVYTKEELAAIKTLCETKGLLLFMDGARIGAALTSTKNdlTLADVLQLTDIFWIGGTKNGAL-LG 223
                      *****8889****************9..**********************************77765116799***************999.77 PP

                      EEEEE-HH....HHHHHHHH.HHHHT---SSTHHHHH..HHHHHHHHSSTTHHHHHHHHHHHHHHHHHCT--EEECCGTTCCEEEE CS
  Beta_elim_lyase 206 gvlafrddeledylaerveq.rkylggglrqagvlaaleagiraleeglaslerdhktaeqlaeklelvrlaiprrvytqehldyv 290
                        ++++d+     la+  e+ +k++g+ l ++++++++ a +   ++   +++r +  ae l + +    +a+  +++t++++ ++
       CCE28938.1 224 EAVVVKDA----ALARDFEFyVKQHGSLLAKSRIMGVEFAELFRGTLYFDLARRGNLAAEALSRTIVGAGFALRAETETNQVFAVL 305
                      55555555....588888988****************889999999999********************************99875 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.1e-09   1.3e-05      31     198 ..      35     195 ..      17     252 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.1e-09
                    HHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHH..HHHHTTSEEEEEEBEE CS
  Aminotran_1_2  31 alaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasykn..ilrlsggevvryplys 124
                    a+ g++ + yg+   ++e++ ++   lg       +  +   v sG++a++  ++++l+  p++++++ +  +    +  ++++sg +++ +p   
     CCE28938.1  35 ASNGSQQTGYGNDGYSAEAKRNIRAHLG-----CGDDVGVFFVPSGTSANAISIAACLR--PHEAVVAASTGHIVTREtgAVEASGHKIINVP--- 120
                    5777888899999999999999999999.....22333355667999999999999999..************766543389***********... PP

                    TTTTEE-HHHHHHHHTTHHCTTE...TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS CS
  Aminotran_1_2 125 eedfhldlealeealkeapegnk...ktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl 198
                    + + +l+   + +al+++    +   k++++++ ++    Gtv+t+eel ++ +l++ ++lllf D a  g +++s+
     CCE28938.1 121 PVNGKLTPATISKALDDNWH-FPhmaKPRLVYISNATE-VGTVYTKEELAAIKTLCETKGLLLFMDGARIGAALTST 195
                    8899************9533.226889******99986.8**************************98777776655 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   3.8e-06     0.023     152     274 ..      59     192 ..      11     205 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.8e-06
                 HHTT..TTEEEEEEE-SSSHHHHHHHHHHHH.....HSTT-EEEEEEECTTCGGTTCCS..S.SS..B.......SSS.CCSTCS..CGTTCCHHHH.S CS
        PALP 152 eqlg..gkpdavvvpvGgGgliaGiaaglke.....rrpdvrvigvepegsdalarslragrrvtvpvs......dtiadglavg..spselafell.d 234
                 + lg  +++ +++vp G+ +++  iaa l+      + ++ +++  e+  ++a ++ +      +vp+        ti ++l+ +   p     +l+  
  CCE28938.1  59 AHLGcgDDVGVFFVPSGTSANAISIAACLRPheavvAASTGHIVTRETGAVEASGHKI-----INVPPVngkltpATISKALDDNwhFPHMAKPRLVyI 152
                 5555669999********************9444443333444444444444444444.....333333667778999999999999555555555524 PP

                 EEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH CS
        PALP 235 rlvdeivtvsdeealeamrllarregivvepssaaalaal 274
                    +e+ tv ++e l+a+++l+++ g+++   +a   aal
  CCE28938.1 153 SNATEVGTVYTKEELAAIKTLCETKGLLLFMDGARIGAAL 192
                 4445899********************9988887777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2860.55
//
Query:       CCE28939.1  [L=446]
Description: uncharacterized protein CPUR_02629 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-52  177.2   0.0    4.2e-51  173.4   0.0    2.0  2  CENP-L    Kinetochore complex Sim4 subunit Fta1


Domain annotation for each model (and alignments):
>> CENP-L  Kinetochore complex Sim4 subunit Fta1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.015   2.7e+02      19      44 ..      28      54 ..      20      87 .. 0.80
   2 !  173.4   0.0   2.3e-55   4.2e-51       1     162 [.     192     412 ..     192     413 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.015
      CENP-L 19 avtdfLsttFD.crvspLrlssasLvs 44
                ++  f++ttF+  rvspL +++++L  
  CCE28939.1 28 ILPPFFNTTFStHRVSPLFIGQQELDP 54
                666799*****558*****99999865 PP

  == domain 2  score: 173.4 bits;  conditional E-value: 2.3e-55
      CENP-L   1 qfthLPLLllrmpaslkkavtdfLsttFDcrvspLrlssasLvsaleswlatlsvaarralqslvkdlqltlsFavp...................... 77 
                 qf+hLPLLllrmp++lk ++ d++sttFDcrvs+L+l++++Lv+++e+w++ ++++ +++      d+ ++l+F++p                      
  CCE28939.1 192 QFVHLPLLLLRMPQALKGVIGDWISTTFDCRVSKLNLGTRTLVTVWEDWIKVAGLPGKGP------DFSISLAFNAPlakkvrsskaasgneageqerq 284
                 69******************************************************9999......********************************* PP

      CENP-L  78 ...............peapglktlditipaedlreflragedsse.............................eddttndeesqpFleaLasylkkhl 132
                                + +pgl+++d+ti+++dlr+f+rage+s +                               +t+++ +++pF+eaLa+yl++hl
  CCE28939.1 285 gpdegededsedddtSREPGLRSIDMTISPQDLRRFFRAGEQSGAlygsinsglwesdprerrrlaggnaddgwAWRTNQAPDEHPFTEALARYLDHHL 383
                 *****************************************9999*****************************445999******************* PP

      CENP-L 133 alnldhpavrvskvscgafvlseegRlKla 162
                 alnl+hp+vr++++scg+fvl++ +RlK++
  CCE28939.1 384 ALNLFHPSVRIVQISCGGFVLAQ-SRLKVV 412
                 ***********************.****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3354.94
//
Query:       CCE28940.1  [L=257]
Description: related to siroheme synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-31  107.2   0.0    8.4e-31  106.5   0.0    1.3  1  NAD_binding_7   Putative NAD(P)-binding
    3.6e-26   90.6   0.1    5.4e-26   90.0   0.1    1.3  1  Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
    2.1e-14   52.7   0.1    3.8e-14   51.8   0.1    1.5  1  Sirohm_synth_M  Sirohaem biosynthesis protein central
     0.0068   15.7   0.0     0.0092   15.3   0.0    1.1  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.086   13.1   0.2       0.16   12.2   0.2    1.4  1  TrkA_N          TrkA-N domain
       0.17   11.7   0.1       0.25   11.1   0.1    1.2  1  KdpC            K+-transporting ATPase, c chain
       0.21   10.9   1.1        2.5    7.4   0.0    2.6  3  ThiF            ThiF family


Domain annotation for each model (and alignments):
>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.0   3.3e-34   8.4e-31       1     104 []      16     127 ..      16     127 .. 0.93

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 3.3e-34
  NAD_binding_7   1 lfldlkgkkvlvvGgGevAarkvrklleagakvtvvapev.......keeleelvklaeeele.kdlegadlviaatddrelneriaeaakarril 88 
                    l++++kgkkvl+vGgGevAa +v + l+a+a+v+vv p++       +++++ ++++ ++ +e +dl+ga++v++a+dd++ +++i++++k+r+i+
     CCE28940.1  16 LAWQIKGKKVLIVGGGEVAAGRVLNCLNADADVVVVCPASglnpevaHRIAQHQITHVDRVFEpSDLDGAEMVMVAVDDPAASTAIWKLCKERKIP 111
                    79*************************************9886666656666888889999955******************************** PP

  NAD_binding_7  89 vnvadkpelcdfifpa 104
                     n+ad p++cdf+f++
     CCE28940.1 112 ANIADVPPECDFYFGS 127
                    **************97 PP

>> Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.1   2.1e-29   5.4e-26       1      68 []     160     227 ..     160     227 .. 0.99

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 2.1e-29
  Sirohm_synth_C   1 PdnlgaAiekvgkLRkkLReiapdqeegpkRMkWmskvcdswsleelaeldeedmekLlemyekgkvp 68 
                     P+n+g+Aie +g+LR+kLR+iap+ e +pkRM Wmskv+d++++ee+++++ edm++Ll +y+ +kvp
      CCE28940.1 160 PRNAGNAIESIGMLRAKLRKIAPNIEASPKRMGWMSKVSDTYKWEEMCDMTLEDMDNLLLFYPADKVP 227
                     89***************************************************************997 PP

>> Sirohm_synth_M  Sirohaem biosynthesis protein central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.1   1.5e-17   3.8e-14       1      27 [.     131     157 ..     131     158 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 1.5e-17
  Sirohm_synth_M   1 rGpLQIaiSTnGksPrLAaliRreier 27 
                     +GpLQI++STnGk+PrLAa iR+ i++
      CCE28940.1 131 DGPLQIMVSTNGKGPRLAAAIRKFIAS 157
                     8**********************9986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.6e-06    0.0092     159     203 ..      18      61 ..      13      90 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.6e-06
  Pyr_redox_3 159 fhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekee 203
                  + +++g+kv+++Gg++ a+   l++ +++a+V vv + s ++ e 
   CCE28940.1  18 W-QIKGKKVLIVGGGEVAAGRVLNCLNADADVVVVCPASGLNPEV 61 
                  5.799******************************9998877654 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   6.4e-05      0.16       1      86 [.      25     108 ..      25     117 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.4e-05
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSE.EEES-TTSHH.HHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHH CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreegle.vvvgdatdee.vLeeagiekadaviaatgddeanilavllakel 86 
                 ++i+G G+v+   + +  + +  dvvv+         l  e ++ + +++ t+ + v e  +++ a++v++a++d +a++++ +l+ke 
  CCE28940.1  25 VLIVGGGEVAAGRVLNCLNaDA-DVVVVCPAS----GLNPEVAHrIAQHQITHVDrVFEPSDLDGAEMVMVAVDDPAASTAIWKLCKER 108
                 6899999998765555555277.799999965....5555553337777777755278889*************************973 PP

>> KdpC  K+-transporting ATPase, c chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   9.9e-05      0.25     115     142 ..      49      76 ..      32      98 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.9e-05
                 HHS-BSSS---EE-HHHHHHTHHHHHHH CS
        KdpC 115 lvtaSgSGLDPhIspeaAelQvarvaka 142
                 +v + +SGL P++  + A+ Q++ v + 
  CCE28940.1  49 VVVCPASGLNPEVAHRIAQHQITHVDRV 76 
                 57889*****************988664 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.3      0.32   8.3e+02      15      29 ..      19      33 ..      16      40 .. 0.86
   2 ?    7.4   0.0     0.001       2.5      83     137 ..      56     112 ..      49     125 .. 0.87
   3 ?    0.5   0.0      0.12   3.1e+02      71     119 ..     172     216 ..     155     224 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.32
                HHHTSEEEEE--SHH CS
                xxxxxxxxxxxxxxx RF
        ThiF 15 kLrdskvllvGaGgl 29
                +++ +kvl+vG G +
  CCE28940.1 19 QIKGKKVLIVGGGEV 33
                58999******9976 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.001
                 HT-TTSEEEEEES-CCG.CC.S-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EE CS
                 xxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  83 einpdveveavteritd.et.vleellesvDlVvdalDniearrlvnracvkkgipl 137
                  +np+v  +  +++it  +  ++ + l ++ +V+ a+D  +a  ++ ++c +++ip 
  CCE28940.1  56 GLNPEVAHRIAQHQITHvDRvFEPSDLDGAEMVMVAVDDPAASTAIWKLCKERKIPA 112
                 689999999999999886665677779999************************995 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.12
                 SBHHHHHHHHHHHT-TTSEEEEEES-CCGCC.S-HHHHTT-SEEEEESSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
        ThiF  71 kpKaevaaealqeinpdveveavteritdet.vleellesvDlVvdalDn 119
                 +     ++++l++i+p++e ++ ++ ++++   + ++ e +D+ +  +Dn
  CCE28940.1 172 M-----LRAKLRKIAPNIEASPKRMGWMSKVsDTYKWEEMCDMTLEDMDN 216
                 4.....567899999*9999999998877543344566666776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1869.85
//
Query:       CCE28941.1  [L=667]
Description: related to vacuolar segregation protein PEP7 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-24   85.7  20.9      2e-17   63.1   5.7    3.1  3  FYVE            FYVE zinc finger
    1.2e-18   66.5   0.6    2.8e-18   65.4   0.6    1.7  1  Rbsn            Rabenosyn Rab binding domain
    0.00028   21.0   3.3    0.00028   21.0   3.3    4.0  4  zf-AN1          AN1-like Zinc finger
  ------ inclusion threshold ------
      0.019   15.2  12.5      0.033   14.5   0.0    3.2  3  zf-Di19         Drought induced 19 protein (Di19), zinc-bindi
       0.56   10.4   7.6       0.55   10.5   2.6    3.0  3  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
       0.56   10.2   2.7        7.5    6.6   0.6    3.1  2  UBZ_FAAP20      Ubiquitin-binding zinc-finger
       0.57   10.1   2.5         13    5.7   0.0    2.9  2  zf-C2H2_9       C2H2 type zinc-finger (1 copy)
       0.72   10.3   4.0       0.52   10.7   0.5    2.4  2  C6_DPF          Cysteine-rich domain
       0.84   10.6   0.0       0.84   10.6   0.0    6.7  7  zf-C2H2_4       C2H2-type zinc finger
        1.2    9.4   9.1        1.8    8.9   0.1    3.9  4  zinc_ribbon_9   zinc-ribbon
        1.7    8.7   9.7        2.3    8.3   0.1    3.6  3  TMF_DNA_bd      TATA element modulatory factor 1 DNA binding
        1.7    8.9   7.5        1.8    8.9   3.4    2.6  2  ABC_tran_CTD    ABC transporter C-terminal domain
        2.5    8.3   7.9        1.6    8.9   2.8    2.9  2  Cnn_1N          Centrosomin N-terminal motif 1
        2.6    8.1  13.4        1.3    9.1   1.1    3.9  4  HypA            Hydrogenase/urease nickel incorporation, meta
        2.6    8.3   4.3        4.6    7.5   0.2    2.9  3  DUF5446         Family of unknown function (DUF5446)
        4.1    7.5  21.5       0.95    9.5   1.0    4.6  5  zf-C2HC5        Putative zinc finger motif, C2HC5-type


Domain annotation for each model (and alignments):
>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.93     1e+03       8      22 ..      79      94 ..      73     100 .. 0.66
   2 !   28.3   5.3   1.3e-09   1.5e-06       2      65 ..     179     248 ..     178     250 .. 0.84
   3 !   63.1   5.7   1.8e-20     2e-17       2      66 ..     332     414 ..     331     416 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.93
                --SB-TTT--B-.-SS CS
        FYVE  8 evkkCeiCakkF.sll 22
                ++  C+iC+++  +ll
  CCE28941.1 79 AALVCPICNEEMvTLL 94
                5667999998875444 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 1.3e-09
                 ---...--SB-TT..T--B--SSS--EE-TTT--EE-STTS-EEE.EEGGGTEEEEE.....EE-HHHHHH CS
        FYVE   2 kwkddsevkkCei..CakkFsllrrrhhCrlCGkvvCekCssklvallekeaeeksv.....rvCkeClae 65 
                 +w++ ++ + C+   C k+   l+    Cr+CGk++Ce+++  +++l  ++a++++v     rvC++C+++
  CCE28941.1 179 HWQRPTSNDLCTDpaCGKRLGPLNGNINCRHCGKLFCEQHTMYQMKLS-RSANHEPVrgqwgRVCETCYKS 248
                 7999999999*8777*****999******************9999777.5555555556666******986 PP

  == domain 3  score: 63.1 bits;  conditional E-value: 1.8e-20
                 ---...--SB-TTT--B-.-SSS--EE-TTT--EE-....STTS-EEE.EE.............GGGTEEEEEEE-HHHHHHH CS
        FYVE   2 kwkddsevkkCeiCakkF.sllrrrhhCrlCGkvvC....ekCssklvall.............ekeaeeksvrvCkeClael 66 
                  w+dd++v+kC+ C+++F s++ rrhhCr+CG+vvC    ++Css+ + +               + +   ++r+C+eC++++
  CCE28941.1 332 AWEDDEKVAKCPFCQQEFgSWTFRRHHCRICGRVVCadaaTACSSQVSLNAvpgtpngflgnmdMNGHVPLDIRMCRECHHTI 414
                 7******************9****************8888788877775557788888887765555556677*******976 PP

>> Rbsn  Rabenosyn Rab binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.6   2.5e-21   2.8e-18       1      42 []     606     647 ..     606     647 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 2.5e-21
        Rbsn   1 vLeEQkflveemIkqAkkarrfDEvatLeeNLkELqeEidrl 42 
                 vLeEQ+f+v emI++Ak arrf+Ev +L++NL+EL++Ei++l
  CCE28941.1 606 VLEEQQFMVGEMIRSAKGARRFEEVGALSSNLDELEKEIAQL 647
                 9**************************************986 PP

>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   3.3   2.5e-07   0.00028       1      30 [.     189     221 ..     189     223 .. 0.88
   2 ?    2.4   0.6      0.16   1.8e+02      14      23 ..     340     349 ..     334     351 .. 0.83
   3 ?    1.5   6.3      0.31   3.5e+02       1      26 [.     342     369 ..     342     371 .. 0.74
   4 ?   -3.0   0.3       7.9   8.9e+03      16      21 ..     407     412 ..     404     413 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.5e-07
      zf-AN1   1 CsfksCkkkdflp...fkCryCgkvFClkHrlp 30 
                 C+ + C+k++      ++Cr+Cgk FC++H ++
  CCE28941.1 189 CTDPACGKRLGPLngnINCRHCGKLFCEQHTMY 221
                 9999******733678**************886 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.16
      zf-AN1  14 fkCryCgkvF 23 
                  kC++C+++F
  CCE28941.1 340 AKCPFCQQEF 349
                 69******98 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.31
      zf-AN1   1 CsfksCkkkd....flpfkCryCgkvFClk 26 
                 C f  C+++     f   +Cr Cg+v C++
  CCE28941.1 342 CPF--CQQEFgswtFRRHHCRICGRVVCAD 369
                 554..8887754434449**********85 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 7.9
      zf-AN1  16 CryCgk 21 
                 Cr+C++
  CCE28941.1 407 CRECHH 412
                 999986 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.9e-05     0.033       3      27 ..      81     106 ..      79     111 .. 0.88
   2 ?   -2.5   0.7       5.9   6.6e+03       4      14 ..     206     216 ..     204     250 .. 0.64
   3 ?    6.9   2.4    0.0068       7.6       4      26 ..     341     359 ..     338     384 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.9e-05
     zf-Di19   3 ftCPyCgk.eltvkeLveHvedeHrv 27 
                 + CP C++ ++t  +L +H++d H++
  CCE28941.1  81 LVCPICNEeMVTLLQLNRHIDDSHQE 106
                 57*****978**************86 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.9
     zf-Di19   4 tCPyCgkeltv 14 
                 +C +Cgk + +
  CCE28941.1 206 NCRHCGKLFCE 216
                 56677764333 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0068
     zf-Di19   4 tCPyCgkeltvkeLveHvedeHr 26 
                 +CP+C++e+   ++ +H    H+
  CCE28941.1 341 KCPFCQQEFGSWTFRRH----HC 359
                 8********99999988....44 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.4   2.7e+03      46      71 ..      87     112 ..      84     137 .. 0.79
   2 ?    0.5   0.0      0.61   6.8e+02      18      39 ..     271     292 ..     255     302 .. 0.63
   3 ?   10.5   2.6   0.00049      0.55      17      79 ..     586     650 ..     571     656 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.4
  TMF_TATA_bd  46 reeivklmkeneelkelkkeleelek 71 
                  +ee+v+l++ n   +++++el e  +
   CCE28941.1  87 NEEMVTLLQLNRHIDDSHQELPEAAQ 112
                  68889999988888888888876544 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.61
  TMF_TATA_bd  18 sseirrlEgElaslkeelerle 39 
                  +++++r   E++ l+++l++l+
   CCE28941.1 271 QKKVQRQNLEVSRLEKRLTKLT 292
                  3444555555555555554444 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00049
  TMF_TATA_bd  17 lsseirrlEgElaslkeelerleaerdeareeivklm...keneelkelkkeleelekeleelqer 79 
                   s+ + +lE+E + lke+l+ le+++  + e i +     ++ ee+ +l+++l+eleke+++l+ +
   CCE28941.1 586 SSTIVSQLETEEKDLKERLAVLEEQQFMVGEMI-RSAkgaRRFEEVGALSSNLDELEKEIAQLRIK 650
                  466789****************99876666555.444244899******************99876 PP

>> UBZ_FAAP20  Ubiquitin-binding zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1       0.2   2.3e+02       4      18 ..      83      96 ..      81     104 .. 0.73
   2 ?    6.6   0.6    0.0067       7.5       4      12 ..     342     350 ..     340     352 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.2
  UBZ_FAAP20  4 CPmCqkefaprlsqL 18
                CP+C +e+   l qL
  CCE28941.1 83 CPICNEEMVT-LLQL 96
                *****99866.5555 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0067
  UBZ_FAAP20   4 CPmCqkefa 12 
                 CP+Cq+ef 
  CCE28941.1 342 CPFCQQEFG 350
                 *******96 PP

>> zf-C2H2_9  C2H2 type zinc-finger (1 copy)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.012        13       3      22 ..      82     102 ..      80     125 .. 0.86
   2 ?    2.7   0.9       0.1   1.1e+02       3      15 ..     341     353 ..     339     362 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.012
                 B-TTT--B-SSHHHHHHHH.H CS
   zf-C2H2_9   3 lCPvCevkfnswkdlseHi.l 22 
                 +CP+C+ ++ ++ +l  Hi  
  CCE28941.1  82 VCPICNEEMVTLLQLNRHIdD 102
                 7*****************943 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.1
                 B-TTT--B-SSHH CS
   zf-C2H2_9   3 lCPvCevkfnswk 15 
                  CP C+ +f sw+
  CCE28941.1 341 KCPFCQQEFGSWT 353
                 6**********97 PP

>> C6_DPF  Cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2       2.1   2.4e+03      53      64 ..     207     218 ..     201     259 .. 0.68
   2 ?   10.7   0.5   0.00046      0.52      22      65 ..     328     371 ..     313     379 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.1
      C6_DPF  53 CslCekavCvde 64 
                 C  C+k  C ++
  CCE28941.1 207 CRHCGKLFCEQH 218
                 666666666553 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00046
      C6_DPF  22 aksivlkeeayvmkDPfseekeekilvlGakCslCekavCvdee 65 
                 ++ ++++++  v+k Pf +++  +  +   +C +C+++vC+d++
  CCE28941.1 328 QTVVAWEDDEKVAKCPFCQQEFGSWTFRRHHCRICGRVVCADAA 371
                 455677889999********99999999************9864 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00075      0.84       2      24 .]      82     104 ..      81     104 .. 0.90
   2 ?    5.5   0.9     0.034        38       2      16 ..     206     220 ..     205     222 .. 0.82
   3 ?    1.4   0.3       0.7   7.9e+02       5      19 ..     241     255 ..     240     258 .. 0.88
   4 ?    7.2   2.9    0.0097        11       2      19 ..     341     357 ..     340     361 .. 0.74
   5 ?    0.5   1.8       1.4   1.5e+03       1      10 [.     357     366 ..     357     370 .. 0.82
   6 ?   -0.5   0.2       2.8   3.2e+03       2      13 ..     406     418 ..     405     422 .. 0.79
   7 ?   -1.2   0.1       4.8   5.3e+03      12      21 ..     538     548 ..     535     549 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00075
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkthH 24 
                  CpiC++   +  +L+rH+   H
  CCE28941.1  82 VCPICNEEMVTLLQLNRHIDDSH 104
                 6*****************97666 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.034
   zf-C2H2_4   2 kCpiCgksFsskkaL 16 
                  C++Cgk F+ ++++
  CCE28941.1 206 NCRHCGKLFCEQHTM 220
                 5********887765 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.7
   zf-C2H2_4   5 iCgksFsskkaLlrH 19 
                 +C + ++s++++++H
  CCE28941.1 241 VCETCYKSRDGYNDH 255
                 79999******9998 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0097
   zf-C2H2_4   2 kCpiCgksFsskkaLlrH 19 
                 kCp+C++ F  + +++rH
  CCE28941.1 341 KCPFCQQEF-GSWTFRRH 357
                 7********.55555664 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 1.4
   zf-C2H2_4   1 fkCpiCgksF 10 
                 + C+iCg++ 
  CCE28941.1 357 HHCRICGRVV 366
                 57****9986 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 2.8
   zf-C2H2_4   2 kCpiC.gksFssk 13 
                  C+ C ++ Fss+
  CCE28941.1 406 MCREChHTIFSSR 418
                 59***88888765 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 4.8
   zf-C2H2_4  12 skkaL.lrHlk 21 
                 s  +L ++H k
  CCE28941.1 538 SLPQLlRHHQK 548
                 55665155655 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.099   1.1e+02      22      31 ..      80      90 ..      66      94 .. 0.70
   2 ?    0.1   0.8      0.87   9.7e+02      18      33 ..     202     216 ..     193     217 .. 0.73
   3 ?    8.9   0.1    0.0016       1.8      10      31 ..     328     349 ..     327     349 .. 0.78
   4 ?   -3.2   0.1       9.9   1.1e+04      23      28 ..     406     411 ..     402     413 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.099
  zinc_ribbon_9 22 v.lCPhCgggF 31
                   + +CP C+   
     CCE28941.1 80 AlVCPICNEEM 90
                   236****9865 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.87
  zinc_ribbon_9  18 edsdvlCPhCgggFVE 33 
                    + ++  C hCg  F E
     CCE28941.1 202 NGNIN-CRHCGKLFCE 216
                    44555.*****99977 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0016
  zinc_ribbon_9  10 rfVsvspdedsdvlCPhCgggF 31 
                    ++V +++d++  + CP+C++ F
     CCE28941.1 328 QTVVAWEDDEKVAKCPFCQQEF 349
                    56778877666669*****998 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 9.9
  zinc_ribbon_9  23 lCPhCg 28 
                    +C +C+
     CCE28941.1 406 MCRECH 411
                    799997 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.3     0.073        82      53      72 ..     271     290 ..     263     297 .. 0.75
   2 ?    0.4   1.0      0.59   6.6e+02      35      61 ..     590     609 ..     583     611 .. 0.55
   3 ?    8.3   0.1     0.002       2.3      20      62 ..     629     657 ..     620     661 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.073
  TMF_DNA_bd  53 kkkleklekeleeleerlke 72 
                 +kk+++++ e+++le+rl++
  CCE28941.1 271 QKKVQRQNLEVSRLEKRLTK 290
                 57777888888888887765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.59
  TMF_DNA_bd  35 ikkLrkknkelekeikelkkkleklek 61 
                 ++       +le+e k+lk++l+ le+
  CCE28941.1 590 VS-------QLETEEKDLKERLAVLEE 609
                 44.......455555555555555554 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.002
  TMF_DNA_bd  20 EGekLskkelklnntikkLrkknkelekeikelkkklekleke 62 
                 E                 L + + elekei++l  k+ + e++
  CCE28941.1 629 EV--------------GALSSNLDELEKEIAQLRIKIGDAEQK 657
                 44..............445555555555555555555555555 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.53     6e+02      11      34 ..     275     298 ..     267     306 .. 0.72
   2 ?    8.9   3.4    0.0016       1.8      10      60 ..     597     647 ..     590     659 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.53
  ABC_tran_CTD  11 eeleaeIeaLEeeiaeleaeladp 34 
                   ++   e  +LE+++++l++ l +p
    CCE28941.1 275 QRQNLEVSRLEKRLTKLTKLLVNP 298
                   555556778888888888888777 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0016
  ABC_tran_CTD  10 leeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeel 60 
                    + l ++++ LEe++  + + + ++    ++e++ +ls  l+ele+e+++l
    CCE28941.1 597 EKDLKERLAVLEEQQFMVGEMIRSAKGARRFEEVGALSSNLDELEKEIAQL 647
                   346999*********************9*****************999875 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2      0.75   8.4e+02      21      45 ..     279     306 ..     268     329 .. 0.61
   2 ?    8.9   2.8    0.0014       1.6       4      71 ..     585     656 ..     584     658 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.75
      Cnn_1N  21 LriyfLeerleklse...eqkeellken 45 
                 L++  Le+rl+kl++       ++ ++n
  CCE28941.1 279 LEVSRLEKRLTKLTKllvNPPAQITAQN 306
                 5566666666666665555555555555 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0014
      Cnn_1N   4 EqeeqidkLkKENFdLKLriyfLeerleklse....eqkeellkenielkveveslqkelkekkkllreaek 71 
                 E ++ +++L+ E  dLK r++ Lee++   +e     +     +e   l  ++ +l+ke+ +++ ++ +ae+
  CCE28941.1 585 ESSTIVSQLETEEKDLKERLAVLEEQQFMVGEmirsAKGARRFEEVGALSSNLDELEKEIAQLRIKIGDAEQ 656
                 5677899*******************9999998987666666778888888888888888888888888876 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.35     4e+02      85     100 ..      78      94 ..      67      98 .. 0.71
   2 ?    3.5   1.2     0.062        70      69      96 ..     203     249 ..     197     265 .. 0.79
   3 ?    9.1   1.1    0.0011       1.3      54      94 ..     323     364 ..     259     375 .. 0.80
   4 ?   -2.6   0.0       4.8   5.4e+03      72      80 ..     406     414 ..     398     421 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.35
                 H.HHS-TTTSSS-EEEE CS
        HypA  85 k.alrCpkCgsadveiv 100
                 + al Cp C+++ v+++
  CCE28941.1  78 SaALVCPICNEEMVTLL 94 
                 24679*****9999886 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.062
                 -EEEETTTS-EEECHHHHH...................S-TTTSSS- CS
        HypA  69 vkvrCreCgkefeleekal...................rCpkCgsad 96 
                  ++ Cr+Cgk f ++++ +                    C++C +++
  CCE28941.1 203 GNINCRHCGKLFCEQHTMYqmklsrsanhepvrgqwgrVCETCYKSR 249
                 6789******9997763223478999999999999999999998765 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0011
                 C.TTTT-EEEEEEE--EEEETTTS-EEECHH.HHHS-TTTSS CS
        HypA  54 gtvlegaeLeieevpvkvrCreCgkefelee.kalrCpkCgs 94 
                 +++le+++++ e+ + +++C  C++ef + + ++ +C  Cg+
  CCE28941.1 323 RKLLEQTVVAWEDDEKVAKCPFCQQEFGSWTfRRHHCRICGR 364
                 5678999999*****************977644789****97 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 4.8
                 EETTTS-EE CS
        HypA  72 rCreCgkef 80 
                 +CreC++++
  CCE28941.1 406 MCRECHHTI 414
                 588888765 PP

>> DUF5446  Family of unknown function (DUF5446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.55   6.1e+02      30      57 ..     264     291 ..     261     297 .. 0.85
   2 ?   -0.9   0.1       1.7   1.9e+03      39      58 ..     582     601 ..     574     612 .. 0.72
   3 ?    7.5   0.2    0.0041       4.6      36      68 ..     626     658 ..     604     662 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.55
     DUF5446  30 eavneteaekeekeeerldllekElkdL 57 
                 +a  + ++ k + ++  +++lek l  L
  CCE28941.1 264 SAFAAMRQKKVQRQNLEVSRLEKRLTKL 291
                 67778899999999999*****999877 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.7
     DUF5446  39 keekeeerldllekElkdLv 58 
                 + ++   ++++le E kdL+
  CCE28941.1 582 AASESSTIVSQLETEEKDLK 601
                 55666677788888877764 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0041
     DUF5446  36 eaekeekeeerldllekElkdLvlCigklekae 68 
                 + e   +    ld lekE++ L + ig+ e+  
  CCE28941.1 626 RFEEVGALSSNLDELEKEIAQLRIKIGDAEQKW 658
                 55555666788****************998865 PP

>> zf-C2HC5  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.71     8e+02      36      46 ..      82      92 ..      75     100 .. 0.77
   2 ?    9.5   1.0   0.00085      0.95      18      33 ..     205     220 ..     193     226 .. 0.84
   3 ?    4.1   0.3     0.041        46      33      44 ..     339     349 ..     333     358 .. 0.79
   4 ?    5.1   1.8      0.02        23      19      38 ..     358     375 ..     353     379 .. 0.85
   5 ?   -2.4   0.1       4.5     5e+03      36      48 ..     406     418 ..     401     421 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.71
    zf-C2HC5 36 pCsfCgsplls 46
                 C+ C++++++
  CCE28941.1 82 VCPICNEEMVT 92
                7*****99987 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00085
    zf-C2HC5  18 pnClnCGkiiCakegl 33 
                  nC +CGk  C+++ +
  CCE28941.1 205 INCRHCGKLFCEQHTM 220
                 69**********9977 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.041
    zf-C2HC5  33 lskpCsfCgspl 44 
                 + ++C+fC++++
  CCE28941.1 339 V-AKCPFCQQEF 349
                 4.89*****986 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.02
    zf-C2HC5  19 nClnCGkiiCakeglskpCs 38 
                  C  CG ++Ca  +    Cs
  CCE28941.1 358 HCRICGRVVCADAAT--ACS 375
                 699*******99887..776 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 4.5
    zf-C2HC5  36 pCsfCgspllsse 48 
                  C  C++ ++ss 
  CCE28941.1 406 MCRECHHTIFSSR 418
                 6888988888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1369  (0.0763567); expected 358.6 (0.02)
Passed bias filter:                      819  (0.0456802); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 4605.17
//
Query:       CCE28942.1  [L=751]
Description: related to p33ING1b (ING1) protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-06   28.0   7.4    2.7e-06   27.2   7.4    1.5  1  PHD         PHD-finger
    0.00082   19.9   0.3    0.00082   19.9   0.3    3.0  2  ING         Inhibitor of growth proteins N-terminal histone-b
  ------ inclusion threshold ------
      0.069   13.6   0.8        0.2   12.2   0.8    1.7  1  Na_Ca_ex_C  C-terminal extension of sodium/calcium exchanger 
       0.13   12.5   4.5       0.11   12.8   2.5    1.9  2  zf-HC5HC2H  PHD-like zinc-binding domain


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   7.4     6e-10   2.7e-06       1      51 [.     692     740 ..     692     741 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 6e-10
                 SBTTTTSTTSTTSCEEEET..TTSC.EEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   1 rCavCkkksdeeeelvqCd..gCkr.wfHqkClkppleseekpegewlCekCke 51 
                 +C  C++     +e+v Cd  gC+r wfH +C+++++   + ++++w+Ce Ck 
  CCE28942.1 692 YC-YCNS--VSYGEMVACDadGCEReWFHLACVGLKVA--PGSKTKWYCEDCKD 740
                 68.9999..679******6448*854**********99..555568******95 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.3   1.8e-07   0.00082       3      92 ..      62     184 ..      60     189 .. 0.68
   2 ?   -2.1   1.7       1.3   5.9e+03      32      70 ..     630     667 ..     625     672 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.8e-07
                 HHHHTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.................................TS..S-HHHHHHHHHHHHHHHHH CS
         ING   3 edyldsvenLPlelqrnltelreiDakvqellkeidskiekfl.................................kngslqknekeeelsriqeelke 68 
                  ++ d  ++LP+el r++t+l+e+Dak+    +++ + + +                                      + ++ ++++ +++   +++e
  CCE28942.1  62 THFADGMSALPKELVRHFTLLKEVDAKIFAPEEQLFKLVAETAklpapnttqsvasnqahsfpagddaaasaaptiDVFDPSNIPRRQLFRQTAVKIQE 160
                 68999**********************977776665555555555566666666666666666777766666665544445556666666666666666 PP

                 HHHHHHHHHHHHHHHHHHHHHHHH CS
         ING  69 aqelldeKiqlaqqaldlvdkhlr 92 
                 +  +l+eK ++  +a + ++++l 
  CCE28942.1 161 MLVSLEEKNHVLCTANEALQRQLA 184
                 667777777777777777666665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHTS..S-HHHHHHHHHHHHHHHHHHH CS
         ING  32 ellkeidskiekflkngslqknekeeelsriqeelkeaq 70 
                 +++ +++s+ ++ + n+s++ ++ +++ s  q++l++  
  CCE28942.1 630 NNTSNNNSHSHSNS-NSSNNRKSHKKSSSAAQQSLIQQV 667
                 44444555555555.666666666666668888887765 PP

>> Na_Ca_ex_C  C-terminal extension of sodium/calcium exchanger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.8   4.4e-05       0.2      20      99 ..     218     289 ..     205     292 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.4e-05
  Na_Ca_ex_C  20 gvivetegeleekeegvellldgklveea...eeseeakdleesrkevirilkelkqkyPdkdleqleelanyeaLskqqKSR 99 
                 g + +te              dg ++ +a   +  eea    ++rk++++  k+lk ++ d+d+++le+   +e+ +k+ KSR
  CCE28942.1 218 GKVSQTERM----------RRDGAAAISAaaqALAEEAAARSDARKQAVQARKNLKTQHHDSDADDLEKRP-KEVPKKGGKSR 289
                 444444433..........333333322222234566677789************************9864.44556666666 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.8     8e+03      60      75 ..     168     183 ..     166     189 .. 0.75
   2 ?   12.8   2.5   2.4e-05      0.11       9      66 ..     665     721 ..     658     740 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
  zf-HC5HC2H  60 afHvtCakeaglllee 75 
                 + Hv C +++ l+ + 
  CCE28942.1 168 KNHVLCTANEALQRQL 183
                 5699999999887765 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.4e-05
  zf-HC5HC2H   9 pevvfeeekeiemeeiedvekikkerkklkCylCkkkvGaciqCskkkCkk.afHvtCa 66 
                 ++v  ++ ++   +++ed e +  + + + Cy+ + ++G ++ C++  C++  fH+ C 
  CCE28942.1 665 QQVHAADVNN--SVQVEDEEGEIDADEPTYCYCNSVSYGEMVACDADGCEReWFHLACV 721
                 5555555554..7888999999999999999977788************8637*****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2050  (0.11434); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.30u 0.36s 00:00:01.66 Elapsed: 00:00:00.59
# Mc/sec: 3809.80
//
Query:       CCE28943.1  [L=1722]
Description: related to retrotransposon HobS hobase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-29  102.5   0.0    6.2e-29  101.3   0.0    1.5  1  RVT_2            Reverse transcriptase (RNA-dependent DNA pol
    1.5e-12   47.7   0.4    5.7e-12   45.9   0.1    2.2  2  rve              Integrase core domain
    0.00044   20.1   0.1     0.0012   18.7   0.1    1.7  1  gag_pre-integrs  GAG-pre-integrase domain


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0     1e-32   6.2e-29      10     234 ..    1241    1467 ..    1231    1475 .. 0.86

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 1e-32
       RVT_2   10 kdrkaigsrWvftkkkddl.kevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnae...ldeevyvkqPpG 102 
                     ++i+ +Wvf  k dd+    + karl ++G  q  +   + ++a  +  ++ r+++al a  +l+  q+dv+ afL a       +v    P G
  CCE28943.1 1241 ARSRPIPLKWVFSYKFDDKgILQRCKARLCVRGDLQEKS-TIQSTYAATLAAHAFRIFIALVARFGLLTRQFDVKNAFLYALrhgYMTPVTCELPDG 1336
                  3469************999778899*********99865.6899**********************************987511134569999**** PP

       RVT_2  103 feidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegklivalyvddlliags..dikiledvkkelakkfklkdlg 197 
                  f+i    + +++L ++lyGl+ +p lW+ek+ ++++ lg+ +s  e  l+        +++  +vdd++ia +  + ++ e++   l++ f+l d g
  CCE28943.1 1337 FKIP---GICVELLRALYGLQDSPALWFEKLCSTITTLGLIQSLEEPCLFYSE--ARDIFLIFFVDDIIIAYHpdQEELAEQFITGLKEAFELDDKG 1428
                  **97...9*****************************************9876..4559999********853214567799*************** PP

       RVT_2  198 kvskfLGieiaq..eaggiklsladyiakvvkkfeltda 234 
                   v++fLGi++++      i ls ++yi+k+ +kf+ +++
  CCE28943.1 1429 AVHFFLGIQVIRdlPHRRIFLSHEAYINKLGDKFDQASN 1467
                  ***********933356788999*******999987655 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.1   9.5e-16   5.7e-12       2     115 ..     609     727 ..     608     730 .. 0.91
   2 ?   -2.5   0.0      0.92   5.5e+03      62      79 ..    1632    1649 ..    1594    1668 .. 0.61

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 9.5e-16
         rve   2 trpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsde..mdastvlalleravarfggvepervlsDngseytsk....afrefladlgir 93 
                 +rp ++++ D+  + +  +++g ++llv+ d +s++i + al+d+  ++  +++a  e  v r++++++ +++ Dn ++++s      f+++++  gi+
  CCE28943.1 609 HRPFWRVHWDLQdYTD--GYNGMKWLLVFKDEYSKFIQTQALPDKslDTVFNAIAYFESWVHRQFNLRIAKLRQDNERAVISDnaptVFQKWAKAQGIE 705
                 89**********6555..99999**********************66666666777788888888888*************99***9************ PP

         rve  94 vsftrpgrpqdnGkvErfhrtl 115
                 +++++p+  + nG +Er+++t+
  CCE28943.1 706 LERSPPYTHEPNGSAERANQTI 727
                 ********************98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.92
         rve   62 fggve..pervlsDngseyt 79  
                  f   +    ++++Dn+ +++
  CCE28943.1 1632 FD--TqeDMVIHCDNMQTIR 1649
                  22..2447899999998776 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1     2e-07    0.0012      15      65 ..     541     593 ..     527     595 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2e-07
  gag_pre-integrs  15 vslsk..nkssinlWHrRLGHpsfsrlkkLfkkgllpglki..sksevCeaCqlg 65 
                      +s+++   +++ +lWH R GH++ ++lk+L+     +g+ i   + + C +C l+
       CCE28943.1 541 TSFASfpRTDTEELWHLRSGHLGKDALKRLA--LYARGVRIkgTERKDCVTCSLT 593
                      456663358999*******************..4555555511557799999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.44
# Mc/sec: 11762.32
//
Query:       CCE28944.1  [L=585]
Description: uncharacterized protein CPUR_02634 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0092   15.9   0.0      0.027   14.3   0.0    1.9  1  F-box-like  F-box-like
  ------ inclusion threshold ------
       0.15   12.5   2.3        8.1    7.0   0.0    4.1  4  LRR_4       Leucine Rich repeats (2 copies)
       0.16   11.6   0.0       0.29   10.7   0.0    1.3  1  NodS        Nodulation protein S (NodS)
        1.7    9.5   6.5         67    4.6   0.1    5.8  8  LRR_1       Leucine Rich Repeat
        9.6    6.6   7.4        3.4    8.0   0.1    3.9  5  LRR_6       Leucine Rich repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.6e-06     0.027       2      47 ..     132     186 ..     131     187 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.6e-06
  F-box-like   2 srLPdEiLlqIFsy.........Lpps..dLlrlalVCrrWrrvaldtplLWrrlvl 47 
                  rLP E+L +I +          L ++  dL +l l++r+ +  +l+t  L+r++++
  CCE28944.1 132 ERLPSEVLGDIIDLlvveippngLTTRntDLMALLLTSRSIHATTLTT--LYRHITI 186
                 69**********643333333346555679***************877..****986 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.12   4.4e+02      19      33 ..     273     286 ..     261     297 .. 0.68
   2 ?    7.0   0.0    0.0023       8.1       2      33 ..     334     367 ..     333     372 .. 0.80
   3 ?   -0.7   0.1      0.61   2.2e+03      22      31 ..     416     426 ..     407     449 .. 0.63
   4 ?   -1.4   0.0         1   3.7e+03       2      15 ..     473     484 ..     472     493 .. 0.54

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.12
                 HHH-TT--EEE-.-S CS
       LRR_4  19 leklpnLkeLdLsgN 33 
                 +  +pnL+ Ld  g+
  CCE28944.1 273 F-DMPNLQALDFCGC 286
                 3.59****9996455 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0023
                 S--EEE--SS---E-S-HHH-TT...--EEE-.-S CS
       LRR_4   2 nLevLdLsnNqltdiplleklpn...LkeLdLsgN 33 
                 nL++Ld +++++t    le++p+     +L+L  +
  CCE28944.1 334 NLTHLDVAGTRIT-NKALESIPStarISHLNLAKC 367
                 9***********9.557887777777888888655 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.61
                 -TT.--EEE-. CS
       LRR_4  22 lpn.LkeLdLs 31 
                 lp+ Lk+L+L 
  CCE28944.1 416 LPKtLKSLSLR 426
                 56667777762 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1
                 S--EEE--SS---E CS
       LRR_4   2 nLevLdLsnNqltd 15 
                 nL +Ld+++  + +
  CCE28944.1 473 NLSYLDIAD--IDS 484
                 444444444..444 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.1e-05      0.29      50      97 ..     482     529 ..     473     532 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.1e-05
        NodS  50 vGcaaGalterlapyckrltvvdvveeaiararervkesshiswivsd 97 
                 +    G+ +  lap c  l v+++ e+a +ra +  ++  ++ w++++
  CCE28944.1 482 IDSIVGSASPLLAPACAPLQVIEIEERAYERAAKLSRNLQKVGWVTKE 529
                 55566777888*********************************9875 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         3   1.1e+04      13      22 ..      73      82 ..      57      83 .. 0.66
   2 ?   -1.2   0.0       1.6   5.7e+03       2      17 ..     100     115 ..      99     122 .. 0.78
   3 ?   -2.8   0.0         5   1.8e+04       7      18 ..     126     137 ..     125     139 .. 0.78
   4 ?    4.6   0.1     0.019        67       1      20 [.     277     295 ..     277     326 .. 0.73
   5 ?    1.9   0.0      0.15   5.4e+02       1      13 [.     334     346 ..     334     357 .. 0.75
   6 ?   -2.2   0.0       3.4   1.2e+04       4      11 ..     361     368 ..     358     372 .. 0.80
   7 ?   -0.4   0.1      0.84     3e+03       2      12 ..     420     430 ..     419     448 .. 0.63
   8 ?   -3.4   0.0         5   1.8e+04       1       7 [.     473     479 ..     473     482 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3
       LRR_1 13 lglppnsfqn 22
                + +pp+sf++
  CCE28944.1 73 FWFPPDSFKG 82
                6789999985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.6
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 Lr+L +++ +++  pp
  CCE28944.1 100 LRKLSMTWDSPPATPP 115
                 99****9999855444 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5
       LRR_1   7 Lsnnpllglppn 18 
                 ++n pl++lp++
  CCE28944.1 126 IGNSPLERLPSE 137
                 678899999875 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.019
       LRR_1   1 nLrhLdLsnnpllglppnsf 20 
                 nL+ Ld ++++     +nsf
  CCE28944.1 277 NLQALDFCGCSS-TAFKNSF 295
                 8**********8.2333333 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.15
       LRR_1   1 nLrhLdLsnnpll 13 
                 nL+hLd+ + +++
  CCE28944.1 334 NLTHLDVAGTRIT 346
                 8*****9888764 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 3.4
       LRR_1   4 hLdLsnnp 11 
                 hL+L  + 
  CCE28944.1 361 HLNLAKCK 368
                 9**99885 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 0.84
       LRR_1   2 LrhLdLsnnpl 12 
                 L++L L++ + 
  CCE28944.1 420 LKSLSLRGSRM 430
                 99999988774 PP

  == domain 8  score: -3.4 bits;  conditional E-value: 5
       LRR_1   1 nLrhLdL 7  
                 nL +Ld+
  CCE28944.1 473 NLSYLDI 479
                 8999998 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.4       4.8   1.7e+04       2       8 ..     174     180 ..     173     180 .. 0.82
   2 ?    8.0   0.1   0.00094       3.4       4      23 ..     334     353 ..     334     353 .. 0.92
   3 ?   -2.2   0.0       1.8   6.3e+03       7      16 ..     361     371 ..     359     373 .. 0.77
   4 ?   -0.1   0.0      0.35   1.3e+03       4      12 ..     419     427 ..     417     430 .. 0.86
   5 ?   -2.7   0.0       2.5   9.1e+03       4      11 ..     473     480 ..     472     481 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.8
       LRR_6   2 nthLteL 8  
                  t+Lt+L
  CCE28944.1 174 ATTLTTL 180
                 689**98 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00094
       LRR_6   4 hLteLdLsgNdIgDeGaeaL 23 
                 +Lt+Ld++g  I+++ +e++
  CCE28944.1 334 NLTHLDVAGTRITNKALESI 353
                 69************999886 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.8
       LRR_6   7 eLdLsgNd.Ig 16 
                 +L+L+ ++ ++
  CCE28944.1 361 HLNLAKCKeLS 371
                 89**9998665 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.35
       LRR_6   4 hLteLdLsg 12 
                 +L++L+L+g
  CCE28944.1 419 TLKSLSLRG 427
                 9******97 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 2.5
       LRR_6   4 hLteLdLs 11 
                 +L +Ld++
  CCE28944.1 473 NLSYLDIA 480
                 56677765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4415.87
//
Query:       CCE28945.1  [L=862]
Description: probable vacuolar ATP synthase 98 kDa subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
          0 1042.3   0.0          0 1042.1   0.0    1.0  1  V_ATPase_I       V-type ATPase 116kDa subunit family
      0.008   14.4   7.1       0.16   10.2   0.8    2.2  2  EzrA             Septation ring formation regulator, EzrA
  ------ inclusion threshold ------
      0.026   14.6   0.1         17    5.6   0.2    3.4  3  YojJ             Bacterial membrane-spanning protein N-termin
      0.048   13.9   1.4       0.52   10.5   0.1    2.7  3  SesA             N-terminal domain on NACHT_NTPase and P-loop
      0.055   13.5   2.1       0.16   11.9   0.3    2.2  2  Serine_rich      Serine rich protein interaction domain
      0.063   13.3   5.5        1.2    9.1   0.2    2.4  2  Laminin_II       Laminin Domain II
      0.066   12.6   1.5        6.4    6.1   0.1    2.5  2  DUF3552          Domain of unknown function (DUF3552)
      0.084   12.4   2.1        1.7    8.2   0.2    2.1  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.092   12.7   0.0       0.23   11.4   0.0    1.7  1  Tnp_22_trimer    L1 transposable element trimerization domain
        0.1   12.5   4.2       0.12   12.2   0.5    2.1  2  CheZ             Chemotaxis phosphatase, CheZ
       0.13   12.3   4.3        3.6    7.7   0.4    3.1  2  DUF1664          Protein of unknown function (DUF1664)
       0.17   11.9   1.7        0.4   10.7   0.1    2.4  2  DUF1515          Protein of unknown function (DUF1515)
       0.23   10.3   4.8        2.8    6.7   0.7    2.2  2  Spc7             Spc7 kinetochore protein
       0.47   10.0  10.9        1.7    8.2   0.8    2.7  2  Filament         Intermediate filament protein
        0.7    9.7   6.3          4    7.2   0.2    2.9  3  Mer2             Mer2
       0.78    9.1   4.4        4.3    6.7   0.8    2.1  2  HMMR_N           Hyaluronan mediated motility receptor N-term
        0.9    9.0   6.7          2    7.8   0.8    2.2  2  Golgin_A5        Golgin subfamily A member 5
       0.95    9.9   7.7        7.2    7.1   1.1    3.3  2  Snapin_Pallidin  Snapin/Pallidin
        1.2    9.7   6.0         11    6.6   0.4    2.6  2  ZapB             Cell division protein ZapB
        1.2    9.1   4.9         13    5.8   0.2    2.8  3  Prefoldin_2      Prefoldin subunit
        1.8    8.7   7.3          7    6.7   2.4    2.6  2  DHR10            Designed helical repeat protein 10 domain
        2.1    8.8   6.2        1.7    9.1   1.0    2.5  2  DUF4140          N-terminal domain of unknown function (DUF41
        2.3    7.5   6.6        1.3    8.2   0.4    2.4  2  DUF3450          Protein of unknown function (DUF3450)
        2.4    8.7   6.6        5.1    7.6   0.4    2.6  2  UPF0449          Uncharacterised protein family UPF0449
        2.7    7.8  10.5       0.67    9.8   0.4    3.3  3  DivIC            Septum formation initiator
        2.8    8.0   6.4        3.5    7.7   1.0    2.6  2  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP


Domain annotation for each model (and alignments):
>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1042.1   0.0         0         0       2     813 .]      32     847 ..      31     847 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1042.1 bits;  conditional E-value: 0
  V_ATPase_I   2 eLGelglvqfrDlnedvnafqrkfvkevrrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkeln 100
                 +LGelgl qfrDlnedv+afqr+f++e+rr+d++er+lr+++++++k+  + +k + ++++l++p+++e+del e+ +kle++++ ln+++e+lkk+  
  CCE28945.1  32 ALGELGLCQFRDLNEDVSAFQRTFTQEIRRLDNVERQLRYFHSQMDKTGITLRKLDLDTDRLASPSTSEIDELAERSQKLEQRVSALNDSYETLKKREG 130
                 69*********************************************888888888889**************************************** PP

  V_ATPase_I 101 elvelkavlekakefleee.eeeeeeeeseeeeee..keeeeeeeseeeeeeelleeeeelsfvaGvikrekveaferilwralrgnlflrqaeieepl 196
                 +l+e+++vl++a +f++++  + e+ + s++++++   ++ e+++++ e  e+ + + ++++fvaGvi re+v+aferilwr+lrgnl+++q+ei+epl
  CCE28945.1 131 DLTEWRWVLREAGSFFDRAhGNVEDIRASTDSDDAplLSDIEQHREAPEV-ER-SFSGMNIGFVAGVIGRERVAAFERILWRTLRGNLYMNQSEIPEPL 227
                 *****************985444444444444444543333333333332.22.3344669************************************** PP

  V_ATPase_I 197 edpetgekveksvfiiffqgeqlkekikkicesfgaklyelpeseeereeklkeveeriedlekvleqteealkevleeiakeleewklkvkkekaiyh 295
                 +dp+++e ++k+vf+if++g+++ +ki+ki es+ga++y+++e+++ r+++++ev++r++d+++vl++t+++l+++l++i+++l++w++ + keka+y+
  CCE28945.1 228 IDPSNNEAINKNVFVIFAHGKEILAKIRKISESMGADVYNVDENSDLRRDQIHEVNNRLQDVQNVLRNTQTTLEAELKQISQSLSAWMVLIAKEKAVYS 326
                 *************************************************************************************************** PP

  V_ATPase_I 296 tLnlfnldvtkkvliaegWvpkeeleeiqkalkeateessssvpsilneietketpPTyfrtnkfteafQeivdaYGiarYrEvNpalftiitFPFlFa 394
                 tLn+f++d+++++liae+W+p+++l+ i+++l+++t++++ svp i+nei+t++tpPTy +tnkfte+fQ+iv+aYG+a+Y+EvNpa+   +tFPFlFa
  CCE28945.1 327 TLNMFSYDRARRTLIAEAWCPTNDLSLIRSTLQDVTNRAGLSVPCIINEIRTNKTPPTYLKTNKFTEGFQTIVNAYGTASYQEVNPAMPVFVTFPFLFA 425
                 *************************************************************************************************** PP

  V_ATPase_I 395 vMFGDiGHGlllllfalllvlkekklkkkkkdeilemlfsgRYiillmGlfsiYtGliYNdifskslnlfgSswevkeka...veeeelk...kekkee 487
                 vMFGD+GH++++l +al+++++ek+lkk  + e+++m+f gRYi l+m++fs++tGliYNd+fsks++lf S+w+ ++ +     +   +   + ++++
  CCE28945.1 426 VMFGDFGHAIIMLSAALAMIYWEKSLKKV-SFELFAMIFYGRYIALVMAVFSVFTGLIYNDVFSKSMTLFPSAWHYPRPEhyePGQ---TivaELNDNG 520
                 ***************************98.68********************************************7666433122...2344888999 PP

  V_ATPase_I 488 kvYpfGlDpaWklaenellflnSlKmKlsvilGviqMlfgvllslvNalyfkkkldiilefiPqllfllsifgYlvlliiyKWlvdwea.....ekeka 581
                   YpfGlD+aW+++en llf+nS+KmK+s+ilG+++M++++++ ++Na +fk+ +di+ +f+P+++f++sifgYlv++iiyKW+vdw++     + + +
  CCE28945.1 521 YRYPFGLDWAWHGTENTLLFSNSYKMKMSIILGWAHMTYSLCFAYINAKHFKRPIDIWGNFVPGMIFFQSIFGYLVVCIIYKWTVDWTNpdpaiGGQ-P 618
                 9**************************************************************************************9678986555.9 PP

  V_ATPase_I 582 psllntlinmflskgkvkeeelyegqetvqvvLlllalvcvpvlllvkPlilklkhkkkkkkkekkkeeeeeeeeeeeeeeeeeeeeaeeeeeeeeeee 680
                 p+lln+li+mfl++g+  + +ly+gq+tvq +Lllla+v+vp+ll++kP++l+++h+++++k+++   e+++ ++ + ++e+e   ++ ++++ +e+ e
  CCE28945.1 619 PGLLNMLIYMFLQPGTL-DIPLYKGQATVQLLLLLLAFVQVPILLFLKPFYLRWEHNRARAKGYRGIGETSRVSALDGDDENEGL-ANGHSDSFDEDGE 715
                 ****************9.99*********************************************99998753333333333222.2333333444455 PP

  V_ATPase_I 681 eeeeeeeeeeeeeeefdfgevfihqvIhtIEfvLgciSnTASYLRLWALSLAHaqLseVlwemvlkkallksksvlgvillvilfavfavltvavLllm 779
                   +  +++ +ee+eef+f+ev+ihq+IhtIEf+L+c+S+TASYLRLWALSLAH+qLs Vlw+m++++ +l++++v+gv+++v++f+++++lt+a+L+ m
  CCE28945.1 716 GVAMISQNIDEEHEEFEFSEVMIHQIIHTIEFCLNCVSHTASYLRLWALSLAHQQLSIVLWDMTIAN-TLAMEGVVGVLMIVVGFYLWFFLTIAILVAM 813
                 5556667778999******************************************************.6699*************************** PP

  V_ATPase_I 780 eglsafLHaLRLhWVEfqsKFykgdGykFepfsf 813
                 eg+sa+LH+LRL WVE+ sKF + +G +F+pfsf
  CCE28945.1 814 EGTSAMLHSLRLAWVESFSKFAEFAGWPFAPFSF 847
                 *********************************9 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.8   0.00023      0.16     281     366 ..      42     128 ..      39     132 .. 0.88
   2 !    7.3   0.8    0.0016       1.1     228     300 ..     251     324 ..     246     331 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00023
                 HHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSHHHHT--HHHHTTGGG-TTTS-GGGSS.TTTSTTHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 281 ktieeeidsLyddlekEveAkkeveknlkelkeklehlekqnkelkeeldrlkqsYeLs.eeeleklrelekelkelekdyeeleek 366
                 ++++e++ ++  ++++E++  ++ve++l+ + ++++++   +++l  ++drl    + + +e  e+ ++le++++ l+++ye+l+++
  CCE28945.1  42 RDLNEDVSAFQRTFTQEIRRLDNVERQLRYFHSQMDKTGITLRKLDLDTDRLASPSTSEiDELAERSQKLEQRVSALNDSYETLKKR 128
                 6789999999******************************************9755544156678999**************99886 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHSTTS--SGGGS.SS.SSHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 228 leelkegykemkeegYaleel.ni.ekeieelekkieeilerlkeleledveeelktieeeidsLyddlekEveA 300
                 l++++++ + m ++ Y+++e+ ++   +i+e++++++++ + l++++ +  e+elk+i++ + +   ++ kE++ 
  CCE28945.1 251 LAKIRKISESMGADVYNVDENsDLrRDQIHEVNNRLQDVQNVLRNTQ-TTLEAELKQISQSLSAWMVLIAKEKAV 324
                 67899999999999999999854425689999999999999999887.568999999999999999999999875 PP

>> YojJ  Bacterial membrane-spanning protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       7.4   5.1e+03      56      56 ..      54      54 ..      38      80 .. 0.50
   2 ?    4.6   0.0     0.049        34      21      48 ..     149     176 ..     142     185 .. 0.85
   3 ?    5.6   0.2     0.024        17      15      52 ..     276     313 ..     271     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7.4
        YojJ 56 l 56
                +
  CCE28945.1 54 T 54
                2 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.049
        YojJ  21 iekeleevlkaldeedeClLcelesire 48 
                 + +++e+++++ d++d  lL+++e+ re
  CCE28945.1 149 AHGNVEDIRASTDSDDAPLLSDIEQHRE 176
                 6789********************9554 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.024
        YojJ  15 keeLeqiekeleevlkaldeedeClLcelesirekfae 52 
                 + ++ ++ ++l++v + l + +  l  el++i ++++ 
  CCE28945.1 276 RDQIHEVNNRLQDVQNVLRNTQTTLEAELKQISQSLSA 313
                 468999**************************998875 PP

>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.72     5e+02      26      83 ..      53     115 ..      41     143 .. 0.61
   2 ?   10.5   0.1   0.00075      0.52      24      55 ..     275     306 ..     252     332 .. 0.77
   3 ?   -1.9   0.0       5.2   3.6e+03      34      49 ..     350     365 ..     348     368 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.72
        SesA  26 eaFrevgkrLplvqetLedaksqlesskldedtesa.....ikpvlesckekatkleeifekv 83 
                 ++F +  +rL  v+  L+ ++sq+++  +   +        + p+  + +e a++ +++ + v
  CCE28945.1  53 RTFTQEIRRLDNVERQLRYFHSQMDKTGITLRKLDLdtdrlASPSTSEIDELAERSQKLEQRV 115
                 555555556666666666666555554332222222222227888888888888888887777 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00075
        SesA  24 lpeaFrevgkrLplvqetLedaksqlesskld 55 
                  +  ++ev++rL+ vq++L+ ++++le++ ++
  CCE28945.1 275 RRDQIHEVNNRLQDVQNVLRNTQTTLEAELKQ 306
                 45789********************9987555 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 5.2
        SesA  34 rLplvqetLedaksql 49 
                  L l++ tL+d+++++
  CCE28945.1 350 DLSLIRSTLQDVTNRA 365
                 699********99875 PP

>> Serine_rich  Serine rich protein interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   0.00024      0.16      17     110 ..      44     139 ..      29     145 .. 0.88
   2 ?    0.4   0.1      0.86   5.9e+02      81     106 ..     278     303 ..     242     318 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
  Serine_rich  17 vesavskLlsfvsskWRskenleanlqeirlavdrlrtslrefleFargalanaaklsd..knlqtkLrkqlqkledsdqilqetsqeLdsceWsl 110
                  +++ vs+     +++ R  +n+e++l+  ++++d+   +lr++   +++ ++ +++  d   + ++kL++ +++l+ds+++l++   +L +  W l
   CCE28945.1  44 LNEDVSAFQRTFTQEIRRLDNVERQLRYFHSQMDKTGITLRKLDLDTDRLASPSTSEIDelAERSQKLEQRVSALNDSYETLKKREGDLTEWRWVL 139
                  6677888888899999**************************988888888888887775667789*************************99977 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.86
  Serine_rich  81 kLrkqlqkledsdqilqetsqeLdsc 106
                  ++++  ++l+d +++l +t+++L++ 
   CCE28945.1 278 QIHEVNNRLQDVQNVLRNTQTTLEAE 303
                  45666677788888888887777764 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2    0.0018       1.2      12      83 ..      62     130 ..      53     135 .. 0.91
   2 ?    5.7   1.0      0.02        14       2      54 ..     248     300 ..     245     321 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0018
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHH CS
  Laminin_II  12 akevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqlee 83 
                 + +v++ql   + ++++t   l +++ +   t+ +++ ++  i++  + ++kLe+ +  L d  ++lk++e 
  CCE28945.1  62 LDNVERQLRYFHSQMDKTGITLRKLDLD---TDRLASPSTSEIDELAERSQKLEQRVSALNDSYETLKKREG 130
                 6799***********************9...9999999999999988999******************9985 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.02
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II   2 kelaaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankai 54 
                 ke++a++ ++ ++  +++ ++++n +  +++++e+n+ ++ +++++++ ++++
  CCE28945.1 248 KEILAKIRKISESMGADVYNVDENSDLRRDQIHEVNNRLQDVQNVLRNTQTTL 300
                 45555566666666666666666666666666666666666666655544433 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0093       6.4      78     113 ..     102     137 ..      91     161 .. 0.73
   2 ?    5.0   0.1     0.021        14      90     157 ..     275     342 ..     250     347 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0093
     DUF3552  78 nelqrlekRllqkeetLdrkeeslekkeesleekek 113
                 +el++  ++l+q+  +L+   e+l+k+e +l+e + 
  CCE28945.1 102 DELAERSQKLEQRVSALNDSYETLKKREGDLTEWRW 137
                 567777777777777777777778877777777555 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.021
     DUF3552  90 keetLdrkeeslekkeesleekekelkqkeqsleekeeeleelveeqrqeLerisgLtkeeAkeille 157
                 + +++ + ++ l++ ++ l++++  l+++ +++++  +    l++++++    +  ++ + A+  l+ 
  CCE28945.1 275 RRDQIHEVNNRLQDVQNVLRNTQTTLEAELKQISQSLSAWMVLIAKEKAVYSTLNMFSYDRARRTLIA 342
                 55666666777777777777777777777777777777777788888887777777788888777765 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2    0.0024       1.7     173     253 ..      43     129 ..      18     182 .. 0.63
   2 ?    3.9   0.1     0.049        34     159     211 ..     267     322 ..     203     381 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0024
  Exonuc_VII_L 173 klasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.k......ekleekkerlkklkerlelleekkerleele 253
                    l+++++  ++ ++++ +rld++e++l+   ++q++k   +l++l   + +      ++++e +er +kl++r++ l+++ e+l++ e
    CCE28945.1  43 DLNEDVSAFQRTFTQEIRRLDNVERQLRY-FHSQMDKTGITLRKLDLDTdRlaspstSEIDELAERSQKLEQRVSALNDSYETLKKRE 129
                   44555555566666666666666666665.5555444444444444222112334455555555555555555554444444444433 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.049
  Exonuc_VII_L 159 aikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkq...lkkkr 211
                   +++++ + ++ +++++++rl++ +++l++ +  l+   ++++++l+     ++k++
    CCE28945.1 267 NVDENSDLRRDQIHEVNNRLQDVQNVLRNTQTTLEAELKQISQSLSAWmvlIAKEK 322
                   23334455556666666666666666665555555544444443332233233333 PP

>> Tnp_22_trimer  L1 transposable element trimerization domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00034      0.23       1      21 [.     107     127 ..     107     136 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00034
                    HHHHHHHHHHHHHHHHHHHHH CS
  Tnp_22_trimer   1 RidelEERvSaaEDeieeidr 21 
                    R ++lE RvSa  D+ e +++
     CCE28945.1 107 RSQKLEQRVSALNDSYETLKK 127
                    789**************9974 PP

>> CheZ  Chemotaxis phosphatase, CheZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   0.00018      0.12       4     116 ..      45     157 ..      42     161 .. 0.91
   2 ?    1.3   0.2       0.4   2.7e+02      21      72 ..     266     319 ..     245     348 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00018
                 XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CheZ   4 feeiGkltReLhdalrelgldekllekaaeeipdardrLeyvielTeqAAertldavekalpladklkeeakeleeewerllerelekeefrelvkeve 102
                  e +  + R+  + +r l   e++l+  ++++  +   L+     T++ A+ + + +++ +   +kl++++++l++++e+l++re +++e r +++e  
  CCE28945.1  45 NEDVSAFQRTFTQEIRRLDNVERQLRYFHSQMDKTGITLRKLDLDTDRLASPSTSEIDELAERSQKLEQRVSALNDSYETLKKREGDLTEWRWVLREAG 143
                 567778889999999999977899999999999999999999999****************************************************** PP

                 XXXXXXXXXXXXXX CS
        CheZ 103 aflkeveektealk 116
                 +f+++++ + e+++
  CCE28945.1 144 SFFDRAHGNVEDIR 157
                 ****9998887766 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.4
                 XXXX.XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CheZ  21 lgldekllekaaeeipdardrLe...yvielTeqAAertldavekalpladklke 72 
                 +++d ++++  +++i++ ++rL+    v++ T++  e  l+ + ++l+    l +
  CCE28945.1 266 YNVD-ENSDLRRDQIHEVNNRLQdvqNVLRNTQTTLEAELKQISQSLSAWMVLIA 319
                 3444.55555666666666666511133445555555555555555555555544 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.3     0.042        29      50     121 ..      41     119 ..      27     134 .. 0.69
   2 ?    7.7   0.4    0.0052       3.6      41      82 ..     277     318 ..     243     329 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.042
     DUF1664  50 leqvseslaatkrhLssridrvd...kkldeqkeiskeikeevtevredlseig....edvesvkeaveglesklerie 121
                   ++ e+++a +r ++++i r+d   ++l        ++   + ++  d++++     ++++++ e  ++le++++ ++
  CCE28945.1  41 FRDLNEDVSAFQRTFTQEIRRLDnveRQLRYFHSQMDKTGITLRKLDLDTDRLAspstSEIDELAERSQKLEQRVSALN 119
                 5667788888888888877655511155666666666666667777777776642222567777777777877777665 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0052
     DUF1664  41 davesvskqleqvseslaatkrhLssridrvdkkldeqkeis 82 
                 d +++v ++l++v++ l++t+  L+++++++ ++l + + ++
  CCE28945.1 277 DQIHEVNNRLQDVQNVLRNTQTTLEAELKQISQSLSAWMVLI 318
                 556677777777777777777777777777777777666555 PP

>> DUF1515  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00058       0.4      36      78 ..      95     137 ..      42     145 .. 0.82
   2 ?   -1.4   0.1       3.3   2.3e+03      26      73 ..     267     311 ..     244     319 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00058
     DUF1515  36 akmyrkmdelvervtalegsvvklkaditsvkevtedvkkwkl 78 
                 +  +  +del er + le  v++l++   ++k+   d++ w+ 
  CCE28945.1  95 SPSTSEIDELAERSQKLEQRVSALNDSYETLKKREGDLTEWRW 137
                 4557789********************************9974 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.3
     DUF1515  26 rsedrsdasrakmyrkmdelvervtalegsvvklkaditsvkevtedv 73 
                 + ++ sd  r ++++  + l +  + l  + ++l+   +++k++++ +
  CCE28945.1 267 NVDENSDLRRDQIHEVNNRLQDVQNVLRNTQTTLE---AELKQISQSL 311
                 44444444444444333333333333333333333...2344444444 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.7    0.0041       2.8     208     281 ..      41     114 ..      39     136 .. 0.88
   2 ?    5.1   0.2     0.013       8.9     157     274 ..     267     310 ..     241     332 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0041
        Spc7 208 laelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleel 281
                 +++l+++++++++  ++  ++l+++e ++   ++q++++   +++ +  +++  + s+se+++l e+ ++le+ 
  CCE28945.1  41 FRDLNEDVSAFQRTFTQEIRRLDNVERQLRYFHSQMDKTGITLRKLDLDTDRLASPSTSEIDELAERSQKLEQR 114
                 56788999999999999999999999999999999999999999999999999999999999999999999986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.013
        Spc7 157 lLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaer 255
                 +++                                                                          e+ +  ++q++e++++++  ++
  CCE28945.1 267 NVD--------------------------------------------------------------------------ENSDLRRDQIHEVNNRLQDVQN 291
                 333..........................................................................3333333333333333333333 PP

        Spc7 256 vleeckgwsesevsrlkee 274
                 vl++++   e e++++ ++
  CCE28945.1 292 VLRNTQTTLEAELKQISQS 310
                 3333333333333333332 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   3.4     0.026        18      76     124 ..      40      90 ..      37     129 .. 0.72
   2 ?    8.2   0.8    0.0024       1.7     215     278 ..     248     311 ..     231     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.026
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXX CS
    Filament  76 eldnlreeledlrkkyekelnkreevEaelkalrkdldea..tlarvdLek 124
                 + ++l+e++  ++  + +e+++ ++vE++l+ +  ++d++  tl+++dL++
  CCE28945.1  40 QFRDLNEDVSAFQRTFTQEIRRLDNVERQLRYFHSQMDKTgiTLRKLDLDT 90 
                 66789999999********************99977776433667777664 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0024
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 215 keeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireem 278
                 ke ++++r+  +s+ +++ ++ ++++  ++q++e+++rl+   + l+++ + le+el++i + +
  CCE28945.1 248 KEILAKIRKISESMGADVYNVDENSDLRRDQIHEVNNRLQDVQNVLRNTQTTLEAELKQISQSL 311
                 3344667777789999*******************************************98876 PP

>> Mer2  Mer2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.3     0.045        31      34      78 ..      85     129 ..      83     138 .. 0.88
   2 ?    7.2   0.2    0.0059         4     131     183 ..     249     301 ..     222     314 .. 0.79
   3 ?   -1.0   0.0       1.8   1.3e+03     137     165 ..     718     746 ..     711     754 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.045
        Mer2  34 KLELEsvdLrEksskLinvlkenskeLlkvisklnellidlkeee 78 
                 KL+L++  L   s + i +l e s++L + +s ln+    lk+ e
  CCE28945.1  85 KLDLDTDRLASPSTSEIDELAERSQKLEQRVSALNDSYETLKKRE 129
                 8999999999999999********************998777754 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0059
        Mer2 131 llekkeakileeidkkqtkleksvdttqelllnvnkQledvnevllSlskdle 183
                 ++  k  ki+e + +   ++ +  d+ ++ ++ vn+ l+dv++vl   ++ le
  CCE28945.1 249 EILAKIRKISESMGADVYNVDENSDLRRDQIHEVNNRLQDVQNVLRNTQTTLE 301
                 4556678899999999999999**********************965544443 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.8
        Mer2 137 akileeidkkqtkleksvdttqelllnvn 165
                 a i+++id+ ++++e s  +++++++ + 
  CCE28945.1 718 AMISQNIDEEHEEFEFSEVMIHQIIHTIE 746
                 6799********************99876 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.054        38     227     302 ..      53     128 ..      27     143 .. 0.71
   2 ?    6.7   0.8    0.0062       4.3     233     296 ..     251     311 ..     244     328 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.054
      HMMR_N 227 eklleyieelsnvseqlekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekckllekekeelvre 302
                 +  +++i +l nv +ql  ++ ++++   +l + + +   L s    + +el ++ ++l+++++ l+ + e l ++
  CCE28945.1  53 RTFTQEIRRLDNVERQLRYFHSQMDKTGITLRKLDLDTDRLASPSTSEIDELAERSQKLEQRVSALNDSYETLKKR 128
                 4567788888888888877778888888888888888888877777777777777777777777777777644333 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0062
      HMMR_N 233 ieelsnvseqlekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekckllekek 296
                  ++++++se++     d+ ++ e+ + + d+i+++ + L++ +++l ++   l++++k++ +++
  CCE28945.1 251 LAKIRKISESM---GADVYNVDENSDLRRDQIHEVNNRLQDVQNVLRNTQTTLEAELKQISQSL 311
                 45666677777...88899999999999999999999999999989888888888888887765 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.6     0.039        27      43     110 ..      56     123 ..      41     140 .. 0.81
   2 ?    7.8   0.8     0.003         2      45     100 ..     261     316 ..     247     330 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.039
   Golgin_A5  43 talsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkake 110
                 t++   ld+++++   +++++ k+ +++++l  + ++l +  ++e+++l e+ q+le+++++ + + e
  CCE28945.1  56 TQEIRRLDNVERQLRYFHSQMDKTGITLRKLDLDTDRLASPSTSEIDELAERSQKLEQRVSALNDSYE 123
                 55667789999999999999999999999999999999999999999999999999999886655554 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.003
   Golgin_A5  45 lsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqelee 100
                 + a++ ++ +++dl r++++++n++++++++ l+++++  +ae +++ + l+    
  CCE28945.1 261 MGADVYNVDENSDLRRDQIHEVNNRLQDVQNVLRNTQTTLEAELKQISQSLSAWMV 316
                 45566678889999999999999999999999999999999999999998876655 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.1      0.01       7.2      34      85 ..      74     128 ..      48     133 .. 0.67
   2 ?    4.4   0.7     0.072        50      18      51 ..     282     312 ..     272     326 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.01
  Snapin_Pallidin  34 eqldrlnekLkeleeaqe...aevlpdlkeyakKLvnikkrmsslnerlqklkkR 85 
                      +q+d+    L++l  +++   + + ++++e a++ +++++r+s+ln++ ++lkkR
       CCE28945.1  74 SQMDKTGITLRKLDLDTDrlaSPSTSEIDELAERSQKLEQRVSALNDSYETLKKR 128
                      4555555555554444443122356789999999999999999999999999999 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.072
  Snapin_Pallidin  18 ldeklkelrqsQeeLleqldrlnekLkeleeaqe 51 
                      ++   + l++ Q+ L+++ ++l ++Lk++++  +
       CCE28945.1 282 VN---NRLQDVQNVLRNTQTTLEAELKQISQSLS 312
                      33...44566688888888888888888877655 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.4     0.016        11       7      26 ..     109     128 ..      98     142 .. 0.53
   2 ?    5.0   0.8     0.049        34      27      59 ..     283     315 ..     273     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.016
        ZapB   7 eqLEskiqkaidtitlLqme 26 
                 ++LE++++++ d +++L+++
  CCE28945.1 109 QKLEQRVSALNDSYETLKKR 128
                 24455555555555555444 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.049
        ZapB  27 ieeLkeeneelkeenreleeeneqlkeereawq 59 
                 + +L+  ++ l + +  le+e++q  +  +aw+
  CCE28945.1 283 NNRLQDVQNVLRNTQTTLEAELKQISQSLSAWM 315
                 678999999999999999999999999999996 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.5   2.4e+03      77      94 ..      61      78 ..      42      88 .. 0.52
   2 ?    5.8   0.2     0.019        13      64      91 ..     101     128 ..      94     141 .. 0.84
   3 ?    4.1   0.2     0.065        45      57      84 ..     283     310 ..     267     316 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHHHHHHHH CS
  Prefoldin_2 77 eiktlekqleklekelee 94
                 +++++e+ql++   ++++
   CCE28945.1 61 RLDNVERQLRYFHSQMDK 78
                 333444555555555554 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.019
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  64 keeLeerketlekeiktlekqlekleke 91 
                  ++eL er  +le+++++l++++e+l+k+
   CCE28945.1 101 IDELAERSQKLEQRVSALNDSYETLKKR 128
                  6899999999999999999999999886 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.065
                  EE-HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  57 kqdkeevkeeLeerketlekeiktlekq 84 
                   + +++v++ L +++ tle+e+k+++++
   CCE28945.1 283 NNRLQDVQNVLRNTQTTLEAELKQISQS 310
                  3445555555666666666666655554 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   2.4      0.01         7      24      99 ..      58     127 ..      42     134 .. 0.50
   2 ?    3.6   0.2     0.094        65      47     103 ..     252     309 ..     234     319 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.01
       DHR10  24 kidalqvvekdlrsciklleeieaelakleeakkklkelrdalee.keielrelerkeerlqrqlenaeeklerlre 99 
                  i  l++ve       ++l   ++++ k+  + +kl+   d+l++  + e  el  + + l+++++  ++ +e l++
  CCE28945.1  58 EIRRLDNVE-------RQLRYFHSQMDKTGITLRKLDLDTDRLASpSTSEIDELAERSQKLEQRVSALNDSYETLKK 127
                 333333333.......3334444444444444444444444444313345555666666666666666666555555 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.094
       DHR10  47 aelakleeak.kklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaee 103
                 a+++k  e++ +++ +  ++ + ++ + +e++++ + +q  l n +  le   +q ++
  CCE28945.1 252 AKIRKISESMgADVYNVDENSDLRRDQIHEVNNRLQDVQNVLRNTQTTLEAELKQISQ 309
                 4444544443244555555556666677788888888888888888888777777666 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.0    0.0025       1.7      47      95 ..      81     129 ..      42     132 .. 0.88
   2 ?    1.9   0.4      0.44     3e+02      71      96 ..     276     301 ..     248     314 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0025
     DUF4140  47 atildvqvervpnreaeeeelkalraeleeledelaaledelaaaearl 95 
                 +t+  ++++++   ++ ++e+++l ++ ++le++ +al+d+ +++++r 
  CCE28945.1  81 ITLRKLDLDTDRLASPSTSEIDELAERSQKLEQRVSALNDSYETLKKRE 129
                 55666666667777777778*************************9986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.44
     DUF4140  71 raeleeledelaaledelaaaearla 96 
                 r++++e++ +l+++++ l++ +++l+
  CCE28945.1 276 RDQIHEVNNRLQDVQNVLRNTQTTLE 301
                 44555555555555544444444433 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.4    0.0019       1.3      21      72 ..      83     134 ..      69     161 .. 0.81
   2 ?    2.0   0.8      0.16   1.1e+02      26      62 ..     277     313 ..     250     329 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0019
     DUF3450  21 alkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqler 72 
                 ++k    + + a+ s ++id+l++ +q+l++++ al++  e l++ +  l++
  CCE28945.1  83 LRKLDLDTDRLASPSTSEIDELAERSQKLEQRVSALNDSYETLKKREGDLTE 134
                 56666778889999*****************************998877765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.16
     DUF3450  26 ekavaaaaqsqkkidklddekqellaeyralkeeles 62 
                  ++++   + q  ++ l + +++l+ae++++++ l++
  CCE28945.1 277 DQIHEVNNRLQDVQNVLRNTQTTLEAELKQISQSLSA 313
                 3555555666666666666666666666666665554 PP

>> UPF0449  Uncharacterised protein family UPF0449
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.0      0.16   1.1e+02      62      96 ..      99     133 ..      44     135 .. 0.81
   2 ?    7.6   0.4    0.0074       5.1      28      98 ..     237     310 ..     229     313 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.16
     UPF0449  62 eqvrtylelnerLeeakeeLkqkceeLktageeLe 96 
                  ++ ++ e +++Le+  + L++ +e+Lk+   +L+
  CCE28945.1  99 SEIDELAERSQKLEQRVSALNDSYETLKKREGDLT 133
                 566788899999**************999888876 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0074
     UPF0449  28 dDvvftilsdsve...edkkassseeedleaeveelYeqvrtylelnerLeeakeeLkqkceeLktageeLeee 98 
                 ++ vf+i ++  e   +  k s+s   d  +  e+   +  +  e+n+rL+  ++ L++   +L++  ++++++
  CCE28945.1 237 NKNVFVIFAHGKEilaKIRKISESMGADVYNVDENSDLRRDQIHEVNNRLQDVQNVLRNTQTTLEAELKQISQS 310
                 56677777776664444444444444555555677777778999*********************999999887 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.7   1.2e+03       9      42 ..      31      64 ..      29      76 .. 0.71
   2 ?    9.8   0.4   0.00097      0.67      30      60 ..      98     128 ..      90     128 .. 0.92
   3 ?    0.9   2.5      0.56   3.8e+02      18      52 ..     275     309 ..     270     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.7
                XXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  9 lifgkkgllaykqlkqeiaalqaelaklkaenee 42
                + +g+ gl+++++l++++ a q++  +   + ++
  CCE28945.1 31 TALGELGLCQFRDLNEDVSAFQRTFTQEIRRLDN 64
                6678889999999999999888776655555444 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00097
                 HHHHHHHHHHHHHHHHHHCC-XXXXXXXXXX CS
       DivIC  30 qaelaklkaeneeLeaevkdLksdedyieer 60 
                 + e+++l ++ ++Le++v+ L+++++ +++r
  CCE28945.1  98 TSEIDELAERSQKLEQRVSALNDSYETLKKR 128
                 679******************9999999886 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.56
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLks 52 
                 ++ q+++  ++lq+  + l++++  Leae+k+ ++
  CCE28945.1 275 RRDQIHEVNNRLQDVQNVLRNTQTTLEAELKQISQ 309
                 5667888889999999**************99865 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4      0.25   1.7e+02      46      81 ..      75     120 ..      29     133 .. 0.45
   2 ?    7.7   1.0    0.0051       3.5      21      84 ..     250     312 ..     245     321 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.25
  Baculo_PEP_C  46 qLnalsedlksllaeldt.................rldtlltnLtdalnalqd 81 
                   q+++    l+       +                 +l++ +++L++ + al+d
    CCE28945.1  75 QMDKTGITLR-------KldldtdrlaspstseidELAERSQKLEQRVSALND 120
                   2222222222.......122222324444444444555555566666666654 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0051
  Baculo_PEP_C  21 vLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlr 84 
                   +L+ ir  + ++ a++ +  ++ + + +++  ++++ l+++++ l ++ t+L++ l++++++l+
    CCE28945.1 250 ILAKIRKISESMGADVYNVDENSDLRRDQIH-EVNNRLQDVQNVLRNTQTTLEAELKQISQSLS 312
                   6677777777777777666666666555544.47777777777777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (862 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1164  (0.0649228); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.84u 0.26s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 5769.75
//
Query:       CCE28946.1  [L=891]
Description: related to BRR5-component of pre-mRNA polyadenylation factor PF I [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-88  294.7   0.6    5.3e-88  294.2   0.6    1.2  1  CPSF73-100_C   Pre-mRNA 3'-end-processing endonuclease polyad
    8.3e-31  106.5   0.0    2.3e-30  105.1   0.0    1.8  1  Beta-Casp      Beta-Casp domain
      3e-18   66.6   0.7      3e-18   66.6   0.7    1.7  2  Lactamase_B    Metallo-beta-lactamase superfamily
    4.8e-18   65.3   0.1    8.3e-18   64.5   0.1    1.4  1  Lactamase_B_6  Metallo-beta-lactamase superfamily domain
    1.5e-11   44.0   0.0    3.3e-11   43.0   0.0    1.6  1  RMMBL          Zn-dependent metallo-hydrolase RNA specificity
    3.1e-06   26.8   0.5    7.4e-06   25.6   0.5    1.6  1  Lactamase_B_2  Beta-lactamase superfamily domain
      4e-05   23.6   0.1      4e-05   23.6   0.1    2.1  1  Lactamase_B_3  Beta-lactamase superfamily domain
     0.0063   16.1   1.5      0.021   14.4   0.7    2.0  2  Isy1           Isy1-like splicing family
  ------ inclusion threshold ------
      0.062   11.9   4.4      0.091   11.4   4.4    1.1  1  THOC2_N        THO complex subunit 2 N-terminus
       0.51    9.5  10.0       0.29   10.3   3.9    2.2  2  Zip            ZIP Zinc transporter
       0.53    9.0   4.5       0.97    8.1   4.5    1.3  1  Tim54          Inner membrane protein import complex subunit 


Domain annotation for each model (and alignments):
>> CPSF73-100_C  Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.2   0.6   3.2e-91   5.3e-88       2     217 .]     534     888 ..     533     888 .. 0.95

  Alignments for each domain:
  == domain 1  score: 294.2 bits;  conditional E-value: 3.2e-91
  CPSF73-100_C   2 lvsGvLVqkdfklsllapeDLreytgLstttitqkqrlpls.asiellkwaleqlfgdveeleekekkk............................ 69 
                   lv+GvLVq+dfklsl+apeDLrey+gL+tttit+kqrl+ls a+i+l+kwale++fg+veel+e+++++                            
    CCE28946.1 534 LVTGVLVQNDFKLSLMAPEDLREYAGLNTTTITCKQRLTLSaAGIDLIKWALEGTFGTVEELPEMRRQQpnnnndevskndtseqveeekdqgtasv 630
                   79**************************************99******************99999999899999999******************** PP

  CPSF73-100_C  70 .................................................tllvmgcvtvrveskgeveleWesnllnDmiADsviavllsvesspas 117
                                                                    ++lvmgcvtvr++++ eveleWe+n+lnD+iADsv+avl+svesspa+
    CCE28946.1 631 lddddeyipdaaeeeaqkekqtqvpkqeqnqnqkhqpeaadeevaalvaAYLVMGCVTVRYRTNCEVELEWEANMLNDGIADSVMAVLFSVESSPAA 727
                   ************************************************************************************************* PP

  CPSF73-100_C 118 vkrssk.....khshshkekleeknshaklskeerlerllllLeaqFGedk..vielpke..................................... 170
                   vkrss      +h+h+h+++++ +n+ha+ s+++rl+rl+++LeaqFG+d+  ++e+p+                                      
    CCE28946.1 728 VKRSSAhshshSHHHHHHDQPTGTNPHAHPSPSDRLDRLFWFLEAQFGADNvaPVEIPRLaelepetrpkqvdatpsedamevdtdtegtdptkedi 824
                   **999886644444444899999****************************655555444777899******************************* PP

  CPSF73-100_C 171 .................pvpgvevkvdkkeakidletleVecesevlkdrveavveravetvap 217
                                    pvpgv++kvdk++a+++le+leV+c+++v++drv+avver+ve++ap
    CCE28946.1 825 lrerqvkelerlhkigiPVPGVSIKVDKMHATVWLEDLEVDCNNKVFADRVRAVVERGVEVTAP 888
                   **************************************************************98 PP

>> Beta-Casp  Beta-Casp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.0   1.4e-33   2.3e-30       1     109 [.     263     397 ..     263     398 .. 0.85

  Alignments for each domain:
  == domain 1  score: 105.1 bits;  conditional E-value: 1.4e-33
                 HHHHHHHH..HCTT..TTS-S-EEEEE-HHHHHHHHHGGGGGGE-SHH....HHH.H....HH................................HS-S CS
   Beta-Casp   1 aqellylLeelwkekkledlklpiyldsplaskatevYkeyaeveakslewmesk.ke..eln................................sskg 64 
                 aqell++L+e+w ++++  +k+piy++s+la+k++ vY++y       + +m+++ k+  + +                                ++ g
  CCE28946.1 263 AQELLLILDEYWGKHPE-YQKYPIYYASNLARKCMVVYQTY-------VGAMNDNiKRlfR-ErmaeaeasgnsagkggpwdfkyirslknldrfDDVG 352
                 7*************984.4559*******************.......5555555532221.1345566778899999999999999999999997789 PP

                 SEEEEES-TTSSSSHHHHHHHHHTTSTTSEEEESS---TTSHHHH CS
   Beta-Casp  65 pkvilassgmlegGrsrellkklledprntvilvgyqaegTlgrk 109
                  +v+las+gml++G+srel+++++++++n vi++gy++egT++r+
  CCE28946.1 353 GCVMLASPGMLQSGVSRELFERWAPNEKNGVIITGYSVEGTMARQ 397
                 9******************************************98 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.7   1.8e-21     3e-18       4     162 ..      36     207 ..      33     277 .. 0.93
   2 ?   -3.7   0.2         6   9.7e+03      74      78 ..     742     746 ..     734     809 .. 0.63

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 1.8e-21
                  CSSEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHH.... CS
  Lactamase_B   4 dpvnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkgll.... 97 
                  ++ ++ +++ +g++++ D+G +++++ +a ++++ ++++  vd ++++H+H+DH++ l+++  +t++  ++   +  + ++ ++ ++++r ++     
   CCE28946.1  36 VGRSCHIVQYKGKTVMLDAGNHPAYDGLAALPFYDDFDLSTVDVLLISHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVSNTsssl 133
                  6789********************************************************************************************** PP

                  .........TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC CS
  Lactamase_B  98 .........lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridl 162
                           +   +++  ++ +  ++ +  ++r ++ + g++ g+  + +e+ g ++ ftGD + + ++ +++ 
   CCE28946.1 134 atppvyteqDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSA 207
                  *********99999***************************************************999998887 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6
                  CCEHH CS
  Lactamase_B  74 avaee 78 
                  +++++
   CCE28946.1 742 HHHHD 746
                  23333 PP

>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.1   5.1e-21   8.3e-18       2     188 ..      43     220 ..      42     224 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 5.1e-21
  Lactamase_B_6   2 LeldnvkiLlDvGwdeskvslesalkelekv.iptvdliLLshatlehlGayallyakfksklllnipvyatlpvvkLGrvslldlyaskgllgpe 96 
                    +++ + +++lD G +   ++   al ++++  ++tvd+ L+sh  ++h +++++++ak       + +v+ t+p++++ + +++d+++ ++++ + 
     CCE28946.1  43 VQYKGKTVMLDAGNHPA-YDGLAALPFYDDFdLSTVDVLLISHFHVDHAASLPYVLAKT----NFRGRVFMTHPTKAIYKWLIQDSVRVSNTSSSL 133
                    67778899*****9997.555678888988669*******************9999875....3589*********************99999999 PP

  Lactamase_B_6  97 dseel.eledideafdkiktlkYsQklelkskldgltitaynaGhtlGGtiWkiskesekivYavdwnhakeshLngaalldssgkvleqllr 188
                     +  + + +d  + f +i+++ Y+ +++++s    + it+y aGh+lG++++ i+    +i +  d++ ++++hL +a++ +  g  ++ l++
     CCE28946.1 134 ATPPVyTEQDHLNTFPQIEAIDYHTTHTISS----IRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPK--GVKIDVLIT 220
                    987652779*****************99986....****************************************9998854..666666665 PP

>> RMMBL  Zn-dependent metallo-hydrolase RNA specificity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0     2e-14   3.3e-11       2      60 ..     429     492 ..     428     494 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 2e-14
       RMMBL   2 ipvkarieeidfSgHadknellelirklkprnvilvHGeeeatsalarll.....keeegidvf 60 
                 ip++++++e++f +H d  e +e+i+ +  + vilvHGe+  + +l+++l     ++ ++++v+
  CCE28946.1 429 IPRRCSVAEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLlslnaSKTNKVKVY 492
                 89***********************************************944442233346655 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.5   4.6e-09   7.4e-06      25     147 ..      71     200 ..      48     232 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4.6e-09
                    S--..SEEEEE-SS--HHHHGGGGCCCC...C--EEEEEEEEHHHHH.................HCCTTCGHHHCHTT.TTEEEEEE-TTSEEEEC CS
  Lactamase_B_2  25 rdelppidaVllthaHyDHlaglltlre...lrpkklplyapkgvla.................vleanfvylaleee.pavnvheldwgesfelg 99 
                      +l+ +d++l++h H+DH a l+ + +   +r    +++ +  + a                  l++  vy  +++   + +++ +d ++++++ 
     CCE28946.1  71 DFDLSTVDVLLISHFHVDHAASLPYVLAktnFR---GRVFMTHPTKAiykwliqdsvrvsntssSLATPPVYTEQDHLnTFPQIEAIDYHTTHTIS 163
                    446889*******************99965533...34565555555455666666555555556666666666666699999************8 PP

                    STTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS-S--- CS
  Lactamase_B_2 100 dggleitatparhksgrrldrnagdtlGlriegggkrvyyigDtgyip 147
                       ++it+ pa h  g          + ++ie +g +++++gD  + +
     CCE28946.1 164 --SIRITPYPAGHVLGA---------AMFLIEIAGLNIFFTGDYSREQ 200
                    ..577888888888887.........99***************87555 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   2.4e-08     4e-05       6     134 ..      37     220 ..      35     228 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.4e-08
  Lactamase_B_3   6 ghnsflletagarilvDPfka..nlgyeppa.........eeaDlvlisqaledHahletlkql................................ 58 
                    g ++  ++ +g+++++D ++   + g++  a          ++D++lis+ + dHa+  +   +                                
     CCE28946.1  37 GRSCHIVQYKGKTVMLDAGNHpaYDGLA--AlpfyddfdlSTVDVLLISHFHVDHAASLPYVLAktnfrgrvfmthptkaiykwliqdsvrvsnts 130
                    889**************99643333433..1448888899***************98766555477999999999999999999987777777777 PP

  Lactamase_B_3  59 ........aenvkvleegesle.vggleiravatsh.......davg.gsergenngflleqdgltiyhlGhlahels....seelkelgrvDvvl 133
                            +      +e+++l+ + ++e    +t h       ++ + g++ g   +fl+e +gl+i++ G+ + e +    s+e  +  ++Dv++
     CCE28946.1 131 sslatppvY------TEQDHLNtFPQIEAIDYHTTHtissiriTPYPaGHVLG-AAMFLIEIAGLNIFFTGDYSREQDrhlvSAEVPKGVKIDVLI 219
                    764333331......22222221233333333333333343332222134444.79****************998644111133334445777777 PP

  Lactamase_B_3 134 t 134
                    t
     CCE28946.1 220 T 220
                    6 PP

>> Isy1  Isy1-like splicing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.47   7.6e+02      75      87 ..     305     317 ..     300     320 .. 0.86
   2 !   14.4   0.7   1.3e-05     0.021     126     199 ..     589     672 ..     572     763 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.47
        Isy1  75 dlNDeiNkLlrek 87 
                  +ND+i +L+re+
  CCE28946.1 305 AMNDNIKRLFRER 317
                 79**********8 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.3e-05
        Isy1 126 FGrAkeLPgVkelfekekkkeekkkkeraelfknidadYYGyrdeedgvlleleaeaekeareeavwkeekee..........e 199
                 FG   eLP+ ++   +++++e +k+++++++ ++ d     + d++d+ + +  +e+ +++++++v k+e+++          e
  CCE28946.1 589 FGTVEELPEMRRQQPNNNNDEVSKNDTSEQVEEEKDQGTASVLDDDDEYIPDAAEEEAQKEKQTQVPKQEQNQnqkhqpeaadE 672
                 9**************999998899999999999999999999999999777665555555555555222222211222222220 PP

>> THOC2_N  THO complex subunit 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.4   5.6e-05     0.091     315     391 ..     604     688 ..     591     692 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.6e-05
     THOC2_N 315 keleekssek......gsanaLamagaLsdddDtep..kkekeakkkekakkkeeeekeeepepeklkdqkiqLlkaLLaiGalp 391
                 ++ ++++s++       ++    +a++L ddd+  p  ++e+++k+k+++  k+e++++++ +pe  ++   +L+ a L++G+++
  CCE28946.1 604 NNNNDEVSKNdtseqvEEEKDQGTASVLDDDDEYIPdaAEEEAQKEKQTQVPKQEQNQNQKHQPEAADEEVAALVAAYLVMGCVT 688
                 44444444444444443444455799***7776666753344444444444555666666666766666999**********985 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.9   0.00018      0.29     108     192 ..     600     685 ..     588     688 .. 0.78
   2 ?    2.6   0.4     0.038        62     143     169 ..     730     756 ..     702     835 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
         Zip 108 ektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkeklaslkvr...aiilllg 192
                 +++p++ +++ s+++++++v+++k +++    d++ e+  da ++e +++++++ +++e++q++  ++++++a  +v+   a  l++g
  CCE28946.1 600 RQQPNNNNDEVSKNDTSEQVEEEKDQGTASVLDDDDEYIPDAAEEEAQKEKQTQVPKQEQNQNQ--KHQPEAADEEVAalvAAYLVMG 685
                 56799*************************************9999999999999999998855..4444444444441125555555 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.038
         Zip 143 aeadtdadskeelrngkqeksesekeq 169
                 ++ ++++++++++++  q++  + +++
  CCE28946.1 730 RSSAHSHSHSHHHHHHDQPTGTNPHAH 756
                 333333333332222222222222222 PP

>> Tim54  Inner membrane protein import complex subunit Tim54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.5   0.00059      0.97     184     263 ..     586     669 ..     580     694 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00059
       Tim54 184 EGlLGPldkpeepeeeeaeeeeeeeeeekeeeeeeeeeeeeekeeekeeek...eeeeeeeekekkkkvpkp.yispedYasae 263
                 EG  G +++ +e + ++ +++++e ++++++e+ eee+++ +++  +++++   ++ eee +kek+++vpk+  +++++++ + 
  CCE28946.1 586 EGTFGTVEELPEMRRQQPNNNNDEVSKNDTSEQVEEEKDQGTASVLDDDDEyipDAAEEEAQKEKQTQVPKQeQNQNQKHQPEA 669
                 99*****99977777777777777666666665555333333333333333232333333333333444443333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1257  (0.0701099); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.90u 0.25s 00:00:01.14 Elapsed: 00:00:00.44
# Mc/sec: 6135.46
//
Query:       CCE28947.1  [L=1022]
Description: related to tpa inducible protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-37  127.9   0.0    1.3e-36  126.3   0.0    1.8  2  CN_hydrolase  Carbon-nitrogen hydrolase
    6.5e-28   98.3   9.7    2.8e-23   83.1   4.9    2.4  2  TAF4          Transcription initiation factor TFIID component


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   0.0   1.5e-40   1.3e-36      27     236 ..     733     956 ..     688     971 .. 0.87
   2 ?   -2.5   0.0      0.28   2.5e+03     236     261 .]     980    1004 ..     975    1004 .. 0.84

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 1.5e-40
                   H........HHHTTESEEEEETTTTTBSSSHHHHHHHHB.HSSSHHHHHHHHHHHHHTEEEEEEEEEEEC.CTTEEEEEEEEEEEETTSEE..EEEE CS
  CN_hydrolase  27 e........AarkgadLivlPElfitgykeeahfleaAe.aglgetlallaalarkngiavviglierel.tngklqayntavlldldgkl..vgky 111
                   e        Aa  ga++++lPE+++++    a+ l +A+ +  ++++++l+++a+++ +a+ +g+ +    t+++ ++ n+a+++ +dg++   ++y
    CCE28947.1 733 EslaigfakAAVGGAKILFLPEASDYIAPTAAESLRLAQpQSTSPFVKGLREAAKNYSVAIHVGVHQPLPtTQPTPKLANRALYITPDGEIqdSASY 829
                   2555555336666***************9999******9*999*********************99885599999999******************* PP

                   E-SS--EECTTSCECCGHHTSCS-SS.S-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT-SEEEE......BH.GCCCTCHHHHHHHHHHHHHHHHH CS
  CN_hydrolase 112 rKlhLfpgeprpptaverelfepgdg.ipvfdtpvgkiGaaiCyeigfpellralalkgaeilvn......lserapvpksmgppqwellgrarale 201
                   +Klh f    + ++ +e++++epg    ++fd+p+g+iG +iC + +f e ++ la+ g     +      l+  + +++++g+++we+l rara+e
    CCE28947.1 830 DKLHVF----DYGSLRESSTVEPGSTlTAPFDSPIGRIGSLICFDLRFAEPAILLAQPGKHSRWYgraaqiLTYPSAFTVRTGQAHWETLLRARAIE 922
                   ****77....5899******************************************99855444445555533357899****************** PP

                   HTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EE CS
  CN_hydrolase 202 ngcfviaanqvggyeqlilwpvghSaiidpdGril 236
                   ++ +v+a++qvg  ++++++++g S ++dp+G++ 
    CCE28947.1 923 TQSWVVASAQVGR-HNDKRVSYGRSLVVDPWGEVR 956
                   *************.******************985 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.28
                    EEECCSSSTEEEEEEEEHHHHHHHHH CS
  CN_hydrolase  236 laglgeeeegvliaeidladvratrr 261 
                    +ag+g+ ee +  +++dl++v+++rr
    CCE28947.1  980 AAGNGTMEE-IGFVDLDLEQVERVRR 1004
                    577788886.***********99986 PP

>> TAF4  Transcription initiation factor TFIID component TAF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   3.7e-07    0.0033       2      71 ..     195     314 ..     194     322 .. 0.88
   2 !   83.1   4.9   3.1e-27   2.8e-23      71     272 ..     364     652 ..     358     657 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.7e-07
        TAF4   2 nDvlasaGVdLkeEeerLlqss.................................................akeasrvseavravvrsekee..pfLqk 49 
                 +D la +G+dL++Ee+++++ +                                                 a+e++  + + r +v++++e   pfL  
  CCE28947.1 195 TDSLAGTGIDLRAEEQYMSELYsnamdasseartgfaqhaagskasfygaglanqpaesspeqdqkkfalkAAEKAWSEASMRLAVQRTQEIndPFLMV 293
                 589999************965599**********************************************877777777777777887777679***** PP

        TAF4  50 npLqkklaeiakkeglksidpD 71 
                 + L+++ ++iak++ ++  + D
  CCE28947.1 294 AILHRRAEKIAKEHHIS-LNLD 314
                 ***************95.3433 PP

  == domain 2  score: 83.1 bits;  conditional E-value: 3.1e-27
        TAF4  71 DvlellSlAveerLrgLltklivlskhRrrgekskkrte............................................................ 109
                 D l+l+S+A+++rLr+++ ++ v++  R ++ + +  ++                                                            
  CCE28947.1 364 DQLALMSIATKQRLREMVGDADVVAANRQKTSHGE--VPedwaaaaaplnteplgeaadvdplkdvadgvpvtsetaplkrfaedatlgnimrpakkma 460
                 6789**************************55444..3478********************************************************** PP

        TAF4 110 sltsdvrkqLrelaqkekeeeekrqakRi...........eereglekaakdrskgedeeekklkaketakevqkeedekarhraANatAlaavg.... 193
                 +++s +  ++rela++e+e ee+r ++R            + +     a++ ++++++e ek +++ke +k++  +  e+ +h + N t ++ +g    
  CCE28947.1 461 KISSSMMLTMRELARQEREWEEARLRRRQkrkdgaadigtAPSRSGSVAPGTPGSVAPESEKPMTKKEMRKQQTAKAAEANSHANQNITSSMFTGfggk 559
                 **************************888999***9999944556666677899******************99************************* PP

        TAF4 194 ......eprk.Kkyswmsagsgsgggksgaskssssggkgl.................kgksgviserGkngl..rlrerergkritlrDllaaLEqer 266
                       ++   K+y w +ag g++++++ a++++ sg kg                             +n l    ++ e+gk+i+lrD++ +LE+++
  CCE28947.1 560 gnlfgkKK-TgKTYDWLNAGRGGSSASTPAKSTPGSGMKGFhgasgtpsaanlamtteG----------RNRLgtWREDKEKGKNIQLRDWVVVLERDG 647
                 ****7444.36*********986666666555555555554566666544333333331..........3333225556699***************** PP

        TAF4 267 rtsksa 272
                 r+  +a
  CCE28947.1 648 REI-KA 652
                 *98.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.24s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 7206.28
//
Query:       CCE28948.1  [L=200]
Description: related to subunit of the Arp2/3 complex ARC15 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-52  176.3   0.0      6e-52  176.1   0.0    1.1  1  P16-Arc   ARP2/3 complex 16 kDa subunit (p16-Arc)


Domain annotation for each model (and alignments):
>> P16-Arc  ARP2/3 complex 16 kDa subunit (p16-Arc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.1   0.0   3.3e-56     6e-52       1     148 []      15     200 .]      15     200 .] 0.94

  Alignments for each domain:
  == domain 1  score: 176.1 bits;  conditional E-value: 3.3e-56
                 XXXXXXXXXXXXXX...XXXXXXXXXXXXX---GGGGTHHHHHHHHHHS--HHHHHHHTSS---S-S-HHHHHHHHHHHHHHHHTS-GGGHHHHHH... CS
     P16-Arc   1 afRkidvDaldedk...fkeeelapespeeseaevqqkesevrsllrsgdaeeALkaalknppygakeqaakeralqlvlevLssikasdiekavk... 93 
                 ++R+i++Da++ed+   f+ ++l+p++pe seaev+q +++vr+ll++gdae+AL+ +l++p+y ++ + ak+++lq+++evL+sikas++++++k   
  CCE28948.1  15 SWRTINIDAYNEDSsvnFDISTLHPPQPEISEAEVRQLAGQVRQLLQGGDAEGALRGCLETPVYVGT-EGAKDAHLQTIIEVLQSIKASEMSPLLKkly 112
                 5************6689*************************************************9.7***************************998 PP

                 .HS-.HHHHHHHHHHHHHHTT-------...............................SHHHHHHHHHHHTT-SHHHHHHTT--X.. CS
     P16-Arc  94 .sld.keeldvLmkYiYkgmespsekss...............................avLLsWhekvvevaGvgsIvrvltdrrtV 148
                  s++ +e+ldvLmkYiYkgm++ +++ +                               +vLLsWhekvv+vaG+g+I r++td+r+V
  CCE28948.1 113 eSEGgNECLDVLMKYIYKGMSMGQSSGGrgskvmpqptggfsqvgsrpgasnesaaasmSVLLSWHEKVVDVAGLGCIGRTMTDWRRV 200
                 8555699*************877644446788******************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1553.19
//
Query:       CCE28949.1  [L=413]
Description: uncharacterized protein CPUR_02639 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-11   42.2   0.0    2.1e-10   41.1   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    9.3e-09   35.9   0.0    1.6e-08   35.2   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    2.4e-08   34.6   0.0    7.7e-08   32.9   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    1.8e-07   31.2   0.0    2.9e-07   30.5   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    7.6e-05   22.5   0.0    0.00019   21.3   0.0    1.7  1  Methyltransf_31  Methyltransferase domain
     0.0013   18.2   0.0     0.0021   17.5   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.083   13.1   0.1       0.16   12.3   0.1    1.4  1  Pox_EPC_I2-L1    Poxvirus entry protein complex L1 and I2


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   8.1e-14   2.1e-10      13      91 ..     179     258 ..     174     262 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 8.1e-14
                      HHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11  13 alakrgarvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      +l  r +++v+ + s+ ml + +++  +++l  v+ v +d e+lpfe +sfDlv+ss +lh+++d+  +l++i  vLkp+
       CCE28949.1 179 PLSTRISELVAAESSESMLYRDSDHDFNQKLnIVRQVLQDEESLPFEPESFDLVMSSLSLHWINDLPGILSQINSVLKPD 258
                      5566668999999******999888888888766779999999************************************8 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   6.1e-12   1.6e-08       1      97 [.     150     259 ..     150     261 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 6.1e-12
  Methyltransf_12   1 LeiGcGtGsllrallekl...............pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..ssfDlvvasnvlh 77 
                      L++G+ + +l+ral +++               + +e+++ + s+s++  +   + +++++n  +  l++++   + +   +sfDlv +s  lh
       CCE28949.1 150 LDLGAHSCNLARALVRDNpdpdpavpisaplstRISELVAAESSESML-YRDSDHDFNQKLNIVRQVLQDEE---SLPFepESFDLVMSSLSLH 239
                      89******************************999*************.33333333333333333333333...3333569************ PP

  Methyltransf_12  78 hlkdirevldnirklLkpgG 97 
                      +++d+  +l++i ++Lkp+ 
       CCE28949.1 240 WINDLPGILSQINSVLKPDC 259
                      ******************86 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0     3e-11   7.7e-08      13      96 ..     178     258 ..     149     258 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 3e-11
                      HHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEE CS
  Methyltransf_25  13 lalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpg 96 
                      + l++r   +++++ + se+ml +   +  +++l  v+ v +d e+lpfe +sfDlv+ss +lh+++  dl+ +l++i +vLkp+
       CCE28949.1 178 APLSTR--ISELVAAESSESMLYRDSDHDFNQKLnIVRQVLQDEESLPFEPESFDLVMSSLSLHWIN--DLPGILSQINSVLKPD 258
                      334444..4999**********8888877778885677788999***************98899988..9*************96 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.1e-10   2.9e-07      11     164 ..     134     315 ..     113     316 .. 0.71

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.1e-10
  Methyltransf_23  11 dklerllpklraggrvLdiGcGtGillevl.re................ngfsvtgvDlspeaveiae......kakkaqkdqfdeqeaaepqg 81 
                      ++ erll  +r   rvLd+G+ + +l++ l r+                +  ++++ + s+ +  + +      k    +++  de++ +++ +
       CCE28949.1 134 RLSERLLYIKRHFPRVLDLGAHSCNLARALvRDnpdpdpavpisaplstRISELVAAESSESMLYRDSdhdfnqKLNIVRQVLQDEESLPFEPE 227
                      55567776689999************88885553333333333333322224666666666655555577776666666666666777888888 PP

  Methyltransf_23  82 kfdlIvlrevlehvpdppellrqiatllkpgGylllseplasl..kedrllldwlylvpag..rhi.sffsarslkelleeaGlevve 164
                      +fdl+ ++ +l+++ d+p  l+qi++ lkp+  ++  + + +   + + +l+  + ++  g   h+  + + r+++ ll+++G+++++
       CCE28949.1 228 SFDLVMSSLSLHWINDLPGILSQINSVLKPDCPFIGAMLGGDTlfELRTSLQLAEQERRGGisPHVsPLADVRDVGGLLQKSGFKMLT 315
                      *******************************99999998776654455555555555544477566699999***********99875 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   7.3e-08   0.00019      37     106 ..     193     260 ..     147     287 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 7.3e-08
  Methyltransf_31  37 seeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeiervlkpggi 106
                      se ++ +   +  +++l+ v+   +d e+l+  +e+e+fDl++s   l+ ++d++ il +i +vlkp+  
       CCE28949.1 193 SESMLYRDSDHDFNQKLNIVRQVLQDEESLP--FEPESFDLVMSSLSLHWINDLPGILSQINSVLKPDCP 260
                      5555555555555666666777778888888..*********************************9865 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   8.1e-07    0.0021      74     146 ..     186     258 ..     142     275 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8.1e-07
                      EEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEE CS
  Ubie_methyltran  74 kvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpG 146
                      ++v ++ +e+mL    ++  ++    ++ +  + e Lpfe +sfD+v  s  l  + D +  L ++  vlkp 
       CCE28949.1 186 ELVAAESSESMLYRDSDHDFNQKLNIVRQVLQDEESLPFEPESFDLVMSSLSLHWINDLPGILSQINSVLKPD 258
                      78889999********999999999**********************************************96 PP

>> Pox_EPC_I2-L1  Poxvirus entry protein complex L1 and I2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   6.1e-05      0.16      16      36 ..     201     221 ..     196     234 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.1e-05
  Pox_EPC_I2-L1  16 eddDfnnFievVksVLtdeka 36 
                    +d Dfn+ +++V+ VL de++
     CCE28949.1 201 SDHDFNQKLNIVRQVLQDEES 221
                    799***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2809.00
//
Query:       CCE28950.1  [L=964]
Description: related to alpha-adaptin C [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.3e-123  411.7   7.7   5.1e-123  411.4   7.7    1.0  1  Adaptin_N        Adaptin N terminal region
    8.9e-46  154.7   0.0    3.1e-45  153.0   0.0    2.0  2  Alpha_adaptin_C  Alpha adaptin AP2, C-terminal domain
    3.7e-18   65.8   0.0    7.2e-18   64.9   0.0    1.5  1  Alpha_adaptinC2  Adaptin C-terminal domain
  ------ inclusion threshold ------
      0.018   15.2   0.1      0.075   13.2   0.1    2.0  1  RTP1_C1          Required for nuclear transport of RNA pol II
      0.034   14.5   0.0      0.094   13.1   0.0    1.8  1  AP4E_app_platf   Adaptin AP4 complex epsilon appendage platfo
       0.16   11.5   2.2       0.36   10.4   1.5    2.0  2  CLASP_N          CLASP N terminal


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  411.4   7.7  1.7e-126  5.1e-123       1     522 [.      38     590 ..      38     592 .. 0.95

  Alignments for each domain:
  == domain 1  score: 411.4 bits;  conditional E-value: 1.7e-126
                 XHHHCCHHHHHHCCSSS....-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHH CS
   Adaptin_N   1 eekriqqelaeilnsnk....dddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqli 95 
                 eekri++ela+i++++k     +++kkk +v+kl+y+++lG dv+f++ e v+l++ +++++K+++Yl+++l+++e+++l+ Lv+ns++kDl d+n+l+
  CCE28950.1  38 EEKRINKELANIRQKFKdgslSGYHKKK-YVCKLLYIYILGWDVDFGHLEAVNLISANKYSEKQIGYLAMTLFLHEKHELLHLVVNSIRKDLLDNNELF 135
                 689**************99855555555.********************************************************************** PP

                 HHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSH..HHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCC..HHH CS
   Adaptin_N  96 rglALrvLssirvpelaedlapaikkllkdrsp..yvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleeikkndrlll..kll 190
                  +lAL+++++++ +e+ e+l  ++ +ll ++++  +v+kkAal++l+ly+k pd++++q++e+i++l++d d gv l++++l   +  +d l +   + 
  CCE28950.1 136 NCLALHAIANVGGREMGEALSLEVHRLLISPTSksFVKKKAALTLLRLYRKHPDIVSPQWAERIIHLMDDADLGVALSVTSLVMAL-AQDSLDSykGAY 233
                 *****************************999889***************************************************.666666666*** PP

                 HHHHCCHHHHH............HCS-HHHHHHHHHHHCC---SSHHHH....HHHHHHHCGGCG.........CSSCHHHHHHHHHCCHCCCCSTHHH CS
   Adaptin_N 191 pklvrrLcnll............teldpwlqvkiiklltrlarqepeersk..kellesllnllq.........ssnnaVlletvnlivelapkneliv 266
                  k + rL++++            +++ pwlq+k+i+ll+  +++e+       ++ l+++lnl           +++naVl+e++nli++l+ + +l++
  CCE28950.1 234 AKAAARLKRIVidgeytadylyyKVPCPWLQIKLIRLLQYFSPSEDTHVRDmiRQSLQKILNLAMeaqknvqqnNAQNAVLFEAINLIIHLDTEHALMK 332
                 ***************************************999988887744566666666666669********************************* PP

                 CCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXTTTT...TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHH CS
   Adaptin_N 267 lavnaLvrllsskdenlryvaLrtllkivkkepkavq...hldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvk 362
                 ++ ++L+r+++s+++n+ry+ L+++ +++ + ++ +    h+d+++ +lk d+d+s+r+k ldll+ ++d++N+k+iv eL++++ + ad  +++++v 
  CCE28950.1 333 QISSRLGRFIQSRETNVRYLGLEAMTHLAARTETLIPikqHQDIILGSLK-DRDISVRRKGLDLLYSMCDATNAKIIVGELLQFL-QNADFAIREEMVL 429
                 *******************************966653436**********.**********************************.666888******* PP

                 HHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG.XXSHHHHHHHHHHHHHTTTTXTT.....HHHHHHC CS
   Adaptin_N 363 aIgrlaekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheeiiekLaellek.ieseearaaaiWllGeygelvsn.te.sasdllrs 458
                 +I++l+ek+atd++w++d+ l+l+  +g++v+de+++++++++++++el+ +++++ ++++++  ++e++++  +++ Ge+g lv +  + s+ +++  
  CCE28950.1 430 KIAILTEKYATDVQWYVDISLRLIAMAGDHVSDEVWQRVIQIVTNNEELQVYTAQTALQYVKSdHCHETLVKIGAYITGEFGHLVADqPRcSPIEQFMA 528
                 *************************************************************999**********************977789999**** PP

                 TTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHHHHHHHHHXXSHHHHHHHHHHHHHHCC CS
   Adaptin_N 459 laekfvlesekvklqiltalvKlyltspdketqekliqlvlslatssdlevrdRaveylqllss 522
                 l+ k+  +s  ++++il+ ++K+ +++p  e++++l+  ++ +++++d e+++Ra+eyl+l ++
  CCE28950.1 529 LHGKLPGCSPSTRAMILSCFIKFVNLFP--EIKPQLLHTFEFYSHTLDSEMQQRACEYLTLANM 590
                 ****************************..7999*************************99875 PP

>> Alpha_adaptin_C  Alpha adaptin AP2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.7     8e+03      26      48 ..     290     313 ..     286     329 .. 0.60
   2 !  153.0   0.0     1e-48   3.1e-45       1     112 [.     835     946 ..     835     947 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.7
  Alpha_adaptin_C  26 aqkifklk.aaekeideetvrkvl 48 
                       qki++l+ +a+k+++++ +++ +
       CCE28950.1 290 LQKILNLAmEAQKNVQQNNAQNAV 313
                      577777665556666665555544 PP

  == domain 2  score: 153.0 bits;  conditional E-value: 1e-48
  Alpha_adaptin_C   1 FleptelssedFfkrWkqlggapreaqkifklkaaekeideetvrkvleGfrlavlenvdpnpenivgagvlhtsesgkvgcLlrlepNkqakm 94 
                      F++p+ ls+edFfkrWkq+g+ +reaq if+++  +kei+e++v++ +eGfr+++l+ vdpnp+n+vga+vlhtse+gk+gcLlrlepN+ ++m
       CCE28950.1 835 FMDPADLSAEDFFKRWKQIGAGSREAQAIFGVSGTRKEISESFVKNTVEGFRWRLLDMVDPNPKNVVGASVLHTSEGGKFGCLLRLEPNYSTQM 928
                      9********************************************************************************************* PP

  Alpha_adaptin_C  95 vrltiRatkeavpktllk 112
                      +rltiRat+e+vp++ lk
       CCE28950.1 929 IRLTIRATDESVPSVFLK 946
                      *************99877 PP

>> Alpha_adaptinC2  Adaptin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   2.4e-21   7.2e-18       3     111 .]     724     829 ..     722     829 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 2.4e-21
                      EEEEEETTEEEEEEEEETTSTTEEEEEEEEEE-SSS-EEEEEEEEEEBTTCEEE.....EEEES-S-B-TTCEEEEEEEEEEESCTTS-EEEEE CS
  Alpha_adaptinC2   3 vvlyekddlqIgfkfekperpgqiritlsftNkssqpisnfsfqaavpkslklq.....lqppsstvlppnpggqitqvllienpskkplrmrl 91 
                      ++lye+ ++qIg+++e+  r++++++  +f+Nks++p+++f+++++  +s k +        p+stv p   ggq++qv+++e ++ ++ ++++
       CCE28950.1 724 GILYEDGQMQIGVRSEY--RGQMACLITYFSNKSPSPMTSFTTTLDLDQSEKSKlswdvKGLPDSTVAP---GGQTQQVVMFESKRVFEKSPTM 812
                      89***************..*******************************9999555544456666666...********************** PP

                      EEEEECTCEEEEEEEEEEE- CS
  Alpha_adaptinC2  92 risykvgqaikeqidvlkfp 111
                      risy+   a++ q  +lk+p
       CCE28950.1 813 RISYL---AGALQAVTLKLP 829
                      *****...888888888887 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.5e-05     0.075       8      97 ..     342     430 ..     337     439 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.5e-05
     RTP1_C1   8 lqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevl.klLleeyeeenekeslderlk 97 
                 +q+ +  vr  gl  +++l+ + +  +++ i++  +++l +Lkd d  v  +   +L +++d+ +++++  +Ll+  ++++     +  lk
  CCE28950.1 342 IQSRETNVRYLGLEAMTHLAARTE--TLIPIKQHQDIILGSLKDRDISVRRKGLDLLYSMCDATNAKIIvGELLQFLQNADFAIREEMVLK 430
                 799999***************998..*************************************9998863677776655555555555555 PP

>> AP4E_app_platf  Adaptin AP4 complex epsilon appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.1e-05     0.094       1      98 [.     838     949 ..     838     951 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.1e-05
  AP4E_app_platf   1 PltisteeFgklWls..lsserkqklk...ssqvstlsel.kalleklslhvVevig...nEgiaAcqllsss...kvcllhvkv..sagvldvt 81 
                     P+++s e+F k+W++    s ++q +     ++++ ++++ k++ e ++ +  ++++   ++++ A  l  s+     cll ++   s +++ +t
      CCE28950.1 838 PADLSAEDFFKRWKQigAGSREAQAIFgvsGTRKEISESFvKNTVEGFRWRLLDMVDpnpKNVVGASVLHTSEggkFGCLLRLEPnySTQMIRLT 932
                     8999**********944345555666567688888999999*******977666666644899999999988763345777766588******** PP

  AP4E_app_platf  82 lrssdkqladvvlkacq 98 
                     +r++d+++++v lk +q
      CCE28950.1 933 IRATDESVPSVFLKLMQ 949
                     **********9999887 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.5   0.00012      0.36      72     195 ..     266     391 ..     262     427 .. 0.82
   2 ?   -3.7   0.0       2.3   6.9e+03     193     218 ..     541     566 ..     537     568 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
     CLASP_N  72 tgchllkelaiqlkeqldpmveillptLlkl.lgdtKkiisqnanqal....aallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshk 165
                 +++ ll+ ++  + +++  m+++ l+ +l+l + ++K++  +na++a+      l+ ++  ++ +++ +s+ l ++  q Re+ + +L +    +   +
  CCE28950.1 266 KLIRLLQYFSPSEDTHVRDMIRQSLQKILNLaMEAQKNVQQNNAQNAVlfeaINLIIHLDTEHALMKQISSRL-GRFIQSRETNVRYLGLEAMTHL--A 361
                 6889**********************99998467889999999*99984444568888886666677776655.8999999999999987655555..6 PP

     CLASP_N 166 skleasllldliekslkkgleDanptVRet 195
                 ++ e    ++++++++   l+D + +VR++
  CCE28950.1 362 ARTETLIPIKQHQDIILGSLKDRDISVRRK 391
                 7888888889*****************987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.3
     CLASP_N 193 RetaRstfweffkvwPsrAksllssl 218
                 R    s+f++f + +P+   +ll ++
  CCE28950.1 541 RAMILSCFIKFVNLFPEIKPQLLHTF 566
                 56666899999999999877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (964 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 6739.16
//
Query:       CCE28951.1  [L=262]
Description: uncharacterized protein CPUR_02641 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-20   74.2   0.0    1.3e-20   74.0   0.0    1.1  1  Ala_racemase_N  Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   7.5e-25   1.3e-20      14     219 .]      25     253 ..      13     253 .. 0.83

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 7.5e-25
                     HHHSCT.....TSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTS.CSEEEEESC...STGGGHHHHHHTTEEEEESSHHH CS
  Ala_racemase_N  14 ralagp.....gaklmavvKanayghgavevaralaeggadgfgvatleEalelreagi.tapilvleg...fspeelaalaeydltvtvdsleq 99 
                     ++++g+     + +l+av+K   +++  + +++ + +  +++fg+++ +E+ + ++    + ++  ++g    + + la++ +  ++  +d+l++
      CCE28951.1  25 KDRIGAlangrNIRLVAVSKL--KPANDILALHQAPTS-HEHFGENYAQELSQKAQLLPgSIKWHFIGGlqsGHCKTLAKIPNLFCVSSIDTLKK 116
                     54442234445788*******..**********99877.*************888887777788888885434667777777789999******* PP

                     HHHHHHHHHH......TTS-EEEEEEBESSSS..SSSBSC.HHHHHHHHHHHH.TTTEEEEEEE-S-SSTTSTS...HHHHHHHHHHHHHHHHHH CS
  Ala_racemase_N 100 lealaaaare......agkplrvhlkidtgmg..RlGftp.eeleellealaa.lpglrleglmtHfasadepd...eeteaqlarfeealeele 181
                     +  l++ + +      +  ++ vh++++t+++  ++G++p ee  +l++++ + +p+l+l glmt+ a a +++   +  ++++ +++e ++ ++
      CCE28951.1 117 ATLLNSSRGNllasdpSLPKISVHVQVNTSGEeaKSGCAPgEETVSLCREIINsCPNLHLLGLMTIGAIARSKAttaDNRNEDFVALTEQRDLVS 211
                     ********99*****99************9999***************9876648***************9888663444448888888888887 PP

                     HTT.GGGS..EEEEESHHHHHHS.GGGTTEEEESGGGGT-SS CS
  Ala_racemase_N 182 kag.lrpp..vvslanSaailla.aahfdmvRpGialyGlsp 219
                     k+  l+     +s+++S ++  a  + + +vR+G+ ++G +p
      CCE28951.1 212 KELgLEEGrlELSMGMSEDFEGAvTMGSAEVRVGSTIFGQRP 253
                     77766655689************5467************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1975.20
//
Query:       CCE28952.1  [L=385]
Description: uncharacterized protein CPUR_02642 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-05   24.2   0.2    0.00015   22.0   0.1    2.2  2  COG5           Golgi transport complex subunit 5
  ------ inclusion threshold ------
      0.037   13.9   0.8       0.12   12.3   0.8    1.9  1  HSBP1          Heat shock factor binding protein 1
       0.15   12.2   0.2        9.1    6.3   0.0    2.4  2  Aconitase_B_N  Aconitate B N-terminal domain
       0.73    9.7   5.1       0.46   10.3   0.8    2.8  3  UVR            UvrB/uvrC motif


Domain annotation for each model (and alignments):
>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   3.3e-08   0.00015       2      71 ..      49     120 ..      48     133 .. 0.92
   2 ?   -2.0   0.0      0.82   3.7e+03      49      69 ..     327     347 ..     324     359 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 3.3e-08
                 XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5   2 aFLepdFdpksfanallk..atnnnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlsksksls 71 
                 +FL+p Fd++s+ na+l   a+++++++++  ++pl  l+  +q l ++l+ ++t+  ++L++ +++++   
  CCE28952.1  49 DFLNPAFDAASYLNAALPplAAKGATNSSAHNAVPLPELSAQTQTLLSQLNAQTTRMSDTLTQLTDDILRSG 120
                 8****************98899*****************************************999987665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.82
                 XXXXXXXXXXXXXXXXXXXXX CS
        COG5  49 lrqlitsnhleLlehlsksks 69 
                 l + + ++h +L+ ++++ + 
  CCE28952.1 327 LAKMVEDRHRDLMREMDQAAR 347
                 667888999999999887665 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.8   2.6e-05      0.12       2      32 ..      86     116 ..      85     119 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
       HSBP1   2 eLtavVenlLqqlqdkFqtmsdqilsriDdM 32 
                 eL+a  ++lL+ql+   ++msd++++  Dd+
  CCE28952.1  86 ELSAQTQTLLSQLNAQTTRMSDTLTQLTDDI 116
                 89**********************9998886 PP

>> Aconitase_B_N  Aconitate B N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.002       9.1       3      64 ..       5      65 ..       3      80 .. 0.82
   2 ?    3.7   0.1     0.013        57      10      54 ..      77     121 ..      69     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.002
  Aconitase_B_N  3 rkhveeraalgipplPLdaeqtaelvellknpkageeellleLltnrvppGvdeaayvKAef 64
                   ++h+++r++ ++  lP+ a qta   +    +++++ ++  e+l++  +p  d a+y  A+ 
     CCE28952.1  5 QAHIHQRTSSNVVSLPIRAGQTAPKPSDAAIQPKST-HTSDEFLRDFLNPAFDAASYLNAAL 65
                   689*******************98877777666655.7889999999999999999999875 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.013
  Aconitase_B_N  10 aalgipplPLdaeqtaelvellknpkageeellleLltnrvppGv 54 
                    +a++  plP   +qt++l+++l+++++  +++l +L  +  + G 
     CCE28952.1  77 SAHNAVPLPELSAQTQTLLSQLNAQTTRMSDTLTQLTDDILRSGS 121
                    5667789998899***********999999999999887777775 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.1   5.1e+03      26      32 ..     145     151 ..     145     152 .. 0.88
   2 ?   -1.0   0.0      0.36   1.6e+03      26      33 ..     276     283 ..     275     285 .. 0.89
   3 ?   10.3   0.8    0.0001      0.46       2      19 ..     333     350 ..     332     350 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
         UVR  26 lRDqina 32 
                 lRD in+
  CCE28952.1 145 LRDDINK 151
                 8****97 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.36
         UVR  26 lRDqinal 33 
                 lRD+i++l
  CCE28952.1 276 LRDEISNL 283
                 8****987 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0001
         UVR   2 klikeLeeemeeAaened 19 
                  + ++L +em++Aa++ed
  CCE28952.1 333 DRHRDLMREMDQAARRED 350
                 57899************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       998  (0.055664); expected 358.6 (0.02)
Passed bias filter:                      646  (0.036031); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2592.84
//
Query:       CCE28953.1  [L=540]
Description: related to nif-specific regulatory protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-23   83.2   3.5    3.8e-23   82.6   3.5    1.2  1  Sds3      Sds3-like


Domain annotation for each model (and alignments):
>> Sds3  Sds3-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   3.5   2.1e-27   3.8e-23       2     169 ..      37     238 ..      36     295 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 2.1e-27
        Sds3   2 leklskiessFaelRDklYrerLteLqteltllqqGt........................................hpellrklrdleeerDaeLkrl 60 
                 +++l+ ++++F+++ D  Yr++L+++q+e++l+q  +                                         p++l++++dl e rD ++++ 
  CCE28953.1  37 MDRLATMTERFQREQDLTYRDQLQKIQYETNLVQRFDpyasnalevsaklqqehrqtqgppvlaengrslmdmagikFPKFLDEIEDLIEIRDFQMTQS 135
                 789************************************************************************************************ PP

        Sds3  61 rlreeyqlkriekefkadiekakqeheklvkllkeklyeelekkikrLkeeklllDlananslkktrshtaglanesatste....pvelltdrrslrt 155
                 ++  + +++++ + + +++e ak eh  l+ +l+++l+++l++k++rL +ek+ l++ ++++l         l+n++ +s +    p++++++r ++  
  CCE28953.1 136 KNEYDRKVREYHNTYAYKVETAKREHGALTGTLRDRLINTLTQKKNRLSREKEVLEINDSSAL---------LLNPNHFSLTnpgsPGGTHGKRATRL- 224
                 *********************************************************999999.........9******9999999999999999887. PP

        Sds3 156 nsdsdflqelsdle 169
                 ++d++++q +sd++
  CCE28953.1 225 RKDAEDMQLFSDKK 238
                 89999999999933 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       927  (0.0517039); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:01.77
# Mc/sec: 925.14
//
Query:       CCE28954.1  [L=280]
Description: related to 7alpha-cephem-methoxylase P8 chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       199  (0.0110993); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2066.59
//
Query:       CCE28955.1  [L=708]
Description: related to ars binding protein 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-79  265.5   0.0    3.8e-79  264.7   0.0    1.4  1  Abp2           ARS binding protein 2


Domain annotation for each model (and alignments):
>> Abp2  ARS binding protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.7   0.0   2.1e-83   3.8e-79       1     169 [.      28     196 ..      28     198 .. 0.99

  Alignments for each domain:
  == domain 1  score: 264.7 bits;  conditional E-value: 2.1e-83
        Abp2   1 lPsrdvtdetiedayvafilycnpavpldtdtselrkafrapPksdgksfsiftlfelikkleekeiktWaelalelGveppdaekeqstqkvqqyavr 99 
                 lP+r v+++tiedayv+fi+ycnpa+pl++dt++lr+afr+pPks gk f++ft+f+l++k+ ++eiktWael+++lGveppd  k++s+qkv+qy+vr
  CCE28955.1  28 LPDRRVNASTIEDAYVSFIFYCNPALPLSADTESLREAFRTPPKSCGKVFDTFTIFDLVQKFYQREIKTWAELTTTLGVEPPDPAKDESAQKVAQYGVR 126
                 8************************************************************************************************** PP

        Abp2 100 lkrWmramhvdaffeylldkpheyyteipeeseelaeevrdgvaleedlalrallPeikPkrGrkkaede 169
                 lk+Wm++mhv+affeyl++ p++y+t+ip++ +++   vrdgva+e+d+alrallP i+P+rGrk++e++
  CCE28955.1 127 LKKWMNSMHVKAFFEYLMNIPNDYWTRIPSDPNPVGIPVRDGVAIEDDMALRALLPYIRPRRGRKRPEED 196
                 ******************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4794.57
//
Query:       CCE28956.1  [L=892]
Description: related to mitochondrial rRNA processing protein PRP12 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.7e-156  519.5   0.0     1e-155  518.9   0.0    1.3  1  RNA12     RNA12 protein
    1.2e-07   31.9   0.0     0.0093   15.9   0.0    2.3  2  ATPase_2  ATPase domain predominantly from Archaea
    2.8e-05   23.8   0.0    0.00025   20.8   0.0    2.3  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
    0.00058   19.9   0.0     0.0013   18.8   0.0    1.5  1  DUF2487   Protein of unknown function (DUF2487)
  ------ inclusion threshold ------
      0.024   15.0   0.0      0.076   13.4   0.0    1.9  1  AAA_16    AAA ATPase domain


Domain annotation for each model (and alignments):
>> RNA12  RNA12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  518.9   0.0  2.8e-159    1e-155       1     442 [.     411     847 ..     411     849 .. 0.94

  Alignments for each domain:
  == domain 1  score: 518.9 bits;  conditional E-value: 2.8e-159
       RNA12   1 RkekiedlkewleEnvntFivvkGPrGSGkkeLvldrvlkdrkkvlvidCdelvkarndaelisaaAsqlGYfPvFswlnsissliDlavqgliGqkag 99 
                 R+e ie+l++wl+ + +tF+vv+GPrGSGk e+v+d++l+ rk+vl +dC+ +v+a ++a++i+++A  +G++PvFsw nsiss++Dlavq+++G kag
  CCE28956.1 411 RRELIEQLRNWLDGSSDTFVVVTGPRGSGKLEMVMDQALAGRKNVLLVDCKPIVDASGEAGTIKRLAVAVGFRPVFSWANSISSMVDLAVQSTTGVKAG 509
                 8899*********************************************************************************************** PP

       RNA12 100 lsetkeaqlknileiaaaalkdialeerkkedkaatlkeedyleahpeakPvvvidnflakaekngvvykklaeWaasLvqsniahVifltedvsaska 198
                 +set+++q+++il+++++alk+i l +r+k+dk+a+l+e+ yl+ahpe +Pv+vidnfl+++e +++vy+k+a+WaasLvq+niahViflt+d s+sk+
  CCE28956.1 510 FSETLDSQVNKILHTTTKALKEIGLATRSKRDKDAQLSEDAYLDAHPESRPVIVIDNFLHRNEGTSIVYDKIADWAASLVQNNIAHVIFLTSDGSFSKP 608
                 *************************************************************************************************** PP

       RNA12 199 LskaLpnqvfktislgDaseesarkyVlsklkeeaekeekktassesaakdeeeseeqkkkdkaasakleekdlkeldealeklGGRltDLealvrrvk 297
                 Ls+aLp++vf+tislgD ++++a+++V+s+l+++a+++         a++++   +++ +++   + ++++ dl+ lde++e+lGGRltDLe+l rr++
  CCE28956.1 609 LSRALPDRVFRTISLGDLDHKVAKNFVTSRLTDDASATP--------ATTET---SKDPDNQ---ALTTKRLDLTGLDECIETLGGRLTDLEFLSRRIR 693
                 *******************************66644432........22222...2222222...22346679************************** PP

       RNA12 298 sgetpkeAveeiieqsaeeilkmfll..dseeakkakwtkeqaWklikklskkgsieynellleelfkg.......saesalkaLekaelisvstedgr 387
                 +g+tpk+Av+ei+ ++a++++k+fll    +++ ++kw++eqaW+l+k+l+++ s++y+++ll++ f +       ++++al+aL+ +eli+++ ++gr
  CCE28956.1 694 AGQTPKQAVDEIVCETATDVVKIFLLakPPTDDPDRKWSPEQAWHLVKSLAESPSLRYHQVLLSPAFASstspnatDGDAALEALASSELITLKMHQGR 792
                 *************************9655678999**********************************99999999999******************* PP

       RNA12 388 pskikagkPvyraafkrlvsdkvlkavlelevleklikleekkikklEeElrllk 442
                 p++i agkP+ +aaf  lv d+vlka++++++l++l+++e + i+++E El+ l+
  CCE28956.1 793 PKYITAGKPLHQAAFGVLVRDRVLKAKMDMALLKELVRVEGRVIDAVERELTVLG 847
                 ***************************************************9997 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.6e-06    0.0093       4      37 ..     411     444 ..     409     454 .. 0.88
   2 !   13.4   0.0   1.5e-05     0.054      97     202 ..     539     636 ..     493     650 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.6e-06
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLl 37 
                 R + +++l+++l+ +++++++++Gp+gsGK  ++
  CCE28956.1 411 RRELIEQLRNWLDGSSDTFVVVTGPRGSGKLEMV 444
                 77789*************************7665 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.5e-05
    ATPase_2  97 eksklvfkaielllekikkkgkkiiiiiDelqklidlglngaellvkeLlnliesltkekhlcvviclsSeglfiervyneselegrh.kyilvddldk 194
                 ++ k+++ + +++l++  +   +++i+iD +         + ++ v++ +  +   + ++++++vi l+S+g f +    +  l +r+ ++i++ dld 
  CCE28956.1 539 KRDKDAQLSEDAYLDAHPE--SRPVIVIDNFLHRN-----EGTSIVYDKIADWAASLVQNNIAHVIFLTSDGSFSK--PLSRALPDRVfRTISLGDLDH 628
                 4444444444444444333..47******998766.....7888888888888888999*****************..333345556526699*****9 PP

    ATPase_2 195 etalnflk 202
                 + a+nf+ 
  CCE28956.1 629 KVAKNFVT 636
                 99999976 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.29     1e+03      10      32 ..     199     220 ..     195     223 .. 0.82
   2 !   20.8   0.0     7e-08   0.00025       8      64 ..     250     306 ..     249     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.29
                 SSHHHHHHHHHTTSCEEEEEEEE CS
       RRM_1  10 vteeeLkelFskfGpiksiklvr 32 
                 + e+ Lk +Fs+f +i +++lvr
  CCE28956.1 199 LQEQPLKPWFSPFRGI-TARLVR 220
                 67999********999.777776 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 7e-08
                 TTSSHHHHHHHHHTTSCEEEEEEEEE..TTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1   8 pdvteeeLkelFskfGpiksiklvrd..etgkskgfafVeFeskedAekAlealngkkl 64 
                 ++++ee L+ +F+ +G+i  +++ ++    +   ++a +eF+  +dA  A ++++g  +
  CCE28956.1 250 EELSEESLYSMFRRYGKI--ADILPQpfDSKVVPKYAHIEFPRLSDAIMARNCMHGFVV 306
                 6899**************..888888889999************************877 PP

>> DUF2487  Protein of unknown function (DUF2487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.5e-07    0.0013      69     131 ..     578     639 ..     563     643 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.5e-07
     DUF2487  69 verlkeweeelkeegfkhvvfitsdeewkelee.elegkliwvpaiplesldesqkqkiveeqv 131
                  +++++w+++l ++++ hv+f+tsd ++ +  +  l ++++   +i+l +ld+++++++v +++
  CCE28956.1 578 YDKIADWAASLVQNNIAHVIFLTSDGSFSKPLSrALPDRVF--RTISLGDLDHKVAKNFVTSRL 639
                 4699***********************97765538888875..78999******9999998776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.1e-05     0.076       5      76 ..     411     492 ..     408     591 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
      AAA_16   5 ReeeleqLlsalervrsgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdqlesa..............ipysalaqal 76 
                 R+e +eqL++ l+    g++   v+++G++G+GK  +v   +  + +++++++ +k     s+              +p   +a+ +
  CCE28956.1 411 RRELIEQLRNWLD----GSSdTFVVVTGPRGSGKLEMVMDQA-LAGRKNVLLVDCKPIVDASGeagtikrlavavgfRPVFSWANSI 492
                 8889999999888....333379***********77773322.23444455566666555333444544444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (892 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 6227.89
//
Query:       CCE28957.1  [L=237]
Description: uncharacterized protein CPUR_02647 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-23   80.5   2.4    8.9e-23   80.5   2.4    1.9  2  DUF3128   Protein of unknown function (DUF3128)


Domain annotation for each model (and alignments):
>> DUF3128  Protein of unknown function (DUF3128)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   2.4   4.9e-27   8.9e-23       2      79 .]     112     194 ..     111     194 .. 0.91
   2 ?   -1.0   0.1      0.13   2.3e+03      50      74 ..     214     236 ..     202     237 .] 0.53

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 4.9e-27
     DUF3128   2 lscseafdellsCyslggqfkqyYryGeldnCsekwedfkfClklk....tkksekiqeilkkrerekkakk.kssedvWelR 79 
                 + c + f+ ++sC slggqf ++Yr+G++++Cse+w+df+fC++++      k++ i+++++++  +k   + +ssedvWe+R
  CCE28957.1 112 MGCAQTFELAWSCSSLGGQFMSMYRHGNMRECSENWDDFWFCMRTRaysgPVKADLIKQHYRNKAYRKYGGDkPSSEDVWERR 194
                 89********************************************888878888888888888888866669********98 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.13
     DUF3128  50 ksekiqeilkkrerekkakkkssed 74 
                 + ++++e ++++er+ +   +  ed
  CCE28957.1 214 EVNAARERMREEERKASI--RDAED 236
                 444555555555555433..35555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1854.90
//
Query:       CCE28958.1  [L=665]
Description: probable heat shock protein 70 (hsp70) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.8e-249  829.0   5.9   2.9e-249  828.3   5.9    1.3  1  HSP70           Hsp70 protein
    2.5e-17   62.7   0.0    2.9e-16   59.2   0.1    2.1  2  MreB_Mbl        MreB/Mbl protein
     0.0019   18.0   0.0     0.0039   16.9   0.0    1.5  1  FGGY_C          FGGY family of carbohydrate kinases, C-termin
  ------ inclusion threshold ------
      0.029   13.6   0.0      0.055   12.7   0.0    1.4  1  StbA            StbA protein
      0.034   13.4   0.1      0.066   12.5   0.1    1.4  1  Hydantoinase_A  Hydantoinase/oxoprolinase
       0.14   12.6   0.7         30    5.1   0.0    3.2  3  FtsA            Cell division protein FtsA


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  828.3   5.9  9.6e-253  2.9e-249       1     598 [.       5     625 ..       5     626 .. 0.95

  Alignments for each domain:
  == domain 1  score: 828.3 bits;  conditional E-value: 9.6e-253
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEE.......... CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykv.......... 89 
                 ++GiDLGtt+s+v+++++++ e+ +n++gnrttPs+vaF+++erl+G+aAk+q+++np+ntvf++KrliGrk++dpev +++k++p+kv          
  CCE28958.1   5 AVGIDLGTTYSCVGIFRDDRCEIFENDQGNRTTPSFVAFNDTERLIGDAAKNQVAMNPSNTVFDAKRLIGRKYNDPEVLADMKHFPFKVgrhmknkgnd 103
                 59**************************************************************************************93332222211 PP

                 ...EEETTSBEEEEEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS CS
       HSP70  90 ...vkkengkavveveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd 183
                    + ++++k++v+v++ ge  +f+pe+is+m+L k++etaea lg kv++avitvPaYfnd+qRqatkdAg iAGLnvlRi+NepTAaa+aYGldkk 
  CCE28958.1 104 ewvEDTTDDKPYVTVQYLGEtkQFSPEEISSMILIKMRETAEAKLGVKVKNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDKKV 202
                 1112234567889999999999**************************************************************************996 PP

                 .SCEEEEEEEEXSSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEE CS
       HSP70 184 .kernvlvyDlGggtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleiet 281
                   ernvl++DlGggtfdvS+l++e+G+fevk+TagDthlGGedfD++lv+h+++efk+k++ dls++++al+rl++a+e++K++LSs  q++ ++ei++
  CCE28958.1 203 eGERNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRLVNHFANEFKRKNKKDLSSNSRALRRLRTACERLKRTLSS--QASGKIEIDA 299
                 59*************************************************************************************..99******** PP

                 EETTTEEEEEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT.CHHBSSSHTTTHHHHHHHHHHHHHCTC. CS
       HSP70 282 vdedgkdlseklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsktvnpDeavaiGAAvqagvlsge. 378
                 + e g d++ +l+Ra+feel++dl++ t++pv ++l dak++k++++e+vlvGGstRiP+vq l++++f+ ke++k++npDeava GAAvqa++lsg+ 
  CCE28958.1 300 LYE-GIDFNADLNRARFEELCQDLFRSTIQPVDRVLTDAKIDKSQVHEIVLVGGSTRIPRVQRLISDYFNgKELNKSINPDEAVAHGAAVQAAILSGDt 397
                 ***.*****************************************************************99**************************97 PP

                 ..GCSHCCEEEEBESS-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEET CS
       HSP70 379 ..eevkdllllDvtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdida 475
                   ++++++lllDv pLslgiet+gg+mtkli+rnttiptkks+vfst++dnq+ v i+v++ger+ +kdn+l+g+fel+gippaprGvpqieVtfd+da
  CCE28958.1 398 ssKSTNEILLLDVAPLSLGIETAGGMMTKLIPRNTTIPTKKSEVFSTFSDNQPGVLIQVYEGERQRTKDNNLMGKFELTGIPPAPRGVPQIEVTFDLDA 496
                 777899********************************************************************************************* PP

                 TSCEEEEEEETTTCCEEEEEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..GGGSTHHHH....HHHHHHHHHH CS
       HSP70 476 nGiltvsakdketgkeeeitieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee..aekvseaek....ekvesaieeL 567
                 nGi++vsa +k+tgk+++i i++++g ls+eeie+m  dae+++e+d+++ +++ akn +e+++ysl+++l++    ek+++++k    +++++ +++L
  CCE28958.1 497 NGIMNVSAVEKGTGKSNKIVITNDKGrLSKEEIERMLADAEKYKEQDEAEGRRVAAKNGLESYAYSLKNTLSDPkvDEKIEAEDKtkltAEIDRVVAWL 595
                 **************************9*********************************************988899***999967777777888888 PP

                 HCHTTSSCHHHHHHHHHHHHHHHHHHHHHHH CS
       HSP70 568 keeleeeekeeieakteelkkvvekiaekly 598
                 +e+ +++++ee+e++++el++++++i+ k y
  CCE28958.1 596 DES-QAASREEYEEHQKELEAIANPIMMKFY 625
                 888.68889****************998876 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.055   1.6e+02       4      51 ..       6      59 ..       4      75 .. 0.68
   2 !   59.2   0.1   9.6e-20   2.9e-16      79     317 ..     138     388 ..     128     395 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.055
                EEEEE-SSEEEE..EETTTEEEEEE.......ES-EEEETTT--EEEESHHHHTTTT CS
    MreB_Mbl  4 lgiDLGtantlv..yvkgkgivlne.......psvvAikkktkkvlavGeeAkkmlg 51
                +giDLGt+   v  +  ++  ++++       ps vA++ +++    +G+ Ak+ + 
  CCE28958.1  6 VGIDLGTTYSCVgiFRDDRCEIFENdqgnrttPSFVAFNDTERL---IGDAAKNQVA 59
                89*****9988765777777777532333333888888776543...4666666555 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 9.6e-20
                 HHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--..TTSSS-EEEEEE-SS-EEEEEEETT.EEEEEEE.. CS
    MreB_Mbl  79 kyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglp..veepsgnmvvdiGggttevavislg.givtsks.. 172
                  ++ + ++ k  ++ ++ vi+vP   ++ +r+A k+a   aG +   +i+ep aAAi  gl+  ve  +  ++ d+Gggt +v+++++  gi + ks  
  CCE28958.1 138 IKMRETAEAKLGVKVKNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDkkVEGERNVLIFDLGGGTFDVSLLTIEeGIFEVKSta 236
                 33334444466678899****************************************77775449999999****************853788777733 PP

                 ..ES-SHHHHHHHHHHHHHHHHS......EE--HHHHHHHHHHH-BSS--HHHH.EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH CS
    MreB_Mbl 173 ..vrvaGdeldeaiikyirkkyn......lliGertaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLe 262
                    +++G+++d+ ++++  ++++      l   +r  ++++++   ++ + +++ + +i+   l +g+  ++ ++ ++ +e  ++ +++ ++ v +vL 
  CCE28958.1 237 gdTHLGGEDFDNRLVNHFANEFKrknkkdLSSNSRALRRLRTACERLKRTLSSQaSGKIEIDALYEGIDFNADLNRARFEELCQDLFRSTIQPVDRVLT 335
                 33589***********9977775222222566666677777777777766655556777778999*********************************9 PP

                 TS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS.-EEE-SSTTTHHHHHHHH CS
    MreB_Mbl 263 ktppeLaadivdrgivltGGgallkgldkllseetgl.pvkvaedpltcvakGtgk 317
                 +++ + +  +  + ivl+GG++ +  +++l+s+ ++  + + + +p ++va+G++ 
  CCE28958.1 336 DAKIDKS-QV--HEIVLVGGSTRIPRVQRLISDYFNGkELNKSINPDEAVAHGAAV 388
                 9998855.34..569*******************97515788899*******9875 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.3e-06    0.0039     145     196 ..     321     392 ..     278     393 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.3e-06
      FGGY_C 145 d..................sgkpldrlavdGGgskndllmqllAdilg.vpVerpkt.aeatalGaAilAav 196
                 d                  +++++ +++++GG ++ + +++l+ d ++ + + +  + +ea+a+GaA+ Aa+
  CCE28958.1 321 DlfrstiqpvdrvltdakiDKSQVHEIVLVGGSTRIPRVQRLISDYFNgKELNKSINpDEAVAHGAAVQAAI 392
                 34444444444444444446999************************99888887777************96 PP

>> StbA  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.9e-05     0.055     149     205 ..     192     250 ..     171     302 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.9e-05
        StbA 149 lPagfealkeldeleslLiiDlGGttLDvakvr..gklegiskvkgdskiGvslitdav 205
                    ++  +k+++   ++Li DlGG t Dv+ ++    + ++  + gd ++G     + +
  CCE28958.1 192 AAIAYGLDKKVEGERNVLIFDLGGGTFDVSLLTieEGIFEVKSTAGDTHLGGEDFDNRL 250
                 4456778899*******************975411556666777788888866555554 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.2e-05     0.066      58      99 ..     185     226 ..     134     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
  Hydantoinase_A  58 ilSGPaaGvvgaaatsklagekkvItfDmGGTstDvslikdg 99 
                     i+  P a ++++    k +ge++v+ fD+GG ++Dvsl+   
      CCE28958.1 185 IINEPTAAAIAYGLDKKVEGERNVLIFDLGGGTFDVSLLTIE 226
                     6666778888777778********************987643 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.01        30       1      19 [.       6      24 ..       6      72 .. 0.91
   2 ?    4.0   0.0     0.022        67       4      96 ..     212     378 ..     209     392 .. 0.57
   3 ?   -1.0   0.1      0.78   2.3e+03      34      54 ..     518     542 ..     500     618 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.01
                EEEEE-SSSEEEEEEETTE CS
                xxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedga 19
                +++D+G++ ++v +++d++
  CCE28958.1  6 VGIDLGTTYSCVGIFRDDR 24
                68**************975 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.022
                 EE-SSSEEEEEEETTEEEE.....EEEES-....-HHHHHHH...................HHHHHT--HHHHHHHHHHH--S--.............. CS
                 xxxxxxxxxxxxxxxxxxx.....xxxxxx....xxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxx.............. RF
        FtsA   4 DiGagktdvavaedgalvh.....lrvigv....ggngitkd...................iakalrtaveeAerikikyGsala.............. 60 
                 D+G+g+ dv+++  ++ ++               gg+ +++                     ++alr    + er+k++  s+ +              
  CCE28958.1 212 DLGGGTFDVSLLTIEEGIFevkstA----GdthlGGEDFDNRlvnhfanefkrknkkdlssNSRALRRLRTACERLKRTLSSQASgkieidalyegidf 306
                 6666666666655543222222221....1334455555555555555555555666666667888888888889996666655555555666665555 PP

                 ........EEEEEHHHHH...................................GGGGSTTHHHHHHHHHT-...HHHT-G CS
                 ........xxxxxxxxxx...................................xxxxxxxxxxxxxxxxxxx.xxxxxxx RF
        FtsA  61 ........ekeigrkels...................................ggsalpnleelaeralspk.leevsdp 96 
                                  +                                   g++ +p +++l+++ ++ k l++  +p
  CCE28958.1 307 nadlnrarF--------EelcqdlfrstiqpvdrvltdakidksqvheivlvgGSTRIPRVQRLISDYFNGKeLNKSINP 378
                 444444440........155555555555566666666666666666999999999999999999999855432223333 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.78
                 HHH....HHHHHT--HHHHHHHHHH CS
                 xxx....xxxxxxxxxxxxxxxxxx RF
        FtsA  34 tkd....iakalrtaveeAerikik 54 
                 t+d     ++ +   +++Ae+ k +
  CCE28958.1 518 TNDkgrlSKEEIERMLADAEKYKEQ 542
                 5555554445566777788888832 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      753  (0.041999); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 4530.62
//
Query:       CCE28959.1  [L=654]
Description: related to sorbitol transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-80  269.1  17.9    1.2e-78  265.0  17.9    2.1  1  Sugar_tr  Sugar (and other) transporter
    1.4e-10   40.6  38.5    1.3e-06   27.6  24.1    3.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.0  17.9   1.3e-82   1.2e-78       4     452 .]     129     562 ..     125     562 .. 0.89

  Alignments for each domain:
  == domain 1  score: 265.0 bits;  conditional E-value: 1.3e-82
                 HHHHHHHHHHHH.HHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHH.HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   4 vaalggllfgYd.tgvigafltllkfaknfglsksksskeessvlsglivsiflvGa.iiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 + ++g  ++g+d tg  ga l+++ ++   g ++s++      +l+gl+ s+ ++G  ++G+ ++ ++  +fGR+ ++ ++a +++   +  a+++   
  CCE28959.1 129 TCSIGAAVQGWDqTGSNGANLEFPRALGIDGPEVSHK------MLVGLVNSAPYIGTaLVGCWLTDPINSYFGRRGAIFVSANFCLWPVLAGAFCN--- 218
                 4556668888885567777777777555555555554......5679*********6269******************999999999999999999... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylv 199
                 ++++l+++R+l+G+g+G+                  galv+ +ql+++fGi+++++ +lgl + ++ + wr+ lg++++pa+ l++l++f+PESPr+++
  CCE28959.1 219 TWQQLFACRFLLGVGMGTKAS--------------TGALVMSWQLWTAFGIFLGTCANLGLMRLQG-EVWRYQLGSAFIPAIPLALLIFFCPESPRWFI 302
                 9****************8654..............5******************************.9******************************* PP

                 HTT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH.......HTTHHHHSH......HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..H CS
    Sugar_tr 200 ekgkeeeakevlaklrge.edadrelaeekdsleaeqeee..kaswkellsskt...vrqrlligvvlqifqqltGinaimyysptifenlglsks..l 290
                 +k+++ +a ++l +lr++  +a r+l  +  +l+ eqe     ++++++++ ++   +r+++l  + ++i+qq++Gin+i +ys+ +f+++g +k   l
  CCE28959.1 303 KKNRYRDAMRSLCRLRNTrIQAARDLYYIHVQLQVEQEYAghGNYVNRFIELFKiprNRRATLASFIVMIAQQMCGINIIAFYSSDVFREAGANKLeaL 401
                 **************99997555666666666666665444668888888888888889***************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHH CS
    Sugar_tr 291 lvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskal 388
                 ++t ++g +nf++ f a++++d fGRR lll+ +  ma  ++  g    ++++a+      ++  f++lf+a++++g gpvp+ +++E+fp+s R +++
  CCE28959.1 402 WATWGFGLINFLFAFPAVWTIDTFGRRSLLLFTFPQMAWTLLAAGlCTLIPGTAGP--HLALVALFVYLFAAFYSPGEGPVPFTYSAEVFPLSHREVGM 498
                 ********************************************966666777775..55667778999****************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 389 aiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 a ava+n ++  + +++fp +++++   + f ++a+l++++++ +f+fvpetk rtlee++++f
  CCE28959.1 499 AWAVATNLFWAAVLGITFPLMLDRLDVLGAFGFYACLNIAALVLIFLFVPETKQRTLEELDYIF 562
                 ************************************************************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   8.4     5e-07    0.0044       3     229 ..     132     385 ..     130     393 .. 0.67
   2 !   27.6  24.1   1.5e-10   1.3e-06       4     185 ..     366     558 ..     363     595 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5e-07
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigl...lltlyalgaavaslplGrlsd....rfGrrrvlllglllfalglllllfasslw.lllvlrv 93 
                 ++a++ +++ +  + a      ++lgi++ e++    +  + ++ ++ ++l++ +l+d     fGrr  +++++ + +  +l+++f+++ w  l+++r+
  CCE28959.1 132 IGAAVQGWDQTGSNGANL-EFPRALGIDGPEVSHkmlVGLVNSAPYIGTALVGCWLTDpinsYFGRRGAIFVSANFCLWPVLAGAFCNT-WqQLFACRF 228
                 566677777777777776.4557888888885554434444666777777777777776665899999555555554444588889655.65******* PP

       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg..Wravfyilaivsllafvlfllllpeepperkrkspkeee.. 188
                 l G+g+     +  a + ++++          +++ +++G+ lg  +   l+ + g  Wr+    + i ++ +++   l +++++++r+  ++ + +  
  CCE28959.1 229 LLGVGM-----GTKASTGALVMS---------WQLWTAFGIFLGTCANLGLMRLQGevWRYQLGSAFIPAIPLAL---LIFFCPESPRWFIKKNRYRda 310
                 *****8.....445555555555.........5666666666666666666644445688777777777777777...888899999999988888888 PP

       MFS_1 189 .................................kgtgpaplvpawkallkdpvlw.illialllfffgfsglltl 229
                                                  +g     +++++k+ ++++  + +++++++  ++g++++ ++
  CCE28959.1 311 mrslcrlrntriqaardlyyihvqlqveqeyagHGNYVNRFIELFKIPRNRRATLaSFIVMIAQQMCGINIIAFY 385
                 999999999988888888888888887776666555556666688888888844444444444445555555554 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 1.5e-10
       MFS_1   4 aaflsalarsi...lgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.f...a.....sslw.ll 88 
                 a f++++a  +    ++a+ +  + ++ g+++ e+ +++ +++l  +++++p+ + +d fGrr++ll+++  +a + ll++ +   +     ++l  + 
  CCE28959.1 366 ASFIVMIAQQMcgiNIIAFYSsDVFREAGANKLEALWATWGFGLINFLFAFPAVWTIDTFGRRSLLLFTFPQMAWT-LLAAgLctlIpgtagPHLAlVA 463
                 55666666666333233333336667789***********************************999987555555.2222232222345556666556 PP

       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspk 185
                 l++ +++++ + +  p+  ++ a++fp ++r  +++++ a++ + a++  +  +l+++ l   ++f + a + + a+vl  ++l++++++ ++ ++ 
  CCE28959.1 464 LFVYLFAAFYSPGEGPVPFTYSAEVFPLSHREVGMAWAVATNLFWAAVLGITFPLMLDRLDVLGAFGFYACLNIAALVL--IFLFVPETKQRTLEEL 558
                 6666688888899*******************************99999999999*********************888..6666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 4528.77
//
Query:       CCE28960.1  [L=887]
Description: uncharacterized protein CPUR_02650 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-21   74.9   2.2    1.2e-20   73.9   2.2    1.5  1  MS_channel  Mechanosensitive ion channel
  ------ inclusion threshold ------
      0.011   15.2   0.3      0.024   14.2   0.3    1.6  1  EF-hand_1   EF hand
      0.023   15.1   0.1       0.06   13.8   0.1    1.7  1  EF-hand_7   EF-hand domain pair


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   2.2   2.1e-24   1.2e-20       2     148 ..     463     610 ..     462     653 .. 0.89

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 2.1e-24
                 .HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-.SS-TT-EEESSSEEEEEEEE-SSEEEE.EETTSEEEEEEH CS
  MS_channel   2 kilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfek.pfkiGDlveigdieGtVediglrttki.rtfdgrivtiPn 98 
                 k+l++++++++i i+l++++ ++ + +a +G++ l+l++++  + ++++++ i+lf k p+++GD+ ei++ + +Ve+i+l+ t + +t +++++ +Pn
  CCE28960.1 463 KVLLFVVVLITIFIFLFFFHSSFLTTVATAGTALLSLSFVFAVTTQEFLGSCIFLFVKhPYDVGDRCEISGSQMIVEKISLLYTVFtKTAQNQVTQVPN 561
                 7899**********************************************988888777*********************9877752688999999*** PP

                 HHHHTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-T CS
  MS_channel  99 sslvtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekp 148
                   l +  i N++r s+++   +s+ v ++++++ +e ++ e+ +++++  
  CCE28960.1 562 IVLNNLWIDNVTR-SKAMTESFSVDVSFDTSFEDIELLRAEMEKFVRHPD 610
                 *************.***********************9999999987654 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   4.1e-06     0.024       1      23 [.     412     434 ..     412     435 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-06
                 HHHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfk 23 
                 e +e+F+++D D +G I+++E++
  CCE28960.1 412 EAEEAFNMIDSDLNGDISLDEMV 434
                 679******************97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1     1e-05      0.06      43      68 ..     410     435 ..     384     438 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
   EF-hand_7  43 deelellfkefDtdkdGvisfdEFlk 68 
                 + e e+ f+++D+d +G is+dE+++
  CCE28960.1 410 KAEAEEAFNMIDSDLNGDISLDEMVR 435
                 46799******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5889.99
//
Query:       CCE28961.1  [L=255]
Description: uncharacterized protein CPUR_02651 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-23   81.5   0.0    8.4e-23   81.1   0.0    1.1  1  DLH            Dienelactone hydrolase family
  ------ inclusion threshold ------
      0.023   14.3   0.0      0.038   13.6   0.0    1.3  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
      0.059   12.9   0.0      0.082   12.4   0.0    1.2  1  LIDHydrolase   Lipid-droplet associated hydrolase


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   1.4e-26   8.4e-23      31     216 ..      28     236 ..      22     237 .. 0.87

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 1.4e-26
         DLH  31 diserlaeeGYvalaPdlYarqa......ldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaevpevd 123
                 + ++++a  G+++ aP  Y   +          d a+  r  + +v+k+  e   +d +a+v +l s p ++t+++g++G+C+GG la+  a    ++ 
  CCE28961.1  28 RFARQIAGHGFIVAAPSSYHDFVgpeplnY---DVADTDRGNKFKVEKT-LESYDADSSATVTHLLSLP-TCTGRIGATGMCLGGHLAVRAALDP-RIT 120
                 6789***************99887644322...2222222232334555.78899999***********.******************9977666.9** PP

         DLH 124 aavafYG.....................lspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsre..syne 199
                 a+va++                       s +++l+  a++k+ +  lfg +D+++p + ++ ++++l++a+v + ++ ++ a+HaF +d+ +   y++
  CCE28961.1 121 ATVAYFAtdihsrtlgphpsansshtppPSSNHTLDLFANLKGELSLLFGLKDTHVPDQGRDLIRQKLREAGVVFSFHEFAWAQHAFIRDELSkgRYDP 219
                 ***********************9876666667788999***************************************************988789*** PP

         DLH 200 eaaedawervlelfkqv 216
                 + +++ +e +le+f+++
  CCE28961.1 220 AITKTCFEILLEVFGRI 236
                 *************9986 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.3e-06     0.038      84     131 ..      79     124 ..      68     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.3e-06
                    HHHHHHHHHHHHCTTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEE CS
  Peptidase_S15  84 edgadvidWlakqpwsnGkVgmtGiSYlGttqllaaatgvpalkaivp 131
                    +d ++++  l   p ++G++g+tG+  +G +++ aa   +p++ a v+
     CCE28961.1  79 ADSSATVTHLLSLPTCTGRIGATGMCLGGHLAVRAAL--DPRITATVA 124
                    6889999999999**********************99..555555554 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.4e-05     0.082     220     266 .]     160     208 ..     150     208 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
  LIDHydrolase 220 knkekalvfyfgkkDhWvpeetrdelkellge..eklevde.kgipHaFv 266
                   + k + l ++fg kD  vp++ rd ++++l e    +++ e   ++HaF+
    CCE28961.1 160 NLKGE-LSLLFGLKDTHVPDQGRDLIRQKLREagVVFSFHEfAWAQHAFI 208
                   44444.9***********************9966677778889999**96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1852.71
//
Query:       CCE28962.1  [L=859]
Description: related to E.histolytica surface lectin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1031.6   0.0          0 1031.3   0.0    1.0  1  RHD3       Root hair defective 3 GTP-binding protein (RHD3)
    1.5e-07   31.0   0.1    2.6e-07   30.2   0.1    1.3  1  GBP        Guanylate-binding protein, N-terminal domain
    1.8e-06   28.1   0.0      5e-06   26.7   0.0    1.7  2  Dynamin_N  Dynamin family
      9e-05   22.5   0.0     0.0003   20.8   0.0    1.9  1  MMR_HSR1   50S ribosome-binding GTPase
    0.00086   19.6   0.0      0.003   17.8   0.0    2.0  1  AAA_28     AAA domain
  ------ inclusion threshold ------
      0.035   13.4   0.1      0.061   12.6   0.1    1.3  1  Septin     Septin


Domain annotation for each model (and alignments):
>> RHD3  Root hair defective 3 GTP-binding protein (RHD3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1031.3   0.0         0         0       1     741 [.      56     831 ..      56     833 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1031.3 bits;  conditional E-value: 0
                 EEBTTSSHHHHHHHHS--------TTS------SEEEEE-S-EE....--SSEEEEEEEE-BSSSSSSS-CHHHHHHHHHHHHH-SEEEEEEEGGGTTS CS
        RHD3   1 lGsqStGKSTLLNhLFgTnFsvmdaseRqqTTKGiWlakaknvg....ksepnilvmDvEGtDGrERGEDqdFErksALFalavsevlivNiWehqvGl 95 
                 +GsqStGKSTLLN+LFgT+Fsvm+++eR+qTTKGiW++k+k+ +    k+++nilvmDvEGtDGrERGEDqdFErksALFala+sevli+NiWehqvGl
  CCE28962.1  56 FGSQSTGKSTLLNNLFGTEFSVMSETERRQTTKGIWMSKNKRKEsagaKMADNILVMDVEGTDGRERGEDQDFERKSALFALATSEVLIINIWEHQVGL 154
                 8****************************************9888999*************************************************** PP

                 STTTTHHHHHHHHHHHHHHHCCSHSS---EEEEEEEESE-SSS-HHHHHHHHHHHHHHHHHHS---GGGTT--HHHHEEEEEEEEE-TTT-HHHHHHHH CS
        RHD3  96 yqgaNmaLLKTVfeVnlrLFlkdkdsdrkvlLlfViRDkvgvTplenLektltedlqkiWdslsKPegleessledfFdvefvaLshkelkeeqFkeev 194
                 yqgaNm+LLKTVfeVnl+LFl+dk+s+ ++lL+fViRD++g+Tpl+nL+ tl++dl+kiW+ +sKP+gl++++++d+Fd+ f+aL+hk+l+ ++F +ev
  CCE28962.1 155 YQGANMGLLKTVFEVNLQLFLRDKQSTPRSLLFFVIRDHLGTTPLSNLRTTLIQDLTKIWSTISKPQGLDKAQIQDYFDFGFAALPHKILQADKFVSEV 253
                 *************************************************************************************************** PP

                 HHHHHHHTTS............--S--GGGS-SS-HHHHHHHHHHHHHHHHTTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS......SS-- CS
        RHD3 195 kkLrerfvesk........eiengvfkpeyhkriPadgfslyaeqiWdqieeNkDLDLPtqqvlvAqfrcdEianevleefiaaiaeleekqrelkeaa 285
                 ++L+ rf +++        e+e+gvf peyh+riPadgfs+yae+iWdqi++NkDLDLPtqq+l+AqfrcdEi++evl +f++a+a+lee+q e ++++
  CCE28962.1 254 QNLGTRFTAGHrgskgsdhELEGGVFLPEYHRRIPADGFSVYAEGIWDQIVNNKDLDLPTQQELLAQFRCDEISREVLVAFDEAVAPLEEQQGEASKLG 352
                 *******************9******************************************************************************* PP

                 SS--HHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HCT.TT......THHHHHHHHHHH CS
        RHD3 286 eaglleelgkklaslrekaleeydteAsryekgvyeeKrqeLeekvdsklkalfqavlealrkellekfkeavekalkage......dFaesvkekkkk 378
                 +  ++++lg   +++r+k l +++ +Asry+kgv+++KrqeLe+kvd +lkal+  +l a++k+++++f++av++++kag+      +Fae+v+++kkk
  CCE28962.1 353 KILVFPDLGGMGSTARAKLLGAFEVQASRYHKGVFTRKRQELEAKVDARLKALYVGQLAAAHKAGVTAFSDAVTNKVKAGQkaggsyEFAEIVANEKKK 451
                 *************************************************************************************************** PP

                 HHHHHHHHH.HTTSTTTTS--.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--.................TTCHHHHHHH CS
        RHD3 379 lvekfdeeaeslvveqakwdasdkiilklekdieaviaklrkeelkelvervekkleselseavelllekls.................kevWdrvlke 460
                 ++e f+ ea+ lv++++ w +++ +++ +e ++++v+ klrkee+++l++rve++++s+l++a++l+++kl+                 k++Wdrv++ 
  CCE28962.1 452 TLEIFETEAQGLVIQDLPWTNFQSQYQLFEAELDQVSGKLRKEEMRRLATRVERWVKSRLGDAIGLEFNKLGsgrggtgapetgdqpseKDLWDRVWDV 550
                 *************************************************************************************************** PP

                 HTTSSS.........STSS---TTTTCTTHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHTBBSSTBB----SHHHHCCSSHHHHHHTTSSHH CS
        RHD3 461 fkseveeavsklkdavsgfelseeevdkalknlkkkswlvlekkikeelseekillrlrdrFedvFryDedgvPrlwkkkedieaiykearekaLklls 559
                 f+ +v+ea+s++ d++++f++s+ee ++++++l++ksw+ l+++i+ee++e++ill+lr++Fed+FryDe+gvPr+w++++die+iy++are++L+l++
  CCE28962.1 551 FTGIVKEAESRFADRAKSFDASDEEAEVGMWRLRRKSWVGLRERIEEEVMEGNILLKLRENFEDKFRYDEAGVPRIWRPTDDIEGIYTKARESTLTLIP 649
                 *************************************************************************************************** PP

                 HHTTTB-TTS-B---SS--SSCHHHTTT--.........-------TTTS-TTBSS-HHHHCCSTTCHHHHHHHHHTTTCCTT-XXXXXXXXXXXXXXX CS
        RHD3 560 vlsvirladeseniekveiveledeekseaseesvtsidgldesegeeveeeatiltevkkkellvqFkkeadltvveakrsainnntqiPlyiyvlll 658
                 +ls++rl+ + + ++ v++++ +++ ++ ++ee++ +i+g+de+eg+++eee+t+l+e k+++l+v+Fkk+ad+++veakrsai++  qiP y+y ll+
  CCE28962.1 650 LLSRFRLSTTYAAPDLVSFIGGQPSGAEVGDEEDLAPIGGVDEDEGKSLEEEMTVLSESKRQDLVVRFKKTADGVYVEAKRSAIGGVAQIPWYFYGLLI 748
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        RHD3 659 vLGwNEfvavlrNPlylllllvlglvvyvlyqlnllgpalkvveaamnellklakeklrefleedeevresqetkkssskese 741
                 +LGwNE+ +vlrNP++++ ll+++ ++y +y+lnllgp++++ +aa+n+ +++ak++lr+f++++e++r++  + + +s++++
  CCE28962.1 749 ALGWNEIFMVLRNPFLFVFLLMAAGGTYIAYTLNLLGPMMQMSNAAVNQGVDIAKQQLRDFIASSETARQALDVPARNSSTNN 831
                 ************************************************************************99998887765 PP

>> GBP  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   8.7e-11   2.6e-07      23     114 ..      52     148 ..      31     194 .. 0.71

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 8.7e-11
                 EEEEEEBTTSSHHHHHHHHHTBSSSSESSSCS..SST-SSEEEESCE....-SSSTCEEEEEEEEECBTTTTTSSHHH...HHHHHHHHHHH-SEEEEE CS
         GBP  23 vvaivGlyRkGksfLlnklarkkkGFslrstv..esetkGiliWcep....hpkkekvalvLlDteGlgDveksdvkd...datiFaLavllssvfvYn 112
                  +++ G   +Gks Lln+l + +  Fs+ s +  ++ tkGi++  +        k    ++++D eG+   e+++++d   ++ +FaLa+  s v++ n
  CCE28962.1  52 LISVFGSQSTGKSTLLNNLFGTE--FSVMSETerRQTTKGIWMSKNKrkesAGAKMADNILVMDVEGTDGRERGEDQDferKSALFALAT--SEVLIIN 146
                 689*****************976..6665554005679*****998844222334445699*******9999988776333688999986..7777777 PP

                 EE CS
         GBP 113 ss 114
                   
  CCE28962.1 147 IW 148
                 54 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.7e-09     5e-06       1      31 [.      53      83 ..      53     132 .. 0.80
   2 ?   -3.0   0.0       2.2   6.7e+03      90     109 ..     450     469 ..     422     476 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.7e-09
                EEEEEBTTTTHHHHHHHHHTS--S---SSS- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnpt 31
                i v+GsqS GKS++ln+L g ++ +++++  
  CCE28962.1 53 ISVFGSQSTGKSTLLNNLFGTEFSVMSETER 83
                78*********************99988654 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.2
                 -EEEEEEETTS-SEEEEE-- CS
   Dynamin_N  90 villkilsllvkgltlvDlP 109
                   +l+i++   +gl++ DlP
  CCE28962.1 450 KKTLEIFETEAQGLVIQDLP 469
                 44678888888899999988 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     1e-07    0.0003       2      72 ..      53     130 ..      52     173 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1e-07
                 EEEEESTTSSHHHHHHHHHTS...TEEESSSTTSSSSEEEEEEE.......ETTEEEEEEECGGCSSHHHHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge...kaivsdkpgtTrdinegrvk.......lkgkeielvDtpGliegaseekglgkafla 72 
                 + ++G   +GKStL+n l+g+   +   +++ +tT+ i   + k       +  ++i ++D+ G  +   +e+g+ ++f++
  CCE28962.1  53 ISVFGSQSTGKSTLLNNLFGTefsVMSETERRQTTKGIWMSKNKrkesagaKMADNILVMDVEG-TD--GRERGEDQDFER 130
                 6899****************8432334466678999887776664444443123569*******.65..233344444443 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   9.9e-07     0.003       2      39 ..      53      90 ..      52     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 9.9e-07
      AAA_28  2 ivitGgestGKTtlleaLaargypvvpEaareileekl 39
                i ++G +stGK+tll++L  ++++v+ E+ r+ ++++ 
  CCE28962.1 53 ISVFGSQSTGKSTLLNNLFGTEFSVMSETERRQTTKGI 90
                6789************************9998877665 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1     2e-05     0.061       2      71 ..      47     116 ..      46     122 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2e-05
                 EEEEEEE.EEEBTTSSCCCCCCTTSSSS------------------S-E.EEEEEEEETTCEEEEEEEE--- CS
      Septin   2 gieftlm.vvGesglGkttlintlfetdlieeekleeasekkkktveik.kkkvvieedgvklnltviDtpg 71 
                 g+++ l+ v G++++Gk+tl+n lf t+    +++e++  +++k + ++ +k+++  + ++  n+ v+D +g
  CCE28962.1  47 GFNYHLIsVFGSQSTGKSTLLNNLFGTEFSVMSETERR--QTTKGIWMSkNKRKESAGAKMADNILVMDVEG 116
                 6666666378*****************99887644433..22222222213333444444444666667665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      655  (0.036533); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.34s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 5565.15
//
Query:       CCE28963.1  [L=323]
Description: probable 35 kDa ribonuclease H [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-47  159.5   0.0    1.1e-46  159.3   0.0    1.1  1  RNase_HII  Ribonuclease HII


Domain annotation for each model (and alignments):
>> RNase_HII  Ribonuclease HII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.3   0.0   5.9e-51   1.1e-46       1     197 [.      54     272 ..      54     273 .. 0.87

  Alignments for each domain:
  == domain 1  score: 159.3 bits;  conditional E-value: 5.9e-51
                 EEEEEE-TT-SBS-EEEEEEEECGHHHH.HHHC.TTGTTGTTS-HHHHHHHHHHHH..............SEEEEEEE-HHHHH.HHTTTS-HHHHHHH CS
   RNase_HII   1 iGiDEaGrGpvlGplvvaavavekeree.elkk.lgvkDSKkLskqkreeLaklik..............kkiekrklvaeeikyaseneinlneikaa 83 
                 +G+DEaGrGpvlGp+v+ +++++    +  l++   ++DSK L++  r+ L k ++              ++ ++r++ a++++      +nln ++ +
  CCE28963.1  54 LGVDEAGRGPVLGPMVYGVFYLPLPLSDpLLREtHHFDDSKVLTPAVRSSLMKTLCtpgsdlhsscgwatTSLSARDIGANMLR---PSPYNLNAQAMD 149
                 6*********************97766636665257*****************************8877777777777777777...579********* PP

                 HHHHHHHHHHHTCEECCECCCE--SSHHHHHHHHHHHHC.CEEEEETTGGGT-HHHHHHHHHHHHHHHHHHHHH......HHHCSH.--TTSSTTSHHH CS
   RNase_HII  84 ltlaviklleklgvkvdeilvdgvttpeslkkkleqiik.ikvtvekkadekyllvaaASiiAkverdeelell......krkpgtldkgsGyasdekt 175
                 +t+++i+ +   gv+++ei+vd++++p+ ++ kle +++ +k+tv+kkad++y++v+aAS++Akv+rd  le+l      + + g+ d+gsGy+sd++ 
  CCE28963.1 150 TTIELIRGVFDRGVNIQEIYVDTIGQPATYQAKLERVFPtTKITVAKKADSLYACVSAASVCAKVTRDAALEQLylargiSSASGDADWGSGYPSDARC 248
                 ********************************************************************9998762222223445589************ PP

                 HHHHHHHHHH...S--TTB-TTSHH CS
   RNase_HII 176 rallkkgats...klpdivrlsfkt 197
                  +++k+++ +   + p+  r+s+ t
  CCE28963.1 249 VNWMKRNMHPvfgWGPE-CRFSWGT 272
                 *********98855554.5888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2425.50
//
Query:       CCE28964.1  [L=652]
Description: related to centromere associated protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-34  118.7   4.0    2.9e-34  118.7   4.0    3.9  3  Mif2_N       Kinetochore CENP-C fungal homologue, Mif2, N-ter
    2.2e-30  104.7   0.1    3.5e-30  104.0   0.1    1.3  1  CENP-C_C     Mif2/CENP-C like
    9.9e-05   22.0   0.0    0.00021   20.9   0.0    1.6  1  Cupin_2      Cupin domain
  ------ inclusion threshold ------
      0.031   13.9   0.1       0.06   13.0   0.1    1.4  1  Cupin_1      Cupin
      0.069   12.8   0.0       0.26   11.0   0.0    1.9  1  Cupin_3      Protein of unknown function (DUF861)
       0.13   12.3   0.3       0.84    9.6   0.0    2.2  2  Lactamase_B  Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Mif2_N  Kinetochore CENP-C fungal homologue, Mif2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   4.0   9.6e-38   2.9e-34       1     135 []      15     140 ..      15     140 .. 0.89
   2 ?  -16.6  22.8         6   1.8e+04      66     122 ..     193     296 ..     142     385 .. 0.52
   3 ?    0.4   0.6      0.34     1e+03      36      67 ..     365     399 ..     362     431 .. 0.53

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 9.6e-38
      Mif2_N   1 ysnvGkaGRkTGvtlkdtgvrDehGlepidglFSsPeksekengeeeeeeededesgeedmdleessgpepadllsgrressrlplprarSPaktslks 99 
                 ++++G++GRkTGv+l+d+g+rDehG++p+d++FS P++     + +++e+e++d++g+ +m++ +s gp+p++ll++r+ s  lplp++rSP+kt+++s
  CCE28964.1  15 FHQLGVRGRKTGVVLQDRGERDEHGMQPLDSIFS-PQEA----KPTNREDESSDDTGSGEMEIASSDGPGPQTLLKNRH-SIPLPLPKSRSPVKTHMNS 107
                 579******************************6.6666....34555566778999*********************8.******************* PP

      Mif2_N 100 parrnsslaresqeerpsssPsraasq....ktvkrrldf 135
                 parr+++l+       + ssPsr+  +     tv+r+ldf
  CCE28964.1 108 PARRSRHLE-------NLSSPSRSGFTddrdVTVTRKLDF 140
                 *********.......78888887666677799******8 PP

  == domain 2  score: -16.6 bits;  conditional E-value: 6
      Mif2_N  66 s......................................sgpepadllsgrr.......essrlplprarSPaktslksparrnssla...resqeerp 116
                 s                                       +  p+d+ ++         +s+ lp+ ++  P+ ++ +   rr +s +   +e+  ++ 
  CCE28964.1 193 SdlvhegmdmfdgmrsdnftgtgfdspaagnarppaagkIAYSPQDVTQKSPayppsltNSPALPPLKESRPVPSTHET-TRRRPSWEatrAEQGVSED 290
                 3555555666655666666555555555555544444443333333333332222222233333333333333333322.2222222222222222233 PP

      Mif2_N 117 sssPsr 122
                 +++Psr
  CCE28964.1 291 EEQPSR 296
                 333333 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.34
      Mif2_N  36 Peksekenge...eeeeeededesgeedmdleess 67 
                 P+kse++      ++e++ede e  e+ m+++ + 
  CCE28964.1 365 PRKSEQRPPPrkrRDEDQEDEGEGDESFMEIQRGP 399
                 66663333330003333344444445779998873 PP

>> CENP-C_C  Mif2/CENP-C like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.1   1.2e-33   3.5e-30       1      85 []     552     636 ..     552     636 .. 0.99

  Alignments for each domain:
  == domain 1  score: 104.0 bits;  conditional E-value: 1.2e-33
                 -EEEEE--TTS-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEEE CS
    CENP-C_C   1 fklaklldkkflasGilkLppgaeKkkknskkatlvFyViqGrvevtvsktsfvigkgsvFqvPagneysieNklnkeaklfFvq 85 
                 f++ak+l+ +f+++G+++Lpp+  K++kns+k+++vF+ ++G+v+v +++ +f+i+ g+++ vP+gn+ysi N+++  a++fF+q
  CCE28964.1 552 FRFAKTLTLPFMGAGVVDLPPDSMKRPKNSRKMHMVFFLHYGKVQVVINGAQFRISAGGTWFVPRGNYYSIINDYDVPARIFFAQ 636
                 8**********************************************************************************98 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   7.2e-08   0.00021       2      68 ..     567     633 ..     566     635 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.2e-08
                 EEEEETTE.EEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEE CS
     Cupin_2   2 lvelppGe.sapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparll 68 
                 +v lpp   + p  + + +  +f+   G++ + ++g +++++aG ++++p+g    ++N+ d par++
  CCE28964.1 567 VVDLPPDSmKRPKNSRKMH-MVFFLHYGKVQVVINGAQFRISAGGTWFVPRGNYYSIINDYDVPARIF 633
                 6788888866666667777.99*******************************************986 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     2e-05      0.06      35     112 ..     565     635 ..     553     645 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2e-05
                 EEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEEEE CS
     Cupin_1  35 aarvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepavaivv 112
                 a +vdl p ++  P  + + + +++   G++   +v++g      + ++++G ++ vP+g  + ++n+ d pa ++++
  CCE28964.1 565 AGVVDLPPDSMKRPKNSRKMHMVFFLHYGKVQ--VVINGA-----QFRISAGGTWFVPRGNYYSIINDYDVPARIFFA 635
                 5578899***********************99..677775.....678***************************997 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.6e-05      0.26      30      59 ..     589     617 ..     578     627 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.6e-05
                 EEEECEEEEEETTTEEEEEETTEEEEE-TT CS
     Cupin_3  30 yileGevkvtpeggetvelraGDlvvlpkg 59 
                 ++  G+v+v+  +g++++++aG+ +++p g
  CCE28964.1 589 FLHYGKVQVVI-NGAQFRISAGGTWFVPRG 617
                 3345*******.****************98 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.29   8.5e+02      74     126 ..     353     401 ..     332     406 .. 0.56
   2 ?    9.6   0.0   0.00028      0.84      83     169 ..     472     557 ..     456     584 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.29
                  CCEHHHHCCHCHHHHHHHHHCCHH..TTCHCGCCEEEEETTTEECCCTEEEEEHE CS
  Lactamase_B  74 avaeeapalfmeeaddaasrkgll..lagvsadkpdvdeeeldgnaggrralyvt 126
                   ++ + + ++++ ++ +         +++ ++d +++de e+d+  +++++++++
   CCE28964.1 353 TEPTVVKRGRGRPRKSE------QrpPPRKRRDEDQEDEGEGDESFMEIQRGPPM 401
                  33333333333333222......23356677777777777777777766666555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00028
                  HCHHHHHHHHHCCHH.TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE CS
  Lactamase_B  83 fmeeaddaasrkgll.lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaev 169
                  + ++  + a +k+++ +a + +   +++e e  +++g+++++++ +   + ++   v+   ++++++ Da+ ++++++ ++  r+a++
   CCE28964.1 472 RAPHSRTRAKAKQIIhDAVEEDEERETWETEVGEIVGDIVLWEPQHELYPPADEDEVRVTQDRLAIAADAIEVRDIPDASF--RFAKT 557
                  44444444444444456677778888****************************************************999..55544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 4281.62
//
Query:       CCE28965.1  [L=256]
Description: uncharacterized protein CPUR_02655 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0001   22.2   8.6        1.9    8.5   0.0    4.4  4  Big_1     Bacterial Ig-like domain (group 1)
     0.0044   17.1   0.0        7.3    6.8   0.0    3.1  3  DUF4761   Domain of unknown function (DUF4761)


Domain annotation for each model (and alignments):
>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.023   2.1e+02      36      51 ..      19      36 ..       8      46 .. 0.73
   2 !    8.1   0.0    0.0003       2.7      22      57 ..      60      97 ..      56     101 .. 0.77
   3 !    8.5   0.0   0.00022       1.9      14      49 ..     112     151 ..     110     155 .. 0.87
   4 !    4.5   1.5    0.0039        35      16      44 ..     176     204 ..     172     216 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.023
       Big_1 36 s..assgtTdanGkatvt 51
                +  ++ g Td++G+ + +
  CCE28965.1 19 TdcPAAGLTDSQGRSSCN 36
                2478999******98766 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0003
       Big_1 22 agatVtfsvsggals..assgtTdanGkatvtltstka 57
                +g ++  + ++ga+s  ++ g Td++G+++ +  +++a
  CCE28965.1 60 SGNPIISNPTSGAASacPAAGLTDSQGRYSCNPAHKQA 97
                46666677777777779***********9977666665 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00022
       Big_1  14 kDangnpvagatVtfsvsg..gals...assgtTdanGkat 49 
                  D ng+pv   + ++ ++g  +  +   ++ g Td++G+++
  CCE28965.1 112 SDTNGKPVISNPTSVVAPGaaQP-TsacPAPGFTDSKGRYS 151
                 69*****************8444.459***********987 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.0039
       Big_1  16 angnpvagatVtfsvsggalsassgtTda 44 
                 a+g+pv +++ + ++ +g++ ++s+ T++
  CCE28965.1 176 ADGQPVMNQPGSTETGSGSNQPASTETGS 204
                 79******************999988875 PP

>> DUF4761  Domain of unknown function (DUF4761)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.027   2.5e+02      17      55 ..      27      65 ..      17      74 .. 0.82
   2 !    4.7   0.0    0.0037        33      16      55 ..      81     120 ..      69     132 .. 0.82
   3 !    6.8   0.0   0.00081       7.3      18      64 ..     145     191 ..     138     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.027
     DUF4761 17 srssiryslsethatpdghavkqigehtwliekagivvh 55
                + s+ r s   +h   +g   kq     +l + +g  + 
  CCE28965.1 27 TDSQGRSSCNPAHQQAEGRQCKQFDTCHFLCDTSGNPII 65
                56888999999*************999999999886665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0037
     DUF4761  16 asrssiryslsethatpdghavkqigehtwliekagivvh 55 
                  + s+ rys   +h   +g   kq     +l +  g  v 
  CCE28965.1  81 LTDSQGRYSCNPAHKQAEGRQCKQFDACYFLSDTNGKPVI 120
                 467899******************9988888877776555 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.00081
     DUF4761  18 rssiryslsethatpdghavkqigehtwliekagivvhkcprnpltg 64 
                  s+ rys   +h  p+g+  k+i    +l    g  v + p    tg
  CCE28965.1 145 DSKGRYSCNPAHKYPEGQQCKEIDGCLFLCGADGQPVMNQPGSTETG 191
                 5889*******************999999988888888887776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1822.68
//
Query:       CCE28966.1  [L=182]
Description: uncharacterized protein CPUR_02657 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0022   18.6   0.2     0.0051   17.5   0.2    1.6  1  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
  ------ inclusion threshold ------
      0.074   12.9   0.1      0.095   12.5   0.1    1.2  1  Pectate_lyase_3  Pectate lyase superfamily protein


Domain annotation for each model (and alignments):
>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   5.7e-07    0.0051      11      76 ..      47     112 ..      38     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.7e-07
                      TTTE.EEEECTSSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEE....ECCESSEEEEEETTTTEEEEEC CS
  RicinB_lectin_2  11 gdgy.ytiknvasgkvLdvaggstanganvqqwtcsgaanqqWrl....edtgdgtyrivnkasgkvLdva 76 
                      ++g+ y+++ ++sg vL + g  ++    +q++++ +a + qW+     +d++ g+ +++n+ +g +L  +
       CCE28966.1  47 QSGQrYVLVERQSGSVLIAVGEDAV----LQTCENISAFHSQWHWhwdcVDDD-GWMTLRNRITGNYLGAS 112
                      45544************77777777....566666688888888655535555.8**********999876 PP

>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.1e-05     0.095     105     173 ..       9      82 ..       5     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.1e-05
                      GG-SS---SSEEEES-EEEEEEEEEEES-SSEEE-SSS---T.T---SS--EEEE....ES-EEES-SS-SEEE CS
  Pectate_lyase_3 105 nlkiditavapgatgihwqtaqatslenvefemseasgtkhq.gifiengsggfl....ndlvfsglgdigiav 173
                      +l++  +++ +++tg++ +t++ +s++ +++ +++a+ +++q  +++e++sg++l    +d+v +  ++i +  
       CCE28966.1   9 KLRVEKSSAGSTTTGVDTPTSETDSISTMDIPNRDATLQSGQrYVLVERQSGSVLiavgEDAVLQTCENISAFH 82 
                      6777788888889************************855554999******9999999999999855554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1359.04
//
Query:       CCE28967.1  [L=162]
Description: uncharacterized protein CPUR_02658 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1221.06
//
Query:       CCE28968.1  [L=162]
Description: uncharacterized protein CPUR_02659 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1234.62
//
Query:       CCE28969.1  [L=265]
Description: related to YPC1-Alkaline Ceramidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-53  179.5   5.7      9e-53  179.4   5.7    1.0  1  Ceramidase  Ceramidase
  ------ inclusion threshold ------
       0.13   12.3   4.1       0.68   10.0   4.1    2.3  1  Leader_Trp  Trp-operon Leader Peptide


Domain annotation for each model (and alignments):
>> Ceramidase  Ceramidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4   5.7     1e-56     9e-53       1     245 [.      17     262 ..      17     265 .] 0.90

  Alignments for each domain:
  == domain 1  score: 179.4 bits;  conditional E-value: 1e-56
  Ceramidase   1 gyWgpvtStidwCEenYvvtpyiAEfvNTlsnllfillallgiynaakkkle.krfllaylglalvGlgSalFHaTLkyetQllDelsmiyatalvlya 98 
                 g W+p  S  ++CE++Y +t y AE++N+l+n++++++al  +y   +++l   r  ++ l+l++ G+gS+lFHaTL+      De+sm+ +t  +l a
  CCE28969.1  17 GAWSPSNSRANFCEQDYALTMYLAEMINSLTNIAYVYYALRFMYGPGSRGLLaPRWDAMSLSLLVLGIGSFLFHATLRQTLEFADEFSMLGLTWSMLQA 115
                 68******************************************9998887769********************************************* PP

  Ceramidase  99 vfsekksrstrvllgvlltalavvvtllylvlkepvlhqvafalltvlvllrsiyliekkvdksdeaakkevkklallgliifllgfliWnlDnlfCst 197
                 +f  ++sr t + ++ +l++  + ++++yl + + +++ +af l  + +++r+ yl++       +a++ +  + +  ++ + ++g+++Wn+D  fC +
  CCE28969.1 116 TFAIRTSRATYRAISAGLAVCFISFAVFYLQSPKIIYQVLAFVLSLLALIARTHYLYHGVQPALAPAQRGDWIARTWKATGLAVFGYVLWNIDLEFCAQ 214
                 *****9999999999999999999999999999999999999999999999*****9654444455666666666666778999*************** PP

  Ceramidase 198 ltrlrraiglplgvllelHgwWHiltgigayilivlleylrvekkgke 245
                 l+ +r+ +glp++ l+elHgwWH+lt++++  ++ ++  ++ e+++++
  CCE28969.1 215 LRAIRQMVGLPWAWLFELHGWWHVLTAMATGQFMDVVREMHQEERREK 262
                 ****************************99888877776666655554 PP

>> Leader_Trp  Trp-operon Leader Peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.1   7.6e-05      0.68       4      13 ..     229     238 ..     227     238 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 7.6e-05
  Leader_Trp   4 lfsLlgWWrt 13 
                 lf L+gWW++
  CCE28969.1 229 LFELHGWWHV 238
                 799******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1951.27
//
Query:       CCE28970.1  [L=263]
Description: related to YPC1-Alkaline Ceramidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-54  183.2   5.3    6.6e-54  183.1   5.3    1.0  1  Ceramidase  Ceramidase
  ------ inclusion threshold ------
      0.076   13.0   4.6       0.38   10.8   4.6    2.2  1  Leader_Trp  Trp-operon Leader Peptide
       0.58    9.9   9.3        1.8    8.3   2.8    2.3  2  UNC-93      Ion channel regulatory protein UNC-93


Domain annotation for each model (and alignments):
>> Ceramidase  Ceramidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.1   5.3   1.1e-57   6.6e-54       1     245 [.      15     260 ..      15     263 .] 0.90

  Alignments for each domain:
  == domain 1  score: 183.1 bits;  conditional E-value: 1.1e-57
  Ceramidase   1 gyWgpvtStidwCEenYvvtpyiAEfvNTlsnllfillallgiynaakkkle.krfllaylglalvGlgSalFHaTLkyetQllDelsmiyatalvlya 98 
                 g W+p  S  ++CE++Y +t y AE +N+lsn++++++al  +y   +++l   r   + l+l++ G+gS+lFHaTL+     +De+sm+ +t  +l a
  CCE28970.1  15 GAWSPSNSRANFCEQDYALTVYLAEAINALSNIAYVYYALRFMYGPGSRGLLsPRWDTMSLSLIVLGIGSFLFHATLRQTLEFVDEFSMLGMTWSMLQA 113
                 68******************************************9999888769********************************************* PP

  Ceramidase  99 vfsekksrstrvllgvlltalavvvtllylvlkepvlhqvafalltvlvllrsiyliekkvdksdeaakkevkklallgliifllgfliWnlDnlfCst 197
                  ++ ++s+ t + ++++l++  v +t++yl + + ++h +af +  +++++rs y+++       +a++ +  + +  ++ + +l+++iWn+D  +C +
  CCE28970.1 114 SVPIRTSPVTYRAVSTGLAICYVSFTAFYLSSPKIIYHVIAFVISLLVLIARSQYVCRWVQPVFAPAQRLDWIARIWKAMGLGVLAYVIWNIDLEYCAQ 212
                 *********************************************************6554333333333333444445556789************** PP

  Ceramidase 198 ltrlrraiglplgvllelHgwWHiltgigayilivlleylrvekkgke 245
                 l++lr+ +glp++ l+elHgwWHilt++++  ++ l+  +r e ++++
  CCE28970.1 213 LRELRQMVGLPWAWLFELHGWWHILTAMATGEAMDLVREMRQEAEREK 260
                 ****************************99988888888888777666 PP

>> Leader_Trp  Trp-operon Leader Peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.6   6.4e-05      0.38       4      13 ..     227     236 ..     225     236 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.4e-05
  Leader_Trp   4 lfsLlgWWrt 13 
                 lf L+gWW++
  CCE28970.1 227 LFELHGWWHI 236
                 799******8 PP

>> UNC-93  Ion channel regulatory protein UNC-93
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.5    0.0021        13      72     138 ..      44     115 ..      31     119 .. 0.84
   2 ?    8.3   2.8    0.0003       1.8      37      67 ..     125     155 ..     117     177 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0021
      UNC-93  72 igallyaifqlgFlllnkyylyissallGvgaallwtgqGsyLsenstretie.....rnssilwallkssl 138
                 ++ + y+ + l F++      ++s     ++ +l+  g Gs+L + + r+t e     ++ +++w++l++s+
  CCE28970.1  44 LSNIAYVYYALRFMYGPGSRGLLSPRWDTMSLSLIVLGIGSFLFHATLRQTLEfvdefSMLGMTWSMLQASV 115
                 66778888888888888888888888888999*******************9966666788999**999985 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0003
      UNC-93  37 kaGYyslaiiyavftvanlvapsvvdlltak 67 
                 +a  ++lai+y++ft++ l +p++++ + a 
  CCE28970.1 125 RAVSTGLAICYVSFTAFYLSSPKIIYHVIAF 155
                 556689******************9988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2008.94
//
Query:       CCE28971.1  [L=356]
Description: related to spore coat protein SP96 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        4.8    7.6   7.3         32    5.0   7.3    2.4  1  Lustrin_cystein  Lustrin, cysteine-rich repeated domain


Domain annotation for each model (and alignments):
>> Lustrin_cystein  Lustrin, cysteine-rich repeated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   7.3    0.0018        32       2      43 ..     307     353 ..     306     353 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0018
  Lustrin_cystein   2 CpsGeeplldesgqpvtCsps.....sssCPsgysChfssttessvC 43 
                      C+ G     ++s + + C+++       +C +g+ Ch+s ++++ +C
       CCE28971.1 307 CAPGTYSCSSDSRALQVCGADkawirMADCGPGQICHISKSNNTPYC 353
                      6666632333334448999998888899******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2576.48
//
Query:       CCE28972.1  [L=320]
Description: related to spore coat protein SP96 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.039   13.9   0.0      0.075   13.0   0.0    1.4  1  Glyco_hydro_61  Glycosyl hydrolase family 61


Domain annotation for each model (and alignments):
>> Glyco_hydro_61  Glycosyl hydrolase family 61
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.2e-06     0.075     125     177 ..     126     173 ..      98     189 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.2e-06
                     CEEEEE--TTB-SEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEESS-SB.- CS
  Glyco_hydro_61 125 aklsvtiPaslapGeYllRhEiiALhsagskggaQfYpsCaqleVtgsgtalp 177
                      ++++t+P++ ++G       ++A    +++g+ ++Y++Ca +++ g+g++l 
      CCE28972.1 126 PTFKFTVPSDTPSGP-----ALFAWTWFNQVGNRELYMNCASINIAGGGKKLR 173
                     577888888888885.....45688888999*****************99544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2344.91
//
Query:       CCE28973.1  [L=1855]
Description: probable kinesin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.5e-111  370.7   0.0   5.5e-111  370.7   0.0    1.8  2  Kinesin        Kinesin motor domain
    1.9e-48  165.0   0.1    1.2e-47  162.4   0.0    2.3  2  DUF3694        Kinesin protein
      2e-34  119.3  17.3      3e-30  105.7   0.3    3.9  3  Kinesin_assoc  Kinesin-associated
    1.4e-24   86.7   0.4    4.3e-24   85.1   0.0    2.1  2  Microtub_bd    Microtubule binding
    1.2e-06   28.8   0.4    4.6e-06   27.0   0.4    2.1  1  KIF1B          Kinesin protein 1B
    0.00017   21.8   0.2     0.0014   18.9   0.2    2.5  2  FHA            FHA domain
  ------ inclusion threshold ------
       0.02   15.4   0.0         11    6.6   0.0    2.6  2  PH             PH domain
       0.99    8.9  18.1        2.3    7.7  15.9    2.3  2  Exonuc_VII_L   Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.7   0.0  2.5e-114  5.5e-111       1     333 []      14     358 ..      14     358 .. 0.95
   2 ?   -6.2   4.5         8   1.8e+04      12      42 ..     787     817 ..     768     848 .. 0.44

  Alignments for each domain:
  == domain 1  score: 370.7 bits;  conditional E-value: 2.5e-114
                 EE-SSSHHHHTTTTEBCEEEEC...TCTCEEEEEEEEECTTSCEEEEESEEEETTS-.......HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHH CS
     Kinesin   1 RvRplnekekeeeeeeevevee...ekkeeekkskkenkeeeekkfkFdkvfdeeat.......qeevyeetakplvesvleGynatifaYGqtgsGKT 89 
                 RvRp+n++e ++ ++++ve+++   + ++ + +  k +k+   k+f+Fd+ +++ ++       q+++++++ +pl++++++Gyn +ifaYGqtgsGK+
  CCE28973.1  14 RVRPFNSREIDRGSKCIVEMKDnqtALSSPDGHGGKGAKDAGAKTFAFDRSYWSFNKddsnyagQSNLFDDLGAPLLDNAFQGYNNCIFAYGQTGSGKS 112
                 9*****************9998444445566677788888999*******99986666789999*********************************** PP

                 HHHTBCTTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHH CS
     Kinesin  90 yTmegkeeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekg 188
                 y+m+g   +e Giip++++e+F++i++ +++k+++++v+vsylEiYne+++DLL+++   +k +lk+re++++g  yv++l +  v s++e+ +l+++g
  CCE28973.1 113 YSMMGY-GKEVGIIPNICQEMFTRIDAIQQDKTTKCTVEVSYLEIYNERVRDLLNPT---TKGNLKVREHPSTG-PYVEDLAKLVVGSFKEIENLMDEG 206
                 *****8.899**********************************************9...4567********98.************************ PP

                 HHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTC.EEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHT.......CC CS
     Kinesin 189 eknrkvaetklneeSSRSHavftitleqknlkeete.ekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaek.......kk 279
                 +k r+va+t++ne+SSRSHavft++l+qk+ + et+ e  k++k++LvDLAGsEra++tg a+g rlkE+a+iN+SL++Lgrvi+aLa+        k 
  CCE28973.1 207 NKARTVAATNMNETSSRSHAVFTLMLTQKKYDVETKmEMEKVAKISLVDLAGSERATSTG-ATGARLKEGAEINRSLSTLGRVIAALADLstgnkkkKG 304
                 ********************************99996669********************.5899***********************99999999888 PP

                 TSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 280 skhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 ++ +pYRdS LT+lL+dsLgGns t+mi+ +sp++ n++etlstl++a+ ak+i
  CCE28973.1 305 ATQVPYRDSVLTWLLKDSLGGNSMTAMIAAISPADINYDETLSTLRYADSAKRI 358
                 99**************************************************87 PP

  == domain 2  score: -6.2 bits;  conditional E-value: 8
                 TTTEBCEEEECTCTCEEEEEEEEECTTSCEE CS
     Kinesin  12 eeeeeeveveeekkeeekkskkenkeeeekk 42 
                 + +e++ e++++ ++++++ +++ k+ e  +
  CCE28973.1 787 QLKEAQEEMQQQLEKQKEEFQEQLKRAEAAN 817
                 2222222222222222222222223333333 PP

>> DUF3694  Kinesin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.1   2.5e+03      14      33 ..     831     852 ..     816     998 .. 0.69
   2 !  162.4   0.0   5.3e-51   1.2e-47       2     153 ..    1227    1374 ..    1226    1375 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.1
     DUF3694  14 d..vFqLrqglqrrvvvtltqr 33 
                 +  +  L+q +qr++ ++ ++ 
  CCE28973.1 831 EsaLLELKQDMQRQLNLQRKRY 852
                 2357889999999988743333 PP

  == domain 2  score: 162.4 bits;  conditional E-value: 5.3e-51
     DUF3694    2 YvpVpvdpkkevd..vFqLrqglqrrvvvtltqrsedeLlwervrfppgrevrvgdvrlldlskgkskdseslsadlslkllseptveesadgtsev 96  
                  Y pV+v +++e+d  +FqL+qg+qrr+ ++++++s+d L+w +v     + vrvg+v l+d s+g+++d+ s+++++slkl+s+p ++e+ +gt+++
  CCE28973.1 1227 YEPVEVSQTSELDmgTFQLHQGIQRRIGISISHSSGDALPWGDV-----TAVRVGNVALVD-SAGRTPDMGSSEPPVSLKLASNPIFRENPNGTRNI 1317
                  9***********667*****************************.....************.9********************************** PP

     DUF3694   97 kieasWdsslhdsllLnrvTkdgervyltvavdlvseeveepvvfrkeicvriygrd 153 
                  ++ a+Wdsslh+sllL+rvT+d++rv++t+ +++ se+++ep++f+ ++cv+i++r+
  CCE28973.1 1318 TMYAQWDSSLHNSLLLDRVTADKYRVQMTIYWEISSEKLAEPMKFTQKVCVQILSRS 1374
                  ******************************************************996 PP

>> Kinesin_assoc  Kinesin-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.3   2.1e-07   0.00047       1      26 [.     362     387 ..     362     393 .. 0.92
   2 !  105.7   0.3   1.3e-33     3e-30      80     180 ..     415     512 ..     395     513 .. 0.89
   3 ?   -0.7   5.7      0.61   1.4e+03      15     122 ..     715     829 ..     709     849 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.1e-07
  Kinesin_assoc   1 avinedPnaklvrelkeeverlkdll 26 
                    av+ned na+++relkee++ l+  l
     CCE28973.1 362 AVVNEDANARMIRELKEELALLRSKL 387
                    8*********************9876 PP

  == domain 2  score: 105.7 bits;  conditional E-value: 1.3e-33
  Kinesin_assoc  80 aesvssleerivfspaseeaierlketekiiaelnetWeeklrkteairlereallaelGvairedGGtlGvfsPkktPhlvnlnedPlmseClly 175
                      ++++++ ++    ++ +  e+l+++ek++++ln+tWe+kl+kte+i+ erea l+elG++i++  G +G+ +Pkk Phlvnl +dPl++eCl+y
     CCE28973.1 415 IVTITTSDGTV-KKVSKADIAEQLNQSEKLLSDLNQTWEQKLQKTEEIHKEREAALEELGISIEK--GFIGLSTPKKMPHLVNLSDDPLLAECLVY 507
                    44566666666.566788999******************************************87..6**************************** PP

  Kinesin_assoc 176 yikdG 180
                    ++k+G
     CCE28973.1 508 NLKPG 512
                    ***99 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.61
  Kinesin_assoc  15 lkeeverlkdlllaqglediidse.aeplkeglvllaseraknlsavtaavaglsps...s.slsalssraesvssleeriv..fspaseeaierl 103
                    l eev+r +   +  g ed  d+e +++l+ ++++l++ + +n+s  ta ++  +p+   +  +  ++++++++ + +e+++    + +ee  e+l
     CCE28973.1 715 LFEEVQRARAERVIGGREDGDDTEsVTSLSVREKYLSTGTIDNFSLDTALTMPSTPKqvePhQQPQQQQQQQQLKEAQEEMQqqLEKQKEEFQEQL 810
                    678999999999999998888887677788888888777777777665555444454333322333333344455555544311367789999999 PP

  Kinesin_assoc 104 ketekiiaelnetWeeklr 122
                    k +e    ++ e   ek +
     CCE28973.1 811 KRAEAANVQVEEISKEKAK 829
                    9999888888888877765 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0   1.9e-27   4.3e-24      20     149 .]       7     165 ..       5     165 .. 0.86
   2 ?   -3.7   0.2       4.4   9.9e+03     106     138 ..     216     248 ..     206     249 .. 0.71

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 1.9e-27
                  TB-EEEEEEECCCS-T......EEEETTT..................TTTEEEE-SEEEECTT.......HCCCCCCCC.HHHHHHHHTT--EEEEEE CS
  Microtub_bd  20 GniRvfarvrpelesek.....akikfpe...............eekkkkkefsFdrvfeses.......eqeevfeei.sqlvqsaldgynvcifay 89 
                  Gni v +rvrp +++e      + +++++                ++  +k+f Fdr + s +        q+++f+++ + l++ a++gyn cifay
   CCE28973.1   7 GNIKVVVRVRPFNSREIdrgskCIVEMKDnqtalsspdghggkgAKDAGAKTFAFDRSYWSFNkddsnyaGQSNLFDDLgAPLLDNAFQGYNNCIFAY 104
                  9***********99988899986666664456777888999999778889999999976444433366678999****9456**************** PP

                  ES................ST-HCHHHHHHHHHHCCTS.CCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  90 gqTGsGKtyTmegeeeeagmipraveeifetiselke.kgwkyeielqfveiynekvqDlL 149
                  gqTGsGK+y m+g  +e g ip++ +e+f+ i   ++ k+ k ++e++++eiyne+v+DlL
   CCE28973.1 105 GQTGSGKSYSMMGYGKEVGIIPNICQEMFTRIDAIQQdKTTKCTVEVSYLEIYNERVRDLL 165
                  ******************************99876554999*******************8 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.4
                  ..ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEE CS
  Microtub_bd 106 eagmipraveeifetiselkekgwkyeielqfv 138
                  + + + +  +++f+ + ++k++  + ++e++ v
   CCE28973.1 216 NMNETSSRSHAVFTLMLTQKKYDVETKMEMEKV 248
                  445555667889999999988888888888755 PP

>> KIF1B  Kinesin protein 1B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.4   2.1e-09   4.6e-06       1      48 [.     980    1021 ..     980    1021 .. 0.98

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.1e-09
       KIF1B    1 LenRlvdMRemYeeskegesrsh.svdtseslsgsDPFyEs.qenhsLiG 48  
                  L +R+ +MR+m+++ +++++ +h s+d        +PF E  +++++L+G
  CCE28973.1  980 LHDRVRQMRQMHQYLDQPDYAQHlSLD--------NPFVENcMPSYTLVG 1021
                  789************************........**************9 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0         1   2.2e+03      16      36 ..     219     239 ..     209     256 .. 0.83
   2 !   18.9   0.2   6.3e-07    0.0014       7      69 .]     525     584 ..     514     584 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1
                 TTSTTTEEEEEEETTCEEEEE CS
         FHA  16 psiSrkHalikfdkgsgkvyl 36 
                 ++ Sr Ha+++ + +++k+ +
  CCE28973.1 219 ETSSRSHAVFTLMLTQKKYDV 239
                 678*******99888666665 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 6.3e-07
                 TTSSEETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA   7 sdcdivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 ++++i+l+  +i   H+ +++++ +g+v ++       ++vNg+ri+   p +L+sg ++ lG
  CCE28973.1 525 HQANIRLNGTRILHDHCKFENNSADGNVIVVP-SEGASVMVNGKRITE--PKQLHSGYRVILG 584
                 67899***************************.689**********98..*******999887 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0049        11       2      57 ..    1679    1729 ..    1678    1757 .. 0.87
   2 ?    5.7   0.0     0.009        20      71     100 ..    1805    1830 ..    1787    1833 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0049
                  EEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEE CS
          PH    2 vkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevve 57  
                   k G+Ll   ++   +w kr++ L++  l ++++     d +    +sl+n ++ +
  CCE28973.1 1679 LKGGYLLVPNNDST-RWVKRFVELRRPYLHIHSAT----DGDEVALVSLRNSRIDS 1729
                  67899998888888.*******************9....99999999999998876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.009
                  EEEESTSSSTEEEEEEESSHHHHHHHHHHH CS
          PH   71 elriverngsrtyllqasseeerkeWikai 100 
                  ++  +  + ++t+l++a se ++ +Wi  i
  CCE28973.1 1805 AI--Y--GTDNTWLFAARSEKDKMDWIFRI 1830
                  44..2..3369***************9666 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.18   4.1e+02     185     217 ..     433     465 ..     326     581 .. 0.66
   2 ?    7.7  15.9     0.001       2.3     129     235 ..     768     886 ..     761     931 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.18
  Exonuc_VII_L 185 lerkrqrldeleerleralkkqlkkkrerleel 217
                   ++++ ++ ++l ++l+++ +++l+k +e  +e 
    CCE28973.1 433 IAEQLNQSEKLLSDLNQTWEQKLQKTEEIHKER 465
                   222222222222222222222222222222111 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.001
  Exonuc_VII_L 129 pTPtaaAelvvpdkaeleeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlk... 222
                   +TP ++     p++++ ++ql+e++++++++++++ ee +++l++++ +   + e +++++ +++++  +l++ +++ql+ +r+r+ee  +++    
    CCE28973.1 768 STPKQVEPHQQPQQQQQQQQLKEAQEEMQQQLEKQKEEFQEQLKRAEAANV-QVEEISKEKAKMESALLELKQDMQRQLNLQRKRYEEKLDKMDplk 863
                   688888888889999999999999999999999999999999998865443.345677777888888888888888888888888877777773355 PP

  Exonuc_VII_L 223 ..........ekleekkerlkkl 235
                             e+++++k+ +k +
    CCE28973.1 864 rpkanprltdEEMDRAKKAIKVW 886
                   55555433333333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1855 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2949  (0.164482); expected 358.6 (0.02)
Passed bias filter:                      958  (0.053433); expected 358.6 (0.02)
Passed Vit filter:                       190  (0.0105974); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.68u 0.31s 00:00:01.99 Elapsed: 00:00:00.52
# Mc/sec: 10824.76
//
Query:       CCE28974.1  [L=129]
Description: uncharacterized protein CPUR_02665 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-28   98.8   0.0    2.2e-28   98.6   0.0    1.0  1  Ten1         Telomere capping, CST complex subunit
    0.00024   20.8   0.0     0.0003   20.5   0.0    1.2  1  Ten1_2       Telomere-capping, CST complex subunit
  ------ inclusion threshold ------
      0.027   14.8   0.0      0.046   14.1   0.0    1.4  1  Rep_fac-A_3  Replication factor A protein 3


Domain annotation for each model (and alignments):
>> Ten1  Telomere capping, CST complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.0   3.8e-32   2.2e-28       6     119 ..       3     108 ..       1     110 [. 0.95

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 3.8e-32
                 S.GGGHCCH-CCGGGCTTCTEEEEEEEEEEEEECCCTEEEEEECCEE.......EEEE-TTTTTTS.GGGGSTT-EEEEEEEEECTTE......EEEEE CS
        Ten1   6 lgplpltllflselaslsegkkvRfLgcvseYkvetghLtlehnyprkksapssvsvdinavLesvkaeelqvGawvnvvGyvreeksskrsvyveavm 104
                  gp p++l+fls++++ ++g kvRfLgcv++Y++ t+++ l h ypr   ++  v+vd  +vLe++k   + vG+wvnvvGyv  +++      v+a+m
  CCE28974.1   3 RGPPPSRLCFLSQVPAQNTGVKVRFLGCVTSYDTGTATVQLGHLYPR--GTNVLVAVDLRLVLETMKPGIMTVGEWVNVVGYVVDRRR------VQALM 93 
                 6899*******************************************..67778*****************************99996......***** PP

                 EEE-TCGGHHHHHHH CS
        Ten1 105 ifsagaveLgeyerv 119
                 ++s g ++++eyer+
  CCE28974.1  94 MWSTGPLDVAEYERA 108
                 *************96 PP

>> Ten1_2  Telomere-capping, CST complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   5.1e-08    0.0003       3     109 ..       6     110 ..       4     114 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.1e-08
      Ten1_2   3 eagvivlldElssgslkegssvRtlGrLksydvatsratltakeeskqaelkvetdl...vepfea...rlgslyqviGelekekedgeivlrARvlrc 95 
                 +++++++l+ +  ++ + g+ vR lG ++syd+ t++++l  +   +++++ v +dl   +e ++     +g  + v+G++  +       ++A  +  
  CCE28974.1   6 PPSRLCFLSQV--PAQNTGVKVRFLGCVTSYDTGTATVQL-GHLYPRGTNVLVAVDLrlvLETMKPgimTVGEWVNVVGYVVDR-----RRVQALMMWS 96 
                 66777777774..55789**********************.7777788888888887775555555888999999999998877.....4566666666 PP

      Ten1_2  96 vdgldldlyekale 109
                 +  ld++ ye+a e
  CCE28974.1  97 TGPLDVAEYERATE 110
                 66666666666655 PP

>> Rep_fac-A_3  Replication factor A protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   7.7e-06     0.046      15      92 ..      19     106 ..      12     112 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.7e-06
                  GGTTSEEEEEEEEEEETTSSEEEEE-TTS-E............EEEEESS--SS---SEEEEEEEE-TTS-EEEEEEEE---.---HHHHH CS
  Rep_fac-A_3  15 qfvgrtvrivgkvesvpsgktlilqstdggs............vtvrlsedstleiskwvEvvGkvsddlgirldsvvefge.dlDldlyn 92 
                  q++g +vr++g v+s+    t+++q +                + ++ +++  + +++wv vvG v d   ++++    +++  lD++ y+
   CCE28974.1  19 QNTGVKVRFLGCVTSY-DTGTATVQLGHLYPrgtnvlvavdlrLVLETMKPGIMTVGEWVNVVGYVVDRRRVQALM--MWSTgPLDVAEYE 106
                  788889**********.888999999966668899****998888899999999*************988776554..4444366666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1000.72
//
Query:       CCE28975.1  [L=117]
Description: uncharacterized protein CPUR_02666 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-18   67.0   0.0    1.4e-18   66.7   0.0    1.1  1  DUF952    Protein of unknown function (DUF952)


Domain annotation for each model (and alignments):
>> DUF952  Protein of unknown function (DUF952)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   7.6e-23   1.4e-18      19      88 ..      29      93 ..      16      95 .. 0.90

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 7.6e-23
                -HHHHHHTSEE-EEHHHHHHHHHHHSTT--SEEEEEEESGGGTTTEEEEEGGGGSEEEEESS-EEGGGEE CS
      DUF952 19 ssldakdGFIHlStaeqvpetaarffagqedlvllkidasklaaavkweaseggelfPHlYgplplkaVv 88
                s  d+kdGF+HlSta+qvp+t ++ff  ++ l++ k+++++l++ +kwe   g  ++PHlYg l  ++Vv
  CCE28975.1 29 SLRDQKDGFVHLSTAQQVPSTCDAFFGTASTLWVFKLTLDRLSESMKWE---G--GYPHLYGTLRKEDVV 93
                55699***********************888******************...4..6************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 872.96
//
Query:       CCE28976.1  [L=604]
Description: related to leukotriene-A4 hydrolase long isoform [bifunctional aminopeptidase and epoxide hydrolase en [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-43  148.4   0.1    3.4e-43  147.7   0.1    1.2  1  Peptidase_M1     Peptidase family M1 domain
    1.3e-36  125.1   0.0    2.2e-36  124.3   0.0    1.4  1  Leuk-A4-hydro_C  Leukotriene A4 hydrolase, C-terminal
      1e-26   94.2   0.1    1.7e-26   93.6   0.1    1.3  1  Peptidase_M1_N   Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
       0.28   11.6   1.8        4.9    7.6   1.8    2.5  1  Peptidase_M61    M61 glycyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   0.1   7.6e-47   3.4e-43       1     205 [.     229     427 ..     229     445 .. 0.87

  Alignments for each domain:
  == domain 1  score: 147.7 bits;  conditional E-value: 7.6e-47
                   HHHHHHHHHHHHHHHHHTS--SSSEEEEEEE.SSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHH CS
  Peptidase_M1   1 yalevtkkllefleeyfkvpYplpkldlval.pdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnE 96 
                   ++le ++  ++ ++e++ +pY++ ++++++l p+f++g+MEn+  ++++++ +  d         r++++viaHEl+H+W+GnlV++++W+++wLnE
    CCE28976.1 229 WELERDMDKFMDVAEKLIFPYKWGEYNVLVLpPSFPYGGMENPIYTFATPTIISGD---------RQNVDVIAHELSHSWSGNLVSNASWEHFWLNE 316
                   789999999**********************99***********************.........8999**************************** PP

                   HHHHHHHHHHHHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSSG..G-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHCTT CS
  Peptidase_M1  97 Gfatyleylildklepewevseqllleeveealsedaldeshpitq..evekpseidevFdsiaYeKGasllrmlekllgeevFqkglksYlkefky 191
                   G+++yle++il ++++e+e+  + ++     + + +  +++h++t+    +k+ ++++v++ +aYeKG+ +l +l +l+g e F+k++ +Y+++ + 
    CCE28976.1 317 GWTVYLERRILAAIHGEAEFDFSSIIGWKGLEDAVELFGKDHEYTKliISHKNVDPEDVYSIVAYEKGFHFLYYLDRLVGREAFDKFIPHYFAKWSG 413
                   ****************8884444444555555666667777777742244678899***************************************** PP

                   EEE-HHHHHHHHHH CS
  Peptidase_M1 192 knaetedlwdalee 205
                   k++++ ++ d++ +
    CCE28976.1 414 KSLDSFEFRDTFLD 427
                   ***99999888766 PP

>> Leuk-A4-hydro_C  Leukotriene A4 hydrolase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0     5e-40   2.2e-36       1     113 []     491     602 ..     491     602 .. 0.99

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 5e-40
                      --HHHHHHHHHHHHTT-GGG-HHHHHHHHHHTIIIT---HHHHHHHHHHHHHTT-GGGHHHHHHHTTT---HHHHHHHHHHHHTT-HHHHHHHH CS
  Leuk-A4-hydro_C   1 fssnqkvlfLekLlekekplpaekleaLdelYklseskNaeirlrwlqlalkakyeeavpevaeflgsqGrmkfvrplYraLnkvdrdlAketF 94 
                      f++nqk+ fL+k++e+  pl+ae+++ L+++Y+l +skN+e++++++++al a++ + v  vae+lgs+Grmkfvrpl+r Lnkv+r+lA etF
       CCE28976.1 491 FTANQKIAFLDKVQESG-PLSAERSQLLGKTYDLISSKNVELKSSYYRIALDAEDPTCVYGVAELLGSVGRMKFVRPLFRGLNKVNRALALETF 583
                      789************88.**************************************************************************** PP

                      HHHGGGS-HHHHHHHHHHT CS
  Leuk-A4-hydro_C  95 ektkdfyhpiarklvekdL 113
                      +k+kdfyhpi+r +vekdL
       CCE28976.1 584 AKNKDFYHPICRGMVEKDL 602
                      *****************98 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   0.1   3.7e-30   1.7e-26       3     186 .]      18     198 ..      12     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 93.6 bits;  conditional E-value: 3.7e-30
                     EEEEEEEEEETTTTEEEEEEEEEEEES..S-ECEEEEEESSEEEECEEEEECTTCTCEEEEEEEECTTTTC...EEEEECCEEETTCEEEEEEEE CS
  Peptidase_M1_N   3 ehYdldlkidlkektfkGsvtitlqlk..eatseivldakdlkiksvslsaevksesvkidfkieqkdeel...ltiklkeslqqtskytLeiey 92 
                     +h  +d+k+d+++k +kG++t +l+ +   +++e+vld++++++k v ++      s + +++++  ++ +   l++ +++   + + + + i+ 
      CCE28976.1  18 KHTTVDFKLDFEQKYLKGTATLQLESQtdRESKEVVLDTRFIDVKAVHVN------SADSKWELKPHTDPFgapLHVYIPTGAAKGDIIDVAIQL 106
                     577799*********************999**************555444......433344444444444445899999977755656666666 PP

                     EEE-BSSSSEEEEEEEEE.TSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTSEEEESSECCCEEEETTCEEEEEEEEEESBEGGG CS
  Peptidase_M1_N  93 egelndklaGlykstYtd.kgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkeetalSnmpeeeseklengqkiteFeqtpkmstYL 186
                     e+  + k+++l+  t  + +++k +++++q++a+ AR +fPC+D+P+vK+tf++++++  + ++ S+ p+ + ++    +k++ Feq++++++YL
      CCE28976.1 107 ET--TAKCTALQWLTPAQtSNKKHPYMFSQCQAINARAIFPCQDTPDVKSTFSFRLTSSLP-VVASGVPVGDHTPSVGVEKTYAFEQKVPIPSYL 198
                     66..********544444499****************************************.**************98888*************9 PP

>> Peptidase_M61  M61 glycyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.8    0.0011       4.9       3      53 ..     288     327 ..     286     335 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
                    HHHHHHHHHHTTBTTTB-BGGGSS---SS----STHHHHTHHHHHHHHHHH CS
  Peptidase_M61   3 lgllaHEyfHsWnvkrirPaelepfdyekenytellwvaEGlTsYygdlll 53 
                    ++++aHE+ HsW ++ +  a+ e             w+ EG+T Y++  +l
     CCE28976.1 288 VDVIAHELSHSWSGNLVSNASWE-----------HFWLNEGWTVYLERRIL 327
                    68999*******99776655544...........56777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 4029.99
//
Query:       CCE28977.1  [L=205]
Description: uncharacterized protein CPUR_02668 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1614.00
//
Query:       CCE28978.1  [L=108]
Description: uncharacterized protein CPUR_02669 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 858.58
//
Query:       CCE28979.1  [L=612]
Description: related to alpha-mannosidase IC (MNSIC) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.6e-167  556.9   0.0   4.2e-167  556.7   0.0    1.0  1  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  556.7   0.0  2.4e-171  4.2e-167       2     458 .]     132     610 ..     131     610 .. 0.97

  Alignments for each domain:
  == domain 1  score: 556.7 bits;  conditional E-value: 2.4e-171
                     HHHHHHHHHHHCTTSSEEETTTTEEE-SS.SS-CCHHHHHHHHHHCCHHHHHHHHHHHHHHC----S.SS.EEEHHHHHHHHHHHHHHHHHHH.S CS
  Glyco_hydro_47   2 fkhswegYkkyAwghDelrPlskkgrdtfgglgatlvDsLdtllimglkeefeeaveavekkidfdtsdskevsvFEttIRyLGGLlsaydlsek 96 
                     f   w++Y++yAwg+D l+P+s + +d+f+g++atlvDsLdtl+imgl++ef+eav av  +idf  s+s++v++FEt+IRyLGGLl+aydls  
      CCE28979.1 132 FIADWQNYRTYAWGRDALNPVSATAKDQFSGWAATLVDSLDTLWIMGLRDEFNEAVAAVG-RIDFGASTSRQVNIFETNIRYLGGLLAAYDLS-- 223
                     8889********************************************************.********************************.. PP

                     -HHHHHHHHHHHHHHHHGGGSSTTS---SEEETTT--EE-.STCGCEEEHHHHCSSHHHHHHHHHHHT-CHHHHHHHCCHHHHHCHCC.HHHTTB CS
  Glyco_hydro_47  97 kedvllekAveladrLlpAFdtpsglpvarvnlkkrkaskkerassesvlAelgslslEftrLsqlTgdkkYedlaervtkaleelqektklpgl 191
                     ++dvll+kAvel++ +++ F+tp ++pv  ++++ +k+++  + +++ v+A  g+lslE+trLsq+Tgd+kY+d+++rv+++++e+q+ktklpgl
      CCE28979.1 224 GRDVLLAKAVELGNFIYTGFNTPGNMPVDFIDFEVAKRGTGLEIEQSVVSASPGTLSLEMTRLSQVTGDPKYYDAVTRVMRVFHEQQNKTKLPGL 318
                     *********************************99998888777767789********************************************* PP

                     -BSEEETTT--EE.STEE-SSTTTHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHH.TEEE-TTT..--EEE-EECTT..CTS.EE-EEEGG CS
  Glyco_hydro_47 192 vpikidastgkfv.aekislgargDSyYEYllKqylllggeeeqyrkmyeealdaikkhllfrpskkkeddllfvgevtst..eegklspeidhL 283
                     +pi+ +++  +++ ++++slga++DS+YEYl+K+++llgg+e++y+ m e+ ++a+ +hl+frp+++ edd+l+ g+v+++  +++ l+pe  hL
      CCE28979.1 319 WPIMASMDRMDVSsRREFSLGAGADSLYEYLPKMHALLGGQEPMYEAMTESFMEAATTHLFFRPMVPLEDDILIAGNVDVSddGDTPLDPESGHL 413
                     ************9899*************************************************************9988777999******** PP

                     GGHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS.......S-ECTSSSSEEE-...............GGG--B-- CS
  Glyco_hydro_47 284 scFlgGllalgakllekeedlelAkkltegcvkayeatktglmPEifevkpces..aeecewneekkdealk..............riedrkyll 362
                     +cF+g+++alg++ll++++++e+++kl++gc+ ay+++++g+mPE++++ +ce   a++c+w+e k++ + k              + +d++y+l
      CCE28979.1 414 VCFIGATMALGGRLLDQPGHVETGAKLAKGCAYAYASFPSGVMPETYNMVSCEPrlASNCSWDEVKWERERKkrkqwkphlpkgftTAKDPRYIL 508
                     *****************************************************99999******999988889*************9******** PP

                     --HHHHHHHHHHHHH--THHHHHHHHHHHHHHHHCEETTEE--ECETTSS......S-EE-S-B-HHHHHTHHHHHHHHC-S-TTT-TTTEEE-T CS
  Glyco_hydro_47 363 RPEaiESlfylYritgdekyrevgwemfealekatktesgysaledVtke......epekeDemeSFwlaEtlKYlYLlFsdedvlsldeyVfnT 451
                     RPEaiES+f+lYritg+++y+e++w+mf+a++ka+++++g++a++dVt        e ++eD meSFwlaEtlKY YL+Fs++d+++lde+V+nT
      CCE28979.1 509 RPEAIESIFILYRITGKQEYQEIAWTMFQAVHKASQAKYGHAAISDVTIPfeestkEDNQEDYMESFWLAETLKYYYLIFSPPDLVDLDEFVLNT 603
                     ************************************************878888888899*********************************** PP

                     TS-EEE- CS
  Glyco_hydro_47 452 eAHplkr 458
                     eAHp++r
      CCE28979.1 604 EAHPFRR 610
                     *****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4676.13
//
Query:       CCE28980.1  [L=368]
Description: related to C6 transcription factor GliZ2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-06   27.6   7.8    5.4e-06   26.4   7.8    1.6  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   7.8     3e-10   5.4e-06       2      34 ..      29      59 ..      28      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3e-10
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfys 34
                aCd C+  Kv+C+++ P C++C++ n+ C  ys
  CCE28980.1 29 ACDACHASKVRCSGE-PICARCQRDNVACH-YS 59
                9***********986.77***********9.65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3041.20
//
Query:       CCE28981.1  [L=281]
Description: uncharacterized protein CPUR_02672 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-08   32.0   0.0    1.4e-07   31.5   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    9.3e-06   26.3   0.0    2.1e-05   25.1   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    0.00016   21.5   0.0    0.00041   20.2   0.0    1.7  1  Methyltransf_31  Methyltransferase domain
    0.00095   19.8   0.0      0.002   18.7   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
     0.0031   18.2   0.0     0.0065   17.2   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
       0.16   12.3   0.4        7.1    7.0   0.1    2.5  2  GbpA_2           N-acetylglucosamine binding protein domain 2


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   4.7e-11   1.4e-07      20     121 ..      43     153 ..      23     203 .. 0.73

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 4.7e-11
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf...svtgvDlspeaveiaekakkaqkdqfdeqeaaepqg.................kfdlIvlrevle 93 
                      +r++ r+Ld G++  ++l  l++ +    ++tg D+ pe+ +    +++ ++                              +fd++++r+vl 
       CCE28981.1  43 ERPDLRILDSGTAQANWLLDLAALVPttaQLTGTDIAPEQFPP---PSQRPPN-----------MtlqkqsifdpwneamlgSFDVVHQRFVLA 122
                      68888**********99888866543367*******9864443...2222222...........233444467777777899************ PP

  Methyltransf_23  94 hvpd...ppellrqiatllkpgGylllsepl 121
                        ++     ++++ + +l+kpgG+++l+e +
       CCE28981.1 123 ACQSdehGQRAVADLLALTKPGGWIELHEGN 153
                      ***534477******************9954 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   7.1e-09   2.1e-05       1      97 []      49     145 ..      49     145 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 7.1e-09
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BS.SSTTTEEEEEEESTGGG.SSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeeglnvefvqgdaed.lp.fedgsfDlvvssgalhh.lsdedlekalkeia 90 
                      +Ld G+ + +++l+la+ ++  a++tg+Di++e+     +r     +n++++++++ d ++    gsfD+v+ +++l    sde+ ++a++ + 
       CCE28981.1  49 ILDSGTAQANWLLDLAALVPtTAQLTGTDIAPEQFPPPSQRP----PNMTLQKQSIFDpWNeAMLGSFDVVHQRFVLAAcQSDEHGQRAVADLL 138
                      8******************559**************999998....8*********8844425788**********76636777889******* PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                       ++kpgG
       CCE28981.1 139 ALTKPGG 145
                      ******9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.4e-07   0.00041       3     118 ..      45     158 ..      43     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.4e-07
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsnevl...naladpd 91 
                       +lr+lD G+++ + ++ la ++ + a+++G Di +e      ++       n+++++++i++  +++ l   +fD+++ + vl   +   + +
       CCE28981.1  45 PDLRILDSGTAQANWLLDLAALVPTTAQLTGTDIAPEQFPPPSQR-----PPNMTLQKQSIFDpWNEAmL--GSFDVVHQRFVLaacQSDEHGQ 131
                      6899****************99999*************9999998.....77***********7776644..69*******8887767778888 PP

  Methyltransf_31  92 kileeiervlkpggilliedprllael 118
                       +   +  + kpgg + + + ++la +
       CCE28981.1 132 RAVADLLALTKPGGWIELHEGNMLAIQ 158
                      899999999999998888888744444 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.8e-07     0.002       1      94 [.      50     147 ..      50     149 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.8e-07
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT...-EEEEEEES-CCC-...CCHHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseeglkvefvvadaeklpfedn...sfDlvvssevlhhv...edpekalkeia 85 
                      Ld G+ +   + +la  +   a+++g+D+++e+       +++++ +++++++++ + p +++   sfD+v  ++vl  +   e  ++a++ + 
       CCE28981.1  50 LDSGTAQANWLLDLAALVpttAQLTGTDIAPEQFPP---PSQRPP-NMTLQKQSIFD-PWNEAmlgSFDVVHQRFVLAACqsdEHGQRAVADLL 138
                      6777777777888886666779**********9933...344444.58899*****9.88875555**************998899******** PP

                      HHEEEEEEE CS
  Methyltransf_11  86 RvLkpgGll 94 
                       + kpgG++
       CCE28981.1 139 ALTKPGGWI 147
                      *******97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.2e-06    0.0065       4      99 .]      53     147 ..      50     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.2e-06
  Methyltransf_12   4 GcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhl...kdirevldnir 90 
                      G+  ++ l  l++    ++++tg+Di p+++            ++  n++l++++++d   +   +sfD+v+  +vl ++   ++ +++++ + 
       CCE28981.1  53 GTAQANWLLDLAALVpTTAQLTGTDIAPEQF--------PPPSQRPPNMTLQKQSIFDPWNEamlGSFDVVHQRFVLAACqsdEHGQRAVADLL 138
                      5556666666666666789999*********........334445556677777766666667778***************999999******* PP

  Methyltransf_12  91 klLkpgGrl 99 
                      +l kpgG++
       CCE28981.1 139 ALTKPGGWI 147
                      *******86 PP

>> GbpA_2  N-acetylglucosamine binding protein domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.053   1.6e+02      43      62 ..      52      71 ..      40      76 .. 0.80
   2 ?    7.0   0.1    0.0024       7.1      32      70 ..     205     244 ..     196     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.053
                GGGSHHHHHHHHHHHHHHH- CS
      GbpA_2 43 aegkaanWayaLAqkiNaes 62
                + +++anW  +LA  + ++ 
  CCE28981.1 52 SGTAQANWLLDLAALVPTTA 71
                56889********9997765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0024
                 GG--EEE--SCGGGSHHHHHHHHHHHHHHH-SSEEESE.E CS
      GbpA_2  32 eletlliiasaaegkaanWayaLAqkiNaesslvraGv.k 70 
                 e +t+ + a a ++++a+W+++L+    ++ + + aG+  
  CCE28981.1 205 EVQTIGLGAAARNQQEAEWSTELCLNMLRTIRRMTAGKgA 244
                 45888888999*************9999999999999843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2224.00
//
Query:       CCE28982.1  [L=425]
Description: related to microsomal dipeptidase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-99  333.2   0.7    1.9e-99  332.8   0.7    1.0  1  Peptidase_M19  Membrane dipeptidase (Peptidase family M19)


Domain annotation for each model (and alignments):
>> Peptidase_M19  Membrane dipeptidase (Peptidase family M19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.8   0.7  1.1e-103   1.9e-99      10     319 .]      44     366 ..      42     366 .. 0.95

  Alignments for each domain:
  == domain 1  score: 332.8 bits;  conditional E-value: 1.1e-103
                    EEEE-HHHHHHHCTTTTT....-TTTHCTSSS-HHHHHHHTEEEEEEEEE--C........CCCCCCHHHHHHHHHHHHHHHHHHGTTTEEE-SSH CS
  Peptidase_M19  10 Dghndlplklrqekkesl....llekdselqtdlerlraggvsavlfaifvpe........dasyeeavkatleqidlirrlvrknpeqlklvrta 93 
                    Dghnd +  +r+  + +     + +kd  +++dl+rl +g+ +av+++++v++        da ++ ++++t +qidl++r+++ ++++++++++a
     CCE28982.1  44 DGHNDWMHMIRAYYDFQVddrfQPTKDLAGHVDLKRLVQGRAGAVFWSVYVECpkgendfsDAVHHASMRDTFQQIDLLQRIMELYSDRMEMAHKA 139
                    778877766555443332456678999**********************************999******************************** PP

                    HHHHHHHHTT-EEEEEEEESCGGGTT-HHHHHHHHHTTEEEEES-SSS-BSSB-BCCGTT.SSSSB-HHHHHHHHHHHHHT-EEE-TTB-HHHHHH CS
  Peptidase_M19  94 ddierakkegkiavllgiegaealgddlallrafyalGvrvlgltynrnnkfAdgaleekdedgGLsefGkelVrelNrlgiliDlShlsektfld 189
                    dd+ r+++ gk+a+l+g eg+++lg++ ++lr f++lGvr+++l++ +nn + d+a++e   ++GLs+ G+++Vre+Nr+g+++DlSh+sek++ d
     CCE28982.1 140 DDVMRIFRSGKCASLMGAEGLHQLGNSSSVLRIFHRLGVRYVTLAHAKNNLYVDSATSEAPIHHGLSPQGRDMVREMNRIGMIVDLSHVSEKAMVD 235
                    ***********************************************************9************************************ PP

                    HHHH-SSE.EECCEEBTTTS--TTSB-HHHHHHHHHTT-EEEE-SSHHHCTTT.S--BHHHHHHHHHHHHHHT-GGGEEE---TTTTSS-BBTBSS CS
  Peptidase_M19 190 vlelSkaPvvaSHSnaralcdhpRNltDeqlkaiaesgGvvgvtfvpaflkek.aeatledvvdhidyivelaGidhVGlGsDfdgggelpegled 284
                    +l++S aPv++SHS+a+al++h RN++D++l++++++ G++++ f+p   +++ ++at+e+vvdh+ ++ +++G dh GlGsDfdg + +++gled
     CCE28982.1 236 ALDVSLAPVIFSHSSAYALVPHVRNVPDHVLDRLKQNRGIIMISFIPWLTNKDpEKATVENVVDHVLHVGNRIGFDHLGLGSDFDGMPSHVQGLED 331
                    **********************************************8776655799**************************************** PP

                    GGGHHHHHHHHHHTTS-HHHHHHHHTHHHHHHHHH CS
  Peptidase_M19 285 vsklpnltaeLlrrgyseadiekilggNflrvlee 319
                    vsk+pn++a++l+rg s +++eki+g N++rvl+e
     CCE28982.1 332 VSKYPNVVAAMLQRGISTENVEKIMGMNVIRVLRE 366
                    ********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3023.34
//
Query:       CCE28983.1  [L=222]
Description: uncharacterized protein CPUR_02674 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00018   21.9   0.0    0.00026   21.3   0.0    1.4  1  AIG2_2    AIG2-like family


Domain annotation for each model (and alignments):
>> AIG2_2  AIG2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.4e-08   0.00026      49      83 .]     109     143 ..      57     143 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.4e-08
      AIG2_2  49 vlsnqpetkPsetYlkvlvkGAeesglPedYvkrL 83 
                  +++++e  Ps++Y+ vl +GA+e  lP +Y +rL
  CCE28983.1 109 NVDASNERLPSARYIGVLTRGANELNLPLSYQRRL 143
                 355667788**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1766.71
//
Query:       CCE28984.1  [L=542]
Description: probable DHA14-like major facilitator; ABC transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-44  151.8  43.2    4.8e-44  150.7  43.2    1.6  1  MFS_1     Major Facilitator Superfamily
    1.1e-08   34.4  10.8    1.1e-08   34.4  10.8    2.9  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7  43.2   5.4e-48   4.8e-44       1     352 [.      43     445 ..      43     446 .. 0.89

  Alignments for each domain:
  == domain 1  score: 150.7 bits;  conditional E-value: 5.4e-48
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+l++fl +l+ +i+++a+p ++++d+  +   +g+ +t+y l+++ +++ +G l + ++ + +ll++l++f lg+++++ a+++++l+v+r+++Glga
  CCE28984.1  43 LCLSLFLCGLDQTIITTAVP-IITNDFK-AIEDVGWYTTAYLLTTSSFQIAYGKLYTTLSVKMILLMALAIFELGSIICAAAPNSTTLIVGRAIAGLGA 139
                 6899****************.9******.9*********************************************77777458888************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 +++fp++  ++++ +p e+r+  +g+ +++f++++++gp +gg++a+ ++Wr++f+i+ +++++ +v++ ++++++  +   + + +++          
  CCE28984.1 140 AGIFPGSTLVLVHAAPMERRPALLGITTGMFGIASLCGPFIGGAFADGASWRWCFIINVPLGVITAVIVTFFVFTPVDPLYAEWTFKDKlayakipeil 238
                 *************************************************************************9999999999999999********** PP

       MFS_1 189 .............................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsg 242
                                                              +   ++  +p  ++++k++ +w++ i +l+ + ++++++t+lp+y+q   + s 
  CCE28984.1 239 vlvaalvclvlglqwggttyawsdgriiallvvfavlttaflvlqVLLPKSRTIP--TSIVKNRNIWFASIFALCSSGAMFIAVTYLPIYFQAIKNAS- 334
                 *****************************99999999999998875666666666..78888999**66666666666********************. PP

       MFS_1 243 lllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt.ssavllllvlvliGfglgfvfpsllalasdlappeeagtasgl 340
                 +l++g+ ++ l l+++++++++g + + +g  ++ ++ + +l+ + +gl+ +    + ++ ++   +l+Gfg gf     +++a++++ ++   + +++
  CCE28984.1 335 ALSSGVNVMPLILGFLVMSIISGVITNTTGYYNPSMFLCTILASVGAGLVSTFDVgTPQPKWIGYQALLGFGIGFGLQQPIVCAQHVLDERDVPFGVAF 433
                 8****9999999999999**********999555444444444444444444444366666666778888888888888899***************** PP

       MFS_1 341 fntagslggalg 352
                 +n+++ lgga++
  CCE28984.1 434 INMMQMLGGAIF 445
                 *********996 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4  10.8   1.2e-12   1.1e-08      48     191 ..      74     211 ..      25     231 .. 0.87
   2 !    8.0   5.3   0.00013       1.2      43     118 ..     333     409 ..     300     416 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 1.2e-12
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                 +g+ + ++l+     ++  g+l ++++ k +ll+a ++f  g++++aaa+   +   livgR ++G+g+ ++   +++ +   Ap + R al +++  +
  CCE28984.1  74 VGWYTTAYLLTTSSFQIAYGKLYTTLSVKMILLMALAIFELGSIICAAAP---NSTTLIVGRAIAGLGAAGIFPGSTLVLVHAAPMERRPALLGITTGM 169
                 5677777777777778899*******************************...99******************************************** PP

                 HHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS CS
    Sugar_tr 147 itfGilvaaifglglnktsnadgwrillglqlvpallllilllfl 191
                   +  l + ++g ++++  +   wr+ + +++ + ++ +++++f+
  CCE28984.1 170 FGIASLCGPFIGGAFADGAS---WRWCFIINVPLGVITAVIVTFF 211
                 ********************...9999998888888887777664 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00013
                 H...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHHHHHHH-TTTTSS-TGGGGG.HHHHHHHHHH CS
    Sugar_tr  43 essvlsglivsiflvGaiiGslfagllgdrfGRkkslli.aavlfvigavlqaaakgknsvevlivg.RvlvGigvGl 118
                 +s++ sg+ v  +++G ++ s+++g ++++ G+ +  ++ +++l+++ga l  + + + + +   +g + l+G+g+G+
  CCE28984.1 333 ASALSSGVNVMPLILGFLVMSIISGVITNTTGYYNPSMFlCTILASVGAGLVSTFDVG-TPQPKWIGyQALLGFGIGF 409
                 35677899999*********************9887777799********99999977.555555555*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3857.23
//
Query:       CCE28985.1  [L=249]
Description: uncharacterized protein CPUR_02676 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-08   32.4   0.0      2e-07   31.3   0.0    1.5  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    0.00013   22.1   0.0    0.00024   21.3   0.0    1.4  1  GST_C     Glutathione S-transferase, C-terminal domain
    0.00021   21.5   0.0    0.00038   20.7   0.0    1.4  1  GST_N_2   Glutathione S-transferase, N-terminal domain
     0.0019   18.2   1.2     0.0047   16.9   1.2    1.7  1  GST_C_2   Glutathione S-transferase, C-terminal domain
     0.0042   17.4   0.0      0.015   15.6   0.0    1.9  2  GST_N     Glutathione S-transferase, N-terminal domain
     0.0093   16.1   0.0      0.018   15.2   0.0    1.4  1  GST_C_3   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   6.8e-11     2e-07       9      72 ..      32     106 ..      29     115 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 6.8e-11
                 HHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-TT--SSEEET.T..S-........EEESHHHHHHHHHHHH- CS
     GST_N_3   9 yarrvrlaLnekglpvevvevtpgehdeellaknplgkvPvLed.d..ge........altdSlaIidyLeelyp 72 
                 ++ ++ ++L+ + +p+ ++ ++  +   +++++np++++P+Led d  ++         ++dS+a++ yL+++++
  CCE28985.1  32 NSLKPLMILEALEIPYSIHLISSLSQETWYHEINPYKQLPALEDiDlvETsggskrrlNVFDSSAMLIYLCDKHD 106
                 677999****************9999****************64245422455799999**************98 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   7.9e-08   0.00024      12      89 ..     141     221 ..     131     224 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 7.9e-08
                 HHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH..TSSSSS.TTSSCHHHHHHHHHHH..HHHHHTTTTTTTTSHHHHHHHHHH CS
       GST_C  12 fyvkaeekkeelvdealekvaevlsaleeelk..kqdylv.GdkltlADialvpiln..wlqrlglafgqekfpnlkawleri 89 
                 ++++++e+ ++++   ++++++ +++le++l   +q +++  d++t+AD+a+ p++n  +++   ++f  e++p  kaw e +
  CCE28985.1 141 LKMRHDENLKPALRVIENAIRREYDILEKRLGepGQRWIAlADRPTVADFAIQPLANprVARNAAIDF--EAWPRTKAWSEAV 221
                 555666899999999999****************9***9846***************65555566666..8********9875 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.3e-07   0.00038       7      69 ..      35     103 ..      31     104 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.3e-07
                 HHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-........CTTE....EEESHHHHHHHHHH CS
     GST_N_2   7 RvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwd........kdgq....vineSseIlrylet 69 
                 + l+ l+ + +++ i+ +     + + + ++ ++np+ ++P+L d           +     + +Ss++l yl++
  CCE28985.1  35 KPLMILEALEIPYSIHLI----SSLSQETWYHEINPYKQLPALEDidlvetsgG--SkrrlNVFDSSAMLIYLCD 103
                 77999*************....4466667****************999876431..25664666********986 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.2   1.6e-06    0.0047       4      69 .]     153     220 ..     119     220 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.6e-06
                 HCHHHHHCCHCHHHCTTT---SS....CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHHHH CS
     GST_C_2   4 veraleqldaaldaleahLadsp...flfGdqptlaDialapflvrlraagpgfdireaypnlraWler 69 
                 ++ +++++++  d le++L+       ++ d+pt+aD+a  p      a+  ++d  ea+p+ +aW e+
  CCE28985.1 153 LRVIENAIRREYDILEKRLGEPGqrwIALADRPTVADFAIQPLANPRVARNAAID-FEAWPRTKAWSEA 220
                 4557888999999*******87788788889***********9997777776554.469*******986 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.9e-06     0.015      12      61 ..      31      77 ..      27     101 .. 0.85
   2 ?   -2.1   0.0       1.8   5.2e+03      12      24 ..     118     130 ..     110     134 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.9e-06
                HTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEETT CS
       GST_N 12 prahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedng 61
                +++ ++++ l+a++++y +  + +     ++ ++  +np++++PaLed +
  CCE28985.1 31 ANSLKPLMILEALEIPYSIHLISS---LSQETWYHEINPYKQLPALEDID 77
                5788999****************7...44458***************975 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.8
                 HTHHHHHHHHHHT CS
       GST_N  12 prahrirlllaak 24 
                 +ra ++ +l+a++
  CCE28985.1 118 ERAQVTSWLIAYA 130
                 4888999999954 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     6e-06     0.018      21      89 ..     152     224 ..     137     229 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6e-06
                 HHHHHHHHHHCHHHHHHHHHHCHGTSSSS.TTS--HHHHHHHHHHHHHHHH...TCC.CC-HHHHHHHHHHHTS CS
     GST_C_3  21 kkefleerlpkflkyfekvlkkkgggylv.gdklTyADlalfqvldgleea...eal.kkfpklkalyervear 89 
                 +  ++e+ + + ++ +ek l + g+ +++  d+ T+AD+a+  + +  + a   +++ +++p+ ka+ e+v  +
  CCE28985.1 152 ALRVIENAIRREYDILEKRLGEPGQRWIAlADRPTVADFAIQPLANP-RVArnaAIDfEAWPRTKAWSEAVDRL 224
                 5678999**************888889998**********9875554.33335544479999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1928.01
//
Query:       CCE28986.1  [L=505]
Description: uncharacterized protein CPUR_02677 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-50  170.6   0.0    7.8e-50  170.0   0.0    1.2  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   0.0   4.3e-54   7.8e-50      31     446 ..      82     477 ..      57     491 .. 0.89

  Alignments for each domain:
  == domain 1  score: 170.0 bits;  conditional E-value: 4.3e-54
                 HHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHHHHHHHHHHHH CS
        p450  31 kkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelveeeaedlvekl 129
                 +kygp++r++ g++p +v+++pe+v++  ++++ + ++r  +a    +  + +g+ + + +g +w k R+ + p++ ++ +    + v   a++ v+kl
  CCE28986.1  82 QKYGPVYRIWAGTTPEIVITKPEDVRAFHVDSSRHNKARSSNAGWLFH--QLLGECMGLISGTRWIKVRSEFEPAFSHSAITMKAAEVSNDAQCYVNKL 178
                 79*****************************99887777666654432..68999999999****************9944434455788899****** PP

                 HCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 130 rkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerr 228
                 +k++++s ++  +e ++++++   ++ l+g+    l +e+++el ++ +++++++ +     l+ fp++++l  +  ++l++   + + + +++ +++ 
  CCE28986.1 179 EKSRSSSFTVQAAEAVARFPFFCTATHLYGE----LSEEERNELWELGQRNLKMMGHVLSGGLFRFPIARWLYRSAVQDLESFLCDWASFNERIYKKKV 273
                 ****999999999999999999999999999....7778889*********************************999999999999998888888887 PP

                 HCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHH CS
        p450 229 etldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldav 327
                     ++    ++  + +++ +        l++ee  +t+ e+lfa  d  +  lsw  ++La n ++q+++ eEi ++ ++   +++ +  k ++l  +
  CCE28986.1 274 GCGAKT--PIVSAWKKVIDGD--------LTREEAIHTLSEILFANLDVATGNLSWLVIYLAANEDIQRQVVEEISQHRHE---LDHYCARKDTLLAYC 359
                 777777..8999999999995........*********************************************9999877...66777777799**** PP

                 HHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHH CS
        p450 328 ikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklf 425
                 + EtLRl+p++ +++p   ++  v+ g+++p +t v+vn+ a++++ +++ +++e+F p RF + +       +  + FG+G R C+G ++A+m++k+f
  CCE28986.1 360 VLETLRLRPFTAFSIPESSPNQKVLHGFTVPGNTSVVVNTLAINYNAAFWgDKAEVFSPNRFHSINR--LALRYNLFTFGMGTRKCLGSHFAEMMMKYF 456
                 *****************************************************************98..479*************************** PP

                 HHHHHHHEEEEESTSTSGGEE CS
        p450 426 latlLqnFevelqpetdpppi 446
                  ++lL +F+++++ e+d  + 
  CCE28986.1 457 AMHLLNRFSLHIPVEKDRSKA 477
                 ***********9655544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3921.05
//
Query:       CCE28987.1  [L=444]
Description: uncharacterized protein CPUR_02678 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.9e-103  344.9   0.3   9.7e-103  344.4   0.3    1.2  1  Trp_DMAT   Tryptophan dimethylallyltransferase
  ------ inclusion threshold ------
      0.078   13.2   0.0       0.26   11.5   0.0    1.8  2  TetR_C_16  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> Trp_DMAT  Tryptophan dimethylallyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.4   0.3  1.1e-106  9.7e-103       3     354 ..      48     388 ..      46     398 .. 0.94

  Alignments for each domain:
  == domain 1  score: 344.4 bits;  conditional E-value: 1.1e-106
                 HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTGGGC-S--.ECSTC-SS--TTSTT--SEEEEEETTT.....TEEEEEE--B-TTBTSTTBTT- CS
    Trp_DMAT   3 rfWwkttgpllaslLeeagYsveqqyehLlffrkvvvPaLGprp.askrspkwkslltddgsPiElSwnfsssgdkkptvRfaiepigplagteedpln 100
                 + W +++g +l s+++ agYs++ q+ h  ff++ v+ +LG +p +++ ++ w+s++tdd++P+E+Sw +s+++  +p+vR+a epi+ +agt++dpln
  CCE28987.1  48 KLWDEDIGAMLVSMMRLAGYSEQSQKTHRIFFKEQVARSLGLYPtTYPHQSAWESFMTDDHTPVEMSWSWSGNT-PTPVVRYAAEPISWHAGTASDPLN 145
                 78******************************************7666699*******************9955.99********************** PP

                 -CHHHHHHHHHHHH.STT---HHHHHHHHHHS--HHHHHHHHHGGGTTTS----EEEEEEEETTTEEEEEEEE-THHHHHHHT--HHHHHHHHHHHHCS CS
    Trp_DMAT 101 qqatrellerlaqlavpgvdlewfdhfkealllseeeeaklaekgekskkaksqvflafdlkkggkivlKaYffPrlkalatgqsaeelvfdairalkp 199
                 ++at+e+l++ a la p++dl+w++hf ++l+ ++++ ++       ++ + sq f+afdl+k + +++K Yf+P lk+la g+++ el+ ++i +l +
  CCE28987.1 146 SEATTECLASTAPLA-PSLDLRWYRHFLKHLVADDSDGQHD------TTDHLSQEFIAFDLDK-DSMTVKYYFLPTLKSLACGKTNLELMEESILSLPE 236
                 **************7.***************9777777666......455679*********6.79*******************************77 PP

                 ..GCCHHHHHHHHHHHHHCE----EEEEEEEEESS-CCC--EEEEEEESEESHHHHHHHHTTTTT-SH.HHHHHHHHHHHHH.HHCT---EE----... CS
    Trp_DMAT 200 .geelepalklleeylesrpkkeklrpellsiDcvdpsksRlKiYlrtpstsfdsvrdvmtLGGrlddeeteeglellrelwklllglpegfrplpek. 296
                   e++ ++lk+l  y++  p+ e++++e++++Dcv+p++sRlKiY+r+++t+fds+ ++mtLGG+  d  t+++++ lrelw + ++lp+     p++ 
  CCE28987.1 237 aDEAVRSSLKVLTTYIRAYPQDEQPQAEIFAVDCVNPANSRLKIYVRSRKTTFDSMLEMMTLGGQTPD-LTRDAIDSLRELWCACFALPN----NPSVt 330
                 7899**************************************************************55.9********************....34345 PP

                 .............EEEEEEE-TT-SS-EEEEEEE-T..TS-HHHHHHHHHHHHHHCT- CS
    Trp_DMAT 297 sktekdesslssgllfyfelkpgkelPepKvYipvrhygenDlaiaraleeffeklgw 354
                 sk+ ++++++++gll+yfel+pg +lP +KvY+pvrhyg++D +iar+l+ ++ k+g+
  CCE28987.1 331 SKPLRSKEHRTGGLLYYFELRPGAALPTSKVYLPVRHYGKTDDQIARGLSSYLYKRGQ 388
                 7999999999**********************************************96 PP

>> TetR_C_16  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.9e-05      0.26      10      52 ..      45      87 ..      44      89 .. 0.92
   2 ?   -3.0   0.0      0.96   8.6e+03      34      44 ..     235     245 ..     222     274 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.9e-05
                HHHHHHHHHT-HHHHHHHHH--------HHHHHHHHHHHHHHC CS
   TetR_C_16 10 avlevwepearepllallrsalsseeaaellrefleeqvlapl 52
                + +++w+++ ++ l+ ++r a  se+++++ r f++eqv+++l
  CCE28987.1 45 YHIKLWDEDIGAMLVSMMRLAGYSEQSQKTHRIFFKEQVARSL 87
                66899*********************************99876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.96
                 ----HHHHHHH CS
   TetR_C_16  34 eeaaellrefl 44 
                 +ea e++r+ l
  CCE28987.1 235 PEADEAVRSSL 245
                 44444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3567.53
//
Query:       CCE28988.1  [L=425]
Description: related to 1-aminocyclopropane-1-carboxylate synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-46  158.0   0.0    4.1e-46  157.8   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.8   0.0   2.3e-50   4.1e-46       8     363 .]      38     404 ..      29     404 .. 0.82

  Alignments for each domain:
  == domain 1  score: 157.8 bits;  conditional E-value: 2.3e-50
                    SSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEES CS
  Aminotran_1_2   8 sneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllklnpgdeilvpdp 101
                    +n++l ++  p+++++  a+     ++++l+ +    g p+++  +a++++   ++  +++++  +v+g G + +++ali ++ ++pgd il+ +p
     CCE28988.1  38 ENQLLMEELLPEFQAAFDANT---WSSQELAYSEGVGGCPKVRGLIADLVNshFQPHAQVDKS-HIVLGAGGCFALNALIEAI-CDPGDGILIAAP 128
                    455555544477888777775...59999999999999*************887889999999.9999999999999999999.79********** PP

                    S-THHHHHH...HHTTSEEEEEEBEETTTTEE-.HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTC CS
  Aminotran_1_2 102 tyasyknil...rlsggevvryplyseedfhld.lealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagf 193
                    +++  +  +   + +++ vvr+p  +e+ f++  + ++ +al +ap      k +++++phNP G  +++e+l++++d++ ++ ++l++De+Ya  
     CCE28988.1 129 YWPGLDLSIsvhNDAKAVVVRVP--HEDFFRVEsIRHYSKALLSAPNLV---KAMIICNPHNPLGRNYPRETLQAIVDFCAERQIHLISDEVYALS 219
                    ****9866621144555566666..778888754789999999987555...5****************************************976 PP

                    BSSSS.HTHHH........HGGSTTSTT...EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 194 vfgsl.davat........ranveeepn...llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleem 277
                       ++ +             + +++  +   +++v+slsK+fG+ G+R+G+++++++ +  +  + ++ + +s ++ +va+ +  +++ ++++++ 
     CCE28988.1 220 QHVQPtS---EnpsagfvsALSLDASHArglVHVVYSLSKDFGCNGIRLGAFISQDNKAVVMSGALSTHCQTSTMATLVAQKIILTDENIQFVNTY 312
                    6665431...12344566667777766679************************887777777777777886666666666666666667899999 PP

                    HHHHHHHHHHHHHHHHHS.TEEEECCSCSSEEEEEETHH....CHHHHHHHHHHTCTEEEEEGGGGTS..TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 278 rqrlqkrrkelrdeLael.glkvlasqsgmflltdlsae....takelskkLleevgvyvtpgtsftv..pgrlRitvAglteeeleelveal 363
                     + l k++ ++ +e+ +   +++++ + gm+ +  l+      ++++l++++l + g+++++gt +++  pg++Ri++ g+++e+l++ +++l
     CCE28988.1 313 GRGLLKSAYTVMEEFLNQhRIEFVSAECGMYIFAKLCGDrtsvDDEWLFQAILRRNGLVLSAGTDYHCktPGWFRICY-GCDREKLRHGLDRL 404
                    9998888888888775556********************************99999**********************.*********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.21s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3109.71
//
Query:       CCE28989.1  [L=2049]
Description: non-ribosomal peptide synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.9e-138  461.7   0.0    2.8e-72  243.6   0.0    2.2  2  AMP-binding    AMP-binding enzyme
      7e-75  252.4   0.0    4.3e-39  134.5   0.0    2.6  2  Condensation   Condensation domain
    6.7e-22   77.6   1.0    1.6e-10   41.2   0.1    2.8  2  PP-binding     Phosphopantetheine attachment site
    5.9e-11   43.2   0.0    0.00021   22.2   0.0    2.9  2  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.6   0.0   6.2e-76   2.8e-72       2     422 ..      13     395 ..      12     396 .. 0.84
   2 !  216.1   0.0   1.4e-67   6.3e-64       6     423 .]    1072    1452 ..    1067    1452 .. 0.84

  Alignments for each domain:
  == domain 1  score: 243.6 bits;  conditional E-value: 6.2e-76
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEET.TS-HHHHHHHHHHHTESEE CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnp.tltaeelayiledseakvl 98 
                  +++a+ +p++ a+       ++TY+el+++++r+A+ L   Gv+kgd+V +l  +++e+++  lai+++Ga++vp+ + ++++++++ +l++ e k+l
   CCE28989.1  13 RHHAEAHPEALAISK--NEDQITYGELYAASTRIAQLLADQGVEKGDVVPLLGSRCLEMIACTLAIFMIGATLVPMEAgSWSEARIQTVLDALEYKTL 108
                  6899*********66..8999******************88*************************************889***************** PP

                  EETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH..HH CS
  AMP-binding  99 iatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk..le 194
                  +  v +         ++++ +++++i +++ + + +    ++ +++++    + + + +  d+ayii+TSGTTG+PKGV ++h++l++ v+ ++   +
   CCE28989.1 109 L--VTA---------DGDV-RRRKTIDYHEIQRAMTGGNGWDCGNAKV----PINGPESVRDVAYIIFTSGTTGNPKGVKVTHQSLLNYVWPAHanAP 190
                  *..432.........2222.2333344443333344444444444433....24446778*****************************999875333 PP

                  HC.SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEEEE CS
  AMP-binding 195 tr.fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslrlvll 290
                      +++++d+ l   ++a+++ +   ll +l++G+ v l++++++      +++ +  k+t+++++P++l  + + s            s +r ++l
   CCE28989.1 191 -FnLGVGPSDTSLLLFSVAFDAFY-GVLLSTLCNGGHVLLSEPSTF------IDDAK--KCTLLPATPTLLGTISDvS----------PYSNVRGIFL 268
                  .2467888***************8.***************998877......67888..***************8844..........3456****** PP

                  ESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEET.TS-SEBTT-HHHHHH CS
  AMP-binding 291 ggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgp.gvmkgYlkkpeatae 387
                  gge + p+++r++    +  ++++YG+TEtt+ vt+++l+ d + +   G p+++ ++ i+D +    +++ ++Ge++v g   ++ gY+k++++t +
   CCE28989.1 269 GGETPTPDVVRKWWTPSRS-MWNAYGPTETTVSVTMAELRPD-VPI-VLGEPIRNSKIIILDSN----LEEATQGEICVLGStVLALGYYKNQAQTDD 359
                  ****************987.**************96555555.333.47*************99....556689****99994589************ PP

                  HEEE..TCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 388 afds..egrwlrTGDlgrldedGyleivgRkkdlikl 422
                  +f+   ++r +rTGD+++++e+  l+++gRk++lik 
   CCE28989.1 360 KFVLwnNERIYRTGDMAKWTEN-GLKFLGRKDQLIKN 395
                  **9564368***********76.6***********96 PP

  == domain 2  score: 216.1 bits;  conditional E-value: 1.4e-67
                   HHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEET CS
  AMP-binding    6 aktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliat 101 
                   a +p  val +     +l Y+eld+ +n+lA  +r   +++ d+Va+l++ s  w++ ++ i kaGa++ pl+++l+a++++ ++e s+a +++  
   CCE28989.1 1072 AAWPMSVALES--LSGKLLYQELDDITNALACSIRG-LIRPRDVVALLSDGSQNWLLGVISIIKAGATYLPLDTKLPAQRMEAMMETSGACLCV-- 1162
                   66777888866..788999***************96.58*******************************************************.. PP

                   CTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCS CS
  AMP-binding  102 vdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrf 197 
                   + ++    +l+a ++l ++   +v+++++  k+  +++++   +++     e+ + pdd ayi++TSG+TG+PKG+ ++hr++++   s++ + r 
   CCE28989.1 1163 YPNAS---SLAAFSDLSKP-RYLVYEHAA-VKT--MNGSS---SDR--L--EDIVGPDDYAYIMFTSGSTGTPKGIRVTHRATTSH-LSFE-PARL 1242
                   54444...44455544333.345555433.333..34443...322..3..33599**************************9999.5544.4445 PP

                   CCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS CS
  AMP-binding  198 klkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllgge 293 
                    ++++ +  ++ +  +++ + +e++++l+ Gat+vl ++ ++      ++ ++  +v   + +P++l  l             +l+ l  ++l ge
   CCE28989.1 1243 HARPGRRHAQVFSPGFDVNI-AEIFGTLCYGATLVLKDPADP------FAHLS--RVDAAMITPSFLSVLSPT----------ELQNLDSIYLIGE 1319
                   567899*************7.***************776666......34455..89999********99443..........6788999999*** PP

                   -EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-..HHHHHH CS
  AMP-binding  294 plspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkk..peatae 387 
                   ++s++l+++++   +  +++ YG+ E+t++v++ +le    ++ + Gk +p v ++i+D   ++pvp g+ Ge+++ g ++m+gY ++  +e t++
   CCE28989.1 1320 AVSQSLADRWSPG-RV-LYNFYGPCECTIAVAYTRLEIG--RPVTLGKTIPRVGCYILDRL-LRPVPMGVIGEICLYGVQTMEGYIGQnaDEVTKR 1410
                   ***********98.44.9*************96554444..6779***************9.************************9634699*** PP

                   HEEE.....T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding  388 afds.....e.grwlrTGDlgrldedGyleivgRkkdliklr 423 
                   af++     + +r++rTGDl++++e+ ++++vgR+++++k+r
   CCE28989.1 1411 AFVQdpfrrPgERMYRTGDLAFWTENMEMRYVGRADHQVKVR 1452
                   **97899985467***************************96 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   7.4e-37   3.3e-33       3     431 ..     605    1019 ..     603    1034 .. 0.83
   2 !  134.5   0.0   9.5e-43   4.3e-39      17     432 ..    1662    2044 ..    1651    2047 .. 0.85

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 7.4e-37
                    EEEEXXCCHHHHHHHHHHSSSSSTTEE.EEEEEE.ES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-.TT-----EEEE-T..TSSS CS
  Condensation    3 deyplspaQkrmwflekleeessaynm.qavlkl.egeldlerlekalqelierhdaLRtvfleeengepvQvil.eerevelevleisdleese 94  
                    +e++++++Q++m + + l+++++ y + +++l+     ++++rl++a+ +++ rhd++  +f       ++ v++  + + e ++l+ s   +s+
    CCE28989.1  605 REITMTDVQRGM-IRSTLHDAPTGYMLiTISLHQnARDIHPSRLSNAVSQVLGRHDIFCSSFD--LVRGTISVNDrYQHDWETRALDGS--PMSQ 694 
                    68899****776.67888999999976144454314568999********************4..457777788756677888888888..4444 PP

                    HHHHHHHHHHHH..HTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHC CS
  Condensation   95 eeeaieefaqkd..lqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyle 187 
                    + ++ +e++++   ++ + +    p   + l+  ++++ +ll+ vHH +vDG+S+g ll+d+ +     + +++  ++q++ +++y  +++  le
    CCE28989.1  695 AIADESELLNQRarMSDTSNEFFRPVNAFRLLLGENSESVLLWLVHHALVDGWSVGKLLNDFRAQL---LTEHSQAAQQSQ-FSQYTAALTPHLE 785 
                    445555555532113444444444788888888899**************************9755...677776776777.*******999666 PP

                    SHHHHHHHHHHHHHHH......S---BSS---SS---S-EEEEEE..EE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEES CS
  Condensation  188 skdlekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikl..deeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisg 280 
                    +   e +e +W+e ++g l+ ++L     r++++  +++r++ ++       e+++ +a++ g +   +++aa++llLs y ++d +v+g+++s 
    CCE28989.1  786 KV-HEPAELFWRESMAGLLDGTELKVG--RLEDGASNGSRIEHEClsLGLSLEQTEIAARALGFSPAVIFHAAWALLLSSYASEDAVVFGSVFSA 877 
                    65.8999*************9999666..777777777777777764444678889999************************************ PP

                    STTCSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCS CS
  Condensation  281 ReseikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlse 375 
                    R   + +ie++vG  +n  P+ ++v +  +  +l+++v+  ll++ ++q    + L++     ++     +f++ + +e  l   +++++++l++
    CCE28989.1  878 RSFHVPRIEEIVGPLINLCPFPVQVHALGSKMDLLSSVQSLLLQISEYQWSASKILQDIASGSHA----RIFSTALFLEYDLPLYASSDQHELAA 968 
                    ***888***************************************99999888888888876665....79*******766666*********** PP

                    EEECEE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHH CS
  Condensation  376 lklsvssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkell 431 
                     ++  +  +     ++ l+l+++++++ l ++   +   +++   +r+l ++++l 
    CCE28989.1  969 WTYDRKDWP-----EFGLTLQVQCVGEHLGFRAVIKDPKYESPLASRLLGHFRNLC 1019
                    ****66555.....**************************************9875 PP

  == domain 2  score: 134.5 bits;  conditional E-value: 9.5e-43
                    HHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHHHHHHHHTC-- CS
  Condensation   17 lekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaieefaqkdlqepf 111 
                    ++k   ++s++n+ + ++l+g +d+ +le+al++++++hd+LR +++e   + + Q++ ++ ++++  +e sd  + +   ++  +++     +f
    CCE28989.1 1662 MHKQASNPSSFNVVHRVRLQGDVDSLLLERALRTVVSKHDILRASYVE--VDGVPQRVIQTNTIQIDRIECSD--DVA---KLHDYIST----KF 1745
                    5666779***************************************74..5667788888999*********4..443...36677774....99 PP

                    SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT--....-----S--..HHHHHHHHHHHHCSHHHHHHHHHHHH CS
  Condensation  112 dLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgee....lplpqktp..YkdyaeweqqyleskdlekeeaYWse 200 
                    +L +g L+r+al+++    +++l+  HHii+D vS++i+l +l+  Y +l++ +e    + ++  +   Y+ +a w+ ++le+   +++ ++W+ 
    CCE28989.1 1746 EL-SGVLIRIALVERCGATDVVLV-QHHIITDQVSVQIFLTNLSMEYRALACRDEsgqtICTSDHSTndYHVWALWRDSQLEQPPENTHCEFWRS 1838
                    99.69*********7666666555.6*********************9997554411114333322246************************** PP

                    HHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--SS- CS
  Condensation  201 qlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvGlF 295 
                    q+ ++ +++ L +  ++ + ++f              +  r+l ++++    +v laa +l+L+k+++ + i  g+++  R ++  + e+m+G+F
    CCE28989.1 1839 QFGEKTESIRLVQH-QKHPAGEFH-------------SVPRRLKRNSSSGSIEVYLAAAALALQKVSRLNTIRLGVPFLDRLEP--GTENMMGVF 1917
                    ****9999999999.778888888.............334567888999999999*****************************..********* PP

                    EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE...E..... CS
  Condensation  296 vntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssveaeeesk 390 
                    +  lP+ +++++++++ +l+++++++l +a  +  +p   +++ + l+       +f++++++ n   ++  +   +  +  +sv+ +   + +k
    CCE28989.1 1918 LDALPVCVQIEPHTDLPSLLSTIRTTLTSA-LAHAIPSFMIKDIVGLDS------IFEVMIVY-N-RFEDRVTRNMSIPGVSISVEAMR-AQGAK 2002
                    ******************************.677899999*99999988......8*******.8.34444444444445555555444.899** PP

                    SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHH CS
  Condensation  391 ydlsleasetngkltikieYntslFdeetierflerlkelle 432 
                    + l +e  e+ +  t++ieY++++   ++++rf + + +ll+
    CCE28989.1 2003 FPLLIEFNEHVDHVTLEIEYSEDVLTPSSLSRFEQEICNLLD 2044
                    *********************************999988875 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.1   3.5e-14   1.6e-10       2      67 .]     505     569 ..     504     569 .. 0.97
   2 !   34.4   0.1   4.7e-12   2.1e-08       3      65 ..    1556    1619 ..    1555    1621 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 3.5e-14
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67 
                 +l + ++e+l +p++ i p+ ++ d G++Slla+++l+al+++ g+++++s lf +pt++e+++++
  CCE28989.1 505 ALMNTMSEALTIPAQMIRPELSFTDVGGNSLLAIKMLSALRQK-GLSLSMSSLFLLPTISEISNHI 569
                 68999**************************************.********************98 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 4.7e-12
  PP-binding    3 lrelvaevlgvplee.idpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                  + ++++ev+g+++e  ++ d+d+   G++Sl +++ + ++  ++g+++pls + + +++++laa
  CCE28989.1 1556 VSQVWREVIGLDEEIaLSIDDDFLAIGGNSLRQIAAAQKICSKLGCRVPLSLFITSRSIRSLAA 1619
                  6789*******7666579********************************************98 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     1e-06    0.0045       7      76 .]     411     472 ..     408     472 .. 0.83
   2 !   22.2   0.0   4.7e-08   0.00021       1      76 []    1460    1528 ..    1460    1528 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1e-06
                    HSSTTEEEEEEE-----TTS---EEEEEE..------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   7 vshpaVaeaaVvGvpdevkGealvafVvl..kdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    +s  +V+ a V    +    ++l+afV++   +g     + +++ +++++  + vp+++   d+lp+t +GK
     CCE28989.1 411 LSQNNVETATVL--MHR---QRLIAFVTPltVNG-----DLVRQEMARRFDQFLVPDEIQSRDQLPQTINGK 472
                    566667777777..666...9*******942233.....899*****************************9 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 4.7e-08
                     HHHHHHHSSTT.EEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C    1 evEsalvshpa.VaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                     e+E+++ ++++ V++ +++ v+      ++ af +++ g +   +++++ +r++l++yavp+ +++++++p t + K
     CCE28989.1 1460 EIENVIRRSDEnVSQSVAI-VHQ----DTIYAFATPQ-GAR--IDQIQQCLRQHLPSYAVPQLIIALEAFPTTPNQK 1528
                     89******99989999999.444....47*******5.643..7******************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2049 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.48
# Mc/sec: 12717.89
//
Query:       CCE28990.1  [L=321]
Description: uncharacterized protein CPUR_02681 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-18   66.1   0.6    4.1e-18   65.6   0.6    1.1  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    2.2e-06   27.1   0.1    5.5e-06   25.7   0.0    1.7  2  FAD_binding_2  FAD binding domain
    2.3e-06   27.1   0.0    0.00066   19.0   0.0    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      3e-06   26.2   0.2    0.00049   18.9   0.1    2.4  2  HI0933_like    HI0933-like protein
    0.00086   19.0   0.1     0.0026   17.4   0.1    1.5  1  DAO            FAD dependent oxidoreductase
     0.0013   18.9   0.0     0.0048   17.1   0.0    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0021   17.5   0.1     0.0037   16.7   0.1    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
     0.0041   16.2   1.6      0.013   14.6   0.7    2.4  2  GIDA           Glucose inhibited division protein A
     0.0046   17.0   0.2        1.2    9.1   0.1    2.8  3  NAD_binding_9  FAD-NAD(P)-binding
     0.0063   15.8   0.1      0.017   14.4   0.0    1.8  2  FAD_binding_3  FAD binding domain
  ------ inclusion threshold ------
       0.02   14.1   0.1      0.085   12.1   0.1    1.9  2  Thi4           Thi4 family
        0.2   10.7   0.0         15    4.6   0.0    2.2  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.6   2.7e-21   4.1e-18       2     291 ..       8     294 ..       7     297 .. 0.76

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 2.7e-21
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH.....HHHHCHHHHCCCCHCCTCEEEE.ESCEEEEETE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias.....evvkklnqgielllgeevvkid.pgkkkvklek 89 
                  d ++iGgGpAGl+aal  a+++   ++++    +     n    + + + g  ++a  +       +++    +i+ l g+ +v+   +++  ++l  
   CCE28990.1   8 DALIIGGGPAGLSAALAFARQNQSAIVFDsgryR-----NAATDYMHLIPGLDHKAPAEFratarSQITDRYDKIRILEGVDIVAAKkTDADSFEL-- 98 
                  568*****************99999999655441.....333333333333333333222344456666666688988887755554144456666.. PP

                  EECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEE...ES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  Pyr_redox_2  90 kkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivv...vGgGyiGvElAaalaklgkevtlveardrll.raldk 183
                   +++ +++    kl+lAtG +   l+ipG ae +gk++ ++  ++++++    + ++     G+ + ++ +A + + l k+vtl   +++ l  +l +
   CCE28990.1  99 -SDEAGQTWNGRKLILATGVEDVMLDIPGYAELWGKSIVHCLYCKGYEQRGGSAGVLAvgpLGNVNMALHIARQETALSKRVTLYSNGNESLaGELVS 195
                  .457789*****************************************999995554402267999999999999***************99655555 PP

                  HHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTS.BESSTTEEE-GGGCTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 184 elsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklglelderggivvdefl.rtnvpgiyaiGDvagg 280
                  +++ a + +  ++++    ++ v  +dg+g       edg+e+  d++   + v+++  l+ + lgle  ++g ++v +   + +v g++a+GD    
   CCE28990.1 196 AFGSATAMRTDARKI----KEFVAGADGKGV--AIRFEDGSEVVEDYLAHQAPVKAREGLA-DLLGLEKGPNGEVKVSSPFqQASVRGVFAAGDNG-- 284
                  666555555555533....466777777775..889*********************9999.*************9987662678*********65.. PP

                  CCSS--HHHHH CS
                  xxxxxxxxxxx RF
  Pyr_redox_2 281 kggpelaqaAv 291
                     ++++++Av
   CCE28990.1 285 -AMLKNVPNAV 294
                  .7777777776 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.7e-09   5.5e-06       1      39 [.       8      46 ..       8      48 .. 0.93
   2 ?   -2.4   0.0       1.2   1.8e+03     222     242 ..     214     235 ..     174     243 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.7e-09
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggata 39
                   D+++iG+G AGL+AAl+ a+++++ +v + + +++ at 
     CCE28990.1  8 DALIIGGGPAGLSAALAFARQNQSAIVFDSGRYRNAATD 46
                   89****************************999888775 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                    GTT-S-HHHHHHHCTTSS.EES CS
  FAD_binding_2 222 apavtGdglalalragaa.lnd 242
                    +++++G+g a+ +++g + ++d
     CCE28990.1 214 VAGADGKGVAIRFEDGSEvVED 235
                    3456777777777777774444 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.4e-07   0.00066       1      39 [.      10      47 ..      10      65 .. 0.91
   2 !    6.2   0.0    0.0036       5.3      93     198 ..      74     187 ..      54     204 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.4e-07
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnignsiyry 39
                 +IiG+GPaGl+aa+++ + +  + ++ + g+  n+ ++y
   CCE28990.1 10 LIIGGGPAGLSAALAFARQNQ-SAIVFDSGRYRNAATDY 47
                 6******************99.689*****999998888 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0036
  Pyr_redox_3  93 sfelpiklfeeVesvkk.edegfevetske.tyeAkkviiAtGefdkPnklnipGeek....lvkhyskvkefhkya.gqkvvViG...gknSavDaA 180
                  + +++i +  ++ + kk ++++fe++ + + t + +k+i+AtG      +l+ipG  +      +h  + k +++      v+ +G     n a  +A
   CCE28990.1  74 YDKIRILEGVDIVAAKKtDADSFELSDEAGqTWNGRKLILATGV--EDVMLDIPGYAElwgkSIVHCLYCKGYEQRGgSAGVLAVGplgNVNMALHIA 169
                  4567788888888888845688***99997699**********8..4555566665432221244555555554444123344443111445555555 PP

  Pyr_redox_3 181 lelvrkgaeVtvvtrgse 198
                   +  +  ++Vt++ +g+e
   CCE28990.1 170 RQETALSKRVTLYSNGNE 187
                  555555777777777665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   3.3e-07   0.00049       2      32 ..       8      38 ..       7      42 .. 0.93
   2 !    5.0   0.0    0.0057       8.5     123     163 ..      76     116 ..      67     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.3e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 d ++iGgG+AGl aA++ a+++++ ++++++
   CCE28990.1  8 DALIIGGGPAGLSAALAFARQNQSAIVFDSG 38
                 789**************************87 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0057
                  T-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 123 gvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  ++++    ++ +++k++  +f+++ + +++++ +kl+lAtG
   CCE28990.1  76 KIRILEGVDIVAAKKTDADSFELSDEAGQTWNGRKLILATG 116
                  56777778888999999999********************9 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.7e-06    0.0026       1      36 [.       8      44 ..       8      85 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.7e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36
                d +iiGGG +Gls+A++ ar++   +++++g +   +a
  CCE28990.1  8 DALIIGGGPAGLSAALAFARQNqsAIVFDSG-RYRNAA 44
                789****************997799999999.444244 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.2e-06    0.0048       1      29 [.      11      39 ..      11      63 .. 0.93
   2 ?   -3.1   0.0       6.4   9.6e+03      18      29 ..     172     186 ..     164     191 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.2e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   I+G+G +Gl+aA + a+++ +  ++++++
     CCE28990.1 11 IIGGGPAGLSAALAFARQNQSAIVFDSGR 39
                   9*************************975 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.4
                    C...TEEEEEE-SSS CS
  NAD_binding_8  18 a...gfdvlllekrd 29 
                    +    ++v+l+ +++
     CCE28990.1 172 EtalSKRVTLYSNGN 186
                    233478999998876 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.5e-06    0.0037       1      30 [.       8      37 ..       8      40 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.5e-06
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLvee 30
                  D +++GGgpaG+ AA+a ar+ ++ ++ + 
    CCE28990.1  8 DALIIGGGPAGLSAALAFARQNQSAIVFDS 37
                  679********************9998765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.7     9e-06     0.013       2      28 ..       9      35 ..       8     210 .. 0.92
   2 ?   -0.3   0.1      0.29   4.3e+02      57     150 ..     195     282 ..     148     317 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9e-06
                EEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi 28
                  +iGgG AG+ AAla ar + + + +
  CCE28990.1  9 ALIIGGGPAGLSAALAFARQNQSAIVF 35
                579****************99887776 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.29
                 HHHT-SHHHHHHHHEEEEEEESTTS-CCC-EEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA  57 dalggliikaadkagiqfrilNrskGpavralraqvdrelyskevteklenepnleiieeeveeliveekkvkgvvtedgetikakavviatGt 150
                  a+g+  +  +d+ +i+  +     G  +++   ++  e  s+ v+++l ++  ++ +e+ ++ l +e++    v+ ++  +  +   v a+G 
  CCE28990.1 195 SAFGSATAMRTDARKIKEFV----AGADGKGV--AIRFEDGSEVVEDYLAHQAPVKAREGLADLLGLEKGPNGEVKVSSPFQQASVRGVFAAGD 282
                 45566666666666662222....35555555..555566666666666666666666666666666554444454444444444455555555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00078       1.2       2      20 ..      11      29 ..      10      38 .. 0.86
   2 ?    4.6   0.0     0.019        28     122     155 ..      84     117 ..      61     118 .. 0.71
   3 ?   -3.0   0.0       4.3   6.4e+03      22      56 ..     257     292 ..     249     296 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00078
  NAD_binding_9  2 ivGaGprGlavlerLlara 20
                   i+G+Gp+Gl+++ ++++++
     CCE28990.1 11 IIGGGPAGLSAALAFARQN 29
                   9*************99996 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.019
  NAD_binding_9 122 aevvdleeradgqavlladgaslaadaVvLAlGh 155
                    + v + +++ad++++  + g+++  ++++LA+G 
     CCE28990.1  84 DIVAAKKTDADSFELSDEAGQTWNGRKLILATGV 117
                    34444455667889*9****************95 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.3
  NAD_binding_9  22 kkspleitlfdp.sepgagrvwrtdqseelllNvpa 56 
                    k+ + e+++  p +++  ++v+ + ++ ++l Nvp 
     CCE28990.1 257 KGPNGEVKVSSPfQQASVRGVFAAGDNGAMLKNVPN 292
                    556677777778656655788888888888999886 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.1e-05     0.017       2      23 ..       7      28 ..       6      42 .. 0.85
   2 ?   -2.6   0.0       1.7   2.5e+03     156     170 ..     212     226 ..     195     247 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
                   EEEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLsea 23
                   +d lI+G+GpaGl++al  +++
     CCE28990.1  7 VDALIIGGGPAGLSAALAFARQ 28
                   689*************998887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.7
                    EEEEE--GTT-HHHH CS
  FAD_binding_3 156 kYlvGaDGgrStvrk 170
                    ++++GaDG   ++r 
     CCE28990.1 212 EFVAGADGKGVAIRF 226
                    689999998776665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   5.7e-05     0.085      18      43 ..       7      31 ..       1      38 [. 0.81
   2 ?   -0.9   0.0      0.53   7.9e+02     112     126 ..     108     122 ..      80     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.7e-05
                EEEEEE--SHHHHHHHHHHHHCTTS- CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlk 43
                 D +i+G+G++GL+aa  +a++ +  
  CCE28990.1  7 VDALIIGGGPAGLSAALAFARQ-NQS 31
                6899****************99.444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.53
                 TEEEEESEEEEEEEE CS
        Thi4 112 nvkllnavaveDliv 126
                 + kl+ a+ veD+++
  CCE28990.1 108 GRKLILATGVEDVML 122
                 7799********997 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0098        15       2      33 ..       6      35 ..       5      42 .. 0.82
   2 ?    4.1   0.0     0.014        21     119     161 ..      83     120 ..      61     179 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0098
  K_oxygenase  2 ilDligiGiGpsnLsLailleevkkelkalfl 33
                 i+D  +iG Gp+ Ls a++ + ++   +a+++
   CCE28990.1  6 IVDALIIGGGPAGLSAALAFARQN--QSAIVF 35
                 7899************99999888..444555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.014
  K_oxygenase 119 veevepdeeeeeelltveskdaegeeeelearnlvlgvGtepk 161
                  v+ v  ++  + + ++++     +  ++++ r+l+l++G e  
   CCE28990.1  83 VDIVAAKKT-DADSFELSD----EAGQTWNGRKLILATGVEDV 120
                  444444443.346777774....56789999999999998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2197.35
//
Query:       CCE28991.1  [L=176]
Description: probable thioredoxin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-25   88.2   0.0    4.5e-25   87.6   0.0    1.3  1  Thioredoxin    Thioredoxin
      1e-08   35.6   0.0    1.7e-08   34.9   0.0    1.3  1  Thioredoxin_2  Thioredoxin-like domain
    6.5e-07   29.0   0.0    9.8e-07   28.4   0.0    1.3  1  OST3_OST6      OST3 / OST6 family, transporter family
    7.6e-06   26.2   0.0    4.1e-05   23.8   0.0    1.9  1  Thioredoxin_8  Thioredoxin-like
    2.7e-05   24.1   0.0    7.2e-05   22.7   0.0    1.7  2  AhpC-TSA       AhpC/TSA family
     0.0001   22.1   0.1    0.00019   21.1   0.1    1.5  1  Redoxin        Redoxin
    0.00018   21.6   0.0    0.00027   21.1   0.0    1.2  1  Thioredoxin_7  Thioredoxin-like
    0.00027   20.7   0.0    0.00036   20.3   0.0    1.2  1  Thioredoxin_9  Thioredoxin
    0.00028   20.8   0.0    0.00038   20.4   0.0    1.1  1  TraF           F plasmid transfer operon protein
     0.0095   15.6   0.0      0.027   14.1   0.0    1.7  2  Thioredoxin_5  Thioredoxin
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.018   15.0   0.0    1.3  1  HyaE           Hydrogenase-1 expression protein HyaE
      0.055   13.3   0.0      0.077   12.8   0.0    1.2  1  DIM1           Mitosis protein DIM1
       0.18   12.0   0.4          2    8.6   0.2    2.1  2  Thioredoxin_4  Thioredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   3.3e-28   4.5e-25      12      89 ..      46     124 ..      35     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 3.3e-28
                  HHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT..TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEE CS
  Thioredoxin  12 eevakekklvlveFyApwCghCkalaPeleklaeelkd..kvklakvdvdenedlakkyevegiPtlklfkngkevkkye 89 
                  + ++ ++++v+v+FyA+wC++C+a+aP++ kla++++   ++ +akv+vd+ +++ak+y+v+++Pt+++f+ng  +  ++
   CCE28991.1  46 ALLS-AATHVVVDFYADWCPPCRAIAPVFSKLADTHSRkgHIAFAKVNVDQVKNVAKRYGVSAMPTFMFFENGAPQGVTV 124
                  4444.599***************************99989*********************************9554433 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.2e-11   1.7e-08       6      91 ..      52     120 ..      48     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.2e-11
  Thioredoxin_2   6 kpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPt.ivfldgk.e 91 
                     +v+v+f++++Cp C+++  ++++l d ++r      k ++ ++ v++++ k+++             ++ygv+++Pt ++f +g  +
     CCE28991.1  52 THVVVDFYADWCPPCRAIAPVFSKLADTHSR------KGHIAFAKVNVDQVKNVA-------------KRYGVSAMPTfMFFENGApQ 120
                    79*****************************......9**************995.............9*********4446666543 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   7.1e-10   9.8e-07      46     106 ..      63     117 ..      50     146 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 7.1e-10
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkk 106
                 C +Cr ++p f+++a+ + ++       + Fakv++d+ k+v +++g++  P +++f+  +
  CCE28991.1  63 CPPCRAIAPVFSKLADTHSRK-----GHIAFAKVNVDQVKNVAKRYGVSAMPTFMFFEN-G 117
                 *****************9999.....58*****************************87.3 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0     3e-08   4.1e-05       4      56 ..      54     106 ..      52     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3e-08
                    EEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGG CS
  Thioredoxin_8   4 vlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkk 56 
                    v++ f+a+wcppc+a+ p  ++l ++++ k  + +  v++d+ ++  ++y  +
     CCE28991.1  54 VVVDFYADWCPPCRAIAPVFSKLADTHSRKGHIAFAKVNVDQVKNVAKRYGVS 106
                    89**************************9999*********987777776444 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   5.2e-08   7.2e-05      26      75 ..      52     101 ..      27     112 .. 0.80
   2 ?    1.6   0.0      0.18   2.5e+02      87     112 ..      92     111 ..      85     121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.2e-08
                 SEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTE.EEEEEESSSCHHHHH CS
    AhpC-TSA  26 kpvvlffypkdwcpvCttelpalaklyeefkergv.evigvsvdspeshkk 75 
                   vv+ fy+  wcp+C++ +p ++kl++    +g      v+vd++++++k
  CCE28991.1  52 THVVVDFYAD-WCPPCRAIAPVFSKLADTHSRKGHiAFAKVNVDQVKNVAK 101
                 579******9.****************999977642666677777776554 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.18
                 EE-TTSHHHHHTT-EETTTTECSCEE CS
    AhpC-TSA  87 lsDeegkvakaygvlkeekglalrat 112
                   D+ ++vak+ygv       a+++ 
  CCE28991.1  92 NVDQVKNVAKRYGVS------AMPTF 111
                 5799999******98......55554 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   1.4e-07   0.00019       6      85 ..      28     105 ..      24     114 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.4e-07
                 B---ECCEETTCEEEEEHHH.HTTSE.EEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHHTT- CS
     Redoxin   6 aPdftlplaatdgnsvslse.fkgkk.vvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgkegl 85 
                 +P++++ ++ +   + +l++ +   + vvv f++  +cP+C+a +p + kla+ ++ kg   +a   +n ++vk++++++g+
  CCE28991.1  28 IPELSE-NVYKIKAEGELDAlLSAAThVVVDFYAD-WCPPCRAIAPVFSKLADTHSRKG--HIAFAKVNVDQVKNVAKRYGV 105
                 555553.5555556666667666666245566666.***************99977775..568888888888888888765 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.9e-07   0.00027      10      81 ..      44     114 ..      38     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.9e-07
                    HHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---...SSEEEEE CS
  Thioredoxin_7  10 lakaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqg...vPvvafl 81 
                    l+++ +    v v+f a+wc++C+a++ +f +  +     ++++++ +v+v++ +      +++g    P+++f+
     CCE28991.1  44 LDALLSAATHVVVDFYADWCPPCRAIAPVFSKLADTHS-RKGHIAFAKVNVDQVKNVA---KRYGvsaMPTFMFF 114
                    56667777889**********************99999.99**********9999744...34335569999988 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.6e-07   0.00036      44     107 ..      53     117 ..      30     125 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.6e-07
                    EEEE.E--TT-HHHHHHHHHHHHHHHH-...TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT CS
  Thioredoxin_9  44 kilv.ltedwCgDaavnvPvlakiaeln...pnievkillrdenlelmdqyltngaraiPtliildee 107
                    +++v + +dwC+ ++++ Pv+ k+a++      i +  +  d+ +++ ++y   g  a Pt+++++++
     CCE28991.1  53 HVVVdFYADWCPPCRAIAPVFSKLADTHsrkGHIAFAKVNVDQVKNVAKRY---GVSAMPTFMFFENG 117
                    44444789*****************88711134555555555555555555...99********9886 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.7e-07   0.00038     103     204 ..      27     119 ..      22     126 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.7e-07
        TraF 103 PvsnlarkvlndarkeekeaalkklakeygLlfFyrgkcpyceaqapilqafadky....glevraVsvdgrplpelpnarvdkgqaarlgvkrtPalv 197
                 P+ +l  +v++  ++ e +a l+  a  +  + Fy+  cp c+a ap+ +++ad++    +++   V+vd+  +  +++         r+gv+ +P+++
  CCE28991.1  27 PIPELSENVYKIKAEGELDALLS--AATHVVVDFYADWCPPCRAIAPVFSKLADTHsrkgHIAFAKVNVDQVKN--VAK---------RYGVSAMPTFM 112
                 55566666666666666666665..45678889*********************99777789999999999866..777.........*********** PP

        TraF 198 lvdpksq 204
                 +++    
  CCE28991.1 113 FFENGAP 119
                 9988765 PP

>> Thioredoxin_5  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.22   3.1e+02       7      34 ..      62      89 ..      58      99 .. 0.80
   2 !   14.1   0.0     2e-05     0.027     137     179 ..      87     128 ..      72     133 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.22
  Thioredoxin_5  7 lcseCweiEpelkklkveygekiklrfi 34
                   +c+ C +i p   kl ++ ++k ++ f 
     CCE28991.1 62 WCPPCRAIAPVFSKLADTHSRKGHIAFA 89
                   8***************999998777764 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2e-05
  Thioredoxin_5 137 klakkafqcDlklakemgvtevPtlvffneneeeeglkveglk 179
                     +ak + ++  ++ak +gv+ +Pt++ff+ n   +g++vegl+
     CCE28991.1  87 AFAKVNVDQVKNVAKRYGVSAMPTFMFFE-NGAPQGVTVEGLQ 128
                    334444444458****************9.9999******987 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.3e-05     0.018      46      98 ..      69     122 ..      31     129 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
                 HCHHHHHHHCT-TTS-EEEEEE.THHHHHHHHHCCT-TSSSEEEEEETTEEEEE CS
        HyaE  46 vaVvlpEllkaFpnalraavva.dreqeealaerfgvlktPsllflrdgeylgv 98 
                  a v + l        ++a ++ + +q +++a+r+gv+ +P+++f+ +g+  gv
  CCE28991.1  69 IAPVFSKLADTHSRKGHIAFAKvNVDQVKNVAKRYGVSAMPTFMFFENGAPQGV 122
                 55566666666666666666666788999*******************998776 PP

>> DIM1  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.6e-05     0.077      22      82 ..      53     115 ..      36     122 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-05
                 EEEEEEE-TT-HHHHHHHHHHHHHHHHTTTTEEEEE..EETTT--TTSCCCTT-SSSEEEEEE CS
        DIM1  22 lvviRFGrdedaeClklDelLakiaeklknfaviyl..vdidevpdfnkmyeledpvtilffy 82 
                  vv+ F  d+ + C  +  + +k a++ ++  +i+   v++d+v++  k y ++   t +ff 
  CCE28991.1  53 HVVVDFYADWCPPCRAIAPVFSKLADTHSRKGHIAFakVNVDQVKNVAKRYGVSAMPTFMFFE 115
                 4789999*****************999999877654238999************999999994 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2    0.0014         2      12      51 ..      50      89 ..      48     108 .. 0.80
   2 ?    2.5   0.0       0.1   1.4e+02     126     146 ..      93     113 ..      87     128 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0014
                   T-SEEEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEE CS
  Thioredoxin_4 12 dApvtvieyedlrCphCakfeeeveklleeyidtGkvkfi 51
                   +A+++v+ +    Cp C++ +    kl      +G++ f 
     CCE28991.1 50 AATHVVVDFYADWCPPCRAIAPVFSKLADTHSRKGHIAFA 89
                   7999999999999******999999998887777777765 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.1
                    HHHHHHHHHHHT--SS-EEEE CS
  Thioredoxin_4 126 veaeskeakkagiestPtfii 146
                    v + ++ ak+ g+++ Ptf+ 
     CCE28991.1  93 VDQVKNVAKRYGVSAMPTFMF 113
                    55667778***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1335.98
//
Query:       CCE28992.1  [L=351]
Description: uncharacterized protein CPUR_02683 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2707.34
//
Query:       CCE28993.1  [L=943]
Description: uncharacterized protein CPUR_02684 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-32  110.2  12.6    7.4e-32  110.2  12.6    2.1  2  Uds1      Up-regulated During Septation
  ------ inclusion threshold ------
        0.3   11.0   6.8       0.34   10.8   4.5    2.1  2  FTA4      Kinetochore complex Fta4 of Sim4 subunit, or CENP-5
       0.48    8.3   2.7       0.66    7.9   2.7    1.1  1  Prominin  Prominin
        1.6    8.7   6.5       0.21   11.5   0.9    2.3  2  Stathmin  Stathmin family


Domain annotation for each model (and alignments):
>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.5       1.3     6e+03      61      87 ..     152     167 ..     125     180 .. 0.48
   2 !  110.2  12.6   1.7e-35   7.4e-32       2     127 ..     406     522 ..     405     524 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.3
        Uds1  61 yssskksakssaarsnskssreslaka 87 
                 +           ar++ + s++++ ++
  CCE28993.1 152 H-----------ARTQRSASHQTDTQT 167
                 1...........111112222222222 PP

  == domain 2  score: 110.2 bits;  conditional E-value: 1.7e-35
        Uds1   2 hlLvetAlvdsqefeiLsleeVeelkkelkaLeerlealrkkLaletklrdaarsLsrlyssskksakssaarsnskssreslakaeeelaeserkvde 100
                 + L+++Al ++++fe+L++e+V++l+kel++L+er e+lr++   + +lr+++r+L+ + +++++s       + +k+s++s++k+ee+lae+++++d+
  CCE28993.1 406 SALQKQALEQAERFEVLKVEDVDSLSKELRQLDERTEYLRQT---QESLRAGRRNLHHRICQYLRS------ARVAKFSQNSMLKQEEALAELDASIDD 495
                 579***************************************...*********************......689999********************* PP

        Uds1 101 laselekleeraaevrrrLLeHtAavL 127
                 + s+le++e+r+++vr++LLeH+Aa+ 
  CCE28993.1 496 WVSKLEQAENRRTRVRQKLLEHIAAAA 522
                 ************************985 PP

>> FTA4  Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.5   7.6e-05      0.34     100     163 ..     381     454 ..     353     491 .. 0.72
   2 ?   -1.1   0.2      0.32   1.5e+03     118     150 ..     482     514 ..     466     521 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.6e-05
        FTA4 100 eelIkeLPeswe............veekeaeeepleallerYael.rarLielserrqqlqarlarlrklkallepf 163
                 ++  +eLP+ w+            v+    +++ le+  er++ l +++  +ls++++ql +r+++lr++++ l   
  CCE28993.1 381 RRAFEELPKGWPpsdvnqklsaddVS--ALQKQALEQ-AERFEVLkVEDVDSLSKELRQLDERTEYLRQTQESLRAG 454
                 677899******99998888874433..333333444.69***995699***********************99866 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.32
        FTA4 118 eeepleallerYaelrarLielserrqqlqarl 150
                 +ee l +l ++ ++ +++L + ++rr++++++l
  CCE28993.1 482 QEEALAELDASIDDWVSKLEQAENRRTRVRQKL 514
                 444455556666777777777777777777775 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.7   0.00015      0.66     245     333 ..     424     516 ..     395     540 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00015
    Prominin 245 lenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsn.lCqs.eeCskilssleiekldtskcl..dqlpnvdevlealeevlet 333
                 +e++ + +++L+q+++ ++ Lr++++ Lr+g r+  +++ q l +    + ++ s +++++   +ld s +   ++l++ ++  +++++ l +
  CCE28993.1 424 VEDVDSLSKELRQLDERTEYLRQTQESLRAGRRNLHHRICQYLRSaRVAKfSQNSMLKQEEALAELDASIDDwvSKLEQAENRRTRVRQKLLE 516
                 57788999***********************************99888875777777777777788888887777777777777777665444 PP

>> Stathmin  Stathmin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   1.7      0.81   3.6e+03      48     104 ..     411     465 ..     379     488 .. 0.55
   2 ?   11.5   0.9   4.8e-05      0.21      40      70 ..     490     520 ..     470     523 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.81
    Stathmin  48 kKLeaAEeRRksleaqklkqlaekrekeeevlqKaaeennnfskaaeeklkqkmeas 104
                 + Le+AE R  +l+ + +  l+++  + +e +++   ++++  +a +++l+++++++
  CCE28993.1 411 QALEQAE-RFEVLKVEDVDSLSKELRQLDE-RTEYLRQTQESLRAGRRNLHHRICQY 465
                 2355553.5666666666666665544443.44445555555566666666666655 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.8e-05
    Stathmin  40 dlsleeiqkKLeaAEeRRksleaqklkqlae 70 
                 d s+++   KLe+AE+RR  + +++l+++a+
  CCE28993.1 490 DASIDDWVSKLEQAENRRTRVRQKLLEHIAA 520
                 67999**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (943 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       975  (0.0543812); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 6189.89
//
Query:       CCE28994.1  [L=273]
Description: uncharacterized protein CPUR_02685 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2017.65
//
Query:       CCE28995.1  [L=1105]
Description: uncharacterized protein CPUR_02686 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-31  108.8   0.0    6.2e-31  107.8   0.0    1.5  1  PXA       PXA domain
    5.3e-22   78.5   0.1    2.1e-21   76.6   0.1    2.1  1  Nexin_C   Sorting nexin C terminal
    5.4e-07   29.6   0.0    1.6e-06   28.1   0.0    1.8  1  PX        PX domain


Domain annotation for each model (and alignments):
>> PXA  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   0.0     1e-34   6.2e-31       2     182 .]     169     345 ..     168     345 .. 0.87

  Alignments for each domain:
  == domain 1  score: 107.8 bits;  conditional E-value: 1e-34
         PXA   2 peldeelhellalilrdfVlsWYski.ssdeeFptevrsilrsviralanrl.kk..vD.laqllltrlldlltshlrdyrqaeekvkskkaeeesdld 95 
                 pe+ ++l  l++ ++rd++++WYs+i + d++Fp ++r++l+s + +++nr+ kk  +D +++ll t+   +l + l++  +a +++  +++   + +d
  CCE28995.1 169 PETRDALCGLVDAVVRDYIKWWYSPIiPGDHSFPLACRKALNSYLLSISNRIsKKrpADaFLDLL-TNSSSILIALLSELASAFADLPPESN--MTAAD 264
                 788999*******************9777***********************6558888444554.55555666666666788887777766..59999 PP

         PXA  96 laakffalephpalsavlrdieeskeaelaylrslverlLslllppedlesetvrtlvreilanvvlkplleklsdPdfinqliikl 182
                 +  ++ a++p++ l+ +l     ++++++a +r ++e+lL  +l++ + +++++r+++reilan+vl+ +l+++s+ ++in++i++l
  CCE28995.1 265 AVYNYLASNPDSRLAILL-----NQRQQAAKFRTVAEELL-GFLDQGSRNCDPARIFLREILANSVLESTLQTCSKAEWINGWIVYL 345
                 9999**********9777.....45779************.899****************************************985 PP

>> Nexin_C  Sorting nexin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.1   3.5e-25   2.1e-21       1     111 [.     969    1085 ..     969    1086 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 3.5e-25
     Nexin_C    1 W.lrrqaltvlkqvlqqllg...dtierwlkekiek.ltseeavaslikklrdalWPdgeskaesaperseeeklrtraearklLle.llpdalvsv 91  
                  W +rr++l+++k++l+++ +    t+++++++++ + +ts+  +a  ++klr++  P  +++a+ ++e+++eek+++  +arklL++ ++p+al  v
  CCE28995.1  969 WnIRRTLLAAAKSFLLRPGNpslLTVQSLIQSSVLDaNTSDAGIATQLRKLRENTLPTAQERASWPAEMTTEEKEKLAIKARKLLIQsGVPAALMGV 1065
                  99*******************999************************************************************************* PP

     Nexin_C   92 vGrknaeealkrifellQnp 111 
                  +G++++ eal r+f++lQ +
  CCE28995.1 1066 MGQAATGEALGRVFDCLQIE 1085
                  ******************75 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   2.7e-10   1.6e-06      22     112 ..     594     683 ..     580     684 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2.7e-10
                 EEEEEEETTS.SSEEEEEEEHHHHHHHHHHHHHHHT.......TSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHHS CS
          PX  22 ylyevelktg.akewtvkRrYsdFeeLhskLlrkfp.......rvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFLev 112
                 yl++ve +++ ++ w + RrYsdF  Lh+ ++r          +    +lP+++++ +         e+ r +Le+yL+  +  + l +se +++FLe 
  CCE28995.1 594 YLIQVEPSSSaHSGWMIVRRYSDFRTLHEIIRRIATisgatafTELHKELPSWKIHTR---------ESLRGELERYLRDACWYQSLAESEGMKRFLEK 683
                 889999998899*********************9999988875555556777777765.........99****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 7560.79
//
Query:       CCE28996.1  [L=146]
Description: uncharacterized protein CPUR_02687 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-25   89.1   0.0    1.7e-25   88.4   0.0    1.4  1  PC4       Transcriptional Coactivator p15 (PC4)
  ------ inclusion threshold ------
      0.072   13.3   0.2      0.072   13.3   0.2    1.6  2  YqfQ      YqfQ-like protein


Domain annotation for each model (and alignments):
>> PC4  Transcriptional Coactivator p15 (PC4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   1.9e-29   1.7e-25       1      52 []      45      96 ..      45      96 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 1.9e-29
                ECTTCCEEEEEEEETTEEEEEEEEEEECTTEEEEEEEEEEEEHHHHHHHHHH CS
         PC4  1 welskkrrvtvrefkGktlvdIReyyekdgelkPgkKGIsLtleqweaLkka 52
                wels+krrv v++fk+++lv+IReyyekdg+++PgkKGIsL+++q++aL+ka
  CCE28996.1 45 WELSNKRRVGVSQFKNMCLVNIREYYEKDGKMLPGKKGISLSVAQYAALLKA 96
                9************************************************986 PP

>> YqfQ  YqfQ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.37   3.4e+03     132     141 ..      18      27 ..       4      46 .. 0.48
   2 ?   13.3   0.2   8.1e-06     0.072      83     128 ..      87     133 ..      65     146 .] 0.69

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.37
        YqfQ 132 kkkkpkakkk 141
                 +  +pk  kk
  CCE28996.1  18 QSVSPKVAKK 27 
                 2222222222 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 8.1e-06
        YqfQ  83 vqQYGPlvrnlPaivkilrslkssede...eteevteseevevsetees 128
                 v QY  l++ +Pai   lr+l ++ +e    ++ v+e+ + + +  ++ 
  CCE28996.1  87 VAQYAALLKAAPAINDTLRQLGQTVEEvpdTSDTVAEPIKASKA--KKP 133
                 89*******************99988622234445555544444..222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1077.27
//
Query:       CCE28997.1  [L=604]
Description: related to 4-hydroxybenzoate transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-32  111.8  59.6    2.4e-28   99.1  37.5    1.8  2  MFS_1     Major Facilitator Superfamily
    8.5e-19   67.7  24.2    2.5e-15   56.3   8.2    2.3  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
       0.37   10.5   3.3        3.2    7.4   1.7    2.2  2  FAM176    FAM176 family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1  37.5   3.9e-32   2.4e-28      14     353 .]     144     562 ..     129     562 .. 0.83
   2 !   27.1  14.1   3.1e-10   1.9e-06      39     176 ..     458     598 ..     456     603 .. 0.84

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 3.9e-32
       MFS_1  14 i..lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaal 109
                 +  ++++lp  l+ ++ is+ ++   ++++++g +++s+ +G  sd fGrr  + ++ll+++l++++ ++ ++ w  ++++ +  G+g g+++p+ +al
  CCE28997.1 144 LqgVSLTLP-SLSAAFDISEKSVRYTTSACFVGLSLGSFTWGIGSDFFGRRIPFNFTLLITSLAGMASAY-AQTWgSVCFFFAALGFGVGGSLPVDGAL 240
                 244566677.9*****************************************************666667.88888*********************** PP

       MFS_1 110 iadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafv..lfllllpeepperkrkspkeee.............. 188
                 + +  p+   ++ + lls+ + +G ++  l++ ++++++     Wr+  + +++v++ +fv  +f++ l+e+p+   +k  ++ e              
  CCE28997.1 241 FLEFLPD-ASSSLLTLLSIWWPIGQLVSSLAAWYFITNFPaeqgWRYFIVSIGLVTFAMFVlrFFVFRLFESPKFLLNKGRQD-Eavavvhgiayknst 337
                 *******.*******************************99999*****************5443333344444444444444.359999999999999 PP

       MFS_1 189 ...................................kgtgpaplvp....awkallkdpvl.....w....illialllfffgfsglltllplylqevlg 239
                                                    +g       +    +++  + +p +          +++++++++++g+ ++ ++lp y+    g
  CCE28997.1 338 ktwltsdildqvaadeaghsrsgqssppplavksaSGAI-----KekikGFSGERLKPLFenktlGmatgLIWFSWASIGMGYPLFNAFLPQYFSHNQG 431
                 999999999999999999999988777777766642222.....133333555555554444443246678**********************777777 PP

       MFS_1 240 ls................glllaglllallalvgailallagrlsdr....lgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvf 318
                  +                +  +++  +a+++++g++++lla++l+d     lgrr +l  + l+ +++++++++l++t  + + l+++ ++ f + +++
  CCE28997.1 432 QGsenggavvassetspiS-NETYRNYAITSIMGVPGSLLAAYLVDSpspfLGRRGTLAGSTLVSAIFLFLFVFLGTT--PNAQLAFSCVAAFSQNIMY 527
                 7788*************73.6666669********************8888888888888888888888888888888..9999999999999****** PP

       MFS_1 319 psllalasdlappeeagtasglfntagslggalgp 353
                 + l a++ + +p+  +g+ +g++++++ + g+++p
  CCE28997.1 528 GVLYAFTPEIFPAPVRGAGTGVASFLNRVTGLMAP 562
                 *****************************999987 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 3.1e-10
       MFS_1  39 tlyalgaavaslplGrlsd....rfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfsl 132
                 ++ ++  + +sl++++l+d     +Grr +l  + l++a++l+l++f  + + + l++ +++++ + +++ + +a++ ++fp + rg ++g++s  + +
  CCE28997.1 458 AITSIMGVPGSLLAAYLVDspspFLGRRGTLAGSTLVSAIFLFLFVFLGTTPnAQLAFSCVAAFSQNIMYGVLYAFTPEIFPAPVRGAGTGVASFLNRV 556
                 56678889999999999998888889999************44444657777799******************************************** PP

       MFS_1 133 GailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                   +++p+l++ +    g + + yi+a++ l afv +++l+p e 
  CCE28997.1 557 TGLMAPVLAANIPGD-GATTPIYIAAALILAAFV-GICLIPIET 598
                 ********9999844.577788888888888877.557877665 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   8.2   4.2e-19   2.5e-15      47     213 ..     164     330 ..     124     355 .. 0.87
   2 !   18.1   6.6   1.7e-07   0.00099     295     435 ..     459     594 ..     449     602 .. 0.74

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 4.2e-19
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHH CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyql 145
                  +  ++s+ +vG  +Gs++ g+ +d+fGR+  + ++ ++++ +++ +a a+   ++  +++    +G+gvG+   +   +  E+ p++  + l +l   
  CCE28997.1 164 SVRYTTSACFVGLSLGSFTWGIGSDFFGRRIPFNFTLLITSLAGMASAYAQ---TWGSVCFFFAALGFGVGGSLPVDGALFLEFLPDAS-SSLLTLLSI 258
                 455789*********************************************...9*****************************99875.56778999* PP

                 HHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGG...S---HHHHHHTT-HHHHHHHHHH CS
    Sugar_tr 146 aitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllf...lPESPrylvekgkeeeakevlak 213
                 ++ +G+lv++   + +  ++ +++gwr+++ +  + + ++++l++f   l ESP +l+ kg+++ea +v+  
  CCE28997.1 259 WWPIGQLVSSLAAWYFiTNFPAEQGWRYFIVSIGLVTFAMFVLRFFvfrLFESPKFLLNKGRQDEAVAVVHG 330
                 *************9994555559******************9998833347***************998765 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.7e-07
                 HHHHHHHHHHHHHHHHHHH....S-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHH CS
    Sugar_tr 295 ivgvvnfvatfvaiflvdr....fGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskala 389
                 i++++ +  ++ a++lvd     +GRR   l G++  ++ f++l   ++l+++      ++ ++f ++ ++  ++ + +v++   +E+fp  vR++++ 
  CCE28997.1 459 ITSIMGVPGSLLAAYLVDSpspfLGRR-GTLAGSTLVSAIFLFLF--VFLGTTP-----NAQLAFSCVAAFSQNI-MYGVLYAFTPEIFPAPVRGAGTG 548
                 6777888888899999995444489**.77788888888888886..7888877.....4566666665444444.445777888************** PP

                 HHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 390 iavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvff 435
                 +a ++n +  +   +l   i +    +++++  a ++++f+ ++++
  CCE28997.1 549 VASFLNRVTGLMAPVLAANIPGDGATTPIYIAAALILAAFVGICLI 594
                 ****999888888888777777777777777777777777666654 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.7   0.00054       3.2      45      92 ..      31      81 ..      17     101 .. 0.53
   2 ?    2.3   0.0      0.02   1.2e+02       6      43 ..     266     301 ..     263     322 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00054
      FAM176 45 iscrkdlerlkkkkkklkeeseka...sededeeeeeeeedsseseaeeel 92
                is r+d +r++ ++++++ ++ ++      e+eeeee ++ +se+ea  ++
  CCE28997.1 31 ISARSDRTRSDSRRQDRRADDLESaatAAAEEEEEEEMKNADSEAEAMLQM 81
                777777775554444444433333232222333333333333333333333 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.02
      FAM176   6 SnslaayayikenpEraaL.lFvlgvcvGLlltLcllvi 43 
                  +slaa+ +i++ p + +  +F++  ++GL+ t+++ v+
  CCE28997.1 266 VSSLAAWYFITNFPAEQGWrYFIV--SIGLV-TFAMFVL 301
                 3589********997776527875..56775.5555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1174  (0.0654805); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 4220.96
//
Query:       CCE28998.1  [L=361]
Description: related to chaperone protein DNAJ [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-12   45.5   0.2    1.3e-11   44.4   0.1    1.6  2  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.1   7.5e-16   1.3e-11       2      63 .]      77     140 ..      76     140 .. 0.90
   2 ?   -3.4   0.0      0.64   1.1e+04      30      38 ..     271     279 ..     268     293 .. 0.69

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 7.5e-16
                 HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH..HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdp..eaeekFkeineAyevLsdpekRkqYD 63 
                 +Y+ L v+ +a++ eIk+++r+la  +HPDk  ++    ++  F  ++ A ++L+d+ kR +Y+
  CCE28998.1  77 FYADLSVPITATDREIKSRFRRLAAVHHPDKTGSEAaaASAAYFIHLKLASDTLQDAAKRFAYE 140
                 8999****************************66655566669*****************9995 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.64
                 TTTSCCHHH CS
        DnaJ  30 PDknpkdpe 38 
                 PDk  +d+e
  CCE28998.1 271 PDKTGGDNE 279
                 898866653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2617.94
//
Query:       CCE28999.1  [L=319]
Description: uncharacterized protein CPUR_02690 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.11   13.0   0.0       0.21   12.1   0.0    1.4  1  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.2e-05      0.21      50     113 ..      13      75 ..       6      76 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.2e-05
  SNARE_assoc  50 llsekrvkalerlverygflallllrllpivPrdlvnyvaGltrvsfkrFflatfiGsipwalv 113
                   l+e +  a+++++ ++ + all+  +lp+   +++++  G  ++  +r+  +tfiGs   a+v
   CCE28999.1  13 SLEEIYNTAFQEFLAQKWWPALLWTSFLPFT-ATILAACNGHYELCQRRYSEVTFIGSHNSAFV 75 
                  566777788********************98.*************************9877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2446.68
//
Query:       CCE29000.1  [L=470]
Description: uncharacterized protein CPUR_02691 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-16   60.7   0.0    2.2e-16   60.0   0.0    1.2  1  CDH-cyt          Cytochrome domain of cellobiose dehydrogenas
  ------ inclusion threshold ------
      0.036   13.6   1.9      0.065   12.7   1.9    1.3  1  DUF1129          Protein of unknown function (DUF1129)
        1.2    8.5   4.0        5.7    6.4   0.4    2.2  2  DUF3087          Protein of unknown function (DUF3087)
        1.4    8.9   7.8        4.2    7.3   1.5    2.4  2  RseC_MucC        Positive regulator of sigma(E), RseC/MucC
        2.9    7.4   8.6        8.2    5.9   8.6    1.7  1  BaxI_1           Bax inhibitor 1 like
        5.6    6.7   0.0        5.6    6.7   0.0    3.1  3  Lysis_col        Lysis protein
        9.3    6.1   5.9        2.9    7.7   0.2    2.5  2  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l


Domain annotation for each model (and alignments):
>> CDH-cyt  Cytochrome domain of cellobiose dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   8.8e-20   2.2e-16      12     175 ..      33     200 ..      23     205 .. 0.86

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 8.8e-20
                 EETT-SS-EEEEEEB-CCC..TS--SEEEEEEEEE-GCS--EEEEESS.SSSCTSEEEEEEEE..TTEEEEEEEEBSSSSS-EE--SS-EEEEEE..EE CS
     CDH-cyt  12 tytdeaggftfgialPeda..ttdatefigqlvaplsakagWaGislg.gsMtnnlLlvaWpn..gnevvtSfrlatgyasPevytgdakltqls.gts 104
                 t+ + ++ ++f + +Pe++  + +  +f  + ++p++    W++++lg  +M+++l l+++++  g +v+ S+r+a + ++P++   d+++ +++ +t 
  CCE29000.1  33 TFISPDNHVAFAFTVPETEdfKYPDATFFSL-RVPNK--YSWGAVGLGsDDMKGALYLIIYQSedGRNVTFSPRMAYDNSEPTYW-PDMEYAVVEnSTG 127
                 55667899***********965555556555.****8..*********666**********998899****************99.************* PP

                 E-SSEEEEEEEEE.T-SEEE.ETTEEEE--TT.TEEEEEEEEESS--BSTTSCCCB-----SEEEEEEEE--CC CS
     CDH-cyt 105 vnathftltfrCq.gClswe.qggtsgsasts.snlvlgwAqskkaptnpaspdstlsqHdngfgqfgadlsaa 175
                 + ++ + +t+ C+  C sw+  +++ g  ++s  ++   +A+  ++   ++++ + l++H++ +g f++d+   
  CCE29000.1 128 IFDDYMYFTAMCTaHCRSWNrRDTNGGWLDVSsPSQKAIYAIGPSESLMSNDQRAPLKFHQE-YGVFSIDMGRT 200
                 ************847****7566666666665577789********9999999*********.*******9875 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.9   2.5e-05     0.065      78     192 ..     261     381 ..     255     396 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
     DUF1129  78 wlmalDnsLlllalfall.fgilalfskkkqtas...iGlitlllvalvgGlamvlvyrlltrekkkkkrpplwkrllilllllvvwlvl...ftlval 169
                 +++al +s   l++++ l  gil+ f+ + +        ++ +l+va++ G + + v + ++   +k++ p+++ r+ + ++ ++++++l   f+ +al
  CCE29000.1 261 KWHALNQSIATLGVLSGLvLGILTSFHYNRSRGFahyHQILGYLIVAFILGQLGLGVKHHIEY--RKTQTPSIFGRIHVWTGRVILFFALmnaFFGFAL 357
                 6899********99996527******9987765456799************998888888875..7888888888777776665555554111666666 PP

     DUF1129 170 .lpaviNpvLpplvliiigviafv 192
                    + +  vL  l l++ g++ ++
  CCE29000.1 358 aQNKRFAMVLIGLLLAACGIALIF 381
                 455567777777777766665543 PP

>> DUF3087  Protein of unknown function (DUF3087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.3     0.021        54      11      66 ..     230     284 ..     221     297 .. 0.74
   2 ?    6.4   0.4    0.0022       5.7      10      73 ..     322     387 ..     317     392 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.021
     DUF3087  11 Yrkklnrvivalvallavlsllfstllialfgeeevs..nfhlnllGvvlalvltaai 66 
                 Y+  l     ++++++++  + f+ +l+ + g ++ +  n  +  lGv+ +lvl ++ 
  CCE29000.1 230 YKATL---HGTFMIFFIIGMMNFGVVLLRVCGWAKWHalNQSIATLGVLSGLVLGILT 284
                 44433...456889999999***********988777567778889999999986655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0022
     DUF3087  10 rYrkklnrvivalvallavlsllfstllialfg..eeevsnfhlnllGvvlalvltaailrklktk 73 
                 +Yrk    +i + + + +   +lf +l+ a+fg   ++++ f + l+G +la++ +a+i +  +++
  CCE29000.1 322 EYRKTQTPSIFGRIHVWTGRVILFFALMNAFFGfaLAQNKRFAMVLIGLLLAACGIALIFMLGRKH 387
                 79999999999999999999************944455669************9999988776665 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.6      0.01        26      78     117 ..     247     291 ..     229     302 .. 0.69
   2 ?    7.3   1.5    0.0016       4.2      75     127 ..     344     397 ..     342     399 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.01
   RseC_MucC  78 lilgallgsall.....gssellaalgallglvlgflivrllskr 117
                 + +g++l  +++     + ++ +a lg l glvlg+l   +++++
  CCE29000.1 247 MNFGVVLLRVCGwakwhALNQSIATLGVLSGLVLGILTSFHYNRS 291
                 3333344333336677799*****************998888776 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0016
   RseC_MucC  75 llllilgallgsallgssellaalgallglvlgflivrllskr.lkkkskfqpv 127
                 l++ ++ a++g al++++ ++ +l++ll+++ g+ ++ +l ++ +  k++fqpv
  CCE29000.1 344 LFFALMNAFFGFALAQNKRFAMVLIGLLLAACGIALIFMLGRKhFFPKRQFQPV 397
                 56777788888888899*****************99998876636677788886 PP

>> BaxI_1  Bax inhibitor 1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   8.6    0.0032       8.2      33     155 ..     247     384 ..     207     400 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0032
      BaxI_1  33 llgvlvvtavvtwflvlaaaaalllvgalvglvlalvasfkkkvspalvllYAvleGlflG........gislvfea.........pgivvqAvlgT.. 112
                 + + +v+  v  w+   a +++++++g+l glvl++++sf  + s+ ++  + +l  l+++        g+               p i     + T  
  CCE29000.1 247 MNFGVVLLRVCGWAKWHALNQSIATLGVLSGLVLGILTSFHYNRSRGFAHYHQILGYLIVAfilgqlglGVK----HhieyrktqtPSIFGRIHVWTgr 341
                 22234444555555555555669*****************98888886665555544444422223333444....24445889998888776555533 PP

      BaxI_1 113 lgvfavmlvlYktgairvtpkftkivvaaligilllylvnlvl 155
                 +++f++++ ++   a+  +++f+ ++++ l++ + ++l+ ++ 
  CCE29000.1 342 VILFFALMNAFFGFALAQNKRFAMVLIGLLLAACGIALIFMLG 384
                 7778888888888899999********9999999999987765 PP

>> Lysis_col  Lysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0022       5.6      13      41 ..     134     162 ..     128     169 .. 0.85
   2 ?   -3.2   1.4       2.8   7.1e+03      10      22 ..     245     257 ..     238     258 .. 0.65
   3 ?    2.5   1.3     0.046   1.2e+02      10      24 ..     363     377 ..     362     381 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0022
   Lysis_col  13 ifsifLLvACQvNyvRDvqGGtVaPSSss 41 
                  f  +  + C   + RD++GG    SS s
  CCE29000.1 134 YFTAMCTAHCRSWNRRDTNGGWLDVSSPS 162
                 688899999************88777765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.8
   Lysis_col  10 FilifsifLLvAC 22 
                  ++ f+++LL  C
  CCE29000.1 245 GMMNFGVVLLRVC 257
                 2457999999888 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.046
   Lysis_col  10 FilifsifLLvACQv 24 
                 F+++  ++LL+AC +
  CCE29000.1 363 FAMVLIGLLLAACGI 377
                 899999*******75 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2    0.0011       2.9      24      56 ..     258     291 ..     255     298 .. 0.84
   2 ?   -0.6   1.5      0.44   1.1e+03      24      47 ..     351     377 ..     347     384 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0011
  Phage_holin_2_4  24 sfaGflasselialvGlavA.liGlLvnWyYkre 56 
                      + a + a ++ ia +G++   ++G+L +++Y r 
       CCE29000.1 258 GWAKWHALNQSIATLGVLSGlVLGILTSFHYNRS 291
                      56678899*********987257********996 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.44
  Phage_holin_2_4  24 sfaGflasse...lialvGlavAliGl 47 
                      +f+Gf ++++   ++ l+Gl++A  G+
       CCE29000.1 351 AFFGFALAQNkrfAMVLIGLLLAACGI 377
                      899998877645456788999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3569.78
//
Query:       CCE29001.1  [L=252]
Description: related to DAL3-ureidoglycolate hydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-58  196.4   0.0    4.6e-58  196.1   0.0    1.0  1  Ureidogly_lyase  Ureidoglycolate lyase


Domain annotation for each model (and alignments):
>> Ureidogly_lyase  Ureidoglycolate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.0   2.6e-62   4.6e-58       2     186 ..      12     229 ..      11     230 .. 0.94

  Alignments for each domain:
  == domain 1  score: 196.1 bits;  conditional E-value: 2.6e-62
  Ureidogly_lyase   2 krikiepLtkeaFapFGdvieape.........eakkappesvaiNqgtalkyhdlaelenays..pskkearavislfrcaprelpake...e 81 
                      +r+++epLt++aF+pFG+vi++p+         + ++ p+++v++Nqg a++y ++a+++n+y+  ps  ea++++s+f+c++r+l + +    
       CCE29001.1  12 IRVTAEPLTQDAFSPFGSVISNPRpdvhpssasSCTSLPANAVSANQGFAIQYRHVAPIKNLYDqaPSGVEATPIMSMFVCSARQLLHIDddpA 105
                      5899******************99****998875566699************************9*********************96668999 PP

  Ureidogly_lyase  82 kklldvkilErHpftsQtFvPlglsskekaylvvVAptlk..................rglpdlkklraFvakgaqaVtygagvWHaplvvlg. 156
                      + +++v+ilErHpft+QtF Pl +    +aylv+VAp+l+                  rglpdl+ lraF+a+gaqaV ygag+WHap+vvlg 
       CCE29001.1 106 HDIFPVRILERHPFTTQTFSPLASTA--RAYLVIVAPSLPpreekvrlpvpvgqglpgRGLPDLRGLRAFMATGAQAVVYGAGTWHAPMVVLGr 197
                      9*********************9833..69********999****************************************************6 PP

  Ureidogly_lyase 157 .dkpidFvvvq.adrvaeedceevlleeelav 186
                        +++dFvv q a +v  edc+ v l+e+ +v
       CCE29001.1 198 eGTTLDFVVSQfASGVPIEDCQIVELGEGAEV 229
                      56789*******************99997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2016.00
//
Query:       CCE29002.1  [L=322]
Description: uncharacterized protein CPUR_02693 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0024   18.0   0.9          2    8.7   0.1    2.4  2  LigT_PEase       LigT like Phosphoesterase
  ------ inclusion threshold ------
      0.013   15.4   1.8      0.026   14.4   1.8    1.5  1  2_5_RNA_ligase2  2'-5' RNA ligase superfamily


Domain annotation for each model (and alignments):
>> LigT_PEase  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1   0.00023         2       4      63 ..      99     154 ..      97     171 .. 0.71
   2 !    7.5   0.1    0.0005       4.5      14      50 ..     219     258 ..     215     271 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00023
                 CHHHHHHHHHHHHHHHHHHCCTTEEETSGGGSEEEEEEEEEESHHHHHHHHHHHHHHHHT CS
  LigT_PEase   4 peeiaeelarlaaeleralaklglkpvrpfnpHiTLaflgevdeekvpellealaeiasg 63 
                 p++i + + rl++ l+    ++g+ +++p+++H+T+  +     ++ +e+ +++a++   
  CCE29002.1  99 PNHIIRLACRLQEILQ--DTAPGVWLMPPDRMHMTVLEVAF--SKTPQEIASQVATLRDA 154
                 5666666667888888..556777777*********99987..55666666666666444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0005
                 HHHHHHHHHCCTTEEET...SGGGSEEEEEEEEEESHHHH CS
  LigT_PEase  14 laaeleralaklglkpv...rpfnpHiTLaflgevdeekv 50 
                 l++e+ ++++++gl+++   +    HiTL++  + ++++ 
  CCE29002.1 219 LRREVFDKVQGAGLQVEsryQVPSAHITLGRFLDERDHDT 258
                 78899999999******63333446****99877664444 PP

>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.8   2.9e-06     0.026      22     129 ..     124     263 ..      98     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.9e-06
  2_5_RNA_ligase2  22 prwppHitLlypfvededladlaellsrlak.......................etepfevrldgfgvFehkksvvylsv........sdseal 84 
                      p +++H+t+l   + +   +++a+++++l                         +t++f +++  +++ ++ + + ++ +         d  + 
       CCE29002.1 124 PPDRMHMTVLEVAFSKTP-QEIASQVATLRDaipaitshthlhrarlvkpmisyDTSAFALSFLPASREPRVSPAPTAPDvpaktitqGDAYTY 216
                      67889*******999986.999999999999888888888888888888888888888888887777755444466666688888899999*** PP

  2_5_RNA_ligase2  85 qalraallealpeagdkeds..geftPHlTiaqsadstsaaellekl 129
                      ++lr+++ ++++ ag++++s  +    H+T+++  d+++++   +++
       CCE29002.1 217 HHLRREVFDKVQGAGLQVESryQVPSAHITLGRFLDERDHDTPEKRV 263
                      ******************998888899************95444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2570.13
//
Query:       CCE29003.1  [L=106]
Description: probable RPL42B-ribosomal protein L36a.e [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-36  123.8  14.0    4.4e-36  123.2  14.0    1.3  1  Ribosomal_L44  Ribosomal protein L44


Domain annotation for each model (and alignments):
>> Ribosomal_L44  Ribosomal protein L44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2  14.0   2.5e-40   4.4e-36       1      76 []      19      94 ..      19      94 .. 0.99

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 2.5e-40
                   EEEEEEEEE-------SSSHHHHHHHH.H-SSSGGGGS----.--SSBB--EEEEETTT--EEE----BBS--EEE CS
  Ribosomal_L44  1 kHtehkveqykkgkdselaqgkRrydrkqsgygGqtkpvfkkkaKttKKivlrleCteCkkkrlkalkRakkfelv 76
                   kHt+hkv+qyk+gk+s +aqgkRrydrkqsgygGqtkpvf+kkaKttKK+vlrleC++Ck+k ++alkR+k+fel+
     CCE29003.1 19 KHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVKCKTKCQLALKRCKHFELG 94
                   8*************************************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 784.67
//
Query:       CCE29004.1  [L=294]
Description: related to coatomer epsilon subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-60  205.3   6.5    1.5e-60  205.1   6.5    1.0  1  Coatomer_E       Coatomer epsilon subunit
    4.9e-08   33.4  17.9    0.00025   21.5   2.6    4.5  4  TPR_19           Tetratricopeptide repeat
    5.9e-08   32.3   1.2     0.0029   16.9   0.0    2.5  2  TPR_15           Tetratricopeptide repeat
    7.8e-07   29.2   0.2      0.093   13.0   0.2    3.3  3  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    9.8e-06   25.8   8.8     0.0033   17.7   0.9    4.7  4  TPR_12           Tetratricopeptide repeat
     0.0035   17.4   0.5       0.44   10.9   0.0    3.8  3  TPR_8            Tetratricopeptide repeat
     0.0064   16.3   0.8       0.34   10.8   0.1    3.5  4  TPR_1            Tetratricopeptide repeat
     0.0083   16.7  14.0       0.16   12.6   0.5    5.6  6  TPR_4            Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.8   0.1      0.011   15.8   0.1    4.3  6  TPR_2            Tetratricopeptide repeat
       0.04   14.6   1.5        2.5    8.9   0.0    4.3  4  TPR_6            Tetratricopeptide repeat
      0.065   12.9   1.3       0.28   10.9   0.1    2.7  3  TPR_11           TPR repeat
       0.11   13.2  10.7       0.67   10.7   0.5    3.8  4  TPR_16           Tetratricopeptide repeat
       0.12   13.3  11.9       0.54   11.2   0.3    5.5  6  TPR_14           Tetratricopeptide repeat
       0.13   12.8   0.9         33    5.1   0.1    2.9  3  ATP-cone         ATP cone domain
       0.14   12.2   0.3       0.14   12.2   0.3    2.6  2  Pro_Al_protease  Alpha-lytic protease prodomain
       0.54   10.5   4.3       0.73   10.0   0.5    3.1  3  TPR_9            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Coatomer_E  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.1   6.5   1.4e-63   1.5e-60       4     289 ..       9     288 ..       6     289 .. 0.95

  Alignments for each domain:
  == domain 1  score: 205.1 bits;  conditional E-value: 1.4e-63
                 TTHHHHHHHHTT-HHHHHHHHHS---SHHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-HHHHHHHHHHHHHH-STTHHHHHHHHHHHHHS----S-H CS
  Coatomer_E   4 eLfdvrnefYlGaYqkaineadvaslseeekeerdvylyrsylAlgsaqiviseIkesaatelqAvrllaeylnspsrkeeilaelkeeladseiesne 102
                 eL ++ n+f+ G Y +++ + d++  s+e++    v++ r+ +Alg+a+ v+ e+k ++ ++l  + ++ae      +++ +l+ +++ la+s+   n 
  CCE29004.1   9 ELINIHNHFHQGQYDQVV-DFDTSAFSAENALPARVLVLRARIALGQAEDVLAEVKGESEPDLEVIGAFAEHTLG--NTDVALETVEK-LASSAA-DNV 102
                 799***************.799*************************************************9999..89999999865.555555.488 PP

                 HHHHHHHHHHHHTT-HHHHHHHHTT-.-SHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHS--- CS
  Coatomer_E 103 vlrllaaivflkegdfddalkllkks.enLeavAlkvqillklhrvdlAekelkkmqdidedatltQLAqawvklavggekiqdAyyifqelsekykst 200
                 ++++++++v+  +g++++al ll++  ++LeavAl vqi+l  +r+dlA ke+  ++ +++d  l  LA++wv l vggek+q+A+y+f+el++  + t
  CCE29004.1 103 TVQVIGGTVLQAAGKSEAALALLSQHqGSLEAVALIVQIHLEQNRTDLALKEVVSARSWAQDSLLVNLAESWVGLRVGGEKYQQAFYVFEELAQA-PAT 200
                 9***********************9989*****************************************************************99.666 PP

                 HHH..HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHHHH CS
  Coatomer_E 201 pll..lngkAvvslllgryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkdaevsernlsqlklshpehklvkdlnekeaeFdrlvlqf 289
                   +  l  +Av++l+lgr eeA+  L+eaL+kd ++ ++++N++v+    g+d    +++++ lk++ p+h+l  d++ek+a Fd+++  +
  CCE29004.1 201 ASIrsLVSQAVCELHLGRLEEAQAALEEALNKDGQNVDAIANMLVLQVASGRD---DSQYVELLKKADPKHQLLVDMEEKSALFDQAAMRY 288
                 6553489**********************************************...899***************************99876 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.65   7.3e+02       4      43 ..      19      57 ..      16      69 .. 0.70
   2 ?    3.9   0.1     0.068        76       7      57 ..      52     100 ..      46     105 .. 0.83
   3 !   15.3   1.5     2e-05     0.022       3      57 ..     114     164 ..     112     171 .. 0.91
   4 !   21.5   2.6   2.2e-07   0.00025       6      58 ..     183     236 ..     179     248 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.65
      TPR_19  4 egdyaeAlalleqalqedpknaearllLAeallalgqlde 43
                +g+y++ +++ ++a+++++  + ar l  +a +algq ++
  CCE29004.1 19 QGQYDQVVDFDTSAFSAEN-ALPARVLVLRARIALGQAED 57
                7777777777777766644.55566666777777777765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.068
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 + +A + l+++  e+  ++e+    A a   lg++d A +++++l  +++d
  CCE29004.1  52 LGQAEDVLAEVKGESEPDLEVIG--AFAEHTLGNTDVALETVEKLASSAAD 100
                 56788888888777777999999..9999999***********99999988 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 2e-05
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 a+g+ ++Alall+q      +++ea +l ++++l+++++d A + +  +  +++d
  CCE29004.1 114 AAGKSEAALALLSQ----HQGSLEAVALIVQIHLEQNRTDLALKEVVSARSWAQD 164
                 799***********....9*************************99999999998 PP

  == domain 4  score: 21.5 bits;  conditional E-value: 2.2e-07
      TPR_19   6 dyaeAlalleqalqedpknaearllL..AeallalgqldeAealLdalpeedpdd 58 
                 +y++A   +e+ l+++p  a +r l   A + l lg+l+eA+a+L++++++d ++
  CCE29004.1 183 KYQQAFYVFEE-LAQAPATASIRSLVsqAVCELHLGRLEEAQAALEEALNKDGQN 236
                 8**********.7999********7799***********************9984 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.6e-06    0.0029     201     270 ..      57     124 ..      33     132 .. 0.87
   2 !   13.6   0.3   2.5e-05     0.028     141     210 ..     196     265 ..     179     279 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.6e-06
      TPR_15 201 ellkawkaraesdasLwgplaaAlllLgrpkkALeylrkqakenrkdplwllaYADaleqagradeAwrl 270
                  +l++ k++  s+++L    a+A  +Lg+++ ALe ++k a++ ++++ +++    +l++ag+ ++A +l
  CCE29004.1  57 DVLAEVKGE--SEPDLEVIGAFAEHTLGNTDVALETVEKLASSAADNVTVQVIGGTVLQAAGKSEAALAL 124
                 466666666..88999999999********************************************9876 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.5e-05
      TPR_15 141 a..aeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkara 210
                 +  a  s + l+  a  ++  g+ ++A  +++eAl++++++ +++a++l l + +gr+++  ++++ +k++ 
  CCE29004.1 196 QapATASIRSLVSQAVCELHLGRLEEAQAALEEALNKDGQNVDAIANMLVLQVASGRDDS--QYVELLKKAD 265
                 3236678888999999999****************************************7..8888887765 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.015        17      33      77 ..      16      60 ..       2      64 .. 0.90
   2 !    6.8   0.0    0.0071       7.9       4      75 ..      83     151 ..      80     156 .. 0.79
   3 !   13.0   0.2   8.3e-05     0.093      38      81 ..     183     228 ..     181     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.015
                HHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHH CS
      ANAPC3 33 lylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAia 77
                ++++gqy++  ++  +a ++++ l +r+l  ++ ++L++ e+ +a
  CCE29004.1 16 HFHQGQYDQVVDFDTSAFSAENALPARVLVLRARIALGQAEDVLA 60
                9************99999*******************99888765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0071
                 -HHHHHHHHHHHH.HHH--HHHHHHH.HHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHH CS
      ANAPC3   4 nyknAiflaerllaaetespedayll.AlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeA 75 
                 n++ A+   e+l  +++ ++  +    + +l  +g+ + A+ ll+++     sl++  l+ q  l++++ + A
  CCE29004.1  83 NTDVALETVEKLA-SSAADNVTVQVIgGTVLQAAGKSEAALALLSQH---QGSLEAVALIVQIHLEQNRTDLA 151
                 7788999999999.5555555555545********************...78888888888888888877665 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 8.3e-05
                 -HHHHHHHHHCTSHHHC-H..HHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  38 qykrAyellrkaklnsksl..gcrylfAqcllkLkkyeeAiaaLek 81 
                 +y++A+++++++ +++ +   ++++  A c l L+++eeA aaLe+
  CCE29004.1 183 KYQQAFYVFEELAQAPATAsiRSLVSQAVCELHLGRLEEAQAALEE 228
                 7999999999995555555235555566888899999999999987 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.037        42      13      54 ..      16      55 ..      11      60 .. 0.91
   2 ?    4.2   0.2     0.047        53      52      69 ..     109     126 ..      73     134 .. 0.66
   3 ?   -0.4   0.2       1.3   1.4e+03      41      65 ..     128     152 ..     120     164 .. 0.68
   4 !   17.7   0.9     3e-06    0.0033      26      73 ..     184     231 ..     180     233 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.037
      TPR_12 13 lrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrl 54
                ++++g+yd+  ++   a  + ++l  p + l+++++++Lg++
  CCE29004.1 16 HFHQGQYDQVVDFDTSAFSAENAL--PARVLVLRARIALGQA 55
                799******************999..9999*********997 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.047
      TPR_12  52 grlyralgryeeAlelle 69 
                 g++++a+g+ e+Al+ll 
  CCE29004.1 109 GTVLQAAGKSEAALALLS 126
                 556777888888887775 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.3
      TPR_12  41 hpltattlrnLgrlyralgryeeAl 65 
                 h + +++   + +++++++r++ Al
  CCE29004.1 128 HQGSLEAVALIVQIHLEQNRTDLAL 152
                 4555555555566777777777776 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 3e-06
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 +++a  ++++l      + +++l   + + + lgr+eeA+++leeal+
  CCE29004.1 184 YQQAFYVFEELAQAPATASIRSLVSQAVCELHLGRLEEAQAALEEALN 231
                 888888888883333344455555555556788999999999999985 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.46   5.2e+02      12      33 ..      79     100 ..      75     101 .. 0.85
   2 ?   -0.2   0.0       1.4   1.6e+03       3      21 ..     134     152 ..     132     154 .. 0.82
   3 !   10.9   0.0   0.00039      0.44       5      28 ..     207     230 ..     203     235 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.46
                 HHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekaleldpd 33 
                 ++lg+ + A e+ ek  + + d
  CCE29004.1  79 HTLGNTDVALETVEKLASSAAD 100
                 689************9887776 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHTT-HHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAk 21 
                 a  ++ +i+l++++ + A 
  CCE29004.1 134 AVALIVQIHLEQNRTDLAL 152
                 6678999********9996 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00039
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekal 28 
                 +  + + l lg++eeA++++e+al
  CCE29004.1 207 VSQAVCELHLGRLEEAQAALEEAL 230
                 555666688**************8 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.33   3.7e+02      11      21 ..      16      26 ..      15      28 .. 0.83
   2 ?   -1.3   0.0         2   2.2e+03       8      23 ..     109     124 ..     109     127 .. 0.80
   3 ?   -1.4   0.0       2.2   2.5e+03      10      22 ..     141     153 ..     140     153 .. 0.86
   4 !   10.8   0.1    0.0003      0.34       4      31 ..     206     233 ..     203     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.33
                HHHTT-HHHHH CS
       TPR_1 11 yfklgkydeAl 21
                +f++g+yd+ +
  CCE29004.1 16 HFHQGQYDQVV 26
                699*****966 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2
                 HHHHHHTT-HHHHHHH CS
       TPR_1   8 GnayfklgkydeAley 23 
                 G +++  gk + Al+ 
  CCE29004.1 109 GTVLQAAGKSEAALAL 124
                 6788999999999986 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.2
                 HHHHTT-HHHHHH CS
       TPR_1  10 ayfklgkydeAle 22 
                 +++++++ d Al+
  CCE29004.1 141 IHLEQNRTDLALK 153
                 7899*****9996 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.0003
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALeln 31 
                 l   +++ ++lg+++eA ++ e+AL  +
  CCE29004.1 206 LVSQAVCELHLGRLEEAQAALEEALNKD 233
                 55679999****************9655 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       2.2   2.4e+03      11      19 ..      16      24 ..      14      27 .. 0.86
   2 ?    0.6   0.3       1.1   1.2e+03       2       9 ..      47      54 ..      41      61 .. 0.62
   3 ?   -0.9   0.0       3.4   3.8e+03       8      25 ..      75      92 ..      75      93 .. 0.82
   4 !    7.3   0.1     0.008         9       9      24 ..     110     125 ..     109     127 .. 0.89
   5 ?   -2.0   0.0       7.7   8.6e+03      10      21 ..     141     152 ..     139     152 .. 0.81
   6 !   12.6   0.5   0.00015      0.16       3      26 .]     205     228 ..     203     228 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 2.2
       TPR_4 11 llalGdlde 19
                ++++G++d+
  CCE29004.1 16 HFHQGQYDQ 24
                789****98 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.1
       TPR_4  2 rallaLAr 9 
                ra++aL++
  CCE29004.1 47 RARIALGQ 54
                44555554 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3.4
       TPR_4  8 ArallalGdldeAralle 25
                A a + lG+ d A++++e
  CCE29004.1 75 AFAEHTLGNTDVALETVE 92
                5677999**999999887 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.008
       TPR_4   9 rallalGdldeArall 24 
                  +l+a+G +++A+all
  CCE29004.1 110 TVLQAAGKSEAALALL 125
                 689************9 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 7.7
       TPR_4  10 allalGdldeAr 21 
                  +l++ + d A+
  CCE29004.1 141 IHLEQNRTDLAL 152
                 689999999885 PP

  == domain 6  score: 12.6 bits;  conditional E-value: 0.00015
       TPR_4   3 allaLArallalGdldeAraller 26 
                  l+ +A   l+lG+l+eA+a+le+
  CCE29004.1 205 SLVSQAVCELHLGRLEEAQAALEE 228
                 6677888999************97 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       1.1   1.2e+03      11      19 ..      16      24 ..      14      27 .. 0.86
   2 ?   -1.9   0.0       4.4   4.9e+03      13      27 ..      80      94 ..      75      98 .. 0.76
   3 ?   -2.0   0.0       4.8   5.3e+03       9      24 ..     110     125 ..     109     127 .. 0.73
   4 ?   -1.9   0.0       4.7   5.2e+03      10      22 ..     141     153 ..     140     155 .. 0.85
   5 ?   -1.8   0.5       4.2   4.7e+03      16      27 ..     183     194 ..     182     196 .. 0.80
   6 ?   15.8   0.1   9.7e-06     0.011       7      33 ..     209     235 ..     204     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1.1
       TPR_2 11 yyklgdyee 19
                ++++g+y++
  CCE29004.1 16 HFHQGQYDQ 24
                89*****96 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.4
       TPR_2 13 klgdyeeAleafekA 27
                 lg+ + Ale  ek 
  CCE29004.1 80 TLGNTDVALETVEKL 94
                689999999987775 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.8
       TPR_2   9 layyklgdyeeAleaf 24 
                  ++ ++g+ e Al+++
  CCE29004.1 110 TVLQAAGKSEAALALL 125
                 5677888888888876 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 4.7
       TPR_2  10 ayyklgdyeeAle 22 
                 +++++++ + Al+
  CCE29004.1 141 IHLEQNRTDLALK 153
                 7999999999997 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 4.2
       TPR_2  16 dyeeAleafekA 27 
                 +y++A   fe+ 
  CCE29004.1 183 KYQQAFYVFEEL 194
                 799999999986 PP

  == domain 6  score: 15.8 bits;  conditional E-value: 9.7e-06
       TPR_2   7 lGlayyklgdyeeAleafekAleldPn 33 
                 ++ + ++lg++eeA +a+e+Al  d +
  CCE29004.1 209 QAVCELHLGRLEEAQAALEEALNKDGQ 235
                 78999*****************98866 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0         3   3.4e+03      13      29 ..      81      97 ..      73     101 .. 0.75
   2 ?   -0.2   0.0       1.8     2e+03       9      24 ..     111     126 ..     107     127 .. 0.79
   3 ?   -0.7   0.0       2.7     3e+03      13      27 ..     177     195 ..     166     198 .. 0.67
   4 ?    8.9   0.0    0.0022       2.5       4      29 ..     207     232 ..     204     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3
                HHHHHHHHHHHHHHHHH CS
       TPR_6 13 lgdtdkAlealerlike 29
                lg+td Ale+ e+l ++
  CCE29004.1 81 LGNTDVALETVEKLASS 97
                69999999998888765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAleale 24 
                  ++++g++++Al++l 
  CCE29004.1 111 VLQAAGKSEAALALLS 126
                 6677889****99986 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.7
                 H...H.HHHHHHHHHHHHH CS
       TPR_6  13 l...g.dtdkAlealerli 27 
                 l   g ++++A   +e+l 
  CCE29004.1 177 LrvgGeKYQQAFYVFEELA 195
                 3455448999999999886 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerlike 29 
                   +a + + lg+ ++A +ale+ +++
  CCE29004.1 207 VSQAVCELHLGRLEEAQAALEEALNK 232
                 56899****99***********9987 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.8   3.1e+03       5      12 ..      17      24 ..      16      29 .. 0.80
   2 ?   -2.9   0.0         5   5.6e+03       7      18 ..     115     126 ..     111     127 .. 0.76
   3 ?   10.9   0.1   0.00025      0.28       7      30 ..     216     239 ..     213     243 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.8
      TPR_11  5 yeqGkyee 12
                + qG+y++
  CCE29004.1 17 FHQGQYDQ 24
                56899986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5
      TPR_11   7 qGkyeeAieaYk 18 
                  Gk e+A++ ++
  CCE29004.1 115 AGKSEAALALLS 126
                 588899998766 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00025
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaea 30 
                 +G++eeA +a+++Al+ d +n++a
  CCE29004.1 216 LGRLEEAQAALEEALNKDGQNVDA 239
                 7********************998 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1         4   4.5e+03      34      48 ..      41      55 ..      33      65 .. 0.60
   2 ?   -1.0   0.1       2.6   2.9e+03      41      60 ..      75      94 ..      46     102 .. 0.50
   3 ?    7.4   0.4    0.0063       7.1       5      67 ..     110     164 ..     108     165 .. 0.82
   4 ?   10.7   0.5    0.0006      0.67      35      61 ..     204     230 ..     175     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4
      TPR_16 34 aeAllllgdaalrqg 48
                a+ l l++++al q 
  CCE29004.1 41 ARVLVLRARIALGQA 55
                555556666665443 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.6
      TPR_16 41 gdaalrqgrlaeAaalyraa 60
                + a   +g+ + A++ ++++
  CCE29004.1 75 AFAEHTLGNTDVALETVEKL 94
                44444555555565555555 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0063
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraalraapda 67 
                 + + +ag+ ++A+    a+l ++       eA  l  +++l+q+r ++A+ +++ a  r ++++
  CCE29004.1 110 TVLQAAGKSEAAL----ALLSQH---QGSLEAVALIVQIHLEQNRTDLALkEVVSA--RSWAQD 164
                 5677888888888....777888...88889*******************888887..877776 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.0006
      TPR_16  35 eAllllgdaalrqgrlaeAaalyraal 61 
                 ++l   +++ l++grl+eA a++++al
  CCE29004.1 204 RSLVSQAVCELHLGRLEEAQAALEEAL 230
                 6778899************99999998 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       2.6   2.9e+03      13      29 ..      18      34 ..      13      55 .. 0.45
   2 ?   -1.1   0.1       4.4     5e+03       9      18 ..      47      56 ..      36      63 .. 0.50
   3 ?    1.5   0.0      0.64   7.2e+02      10      37 ..      77     104 ..      73     107 .. 0.81
   4 ?    0.9   0.1         1   1.1e+03      10      25 ..     111     126 ..     109     129 .. 0.77
   5 ?    1.8   0.1      0.52   5.8e+02       2      24 ..     133     155 ..     132     173 .. 0.70
   6 ?   11.2   0.3   0.00048      0.54      11      39 ..     213     241 ..     203     246 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 2.6
      TPR_14 13 alGdpdeAiallrrala 29
                ++G++d+ ++    a +
  CCE29004.1 18 HQGQYDQVVDFDTSAFS 34
                66666655443333333 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 4.4
      TPR_14  9 eallalGdpd 18
                +a  alG+ +
  CCE29004.1 47 RARIALGQAE 56
                2233333333 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.64
      TPR_14  10 allalGdpdeAiallrralalaPddaea 37 
                 a+ +lG++d A++  +++ + a d+ ++
  CCE29004.1  77 AEHTLGNTDVALETVEKLASSAADNVTV 104
                 45679***********999988888776 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 1
      TPR_14  10 allalGdpdeAiallr 25 
                 +l a+G+ ++A+all 
  CCE29004.1 111 VLQAAGKSEAALALLS 126
                 6788899999998886 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.52
      TPR_14   2 eallalaeallalGdpdeAiall 24 
                 ea +++++++l++ ++d A++  
  CCE29004.1 133 EAVALIVQIHLEQNRTDLALKEV 155
                 68889999*********998854 PP

  == domain 6  score: 11.2 bits;  conditional E-value: 0.00048
      TPR_14  11 llalGdpdeAiallrralalaPddaeawl 39 
                 +l+lG+++eA a+l++al ++ ++ +a  
  CCE29004.1 213 ELHLGRLEEAQAALEEALNKDGQNVDAIA 241
                 579*****************999987755 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.4   1.5e+03      45      65 ..      61      81 ..      45      88 .. 0.74
   2 ?    4.8   0.0     0.036        41      35      66 ..      85     116 ..      72     127 .. 0.83
   3 ?    5.1   0.1     0.029        33      19      50 ..     223     254 ..     218     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.4
                HHHHIIT-BHHHHHHHHHHHH CS
    ATP-cone 45 rkrlrdgisteeIqdlvektl 65
                + +++++++ e I+ + e+tl
  CCE29004.1 61 EVKGESEPDLEVIGAFAEHTL 81
                3368899999*****999999 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHH CS
    ATP-cone  35 eiaeeveaevrkrlrdgisteeIqdlvektli 66 
                 ++a e ++++ ++  d+++++ I+  v +++ 
  CCE29004.1  85 DVALETVEKLASSAADNVTVQVIGGTVLQAAG 116
                 46668889*****************9999875 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.029
                 HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHII CS
    ATP-cone  19 kraiekAcegseeeideiaeeveaevrkrlrd 50 
                 ++a+e A++++ +++d+ia+ ++++v ++ +d
  CCE29004.1 223 QAALEEALNKDGQNVDAIANMLVLQVASGRDD 254
                 689999*999***********99999877666 PP

>> Pro_Al_protease  Alpha-lytic protease prodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.7       2.8   3.1e+03      33      44 ..      99     110 ..      90     125 .. 0.62
   2 ?   12.2   0.3   0.00012      0.14       4      55 ..     217     264 ..     216     267 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.8
  Pro_Al_protease  33 tNkVVVtadsgv 44 
                      ++ V+V++  g 
       CCE29004.1  99 ADNVTVQVIGGT 110
                      556666666444 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00012
  Pro_Al_protease   4 aeLdaakaaLdraaaraaaavtaWyVDvatNkVVVtadsgvtaa.aealaaaA 55 
                        L++a+aaL +a  +      +  VD  +N +V++++sg+ +    +l+++A
       CCE29004.1 217 GRLEEAQAALEEALNKD-----GQNVDAIANMLVLQVASGRDDSqYVELLKKA 264
                      579*******9777777.....899***************9988777777777 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         2   2.2e+03      37      61 ..      76     100 ..      75     108 .. 0.67
   2 ?   -0.8   0.0       1.6   1.8e+03       4      19 ..     141     156 ..     138     187 .. 0.63
   3 ?   10.0   0.5   0.00065      0.73      35      65 ..     209     239 ..     181     247 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2
       TPR_9  37 lllaqlGclsaAladLeaylalapd 61 
                 ++++ lG++ +Al+  e  ++ a d
  CCE29004.1  76 FAEHTLGNTDVALETVEKLASSAAD 100
                 6677788888888877766665555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.6
       TPR_9   4 iaireedweralavve 19 
                 i++++++ + al+ v 
  CCE29004.1 141 IHLEQNRTDLALKEVV 156
                 6666666666665443 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00065
       TPR_9  35 RGlllaqlGclsaAladLeaylalapdapda 65 
                  ++++ +lG+l++A a+Le +l +++++ da
  CCE29004.1 209 QAVCELHLGRLEEAQAALEEALNKDGQNVDA 239
                 68999*****************999877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2088.56
//
Query:       CCE29005.1  [L=153]
Description: probable multiprotein bridging factor MBF1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-26   91.2   1.5    7.4e-26   90.4   1.5    1.4  1  MBF1      Multiprotein bridging factor 1
      6e-10   39.0   0.0    1.1e-09   38.2   0.0    1.4  1  HTH_3     Helix-turn-helix
     0.0013   19.0   0.0     0.0027   18.0   0.0    1.5  1  HTH_31    Helix-turn-helix domain
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.25   11.3   0.0    1.4  1  HTH_37    Helix-turn-helix domain
       0.16   12.0   0.0       0.29   11.2   0.0    1.4  1  HTH_19    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> MBF1  Multiprotein bridging factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   1.5   2.1e-29   7.4e-26       2      72 .]       3      78 ..       2      78 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 2.1e-29
        MBF1  2 DWdsvtvigkkar......katvaksesalnaArRsGavvetekKfaagtNkaskaqegqnlaKlDreteelkpkkV 72
                DWd+vt+ig+k+r      ++tv++++salnaA R+Gavv tekK + ++N+a+++++gq+l+K+Dr++e++kp+++
  CCE29005.1  3 DWDTVTKIGSKTRgpggaeRETVIRGKSALNAASRTGAVVGTEKK-YSTANAAASGSDGQRLTKVDRSDEIIKPNTI 78
                9********************************************.99****99999*****************997 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   3.1e-13   1.1e-09       3      52 ..      88     139 ..      86     141 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 3.1e-13
                 HHHH..HTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEH CS
       HTH_3   3 elRk..qlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsl 52 
                 ++R+  + +++q++LA +++ ++s +++ E+G + P++++l  ++++L+v+l
  CCE29005.1  88 AARQkmEPKMTQKDLATRCNTTQSIVADFERGSATPDQKVLSGMERVLNVKL 139
                 677777899*****************************************98 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   7.5e-07    0.0027       3      56 ..      83     137 ..      81     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.5e-07
      HTH_31   3 GalLralRera..GLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgl 56 
                 G++  a+R++    ++q+++A r++ ++s + + E+G  + p   vl  + r+l++
  CCE29005.1  83 GDTISAARQKMepKMTQKDLATRCNTTQSIVADFERGSAT-PDQKVLSGMERVLNV 137
                 55666677755448*************************6.**9999999999987 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     7e-05      0.25      31      54 ..      96     119 ..      84     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7e-05
                 T--HHHHHHHHT--HHHHHHHHTT CS
      HTH_37  31 elsqseaaqllgiaqPkvsrllrg 54 
                 + +q+++a++++++q+ v + +rg
  CCE29005.1  96 KMTQKDLATRCNTTQSIVADFERG 119
                 68*****************99998 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     8e-05      0.29      12      45 ..      96     128 ..      90     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8e-05
      HTH_19  12 gltqeelaerlgisrskisaiEngkkdvpsaell 45 
                 ++tq++la r+ +++s  + +E g+  +p+ ++l
  CCE29005.1  96 KMTQKDLATRCNTTQSIVADFERGSA-TPDQKVL 128
                 8***********************99.9986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1115.51
//
Query:       CCE29006.1  [L=631]
Description: uncharacterized protein CPUR_02697 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-60  204.4   0.0      3e-60  203.9   0.0    1.2  1  DUF1365   Protein of unknown function (DUF1365)


Domain annotation for each model (and alignments):
>> DUF1365  Protein of unknown function (DUF1365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.9   0.0   1.7e-64     3e-60       2     240 .]     113     395 ..     112     395 .. 0.84

  Alignments for each domain:
  == domain 1  score: 203.9 bits;  conditional E-value: 1.7e-64
     DUF1365   2 yegsvrHaRllpvkhaFsYplllllldldeleel..rlfsrnrlal...............lslrdedyldkke..stslkekleellaeeggeeeelg 81 
                 + ++++H+Rl+p+kh+F Y++l++++++   +     ++s ++ +l               +++++ dyl+ ++  + +l+ kl+ +l+++g++++++ 
  CCE29006.1 113 IPCKTTHTRLFPQKHTFIYSYLVVGIPVGISS-NsnGMLSASNERLqgfrgflsnilcgtwYKVNAFDYLQ-RGfsDAGLRGKLDTYLQSQGEDPKDYP 209
                 689*************************7333.2353444333323345666666666666*********4.3356779******************** PP

     DUF1365  82 kvwlltmprvlGyvfnPvsfyycydeekekleavvlEVsNTfgerhvYvlkad.......eagkd.............ltfpKeFhVSPFndrdgsYrl 160
                 +++l+t++r+lGy+fnPvsf+y+y++e + l+a+vlEV+NTf+er+ Y++  d                         ++++K+FhVSPFn+r+g+Y+l
  CCE29006.1 210 HAYLVTAARFLGYHFNPVSFWYLYNSE-RILSAIVLEVNNTFDERRPYLVLRDlsteakrL---SgmtpgvtagprirASWAKDFHVSPFNSRKGTYSL 304
                 ************************877.67*******************988877655550...044444445444556******************** PP

     DUF1365 161 rlkdplke...s.erlavrikllses.kekltAtlklerkp.....ltaasllrallryplmtlltvvrIlyqAlkLh.lKrlpvyprpep 240
                  ++dpl++   + + l+ +i+l+s++ ++kl+A+l +e +      ++  + +++llr+ ++ ++t++rI+ qA+ L+  ++l+v+ rpep
  CCE29006.1 305 LANDPLDPdtgDfRGLDATINLNSSKgHAKLVARLFSEGEAidpefMSVTEKIQFLLRWFWVGFATFPRIVKQAAALFfKRKLHVWYRPEP 395
                 *****9996551579********999899********98887788889******************************889********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4720.68
//
Query:       CCE29007.1  [L=136]
Description: uncharacterized protein CPUR_02698 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-24   86.5   0.0    1.7e-24   86.0   0.0    1.3  1  GFA       Glutathione-dependent formaldehyde-activating enzym
  ------ inclusion threshold ------
        0.2   11.7   2.9          2    8.5   0.1    2.4  2  DZR       Double zinc ribbon


Domain annotation for each model (and alignments):
>> GFA  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.0   1.9e-28   1.7e-24       3      92 ..      27     117 ..      25     118 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 1.9e-28
         GFA   3 ChCsdCrkasgsaftanavvkaealellegelkeykktadsgnkvtrsfCpeCgsplyseesaapevvivrvGtlddp..eklkpeaeiftk 92 
                  hC+dC++++gs+++++++v++e+l+ ++g +k+++ ++ sg+ v+r fC+eCgsp+ ++++ ape + +++Gtld++  ++lkp++ei+t 
  CCE29007.1  27 DHCDDCQRQTGSTYSLVTIVPKEKLT-INGPIKKWSGKGSSGKAVHRLFCSECGSPIAHDPDVAPEIISLKAGTLDMElkKNLKPDTEIWTV 117
                 5*************************.9***************************************************9**********95 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.3    0.0074        67      28      38 ..      26      36 ..       5      43 .. 0.69
   2 ?    8.5   0.1   0.00022         2      13      24 ..      73      84 ..      64     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0074
         DZR 28 edrCpsCgekv 38
                 d+C+ C++++
  CCE29007.1 26 YDHCDDCQRQT 36
                67788888775 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00022
         DZR 13 rfCseCgtklka 24
                 fCseCg+++  
  CCE29007.1 73 LFCSECGSPIAH 84
                489999998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 946.07
//
Query:       CCE29008.1  [L=372]
Description: uncharacterized protein CPUR_02699 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2911.24
//
Query:       CCE29009.1  [L=612]
Description: related to PET56-rRNA (guanosine-2`-O-)-methyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-24   86.9   0.0    2.4e-24   86.1   0.0    1.4  1  SpoU_methylase  SpoU rRNA Methylase family
    1.4e-10   41.3   0.0    2.3e-10   40.6   0.0    1.4  1  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   2.7e-28   2.4e-24       2     142 .]     412     571 ..     411     571 .. 0.85

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 2.7e-28
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST.T-SEGC.....C CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl.kgksls.....e 90 
                     l+++l ei dpgNlGa++Rta+ +g++++ ++++ s ++++p ++++a+g++e + + +v+s +e+lk+ +  g++++++ +  +k+l      +
      CCE29009.1 412 LVLLLHEIVDPGNLGAVLRTASYMGIDAVGITNRGS-APITPVVLKSASGSAEEVSIFTVESPAEFLKASRAMGWKTYSAIApPDKKLVrlhgqK 505
                     7899***************************99665.5***************************************999887555555243442 PP

                     S....HHH........TTEEEEEEBTTTBS-HHHHCTSSEEEE---...-TTSSS--HHHHHHHHHH CS
  SpoU_methylase  91 i....dlk........ekvalvfGnEdkGlsnelleladrlvkIpm...sgeveSLNvavAvailly 142
                     +    +           +++lv+GnE+ Gl++++  + d+ ++Ip    +  v+SLNv+vA+a+l++
      CCE29009.1 506 FistdS-IeqdrpldqHPCVLVMGNEGLGLPRQIKVATDYELSIPKftrECYVDSLNVSVATALLCH 571
                     244441.0456778899****************************85423346**********9985 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   2.5e-14   2.3e-10       1      73 [.     281     360 ..     281     363 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 2.5e-14
  SpoU_sub_bind   1 liyGlhaVleaLksgrr.iekllvteg..radkr.leellklakkrgikvelvdkek...LdklsgtanHQGvvaevkpl 73 
                    ++yG+  V +aL+ grr + +l+v  g  r+d++  e l++la++rg+++  v+ e+   +dk+s + +H+G+v+e+++l
     CCE29009.1 281 FLYGTSVVKAALEVGRRqMYRLYVYGGenRRDNKdNEILMDLARSRGVPITVVPTEEqrlMDKMSMGRPHNGFVLEASQL 360
                    58*************999****998887755555256677889999********999999****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4380.24
//
Query:       CCE29010.1  [L=1622]
Description: related to CHD1-transcriptional regulator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-65  217.8  19.0    1.5e-64  216.7  19.0    1.5  1  zf-PHD-like  PHD/FYVE-zinc-finger like domain
      6e-49  166.6   0.0    9.9e-49  165.9   0.0    1.3  1  SNF2_N       SNF2 family N-terminal domain
    2.1e-19   69.9   0.1    1.3e-18   67.4   0.0    2.4  2  Helicase_C   Helicase conserved C-terminal domain
      2e-07   30.8   1.8    7.1e-05   22.6   0.4    3.2  3  Chromo       Chromo (CHRromatin Organisation MOdifier) domain
    2.6e-06   26.8   3.4    5.5e-06   25.7   3.4    1.5  1  HDA2-3       Class II histone deacetylase complex subunits 2 
    8.4e-06   25.6   6.6    8.4e-06   25.6   6.6    3.2  3  PHD          PHD-finger
    4.5e-05   23.5   0.0    9.6e-05   22.4   0.0    1.6  1  ResIII       Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.52   11.0   3.1         16    6.2   0.2    3.4  3  SnAC         Snf2-ATP coupling, chromatin remodelling complex
        3.8    7.2  12.6      0.048   13.2   0.4    3.1  3  PHD_2        PHD-finger
        6.8    6.7   8.6        2.6    8.1   4.2    2.6  2  Prok-RING_1  Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> zf-PHD-like  PHD/FYVE-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.7  19.0   8.3e-68   1.5e-64       1     169 []     363     526 ..     362     526 .. 0.98

  Alignments for each domain:
  == domain 1  score: 216.7 bits;  conditional E-value: 8.3e-68
  zf-PHD-like   1 CdtCaeskdeekgqlvyCqGCslsyhkaClGkRsaRehlvtkvgedsFvlqCrrCiglakkkdklapkldvCqeCkeegksckpfrekktakqeeklr 98 
                  C++C++ +  ++gq+vyCqGCs +yhk+C+G+RsaR+hl+tk+ge sFvlqCr+Ci++++k++ +ap++++Cq C e+g+sc+pf+++kta+qeeklr
   CCE29010.1 363 CHACKAPN--NRGQFVYCQGCSFAYHKQCIGPRSARDHLATKIGEASFVLQCRFCIEHQHKNEITAPRRAMCQYCMESGRSCAPFSQRKTARQEEKLR 458
                  99999988..**************************************************************************************** PP

  zf-PHD-like  99 eendgvdPiteveeelinnaenvlfRCaeCkrawhlehlpkkskkseeedeeelaeerlkeysikwkCkdC 169
                  e+n+gvdP t+v+e+ +nna+nvlfRC++C+rawh +hlp+   +    d++++a   +k+ys++w C++C
   CCE29010.1 459 EQNGGVDPWTRVREDYLNNADNVLFRCCNCQRAWHQHHLPPIGCEG---DAQDQAFGAFKDYSTDWYCNEC 526
                  *******************************************999...77889999************** PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.9   0.0   5.5e-52   9.9e-49      49     349 ..     745    1022 ..     711    1023 .. 0.89

  Alignments for each domain:
  == domain 1  score: 165.9 bits;  conditional E-value: 5.5e-52
                  HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH..--------- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
      SNF2_N   49 aeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkk..mkkkntkva 143 
                  ++++++ r  iLaDemGLGKTvqv++l++   +  ++ ++         p+Li vP +++ +W +e+++++++ ++  +++g++ +    k++ + +
  CCE29010.1  745 VSNYHHGRSVILADEMGLGKTVQVVSLVT---YLVQESPK-------CWPFLISVPNATCPNWRREFRQWAPDLRVVTYHGGKEAQdlAYKHELFPQ 831 
                  568899999********************...76666665.......59*************************99888887777755445555666 PP

                  --------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  144 pklladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqt 240 
                       +++vvi +Yd  +        r+ +++v+w  +v+DEg++lkn ++ ++ a++ ++   r++ltGTP+qn+ ++l+ L++f+  ++      
  CCE29010.1  832 GSRDMAAHVVIMSYDSAQDPR----TRELFSSVRWAGLVVDEGQRLKNDQNLLYRALRAMKIPFRLLLTGTPLQNNKRELFNLIQFIDQSKKA---- 920 
                  6777889*********99555....8*************************************************************988766.... PP

                  HHHHTHHHHHHHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  241 fdkllqrpieaqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilell 337 
                    ++l+ ++   +++   +L+++++++ lrr+k+ v k lPp t+ i+ + ++  ++++ + ++ +  + + a + + +  + + +s     + ++l
  CCE29010.1  921 --EQLDLEFSILDKETLPKLHEMIRPYFLRRTKAGVLKFLPPMTQIILPVTMTVIQERLSKSIMAKNPQLIKAIFANGKMRSKERGS-----LNNIL 1010
                  ..667777777899999********************************************88888888888888888776666666.....9999* PP

                  HHHHHHHH---X CS
                  xxxxxxxxxxxx RF
      SNF2_N  338 lelrqacnhpql 349 
                  ++lr++ +hp +
  CCE29010.1 1011 MQLRKCLCHPFM 1022
                  *********987 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.4   4.3e+03      28      56 ..     976    1004 ..     962    1022 .. 0.69
   2 !   67.4   0.0   7.2e-22   1.3e-18       5     111 .]    1050    1160 ..    1045    1160 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.4
                  HHHHHHHHHHHT..TSTEEEESTTSTHHHHH CS
  Helicase_C   28 rlekvklllekk..gikvavlhgelpqnere 56  
                  rl+  k +  k+   ik++  +g++ ++er 
  CCE29010.1  976 RLS--KSIMAKNpqLIKAIFANGKMRSKERG 1004
                  443..333333344799999******99996 PP

  == domain 2  score: 67.4 bits;  conditional E-value: 7.2e-22
                  HHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH...TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C    5 allell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn...kgesdvLiatdvaerGidipkvnlVinfdlprnv 97  
                   l  +l  l+e+g+++lif+++ ++l+ ++ +l+  ++++ +l+g++++ e+++ +++fn   +  + +L++t++++ Gi++  +++Vi++d+++n+
  CCE29010.1 1050 LLEVMLpRLKERGHRVLIFSQFLQQLDIMEDFLNGIDYEYRRLDGQMSSLEKQRCIDAFNephSTVFAFLLSTRAGGVGINLATADTVIIMDPDFNP 1146
                  4444458899****************98777766669***********************76334455***************************** PP

                  HHHHHHHTTSSSTT CS
  Helicase_C   98 tsyiqriGRtgRag 111 
                  ++ iq+  R++R+g
  CCE29010.1 1147 HQDIQALSRAHRIG 1160
                  ************97 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.4     4e-08   7.1e-05      11      36 ..     555     578 ..     532     583 .. 0.84
   2 !    5.5   0.0    0.0091        16      17      34 ..     644     670 ..     631     674 .. 0.75
   3 ?   -1.9   0.0       1.9   3.4e+03      41      53 ..    1100    1110 ..    1096    1110 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4e-08
                 EETTEECEEEEEEETTSTGGGTEEEE CS
      Chromo  11 tdkdgleleYlVKWkglpysentWEp 36 
                 +++d +  eYlVKW+ ++y ++tW p
  CCE29010.1 555 VSDDDK--EYLVKWETMSYCHCTWMP 578
                 456666..****************77 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0091
                 C.........EEEEEEETTSTGGGTEE CS
      Chromo  17 e.........leYlVKWkglpysentW 34 
                 e         ++ lVK +gl y++  W
  CCE29010.1 644 EddredtsqiTKVLVKFQGLGYDDVVW 670
                 23333455579************9998 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.9
                  SSHSHHHHHHHHH CS
      Chromo   41 ekcfqelideFkk 53  
                  e  +q++id+F++
  CCE29010.1 1100 E--KQRCIDAFNE 1110
                  4..379*****85 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   3.4   3.1e-09   5.5e-06       7     254 ..     965    1191 ..     962    1214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.1e-09
                  EEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH.HHHHHHHH.HHHHHHH-GGGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHH CS
      HDA2-3    7 ylPtpltelqkelteqivslhyedllkyvetsdsqeklslsikslticlenlslvanHPsLLvdHympkklllkelpeklaetSgKFkvlndlvnli 103 
                   lP+++t +q  l + i+    + +   +   ++++k      sl+ +l +l+    HP +  + + +       + + l+e S+K+ +l+ ++  +
  CCE29010.1  965 ILPVTMTVIQERLSKSIMAKNPQLIKAIFANGKMRSKE---RGSLNNILMQLRKCLCHPFMYSEAIEEEHNNPDIIHQNLVEASAKLLLLEVMLPRL 1058
                  59**************9998877777777666777766...567788888999999************999999*********************** PP

                  TTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-..................-SEEEEEEESS---TTTS--TT-S-EEE CS
      HDA2-3  104 ierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkkskdtkknsrktkeklkkkihsltihllsttrqltkdksllenikfdl 200 
                   er       vl+ ++  ++ld+ E +l G + +++r++g++ + ek+               +  ++ hs+++ +l +tr         +   +d 
  CCE29010.1 1059 KERG----HRVLIFSQFLQQLDIMEDFLNGIDYEYRRLDGQMSSLEKQRCI------------DAFNEPHSTVFAFLLSTRAGGVG---INLATADT 1136
                  ***9....9*********************************999999988............45677899********9998444...666778** PP

                  EEE-SST--TTSHHHHHHH----.------EEEEEETTSHHHHHHHHTS-TT-HH CS
      HDA2-3  201 iiafDssvdtsspsveslrtqnr.kknklpiirlvpinSieHvkLcfkkdedepe 254 
                  +i +D++++++++   + r ++  +k+k+  ++l++ +++e   +++ k++   +
  CCE29010.1 1137 VIIMDPDFNPHQDIQALSRAHRIgQKHKVLCFQLMTKDTVEERIMQIGKKKMALD 1191
                  **********99888777877641444599999***99*9999988884444444 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   6.6   4.7e-09   8.4e-06       2      51 ..     363     417 ..     362     418 .. 0.90
   2 ?    1.3   0.9      0.17   3.1e+02      12      28 ..     406     422 ..     400     438 .. 0.80
   3 !    5.8   4.8    0.0071        13      10      51 ..     477     528 ..     472     529 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4.7e-09
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSS......TBSSTTTHT CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpeg......ewlCekCke 51 
                 C++Ck+  ++ +++v+C+gC+ ++H++C++p   ++   ++        +C+ C e
  CCE29010.1 363 CHACKA-PNNRGQFVYCQGCSFAYHKQCIGPRSARDHLATKigeasfVLQCRFCIE 417
                 ******.99***********************999988888999977778999975 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.17
                 TSCEEEETTTSCEEETT CS
         PHD  12 eeelvqCdgCkrwfHqk 28 
                  ++++qC  C +++H++
  CCE29010.1 406 ASFVLQCRFCIEHQHKN 422
                 678999**9*9999975 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0071
                 STTSCEEEETTTSCEEETTTSSSTHSHHSHHSS..........TBSSTTTHT CS
         PHD  10 deeeelvqCdgCkrwfHqkClkppleseekpeg..........ewlCekCke 51 
                 ++++ l  C +C+r+ Hq  l p   + + +++          +w+C++C +
  CCE29010.1 477 NADNVLFRCCNCQRAWHQHHLPPIGCEGDAQDQafgafkdystDWYCNECIS 528
                 56788899*********98666655544444445667779999*******75 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   5.3e-08   9.6e-05       4     169 ..     733     899 ..     699     901 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 5.3e-08
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B--.. CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseayke...igkkvsgdkkka.. 96 
                 l  yQ+e ++ l++++  ++ + ++++ + G GKT+  ++l+ +l ++ ++   fl+ vp+ + +  +++ef++++++ +      gk+ +        
  CCE29010.1 733 LMGYQIEGLNWLVSNY--HHGRSVILADEMGLGKTVQVVSLVTYLVQESPKCwPFLISVPNAT-CPNWRREFRQWAPDLRVVtyhGGKEAQ-----Dla 823
                 5567888888887777..58889999********************99886689999999876.788**********98744554333333.....244 PP

                 ..............-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T..TTHHHHHT---SEEEEEESS- CS
      ResIII  97 .......kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk..swreilekfkeavllglTATp 169
                        + +++  +++++++++s++ ++     ++e +++ r   +++DE  rl+ ++   +r+ l+++k  ++l lT+Tp
  CCE29010.1 824 ykhelfpQGSRDMAAHVVIMSYDSAQDPR-----TRELFSSVRWAGLVVDEGQRLKNDQnlLYRA-LRAMKIPFRLLLTGTP 899
                 4458888899999****************.....999*******************985445555.888899*********9 PP

>> SnAC  Snf2-ATP coupling, chromatin remodelling complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.083   1.5e+02      55      69 ..     143     157 ..     118     160 .. 0.84
   2 ?   -1.5   0.0       2.2     4e+03      43      67 ..     171     195 ..     165     196 .. 0.82
   3 ?    6.2   0.2    0.0091        16      41      73 ..    1302    1335 ..    1282    1336 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.083
                 HH-XXXXXXXXXXXX CS
        SnAC  55 ygrgkRaRkevsYeD 69 
                  g+ +R+Rk  sYeD
  CCE29010.1 143 IGQNNRKRKHESYED 157
                 57899*********9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.2
                 --HHHHHHHHHHHH-XXXXXXXXXX CS
        SnAC  43 kkeekeeldeqlygrgkRaRkevsY 67 
                 ++++ e+ de +  r +R+R ++ Y
  CCE29010.1 171 DSDQAEDMDEIIVNRRSRTRSSTVY 195
                 55677889999*********99988 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0091
                  ----HHHHHHHHHHHH-XXXXXXXXXXX.XXXXX CS
        SnAC   41 eekkeekeeldeqlygrgkRaRkevsYe.DqlTE 73  
                  ee+ + + ++++++ grg R+R   +Y+ D l E
  CCE29010.1 1302 EEEARLQAAAKQETLGRGGRRRTANNYRsDVLAE 1335
                  55555566788999*************9787776 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   2.7e-05     0.048       3      23 ..     374     394 ..     372     399 .. 0.84
   2 ?   -3.4   1.7       4.3   7.7e+03       2      17 ..     480     495 ..     479     495 .. 0.82
   3 ?    2.0   0.2     0.086   1.5e+02      28      35 ..     519     526 ..     513     527 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.7e-05
       PHD_2   3 pllsCdkCsvaVHasCYGvsk 23 
                 ++++C++Cs a H++C G ++
  CCE29010.1 374 QFVYCQGCSFAYHKQCIGPRS 394
                 78**************88665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.3
       PHD_2   2 npllsCdkCsvaVHas 17 
                 n+l  C +C+ a H++
  CCE29010.1 480 NVLFRCCNCQRAWHQH 495
                 6777899999999986 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.086
       PHD_2  28 eeWlCrrC 35 
                 ++W+C+ C
  CCE29010.1 519 TDWYCNEC 526
                 57****** PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.2    0.0014       2.6       6      34 ..     362     389 ..     359     393 .. 0.90
   2 ?   -2.3   0.1       2.5   4.5e+03      23      32 ..     523     532 ..     522     533 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0014
  Prok-RING_1   6 kCpvCgkelkeedDiVvCpeCgtpyHraC 34 
                   C +C+ + + +   V C  C   yH++C
   CCE29010.1 362 TCHACKAPNNRG-QFVYCQGCSFAYHKQC 389
                  7****9998887.89************** PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.5
  Prok-RING_1  23 CpeCgtpyHr 32 
                  C eC + +H+
   CCE29010.1 523 CNECISAQHK 532
                  9*****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.95u 0.27s 00:00:01.22 Elapsed: 00:00:00.44
# Mc/sec: 10981.45
//
Query:       CCE29011.1  [L=487]
Description: uncharacterized protein CPUR_02702 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0013   18.6   0.0       0.24   11.6   0.0    2.8  2  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.033   14.1   2.5      0.046   13.6   0.7    2.2  2  Sec20     Sec20
      0.095   12.9   0.0         23    5.2   0.0    2.6  2  TPR_9     Tetratricopeptide repeat
       0.12   12.2   0.0       0.33   10.8   0.0    1.8  1  TPR_1     Tetratricopeptide repeat
       0.13   11.9   0.4       0.52   10.0   0.1    2.1  2  DUF4988   Domain of unknown function
       0.15   12.8   0.1          1   10.2   0.1    2.5  1  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.02        61       4      33 ..     152     181 ..     150     182 .. 0.87
   2 !   11.6   0.0   8.2e-05      0.24       5      28 ..     222     245 ..     222     247 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.02
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 +++l++++y+++  e Al+  ++ +  +Pn
  CCE29011.1 152 HFMLAQLAYNSNSVESALRVIDREILFYPN 181
                 99****************998887777765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 8.2e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAl 28 
                 y +Gl y+ + ++ +A+eafe+++
  CCE29011.1 222 YIRGLMYMSRREWTKAKEAFEQVI 245
                 669*******************87 PP

>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   3.5e+03      50      63 ..      46      59 ..      27      88 .. 0.72
   2 ?   13.6   0.7   1.6e-05     0.046      29      64 ..     420     455 ..     408     463 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
       Sec20 50 dvlsrskklvkkle 63
                 vl+++k++++ l+
  CCE29011.1 46 LVLNMTKEILEALD 59
                45666666666554 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.6e-05
       Sec20  29 eeldastkslekleeeykqvedvlsrskklvkkler 64 
                  ++ +s +++++++++ykq++d ls +k+ vk l  
  CCE29011.1 420 SQIAQSFHNIQSINQQYKQMNDQLSSTKEYVKHLAI 455
                 5788999*************************9863 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0077        23       2      28 ..     156     182 ..     155     185 .. 0.88
   2 ?    4.9   0.0      0.01        30      35      59 ..     224     248 ..     222     259 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0077
       TPR_9   2 kaiaireedweralavverllllaPdd 28 
                  ++a +++  e al+v++r +l+ P++
  CCE29011.1 156 AQLAYNSNSVESALRVIDREILFYPNT 182
                 577889999**************9986 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.01
       TPR_9  35 RGlllaqlGclsaAladLeaylala 59 
                 RGl+++ +  + +A +++e+ + + 
  CCE29011.1 224 RGLMYMSRREWTKAKEAFEQVILHP 248
                 9******************988765 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.33       5      28 ..     222     245 ..     222     247 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekAL 28 
                 y +G++y++  ++ +A e++e+++
  CCE29011.1 222 YIRGLMYMSRREWTKAKEAFEQVI 245
                 569*******************98 PP

>> DUF4988  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.55   1.6e+03      14      37 ..      28      52 ..      27      69 .. 0.79
   2 ?   10.0   0.1   0.00017      0.52      11      58 ..     428     479 ..     419     486 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.55
     DUF4988 14 aleeqvkelndniealkkll.eegk 37
                ++ +++  ln++ + +++l+ +  k
  CCE29011.1 28 SIRQHIALLNSSASEIHALVlNMTK 52
                6889999999999999999854444 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00017
     DUF4988  11 rvaaleeqvkelndniealkklleegkviteveensdg.....syvltlsdgk 58 
                  ++++++q+k++nd++++ k+ + +  +i +  + +dg     +y l+l+d +
  CCE29011.1 428 NIQSINQQYKQMNDQLSSTKEYV-KHLAIEKNRSDKDGgspwaNYALQLEDED 479
                 699*******************9.999***********999999*****9976 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00034         1       4      27 ..     222     245 ..     220     246 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerli 27 
                 y ++l y +  +++kA+ea+e++i
  CCE29011.1 222 YIRGLMYMSRREWTKAKEAFEQVI 245
                 78899999977***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3583.77
//
Query:       CCE29012.1  [L=585]
Description: uncharacterized protein CPUR_02703 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4546.32
//
Query:       CCE29013.1  [L=281]
Description: uncharacterized protein CPUR_02704 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-28   99.0  14.6    3.4e-28   98.7  14.6    1.1  1  SUR7      SUR7/PalI family
  ------ inclusion threshold ------
       0.16   11.9   0.0       0.25   11.2   0.0    1.2  1  YugN      YugN-like family


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7  14.6   3.8e-32   3.4e-28       2     211 ..      11     232 ..      10     233 .. 0.92

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 3.8e-32
        SUR7   2 rlillflslaalilllfailgsiknstpltsiylskfdls.gldlaqi............gladvysfgvwgyC.dnsdvnytkCskpkagypfdp..l 84 
                 ++i+ +l +++l +l+++++g + + ++l+++y++++d+s +++ a +            gl+d+y++gvw+yC ++ d++  +Cs+p+  ++f+p  +
  CCE29013.1  11 TIIAALLYFISLPFLILVLIGNTHDVAVLRDLYFFQLDVSqIIPIAVSnakllnsvarslGLYDFYQVGVWNYCeGYFDNGIAYCSPPETFFWFNPveI 109
                 689999**********************************66666666**************************9999******************442 PP

        SUR7  85 ..eelnsesngkvdlPsnlrktlsklnnltkalfilhiialvlsfislvvgllaicvspdnsrllsflnlllsvlsflatllaalldtllfvfvrkkin 181
                    +l  + +  ++lPs++   l++l+  +k++ ++++ +++l f++l+ + l +       r++s++ +++  l+++++++aa+++t++ v ++ +++
  CCE29013.1 110 lvGQLLAGAQ--IALPSEVLTILDLLRIGSKVMYVFFMAGTILNFVLLLGSPLVMR-----TRWFSLFISVIGGLAAVMLTVAAAIATAISVAAKVALT 201
                 3433333333..33*****************************************8.....9*********************************9**9 PP

        SUR7 182 .lkefgikaslglkflafaWlalaaallvvi 211
                    +++i++++g+k++ f+W+ ++a+ l+++
  CCE29013.1 202 sQDQLNINVNIGVKMFVFMWIGAIASDLAFL 232
                 ************************9988776 PP

>> YugN  YugN-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.8e-05      0.25      13      62 ..      63     114 ..      55     126 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.8e-05
        YugN  13 lkkleevlkplgyslggnWdYdhGyfDykldde..agyvflRlPfqavdGel 62 
                 l+++ + l   ++   g W+Y +GyfD  +      ++ f   P++++ G+l
  CCE29013.1  63 LNSVARSLGLYDFYQVGVWNYCEGYFDNGIAYCspPETFFWFNPVEILVGQL 114
                 56777788888999999***********998653346666667888887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2118.88
//
Query:       CCE29014.1  [L=99]
Description: uncharacterized protein CPUR_02705 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 800.02
//
Query:       CCE29015.1  [L=423]
Description: uncharacterized protein CPUR_02706 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   13.3   5.1         10    7.2   1.7    3.2  2  KRTAP7    KRTAP type 7 family


Domain annotation for each model (and alignments):
>> KRTAP7  KRTAP type 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.7   0.00056        10      53      80 ..     104     131 ..      67     134 .. 0.70
   2 ?    4.8   0.1    0.0031        56      19      55 ..     310     346 ..     305     353 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00056
      KRTAP7  53 gysfgg.snlsnlgccygssffrpwgsgs 80 
                 +++    sn++n gc + s f+rp  sgs
  CCE29015.1 104 EFCTRKySNITNVGC-HNSPFVRPGNSGS 131
                 45554449*****97.899*****99998 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0031
      KRTAP7  19 tnfhrtfratplncvvplgsplnygygyngysslgys 55 
                  n+   f +  + ++vp  s ln   g+ng +s g +
  CCE29015.1 310 HNLNVEFNVFGISLMVPAVSLLNDTNGINGTGSVGLA 346
                 5777789999999********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3185.36
//
Query:       CCE29016.1  [L=125]
Description: uncharacterized protein CPUR_02707 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.032   14.0   0.0      0.044   13.5   0.0    1.2  1  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-06     0.044      57     135 ..       8     102 ..       2     113 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-06
                    EEEEEEESSEEEEETTEE-HHHHHHHHHCSSS.STTHSHH.....STSTSEEESHHSHH.......HHS......S-SEEEE-SSTTSB-HHHHTH CS
  ELFV_dehydrog  57 kvvavsDssGviydpeGldieellelkeerks.vkeykks.....sekkaeyieneeel.......lel......kvdilvPcAtqneideenaka 133
                    + va+s + G ++d++G+d ++  +  ++ ++ +  + +      s +++++++ +  +         +        d++vPcA   +++ + +++
     CCE29016.1   8 RAVAISSQYGNLIDDKGIDCAAWPSRTTASRTsIPAVWRPalareSCNRIDTLPAR--PerlmsstC-TlfspqpGPDVFVPCAQRYVLTPDIVHT 100
                    679****************9999988666666577665445666666677777664..333444441.034556689*******999999998886 PP

                    TH CS
  ELFV_dehydrog 134 li 135
                    l 
     CCE29016.1 101 LA 102
                    65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 943.72
//
Query:       CCE29017.1  [L=756]
Description: probable Calcium_related spray protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.5e-161  536.0  35.2   6.8e-161  535.7  35.2    1.1  1  TRP       Transient receptor potential (TRP) ion channel
    1.3e-42  145.4   0.2    2.6e-42  144.5   0.2    1.5  1  TRP_N     ML-like domain


Domain annotation for each model (and alignments):
>> TRP  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  535.7  35.2  7.6e-165  6.8e-161       1     426 []     171     621 ..     171     621 .. 0.96

  Alignments for each domain:
  == domain 1  score: 535.7 bits;  conditional E-value: 7.6e-165
         TRP   1 vkwvtaviaglallasnasavastlgnsnaaahvaasvlslflyfQsvafigmlsvnyPpvlaawtqnfaWsmglirvsfmqkiinwyvqstgGtatlv 99 
                 vkw+taviaglal+a   sav+++lg+sn+aahvaa++lslf+yfQ++a++g+ sv++Pp++++wtq+f+Wsmg+i+vsfmq+i++wy+++tgGt++++
  CCE29017.1 171 VKWATAVIAGLALMA---SAVVNGLGHSNTAAHVAANSLSLFGYFQAQAILGLSSVHLPPIVQSWTQDFQWSMGIIKVSFMQDIFTWYQRATGGTPSTI 266
                 8**************...********************************************************************************* PP

         TRP 100 lsssstssvsv.kral.............................krgeskslpessskl.vrGikrvaekagiestnafmtgllffliliallvvlvl 167
                 +++ +t+sv+v kr+l                             kr   ++  +ss  + v+Gi+rva++++ie+tn+fmtgl+ff+i++++++++v+
  CCE29017.1 267 FDTLTTVSVQVeKRSLdmaghglnlfrrsaammpkpaytaatnlmKR---TNIMTSSGAYiVYGIQRVAFRTKIETTNLFMTGLTFFCIFVVFAILAVA 362
                 ***********657778888888888888899999999987544433...3444445556359************************************ PP

         TRP 168 lfKlllellarkklikedrlkefrknwlgilkgallrlilifffqllvlclfeftqrdsaavvvlAvillalflgvllffafrvlitarkskrlhknpa 266
                 +fK ++el++++k++  d++ efr+ w ++lkg+l+r++li+f+q+ +lcl+eftq ds+a++vlAv++++ + ++l++ a +v+++ar+s ++h+n+a
  CCE29017.1 363 FFKGVCELCIKQKWMAGDKFLEFRNGWFTVLKGILYRVALIGFPQMAILCLWEFTQSDSPAEIVLAVFFFFGLAATLAWGAAKVIRIARRSLSMHRNAA 461
                 *************************************************************************************************** PP

         TRP 267 ylLysdkkvlnkyGflyeqyrasrywffvpllvylfvkalfialaqgsGkvQvialliiEllylvlliwlrPyedkrtnvlniiisvvkvlnvilllaF 365
                  +L+sd++ lnk+Gfly q+ras y+f++p+l+y++vka+f+alaq+  ++Q+++++iiE+ +l++++++rP++dk+tn +ni+i+v+++ln+i+ll+F
  CCE29017.1 462 FILFSDPQALNKWGFLYIQFRASGYYFIIPVLCYTLVKAMFVALAQKASVAQAVGFVIIEAGALIAASVMRPWMDKSTNSFNIAICVINFLNAICLLIF 560
                 *************************************************************************************************** PP

         TRP 366 seefglseivktvvGvvlivinavlalvlliliivnaiiallsknpdrryrpakddresfl 426
                 s++fg ++iv +vvGvvl+v+na+++l+ll+++iv++++++++knpd+ry  + ddr+sf+
  CCE29017.1 561 SNVFGAPQIVIGVVGVVLFVLNAAFSLILLLMVIVSTTVTFFRKNPDARYLYMADDRASFM 621
                 ***********************************************************97 PP

>> TRP_N  ML-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   0.2   2.9e-46   2.6e-42       1     139 []      28     166 ..      28     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 2.9e-46
       TRP_N   1 lvtssfenClensqftaskfdvtftpdnktvvfnvtgtssienkavtlelkveaygyevvnetvdpCdanvkglCPlgpgfkinasgvlkvseevvsei 99 
                 l ++s++nC+e+s+ftas f+v++tp+n++ +++v +tss++++ v ++l ++aygy+++++tvdpC+++++glCP+ +g ki + ++l+v++++ ++i
  CCE29017.1  28 LMSNSLNNCQEDSSFTASLFNVVYTPKNNSATVEVVATSSVQGY-VLFDLAISAYGYTFLRRTVDPCEMKLGGLCPMVAG-KIPFAFNLPVPADASKQI 124
                 5789***************************************9.***********************************.****************** PP

       TRP_N 100 psiaYsipdldatvrvriys..tgeateiaCvsatitngktv 139
                 p+iaYsipdldatvrv i+   t++ + iaCv+a+i+ngktv
  CCE29017.1 125 PGIAYSIPDLDATVRVLINLtkTDNPRAIACVEADISNGKTV 166
                 ****************888754458899*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1074  (0.059903); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 5380.41
//
Query:       CCE29018.1  [L=662]
Description: related to regulatory protein wetA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1583  (0.0882927); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 4747.92
//
Query:       CCE29019.1  [L=476]
Description: uncharacterized protein CPUR_02710 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-51  175.0   0.1    1.9e-51  174.7   0.1    1.1  1  AIM24     Mitochondrial biogenesis AIM24


Domain annotation for each model (and alignments):
>> AIM24  Mitochondrial biogenesis AIM24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.7   0.1   1.1e-55   1.9e-51       2     201 .]     263     460 ..     262     460 .. 0.94

  Alignments for each domain:
  == domain 1  score: 174.7 bits;  conditional E-value: 1.1e-55
                 EEESS.SS-EEEEEE-TT-EEEE-CCGEEEEETTEEEEE--------------EEEEEEES.SS-EEEEE--SSSEEEEEEEGGTT.EEEEEGGGEEEE CS
       AIM24   2 evlge.pssllsvtLspgeelyaerGalvamsgkvemetgllkalkrlltgeslfllkftakissgtvllapklpgtivtlelgggdwlivqkdafLAa 99 
                 +++++   ++l+++L+ g++l a++Ga++ams +++++++++ ++k+++ g  + ++++ +   +g++llap+++g+i++++l+g+d++iv+ dafLAa
  CCE29019.1 263 RISHRdCNTVLTIQLAIGCPLQAKPGAMIAMSATMQLKGEVKFSMKKMIVGADMAVSRYVG---PGELLLAPPMLGDITSIRLDGQDSWIVGHDAFLAA 358
                 666666789***************************************************5...5********************************** PP

                 ETT-EEEEEEEE--.SSGGGTS-EEEEEEESSSEEEEEEECSEEEEEEE.EEEEEEEGGGEEEEETTEEEEEEEETT---STTTTS-EEEEEEEEEEEE CS
       AIM24 100 tgnveldikfqkgl.kglfggeglflqkltGrGlvalsgyGaiyeielkageelvvdpghlvafsgslkfdiervgglkrrligGeglflkltGpgtvl 197
                 t++v  d k+q gl k++f+geglf+++++G+G ++++++Gai++++l +ge+++vd+ghlva++ +  ++  ++gg+++ l + egl++k+tGpgtv+
  CCE29019.1 359 TQGVIKDHKRQ-GLgKAIFSGEGLFVYRISGTGIMWITSFGAIIRKDLVDGEKYIVDNGHLVAWNTKYVLERVASGGIISNLASAEGLVCKFTGPGTVF 456
                 ****8888888.6789*************************************************66666555559*********************** PP

                 EESS CS
       AIM24 198 lqsr 201
                 +q+r
  CCE29019.1 457 IQTR 460
                 **98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3407.34
//
Query:       CCE29020.1  [L=608]
Description: uncharacterized protein CPUR_02711 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4622.39
//
Query:       CCE29021.1  [L=486]
Description: uncharacterized protein CPUR_02712 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.021   15.6   9.0       0.26   12.2   0.6    3.7  2  zf-C2H2_4    C2H2-type zinc finger
      0.047   14.2   1.0      0.047   14.2   1.0    3.1  2  zf-C2H2      Zinc finger, C2H2 type
       0.13   12.7   1.4       0.69   10.4   0.5    2.6  2  OrsD         Orsellinic acid/F9775 biosynthesis cluster prote


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   2.2    0.0071        42       6      24 .]     291     309 ..     283     309 .. 0.90
   2 ?   12.2   0.6   4.4e-05      0.26       1      24 []     315     339 ..     315     339 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0071
   zf-C2H2_4   6 CgksFsskkaLlrHlkthH 24 
                 C  +++ k++++rH+kt H
  CCE29021.1 291 CESTCKGKNDWKRHVKTKH 309
                 888999999********99 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.4e-05
   zf-C2H2_4   1 fkCpiC.gksFsskkaLlrHlkthH 24 
                 ++Cp C  ksF +++ +++H+ + H
  CCE29021.1 315 YTCPECrEKSFGRRDLFRQHFIRIH 339
                 89*********88888999**9987 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   1.8      0.07   4.2e+02       5      23 .]     290     309 ..     283     309 .. 0.89
   2 ?   14.2   1.0   7.9e-06     0.047       1      23 []     315     339 ..     315     339 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.07
                 TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   5 dCgksFkrksnLkrHirt.H 23 
                 +C  ++k k + krH +t H
  CCE29021.1 290 GCESTCKGKNDWKRHVKTkH 309
                 68899999**********99 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 7.9e-06
                 EEETTTT.EEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCg.ksFkrksnLkrHirt.H 23 
                 y+Cp+C  ksF r++++++H  + H
  CCE29021.1 315 YTCPECReKSFGRRDLFRQHFIRiH 339
                 9*******************99888 PP

>> OrsD  Orsellinic acid/F9775 biosynthesis cluster protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.31   1.8e+03      82      98 ..      80      96 ..      48      99 .. 0.77
   2 ?   10.4   0.5   0.00012      0.69      42     113 ..     241     309 ..     217     310 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.31
        OrsD 82 pvyeGyrCrakakCkyl 98
                   +G++Cr + +C ++
  CCE29021.1 80 SSDTGLICRLSSSCGFS 96
                55689999999999885 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00012
        OrsD  42 tqelletvehemslrqldelareaeavslpsaesepipgLpvyeGyrC.rakakCkyltrslktlrkHlqkkh 113
                 +++  +++    sl++ +  +r+ +++++ ++++  +p L  ++ ++C  a a+C+  ++  +  ++H+++kh
  CCE29021.1 241 QERHHQDI--VVSLASSS--QRDGSNCKPCKKPDTLLPPLTSSRDLHClFAFAGCESTCKGKNDWKRHVKTKH 309
                 33334444..47788888..89999***********************9999*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.54
# Mc/sec: 2715.22
//
Query:       CCE29022.1  [L=466]
Description: related to phosphatidylinositol 4-phosphate 5-kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-05   23.6   0.0    5.7e-05   22.3   0.0    1.6  1  MMM1      Maintenance of mitochondrial morphology protein 1


Domain annotation for each model (and alignments):
>> MMM1  Maintenance of mitochondrial morphology protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.2e-09   5.7e-05     179     315 ..     310     461 ..     302     465 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3.2e-09
                 -EEEEEEEEEEEEEEEEEEEEEEESSSSSSEE---EEEEEEEEEEEEEEEEEE...E--SSS-.....................-S--------...-- CS
        MMM1 179 rLeakidvdlsDtltlgietkLllnyPkpltavLPvalavsvvrfsgtLtvslipstkaeelv..................keeeeeeeeeeeeeeeee 259
                  ++a   +  +  + l + +++ll+yP p ++ +P++l+++ + f g+  ++ i    +                         + ++e+ +++ +e++
  CCE29022.1 310 DVQAVFRIRYAGDIRLQLAAEILLDYPMPSFVGIPLKLNITGMSFDGVGVLAKIRKRVHF--CflspedalaavgsvddggI--DLDKEQGTSDGTEKN 404
                 568888888899999********************************9998887744444..34599999999999876432..333444445555666 PP

                 -S-EEEEE.E-SS-EEEEEEEEESSSSTT-TTHHHHHHHHHHHHHHHHHHHHBTT-E CS
        MMM1 260 egtalvfs.flpdyrldlsvksliGsrsklqdvPkiaslvearlkkWfeercvePrf 315
                 ++  l f   l++ +++ ++    G +  l++v k+  +v +++++ fee  v P f
  CCE29022.1 405 KAGGLRFGgLLQEIKVESEIGERDGGKQSLKNVGKVERFVLEQVRRIFEEEFVYPSF 461
                 77788885388999999999999999****************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3345.77
//
Query:       CCE29023.1  [L=238]
Description: related to VPS28 protein, involved in vacuolar traffic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-68  228.4   0.2    6.5e-68  228.2   0.2    1.1  1  VPS28     VPS28 protein
  ------ inclusion threshold ------
      0.062   13.9   0.9       0.16   12.6   0.2    2.0  2  TAF8_C    Transcription factor TFIID complex subunit 8 C-term


Domain annotation for each model (and alignments):
>> VPS28  VPS28 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.2   0.2   7.2e-72   6.5e-68       1     189 []      45     237 ..      45     237 .. 0.96

  Alignments for each domain:
  == domain 1  score: 228.2 bits;  conditional E-value: 7.2e-72
       VPS28   1 LaelysiivtleklEkaylkdaitekeYtstcnrLlsqyktilkdeevkkefksleeFvkkykldcpaAlkRlkegvpatveh......akakkskekk 93 
                 Lael+siivtl++lEka+lkdai e+eY++ c+r l+qyk++l+d+++++ef+ leeF++k++l++p+A++Rl++g+p+t+ +      +++++s+ ++
  CCE29023.1  45 LAELFSIIVTLDELEKAFLKDAIPENEYAEICERSLRQYKALLADDTIAREFEGLEEFKAKWDLQAPRATERLRVGMPSTTMTasssapSQQATSAGNN 143
                 8*****************************************************************************987777888877777778888 PP

       VPS28  94 esaklvaeatqnFITlmDalkLnlkakdqlhplLsdLveslnkleklekdfegksklvkWliklnkmkasdeLseeearqllfdlesaYkefyklL 189
                  s  l++eatq+FIT++Da+kL++ +kdqlhplLsd+++s+n++  ++kdfe++ k+v+Wli+ln+m+asdeLse++ar+l +d+++aY++f ++L
  CCE29023.1 144 PSGVLILEATQEFITFLDAVKLGMLSKDQLHPLLSDVIQSVNRV--TDKDFESRGKIVQWLITLNQMRASDELSEQQARELELDIQQAYQGFRRTL 237
                 88999***************************************..89********************************************9987 PP

>> TAF8_C  Transcription factor TFIID complex subunit 8 C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   1.7e-05      0.16      10      49 .]       9      48 ..       8      48 .. 0.96
   2 ?   -1.9   0.0      0.59   5.3e+03      24      39 ..      68      83 ..      64      85 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.7e-05
      TAF8_C 10 PppHTYkrTpvyneretdpkkirekaaeqsrlaekaLrkL 49
                P pH+Y+  +++  +++  ++++   +++ r+ +++L  L
  CCE29023.1  9 PTPHSYVPNSTFAATINLDEEVKLTETREERDLQESLAEL 48
                99***********************************765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.59
      TAF8_C 24 retdpkkirekaaeqs 39
                +e+++++i e+ ++q 
  CCE29023.1 68 PENEYAEICERSLRQY 83
                6778888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1876.65
//
Query:       CCE29024.1  [L=818]
Description: related to excision repair protein RAD4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.7e-125  417.1   0.1   6.3e-125  416.4   0.1    1.4  1  Noc2           Noc2p family
  ------ inclusion threshold ------
       0.11   12.2   0.2       0.33   10.7   0.2    1.8  1  DUF4748        Domain of unknown function (DUF4748)


Domain annotation for each model (and alignments):
>> Noc2  Noc2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.4   0.1    7e-129  6.3e-125       2     297 ..     429     737 ..     428     739 .. 0.99

  Alignments for each domain:
  == domain 1  score: 416.4 bits;  conditional E-value: 7e-129
        Noc2   2 llelvlkkvYlalvknskftsvktlplinfmknsaveLygldeavsyqhafvyIrqLAihLRnalktkkkeayksvynWqfvhsldlWsrvlsaacsk. 99 
                 ++e++lk+vY+ lv+ ++ t+ +t+++in+mknsa+eL+g+d++v y++af++IrqLAihLRn++ ++k+++++ vynWqf+hsld+Ws+vl+++cs+ 
  CCE29024.1 429 IRETALKAVYQGLVQGCRVTNHNTIQGINLMKNSAAELWGIDPSVGYTTAFTFIRQLAIHLRNSIVNNKNDSFRMVYNWQFTHSLDFWSCVLAEHCSPl 527
                 5799*********************************************************************************************** PP

        Noc2 100 ......keselkpLiypLvqvilgaikLiptaryfPlrlhlirsLlrLsestgtfIPvaplllevLeskelkkkpkkkstlkpldfevtlkvpksylkt 192
                       ke++lk LiypLvqv+lg+i+Lipta yfPlr+hl+rsLlr s++tgt+IP+a+ +levL+s+e+kk+pk+ stlk++df+v++k+pksyl+t
  CCE29024.1 528 keaeagKENQLKLLIYPLVQVTLGVIRLIPTAIYFPLRFHLVRSLLRTSRATGTYIPLASSILEVLSSAEMKKPPKA-STLKAFDFAVAYKAPKSYLRT 625
                 *****************************************************************************.9******************** PP

        Noc2 193 rvyqdglieevvellleylallsksiaFPElvlpvvvqLkrflkstk.......neklrkqlkqLvekleenskfieekRekvefspkdreeveafeke 284
                 rv+qdg+ e+v+ell e++ l+s+siaFPEl+l v++qLkr++k+++       n+kl +ql  Lv+kle+n+kfie +R+kv+f+p+dr++v+af+k+
  CCE29024.1 626 RVFQDGIGEQVIELLGEFFLLWSTSIAFPELSLAVIIQLKRWMKQARsksqgnkNAKLLSQLVILVQKLEANAKFIEGHRAKVDFAPRDRTQVAAFLKD 724
                 *********************************************888899999999****************************************** PP

        Noc2 285 lksektPlgkyvk 297
                 ++  ktPlg++v 
  CCE29024.1 725 FDVAKTPLGAFVL 737
                 ***********85 PP

>> DUF4748  Domain of unknown function (DUF4748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   3.7e-05      0.33      18      47 ..     733     762 ..     731     767 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.7e-05
     DUF4748  18 gayyfAKrsidadRaakleaerkrmrksne 47 
                 ga+++A r++ ++R + le +r+  ++ ++
  CCE29024.1 733 GAFVLAQRKVKEERTKMLEDARREDERKRK 762
                 8******************98775555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1692  (0.0943722); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.52
# Mc/sec: 4695.14
//
Query:       CCE29025.1  [L=1062]
Description: related to rho coiled-coil associated kinase alpha [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-28   97.5   0.4    4.4e-28   97.5   0.4    3.9  4  Cep57_MT_bd   Centrosome microtubule-binding domain of Cep57
    8.6e-21   73.8  18.0    4.2e-12   46.0   4.0    6.4  7  Cep57_CLD_2   Centrosome localisation domain of PPC89
     0.0029   17.5  10.9     0.0029   17.5  10.9    4.8  4  KASH_CCD      Coiled-coil region of CCDC155 or KASH
  ------ inclusion threshold ------
       0.01   14.5  40.7       0.02   13.6  40.7    1.5  1  WEMBL         Weak chloroplast movement under blue light
        3.8    8.2  41.6       0.24   12.1   5.8    6.9  7  YabA          Initiation control protein YabA
        3.9    7.5  24.0        2.5    8.2   2.0    5.1  4  DUF1664       Protein of unknown function (DUF1664)
          5    6.9  13.1        6.4    6.6   2.2    3.3  3  Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
        9.1    6.5  41.1        3.2    8.0   2.6    6.9  5  Cnn_1N        Centrosomin N-terminal motif 1


Domain annotation for each model (and alignments):
>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       6.7   1.5e+04      26      36 ..     351     361 ..     331     366 .. 0.52
   2 ?    2.6   2.2     0.084   1.9e+02      22      75 ..     373     425 ..     369     436 .. 0.77
   3 ?   -3.5   0.1       6.6   1.5e+04      20      34 ..     493     507 ..     486     515 .. 0.55
   4 !   97.5   0.4     2e-31   4.4e-28       2      77 .]     940    1015 ..     939    1015 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.7
  Cep57_MT_bd  26 hlklelqelaa 36 
                   l+l+ ++l+a
   CCE29025.1 351 GLQLQVERLEA 361
                  23333333333 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.084
  Cep57_MT_bd  22 dEfehlklelqelaaqynaldpslgkrkRkdLaeeleelvkrlEaKadqIykLy 75 
                  +E e+ +++ ++l+ ++ +l+++l++++R+  ++++e+ + + E+ +  I++L+
   CCE29025.1 373 EEKEKFRAQKKRLELEIASLQARLDEASRNLSTNKIECETVAHER-DRAIARLQ 425
                  567777888888888888888888888888888888887777777.66776665 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 6.6
  Cep57_MT_bd  20 LedEfehlklelqel 34 
                  L++E + l+ e   l
   CCE29025.1 493 LHEEHKRLRDEVHVL 507
                  444444444444433 PP

  == domain 4  score: 97.5 bits;  conditional E-value: 2e-31
  Cep57_MT_bd    2 tlrpsqspkeaLaevlkeLedEfehlklelqelaaqynaldpslgkrkRkdLaeeleelvkrlEaKadqIykLydv 77  
                   t+rpsq+p+ aLa v+k+LedE ehl+lel++l+a+yn  d+++g+r R  +ae+++ l+kr+E+K+dqIy+Lydv
   CCE29025.1  940 TMRPSQAPGYALALVIKGLEDEAEHLQLELARLQAEYNGKDKATGRRDRLHMAESIRTLLKRMEVKNDQIYSLYDV 1015
                   8**************************************************************************8 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.4       2.7     6e+03      37      63 ..     338     365 ..     332     367 .. 0.64
   2 !   42.9   6.0   1.7e-14   3.8e-11       1      64 [.     385     448 ..     385     458 .. 0.95
   3 ?    0.0  12.3      0.41   9.1e+02       8      66 ..     458     516 ..     452     518 .. 0.92
   4 !    8.1   7.9    0.0012       2.7       7      60 ..     520     573 ..     516     573 .. 0.96
   5 !   46.0   4.0   1.9e-15   4.2e-12       2      66 ..     571     635 ..     570     636 .. 0.97
   6 ?   -0.6   0.2      0.67   1.5e+03       4      16 ..     732     744 ..     731     752 .. 0.82
   7 ?   -1.8   0.3       1.6   3.5e+03      52      63 ..     960     971 ..     955     982 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.7
  Cep57_CLD_2  37 lrqLgvAyeelne.LkaevealrkELke 63 
                  l++ +++ +e  e L+ +ve+l+ + ++
   CCE29025.1 338 LQAAHDKVQEYAEgLQLQVERLEAQIRH 365
                  4444555555433588888888877766 PP

  == domain 2  score: 42.9 bits;  conditional E-value: 1.7e-14
  Cep57_CLD_2   1 LeaevktLqnrLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaevealrkELkeq 64 
                  Le e+ +Lq rLd ++r l+ + +e +++++ERd+a+ +L++A+e++ +L++++ +++kEL ++
   CCE29025.1 385 LELEIASLQARLDEASRNLSTNKIECETVAHERDRAIARLQEACEDISKLTRKLGVREKELSTS 448
                  7889********************************************************8765 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.41
  Cep57_CLD_2   8 LqnrLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaevealrkELkeqra 66 
                   + +L+ l+r l +  +++++L  +++s  +   + +ee+  L++ev +lr ++k  r+
   CCE29025.1 458 MRQDLETLRRDLISLKHTRDALELDNSSLRTDNENLHEEHKRLRDEVHVLRTKNKNARD 516
                  6889999********************************************99998776 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0012
  Cep57_CLD_2   7 tLqnrLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaevealrkE 60 
                  +L ++++sl++ + +    +++L+   d a + L  A+ee++  +++++  ++E
   CCE29025.1 520 SLATENKSLRSANDKLTVDNENLRETLDDAHHELDAAREEIETVRNKLDKVAQE 573
                  6899**********************************************9998 PP

  == domain 5  score: 46.0 bits;  conditional E-value: 1.9e-15
  Cep57_CLD_2   2 eaevktLqnrLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaevealrkELkeqra 66 
                  ++e+++L++++ sl+r++++++ e+k L++E+ +++r+ ++ +ee+ + k+ev +l+++L+ +r+
   CCE29025.1 571 AQEKSALREDNASLVRHNEKYFNENKLLRRENAGFERSVHDLHEENMKVKDEVFFLKQQLDLCRS 635
                  79***********************************************************9986 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 0.67
  Cep57_CLD_2   4 evktLqnrLdslt 16 
                  e+++L+n+++s +
   CCE29025.1 732 EKSALRNKNSSNS 744
                  799******9865 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 1.6
  Cep57_CLD_2  52 aevealrkELke 63 
                  +e e+l+ EL  
   CCE29025.1 960 DEAEHLQLELAR 971
                  444444444332 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3  13.3      0.12   2.6e+02      61     178 ..     327     439 ..     307     453 .. 0.58
   2 !   10.3  13.7   0.00021      0.47      25     128 ..     422     528 ..     416     530 .. 0.75
   3 !   17.5  10.9   1.3e-06    0.0029      11     129 ..     526     633 ..     519     640 .. 0.79
   4 ?    1.1   0.3      0.13     3e+02      91     142 ..     956    1012 ..     948    1047 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.12
    KASH_CCD  61 kaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekdelkkklkeLlkekae....Lkkqlheleellaekeallee 155
                 ++ ++ eE+  l+a   +++E ++ l+ q ++le   q    k ++  ee +k +a+k  l+  ++ L +  +e    L ++  e+       e+++ e
  CCE29025.1 327 SMDMIREEIVSLQAAHDKVQEYAEGLQLQVERLE--AQIRHGKFDAGHEEKEKFRAQKKRLELEIASLQARLDEasrnLSTNKIEC-------ETVAHE 416
                 4556777777777777777777777777777664..45556666677777777777666666666655544433111133333444.......455555 PP

    KASH_CCD 156 ktkqieeLkltieEyssiieeLr 178
                 + + i  L+ + e++s+ + +L 
  CCE29025.1 417 RDRAIARLQEACEDISKLTRKLG 439
                 55555555555555555555443 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00021
    KASH_CCD  25 skLkkavetaeetnakLt...eeieeLkkklkstQqalqkaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekde 120
                 ++L++a e +  +  kL     e++  +k+l st q  q  + l  +l  lk++   le  + +l + n++l  e++ L+ +++ L  +n+  + e   
  CCE29025.1 422 ARLQEACEDISKLTRKLGvreKELSTSQKRLESTEQMRQDLETLRRDLISLKHTRDALELDNSSLRTDNENLHEEHKRLRDEVHVLRTKNKNARDEDGS 520
                 567777777777777875222466666788888888888888888888888888888888888888888888888888888888888888888877777 PP

    KASH_CCD 121 lkkklkeL 128
                 l++  k L
  CCE29025.1 521 LATENKSL 528
                 76666555 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 1.3e-06
    KASH_CCD  11 adLqlnNkkLaeenskLkkavetaeetnakLteeieeLkkklkstQqalqkaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqe 109
                 ++L+ +N kL  +n+ L+++++ a  +     eeie  ++kl      +q++ +l e+++       +l  ++++  ++nk l +en   +  +++L e
  CCE29025.1 526 KSLRSANDKLTVDNENLRETLDDAHHELDAAREEIETVRNKLDK---VAQEKSALREDNA-------SLVRHNEKYFNENKLLRRENAGFERSVHDLHE 614
                 67899999999999999999988888888888999999998853...3445555555554.......445567789999******************** PP

    KASH_CCD 110 enikllaekdelkkklkeLl 129
                 en+k++ e  +lk++l +L+
  CCE29025.1 615 ENMKVKDEVFFLKQQL-DLC 633
                 ********99998876.555 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.13
    KASH_CCD   91 kqlekenqsLiakiesLqee.niklla....ekdelkkklkeLlkekaeLkkqlhel 142 
                  k le e ++L+ +++ Lq e n k +a    ++ ++++ ++ Llk  +    q+++l
  CCE29025.1  956 KGLEDEAEHLQLELARLQAEyNGKDKAtgrrDRLHMAESIRTLLKRMEVKNDQIYSL 1012
                  568888888888888888662444322111144455566666666664444566554 PP

>> WEMBL  Weak chloroplast movement under blue light
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6  40.7   9.1e-06      0.02      81     421 ..     330     677 ..     301     760 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.1e-06
       WEMBL  81 eLklnLekaqteeaqAkqdselaklrveemeqgias...eesvaakaqlevakerhaaavaeLks....vkeeLeslqkeyaslvserdaaikkaeeav 172
                  ++ ++   q+++++ ++ +e  +l+ve +e  i +   ++    k++  + k+r +  +a L++      ++L++ + e +++++erd ai++ +ea+
  CCE29025.1 330 MIREEIVSLQAAHDKVQEYAEGLQLQVERLEAQIRHgkfDAGHEEKEKFRAQKKRLELEIASLQArldeASRNLSTNKIECETVAHERDRAIARLQEAC 428
                 5555666677788888888999999999999999773224556678888889999888888777522226677999999******************** PP

       WEMBL 173 saskevekaveeltielialkesLesahaahleaeEkrl.gaalareqdklnwek.....eLkqaeeelqrLneellsakdlkskletasallldLkae 265
                     +  +++     el ++++ Les+    ++ e  r   ++l + +d l++++     + ++  ee +rL++e+++ +  +++   +   l+  ++ 
  CCE29025.1 429 EDISKLTRKLGVREKELSTSQKRLESTEQMRQDLETLRRdLISLKHTRDALELDNsslrtDNENLHEEHKRLRDEVHVLRTKNKNARDEDGSLATENKS 527
                 999999999999999********************9655157898888877765421111667788899999999998777777776677777777777 PP

       WEMBL 266 LaayvesklkeeaeeeeeekksetsikealasarkELeevkaniekakdevklLkvaaasLrseLekekaeLaslrqregmasiavssLeaelsrtkse 364
                 L    ++  +    ++e+ +++  ++++ l+ ar+E+e v+ +++k+ +e ++L+   asL    ek  +e + lr++++    +v+ L++e  ++k e
  CCE29025.1 528 LRSANDKL-T---VDNENLRETLDDAHHELDAAREEIETVRNKLDKVAQEKSALREDNASLVRHNEKYFNENKLLRRENAGFERSVHDLHEENMKVKDE 622
                 66544433.3...33455689999999************************************999999999999999888899*************** PP

       WEMBL 365 lelvqakekearek.mvelpkeLqeAaqeaeeAkslAqaareelrkakeeaeqakaav 421
                 + +++++    r    ++ p+ +    +e+ee  ++A ++ +   k   e ++a+a+ 
  CCE29025.1 623 VFFLKQQLDLCRSPsQADGPRRV---EEETEENMTSAFFVPDITVKKNGEKNEARAEE 677
                 *9998877665443244455444...45666667777777777777777777777765 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.8       0.2   4.6e+02      17      66 ..     328     378 ..     319     387 .. 0.58
   2 ?    0.0   3.2       0.6   1.4e+03      10      64 ..     356     408 ..     346     454 .. 0.62
   3 ?    8.4   6.1    0.0014       3.2       7      56 ..     452     501 ..     440     517 .. 0.64
   4 ?   12.1   5.8   0.00011      0.24       3      78 ..     497     572 ..     495     574 .. 0.92
   5 ?    5.8   7.3    0.0094        21       2      64 ..     538     600 ..     537     657 .. 0.76
   6 ?   -0.1   0.2      0.63   1.4e+03      31      59 ..     955     983 ..     948    1003 .. 0.66
   7 ?   -1.9   0.1       2.3   5.2e+03       6      43 ..     998    1035 ..     991    1039 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......XXXXXXXXXXXXXX CS
        YabA  17 leelleeleelkeelaelleenaeLeleneklrerl.......eeeekkekekkkel 66 
                 ++ + ee+ +l+++  ++ e  + L+l+ e+l  ++              +e+k++ 
  CCE29025.1 328 MDMIREEIVSLQAAHDKVQEYAEGLQLQVERLEAQIrhgkfdaG------HEEKEKF 378
                 55566777788888888888888888888888877754333221......2222222 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.6
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXX CS
        YabA  10 leeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkk 64 
                 +e+le q+++   ++++ +ee ++   + ++Lele  +l+ rl+e++++ +++k 
  CCE29025.1 356 VERLEAQIRHG--KFDAGHEEKEKFRAQKKRLELEIASLQARLDEASRNLSTNKI 408
                 55555555543..344445566666677777888888888777444443333332 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXX CS
        YabA   7 fdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeee 56 
                 +++ e++ ++le+l ++l +lk++  +l  +n++L+++ne+l+e+ ++ +
  CCE29025.1 452 LESTEQMRQDLETLRRDLISLKHTRDALELDNSSLRTDNENLHEEHKRLR 501
                 45566777777777777777777777777777777777777777663322 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA   3 kkelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegkenLarlYe 78 
                 +k l d+++ l ++ ++  +e ++l +e ++l   n++L+++ne+lre+l++++++ ++ ++e+++ +++L ++ +
  CCE29025.1 497 HKRLRDEVHVLRTKNKNARDEDGSLATENKSLRSANDKLTVDNENLRETLDDAHHELDAAREEIETVRNKLDKVAQ 572
                 5778999999****************************************99999999999999999999998766 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.0094
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXX CS
        YabA   2 dkkelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkk 64 
                 d+++l ++l++ +++l++  ee+e+++++l ++ +e ++L+ +n +l ++ e+  +++k  ++
  CCE29025.1 538 DNENLRETLDDAHHELDAAREEIETVRNKLDKVAQEKSALREDNASLVRHNEKYFNENKLLRR 600
                 778889999999999999999999999999999999999999999988777444444433333 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.63
                 HHHHHHHHHHHHHHHHHHHHHHXXXXXXX CS
        YabA  31 laelleenaeLeleneklrerleeeekke 59 
                 ++ l +e ++L+le  +l+ + + ++k++
  CCE29025.1 955 IKGLEDEAEHLQLELARLQAEYNGKDKAT 983
                 67788899999999999998884444333 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 2.3
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA    6 lfdkleeleeqleelleeleelkeelaelleenaeLel 43  
                  l++++e  ++q+ +l++ le  k++ ++++ee+ e+++
  CCE29025.1  998 LLKRMEVKNDQIYSLYDVLEGQKAAGQAMTEEEVEMTV 1035
                  56666666778888888888888888888888877765 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.039        88      80     117 ..     326     363 ..     303     366 .. 0.69
   2 ?    5.7   1.4    0.0066        15      55     120 ..     376     445 ..     372     449 .. 0.68
   3 ?    1.6   3.5      0.12   2.6e+02      49     116 ..     444     510 ..     423     517 .. 0.57
   4 ?    8.2   2.0    0.0011       2.5      48     102 ..     526     580 ..     518     594 .. 0.50

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.039
     DUF1664  80 eiskeikeevtevredlseigedvesvkeavegleskl 117
                      i+ee+ +++   ++++e  e ++  ve le+++
  CCE29025.1 326 VSMDMIREEIVSLQAAHDKVQEYAEGLQLQVERLEAQI 363
                 44556777777777777777777777777777777766 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0066
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeikeevtevred....lseigedvesvkeavegleskleri 120
                 e+ +a+k++L+ +i++++++lde ++  +  k e ++v ++    +++++e  e ++++ ++l+ + +++
  CCE29025.1 376 EKFRAQKKRLELEIASLQARLDEASRNLSTNKIECETVAHErdraIARLQEACEDISKLTRKLGVREKEL 445
                 78899******************99877666666555554401125666666666666666666555555 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.12
     DUF1664  49 qleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesk 116
                 +l + ++ l++t +++ ++++++ + l + k++  +++ + +++r d ++++e+ + +++ v+ l +k
  CCE29025.1 444 ELSTSQKRLEST-EQMRQDLETLRRDLISLKHTRDALELDNSSLRTDNENLHEEHKRLRDEVHVLRTK 510
                 333333333333.3455666666666666666666666666777777777777777776666666655 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0011
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseiged 102
                 k+l +  ++l+   ++L + +d   ++ld+  e ++ +++++++v ++ s+++ed
  CCE29025.1 526 KSLRSANDKLTVDNENLRETLDDAHHELDAAREEIETVRNKLDKVAQEKSALRED 580
                 3344444444444444444444444444444444444444444444444444444 PP

>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2     0.005        11     122     172 ..     383     433 ..     336     438 .. 0.87
   2 ?    0.8   1.0      0.17   3.9e+02     114     170 ..     458     514 ..     440     518 .. 0.74
   3 ?    6.6   2.2    0.0029       6.4     120     173 ..     520     573 ..     494     576 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.005
  Bacillus_HBL 122 kqlikeLkklklklakdsknFktdvdeltsilagdsgvisqlqneiedlqg 172
                   k+l  e+ +l+ +l++ s+n++t++ e + + +  +  i+ lq++ ed+ +
    CCE29025.1 383 KRLELEIASLQARLDEASRNLSTNKIECETVAHERDRAIARLQEACEDISK 433
                   55566889999999***********99999999999999999999998865 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.17
  Bacillus_HBL 114 iqqnqkevkqlikeLkklklklakdsknFktdvdeltsilagdsgvisqlqneiedl 170
                   + q  ++ ++++  Lk+ +++l+ d++++ td ++l +  +    ++  l+ +++++
    CCE29025.1 458 MRQDLETLRRDLISLKHTRDALELDNSSLRTDNENLHEEHKRLRDEVHVLRTKNKNA 514
                   444556788899999999**************9999988887777777777777665 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0029
  Bacillus_HBL 120 evkqlikeLkklklklakdsknFktdvdeltsilagdsgvisqlqneiedlqgk 173
                   +  +  k L++ ++kl+ d++n+ +++d +   l +   +i++++n++ ++ ++
    CCE29025.1 520 SLATENKSLRSANDKLTVDNENLRETLDDAHHELDAAREEIETVRNKLDKVAQE 573
                   45566678999999*********************************9998765 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   2.7     0.013        29      18      67 ..     351     404 ..     338     410 .. 0.86
   2 ?   -3.3  12.8       4.9   1.1e+04      73      73 .]     452     452 ..     384     511 .. 0.52
   3 ?    7.1   1.8    0.0028       6.2      24      66 ..     505     553 ..     503     560 .. 0.54
   4 ?    8.0   2.6    0.0014       3.2      24      63 ..     591     634 ..     556     639 .. 0.85
   5 ?   -0.8   0.1      0.81   1.8e+03      41      64 ..     958     981 ..     954    1000 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.013
      Cnn_1N  18 dLKLriyfLeerleklse....eqkeellkenielkveveslqkelkekkkllr 67 
                 +L+L++  Le ++  ++     e+ke+  ++   l+ e++slq  l+e  + l 
  CCE29025.1 351 GLQLQVERLEAQIRHGKFdaghEEKEKFRAQKKRLELEIASLQARLDEASRNLS 404
                 79999999999977776668889************************9999886 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.9
      Cnn_1N  73 i 73 
                 +
  CCE29025.1 452 L 452
                 2 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0028
      Cnn_1N  24 yfLeerleklse......eqkeellkenielkveveslqkelkekkkll 66 
                 + L+ + ++ ++      +++++l + n +l v++e+l+ +l+  + +l
  CCE29025.1 505 HVLRTKNKNARDedgslaTENKSLRSANDKLTVDNENLRETLDDAHHEL 553
                 5666665555553444445555555666666666666666655555555 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0014
      Cnn_1N  24 yfLeerleklse....eqkeellkenielkveveslqkelkekk 63 
                 yf e++l ++++    +++ +l++en+++k+ev  l+++l+ ++
  CCE29025.1 591 YFNENKLLRRENagfeRSVHDLHEENMKVKDEVFFLKQQLDLCR 634
                 6777777777777777999*******************998776 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.81
      Cnn_1N  41 llkenielkveveslqkelkekkk 64 
                 l++e   l+ e++ lq e + k+k
  CCE29025.1 958 LEDEAEHLQLELARLQAEYNGKDK 981
                 455555666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1062 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2340  (0.130515); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        70  (0.00390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.74u 0.36s 00:00:02.10 Elapsed: 00:00:00.60
# Mc/sec: 5311.55
//
Query:       CCE29026.1  [L=619]
Description: uncharacterized protein CPUR_02717 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-20   72.6   5.7      1e-18   68.0   4.4    3.2  2  Glyco_hydro_76  Glycosyl hydrolase family 76


Domain annotation for each model (and alignments):
>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.03   5.4e+02      83     120 ..     152     187 ..      75     196 .. 0.78
   2 !   68.0   4.4   5.6e-23     1e-18     113     315 ..     212     455 ..     192     482 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.03
                     SSEHHHHHHHHHHHHHHHHH.....H--HHHHHHHHHH CS
  Glyco_hydro_76  83 tegnDDqafwglaamtaaernfpeptdepswLalAqav 120
                     +e +DD  +++l  ++a +  f++  +  ++ ++A++ 
      CCE29026.1 152 DEAYDDVLWVVLGWLEAIK--FTQLHSTLHYPKRAKQC 187
                     7899********9999998..67778889999999876 PP

  == domain 2  score: 68.0 bits;  conditional E-value: 5.6e-23
                     HHHHHHHHHHHHHHCB-SCSCCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHHHHHH.................--CHHHHHHHHHHHHHHHHS CS
  Glyco_hydro_76 113 wLalAqavfntqasrwdeetcgGGlrWqiftwnsgydyknsisngplfqlaarLaryt.................gnetYlewAekvwdWvedvg 190
                     + ++A+ ++++  + wd+  c GG+ W+     +   ykn+i n     ++  ++++                  ++  Yl  A   ++W++d++
      CCE29026.1 212 FADRARTFWDFATKGWDTRLCLGGMLWNP----KLEPYKNAITNELWISASTSMYEHFpkdrvdkswtmskgletQDPVYLSAAVTAYKWLQDIN 302
                     6689***********************87....7778******************997788888888899999878888**************** PP

                     CSBTTTS-B-SEEE......TTTCCEEEE---HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH...HHHCEEC.................. CS
  Glyco_hydro_76 191 liddedwlvyDgas......vednctdinklqwtYnqGtylsgaaylynaTgdekWldrvkgllnat...lstffpd.................. 258
                     +  +  +l+ Dg +      ++ +c+  +++ +tYnqG++l+g   l+ +Tg+ ++l++ ++l++++     + +++                  
      CCE29026.1 303 MT-NPLGLYTDGFHmdktkpDNLKCGIRDEMVYTYNQGVILTGLRGLFTITGSPSYLEDGHALVQNAikaTGWNLSKntpvddiknpnngqlppw 396
                     *7.999999999988888777788999*******************************9988888775322233333678888999999999999 PP

                     .....TTEEEEEE-TTSTTCCTTHHHHHHHHHHHHHHHH..SHHHHHHHHHHHHHHHHHHHT CS
  Glyco_hydro_76 259 .....gnilyevacepsekcnnDqrsFkgilarwlaltaqlapetadtiepllrasaeaaak 315
                             + e ac ++++c +D ++Fkgi+++ l  ta  ap  +++ e   + + ++a k
      CCE29026.1 397 rglgrY-GILEDACDSDSECSQDAQTFKGIFFHHL--TAFCAPLEQSQLERHAKVNQNKAFK 455
                     998844.455779999999**************87..6677776666666655555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4351.75
//
Query:       CCE29027.1  [L=455]
Description: related to pentafunctional arom polypeptide [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-53  181.1   0.0    3.1e-53  180.6   0.0    1.1  1  DHQ_synthase  3-dehydroquinate synthase
      1e-11   45.1   0.0    1.5e-11   44.5   0.0    1.2  1  Fe-ADH_2      Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.6   0.0   3.5e-57   3.1e-53       7     245 ..      86     332 ..      80     351 .. 0.94

  Alignments for each domain:
  == domain 1  score: 180.6 bits;  conditional E-value: 3.5e-57
                   SGGGCCHHHHHHHHHHHHHTT--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE---SEEEEEGG CS
  DHQ_synthase   7 geksKsletlekildalleakleRksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafaqPkavlidle 103
                   gek K++etl +i+d + + ++ Rk+ ++++GGG v+D+aGf+ a y+R  +++++Ptt+++ +D+sv  K+a+n+   KN +Ga++ P+  ++d++
    CCE29027.1  86 GEKAKTMETLLSIVDSMNDFGVFRKEPVLVVGGGLVTDVAGFACASYRRNTNYIRIPTTVIGLIDASVSIKVAVNYGGCKNRLGAYHAPQHTFLDFT 182
                   9************************************************************************************************ PP

                   GGGGS-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHC.........TTTHHHHHHHHHHHHHHHHHHHHHCCTTTTGGGGGGTTHHHHHHHHH CS
  DHQ_synthase 104 vLktLperelraGlaEviKyalikdeelfelleenaeallk.........eeeeealeeliarsievkaevveeDekekglralLnlGHtigHaiEa 191
                   +L+tLp  ++r+G+aE+iK++ ++d+++f+ll +  e++++          e + a++++ ++ i    +  + + +e  l +++ +GHt +   E 
    CCE29027.1 183 FLRTLPVGQIRNGFAELIKISSCADKTTFDLLDKYCEQMITtafgrlessDEIKVAADKICKAGIYEMLKLETPNLHEIMLDRVIAYGHTWSPLHEL 279
                   ***********************************99999999*9998765566777788888899999999999********************** PP

                   HHTTTTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT CS
  DHQ_synthase 192 llgyekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkel 245
                   + ++  l+HG+a++i+m++ a+ls+k +ll++e+  rll+l++++gl +++++ 
    CCE29027.1 280 VPNP-PLRHGHAISIDMAYSATLSRKRNLLTEEDHMRLLRLFSRAGLSMDHPQF 332
                   ****.********************************************99987 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.7e-15   1.5e-11      17     188 ..      46     224 ..      36     267 .. 0.76

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 1.7e-15
    Fe-ADH_2  17 lelkkvllvadentkkaagekveeslkeagikvevveev..eeeadleeveklvealre...ketdlvvavGgGtiiDiaky..vsaklnvpyvsvpTa 108
                 +++++ l v+d n+  ++g++++ ++++++ik+++++++  e+++++e+  ++v+ ++     + + v+ vGgG + D+a +  +s+++n +y+ +pT+
  CCE29027.1  46 QKWQRCLAVMDYNIFTLYGKAIQAYFDHHQIKLTIHKTMigEKAKTMETLLSIVDSMNDfgvFRKEPVLVVGGGLVTDVAGFacASYRRNTNYIRIPTT 144
                 5789999*************************9977776224555899999998888632335678899***********8733699***********9 PP

    Fe-ADH_2 109 aS..vDGfaspgaslvvdgkkrtvakaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaam 188
                      D   s  +++   g k  +   +aP   ++D ++l++ P   ++ G+++l+ k+++ ad    + + ++++++ +++
  CCE29027.1 145 VIglIDASVSIKVAVNYGGCKNRLGAYHAPQHTFLDFTFLRTLPVGQIRNGFAELI-KISSCADKTTFDLL-DKYCEQMITT 224
                 8533677777777777779****97889**************************99.78888876655433.3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3289.32
//
Query:       CCE29028.1  [L=325]
Description: probable catechol O-methyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-13   49.4   0.0    1.2e-12   48.7   0.0    1.3  1  Methyltransf_24  Methyltransferase domain
      5e-09   35.6   0.0    7.9e-09   35.0   0.0    1.3  1  Methyltransf_3   O-methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.4e-16   1.2e-12       1     105 [.     128     237 ..     128     238 .. 0.93

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.4e-16
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare....aglddrvrlikadseealasla....agsiDllfiDgghaaeavle 86 
                      vE+G y G+s++++++a+r++g  + ++++h+p   e+  ++r     agl d+v++i +ds e l++l+      +iDllf+D  h +  +l+
       CCE29028.1 128 VELGGYVGYSAILFADAVRAAGGKHFYCLEHNP---EFFSIIRMlcelAGLGDFVTVIYGDSAECLRQLKsqglFTQIDLLFLD--HYKPLYLR 216
                      8********************************...988899988889**********************8888778*******..99****** PP

  Methyltransf_24  87 dleallp..rlapggvvlfdD 105
                      dl+++++   ++pg++++ d+
       CCE29028.1 217 DLKLCEElgFINPGTTLVADN 237
                      *****7644899******998 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   8.8e-13   7.9e-09      52     162 ..     128     242 ..     110     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 8.8e-13
                     EEE--TTSHHHHHHHTTS-TT-..EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHHHTSSS---EEEEEE-S-GGGHHHHHHHHH CS
  Methyltransf_3  52 leiGvftGyslLatalalPeDG..kilaididreayeialkfiqkagvaekieliegdalkvLeelvkdkklpefDfifvDaDkssyvnyyekll 144
                     +e+G + Gys++  a a+   G  +  +++ ++e   i + + + ag+++ + +i gd+ + L +l+++   ++ D++f+D  k  y +  + + 
      CCE29028.1 128 VELGGYVGYSAILFADAVRAAGgkHFYCLEHNPEFFSIIRMLCELAGLGDFVTVIYGDSAECLRQLKSQGLFTQIDLLFLDHYKPLYLRDLKLCE 222
                     79***************988764457899****************************************************98888888777664 PP

                     HT..EEEEEEEEEE-TTGGG CS
  Methyltransf_3 145 eL..vkvGgliaiDntLWeG 162
                     eL  +  G  ++ Dn++  G
      CCE29028.1 223 ELgfINPGTTLVADNVIKPG 242
                     43337778888888876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2377.36
//
Query:       CCE29029.1  [L=494]
Description: uncharacterized protein CPUR_02720 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.058   12.9   0.0       0.11   12.0   0.0    1.4  1  Epimerase  NAD dependent epimerase/dehydratase family
       0.16   11.4   0.1       0.26   10.7   0.1    1.3  1  adh_short  short chain dehydrogenase
       0.31   10.8   3.5       0.66    9.8   3.5    1.4  1  FixP_N     N-terminal domain of cytochrome oxidase-cbb3, FixP


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.8e-05      0.11       1      39 [.      56      94 ..      56     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntar 39
                +lVtG++   G a+++ l ++g++vig dr++ +s + +
  CCE29029.1 56 VLVTGVSMSKGLAIARLLHQQGHTVIGADRYQLSSGRVS 94
                79****************************976665544 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   4.3e-05      0.26       1      34 [.      54      87 ..      54     103 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.3e-05
                SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCH CS
   adh_short  1 kvvlvtGassGIGraiakelakeGakvvvvdrse 34
                k vlvtG s   G+aia+ l ++G +v+ +dr +
  CCE29029.1 54 KKVLVTGVSMSKGLAIARLLHQQGHTVIGADRYQ 87
                789*************************998865 PP

>> FixP_N  N-terminal domain of cytochrome oxidase-cbb3, FixP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.5   0.00011      0.66      10      25 ..     448     463 ..     445     467 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00011
      FixP_N  10 DGIrElnnplPrWWly 25 
                 DGI El  p+P WW+y
  CCE29029.1 448 DGIWELSDPVPFWWTY 463
                 89************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3720.83
//
Query:       CCE29030.1  [L=576]
Description: probable ILV1-anabolic serine and threonine dehydratase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-75  254.1   0.6    2.4e-75  253.7   0.6    1.1  1  PALP            Pyridoxal-phosphate dependent enzyme
    3.4e-41  138.9   0.0    2.3e-20   72.2   0.0    2.3  2  Thr_dehydrat_C  C-terminal regulatory domain of Threonine deh


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.7   0.6   2.7e-79   2.4e-75       5     292 ..      83     371 ..      79     373 .. 0.96

  Alignments for each domain:
  == domain 1  score: 253.7 bits;  conditional E-value: 2.7e-79
                 SSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-E CS
        PALP   5 igpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGae 103
                  + TPl ++ +ls +l ++++lK+E+++p  SfK+Rga++ +a+l++  + k+vv++s+GNh++++A+ a++l++++ti +p+++++ k     +lG +
  CCE29030.1  83 CKVTPLTHAINLSNRLECKVLLKREDTQPVFSFKLRGAYNKMAHLDRSVSWKGVVCCSAGNHAQGVAYSARKLKIPATIIMPEGTPSIKHTNVARLGGH 181
                 678************************************************************************************************ PP

                 EEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTT.TTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTC CS
        PALP 104 vvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlg.gkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalars 201
                 vv+ g d+d+a++ +a+ a++ +g +++++fd+p+vi+g+gtig E+  q++  +++a+++++GgGgl aGi++++k   p+v++i+ve+  ++ala+s
  CCE29030.1 182 VVLHGADFDAAKEECARRAKQ-DGLINIPPFDDPYVIAGQGTIGSELFGQVNmANVEAIFCCAGGGGLTAGIGFYVKRMAPHVKIIAVEAYDANALAQS 279
                 *********************.**************************99999********************************************** PP

                 CS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCTTCEEEEEEE CS
        PALP 202 lragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelkegdrvvvil 292
                 lr+g+rv +++   +adg av++ +e++f+l+++ vd++++v+++e+++a++ ++ +++  +ep++a +la+l k ++++  +++ r+++ +
  CCE29030.1 280 LRKGERVVLKEVGLFADGAAVKTLGEETFRLCKEVVDDVIEVTTDEICAAIKDMYDDTRSGLEPAGALSLAGLkKYVSQNPSQDSNRTLIAV 371
                 *************************************************************************7777776666666776655 PP

>> Thr_dehydrat_C  C-terminal regulatory domain of Threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   5.7e-22   5.1e-18       1      91 []     387     481 ..     387     481 .. 0.91
   2 !   72.2   0.0   2.5e-24   2.3e-20       2      91 .]     486     574 ..     485     574 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 5.7e-22
                     HHHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   1 eraevgegleallavefpeqpGaLkkFlellggrndiTlfeYrkagekngkvLvgvevs.....qaeeldelierleklgykvedlsknellkeh 90 
                     era+vgeg+e ll+v +pe+pGa+ k ++++ + + +T+f+Yr+a+e +++v++g +++     ++ee   l erl++ +++v dls +el+k h
      CCE29030.1 387 ERAAVGEGKEVLLSVSIPERPGAFAKLIDTIMPYA-VTEFSYRYADETTANVMIGLSLKaqapqRQEEVRMLLERLRSEDMEVMDLSGDELAKSH 480
                     89*********************************.********************9963222134568889*********************99 PP

                     X CS
  Thr_dehydrat_C  91 l 91 
                     l
      CCE29030.1 481 L 481
                     8 PP

  == domain 2  score: 72.2 bits;  conditional E-value: 2.5e-24
                     HHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   2 raevgegleallavefpeqpGaLkkFlellggrndiTlfeYrkagekngkvLvgvevsqaeeldelierleklgykvedlsknellkehl 91 
                     ++ ++ ++e+++++ fpe+pGaL +Fl++l +r  iTlf+Yr+ g + +kvL+g++ ++ +++ el++ l++l+y + d +++ l++++l
      CCE29030.1 486 GGRSNVANEKIYMFSFPERPGALERFLKTLRPRFTITLFHYRNYGGDIAKVLAGISCPE-QDSGELAQFLHDLDYPFTDCTNSGLYQKFL 574
                     6678999***************************************************5.555***********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4546.27
//
Query:       CCE29031.1  [L=1051]
Description: related to F-box protein PpaB [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-35  121.7   2.8    3.7e-35  121.7   2.8    2.7  3  cNMPbd_u2     Unstructured region on cNMP-binding protein
    7.2e-33  112.5   0.0    4.1e-19   68.5   0.0    2.6  2  cNMP_binding  Cyclic nucleotide-binding domain
      7e-09   35.0   2.6       0.24   11.6   0.0    6.0  6  LRR_6         Leucine Rich repeat
    1.9e-08   34.0   2.6    1.9e-08   34.0   2.6    3.9  4  F-box         F-box domain
    2.8e-07   30.8   0.1       0.48   10.9   0.0    4.4  4  LRR_4         Leucine Rich repeats (2 copies)
    3.2e-07   30.1   1.4    1.2e-06   28.3   0.3    2.6  2  F-box-like    F-box-like
      0.005   17.2   5.7         20    6.3   0.0    6.3  7  LRR_1         Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> cNMPbd_u2  Unstructured region on cNMP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   2.1         7   1.8e+04      95     117 ..       3      29 ..       2      60 .. 0.48
   2 !  121.7   2.8   1.4e-38   3.7e-35       1     156 [.     403     553 ..     403     556 .. 0.86
   3 ?   -2.7   3.7       2.8     7e+03     118     150 ..     723     753 ..     709     761 .. 0.54

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 7
   cNMPbd_u2  95 rsRRgSlAPptpes..sresspts..k 117
                 rsR +S A p  +   ++++++ts  +
  CCE29031.1   3 RSRSHSSASPFRALahHQQAASTSaaN 29 
                 666666666655443312222222221 PP

  == domain 2  score: 121.7 bits;  conditional E-value: 1.4e-38
   cNMPbd_u2   1 irsqVEetAreRlktasdeDvemadae..sstptssieelaiadlkktsarrkslpevtftepskldspkseddeevlePsDPDPFLsvdldnlRsrsR 97 
                 ++sqVEetAr R+k +++eD++m+d +  ++++ts+++el     ++++ ++  l+++ f++p ++ sp+ +dd e++eP+DPDPFLsv+++nlR+r R
  CCE29031.1 403 LKSQVEETARLRWKPQDEEDTNMTDLDatKQSDTSPNSEL----SAPSTPSKGLLANLAFASPGSQGSPN-KDDFELMEPKDPDPFLSVNMENLRNR-R 495
                 69***********************886566689999999....78999**************9999999.99************************.* PP

   cNMPbd_u2  98 RgSlAPptpessressptskeessssssetssPklkskhsltppeesearakrartlsr 156
                 R+SlAPp+p + +   + +++  ++s      P+   + s+ + +e  + +krart ++
  CCE29031.1 496 RHSLAPPLPLTAEGVVTGRTNGYRASLVDLIGPT-IRSGSSDTSSECGVPSKRARTATS 553
                 ***********66666666788888888888894.444444444488888899998765 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.8
   cNMPbd_u2 118 eessssssetssPklkskhsltppeesearakr 150
                 +++++ ++++ssP  +++++++p + +ea++kr
  CCE29031.1 723 TPPTTATTTSSSP--STATATQPRQAEEATKKR 753
                 4555556666666..233333333333344444 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   1.6e-22   4.1e-19       5      86 ..      96     174 ..      93     177 .. 0.95
   2 !   41.4   0.0   4.4e-14   1.1e-10       3      88 ..     299     398 ..     297     399 .. 0.78

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 1.6e-22
                   -TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHH CS
  cNMP_binding   5 kagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflell 86 
                   ++++ i+++Gd a+ +y +++G v+v  +s+dg+  v a+l+pG++fGe+++l + prtat+vA+  + ll+l+r+d++ ++
    CCE29031.1  96 APNDHIITEGDDAKAMYWLVRGVVAV--TSRDGEA-VYAELKPGAFFGEIGVLMNMPRTATIVARAKCLLLVLKREDLHTVI 174
                   589***********************..99***66.******************9***********************9886 PP

  == domain 2  score: 41.4 bits;  conditional E-value: 4.4e-14
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEE.......EEETTS.....EEEEE......EE-TTEEESHHHHHHTS-.-SSEEEESSTEEEEEEEHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvy.......rlsedg....kevvla......vlgpGdlfGelalltgep.rtatvvAltdsellalprdd 81 
                    +++   i+ qG++++++y++++Ge++v        +           ++++      +l++G++fGe+a l+ +p rtatv+++t++e+l++p + 
    CCE29031.1 299 TYHPFVDIISQGTTGNEIYLIVQGEAEVIhdeskptH----PrphsTATTVEsiqprpRLKAGQYFGEVASLGLSPgRTATVRSITTVECLVVPGEI 391
                   67777789********************845544442....0443333355533355566************77888******************** PP

                   HHHHHHH CS
  cNMP_binding  82 flellqq 88 
                   ++el+++
    CCE29031.1 392 LDELWRK 398
                   **99876 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   9.3e-05      0.24       2      24 .]     770     793 ..     769     793 .. 0.91
   2 !    6.5   0.0    0.0038       9.8       2      19 ..     797     815 ..     796     818 .. 0.91
   3 ?   -0.1   0.0      0.51   1.3e+03       5      23 ..     827     846 ..     826     847 .. 0.87
   4 !    9.6   0.1   0.00039         1       4      17 ..     852     866 ..     850     869 .. 0.90
   5 ?    0.6   0.0      0.31   7.9e+02       3      24 .]     877     900 ..     875     900 .. 0.83
   6 ?   -3.8   0.0         7   1.8e+04       8      21 ..     909     923 ..     909     924 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.3e-05
       LRR_6   2 nthLteLdLsgNd.IgDeGaeaLa 24 
                 +++L +LdLs+++ I+D  +  La
  CCE29031.1 770 CPKLSKLDLSYCKhITDRSMAHLA 793
                 899**************9998886 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0038
       LRR_6   2 nthLteLdLsgNd.IgDeG 19 
                 ++ L++L+L+ +  I+D G
  CCE29031.1 797 SSRLRSLSLTRCTsITDIG 815
                 688**************87 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.51
       LRR_6   5 LteLdLsgNd.IgDeGaeaL 23 
                 Lt+L L+++  ++D  + aL
  CCE29031.1 827 LTHLCLADCTyLSDNAIVAL 846
                 99999****99999988887 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00039
       LRR_6   4 hLteLdLsgNd.IgD 17 
                 +Lt+LdLs+++ ++D
  CCE29031.1 852 KLTHLDLSFCCaLSD 866
                 7**********9998 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.31
       LRR_6   3 thLteLdLsgNd..IgDeGaeaLa 24 
                 + L+eL +++++  ++D+ +e++a
  CCE29031.1 877 PFLKELRMAFCGsaVSDKSLESIA 900
                 679********9888888888876 PP

  == domain 6  score: -3.8 bits;  conditional E-value: 7
       LRR_6   8 LdLsgNd.IgDeGae 21 
                 L+++g+  +++ G+e
  CCE29031.1 909 LSVRGCVrVTGRGLE 923
                 789999999999987 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.9   7.5e+03       2      14 ..      57      69 ..      56      69 .. 0.86
   2 ?   -0.6   0.3      0.51   1.3e+03       2      12 ..     279     289 ..     278     290 .. 0.85
   3 !   34.0   2.6   7.4e-12   1.9e-08       4      44 ..     561     601 ..     559     604 .. 0.91
   4 ?    1.8   0.4     0.093   2.4e+02      15      31 ..     853     869 ..     853     871 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.9
                HHHHS-HHHHHHH CS
       F-box  2 tlsrLPsevlrhI 14
                t+ ++P+++++ I
  CCE29031.1 57 TIRDMPLDLVERI 69
                6789*****9998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.51
                 HHHHS-HHHHH CS
       F-box   2 tlsrLPsevlr 12 
                  +s+LP+e l+
  CCE29031.1 279 LFSNLPPEMLH 289
                 69******985 PP

  == domain 3  score: 34.0 bits;  conditional E-value: 7.4e-12
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwc 44 
                   L +e+l +I+++L+ ++ll+lr+VS +wr l+ s +  c
  CCE29031.1 561 PALNDELLVQIFKHLDIKELLRLRLVSSHWRHLLTSSSKVC 601
                 5699******************************9998877 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.093
                 HHTS-HHHHHHHCTT-H CS
       F-box  15 LerLplsdllalrrVSk 31 
                 L +L+ls  +al+++S+
  CCE29031.1 853 LTHLDLSFCCALSDTST 869
                 679*************8 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.1   7.9e+03       4      15 ..     631     643 ..     631     649 .. 0.72
   2 ?    4.7   0.0     0.017        43      21      38 ..     769     786 ..     759     792 .. 0.76
   3 !    9.3   0.0   0.00059       1.5       2      38 ..     799     840 ..     798     844 .. 0.82
   4 !   10.9   0.0   0.00019      0.48       1      32 [.     851     886 ..     851     896 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.1
                 -EEE--SS.---E CS
       LRR_4   4 evLdLsnN.qltd 15 
                 +++dL+n+ ++td
  CCE29031.1 631 RSIDLNNCfHVTD 643
                 5678998877887 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.017
                 H-TT--EEE-.-S----- CS
       LRR_4  21 klpnLkeLdLsgNnlitd 38 
                 ++p+L +LdLs +  itd
  CCE29031.1 769 GCPKLSKLDLSYCKHITD 786
                 799999999999877765 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00059
                 S--EEE--SS.---E-S-...HHH.-TT--EEE-.-S----- CS
       LRR_4   2 nLevLdLsnN.qltdipl...lek.lpnLkeLdLsgNnlitd 38 
                 +L++L+L  +  +tdi++    +  ++ L++L L ++++++d
  CCE29031.1 799 RLRSLSLTRCtSITDIGFqswAQYrFDRLTHLCLADCTYLSD 840
                 79******6549******8653344*******9999988876 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00019
                 SS--EEE--.SS---E-S-....HHH-TT--EEE-.- CS
       LRR_4   1 pnLevLdLs.nNqltdipl....leklpnLkeLdLsg 32 
                 ++L++LdLs  + l+d +     l +lp LkeL + +
  CCE29031.1 851 KKLTHLDLSfCCALSDTSTevvaL-GLPFLKELRMAF 886
                 69*******5569***99976544.5*******9955 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.3   3.4e+03       2       9 ..     281     288 ..     280     290 .. 0.81
   2 !   28.3   0.3   4.6e-10   1.2e-06       6      35 ..     565     594 ..     560     599 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.3
  F-box-like   2 srLPdEiL 9  
                 s+LP+E L
  CCE29031.1 281 SNLPPEML 288
                 79****98 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 4.6e-10
  F-box-like   6 dEiLlqIFsyLppsdLlrlalVCrrWrrva 35 
                 dE+L+qIF +L+ ++Llrl+lV+++Wr + 
  CCE29031.1 565 DELLVQIFKHLDIKELLRLRLVSSHWRHLL 594
                 8**************************987 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.22   5.6e+02       3      20 ..     631     646 ..     630     649 .. 0.72
   2 ?   -1.3   0.1       2.4   6.1e+03       1      11 [.     682     692 ..     682     701 .. 0.82
   3 ?    2.9   0.0     0.095   2.4e+02       1      19 [.     772     788 ..     772     792 .. 0.75
   4 ?    1.8   0.0      0.23   5.9e+02       1      13 [.     799     814 ..     799     820 .. 0.72
   5 ?   -1.5   0.0       2.6   6.7e+03       1      10 [.     826     835 ..     826     845 .. 0.80
   6 !    6.3   0.0    0.0077        20       1      11 [.     852     862 ..     852     876 .. 0.88
   7 ?   -3.5   0.0         7   1.8e+04       2      12 ..     879     889 ..     878     899 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.22
       LRR_1   3 rhLdLsnnpllglppnsf 20 
                 r++dL+n++  + +++ f
  CCE29031.1 631 RSIDLNNCF--HVTDEGF 646
                 799*****9..5555555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.4
       LRR_1   1 nLrhLdLsnnp 11 
                 +L+++d sn++
  CCE29031.1 682 QLEEIDWSNCR 692
                 599******97 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.095
       LRR_1   1 nLrhLdLsnnpllglppns 19 
                 +L +LdLs++   +++++s
  CCE29031.1 772 KLSKLDLSYCK--HITDRS 788
                 6899******9..566665 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.23
       LRR_1   1 nLrhLdLsnnpl...l 13 
                 +Lr+L L+++     +
  CCE29031.1 799 RLRSLSLTRCTSitdI 814
                 69********864444 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 2.6
       LRR_1   1 nLrhLdLsnn 10 
                 +L+hL L ++
  CCE29031.1 826 RLTHLCLADC 835
                 699**99888 PP

  == domain 6  score: 6.3 bits;  conditional E-value: 0.0077
       LRR_1   1 nLrhLdLsnnp 11 
                 +L+hLdLs ++
  CCE29031.1 852 KLTHLDLSFCC 862
                 7*********9 PP

  == domain 7  score: -3.5 bits;  conditional E-value: 7
       LRR_1   2 LrhLdLsnnpl 12 
                 L++L +  +  
  CCE29031.1 879 LKELRMAFCGS 889
                 89999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1051 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 7049.68
//
Query:       CCE29032.1  [L=349]
Description: uncharacterized protein CPUR_02723 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-34  117.1  10.2    1.4e-33  116.5  10.2    1.2  1  Bax1-I    Inhibitor of apoptosis-promoting Bax1


Domain annotation for each model (and alignments):
>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5  10.2   7.9e-38   1.4e-33       1     207 []     125     341 ..     125     341 .. 0.88

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 7.9e-38
      Bax1-I   1 raflrkvYgllalgllltalvaavvlsspaqlflslhivlflvvilaplalvflslsaarlkkkssala.lallllftlleGlslspillvytgaiilq 98 
                 r++l++++++++lg+++ +l+a  +++s+  ++++l++   +vv +++lal f+ ++ +r  + ++ +  +al+ +f + ++++++p+l+++ + ++++
  CCE29032.1 125 REYLNNTFLHTGLGIGIIGLTARQMVQSG--FVYRLMVTNPWVVGIGGLALSFATMIGTRSISPDNYIPkYALWTAFNATQAAFVAPLLAFVPAPLLAR 221
                 679*************************9..9999*9***************888887777776666555***************************** PP

      Bax1-I  99 aflltaaifgglslyalttkrdls.glggflfagligliiaslvnlFlp...ssalelais.....ylgvllfsglilyDtqkiierageygee..... 183
                 a l+t+a++g+ls++++t+k++ + ++gg l+ag   + +++l+ l++p        la++     y+g+ +f g++lyD+qk++ +a++ ++      
  CCE29032.1 222 AGLYTLAMMGALSVVGATAKQEKYlYIGGPLLAGAALVAVSGLAPLIVPataV--RTLAFTeniwlYGGLAVFGGFTLYDVQKVLYHARM-AQAgmmrr 317
                 *******************776666*********************9996442..23333455677******************965544.444699** PP

      Bax1-I 184 dailaalsLyldfinlFlslLril 207
                 d+++ ++sL ldf+n+F+++++il
  CCE29032.1 318 DPVNESISLELDFLNIFVRMVQIL 341
                 **********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2561.88
//
Query:       CCE29033.1  [L=209]
Description: probable MXR1-responsible for the reduction of methionine sulfoxide [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-58  197.8   0.1    1.3e-58  197.5   0.1    1.0  1  PMSR      Peptide methionine sulfoxide reductase


Domain annotation for each model (and alignments):
>> PMSR  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.5   0.1   7.1e-63   1.3e-58       2     152 ..      43     195 ..      42     196 .. 0.97

  Alignments for each domain:
  == domain 1  score: 197.5 bits;  conditional E-value: 7.1e-63
                 EEEE-S-HHHHHHHHCTST...TEEEEEEEEESSS-SS--HHHHHTTTT--EEEEEEEEETTTS-HHHHHHHHHHTS-TT-SSEETTEESGGG--EEEE CS
        PMSR   2 avlagGCFWgveklfeklk...GvlstevGYagGktenptYeevcsgktghaEavevvydpekvsleellelffeihDptqlnrqgnDvGtqYrsaiyy 97 
                 ++la+GCFWg+e++f+++    G+l+++vGY+gG++e+p+Y+ vc gktghaEa ++++dp++vs+++lle+f+++hDpt+ln qg D+G qYrsaiyy
  CCE29033.1  43 CTLAAGCFWGTEHIFRRHFadkGLLDARVGYIGGDVEDPSYRAVCGGKTGHAEAAQLIFDPHQVSYRTLLEFFYKMHDPTTLNAQGPDTGPQYRSAIYY 141
                 79***************98888***************************************************************************** PP

                 SSCCHHHHHHHHHHHHHTTHTTSSS---EEEEG-SEEE--CCCTTHHHH-TTS-- CS
        PMSR  98 tneeqkevaeevleelqkkkalkkkivteieplkefykaeeyHqqYleknpegyc 152
                 +++eq+++a+ev++ ++++ ++k+ ivte++p++++++aeeyHq+Yl kn++gy+
  CCE29033.1 142 HDSEQERTAREVTRLANEQ-WWKGCIVTELAPAGRWWTAEEYHQEYLGKNKGGYE 195
                 ************9999888.*********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1658.90
//
Query:       CCE29034.1  [L=193]
Description: uncharacterized protein CPUR_02725 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1571.74
//
Query:       CCE29035.1  [L=685]
Description: related to pathway-specific regulatory protein nit-4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-18   66.7   2.1    2.5e-18   66.1   2.1    1.3  1  Fungal_trans  Fungal specific transcription factor domain
      1e-09   38.3   7.7      1e-09   38.3   7.7    2.0  2  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   2.1   2.8e-22   2.5e-18       3     184 ..     186     360 ..     184     441 .. 0.82

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 2.8e-22
  Fungal_trans   3 rffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltses......qefiafplraeilihedfsspssslwi 93 
                   + + +++p+f+++ +p f+++         +y+s+ ll+a ++   + ++s+ +  +  l ++        +++    r + ++  ++s+  + + +
    CCE29035.1 186 VHWCWIQPLFNFIYRPVFTRDM----QAMGPYYSHTLLNALISHSIRWAQSDLSN-WRILDESYrggsvfGKHA----RTSLFQ--ELSDGICTIPT 271
                   5688999***************....9********************99999976.455554446765553434....888888..*********** PP

  Fungal_trans  94 lqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlp 184
                   +q+L++l+  e  ++++ +++ ++g+a+rl  +lg   +  +    s++ ++ee  e+rrR++w+++ +Dk+i+l+lGr p l  ++ + +
    CCE29035.1 272 IQALVFLSAQECSLGNTVQAWTYSGIAFRLIDHLGICVDGQRFP-GSVPLSDEE-LEIRRRIYWGCYLWDKLISLYLGRSPSLQLTDFSPS 360
                   ***********************************988877765.335555555.**************************7666665555 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   7.7   1.2e-13     1e-09       2      35 ..      13      45 ..      12      50 .. 0.92
   2 ?   -2.2   0.1      0.51   4.6e+03      18      25 ..     428     435 ..     424     438 .. 0.63

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 1.2e-13
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCT CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfyse 35
                +Cd+Cr++KvKC +++P C++C  +n eC  y+ 
  CCE29035.1 13 SCDPCRRRKVKCGGEQPICRRCFARNDECI-YKL 45
                9*****************************.765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.51
                 SS-HHHHH CS
     Zn_clus  18 PaCsnCkk 25 
                  aC  C++
  CCE29035.1 428 QACLDCQE 435
                 56777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 5394.81
//
Query:       CCE29036.1  [L=525]
Description: uncharacterized protein CPUR_02727 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.7e-151  503.1   0.1   6.6e-151  502.9   0.1    1.0  1  Glyco_hydro_125  Metal-independent alpha-mannosidase (GH125)
  ------ inclusion threshold ------
       0.15   12.4   0.0       0.25   11.6   0.0    1.3  1  Qn_am_d_aII      Quinohemoprotein amine dehydrogenase, alpha 


Domain annotation for each model (and alignments):
>> Glyco_hydro_125  Metal-independent alpha-mannosidase (GH125)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  502.9   0.1  7.4e-155  6.6e-151       1     416 []      95     505 ..      95     505 .. 0.98

  Alignments for each domain:
  == domain 1  score: 502.9 bits;  conditional E-value: 7.4e-155
                      SHHHHHHHHHHHHHHHHHTEEEETT...EEEE--BSS-SEEHHHHHHHHGGGGGGTTTSGGGHHHHHHHHHHHHHHHHH-TT-SEE-..SS... CS
  Glyco_hydro_125   1 dpdlarlfenafpntldttvkwkeka.eltfvitGDidamWlRDsanqlasYlpllkedeklaslirgvinlqaryilispYanaFqppeesgl 93 
                      dpdlarlfen+fp+tldttvk+ + a +l+f++tGDi+a+WlRD+ nq+a+  +ll +d++l+ l+++vin+++ryi + pY+ aFqpp+esgl
       CCE29036.1  95 DPDLARLFENTFPSTLDTTVKYFDPAaNLAFIVTGDITAQWLRDTGNQFAHLYKLLPQDDNLKALVKAVINTESRYISQYPYCGAFQPPPESGL 188
                      89********************998769****************************************************************** PP

                      SS---SS..--BS-TT.....EEE----HHHHHHHHHHHHHHHHHH---TT--HHHHHHHHHHHHHHHHGG.......GHHH.H-----B-SSS CS
  Glyco_hydro_125  94 kkteneaaqkdkvepeydeelvfeckyelDSlaaflqlsseyyeatgdleffeekwvkaveaildvleeqqegtydedgkkvlksaYtfqretn 187
                      k+t n+ a k +v+p++d+++vfeckyelDSla fl++s++yy++t+d++f++++w +a+++il+++eeq+++++++d + v  s Y+++++t 
       CCE29036.1 189 KPTVNDYALKVNVNPPVDNQTVFECKYELDSLAGFLKISRSYYQNTHDTSFINSNWEDAMSKILQTIEEQSQSSWSNDWDFV--SYYNWTGTTG 280
                      *****999889******************************************************************99666..********** PP

                      SGGGS-HHHHT-S----.SSS---SB-TTS-B-SSSEEHHHHHHHHHHHHHHHHHHHHTS--..HHHHHHHHHHHHHHHHHHHSEEEETTTEEE CS
  Glyco_hydro_125 188 ratetlsneglGnpvkentGlvrsaFRpSDDatifqflipaNmmlaveLeklaeileklaeke.lakearklakeiregiekhavvehkkfgki 280
                      +    ++n g+G+p ++ +Glv s +RpSDD ++f+f++  N+mlaveL+++a++l++ ++   ++k++r++a+ ir++i +h+ +++     i
       CCE29036.1 281 SLAPPVPNGGNGEPKQA-NGLVASSHRPSDDLCVFNFITSDNAMLAVELSHIADMLDAESKLGsVSKQIRQYADVIRKAILEHTKTSN----GI 369
                      *****************.5*************************************97776658******************987775....6* PP

                      E-SEE-SSS-EE----SSSS-STTHHHHTSS-TT-HHHHHHHHHHTSTTSTTEEE-SS-EEE--TTS-TTEEEHHHHHHHHHT---HHHHHHHH CS
  Glyco_hydro_125 281 yAyEvDGyGsallmDDanvPsLLslpllgyvkkddevYqnTrkfvlskanpYflkGkalsgiGgphvglgkaWpmalivqaltsdddeeiaell 374
                      +AyE++G+G++++mDDanvPsL+slp+lg++ ++d++Yq+T++ ++s+anpY++ Gka++giGgphv++++ Wpm+ +  ++ +dddeei++ l
       CCE29036.1 370 FAYETNGLGGQYIMDDANVPSLVSLPYLGFLPRNDSTYQKTKEAMFSRANPYYAVGKAFTGIGGPHVNTTYPWPMSQVSGIFGTDDDEEIRQRL 463
                      ********************************************************************************************** PP

                      HHHHHTSTTSSS--SEEETTEEEEES-S-BHHHHHHHHHHHH CS
  Glyco_hydro_125 375 klllkstaglglvhEsvnvdnekkftRswFawanslfgelil 416
                       ++++ t+glgl+hEsv+++n ++ftR+wFawans+f+e++l
       CCE29036.1 464 AMIMDHTSGLGLIHESVQMHNGSDFTRPWFAWANSYFAEMVL 505
                      ****************************************97 PP

>> Qn_am_d_aII  Quinohemoprotein amine dehydrogenase, alpha subunit domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.8e-05      0.25      41     103 ..     421     489 ..     406     491 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.8e-05
  Qn_am_d_aII  41 kyadGeelsgsGkalvYtgyewRgslkvg......gvelRqvlalspddksleGRmfeadedelGadla 103
                   ya G+ ++g G   v t y w  s  +g      ++e+Rq la+  d+ s  G  +e  + ++G+d++
   CCE29036.1 421 YYAVGKAFTGIGGPHVNTTYPWPMSQVSGifgtddDEEIRQRLAMIMDHTSGLGLIHESVQMHNGSDFT 489
                  59********************9998888899999******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3748.60
//
Query:       CCE29037.1  [L=267]
Description: uncharacterized protein CPUR_02728 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00022   21.4   0.0    0.00022   21.4   0.0    1.5  2  NPP1      Necrosis inducing protein (NPP1)
     0.0068   16.4   0.0      0.013   15.5   0.0    1.5  1  zf-CHCC   Zinc-finger domain


Domain annotation for each model (and alignments):
>> NPP1  Necrosis inducing protein (NPP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.5e-08   0.00022      54     125 ..     109     182 ..      56     204 .. 0.72
   2 ?   -4.4   1.0         2   1.8e+04      69      75 ..     224     230 ..     223     232 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.5e-08
        NPP1  54 aRsrcsnggwaimYayYfpkdqaak..ssghrHdWenvvVwidndakeeskvlgvsasahgkykkkt.kastvrl 125
                 + +rcs+  + + Y+ ++ kd  +     gh +dWe vvV  ++   +e ++ ++ +s+h++y++   ++ + ++
  CCE29037.1 109 SYKRCSETALRVAYNLFYTKDGFTPrgLFGHAFDWERVVVVWNKT-GSEWTPSQLFLSQHKGYQRVDwSQIESTF 182
                 4578878888999********98888899*******987655444.35558999999******997444434444 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 2
        NPP1  69 yYfpkdq 75 
                 +Yfpk +
  CCE29037.1 224 WYFPKRE 230
                 *****75 PP

>> zf-CHCC  Zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.5e-06     0.013       3      22 ..     191     209 ..     189     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-06
                 EEEEEESSTTSEEEEEEEE- CS
     zf-CHCC   3 rvaCdGgggalGHPrvyiel 22 
                 r  CdG  + l+HP+++i++
  CCE29037.1 191 RGGCDGQ-KNLDHPKIWIDV 209
                 567***8.9*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1929.96
//
Query:       CCE29038.1  [L=126]
Description: probable thioredoxin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-23   83.0   0.0    1.5e-23   82.8   0.0    1.1  1  Thioredoxin    Thioredoxin
    3.5e-06   27.3   0.0    2.5e-05   24.5   0.0    1.9  1  Thioredoxin_8  Thioredoxin-like
    3.7e-06   27.4   0.3    8.8e-06   26.1   0.3    1.6  1  Thioredoxin_2  Thioredoxin-like domain
    8.2e-06   25.4   0.0    8.6e-06   25.3   0.0    1.1  1  OST3_OST6      OST3 / OST6 family, transporter family
    3.8e-05   23.6   0.0    4.8e-05   23.3   0.0    1.1  1  AhpC-TSA       AhpC/TSA family
      0.002   18.3   0.0     0.0029   17.7   0.0    1.3  1  Thioredoxin_7  Thioredoxin-like
     0.0035   17.1   0.0     0.0043   16.8   0.0    1.1  1  DIM1           Mitosis protein DIM1
  ------ inclusion threshold ------
      0.017   14.8   0.1      0.032   13.9   0.1    1.4  1  Redoxin        Redoxin
      0.024   14.4   0.0      0.036   13.8   0.0    1.3  1  Thioredoxin_9  Thioredoxin
      0.081   12.7   0.1       0.15   11.9   0.1    1.5  1  TraF           F plasmid transfer operon protein


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   8.1e-27   1.5e-23      10      86 ..      14      91 ..       6     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 8.1e-27
                 HHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT..TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEE CS
  Thioredoxin 10 FeeevakekklvlveFyApwCghCkalaPeleklaeelkd..kvklakvdvdenedlakkyevegiPtlklfkngkevk 86
                  ++ +++  + v+v+F+A+wC++Cka+aP +e+la ++++   + +akv+vd+ + la+ y+++++Pt+++fk+gk+v+
   CCE29038.1 14 LQSLLSS-TTYVVVDFFADWCPPCKAIAPIFEQLAGKHTQpkYLAFAKVNVDKVDGLAATYQITAMPTFMFFKEGKQVA 91
                 4455555.99***************************999989*********************************654 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.4e-08   2.5e-05       2      45 ..      22      65 ..      21      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.4e-08
                   SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS CS
  Thioredoxin_8  2 kvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldk 45
                   ++v++ f+a+wcppcka+ p   +l  k+ ++k + +  v++dk
     CCE29038.1 22 TYVVVDFFADWCPPCKAIAPIFEQLAGKHTQPKYLAFAKVNVDK 65
                   59****************************99999999999997 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.3   4.9e-09   8.8e-06       6      91 ..      22      93 ..      18     106 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 4.9e-09
  Thioredoxin_2  6 kpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPt.ivfldgk....e 91
                    +v+v+f +++Cp Ck++   +++l            +++ +pk+ a+ + +  k           la +y+++++Pt ++f +gk    +
     CCE29038.1 22 TYVVVDFFADWCPPCKAIAPIFEQL-----------AGKHTQPKYLAFAKVNVDK--------VDGLAATYQITAMPTfMFFKEGKqvavN 93
                   79******************99999...........8999999999999988765........677************6668888843333 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   4.8e-09   8.6e-06      46     107 ..      33      89 ..      11     112 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 4.8e-09
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkg 107
                 C +C+ ++p fe++a  +++      k l Fakv++d+   + ++++++  P +++f+  k+
  CCE29038.1  33 CPPCKAIAPIFEQLAGKHTQP-----KYLAFAKVNVDKVDGLAATYQITAMPTFMFFKEGKQ 89 
                 ****************99999.....69*****************************98554 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.7e-08   4.8e-05      25      92 ..      21      88 ..       6      95 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.7e-08
                TSEEEEEEESTST-CCHHHHHHHHHHCH.HHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTS CS
    AhpC-TSA 25 gkpvvlffypkdwcpvCttelpalakly.eefkergvevigvsvdspeshkkfiekeslnfpllsDeeg 92
                  +vv+ f++  wcp+C++ +p +++l+ +  + + +    v+vd+++ ++++ +   ++  ++  e +
  CCE29038.1 21 TTYVVVDFFAD-WCPPCKAIAPIFEQLAgKHTQPKYLAFAKVNVDKVDGLAATYQITAMPTFMFFKEGK 88
                479*******9.****************44555778899999999999888777666666655555555 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.6e-06    0.0029       7      81 ..      11      84 ..       7      86 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.6e-06
                   HHHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HH.HT-EEEEESS--S-GGG.-TT-.--SSEEEEE CS
  Thioredoxin_7  7 dealakaaergkpvlvffgaswcftCqalerdflsdeevkaala.ekfvllrvdvterdanilelde.qgvPvvafl 81
                   +e l+ + ++   v v+f a+wc++C+a++  f++    k   + +  ++ +v+v+  d+   ++++ +  P+++f+
     CCE29038.1 11 PEELQSLLSSTTYVVVDFFADWCPPCKAIAPIFEQL-AGKH-TQpKYLAFAKVNVDKVDGLA-ATYQiTAMPTFMFF 84
                   5778888999999****************9999987.3444.55466677788888888844.33323447777776 PP

>> DIM1  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.4e-06    0.0043      20      89 ..      21      92 ..       6      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.4e-06
                SSEEEEEEE-TT-HHHHHHHHHHHHHHHHTT..TTEEEEEEETTT--TTSCCCTT-SSSEEEEEETTEEEEE CS
        DIM1 20 erlvviRFGrdedaeClklDelLakiaeklk..nfaviylvdidevpdfnkmyeledpvtilffyrnkhmkv 89
                +  vv+ F  d+ + C  +  + ++ a k    ++ +++ v++d+v  +   y+++   t +ff ++k++ v
  CCE29038.1 21 TTYVVVDFFADWCPPCKAIAPIFEQLAGKHTqpKYLAFAKVNVDKVDGLAATYQITAMPTFMFFKEGKQVAV 92
                45689999999999999999999999866542389999**************************99998876 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.8e-05     0.032      26      57 ..      18      49 ..       5      63 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
                HTTSE.EEEEEESTTT-HHHHHTHHHHHTHHHH CS
     Redoxin 26 fkgkk.vvvnfvpgafcPtCsaehpyleklael 57
                +   + vvv f++  +cP+C+a +p +e+la +
  CCE29038.1 18 LSSTTyVVVDFFAD-WCPPCKAIAPIFEQLAGK 49
                55556256666666.*******99999988766 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     2e-05     0.036      42     109 ..      22      89 ..       3      96 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
                    -EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT.-SS--SSEEEEE-TT-- CS
  Thioredoxin_9  42 klkilvltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqylt.ngaraiPtliildeege 109
                    ++ ++ + +dwC+ + ++ P+++++a    + +   +  + n + +d   +  +  a Pt+++++e+ +
     CCE29038.1  22 TYVVVDFFADWCPPCKAIAPIFEQLAGKHTQPKYLAF-AKVNVDKVDGLAAtYQITAMPTFMFFKEGKQ 89 
                    344555789*****************88844444333.3444444444443377788888888876655 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   8.4e-05      0.15     130     204 ..      22      89 ..      12     107 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.4e-05
        TraF 130 eygLlfFyrgkcpyceaqapilqafadky....glevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpksq 204
                  y  + F++  cp c+a api +++a k+     l+   V+vd+   +         g aa+++++ +P+++++++ +q
  CCE29038.1  22 TYVVVDFFADWCPPCKAIAPIFEQLAGKHtqpkYLAFAKVNVDKV--D---------GLAATYQITAMPTFMFFKEGKQ 89 
                 566777999*****************9983333366666777766..3.........35559**********9999944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 878.07
//
Query:       CCE29039.1  [L=960]
Description: related to ferric reductase Fre2p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-33  114.1   0.0    8.4e-33  113.5   0.0    1.3  1  adh_short      short chain dehydrogenase
    9.3e-30  103.9   0.0    1.9e-29  102.9   0.0    1.5  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    2.8e-25   88.9  15.9    2.8e-25   88.9  15.9    2.3  2  Ferric_reduct  Ferric reductase like transmembrane component
    8.1e-12   45.2   0.0    4.1e-07   30.1   0.0    2.4  2  FAD_binding_8  FAD-binding domain
    8.5e-10   38.8   0.3    2.8e-09   37.1   0.3    1.9  1  KR             KR domain
    2.8e-08   34.0   0.0    2.3e-05   24.5   0.0    2.4  1  NAD_binding_6  Ferric reductase NAD binding domain
  ------ inclusion threshold ------
      0.036   13.5   0.0      0.079   12.4   0.0    1.5  1  Epimerase      NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0   3.3e-36   8.4e-33       2     190 ..       7     206 ..       6     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 3.3e-36
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH....SSESEEEE---S.....S--S CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl....gkldvLvnNAGi.....tgsg 91 
                 + l+ G++sG+G+a+a+e++ +G +v+++d +++  +++++e +++   a ++++Dv+d e++ ++v++ ++      +++  ++  AG+       ++
  CCE29039.1   7 TFLISGGASGLGKACAREILHNGGNVAILDMNDD-GHQTVEEAGSA---ARFFACDVRDTESIARAVRETAEWAaqvnKPIGGVIPAAGVslpatILDR 101
                 5699**************************9955.77888888875...*************99999877554445569999********888765566 PP

                 SGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH......HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSS CS
   adh_short  92 pfselseeewervievNltgvflltravlpaml......kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdT 184
                 + s  + ++++ v+ +Nl gv+ l+r+ + +m       ++++G I+ v+S a++ + +g+++Y+AsK+ava++t  +a++la+ gir++++aP l++T
  CCE29039.1 102 DGSPCNLDDVDFVLGINLRGVLDLVRLGAAEMAkapggpDGERGVIIMVASSAAFDGQKGQVSYAASKGAVAAMTLPMARDLARFGIRCVTIAPSLFET 200
                 667788999************************9999999*********************************************************** PP

                 HHHHHH CS
   adh_short 185 dmakel 190
                  m+   
  CCE29039.1 201 RMTSMM 206
                 **9765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   7.4e-33   1.9e-29       1     208 [.      12     231 ..      12     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 7.4e-33
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHH....SSEEEEEE-----EG...CSS-GGGH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekf....gklDilvnnagiapk...lkgpflet 90 
                   G asg+G+a+A+++  +G +v++ d+n++++++vee+ +   a++++cDV+d+e+++++v+e++e      + + +++ +ag++ +   l+ +   +
    CCE29039.1  12 GGASGLGKACAREILHNGGNVAILDMNDDGHQTVEEAGS--AARFFACDVRDTESIARAVRETAEWAaqvnKPIGGVIPAAGVSLPatiLDRDGSPC 106
                   669***************************777776665..4669*****************9998755567788*********999999999999* PP

                   -HHHHHHHHHHHTHHHHHHHHHHHHHCTSC........CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGG CS
  adh_short_C2  91 sreefdraldvnlyslfllakaalplmkeg........gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaa 179
                   + +++d +l +nl++++ l++  +  m++         g i+ ++s +a  + +++  y+a+K+a+ a+t  +A++l++ giR+ +++p++ +T+++
    CCE29039.1 107 NLDDVDFVLGINLRGVLDLVRLGAAEMAKApggpdgerGVIIMVASSAAFDGQKGQVSYAASKGAVAAMTLPMARDLARFGIRCVTIAPSLFETRMT 203
                   *********************9999555544688989999********************************************************* PP

                   GGSTTHHHHHHHHHHHSTTSS.-B-HHHHH CS
  adh_short_C2 180 sgikgfdelleelearaplgr.lgtpeeva 208
                   s ++  +++++ lea + + r  g+pee  
    CCE29039.1 204 SMMS--PKVRKSLEATYEFPRrPGQPEEFS 231
                   **98..999999999988766488999876 PP

>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.6      0.16     4e+02      72     116 ..     373     423 ..     348     425 .. 0.64
   2 !   88.9  15.9   1.1e-28   2.8e-25       1     123 [.     500     618 ..     500     620 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.16
  Ferric_reduct  72 dsllkkpynllGvlalllliilaitS......lkfirrrlsyelFyylHhl 116
                    +s +++  +++G  ++++ ++++++       l ++r  ++y+l++ +H++
     CCE29039.1 373 YSYVTRQHFRYGSAMVIFWVLVVAVGavnrvgLAVLRTLHGYRLYKRTHRF 423
                    344444444566666666666666665556666666666669999999986 PP

  == domain 2  score: 88.9 bits;  conditional E-value: 1.1e-28
  Ferric_reduct   1 lGiaalillplalllalRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilait 96 
                    +Gi++++++pl++l+++Rnn   +ltg+ + ++++fH+w++++a l a++H ++y++ ++++    ++++++  ++++y+ +G +a++++++l+++
     CCE29039.1 500 TGIISFANFPLIWLFGMRNNAAIWLTGWDFGTYNNFHRWIARIATLQAVVHSVGYTVIAFHEG---GWAYFAGYWTHMYWVVGEVATVVMCALVAS 592
                    69***********************************************************98...7***************************** PP

  Ferric_reduct  97 SlkfirrrlsyelFyylHhllyvayll 123
                    S+ ++r r +yelF++lH+++ v++l 
     CCE29039.1 593 SIYWLR-RKNYELFLILHVVMSVVVLA 618
                    ******.***************99986 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.6e-10   4.1e-07      10      58 ..     669     716 ..     659     725 .. 0.83
   2 !   12.6   0.0   4.3e-05      0.11      61     107 ..     757     798 ..     748     800 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.6e-10
  FAD_binding_8  10 alleedliklkvskpkkslkykaGqyvyini.pslsklfwqsHPFtiasa 58 
                    +    ++++l+++     +++++G y y++i  ++   fw+sHPFt+as+
     CCE29039.1 669 YSPAANMVRLEIPCRVDAYPAQPGTYYYLSIlDDTR--FWESHPFTVASV 716
                    33348********99999*************88888..8*********96 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.3e-05
  FAD_binding_8  61 ddklslvikvksgltkklakkllssskkelenkkaklkvlidGPYGa 107
                     + l+ +i+   g+t++l+    s+     +   a ++vl+dGPYG 
     CCE29039.1 757 GKILTFLIRPYDGFTSRLRDLAASA-----SPRPAPIRVLVDGPYGH 798
                    6678999*************99998.....468999**********7 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.3   1.1e-12   2.8e-09       2     157 ..       7     173 ..       6     193 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.1e-12
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS....S---EEEE--------- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee....ppikGvihaAgvlrdkl 96 
                 t+li GG+ gLG++ ar ++++g +  +l   +    +d     +++e+ g   +++a+Dv d ++++++++e  + +    +pi Gvi aAgv+  ++
  CCE29039.1   7 TFLISGGASGLGKACAREILHNGGNVAIL-DMN----DD---GHQTVEEAGSAARFFACDVRDTESIARAVRETAEWAaqvnKPIGGVIPAAGVSLPAT 97 
                 78********************9765544.333....22...34578899*******************99887654334579***********98777 PP

                 TTT.....--HHHHHHHHTTTTHHHHHHHHHTTT..........S--SEEEEEEEHHHHH--TT-HHHHHHHHHHH CS
          KR  97 lee.....mtaedleqvlapKvkGawnLhelled..........esldffvlfSSiagllgsagqanYaaaNaflD 157
                 + +     ++ +d++ vl   ++G+  L +l +            +  ++++++S a++ g++gq++Yaa    + 
  CCE29039.1  98 ILDrdgspCNLDDVDFVLGINLRGVLDLVRLGAAemakapggpdGERGVIIMVASSAAFDGQKGQVSYAASKGAVA 173
                 765333337899****************998766556667777678889********************9876655 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   9.1e-09   2.3e-05       1     155 [.     805     940 ..     805     941 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 9.1e-09
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkkskkealktkkikliwvvresssl.ewf.kdvLneleeeksegnieihiYlTseyeaedasdqlissiege 94 
                    ++ v+++ gG+G+  +is l+ l  +s+ e+ + ++++l w+v e     e++ +d+L+ l+  +    ++i++Y++ e+  ++            
     CCE29039.1 805 FNRVVFIVGGSGVVLPISYLQGLAGQSR-ETNNMTSMQLHWAVPEPALAaEVVaRDMLDALALADDG-TLSINVYFSAETLPSSDGV--RLP---- 892
                    5789***********************8.***************99865255515666877777776.********98776544322..222.... PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  95 nseslkqgvdavsgtrnvkihfgRPnlkevlkdi..askhknssvgvfvCGppklvkevkklv 155
                                    ++ +h++RP  + +++++    +++++s++v+ CGp+ l+++ +k+v
     CCE29039.1 893 -------P--------QIARHYQRPSARHIVTQAaeDCAAGRESLAVVACGPARLADDARKAV 940
                    .......2........2679************9965567899*****************9987 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.1e-05     0.079       2      63 ..       9      72 ..       8      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.1e-05
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl..elveldltdrsalerlfkee 63
                l+ G++  +G+a ++++l +g +v  ld + ++++t +++    ++  +d++d ++++r+++e+
  CCE29039.1  9 LISGGASGLGKACAREILHNGGNVAILDMNDDGHQTVEEAGSaaRFFACDVRDTESIARAVRET 72
                899***************************99999999888899***************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (960 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 6953.39
//
Query:       CCE29040.1  [L=348]
Description: related to GTP-binding protein rab4b [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.8e-43  146.5   0.0    7.9e-43  145.9   0.0    1.3  1  Ras          Ras family
      7e-30  103.7   0.0    1.4e-29  102.7   0.0    1.5  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    6.4e-11   42.0   0.0    1.8e-09   37.3   0.0    2.1  2  Arf          ADP-ribosylation factor family
    2.9e-05   23.8   0.0       0.13   12.1   0.0    2.2  2  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
    0.00035   20.6   0.0    0.00057   19.9   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0021   17.7   0.0     0.0096   15.5   0.0    2.1  1  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0028   17.0   0.0      0.004   16.6   0.0    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
  ------ inclusion threshold ------
       0.02   14.8   0.0       0.13   12.2   0.0    2.2  3  RsgA_GTPase  RsgA GTPase
      0.024   14.1   0.0      0.035   13.5   0.0    1.2  1  SRPRB        Signal recognition particle receptor beta subuni
      0.025   14.7   0.0      0.047   13.9   0.0    1.5  1  AAA_33       AAA domain
      0.026   15.1   0.0       0.19   12.3   0.0    2.0  2  ABC_tran     ABC transporter
      0.031   14.6   0.0      0.099   13.0   0.0    1.8  2  AAA_16       AAA ATPase domain
       0.08   13.2   0.0       0.13   12.5   0.0    1.3  1  AAA_28       AAA domain
      0.094   13.0   0.0       0.21   11.9   0.0    1.6  1  AAA_22       AAA domain
       0.11   12.0   0.0       0.18   11.3   0.0    1.3  1  AAA_7        P-loop containing dynein motor region
       0.13   12.3   0.2       0.63   10.0   0.0    2.0  2  AAA_5        AAA domain (dynein-related subfamily)
       0.16   11.9   0.0       0.39   10.6   0.0    1.6  2  NACHT        NACHT domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.0   7.5e-46   7.9e-43       1     161 [.      32     263 ..      32     264 .. 0.98

  Alignments for each domain:
  == domain 1  score: 145.9 bits;  conditional E-value: 7.5e-46
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET....TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd....gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwve 95 
                 K++l+G s++GK++ll+rf+k++++  + +Tigv+f +k i+v      k++kl++wDTAG e+f+s+ ++yyr+a g++lvydits++sf+ ++ +++
  CCE29040.1  32 KIILLGPSGTGKSCLLHRFIKNEWRVLSSQTIGVEFASKIIKVGtgarRKRIKLQLWDTAGTERFRSVSRSYYRGAAGAILVYDITSHASFRGIQPFLN 130
                 89****************************************9988889************************************************** PP

                 HHHHHSTTTSEEEEEEETTTGGG..................................................................G-SS-HHHHH CS
         Ras  96 eikrvaeenvpivLvGnKvDlee..................................................................kravsteege 128
                 + +  a+ n++++LvGnK Dl++                                                                   r++st+e+ 
  CCE29040.1 131 DARALASPNLSLMLVGNKLDLASdslldvnlppttpssvgststitaafgdshslstmgtytvgsysswdrgggsigpgmqqratialeGREISTSEVT 229
                 *************************************************************************************************** PP

                 HHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 129 elakelg.lkfletSAktnenveeafeellreil 161
                 ++a++ g    +e+SA + e+v+e+f++l+r il
  CCE29040.1 230 RWASSAGiSVVTEVSALNGEGVDEIFNRLARMIL 263
                 *******55678******************9886 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   1.4e-32   1.4e-29       1     120 []      32     151 ..      32     151 .. 0.88

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 1.4e-32
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K++l+G sg+GK++ll+rf++++ +  +++tigv+f++k + k+    +  + k++kl++WDtaG erfrs+ ++y+r+aa ailvyd     s++ ++
  CCE29040.1  32 KIILLGPSGTGKSCLLHRFIKNEWRVLSSQTIGVEFASKII-KV---GTGARRKRIKLQLWDTAGTERFRSVSRSYYRGAAGAILVYDitsHASFRGIQ 126
                 9************************************9965.44...44567789*********************************54333457799 PP

                 HHHHHHHHHCS.SS-EEEEEE-TTT CS
         Roc  97 eWlkelkkvag.kspvilvgnkiDl 120
                 + l++ ++ a+ +  ++lvgnk+Dl
  CCE29040.1 127 PFLNDARALASpNLSLMLVGNKLDL 151
                 ********988355899******95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   1.7e-12   1.8e-09      15     129 ..      31     153 ..      21     159 .. 0.83
   2 ?    2.6   0.0     0.079        83     152     174 ..     239     261 ..     212     262 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.7e-12
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE......TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHH CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei......knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeL 104
                 ++i+llG  ++GK+ +l+++ ++e     + Tig  f ++ +++      k +k+++wD  G e+ R++ ++Y++   + i v D + +  ++  +  L
  CCE29040.1  31 AKIILLGPSGTGKSCLLHRFIKNEWRVlSSQTIGveFASKIIKVgtgarrKRIKLQLWDTAGTERFRSVSRSYYRGAAGAILVYDITSHASFRGIQPFL 129
                 79******************9999876466787733566667778899999*************************************99999888777 PP

                 HHHCTSGCCTTSEEEEEEE-TTSTT CS
         Arf 105 kalleeeelkevallvlaNKqDlpe 129
                 +   +     +  l++++NK Dl++
  CCE29040.1 130 NDA-RALASPNLSLMLVGNKLDLAS 153
                 764.33334478899999**99976 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.079
                 EEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 152 eiqkcsavkgeglkeglewlses 174
                  ++++sa++geg++e +++l+++
  CCE29040.1 239 VVTEVSALNGEGVDEIFNRLARM 261
                 57899***************986 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00067       0.7       3      41 ..      32      72 ..      30      82 .. 0.78
   2 !   12.1   0.0   0.00012      0.13     107     141 ..     224     258 ..     214     260 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00067
   PduV-EutP  3 killiGkvgsGKttLtqalkgeelkYkktqa..iefsdevi 41
                ki+l+G++g+GK  L +++ ++e +  + q+  +ef +++i
  CCE29040.1 32 KIILLGPSGTGKSCLLHRFIKNEWRVLSSQTigVEFASKII 72
                9**************99988877766666651157777766 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00012
   PduV-EutP 107 nieaveelLksaGaekifevsavekegieellkyl 141
                 + + v ++ +saG++ + evsa++ eg++e+++ l
  CCE29040.1 224 STSEVTRWASSAGISVVTEVSALNGEGVDEIFNRL 258
                 5567899*************************988 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   5.4e-07   0.00057       1      87 [.      32     118 ..      32     148 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5.4e-07
                 EEEEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSEEEEEEE....ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge..kaivsdkpgtTrdinegrvk....lkgkeielvDtpGliegaseekglgkaflaleeadlillvvdase 87 
                 +++++G + +GKS L+ + +++  ++  s++ g+    + ++v      k+ +++l+Dt+G  e   + +++++++ +   a  ++lv d+++
  CCE29040.1  32 KIILLGPSGTGKSCLLHRFIKNewRVLSSQTIGVEFASKIIKVGtgarRKRIKLQLWDTAG-TE---RFRSVSRSYYR--GAAGAILVYDITS 118
                 5899****************986756556666554444444444343344489********.76...33367777764..4778888888772 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.1e-06    0.0096      64     190 ..      68     260 ..      30     264 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.1e-06
                 E.........TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT.....TBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHH CS
    GTP_EFTU  64 e.........ketkkylinliDtPGHvdFskevirglrvlDgavlvvdav.....eGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkq 148
                           ++ k+ +++l Dt G + F +     +r + ga+lv d++     +G++p  +   r + + ++ ++++ NK+D + ++l  +     +
  CCE29040.1  68 AskiikvgtgARRKRIKLQLWDTAGTERFRSVSRSYYRGAAGAILVYDITshasfRGIQPFLNDA-RALASPNLSLMLVGNKLDLASDSLLDVNLPPTT 165
                 23334444545789999************9877777*************9666666677766554.444446777***********5444433222221 PP

                 HHHHH.......................................................HHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 149 klsrk.......................................................eeklekygekgekevpvvfgSalkgegvktllealve 190
                    ++                                                       +++++  + ++  +  v  +Sal+gegv+++++ l +
  CCE29040.1 166 PS-SVgststitaafgdshslstmgtytvgsysswdrgggsigpgmqqratialegreisTSEVTRWASSA-GISVVTEVSALNGEGVDEIFNRLAR 260
                 11.11223455677777788888888888888888888888888877777666666665433333333333.5777888999999999988877765 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.8e-06     0.004       1     122 [.      32     150 ..      32     158 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.8e-06
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdn...ylardtlrlgatidveks.evrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedl 95 
                 k++L+G+sg GK+++     +n   +l  +t+ ++ ++++ k  +    + ++l+lwD  G+e+f   +      + +r  +  i V D++s+   + +
  CCE29040.1  32 KIILLGPSGTGKSCLLHRFIKNewrVLSSQTIGVEFASKIIKVgTGARRKRIKLQLWDTAGTERFRSVS-----RSYYRGAAGAILVYDITSHASFRGI 125
                 89************9877776644467888888888887655414456789************997764.....3344444455556677766555555 PP

   Gtr1_RagA  96 etlkeilealrqyspeakvfvlihKmD 122
                 + + +  +al   sp++++    +K+D
  CCE29040.1 126 QPFLNDARALA--SPNLSLMLVGNKLD 150
                 55555555443..55555555555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00012      0.13     101     122 ..      32      53 ..      12      99 .. 0.79
   2 ?   -0.7   0.0       1.1   1.2e+03      43      62 ..     136     155 ..      93     161 .. 0.76
   3 ?   -2.7   0.0       4.4   4.7e+03      75      99 ..     235     260 ..     221     264 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
                  EEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpe 122
                   ++l+G+SG GKS L+ +++ +
   CCE29040.1  32 KIILLGPSGTGKSCLLHRFIKN 53 
                  479*************998876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.1
                  HHTT-EEEEEEE-GGG--HH CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleee 62 
                   + ++++++v nK+Dl++++
   CCE29040.1 136 ASPNLSLMLVGNKLDLASDS 155
                  45678999999****99875 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.4
                  TTSEEE.E--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  75 lgyevl.lvsaktkegleelkellkd 99 
                  +g++v+  vsa ++eg++e+ ++l+ 
   CCE29040.1 235 AGISVVtEVSALNGEGVDEIFNRLAR 260
                  55554427888999999999888875 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.3e-05     0.035       5      65 ..      32      99 ..      28     126 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.3e-05
                EEEEE-STTSSHHHHHHHHHHSS--.-B---SS-EEETTG.........GGTT-SEEEETT-GCCSHH CS
       SRPRB  5 avllvGlsdsGKTslftrLttdsvk.ktvtSqessaalkv......ksekgskltliDfPGheklrqk 65
                +++l+G+s +GK  l++r  +++ +  +   +  ++a k+        +k  kl+l D  G e++r+ 
  CCE29040.1 32 KIILLGPSGTGKSCLLHRFIKNEWRvLSSQTIGVEFASKIikvgtgARRKRIKLQLWDTAGTERFRSV 99
                79*****************9995441233334556666665667666678889999*********974 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.5e-05     0.047       2      33 ..      33      68 ..      33     147 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.5e-05
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllssdt.....l 33
                ++l G++G+GKs l++r + k+ + +lss t     +
  CCE29040.1 33 IILLGPSGTGKSCLLHRFI-KNEWRVLSSQTigvefA 68
                6899**************9.88899999988666652 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00018      0.19      13      35 ..      32      54 ..      28      88 .. 0.85
   2 ?    0.2   0.0      0.96     1e+03      38      71 ..     212     247 ..     192     292 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00018
                EEEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagll 35
                k+ ++G++G+GKS Ll  +++++
  CCE29040.1 32 KIILLGPSGTGKSCLLHRFIKNE 54
                688*************9888776 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.96
                 SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S- CS
                 xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  38 teGeilldgkdlke..qeleslrkeigvlpqepqlf 71 
                 +  +i l+g+++++   ++  +++ i+v+++ + l+
  CCE29040.1 212 QRATIALEGREISTseVTRWASSAGISVVTEVSALN 247
                 445667777777764445555566666666665555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.4e-05     0.099      27      63 ..      33      65 ..      18     163 .. 0.62
   2 ?   -1.4   0.0       2.5   2.6e+03      80     127 ..     214     262 ..     166     268 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.4e-05
      AAA_16 27 vllsGesGvGKsslvrellralekdggiflrgkcdql 63
                ++l G+sG+GKs l+ ++ +    +++ +l+ ++   
  CCE29040.1 33 IILLGPSGTGKSCLLHRFIK----NEWRVLSSQTIGV 65
                689************87774....4577766665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.5
      AAA_16  80 ellrqlldeaesaeleawrekleeala.avpelagaeasrllellkrll 127
                   ++ +++e +++e+ +w+     ++  +v++l g++   +++ l+r++
  CCE29040.1 214 ATIALEGREISTSEVTRWASSAGISVVtEVSALNGEGVDEIFNRLARMI 262
                 5556666666666777776643322225788888888877777777776 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00012      0.13       1      44 [.      32      81 ..      32     116 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
      AAA_28  1 kivitGgestGKTtlleaLaar.....gypvv.pEaareileeklakged 44
                ki+++G+++tGK+ ll ++ ++       +++  E+a +i++ ++  +++
  CCE29040.1 32 KIILLGPSGTGKSCLLHRFIKNewrvlSSQTIgVEFASKIIKVGTGARRK 81
                79****************99883444444466778888888888755444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0002      0.21       8      29 ..      33      54 ..      31     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                +++ G+sGtGK+ ll r+ ++ 
  CCE29040.1 33 IILLGPSGTGKSCLLHRFIKNE 54
                6899*************99875 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017      0.18      34      56 ..      31      53 ..      15      73 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
       AAA_7 34 kpvllvGptGtGKtviikdllkk 56
                 +++l Gp+GtGK++++++++k+
  CCE29040.1 31 AKIILLGPSGTGKSCLLHRFIKN 53
                6799**************97665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00059      0.63       2      19 ..      33      50 ..      32      54 .. 0.89
   2 ?   -0.7   0.0       1.2   1.3e+03      47      86 ..     216     255 ..     210     275 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00059
                EEEE--SSSSHHHHHHHG CS
       AAA_5  2 vlLvGppGtgKselaerl 19
                ++L+Gp+GtgKs l  r+
  CCE29040.1 33 IILLGPSGTGKSCLLHRF 50
                79**********999886 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.2
                 -.........--------G-SEEEEESGGG--HHHHHHHH CS
       AAA_5  47 ikngttslvdsplvraaregeilvlDEveraesevlnsLl 86 
                 i+ ++++ + s+++r a ++ i v+ Ev  ++ e +++  
  CCE29040.1 216 IALEGREISTSEVTRWASSAGISVVTEVSALNGEGVDEIF 255
                 5556778889999999999999999999988855554444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00037      0.39       3      22 ..      33      52 ..      31      63 .. 0.87
   2 ?   -3.2   0.0       6.5   6.8e+03     142     161 ..     238     257 ..     223     259 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00037
                EEEEC-TTTCHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklal 22
                +il G++G GK+ Ll++++ 
  CCE29040.1 33 IILLGPSGTGKSCLLHRFIK 52
                79***************986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.5
                 E..EEEE--TCCHHHHHHHH CS
       NACHT 142 aivlevegfsesrrkqlvrk 161
                 + v+ev +++ + +++++++
  CCE29040.1 238 SVVTEVSALNGEGVDEIFNR 257
                 47899999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2614.82
//
Query:       CCE29041.1  [L=813]
Description: related to transcription factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-15   55.6   0.3    6.8e-09   36.1   0.1    4.0  3  Ank_4        Ankyrin repeats (many copies)
      6e-10   39.6   0.0     0.0012   19.4   0.0    3.4  2  Ank_2        Ankyrin repeats (3 copies)
    1.2e-09   37.5   0.1      0.036   14.6   0.0    5.0  5  Ank_3        Ankyrin repeat
    5.2e-08   33.0   3.1       0.18   12.3   0.0    4.5  4  Ank          Ankyrin repeat
    0.00011   22.1   0.6    0.00066   19.5   0.3    2.3  2  KilA-N       KilA-N domain
    0.00012   22.3   0.2      0.016   15.5   0.1    3.2  3  Ank_5        Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.046   14.3   2.1        1.2    9.7   3.1    2.4  2  Hrs_helical  Hepatocyte growth factor-regulated tyrosine kina
       0.19   11.9   1.5       0.41   10.8   1.5    1.5  1  Med2         Mediator complex subunit 2
       0.25   11.8   0.8       0.56   10.7   0.8    1.6  1  ParB         ParB family
        2.8    8.3   6.8        2.9    8.2   5.4    1.7  2  Muted        Organelle biogenesis, Muted-like protein


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.1   3.8e-12   6.8e-09       2      44 ..     382     423 ..     381     440 .. 0.88
   2 !   13.5   0.0   4.6e-05     0.083      27      52 ..     520     544 ..     451     547 .. 0.74
   3 ?    1.4   0.0      0.28   5.1e+02      20      46 ..     546     571 ..     545     574 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 3.8e-12
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAak 44 
                 +taLh+aa  +r++l+r L++ ga+++++ n+sGetal +A++
  CCE29041.1 382 HTALHWAATLSRMPLLRALIAAGASPHRV-NASGETALMRACL 423
                 599**************************.***********93 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4.6e-05
       Ank_4  27 inaqdnrsGetalhiAakrgnveilk 52 
                 +naq ++sG+tal i+a++gn +i+ 
  CCE29041.1 520 VNAQ-DSSGDTALNIGARIGNRSIIS 544
                 9***.****************98875 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.28
       Ank_4  20 LlekgadinaqdnrsGetalhiAakrg 46 
                 Lle gad+n   nr G+ +l++++ ++
  CCE29041.1 546 LLEVGADPNIA-NRVGLRPLDFGIGGE 571
                 67779*****7.**********98665 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   6.5e-07    0.0012       6      62 ..     361     423 ..     356     431 .. 0.75
   2 !   19.4   0.0   6.8e-07    0.0012       1      63 [.     385     462 ..     385     557 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6.5e-07
       Ank_2   6 kngnlelvklLl.egadpn.k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAar 62 
                 k++   +++ +  ++ d+  + + +taLh+Aa      ++++L+++      ++ +g+t+L+ A+ 
  CCE29041.1 361 KHD---MLRSFTpAELDMPiDpQSHTALHWAATLSRMPLLRALIAAgasphrVNASGETALMRACL 423
                 455...6667765444544535789********997788*****955556699999********95 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 6.8e-07
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnlei....vklLleh.......adndgrtpL.hyAars 63 
                 Lh+Aa     +l++ L+ +ga p+  +  g+taL+ A+  +n  +       Lle         d++grt+L h+A+ s
  CCE29041.1 385 LHWAATLSRMPLLRALIaAGASPHrvNaSGETALMRACLVTN-SMdqgsFPELLEVlggtiesRDQKGRTVLhHIAVTS 462
                 89999964356*****9999999876479******9999653.233345799998445566667799*****8888866 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00035      0.63       4      30 ..     383     408 ..     381     409 .. 0.92
   2 ?    4.6   0.0     0.037        67       2      14 ..     414     426 ..     413     440 .. 0.88
   3 ?    0.5   0.0      0.79   1.4e+03       2      10 ..     451     460 ..     450     465 .. 0.75
   4 ?   -2.0   0.0       5.1   9.2e+03       3      15 ..     476     488 ..     474     489 .. 0.83
   5 !   14.6   0.0     2e-05     0.036       2      31 .]     527     555 ..     526     555 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadvn 30 
                 t+Lh+Aa   + +++++L+   ga ++
  CCE29041.1 383 TALHWAATLSRMPLLRALIA-AGASPH 408
                 9*******************.899875 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.037
       Ank_3   2 GetpLhlAarsgn 14 
                 Get+L++A++ +n
  CCE29041.1 414 GETALMRACLVTN 426
                 9********9776 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.79
       Ank_3   2 GetpLh.lAa 10 
                 G+t Lh +A+
  CCE29041.1 451 GRTVLHhIAV 460
                 9*****5554 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 5.1
       Ank_3   3 etpLhlAarsgnl 15 
                 e++L +++r+g++
  CCE29041.1 476 ESLLEWVVRQGSV 488
                 89999****9986 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 2e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 G t+L + ar gn +i+  Lle  gad+n+
  CCE29041.1 527 GDTALNIGARIGNRSIISQLLE-VGADPNI 555
                 89********************.8****97 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.6   0.00031      0.55       3      31 ..     382     411 ..     382     412 .. 0.84
   2 ?    4.8   0.0     0.024        44       2      11 ..     414     425 ..     413     446 .. 0.75
   3 ?    1.6   0.0      0.25   4.4e+02       2      11 ..     451     461 ..     450     480 .. 0.80
   4 !   12.3   0.0    0.0001      0.18       2      31 ..     527     557 ..     526     558 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00031
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +T+LH+Aat      +++L+  GA+++ ++
  CCE29041.1 382 HTALHWAATLSRMPLLRALIaAGASPHRVN 411
                 5*******666666******88***98776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.024
                 SBBHHHHHH..H CS
         Ank   2 GnTPLHlAa..t 11 
                 G T+L++A+  t
  CCE29041.1 414 GETALMRAClvT 425
                 99******9773 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.25
                 SBBHHH.HHHH CS
         Ank   2 GnTPLH.lAat 11 
                 G+T+LH +A+t
  CCE29041.1 451 GRTVLHhIAVT 461
                 99****77764 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 0.0001
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+T+L + a++g+ +ii+ LL  GA++n+ +
  CCE29041.1 527 GDTALNIGARIGNRSIISQLLeVGADPNIAN 557
                 99*******************55*****976 PP

>> KilA-N  KilA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.3   3.7e-07   0.00066       8      91 ..      57     120 ..      51     135 .. 0.73
   2 ?   -3.0   0.0       3.5   6.3e+03      43      82 ..     153     182 ..     150     185 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.7e-07
      KilA-N   8 iiirrvkdgyinatkllkaa.aedtkriddWlrnkstkelleeleedynisekkksektisenrkakpgrlqGtYvhpdlalava 91 
                  ++rr++d + nat++lk a  ++ kr +++l+++  +  +e+++                      +g++qGt++  +  ++v+
  CCE29041.1  57 AVMRRRQDSWLNATQILKVAgVDKGKR-TKILEKEIQTGEHEKVQGG--------------------YGKYQGTWIKFERGVEVC 120
                 4689989*************4334444.6666666666666666655....................566888888888877776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.5
      KilA-N  43 tkelleeleedynisekkksektisenrkakpgrlqGtYv 82 
                 tke   ++++++  s              ++p+++ Gt++
  CCE29041.1 153 TKEQAMAAQRKRLYS----------SSMDGRPNGMTGTFF 182
                 667777777776665..........345689999999986 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   9.1e-06     0.016       8      53 ..     378     418 ..     371     421 .. 0.87
   2 ?   -1.9   0.0       2.5   4.5e+03      12      22 ..     447     457 ..     444     459 .. 0.84
   3 ?    3.2   0.0     0.065   1.2e+02       4      54 ..     514     565 ..     512     566 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.1e-06
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 d++       t+Lh+Aa   + +++r L+a ga++   +++G+tal
  CCE29041.1 378 DPQSH-----TALHWAATLSRMPLLRALIAAGASPHRVNASGETAL 418
                 44333.....***********************************8 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.5
       Ank_5  12 ldgggntpLhv 22 
                 +d++g t+Lh+
  CCE29041.1 447 RDQKGRTVLHH 457
                 689999****6 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.065
       Ank_5   4 hg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 ++ ++ vn++d  g t+L++ a+ g+ +++  Ll+ gad+n+ +  Gl +ld
  CCE29041.1 514 RFmSEIVNAQDSSGDTALNIGARIGNRSIISQLLEVGADPNIANRVGLRPLD 565
                 6667778888888889999888877777777777778888887777766666 PP

>> Hrs_helical  Hepatocyte growth factor-regulated tyrosine kinase substrate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.58     1e+03       8      35 ..     435     462 ..     431     466 .. 0.85
   2 ?    9.7   3.1   0.00068       1.2      38      86 ..     627     675 ..     618     684 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.58
  Hrs_helical   8 ssveifvnrmksnsarGrsianDsavqs 35 
                  + +e++   ++s  ++Gr++ +  av s
   CCE29041.1 435 ELLEVLGGTIESRDQKGRTVLHHIAVTS 462
                  568999999***********99988876 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00068
  Hrs_helical  38 qkltamhsqllkriqeqeekraeyeslqdklaqikearealdalreehk 86 
                  ++l amh++l  +  ++ e r+++e+l +++++ + ar+ + +l +  +
   CCE29041.1 627 TSLDAMHATLRTTSTQLGEARRSVEQLTESVKKQQLARQKVSNLAHARE 675
                  5799***********************************9988866544 PP

>> Med2  Mediator complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.5   0.00023      0.41      44      99 ..     622     677 ..     596     678 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
        Med2  44 qksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekekeeeerqrkeee 99 
                 +k  + ++ + h+ L  + ++l +a++ veql+e+ k+++  ++k  + ++ +e+e
  CCE29041.1 622 MKGKQTSLDAMHATLRTTSTQLGEARRSVEQLTESVKKQQLARQKVSNLAHAREDE 677
                 444456788999*******************************9997777777666 PP

>> ParB  ParB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.8   0.00032      0.56      23      99 ..     594     669 ..     587     689 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00032
        ParB  23 ekkdvelseliekvkeeiekvqsdtelaedeqkseilklikkeskrlkkpkkkdkavvekLaefedkkqfarkktkk 99 
                 + + ++ +e+i+++++ +++ + +  ++e   k++ l+++++  ++  ++   +  +ve+L e+  k+q ar+k+++
  CCE29041.1 594 QRTRESSDEIIASITHLLNE-TGAAFQQEMKGKQTSLDAMHATLRTTSTQLGEARRSVEQLTESVKKQQLARQKVSN 669
                 667778899***********.66666777889999**********999999999999*****************965 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.4    0.0016       2.9      42     121 ..     605     689 ..     594     692 .. 0.80
   2 ?   -3.3   0.0       5.8     1e+04     110     129 ..     745     764 ..     732     792 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0016
       Muted  42 enikklvnelkeqllpkcles......mkenLselnkkleaalekverllqkeleeekrkseqlqekeeerkaeweeflkelqekk 121
                  +i++l+ne+ +  +++++ +      m+ +L++++++l +a+ +ve+l +   ++++   +++++   +r++e+  ++ e+++ +
  CCE29041.1 605 ASITHLLNETGAAFQQEMKGKqtsldaMHATLRTTSTQLGEARRSVEQLTES-VKKQQLARQKVSNLAHAREDEQLRLIYEQSQSS 689
                 5666777777777666666666667779999*****************9999.677778999999999999999999999998865 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.8
       Muted 110 weeflkelqekkeevDeefe 129
                   + ++ l++++++v+ +++
  CCE29041.1 745 TRKMVQALKSRSRDVEVKYR 764
                 33333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1198  (0.0668191); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.43
# Mc/sec: 5713.35
//
Query:       CCE29042.1  [L=413]
Description: uncharacterized protein CPUR_02733 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-07   29.8   1.3    4.4e-07   29.8   1.3    2.0  2  Complex1_LYR    Complex 1 protein (LYR family)
    0.00023   21.9   0.2    0.00065   20.4   0.2    1.9  1  Complex1_LYR_2  Complex1_LYR-like
  ------ inclusion threshold ------
      0.072   13.7   1.8        0.3   11.7   0.4    2.3  2  Complex1_LYR_1  Complex1_LYR-like
       0.24   10.6   0.5       0.43    9.8   0.4    1.4  1  DUF3881         Domain of unknown function, E. rectale Gene d


Domain annotation for each model (and alignments):
>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   1.3   9.9e-11   4.4e-07       3      45 ..      14      54 ..      12      71 .. 0.83
   2 ?   -3.5   0.0       2.5   1.1e+04      12      21 ..     287     296 ..     283     302 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 9.9e-11
  Complex1_LYR  3 vLsLYRalLRearkfpdyntreyfrrriRdeFrknkhvtDpek 45
                   L+LYR+lLRea+++p    r+   + i+++F+++++ +D   
    CCE29042.1 14 PLQLYRHLLREASYLPPAF-RKVVDSTIQKRFHEHRK-KDALV 54
                  69**************777.****************9.55544 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.5
  Complex1_LYR  12 Rearkfpdyn 21 
                   R++++++++ 
    CCE29042.1 287 RTSNHWDWEA 296
                   8999999876 PP

>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   1.5e-07   0.00065       1      41 [.      14      53 ..      14     110 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.5e-07
  Complex1_LYR_2  1 vlsLYrrllrelrelppelrslgdayvraefrrhkhlknpe 41
                    +l+LYr llre+  lpp+ r+  d  ++++f +h+ +k++ 
      CCE29042.1 14 PLQLYRHLLREASYLPPAFRKVVDSTIQKRFHEHR-KKDAL 53
                    68**********99*******************44.44444 PP

>> Complex1_LYR_1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   6.6e-05       0.3       4      57 ..      15      69 ..      13      76 .. 0.80
   2 ?    0.1   0.0      0.28   1.3e+03      12      32 ..      85     104 ..      75     114 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.6e-05
  Complex1_LYR_1  4 lrlyrallkaarrfPlrsrreivaeevraafr.hplndslttke.vdyklllgwer 57
                    l+lyr ll+ a  +P + r+ +v   ++  f  h  +d+l tk   + k  l   r
      CCE29042.1 15 LQLYRHLLREASYLPPAFRK-VVDSTIQKRFHeHRKKDALVTKRlAKAKSSLRMLR 69
                    89**************9988.99999999996488999999998544454555555 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.28
  Complex1_LYR_1  12 kaarrfPlrsrreivaeevra 32 
                     k+  r+    rre++ae vr 
      CCE29042.1  85 KGFGRTG-LRRRELMAELVRP 104
                     4444554.45899*****995 PP

>> DUF3881  Domain of unknown function, E. rectale Gene description (DUF3881)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4   9.5e-05      0.43     155     188 ..      52      85 ..      44     102 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 9.5e-05
     DUF3881 155 kqeekekeeskkrkkllaaAkeGdeeAiesLtle 188
                   ++k+  ++k+  ++l+aA +Gd++A+++L ++
  CCE29042.1  52 ALVTKRLAKAKSSLRMLRAANSGDKDAMQNLVMK 85 
                 4455666677888899***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2913.86
//
Query:       CCE29043.1  [L=512]
Description: related to nicotinamide mononucleotide permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-31  109.1  30.8    2.5e-31  108.9  30.0    1.4  2  MFS_1           Major Facilitator Superfamily
  ------ inclusion threshold ------
        8.5    5.3  38.6       0.41    9.7  15.4    2.7  3  Acyl_transf_3   Acyltransferase family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9  30.0   2.8e-35   2.5e-31       1     352 [.      66     435 ..      66     436 .. 0.85
   2 ?   -2.7   0.0      0.23   2.1e+03     156     180 ..     458     482 ..     449     494 .. 0.54

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 2.8e-35
       MFS_1   1 lllaaflsalarsilgpalplalaedlg..ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqG 96 
                 l+++++l++l+r +++ a   +l edl     ps ++++++++++ ++++ +p   l  +f +  +l l ++l++++ ++l  +++++  ll+ r++ G
  CCE29043.1  66 LCIMYLLAFLDRVNIANAKIYHLREDLDmlNPPSRFNTAIVIFFVPYILFEIPSNMLLKKFTPATWLSLNMFLLGVT-TILQgVVQNYAGLLATRFFLG 163
                 578999999999999988888**999776558899**************************9999************.777765588889********* PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee. 188
                 l++ ++fp++ +li  w+ + e  r ++++  ++ l+ ++g ll++++ +  g      Wr++f++ +++++l+   f++llp  p +  + ++ e+  
  CCE29043.1 164 LFETGMFPGAFYLIGMWYRRHEAQRRYSFFFNSTTLAGAFGSLLAAAIGQMSGqrgysgWRWIFILEGAFTVLVSFAFYFLLPSFPEQATWLREDERQy 262
                 *************************************************99999********************8887777766666666666666657 PP

       MFS_1 189 ...........kgtgpaplvp....awkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrl 271
                            +g +++        + + l+  +vl+  +++  l++    +g+ ++ p++  + +g+s   ++ l +  +++v+++++++++++sdrl
  CCE29043.1 263 vaaklrldqgdAGLERS---ItlsdVGRVLRDYKVLLgGVMYLGLVV--PAYGYAYFAPSI-ISSYGYS-PTQTQLRSVPPWAVAFVFSMIVAFVSDRL 354
                 77777777665333333...133577888888888874444444444..7888*******7.*******.7899999*********************8 PP

       MFS_1 272 grrrrlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfn.tagslggalg 352
                  +  r l+a+l+++la +g+a+l + ++++ + ++ +++ + g+ +++p++  + + +++ +++ ++ ++ +  +g+lgg+++
  CCE29043.1 355 RH--RALFAVLAVFLAIAGFAVLKAVNTNIDVQYMALFLAVmGVYTAMPIIVCWFNMNLGGHHRRAIGSAWQiGFGNLGGIIA 435
                 87..99******************996666666655555554*****************999999999999978888****98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.23
       MFS_1 156 ilaivsllafvlfllllpeepperk 180
                  ++ vs++a+vl +l  + ++++r+
  CCE29043.1 458 GFCCVSAVACVLYALACWKTNRDRE 482
                 3344444444554555555555544 PP

>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  15.4   4.6e-05      0.41     131     271 ..     104     245 ..      52     251 .. 0.68
   2 ?    3.0  12.6    0.0049        44     160     277 ..     298     409 ..     287     423 .. 0.72
   3 ?   -1.2   0.0      0.09     8e+02     226     277 ..     423     475 ..     408     490 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 4.6e-05
                    xxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 131 tghlWfLwalfvlylllpll........lrllrkvrkshlllllilllllslvfirhelfgpatsvgllplpsvlallfflfGalladaddrdrnl 218
                      +  f+++         l+         +++   + s +++ll+++++l  v+ ++++     +++ l+    +  +f+l+G++++++  ++r +
     CCE29043.1 104 AIVIFFVPY--------ILFeipsnmllKKFTPATWLSLNMFLLGVTTILQGVVQNYAGLLATRFFLGLFETGMFPGAFYLIGMWYRRHEAQRRYS 191
                    334443333........33344443333788888888888888888888888888888866666666666655555***************99988 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 219 srglkislllsllllalillalfgqtdg.gglvasvliqsaslllvslgimlll 271
                           l+ ++ +l+++ ++  + + g +g+ ++     a+ +lvs+++++ll
     CCE29043.1 192 FFFNSTTLAGAFGSLLAAAIGQMSGQRGySGWRWIFILEGAFTVLVSFAFYFLL 245
                    777777777777766666666666666667888888888888888888888875 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0049
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 160 shlllllilllllslvfirhelfgpatsvgllplpsvla.llfflfGalladaddrdrnlsrglkislllsllllalillalfgqtdggglvasvl 254
                     +++l l++ ++  ++f +  +  +  s ++ +l sv+  ++ f+f +++a  +dr r +     + ++l+++l+++++++l +++   +++++++
     CCE29043.1 298 GVMYLGLVVPAYGYAYFAPSIISSYGYSPTQTQLRSVPPwAVAFVFSMIVAFVSDRLRHR----ALFAVLAVFLAIAGFAVLKAVN---TNIDVQY 386
                    555666666666777777777778888888888888777899999999999999999766....4444444444444444444444...5788888 PP

                    xxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 255 iqsaslllvslgimllllllfal 277
                       + +++ + ++m +++++f +
     CCE29043.1 387 MALFLAVMGVYTAMPIIVCWFNM 409
                    88888888888888898888876 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.09
                    xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 226 lllsllllalillalfgqtdg.gglvasvliqsaslllvslgimllllllfal 277
                    + +++  l +i++ + + +d+ g +  s  ++s+  ++++++++++l++l + 
     CCE29043.1 423 WQIGFGNLGGIIASFVFEQDKaGKSDYSLGYSSCIGFCCVSAVACVLYALACW 475
                    55555556666666666665554444444455555555555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3865.51
//
Query:       CCE29044.1  [L=543]
Description: probable MUP1-High affinity methionine permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-83  279.9  20.5    4.1e-83  279.6  20.5    1.1  1  AA_permease_2  Amino acid permease
    4.6e-19   68.4  17.0    7.3e-19   67.7  17.0    1.2  1  AA_permease    Amino acid permease
  ------ inclusion threshold ------
        1.1    9.5   5.8       0.73   10.0   0.7    3.2  4  DUF5368        Family of unknown function (DUF5368)


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.6  20.5   6.9e-87   4.1e-83       1     425 []      51     481 ..      51     483 .. 0.87

  Alignments for each domain:
  == domain 1  score: 279.6 bits;  conditional E-value: 6.9e-87
  AA_permease_2   1 lsllsafalvigsvigsgifvkn.....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpv 91 
                    ++  sa++l+++++ig+gif+++     + +s+g +l++wv +++++   a+ +vy+El++ lpr+gG+++y++ ++ ++ +  +  ++ +  +++
     CCE29044.1  51 IGVPSAALLIFNRTIGTGIFATPatilaQCGSPGLSLFIWVAGMIIAA--AGTAVYMELGTGLPRNGGEKNYLEFVYRRPRYLATCLYTGYVMLLG 144
                    67889********************98888888888888888877776..9********988************9998777766666668999999 PP

  AA_permease_2  92 lasilsv.aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdg....ggfsslstetdtf 182
                    +a+++sv +++yll+a++  ++ ++w ++++a a+l++ ++i+  + +++ ++qn+lgi+ki  +++++++ +l+ +++    +gfs         
     CCE29044.1 145 WAAGNSViFGEYLLHAAQ--VEATQWRQRGLALACLTGAFVIHGTALRWGLRLQNVLGIIKI-AVVVLIVVSPLANLHRvreiDGFS-----APFE 232
                    99987555999****985..7799**************************************.69999999*****97754445665.....3222 PP

  AA_permease_2 183 fpngwp.gvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaii 275
                     ++g+  g++ +l+ v+wsf+G+++a++ ++e +   +++++a++++l++v+vlyll n+a++++v+ +e+ ++++l+  aa +f++++g  ++++
     CCE29044.1 233 GTTGSAyGIVTALYNVIWSFAGYSNANYALSETRDpvRTLRRAAPLALATVSVLYLLANVAYFAGVSREEMLSSKRLV--AASLFRNMFGANAERA 326
                    33366636899*********************77667***********************************999975..9999999999****** PP

  AA_permease_2 276 vvilialsllgaintavigssrvlealardgvlP..rffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliiga 369
                    +++++als+lg+++++++++ r++++l+r+g+lP  rffa+  +f++p+++++ +++v+ i  ++   a ++aynf+l++ s++l i++ l++ ga
     CCE29044.1 327 LSVFVALSALGNVLSVIFSQGRLVQELGREGILPfsRFFASNKPFNAPLAGLFAHWLVTAIT-VIAPPA-GDAYNFVLNLISYPLAIINVLVA-GA 419
                    **********************************************************9554.444444.89*****************9998.77 PP

  AA_permease_2 370 lilrkkrphlkr.....pgkilvaiigalfllfllvalffppkgpa.tqssliytiiltval 425
                    l++ ++++++++      +  +v+++++ ++++l+va+f+pp++ + +++sl y i ++v++
     CCE29044.1 420 LVHLYRNRERREwhppiSATLPVVLFFLASNIYLVVAPFVPPEKGNgVYESLPYYIHCVVGF 481
                    777777777655355444458********************998877********8877765 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7  17.0   1.2e-22   7.3e-19      10     423 ..      64     455 ..      60     462 .. 0.83

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 1.2e-22
  AA_permease  10 viGtglfvglgvvlsqaGplgallayllagvviflvmlslg.eiatngpksggfytyasrflgp....elGfviGlnylfswitvlaleltaasiliq 102
                   iGtg+f   + +l+q+G  g+ l + +ag++i++++ +++ e+ t  p++gg  +y + +  +    +   ++G+   ++   ++++ ++  ++l++
   CCE29044.1  64 TIGTGIFATPATILAQCGSPGLSLFIWVAGMIIAAAGTAVYmELGTGLPRNGGEKNYLEFVYRRprylATCLYTGYV--MLLGWAAGNSVIFGEYLLH 159
                  69********************99999*********9999879**************98777663323455555555..44445578999999***** PP

  AA_permease 103 fwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeegafkn 200
                   ++     + + + ++  l+  ++i+  ++++  + + +l +iki a++ +i+v+  +la+ ++ ++          + f++ + +      +g+ ++
   CCE29044.1 160 AAQVEATQWRQRGLALACLTGAFVIHGTALRWGLRLQNVLGIIKI-AVVVLIVVS--PLANLHRVRE---------IDGFSAPFEGT-----TGSAYG 240
                  **663333335555777777777888899************9996.677788888..4555555555.........22234444455.....8899** PP

  AA_permease 201 fisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinavilt 298
                  ++ ++  v+ +f+G+++  ++ +E++dP +++ +a   ++ ++ ++Y+l+ +++ ++v+r    + +  + a s+f +++     ++l++++++  l+
   CCE29044.1 241 IVTALYNVIWSFAGYSNANYALSETRDPVRTLRRAAPLALATVSVLYLLANVAYFAGVSREEMLSSKRLVAA-SLFRNMFGANAERALSVFVALSALG 337
                  **************************************************************8888866655.9999999999989888888876666 PP

  AA_permease 299 aalssansslysasRvlyslakdglaP..kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnflla..isaliglivwlliilsylrfRk 392
                  ++l    s ++s  R+++ l ++g++P  ++++  +  + Pl+++++ +++ ++ +    ++++a  ++nf+l+  ++ l+++ v+++ +l +l +R+
   CCE29044.1 338 NVL----SVIFSQGRLVQELGREGILPfsRFFASNKPFNAPLAGLFAHWLVTAITV----IAPPAGDAYNFVLNliSYPLAIINVLVAGALVHL-YRN 426
                  666....56899****************999999999999*********9999999....5555566688888833567899999999999999.999 PP

  AA_permease 393 alkyqgrsieelgfkaallplgvilvlaali 423
                     +++ ++  ++++++++ +++ + + +++
   CCE29044.1 427 R--ERREWHPPISATLPVVLFFLASNIYLVV 455
                  8..99999999*****999999988777766 PP

>> DUF5368  Family of unknown function (DUF5368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.6   9.5e+03      19      29 ..     201     211 ..     193     222 .. 0.47
   2 ?   10.0   0.7   0.00012      0.73      23      76 ..     282     336 ..     276     343 .. 0.77
   3 ?   -0.6   0.0      0.24   1.5e+03      31      72 ..     345     388 ..     330     391 .. 0.75
   4 ?   -1.3   0.0      0.41   2.4e+03      19      39 ..     404     424 ..     398     443 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.6
     DUF5368  19 alfwillalav 29 
                  +   +++l+v
  CCE29044.1 201 IIKIAVVVLIV 211
                 32222222222 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00012
     DUF5368  23 illalavlvtvafvlvlirerklsskrlvraelvg.lvGgvlalllvaavtqsgl 76 
                 ++ +l +l  va+++ + re+ lsskrlv a+l+  ++G+ +  +l ++v+ s l
  CCE29044.1 282 TVSVLYLLANVAYFAGVSREEMLSSKRLVAASLFRnMFGANAERALSVFVALSAL 336
                 5667888999**********************98526677666666666666655 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.24
     DUF5368  31 vtvafvlvlirerklsskrlvrae..lvglvGgvlalllvaavt 72 
                     +v  l re+ l   r+  ++    +++ g+ a +lv+a+t
  CCE29044.1 345 SQGRLVQELGREGILPFSRFFASNkpFNAPLAGLFAHWLVTAIT 388
                 44556666788899999999888733468999999999999988 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.41
     DUF5368  19 alfwillalavlvtvafvlvl 39 
                  + ++l ++ vlv+ a+v + 
  CCE29044.1 404 LISYPLAIINVLVAGALVHLY 424
                 566899999999999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3748.25
//
Query:       CCE29045.1  [L=189]
Description: uncharacterized protein CPUR_02736 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-25   90.5   2.2    1.8e-25   89.9   2.2    1.2  1  AltA1     Alternaria alternata allergen 1
     0.0016   18.4   0.1     0.0026   17.7   0.1    1.3  1  PepSY_2   Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> AltA1  Alternaria alternata allergen 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   2.2     2e-29   1.8e-25       1     110 []      46     173 ..      46     173 .. 0.94

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 2e-29
       AltA1   1 itdFdyha...fttpah.nsigsvsFnlsntaledttlsCsasssqlsdffygdtdvykCk....egeskfrFslnresgelainqelacsdek.gftg 90 
                 ++dFd+ha   fttpah ns g v+F+l+n+al + t++C+ +s ql+dffyg+ + ykC+    + e++f+F  +r+s +l inq++ac de+ ++++
  CCE29045.1  46 VKDFDFHAsylFTTPAHqNSAGFVKFTLENPAL-NFTSQCEGRSGQLDDFFYGNFV-YKCTqpvpGVETTFTF--SRPSSQLLINQSWACVDEQsSWKA 140
                 79******************************9.88******************88.*******99999****..*****************9988888 PP

       AltA1  91 egsv.lt.kCka..........gg.yssrdvtC 110
                 +g + l+ +Ck+          g+ yssr+v C
  CCE29045.1 141 QGGAnLKlDCKDetwknpdwkqGQtYSSRTVSC 173
                 88887444****9********9778******99 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   2.9e-07    0.0026       6      51 ..       5      51 ..       1      57 [. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.9e-07
     PepSY_2  6 lalallaaaAlAgrrdtdspkadwlpreklvaklea.qGykvkkiev 51
                + ++llaa+A+A++    + +++ ++ e+  +k    +G++vk++++
  CCE29045.1  5 ISALLLAATAMAAPAPAPATVSEPMTHETCTQKSGRtRGWQVKDFDF 51
                6789999999999999999******999998888776*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1385.88
//
Query:       CCE29046.1  [L=589]
Description: uncharacterized protein CPUR_02737 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0016   17.8   0.0     0.0036   16.7   0.0    1.5  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
     0.0033   17.7   0.0       0.74   10.1   0.0    2.6  2  AAA_22        AAA domain
     0.0043   16.0   0.0       0.43    9.5   0.0    2.2  2  AAA_10        AAA-like domain
     0.0044   17.4   0.2        3.3    8.1   0.0    2.9  3  AAA_16        AAA ATPase domain
     0.0073   16.4   0.0        2.9    7.9   0.0    2.5  2  DUF87         Helicase HerA, central domain
  ------ inclusion threshold ------
      0.023   14.3   0.0       0.06   13.0   0.0    1.6  2  Zot           Zonular occludens toxin (Zot)
      0.088   12.1   0.0        0.2   10.9   0.0    1.6  1  Zeta_toxin    Zeta toxin
        1.2    9.1   3.9        3.7    7.5   0.3    2.8  2  DUF1601       Protein of unknown function (DUF1601)


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.6e-06    0.0036      27      70 ..     119     162 ..     103     165 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.6e-06
                   TS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TT CS
  FtsK_SpoIIIE  27 sgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPe 70 
                    + p+v+  + ++s + ++G++gsGKS +l  ++ + ++ ++++
    CCE29046.1 119 EDAPFVHYNVAAPSSTFICGSQGSGKSHTLSCMLENCLLESDAN 162
                   5889999999999*********************9999888776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00033      0.74       6      37 ..     132     163 ..     128     249 .. 0.82
   2 ?    4.9   0.0     0.013        29      82     113 ..     368     406 ..     346     426 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00033
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee 37 
                 ++++++G  G+GK+++l  +le+   e++a++
  CCE29046.1 132 SSTFICGSQGSGKSHTLSCMLENCLLESDANT 163
                 6899*************999987665555555 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.013
      AAA_22  82 leqalrarav..ielliiDEaqh.lr....seealeeLr 113
                 +   + ++ +   +++ +DEa++ ++    s+++ e L 
  CCE29046.1 368 CLSLFLEQNTktGRVIALDEAHKyMTdsaeSQTLTESLL 406
                 44444444444456*********6657443244444442 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0078        17      22      47 ..     132     157 ..     124     163 .. 0.81
   2 !    9.5   0.0   0.00019      0.43     231     283 ..     370     426 ..     361     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0078
      AAA_10  22 sasliiGdlGnGKSvlakllvlyisl 47 
                 s ++i G+ G GKS +   +  +++l
  CCE29046.1 132 SSTFICGSQGSGKSHTLSCMLENCLL 157
                 3469************9999888766 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00019
      AAA_10 231 refassdkkefkvvifDEa.wiftssaeGkkllkel...vRiGRsynaavylvtqsa 283
                 + f  ++ k+ +v+ +DEa +++t+sae ++l ++l   +R  R   a v+++tq++
  CCE29046.1 370 SLFLEQNTKTGRVIALDEAhKYMTDSAESQTLTESLlatIRLQRHLGARVIIATQEP 426
                 346889************96799*********999744469999**********986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0015       3.3      24      49 ..     131     156 ..     125     243 .. 0.80
   2 !    6.3   0.0    0.0052        12     106     164 ..     329     411 ..     259     421 .. 0.56
   3 ?   -2.0   0.0       1.8     4e+03      82     129 ..     450     498 ..     432     508 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0015
      AAA_16  24 pelvllsGesGvGKsslvrellrale 49 
                 p+++++ G +G+GKs  + + l+   
  CCE29046.1 131 PSSTFICGSQGSGKSHTLSCMLENCL 156
                 6899**************99998544 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0052
      AAA_16 106 a......................avpelagaeasrllellkrll.allsrderplvlvlDdlq...wadeaslqllaaLlrlles 164
                 +                      ++p  ++++a +l++ + +l+ ++ ++++   v+ lD+++      ++s++l ++Ll++   
  CCE29046.1 329 SrvrvdtatrwegkpgqltivdlSCPCTTAESACALFNICLSLFlEQNTKTG--RVIALDEAHkymTDSAESQTLTESLLATIRL 411
                 0333444444666666776666655555666667777777777755555544..6********5543333677777777776544 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.8
      AAA_16  82 lrqlldeaesaeleawrekleealaavpelagaea.srllellkrllal 129
                 l+ l+ ++++a+++  +   +e +++++++a   +  +l +l++r++al
  CCE29046.1 450 LQSLKKHLAAAQPNLIQSSSTEIAGSGDQVAVLNRpDALTALFARIVAL 498
                 4445555555555555555555555544554444466666666666644 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0013       2.9      28      54 ..     136     162 ..     127     172 .. 0.86
   2 !    5.8   0.0    0.0057        13     155     209 ..     291     352 ..     192     365 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0013
       DUF87  28 ilgsTGsGKSntvavLleellekkgat 54 
                 i gs GsGKS+t + +le+ l + +a+
  CCE29046.1 136 ICGSQGSGKSHTLSCMLENCLLESDAN 162
                 78999*************988766555 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0057
       DUF87 155 eelrklknqaiarlldkledllrkggsf.......snsstdliallleklekegkitiidls 209
                 ++l+k+++   ++ l++le+++ ++           + s   +++  ++++k+g++ti+dls
  CCE29046.1 291 ASLSKDQTGPLNQRLETLESFMAQEDVSrvqysttRAASRVRVDTATRWEGKPGQLTIVDLS 352
                 23344444444444444444444444445555555456666777777**************9 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.7   6.1e+03       4      15 ..     135     146 ..     134     154 .. 0.85
   2 ?   13.0   0.0   2.7e-05      0.06      76     129 ..     375     428 ..     345     445 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.7
         Zot   4 lvtGapGsgKts 15 
                 +  G +GsgK+ 
  CCE29046.1 135 FICGSQGSGKSH 146
                 6789******96 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.7e-05
         Zot  76 atidkgallviDEcqeifpvrakegrkdpevi.naftehRhlgwDivlltqdisk 129
                 + ++ g ++ +DE+++    +a+  +   e++       Rhlg  +++ tq++++
  CCE29046.1 375 QNTKTGRVIALDEAHKYMTDSAES-QTLTESLlATIRLQRHLGARVIIATQEPTI 428
                 4556899*********99988885.66777776999****************986 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.8e-05       0.2      14      38 ..     129     153 ..     114     161 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.8e-05
  Zeta_toxin  14 erPklillgGqpGAGKselaellkd 38 
                   P + ++ G++G+GKs++++ + +
  CCE29046.1 129 AAPSSTFICGSQGSGKSHTLSCMLE 153
                 7899***************987665 PP

>> DUF1601  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3      0.14   3.1e+02       7      20 ..     223     236 ..     220     238 .. 0.86
   2 ?    7.5   0.3    0.0017       3.7       9      22 ..     397     410 ..     395     415 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.14
     DUF1601   7 yleeqrLserLlva 20 
                 + +e+rLs+r l++
  CCE29046.1 223 EVQELRLSQRNLNT 236
                 579*******9886 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0017
     DUF1601   9 eeqrLserLlvaIr 22 
                 e+q L+e Ll++Ir
  CCE29046.1 397 ESQTLTESLLATIR 410
                 89***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4100.84
//
Query:       CCE29047.1  [L=251]
Description: uncharacterized protein CPUR_02738 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00032   21.4   0.4    0.00057   20.5   0.4    1.4  1  FAR1      FAR1 DNA-binding domain
  ------ inclusion threshold ------
        0.2   12.0   2.5       0.21   12.0   0.9    1.8  2  AFT       Transcription factor AFT


Domain annotation for each model (and alignments):
>> FAR1  FAR1 DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.4   6.4e-08   0.00057      17      86 ..      63     131 ..      49     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 6.4e-08
        FAR1  17 kksrrsrkdgeiirrkfvCskeGfkkekkktkeakrerastrtgCkAmlvvkkekegkwvvtklvk..eHNH 86 
                 +k r+ +k g +++  fvC + G++++++++    r+ ++++++C  ++v   +k+ +w+ t  vk  +HNH
  CCE29047.1  63 TKDRTRKKAGVMTSCVFVCDR-GSRRPSASA--GLRNTTTQKIDCPFKIVASTSKRAQWKWTYHVKvgQHNH 131
                 3455666788899******98.888888888..89999*************999977777665544338**9 PP

>> AFT  Transcription factor AFT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.9   2.3e-05      0.21      68     109 ..      89     131 ..      52     132 .. 0.76
   2 ?   -3.2   0.0       1.2   1.1e+04      53      55 ..     214     216 ..     189     236 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
                 ....XXXXXXXXXX----EEEEEEETTTT.EEEEEEEE---SS CS
         AFT  68 skkkkkkravsrynsCPfrvratyslkrk.kWsivvvnnehsh 109
                 s +   +++++++  CPf++ a+ s + + kW+  v   +h+h
  CCE29047.1  89 SASAGLRNTTTQKIDCPFKIVASTSKRAQwKWTYHVKVGQHNH 131
                 55566677888999***********987658999999999988 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.2
                 ... CS
         AFT  53 eka 55 
                 +++
  CCE29047.1 214 QQS 216
                 222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1910.00
//
Query:       CCE29048.1  [L=521]
Description: related to sugar transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.2e-103  345.6  26.0     5e-103  345.4  26.0    1.0  1  Sugar_tr         Sugar (and other) transporter
    4.1e-27   95.0  34.2    7.6e-24   84.3  19.4    2.0  2  MFS_1            Major Facilitator Superfamily
     0.0077   14.6   2.1     0.0077   14.6   2.1    3.5  4  OATP             Organic Anion Transporter Polypeptide (OATP)
  ------ inclusion threshold ------
       0.04   14.0   0.7        1.6    8.9   0.1    2.9  2  DUF4234          Domain of unknown function (DUF4234)
        2.7    8.6  11.1       0.11   13.1   1.9    3.0  4  Phage_holin_3_2  Phage holin family 2


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.4  26.0  1.4e-106    5e-103       1     452 []      16     469 ..      16     469 .. 0.95

  Alignments for each domain:
  == domain 1  score: 345.4 bits;  conditional E-value: 1.4e-106
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 v+++++lg +l+gYd g++g+ +++++f   f++ +s+         + +iv+if vG+++Gs+++  +g+r+GR++++  +++++v+g vlqa +   
  CCE29048.1  16 VTTLTSLGFMLIGYDNGLMGGLVNSPAFGHTFNYPSSTM--------IAVIVAIFEVGCFFGSILSAVFGERLGRRWTIGYGCAIMVVGVVLQASSS-- 104
                 578889999******************777776666663........56************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                  s  ++i+gRv++G+g+G+++ ++P+ ++E++pk+ Rg++v  + + + +Gi++ ++++++++ +++a  wri++ lq +   l+l+ll ++PE+Pr+l
  CCE29048.1 105 -SRAQMIIGRVVSGMGLGIVNSTIPVMQAEFSPKATRGIFVCAQLSTLNLGIFLVYWIDYAFSSNTAAYAWRIPVSLQGICLALMLLLLPLIPETPRWL 202
                 .89***********************************************************888888******************************* PP

                 HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH...........HTTHHHHSH.....HHHHHHHHHHHHHHTTHHHHHHHTTTHH.HHSS-TH CS
    Sugar_tr 199 vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee......kaswkellsskt..vrqrlligvvlqifqqltGinaimyysptif.enlglsk 288
                   +g+ +e  +vla +++ +++d e++   +s+ ++   e      + sw+ ll   +   r rll+++++q+fqql Gina++yy +t+f +++g+++
  CCE29048.1 203 AAHGRADECARVLAAMQDATLDDIEVQRQHASIMQAIALEasqqhgSSSWRHLLADDGvhSRSRLLMACAIQAFQQLGGINAVTYYTSTLFsKSIGFDD 301
                 *******************9999999999888888877667777999*********99999*************************999994579***9 PP

                 H..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS......CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTT CS
    Sugar_tr 289 s..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks...kaasivaivfialfialfalgwgpvpwvlvsElfpqs 382
                    +l+++ + ++ f+a+f+ +fl+dr+GR++ll+  +++ma+++++ ++  + +++++    +a+i+a+ +++lf  +f++g+  ++wv+ sE+ p++
  CCE29048.1 302 HtaALMSGFLQTWFFIASFIPWFLIDRVGRKPLLVSMISVMAAAMAVQSGLIYQIENETsaaRSAGIAATLMLFLFQGAFTIGFQATVWVYPSEILPLR 400
                 9************************************************77777777778999************************************ PP

                 THHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 383 vRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +R+++++i++a nw++n+ + +++pi+ e+ig + +f++fa+l++  + +++ff+petkg +le++++lf
  CCE29048.1 401 LRQTGSSISTAFNWIFNYTVVQITPIAIENIG-WRTFIIFAILNATWVPIIYFFFPETKGIELEDVDALF 469
                 ********************************.*********************************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3  19.4   2.1e-27   7.6e-24       2     288 ..      21     346 ..      20     348 .. 0.83
   2 !   22.6  14.9   1.2e-08   4.3e-05      44     176 ..     315     458 ..     311     511 .. 0.82

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 2.1e-27
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispse.igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGl 97 
                 +l+++l++++ ++ g ++ + a ++++++  s+ i  +++++ +g++++s++ +++++r+Grr+++  g +++++g ++l  +ss+   ++++rv++G+
  CCE29048.1  21 SLGFMLIGYDNGLMGGLVNSpAFGHTFNYPSSTmIAVIVAIFEVGCFFGSILSAVFGERLGRRWTIGYGCAIMVVG-VVLQASSSSRaQMIIGRVVSGM 118
                 689999999999999999999*******6555538889999***********************************.666644888889********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                 g g++++++ ++ a+ +pk  rg  +    ++ +lG+ l + +  +++s+     Wr +  + +i ++l+++   ll + ++++r+  ++ +       
  CCE29048.1 119 GLGIVNSTIPVMQAEFSPKATRGIFVCAQLSTLNLGIFLVYWIDYAFSSNTAayaWRIPVSLQGICLALMLL---LLPLIPETPRWLAAHGRADecarv 214
                 ************************************************8888999**************977...788888999999888888899*** PP

       MFS_1 189 ...........................kgtgpaplvp.......awkallkdpvl......w.illialllfffgfsglltllplylqevlglsgllla 246
                                            +                 w++ll+d  +      + ++ i ++    g++++++++ +++ +  g++   +a
  CCE29048.1 215 laamqdatlddievqrqhasimqaialE--------AsqqhgssSWRHLLADDGVhsrsrlLmACAIQAFQQLGGINAVTYYTSTLFSKSIGFD-DHTA 304
                 *************665555555555552........055555555888888885544433224677777777778888999999999*******.4667 PP

       MFS_1 247 glllallalvgailallagrlsdrlgrrrrlllallllllaa 288
                 +l++++l+  ++i++++  +l+dr+gr++ l+ +++++++a 
  CCE29048.1 305 ALMSGFLQTWFFIASFIPWFLIDRVGRKPLLVSMISVMAAAM 346
                 7777777777777765555555****9888888777777765 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 1.2e-08
       MFS_1  44 gaavaslplGrlsdrfGrrrvlllglllfalg.lllll.f.........a...sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa 128
                 +++++ +p+ +l+dr+Gr+++l+ ++ ++a++ ++  + +         a   +++ + l l ++qG+++ ++ +++ ++ +++ p + r  + ++ +a
  CCE29048.1 315 FFIASFIPW-FLIDRVGRKPLLVSMISVMAAAmAVQ-SgLiyqienetsAarsAGIAATLMLFLFQGAFTIGFQATVWVYPSEILPLRLRQTGSSISTA 411
                 555555555.788******99999998888883333.2443566665541577779989999999*****99999999********************* PP

       MFS_1 129 gfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                 ++ +       + ++ ++++gWr +f+i+ai+ + ++ ++++++pe++
  CCE29048.1 412 FNWIFNYTVVQITPIAIENIGWR-TFIIFAILNATWVPIIYFFFPETK 458
                 ***********************.9***********888788887654 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   2.1   2.2e-06    0.0077      30      84 ..      46     101 ..      38     104 .. 0.91
   2 !    4.0   1.0    0.0035        12     328     383 ..     103     157 ..     100     171 .. 0.81
   3 ?   -1.4   0.2      0.15   5.3e+02     275     375 ..     247     346 ..     156     368 .. 0.57
   4 ?    1.4   0.1      0.02        73     216     245 ..     433     467 ..     404     507 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.2e-06
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  30 rFklpssts.gliassneignillilfvsYfggrghrPrwigigallmalgsllla 84 
                  F++psst+  +i++++e+g+ + +++ + fg+r  r   ig+g+ +m +g +l a
  CCE29048.1  46 TFNYPSSTMiAVIVAIFEVGCFFGSILSAVFGERLGRRWTIGYGCAIMVVGVVLQA 101
                 69999988637899*************************************99976 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0035
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 328 saseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsllslllllll 383
                 s+s+A++++G v + g++lGi+ + + v + ++s+k++  + ++++l +l l ++l
  CCE29048.1 103 SSSRAQMIIGRV-VSGMGLGIVNSTIPVMQAEFSPKATRGIFVCAQLSTLNLGIFL 157
                 7899******85.78***********999999999998888777777666554443 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.15
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 275 eelkslkdfpkalkrllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvs 373
                 +  +s++++++      ++++++   +++  ++ +++++  +++    +  +   ++A+l+ G++   ++++  ++  +l+ ++  ++  + +++++++
  CCE29048.1 247 HGSSSWRHLLADDGVHSRSRLLMACAIQAFQQLGGINAVTYYTSTLFSKSIGFDDHTAALMSGFLQTWFFIA-SFIPWFLIDRVGRKPLLVSMISVMAA 344
                 444455555555555556666777777766667777777777777777777777777777777776555443.44555666666555555555555555 PP

                 xx RF
        OATP 374 ll 375
                  +
  CCE29048.1 345 AM 346
                 55 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.02
                 xxxxxxxxxxxxxxx.xxxxxxxxx....xxxxxx RF
        OATP 216 Wlgflilgvllllaa.iplffFPke....lpkkke 245
                 W  f+i+++l ++ + i++ffFP++    l++  +
  CCE29048.1 433 WRTFIIFAILNATWVpIIYFFFPETkgieLEDVDA 467
                 9999**99998876626789999996655433333 PP

>> DUF4234  Domain of unknown function (DUF4234)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00044       1.6       1      48 [.     140     187 ..     140     216 .. 0.78
   2 ?    2.0   0.0     0.064   2.3e+02      27      62 ..     358     392 ..     351     395 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00044
     DUF4234   1 rslavvilLsivTlGIYslyWl.ykltrelnrlsgr..kkttslllvflll 48 
                 r++ v+  Ls   lGI+  yW+ y +++++ +++ r   + +  +l+   l
  CCE29048.1 140 RGIFVCAQLSTLNLGIFLVYWIdYAFSSNTAAYAWRipVSLQGICLA---L 187
                 678999***************98899999999999944333333333...2 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.064
     DUF4234  27 relnrlsgrkkttslllvfll.lslitcgiysivway 62 
                 +e+ +  +   +   +l+++l  +  t+g+   vw+y
  CCE29048.1 358 NETSAARSA--GIAATLMLFLfQGAFTIGFQATVWVY 392
                 444444444..33333333332566999999999998 PP

>> Phage_holin_3_2  Phage holin family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         5   1.8e+04      11      26 ..      13      28 ..      11      31 .. 0.72
   2 ?   13.1   1.9   2.9e-05      0.11      16      67 ..      91     142 ..      85     154 .. 0.93
   3 ?    0.4   0.1      0.27   9.7e+02      40      56 ..     334     350 ..     323     373 .. 0.79
   4 ?   -3.1   0.0       3.4   1.2e+04      54      68 ..     418     432 ..     405     440 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5
  Phage_holin_3_2 11 LlviGalialGklLvs 26
                     Ll++ +l +lG +L++
       CCE29048.1 13 LLTVTTLTSLGFMLIG 28
                     6677788888888876 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.9e-05
  Phage_holin_3_2  16 alialGklLvseepitlrLfiGRvilGsavslvagvaLvqfpdlsplavvGi 67 
                      a++++G +L ++    ++++iGRv+ G ++ +v + + v+  ++sp a  Gi
       CCE29048.1  91 AIMVVGVVLQASSSSRAQMIIGRVVSGMGLGIVNSTIPVMQAEFSPKATRGI 142
                      7899********************************************9998 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.27
  Phage_holin_3_2  40 ilGsavslvagvaLvqf 56 
                      +l s++s++a+++ vq 
       CCE29048.1 334 LLVSMISVMAAAMAVQS 350
                      78899999999988775 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 3.4
  Phage_holin_3_2  54 vqfpdlsplavvGig 68 
                      +++ +++p+a+  ig
       CCE29048.1 418 YTVVQITPIAIENIG 432
                      456678888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3709.53
//
Query:       CCE29049.1  [L=334]
Description: related to lactonohydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-29  102.3   0.1    4.9e-29  101.6   0.1    1.4  1  SGL           SMP-30/Gluconolactonase/LRE-like region
    0.00016   21.8   0.0    0.00036   20.7   0.0    1.6  1  Arylesterase  Arylesterase
    0.00047   20.2   0.0     0.0016   18.5   0.0    1.9  1  Str_synth     Strictosidine synthase
     0.0016   18.4   1.0      0.045   13.8   0.1    2.8  2  NHL           NHL repeat


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.1   1.1e-32   4.9e-29      42     242 ..      95     312 ..      34     316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 1.1e-32
         SGL  42 svGaiaprkdgrlvvasksgl......alldlasg...eletladeeedekpllrfNDgvvdpdGrlwfGtmgdeeakgeev.....galyrldpd.gk 125
                  +Ga+    ++++++++++++      +++d  s    + etl++++ ++ + +++ND+v+++dG++wf+++ ++ ++g +      +++yr+dp  ++
  CCE29049.1  95 ANGAVNY--KEGVLFCAQGNRqhrgglIYMD--SEppyKTETLLSSFYGR-QFNSVNDVVIHSDGSIWFTDPVYGFDGGFRDeprlpCQVYRFDPArKS 188
                 4444433..5666666666554555423343..22233899999999999.*********************999998876678999*********999 PP

         SGL 126 lervlddltipNGlawspdgktlYl............aDsltrkiwaydvd..aeggklsnrrvfadlkkgegepDGlavDaeGnvwvAvwgggkvvrf 210
                 ++ ++d+++ pNG+++spd++t+Y+             D ++ +i+a+dv   a ++ l+nrr+fa  ++g   pDG+ +D  Gnv++ +  g+++  +
  CCE29049.1 189 VRAMADGFGRPNGICFSPDERTVYVtdtdwihgdgttDDFRASHIYAFDVTfyAGEPFLTNRRLFAMADTGV--PDGIKCDVYGNVYSGC--GDGINIW 283
                 *************************8888888777754556667*****8722455569******9888886..***************5..6889999 PP

         SGL 211 dpdGklieeiklpakrvtscaFgGpdlrtLyi 242
                 +  G l+++i +p   v++ +Fg +   tLy+
  CCE29049.1 284 SAGGVLLGRIMVP-GGVANFCFGRE--GTLYL 312
                 *************.9*******844..58875 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     8e-08   0.00036      37      72 ..     178     215 ..     174     220 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 8e-08
  Arylesterase  37 avvYysp..sevkvvasglssanGInidadkkyiyvad 72 
                   +v+ ++p  + v+ +a+g+  +nGI +++d++ +yv+d
    CCE29049.1 178 QVYRFDParKSVRAMADGFGRPNGICFSPDERTVYVTD 215
                   5666777335688899*********************9 PP

>> Str_synth  Strictosidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.7e-07    0.0016      37      76 ..     177     216 ..     141     219 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.7e-07
   Str_synth  37 GrllkydkstkvvkvlldkLyfanGialsedgsfvlvcet 76 
                  +++++d+  k+v+ ++d    +nGi  s+d+  v v++t
  CCE29049.1 177 CQVYRFDPARKSVRAMADGFGRPNGICFSPDERTVYVTDT 216
                 689*****************************99988776 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.046     2e+02       1      19 [.     142     160 ..     142     164 .. 0.85
   2 !   13.8   0.1     1e-05     0.045       1      20 [.     196     216 ..     196     217 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.046
                 BSSEEEEEEETTTEEEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaD 19 
                 fn+ ++v++ s+G i+ +D
  CCE29049.1 142 FNSVNDVVIHSDGSIWFTD 160
                 78889**********9666 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1e-05
                 BSSEEEEEEE.TTTEEEEEEC CS
         NHL   1 fnyPhGvavd.snGdiyVaDs 20 
                 f +P+G++ + +   +yV+D+
  CCE29049.1 196 FGRPNGICFSpDERTVYVTDT 216
                 899*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2537.41
//
Query:       CCE29050.1  [L=400]
Description: related to XAP-5 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-91  305.7   0.2      5e-91  305.0   0.2    1.3  1  XAP5          XAP5, circadian clock regulator
  ------ inclusion threshold ------
      0.023   13.4   4.5      0.045   12.4   4.6    1.6  1  Herpes_TAF50  Herpesvirus transcription activation factor (tr
        0.1   11.2  15.5       0.18   10.4  15.5    1.4  1  TFIIF_alpha   Transcription initiation factor IIF, alpha subu
       0.22   12.0   7.0        1.1    9.8   4.5    2.9  3  DFRP_C        DRG Family Regulatory Proteins, Tma46
        1.3    7.5   6.8        1.7    7.0   6.8    1.1  1  UPF0560       Uncharacterised protein family UPF0560
        1.4    9.4   8.2        4.4    7.7   8.2    1.8  1  PBP1_TM       Transmembrane domain of transglycosylase PBP1 a
        1.5    8.1   8.3        2.2    7.5   8.3    1.2  1  ORC6          Origin recognition complex subunit 6 (ORC6)
        1.5    6.8   5.8          2    6.4   5.8    1.1  1  DNA_pol_phi   DNA polymerase phi
        2.2    8.0   7.1        3.6    7.2   4.6    2.2  2  FAM176        FAM176 family
        4.5    8.2   8.0        9.7    7.1   7.5    1.9  1  TT_ORF2       TT viral ORF2
        5.4    5.2  10.1        7.5    4.7  10.1    1.3  1  CDC45         CDC45-like protein


Domain annotation for each model (and alignments):
>> XAP5  XAP5, circadian clock regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.0   0.2     3e-94     5e-91       1     248 [.      95     387 ..      95     388 .. 0.87

  Alignments for each domain:
  == domain 1  score: 305.0 bits;  conditional E-value: 3e-94
        XAP5   1 kkkkkkkskLSFgdddeeeeee...eekakkkeeeekkee............sekkeekekeeeeeekkkkkkkpnvdtsflpkaldkereekeaaere 84 
                 k+kk+ k+ LSF+ddd++++++   ++k+ ++++e    e            ++++e+ + e+e++++++ k+k+n+ ++++p+a++k+++ kea+ere
  CCE29050.1  95 KQKKTGKKLLSFHDDDDDDDDDngdDSKSGSRKKE----EggdsgsnngsitKSTTESPAGETETRKSSHPKVKANAAVGVIPRAVTKAALLKEATERE 189
                 7899********99888777663332222222222....223445555555422222223333333466677*************************** PP

        XAP5  85 eLrkeflalqeavkaeeieitfvfydGsnirrpgGvvrvkkgdtiwlfLdkark.......eklrkerrelarvsvddLmlvkedlIiPhhyefYdfiv 176
                 +Lr+ef+a qeavka+ei+i+f+fydGsn+  +gG+vrvkkgd++w++Ldk+rk        ++ + rr +arv+vddLmlv++++IiPhhy+fY+fi+
  CCE29050.1 190 ALRREFVAVQEAVKATEIAIPFIFYDGSNV--TGGTVRVKKGDFVWVLLDKSRKvgaerrvGERGNPRRAWARVGVDDLMLVRDNIIIPHHYDFYYFII 286
                 ******************************..***************************9977799********************************* PP

        XAP5 177 nkargksg.pLFdvsedvrekk............................seekisdlegekddshatKvvdrrWYernKHifPasrWeefdpekdyek 246
                 n   g++g +LF++s++++ kk                            +  +i++leg  d++  tKvvdrrWY+rnKHi+Pas+W+efdpe+dy++
  CCE29050.1 287 NECYGPEGrRLFEFSAEAPLKKqgaeseseptriktgqlstaatraaaakNLVDINTLEGVADEPVRTKVVDRRWYDRNKHIYPASTWQEFDPEMDYTS 385
                 *******************8889*************************998999*******************************************99 PP

        XAP5 247 ev 248
                 ev
  CCE29050.1 386 EV 387
                 87 PP

>> Herpes_TAF50  Herpesvirus transcription activation factor (transactivator)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   4.6   2.7e-05     0.045     318     402 ..      46     129 ..       2     206 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.7e-05
  Herpes_TAF50 318 fqvtevvsllqsatspsstpaPstavraavvqlepevplkAtakqkaqqrpegsgeekptflpqvggkddaqGlsvsdstsfata 402
                    ++ e    + s+  +sst++P++a   +      ++plk + +q+++q+++  g+++  f+      dd++G  +s+s+s +  
    CCE29050.1  46 REAREAAISGTSTPDASSTSTPDNAGSDTAGGAGARRPLKRSKQQQLKQKQKKTGKKLLSFHDDDDDDDDDNG-DDSKSGSRKKE 129
                   55556666678888899********************************************************.88888886654 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  15.5   0.00011      0.18     334     422 ..      85     170 ..      32     206 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
                  XXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX...XXXXXXXXXXXXXX..XX CS
  TFIIF_alpha 334 skkkkkakklkkkkkekdkkdSddeedsddsDideedsvslvkakKkkekkkeekvdsnessagnsrparp...speqkdskskrkaasees 422
                  +++k+++ k+k+kk +k k  S  ++d+dd+D++++ds s    ++kke+  +   +sn++s ++s  ++p   + + k+s  k ka+  + 
   CCE29050.1  85 KRSKQQQLKQKQKKTGK-KLLSFHDDDDDDDDDNGDDSKS---GSRKKEEGGD--SGSNNGSITKSTTESPageTETRKSSHPKVKANAAVG 170
                  34444444545555555.4556566666666666666655...2333332333..3344444444444444111333344444555543333 PP

>> DFRP_C  DRG Family Regulatory Proteins, Tma46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.6   2.6e+03      40      57 ..      40      56 ..      19      74 .. 0.63
   2 ?    9.8   4.5   0.00065       1.1      39      78 ..      86     122 ..      80     131 .. 0.67
   3 ?    0.3   0.0      0.64     1e+03      55      77 ..     293     315 ..     287     327 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.6
      DFRP_C 40 aeeekeekkkkkeglsGr 57
                  e++e++++++  +sG 
  CCE29050.1 40 VLEQQEREAREA-AISGT 56
                223333444444.66765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00065
      DFRP_C  39 eaeeekeekkkkkeglsGrelfefnpelaedddeeeeeee 78 
                   ++++ ++k+kk   +G++l++f+++  +ddd++ ++++
  CCE29050.1  86 RSKQQQLKQKQKK---TGKKLLSFHDDDDDDDDDNGDDSK 122
                 3333333444444...9*******9998888888877664 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.64
      DFRP_C  55 sGrelfefnpelaedddeeeeee 77 
                  Gr lfef+ e   +++ +e+e+
  CCE29050.1 293 EGRRLFEFSAEAPLKKQGAESES 315
                 69****99998877776666655 PP

>> UPF0560  Uncharacterised protein family UPF0560
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.8     0.001       1.7     718     813 ..      38     130 ..       3     132 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.001
     UPF0560 718 lvyvddleesssesrtavcspednsltplldekae.krgetlprkgrsrgnssrseespseserdsltspeddsededdaedDqeenkKsPWqkrEe 813
                   ++++ e+++ e+  + +s  d s+t++ d++ + + g +  r+  +r+++++ ++++ ++ ++ l s +dd++   d++dD++++ Ks   k+Ee
  CCE29050.1  38 AEVLEQQEREAREAAISGTSTPDASSTSTPDNAGSdTAGGAGARRPLKRSKQQQLKQKQKKTGKK-LLSFHDDDD---DDDDDNGDDSKSGSRKKEE 130
                 45677778888888877777777777778877544377777777776666666665555544444.555555443...4457888889999999998 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.2    0.0027       4.4       6      60 ..      81     129 ..      78     142 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0027
     PBP1_TM   6 RePiGRkGkkakakparkkasrrrrr.dddyddeyddeedDdddddeeeevprkgk 60 
                 R P+ R  ++ + k+++kk+ ++     dd dd      dDdd+ d+++  +rk +
  CCE29050.1  81 RRPLKRSKQQ-QLKQKQKKTGKKLLSfHDDDDD------DDDDNGDDSKSGSRKKE 129
                 6666555444.4565666666655443333233......55566666666677633 PP

>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   8.3    0.0013       2.2      90     191 ..      54     154 ..      30     203 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0013
        ORC6  90 satstPskspsspstdpkslrkqlfsTPtKsktlktalsa....sksssplkrrrklaneedgeeeeed.apswvstsirdsrpeisrtlspskslgde 183
                 s tstP  s +s+   p +  + + +++  +++lk++ ++     ++++ +k    l + +d+++++ d + +  s s ++++ ++s  ++ s++ +  
  CCE29050.1  54 SGTSTPDASSTST---PDNAGSDTAGGAGARRPLKRSKQQqlkqKQKKTGKK---LLSFHDDDDDDDDDnGDDSKSGSRKKEEGGDSGSNNGSITKSTT 146
                 6677776666666...444445555556666666666555322133333333...34455555555444444444445555555555555555554444 PP

        ORC6 184 silfndss 191
                 ++++ + +
  CCE29050.1 147 ESPAGETE 154
                 44444433 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.8    0.0012         2     623     676 ..      90     144 ..      89     191 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0012
  DNA_pol_phi 623 dvLearenkegqaelfedededeeddeeeeeeddeededse.edddeeesdedee 676
                  ++L+++++k g++ l   +d+d++dd++ +++++ + +++e  d+ +++++  ++
   CCE29050.1  90 QQLKQKQKKTGKKLLSFHDDDDDDDDDNGDDSKSGSRKKEEgGDSGSNNGSITKS 144
                  58999***99999998666666666666666666666666643333333322222 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.27   4.4e+02     111     138 ..      36      64 ..       8      69 .. 0.71
   2 ?    7.2   4.6    0.0022       3.6      55      92 ..      90     130 ..      79     166 .. 0.50

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.27
      FAM176 111 erAqRlEeReriirE..IWrngqpdigsgt 138
                  rA+ lE+ er  rE  I  ++ pd+ s+t
  CCE29050.1  36 RRAEVLEQQEREAREaaISGTSTPDA-SST 64 
                 58999999999999933444556777.443 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0022
      FAM176  55 kkkkkklkeeseka.......sededeeeeeeeedsseseaeeel 92 
                 ++  k+++++   +       ++d+d++++++ +ds++ + ++e 
  CCE29050.1  90 QQL-KQKQKK---TgkkllsfHDDDDDDDDDNGDDSKSGSRKKEE 130
                 111.111122...12235665444444444444444433333333 PP

>> TT_ORF2  TT viral ORF2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   7.5     0.006       9.7      48     104 ..      75     129 ..      57     139 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.006
     TT_ORF2  48 pqgkrpkrklilrqspalpaakeekkklakwlettgedaetgpseegdgttgdaede 104
                   g +++r+  l++s++ ++++++kk+ +k l+  ++d ++  ++++d++ g+ ++e
  CCE29050.1  75 AGGAGARRP--LKRSKQQQLKQKQKKTGKKLLSFHDDDDDDDDDNGDDSKSGSRKKE 129
                 455555555..4555555568888888888888888888887788888888877544 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  10.1    0.0046       7.5     124     196 ..      90     177 ..      35     208 .. 0.54

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0046
       CDC45 124 ealeeeeesdeede......eeeeeddddeeeeeeeeedeedeeedeeeskkkrk.sksdeeee...sddddersrkrrrse..........p 196
                 ++l+++++++   +      +++++dddd+++++++ +++++e  d  + +++ + +ks +e +   +++++++s+ + + +          +
  CCE29050.1  90 QQLKQKQKKTG--KkllsfhDDDDDDDDDNGDDSKSGSRKKEEGGD--SGSNNGSiTKSTTE-SpagETETRKSSHPKVKANaavgvipravT 177
                 33333333332..123544222333333333333333222222222..22222222222222.223344444444444444455776655542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1172  (0.065369); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 2694.41
//
Query:       CCE29051.1  [L=162]
Description: uncharacterized protein CPUR_02742 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1207.92
//
Query:       CCE29052.1  [L=481]
Description: uncharacterized protein CPUR_02743 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-57  195.6   0.0      4e-31  108.5   0.0    2.1  2  Methyltransf_10  RNA methyltransferase
  ------ inclusion threshold ------
      0.044   13.2   0.0       0.08   12.3   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.0   4.4e-35     4e-31      12     135 ..      14     132 ..       3     143 .. 0.88
   2 !   85.1   0.0   5.8e-28   5.2e-24     128     298 ..     147     308 ..     135     309 .. 0.91

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 4.4e-35
                      TTTTSXXHHHHHHHXHHHHTTXEEXTTSXEES-TTSHHHHHHHHHHHHHHHH----.---TTS----HHHHHHHHHHHHHHHTGGGSGTTS.-- CS
  Methyltransf_10  12 rhkdkydfaalikvvPelkqfvilnpkGrvsidfadPlavkalnkallrefygvsewdiPdgfliPpvPgradyihyvadllgkadsdisa.qv 104
                       +    df +l++  P++   v    kGr  +df+dP++v  l+k+llr ++g+++  +Pd++l+PpvP r +y+ +++dll  ++ d +  ++
       CCE29052.1  14 LYARPTDFKELARLDPDFAAVV----KGR-DLDFRDPKSVMQLTKTLLRLDFGIKI-HLPDDRLCPPVPNRHNYMIWLKDLLDTSSYDEPGqKR 101
                      3444459**********98876....576.69************************.9***************************999887477 PP

                      EEEEES-TTTTHHHHHHHHHH--EEEEEES- CS
  Methyltransf_10 105 raldiGvGanCiyPllGvteyGWrfvgsevd 135
                       +ldiG+Ga+CiyPllG  +  W+f+++ + 
       CCE29052.1 102 TGLDIGTGASCIYPLLGCAQRPWSFIATGTA 132
                      79*************************9775 PP

  == domain 2  score: 85.1 bits;  conditional E-value: 5.8e-28
                      EEEEEES-HHHHHHHHHHHHHT.T-TTTEEEE.E--TT-SCCHHSSTTSS-EEEEEE-S---SS------------...---.....------- CS
  Methyltransf_10 128 rfvgsevddvslasakaivesnsklsdaiklr.kqkekkaifdglieenerydvtlCnPPfhaslaeakagserklknlgkanktralpslnfg 220
                      +f+g+++d+ sl+ a+ +++ n +ls+ i++  + +++  i     +     d+t+ nPPf++s +e  ++++ k+    +      +p+   +
       CCE29052.1 147 TFLGADTDPSSLEWAQSNIKLN-DLSHRIHILpRHPDSPLIPLNEPGLPPTIDFTMTNPPFYSSEEEMLQSAQNKH----R------PPHTACT 229
                      79********************.999999975389999999877888889*****************999998887....4......467789* PP

                      --TTTSHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEEEEETTEE.EEEEEEES- CS
  Methyltransf_10 221 GqkaelyceGGevafikklieeskqlakqvlWfttlvskkenlaplkeelkklGaskvtvvelaqGqkl.srfiaWsfl 298
                      G ++e++++GGe+af++++ +es   ++++ W+t++ +  ++l+++ e l+   +++  v+e++qG+k  ++++ Wsf+
       CCE29052.1 230 GSTSEMVTPGGELAFVQRIFTESLVSREHIQWYTAMFGFLSSLTAFIETLHAEKVQNYAVTEFVQGNKTrRWAVGWSFQ 308
                      ******************************************************************8862689*****7 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.9e-06      0.08     167     215 ..     128     176 ..     100     185 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.9e-06
        PrmA 167 DvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklev 215
                   Gt      + ++ L   + ++ D+D+ +++ a++N++lN++++++++
  CCE29052.1 128 ATGTAETFPCLDSMTLLLLTFLGADTDPSSLEWAQSNIKLNDLSHRIHI 176
                 5555555555566666667789***********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3403.77
//
Query:       CCE29053.1  [L=278]
Description: uncharacterized protein CPUR_02744 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        0.1   11.3   0.0       0.13   10.9   0.0    1.1  1  Glt_symporter  Sodium/glutamate symporter


Domain annotation for each model (and alignments):
>> Glt_symporter  Sodium/glutamate symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.4e-06      0.13      69     121 ..     192     245 ..     140     251 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.4e-06
  Glt_symporter  69 lmlaffttiGLsanlkllkkG.GkvllvfllvvailiviqnlvGvslasllgld 121
                       af  + GL + +++ + G G+   + ++v a+l v+qn v + +a +l+  
     CCE29053.1 192 TEYAFRRSKGLLSGIRRAILGgGAFAKIAMFVFAVLYVFQNEVTIRVARTLNKR 245
                    4567888889988888766651566779999999*****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2130.26
//
Query:       CCE29054.1  [L=853]
Description: uncharacterized protein CPUR_02745 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-29  102.2   0.0    2.4e-27   96.1   0.0    2.5  1  DUF4139   Domain of unknown function (DUF4139)
    6.7e-27   93.8   0.0    6.7e-27   93.8   0.0    3.2  3  DUF4140   N-terminal domain of unknown function (DUF4140)
  ------ inclusion threshold ------
      0.026   14.3   0.8      0.044   13.5   0.8    1.3  1  YfiO      Outer membrane lipoprotein
       0.09   12.6   1.1       0.16   11.8   0.2    1.9  2  AbiGi     Putative abortive phage resistance protein AbiGi, a


Domain annotation for each model (and alignments):
>> DUF4139  Domain of unknown function (DUF4139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.0   5.2e-31   2.4e-27       2     207 ..     314     847 ..     313     848 .. 0.92

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 5.2e-31
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx........................ RF
     DUF4139   2 kvsyvvseagWsPlYdlrldtakeevqltykAkvyQktgeDWknvnLtLstakpnrg...gsppelspwylrvvn........................ 73 
                  +syv+s+a W P+Ydl+l t++++ +l++ A++++ t e W+n +++Lst++ + +    + p+l+pwy+++v+                        
  CCE29054.1 314 VLSYVTSAAYWVPSYDLQLWTTTATGTLSFDAELHNWTSETWTNSKVVLSTSQATFSgldDAIPTLEPWYVSLVQgpppyghgrvleeiarsgdevrna 412
                 68***************************************************9988333568************************************ PP

                 ................................................................................................... RF
     DUF4139  74 ................................................................................................... 73 
                                                                                                                    
  CCE29054.1 413 kealerqkldrahnksrgdmfgvqeeegrllsrrrggrsvgrekdldgrcvryaaelmplaattqtlaapisasdtghdgggaattteavarsnlpgap 511
                 *************************************************************************************************** PP

                 ...........................................................................................xxxxxxxx RF
     DUF4139  74 ...........................................................................................evteggts 81 
                                                                                                             ++e g++
  CCE29054.1 512 tmrssrlsglsglfgassqpapnvtafgnaapprsgavapspntramlrgvhptekqplpsrqsheptsysnnpdeddsdnsssssssvesIMSETGLT 610
                 *****************************************************************************************9977899*** PP

                 xxxxxxxxxxxxxxxxxxxxx.....................................................................xxxxxxxxx RF
     DUF4139  82 vtfeipkkvsipsdgeetkvt.....................................................................Gvdpkikve 111
                 +t+++p ++++p ++++tk                                                                       G dp+i+v+
  CCE29054.1 611 STYHLPSPKTLPPKTTPTKHRvahirftnitythtvipkhnpvaylkakfkntskttlfkgrtalrldgsfmgrttlprcsagetfvlslGIDPAIQVT 709
                 *************9998888888***************************************************************************9 PP

                 xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx..............xxxxxxxxxxxxx........................x RF
     DUF4139 112 rk..llkkkksetgligsqrrveyaytitvkNtksepv..tlkvedq..............vPvSrdeeikvel........................e 168
                 +   + ++++ ++gl+++++   ++  it++Nt+  ++    +v+                vP+S+de+++v++                         
  CCE29054.1 710 YPrpVIQRARTSAGLFSKENSAVFTRCITLHNTRAAGAgaGATVTTTaatmkatsvivldqVPLSQDEKLRVDIltplglsvggaevrtgtagleageN 808
                 7511556666669***999999999999998887643211112222222444444444444************9*********************9975 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     DUF4139 169 daepskaevdkdtgilewklklapgekkkiefsyevkyp 207
                 ++  s +++ +++g++ w+++l +g+  +++++y v +p
  CCE29054.1 809 TDWGSARASLRRDGEVLWDVSLNAGKAVRLTLEYGVAFP 847
                 5555666777888**********************9998 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   1.5e-30   6.7e-27       1      98 []      19     145 ..      19     145 .. 0.99
   2 ?   -0.4   3.1      0.35   1.6e+03      66      87 ..     205     227 ..     158     248 .. 0.62
   3 ?   -3.2   0.3       2.7   1.2e+04      68      80 ..     407     419 ..     397     428 .. 0.50

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 1.5e-30
     DUF4140   1 VtvypdrAevtreikv.elkaGtnevtiegLpptldedSlrVegagaatildvqvervpnreaeee............................elkal 70 
                 Vt++p+rA+++r+ik+ +l++Gtne++i+gL+p++d+dS++Ve   a+ti+dv++e  pnr+++ee                            elk++
  CCE29054.1  19 VTLFPSRAQIHRDIKNiPLQPGTNEIIIQGLSPSVDQDSIKVEVGPAFTISDVSIEALPNRDIFEEihpeldsddtegdeddddldftpwkegsELKHA 117
                 9***************99**************************99***********************************************99**** PP

     DUF4140  71 raeleeledelaaledelaaaearlafl 98 
                 +++l++l+d+++ ++++ ++ae+rl++l
  CCE29054.1 118 KQQLDSLHDARTLADEAVSSAESRLKLL 145
                 *************************987 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.35
     DUF4140  66 e.lkalraeleeledelaalede 87 
                 +  +++ra+ e+l++++++++++
  CCE29054.1 205 KlDDKARAKAEKLQEKIQKAKEK 227
                 22344455555555555554444 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.7
     DUF4140  68 kalraeleelede 80 
                 +++r++ e+le++
  CCE29054.1 407 DEVRNAKEALERQ 419
                 3334444444433 PP

>> YfiO  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.8   9.8e-06     0.044      20     104 ..     113     205 ..     109     229 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.8e-06
                 -HHHHHHHHHHHHHH...STTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SSSTTHHHHHHHHHHHHHHHHSHSC.....TTTS-TH CS
        YfiO  20 dyaeAikklealdsr...yPfspyaeqaqldliyAyykdadyaealasaerFlrlyPthknvdyvlYlrglsalaqarell.....rskrdpe 104
                 + ++A+++l++l++          +++++l+l + y k+ d  +    ae+ l++y + ++  y  Y++gl++  ++ + +     +++r ++
  CCE29054.1 113 ELKHAKQQLDSLHDArtlADEAVSSAESRLKLLDTYSKTWDRKKGPSIAEESLQTYKEQRSRVYGDYMAGLAQQRAVSDKMedqinEVHRLQK 205
                 66788888888765533234455678999******************************************9888887777666663333333 PP

>> AbiGi  Putative abortive phage resistance protein AbiGi, antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   3.7e-05      0.16      74     159 ..     110     198 ..     107     211 .. 0.81
   2 ?   -3.4   0.0       1.6   7.3e+03      63      73 ..     648     661 ..     643     670 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.7e-05
       AbiGi  74 dtkllkalleslkdledvlefkesehsklesslelfliyiktfdkse.......nksfylerEWRlvpnllsilgekvteeevtkkkfedken 159
                 +++ lk   ++l +l+d ++++ +  s  es l+l+  y+kt+d ++         ++y+e+  R+ ++   ++g  ++++   ++k+ed+ n
  CCE29054.1 110 EGSELKHAKQQLDSLHDARTLADEAVSSAESRLKLLDTYSKTWDRKKgpsiaeeSLQTYKEQRSRVYGDY--MAG--LAQQRAVSDKMEDQIN 198
                 567888999*************************************999999777778888777777776..555..6677777777766655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.6
       AbiGi  63 kglnPVlY...tle 73 
                  + nPV Y     +
  CCE29054.1 648 PKHNPVAYlkaKFK 661
                 6889****443233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2006  (0.111886); expected 358.6 (0.02)
Passed bias filter:                      783  (0.0436723); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.49
# Mc/sec: 5191.67
//
Query:       CCE29055.1  [L=740]
Description: related to general repressor of transcription [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-10   39.4   0.0    5.4e-10   38.7   0.0    1.2  1  Fungal_trans  Fungal specific transcription factor domain
    3.5e-05   23.8   8.2    7.6e-05   22.8   8.2    1.6  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0     6e-14   5.4e-10      14     205 ..     134     310 ..     126     333 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 6e-14
  Fungal_trans  14 ilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdr 110
                    +hkpsf  +       k+a+ ++ l+   l  +a++s+   ++  s++         ++ +a+++ + + +   +sl  +q+L l+ + e +s + 
    CCE29055.1 134 AFHKPSFVQHL------KKASLNSSLVSGLLTCAARSSPVLIRRYGSPTLAAE-----TF-AAKTIVLVNQNLDQPSLSDIQALCLVVIHEWGSRNA 218
                   58999999999......888999999988888888888888888766666633.....22.44444446777777789*****99999999999999 PP

  Fungal_trans 111 alherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpp.llddsqinlpLPcddddlwesddaseetlve 205
                     ++ ++g a r+ +    +++ ++ +       ++  +es+rR+ w +++lD+++ +  Gr + l   +  ++pLPc d ++ +++ +s  tl+e
    CCE29055.1 219 VRAYIYLGQAARMLHMYQVSGECNNPN---MG-NQFLRQESLRRTLWLVYILDCLLTTTSGRFTaLGTQDIATVPLPCLDINFAFANPVSVNTLPE 310
                   99999*******************999...44.55555**************************99999999*********999999988888887 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   8.2   8.5e-09   7.6e-05       2      34 ..      17      50 ..      16      56 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 8.5e-09
                S-HHHHHCT---ST...SSSS-HHHHHCTHHHCCCC CS
     Zn_clus  2 aCdnCrkkKvKCda...kkPaCsnCkklnleCtfys 34
                aC +Crk+K++C +   + P C+nC k   +C   +
  CCE29055.1 17 ACVRCRKGKTRCVYengQLP-CKNCSKGMHDCY-LP 50
                9***********99555556.******999998.43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 5133.35
//
Query:       CCE29056.1  [L=518]
Description: related to carboxylic acid transporter protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-39  135.4  15.0    4.2e-39  134.7  15.0    1.2  1  Sugar_tr  Sugar (and other) transporter
      4e-34  118.1  41.0    1.1e-30  106.8  28.1    1.8  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7  15.0   4.6e-43   4.2e-39      14     446 ..      55     468 ..      51     472 .. 0.88

  Alignments for each domain:
  == domain 1  score: 134.7 bits;  conditional E-value: 4.6e-43
                 HHHHCGGGTHHHHHHHHTSTT--SHHHHHH.......HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGG CS
    Sugar_tr  14 Ydtgvigafltllkfaknfglsksksskee....ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivg 108
                 + ++ ++++++  + + +f++s ++s+ ++    +  ++++   ++l  + +Gs+++g+++dr+GR++ +++  vlf++  + +a+++   ++ +++++
  CCE29056.1  55 WAFFSLAFAAWTWDSFDFFTVSLTVSDLAKdfgkTPADITWGITLVLMFRSVGSIIFGIASDRWGRRWPFVANQVLFIVLELGTAFCQ---TYSQFLAC 150
                 5566677788888888899999999988889998666677777777888***************************************...9******* PP

                 HHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHH CS
    Sugar_tr 109 RvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPESPrylvekgkeee 206
                 R l G+++G+ ++ +   + E  p++ Rg + ++ q +++fG l+ a f  gl n+ts+  +wr l ++++ p+ +++ ++l+lPE++ +l  +g ++e
  CCE29056.1 151 RALFGVAMGGLYGNAAAMALEDVPDEARGLMSGILQQGYAFGYLLCAAFARGLvNTTSY--TWRPLYWFAACPPAVFIGIRLMLPETKVFLERQGMRQE 247
                 *****************************************************888888..9************************************* PP

                 HHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHH CS
    Sugar_tr 207 akevlaklrgeedadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatf 305
                 a  v +        +  l e k++l++            +        l++ v+l+++ ++  + ++  y++++ ++l +sk+ +vt+  +v n  a  
  CCE29056.1 248 AGHVGKS-----AGSVFLSEGKTALKHH-----------WLL------LIYLVLLMAGFNFLSHGSQDLYPTMLENQLQFSKT-EVTVTQVVSNLGAMS 323
                 ****999.....9999************...........777......88999999***************************.999999999988888 PP

                 HHH...HHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTT.TTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHH CS
    Sugar_tr 306 vai...flvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalg.wgpvpwvlvsElfpqsvRskalaiavavnwlanf 400
                  +i   f++  +GRR   +++++ +          all++ +    ++ +i++ a+f  +f  g wg +p +++ El+p  +R+++   a+++ +l++ 
  CCE29056.1 324 GGIivgFCSQSVGRRFSIVVCCILGG---------ALLYPYGF--LNNNSIMAAAFFEQFFVQGaWGVIP-IHLMELSPGTFRTFVVGTAYQLGNLVSS 410
                 886678*********54444444444.........44444442..4444555666665555555166666.999************************* PP

                 HHHHHHHHHHCHHH............T-HHHHHHHHHHHHHHHHHHHHS--STT--CC CS
    Sugar_tr 401 lisllfpiiteaig............ggyvflvfaglavlfiifvfffvpetkgrtle 446
                 + s++  ++ e+               g+v  +f +++++++++  +  pe +gr+++
  CCE29056.1 411 ASSTIEAQLGEQFPlpptengtprydYGKVICIFLVCVYVYTLVLTLLGPEHVGRKFD 468
                 ********************99999999999999999999999999999999999985 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8  28.1   1.2e-34   1.1e-30      14     350 ..      69     410 ..      55     415 .. 0.75
   2 !   25.4   5.0   6.7e-10     6e-06      20     139 ..     296     414 ..     291     477 .. 0.76

  Alignments for each domain:
  == domain 1  score: 106.8 bits;  conditional E-value: 1.2e-34
       MFS_1  14 i...lgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaa 108
                     ++++l+   la+d+g +p+ i + +tl+  + +v+s+++G  sdr+Grr+ +++  +lf++  l  +f++++  +l++r+l G+++g+l+ ++aa
  CCE29056.1  69 SfdfFTVSLTVsDLAKDFGKTPADITWGITLVLMFRSVGSIIFGIASDRWGRRWPFVANQVLFIVLELGTAFCQTYSQFLACRALFGVAMGGLYGNAAA 167
                 355555555555******************************************************888889888889********************* PP

       MFS_1 109 liadwfpkeergraigllsagfslGailgpllgglla..sslgWravfyilaivsllafvlfllllpeepperkrkspkeee....kgtgpaplvpawk 201
                 ++ + +p+e rg++ g+l+ g+++G++l ++++  l+  +s+ Wr +++++a   ++++  + l lpe+++  +r+  ++e     k+ g   l++  k
  CCE29056.1 168 MALEDVPDEARGLMSGILQQGYAFGYLLCAAFARGLVntTSYTWRPLYWFAACPPAVFIG-IRLMLPETKVFLERQGMRQEAghvgKSAGSVFLSE-GK 264
                 *****************************99999999556666***********999855.46888899999999988888555444444444444.55 PP

       MFS_1 202 allkdpvlwillialllfffgfsg....lltllplylqevlgls....glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgla 292
                   lk+   w+lli l+l ++gf++       l p++l  +l +s    +     ++  ++ l+++ +++++g+ s+ +gr   ++ ++++++l+ ++l+
  CCE29056.1 265 TALKHH--WLLLIYLVLLMAGFNFlshgSQDLYPTMLENQLQFSktevT-----VTQVVSNLGAMSGGIIVGFCSQSVGR---RFSIVVCCILGGALLY 353
                 555555..7566666666566666678899999***********54443.....4455555555555**********887...5555555566666666 PP

       MFS_1 293 llavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslgga 350
                 + ++  ++  ++++ ++  f++  +++ +   +++l p   + +++g +  +g+l+++
  CCE29056.1 354 PYGFL-NNNSIMAAAFFEQFFVQGAWGVIPIHLMELSPGTFRTFVVGTAYQLGNLVSS 410
                 66666.4445555666666655556777777777777766666666666655555443 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 6.7e-10
       MFS_1  20 plalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll.fasslwlllvlrvlqGlgagalfpagaaliadwfpk 116
                 p +l ++l++s++e+    ++  lga+ + +++G+ s+ +Grr  ++++++l+ al   ++  f ++   ++++ ++  ++  +++ ++ + + +++p+
  CCE29056.1 296 PTMLENQLQFSKTEVTVTQVVSNLGAMSGGIIVGFCSQSVGRRFsIVVCCILGGALL--YPYgFLNNN-SIMAAAFFEQFFVQGAWGVIPIHLMELSPG 391
                 55788999************************************7777777777777..444464444.49**************************** PP

       MFS_1 117 eergraigllsagfslGailgpl 139
                 + r++++g ++   +l +     
  CCE29056.1 392 TFRTFVVGTAYQLGNLVSSASST 414
                 99999997655555444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3617.83
//
Query:       CCE29057.1  [L=413]
Description: uncharacterized protein CPUR_02748 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-18   67.2   0.0    1.8e-17   63.5   0.0    2.0  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    5.8e-05   22.3   1.3      0.096   11.7   0.3    2.3  2  GIDA            Glucose inhibited division protein A
    0.00014   21.1   0.4     0.0011   18.2   0.3    2.3  3  FAD_binding_2   FAD binding domain
    0.00019   20.8   0.1     0.0062   15.8   0.0    2.6  3  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
     0.0002   20.7   0.1     0.0028   16.9   0.0    2.1  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    0.00021   21.0   0.6     0.0029   17.2   0.3    2.2  2  DAO             FAD dependent oxidoreductase
    0.00049   20.1   0.2       0.64   10.0   0.1    3.1  3  NAD_binding_9   FAD-NAD(P)-binding
    0.00052   20.2   0.2     0.0012   19.1   0.2    1.6  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0015   17.3   0.1     0.0039   16.0   0.1    1.7  2  HI0933_like     HI0933-like protein
     0.0048   17.3   0.0     0.0096   16.3   0.0    1.4  1  PrlF_antitoxin  prlF antitoxin for toxin YhaV_toxin
  ------ inclusion threshold ------
      0.022   13.8   0.3      0.066   12.3   0.4    1.6  2  Lycopene_cycl   Lycopene cyclase protein
      0.028   13.8   0.7      0.068   12.5   0.5    1.7  2  FAD_oxidored    FAD dependent oxidoreductase
      0.033   14.3   0.0      0.073   13.2   0.0    1.5  1  zinc_ribbon_13  Nucleic-acid-binding protein containing Zn-ri
      0.054   12.7   0.0      0.087   12.0   0.0    1.3  1  FAD_binding_3   FAD binding domain
      0.065   12.5   0.0       0.43    9.8   0.0    1.9  2  Thi4            Thi4 family


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   1.5e-20   1.8e-17       1     291 [.      32     341 ..      32     344 .. 0.82

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 1.5e-20
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.....HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias.....evvkklnqgielllgeevvkidpgkkkvklekkke. 92 
                  +d +++GgGpAGlaa   la+   +v+lv + g+  n     ++ +lg+ + +         ++++++ + +++ +g ++ ki p++ +   +  ++ 
   CCE29057.1  32 YDAIIVGGGPAGLAALSALARVRRNVLLV-DSGEYRNAATRHQHDVLGYDGVTPAYYkwfarKQLSNYDT-VTMTNG-TISKILPQQNNTYFT--VSg 124
                  5789*************************.8888889999999999999999876668998766555554.344444.688998888444332..222 PP

                  ....TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-E.EEEEESSSSSS.TTS-HH CS
                  ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxx RF
  Pyr_redox_2  93 ....gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgke.vtlveardrll.raldke 184
                      ++e ++++ k+vlAtG +  ++++pGv en+g+++  ++ +++ +++ +   +   G   +   +  +  +++ + +  v   d+   ra  ++
   CCE29057.1 125 typdNKEITFTARKIVLATGLRDLLPDTPGVRENWGQGLYWCMWCDGHEHADQA--LGLLGPLTTVPGTVREVLSVNTDvIAFVNGTDTEAnRAATEK 220
                  466688899999**************************************9999..888883333333444478888885667888888889****** PP

                  HHHHHHHHHHHTTEEEEESCEEEEEEETTE................EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTS. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Pyr_redox_2 185 lsaaleealekeGvevklgtsvkeidgnge................kle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdefl. 264
                     + +++l+ ++++v  + ++ +i++  +                +l  v  ++ge i  d  +++   +  ++l   ++g+++  ++++  d++  
   CCE29057.1 221 SDPRWQDYLKLHNIQVE-NRTIAAIERLRDgslppgdpslpthaehDLFrVRFTEGEPILRDSFLTSYKEEQHSSLG-VDMGVKM-LGNKLTADQSKg 315
                  *****************.777779999888899********98865333799****************888887775.*******.788887776644 PP

                  .BESSTTEEE-GGGCTECCSS--HHHHH CS
                  .xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 265 .rtnvpgiyaiGDvaggkggpelaqaAv 291
                    tnvpg+yaiGD+    +++ ++++A 
   CCE29057.1 316 lMTNVPGVYAIGDCN--SDNVTNVPHAL 341
                  58*************..89999999886 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.3     8e-05     0.096       1      29 [.      33      70 ..      33      85 .. 0.81
   2 !    9.4   0.0   0.00043      0.51      97     149 ..      87     144 ..      79     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE.........E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi.........t 29
                d i++GgG AG++A  a+ar   +vlL+         t
  CCE29057.1 33 DAIIVGGGPAGLAALSALARVRRNVLLVdsgeyrnaaT 70
                579************************97666655551 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00043
                 HHHHHHHHHHTSTTEEEEES-EEEEEECT....TEEEEEEETT.S-EEEECEEEE--T CS
        GIDA  97 yskevteklenepnleiieeeveelivee....kkvkgvvted.getikakavviatG 149
                 y+   +++l+n++ +++ +++++++++++     +v+g + ++ + t++a+++v+atG
  CCE29057.1  87 YKWFARKQLSNYDTVTMTNGTISKILPQQnntyFTVSGTYPDNkEITFTARKIVLATG 144
                 7777899********************997766678887765515678999******9 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   8.9e-07    0.0011       1      38 [.      33      70 ..      33      72 .. 0.93
   2 ?   -2.7   0.0         2   2.4e+03     184     200 ..     128     144 ..     107     157 .. 0.82
   3 ?   -0.4   0.0       0.4   4.8e+02     390     402 ..     318     330 ..     309     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.9e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38
                   D+i++G+G AGLaA  ++a+  ++v++v+ +++++ at
     CCE29057.1 33 DAIIVGGGPAGLAALSALARVRRNVLLVDSGEYRNAAT 70
                   89******************************988765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2
                    TTCEEEEEESEEEE--- CS
  FAD_binding_2 184 sgrevrirakavvlatg 200
                    + +e +++a+++vlatg
     CCE29057.1 128 DNKEITFTARKIVLATG 144
                    45677899*******99 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.4
                    ESSBTEEE-STCE CS
  FAD_binding_2 390 qpipGLYAaGeva 402
                    +++pG YA+G + 
     CCE29057.1 318 TNVPGVYAIGDCN 330
                    689*******986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.2e-06    0.0062       1      38 [.      35      71 ..      35      76 .. 0.89
   2 ?    1.7   0.0       0.1   1.2e+02      99     134 ..     103     145 ..      83     157 .. 0.66
   3 ?   -1.4   0.0      0.91   1.1e+03     292     305 .]     314     327 ..     274     327 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.2e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnignsiyr 38
                 iI+G+GPaGlaa  +l ++   ++l ++ g+  n+ +r
   CCE29057.1 35 IIVGGGPAGLAALSALARVRR-NVLLVDSGEYRNAATR 71
                 8*******************9.89*****998887665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.1
  Pyr_redox_3  99 klfeeVesvkk..edegfevets....ke.tyeAkkviiAtGe 134
                  +++ ++ ++ +  +++ f+v+ +    ke t++A+k+++AtG 
   CCE29057.1 103 MTNGTISKILPqqNNTYFTVSGTypdnKEiTFTARKIVLATGL 145
                  556666666663245568887541111346999********95 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.91
  Pyr_redox_3 292 eteetnvpglflaG 305
                  +   tnvpg++ +G
   CCE29057.1 314 KGLMTNVPGVYAIG 327
                  55679******998 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.12   1.4e+02       3      25 ..      32      54 ..      31      65 .. 0.81
   2 !   16.9   0.0   2.3e-06    0.0028     101     165 ..      86     152 ..      83     158 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.12
  K_oxygenase  3 lDligiGiGpsnLsLailleevk 25
                 +D i++G Gp+ L+   +l+ v+
   CCE29057.1 32 YDAIIVGGGPAGLAALSALARVR 54
                 89**********99888888777 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 2.3e-06
  K_oxygenase 101 YlrWvas.qleeq...vrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvGtepkiPev 165
                  Y++W a+ ql++       + ++ ++ p++++  +++tv+ + ++++e +++ar++vl++G +  +P++
   CCE29057.1  86 YYKWFARkQLSNYdtvTMTNGTISKILPQQNN--TYFTVSGTYPDNKEITFTARKIVLATGLRDLLPDT 152
                  77776642455432224456789999999976..79****999***********************985 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   2.5e-06    0.0029       1      53 [.      33      89 ..      33     100 .. 0.76
   2 ?    1.6   0.0      0.14   1.7e+02     188     207 ..     131     149 ..      99     258 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.5e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS...STHHS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl...rylpe 53
                d +i+GGG +Gl++  +Lar    V+l+++g +   +a+ +   +l       +y+++
  CCE29057.1 33 DAIIVGGGPAGLAALSALARVRrnVLLVDSG-EYRNAATRHQHDVLGYDGvtpAYYKW 89
                789***************874347*******.77779999998888443344444544 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.14
                 EEEEEEEEEEE--GGGHHHH CS
         DAO 188 gendaadavVnaaGawsdll 207
                 +++++a+++V+a+G+  dll
  CCE29057.1 131 EITFTARKIVLATGLR-DLL 149
                 45556799*****976.444 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00054      0.64       2      28 ..      36      57 ..      35      77 .. 0.78
   2 !    6.2   0.0    0.0076       9.1      98     154 ..      85     144 ..      81     146 .. 0.74
   3 ?   -0.7   0.0         1   1.2e+03      79     106 ..     361     388 ..     328     393 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00054
  NAD_binding_9  2 ivGaGprGlavlerLlarakkksplei 28
                   ivG+Gp+Gla+l +L++ +      ++
     CCE29057.1 36 IVGGGPAGLAALSALARVR-----RNV 57
                   9**************9874.....444 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0076
  NAD_binding_9  98 rYlrdlfeellarlpegvtvevhraevvdleeradgqavll......adgaslaadaVvLAlG 154
                    +Y ++++++ l+++    tv++ ++++ ++ +++++ +++       +++ +++a+++vLA+G
     CCE29057.1  85 AYYKWFARKQLSNYD---TVTMTNGTISKILPQQNNTYFTVsgtypdNKEITFTARKIVLATG 144
                    688888888777664...89*********999998864443245542333467*********9 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1
  NAD_binding_9  79 leeaeeldpddfvpRalyGrYlrdlfee 106
                      e+++ld+++ v+R+ + ++ r+l+++
     CCE29057.1 361 AAELAALDGKSSVSRRSFHEHARSLWDR 388
                    2337899999999999999999988876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   9.8e-07    0.0012       1      29 [.      36      64 ..      36      81 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 9.8e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   IvG+G +Gl+a ++La+ +++vll+++++
     CCE29057.1 36 IVGGGPAGLAALSALARVRRNVLLVDSGE 64
                   9*************************986 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   3.2e-06    0.0039       2      32 ..      33      63 ..      32      67 .. 0.91
   2 ?   -2.8   0.0       1.6   1.9e+03     149     163 ..     130     144 ..      93     145 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.2e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 d i++GgG+AGl a  ++a+  ++Vll++++
   CCE29057.1 33 DAIIVGGGPAGLAALSALARVRRNVLLVDSG 63
                 89**********999999***********87 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.6
                  TTEEEEESEEEE--- CS
  HI0933_like 149 seeeleadklvlAtG 163
                  +e +++a+k+vlAtG
   CCE29057.1 130 KEITFTARKIVLATG 144
                  455788999999998 PP

>> PrlF_antitoxin  prlF antitoxin for toxin YhaV_toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.1e-06    0.0096      10      63 ..     186     235 ..     184     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.1e-06
  PrlF_antitoxin  10 ttiPasvRkaLklkkgrdkiaytilddgkvvisraeeeaeDpvleqFLeFlakd 63 
                     tt+P +vR++L++++  d ia++   d +   +ra+ e++Dp  + +L+  + +
      CCE29057.1 186 TTVPGTVREVLSVNT--DVIAFVNGTDTE--ANRAATEKSDPRWQDYLKLHNIQ 235
                     9*************8..99***8766665..68**********99999875544 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   5.5e-05     0.066       1      36 [.      33      66 ..      33      75 .. 0.85
   2 ?   -1.7   0.0      0.93   1.1e+03      95     141 ..      93     145 ..      66     160 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.5e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   D +++G+GpAgl+    l  a+ + +v+l+++++  
     CCE29057.1 33 DAIIVGGGPAGLAALSAL--ARVRRNVLLVDSGEYR 66
                   789********9877777..9**********99865 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.93
  Lycopene_cycl  95 erlv.engvklleakvesveeeeageslv....vleggr..kirarlvvdargl 141
                    ++l   + v+++++++ ++ ++++ +++     + ++++  +  ar +v a+gl
     CCE29057.1  93 KQLSnYDTVTMTNGTISKILPQQN-NTYFtvsgTYPDNKeiTFTARKIVLATGL 145
                    555545789999999999999988.44440011344555555678888888885 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   5.7e-05     0.068       1      31 [.      33      63 ..      33      66 .. 0.91
   2 ?   -3.3   0.0       3.5   4.1e+03     130     149 ..     130     149 ..      72     161 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.7e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveer 31
                  D ++vGGgpaG+aA  a ar  ++vlLv+  
    CCE29057.1 33 DAIIVGGGPAGLAALSALARVRRNVLLVDSG 63
                  679***********9999**********976 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.5
  FAD_oxidored 130 grktirAkvfiDATgdGdla 149
                   +++t++A+ ++ ATg  dl+
    CCE29057.1 130 KEITFTARKIVLATGLRDLL 149
                   35555555555555555544 PP

>> zinc_ribbon_13  Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.1e-05     0.073      12      38 ..      98     124 ..      92     132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.1e-05
  zinc_ribbon_13  12 vkevaatGsglskifdvqnkkfitvsC 38 
                      ++v +t +++ski+  qn++++tvs 
      CCE29057.1  98 YDTVTMTNGTISKILPQQNNTYFTVSG 124
                     6899*********************85 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.3e-05     0.087       2      32 ..      32      62 ..      31      73 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.3e-05
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +d +IVG+GpaGl + + L++   +v+lv+ 
     CCE29057.1 32 YDAIIVGGGPAGLAALSALARVRRNVLLVDS 62
                   7899***********9999998566777765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00036      0.43      17      39 ..      31      53 ..      22      62 .. 0.83
   2 ?   -0.1   0.0      0.37   4.4e+02     138     185 ..      97     144 ..      94     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00036
                EEEEEEE--SHHHHHHHHHHHHC CS
        Thi4 17 esDvvivGaGssGLtaayylakk 39
                + D +ivG+G++GL+a   la+ 
  CCE29057.1 31 DYDAIIVGGGPAGLAALSALARV 53
                6799************9999986 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.37
                 EEHHHHTCTTTSS.-B-EEEEEEEEEE--GSSSTTTTHHHHHHHHCTT CS
        Thi4 138 nwtlvelahdtqscvDPlvirakvvvdatGhdgeivavvvkkikleak 185
                 n+ +v+++ +t s + P+  ++   v+ t  d + ++++++ki+l++ 
  CCE29057.1  97 NYDTVTMTNGTISKILPQQNNTYFTVSGTYPDNKEITFTARKIVLATG 144
                 78899999999999****************************998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2781.20
//
Query:       CCE29058.1  [L=303]
Description: uncharacterized protein CPUR_02749 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0086   15.7   0.2      0.016   14.8   0.2    1.4  1  ASD2      Apx/Shroom domain ASD2
  ------ inclusion threshold ------
       0.41   10.8   9.2        2.8    8.1   9.2    2.0  1  bZIP_1    bZIP transcription factor


Domain annotation for each model (and alignments):
>> ASD2  Apx/Shroom domain ASD2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   1.8e-06     0.016      91     157 ..      23      90 ..       2     114 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-06
        ASD2  91 lkdeteleekdeeeekseeeedldlkekkeeLieslskklevLke..eqealleeikanealgeeveal 157
                 + +   ++e+  +++++++e++  ++++ ++Li+sl++++++L++  + +a++e  ++n al +e+  l
  CCE29058.1  23 IASR-LSPEQLARKRANDRESQRAIRARNKDLIASLQREVHELRSrdDARAVQELLRRNGALESELRLL 90 
                 2222.2233333444566777789*******************861156899**9*****999999765 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   9.2   0.00032       2.8       6      41 ..      32      67 ..      29      95 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00032
                XXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  6 rekrkqkNReaArrsRqRKqaeieeLerrvkaLeke 41
                 +++++  Re++r+ R R +  i+ L+r+v +L + 
  CCE29058.1 32 LARKRANDRESQRAIRARNKDLIASLQREVHELRSR 67
                57999999************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2335.82
//
Query:       CCE29059.1  [L=273]
Description: related to GS1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-15   56.8   0.0    4.9e-15   56.1   0.0    1.4  1  HAD_2           Haloacid dehalogenase-like hydrolase
    1.9e-06   28.4   0.0    2.9e-05   24.5   0.0    2.0  1  Hydrolase       haloacid dehalogenase-like hydrolase
     0.0062   16.6   0.0      0.011   15.7   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   8.2e-19   4.9e-15       1     178 []      13     214 ..      13     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 8.2e-19
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee...kieellrkyneekkkkevkpydgvkelLeeL..... 91 
                 ++FD+Dg+ll+te+l+  ++n +l++y+   l+ +  +kl g +  e+ r + +  +       +++ l+ +++++     kp++gv+elL  L     
  CCE29059.1  13 CLFDVDGLLLNTEDLYTFCVNLVLQKYNRAPLPWSIKAKLQGRPAPEANRIFSDWAKLPIsdaQYKDELSAFQTNHFP-GAKPLPGVRELLSALatakt 110
                 69*************************999999999999999888877777766555544455777777888888888.************99855555 PP

       HAD_2  92 .keagyklgivTsksreaveekleqlgiesyFdvivtsedvekk.........KPdpeviekalekl.........klkkeeviyvGDsptDieaakka 171
                  k+++++++++Ts+++ ++  k ++l   ++F+v  ++  v +          KP p++++ al+            ++ ee+++++Ds+ ++ea+++a
  CCE29059.1 111 cKNEKVHMALATSSHAGNFALKTAHLP--DVFSVFPSERRVLGDdsrlgpgrgKPLPDIFLLALKTIneslgpderPITTEECLVFEDSIPGVEAGRRA 207
                 568899**************9999997..788776555444332233334666************999999999999********************** PP

       HAD_2 172 gikviav 178
                 g++v++v
  CCE29059.1 208 GMRVVWV 214
                 *****98 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   4.8e-09   2.9e-05       1     210 []      10     208 ..      10     208 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 4.8e-09
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH.HHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar.sgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgr 98 
                 +++++fD+dG L+++e   + +++ +                   l+++  a  ++++   a+        +  pe  +    +++ +  i++aq +++
  CCE29059.1  10 VRACLFDVDGLLLNTEDLYTFCVNLV-------------------LQKYNRAPlPWSI--KAK-----LQGRPAPEANRIF--SDWAKLPISDAQYKDE 80 
                 57899999999999996666666666...................4333333355555..333.....2233344433333..5555777999999999 PP

                 HHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHH......HTTEEEEEEESSEHHHHH.HHHHHTT.GGGE..SEEEEHHCES....STTTSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxx.xxxxxxx.xxxx..xxxxxxxxxx....xxxxxxxxxxxxx RF
   Hydrolase  99 tvallqaralavftiadplkvkpeaaeavasLk......aagievvlltgdnpetae.raanqlG.ddyf..daviasdiet....vakpspegkvaai 183
                  +a++       f  a p    p+++e++ +L         ++ ++l+t+++  +   ++a+  + +  f  +  + +d++      +kp+p++++ a+
  CCE29059.1  81 LSAFQ----TNHFPGAKP---LPGVRELLSALAtaktckNEKVHMALATSSHAGNFAlKTAHLPDvFSVFpsERRVLGDDSRlgpgRGKPLPDIFLLAL 172
                 99999....677777766...77777777776622233244555999999999777778888888855554444444555559999************* PP

                 HHHT.........STGGGEEEEESSHHHHHHHHHTT CS
                 xxxx.........xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 184 reLq.........gkpeevamVGDgvnDaaalaaAg 210
                 + ++         +  ee+++++D++ +++a+++Ag
  CCE29059.1 173 KTINeslgpderpITTEECLVFEDSIPGVEAGRRAG 208
                 ***999999998888*******************98 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.9e-06     0.011       3      48 ..     161     214 ..     159     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-06
                     STTSSHHHHHHHHHH.........---GGGEEEEES-TTTHHHHHHHCT-EEEEE CS
  Hydrolase_like   3 gKPepemydfalevl.........gsdpeevlmiGDrlatDiagAnnaGwksvLV 48 
                     gKP p ++  al+ +          ++ ee+l+  D+    ++++++aG++ v V
      CCE29059.1 161 GKPLPDIFLLALKTIneslgpderPITTEECLVFEDS-IPGVEAGRRAGMRVVWV 214
                     9**************6666665555559*********.***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1908.65
//
Query:       CCE29060.1  [L=325]
Description: uncharacterized protein CPUR_02751 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-06   28.3   2.3      0.004   17.4   0.1    2.6  2  TPR_12    Tetratricopeptide repeat
    4.1e-06   26.5   1.7      0.066   13.4   0.3    2.8  2  TPR_2     Tetratricopeptide repeat
    1.2e-05   24.9   2.7     0.0083   15.9   0.1    2.8  3  TPR_1     Tetratricopeptide repeat
    0.00052   20.5   2.0    0.00061   20.2   0.4    1.9  2  TPR_19    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.025   14.3   0.9      0.066   12.9   0.2    2.0  2  TPR_11    TPR repeat
       0.05   13.6   0.4        3.5    7.9   0.0    2.7  2  TPR_7     Tetratricopeptide repeat
       0.09   13.7   4.4        1.6    9.8   0.0    3.4  3  TPR_14    Tetratricopeptide repeat
       0.16   12.7   4.9         19    6.2   0.1    3.7  3  TPR_6     Tetratricopeptide repeat
       0.53   10.6   4.1        2.6    8.3   4.1    2.0  1  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.2   0.00053       1.1      45      75 ..      45      75 ..      39      77 .. 0.76
   2 !   17.4   0.1     2e-06     0.004       2      42 ..      83     123 ..      82     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00053
      TPR_12 45 attlrnLgrlyralgryeeAlelleealaia 75
                ++t  + + +++ + +ye Al+++++al  +
  CCE29060.1 45 SNTTKAEANALYSTHDYENALSRYQDALSTC 75
                5667777888888888888888888888765 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 2e-06
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhp 42 
                 +a +++n+aa++++++++ +A++    al+    l G+d++
  CCE29060.1  83 RAVVQSNMAACYLQMEQWKDAIKAATSALDGLATLEGKDKA 123
                 688999************************99999999875 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.3   3.3e-05     0.066       7      34 .]      51      78 ..      49      78 .. 0.94
   2 !   11.5   0.0   0.00013      0.25       4      28 ..      87     111 ..      84     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.3e-05
       TPR_2  7 lGlayyklgdyeeAleafekAleldPnn 34
                 ++a+y   dye Al  ++ Al+ +Pn+
  CCE29060.1 51 EANALYSTHDYENALSRYQDALSTCPNY 78
                69************************96 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00013
       TPR_2   4 lynlGlayyklgdyeeAleafekAl 28 
                   n++ +y+++ ++++A++a   Al
  CCE29060.1  87 QSNMAACYLQMEQWKDAIKAATSAL 111
                 6799****************99887 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.3   0.00092       1.8       8      34 .]      52      78 ..      50      78 .. 0.95
   2 !   15.9   0.1   4.2e-06    0.0083       3      28 ..      86     111 ..      84     112 .. 0.88
   3 ?   -3.6   0.0         6   1.2e+04      19      25 ..     234     240 ..     231     240 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00092
                HHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  8 GnayfklgkydeAleyyekALelnPnn 34
                +na+++  +y+ Al  y+ AL+ +Pn+
  CCE29060.1 52 ANALYSTHDYENALSRYQDALSTCPNY 78
                89***********************97 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 4.2e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekAL 28 
                 +  n++++y++++++++A+++   AL
  CCE29060.1  86 VQSNMAACYLQMEQWKDAIKAATSAL 111
                 678*****************988887 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 6
                 HHHHHHH CS
       TPR_1  19 eAleyye 25 
                  A+e+y+
  CCE29060.1 234 GAEEDYK 240
                 5999997 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         6   1.2e+04      33      46 ..      39      52 ..      39      52 .. 0.80
   2 !   20.2   0.4   3.1e-07   0.00061       5      47 ..      59     106 ..      55     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6
      TPR_19 33 eallalgqldeAea 46
                +all+  ++++Aea
  CCE29060.1 39 RALLEESNTTKAEA 52
                68889999999985 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 3.1e-07
      TPR_19   5 gdyaeAlalleqalqedpk.....naearllLAeallalgqldeAeal 47 
                  dy++Al++++ al+  p+      a ++ ++A ++l++ q+++A+++
  CCE29060.1  59 HDYENALSRYQDALSTCPNyllyeRAVVQSNMAACYLQMEQWKDAIKA 106
                 69*****************99966677777***************987 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   3.3e-05     0.066       2      27 ..      53      78 ..      52      88 .. 0.94
   2 ?   -1.6   0.0       1.1   2.2e+03       4      15 ..      94     105 ..      94     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.3e-05
      TPR_11  2 dayyeqGkyeeAieaYkkAlkldPdn 27
                +a+y+  +ye+A+ +Y+ Al  +P++
  CCE29060.1 53 NALYSTHDYENALSRYQDALSTCPNY 78
                99**********************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
      TPR_11   4 yyeqGkyeeAie 15 
                 y +  ++++Ai+
  CCE29060.1  94 YLQMEQWKDAIK 105
                 778899999998 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.065   1.3e+02      14      26 ..      60      72 ..      52      78 .. 0.77
   2 ?    7.9   0.0    0.0017       3.5       4      27 ..      89     113 ..      88     126 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.065
       TPR_7 14 dyeeAielyeqsL 26
                dye+A++ y+ +L
  CCE29060.1 60 DYENALSRYQDAL 72
                9999999999866 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0017
       TPR_7   4 nLarlysrlGdyeeAielyeqsL.a 27 
                 n+a +y ++ ++++Ai+  + +L +
  CCE29060.1  89 NMAACYLQMEQWKDAIKAATSALdG 113
                 9***************988876644 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0008       1.6       5      35 ..      49      79 ..      45      93 .. 0.86
   2 ?    3.4   0.1     0.088   1.8e+02       7      29 ..      90     112 ..      84     119 .. 0.88
   3 ?   -0.1   0.4       1.2   2.3e+03       3      14 ..     215     226 ..     199     240 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0008
      TPR_14  5 lalaeallalGdpdeAiallrralalaPdda 35
                +a a al+   d++ A+  +++al+++P+ +
  CCE29060.1 49 KAEANALYSTHDYENALSRYQDALSTCPNYL 79
                566899**********************975 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.088
      TPR_14   7 laeallalGdpdeAiallrrala 29 
                 +a+ +l+ +++++Ai+++  al+
  CCE29060.1  90 MAACYLQMEQWKDAIKAATSALD 112
                 678899***********998875 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.2
      TPR_14   3 allalaeallal 14 
                 all++a+a +++
  CCE29060.1 215 ALLRRARARAEA 226
                 555666655555 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.058   1.2e+02       8      32 ..      53      77 ..      50      78 .. 0.83
   2 ?    6.2   0.1    0.0096        19       5      26 ..      89     110 ..      86     112 .. 0.86
   3 ?    2.8   0.1      0.11   2.2e+02       2      16 ..     215     229 ..     214     237 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.058
                HHHHH.HHHHHHHHHHHHHHHHH-TT CS
       TPR_6  8 lsyrk.lgdtdkAlealerlikeYPd 32
                 ++++   d+++Al  +++ ++  P+
  CCE29060.1 53 NALYStH-DYENALSRYQDALSTCPN 77
                5667756.9***********999887 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0096
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerl 26 
                 ++a +y+++ ++ +A++a  + 
  CCE29060.1  89 NMAACYLQMEQWKDAIKAATSA 110
                 6999****88*******98765 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHH CS
       TPR_6   2 Alyklalsyrklgdt 16 
                 Al+++a+++ ++g +
  CCE29060.1 215 ALLRRARARAEAGGW 229
                 9*********97765 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.1    0.0013       2.6      28      78 ..      50     106 ..      37     110 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0013
                 HHHHHHHHTT-HHHHHHHHHCT.SHHHC-H.....HHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3  28 llAlclylngqykrAyellrka.klnsksl.....gcrylfAqcllkLkkyeeAiaa 78 
                 + A +ly++ +y+ A+  +++a  + ++ l      +   +A c+l+++++++Ai+a
  CCE29060.1  50 AEANALYSTHDYENALSRYQDAlSTCPNYLlyeraVVQSNMAACYLQMEQWKDAIKA 106
                 458999999999999999999944444444665444444589************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2498.83
//
Query:       CCE29061.1  [L=451]
Description: uncharacterized protein CPUR_02752 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-09   37.4  11.0     0.0092   16.8   0.0    6.2  7  WD40         WD domain, G-beta repeat
      0.005   17.1   0.9       0.48   10.8   0.2    4.0  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     1e-06    0.0092       5      38 .]       9      43 ..       6      43 .. 0.90
   2 ?    0.9   0.3      0.11   9.6e+02       7      37 ..      53      83 ..      49      84 .. 0.72
   3 ?   -2.3   0.0       1.2     1e+04      13      26 ..     210     222 ..     194     227 .. 0.70
   4 ?    0.6   0.0      0.14   1.2e+03       9      23 ..     228     243 ..     218     262 .. 0.63
   5 !    8.2   0.0   0.00054       4.9      15      37 ..     344     366 ..     329     367 .. 0.83
   6 ?   -1.1   0.0      0.49   4.4e+03      16      27 ..     377     388 ..     372     391 .. 0.76
   7 !   11.3   0.5   5.8e-05      0.52      16      38 .]     433     449 ..     422     449 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1e-06
                EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                 +++GH   v++ af +d+  la+G+  g v +Wd
  CCE29061.1  9 FVFRGHqAAVHAAAFLRDNERLATGDSQGFVVLWD 43
                689***777****************66*******9 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
                EESS.SSEEEEE.EETTSSEEEEEETTSEEEEE CS
        WD40  7 ltGH.ssvtsla.fspdgawlasGsdDgtvriW 37
                +++H + + +l+ + +d+   + G  D+ + +W
  CCE29061.1 53 WRAHeNAILGLCgWGRDKII-THGR-DHRLIVW 83
                67898889999866666555.3355.9999999 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.2
                 EEEEEEETTSSEEE CS
        WD40  13 vtslafspdgawla 26 
                 v+ l  s+ gaw++
  CCE29061.1 210 VHQL-CSSTGAWIL 222
                 5333.677888876 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.14
                 SS.SSEEEEEEETTSS CS
        WD40   9 GH.ssvtslafspdga 23 
                  H +++ sl++ pdg+
  CCE29061.1 228 VHsQPILSLDVRPDGK 243
                 5766799999666664 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.00054
                 EEEEETTSSEEEEEETTSEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriW 37 
                 sl + +dg+ +a++++D ++r++
  CCE29061.1 344 SLEVRSDGRIFATAGWDSKIRVY 366
                 677889***************98 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 0.49
                 EEEETTSSEEEE CS
        WD40  16 lafspdgawlas 27 
                 l++++dga+ ++
  CCE29061.1 377 LKWHKDGAYAVT 388
                 569999999765 PP

  == domain 7  score: 11.3 bits;  conditional E-value: 5.8e-05
                 EEEETTSSEEEEEETTSEEEEEE CS
        WD40  16 lafspdgawlasGsdDgtvriWd 38 
                        +w+a+G +Dg v +Wd
  CCE29061.1 433 T------HWVAAGAKDGRVSLWD 449
                 4......8**************9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.07   6.3e+02      37      79 ..      14      56 ..       9      69 .. 0.76
   2 ?   -1.5   0.0      0.35   3.2e+03      59      82 ..     156     179 ..     144     193 .. 0.76
   3 ?   -3.1   0.0       1.1   9.8e+03      30      51 ..     222     243 ..     206     245 .. 0.75
   4 !   10.8   0.2   5.4e-05      0.48      39      84 ..     340     384 ..     316     392 .. 0.77
   5 ?   -1.0   0.0      0.26   2.3e+03      51      68 ..     434     451 .]     415     451 .] 0.84

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.07
  ANAPC4_WD40 37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79
                 ++  v++ a+  d++ La + s+g v l d    +    ++++
   CCE29061.1 14 HQAAVHAAAFLRDNERLATGDSQGFVVLWDLIIMRARAVWRAH 56
                 677899999999*************999987655555555555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.35
  ANAPC4_WD40  59 dgevrlldaesgkvvhslsvksek 82 
                    +v +++  s+k +h+++ +s +
   CCE29061.1 156 SEAVDIFSLPSQKRIHTIRPGSAN 179
                  567889999999999999888775 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.1
  ANAPC4_WD40  30 wtleedkedsevrsLaWkpdgk 51 
                   t  ++ +++ + sL  +pdgk
   CCE29061.1 222 LTYRSQVHSQPILSLDVRPDGK 243
                  4446677788888999999987 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 5.4e-05
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekav 84 
                  s  +sL+ + dg+++a a  d+++r+++ ++ k +  l+ +++   
   CCE29061.1 340 SGQQSLEVRSDGRIFATAGWDSKIRVYSCKTMKELAVLKWHKDG-A 384
                  44478999**************************9999998874.4 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.26
  ANAPC4_WD40  51 klLavaysdgevrlldae 68 
                  +  a + +dg+v+l d++
   CCE29061.1 434 HWVAAGAKDGRVSLWDIY 451
                  567889999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3262.41
//
Query:       CCE29062.1  [L=399]
Description: probable panthotenate synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-92  309.9   0.0    1.5e-92  309.6   0.0    1.0  1  Pantoate_ligase  Pantoate-beta-alanine ligase


Domain annotation for each model (and alignments):
>> Pantoate_ligase  Pantoate-beta-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.6   0.0   8.1e-97   1.5e-92       2     266 .]      66     394 ..      65     394 .. 0.86

  Alignments for each domain:
  == domain 1  score: 309.6 bits;  conditional E-value: 8.1e-97
                      EEESHHHHHHHHHHHHHTT-EEEEEEE-SS-GHHHHHHHHHHHHHSSEEEEEEEEEGGGSSTTSCTTTSEEEHHHHHHHHHHTT-S........ CS
  Pantoate_ligase   2 iiktvaelrellkelrkegkkvglVpTmGaLHeGHlsLvkaakeendvvvvSiFvNplqFgpkedlekYPrtleaDlelleeagvd........ 87 
                      +++tv+++r++ k l  ++++vglVpTmGaLHeGH++L++aa++en++vvvSi+vNp+qFg +edl++YP t+e+D+++l++++ +        
       CCE29062.1  66 VLRTVDDVRKWRKPLLIDHRSVGLVPTMGALHEGHMALIRAAARENHHVVVSIYVNPAQFGIREDLASYPVTWETDTAALAKLDGEladeganl 159
                      789********9988777889*************************************************************9877889***** PP

                      ....EEE---HHHHST............EEEEECSGGCSTHHHHSTTHHHHHHHHHHHHHHHHT-SEEEEEGGGHHHHHHHHHHHHHTT-SSEE CS
  Pantoate_ligase  88 ....lvFaPsveemyp............ttvevkelsevlegasrpghFrGVatvvtkLfnivqpdrayfGqKDaqqlavirrlvkdlnlpvei 165
                          +vFaP++ +myp              v+++ + evlegasrp++FrGVatv++kLfnivqp+r+yfGqKD+qq++virr+v+dl +p+e+
       CCE29062.1 160 grvsAVFAPTTPDMYPsgfpgqevdskgSFVTITPVGEVLEGASRPTFFRGVATVCMKLFNIVQPERVYFGQKDVQQTLVIRRMVQDLMVPTEV 253
                      ***************9999999999999888889************************************************************ PP

                      EEEEEEBETTSEBTTGGGGGS-HHHHHHTTHHHHHHHHHH............BHHHHH............HHHHHHHH.THTTEEE.....EEE CS
  Pantoate_ligase 166 vavpivReedgLAlSSRNkyLseeerkaAlvlykaLkaak............eaealk............eaakeele.eeeleka.....dyv 229
                      v++p+ Re+dgLAl SRN+yL +++rk  lvly+aL+aa+            +    +             +a++ ++ +e    +     dy+
       CCE29062.1 254 VVCPTERESDGLALASRNVYLGTRRRKVGLVLYRALRAAEnayrggeaqtsrA----AilgaaqavcdgvLQAQKDMKpSE----RalfdiDYL 339
                      ****************************************8888876655440....144554433443322333333222....123445*** PP

                      EEEETTTSS..BSSB..SEEEEEEEEEE...T..............TEEEEEEEE CS
  Pantoate_ligase 230 eivdaetleeleleee.kkavllvaakv...g..............kvrLiDnii 266
                      +++d+++l+el++ +  ++a+l+ a+k+   +              +vrLiDnii
       CCE29062.1 340 SLADPDSLQELDEVDPrRGAILSGAVKMlsvEdsqegedlghsggpAVRLIDNII 394
                      *********9853333699*********665155666777788888*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2920.28
//
Query:       CCE29063.1  [L=836]
Description: related to glycerol-3-phosphate acyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-17   60.9   0.0    2.6e-16   59.5   0.0    1.7  2  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.37   6.6e+03      99     115 ..      35      51 ..      29      56 .. 0.74
   2 !   59.5   0.0   1.4e-20   2.6e-16      11     133 ..     205     333 ..     186     335 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.37
  Acyltransferase  99 PEGtrsregellpfkkG 115
                      PEGtr  +++ l+ +  
       CCE29063.1  35 PEGTREGKEQALMNQFA 51 
                      9****999887766555 PP

  == domain 2  score: 59.5 bits;  conditional E-value: 1.4e-20
  Acyltransferase  11 pekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidR..ksnaraagsleniselleegkl.vviFPEG 101
                      ++k+ +i+++ H+s++D++ l+l+ y+ ++ + +v++a+++ l++pl+g +++++g+++i+R  +++a + + ++ + + l +g +    F EG
       CCE29063.1 205 KKKQSIIFLPSHRSHVDYVSLQLICYRLGL-TLPVVVAGDN-LNFPLVGSFLQHAGAMWIRRsfGDDALYSTLVQSYIDTLLQGGYnFECFIEG 296
                      45999************************7.8999999999.566*****************8845555555555555566666666******* PP

  Acyltransferase 102 trsregellpfkkGlvrlaakak.....kgvpivPva 133
                      +rsr+g+llp+k G+ + +++       ++ +++Pv+
       CCE29063.1 297 GRSRTGKLLPPKFGILSFILDSIlsgrvDDAIVCPVS 333
                      ******************9999888989899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5723.77
//
Query:       CCE29064.1  [L=273]
Description: related to ribonuclease P protein subunit p29 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-28   97.0   0.2    9.3e-28   96.0   0.2    1.5  1  UPF0086   Domain of unknown function UPF0086


Domain annotation for each model (and alignments):
>> UPF0086  Domain of unknown function UPF0086
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.2   5.2e-32   9.3e-28       2      84 .]     124     213 ..     123     213 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 5.2e-32
                 HHCCSXXSS-EEEEEECSSTTTTTEEEEEEEEETTEEEEEECTTEEEEEESTTCEEEEEE........TTEEEEEECCCCSSXHHHHHCH CS
     UPF0086   2 kLlkadlhGaeveVvrsknpslvgikGiVvkEtkntlkivtkksrvktvpKegsvFefev.......kdvlevevdGsqlryrpadRaer 84 
                 kL++ +lhGa+ eVvrs+++ +vgikGi+v++ k++++i+t+k+++k+vpKeg++F++ev        + + ++v G+q+++r+adRa+r
  CCE29064.1 124 KLASVELHGAQAEVVRSRCSGRVGIKGIIVRDRKFVFEIITEKKGLKMVPKEGTTFRIEVnpesgddAKPFVFDVLGDQFMHRSADRANR 213
                 89****************************************************************966889****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2125.24
//
Query:       CCE29065.1  [L=1448]
Description: uncharacterized protein CPUR_02756 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-18   64.2   0.1    1.2e-17   63.3   0.1    1.5  1  GYF       GYF domain


Domain annotation for each model (and alignments):
>> GYF  GYF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.1   6.7e-22   1.2e-17       1      45 []     709     753 ..     709     753 .. 0.99

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 6.7e-22
         GYF   1 WeYkdpqgevqGPFsseeMqkWykagYFkdgllvrrvedsefysl 45 
                 W Y+dpqg vqGPF++ eM++Wyka++F+++l+v++ved ef++l
  CCE29065.1 709 WVYLDPQGLVQGPFTGLEMNDWYKANFFTPDLRVKKVEDPEFEPL 753
                 *******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.27s 00:00:01.16 Elapsed: 00:00:00.45
# Mc/sec: 9749.58
//
Query:       CCE29066.1  [L=1086]
Description: uncharacterized protein CPUR_02757 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-09   37.0   3.4     0.0022   18.0   0.0    5.0  4  TPR_2     Tetratricopeptide repeat
      1e-08   34.6   1.0      0.028   14.3   0.0    4.8  4  TPR_1     Tetratricopeptide repeat
    6.7e-07   29.0   1.7       0.14   12.4   0.0    5.1  5  TPR_8     Tetratricopeptide repeat
      6e-05   23.5   3.0      0.088   13.3   0.1    4.0  4  TPR_19    Tetratricopeptide repeat
    0.00021   21.5  10.3      0.022   15.0   0.0    4.4  5  TPR_12    Tetratricopeptide repeat
    0.00099   19.7   0.1    0.00099   19.7   0.1    3.9  4  TPR_16    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.082   12.4   0.0       0.21   11.1   0.0    1.7  1  SHNi-TPR  SHNi-TPR
      0.094   12.9   0.1      0.094   12.9   0.1    2.7  3  TPR_9     Tetratricopeptide repeat
       0.11   12.2   3.5        7.8    6.3   0.0    4.0  4  TPR_11    TPR repeat
       0.26   11.4   5.8       0.44   10.7   0.0    4.4  5  TPR_7     Tetratricopeptide repeat
        1.9    9.5  14.9        2.3    9.2   0.0    5.7  5  TPR_14    Tetratricopeptide repeat
        2.3    9.1   4.8         56    4.7   0.1    4.4  4  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.5    0.0011       1.6       7      29 ..     264     286 ..     258     288 .. 0.85
   2 ?   -0.7   0.0       1.4   2.1e+03       6      26 ..     568     588 ..     567     590 .. 0.89
   3 ?    5.8   0.1     0.011        17       4      29 ..     702     727 ..     699     730 .. 0.86
   4 !   18.0   0.0   1.5e-06    0.0022       1      28 [.     733     760 ..     733     764 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
       TPR_2   7 lGlayyklgdyeeAleafekAle 29 
                   + y+ lg++e+A++a+++A +
  CCE29066.1 264 SSNNYILLGRHEQAKQALQEAAQ 286
                 5789*****************86 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.4
       TPR_2   6 nlGlayyklgdyeeAleafek 26 
                 +l++a++ lg +  Ale f++
  CCE29066.1 568 ELAYAWAGLGSLTSALEIFKR 588
                 6999************99987 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.011
       TPR_2   4 lynlGlayyklgdyeeAleafekAle 29 
                    lG+ y++++d  +A ea++ A +
  CCE29066.1 702 QKSLGEHYLAQKDMPRAQEAYKLATS 727
                 5679*****************99876 PP

  == domain 4  score: 18.0 bits;  conditional E-value: 1.5e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAl 28 
                 ++++ +lG++ ++lg+++eA+ea+ +++
  CCE29066.1 733 PDLWSRLGDISLRLGQFNEAAEAYGRSI 760
                 579*********************9987 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.3     0.015        22      11      27 ..     268     284 ..     266     286 .. 0.91
   2 !    8.4   0.0    0.0013         2       2      31 ..     700     729 ..     699     730 .. 0.90
   3 !   14.3   0.0   1.9e-05     0.028       2      28 ..     734     760 ..     733     761 .. 0.92
   4 ?    0.9   0.0       0.3   4.5e+02       1      13 [.     772     784 ..     772     785 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.015
                 HHHTT-HHHHHHHHHHH CS
       TPR_1  11 yfklgkydeAleyyekA 27 
                 y  lg++++A ++ ++A
  CCE29066.1 268 YILLGRHEQAKQALQEA 284
                 889*************9 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALeln 31 
                 +a + lG  y+ +++   A e+y+ A ++n
  CCE29066.1 700 RAQKSLGEHYLAQKDMPRAQEAYKLATSVN 729
                 68899*******************998776 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekAL 28 
                 + + +lG + ++lg+++eA e+y + +
  CCE29066.1 734 DLWSRLGDISLRLGQFNEAAEAYGRSI 760
                 78*********************9887 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfk 13 
                 a+++ nlG a+ +
  CCE29066.1 772 ARTWSNLGSAFWS 784
                 799*****99875 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       9.4   1.4e+04      19      29 ..     154     164 ..     150     166 .. 0.83
   2 !    8.8   0.2    0.0013         2       9      28 ..     266     285 ..     258     288 .. 0.86
   3 ?    2.2   0.1      0.17   2.6e+02       7      31 ..     705     729 ..     699     730 .. 0.86
   4 !   12.4   0.0   9.5e-05      0.14       2      31 ..     734     763 ..     733     766 .. 0.90
   5 ?   -1.1   0.0         2     3e+03       1      14 [.     772     785 ..     772     785 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 9.4
                 HHHHHHHHHHH CS
       TPR_8  19 eAkeyyekale 29 
                  A  ++e++l+
  CCE29066.1 154 LARFVFEQCLT 164
                 58899****96 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0013
                 HHHHHTT-HHHHHHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyyekal 28 
                 + y+ lg++e+Ak+++++a 
  CCE29066.1 266 NNYILLGRHEQAKQALQEAA 285
                 66999************996 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.17
                 HHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleld 31 
                 lg  yl ++d+  A+e+y+ a++ +
  CCE29066.1 705 LGEHYLAQKDMPRAQEAYKLATSVN 729
                 566699999999*********9987 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 9.5e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleld 31 
                 +++ +lg+i l lg+++eA e+y + ++ +
  CCE29066.1 734 DLWSRLGDISLRLGQFNEAAEAYGRSISSA 763
                 6899*******************9999865 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 2
                 CCHHHHHHHHHHHT CS
       TPR_8   1 aeayynlgsiylkl 14 
                 a+ + nlgs+ ++l
  CCE29066.1 772 ARTWSNLGSAFWSL 785
                 799*******9986 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.3    0.0064       9.5      35      57 ..     268     290 ..     254     300 .. 0.83
   2 ?   -0.4   0.0       1.1   1.7e+03      31      53 ..     569     591 ..     559     601 .. 0.71
   3 !    7.1   0.0    0.0051       7.6      13      61 ..     686     735 ..     685     737 .. 0.87
   4 !   13.3   0.1   5.9e-05     0.088       2      48 ..     710     756 ..     709     766 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0064
      TPR_19  35 llalgqldeAealLdalpeedpd 57 
                 ++ lg+ ++A+++L+++ +++  
  CCE29066.1 268 YILLGRHEQAKQALQEAAQATGL 290
                 999*************9999877 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
      TPR_19  31 LAeallalgqldeAealLdalpe 53 
                 LA a   lg l+ A ++ ++l +
  CCE29066.1 569 LAYAWAGLGSLTSALEIFKRLRL 591
                 55666666677777777776665 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0051
      TPR_19  13 lleqalqedpk.naearllLAeallalgqldeAealLdalpeedpddary 61 
                 ++e+a++ + k +++a+  L e +la+++   A+++ + +   ++ ++++
  CCE29066.1 686 HYERAWTISKKrYSRAQKSLGEHYLAQKDMPRAQEAYKLATSVNRLSPDL 735
                 89******9999***********************998887777766655 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 5.9e-05
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealL 48 
                 la++d  +A+++++ a + +  +++++ +L ++ l lgq++eA ++ 
  CCE29066.1 710 LAQKDMPRAQEAYKLATSVNRLSPDLWSRLGDISLRLGQFNEAAEAY 756
                 8999999999999999999************************9876 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.021        31      55      73 ..     268     286 ..     253     289 .. 0.71
   2 ?   -3.0   0.1       6.3   9.4e+03      19      29 ..     579     589 ..     570     607 .. 0.59
   3 ?    5.5   0.1     0.014        20      44      72 ..     698     726 ..     671     730 .. 0.82
   4 !   15.0   0.0   1.5e-05     0.022       5      56 ..     735     783 ..     731     785 .. 0.93
   5 ?   -2.6   0.1       4.7   7.1e+03       6      29 ..     955     978 ..     951     985 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.021
      TPR_12  55 yralgryeeAlelleeala 73 
                 y +lgr+e+A ++l+ea +
  CCE29066.1 268 YILLGRHEQAKQALQEAAQ 286
                 6677777777777777754 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.3
      TPR_12  19 ydeAlelleka 29 
                 ++ Ale++++ 
  CCE29066.1 579 LTSALEIFKRL 589
                 34444444444 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.014
      TPR_12  44 tattlrnLgrlyralgryeeAlelleeal 72 
                 +++++  Lg+ y+a+++   A+e+++ a+
  CCE29066.1 698 YSRAQKSLGEHYLAQKDMPRAQEAYKLAT 726
                 56788888888888888888888888775 PP

  == domain 4  score: 15.0 bits;  conditional E-value: 1.5e-05
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyr 56 
                 ++++l+++ +rlg++ eA e + +++  a+ +lG++    a+t  nLg +++
  CCE29066.1 735 LWSRLGDISLRLGQFNEAAEAYGRSISSATDTLGGEG---ARTWSNLGSAFW 783
                 6889******************************997...********9987 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 4.7
      TPR_12   6 lnnlaavlrrlgrydeAlelleka 29 
                 ++ +  + +++ +++ A++  e+a
  CCE29066.1 955 WSLVSRLRAWRHDHAGAIDASERA 978
                 555666677888888888888887 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3         1   1.5e+03      10      27 ..     271     288 ..     266     299 .. 0.72
   2 ?   -0.1   0.1         1   1.6e+03      39      60 ..     568     589 ..     552     594 .. 0.81
   3 !   19.7   0.1   6.7e-07   0.00099       3      58 ..     705     758 ..     704     764 .. 0.90
   4 ?   -1.7   0.1       3.2   4.8e+03      49      63 ..     967     981 ..     946     989 .. 0.57

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1
      TPR_16  10 agdyddAaaaleaalkrd 27 
                 +g+ ++A  al++a  + 
  CCE29066.1 271 LGRHEQAKQALQEAAQAT 288
                 578888888888777666 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1
      TPR_16  39 llgdaalrqgrlaeAaalyraa 60 
                 +l+ a++ +g l+ A++ ++++
  CCE29066.1 568 ELAYAWAGLGSLTSALEIFKRL 589
                 79999**********9999886 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 6.7e-07
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyr 58 
                 l+  +l+++d ++A++a++ a+  +    + ++ +  lgd+ lr+g + eAa a+ r
  CCE29066.1 705 LGEHYLAQKDMPRAQEAYKLATSVN---RLSPDLWSRLGDISLRLGQFNEAAeAYGR 758
                 7899*********************...66666*******************66655 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 3.2
      TPR_16  49 rlaeAa.alyraalra 63 
                 ++a+A+ a  ra+  a
  CCE29066.1 967 DHAGAIdASERAWR-A 981
                 45555544444442.2 PP

>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.21       5      28 ..     737     760 ..     733     761 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
    SHNi-TPR   5 dlLGEislEnenFpqAveDlrkaL 28 
                  +LG+isl  ++F++A+e + +++
  CCE29066.1 737 SRLGDISLRLGQFNEAAEAYGRSI 760
                 58****************999986 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       6.2   9.2e+03      41      57 ..     270     286 ..     268     289 .. 0.78
   2 ?   -2.8   0.0       4.8   7.1e+03      34      50 ..     568     584 ..     557     601 .. 0.57
   3 ?   12.9   0.1   6.3e-05     0.094       4      53 ..     708     757 ..     705     766 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.2
       TPR_9  41 qlGclsaAladLeayla 57 
                  lG+ ++A ++L+ +++
  CCE29066.1 270 LLGRHEQAKQALQEAAQ 286
                 58999999999998876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.8
       TPR_9  34 dRGlllaqlGclsaAla 50 
                 + + + a lG l  Al+
  CCE29066.1 568 ELAYAWAGLGSLTSALE 584
                 55555566665555554 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 6.3e-05
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLe 53 
                  ++ ++d++ra +++ +   ++  +p+++   G +  +lG++++A+++  
  CCE29066.1 708 HYLAQKDMPRAQEAYKLATSVNRLSPDLWSRLGDISLRLGQFNEAAEAYG 757
                 5899******************************************9865 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   1.1       0.4     6e+02       4      21 ..     268     285 ..     266     287 .. 0.88
   2 ?    6.3   0.0    0.0052       7.8       1      42 []     706     747 ..     706     747 .. 0.91
   3 ?    5.9   0.1     0.007        10       1      21 [.     740     760 ..     740     762 .. 0.89
   4 ?   -1.3   0.0       1.2   1.9e+03      28      40 ..     772     784 ..     770     785 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.4
      TPR_11   4 yyeqGkyeeAieaYkkAl 21 
                 y  +G+ e+A +a+++A 
  CCE29066.1 268 YILLGRHEQAKQALQEAA 285
                 8889************96 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0052
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 G  y +q + + A eaYk A   +  ++++++ LG++ +++G
  CCE29066.1 706 GEHYLAQKDMPRAQEAYKLATSVNRLSPDLWSRLGDISLRLG 747
                 56699999999************************9988777 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.007
      TPR_11   1 GdayyeqGkyeeAieaYkkAl 21 
                 Gd+   +G+++eA eaY + +
  CCE29066.1 740 GDISLRLGQFNEAAEAYGRSI 760
                 788889***********9866 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.2
      TPR_11  28 aeayynLGlayyk 40 
                 a+ ++nLG a++ 
  CCE29066.1 772 ARTWSNLGSAFWS 784
                 6789******996 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       8.9   1.3e+04      12      25 ..     271     284 ..     268     291 .. 0.73
   2 ?   -1.8   0.1       2.9   4.3e+03       8      24 ..     585     601 ..     568     610 .. 0.58
   3 ?   -0.9   0.0       1.4   2.1e+03       5      28 ..     705     726 ..     703     733 .. 0.85
   4 ?   10.7   0.0   0.00029      0.44       2      28 ..     736     763 ..     735     770 .. 0.82
   5 ?   -2.3   0.0         4     6e+03       1      11 [.     774     784 ..     774     785 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.9
       TPR_7  12 lGdyeeAielyeqs 25 
                 lG++e+A + ++++
  CCE29066.1 271 LGRHEQAKQALQEA 284
                 89999997777764 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.9
       TPR_7   8 lysrlGdyeeAielyeq 24 
                 ++ rl+ ++e + +y  
  CCE29066.1 585 IFKRLRLWAEVALCYAS 601
                 45555566666666655 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.4
       TPR_7   5 LarlysrlGdyeeAielyeqsLal 28 
                 L++ y ++ d+ +A e y+   a+
  CCE29066.1 705 LGEHYLAQKDMPRAQEAYKL--AT 726
                 9999**************98..65 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.00029
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsL.al 28 
                 +++L+++  rlG++ eA+e y +s+   
  CCE29066.1 736 WSRLGDISLRLGQFNEAAEAYGRSIsSA 763
                 689********************87333 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 4
       TPR_7   1 aLlnLarlysr 11 
                 +++nL++++ +
  CCE29066.1 774 TWSNLGSAFWS 784
                 689*****976 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1       0.1   1.5e+02      12      31 ..     269     288 ..     255     300 .. 0.83
   2 ?    0.7   0.5      0.86   1.3e+03       6      27 ..     568     589 ..     563     603 .. 0.83
   3 ?    5.6   0.1     0.023        34       2      43 ..     700     741 ..     699     742 .. 0.92
   4 ?    9.2   0.0    0.0016       2.3       1      30 [.     733     762 ..     733     775 .. 0.89
   5 ?   -0.4   0.2         2     3e+03       6      27 ..     961     982 ..     953     987 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.1
      TPR_14  12 lalGdpdeAiallrralala 31 
                   lG++++A ++l++a ++ 
  CCE29066.1 269 ILLGRHEQAKQALQEAAQAT 288
                 568*************8764 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.86
      TPR_14   6 alaeallalGdpdeAiallrra 27 
                 +la a + lG +  A+++++r+
  CCE29066.1 568 ELAYAWAGLGSLTSALEIFKRL 589
                 79999999***********997 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.023
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +a++ l+e +la+ d  +A ++++ a + +  ++++w +l++
  CCE29066.1 700 RAQKSLGEHYLAQKDMPRAQEAYKLATSVNRLSPDLWSRLGD 741
                 68899**************************99***999986 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0016
      TPR_14   1 peallalaeallalGdpdeAiallrralal 30 
                 p+++ +l+++ l+lG++ eA++++ r ++ 
  CCE29066.1 733 PDLWSRLGDISLRLGQFNEAAEAYGRSISS 762
                 689*********************999875 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 2
      TPR_14   6 alaeallalGdpdeAiallrra 27 
                 ++a+ + ++G  d+++++ r+a
  CCE29066.1 961 LRAWRHDHAGAIDASERAWRAA 982
                 4566666777777777777776 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.038        56      10      27 ..     268     285 ..     261     287 .. 0.86
   2 ?   -1.2   0.0       2.8   4.2e+03       6      26 ..     569     589 ..     568     590 .. 0.80
   3 ?   -0.2   0.1       1.4   2.1e+03      10      24 ..     709     723 ..     704     727 .. 0.84
   4 ?    2.0   0.0      0.28   4.1e+02       5      25 ..     738     758 ..     737     763 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealerli 27 
                 y+ lg++++A++al++  
  CCE29066.1 268 YILLGRHEQAKQALQEAA 285
                 88899**********875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerl 26 
                 la++   lg  + Ale+++rl
  CCE29066.1 569 LAYAWAGLGSLTSALEIFKRL 589
                 5667777788999******98 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAleale 24 
                 y++++d  +A ea++
  CCE29066.1 709 YLAQKDMPRAQEAYK 723
                 77899********97 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealer 25 
                 +l+   ++lg+  +A ea+ r
  CCE29066.1 738 RLGDISLRLGQFNEAAEAYGR 758
                 5787788899*********88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1086 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 7621.67
//
Query:       CCE29067.1  [L=558]
Description: probable carnitine transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-93  313.9  31.0    1.8e-93  313.7  31.0    1.0  1  AA_permease    Amino acid permease
    1.3e-24   86.8  35.8    1.6e-24   86.6  35.8    1.0  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
      0.018   15.4   2.0      0.018   15.4   2.0    3.1  4  DUF1772        Domain of unknown function (DUF1772)


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.7  31.0   3.1e-97   1.8e-93       2     474 ..      40     508 ..      39     513 .. 0.96

  Alignments for each domain:
  == domain 1  score: 313.7 bits;  conditional E-value: 3.1e-97
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  +++ a+gg iGt+lfv++g  l+++Gp+++lla+ l  +v+++v +s++e+ +++p+sggf  +a + ++++lGf+ G+n+++++++ +++e+ta++ 
   CCE29067.1  40 IQLVAIGGSIGTALFVSIGTGLAKGGPGSLLLAFTLYPLVLACVNNSVAEMTILMPVSGGFIRLAGHWVDDALGFMAGWNFFLYEALLIPFEITAINL 137
                  7999********************************************************************************************** PP

  AA_permease 100 liqfwelvtdlpkawvt...gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfake 193
                  ++++w  ++ + k   t    a +++++ +in+++v++ygeaef+l+  k++ +  ++  +++++ gg+p+++  gfr+++++g+++  n + g    
   CCE29067.1 138 VLSYW--NEGITKPGPTaaiCAGVIILYAAINVLAVRAYGEAEFWLSGGKVVLLFMLFFYTFVTMLGGNPKHDVyGFRYWKEPGAFAVFNGSTG---- 229
                  *****..66666555552236667777789*******************************************************776666666.... PP

  AA_permease 194 eegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa........aspfvifikes 283
                  + g+f++f++ +  ++fa  G e+v ++a+E+k P+  i+ a++ + +r ++f+ +s+l++g+++p+n+++l++ ++++        asp+v  +k++
   CCE29067.1 230 DLGRFQGFLGSLWSAAFAVVGPEYVSMVAAEAKRPRTYIKTAFKTIYWRFGLFFFGSALCVGIVIPYNYPDLVA-ILTGesstsnaaASPYVMSMKML 326
                  9999**********************************************************************.777899***************** PP

  AA_permease 284 gvsvlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwl 381
                  gv+vl++++na+ lt+++s++n ++y+a+R ly la +g aP++l+k   +gvP+    ++m++ +l++l  +  ++  +v  +l+ + ++ g+i +l
   CCE29067.1 327 GVNVLPDFVNALMLTSIFSAGNTYTYCATRSLYGLALEGRAPRFLRKTWSNGVPIYCFCVVMLFPFLSFLQVGNGSK--KVVGWLVDLITAGGIIDYL 422
                  *********************************************************************99999999..******************* PP

  AA_permease 382 liilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                  ++++++l + +a k+qg++ + l++  +++p+g++++l++ ++++++++++a+++       w+++sf+  y + ll  ++++g+kl++++k 
   CCE29067.1 423 VMNVTFLYYYRACKAQGIDRKTLPYYGRFQPYGTYIALFVQTLVVIFYGYTAFTP-------WSVESFFRNYTMQLLAPVLFFGWKLFKRTKT 508
                  *******************************************************.......***************************9986 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6  35.8   2.7e-28   1.6e-24       8     408 ..      42     475 ..      35     497 .. 0.75

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 2.7e-28
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    +++ig  ig++ fv+   ++a+ggp ++l  ++   +++ +v    aE++ ++p sgG +  + +     ++f+++w +++  ++ +++  + a++
     CCE29067.1  42 LVAIGGSIGTALFVSIgtGLAKGGPGSLLLAFTLYPLVLACVNNSVAEMTILMPVSGGFIRLAGHWVDDALGFMAGWNFFLYEALLIPF-EITAIN 136
                    789**********998777778999877766666555558999*******99*************************887777665544.566666 PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.......stetdt......ffp 184
                      l+ +++ + +++ +t  i ++++il a+in+++++ ++ + ++l   k++ +l++l+   ++t  gg                        f+ 
     CCE29067.1 137 LVLSYWNEGI-TKPGPTAAICAGVIILYAAINVLAVRAYGEAEFWLSGGKVV-LLFMLFFYTFVTMLGGNPKHDvygfrywK----EpgafavFN- 225
                    6677788654.67899***********************************6.66666666666665544433347855531....234343333. PP

  AA_permease_2 185 ngwpgv.......llgllivlwsfdGfesaanvseevkk.kdvpkai...........figllivlvlyllvniaflgvvpddeianlsnlgsvaa 261
                     g++g        l++l  ++++++G e+++ v+ e+k+ +++ k++           f+g ++++++ + +n   l ++  +e ++++   s++ 
     CCE29067.1 226 -GSTGDlgrfqgfLGSLWSAAFAVVGPEYVSMVAAEAKRpRTYIKTAfktiywrfglfFFGSALCVGIVIPYNYPDLVAILTGESSTSNAAASPYV 320
                    .3443222322226666779****************997765444444555999999999999999999999988555444445455566688999 PP

  AA_permease_2 262 lffeavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslg 357
                      ++++g  v+  +v++l+  s++ a+nt+++ ++r l+ la +g  Prf++k++ +g pi++ ++++++ ++ +l +  +s + + +l+++ + g
     CCE29067.1 321 MSMKMLGVNVLPDFVNALMLTSIFSAGNTYTYCATRSLYGLALEGRAPRFLRKTWSNGVPIYCFCVVMLFPFLSFLQVGNGSKKVVGWLVDLITAG 416
                    ***********************************************************************877766665559999********** PP

  AA_permease_2 358 liisyllliigal.ilrkkrphl..kr....pgk.ilvaiigalfllfllvalffppkg 408
                     ii yl++ ++ l ++r ++ +   ++    +g+  + ++ +alf+  l+v+++ +++ 
     CCE29067.1 417 GIIDYLVMNVTFLyYYRACKAQGidRKtlpyYGRfQPYGTYIALFVQTLVVIFYGYTAF 475
                    ********999884455555544532257542223244444444444444444444442 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.47   2.8e+03      36      74 ..      37      79 ..      31      95 .. 0.62
   2 ?   15.4   2.0     3e-06     0.018       1      89 [.     113     204 ..     113     215 .. 0.80
   3 ?   -1.3   0.5      0.43   2.6e+03      37      78 ..     277     294 ..     238     330 .. 0.61
   4 ?   -2.8   0.2       1.2   7.1e+03      54      55 ..     352     364 ..     302     403 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.47
     DUF1772 36 kavfpplallsalafayla...araasrgarllylaaaal.ll 74
                ++++ ++a++ ++++a+++      a+ g   l+la ++  l+
  CCE29067.1 37 NRQIQLVAIGGSIGTALFVsigTGLAKGGPGSLLLAFTLYpLV 79
                5667778888888888444576444555555555444444444 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 3e-06
     DUF1772   1 GlilafslfvvPallslpassslllkqwrrlfkrg.kavfpplallsalafayla.....araasrgarllylaaaallllsivpyTllvmvPtN 89 
                 G+++ +++f   all + + +  + ++    ++ g ++  p++a+++ +  +y+a     +ra +++ ++l  ++ ++ll+ +++yT++ m   N
  CCE29067.1 113 GFMAGWNFFLYEALLIPFEIT--AINLVLSYWNEGiTKPGPTAAICAGVIILYAAinvlaVRAYGEAEFWLS-GGKVVLLFMLFFYTFVTMLGGN 204
                 889999999999999888555..44444455567779999********9999999***96666666666665.88889999**********8655 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.43
     DUF1772  37 avfpplallsalafaylaaraasrgarllylaaaallllsiv 78 
                   f+++ ++sal+++                         ++
  CCE29067.1 277 WRFGLFFFGSALCVG------------------------IVI 294
                 333444444444433........................333 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 1.2
     DUF1772  54 a...........a 55 
                 +            
  CCE29067.1 352 YcatrslyglalE 364
                 1334444444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3730.93
//
Query:       CCE29068.1  [L=714]
Description: uncharacterized protein CPUR_02759 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   11.8   0.0        0.3   10.7   0.0    1.5  1  DUF1987   Domain of unknown function (DUF1987)


Domain annotation for each model (and alignments):
>> DUF1987  Domain of unknown function (DUF1987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.7e-05       0.3      60      94 ..     434     468 ..     426     476 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.7e-05
     DUF1987  60 sYfntssskalldllelLeeaaekgkkvevnWyyd 94 
                 +Y+n++++ a+ +l++ L +  e++ kv+v+W + 
  CCE29068.1 434 AYMNSRTALAYKRLFQELFSCLEHQCKVQVRWQHI 468
                 7*******************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 5011.58
//
Query:       CCE29069.1  [L=1055]
Description: probable translation elongation factor eEF-3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-46  156.2   1.9    2.2e-23   83.3   0.0    3.9  2  ABC_tran        ABC transporter
    3.4e-28   97.5   3.3    3.5e-28   97.5   0.1    2.8  2  4HB             Four helical bundle domain
    5.8e-18   65.7   0.0      0.002   18.0   0.0    4.4  4  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    6.4e-16   58.5   0.2    3.6e-05   23.3   0.0    3.9  2  SMC_N           RecF/RecN/SMC N terminal domain
    6.9e-09   35.3   0.1     0.0047   16.6   0.0    2.5  2  AAA_29          P-loop containing region of AAA domain
      3e-08   33.7   0.0    0.00057   19.8   0.0    2.8  2  RsgA_GTPase     RsgA GTPase
    3.3e-08   34.3   0.4      7e-05   23.4   0.3    3.3  2  AAA_23          AAA domain
    1.4e-07   31.8   0.2      0.005   17.1   0.0    3.8  3  AAA_22          AAA domain
    2.5e-07   30.7   0.0     0.0024   17.9   0.0    3.1  2  MMR_HSR1        50S ribosome-binding GTPase
    1.9e-06   28.2   0.0      0.028   14.7   0.0    2.7  2  AAA_28          AAA domain
      2e-06   28.4   0.3        0.1   13.2   0.0    4.0  3  AAA_18          AAA domain
    9.9e-06   25.5   3.0      0.048   13.4   0.0    3.9  4  AAA_15          AAA ATPase domain
    1.9e-05   24.8   0.0     0.0015   18.6   0.0    2.8  2  Dynamin_N       Dynamin family
    2.8e-05   24.6   0.0       0.56   10.6   0.0    4.4  3  AAA             ATPase family associated with various cellula
    3.1e-05   24.4   0.1       0.21   12.0   0.0    3.5  2  AAA_16          AAA ATPase domain
    3.3e-05   24.1   0.0       0.41   10.8   0.0    3.3  2  AAA_33          AAA domain
    5.2e-05   23.6   0.0       0.65   10.4   0.0    3.1  2  RNA_helicase    RNA helicase
    6.1e-05   22.8   0.1       0.07   12.9   0.0    3.0  2  PduV-EutP       Ethanolamine utilisation - propanediol utilis
    9.1e-05   21.6   0.5       0.35    9.8   0.0    2.7  2  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
    0.00016   21.3   0.0      0.097   12.3   0.0    2.6  2  AAA_27          AAA domain
    0.00017   20.9   0.1          1    8.4   0.0    3.1  3  G-alpha         G-protein alpha subunit
    0.00037   20.5   0.6         16    6.1   0.1    4.4  3  HEAT            HEAT repeat
    0.00058   19.8   0.0       0.19   11.6   0.0    2.5  2  NACHT           NACHT domain
    0.00068   19.4   0.0        1.5    8.5   0.0    3.1  3  AAA_24          AAA domain
    0.00075   19.7   1.7       0.69   10.0   0.0    4.1  4  DUF87           Helicase HerA, central domain
     0.0012   18.9   0.0        2.9    7.9   0.0    3.3  3  AAA_14          AAA domain
     0.0013   18.4   0.2        3.2    7.3   0.0    3.6  3  cobW            CobW/HypB/UreG, nucleotide-binding domain
     0.0014   18.4   0.0          3    7.5   0.0    3.2  3  AAA_30          AAA domain
     0.0016   18.4   0.0        1.7    8.6   0.0    2.5  2  Rad17           Rad17 P-loop domain
     0.0046   16.3   0.5        2.1    7.6   0.0    3.2  3  Septin          Septin
     0.0048   17.1   0.0        1.7    8.9   0.0    3.6  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
      0.006   16.7   0.8        1.5    8.9   0.1    3.1  3  ParcG           Parkin co-regulated protein
     0.0072   16.3   0.1        3.2    7.6   0.0    3.2  2  ATPase_2        ATPase domain predominantly from Archaea
      0.008   15.9   0.0       0.38   10.5   0.0    2.4  2  PRK             Phosphoribulokinase / Uridine kinase family
     0.0082   16.4   0.0        7.7    6.8   0.0    2.9  2  Roc             Ras of Complex, Roc, domain of DAPkinase
     0.0085   15.5   1.3      0.094   12.0   0.2    2.2  2  Transglut_prok  Microbial transglutaminase
     0.0089   15.8   0.0        6.8    6.4   0.0    2.9  2  ATP_bind_1      Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
       0.01   15.0   1.4       0.32   10.1   0.0    2.7  2  NB-ARC          NB-ARC domain
      0.014   15.2   0.0        0.8    9.5   0.0    2.7  2  CLP1_P          mRNA cleavage and polyadenylation factor CLP1
      0.015   14.5   0.4       0.73    8.9   0.0    2.8  3  MMS19_C         RNAPII transcription regulator C-terminal
      0.015   14.8   0.1        3.3    7.2   0.0    2.4  2  AAA_7           P-loop containing dynein motor region
      0.017   14.9   0.0        4.9    6.8   0.0    2.9  2  IstB_IS21       IstB-like ATP binding protein
      0.019   14.6   0.0        5.8    6.5   0.0    2.5  2  ATP-synt_ab     ATP synthase alpha/beta family, nucleotide-bi
      0.026   13.6   0.2        2.4    7.2   0.0    2.4  2  T2SSE           Type II/IV secretion system protein
      0.042   13.8   0.1        8.7    6.2   0.0    2.4  2  Ploopntkinase3  P-loop Nucleotide Kinase3
      0.045   12.6   0.3        1.4    7.6   0.0    2.5  2  Adeno_IVa2      Adenovirus IVa2 protein
      0.049   13.2   0.0          9    5.8   0.0    3.3  2  AAA_25          AAA domain
      0.054   13.2   1.1      0.094   12.5   0.1    2.0  1  RPN6_C_helix    26S proteasome subunit RPN6 C-terminal helix 
      0.056   12.7   0.0         14    4.9   0.0    3.0  2  Zeta_toxin      Zeta toxin
      0.061   13.0   0.0         13    5.4   0.0    2.5  2  Cytidylate_kin  Cytidylate kinase
      0.073   12.4   0.0          5    6.4   0.0    2.7  2  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.085   12.8   0.1         18    5.2   0.1    2.7  2  NTPase_1        NTPase
        0.1   11.3   5.9        2.3    6.8   0.0    4.0  4  AAA_13          AAA domain
       0.11   12.5   0.2         43    4.1   0.0    3.2  3  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
        1.9    9.1   9.0         11    6.7   0.0    5.1  5  HEAT_EZ         HEAT-like repeat


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   1.3e-21   4.3e-19       1     137 []     452     583 ..     452     583 .. 0.78
   2 !   83.3   0.0   6.6e-26   2.2e-23       3     137 .]     697     936 ..     695     936 .. 0.73

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 1.3e-21
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvrenesdeeiekalsklglke 96 
                 l++ +l lk+g+++++ G+nG+GKStL++++ ++      ++ e+   ++ + e++l s++ e+ +++ + +      ++e +     ++++++l + +
  CCE29069.1 452 LNQTHLRLKRGQRYGLCGPNGSGKSTLMRAINNEQVEgfpKQSEV---KTVFVEHDLDSADTEMTTIEWTMKK-----LAEANVATTQDDVVKQLIDFG 542
                 67889***************************9976444455555...3444445666666666666555332.....334456666788888888888 PP

                 TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  97 lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++  v+ + s LSgG+k ++al+ra++++p++lllDEpt+
  CCE29069.1 543 FTEGMVSGEISALSGGWKMKLALCRAVFEAPDILLLDEPTN 583
                 9999998888******************************8 PP

  == domain 2  score: 83.3 bits;  conditional E-value: 6.6e-26
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE.....................EETTCEGGG........B-HHHCCHCEEEE-SS--S-T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxx........xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGei.....................lldgkdlke........qeleslrkeigvlpqepqlfp 72 
                 +++++++ g+++a++G+nGaGKStL+++l+g+l pt+Gei                     +ld++++++        +++e +++  ++++++     
  CCE29069.1 697 DITFQCSLGSRIAVIGPNGAGKSTLINVLTGELIPTKGEIyqheniriayikqhafahidnHLDSTPSEYiqwrfqtgEDRETMDRANKIITED----- 790
                 89**************************************777777777666666666666555555555555555555555555555555555..... PP

                 TSBHHHH.........................................................................................HHH CS
                 xxxxxxx.........................................................................................xxx RF
    ABC_tran  73 eltvren.........................................................................................esd 82 
                                                                                                                   +
  CCE29069.1 791 ------DekamdkvfriegtqrriiginsrrkfknsyeyecscaigenigmknerwtpmmsadnvwlprnellashqkmvadvdmkealasgqfrpLVR 883
                 ......044444444446778999999999********************9999999999999998888877777766666555554444444333333 PP

                 TCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                 +eie+  +++gl+    + v++s  + LSgGq+++ +la++ +++p l++lDEpt+
  CCE29069.1 884 KEIEAHCANFGLDA---ELVSHSRmRGLSGGQRVKTVLAACSWQRPHLIVLDEPTN 936
                 33555555555444...44444444******************************8 PP

>> 4HB  Four helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       7.4   2.4e+03      17      60 ..      56      95 ..      47     105 .. 0.48
   2 !   97.5   0.1   1.1e-30   3.5e-28       1      78 []     340     417 ..     340     417 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 7.4
         4HB 17 kkkkvaekfepvleYiaAiAgqLiDekeidsaaWvenlkpyvtv 60
                 kk+ a+k ++v+   a++A + i    + +++ ++n+ py+ v
  CCE29069.1 56 LKKSLANKKDAVAREQACVAIEAI----ASHSEVAANVEPYLVV 95
                334444444444444444443322....2223334556666655 PP

  == domain 2  score: 97.5 bits;  conditional E-value: 1.1e-30
         4HB   1 GdietvlailkeilkskkkkvaekfepvleYiaAiAgqLiDekeidsaaWvenlkpyvtvivgekeakeivdelRkrA 78 
                 Gd ++vl++lke+l++k++++++k+ pv+eYiaA+AgqLiDeke+++  Wv+nlk+y++vi+g ++a+++vd+lRkrA
  CCE29069.1 340 GDQNVVLGKLKEVLSPKYASYLDKMGPVAEYIAAMAGQLIDEKESENLVWVDNLKAYIAVITGIDNAEATVDSLRKRA 417
                 99***************************************************************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   6.1e-06     0.002       3      19 ..     466     482 ..     465     512 .. 0.83
   2 !   13.0   0.0    0.0002     0.066     238     301 ..     556     613 ..     542     615 .. 0.79
   3 !   16.3   0.0     2e-05    0.0067       3      44 ..     709     744 ..     708     753 .. 0.84
   4 !   12.6   0.0   0.00026     0.085     234     300 ..     905     965 ..     896     968 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 6.1e-06
      AAA_21   3 vliGpNgsGKSnLLdal 19 
                 +l GpNgsGKS+L++a+
  CCE29069.1 466 GLCGPNGSGKSTLMRAI 482
                 699************** PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.0002
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell..kelsrngaQviltTHSpll 301
                 S G k  lal  a+++a+   ++ll+DEp n+L+ k ++ l + l  + +++     i+++H+  +
  CCE29069.1 556 SGGWKMKLALCRAVFEAP---DILLLDEPTNHLDVKNVKWLEQYLcdSPCTS-----IIVSHDSGF 613
                 666666678888999999...9*************99999988777666666.....777777655 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 2e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirk 44 
                 ++iGpNg+GKS+L+  l       +++++++ e   + +ir+
  CCE29069.1 709 AVIGPNGAGKSTLINVL------TGELIPTKGEIYQHENIRI 744
                 79***************......8888888888888888776 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 0.00026
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpl 300
                 +r lS G++    +l+a+  +++   l+++DEp n L+   l  l + lk+ +     vi+ THS +
  CCE29069.1 905 MRGLSGGQRVK-TVLAACSWQRP--HLIVLDEPTNYLDRDSLGALSKALKKFEG---GVIIITHSAE 965
                 56788899999.99999999998..8***********************99999...********86 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.5e-07   4.8e-05      29     205 ..     467     617 ..     451     628 .. 0.77
   2 !   23.3   0.0   1.1e-07   3.6e-05      27     207 ..     708     972 ..     697     983 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.5e-07
                 EEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  29 ivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsell 127
                 + GpNGSGKs l+ Ai       ++              ++ + + k+ ev+ +f ++d + + ++e ++i+ ++k+  e +++  + +v k+ +   +
  CCE29069.1 467 LCGPNGSGKSTLMRAI-------NN--------------EQVEGFPKQSEVKTVFVEHDLD-SADTEMTTIEWTMKKLAEANVATTQDDVVKQLIDFGF 543
                 6788888888888888.......22..............3445678889999999988888.7888899999999999998888777777777777667 PP

                 HCTT-S..TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 128 esagis..kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                  + ++s  +++LSgG k  + laL  A+   +   + llDe   +LD knvk + ++l  +   +  i++s+++++l ++
  CCE29069.1 544 TEGMVSgeISALSGGWK--MKLALCRAVF--EAPDILLLDEPTNHLDVKNVKWLEQYLCDSP--CTSIIVSHDSGFLDNV 617
                 66655422557888888..4666666654..4556899*********************999..999******9999876 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 1.1e-07
                 EEEEESTTSSHHHHHHHHHHHCTT......TTTTTTCHCCCCCC--..BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGer.....sakklrseklsdlihk..skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkev 118
                  a++GpNG+GKs l++ +   L  +     + +++r + +++  ++   ++ +s+ + +++  f+  ++++++++ +  i+   ++  +  ++i+g++ 
  CCE29069.1 708 IAVIGPNGAGKSTLINVLTGELIPTkgeiyQHENIRIAYIKQHAFAhiDNHLDSTPSEYIQWRFQTGEDRETMDRANKIITEDDEKAMDKVFRIEGTQR 806
                 589*************99887754411112344566665555554465666677778899999999999889999999999999999999999998776 PP

                 -HHHHHHHHHCTT-STT.................................................................................. CS
                 xxxxxxxxxxxxxxxxx.................................................................................. RF
       SMC_N 119 tkkevsellesagiske.................................................................................. 135
                 +   ++   ++ +++ +                                                                                  
  CCE29069.1 807 RIIGIN---SRRKFKNSyeyecscaigenigmknerwtpmmsadnvwlprnellashqkmvadvdmkealasgqfrplvrkeieahcanfgldaelvsh 902
                 665554...44555555556789**************************************************************************** PP

                 ....CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SC CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ....lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadk 207
                      LSgG++  +    ++A  + ++  l +lDe    LD     ++++ lk+ +    +i+i++++e++++  +
  CCE29069.1 903 srmrGLSGGQRVKT----VLAACSWQRPHLIVLDEPTNYLDRDSLGALSKALKKFE--GGVIIITHSAEFTKDLTE 972
                 **********9655....566668888889***********************999..99*********9998743 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.5e-05    0.0047      16      43 ..     456     483 ..     451     484 .. 0.78
   2 !   15.9   0.1   2.4e-05    0.0079      21      49 ..     704     732 ..     695     737 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.5e-05
      AAA_29  16 tieidlkgatlltGpsGsGKSTllDAiq 43 
                  +++++ + + l Gp+GsGKSTl+ Ai+
  CCE29069.1 456 HLRLKRGQRYGLCGPNGSGKSTLMRAIN 483
                 566664448889************9885 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2.4e-05
      AAA_29  21 lkgatlltGpsGsGKSTllDAiqalLvpa 49 
                 l + + ++Gp+G+GKSTl+  ++  L+p+
  CCE29069.1 704 LGSRIAVIGPNGAGKSTLINVLTGELIPT 732
                 4457899************7776666665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0012      0.38      94     123 ..     456     486 ..     419     526 .. 0.75
   2 !   19.8   0.0   1.8e-06   0.00057      85     133 ..     690     739 ..     668     744 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0012
                  HHHCTT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  94 kellkd.ktsvlvGqSGvGKStLinallpel 123
                  + +lk  +   l+G+ G GKStL+ a+++e+
   CCE29069.1 456 HLRLKRgQRYGLCGPNGSGKSTLMRAINNEQ 486
                  44555558889****************9984 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 1.8e-06
                  TTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase  85 ktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevsek 133
                  +tk ++++++ +++  + ++++G+ G+GKStLin+l++el    ge+ ++
   CCE29069.1 690 TTKPQIADITFQCSLgSRIAVIGPNGAGKSTLINVLTGELIPTKGEIYQH 739
                  456778888888876588899*****************988888887665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   9.2e-06     0.003      24      40 ..     467     483 ..     453     533 .. 0.90
   2 !   23.4   0.3   2.1e-07     7e-05      23     121 ..     709     818 ..     696     841 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9.2e-06
      AAA_23  24 ItGpNGaGKTTildAik 40 
                 ++GpNG+GK+T+++Ai 
  CCE29069.1 467 LCGPNGSGKSTLMRAIN 483
                 79*************96 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 2.1e-07
      AAA_23  23 lItGpNGaGKTTildAiklaLygetprlsrks...grgfeksdveiese.....gkvkayveltfenkdgry.....trsiererelskkkgkttkkak 108
                 +++GpNGaGK+T+++ ++  L   +++    +      ++++ ++          + ++y++ +f++  +r+     +++i+++ e++ +k  ++ +++
  CCE29069.1 709 AVIGPNGAGKSTLINVLTGELIPTKGEIYQHEnirIAYIKQHAFAH--IdnhldSTPSEYIQWRFQTGEDREtmdraNKIITEDDEKAMDKVFRIEGTQ 805
                 567************9887777655444443333333444444442..1335657788999999*99888889****999999*****9*99999**** PP

      AAA_23 109 lelleideleqfi 121
                 +++++i+ +++f 
  CCE29069.1 806 RRIIGINSRRKFK 818
                 ****999887765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-05     0.005      10      82 ..     467     538 ..     460     596 .. 0.81
   2 !    9.6   0.0    0.0032         1       8      29 ..     708     729 ..     704     774 .. 0.80
   3 ?   -1.2   0.0       6.8   2.2e+03      76     114 ..     911     948 ..     850     966 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.5e-05
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellralglelkaerlsseelleal 82 
                 ++G+ G+GK+tl+r + ++ + e ++++ ++++vfv+   ++  +  +  ++  ++l + + a   ++++++++l
  CCE29069.1 467 LCGPNGSGKSTLMRAINNEQV-EGFPKQSEVKTVFVEHDLDSadTEMTTIEWTMKKLAEANVA--TTQDDVVKQL 538
                 8*****************975.56777788888876655555448888888888888887777..4444444655 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0032
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++v+G+ G+GK+tl++ l+ +l
  CCE29069.1 708 IAVIGPNGAGKSTLINVLTGEL 729
                 79*************9887766 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 6.8
      AAA_22  76 eellealeqalraravielliiDEaqh.lrseealeeLrs 114
                  + ++++  a++ ++  +l+++DE  + l   + l  L++
  CCE29069.1 911 GQRVKTVLAACSWQRP-HLIVLDEPTNyL-DRDSLGALSK 948
                 4444555555555666.99****988878.5555555544 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0032         1       3      22 ..     466     498 ..     464     603 .. 0.75
   2 !   17.9   0.0   7.3e-06    0.0024       1      23 [.     707     729 ..     707     756 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0032
                 EEEESTTSSHHHHHHHHHT.............S CS
    MMR_HSR1   3 aivGrpNvGKStLinaltg.............e 22 
                 ++ G   +GKStL++a+ +             +
  CCE29069.1 466 GLCGPNGSGKSTLMRAINNeqvegfpkqsevkT 498
                 789999***********9844444444444440 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 7.3e-06
                 EEEEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgek 23 
                 ++a++G   +GKStLin ltge 
  CCE29069.1 707 RIAVIGPNGAGKSTLINVLTGEL 729
                 69******************973 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0015      0.49       4      43 ..     467     509 ..     464     536 .. 0.72
   2 !   14.7   0.0   8.5e-05     0.028       1      57 [.     707     771 ..     707     795 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0015
      AAA_28   4 itGgestGKTtlleaLaar...gypvvpEaareileeklakge 43 
                 + G+ ++GK+tl++a++++   g+p   E+ + ++e+ l++  
  CCE29069.1 467 LCGPNGSGKSTLMRAINNEqveGFPKQSEVKTVFVEHDLDSAD 509
                 78***************87678888889999999988874433 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 8.5e-05
      AAA_28   1 kivitGgestGKTtlleaLaar.....gypvvpEaar.eileekl.akgedalpwv.edllafae 57 
                 +i+++G+ ++GK+tl++ L+ +     g  + +E  r  ++++++ a   ++l+++  + ++ + 
  CCE29069.1 707 RIAVIGPNGAGKSTLINVLTGEliptkGEIYQHENIRiAYIKQHAfAHIDNHLDSTpSEYIQWRF 771
                 79******************554555454455777772566666644444777776555555443 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       4.3   1.4e+03      45      91 ..      37      88 ..       8      97 .. 0.67
   2 !   13.2   0.0   0.00031       0.1       3      45 ..     467     521 ..     466     543 .. 0.63
   3 !    9.6   0.0    0.0038       1.3       1      25 [.     708     747 ..     708     810 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 4.3
      AAA_18 45 aldeskrldedkldklldaleenss......aleegknlvidghlaeleseaa 91
                 + + +++d+d+  k++d+l+++ +      a+e++  + i+ + ++ e +a+
  CCE29069.1 37 SFINGRIEDQDVPTKIIDNLKKSLAnkkdavAREQA-CVAIEAIASHSEVAAN 88
                567788999999999999999987777776433333.3367777666665555 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00031
      AAA_18   3 ltGtpGvGKttlakeLskrl..gf..........gvnlrdvakenglllevdpea 45 
                 l+G+ G+GK+tl ++++++   gf          +++  d a  +++ +e++ ++
  CCE29069.1 467 LCGPNGSGKSTLMRAINNEQveGFpkqsevktvfVEHDLDSADTEMTTIEWTMKK 521
                 8***************777433448844444444444444444444444444444 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0038
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf................g 25 
                 I++ G+ G+GK+tl + L  +l +                 
  CCE29069.1 708 IAVIGPNGAGKSTLINVLTGEL-IptkgeiyqheniriayI 747
                 89**************995544.222433344333344441 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.5       2.8     9e+02     188     229 ..      26      67 ..       3      94 .. 0.50
   2 !   13.4   0.0   0.00015     0.048      28     104 ..     467     523 ..     454     545 .. 0.64
   3 !    9.0   0.1     0.003      0.99      26      44 ..     708     726 ..     697     838 .. 0.61
   4 ?   -2.1   0.0       7.3   2.4e+03     323     367 ..     925     965 ..     922     967 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.8
      AAA_15 188 nvlksaiiklllisakRnvsdedsekkssllgklkekileea 229
                   +k+++ +l  + + R  +++  +k+ ++l k + ++++  
  CCE29069.1  26 ADIKESSNQLASFINGRIEDQDVPTKIIDNLKKSLANKKDAV 67 
                 334444444444444444444444444444444444444433 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00015
      AAA_15  28 liGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvefaekekakeyektlkskekkka 104
                 l+G+N+sGKS++++a+    nn             e++e f ++se k++ +++     ++a++++ t +++ kk a
  CCE29069.1 467 LCGPNGSGKSTLMRAI----NN-------------EQVEGFPKQSEVKTVFVEHDL---DSADTEMTTIEWTMKKLA 523
                 8***************....32.............344555555555555555555...444555555555555555 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.003
      AAA_15  26 tvliGkNnsGKSsileald 44 
                   +iG+N++GKS+++++l 
  CCE29069.1 708 IAVIGPNGAGKSTLINVLT 726
                 579*************993 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 7.3
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSph 367
                 ++++++++EP ++L  +    l k+lk+     ++ vii THS  
  CCE29069.1 925 RPHLIVLDEPTNYLDRDSLGALSKALKKF----EGGVIIITHSAE 965
                 67888888888887666666555555554....334788888865 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.22        73       3      23 ..     467     487 ..     466     608 .. 0.89
   2 !   18.6   0.0   4.6e-06    0.0015       1      75 [.     708     790 ..     708     934 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.22
                 EEEBTTTTHHHHHHHHHTS-- CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedi 23 
                 ++G   sGKS+++ a+  e++
  CCE29069.1 467 LCGPNGSGKSTLMRAINNEQV 487
                 68999**********999887 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 4.6e-06
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C........CS...SSEEEE.T-EB--CHHHHHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas........eravkeelkek.ekkledfsevreeieke 75 
                 iav+G   +GKS+++n L+ge   p++ ++     + + + ++            + ++ ++++ +  ++ e +++ ++ i++ 
  CCE29069.1 708 IAVIGPNGAGKSTLINVLTGEL-IPTKGEIYQHENIRIAYIKQHAFAhidnhldsTPSEYIQWRFQtGEDRETMDRANKIITED 790
                 89******************99.5888888888888888855444322322222111111222211333333333333333333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       1.4   4.4e+02      81     120 ..     210     249 ..     199     253 .. 0.86
   2 !   10.6   0.0    0.0017      0.56       3      23 ..     467     493 ..     465     580 .. 0.70
   3 ?    6.6   0.0     0.031        10       3      23 ..     710     733 ..     708     799 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHH CS
         AAA  81 eeervvnqLlteldgvkkkeskvivigatnrpdkldpall 120
                 + +r +++L++ + + ++  ++v ++gat+ + +++++ l
  CCE29069.1 210 DIDRFIPELIKCIAKPENVPETVHLLGATTFVTEVQEPTL 249
                 56788999**********************9888887765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0017
                 EESSTTSSHHHHHHHHHHHH......T CS
         AAA   3 lyGppGtGKTllakavakel......g 23 
                 l+Gp G GK++l++a+ +e       +
  CCE29069.1 467 LCGPNGSGKSTLMRAINNEQvegfpkQ 493
                 89****************953333321 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.031
                 EESSTTSSHHHHHHHHHHHH...T CS
         AAA   3 lyGppGtGKTllakavakel...g 23 
                 ++Gp G GK++l++ +  el   +
  CCE29069.1 710 VIGPNGAGKSTLINVLTGELiptK 733
                 89**************99975552 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0      0.01       3.3      29      49 ..     467     487 ..     451     540 .. 0.72
   2 !   12.0   0.0   0.00063      0.21      26     104 ..     707     774 ..     699     960 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.01
      AAA_16  29 lsGesGvGKsslvrellrale 49 
                 l G+ G+GKs+l+r++ ++  
  CCE29069.1 467 LCGPNGSGKSTLMRAINNEQV 487
                 67************9987444 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00063
      AAA_16  26 lvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleea 104
                  + ++G+ G GKs+l++ l  +l  +     +g+  q+ ++i     + ++++ + ++ ++++++s+  e+ + ++++ 
  CCE29069.1 707 RIAVIGPNGAGKSTLINVLTGELIPT-----KGEIYQH-ENI----RIAYIKQ-HAFAHIDNHLDSTPSEYIQWRFQTG 774
                 578**************999777766.....4444444.222....2455634.7777777776666666666665554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0    0.0013      0.41       4      38 ..     467     500 ..     466     540 .. 0.70
   2 !    9.4   0.0    0.0035       1.1       3      54 ..     709     772 ..     708     820 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0013
      AAA_33   4 lvGlpGsGKstlaerllkklgavllssdtlrrrlf 38 
                 l+G++GsGKstl + +  +++++   + ++ +++f
  CCE29069.1 467 LCGPNGSGKSTLMRAIN-NEQVEGFPKQSEVKTVF 500
                 7***********99864.44555555555555555 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0035
      AAA_33   3 llvGlpGsGKstlaerllkklg...avllssdt.....lrrrlfg....tdqqsktdytrvldr 54 
                  ++G++G+GKstl+  l  +l    +++    +     +++  f+      + ++++y++++++
  CCE29069.1 709 AVIGPNGAGKSTLINVLTGELIptkGEIYQHENiriayIKQHAFAhidnHLDSTPSEYIQWRFQ 772
                 589***********99977765555555444443333222222224443444556666666666 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0041       1.3       3      26 ..     467     490 ..     466     508 .. 0.75
   2 !   10.4   0.0     0.002      0.65       2      36 ..     709     738 ..     708     761 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0041
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l+Gp+g GKStl++ + ++  + +
    CCE29069.1 467 LCGPNGSGKSTLMRAINNEQVEGF 490
                   79************9877766544 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.002
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvys 36 
                    + Gp+g GKStl++ L+ +l      ++k+++y 
    CCE29069.1 709 AVIGPNGAGKSTLINVLTGELI-----PTKGEIYQ 738
                   689*************998888.....55555554 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0      0.02       6.5       6      27 ..     467     488 ..     463     535 .. 0.87
   2 !   12.9   0.0   0.00021      0.07       3      51 ..     707     770 ..     705     824 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.02
   PduV-EutP   6 liGkvgsGKttLtqalkgeelk 27 
                 l G+ gsGK tL++a+++e+++
  CCE29069.1 467 LCGPNGSGKSTLMRAINNEQVE 488
                 789***************9986 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00021
   PduV-EutP   3 killiGkvgsGKttLtqalkg..............eelkYkktqaiefsdeviD.tPGeylenr 51 
                 +i +iG+ g+GK tL + l+g               ++ Y k  a  + d+ +D tP ey++ r
  CCE29069.1 707 RIAVIGPNGAGKSTLINVLTGeliptkgeiyqhenIRIAYIKQHAFAHIDNHLDsTPSEYIQWR 770
                 899******************999999999999777899*************9978*****988 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0011      0.35      15      52 ..     448     485 ..     438     492 .. 0.89
   2 !    9.0   0.1    0.0018       0.6      17      54 ..     693     730 ..     677     736 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
                 HHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHH CS
        MeaB  15 akellerllakaGraqvvGltGvPGaGkstlvealgle 52 
                 ak ll++   +  r q+ Gl G  G+Gkstl+ a+  e
  CCE29069.1 448 AKILLNQTHLRLKRGQRYGLCGPNGSGKSTLMRAINNE 485
                 788999999999********************998765 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0018
                 HHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHH CS
        MeaB  17 ellerllakaGraqvvGltGvPGaGkstlvealglelr 54 
                   +  ++ ++    ++ + G  GaGkstl++ l+ el+
  CCE29069.1 693 PQIADITFQCSLGSRIAVIGPNGAGKSTLINVLTGELI 730
                 55667778888899*******************99987 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0    0.0003     0.097      31      68 ..     467     505 ..     445     543 .. 0.82
   2 ?    6.2   0.0     0.021       6.7      31      46 ..     710     725 ..     696     731 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0003
      AAA_27  31 iyGpNEAGKstalrAis.dllfGipertkdnflhdakkL 68 
                 + GpN +GKst++rAi+ + + G+p++++ + ++ +++L
  CCE29069.1 467 LCGPNGSGKSTLMRAINnEQVEGFPKQSEVKTVFVEHDL 505
                 47**************72577899999999999988877 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.021
      AAA_27  31 iyGpNEAGKstalrAi 46 
                 ++GpN AGKst+++ +
  CCE29069.1 710 VIGPNGAGKSTLINVL 725
                 89*********98765 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       1.2   3.8e+02      92     186 ..      19     239 ..       4     264 .. 0.54
   2 !    8.2   0.0    0.0036       1.2      10      73 ..     449     510 ..     441     617 .. 0.82
   3 !    8.4   0.0    0.0032         1      25     109 ..     707     794 ..     691     893 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.2
                 HC-SS-SCCCS-HCHHHH...................................HHCCHHC-HCHHH................................. CS
     G-alpha  92 qelkerldplkkveasliaklssateee.........................qeiefnpraevge................................. 132
                  +++++++++k+++++l++++++  e++                                    +                                  
  CCE29069.1  19 LTVSKEAADIKESSNQLASFINGRIEDQdvptkiidnlkkslankkdavareqA----------CVaieaiashsevaanvepylvvllpsvlaavgdk 107
                 555566666666666666666655555565555555553333332222222210..........11222233333333344444455555555555555 PP

                 ........................................................................HHHHHC.CSHHHHHH.HC...CGCCTT CS
     G-alpha 133 ........................................................................dikaLw.ndpgiqel.ye...rrnkik 154
                                                                                           +a+w +++ ++e  y+   +  ++ 
  CCE29069.1 108 itavktaasaavsaiagaingnackaalpaimesirtaqkwpekmaaldfidvliktapaqlayrvpdlipvVSEAMWdTKKEVKERaYQtmeQICQLI 206
                 555555555555555555555555555555555555555666666666666666666666666666666666666777444555554233321334444 PP

                 --TTHHHHHCT.HHHHCSTT----CHHHHCS-- CS
     G-alpha 155 lednaeyFldd.leritspdYlptddDilkarl 186
                 ++ +++ F+ + ++ i++p+ +p+  ++l a +
  CCE29069.1 207 VNKDIDRFIPElIKCIAKPENVPETVHLLGATT 239
                 678888888876777888888888877777754 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0036
                 XXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHH CS
     G-alpha  10 slkaerkarkkkrevkllllGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrsikt 73 
                 ++  +++  + kr  +  l+G ++SGKsT+++ +     +gf ++   + + v  ++ ++s++t
  CCE29069.1 449 KILLNQTHLRLKRGQRYGLCGPNGSGKSTLMRAINNEQVEGFPKQ--SEVKTVFVEHDLDSADT 510
                 555666666667788889****************98888888888..66666666666666555 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0032
                 EEEEEESTTSSHHHHHHHHH..HHCS--..--HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT..........HHHC-SS-SCCCS-HCHHHH CS
     G-alpha  25 kllllGqseSGKsTilkqlk..llykkg..fseeelatwraviqlnivrsiktilealesleselsesf...elqelkerldplkkveasli 109
                 ++ ++G ++ GKsT+++ l   l+ +kg  +++e++++  a+i ++   +i++ l+   s+ ++   +f   e++e  +r++++ + +++++
  CCE29069.1 707 RIAVIGPNGAGKSTLINVLTgeLIPTKGeiYQHENIRI--AYIKQHAFAHIDNHLDSTPSEYIQW--RFqtgEDRETMDRANKIITEDDEKA 794
                 8999***************9987777777788885555..8999**9999*99999999987777..4433667777777777766666543 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1      0.33   1.1e+02       2      30 ..      53      82 ..      52      83 .. 0.74
   2 ?    6.1   0.1     0.048        16       1      28 [.      96     123 ..      96     125 .. 0.96
   3 ?    5.8   0.0     0.061        20       1      29 [.     176     204 ..     176     206 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.33
                HHHHHHHH.T-SSHHHHHHHHHHHHHHHHC CS
        HEAT  2 lPlllkll.sDpspeVReaAakaLgalaev 30
                ++ l k l + +++  Re A+ a+ a+a++
  CCE29069.1 53 IDNLKKSLaNKKDAVAREQACVAIEAIASH 82
                6667778834455555************97 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.048
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 llP +l +  D+   V  aA  a+ a+a
  CCE29069.1  96 LLPSVLAAVGDKITAVKTAASAAVSAIA 123
                 89***********************997 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.061
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l+P++ +++ D+  eV e A +++ ++++
  CCE29069.1 176 LIPVVSEAMWDTKKEVKERAYQTMEQICQ 204
                 79**************************8 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00058      0.19       5      39 ..     467     501 ..     464     519 .. 0.91
   2 ?    5.5   0.0     0.044        14       2      20 ..     707     725 ..     706     754 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00058
                 EEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEE CS
       NACHT   5 lqGeaGsGKTtLlqklalawaegklpqgafklvFf 39 
                 l G++GsGK+tL++ +  +  eg ++q ++k vF+
  CCE29069.1 467 LCGPNGSGKSTLMRAINNEQVEGFPKQSEVKTVFV 501
                 569*********************99999999997 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.044
                 CEEEEC-TTTCHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkl 20 
                  +++ G++G GK+tL+  l
  CCE29069.1 707 RIAVIGPNGAGKSTLINVL 725
                 5899***********9866 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.011       3.6       2      23 ..     462     486 ..     461     540 .. 0.75
   2 !    8.5   0.0    0.0046       1.5       3      22 ..     706     725 ..     704     772 .. 0.90
   3 ?   -2.2   0.0       8.8   2.9e+03     112     141 ..     944     973 ..     940     985 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.011
      AAA_24   2 klkiliyGpsgiGKTtlakel...g 23 
                 ++++ + Gp+g+GK+tl++ +   +
  CCE29069.1 462 GQRYGLCGPNGSGKSTLMRAInneQ 486
                 678999************9885440 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0046
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                  +i+++Gp+g+GK+tl++ l
  CCE29069.1 706 SRIAVIGPNGAGKSTLINVL 725
                 589*************9866 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 8.8
      AAA_24 112 rrllkklqelrknvifiahektrkdedpeg 141
                 + l k+l+++ + vi+i h+ + + + +e+
  CCE29069.1 944 GALSKALKKFEGGVIIITHSAEFTKDLTEE 973
                 5677889999999******99988877755 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3       3.9   1.3e+03     162     201 ..      25      64 ..       3      72 .. 0.69
   2 ?   -1.6   0.0         7   2.3e+03     106     146 ..     177     218 ..     150     276 .. 0.72
   3 ?    5.0   0.0      0.07        23      28      50 ..     467     490 ..     461     501 .. 0.77
   4 !   10.0   0.0    0.0021      0.69      24      48 ..     706     730 ..     697     737 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 3.9
       DUF87 162 nqaiarlldkledllrkggsfsnsstdliallleklekeg 201
                    i++ +++l ++++ ++++++ +t++i++l + l +++
  CCE29069.1  25 AADIKESSNQLASFINGRIEDQDVPTKIIDNLKKSLANKK 64 
                 3345666788888888888888889999888877776665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 7
       DUF87 106 leeddkpaaavqrsvleealdqaka.keekeklssdepvekl 146
                 +++  ++ ++++++v e+a++++++  +++   ++d+++++l
  CCE29069.1 177 IPVVSEAMWDTKKEVKERAYQTMEQiCQLIVNKDIDRFIPEL 218
                 333344677777777777777777554444444444444444 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.07
       DUF87  28 ilgsTGsGKSntvavLleelle.k 50 
                   g  GsGKS++++ + +e +e +
  CCE29069.1 467 LCGPNGSGKSTLMRAINNEQVEgF 490
                 56677***********99988762 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.0021
       DUF87  24 rHlAilgsTGsGKSntvavLleell 48 
                  ++A++g  G+GKS+++ vL  el+
  CCE29069.1 706 SRIAVIGPNGAGKSTLINVLTGELI 730
                 689******************9998 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0     0.009       2.9       7      59 ..     467     521 ..     462     540 .. 0.66
   2 ?    6.7   0.0     0.021       6.9       5      41 ..     708     750 ..     705     797 .. 0.73
   3 ?   -1.4   0.0       6.7   2.2e+03      63     102 ..     924     965 ..     889     975 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.009
      AAA_14   7 itGaRrvGKTtllkqlikell..vkkesilyinldderdkkladpekllelilek 59 
                 + G+  +GK+tl++ + +e+    +k+s +   + ++++++++++ + +e  ++k
  CCE29069.1 467 LCGPNGSGKSTLMRAINNEQVegFPKQSEVKTVFVEHDLDSADTEMTTIEWTMKK 521
                 789************9999999955555555555555554433333344444444 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.021
      AAA_14   5 lvitGaRrvGKTtllkqlikell......vkkesilyinldde 41 
                 +++ G+  +GK+tl++ l  el+       ++e+i    ++++
  CCE29069.1 708 IAVIGPNGAGKSTLINVLTGELIptkgeiYQHENIRIAYIKQH 750
                 6799*************99999977777644444444334443 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 6.7
      AAA_14  63 ekktylflDEiqev..pewekalkslvdegknldvivtGSns 102
                 ++ ++++lDE  ++  ++   al + +++ + + +i+t S+ 
  CCE29069.1 924 QRPHLIVLDEPTNYldRDSLGALSKALKKFEGGVIIITHSAE 965
                 5778999***99986655666777777777777888887765 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1         2   6.4e+02     109     151 ..     170     212 ..     154     228 .. 0.78
   2 !    7.3   0.0    0.0099       3.2       4      23 ..     466     485 ..     463     540 .. 0.76
   3 ?    6.0   0.0     0.024       7.9       4      21 ..     709     726 ..     706     765 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 2
                 CCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HH CS
        cobW 109 dltldavvavvDaknleaeeekieekaedqlaaadllvlnKtD 151
                 ++++  ++ vv+ + +++++e +e+ ++ + + + l+v   +D
  CCE29069.1 170 AYRVPDLIPVVSEAMWDTKKEVKERAYQTMEQICQLIVNKDID 212
                 6777888999999999888888888888888888877655466 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0099
                 EEEESTTCCHHHHHHHHHCT CS
        cobW   4 vltGflGsGKTtLlnhllen 23 
                 +l+G+ GsGK+tL++++ ++
  CCE29069.1 466 GLCGPNGSGKSTLMRAINNE 485
                 799***********998733 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.024
                 EEEESTTCCHHHHHHHHH CS
        cobW   4 vltGflGsGKTtLlnhll 21 
                  + G+ G+GK+tL+n l+
  CCE29069.1 709 AVIGPNGAGKSTLINVLT 726
                 6889***********887 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0094         3      22      40 ..     466     484 ..     455     523 .. 0.87
   2 ?    6.6   0.0     0.018       5.8      22      42 ..     709     730 ..     694     792 .. 0.82
   3 ?   -1.1   0.0       4.1   1.3e+03      82     120 ..     919     958 ..     885     968 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0094
      AAA_30  22 vltGpAGtGKttalkalre 40 
                  l Gp G+GK+t+++a+++
  CCE29069.1 466 GLCGPNGSGKSTLMRAINN 484
                 578*************954 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.018
      AAA_30  22 vltGpAGtGKttalkal.reaw 42 
                 ++ Gp G+GK+t++++l  e++
  CCE29069.1 709 AVIGPNGAGKSTLINVLtGELI 730
                 688************9944555 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 4.1
      AAA_30  82 grarlepgtllivDEagmv.dtkqlaallkaaekagakvi 120
                 ++ ++++ +l++ DE     d ++l al ka++k +  vi
  CCE29069.1 919 AACSWQRPHLIVLDEPTNYlDRDSLGALSKALKKFEGGVI 958
                 445678889******6654399999999999988554444 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.015         5      47      74 ..     464     491 ..     448     527 .. 0.73
   2 !    8.6   0.0    0.0051       1.7      50      90 ..     710     750 ..     700     796 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.015
       Rad17  47 iLLisGPsGCgkstvvkvLskelgiklr 74 
                    ++GP G gkst ++ +  e +  + 
  CCE29069.1 464 RYGLCGPNGSGKSTLMRAINNEQVEGFP 491
                 5569*************99999876654 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0051
       Rad17  50 isGPsGCgkstvvkvLskelgiklrewlnpvslkepdnqks 90 
                 + GP G gkst ++vL+ el +   e     +++ +  ++ 
  CCE29069.1 710 VIGPNGAGKSTLINVLTGELIPTKGEIYQHENIRIAYIKQH 750
                 67*****************9988777766666665555555 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.99   3.2e+02     143     172 ..     175     204 ..     155     221 .. 0.79
   2 ?    4.0   0.0      0.08        26       9      33 ..     467     491 ..     465     529 .. 0.70
   3 !    7.6   0.0    0.0064       2.1       7      34 ..     708     735 ..     704     760 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.99
                 -EEEEESSGGGS-HHHHHHHHHHHHHHHHH CS
      Septin 143 nliPviaKaDtltkeElkefKkkireelee 172
                  liPv++ a   tk+E+ke   + +e++ +
  CCE29069.1 175 DLIPVVSEAMWDTKKEVKERAYQTMEQICQ 204
                 79***************9988777777654 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.08
                 EEEBTTSSCCCCCCTTSSSS----- CS
      Septin   9 vvGesglGkttlintlfetdlieee 33 
                 ++G +g Gk+tl++++ ++++    
  CCE29069.1 467 LCGPNGSGKSTLMRAINNEQVEGFP 491
                 69*************9988876652 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0064
                 EEEEEBTTSSCCCCCCTTSSSS------ CS
      Septin   7 lmvvGesglGkttlintlfetdlieeek 34 
                 + v+G +g Gk+tlin l  + + ++ +
  CCE29069.1 708 IAVIGPNGAGKSTLINVLTGELIPTKGE 735
                 679*************998765554433 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.25        82      62      82 ..     571     591 ..     542     597 .. 0.78
   2 !    8.9   0.0    0.0052       1.7      27      89 ..     902     951 ..     883     952 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.25
     SbcCD_C  62 palrlvfLDEAFsklDeesia 82 
                 +a+++++LDE  + lD ++++
  CCE29069.1 571 EAPDILLLDEPTNHLDVKNVK 591
                 46899***********99976 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0052
     SbcCD_C  27 srssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 ++++++lSGG++   + ++la    a  ++      ++ l++LDE  + lD +s+ +l ++l+
  CCE29069.1 902 HSRMRGLSGGQR---VKTVLA----ACSWQ------RPHLIVLDEPTNYLDRDSLGALSKALK 951
                 567778888888...444444....33444......689*****************9999987 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.23        74      80     130 ..      51     101 ..      42     122 .. 0.80
   2 !    8.9   0.1    0.0045       1.5      39     129 ..     134     222 ..     126     252 .. 0.80
   3 ?    0.7   0.0       1.5   4.8e+02      39     114 ..     252     329 ..     241     333 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.23
       ParcG  80 klilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvln 130
                 k+i  lk+ L +++++v   +  v  + + +++ + ++  py+  lLp + 
  CCE29069.1  51 KIIDNLKKSLANKKDAVAREQACVAIEAIASHSEVAANVEPYLVVLLPSVL 101
                 778899****999999987766655566699999*************9876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0045
       ParcG  39 lLplffdGlretkhpyrflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvl 129
                  Lp +++ +r  ++  + +a   ++d+l +++  ++ + +p li  + ea+  +++ev e+a ++++++  ++ ++ + +  ++ +l++ +
  CCE29069.1 134 ALPAIMESIRTAQKWPEKMAALDFIDVLIKTAPAQLAYRVPDLIPVVSEAMWDTKKEVKERAYQTMEQI--CQLIVNKDIDRFIPELIKCI 222
                 6888888888877766677777788888888***********************************999..66666666666666666555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 1.5
       ParcG  39 lLplffdGlretkhpyrflategikdllea.ageekilpvlpklilplkeaLnt.rdeeviesaLkvlqklvkaseli 114
                 ++pl+  Gl+e +   +  a   + ++ +  +  + + p lpk++ +l+++ ++  d+e  e++ ++l  + ++++++
  CCE29069.1 252 MVPLLDRGLAERETAIKRKAAVIVDNMCKLvDDPNIVAPFLPKMMPGLQKNYDNlADPEAREKTKQALDTITRVGNVV 329
                 567777899999999998888888888887566777889999999999988854267777777777777666666665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0098       3.2      25      44 ..     467     486 ..     455     545 .. 0.77
   2 ?    4.9   0.0     0.067        22      24      46 ..     709     731 ..     700     809 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0098
    ATPase_2  25 iYGpegsGKtaLlkeiienl 44 
                 + Gp gsGK++L++ i +++
  CCE29069.1 467 LCGPNGSGKSTLMRAINNEQ 486
                 56************987765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.067
    ATPase_2  24 fiYGpegsGKtaLlkeiienled 46 
                  + Gp g GK++L++ +  +l  
  CCE29069.1 709 AVIGPNGAGKSTLINVLTGELIP 731
                 577************98877733 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0012      0.38       3      54 ..     466     518 ..     465     540 .. 0.78
   2 ?    2.8   0.0      0.25        82       2      24 ..     708     730 ..     707     777 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0012
         PRK   3 gvagsSGaGkttvarklek.ifgrekvkaaeiegdsflrldraekdleleerk 54 
                 g++g+ G+Gk+t++r++++  +++  +++ + +  +++ ld+a+ ++++ e  
  CCE29069.1 466 GLCGPNGSGKSTLMRAINNeQVEGFPKQSEVKTVFVEHDLDSADTEMTTIEWT 518
                 89***************862566667777777888999999998888766554 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.25
         PRK   2 IgvagsSGaGkttvarklekifg 24 
                 I+v g+ GaGk+t+ + l+  + 
  CCE29069.1 708 IAVIGPNGAGKSTLINVLTGELI 730
                 99***********9998875443 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.028       9.1       4      40 ..     467     504 ..     464     529 .. 0.70
   2 ?    6.8   0.0     0.024       7.7       1      23 [.     707     729 ..     707     771 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.028
                 EESSTTSSHHHHHHCHCT-CCC-E.EETTTTEEEEEEE CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsek.ekstigvdfltke 40 
                 l+G +g+GK++l++ + +++++   ++s +   f++++
  CCE29069.1 467 LCGPNGSGKSTLMRAINNEQVEGFpKQSEVKTVFVEHD 504
                 79**************9999975413334444444444 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.024
                 EEEEESSTTSSHHHHHHCHCT-C CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedk 23 
                 ++ ++G +g+GK++l++ ++ + 
  CCE29069.1 707 RIAVIGPNGAGKSTLINVLTGEL 729
                 5899************9988654 PP

>> Transglut_prok  Microbial transglutaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   0.00029     0.094     209     250 ..      32      73 ..      18      83 .. 0.87
   2 ?    1.9   0.1      0.34   1.1e+02     203     249 ..     487     534 ..     479     540 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00029
  Transglut_prok 209 arevasvmnkalenahdeeayldnlkkelankndallnedar 250
                     + ++as++n  +e+    +  +dnlkk lank+da+ +e+a 
      CCE29069.1  32 SNQLASFINGRIEDQDVPTKIIDNLKKSLANKKDAVAREQAC 73 
                     5689**********************************9986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.34
  Transglut_prok 203 ekgfkrarevasv.mnkalenahdeeayldnlkkelankndallneda 249
                       gf +  ev +v +++ l+ a  e + ++   k+la+ n a  ++d 
      CCE29069.1 487 VEGFPKQSEVKTVfVEHDLDSADTEMTTIEWTMKKLAEANVATTQDDV 534
                     579999999987626899************************999986 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.024       7.8       2      17 ..     468     483 ..     467     499 .. 0.90
   2 ?    6.4   0.0     0.021       6.8       1      17 [.     710     726 ..     710     742 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.024
  ATP_bind_1   2 vGpaGsGKttfvgals 17 
                 +Gp GsGK+t+++a++
  CCE29069.1 468 CGPNGSGKSTLMRAIN 483
                 7***********9986 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.021
  ATP_bind_1   1 vvGpaGsGKttfvgals 17 
                 v+Gp G+GK+t+++ l+
  CCE29069.1 710 VIGPNGAGKSTLINVLT 726
                 89***********9875 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00099      0.32      24      49 ..     466     489 ..     454     539 .. 0.81
   2 ?    2.9   0.0      0.16        52      16      38 ..     702     723 ..     691     739 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00099
                 EEEESTTSSHHHHHHHHCCSHCCCCC CS
      NB-ARC  24 alvGmgGvGKttlakqilnksdeveg 49 
                 +l G  G+GK+tl++ i+n+  +veg
  CCE29069.1 466 GLCGPNGSGKSTLMRAINNE--QVEG 489
                 689****************9..5554 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
                 TTSCSEEEEEEESTTSSHHHHHH CS
      NB-ARC  16 delqslvvalvGmgGvGKttlak 38 
                 ++l+   +a+ G  G GK+tl++
  CCE29069.1 702 CSLG-SRIAVIGPNGAGKSTLIN 723
                 5555.5689************86 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0025       0.8       1      33 [.     469     506 ..     469     514 .. 0.83
   2 ?    2.8   0.0      0.27        88       1      19 [.     712     730 ..     712     737 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0025
      CLP1_P   1 GpkdsGKSTlarlLlNyal.....rkgrkpvyvDlDvG 33 
                 Gp+ sGKSTl+r + N+ +     +++ k+v+v+ D+ 
  CCE29069.1 469 GPNGSGKSTLMRAINNEQVegfpkQSEVKTVFVEHDLD 506
                 899***************97776556678889988865 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.27
      CLP1_P   1 GpkdsGKSTlarlLlNyal 19 
                 Gp+ +GKSTl+ +L  +++
  CCE29069.1 712 GPNGAGKSTLINVLTGELI 730
                 899***********99887 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.7      0.38   1.2e+02     192     254 ..      10      74 ..       3      84 .. 0.66
   2 ?    8.9   0.0    0.0022      0.73     330     423 .]     131     221 ..     129     221 .. 0.91
   3 ?   -1.1   0.0       2.3   7.6e+02     366     420 ..     243     299 ..     241     302 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.38
     MMS19_C 192 ellnellellaseaespflrlaylrllallvNKflkdedlse.lldellesieeslie..aedsqe 254
                 ++l+el++ +++ +++    +  + +la+++N +++d+d+++ ++d l++s+ +++++   e+ + 
  CCE29069.1  10 KVLDELFQ-KLTVSKEAADIKESSNQLASFINGRIEDQDVPTkIIDNLKKSLANKKDAvaREQACV 74 
                 67888888.55555666666666778***********77765156777777766666654444444 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0022
     MMS19_C 330 Fstvlpklvegfks.sdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksileespslvsehlssLvprLLkl 423
                 ++  lp ++e++++ ++  +k + L  +  l+k+ P +l     p+L+P++ +a+  +++evk  + +t + i++    +v++ ++  +p L+k+
  CCE29069.1 131 CKAALPAIMESIRTaQKWPEKMAALDFIDVLIKTAPAQLA-YRVPDLIPVVSEAMWDTKKEVKERAYQTMEQICQ---LIVNKDIDRFIPELIKC 221
                 6789**********88889999999999999999999976.579***********9999***************9...69999999999999986 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.3
     MMS19_C 366 slllpeLptLlPlLlqaLdlpdaevkastLetlksile..espslvsehlssLvprL 420
                 ++  p L  ++PlL ++L+  ++++k+ +  ++ ++++  ++p++v+++l +  p L
  CCE29069.1 243 EVQEPTLALMVPLLDRGLAERETAIKRKAAVIVDNMCKlvDDPNIVAPFLPKMMPGL 299
                 567788999999999999999999999999999999998888999999998888877 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0      0.01       3.3      29      57 ..     458     486 ..     451     537 .. 0.69
   2 ?    5.0   0.0     0.048        16      33      58 ..     705     730 ..     698     749 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.01
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkl 57 
                  lk+++   l+Gp G+GK+++++ + ++ 
  CCE29069.1 458 RLKRGQRYGLCGPNGSGKSTLMRAINNEQ 486
                 5678888899***********99865543 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.048
       AAA_7  33 kkpvllvGptGtGKtviikdllkkld 58 
                 +  + ++Gp G GK+++i+ l+ +l 
  CCE29069.1 705 GSRIAVIGPNGAGKSTLINVLTGELI 730
                 567889************99877664 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.015       4.9      46      73 ..     461     488 ..     451     527 .. 0.83
   2 ?    4.5   0.0     0.078        25      49      72 ..     707     730 ..     684     756 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.015
   IstB_IS21  46 kkenivllGpsGvGKshlaialgveavr 73 
                 + +   l+Gp G GKs l  a+  e v+
  CCE29069.1 461 RGQRYGLCGPNGSGKSTLMRAINNEQVE 488
                 5667779***************999886 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.078
   IstB_IS21  49 nivllGpsGvGKshlaialgveav 72 
                  i+++Gp G+GKs l   l  e +
  CCE29069.1 707 RIAVIGPNGAGKSTLINVLTGELI 730
                 689**********99988877766 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.037        12      12      38 ..     460     486 ..     455     530 .. 0.88
   2 ?    6.5   0.0     0.018       5.8       5      35 ..     696     726 ..     693     807 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.037
                  BTT-EEEEEESTTSSHHHHHHHHHHHS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  12 vqGqrtlipgafgvGktvisqslskqs 38 
                   +Gqr ++ g +g Gk+++++++ +++
   CCE29069.1 460 KRGQRYGLCGPNGSGKSTLMRAINNEQ 486
                  69******************9998874 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.018
                  HHHHS-EBTT-EEEEEESTTSSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   5 lDalfpivqGqrtlipgafgvGktvisqsls 35 
                   D  f +  G r++++g +g Gk+++++ l+
   CCE29069.1 696 ADITFQCSLGSRIAVIGPNGAGKSTLINVLT 726
                  58999*********************98776 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.073        24     135     164 ..     468     502 ..     455     539 .. 0.65
   2 ?    7.2   0.0    0.0073       2.4     113     164 ..     690     740 ..     671     764 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.073
       T2SSE 135 sGgTgsGKttllyallke....inks.derivtvE 164
                  G+ gsGK+tl+ a+ +e    ++k+ + + v vE
  CCE29069.1 468 CGPNGSGKSTLMRAINNEqvegFPKQsEVKTVFVE 502
                 7**********977654411114444455555565 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0073
       T2SSE 113 alkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvE 164
                 ++k++ia++  +  +    i v G+ g GK+tl+++l  e+  ++ +i   E
  CCE29069.1 690 TTKPQIADITFQC-SLGSRIAVIGPNGAGKSTLINVLTGELIPTKGEIYQHE 740
                 5555566555555.555678899**************999877777776555 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.027       8.7       8      58 ..     467     518 ..     464     537 .. 0.77
   2 ?    4.8   0.0     0.071        23       6      27 ..     708     729 ..     705     749 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.027
  Ploopntkinase3   8 lvGqPGaGkstlmaeltkgfdrskveqee.etvphdvlvdrttGevvgaelG 58 
                     l G  G+Gkstlm ++ +  +    +q+e +tv  ++ +d ++ e+ ++e  
      CCE29069.1 467 LCGPNGSGKSTLMRAINNEQVEGFPKQSEvKTVFVEHDLDSADTEMTTIEWT 518
                     67889********999877666555545557787777788888887777755 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.071
  Ploopntkinase3   6 iylvGqPGaGkstlmaeltkgf 27 
                     i ++G  GaGkstl+  lt  +
      CCE29069.1 708 IAVIGPNGAGKSTLINVLTGEL 729
                     6789*************99765 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0044       1.4      93     153 ..     468     533 ..     465     540 .. 0.69
   2 ?    2.1   0.0      0.21        68      90     113 ..     709     730 ..     664     737 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0044
  Adeno_IVa2  93 yGPtGsGksqllrnlissklisPiPe....tvifitPekdmipPeelk.aWelq.lvegnyekredG 153
                  GP GsGks l+r++  ++ ++  P       +f+  + d    e ++  W ++ l e+n ++ +d 
  CCE29069.1 468 CGPNGSGKSTLMRAI-NNEQVEGFPKqsevKTVFVEHDLDSADTEMTTiEWTMKkLAEANVATTQDD 533
                 69***********96.556666665422122467777776665554442699954999999999887 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.21
  Adeno_IVa2  90 GviyGPtGsGksqllrnlisskli 113
                  v  GP G+Gks l+   ++ +li
  CCE29069.1 709 AV-IGPNGAGKSTLINV-LTGELI 730
                 44.5**********955.455555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.17        55      31      50 ..     460     479 ..     455     540 .. 0.78
   2 ?    5.8   0.0     0.028         9      32      54 ..     704     726 ..     680     797 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.17
      AAA_25  31 pagelallaGapgtGKttla 50 
                  +g    l+G+ g+GK+tl 
  CCE29069.1 460 KRGQRYGLCGPNGSGKSTLM 479
                 66777779**********97 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.028
      AAA_25  32 agelallaGapgtGKttlaldla 54 
                 +g+ ++++G+ g+GK+tl   l 
  CCE29069.1 704 LGSRIAVIGPNGAGKSTLINVLT 726
                 69999************986665 PP

>> RPN6_C_helix  26S proteasome subunit RPN6 C-terminal helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00029     0.094       8      20 ..     318     330 ..     317     331 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00029
  RPN6_C_helix   8 ALeTIknmgkVVD 20 
                   AL+TI  +g+VVD
    CCE29069.1 318 ALDTITRVGNVVD 330
                   9************ PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.081        26      20      39 ..     466     485 ..     450     496 .. 0.84
   2 ?    4.9   0.0     0.043        14      22      43 ..     711     732 ..     706     738 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.081
  Zeta_toxin  20 llgGqpGAGKselaellkde 39 
                  l G  G+GKs+l++++++e
  CCE29069.1 466 GLCGPNGSGKSTLMRAINNE 485
                 578999**********9987 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.043
  Zeta_toxin  22 gGqpGAGKselaellkdelerq 43 
                  G  GAGKs+l++ l+ el ++
  CCE29069.1 711 IGPNGAGKSTLINVLTGELIPT 732
                 5889***********9998744 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.057        19       4      20 ..     468     484 ..     466     496 .. 0.88
   2 ?    5.4   0.0      0.04        13       1      22 [.     708     729 ..     708     779 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.057
                     E-STTSSHHHHHHHHHH CS
  Cytidylate_kin   4 DGPagsGKssvaralae 20 
                      GP gsGKs++ ra+ +
      CCE29069.1 468 CGPNGSGKSTLMRAINN 484
                     59***********9976 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.04
                     EEEE-STTSSHHHHHHHHHHHH CS
  Cytidylate_kin   1 iaiDGPagsGKssvaralaekl 22 
                     ia+ GP g+GKs++   l+ +l
      CCE29069.1 708 IAVIGPNGAGKSTLINVLTGEL 729
                     8999**********99987765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.23        76      27      43 ..     467     483 ..     462     517 .. 0.89
   2 ?    6.4   0.0     0.015         5      25      64 ..     708     748 ..     699     763 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.23
  Mg_chelatase  27 lvGppGsGKtmlakrlp 43 
                   l+Gp GsGK+ l ++++
    CCE29069.1 467 LCGPNGSGKSTLMRAIN 483
                   79**********99886 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.015
  Mg_chelatase  25 lllvGppGsGKtmlakrlps.llpplseeealevakiasva 64 
                   + ++Gp G+GK+ l++ l++ l+p   e  ++e  +ia ++
    CCE29069.1 708 IAVIGPNGAGKSTLINVLTGeLIPTKGEIYQHENIRIAYIK 748
                   6789**************97355655555555555555444 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.084        27       3      22 ..     466     485 ..     464     497 .. 0.83
   2 ?    5.2   0.1     0.055        18       1      23 [.     707     729 ..     707     738 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.084
                 EEE--TTSSHHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlel 22 
                  + Gp G+GK+Tl++ + ++
  CCE29069.1 466 GLCGPNGSGKSTLMRAINNE 485
                 689**********9988664 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.055
                 EEEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlell 23 
                 ++++ Gp G GK+Tl++ ++ +l
  CCE29069.1 707 RIAVIGPNGAGKSTLINVLTGEL 729
                 58899***********9887665 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.5       1.5     5e+02     302     355 ..      15      71 ..       3     121 .. 0.53
   2 ?    6.8   0.0    0.0071       2.3      23      47 ..     469     493 ..     462     531 .. 0.76
   3 ?    3.4   0.0     0.071        23      22      38 ..     711     727 ..     703     829 .. 0.82
   4 ?    0.1   0.0      0.73   2.4e+02     529     580 ..     928     973 ..     922     993 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.5
      AAA_13 302 lleklkavsdeasensafeedkeelka....eaealeeqLkglqraleaKrkepfksv 355
                 l++kl +vs+ea   +++ ++ + + +      ++ ++ +++l++ l +K++ ++++ 
  CCE29069.1  15 LFQKL-TVSKEAADIKESSNQLASFINgrieDQDVPTKIIDNLKKSLANKKDAVAREQ 71 
                 22333.1222222222222222222112221233344445555555555555544433 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0071
      AAA_13  23 GwNGaGKTtLSrllrslelgetepk 47 
                 G NG+GK+tL r++++ + +   ++
  CCE29069.1 469 GPNGSGKSTLMRAINNEQVEGFPKQ 493
                 99************99665544433 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.071
      AAA_13  22 YGwNGaGKTtLSrllrs 38 
                  G NGaGK+tL ++l  
  CCE29069.1 711 IGPNGAGKSTLINVLTG 727
                 49*********999876 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.73
      AAA_13 529 ivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                  +v+D P   LD +sl   +  +k+          ++i TH+ ef k ++++
  CCE29069.1 928 LIVLDEPTNYLDRDSLGALSKALKKFE------GGVIIITHSAEFTKDLTEE 973
                 677777888888887766666665554......679***********99875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.18        58      19      41 ..     462     484 ..     444     494 .. 0.79
   2 ?   -0.4   0.1       3.2   1.1e+03      78     102 ..     494     520 ..     490     538 .. 0.63
   3 ?    4.1   0.0      0.13        43      18      43 ..     704     729 ..     689     771 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.18
                 TEEEEEEESTTSSHHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglak 41 
                 g+   L G+ G+GK+tl+r++ +
  CCE29069.1 462 GQRYGLCGPNGSGKSTLMRAINN 484
                 5567899************9965 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 3.2
                 HHHHHCTTCCCCS.TS.CEEEEETGGG CS
        TsaE  78 eeleelgleeyle.ee.avvlvEWpek 102
                 +e++++ +e  l+ ++ +++ +EW  k
  CCE29069.1 494 SEVKTVFVEHDLDsADtEMTTIEWTMK 520
                 5666666666666433479*****988 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.13
                 HTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  18 lgdvilLeGdLGaGKTtlvrglakal 43 
                 lg+ i+  G+ GaGK+tl+  l  +l
  CCE29069.1 704 LGSRIAVIGPNGAGKSTLINVLTGEL 729
                 3667999***********99887665 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.034        11      23      55 .]      46      79 ..      36      79 .. 0.86
   2 ?    3.8   0.2      0.27        87       7      55 .]      75     122 ..      75     122 .. 0.85
   3 ?    0.8   0.1       2.2   7.2e+02       3      31 ..     111     140 ..     109     143 .. 0.80
   4 ?   -0.6   0.0         6     2e+03       3      48 ..     150     195 ..     148     202 .. 0.74
   5 ?    0.7   0.0       2.4     8e+02      19      34 ..     285     300 ..     281     315 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.034
     HEAT_EZ 23 qplvpeilpaLlalLnddsdeV.RaaAagaLgnl 55
                q++ ++i++ L + L +++d+V R++A+ a++++
  CCE29069.1 46 QDVPTKIIDNLKKSLANKKDAVaREQACVAIEAI 79
                6667788889999999***************986 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.27
     HEAT_EZ   7 AawaLGr...laggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55 
                 A+ a+++   +a++  ++l  l+p +l+a +     d+  +V++aA  a +++
  CCE29069.1  75 AIEAIAShseVAANVEPYLVVLLPSVLAAVG-----DKItAVKTAASAAVSAI 122
                 5678888888888888888889999******.....9**999****9998875 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 2.2
     HEAT_EZ   3 vRraAawaLGr.laggepellqplvpeilp 31 
                 v+ aA +a+++ + + ++++++ ++p+i+ 
  CCE29069.1 111 VKTAASAAVSAiAGAINGNACKAALPAIME 140
                 777888888887778899999999999986 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 6
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaA 48 
                 ++ aA+  +  l   +p +l+  vp+++p    ++ d ++eV++ A
  CCE29069.1 150 EKMAALDFIDVLIKTAPAQLAYRVPDLIPVVSEAMWDTKKEVKERA 195
                 555666666555556788899999****999999988888998776 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 2.4
     HEAT_EZ  19 pellqplvpeilpaLl 34 
                 p+ ++p++p+++p L 
  CCE29069.1 285 PNIVAPFLPKMMPGLQ 300
                 78899*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1055 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1177  (0.0656478); expected 358.6 (0.02)
Passed bias filter:                      809  (0.0451224); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        55  (0.00306766); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              55  [number of targets reported over threshold]
# CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.46
# Mc/sec: 6909.66
//
Query:       CCE29070.1  [L=629]
Description: probable glutamine-tRNA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.3e-103  346.2   0.1   2.2e-103  345.5   0.1    1.4  1  tRNA-synt_1c    tRNA synthetases class I (E and Q), catalytic
    6.1e-32  110.9   0.0      2e-31  109.2   0.0    1.9  1  tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codo


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.5   0.1  2.4e-107  2.2e-103       2     313 ..      91     401 ..      90     402 .. 0.97

  Alignments for each domain:
  == domain 1  score: 345.5 bits;  conditional E-value: 2.4e-107
                   -EEEE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE- CS
  tRNA-synt_1c   2 VrtRfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvce 98 
                   V+tRf+PeP+GyLHiGhaka+ +n++fAk+++G ++lR++DT+pe+e+e+++++i +++ wlg+k+  k+ty+sd f++l+++ae+Li++GkAYvc 
    CCE29070.1  91 VVTRFPPEPNGYLHIGHAKAIAVNFGFAKYHGGVCYLRFDDTNPEKEEEKYFTAIQDIITWLGFKP-CKITYSSDNFERLYQLAEKLISQGKAYVCA 186
                   99****************************************************************.99**************************** PP

                   STHHHHHHHHCCSS....HSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSS.GGGSSTEEEEEEESGGGSBTTTBTSTSEEE-HHHH CS
  tRNA-synt_1c  99 ctkeeleeereeqe....klgskerdrydeenlklfeeemkkgkaegekavvRlkideess.vefrDlvrgriklepqeihdlvivksdiyPtYdfa 190
                   c ++ l+ +r+ ++    ++ +++ ++++++n++ f ++m++gk++ +++ +R+k+d      +++Dl ++rik +    h++++  ++iyPtYdf+
    CCE29070.1 187 CDENDLKLQRGGEKgatpRYRCQHAEQTVDDNMQKF-RDMREGKYKPREVFLRMKQDITDGnPQMWDLAAYRIKTDT--PHHRTGWDWKIYPTYDFT 280
                   **********9988888899999*************.9*******************88777************998..8***************** PP

                   HHHHHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHHHHH CS
  tRNA-synt_1c 191 vvidDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekerelft 287
                   ++++D+ e+ith+l+t+ef+ ++ +y wl + l+++ +p+++ey rlnl++++lSKRk+  lv+ek v++wdd+r+ +l ++rr+G++p ++ e+++
    CCE29070.1 281 HCLCDSFEGITHSLCTTEFILSRVSYEWLNKSLEVY-EPMQREYGRLNLTGTVLSKRKILKLVEEKIVRDWDDPRLYTLIGIRRRGVPPGAILEFVN 376
                   ************************************.************************************************************ PP

                   HHCCCSSS.EEEEHHHHHHHHHHHHH CS
  tRNA-synt_1c 288 reeliksfdlnresksleafdrkkLe 313
                   + +++++  +++ ++++e  +r +Le
    CCE29070.1 377 ELGVTTNI-TTIMIHKFEQSVRRYLE 401
                   ********.99999999998888876 PP

>> tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.0   2.2e-35     2e-31       2     157 ..     405     569 ..     404     573 .. 0.93

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 2.2e-35
  tRNA-synt_1c_C   2 pRymaVldpvkvtienlpegkeeelevplhpknpelgtrkvpfskeiyiereD........akrlkpgeevrLke.lynikveevekde.sgevt 86 
                     pR+m+Vldpv ++ie+    +   + +p+ pk+p++g+++v f+++iyi+r+D        ++rl+pg++v L +  y +k+++++kde +g+vt
      CCE29070.1 405 PRLMMVLDPVPLVIEDA---EASDVVLPFSPKDPKMGSHTVRFTPTIYIDRSDfrevdskdYFRLAPGKTVGLLNaPYPVKATSFTKDEaTGKVT 496
                     9**************55...4689*************************************************9966****************** PP

  tRNA-synt_1c_C  87 elkleydgesleearkkkgiihWvsaeeaveaevrlYdrLfkeee.de...dfl..lnpdslkvleeglaepalanl 157
                     e++  +d+e++    k k+ i+Wv +e + +aevr  + Lfk+e+ d+    fl  lnpds+ ++ ++++e+ + ++
      CCE29070.1 497 EIRGVFDKETK----KAKTYIQWVGTEGSKKAEVRIHNALFKSEKpDDaegGFLndLNPDSEVIYPDAVIESGFDEV 569
                     ********999....999************************7776666788889*******999******988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1144  (0.0638072); expected 358.6 (0.02)
Passed bias filter:                      780  (0.0435049); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 4396.64
//
Query:       CCE29071.1  [L=218]
Description: related to LRP16 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-41  141.7   0.0    1.4e-41  141.2   0.0    1.2  1  Macro     Macro domain


Domain annotation for each model (and alignments):
>> Macro  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   0.0   7.8e-46   1.4e-41       1     118 []      61     174 ..      61     174 .. 0.99

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 7.8e-46
                 EEEEETTSS-CSHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTSEEEEE-TTSSSSEEEEEESE-TTTSTSTTHHHHHHHHHHHHHHHHHHTT-SEEEE CS
       Macro   1 VnAaNsrllggggvagaihraagkalkeeckelekkqggcllGeavvtpaynlpakyvihtvgplftsskskeeeellakayknalelaeekgiksvaf 99 
                 VnAaN++llggggv+gaihraag++l+ ec+el    ggc +G+av+t++y+lpak+vihtvgp++++sk  e+e  l+++y+++l+la ++g+k++af
  CCE29071.1  61 VNAANNSLLGGGGVDGAIHRAAGPELLSECREL----GGCATGDAVLTKGYELPAKHVIHTVGPIYSKSKPLESERALRSCYEKSLRLASNEGLKTIAF 155
                 9********************************....99****************************99****************************** PP

                 E-TTSSTTSBTHHHHHHHH CS
       Macro 100 PaistGifgvpweeaarva 118
                  aistG++g+p ++aa+va
  CCE29071.1 156 SAISTGVYGYPGRDAAEVA 174
                 ****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1711.06
//
Query:       CCE29072.1  [L=636]
Description: related to YVC1-vacuolar cation channel [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-07   29.5  21.5    2.3e-06   27.1  21.5    2.0  1  Ion_trans    Ion transport protein
    4.4e-06   25.6  18.2    0.00032   19.5  19.1    2.5  2  PKD_channel  Polycystin cation channel


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1  21.5   2.5e-10   2.3e-06       7     244 ..     253     480 ..     247     481 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.5e-10
                 HHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH.........HHHH....... CS
   Ion_trans   7 filllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl.........vlse....... 89 
                 + l l++l++ ++a+++ +p+ el  + +e+  ++ft+ ++ + ++k++ +g+    r l+  wn++  +  ++  +sl            e       
  CCE29072.1 253 LLLSLVYLALYTIAINSVNPSGEL--DGAEVTLYLFTIGYICDEVMKVYKAGY----RILGF-WNVFNSILYSFLTVSLvfriigltaS--Egsdsreh 342
                 566778888888888888888444..79**********************999....43433.66666655555555554444444550..25556678 PP

                 .....HHHHHHHHHHHH.GGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHH CS
   Ion_trans  90 .....esllllsvlrlf.rvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnffta 182
                       ++l++ ++ ++ r+l  l  ++ ++    ++  l+ ++k+ + ++ ll+vv++ f  +++ l                         dn+   
  CCE29072.1 343 ysklsYNMLAFIAPMFWcRLLLYLDSFRFFGA---MLVVLKVMMKESVIFFALLIVVIIGFLQAFIGLD--------------------L-ADDNVAGD 417
                 88844334444444444455555555555555...6667888888877777777777777776666666....................1.12678889 PP

                 HHHHHHHHTTSSHHHHHHHHHHHS.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 183 llwlfrlmttegwgdilyatldek.....skvaliyfvifiilgsflllNlliaviadnfqeltere 244
                 +++++++mt      i++ ++ e      + +++i++ +f ++++++llN+lia+ ++++++++e++
  CCE29072.1 418 VMFIVESMTKA----IMQSPEFEGleafgPPWGIILYYCFTFVVMIILLNILIALYNSAYEDIYENA 480
                 99999999977....6666666666667***********************************9976 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.23   2.1e+03     182     239 ..      76     135 ..      73     140 .. 0.77
   2 !   19.5  19.1   3.5e-08   0.00032     211     425 ..     276     475 ..     249     476 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.23
                  E--TTSS-EEEEEEEEE------SHHHHHHHHHHHHHHHHHHH..HHHHHH--------- CS
  PKD_channel 182 EvpalGgvlpsvsvqsvkLlryvtklslflllievvfvvfvly..fvveeilkirkeras 239
                  E+ a+ ++ p+ ++ ++k ++ ++++    +   vv++++v +  f  e + +++ + ++
   CCE29072.1  76 EMKASRVTAPHSRIITHKVIQAAKEAGGPEYRGCVVYCLLVNQkwFKHEAVAELWDSDLH 135
                  888999999999999999999999999999998999998876533666666666666555 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 3.5e-08
                  HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSS----HHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 211 lllievvfvvfvlyfvveeilkirkerasylrsvwnlldlaivvlsvvlivlailrevlakkllkkveaekeefldFrevaqldqllriilavlvflt 308
                  l  +ev +++f + ++ +e++k+ k + + l  +wn+ + +++ + +v++v++i+     +       ++ e++          +l  ++la++  + 
   CCE29072.1 276 LDGAEVTLYLFTIGYICDEVMKVYKAGYRIL-GFWNVFNSILYSFLTVSLVFRIIGLTASEG-----SDSREHYS---------KLSYNMLAFIAPMF 358
                  55678999******************76555.7******************99986554443.....25666665.........4557999******* PP

                  HHGGGGG------------------------HHHHHHHHHHHHHHHH...HHSSSS-STTSSHHHHHHHHHHHHTT---HHHHHHH-TTHHHHHHHHH CS
  PKD_channel 309 tlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgv...llfGtqasnfsnlvksiltlfrlilgdfqytelesgnrvLGpllllal 403
                  + +ll +l  ++ +  +  +l+  +k+ + f+ +++++++ + q+ +   l   + a +   +v+s+      i+++ +++ le  +   G++l+  +
   CCE29072.1 359 WCRLLLYLDSFRFFGAMLVVLKVMMKESVIFFALLIVVIIGFLQAFIgldLADDNVAGDVMFIVESMTKA---IMQSPEFEGLEAFGPPWGIILYYCF 453
                  *******998888888888888888876665555555566665554422344555566788888888887...************************* PP

                  HHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel 404 vflvifillnlflaiindsyee 425
                   f+v++illn+++a+ n++ye 
   CCE29072.1 454 TFVVMIILLNILIALYNSAYED 475
                  ********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 4760.87
//
Query:       CCE29073.1  [L=1007]
Description: related to TOB3 (member of AAA-ATPase family) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-15   56.3   0.0    9.3e-15   55.2   0.0    1.6  1  AAA       ATPase family associated with various cellular acti
     0.0053   17.0   2.9       0.12   12.7   0.3    3.1  3  AAA_22    AAA domain
     0.0062   16.5   0.0      0.014   15.4   0.0    1.6  1  AAA_5     AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.033   14.6   0.3       0.17   12.2   0.3    2.3  1  AAA_16    AAA ATPase domain
      0.038   13.7   0.0      0.086   12.5   0.0    1.5  1  AAA_30    AAA domain
       0.12   12.2   0.0       0.12   12.2   0.0    3.4  2  AAA_11    AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   3.1e-18   9.3e-15       2     127 ..     790     905 ..     789     909 .. 0.91

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 3.1e-18
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSS CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkke 100
                 +l+GppGtGKTl+a+ + + l+ +++  s+ el        e++++++++ + +     il++DE+d + ++r + ++ +++ +v+ +l++l+ ++   
  CCE29073.1 790 VLHGPPGTGKTLTAEGISELLQCPLYMASAGELG-TNPTTLEHELQKILDICHSWG--AILLLDEADVFLEKR-NMQDIHRNALVSIFLRQLEYFQG-- 882
                 69********************************.556788889999998887776..9**************.77899999**************9.. PP

                 STEEEEEEESSGGGSTHHHHSTTSSEE CS
         AAA 101 skvivigatnrpdkldpallrgRfdrk 127
                    i+ ++tnr++ +d+a+  +R+ + 
  CCE29073.1 883 ---ILFLTTNRVEAFDEAFQ-SRIHIA 905
                 ...99***************.999765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6   4.7e+03      79     106 ..     341     374 ..     307     387 .. 0.58
   2 !   12.7   0.3   3.9e-05      0.12       7      30 ..     788     811 ..     782     838 .. 0.70
   3 ?    3.9   0.2      0.02        58      71     112 ..     825     864 ..     812     893 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.6
      AAA_22  79 lealeqalrarav...ielliiDEaqhlr.s..e 106
                  ++l + + +      +++ ++DE  +l+ +   
  CCE29073.1 341 KSQLLRECLQDVIgnvRGVNLVDELPKLDpNllF 374
                 4444444444433455589999999988521333 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.9e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqld 30 
                 + v++G++GtGKT++++ + e l+
  CCE29073.1 788 VSVLHGPPGTGKTLTAEGISELLQ 811
                 679*************99888884 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.02
      AAA_22  71 erlsseellealeqalraravielliiDEaqh.lrseealeeL 112
                 ++ ++e+ l+++ + +++ ++  +l++DEa+  l ++++++++
  CCE29073.1 825 NPTTLEHELQKILDICHSWGA--ILLLDEADVfL-EKRNMQDI 864
                 355667777777777777777..********966.77777776 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.7e-06     0.014       3      30 ..     790     817 ..     789     851 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.7e-06
                 EEE--SSSSHHHHHHHGGGGBS--EEEE CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyv 30 
                 +L GppGtgK+  ae ++++l++++ + 
  CCE29073.1 790 VLHGPPGTGKTLTAEGISELLQCPLYMA 817
                 699******************9998764 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   5.8e-05      0.17      14      52 ..     774     844 ..     770     969 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.8e-05
      AAA_16  14 salervrsgrp..elvllsGesGvGKsslvrellralekd..............................g 52 
                 +++++v +g +   + +l+G++G+GK+  ++ + + l+                                g
  CCE29073.1 774 QTIDDVIQGKGkgLVSVLHGPPGTGKTLTAEGISELLQCPlymasagelgtnpttlehelqkildichswG 844
                 56677777777767889***********9988876444334444555555555555555555555555553 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.9e-05     0.086      17      42 ..     785     810 ..     774     815 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.9e-05
      AAA_30  17 gdrvavltGpAGtGKttalkalreaw 42 
                 + +v+vl+Gp+GtGKt + +++ e++
  CCE29073.1 785 KGLVSVLHGPPGTGKTLTAEGISELL 810
                 4579**************99999886 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -20.4  23.0         6   1.8e+04      89      89 ..     166     166 ..      22     438 .. 0.63
   2 ?   12.2   0.0   3.9e-05      0.12      18      39 ..     784     808 ..     769     839 .. 0.73

  Alignments for each domain:
  == domain 1  score: -20.4 bits;  conditional E-value: 6
      AAA_11  89 k 89 
                 k
  CCE29073.1 166 K 166
                 2 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.9e-05
      AAA_11  18 e...itliqGPPGtgKTktivells 39 
                 +   +++++GPPGtgKT t  ++ +
  CCE29073.1 784 GkglVSVLHGPPGTGKTLTAEGISE 808
                 3455899**********77655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.40
# Mc/sec: 7489.43
//
Query:       CCE29074.1  [L=372]
Description: uncharacterized protein CPUR_02765 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-14   55.0   0.0    2.7e-14   53.7   0.0    1.6  1  APH             Phosphotransferase enzyme family
    0.00025   20.0   0.0    0.00042   19.3   0.0    1.3  1  DUF1679         Protein of unknown function (DUF1679)
     0.0029   17.2   0.0     0.0046   16.6   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
       0.07   12.4   0.0       0.11   11.7   0.0    1.3  1  EcKinase        Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   6.1e-18   2.7e-14      40     208 ..     151     330 ..     133     345 .. 0.84

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 6.1e-18
                 HHHHHHHHHHTT-..B--B-CTTBS-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHHCH..-STTTB-SHHCHTCCHHHHHHCH CS
         APH  40 evallrlLakagv..pvPevlagdtddeeigllfalieyvpgrsllr...klsaaqlpellealgeflaalhqvd.paalpladflaqdlellrqlesa 132
                 e++ l++L+++ +  pvP+++          + f++ + +pg  l++   +l+++q++++  ++  +la+l +++ p+++ l d +    ++  ++ s+
  CCE29074.1 151 EHQTLTFLRENMPdfPVPRPHG---LVRLGIYCFLFTSHIPGMNLEDawpELDCSQKQDISCQIDVLLAELRSFPvPEHACLGDVA--GGACRDLRRSQ 244
                 89999****998899*******...77888889*************9999************************977766666666..67888888888 PP

                 HH.CCCGCCTCCHHHHHHHH........HHHHHHHH--SSS-EEEE-SS-SGGGEEEC....TTEEEEE---TT-EEEECCHHHHCC CS
         APH 133 ta.rllaselldlleeleeq........vlaalaallpgelptvllHgDlhpgNllvd..pddgrvtGviDfedaglgpplyDlavl 208
                 +   ++   + +  e++            +  l+ l+p + + v++HgD++p N++v+  ++ +rvt++iD+e++g  p  +D +  
  CCE29074.1 245 RVsTKPIKSVVE-FEDFIFKgsttatpiYIGLLRGLMPLSNKIVFTHGDIRPANIMVRrdDGTWRVTAIIDWETSGFYPEYWDAVKS 330
                 443333333333.55555559999999999999999999**************************************9999998765 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   9.3e-08   0.00042     267     310 ..     285     327 ..     277     339 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 9.3e-08
     DUF1679 267 kkvlvhgDlwsaNiLfseeeegklklkkviDyQlvslgnpaeDl 310
                 k v++hgD+  aNi+  + ++g   ++++iD+ +  + +   D 
  CCE29074.1 285 KIVFTHGDIRPANIMVRR-DDGTWRVTAIIDWETSGFYPEYWDA 327
                 679***************.899**********998777665555 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     1e-06    0.0046     142     182 ..     283     326 ..     249     336 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1e-06
                     GG-EEEE-S--SGGGEEE.-CTTE...EEE--GTT-EEEEHHHH CS
  Choline_kinase 142 espvvfcHnDlqegNillnkeekk...lvlIDFEYagynyrgfD 182
                      +++vf H D+ + Ni++  ++++     +ID+E +g+ +  +D
      CCE29074.1 283 SNKIVFTHGDIRPANIMVRRDDGTwrvTAIIDWETSGFYPEYWD 326
                     688***************666554221469******99888887 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.5e-05      0.11     215     251 ..     286     321 ..     269     339 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.5e-05
    EcKinase 215 nvlnHGDlwvnNimfkydeegepedvilvDFQlsryg 251
                  v++HGD+   Nim++ d+ g+   + ++D+ +s + 
  CCE29074.1 286 IVFTHGDIRPANIMVRRDD-GTWRVTAIIDWETSGFY 321
                 69**************985.5899999****887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2931.11
//
Query:       CCE29075.1  [L=229]
Description: uncharacterized protein CPUR_02766 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-20   72.1   0.0    1.4e-11   44.2   0.0    2.1  2  PIF1             PIF1-like helicase
    0.00022   21.0   0.1       0.12   12.0   0.2    2.4  2  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.028   14.8   0.0       0.04   14.3   0.0    1.5  1  AAA_16           AAA ATPase domain
      0.034   13.9   0.0      0.051   13.3   0.0    1.2  1  Sigma54_activat  Sigma-54 interaction domain
      0.075   13.0   0.1       0.12   12.4   0.1    1.3  1  ResIII           Type III restriction enzyme, res subunit
      0.078   13.4   0.0        0.1   13.1   0.0    1.4  1  AAA              ATPase family associated with various cellul
      0.083   11.8   0.0        0.1   11.5   0.0    1.1  1  AFG1_ATPase      AFG1-like ATPase


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.7e-09   4.3e-06       2      44 ..      82     125 ..      81     127 .. 0.89
   2 !   44.2   0.0   5.6e-15   1.4e-11     103     172 ..     127     188 ..     125     198 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.7e-09
                 --HHHHHHHHHH.......HCTS-EEEEESTTSSCHHHHHHHHH CS
        PIF1   2 LneeQkkvfdaiieavln.ekgklfFvtGsgGtgKtflwkallk 44 
                 L + Q+++fd+i+ av +  +   f+++G gGtgKtfl +a+++
  CCE29075.1  82 LKAGQQAAFDTITRAVATdPSTAHFYIQGPGGTGKTFLCEAIYT 125
                 7889***********998457789***************99985 PP

  == domain 2  score: 44.2 bits;  conditional E-value: 5.6e-15
                 -SEEEEECGGGSBHHHHHHHHHHHHHHCT-...-SCCCC-EEEEE--TTS-----SSSSS---BGC...C CS
        PIF1 103 tsliiwDEapmverecfealdrtlrdilkekeidkpFGGktvvlgGDfrQilPviekgsraeivaasike 172
                 + liiwDE+pm +++cfea+ r l d+  +++         v +gGDf Qil  ++kg+  eiv+a++ +
  CCE29075.1 127 AALIIWDEVPMQHKHCFEAVHRFLVDMPGTDD--------DVLFGGDFAQILAAVPKGTPGEIVHACLSA 188
                 579************************99866........8999**********************9975 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   4.8e-05      0.12       2      38 ..      82     123 ..      81     128 .. 0.68
   2 !    7.3   0.0    0.0014       3.5      89     136 ..     127     178 ..     121     192 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.8e-05
      AAA_30   2 lnaeQaaaveal....ltsgd.rvavltGpAGtGKttalkal 38 
                 l+a+Q+aa++++    +t++      ++Gp GtGKt++ +a+
  CCE29075.1  82 LKAGQQAAFDTItravATDPStAHFYIQGPGGTGKTFLCEAI 123
                 778888887654111145444146689**********99987 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0014
      AAA_30  89 gtllivDEagmvdtkqlaallkaaek...agakvilvGDerQ.lasVeaGgv 136
                 + l+i DE+ m   + ++a+ + + +   ++  v++ GD +Q la+V +G +
  CCE29075.1 127 AALIIWDEVPMQHKHCFEAVHRFLVDmpgTDDDVLFGGDFAQiLAAVPKGTP 178
                 479999******7666665555554422279***********6688877765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.6e-05      0.04      10      46 ..      91     125 ..      76     219 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
      AAA_16  10 eqLlsalervrsgrp..elvllsGesGvGKsslvrellr 46 
                 +++++a+      +p     ++ G+ G+GK+ l +++++
  CCE29075.1  91 DTITRAVA----TDPstAHFYIQGPGGTGKTFLCEAIYT 125
                 44444443....33334899**************99986 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     2e-05     0.051      11      44 ..      89     125 ..      82     149 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
                      HHHHHHHHCTSS...S-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat  11 lleqikkvaktd...lsvlitGesGtGKellaraihe 44 
                      ++++i+++++td   ++  i+G  GtGK++l +ai++
       CCE29075.1  89 AFDTITRAVATDpstAHFYIQGPGGTGKTFLCEAIYT 125
                      4444555554444449*******************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.6e-05      0.12       3      43 ..      81     122 ..      79     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.6e-05
                 EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHH CS
      ResIII   3 elreyQeeaienlleklks.krdkrglikmaTGtGKTlvaak 43 
                 +l+  Q+ a + +  ++       +++i+ + GtGKT+++ +
  CCE29075.1  81 KLKAGQQAAFDTITRAVATdPSTAHFYIQGPGGTGKTFLCEA 122
                 678899*****9998887535566*************98754 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.9e-05       0.1       2      22 ..     107     127 ..     106     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.9e-05
                 EEESSTTSSHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel 22 
                 ++ Gp GtGKT l++a+ + +
  CCE29075.1 107 YIQGPGGTGKTFLCEAIYTGA 127
                 678*************98765 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.9e-05       0.1      35      94 ..      81     135 ..      44     163 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.9e-05
  AFG1_ATPase  35 elaaqdlarkssalgklfgrkrksvepvrglYlwGgvGrGKtylmdlffeslpvekkrrv 94 
                  +l+a ++a++       ++r   +  ++   Y++G+ G GKt+l +  +  + +    +v
   CCE29075.1  81 KLKAGQQAAF----D-TITRAVATDPSTAHFYIQGPGGTGKTFLCEAIYTGAALIIWDEV 135
                  3333333333....2.333333344456679*****************987765444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1603.89
//
Query:       CCE29076.1  [L=86]
Description: uncharacterized protein CPUR_02767 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 696.29
//
Query:       CCE29077.1  [L=55]
Description: uncharacterized protein CPUR_02768 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 416.16
//
Query:       CCE29078.1  [L=178]
Description: uncharacterized protein CPUR_02769 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1389.41
//
Query:       CCE29079.1  [L=145]
Description: uncharacterized protein CPUR_02770 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-05   24.6   0.0      3e-05   24.1   0.0    1.3  1  PAC3      Proteasome assembly chaperone 3


Domain annotation for each model (and alignments):
>> PAC3  Proteasome assembly chaperone 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.7e-09     3e-05       1      74 [.      38     130 ..      38     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.7e-09
        PAC3   1 vviTqigkiGtlvsvtpdsksdelsep.............tytvrvllGk..dddll..rvyarqLiekis..leksekplllalgLkdaske 74 
                 ++i+q g+++++++v   s +d l+e               +t+++llG+  dd ++  ++ya q++ +is    +  + l+l+lgL + + e
  CCE29079.1  38 ITISQEGRLAQWIQVPLISPPDGLVELplpstgqgvlpltHLTATTLLGSggDDRETlgHLYAGQIASHISliAPDDRRTLILGLGLSKSKAE 130
                 689*************777777766655778888888777999********966544349***********88899999********955443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 1040.21
//
Query:       CCE29080.1  [L=1209]
Description: probable ECM16-putative DEAH-box RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-25   87.9   1.8      1e-24   86.9   0.0    2.6  2  HA2           Helicase associated domain (HA2)
    1.3e-11   44.8   0.0    4.2e-11   43.2   0.0    1.9  1  Helicase_C    Helicase conserved C-terminal domain
    2.4e-11   43.8   0.0    4.7e-11   42.9   0.0    1.5  1  OB_NTP_bind   Oligonucleotide/oligosaccharide-binding (OB)-fo
    8.9e-08   32.1   0.1    3.2e-07   30.3   0.1    2.0  2  DEAD          DEAD/DEAH box helicase
    4.2e-06   27.1   0.1    1.9e-05   25.0   0.0    2.1  1  AAA_22        AAA domain
    7.2e-05   23.2   0.1    0.00016   22.0   0.1    1.6  1  AAA_19        AAA domain
    0.00066   19.5   0.1     0.0016   18.2   0.1    1.6  1  AAA_30        AAA domain
  ------ inclusion threshold ------
      0.012   14.7   0.2      0.042   12.9   0.0    2.0  2  T2SSE         Type II/IV secretion system protein
      0.016   14.7   0.0      0.039   13.4   0.0    1.6  1  PhoH          PhoH-like protein
      0.033   13.5   0.0      0.074   12.4   0.0    1.5  1  ATPase        KaiC
      0.038   14.0   0.0       0.17   11.9   0.0    2.0  2  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
      0.055   14.0   0.0      0.055   14.0   0.0    3.4  3  AAA_23        AAA domain
      0.072   12.4   0.0       0.22   10.8   0.0    1.8  1  FtsK_SpoIIIE  FtsK/SpoIIIE family


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.4       8.2   1.1e+04      67      78 ..     255     278 ..     235     314 .. 0.52
   2 !   86.9   0.0   7.2e-28     1e-24       1     108 []     846     963 ..     846     963 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.2
         HA2  67 eneeekeeeee............e 78 
                  +ee++++ee+            +
  CCE29080.1 255 DQEEDDDDEETdndgsgsesgqnT 278
                 222222222224444333332220 PP

  == domain 2  score: 86.9 bits;  conditional E-value: 7.2e-28
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeee.......e.....eekakkkrk 87 
                 A++lL++l+AL+++g++T++G++m+ +Plspr+a++Ll++  + ++cl+++i++vA ls+ e+fl+e+++ ++ + +       +     e+++++ r+
  CCE29080.1 846 AEKLLTYLSALSPSGQVTQIGKTMSVFPLSPRFARILLVG--HLHDCLPYTIALVAGLSAAEVFLPETQAIPQLTVRedveirtNadvvaETRQANVRR 942
                 89**************************************..778************************999888877776665156777999999999 PP

         HA2  88 eeekarrklahkdaegDhltl 108
                  +++ +++++  d+++D+++l
  CCE29080.1 943 LFNEVHKNFCYLDDRSDAIKL 963
                 *****************9976 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0     3e-14   4.2e-11      39     111 .]     689     784 ..     672     784 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 3e-14
                 T.....TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH..................HHHHHHHTTSSSTT CS
  Helicase_C  39 k.....gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv..................tsyiqriGRtgRag 111
                 +     ++++++l++ lp++e+++++e   +g+++v++at+vae++++ip+ ++V++++  ++                   +s+ qr+GR+gR g
  CCE29080.1 689 QeagplKMQILPLYSLLPTREQLRVFEPVPEGTRQVILATNVAETSLTIPGTKFVFDCGRSKERqydrqsgvqsyeigwiskASASQRAGRAGRTG 784
                 235667899**************************************************996655577888899999*****************86 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   3.4e-14   4.7e-11       1      80 [.    1030    1143 ..    1030    1146 .. 0.79

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 3.4e-14
                   HHHHHHHHHTTCEEEEEE.........TTCC......EEETTT..........CEEEEE-TTSTTTTT...TSSSEEEEEEEEES..........S CS
  OB_NTP_bind    1 lraillaGlypqiarkdp.........skkd......yktart..........ktrvfihpsSvlaknekekepewvvytelvet..........t 61  
                   l+++++aG+++q+a++++         +k +      y ++ +          +  v+ihp+S +a+ + +++pe++vy +l++t           
   CCE29080.1 1030 LKQMVAAGFVDQVAIRADlcptrpeqyRKPKraidvpYLPL-IplhetqgpdhDSLVYIHPTSPMAHLSIQECPEYIVYSYLQRTtpsgadpekkG 1124
                   79************988877765554422224556663333.03455666777**************4456**********************999 PP

                   SEEEEEEEEE-HHHHHHHS CS
  OB_NTP_bind   62 klylrdltaidpawLllfa 80  
                   k++++ lt+++  +L  +a
   CCE29080.1 1125 KTRMHSLTDVTGGQLSGLA 1143
                   9**********99997766 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   2.3e-10   3.2e-07       6     173 ..     389     555 ..     385     557 .. 0.71
   2 ?   -3.9   0.0       7.3     1e+04      40      78 ..    1074    1112 ..    1068    1134 .. 0.69

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 2.3e-10
                 HHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   6 eaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvg 103
                 +++++i +++ v+++++TGsGKT+     ++++ y + ++ t  ++ +  P r  a  + +++   +     ++ +     + r + ++   ++ i + 
  CCE29080.1 389 RIMEAIHNNDIVVICGATGSGKTTQVPQFLYEAGYGSsTSPTPGMIAVTQPRRVAAVSMSRRVADELGDH--SEAVA---YQIRFEGTVS-GKTAIKFL 481
                 5778888999999***********98877777777765555555677889************98777742..23222...2334444444.6699**** PP

                 EHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT.....TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
        DEAD 104 tpgrlddllstgklnlsqvrflVlDEadrlldq.....gfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdv 173
                 t g l++ +  + ++l++ + +++DEa++ + +     g+   + ++ ++l++   + k   +++++SATl  +d+
  CCE29080.1 482 TDGVLLREIA-QDITLRRYSAIIIDEAHERSVNtdiliGMLSRVIKLRAELAEEDPTVK-PLKLVIMSATLRiEDL 555
                 *******884.6789**************999844444444444444444443333333.244********87765 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7.3
                  HHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   40 yetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrv 78  
                   et+g ++   +++ Pt  +a+  ++++ +++ y  l+ 
  CCE29080.1 1074 HETQGPDHDSLVYIHPTSPMAHLSIQECPEYIVYSYLQR 1112
                  466778888899999999999888888877777655544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.4e-08   1.9e-05       4     103 ..     396     510 ..     392     551 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.4e-08
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.................erlsseellealeqa 85 
                 +  i+v++G +G+GKTt + ++l+++  + + + + p+ + vt p      ++ r+++ +lg+  +a                 + l+   ll+ ++q 
  CCE29080.1 396 NNDIVVICGATGSGKTTQVPQFLYEAG-YGSSTSPTPGMIAVTQPRRVAAVSMSRRVADELGDHSEAvayqirfegtvsgktaiKFLTDGVLLREIAQD 493
                 56799********************94.5555559***************************88888****************9999999999999999 PP

      AAA_22  86 lraravielliiDEaqhl 103
                 +  r+  +++iiDEa+  
  CCE29080.1 494 ITLRRY-SAIIIDEAHER 510
                 999988.9********85 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   1.2e-07   0.00016       4     116 ..     390     512 ..     387     535 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.2e-07
      AAA_19   4 ave.alkekvllvtaGpGtGKTrvlkhivallvelggvkp..........eeillvaftgrAakelrerlaalgae...atTiHrlalldfddllteal 88 
                 ++e  ++++++++ +  G+GKT+ + + + ++    + +p          +++++v++ +r a+el +  +a+  +     T+ + + ++f ++     
  CCE29080.1 390 IMEaIHNNDIVVICGATGSGKTTQVPQFLYEAGYGSSTSPtpgmiavtqpRRVAAVSMSRRVADELGDHSEAVAYQirfEGTVSGKTAIKFLTD----G 484
                 5554689999999999************999999998888899999999999999999999999999999777766444234443322222222....2 PP

      AAA_19  89 elleeaeeekklqeeellivDEfqdvde 116
                  ll+e +++ +l++  ++i+DE+ + + 
  CCE29080.1 485 VLLREIAQDITLRRYSAIIIDEAHERSV 512
                 3566888889995555******987554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.2e-06    0.0016       9      98 ..     390     508 ..     384     527 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-06
      AAA_30   9 avealltsgdrvavltGpAGtGKttalkal..reaweaag...............grviglAptgkaAkvLaeelgieastiakllkrlk......... 81 
                 ++ea+ +++d ++v+ G+ G+GKtt + +   ++ +   g               +rv++++ + ++A++L++++++ a+ i    +  +         
  CCE29080.1 390 IMEAI-HNND-IVVICGATGSGKTTQVPQFlyEAGY---GsstsptpgmiavtqpRRVAAVSMSRRVADELGDHSEAVAYQIRFEGTVSGktaikfltd 483
                 44444.4554.9*************88776323333...345689***************************866654444432222222334444444 PP

      AAA_30  82 ........grarlepgtllivDEag 98 
                         +  +l++ + +i+DEa 
  CCE29080.1 484 gvllreiaQDITLRRYSAIIIDEAH 508
                 5699998866788888*******95 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.3       3.1   4.3e+03      41      99 ..      21      80 ..       8     119 .. 0.59
   2 ?   12.9   0.0   3.1e-05     0.042     120     147 ..     388     415 ..     349     423 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.1
       T2SSE 41 elekaalerlisriaalakldiseerplqdarlpekgvrlrvvllPvvag.ealviRkks 99
                e+ +++++   ++i  +a+ + +++r  +   l+++g+++ +  +  +++   + +Rk +
  CCE29080.1 21 ESAQHEIQDTNQEILPAAQIERQKKRDQLKRDLQQDGTKVSGKKAKRLEKyIDIKLRKDE 80
                444444455555555555555555555555555555555555554444444445555444 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.1e-05
       T2SSE 120 evlrkavrerglilvsGgTgsGKttlly 147
                 + + +a++++ ++++ G+TgsGKtt + 
  CCE29080.1 388 QRIMEAIHNNDIVVICGATGSGKTTQVP 415
                 4466788999***************865 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.8e-05     0.039       8      33 ..     386     411 ..     381     414 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHH-SEEEEE--TTSSTT CS
        PhoH   8 eQkeylealkkndivfaiGpaGtGKt 33 
                 e ++++ea+++ndiv++ G +G+GKt
  CCE29080.1 386 EEQRIMEAIHNNDIVVICGATGSGKT 411
                 567899*******************9 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.4e-05     0.074      15      43 ..     393     421 ..     386     442 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.4e-05
      ATPase  15 GipegrvvlitGepGtGKtifalqFlikg 43 
                  i ++ +v i+G +G+GKt+ + qFl++ 
  CCE29080.1 393 AIHNNDIVVICGATGSGKTTQVPQFLYEA 421
                 577899*********************85 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         2   2.7e+03       8      44 ..      82     120 ..      77     124 .. 0.71
   2 ?   11.9   0.0   0.00013      0.17       9      52 ..     389     430 ..     382     440 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2
                 HHHHHHHHHCH..TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE   8 ealgkklakal..gdvilLeGdLGaGKTtlvrglakalg 44 
                 ++l +kla+    +++++ +  LG GK t  ++l +al 
  CCE29080.1  82 KDLLAKLAERRidTSLFASSRSLGQGKETKRQALSRALR 120
                 5555666664444556777889******99999999875 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00013
                 HHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT------TT CS
        TsaE   9 algkklakalgdvilLeGdLGaGKTtlvrglakalgveevkSPT 52 
                 ++ +++ +  +d++++ G  G+GKTt v +++ + g+ + +SPT
  CCE29080.1 389 RIMEAIHN--NDIVVICGATGSGKTTQVPQFLYEAGYGSSTSPT 430
                 44444444..899************************9*****9 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   8.6       4.8   6.7e+03     120     176 ..      34     106 ..       5     166 .. 0.49
   2 ?   -3.6   2.0       9.9   1.4e+04      90      95 ..     252     257 ..     190     318 .. 0.50
   3 ?   14.0   0.0     4e-05     0.055      18     128 ..     396     528 ..     386     602 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.8
      AAA_23 120 fise.llgskkiilnlilflgqerfeefel..kdkkerleelekeleeledekkllekl.................e 176
                 +++  +++++k++ +l   l+q+ +    +   +k +rle++++ +  + + k+ll kl                 +
  CCE29080.1  34 ILPAaQIERQKKRDQLKRDLQQDGT----KvsGKKAKRLEKYIDIKLRKDENKDLLAKLaerridtslfassrslgQ 106
                 2222122222222222222222222....012333446666666665666666666655444444444444333221 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 9.9
      AAA_23  90 ierere 95 
                 +e+++e
  CCE29080.1 252 FEEDQE 257
                 111111 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 4e-05
      AAA_23  18 skgltlItGpNGaGKTTil.dAiklaLygetprlsrks.......................grgfeksdveiesegkvkayveltfenkdgrytrsier 92 
                 ++ +++I+G +G+GKTT + +++  a yg ++   +                         g ++e   + i +eg+v++   ++f +++    r+i +
  CCE29080.1 396 NNDIVVICGATGSGKTTQVpQFLYEAGYGSSTSPTP-GmiavtqprrvaavsmsrrvadelGDHSEAVAYQIRFEGTVSGKTAIKFLTDGVL-LREIAQ 492
                 57899************8844444466775432222.2467777776655555555554444444444444555555555555555444333.577777 PP

      AAA_23  93 erelskkkgkttkkaklelleideleqfisellgsk 128
                 +++l++ ++  +++a ++++++d l  ++s+ ++ +
  CCE29080.1 493 DITLRRYSAIIIDEAHERSVNTDILIGMLSRVIKLR 528
                 888888888778888888887777777777766655 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00016      0.22      40      60 ..     398     418 ..     366     425 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
                   .SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  40 shllvaGatgsGKStalntLi 60 
                     ++++GatgsGK+t +  ++
    CCE29080.1 398 DIVVICGATGSGKTTQVPQFL 418
                   3589***********987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1242  (0.0692732); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.16u 0.33s 00:00:01.49 Elapsed: 00:00:00.50
# Mc/sec: 7223.79
//
Query:       CCE29081.1  [L=545]
Description: related to 24-dehydrocholesterol reductase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-16   60.6   0.0    2.2e-16   59.8   0.0    1.3  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   1.2e-20   2.2e-16      13     138 ..      20     144 ..      12     145 .. 0.90

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 1.2e-20
                    HHHHHHHHHHCTSCEEEESSSTTEESTTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGSBHHHTTTTT- CS
  FAD_binding_4  13 vaaalrlaneaglpvlvrGgGssllgqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgipgtvGGaiatna 108
                    +++ ++   e++ p++++ g ++ ++ + ++ + ++d+s+l ++l++d++++ta ve+ v++++lv+a+ +++l+ ++ ++ +   tvGG  ++ +
     CCE29081.1  20 ISRQVKSFYERQKPFRIYHGSTNSTRTSHRRADNTIDTSHLSHVLSVDPNKRTALVEPNVPMDQLVKATLKHNLIPPVVME-FPGITVGGGFSGTS 114
                    66778888999**************77778999************************************777777776555.5567********** PP

                    EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4 109 gGygsekyGlirdnvlglevvladGevvrl 138
                    g + s +yG++  + +  e+vl+dG++ r+
     CCE29081.1 115 GESSSFRYGAFDATMETIEIVLPDGTITRA 144
                    ***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3775.56
//
Query:       CCE29082.1  [L=588]
Description: probable ATP-dependent Helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-47  160.1   0.1    7.4e-47  159.4   0.1    1.4  1  DEAD            DEAD/DEAH box helicase
    5.6e-25   87.8   0.1    7.4e-24   84.2   0.0    2.6  3  Helicase_C      Helicase conserved C-terminal domain
    9.3e-20   70.6   0.6    1.9e-19   69.6   0.6    1.6  1  DUF4217         Domain of unknown function (DUF4217)
    9.3e-05   21.8   0.0    9.3e-05   21.8   0.0    1.8  2  ERCC3_RAD25_C   ERCC3/RAD25/XPB C-terminal helicase
    0.00033   20.7   0.0     0.0009   19.3   0.0    1.8  1  ResIII          Type III restriction enzyme, res subunit
    0.00067   18.0  16.0    0.00088   17.6  16.0    1.1  1  Nop14           Nop14-like family
  ------ inclusion threshold ------
      0.058   11.5  27.4        0.1   10.7  27.4    1.3  1  DNA_pol_phi     DNA polymerase phi
       0.27    9.5  17.1        0.4    8.9  17.1    1.2  1  CDC45           CDC45-like protein
       0.47   10.2  14.1       0.82    9.5  14.1    1.3  1  SpoIIIAH        SpoIIIAH-like protein
       0.59    9.5  22.2       0.95    8.8  22.2    1.3  1  SDA1            SDA1
        2.2    7.5  25.7        3.3    6.9  25.7    1.2  1  BUD22           BUD22
        3.5    6.4  16.2        5.9    5.7  16.2    1.2  1  DUF2722         Protein of unknown function (DUF2722)


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.1   4.9e-50   7.4e-47       1     176 []     136     307 ..     136     307 .. 0.95

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 4.9e-50
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng 97 
                 t+iQ+ aip +l g+dvl+aa+TGsGKTlaflip+++i++    k ++g+ +++v+PtreLa q++  +++++k+ + ++  +igg +++ +++kl++g
  CCE29082.1 136 TAIQKVAIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEILSALrfKPRNGTGVIVVSPTRELALQIFGVARELMKHHSQTYGIVIGGANRKAEVEKLSKG 234
                 79*************************************88799999***************************988777799**************** PP

                 CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 v+++++tpgrl+d+l +  + +++++ lV+DEadr+l+ gf+d+i++i++ l       + +rq++++SAT +++v++l
  CCE29082.1 235 VNLLIATPGRLLDHLLNTPFVFKNLKSLVIDEADRILEVGFEDEIRQIVKVL------SNDDRQTMLFSATQTTKVEDL 307
                 *************9999999********************************......346688*********999875 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.2   1.8e+03      12      73 ..     180     241 ..     170     242 .. 0.51
   2 ?   -1.1   0.0       1.6   2.4e+03       3      31 ..     279     306 ..     277     334 .. 0.72
   3 !   84.2   0.0   4.9e-27   7.4e-24      10     110 ..     353     454 ..     344     455 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.2
                 HTTTTSEEEEEESSHH.HHHH...HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  12 leeeggkilifvntid.rlek...vklllekkgikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 + ++g  ++++++t++  l+    ++ l ++++ ++ ++   +   +r++ +e+   + +++Liat
  CCE29082.1 180 KPRNGTGVIVVSPTRElALQIfgvARELMKHHSQTYGIV---IGGANRKAEVEKLS-KGVNLLIAT 241
                 455667778888888854422333222222223333333...44567777777773.345777776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
                 HHHHHHHHHHTTTTSEEEEEESSHH.HHHH CS
  Helicase_C   3 leallellkleeeggkilifvntid.rlek 31 
                 ++++++ l  +++++++++f+ t++ ++e+
  CCE29082.1 279 IRQIVKVL--SNDDRQTMLFSATQTtKVED 306
                 55666666..78999999999998866653 PP

  == domain 3  score: 84.2 bits;  conditional E-value: 4.9e-27
                 H.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTT CS
  Helicase_C  10 l.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGR 106
                 l  ++++++k+++f  ++ +++  ++ll +  +  v+ lhg+ +q++r  ++ +f + ++ +Li+tdva+rG+dip v+++++fd+p+n+++yi+r+GR
  CCE29082.1 353 LrRMQAKKKKVIVFFSSCASVKYyAELL-NYIDCPVLDLHGKQKQQKRTNTFFEFSNAKHGILICTDVAARGLDIPAVDFIVQFDPPDNTRDYIHRVGR 450
                 4567899**************7644444.5559**********************999999************************************** PP

                 SSST CS
  Helicase_C 107 tgRa 110
                 t+R+
  CCE29082.1 451 TARG 454
                 ***6 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.6   1.3e-22   1.9e-19       1      61 []     496     556 ..     496     556 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 1.3e-22
     DUF4217   1 iqqkleslcakdrdlkelAqkAfvsyvraYsvhlakeiFrvkkLdlealAksfGLleaPki 61 
                 +q++le+l+ k+++l+++A++Af+sy++aY++h+++++++v+kLdl+++AksfG+  +P++
  CCE29082.1 496 VQSQLEKLIGKNYYLQQSAKEAFKSYLHAYASHSLRSVYDVHKLDLARVAKSFGFTTPPRV 556
                 699********************************************************97 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   2.7       8.5   1.3e+04     239     239 ..      57      57 ..      20      83 .. 0.49
   2 !   21.8   0.0   6.2e-08   9.3e-05      51     151 ..     352     454 ..     326     464 .. 0.78

  Alignments for each domain:
  == domain 1  score: -4.9 bits;  conditional E-value: 8.5
  ERCC3_RAD25_C 239 l 239
                    +
     CCE29082.1  57 E 57 
                    1 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 6.2e-08
  ERCC3_RAD25_C  51 fLikyhekrgDkiivfsDnvfaLkeyakklkkp...y..iyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqe 141
                    f ++  ++++ k+ivf  +  ++k ya+ l++       ++G+ ++++r++ + +f + ++   ++   v+   +D+P    ++q +    + r  
     CCE29082.1 352 F-LRRMQAKKKKVIVFFSSCASVKYYAELLNYIdcpVldLHGKQKQQKRTNTFFEFSNAKH-GILICTDVAARGLDIPAVDFIVQFDPPDNT-RDY 444
                    4.444567789******************997422223379************99987755.5666789****************9987665.577 PP

  ERCC3_RAD25_C 142 aqrlGriLra 151
                      r+Gr  r 
     CCE29082.1 445 IHRVGRTARG 454
                    8899998775 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     6e-07    0.0009      28     168 ..     153     299 ..     116     302 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6e-07
                 EEEESTTSTHHHHH.HHHHHHH-S..........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH. CS
      ResIII  28 likmaTGtGKTlva.aklierllkkgkee.....kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadse 119
                 l ++ TG+GKTl   + +ie l+   + +      ++++ p+++l  q     +++++ + +  g ++ g ++ka  ek s+  ++l++t  +l  ++ 
  CCE29082.1 153 LGAAKTGSGKTLAFlIPAIEILSA-LRFKprngtGVIVVSPTRELALQIFGVARELMKHHSQTYGIVIGGANRKAeVEKLSKGVNLLIATPGRLLDHL- 249
                 55688*******994555554444.444457799****************77777777776667888888888876788899****************. PP

                 .......HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---..SEEEEEESS CS
      ResIII 120 eeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke..avllglTAT 168
                      ++ +  ++ + ++iDEa r+ +    +++r+i++ +++     + ++AT
  CCE29082.1 250 ----LNTPFVFKNLKSLVIDEADRILEVgfeDEIRQIVKVLSNddRQTMLFSAT 299
                 ....9999****************999766568888866665444666667888 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6  16.0   5.9e-07   0.00088     345     409 ..      36      92 ..       3     167 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.9e-07
       Nop14 345 eeeeeededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeeede 409
                 + + ++d+dd++eddd+ve e+eeee  +e++ee+++++eee+++e+ edd++d+ ++      +
  CCE29082.1  36 KVQAKDDSDDEDEDDDDVEGEEEEEE--DEDSEEDADKDEEESDAESAEDDENDDAAD------D 92 
                 12245555555556655665555433..222222222222222333333333222222......1 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  27.4   6.9e-05       0.1     639     688 ..      42     112 ..      23     137 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.9e-05
  DNA_pol_phi 639 edededeeddeeeeeeddeededseedddeeesdedee..deddedvdeid....................e 688
                  + +dede+dd+ e ee++eededseed+d++e+++d e  ++d+ d++  d                    e
   CCE29082.1  42 DSDDEDEDDDDVEGEEEEEEDEDSEEDADKDEEESDAEsaEDDENDDAA-DdtigklptdeapvlslnsdsE 112
                  2333444444444444444444444333333333333311222222222.2356755555555555544440 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  17.1   0.00027       0.4     118     182 ..      29      89 ..      13     135 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00027
       CDC45 118 eereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesd 182
                 + ++ + +++ ++    ++++e+e+ddd e+eeeeee+++++e++d++e++++ +s +d+e++++
  CCE29082.1  29 KAKKPVPKVQAKD----DSDDEDEDDDDVEGEEEEEEDEDSEEDADKDEEESDAESAEDDENDDA 89 
                 2222222222222....332344444444444444444444444444443333332222222222 PP

>> SpoIIIAH  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  14.1   0.00055      0.82      29     114 ..      37     125 ..      10     128 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00055
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............XXXXXXXXXXX--HHHHHHHHHHHHH CS
    SpoIIIAH  29 aaetaeteqeesekaeigddkekdessaasaeaesssetesesseksdiassdedeade..........ltsetasaaasasdyfaeakleReqkr 114
                  +++ +++ e++++ +++        +++++e+e+s+e++++++e+sd++s ++de+d+          + ++   + +s+s++f+++kl+ +++ 
  CCE29082.1  37 VQAKDDSDDEDEDDDDVEG-------EEEEEEDEDSEEDADKDEEESDAESAEDDENDDaaddtigklpTDEAPVLSLNSDSELFEQLKLSEKTMK 125
                 2222233333333333333.......2222222222222333333333333333222224566689999777777778889*********998876 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  22.2   0.00064      0.95      93     142 ..      41      88 ..       7     140 .. 0.44

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00064
        SDA1  93 edsddeddeedwevesddds..eedseggwidvesdeeeieesdesedeeee 142
                 +d +d++de+d++ve ++++  +edse+   d ++deee + ++ ++de+++
  CCE29082.1  41 DD-SDDEDEDDDDVEGEEEEeeDEDSEE---DADKDEEESDAESAEDDENDD 88 
                 11.1111111111111111100111111...111111111111111111111 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  25.7    0.0022       3.3     139     216 ..      18      97 ..       3     129 .. 0.34

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0022
       BUD22 139 k.....kkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsedeekeeseddeeeeeededdedaeedeedeeaeerel 216
                 +     +kk+k+++k   k ++k+++++e+e+ ++++ eee+e++ed  +ee++d++eee++ e+ ed+e ++++++++  +l
  CCE29082.1  18 VdatalSKKAKKAKKPVPKVQAKDDSDDEDEDDDDVEGEEEEEEDED--SEEDADKDEEESDAESAEDDE-NDDAADDTIGKL 97 
                 33332322222222222222222222222222122222222222222..111111111111111111111.122223333333 PP

>> DUF2722  Protein of unknown function (DUF2722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  16.2    0.0039       5.9     357     446 ..       7      91 ..       3     106 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0039
     DUF2722 357 kRrkssssfesidlnsaseilkpaikfensaiasqekeddddddddekerkkeeekdk.ekdsikadddkdlsmdssineegetevddanp 446
                 k+rk + +   +d +  s+  k   k +++ +  q k+d+dd+d+d+++ + eee+++ e+++  ad+d++ s+ +s   +     dda+ 
  CCE29082.1   7 KKRKRTVAEPPVDATALSKKAK---KAKKPVPKVQAKDDSDDEDEDDDDVEGEEEEEEdEDSEEDADKDEEESDAESAEDDE---NDDAAD 91 
                 5566666778999999996444...444444444444444433333333333222222022222333333333333332233...333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1370  (0.0764125); expected 358.6 (0.02)
Passed bias filter:                      801  (0.0446762); expected 358.6 (0.02)
Passed Vit filter:                       208  (0.0116013); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.46
# Mc/sec: 3802.72
//
Query:       CCE29083.1  [L=351]
Description: related to FMN-dependent 2-nitropropane dioxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-44  151.6   1.1      5e-44  151.0   1.1    1.3  1  NMO       Nitronate monooxygenase
    1.7e-09   37.2   3.5    2.4e-09   36.7   1.9    1.9  2  IMPDH     IMP dehydrogenase / GMP reductase domain
    2.7e-05   23.4   2.3    2.7e-05   23.4   2.3    1.5  2  FMN_dh    FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.0   1.1   8.4e-48     5e-44       2     331 .]       9     333 ..       8     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 151.0 bits;  conditional E-value: 8.4e-48
         NMO   2 slltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyltaDrlakeirkvkaltdk...Pfgvnlflpkkdaadraekykkeleeaalelnie 97 
                 ++lt ll+i++p++ +gm   ++ +LaaavsnaGgLGv+++   t+ +l++ i+++ka  ++   Pfgv l lp+   + r+            +    
  CCE29083.1   9 TPLTTLLNIQHPIMLAGMAHTAGGELAAAVSNAGGLGVIGGFQYTPEQLRDIIQEMKAKFKHpdlPFGVDLALPQVGGNARK-----------TNHDYT 96 
                 67999***********************************999***99998888887765443349********99888882...........122222 PP

         NMO  98 egvrfyrkvevvldekvevvsfgfglpteevvarlkeagvvliptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd... 193
                  g    + v+++ + ++ +   ++g+p +ev+++ ++ +++++ +++  k+a k+  rG D++  qG+e+GGh+G  +v+      L+p+ +d+     
  CCE29083.1  97 HGRL-HELVDLIIESGACLFVSAVGVPDKEVIDKFHKHNILVMNMVGHPKHAVKALDRGVDMICGQGSEGGGHTG--DVA---NSVLMPSLVDVARryk 189
                 3332.445778888888899999****************************************************..443...4577777777777777 PP

         NMO 194 ........iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdakdahkkklleaklddteltsavsGrpaRalatelleeleeakiatlalpea 284
                           v+AaGGi ++rg+a  L  GA +v +gtrf++  e+   + hk++++  ++ dt  t    Grp Ra  +  l+  +    a+ +l+  
  CCE29083.1 190 psmlkgqtALVVAAGGIHNGRGLASSLMQGAVAVWVGTRFVASTEAASAEEHKHAVVSCGFSDTDRTVVLTGRPLRAKLNSYLRGWQARGDAAQQLCDR 288
                 7888888799****************************************************************************9555555556654 PP

         NMO 285 helakkiraalveagnteegllwagqgidrldkiisvkeLiesLvee 331
                      +i +   ++ +  e   + gq+++ ++ki +++e++ ++v+e
  CCE29083.1 289 --GVIPIEHDFENSPDDVEFPHIMGQVAGAITKIQPAREIVDEMVAE 333
                 ..4679********8999999999*******************9975 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   1.9   3.9e-13   2.4e-09      23     248 ..       7     238 ..       3     246 .. 0.75
   2 ?   -2.2   0.0      0.27   1.6e+03      99     318 ..     317     346 ..     305     349 .. 0.55

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 3.9e-13
                 --EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHH.HHHHHHTSTTSXB......XTTSXB-EEEEE-SSTTHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  23 lktkltkkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqae.evkkvkrspnaak......dekgrllvgaavgvkedalervkalve 114
                 ++t lt+ ++++ P++ a m   ++ e+A a++++Gg+gvi   + + eq +  ++++k +  +        d     + g a  +   +++  +  ++
  CCE29083.1   7 ITTPLTTLLNIQHPIMLAGMAHTAGGELAAAVSNAGGLGVIGGFQYTPEQLRdIIQEMKAK-FKHPdlpfgvDLALPQVGGNARKT---NHDYTHGRLH 101
                 68999*************************************9876666665056777744.233301111122222223333333...3344444455 PP

                 TT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEE.E-SHHHHHHHHHTT-SEEEE-SS-.STTBHHHHHCSB---HHHHHHHHHH..HHCTCT-E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
       IMPDH 115 agvdvlvvdsahghsekvleavkeikkkveeveviaGn.vataegakaLieagadavkvGiGp.GsiCttrvvagvGvpqltAvaevae..aakkagvp 209
                 + vd+++   a    + v    ke+ +k+++ ++++ n v   + a + ++ g+d++ +G G+ G   t  v  +v +p l  va+ ++  + k +   
  CCE29083.1 102 ELVDLIIESGACLFVSAVGVPDKEVIDKFHKHNILVMNmVGHPKHAVKALDRGVDMI-CGQGSeGGGHTGDVANSVLMPSLVDVARRYKpsMLKGQTAL 199
                 66888887778878888887788888888877776666155678888999******9.79997477778888889**********99986577778899 PP

                 EEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 210 viaDGGikysgdivkAlaaGadavmlGsllagteEspge 248
                 v+a GGi++ + ++ +l  Ga av +G  + + +E+ + 
  CCE29083.1 200 VVAAGGIHNGRGLASSLMQGAVAVWVGTRFVASTEAASA 238
                 ****************************99999998765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.27
                 E-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  99 vgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsiCttrvvagvGvpqltAva 197
                 +                                                                                                  
  CCE29083.1 317 I-------------------------------------------------------------------------------------------------- 317
                 3.................................................................................................. PP

                 HHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEETTEEEEEEEETTSHHHHHH-SS-TTS-..--SS-SBEEEEEE-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 198 evaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgeviliegrkyKeyrGmgslgamkkgskdryfqkkeklvpeGvegrvpyk 296
                                                                                                                 p++
  CCE29083.1 318 --------------------------------------------------------------------------------------------TKIQPAR 324
                 ............................................................................................3334445 PP

                 B-HHHHHHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 297 gsvkevveqlvgglrsgmgylG 318
                   v+e+v + v +l+ +  ylG
  CCE29083.1 325 EIVDEMVAEAVDQLKLASVYLG 346
                 5555555555555555555555 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.41   2.4e+03      58      71 ..      18      31 ..      16      66 .. 0.58
   2 !   23.4   2.3   4.4e-09   2.7e-05     224     335 ..     141     262 ..     125     272 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.41
                SSSEEE--BSTGGG CS
      FMN_dh 58 slPvliaPvglakl 71
                ++P+++a ++ +  
  CCE29083.1 18 QHPIMLAGMAHTAG 31
                55666665554332 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 4.4e-09
                 E-SHHHHHHHHHTTESEEE..E--GGGTSSTT---HHH.CHHHHHHHH........SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHH CS
      FMN_dh 224 vltaedakraveaGvdgiv..vSNHGGRqldgapatid.vLpeiveavgg......rievlvDgGirrGsDvlkAlalGAdavllGRpflyglaagGee 313
                 v +++ a +a++ Gvd i    S  GG+  d a + +   L +++++ +        + v++ gGi +G   +  l  GA av++G  f+    a+ +e
  CCE29083.1 141 VGHPKHAVKALDRGVDMICgqGSEGGGHTGDVANSVLMpSLVDVARRYKPsmlkgqTALVVAAGGIHNGRGLASSLMQGAVAVWVGTRFVASTEAASAE 239
                 7799**************7336************9976378999888853333343799999************************9999998888777 PP

                 HHHHH.HHHHHHHHHHHHHHHT- CS
      FMN_dh 314 Gverv.leilraelertmallGv 335
                   +++ +++  ++++rt  l+G 
  CCE29083.1 240 EHKHAvVSCGFSDTDRTVVLTGR 262
                 77765156667888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2487.29
//
Query:       CCE29084.1  [L=481]
Description: uncharacterized protein CPUR_02775 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3635.32
//
Query:       CCE29085.1  [L=162]
Description: uncharacterized protein CPUR_02776 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0006   20.7   0.5    0.00085   20.3   0.5    1.3  1  Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.5   4.8e-08   0.00085       9      89 ..      27     110 ..      19     113 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.8e-08
  Myb_DNA-bind_3   9 ilvdllveqvkkgnr.iekktfk....keawkeileefnaktgakytkkqlknrlkklrkeyklvkellersgfsWDpttktvtAd 89 
                      ++  l ++ + g    + + f     k+a + ++e+f ++   +y  + l++++ ++r+++++ ke++e sg +W++ +k ++ +
      CCE29085.1  27 AFIGFLNDERNDGALrNTTTKFVaptlKRASDFMTEKFPQRS-WRY-DTTLRSQFRRIRDNWRIFKEIIEVSGTEWNEAAKSFNLS 110
                     566666666666654233444541111334445566666655.555.578******************************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1195.40
//
Query:       CCE29086.1  [L=373]
Description: uncharacterized protein CPUR_02777 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00059   19.3  20.9       0.05   13.2   6.7    2.4  2  PT              PT repeat


Domain annotation for each model (and alignments):
>> PT  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   6.7   2.8e-06      0.05       1      34 [.     145     178 ..     142     180 .. 0.70
   2 !   10.2   9.4   2.4e-05      0.43       2      34 ..     178     210 ..     174     212 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-06
          PT   1 qptaqPtaqPTvqPTgqPtaqPTdqPtaqPtdaP 34 
                 +p+a P+ +P + P+  P++ P d P + P d P
  CCE29086.1 145 EPAADPADDPADDPADDPADDPADDPADDPADDP 178
                 5777777777777777777777777777777766 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 2.4e-05
          PT   2 ptaqPtaqPTvqPTgqPtaqPTdqPtaqPtdaP 34 
                 p++ P+ +P + P++ P++ P d P + P + P
  CCE29086.1 178 PADDPADDPADDPAADPADDPADDPADDPAADP 210
                 667777777777777777777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2625.59
//
Query:       CCE29087.1  [L=75]
Description: probable ribosomal protein L38 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-34  116.4   3.0    4.7e-34  116.3   3.0    1.0  1  Ribosomal_L38e  Ribosomal L38e protein family


Domain annotation for each model (and alignments):
>> Ribosomal_L38e  Ribosomal L38e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   3.0   2.6e-38   4.7e-34       1      68 [.       2      70 ..       2      71 .. 0.97

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 2.6e-38
  Ribosomal_L38e  1 PkeikdiKeFLeiarrkDaksvkikknk.kdntKfKvRcsryLYTLvvkdkekaeklkqsLppglkvke 68
                    P+e+ diK+F+ei+rrkDa+s++ikknk ++n+KfKvRc+r+LYTLv++d+ekaeklkqsLpp+l+++ 
      CCE29087.1  2 PREVADIKKFIEICRRKDASSARIKKNKqSNNIKFKVRCQRHLYTLVLQDSEKAEKLKQSLPPTLNISV 70
                    9***************************999**********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1100  (0.0613531); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 567.25
//
Query:       CCE29088.1  [L=379]
Description: related to arsenite transporter ARR3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-50  170.2   9.0      4e-50  170.2   9.0    1.7  2  SBF          Sodium Bile acid symporter family
    1.5e-07   31.1  15.4      2e-07   30.6  15.4    1.1  1  SBF_like     SBF-like CPA transporter family (DUF4137)
  ------ inclusion threshold ------
        9.4    4.4  23.2       0.55    8.5   6.3    2.0  2  DUF2070      Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> SBF  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.2   9.0   6.6e-54     4e-50       1     194 [.      77     280 ..      77     281 .. 0.95
   2 ?   -3.6   0.1       1.2   7.2e+03     130     147 ..     348     365 ..     344     371 .. 0.73

  Alignments for each domain:
  == domain 1  score: 170.2 bits;  conditional E-value: 6.6e-54
         SBF   1 ailLilmmfpmglkveveklkellkr...pkalllglvlqwvikPllmfilakillrdlklepelavGlilvglapggamsnvwtylakGdlelsvvlv 96 
                 ai+L++mm+p++++v++e l+ +l +    k+++++lvl+w+i P+ m +la+++l d    ++l+ Glilvgl +++am+++w++la+Gd e+++vlv
  CCE29088.1  77 AIGLLVMMYPILCNVRYETLHVILGKaalWKQVAFSLVLNWLIAPFFMLALAWAFLPDE---SNLRSGLILVGLGRCIAMVLIWNNLAGGDPEYCAVLV 172
                 699*********************999999***********************999998...************************************* PP

         SBF  97 alstllailltPlllyllaksl.........eqttlkvpieei.vksvlivviiPliaGillryillkhkGrewfeskllpavspisligllltivvif 185
                 a++++l+++l++ l+ l+++ +         ++ +++ p  ++ + sv ++++iPl a il+r++l++ +G+ wfe ++++++sp+sligll+ti+v+f
  CCE29088.1 173 AINSMLQMVLFAPLAVLFISVIggsdgsdgsDDSKIHYPSYSLvATSVGVFLGIPLGAAILTRLVLRRLAGETWFEGVFMKFLSPLSLIGLLYTIIVLF 271
                 ***********999999999999*****998788888876665499***************************************************** PP

         SBF 186 alkgelive 194
                 a +g+ + +
  CCE29088.1 272 AAQGKHVSH 280
                 ****99876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.2
         SBF 130 ivksvlivviiPliaGil 147
                 ++ +v  ++ +P+++G++
  CCE29088.1 348 LAATVGPLIEVPVLVGLV 365
                 566777778888888876 PP

>> SBF_like  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6  15.4   3.4e-11     2e-07       2     288 ..      42     350 ..      41     358 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 3.4e-11
    SBF_like   2 wfllllilvillAslvPvfak...aggtikaeyvikyg..ValiFllsGlslstee.llanlrnwrlhllvllisflltplivlalvsllkaaldpell 94 
                 w +l++++ ill+ ++P +++   +g ++ ++  i++g  V++  +l  ++ +t + +l ++  w+  ++ l+++ l++p  +lal+ ++   ++ +l 
  CCE29088.1  42 WIFLAMLTGILLGNFAPRTGEvldQGRWVGVSIPIAIGllVMMYPILCNVRYETLHvILGKAALWKQVAFSLVLNWLIAPFFMLALAWAFLP-DESNLR 139
                 899***************9863325566665544444332555555566666665415567888**************************87.8888** PP

    SBF_like  95 iGllllaalPtTvssnvvmtsqAgGnealalceavignllGvfltPalvqlll............sgssvsvd.......yaevlkklllsvllPlvvG 174
                  Gl+l+  l   +++  +  + AgG+   + + ++i ++l ++l ++l  l++            +      d       y  v  ++++ + +Pl + 
  CCE29088.1 140 SGLILVG-LGRCIAMVLIWNNLAGGDPEYCAVLVAINSMLQMVLFAPLAVLFIsviggsdgsdgsD------DskihypsYSLVATSVGVFLGIPLGAA 231
                 ****987.5688********************************9999999997777665443221......123334447778888888888888888 PP

    SBF_like 175 qvlqkifpklvkr..lkk.llkkvdslvlllivytsfstafaqgaftsvshiillvifnvallLllvvlvillllarllklskedeiavlfcgsaKsla 270
                  + + ++++l+ +  ++  ++k ++ l+l+ + yt +  + aqg   s ++++++ + +  ++ +lv+++++l++ar l++  + + +  f ++     
  CCE29088.1 232 ILTRLVLRRLAGEtwFEGvFMKFLSPLSLIGLLYTIIVLFAAQGKHVSHQVVSVVRVAAPLVVYFLVIFFATLWAARRLGYGYRLSCTQSFTAASNNFE 330
                 888877776554322765258999****************9999998988888888888877777888889999************************* PP

    SBF_like 271 lgvplisvlfgsnp..qlgl 288
                 l++ ++  +fg+++  +l+ 
  CCE29088.1 331 LAIAVAIATFGADSeeALAA 350
                 **********9888334444 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.3   9.2e-05      0.55       8     149 ..      28     194 ..      26     223 .. 0.74
   2 ?    0.1  11.1     0.032   1.9e+02      42     149 ..     222     342 ..     208     375 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 9.2e-05
     DUF2070   8 ifrlPswk.vsllliillalligllaflssk..................lfgillfglpalvaflltlpvlrilggrltykrslflalltelivviisl 87 
                 if++ +w  + l+l+i+la+l+g+l  ++ +                  ++g+l+++ p+l ++     +  ilg+   +k+ +f  +l+ li+ +++l
  CCE29088.1  28 IFKSLRWLdRFLALWIFLAMLTGILLGNFAPrtgevldqgrwvgvsipiAIGLLVMMYPILCNVRYE-TLHVILGKAALWKQVAFSLVLNWLIAPFFML 125
                 67777888899***************99999**********99998888888888888866665544.4444777777788887776666666666555 PP

     DUF2070  88 laillsall...qalvllalvlslalvfalrllvlvavsdesllkav...lpaliqpllailllvly...f 149
                 + + ++  l   ++l +  ++++l   +a++l+   + +++ +  av   + +++q +l+++l+vl+   +
  CCE29088.1 126 ALAWAF--LpdeSNLRSGLILVGLGRCIAMVLIWNNLAGGDPEYCAVlvaINSMLQMVLFAPLAVLFisvI 194
                 444444..35799999999***********99999999999888888444556667777777777765540 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.032
     DUF2070  42 llfglpalvaflltlpvlrilggr.....ltykrslflalltelivviisllaillsallqalvllalvlslalvfalrllvlvavsdesllkavlpal 135
                 +++g+p l a++lt  vlr l g      + +k    l+l+ +l+ +i++++a    ++  ++v+   v +  +v +l+++  ++ + ++l+  + ++ 
  CCE29088.1 222 VFLGIP-LGAAILTRLVLRRLAGEtwfegVFMKFLSPLSLIGLLYTIIVLFAAQG-KHVSHQVVSVVRVAAPLVVYFLVIFFATLWAARRLGYGYRLSC 318
                 677888.788889999999998887777777777777777777777775444444.5566777887888888888888888888899999999999999 PP

     DUF2070 136 iqpllailllvly..........f 149
                 +q+++a+   + +           
  CCE29088.1 319 TQSFTAASNNFELaiavaiatfgA 342
                 999999887777655555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2702.34
//
Query:       CCE29089.1  [L=650]
Description: related to transcription initiation factor IID beta chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-30  104.4   0.0      5e-30  103.4   0.0    1.6  1  TAFII28    hTAFII28-like protein conserved region
     0.0004   20.4   2.6     0.0012   18.9   2.6    1.8  1  bZIP_1     bZIP transcription factor
  ------ inclusion threshold ------
      0.024   14.4   0.5      0.024   14.4   0.5    1.9  2  ASFV_J13L  African swine fever virus J13L protein
      0.085   13.0   5.5       0.23   11.5   5.0    2.0  1  bZIP_2     Basic region leucine zipper
          9    6.3  15.8        2.7    8.0   6.6    2.4  2  PGA2       Protein trafficking PGA2


Domain annotation for each model (and alignments):
>> TAFII28  hTAFII28-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   1.4e-33     5e-30       1      86 []     170     288 ..     170     288 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 1.4e-33
     TAFII28   1 lLlenfdeeqlnRYevfrrsklnkaavkklvnsvlsqsvsqnvaivvaglaKvFvgeiveeArevqeew...ees........................ 72 
                 +L+e+fd+eq+nRYe +r +kl++a+vk++vn+++sqsv+q+v+++v+++aK+F+ge++++Ar+vq ew   +e+                        
  CCE29089.1 170 MLVEAFDSEQYNRYELWRAAKLSDAVVKRVVNATVSQSVPQMVSTAVKAVAKLFAGELIQAARNVQGEWiaaGEKqtdlpspppsangvgaddgaeeae 268
                 69*******************************************************************7763337899******************** PP

     TAFII28  73 ......gplqpehlreayrr 86 
                       gp++p+hlrea+rr
  CCE29089.1 269 epearrGPMRPDHLREAWRR 288
                 *****77***********97 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   2.6   3.4e-07    0.0012      14      41 ..     306     333 ..     302     340 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.4e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  14 ReaArrsRqRKqaeieeLerrvkaLeke 41 
                 R  +rrsR R+++++e+Ler+v++ ek+
  CCE29089.1 306 RDNQRRSRARRKEYVENLERKVQEYEKQ 333
                 6679*******************98876 PP

>> ASFV_J13L  African swine fever virus J13L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   1.2       2.8     1e+04      97     123 ..      85     111 ..      63     131 .. 0.48
   2 ?   14.4   0.5   6.7e-06     0.024      59     168 ..     360     481 ..     345     497 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.8
   ASFV_J13L  97 asagkpvtdrpvtnrlvadkpvtnkpv 123
                 + a   v + p  +r    k +     
  CCE29089.1  85 SVASAAVSGAPKKKRGRKLKNAKAEDA 111
                 223333444444444444444444444 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 6.7e-06
   ASFV_J13L  59 aaaaieeediq.finpyqdqqwae....vtpqp...gi.akpagastasagkpvtdrpvtnr...lvadkpvtnkpvtdrlvmaaggpeaasatasaaa 145
                 a a   e di+ f++  qd++ ae    v+ qp   g+  + +g++ +s g p  +   t+r   + a+   + +p      ma    +aas+ta +++
  CCE29089.1 360 ARAGATEADIEaFLQSCQDREAAEalssVSLQPmhhGLqEQNSGTTKTSHGSPSEGVSRTQRgdtVSAQESESYQPQCGLDRMAIAALSAASSTA-SST 457
                 455566777744899999987654222277788444442467899999*****9988888764435678888999*99999999999********.567 PP

   ASFV_J13L 146 sdpaypael.yttvttqntasqtm 168
                 +d  + ae+ y t  tq   s+  
  CCE29089.1 458 CDLRFKAEPsYITSRTQSNPSKFA 481
                 788999996699****99887655 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   5.0   6.6e-05      0.23      17      40 ..     310     333 ..     309     347 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.6e-05
                 XX-HHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  17 rrsRekkkakeeeleervkeLeee 40 
                 rrsR ++k++ e+le++v+e e++
  CCE29089.1 310 RRSRARRKEYVENLERKVQEYEKQ 333
                 8*********************97 PP

>> PGA2  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   6.6   0.00075       2.7      43     121 ..     101     179 ..      91     193 .. 0.61
   2 ?    3.1   1.7     0.025        89      51     122 ..     264     329 ..     257     339 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00075
        PGA2  43 kqrekeeekeeaeekaa..kkakvspnalRggeaksgesdedddegeeeed.vakasgvpewgkkarkrqkkvlkkleeeae 121
                 ++ ++++++++ae++ +     + ++ + Rgge++  e+d+ddd  e++e  ++ a   ++  k+ + r +++l +  + ++
  CCE29089.1 101 RKLKNAKAEDAAERAPSlaGGKAATAVSGRGGEKE-AEEDDDDD--ENGEMaLEDALVRTQEQKQEEVRLRAMLVEAFDSEQ 179
                 44444444444444444543334566777888753.44444444..445555888888888888899999998877666555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.025
        PGA2  51 keeaeekaakkakvspnalRggeaksgesdedddegeeeedvakasgvpewgkkarkrqkkvlkkleeeaee 122
                 +eeaee +a+++ + p++lR++  +   + ++    e  +++ +a    +  +++r r k+++++le++ +e
  CCE29089.1 264 AEEAEEPEARRGPMRPDHLREAWRR--YKQTSI---EP-SHSVAAIRIRDNQRRSRARRKEYVENLERKVQE 329
                 4556666667999999999998865..222222...22.224567788888889999999999999887663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1306  (0.0728429); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.39
# Mc/sec: 4992.17
//
Query:       CCE29090.1  [L=321]
Description: probable GTP cyclohydrolase I [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-74  247.0   0.3    1.2e-73  246.3   0.3    1.3  1  GTP_cyclohydroI  GTP cyclohydrolase I
     0.0051   16.9   0.0       0.01   16.0   0.0    1.5  1  QueF             QueF-like protein
  ------ inclusion threshold ------
       0.67    8.7   6.3       0.78    8.5   6.3    1.1  1  Apt1             Golgi-body localisation protein domain
        1.5    7.3   6.3        1.8    7.0   6.3    1.1  1  Macoilin         Macoilin family
          2    9.3  10.6         42    5.0   0.0    2.4  2  Apc15p           Apc15p protein
        9.4    4.9   8.0         13    4.4   8.0    1.2  1  Presenilin       Presenilin


Domain annotation for each model (and alignments):
>> GTP_cyclohydroI  GTP cyclohydrolase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.3   0.3     4e-77   1.2e-73       3     178 ..     140     315 ..     138     316 .. 0.98

  Alignments for each domain:
  == domain 1  score: 246.3 bits;  conditional E-value: 4e-77
                      HHHHHHHHHTT--TTSTTTTTHHHHHHHHHHHHTGGGGS-G.GGGGSSEEETT--S-EEEEEEEEEEEETTT--EEEEEEEEEEE-TTEEE-HH CS
  GTP_cyclohydroI   3 eavreiLealgedpereglketpkRvakayeelfkgleedpkekvlkkvfeeekdemvlvkdiefsSlCeHHllpfigkahvaYiPkkkviGlS 96 
                       avr++Le +gedp+regl +tp+R+aka+  l++g++ d ke++ ++ f+e+++e+++vk+ie++SlCeHHl+pfigk+h++YiP+++viGlS
       CCE29090.1 140 GAVRTLLECVGEDPDREGLLDTPSRYAKALMFLTSGYQVDVKETINNALFNESHNELIIVKNIEIHSLCEHHLVPFIGKMHIGYIPHNTVIGLS 233
                      689**************************************99*************************************************** PP

                      HHHHHHHHHHSSEE-HHHHHHHHHHHHHHHH--SEEEEEEEEEEHHHHSSTT--TT-EEEEEEEEEHHHH-HHHHHHHHHHH CS
  GTP_cyclohydroI  97 klaRivdvvarrlqvQErlteqiadaleevlkpkgvavvieaehlCmtmrgvkkkesktvtsalrGefkedaalreefleli 178
                      kl+Ri++++arrlq+QErlt+++a+a+ e+lkp+gvavv+e++hlCm mrgv+++ ++t+ts++ G f++ +++r+efl+l+
       CCE29090.1 234 KLPRIAEMYARRLQIQERLTKEVANAIREILKPRGVAVVMESSHLCMVMRGVEQTATSTITSCMLGCFERSSKTRAEFLSLV 315
                      *******************************************************************************986 PP

>> QueF  QueF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.4e-06      0.01       4      59 ..     217     272 ..     214     276 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.4e-06
        QueF   4 atlvirYvpdkkvvelkslklYlisfrnrgifhEevvnrilddlvealkPkwlevv 59 
                 ++++i Y+p+++v+ l  l +    + +r + +E  ++++++ + e lkP+ + vv
  CCE29090.1 217 GKMHIGYIPHNTVIGLSKLPRIAEMYARRLQIQERLTKEVANAIREILKPRGVAVV 272
                 789***********************************************999886 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.3   0.00026      0.78     327     391 ..      17      81 ..       2     182 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00026
        Apt1 327 sssssssssssassssssssrssslelrlkpt.sstssssssessssssskkrsseesslessase 391
                 +++s+s ss+s+++++++s+++s++++++ +    + +s+  ++s+ss ++kr++ ++sl++ a++
  CCE29090.1  17 DTASVSGSSTSDKATRRQSRSRSHKNKKNGSHaRDEAQSNDANHSRSSARDKRRH-SNSLSKAARD 81 
                 2222222222222222222222222222222212333333333333333333333.3444433222 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.3   0.00061       1.8     300     370 ..      19      93 ..       3     145 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00061
    Macoilin 300 ksessgsesellveesvkskssssssssnknskkasagsagssnssskkhsessksvtsss....ssknskkqkl 370
                  s s +s+s+  ++ +++s+s+ ++++ ++  ++a+++ a+ s ss+++++++s+s ++++     +   kk+ +
  CCE29090.1  19 ASVSGSSTSDKATRRQSRSRSHKNKKNGSHARDEAQSNDANHSRSSARDKRRHSNSLSKAArdprDEPPTKKRAA 93 
                 344556777777788888888888888888889999999999999999999999999988843322222233333 PP

>> Apc15p  Apc15p protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   8.2     0.023        68       9      63 ..      32      81 ..      22     103 .. 0.59
   2 ?    5.0   0.0     0.014        42      74     112 ..     235     274 ..     219     278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.023
      Apc15p  9 rnpllsknesnksnsssernkklnngnatnkakernedqkksrrsgyapplsayn 63
                r + +s++++nk+n+s++r ++ +++ a++     +   + +rr++++ + +a  
  CCE29090.1 32 RRQSRSRSHKNKKNGSHARDEA-QSNDANH----SRSSARDKRRHSNSLSKAARD 81
                4456667777777777776666.4444444....334444444444445555554 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.014
      Apc15p  74 ggkldelrmeeeqmerrl.kaIrnlGsnwlkPiGvnKTle 112
                   +++e++++  q++ rl k+++n   + lkP Gv   +e
  CCE29090.1 235 LPRIAEMYARRLQIQERLtKEVANAIREILKPRGVAVVME 274
                 558999****99999998357*************986665 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   8.0    0.0043        13     230     287 ..      27      84 ..       5     136 .. 0.44

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0043
  Presenilin 230 aevaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessae 287
                 +++a++++++++++k++++ ++ ++e+++++++++++++++++++s++ s++a +  +
  CCE29090.1  27 SDKATRRQSRSRSHKNKKNGSHARDEAQSNDANHSRSSARDKRRHSNSLSKAARDPRD 84 
                 1111111111111111111111122222221111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1624  (0.0905795); expected 358.6 (0.02)
Passed bias filter:                      856  (0.0477439); expected 358.6 (0.02)
Passed Vit filter:                       131  (0.0073066); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 2405.08
//
Query:       CCE29091.1  [L=1746]
Description: related to regulator protein rum1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.1e-110  367.6  12.5   1.6e-105  353.1   9.4    2.2  2  PLU-1        PLU-1-like protein
    1.9e-43  147.5   0.3    3.9e-43  146.5   0.3    1.6  1  JmjC         JmjC domain, hydroxylase
    3.9e-21   75.5   0.0    9.6e-21   74.3   0.0    1.7  1  ARID         ARID/BRIGHT DNA binding domain
    1.3e-16   60.2  28.6    9.4e-11   41.4   3.8    3.2  3  PHD          PHD-finger
    1.5e-16   60.1   0.9    3.7e-16   58.8   0.9    1.7  1  JmjN         jmjN domain
    7.4e-14   51.9   3.7      2e-13   50.5   3.7    1.8  1  zf-C5HC2     C5HC2 zinc finger
     0.0042   16.7   5.7       0.11   12.2   0.3    2.9  2  zf-PHD-like  PHD/FYVE-zinc-finger like domain
  ------ inclusion threshold ------
       0.06   13.5   0.5       0.17   12.1   0.5    1.7  1  DUF5333      Family of unknown function (DUF5333)
       0.41   10.8  18.6       0.78    9.9   5.5    3.0  2  PHD_4        PHD-finger
        3.5    7.2   9.6        0.2   11.2   0.3    2.7  2  PHD_2        PHD-finger


Domain annotation for each model (and alignments):
>> PLU-1  PLU-1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.1   9.4  8.7e-109  1.6e-105       2     339 .]     926    1274 ..     925    1274 .. 0.99
   2 !   15.5   0.1   4.2e-06    0.0076      77     326 ..    1375    1421 ..    1336    1435 .. 0.66

  Alignments for each domain:
  == domain 1  score: 353.1 bits;  conditional E-value: 8.7e-109
       PLU-1    2 WaekveelleeeekpsLkelrallneaekikfplkellekLktfvkdaekwvekaqqllskkqrtRrkne.............aeeeeeekeklsle 85  
                  W+ek++++l ee +psLk lra+l+e+e+i+f+l++l + Lk+fv+++++wve+a++++++kq++Rrkne             a +e++e+e + ++
  CCE29091.1  926 WEEKYAKMLVEETTPSLKCLRAILHEGERIPFELPSL-PILKEFVDRCNDWVEEATNYTVRKQQNRRKNEkawqsgmrksignACQEQKEREARHVS 1021
                  *************************************.*********************************************************** PP

       PLU-1   86 elekLleeldslpFdlpeieqLkelleeieefqkkarellseesedssieeleklieeGksfnvelpeleeLkkvleqlkWleevrevreekkqltl 182 
                  ++++Ll+ +++++Fd+pei+qL+e++ +i+efq +a ++l++ +  +  e++e+l+eeG+sfnv++pe+e+L+kvleq +W+ ++r+ r     l+l
  CCE29091.1 1022 NIHRLLRDAEHIGFDCPEIAQLRERAAAIKEFQVNAARVLEN-TIAIPMETIEELLEEGRSFNVDTPEIERLSKVLEQTRWNAKARTNR--GVVLSL 1115
                  *****************************************9.8899*************************************99999..777*** PP

       PLU-1  183 eevkeLieeGeelaippekeellaelqelleaaekweekakelLeareklsleeLeallneaq..eipvslpslaaleeilkkarewqrkveeliks 277 
                  ++v+++ie+G++l+i p ++++l +++++l+a+e we ka++l+  +e +++++Leal+n+++   +pvs+++la+++ il k+re++r++ e++ +
  CCE29091.1 1116 QDVRDIIEDGQRLEI-PSYNDHLTFYRDQLQAGETWEIKAQQLIT-AEVVHYPQLEALSNQVHvnALPVSQDTLAQVDRILYKQREAHRQILEITHR 1210
                  **************9.778*************************9.****************999******************************** PP

       PLU-1  278 sq..daaerptlseleellkkgeslpvkleeleqLekelkraedWlekgkklFlkknaplslLe 339 
                  ++  ++++rp++ e++++++++e+l++k++++ +Le+e kr+edW++kgkklF+k napl++L+
  CCE29091.1 1211 CRdkSFRNRPKYVEVVDVIRNLEDLNSKPNGTLDLENERKRHEDWMRKGKKLFGKSNAPLHILK 1274
                  **999*********************************************************96 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.2e-06
       PLU-1   77 eekeklsleelekLleeldslpFdlpeieqLkelleeieefqkkarellseesedssieeleklieeGksfnvelpeleeLkkvleqlkWleevrev 173 
                  ++                                                                                               
  CCE29091.1 1375 RDA---------------------------------------------------------------------------------------------- 1377
                  333.............................................................................................. PP

       PLU-1  174 reekkqltleevkeLieeGeelaippekeellaelqelleaaekweekakelLeareklsleeLeallneaqeipvslpslaaleeilkkarewqrk 270 
                                                                                                                   
  CCE29091.1    - -------------------------------------------------------------------------------------------------    -
                  ................................................................................................. PP

       PLU-1  271 veelikssqdaaerptlseleellkkgeslpvkleeleqLekelkraedWlekgkk 326 
                               rp+l++l +l +++++lp+++ee e+L++++++a+ +++++++
  CCE29091.1 1378 ------------ARPKLEDLMSLADEMHQLPFQPEEEEVLNNIIDNAQTFRDRITR 1421
                  ............45666666666666666666666666666666666666666655 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   0.3   2.2e-46   3.9e-43       1     114 []     627     743 ..     627     743 .. 0.99

  Alignments for each domain:
  == domain 1  score: 146.5 bits;  conditional E-value: 2.2e-46
                 EEEEE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHHHHHHHH...HHCCSTTGCCTTTCEE-HHHHHHTT---EEEEE-TT-EEEE-TT CS
        JmjC   1 wlylgmpksttpwhiedqglySinylhfgapkvWyiipeekkeklekvlskk...nskeqpdllrhkstlispkqlekegipvyrfvqkpgefVfvfpg 96 
                 w+y+gm +st++wh ed+  yS+ny+hfga+k+Wy+ip+e++ek+e ++++     ++ qpdll +++tl++p+ql+k+g++vy + q++g+fV++fp+
  CCE29091.1 627 WVYVGMIFSTFCWHNEDHYAYSANYQHFGATKTWYGIPGEDAEKFEAAMKEAvpeLFETQPDLLFQLVTLLTPEQLQKAGVRVYALDQRAGQFVVTFPQ 725
                 9***************************************************9*9999***************************************** PP

                 -EEEEEESSSEEEEEEEE CS
        JmjC  97 ayHsvfnlgfniaeavnf 114
                 ayH++fn+gfn++eavnf
  CCE29091.1 726 AYHAGFNHGFNFNEAVNF 743
                 *****************9 PP

>> ARID  ARID/BRIGHT DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   5.3e-24   9.6e-21       4      90 .]     155     239 ..     152     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 5.3e-24
                 HHHHHHHHHHHHTTS.SSS----SSSS-STTHHHHHHTTTSSHHHHTT.CHHHHHHHHHTS-..-.......HHHHHHHHHHHHHHHH CS
        ARID   4 eFlstLkqfhenrgt.lkkiPviggkevdlykLyraVikrGGfrkvtqknkWeevaqklglpredpeasesvaqalksiYeryLlpyE 90 
                 ++l+ L +fh+++g+ l+++P +++k++dly+L +aV +rGGf+kv++ +kW+e+ ++lg++ +   +s s++++lk+ Y+r+L pyE
  CCE29091.1 155 TYLDGLLKFHKQQGSnLHRLPYVDKKPLDLYRLKKAVESRGGFDKVCKLKKWAEIGRDLGYSGK--IMS-SLSTSLKNSYQRWLCPYE 239
                 7999***********8899***************************9999***********854..365.9****************9 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   3.8   5.2e-14   9.4e-11       1      50 [.     454     500 ..     454     502 .. 0.94
   2 ?   -5.2   1.1        10   1.8e+04      45      50 ..     852     857 ..     841     858 .. 0.55
   3 !   31.4   8.8   7.2e-11   1.3e-07       1      50 [.    1323    1368 ..    1323    1370 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 5.2e-14
                 SBTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD   1 rCavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50 
                 rC+ C++  +e++ l++C++C+++fH  Cl+ppl+  +kpe ew C++C 
  CCE29091.1 454 RCENCGR-GEESGALLVCETCDNSFHGPCLDPPLK--RKPEAEWNCPRCL 500
                 6******.99*************************..777789******5 PP

  == domain 2  score: -5.2 bits;  conditional E-value: 10
                 SSTTTH CS
         PHD  45 lCekCk 50 
                 +C+ Ck
  CCE29091.1 852 CCTYCK 857
                 455554 PP

  == domain 3  score: 31.4 bits;  conditional E-value: 7.2e-11
                  SBTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD    1 rCavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50  
                  +C +C+k   e + ++ C+ C++w+H kClk+    + k++++++C+ C+
  CCE29091.1 1323 FC-ICRK--IEAGMMIECELCHEWYHYKCLKIARG-KVKEDDKYTCPICD 1368
                  69.****..789*********************87.444445*******8 PP

>> JmjN  jmjN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.9     2e-19   3.7e-16       1      34 []      86     119 ..      86     119 .. 0.99

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 2e-19
                 -EE---HHHHC-HHHHHHHHHHHHCCCSEEEE-- CS
        JmjN   1 PvFyPTeeEFkdplkYiekieplgekyGIcKIvP 34 
                 P+++PTeeE++dpl+Y++ki p++ +yGIcKI+P
  CCE29091.1  86 PTYRPTEEEWRDPLEYMKKITPEASQYGICKIIP 119
                 9********************************9 PP

>> zf-C5HC2  C5HC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   3.7   1.1e-16     2e-13       1      52 [.     853     910 ..     853     912 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.1e-16
    zf-C5HC2   1 CslCkaycYlSavvckkcpskvvCleH..akelckecppknrv......llyRytdeeLe 52 
                 C++Ck+++YlS+++c+++ +k++C+ H  ++ +c + ++++r+      l+yR +de L 
  CCE29091.1 853 CTYCKTFAYLSRFKCEHS-GKTLCIAHagYHACC-DATEEKRFggeghtLIYRVPDESLA 910
                 ******************.*********999***.59999999999999********997 PP

>> zf-PHD-like  PHD/FYVE-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.3   5.9e-05      0.11       1      36 [.     455     488 ..     455     492 .. 0.89
   2 !    5.7   1.0    0.0059        11       7      32 ..    1327    1351 ..    1322    1362 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.9e-05
  zf-PHD-like   1 CdtCaeskdeekgqlvyCqGCslsyhkaClGkRsaR 36 
                  C+ C+  +  e g+l++C  C +s+h  Cl +  +R
   CCE29091.1 455 CENCGRGE--ESGALLVCETCDNSFHGPCLDPPLKR 488
                  999*9988..99******************876665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0059
  zf-PHD-like    7 skdeekgqlvyCqGCslsyhkaClGk 32  
                   +k  e g+++ C  C   yh +Cl  
   CCE29091.1 1327 RK-IEAGMMIECELCHEWYHYKCLKI 1351
                   33.679*****************964 PP

>> DUF5333  Family of unknown function (DUF5333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   9.3e-05      0.17      12      79 ..     995    1062 ..     987    1071 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-05
     DUF5333   12 gllavaiAdeirkeCdsisarllkalseleslkakarelGYseaeieayvddkaekarlraeaeayla 79  
                  +  + ++ ++i + C++ + r  + +s++++l ++a++ G+   ei ++ +  a  ++++ +a+++l+
  CCE29091.1  995 KAWQSGMRKSIGNACQEQKEREARHVSNIHRLLRDAEHIGFDCPEIAQLRERAAAIKEFQVNAARVLE 1062
                  556788999*************************************9999999999998888887776 PP

>> PHD_4  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   5.2     0.011        19      25      67 ..     462     499 ..     451     500 .. 0.83
   2 ?    9.9   5.5   0.00043      0.78      28      67 ..    1332    1367 ..    1317    1368 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.011
       PHD_4  25 etpsslmeCsvCyeivHpeClkekegegvvnedlpnsWeCpkC 67 
                 e++ +l+ C+ C +  H  Cl+       ++      W+Cp+C
  CCE29091.1 462 EESGALLVCETCDNSFHGPCLDP-----PLKRKPEAEWNCPRC 499
                 566789***************88.....466677789****** PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00043
       PHD_4   28 sslmeCsvCyeivHpeClkekegegvvnedlpnsWeCpkC 67  
                   +++eC++C+e  H +Clk   + g v+ed    + Cp C
  CCE29091.1 1332 GMMIECELCHEWYHYKCLKI--ARGKVKEDD--KYTCPIC 1367
                  5689**************99..778888875..4678877 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00011       0.2       3      35 ..     466     499 ..     464     500 .. 0.81
   2 ?   -1.5   3.9         1   1.9e+03       3      35 ..    1333    1367 ..    1331    1368 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
       PHD_2   3 pllsCdkCsvaVHasCYGvskesdgee.WlCrrC 35 
                  ll+C  C  ++H  C   + + + e  W C rC
  CCE29091.1 466 ALLVCETCDNSFHGPCLDPPLKRKPEAeWNCPRC 499
                 69**************976655554434****** PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1
       PHD_2    3 pllsCdkCsvaVHasCYGvskesdgee..WlCrrC 35  
                   ++ C  C    H +C ++   +++e+  ++C  C
  CCE29091.1 1333 MMIECELCHEWYHYKCLKIARGKVKEDdkYTCPIC 1367
                  6899***************9988877678999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.96u 0.26s 00:00:01.22 Elapsed: 00:00:00.44
# Mc/sec: 11886.97
//
Query:       CCE29092.1  [L=207]
Description: uncharacterized protein CPUR_02783 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.089   13.0   5.2       0.14   12.5   5.2    1.3  1  zf-HC5HC2H  PHD-like zinc-binding domain


Domain annotation for each model (and alignments):
>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   5.2   7.6e-06      0.14      24      76 ..      94     150 ..      81     164 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.6e-06
  zf-HC5HC2H  24 iedvekikkerkklkCylCkkk....vGaciqCskkkCkkafHvtCakeagllleee 76 
                 +++ ++i + +++  C+ C +     +G    C +  C+++ H++C+ ++ l  + +
  CCE29092.1  94 LDKARSIIEFEQQGCCVHCAQDlesdNGLHALCPHDGCQAMGHLVCWSQHALSGDRS 150
                 566778888899999*****7666679*********************998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1493.47
//
Query:       CCE29093.1  [L=506]
Description: related to RNA splicing factor PRP9 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-78  261.3   0.5    1.2e-77  259.9   0.5    1.7  1  DUF3449          Domain of unknown function (DUF3449)
      3e-25   88.5   2.8    6.9e-25   87.4   2.8    1.6  1  SF3A3            Pre-mRNA-splicing factor SF3A3, of SF3a comp
      3e-13   49.4   0.2      3e-13   49.4   0.2    2.2  2  SF3a60_bindingd  Splicing factor SF3a60 binding domain
      1e-09   38.4   7.3    3.7e-07   30.3   2.9    2.6  2  zf-C2H2_jaz      Zinc-finger double-stranded RNA-binding
    2.9e-06   27.5   2.5     0.0015   18.8   0.9    2.6  2  zf-met           Zinc-finger of C2H2 type
     0.0011   19.3   5.3      0.018   15.3   0.4    3.2  2  zf-C2H2_2        C2H2 type zinc-finger (2 copies)
     0.0047   17.0  19.8      0.022   14.8   1.7    4.0  5  PRP9_N           Pre-mRNA-splicing factor PRP9 N-terminus
     0.0094   16.7   4.9        1.1   10.2   0.2    3.2  2  zf-C2H2_4        C2H2-type zinc finger
  ------ inclusion threshold ------
      0.037   14.5   4.1        5.1    7.7   0.3    3.1  2  zf-C2H2          Zinc finger, C2H2 type
       0.32   11.0   5.0       0.97    9.4   0.4    2.6  2  zf-C2HC_2        zinc-finger of a C2HC-type
        1.2    9.0   5.0       0.39   10.5   0.5    2.3  2  zf-U1            U1 zinc finger


Domain annotation for each model (and alignments):
>> DUF3449  Domain of unknown function (DUF3449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.9   0.5   7.3e-81   1.2e-77       2     184 .]     317     505 ..     316     505 .. 0.92

  Alignments for each domain:
  == domain 1  score: 259.9 bits;  conditional E-value: 7.3e-81
                 HHHHHHHHHHTHHHHHHHHHHHHHHHT--HHHHHHH...............HH--SS--B-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3449   2 elkikklaellskeieetkenverkqaltaeereee.eeeeeeek......keeeedeeeeeeeekiynplnlplgwdgkPipyWLykLhgLgkeykCe 93 
                 e+++k+l+ ++s+e+++t+ nverkq++t++ere+e e +  +e+        e +d++e+++++kiynpl++plgwdgkPip+WLy+LhgLg+e++Ce
  CCE29093.1 317 EHRVKRLVGAMSTERSDTRVNVERKQGMTKREREQElE-NFYNESdlprenVGEGDDDDEDDDDDKIYNPLKVPLGWDGKPIPFWLYRLHGLGVEFPCE 414
                 999*********************************52.33333335543333777777789999********************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3449  94 iCgnavYkGrkaFekHFseerHaeglkcLgientklfkeitkiedaleLweklkkekkkekakeeeeveveDeeGnvmskkvYedLkkqgl 184
                 iCgn+vYkGr+aFekHF+e+rH+++lkcLgi+n +lf++itk+++a++Lwek+++ekk++k++e + v++eD eGnvm++kvY dL+kqgl
  CCE29093.1 415 ICGNYVYKGRRAFEKHFNEARHIYNLKCLGITNPTLFRDITKMDEAQRLWEKIQREKKQSKMDEGSVVQMEDGEGNVMPEKVYYDLQKQGL 505
                 ******************************************************************************************8 PP

>> SF3A3  Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   2.8   4.2e-28   6.9e-25       2      78 ..     129     210 ..     128     211 .. 0.94

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 4.2e-28
       SF3A3   2 FsgeEqyGkylDLnelyeeylnlkeik.ldYlqYLesfdkf....seipkkqkkskeYkeYlkeLleYLesfikrtqpLedl 78 
                 FsgeE+yG+++DLn++ye+ylnl+++k  +YlqYLe+fd+f      +++++k +++Y +Y+ eL++YLe+f+++t+pLe++
  CCE29093.1 129 FSGEESYGRFFDLNTCYESYLNLPNVKrHTYLQYLEHFDNFtpayCGVKRAEKLTDHYFNYVGELAHYLEDFMRKTRPLENT 210
                 ************************9977*************887777789*****************************997 PP

>> SF3a60_bindingd  Splicing factor SF3a60 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.2   1.8e-16     3e-13       1      27 []      73      99 ..      73      99 .. 0.97
   2 ?   -1.2   0.3       1.2   1.9e+03       7      13 ..     352     358 ..     351     359 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 1.8e-16
  SF3a60_bindingd  1 sisggDpFseFYkrLkeIKdyHrkYPN 27
                     ++s+gDpF+ FYk+L+eI+++H+kYPN
       CCE29093.1 73 QLSTGDPFDLFYKQLGEIREHHAKYPN 99
                     68************************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
  SF3a60_bindingd   7 pFseFYk 13 
                      ++++FY+
       CCE29093.1 352 ELENFYN 358
                      689***7 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   2.9   2.2e-10   3.7e-07       3      27 .]     254     278 ..     253     278 .. 0.97
   2 !    9.9   0.1   0.00056      0.92       2      26 ..     411     436 ..     410     437 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 2.2e-10
                  BBTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz   3 YCvlCdKyFksenaldnHlkSKkHK 27 
                  +C++C++ Fk+en++ nHl ++kHK
   CCE29093.1 254 WCKYCEREFKNENVYNNHLPGRKHK 278
                  6***********************9 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00056
                  CBBTTTT.BBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz   2 fYCvlCd.KyFksenaldnHlkSKkH 26 
                  f C++C    +k  +a+++H++  +H
   CCE29093.1 411 FPCEICGnYVYKGRRAFEKHFNEARH 436
                  78********************9888 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.9   9.2e-07    0.0015       2      25 .]     254     277 ..     253     277 .. 0.97
   2 !    7.5   0.0    0.0033       5.4       3      21 ..     413     432 ..     411     432 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 9.2e-07
      zf-met   2 yCelCnvtfnsesqlksHlqGKkH 25 
                 +C+ C + f++e+++++Hl G+kH
  CCE29093.1 254 WCKYCEREFKNENVYNNHLPGRKH 277
                 9*********************** PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0033
      zf-met   3 CelC.nvtfnsesqlksHlq 21 
                 Ce+C n +++++ +++ H++
  CCE29093.1 413 CEICgNYVYKGRRAFEKHFN 432
                 ******************87 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.4   1.1e-05     0.018      52      80 ..     254     282 ..     248     295 .. 0.81
   2 ?    4.7   0.1     0.022        36      49      76 ..     409     437 ..     401     443 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
   zf-C2H2_2  52 eClyCekefkslealreHmkkkgHckine 80 
                  C yCe+efk+ + +++H+  ++H+k +e
  CCE29093.1 254 WCKYCEREFKNENVYNNHLPGRKHKKAEE 282
                 6*************************866 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.022
   zf-C2H2_2  49 ekleClyCeke.fkslealreHmkkkgHc 76 
                  ++ C +C++   k ++a+++H ++++H 
  CCE29093.1 409 VEFPCEICGNYvYKGRRAFEKHFNEARHI 437
                 5688****999899**************7 PP

>> PRP9_N  Pre-mRNA-splicing factor PRP9 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.9   2.9e-05     0.047       2      29 ..       3      30 ..       2      38 .. 0.93
   2 !   14.8   1.7   1.4e-05     0.022      73     138 ..      37     107 ..      30     114 .. 0.75
   3 ?   -0.7   0.0       0.8   1.3e+03      77      97 ..     192     212 ..     184     244 .. 0.74
   4 ?   -1.1   0.4       1.1   1.8e+03      73     118 ..     315     360 ..     304     384 .. 0.54
   5 ?   -3.3   0.1       5.1   8.4e+03      56      65 ..     465     474 ..     449     484 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.9e-05
      PRP9_N  2 lleerrslleeleviEdaIssRlqRnPe 29
                +lee+r++ e+le +E++I++R++ +P+
  CCE29093.1  3 ILEEQRHIHEDLERLEQGIADRVRDEPK 30
                69*********************99996 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.4e-05
      PRP9_N  73 lQqhEinlFledykkklksleklkeeadseelkdke.....kslekfkelleeikekekd..seseeldinek 138
                   +hEi+ +l++++++ ++l ++ ++ +  + ++ +     + ++ f ++l ei+e++++  +  e+++ +e+
  CCE29093.1  37 NRDHEIAQLLDRIQNQSNELLNIYKDDNGARGSELQqlstgDPFDLFYKQLGEIREHHAKypN--EQAENSEQ 107
                 568*****************9998776665555444677889***************999543..33333332 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.8
      PRP9_N  77 EinlFledykkklksleklke 97 
                 E++ +led+++k + le++ +
  CCE29093.1 192 ELAHYLEDFMRKTRPLENTDK 212
                 777888888888888877643 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.1
      PRP9_N  73 lQqhEinlFledykkklksleklkeeadseelkdkekslekfkell 118
                   +h ++ ++  +  ++++++   e+++  + +++e++le+f +  
  CCE29093.1 315 EREHRVKRLVGAMSTERSDTRVNVERKQGMTKREREQELENFYNES 360
                 5555566666555555555544445555556666677788776543 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 5.1
      PRP9_N  56 nkiykskksk 65 
                 +ki+++kk+ 
  CCE29093.1 465 EKIQREKKQS 474
                 2333333322 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.2    0.0007       1.1       2      20 ..     254     272 ..     253     273 .. 0.92
   2 !    7.2   0.1    0.0066        11       1      20 [.     411     431 ..     411     433 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0007
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHl 20 
                 +C++C + F++ + +++Hl
  CCE29093.1 254 WCKYCEREFKNENVYNNHL 272
                 7**********99999996 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0066
   zf-C2H2_4   1 fkCpiC.gksFsskkaLlrHl 20 
                 f+C+iC + +++ ++a+ +H+
  CCE29093.1 411 FPCEICgNYVYKGRRAFEKHF 431
                 89****9999999999***97 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.4    0.0061       9.9       3      20 ..     255     272 ..     255     272 .. 0.91
   2 ?    7.7   0.3    0.0032       5.1       1      21 [.     411     432 ..     411     436 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0061
                 ETTTTEEESSHHHHHHHH CS
     zf-C2H2   3 CpdCgksFkrksnLkrHi 20 
                 C++C + Fk+   +++H+
  CCE29093.1 255 CKYCEREFKNENVYNNHL 272
                 **********99888885 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0032
                 EEETTTT.EEESSHHHHHHHHH CS
     zf-C2H2   1 ykCpdCg.ksFkrksnLkrHir 21 
                 ++C++Cg +++k +  +++H +
  CCE29093.1 411 FPCEICGnYVYKGRRAFEKHFN 432
                 89******************76 PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.4   0.00059      0.97       5      22 ..     255     273 ..     255     274 .. 0.96
   2 ?    2.8   0.4     0.068   1.1e+02       3       9 ..     411     417 ..     410     418 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00059
   zf-C2HC_2   5 CpkCgRsF.npdrlekHep 22 
                 C++C R F n+    +H p
  CCE29093.1 255 CKYCEREFkNENVYNNHLP 273
                 *****************87 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.068
   zf-C2HC_2   3 vpCpkCg 9  
                  pC++Cg
  CCE29093.1 411 FPCEICG 417
                 59****9 PP

>> zf-U1  U1 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   0.00024      0.39       4      33 ..     253     280 ..     251     283 .. 0.87
   2 ?   -0.9   0.4       0.9   1.5e+03       6      33 ..     413     439 ..     411     441 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00024
                 EEETTTTEEESS-SHHHHHHHHTSHHHHHH CS
       zf-U1   4 YyCdYCdiyLthDspsvRksHngGrkHken 33 
                 ++C+YC+   +++   v   H  GrkHk++
  CCE29093.1 253 KWCKYCEREFKNEN--VYNNHLPGRKHKKA 280
                 68******997776..778*********97 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.9
                 ETTTTEEESS-SHHHHHHHHTSHHHHHH CS
       zf-U1   6 CdYCdiyLthDspsvRksHngGrkHken 33 
                 C+ C  y+ + + ++ + H + + H+ n
  CCE29093.1 413 CEICGNYVYKGR-RAFEKHFNEARHIYN 439
                 999*99998888.555778777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1352  (0.0754086); expected 358.6 (0.02)
Passed bias filter:                      720  (0.0401584); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3427.78
//
Query:       CCE29094.1  [L=402]
Description: probable translation initiation factor eIF-4A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-42  143.6   0.2    8.5e-42  142.9   0.2    1.3  1  DEAD           DEAD/DEAH box helicase
    5.8e-33  113.6   0.1    2.1e-32  111.7   0.0    1.9  2  Helicase_C     Helicase conserved C-terminal domain
    0.00051   19.8   0.1    0.00076   19.3   0.1    1.3  1  AAA_30         AAA domain
     0.0012   18.9   0.0     0.0024   17.9   0.0    1.5  1  ResIII         Type III restriction enzyme, res subunit
     0.0016   18.8   0.1      0.011   16.0   0.1    2.2  2  AAA_19         AAA domain
  ------ inclusion threshold ------
      0.057   13.4   0.3       0.18   11.7   0.0    2.0  2  Flavi_DEAD     Flavivirus DEAD domain
       0.06   11.5   0.1      0.093   10.8   0.1    1.2  1  DUF5393        Family of unknown function (DUF5393)
      0.075   12.9   0.0       0.13   12.1   0.0    1.4  1  Helicase_RecD  Helicase
      0.076   12.4   0.0       0.15   11.5   0.0    1.4  1  TniB           Bacterial TniB protein
       0.13   12.5   0.8       0.65   10.3   0.8    2.0  1  AAA_22         AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.9   0.2   4.7e-45   8.5e-42       2     173 ..      53     215 ..      52     218 .. 0.94

  Alignments for each domain:
  == domain 1  score: 142.9 bits;  conditional E-value: 4.7e-45
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 ++Q++ai ++ +g+d +++a+ G+GKT+ f+i +lq + + +  ++++al+++PtreLa q+ + +  +++y++++++++igg++  ++++kld g +i
  CCE29094.1  53 AVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI-D-TAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHI 149
                 69*********************************999.4.477777**************************************************** PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 v gtpgr++d++++++l+++++++lVlDEad+ll++gf+++i  + + lp          qv+v+SATlp dv
  CCE29094.1 150 VSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLP-------PATQVVVVSATLPYDV 215
                 *************************************************4.......4557*********666 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.3   4.1e+03      10      31 ..      90     111 ..      84     140 .. 0.67
   2 !  111.7   0.0   1.2e-35   2.1e-32       2     111 .]     254     362 ..     253     362 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.3
                 HHHTTTTSEEEEEESSHHHHHH CS
  Helicase_C  10 lkleeeggkilifvntidrlek 31 
                 +++ +++ ++l+ ++t++ + +
  CCE29094.1  90 IDTAVRETQALVLSPTRELATQ 111
                 4566788999999999995433 PP

  == domain 2  score: 111.7 bits;  conditional E-value: 1.2e-35
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 k+++l++l+  +    +++if+nt+++++  ++ ++e  +++v  +hg++pq+er+ i+++f++g+s+vLi+tdv +rGid+++v+lVin+dlp n ++
  CCE29094.1 254 KFDTLCDLY-DTLTITQAVIFCNTRRKVDWlTDKMREA-NFTVSSMHGDMPQRERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNREN 350
                 677888887.788999************7666666433.6*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 yi+riGR gR+g
  CCE29094.1 351 YIHRIGRSGRFG 362
                 **********86 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   4.2e-07   0.00076       4      98 ..      53     180 ..      50     207 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.2e-07
      AAA_30   4 aeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaa..ggrviglAptgkaAkvLa....................eelgieastiakllkr 79 
                 a Q++a+ ++++++d  +++++  GtGKt + +    +++++a  + + ++l+pt + A +++                    +               
  CCE29094.1  53 AVQSRAIVQVCKGRD--TIAQAQSGTGKTATFSISmLQVIDTAvrETQALVLSPTRELATQIQsvvmalgdymnvqchaciggT--------------- 134
                 67************9..9**********9765543344444443568899************9444333333332222222110............... PP

      AAA_30  80 lk............................grarlepgtllivDEag 98 
                  +                            ++ r ++ ++l+ DEa 
  CCE29094.1 135 -NvgedirkldygqhivsgtpgrvadmirrRHLRTRHIKMLVLDEAD 180
                 .1233333333444466666666667775433344444888888885 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.3e-06    0.0024      25     168 ..      66     210 ..      50     213 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.3e-06
                 SEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--.......-SEEEE.EHHHHHHT CS
      ResIII  25 krglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke....igkkvsgdkkkakekdstnkkilvt.tiqsldad 117
                 +  + ++  GtGKT +  +++ + + ++ +e ++l+l p+++l  q ++ ++ + +  + +    ig+   g+  ++     +  + +v+ t  ++   
  CCE29094.1  66 RDTIAQAQSGTGKTATFsISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQchacIGGTNVGEDIRK----LDYGQHIVSgTPGRVADM 160
                 457789999*******9677777777777777****************66655544333333333333333333322....344444444055555444 PP

                 H........HHHTTT-SEEEEETGGGTTS.TTTHH.H...HHT---.SEEEEEESS CS
      ResIII 118 seeeeeeseellrdrfdviiiDEaHrlgakkswre.i...lekfke.avllglTAT 168
                 +      + +l+  ++++++ DEa  l   k +re i    +++++   ++ ++AT
  CCE29094.1 161 I-----RRRHLRTRHIKMLVLDEADELLN-KGFREqIydvYRYLPPaTQVVVVSAT 210
                 4.....56667777777999999988888.54444363335555552334456676 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   6.4e-06     0.011       2      68 ..      56     122 ..      55     208 .. 0.67
   2 ?    0.2   0.0      0.47   8.3e+02      42      75 ..     267     300 ..     254     393 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.4e-06
      AAA_19   2 reave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae 68 
                  +a+   +k +  +  a  GtGKT +    +  ++++  +   + l++++t+  a +++  + alg  
  CCE29094.1  56 SRAIVqVCKGRDTIAQAQSGTGKTATFSISMLQVIDTAVR-ETQALVLSPTRELATQIQSVVMALGDY 122
                 5566438899999999***************999999955.69***************9988555443 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.47
      AAA_19  42 peeillvaftgrAakelrerlaalgaeatTiHrl 75 
                   + ++ + t+r ++ l++++++++   + +H+ 
  CCE29094.1 267 ITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGD 300
                 5788999999999999999998888888888854 PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0001      0.18       2      53 ..      63     116 ..      62     143 .. 0.77
   2 ?   -2.7   0.0       2.8     5e+03      73     107 ..     257     293 ..     217     301 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
                 XX--EEEEE--TTS-TTTTHHHHHHH..HHHHTT--EEEEESSHHHHHHHHHHT CS
  Flavi_DEAD   2 rkkkltvldlhPGaGktrkvlpelvk..eaierrlrtlvLaPtrvvlaemeeal 53 
                 +k++ t+ ++  G+Gkt  +  ++++  +++ r+ ++lvL+Ptr  ++ ++  +
  CCE29094.1  63 CKGRDTIAQAQSGTGKTATFSISMLQviDTAVRETQALVLSPTRELATQIQSVV 116
                 6788899999*******99865554422445577899*******9998887654 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
                 -SEEEEEHHHHHHHHHH..T------SEEEEETTT-- CS
  Flavi_DEAD  73 elvdvmchatftkrlls..pvrkknyeliimDeahfl 107
                  l d+    t+t+ ++     rk+++    m ea f+
  CCE29094.1 257 TLCDLYDTLTITQAVIFcnTRRKVDWLTDKMREANFT 293
                 4555555555555555422334445555555555554 PP

>> DUF5393  Family of unknown function (DUF5393)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   5.2e-05     0.093     102     178 ..      38     120 ..       9     136 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.2e-05
     DUF5393 102 s.....lsrgrksPsaqdarvgddvsdGegivvdaeslspsavtqd.silgesrsaelegladllspaklavtelaldgegla 178
                 +      + g  sPsa ++r+  +v +G++ + +a+s +  ++t + s+l  + +a  e+ a +lsp++  +t++ +  + l+
  CCE29094.1  38 NllrgiYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSiSMLQVIDTAVRETQALVLSPTRELATQIQSVVMALG 120
                 233444566889****99*******************988777655277888999**************99999876666665 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.1e-05      0.13       3      99 ..      71     179 ..      69     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.1e-05
  Helicase_RecD   3 tAdRGRGKSaalGlalaaliaegk..snilvtapskenvktlfeflakglealglke...........eekkkkaekaelrvr.kqrieyiapdel 84 
                    +A+ G+GK+a+  + + ++i ++   ++ lv +p++e ++++ + + +  + ++++              +k +  ++ ++   ++  + i+ ++l
     CCE29094.1  71 QAQSGTGKTATFSISMLQVIDTAVreTQALVLSPTRELATQIQSVVMALGDYMNVQChaciggtnvgeDIRKLDYGQHIVSGTpGRVADMIRRRHL 166
                    6999****************9987779**********99999999977766666665777776655442222222222233333444444444444 PP

  Helicase_RecD  85 lklkeqadllvvDEA 99 
                     ++  + ++lv DEA
     CCE29094.1 167 RTR--HIKMLVLDEA 179
                    443..4688888888 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.2e-05      0.15     112     158 ..     163     207 ..     150     211 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.2e-05
        TniB 112 lrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipiv 158
                  r lr+ ++++L++DE ++ll+     ++++  + ++L    ++ +v
  CCE29094.1 163 RRHLRTRHIKMLVLDEADELLNKGF--REQIYDVYRYLPPATQVVVV 207
                 4689*****************6555..55566777776666666555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.8   0.00036      0.65      13     110 ..      73     189 ..      68     209 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00036
      AAA_22  13 esGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka....................erlsseell.ealeqalrara 90 
                 +sGtGKT +    + q  ++ + +e ++ v++ t    t  +++  +l   ++++++a                               ++++ +r+r+
  CCE29094.1  73 QSGTGKTATFSISMLQV-IDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHAciggtnvgedirkldygqhiV-----SGTpGRVADMIRRRH 165
                 56666666666555554.2222222233333333333334444444444444444444666666666666666444442.....223333333333333 PP

      AAA_22  91 v....ielliiDEaqhlrseeale 110
                      i++l++DEa+ l ++   e
  CCE29094.1 166 LrtrhIKMLVLDEADELLNKGFRE 189
                 333445**********53333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2786.80
//
Query:       CCE29095.1  [L=507]
Description: uncharacterized protein CPUR_02786 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-180  599.4   0.0   3.6e-180  599.2   0.0    1.0  1  DUF1688   Protein of unknown function (DUF1688)


Domain annotation for each model (and alignments):
>> DUF1688  Protein of unknown function (DUF1688)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  599.2   0.0    2e-184  3.6e-180       1     422 []      73     507 .]      73     507 .] 0.99

  Alignments for each domain:
  == domain 1  score: 599.2 bits;  conditional E-value: 2e-184
     DUF1688   1 yLrslkavRerckkvlelakegklehfdvdeskleevadfvvkvikrdygpdlksiPphgRwrHfevggvdriaelleklkkekdelekarrliDLflv 99 
                 yLrsl avRer++ +le++ke++l+hfdvd skl++v++fv+ +ikrdy++ +++iP hgR++Hf+vgg+dria+ll+++ +++d++e+++rliDLflv
  CCE29095.1  73 YLRSLGAVRERSRIILERTKENQLNHFDVDLSKLPDVVNFVAGLIKRDYDAPFTAIPGHGRYQHFSVGGRDRIADLLSTWPDSVDNEERCHRLIDLFLV 171
                 8************************************************************************************************** PP

     DUF1688 100 svLLDagagekwkykekesgekykrseGlavaslemFkaglfssdeeeklrvdaegLkkltaeklakalqvseenplvGlegRaelLkrLgealeekpe 198
                 svLLDagag +w+yk+kesg++y+rseGla+aslemFk+glfss++ +k++vd+ gL+klt ekl+ +lq++++n+l+GlegR+elL rL++al+++++
  CCE29095.1 172 SVLLDAGAGMSWRYKSKESGKVYRRSEGLAIASLEMFKEGLFSSNAGNKYQVDKGGLEKLTLEKLQVGLQSRPDNELAGLEGRTELLIRLSSALAANAD 270
                 *************************************************************************************************** PP

     DUF1688 199 vfgeegrpgnlvdyllskakekasskkeveleelwevlleglapiWpasrtkidgvslGDvWplsalkkskeeeeeslvpfHkLsqWltYSLleplekl 297
                 +fg++grpgn++d+lls+++++ass+ +v+l++lw+vl++gl+piWpasrt+++gvslGD+Wp++a+ +  +++++s++pfHkL+qWltYSL++p+++l
  CCE29095.1 271 YFGADGRPGNMIDHLLSHPSTQASSMLIVPLPVLWDVLMDGLGPIWPASRTALNGVSLGDAWPCQAMPNLGTASWQSILPFHKLTQWLTYSLMQPMQSL 369
                 *******************999*********************************************9999**************************** PP

     DUF1688 298 lglkvegleeltgLpeYrNGGLlvDlgvltlkkealerglkksee...........elpafeasdevivewRalTvalLDelaeevrekle..lsaeeL 383
                 l+++++g+e ltgLpeYrNGGL+vDlgvltlk ++++rglk++e+           ++p+fe+ d+vivewR+ Tv lLD l+ ev+++l+  l  +e+
  CCE29095.1 370 LNMHFAGQELLTGLPEYRNGGLFVDLGVLTLKADDMTRGLKHYEDycirhggkaveVAPMFEPGDDVIVEWRGATVGLLDMLCVEVNKALKteLAGNEM 468
                 *******************************************************99*********************************953455*** PP

     DUF1688 384 sLaqvLeagtWkaGReiAkekrpetkepPieiesDgtvF 422
                 +Laq+Leag+Wk+GReiA+ +rp+tkepPi iesDgtvF
  CCE29095.1 469 TLAQLLEAGSWKGGREIAEINRPNTKEPPILIESDGTVF 507
                 **************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3550.69
//
Query:       CCE29096.1  [L=500]
Description: related to cytochrome oxidase processing protein OXA1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-11   44.3   0.7    1.7e-11   44.3   0.7    2.1  2  60KD_IMP         60Kd inner membrane protein
     0.0085   15.0   2.0      0.013   14.4   2.0    1.2  1  Na_H_antiport_1  Na+/H+ antiporter 1
  ------ inclusion threshold ------
       0.11   11.0   0.7       0.21   10.1   0.7    1.4  1  Utp8             Utp8 family


Domain annotation for each model (and alignments):
>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.7   2.8e-15   1.7e-11       1     165 [.     193     387 ..     193     388 .. 0.77
   2 ?   -1.3   2.9       0.3   1.8e+03      25      57 ..     463     496 ..     454     500 .] 0.70

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 2.8e-15
    60KD_IMP   1 yglaIilltiivrlillpltlkqlkssakmqelqPelkeiqekyk..........kdkqklqqemmklYkkegvnplaGclplLiqlpifialyrvlrs 89 
                 +gl+     +++r++++  +++ ++ sakmqe++++ ++ ++k            +++q+ q     l  ++g++ + G++  L q+p+ ++l+r++  
  CCE29096.1 193 WGLSMAATAVLLRVLFFYPQVRAMHFSAKMQEMRKDPRAEEAKNLitesirtrdmEKRQRGQLINSLLKDEYGISSW-GIFWSLGQIPFTYGLFRIVTG 290
                 89999****************************86555444444444777774322234444444445567888877.********************* PP

    60KD_IMP  90 la..........sf.wikdLsapd....lpillavttflqqklsks.....kkm.qkmmlyvmplmilffslsfpaglvlYwlvsnllsiaqqliin 165
                 ++           f w++dL+  d    lp l +++++++ ++s++     +++  ++m yv+ ++ l+++ +f+a++ l  +   +  ++ ++++n
  CCE29096.1 291 MThipvpalenaGFlWFTDLTVADpyylLPALSTAFMIATLSISSKsvpaaQQKlLNTMKYVFGAFGLLIASFFSAAINLMAVSVGFTAVVTTYLLN 387
                 9977776665442279******99999999988888888877774423333233588899*******************998888888888888776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.3
    60KD_IMP  25 kssakmqelqPelkeiqekykkd.kqklqqemmk 57 
                  ++ k ++ + + kei +k ++  +q+  +e  k
  CCE29096.1 463 AAMTKSEQAEQKRKEIARKLESTrQQQEREEFEK 496
                 5788999999999*******76623444555554 PP

>> Na_H_antiport_1  Na+/H+ antiporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   2.0   2.2e-06     0.013     127     199 ..     323     394 ..     294     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.2e-06
                      -HHHHHHHHTTSGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHS-TT--HHHHHHHHHHHHHHHHHHHTT---H CS
  Na_H_antiport_1 127 DiAFalgvlallgkrvpaslkvfLlaLAivDDlgailviAlfYtselsllalllalvvlalllllnrlgvrsl 199
                       +AF ++ l++ +k+vpa+ + +L ++  v    + l+iA f+++ ++l+a+ ++++++++++lln+  +r+ 
       CCE29096.1 323 STAFMIATLSISSKSVPAAQQKLLNTMKYVFGAFG-LLIASFFSAAINLMAVSVGFTAVVTTYLLNHPVIRRK 394
                      58*************************99966666.579**************************99777665 PP

>> Utp8  Utp8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.7   3.5e-05      0.21     348     427 ..     422     498 ..     407     500 .] 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.5e-05
        Utp8 348 npttslevinidvGlgklkesLGKsltkseetksknlksLfdedlkesskkdesleleevlkkLkelkekkdiekfdsif 427
                 +p + l+vi+ d G  +++e L  +++  ++  s+ +++L      ++s++ e+ + +e+  kL++ +++++ e+f+++f
  CCE29096.1 422 TPDMNLNVIKSDKG--SIRERLTDNIDDMKKGASSWMTNLTGRAAMTKSEQAEQ-KRKEIARKLESTRQQQEREEFEKKF 498
                 47778888888865..69999*********************999999999988.69*********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1507  (0.0840538); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3639.79
//
Query:       CCE29097.1  [L=126]
Description: uncharacterized protein CPUR_02788 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-37  126.4   0.0    4.2e-37  126.0   0.0    1.1  1  TOM13     Outer membrane protein TOM13


Domain annotation for each model (and alignments):
>> TOM13  Outer membrane protein TOM13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   2.3e-41   4.2e-37       2      84 .]      18      96 ..      17      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 2.3e-41
       TOM13  2 ksdseeyssleeeeelesssesssssplilykpptllsllrsaainlvLPFinGlmLGfGellAhEiafrlgWsgtkvfPesR 84
                +sdse+ys     ee  s+s  ss sp+ilykpptl+sllr+aainl+LPFinG+mLGfGel+AhE+afr+gW gtkvfP++R
  CCE29097.1 18 HSDSEQYS---PGEE-LSTSAPSSGSPVILYKPPTLWSLLRGAAINLLLPFINGMMLGFGELFAHEAAFRFGWGGTKVFPTNR 96
                78999998...5566.56677777789*****************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 985.17
//
Query:       CCE29098.1  [L=435]
Description: related to potential regulatory subunit for Glc7p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-24   86.5   0.0    2.7e-24   85.5   0.0    1.5  1  SEP       SEP domain
    3.9e-11   43.0   0.0    6.5e-11   42.3   0.0    1.3  1  UBX       UBX domain
    0.00023   20.9   0.1     0.0004   20.2   0.1    1.3  1  UBA_4     UBA-like domain
  ------ inclusion threshold ------
      0.032   13.9   0.0      0.051   13.2   0.0    1.3  1  TAP_C     TAP C-terminal domain


Domain annotation for each model (and alignments):
>> SEP  SEP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.0   6.1e-28   2.7e-24       1      76 []     233     306 ..     233     306 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 6.1e-28
         SEP   1 ltlwknGFsvdDGelrsyddpenaeflesikkGevPeelekvekgeevevnledrrneeykppkkpkfkaFsGsGr 76 
                 l++w++GFs++DGelr++ddp+n++ l++i++G++P +l++ve +++v+v+l+ ++++ ykpp+k k+k+FsGsG+
  CCE29098.1 233 LHIWRDGFSIGDGELRRFDDPANQADLQMIRSGRAPLHLMDVESDQPVDVKLH-QHDTPYKPPPK-KYKPFSGSGQ 306
                 79***************************************************.66******987.79*******7 PP

>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.5e-14   6.5e-11       5      73 ..     356     424 ..     353     433 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 1.5e-14
                 SEEEEEEEETTSTEEEEEEESSSBHHHHHHHHHHHCCCCC.TSEEEEETTTTEEGGCCCCSBCCCCTTTS CS
         UBX   5 datrlqiRlpdGsrlvrrFkksdtlesvyeyVdsklfeke.epFqLltsfPrreltksdkktLsdlgllp 73 
                 +++ ++i +pdG+rl  rF+ +dt+e++y +V+   +e + +p+ L+t+fP++e +++    L d+  ++
  CCE29098.1 356 PTIMIRIQMPDGTRLPARFNTTDTIEDIYRFVRGASTETSsRPWVLATTFPNKEHSDQS-LVLADVPEFK 424
                 67889****************************9998887366************9996.8888885554 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   8.8e-08    0.0004      12      39 ..      27      54 ..      23      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8.8e-08
       UBA_4 12 GadeekArqlLeannWdLerAislyFds 39
                +a++e+A ++Lea +Wd  +A + ++ +
  CCE29098.1 27 NASPEQALHYLEAYDWDFRMACDEFLRD 54
                789*********************9976 PP

>> TAP_C  TAP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.051       3      46 ..      19      62 ..      17      63 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
                HHHHHHHH-B-HHHHHHHHSSTTT-HHHHHHHHHHHG..GGS-G CS
       TAP_C  3 vqafstqtgMnlewsqkcLeqnnWdyerAlqvFeelkakgkIPp 46
                v++f  + +  +e +  +Le  +Wd+++A+  F   + +++ Pp
  CCE29098.1 19 VHEFGVKCNASPEQALHYLEAYDWDFRMACDEFLRDTDQATAPP 62
                5555566666789999*****************99998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3176.47
//
Query:       CCE29099.1  [L=353]
Description: related to ras-related GTPase rag [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-92  306.7   0.0    1.1e-91  306.4   0.0    1.1  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    2.4e-08   33.8   0.0      4e-08   33.0   0.0    1.3  1  Ras          Ras family
      5e-08   33.2   0.0    8.7e-08   32.4   0.0    1.4  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    7.4e-08   32.5   0.0    2.1e-07   31.0   0.0    1.7  2  MMR_HSR1     50S ribosome-binding GTPase
    9.5e-08   31.7   0.0    1.4e-07   31.1   0.0    1.2  1  Arf          ADP-ribosylation factor family
     0.0016   17.6   3.1       0.72    9.0   0.5    2.8  3  G-alpha      G-protein alpha subunit
     0.0027   17.6   0.2      0.086   12.7   0.0    2.3  2  RsgA_GTPase  RsgA GTPase
     0.0032   18.0   0.1     0.0077   16.8   0.1    1.6  1  ABC_tran     ABC transporter
     0.0074   15.5   0.0      0.017   14.3   0.0    1.6  1  DUF815       Protein of unknown function (DUF815)
  ------ inclusion threshold ------
      0.015   14.7   0.0      0.028   13.9   0.0    1.4  1  SRPRB        Signal recognition particle receptor beta subuni
      0.024   14.4   0.5       0.47   10.2   0.1    2.3  2  AAA_29       P-loop containing region of AAA domain
       0.16   11.7   0.8       0.35   10.6   0.1    1.8  2  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
       0.17   11.4   0.0        0.4   10.2   0.0    1.6  2  AAA_7        P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.4   0.0   7.7e-95   1.1e-91       1     232 []      28     268 ..      28     268 .. 0.97

  Alignments for each domain:
  == domain 1  score: 306.4 bits;  conditional E-value: 7.7e-95
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletlk 99 
                 kvLLmGksg GK+smrsiiF+ny+ardt+rlgatid++ s+v+flgnltlnlwDcgGqeaf+e+yls+q+ ++f+nvgvliyVfD+esr++++dl+t+ 
  CCE29099.1  28 KVLLMGKSGCGKSSMRSIIFSNYIARDTRRLGATIDIDLSHVKFLGNLTLNLWDCGGQEAFMENYLSQQRVHVFSNVGVLIYVFDIESRDVDRDLATYM 126
                 8************************************************************************************************** PP

   Gtr1_RagA 100 eilealrqyspeakvfvlihKmDliqedereeifeerkeeireeiekleke........eiqffaTSiwdeslykAfssivqklipnldvleelLkkla 190
                 +il+al qys  ak+ +l+hKmDl+  + re+++e+r + ir++++++  +        e++ faTSiwd+slykA++si+++lipnld++e++L++l 
  CCE29099.1 127 SILSALLQYSASAKIYILVHKMDLVVPSCRENVYEDRVSLIRQRTRDFVRSvggeargiELSPFATSIWDQSLYKAWASIIHDLIPNLDIIERNLANLG 225
                 **********************************************87766788899999*************************************** PP

   Gtr1_RagA 191 eaieaeevlLferstflviatvsskeaeekdas.rfekvseii 232
                 +aieaee lLfer++fl +++++s e + ++++ r e++s+i+
  CCE29099.1 226 TAIEAEELLLFERTSFLAVSSWTSAEGRCNPTEdRLERMSNIM 268
                 ***********************99998776656*******96 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   2.9e-11     4e-08       1     118 [.      28     152 ..      28     186 .. 0.75

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 2.9e-11
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCT...TTSSEEEEEEEEEETTEEEEEEEEEETTSGGG.....HHHHHHHHTTESEEEEEEETTBHHHHHTHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeye...sTigvdfytkeievdgkevkleiwDTAGqeef.....kslrelyyrdaegillvyditsresfenvk 91 
                 K++l+G+s++GK+s+     +++  ++     +Ti  d   +++++ g +++l++wD  Gqe f     ++ r  +++++ +++ v+di+sr+  ++++
  CCE29099.1  28 KVLLMGKSGCGKSSMRSIIFSNYIARDTRrlgATI--DIDLSHVKFLG-NLTLNLWDCGGQEAFmenylSQQRVHVFSNVGVLIYVFDIESRDVDRDLA 123
                 89************987666666554433111566..55555555554.699**********99432223456678899999999********999999 PP

                 HHHHHHHHHST..TTSEEEEEEETTTGGG CS
         Ras  92 kwveeikrvae..envpivLvGnKvDlee 118
                 ++++ ++   +   + +i+++  K+Dl  
  CCE29099.1 124 TYMSILSALLQysASAKIYILVHKMDLVV 152
                 88888877777666799*********965 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   6.3e-11   8.7e-08       1     119 [.      28     149 ..      28     150 .. 0.65

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 6.3e-11
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTT.....T-HHHHCTSCEEEEEEE..GHH. CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrs.....lhplylreaalailvyd..srs. 91 
                 Kv+l+G+sg GK+s+ + + ++ + +++   +g+++   +++++k       + +++ln+WD +Gqe f +      + + +++  ++i+v+d  sr+ 
  CCE29099.1  28 KVLLMGKSGCGKSSMRSIIFSNYIARDT-RRLGATIDI-DLSHVKF------LGNLTLNLWDCGGQEAFMEnylsqQRVHVFSNVGVLIYVFDieSRDv 118
                 99************99888877776554.445555532.2333343......34689***********9754421123356688889999999643321 PP

                 HHCHHHHHHHHH...HHCSSS-EEEEEE-TT CS
         Roc  92 senlkeWlkelk...kvagkspvilvgnkiD 119
                 +++l ++++ l+   +++ ++++ +++ k+D
  CCE29099.1 119 DRDLATYMSILSallQYSASAKIYILVHKMD 149
                 3566666655551115666778888888888 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.5e-10   2.1e-07       1     102 [.      28     127 ..      28     147 .. 0.73
   2 ?   -2.0   0.0       2.7   3.7e+03      45      55 ..     334     344 ..     267     347 .. 0.73

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.5e-10
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSSHHHHHHHHHHHHHH.HHCTSEEEEEEETTTTCSHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkg.keielvDtpGliegaseekglgkafla.leeadlillvvdaseeklkpldee 96 
                 +v+++G++  GKS++ + ++ +  a+ +++ g+T+di   +vk+ g   ++l+D+ G  e a  e+ l+++      ++ ++++v+d++ +  +++d++
  CCE29099.1  28 KVLLMGKSGCGKSSMRSIIFSNyIARDTRRLGATIDIDLSHVKFLGnLTLNLWDCGG-QE-AFMENYLSQQRVHvFSNVGVLIYVFDIE-S--RDVDRD 121
                 589****************99989*******************555499********.54.4444434444443133589*******87.3..566777 PP

                 HHHHHH CS
    MMR_HSR1  97 leelle 102
                 l+ +++
  CCE29099.1 122 LATYMS 127
                 776653 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.7
                 TEEEEEEECGG CS
    MMR_HSR1  45 gkeielvDtpG 55 
                  ++++++D pG
  CCE29099.1 334 IEHFKFLDAPG 344
                 24588888888 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0     1e-10   1.4e-07       8     128 ..      20     151 ..      14     174 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1e-10
                 GTT.TTEEEEEEEESTTSSHHH....HHHHHHHSSCEECSSSSSEEEEEEEE.TTEEEEEEEE-SSGGGGGGG.....GGGCTTESEEEEEEE..TT-C CS
         Arf   8 lklkkkelrilllGLDnaGKtT....ilkklkleelvttvPTigfnveelei.knlkftvwDvGGqeklRplW.....knYfektdavifvvD..sadr 94 
                   +k k+ ++ll+G  + GK+     i  ++   ++ +   Ti  +  ++++  nl++++wD GGqe   + +      + f+++ ++i+v D  s d 
  CCE29099.1  20 EIKKPKKKKVLLMGKSGCGKSSmrsiIFSNYIARDTRRLGATIDIDLSHVKFlGNLTLNLWDCGGQEAFMENYlsqqrVHVFSNVGVLIYVFDieSRDV 118
                 44458999************863333678888999999999*********9769************986554422221578**********87335677 PP

                 TT.HHHHHHHHHHHCTSGCCTTSEEEEEEE-TTST CS
         Arf  95 eR.leeakeeLkalleeeelkevallvlaNKqDlp 128
                 +R l++  + L+all+ +  +++ +lv   K+Dl 
  CCE29099.1 119 DRdLATYMSILSALLQYSASAKIYILV--HKMDLV 151
                 77688899999****998777666555..677765 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.5   0.00052      0.72      12      39 ..      18      42 ..       9      55 .. 0.78
   2 !    7.6   0.0    0.0014       1.9     191     236 ..      66     114 ..      42     118 .. 0.81
   3 ?   -0.4   0.0      0.37   5.1e+02      58     119 ..     202     286 ..     187     314 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00052
                XXXXXXXXE..EEEEEEEESTTSSHHHH CS
     G-alpha 12 kaerkarkkkrevkllllGqseSGKsTi 39
                ++e    kk ++ k+ll+G+s++GKs++
  CCE29099.1 18 RSE---IKKPKKKKVLLMGKSGCGKSSM 42
                444...33334469************96 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0014
                 EEEEEEECT-TEEEEEEEE-SSHHHHHGTC.....CCTTTECEEEEEEEGG CS
     G-alpha 191 isetkfevdsklefrivdvgGqrserkkWv.....pffddvdaiiFlvsls 236
                  s++kf ++ +l+++++d+gGq +  ++++     ++f++v ++i++  ++
  CCE29099.1  66 LSHVKF-LG-NLTLNLWDCGGQEAFMENYLsqqrvHVFSNVGVLIYVFDIE 114
                 455555.45.899**********9999998888779**********98875 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.37
                 CCHHHHHHHHHHHHHHHHHHHHHTT...............................HHHC-SS-SCCCS-HCHHHH.......... CS
     G-alpha  58 twraviqlnivrsiktilealesleselsesf........................elqelkerldplkkveasliaklssateee 119
                 +w a i++ ++ +++ i ++l +l+  ++++                          ++ l++  + +k++++s+++++ ++ + e
  CCE29099.1 202 AW-ASIIHDLIPNLDIIERNLANLGTAIEAEElllfertsflavsswtsaegrcnpTEDRLERMSNIMKHFKQSISRFTGTPRNAE 286
                 44.34666666667777777777655554444567777777777777777777763333333333334556666555555555544 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   6.2e-05     0.086      97     121 ..      24      48 ..       7      61 .. 0.74
   2 ?    2.4   0.1     0.093   1.3e+02       8      63 ..      93     155 ..      89     177 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.2e-05
                  CTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallp 121
                   k+k ++l+G+SG GKS++   + +
   CCE29099.1  24 PKKKKVLLMGKSGCGKSSMRSIIFS 48 
                  3457899***********9776665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.093
                  ETTTT...EES--EEEEEEESTTTT--HHHHHHH..HHHH..HHTT-EEEEEEE-GGG--HHH CS
  RsgA_GTPase   8 lvrpk...vaNvdqllivvslkepelslnlldrf..Lvla..eekgiepvivlnKiDlleeee 63 
                  l++++    +Nv  l+ v+ +++ +++ +l + +  L ++   ++ +++ i++ K+Dl+  + 
   CCE29099.1  93 LSQQRvhvFSNVGVLIYVFDIESRDVDRDLATYMsiLSALlqYSASAKIYILVHKMDLVVPSC 155
                  55555555689999999999998888877766442143331145667999999****987655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   5.6e-06    0.0077       9      37 ..      24      52 ..      18     103 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.6e-06
                ETTSEEEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  9 kegekvaivGenGaGKStLlkllagllkp 37
                 + +kv ++G++G+GKS++ +++  ++  
  CCE29099.1 24 PKKKKVLLMGKSGCGKSSMRSIIFSNYIA 52
                57899****************99998865 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.2e-05     0.017      50      99 ..      23      76 ..      14      86 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
      DUF815 50 glpannvLLwGarGtGKSslvkallneyaeeg....Lrlievekedlkelpklv 99
                + + ++vLL+G+ G+GKSs+   ++++y ++      + i+++ +++k l +l+
  CCE29099.1 23 KPKKKKVLLMGKSGCGKSSMRSIIFSNYIARDtrrlGATIDIDLSHVKFLGNLT 76
                556789**************9999999887764442345888888887777765 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     2e-05     0.028       2     126 ..      25     152 ..      24     177 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2e-05
                 ---EEEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG......GGTT-SEEEETT-GCCSHHHH.HHHHHH.GGEEEEEEEEETTS-HHHH.HH CS
       SRPRB   2 skpavllvGlsdsGKTslftrLttdsvkktvtSqessaalkv...ksekgskltliDfPGheklrqkll.eklkak.sslkglvfvvDStidpkev.ke 94 
                 +k++vll+G s +GK s+   + ++ + +    + +++  ++   k   + +l+l D  G+e +  + l ++ ++  s++  l++v D  i++++v ++
  CCE29099.1  25 KKKKVLLMGKSGCGKSSMRSIIFSNYIARDTRRLGATIDIDLshvKFLGNLTLNLWDCGGQEAFMENYLsQQRVHVfSNVGVLIYVFD--IESRDVdRD 121
                 5789***********99877766664433333333333333311133678999**********988765144444326699******9..899999345 PP

                 HHHHHHHHHHHHHHHTT---EEEEEE-TTSTT CS
       SRPRB  95 vAEllyeilliteklkdavdiliACnKqelfl 126
                  A + ++il+   +   + +i i  +K +l++
  CCE29099.1 122 LATY-MSILSALLQYSASAKIYILVHKMDLVV 152
                 5655.68999999999999999999**99987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00034      0.47      22      38 ..      26      42 ..      15      43 .. 0.79
   2 ?    1.8   0.0      0.15     2e+02      43      57 ..     312     326 ..     307     328 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
      AAA_29 22 kgatlltGpsGsGKSTl 38
                k  +ll+G+sG GKS++
  CCE29099.1 26 KKKVLLMGKSGCGKSSM 42
                3369***********86 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.15
      AAA_29  43 qalLvpakkvrfNka 57 
                  ++ +p+ ++rfN+a
  CCE29099.1 312 LMVVLPPGEARFNAA 326
                 567788888****98 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00025      0.35       2      19 ..      27      44 ..      26      55 .. 0.86
   2 ?   -2.0   0.1       1.9   2.7e+03      53      73 ..     128     148 ..     123     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
   PduV-EutP  2 kkilliGkvgsGKttLtq 19
                kk+ll+Gk+g+GK ++  
  CCE29099.1 27 KKVLLMGKSGCGKSSMRS 44
                9************99865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.9
   PduV-EutP  53 lysalivtsaeadvialvqda 73 
                 + sal  +sa+a++  lv+++
  CCE29099.1 128 ILSALLQYSASAKIYILVHKM 148
                 568999999999999999876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00029       0.4      32      52 ..      25      45 ..      19      64 .. 0.84
   2 ?   -3.8   0.0       5.6   7.8e+03     153     176 ..     245     268 ..     241     270 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00029
       AAA_7 32 nkkpvllvGptGtGKtviikd 52
                +kk+vll+G++G+GK+++ + 
  CCE29099.1 25 KKKKVLLMGKSGCGKSSMRSI 45
                689*************98765 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.6
       AAA_7 153 aamgppgggrneitpRllrhfnvl 176
                 ++ +  +g  n+ + Rl r+ n++
  CCE29099.1 245 SSWTSAEGRCNPTEDRLERMSNIM 268
                 555667777899999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2321.46
//
Query:       CCE29100.1  [L=237]
Description: related to carboxylic acid transport protein JEN1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-09   34.6   8.0    1.5e-07   30.7   9.3    1.8  1  Sugar_tr  Sugar (and other) transporter
    1.5e-06   27.4  11.6    2.7e-06   26.6  11.7    1.3  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   9.3   1.6e-11   1.5e-07      43     192 ..      32     195 ..       7     197 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.6e-11
                 H...........HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-S CS
    Sugar_tr  43 e........ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApk 133
                 +         +   +    ++ +Ga +G+ ++g+l+++fGR+ ++++aa+++ i +   ++ +      +l +  +++ ++v +a +++P+ ++E++p+
  CCE29100.1  32 TfmltqkelNNDGASRASILMKAGACVGGTIIGYLSQFFGRRRTIICAALMSGIMIPAWILPQ---GEHALSATGFFMQFFVQGAWGVIPIHLNELSPA 127
                 23333333322233455667889*****************************99888888888...4477777889999******************** PP

                 CCHHHH.HHHHHHHHHHHHHHHHHHHHHH.HTSS-......TTHHHHHHHC.CHHHHHHHHHHGGGS- CS
    Sugar_tr 134 klRgal.vslyqlaitfGilvaaifglgl.nktsn......adgwrillgl.qlvpallllilllflP 192
                 + R+++ ++ yql+  +    a+i++++  +++        ++ +   +g+ ++++al +++  +f P
  CCE29100.1 128 AFRSTFpGVTYQLGNMISSPSAQIVNAIAeSTFVRlpnghvREAYGPVMGVaTAIIALGIVFTTMFGP 195
                 ***6654999*****************99666655887766555544444413444444444445555 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6  11.7     3e-10   2.7e-06      29     179 ..      40     200 ..       8     221 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3e-10
       MFS_1  29 ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigl 125
                 ++ + ++ +  l  +ga+v+  ++G+ls+ fGrrr++++++l+++++  +++++ ++   +l +  +++ ++  +++ ++ + + +++p    ++   +
  CCE29100.1  40 LNNDGASRASILMKAGACVGGTIIGYLSQFFGRRRTIICAALMSGIM--IPAWIlPQGEhALSATGFFMQFFVQGAWGVIPIHLNELSPA---AFRSTF 133
                 33444555666667799******************************..555433444447*****************************...999999 PP

       MFS_1 126 lsagfslGailgpllggllasslg..............Wravfyilaivsllafvlfllllpeepper 179
                  +++++lG ++  + + ++ + +               +  v+ +++++ +l++v+    +  e++ r
  CCE29100.1 134 PGVTYQLGNMISSPSAQIVNAIAEstfvrlpnghvreaYGPVMGVATAIIALGIVF-TTMFGPERRGR 200
                 9****************999888899999999999887666666666666666664.44444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1750.53
//
Query:       CCE29101.1  [L=233]
Description: related to carboxylic acid transport protein JEN1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-16   60.9  10.4    1.2e-16   60.6  10.4    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.4e-15   57.1  16.6    1.8e-15   56.8  16.6    1.1  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6  10.4   1.4e-20   1.2e-16      13     176 ..      67     229 ..      58     233 .] 0.92

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.4e-20
                 HHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.......HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGG CS
    Sugar_tr  13 gYdtgvigafltllkfaknfglsksksskee....ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevliv 107
                 ++ ++++g+ ++  +++ ++ ls ++++ ++    s+++++    ++l+ + +G+  +gl+gd++GRk+ +++  +++   ++ ++ +    ++ ++++
  CCE29101.1  67 NWLFFTVGFLSWTADAFDFHALSIQTKKLATyygrSKTDITSAITLTLLLRSLGAAAFGLAGDKWGRKWPMVANMLILGLLQIATIYCS---TFSQFLA 162
                 67788999999999999999999999999989999999999999999**************************9999999999999888...8****** PP

                 GHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHC CS
    Sugar_tr 108 gRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillgl 176
                  R l G+++G++++ +   + E +p + Rg + ++ q +++fG ++aa+ +lg+   ++  +w+  ++ 
  CCE29101.1 163 VRSLFGLFMGGVYGNAIAMALEQCPSNARGLMSGILQQGYSFGYVLAACANLGVGGGTE--TWKTVFWA 229
                 ******************************************************87777..79999886 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8  16.6     2e-19   1.8e-15       8     158 ..      77     231 ..      67     233 .] 0.87

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 2e-19
       MFS_1   8 salarsi..lgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgagal 102
                 s +a ++   ++++    la+ +g s++ i  ++tl  l+ ++++  +G  +d++Gr++ +++ +l+++l   +++ ++s++  +l++r l Gl++g++
  CCE29101.1  77 SWTADAFdfHALSIQTkKLATYYGRSKTDITSAITLTLLLRSLGAAAFGLAGDKWGRKWPMVANMLILGLL-QIATiYCSTFSQFLAVRSLFGLFMGGV 174
                 4444444555555566689999*************************************************.55553779999**************** PP

       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyila 158
                 + +++a++ +  p + rg++ g+l+ g+s+G++l++ +   +   +g   W  vf++++
  CCE29101.1 175 YGNAIAMALEQCPSNARGLMSGILQQGYSFGYVLAACANLGVG--GGtetWKTVFWAAG 231
                 ***********************************99998888..22557******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1771.64
//
Query:       CCE29102.1  [L=539]
Description: related to ceramide glucosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-12   46.1   0.0    7.5e-06   25.5   0.0    3.3  3  Glyco_transf_21  Glycosyl transferase family 21
    2.4e-08   34.2   0.0    4.3e-08   33.3   0.0    1.5  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    0.00049   20.0   0.1     0.0039   17.0   0.1    2.2  1  Glycos_transf_2  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.3e-09   7.5e-06      12      56 ..     132     176 ..     127     203 .. 0.90
   2 !   10.2   0.0   6.3e-05      0.38      77     116 ..     246     288 ..     241     290 .. 0.81
   3 !    6.3   0.0   0.00098       5.9     118     173 .]     306     364 ..     302     364 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.3e-09
  Glyco_transf_21  12 pvgvnpKvnnllqaleaakydllvisDsdvrvkpdyLeellaale 56 
                      + g npK+ n+++a+++a  d+++i D++v v++  L +++ +l+
       CCE29102.1 132 NLGPNPKIRNISRAYREASGDIIWIIDCNVWVAKGVLGRMVDKLM 176
                      5789*************************************9987 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 6.3e-05
  Glyco_transf_21  77 aaleaafl.ntlagvlqa..klsglgfavGksmalrreaLeai 116
                      ++l   f+ + + +++ a  +++ + ++vGks ++r++ L+++
       CCE29102.1 246 GRLDEMFFaTSHVKFYGAinSVGVAPCIVGKSNMFRKAHLDQV 288
                      5666666657788888887668999****************97 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.00098
  Glyco_transf_21 118 GfealadeLAeDyalgkllraaGlkvvlspapiaqtsvpr...rsslrallaRqlrWar 173
                      G+  ++ +++eD+ +g ll +  +  +l + ++    v +   + s+++++aR +rW r
       CCE29102.1 306 GVDFFSFNICEDHLIGDLLWRSDIPGYLNHGMVWGDVVIQpliNMSIASYAARRCRWLR 364
                      67778889********************999755433433567789999********75 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   7.3e-12   4.3e-08       9     177 ..      58     302 ..      51     365 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 7.3e-12
  Glyco_tranf_2_3   9 ptfneedvlgevlesllaqey..prvevvvvvdesdaetlevaeelaaalpdvrvrvvvn............arnlgstgksralnealravks 88 
                      p+ + e++l e+++s+  q y  + + + ++ + +++ + +v+++l++++pd +v++++              +nlg++ k+r++++a+r +++
       CCE29102.1  58 PVKGLEPRLYECIASTFQQNYstDKLSIRLCIEDETDPAYPVLQQLVRDFPDFDVQILIEtsdpilhgtsghVENLGPNPKIRNISRAYREASG 151
                      5556678899**********954448888999***************************9888888888777699******************* PP

  Glyco_tranf_2_3  89 dlvllvDdDtvvePdtlkrllqff........ltpkvgavgtpvfl.....lnrstl....................................v 133
                      d+++++D  + v +++l r++  +        +++ +++v ++ ++     +nrs +                                     
       CCE29102.1 152 DIIWIIDCNVWVAKGVLGRMVDKLmgfapagqAAKPYKFVHQMPLVvdmaaYNRSGTeetqalsssidadpeavpglaedmdndlfgkilrqgG 245
                      *****************9999988874444444448899988888766555556655888999999***********************99998 PP

  Glyco_tranf_2_3 134 salgalefaerhlrflaarralgv.ltlnGsgslirrevlkele............g 177
                       +l+ ++fa  h +f  a +++gv +++ G   ++r + l++               
       CCE29102.1 246 GRLDEMFFATSHVKFYGAINSVGVaPCIVGKSNMFRKAHLDQVTtpsrnpllpktdN 302
                      8899*******************846666*999999999999984444444444440 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   6.5e-07    0.0039      66     104 ..     137     175 ..      54     190 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.5e-07
                      HHHHHHHHHHHH--SSEEEEEESSEEE-TTHHHHHHHHH CS
  Glycos_transf_2  66 GkagalnaglraatgdyilflDaDdepdpdwleklveal 104
                       k++++ ++ r+a+gd+i+++D  ++++++ l ++v++l
       CCE29102.1 137 PKIRNISRAYREASGDIIWIIDCNVWVAKGVLGRMVDKL 175
                      5899********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:01.42
# Mc/sec: 1146.59
//
Query:       CCE29103.1  [L=846]
Description: related to tRNA-splicing endonuclease beta chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-16   60.3   0.0    2.8e-16   59.4   0.0    1.4  1  tRNA_int_endo    tRNA intron endonuclease, catalytic C-termin
     0.0015   18.2   0.0       0.37   10.5   0.0    2.4  2  tRNA_int_endo_N  tRNA intron endonuclease, N-terminal domain


Domain annotation for each model (and alignments):
>> tRNA_int_endo  tRNA intron endonuclease, catalytic C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   3.1e-20   2.8e-16       1      79 [.     719     809 ..     719     812 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 3.1e-20
                    HHHHHHHHHHHHHTT-EEEECGGGTSSEEEETSCTTTSSCSEEEEEEETTSEE............EHHHHHHHHHHHHHTTSEEEEEEETT CS
  tRNA_int_endo   1 falkyavyrdLrekGyvvrsGlkFGadFrvYqrrpslehseylVvvvsedeel............dwpdlsaavrlahsvkKklilaivda 79 
                    f+ +yavy+++r+ G+v+r G+kFG d ++Y r+p ++h+e+ + vv++ +              +w+ l + vr+   v K lil++vd 
     CCE29103.1 719 FLVQYAVYHHYRSLGWVPRAGIKFGVDWLLYARGPVFDHAEFGLIVVPSYSDAwwkaqgtqappkTWHWLHGVVRVLSHVIKSLILVYVDV 809
                    7889********************************************999999***********************************85 PP

>> tRNA_int_endo_N  tRNA intron endonuclease, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0     0.002        18       9      29 ..     106     126 ..     101     140 .. 0.87
   2 !   10.5   0.0   4.1e-05      0.37      33      65 ..     656     691 ..     652     693 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.002
                      EEEESSHHHHHHHHHTTT-SE CS
  tRNA_int_endo_N   9 rvlvedeeaakrlyekgfYGk 29 
                      +v++ d +  + l e+gfYGk
       CCE29103.1 106 SVHITDGQSMRALWEQGFYGK 126
                      7999*9999***********9 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 4.1e-05
                      TSSEEEEHHHHHHHHHT.TSEEEE..TTSEEE-HHH CS
  tRNA_int_endo_N  33 depLqLslvEAlYLlek.Gklevv..kggeplsfee 65 
                       e LqL+++EA +L    G l+v+   +g++ls ++
       CCE29103.1 656 REHLQLTPEEAYFLSFGlGALSVTdpSTGRVLSNKD 691
                      689*************99*****9877777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5672.04
//
Query:       CCE29104.1  [L=582]
Description: related to gamma-butyrobetaine,2-oxoglutarate dioxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-30  106.4   0.1      5e-30  105.2   0.1    1.6  1  TauD         Taurine catabolism dioxygenase TauD, TfdA family
    1.5e-06   28.8   0.0    3.2e-06   27.7   0.0    1.6  1  DUF971       Protein of unknown function (DUF971)
  ------ inclusion threshold ------
        1.8    7.5  10.0        2.8    6.9  10.0    1.2  1  FAM199X      Protein family FAM199X
        9.4    4.5  10.9         16    3.7  10.9    1.4  1  Herpes_pp85  Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV U


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.1   1.1e-33     5e-30      64     268 .]     313     523 ..     290     523 .. 0.85

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 1.1e-33
        TauD  64 gtpgrgtntkygevldvssvyesadianlayttll..wHtDlsylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpell.......egltav 153
                 ++    ++t+yg+++dv +++  ++ a+   t+ +  +H Dl+yl  pp iq+Lhc  ++ +GGe++f+Dg ++ + L++  ++          g  a+
  CCE29104.1 313 NHLANLRETFYGRTFDVRAKPHAENVAY---TSGYlgLHQDLCYLAPPPMIQVLHCMDNSCEGGESLFSDGERVGRLLWPFVRRGTgtggsnkMGVLAE 408
                 56667899********998554444444...5555447**********************************************998866655444444 PP

        TauD 154 rvyyhyrggglrteqelpavdkhprtghpvvrthpvltgrkallvnppfatri.......eglgtpeskelldaleelledpeftyrfqwqeGdlvifd 245
                 ++   +           ++   ++r+++ v r+++       ++ +ppf+ r+       e+++ ++   + + +e l++dp  ++r ++qeG++v+fd
  CCE29104.1 409 HAVPYQ----------YDKHGYYYRAERSVLRREEADGSFGGVYWSPPFQGRYeqqeyggEEVDLKRWIPAARVFEGLVNDPGAVFRYKMQEGECVLFD 497
                 444444..........44899**************88999999999*******999988888888********************************** PP

        TauD 246 NrrvlHgrtaf...degeeRhllrcy 268
                 N+rvlHgr af     g +R+l++ y
  CCE29104.1 498 NLRVLHGRNAFdaaHRGGSRWLRGGY 523
                 ***********433244568**9976 PP

>> DUF971  Protein of unknown function (DUF971)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   7.1e-10   3.2e-06      11      73 ..      70     147 ..      64     164 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 7.1e-10
      DUF971  11 eiewddgke..............sslpaelLRdacpcaecrkp..gqrllqsgkipkdvkiesiepvgnyalrlvfsDg 73 
                 +i+w+ ++                +l+a++LRd+c c +cr++  g++++ s +ip++++i+ ++ + + +l ++f ++
  CCE29104.1  70 TISWTHEHIllqhqdhqnstlppRRLHAATLRDECSCPTCRDEssGNKTFASVEIPPEIRIVGVR-AREDGLGIQFAND 147
                 55554444444444444477777899***************44469999***************9.7789999999765 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  10.0   0.00064       2.8     193     255 ..     157     220 ..     136     245 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00064
     FAM199X 193 asstreswkrssyssastsgvs.aasssnasmvssassstasvgssaansaanisrahsdsnls 255
                 + +  e   r ++s+as   vs +asss++s  ss ss+++sv++s ++s++    a s s+ +
  CCE29104.1 157 TVVPWERVERVVFSAASYWPVSeSASSSSSSSFSSYSSASSSVSASHSASSSASPFASSTSAAA 220
                 4445556667788889988888335666677778888888888777666666555555555544 PP

>> Herpes_pp85  Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  10.9    0.0037        16     467     522 ..     165     218 ..     130     225 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0037
  Herpes_pp85 467 grdlfadvfrrpvtdaaasssassssssasPnsvslpsdrssstrtrvPassyssa 522
                  +r +f+     pv ++a+sss sss ss+s  s s+ +  s+s     P  s +sa
   CCE29104.1 165 ERVVFSAASYWPVSESASSSS-SSSFSSYSSASSSVSASHSASS-SASPFASSTSA 218
                  567888888899999987766.5667778888856655555554.55676666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 4138.94
//
Query:       CCE29105.1  [L=466]
Description: related to SGT1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-28   98.9   1.5    1.3e-28   98.9   1.5    2.2  2  SGS       SGS domain
    3.8e-09   37.4   0.0      1e-08   36.1   0.0    1.7  2  CS        CS domain
    1.2e-05   25.1  10.5      0.052   13.7   0.3    4.2  4  TPR_2     Tetratricopeptide repeat
    2.6e-05   23.8   5.5     0.0056   16.4   0.2    3.6  3  TPR_1     Tetratricopeptide repeat
     0.0013   18.4   1.2        0.8    9.4   0.0    3.4  3  TPR_11    TPR repeat
      0.008   16.7   0.3      0.008   16.7   0.3    2.8  3  TPR_19    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.9   0.5        5.5    7.5   0.1    3.1  2  TPR_8     Tetratricopeptide repeat
      0.018   15.7   4.9      0.018   15.7   4.9    3.8  4  TPR_16    Tetratricopeptide repeat
      0.066   13.4   0.7       0.29   11.4   0.1    2.2  2  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
        2.2    9.1   5.4        2.3    9.1   0.1    3.6  3  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SGS  SGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.4       3.6   6.4e+03       3      22 ..     313     331 ..     312     358 .. 0.53
   2 !   98.9   1.5   7.2e-32   1.3e-28       1      83 []     391     466 .]     391     466 .] 0.94

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.6
         SGS   3 Wdklekelekeekeekkeee 22 
                 W +l+k+++ ++ +e+++ +
  CCE29105.1 313 WARLSKQDSVNDGAEEEK-Q 331
                 666666665332222222.1 PP

  == domain 2  score: 98.9 bits;  conditional E-value: 7.2e-32
         SGS   1 kdWdklekelekeekeekkeeegeaalnklFkklYadadedtrrammKSyveSnGtvLstnWeevkkkkvetkpPegmeakkw 83 
                 kdWd++++e+e       +ee  ++ ++++Fkk+Y d+++d++rammKS++eSnGt+Lst+W++v +++v ++pP+g+eakkw
  CCE29105.1 391 KDWDRIAAEEE-------PEEVYDNGVDTFFKKIYGDGNDDQKRAMMKSFTESNGTTLSTDWKDVANRTVGVSPPSGVEAKKW 466
                 79****99988.......33457899********************************************************9 PP

>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0        10   1.8e+04      27      34 ..     189     196 ..     183     205 .. 0.54
   2 !   36.1   0.0   5.7e-12     1e-08       6      76 .]     235     307 ..     234     307 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 10
                 CEEEEEET CS
          CS  27 dvkvefke 34 
                 +v+v+ k+
  CCE29105.1 189 KVTVSVKP 196
                 34444333 PP

  == domain 2  score: 36.1 bits;  conditional E-value: 5.7e-12
                 EEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEETSCEEEEECE.......BSS-BETTTEEEEEETTEEEEEEEB CS
          CS   6 yQtldeVvvtiyvkkvnikkkdvkvefkerslkvkigkeklliege.......LfgpIdpeesswtieskkveitLkK 76 
                 yQt+d V+v+i+ k+v  ++  ++vef +++++v+     ++ +ge       L+++Idp+ ss+++ + kve+ L K
  CCE29105.1 235 YQTNDAVTVSIFSKGV--NEAVLDVEFLPDRVRVNP---LVYPDGEqkewtleLYSQIDPSASSYRVSPVKVELRLAK 307
                 9**************9..*****************7...67778888899999***********************98 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.018        32       7      28 ..       9      30 ..       5      31 .. 0.88
   2 !   10.8   0.3   0.00024      0.42       2      25 ..      37      60 ..      36      65 .. 0.88
   3 !   13.7   0.3   2.9e-05     0.052       2      18 ..      77      93 ..      76      94 .. 0.94
   4 ?   -2.7   0.0       5.3   9.5e+03      14      26 ..     364     376 ..     363     377 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.018
       TPR_2  7 lGlayyklgdyeeAleafekAl 28
                +Gl ++   ++e+Al+a+ kAl
  CCE29105.1  9 QGLKALDERKWEDALNALSKAL 30
                677788999************9 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00024
       TPR_2  2 ealynlGlayyklgdyeeAleafe 25
                 +l ++ +a++ l++yeeAle+ +
  CCE29105.1 37 AWLLARSRALISLQRYEEALEDAN 60
                68999***************9876 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 2.9e-05
       TPR_2  2 ealynlGlayyklgdye 18
                ea+y++G ay+++g+y+
  CCE29105.1 77 EAHYRRGVAYFRMGQYA 93
                89**************7 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 5.3
       TPR_2  14 lgdyeeAleafek 26 
                  g++++A++a +k
  CCE29105.1 364 TGKPAKAAAAVKK 376
                 5899999998776 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.051        92      11      28 ..      13      30 ..       7      31 .. 0.84
   2 ?    5.1   0.1     0.012        22      10      24 ..      45      59 ..      44      63 .. 0.83
   3 !   16.4   0.2   3.1e-06    0.0056       2      18 ..      77      93 ..      76      94 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.051
                HHHTT-HHHHHHHHHHHH CS
       TPR_1 11 yfklgkydeAleyyekAL 28
                 +   k+++Al + +kAL
  CCE29105.1 13 ALDERKWEDALNALSKAL 30
                567789***********9 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.012
                HHHHTT-HHHHHHHH CS
       TPR_1 10 ayfklgkydeAleyy 24
                a+ +l++y+eAle+ 
  CCE29105.1 45 ALISLQRYEEALEDA 59
                56789********95 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 3.1e-06
                HHHHHHHHHHHHTT-HH CS
       TPR_1  2 kalynlGnayfklgkyd 18
                +a+y++G+ayf++g+y 
  CCE29105.1 77 EAHYRRGVAYFRMGQYA 93
                8***************6 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.059   1.1e+02       9      21 ..      18      30 ..      14      31 .. 0.93
   2 ?    3.1   0.1     0.042        75       3      15 ..      45      57 ..      44      58 .. 0.84
   3 !    9.4   0.0   0.00045       0.8      29      42 .]      77      90 ..      75      90 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.059
      TPR_11  9 kyeeAieaYkkAl 21
                k+e+A++a++kAl
  CCE29105.1 18 KWEDALNALSKAL 30
                89**********8 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.042
      TPR_11  3 ayyeqGkyeeAie 15
                a+ ++++yeeA+e
  CCE29105.1 45 ALISLQRYEEALE 57
                788999*****98 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00045
      TPR_11 29 eayynLGlayykqG 42
                ea+y +G+ay+++G
  CCE29105.1 77 EAHYRRGVAYFRMG 90
                8***********99 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3   4.5e-06     0.008       1      46 [.      13      57 ..      13      57 .. 0.90
   2 ?    0.4   0.1      0.54   9.8e+02      14      42 ..      63      93 ..      56      94 .. 0.65
   3 ?   -3.5   0.6       8.6   1.5e+04      47      66 ..     335     354 ..     333     355 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.5e-06
      TPR_19  1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46
                +l+e + ++Al++l++al  +  n++ +l+  +al++l +++eA +
  CCE29105.1 13 ALDERKWEDALNALSKALLGST-NPAWLLARSRALISLQRYEEALE 57
                6899*************88866.8888888**************75 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.54
      TPR_19 14 leqalqedpkna..earllLAeallalgqld 42
                + +a++ +  ++  ea ++   a++ +gq++
  CCE29105.1 63 FHAAYDRNKRDLliEAHYRRGVAYFRMGQYA 93
                5566666666541155667799******995 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 8.6
      TPR_19  47 lLdalpeedpddaryasLlA 66 
                 +L+a+ + + d+a++a ++A
  CCE29105.1 335 ALKAARKRAIDSADAAEAKA 354
                 56666666666666666665 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.015        27       6      26 ..      41      61 ..      39      64 .. 0.83
   2 ?    7.5   0.1     0.003       5.5       2      19 ..      77      94 ..      76      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.015
                HHHHHHHHTT-HHHHHHHHHH CS
       TPR_8  6 nlgsiylklgdyeeAkeyyek 26
                  ++++++l++yeeA e  + 
  CCE29105.1 41 ARSRALISLQRYEEALEDANL 61
                56899**********998765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.003
                CHHHHHHHHHHHTT-HHH CS
       TPR_8  2 eayynlgsiylklgdyee 19
                ea+y+ g +y+ +g+y +
  CCE29105.1 77 EAHYRRGVAYFRMGQYAN 94
                89**************86 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   4.9     1e-05     0.018       3      59 ..       9      62 ..       7      68 .. 0.89
   2 ?    9.7   1.3   0.00077       1.4      14      51 ..      57      93 ..      56      95 .. 0.92
   3 ?   -1.9   2.1       3.1   5.5e+03      18      36 ..     334     352 ..     333     356 .. 0.72
   4 ?   -2.2   0.1         4   7.2e+03      48      59 ..     365     376 ..     363     383 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1e-05
      TPR_16  3 laraalragdyddAaaal.eaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyra 59
                +++ al+ ++++dA++al +a+l +      ++++ll++ +a+  ++r++eA+ ++ +a
  CCE29105.1  9 QGLKALDERKWEDALNALsKALLGST-----NPAWLLARSRALISLQRYEEALeDANLA 62
                78889*********************.....**********************776655 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00077
      TPR_16 14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqgrla 51
                +dA  a++aa +r++++    eA++ +g+a++r g +a
  CCE29105.1 57 EDANLAFHAAYDRNKRDL-LIEAHYRRGVAYFRMGQYA 93
                79999**********998.8*************99987 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.1
      TPR_16  18 aaleaalkrdpssPdaaeA 36 
                 +al+aa+kr+ +s daaeA
  CCE29105.1 334 EALKAARKRAIDSADAAEA 352
                 6788888888777777776 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 4
      TPR_16  48 grlaeAaalyra 59 
                 g  a+Aaa++++
  CCE29105.1 365 GKPAKAAAAVKK 376
                 556666666655 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00016      0.29      35      76 ..      15      56 ..       9      58 .. 0.80
   2 ?   -0.9   0.1       1.1   1.9e+03      29      39 ..      82      92 ..      59      95 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
                HTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3 35 lngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAi 76
                   +++ A++ l+ka l s++++ ++   ++l+ L++yeeA+
  CCE29105.1 15 DERKWEDALNALSKALLGSTNPAWLLARSRALISLQRYEEAL 56
                6789***********66666665555555************8 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.1
                HHHHHHHTT-H CS
      ANAPC3 29 lAlclylngqy 39
                 + +++++gqy
  CCE29105.1 82 RGVAYFRMGQY 92
                35677777777 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       3.3     6e+03      12      26 ..      16      29 ..       7      30 .. 0.76
   2 ?   -0.3   0.2       1.2   2.1e+03       4      21 ..      40      57 ..      37      61 .. 0.73
   3 ?    9.1   0.1    0.0013       2.3       1      17 [.      77      93 ..      77      96 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.3
                HHHHHHHHHHHHHHH CS
       TPR_6 12 klgdtdkAlealerl 26
                +  ++++Al al + 
  CCE29105.1 16 ER-KWEDALNALSKA 29
                44.899999999875 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.2
                HHHHHHHHHHHHHHHHHH CS
       TPR_6  4 yklalsyrklgdtdkAle 21
                + + +++++l+++++Ale
  CCE29105.1 40 LARSRALISLQRYEEALE 57
                555677777679999987 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0013
                HHHHHHHHHHHHHHHHH CS
       TPR_6  1 dAlyklalsyrklgdtd 17
                +A y+++ +y+++g+++
  CCE29105.1 77 EAHYRRGVAYFRMGQYA 93
                79***********9*97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1016  (0.056668); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3285.62
//
Query:       CCE29106.1  [L=744]
Description: related to lanosterol synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-45  153.8   0.0    6.2e-42  143.8   0.1    2.2  2  SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
      6e-42  143.7   5.4    3.1e-37  128.2   0.9    3.4  4  SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
    5.8e-27   93.1   3.1    4.1e-09   36.0   0.1    5.1  4  Prenyltrans      Prenyltransferase and squalene oxidase repea
  ------ inclusion threshold ------
      0.096   12.0   0.1        1.7    7.9   0.0    2.7  3  Pec_lyase        Pectic acid lyase


Domain annotation for each model (and alignments):
>> SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00037       1.7     160     230 ..      91     161 ..      79     192 .. 0.83
   2 !  143.8   0.1   1.4e-45   6.2e-42       4     317 ..     404     734 ..     402     736 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00037
                      HHHHHHHHHHHHS-TTS----SSBSSHHHHHHHHHHHHHHTT--TTSHHHHHHHHHHHTT--.TTSSBB--G CS
  SQHop_cyclase_C 160 alkraveylkkeqepdGsWfGrWGvnyiyGtwsvlsalaavgedleepvirkavdWlksvqn.edGGWGesa 230
                      a+ +a+++++k q+p+G W   +G    +    ++ + ++ +++  +++     d+l+++ + edGGWG ++
       CCE29106.1  91 AAGNALHFFEKLQQPSGHWACEYGGPM-FLLAGIVASWHVTKTPIPSAYATAIKDYLTARADpEDGGWGLHT 161
                      667899***************999654.444556677788888888999998999999876538*****765 PP

  == domain 2  score: 143.8 bits;  conditional E-value: 1.4e-45
                      HHHHHHHHHHHHHHT--TT...-HHHHHHHHHHHTT-B-S.--GGGGT-TTS---BB-SSSS-TT--BHH...HHHHHHHHHTT---STHHHHH CS
  SQHop_cyclase_C   4 vWdtalavlalleagveae...eealkkaleWllekqvlv.kGdWkvkrpevepgGwafefaneyyPdvd...dtavvvlalkrvrlkeekkke 90 
                       Wdta+ ++ +   g +++   ++ l +ale+l ++q+++   d ++  ++ + gGw f  +++ y   d   ++   ++ l++v    e  ++
       CCE29106.1 404 CWDTAFLIQGVFAGGLQNDekwRPMLIRALEYLERQQIREnCVDQEMCYRQPRKGGWPFSNRDQGYGVSDcisEALKAIILLQKVGGFPEVLQD 497
                      6********9999887655122689**************6257999999999**************754411134445667777777788899* PP

                      HHHHHHHHHHHHTB-TTSSB-SSSSSB--SGGGGSTT-SS..S-SSB--BHHHHHHHHHHHHHHT-.......-TTSHHHHHHHHHHHHHS-TT CS
  SQHop_cyclase_C  91 eaiaraveWilglqsknGGwaafdkdntkellnkiPfadh..ealldpptadvtarvlellaqlge.......eedsealkraveylkkeqepd 175
                      ++i  av+ +l  q+ nG  +++++  + e+ + +  a+     ++++   + t+ ++ +l+ +++       +e s  +kra +++k++q+ d
       CCE29106.1 498 QRIFDAVDTLLIYQNDNGACSSYEARRAGEYTELLNAAEVfsRIMIEYDYPECTTACVTALSLFQKywpqyraKEISLFIKRATNWIKSNQRID 591
                      ***************************999999999998533679999999999999999987765332111134455689************* PP

                      S----SSBSSHHHHHHHHHHHHHHTT--.TTSHHHHHHHHHHHTT--TTSSBB--GGGGT-GGGTT-.SSBBHHHHHHHHHHHHHTTGGGSHHH CS
  SQHop_cyclase_C 176 GsWfGrWGvnyiyGtwsvlsalaavged.leepvirkavdWlksvqnedGGWGesaesykdpklagk.gestasqtaWallallaageveseav 267
                      GsW+G WG+ + y t+ +l ++a+++e   ++++ +++ d+l s+q++dGGW es +  +  ++ ++   s   qt+Wal++l+ a   + e +
       CCE29106.1 592 GSWYGSWGICFTYATMFALESMASIKETyGNSKISKRGCDFLISKQRADGGWSESYKGCETMEYHEHpMGSLVVQTSWALIGLIEADYPDIEPL 685
                      **************************983566677899********************999999998567899********************* PP

                      HHHHHHHHHH--TTS-----S--EEEETTTEEEEETTHHHHHHHHHHHHH CS
  SQHop_cyclase_C 268 krGiaylletqkedGtWeeeaytgtGfPrvfylkyhlyrkvfPllalary 317
                      k+Gi+ ++e+q+e+G+W +ea+ g  f +  ++ y +y+ +fP+ al+ +
       CCE29106.1 686 KKGIKLIMERQQENGEWLQEAIEGV-FNKSCMISYPNYKFTFPIKALGLF 734
                      ********************99985.*********************865 PP

>> SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.2   0.9     7e-41   3.1e-37       7     287 ..      98     388 ..      92     392 .. 0.75
   2 ?   -1.3   0.0      0.21   9.3e+02      38      71 ..     435     467 ..     412     481 .. 0.72
   3 !   15.3   0.0   1.7e-06    0.0078       1      70 [.     577     649 ..     577     655 .. 0.75
   4 ?   -1.3   0.0      0.21   9.4e+02      48      64 ..     686     702 ..     677     716 .. 0.71

  Alignments for each domain:
  == domain 1  score: 128.2 bits;  conditional E-value: 7e-41
  SQHop_cyclase_N   7 allslqkpdGhWvgeLeanvtitaeyillrefl.geddeeeeekiakylrsqqr.edGgWelypggpgdlsttveaYlALkllGdspdapalar 98 
                      ++ +lq+p GhW  e    + + a  +   ++   ++ ++ +++i+ yl+++   edGgW+l+++g++ ++     Y+ L+l+G++p++p +++
       CCE29106.1  98 FFEKLQQPSGHWACEYGGPMFLLAGIVASWHVTkTPIPSAYATAIKDYLTARADpEDGGWGLHTEGESTVFGITLNYMVLRLVGVDPETPLMVK 191
                      56689****************************8999999***********99989************************************** PP

  SQHop_cyclase_N  99 ArefilarGGvakvrvfTrilLalfglvpweavpalPpelmlLPkwfpfniykfsswaRttivPllilsakkpvaklpr..evdldELfveppe 190
                      Ar+++++ GG+ ++  + +++La++g+ +w+ v+ +Ppe+ lLP+w+p++ +++  + R++ +P+ ++++k+ v++  +  +   +ELf+ep++
       CCE29106.1 192 ARATLHKLGGAVNAPHWAKFWLATLGVASWDIVNPVPPEVWLLPDWVPISPWRWWIHMRQVFLPMGYIYSKRWVCEETDviRGLREELFTEPHA 285
                      ****************************************************************************98865666899****999 PP

  SQHop_cyclase_N 191 evkyelrkekk..alswtkl...flaldkv.lklle.rlplkplrkrAlrkaeewilerqeasgglggifp..amvnsvlaLrllgydldhpvv 275
                      e++   ++++     +++     ++a++ + +++++  l ++ ++++A + + + +  +   ++++  + p  a++n+v+++   g  +d   v
       CCE29106.1 286 EINWAAHRNSIapGDNYHPKswlLNAANWFfVNVWNpYLRPNFIKQWAEDWVSQLVDMEDA-NTDYLDLAPvnAAINTVMCYVRDG--PDAVSV 376
                      9998853332222111111111122222221223332334455555554444333333333.333333333115555555555544..444556 PP

  SQHop_cyclase_N 276 aralealekllv 287
                      +r +e l++ l+
       CCE29106.1 377 KRHIERLDECLW 388
                      666666666665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.21
  SQHop_cyclase_N  38 flgeddeeeeekiakylrsqqredGgWelypggp 71 
                      +l+++ + +e+ + + ++ +q  +GgW+    ++
       CCE29106.1 435 YLERQ-QIRENCVDQEMCYRQPRKGGWPFSNRDQ 467
                      44333.566777888999999999**99876555 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 1.7e-06
  SQHop_cyclase_N   1 ikraaeallslqkpdGhWvgeLeanvtitaeyillreflgedd....eeeeekiakylrsqqredGgWelypgg 70 
                      ikra++++ s+q+ dG W+g    + t  a +  l+ +  +++    ++  ++ + +l s+qr+dGgW+  ++g
       CCE29106.1 577 IKRATNWIKSNQRIDGSWYGSWGICFTY-ATMFALESMASIKEtygnSKISKRGCDFLISKQRADGGWSESYKG 649
                      799*****************98877765.455555555544431232556777789************977665 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.21
  SQHop_cyclase_N  48 ekiakylrsqqredGgW 64 
                      +k  k ++++q+e+G W
       CCE29106.1 686 KKGIKLIMERQQENGEW 702
                      45556666666666666 PP

>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0027        12       9      27 ..      98     116 ..      94     126 .. 0.82
   2 !   19.8   0.0   1.1e-07   0.00048       6      44 .]     142     181 ..     139     181 .. 0.90
   3 !   36.0   0.1   9.2e-13   4.1e-09       4      41 ..     578     614 ..     577     617 .. 0.94
   4 !   27.6   0.1   3.9e-10   1.8e-06       5      44 .]     628     673 ..     626     673 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0027
                  HHHHHSHTTS-BBSSTTSS CS
  Prenyltrans   9 fLlscQnedGGwggrpgse 27 
                  f ++ Q+++G+w++ +g++
   CCE29106.1  98 FFEKLQQPSGHWACEYGGP 116
                  55789********999986 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 1.1e-07
                  HHHHHHHHSH.TTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   6 avefLlscQn.edGGwggrpgsesdtyytywalaaLallG 44 
                  + ++L  + + edGGwg++ ++es++++   ++ +L l+G
   CCE29106.1 142 IKDYLTARADpEDGGWGLHTEGESTVFGITLNYMVLRLVG 181
                  679************************9988888888776 PP

  == domain 3  score: 36.0 bits;  conditional E-value: 9.2e-13
                  HHHHHHHHHHSHTTS-BBSSTTSSBBHHHHHHHHHHHH CS
  Prenyltrans   4 ekavefLlscQnedGGwggrpgsesdtyytywalaaLa 41 
                  ++a+++++s Q+ dG+w+g++g + +ty+t++al ++a
   CCE29106.1 578 KRATNWIKSNQRIDGSWYGSWGIC-FTYATMFALESMA 614
                  789*********************.*********9987 PP

  == domain 4  score: 27.6 bits;  conditional E-value: 3.9e-10
                  HHHHHHHHHSHTTS-BBSSTTS.......SBBHHHHHHHHHHHHHCT CS
  Prenyltrans   5 kavefLlscQnedGGwggrpgs.......esdtyytywalaaLallG 44 
                  + ++fL+s+Q++dGGw++++ +       e +  +++ + +++al+G
   CCE29106.1 628 RGCDFLISKQRADGGWSESYKGcetmeyhE-HPMGSLVVQTSWALIG 673
                  67********************88887765.7777777777777766 PP

>> Pec_lyase  Pectic acid lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.5   6.8e+03      56      76 ..     421     441 ..     419     448 .. 0.81
   2 ?    7.9   0.0   0.00038       1.7      41      94 ..     606     658 ..     567     659 .. 0.79
   3 ?    0.4   0.0     0.075   3.4e+02      64      83 ..     685     704 ..     677     706 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.5
   Pec_lyase  56 kdekykdavrkglefllkaqY 76 
                 +dek++  + ++le+l ++q 
  CCE29106.1 421 NDEKWRPMLIRALEYLERQQI 441
                 689999999999999988886 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00038
   Pec_lyase  41 tvtellflaevykatkdekykdavrkglefllkaqYsnGgwpqfyPlkkg..Yseh 94 
                 t+  l+ +a++ ++ +++k     ++g +fl++ q + Ggw   y   +   Y+eh
  CCE29106.1 606 TMFALESMASIKETYGNSKI---SKRGCDFLISKQRADGGWSESYKGCETmeYHEH 658
                 55555555555555555544...579****************99975444336665 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.075
   Pec_lyase  64 vrkglefllkaqYsnGgwpq 83 
                 ++kg++ +++ q +nG w q
  CCE29106.1 685 LKKGIKLIMERQQENGEWLQ 704
                 789***************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 5254.08
//
Query:       CCE29107.1  [L=373]
Description: related to meiotic recombination protein rec12 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-21   76.0   1.2    3.8e-21   74.8   1.2    1.6  1  TP6A_N    Type IIB DNA topoisomerase
  ------ inclusion threshold ------
      0.067   13.1   0.0       0.13   12.2   0.0    1.4  1  DUF2399   Protein of unknown function C-terminus (DUF2399)


Domain annotation for each model (and alignments):
>> TP6A_N  Type IIB DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   1.2   4.2e-25   3.8e-21       1      62 []      81     142 ..      81     142 .. 0.99

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 4.2e-25
                 HHHHHHHHHHHHHHHHHHTT--EEHHHHHHHGGGS-SSHHHHHHHHHHHHHHHTS-GGGGTE CS
      TP6A_N   1 rkfaqllkvlelihelleegkvvTkRdiYYrdvelFksQaesdrliddievllgvsReeLnv 62 
                 +kfa+++++l+l h++l+++++ TkR i+Y+++elF++Q+++d+l+d ++v+l++ R++Ln+
  CCE29107.1  81 QKFARIVFILQLAHDALVSNTTLTKRSIFYQHQELFDTQRVVDELVDNLAVTLHLDRSDLNI 142
                 59***********************************************************8 PP

>> DUF2399  Protein of unknown function C-terminus (DUF2399)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05      0.13      40      83 ..     186     231 ..     157     235 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
     DUF2399  40 akaaplvctsGqpsaaalelldkl..aaagarlrYhGDfDwpGlai 83 
                   +  l+   G p  a+ ++l +l    + + + + +DfD++G++i
  CCE29107.1 186 CGQGLLITARGYPDMATRSFLSSLsrHRPDVPIFVLADFDPDGINI 231
                 4556689999**************777789**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2784.29
//
Query:       CCE29108.1  [L=184]
Description: related to ankyrin repeat-containing YAR1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-15   55.9   0.9    6.4e-09   35.9   0.3    2.6  3  Ank_5     Ankyrin repeats (many copies)
    1.3e-13   51.3   1.1    1.1e-12   48.3   0.2    2.1  2  Ank_2     Ankyrin repeats (3 copies)
    4.5e-09   35.8   1.0     0.0003   21.0   0.1    3.3  4  Ank_3     Ankyrin repeat
    7.2e-09   36.0   0.4     0.0027   18.2   0.1    2.4  2  Ank_4     Ankyrin repeats (many copies)
    2.1e-08   34.2   1.9      5e-05   23.6   0.6    2.7  3  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   5.9e-07    0.0021       7      55 ..      43      89 ..      40      90 .. 0.86
   2 !   35.9   0.3   1.8e-12   6.4e-09      13      56 .]      91     134 ..      87     134 .. 0.97
   3 ?   -2.4   0.0       1.9   6.9e+03      10      24 ..     152     166 ..     143     167 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.9e-07
       Ank_5  7 advnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55
                + ++++++g+ t+Lh+A  +g+++ vr+Ll  ++  +  +++ +t ld 
  CCE29108.1 43 ILLQAKNEGKSTALHMATGNGHLETVRRLL--QCFEGRPTDETQTYLDE 89
                56788999**********************..88888888888887775 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 1.8e-12
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +++gnt Lh+Aa +g++ +v+lL+++ga++ l +++++ +ldlA
  CCE29108.1  91 NEHGNTGLHWAALGGHLAIVKLLMEHGASPALANESNYVPLDLA 134
                 789****************************************9 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.9
       Ank_5  10 nrldgggntpLhvAa 24 
                   + ++g++ L +Aa
  CCE29108.1 152 MLESKNGESGLATAA 166
                 556677778888887 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.2   3.1e-16   1.1e-12      14      80 ..      42     121 ..      19     124 .. 0.75
   2 ?    1.1   0.0      0.17   6.1e+02       7      35 ..     137     167 ..     131     173 .. 0.59

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 3.1e-16
       Ank_2  14 klLl.egadpnkngktaLhyAakngnleivklLleh...............adndgrtpLhyAarsghleivklLlekgadin 80 
                 ++Ll ++++    + taLh A+ ng+le+v+ Ll+                a+++g+t Lh+Aa  ghl ivklL+e+ga++ 
  CCE29108.1  42 EILLqAKNE---GKSTALHMATGNGHLETVRRLLQCfegrptdetqtyldeANEHGNTGLHWAALGGHLAIVKLLMEHGASPA 121
                 444432222...348*******************934556656666776666699*********99*************9986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.17
       Ank_2   7 ngnlelvklLlegadpn.k.ngktaLhyAak 35 
                 n++  +v+++l++a +  + ng++ L +Aa+
  CCE29108.1 137 NEKRAVVEHFLASAGMLeSkNGESGLATAAE 167
                 4434577777744333342477887777776 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00012      0.43       4      25 ..      54      74 ..      52      78 .. 0.91
   2 !   21.0   0.1   8.3e-08    0.0003       1      29 [.      93     120 ..      93     122 .. 0.94
   3 ?   -0.6   0.0       0.9   3.2e+03       5      23 ..     130     148 ..     130     152 .. 0.83
   4 ?   -3.2   0.0         5   1.8e+04       1      12 [.     157     168 ..     157     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
       Ank_3  4 tpLhlAarsgnleivkfLlenk 25
                t+Lh+A  +g+le v+ Ll+ +
  CCE29108.1 54 TALHMATGNGHLETVRRLLQ-C 74
                9******************9.5 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 8.3e-08
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 +G+t Lh+Aa+ g+l+ivk+L e +ga +
  CCE29108.1  93 HGNTGLHWAALGGHLAIVKLLME-HGASP 120
                 79*********************.89987 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.9
       Ank_3   5 pLhlAarsgnleivkfLle 23 
                 pL lA ++ + ++v+ +l 
  CCE29108.1 130 PLDLANLNEKRAVVEHFLA 148
                 7899999999999998886 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 5
       Ank_3   1 nGetpLhlAars 12 
                 nGe+ L +Aa+s
  CCE29108.1 157 NGESGLATAAES 168
                 688888899886 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.4e-06     0.016       4      55 .]      28      72 ..      26      72 .. 0.82
   2 !   18.2   0.1   7.5e-07    0.0027       5      49 ..      98     141 ..      91     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.4e-06
       Ank_4  4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                +L ++a+ +++  +++Ll+      a +n+   talh+A  +g++e ++ Ll
  CCE29108.1 28 CLTALAEREKVSQAEILLQ------A-KNEGKSTALHMATGNGHLETVRRLL 72
                6777777778888888886......4.499999**************99887 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 7.5e-07
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnve 49 
                 Lh+aa  g+l +v+lL e+ga++    n+s   +l+ A ++++  
  CCE29108.1  98 LHWAALGGHLAIVKLLMEHGASPALA-NESNYVPLDLANLNEKRA 141
                 9*********************9886.999998998886666555 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00057         2       4      22 ..      54      72 ..      53      81 .. 0.87
   2 !   23.6   0.6   1.4e-08     5e-05       1      30 [.      93     123 ..      93     125 .. 0.91
   3 ?   -2.3   0.0       2.2   7.7e+03       5      22 ..     130     147 ..     128     152 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00057
                BHHHHHHHHTTHHHHHHHH CS
         Ank  4 TPLHlAatngkkriiklLL 22
                T+LH+A  ng+++ ++ LL
  CCE29108.1 54 TALHMATGNGHLETVRRLL 72
                9****999999****9999 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 1.4e-08
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 +GnT LH+Aa +g++ i+klL  hGA++++ 
  CCE29108.1  93 HGNTGLHWAALGGHLAIVKLLMeHGASPALA 123
                 69*****************999*****9865 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.2
                 HHHHHHHHTTHHHHHHHH CS
         Ank   5 PLHlAatngkkriiklLL 22 
                 PL lA  n k  +++ +L
  CCE29108.1 130 PLDLANLNEKRAVVEHFL 147
                 565644333333666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1435.13
//
Query:       CCE29109.1  [L=579]
Description: related to acetylhydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-39  133.3   0.0    9.6e-35  119.8   0.0    2.0  2  PAF-AH_p_II      Platelet-activating factor acetylhydrolase, 
     0.0024   16.8   0.0     0.0043   16.0   0.0    1.4  1  Chlorophyllase2  Chlorophyllase enzyme
  ------ inclusion threshold ------
      0.023   15.3   0.0      0.062   13.9   0.0    1.9  1  Abhydrolase_6    Alpha/beta hydrolase family
      0.076   12.0   0.0       0.13   11.3   0.0    1.3  1  Chlorophyllase   Chlorophyllase


Domain annotation for each model (and alignments):
>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   0.0   2.1e-38   9.6e-35       8     265 ..      24     333 ..      18     353 .. 0.75
   2 !   11.6   0.0   1.6e-05     0.073     306     358 ..     410     459 ..     354     476 .. 0.86

  Alignments for each domain:
  == domain 1  score: 119.8 bits;  conditional E-value: 2.1e-38
                  SS---SSSSEEE..............EEEEEESSST..TSEEEEEEEEE.S.SSSS-EEESS-SHH..HHHHHHHHHTS-HHHHHHH...HHHHTT-E CS
  PAF-AH_p_II   8 klpavsGpysvG..............Cedlmieekl..rgvflRlyypldkadedredelWlPkke..yaqGlsevlkasrlllnllf..kllvgslr 85 
                   +p+++Gpy+vG                    e+++   +v +R++yp+  a+ + +   WlP+ +  ++   s++++  ++l +++      +  + 
   CCE29109.1  24 AFPHYTGPYKVGtvdvevpvsdltspS--PAPEQAAdiSTVQFRVFYPA-AAESTEKPITWLPNPQrhHVSAYSKFAGIGSRLADVISflPRHLHYTI 118
                  689*********999999955555321..2223332349**********.5466777778**998722456778888888888887731134566677 PP

                  EEEEET--...B--S.S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT.......--EEEE-----G...GG CS
  PAF-AH_p_II  86 lpvkknel...lktk.ekyPlivFsHGLgafRtlYsalcielAskGfvvaavEHrDesAaatyvlkdklaaeeeeevvesrekewiklrkvke...ee 176
                  +pv+kn++   ++t+ +++P ++FsHGLg+ R+ Ys ++++lAs+G+vv+  EHrD sA+++++ + +++  ++    +s  +  +++ ++++    e
   CCE29109.1 119 IPVHKNAKtadIETEsKRWPTMIFSHGLGGGRNSYSYIAGSLASHGVVVVCPEHRDGSAVVSFI-RSANS--QPSRFFSSHTHRTVPYARISHqvsPE 213
                  899988752226788455********************************************99.54443..33334455555555555554423256 PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEE...EEEEEETHHHHHHH...........................H CS
  PAF-AH_p_II 177 evklrneqvkqRaqEcskaLkllreinlGepvenvldsdfdlqqlKdnldtsk...vaviGHsFGgAtvi...........................k 244
                    + r++q++ R  E+    ++++ i++ +  +n+  +   l++l + ld  +   ++  GHsFG+ t+                             
   CCE29109.1 214 VYEAREDQLRIRMWEIGLIHDAILAIDQDRSFTNLNLTTPTLAHLAGRLDVHEpgrIIFGGHSFGATTMHqflkcnyyanvpsvaamkrplytpardS 311
                  7789******************************9777889*********9877779999******99987777777777777777777776665533 PP

                  HHHH-.TTS-EEEEES---TTS CS
  PAF-AH_p_II 245 slsed.teFrcaialDaWmlPv 265
                  s+ ++ te   +++lD+W lP+
   CCE29109.1 312 SIRRQiTEKNVTMLLDMWCLPI 333
                  3333356677777888888886 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.6e-05
                  EEEETT--GGGGSGGGGSS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHH CS
  PAF-AH_p_II 306 vitvkGsvHqnfsDftfvlgkligkvlklkgeidpeealdiankaslaFLqkh 358
                   + v  s H ++sDf ++++ l  kv+      +pe al+++ +a l+ L+ +
   CCE29109.1 410 FFYVVNSAHLSQSDFGILFPWLTKKVFDAD---QPERALRLNLRAQLQVLRSN 459
                  55666799***************9999864...79***************987 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.6e-07    0.0043      12      53 ..     132     173 ..     128     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.6e-07
  Chlorophyllase2  12 teageYpvllflhGylllnslYsqlLkhiashgfivvapqly 53 
                      te+ ++p ++f hG+    + Ys +  ++ashg +vv p+  
       CCE29109.1 132 TESKRWPTMIFSHGLGGGRNSYSYIAGSLASHGVVVVCPEHR 173
                      567889*********************************754 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.4e-05     0.062       2      96 ..     141     318 ..     140     469 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
                    EEE--GC.....GCHHHHHHHHCCT.CEEEEE--TTS..T........................................................ CS
  Abhydrolase_6   2 lllHGagssassWlvapLaallaag.vhvlapDlpGh..G........................................................ 38 
                    ++ HG+g+++ s+    +a  la++ v  + + +p h  G                                                        
     CCE29109.1 141 IFSHGLGGGRNSYS--YIAGSLASHgV--V-VVCPEHrdGsavvsfirsansqpsrffsshthrtvpyarishqvspevyearedqlrirmweigl 231
                    67788887766663..44333355546..3.44555545555666666665555555544444444444444333333333333333333322222 PP

                    ........S-GGCS--HHHCHHH.HHHHCCTT.......TTSEEEEEETCHHHHHHHHHHCC.............EE...EEES-........... CS
  Abhydrolase_6  39 ........rsdpppldledladl.aalldelaa.....gggpvvlvGHSlGGalalaaapla...........lvvg...vlldp..........p 96 
                            +    + ++++ + l   +l++la+      +g+++  GHS+G++ + +    +              +    l+ p          +
     CCE29109.1 232 ihdailaiD---QDRSFTN-LNLtTPTLAHLAGrldvhEPGRIIFGGHSFGATTMHQ---FLkcnyyanvpsvA--AmkrPLYTPardssirrqiT 318
                    222222221...2244444.22222233333334445889999*********96666...33222322222210..11223333333333333320 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.9e-05      0.13      42      80 ..     133     171 ..     124     176 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.9e-05
  Chlorophyllase  42 eaGtypvvlflhGtllsnkfyskllnhiashGfivvaPq 80 
                     e   +p ++f hG     ++ys +   +ashG +vv P+
      CCE29109.1 133 ESKRWPTMIFSHGLGGGRNSYSYIAGSLASHGVVVVCPE 171
                     667899*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4576.51
//
Query:       CCE29110.1  [L=578]
Description: NAAP-1 amino acid permease NAAP1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.6e-139  463.6  35.4   7.6e-139  463.4  35.4    1.0  1  AA_permease    Amino acid permease
    6.4e-37  127.4  39.1    8.1e-37  127.1  39.1    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  463.4  35.4  8.5e-143  7.6e-139       1     474 [.      75     537 ..      75     542 .. 0.98

  Alignments for each domain:
  == domain 1  score: 463.4 bits;  conditional E-value: 8.5e-143
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ia+gg iG+g+fvg+g +ls +Gp+++l+++ ++g+++f v+ +lge+a+++p sggfytyasrf++p++Gf++G+nylf+w++vl+lelt+++
   CCE29110.1  75 HLHMIAIGGSIGAGFFVGSGGALSRGGPASMLICFSIVGFMVFNVVFALGELAVMYPISGGFYTYASRFIDPSFGFAVGWNYLFLWLVVLPLELTVCG 172
                  89************************************************************************************************ PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.....gfrflgdngsifknnlppgfa 191
                   +iq+w   ++ +   v++++flv++++in++g  +++e ef+++lik+i+++ f+i+  +l+ gg+p +g+     g+r+++d+g+     + +g  
   CCE29110.1 173 LVIQYW--DKETS-VAVWITIFLVAVIFINIFGSIGFAEEEFWASLIKLISVVVFMIIALVLVLGGGPRDGRyneywGARYWHDPGA-----FRNG-- 260
                  ******..77777.88***********************************************************************.....****.. PP

  AA_permease 192 keeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa...aspfvifikesgvs 286
                        + +f+svfv+++f+ftG+elv+++a+E+++P +s+P ai+qv++r+++fYvl+l+++gll+p +d+ ll++ a +   asp v+++++++++
   CCE29110.1 261 ------IRGFLSVFVTAAFSFTGTELVGLAAAETANPVRSLPSAIKQVFWRVIVFYVLGLFFVGLLIPSDDPRLLASQAYTdvkASPWVLIGHYAKLR 352
                  ......**********************************************************************99999***************** PP

  AA_permease 287 vlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwllii 384
                  +l +++n +il+++ls+++s+++ +sR+l++la++g+aPk++++v+++g+Pl+++++ ++++ la+++  ++ +  +vf++l ais+l+ l+ w+ i+
   CCE29110.1 353 GLDHFMNGIILISVLSIGVSAVFGGSRTLTALAQQGYAPKIFTYVDRSGRPLASVIVLILTGPLAYVNLTASGP--TVFDWLQAISGLAVLFAWGGIC 448
                  ******************************************************************88888888..********************** PP

  AA_permease 385 lsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                  ls++rfR a+  +g+ +ee++f+aa++++g++++l++++ +l +++++a+++ ++ ++  ++  f+++yl  +++l+++ g++ +++++ 
   CCE29110.1 449 LSHIRFRSAWAFHGHTLEEIPFRAAFGVYGSWIGLILCVVVLCAQFFTAIAP-PGLDGLNDVKGFFKSYLACPILLAFWAGGFAWKRTGW 537
                  ****************************************************.********************************99875 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.1  39.1     9e-41   8.1e-37       8     409 ..      78     503 ..      73     525 .. 0.81

  Alignments for each domain:
  == domain 1  score: 127.1 bits;  conditional E-value: 9e-41
  AA_permease_2   8 alvigsvigsgifvkn.laas.ggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    +++ig  ig+g+fv + +a+s ggpa++l+ + +v+ +++ v++++ El+ + p sgG y+y+++++ + ++f ++w ++f +++vl++ l+v++ 
     CCE29110.1  78 MIAIGGSIGAGFFVGSgGALSrGGPASMLICFSIVGFMVFNVVFALGELAVMYPISGGFYTYASRFIDPSFGFAVGWNYLFLWLVVLPLELTVCGL 173
                    799************9955556****99999977777779**********99******************************************** PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.......stetdt..ffpngwp 188
                     +++ ++    ++t  +++i  ++l+ v++ini+g  + a   ++  ++k++ +++++ii+ ++++ ggg  +           ++    f ng  
     CCE29110.1 174 VIQY-WD----KETSVAVWI-TIFLVAVIFINIFGSIGFAEEEFWASLIKLISVVVFMIIALVLVL-GGGPRDGryneywgARYWHDpgAFRNGIR 262
                    ****.54....345556664.5567788899*****9**************766666665555555.55444444877777444444668999*** PP

  AA_permease_2 189 gvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei......anlsnlgsvaalffeavggkvvaiiv 276
                    g+l+++ ++++sf+G e +   + e  +  + +p ai  ++  v+v+y+l  +++   +p d        a ++   s++ l  + +  + + +++
     CCE29110.1 263 GFLSVFVTAAFSFTGTELVGLAAAETANpvRSLPSAIKQVFWRVIVFYVLGLFFVGLLIPSDDPrllasqAYTDVKASPWVLIGHYAKLRGLDHFM 358
                    *************************777779******************************999677776333444556888888888899***** PP

  AA_permease_2 277 vilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalil 372
                    + +i +s+l ++ +av+g sr+l ala++g+ P+ f  v++ g+p++++i+  +   + ++ ++++  + +++l ++s l++++ ++ + ++ +  
     CCE29110.1 359 NGIILISVLSIGVSAVFGGSRTLTALAQQGYAPKIFTYVDRSGRPLASVIVLILTGPLAYVNLTASGPTVFDWLQAISGLAVLFAWGGICLSHIRF 454
                    ***************************************************99999888887777669***************9999988888877 PP

  AA_permease_2 373 rkkrphlkr..........pgk..ilvaiigalfllfllvalffppkgp 409
                    r      +           +g    ++++i ++++l + +++++ p g+
     CCE29110.1 455 RSAWAFHGHtleeipfraaFGVygSWIGLILCVVVLCAQFFTAIAPPGL 503
                    7554433222444766677444222355555555555555555655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 3991.32
//
Query:       CCE29111.1  [L=1309]
Description: related to ABC transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-81  271.5  33.7    3.9e-41  141.5  14.1    2.1  2  ABC_membrane    ABC transporter transmembrane region
    5.5e-67  224.5   0.0    7.1e-33  114.0   0.0    2.5  2  ABC_tran        ABC transporter
    5.7e-14   52.1   5.4    2.6e-05   23.8   0.4    4.1  3  SMC_N           RecF/RecN/SMC N terminal domain
    5.5e-08   32.4   0.5     0.0035   17.1   0.2    2.7  2  AAA_29          P-loop containing region of AAA domain
    1.9e-07   30.2   0.6      0.046   12.5   0.3    3.8  4  ABC_ATPase      Predicted ATPase of the ABC class
    2.8e-07   30.6   0.0      0.037   13.9   0.0    2.5  2  RsgA_GTPase     RsgA GTPase
    5.4e-07   29.1   0.0    0.00094   18.5   0.0    2.6  2  Zeta_toxin      Zeta toxin
    7.9e-07   29.6   1.4      0.006   17.0   0.1    3.2  3  AAA_16          AAA ATPase domain
    1.7e-06   28.4   0.6      0.065   13.5   0.0    3.8  3  AAA_22          AAA domain
    7.4e-05   22.6   0.0       0.14   11.8   0.0    2.2  2  AAA_15          AAA ATPase domain
    0.00011   21.8   0.5        0.3   10.6   0.1    2.8  3  AAA_25          AAA domain
    0.00061   20.2   0.0        1.3    9.4   0.0    4.1  4  AAA             ATPase family associated with various cellula
    0.00077   19.2   0.5        2.2    7.9   0.0    3.4  4  AAA_30          AAA domain
    0.00079   19.3   0.0        4.6    7.0   0.1    4.1  4  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
     0.0014   19.2   0.1       0.48   10.9   0.0    2.4  2  AAA_23          AAA domain
     0.0059   16.8   0.0        2.3    8.4   0.0    2.6  2  AAA_33          AAA domain
     0.0074   16.5   3.0        6.8    7.0   0.2    4.2  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
  ------ inclusion threshold ------
      0.011   14.9   0.0        3.5    6.7   0.0    2.3  2  G-alpha         G-protein alpha subunit
      0.027   14.0   0.1        6.4    6.2   0.0    2.4  2  AAA_7           P-loop containing dynein motor region
      0.035   14.1   0.1        9.9    6.2   0.0    3.4  3  AAA_5           AAA domain (dynein-related subfamily)
      0.087   12.7   0.1         14    5.6   0.0    2.6  2  Ploopntkinase3  P-loop Nucleotide Kinase3
       0.09   12.4   0.1         16    5.1   0.0    2.5  2  ATP-synt_ab     ATP synthase alpha/beta family, nucleotide-bi
       0.14   11.9   0.0         21    4.8   0.0    2.4  2  PRK             Phosphoribulokinase / Uridine kinase family
       0.15   12.2   0.1         18    5.5   0.0    2.6  2  MMR_HSR1        50S ribosome-binding GTPase
       0.15   12.0   0.1         14    5.5   0.1    2.6  2  APS_kinase      Adenylylsulphate kinase


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.5  14.1   5.5e-44   3.9e-41       3     272 ..      74     348 ..      72     350 .. 0.96
   2 !  135.9  11.6   2.8e-42     2e-39       2     270 ..     724     993 ..     723     996 .. 0.94

  Alignments for each domain:
  == domain 1  score: 141.5 bits;  conditional E-value: 5.5e-44
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHH CS
  ABC_membrane   3 liillailagvlsplfplvlgrildtlldkgdpet......ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffd 93 
                   ++il+a+++g+   l++lv+gr++ tl+d+++ +       ++++ ++l+++++g+++fil++ +++ll+  + r+++++r  ++k+ l+q++++fd
    CCE29111.1  74 VSILAAVASGAGIALQNLVFGRFVTTLTDFASGKItgetmrSDSSSLALYMVYIGIGRFILSYTYNSLLTFNAYRVVRTIRLVYLKAALSQEIAYFD 170
                   689**************************95555567788899****************************************************** PP

                   HSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH CS
  ABC_membrane  94 tnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgi 190
                     + G++ +  t++ + +  g++eklgl  q l+ f++++iv+f ++wkltl++l+i+p  i v+av a +      +  + +a+a+s+ae +ls  
    CCE29111.1 171 LGTGGSIATQATTNGRLILGGISEKLGLTAQGLSAFITAFIVAFATNWKLTLITLCIAPATIGVMAVTAVMEAGHATRILDIYAQANSFAEGVLSSA 267
                   ************************************************************************************************* PP

                   HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS.THHHHHHHHHHHHHHHH CS
  ABC_membrane 191 rtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgel.svgdlvvflslfailfg 272
                   rtV+af + ++ ++kf+ +l ea++ g k   ++g+l++  +++++l + la+w G+++  +ge+ s+g+  +f++lf++ + 
    CCE29111.1 268 RTVHAFEMRSRLVNKFDAYLAEAHRVGDKISPLYGILFSSEYCIIYLGFGLAFWQGFQMYGRGEVeSSGE--IFTVLFSVAIA 348
                   **************************************************************97725566..99999998665 PP

  == domain 2  score: 135.9 bits;  conditional E-value: 2.8e-42
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHH..SC CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdt..ns 96 
                   ilii+  + a ++ p ++++l+++ + ++ +g++   + n+y+ ++++l+++ fi+ ++  y  n +++ ls++ rr+ f+ ilrq+++ffd+  n+
    CCE29111.1 724 ILIIFGCVGASAAFPGQAILLANVSNAFTLQGSAMIDKGNFYAAMFIVLAAGCFISYFALGYATNLVSQTLSHTFRRQSFNDILRQDLQFFDReeNN 820
                   7899999999******************9884443347*********************************************************** PP

                   HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH CS
  ABC_membrane  97 vGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvll.ailpliilvsaviakilkklkkkeqkavakassvaeEslsgirt 192
                   +G l sr+ ++ + + +++g+++gl++ s+l+++g  +++++++wkl lv++ a lp ++ + ++  +    l ++ +k+++ + +va E++++irt
    CCE29111.1 821 TGALASRVDSNPQAILELMGFNVGLILISVLNILGCSVLGIVYSWKLGLVIVlAGLPPFVSSGFFKFRADAALDRTISKRNSTSAAVASEAVNAIRT 917
                   ************************************************98761567778888888888889999999******************** PP

                   HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHH CS
  ABC_membrane 193 VkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfail 270
                   V +++ e+ +l+++ ++l+ a k ++k  +  ++ ++ tq++ ++++al +w+G+ lv+ ge+ + d  +f++++ ++
    CCE29111.1 918 VSSLAIEQSVLNRYGDELDHAVKGSLKPMLKMMIWFALTQSIEYWFMALGFWYGCRLVSFGEIGIFD--FFVTFMGVF 993
                   **********************************************************999998888..999999887 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.0   6.5e-34   4.6e-31       1     137 []     417     575 ..     417     575 .. 0.88
   2 !  114.0   0.0   9.9e-36   7.1e-33       1     137 []    1064    1234 ..    1064    1234 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 6.5e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................... 79 
                 l+n sl++ +g+++a+vG++G+GKSt++ l+ + ++  +G+++ldg++++  ++++lr++++ ++qep lf+++ v +n                    
  CCE29111.1 417 LDNFSLSVPAGKVTALVGQSGSGKSTIVGLIERWYNVCSGDVKLDGRSITALNTNWLRRNVRLVQQEPVLFQGS-VFDNirhglvgtewqdapmdvqlt 514
                 79************************************************************************.*************88885555544 PP

                 ..HHHTC......HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ..xxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..esdee......iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                   +   e      +++++++l   +  +t +++++  LSgGqkqr+a+ar+++++pk+lllDE+t+
  CCE29111.1 515 kvQ---EaarlafAHDFITELPEGY--ETQIGQRGGLLSGGQKQRIAIARSVVSEPKILLLDEATS 575
                 332...1333555666666666555..89999999*****************************96 PP

  == domain 2  score: 114.0 bits;  conditional E-value: 9.9e-36
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79  
                  l+ ++l++k+g+  a+vG +G+GKSt++++l + ++p +G+i++dg+dl+e + + +r+ ++ ++qep+lf+++ +ren                  
  CCE29111.1 1064 LRGIDLEIKKGQFAAFVGASGCGKSTMIAMLERFYDPLSGSIRIDGDDLTELNPRLYRRIVSLVQQEPTLFQGT-IRENialgiddptssmegdapp 1159
                  57899*********************************************************************.********************** PP

                  ..........HHHTCHHHHHHHSTTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  ..........xxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   80 ..........esdeeiekalsklglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                             sd +ie+al+  +  +          t ++s++++LSgGq+qr+a+ar+l+++p++lllDE+t+
  CCE29111.1 1160 rssattadvsVSDTQIEAALRAANAWDfvsslpeGLSTAAGSNGTQLSGGQRQRIAIARSLIRNPSVLLLDEATS 1234
                  **99999999888888888888888888888877889999999******************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.4   3.6e-08   2.6e-05     135     213 ..     531     619 ..     413     624 .. 0.58
   2 ?    3.9   0.1     0.044        32      24      42 ..    1074    1092 ..    1063    1098 .. 0.83
   3 !   17.3   0.0   3.4e-06    0.0025     135     212 ..    1204    1279 ..    1189    1284 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.6e-08
                 T..............CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEE CS
                 x..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e..............lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtk 213
                 e              lLSgG+k+ +a+a       v+   + llDe  +aLD +   +v e l++ sk    ivi+++  +++kad++v ++k
  CCE29111.1 531 ElpegyetqigqrggLLSGGQKQRIAIAR----SVVSEPKILLLDEATSALDPHAEGIVQEALDRVSKGRTTIVIAHKLATIRKADNIVVMKK 619
                 1444444444444449*******988764....456667799*********************************************998766 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.044
                  SSEEEEEESTTSSHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx RF
       SMC_N   24 ksftaivGpNGSGKsnlld 42  
                   +f a vG+ G+GKs ++ 
  CCE29111.1 1074 GQFAAFVGASGCGKSTMIA 1092
                  46999**********9986 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 3.4e-06
                  TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE..-SSHHHCCC-SCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
       SMC_N  135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivi..slreemlekadklvgvt 212 
                  ++LSgG+++ +a+a       ++  ++ llDe  +aLD +  k+v + l e+ k+   i i  ++r  ++++ad ++  +
  CCE29111.1 1204 TQLSGGQRQRIAIAR----SLIRNPSVLLLDEATSALDTESEKIVQNALAEAAKKGDRITIavAHRLSTIKDADVICVFY 1279
                  58******9888764....4567778899**********************99997766651156677788888776555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   4.8e-06    0.0035      19      39 ..     424     444 ..     416     447 .. 0.82
   2 !   12.6   0.0   0.00012     0.086      16      41 ..    1068    1092 ..    1062    1098 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.8e-06
      AAA_29  19 idlkg.atlltGpsGsGKSTll 39 
                 +  +g +t l+G+sGsGKST++
  CCE29111.1 424 VP-AGkVTALVGQSGSGKSTIV 444
                 44.5669*************97 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00012
      AAA_29   16 tieidlkg.atlltGpsGsGKSTllDA 41  
                  ++ei+  g +  ++G+sG GKST++ A
  CCE29111.1 1068 DLEIKK-GqFAAFVGASGCGKSTMI-A 1092
                  567774.4599*************9.5 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.036        26     240     275 ..     422     457 ..     404     469 .. 0.85
   2 !    9.4   0.0   0.00056       0.4     304     353 ..     527     577 ..     524     623 .. 0.91
   3 ?   -2.1   0.0       1.7   1.2e+03     240     266 ..    1069    1096 ..    1058    1103 .. 0.84
   4 !   12.5   0.3   6.4e-05     0.046     298     353 ..    1180    1236 ..    1165    1280 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.036
                 EEE-SS.EEEEEE-TTSSHHHHHHHHHHCCSEE-TTS CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAlekGvynhvpgD 275
                 + +p G vt++vG    GKsT++  +e+  yn   gD
  CCE29111.1 422 LSVPAGkVTALVGQSGSGKSTIVGLIER-WYNVCSGD 457
                 6799999**************9988876.57766665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00056
                 TTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 304 pFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsAt 353
                  Fi++LPeg +t+        SG   q  +i++++  + k+lL+DE tsA 
  CCE29111.1 527 DFITELPEGYETQiGQRGGLLSGGQKQRIAIARSVVSEPKILLLDEATSAL 577
                 6***********966777889****************************95 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.7
                  EEE-SS.EEEEEE-TTSSHHHHHHHHHH CS
  ABC_ATPase  240 mgipkG.vtlIvGggfhGKsTLLeAlek 266 
                  + i+kG   + vG    GKsT++  le+
  CCE29111.1 1069 LEIKKGqFAAFVGASGCGKSTMIAMLER 1096
                  46899988899***********998886 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 6.4e-05
                  EEE--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase  298 kgvDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsAt 353 
                  + ++   F+++LPeg +t   +  ++ SG   q  +i+++l ++ ++lL+DE tsA 
  CCE29111.1 1180 RAANAWDFVSSLPEGLSTAaGSNGTQLSGGQRQRIAIARSLIRNPSVLLLDEATSAL 1236
                  5567778************44556789****************************95 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.1e-05     0.037      98     120 ..     426     448 ..     387     464 .. 0.84
   2 !   13.8   0.0   5.7e-05     0.041      96     120 ..    1070    1095 ..    1058    1108 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.1e-05
                  TTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinall 120
                  ++k+++lvGqSG GKSt++  + 
   CCE29111.1 426 AGKVTALVGQSGSGKSTIVGLIE 448
                  569***************98775 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 5.7e-05
                   HCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase   96 llkd.ktsvlvGqSGvGKStLinall 120 
                   ++k+ +++++vG SG GKSt+i +l 
   CCE29111.1 1070 EIKKgQFAAFVGASGCGKSTMIAMLE 1095
                   5555599***************9986 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0028         2      17      38 ..     428     449 ..     418     468 .. 0.83
   2 !   18.5   0.0   1.3e-06   0.00094      22      61 ..    1080    1119 ..    1072    1142 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0028
  Zeta_toxin  17 klillgGqpGAGKselaellkd 38 
                 k+  l+Gq+G+GKs++  l+++
  CCE29111.1 428 KVTALVGQSGSGKSTIVGLIER 449
                 56789***********998876 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1.3e-06
  Zeta_toxin   22 gGqpGAGKselaellkdelerqgnvvrldpDdlRelhPey 61  
                  +G++G+GKs+++++l++  ++ ++ +r+d+Ddl el P+ 
  CCE29111.1 1080 VGASGCGKSTMIAMLERFYDPLSGSIRIDGDDLTELNPRL 1119
                  699***********************************84 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0013      0.93      22      45 ..     427     448 ..     415     501 .. 0.86
   2 ?   -2.1   0.0       6.3   4.5e+03      22      41 ..     595     600 ..     566     702 .. 0.61
   3 !   17.0   0.1   8.3e-06     0.006      26     161 ..    1076    1250 ..    1064    1260 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0013
      AAA_16  22 grpelvllsGesGvGKsslvrell 45 
                 g   ++ l+G+sG+GKs++v  + 
  CCE29111.1 427 G--KVTALVGQSGSGKSTIVGLIE 448
                 3..6889*************8765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.3
      AAA_16  22 grpelvllsGesGvGKsslv 41 
                 gr+              ++v
  CCE29111.1 595 GRT--------------TIV 600
                 433..............333 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 8.3e-06
      AAA_16   26 lvllsGesGvGKsslv...rellralekdggiflrgkcdqlesaipysa.laqalareellrqllde...............aesaeleawreklee 103 
                     ++G+sG+GKs+++   ++++++l+++    +r + d+l   +++ + l + +   +l++q+ +                +              
  CCE29111.1 1076 FAAFVGASGCGKSTMIamlERFYDPLSGS----IRIDGDDL---TELNPrLYRRI-V-SLVQQEPTLfqgtirenialgiddP-------------- 1149
                  56789***********4545555588888....********...66655566666.4.6666666663333333444444441.............. PP

      AAA_16  104 ala.......................avpelagaea....srllellkrll.allsrder.................plvlvlDdlq.wadeaslql 154 
                   ++                       + ++l++a a    s+l e l+ ++ +  ++                    p vl+lD++   +d++s ++
  CCE29111.1 1150 -TSsmegdapprssattadvsvsdtqIEAALRAANAwdfvSSLPEGLSTAAgSNGTQ--LsggqrqriaiarslirnPSVLLLDEATsALDTESEKI 1243
                  .33444444444444444565655554444444444555555555555555222222..13466666666666666689999999986777788888 PP

      AAA_16  155 laaLlrl 161 
                   ++ l++
  CCE29111.1 1244 VQNALAE 1250
                  6655544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1    0.0015         1       6      29 ..     428     451 ..     426     471 .. 0.89
   2 ?   -0.2   0.0       1.6   1.1e+03      80     117 ..     550     593 ..     511     607 .. 0.64
   3 !   13.5   0.0   9.1e-05     0.065       4      71 ..    1073    1172 ..    1069    1262 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0015
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                 ++++++G+sG+GK+t +  + +++
  CCE29111.1 428 KVTALVGQSGSGKSTIVGLIERWY 451
                 6799************99999988 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.6
      AAA_22  80 ealeqalrarav...ielliiDEaqh.lr.s.eealeeLrslln 117
                  + ++ + ar+v   +++l++DEa   l+ + e +++e  +++ 
  CCE29111.1 550 GQKQRIAIARSVvsePKILLLDEATSaLDpHaEGIVQEALDRVS 593
                 44555555555578888*******99887624666666655555 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 9.1e-05
      AAA_22    4 tagilvvtGesGtGKTtllrrlleqldeeakaee............erpevvfvtlpsst.sskdllrellralglelka................. 70  
                  + ++ + +G sG+GK+t +++l + +d  +   +              +++v+   +++t  + +++++++  +++++++                 
  CCE29111.1 1073 KGQFAAFVGASGCGKSTMIAMLERFYDPLSGSIRidgddltelnprLYRRIVSLVQQEPTlFQGTIRENIALGIDDPTSSmegdapprssattadvs 1169
                  788999*******************985444444666666664333222222222222223444445555555554444466665555555555555 PP

      AAA_22   71 ..e 71  
                     
  CCE29111.1 1170 vsD 1172
                  550 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0022       1.6      19      44 ..     424     448 ..     416     460 .. 0.86
   2 !   11.8   0.0    0.0002      0.14      17      64 ..    1067    1111 ..    1063    1143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0022
      AAA_15  19 idlseeltvliGkNnsGKSsileald 44 
                 ++  + +t l+G  +sGKS+i+ +++
  CCE29111.1 424 VPAGK-VTALVGQSGSGKSTIVGLIE 448
                 55566.9**************99886 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0002
      AAA_15   17 veidlsee.ltvliGkNnsGKSsilealdlFlnnkekknkkvikieked 64  
                  +++++++  +  ++G+ ++GKS+ + +l+ F +      +  i i+ +d
  CCE29111.1 1067 IDLEIKKGqFAAFVGASGCGKSTMIAMLERFYDPL----SGSIRIDGDD 1111
                  45566665799********************9866....4445555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00042       0.3      30      50 ..     424     444 ..     412     447 .. 0.92
   2 !    8.1   0.0    0.0025       1.8      30      50 ..    1071    1091 ..    1049    1096 .. 0.87
   3 ?   -3.2   0.0       7.5   5.3e+03     140     176 ..    1221    1252 ..    1174    1264 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00042
      AAA_25  30 lpagelallaGapgtGKttla 50 
                 +pag++++l+G++g+GK+t++
  CCE29111.1 424 VPAGKVTALVGQSGSGKSTIV 444
                 69*****************85 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0025
      AAA_25   30 lpagelallaGapgtGKttla 50  
                  + +g +a+++Ga+g+GK+t+ 
  CCE29111.1 1071 IKKGQFAAFVGASGCGKSTMI 1091
                  6799***************96 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 7.5
      AAA_25  140 vegvrlvviDplsralggdensnsdvgalvealeria 176 
                  + ++ ++ +D  ++al+ +++     + + +al++ a
  CCE29111.1 1221 IRNPSVLLLDEATSALDTESE-----KIVQNALAEAA 1252
                  345788888888887777544.....33333333333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0         1   7.3e+02       3      18 ..     432     447 ..     430     481 .. 0.88
   2 ?    0.8   0.0      0.83     6e+02      49      74 ..     556     580 ..     531     614 .. 0.68
   3 ?    2.8   0.0       0.2   1.4e+02       3      19 ..    1079    1095 ..    1077    1141 .. 0.76
   4 !    9.4   0.0    0.0018       1.3      47     118 ..    1211    1272 ..    1176    1281 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 1
                 EESSTTSSHHHHHHHH CS
         AAA   3 lyGppGtGKTllakav 18 
                 l+G  G GK++++  +
  CCE29111.1 432 LVGQSGSGKSTIVGLI 447
                 89*********99766 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.83
                 HHHHHHHTS.TSEEEEEETGGGHHHHH CS
         AAA  49 lfkeakeka.kpsilfiDEidalaksr 74 
                  +  a++   +p+il++DE+ +     
  CCE29111.1 556 AI--ARSVVsEPKILLLDEATSALDPH 580
                 33..33333469*******98876655 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.2
                  EESSTTSSHHHHHHHHH CS
         AAA    3 lyGppGtGKTllakava 19  
                  ++G  G+GK++++  + 
  CCE29111.1 1079 FVGASGCGKSTMIAMLE 1095
                  89*********997765 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0018
                  HHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHH CS
         AAA   47 relfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpa 118 
                  r+ ++ a++   +ps+l++DE+ +   ++      +e+ v+n+L ++ ++ ++     i i++++r +++++a
  CCE29111.1 1211 RQRIAIARSLIrNPSVLLLDEATSALDTE------SEKIVQNALAEAAKKGDR-----ITIAVAHRLSTIKDA 1272
                  45555555555679***********9999......888899999988888777.....99******9999887 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0031       2.2      19      43 ..     428     452 ..     422     477 .. 0.86
   2 ?   -3.5   0.0       9.7     7e+03      85     112 ..     561     588 ..     518     594 .. 0.75
   3 !    6.6   0.0     0.008       5.8      18      43 ..    1074    1099 ..    1067    1108 .. 0.83
   4 ?   -0.4   0.1       1.1   8.2e+02      81     116 ..    1211    1251 ..    1165    1261 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0031
      AAA_30  19 rvavltGpAGtGKttalkalreawe 43 
                 +v++l+G  G+GK+t+++ +++ ++
  CCE29111.1 428 KVTALVGQSGSGKSTIVGLIERWYN 452
                 5999*************99988776 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 9.7
      AAA_30  85 rlepgtllivDEagmvdtkqlaallkaa 112
                  +++ ++l+ DEa  +   +++ ++++a
  CCE29111.1 561 VVSEPKILLLDEATSALDPHAEGIVQEA 588
                 3455589999999988877777777776 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.008
      AAA_30   18 drvavltGpAGtGKttalkalreawe 43  
                   ++a+ +G+ G GK+t+++ l++ ++
  CCE29111.1 1074 GQFAAFVGASGCGKSTMIAMLERFYD 1099
                  458999*************9998876 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.1
      AAA_30   81 k.....grarlepgtllivDEagmvdtkqlaallkaaekag 116 
                  +     +r  +++ ++l+ DEa  +  ++ +++++ a ++ 
  CCE29111.1 1211 RqriaiARSLIRNPSVLLLDEATSALDTESEKIVQNALAEA 1251
                  1455554445666699*****99985555555555554433 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0064       4.6       1      20 [.     429     448 ..     429     477 .. 0.86
   2 ?    2.2   0.0      0.17   1.3e+02     237     294 ..     547     601 ..     505     603 .. 0.82
   3 ?    3.1   0.0     0.099        71       1      24 [.    1076    1099 ..    1076    1131 .. 0.74
   4 ?    0.7   0.0       0.5   3.6e+02     236     271 ..    1205    1237 ..    1202    1256 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0064
      AAA_21   1 lnvliGpNgsGKSnLLdald 20 
                 +++l+G  gsGKS++  +++
  CCE29111.1 429 VTALVGQSGSGKSTIVGLIE 448
                 69************987775 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.17
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvil 294
                 lS G+k+ +a++ ++ + +   ++ll+DE  + L+P++   + e l++ s++++ +++
  CCE29111.1 547 LSGGQKQRIAIARSVVSEP---KILLLDEATSALDPHAEGIVQEALDRVSKGRTTIVI 601
                 6888888878888888877...9*************9876666777777776666655 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.099
      AAA_21    1 lnvliGpNgsGKSnLLdaldllar 24  
                  +++++G+ g+GKS+ +  l+ + +
  CCE29111.1 1076 FAAFVGASGCGKSTMIAMLERFYD 1099
                  689***********9888877655 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.5
      AAA_21  236 elSdGtkrllalltallralkkgsllliDEpEngLH 271 
                  +lS G+++ +a++ +l+r +   s+ll+DE  + L+
  CCE29111.1 1205 QLSGGQRQRIAIARSLIRNP---SVLLLDEATSALD 1237
                  7999**9999*******999...*******766665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00068      0.48      19      36 ..     427     444 ..     412     471 .. 0.87
   2 ?    5.6   0.0     0.028        20      20      38 ..    1075    1093 ..    1062    1096 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00068
      AAA_23  19 kgltlItGpNGaGKTTil 36 
                  ++t+++G+ G+GK+Ti+
  CCE29111.1 427 GKVTALVGQSGSGKSTIV 444
                 579**************8 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.028
      AAA_23   20 gltlItGpNGaGKTTildA 38  
                   + +++G  G+GK+T +  
  CCE29111.1 1075 QFAAFVGASGCGKSTMIAM 1093
                  57799**********9975 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.024        17       1      16 [.     429     444 ..     429     499 .. 0.87
   2 !    8.4   0.0    0.0031       2.3       4      33 ..    1079    1119 ..    1077    1162 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.024
      AAA_33   1 lvllvGlpGsGKstla 16 
                 ++ lvG +GsGKst +
  CCE29111.1 429 VTALVGQSGSGKSTIV 444
                 5679**********86 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0031
      AAA_33    4 lvGlpGsGKstlaerl...lkklg.avllssdt.......l 33  
                  +vG++G+GKst +  l   + +l   ++++ d+       l
  CCE29111.1 1079 FVGASGCGKSTMIAMLerfYDPLSgSIRIDGDDltelnprL 1119
                  8**********988773334444478888888855555554 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.2    0.0095       6.8      21      80 ..     535     581 ..     519     591 .. 0.68
   2 ?    6.0   0.2     0.019        14      62      84 ..    1222    1244 ..    1192    1250 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0095
     SbcCD_C  21 gkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDees 80 
                 g e+++ ++ g lSGG+kq +   a+a   ++++       + +++++LDEA s lD++ 
  CCE29111.1 535 GYETQIGQRGGLLSGGQKQRI---AIA---RSVV-------SEPKILLLDEATSALDPHA 581
                 566666666677777777432...333...2333.......34899**********9876 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.019
     SbcCD_C   62 palrlvfLDEAFsklDeesiatl 84  
                  +++++++LDEA s lD es + +
  CCE29111.1 1222 RNPSVLLLDEATSALDTESEKIV 1244
                  35889***********9987655 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0049       3.5      28      47 ..     432     451 ..     427     477 .. 0.88
   2 ?    5.7   0.0    0.0096       6.9      28      49 ..    1079    1100 ..    1067    1154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0049
                 EEESTTSSHHHHHHHHHHHC CS
     G-alpha  28 llGqseSGKsTilkqlklly 47 
                 l+Gqs+SGKsTi+  +++ y
  CCE29111.1 432 LVGQSGSGKSTIVGLIERWY 451
                 89**********99888777 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0096
                  EEESTTSSHHHHHHHHHHHCS- CS
     G-alpha   28 llGqseSGKsTilkqlkllykk 49  
                  ++G+s++GKsT++  l+++y++
  CCE29111.1 1079 FVGASGCGKSTMIAMLERFYDP 1100
                  79*****************976 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.021        15      28      50 ..     422     444 ..     414     451 .. 0.86
   2 ?    6.2   0.0    0.0089       6.4      27      53 ..    1068    1094 ..    1062    1102 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.021
       AAA_7  28 lllknkkpvllvGptGtGKtvii 50 
                 l + ++k + lvG++G+GK++i+
  CCE29111.1 422 LSVPAGKVTALVGQSGSGKSTIV 444
                 5677889999***********97 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0089
       AAA_7   27 elllknkkpvllvGptGtGKtviikdl 53  
                  +l +k+++   +vG +G+GK+++i  l
  CCE29111.1 1068 DLEIKKGQFAAFVGASGCGKSTMIAML 1094
                  56678889999************9865 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.014       9.9       4      23 ..     432     451 ..     430     462 .. 0.88
   2 ?   -1.6   0.0       3.4   2.4e+03      63      90 ..     562     590 ..     538     595 .. 0.76
   3 ?    3.2   0.0      0.11        80       5      22 ..    1080    1097 ..    1078    1105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.014
                 EE--SSSSHHHHHHHGGGGB CS
       AAA_5   4 LvGppGtgKselaerlaaal 23 
                 LvG++G+gKs+++  + + +
  CCE29111.1 432 LVGQSGSGKSTIVGLIERWY 451
                 9************9998766 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.4
                 --G-SEEEEESGGG--.HHHHHHHHHHHH CS
       AAA_5  63 aregeilvlDEverae.sevlnsLlslle 90 
                 + e++il+lDE + a  +++ ++++  l+
  CCE29111.1 562 VSEPKILLLDEATSALdPHAEGIVQEALD 590
                 3499*******999887777777777666 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.11
                  E--SSSSHHHHHHHGGGG CS
       AAA_5    5 vGppGtgKselaerlaaa 22  
                  vG++G+gKs+++  l ++
  CCE29111.1 1080 VGASGCGKSTMIAMLERF 1097
                  8**********9888776 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.051        36       7      26 ..     431     450 ..     426     463 .. 0.81
   2 ?    5.6   0.0     0.019        14       8      28 ..    1079    1099 ..    1073    1115 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.051
  Ploopntkinase3   7 ylvGqPGaGkstlmaeltkg 26 
                      lvGq G+Gkst++  + + 
      CCE29111.1 431 ALVGQSGSGKSTIVGLIERW 450
                     69**********98766555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.019
  Ploopntkinase3    8 lvGqPGaGkstlmaeltkgfd 28  
                      +vG+ G+Gkst++a l + +d
      CCE29111.1 1079 FVGASGCGKSTMIAMLERFYD 1099
                      79**************99887 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.022        16       1      37 [.     413     450 ..     413     456 .. 0.84
   2 ?    4.2   0.0     0.041        29      11      36 ..    1071    1096 ..    1065    1102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.022
                  SSHHHHHH.S-EBTT-EEEEEESTTSSHHHHHHHHHHH CS
                  xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDal.fpivqGqrtlipgafgvGktvisqslskq 37 
                  G++vlD + +++  G+ t+++g++g Gk++i+  + ++
   CCE29111.1 413 GVKVLDNFsLSVPAGKVTALVGQSGSGKSTIVGLIERW 450
                  89999987357788999**************9888776 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.041
                   EBTT-EEEEEESTTSSHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   11 ivqGqrtlipgafgvGktvisqslsk 36  
                   i +Gq  + +ga+g+Gk++++++l +
   CCE29111.1 1071 IKKGQFAAFVGASGCGKSTMIAMLER 1096
                   679*****************999865 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0      0.03        21       3      24 ..     431     452 ..     429     479 .. 0.76
   2 ?    4.5   0.0     0.035        25       4      23 ..    1079    1098 ..    1076    1121 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.03
         PRK   3 gvagsSGaGkttvarklekifg 24 
                 ++ g+SG+Gk+t+   +e   +
  CCE29111.1 431 ALVGQSGSGKSTIVGLIERWYN 452
                 789**********999998877 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.035
         PRK    4 vagsSGaGkttvarklekif 23  
                    g+SG+Gk+t+ + le   
  CCE29111.1 1079 FVGASGCGKSTMIAMLERFY 1098
                  579********998887654 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.083        60       3      16 ..     431     444 ..     429     478 .. 0.88
   2 ?    5.5   0.0     0.025        18       2      19 ..    1077    1094 ..    1076    1103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.083
                 EEEESTTSSHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLi 16 
                 a+vG++ +GKSt++
  CCE29111.1 431 ALVGQSGSGKSTIV 444
                 89**********86 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.025
                  EEEEESTTSSHHHHHHHH CS
    MMR_HSR1    2 vaivGrpNvGKStLinal 19  
                  +a+vG +  GKSt+i  l
  CCE29111.1 1077 AAFVGASGCGKSTMIAML 1094
                  589***********9765 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1      0.02        14       3      39 ..     428     463 ..     426     476 .. 0.72
   2 ?    3.5   0.0     0.085        61       6      41 ..    1078    1112 ..    1073    1120 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.02
                 EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHH CS
  APS_kinase   3 vvvwltGlsgsGKstianalekkLvekgisvylLdGd 39 
                  v  l G sgsGKsti   +e+  +      + LdG 
  CCE29111.1 428 KVTALVGQSGSGKSTIVGLIERWYNVCSG-DVKLDGR 463
                 567799**********9999976554333.3345665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.085
                  EEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH CS
  APS_kinase    6 wltGlsgsGKstianalekkLvekgisvylLdGdnv 41  
                   + G sg GKst+  +le+   +     +++dGd +
  CCE29111.1 1078 AFVGASGCGKSTMIAMLERF-YDPLSGSIRIDGDDL 1112
                  589**********9999965.445556667788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.96u 0.28s 00:00:01.24 Elapsed: 00:00:00.47
# Mc/sec: 8378.58
//
Query:       CCE29112.1  [L=455]
Description: related to monocarboxylate transporter 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-10   40.8  52.3    1.3e-10   40.8  52.3    2.8  3  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.72    9.7   3.1        8.2    6.2   0.6    2.5  2  Pam17     Mitochondrial import protein Pam17


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2     0.064   5.8e+02      85     115 ..      45      74 ..      35      82 .. 0.66
   2 !   40.8  52.3   1.4e-14   1.3e-10      36     351 ..      85     402 ..      45     404 .. 0.75
   3 ?   -2.7   7.2      0.23   2.1e+03     120     153 ..     386     419 ..     380     454 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.064
       MFS_1  85 lw.lllvlrvlqGlgagalfpagaaliadwfp 115
                  w +l+++ ++ Gl+  ++fp+++ ++  +++
  CCE29112.1  45 AWlFLCASFLMEGLA--LGFPGAYGVFQSYYS 74 
                 454666666666665..477777766666655 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 1.4e-14
       MFS_1  36 l..lltlyalgaavaslplGrlsdrfG..rrrvlllglllfalglllll.fasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa 128
                 l  ++t+ +  + +++++++++   +    r+  l+g+ll++l+ l+++ f++ +  l+    vl G+g ++++  ++a++ +wf k ++g a+g++ +
  CCE29112.1  85 LpaVATCATGIFYLGMPVTMSIQRLYPnlTRWAPLAGILLMSLS-LVGAsFSTKVAhLIGTQGVLFGIGISFAYCPCVAYVNEWFIK-RKGTAYGIMWS 181
                 2424555555555566666666554766799999**********.6666598888867777789**********************9.*********** PP

       MFS_1 129 gfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllf...ffgf 223
                 g++++  + p +   ++ ++g+r +  + a+++l+  + l+++  p+ pp+ +r+s++           ++ ++  l++     ++++ l +   ++g 
  CCE29112.1 182 GTGFSGSILPFVLNSMLRAWGFRTTLRVWAAAFLVITLpLVYFIKPRLPPQLARPSKRNP---------LD-FRFTLSRT----FMLHQLANvvqGLGS 266
                 ***********************************9998877777777777777766666.........77.99999999....566666662334566 PP

       MFS_1 224 sglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsll 322
                 ++ +++lp+y+ +vlg +g   +++++ +l+l++ ++++  g+l d l   + l++a +++++++++l  ++++  + ++l+ + ++G+++g + ++++
  CCE29112.1 267 FLPSIFLPTYAASVLGAGG-TASAATILVLSLGTTVACPAMGWLTDQLHVTTCLFIATFGAAVSTFFLWGFSTS--YGMFLVYCGCFGIFAGSYATAWT 362
                 669999999*********7.67777899999999999**********999666666666666666655555555..99999999999999999888888 PP

       MFS_1 323 alasdlappeeag...........tasglfntagslggal 351
                  ++ +++  + +            ++++++ t +++gg+l
  CCE29112.1 363 GIMRQVTTDNDMSsaydcdavdpaMVLSVMATGRGIGGVL 402
                 8888777555555566666666668888888888888777 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.23
       MFS_1 120 graigllsagfslGailgpllggllasslgWrav 153
                 +++++++++g ++G +l  +l+ +l+    Wr+ 
  CCE29112.1 386 AMVLSVMATGRGIGGVLSGPLSEALIRGMPWRGE 419
                 6788888888888888888888888866666654 PP

>> Pam17  Mitochondrial import protein Pam17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1    0.0081        73      62      89 ..     289     311 ..     235     326 .. 0.67
   2 ?    6.2   0.6   0.00092       8.2      52      91 ..     367     406 ..     338     414 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0081
       Pam17  62 tqqilglDplvvlglatlasgalGwllG 89 
                  ++i     lv+   +t+a+ a+Gwl+ 
  CCE29112.1 289 AATI-----LVLSLGTTVACPAMGWLTD 311
                 3333.....77778899*********85 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00092
       Pam17  52 avlstleidptqqilglDplvvlglatlasgalGwllGpv 91 
                 +v +  ++ +      +Dp +vl+++ ++ g+ G l Gp+
  CCE29112.1 367 QVTTDNDMSSAYDCDAVDPAMVLSVMATGRGIGGVLSGPL 406
                 44445555566667789*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3136.00
//
Query:       CCE29113.1  [L=455]
Description: related to monocarboxylate transporter 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-15   56.4  51.9    2.3e-15   56.4  51.9    2.6  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.2    9.0   3.3        3.4    7.5   0.3    2.4  2  Pam17     Mitochondrial import protein Pam17


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4  51.9   2.6e-19   2.3e-15      30     352 ..      81     403 ..      44     404 .. 0.78
   2 ?   -3.0   5.7      0.29   2.6e+03     122     151 ..     388     417 ..     383     454 .. 0.60

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 2.6e-19
       MFS_1  30 spseigllltlyalgaavaslplGrlsdrfG..rrrvlllglllfalglllll.fasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraig 124
                  +s +  ++t+ +  + +++++++++   +    r+  l+g+ll++l+ l+++ f++ ++ l++   vl G+g+++++  ++a++ +wf k ++g a+g
  CCE29113.1  81 GASGLPAVATCAMGIFYLGMPIIMSIQRLYPnlTRWAPLAGILLMSLS-LVGAsFSTKVThLIVTQGVLFGIGSSFAYCPCVAYVNEWFIK-RKGTAYG 177
                 23333447777777788888888888776867799999**********.66665999999999999************************9.******* PP

       MFS_1 125 llsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllf... 219
                 ++ +g++l+  + p +   ++ ++g+r +  + a+++l+  + l+++  p+ pp+ +r+s++           ++ ++  l++     ++++ l +   
  CCE29113.1 178 IMWSGTGLSGSILPFVLNSMLRAWGFRTTLRVWAAAFLVITLpLVYFIKPRLPPQLARPSKRNP---------LD-FRFTLSRT----FMLHQLANivq 262
                 ***************************************9998877777777777777766666.........77.99999999....55555555222 PP

       MFS_1 220 ffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvf 318
                 ++g ++ +++lp+y+ +vlg +g   +++++ l++l++ ++++  g+l drl+  + l++a +++++++++l  ++++    l+l+ ++++G+++g ++
  CCE29113.1 263 GLGSFLPSIFLPTYAASVLGVGG-TPSAVTILLMSLGTTVACPAMGWLTDRLQVTTCLFVATFGAAVSTFFLWGFSTS--FGLFLVYCACYGMFAGSYT 358
                 4577779999999*********7.78888888889999899************9777777777777777666665555..999999**********999 PP

       MFS_1 319 psllalasdlappeeag...........tasglfntagslggalg 352
                 ++++ l+ +++  + +            ++++++ t +++gg+l+
  CCE29113.1 359 TAWTGLMRQVTTDKDMSsaydcdavdpvMVISVMATGRGIGGVLS 403
                 999999999986555555777777888888888888888888875 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.29
       MFS_1 122 aigllsagfslGailgpllggllasslgWr 151
                 +i+++++g ++G +l  +l+ +l+    Wr
  CCE29113.1 388 VISVMATGRGIGGVLSGPLSEALIRGMPWR 417
                 677777777777777777777666433333 PP

>> Pam17  Mitochondrial import protein Pam17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2     0.024   2.2e+02      71      88 ..     293     310 ..     248     326 .. 0.81
   2 ?    7.5   0.3   0.00038       3.4      51      91 ..     361     406 ..     341     417 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.024
       Pam17  71 lvvlglatlasgalGwll 88 
                 l++   +t+a+ a+Gwl+
  CCE29113.1 293 LLMSLGTTVACPAMGWLT 310
                 45566789********97 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00038
       Pam17  51 a.....avlstleidptqqilglDplvvlglatlasgalGwllGpv 91 
                 +     +v + +++ +      +Dp++v++++ ++ g+ G l Gp+
  CCE29113.1 361 WtglmrQVTTDKDMSSAYDCDAVDPVMVISVMATGRGIGGVLSGPL 406
                 14333344555566666677789*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3482.96
//
Query:       CCE29114.1  [L=138]
Description: uncharacterized protein CPUR_02805 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1048.76
//
Query:       CCE29115.1  [L=94]
Description: uncharacterized protein CPUR_02806 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 716.08
//
Query:       CCE29116.1  [L=139]
Description: uncharacterized protein CPUR_02807 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1183.01
//
Query:       CCE29117.1  [L=288]
Description: uncharacterized protein CPUR_02808 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-22   78.6   0.6    1.6e-21   76.9   0.6    1.8  1  Voldacs   Regulator of volume decrease after cellular swellin
  ------ inclusion threshold ------
      0.087   12.9   0.0       0.15   12.1   0.0    1.4  1  DUF523    Protein of unknown function (DUF523)


Domain annotation for each model (and alignments):
>> Voldacs  Regulator of volume decrease after cellular swelling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.6   1.8e-25   1.6e-21       1     123 [.      84     188 ..      84     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 1.8e-25
     Voldacs   1 gdLyvtesrllwvsekansgisipypsIalHAiqrdkk.deqeepclyvqldeeldesdnkeseegededdneededeeessveltlvPknaeetildn 98 
                 +d++v +++++ ++++++sg+sipypsI++HA++r    d +  + + +qld                   +  ++d++  +velt+ P ++e+  +++
  CCE29117.1  84 VDVFVHSENCTIFCPNTESGVSIPYPSISIHAVTRSSAqDGEGNSSVWMQLDF-----------------ADGGSDDDDFNTVELTISPADSED--AQK 163
                 79******999999889******************9888899999*****766.................445667777889**********88..*** PP

     Voldacs  99 ifealsacqelhpdpdeeddeedee 123
                 +++a+++c++lhpdp+  d e+d++
  CCE29117.1 164 LYDAVANCSNLHPDPAHGDGEDDDC 188
                 ****************555555543 PP

>> DUF523  Protein of unknown function (DUF523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.7e-05      0.15      17      67 ..      75     123 ..      66     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
      DUF523  17 kakksevleeelkelvke.elvpvCPEvaggLptPRepaelakrvlkkeged 67 
                 +a++  +l++++  +v++ +++ +CP ++ g ++P +++ ++  v++++ +d
  CCE29117.1  75 DAEQ--TLKQTVDVFVHSeNCTIFCPNTESGVSIPYPSISIH-AVTRSSAQD 123
                 4444..578888888877788999*****************4.344444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 2532.26
//
Query:       CCE29118.1  [L=1140]
Description: uncharacterized protein CPUR_02809 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.38    9.1   1.6       0.61    8.4   1.6    1.2  1  SID-1_RNA_chan   dsRNA-gated channel SID-1
       0.84   10.0  14.4       0.27   11.6   9.8    2.5  2  EPL1             Enhancer of polycomb-like
        2.9    7.9   5.3        5.5    7.0   5.3    1.3  1  Glyco_hydro_4C   Family 4 glycosyl hydrolase C-terminal domai


Domain annotation for each model (and alignments):
>> SID-1_RNA_chan  dsRNA-gated channel SID-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.6    0.0001      0.61     152     210 ..     261     319 ..     167     337 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0001
  SID-1_RNA_chan 152 ekrvkessssesaseslesvssavrsesessveeesdydtleeiesdknvirtkkvlvv 210
                     ++ +++ +++e++ +++++ +++ +++++++ +++++ + l++i++++++  ++ +l +
      CCE29118.1 261 QYSQQSLQQQEQEMQQQQQQQQQQQQQQQQQQQQKQQEQQLQQIQHQQQIKSQHLYLQL 319
                     33333333334444444444444455555556667777778888878777777777665 PP

>> EPL1  Enhancer of polycomb-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   9.8   4.5e-05      0.27      22      77 ..     267     359 ..     256     431 .. 0.53
   2 ?   -1.5   0.1      0.49   2.9e+03      46      74 ..     683     706 ..     662     793 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.5e-05
        EPL1  22 ldeseseeeiseknsnkensqqavetgvdkkeenekhqviaaakkkesssasske............................................ 76 
                 l+  ++e+e+++++++++++qq++++++++k ++e++     ++ +++++ +s++                                            
  CCE29118.1 267 LQ--QQEQEMQQQQQQQQQQQQQQQQQQQQK-QQEQQ----LQQIQHQQQIKSQHlylqlhqpppqqelrvqkrrhgsviegshtapnfatlashdegp 358
                 22..223333333333333322222222222.22222....2222233333333333333333333455555555555555555555555555555555 PP

        EPL1  77 s 77 
                  
  CCE29118.1 359 R 359
                 2 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.49
        EPL1  46 etgvdkkeenekhqviaaakkkesssass 74 
                 et+ +++++      ia++ +++s ++ s
  CCE29118.1 683 ETQHKAQTK-----YIAQSASESSFTSVS 706
                 111111111.....222222222222222 PP

>> Glyco_hydro_4C  Family 4 glycosyl hydrolase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.3   0.00091       5.5      51     106 ..     246     305 ..     220     345 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00091
                     HHHSSEEECGGHHCTTSS.....HCHHHH..SHHHHHHH..HHHHHHHHHHHTTTTTHHHHHHH CS
  Glyco_hydro_4C  51 rrlgllpteysrhyaEYvp....ylkrea..peliekek..traevvkevekelfeelekekle 106
                     r+ +l+ ++y  hy  Y +     +++e+  +   ++++  +++++ ++++k+  ++l++  ++
      CCE29118.1 246 RQRELYENPYRGHYRQYSQqslqQQEQEMqqQ--QQQQQqqQQQQQQQQQQKQQEQQLQQ--IQ 305
                     3778999*******999998743222222221..22111222223333333333333333..22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4870  (0.271627); expected 358.6 (0.02)
Passed bias filter:                     1378  (0.0768587); expected 358.6 (0.02)
Passed Vit filter:                       470  (0.0262145); expected 17.9 (0.001)
Passed Fwd filter:                        81  (0.00451782); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.89u 0.40s 00:00:02.29 Elapsed: 00:00:00.56
# Mc/sec: 6168.06
//
Query:       CCE29119.1  [L=499]
Description: uncharacterized protein CPUR_02810 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-83  279.4   0.2      4e-83  279.0   0.2    1.2  1  DUF1996   Domain of unknown function (DUF1996)


Domain annotation for each model (and alignments):
>> DUF1996  Domain of unknown function (DUF1996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.0   0.2   2.2e-87     4e-83       1     233 []      33     283 ..      33     283 .. 0.96

  Alignments for each domain:
  == domain 1  score: 279.0 bits;  conditional E-value: 2.2e-87
     DUF1996   1 DPivspgevsshvHtivGgsafnasltyeelrkskctscevkeDkSnYWvptLYfk.kengsferveqkggllvYYllekkkekkvtafpkgfrmiaGd 98 
                 DPiv+pg++s+h+H+++G+++++as++++ l +++ctsc+v++D+S+YW+p+LYf+ +++ +++ v+q gg+l+YYll+    k+vtafpkgf+m+aG+
  CCE29119.1  33 DPIVNPGTASPHAHALHGSNGISASSDSAGLMNGDCTSCRVTQDMSAYWHPALYFEdAATHELTLVPQVGGMLAYYLLYG---KNVTAFPKGFQMVAGS 128
                 9******************************************************9677778****************54...68************** PP

     DUF1996  99 ptlr........................ekslaqkaisftcleseekeeaeeetkelpkk..tkkkcasglraeilfpsCwdgknldspdhkshvayps 171
                 +t+r                        +++l+q+ai f+cl++++++e++ ++++lp+k   +++ca+g+r+e++fpsCw+g++lds++hk+h+ayp+
  CCE29119.1 129 NTRRtytvgdasqpdppksdwaglgqttQSALEQRAIGFNCLNYAKAPEGTLYRHKLPDKsyLDANCANGVRFELMFPSCWNGRDLDSENHKDHMAYPD 227
                 *************************998888999**************************9989**********************************9 PP

     DUF1996 172 kveesegkCpeshpvrlpqlfyeviwdtekfnkkedgksqpfvlsngdktGyglHaDFinGW 233
                  v+  +g+C ++hpvr+p+l++e+iwdt+ f++    +++++vlsngd+tGyg+H+DF++GW
  CCE29119.1 228 LVM--DGNCKSTHPVRVPSLLFEIIWDTTVFKN----RNGRYVLSNGDTTGYGMHGDFVTGW 283
                 998..9*************************93....4679********************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3680.76
//
Query:       CCE29120.1  [L=916]
Description: uncharacterized protein CPUR_02811 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-09   34.9   0.1      0.015   15.4   0.0    4.1  4  TPR_2     Tetratricopeptide repeat
      1e-06   28.3   0.0       0.12   12.2   0.0    3.5  3  TPR_1     Tetratricopeptide repeat
    1.6e-05   24.7   0.0    3.3e-05   23.7   0.0    1.6  1  UBA       UBA/TS-N domain
    3.1e-05   24.2   1.3    0.00014   22.1   0.1    2.5  2  TPR_12    Tetratricopeptide repeat
      0.008   16.3   0.0          8    7.0   0.0    3.1  3  TPR_8     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.025   14.1   0.5      0.089   12.2   0.5    2.0  1  PBP_sp32  Proacrosin binding protein sp32
       0.25   11.8   3.5        1.1    9.7   0.8    3.2  2  DUF732    Protein of unknown function (DUF732)


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.6   9.3e+03       5      17 ..     394     406 ..     392     417 .. 0.56
   2 !   15.4   0.0   5.7e-06     0.015       4      32 ..     621     649 ..     619     650 .. 0.92
   3 !    9.1   0.0   0.00061       1.6       3      30 ..     658     685 ..     656     686 .. 0.92
   4 ?    5.2   0.2     0.011        28       2      29 ..     716     743 ..     715     744 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.6
       TPR_2   5 ynlGlayyklgdy 17 
                 +  +++++k g+ 
  CCE29120.1 394 FKTANSLWKTGQK 406
                 5556666666664 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 5.7e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldP 32 
                 +   G a++k+gdy+ A+  + +Al+l P
  CCE29120.1 621 HRLEGTAHFKRGDYATAHSSYSRALSLIP 649
                 567899********************988 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00061
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 +l n++l  +k gd ++A+ + ++Al l
  CCE29120.1 658 LLTNRALTSLKTGDTDQAITDADEALTL 685
                 5789*********************986 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.011
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                 +al + ++a++++ +++ A+  +++++e
  CCE29120.1 716 KALTRKAEALEQREKWASAASVWQQCVE 743
                 68999********************987 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.8e-05      0.12       8      32 ..     625     649 ..     622     650 .. 0.95
   2 !   10.7   0.0   0.00014      0.36       4      30 ..     659     685 ..     656     686 .. 0.93
   3 ?    0.7   0.0      0.21   5.5e+02       2      28 ..     716     742 ..     715     743 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.8e-05
                 HHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   8 GnayfklgkydeAleyyekALelnP 32 
                 G a+fk g+y  A   y++AL+l P
  CCE29120.1 625 GTAHFKRGDYATAHSSYSRALSLIP 649
                 89********************987 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALel 30 
                 l n++++ +k g+ d+A+ + ++AL+l
  CCE29120.1 659 LTNRALTSLKTGDTDQAITDADEALTL 685
                 89***********************87 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekAL 28 
                 kal +++ a+ + +k+  A    ++++
  CCE29120.1 716 KALTRKAEALEQREKWASAASVWQQCV 742
                 799************999977766665 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.3e-08   3.3e-05       3      37 .]     302     338 ..     300     338 .. 0.95

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHHTTS-HHHHHHHHHHTTT..SHHHHHHHH CS
         UBA   3 eeaiqrLveMGFdreevveALratgn..NeErAveyL 37 
                   a++ Lv+ GF++e++++ Lr++g   N+++A+++L
  CCE29120.1 302 DRAVAHLVDYGFSPEDARRGLRQSGSglNVQAAANWL 338
                 6799********************************9 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   5.5e-08   0.00014       9      74 ..     624     685 ..     616     686 .. 0.90
   2 ?   -0.5   0.1      0.59   1.5e+03       5      25 ..     717     737 ..     711     745 .. 0.52

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.5e-08
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                  +++++++g+y+ A + + +al ++   +   hpl ++ l n + + +++g++++A+    eal +
  CCE29120.1 624 EGTAHFKRGDYATAHSSYSRALSLI---P-AGHPLMIILLTNRALTSLKTGDTDQAITDADEALTL 685
                 5899*********************...5.45**************************99999975 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.59
      TPR_12   5 alnnlaavlrrlgrydeAlel 25 
                 al++ a++l ++++++ A + 
  CCE29120.1 717 ALTRKAEALEQREKWASAASV 737
                 344445555555555555544 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0         7   1.8e+04      11      22 ..     400     411 ..     397     415 .. 0.59
   2 !    5.7   0.0    0.0076        20       8      32 ..     625     649 ..     623     650 .. 0.92
   3 !    7.0   0.0    0.0031         8       4      30 ..     659     685 ..     658     687 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 7
                 HHHTT-HHHHHH CS
       TPR_8  11 ylklgdyeeAke 22 
                 ++k+g++++ ++
  CCE29120.1 400 LWKTGQKKMQQA 411
                 677777665544 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0076
                 HHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldp 32 
                 g +++k gdy  A ++y +al+l p
  CCE29120.1 625 GTAHFKRGDYATAHSSYSRALSLIP 649
                 7799******************988 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0031
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekalel 30 
                 + n +++ lk+gd ++A+    +al+l
  CCE29120.1 659 LTNRALTSLKTGDTDQAITDADEALTL 685
                 5789999*****************987 PP

>> PBP_sp32  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   3.5e-05     0.089     192     237 ..      76     120 ..      38     125 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.5e-05
    PBP_sp32 192 apeakpkeeqllekkqeqleehkteekkkqeeqeeeekeeeakqee 237
                 a ++kpk++  l ++q+qle+ k++++++++ q ee+    a+q +
  CCE29120.1  76 AGQSKPKQNLSLAERQAQLEAEKRKKEEEKRRQTEEQ-FGSAQQWD 120
                 45679*****************************999.67777765 PP

>> DUF732  Protein of unknown function (DUF732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.35     9e+02       7      47 ..      51      89 ..      46     119 .. 0.79
   2 ?    9.7   0.8   0.00043       1.1       8      86 ..     224     305 ..     218     311 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.35
      DUF732  7 aaalllaapAaAdsaddaFlaalnqagiaygspdaaialGk 47
                +aa  ++a AaA +a d F + l+ ag   ++p+++++l++
  CCE29120.1 51 GAANPVSAKAAAIPAKDSFSNLLSLAGQ--SKPKQNLSLAE 89
                56666788899999********999998..66666666665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00043
      DUF732   8 aalllaapAaAdsaddaFlaalnq..agiaygspdaa.ialGkavCkkldsGksaeavvaevkndnsglspeqaaqfvgaAv 86 
                 +++++aa A++ + dd+Fl +l++  ++i +++++++ +a   +  ++++s  s ++vv++ ++++++  +  a++ +  Av
  CCE29120.1 224 TSAATAAAASTPADDDDFLGDLAKpvEEIRMKQQQQQrVAEPGRLTEEIESSSSEDDVVRSRAREQGSERASGANKELDRAV 305
                 33344444443355777******94456666666555588888899***********9999988755555566666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1220  (0.0680462); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 5933.13
//
Query:       CCE29121.1  [L=166]
Description: probable ubiquitin-conjugating enzyme ubcP3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-50  170.1   0.0    2.3e-50  169.9   0.0    1.0  1  UQ_con     Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.062   13.0   0.0       0.17   11.6   0.0    1.6  1  Prok-E2_B  Prokaryotic E2 family B


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.9   0.0   2.5e-54   2.3e-50       1     138 [.       9     158 ..       9     160 .. 0.98

  Alignments for each domain:
  == domain 1  score: 169.9 bits;  conditional E-value: 2.5e-54
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGS............ CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLk............ 87 
                 rl +e++ l++++p+gi+a+++++++l +w++li+gpe+tp+egg+F +el+fp+dYPl pP++kfv +i+HPnv++sG vc++iL+            
  CCE29121.1   9 RLLQEYRALTNEPPDGITAGPISEDDLLHWECLIQGPEGTPFEGGIFPAELKFPKDYPLAPPTMKFVGDIWHPNVYPSGLVCISILHapgddpnhyeha 107
                 799********************99**********************************************************************9999 PP

                 TTT--TTSHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
      UQ_con  88 eekWspaltlesvllsiqsLlaepnpesplnkeaakllkkdreeykkkvke 138
                 +e+Wsp +++e++l+s++s+laepn+esp+n+eaak++++ r+ey+kkv++
  CCE29121.1 108 SERWSPIQSVEKILISVMSMLAEPNDESPANVEAAKMWRERRAEYEKKVRD 158
                 888*********************************************975 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.9e-05      0.17      34      89 ..      51     105 ..      37     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.9e-05
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLCl..lee.eldldewd 89 
                 +gg+++ +l +p+++pl+pp +  +      + p +++ +g +C   l++ + d++ ++
  CCE29121.1  51 EGGIFPAELKFPKDYPLAPPTMKFVGDI---WHPNVYP-SGLVCIsiLHApGDDPNHYE 105
                 799*******************999877...9999***.99999633455555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1257.12
//
Query:       CCE29122.1  [L=800]
Description: related to cysteinyl-tRNA synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.8e-110  369.0   0.0   2.7e-110  368.4   0.0    1.2  1  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
    9.6e-05   21.3   0.3       0.33    9.7   0.0    2.5  2  tRNA-synt_1g  tRNA synthetases class I (M)
  ------ inclusion threshold ------
       0.07   13.6   0.0       0.07   13.6   0.0    2.3  3  DALR_2        DALR domain
       0.11   11.4   3.6       0.28   10.1   0.0    2.4  2  tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic d


Domain annotation for each model (and alignments):
>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.4   0.0  6.1e-114  2.7e-110       2     292 ..      18     444 ..      17     452 .. 0.95

  Alignments for each domain:
  == domain 1  score: 368.4 bits;  conditional E-value: 6.1e-114
                   ---SBTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHH.TT-EEEEEEEBB--SHHHHHHHHHTTS-.......................... CS
  tRNA-synt_1e   2 vkpleekkvtlYvCGptvydashlGhaRslvafDilrrilqa.lgYdvqfvqnvtDidDkiikrareeeks.......................... 71 
                   ++p+e +kv++Y CGptvyd shlGhaR++v+ Di+rri+ + ++ +v++v n+tD+dDkii +ar++ +                           
    CCE29122.1  18 FVPIEPGKVSWYACGPTVYDSSHLGHARNYVSSDIIRRIMMHyFQLKVTYVMNMTDVDDKIIIKARRQRLLdlekkkncskqelrhlglaafrayaa 114
                   578999********************************98777*************************9999************************* PP

                   ..............................................................................................HHH CS
  tRNA-synt_1e  72 ..............................................................................................vke 74 
                                                                                                                 +++
    CCE29122.1 115 nnlslladdaskldeteyitrrdaaygrvltggtlsgegkpgdaeakikmhlgnmnaaaealkqdaifpgadevllpyldslyketvdttdqtiFTD 211
                   ************************************************************************************************* PP

                   HHHHHHHHHHHHHHHTT----SB--BGGGGHHHHHHHHHHHHHTTSEEE-TTS-EEE-GGG-T....TTTTTTT--HHHHHHT----S-.....-S- CS
  tRNA-synt_1e  75 laekfieefkkdleaLnvlkptleprvsekvdeiielvekliekgyaYavsdgdvyfdvskke....eYgklskqnleelelgaegevs.....eek 162
                   l++++++ f +d+++Lnvl+p++ +rv+e+v++i ++ve++++kg+aY+++ g vyfd  ++e    +Y++l ++++++ +l++ege+s      +k
    CCE29122.1 212 LTKRMEALFLEDMDNLNVLRPDVITRVTEYVPQIARFVERVVDKGFAYEAE-GSVYFDIGAFEaagnTYARLRPESKNDKSLQEEGEGSlsknlGGK 307
                   **************************************************9.******9876422228****************999999999999* PP

                   SSTT-EEEEEE--TTS--B--TTSSEEE-SSHHHHHHHHHHH-SSEEEEEEEGGGTTTHHHHHHHHHHHHS.....S.S--EEEEEEE--EEETTBE CS
  tRNA-synt_1e 163 kdkkDfaLWkaskegepswdsPwgkGRPGWhieCsvmaskllgseidihsGGiDLafPhhenelaqseaaf.....d.kqlvkyflhnghlkiegek 253
                   + + DfaLWk+sk+gep w+s wg+GRPGWhieCsvmas++lgs++d+hsGGiDLafPhh+nelaqsea+f     + +++v+yflh ghl+i g k
    CCE29122.1 308 RGPGDFALWKKSKAGEPFWPSRWGNGRPGWHIECSVMASDILGSQMDVHSGGIDLAFPHHDNELAQSEAYFcqhgkGeHTWVNYFLHMGHLSITGSK 404
                   ********************************************************************997444432368***************** PP

                   --TTTT---BHHHHH.TTS-HHHHHHHHHSS-TTS-EEE- CS
  tRNA-synt_1e 254 msksLknfitikdvl.kkfdprqlRllllsahyrsqldfk 292
                   msksLknf ti d+l +++++r +R+++l  ++++ ++ +
    CCE29122.1 405 MSKSLKNFQTIADALaTNYTARSMRIVFLMGRWNDGVEIS 444
                   *************99458****************988765 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1    0.0001      0.45      12      60 ..      37      86 ..      30     108 .. 0.78
   2 !    9.7   0.0   7.3e-05      0.33     310     356 ..     387     434 ..     377     486 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0001
                  S---HHHHHHHHHHHHHHHHHHHT.T-EEEEEEEE---SHHHHHHHHHTT CS
  tRNA-synt_1g 12 gklHlGhllevisaDifaRykrlr.geevlfvcgtDehGtpielkAekeg 60
                  ++ HlGh+++++s+Di+ R        +v++v  +     +i +kA+++ 
    CCE29122.1 37 DSSHLGHARNYVSSDIIRRIMMHYfQLKVTYVMNMTDVDDKIIIKARRQR 86
                  679***************98654437788888887777788888887765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 7.3e-05
                   ---S-EEEE--EEE--------------HHHHHHH.H-HHHHHHHHHH CS
  tRNA-synt_1g 310 klpkkvvaheyltvegkKlSkSrgvvvkakealer.ldadllRYylaa 356
                   + ++     ++l + g+K+SkS +++ ++ +al + ++a  +R ++++
    CCE29122.1 387 TWVNYFLHMGHLSITGSKMSKSLKNFQTIADALATnYTARSMRIVFLM 434
                   5566677889****************9999998887999999988776 PP

>> DALR_2  DALR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       3.2   1.4e+04      34      59 ..      97     124 ..      87     126 .. 0.54
   2 ?   13.6   0.0   1.6e-05      0.07       3      57 ..     505     559 ..     503     564 .. 0.79
   3 ?   -4.1   1.5         4   1.8e+04      23      40 ..     713     731 ..     710     742 .. 0.46

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.2
                 -HHHHHHH.HHHHHHH.HGGGT-S-S-H CS
      DALR_2  34 dkaaasal.kallrel.aevLGllqeep 59 
                 +k++++ l  a++r+  a+ L ll +++
  CCE29122.1  97 SKQELRHLgLAAFRAYaANNLSLLADDA 124
                 4444444433444443477888877765 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.6e-05
                 HHHHTBT--HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHGGGT-S-S CS
      DALR_2   3 eeaMdDDFNTaeAiavlFelakeiNralkeedkaaasalkallrelaevLGllqe 57 
                 ++a+ + F T+ A+ v+  l++++N + ke++  ++s  +a+ r + ++ G++  
  CCE29122.1 505 QAALTNSFDTPRAMLVILRLVNTANIYVKENKDFDLSHIEAVARWITKIVGIFGL 559
                 7899999*******************88888777777776666666777776654 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 4
                 HHHHHH.HHHTT-HHHHHH CS
      DALR_2  23 akeiNr.alkeedkaaasa 40 
                 a+e+ + a+kee++ a ++
  CCE29122.1 713 AREAEKaAKKEEARLAREK 731
                 5555553333333333333 PP

>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   6.2e-05      0.28      49      98 ..     213     262 ..     202     266 .. 0.82
   2 ?   -1.0   3.1      0.14   6.4e+02      99     146 ..     699     742 ..     695     759 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.2e-05
                   -HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE- CS
  tRNA-synt_1c  49 keeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvce 98 
                   ++ +e+  led++ l++   + +t+ +++  ++ +++e+++ kG AY +e
    CCE29122.1 213 TKRMEALFLEDMDNLNVLRPDVITRVTEYVPQIARFVERVVDKGFAYEAE 262
                   4455666778888888766678*************************976 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.14
                   STHHHHHHHHCCSSHSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EE CS
  tRNA-synt_1c  99 ctkeeleeereeqeklgskerdrydeenlklfeeemkkgkaegekavv 146
                    ++eel + ree+ + +  +++  ++e ++l +e+++  +++ eka v
    CCE29122.1 699 IPAEELIRAREEKAARE--AEKAAKKEEARLAREKAE--QEAREKAKV 742
                   67899999999976666..333334444444434333..333344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1305  (0.0727871); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 5259.89
//
Query:       CCE29123.1  [L=491]
Description: related to GCN4 translational repressor GCD14 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-65  220.0   0.0      6e-46  157.1   0.0    2.3  2  GCD14     tRNA methyltransferase complex GCD14 subunit


Domain annotation for each model (and alignments):
>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1   0.0   3.3e-50     6e-46       1     140 [.     133     282 ..     133     286 .. 0.91
   2 !   60.6   0.0   9.7e-21   1.7e-16     138     246 ..     301     439 ..     291     440 .. 0.66

  Alignments for each domain:
  == domain 1  score: 157.1 bits;  conditional E-value: 3.3e-50
       GCD14   1 gfvyvlaptPeLWtlaLphrtqilytaDisliimkLelkpGsvvvesGtGsgslshaiartv...aP......tGhlftfefheqraekareefrehel 90 
                 gf+yvl+ptPeLWt +Lphrtq++yt+D s + ++++ +pGs+++e+G+Gsgs++ha ar+v    P      +G++f+fefhe r +k + e ++h l
  CCE29123.1 133 GFIYVLRPTPELWTSSLPHRTQVVYTPDYSYVLQRIRARPGSRIIEAGAGSGSFTHASARAVyngYPtsetdvKGKVFSFEFHEPRFQKMQVEIKNHLL 231
                 8************************************************************9544243333337************************* PP

       GCD14  91 sqlvtvthrDvckeGf.deevsgkvDavfLDlPaPweaiphaakalkkegg 140
                 +++v+vthrDv  eGf  ++ s +++a+fLDlPaPwea+ h+++    +gg
  CCE29123.1 232 EDIVQVTHRDVYDEGFlVDGKSPNANAIFLDLPAPWEALHHLSRRKTLKGG 282
                 ****************87888899*****************9987666666 PP

  == domain 2  score: 60.6 bits;  conditional E-value: 9.7e-21
       GCD14 138 eggrlCsfsPCieqvqrtceaLrelgfteietlevllrtyevrkskleeidlaekrleene.....rkriekakrrka...........skdakvedks 220
                 +++ +C+fsPCieqv rt+ +Lr lg+t+i+++e+  r++++ + +     + ++  e ++      +r++++++++a           +         
  CCE29123.1 301 HSAYICTFSPCIEQVTRTVTELRTLGWTDIDMVEIAHRRFNIMRDRAGAGAVPTDVSEAVKklksdLQRTQNFHKTQAippasdeseskM--------- 390
                 6789*************************************9988876655544444444400000455555555555454433322220......... PP

       GCD14 221 sks.........................stevllkPvselkghtgyLtfat 246
                                             + +v+ +  ++lk+ht+yL+fa 
  CCE29123.1 391 --DvdeiapnspeqasdendskgdapwmQGNVVHRTENDLKTHTSYLVFAI 439
                 ..12223444444454444445555665566666666************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3718.52
//
Query:       CCE29124.1  [L=113]
Description: probable small nuclear ribonucleoprotein SM D3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-16   58.5   0.2    5.8e-16   57.9   0.2    1.2  1  LSM       LSM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.2   3.2e-20   5.8e-16       2      66 ..      11      74 ..      10      75 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 3.2e-20
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEGGGEEEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRGnnivlis 66
                +l++ ++++vt+e ++g+++rG+L   +++mN++L+d+++t +d+ ++ +l++v+iRG+++++ +
  CCE29124.1 11 LLNEAQGHIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDG-RVSHLEQVYIRGSHVRFFI 74
                799******************************************.****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 881.86
//
Query:       CCE29125.1  [L=652]
Description: uncharacterized protein CPUR_02816 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 4255.19
//
Query:       CCE29126.1  [L=351]
Description: related to chitinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-12   48.0   0.0    3.8e-12   46.6   0.0    1.6  1  Glyco_hydro_18  Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   2.1e-16   3.8e-12      16     227 ..      29     230 ..      13     269 .. 0.77

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 2.1e-16
                     C.......SHTTTESEEEEEEEEEEETTTEEEESS.TTHHHHHH.HHHHHHHHTSTT-EEEEEEEETTTTTHHHHHHTSHHHHHHHHHHHHHHHH CS
                     x.......xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  16 y.......lpsaklthiiyaFakidgengkvvvsd.wedlgnfe.qlkklkkkknpgvkvllsiGGwtdssgfslaastdasrkkfadsvvsllr 101
                     +        ps  +th+i+a ++++ +   +++ d      +f+  +++l+ +++ g+kvl  +GG+++ ++++ + +t+++ + + + + +l++
      CCE29126.1  29 VsllplltQPSISITHVILAAIHLNLHPDPLTLNDhPPHHPRFQpLWAELRILQASGIKVLGMLGGAAK-GSYARLDGTPDDFEFYYAPLRALIQ 122
                     1343343333889***********99777888888777777887457889999999**********996.9************************ PP

                     HCT-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSHHHHHHH....CHHHHHHHHT....SEEEEETTTSSSTTS CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx....xxxxxxxxxxxxxxx RF
  Glyco_hydro_18 102 kygfDGiDidweypggnpedkenytallkelrealdkakategkkllLsaavpasasdlskg....ydlpkiakyl....DyvnvmtYDfhgswd 188
                     + g+DG+D+d e p +     ++  +l+ +lr+ ++        ++l+++a+ a a   s+      d++++  +      + n ++Y     w 
      CCE29126.1 123 ERGLDGLDLDVEEPMS----LAGVIRLIDRLRADFG-------ADFLITMAPVAMALLDSEKnlsgFDYEALEVMRgheiAWYNTQFY---CGWG 203
                     ************8877....999**********666.......58******9887776322245554555555555656889999999...6677 PP

                     SBE--SS-SSBTCSSHHHHHHHHHHTT--GGGEEEEEES CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 189 nvtghhaplydaslnvdeavkeylkagvpakklvlGvpf 227
                     +            l+   + + +l++g  a+k+v+Gv +
      CCE29126.1 204 D------------LSNTLMFDLMLQKGWRADKIVVGVVT 230
                     7............4444445788899*********9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2685.52
//
Query:       CCE29127.1  [L=395]
Description: uncharacterized protein CPUR_02818 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2982.62
//
Query:       CCE29128.1  [L=197]
Description: uncharacterized protein CPUR_02819 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-31  107.8   0.7      4e-31  107.2   0.7    1.3  1  FLILHELTA  Hypothetical protein FLILHELTA
     0.0032   18.0   0.8     0.0049   17.4   0.8    1.5  1  DUF1279    Protein of unknown function (DUF1279)


Domain annotation for each model (and alignments):
>> FLILHELTA  Hypothetical protein FLILHELTA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.7   4.5e-35     4e-31       1      87 [.      38     122 ..      38     123 .. 0.96

  Alignments for each domain:
  == domain 1  score: 107.2 bits;  conditional E-value: 4.5e-35
   FLILHELTA   1 rllkrlPkflrkytrklrsapvshvtsFLiLHElTAivPllglfalfhyldleedeellpaalv....seaveegverferylrkkgwfgf 87 
                 r++ rlP++l+kyt  lrsapvsh++sF+iLHElTAivPl++lfalfhy      ++++p a+v    + +v++g++rfe+y+++kgwfgf
  CCE29128.1  38 RITARLPRRLQKYTIGLRSAPVSHIVSFMILHELTAIVPLFVLFALFHY------TTFVPVAYVsehfGTYVQSGITRFEKYFSRKGWFGF 122
                 899**********************************************......78999988889999********************97 PP

>> DUF1279  Protein of unknown function (DUF1279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.8   5.5e-07    0.0049      52      91 ..     119     177 ..      63     178 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.5e-07
     DUF1279  52 v...................sskkvekksksswgefaiAYaihKilipiRlpiTlaitp 91 
                 +                   +s  +   +   + e+a+AYa++K+l+p+R++  +  tp
  CCE29128.1 119 WfgfrpedverdqadgvdvlESWDSGDHKYRILVEVALAYAVTKALLPVRIVYSVWATP 177
                 15555555555555555555444455555667889*****************9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1446.37
//
Query:       CCE29129.1  [L=279]
Description: probable nucleoside-diphosphate kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-46  157.9   0.0    1.7e-46  157.6   0.0    1.1  1  NDK       Nucleoside diphosphate kinase
  ------ inclusion threshold ------
        0.2   12.0   0.0       0.35   11.2   0.0    1.3  1  Dpoe2NT   DNA polymerases epsilon N terminal


Domain annotation for each model (and alignments):
>> NDK  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.6   0.0   1.9e-50   1.7e-46       1     134 [.     128     264 ..     128     265 .. 0.94

  Alignments for each domain:
  == domain 1  score: 157.6 bits;  conditional E-value: 1.9e-50
                 EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEECE-HHHHHHHTGGGTTST...THHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SSTTTSS CS
         NDK   1 ertlvliKPdavkrgligeiisrleekglkivalkmlrlteeqaeehYaehkgkp...ffeelvefmtsgpvvalvlegedaiekvreliGatnpaeaa 96 
                 e+t++ iKPd+v+rglig iisr+e++g+k+va+k++  +e+++++hY++   ++    f  ++++m++ p++a+v+eg+da+++ r+++Gat+p  +a
  CCE29129.1 128 EQTFIAIKPDGVQRGLIGPIISRFENRGFKLVAMKLVAPDEKHLRTHYSDLDTEKnakWFIPMIDYMKNQPMCAMVWEGRDAVKTGRAILGATDPLASA 226
                 89**********************************************765443323399*************************************** PP

                 TTSHHHHH-SSSTT-SEEE-SSHHHHHHHHHHHSTGGG CS
         NDK  97 pgtiRadfgvslgeNlvHgSdseesaereiklfFkeee 134
                 pgtiR+d++++ g+N++HgSds e+a++ei+l+F++++
  CCE29129.1 227 PGTIRGDYALDKGRNICHGSDSVENAQKEIALWFEKSQ 264
                 **********************************9976 PP

>> Dpoe2NT  DNA polymerases epsilon N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.9e-05      0.35      13      56 ..     156     199 ..     149     210 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.9e-05
     Dpoe2NT  13 FklrglllrseaskylaevllsldeeeledwlekiieavekQpL 56 
                 Fkl +++l +   k l+   ++ld e+  +w   +i+ ++ Qp+
  CCE29129.1 156 FKLVAMKLVAPDEKHLRTHYSDLDTEKNAKWFIPMIDYMKNQPM 199
                 9*****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1996.77
//
Query:       CCE29130.1  [L=977]
Description: related to glucosidase II, alpha subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.8e-139  465.1   7.1   3.9e-139  464.6   7.1    1.2  1  Glyco_hydro_31   Glycosyl hydrolases family 31
      3e-24   85.1   0.3    7.5e-23   80.6   0.1    2.6  2  Gal_mutarotas_2  Galactose mutarotase-like
    1.2e-05   25.5   0.5      4e-05   23.8   0.5    1.9  1  DUF5110          Domain of unknown function (DUF5110)


Domain annotation for each model (and alignments):
>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  464.6   7.1  6.6e-143  3.9e-139       1     439 [.     380     827 ..     380     828 .. 0.94

  Alignments for each domain:
  == domain 1  score: 464.6 bits;  conditional E-value: 6.6e-143
                     EEEE-SSHHHHHHHHHHHH-------GGGGSEEEE-TT--SHHHHHHHHHHHHHTT--EEEEEESCGGSBTTCCTB-.TTTSS-HHHHHHHHHHT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31   1 yvflGptpkevvkqyteltGrpalpPrwalGfhqsrygykdeeeveevvdkfreagiPldvivlDidymdkrkdftwdkerFpdpkemvdelhek 95 
                     +vf+Gptp++++k+y eltG++a+p+ +++G+hq+r++y ++++v++v +++++ +iP+dvi+lDi+y d++k+ftwd+++F dp  m ++l ++
      CCE29130.1 380 FVFMGPTPRDITKKYGELTGYTAMPQEFSVGYHQCRWNYISDDDVKDVDRRMDKYKIPYDVIWLDIEYTDEKKYFTWDPHSFADPVSMGEQLDAH 474
                     89******************************************************************************************999 PP

                     T-EEEEEE-SEE.E.-TTSHHHHHHHHTTSBECCCCCS.TCEC.TSSEEEEB-TTSHHHHHHHHHHHHHHHCT..CT--EEEE-STTTB.SCCCC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31  96 gvklvvivdpaiskqeeeyeafdegkekgvflknkdgs.ykgk.wpgstafpDftnpearewwkkelkkflld..lgvdglwiDmnepsnfeegs 186
                     g klvvi+dp+i+k + +y++ +++ +k++ ++nkd++ y+g  wpgs++++D +np+a+ewwk+ +k  +++  l+  +lw+Dmneps+f+ ++
      CCE29130.1 475 GRKLVVIIDPHIKKVD-GYSVSTDMHSKDLAVHNKDDEiYEGWcWPGSSNWIDCFNPKANEWWKTLFKYDFFKgtLQNTFLWNDMNEPSVFNGPE 568
                     ************8865.****************99999777779********************9999999977899************998777 PP

                     HH.HHCCCTSCETTCC..HHHHCCCHHHHHHHHHHHHHHHHTT..TST-EEEESSEETTGGGCTEEE--S-BSSHHHHHHHHHHHHHHHTTT--S CS
                     xx.xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 187 ds.eekeaketkaags..hydvhnlygllmakatyeglkekkp..kkrpfiltRstfaGsqryaahWsGdnassWeslresipallsfslsGvpf 276
                     ++ +    k++ + g   h+dvhnl gl+ ++a+ e++ ++++  k+rpfiltRs++aGsqr +a+W+Gdn++sW++l+ sip++l+ ++sG+pf
      CCE29130.1 569 TTmP----KDNLHYGGweHRDVHNLNGLTFHNASWEAMVSRQKgeKRRPFILTRSFYAGSQRLGAMWTGDNQASWDHLAASIPMVLNQGISGYPF 659
                     5544....33446666899****************88877776779************************************************* PP

                     EEEECT-SG.HCHHHHHHHHHHHHTTSSSEEE--STTSS--SHHHHCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH---SEE-HHHH-TT-CC CS
                     xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 277 wgaDigGFe.ntteelyaRWvqlGafsPffrnHsskdakrqepwafgeeveeaarkaielRyrLlPylYtlfyeahetglpvvrplflefpedek 370
                      gaD+gGF+ n++++l+aRW+q+G+f+Pf+r H++ d++r+ep+++ge+++e+++ka++lRy LlP +Yt+f++a+++g+pvvrp+++ +p++e+
      CCE29130.1 660 AGADVGGFFgNPEKDLMARWYQAGIFYPFMRAHAHIDSRRREPYMLGEPYTEILTKALRLRYALLPCWYTAFFHANRDGSPVVRPMLWTHPSEES 754
                     *********9************************************************************************************* PP

                     CCC--S-EEETTT.EEE----STT-SEEEEEE-.SSEEEETTT--EEES..SEEEEEE--TTSS-EEEETTEE CS
                     xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 371 tfdiddqfmfGds.LLvaPvleeeatsvevyLP.ggkWydfwtgekyeg..gqtveltapldeiplfvraGaI 439
                      f+iddq ++G s LL +P++e+++ s+e+++P ++ +yd+++ ++++   g++v+++a +d++pl++r+ +I
      CCE29130.1 755 GFAIDDQLFLGTSgLLAKPIVEKDKFSTEIWIPdEEVYYDYFSYKVLKTqrGKSVTVDAAIDSVPLLMRGRHI 827
                     ***********988*******99999*******877********9999964446789988999******9988 PP

>> Gal_mutarotas_2  Galactose mutarotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.1   1.3e-26   7.5e-23       2      66 .]     271     346 ..     270     346 .. 0.98
   2 ?    1.6   0.0     0.059   3.5e+02      22      60 ..     629     671 ..     608     673 .. 0.74

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 1.3e-26
                      -EEEEEES-SS-SS-TTE.........EEEE-----TS-HCC.CTS-SCEEEEEEEE..TCEEEEEE--SSSEEEE CS
  Gal_mutarotas_2   2 ehvyGlGEkagplnlrgt.........ryrlwntdafgyeaessdplYgsiPfmisl..segyGvfvdnpaetwfD 66 
                      e+v+G++E++gp++lr t         +yrl+ntd+f+y  +s++ lYg+iP+m ++  ++++Gvf++n+aetw+D
       CCE29130.1 271 EQVFGIPEHTGPISLRQTrggdgnhnePYRLYNTDVFEYVLDSPMTLYGAIPLMQAHrkDSSVGVFWLNAAETWID 346
                      89*********************************************************777*************9 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.059
                      EE-----TS-HCC.CTS-SCEEEEEEEE........TCEEEEEE--S CS
  Gal_mutarotas_2  22 rlwntdafgyeaessdplYgsiPfmisl........segyGvfvdnp 60 
                       +w+ d+ +    s d l  siP+++          ++ +G f+ np
       CCE29130.1 629 AMWTGDNQA----SWDHLAASIPMVLNQgisgypfaGADVGGFFGNP 671
                      578888875....4559*********988888888877788888887 PP

>> DUF5110  Domain of unknown function (DUF5110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.5   6.6e-09     4e-05       4      40 ..     848     886 ..     845     904 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 6.6e-09
                 EEEE..--TTSEEEEEEE-SSSSCCCCTBEEEEEEEEEC CS
     DUF5110   4 ldvy..gggegsftlYeDDGetydYekGeyaktkftvea 40 
                 l v    +g+++ +lY DDG+t+++e+G+y   +f+ + 
  CCE29130.1 848 LVVAlsRDGSAEGDLYADDGDTFEHEEGQYIYRRFHLQG 886
                 55555556788899*********************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 6907.00
//
Query:       CCE29131.1  [L=894]
Description: uncharacterized protein CPUR_02822 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-18   65.9   3.5    6.1e-18   65.1   3.5    1.3  1  MS_channel   Mechanosensitive ion channel
     0.0003   20.1   0.7    0.00073   18.9   0.7    1.7  1  EF-hand_1    EF hand
     0.0071   16.2   0.1      0.018   14.9   0.1    1.7  1  EF-hand_6    EF-hand domain
  ------ inclusion threshold ------
      0.013   14.9   0.3       0.03   13.8   0.3    1.6  1  EF-hand_5    EF hand
      0.015   15.8   0.1      0.039   14.4   0.1    1.7  1  EF-hand_7    EF-hand domain pair
       0.22   11.4   0.6       0.67    9.8   0.4    1.8  2  EF-hand_8    EF-hand domain pair


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   3.5     2e-21   6.1e-18       2     184 ..     508     704 ..     507     719 .. 0.89

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 2e-21
                 .HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-.SS-TT-EEESS........SEEEEEEEE-SSEEEEEETTS CS
  MS_channel   2 kilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfek.pfkiGDlveig........dieGtVediglrttkirtfdg 91 
                 k++ ++i+++ i+++   +  +++  l+++ +  l+l+ +l+ + ++++ +ii++f k pf++GD+v+i         + +++V++i+l+ t +++ +g
  CCE29131.1 508 KVFVLIIFIISIIVFVAIFSTSTAQGLTSASTSVLGLAWVLQATAQEFLQSIIFVFVKhPFDVGDRVTIYgstgatmtGDDYYVTEISLLYTEFKKLQG 606
                 6777888999999999999999*******************************999888***********9****9999999***************** PP

                 EEEEEEHHHHHTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET.........TTH CS
  MS_channel  92 rivtiPnsslvtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvkt......vvpeey 184
                  iv  Pns l t  i N +r s++ ++++  +++++++   +e++  +++e+++ ++++ +      + +  + +s ++ + ++ kt       +++++
  CCE29131.1 607 HIVQAPNSLLNTLFILNQRR-SNGISDVIPLEFKFGTPAWMIEELKARMLEFCLANKRDYQPTIIAEMTGVEQVRSCTMNIIFIHKTnfqnelLRLNRH 704
                 ********************.***************************************999999999999999999999999999444444444444 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.7   2.4e-07   0.00073       1      27 [.     457     483 ..     457     485 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e++ +F +fDkD +G I++eEf ++++
  CCE29131.1 457 EIDAAFGVFDKDLNGDISIEEFEAVCN 483
                 79********************99876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1     6e-06     0.018       1      27 [.     457     483 ..     457     489 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6e-06
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 e+++aF  fDkd +G i++eE+ ++++
  CCE29131.1 457 EIDAAFGVFDKDLNGDISIEEFEAVCN 483
                 6889******************99876 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3     1e-05      0.03       1      24 [.     458     481 ..     458     482 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 ++++F  +D++  G Is+eE++++
  CCE29131.1 458 IDAAFGVFDKDLNGDISIEEFEAV 481
                 5789*****************975 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.3e-05     0.039      42      70 ..     454     482 ..     413     483 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
   EF-hand_7  42 sdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++ee+++ f  fD+d +G is +EF++ +
  CCE29131.1 454 TKEEIDAAFGVFDKDLNGDISIEEFEAVC 482
                 679**********************9875 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4   0.00023      0.67      24      48 ..     454     478 ..     449     481 .. 0.96
   2 ?   -2.3   0.0       1.4   4.2e+03       7      34 ..     531     562 ..     530     563 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00023
   EF-hand_8  24 seeevdilfrefDtdgdGkisfeEF 48 
                 ++ee+d+ f  fD d +G is eEF
  CCE29131.1 454 TKEEIDAAFGVFDKDLNGDISIEEF 478
                 689*********************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
   EF-hand_8   7 reelrril.rilglkk..glseee.vdilfre 34 
                  + l +++ ++lgl+   + +++e +++++  
  CCE29131.1 531 AQGLTSAStSVLGLAWvlQATAQEfLQSIIFV 562
                 67799999999988777778888877877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       946  (0.0527637); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 6128.56
//
Query:       CCE29132.1  [L=1271]
Description: related to DNA damage checkpoint protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-08   32.5   0.0    1.8e-07   31.5   0.0    1.6  1  BRCT           BRCA1 C Terminus (BRCT) domain
     0.0039   17.1   0.0     0.0091   15.9   0.0    1.6  1  RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRC
     0.0091   16.4   0.0       0.02   15.3   0.0    1.6  1  BRCT_2         BRCT domain, a BRCA1 C-terminus domain


Domain annotation for each model (and alignments):
>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   2.9e-11   1.8e-07       3      79 .]    1021    1126 ..    1019    1126 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2.9e-11
                  TTTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEE...............................ESSCSTTSSEEEESSSHSHHHHHHHHHHTTSE CS
        BRCT    3 ellfhgckfvitgvldnftrdeleelikehGGkv...............................ttevskktthlvvgepesrslkylealklnip 68  
                    lf+g++f++ +  dn +r++le ++   G+++                                  +      +++++  sr+ ky++al+l+ p
  CCE29132.1 1021 RRLFEGMIFAL-SFSDNPQRTKLEAKMTQAGATIihegfqelfepspvlhsnsaleeshdcltlaRANLEYGFAAVIADSH-SRKAKYMQALALGLP 1115
                  579********.**************************************9777777777777777777777777777666.*************** PP

                  EEETHHHHHHH CS
        BRCT   69 ivheewlldci 79  
                  ++ ++w + c+
  CCE29132.1 1116 CLAPQWAYTCL 1126
                  ******88886 PP

>> RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.5e-06    0.0091      55     100 .]    1094    1139 ..    1084    1139 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-06
                     EEE-SS---SHHHHHHCCCTTEEE-CHHHHHHHHHTS---SGGGB- CS
  RTT107_BRCT_5   55 tliApkilRTeKFLksLskapkilspdfiedvLkkkklldleeyll 100 
                      +iA++  R +K++++L+ +   l p++  ++Lkk +++d  +yll
     CCE29132.1 1094 AVIADSHSRKAKYMQALALGLPCLAPQWAYTCLKKAEIVDWTPYLL 1139
                     689*************************************999986 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.4e-06      0.02       2      85 .]    1021    1138 ..    1020    1138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.4e-06
      BRCT_2    2 sklFeglrFYindaepspsreklkklIeknGGevveti...............................tsavyiviaesneee....laekrkrrv 63  
                  + lFeg+ F + +  ++p+r kl+++ ++ G ++ ++                                +     via s++ +    +a   +++ 
  CCE29132.1 1021 RRLFEGMIFAL-SFSDNPQRTKLEAKMTQAGATIIHEGfqelfepspvlhsnsaleeshdcltlaranlEYGFAAVIADSHSRKakymQALALGLPC 1116
                  679********.444559****************888888899988899998899877777777766552224445555555559999999****** PP

      BRCT_2   64 vspkyIkdCikkgkllplenyl 85  
                  + p++ + C+kk ++++  +yl
  CCE29132.1 1117 LAPQWAYTCLKKAEIVDWTPYL 1138
                  *******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1683  (0.0938703); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                       137  (0.00764125); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.54u 0.34s 00:00:01.88 Elapsed: 00:00:00.51
# Mc/sec: 7512.29
//
Query:       CCE29133.1  [L=274]
Description: uncharacterized protein CPUR_02824 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.082   13.0   0.0       0.16   12.1   0.0    1.4  1  BACK      BTB And C-terminal Kelch
      0.088   13.0   0.0       0.65   10.2   0.0    2.2  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BACK  BTB And C-terminal Kelch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.8e-05      0.16       4      54 ..     177     227 ..     175     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.8e-05
        BACK   4 ilefAeaysceeLaeaakefilknfeevlkseeFleLskeqllellssdeL 54 
                 ++ fA+ y++++L+  +  ++++ +++vl+s++  ++ +e l+ + ++d  
  CCE29133.1 177 LYVFADCYGITQLMRLSLCTLHHVLMKVLESNDLTDMIVELLEYCYENDTP 227
                 688**********************************99999988887765 PP

>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.3e-05      0.65      20      78 ..      33      90 ..      24     103 .. 0.86
   2 ?   -0.5   0.0      0.15   1.4e+03      65      77 ..     215     227 ..     202     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.3e-05
                TEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC CS
         BTB 20 gkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtgelei 78
                +k +  h   +a  Sp++++l++++ +ee+++  +e + v+ ++f ++ +++Y ++ e 
  CCE29133.1 33 KKVYTIHSGLVARLSPVLDRLVNGD-MEEAKKGSVEWKHVDEQTFIRFSQYAYMKTYEY 90
                56677888899999***********.88888889*******************988765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.15
                 HHHHHHHHHSEEE CS
         BTB  65 ealLefiYtgele 77 
                  +lLe++Y   ++
  CCE29133.1 215 VELLEYCYENDTP 227
                 5799999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2165.86
//
Query:       CCE29134.1  [L=304]
Description: uncharacterized protein CPUR_02825 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.031   14.5   0.0        0.1   12.8   0.0    1.8  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.8e-06       0.1      20      79 ..      31      89 ..      23     104 .. 0.84
   2 ?   -2.1   0.0      0.25   4.5e+03      65      76 ..     245     256 ..     233     267 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.8e-06
                TEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC- CS
         BTB 20 gkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtgeleit 79
                ++ f  h a +a+ Sp++++l++++ + e+++  +  + v+ ++f ++ +++Y ++ e +
  CCE29134.1 31 KRVFTIHSALVASLSPVLERLVNGD-MLEAKTGSVVWEHVDEQTFVRFSQYAYMKTYEYP 89
                67899********************.66666667889****************9987765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.25
                 HHHHHHHHHSEE CS
         BTB  65 ealLefiYtgel 76 
                  +lL+++Y   +
  CCE29134.1 245 VKLLQYCYEIDT 256
                 479999997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2449.83
//
Query:       CCE29135.1  [L=290]
Description: uncharacterized protein CPUR_02826 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.003   17.2   5.0      0.003   17.2   5.0    2.0  2  zf-C2H2_10  C2H2 zinc-finger
  ------ inclusion threshold ------
      0.097   12.7   0.0       0.19   11.8   0.0    1.4  1  AlphaC_N    Alpha C protein N terminal


Domain annotation for each model (and alignments):
>> zf-C2H2_10  C2H2 zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.7   4.1         2   1.8e+04      15      22 ..     259     266 ..     259     266 .. 0.79
   2 !   17.2   5.0   3.4e-07     0.003       6      22 ..     274     290 .]     271     290 .] 0.95

  Alignments for each domain:
  == domain 1  score: -6.7 bits;  conditional E-value: 2
  zf-C2H2_10  15 tRAkCekR 22 
                 +R +C++R
  CCE29135.1 259 SRRRCRTR 266
                 57799988 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 3.4e-07
  zf-C2H2_10   6 CSYChetGHtRAkCekR 22 
                 CS C  +GHtR  C++R
  CCE29135.1 274 CSICEGPGHTRGACQRR 290
                 ***************98 PP

>> AlphaC_N  Alpha C protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.1e-05      0.19      21      50 ..      95     124 ..      85     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.1e-05
    AlphaC_N  21 grayidlydvklgkidplqliklespdlka 50 
                 g a  d+ dv+ gk++p +li+l sp +++
  CCE29135.1  95 GVAREDMDDVRTGKMEPWNLIRLCSPIITT 124
                 678889*******************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2334.50
//
Query:       CCE29136.1  [L=251]
Description: uncharacterized protein CPUR_02827 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.6   0.1       0.14   12.4   0.0    2.3  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.7e-06      0.14      20      78 ..      31      88 ..      17      97 .. 0.85
   2 ?    0.2   0.0     0.047   8.4e+02      64      79 ..     187     202 ..     178     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.7e-06
                TEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC CS
         BTB 20 gkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtgelei 78
                +k f  h   +a+ Sp++++l++++  +e+++  +  + v+ ++f ++ +++Yt+  + 
  CCE29136.1 31 KKPFIIHSELVASLSPVLQRLVKGG-LKEAQKGSVVWEHVDEQTFIRFSQYAYTDAKTQ 88
                6889999******************.67777778999*****************97655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.047
                 HHHHHHHHHHSEEEC- CS
         BTB  64 fealLefiYtgeleit 79 
                 + +lL+++Y   ++  
  CCE29136.1 187 LIQLLRYCYENDTPAV 202
                 6689*****9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1828.81
//
Query:       CCE29137.1  [L=338]
Description: uncharacterized protein CPUR_02828 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-23   81.9  13.5    1.8e-17   63.7   0.6    2.5  3  PAP2_3    PAP2 superfamily


Domain annotation for each model (and alignments):
>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2      0.34   6.1e+03      25      48 ..     120     143 ..     110     152 .. 0.49
   2 !   27.0   1.6   1.7e-10   3.1e-06       2      56 ..     161     215 ..     160     229 .. 0.90
   3 !   63.7   0.6     1e-21   1.8e-17      53     145 ..     232     329 ..     220     337 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.34
      PAP2_3  25 hpalavilalaYaslhfqvtllvl 48 
                  p l  +  +a  ++++q+  +++
  CCE29137.1 120 FPFLVEAWYWALIYWLYQIGRALT 143
                 444444444444444444444443 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 1.7e-10
      PAP2_3   2 elialdralgldweaalnklllahpalavilalaYaslhfqvtllvlvllflrrr 56 
                 ++i+l+++l + we  ++kl+l+ p ++++++  Y+++h++ t+l+lv l++ ++
  CCE29137.1 161 DVIRLEQRLLIFWEIPIQKLFLQYPTVMHWINRLYSFIHIPGTILFLVALYFLTT 215
                 589**********************************************996544 PP

  == domain 3  score: 63.7 bits;  conditional E-value: 1e-21
      PAP2_3  53 lrrrerlreflttlllatllgllvyalfPaagPrll.....eeagfvdtvaaaslag...alrdgasravllrgtienglaafPSlHvawallvalalw 143
                 +  ++ + + ++t+++++l++++v++l+P+++Prll     e    +++ +a s ++     +++ ++ v++ + + n++aa+PSlH++++ll++l+++
  CCE29137.1 232 STGPALYEARRRTMAVCNLIAFFVFTLWPCMPPRLLsnpeyE---GKSATEAKSFEFvdtVHSADGASSVWTMNRFCNQYAAMPSLHFGYSLLIGLTIA 327
                 566889999***************************885441...3333333333335565666666799999***********************987 PP

      PAP2_3 144 rl 145
                 ++
  CCE29137.1 328 TF 329
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2373.46
//
Query:       CCE29138.1  [L=815]
Description: probable GTPase activating protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-36  126.4   2.2    2.9e-36  125.1   2.2    1.7  1  RabGAP-TBC     Rab-GTPase-TBC domain
    3.6e-05   23.3   0.0    0.00029   20.3   0.0    2.4  2  PH_RBD         Rab-binding domain (RBD)
  ------ inclusion threshold ------
      0.018   14.6   0.1      0.034   13.7   0.1    1.4  1  Peptidase_M60  Peptidase M60, enhancin and enhancin-like


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   2.2   4.9e-40   2.9e-36       3     215 .]     441     686 ..     439     686 .. 0.86

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 4.9e-40
  RabGAP-TBC   3 lRgevWklllgyep.............evkrlkksekkqeksekeksklekse...eskelsqIkkDvprtfp...........es......esfknkq 68 
                 +R+e+W +llg+++             + ++++++ k+++ +  e ++ e+++    +++  +I+kDv+rt +           +       +   ++ 
  CCE29138.1 441 VRKEAWLFLLGVYEwygtrderkaqiaSLRDQYYRLKQSWWERLEGDGGEDETgewWREQKARIEKDVHRTDRhvgifrgedtpHPdpsspfADVGTNV 539
                 8*************************9666666666666666666555444441115556778**********99999987766226666766666779 PP

  RabGAP-TBC  69 gqnqLeriLkaysiynpevgYcqGmndivaplllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfa 167
                   +q++  L++y+ yn+++gY+qGm+d+++p+++v++d   aFw f +++  ++++ ++  +++g++++l +l++l++  dpkl++hl   + ++ +f 
  CCE29138.1 540 HLEQMKEMLLTYNEYNKDLGYVQGMSDLLSPIYAVVQDDAIAFWGFQKFM--ERMERNFLRDQSGMRNQLLTLDHLVNFMDPKLWEHLRATDSTNFFFF 636
                 9*************************************************..9********************************************** PP

  RabGAP-TBC 168 ikwfltlflrefpletvlrlwD.lll.ege..kfvllrvalailklleeell 215
                 ++ +l +++ref +  +lrlw+ l+  +    +f +l+valail+++++ ++
  CCE29138.1 637 FRMILVWYKREFEWADILRLWEgLWTdF-LssEF-HLFVALAILEKHRDVIM 686
                 **********************666642.25356.************99886 PP

>> PH_RBD  Rab-binding domain (RBD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   4.9e-08   0.00029       1     125 [.      49     199 ..      49     212 .. 0.78
   2 ?   -4.1   0.0       1.6   9.6e+03     127     152 ..     229     254 ..     227     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.9e-08
      PH_RBD   1 rllfeKnnVflets.dqdslikGvislvekksdvilkWiPnqlmkkkdqpssasskseelfdpdyepdwavistv........................ 74 
                 +llf+K  V++++  +  + + G+i l ++k        P+    +++ +s ass+      p+     a+   v                        
  CCE29138.1  49 KLLFSKSKVYVHPTpSSRDNVPGYIALLQQKHAT-TSARPTSSSSQDS-SSPASSDLLLAWIPETALGDAADIYVkvdlcggdsppkqtylvpppptvt 145
                 69**********98688899********996543.3456665444433.444555544444555554444444448899*******************9 PP

      PH_RBD  75 .esddrskwaitvslkelksirkskpgless..ylilvtkdGvslpplhFeqGg 125
                  +s++ + + + v ++ + s+    p  ++    +i+ +++G s+p+l+F+  +
  CCE29138.1 146 sHSGSVGGYSFAVPISAIFSLLVRPPSPGWWygSIIINSRAGDSFPALFFHDDE 199
                 999*****************98888888876448*****************866 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.6
      PH_RBD 127 rallkalskylllalspldsrlllvv 152
                  ++l+ +++y+ +  s  +  ++l+ 
  CCE29138.1 229 EEVLRWVKRYVKVERSRAEPTIYLIE 254
                 68899999999999999988888765 PP

>> Peptidase_M60  Peptidase M60, enhancin and enhancin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   5.8e-06     0.034      15      75 ..     647     706 ..     639     733 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.8e-06
  Peptidase_M60  15 eeeWketlenskapvaelvgkrviltvpteslkklsevdveellklydrvvelvnevagld 75 
                    e eW + l+  ++ ++++ ++ ++l v+ + l k+++v  +e lk +d+v++ vne+++ +
     CCE29138.1 647 EFEWADILRLWEGLWTDFLSSEFHLFVALAILEKHRDV-IMEHLKAFDEVLKYVNELSNTT 706
                    569**********************************8.******************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 5671.27
//
Query:       CCE29139.1  [L=265]
Description: uncharacterized protein CPUR_02830 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-20   70.6   0.4    8.6e-20   70.1   0.4    1.3  1  Mso1_Sec1_bdg  Sec1-binding region of Mso1


Domain annotation for each model (and alignments):
>> Mso1_Sec1_bdg  Sec1-binding region of Mso1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.4   4.8e-24   8.6e-20       1      40 []      18      57 ..      18      57 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 4.8e-24
  Mso1_Sec1_bdg  1 slsnlslssEkDGdteddTlvhraLvkYYdekgqpfPdWL 40
                   sl++++lss++DGdt+ddT+v+r+L++YY++kg+ fP WL
     CCE29139.1 18 SLRSTLLSSDQDGDTDDDTHVCRVLRNYYTDKGRAFPTWL 57
                   799************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2101.49
//
Query:       CCE29140.1  [L=314]
Description: probable MAK16 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-40  136.7   3.5    5.4e-40  136.7   3.5    1.7  2  Ribosomal_L28e  Ribosomal L28e protein family
    5.7e-28   97.5  14.8    5.7e-28   97.5  14.8    2.5  2  Mak16           Mak16 protein C-terminal region
     0.0026   17.2  19.3     0.0034   16.8  19.3    1.1  1  BUD22           BUD22
  ------ inclusion threshold ------
       0.12   12.5   2.7       0.31   11.2   2.7    1.6  1  DUF305          Domain of unknown function (DUF305)
       0.16   11.7   5.6        0.4   10.4   4.4    2.3  2  PYC_OADA        Conserved carboxylase domain
       0.68    8.4  24.7       0.87    8.1  24.7    1.3  1  TFIIF_alpha     Transcription initiation factor IIF, alpha su
        3.4    7.8   7.1        7.3    6.8   7.1    1.6  1  DUF2407_C       DUF2407 C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L28e  Ribosomal L28e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   3.5   2.1e-43   5.4e-40       1     114 [.       6     120 ..       6     121 .. 0.94
   2 ?   -3.7   0.2         7   1.8e+04      91      91 ..     287     287 ..     272     302 .. 0.41

  Alignments for each domain:
  == domain 1  score: 136.7 bits;  conditional E-value: 2.1e-43
  Ribosomal_L28e   1 LiWelvrnnn..sFlvktrtsnkqtFsrepyNltglhsrkysglanskavtVr..eekkgvvlvtkkkerahkpakawekvklsknsrkalkqia 91 
                     +iW+++ n++  s++ kt+  ++q+F+r++yN+tgl++r++++lans+++tVr  ++k++++l++k++erah p+k+wek+kls+n++kal+qi+
      CCE29140.1   6 IIWQII-NQQfcSYKLKTE--KQQNFCRNEYNVTGLCNRQSCPLANSRYATVRqhPTKQTLYLYMKTVERAHLPSKMWEKIKLSNNYTKALEQID 97 
                     69****.88889*****54..589*****************************666699************************************ PP

  Ribosomal_L28e  92 kllkky.rpdlrkaalaRlskitq 114
                     ++l  y +++l++++++Rl+++tq
      CCE29140.1  98 ERLI-YwPKFLTHKCKQRLTRLTQ 120
                     ***9.55***************98 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7
  Ribosomal_L28e  91 a 91 
                     +
      CCE29140.1 287 K 287
                     1 PP

>> Mak16  Mak16 protein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5  14.8   2.2e-31   5.7e-28       2     100 .]     145     251 ..     144     251 .. 0.84
   2 ?    1.8   7.7      0.15   3.8e+02      61      83 ..     256     283 ..     252     303 .. 0.40

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 2.2e-31
       Mak16   2 kKverRekrReeKAlaAAklekaIekeLleRLksgaYgd.iynveekafkkvlekee.e....eeeeeeeeeeeeeeeeeeeeeegeveyvedee..ee 92 
                 +K+++Rek+Re+KA+aAAkle++Ie+eL+eRL++gaYgd ++nv+e ++kkvl+++e e    e+e+ +e    ++ee  e+++e+ev+yv+d e  +e
  CCE29140.1 145 PKIKHREKTRERKAEAAAKLERTIERELVERLRQGAYGDqPLNVSEAIWKKVLNAMErEgecaEDEDMDEGVLSDDEELAESDDEKEVQYVSDIEeeSE 243
                 8*****************************************************99963567655555555555555666777889******8743588 PP

       Mak16  93 eeledled 100
                  eledled
  CCE29140.1 244 AELEDLED 251
                 99999998 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.15
       Mak16  61 eeeeeeeeeeeeeeeeeeee.....gev 83 
                 e+e eee+ee+ee e+e+++     ++ 
  CCE29140.1 256 ENEAEEEDEEDEEMEDEKKTvgskrKRA 283
                 2233333333333333333244332223 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8  19.3   1.3e-06    0.0034      60     261 ..      73     286 ..      53     309 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-06
       BUD22  60 kilaskllktkklaeseelpealksikdkkpksnpeekneelektkalenvtsrLlnsktvkevveeivesvkkllgiek......kkkkkeeekkkkk 152
                 ++l sk+ ++  ++ s+++ +al++  d+   + p+           +++ ++rL+  ++v+ ++ +i ++ +++lg +       k k +e+ +++k+
  CCE29140.1  73 AHLPSKMWEK--IKLSNNYTKALEQ-IDERLIYWPK---------FLTHKCKQRLTRLTQVQIRMRRIAAE-EERLGEKLvpklapKIKHREKTRERKA 158
                 4555555544..3333334444444.3333333333.........35799999999999999999998775.455554445444544444444444444 PP

       BUD22 153 kkkkkkkkkeeee..........................eeesdkeeesedsedeekeeseddeeeeeededdedaeedeedeeaeerelaqydgllas 225
                 ++++k +++ e e                          +  +++ e +ed+++  +e   +d+ee +e++d+++ +  ++ ee++e el+++++ l+s
  CCE29140.1 159 EAAAKLERTIERElverlrqgaygdqplnvseaiwkkvlNAMEREGECAEDEDM--DEGVLSDDEELAESDDEKEVQYVSDIEEESEAELEDLEDWLES 255
                 444444444444488999999999999999998887554222222222333332..3444444444444444444555778889999999999998887 PP

       BUD22 226 ddededeyneetdeesseesdssdssesaseseses 261
                 ++e e+     +dee++e +d++++  s+ ++ +  
  CCE29140.1 256 ENEAEE-----EDEEDEEMEDEKKTVGSKRKRAQVL 286
                 777777.....3333333333333333322222111 PP

>> DUF305  Domain of unknown function (DUF305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.7   0.00012      0.31      28      93 ..     228     295 ..     220     305 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---........-----HHHHHH..TT---HHHHHHHHH CS
      DUF305  28 dpevralAqdIaaaQqaeiaemqgwleawgqpassagegeaaeaseaeeaam..pgmaseaelaalra 93 
                 d++  +  +dI+++ +ae++ ++ wle+ ++++++++e e++e++++   +      + + + ++lr+
  CCE29140.1 228 DEKEVQYVSDIEEESEAELEDLEDWLESENEAEEEDEEDEEMEDEKKTVGSKrkRAQVLKRDTKKLRE 295
                 3444456789*********************9999983333333333322220022233344444444 PP

>> PYC_OADA  Conserved carboxylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.4   0.00016       0.4      84     109 ..     173     226 ..     151     287 .. 0.63
   2 ?   -2.3   0.0       1.2   3.2e+03      66      94 ..     280     307 ..     274     310 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00016
                 HHHHHTTSS---SS---HHHHHHHH............................T CS
    PYC_OADA  84 vvdllkGelGkppggfpeelvkkvl............................k 109
                 v +l +G +G  p ++ e+++kkvl                             
  CCE29140.1 173 VERLRQGAYGDQPLNVSEAIWKKVLnameregecaededmdegvlsddeelaeS 226
                 556789*******************33333322222222222222222222220 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
                 .......TS.TTSS--HHHHHHHTTSS-- CS
    PYC_OADA  66 lteedvleegrykdipdsvvdllkGelGk 94 
                  ++++vl++ ++k++ ++ +++++G+ Gk
  CCE29140.1 280 RKRAQVLKR-DTKKLREAEKEVVRGDKGK 307
                 456777776.8888888888888888776 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  24.7   0.00034      0.87     263     352 ..     207     298 ..     109     309 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00034
                  XXXXXXXX.......XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.. CS
  TFIIF_alpha 263 gsdddade....y..dsddGddegrEldyisD.dsasendpeeredkkseEeeekkeieqdedeeekeeekkeeegklskkkkkakklkkkkkekdk 352
                   +d+d+de    +  +  +  d ++E+ y+sD +++se + e+ ed ++ E+e+ +e   de++ee e+ekk  ++   k+ + +k++ kk +e +k
   CCE29140.1 207 AEDEDMDEgvlsDdeELAES-DDEKEVQYVSDiEEESEAELEDLEDWLESENEAEEE---DEEDEEMEDEKKTVGS-KRKRAQVLKRDTKKLREAEK 298
                  22333222100010022233.4589*******5567778889999999888888777...5566777777765554.34444555555555555533 PP

>> DUF2407_C  DUF2407 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.1    0.0028       7.3      34      80 ..     232     283 ..     208     303 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0028
   DUF2407_C  34 dtmpsdleeeeeeelreLEerWidstanaeeaaeaeeegeaakeee......n 80 
                  +  sd+eee+e+el +LE+ W++s+++aee++e++ee e++k++       +
  CCE29140.1 232 VQYVSDIEEESEAELEDLED-WLESENEAEEEDEEDEEMEDEKKTVgskrkrA 283
                 3455799***********98.******76666654433333333323333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2473  (0.137933); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 2125.23
//
Query:       CCE29141.1  [L=129]
Description: probable VPS55-involved in late endosome to vacuole trafficking [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-44  149.9   8.7    2.9e-44  149.8   8.7    1.0  1  Vps55     Vacuolar protein sorting 55


Domain annotation for each model (and alignments):
>> Vps55  Vacuolar protein sorting 55
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   8.7   1.6e-48   2.9e-44       1     116 [.       9     126 ..       9     127 .. 0.96

  Alignments for each domain:
  == domain 1  score: 149.8 bits;  conditional E-value: 1.6e-48
       Vps55   1 iillsfvlaiGfllvilsCalyknwwpLlvvlfyllaplPnliakrlsssed..seessalkdlakFltgvlvvsgiaLpivLahagiikwgalilsla 97 
                 ii+lsfvla+GfllvilsCal+++++pLlvv +y++ap+Pn+i++r+++ +d  ++++ a+ dl++F+tg+lvv+giaLp+vLah++ii+ +a+i+s++
  CCE29141.1   9 IIALSFVLAVGFLLVILSCALFSSYFPLLVVGTYVIAPIPNWICSRCANPDDfvESSGAAVLDLGRFFTGFLVVMGIALPVVLAHSDIIRVEAMIMSIV 107
                 8*********************************************997765653789***************************************** PP

       Vps55  98 ggvviyltiivfflffkee 116
                 gg++iy+tii+f +ff+ee
  CCE29141.1 108 GGFLIYGTIISFGMFFQEE 126
                 ****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1005  (0.0560544); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 983.27
//
Query:       CCE29142.1  [L=113]
Description: uncharacterized protein CPUR_02833 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 922.92
//
Query:       CCE29143.1  [L=151]
Description: uncharacterized protein CPUR_02834 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1295.15
//
Query:       CCE29144.1  [L=973]
Description: related to para-aminobenzoic acid synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-65  220.4   1.0    8.4e-33  114.0   0.0    3.3  3  Chorismate_bind  chorismate binding enzyme
    2.7e-21   76.2   0.0    9.2e-14   51.6   0.0    2.2  2  GATase           Glutamine amidotransferase class-I
      7e-08   32.8   0.0    4.8e-07   30.1   0.0    2.4  2  Anth_synt_I_N    Anthranilate synthase component I, N termina
    2.1e-05   24.4   0.2     0.0071   16.1   0.0    2.3  2  Peptidase_C26    Peptidase C26


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   1.1e-07   0.00047       3      71 ..     610     684 ..     608     687 .. 0.80
   2 !  114.0   0.0   1.9e-36   8.4e-33      35     167 ..     691     822 ..     684     843 .. 0.88
   3 !   83.9   0.1   2.8e-27   1.3e-23     168     258 .]     850     961 ..     840     961 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.1e-07
                      CHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEE....EETT....EEEEEEES CS
  Chorismate_bind   3 edYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysfll....eled....sellgaSP 71 
                       +Y++ v++++e+ir+gd+y+++l+ +++++ ++  d+ ++ r+ ++++++ +++      +  d    ++ lgaSP
       CCE29144.1 610 SSYEADVRTCQEYIRRGDTYELCLTAQTTMTRPRGQDQPHHTRSSTTTTTTTTTTSTtpssQ--DhpphRKHLGASP 684
                      68*****************************9999998888888888877777766645430..1455567799998 PP

  == domain 2  score: 114.0 bits;  conditional E-value: 1.9e-36
                      SS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECEEEEEEHSSSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH CS
  Chorismate_bind  35 eaavdplalyralrarnpapysflleledsellgaSPElllkveggrrietepiaGTrargktpeedealeeelledeKeraEhlmivdlirnd 128
                      +++ +p+++yralr+r+pap+  + +l++ +l+++SPE++l+ ++++ + ++p++GT +++ t     a++e++l+ +Ke aE+lmivdl+r+d
       CCE29144.1 691 PHHGTPWQIYRALRTRQPAPFGSFTRLSGATLISCSPERFLSHDRHGLCAMRPMKGTVRKSPTC-STLAQAEKVLHVPKEEAENLMIVDLVRHD 783
                      46788***************************************999**********9665555.6888889********************** PP

                      HHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT- CS
  Chorismate_bind 129 Lgkvakpgsvkvpelfkverysevlhlvstiegelkedv 167
                      L  v+ ++sv+vp+l +ve+y++v+++v+ ++g+l+ ++
       CCE29144.1 784 LYGVCGAQSVSVPQLLHVEEYATVFQMVTAVQGQLPMQK 822
                      ***********************************8442 PP

  == domain 3  score: 83.9 bits;  conditional E-value: 2.8e-27
                      -HHHHHHHCSS-CCCSEESHHHHHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEE.ET....................TEEEEEEEE CS
  Chorismate_bind 168 slldllkalfPtgavtGaPkkrameiidelEearRgvYaGavgyldadgeaelavvIRtavv.kd....................kelrlgaGa 240
                      + +++l++++P+g++tGaPkkr++ei++ +E+ +R +Y+G+vgyld++g+++++v+IRt+++ +d                    + +r+gaG+
       CCE29144.1 850 TGMHVLASCLPPGSMTGAPKKRSCEILQTIEPGERSIYSGVVGYLDVQGQGDWSVTIRTMFRwDDercagedgegegdgerererEVWRIGAGG 943
                      5689**********************************************************76689*****************989******* PP

                      EEETT--HHHHHHHHHHH CS
  Chorismate_bind 241 GIvadSdpeaEyeEtlaK 258
                      +++  S+   E eE+ +K
       CCE29144.1 944 AVTTLSTEVGEREEMFTK 961
                      ***************988 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0     2e-17   9.2e-14       2     133 ..      35     189 ..      34     201 .. 0.80
   2 !   22.2   0.0   2.2e-08   9.8e-05     145     178 ..     237     270 ..     223     283 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 2e-17
                 EEESSTSTHHHHHHHHHH.TT..-EEEEEETTSHHHHH..............HHTHHSTSEEEEEEESSCTT....TTTHHHHHHHHCTSTS-EEEETH CS
      GATase   2 liDnydsvtenlvhalve.lg..vkvevvpidasaeei..............lellknpdgilvsgGpgspg....vegkieaikearenkiPiLGICL 79 
                 ++D+yds+t+n+v  l   lg  v+v+v+ +d    +               +  l ++d+++  +Gpgsp     v+    + +   e+ +P+LGICL
  CCE29144.1  35 FLDAYDSFTNNVVSLLKDaLGskVRVHVLHMDL--RTLdddpspdwtpeqflR-RLPDFDAVVCGPGPGSPLhdadVGAFKLLWQLPHEQSVPVLGICL 130
                 68**********999986245335555555554..444558999988754421.599***************77766666666666677********** PP

                 HHHHHHHHTTTEEEEEECEEEEEEEEEEEETTT.....CGGTTTTSEEEEEEEEEEEEE CS
      GATase  80 GmQllaiefgrkvvkekekehhggtmrlgddet.....allyglknevierhrHryevn 133
                 G+Q l++ fg+ + + ++ + hg    +++ +      a + ++  +++++ +H+++++
  CCE29144.1 131 GFQSLVEHFGGGICRLQRGGLHGMVRTIDHVQPhrpseADIFDSVAPFKATLYHSLCAD 189
                 *****************9*******9999976699999667777799********9987 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2.2e-08
                 EEEEETTEEEEEEEEETTTEEEESSBTTSTTSTT CS
      GATase 145 takseddeelmeiiekknpfvgvQFHPEststpe 178
                  + s+ +  lm++++ ++pf+gvQ+HPEs+ t  
  CCE29144.1 237 EGSSAPERILMAVRHATRPFWGVQYHPESVCTDS 270
                 4566666789*******************98865 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.1e-10   4.8e-07      17     139 ..     364     526 ..     350     529 .. 0.69
   2 ?   -1.6   0.0      0.66   2.9e+03      82      98 ..     878     894 ..     870     894 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.1e-10
  Anth_synt_I_N  17 hkflLeSaenegge..grySfigldpfle..............lkskngeveveg.................pegeeleeeepldalrellerfrs 79 
                    ++++L+S+++  g+  +r S++++d +                           +                 + g   +  +p+++l e+++  r 
     CCE29144.1 364 DTIILDSSSTTLGDplARHSILAIDVQHAlrleyhvgddhvllR----------QpatstrreecqtvrlagDGGLPVDPWSPWHVLSEYWAGRR- 448
                    699*****98877789**********777455555555554430..........2333333344444444324444444444*********9999. PP

  Anth_synt_I_N  80 aedse................ptelp..fvgGlvGylgYDl.vreieklpksakddlnlpdarlilydtlivfDhkerr 139
                    +++ e                p +++  f gG++G+++Y++    +   + +  + +  pd++++++ + iv Dh+ + 
     CCE29144.1 449 VPQ-EggdgstpstpssssssPHSPSavFKGGFMGFVTYEMgLSTLSPGSVAGARGHHRPDLCMAWVSKSIVLDHQAGI 526
                    533.348999*******99984444466*************43333332234566666*****************9865 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.66
  Anth_synt_I_N  82 dseptelpfvgGlvGyl 98 
                      ep+e ++++G+vGyl
     CCE29144.1 878 TIEPGERSIYSGVVGYL 894
                    456888899*******6 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.6e-06    0.0071     102     127 ..     119     144 ..     106     194 .. 0.82
   2 !    5.9   0.0    0.0021       9.5     198     216 .]     248     264 ..     235     264 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.6e-06
  Peptidase_C26 102 lergvPilgiCrGlqllnvalGGtly 127
                     e++vP+lgiC+G+q l   +GG + 
     CCE29144.1 119 HEQSVPVLGICLGFQSLVEHFGGGIC 144
                    6899*************999**9875 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0021
  Peptidase_C26 198 aieseeakafvlgvQwHPE 216
                    a+++  a+ +++gvQ+HPE
     CCE29144.1 248 AVRH--ATRPFWGVQYHPE 264
                    4444..4468********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.39
# Mc/sec: 7441.29
//
Query:       CCE29145.1  [L=1495]
Description: related to hypercellular protein (hypA) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
          0 1371.0   0.0          0 1370.8   0.0    1.0  1  TRAPPC9-Trs120  Transport protein Trs120 or TRAPPC9, TRAPP II
  ------ inclusion threshold ------
       0.68   10.3   7.0          2    8.8   7.0    1.8  1  Luteo_Vpg       Luteovirus putative VPg genome linked protein


Domain annotation for each model (and alignments):
>> TRAPPC9-Trs120  Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1370.8   0.0         0         0       2    1225 ..       6    1410 ..       5    1411 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1370.8 bits;  conditional E-value: 0
  TRAPPC9-Trs120    2 lsfiaParvrvLlvPigkikrsrFlsfverlraenevrLlDvtpdsrpnrnmFsPlafpnGrilydlstsvpdeehlfLedFEpfRktfvvig 94  
                      l  iaParv++Ll+P+gkik +rF+ fv+rl++e++v+L+D+++d+rpnrnmFsPla+ +G+++ydl+t+ p+ ++l L++F+++R+++++i+
      CCE29145.1    6 LLAIAPARVKALLLPLGKIKAERFTPFVQRLQQEHVVHLKDISADGRPNRNMFSPLAYRDGAMIYDLITHIPPPSQLVLSPFDLYREPLALIA 98  
                      5679***************************************************************************************** PP

  TRAPPC9-Trs120   95 iadgse.....................ekdledleqeleelkekypkalvhnlivfdtp.ee.kaa.lpeevilvpsseesksttlktimcDi 163 
                      +adg+e                     e++ ++leqele+l+++ypkalvh +ivfd++    ++  lp+++++vp+ e++k+ttlkt+mcDi
      CCE29145.1   99 LADGKElqdatfskrrsasgataattvERNIRALEQELEALRDNYPKALVHHVIVFDYMaPPgSTFtLPDGIVTVPPIEQCKRTTLKTVMCDI 191 
                      ***********************************************************84445556************************** PP

  TRAPPC9-Trs120  164 tsnlLaeldslaksyqaiptlrSPg..........sitgssvlkktl...................qkesrssss.....dkaqkRlsmpv.. 220 
                      +s+lLae+++laks++a+pt++SPg           ++g+s+ ++                     +k srsss+     +k q R+smp+  
      CCE29145.1  192 SSLLLAEMTTLAKSFEALPTIDSPGtyesanhtngHSWGNSNGASEGtaqgsqgvlsrrnsqlsipRKLSRSSSTmstvaEKVQTRMSMPAil 284 
                      *************************8888888888666666655544778889999999999999844444444456678**********976 PP

  TRAPPC9-Trs120  221 .asgssstpttfdeisrs...................................................vaglgsssasersrqrgkGRqskl 261 
                       + +ss+ ++t+++                                                       v+g+gs++a+++ r rgkGR+s+l
      CCE29145.1  285 sR-SSSNATATTAR---PstpprtglavtpmtpdgghsgastgtstpepkpakedkidkkrdasrdrvsVQGFGSGGANDKNRLRGKGRISVL 373 
                      42.33333333333...2345788888888888888889999999999999999999999********9************************ PP

  TRAPPC9-Trs120  262 lGnlyLlAGrypdALkefteaatlakklsDylWlgsALEgilvcllLlaylgvdfqipssicqpskdklsslkss.....ssesssrrksles 349 
                      +G++yL+AGr++d+Lke++ +a++a++l+D++W+g+ALE il++llLl++++++fq+p s+c p++++ +s  +s     ++ + s++k+l++
      CCE29145.1  374 IGSMYLQAGRWNDSLKELAAGAATARSLNDHIWHGKALELILMNLLLLGWSNLEFQVP-SVCLPAQERPASVVASliksdDAGDPSQPKHLRQ 465 
                      **********************************************************.*********99877779999899999******** PP

  TRAPPC9-Trs120  350 lpellkellekilslYerslndteesvPqlvysesvlRllkllvavhlrggslndealehiVkgkasepleekeskekprlavlfskseIasl 442 
                      l++ll+ell++il lY+r+++   e +P+l+++e+++R++k+l+avhl+ g+l++ea + iV+g+      +++ +++prla+++++ +I+ +
      CCE29145.1  466 LQTLLPELLDRILGLYSRISS---ENLPPLPLAETTIRFCKILSAVHLSRGKLDQEAFNAIVTGQLP----SHSLTTSPRLAITPTRRQIVDM 551 
                      *******************99...9***************************************333....345789**************** PP

  TRAPPC9-Trs120  443 lfkafplql..kdlslvdqirIlsglAsvlssLgleRKkAfvlrellvslipgleqarkvgaaevgihpaAg................aldlg 517 
                      lfkafp+    + l++ d+++Ilsg+A++l+ Lgl+RKkA+v+rel+++li gl++ar++gaae+g+hpaAg                aldlg
      CCE29145.1  552 LFKAFPAAGgaELLTVADKTSILSGIANLLGPLGLHRKKAMVIRELVSVLIAGLVEARTRGAAEAGVHPAAGlvsfvpgsektsaagvALDLG 644 
                      ******9988899******************************************************************************** PP

  TRAPPC9-Trs120  518 egdqeesirellellleiYgik..........................eaeveriledaslrsfgwlsLqievLrlcinisealpDfegvlkf 584 
                      egd e++i+++l+ll+++Yg+                           ea+++r+l+++++r fg +++++++Lr+cin+sealpDf+gvl+f
      CCE29145.1  645 EGDIEHGIEAFLDLLCKSYGVVafdmrrsssrhapdgadtdakvddsdEATMARVLAQSTTRFFGFTEIKVNILRACINFSEALPDFNGVLRF 737 
                      ************************************************9******************************************** PP

  TRAPPC9-Trs120  585 tvllLtrys.............hllpkdeQvrLleniertvaaakklglkel.aeYWDpfLvrgvklleeseskipieeskselkkatkeeek 663 
                      +++l+++++             ++++++eQvrL+ ni rt+++a+++gl+ l aeYWD+fLvrg++l++ ++s+ipi+++k  l+++   +++
      CCE29145.1  738 SSDLMRTAGsgiapgpkredatPHIHREEQVRLVGNIARTASLATRIGLPPLtAEYWDEFLVRGISLEPLPNSRIPIPHAKGVLPDTVPLRAS 830 
                      **********************99********************************************************************* PP

  TRAPPC9-Trs120  664 sekdpfiynPFkkkkkastkakekllvadEkaefkvtLqNPfefeveiesieletegvefealkeslvigpkstqkltltgkptesgelkitg 756 
                      ++ +pfiynPF k  ++++ +  ++lvadE a+f+ tLqN ++++ve esi+l+tegv+fe+++es v+gp++tq ++l+g+p+e+g + +tg
      CCE29145.1  831 QDVNPFIYNPFLK--EPEEVP-AENLVADELATFRLTLQNTYDVDVEMESIRLDTEGVAFESIPESAVLGPYRTQLVRLQGRPKEAGPIIVTG 920 
                      *************..777775.699******************************************************************** PP

  TRAPPC9-Trs120  757 ckikvlgcrereFpifkkekwkpkkekkikrtgl.................aakekkserrpetkslslkVipeQPelelkstsltqsavMlL 832 
                      + ik++gcrer+Fp+f+k+ w p + +kik++gl                  ++ +  + +++tk l+l+V+++QP++++kstsl qs+vMlL
      CCE29145.1  921 AFIKIRGCRERRFPVFSKH-WVPCRAEKIKSKGLflppaegpddvvaattaGTVPPPPQAKLQTKVLNLNVVRPQPMVVIKSTSLGQSSVMLL 1012
                      ******************9.***999********999999998777555443344444445******************************** PP

  TRAPPC9-Trs120  833 eGekktfsitLeNkSstavdflsfsfqDstienlqkalknkelsaaelYelElqllkkkalrilnkdeekktikPgeeatfeievlgkkglte 925 
                      eGe++ f++t++N+Sst+vdf++fsf Dst+++lq+a+ ++++++aelYe+E++l+kk+alr+ +  +++++i+Pg+eatfe+e+lgk+glt+
      CCE29145.1 1013 EGERQVFTVTMQNTSSTPVDFMLFSFRDSTQAPLQAAMDKRDATSAELYEYEWILMKKQALRLPK-ADQSRHIAPGGEATFEYEILGKPGLTH 1104
                      *****************************************************************.8888*********************** PP

  TRAPPC9-Trs120  926 atiqidYaylgkksseesekfytrqlsipltvtVnasielvrcdilplsessksasadkqlsellseeskkekdsdycLlllDlrNsWpnpls 1018
                      atiq dY+ylg ++++ +e f+trq+ ++ltvtVnas+e++r+d++pl ++  +   +     + s   ++++++dy Ll +DlrN+Wp+++s
      CCE29145.1 1105 ATIQADYTYLGIPRDQMTEPFHTRQVLLDLTVTVNASVEVSRIDAVPLPGPVPVRMLERL---SSSGGTSTTSPDDYFLLAIDLRNAWPSQIS 1194
                      **************************************************4422222222...2234456779******************** PP

  TRAPPC9-Trs120 1019 vsleveeksedefeveetiepgktsRlilpikrislkeedlhkpIPsLn..rnrQFVvsaskiseeeeramreaFWyReelLkrlkgtWke.. 1107
                      ++l+ e    d + ve+ + pgktsR+++p+k+i++  ed h+++PsLn  ++rQFVvs+s+is+e+era+reaFWyRe+lL++l++tW++  
      CCE29145.1 1195 IRLQGE----DGILVEDALLPGKTSRVVIPMKKIYI--EDAHEAVPSLNpcQKRQFVVSTSQISPETERANREAFWYRERLLQQLQATWRTts 1281
                      *****6....**************************..99***************************************************88 PP

  TRAPPC9-Trs120 1108 ssskreGeidlRsirltsrmvdalkledieievslekeeee..........qtgrskfkvktdefltlkvtitnrsskpispilrllPsl.nq 1189
                        s+r+G+i+lR++rlt+rm+d++k++++++ +++ +  +e          + ++++  v++def++lkv++tn++ +pis ++rl+Psl ++
      CCE29145.1 1282 APSERKGVIELRNMRLTRRMIDVIKVDEVDMVMWVVEGGSEnkqdsregenSAKHHQAVVYVDEFMQLKVRVTNQTLRPISAVIRLMPSLcHR 1374
                      889********************************9988888999****998899999*********************************** PP

  TRAPPC9-Trs120 1190 panvaldlsrrllinGvlqqalpvlepgestevelg 1225
                      p +vald +r++++nG lqq lp+l+++este+ +g
      CCE29145.1 1375 PLHVALDHTRKFAWNGALQQRLPELKGHESTEFVMG 1410
                      ********************************9887 PP

>> Luteo_Vpg  Luteovirus putative VPg genome linked protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   7.0   0.00022         2      15      94 ..     248     328 ..     237     338 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00022
   Luteo_Vpg  15 lqlttlkatPkevsnsarvyrtv.rrsrteysrPtivirsqvselsssarP.lPirqvlsllsstPiakyqPsvatlisskl 94 
                 +++    + P++ s s+    tv ++ +t  s P+i  rs     ++ arP  P+r  l++  +tP   +   ++t +s++ 
  CCE29145.1 248 SRRNSQLSIPRKLSRSSSTMSTVaEKVQTRMSMPAILSRSSSNATATTARPsTPPRTGLAVTPMTPDGGHSG-ASTGTSTPE 328
                 456667788999999988877752799***************9999*****447777888888888765433.333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.52
# Mc/sec: 8715.78
//
Query:       CCE29146.1  [L=409]
Description: related to hypercellular protein (hypA) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-17   63.8   0.0    2.6e-17   62.9   0.0    1.5  1  adh_short     short chain dehydrogenase
    6.8e-14   52.0   0.0    1.1e-13   51.2   0.0    1.3  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
       0.11   12.8   0.1        0.2   11.9   0.1    1.4  1  TSCPD         TSCPD domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   4.4e-21   2.6e-17      47     181 ..      97     237 ..      38     246 .. 0.77

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 4.4e-21
                 T..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH.....HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGG CS
   adh_short  47 e..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee.....wervievNltgvflltravlpamlkqssGrIvnvsSva 138
                 e  ++++  i++D +  +++  +v++av+ +g++d+L  + + + +g+++els +      +++ +e  +++ ++ ++a lp + +q+ G+I   +S+ 
  CCE29146.1  97 EgwRDRIRGIRCDGN-VSSCMSAVAEAVAVFGRIDILLCCRSEAVVGTVEELSTNPhtqslVRQQFEAMFFSQVNFIKATLPVLRRQHTGHIMVLTSTC 194
                 144567888999976.788999999999*********8887776666666665543200136777********************************** PP

                 GTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS CS
   adh_short 139 gkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGl 181
                 g+ + +g++++sA+ ++++g+ +sla e+ap +irv++v+P++
  CCE29146.1 195 GHIGTPGLSMFSAATWGLEGYCDSLAYEVAPFNIRVTIVQPAI 237
                 *****************************************85 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   1.9e-17   1.1e-13      52     187 ..     111     251 ..      87     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 1.9e-17
                   SHHHHHHHHHHHHHHHSSEEEEEE--..---EG.CSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHH CS
  adh_short_C2  52 deeqvealveevvekfgklDilvnna..giapk.lkgpfletsreefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynayga 143
                   + +++ ++v+e+v+ fg++Dil+ +   +++ +  + ++   +++ +++ ++  + s ++++ka lp+++++  g i+ l+s+++++++p+ ++ +a
    CCE29146.1 111 NVSSCMSAVAEAVAVFGRIDILLCCRseAVVGTvEELSTNPHTQSLVRQQFEAMFFSQVNFIKATLPVLRRQhtGHIMVLTSTCGHIGTPGLSMFSA 207
                   45678899**************986511555554344444568999*********************8888889*********************** PP

                   HHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHH CS
  adh_short_C2 144 aKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfde 187
                   a  +le+ + +lA+e++p +iRv  v p +    ++s+++ +++
    CCE29146.1 208 ATWGLEGYCDSLAYEVAPFNIRVTIVQPAIEMQSLTSRLTFAPQ 251
                   ***************************98877777777664444 PP

>> TSCPD  TSCPD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.3e-05       0.2      48      72 ..      99     123 ..      84     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.3e-05
       TSCPD  48 vikklkGikCgnkeTSCpDqlakAl 72 
                   ++++Gi+C+  ++SC  ++a+A+
  CCE29146.1  99 WRDRIRGIRCDGNVSSCMSAVAEAV 123
                 5689*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3054.12
//
Query:       CCE29147.1  [L=541]
Description: related to quinate transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-114  383.7  22.5   1.4e-114  383.5  22.5    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.5e-20   73.5  22.1    1.5e-20   73.5  22.1    1.9  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.5  22.5  1.5e-118  1.4e-114       2     452 .]      33     506 ..      32     506 .. 0.93

  Alignments for each domain:
  == domain 1  score: 383.5 bits;  conditional E-value: 1.5e-118
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 + +a++gg++fg+dtg ig++l++ ++  +fg++++++++++   l   ivs +++G+++ +l++++++drfGR+ +l+ a++l+++g + qaa+  k 
  CCE29147.1  33 VCCACFGGMVFGWDTGAIGGVLAMEQTRDKFGYKNRSKTDKS--NLDQNIVSTLQAGCFAACLVTSWFADRFGRRATLIGAGLLTSVGVLFQAASGIKG 129
                 679**********************************98875..777899************************************************* PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS--..... CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPE..... 193
                 ++ v++vgR+++G+gvG+as+++P+y+sE +p ++Rg l+++yql+ ++Gi++a+++++g   ++++   + ++l+lq++pa ll++++l+ PE     
  CCE29147.1 130 TLAVMYVGRFISGLGVGCASTVSPLYVSECCPRAIRGGLTGFYQLFNVVGIMIAFWVNYGClLHVQAPAVYIVPLALQALPAALLVAGMLMSPErsipl 228
                 *************************************************************99999999*********************988854444 PP

                 -HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH..............HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHH CS
    Sugar_tr 194 SPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.........kaswkellssktvrqrlligvvlqifqqltGinaimyysptifen 283
                  Pr+  +k++ e +++vl klrg + +++++a e++++  +  +e            ++el+    +r+r++i vvl+i+qqltG+nai yy+p+if n
  CCE29147.1 229 NPRWCAQKDDWEGTTRVLVKLRGLPAESEYVAREIQEMADQLAQErrlmgdanfRSLMRELWLVPANRKRAIITVVLMICQQLTGVNAINYYAPQIFTN 327
                 6***********************666666666666655555555566798888788899999988********************************* PP

                 SS-THH...HHHHHHHHHHHHHHHHHH.HHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS.....CHHHHHHHHHHHHHHHTTTTHHHHHH CS
    Sugar_tr 284 lglsks...llvtiivgvvnfvatfva.iflvdrfGRRtllllGaagmaicfvilg..ivalllvaks..kaasivaivfialfialfalgwgpvpwvl 374
                 lg++ +   l +t+++gvv++va++v  +f+ d +GRR+ ll+ + + +i+++i+g  + + + v+ +  +a ++vai++i+l++a+f++gwgp +w+l
  CCE29147.1 328 LGMTGTdtsLFATGVYGVVKTVACIVFlLFVADSLGRRRSLLWTSPMLMIVLFIIGiyGRVQPPVEHQpvTAFGYVAITCIYLWAAFFQFGWGPACWIL 426
                 ***999999*****************97799*************************6644444444447****************************** PP

                 HHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH..T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 375 vsElfpqsvRskalaiavavnwlanflisllfpiiteaig..ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 vsE+ + ++R++  +i +a++wl+nf+++ +  ++++++g  g+++f++f+++ vl+ ifv++fvpetkg++le ++elf
  CCE29147.1 427 VSEIPTARLRAVNVSIGAATQWLFNFIMARTVLTMQNTMGykGYGMFFMFGSFDVLMGIFVYVFVPETKGLSLERMDELF 506
                 ***************************************999***********************************997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5  22.1   1.7e-24   1.5e-20       2     336 ..      37     438 ..      36     455 .. 0.75
   2 ?   -6.8   9.4         2   1.8e+04     226     294 ..     426     488 ..     394     499 .. 0.45

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 1.7e-24
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispse...igl....lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa...sslw.ll 88 
                 ++++++ +++ +++g +l +    + +g+   +    +     ++++  +g+++a l++++++drfGrr +l+ + ll+++g +l+  a    +   ++
  CCE29147.1  37 CFGGMVFGWDTGAIGGVLAMeQTRDKFGYKNRSktdKSNldqnIVSTLQAGCFAACLVTSWFADRFGRRATLIGAGLLTSVG-VLFQAAsgiKGTLaVM 134
                 68999999999999999998888888884444422222234457777788999*****************************.444433366555659* PP

       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivslla.fvlfllllpeepperkrkspke 186
                 +v+r+++Glg g++ +++  ++++  p+  rg  +g++++++ +G++++  +   ++ ++  +av+++  ++ +l  ++l++  l+ ++++ + ++ + 
  CCE29147.1 135 YVGRFISGLGVGCASTVSPLYVSECCPRAIRGGLTGFYQLFNVVGIMIAFWVNYGCLLHVQAPAVYIVPLALQALPaALLVAGMLMSPERSIPLNPRWC 233
                 *****************************************************************9998888666515577777766666666666555 PP

       MFS_1 187 ee...........................................kgtgpaplvpawkallkdpvlwillialllf...ffgfsglltllplylqevlg 239
                                                                 +++ ++++w    +++    +++++l++    +g++++ ++ p +  + lg
  CCE29147.1 234 AQkddwegttrvlvklrglpaeseyvareiqemadqlaqerrlmgDANFRSLMRELWLVPANRKRA--IITVVLMIcqqLTGVNAINYYAPQI-FTNLG 329
                 556777888888888888888888888888777777555554443333333333344444444433..44444444333667777*******7.99999 PP

       MFS_1 240 ls....glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt...........ssavllllvlvliGfglgfvfpslla 323
                 ++    + l a+++++++  v++i+  ++ +++d lgrrr ll++ + l+++++++ + +               +v++ ++++ + f+++   p+ + 
  CCE29147.1 330 MTgtdtS-LFATGVYGVVKTVACIV--FLLFVADSLGRRRSLLWTSPMLMIVLFIIGIYGRVqppvehqpvtaFGYVAITCIYLWAAFFQFGWGPACWI 425
                 9999955.77777999999999888..888888****************99999999999999999877755555555555555566677777788888 PP

       MFS_1 324 lasdlappeeagt 336
                 l+s+   ++ ++ 
  CCE29147.1 426 LVSEIPTARLRAV 438
                 8888776666654 PP

  == domain 2  score: -6.8 bits;  conditional E-value: 2
       MFS_1 226 lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglall 294
                 l++ +p+     +  +  +++g   a  +l+++i+a  +  + + +g + + ++++++ + +++g+++ 
  CCE29147.1 426 LVSEIPT--ARLRAVN--VSIG--AATQWLFNFIMARTVLTMQNTMGYKGYGMFFMFGSFDVLMGIFVY 488
                 4444444..3333333..3333..333333333332222222333444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.56
# Mc/sec: 2888.19
//
Query:       CCE29148.1  [L=160]
Description: uncharacterized protein CPUR_02839 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-38  130.5   1.0    4.9e-38  130.3   1.0    1.0  1  ASXH      Asx homology domain


Domain annotation for each model (and alignments):
>> ASXH  Asx homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   1.0   2.7e-42   4.9e-38       4     139 .]       8     135 ..       5     135 .. 0.97

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 2.7e-42
        ASXH   4 aaqkkkkkeeevlltspkSiLakvdlrsllnk.etwslLspeeqqeLlklLPeadriadseeedvdadsalrlsipalealrnnefFrsacaefqerLa 101
                 + ++k+k+  +++lt+pkS+La+ dlr+ll++  +ws+L+ ++++e+l+l+P+   i+d+++++         ++p+le+l+n+++Fr++ca++ e+La
  CCE29148.1   8 RRKQKSKWTSDNILTDPKSPLATSDLRTLLTHpLAWSSLTLDDRREILSLFPDPALILDADTDA---------ARPDLESLINDDAFRADCAAYVEDLA 97 
                 56789*****************************************************999999.........************************** PP

        ASXH 102 eGeydpeelqqalkaeeereegklDpwkekefeeiwGq 139
                 +G++dp++l++a++a+e+r++g++D++++++f e+wGq
  CCE29148.1  98 QGRHDPQWLRDAWRAHERRKRGEFDEFLRRKFGEDWGQ 135
                 *************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1234.95
//
Query:       CCE29149.1  [L=341]
Description: related to protein conferring sensitivity to killer toxin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.4e-103  344.9   0.0     5e-103  344.7   0.0    1.0  1  Elong_Iki1  Elongator subunit Iki1


Domain annotation for each model (and alignments):
>> Elong_Iki1  Elongator subunit Iki1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.7   0.0  2.8e-107    5e-103       1     298 []      16     327 ..      16     327 .. 0.94

  Alignments for each domain:
  == domain 1  score: 344.7 bits;  conditional E-value: 2.8e-107
  Elong_Iki1   1 LlsklLslrdsaSpLtLvlDsleqsakplleelirrakssktkvifvsfetlkkpkgvdvfieaterskklkelakeiksalspkssekk..kkalvii 97 
                 Ll+klL+lrd aSpLtL+lDsleq+a+p+lee+++rak++ktkvi++sf+t+ kp +vdv+++a   +++l+ + +e+ ++++ +++++k  ++a+vi+
  CCE29149.1  16 LLQKLLNLRDAASPLTLILDSLEQPAQPVLEEFVTRAKIAKTKVILLSFATVAKPTDVDVLVKA--AGRDLRVVMEELVAHYPVATAAQKpsQRAVVIV 112
                 8***************************************************************..7777************8776666347******* PP

  Elong_Iki1  98 DslnplaslikeeslaaflssllsspsvslvavYHtdv.........eyapspltlLkylAttiltveslshelarkaardrsleepefgleeglegvl 187
                 Dsln+las+  ++++++fls ++ +p++s++ +YHtdv         ey+p+p+t+L++lAt+il+++sls+e++r+ ar+r+++epe+gl+e++egv+
  CCE29149.1 113 DSLNHLASS-AASAMPSFLSGII-TPAISVLSIYHTDVpvvlprssnEYEPHPFTMLSHLATAILRLSSLSQEIDRQGARNRAVQEPEWGLKEHREGVI 209
                 ******965.899**********.6************************************************************************** PP

  Elong_Iki1 188 vg.......egvvlelelRRkSGRavsekfvldsasheyeavkekeeeeeeaek.evllledhpltakpeeeeesea.....pesTFnLgltekqrrdr 273
                  g       + vv+++elRR+SGR+v+ekf+l+ ++++ ++       ++ + + + +ll+dh+++++p++++++e+     pesTF+Lgltekqrrdr
  CCE29149.1 210 KGlasktasSSVVIDMELRRRSGRTVAEKFILQRGEETAAHGF-----AK-SGTgKLMLLTDHDVFKAPDANGTGEGegeegPESTFDLGLTEKQRRDR 302
                 ******99768************************98888662.....22.233379*************99999989999****************** PP

  Elong_Iki1 274 egvvLPyfdAQkelgageGGrIlYe 298
                 eg+vLPyfdAQ+++gageGGrIlYe
  CCE29149.1 303 EGIVLPYFDAQTDIGAGEGGRILYE 327
                 ************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2561.28
//
Query:       CCE29150.1  [L=219]
Description: probable synaptobrevin SEC22 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-23   80.2   1.1    1.5e-22   79.4   0.4    1.8  3  Longin         Regulated-SNARE-like domain
    1.3e-14   53.7   0.1    5.5e-14   51.7   0.0    1.9  2  Synaptobrevin  Synaptobrevin
     0.0029   17.6   0.8      0.043   13.9   0.1    2.2  2  DUF1664        Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> Longin  Regulated-SNARE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.1   6.9e+03      32      57 ..      12      37 ..       7      38 .. 0.68
   2 !   79.4   0.4   2.5e-26   1.5e-22       2      83 ..      40     120 ..      39     121 .. 0.94
   3 ?   -3.2   0.0       1.5   8.9e+03      39      58 ..     126     145 ..     122     148 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
      Longin 32 gltylviadesyprrlaFafLeeikr 57
                gl+ +   d++     + + L+e+k+
  CCE29150.1 12 GLMLCASLDDTTEATQPSSSLTEVKQ 37
                56666666777777788888888876 PP

  == domain 2  score: 79.4 bits;  conditional E-value: 2.5e-26
      Longin   2 klilkkishsspqkltythdsytfhylaedgltylviadesyprrlaFafLeeikreFlakygtaktadaadlrpyafaeFd 83 
                 +++ +k+s++s+++++++ + +t+hyl+++++++l+i+d+sypr+laF++L+++  eF++++ ++   +++ lrpyaf++F+
  CCE29150.1  40 RQLTRKLSRTSESQASIQSGPHTIHYLIDKDIIFLTICDASYPRKLAFTYLSDLSHEFQTTHTPQAI-HSPLLRPYAFMDFE 120
                 7999***99889******999******************************************9655.888**********7 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.5
      Longin  39 adesyprrlaFafLeeikre 58 
                 + ++y    a + L+++++e
  CCE29150.1 126 TRATYADARASQNLDKLHDE 145
                 55666666666666666665 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       0.2   1.2e+03      37      60 ..      20      45 ..      16      51 .. 0.53
   2 !   51.7   0.0   9.1e-18   5.5e-14       3      82 ..     137     216 ..     135     219 .] 0.96

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.2
                   CCCCHHHHHHHH..HHHHHHHHHHHH CS
  Synaptobrevin 37 vdktenLqssaq..qFkkqarklkrk 60
                   +d te+ q s++  + k+q+r+l rk
     CCE29150.1 20 DDTTEATQPSSSltEVKQQTRQLTRK 45
                   55555555444322445555555555 PP

  == domain 2  score: 51.7 bits;  conditional E-value: 9.1e-18
                    XHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXX CS
  Synaptobrevin   3 dklakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlilili 82 
                    ++l+k+++e+++v+++m++Ni+++l rg+ ld++ + +++L++ ++++++ a +++ + ++k++   ++l++ vl+++++
     CCE29150.1 137 QNLDKLHDELKDVTKVMTKNIEDLLYRGDSLDKMGEISSRLRDDSKKYRRAAVRINWELLLKQYGPFAALGFFVLLFVYM 216
                    7899************************************************************************9986 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.031   1.9e+02      75      96 ..      32      53 ..      16      69 .. 0.49
   2 !   13.9   0.1   7.2e-06     0.043      28      99 ..     119     191 ..     114     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.031
     DUF1664 75 ldeqkeiskeikeevtevredl 96
                l e+k+ ++++++++++ +e  
  CCE29150.1 32 LTEVKQQTRQLTRKLSRTSESQ 53
                2333333333333333333333 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 7.2e-06
     DUF1664  28 lsdlmfvTkrslsdavesvskqleqvseslaatkrhLssridrv...dkkldeqkeiskeikeevtevredlsei 99 
                 + +++  T+   +da +  s++l+++ ++l+++ + ++++i+ +   +++ld++ eis+ ++++ ++ r+   +i
  CCE29150.1 119 FENFVVKTRATYADARA--SQNLDKLHDELKDVTKVMTKNIEDLlyrGDSLDKMGEISSRLRDDSKKYRRAAVRI 191
                 67788888888888876..79*********************99666799**********999988888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1618.52
//
Query:       CCE29151.1  [L=380]
Description: uncharacterized protein CPUR_02842 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.4    8.4   7.8        1.3    8.4   0.1    2.3  2  CAP_N     Adenylate cyclase associated (CAP) N terminal
        8.3    6.8  16.3        7.4    7.0  10.7    2.3  2  DUF3446   Early growth response N-terminal domain


Domain annotation for each model (and alignments):
>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00015       1.3     239     273 ..     151     182 ..      97     190 .. 0.67
   2 ?    1.9   3.5     0.014   1.3e+02     246     274 ..     242     265 ..     222     276 .. 0.41

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00015
                 -XXXXXXX....XXXXXXXX.....XXXXXXXXXX CS
       CAP_N 239 asaaaaggpppPpPpPppasvfeeesaaasasaaa 273
                 ++a aa++ pp+pP Pp +s  ++++ ++++ + +
  CCE29151.1 151 QRALAASNLPPSPPLPPSSS--SQQQ-QQQQGQGQ 182
                 33444444444444443332..2222.33333333 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.014
                 X....XXXXXXXX.....XXXXXXXXXXX CS
       CAP_N 246 gpppPpPpPppasvfeeesaaasasaaag 274
                 +   P+PpP  +s  + + + +++++a++
  CCE29151.1 242 K---PKPPP--SSSSSPSPSPSASASASA 265
                 1...33333..222211111111111111 PP

>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2     0.019   1.7e+02      33      46 ..     160     173 ..     149     197 .. 0.55
   2 ?    7.0  10.7   0.00082       7.4      34      60 ..     243     269 ..     230     287 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.019
     DUF3446  33 ppsspsssssssss 46 
                 pps+p ++ssss +
  CCE29151.1 160 PPSPPLPPSSSSQQ 173
                 33333333333322 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00082
     DUF3446  34 psspsssssssssssssssspslscsv 60 
                 p +p+sssss+s s+s+s+s+s+s+s+
  CCE29151.1 243 PKPPPSSSSSPSPSPSASASASASASA 269
                 444555555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1193  (0.0665402); expected 358.6 (0.02)
Passed bias filter:                      716  (0.0399353); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 2858.31
//
Query:       CCE29152.1  [L=437]
Description: probable endochitinase class V precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-62  211.2   6.1    3.3e-62  211.0   6.1    1.0  1  Glyco_hydro_18  Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.0   6.1   1.9e-66   3.3e-62       2     312 .]      44     394 ..      43     394 .. 0.89

  Alignments for each domain:
  == domain 1  score: 211.0 bits;  conditional E-value: 1.9e-66
                     EEEEEEGGGGGSSG.C...SHTTTESEEEEEEEEEEETTTEEEESS.TTHH.................HHHHHHHHHHHHTSTT-EEEEEEEETT CS
                     xxxxxxxxxxxxxx.x...xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   2 vvgYysswesygnn.y...lpsaklthiiyaFakidgengkvvvsd.wedl.................gnfeqlkklkkkknpgvkvllsiGGwt 74 
                      vgYy++w  y+++ +   +p+++lth+ yaFa+i++++g+  +sd w+dl                 gn++q+  lk kk++++k+ ls+GGwt
      CCE29152.1  44 AVGYYGNWDIYAAKfFvndIPASQLTHLAYAFANINNQTGECMLSDtWADLqyaypgdvtnstgsnvfGNVKQMYLLK-KKYRNLKTTLSVGGWT 137
                     59*********8753478899********************************************9999999999999.**************** PP

                     TTTHHHHHHTSHHHHHHHHHHHHHHHHHCT-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHHHHHH..HTSTTCEEEEEEESSHHHHHHHCHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  75 dssgfslaastdasrkkfadsvvsllrkygfDGiDidweypggnpedkenytallkelrealdkaka..tegkkllLsaavpasasdlskgydlp 167
                     +  +f  +++++++r++f++s v+l++++gfDG+Did+ey +g  ++++++++ll++lreald++k   ++   +lL+ a pa++ ++ +  d +
      CCE29152.1 138 YRVNFPPMLASEKTRAEFVRSSVKLVEDLGFDGLDIDYEYVDG-SKEAAQMVDLLRRLREALDELKVttKATAPFLLTYASPAGKTHYTQL-DFE 230
                     ****************************************877.677****************66665688899*************9877.*** PP

                     HHHHHTSEEEEETTTSSS.TTSSBE--SS-SSB....T...CSSHHHHHHHHH.HTT--GGGEEEEEESEEEEEEESSSSSS..........TST CS
                     xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx....x...xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxx RF
  Glyco_hydro_18 168 kiakylDyvnvmtYDfhg.swdnvtghhaplyd....a...slnvdeavkeyl.kagvpakklvlGvpfygrawalvsgadn..........tke 243
                     k+  y+D+ n m+ D++g  ++n+ g+  ++++    +    + + +++++yl + +vp +k+vl  p ygra++++sg ++             
      CCE29152.1 231 KMTPYIDFYNFMAVDYMGpGFSNNSGYLDNVFAdkknRnatDFDTASGIHYYLhEGKVPGNKIVLQNPLYGRAFNGTSGIGKpfvdagtlgsLGT 325
                     ******************65666777777788787651567************6667*******************9994447777778888889 PP

                     TTEEEHHHHHHHHTEEEEEEEEETTTTEEEEEETT..EEEEE-SHHHHHHHHHHHHHTTESEEEEETGGGS CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 244 egvlsykelkellkkakakrkydskakapyvydge..efvsyDdpksikakadyvkakglgGvmiWsldqD 312
                     +g++syk+l+      +a+++ + + +++y yd+    +v +D+p++++ ka yvk+ +lgG ++W+++qD
      CCE29152.1 326 AGTWSYKDLPIP--GFNATVTNNYVVGGSYTYDAAkqYLVAIDTPEMARFKASYVKKMKLGGTAWWEVSQD 394
                     9******99873..3334444455556699999999999******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.52
# Mc/sec: 2531.45
//
Query:       CCE29153.1  [L=166]
Description: uncharacterized protein CPUR_02844 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 1451.50
//
Query:       CCE29154.1  [L=407]
Description: uncharacterized protein CPUR_02845 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   22.3  39.0     0.0023   18.1   8.2    3.4  3  IBR        IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   3.8   2.9e-05      0.52      15      52 ..     160     191 ..     150     195 .. 0.74
   2 !   18.1   8.2   1.3e-07    0.0023      13      59 ..     238     286 ..     230     289 .. 0.79
   3 !    4.2  12.7    0.0029        52      38      62 .]     310     332 ..     285     332 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.9e-05
         IBR  15 dpnlkwCprpdCeaiieksegcksvtCskCgfefCfnC 52 
                 ++ l++C    C + + +   ++sv+C+ C++++C +C
  CCE29154.1 160 KSALRHCV--ACTSDVAS---TDSVRCP-CSHDYCGDC 191
                 45578888..78855544...55599**.********* PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.3e-07
         IBR  13 es.dpnlkwCprpdCeaiiekseg.cksvtCskCgfefCfnCkkewHeg 59 
                 e  + ++++C    C++++ +     + +tC kC+ ++C+ Ck e H +
  CCE29154.1 238 EYgTLDKTYCHVRTCSTFVPPAFVkDDVATCVKCQSKTCTMCKGETHTD 286
                 44455689***********77777333478*****************75 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0029
         IBR  38 svtCskCgfefCfnCkkewHeglsC 62 
                 +++C+ C+ +fC+ C+ +w + +sC
  CCE29154.1 310 YSSCR-CNAQFCYVCGLKWKQ-CSC 332
                 368**.*************96.666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3302.21
//
Query:       CCE29155.1  [L=286]
Description: uncharacterized protein CPUR_02846 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.11   12.2   0.6       0.17   11.5   0.6    1.3  1  Peptidase_C5  Adenovirus endoprotease
       0.68    9.8   8.6        1.5    8.7   8.6    1.7  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
        5.1    7.5  14.1        0.2   12.0   8.3    1.7  2  zf-RING_2     Ring finger domain


Domain annotation for each model (and alignments):
>> Peptidase_C5  Adenovirus endoprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   2.9e-05      0.17      74     162 ..     162     256 ..     157     267 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.9e-05
                   HHHHH-TTSEEEEEEE-EE-S-TT---.HHHH.HHHHHHHHHH...-TTS-SSSSTTGGGS--EEGGGT.TSGGGHHHHHHHHHHHHHHHHHH-H CS
  Peptidase_C5  74 rsalskpdrcitleksteavqctcsaa.cGlf.cilflasfar...ykqkpldgnpvidlvdGvkpskl.nspqekellhrnqeklyaflekksa 162
                   +sal++   c   + st++++c+cs   cG   + lf a+ +    ++ +  ++   +dl++     +l  +   k+l h+  +k+y ++++ s+
    CCE29155.1 162 KSALRNCVACTSEVASTDSIRCPCSHDyCGDCtTSLFSAAINDeslFPPRCCKEPIPLDLIKPFLSATLlGAYEAKKLEHETLDKTYCHVQTCST 256
                   79**********************97438854145666666532225556666555577777765544404444556667777777777776665 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   8.6   0.00026       1.5       1      31 [.     168     199 ..     168     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00026
                 -TTT-S--SS-E..E-TTS--B-CHHHHHHHH CS
    zf-C3HC4   1 CpiCleeakepn.elleCkHsfCskCirkilk 31 
                 C  C++e++ ++    +C H +C +C +++ +
  CCE29155.1 168 CVACTSEVASTDsIRCPCSHDYCGDCTTSLFS 199
                 8999998888876789***********99887 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   8.3   3.3e-05       0.2       2      33 ..     167     197 ..     166     213 .. 0.85
   2 ?   -3.6   0.3       2.6   1.6e+04      21      26 ..     249     254 ..     241     256 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.3e-05
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerw 33 
                 +C+ C++e+ s+ds++ +pC+H ++ +C + +
  CCE29155.1 167 NCVACTSEVASTDSIR-CPCSHDYCGDCTTSL 197
                 7*********999988.66*********8765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.6
   zf-RING_2  21 CgHv.fh 26 
                 C Hv  +
  CCE29155.1 249 C-HVqTC 254
                 3.33222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2214.74
//
Query:       CCE29156.1  [L=513]
Description: uncharacterized protein CPUR_02847 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-11   44.4  39.4    6.3e-05   23.1   8.4    3.4  3  IBR       IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   3.3   2.7e-05      0.48      18      54 ..     165     195 ..     149     197 .. 0.74
   2 !   23.1   8.4   3.5e-09   6.3e-05      10      59 ..     237     288 ..     232     290 .. 0.81
   3 !   22.3  11.8   6.4e-09   0.00012      12      62 .]     302     348 ..     293     348 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.7e-05
         IBR  18 lkwCprpdCeaiieksegcksvtCskCgfefCfnCkk 54 
                 l++C    C + +   ++++s++C+ C++++C +C  
  CCE29156.1 165 LRNCV--ACTSEV---ASTDSIRCP-CSHDYCGDCTT 195
                 66666..666444...4455599**.*********75 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 3.5e-09
         IBR  10 ksles.dpnlkwCprpdCeaiiekseg.cksvtCskCgfefCfnCkkewHeg 59 
                 k+le  +p++++C    C+a++ +     + +tC kC+ ++C+ Ck e+H +
  CCE29156.1 237 KKLEHeTPDKTYCHVRTCSAFVPPAFVkDDVATCVKCQSKTCTMCKGEMHTN 288
                 4466669***************77777333478*****************86 PP

  == domain 3  score: 22.3 bits;  conditional E-value: 6.4e-09
         IBR  12 lesdpnlkwCprpdCeaiieksegcksvtCskCgfefCfnCkkewHeglsC 62 
                 + +++ ++ C    C +++  + gc+++tC+ C+ efC+ C+ +w + +sC
  CCE29156.1 302 IATEKGWQRCY--SCRRMVGLDTGCNHITCR-CKAEFCYVCGLKWKQ-CSC 348
                 5556779***9..9*****************.*************96.666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1054  (0.0587874); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3759.22
//
Query:       CCE29157.1  [L=94]
Description: uncharacterized protein CPUR_02848 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 742.13
//
Query:       CCE29158.1  [L=421]
Description: uncharacterized protein CPUR_02849 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-12   46.5  49.9    3.8e-07   30.2   7.1    4.4  4  IBR       IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   2.0   4.7e-05      0.85      34      54 ..     157     176 ..     130     179 .. 0.74
   2 !   30.2   7.1   2.1e-11   3.8e-07       9      62 .]     217     272 ..     213     272 .. 0.85
   3 !   22.5  12.3   5.4e-09   9.7e-05      18      62 .]     290     330 ..     277     330 .. 0.87
   4 ?    1.6   5.1     0.018   3.2e+02      36      54 ..     391     418 ..     364     420 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 4.7e-05
         IBR  34 egcksvtCskCgfefCfnCkk 54 
                    ++++C+ C++++C +C+ 
  CCE29158.1 157 PVFETIRCP-CSHDYCRDCMT 176
                 2344589**.*********85 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 2.1e-11
         IBR   9 kksles.dpnlkwCprpdCeaiieksegcks.vtCskCgfefCfnCkkewHeglsC 62 
                 +k+le  +pn+++C  p+C+a++ +   +++ +tC +C+ ++C+ Ck ++H + +C
  CCE29158.1 217 AKKLEHeTPNKTYCHVPNCSAFVPPAFVQDDvATCVRCRSRTCTICKGQMHTQRDC 272
                 44566669***************88888555478*****************99888 PP

  == domain 3  score: 22.5 bits;  conditional E-value: 5.4e-09
         IBR  18 lkwCprpdCeaiieksegcksvtCskCgfefCfnCkkewHeglsC 62 
                 ++ C    C +++  + gc+++tC+ Cg +fC+ C+++w + ++C
  CCE29158.1 290 WQRCY--SCRRLVDLNTGCNHMTCR-CGAQFCYVCGVQWKQ-CDC 330
                 889*9..9*****************.*************86.566 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.018
         IBR  36 cks.........vtCskCgfefCfnCkk 54 
                 c++          +C++C +  C +C+ 
  CCE29158.1 391 CEQcddymphfvYECRNCLTIACRRCRY 418
                 33355566666567************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1075  (0.0599587); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2909.13
//
Query:       CCE29159.1  [L=471]
Description: uncharacterized protein CPUR_02850 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-21   75.0   0.2    1.1e-20   74.4   0.2    1.3  1  Abhydrolase_3  alpha/beta hydrolase fold
    4.6e-15   55.3   0.0    6.7e-15   54.8   0.0    1.1  1  Say1_Mug180    Steryl acetyl hydrolase
  ------ inclusion threshold ------
      0.029   13.6   0.7      0.043   13.1   0.1    1.5  2  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.2   1.8e-24   1.1e-20       1     209 [.     213     429 ..     213     431 .. 0.85

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 1.8e-24
                    EEEE--STTTS--TTTTHHHHHHHHHH..HTSEEEEEE---TTTS..-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelake..lgavvvsvdYrlAPeh..pfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalra 92 
                    +v fHGGG+++  l  h +l+  +a++   ++vv + +Y l   h  ++P ++++a + +++l+ +   +++ ps+i+l+GdSaG++l + + l +
     CCE29159.1 213 VVLFHGGGYMAPALGRHLELAIGFADRprGDVVVHMLQYGLVSGHtnQYPVQLQQATSLIHHLLHT---QHIAPSQIILLGDSAGAHLLLSLILHL 305
                    689**********************972246777789***98755338****************99...69************************* PP

                    HHTT---.........EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS.-.SST--..-EEEEEET CS
  Abhydrolase_3  93 rdegepk.........vagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylpeadrddplaspllae.d.lsglp..ptlvvvae 175
                    +  + p           ag vl++P++ l+++  +++   ++ + + +l +++l+ +++ +l++a   dp+  pl a+ + +++lp   +l++ +e
     CCE29159.1 306 HHPN-PLvksipfqgrFAGAVLLSPWLSLHTP-VQAM---RDTDAEDVLDKESLARWADGFLGGAPP-DPWNDPLTAPrEwWTELPieDILLLYGE 395
                    9985.33579*****************88444.3444...333445799*************76555.577888888423688876447******* PP

                    T-TTHHHHHHHHHHHHHTT--EEEEEETTEETTG CS
  Abhydrolase_3 176 fDplrdegeayaerlraagvevelieyegmvHgf 209
                    +++lrd+g+++a  l ++  ++  + ++g+vH+ 
     CCE29159.1 396 EELLRDDGARLAGVLGECHASTVAVAVPGEVHVH 429
                    ********************************75 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   1.1e-18   6.7e-15     125     332 ..     213     416 ..     203     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 1.1e-18
  Say1_Mug180 125 llylHGGgfalklipvtlvfLsnlrklfp.dmailvsDYtvtaakdqskkYplqvleslavydylvks..kgfknvvvlGdSaGGnlvLslllklskl 219
                  ++ +HGGg++ +     l            d+ + ++ Y +++   ++++Yp q+ ++  + + l ++  ++  ++++lGdSaG  l+Lsl+l+l++ 
   CCE29159.1 213 VVLFHGGGYMAPALGRHLELAIGFADRPRgDVVVHMLQYGLVS--GHTNQYPVQLQQATSLIHHLLHTqhIAPSQIILLGDSAGAHLLLSLILHLHHP 308
                  6789*******9999999888888887777*************..99**********999888886551156689**********************9 PP

  Say1_Mug180 220 nkvv..lP.....kkaiaiSPWlnltildekekeylkasdklDvlclkglelfgklyvnnrepeeelktdefvnieknfdievWsei.lekckllity 309
                  n  v  +P      +a+++SPWl l     + ++ ++++d  Dvl  ++l +  + +++      ++ +d+++  ++    e W+e+ +e+  +l++y
   CCE29159.1 309 NPLVksIPfqgrfAGAVLLSPWLSLH----TPVQAMRDTDAEDVLDKESLARWADGFLGG--APPDPWNDPLTA-PR----EWWTELpIED--ILLLY 393
                  9766445644433479*******998....8899*************************9..666788888775.55....7999997775..8999* PP

  Say1_Mug180 310 GddEilkdqikllidkiselkek 332
                  G++E+l+d+   l+  ++e+++ 
   CCE29159.1 394 GEEELLRDDGARLAGVLGECHAS 416
                  *********99999999999876 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1      0.96   5.8e+03       3      14 ..     209     220 ..     208     233 .. 0.80
   2 ?   13.1   0.1   7.1e-06     0.043      51     119 ..     257     340 ..     250     358 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.96
  Hydrolase_4   3 pkavvvlvHGla 14 
                  p   vvl+HG +
   CCE29159.1 209 PVRHVVLFHGGG 220
                  567899999986 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 7.1e-06
  Hydrolase_4  51 hvpsfddyvdDlaafvekvkeehpel..plfllGhSmGGliallyl..lrypd..........kvaglilsaPalkikaklk.a 119
                  h +++   ++ + ++++++  +++ +  +++llG S G+ + l+++  l++p+          ++ag++l +P+l+++++++ +
   CCE29159.1 257 HTNQYPVQLQQATSLIHHLLHTQHIApsQIILLGDSAGAHLLLSLIlhLHHPNplvksipfqgRFAGAVLLSPWLSLHTPVQaM 340
                  55566666677778888887555555489***************99887888899****9*999*************9987644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3368.76
//
Query:       CCE29160.1  [L=530]
Description: uncharacterized protein CPUR_02851 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-05   23.7   0.0      0.045   12.4   0.0    2.9  3  Transferase  Transferase family
  ------ inclusion threshold ------
      0.028   15.1   1.9      0.052   14.3   1.9    1.3  1  HrpA_pilin   HrpA pilus formation protein


Domain annotation for each model (and alignments):
>> Transferase  Transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.022     2e+02      42      80 ..      87     122 ..      58     127 .. 0.69
   2 !    6.8   0.0   0.00025       2.3     127     169 ..     193     233 ..     175     267 .. 0.86
   3 !   12.4   0.0     5e-06     0.045     232     382 ..     310     460 ..     297     466 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.022
  Transferase  42 ykknkelsqenvsekLktsLsetL.tkfypLAGrLktses 80 
                  +  ++ l+    +e L+t+L +++ +++  L GrL + ++
   CCE29160.1  87 FIVEECLD----EEALRTALDQLIrKHWRKLGGRLIRRKD 122
                  44444444....468*******99457899*****77665 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00025
  Transferase 127 egeaipllavqvTkfkcGgvalgvsvsHaiaDgaSlktfiesw 169
                  ++   pll v v  f +   ++  s+ H ++D +++ ++i++ 
   CCE29160.1 193 PP-DSPLLYVHVSLFPDA-TVIATSIPHPVVDQMGMANIIKAC 233
                  33.36************9.999******************975 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 5e-06
  Transferase 232 askleeLkkkasdesngkpa..trfesvtallWrcavkarkldesketvlgiavdiRsrlepklpeeyfG...Nallsvvvkstakellseelsrive 324
                  +++l++  +ka  e +++ +  +  ++vtal+ ++ + ++k+++  +  l + +++R  +++  pe + G   N l ++ +  +++   s ++ +i+ 
   CCE29160.1 310 IRALRDKYSKALAEMHSDYTriSDSDVVTALITKLSRMSKKTPR--TLCLSQTMNLRGLVPELSPERSAGfihNCLHTSTARFRID--PSTPARDIAY 403
                  56666666777777777765568889********9999988876..578*********9999999888883335555555555553..3556666666 PP

  Transferase 325 kvkeavkkaitkeylsseidweens.tlkaelvskgkkdgeevtvsswlklplyevdFG 382
                   + +a++k+ + +  ++ +  e +   +    +   ++ + ++ vs w+    ++vdFG
   CCE29160.1 404 ANRKAIEKSRDPRDIEIGMVVEREMvRIRQ-GSHVCEPFDRSYHVSNWCA-AWNDVDFG 460
                  666666664444433333333333212333.3333444449*******96.58999999 PP

>> HrpA_pilin  HrpA pilus formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.9   5.8e-06     0.052      27      78 ..      20      73 ..       8      76 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.8e-06
  HrpA_pilin 27 daaGdsksaeaqakamkesDassarlialqaq..eamkkkventLqaiqsakeD 78
                +++  ++s+++q + m++ D +sar i+  aq  +  +++++n ++ i  a  D
  CCE29160.1 20 QGTKRARSSHSQRNSMNKADRKSARRIDRRAQtdAETRTETKNSMEVIPCAAAD 73
                55667899*******************987772145678999999999988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      669  (0.0373138); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3730.93
//
Query:       CCE29161.1  [L=164]
Description: uncharacterized protein CPUR_02852 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1264.93
//
Query:       CCE29162.1  [L=150]
Description: uncharacterized protein CPUR_02853 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1143.63
//
Query:       CCE29163.1  [L=258]
Description: uncharacterized protein CPUR_02854 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-24   86.8   0.0    2.2e-24   86.1   0.0    1.4  1  Ribonucleas_3_3  Ribonuclease-III-like


Domain annotation for each model (and alignments):
>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   1.2e-28   2.2e-24       2     128 .]     105     253 ..     104     253 .. 0.83

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 1.2e-28
  Ribonucleas_3_3   2 eelleqaltHkSfangrkghNerLefLGdavLklsvseyllek................aekdege..........ltklraslvseeslaeiA 69 
                      eel++ a+tHkSf++gr+g N +L+ +G+ +L++  ++++++k                +     +          ++   +++v +e ++e+A
       CCE29163.1 105 EELKWLAVTHKSFDQGRRGFNDKLALMGRVTLAMEATKEIVSKaplegsrqeddlprepF-----QseqlapvdnlNVLNPKDVVGKEVMSEFA 193
                      79*******************************976666666645555665555555441.....044455555445555579*********** PP

  Ribonucleas_3_3  70 kelgLgkvlrl.rkgeeetegsgrekvladaleAliGAiyldkgaevaqefveekilkkl 128
                       ++gL +v+r+  + ++++++sg+e vl+ a+ A+iGAi l++g  va ++v+e+il++l
       CCE29163.1 194 TRIGLVEVVRWkPRLTKQLRASGLEVVLNGAIMAIIGAITLQHGSVVAASVVRERILPRL 253
                      ***********7555788***************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1892.47
//
Query:       CCE29164.1  [L=403]
Description: uncharacterized protein CPUR_02855 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3026.63
//
Query:       CCE29165.1  [L=1126]
Description: uncharacterized protein CPUR_02856, partial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0078   16.4   0.0      0.014   15.6   0.0    1.3  1  CENP-C_C  Mif2/CENP-C like
  ------ inclusion threshold ------
       0.21   11.6   0.3         62    3.7   0.0    4.6  6  Pox_A3L   Poxvirus A3L Protein


Domain annotation for each model (and alignments):
>> CENP-C_C  Mif2/CENP-C like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.5e-06     0.014      13      83 ..    1047    1117 ..    1040    1119 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-06
                  EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE CS
    CENP-C_C   13 asGilkLppgaeKkkknskkatlvFyViqGrvevtvsktsfvigkgsvFqvPagneysieNklnkeaklfF 83  
                  a  +l++ pg++ ++   ++++  + V  G+v++t  + s  +g+ ++F v  g    +eN+l +ea l+ 
  CCE29165.1 1047 AFNVLTIRPGQSHHTIVQRDMMQLYSVASGKVHITTGGVSVALGPNGMFPVRGGERCVVENRLYSEATLHC 1117
                  55678999999999999999999999*****************************************9985 PP

>> Pox_A3L  Poxvirus A3L Protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.1   9.2e+02       7      34 ..     464     491 ..     460     511 .. 0.78
   2 ?   -1.8   0.0      0.35   3.1e+03       8      28 ..     595     615 ..     594     617 .. 0.90
   3 ?   -1.0   0.0      0.21   1.8e+03       9      27 ..     746     764 ..     741     767 .. 0.89
   4 ?   -2.9   0.0       0.8   7.2e+03       8      29 ..     770     791 ..     769     793 .. 0.85
   5 ?   -0.5   0.0      0.14   1.3e+03       7      27 ..     819     839 ..     815     841 .. 0.87
   6 ?    3.7   0.0    0.0069        62       7      27 ..     944     964 ..     940     967 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.1
     Pox_A3L   7 dpprrCskCaanlveylkeDretikmil 34 
                 ++p  Cs  a+ + + l+ D+e++   l
  CCE29165.1 464 ERPDACSPNAQSIAARLQADKEALGERL 491
                 68999*****************985544 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.35
     Pox_A3L   8 pprrCskCaanlveylkeDre 28 
                 +p  Cs+ a+ +++ l+ D++
  CCE29165.1 595 QPDTCSRIAQSVMARLEADKD 615
                 6899*************9987 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.21
     Pox_A3L   9 prrCskCaanlveylkeDr 27 
                 p rCs+ a+ +v+ l+ D+
  CCE29165.1 746 PDRCSSNAQSIVARLEADK 764
                 89**********9999996 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 0.8
     Pox_A3L   8 pprrCskCaanlveylkeDret 29 
                 +p  Cs+ a+ ++  l+ D++ 
  CCE29165.1 770 QPDTCSRNAQSVMVRLEADKDV 791
                 6889**9999999999999885 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.14
     Pox_A3L   7 dpprrCskCaanlveylkeDr 27 
                 ++p rCs+  + +v+ l+ D+
  CCE29165.1 819 EQPDRCSSNEQSIVARLEADK 839
                 6899**********9999996 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.0069
     Pox_A3L   7 dpprrCskCaanlveylkeDr 27 
                 +pp  Cs+ a+n+v+ l+ D+
  CCE29165.1 944 KPPDTCSSNAQNIVARLQADK 964
                 79****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 7591.63
//
Query:       CCE29166.1  [L=280]
Description: related to 60s ribosomal protein L2 (mitochondrial) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-23   81.5   0.0    6.4e-23   80.6   0.0    1.5  1  Ribosomal_L27  Ribosomal L27 protein
  ------ inclusion threshold ------
      0.039   14.3   0.4      0.066   13.6   0.4    1.3  1  DUF4288        Domain of unknown function (DUF4288)


Domain annotation for each model (and alignments):
>> Ribosomal_L27  Ribosomal L27 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   7.1e-27   6.4e-23       1      79 []      45     128 ..      45     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 7.1e-27
  Ribosomal_L27   1 AhkkagGstk.ngrdskgkrlGvKkfggqlvkagnIivrQrgtkfhpGenvgiGkdhtlfAlvdGvVkfe....kkkkrkyvsv 79 
                    A+ ka+G  k +++   +k+lG+K++g+q+v +gnIi+ Qrg+ + pGen+ ++++h ++A+++G+Vk++    ++ +rky+ v
     CCE29166.1  45 ASVKAQGAYKkKTKSGIPKKLGCKRTGDQYVVPGNIIYTQRGSLWWPGENCIMSRNHSIHAMASGYVKYYrdpaRHPNRKYIGV 128
                    67899999883566668*****************************************************77766999***987 PP

>> DUF4288  Domain of unknown function (DUF4288)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   7.3e-06     0.066      16      50 ..     239     274 ..     230     280 .] 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.3e-06
     DUF4288  16 edeqeqfeErlvLvkAdseeeAyekaeklgkee.ee 50 
                 e++++   E++ +v+A s+++A++ a++ +k+  ++
  CCE29166.1 239 EKKRAAWGESTTIVRAVSKKAAKKAAKQAAKKPgKK 274
                 66777788**********************996354 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2093.41
//
Query:       CCE29167.1  [L=155]
Description: uncharacterized protein CPUR_02858 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.035   14.2   0.3      0.046   13.8   0.3    1.1  1  DUF2076   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   2.6e-06     0.046      86     132 ..      44      90 ..      40     105 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-06
     DUF2076  86 ssggFLsglFGggkke......rpqpspqarpaapagqalgqeeqyaaqpgya 132
                 + +gF++++FGg+ ++      ++q   q +++++ + a+++++q      y+
  CCE29167.1  44 AQFGFFDQMFGGHGHDhdhghhNHQHHHQHQQQQNPSDASYYKSQ------YE 90 
                 569***********9954444322222222222222222222222......22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1075  (0.0599587); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1205.82
//
Query:       CCE29168.1  [L=267]
Description: related to Glc8 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-24   86.0   4.5    6.3e-24   85.2   4.5    1.4  1  IPP-2     Protein phosphatase inhibitor 2 (IPP-2)


Domain annotation for each model (and alignments):
>> IPP-2  Protein phosphatase inhibitor 2 (IPP-2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   4.5   3.5e-28   6.3e-24       1     133 []      95     242 ..      95     246 .. 0.72

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 3.5e-28
       IPP-2   1 vkWDEmnilatnhpadkdygtmkIdEPkTPYhrmvdedd..dede.........asdeeekea.eldaeslaekleaaaessekksss..eeee..... 80 
                 +kWDE+n l+ ++  +++++tmkI+EPkTPY++++d+ +  ++de         ++++ ++ + +++  sl+ ++e+ ++ + ++      +e+     
  CCE29168.1  95 LKWDEAN-LYLTE--QERTSTMKINEPKTPYAKHYDPAEdpSDDEldgngsgsaRRTSGGRREdDIPGLSLGDPEEDITQADGTSKITrqPSEKsvhvd 190
                 59*****.66666..45669***************8887664455678888876444444444799999999888555554444433322222256776 PP

       IPP-2  81 .eaeseeeeeedlseeeeeekrreFeekRKaHYnefkavkllkeeleeeedeee 133
                  ++  +e+e + ls+ ee+ek+r+Fe  RK+HY+ +++v++l    e+  d+e+
  CCE29168.1 191 dQSVAAEDELAGLSP-EEREKHRQFEVARKKHYD-MHNVAQLLGAPEFIPDDED 242
                 5444566999999*9.8899**************.9999988888777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2091.56
//
Query:       CCE29169.1  [L=597]
Description: probable UV-endonuclease UVE-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-107  359.4   0.0   1.5e-107  359.0   0.0    1.1  1  UvdE      UV-endonuclease UvdE


Domain annotation for each model (and alignments):
>> UvdE  UV-endonuclease UvdE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.0   0.0  8.2e-112  1.5e-107       4     275 ..     154     455 ..     153     456 .. 0.99

  Alignments for each domain:
  == domain 1  score: 359.0 bits;  conditional E-value: 8.2e-112
        UvdE   4 vclavelrnaspavtlsrtrrlklikrer............................keklkelakaNlkdllkllkynaaygirllRlSSslvPlash 74 
                 +cl+++lr+ +p+v++srt+r+++i ++r                            ++++++l+ +N++d++k++++n +ygi+++RlSS+++P+ash
  CCE29169.1 154 ACLNTYLRVSNPPVFSSRTCRISSILDHRhpledatqpehptknrpdktqepsidrgLKFVQNLGLNNARDIVKMIRWNDKYGIKFMRLSSEMFPFASH 252
                 7************************************************************************************************** PP

        UvdE  75 pevgykletalaeeleevGelakelglRltfHPeqftllnSdrkevtesairdlayHdklldalklaeqq..davliiHvGGkfgdkeaalerfkenik 171
                 p++gy+l  ++a++l e+G++a+elg+Rlt+HP+qft+++S+rkev++ + rdlayHd+ll +l+l +q   dav+i+H+GG+fgdk+a+l+rf+en+ 
  CCE29169.1 253 PDYGYDLS-FAADVLSEAGKVASELGHRLTTHPGQFTQIGSPRKEVVTASFRDLAYHDELLTRLRLSDQLdrDAVMILHMGGTFGDKAATLNRFRENYT 350
                 *******9.************************************************************9999************************** PP

        UvdE 172 rlpdsvkerlvLENDdksytvadlLpvceelniPlVlDyHHhnvld...lreesldeslplveriveTWerkgikqkvHlSepldgkavrahkdrkhad 267
                 +lp  vk+rlvLENDd+s+ v++lLpvceelniPlVlDyHHhn+ +    re++ld+   l +ri +TW+rk+i+qk+H+Sep+   av+++++rkh+ 
  CCE29169.1 351 KLPAGVKKRLVLENDDVSWNVHELLPVCEELNIPLVLDYHHHNIIFdpsIREGTLDVIG-LYDRIKATWTRKNITQKMHYSEPTAA-AVTPRDRRKHSA 447
                 *********************************************988889******99.8***********************99.************ PP

        UvdE 268 rvldllea 275
                 rv +l+++
  CCE29169.1 448 RVRTLPPC 455
                 ******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4291.22
//
Query:       CCE29170.1  [L=474]
Description: related to RMS1-regulatory protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-20   72.3   0.0      1e-19   71.5   0.0    1.4  1  SET              SET domain
    1.7e-07   32.0   1.1    6.4e-07   30.1   0.5    2.3  2  Rubis-subs-bind  Rubisco LSMT substrate-binding


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   1.1e-23     1e-19       1     169 []      40     274 ..      40     274 .. 0.88

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 1.1e-23
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH........................................HTEEEEEXGGXX.GGSX.HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................xxxxxxxxxxxx.xxxx.xxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele........................................aylfslpeapkn.laft.kelak 57 
                 GrG++At+dIp++++++ +p+++i+t+d++  +e                                          +yl+ lp+a+ + +++t +ela+
  CCE29170.1  40 GRGMVATRDIPADTTLFTIPRSAIITPDTSMIKEHLnrstyeshgdqddqqaldswsfliltlmheylqgndslwkNYLDILPDAFDTpMFWTdQELAQ 138
                 9******************************999999****************************9999999999999999998877789999****** PP

                 HHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS..X.....XXHCCCCCHCCCHEEEE.TEEEEEECCC....................GTTGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x.....xxxxxxxxxxxxxxxxx.xxxxxxxxxx....................xxxxxx RF
         SET  58 asastllqklakdqkqaekedtdaalkasskaesdln..a.....skpeagafsaiagysid.aralksgnga....................gplarf 128
                 +++s   +k++kd ++++ +++   + ++  ++ +    +      +   +  s i+ y++d ++++++g+g+                    +p+a++
  CCE29170.1 139 LQGSATSGKIGKDTAEDMFRRRLIPIIRENRHAFKGSedMsaedlVQLAHRMGSTIMAYAFDlESDEQEGGGEgdddadswvedregktlmgmVPMADI 237
                 *********************999988888877777655256665444444449999999995444444444478888888899999999999****** PP

                 CEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 129 lNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                 lN + + N   ++ +  ++++++ +++rd+++G+E+++ Yg
  CCE29170.1 238 LNADAEFNT--HIHH--GENELTATTLRDVRAGDEILNFYG 274
                 **9988888..8888..99*********************8 PP

>> Rubis-subs-bind  Rubisco LSMT substrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.24   2.2e+03      76     102 ..     180     206 ..     131     216 .. 0.60
   2 !   30.1   0.5   7.2e-11   6.4e-07      74     127 ..     391     442 ..     327     444 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.24
  Rubis-subs-bind  76 aaalrllldrckalLsaypttleeDee 102
                      a+ l  l+ r+ +++ ay+  le+De+
       CCE29170.1 180 AEDLVQLAHRMGSTIMAYAFDLESDEQ 206
                      444556666677777777777777776 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 7.2e-11
  Rubis-subs-bind  74 nEaaalrllldrckalLsaypttleeDeellkdadaavtnrerlavqlrvgEkr 127
                       +    ++++++++a  s y++t+ eDeell++ d++   r r+a+ +r+gEkr
       CCE29170.1 391 RDGVLQSVMAEALRAVASRYTSTVAEDEELLRRGDLSS--RHRMAIVVRLGEKR 442
                      445566789999*************************9..*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3507.92
//
Query:       CCE29171.1  [L=343]
Description: uncharacterized protein CPUR_02862 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       177  (0.00987227); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2490.25
//
Query:       CCE29172.1  [L=448]
Description: probable clathrin assembly protein AP47 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-91  305.1   0.0    6.8e-91  304.3   0.0    1.4  2  Adap_comp_sub   Adaptor complexes medium subunit family
    5.9e-08   32.7   0.2    9.9e-08   32.0   0.2    1.4  1  Clat_adaptor_s  Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> Adap_comp_sub  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.55     5e+03     218     241 ..     116     139 ..      95     150 .. 0.71
   2 !  304.3   0.0   7.6e-95   6.8e-91       1     263 [.     156     443 ..     156     444 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.55
                    EEEEEEEET--SS---EEEEEEE- CS
  Adap_comp_sub 218 vsveFkipgftaSgikVeslkvee 241
                      ++F +p++t S+i  e++  e+
     CCE29172.1 116 EMMDFGYPQTTESKILQEYITQES 139
                    678899999999998777777665 PP

  == domain 2  score: 304.3 bits;  conditional E-value: 7.6e-95
                    XXXXXXXXXXXX-EEEEEEEEEEEEEE-TTS-EEEEEEEEEEEEEE---TT-EEEEEE-SS-EE.......--S.SEESEEEEETT-B-TTHHHH- CS
  Adap_comp_sub   1 iswrrkgikykkneiyldviErvsvlvdkkGkilksevqGtiacksklsgmpelklgLndklnk.......ekk.ielddvsfHqcVnldkfeser 88 
                    +swr++gi+y+kne++ldv+E++++lv+ +G++l+se+ G i++k++lsgmpel+lgLndk ++       ++k ie++dv+fHqcV+l++fe++r
     CCE29172.1 156 VSWRSEGIRYRKNEVFLDVVESLNLLVSADGNVLRSEILGAIKMKCYLSGMPELRLGLNDKVMFettgrttRGKsIEMEDVKFHQCVRLSRFENDR 251
                    69*******************************************************************876668********************* PP

                    EEEE---SEEEEEEEEEES--SS--SEEEEEEEEE-TTTSEEEEEEEEEE-S-TT-EEEEEEEEEE--TT-EEEEEEESSTT-EEEEETTEEEEEE CS
  Adap_comp_sub  89 visFiPpdgeftLmrYrlsannvklPfsvkpkvklsgdevrveielklkenfkkkltlenvkisiplpkevsnlaiktskGkakynpeenaleWti 184
                    +isFiPpdgef+Lm+Yrl +++vk+ ++v++ v+ ++  +r+e++lk++++fk+++t++nv++ ip+p +++ ++++t++G+++y pe++a++W+i
     CCE29172.1 252 TISFIPPDGEFELMSYRL-NTQVKPLIWVECVVESHSG-SRIEYMLKARAQFKRRSTANNVEVIIPVPDDADTPRFRTNIGSVHYAPEQSAIVWKI 345
                    ******************.***************9776.********************************************************* PP

                    --EETT-EE..EEEEEEE--------------....................EEEEEEEET--SS---EEEEEEE--.-----EEEEEEEEEEEEE CS
  Adap_comp_sub 185 kklpggnesslsgeleleaesekkeenprdgkl...................vsveFkipgftaSgikVeslkveer.esykpfkwvryvtvsgey 260
                    k++ g++e+++++el l++ +  +e+    ++                    ++v+F+ip+ft+Sgi+V++lk+ e+  +y + +wvry+t+sg++
     CCE29172.1 346 KQFGGQKEFLMRAELGLPSVRGDDEHGGG-MTGgfggsmggvggmgkgakrpIQVKFEIPYFTTSGIQVRYLKITEPkLQYPSLPWVRYITQSGDI 440
                    *********************99998886.2224566666666666667777*************************9****************** PP

                    EE- CS
  Adap_comp_sub 261 eir 263
                    ++r
     CCE29172.1 441 AVR 443
                    998 PP

>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.2   1.1e-11   9.9e-08       3     131 ..       3     131 ..       1     141 [. 0.79

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1.1e-11
                     EEEEEE-TTS-EEEEEES...SSS-CHHHHHHHHHHHHHHHTT-SSS-SEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHH CS
  Clat_adaptor_s   3 kaililnkkgkvrlakfy...tavddkkkqklieevyelvsaRdsklsniveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdky 94 
                      ai+ l+ kgk++la+ y    +++++++  ++    e  s+    +      e+++ +Y r  +LY +   + + n   il  +h+ v+++ +y
      CCE29172.1   3 SAIFFLDLKGKTLLARNYrgdIPMSAVENFPILLSEAEEESSA---VPPCFSHEGINYLYIRHNNLYLLALTKRNTNAAEILLFLHKIVQVFTEY 94 
                     6899999999999999996444555555543333333333332...244567788999************************************* PP

                     CTS-SHHHHHHCHHHHHHHHHCCEETTEES---HHHH CS
  Clat_adaptor_s  95 fgnVceldlvfnfekvylildEivsgGeiletskkev 131
                     f+  +e  +  nf  +y +ldE+++ G  + t+ k +
      CCE29172.1  95 FKALEEESIRDNFVIIYELLDEMMDFGYPQTTESKIL 131
                     ***************************9887766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3304.45
//
Query:       CCE29173.1  [L=583]
Description: related to clock-controlled protein 8 (ccg-8) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-39  135.7  12.2    5.2e-28   98.4   5.7    3.3  3  Opi1          Transcription factor Opi1
  ------ inclusion threshold ------
      0.018   15.6   2.0        2.3    8.8   0.1    2.6  2  Syntaxin-6_N  Syntaxin 6, N-terminal
       0.22   11.0   0.1        5.9    6.4   0.0    2.3  2  DUF2106       Predicted membrane protein (DUF2106)


Domain annotation for each model (and alignments):
>> Opi1  Transcription factor Opi1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00015      0.89      11      48 ..     191     228 ..     181     241 .. 0.81
   2 !   98.4   5.7   8.8e-32   5.2e-28     144     323 ..     282     491 ..     243     499 .. 0.67
   3 !   31.8   0.2   1.5e-11   8.7e-08     375     420 .]     499     544 ..     487     544 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00015
        Opi1  11 vgsavRvYesgkassrvvkYgAelvEssvktiskpvid 48 
                 +g+a  +Y  +k  s+++k gAe vE   + + k+v +
  CCE29173.1 191 IGGASTAYGGAKNFSPRFKTGAEYVEGYLTPLAKTVNS 228
                 567789********************998888877654 PP

  == domain 2  score: 98.4 bits;  conditional E-value: 8.8e-32
        Opi1 144 avledee...pallkstsssstsaaasrstse.........pvderdataatpagslregaptaRsrWqavLleatslAGGlgaalseesmkrLkYCLh 230
                 a+++d +        +        +  rs+s          +    +a + t++ +  ++++ a   Wq  L+    +  Gl++a+s es k+LkYCL+
  CCE29173.1 282 AMVGDFDvspA---AQL-------SDRRSSSAstidtlpayDDMRSPAYSETASLQETPRSSPAHGSWQSRLMT---TTSGLSVAMSAESLKSLKYCLK 367
                 23333333321...222.......222222212222332123334445555666666777788899*******9...667******************* PP

        Opi1 231 wLqyAtAHldaqilvLr.................dfiaalqvipdrs.....sarrrqp..iseealr.....kltevkkdivstiRkvvdvvskYAGg 300
                 wL++ + H+ + i  L+                  ++a+ q+ ++++     ++r+ +     +e++r     k+ ++k d+ +t+ + ++ vskYAGg
  CCE29173.1 368 WLRWTNGHMRHVIGNLKttleeyeqtaevhhatlASLASQQPENEERagdrsAERLTPYdgRTPEQARteltnKINTLKVDVLKTLQETINTVSKYAGG 466
                 **********************************7777777766554111104433322223455555322227889********************** PP

        Opi1 301 aLPepArsrvRgfiLkLPsrW..As 323
                 aLPe+Ar  vR  + +LP+r+  As
  CCE29173.1 467 ALPENARILVRRHLTSLPQRFrvAS 491
                 *******************973344 PP

  == domain 3  score: 31.8 bits;  conditional E-value: 1.5e-11
        Opi1 375 eqlvshgaavvaaqriLslAtEsLDmlrnvtgvvkdsldrAdaWve 420
                  +    +a ++ aq++L lA E+LDm+ ++tgv+++++  A+ W+e
  CCE29173.1 499 RDGNDDSAVQEGAQKVLVLAKEGLDMVTQITGVLDGTIVSAEEWCE 544
                 444566778899*********************************7 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2     0.004        24      20      69 ..     335     399 ..     325     422 .. 0.72
   2 ?    8.8   0.1   0.00039       2.3      40      70 ..     432     463 ..     414     496 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.004
  Syntaxin-6_N  20 lyrrwe.rlledtss.s.............tseeldetrteLrkalrsiewdledLeetvrivek 69 
                    +++w+ rl+++ts  s               + l++t+  +r  +++++++le+ e+t ++  +
    CCE29173.1 335 AHGSWQsRLMTTTSGlSvamsaeslkslkyCLKWLRWTNGHMRHVIGNLKTTLEEYEQTAEVHHA 399
                   67788537666666554667777777777777788999999999999999999999998866554 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00039
  Syntaxin-6_N  40 detrteLrkalrsiewd.ledLeetvrivekn 70 
                   +++rteL +++++++ d l+ L+et+++v+k 
    CCE29173.1 432 EQARTELTNKINTLKVDvLKTLQETINTVSKY 463
                   689************995799*******9984 PP

>> DUF2106  Predicted membrane protein (DUF2106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.001       5.9      72     105 ..     199     232 ..     171     236 .. 0.77
   2 ?    2.0   0.0     0.023   1.4e+02      54      89 ..     383     419 ..     374     431 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.001
     DUF2106  72 aevkaqyPenepalGlvtayltPlsellaettly 105
                 +  k   P++++ + +v +yltPl++++++  + 
  CCE29173.1 199 GGAKNFSPRFKTGAEYVEGYLTPLAKTVNSVGRV 232
                 556677799999***************9987665 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.023
     DUF2106  54 aksplaPydrGGvple.epaevkaqyPenepalGlvt 89 
                  k++l+ y++  ++ + + a++++q Pene+ +G  +
  CCE29173.1 383 LKTTLEEYEQTAEVHHaTLASLASQQPENEERAGDRS 419
                 5788999998876654166999*********999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4174.60
//
Query:       CCE29174.1  [L=945]
Description: uncharacterized protein CPUR_02865 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-06   26.4   1.7    5.4e-06   26.0   0.0    2.1  2  Pkinase         Protein kinase domain
     0.0022   17.6   9.6      0.012   15.2   0.0    3.4  2  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.8      0.39   3.5e+03     222     248 ..     103     129 ..      74     155 .. 0.54
   2 !   26.0   0.0     6e-10   5.4e-06     107     154 ..     854     904 ..     818     917 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.39
                 SHH...HHHTTS-HHHHHHHHHHT-SS CS
     Pkinase 222 etkeklpeaseiseeakdllkkllkkd 248
                 e + +l++a+  +++a+++ kk+ +  
  CCE29174.1 103 ERDRALQQAEAKDRQAQEIAKKMQQAH 129
                 334444444444555555555554433 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 6e-10
                 HHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCS..B CS
     Pkinase 107 ilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesssk..l 154
                  +  l+ +H++g++H+D+   NiL++ +++ ++++DF  a+ +++ ++   
  CCE29174.1 854 GIDTLHAVHKEGVLHCDVRWTNILYSpHTNGIMLIDFERAELFNEPEEdsH 904
                 56789999******************77777***********999886541 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   6.1     0.018   1.6e+02      55     119 ..     106     166 ..     101     327 .. 0.82
   2 !   15.2   0.0   1.4e-06     0.012     148     174 ..     867     893 ..     826     898 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.018
                     EE--TTGGGCHHHHHHHHHHHHHHTTCHH.TTSSSS-HHHHHHHHHHHCCS.TT..ECHHGGCCH CS
  Choline_kinase  55 rtlstedlrepeiskkiAkklaelHsleleseskespslwktmqkwllnkeaqtkakkekkkkql 119
                     r+l++++ ++ +  ++iAkk+++ H+ el + ++  + l + + +    +++q+k++ e+k+ q+
      CCE29174.1 106 RALQQAEAKD-RQAQEIAKKMQQAHEKEL-QAQEIATGLHQVLVRK--REVEQRKQEVEEKHRQV 166
                     5677777777.67899*************.5555555555555554..33344444444333333 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.4e-06
                     E-S--SGGGEEE.-CTTEEEE--GTT- CS
  Choline_kinase 148 cHnDlqegNillnkeekklvlIDFEYa 174
                      H+D+   Nil++ +++ ++lIDFE a
      CCE29174.1 867 LHCDVRWTNILYSPHTNGIMLIDFERA 893
                     5************************66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3253  (0.181438); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                       266  (0.0148363); expected 17.9 (0.001)
Passed Fwd filter:                        76  (0.00423894); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.93u 0.36s 00:00:02.29 Elapsed: 00:00:00.58
# Mc/sec: 4943.19
//
Query:       CCE29175.1  [L=546]
Description: uncharacterized protein CPUR_02866 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-08   34.3   1.6        5.9    7.8   0.0    7.4  7  Ank_3     Ankyrin repeat
    3.4e-08   34.0   0.1    0.00042   20.8   0.0    4.6  5  Ank_2     Ankyrin repeats (3 copies)
    3.9e-07   30.2   0.3      0.096   13.0   0.0    5.7  6  Ank_5     Ankyrin repeats (many copies)
      1e-06   29.2   0.7        1.7    9.3   0.0    5.3  5  Ank_4     Ankyrin repeats (many copies)
    0.00098   19.5   2.7         20    5.8   0.0    5.5  6  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.031   1.1e+02       4      28 ..       3      26 ..       2      29 .. 0.87
   2 ?    2.7   0.0     0.078   2.8e+02       8      27 ..      68      86 ..      64      89 .. 0.78
   3 ?   -0.6   0.0      0.88   3.2e+03       4      15 ..     103     114 ..     101     127 .. 0.76
   4 !    7.8   0.0    0.0016       5.9       2      21 ..     139     158 ..     138     166 .. 0.77
   5 ?    2.2   0.0      0.11   3.9e+02      16      30 ..     238     251 ..     231     252 .. 0.79
   6 ?    5.0   0.0     0.014        49       4      30 ..     306     334 ..     305     335 .. 0.85
   7 ?    2.8   0.0     0.069   2.5e+02       1      16 [.     502     517 ..     502     535 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.031
       Ank_3  4 tpLhlAarsgnleivkfLlenkgad 28
                t Lh+A+  gn  + k Ll+ + a 
  CCE29175.1  3 TSLHFAVFLGNMRLTKTLLD-MKAS 26
                89**********99999999.7776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.078
       Ank_3  8 lAarsgnleivkfLlenkga 27
                lA ++ +++++k+L+e +ga
  CCE29175.1 68 LAFLQSDPDMCKLLVE-HGA 86
                555667889*******.787 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.88
       Ank_3   4 tpLhlAarsgnl 15 
                 ++Lh+Aa    +
  CCE29175.1 103 SILHFAAADRTT 114
                 89****987665 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0016
       Ank_3   2 GetpLhlAarsgnleivkfL 21 
                 ++tpLh+A+ +g++  ++  
  CCE29175.1 139 QYTPLHVALINGCTQGMQIA 158
                 69**********98755555 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.11
       Ank_3  16 eivkfLlenkgadvn 30 
                 e++ fLl+ ++adv+
  CCE29175.1 238 ELIYFLLD-HHADVH 251
                 6899****.8***97 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.014
       Ank_3   4 tpLhlAarsgnle...ivkfLlenkgadvn 30 
                 +pL++++++++ +   + +fL+e +ga ++
  CCE29175.1 306 SPLYHVLHNNKAKpkwLFDFLCE-NGATIH 334
                 79**********555799*****.899886 PP

  == domain 7  score: 2.8 bits;  conditional E-value: 0.069
       Ank_3   1 nGetpLhlAarsgnle 16 
                 +G+tpL l +r g+++
  CCE29175.1 502 HGQTPLELLLRLGSCK 517
                 79**********9994 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.027        98      55      80 ..       3      28 ..       2      31 .. 0.82
   2 !   20.8   0.0   1.2e-07   0.00042       7      81 ..      72     167 ..      65     169 .. 0.73
   3 ?   -0.1   0.0      0.41   1.5e+03      39      52 ..     237     251 ..     197     276 .. 0.56
   4 ?    1.0   0.0      0.18   6.5e+02      11      49 ..     238     291 ..     219     337 .. 0.47
   5 ?    1.7   0.0      0.11   4.1e+02      25      63 ..     459     513 ..     440     536 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.027
       Ank_2 55 tpLhyAarsghleivklLlekgadin 80
                t Lh+A++ g+ ++ k Ll+ +a+++
  CCE29175.1  3 TSLHFAVFLGNMRLTKTLLDMKASLT 28
                88999998899999999997777766 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.2e-07
       Ank_2   7 ngnlelvklLl.eg....adpn....k...ngktaLhyAakngnlei..vklLleh....ad.....ndgrtpLhyAarsghleivklLlekgadinl 81 
                 + +++++klL+ +g    a       +   + +++Lh+Aa    ++    + L +     +d     +  +tpLh+A  +g ++ +++ +e+ga++++
  CCE29175.1  72 QSDPDMCKLLVeHGagreA--TidylHddpEAMSILHFAAADRTTDYrqWQCLFDGfreyIDepspqQFQYTPLHVALINGCTQGMQIAVESGANKEA 167
                 44579******84433332..23344145789*****9999988888667999984445644555557799**********************99876 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.41
       Ank_2  39 leivklLleh.adnd 52 
                 +e++ +Ll+h ad +
  CCE29175.1 237 RELIYFLLDHhADVH 251
                 233455555444433 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.18
       Ank_2  11 elvklLl.egadpn..k..ngktaLh....yAakngnl.eivklLleh.....a 49 
                 el+ +Ll ++ad++  +  n+ +++     ++++  ++  +++ Lle+     +
  CCE29175.1 238 ELIYFLLdHHADVHgtSrwNNSNVVNeivqASTSFHHEdPLARELLEEllsdlV 291
                 566666666666655423433333330000333333332245555554443332 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.11
       Ank_2  25 ngktaLhyAakngnlei....vklLle..h..........adndgrtpLhyAars 63 
                 +g++ +h+ +++   e     + + l+  h           +++g+tpL +  r 
  CCE29175.1 459 EGENMIHLTVRKYVAEScytaADAVLDvlHlrdkgvnmtsPNSHGQTPLELLLRL 513
                 5666666666665444312213444444424444544333336788888765555 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.18   6.5e+02      18      49 ..       3      34 ..       2      39 .. 0.85
   2 ?    0.2   0.0      0.29   1.1e+03      20      42 ..      66      88 ..      61      94 .. 0.81
   3 ?    1.1   0.0      0.15   5.5e+02      11      25 ..      96     110 ..      88     114 .. 0.82
   4 !   13.0   0.0   2.7e-05     0.096      13      53 ..     136     176 ..     131     178 .. 0.90
   5 ?   -1.5   0.0         1   3.6e+03      33      49 ..     240     257 ..     232     262 .. 0.70
   6 !    5.9   0.0    0.0048        17      30      55 ..     482     509 ..     475     510 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.18
       Ank_5 18 tpLhvAakygaadvvrlLlargadlnltdsrG 49
                t Lh+A+  g+ ++ + Ll++ a+l++ +s+ 
  CCE29175.1  3 TSLHFAVFLGNMRLTKTLLDMKASLTIPCSDL 34
                89*****9999999999999999999988875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.29
       Ank_5 20 LhvAakygaadvvrlLlargadl 42
                + +A  +  +d+++lL+++ga +
  CCE29175.1 66 ILLAFLQSDPDMCKLLVEHGAGR 88
                55788888999******999875 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.15
       Ank_5  11 rldgggntpLhvAak 25 
                 + d++ +++Lh+Aa 
  CCE29175.1  96 HDDPEAMSILHFAAA 110
                 678999*******96 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 2.7e-05
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 +++ +tpLhvA  +g+ + +++ ++ ga+  ++  +  t+l
  CCE29175.1 136 QQFQYTPLHVALINGCTQGMQIAVESGANKEARSISICTPL 176
                 67889*******************99999999999999998 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1
       Ank_5  33 rlLl.argadlnltdsrG 49 
                 +++l +++ad   t  ++
  CCE29175.1 240 IYFLlDHHADVHGTSRWN 257
                 555568888888877776 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0048
       Ank_5  30 dvvrlLl..argadlnltdsrGltaldl 55 
                  v+ +L+  + g++ +  +s+G+t+l+l
  CCE29175.1 482 AVLDVLHlrDKGVNMTSPNSHGQTPLEL 509
                 445556699*****************97 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0043        15       3      27 ..       3      27 ..       1      35 [. 0.84
   2 !    6.1   0.1    0.0047        17       5      43 ..      66     109 ..      63     122 .. 0.75
   3 !    9.3   0.0   0.00048       1.7       2      43 ..     140     180 ..     139     186 .. 0.93
   4 ?   -1.4   0.0       1.1   3.8e+03      18      46 ..     284     315 ..     271     318 .. 0.64
   5 ?   -0.5   0.0      0.55     2e+03      18      39 ..     485     507 ..     472     507 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0043
       Ank_4  3 taLhyaaisgrlelvrlLlekgadi 27
                t Lh a+  g+++l + Ll+ +a++
  CCE29175.1  3 TSLHFAVFLGNMRLTKTLLDMKASL 27
                789****************988875 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0047
       Ank_4   5 LhyaaisgrlelvrlLlekgad....inaq.dnrsGetalhiAa 43 
                 +  a+ +++ ++++lL+e+ga     i++  d+ + ++ lh+Aa
  CCE29175.1  66 ILLAFLQSDPDMCKLLVEHGAGreatIDYLhDDPEAMSILHFAA 109
                 5567789999*********9755555666665555777788876 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00048
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAa 43 
                 +t+Lh a i g+++  ++ +e+ga+  a+ ++s  t+l++++
  CCE29175.1 140 YTPLHVALINGCTQGMQIAVESGANKEAR-SISICTPLYMGI 180
                 69***********************9999.999*****9986 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1.1
       Ank_4  18 rlLlekgad..inaqdnrsGet.alhiAakrg 46 
                 + Ll+  +d   n ++++ G++ +l++++ ++
  CCE29175.1 284 EELLSDLVDrgFNIRTPAPGLPsPLYHVLHNN 315
                 44444444455555667777744888887776 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.55
       Ank_4  18 rlLlekgadinaq.dnrsGetal 39 
                 + L+ +++ +n++ +n+ G+t+l
  CCE29175.1 485 DVLHLRDKGVNMTsPNSHGQTPL 507
                 55554444467773355599997 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.016        58       4      28 ..       3      28 ..       2      31 .. 0.84
   2 ?    2.7   0.0     0.055     2e+02      15      25 ..      75      86 ..      56      97 .. 0.82
   3 ?   -3.1   0.0       3.7   1.3e+04       4      10 ..     103     109 ..     102     117 .. 0.71
   4 !    5.8   0.0    0.0057        20       3      17 ..     140     151 ..     139     171 .. 0.76
   5 ?   -0.1   0.0      0.42   1.5e+03       2      27 ..     215     250 ..     214     253 .. 0.70
   6 ?   -0.4   0.0      0.54   1.9e+03       1      21 [.     502     527 ..     502     535 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.016
                BHHHHHHHHTTHHHHHHHHT.TTSTT CS
         Ank  4 TPLHlAatngkkriiklLLh.GAnln 28
                T LH A+  g+ r +k LL+  A+l+
  CCE29175.1  3 TSLHFAVFLGNMRLTKTLLDmKASLT 28
                66*****************4368886 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.055
                HHHHHHHH.TTT CS
         Ank 15 kriiklLL.hGA 25
                ++++klL+ hGA
  CCE29175.1 75 PDMCKLLVeHGA 86
                77********96 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.7
                 BHHHHHH CS
         Ank   4 TPLHlAa 10 
                 + LH Aa
  CCE29175.1 103 SILHFAA 109
                 569*988 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0057
                 BBHHHHHHHHTTHHH CS
         Ank   3 nTPLHlAatngkkri 17 
                 +TPLH+A  ng   +
  CCE29175.1 140 YTPLHVALING---C 151
                 8*****97555...3 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.42
                 SBBHHHHHH............HHTTHHHHHHHH.TTTST CS
         Ank   2 GnTPLHlAa............tngkkriiklLL.hGAnl 27 
                 G+++L lA+            ++     i +LL h A++
  CCE29175.1 215 GDSVLVLAVniyapnpvnqpnMRE---LIYFLLdHHADV 250
                 777777776666666666555455...899999888997 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.54
                 TSBBHHHHHHHHTT.....HHHHHHH CS
         Ank   1 dGnTPLHlAatngk.....kriiklL 21 
                 +G TPL l  + g+     ++ ++lL
  CCE29175.1 502 HGQTPLELLLRLGScksdfAQLVSLL 527
                 59999987555555555667777744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3996.66
//
Query:       CCE29176.1  [L=954]
Description: uncharacterized protein CPUR_02867 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-06   25.9   0.1    1.8e-05   24.2   0.1    1.8  1  Pkinase         Protein kinase domain
    0.00085   19.0   0.0     0.0042   16.7   0.0    2.1  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1     2e-09   1.8e-05     103     149 ..     847     894 ..     799     905 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2e-09
                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESS CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakele 149
                 ++ + +++l+ +H++g++H+D+   N+L++ e++ ++++DF  a+ l+
  CCE29176.1 847 WVDEGVRALKAVHNEGVLHCDVRWGNVLFNsETKGIMVIDFERAELLD 894
                 5667799***********************66666******9998776 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.7e-07    0.0042     149     174 ..     865     890 ..     847     894 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.7e-07
                     -S--SGGGEEE.-CTTEEEE--GTT- CS
  Choline_kinase 149 HnDlqegNillnkeekklvlIDFEYa 174
                     H+D+  gN+l+n+e+k +++IDFE a
      CCE29176.1 865 HCDVRWGNVLFNSETKGIMVIDFERA 890
                     ************************66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2586  (0.144236); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                       196  (0.010932); expected 17.9 (0.001)
Passed Fwd filter:                        58  (0.00323498); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.75u 0.34s 00:00:02.09 Elapsed: 00:00:00.57
# Mc/sec: 5015.87
//
Query:       CCE29177.1  [L=540]
Description: uncharacterized protein CPUR_02868 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.38    9.6  17.3       0.63    8.9  17.3    1.3  1  LMBR1           LMBR1-like membrane protein
       0.91    7.0  42.9        3.9    4.8  42.9    1.8  1  DUF3584         Protein of unknown function (DUF3584)
       0.93    9.6  13.7        2.3    8.3  13.7    1.6  1  Kinesin_assoc   Kinesin-associated
          3    7.4  15.5        4.4    6.9  15.5    1.2  1  AAA_15          AAA ATPase domain


Domain annotation for each model (and alignments):
>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  17.3   0.00014      0.63     196     346 ..      29     194 ..       9     204 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00014
       LMBR1 196 sdldeelkklyfeaaklntekeeaereledllkevkkl.rksisesdplrkyleeilkkvPeeiaeklks....................nenkteesl 273
                 +d+d el++++++++kl+t++++a+rel+d+ k+ ++  r+++++ d          +++ +ei++   +                    +e + ++s 
  CCE29177.1  29 EDRDVELRQYRMRESKLETQRDQATRELSDYIKARAQEdRDRLQQID----------ETCRKEIQQLRDAqaretamhhklskalsqvqeKEYELARSR 117
                 578899***********************998865553033443333..........333333333322233344444555666663332222234444 PP

       LMBR1 274 aklekqlikalqkrertekqwkrllekalelediiknksskekefksses..srrgefakqg.....klkltptleyywa 346
                  ++e++ +++l+ +e++ + +k+ +e     +++ k +++ e+++++ e   ++r+++ kq+     kl ++p + ++++
  CCE29177.1 118 EREEQANKQNLSAQEQKDEAYKKGCEVD---QKLSKMQDELEEALRQAEAlrKERNKALKQRdealkKLQYSPMVNFLVQ 194
                 4444444455555555555555544444...4566666666666666666666667777776543333444444444444 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  42.9   0.00088       3.9     354     514 ..       8     185 ..       1     211 [. 0.74

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.00088
     DUF3584 354 psirseleeleeeldaltekhq..dvq.ekydrrkqkikeeleeeleklker.leaireekdrl...kaaieealeal......esqlrkqleaqkeel 439
                  s+ ++++e+e++++ l+ +++  dv+ ++y  r++k++ ++ ++ ++l +  ++  +e +drl    ++++++ ++l      e ++ ++l ++ +++
  CCE29177.1   8 NSLCRDIQEQERRIEELERHIEdrDVElRQYRMRESKLETQRDQATRELSDYiKARAQEDRDRLqqiDETCRKEIQQLrdaqarETAMHHKLSKALSQV 106
                 55667888888888888887751156667888999999999988888888876667777777766676666666666611111155667888999999* PP

     DUF3584 440 neeekelesrlselklrlds....atateEeleqieeadealekaqeelekaeaevealqaeeeqlrkkrdeadealqk 514
                 +e+e+el+++ +++++  ++      +++E  ++  e d++l+k+q ele+a  + eal +e++++ k+rdea+++lq 
  CCE29177.1 107 QEKEYELARSREREEQANKQnlsaQEQKDEAYKKGCEVDQKLSKMQDELEEALRQAEALRKERNKALKQRDEALKKLQY 185
                 *******9999998776554111145566677788899**************************************985 PP

>> Kinesin_assoc  Kinesin-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  13.7   0.00051       2.3      49     143 ..      55     181 ..       3     185 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00051
  Kinesin_assoc  49 l.................................aseraknlsavtaavaglspssslsalssraesvssleerivfspaseeaierlketekiia 111
                                                      ++++++ +++  +a++ ++ +  + a s + e+    ++++   + ++ea ++  e ++ ++
     CCE29177.1  55 ElsdyikaraqedrdrlqqidetcrkeiqqlrdaQARETAMHHKLSKALSQVQEKEYELARSREREEQ-ANKQNLSAQEQKDEAYKKGCEVDQKLS 149
                    03333333333333333333555445444445433444445556677777777777777777766655.55677889999**************** PP

  Kinesin_assoc 112 elnetWeeklrkteairlereallaelGvair 143
                     + +  ee lr++ea+r er++ l++   a++
     CCE29177.1 150 KMQDELEEALRQAEALRKERNKALKQRDEALK 181
                    ************************98766665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  15.5   0.00098       4.4     108     283 ..      17     192 ..       2     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00098
      AAA_15 108 lkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikkleeslkkee....elknvlksaiiklllisa 202
                  ++ +++l  +i+d++ +l +++   +k + + +++++el ++ +  ++++ + l+  +e+++k i++l+     e     +l++ l++ ++k +    
  CCE29177.1  17 QERRIEELERHIEDRDVELRQYRMRESKLETQRDQATRELSDYIKARAQEDRDRLQQIDETCRKEIQQLRDAQARETamhhKLSKALSQVQEKEYELAR 115
                 34567999***********************************************************99999988887777777777777777777777 PP

      AAA_15 203 kRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelk...kilkkkidkikkfnykgkknee 283
                  R+ +++ ++++ s+ ++++e +++         e+ +kl+++q++l+e+  + ++  k   k lk+  + +kk++y +  n++
  CCE29177.1 116 SREREEQANKQNLSAQEQKDEAYKK-------GCEVDQKLSKMQDELEEALRQAEALRKernKALKQRDEALKKLQYSPMVNFL 192
                 8888777777777777777777777.......4678999999999999998888776667755566655566666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3104  (0.173127); expected 358.6 (0.02)
Passed bias filter:                      826  (0.0460706); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.52
# Mc/sec: 3135.72
//
Query:       CCE29178.1  [L=225]
Description: uncharacterized protein CPUR_02869 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1656.81
//
Query:       CCE29179.1  [L=979]
Description: uncharacterized protein CPUR_02870 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-05   23.9   0.0    6.5e-05   22.4   0.0    1.7  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.023   14.3   0.0      0.023   14.3   0.0    2.4  3  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   7.2e-09   6.5e-05     103     152 ..     870     920 ..     828     931 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 7.2e-09
                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSC CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesss 152
                 ++ + +++l+ +H++g++H+D+   N L++ e++ ++++DF  a+ l+ + 
  CCE29179.1 870 WVDEGVRALKAVHNEGVLHCDVRWGNALFNsETKGIMVIDFERAELLDATG 920
                 6667799***********************66666********99998765 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       0.6   5.4e+03     119     142 ..      13      36 ..       7      66 .. 0.55
   2 ?   -3.3   0.5      0.61   5.5e+03      86     120 ..     235     274 ..     213     304 .. 0.57
   3 ?   14.3   0.0   2.6e-06     0.023     149     174 ..     888     913 ..     875     918 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.6
                     HCCCTHHHHHHHHHTHHHHHHCHG CS
  Choline_kinase 119 lklinledlekelekleklleele 142
                       + ++++le+e+++  k l++ e
      CCE29179.1  13 TLCQRIQNLEREVQEKDKALKQEE 36 
                     334445555555555555553332 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.61
                     TSSSS-HHHHHHHHH.....HHCCS.TT..ECHHGGCCHC CS
  Choline_kinase  86 eskespslwktmqkw.....llnkeaqtkakkekkkkqlk 120
                       +  ++ w+t++        + k+a++++++  +++q  
      CCE29179.1 235 VLEGDRQAWETIRVLkeernRVRKQAEKTDQEADERDQRA 274
                     4555667777777774333322333333333333333333 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 2.6e-06
                     -S--SGGGEEE.-CTTEEEE--GTT- CS
  Choline_kinase 149 HnDlqegNillnkeekklvlIDFEYa 174
                     H+D+  gN l+n+e+k +++IDFE a
      CCE29179.1 888 HCDVRWGNALFNSETKGIMVIDFERA 913
                     ************************66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (979 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2630  (0.14669); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                       175  (0.00976072); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.53u 0.36s 00:00:01.89 Elapsed: 00:00:00.53
# Mc/sec: 5552.63
//
Query:       CCE29180.1  [L=489]
Description: uncharacterized protein CPUR_02871 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.022   14.5   0.1      0.077   12.7   0.1    1.9  1  Regnase_1_C  Endoribonuclease Regnase 1/ ZC3H12 C-terminal do


Domain annotation for each model (and alignments):
>> Regnase_1_C  Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   4.3e-06     0.077       4      22 ..     254     271 ..     252     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.3e-06
  Regnase_1_C   4 deRekVfinLCgiFppdLV 22 
                  ++R  Vf +LC++FppdL 
   CCE29180.1 254 EQR-AVFDELCKVFPPDLL 271
                  444.59***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1843  (0.102794); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3465.41
//
Query:       CCE29181.1  [L=68]
Description: uncharacterized protein CPUR_02873 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 526.30
//
Query:       CCE29182.1  [L=48]
Description: uncharacterized protein CPUR_02874 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.41
# Mc/sec: 354.94
//
Query:       CCE29183.1  [L=952]
Description: uncharacterized protein CPUR_02875 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-06   25.4   0.0    7.9e-06   25.4   0.0    2.1  2  Pkinase         Protein kinase domain
     0.0039   16.8   0.0     0.0039   16.8   0.0    2.9  3  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   1.3         1   9.2e+03     213     247 ..     247     281 ..     227     302 .. 0.59
   2 !   25.4   0.0   8.8e-10   7.9e-06     103     153 ..     843     894 ..     803     904 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 1
                 HHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-S CS
     Pkinase 213 lekilkilgetkeklpeaseiseeakdllkkllkk 247
                  e+  k  + +k++ ++a+ +++e  +ll++ +++
  CCE29183.1 247 QERDKKAQERVKQSQEKARALQQERDKLLRQAWQR 281
                 23333444455566666666666666666666555 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 8.8e-10
                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCS CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesssk 153
                 ++ + +++l+ +H++g++H+D+   N+L++ e++ ++++DF  a+ l+ + +
  CCE29183.1 843 WLDEGVRALKAVHNEGVLHCDVRWGNVLFNsETKGIMVIDFERAELLDATGS 894
                 5666789***********************66666*********99987664 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.13   1.2e+03      85     131 ..      49      94 ..      26     109 .. 0.79
   2 ?   -2.4   2.1      0.34     3e+03      87      87 ..     158     158 ..      77     276 .. 0.59
   3 !   16.8   0.0   4.3e-07    0.0039     149     174 ..     861     886 ..     840     891 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.13
                     TTSSSS-HHHHHHHHHHHCCS.TT..ECHHGGCCHCCCTHHHHHHHH CS
  Choline_kinase  85 seskespslwktmqkwllnkeaqtkakkekkkkqlklinledlekel 131
                     +  +e+++  ++ +++ +++++ + +++  +  ++++i+l +l+   
      CCE29183.1  49 QKAREKDWPIQEGERY-MQEQDSKMQHDLDRAREVHEIELRHLRTRW 94 
                     4678889999999999.667777777788888888888888887665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.34
                     S CS
  Choline_kinase  87 s 87 
                      
      CCE29183.1 158 E 158
                     1 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 4.3e-07
                     -S--SGGGEEE.-CTTEEEE--GTT- CS
  Choline_kinase 149 HnDlqegNillnkeekklvlIDFEYa 174
                     H+D+  gN+l+n+e+k +++IDFE a
      CCE29183.1 861 HCDVRWGNVLFNSETKGIMVIDFERA 886
                     ************************66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (952 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3065  (0.170952); expected 358.6 (0.02)
Passed bias filter:                      718  (0.0400469); expected 358.6 (0.02)
Passed Vit filter:                       265  (0.0147805); expected 17.9 (0.001)
Passed Fwd filter:                        74  (0.00412739); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.80u 0.37s 00:00:02.17 Elapsed: 00:00:00.58
# Mc/sec: 4970.37
//
Query:       CCE29184.1  [L=840]
Description: uncharacterized protein CPUR_02876 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-07   28.6   0.3    2.2e-06   27.3   0.0    1.8  2  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.011   15.7   0.4      0.011   15.7   0.4    3.2  3  APH             Phosphotransferase enzyme family
      0.017   14.7   0.0      0.017   14.7   0.0    2.2  2  Choline_kinase  Choline/ethanolamine kinase
       0.14   12.3   4.1      0.078   13.1   1.1    2.2  2  LAGLIDADG_WhiA  WhiA LAGLIDADG-like domain
        0.5    9.6  13.9       0.41    9.9  12.0    1.8  2  ISG65-75        Invariant surface glycoprotein
        0.9    9.1  20.2        2.7    7.5  20.2    1.8  1  Exonuc_VII_L    Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.9       1.6   4.7e+03     214     214 ..      83      83 ..      29     141 .. 0.51
   2 !   27.3   0.0   7.3e-10   2.2e-06     108     153 ..     747     793 ..     737     809 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.6
                 H CS
     Pkinase 214 e 214
                 e
  CCE29184.1  83 E 83 
                 1 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 7.3e-10
                 HHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCS CS
     Pkinase 108 legleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesssk 153
                 +++l+ +H++g++H+D+  eN+L++ e++ ++++DF  a+ l+  ++
  CCE29184.1 747 IQALKAVHNEGVLHCDVRWENVLFNpETKGIMVIDFERAELLDGPES 793
                 79***********************88888*********99998776 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   4.7       4.2   1.3e+04      94     132 ..      14      49 ..       3      89 .. 0.43
   2 ?   -9.2  14.8         6   1.8e+04      86     150 ..      73     137 ..      41     179 .. 0.63
   3 ?   15.7   0.4   3.5e-06     0.011     158     197 ..     748     786 ..     717     789 .. 0.67

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 4.2
                 HHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCH CS
         APH  94 llealgeflaalhqvdpaalpladflaqdlellrqlesa 132
                 l++ + e+ ++++q    a+ l+ +++++l +++q+ s 
  CCE29184.1  14 LCQLIQELERQIQQR---ARQLQKETDRTLQQAEQIGSI 49 
                 334444444444444...444444444444444333333 PP

  == domain 2  score: -9.2 bits;  conditional E-value: 6
                 HHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC.HHHHHHH CS
         APH  86 lsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselld.lleelee 150
                   ++ql+e+le++    ++l+++  +  +++ ++a+ le++r+++ ++ r+  s+++  ++ ++e+
  CCE29184.1  73 ALEQQLEEALEQIEKQDRKLQRAKRR-ERQSQDEATELEHERDEALWQLRQEMSRFQMeRRDRIER 137
                 44678888888888888888888444.333333335566666666665555555555533333333 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 3.5e-06
                 HH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 158 allpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 + l +   +++lH+D +  N+l++p+   +  viDfe+a 
  CCE29184.1 748 QALKAVHNEGVLHCDVRWENVLFNPETKGI-MVIDFERAE 786
                 3333344699**************555554.5*****985 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.2       1.6   4.9e+03      86     109 ..      32      60 ..       4      97 .. 0.47
   2 ?   14.7   0.0   5.6e-06     0.017     149     174 ..     760     785 ..     744     788 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
                     TSSSS-HHHHHHHHH.....HHCCS.TT. CS
  Choline_kinase  86 eskespslwktmqkw.....llnkeaqtk 109
                      +ke++ + ++ ++      l+++ ++++
      CCE29184.1  32 LQKETDRTLQQAEQIgsilqLVQEGERRN 60 
                     33333333444444343333233333333 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 5.6e-06
                     -S--SGGGEEE.-CTTEEEE--GTT- CS
  Choline_kinase 149 HnDlqegNillnkeekklvlIDFEYa 174
                     H+D+  +N+l+n e+k +++IDFE a
      CCE29184.1 760 HCDVRWENVLFNPETKGIMVIDFERA 785
                     ************************66 PP

>> LAGLIDADG_WhiA  WhiA LAGLIDADG-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.1   2.6e-05     0.078      26      82 ..       3      61 ..       1      71 [. 0.85
   2 ?   -2.1   0.1       1.4   4.2e+03      25      49 ..     108     132 ..     100     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-05
  LAGLIDADG_WhiA 26 ivspdeelaeqlqkllnef..eleakilerrkkyvvylKkaeqIvdlLkiigahesllk 82
                    +++++++ a++l++l++e+  +++ + ++ +k++  +l++aeqI ++L++++  e  ++
      CCE29184.1  3 LSTNEQNEASALCQLIQELerQIQQRARQLQKETDRTLQQAEQIGSILQLVQEGERRNE 61
                    57889999*********88669999*************************987665555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
  LAGLIDADG_WhiA  25 Eivspdeelaeqlqkllnefeleak 49 
                     E+ ++  e++ ql + +++f++e +
      CCE29184.1 108 ELEHERDEALWQLRQEMSRFQMERR 132
                     8888889999999999999987754 PP

>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  12.0   0.00014      0.41      32     135 ..       9     108 ..       6     112 .. 0.79
   2 ?   -3.7   0.0       1.9   5.6e+03      50      83 ..     150     183 ..     144     195 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00014
    ISG65-75  32 eaakaLCalkkladkvreetadyllketkdklayienakekvdyyvekleslleeakekgtltesdaeklkkaceeAkaknkkarekakkalekaekas 130
                 + a+aLC+l + +++  +++a +l ket+++l+++e ++ ++ + v++ e + e+    +  +e+ +  l++++eeA+++++k+++k + a++  +++ 
  CCE29184.1   9 NEASALCQLIQELERQIQQRARQLQKETDRTLQQAE-QIGSILQLVQEGERRNEK---RKRRNEKREAALEQQLEEALEQIEKQDRKLQRAKRRERQSQ 103
                 5699***9987777777*************999875.355555555555555555...566666666669**********************9999999 PP

    ISG65-75 131 kkake 135
                 ++a+e
  CCE29184.1 104 DEATE 108
                 99876 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.9
    ISG65-75  50 etadyllketkdklayienakekvdyyveklesl 83 
                 ++a + l++ +++++ +e++ + v ++++++  l
  CCE29184.1 150 KEARRALQQSEERARGLEQERDTVLQRLQEIDPL 183
                 5667777788888888888888888888877666 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  20.2   0.00089       2.7     135     251 ..      11     129 ..       9     192 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00089
  Exonuc_VII_L 135 Aelvvpdkaeleeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkq...lkkkrerleelkerlk...... 222
                   A+++++ ++ele+q+++ +r+l+k+++r+l++++ ++ ++ + +++ e++ e++++r ++ e+ le++l+++   ++k+ ++l+++k+r +      
    CCE29184.1  11 ASALCQLIQELERQIQQRARQLQKETDRTLQQAE-QIGSILQLVQEGERRNEKRKRRNEKREAALEQQLEEAleqIEKQDRKLQRAKRRERqsqdea 106
                   667777889*********************8765.56666556655555555555555555555555544442226666666666664442233333 PP

  Exonuc_VII_L 223 ekleekk.erlkklkerlelleekkerlee 251
                   ++le+++ e l        +l+++ +r+++
    CCE29184.1 107 TELEHERdEALW-------QLRQEMSRFQM 129
                   111111121112.......22222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2809  (0.156674); expected 358.6 (0.02)
Passed bias filter:                     1049  (0.0585086); expected 358.6 (0.02)
Passed Vit filter:                       170  (0.00948185); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.15u 0.32s 00:00:01.47 Elapsed: 00:00:00.48
# Mc/sec: 5225.82
//
Query:       CCE29185.1  [L=259]
Description: uncharacterized protein CPUR_02877 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      5213  (0.290758); expected 358.6 (0.02)
Passed bias filter:                      959  (0.0534888); expected 358.6 (0.02)
Passed Vit filter:                       455  (0.0253779); expected 17.9 (0.001)
Passed Fwd filter:                       142  (0.00792013); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.86u 0.38s 00:00:02.24 Elapsed: 00:00:00.58
# Mc/sec: 1345.36
//
Query:       CCE29186.1  [L=851]
Description: uncharacterized protein CPUR_02878 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-06   28.2   0.0    1.1e-06   28.2   0.0    2.0  2  Pkinase         Protein kinase domain
     0.0032   17.1   0.1     0.0032   17.1   0.1    3.1  4  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   2.2      0.78     7e+03     207     253 ..     112     158 ..      85     168 .. 0.62
   2 !   28.2   0.0   1.3e-10   1.1e-06     107     154 ..     757     805 ..     653     820 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.78
                 HHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCST CS
     Pkinase 207 ekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRl 253
                  + l+q ++i++ l +++e  ++ +e  +e++++ + l + ++++R+
  CCE29186.1 112 DRALRQAQEIARALLDVHEREQQIQEKRREVQEIATALQEAEKRERV 158
                 33444455555555566666666666677777777777777777665 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 1.3e-10
                 HHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSB CS
     Pkinase 107 ilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskl 154
                     l+ +H+kg++H+D+  +NiL++ +++ ++++DF  a+ +++s+++
  CCE29186.1 757 GTDTLRAVHNKGVLHCDIRWDNILYSpDTKTIMLIDFERAELVHESKPA 805
                 5678999*******************77888************999874 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2      0.67     6e+03     118     142 ..      12      36 ..       6      42 .. 0.74
   2 ?   -0.3   3.1     0.075   6.7e+02      55     115 ..     105     179 ..      90     217 .. 0.57
   3 ?   -2.9   0.0      0.47   4.2e+03      86     101 ..     529     549 ..     512     566 .. 0.64
   4 !   17.1   0.1   3.5e-07    0.0032     148     174 ..     770     796 ..     740     800 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.67
                     CHCCCTHHHHHHHHHTHHHHHHCHG CS
  Choline_kinase 118 qlklinledlekelekleklleele 142
                      +   +++dle+ +++le+ ++e +
      CCE29186.1  12 IFLRQRIQDLEQRMQDLEQRMQERD 36 
                     5556788999999999999987665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.075
                     EE--TTGGGCHHHHHHHHHHHHHHTTCHH.................TTSSSS-HHHHHHHHHHHCCS.TT..ECHHG CS
  Choline_kinase  55 rtlstedlrepeiskkiAkklaelHslel................eseskespslwktmqkwllnkeaqtkakkekk 115
                     r+l++e  r  +  ++iA+ l  +H+ e                 ++  k+++ l ++ +k   ++e  +  ++ ++
      CCE29186.1 105 RALQQERDRALRQAQEIARALLDVHEREQqiqekrrevqeiatalQEAEKRERVLQQERDKL--QQERDRALQEAQD 179
                     567777777778899**********9999554443333333333222222222222222222..2222222222222 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.47
                     TSSSS-HHHHHHHHH.....H CS
  Choline_kinase  86 eskespslwktmqkw.....l 101
                      +++  +++kt+ kw     l
      CCE29186.1 529 LQERRIQVFKTLSKWgmpsrL 549
                     566677899999999444432 PP

  == domain 4  score: 17.1 bits;  conditional E-value: 3.5e-07
                     E-S--SGGGEEE.-CTTEEEE--GTT- CS
  Choline_kinase 148 cHnDlqegNillnkeekklvlIDFEYa 174
                      H+D+   Nil++ ++k+++lIDFE a
      CCE29186.1 770 LHCDIRWDNILYSPDTKTIMLIDFERA 796
                     5************************66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3144  (0.175358); expected 358.6 (0.02)
Passed bias filter:                      815  (0.0454571); expected 358.6 (0.02)
Passed Vit filter:                       225  (0.0125495); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.39u 0.39s 00:00:01.77 Elapsed: 00:00:00.58
# Mc/sec: 4397.16
//
Query:       CCE29187.1  [L=193]
Description: uncharacterized protein CPUR_02879 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-05   22.6   0.1    0.00018   21.3   0.1    1.7  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    0.00011   20.4   0.0    0.00014   20.0   0.0    1.0  1  Herpes_Helicase  Helicase
     0.0017   17.6   0.1     0.0023   17.2   0.1    1.1  1  PIF1             PIF1-like helicase


Domain annotation for each model (and alignments):
>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1     3e-08   0.00018       2      44 ..     115     151 ..     114     155 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3e-08
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTR 44 
                 aya+t+hk+QG   +  +v  ++ a          l Y+av+R
  CCE29187.1 115 AYAITVHKSQGTTLDRAVV--DVSAKDFS----PGLSYVAVSR 151
                 8******************..44443332....3599*****9 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.3e-08   0.00014     721     778 ..     105     161 ..      97     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.3e-08
  Herpes_Helicase 721 cttvDYgissklamtiaksqGlslekvAicFgnhknlklssvYvalsRatdseflvmd 778
                      ct + + ++   a+t+ ksqG+ l++  ++ +++        Yva+sR+   + +++d
       CCE29187.1 105 CTRTQFPLTVAYAITVHKSQGTTLDRAVVDVSAK-DFSPGLSYVAVSRVKTLDGIMFD 161
                      89999999******************99999887.9*************988877776 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   3.8e-07    0.0023     321     359 ..      24      62 ..      10      67 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.8e-07
                 HHHCCTTSS-SCEEE-TT-EEEE-S--CTT-SC-TCEEE CS
        PIF1 321 nslkanglpnhvLkLkvGvpvmllrNldqsaGLcNGtrl 359
                 +s +++g  ++vL + +G+ vml  Nl  ++GL+NG+rl
  CCE29187.1  24 DSQQMAGGLSQVLPICLGARVMLTTNLWIEKGLVNGSRL 62 
                 5556667778999*************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1420.51
//
Query:       CCE29188.1  [L=955]
Description: uncharacterized protein CPUR_02880 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-07   30.0   0.0    7.7e-07   28.7   0.0    1.6  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.045   13.3   0.1      0.045   13.3   0.1    2.7  4  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   8.6e-11   7.7e-07     105     152 ..     859     907 ..     816     923 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 8.6e-11
                 HHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSC CS
     Pkinase 105 kqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesss 152
                  + +++++ +H++g++HrD+  +NiL++ +++ ++++DF  a+ +++ +
  CCE29188.1 859 DEGIQAIDAVHEAGVLHRDVRWANILYNpHTNGIMLIDFERAELFNEPE 907
                 55679***********************77777*********9999876 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   1.0      0.57   5.1e+03      90     150 ..      66     126 ..      57     127 .. 0.56
   2 ?   -3.4   0.1      0.68   6.1e+03     107     149 ..     536     579 ..     528     581 .. 0.71
   3 ?   -3.0   0.0       0.5   4.5e+03      87     108 ..     632     657 ..     616     671 .. 0.60
   4 ?   13.3   0.1     5e-06     0.045     147     174 ..     873     900 ..     846     904 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.57
                     S-HHHHHHHHHHHCCS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHH.HCHGG-EEEE-S CS
  Choline_kinase  90 spslwktmqkwllnkeaqtkakkekkkkqlklinledlekeleklekll.eelespvvfcHn 150
                     +  ++++ qk  +++++ + ++++ ++++ +  + ++ e+ ++k e+ l +e ++ +  +Hn
      CCE29188.1  66 KVRIFEQSQKRQRQNQDSKRQDTKRQDEK-RQRRGQQRERRAAKRERALqQERDHALEQAHN 126
                     55677777777333344444444444444.44444444455555555553777777888888 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.68
                     TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHH.HCHGG-EEEE- CS
  Choline_kinase 107 qtkakkekkkkqlklinledlekeleklekll.eelespvvfcH 149
                     + ++++ + ++++k   ++++++++e+  ++    + + +vf H
      CCE29188.1 536 EVSQSTAMAEERVKHAVTQTYHNMMESCLEFGiLTTGQAIVFLH 579
                     55667777778888888888888888776665467778888877 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.5
                     SSSS-HHHHHHHHH.....HHCCS.TT CS
  Choline_kinase  87 skespslwktmqkw.....llnkeaqt 108
                     +++   ++kt+ kw     +  +++++
      CCE29188.1 632 QERRIRVFKTLSKWgmpsrV-VSSEHR 657
                     56667899999999655431.222222 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 5e-06
                     EE-S--SGGGEEE.-CTTEEEE--GTT- CS
  Choline_kinase 147 fcHnDlqegNillnkeekklvlIDFEYa 174
                       H D+   Nil+n +++ ++lIDFE a
      CCE29188.1 873 VLHRDVRWANILYNPHTNGIMLIDFERA 900
                     56************************66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (955 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2633  (0.146857); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                       180  (0.0100396); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.55u 0.37s 00:00:01.92 Elapsed: 00:00:00.55
# Mc/sec: 5209.39
//
Query:       CCE29189.1  [L=965]
Description: uncharacterized protein CPUR_02881 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-07   30.5   0.0      6e-07   29.1   0.0    1.7  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
       0.04   13.5   0.1       0.04   13.5   0.1    2.6  4  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   6.7e-11     6e-07     103     152 ..     867     917 ..     821     933 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 6.7e-11
                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSC CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesss 152
                 ++ + +e+++ +H++g++HrD+  +NiL++ +++ ++++DF  a+ +++ +
  CCE29189.1 867 WVDEGIEAIDAVHEAGVLHRDVRWANILYNpHTNGIMLIDFERAELFNEPE 917
                 5566789***********************77777*********9999876 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.1     1e+04     107     149 ..     546     589 ..     535     590 .. 0.69
   2 ?   -4.2   0.0       1.2     1e+04      88     101 ..     643     661 ..     633     679 .. 0.59
   3 ?   13.5   0.1   4.5e-06      0.04     145     174 ..     881     910 ..     854     914 .. 0.78
   4 ?   -3.5   0.1       0.7   6.3e+03      77      97 ..     922     942 ..     921     948 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.1
                     TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHH.HCHGG-EEEE- CS
  Choline_kinase 107 qtkakkekkkkqlklinledlekeleklekll.eelespvvfcH 149
                     + +++  + ++++k   ++++++++e+  ++    + + +vf H
      CCE29189.1 546 EVSQSPAMAEERVKHAVTQTYHNMMESCLEFGiLTTGQAIVFLH 589
                     55566667777777777777887777766665467777788877 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.2
                     SSS-HHHHHHHHH.....H CS
  Choline_kinase  88 kespslwktmqkw.....l 101
                     ++   ++kt+ kw     l
      CCE29189.1 643 ERRIRVFKTLSKWgmpsrL 661
                     5556789999999544431 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 4.5e-06
                     EEEE-S--SGGGEEE.-CTTEEEE--GTT- CS
  Choline_kinase 145 vvfcHnDlqegNillnkeekklvlIDFEYa 174
                         H D+   Nil+n +++ ++lIDFE a
      CCE29189.1 881 AGVLHRDVRWANILYNPHTNGIMLIDFERA 910
                     4556************************66 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 0.7
                     HHTTCHH.TTSSSS-HHHHHH CS
  Choline_kinase  77 elHsleleseskespslwktm 97 
                     e H+ e ++++ e++++wk++
      CCE29189.1 922 ESHKEESMPMTAEQSQIWKKI 942
                     56999999999*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (965 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2986  (0.166546); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                       253  (0.0141112); expected 17.9 (0.001)
Passed Fwd filter:                        83  (0.00462937); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.05u 0.42s 00:00:02.46 Elapsed: 00:00:00.66
# Mc/sec: 4411.65
//
Query:       CCE29190.1  [L=174]
Description: uncharacterized protein CPUR_02882 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.082   13.1   0.2       0.51   10.5   0.0    1.9  2  Popeye    Popeye protein conserved region


Domain annotation for each model (and alignments):
>> Popeye  Popeye protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.8e-05      0.51      82     137 ..      12      76 ..       8      86 .. 0.81
   2 ?    0.3   0.0     0.041   7.3e+02      28      50 ..     136     158 ..     128     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.8e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxx RF
      Popeye  82 keleelYkklFqplkvsrkeFkklvseeeakil...........eryLaavfsvligkDiteKlysl 137
                  e +e+++++F++++   +eF +l++ ee+              e ++++ f++ +++ + eKl+s+
  CCE29190.1  12 GEQKEIFEQVFKTIGPDLREFTRLITVEEKA-SnirpiasekelEMFVNTYFENPVRH-VLEKLFSV 76 
                 6889*********************955544.44889999999977777888877754.77777776 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.041
                 xxxxxxxxxxxxxxxxxxxxxxx RF
      Popeye  28 vlrsllvlGflllalwawlvvCa 50 
                 ++ + lvlGf  +++++  + C+
  CCE29190.1 136 IIDISLVLGFDAFVVFSPCTSCT 158
                 577899************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1293.40
//
Query:       CCE29191.1  [L=141]
Description: uncharacterized protein CPUR_02883 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.012   15.4   4.2      0.023   14.5   4.2    1.5  1  DUF3126       Protein of unknown function (DUF3126)
      0.026   14.9   0.2      0.026   14.9   0.2    1.9  2  DUF5634       Family of unknown function (DUF5634)
       0.11   11.9   2.9      0.081   12.3   1.4    1.5  1  DUF99         Protein of unknown function DUF99
       0.13   12.3  16.2      0.021   14.8  12.5    1.5  2  Blo-t-5       Mite allergen Blo t 5
        8.6    7.1   7.8        2.5    8.8   4.5    1.7  2  DUF3139       Protein of unknown function (DUF3139)


Domain annotation for each model (and alignments):
>> DUF3126  Protein of unknown function (DUF3126)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   4.2   6.4e-06     0.023       1      47 [.      81     127 ..      81     133 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.4e-06
     DUF3126   1 EiaklqayLrrtfgneklkvkarpkkddsaEvylgdefiGvifkDee 47 
                 E +kl++ Lr++f+++++kv++ +   +  E +l+d+ + v  kD e
  CCE29191.1  81 EYKKLEDTLRQLFEKKEIKVQEIETVSKKIEAALKDKEMEVQKKDIE 127
                 789*****************************999998877777766 PP

>> DUF5634  Family of unknown function (DUF5634)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.2   7.3e-06     0.026      60      97 ..      53      91 ..      46      92 .. 0.83
   2 ?   -1.7   0.2         1   3.7e+03      67      79 ..     113     125 ..      95     136 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.3e-06
     DUF5634 60 kdeegelalekkeWtvesdep.ekkdkkGyksleevlee 97
                + ++++l+l++keW +++ e+ + k+ + yk+le+ l++
  CCE29191.1 53 RRKTDRLQLQEKEWRIRKSEKrKVKQFREYKKLEDTLRQ 91
                567899**********98765156788********9987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
     DUF5634  67 alekkeWtvesde 79 
                 al++ke  v++ +
  CCE29191.1 113 ALKDKEMEVQKKD 125
                 3334444444443 PP

>> DUF99  Protein of unknown function DUF99
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.4   2.3e-05     0.081     104     154 ..      81     130 ..      75     137 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.3e-05
                 -HHHHHHCCT.TSTTHHHHHHHHHHC.---EEETT....EEEEEESS-HHH CS
       DUF99 104 dlgklekaLrkhfpdeeeRlelieklgerieevektgeelyvravGielee 154
                 + +kle+ Lr+ f+++e +++ ie + ++ie   k ++e+ v+   ielee
  CCE29191.1  81 EYKKLEDTLRQLFEKKEIKVQEIETVSKKIEAALK-DKEMEVQKKDIELEE 130
                 4568****************************999.999****99999988 PP

>> Blo-t-5  Mite allergen Blo t 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.2   4.4e+03      39      49 ..      18      27 ..       3      36 .. 0.46
   2 ?   14.8  12.5   5.8e-06     0.021       5      89 ..      45     131 ..      41     134 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                HHHHHHHHHH- CS
     Blo-t-5 39 seqvkelektk 49
                ++++ke ++t 
  CCE29191.1 18 KQHIKE-NNTT 27
                222222.4444 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.8e-06
                 XXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHH--S..SHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHH CS
     Blo-t-5   5 skkkkDefReefDrllieeleekleklekallklseqvkelektksk..elkeqilreltialnfiegakgflerelkRtDLnllek 89 
                 sk+k D  R++ Drl ++e e ++ k ek  +k   ++k le+t  +  e ke  ++e++ + + ie+a +  e+e+++ D++l ek
  CCE29191.1  45 SKRKIDRSRRKTDRLQLQEKEWRIRKSEKRKVKQFREYKKLEDTLRQlfEKKEIKVQEIETVSKKIEAALKDKEMEVQKKDIELEEK 131
                 56788999***********************************97763355666699***************************998 PP

>> DUF3139  Protein of unknown function (DUF3139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.6   5.9e+03      45      54 ..      18      27 ..       8      32 .. 0.62
   2 ?    8.8   4.5   0.00069       2.5      29      75 ..      75     125 ..      70     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.6
     DUF3139 45 ekgykeddIk 54
                ++++ke++  
  CCE29191.1 18 KQHIKENNTT 27
                3455555443 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00069
     DUF3139  29 pikkylankkldkyl....qekgykeddIksikpkydskkgsyyakVvFKD 75 
                 ++k++  +kkl+++l    ++k +k ++I++ ++k  +      ++V+ KD
  CCE29191.1  75 KVKQFREYKKLEDTLrqlfEKKEIKVQEIETVSKKIEAALKDKEMEVQKKD 125
                 6889***************************99999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3031  (0.169056); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1061.36
//
Query:       CCE29192.1  [L=856]
Description: uncharacterized protein CPUR_02884 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-06   28.3   1.0      3e-06   26.8   0.0    2.2  2  Pkinase         Protein kinase domain
    0.00017   21.3   4.4      0.018   14.6   0.0    3.2  3  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
        7.6    7.0   6.6        2.3    8.7   0.9    3.2  3  FumaraseC_C     Fumarase C C-terminus


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.5      0.25   1.5e+03     102     115 ..     175     188 ..     128     230 .. 0.59
   2 !   26.8   0.0     5e-10     3e-06     107     161 ..     762     817 ..     720     825 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHH CS
     Pkinase 102 kiakqilegleylH 115
                 + +k+i+++le +H
  CCE29192.1 175 RQVKEIAKALEDVH 188
                 12222222222222 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 5e-10
                 HHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCG CS
     Pkinase 107 ilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgts 161
                  +++l+ +H++g++H+D+  +NiL++ ++  ++++DF  a+ ++   + ++   t+
  CCE29192.1 762 GIASLHAVHKQGVLHCDVRWANILYSpHTHGIMLIDFERAELFNAPGSSEEDSHTK 817
                 5678999*******************55555**********999988766555555 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   1.6    0.0023        14      62     139 ..     171     248 ..     152     317 .. 0.53
   2 ?   -2.0   0.0      0.37   2.2e+03     104     149 ..     499     545 ..     480     547 .. 0.79
   3 !   14.6   0.0     3e-06     0.018     146     174 ..     773     801 ..     725     806 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0023
                     GGCHHHHHHHHHHHHHHTTCHH...........................TTSSSS-HHHHHHHHHHHCCS.TT..ECHHGGCCHCCCTHHHHHHH CS
  Choline_kinase  62 lrepeiskkiAkklaelHslel..........................eseskespslwktmqkwllnkeaqtkakkekkkkqlklinledleke 130
                      + ++  k+iAk l+ +H+                                                        + ek+++ l+  + + l++ 
      CCE29192.1 171 YERERQVKEIAKALEDVHEKRRqfqematavlqeqaiasalqkakereR--------------------------QAEKRETALQQERDKALQQA 239
                     45567889***********999666666666666666666666665552..........................33333333333333333333 PP

                     HHTHHHHHH CS
  Choline_kinase 131 lekleklle 139
                      +  ++ le
      CCE29192.1 240 QNGERQALE 248
                     332222222 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.37
                     CS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHH.HCHGG-EEEE- CS
  Choline_kinase 104 keaqtkakkekkkkqlklinledlekeleklekll.eelespvvfcH 149
                       ++  +++ + +k++k+  ++++++++e+  ++    + + +vf H
      CCE29192.1 499 DAEEALQSTATAEKRAKCAVTQTYHNMMESCLEFGiLTTGQAIVFLH 545
                     55667788888999999999999999999887776578888899988 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 3e-06
                     EEE-S--SGGGEEE.-CTTEEEE--GTT- CS
  Choline_kinase 146 vfcHnDlqegNillnkeekklvlIDFEYa 174
                        H+D+   Nil++ +++ ++lIDFE a
      CCE29192.1 773 GVLHCDVRWANILYSPHTHGIMLIDFERA 801
                     456************************66 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.9   0.00038       2.3      11      40 ..     160     189 ..     160     199 .. 0.85
   2 ?   -2.1   0.2      0.89   5.3e+03      20      40 ..     245     265 ..     243     290 .. 0.69
   3 ?   -2.9   0.0       1.6   9.4e+03      27      40 ..     524     537 ..     510     540 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00038
                  HHHHHHHHHHHHHHT--HHHHHHHTT-.-H CS
  FumaraseC_C  11 YekAakIAkeAlkegktlreavlelgllte 40 
                  Y++ ak+ ++A+++ ++++e++ +l+ + e
   CCE29192.1 160 YQELAKVLQQAYERERQVKEIAKALEDVHE 189
                  8888******************99887655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.89
                  HHHHHT--HHHHHHHTT-.-H CS
  FumaraseC_C  20 eAlkegktlreavlelgllte 40 
                  +Al++ + lre  l+   l +
   CCE29192.1 245 QALETARELREERLRASQLER 265
                  678888888887666544444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.6
                  -HHHHHHHTT-.-H CS
  FumaraseC_C  27 tlreavlelgllte 40 
                  +  e +le+g+lt 
   CCE29192.1 524 NMMESCLEFGILTT 537
                  5678999***9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3629  (0.20241); expected 358.6 (0.02)
Passed bias filter:                      855  (0.0476881); expected 358.6 (0.02)
Passed Vit filter:                       266  (0.0148363); expected 17.9 (0.001)
Passed Fwd filter:                        74  (0.00412739); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.81u 0.36s 00:00:02.17 Elapsed: 00:00:00.56
# Mc/sec: 4622.60
//
Query:       CCE29193.1  [L=72]
Description: uncharacterized protein CPUR_02885 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.6   0.1       0.14   12.5   0.1    1.2  1  FAM153    FAM153 family


Domain annotation for each model (and alignments):
>> FAM153  FAM153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   7.9e-06      0.14      81     104 ..      21      44 ..       6      57 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.9e-06
      FAM153  81 edstitgshqqmsaspssapaeea 104
                 +  ti gs+++ sa+p sap+ + 
  CCE29193.1  21 NANTIVGSKRDASAAPDSAPSVKR 44 
                 4579****************8655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 575.00
//
Query:       CCE29194.1  [L=287]
Description: uncharacterized protein CPUR_02886 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2457.82
//
Query:       CCE29195.1  [L=449]
Description: uncharacterized protein CPUR_02887 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   15.0   1.8        8.7    5.8   0.0    4.3  5  LVIVD     LVIVD repeat


Domain annotation for each model (and alignments):
>> LVIVD  LVIVD repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0    0.0042        76       5      17 ..     139     151 ..     137     159 .. 0.88
   2 ?    5.8   0.0   0.00049       8.7      21      38 ..     222     239 ..     219     241 .. 0.89
   3 ?   -2.2   0.0      0.15   2.7e+03      23      37 ..     276     290 ..     272     293 .. 0.80
   4 ?    1.7   0.0     0.009   1.6e+02      25      41 ..     339     355 ..     337     356 .. 0.88
   5 ?   -1.9   0.0      0.12   2.1e+03      15      29 ..     373     387 ..     365     393 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0042
       LVIVD   5 qdvavsGnYaYvA 17 
                 +d++v G  aY+ 
  CCE29195.1 139 RDIKVIGHHAYIS 151
                 69**********6 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.00049
       LVIVD  21 ngLvIvDISNpSsptlkg 38 
                 +gL+I+ + +p++p+l g
  CCE29195.1 222 KGLMIINVKDPAHPVLDG 239
                 89*************976 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.15
       LVIVD  23 LvIvDISNpSsptlk 37 
                 + ++D+ +  +pt +
  CCE29195.1 276 FFVIDVTDHKNPTIV 290
                 6799*9998888876 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.009
       LVIVD  25 IvDISNpSsptlkgsyd 41 
                 I DIS +++p+  g+y+
  CCE29195.1 339 IWDISSLTKPVNTGIYK 355
                 67*********999985 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 0.12
       LVIVD  15 YvAdqdngLvIvDIS 29 
                 Y      gL +vD S
  CCE29195.1 373 YMSNYASGLRVVDAS 387
                 556666799999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3812.31
//
Query:       CCE29196.1  [L=450]
Description: uncharacterized protein CPUR_02888 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00086   18.6   0.1       0.26   10.7   0.0    3.2  3  LVIVD     LVIVD repeat
  ------ inclusion threshold ------
       0.13   12.2   0.8       0.42   10.6   0.1    2.1  3  DAP_B     D-aminopeptidase, domain B


Domain annotation for each model (and alignments):
>> LVIVD  LVIVD repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.094   8.4e+02       5      17 ..     140     152 ..     139     156 .. 0.88
   2 !   10.7   0.0   2.9e-05      0.26      22      38 ..     224     240 ..     221     242 .. 0.90
   3 !    3.4   0.0    0.0053        48      25      40 ..     340     355 ..     339     357 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.094
       LVIVD   5 qdvavsGnYaYvA 17 
                 +d++v G  a++ 
  CCE29196.1 140 RDIKVIGHHAFIS 152
                 69*********96 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 2.9e-05
       LVIVD  22 gLvIvDISNpSsptlkg 38 
                 gL+I+D+ +p++p+l g
  CCE29196.1 224 GLMIIDVKDPTHPVLDG 240
                 8*************965 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.0053
       LVIVD  25 IvDISNpSsptlkgsy 40 
                 I DIS +++p++ g y
  CCE29196.1 340 IWDISSLTKPVMTGVY 355
                 66**********9988 PP

>> DAP_B  D-aminopeptidase, domain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   4.7e-05      0.42      63     139 ..      15      94 ..       4     102 .. 0.67
   2 ?   -1.7   0.0      0.28   2.5e+03      97     127 ..     217     247 ..     202     255 .. 0.85
   3 ?   -2.8   0.0      0.58   5.2e+03      67     112 ..     327     373 ..     308     381 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.7e-05
       DAP_B  63 elrierlkenrtlkarrvkeaekaldkaelaGeyrce..elestleisgeggllYg....afdGfLGkgpvellrylgedvwv 139
                  ++++    n++ +a ++k++ ++  +++ aG +  +  e +s++e+++     Yg    + +G LG+g++ +  + g+d+w 
  CCE29196.1  15 CIHVSS-AANQMSEAMKMKTSFHK--QKQDAGIFDDKqyEAKSNVECKDGRAGEYGcknvNLKGSLGHGDMGSQTREGNDIWG 94 
                 555543.34566666666665444..5556777765511667889999766666763333689*******************6 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.28
       DAP_B  97 rceelestleisgeggllYgafdGfLGkgpv 127
                  c++l+  l i + ++ ++   dG +G+g+ 
  CCE29196.1 217 TCKNLNLGLMIIDVKDPTHPVLDGCMGEGRY 247
                 5888888889999999999999*****9974 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.58
       DAP_B  67 erlkenrtlkarrvkeaekaldkaelaGeyrc..eelestleisgegg 112
                 + ++e+ +lk+r      ++l+k  ++G y++  e ++ +l i++++ 
  CCE29196.1 327 K-RNEDSNLKTRTYIWDISSLTKPVMTGVYEStvEAIDHNLYIKDHTA 373
                 3.3344444444444444455777888888762245677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3346.59
//
Query:       CCE29197.1  [L=226]
Description: related to NonF protein, involved in nonactin biosynthesis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-15   57.1   0.0    4.3e-15   55.9   0.0    1.8  1  DJ-1_PfpI   DJ-1/PfpI family
    0.00011   22.0   0.0    0.00034   20.4   0.0    1.7  1  ThiJ_like   ThiJ/PfpI family-like
     0.0058   16.3   0.0     0.0095   15.6   0.0    1.3  1  Catalase_C  C-terminal domain found in long catalases
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.018   14.6   0.0    1.2  1  GATase_3    CobB/CobQ-like glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   9.7e-19   4.3e-15      58     164 ..      90     223 ..      27     224 .. 0.81

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 9.7e-19
                 TCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEEETTTHHHHHH....TT..TTTTSEE--SGGGHHHH...............HHTTSEE CS
   DJ-1_PfpI  58 kaaeyDalvlpGGragperlrenekvvelvkefaekgklvaaICagpqlLaa....ag..vlkgrrvTsypavkdkl...............ekagaky 135
                 +a e+Da+  pGG+    +l+ ++  ++l+ ef+ +gk+vaa+C+gp++  +     g  ++kgr+vT++++v+++                +k+gak+
  CCE29197.1  90 RAHEFDAIFYPGGHGPMYDLVSDADSIKLIEEFYAAGKPVAAVCHGPIVFRDvtikGGepLVKGRTVTGFTNVEEDQaqltdampflledelKKKGAKF 188
                 4569***********8899****************************98654111132448*************5544667777888888887777777 PP

                 -SS......SEEEETTEEEESSGGGHHHHHHHHHH CS
   DJ-1_PfpI 136 vdk......rvvvdgnlvTsrgpgaaiefalelle 164
                          +vvvdg l+T ++p +a + ++++l+
  CCE29197.1 189 QKAdepwgeKVVVDGHLITGQNPASAKAVGEAILK 223
                 655779999******************99999987 PP

>> ThiJ_like  ThiJ/PfpI family-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   7.6e-08   0.00034       5     137 ..      23     138 ..      20     149 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7.6e-08
   ThiJ_like   5 GydvtevaipwkvlkdagfsveFvtekgkvpkadekllsgikak.llgaskeakdiYkelstleeFkeplslssesFsleeydlvllpGGsdkavrell 102
                 G+   e+a p++vl  +  ++  +++kg v+  d   ++ +k +  +   k++kd++++ + l eF  +          +e+d+++ pGG++++  +l+
  CCE29197.1  23 GWYLPELAHPYDVLAPKA-EIVVASPKGGVAPLDPASVELFKDEsSVRFLKNNKDVWEKTTPLREFVGRA---------HEFDAIFYPGGHGPMY-DLV 110
                 666677777777776553.445577777777777777766665414556677777777777777777775.........589***********98.*** PP

   ThiJ_like 103 eserlhsllveylklvkrekepskvlgaicqgvla 137
                  +    +l++e+        +  k ++a+c+g ++
  CCE29197.1 111 SDADSIKLIEEFY-------AAGKPVAAVCHGPIV 138
                 999999*******.......67899******9765 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.1e-06    0.0095      55     120 ..      90     147 ..      87     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.1e-06
  Catalase_C  55 daveFDaivvadgaeslfsakataasslfpagrplqllldayrhgKpigalGsgaealkaagisae 120
                 +a eFDai+  +g   +          l+++ + ++l+++ y+ gKp++a+ +g  ++++++i+  
  CCE29197.1  90 RAHEFDAIFYPGGHGPMY--------DLVSDADSIKLIEEFYAAGKPVAAVCHGPIVFRDVTIKGG 147
                 7899*****999955555........6899***********************9999998888754 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     4e-06     0.018      11      84 ..      60     135 ..      51     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4e-06
    GATase_3  11 snyt...dldpLeaepevrvrfvplkdeslg..edadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGG 84 
                 + ++    +++L+++++v  +  p  +e +g  ++ d+++ pGg   + dl ++++    + i+e+++ag+pv ++C G
  CCE29197.1  60 ELFKdesSVRFLKNNKDVWEKTTP-LREFVGraHEFDAIFYPGGHGPMYDLVSDAD--SIKLIEEFYAAGKPVAAVCHG 135
                 555554557888888888888888.6666667778****************99998..6789***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1729.41
//
Query:       CCE29198.1  [L=1711]
Description: probable YBT1-Vacuolar, `full-size` ABC protein transporting bile acids [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-56  191.0  23.7    1.4e-31  110.2   7.6    3.3  3  ABC_membrane     ABC transporter transmembrane region
    3.4e-50  170.1   0.0    1.1e-30  106.9   0.0    2.7  2  ABC_tran         ABC transporter
    1.7e-07   30.9   5.7      0.002   17.6   1.6    4.1  3  SMC_N            RecF/RecN/SMC N terminal domain
    1.1e-05   26.0   0.7       0.22   12.0   0.1    2.8  2  AAA_23           AAA domain
    0.00031   20.8   1.2      0.044   13.9   0.1    3.1  3  MMR_HSR1         50S ribosome-binding GTPase
    0.00036   20.5   1.5       0.91    9.4   0.1    2.7  2  RsgA_GTPase      RsgA GTPase
     0.0005   19.7   0.6          1    9.1   0.2    2.7  2  AAA_29           P-loop containing region of AAA domain
    0.00063   18.9   0.0       0.47    9.5   0.0    2.3  2  T2SSE            Type II/IV secretion system protein
    0.00069   19.8   2.0      0.083   13.0   0.1    2.9  2  DUF87            Helicase HerA, central domain
     0.0023   17.3   0.4        1.9    7.7   0.0    2.4  2  Zeta_toxin       Zeta toxin
     0.0031   17.9   0.2       0.15   12.4   0.2    2.9  2  AAA_16           AAA ATPase domain
     0.0062   16.4   0.8         16    5.2   0.2    3.4  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
  ------ inclusion threshold ------
      0.016   14.6   0.3       0.17   11.2   0.1    2.3  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.018   14.6   0.3        2.5    7.6   0.0    3.2  3  AAA_25           AAA domain
      0.044   13.3   0.1        3.7    7.0   0.0    2.3  2  AAA_7            P-loop containing dynein motor region
        0.1   12.7   0.8        6.8    6.7   0.1    2.7  2  Dynamin_N        Dynamin family
       0.14   12.4   0.9        9.7    6.5   0.0    3.3  3  AAA_22           AAA domain
       0.15   11.8   0.1       0.62    9.8   0.0    2.0  2  Sigma54_activat  Sigma-54 interaction domain
       0.15   11.8   2.9        8.1    6.1   0.1    3.2  3  AAA_30           AAA domain
       0.16   11.7   0.8       0.52   10.0   0.0    2.2  3  IstB_IS21        IstB-like ATP binding protein
       0.39    9.6   7.8        1.5    7.7   0.2    2.8  3  TrwB_AAD_bind    Type IV secretion-system coupling protein DN


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1    0.0012         1       2      83 ..     315     396 ..     314     404 .. 0.81
   2 !   79.9   3.9   2.8e-25   2.4e-22      93     273 ..     469     648 ..     468     649 .. 0.97
   3 !  110.2   7.6   1.7e-34   1.4e-31      29     271 ..    1124    1363 ..    1098    1366 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHH CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyll...nvtgerlskrlrrklfkk 83 
                   ++ +++a+l+g+  ++  l+l+ il+ + +  d     +nv+ l++++l ++++i +++  + l    ++ +r++  +  +++ k
    CCE29198.1 315 LFQCFMAVLSGLFTFAPTLLLKAILEYVEE-PDRAP--INVLWLYVIGLPILDTIRSYADGMALwtgRKVCIRVRAIIIGDIYAK 396
                   6789************************87.77777..***********************998444455555555555555555 PP

  == domain 2  score: 79.9 bits;  conditional E-value: 2.8e-25
                   HHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  ABC_membrane  93 dtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsg 189
                   d+ + G+++++++ d  k+ +++++ ++l+  + +++++++++++ +    ++ +l++++l+++v++ +ak ++  +k+ + a++k+ +v++E+l++
    CCE29198.1 469 DQANLGTIINLMSVDSFKIAEITAYLHFLVAAAPTQLIVSVVLLWQVMGLSAIPGLIVMVLLLPVNYGLAKGFNMTSKNIMAATDKRINVTNEVLQN 565
                   67889*****************************************99999********************************************** PP

                   HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 190 irtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                   ir +k+f++e++f + +++++e ++ka +++ ++++   +i ++++ l++++  ++ +tl+ ++ l ++ +++ +slf++l  +
    CCE29198.1 566 IRIIKYFAWEDRFGRTIDEKREAELKALRSRFTLWACAVAIWNSVPVLITFFS-FLVYTLIEKKPLYPSIAFTAISLFMLLRVP 648
                   *****************************************************.88***********************99877 PP

  == domain 3  score: 110.2 bits;  conditional E-value: 1.7e-34
                    HHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHH CS
  ABC_membrane   29 lldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglff 123 
                    ++  + +++ ++++y+  l+++g++ +++a+++  ++ + +  +s++l+ +l+ ++ r+  +ffd ++ G+l++r+++d++ +++ ++ + + ++
    CCE29198.1 1124 FNA-AAASQVNVAYYLFGLAIIGVLGSFAAFVRDVWIFYGSLTASRKLHDRLMGAVTRARFKFFDVTPLGQLMNRFSKDLEAVDQEIAATAIGVL 1217
                    333.3333358999********************************************************************************* PP

                    HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  124 qslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagi 218 
                       l++v++++++ ++ + + ++ ++i  ++++v+ ++ + +++lk+ e+ +++++++ + E+lsg+ t++a+g e++f++    ++++  +  i
    CCE29198.1 1218 SCALSLVVTVVLIAVITPGFLIAAFVIGGIFYFVATFYLRASRDLKRLESVQRSPLFQQFGETLSGMTTIRAYGDERRFIRDNLTKVNTQSRPFI 1312
                    *********************************************************************************************** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.TSSTHHHHHHHHHHHHHHH CS
  ABC_membrane  219 kkaianglligitqllgllsyalalwfGttlvis.gelsvgdlvvflslfailf 271 
                        +n++l  +++llg+l+ + a   G++ ++s g+++ g + + ls+++ ++
    CCE29198.1 1313 YLWACNRWLAFRADLLGNLVSFSA---GVFIILSlGKIDAGAAGISLSYAMNFT 1363
                    *******************99999...***************999999988665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   2.9e-19   2.5e-16       2     135 ..     723     872 ..     722     874 .. 0.84
   2 !  106.9   0.0   1.3e-33   1.1e-30       1     137 []    1432    1618 ..    1432    1618 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 2.9e-19
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTC... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxx... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren.........esdee... 84 
                  +++++++ g++  i G++G+GKS++l+ l+g+++   G++ + g  ++e    ++++ l   i+++ q + l +   +r+n         +   +   
  CCE29198.1 723 MDMNVNFQIGKLNIIAGSTGSGKSSMLMGLLGEMTLVDGRVYCPGGRSREevrpDPETGLADTIAYVAQSAWLVNAN-IRDNilfsapynaQ---Ryrd 817
                 689999***********************************99966666668889999************9999999.*********85541...3334 PP

                 ......HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 ......iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                       +e+ l+ l+    ++t v++++ +LSgGqkqr++laral +++  +l+D++
  CCE29198.1 818 vivacaLERDLEILDH--GDETLVGEKGITLSGGQKQRISLARALYSNSAHILMDDC 872
                 4443334444444443..5599999999***************************97 PP

  == domain 2  score: 106.9 bits;  conditional E-value: 1.3e-33
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79  
                  l+ ++lk+++ +kv+ivG++GaGKS+L+ ++ + l+ + G+i +dg ++ e+ l+ lr++i ++pq+p+lf ++ +r+n                  
  CCE29198.1 1432 LRGINLKIEARQKVGIVGRTGAGKSSLALAIFRALEAETGRIVIDGVNIGEIGLRDLRENITIVPQDPTLFMGT-IRSNldpfdqysdeevfealrr 1527
                  6789**********************************************************************.**********555555555555 PP

                  .........................HHHTCHHHHHHHSTTGG.......................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSS CS
                  .........................xxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   80 .........................esdeeiekalsklglke.......................lkdtvvksspssLSgGqkqrvalarallkkpk 128 
                                           +                                       +  ++v++s+s+LS+Gq+q ++lara+lkkp+
  CCE29198.1 1528 vqligpeeilannsgaaveagdaetT---------------TqqqqqrvassaassimtnknvflDLSSPVTESGSNLSQGQRQLLCLARAMLKKPT 1609
                  55555555555555555555555540...............05555555555555555555666699999*9************************* PP

                  EEEEESTTT CS
                  xxxxxxxxx RF
    ABC_tran  129 llllDEpta 137 
                  +l++DE+ta
  CCE29198.1 1610 VLVMDEATA 1618
                  *******96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0051       4.4      24      44 ..     732     752 ..     711     760 .. 0.74
   2 ?    1.8   0.0      0.16   1.3e+02     136     179 ..     845     884 ..     786     917 .. 0.76
   3 !   17.6   1.6   2.3e-06     0.002      29     209 ..    1447    1656 ..    1435    1663 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0051
                 SSEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAi 44 
                  ++++i G+ GSGKs++l  +
  CCE29198.1 732 GKLNIIAGSTGSGKSSMLMGL 752
                 3599************98765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.16
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkv 179
                 +LSgG+k+ ++la       ++ ++  l+D+  +a D +  + +
  CCE29198.1 845 TLSGGQKQRISLAR----ALYSNSAHILMDDCLSAVDSHTAQWI 884
                 69*****9877764....45777788899999999999887754 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 2.3e-06
                  EEESTTSSHHHHHHHHHHHCTT.TTT......TTTCHCCCCCC--...BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   29 ivGpNGSGKsnlldAilFvLGersak......klrseklsdlihk...skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingk 116 
                  ivG+ G+GKs+l  Ai   L  ++ +      ++ +  l+dl  +     + + +  +++   +d  d+    ++e ++  rrv+  g  e+  n++
  CCE29198.1 1447 IVGRTGAGKSSLALAIFRALEAETGRividgvNIGEIGLRDLRENitiVPQDPTLFMGTIRSNLDPFDQY--SDEEVFEALRRVQLIGPEEILANNS 1541
                  6666666666666666445544444321111122222223332222224455555555555555555554..4555566666666666666666655 PP

                  EE-HHHHHHHHHCTT-STT............................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  117 evtkkevsellesagiske............................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke 185 
                   +  +       +++ ++                             +LS G+++L+ l    A  + k+  + ++De  a +D +  +k+ e ++e
  CCE29198.1 1542 GAAVEAGDAETTTQQQQQRvassaassimtnknvfldlsspvtesgsNLSQGQRQLLCL----ARAMLKKPTVLVMDEATASIDYNTDSKIQETIRE 1634
                  44432222222222222224466888888888888889999999999*********765....66788999999*********************** PP

                  HCTTSEEEEE-SSHHHCCC-SCEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  186 ksknaQfivislreemlekadklv 209 
                   +    +i i++r +++ + d+++
  CCE29198.1 1635 LT--GTVITIAHRLQTIVDYDRVL 1656
                  **..889******99988887765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00045      0.38      14      38 ..     726     751 ..     716     757 .. 0.80
   2 !   12.0   0.1   0.00026      0.22      23      50 ..    1446    1473 ..    1433    1509 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00045
      AAA_23  14 eidF.skgltlItGpNGaGKTTildA 38 
                 +++F   +l++I G +G+GK++ l  
  CCE29198.1 726 NVNFqIGKLNIIAGSTGSGKSSMLMG 751
                 56665458**************9865 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00026
      AAA_23   23 lItGpNGaGKTTildAiklaLygetprl 50  
                   I+G +GaGK+++  Ai  aL  et+r 
  CCE29198.1 1446 GIVGRTGAGKSSLALAIFRALEAETGRI 1473
                  6*******************98877765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.053        45       3      26 ..     736     759 ..     735     815 .. 0.82
   2 !   13.9   0.1   5.1e-05     0.044       1      28 [.    1444    1472 ..    1444    1482 .. 0.88
   3 ?   -1.9   0.1         4   3.4e+03      23      57 ..    1544    1582 ..    1536    1644 .. 0.47

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.053
                 EEEESTTSSHHHHHHHHHTSTEEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaiv 26 
                 +i+G + +GKS+++  l+ge   v
  CCE29198.1 736 IIAGSTGSGKSSMLMGLLGEMTLV 759
                 589************999975544 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5.1e-05
                  EEEEEESTTSSHHHHHHHHHTS.TEEESS CS
    MMR_HSR1    1 evaivGrpNvGKStLinaltge.kaivsd 28  
                  +v+ivGr+ +GKS+L  a++++ +a++++
  CCE29198.1 1444 KVGIVGRTGAGKSSLALAIFRAlEAETGR 1472
                  69*****************9987777765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4
                  TEEESSSTTSSSSEEEEEEE.....ETTEEEEEEECGGCS CS
    MMR_HSR1   23 kaivsdkpgtTrdinegrvk.....lkgkeielvDtpGli 57  
                  +++++d   tT++ +++  +     +  ++ +++D+    
  CCE29198.1 1544 AVEAGDAETTTQQQQQRVASsaassIMTNKNVFLDLSS-P 1582
                  45666777777777666544444442234457777766.3 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1    0.0011      0.91      99     125 ..     732     758 ..     708     771 .. 0.85
   2 !    9.2   0.0    0.0012         1     100     130 ..    1443    1473 ..    1418    1477 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
                  TSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelel 125
                  +k+ +++G++G GKS+++  ll+e++l
   CCE29198.1 732 GKLNIIAGSTGSGKSSMLMGLLGEMTL 758
                  4899***************99999876 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0012
                   SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  100 ktsvlvGqSGvGKStLinallpelelktgev 130 
                   + + +vG +G+GKS+L  a+   le++tg +
   CCE29198.1 1443 QKVGIVGRTGAGKSSLALAIFRALEAETGRI 1473
                   556699**************99999999987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.2    0.0012         1      19      39 ..     729     749 ..     721     753 .. 0.80
   2 !    8.0   0.0    0.0028       2.4      18      46 ..    1438    1466 ..    1432    1473 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0012
      AAA_29  19 idlkgatlltGpsGsGKSTll 39 
                 ++     +++G +GsGKS++l
  CCE29198.1 729 FQIGKLNIIAGSTGSGKSSML 749
                 55445789**********997 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0028
      AAA_29   18 eidlkgatlltGpsGsGKSTllDAiqalL 46  
                  +i+ ++ + ++G++G+GKS+l  Ai   L
  CCE29198.1 1438 KIEARQKVGIVGRTGAGKSSLALAIFRAL 1466
                  5565567889**********977776655 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0033       2.8     132     156 ..     735     759 ..     722     765 .. 0.83
   2 !    9.5   0.0   0.00055      0.47      76     162 ..    1388    1475 ..    1351    1480 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0033
       T2SSE 132 ilvsGgTgsGKttllyallkeinks 156
                  +++G TgsGK+ +l  ll e+   
  CCE29198.1 735 NIIAGSTGSGKSSMLMGLLGEMTLV 759
                 589************9999987655 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00055
       T2SSE   76 kgvrlrvvllPvvagealviRkksakeltlddlgae.ealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivt 162 
                  +  +l+  ++P+v++++ +   +++ ++++ d+  + +++ + + + ++  +++r+ + + G Tg GK+ l+ a+   +++++ riv+
  CCE29198.1 1388 EYLDLEQEAAPIVEKNRPAASWPDKGNVEFVDYTTRyREDLDPVLRGINLKIEARQKVGIVGRTGAGKSSLALAIFRALEAETGRIVI 1475
                  556667777777777666666566666666666654144557788999999*******************************999985 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.027        23      28      46 ..     737     755 ..     725     763 .. 0.79
   2 !   13.0   0.1   9.7e-05     0.083      23      57 ..    1442    1475 ..    1433    1476 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.027
       DUF87  28 ilgsTGsGKSntvavLlee 46 
                 i gsTGsGKS     Ll e
  CCE29198.1 737 IAGSTGSGKSSMLMGLLGE 755
                 88*******9876666655 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 9.7e-05
       DUF87   23 trHlAilgsTGsGKSntvavLleellekkgatili 57  
                  ++ ++i+g+TG+GKS ++  +++ l     ++i+i
  CCE29198.1 1442 RQKVGIVGRTGAGKSSLALAIFRALE-AETGRIVI 1475
                  6789**************99999887.66777766 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0022       1.9      17      41 ..     733     757 ..     722     767 .. 0.86
   2 !    7.1   0.1    0.0035         3      21      50 ..    1447    1476 ..    1436    1480 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0022
  Zeta_toxin  17 klillgGqpGAGKselaellkdele 41 
                 kl +++G++G+GKs+++  l  e++
  CCE29198.1 733 KLNIIAGSTGSGKSSMLMGLLGEMT 757
                 6789************999999886 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0035
  Zeta_toxin   21 lgGqpGAGKselaellkdelerqgnvvrld 50  
                  ++G +GAGKs+la ++ ++le++ + +++d
  CCE29198.1 1447 IVGRTGAGKSSLALAIFRALEAETGRIVID 1476
                  789*****************9777777776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.34   2.9e+02      28      45 ..     736     753 ..     726     839 .. 0.88
   2 !   12.4   0.2   0.00018      0.15      29     144 ..    1447    1616 ..    1436    1638 .. 0.54

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.34
      AAA_16  28 llsGesGvGKsslvrell 45 
                 ++ G  G+GKss++  ll
  CCE29198.1 736 IIAGSTGSGKSSMLMGLL 753
                 689*********997665 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00018
      AAA_16   29 lsGesGvGKsslvrellralekd................................ggiflrgkcdqlesaipy.sa.laqalareellrqllde... 88  
                  ++G  G GKssl+ +++rale++                                 + ++r + d +     y +  + +al r +l+     e   
  CCE29198.1 1447 IVGRTGAGKSSLALAIFRALEAEtgrividgvnigeiglrdlrenitivpqdptlFMGTIRSNLDPF---DQYsDEeVFEALRRVQLIGP---Eeil 1537
                  89*********************87777777777766666666544444443322111133333333...22222234555544333332...1332 PP

      AAA_16   89 .......aesaeleawrekleeala..........avpelagaea.....................srllellkrll..allsrderplvlvlDdl 144 
                                          +          +++ +a+++a                     s l +  ++ll  a++   ++p+vlv+D++
  CCE29198.1 1538 annsgaaV----------------EagdaetttqqQQQRVASSAAssimtnknvfldlsspvtesgSNLSQGQRQLLclARAML-KKPTVLVMDEA 1616
                  32221111................011122223332333333333445555555555555555555555555555554344444.56899999876 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.16   1.4e+02       1      19 [.     734     752 ..     734     763 .. 0.90
   2 ?    5.2   0.2     0.019        16       3      24 ..    1446    1467 ..    1445    1581 .. 0.82
   3 ?    4.8   0.0     0.024        21     236     281 ..    1589    1635 ..    1586    1650 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.16
      AAA_21   1 lnvliGpNgsGKSnLLdal 19 
                 ln++ G  gsGKS+ L  l
  CCE29198.1 734 LNIIAGSTGSGKSSMLMGL 752
                 79***********988777 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.019
      AAA_21    3 vliGpNgsGKSnLLdaldllar 24  
                  +++G+ g+GKS+L  a+  +  
  CCE29198.1 1446 GIVGRTGAGKSSLALAIFRALE 1467
                  69**************955432 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.024
      AAA_21  236 elSdGtkrllalltallralkkgsllliDEpEngLHP....kllrrllel 281 
                  +lS+G+++ll+l+ a+l  +   ++l+ DE  +++++    k+++++ el
  CCE29198.1 1589 NLSQGQRQLLCLARAMLKKP---TVLVMDEATASIDYntdsKIQETIREL 1635
                  69***************877...*******99999998888777777654 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0002      0.17      27      60 ..     723     753 ..     714     758 .. 0.80
   2 ?    0.5   0.0      0.38   3.2e+02      42      54 ..    1445    1457 ..    1427    1466 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
                   TS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  27 sgnplvldlkkmashllvaGatgsGKStalntLi 60 
                   ++ ++ +++ k     ++aG+tgsGKS +l+ L+
    CCE29198.1 723 MDMNVNFQIGKLN---IIAGSTGSGKSSMLMGLL 753
                   5666666666666...9**************997 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.38
                    EEEE--TTSSHHH CS
  FtsK_SpoIIIE   42 llvaGatgsGKSt 54  
                    + ++G+tg GKS 
    CCE29198.1 1445 VGIVGRTGAGKSS 1457
                    469*********7 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.4   1.2e+03     106     148 ..      82     126 ..      63     140 .. 0.79
   2 ?    7.6   0.0     0.003       2.5      33      58 ..     732     757 ..     728     771 .. 0.88
   3 ?    2.6   0.0     0.099        85      35      55 ..    1444    1464 ..    1427    1475 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.4
      AAA_25 106 ldlagveslpLfakdrggtlltadvdaleaaieeveg...vrlvvi 148
                 ld+++ ++l L +++++g+l++ad  + +++ +++e    v+lvvi
  CCE29198.1  82 LDIDR-GRLALSKTISRGSLVEADAPHGQRVSQSIEVlavVGLVVI 126
                 44434.578899999****************999988777788887 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.003
      AAA_25  33 gelallaGapgtGKttlaldlalava 58 
                 g+l+++aG +g+GK+ +++ l  +++
  CCE29198.1 732 GKLNIIAGSTGSGKSSMLMGLLGEMT 757
                 7899****************998888 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.099
      AAA_25   35 lallaGapgtGKttlaldlal 55  
                   + ++G++g+GK+ lal +  
  CCE29198.1 1444 KVGIVGRTGAGKSSLALAIFR 1464
                  55689***********98765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.048        41      31      57 ..     730     756 ..     718     760 .. 0.81
   2 ?    7.0   0.0    0.0044       3.7      27      60 ..    1436    1469 ..    1433    1476 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.048
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkl 57 
                 + +k  ++ G+tG+GK+++++ ll ++
  CCE29198.1 730 QIGKLNIIAGSTGSGKSSMLMGLLGEM 756
                 556667899**********99988766 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0044
       AAA_7   27 elllknkkpvllvGptGtGKtviikdllkkldke 60  
                  +l ++++++v +vG tG GK++++  ++++l+ e
  CCE29198.1 1436 NLKIEARQKVGIVGRTGAGKSSLALAIFRALEAE 1469
                  56688999****************9999999866 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1     0.008       6.8       3      28 ..     737     762 ..     736     768 .. 0.87
   2 ?    3.4   0.1     0.082        70       1      18 [.    1445    1462 ..    1445    1467 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.008
                 EEEBTTTTHHHHHHHHHTS--S---S CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedilprgp 28 
                 + Gs+ sGKSS+l  Llge  l+ g 
  CCE29198.1 737 IAGSTGSGKSSMLMGLLGEMTLVDGR 762
                 679****************9988775 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.082
                  EEEEEBTTTTHHHHHHHH CS
   Dynamin_N    1 iavvGsqSsGKSSvlnaL 18  
                  + +vG + +GKSS++ a+
  CCE29198.1 1445 VGIVGRTGAGKSSLALAI 1462
                  679**********98776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.73   6.2e+02       9      22 ..     736     749 ..     732     777 .. 0.81
   2 ?    6.5   0.0     0.011       9.7      10      32 ..    1447    1469 ..    1440    1507 .. 0.82
   3 ?    0.9   0.1      0.58   4.9e+02      47     113 ..    1566    1633 ..    1535    1650 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.73
      AAA_22   9 vvtGesGtGKTtll 22 
                 ++ G +G+GK+  l
  CCE29198.1 736 IIAGSTGSGKSSML 749
                 799*******9876 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.011
      AAA_22   10 vtGesGtGKTtllrrlleqldee 32  
                  ++G +G+GK+ l+  +++ l++e
  CCE29198.1 1447 IVGRTGAGKSSLALAIFRALEAE 1469
                  89**************9999643 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.58
      AAA_22   47 lpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh.lr...seealeeLr 113 
                  ++s ++ k+++ +l + +++++++   + ++ l  l++a+ ++    +l+ DEa   ++     ++ e++r
  CCE29198.1 1566 ASSIMTNKNVFLDLSSPVTESGSN-LSQGQRQLLCLARAMLKKP--TVLVMDEATAsIDyntDSKIQETIR 1633
                  444455555555555555555555.3333333344444555554..5*******88665653244444444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.1   2.6e+03      26      37 ..     736     747 ..     722     751 .. 0.85
   2 ?    9.8   0.0   0.00072      0.62      10      54 ..    1430    1474 ..    1422    1490 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.1
                      EEECSTTSSHHH CS
  Sigma54_activat  26 litGesGtGKel 37 
                      +i G +G+GK+ 
       CCE29198.1 736 IIAGSTGSGKSS 747
                      699*******86 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00072
                       HHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EE CS
  Sigma54_activat   10 elleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfv 54  
                        +l+ i+  ++ + +v i+G +G+GK+ la ai++a + +++++v
       CCE29198.1 1430 PVLRGINLKIEARQKVGIVGRTGAGKSSLALAIFRALEAETGRIV 1474
                       566677777888999********************9888777665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0       0.1        86      19      38 ..     733     752 ..     728     792 .. 0.85
   2 ?    6.1   0.1    0.0095       8.1      21      50 ..    1445    1474 ..    1437    1491 .. 0.86
   3 ?    0.9   0.2      0.39   3.3e+02      81     123 ..    1566    1643 ..    1519    1648 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.1
      AAA_30  19 rvavltGpAGtGKttalkal 38 
                 ++ ++ G  G+GK+ +l +l
  CCE29198.1 733 KLNIIAGSTGSGKSSMLMGL 752
                 4899***********99876 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0095
      AAA_30   21 avltGpAGtGKttalkalreaweaaggrvi 50  
                  + ++G+ G+GK+ +  a+ +a+ea+ gr++
  CCE29198.1 1445 VGIVGRTGAGKSSLALAIFRALEAETGRIV 1474
                  6799**************999999965655 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.39
      AAA_30   81 k..................................grarlepgtllivDEagmv.dtkqlaallkaaekagakvilvG 123 
                  +                                  +ra l++ t+l+ DEa    d ++  ++ + +++   +vi + 
  CCE29198.1 1566 AssimtnknvfldlsspvtesgsnlsqgqrqllclARAMLKKPTVLVMDEATASiDYNTDSKIQETIRELTGTVITIA 1643
                  1223333345555556666666666666678888877889999*******9753377777777777777767776665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       4.2   3.6e+03      51      64 ..     736     749 ..     731     760 .. 0.83
   2 ?   10.0   0.0   0.00061      0.52      44      69 ..    1439    1464 ..    1400    1475 .. 0.72
   3 ?   -3.5   0.0       8.6   7.4e+03     105     135 ..    1604    1633 ..    1592    1656 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.2
   IstB_IS21  51 vllGpsGvGKshla 64 
                 ++ G +G GKs + 
  CCE29198.1 736 IIAGSTGSGKSSML 749
                 789*******9765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00061
   IstB_IS21   44 iekkenivllGpsGvGKshlaialgv 69  
                  ie+++ + ++G +G+GKs la a+ +
  CCE29198.1 1439 IEARQKVGIVGRTGAGKSSLALAIFR 1464
                  8999*******************965 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 8.6
   IstB_IS21  105 rllkvdllilDdlgllpldqaeaellfevie 135 
                   l k+++l++D+  +  +d +  +++ e i 
  CCE29198.1 1604 MLKKPTVLVMDEA-TASIDYNTDSKIQETIR 1633
                  4667788888885.34555555555555554 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.7    0.0089       7.6      19      39 ..     736     756 ..     732     763 .. 0.88
   2 ?    7.7   0.2    0.0017       1.5      15      48 ..    1442    1475 ..    1431    1479 .. 0.86
   3 ?   -2.2   0.1       1.7   1.5e+03     154     186 ..    1548    1580 ..    1534    1589 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0089
  TrwB_AAD_bind  19 livGttGsGKtqalekllrai 39 
                    +i+G+tGsGK+ +l +ll ++
     CCE29198.1 736 IIAGSTGSGKSSMLMGLLGEM 756
                    699**************9876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0017
  TrwB_AAD_bind   15 tqhilivGttGsGKtqalekllrairargdraiv 48  
                     +q++ ivG tG+GK+  + ++ ra++a   r+++
     CCE29198.1 1442 RQKVGIVGRTGAGKSSLALAIFRALEAETGRIVI 1475
                     67899***********************999887 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.7
  TrwB_AAD_bind  154 teaaalvaeeaertaasiratlatnlevlelLa 186 
                       a+++++++++r+a+s  + ++tn +v+  L 
     CCE29198.1 1548 GDAETTTQQQQQRVASSAASSIMTNKNVFLDLS 1580
                     567888999999999999999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1098  (0.0612416); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.16u 0.31s 00:00:01.47 Elapsed: 00:00:00.48
# Mc/sec: 10754.17
//
Query:       CCE29199.1  [L=476]
Description: probable endoplasmic reticulum insertion protein SEC61 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-71  240.3   8.7    3.6e-71  239.9   8.7    1.1  1  SecY             SecY translocase
    3.3e-17   62.0   0.2      1e-16   60.5   0.2    1.9  1  Plug_translocon  Plug domain of Sec61p


Domain annotation for each model (and alignments):
>> SecY  SecY translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.9   8.7   4.1e-75   3.6e-71       1     305 [.      76     457 ..      76     458 .. 0.83

  Alignments for each domain:
  == domain 1  score: 239.9 bits;  conditional E-value: 4.1e-75
                 BTTSSTCHHHHHHHHHHHHH.HHHSSSSSSTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..........HH.HHHHHHHHHHHHHHHHHHHH CS
        SecY   1 sifaLGImPyitasIilqLl.tvvipkleelkkegeegrkkinqitryltvvlalvqalgialslg..........lalllivlqltagtvllmwLgEq 88 
                 ++++LGI+P+i++++++qLl ++   ++  ++ + +++r+++++++++++++l++ +a++++++ g          ++++l++lql+++++++++L+E+
  CCE29199.1  76 TLMELGITPIISSGMVFQLLaGT---HMIDVNLDLKSDRELYQTAQKLFAFILSAGTATVYVFT-GlygppsdlgaGIVFLLILQLVVAGMIVILLDEL 170
                 89******************887...5566665699************************8865.5689*******779******************** PP

                 HHH.HSSTTHHHHHHHHHHHHHHC.CHSS.................-HHHH............SS........THHHHHHHHHHHHHHHHHCHHHHBEE CS
        SecY  89 ite.kGiGnGisllifagivarlp.kals.................gliel............ale......gilallllllvtllvillvvyveeaer 150
                 +++ +G+G+Gisl+i+++i+++++ ka+s                     l            a        + l+++++ll+t+lv+++v+y++ +++
  CCE29199.1 171 LQKgYGLGSGISLFIATNICESIMwKAFSpttintgrgpefegaviA---LfhllmtwpnkqrA-LqeafyrQNLPNIMNLLATILVFVAVIYLQGFRV 265
                 *****************************766666666655544431...15555555555551.0455667669************************ PP

                 EECBBBSTT....S.S-EEEEETTCCCSCHHHHHHHHHHHHHCCCCS..........................................TCCCS..THH CS
        SecY 151 ripvqyakrgrkggqssylPlklnyagviPiIfassllalpstiaqfl.........................................lalls..psv 206
                 +ipv+++++   +g+++ +P++l+y++++Pi+++s+l +    i q+l                                             +   ++
  CCE29199.1 266 EIPVKSSRQ---RGARGSYPVRLFYTSNMPIMLQSALSSNVFLISQMLysrfsenllvqlfgvweakdgasqlhavsgiayymspplnfK---DalLDP 358
                 *******55...59*************************555554444555566666666677777777766666666555555554431...144345 PP

                 HHHHHHHHHHHH....HHHHHHTCT.THHHHHHHCCHHTBSSSCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS.TT.TTHHHHHHHHH CS
        SecY 207 lyvvlyvlliif....Fayfyteit.fnpkevaenlkksggfipgirpgketakyLekvlsritliGalflaliavlpdllgasligafggtslLivVg 300
                 +++++y++ +++    F+++++e++ ++p++va++lk++g ++ g+r+ +++ k+L++++++++++G++++++++v +dl+ga  +g  +gt+ L++V+
  CCE29199.1 359 IHTAVYIIYMLGacalFSKTWIEVSgSSPRDVAKQLKDQGLVMAGHRD-QSMYKELKRIIPTAAAFGGACIGALSVASDLMGA--LG--SGTGTLLAVT 452
                 7888888888888888*******************************8.8*********************************..87..********** PP

                 HHHHH CS
        SecY 301 valet 305
                 +++ +
  CCE29199.1 453 IIYGY 457
                 **976 PP

>> Plug_translocon  Plug domain of Sec61p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.2   1.1e-20     1e-16       1      35 []      41      75 ..      41      75 .. 0.99

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 1.1e-20
                     HHHHHHCCSB-TT--SSS-TCCHTTTCCCCTSSTT CS
  Plug_translocon  1 llYlvlsqiPLyGissssssDpfywlRaifAsnrG 35
                     l++lv+sq PLyGi+ss+ sDp+ywlR+++AsnrG
       CCE29199.1 41 LIFLVMSQMPLYGIVSSDNSDPLYWLRMVMASNRG 75
                     7*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3487.20
//
Query:       CCE29200.1  [L=477]
Description: related to tRNA isopentenyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-64  218.2   0.2    1.9e-64  217.6   0.2    1.2  1  IPPT            IPP transferase
    0.00021   20.7   0.0     0.0018   17.8   0.0    2.1  2  IPT             Isopentenyl transferase
     0.0005   20.3   0.4     0.0047   17.1   0.1    2.7  2  AAA_33          AAA domain
    0.00099   19.3   0.1     0.0018   18.5   0.1    1.5  1  zf-C2H2_jaz     Zinc-finger double-stranded RNA-binding
     0.0067   16.8   0.1      0.021   15.2   0.0    2.0  1  AAA_16          AAA ATPase domain
     0.0073   16.9   0.0        0.1   13.1   0.0    2.6  2  AAA_18          AAA domain
  ------ inclusion threshold ------
      0.012   15.9   0.0        2.3    8.4   0.0    2.7  2  AAA_28          AAA domain
      0.019   15.3   0.2      0.038   14.3   0.2    1.4  1  zf-C2H2_2       C2H2 type zinc-finger (2 copies)
      0.027   13.9   0.3       0.15   11.5   0.0    2.1  2  PhoH            PhoH-like protein
      0.032   14.5   0.1       0.18   12.1   0.1    2.4  1  AAA_22          AAA domain
      0.036   14.4   0.1      0.068   13.6   0.1    1.5  1  zf-met          Zinc-finger of C2H2 type
      0.038   13.7   0.0      0.073   12.8   0.0    1.5  1  IstB_IS21       IstB-like ATP binding protein
      0.051   13.8   0.1       0.13   12.5   0.1    1.6  1  CTU2            Cytoplasmic tRNA 2-thiolation protein 2
      0.051   14.1   0.0       0.12   12.8   0.0    1.6  1  ABC_tran        ABC transporter
      0.053   13.0   0.1        3.4    7.0   0.0    2.3  2  KTI12           Chromatin associated protein KTI12
      0.062   12.9   0.1       0.18   11.4   0.1    1.8  1  AAA_25          AAA domain
      0.068   14.0   0.1       0.23   12.4   0.1    1.9  1  zf-C2H2_4       C2H2-type zinc finger
      0.081   12.6   0.2       0.21   11.3   0.0    1.8  2  Cytidylate_kin  Cytidylate kinase
      0.081   13.3   0.1       0.19   12.2   0.0    1.7  1  AAA             ATPase family associated with various cellula
      0.086   13.2   0.0       0.33   11.4   0.0    2.0  2  RNA_helicase    RNA helicase


Domain annotation for each model (and alignments):
>> IPPT  IPP transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.6   0.2   2.1e-67   1.9e-64       1     224 [.      43     319 ..      43     322 .. 0.82

  Alignments for each domain:
  == domain 1  score: 217.6 bits;  conditional E-value: 2.1e-67
                 TTBTT-HTTTT---HHHHTTS-EESSS-B-TTS.---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTG.-S--B--HHHHHHHHHH.HHHS CS
        IPPT   1 qvYrgmdIgTakptaeeragvphhlidildpde.eysvadFqkdalkaieeilargkipilvGGTglYikallegl.delpeadeelraeleee.aeee 96 
                 q+Y g++I T+k+t ee++g+phhl++++++++ +++v +++++a+k+i+ei+arg+ipi+vGGT +Yi+ ll  + d + ++ +++ ++ e+  + ++
  CCE29200.1  43 QLYNGLPILTNKVTLEEQKGIPHHLLGHISLQNpPWNVTEYKREATKVIAEIRARGNIPIVVGGTQYYIDPLL--FpDVILDEVQQTTDSSESFpILQQ 139
                 89*****************************999***************************************..633333222344444455445566 PP

                 HHHHHHHHHHHC-HHHHTTS-TT-HHHHHHHHHHHHHHSS-HH..........................ECEEEEEECSHHHHHHHHHHHHHHHHHTTH CS
        IPPT  97 glealheelkevdpeaaakihpndrqRiiRalevyeetgkpls..........................ellviglesdreelyeridkRvdemleaGl 169
                  +e l eel+++dp +a+++hpndr+Ri+R+le+y +tgkp+s                          e l+++++sd+e+l er+d+Rvd+m ++Gl
  CCE29200.1 140 PTEVLLEELRKYDPIMAERWHPNDRRRITRSLEIYLHTGKPASqiyaeqearkaaapaseksdaattpwEKLLFWVYSDKEVLCERLDRRVDKMCDQGL 238
                 7888***************************************7777777777666666666665555533*****9********************** PP

                 HHHHHHHHH...............C.CCCSTTSHHHHHHHTT........SS-..HHHHHHHHHHHHHHHHHHHHHHHHTT CS
        IPPT 170 leEveklla...............k.alqaigykelleyleg........els..leeaieklkaatrqyaKrQltWfrkk 224
                 l+Ev++l++               k ++q+igyk++ +yle         el+    +a+e +kaatr+ya  Q +W+r k
  CCE29200.1 239 LDEVRSLYTfkqkmnaqgvaldmtKgIFQSIGYKQFEPYLEAvdagqdaqELEklNLSALESTKAATRRYANYQNKWIRLK 319
                 ********7777776666666554335*************8444444433332212359*******************955 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     2e-06    0.0018       4      57 ..      11      64 ..       8     107 .. 0.79
   2 ?    0.5   0.0      0.37   3.3e+02     124     165 ..     215     251 ..     197     273 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2e-06
         IPT  4 ylifGatttGKtaeaiklaketgapvivlDRvqcyselavgsGrpleeelegtr 57
                 ++ G+t+tGK+a a++lak+    +i  D +q y+ l + + + + ee +g+ 
  CCE29200.1 11 LVVLGSTGTGKSALAVELAKRFRGEIINSDAMQLYNGLPILTNKVTLEEQKGIP 64
                5789*******************************9998877777777766665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.37
         IPT 124 rlpdedvflakakkRvrqmlrpeeegaslldElaelwkepka 165
                   +d++v  ++  +Rv +m        +lldE+ +l++ +++
  CCE29200.1 215 VYSDKEVLCERLDRRVDKMCDQ-----GLLDEVRSLYTFKQK 251
                 4578999999999999999876.....999999999976654 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   5.2e-06    0.0047       1      75 [.      10     104 ..      10     246 .. 0.77
   2 ?   -2.5   0.0       5.9   5.3e+03      24      39 ..     402     417 ..     391     444 .. 0.51

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.2e-06
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdt.........lrrrlfgtdqqskt...........dytrvldrlyqilnelarkalsagrnvil 75 
                 l+++ G  G+GKs la +l+k+  +++++sd+         l ++++ ++q+ +             + +v++  ++ ++ +a+++++ ++++++
  CCE29200.1  10 LLVVLGSTGTGKSALAVELAKRFRGEIINSDAmqlynglpiLTNKVTLEEQKGIPhhllghislqnPPWNVTEYKREATKVIAEIRARGNIPIVV 104
                 67899**************************9777777776222333333332223334444443333334444444555555555555555555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.9
      AAA_33  24 gavllssdtlrrrlfg 39 
                 ++vl+++ ++ r ++ 
  CCE29200.1 402 QTVLVTEEAWQRHVKS 417
                 4555555555555544 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1     2e-06    0.0018       4      27 .]     398     421 ..     395     421 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2e-06
                  BTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHlkSKkHK 27 
                  C++C+    +e+a++ H+kS  H+
   CCE29200.1 398 CEICQTVLVTEEAWQRHVKSSGHR 421
                  **********************97 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.4e-05     0.021      24      68 ..       8      49 ..       2     153 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.4e-05
      AAA_16 24 pelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaip 68
                 +l+++ G  G+GKs+l+ el+++++++    ++ ++ ql  ++p
  CCE29200.1  8 QPLLVVLGSTGTGKSALAVELAKRFRGE---IINSDAMQLYNGLP 49
                3899*******************99998...55555555545554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00012       0.1       2      37 ..      12      46 ..      11      95 .. 0.80
   2 ?    0.4   0.0      0.96   8.6e+02      96     114 ..     210     230 ..     188     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00012
      AAA_18  2 lltGtpGvGKttlakeLskrlgf.gvnlrdvakengl 37
                ++ G  G+GK+ la eL+kr  f g+++++ a + + 
  CCE29200.1 12 VVLGSTGTGKSALAVELAKR--FrGEIINSDAMQLYN 46
                58899**************9..557777777766555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.96
      AAA_18  96 k..vvLtaspeelleRlekRg 114
                 k  ++++ ++e+l eRl +R 
  CCE29200.1 210 KllFWVYSDKEVLCERLDRRV 230
                 24489999*********9996 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0026       2.3       3      23 ..      12      34 ..      10      46 .. 0.83
   2 ?    4.5   0.0     0.041        37      43     112 ..     364     433 ..     345     460 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0026
      AAA_28  3 vitGgestGKTtlleaLaar..g 23
                v++G  +tGK+ l+ +La+r  g
  CCE29200.1 12 VVLGSTGTGKSALAVELAKRfrG 34
                89****************98533 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.041
      AAA_28  43 edalpwvedllafaervleeqleeeaaa..aankvlfcDrglldtlaYarayggeaeaeleaaarekrydlv 112
                 +++ p++ d+ +fa++vl+ +le   +a   ++ + +c + l+++ a+ r+     ++++ +  r++r +lv
  CCE29200.1 364 GQERPAAVDVSDFARHVLASALEPPPQAthVKRTCEICQTVLVTEEAWQRHVKSSGHRKVMK--RKQRRALV 433
                 3334444599************9976665579*******************99997887654..33344444 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   4.2e-05     0.038      48      83 ..     393     428 ..     378     437 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.2e-05
   zf-C2H2_2  48 eekleClyCekefkslealreHmkkkgHckineeee 83 
                 + k +C +C++   + ea + H+k+ gH+k++++++
  CCE29200.1 393 HVKRTCEICQTVLVTEEAWQRHVKSSGHRKVMKRKQ 428
                 55789*******99*****************87554 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00017      0.15      14      40 ..       3      29 ..       1      36 [. 0.86
   2 ?   -0.3   0.1      0.68   6.1e+02     123     134 ..     119     130 ..     118     134 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
                HHHHH-SEEEEE--TTSSTTHHHHHHH CS
        PhoH 14 ealkkndivfaiGpaGtGKtylavala 40
                + + ++ +++++G++GtGK+ lav la
  CCE29200.1  3 QHIPAQPLLVVLGSTGTGKSALAVELA 29
                556678899***************988 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.68
                 EEE-SGGG--HH CS
        PhoH 123 vilDEAQnttke 134
                 vilDE Q tt +
  CCE29200.1 119 VILDEVQQTTDS 130
                 8*******9975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1    0.0002      0.18       6      31 ..       9      34 ..       6     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
      AAA_22  6 gilvvtGesGtGKTtllrrlleqlde 31
                 +lvv G +GtGK+ l+ +l++++  
  CCE29200.1  9 PLLVVLGSTGTGKSALAVELAKRFRG 34
                689******************99843 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   7.5e-05     0.068       2      23 ..     397     418 ..     396     420 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.5e-05
      zf-met   2 yCelCnvtfnsesqlksHlqGK 23 
                 +Ce+C++++  e +++ H ++ 
  CCE29200.1 397 TCEICQTVLVTEEAWQRHVKSS 418
                 6*****************9985 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.2e-05     0.073      44      97 ..       5      62 ..       1      72 [. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.2e-05
   IstB_IS21 44 iekkenivllGpsGvGKshlaialgv....eavraglsvlfvrvedLveelkrarrdg 97
                i ++  +v+lG +G+GKs la+ l++    e ++++   l+  ++ L +++ +++++g
  CCE29200.1  5 IPAQPLLVVLGSTGTGKSALAVELAKrfrgEIINSDAMQLYNGLPILTNKVTLEEQKG 62
                66677799**************999733335678888888888888888888888776 PP

>> CTU2  Cytoplasmic tRNA 2-thiolation protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00014      0.13      39      96 ..     389     445 ..     337     460 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
        CTU2  39 eaeletsekCalCglplddkakewkrtitiselseteseeekeelekakeeeeeeaee 96 
                  ++++ +++C++C+  l  ++++w+r+++ s +++  +++++++l   +++++++ e 
  CCE29200.1 389 PQATHVKRTCEICQTVL-VTEEAWQRHVKSSGHRKVMKRKQRRALVLVDKTSSAKGEL 445
                 3347899**********.99*************9999999866655555555554444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00014      0.12       9      94 ..       6      96 ..       2     131 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00014
                ETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH.....HHHTCHHHHHHHSTT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx.....xxxxxxxxxxxxxxx RF
    ABC_tran  9 kegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren.....esdeeiekalsklgl 94
                 +  +++++G++G+GKS L+  la+  +   Gei ++++ ++  + l++l +++   +q+   ++l  ++++++      e+++e++k++++++ 
  CCE29200.1  6 PAQPLLVVLGSTGTGKSALAVELAKRFR---GEI-INSDAMQLyNGLPILTNKVTLEEQKgipHHLLGHISLQNPpwnvtEYKREATKVIAEIRA 96
                5667889*************99999986...999.776666665899999999999999998667777776555599888888888888777665 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0038       3.4       2      28 ..       9      35 ..       8      57 .. 0.89
   2 ?    3.4   0.0     0.048        43      47      84 ..     406     443 ..     379     445 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0038
                .EEEEE--TTSSHHHHHHHHHHHHHHT CS
       KTI12  2 pLvvltGlPssGKstrakeLakaleee 28
                pL+v+ G   +GKs +a eLak ++ e
  CCE29200.1  9 PLLVVLGSTGTGKSALAVELAKRFRGE 35
                9*********************99874 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.048
                 S--GGGHHHHHHHHHHHHHHHHTT.SEEEE-S---SHH CS
       KTI12  47 ykdsakekalRsslrsavkrdLskekvVIvDslnyikg 84 
                 ++++a  ++++ss  ++v ++ ++  +V vD++   kg
  CCE29200.1 406 VTEEAWQRHVKSSGHRKVMKRKQRRALVLVDKTSSAKG 443
                 667788999************************99998 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1    0.0002      0.18      28      54 ..       3      29 ..       1      32 [. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
      AAA_25 28 gllpagelallaGapgtGKttlaldla 54
                 ++pa+ l ++ G +gtGK++la++la
  CCE29200.1  3 QHIPAQPLLVVLGSTGTGKSALAVELA 29
                689*********************998 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00025      0.23       2      22 ..     397     417 ..     396     418 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00025
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkt 22 
                 +C+iC+++  + +a++rH+k+
  CCE29200.1 397 TCEICQTVLVTEEAWQRHVKS 417
                 6******************96 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00024      0.21       5      51 ..      15      61 ..      12      96 .. 0.86
   2 ?   -3.4   0.2       7.5   6.7e+03     142     157 ..     302     317 ..     292     327 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00024
                    -STTSSHHHHHHHHHHHHT-EEEEHHHHHHHHHHHHHHTT--TT-HH CS
  Cytidylate_kin  5 GPagsGKssvaralaeklglkyldtgalYRalalaalrrkvdlldea 51
                    G +g+GKs++a +la+++  +++++ a+     l +l +kv l +++
      CCE29200.1 15 GSTGTGKSALAVELAKRFRGEIINSDAMQLYNGLPILTNKVTLEEQK 61
                    789*************************9999999999988877665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.5
                     HHHHHHHHHHHHTT-- CS
  Cytidylate_kin 142 eRakRRlkqlkakgts 157
                     + a+RR+++ ++k   
      CCE29200.1 302 KAATRRYANYQNKWIR 317
                     3478999999888665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00021      0.19       2      36 ..      12      46 ..      11     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00021
                EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSS CS
         AAA  2 llyGppGtGKTllakavakelgvefleisgsells 36
                ++ G  GtGK++la  +ak +  e+++ ++++l +
  CCE29200.1 12 VVLGSTGTGKSALAVELAKRFRGEIINSDAMQLYN 46
                678*******************9999999999875 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00037      0.33       2      31 ..      12      41 ..      11      54 .. 0.82
   2 ?   -2.7   0.0       8.9   7.9e+03      41      70 ..     359     391 ..     355     413 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00037
  RNA_helicase  2 wlyGpsgeGKStlakeLakallkklklkkk 31
                  ++ G++g+GKS la eLak++ +++ +  +
    CCE29200.1 12 VVLGSTGTGKSALAVELAKRFRGEIINSDA 41
                  789*****************9998844444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 8.9
  RNA_helicase  41 ddfwdgYtgqevvvidDfgqvk.dee.nps.dl 70 
                    +f++g +++++v + Df++++  ++ +p  + 
    CCE29200.1 359 AKFLSGQERPAAVDVSDFARHVlASAlEPPpQA 391
                   567777777777777777776643334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3383.06
//
Query:       CCE29201.1  [L=774]
Description: probable homoaconitase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     2e-101  340.3   1.4    2.5e-70  237.8   0.1    2.2  2  Aconitase    Aconitase family (aconitate hydratase)
    1.2e-24   87.1   0.0    2.1e-24   86.3   0.0    1.4  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.8   0.1   2.8e-74   2.5e-70       2     309 ..      78     385 ..      77     393 .. 0.85
   2 !  101.9   0.2   4.5e-33   4.1e-29     352     461 .]     393     507 ..     388     507 .. 0.94

  Alignments for each domain:
  == domain 1  score: 237.8 bits;  conditional E-value: 2.8e-74
   Aconitase   2 kiwdahlv.....ee..egiayv...pdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefL 90 
                 ki+++ +v     ++  +g +yv   p++++++d +++ al+  ++  +++++ ++ ++tidh+v+++                     + n+ +y+ +
  CCE29201.1  78 KIVQRYAVgladgKKvkSG-DYVtvaPHHCMTHDNSWPVALKVQKMGLTKIHNNKQIVMTIDHDVSNK--------------------SAANQGKYASI 155
                 6666665555433113233.444556**************99999999999*************9999....................2345689**** PP

   Aconitase  91 ksaakafgirvvppgqGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavi 189
                 +++a+++g+++ + g+GI Hq++ E+g+a+pg++ v++DSH++ +gglG+l++ v +++a++++++ ++++++p v +++ltG +++gvt kD+++a+i
  CCE29201.1 156 EQFARKHGVDFHESGKGIGHQIMCEEGYAWPGTLTVASDSHSNHYGGLGCLGTAVVRTDAASIWATSKTWWQVPPVAKITLTGVMPPGVTGKDVIVALI 254
                 *************************************************************************************************** PP

   Aconitase 190 gklrkkgvvgkvvEffG..egvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaa......vlvea....ydkaqalfe..laadeda 274
                 g +++++v +++vEf+G  e+++s+++++r+TiaNM++E+GA +glfp+d+ ++++L+a   ++a       +   +    +++ ++l++  ++ad+ a
  CCE29201.1 255 GLFNQDDVLNHAVEFTGseETLRSITIDERMTIANMTTEWGALSGLFPIDSVLISWLRARATTSAMlkpelgT---KarfnHERIDELVQnpIRADPRA 350
                 *****************8889*************************************777755543322111...112224445556633589***** PP

   Aconitase 275 eydkvleldlstlepsvagpkrPqdavplselvkk 309
                 +y+k l l+lstl+p+v+gp++++ a+pl++l ++
  CCE29201.1 351 VYAKSLYLNLSTLSPYVSGPNSVKLATPLRDLESQ 385
                 *****************************777654 PP

  == domain 2  score: 101.9 bits;  conditional E-value: 4.5e-33
   Aconitase 352 nedvraaagllakavekgl..kvkpgvktsvaPGSevvkayleaeGlleiLekaGfevvgagCstCig.nsdrleegeaivsssNRNFegRqgpntra. 446
                 + d++aaa+++++a++ g+  kv++gvk+++a++S++ ++ +e++G +++L +aG+   ++gC+ Cig  ++ +e+ge+++s+sNRNF+gR g+ +r+ 
  CCE29201.1 393 YLDISAAARVFREAAKDGKkpKVAEGVKFYLAAASRAEQEIAEEAGDWQVLVEAGAIPQESGCNQCIGlGPGIMEPGETAISASNRNFKGRLGSPVRTk 491
                 66999*******9999997457899*******************************************************************9887777 PP

   Aconitase 447 .yLaSPelvvaaAlaG 461
                  yLaSPe+v+a+Al+G
  CCE29201.1 492 aYLASPEVVAASALQG 507
                 8*************98 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0   2.4e-28   2.1e-24      12     130 ..     575     699 ..     567     700 .. 0.91

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 2.4e-28
                  CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEE.......EHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHHHTTE CS
  Aconitase_C  12 tedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgeke.......dvvdaaerykkegaklvviagknfGeGSSRehAAkalrllGi 102
                  te+ +   ++  ++p ++e +i+ ++++n ++++++++k+t++d   +e       +++d ++r   + ++++v++ +nfG+GSSRe+ A+a +++Gi
   CCE29201.1 575 TEKTETLTEILPGFPEKIESEIVFLDADNLNTDGIYPGKYTYQDGITTEkmaevcmENYDPEFRNIAKASDILVSG-FNFGTGSSREQSATAILAKGI 671
                  5556667889999******************************9766667799999**********9********9.********************* PP

                  EEEEES-B-HHHHHHHHHTT-EEEEEST CS
  Aconitase_C 103 kaviaeSFerIfennliknglLplefke 130
                   +v+a+SF++If++n+i+n+l+ le+++
   CCE29201.1 672 PLVVAGSFSNIFSRNSINNALMGLEVPR 699
                  ************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.38
# Mc/sec: 6143.62
//
Query:       CCE29202.1  [L=759]
Description: uncharacterized protein CPUR_02894 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-18   65.4   0.1    6.6e-18   64.7   0.1    1.3  1  Fungal_trans    Fungal specific transcription factor domain
  ------ inclusion threshold ------
       0.12   10.8   0.1       0.19   10.1   0.1    1.2  1  Lys-AminoMut_A  D-Lysine 5,6-aminomutase TIM-barrel domain of


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.1   7.4e-22   6.6e-18       2     175 ..     190     358 ..     189     407 .. 0.86

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 7.4e-22
  Fungal_trans   2 drffsnfhpqfpilhkpsflpkt..ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeili.hedfsspssslwilq 95 
                   ++f + ++p+f ++h p++ p       n  + ++++++ll++i+++++l++++ ++++    t+e+   ++++ +  ++   ++ +  ++++++lq
    CCE29202.1 190 QLFLDRVNPLFKVVHVPTIQPVVleGAMNMMSIPHNQQALLFSIYSTASLSMSESESIQLLGMTREA--AVQSFMAGTKIAlVRCNFLKNYDMTALQ 284
                   789********************98888889999*************************99999988..5666666555544788999999****** PP

  Fungal_trans  96 sLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppl 175
                   +L+++    ++++dr +++ + g++vr+a+++g hr+ ++ g      l+  e e+rrR+ww + + D  +a+  G +  
    CCE29202.1 285 ALVHFMHSMQGRCDRHAAWVLTGTVVRIAQKMGYHRDGESLG------LDMYETEMRRRIWWQIMIQDAKYAMLSGLNHS 358
                   ******************************************......99999***********9999999998887654 PP

>> Lys-AminoMut_A  D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   2.1e-05      0.19     393     457 ..     241     308 ..     225     319 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 2.1e-05
                     HHHT-SEEE---TTTTTSS--HHHHHHHHHHHHHHHH.HTTTHHHH---..-TTSHHHHHHHHHHHHH CS
  Lys-AminoMut_A 393 iltgqgiqllGmlteaihtPflsdralalenakyvfn.aakdlgeeief..kedgiiqkrakevleka 457
                     +  + +iqllGm  ea +  f++  ++al   +++ n  +  l+  ++f  + +g  ++ a  vl+ +
      CCE29202.1 241 MSESESIQLLGMTREAAVQSFMAGTKIALVRCNFLKNyDMTALQALVHFmhSMQGRCDRHAAWVLTGT 308
                     556789**************************999873477777766651145788888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5397.34
//
Query:       CCE29203.1  [L=182]
Description: related to cytochrome b-large subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-17   62.7   3.2    4.4e-17   62.2   3.2    1.2  1  Sdh_cyt   Succinate dehydrogenase/Fumarate reductase transmem


Domain annotation for each model (and alignments):
>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   3.2   2.5e-21   4.4e-17       2     116 ..      55     172 ..      54     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 2.5e-21
     Sdh_cyt   2 rknrplsphlqlyrlplgaw.lsilhritGvallvglllllvwlllalslsspesfarvvallas...piklilllllllallyHllnGiRhllwDlgl 96 
                 r +rp+sphl++y+++ +++ +s   ritG+ l ++ +  +  +l+a++l+ +   a +v+ +a     +k  + +++ ++++yH++nG+Rhl+ Dlg+
  CCE29203.1  55 RLQRPISPHLGIYKIEQTWLgHSAWTRITGCTLSGAAYAYFATYLIAPLLGWHLESASLVSAFAVlpfAVKGGIKFAFGFPFAYHFINGMRHLWFDLGK 153
                 789***********98776537899**********666666677999999*999999997777666556676677************************ PP

     Sdh_cyt  97 glelesarksalavlalava 116
                 g+++ s  k++ ++l+ + +
  CCE29203.1 154 GFSKASI-KKGEMALWTSSI 172
                 **87666.444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1426.01
//
Query:       CCE29204.1  [L=468]
Description: related to TATA-binding protein-associated-factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-27   94.9   0.0    6.3e-27   93.7   0.0    1.6  1  TAF6_C         TAF6 C-terminal HEAT repeat domain
    4.8e-21   74.7   0.3    8.7e-21   73.9   0.3    1.4  1  TAF            TATA box binding protein associated factor (TA
     0.0032   17.8   0.4     0.0056   17.1   0.4    1.3  1  Histone        Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.037   14.1   0.1      0.085   12.9   0.1    1.5  1  TFIID-31kDa    Transcription initiation factor IID, 31kD subu
      0.091   13.1   0.1       0.18   12.1   0.1    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> TAF6_C  TAF6 C-terminal HEAT repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.0   1.8e-30   6.3e-27       2      90 .]     284     376 ..     283     376 .. 0.97

  Alignments for each domain:
  == domain 1  score: 93.7 bits;  conditional E-value: 1.8e-30
      TAF6_C   2 ltcllakklgak...seledhwaLRdfAAslLakilkkysssyktLkprvtrtllkvlldpkkslgtlyGallglaal.Geeavrklvlpnlk 90 
                 ltcl+a+klg++   ++l+d+++LR++AAsl+++i++kys s++ L+p++trt+lk++ldp+k++++lyGa++gl ++ G+ea+r+lvl nlk
  CCE29204.1 284 LTCLMARKLGSDdgvDALRDQYELRQLAASLVGRIARKYSASNTLLRPKLTRTCLKYFLDPTKPPAVLYGAIFGLLEAgGPEAIRVLVLRNLK 376
                 8********999888999999*********************************************************88*********9996 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.3   2.4e-24   8.7e-21       3      66 .]      11      74 ..       9      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 2.4e-24
                ---HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  3 ilpkesvkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                +++ e vk++Aes+Gi  L++ea+++L++dveyr+ +++ ea++ mr ++R++Ltv+D++ AL+
  CCE29204.1 11 LWNTENVKDVAESVGIHALNEEALKALTQDVEYRVGQVIIEALRLMRAARRTTLTVNDISLALK 74
                6899**********************************************************98 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.4   1.5e-06    0.0056      84     129 ..      29      74 ..      17      76 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.5e-06
                 EXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  84 isaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 +  ea+ al++ +E+   ++  eA +l++ a+R T+t  Di lA++
  CCE29204.1  29 LNEEALKALTQDVEYRVGQVIIEALRLMRAARRTTLTVNDISLALK 74 
                 6689****************************************98 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.4e-05     0.085      11      68 ..      17      74 ..       7      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.4e-05
  TFIID-31kDa 11 ihliLaslgvteyeerVvlqLl.dfayrytssvLedAkvlaehakkkevslddvrlAiq 68
                 ++ + +s+g+++++e+ ++ L  d+ yr + +v+ +A+ l++ a++++++++d+ lA++
   CCE29204.1 17 VKDVAESVGIHALNEEALKALTqDVEYR-VGQVIIEALRLMRAARRTTLTVNDISLALK 74
                 56677899***********996488888.6889999*********************86 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1     5e-05      0.18      20      65 .]      28      73 ..      17      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5e-05
                   -B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF 20 kiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                    ++++A + +++ ve  + ++  eA +++ +++r t++ ++i+lA+
     CCE29204.1 28 ALNEEALKALTQDVEYRVGQVIIEALRLMRAARRTTLTVNDISLAL 73
                   5789****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3420.66
//
Query:       CCE29205.1  [L=508]
Description: uncharacterized protein CPUR_02897 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-08   34.5  29.5      1e-08   34.5  29.5    2.2  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5  29.5   5.6e-13     1e-08      41     309 ..     110     409 ..      48     411 .. 0.72
   2 !    9.3  27.0   2.7e-05      0.49       1     166 [.     307     486 ..     304     507 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 5.6e-13
       MFS_1  41 yalgaavaslplGrlsdrfGrrrvlllglllfalg....lllllfasslw.l....llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagf 130
                  +l+ +++++p+G  +drf+rr +l l++ + +++    ++++lf ++++ l    l+vl  l G g  ++ ++  a+++d++++ +r  ++ l+ a +
  CCE29205.1 110 GMLVGLLTAVPYGLAADRFSRRNLLALSIGGILISmageIIVCLF-PNVFpLrlvwLAVLFTLIGGGPLIFSALLFAIASDVSSDARRVIVFFLIEALT 207
                 5788899***************98887766666551004444446.7766456665999999************************************* PP

       MFS_1 131 slGailgpllggllasslgWravfyilaivsllafvlfllll...peepperkrkspkeeekgtgpaplvp....................awkallkd 206
                  ++a l  +l  ++a    W av++ la  ++  +   +l+l   ++ ++  + +s+ e     +p+++ p                    + +++ + 
  CCE29205.1 208 IMAAFLSQPLYKAMANRNPWLAVYMGLAMTCISTIF--VLFLpatRDVASLTGLDSQNES----VPRNADPvcvftklyrqgrnaakrmvsVGRLVTRE 300
                 ***************999*************99944..3555332555555555555555....44444445533333333222211233322222222 PP

       MFS_1 207 pvlw.illialllfffgfsglltllplylqevlgls.......glllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalglallav 296
                 +  + +ll++++lf + +++ + +++ yl  +l+++       +++ + + +a++a+v    +l++ rl   +++  + l+la +++l++++gl+++++
  CCE29205.1 301 NKRLgLLLLGAFLFYMSHYSPVLTVF-YLIRRLNWTlsdanlvSVVKSWTKMAVVAVVLPTTSLILNRLR--YNPaAKDLWLARGIILAVVAGLVFMGF 396
                 22224677777777777776444444.469********99666555555555555555544455555544..2224889******************** PP

       MFS_1 297 tssavllllvlvl 309
                 ++  ++++++ vl
  CCE29205.1 397 SNGRAMIIMGTVL 409
                 *777777765554 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 2.7e-05
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalga....avaslplGrlsdrf..G..rrr.vlllglllfalglllll.fasslwlll 89 
                 lll+afl +++ +   +++  +l + l+++ s ++l+ ++ +++     av  + ++ + +r+     ++  +l  g++l ++++l+++ f s+  +++
  CCE29205.1 307 LLLGAFLFYMSHYSPVLTVF-YLIRRLNWTLSDANLVSVVKSWTKmavvAVVLPTTSLILNRLryNpaAKDlWLARGIILAVVAGLVFMgF-SNGRAMI 403
                 56788888888777555555.9**************9999888554443555555577777774425588888999999999996666658.6645888 PP

       MFS_1  90 vlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.....Wrav.fyilaivsllafv 166
                 ++  +     +a++p++ +l++    +++ g+ + l++a+ sl+ ++g ++  +l   ++     W ++ f++lai+++la+ 
  CCE29205.1 404 IMGTVLLSPDSAFIPVARSLLVLFNGGQHTGLLFTLIAAMQSLSLLVGLPFLLWLFKVGSywgsvWYGLpFFVLAILTALAGG 486
                 8888888889**********************************************777787788544469999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3525.82
//
Query:       CCE29206.1  [L=415]
Description: uncharacterized protein CPUR_02898 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3266.60
//
Query:       CCE29207.1  [L=320]
Description: uncharacterized protein CPUR_02899 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-11   44.0   8.2    7.6e-11   42.7   8.2    1.7  1  Adaptin_binding  Alpha and gamma adaptin binding protein p34


Domain annotation for each model (and alignments):
>> Adaptin_binding  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   8.2   4.3e-15   7.6e-11       1     120 [.     181     314 ..     181     315 .. 0.66

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 4.3e-15
  Adaptin_binding   1 ekqGieRirEaLethmWsglelkkqtaslsnrnaslet....................eadeaqlekeeeeqdpsqpastepdksaaesesada 74 
                      ek+Gi+R++EaLe+++W+  +       ls+  +++ +                       + +  k+ + +++ q +                
       CCE29207.1 181 EKTGIARVKEALESNDWELADAEN----LSDFGDFEGGggseakkdhldpdsldfgfdP-TDIENLKKAIFEADGQADGAV------------- 256
                      89****************876544....3333333333666675666666666666632.333333333333333333333............. PP

  Adaptin_binding  75 ef.............lfggdeaarledlesllsklqqakdnvrnlpdeeRkkeAakval 120
                       +             + ++d+++++ ++e+++ klq++++  + lp+++R+++Aa++++
       CCE29207.1 257 -EgdaatqkdgtsgeKTEKDTNDEMTKMEDMMRKLQAVREAGEGLPEAQRRRMAARAVQ 314
                      .2334444444444488999999********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 2640.76
//
Query:       CCE29208.1  [L=626]
Description: uncharacterized protein CPUR_02900 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-19   69.8   2.3    2.6e-19   68.8   2.3    1.6  1  Homeodomain   Homeodomain
     0.0029   17.4   0.3     0.0073   16.2   0.3    1.7  1  Homeobox_KN   Homeobox KN domain
  ------ inclusion threshold ------
       0.34   10.4   2.9       0.19   11.2   0.7    1.6  2  CPSF73-100_C  Pre-mRNA 3'-end-processing endonuclease polyade


Domain annotation for each model (and alignments):
>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   2.3   4.3e-23   2.6e-19       2      56 ..      71     125 ..      70     126 .. 0.97

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 4.3e-23
                  T-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Homeodomain   2 rkRttftkeqleeLeklFeenrypsaeereeLAkklgLeerqVkvWFqNrRakek 56 
                  +kR++ t++ql++Le +F++n++p+a+ r ++A++++++er V++WFqNrRak k
   CCE29208.1  71 QKRQRATQDQLNILEVEFNKNPTPTASVRDRIADEINMTERSVQIWFQNRRAKIK 125
                  69***************************************************88 PP

>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.3   1.2e-06    0.0073       7      39 ..      90     122 ..      87     123 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.2e-06
  Homeobox_KN   7 hnPYPseedKeeLlkeTglsvkqitnWFINaRr 39 
                  +nP P++  ++++++e +++ + ++ WF N R+
   CCE29208.1  90 KNPTPTASVRDRIADEINMTERSVQIWFQNRRA 122
                  6999**************************996 PP

>> CPSF73-100_C  Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   3.2e-05      0.19     110     191 ..      38     120 ..      25     134 .. 0.70
   2 ?   -2.7   0.1      0.59   3.5e+03     131     166 ..     345     380 ..     320     397 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.2e-05
  CPSF73-100_C 110 svesspasvkrssk..khshsh..kekleeknshaklskeerlerllllLeaqFGedk.vie.lpkepvpgvevkvdkkeakidletl 191
                   s+++sp    +ss+  +hshs+   +k++ ++++++++++   +  l +Le  F ++  +++ + ++  ++  +++ + +++i++++ 
    CCE29208.1  38 SCKQSPS---QSSSggNHSHSKrpPRKSTLTQQQKNQKRQRATQDQLNILEVEFNKNPtPTAsVRDRIADE--INMTERSVQIWFQNR 120
                   3344444...555545888888776666677788888888888888999*****98885444454444444..889999999998875 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.59
  CPSF73-100_C 131 ekleeknshaklskeerlerllllLeaqFGedkvie 166
                   ++++  ++ +  s+ ++ +  ++++++q+G ++v +
    CCE29208.1 345 SVSAPVSPARPASQPNFHQPHAAMMQDQWGMNQVHS 380
                   445555666666677777777889999999887543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 4973.25
//
Query:       CCE29209.1  [L=344]
Description: uncharacterized protein CPUR_02901 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-05   22.2   0.0    0.00012   21.6   0.0    1.2  1  Pkinase         Protein kinase domain
    0.00022   21.2   0.1    0.00038   20.5   0.1    1.5  1  APH             Phosphotransferase enzyme family
    0.00094   18.6   0.0     0.0015   17.9   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.017   14.7   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase
      0.022   13.5   0.0      0.028   13.2   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.3e-08   0.00012     108     144 ..     243     280 ..     234     289 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3.3e-08
                 HHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTT CS
     Pkinase 108 legleylHskgiiHrDlKpeNiLid.ekgelKitDFGl 144
                 +++l+ +H++g++H D+   N+L++ e+++++++DF  
  CCE29209.1 243 VQALQAVHREGVLHGDVRWGNVLFSpETRKIMLIDFER 280
                 89***********************99999******75 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1     1e-07   0.00038     151     196 ..     228     281 ..      74     283 .. 0.56

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1e-07
                 H......HHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 151 q......vlaalaallpg...elptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 +       + ++++ +++     ++++lHgD + gN+l+ p+  ++  +iDfe++
  CCE29209.1 228 RywmdwfEIPWVERGVQAlqaVHREGVLHGDVRWGNVLFSPETRKI-MLIDFERS 281
                 222222233333333333555689****************998887.9*****87 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.2e-07    0.0015     130     169 ..     245     281 ..     225     283 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.2e-07
         Kdo 130 liaklhragvnHadlyaknillqqeeeeeaeiwliDldka 169
                 + +  hr gv H+d+   n+l+  e    ++i+liD++++
  CCE29209.1 245 ALQAVHREGVLHGDVRWGNVLFSPET---RKIMLIDFERS 281
                 56779*******************98...**********7 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.9e-06     0.017     149     174 ..     256     281 ..     236     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.9e-06
                     -S--SGGGEEE.-CTTEEEE--GTT- CS
  Choline_kinase 149 HnDlqegNillnkeekklvlIDFEYa 174
                     H D+  gN+l++ e++k++lIDFE +
      CCE29209.1 256 HGDVRWGNVLFSPETRKIMLIDFERS 281
                     99**********************65 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   7.9e-06     0.028     312     364 ..     239     286 ..     184     302 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.9e-06
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsd 364
                     ++  +++++  +   g+LH D+  +N+l+      ++rk +LiD++     ++
      CCE29209.1 239 VERGVQALQAVH-REGVLHGDVRWGNVLFS----PETRKIMLIDFERSFVFGE 286
                     666789999999.9***************9....6789******997766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2564.84
//
Query:       CCE29210.1  [L=447]
Description: uncharacterized protein CPUR_02903 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        3.6    7.3  14.9       0.19   11.4   9.3    1.7  2  DUF745    Protein of unknown function (DUF745)
        5.9    6.4  11.3         10    5.6  11.3    1.3  1  DUF572    Family of unknown function (DUF572)
        9.8    6.7   8.6         16    6.0   6.8    2.1  2  L31       Mitochondrial ribosomal protein L31


Domain annotation for each model (and alignments):
>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   9.3   3.2e-05      0.19      67     145 ..      13      98 ..       9     114 .. 0.76
   2 ?   -3.8   0.3       1.5   9.2e+03     124     130 ..     151     157 ..     137     166 .. 0.40

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.2e-05
      DUF745  67 leqelreaeavvqeekkslqsseanaka....aakaakqaqqqlealkallka...akenlenaeqvaagaqqelaektqlleaAk 145
                 l q l++ ++ v+e  ++lq++++++++    ++++a+qaq++   l+++lk    a++  +++++  ++a q+++ek++ l++A+
  CCE29210.1  13 LRQRLEDNDRLVEEKDRALQQAQETIRLlqhvVQQTAQQAQEKDVLLQKTLKRerrARKGKHRMQKERDNAIQQVQEKNKGLQHAR 98 
                 6789999*****************997611115566667777777899999852226677788999999999******99999885 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.5
      DUF745 124 eqvaaga 130
                  ++ ++a
  CCE29210.1 151 SKTTENA 157
                 1111111 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  11.3    0.0017        10     123     247 ..      15     160 ..       2     184 .. 0.28

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0017
      DUF572 123 eeaedamkklEkrtkdskkemealesLeeLq.elnqrqakvdfdanlelrkefreekkereeeeedeealkekislekikllpedeedekkakllegkt 220
                 ++ ed  + +E++    ++++e++  L++   ++ q++++ d+     l +e r++k +   ++e+++a++ +++  k k l+    + +    l    
  CCE29210.1  15 QRLEDNDRLVEEKDRALQQAQETIRLLQHVVqQTAQQAQEKDVLLQKTLKRERRARKGKHRMQKERDNAIQ-QVQE-KNKGLQHARLS-TLGGHL---- 106
                 22333344444444444444444444444431233333333332222222222222222222222444444.3311.11222111111.111111.... PP

      DUF572 221 e.................................slfasseesaksakk.kptkkesskek 247
                 +                                 +     +e+++++++ k+t  e+++++
  CCE29210.1 107 NrsqengntlsgvgvppaisatdgtglarathgtR-----TEESNTQSQsKTT--ENAEQT 160
                 01111122222222223222222222222111110.....1111111110000..111111 PP

>> L31  Mitochondrial ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.8    0.0027        16      18      89 ..       8      78 ..       4      80 .. 0.78
   2 ?    1.6   1.5     0.064   3.8e+02       8      52 ..      59     100 ..      55     114 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0027
         L31 18 tqkarqrkRlkavDevieavkeslkkkgvslkalekakaelpkesemspkdKYt.vFskkskgYRKsihkvpk 89
                t +  +r+Rl++ D+ +e+ +++l++++ +++ l++  +  ++ ++ ++kd       k++++ RK+ h++ k
  CCE29210.1  8 TERSFLRQRLEDNDRLVEEKDRALQQAQETIRLLQHVVQ--QTAQQAQEKDVLLqKTLKRERRARKGKHRMQK 78
                566778****************************99999..55566666665431334667788999998765 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.064
         L31   8 lwKipwrlsktqkarqrkRlkavDevieavkeslkkkgvslkale 52 
                 l K+  r  +++k ++r   k+ D+ i++v+e   +kg++  +l+
  CCE29210.1  59 LQKTLKRERRARKGKHRMQ-KERDNAIQQVQEK--NKGLQHARLS 100
                 5555555555555555543.5679999999987..5566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1936  (0.107981); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 3300.90
//
Query:       CCE29211.1  [L=451]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-19   70.7   0.0    4.9e-09   35.9   0.0    2.2  2  Pkinase      Protein kinase domain
      9e-07   28.4   0.0     0.0045   16.3   0.0    3.1  3  Pkinase_Tyr  Protein tyrosine kinase
     0.0018   17.7   0.0        1.8    7.8   0.0    2.6  3  Kinase-like  Kinase-like
  ------ inclusion threshold ------
      0.046   13.1   0.6      0.082   12.2   0.0    1.6  2  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
      0.062   12.7   0.0       0.11   11.9   0.0    1.4  1  CHAT         CHAT domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.4e-11   5.1e-08       1     132 [.      48     188 ..      48     205 .. 0.79
   2 !   35.9   0.0   1.4e-12   4.9e-09     134     264 .]     250     421 ..     245     421 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.4e-11
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHS..CTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHH. CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklk..hpnivrlyevfee....kdelylvleyveggeladlle. 90 
                 y+ l+ lG+G  +kV  a+++et+k vA+K+   +++ ++ +  +++ + ++  + ++     i +l++ fe      ++ +lv+  ++++ l+d+l  
  CCE29211.1  48 YRILHLLGHGVWSKVWLAIDEETRKYVAIKVGIAQSDGSEGDilTDISQSLASSNVSNdkKLMIPTLLDRFEFrgpkGTHPCLVTLPARCT-LEDALYk 145
                 677899*************************999999998875533333333333333222234455555554666788999999999988.6666655 PP

                 .HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase  91 .rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid 132
                  r++ ++ + a+++a+q++ +++ +H+kg  H Dl  +N+L++
  CCE29211.1 146 aRRRLVQLDLARSLAAQLAIAVSIVHEKGYAHGDLHLNNFLLQ 188
                 77778************************************97 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 1.4e-12
                 TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HH CS
     Pkinase 134 kgelKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpe 229
                 +++l ++DFG a +   +s      g+   ++PE l   e++ + ++D+WslG +++ ll+ + +  + +g     + + q    +++ g   +  +++
  CCE29211.1 250 EAKLTLSDFGAAFRPADKS-RFISYGDLALRPPEALfePEKPLDFASDIWSLGFLIFRLLAVRSLIDEVRGCALPGQVTAQ---HFELSGhMPTAWWRR 344
                 56799*******9999988.66678***********9778999************************88888877777777...444444323344555 PP

                 HTTS..........................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 230 asei..........................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++e                                              +++ll+++l+++p++R+ ++++l+++++
  CCE29211.1 345 WEERpewytedgepvedepwswerrfeewvqkprqtremeklaedeLAAVLKLLRSMLAWKPSERPDISKVLESDWM 421
                 55556668889********************************98888899*************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-06    0.0045       4     137 ..      51     188 ..      48     196 .. 0.72
   2 !    7.4   0.0   0.00066       2.4     141     199 ..     252     308 ..     225     319 .. 0.75
   3 ?    0.4   0.1     0.089   3.2e+02     228     257 ..     388     417 ..     363     418 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.3e-06
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.....-BTTB--EEEEEE...SSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.....khpnivkllgvct...keepllivteyvkgGdLlkfLr 93 
                   + lG+G ++kV+ +  +    +++  Va+K+  ++++ +e + l++  + + +      k+  i  ll        ++++  ++ + +  +L++ L 
   CCE29211.1  51 LHLLGHGVWSKVWLAIDE----ETRKYVAIKVGIAQSDGSEGDILTDISQSLASSnvsndKKLMIPTLLDRFEfrgPKGTHPCLVTLPARCTLEDALY 144
                  5789*********99988....788889999887777766543333333333332011113334555555555555444455555688899******* PP

                  HTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr  94 kkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLls 137
                  k +++ ++l+   s+a+q+A +++ +++k + H dl   N Ll+
   CCE29211.1 145 KARRRLVQLDLARSLAAQLAIAVSIVHEKGYAHGDLHLNNFLLQ 188
                  **888888888899****************************97 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00066
                  EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 141 vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEif 199
                  +  +sDfG a +  ++++  + ++        +pE+l+e +  +  +sD+Ws G l++ ++
   CCE29211.1 252 KLTLSDFGAAFRPADKSRFISYGDL----ALRPPEALFEPEkpLDFASDIWSLGFLIFRLL 308
                  5567777777766555555544433....34589***9987779***********999776 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.089
                  TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 228 ekcpeelyelmkkcweedpeeRptfselve 257
                  e+  +++ +l+++ ++ +p+eRp++s+++e
   CCE29211.1 388 EDELAAVLKLLRSMLAWKPSERPDISKVLE 417
                  3345678899999************99875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00051       1.8       7      59 ..      44      93 ..      39     108 .. 0.80
   2 ?   -2.0   0.1      0.48   1.7e+03     144     178 ..     155     188 ..     138     203 .. 0.73
   3 !    6.7   0.0    0.0011         4     181     244 ..     251     308 ..     244     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00051
  Kinase-like  7 lgerertlvrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerl 59
                 l+er+r l   +ll++g  s+v+++ d+et +++a+kv++ +s+ s+ d+   
   CCE29211.1 44 LNERYRIL---HLLGHGVWSKVWLAIDEETRKYVAIKVGIAQSDGSEGDILTD 93
                 55555555...68999999**************************99988555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.48
  Kinase-like 144 iarlllTlqlirlaanLqakglvhgkftvdnllld 178
                  +ar  l +ql   +   ++kg  hg+++ +n+ll+
   CCE29211.1 155 LARS-LAAQLAIAVSIVHEKGYAHGDLHLNNFLLQ 188
                  4444.446777777888999999999999999986 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0011
  Kinase-like 181 gglmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriw 244
                   +l l +f+a +r  +k +  s    ++ PpE l +     +++     ++ d W lG  i+r+ 
   CCE29211.1 251 AKLTLSDFGAAFRPADKSRFiSYGDLALRPPEALFE-----PEK--PLDFASDIWSLGFLIFRLL 308
                  578999***99999999998788889******8877.....444..566899**********986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.3e-05     0.082     115     155 ..     151     191 ..     136     198 .. 0.82
   2 ?   -2.6   0.2      0.83     3e+03      21      59 ..     364     401 ..     344     405 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.3e-05
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 ++  l r l  +++ +++  h+ g  H+dl   n+llq   
  CCE29211.1 151 VQLDLARSLAAQLAIAVSIVHEKGYAHGDLHLNNFLLQLPS 191
                 66678889999**************************9875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.83
         Kdo  21 wfvvaekvnaalrkyyrggllgklskdlyrfklgrtrav 59 
                 w+ + ++ +   +k +  + ++kl+ d++ + l+ +r++
  CCE29211.1 364 WSWERRF-EEWVQKPRQTREMEKLAEDELAAVLKLLRSM 401
                 5555555.4445566667777777777777777777766 PP

>> CHAT  CHAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     3e-05      0.11     136     184 ..      41     116 ..      28     160 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
                 xxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxx RF
        CHAT 136 ksalsrryrvvHfatHgvfn.....anpplqsglvlsaense.........................edglLtaeeile 184
                  + l++ryr++H+ +Hgv++      +++ + +++++    +                         +d++L +  +l+
  CCE29211.1  41 DDRLNERYRILHLLGHGVWSkvwlaIDEETRKYVAIKV---GiaqsdgsegdiltdisqslassnvsNDKKLMIPTLLD 116
                 555569**************666663444444444432...02234444444444444445555565555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:01.42
# Mc/sec: 960.25
//
Query:       CCE29212.1  [L=140]
Description: uncharacterized protein CPUR_02905 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 978.89
//
Query:       CCE29213.1  [L=502]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-16   58.5   0.0    4.3e-08   32.8   0.0    2.4  2  Pkinase      Protein kinase domain
    0.00012   21.5   0.0        0.1   11.8   0.0    2.8  3  Pkinase_Tyr  Protein tyrosine kinase
     0.0031   16.9   0.0          2    7.7   0.0    2.1  2  Kinase-like  Kinase-like
  ------ inclusion threshold ------
       0.15   12.0   0.1       0.34   10.8   0.1    1.5  1  Macscav_rec  Macrophage scavenger receptor


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   7.8e-09   3.5e-05       1     121 [.      81     210 ..      81     218 .. 0.76
   2 !   32.8   0.0   9.6e-12   4.3e-08     134     264 .]     293     470 ..     287     470 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 7.8e-09
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHH.HHHHHSCTT.....B--EEEEEEE....SSEEEEEEE--TTEBHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEik.ilkklkhpn.....ivrlyevfee....kdelylvleyveggeladll 89 
                 y+ ++klG+G+f+++  a+++et+k vA+K+   +++ ++ +  +l+Ei+  l++++ +n     i +l++ fe      ++ +lv+  ++++  +  +
  CCE29213.1  81 YRIVHKLGHGTFSTIWLALDEETRKYVAIKVEIAQSDGSEGD--ILTEISqSLANSNISNdkkllIPTLLDRFEIsgpeGTHPCLVTLPARHNLKNAQY 177
                 67889*************************999999988776..9999852445554222122224455555554888788888998888877544445 PP

                 H.HHSS--HHHHHHHHHHHHHHHHHHHHTTEE- CS
     Pkinase  90 e.rkgslseeeakkiakqilegleylHskgiiH 121
                 +     ++ + a+++a+q++ +++ +H++g  H
  CCE29213.1 178 NaGTELFQLDVARSLAAQLAIAVSIVHEQGYAH 210
                 5344459*********************99888 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 9.6e-12
                 TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHT....HHHHHHHCT.SHH. CS
     Pkinase 134 kgelKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldq....lekilkilg.etke 225
                 +++l ++DFG a +   +s      ++ e ++PE     e++ + ++D+WslG+ ++e+l ++p+  g    +    ++++    +++ +++ g   + 
  CCE29213.1 293 EAKLTLSDFGTAFRPADKS-RYVSYADLELRPPEASfePETPLDFASDIWSLGCAIFEILGNRPLIDGGPVID---GDFERpgeiTVRQVELSGrMPST 387
                 56799********999988.6777899********98777899****************99999888543322...23322211122222333342233 PP

                 ..HHHTTS............................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 226 klpeasei............................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                  +++++e                                                +++ll++++++ p++R+ ++++l+++++
  CCE29213.1 388 WWKRWEERqnwyteegrpllhanrawpwerrleewvqaprqtsgmetldedeLAAVLKLLRDMFAWRPSDRPNISKVLSSDWM 470
                 33444443666999***********************************98888899************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0   0.00093       4.2       3      52 ..      83     127 ..      81     211 .. 0.85
   2 !   11.8   0.0   2.3e-05       0.1     141     199 ..     295     351 ..     287     359 .. 0.81
   3 ?   -2.1   0.0      0.42   1.9e+03     232     256 ..     441     465 ..     424     467 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00093
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleea 52 
                  + +klG+G+f++++ +  +    +++  Va+K+  ++++ + + ++l+e+
   CCE29213.1  83 IVHKLGHGTFSTIWLALDE----ETRKYVAIKVEIAQSDGS-EGDILTEI 127
                  6789***********9888....889999999987777766.45555554 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.3e-05
                  EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 141 vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEif 199
                  +  +sDfG a +  ++++yv+  + +l     +pE+ +e +  +  +sD+Ws G  ++Ei+
   CCE29213.1 295 KLTLSDFGTAFRPADKSRYVSYADLEL----RPPEASFEPEtpLDFASDIWSLGCAIFEIL 351
                  567899999999988888887776655....478888877766899*************97 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.42
                  HHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 232 eelyelmkkcweedpeeRptfselv 256
                  +++ +l+++ ++ +p++Rp++s+++
   CCE29213.1 441 AAVLKLLRDMFAWRPSDRPNISKVL 465
                  5678899999999******999886 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00044         2      17      65 ..      84     132 ..      72     141 .. 0.80
   2 !    6.9   0.0   0.00075       3.4     181     243 ..     294     350 ..     284     356 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00044
  Kinase-like  17 gellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqela 65 
                  ++ l++g +s ++++ d+et +++a+kv + +s+ s+ d+     q la
   CCE29213.1  84 VHKLGHGTFSTIWLALDEETRKYVAIKVEIAQSDGSEGDILTEISQSLA 132
                  556999*****************************99998665555555 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00075
  Kinase-like 181 gglmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyri 243
                   +l l +f+  +r  +k +  s     + PpE   +     +  +t   ++ d W lG +i+ i
   CCE29213.1 294 AKLTLSDFGTAFRPADKSRYvSYADLELRPPEASFE-----P--ETPLDFASDIWSLGCAIFEI 350
                  568888998888866666543777788888886555.....4..7888999***********98 PP

>> Macscav_rec  Macrophage scavenger receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   7.6e-05      0.34      20      41 ..     220     245 ..     217     250 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.6e-05
  Macscav_rec  20 hFqNfSvtt....dQrfndvLlQLst 41 
                   FqNfS+ t    d  + +vLlQL+t
   CCE29213.1 220 GFQNFSADThravDIHLRNVLLQLTT 245
                  6*****987555578999******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3443.52
//
Query:       CCE29214.1  [L=465]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-20   71.6   0.0    3.5e-09   36.4   0.0    2.4  2  Pkinase      Protein kinase domain
      3e-07   30.0   0.1    0.00014   21.2   0.0    3.1  3  Pkinase_Tyr  Protein tyrosine kinase
     0.0095   15.3   0.0       0.27   10.5   0.0    2.2  2  Kinase-like  Kinase-like
  ------ inclusion threshold ------
      0.049   13.0   0.0      0.079   12.3   0.0    1.3  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   7.8e-13   3.5e-09       1     132 [.      49     189 ..      49     201 .. 0.78
   2 !   32.8   0.0   9.9e-12   4.4e-08     159     264 .]     273     420 ..     247     420 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 7.8e-13
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.....HHHHHHHHHHHHHS..CTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHH. CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.....kkvlrEikilkklk..hpnivrlyevfee.kdelylvleyveggeladlle. 90 
                 y+ ++klG+G f++V  a+++et+k vA+K+   +++ ++ +     +++l+  ki +  k   p ++  +e+     ++ +lv+  ++++  +   + 
  CCE29214.1  49 YRIVHKLGSGPFSEVWLAIHEETHKYVAIKVGIAQSDGSEGQiltkiSHILANSKIGNDKKllVPTLLDRFEISGPkGTHPCLVTLPAQCTLENAKFKa 147
                 67889**************************99999998887555554444444444333333555555555544467888999999998865555553 PP

                 HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase  91 rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid 132
                   g ++ + a+++a+q++ +++ +H++g  H Dl   N+L++
  CCE29214.1 148 SGGLFQLDVARSLAAQLAIAVSIVHKNGYAHGDLDLRNVLLQ 189
                 5666************************************97 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 9.9e-12
                 SCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS..................... CS
     Pkinase 159 gtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei..................... 233
                 +++  ++PEvl   e++ + ++D+WslG+++++ll g  + +g   +   e  ++q    +++ g    e +++++e                      
  CCE29214.1 273 ADRALRPPEVLlePETPLDFASDIWSLGCLIFSLLGGDSLIQGCWVRP-GEITAQQ----VELSGhMPPEWWRRWEERpewytedgeplfgpeearpwe 366
                 5677899****8777889************************555444.3344444....2333321223334444445558889************** PP

                 .......................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 .......................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                           +++ll+++l+++p++R+ ++++l+++++
  CCE29214.1 367 rrfeesvqkpretsgmetlaedeLAAVLKLLRDILAWKPSERPNISKVLKSDWM 420
                 ********************98888899*************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.2e-08   0.00014       3     137 ..      51     189 ..      49     196 .. 0.77
   2 !    4.6   0.0    0.0038        17     173     200 ..     279     308 ..     263     335 .. 0.83
   3 ?   -1.0   0.0      0.19   8.7e+02     231     256 ..     390     415 ..     364     417 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.2e-08
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTT.....B--EEEEEE....SSSSEEEEEE--TTEBHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpn.....ivkllgvct....keepllivteyvkgGdLlkf 91 
                  + +klG+G f++V+ +  +    +++  Va+K+  ++++ +e + l++  +i+ + k  n     +  ll        k+ + ++vt + ++ +L++ 
   CCE29214.1  51 IVHKLGSGPFSEVWLAIHE----ETHKYVAIKVGIAQSDGSEGQILTKISHILANSKIGNdkkllVPTLLDRFEisgpKGTHPCLVT-LPAQCTLENA 143
                  6789************999....88999****9999999998888888888887654433111223344544445554444466665.6667788877 PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLls 137
                    k +   ++l+   s+a+q+A +++ ++++ + H dl  rNvLl+
   CCE29214.1 144 KFKASGGLFQLDVARSLAAQLAIAVSIVHKNGYAHGDLDLRNVLLQ 189
                  666669999***********************************97 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0038
                  -HHHHHHSE..EEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 173 apEslkekk..ftsksDvWsfGvllwEift 200
                  +pE+l e +  +  +sD+Ws G l++ ++ 
   CCE29214.1 279 PPEVLLEPEtpLDFASDIWSLGCLIFSLLG 308
                  678877766568899*********998765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.19
                  BHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 231 peelyelmkkcweedpeeRptfselv 256
                   +++ +l+++ ++ +p+eRp++s+++
   CCE29214.1 390 LAAVLKLLRDILAWKPSERPNISKVL 415
                  5667889999999********99986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.019        87      17      55 ..      52      90 ..      39     107 .. 0.82
   2 !   10.5   0.0   6.1e-05      0.27     182     243 ..     251     306 ..     241     310 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.019
  Kinase-like 17 gellkkgdrsvvfevkdqetgeplavkvfllpseaskkd 55
                 ++ l+ g +s v+++  +et +++a+kv++ +s+ s+ +
   CCE29214.1 52 VHKLGSGPFSEVWLAIHEETHKYVAIKVGIAQSDGSEGQ 90
                 456899999************************998765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 6.1e-05
  Kinase-like 182 glmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyri 243
                  +l l +f   +r  +k +  s+  +++ PpE+l +        +t   ++ d W lG  i+++
   CCE29214.1 251 KLTLSNFRTAFRPADKSRFvSQADRALRPPEVLLE-------PETPLDFASDIWSLGCLIFSL 306
                  67888888888877777766*************99.......678999*************86 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.8e-05     0.079     119     155 ..     156     192 ..     143     219 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
         Kdo 119 lkrallkavgrliaklhragvnHadlyaknillqqee 155
                 + r l  +++ +++  h+ g  H+dl  +n+llq  +
  CCE29214.1 156 VARSLAAQLAIAVSIVHKNGYAHGDLDLRNVLLQLPA 192
                 667788999*************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3465.13
//
Query:       CCE29215.1  [L=222]
Description: uncharacterized protein CPUR_02908 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1903.31
//
Query:       CCE29216.1  [L=186]
Description: uncharacterized protein CPUR_02909 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1611.54
//
Query:       CCE29217.1  [L=469]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-17   62.8   0.0    1.5e-09   37.7   0.0    2.8  2  Pkinase      Protein kinase domain
    2.3e-06   27.1   0.0    0.00016   21.0   0.0    2.4  2  Pkinase_Tyr  Protein tyrosine kinase
     0.0035   16.7   0.2      0.017   14.5   0.0    2.0  2  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   2.5e-13   1.5e-09       1     132 [.      50     190 ..      50     203 .. 0.77
   2 !   21.3   0.0   2.4e-08   0.00015     134     264 .]     250     424 ..     239     424 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 2.5e-13
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.......HHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHH. CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.......kkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladlle. 90 
                 y+ ++ +G+G  ++V  a+++et+k vA+K+   +++ ++ +       + + + ++  kkl  p ++  +e+ ++  ++ +lv+  +++  l+d+l+ 
  CCE29217.1  50 YRIVHSIGHGPWSTVWLAIDEETHKYVAIKVGIAQSDGNEGKilteisqSLAKSDVSKDKKLMIPTVLDQFEIRSRkGTHPCLVTLPARCS-LEDALSn 147
                 677899*************************999988887763433332223333333444445556655555554567777888777755.*****96 PP

                 .HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase  91 .rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid 132
                    ++++ + a+++a+q++ +++ +H+kg  H Dl  +N+L++
  CCE29217.1 148 sSTRIFQLDVARSLAAQLAIAVSIVHDKGYAHGDLHLKNLLLQ 190
                 55556************************************97 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 2.4e-08
                 TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-....STTTSSHHHHHHHHHHTHHHHHHHCT....S CS
     Pkinase 134 kgelKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkp....pfsgekgkekvekeldqlekilkilg....e 222
                 +++l ++DFG a +   +s++ s  + +  ++PE l   e++   ++D+Wsl+ +++ ll        pf++  + + ++ el          g     
  CCE29217.1 250 EAKLTLSDFGAAFRPADESRFVS-QVCPGLCPPEALfePERPLNFASDIWSLAGLILPLLGIYShigdPFAAPGEITAQQVEL---------SGpmppA 338
                 46699*******99999986554.556999******9777899*********9999888754431111555333333333333.........3321111 PP

                 HH...HHHTTS...............................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 223 tkeklpeasei...............................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                     ++++++                                                   +++ll+++lk++p +R  ++++lq++++
  CCE29217.1 339 ---WWRKWEQRpmwytengepllaakreretwtweqqfewlvqqprqasgmetlaedeMAALTKLLRDMLKWKPCERANISKVLQSDWM 424
                 ...222222225556668899999999999*************************99888999*************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.7e-08   0.00016       3     137 ..      52     190 ..      50     198 .. 0.76
   2 !    3.4   0.0    0.0065        39     142     192 ..     253     301 ..     237     320 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.7e-08
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.......HHHHHH.HHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.......keelle.eakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfL 92 
                  + +++G+G +++V+ +  +    +++  Va+K+  ++++ +e       +++l + +++  kkl  p ++    + ++++++  ++ + +  +L++ L
   CCE29217.1  52 IVHSIGHGPWSTVWLAIDE----ETHKYVAIKVGIAQSDGNEgkilteiSQSLAKsDVSKDKKLMIPTVLDQFEIRSRKGTHPCLVTLPARCSLEDAL 145
                  56789**********9998....666777777765555555411111122222222455556667778888888888777777777799999****** PP

                  HHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr  93 rkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLls 137
                   +++++ ++l+   s+a+q+A +++ +++k + H dl  +N Ll+
   CCE29217.1 146 SNSSTRIFQLDVARSLAAQLAIAVSIVHDKGYAHGDLHLKNLLLQ 190
                  ***9999************************************97 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0065
                  EEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHH CS
  Pkinase_Tyr 142 vkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfG 192
                    +sDfG a +  +    +++  ++++   ++pE+l+e +  ++ +sD+Ws +
   CCE29217.1 253 LTLSDFGAAFRPAD----ESRFVSQVCPGLCPPEALFEPErpLNFASDIWSLA 301
                  56778887766633....3334456777889******988889********75 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.8e-06     0.017     104     155 ..     140     193 ..     109     200 .. 0.88
   2 ?   -0.6   0.1      0.11   6.9e+02       3      51 ..     349     396 ..     347     414 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.8e-06
         Kdo 104 dLedllakwae..laeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 +Led l + ++  ++  + r l  +++ +++  h+ g  H+dl  kn+llq   
  CCE29217.1 140 SLEDALSNSSTriFQLDVARSLAAQLAIAVSIVHDKGYAHGDLHLKNLLLQLPS 193
                 788888877777888899999*****************************9875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.11
         Kdo   3 vwakqgkvveeaegRrttwfvvaekvnaalrkyyrggllgklskdlyrf 51 
                 + +++g+ +  a+ +r tw+ ++++ ++  ++ +    ++ l+ d++ +
  CCE29217.1 349 WYTENGEPLLAAKRERETWTWEQQF-EWLVQQPRQASGMETLAEDEMAA 396
                 5667777888889999999999999.89888888888888888886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 3912.62
//
Query:       CCE29218.1  [L=239]
Description: uncharacterized protein CPUR_02911 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1973.80
//
Query:       CCE29219.1  [L=206]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-05   23.5   0.1     0.0049   16.3   0.0    2.4  2  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.7e-07    0.0049       1      50 [.      48      95 ..      48     108 .. 0.85
   2 !    5.0   0.0   0.00077        14     114     145 ..     132     199 ..     130     204 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.7e-07
                EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHH CS
     Pkinase  1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEik 50
                y+ + klG G+ ++V  a+++et+k vA+K+   +++ ++ e  vl+Ei+
  CCE29219.1 48 YRIVYKLGYGTWSCVWLAIDEETRKYVAIKVGIAQSDGSEGE--VLAEIS 95
                567789*************************99999998776..899986 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.00077
                 HHHTTEE-SS-SGGGEEEET....................................TTEEEE-SGTTS CS
     Pkinase 114 lHskgiiHrDlKpeNiLide....................................kgelKitDFGla 145
                 +H+kg  H Dl  +N+L++                                     +++l+++DFG a
  CCE29219.1 132 VHEKGYAHGDLHLNNLLLQLpsslddmsveklyetygkpliypvrlsvpghdinlaEAKLMLSDFGTA 199
                 699**************994356766676666666666666666666666666555555777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1698.71
//
Query:       CCE29220.1  [L=230]
Description: uncharacterized protein CPUR_02913 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1975.82
//
Query:       CCE29221.1  [L=108]
Description: uncharacterized protein CPUR_02914 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 835.07
//
Query:       CCE29222.1  [L=107]
Description: uncharacterized protein CPUR_02915 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0058   17.2   2.8       0.01   16.5   2.7    1.6  1  DUF4404       Domain of unknown function (DUF4404)
     0.0097   15.5   0.9     0.0097   15.5   0.9    2.1  2  UPF0181       Uncharacterised protein family (UPF0181)
  ------ inclusion threshold ------
      0.076   12.4   0.2        2.1    7.9   0.0    2.4  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I


Domain annotation for each model (and alignments):
>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   2.7   1.7e-06      0.01       7      53 ..      22      69 ..      12      75 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.7e-06
     DUF4404  7 kLheeLeqnesldeetralLeslaedieellaeedaaaeeee.laerl 53
                +L++ L+q+e++ e+++a+L++l++ i++ll ++ +   + + +a++l
  CCE29222.1 22 ALQDGLAQSEAAREQQAAQLQELHQPIQQLLGQSFTSRYAMKsVADQL 69
                69999*************************988766555544466665 PP

>> UPF0181  Uncharacterised protein family (UPF0181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   3.0       0.3   1.8e+03      20      41 ..      19      41 ..      11      47 .. 0.62
   2 !   15.5   0.9   1.6e-06    0.0097      17      43 ..      45      71 ..      33      77 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.3
     UPF0181 20 IqeLmaqGmssgeAIa.lVAqel 41
                Iq+ ++ G+  +eA + + A++l
  CCE29222.1 19 IQNALQDGLAQSEAAReQQAAQL 41
                77777777777776431444444 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.6e-06
     UPF0181 17 VEkIqeLmaqGmssgeAIalVAqelRe 43
                 + Iq+L+ q+ +s  A + VA++lR 
  CCE29222.1 45 HQPIQQLLGQSFTSRYAMKSVADQLRL 71
                467***********************6 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.018   1.1e+02      16      36 ..      15      35 ..      13      35 .. 0.92
   2 ?    7.9   0.0   0.00034       2.1      29      42 ..      61      74 ..      43      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.018
  HTH_Tnp_ISL3 16 leayilelllesrsvkavArq 36
                  l+ayi  +l+++ + +++Ar+
    CCE29222.1 15 LQAYIQNALQDGLAQSEAARE 35
                  799****************95 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00034
  HTH_Tnp_ISL3 29 svkavArqlgvSwt 42
                  ++k+vA+ql++S++
    CCE29222.1 61 AMKSVADQLRLSPD 74
                  69**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1322  (0.0737353); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 785.33
//
Query:       CCE29223.1  [L=68]
Description: uncharacterized protein CPUR_02916 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 515.57
//
Query:       CCE29224.1  [L=539]
Description: uncharacterized protein CPUR_02917 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00073   19.4   0.1     0.0019   18.1   0.0    1.7  2  DUF4939         Domain of unknown function (DUF4939)
  ------ inclusion threshold ------
      0.027   14.7   2.7      0.073   13.4   0.5    2.6  3  Retrotrans_gag  Retrotransposon gag protein
      0.087   12.8   0.6          4    7.4   0.4    2.4  2  DUF725          Protein of unknown function (DUF725)
       0.11   12.5   0.5       0.27   11.2   0.1    1.8  2  DUF3038         Protein of unknown function (DUF3038)


Domain annotation for each model (and alignments):
>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.1   9.6e+03      27      45 ..     160     179 ..     148     182 .. 0.75
   2 !   18.1   0.0   4.2e-07    0.0019      26     107 ..     222     306 ..     208     311 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.1
     DUF4939  27 pfpetfdGdt.drlpefivq 45 
                 p pe +d ++  rl ef++ 
  CCE29224.1 160 PTPEDLDSHVkARLSEFLIT 179
                 66788877752589999876 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 4.2e-07
     DUF4939  26 ipfpetfdGdtdrlpefivqtlsymlvdektf.ssdalkvtflitrltGealewvl..pyikkdspllndyraflaemkrvfGwe 107
                 i  p +f+Gd  ++ e+  ++++y+    + f ssd+ k+ +l + l+G a+ w +      k   +l+ ++a+ +e ++ f  +
  CCE29224.1 222 IRKPPRFNGDRTKFREWWSRVTTYLEYYGDAFpSSDQYKINWLGSYLQGIAQSWHFvrDTHMKRKGVLDTWTAYSTEFQKHFKDK 306
                 56799*******************97777666489*******************6521334566779999999999999999755 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         2     9e+03      12      25 ..      74      87 ..      69     114 .. 0.71
   2 ?   -0.3   0.0       0.3   1.4e+03      61      88 ..     233     262 ..     227     265 .. 0.83
   3 ?   13.4   0.5   1.6e-05     0.073       6      49 ..     267     312 ..     264     319 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2
  Retrotrans_gag 12 kswlkslvarsida 25
                    +sw+++ + +++++
      CCE29224.1 74 QSWIRNAQGNDPYS 87
                    68999988888886 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.3
  Retrotrans_gag  61 esvreYvtrfktladqlde..vlteeakie 88 
                      ++re + r +t++ +  +  ++++++ki+
      CCE29224.1 233 TKFREWWSRVTTYLEYYGDafPSSDQYKIN 262
                     578999999999999999988888888885 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 1.6e-05
  Retrotrans_gag   6 slegaAkswlkslvarsida..sesWkdlkkaflktflpserkdql 49 
                      l+g A+sw+    +   ++   ++W+ ++++f+k+f +++++++ 
      CCE29224.1 267 YLQGIAQSWHFVRDTHMKRKgvLDTWTAYSTEFQKHFKDKAEERRN 312
                     69999***987666666666889****************7777665 PP

>> DUF725  Protein of unknown function (DUF725)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.4    0.0009         4      18      68 ..     293     343 ..     286     347 .. 0.91
   2 ?    2.9   0.0     0.023   1.1e+02       8      35 ..     403     430 ..     402     453 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0009
      DUF725  18 eqyeaeytkCistaeeekaeidekyeeerqqlessakeicsalqkCdsled 68 
                 ++y++e++k  ++ +ee+++  + y+++++  + +a+++ +a q+C++ + 
  CCE29224.1 293 TAYSTEFQKHFKDKAEERRNEVKAYKKAVRASKIAAESSKNAAQECEKFKR 343
                 78********************************************98765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.023
      DUF725   8 eylpelnevaeqyeaeytkCistaeeek 35 
                 e+l+++++v + ye+ +  C stae++ 
  CCE29224.1 403 EFLNAVSDVGQSYENWLVVCASTAEDSE 430
                 688999******************9876 PP

>> DUF3038  Protein of unknown function (DUF3038)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1     5e+03      54      88 ..      77     111 ..      73     133 .. 0.76
   2 ?   11.2   0.1   6.1e-05      0.27     108     143 ..     291     326 ..     277     329 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
     DUF3038  54 lrrssqrkkldveeakalvliichlakqlqeliRq 88 
                 +r+++++++ +   ++a   i+c   +++   +R+
  CCE29224.1  77 IRNAQGNDPYSSSTIRASYQIACARYQEMVHAVRS 111
                 57788888889999999999999988888777775 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 6.1e-05
     DUF3038 108 lLseYlerFrslyqermnerrekvaallseeeleel 143
                  ++ Y  +F+++++++ +err++v+a+++  + +++
  CCE29224.1 291 TWTAYSTEFQKHFKDKAEERRNEVKAYKKAVRASKI 326
                 699************************887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1317  (0.0734564); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 3775.12
//
Query:       CCE29225.1  [L=281]
Description: related to ATPases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-23   80.1   0.0    1.2e-22   79.4   0.0    1.3  1  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   6.6e-27   1.2e-22       9      67 .]     179     237 ..     169     237 .. 0.93

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 6.6e-27
  PhoLip_ATPase_N   9 nekkkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqisplspvtti 67 
                      ++kk y+sN I++s+Yt++ F+pk+L+ qF+++ N+YFLv+ ilq++P++s+++++tti
       CCE29225.1 179 RSKKPYVSNFIRSSRYTVYDFVPKQLLFQFSKLGNFYFLVMGILQVTPGLSTVGRWTTI 237
                      44679****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2228.83
//
Query:       CCE29226.1  [L=432]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-20   72.1   0.0    5.1e-09   35.9   0.0    2.3  2  Pkinase      Protein kinase domain
    1.4e-09   37.6   0.0    6.9e-05   22.3   0.0    2.8  3  Pkinase_Tyr  Protein tyrosine kinase
     0.0034   16.8   0.0        3.1    7.0   0.0    2.8  3  Kinase-like  Kinase-like
  ------ inclusion threshold ------
      0.026   13.9   0.0      0.049   13.0   0.0    1.4  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.1e-12   5.1e-09       3     132 ..      24     162 ..      22     181 .. 0.75
   2 !   34.0   0.0   4.3e-12   1.9e-08     134     264 .]     225     403 ..     219     403 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.1e-12
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.......HHHHHHHHHHHHHSCTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke.......kkvlrEikilkklkhpnivrlyevfee....kdelylvleyveggeladlle 90 
                  ++klG+G+f+++  a+++et+k vA+K+   +++ ++ +       + + + i+  kkl  p   +l++ fe      ++ +lv+  ++++  +  ++
  CCE29226.1  24 IVHKLGHGTFSTIWLAIDEETRKYVAIKVEIAQSDGSEGDvltdisqSLANSNISNDKKLLIP---TLLDRFEIsgpeGTHPCLVTLPARHNLKNAQYN 119
                 6789************************99999888877744333222222222222333333...444444435656788889888888775555555 PP

                 .HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase  91 .rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid 132
                      ++ + a+++a+q++ +++ +H+kg  H D+   NiL++
  CCE29226.1 120 aSTELFQLDVARSLAAQLAIAVSIVHEKGYAHGDIHLRNILLQ 162
                 35555************************************97 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 4.3e-12
                 TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHH CS
     Pkinase 134 kgelKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpea 230
                 +++l ++DFG a +   +s      ++ e ++PE     e++ + ++D+WslG+ ++e+l ++p+  g  + ++   e     +++++    ++ ++++
  CCE29226.1 225 EAKLTLSDFGTAFRPADKS-RYASYADLELRPPEASfePETPLDFASDIWSLGCAIFEILGNRPLIDGGPTIDDGDFERPGEITVRQVELSGRMPSAWW 322
                 56799*********99998.5666789********98777899****************9999999977766655555555444444443333333333 PP

                 TTS...............................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 231 sei...............................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 +                                                    +++ll++++++ p++R+ ++++l+++++
  CCE29226.1 323 RRWkerqkwyteegrpllhanrtwpwerrleewvqaprqtsgmetlaedeLAAVLKLLRDMFAWRPSDRPNISKVLSSDWM 403
                 3334447889999**********************************98888899************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.5e-08   6.9e-05       4     139 ..      25     164 ..      23     208 .. 0.68
   2 !   11.9   0.0   2.3e-05       0.1     141     199 ..     227     283 ..     219     293 .. 0.78
   3 ?   -1.8   0.0      0.33   1.5e+03     232     256 ..     374     398 ..     356     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.5e-08
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTT.....B--EEEEEE...SSSS.EEEEEE--TTEBHHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpn.....ivkllgvct...keep.llivteyvkgGdLlkfL 92 
                   +klG+G+f++++ +  +    +++  Va+K+  ++++ +e + l++  + + + +  n     i  ll        e++  ++v  + +  +L++  
   CCE29226.1  25 VHKLGHGTFSTIWLAIDE----ETRKYVAIKVEIAQSDGSEGDVLTDISQSLANSNISNdkkllIPTLLDRFEisgPEGThPCLV-TLPARHNLKNAQ 117
                  579************988....788889999887777776644444444444333222211121444555444444444425555.567777999999 PP

                  HHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEET CS
  Pkinase_Tyr  93 rkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsen 139
                   + ++e ++l+   s+a+q+A +++ +++k + H d+  rN+Ll+  
   CCE29226.1 118 YNASTELFQLDVARSLAAQLAIAVSIVHEKGYAHGDIHLRNILLQLP 164
                  999899999999********************************844 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.3e-05
                  EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 141 vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEif 199
                  +  +sDfG a +  ++++y +  + +      +pE+ +e +  +  +sD+Ws G  ++Ei+
   CCE29226.1 227 KLTLSDFGTAFRPADKSRYASYADLE----LRPPEASFEPEtpLDFASDIWSLGCAIFEIL 283
                  56789999998887777776655544....4588988887767899*************97 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.33
                  HHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 232 eelyelmkkcweedpeeRptfselv 256
                  +++ +l+++ ++ +p++Rp++s+++
   CCE29226.1 374 AAVLKLLRDMFAWRPSDRPNISKVL 398
                  5678899999999******999886 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0014       6.4      18      56 ..      26      64 ..      13      82 .. 0.84
   2 ?   -0.7   0.0      0.16   7.2e+02     144     178 ..     129     162 ..     112     185 .. 0.77
   3 !    7.0   0.0    0.0007       3.1     181     243 ..     226     282 ..     218     287 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0014
  Kinase-like 18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkdl 56
                 + l++g +s ++++ d+et +++a+kv + +s+ s+ d+
   CCE29226.1 26 HKLGHGTFSTIWLAIDEETRKYVAIKVEIAQSDGSEGDV 64
                 5689999*************************9998776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.16
  Kinase-like 144 iarlllTlqlirlaanLqakglvhgkftvdnllld 178
                  +ar  l +ql   +   ++kg  hg+++ +n+ll+
   CCE29226.1 129 VARS-LAAQLAIAVSIVHEKGYAHGDIHLRNILLQ 162
                  5554.44777777888999*************997 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0007
  Kinase-like 181 gglmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyri 243
                   +l l +f+  +r  +k +  s     + PpE   +     +  +t   ++ d W lG +i+ i
   CCE29226.1 226 AKLTLSDFGTAFRPADKSRYaSYADLELRPPEASFE-----P--ETPLDFASDIWSLGCAIFEI 282
                  568889998888888877763555577778876544.....4..7888999***********98 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.1e-05     0.049     115     155 ..     125     165 ..     112     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 ++  + r l  +++ +++  h+ g  H+d+  +nillq   
  CCE29226.1 125 FQLDVARSLAAQLAIAVSIVHEKGYAHGDIHLRNILLQLPS 165
                 556678889999*************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3054.50
//
Query:       CCE29227.1  [L=435]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-20   72.2   0.0    2.5e-09   36.9   0.0    2.4  2  Pkinase      Protein kinase domain
    5.1e-06   26.0   0.0      0.024   14.0   0.0    3.2  3  Pkinase_Tyr  Protein tyrosine kinase
     0.0098   15.2   0.0        4.2    6.6   0.0    2.6  3  Kinase-like  Kinase-like
  ------ inclusion threshold ------
       0.04   13.3   0.2      0.085   12.2   0.0    1.6  2  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
        3.3    8.0   4.3         17    5.8   1.4    2.9  3  Pigment_DH   Pigment-dispersing hormone (PDH)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   1.1e-11     4e-08       1     132 [.      48     188 ..      48     204 .. 0.80
   2 !   36.9   0.0   7.1e-13   2.5e-09     134     264 .]     250     421 ..     244     421 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.1e-11
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE............SSEEEEEEE--TTEBHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee............kdelylvleyveggelad 87 
                 y+ l+ lG G  ++V  a+++et+k vA+K+   +++ ++ +  +l+Ei+  ++l ++n+ + ++ +                + +lv+  ++++ l+d
  CCE29227.1  48 YRILHLLGGGVWSEVWLAIDEETRKYVAIKVGIAQSDGSEGD--ILTEIS--QSLASSNVSNDKKLMIPtvldrfefrgpkGIHPCLVTLPARCT-LED 141
                 677899*************************99999999876..888875..4444444444444444444445555775556667888888877.666 PP

                 HHH..HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase  88 lle..rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid 132
                 +l   r++ ++ + a+++a+q++ +++ +H+kg  H Dl  +N+L++
  CCE29227.1 142 ALYeaRRRLFQLDLARSLAAQLAIAVSIVHEKGYAHGDLHLNNFLLQ 188
                 666577788************************************97 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 7.1e-13
                 TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HH CS
     Pkinase 134 kgelKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpe 229
                 +++l ++DFG a +   +s      g+   ++PE l   e++ + ++D+WslG +++ ll+ +p+ +g  g     + + q    +++ g   +  +++
  CCE29227.1 250 EAKLTLSDFGAAFRPADKS-RFISYGDLALRPPEALfePEKPLDFASDIWSLGFLIFRLLAVRPLIAGGGGFALPGQVTAQ---HFELSGrMPTAWWRK 344
                 56799*******9999988.66678***********9778999************************88887766666666...444444322333344 PP

                 HTTS..........................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 230 asei..........................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++e                                              +++ll+++l+++p++R+ ++++l+++++
  CCE29227.1 345 WKERpewytedgepvedepwswerrfeewvqeprqtremeklaedeLAAVLKLLRSMLAWKPSERPDISKVLKSDWM 421
                 44445558889********************************98888899*************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   6.6e-06     0.024       5     137 ..      52     188 ..      48     194 .. 0.70
   2 !    7.3   0.0    0.0007       2.5     141     199 ..     252     308 ..     225     313 .. 0.74
   3 ?    0.1   0.1      0.11   4.1e+02     228     256 ..     388     416 ..     365     418 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.6e-06
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHH.HHHHTS-BTT.....B--EEEEEE...SSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleea.kimkklkhpn.....ivkllgvct...keepllivteyvkgGdLlkfLr 93 
                  + lG G +++V+ +  +    +++  Va+K+  ++++ +e  ++l+e+ + + + +  n     i  +l        ++ +  ++ + +  +L++ L 
   CCE29227.1  52 HLLGGGVWSEVWLAIDE----ETRKYVAIKVGIAQSDGSE-GDILTEIsQSLASSNVSNdkklmIPTVLDRFEfrgPKGIHPCLVTLPARCTLEDALY 144
                  67899999999999887....7888899999877777774.34444431344433333311111233333333433333344555688889******* PP

                  HTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr  94 kkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLls 137
                  + +++ ++l+   s+a+q+A +++ +++k + H dl   N Ll+
   CCE29227.1 145 EARRRLFQLDLARSLAAQLAIAVSIVHEKGYAHGDLHLNNFLLQ 188
                  **888889999999****************************97 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0007
                  EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 141 vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEif 199
                  +  +sDfG a +  ++++  + ++        +pE+l+e +  +  +sD+Ws G l++ ++
   CCE29227.1 252 KLTLSDFGAAFRPADKSRFISYGDL----ALRPPEALFEPEkpLDFASDIWSLGFLIFRLL 308
                  5567777777766555555544433....34589***9987779***********999776 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.11
                  TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 228 ekcpeelyelmkkcweedpeeRptfselv 256
                  e+  +++ +l+++ ++ +p+eRp++s+++
   CCE29227.1 388 EDELAAVLKLLRSMLAWKPSERPDISKVL 416
                  3345678899999***********99986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0026       9.5      12      65 ..      49      99 ..      39     109 .. 0.78
   2 ?   -1.9   0.0      0.45   1.6e+03     144     178 ..     155     188 ..     138     203 .. 0.73
   3 !    6.6   0.0    0.0012       4.2     181     244 ..     251     308 ..     244     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0026
  Kinase-like 12 rtlvrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqela 65
                 r l   +ll+ g  s v+++ d+et +++a+kv++ +s+ s+ d+     q la
   CCE29227.1 49 RIL---HLLGGGVWSEVWLAIDEETRKYVAIKVGIAQSDGSEGDILTEISQSLA 99
                 444...57788888999************************9998666666665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.45
  Kinase-like 144 iarlllTlqlirlaanLqakglvhgkftvdnllld 178
                  +ar  l +ql   +   ++kg  hg+++ +n+ll+
   CCE29227.1 155 LARS-LAAQLAIAVSIVHEKGYAHGDLHLNNFLLQ 188
                  4554.447777777888999999999999999986 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0012
  Kinase-like 181 gglmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriw 244
                   +l l +f+a +r  +k +  s    ++ PpE l +     +++     ++ d W lG  i+r+ 
   CCE29227.1 251 AKLTLSDFGAAFRPADKSRFiSYGDLALRPPEALFE-----PEK--PLDFASDIWSLGFLIFRLL 308
                  578999***99999999998788889******8877.....444..566899**********975 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.4e-05     0.085     115     155 ..     151     191 ..     137     198 .. 0.83
   2 ?   -3.1   0.1       1.1     4e+03       8      24 ..     371     387 ..     361     405 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.4e-05
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 ++  l r l  +++ +++  h+ g  H+dl   n+llq   
  CCE29227.1 151 FQLDLARSLAAQLAIAVSIVHEKGYAHGDLHLNNFLLQLPS 191
                 66678889999**************************9875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.1
         Kdo   8 gkvveeaegRrttwfvv 24 
                 +++v+e+ + r    ++
  CCE29227.1 371 EEWVQEPRQTREMEKLA 387
                 45555554333333322 PP

>> Pigment_DH  Pigment-dispersing hormone (PDH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   1.4    0.0048        17       4      17 ..     182     195 ..     178     196 .. 0.86
   2 ?   -2.6   0.0       2.2   7.9e+03       8      15 ..     212     219 ..     211     220 .. 0.86
   3 ?    1.5   0.1      0.11   4.1e+02       9      17 ..     227     235 ..     227     236 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0048
  Pigment_DH   4 LINfLLsLPKdMlD 17 
                 L NfLL LP +  D
  CCE29227.1 182 LNNFLLQLPSSLDD 195
                 66*******99877 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.2
  Pigment_DH   8 LLsLPKdM 15 
                 LL  P dM
  CCE29227.1 212 LLEYPEDM 219
                 8999***9 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.11
  Pigment_DH   9 LsLPKdMlD 17 
                 LsLPK   D
  CCE29227.1 227 LSLPKYLVD 235
                 9****8777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3090.14
//
Query:       CCE29228.1  [L=299]
Description: uncharacterized protein CPUR_02921 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-13   49.5   0.0    6.7e-13   48.6   0.0    1.3  1  Pkinase         Protein kinase domain
    1.9e-10   40.5   0.0    3.5e-10   39.6   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0012   18.3   0.0     0.0017   17.7   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0093   15.9   0.0      0.016   15.2   0.0    1.3  1  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.082   12.5   0.0       0.12   11.9   0.0    1.4  1  Choline_kinase  Choline/ethanolamine kinase
        0.1   11.9   0.0       0.17   11.2   0.0    1.5  1  Kinase-like     Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   2.2e-16   6.7e-13      43     198 ..      57     207 ..      47     241 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 2.2e-16
                 HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEE CS
     Pkinase  43 kkvlrEikilkklk...hpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelK 138
                  +++ E ++++ l    hpni+r++ ++ e     +++e +e + l+++l ++ + s+++  ++++q++++l+++   g++H Dl peNiL+  +++++
  CCE29228.1  57 AQITYEKSMHELLIkhpHPNIIRCILSIPEG----FFMERMEAN-LQTRLDQDYAPSNRTKARWITQLASALSWIEGLGFVHGDLRPENILLTANDNIR 150
                 56777777777665567*******9999864....789****66.99999999999999999************************************* PP

                 E-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 139 itDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfs 198
                 ++DF+++ ++ ++    +  + ++    E  k  + ++ +  ++lG  +y++ +g+ p+ 
  CCE29228.1 151 LADFDVSVKIGERL---QTAVEPYAKLKEAFKFPDAGPITEQFALGSCIYTIRFGHIPLD 207
                 ********999865...3444444455677777777777777777777777777777777 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   1.2e-13   3.5e-10      50     244 ..      66     242 ..      46     249 .. 0.72

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.2e-13
                  HHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr  50 eeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf 147
                  +  +++ k  hpni++++  +       + +e ++  +L++ L ++   + + +++ ++++q+A++++++e   +vH dl+  N+Ll+ n+ ++++Df
   CCE29228.1  66 H--ELLIKHPHPNIIRCILSIP----EGFFMERMEA-NLQTRLDQD--YAPSNRTKARWITQLASALSWIEGLGFVHGDLRPENILLTANDNIRLADF 154
                  2..4577788899998765554....4578999875.89****997..788889999***************************************** PP

                  TTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-S CS
  Pkinase_Tyr 148 GLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcwee 244
                   ++ +i ++ ++ ++  akl       E++k       +  ++ G +++ i   g+ p+ +l++ + ++kl +++  ++ +   +e+ ++  +cw+ 
   CCE29228.1 155 DVSVKIGERLQTAVEPYAKL------KEAFKFPDAGPITEQFALGSCIYTIRF-GHIPLDELEPLDRIRKLMDHEYPSTEN--DAEFGDVTLRCWHG 242
                  ****9944433333333333......366666666666777777777777655.778887777766666665554444443..46777777777776 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.8e-07    0.0017     104     177 ..      96     165 ..      88     190 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.8e-07
         Kdo 104 dLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradr 177
                 +L++ l +   ++++ k++ + +++ + + +  +g  H+dl + nill +++    +i l D+d + +   + +
  CCE29228.1  96 NLQTRLDQDYAPSNRTKARWITQLASALSWIEGLGFVHGDLRPENILLTAND----NIRLADFDVSVKIGERLQ 165
                 56677776555999999999*******************************9....99999**98877655555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.2e-06     0.016     145     185 ..     108     148 ..      82     158 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.2e-06
                 HHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TT CS
         APH 145 leeleeqvlaalaallpgelptvllHgDlhpgNllvdpddg 185
                   +  ++++ +la  l   +  +++HgDl+p N+l++++d+
  CCE29228.1 108 SNRTKARWITQLASALSWIEGLGFVHGDLRPENILLTANDN 148
                 34444445555555555578899**************4443 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.1e-05      0.12     140     172 ..     124     155 ..      51     159 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.1e-05
                     CHGG-EEEE-S--SGGGEEE.-CTTEEEE--GT CS
  Choline_kinase 140 elespvvfcHnDlqegNillnkeekklvlIDFE 172
                     +  + + f H Dl ++Nill + ++++ l DF 
      CCE29228.1 124 SWIEGLGFVHGDLRPENILL-TANDNIRLADFD 155
                     3345699*************.99999*****96 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.6e-05      0.17     153     200 ..     119     166 ..      58     219 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.6e-05
  Kinase-like 153 lirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl 200
                  l      +  +g vhg+++++n+ll  +  + l +f+  v+ g++ + 
   CCE29228.1 119 LASALSWIEGLGFVHGDLRPENILLTANDNIRLADFDVSVKIGERLQT 166
                  455555566789*******************************99883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2223.95
//
Query:       CCE29229.1  [L=144]
Description: uncharacterized protein CPUR_02922 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1072.80
//
Query:       CCE29230.1  [L=45]
Description: uncharacterized protein CPUR_02923 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       142  (0.00792013); expected 358.6 (0.02)
Passed bias filter:                      136  (0.00758548); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.26s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 361.11
//
Query:       CCE29231.1  [L=359]
Description: uncharacterized protein CPUR_02924 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00049   19.9   0.0    0.00086   19.2   0.0    1.3  1  DUF4939         Domain of unknown function (DUF4939)
  ------ inclusion threshold ------
      0.021   15.1   0.7      0.085   13.1   0.2    2.1  2  Retrotrans_gag  Retrotransposon gag protein
       0.07   13.0   2.5       0.11   12.3   2.5    1.3  1  Glyco_H_20C_C   Glycoside Hydrolase 20C C-terminal domain
      0.095   13.1   6.8       0.17   12.3   6.8    1.3  1  Alanine_zipper  Alanine-zipper, major outer membrane lipoprot


Domain annotation for each model (and alignments):
>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.9e-07   0.00086      26     109 ..      44     130 ..      30     133 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.9e-07
     DUF4939  26 ipfpetfdGdtdrlpefivqtlsymlvdektf.ssdalkvtflitrltGealewvl.pyik.kdspllndyraflaemkrvfGweed 109
                 i  p +f+Gd  ++ e+   +++y+    + f ssd+ k+ +l + l+G a+ w l +  + k   +l+ + a+ +e ++vf  + +
  CCE29231.1  44 IRKPPRFNGDRTKFREWWSTVTTYLEYYGDGFpSSDQYKINWLGSYLQGIAQSWHLvRDTQmKREGVLDTWAAYSTEFQEVFKDKAE 130
                 56699*******************97766666489*******************76244432567799************9976644 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.53   2.4e+03      62      87 ..      56      83 ..      50      88 .. 0.78
   2 ?   13.1   0.2   1.9e-05     0.085       6      47 ..      89     132 ..      85     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.53
  Retrotrans_gag 62 svreYvtrfktladqlde..vlteeaki 87
                    ++re + + +t++ +  +  ++++++ki
      CCE29231.1 56 KFREWWSTVTTYLEYYGDgfPSSDQYKI 83
                    6788888888888888887778888877 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.9e-05
  Retrotrans_gag   6 slegaAkswlkslvarsida..sesWkdlkkaflktflpserkd 47 
                      l+g A+sw+    ++  ++   ++W+ ++++f++ f ++++++
      CCE29231.1  89 YLQGIAQSWHLVRDTQMKREgvLDTWAAYSTEFQEVFKDKAEEQ 132
                     699******9876666666699****************966655 PP

>> Glyco_H_20C_C  Glycoside Hydrolase 20C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.5   2.5e-05      0.11      64     138 ..     106     178 ..      77     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.5e-05
  Glyco_H_20C_C  64 ekskelnelfelykkLakvLalKaelgirirkaYrakdreeLkklaeeelprllerldelrkahrelWmkenkpf 138
                    +++  l+    +  ++ +v + Kae + + +kaY++    +  k+a e+ ++ ++++++++++ +  W  + k +
     CCE29231.1 106 KREGVLDTWAAYSTEFQEVFKDKAEEQRNAVKAYKKAV--RASKVAAESSKNAAQECEKFKRMMELEWQGDTKLY 178
                    3356666677888999*******************966..556888899*******************9998876 PP

>> Alanine_zipper  Alanine-zipper, major outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   6.8   3.8e-05      0.17      22      64 ..     126     168 ..     116     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.8e-05
  Alanine_zipper  22 saadeAkskAdeAaarAenAeaaAeeAqkaAeeaneradrmFe 64 
                     ++ +e ++ A +A ++A  A++ A+e  k A + +e+ +rm e
      CCE29231.1 126 KDKAEEQRNAVKAYKKAVRASKVAAESSKNAAQECEKFKRMME 168
                     5555668899*******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1183  (0.0659825); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2666.27
//
Query:       CCE29232.1  [L=1576]
Description: related to ATPases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-56  190.5  22.9    4.5e-56  190.4  15.3    2.8  2  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
    2.2e-23   81.7   0.6    1.3e-21   76.1   0.0    2.4  2  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    1.6e-12   48.1   0.0    5.6e-05   23.5   0.0    3.4  3  Hydrolase        haloacid dehalogenase-like hydrolase
    1.8e-12   47.1   0.0    2.3e-11   43.6   0.0    2.4  2  Cation_ATPase    Cation transport ATPase (P-type)
    2.8e-09   36.8   0.4    8.3e-09   35.2   0.0    1.9  2  E1-E2_ATPase     E1-E2 ATPase
     0.0034   17.2   0.0     0.0073   16.1   0.0    1.4  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
        6.6    6.6  11.4       0.19   11.6   2.3    2.7  3  DctQ             Tripartite ATP-independent periplasmic trans


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.8       1.4   3.5e+03     225     244 ..     538     557 ..     513     606 .. 0.45
   2 !  190.4  15.3   1.8e-59   4.5e-56       2     249 .]    1285    1516 ..    1284    1516 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.4
  PhoLip_ATPase_C 225 lllvvvvallpdllikvlkr 244
                      +++v+++a  + + ++++kr
       CCE29232.1 538 IIIVLMLAAGFTIGYHLWKR 557
                      11122222222222222222 PP

  == domain 2  score: 190.4 bits;  conditional E-value: 1.8e-59
  PhoLip_ATPase_C    2 raSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsael 93  
                       r++DyaiaqFrfL+ LL+vhGrw+y R+ k++l +f+K+++f+l+q+ fq +ng+sg+sl+esw+lt++n lftslpvi+lgif++d+ a +
       CCE29232.1 1285 RIADYAIAQFRFLQPLLFVHGRWNYLRTGKYVLATFWKEILFFLAQAHFQRFNGYSGTSLFESWSLTVFNSLFTSLPVILLGIFEKDLAAGT 1376
                       78****************************************************************************************** PP

  PhoLip_ATPase_C   94 llkyPelYk.lgqknklfnlktfllwileglyqsliifflsylvlddssfsdgktndlqlfgtlvftalvlvvnlkvaletktwtliliili 184 
                       ll++PelY  +g +++ f l ++ +w++ g++ s++i+++++                       f a++ +  + ++le ++ t +++  +
       CCE29232.1 1377 LLAVPELYAsFGPRGRGFGLVQYAGWMVMGVLGSFVIYYFTWGD---------------------FGAALGTQDTSFILELHHKTAVTFTGF 1447
                       *********9999***************************4433.....................346677888889999999********* PP

  PhoLip_ATPase_C  185 lgsillyflflllyssllps....ssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtffps 249 
                       ++s+  +fl++l++s ++p     +     +l+++ +++s+w++lll++++ +++dl+++ ++r+++p+
       CCE29232.1 1448 FVSVTGWFLWCLFLSGMYPLkagkDIVRNAFLHNFGRQLSWWATLLLALAALIVMDLVVQSVRRVYWPT 1516
                       ******************999998555555699**********************************97 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0     5e-25   1.3e-21       9      67 .]     230     288 ..     221     288 .. 0.93
   2 ?    3.3   0.2     0.026        66      17      35 ..    1308    1326 ..    1306    1337 .. 0.86

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 5e-25
  PhoLip_ATPase_N   9 nekkkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqisplspvtti 67 
                      ++kk y+sN I++s+Yt++ F+pk+L+ qF+++ N+YFLv+ ilq++P++s+++++tti
       CCE29232.1 230 RSKKPYVSNFIRSSRYTVYDFVPKQLLFQFSKLGNFYFLVMGILQVTPGLSTVGRWTTI 288
                      44679****************************************************97 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.026
  PhoLip_ATPase_N   17 NkIsTsKYtlltFlpknLf 35  
                       N+ +T KY l+tF    Lf
       CCE29232.1 1308 NYLRTGKYVLATFWKEILF 1326
                       99***********999888 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0047        12       3      24 ..     643     664 ..     641     705 .. 0.77
   2 !   23.5   0.0   2.2e-08   5.6e-05     103     156 ..    1088    1153 ..     979    1201 .. 0.71
   3 !   14.4   0.0   1.3e-05     0.034     168     208 ..    1226    1268 ..    1196    1270 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0047
                 EEEEESBTTTBCHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedviv 24 
                  v+ Dk+GTLt+  ++ ++  v
  CCE29232.1 643 HVFSDKTGTLTENVMRFRKMSV 664
                 6899*******99966655433 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 2.2e-08
                  H..............TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT CS
                  x..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  103 l..............qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG 156 
                  +              + ++ +  +i+d+  + +++ e++ +L++a+i+v++ltgd +eta  + + + 
  CCE29232.1 1088 NrqelveaagerieqNFELAGATAIEDK--LQEGVPETMDKLRRANIKVWMLTGDKRETAINIGHSAR 1153
                  03333333344444467899999999**..*****************************988777666 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.3e-05
                  CESSTTTSHHHH...HHHHHHHTSTGGGEEEEESSHHHHHHHHH CS
                  xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  168 ietvakpspegk...vaaireLqgkpeevamVGDgvnDaaalaa 208 
                   + +  +sp++k   v+air+L ++ + ++++GDg+nD+ +++a
  CCE29232.1 1226 SVICCRASPSQKanlVRAIRRL-IPHSMTLAIGDGANDIGMIQA 1268
                  4444444555550005666666.99***************9987 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   8.8e-15   2.3e-11      19      87 ..     834     918 ..     789     921 .. 0.83
   2 ?    0.1   0.0      0.35     9e+02      12      28 ..    1130    1146 ..    1123    1155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 8.8e-15
  Cation_ATPase  19 llGnktEsALlvlaekl.......gldteelree..........tkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkr 87 
                       +++E AL+++a+++         +t+ l+++          ++ + +i+F+s+rKrmsv+++  p++++++++KGA ++il+r
     CCE29232.1 834 QAASPDELALVEAARDMgwlvtdrAGQTITLQAKdehgvlqvevYQVLDVIEFSSKRKRMSVIVRM-PDGRICVFCKGADNVILSR 918
                    56799************777777733333333336779999999*********************9.8****************98 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.35
  Cation_ATPase   12 sekdevkllGnktEsAL 28  
                     ++ +++ l+G+k E+A+
     CCE29232.1 1130 ANIKVWMLTGDKRETAI 1146
                     67899***********8 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   3.3e-12   8.3e-09      14     160 ..     377     578 ..     368     604 .. 0.82
   2 ?   -3.0   0.1       1.8   4.5e+03     114     137 ..    1478    1501 ..    1476    1511 .. 0.62

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 3.3e-12
                   S-EEEEGGG--TTSEEEEETT-B--SEEEEEE.....E-SEEE-TTTS---S-EE-......................................... CS
  E1-E2_ATPase  14 teeeidakelvpGDivllkagdrvpaDgrive.....gsaevdesaLTGEslpvek......................................... 64 
                    ++e + +++++GDiv l+ +d vpaD+++++     g a +++ aL GE    +k                                         
    CCE29232.1 377 DWKETQWQNVKVGDIVRLRRNDGVPADMVLLHatgpnGVAYLETMALDGETNLKSKqacpllaercttiagmrstqatvvsedpnidlysydgrvtv 473
                   57889999************************88776777********************************************************* PP

                   .......G-TTEE-TT-EEEE.-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT...HHHHH CS
  E1-E2_ATPase  65 .......ekgdmvfsGtvvvs.geakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla...eallr 150
                          + ++ v+ G++  +  ea+++V++ ge+ ++   a+   +a  kk+ +  +++ ++ + +++vl++a+ + +   l+++ ++   ++l+ 
    CCE29232.1 474 adetvplSLNNIVYRGSILRNtAEAVGIVVNSGEECKIRMNANKNVTA--KKPAMHSIINTMILFQIIIVLMLAAGFTIGYHLWKRRVQdnsFYLVP 568
                   *******************99789***********9999777766666..66777777777666644444444444444444444444445666666 PP

                   HHHHHHHHS- CS
  E1-E2_ATPase 151 alallvaaiP 160
                   a +l+ a++P
    CCE29232.1 569 ADGLFSASVP 578
                   6666666666 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
                    HHHHHHHHHHHHHHHHHHHHHHS- CS
  E1-E2_ATPase  114 kldklgkvlvpvvlliallvflia 137 
                    +l+++g++l++ ++l+++l++li 
    CCE29232.1 1478 FLHNFGRQLSWWATLLLALAALIV 1501
                    567788887666655555555543 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.9e-06    0.0073     200     225 ..    1247    1272 ..    1233    1283 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.9e-06
                   T--GGGEEEEESSGGGHHHHHHSSEE CS
  Hydrolase_3  200 nisleeviafGDgeNDieMLeaaglg 225 
                    i++++++a+GDg NDi M++a+ +g
   CCE29232.1 1247 LIPHSMTLAIGDGANDIGMIQASHVG 1272
                   4899****************998665 PP

>> DctQ  Tripartite ATP-independent periplasmic transporters, DctQ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.7   4.4e+03      68      85 ..     538     555 ..     527     579 .. 0.69
   2 ?    0.1   0.3      0.27   6.9e+02      48      98 ..    1378    1431 ..    1372    1451 .. 0.68
   3 ?   11.6   2.3   7.6e-05      0.19      30      77 ..    1455    1502 ..    1440    1523 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.7
        DctQ  68 iadllallfaavliwagw 85 
                 i+ +l+l+++  + + +w
  CCE29232.1 538 IIIVLMLAAGFTIGYHLW 555
                 445556666667777777 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.27
        DctQ   48 irvdllverlpprvrr..lleliadllallfaavliwagw.levaaalfeettp 98  
                  ++v  l+  ++pr+r   l+++++++++ +++ ++i++   +++ aal+++ t+
  CCE29232.1 1378 LAVPELYASFGPRGRGfgLVQYAGWMVMGVLGSFVIYYFTwGDFGAALGTQDTS 1431
                  666677888877777522688888887777777666555546666666665554 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 7.6e-05
        DctQ   30 fvwlvflgaalalrrgshirvdllverlpprvrrlleliadllallfa 77  
                  f+w+ fl++++ l+ g++i   ++++ +++++ +++ l+ +l+al+++
  CCE29232.1 1455 FLWCLFLSGMYPLKAGKDIVRNAFLHNFGRQLSWWATLLLALAALIVM 1502
                  99*************************************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.93u 0.29s 00:00:01.22 Elapsed: 00:00:00.45
# Mc/sec: 10426.54
//
Query:       CCE29233.1  [L=677]
Description: related to heterokaryon incompatibility protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-26   93.8   0.0    2.2e-26   93.0   0.0    1.5  1  HET       Heterokaryon incompatibility protein (HET)
  ------ inclusion threshold ------
       0.05   14.0   0.2       0.42   11.0   0.0    2.4  2  zf-C5HC2  C5HC2 zinc finger


Domain annotation for each model (and alignments):
>> HET  Heterokaryon incompatibility protein (HET)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   2.4e-30   2.2e-26       1     146 []      59     224 ..      59     224 .. 0.76

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 2.4e-30
         HET   1 YeaLSYvWgdskekeeievngklleltenledalqvlrk.lgerylWiDaiCInQdddkekskqvqlmadIYsnAelvivalgseseds.......... 88 
                 Ye+LSY Wgd++ +++i v++  + +t+nl dalq++r+  +   +WiDa+ InQ+d  e+s+q++ m +IY++A+ ++v+lg                
  CCE29233.1  59 YETLSYRWGDESLTKTIVVDDVDMCVTTNLWDALQYFREnPRNMPIWIDALSINQRDVPERSSQLRIMPHIYTRASSTLVWLGRRYVGLfdeasaaasg 157
                 9*************************************9445577***********999************************9986552333344443 PP

         HET  89 .........gllalealralkkekleekeielkksaek..................kkellekeeraieellespwfkRvWvlQE 146
                                  +++++++             +                  + ++ +   +  +++++  ++ RvW+lQE
  CCE29233.1 158 avapeggvdLG------EEVEASQA------------EakieaeaeaeveappakpYPHTEDPLANIKDQIMTDGYWDRVWILQE 224
                 33333322111......22222222............122334444455667777778888888889999**************9 PP

>> zf-C5HC2  C5HC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.7e-05      0.42      19      53 ..      41      73 ..      34      74 .. 0.87
   2 ?   -0.2   0.1      0.15   1.3e+03      21      28 ..     364     371 ..     339     389 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.7e-05
    zf-C5HC2 19 pskvvCleHakelckecppknrvllyRytdeeLea 53
                ++++vC  H+ ++   ++p   +l yR+ de L +
  CCE29233.1 41 HGRIVCHLHTTTFA--QRPRYETLSYRWGDESLTK 73
                589******88888..599************9975 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.15
    zf-C5HC2  21 kvvCleHa 28 
                  vvC +Ha
  CCE29233.1 364 GVVCFHHA 371
                 599****5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4685.37
//
Query:       CCE29234.1  [L=187]
Description: related to cytosolic Cu/Zn superoxide dismutase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-10   39.2   0.0    9.6e-10   38.8   0.0    1.1  1  Sod_Cu    Copper/zinc superoxide dismutase (SODC)


Domain annotation for each model (and alignments):
>> Sod_Cu  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   5.3e-14   9.6e-10       5     123 ..      48     171 ..      44     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 5.3e-14
                 EEEEEEEEEEEECSTTSTCEEEEEEEECSS-.STEEEEEEEESSTTTTTT.TGGG-SB-STT-.CSSTT....TTTCS-TTEEEEEEESTTSE.EEEEE CS
      Sod_Cu   5 kgevsGtvtftqeeskesgsvevtvevkglp.pggkhgfHiHengdcsag.fksagghfnptgkkhgap....ndeerhaGDLgnievdadgt.aklei 96 
                 +g+v+G+v+ +  ++   ++v+++v++k+lp +gg + +H H  +   +g ++ + +h++p+++ +  p    ++e+  +GDL+  + +  ++  ++e 
  CCE29234.1  48 DGNVRGYVRAERGPD--GQGVKFKVHFKNLPkQGGPFMYHLHVMPVPADGnCTHTLAHLDPYQRGETPPcdasKPETCQVGDLSGKYGHVTQDpFRAEY 144
                 579********8774..457***********77779*********987767**********998888665333444888*****443333333334443 PP

                 EEESC.BCSTTT..BCTTEEEEEESS--- CS
      Sod_Cu  97 ttdklvslkgen..silgralvihagaDd 123
                   d + sl++++   + +r++v h  aD+
  CCE29234.1 145 V-DPYSSLEEGTpgFFGNRSIVFH-FADK 171
                 3.*******988844669******.7775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1440.89
//
Query:       CCE29235.1  [L=85]
Description: uncharacterized protein CPUR_02928 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0049   17.0   0.0     0.0059   16.7   0.0    1.1  1  NAD2          Novel AID APOBEC clade 2
  ------ inclusion threshold ------
      0.025   14.7   0.0      0.031   14.4   0.0    1.1  1  SNAD4         Secreted Novel AID/APOBEC-like Deaminase 4
      0.031   14.5   0.0      0.037   14.3   0.0    1.1  1  APOBEC1       APOBEC1
      0.037   14.0   0.0      0.041   13.8   0.0    1.1  1  APOBEC4_like  APOBEC4-like -AID/APOBEC-deaminase
      0.048   13.7   0.0      0.058   13.5   0.0    1.1  1  NAD1          Novel AID APOBEC clade 1


Domain annotation for each model (and alignments):
>> NAD2  Novel AID APOBEC clade 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.7e-06    0.0059      90     141 ..      23      75 ..      16      80 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.7e-06
        NAD2  90 aaevaeflaekknvtLtifaaRlYyfwepdyqeaLrsLr.qagarvkimdyee 141
                  +++++f+  ++n++Lt ++ R Y+    +y+++L + +   g +++ m +ee
  CCE29235.1  23 CKSMKKFKVGHPNMHLTEYVCRYYFRDTATYNDGLDECVtTPGNTIDEMLWEE 75 
                 36899*******************999999*****875415678888887765 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   8.7e-06     0.031      57     104 ..      23      72 ..      17      80 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.7e-06
       SNAD4  57 aekiaeflaehpnvtLeifaarLyf.weeenregLrsLaka.gvkvkimk 104
                 ++++ +f   hpn++L+ ++ r yf +  ++++gL +  ++ g +++ m 
  CCE29235.1  23 CKSMKKFKVGHPNMHLTEYVCRYYFrDTATYNDGLDECVTTpGNTIDEML 72 
                 57899*******************736667999**987776677876554 PP

>> APOBEC1  APOBEC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     1e-05     0.037      51      93 ..      19      62 ..       8      71 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1e-05
     APOBEC1 51 gkc.skaileflsqhpnvtlviyvaklfkhldernrqGlrdlak 93
                 +c +k +++f   hpn+ l+ yv++ +       ++Gl + ++
  CCE29235.1 19 FRCnCKSMKKFKVGHPNMHLTEYVCRYYFRDTATYNDGLDECVT 62
                56658999******************998888888899987654 PP

>> APOBEC4_like  APOBEC4-like -AID/APOBEC-deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.1e-05     0.041      67     125 ..      19      79 ..       9      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
  APOBEC4_like  67 aecs.krlleflskkpnvkleiyvaklflhvdddnreglrkLk.qngveiqvmsvkeycyc 125
                    +c+ k +  f   +pn+ l+ yv +++  +     +gl + + + g +i  m  +e c +
    CCE29235.1  19 FRCNcKSMKKFKVGHPNMHLTEYVCRYYFRDTATYNDGLDECVtTPGNTIDEMLWEEDCKH 79 
                   56662447789999**************************999899****99999988866 PP

>> NAD1  Novel AID APOBEC clade 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.6e-05     0.058      84     133 ..      20      71 ..      17      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
        NAD1  84 eC.asklaeflkerpnvtLrIfvarlYeteeeenqegLrsLasag.vklsim 133
                 +C ++++ +f   +pn++L+ +v r Y+ +  ++++gL +    +  +++ m
  CCE29235.1  20 RCnCKSMKKFKVGHPNMHLTEYVCRYYFRDTATYNDGLDECVTTPgNTIDEM 71 
                 7999**************************999*****88776433666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 634.71
//
Query:       CCE29236.1  [L=375]
Description: uncharacterized protein CPUR_02929 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-14   53.4   0.0    3.2e-14   52.8   0.0    1.4  1  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
    7.6e-07   28.9   0.0    1.1e-06   28.4   0.0    1.2  1  RVT_1        Reverse transcriptase (RNA-dependent DNA polymer
    0.00085   19.6   0.0     0.0013   19.0   0.0    1.3  1  RT_RNaseH    RNase H-like domain found in reverse transcripta


Domain annotation for each model (and alignments):
>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   5.3e-18   3.2e-14       1      62 [.     313     374 ..     313     375 .] 0.98

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 5.3e-18
  RT_RNaseH_2   1 WteeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaS 62 
                  W e++ +afe+lk+a++s pvLa  dp+++++ e D+S +++g++Lsq +d+g ++p+a+ S
   CCE29236.1 313 WPEACADAFERLKSAFISYPVLAQWDPERDTVAEADSSGEALGGCLSQYSDKGVLHPVAYHS 374
                  99*************************************************988******99 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.8e-10   1.1e-06     159     221 ..     190     248 ..     171     249 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.8e-10
                 ...TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEE CS
       RVT_1 159 kgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlftvkseevkyLGvt 221
                  g + ++Y  D+li+s + k+++ + +++v ++l+++glk+  eK++        +evkyLG+ 
  CCE29236.1 190 LGDFATAYLGDVLIYSGGsKKDHLRKVREVLRRLRDAGLKLDIEKCSSG-----VKEVKYLGFM 248
                 5778899***********8899***************************.....8*******96 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.2e-07    0.0013       1      37 [.     338     374 ..     338     375 .] 0.96

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.2e-07
                 -TTS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEE CS
   RT_RNaseH   1 dpskpfiletDAsddgigavLsqreedgeerpiafaS 37 
                 dp++ ++ e D+s +++g++Lsq  ++g  +p+a+ S
  CCE29236.1 338 DPERDTVAEADSSGEALGGCLSQYSDKGVLHPVAYHS 374
                 89999******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2730.33
//
Query:       CCE29237.1  [L=130]
Description: uncharacterized protein CPUR_02930 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 969.09
//
Query:       CCE29238.1  [L=231]
Description: uncharacterized protein CPUR_02931 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1791.02
//
Query:       CCE29239.1  [L=442]
Description: uncharacterized protein CPUR_02932 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.1e-24   83.4   0.0    1.5e-23   82.7   0.0    1.3  1  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
    3.4e-14   53.0   0.0    6.2e-14   52.2   0.0    1.4  1  RT_RNaseH    RNase H-like domain found in reverse transcripta
  ------ inclusion threshold ------
      0.015   14.8   0.0      0.023   14.2   0.0    1.2  1  RVT_1        Reverse transcriptase (RNA-dependent DNA polymer


Domain annotation for each model (and alignments):
>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   2.6e-27   1.5e-23       1      84 [.     124     207 ..     124     211 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 2.6e-27
  RT_RNaseH_2   1 WteeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAivw 84 
                  W++++ +afe+lk+a++s pvLa  dpd ++++e D+S  +ig++Lsq d  g ++p+a+ S +l++ +rny++++kel++i +
   CCE29239.1 124 WSDACSNAFERLKAAFVSYPVLAQWDPDGQTVVEADSSGDAIGGCLSQYDARGILHPVAYHSARLTAPQRNYTIHDKELFSIKY 207
                  ***************************************************888***************************986 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0     1e-17   6.2e-14       1      59 [.     149     207 ..     149     212 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1e-17
                 -TTS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHH CS
   RT_RNaseH   1 dpskpfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAiva 59 
                 dp+ ++++e D+s d+ig++Lsq +++g  +p+a+ S +l++ +rny++++kel++i +
  CCE29239.1 149 DPDGQTVVEADSSGDAIGGCLSQYDARGILHPVAYHSARLTAPQRNYTIHDKELFSIKY 207
                 7999****************************************************976 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.9e-06     0.023     174     222 .]      17      60 ..      15      60 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.9e-06
                 ESSHHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS
       RVT_1 174 skskeelqelleaveewlkesglkinpeKtklvlftvkseevkyLGvtl 222
                 ++sk+++ +  ++v ++l+ +g+ +  +K+ +       +evkyLG+++
  CCE29239.1  17 FDSKDDHVRKTREVLRRLQAAGIYLDIKKCNFG-----VTEVKYLGFIV 60 
                 578999***************************.....8*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 3732.76
//
Query:       CCE29240.1  [L=152]
Description: uncharacterized protein CPUR_02933 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0059   17.0   2.7     0.0073   16.7   2.7    1.2  1  DUF4510   Domain of unknown function (DUF4510)
  ------ inclusion threshold ------
      0.068   13.0   2.0       0.09   12.6   2.0    1.1  1  SKA1      Spindle and kinetochore-associated protein 1


Domain annotation for each model (and alignments):
>> DUF4510  Domain of unknown function (DUF4510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.7   8.1e-07    0.0073      14      80 ..       6      70 ..       2     102 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.1e-07
     DUF4510 14 ipesGagelelvareLqalqeeLqeaaeaRRaawearv.gglgqGpewsaarralqeaVaqeLaaLql 80
                 p+   +e+elv reLq+l++++q+   +  + ++a+v  ++++G+     +++ qea ++   aL +
  CCE29240.1  6 QPDVVLSEAELVFRELQTLRQQVQAFEAQQQQTQQANVaAQQEHGTLL---QQQQQEALQRSADALPQ 70
                555567899***************998888888888883445666654...55556666666666655 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.0     1e-05      0.09      16      82 ..       5      73 ..       2      84 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1e-05
                ........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXX CS
        SKA1 16 qdpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqek..lqhlkenlpshlp 82
                ++p++  +  + +  e+++l++++++++++ q+ ++a+  +++e    l+qq++  lq  ++ lp+ + 
  CCE29240.1  5 MQPDVVLSEAELVFRELQTLRQQVQAFEAQQQQTQQANVAAQQEHGTLLQQQQQeaLQRSADALPQPFT 73
                667777777788889*****************9999999999999888887766689999999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2433  (0.135702); expected 358.6 (0.02)
Passed bias filter:                      927  (0.0517039); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1147.65
//
Query:       CCE29241.1  [L=1210]
Description: uncharacterized protein CPUR_02934 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-41  141.4   0.0    2.6e-41  141.4   0.0    4.9  4  Rxt3           Histone deacetylation protein Rxt3
    0.00013   21.0  39.0    0.00013   21.0  39.0    2.4  2  Dapper         Dapper
    0.00024   21.1   0.0      0.011   15.8   0.0    2.6  2  LCCL           LCCL domain


Domain annotation for each model (and alignments):
>> Rxt3  Histone deacetylation protein Rxt3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -32.8  45.8         3   1.8e+04      49      49 ..     213     213 ..     142     292 .. 0.57
   2 ?   -4.3   0.2         3   1.8e+04      65      99 ..     551     585 ..     543     587 .. 0.69
   3 ?   -3.3   2.5       2.4   1.5e+04      52      52 ..     808     808 ..     744     857 .. 0.58
   4 !  141.4   0.0   4.3e-45   2.6e-41       1     127 []     918    1049 ..     918    1049 .. 0.94

  Alignments for each domain:
  == domain 1  score: -32.8 bits;  conditional E-value: 3
        Rxt3  49 w 49 
                 +
  CCE29241.1 213 Y 213
                 0 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 3
        Rxt3  65 akkkskeekskdeseaekklekkkkrtpvnvpekk 99 
                 a+ + + +++ d+++a+ ++++++++ p+ +p+++
  CCE29241.1 551 AAPAPTPQQQYDADRARIEQTHPHPHAPPPPPPHH 585
                 44555667777777778888888888888777665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.4
        Rxt3  52 d 52 
                 +
  CCE29241.1 808 Q 808
                 1 PP

  == domain 4  score: 141.4 bits;  conditional E-value: 4.3e-45
        Rxt3    1 tvkvprerlkeskreeivarrelWGtdvYtdDSDvvaaliHsGfirgewaedvdvslldl.....akkkakkkskeekskdeseaekklekkkkrtp 92  
                  tvkvp ++l++ +reei+ar  +WGtdv+tdDSDvvaa+iH G+irgew++ vd ++ldl      k++ak++++ ++++ + e+e + ++++ ++p
  CCE29241.1  918 TVKVPHVHLSTVAREEITARSYVWGTDVHTDDSDVVAACIHGGWIRGEWTDYVDPDMLDLdkdadGKRAAKSQNEMTEQAPSYESEGAITTPPLSGP 1014
                  8***********************************************************8887766666667777788888889999999****** PP

        Rxt3   93 vnvpekkDlhvtlliLpkLekYastvrygikSRew 127 
                  +++p+ +Dlhvt+liLp+L++Y+s++r+gi+SRe+
  CCE29241.1 1015 MSIPPGRDLHVTVLILPRLTRYTSCTRFGISSREF 1049
                  *********************************97 PP

>> Dapper  Dapper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0  39.0   2.2e-08   0.00013     339     520 ..     149     310 ..     127     485 .. 0.58
   2 ?   -0.9   8.7     0.091   5.4e+02     604     679 ..     765     846 ..     722     873 .. 0.44

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.2e-08
      Dapper 339 etdpsksil.rqkslclrqpsgqksqsqtsdskeskqklllssgresageastssplkqlskeskaeqqeskavlvsalekeepasskeeeskelnkss 436
                 + +++++ + +q++++ +q ++q++q+q+++++++ q+  +++++ ++++ ++++p+kq+++++ ++qq  ++    ++ ++++ +++ +++++ ++++
  CCE29241.1 149 QLQQQQQLQqQQQQQHQQQQQHQQQQHQQQQQQHQPQQQHPQQQHPQQQHPQQQHPQKQHPQQQYQQQQHPQQ----QQLQQQQLQQQHLQQQHQQQQQ 243
                 1111111110111111111111122222222222222222222222222233333333322222111111111....1112222222333333333333 PP

      Dapper 437 lakkasqeeelsevakkseeksspkpesspkeskkeeersaleqssegsssqsleessskasselvhaqfvpaqsqrvklrkge 520
                  +++++q++++++++++++++++++ +++p+++++++++++l+                 +++ +   +f+p  + + +++ ++
  CCE29241.1 244 HQQQQQQQQQQQQQHQQHQQHQQQHQQQQPQQHHHHHHQQSLQ-----------------GQPSISGPNFAPPMQVSPRMHSAS 310
                 3333333333333333333333444444444444433333333.................334444445555444444444444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.091
      Dapper 604 svakpeshgasaqallsleaahgr.........vakpkkkrkdyrrwkssveisaeealaslgkerpkarragll.rrasarsrre 679
                 + ++p+sh+++++++ ++++ h +         +a++k  +    +  ss+e   + +     +++++ ++a+++ ++++a++   
  CCE29241.1 765 ANKRPKSHQHHHHHHHHHHH-HAQdaapsppagAATSKGTKGA-TQTDSSAEKAHAHHH--HHHHHHHGQKASQPaQNVQAKPAAA 846
                 22222222211111111111.1111222232223333333333.455566654444444..4466666666666666666665333 PP

>> LCCL  LCCL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.8e-06     0.011      32      59 ..     936     963 ..     912     997 .. 0.86
   2 ?    2.0   0.0     0.037   2.2e+02      65      90 ..    1025    1050 ..    1020    1055 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.8e-06
                 SS--EESSSSEETTSBHHHHHHHHTSS- CS
        LCCL  32 ekasvvGskvYssdSsICkAAihaGvid 59 
                 ++++v+G++v+++dS + +A ih G+i+
  CCE29241.1 936 ARSYVWGTDVHTDDSDVVAACIHGGWIR 963
                 4589**********************94 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.037
                  EEEEEE--B-S---EE-SS-EEE--S CS
        LCCL   65 vvvtiveelkeykgskqngieSesls 90  
                  v+v i  +l++y++ +++gi+S ++ 
  CCE29241.1 1025 VTVLILPRLTRYTSCTRFGISSREFG 1050
                  67889999**************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4930  (0.274974); expected 358.6 (0.02)
Passed bias filter:                     1198  (0.0668191); expected 358.6 (0.02)
Passed Vit filter:                       952  (0.0530983); expected 17.9 (0.001)
Passed Fwd filter:                       260  (0.0145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 3.78u 0.36s 00:00:04.13 Elapsed: 00:00:00.73
# Mc/sec: 4989.74
//
Query:       CCE29242.1  [L=129]
Description: uncharacterized protein CPUR_02935 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-15   57.3   5.2    1.6e-15   57.3   5.2    1.8  2  DUF1674   Protein of unknown function (DUF1674)


Domain annotation for each model (and alignments):
>> DUF1674  Protein of unknown function (DUF1674)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.39   7.1e+03       9      18 ..      33      42 ..      28      48 .. 0.69
   2 !   57.3   5.2   8.9e-20   1.6e-15      13      50 .]      77     129 .]      60     129 .] 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.39
     DUF1674  9 aaepapefeg 18
                 a +++efe+
  CCE29242.1 33 PADQQAEFER 42
                5566678876 PP

  == domain 2  score: 57.3 bits;  conditional E-value: 8.9e-20
     DUF1674  13 a.............pefegdvnpktgEigGpkgpEPtR...ygDWeykGrvsDF 50 
                 +             pef gd+np tgE+gGp ++EP+R   + DW+y+Grv+DF
  CCE29242.1  77 EetalptgvrrgapPEFTGDTNPRTGEVGGP-KNEPLRwggEADWSYNGRVTDF 129
                 244455566666669****************.******97777*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 996.18
//
Query:       CCE29243.1  [L=467]
Description: probable argininosuccinate lyase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-86  289.9   0.0    3.5e-86  289.4   0.0    1.2  1  Lyase_1   Lyase
    1.1e-24   86.9   0.1      3e-24   85.6   0.1    1.8  1  ASL_C2    Argininosuccinate lyase C-terminal


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.4   0.0   3.9e-90   3.5e-86       1     312 []      13     309 ..      13     309 .. 0.98

  Alignments for each domain:
  == domain 1  score: 289.4 bits;  conditional E-value: 3.9e-90
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHB.SSSSSHHHHHHHHHHHHHHHHTTHS CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlk.viqegsgtavnmnlnevigellgek 98 
                 grf+   d lm++f+e++++++ l+++di++++  ++a+ k+n++++ee+ +i ++l++v ee++++ ++v++ +++e+++t ++++l e+ig      
  CCE29243.1  13 GRFSSGLDDLMMQFNESLSFDKCLCHADIQGSITFARALQKLNIITEEELTQITSGLQQVGEEWDKG-TIVINpKSDEDIHTINERRLGEIIG------ 104
                 7999999************************************************************.777762689****************...... PP

                 SGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE CS
     Lyase_1  99 vepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvel 197
                  ++++k+htg+S+n+q+  ++rl+++++l++ + + l++   ++++kak    v+++G+Thlq+A+Pv+++++l ++a+ l  d++rl  +++r+   +
  CCE29243.1 105 TQVAGKLHTGRSRNEQIGVDMRLWAREQLKD-IASSLKDALAVFTAKAKVTLPVLMPGYTHLQRAQPVRFSHWLLSHATFLLGDLQRLSGVADRVASCP 202
                 89***************************55.******************************************************************* PP

                 TTTTTTTSSTTTSCCTHHHHHHHHHHHHHCSTEESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEB CS
     Lyase_1 198 lgggtavgtglnadpefaelvakelakvtglpvkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvN 296
                 lg g+++g+++++d+e   ++ak l+    +p++ pns+ av+drD+vv++l++++ll+++Ls+++eDl+l+s+ e+g+ ++ +a+s+ GSS+MP+K+N
  CCE29243.1 203 LGVGALAGNPFGIDRE---FMAKDLG----FPTIHPNSLAAVADRDFVVDILQWASLLMVHLSRLSEDLILFSTAEFGFCQVADAYST-GSSLMPQKKN 293
                 ****************...*******....4559******************************************************.********** PP

                 THHHHHHHHHHHHHHH CS
     Lyase_1 297 PvqlElltgvagrvvG 312
                 P++lEl++g+agrv+G
  CCE29243.1 294 PDSLELIRGKAGRVMG 309
                 ***************9 PP

>> ASL_C2  Argininosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.1   3.3e-28     3e-24       2      69 .]     372     439 ..     372     439 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 3.3e-28
                 TTHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTT--GGG--HHHHHHH-TT--GGGGGGSSHHHHTT CS
      ASL_C2   2 stATdlADyLvrkGlpFReAHeivgravrlaeekgkeleeltleelkeisplleedveeaLdpeasVa 69 
                 ++ATd+ADyLv kG+pFRe+H+i+g++vr+aee+g++++el+le lkei pl+e+d+++++d+e+sV+
  CCE29243.1 372 MLATDVADYLVLKGVPFRETHHIAGSVVRKAEEQGTSISELSLEHLKEITPLFEADIKDVFDFERSVE 439
                 68****************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3602.91
//
Query:       CCE29244.1  [L=1358]
Description: related to phosphoribosylformylglycinamidine synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-99  331.5   0.0    4.3e-99  330.8   0.0    1.3  1  GATase_5        CobB/CobQ-like glutamine amidotransferase dom
      8e-34  117.0   0.5    1.5e-24   86.9   0.0    2.6  2  AIRS_C          AIR synthase related protein, C-terminal doma
    1.2e-25   89.8   0.0    2.1e-25   89.0   0.0    1.4  1  FGAR-AT_N       Formylglycinamide ribonucleotide amidotransfe
    3.9e-23   81.7   0.1    9.2e-23   80.5   0.1    1.7  1  FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransfe
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.25   11.5   0.0    1.6  1  DUF3378         Domain of unknown function (DUF3378)


Domain annotation for each model (and alignments):
>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.8   0.0  1.2e-102   4.3e-99       2     260 .]    1097    1357 ..    1096    1357 .. 0.96

  Alignments for each domain:
  == domain 1  score: 330.8 bits;  conditional E-value: 1.2e-102
    GATase_5    2 pkvailreeGvngeyemaaafekaGfeavdvhmsdllegrvslddfqilalpGGfsygDelgsgkgwakslllneklrealekflnredtlaLGiCn 98  
                  p+vailre+Gvng++e+a af++aGfe vdvhm+d+l gr sl++f +la+pGGfsygD+lg+g+gwa+s+l+++++r+++e+f++r+dt+aLG+Cn
  CCE29244.1 1097 PRVAILREQGVNGHAELAFAFRAAGFEPVDVHMTDVLGGR-SLAEFTGLAAPGGFSYGDVLGAGQGWARSVLMHSDTRREFEQFFKRPDTFALGVCN 1192
                  9***********************************9988.9******************************************************* PP

    GATase_5   99 GfqlLvklg.lvpggeieeaeksptltrNksgrfesrlvsv..vvsekspsvflkgmeglslp..vahGeGrfvfkseevlkeleangqvalrYvde 190 
                  G+q+L++++ l+pg     +e++pt+++N+s +fe r+++v    +ek psvf++gm+g+slp  v+hGeGr++f+s++ l+el ++g + +rYvd+
  CCE29244.1 1193 GCQFLTRIQqLIPG-----TEHWPTFVHNESAQFEGRFSMVtiTEDEKRPSVFFHGMNGSSLPivVSHGEGRAEFPSPNSLHELTSQGMISMRYVDN 1284
                  **************.....*******************99964457789**************999******************************* PP

    GATase_5  191 egkpteeyplNPNgSpegiagitspdGRvlalmpHpervveavqksiipeeeeee...vspwlrlFenavkyv 260 
                  + ++t +yp+NPNgSp g+ag+ s+dGR++a+mpHper++ a  +s++p++  ee   ++pw+r+F++a+++v
  CCE29244.1 1285 RLRVTDQYPYNPNGSPGGVAGVSSKDGRFVAMMPHPERTIAAGVNSYMPRQAAEEwgdFGPWVRIFKSARRWV 1357
                  *************************************************965543345**************7 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.0   4.3e-28   1.5e-24       2     149 ..     447     599 ..     446     603 .. 0.91
   2 !   27.6   0.2   7.2e-10   2.6e-06      14     131 ..     882     992 ..     865    1012 .. 0.78

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 4.3e-28
                 TTEEEEEEET....SSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHH..HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTH CS
      AIRS_C   2 pGdvliltgs....lGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaal..kglvkaahDvTgGGLlgalaemapasgvgaeidldkv 94 
                 +G  +i++g+    +Glgg + s+ + + ++++ld ++vq+g++++e++ + v   +  l  + ++  +hDv++GGL++al+e+++++g g +++l +v
  CCE29244.1 447 EGAHVIVLGGpamlIGLGGGAASSNASGETSADLDFDSVQRGNPEMERRAQMVINTCVSLgeETPIAMIHDVGAGGLSNALPELVKDAGYGGKFELRQV 545
                 56666666666**********7776666666666655************************************************************** PP

                 HHHHHHHHHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEESS CS
      AIRS_C  95 pifdelesplemllsensGrllvavppeeadavlaileeeglpeaavIGevtake 149
                 +  d  +spl++++ e+++r+++++ pe+ +++++i+++e++  ++ +G v+ ++
  CCE29244.1 546 ESADRSMSPLQIWCNESQERYVLLINPENMNRFTSICRRERC-GFSNVGNVVTRD 599
                 ******************************************.6*******9886 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 7.2e-10
                 CTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHHHHHHHHHHHHHCSTT CS
      AIRS_C  14 lggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpifdelesplemllsens 112
                 +gg++++ + + l +e+ d     + +  l     ++   l  + g v a hD ++GGL+ ++aem++a+++g+ + +d +     +++ +e+l+ e+ 
  CCE29244.1 882 MGGSALAQSLGALGDEAPD-----MKNFGLITDYFDALSQLHKS-GVVLAYHDRSDGGLITTIAEMMFAGRCGVDMMVDGISKSGSAGDMIEALFNEEL 974
                 6677777777777777766.....67777777777888888886.**********************************88888888788899998888 PP

                 TEEEEEEEHGGHHHHHHHH CS
      AIRS_C 113 Grllvavppeeadavlail 131
                 G + + v++ ++  +++ +
  CCE29244.1 975 GAV-FQVKASDEMNFKRCF 992
                 844.555555555555544 PP

>> FGAR-AT_N  Formylglycinamide ribonucleotide amidotransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   5.8e-29   2.1e-25       1     115 []      38     155 ..      38     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 5.8e-29
   FGAR-AT_N   1 eyvhfveleeelseeeravleqlLeygdk....leeeeeegelllVvPRlGtiSpWsSkAtdIahncgle.kvkRiErgiayvlel.kelseeelaala 93 
                 ++v++v+l+++ +++  +++++lL+  d+    ++e+++++ +++V+PR   +SpWsS+At+Iah+cgl+ kv+R+Erg   v+e+ +e +  + a+++
  CCE29244.1  38 QWVYYVDLKSS-DRAVIDNVKTLLQDIDSepllASESTTSSITVYVTPRY--LSPWSSQATNIAHVCGLAgKVNRVERGRLLVVEFeDEYEVGQDATFR 133
                 69*****9888.8888999999999888767655666677779******7..9*********************************88999******** PP

   FGAR-AT_N  94 alLhDrmtesvleeledaealF 115
                 ++LhDrmte++  e+++++ +F
  CCE29244.1 134 DILHDRMTETFAFEKPQLDVMF 155
                 *****************99998 PP

>> FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransferase linker domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.1   2.6e-26   9.2e-23       1      50 []     179     228 ..     179     228 .. 0.99

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 2.6e-26
  FGAR-AT_linker   1 LeeankelglaLsdeEidylqeafeklgrnPtdvElemfaqvwSEHCrHK 50 
                     L+++nke+gl+L+d+E++yl+++f+klgr P dvEl+mfaqv+SEHCrHK
      CCE29244.1 179 LQAYNKEKGLSLDDSEMQYLVDVFKKLGRSPHDVELFMFAQVNSEHCRHK 228
                     799**********************************************9 PP

>> DUF3378  Domain of unknown function (DUF3378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     7e-05      0.25      35      64 ..     255     284 ..     252     293 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7e-05
     DUF3378  35 kkndttItaYtSgKVlFQGknaeaeAskwg 64 
                 k++d t++aY  +  ++QG++a+  A  ++
  CCE29244.1 255 KTPDFTVSAYSDNAAVLQGESANFWAPDFT 284
                 899*******************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.25s 00:00:01.05 Elapsed: 00:00:00.41
# Mc/sec: 9914.10
//
Query:       CCE29245.1  [L=417]
Description: related to cell division protein CDC50 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-97  326.2   0.0    2.3e-97  325.9   0.0    1.1  1  CDC50     LEM3 (ligand-effect modulator 3) family / CDC50 fam


Domain annotation for each model (and alignments):
>> CDC50  LEM3 (ligand-effect modulator 3) family / CDC50 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.9   0.0  1.3e-101   2.3e-97       1     280 []      63     383 ..      63     383 .. 0.91

  Alignments for each domain:
  == domain 1  score: 325.9 bits;  conditional E-value: 1.3e-101
       CDC50   1 llvasksvkeleidYtsecataaesek.......................................easkekktCtvqftvpedlkapvyvyYeLtnfy 60 
                 ll+as++v+e+++dYt +c ++  + +                                         +++ ++C +qft pe++ apv++yY+Ltnfy
  CCE29245.1  63 LLYASSQVQEIKLDYT-RCLQDGGDFTssefvpmpdnavqtafknnngsvnakwaaeknvnitlynGVETTGDRCYLQFTTPERMGAPVLLYYHLTNFY 160
                 689*************.999877776689999999999999999999******************98999999************************** PP

       CDC50  61 QnhrryvkSrddsqlkgkaks.s.lksssssdCepletakekkekkkiiyPCGliAnslFNDtf....slveessskltkvnltkkgIawksdkekkfk 153
                 Qnhrry++S+d sql+g+a+s   ++  +s +C+pl  a+  + ++k++yPCGliAns+FND++    +l+   s+  ++ n+tkkgIaw+sdk ++++
  CCE29245.1 161 QNHRRYAESCDLSQLRGDARSyGdIT--GS-KCTPLYGADS-NGTNKPYYPCGLIANSMFNDSIgdpmWLSAPGSKDPKPYNMTKKGIAWDSDK-DLYG 254
                 *******************7655453..45.6****65544.5556******************887766666556688999************.9*** PP

       CDC50 154 nktkyealeevvkPpnWakk.pe....eteipelkenedfivWmrtAalptFrKlyrrindeedLkagtyevdiennfpvksFkGtKsivlsttswlGg 247
                 + t+y++ ++v++PpnWak+ pe    +++ p+++e+e+f+vWmrtA+lptF+Kly+r nd++ ++agty+++i++ fp+++++GtKs++++t++++Gg
  CCE29245.1 255 K-TSYKP-SDVLPPPNWAKAyPEnyteQNPPPNIREWEAFHVWMRTAGLPTFSKLYKR-NDDTPMDAGTYQIAIDDFFPTEKYEGTKSVLITTRTVMGG 350
                 6.88998.*********9988335677999****************************.888************************************* PP

       CDC50 248 knpflgiaYlvvGgiclvlaivflvthlikprk 280
                 +n+flgiaY++vGg+c++l+++f++thli+prk
  CCE29245.1 351 RNNFLGIAYIAVGGVCILLGAIFTATHLIRPRK 383
                 *******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3491.13
//
Query:       CCE29246.1  [L=177]
Description: uncharacterized protein CPUR_02939 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1430.96
//
Query:       CCE29247.1  [L=134]
Description: related to transthyretin-like protein pucM [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-31  109.6   0.0    1.6e-31  109.2   0.0    1.2  1  Transthyretin  HIUase/Transthyretin family
  ------ inclusion threshold ------
      0.099   13.2   0.0       0.13   12.8   0.0    1.1  1  Pyocin_S       S-type Pyocin


Domain annotation for each model (and alignments):
>> Transthyretin  HIUase/Transthyretin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.0   1.8e-35   1.6e-31       1     110 []       7     133 ..       7     133 .. 0.89

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 1.8e-35
                    EEEEEEETTTTEE-TS-EEEEEEECTTSSEEEEEEEEE--TTSCESSSSEE.....................GCGB-SEEEEEEEEHHHHHHHTTS CS
  Transthyretin   1 itthvLdttaGkpaagvevelekleeseeeaellaesttdadGrvkellae.....................keeleagtyklrfeteeYfekegt 75 
                    it+hvLdtt+G+pa+ ++v+l   +     +   +e++td+dGr++++ ++                      + ++a t+ l f+t+ Yf  e  
     CCE29247.1   7 ITCHVLDTTTGRPATAIRVRLRGGTIPG--QVFNFETSTDQDGRISTWPPSsspasssgsnttqtlgdvlgqPDGEDASTWILCFDTAGYFGME-- 98 
                    8*********************977766..5778999*************99999999887777777766654555556*************94.. PP

                    ..SESCEEEEEEESTTSEEEEEEEEETTEEEEE-B CS
  Transthyretin  76 esffpevevvfevkeeehyhvPlllspfgYstYrG 110
                    ++ffpev v+f+vk++e+yhvPlll+pf+Y+tYrG
     CCE29247.1  99 NTFFPEVVVSFRVKRGERYHVPLLLGPFSYTTYRG 133
                    56********************************9 PP

>> Pyocin_S  S-type Pyocin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.4e-05      0.13      28      86 ..       8      69 ..       3      89 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
                ECCCEEC....CEEEEEEEESCCSSSTT-EC............CS-TTC--..EECCEESS- CS
    Pyocin_S 28 kvrvvktggksvpdrVpVrkaqldketgsye.ftadgspgvtilwtpaaap..lssssttsh 86
                +++v+ t ++   ++++Vr    +  ++++   t+++++g++ +w p+++p   s+s+tt++
  CCE29247.1  8 TCHVLDTTTGRPATAIRVRLRGGTIPGQVFNfETSTDQDGRISTWPPSSSPasSSGSNTTQT 69
                5788889888888889999988888888888558889999999********54444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 991.70
//
Query:       CCE29248.1  [L=341]
Description: probable arsenite translocating ATPase (ASNA1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     6e-111  370.5   0.0   6.8e-111  370.3   0.0    1.0  1  ArsA_ATPase  Anion-transporting ATPase
    2.1e-12   47.3   0.1    8.7e-12   45.3   0.0    2.0  2  AAA_31       AAA domain
    2.8e-12   46.8   0.0    4.7e-12   46.1   0.0    1.5  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    5.9e-06   25.9   0.0    1.5e-05   24.6   0.0    1.7  2  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
    3.2e-05   23.5   0.4    0.00021   20.8   0.1    2.1  2  ParA         NUBPL iron-transfer P-loop NTPase
    0.00011   21.8   0.0    0.00025   20.6   0.0    1.5  1  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
    0.00017   21.3   0.0     0.0019   17.9   0.0    2.2  2  SRP54        SRP54-type protein, GTPase domain
     0.0094   16.3   0.0      0.022   15.1   0.0    1.5  2  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.024   13.8   0.0       0.04   13.1   0.0    1.3  1  NB-ARC       NB-ARC domain
      0.031   13.8   0.0      0.064   12.8   0.0    1.6  2  AAA_25       AAA domain
       0.11   11.9   0.0       0.26   10.7   0.0    1.6  1  PhoH         PhoH-like protein
       0.15   12.7   0.0       0.53   10.8   0.0    1.9  2  AAA_18       AAA domain


Domain annotation for each model (and alignments):
>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.3   0.0  4.6e-114  6.8e-111       2     304 ..      26     334 ..      25     335 .. 0.93

  Alignments for each domain:
  == domain 1  score: 370.3 bits;  conditional E-value: 4.6e-114
                  EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-STTTHHHHHHTS--BSS-EEET..SSEEEEE--HHHHHHH..HHCCHHGGGSCCHHHHHHHH CS
  ArsA_ATPase   2 kvilvgGKGGVGKttvsaatavklsekgkkvllistDPAhslsDsfdqklgkeptkvk..eNLsavEidpevelee..akqevqkeeeallgleeled 95 
                  ++++vgGKGGVGKtt s+++a++l++ +++vllistDPAh+lsD+f+qk+gke++ v+  +NLsa+Eidp+  ++   a q++ + ++a  g  +l +
   CCE29248.1  26 RWVFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLISTDPAHNLSDAFSQKFGKEARLVDgfDNLSAMEIDPNGSMQDllAGQNTEEDMNAAGG-GGLGG 122
                  9**********************************************************************666651145566666666555.99*** PP

                  HHHHHHTSSTTHHHHHHHHHHHHHHHCSSSSEEEEESBSCCHTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHCH..HHHHHHHHHHHHHHH CS
  ArsA_ATPase  96 vlaeelaslPGideilsfeellkyvkeeeydvvvlDtaPTGhtlrllslpevleklleklvklkeklsplakqlvkllglg..gvsieealeeleetk 191
                  ++++ + ++PGide++sf+e+lk vk+  y+++v+DtaPTGhtlr+l++p+vlek l k+ +l ++ +pl++ + + +g+   g+++++++++le+  
   CCE29248.1 123 MMQDLAFAIPGIDEAMSFAEVLKQVKSLSYETIVFDTAPTGHTLRFLQFPSVLEKALAKVSQLSNQYGPLLNGVLGSSGALpnGQNLNDMMQKLESLR 220
                  *************************************************************************999888752256667********** PP

                  HHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEE.E-TTCSSSTSHHHHHHHHHHHHHHHHHHHHT.TTSEEEEEE--S CS
  ArsA_ATPase 192 eeikkveeiltdpertsfrlVvipEklslkEteRaikeLkkygikvdavivNk.llpeeeqenCeflearkkiqkkylkeieelf.edlevvklplle 287
                  e+i +v+ +++dp+ t+f++V+i+E+lsl+EteR+i+eL++ygi+++ ++vN+ l+p ++++ Ce ++ar+k+qkkyl++ eel+ ed++vvk+pll 
   CCE29248.1 221 ETISEVNTQFKDPDLTTFVCVCIAEFLSLYETERMIQELSNYGIDTHCIVVNQlLFPKKVSD-CEQCNARRKMQKKYLDQYEELYaEDFNVVKMPLLV 317
                  *****************************************************889999995.**********************679********** PP

                  S-S-SHHHHHHHHHHHC CS
  ArsA_ATPase 288 eEvvGlekleklselly 304
                  eEv+G  klek+se+l 
   CCE29248.1 318 EEVRGKGKLEKFSEMLI 334
                  **************985 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   5.8e-15   8.7e-12       7     128 ..      30     162 ..      27     169 .. 0.74
   2 ?   -3.7   0.0       6.5   9.8e+03      98     117 ..     210     229 ..     206     232 .. 0.54

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 5.8e-15
      AAA_31   7 anqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiektlyev.......li.eeknikeaiiktkvenldlipssidLaeaeiel 97 
                 +  KGGvGKTTts+ la  lak    vLl+  Dp  n++ +++ +k  +e +l++         i  + ++++++  +++e+     +   L ++ ++l
  CCE29248.1  30 VGGKGGVGKTTTSCSLAIQLAKVRRSVLLISTDPAHNLSDAFS-QKFGKEARLVDGfdnlsamEIdPNGSMQDLLAGQNTEEDMNAAGGGGLGGMMQDL 127
                 567*************************************887.4555555555542222221465677888888866666665566667788887777 PP

      AAA_31  98 velekk...eeilkellekvkde.YDyiiiDcpPs 128
                 + +         + e+l++vk+  Y  i++D+ P+
  CCE29248.1 128 AFAIPGideAMSFAEVLKQVKSLsYETIVFDTAPT 162
                 66554444366789******9955********997 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.5
      AAA_31  98 velekkeeilkellekvkde 117
                  ++++k e l+e++++v+ +
  CCE29248.1 210 NDMMQKLESLRETISEVNTQ 229
                 44555555555555555554 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   3.2e-15   4.7e-12       2      55 ..      28     197 ..      27     272 .. 0.73

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 3.2e-15
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH...HTTEB-HHHH........................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx........................................... RF
        CbiA   2 aiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlai...leglendiep........................................... 54 
                 +++++kGGvGKTt++++La+ la+ ++ Vll+ +Dp  n++      +g+e    +                                           
  CCE29248.1  28 VFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLISTDPAHNLSDAfsqKFGKEA---Rlvdgfdnlsameidpngsmqdllagqnteedmnaagggglggm 123
                 689**************************************98555444444...35559999999999999999999999999999999999999999 PP

                 .........................................................................C CS
                 .........................................................................x RF
        CbiA  55 .........................................................................d 55 
                                                                                           
  CCE29248.1 124 mqdlafaipgideamsfaevlkqvkslsyetivfdtaptghtlrflqfpsvlekalakvsqlsnqygpllngvL 197
                 99999999966666666665555555555555555555555555555555555555555555555555555550 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   9.9e-09   1.5e-05       3      41 ..      28      66 ..      26      90 .. 0.90
   2 ?   -2.7   0.0       2.1   3.1e+03     147     182 ..     241     277 ..     237     303 .. 0.64

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 9.9e-09
   Fer4_NifH  3 iaiyGkGGiGksttsqnlsaalaemgkkvlivGCDPkaD 41
                + + GkGG+Gk+tts+ l++ la+  + vl++  DP ++
  CCE29248.1 28 VFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLISTDPAHN 66
                5678********************************886 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.1
   Fer4_NifH 147 vtsgelmalyaanniakgiekyak.sggvrlgGliin 182
                 v+ +e+ +ly   ++ + + +y   ++ + +  l+  
  CCE29248.1 241 VCIAEFLSLYETERMIQELSNYGIdTHCIVVNQLLFP 277
                 6667788888888888777777641344555555555 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   1.4e-07   0.00021       9      41 ..      30      62 ..      26      65 .. 0.89
   2 ?    0.1   0.0       0.3   4.6e+02     135     186 ..     234     290 ..     222     323 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.4e-07
        ParA  9 lSgKGGVGKStvavnlAlaLakkglkvgllDaD 41
                + gKGGVGK+t++++lA++Lak   +v l+ +D
  CCE29248.1 30 VGGKGGVGKTTTSCSLAIQLAKVRRSVLLISTD 62
                67********************99999887666 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.3
        ParA 135 plagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgf.....vcpkcgekt 186
                 +l+  v V   + ++l ++++ i+ +++  ++   +v N   f      c++c+ + 
  CCE29248.1 234 DLTTFVCVCIAEFLSLYETERMIQELSNYGIDTHCIVVNQLLFpkkvsDCEQCNARR 290
                 567889999999999999999999999999999999999766511111344444443 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.7e-07   0.00025       6      55 ..      29      78 ..      26      89 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.7e-07
    CBP_BcsQ  6 lqGvRGGvGttsllaaLawalhelgesvlviDlspdnlLrlhFnvdieqr 55
                + G +GGvG+t+ + +La++l +++ svl+i + p+  L   F++++ ++
  CCE29248.1 29 FVGGKGGVGKTTTSCSLAIQLAKVRRSVLLISTDPAHNLSDAFSQKFGKE 78
                56779***********************************9999998766 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.2e-06    0.0019       5      38 ..      28      62 ..      25      66 .. 0.86
   2 ?    0.3   0.0       0.3   4.5e+02      68      92 ..     136     160 ..     129     169 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.2e-06
                EEEE.STTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54  5 llvG.lqGaGKTttlaKLaallkkegkkvllvaaD 38
                ++vG   G+GKTtt   La +l k  ++vll+++D
  CCE29248.1 28 VFVGgKGGVGKTTTSCSLAIQLAKVRRSVLLISTD 62
                45550567*************************99 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHTTSSEEEEEE- CS
       SRP54  68 paavakeavekakeekidvvlvDTa 92 
                 +a   +e +++ k+ ++++++ DTa
  CCE29248.1 136 EAMSFAEVLKQVKSLSYETIVFDTA 160
                 556677889999************9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.5e-05     0.022      11      99 ..      11      98 ..       9     151 .. 0.71
   2 ?   -2.5   0.0       3.9   5.8e+03      81     119 ..     174     212 ..     138     226 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.5e-05
      AAA_16 11 qLlsalervrsgrp.elvllsGesGvGKsslvrellralekd.g.giflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawre 99
                +L+ +l+++ ++r+ + v++ G  GvGK++   +l+ +l k  + +++++++  ++     +s  + q + +e  l +  d++++ e ++   
  CCE29248.1 11 ALEPTLQNLLDQRSlRWVFVGGKGGVGKTTTSCSLAIQLAKVrRsVLLISTDPAHN-----LSDaFSQKFGKEARLVDGFDNLSAMEIDPNGS 98
                566777778888888***************99777766665523255577777777.....55559999999988888888866666665554 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.9
      AAA_16  81 llrqlldeaesaeleawrekleealaavpelagaea.srl 119
                 +l++ l++  s++ +++   l ++l+++++l+  +  +++
  CCE29248.1 174 VLEKALAK-VSQLSNQYGPLLNGVLGSSGALPNGQNlNDM 212
                 33333333.3335555555566666655555544334333 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.7e-05      0.04       6      38 ..      13      43 ..       8      58 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.7e-05
                HHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHH CS
      NB-ARC  6 ekviekLlekdelqslvvalvGmgGvGKttlak 38
                e   ++Ll + +l   +v++ G+gGvGKtt + 
  CCE29248.1 13 EPTLQNLLDQRSLR--WVFVGGKGGVGKTTTSC 43
                55567777677777..*************9765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.3e-05     0.064      35      61 ..      27      53 ..       2     115 .. 0.77
   2 ?   -3.3   0.0       3.8   5.7e+03     130     150 ..     140     159 ..     125     162 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
      AAA_25 35 lallaGapgtGKttlaldlalavatGk 61
                 + + G +g+GKtt  ++la+ +a+ +
  CCE29248.1 27 WVFVGGKGGVGKTTTSCSLAIQLAKVR 53
                46789*****************99644 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.8
      AAA_25 130 vdaleaaieevegvrlvviDp 150
                 ++++ +++++   ++ +v+D+
  CCE29248.1 140 FAEVLKQVKSL-SYETIVFDT 159
                 45566666663.499999998 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017      0.26      20      60 ..      26      66 ..      10      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
                SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-- CS
        PhoH 20 divfaiGpaGtGKtylavalavealkkkkvkriiltrpave 60
                  vf+ G+ G GKt  +++la+++ k ++   +i t pa +
  CCE29248.1 26 RWVFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLISTDPAHN 66
                4799*********************9999988888888765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00036      0.53       1      46 [.      28      75 ..      28     120 .. 0.67
   2 ?   -1.9   0.0       3.1   4.6e+03      24      44 ..     202     225 ..     177     234 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00036
      AAA_18  1 IlltGtpGvGKttlakeLskrl.gf..gvnlrdvakenglllevdpeal 46
                +++ G+ GvGKtt +  L+  l ++  +v l+++ + ++l++ + ++ +
  CCE29248.1 28 VFVGGKGGVGKTTTSCSLAIQLaKVrrSVLLISTDPAHNLSDAFSQK-F 75
                799***************88876668866666666666666666665.2 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.1
      AAA_18  24 f...gvnlrdvakenglllevdpe 44 
                     g+nl+d+ ++ ++l e   e
  CCE29248.1 202 AlpnGQNLNDMMQKLESLRETISE 225
                 045588899998888877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      659  (0.0367561); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2431.03
//
Query:       CCE29249.1  [L=655]
Description: uncharacterized protein CPUR_02942 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-30  104.2   0.2    7.1e-30  103.1   0.2    1.6  1  DWNN        DWNN domain
    6.4e-09   35.5   6.9    2.1e-08   33.8   6.2    2.0  2  zf-CCHC_2   Zinc knuckle
     0.0019   18.0   9.9     0.0019   18.0   9.9    1.7  2  zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
     0.0065   16.5   1.2     0.0065   16.5   1.2    1.9  2  zf-CCHC     Zinc knuckle
  ------ inclusion threshold ------
      0.012   15.8   2.0      0.012   15.8   2.0    1.7  1  FYVE_2      FYVE-type zinc finger
      0.013   15.4   1.8      0.026   14.4   1.8    1.4  1  zf-RING_6   zf-RING of BARD1-type protein
      0.015   15.6   6.9      0.033   14.5   6.9    1.6  1  zf-RING_2   Ring finger domain
      0.045   14.1   0.6      0.045   14.1   0.6    2.2  2  SET         SET domain
      0.052   13.3   6.8       0.11   12.3   6.8    1.5  1  zf-RING_4   RING/Ubox like zinc-binding domain
       0.41   10.5   5.7       0.89    9.4   5.1    1.9  2  zf-Nse      Zinc-finger of the MIZ type in Nse subunit
       0.78    9.8  13.2      0.093   12.7   7.7    2.1  2  zf-RING_5   zinc-RING finger domain
        1.1    9.2   9.4        2.1    8.3   9.4    1.5  1  zf-C3HC4    Zinc finger, C3HC4 type (RING finger)
        1.2    9.4   8.9        3.7    7.8   8.9    1.9  1  zf-C3HC4_4  zinc finger of C3HC4-type, RING


Domain annotation for each model (and alignments):
>> DWNN  DWNN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.2   5.1e-33   7.1e-30       1      74 []       5      78 ..       5      78 .. 0.99

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 5.1e-33
        DWNN  1 vyYkFksqkdyskitfdgtsisvfeLKreIiekkklgkgtdfdLqiynaqtkeeydddselIprntsvivrRvP 74
                v++kFksqk+  +++fdgt+isvfeLKreIi k++lg+gtdfdL+iy +++ eeyddd+++I r+t+vi+rR P
  CCE29249.1  5 VFFKFKSQKEPTRVEFDGTGISVFELKREIIVKSGLGDGTDFDLHIYTDDNSEEYDDDTAIISRSTTVIARRQP 78
                8***********************************************************************98 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   6.2   1.5e-11   2.1e-08       1      21 []     175     195 ..     175     195 .. 0.98
   2 ?   -0.3   0.0      0.72   9.9e+02       3      13 ..     322     332 ..     321     332 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.5e-11
   zf-CCHC_2   1 PpgYvChiCgkkGHyIqdCPt 21 
                 P gY+C +Cg+kGH+Iq CPt
  CCE29249.1 175 PNGYICYRCGNKGHWIQLCPT 195
                 89******************8 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.72
   zf-CCHC_2   3 gYvChiCgkkG 13 
                 ++vC +C+  G
  CCE29249.1 322 DFVCPACQEEG 332
                 689****9887 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.6       5.9   8.1e+03      23      38 ..     180     194 ..     179     195 .. 0.60
   2 !   18.0   9.9   1.4e-06    0.0019       1      40 []     288     328 ..     288     328 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.9
  zf-C3HC4_2  23 CqkCilrsLeekneCP 38 
                 C+ C  +  +  + CP
  CCE29249.1 180 CYRCGNKG-HWIQLCP 194
                 88888883.2334666 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.4e-06
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn.eCPlC 40 
                 +C i   ml +p+    C+ +fC++Ci  +L e++  CP C
  CCE29249.1 288 QCSIDKKMLVEPMKAPCCQKTFCNDCITNALIESDfVCPAC 328
                 79999*******99999************************ PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.2   4.7e-06    0.0065       3      17 ..     180     194 ..     179     195 .. 0.89
   2 ?   -2.1   0.3       3.5   4.9e+03       3      10 ..     325     332 ..     324     332 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.7e-06
                 TSSSSSSSSTTTTST CS
     zf-CCHC   3 CynCGepGHiardCp 17 
                 Cy+CG+ GH+   Cp
  CCE29249.1 180 CYRCGNKGHWIQLCP 194
                 **********98887 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.5
                 TSSSSSSS CS
     zf-CCHC   3 CynCGepG 10 
                 C  C+e+G
  CCE29249.1 325 CPACQEEG 332
                 667***99 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   2.0   8.5e-06     0.012      33     106 ..     263     334 ..     243     339 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.5e-06
      FYVE_2  33 keklekekskrellgnqaklgethCilCleefkllvnskrqCldCklnvCkkCsvenkkekvwlCkiCseaRev 106
                 + k +  ++ +e+ +++ k  e++ ++C  + k+lv+  +    C+++ C+ C ++   e+ ++C +C+e+ ++
  CCE29249.1 263 QAKTKSSTANKEAQAED-KEVEERGLQCSIDKKMLVEPMKA-PCCQKTFCNDCITNALIESDFVCPACQEEGVL 334
                 55555566666676664.44567889999999999987643.45*************************98665 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.8   1.9e-05     0.026       5      47 ..     284     329 ..     282     343 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
   zf-RING_6   5 ekllrcsrctdilrepvclggcehifcsncisdcfgsg...cpvcy 47 
                 e+ l+cs    +l ep+    c++ fc +ci++ +      cp c 
  CCE29249.1 284 ERGLQCSIDKKMLVEPMKAPCCQKTFCNDCITNALIESdfvCPACQ 329
                 66799***************************98754323388886 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   6.9   2.4e-05     0.033      17      44 .]     300     329 ..     288     329 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.4e-05
   zf-RING_2  17 lllpCgHv.fhreClerwlrssst.CPlCr 44 
                 ++ pC+   f+ +C+++ l +s   CP+C+
  CCE29249.1 300 MKAPCCQKtFCNDCITNALIESDFvCPACQ 329
                 244677655******9986555556****5 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.5       2.2     3e+03     108     108 ..     144     144 ..      46     294 .. 0.59
   2 ?   14.1   0.6   3.3e-05     0.045      12     107 ..     320     433 ..     308     483 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.2
                 H CS
                 x RF
         SET 108 g 108
                 +
  CCE29249.1 144 Q 144
                 0 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 3.3e-05
                 TTXEEEEEE..ECCEECHHHHHHHHHH...HTEEEEEXG...GXX..GGSX.HHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSX.... CS
                 xxxxxxxxx..xxxxxxxxxxxxxxxx...xxxxxxxxx...xxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
         SET  12 kgeficeyp..eeiiltkdeadksele...aylfslpea...pkn..laft.kelakasastllqklakdqkqaekedtdaalkasskaesdlna.... 95 
                 + +f+c  +  e  ++ + +ad + ++   +yl++ ++a   p+n  +a++ + ++ +++st +++++ d++q+++ed ++  + s +a  + ++    
  CCE29249.1 320 ESDFVCPACqeEGVLIDDLQADDEASKkiqEYLKDKETAkspPANspPAIQvDSVNDLETSTDVKADEVDDAQEKQEDPEVSSNTSQSATIKSPMtema 418
                 568999888988888888888888888999888885544666666855556***************************999999888877777644445 PP

                 ..XXHCCCCC.HCCC CS
                 ..xxxxxxxx.xxxx RF
         SET  96 ..skpeagaf.saia 107
                     p+a+++ s++a
  CCE29249.1 419 kaKSPTASPTiSETA 433
                 554444444444433 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   6.8   8.2e-05      0.11      17      46 ..     303     331 ..     298     331 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.2e-05
   zf-RING_4  17 pCeCgyqiClfCyhrileeeegrCPaCree 46 
                 pC C+  +C +C +++l e++++CPaC+ee
  CCE29249.1 303 PC-CQKTFCNDCITNALIESDFVCPACQEE 331
                 66.999*********************985 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.1   0.00064      0.89      10      56 ..     285     328 ..     279     329 .. 0.88
   2 ?   -3.0   0.0       4.9   6.7e+03      38      52 ..     347     361 ..     345     363 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00064
                 XXSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC- CS
      zf-Nse  10 islkCPltlqpfeePvtskkCpHvFEreaIlelikrkktvkCPvagC 56 
                   l+C + ++ ++eP++   C+ +F ++ I++ +  +    CP   C
  CCE29249.1 285 RGLQCSIDKKMLVEPMKAPCCQKTFCNDCITNAL-IESDFVCPA--C 328
                 5699****************************99.666778998..7 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.9
                 HHHHHCTTTS-EE-S CS
      zf-Nse  38 aIlelikrkktvkCP 52 
                  I+e++k k+t+k P
  CCE29249.1 347 KIQEYLKDKETAKSP 361
                 799***999999877 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.95   1.3e+03      24      40 ..     179     194 ..     178     195 .. 0.79
   2 ?   12.7   7.7   6.8e-05     0.093      19      43 ..     304     329 ..     288     330 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.95
   zf-RING_5  24 fCekClkkllekeavCp 40 
                 +C +C +k     + Cp
  CCE29249.1 179 ICYRCGNKGH-WIQLCP 194
                 8****99988.777777 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 6.8e-05
   zf-RING_5  19 sCgHifCekClkkll.ekeavCpiCr 43 
                 +C+ +fC++C++++l e+++vCp+C+
  CCE29249.1 304 CCQKTFCNDCITNALiESDFVCPACQ 329
                 79***********************8 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   9.4    0.0015       2.1       1      41 []     289     328 ..     289     328 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0015
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+i +++++ep+++  C+ +fC++Ci++ l  ++ + CP C
  CCE29249.1 289 CSIDKKMLVEPMKAPCCQKTFCNDCITNALI-ESDFVCPAC 328
                 66666777788877778999***********.99999**** PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   8.9    0.0027       3.7       1      42 []     289     328 ..     289     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0027
  zf-C3HC4_4   1 CPiCldYLekPvsleC.GhsfClsCisslqkepdgeqllCplC 42 
                 C i  + L +P+  +C   +fC  Ci++   e+   ++ Cp C
  CCE29249.1 289 CSIDKKMLVEPMKAPCcQKTFCNDCITNALIES---DFVCPAC 328
                 55556678899998852789********99999...489***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1571  (0.0876234); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 4681.74
//
Query:       CCE29250.1  [L=476]
Description: probable cytosolic nonspecific dipeptidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-33  115.4   0.0    3.8e-33  115.0   0.0    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    1.7e-11   44.0   0.0    2.9e-11   43.2   0.0    1.3  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
      0.059   13.1   0.0       0.15   11.8   0.0    1.6  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.0   6.3e-37   3.8e-33       1     205 [.      94     467 ..      94     469 .. 0.90

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 6.3e-37
                    EEEEES-BSSTTCGGGSSS.TTSEE.ETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHH.TTTCESE CS
                    xxxxxxxxxxxxxxxxxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwtt.pfslt.eedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegle.erekvda 93 
                    l+++H+Dv+p+e++dgw t pf+l  +++G+++GrG++d+kg vl++l a++a++++gi+ + ++ + f++ EE g++G   +++ +e +++ +d 
     CCE29250.1  94 LVYGHYDVQPAEKSDGWATePFELSvDDKGRMFGRGSTDDKGPVLGWLNAIEAHQKAGIEFPVNLLMCFEGMEEYGSEGLDDFIQ-AEaKKYFADT 188
                    689*******99999**********9788*********************************************888999****9.4435666666 PP

                    EEEEEEESSSBTCHSTETEEEE.......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxx.......................................................................... RF
  Peptidase_M20  94 vfelhieepgileagklaigvv.......................................................................... 115
                       + i++  +l  +k  + ++                                                                          
     CCE29250.1 189 DA-VCISDNYWLGTEK--PCLTyglrgcnyysievsgpgadlhsgvfggtaqepmtdlvrllgslvdtngkiqipgimeqvapvtqeeeglydgis 281
                    44.4566555555444..5555889999******************************************************************** PP

                    ...........................................................................................EEEEE CS
                    ...........................................................................................xxxxx RF
  Peptidase_M20 116 ...........................................................................................kveve 120
                                                                                                               + +v 
     CCE29250.1 282 ftmdnifeslgskttifddrkktlmarwrfpslsihgvegafsnpgaktvipakvigkfsirtvpnmdidttnncvykyveeqfaklgsknTMKVY 377
                    *****************************************************************************************8768888 PP

                    EEEEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEES...SSBHTHHHHTTTEEEEE..EESSGGCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 121 lleggapvtln.dsplvkalaeaaeelfgekvelivsg...pggtdarffagiptvmi..fgpgsglaHspnEyvdledlekgikvlarll 205
                      + g+ ++++  +  + a+a+a+e+++g++++++  g   p +  +    g  +v++  +g + ++aHs nE++d +++ +gik+l ++l
     CCE29250.1 378 AQHTGKWWAASpKHWNFSAAAKATERVWGVQPDFTREGgsiPVTLTFEEATGK-NVLLlpMGSSTDGAHSINEKLDKRNYIEGIKLLGAYL 467
                    7799999999955555***************9999555488888888888888.66443888666*********************99887 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   4.9e-15   2.9e-11       4     105 ..     211     365 ..     208     368 .. 0.93

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 4.9e-15
                 -EEEEEEEE..EE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC...................................................TC CS
   M20_dimer   4 kGlaggkit..vkgkagHsg.apgagaNAieklarllaeledeegdia..............................................eersl 53 
                 +G   + i+    g ++Hsg ++g ++ +++ l+rll +l d++g+i+                                              +  ++
  CCE29250.1 211 RGCNYYSIEvsGPGADLHSGvFGGTAQEPMTDLVRLLGSLVDTNGKIQipgimeqvapvtqeeeglydgisftmdnifeslgskttifddrkktLMARW 309
                 55555555544999************************************************************************************* PP

                 CTCCCCCEECCE-C....CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCC CS
   M20_dimer  54 prttlnvtgiegGs....aknvipdeaeakidiRllpgedpeevleeieeilekea 105
                 + ++l++ g+eg +    ak+vip+++  k++iR++p++d ++  + + +++e++ 
  CCE29250.1 310 RFPSLSIHGVEGAFsnpgAKTVIPAKVIGKFSIRTVPNMDIDTTNNCVYKYVEEQF 365
                 *******************************************9999999999876 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.4e-05      0.15       2      86 ..      80     183 ..      79     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.4e-05
                    EEEEESTTCESEEEEEEEE--B-TTT................TCC.T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHH CS
  Peptidase_M28   2 viatlegkatdevlllgAHyDsvgvg................rgp.ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSka 80 
                    v+a++ ++++++++l+ +HyD  + +                +g     G +D+  +v   L+ +++ ++ g +   ++ + f + EE+g  G + 
     CCE29250.1  80 VLARYGNDKSKRTILVYGHYDVQPAEksdgwatepfelsvddKGRmFGRGSTDDKGPVLGWLNAIEAHQKAGIEFPVNLLMCFEGMEEYGSEGLDD 175
                    567775555588************9999999999999988653336668*********************99999***************999999 PP

                    HHH..HHC CS
  Peptidase_M28  81 fak..akp 86 
                    f++  ak+
     CCE29250.1 176 FIQaeAKK 183
                    99643233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3409.03
//
Query:       CCE29251.1  [L=286]
Description: uncharacterized protein CPUR_02944 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-17   64.2   0.1    1.6e-17   63.6   0.1    1.3  1  Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centrom
  ------ inclusion threshold ------
       0.34   10.1   1.8        3.4    6.8   0.0    2.1  2  DUF4106       Protein of unknown function (DUF4106)


Domain annotation for each model (and alignments):
>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.1   1.8e-21   1.6e-17       2      97 ..      95     210 ..      94     216 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 1.8e-21
                   EEEETTTS-EEEECCCEEE...EECC.........................CEEEES---CCCEEEECEEEETTSTTEEEEEEEETTT--EEEEEEE CS
  Yippee-Mis18   2 vfqCkkCktilgdslqlvs...egra.........................lnivvlkkvtrnvvvgkelvtdeegkctystlsCkgCnsvlGwkYk 70 
                   +++C++C+t+l+ + q++s   +gr+                         lni + ++  r++v+g+++v+d         ++C++C+ +lGwkY+
    CCE29251.1  95 TLRCRSCSTDLAFTAQIISkgfTGRYghaylvapgpaqspatedadaqpslLNIRIGRSEDRQLVTGWHTVAD---------ICCATCACNLGWKYV 182
                   589****************776444477789999999999999******************************.........*************** PP

                   ECSCC.CCCCCTCEEEEGGGEEEEESSS CS
  Yippee-Mis18  71 steee.lkykrglfiletkaitsyslge 97 
                   +++e+ ++yk+g++ile++++ +   + 
    CCE29251.1 183 DAQEAsQTYKVGKYILEMERVVKHRSWD 210
                   ********************99877765 PP

>> DUF4106  Protein of unknown function (DUF4106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   1.1     0.012   1.1e+02     183     249 ..      15      79 ..       7      92 .. 0.67
   2 ?    6.8   0.0   0.00038       3.4     184     217 ..     111     144 ..     105     153 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.012
     DUF4106 183 pglpktftsshgh..rhrhapkptqqptvqnpaqqptqqptvqqpaqvqqpaqqpppqpaqqptvqnpa 249
                 p +p  + ss     rhr++  pt  pt    a   +  pt   pa    pa      p+      +p+
  CCE29251.1  15 PIFPAFLLSSFNFvlRHRKSTAPT-SPTASTAASSSSSSPT-SSPA--SSPASSLATIPSGSRRHSSPV 79 
                 556666677765433888888887.5899999999888998.6777..566666665555555555555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00038
     DUF4106 184 glpktftsshghrhrhapkptqqptvqnpaqqpt 217
                  + k ft  +gh +  ap p+q p+ ++   qp+
  CCE29251.1 111 IISKGFTGRYGHAYLVAPGPAQSPATEDADAQPS 144
                 5789*********************999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2039.66
//
Query:       CCE29252.1  [L=544]
Description: uncharacterized protein CPUR_02945 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-15   57.8   0.2    8.1e-15   55.6   0.2    2.1  2  SET       SET domain
    6.7e-08   32.5  11.3    1.7e-07   31.2  11.3    1.8  1  zf-MYND   MYND finger


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.2     9e-19   8.1e-15       1     168 [.      11     144 ..      11     145 .. 0.76
   2 ?   -2.4   0.0      0.62   5.6e+03       8      37 ..     181     230 ..     178     291 .. 0.63

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 9e-19
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.....HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.....aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdln 94 
                 G G++At++Ipkg+ i  + e+++++  +++  e+      +  + l+                                                   
  CCE29252.1  11 GKGLVATRNIPKGTRI--LSERPLIHAPFDSSQEQRktiiyPQVEALN--------------------------------------------------- 56 
                 88**************..898889999998888888999874455555................................................... PP

                 XXXHCCCCC.HCCCHEEEETEEEEEECCC.................GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  95 askpeagaf.saiagysidaralksgnga.................gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                   k+e + f s +++y++  +a+ + +                   +pla  +NH+Cd N++  + +  + +r +v A rdI++GeE+t+ Y
  CCE29252.1  57 --KEEREIFlSFPNRYAFSDSATRYNGIFrtncisaaskprkivafFPLACRINHDCDENATKDWNP--DTKRHTVHAMRDIEEGEEITVAY 144
                 ..3444445566666665544444444445555566666666667****************777777..*********************99 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.62
                 SXBXTTXEEE......EEEECCEECHHHHHHHHHH..............H CS
                 xxxxxxxxxx......xxxxxxxxxxxxxxxxxxx..............x RF
         SET   8 edIpkgefic......eypeeiiltkdeadksele..............a 37 
                 +d++ ++++c      e+p+e  lt+  + +++                +
  CCE29252.1 181 RDLKIDQILClisrnaEFPRERTLTPSLTMLKCIDtrvsllrelhredkN 230
                 67777777776666666666666666655555555555333333333332 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2  11.3   1.9e-11   1.7e-07       1      38 []     468     510 ..     468     510 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.9e-11
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg+   + + k+Ca+C+s +YCsk+Cq   w  k Hk  C
  CCE29252.1 468 CHGCGRiaaSSSMKRCAKCRSLWYCSKDCQMVGWvtKAHKIGC 510
                 ******98777777********************8667*9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4168.87
//
Query:       CCE29253.1  [L=415]
Description: uncharacterized protein CPUR_02946 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-06   28.5  11.0    3.2e-06   27.1  11.0    1.8  1  zf-MYND   MYND finger


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1  11.0   1.8e-10   3.2e-06       1      38 []     339     381 ..     339     381 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.8e-10
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg+   + + ++C++C s +YC+k+Cq   w  k Hk  C
  CCE29253.1 339 CHGCGTaaiSSSMQRCTKCWSFWYCNKDCQMVGWitKGHKLNC 381
                 ******77777777********************8667**999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2909.52
//
Query:       CCE29254.1  [L=190]
Description: uncharacterized protein CPUR_02947 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.062   13.4   0.2       0.12   12.5   0.2    1.5  1  RINGv     RING-variant domain


Domain annotation for each model (and alignments):
>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   6.9e-06      0.12       1      25 [.      70      94 ..      70     100 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.9e-06
                ETTTTEE-SSSS--B-SS--STCCC CS
       RINGv  1 CriCleeeeeseplispCkCrGslk 25
                CriC+ ++ + +p+   C  rG l 
  CCE29254.1 70 CRICHTTAPSVKPFSIACDTRGALD 94
                *********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1328.95
//
Query:       CCE29255.1  [L=415]
Description: uncharacterized protein CPUR_02948 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-06   28.7  10.4    2.7e-06   27.4  10.4    1.8  1  zf-MYND   MYND finger


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4  10.4   1.5e-10   2.7e-06       1      38 []     339     381 ..     339     381 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.5e-10
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg+   + + ++C++C s +YC+k+Cq   w  k Hk  C
  CCE29255.1 339 CHGCGTaaiSSSMERCTKCWSFWYCNKDCQMVGWitKGHKLNC 381
                 ******76666666********************8667**999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2942.82
//
Query:       CCE29256.1  [L=554]
Description: uncharacterized protein CPUR_02949 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-14   52.4   0.6    2.5e-13   50.7   0.6    1.9  1  SET        SET domain
    8.6e-07   28.9  10.5    8.6e-07   28.9  10.5    2.4  3  zf-MYND    MYND finger
  ------ inclusion threshold ------
       0.13   11.7   0.1       0.19   11.2   0.1    1.2  1  WASH_WAHD  WAHD domain of WASH complex


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.6   4.2e-17   2.5e-13       1     168 [.      20     154 ..      20     155 .. 0.76

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 4.2e-17
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.....HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.....aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdln 94 
                 G G++At++Ipkg  i  + e+++++  +++ +e+                                        q qa++e++++    +++ +s   
  CCE29256.1  20 GKGLVATRNIPKGMRI--LSERPLIHAPFNSSNEQRkkmvyS---------------------------------QVQALNEKERDIFLSFPNRYSFSD 83 
                 88**************..89999***9999999988554321.................................334455555555555555555552 PP

                 XXXHCCCCC.HCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  95 askpeagaf.saiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                 +   + ++  + +++   +++ ++++ +++p a  +NH+Cd N+++ +    +  + +v A rdI++GeE+ti Y
  CCE29256.1  84 S--ATRYNGiFRTSSILYQTEPQNKTFAIFPEACRINHDCDENAFHDWNC--DTQQQTVHAMRDIEEGEEITIAY 154
                 2..22222244555555677788888888***************999999..9*********************9 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.9       2.6   1.6e+04      12      16 ..     177     181 ..     169     183 .. 0.70
   2 ?   -3.2   0.7       1.6   9.4e+03       4      17 ..     289     301 ..     288     304 .. 0.67
   3 !   28.9  10.5   1.4e-10   8.6e-07       1      38 []     478     520 ..     478     520 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.6
                 E-TTT CS
     zf-MYND  12 kCagC 16 
                 +C  C
  CCE29256.1 177 RCRAC 181
                 67777 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.6
                 T--.B-SCE-TTTS CS
     zf-MYND   4 CgkaealkkCagCk 17 
                 C     +  C+ C+
  CCE29256.1 289 CSH-STHDECGICR 301
                 555.5566899885 PP

  == domain 3  score: 28.9 bits;  conditional E-value: 1.4e-10
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cgk   + + ++Ca+C s +YC+k+Cq   w  k Hk  C
  CCE29256.1 478 CHGCGKiaiSSSMQRCAKCWSFWYCNKDCQMVGWitKGHKLNC 520
                 ******98888888********************8667**999 PP

>> WASH_WAHD  WAHD domain of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.3e-05      0.19      55     108 ..      51     102 ..      48     189 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.3e-05
   WASH_WAHD  55 neRveiaqakiaklkeskkaikiyspakyPasdllqkyestftatnsiaaveke 108
                 ++R +++  ++++l+e+ + i +  p++y  sd  + y+ +f  t+si+  ++e
  CCE29256.1  51 EQRKKMVYSQVQALNEKERDIFLSFPNRYSFSDSATRYNGIF-RTSSILY-QTE 102
                 67889999**********************************.5555444.222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4170.03
//
Query:       CCE29257.1  [L=556]
Description: uncharacterized protein CPUR_02950 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-15   55.3   0.3    4.9e-14   53.1   0.3    2.1  1  SET          SET domain
    5.9e-07   29.5  15.1    5.9e-07   29.5  15.1    2.1  2  zf-MYND      MYND finger
  ------ inclusion threshold ------
       0.14   12.5   0.0       0.32   11.3   0.0    1.6  1  TPR_12       Tetratricopeptide repeat
       0.89    9.9   4.0          2    8.7   1.6    2.8  3  YsaB         YsaB-like lipoprotein
       0.94    9.3   3.8        2.1    8.2   3.8    1.5  1  DUF2797      Protein of unknown function (DUF2797)


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.3   1.4e-17   4.9e-14       1     168 [.      20     153 ..      20     154 .. 0.71

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 1.4e-17
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH....................HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele....................aylfslpeapknlaftkelakasastllqklakdqkqaekedt 79 
                 G G++At+dIp+g+ i  + e+++++  +    e+                                                                
  CCE29257.1  20 GKGLVATRDIPEGTRI--LSERPLIHVPFETSDEERkriiclqvkylnkeqrdiflS------------------------------------------ 74 
                 88**************..666666666666555555557777774333333322221.......................................... PP

                 HHTHHHHHHHXTTTSX....XXHCCCCC.HCCCHEEEETEEEEEECCC.GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxx....xxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  80 daalkasskaesdlna....skpeagaf.saiagysidaralksgnga.gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                              +++    s   a  +   +++++i+a+  +  + a +p a  +NH+Cd+N++ ++    +  +++v A rdI++GeE+t+ Y
  CCE29257.1  75 -------------FPNrfphS-DAATLYsGIFRTSCIQAANKPQESFAiFPHACRINHDCDDNATKEWNC--DTQQLTVHAMRDIEEGEEITVAY 153
                 .............21122211.112222355588889988777777779***************999999..9********************99 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   1.4         5   1.8e+04      13      21 ..     177     185 ..     174     185 .. 0.67
   2 !   29.5  15.1   1.6e-10   5.9e-07       1      38 []     480     522 ..     480     522 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.9 bits;  conditional E-value: 5
                 -TTTS-SEE CS
     zf-MYND  13 CagCksvfY 21 
                 C  C+  +Y
  CCE29257.1 177 CRACSLPKY 185
                 777776555 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 1.6e-10
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cgk   + + k+Ca+C s +YCsk+Cq   w  k Hk  C
  CCE29257.1 480 CHGCGKkakSSSMKRCAKCWSFWYCSKDCQMVGWitKAHKVTC 522
                 ******65555555********************8667***99 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     9e-05      0.32       4      44 ..     242     282 ..     239     286 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9e-05
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhplt 44 
                  + ++ a +  ++g+++  + + ++a +i++rl G d+p t
  CCE29257.1 242 MTISEAAGLAIKMGDLARGRVFSQRAAAIWQRLAGSDNPIT 282
                 45557889999***************************987 PP

>> YsaB  YsaB-like lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.6   0.00057         2      13      42 ..     113     142 ..     101     179 .. 0.81
   2 ?   -2.1   0.0       1.4   5.1e+03      51      64 ..     337     350 ..     336     352 .. 0.89
   3 ?   -3.9   0.0         5   1.8e+04      49      64 ..     510     525 ..     508     533 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00057
        YsaB  13 sldmeqlCkdkaairyntdaqkidvngfeq 42 
                    ++  C d+a + +n d+q+++v  +  
  CCE29257.1 113 ACRINHDCDDNATKEWNCDTQQLTVHAMRD 142
                 5567889******************87754 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
        YsaB  51 GrtareesfvCsfd 64 
                 G+t ++  f C f 
  CCE29257.1 337 GTTIQHRDFFCPFS 350
                 899********996 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 5
        YsaB  49 lsGrtareesfvCsfd 64 
                 + G  ++  + +C f 
  CCE29257.1 510 MVGWITKAHKVTCKFL 525
                 6677788888899885 PP

>> DUF2797  Protein of unknown function (DUF2797)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.8   0.00058       2.1      10      57 ..     476     522 ..     471     541 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00058
     DUF2797  10 gerrCvnCgrktkksfsqgvCakCfkklaeadecimkpekchahlgtc 57 
                 + ++C +Cg+k k+s s+ +CakC +     ++c m    ++ah+ tc
  CCE29257.1 476 DLIHCHGCGKKAKSS-SMKRCAKCWSFWYCSKDCQMVGWITKAHKVTC 522
                 568********8877.9*******776666677777655555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.49
# Mc/sec: 3399.92
//
Query:       CCE29258.1  [L=543]
Description: uncharacterized protein CPUR_02951 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-13   50.4   1.2    1.7e-12   48.0   1.2    2.1  1  SET       SET domain
    9.5e-08   32.0  10.9    2.8e-07   30.5  10.9    1.8  1  zf-MYND   MYND finger
  ------ inclusion threshold ------
       0.17   11.7   0.0        0.3   10.8   0.0    1.4  1  FTCD_C    Formiminotransferase-cyclodeaminase


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   1.2   2.9e-16   1.7e-12       1     168 [.      11     144 ..      11     145 .. 0.64

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 2.9e-16
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH........HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele........aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaes 91 
                 G G++At++I kg+ i  + e+++++  + +  e+                                              a+++++++    +++ ++
  CCE29258.1  11 GKGLVATRNITKGTRI--LSERPLISAPNEVSTEEResiiydqvK------------------------------------AMNKKERDIFLSFPNRYE 71 
                 88**************..787777777777777755654332220....................................222333333333332222 PP

                 TTSXXXHCCCCCHCCCHEEEETEEEEEECCC................GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  92 dlnaskpeagafsaiagysidaralksgnga................gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                                     d++++++g                   +p a  +NH+C++N    +   ++ +r++v A rdI +GeE+t++Y
  CCE29258.1  72 FS------------------DSATQYHGIFGtscilaasepqhifaiFPHACRINHDCNNNGLKDWN--HDTNRYTVHAMRDIHAGEEITVSY 144
                 22..................222222222224444444444445558**************955555..5*********************** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5  10.9   4.7e-11   2.8e-07       1      38 []     467     509 ..     467     509 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 4.7e-11
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ C++   + + k+Ca+C s +YCsk+Cq   w  k Hk  C
  CCE29258.1 467 CHGCNTigaSSSMKRCAKCLSFWYCSKNCQIVSWvtKGHKAFC 509
                 9*****98888888********************8667**999 PP

>> FTCD_C  Formiminotransferase-cyclodeaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     5e-05       0.3      73     119 ..     159     205 ..     150     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5e-05
                 HHHHHHHHHHTTTT..........S-HHHHHHHHHHHHHHHHHHHHH CS
      FTCD_C  73 eDaeaFnevmeayklpketeeekaareeaiqealkkavevPlelark 119
                 eDa  F+ +  +++lp+e+ ee++++ +++ + +k+a evPle+  +
  CCE29258.1 159 EDAMHFTCICSTCSLPDEQREERDHKIDQLVSLIKRADEVPLECTTD 205
                 7999**************************************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3911.58
//
Query:       CCE29259.1  [L=294]
Description: uncharacterized protein CPUR_02952 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0052   16.7   0.1      0.065   13.2   0.0    2.1  2  F-box-like_2  F-box-like domain


Domain annotation for each model (and alignments):
>> F-box-like_2  F-box-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.7e-06     0.065      25      44 ..      11      30 ..       7      56 .. 0.82
   2 ?    1.1   0.0     0.021   3.8e+02      53      92 ..     141     186 ..     106     192 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.7e-06
  F-box-like_2 25 lPdellelifkgCkdpayep 44
                   P e+ +lif++C+d+ ++ 
    CCE29259.1 11 FPTEIHRLIFEHCYDDDLKS 30
                  59**************9987 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.021
  F-box-like_2  53 yrrkrkhieylLaqpkqcralkkl.......ltptskplWldelrvm 92 
                   + r  ++i+ +Laq    r+++++       + p+++   l++l ++
    CCE29259.1 141 FDR-DYSILDALAQDPCYRTVRNVfcmecddFYPRDEVWILRNLTTH 186
                   444.6889999999999999999966666666666655556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2260.86
//
Query:       CCE29260.1  [L=551]
Description: uncharacterized protein CPUR_02953 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-13   49.6   0.0    3.1e-12   47.2   0.0    2.3  2  SET          SET domain
    4.6e-08   33.0  11.5    1.6e-07   31.3  11.5    2.0  1  zf-MYND      MYND finger
  ------ inclusion threshold ------
       0.12   13.1   0.1         24    5.6   0.0    3.1  3  SAF          SAF domain
       0.76    9.6   2.8        1.5    8.7   2.8    1.4  1  Amastin      Amastin surface glycoprotein


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.4   1.5e+04     151     159 ..       9      17 ..       5      17 .. 0.81
   2 !   47.2   0.0   6.9e-16   3.1e-12       1     168 [.      20     153 ..      20     154 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.4
                 EEEESSXBX CS
                 xxxxxxxxx RF
         SET 151 avfAtrdIk 159
                 a++A+rdI+
  CCE29260.1   9 AMYALRDIP 17 
                 789999996 PP

  == domain 2  score: 47.2 bits;  conditional E-value: 6.9e-16
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.....HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.....aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdln 94 
                 G G++At+ Ipkg+ i  + e +++   + + +++      ++ + l+                                            k+ +d+ 
  CCE29260.1  20 GKGLVATRTIPKGTRI--LSEQPLIAVPFGKSEKWRgkfitQKVKALK--------------------------------------------KKQRDAF 72 
                 88**************..787778888888888888655554444444............................................2222222 PP

                 XXXHCCCCCHCCCHEEEETEEEEEECCC................GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  95 askpeagafsaiagysidaralksgnga................gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                  s p++  f       id+++++ g  +                +p a ++NH+Cd+N+ +   n ++ +r +v A rdI +GeE+t++Y
  CCE29260.1  73 LSMPNEFRF-------IDTTTRYIGIFEtnslpaddelgkknaiFPKALLINHDCDDNA-WKMWN-ENIKRHTVHAMRDIHAGEEITLSY 153
                 122333333.......3333333333333333333333444555***************.44444.69********************** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3  11.5   3.5e-11   1.6e-07       1      38 []     477     519 ..     477     519 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 3.5e-11
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg+   a + k+C+gC s +YC+k+Cq+  w  k Hk+ C
  CCE29260.1 477 CHGCGNdaaAASMKRCTGCWSLWYCNKDCQKVGWtlKFHKFNC 519
                 ******86555556********************6668****9 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0054        24       4      17 ..      23      37 ..      20      45 .. 0.81
   2 ?    3.5   0.0     0.024   1.1e+02       4      18 ..     137     151 ..     136     152 .. 0.84
   3 ?   -3.4   0.0       3.7   1.6e+04      47      56 ..     253     262 ..     250     267 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0054
                EEESSTB-TT-BE.B CS
         SAF  4 vvAardikaGevi.t 17
                +vA+r i++G++i +
  CCE29260.1 23 LVATRTIPKGTRIlS 37
                89*********9952 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.024
                 EEESSTB-TT-BEBT CS
         SAF   4 vvAardikaGevite 18 
                 v A rdi aGe+it 
  CCE29260.1 137 VHAMRDIHAGEEITL 151
                 56889*******985 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.7
                 ESS-B-TT-B CS
         SAF  47 atrdikaGep 56 
                 a++d+++G +
  CCE29260.1 253 ARSDLARGRV 262
                 5666666654 PP

>> Amastin  Amastin surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.8   0.00033       1.5      25      58 ..     490     522 ..     480     525 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00033
     Amastin  25 ke.saciTlWglkedcdsvsytlrtselwkeCprr 58 
                 k+ ++c  lW  ++dc++v +tl+ ++   +C+ +
  CCE29260.1 490 KRcTGCWSLWYCNKDCQKVGWTLKFHKF--NCKAL 522
                 44699***********************..**976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3920.50
//
Query:       CCE29261.1  [L=335]
Description: uncharacterized protein CPUR_02954 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-06   25.9  15.9    1.6e-05   24.9  15.9    1.5  1  zf-MYND   MYND finger


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9  15.9   8.8e-10   1.6e-05       1      38 []     259     301 ..     256     301 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 8.8e-10
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg+   a + k+C+gC s +YC+k+Cq   w  k Hk  C
  CCE29261.1 259 CHGCGNiaaAASMKRCSGCLSFWYCNKDCQMVGWvtKGHKACC 301
                 66666697666777********************855699888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2498.12
//
Query:       CCE29262.1  [L=567]
Description: uncharacterized protein CPUR_02955 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-13   49.2   0.1    2.1e-12   47.8   0.1    1.8  1  SET       SET domain
    4.5e-07   29.8  13.3    1.3e-06   28.4  13.3    1.8  1  zf-MYND   MYND finger
     0.0025   18.4   0.1        1.3    9.7   0.0    2.7  2  SAF       SAF domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.1   3.5e-16   2.1e-12       1     168 [.      36     169 ..      36     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 3.5e-16
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH..HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele..aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdlnask 97 
                 G G++At+dIpkg+ i  + e +++t   ++  e+    + ++++                      +l+ dq+ a  +  ++  ++s ka+  l    
  CCE29262.1  36 GKGLVATRDIPKGTRI--LSEQPLITLPVKVSAEKApeLLSRQWK----------------------SLKLDQRTAYLSLHNNFENVSKKAAPQL---- 106
                 88**************..777677777777777766655555577......................5566666666666666666666665555.... PP

                 HCCCCCHCCCHEE.....EETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  98 peagafsaiagys.....idaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                       s + +++     +d    +        a+ +NH+C+ N + ++ +  + +r +v A+rdI +GeE+t++Y
  CCE29262.1 107 --I---SIFYSNCrefgpVD--KSAIYLE----ASRINHDCESNTEGEWNP--NIKRHTVHAIRDIHAGEEITLCY 169
                 ..2...33344444444555..3344444....488*********999999..9*********************9 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4  13.3   2.1e-10   1.3e-06       1      38 []     491     533 ..     488     533 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 2.1e-10
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg+   a++ k+C+gC s +YC+k+Cq   w  k Hk +C
  CCE29262.1 491 CHGCGNsaaADSMKRCSGCLSFWYCNKDCQMIGWvtKGHKASC 533
                 77777786666666********************8667***99 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00022       1.3       4      19 ..      39      56 ..      36      74 .. 0.80
   2 !    5.7   0.0    0.0039        24       4      17 ..     153     166 ..     152     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00022
                EEESSTB-TT-BE..BTT CS
         SAF  4 vvAardikaGevi..ted 19
                +vA+rdi++G++i  +++
  CCE29262.1 39 LVATRDIPKGTRIlsEQP 56
                8***********975444 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0039
                 EEESSTB-TT-BEB CS
         SAF   4 vvAardikaGevit 17 
                 v A+rdi aGe+it
  CCE29262.1 153 VHAIRDIHAGEEIT 166
                 679*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 4059.42
//
Query:       CCE29263.1  [L=388]
Description: uncharacterized protein CPUR_02956 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00058   20.3   0.1     0.0012   19.3   0.1    1.5  1  SET       SET domain
     0.0057   17.0   0.2      0.015   15.7   0.2    1.7  2  SOCS      Suppressor of cytokine signalling


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   1.3e-07    0.0012     126     168 ..       7      47 ..       3      48 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.3e-07
                 GGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 126 arflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                 a+ +N +C  N+++ + +  + +r +v A rdI  GeE+t+ Y
  CCE29263.1   7 ASRINYDCASNAEEDWNS--NIKRHTVHAMRDIHVGEEITLPY 47 
                 4789********999999..9*******************988 PP

>> SOCS  Suppressor of cytokine signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.1   9.8e+03      35      41 ..      52      58 ..      27      60 .. 0.68
   2 !   15.7   0.2   1.7e-06     0.015      31      58 ..      86     113 ..      70     114 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
        SOCS 35 srRSLRQ 41
                s+R+ RQ
  CCE29263.1 52 STRTTRQ 58
                6777777 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.7e-06
        SOCS  31 rkslsrRSLRQklqDavGqClPlrshrr 58 
                 rk +   SLRQ  +D+v +C P+rs ++
  CCE29263.1  86 RKLFQIASLRQVYEDTVSLCPPIRSLQH 113
                 6677778*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2841.31
//
Query:       CCE29264.1  [L=539]
Description: uncharacterized protein CPUR_02957 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-13   50.2   1.2    1.8e-12   48.0   1.2    2.0  1  SET          SET domain
    1.2e-08   34.9  13.6    1.2e-08   34.9  13.6    2.1  2  zf-MYND      MYND finger


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   1.2     2e-16   1.8e-12       1     168 [.      19     154 ..      19     155 .. 0.72

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 2e-16
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH...HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele...aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdlnas 96 
                 G G++At +I kg+ i++ +  i l    +dk+  +   + l++l+                                    ++a +a+ +  +++   
  CCE29264.1  19 GKGLVATAKIIKGTRILSEQAAIALPFGLPDKERRKiisQQLKTLN------------------------------------NDARNAFLSLQNRF--- 78 
                 6677777777777777544443444444444444444455555555....................................55555555555555... PP

                 XHCCCCC...HCCCHEEEETEEEEEECCC.....GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxx...xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  97 kpeagaf...saiagysidaralksgnga.....gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                  p+++++   +++++++i+ +++ +g+ +     + +a+++NH+C++N++ ++ n  + +r  + A+rdI++GeE+t++Y
  CCE29264.1  79 -PTKSQYvgiFNTNSLCIK-TSTDEGSFVdqaaiFLIASLINHNCENNAQQSWNN--NTRRHNIHALRDIQEGEEITLSY 154
                 .888888999999999999.4466666666888899*************999999..9********************** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.5         1   9.2e+03      12      16 ..     218     222 ..     207     239 .. 0.61
   2 !   34.9  13.6   1.3e-12   1.2e-08       1      38 []     463     505 ..     463     505 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1
                 E-TTT CS
     zf-MYND  12 kCagC 16 
                 +C  C
  CCE29264.1 218 QCYHC 222
                 77777 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 1.3e-12
                 -TTT--....B-SC..E-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealk..kCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg        +  +C+ C s +YCskeCq+a+w  k Hkt+C
  CCE29264.1 463 CHGCGAkaaVA--SmkRCSLCLSFWYCSKECQTAAWttKAHKTDC 505
                 9*****64333..266********************5445***** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       871  (0.0485805); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3780.32
//
Query:       CCE29265.1  [L=836]
Description: uncharacterized protein CPUR_02958 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-23   83.1   5.4    1.2e-10   42.0   0.4    3.5  2  SET       SET domain
    1.4e-08   34.7  13.3    4.8e-08   33.0  13.3    2.1  1  zf-MYND   MYND finger
     0.0015   19.1   0.0        6.3    7.5   0.0    4.1  4  SAF       SAF domain
     0.0095   16.2   0.9       0.56   10.5   0.2    2.6  2  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.02   14.9   2.3        3.7    7.6   0.2    2.4  2  MOSC      MOSC domain
      0.079   13.0   0.0        5.4    7.1   0.0    2.5  2  Stb3      Putative Sin3 binding protein
      0.081   12.1   0.0        7.9    5.6   0.0    2.2  2  HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fus


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.4   4.9e-14   1.2e-10       1     168 [.      19     153 ..      19     154 .. 0.67
   2 !   40.9   0.6     1e-13   2.6e-10       1     168 [.     545     679 ..     545     680 .. 0.68

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 4.9e-14
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.......HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.......aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesd 92 
                 G G++A+++Ipkg+ i  + e +++t  ++++  le       + ++ l+++                                 +++ +         
  CCE29265.1  19 GKGLVANRNIPKGTRI--ISEQALFTIPDYENLSLEekkrlvcQQFDALSRD---------------------------------EKDVY--------- 73 
                 88**************..7777777777777777777777666555555511.................................11111......... PP

                 TSXXXHCCCCCHCCCHEEEE..........TEEEEEECCC.....GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  93 lnaskpeagafsaiagysid..........aralksgnga.....gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                   +s  + ++f       +d          ++ ++ g  +     +p  + +NH+C  N++  +    + +r +  A+rdI+ GeE+ti+Y
  CCE29265.1  74 --MSLLNTRPF-------DDsreqcfgiffTSRQHLGQESdsagiFPETSRINHDCGSNAYNVWNE--NIKRQTTHAIRDIRSGEEITINY 153
                 ..111222222.......2211111112223344444444777889999***********888888..9********************** PP

  == domain 2  score: 40.9 bits;  conditional E-value: 1e-13
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.......HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.......aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesd 92 
                 G G+++t++Ipkg+ i  ++e +++t   +d   le       + ++ l+                                 +d+++     +     
  CCE29265.1 545 GKGLVTTRNIPKGTRI--IAEQALFTIPGWDALNLEeqkrsicQQMDALS---------------------------------DDQRDTFMSLH----- 603
                 88**************..89889999988888888876665553333333.................................12222222222..... PP

                 TSX...XXHCCCCC...HCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxx...xxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  93 lna...skpeagaf...saiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                   +   +++ ++++   ++++++ +d + + +g   +  a  +NH+C + ++  +    + +r+++ A+r+I+ GeE+ti+Y
  CCE29265.1 604 --NalpFDNAPEQYygiFQTNCLPLDKKYDSWGI--FLKACRVNHDCANSAYNNWNE--NIKRYTLHALRNIRSGEEITISY 679
                 ..12223444555554555555557744333333..6699*******9888777777..9********************** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0  13.3   1.9e-11   4.8e-08       1      38 []     465     507 ..     465     507 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.9e-11
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg+   ae+ k+C+ C sv+YC+keCq+a w  k+Hk +C
  CCE29265.1 465 CHGCGTnaaAESMKRCSICFSVWYCNKECQTAGWttKTHKSDC 507
                 ******87777777********************6557***** PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0025       6.3       4      25 ..      22      44 ..      20      54 .. 0.83
   2 ?    1.3   0.0      0.22   5.6e+02       6      17 ..     139     150 ..     137     156 .. 0.80
   3 ?    3.5   0.0     0.045   1.2e+02       4      17 ..     548     562 ..     545     578 .. 0.80
   4 ?    0.0   0.0      0.53   1.3e+03       5      17 ..     664     676 ..     662     683 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0025
                EEESSTB-TT-BE.BTTTEEEEC CS
         SAF  4 vvAardikaGevi.teddltlkr 25
                +vA+r+i++G++i +e+ l ++ 
  CCE29265.1 22 LVANRNIPKGTRIiSEQALFTIP 44
                8************9777777665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.22
                 ESSTB-TT-BEB CS
         SAF   6 AardikaGevit 17 
                 A+rdi+ Ge+it
  CCE29265.1 139 AIRDIRSGEEIT 150
                 788888888886 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.045
                 EEESSTB-TT-BE.B CS
         SAF   4 vvAardikaGevi.t 17 
                 +v +r+i++G++i  
  CCE29265.1 548 LVTTRNIPKGTRIiA 562
                 7999********963 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.53
                 EESSTB-TT-BEB CS
         SAF   5 vAardikaGevit 17 
                  A+r+i+ Ge+it
  CCE29265.1 664 HALRNIRSGEEIT 676
                 4666677777665 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.2   0.00022      0.56      20      76 ..     213     269 ..     210     270 .. 0.92
   2 ?    3.3   0.0      0.04     1e+02      50      74 ..     769     793 ..     742     809 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00022
      TPR_12  20 deAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  eAl++++++l+ +++  G +  +   +  n + l+ + g+++ A+ +le+a a+a+
  CCE29265.1 213 LEALRCCRASLAFHNSEEGREDGDFTVAHGNAAKLFILYGDLARARFILEKAAAVAR 269
                 59************999888888888**************************99987 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.04
      TPR_12  50 nLgrlyralgryeeAlelleealai 74 
                 n ++++ + g+++ A+ + e+a a+
  CCE29265.1 769 NTATVFIMYGDLARARFFAEKAAAV 793
                 4455555555555555555555443 PP

>> MOSC  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2    0.0015       3.7      19      83 ..     124     187 ..     120     223 .. 0.83
   2 ?    6.6   0.1    0.0029       7.3      17      83 ..     648     713 ..     637     743 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0015
                 HHHHHHHHS..GGGGG-STTTT--SEEES-.......-TTT-BTT-E.EEETT............ CS
        MOSC  19 sldalneelkegrsveldpgrfreNivvggaaafeEdtwkelrigdrrfrlggacsRcqmvnvdq 83 
                  ++ +ne++k+++ ++++  r +e i+++  ++   ++ ++ +i+++ f ++++c+ c++++ + 
  CCE29265.1 124 AYNVWNENIKRQTTHAIRDIRSGEEITINYVSSLIKQKARQKTIQES-FGFTCSCRICSLPEAQS 187
                 6899*****88888**************999999*************.**********7766544 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0029
                 THHHHHHHHHS..GGGGG-STTTT--SEEES-.......-TTT-BTT-E.EEETT............ CS
        MOSC  17 resldalneelkegrsveldpgrfreNivvggaaafeEdtwkelrigdrrfrlggacsRcqmvnvdq 83 
                  + ++++ne++k+ + ++l+  r +e i+++  +  ++ + ++   +d+ f ++++c+ c++++ + 
  CCE29265.1 648 NSAYNNWNENIKRYTLHALRNIRSGEEITISYVSGLKDRKSRQTIFQDS-FGFTCSCRICSLPETES 713
                 6789*******76666**************8888888888888888888.**********9987665 PP

>> Stb3  Putative Sin3 binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0021       5.4      21      63 ..      30      72 ..      22      76 .. 0.85
   2 ?    2.9   0.0     0.043   1.1e+02      20      61 ..     555     596 ..     549     601 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0021
        Stb3 21 laiRhitaalttsvpgFsklspskaRRlvvaalegradkendv 63
                   R i ++   ++p +++ls   ++Rlv + +++ + +e+dv
  CCE29265.1 30 KGTRIISEQALFTIPDYENLSLEEKKRLVCQQFDALSRDEKDV 72
                5568899999999*******************99997777777 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.043
        Stb3  20 PlaiRhitaalttsvpgFsklspskaRRlvvaalegradken 61 
                 P   R i ++   ++pg++ l    ++R + + +++ +d++ 
  CCE29265.1 555 PKGTRIIAEQALFTIPGWDALNLEEQKRSICQQMDALSDDQR 596
                 55678899999999********************99866555 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0031       7.9     115     145 ..      19      49 ..      11      54 .. 0.90
   2 ?    4.0   0.0    0.0095        24     115     142 ..     545     572 ..     529     580 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0031
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 115 isGvVteknvreGqyvqpgdtlftiadlstV 145
                  +G+V ++n+ +G ++  +++lfti d++++
  CCE29265.1  19 GKGLVANRNIPKGTRIISEQALFTIPDYENL 49 
                 58************************99876 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0095
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 115 isGvVteknvreGqyvqpgdtlftiadl 142
                  +G+Vt++n+ +G ++ ++++lfti   
  CCE29265.1 545 GKGLVTTRNIPKGTRIIAEQALFTIPGW 572
                 68**********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5853.43
//
Query:       CCE29266.1  [L=502]
Description: uncharacterized protein CPUR_02959 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-12   46.5   0.3    7.1e-11   42.8   0.3    2.4  1  SET       SET domain
  ------ inclusion threshold ------
       0.13   12.9   0.0         29    5.4   0.0    3.0  2  SAF       SAF domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.3     8e-15   7.1e-11       1     168 [.      30     162 ..      30     163 .. 0.67

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 8e-15
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.........................HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.........................aylfslpeapknlaftkelakasastllqklakdqkqa 74 
                 G G++At++Ip+g+ i  ++e+++++  +   s++                          +                                     
  CCE29266.1  30 GKGLVATRHIPRGTRI--LAEKALISVPKGMYSGKRdelirqqvealtndqrdaflsmrniH------------------------------------- 89 
                 88**************..89999999999999998884444333322222222222222221..................................... PP

                 HHHHHHHTHHHHHHHXTTTSXXXHCCCCC.HCCCHEE..EETEEEEEECCC.....GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx..xxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  75 ekedtdaalkasskaesdlnaskpeagaf.saiagys..idaralksgnga.....gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeElt 165
                                            +f +++a++   i+++al++ ++      +  a  +NH+C++N+ +++ +  +  + +v A+rdI++GeE+t
  CCE29266.1  90 ---------------------------PFeNLPAQCLgiIQTNALPAQEYPdtqaiFLEACRINHDCQNNAVHQWNA--NIEQGTVHALRDIQPGEEIT 159
                 ...........................333444444444444444444444444444445***********999998..9******************* PP

                 EXT CS
                 xxx RF
         SET 166 idY 168
                 i+Y
  CCE29266.1 160 ISY 162
                 *** PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0    0.0093        83       4      16 ..      33      45 ..      22      56 .. 0.82
   2 ?    5.4   0.0    0.0033        29       4      17 ..     146     159 ..     144     168 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0093
                EEESSTB-TT-BE CS
         SAF  4 vvAardikaGevi 16
                +vA+r i++G++i
  CCE29266.1 33 LVATRHIPRGTRI 45
                7999999999998 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0033
                 EEESSTB-TT-BEB CS
         SAF   4 vvAardikaGevit 17 
                 v A+rdi++Ge+it
  CCE29266.1 146 VHALRDIQPGEEIT 159
                 6799*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3943.45
//
Query:       CCE29267.1  [L=535]
Description: uncharacterized protein CPUR_02960 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-11   42.5   0.2    5.5e-10   39.9   0.2    2.2  1  SET          SET domain
    2.9e-09   36.9  15.6    7.5e-09   35.5  15.6    1.8  1  zf-MYND      MYND finger
  ------ inclusion threshold ------
      0.018   15.6   0.0       0.65   10.7   0.0    2.4  2  SAF          SAF domain
       0.12   12.6   0.0       0.44   10.9   0.0    1.9  2  TPR_12       Tetratricopeptide repeat
       0.43   11.0   8.2      0.039   14.3   3.1    2.0  2  Rhodanese_C  Rhodanase C-terminal


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.2   1.5e-13   5.5e-10       1     168 [.      19     151 ..      19     152 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.5e-13
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.......HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.......aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesd 92 
                 G G++At+dIpkg+ i    e +++t   ++  + +       + l+ l+                                 +d+++           
  CCE29267.1  19 GKGLVATKDIPKGTRI--TSEQALFTISGYKTLGVKdqgrlirQQLDALS---------------------------------SDQRNTFMSL------ 76 
                 88**************..89999999999999999999965554444444.................................1111111111...... PP

                 TSXXXHCCCCCHCCCHEEEETEEEEEECCC.............GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  93 lnaskpeagafsaiagysidaralksgnga.............gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                      ++a         ++da+++++g  +             +  a   NH+C++N+ + + n    +r+++ A rdI+ GeE+t +Y
  CCE29267.1  77 -----HNAH-------PFDDAADQHYGIFStnclpldeiqagiFLEACRANHDCENNVVYGWNN--IIKRMTLHAMRDIRSGEEITASY 151
                 .....1222.......2266666666666677777777777777777999********888888..7*********************9 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5  15.6   2.1e-12   7.5e-09       1      38 []     462     504 ..     462     504 .. 0.85

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 2.1e-12
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cgk   a + k+C++C+sv+YC+keCq+a w  k+Hk +C
  CCE29267.1 462 CHGCGKnaaAVSMKRCGKCSSVWYCNKECQTAGWttKKHKSDC 504
                 ******75444555********************6447****9 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00018      0.65       4      22 ..      22      41 ..      20      53 .. 0.80
   2 ?    2.1   0.0     0.087   3.1e+02       6      19 ..     137     150 ..     133     159 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
                EEESSTB-TT-BE.BTTTEE CS
         SAF  4 vvAardikaGevi.teddlt 22
                +vA++di++G++i +e+ l 
  CCE29267.1 22 LVATKDIPKGTRItSEQALF 41
                8************6555555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.087
                 ESSTB-TT-BEBTT CS
         SAF   6 AardikaGevited 19 
                 A rdi+ Ge+it++
  CCE29267.1 137 AMRDIRSGEEITAS 150
                 67888899988875 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.44      19      75 ..     210     266 ..     206     268 .. 0.94
   2 ?   -2.1   0.0       1.3   4.8e+03      21      53 ..     447     479 ..     442     480 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
      TPR_12  19 ydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                  +eAl++++++l  +++ +G + p  a++  n ++ + + g+++ A+ + e+a a+ 
  CCE29267.1 210 PTEALRCFRASLMFHNSEHGREDPFFAQAHMNVATSFILHGDLARARFFAEKAAAVH 266
                 579**************************************************9875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
      TPR_12  21 eAlellekaleiarrllGpdhpltattlrnLgr 53 
                 + +++  + ++ +r+ +G+ + ++a ++   g 
  CCE29267.1 447 QIRRFSIRQRDNMRKCHGCGKNAAAVSMKRCGK 479
                 666677777888999999999999999998886 PP

>> Rhodanese_C  Rhodanase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2       4.6   1.7e+04      37      45 ..     114     122 ..     109     124 .. 0.62
   2 ?   14.3   3.1   1.1e-05     0.039      10      57 ..     450     496 ..     427     505 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.6
  Rhodanese_C  37 anedCnelv 45 
                  an+dC++ v
   CCE29267.1 114 ANHDCENNV 122
                  466777666 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.1e-05
  Rhodanese_C  10 Rlal.ksevvgkCieCgkpvdelrkrnCanedCnelvlvCeeCaeklkg 57 
                  R+++ + + + kC+ Cgk+   +++++C   +C     + +eC++   +
   CCE29267.1 450 RFSIrQRDNMRKCHGCGKNAAAVSMKRCG--KCSSVWYCNKECQTAGWT 496
                  55553445999*****************7..8***********987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4160.93
//
Query:       CCE29268.1  [L=492]
Description: uncharacterized protein CPUR_02961 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00015   21.8  10.2    0.00029   20.9  10.2    1.5  1  zf-MYND   MYND finger
     0.0029   18.0   0.6       0.03   14.7   0.6    2.3  1  SET       SET domain


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9  10.2   3.2e-08   0.00029       1      38 []     415     459 ..     415     459 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.2e-08
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCHH....HHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradwk....sHkteC 38 
                 C+ Cg+   + + k+C +C   +YC++eCq   ++    +H   C
  CCE29268.1 415 CHGCGRtsaEASMKRCDKCLLFWYCNSECQDVGRNtitkTHEDYC 459
                 ******86555555****************876642333466666 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.6   3.3e-06      0.03       1     143 [.      19     123 ..      19     140 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.3e-06
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH....HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele....aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdlna 95 
                 G G++At +Ipkg+ i  + e ++l   +a+k +++    + l+ l+                                +e++da l ++ ++ s +  
  CCE29268.1  19 GKGLIATTNIPKGTRI--LSE-KPLMVIPARKPVSYfsisQQLEALS--------------------------------EEQRDAFLSMKNVHPS-V-- 79 
                 88**************..564.6888888888885544444444444................................3333333333333322.2.. PP

                 XXHCCCCC....HCCCHEEEETEEEEEECCC.GTTGGGCEEXSSSSEEEEEEE CS
                 xxxxxxxx....xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
         SET  96 skpeagaf....saiagysidaralksgnga.gplarflNHsCdpNcnltvqn 143
                      g++    + ++ +++     ksg+ a +  a  +NH+C+ N ++++ +
  CCE29268.1  80 -----GDKiigiFRTNFLCLT----KSGDLAiFQEACRINHDCESNTFHYWND 123
                 .....2222224444444433....3333335555699*****9999777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3917.25
//
Query:       CCE29269.1  [L=531]
Description: uncharacterized protein CPUR_02962 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-12   45.7   0.0    2.2e-11   44.4   0.0    1.7  1  SET       SET domain
    4.1e-05   23.6  12.0    9.4e-05   22.4  12.0    1.7  1  zf-MYND   MYND finger
  ------ inclusion threshold ------
      0.056   14.1   0.0         22    5.8   0.0    2.7  3  SAF       SAF domain
       0.13   12.6   0.1        1.2    9.5   0.1    2.2  2  TPR_12    Tetratricopeptide repeat
       0.14   12.1   0.0       0.32   11.0   0.0    1.7  1  FIST_C    FIST C domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   6.2e-15   2.2e-11       1     168 [.      14     145 ..      14     146 .. 0.67

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 6.2e-15
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.....HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.....aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdln 94 
                 G Gv+A ++I kg+ i  + ee++++  +++++  +     + l+ l+                                 e++++a    ++a+s   
  CCE29269.1  14 GKGVVAARKISKGTRI--MSEEPLMRLPKNENNTMSplairYQLEALS---------------------------------EEQQDAFMSLHNAHS--- 74 
                 88**************..776666666666666655776643333344.................................333333333333333... PP

                 XXXHCCCCC.HCCCHEE...EETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxx.xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  95 askpeagaf.saiagys...idaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                  ++++++++ + + +++   +d  + +        a  +NH+Cd N+  ++ +  + +r +v  +rdI++GeE+ti+Y
  CCE29269.1  75 -FQHLPEQYvRIFQTNClpmDDVDEIAIFL----EAARINHDCDYNAGSSWND--NIKRHVVHVLRDIQPGEEITISY 145
                 .33666666644444444542233334444....4599*********999999..9********************** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4  12.0   2.6e-08   9.4e-05       1      38 []     459     501 ..     459     501 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.6e-08
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCHHH..HCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradwks..HkteC 38 
                 C+ C k   a   k+C++C+  +YC+k Cq   w++  H+  C
  CCE29269.1 459 CHGCYKnaaAATMKRCGRCSLYWYCNKLCQIVGWTTnaHQVNC 501
                 9*****75444444********************6446*9999 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011        38       4      17 ..      17      31 ..      15      39 .. 0.84
   2 ?    5.8   0.0    0.0061        22       3      17 ..     128     142 ..     126     150 .. 0.91
   3 ?   -2.8   0.0       2.9     1e+04      23      41 ..     218     244 ..     198     250 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.011
                EEESSTB-TT-BE.B CS
         SAF  4 vvAardikaGevi.t 17
                vvAar i++G++i +
  CCE29269.1 17 VVAARKISKGTRImS 31
                8***********953 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0061
                 EEEESSTB-TT-BEB CS
         SAF   3 VvvAardikaGevit 17 
                 Vv ++rdi++Ge+it
  CCE29269.1 128 VVHVLRDIQPGEEIT 142
                 899**********97 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.9
                 EECECGG.CCTSCCCGG.......HHH CS
         SAF  23 lkrpias.hkigllpia.......yge 41 
                 +++ +++ h+++ ++++       yg+
  CCE29269.1 218 WIELGREdHCSATAHSDamtlsitYGD 244
                 455566669999888876666666665 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00032       1.2      20      76 ..     205     260 ..     202     261 .. 0.90
   2 ?    0.2   0.0      0.27   9.7e+02      33      54 ..     456     477 ..     452     481 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00032
      TPR_12  20 deAlellekaleiarrllGpdhpltattlrnLgrlyr.algryeeAlelleealaiae 76 
                 +eAl +l++  +++ +l  +dh   ++t +  +++++   g+++ A+ + ++al +++
  CCE29269.1 205 HEALGYLHAQSRLWIELGREDH--CSATAHSDAMTLSiTYGDLARARVFAQKALSVYK 260
                 79***************99999..8888888899998466***************997 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.27
      TPR_12  33 arrllGpdhpltattlrnLgrl 54 
                 +++ +G+++ ++a+t+   gr+
  CCE29269.1 456 QEKCHGCYKNAAAATMKRCGRC 477
                 47779**************998 PP

>> FIST_C  FIST C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.8e-05      0.32      45      99 ..     126     178 ..      51     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.8e-05
      FIST_C  45 dgslaladdveeGqrlqlmlrdaealiedlerlleeaakegallfsCigRglgl...g 99 
                 ++ + + +d+++G+++++ + ++ +++++  ++l+++     + f C++R   l   +
  CCE29269.1 126 RHVVHVLRDIQPGEEITISYHTPVRTRDARLEALKKS-----FNFTCVCRLCSLpdeQ 178
                 7889999*********************666666555.....********55554431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4154.39
//
Query:       CCE29270.1  [L=565]
Description: uncharacterized protein CPUR_02963 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-11   45.1   0.3    5.9e-11   43.0   0.3    2.0  1  SET           SET domain
      3e-07   30.4  11.1    7.1e-07   29.2  11.1    1.7  1  zf-MYND       MYND finger
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.74    9.8   0.0    2.2  2  TPR_10        Tetratricopeptide repeat
        0.2   11.6   0.2       0.27   11.1   0.2    1.2  1  CTP_transf_3  Cytidylyltransferase
       0.23   11.3   1.1        0.4   10.5   1.1    1.3  1  Amastin       Amastin surface glycoprotein


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.3   1.6e-14   5.9e-11       1     168 [.      28     166 ..      28     167 .. 0.63

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.6e-14
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH......HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele......aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdl 93 
                 G G++At+++p+g+ i  ++e+ +l +  ad  ++       +  + l+                                    +++ +a+ ++++  
  CCE29270.1  28 GKGLIATRKLPRGTRI--IVER-PLISILADMDDGRrrrfirQQVEALS------------------------------------NDQRHAFLSMHNIH 87 
                 88**************..6654.44444444444444755663333333....................................22222222222222 PP

                 S..X........XXHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 x..x........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  94 n..a........skpeagafsaiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                    +        + ++a ++    +y +d+   +    a    + +NH+Cd+N+ +++ +  r ++ +v ++rdI +GeE+ti+Y
  CCE29270.1  88 RfdDvddqylgiFSTNALSTLDSVVYNDDQPRKAVFQEA----SRINHDCDNNALHEWNA--RIKQHTVHTIRDIDAGEEITISY 166
                 221022222223334444445555666777777777777....***********999999..*********************** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2  11.1     2e-10   7.1e-07       1      38 []     489     531 ..     489     531 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 2e-10
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg    a + k+C+ C s +YC+keCq   w  k Hk +C
  CCE29270.1 489 CHGCGVnapASSMKRCSMCFSFWYCNKECQATGWttKAHKIDC 531
                 9*****86666666********************5335****9 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.43   1.5e+03       1      16 [.     232     247 ..     232     250 .. 0.90
   2 ?    9.8   0.0   0.00021      0.74      18      40 ..     270     292 ..     267     294 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.43
      TPR_10   1 tAsslnNLanalrqrg 16 
                 t+  l+ L ++++++g
  CCE29270.1 232 TLGYLHSLVRLYSELG 247
                 7889*********988 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00021
      TPR_10  18 ydeAealleealairrrllGpdH 40 
                  ++A+ +  +al+++++++G+dH
  CCE29270.1 270 AARARLFSLKALSVWEKVVGADH 292
                 5667777789************* PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   7.6e-05      0.27     108     200 ..      65     173 ..      61     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.6e-05
                   HHHHHHHHHHSTTS............SEEEEEEETTSHHHHTSTTSTEEEETTTSBEEEEESSESSEEHHHHHCTSTTTSEEEEEEEEEEHH....H CS
  CTP_transf_3 108 ikkaietlkenqed............ylstlvkkvgkeeevlnandlkvllddagkalyfeesvipyireeplelsrrlylshagiytfrke....q 188
                   i++++e+l + q              +++     +++  ++ + +++  ++d++ ka ++e s i ++ ++++  ++++++++ ++ t r+     +
    CCE29270.1  65 IRQQVEALSNDQRHaflsmhnihrfdDVDDQYLGIFSTNALSTLDSVVYNDDQPRKAVFQEASRINHDCDNNALHEWNARIKQHTVHTIRDIdageE 161
                   677788888887778888888888889999999*********************************************************9855555 PP

                   HHHHHHHSHHHH CS
  CTP_transf_3 189 plkelvidtpts 200
                   + + +v + +++
    CCE29270.1 162 ITISYVELLEKR 173
                   555555555554 PP

>> Amastin  Amastin surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.1   0.00011       0.4      24      59 ..     501     535 ..     493     537 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
     Amastin  24 ske.saciTlWglkedcdsvsytlrtselwkeCprrr 59 
                 +k+ s+c+ +W  +++c+ + +t++ +++  +C+ +r
  CCE29270.1 501 MKRcSMCFSFWYCNKECQATGWTTKAHKI--DCKFLR 535
                 445699***********************..9*9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 4448.70
//
Query:       CCE29271.1  [L=233]
Description: uncharacterized protein CPUR_02964 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1785.85
//
Query:       CCE29272.1  [L=1315]
Description: uncharacterized protein CPUR_02965 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-31  107.1   0.0    1.4e-30  105.6   0.0    1.9  1  RT_RNaseH    RNase H-like domain found in reverse transcripta
    1.2e-29  102.3   0.0    2.8e-29  101.1   0.0    1.7  1  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
    2.7e-22   79.4   0.0      5e-22   78.5   0.0    1.4  1  RVT_1        Reverse transcriptase (RNA-dependent DNA polymer
    2.7e-10   40.5   0.1    6.8e-10   39.2   0.1    1.6  1  rve          Integrase core domain
  ------ inclusion threshold ------
      0.044   14.0   0.1       0.11   12.8   0.1    1.6  1  MutS_I       MutS domain I
        3.3    8.6   4.8          5    8.0   0.0    3.2  2  AIM5         Altered inheritance of mitochondria 5


Domain annotation for each model (and alignments):
>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.0   4.7e-34   1.4e-30       1     105 []     694     800 ..     694     800 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 4.7e-34
                 -TTS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--.EEEE-SS--TTTTT----.---HHH CS
   RT_RNaseH   1 dpskpfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqg.rk.ftvitDhknlkyllskkslngrlar 97 
                 d + ++++e D+s +g+g+v+sq  +d+  rp+ f+Srkl++ae ny++++kell+i+ ++k+fr  l++ rk ft+++Dh+nl+y+++++ l++r+ r
  CCE29272.1 694 DLDLETVVEADSSGYGLGGVVSQVGQDDLLRPVGFYSRKLTAAEINYQIHDKELLSIISTIKHFRGELRScRKkFTILSDHRNLQYFMTTRMLSERQVR 792
                 67899*****************************************************************9778************************* PP

                 HHHHC-XX CS
   RT_RNaseH  98 WaleLsey 105
                 Wa+eLs y
  CCE29272.1 793 WAEELSYY 800
                 *****988 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   0.0   9.3e-33   2.8e-29       1     100 []     669     770 ..     669     770 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.1 bits;  conditional E-value: 9.3e-33
  RT_RNaseH_2   1 WteeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAivwalkkfrhyllg..r 96 
                  W+e +++af+++ke l+ apvLa++d d+++++e D+S +g+g+v sq ++d+ +rp++f+Srkl++ae ny++++kell+i+ ++k+fr  l +  +
   CCE29272.1 669 WDEVHQTAFDRMKEILICAPVLAMYDLDLETVVEADSSGYGLGGVVSQVGQDDLLRPVGFYSRKLTAAEINYQIHDKELLSIISTIKHFRGELRScrK 766
                  ***************************************************999************************************99998777 PP

  RT_RNaseH_2  97 kftv 100
                  kft+
   CCE29272.1 767 KFTI 770
                  7775 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   1.7e-25     5e-22      15     222 .]     453     605 ..     449     605 .. 0.96

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 1.7e-25
                 ...-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET............... CS
       RVT_1  15 lsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrs 113
                 +s+ y+ ln++++k         + +++p +r+              l++ +ka +++klD++ aF++ +++   + + +f+++               
  CCE29272.1 453 VSTTYRGLNAITSK---------DRYPLPLIRET-------------LRQLAKALHMTKLDVRAAFHRMRMALGEEWKSSFRTR--------------- 514
                 57899*********.........***********.............999**********************************............... PP

                 ..........TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE..... CS
       RVT_1 114 fsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililsks.keelqelleaveewlkesglkinpeKtklvlftvk 211
                            g ye+ ++p+G++ +P+ f++ +n +l +       v++++Y+DD++i++++ + ++ + ++ v +++  +gl i  +K+ +      
  CCE29272.1 515 ----------LGAYEWLVCPFGLTGAPAHFQRWINAVLGDALD----VFCSAYMDDVTIYTDGdEADHFAKVNLVLSRMLAAGLIIDLAKCAFN----- 594
                 ..........79******************************8....9***************6666***************************..... PP

                 ESSEEETTEEE CS
       RVT_1 212 seevkyLGvtl 222
                  ++vkyLG+++
  CCE29272.1 595 VTQVKYLGFIV 605
                 8*******975 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.1   2.3e-13   6.8e-10       8     115 ..     957    1063 ..     951    1065 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 2.3e-13
         rve    8 wqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpq 103 
                  + +D++ +++  + g+  +l v+ d   + ++ ea+ ++ da++++++  +  +rf+g  p +++sD+g  +t + +r++++  gi+++++ + +pq
  CCE29272.1  957 IAIDFMtELPAENDGDPRFLMVISDRLLHSVTLEAMITM-DAEACAKVFVNSHWRFHGF-PAALTSDRGFNWTGRFWRRLCHLVGIEQRLSTAFHPQ 1051
                  567888788877777788999999999999999999999.******************8.************************************* PP

         rve  104 dnGkvErfhrtl 115 
                  + G  Er ++ +
  CCE29272.1 1052 TDGATERWNQEV 1063
                  ********9976 PP

>> MutS_I  MutS domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   3.6e-05      0.11      30      75 ..     308     353 ..     304     362 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.6e-05
                 ECHHHHHHHHHCSSSSTT.ESSSSC.EEEEEEEHHHHHHHHHHHHH CS
      MutS_I  30 fgeDAviaareleitltkrkkssekeipmagvPehalekylrkLve 75 
                 + +DA++++  l + lt+r +++++ ++ ++v+ + ++k l+kL e
  CCE29272.1 308 HIRDATVVSARLFKALTERAHRRKEVMQLCSVSISDINKALDKLAE 353
                 789**************998766666***************99976 PP

>> AIM5  Altered inheritance of mitochondria 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   2.3       1.2   3.5e+03       9      28 ..     874     894 ..     866     917 .. 0.57
   2 ?    8.0   0.0    0.0017         5      39      61 .]    1053    1078 ..    1041    1078 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.2
        AIM5   9 svlnslidP.lppgppparae 28 
                 ++l++  +P lp++pppa  +
  CCE29272.1 874 AALRASTSPsLPQPPPPAPDT 894
                 455555554355555553322 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0017
        AIM5   39 EtaKdrWNeEvegavrw...aqetDW 61  
                  + a +rWN+Ev +  r      +tDW
  CCE29272.1 1053 DGATERWNQEVLAVLRAfisYSQTDW 1078
                  66779********9998544455666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.42
# Mc/sec: 9427.59
//
Query:       CCE29273.1  [L=556]
Description: uncharacterized protein CPUR_02966 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-13   51.3   0.4      9e-13   48.9   0.4    2.1  1  SET       SET domain
    4.7e-08   33.0  13.1    1.2e-07   31.6  13.1    1.8  1  zf-MYND   MYND finger
  ------ inclusion threshold ------
       0.16   12.7   0.0         26    5.5   0.0    2.8  2  SAF       SAF domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.4   1.5e-16     9e-13       1     168 [.      19     157 ..      19     158 .. 0.65

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.5e-16
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.....HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.....aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdln 94 
                 G G++At+++pkg+ i  ++e++++t      +e       +  + l+                                 ed+++a    ++ ++   
  CCE29273.1  19 GKGLVATRKLPKGTRI--IAERPLITMPSEMDEEARrkfilQEVNALS---------------------------------EDQRRAFLSLHNIHRF-- 80 
                 88**************..786666665555555555575554444444.................................2222222222222211.. PP

                 XXXHCCCCCHCCCHEEEETEEEEEECCC.....................GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  95 askpeagafsaiagysidaralksgnga.....................gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                                 +d ++++ g ++                     +  a+ +NH+C++N+++++ n  + +r +v A+rdI +GeE+t++Y
  CCE29273.1  81 ----------------DDDADQYLGIWStnalqitkfnglqdgqgregiFLEASRINHDCENNAFYHWNN--NIKRHTVHAIRDIDAGEEITLSY 157
                 ................3334444444444445555555555555666666677***********999999..9********************** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6  13.1   2.1e-11   1.2e-07       1      38 []     480     522 ..     480     522 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 2.1e-11
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg    a + k+C++C s +YC+keCq a w  k Hk +C
  CCE29273.1 480 CHGCGVkapAASMKRCSRCFSFWYCNKECQAAGWttKAHKVDC 522
                 9****986555566********************5445***** PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.017     1e+02       4      17 ..      22      37 ..      20      45 .. 0.80
   2 ?    5.5   0.0    0.0043        26       4      18 ..     141     155 ..     140     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.017
                EEESSTB-TT-BE..B CS
         SAF  4 vvAardikaGevi..t 17
                +vA+r +++G++i  +
  CCE29273.1 22 LVATRKLPKGTRIiaE 37
                79*********99544 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0043
                 EEESSTB-TT-BEBT CS
         SAF   4 vvAardikaGevite 18 
                 v A+rdi aGe+it 
  CCE29273.1 141 VHAIRDIDAGEEITL 155
                 679**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3727.41
//
Query:       CCE29274.1  [L=173]
Description: uncharacterized protein CPUR_02967 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 1220.26
//
Query:       CCE29275.1  [L=1005]
Description: uncharacterized protein CPUR_02968 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-22   78.1   4.4    8.7e-11   42.5   0.7    3.4  2  SET       SET domain
    8.8e-07   28.9   8.6    2.7e-06   27.4   8.6    1.9  1  zf-MYND   MYND finger
    0.00065   20.3   0.0         14    6.4   0.0    4.4  4  SAF       SAF domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.7   1.5e-14   8.7e-11       1     168 [.      30     162 ..      30     163 .. 0.69
   2 !   34.9   0.2   3.1e-12   1.8e-08       1     168 [.     477     609 ..     477     610 .. 0.67

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1.5e-14
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.....HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.....aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdln 94 
                 G G++At++Ip+g+ i  + e++++t  + +  e+      + ++sl+                                 +d+++a    ++a+    
  CCE29275.1  30 GKGLVATRKIPRGTRI--LSEKPVFTMPTGKTMEERqnlicQQMDSLS---------------------------------NDQRNAFLSMHNAHL--- 90 
                 88**************..888888888888887777877887777777.................................111111111111111... PP

                 XXXHCCCCC.HCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  95 askpeagaf.saiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                  ++  a+++   ++++++ a +++   +++  a  +NH+Cd+N+ + +    + +r +v A+rdI++GeE+t++Y
  CCE29275.1  91 -FNDAAEQYiGIFRTNCLPADEFPDKAAIFLEACRINHDCDNNAIHNWNE--KIKRHTVQAIRDIEEGEEITLSY 162
                 .22334444444444443333444444447788***********888888..9********************** PP

  == domain 2  score: 34.9 bits;  conditional E-value: 3.1e-12
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.....HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.....aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdln 94 
                 G G++At++Ipkg+ i  ++e ++++  +    e       ++ + l+                                  d+++a     +++    
  CCE29275.1 477 GKGLVATRNIPKGTRI--IAEQPLFSMSQHPDDEIRrrtilQLVKALS---------------------------------YDQRRAFLSLTNCHP--- 537
                 88**************..887777777777766666777775555555.................................222222222333333... PP

                 XXXHCCCCC.HCCCHEE....EETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxx.xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  95 askpeagaf.saiagys....idaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                  s+++a+++   ++ ++    +d +  +    a      +NH Cd N+ +++ +  r +  +v A rdI  GeE+t+ Y
  CCE29275.1 538 -SNNTAYQYlGTFSANAlplgDDDNKYAIFLEA----CRINHACDSNAVHYWND--RIKLGTVHAMRDIHSGEEITLIY 609
                 .33555555422222223444555666666666....***********666666..99999***************999 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   8.6   4.5e-10   2.7e-06       1      38 []     929     971 ..     929     971 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 4.5e-10
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C  Cg+   a + k+C+ C s +YC+k+Cq   w  k Hk +C
  CCE29275.1 929 CGGCGTsvtAASMKRCSMCLSFWYCNKDCQMVGWvtKAHKDDC 971
                 88999988777777********************8667****9 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.015        91       4      17 ..      33      47 ..      30      72 .. 0.79
   2 ?    3.2   0.0     0.023   1.4e+02       5      23 ..     147     165 ..     145     172 .. 0.81
   3 !    6.4   0.0    0.0023        14       4      26 ..     480     504 ..     477     514 .. 0.78
   4 ?   -0.1   0.0      0.26   1.5e+03       5      18 ..     594     607 ..     592     624 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.015
                EEESSTB-TT-BE.B CS
         SAF  4 vvAardikaGevi.t 17
                +vA+r i++G++i +
  CCE29275.1 33 LVATRKIPRGTRIlS 47
                89*********9952 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.023
                 EESSTB-TT-BEBTTTEEE CS
         SAF   5 vAardikaGeviteddltl 23 
                  A+rdi+ Ge+it + ++l
  CCE29275.1 147 QAIRDIEEGEEITLSYVSL 165
                 699*********9876655 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0023
                 EEESSTB-TT-BE..BTTTEEEECE CS
         SAF   4 vvAardikaGevi..teddltlkrp 26 
                 +vA+r+i++G++i  +++  ++ ++
  CCE29275.1 480 LVATRNIPKGTRIiaEQPLFSMSQH 504
                 89**********9776666555555 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.26
                 EESSTB-TT-BEBT CS
         SAF   5 vAardikaGevite 18 
                  A rdi  Ge+it 
  CCE29275.1 594 HAMRDIHSGEEITL 607
                 6889******9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1005 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 6867.22
//
Query:       CCE29276.1  [L=151]
Description: uncharacterized protein CPUR_02969 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1183.96
//
Query:       CCE29277.1  [L=596]
Description: uncharacterized protein CPUR_02970 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-12   46.8   0.3    2.4e-11   44.3   0.3    2.2  1  SET       SET domain
    1.3e-08   34.8  11.9    3.7e-08   33.3  11.9    1.8  1  zf-MYND   MYND finger
  ------ inclusion threshold ------
      0.041   14.5   0.0        5.7    7.6   0.0    2.5  2  SAF       SAF domain
          6    6.7   6.1        1.4    8.8   2.1    1.8  2  Amastin   Amastin surface glycoprotein


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.3   5.4e-15   2.4e-11       1     168 [.      19     158 ..      19     159 .. 0.65

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 5.4e-15
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH............................HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele............................aylfslpeapknlaftkelakasastllqklakdq 71 
                 G G++At++Ipkg+ i  ++ee+++t  + ++ ++                             a+                                 
  CCE29277.1  19 GKGLVATRHIPKGTRI--LCEEPLFTIPNVRNAKEGlrlirqqvaslsndqrqdylsmrnihtdAF--------------------------------- 82 
                 88**************..998888888777777766877763333333332222222222222111................................. PP

                 HHHHHHHHHHTHHHHHHHXTTTSXXXHCCCCC.HCCCHEEEETEEEEEECCC.......GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  72 kqaekedtdaalkasskaesdlnaskpeagaf.saiagysidaralksgnga.......gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGe 162
                                           + ++++ +++ag ++  ++l++g+         +  a  +NH+C+ N+ + +   ++ +r +v A rdI++Ge
  CCE29277.1  83 --------------------------NDGWDTaEGYAGIFLT-NCLPAGGFPiehtkgiFLEACRINHDCKYNALYDWN--DNIKRHTVHAVRDINAGE 152
                 ..........................1222223333333333.45555555566666778899***********55555..59**************** PP

                 EEEEXT CS
                 xxxxxx RF
         SET 163 EltidY 168
                 E+t++Y
  CCE29277.1 153 EITVSY 158
                 ****** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3  11.9   8.3e-12   3.7e-08       1      38 []     520     562 ..     520     562 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 8.3e-12
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCHH..HHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradwk..sHkteC 38 
                 C+ Cgk   a + k+C+ C s +YC++eCq+a w+  sHk +C
  CCE29277.1 520 CHGCGKnavASSMKRCGMCLSFWYCNRECQTAGWTtrSHKADC 562
                 ******77666667********************6336****9 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.019        86       4      17 ..      22      37 ..      18      63 .. 0.75
   2 ?    7.6   0.0    0.0013       5.7       4      17 ..     142     155 ..     141     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.019
                EEESSTB-TT-BE..B CS
         SAF  4 vvAardikaGevi..t 17
                +vA+r i++G++i  +
  CCE29277.1 22 LVATRHIPKGTRIlcE 37
                7999999999999653 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0013
                 EEESSTB-TT-BEB CS
         SAF   4 vvAardikaGevit 17 
                 v A+rdi+aGe+it
  CCE29277.1 142 VHAVRDINAGEEIT 155
                 679**********8 PP

>> Amastin  Amastin surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.66   2.9e+03     107     127 ..     471     491 ..     467     500 .. 0.68
   2 ?    8.8   2.1   0.00031       1.4      24      59 ..     532     566 ..     524     569 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.66
     Amastin 107 tllivwalmvavyykrfCdal 127
                   +  w l + + y+++C ++
  CCE29277.1 471 AKFLFWLLLIECCYQPVCRKI 491
                 445667777777777777654 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00031
     Amastin  24 ske.saciTlWglkedcdsvsytlrtselwkeCprrr 59 
                 +k+  +c+ +W  +++c++  +t+r+++   +C+ +r
  CCE29277.1 532 MKRcGMCLSFWYCNRECQTAGWTTRSHKA--DCKFLR 566
                 444689***********************..**9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 4646.53
//
Query:       CCE29278.1  [L=477]
Description: uncharacterized protein CPUR_02971 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-08   34.5  13.9    3.5e-08   33.4  13.9    1.6  1  zf-MYND   MYND finger
    1.6e-07   31.9   0.1    3.7e-07   30.7   0.1    1.6  1  SET       SET domain


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4  13.9     4e-12   3.5e-08       1      38 []     401     443 ..     401     443 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 4e-12
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg+   a + k C+ C+s +YCsk+Cqr  w  k Hk +C
  CCE29278.1 401 CHGCGTeapAASMKSCSMCSSFWYCSKQCQRTGWttKAHKVDC 443
                 ******86555556********************5445***** PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1   4.2e-11   3.7e-07     126     168 ..      38      78 ..       3      79 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 4.2e-11
                 GGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 126 arflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                 a  +NH+Cd+N+ +++++  + +r +v A r+I +GeE+t++Y
  CCE29278.1  38 ACRINHDCDNNALHHWSD--KVKRHVVHAVREIDAGEEITLTY 78 
                 578*********999999..9********************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3563.84
//
Query:       CCE29279.1  [L=364]
Description: uncharacterized protein CPUR_02972 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2696.97
//
Query:       CCE29280.1  [L=547]
Description: uncharacterized protein CPUR_02973 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-11   42.4   1.2    3.9e-10   40.4   1.2    2.0  1  SET       SET domain
    2.5e-08   33.9  13.0    6.2e-08   32.6  13.0    1.8  1  zf-MYND   MYND finger


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   1.2   4.4e-14   3.9e-10       1     168 [.      30     162 ..      30     163 .. 0.71

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 4.4e-14
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.....HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.....aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdln 94 
                 G G++At++Ip+g+ i  + e++i+t  + +  e+      + ++sl+                                    +++ ka+ ++++   
  CCE29280.1  30 GKGLIATRNIPRGTRI--LSEKPIITMPTGKTMEERrrlicQQMDSLS------------------------------------NDQRKAFLSMHNAHL 90 
                 88**************..899999999999999988998888888887....................................222222222222221 PP

                 XXXHCCCCC.HCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  95 askpeagaf.saiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                  ++   +++   ++++++ a++++   +++  a  +NH+Cd+N  +++    + +r +v + rdI+++eE+t++Y
  CCE29280.1  91 -FNDAVEQYiGIFRTNCLPAEEFPDKAAIFLEACRINHDCDNNSLHHWNE--KIKRHTVHTMRDIEADEEITLSY 162
                 .11222222333344444444444444447788***********899998..9********************** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6  13.0   6.9e-12   6.2e-08       1      38 []     486     528 ..     486     528 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 6.9e-12
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg+   a + k C+ C+s +YC+keCqr  w  k Hk +C
  CCE29280.1 486 CHGCGTeapAASMKACSMCSSFWYCNKECQRTGWttKAHKVDC 528
                 ******86555556********************5445***** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3827.15
//
Query:       CCE29281.1  [L=546]
Description: uncharacterized protein CPUR_02974 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-11   43.3   0.5    2.4e-10   41.1   0.5    2.0  1  SET       SET domain
      3e-08   33.6  12.4      3e-08   33.6  12.4    2.2  2  zf-MYND   MYND finger
  ------ inclusion threshold ------
       0.11   13.1   0.0         12    6.6   0.1    2.9  3  SAF       SAF domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.5     4e-14   2.4e-10       3     168 ..      21     151 ..      20     152 .. 0.69

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 4e-14
                 EEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.....HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   3 GvfAtedIpkgeficeypeeiiltkdeadksele.....aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdlnas 96 
                 G++At+ Ip+g+ i  ++e++++t  +  + e+      + l sl+                            +q+  ++++++++ + ++e++    
  CCE29281.1  21 GLVATRYIPQGTRI--LCEKPLFTIPNVMELEKRhrlicQQLASLS---------------------------NEQRQVFQSMHNIHPFDDTEERD--- 87 
                 9*************..887777776666666666788886666666...........................44555555555555555555544... PP

                 XHCCCCC.HCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  97 kpeagaf.saiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                   +  ++ s++ag +  +++++     +  a  +NH+C+ N+ + +    + +r +v A rdI kGeE+t++Y
  CCE29281.1  88 -IGIFETnSMPAGGT--PADRAI----FLEACRINHDCKSNAIYDWNT--HIKRNTVHAVRDIDKGEEITVSY 151
                 .33333334444433..334444....5555***********666666..9********************** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4       1.4   8.3e+03      12      17 ..     174     179 ..     166     188 .. 0.77
   2 !   33.6  12.4     5e-12     3e-08       1      38 []     470     512 ..     470     512 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.4
                 E-TTTS CS
     zf-MYND  12 kCagCk 17 
                 +C+ C+
  CCE29281.1 174 RCSLCS 179
                 788885 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 5e-12
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg+   a + k+C++C s +YC++eCq+a w  k Hk +C
  CCE29281.1 470 CHGCGNnavASSMKRCGRCLSFWYCNRECQTAGWttKAHKADC 512
                 ******76666667********************5335****9 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.028   1.6e+02      40      55 ..      17      32 ..       5      41 .. 0.71
   2 ?    6.6   0.1     0.002        12       2      18 ..     133     149 ..     132     158 .. 0.87
   3 ?   -4.0   0.0         3   1.8e+04      39      45 ..     366     372 ..     353     377 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.028
                HHHTTEEESS-B-TT- CS
         SAF 40 geviGkratrdikaGe 55
                g + G +atr i+ G+
  CCE29281.1 17 GKAKGLVATRYIPQGT 32
                6666666666666664 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.002
                 EEEEESSTB-TT-BEBT CS
         SAF   2 nVvvAardikaGevite 18 
                 n v A+rdi +Ge+it 
  CCE29281.1 133 NTVHAVRDIDKGEEITV 149
                 8899***********85 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 3
                 HHHHTTE CS
         SAF  39 ygeviGk 45 
                 +ge++G 
  CCE29281.1 366 LGEIVGT 372
                 8999994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3920.13
//
Query:       CCE29282.1  [L=484]
Description: uncharacterized protein CPUR_02975 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-10   41.5   0.2    4.4e-09   36.9   0.2    2.4  1  SET       SET domain
  ------ inclusion threshold ------
       0.03   14.4   1.0      0.089   12.9   1.0    1.9  1  zf-MYND   MYND finger


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.2   4.9e-13   4.4e-09       1     168 [.      19     151 ..      19     152 .. 0.59

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 4.9e-13
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.......................HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.......................aylfslpeapknlaftkelakasastllqklakdqkqaek 76 
                 G G++A + Ipkg+ i++ p+ i l  + a +++ +                       +                                       
  CCE29282.1  19 GKGLIAIKTIPKGTQILSEPPLIKLPVAVALEHQRSsichqlealsddqrdgflslsniH--------------------------------------- 78 
                 789*************87665555555555555555555333322222233333222221....................................... PP

                 HHHHHTHHHHHHHXTTTSXXXHCCCCC.HCCCHEEEE.TEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  77 edtdaalkasskaesdlnaskpeagaf.saiagysid.aralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                          + +ae+      +  g f  +    + d + +   +      a  +NH+Cd+N+ lt  n ++ ++v+v A+rdI  GeE+ti+Y
  CCE29282.1  79 --------PFNDAEE------QYLGIFlTNALP-VTDaQGTATISLE----ACRINHDCDNNA-LTNLN-SEITQVMVHAIRDIDIGEEITISY 151
                 ........2222222......223333211111.2331333344444....49**********.55555.69********************** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.0     1e-05     0.089      24      38 .]     436     450 ..     435     450 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
                 HHHHHHCHHHHCCCH CS
     zf-MYND  24 keCqradwksHkteC 38 
                 keCq+  w++Hk +C
  CCE29282.1 436 KECQKTGWTTHKVDC 450
                 79************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3376.35
//
Query:       CCE29283.1  [L=550]
Description: uncharacterized protein CPUR_02976 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-13   49.4   0.8    1.5e-11   44.9   0.8    2.4  1  SET       SET domain
    2.1e-07   30.9  11.7    2.1e-07   30.9  11.7    1.9  2  zf-MYND   MYND finger
     0.0031   18.1   0.0        4.8    7.9   0.0    2.7  2  SAF       SAF domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.8   2.6e-15   1.5e-11       3     168 ..      21     154 ..      20     155 .. 0.61

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 2.6e-15
                 EEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.........HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   3 GvfAtedIpkgeficeypeeiiltkdeadksele.........aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesd 92 
                 G++At++Ipkg+ i  ++ee+++t       + e         a+   l+                                    +++  a+ ++++ 
  CCE29283.1  21 GLVATRNIPKGTRI--ICEEPLFTIPIVPDFQRErfrlislqvAL---LN------------------------------------NDQRDAFLSMHNI 78 
                 9*************..77544444444444443344445443311...11....................................2333333333333 PP

                 TSX...XXHCCCCC...HCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxx...xxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  93 lna...skpeagaf...saiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                 ++     ++  g f   s++ag s  ++++  g +    a  lNH+C+ N+++++ +  + +r++v A+rdI++GeE+t++Y
  CCE29283.1  79 YPPrdpVEGYVGIFetnSLPAGQS--QTTQTRGIYL--EACRLNHDCQYNATYSWNP--SIKRITVHAIRDINAGEEITVSY 154
                 332233333333333445555555..3344444444..679**********888888..*********************** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.4       1.6   9.7e+03      12      17 ..     177     182 ..     170     187 .. 0.78
   2 !   30.9  11.7   3.5e-11   2.1e-07       1      38 []     474     516 ..     474     516 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.6
                 E-TTTS CS
     zf-MYND  12 kCagCk 17 
                 +C+ C+
  CCE29283.1 177 RCSLCS 182
                 788885 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 3.5e-11
                 -TTT--....B-SC...E-TTTS-SEESSHHHHHHCHHH..HCCCH CS
     zf-MYND   1 CavCgk...aealk...kCagCksvfYCskeCqradwks..HkteC 38 
                 C+ Cgk   a   +   +C++C s +YC keCq a w++  Hk +C
  CCE29283.1 474 CHGCGKnaaA---SsmrRCGKCLSFRYCTKECQMAGWTTkgHKGDC 516
                 ******5433...3466********************5445**999 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0013         8       4      16 ..      22      34 ..       4      71 .. 0.76
   2 !    7.9   0.0    0.0008       4.8       4      18 ..     138     152 ..     137     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0013
                EEESSTB-TT-BE CS
         SAF  4 vvAardikaGevi 16
                +vA+r+i++G++i
  CCE29283.1 22 LVATRNIPKGTRI 34
                6777777777777 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0008
                 EEESSTB-TT-BEBT CS
         SAF   4 vvAardikaGevite 18 
                 v A+rdi+aGe+it 
  CCE29283.1 138 VHAIRDINAGEEITV 152
                 679**********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3952.60
//
Query:       CCE29284.1  [L=592]
Description: uncharacterized protein CPUR_02977 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-14   52.1   0.3    2.2e-13   50.9   0.3    1.6  1  SET       SET domain
    5.9e-07   29.5  11.0    1.3e-06   28.4  11.0    1.6  1  zf-MYND   MYND finger
     0.0012   19.4   0.1        4.2    8.1   0.0    3.2  4  SAF       SAF domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.3   3.7e-17   2.2e-13       1     168 [.      19     195 ..      19     196 .. 0.75

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 3.7e-17
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.......HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.......aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesd 92 
                 G G++At++Ip+g+ i  + e +++t  ++ +se+              +               ++s   +++    ++a+++d+++  ++ ++ esd
  CCE29284.1  19 GKGLVATRNIPRGTRI--LSEQPLITLPTDINSEKGgrsirrqL-----K---------------ALSVDKRRAFLLLHNAHQFDYMDYDNMYYSYESD 95 
                 88**************..78777888888888887787555442.....4...............4455567777778999999999999999999999 PP

                 TS...........X...............XXHCCCCC.HCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEE CS
                 xx...........x...............xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  93 ln...........a...............skpeagaf.saiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEl 164
                  +           +                + e+    + ++++s+++  +k g+  +  a  +N +Cd+N+ +++ +  + +r +v A+rdI++GeEl
  CCE29284.1  96 DAyesdysddiidMyenyirnkdatdildDDWEQCIGiFSTNVLSMNEGNRKQGGI-FLEACRINYDCDNNVMHYWND--ETKRQTVHAIRDINAGEEL 191
                 98666655554441555666666655554333333336788888888666666665.7999***********888888..9****************** PP

                 EEXT CS
                 xxxx RF
         SET 165 tidY 168
                 t++Y
  CCE29284.1 192 TMSY 195
                 **** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4  11.0   2.1e-10   1.3e-06       1      38 []     516     558 ..     516     558 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 2.1e-10
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg+   a + k+C++C s +YC k Cq a w  k Hk +C
  CCE29284.1 516 CHGCGTdaaATSMKRCGKCLSFWYCTKVCQIAGWttKAHKGDC 558
                 ******75444455********************5335**999 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0007       4.2       4      27 ..      22      47 ..      20      62 .. 0.79
   2 !    7.4   0.0    0.0012       6.9       4      17 ..     179     192 ..     176     198 .. 0.87
   3 ?   -3.3   0.0       2.4   1.4e+04      46      55 ..     365     374 ..     364     374 .. 0.67
   4 ?   -3.3   0.0       2.5   1.5e+04      38      45 ..     406     418 ..     388     420 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0007
                EEESSTB-TT-BE..BTTTEEEECEC CS
         SAF  4 vvAardikaGevi..teddltlkrpi 27
                +vA+r+i++G++i  +++ +tl  +i
  CCE29284.1 22 LVATRNIPRGTRIlsEQPLITLPTDI 47
                8************9877777765555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0012
                 EEESSTB-TT-BEB CS
         SAF   4 vvAardikaGevit 17 
                 v A+rdi+aGe++t
  CCE29284.1 179 VHAIRDINAGEELT 192
                 78**********97 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.4
                 EESS-B-TT- CS
         SAF  46 ratrdikaGe 55 
                 r++r i++G+
  CCE29284.1 365 RVKRQIPKGQ 374
                 6777777775 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 2.5
                 G.....HHHHTTE CS
         SAF  38 a.....ygeviGk 45 
                 +     +ge+iG+
  CCE29284.1 406 KrhyclLGEIIGS 418
                 1456678999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4250.90
//
Query:       CCE29285.1  [L=581]
Description: uncharacterized protein CPUR_02978 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-12   48.0   0.4      5e-12   46.5   0.4    1.8  1  SET          SET domain
    8.5e-08   32.2  12.9    1.8e-07   31.1  12.9    1.6  1  zf-MYND      MYND finger
  ------ inclusion threshold ------
      0.027   14.3   0.1      0.083   12.8   0.0    1.9  2  TPR_10       Tetratricopeptide repeat
       0.04   14.5   0.0         15    6.3   0.0    2.6  2  SAF          SAF domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.4   1.1e-15     5e-12       1     168 [.      19     187 ..      19     188 .. 0.59

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 1.1e-15
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.........................................HTEEEEEXGGXXGGSXHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................................xxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.........................................aylfslpeapknlaftkelaka 58 
                 G+G++At++Ipkg+ i+   e  ++ + +ad  +++                                         + ++++                
  CCE29285.1  19 GMGLVATRNIPKGTRIL--SEQ-PFITLPADIDFGQgrrsicrqlkelsidqrraflllhnvhryddmddsddmddaYDMNDCH--------------- 99 
                 89**************5..442.3333444444444466666554444444456555555554222222222222211111111............... PP

                 HTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSXXXHCCCCCHCCCHEE..EETEEEEEECCC......GTTGGGCEEXSSSSEEEEEEEETTSSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  59 sastllqklakdqkqaekedtdaalkasskaesdlnaskpeagafsaiagys..idaralksgnga......gplarflNHsCdpNcnltvqnvlrgpr 149
                  +  ++++++                            + +++ ++ + ++   + ++al+++ g+      +  a  +NH+C+ N+ +++ +  + +r
  CCE29285.1 100 -SDDMGKTDN---------------------------KDDTDNMKDVWDQCLgiFGTNALPMTVGEqkkagiFLEACRINHDCEGNAIHYWND--KIKR 168
                 .122222222...........................233333334455554555566666666667777777789***********888888..9*** PP

                 EEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxxxxx RF
         SET 150 vavfAtrdIkkGeEltidY 168
                  +v A+rdI +GeE+t++Y
  CCE29285.1 169 HTVHAIRDIDAGEEITLSY 187
                 ******************* PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1  12.9     4e-11   1.8e-07       1      38 []     505     547 ..     505     547 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 4e-11
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg+   a + k+C++C s +YC keCq a w  k Hk +C
  CCE29285.1 505 CHGCGTnatASSMKRCGKCLSFWYCTKECQMAGWtaKAHKDDC 547
                 ******76555566********************6557****9 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       3.6   1.6e+04       9      17 ..     257     265 ..     257     265 .. 0.65
   2 ?   12.8   0.0   1.8e-05     0.083       8      41 ..     280     310 ..     273     311 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3.6
      TPR_10   9 analrqrgr 17 
                 a++++++gr
  CCE29285.1 257 ARIYSELGR 265
                 567777776 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.8e-05
      TPR_10   8 LanalrqrgrydeAealleealairrrllGpdHP 41 
                 La+a+   g++++A+ ++e+a+ i+  ++G+d+P
  CCE29285.1 280 LAIAH---GDLARARVFAERAVIIWTTACGRDSP 310
                 55555...9************************9 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0034        15       4      16 ..      22      34 ..      20      60 .. 0.86
   2 ?    5.3   0.0     0.007        31       4      18 ..     171     185 ..     170     188 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0034
                EEESSTB-TT-BE CS
         SAF  4 vvAardikaGevi 16
                +vA+r+i++G++i
  CCE29285.1 22 LVATRNIPKGTRI 34
                79*********99 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.007
                 EEESSTB-TT-BEBT CS
         SAF   4 vvAardikaGevite 18 
                 v A+rdi aGe+it 
  CCE29285.1 171 VHAIRDIDAGEEITL 185
                 679**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4163.44
//
Query:       CCE29286.1  [L=508]
Description: uncharacterized protein CPUR_02979 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-17   61.9   0.1    1.8e-16   61.0   0.1    1.5  1  SET       SET domain
    1.2e-06   28.5  13.1    1.2e-06   28.5  13.1    2.1  2  zf-MYND   MYND finger
     0.0062   17.1   0.1        3.8    8.2   0.0    2.5  2  SAF       SAF domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.1     3e-20   1.8e-16       1     168 [.      19     167 ..      19     168 .. 0.73

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 3e-20
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.....HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.....aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdln 94 
                 G G++At++Ipkg+ i  + e +++t  ++  +e+        l+ l+         ++++ a +s      + d +   k ++++++k++ + + d+ 
  CCE29286.1  19 GKGLVATRNIPKGTRI--LSEQPLITIPTDLDHEEGrrsicRQLEALS---------NDQRRAFLSLHNAYPCNDMEDSDKTKDADKVKDAAEQYLDI- 105
                 88**************..787778888888888877897773333344.........55555555555555566666677777777777777666666. PP

                 XXXHCCCCCHCCCHEEEETEEEEEECCC......GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  95 askpeagafsaiagysidaralksgnga......gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                                 + ++al++ +        +p++  +NH+C+ N+++t+ +  +  r +v A+rdI +GeE+t++Y
  CCE29286.1 106 ----------------FSTNALPMCEDDqdngsiFPMGCRINHDCESNAAHTWNA--GIHRHTVHAIRDIDAGEEITLSY 167
                 ................2222222222222222359********************..*********************** PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   1.0         3   1.8e+04       1       5 [.     191     195 ..     189     200 .. 0.68
   2 !   28.5  13.1     2e-10   1.2e-06       1      38 []     432     474 ..     432     474 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 3
                 -TTT- CS
     zf-MYND   1 CavCg 5  
                 C+vC 
  CCE29286.1 191 CRVCS 195
                 55564 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 2e-10
                 -TTT--....B-SCE-TTTS-SEESSHHHHHHCH..HHHCCCH CS
     zf-MYND   1 CavCgk...aealkkCagCksvfYCskeCqradw..ksHkteC 38 
                 C+ Cg    a++ k+C++C s +YC+keCq   w  k Hk +C
  CCE29286.1 432 CHGCGAhvaARSMKRCGKCLSFWYCNKECQMTGWtaKAHKGDC 474
                 ******77666666********************6557**999 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00064       3.8       4      24 ..      22      43 ..      19      56 .. 0.75
   2 !    6.2   0.0    0.0028        17       4      19 ..     151     166 ..     150     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00064
                EEESSTB-TT-BE.BTTTEEEE CS
         SAF  4 vvAardikaGevi.teddltlk 24
                +vA+r+i++G++i +e+ l ++
  CCE29286.1 22 LVATRNIPKGTRIlSEQPLITI 43
                8************855555555 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0028
                 EEESSTB-TT-BEBTT CS
         SAF   4 vvAardikaGevited 19 
                 v A+rdi aGe+it +
  CCE29286.1 151 VHAIRDIDAGEEITLS 166
                 679**********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3966.05
//
Query:       CCE29287.1  [L=739]
Description: treB neutral trehalase (alpha,alpha-trehalose glucohydrolase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.3e-192  640.4   0.0   2.8e-192  640.1   0.0    1.1  1  Trehalase        Trehalase
    2.8e-15   55.7   0.8    4.8e-15   55.0   0.8    1.4  1  Trehalase_Ca-bi  Neutral trehalase Ca2+ binding domain


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  640.1   0.0  3.2e-196  2.8e-192       1     512 []     141     705 ..     141     705 .. 0.97

  Alignments for each domain:
  == domain 1  score: 640.1 bits;  conditional E-value: 3.2e-196
                 CCTTSTCCCCCGCCTS-..HHHHHHHHHCHHCCHHEE..TTTTHHHHHHHHCE-SGGGS.EE.E-TT-HHHHHHHHHHH.CTGGHH.EECCHHCCTTC. CS
   Trehalase   1 klfgdkktfvDearlse..vdrllrlikaslekaltrridkedlkkfvedtfeetgseleri.vpkdekeqpeyflkka.edeelrleaeelnklwka. 94 
                 k++g+k++++De rl+e  vdrl+rli++++++ ltrrid+++++ +++d +++t+++++ri vp+ ++eq+ey++k+a +++e+rl+++ l++++++ 
  CCE29287.1 141 KEYGRKQIILDEGRLNEnpVDRLSRLIRDHFWDGLTRRIDASSIEIAARDPKDWTDDPRPRIyVPYGAPEQYEYYKKVAeARPEIRLDVQLLPEKITPe 239
                 689***************************************************************************999****************99 PP

                 CCCHTTTS-SCE-TTECEEE-TT.........-EE-SBTTB-S-BCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHSS--SBSBGGGTT---S--H CS
   Trehalase  95 lvrkikkkvgllpeassllplpk.........pfvVPGgRFrElYyWDsYfvilGLleskkvdlakgmvenfiyliekYGkilNgnRsYYlsRSQPPll 184
                 l+r++++k+gll+ ++++++++          pfvVPGgRF+ElY+WDsY+++lGLl++++vdlak+mv nf+++ie+YGkilN++RsYYl RSQPP+l
  CCE29287.1 240 LIRDMNEKPGLLAVETEQVIDAItgektlrglPFVVPGGRFNELYGWDSYMESLGLLVNDRVDLAKSMVLNFCFCIEHYGKILNATRSYYLGRSQPPFL 338
                 *****************9999988999************************************************************************ PP

                 HHHHHHHHHHC.....HCCHHHHHHHHHHHHHHHCCTTTCCETTCCC-CTC-EEE--SSSTTS-TCCCHHHHHHHHHCTT...HCCHHHHHCCCCHHHH CS
   Trehalase 185 tdmvlrvyekt.....eddallravlaalkkeyefwmaeqrldevtklskryllnrygvpeetprpesyledketaeklk...kerkkeevyrelkaaa 275
                 tdm+lrvyek+     + ++l+ra+laa+k+++++w+ e+rld+ t+ls ry+++++gvp+et+++++ ++++++ +k++   ke+ ++++y+e+++++
  CCE29287.1 339 TDMALRVYEKIkhepdAEEFLRRAILAAIKEYHSVWTCEPRLDAATGLS-RYRPEGLGVPPETEATHFVHILEPYIKKYNmefKEFVRAYNYGEIHEPE 436
                 ***************9999******************************.******************************99999************** PP

                 HCCHHCHHHHCCCCTT-S.TCCCCTGGGEE-HHHHHHHHHHHHHHH.....HCCCHCC-..............CCHHHHHHHHHHHHHHHHHHHCEETT CS
   Trehalase 276 esgwdlssRwlresghdtgellelrtaklvpvDLNallyklekdia.....efedklgd..............setseefeekaekrkkaidkvLWnee 355
                 ++++++++R++resghdt++++e  +a+l+++DLN+ll+k+e+dia      f+d+l                  ts+ ++++a++rk ++dk +W+ee
  CCE29287.1 437 LDEYFMHDRAVRESGHDTTYRFEGICADLATIDLNSLLFKYETDIArtirgVFKDRLVIpaafcdrtpyqagqVLTSAVWDRRAKRRKLTVDKLMWDEE 535
                 **********************************************97777555555558888888888999899************************ PP

                 TTEE--EETTTTEE----BGGGGHHHHCT-S-HHHHHHHHHHCHHHHCCCCCEES..CCCC-SBSSS.-SSTTSTTEEEHHHHHHHHHHHHHTT-HHHH CS
   Trehalase 356 agvylDYdlkkkkqtnyesatnlvpLwaglaskeqaaklvakvlekleesgllva..egglgtsllk.sgrQWDyPngWaPlqilaveglerygeeela 451
                 +gv++DYd+ k++++nyes t++++Lwag+as+ qaa++v+k l+++e++g+l a  e+++g ++l+ ++rQWDyP+gWaP+q+la++gl ry+ +e+a
  CCE29287.1 536 QGVFFDYDTAKRERCNYESSTTFWALWAGIASPAQAAAMVEKGLPRFEAYGGLLAgtEKSRGSIGLErPNRQWDYPYGWAPQQMLAWTGLLRYSFTEEA 634
                 ******************************************************999****************************************** PP

                 HHHHHHHHHHHHHHHHHC.TSEBSCEETTS.......TSTTB..TT-SSSSTTCSBHHHHHHHHHHHCCH. CS
   Trehalase 452 erlaerwlktvtkafsde.gklvEKYdvtr.......eaeyg..GgggeyvlqeGFGWvNgvvlelLellg 512
                 erla++wl+++tkaf+d+ g++vEKYdvtr       +aeyg  G+++++v++eGFGWvN++++++L+ ++
  CCE29287.1 635 ERLAYKWLFMITKAFVDYnGVVVEKYDVTRpadphrvDAEYGnqGLDFKGVAKEGFGWVNASYVYGLQIVN 705
                 *************************************9*****************************9875 PP

>> Trehalase_Ca-bi  Neutral trehalase Ca2+ binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.8   5.3e-19   4.8e-15       1      30 []      84     113 ..      84     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 5.3e-19
  Trehalase_Ca-bi   1 LeqLLeqEDTDgnfQITIeDkGPKvlsLGT 30 
                      L++L++qEDTDgn+QIT++D+G Kv+sL+T
       CCE29287.1  84 LDNLQAQEDTDGNMQITVDDEGTKVFSLRT 113
                      799*************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 5859.33
//
Query:       CCE29288.1  [L=549]
Description: probable isocitrate lyase (acu-3) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.2e-287  952.5   0.1   5.9e-287  952.3   0.1    1.0  1  ICL         Isocitrate lyase family
    1.5e-10   41.0   0.2    3.1e-10   39.9   0.2    1.5  1  PEP_mutase  Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> ICL  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  952.3   0.1  6.5e-291  5.9e-287       1     526 []      23     548 ..      23     548 .. 0.98

  Alignments for each domain:
  == domain 1  score: 952.3 bits;  conditional E-value: 6.5e-291
                 HHHXHHHHHTSGGGGG---SS-HHHHHHH--SS----THHHHHHHHHHHHHHHHHHT--EEEEB--SHHHHHHHHHH-S-EEE-HHHHHHH--TT---- CS
         ICL   1 evaevkkwwsdsrwrktkrvysaedivskrGnlkieyasseqakklfklleeheaektasktfGaldpvqvtqmakyldtiyvsGwqssstastsneps 99 
                 ev++vk ww+dsrwr tkr+++ae+ivskrG l++eyas++qakkl+ +lee++++k+as+t+G+l+p+++tqmakyldt+yvsGwqssstas+s+ep+
  CCE29288.1  23 EVEQVKTWWRDSRWRFTKRPFTAEQIVSKRGHLQVEYASNVQAKKLWGILEERFKNKDASYTYGCLEPTMLTQMAKYLDTVYVSGWQSSSTASSSDEPG 121
                 79************************************************************************************************* PP

                 SS-S-S-TTHHHHHHHHHHHHHHHHHHHHHHHHHSS-HHHHTTS--------EEEE-TT-SSSHHHHHHHHHHHHHTT-SEEEE-SB-TT--------- CS
         ICL 100 pdladypmdtvpnkvehlflaqlfhdrkqkeerlkvkkeereklanvdylrpiiadadtGhGGltavvkltklfierGaaGihiedqasgtkkcGhmaG 198
                 pdladyp++tvpnkv hlf+aqlfhdrkq++er+++++++r+ +anvdylrpiiadadtGhGGltav+kltklfie+GaaGihiedqa+gtkkcGhmaG
  CCE29288.1 122 PDLADYPYTTVPNKVGHLFMAQLFHDRKQRQERISTPRDQRAAIANVDYLRPIIADADTGHGGLTAVMKLTKLFIEKGAAGIHIEDQAPGTKKCGHMAG 220
                 *************************************************************************************************** PP

                 EEE--HHHHHHHHHHHHHHHHHTT---EEEEE--GGGEEEES-TT-GGGGGGEEEE--TTS--HHHHHHHHHHS---SHHHHHHHHHHHHHS-EE-SHH CS
         ICL 199 kvlvpiqehinrlvairaqadilgsdllvvartdseaatlitstidtrdhafilGatnpdleeladllveaeaeGksGaelqaiedewlkkaglklfee 297
                 kvlvp +ehi rlvairaqadi+gsdl++vartd+eaatl+t+tid rdhafilG+tnp l++l++l+++ae++Gk G +lq +ed+wl+ a+l+lf++
  CCE29288.1 221 KVLVPTSEHISRLVAIRAQADIMGSDLIAVARTDAEAATLLTTTIDPRDHAFILGSTNPSLQPLNELMTAAEKAGKVGPDLQRVEDDWLASANLQLFND 319
                 *************************************************************************************************** PP

                 HHHHHHHTSS...-S-HHHHHHHHHHHHTT--HH...HHHHHHHHHHSS----BTTSS--TT--EEE--SHHHHHHHHHHHTTS-SEEE---SS--HHH CS
         ICL 298 avvdeieksk...lsnkkelikkftkkvkplselsnkearklakellgkdiffdwelprvreGyyrykGgtqcsvvravafapyadliwmesklpdyaq 393
                 av+ +i+++      +k +l  +f ++++     s+ ear+la+ ll+ diffdw++pr+reGyyr++Gg+ c++ ra+++ap++d++wmesklpdyaq
  CCE29288.1 320 AVLSAIDRAPgisPREKPNLKTQFVDQAH---GKSHLEARALARTLLSADIFFDWDAPRTREGYYRLQGGCACAISRAISYAPFCDAVWMESKLPDYAQ 415
                 ********984323445555556665555...66777************************************************************** PP

                 HHHHHHHHHTT-TT-EEEEE--SSS-GGGTS-HHHHHSHHHHHHHTTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTHHHHHHHT-GGGSHH CS
         ICL 394 akefaeGvkakvpeqklaynlspsfnwkkamsadeqetyikrlaklGyvwqfitlaGlhtnalisdkfakdyakrGmkaygeevqeeeidnGvdvvkhq 492
                 ak faeGv+a +peqklaynlspsfnwk+ams  eqetyi+rla+lGy+wqfitlaGlht+alisd+fa+++a++Gm+ayge vqe+e+  Gvdvvkhq
  CCE29288.1 416 AKAFAEGVHAHWPEQKLAYNLSPSFNWKTAMSPGEQETYIQRLAALGYCWQFITLAGLHTTALISDQFARAFAQDGMRAYGELVQEPEMVLGVDVVKHQ 514
                 *************************************************************************************************** PP

                 HHHTHHHHHHHHHHHH--XXXXXXXXXXXXXXXX CS
         ICL 493 kwsGaeyidellklvtGGvsstaamGkGvtedqf 526
                 kwsGa y+del+k+vtGGvsstaamGkGvtedqf
  CCE29288.1 515 KWSGAAYVDELQKMVTGGVSSTAAMGKGVTEDQF 548
                 *********************************9 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.2   3.5e-14   3.1e-10      69     146 ..     169     255 ..     143     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 3.5e-14
  PEP_mutase  69 s..lPlivDledGygespeevaetvrrliaaGvvgvniEDk.....kknd.aerqlldieefaekiaaaraaaeeag..fvinARtda 146
                 +   P+i+D+++G+g     v +  + +i+ G++g++iED+     k++  a++ l++  e+ +++ a+ra+a+  g  ++ +ARtda
  CCE29288.1 169 DylRPIIADADTGHGG-LTAVMKLTKLFIEKGAAGIHIEDQapgtkKCGHmAGKVLVPTSEHISRLVAIRAQADIMGsdLIAVARTDA 255
                 3447**********99.999*********************9987544455888889*****************99999********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3929.78
//
Query:       CCE29289.1  [L=734]
Description: probable serine/threonine protein kinase (SNF1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-75  253.7   0.0    2.9e-75  253.0   0.0    1.3  1  Pkinase          Protein kinase domain
      1e-37  129.8   0.0    1.6e-37  129.2   0.0    1.3  1  Pkinase_Tyr      Protein tyrosine kinase
    7.2e-19   68.4   0.5    9.8e-10   38.9   0.0    3.3  3  AdenylateSensor  Adenylate sensor of SNF1-like protein kinase
    1.8e-15   56.7   0.1    3.7e-15   55.8   0.1    1.6  1  UBA_2            Ubiquitin associated domain (UBA)
    2.2e-05   23.9   0.0    5.6e-05   22.6   0.0    1.7  2  Kinase-like      Kinase-like
     0.0012   18.5   0.1     0.0027   17.3   0.1    1.5  1  RIO1             RIO1 family
     0.0048   15.8   0.1     0.0078   15.1   0.1    1.2  1  YukC             WXG100 protein secretion system (Wss), prote
      0.007   15.3   0.2      0.016   14.2   0.2    1.7  1  Haspin_kinase    Haspin like kinase domain
  ------ inclusion threshold ------
        0.3   11.0   4.1       0.31   10.9   0.4    2.7  3  APH              Phosphotransferase enzyme family
        2.7    7.1   8.5        6.4    5.9   8.5    1.7  1  Med3             Mediator complex subunit 3 fungal


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.0   0.0   1.6e-78   2.9e-75       1     264 []      70     321 ..      70     321 .. 0.94

  Alignments for each domain:
  == domain 1  score: 253.0 bits;  conditional E-value: 1.6e-78
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 y+ +++lGeGsfGkV  a+++ tg++vA+K+i+++k  +++   +v rEi++l+ l+hp+i++ly v+++++e+++vley+  gel+d++ ++g ++e 
  CCE29289.1  70 YKIVRTLGEGSFGKVRLAIHQGTGQQVALKIIARKKLISRDMaGRVEREIEYLQLLRHPHIIKLYTVIKTQTEIIMVLEYAA-GELFDYIVQNGRMKEP 167
                 78899***************************999988877779*************************************9.66************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkpp 196
                 ea+++++q+l ++ey+H+++i+HrDlKpeN+L+d++ ++Ki+DFGl++ ++ ++ l++ +g+++Y APEv++++ y +++vDvWs+G+ily ll g+ p
  CCE29289.1 168 EARRFFQQMLCAVEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVIGGKLYaGPEVDVWSCGIILYVLLVGRLP 266
                 ***********************************************************************999999********************** PP

                 TTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 197 fsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 f +e+  + ++k+++              ++  +  +s+ a +l+kk+l ++p +R+t+ee+ q+p++
  CCE29289.1 267 FDDEHIPSLFAKIARG-------------TYSIPPWMSSGAENLIKKMLVVNPVQRVTIEEIRQDPWF 321
                 **66666655555555.............45566668******************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.0   9.1e-41   1.6e-37       3     257 ..      72     317 ..      70     318 .. 0.89

  Alignments for each domain:
  == domain 1  score: 129.2 bits;  conditional E-value: 9.1e-41
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  + ++lGeG+fGkV  +  +     + ++Va+K++  k+  +++   ++ +e++ ++ l+hp+i+kl+ v+  + ++++v+ey+  G+L +++ ++   
   CCE29289.1  72 IVRTLGEGSFGKVRLAIHQ----GTGQQVALKIIarKKLISRDMAGRVEREIEYLQLLRHPHIIKLYTVIKTQTEIIMVLEYA-AGELFDYIVQN--G 162
                  6799************999....89999*****94334455666888999********************************7.69********9..9 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHHHHHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkft.sksDvWsfGvll 195
                  +++  +  +f +q+ +++ey +++k+vHrdl   N Ll++n  vki+DfGL++ + +d +   k+++  + ++ apE++  k +   + DvWs G++l
   CCE29289.1 163 RMKEPEARRFFQQMLCAVEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIM-TDGNFL-KTSC-GSPNYAAPEVIGGKLYAgPEVDVWSCGIIL 257
                  9***************************************************987.444444.4444.4569**********986369********** PP

                  HHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 196 wEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  + ++  g+ p+ + +  ++++k+ +g+  + p  +++   +l+kk +  +p +R t++e+++
   CCE29289.1 258 YVLLV-GRLPFDDEHIPSLFAKIARGTY-SIPPWMSSGAENLIKKMLVVNPVQRVTIEEIRQ 317
                  *8887.********99999***999875.566679999********************9976 PP

>> AdenylateSensor  Adenylate sensor of SNF1-like protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.5e-08   2.6e-05       1      36 [.     536     571 ..     536     592 .. 0.90
   2 ?    0.9   0.0      0.35   6.2e+02      37      53 ..     626     642 ..     617     649 .. 0.78
   3 !   38.9   0.0   5.4e-13   9.8e-10      58     117 .]     676     730 ..     660     730 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.5e-08
                      SEEESEEEES-HHHHHHHHHHHHHHTTEEE-----G CS
  AdenylateSensor   1 rWhfGirsrsypldvlgeiyralknlGaewakPsee 36 
                      rW fGirsr  p + l  i++al++lGa+++  +e+
       CCE29289.1 536 RWQFGIRSRNAPWEALLCIHKALHKLGAKYILDEEQ 571
                      8*****************************977665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.35
                      GGGEEEEEEE-HHHHHT CS
  AdenylateSensor  37 elwtikvrwkykkaeke 53 
                      + w ikvrw+ ++ e++
       CCE29289.1 626 DPWHIKVRWEASTLEQH 642
                      569******99877665 PP

  == domain 3  score: 38.9 bits;  conditional E-value: 5.4e-13
                      EEEEEEEEEEEETTEEEEEEEEEEEEESSSSSTTTTTSSTTS---STTHHHHHHHHHHHH CS
  AdenylateSensor  58 lmkleiqlfqlepnnylvdfkfdGwessssekeetaeededevssayPflhlatrlilel 117
                         + iq++++ep  +lvdfk  G+e+  ++       +e+ev+s +Pfl++++rli++l
       CCE29289.1 676 ALLMDIQIYEMEPGVFLVDFKCAGYETPDGR-----VLEEKEVTSPFPFLDMTARLIMQL 730
                      4469**********************97655.....34567899**************97 PP

>> UBA_2  Ubiquitin associated domain (UBA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.1   2.1e-18   3.7e-15       1      46 []     364     405 ..     364     405 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 2.1e-18
       UBA_2   1 IdedvvsaLsktMGYdkdeIieaLekaekskssneIkDAYlLmkEN 46 
                 ++++v +++sktMGY + ++ eaL+++e+s    +IkDAY++++EN
  CCE29289.1 364 LHNEVTEKISKTMGYGRTDVEEALQSDEPS----AIKDAYMIVREN 405
                 599***************************....***********9 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.7     3e+03      14      53 ..      70     109 ..      63     127 .. 0.76
   2 !   22.6   0.0   3.1e-08   5.6e-05     152     253 ..     175     270 ..     140     309 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.7
  Kinase-like  14 lvrgellkkgdrsvvfevkdqetgeplavkvfllpseask 53 
                  ++ +  l++g +++v ++  q tg+++a+k+   ++  s+
   CCE29289.1  70 YKIVRTLGEGSFGKVRLAIHQGTGQQVALKIIARKKLISR 109
                  5667889999999999999999999999998776665555 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 3.1e-08
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllldekgglmlggf..taLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclk 247
                  q++  + + + + +vh +++++nllld +  +++ +f  ++++++g+  + s     +a pE++g         k+    ++d+W  G+  y +    
   CCE29289.1 175 QMLCAVEYCHRHKIVHRDLKPENLLLDDNLNVKIADFglSNIMTDGNFLKTSCGSPNYAAPEVIGG--------KLYAGPEVDVWSCGIILYVLLVGR 264
                  56667889999************************9844689******9999999**********9........4556789***************** PP

  Kinase-like 248 lPltla 253
                  lP++  
   CCE29289.1 265 LPFDDE 270
                  ***864 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.5e-06    0.0027      54     150 ..     114     212 ..      68     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHHHHHTT.--S--EEEEETTEE.EEE--EETTEEGGBHHHCG.-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE- CS
        RIO1  54 waekEfrnLkrleeag.vpvPkpielkrhvl.vmefigedgvaapklkdve.e.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviI 147
                  +e+E+++L+ l++ + ++  ++i+ + +++ v+e+    g     + +   + e ea++ ++++l +++    ++++vH DL   N+l+d++ +v i 
  CCE29289.1 114 RVEREIEYLQLLRHPHiIKLYTVIKTQTEIImVLEYAA--GELFDYIVQNGrMkEPEARRFFQQMLCAVEYCH-RHKIVHRDLKPENLLLDDNlNVKIA 209
                 4799******99987769999***99988753788888..4444444444434499***********877666.*******************999999 PP

                 -GT CS
        RIO1 148 Dvs 150
                 D++
  CCE29289.1 210 DFG 212
                 986 PP

>> YukC  WXG100 protein secretion system (Wss), protein YukC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   4.4e-06    0.0078      54     108 ..     164     219 ..     112     225 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.4e-06
                 GS-HHHHHHHHHHGGGGGG.GGGSSEE---SGGGEEE-TTS-EEES--EETTTBS- CS
        YukC  54 kkekkeklrlalnikalee.llssrltlilhPeNlvfdknlepkilhrgvkeslpp 108
                  ke +++ ++ + + a+e  + ++ ++  l+PeNl++d+nl++ki+  g+ +++ +
  CCE29289.1 164 MKEPEARRFFQQMLCAVEYcHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTD 219
                 334444544555577776515566789************************99865 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   8.9e-06     0.016     219     257 ..     179     217 ..      62     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.9e-06
  Haspin_kinase 219 LyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                      +   + +  HRdL+ +n L+d+nlnv + d+ ls + 
     CCE29289.1 179 AVEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIM 217
                    33444678889**********************999875 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.68   1.2e+03      21      83 ..      94     156 ..      85     179 .. 0.60
   2 ?   10.9   0.4   0.00017      0.31     166     196 ..     186     214 ..     168     218 .. 0.79
   3 ?   -1.9   0.1       1.4   2.5e+03      32      56 ..     571     595 ..     556     646 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.68
                 --EEEEEE-TT.....S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-S CS
         APH  21 gryvlrrnppa.....raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsll 83 
                 ++++l++++ +     + a +++re ++l+lL+   + +   v+     ++ei     ++ey  g+ ++
  CCE29289.1  94 QQVALKIIARKklisrDMAGRVEREIEYLQLLRHPHIiKLYTVIK---TQTEII---MVLEYAAGELFD 156
                 45666664444444467788999********99655534444444...455555...466666665555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00017
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 + ++H+Dl+p Nll+d++ +    + Df+++
  CCE29289.1 186 HKIVHRDLKPENLLLDDNLNVK--IADFGLS 214
                 568*************444444..7777765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
                 S-HHHHHHHHHHHHHHHHTT-B--B CS
         APH  32 raaeeirrevallrlLakagvpvPe 56 
                 +a++++++e++  ++ +++++ +P+
  CCE29289.1 571 QAHAQAEAEAEAQAQAQDQEIETPQ 595
                 3566666666666666666666655 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   8.5    0.0036       6.4     207     244 ..     573     614 ..     453     677 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0036
        Med3 207 kaaakaaakaqaqaqaqaqaqqq....vlanpnqvqtPiaan 244
                  a+a+a+a+aqaqaq q  +  q    +    +q q Pi++ 
  CCE29289.1 573 HAQAEAEAEAQAQAQDQEIETPQgdesLDDYDDQSQDPIPTS 614
                 2344444444444444444333355534445559999*9994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 5113.72
//
Query:       CCE29290.1  [L=208]
Description: uncharacterized protein CPUR_02983 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1574.39
//
Query:       CCE29291.1  [L=811]
Description: related to DNA directed DNA polymerase II chain B [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-64  217.3   0.0    2.1e-64  216.8   0.0    1.3  1  DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B


Domain annotation for each model (and alignments):
>> DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.8   0.0   1.2e-68   2.1e-64       2     210 ..     472     770 ..     471     771 .. 0.99

  Alignments for each domain:
  == domain 1  score: 216.8 bits;  conditional E-value: 1.2e-68
                  EEEES--S-TT----HHHHHHHHHHH...HTT--SEEEEES-SSBTTSHHHHHT---S--SSHHHHHHHHTHHHHTTS-TTSEEEEE--TTBTT-S.. CS
  DNA_pol_E_B   2 vivsglnldndnrsleaLrkiLqgya..peesppdvlilaGnfvdaahkaiasskvstdekkenfdalalllsilesllekttvvlvPgpnDpans.. 95 
                  vi+++lnld ++r l+a+r iL++ya  pe+s p +++l+Gnf+++a++a+++s++s +e+ke fdala+ ls++++ll++ t+v+vPg+nD+++s  
   CCE29291.1 472 VIIGELNLD-QPRALQAMRRILSLYAaePEGSAPLTFVLTGNFTQHAVMAHGGSGGS-IEYKEYFDALASALSDFPTLLQSSTFVFVPGDNDGWVSsf 567
                  89*******.********************************************996.**************************************** PP

                  .....-SBSB----TTTTT--TTT..................EEE--BSEEEEET..TEEEEE--S-HHHH---EEESHHHH................ CS
  DNA_pol_E_B  96 .....tvlPqqPlprlllsrikrvfk...............elklvtNPsrieln..svevvltsddivkdlkreslkesnt................ 155
                       ++lP++P+p++++sri+rvf+               ++++++NPsri+l+  ++e+vl++ddi+++l+r+ +  +++                
   CCE29291.1 568 tagasVPLPRKPIPDMFTSRIRRVFAaanaeagshraavpgSAVWTSNPSRITLFgpNHELVLFRDDISARLRRAAVPMKKKkpsganadsaaaegge 665
                  *******************************************************99*********************99999*************** PP

                  .................................................HS-HHHHHHHHHHHHTBS---SS--B-GGGGGGGB-GGG---SEEE--- CS
  DNA_pol_E_B 156 .................................................dverlrklvktildqrhlaPlaptlrpvswdkddalvleplPdvlvlpd 204
                                                                   dv  ++klvktildq++laP+++++rpv+wd++ al l+plP+++vl+d
   CCE29291.1 666 satienadsqddaqdqvhgepmdldpdpvsndaeeeaaastekaipgedDVRTAQKLVKTILDQGYLAPFRQSIRPVHWDYSPALHLYPLPTAMVLVD 763
                  ************************************************************************************************** PP

                  .SS--EE CS
  DNA_pol_E_B 205 .elpeFa 210
                   ++p+F+
   CCE29291.1 764 tTAPPFC 770
                  ******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 6041.75
//
Query:       CCE29292.1  [L=1076]
Description: uncharacterized protein CPUR_02985 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-26   93.4   8.0    1.1e-26   93.4   8.0    2.7  2  FUSC_2           Fusaric acid resistance protein-like
    0.00022   19.9   0.5    0.00022   19.9   0.5    3.1  4  FUSC             Fusaric acid resistance protein family
  ------ inclusion threshold ------
       0.18   10.4   0.0        1.6    7.3   0.0    2.3  3  UxaE             tagaturonate epimerase
        0.4   10.9   2.9        1.8    8.9   0.0    3.5  4  Phage_holin_Dp1  Putative phage holin Dp-1
        0.6    9.1   7.2        4.1    6.4   1.3    2.7  2  FUSC-like        FUSC-like inner membrane protein yccS
        1.8    8.7   6.4         12    6.0   0.1    3.6  3  DUF2456          Protein of unknown function (DUF2456)


Domain annotation for each model (and alignments):
>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   8.4       2.8   8.4e+03       6     117 ..      94     222 ..      86     236 .. 0.57
   2 !   93.4   8.0   3.8e-30   1.1e-26       8     127 .]     677     813 ..     662     813 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.8
      FUSC_2   6 aellglwrgeWalitaaivlsp..tlgasltravqRilGtvlGavlalllly...........llpgn.lalallvfllvfliafflkrny.alafifl 89 
                 + +lg+  g  +++t ++  +p  t+g+ l  ++  ++ ++ + ++ +l+ +           ++p++ ++l+++v   + +  ++++r    l +++ 
  CCE29292.1  94 SDFLGHRDGKHIVATLTVYFHParTVGSMLEAVLIAVVAVAYAEMVCILSMVagiasrtstgsVVPAHaVVLIIFVGGGLGFVGWIKQRLNkPLVNVAS 192
                 566777767666666666666665777777777777777777766666666555666666666666666555555444444445666543324455555 PP

      FUSC_2  90 tllalllyslaa..gsgnpieialhRlldv 117
                 tl  ++++++ +  +s ++ ++   ++++v
  CCE29292.1 193 TLASMAIITVITkeQSVQDGYFSGDKFVQV 222
                 544444444443344555555555555555 PP

  == domain 2  score: 93.4 bits;  conditional E-value: 3.8e-30
      FUSC_2   8 llglwrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgn.lala...llvfllvfliafflkrnyalafifltllalllyslaa. 101
                 ++++wrgeW l++++iv+ +t gas+t+   R++Gt++Gav+a l++ + +gn  +la    +++l+ f++++++k+++ +++++l +++++ly+++  
  CCE29292.1 677 IYQHWRGEWGLLSYMIVVGMTTGASNTTSTSRLIGTLIGAVCACLAWLISQGNaCVLAllgSIMALWNFYMILIIKNGPLGRIALLAYNVIVLYAYSLs 775
                 4899*************************************************966663346799999999********99999999999999999875 PP

      FUSC_2 102 gsgnpie............ialhRlldvliGiliallv 127
                 ++ ++ +            i+ hR+++v++Gi++++++
  CCE29292.1 776 QNVDDDDddeggknplifnITYHRVVAVVLGIIWGMII 813
                 33333336789************************986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       0.7   2.1e+03     338     360 ..     110     132 ..      26     150 .. 0.49
   2 !    4.6   0.0    0.0032       9.4     136     164 ..     227     255 ..     221     315 .. 0.82
   3 ?   -3.6   0.4         1     3e+03     275     326 ..     494     545 ..     465     557 .. 0.39
   4 !   19.9   0.5   7.4e-08   0.00022      29     162 ..     685     830 ..     682     882 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.7
        FUSC 338 arhrdhlaallnglraalailla 360
                 + +++++  + ++l a+l++++a
  CCE29292.1 110 TVYFHPARTVGSMLEAVLIAVVA 132
                 33333333333333333333332 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0032
        FUSC 136 vlGIvCaalVsalvfPrsvapalrarlra 164
                 ++GIv +a+V++lv+  s+++ lr+++ +
  CCE29292.1 227 AVGIVFSAAVNLLVWRLSARRLLRESVVT 255
                 79*********************998754 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1
        FUSC 275 leaalaalrarlralrraleadadtaalllarlaellaelaqllaslralea 326
                 l + ++  r r  a++++ e+ a++ + +  +l+ + +e+a+ l+ l++l++
  CCE29292.1 494 LYTTIELGRSRSVAVQADIEEVAAACGHFSFSLRAVADEMAAYLDVLEELQH 545
                 2222222233333333333333333333333333333333333333333333 PP

  == domain 4  score: 19.9 bits;  conditional E-value: 7.4e-08
        FUSC  29 wAmtTVfiVsqPlsGavlsKslyRllGTllGaaaa.vllvalfvqapllfll..alalWiglclalslldrnfrsYafvLAGYTaalialpavadPet. 123
                 w +++ +iV   ++Ga+   s  Rl+GTl+Ga++a ++ +    +a +l+ll  ++alW + ++ +      +   +++LA   ++l a +  ++ ++ 
  CCE29292.1 685 WGLLSYMIVVGMTTGASNTTSTSRLIGTLIGAVCAcLAWLISQGNACVLALLgsIMALWNFYMILIIK--NGPLGRIALLAYNVIVLYAYSLSQNVDDd 781
                 8888999*************************977144555555666666653346677665554433..55999999999999999999999988889 PP

        FUSC 124 ..........vFdiAvaRvseIvlGIvCaalVsalvfPrsvapalrarl 162
                           +F i   Rv  +vlGI+  +++  l++P s ++++++ l
  CCE29292.1 782 dddeggknplIFNITYHRVVAVVLGIIWGMIICRLLWPISGRNKFKEGL 830
                 99************************************99998887766 PP

>> UxaE  tagaturonate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.1   3.1e+02     382     439 ..      29      86 ..      24      99 .. 0.83
   2 ?    7.3   0.0   0.00054       1.6      80     161 ..     255     335 ..     188     342 .. 0.88
   3 ?   -4.0   0.0       1.4   4.3e+03     146     178 ..    1025    1056 ..    1023    1061 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.1
        UxaE 382 kfalekleeakksYhvtadlekipdlekvkdeelvellekddarqllHityGsvLeak 439
                 ++a  +l+  +++ + t ++++  +  k k +++++ l++ d +q+l  t  ++L ++
  CCE29292.1  29 STAIGRLQRRTSMVQATNQIRSAAHSIKDKSNSVWRWLNSRDGHQVLKCTLAYLLGST 86 
                 56667777778888888888889999999999******************99999766 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00054
        UxaE  80 kasfGlGDRlGlatpghiravkksdvfPvlaqqSiRElnltnRtfkdvldaavwavfqeGykkgfgaDaDHlKteedveeal 161
                 +as+ +GDRl  +t+g ++   +    P +aq S R  + +  ++++ l +a +  +  G +k +  D    K+ e v++a+
  CCE29292.1 255 TASICMGDRLSFVTAGFLNGTDEEINSPEYAQ-SRRRYESVYADMSKSLREAKLEHYVMGREKIYKLDKRLFKSVEAVQQAI 335
                 589******************999999***95.89999999***************************99999999999987 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 1.4
        UxaE  146 aDaDHlKteedveealeagftmitlDlsekikn 178 
                  +D  Hl   e+ ++al   +t++t+ ++e++k+
  CCE29292.1 1025 QDKTHLVV-EEKDYALLYAYTLVTVQVAEELKK 1056
                  66677754.4558899999999**999999988 PP

>> Phage_holin_Dp1  Putative phage holin Dp-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00059       1.8       7      44 ..      73     110 ..      70     113 .. 0.95
   2 ?   -2.1   0.1       1.6   4.8e+03       3      23 ..     217     239 ..     216     245 .. 0.65
   3 ?   -2.9   0.1       2.8   8.3e+03      21      41 ..     711     733 ..     710     742 .. 0.64
   4 ?   -1.2   0.0      0.82   2.5e+03      19      41 ..     829     851 ..     828     854 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00059
  Phage_holin_Dp1   7 dvlKwialvllPalatLvfalgkiynlpetelvVgtit 44 
                      +vlK ++ +ll  +at+  +l+  ++   +  +V t+t
       CCE29292.1  73 QVLKCTLAYLLGSTATFWPVLSDFLGHRDGKHIVATLT 110
                      89**********************************98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.6
  Phage_holin_Dp1   3 nktydvlKwialvll..PalatL 23 
                      +k  +v+K +a+ ++  +a+  L
       CCE29292.1 217 DKFVQVIKMLAVGIVfsAAVNLL 239
                      89999999999755522444445 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.8
  Phage_holin_Dp1  21 atLvfalgk..iynlpetelvVg 41 
                      +tL++a+    ++  ++++ +V+
       CCE29292.1 711 GTLIGAVCAclAWLISQGNACVL 733
                      78888887622444566666665 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.82
  Phage_holin_Dp1  19 alatLvfalgkiynlpetelvVg 41 
                      +l++L+  lg +++  + ++ V 
       CCE29292.1 829 GLSVLYLQLGLLWKRGPLSMLVS 851
                      589**********8777777765 PP

>> FUSC-like  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.5    0.0034        10      26     106 ..     162     254 ..     138     283 .. 0.75
   2 ?    6.4   1.3    0.0014       4.1       4     113 ..     714     838 ..     709     843 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0034
   FUSC-like  26 fvlglllstflftmlgalGqrya..tiafatLl..vaiytmlgasq.......ep.eiwqqplllllGalwYgllsllwsllfpnrpvqqsLa 106
                  v+ ++ +  +++ +g + qr +  ++ +a+ l  +ai t+++ +q       +  ++ q   +l +G ++  +++ll+++l ++r +++s+ 
  CCE29292.1 162 AVVLIIFVGGGLGFVGWIKQRLNkpLVNVASTLasMAIITVITKEQsvqdgyfSGdKFVQVIKMLAVGIVFSAAVNLLVWRLSARRLLRESVV 254
                 344444455567777888887652246666665336899999999999999996658999999***************************975 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0014
   FUSC-like   4 vtllcfalaslivqlllpypwlfvlglllstflftmlgalGqryatiafatLlvaiytmlgasq...............epeiwqqplllllGalwYgl 87 
                 +  +c  la li q       l+  +++l  f ++++   G+  +    a  ++++y+ +  ++                   +++ ++++lG +w ++
  CCE29292.1 714 IGAVCACLAWLISQGNACVLALLGSIMALWNFYMILIIKNGPLGRIALLAYNVIVLYAYSLSQNvddddddeggknpliFNITYHRVVAVVLGIIWGMI 812
                 4566777888899999999999999*******************99999*******9999999999*********99986689**************** PP

   FUSC-like  88 lsllwsllfpnrpvqqsLaelfealA 113
                 +  l + +  +   ++ L+ l+ +l+
  CCE29292.1 813 ICRLLWPISGRNKFKEGLSVLYLQLG 838
                 ************************98 PP

>> DUF2456  Protein of unknown function (DUF2456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1      0.02        60      47      78 ..     195     227 ..     188     244 .. 0.77
   2 ?   -1.1   0.4      0.67     2e+03      32      50 ..     710     728 ..     703     759 .. 0.65
   3 ?    6.0   0.1     0.004        12      18      48 ..     791     821 ..     784     822 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.02
     DUF2456  47 vtigilagi.gkklgsdyyfnntwapqviKlvy 78 
                 ++++i++ i +++  +d yf +  + qviK++ 
  CCE29292.1 195 ASMAIITVItKEQSVQDGYFSGDKFVQVIKMLA 227
                 5899999996333444999999999*****863 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.67
     DUF2456  32 rglllsviiflvlWpvtig 50 
                  g+l+++++ ++ W ++ g
  CCE29292.1 710 IGTLIGAVCACLAWLISQG 728
                 5777777777777777643 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.004
     DUF2456  18 ilvnfiewlvskairglllsviiflvlWpvt 48 
                  ++n+    v  ++ g+++++ii  +lWp++
  CCE29292.1 791 LIFNITYHRVVAVVLGIIWGMIICRLLWPIS 821
                 578888889999*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1076 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 7073.20
//
Query:       CCE29293.1  [L=349]
Description: uncharacterized protein CPUR_02986 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-13   50.4   0.0    5.6e-13   49.3   0.0    1.5  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   3.1e-17   5.6e-13       5      92 ..      80     158 ..      76     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 3.1e-17
  Gly_transf_sug   5 kkaieslakahpdyqvvvlskelekvrvaildlefllsdtpwfeeakkllplfialsDllRlaiLykyGGiYlDtDvivlkslrnsig 92 
                     ++   s++++h+ ++ vv+++e +       +l+ + ++ pw+e++++ lp  i ++Dl+R +++y yGG+Y D+D+ +l +  +++ 
      CCE29293.1  80 QEWSLSCRQKHKGWEWVVWTDE-D-------NLRLVQQHFPWLEDVYNGLPGVIYRADLARHLYMYIYGGVYADLDTECLHPT-EDLQ 158
                     5556699**************9.4.......69999999*****************************************998.6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2660.03
//
Query:       CCE29294.1  [L=329]
Description: uncharacterized protein CPUR_02987 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.057   13.2   0.0       0.12   12.2   0.0    1.5  1  Retrotran_gag_3  gag-polypeptide of LTR copia-type


Domain annotation for each model (and alignments):
>> Retrotran_gag_3  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.7e-06      0.12      11      30 ..      18      38 ..      15      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.7e-06
  Retrotran_gag_3 11 vsvqLdg.dNYssWkramrla 30
                     +s++L+g +NY+ W ++++l+
       CCE29294.1 18 ISPSLKGaENYQEWEISVMLQ 38
                     8999***9***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1074  (0.059903); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2557.92
//
Query:       CCE29295.1  [L=196]
Description: uncharacterized protein CPUR_02988 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-08   34.8   0.0    2.5e-08   34.5   0.0    1.1  1  Hydrolase       haloacid dehalogenase-like hydrolase
    4.8e-08   33.3   0.0    6.4e-08   32.9   0.0    1.2  1  HAD_2           Haloacid dehalogenase-like hydrolase
      2e-06   27.7   0.1    3.3e-06   27.1   0.1    1.3  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.061   13.7   0.0      0.097   13.1   0.0    1.3  1  HAD             haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   5.6e-12   2.5e-08      81     210 .]      16     148 ..       2     148 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 5.6e-12
                 HCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHH.TTGGGESEEEEHHCESSTTTSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  81 dippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanq.lGddyfdaviasdietvakpspeg 178
                 di ++ ++   s+qs +++ +     +l++ +++    + p++  +++ L +  ++ +++t ++ +++++++ + l    f+ v++++     kp+p g
  CCE29295.1  16 DILQHIDSLPPSHQSSAHDTIRA--IELRYMAAQT---PQPGLTTLMRFLDQHALPKAICTRNFDAPVQHLLGKfLQGLRFEPVLTREFRP-CKPDPAG 108
                 66666777777888888888888..7777777665...5******************************7777645567778888888888.9****** PP

                 HHHHHHHHT........STGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 179 kvaaireLq........gkpeevamVGDgvnDaaalaaAg 210
                  ++++r+ +        g+ + v+mVGD++ D++a+++Ag
  CCE29295.1 109 ILHIARQWGlgdgeegeGDASGVIMVGDSMDDMEAGRRAG 148
                 ********99999998888999****************98 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   1.4e-11   6.4e-08      66     176 ..      36     152 ..       4     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.4e-11
       HAD_2  66 lrkyneekkkkevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekalekl........klkkeevi 156
                 +r ++ +      +p +g+  l+  L ++ +  +i T + ++ v++ l ++     F+ ++t e +   KPdp+ i+ + ++         + +++ vi
  CCE29295.1  36 IRAIELRYMA-AQTPQPGLTTLMRFLDQHALPKAICTRNFDAPVQHLLGKFLQGLRFEPVLTRE-FRPCKPDPAGILHIARQWglgdgeegEGDASGVI 132
                 4444444444.67899***********************************99999*9999876.67779*************88888887789999** PP

       HAD_2 157 yvGDsptDieaakkagikvi 176
                 +vGDs  D+ea+++ag  ++
  CCE29295.1 133 MVGDSMDDMEAGRRAGAATV 152
                 ****************9987 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   7.4e-10   3.3e-06      20      74 ..     127     177 ..     101     178 .. 0.69

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 7.4e-10
                     -GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEES CS
  Hydrolase_like  20 dpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddlae 74 
                     d + v+m+GD+  +D++++++aG+ +vL    ++r+  l  +++  + v++ l+e
      CCE29295.1 127 DASGVIMVGDS-MDDMEAGRRAGAATVLLVNEANRE--LG-EHECTDLVIERLDE 177
                     4677*******.9**************998877666..22.34466778888877 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.2e-05     0.097      78     187 ..      44     144 ..      17     145 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.2e-05
         HAD  78 aevirpklldpgalellaahraaGdrvvvvSgglrplvepll.aelg...adevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidle 172
                  ++++p+   pg+ +l++   +   + ++++ +++  v+ ll ++l+   ++ vl  e++ + + +    ++ ++ r+      l +  ++egeg++  
  CCE29295.1  44 MAAQTPQ---PGLTTLMRFLDQHALPKAICTRNFDAPVQHLLgKFLQglrFEPVLTREFRPC-KPDPA--GILHIARQ----WGLGD--GEEGEGDASG 130
                 3455665...899999998889999*****************99999899999999966644.44444..55555555....55556..6666666555 PP

         HAD 173 evvayGDspsDlpll 187
                  v+ +GDs+ D+++ 
  CCE29295.1 131 -VIMVGDSMDDMEAG 144
                 .8999******9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1478.07
//
Query:       CCE29296.1  [L=504]
Description: probable MAP kinase kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-64  217.1   0.0    3.4e-64  216.8   0.0    1.1  1  Pkinase         Protein kinase domain
    2.8e-39  135.0   0.0    3.6e-39  134.6   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00033   19.6   0.0    0.00051   18.9   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
     0.0012   18.2   0.0     0.0027   17.0   0.0    1.4  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.034   13.1   0.0      0.046   12.7   0.0    1.2  1  Haspin_kinase   Haspin like kinase domain
       0.12   11.4   0.0        0.2   10.7   0.0    1.3  1  Seadorna_VP7    Seadornavirus VP7


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.8   0.0   1.1e-67   3.4e-64       2     260 ..      62     321 ..      61     325 .. 0.91

  Alignments for each domain:
  == domain 1  score: 216.8 bits;  conditional E-value: 1.1e-67
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladllerkgslseee 99 
                 e l++lG G+ G+V k+++ +tg i+A K+i +e +k+++ k+++rE++i++ +++++iv++y++f + ++++++++ey++ g+l+++ +  g +  + 
  CCE29296.1  62 EILKELGCGNGGTVSKVKHLSTGTIMARKIIHVEAKKEMR-KRIVRELQIMHGCHSDYIVNFYGAFLNsNNDVIMCMEYMDVGSLDRVSRVFGPVRVDV 159
                 57899****************************9888877.6**********************9987578899****************9999***** PP

                 HHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 100 akkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                 + kia+ +l gl yl+ +++i+HrD+Kp+NiL++++g +K++DFG++ el +s  +++fvgts+Y+APE +++++y+ k+DvWs G+ ++el  gk pf
  CCE29296.1 160 LGKIAEATLGGLTYLYsKHHIMHRDIKPSNILVNSRGSIKLCDFGVSGELINSI-ADTFVGTSTYMAPERIQGEKYTVKSDVWSFGLSIMELAIGKFPF 257
                 ****************5566********************************99.******************************************** PP

                 TTSSHHHHHHHHHHT...HHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 198 sgekgkekvekeldq...lekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellq 260
                  + +++   e+++     l  +++i++e    lp+ + +++ + d+++k+l k+p +R+t +el +
  CCE29296.1 258 GSGDHQ--SEEDCAPvgiLDLLQQIVHEPAPRLPKSDAFPSILEDMIQKCLYKQPDQRPTPQELFD 321
                 954444..45555553446677778888899999999*************************9976 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.0   1.2e-42   3.6e-39       1     255 [.      61     319 ..      61     322 .. 0.88

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 1.2e-42
                  EEEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   1 lelgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkkek 97 
                  le+ k+lG G+ G+V + +      ++ +  a K+++ ea++e ++++++e++im+ ++ + iv+++g+ + +++ +++ +ey++ G+L+   r    
   CCE29296.1  61 LEILKELGCGNGGTVSKVKHL----STGTIMARKIIHVEAKKEMRKRIVRELQIMHGCHSDYIVNFYGAFLnSNNDVIMCMEYMDVGSLDRVSRVF-- 152
                  57899***********99988....889999****************************************56666*************9988876.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvl 194
                   +++++ l ++a     G+ yL sk+ ++Hrd+   N+L++++  +k++DfG++ ++      + +++      +mapE ++ +k+t+ksDvWsfG  
   CCE29296.1 153 GPVRVDVLGKIAEATLGGLTYLYSKHhIMHRDIKPSNILVNSRGSIKLCDFGVSGEL----INSIADTFVGTSTYMAPERIQGEKYTVKSDVWSFGLS 246
                  9*********************8876488**************************99....3344455667789************************ PP

                  HHHHHTTSSGTTTTSHHHH...........HHHHH..HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 195 lwEiftlgespypglknee...........vlekl..kegkrlekpekcpeelyelmkkcweedpeeRptfsel 255
                  ++E++  g+ p+ + ++++           +l+++  +   rl+k +  p+ l ++++kc+ ++p++Rpt +el
   CCE29296.1 247 IMELAI-GKFPFGSGDHQSeedcapvgildLLQQIvhEPAPRLPKSDAFPSILEDMIQKCLYKQPDQRPTPQEL 319
                  ****98.****7655333335677777766777775666789***************************98887 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.7e-07   0.00051     318     400 ..     170     243 ..     157     244 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.7e-07
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDLESf 400
                     g+  L++k  i+HrDi   Nil++     ++ +  L D+ +  el +    s a + +GT  +ma e ++ge+ ++  D+ Sf
      CCE29296.1 170 GLTYLYSKHHIMHRDIKPSNILVN-----SRGSIKLCDFGVSGELIN----SIADTFVGTSTYMAPERIQGEKYTVKSDVWSF 243
                     7788********************.....677888999999999994....445579**************99*999999887 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.2e-07    0.0027     163     256 ..     178     263 ..     170     283 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.2e-07
  Kinase-like 163 kglvhgkftvdnllldekgglmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlatee 256
                  + ++h ++++ n+l + +g ++l +f+       ++ l ++++ +f    +  +  +    +  k+t k d+W  Gl+i  ++  k P++    +
   CCE29296.1 178 HHIMHRDIKPSNILVNSRGSIKLCDFGV------SGELiNSIADTFVGTSTYMAPER---IQGEKYTVKSDVWSFGLSIMELAIGKFPFGSGDHQ 263
                  5799**********************74......33333566666655544444333...34569***********************9976555 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.5e-05     0.046     221     254 ..     173     206 ..      81     215 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
  Haspin_kinase 221 vaEtkfeFEHRdLhldniLvdknlnvtlidlkls 254
                       +k +  HRd++  niLv++ + + l+d+ +s
     CCE29296.1 173 YLYSKHHIMHRDIKPSNILVNSRGSIKLCDFGVS 206
                    556788999*********************9876 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.6e-05       0.2     153     188 ..     170     204 ..     154     252 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.6e-05
  Seadorna_VP7 153 dLmdfhsestnllhGDcnpenlmcDknGylklvDPv 188
                    L  ++ ++++++h D++p+n++ ++ G +kl D +
    CCE29296.1 170 GLTYLY-SKHHIMHRDIKPSNILVNSRGSIKLCDFG 204
                   455555.5669**********************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3605.48
//
Query:       CCE29297.1  [L=178]
Description: uncharacterized protein CPUR_02990 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1364.72
//
Query:       CCE29298.1  [L=304]
Description: uncharacterized protein CPUR_02991 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-25   90.8   7.3    2.2e-25   90.1   7.3    1.4  1  DUF3632   Protein of unknown function (DUF3632)


Domain annotation for each model (and alignments):
>> DUF3632  Protein of unknown function (DUF3632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   7.3   1.2e-29   2.2e-25       1     175 []      73     271 ..      73     271 .. 0.85

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 1.2e-29
     DUF3632   1 WelllevAkqipaaqdkLvellkalrk..deeeegaktedgerlWsdlpllgaalreedeadskereeekeewinlnaFlArltaagvlkd..slyalw 95 
                 W++l ++++++p  +dk+v+ll +++k  d+ ++ a+ +d + +W+++ +    +     ++ +ere+++++win+n+F+A+++++++ +   ++ a w
  CCE29298.1  73 WSSLADAVRKLPDFHDKIVDLLVEIQKvsDPANHFASMVDYQSYWTEFAF-DFKVPR---SNDPERETKRQAWINMNTFCAKISKRRIPQLdeRTRAAW 167
                 9****************************8999**************955.444443...34457899*******************9877******** PP

     DUF3632  96 alreaLE.............................seeeeeeaekeekldadlaaAaqWillageeLyelseeekdkdekdee.....gnagapgplw 160
                 +++eaLE                              +e e    +   l++  +aAa+W+++ ++ +ye + +  d+de+ ++     g        +
  CCE29298.1 168 LFKEALErapweqfhhpdldeqldddpddevvaeecAYELEC--RDVRVLEYWAPAAAAWMKIDAQGIYEMEGKISDADEEGWDpvtwtG--------P 256
                 ************************999998887765333223..366678888888***************8888887777777443322........8 PP

     DUF3632 161 kgfskeRWafWkerf 175
                 kg+skeR+a+W+erf
  CCE29298.1 257 KGWSKERFAYWRERF 271
                 899***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2264.78
//
Query:       CCE29299.1  [L=1418]
Description: related to transcriptional regulator protein SPT6 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-84  280.2   0.0    2.4e-83  278.8   0.0    1.8  1  SH2_2        SH2 domain
    1.1e-40  138.7   1.9    3.5e-40  137.0   1.9    1.9  1  HTH_44       Helix-turn-helix DNA-binding domain of SPT6
    5.5e-31  107.0   0.0    1.3e-30  105.8   0.0    1.7  1  HHH_7        Helix-hairpin-helix motif
    5.3e-29  100.9   0.0    4.7e-28   97.9   0.0    2.6  2  YqgF         Holliday-junction resolvase-like of SPT6
      6e-21   74.8  27.8      6e-21   74.8  27.8    6.7  7  SPT6_acidic  Acidic N-terminal SPT6
    1.5e-06   29.0   2.5    1.5e-05   25.8   0.9    3.5  2  HHH_9        HHH domain
    1.6e-05   24.9   0.0    4.5e-05   23.5   0.0    1.8  1  SH2          SH2 domain
    3.4e-05   24.1   0.1    8.5e-05   22.8   0.1    1.7  1  S1           S1 RNA binding domain
     0.0016   18.7   0.0     0.0037   17.5   0.0    1.6  1  HHH_3        Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> SH2_2  SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.8   0.0   1.2e-86   2.4e-83       2     215 ..    1197    1406 ..    1196    1407 .. 0.96

  Alignments for each domain:
  == domain 1  score: 278.8 bits;  conditional E-value: 1.2e-86
       SH2_2    2 ydeeaeeedlkkeeekkkkeekkrkkyvkRvikHpnFknvsaeeaeellaskerGdvviRPSskgedhLtvtwkvadgvyqhidvlEedkenefslg 98  
                  +d++ e++d k+e  ++k++++ r++   Rv+kHpnFk++++ +aee+l s++ G+v+iRPSskg+dhL++twkvad+vyqhidvlE++k++efs+g
  CCE29299.1 1197 WDYALEAAD-KDE-LREKDQTTGRTQ---RVVKHPNFKPFNSIQAEEYLGSQPPGEVIIRPSSKGNDHLAITWKVADNVYQHIDVLEMQKDTEFSVG 1288
                  888999998.444.566676899999...******************************************************************** PP

       SH2_2   99 ktLiigk.eeyeDLDeliarhvepmakkveellahekfkkgskeeveelLreekkanpkrsvYafslskkkpgkflLsflankkarveheyvkvipe 194 
                  k L+ig+ ++y+DLDeli++hv++ma+kveel++h+k++++s++e+e++L+++ +anp+rs+Yaf++++k+pg+f+L+f+a+++arv   +v+ ip+
  CCE29299.1 1289 KLLRIGGkYTYSDLDELIVDHVKAMARKVEELMRHDKYQSRSRSETEKWLTTYIDANPNRSAYAFCIDPKHPGYFWLCFKASRSARVIGLPVRSIPQ 1385
                  *****9989**************************************************************************************** PP

       SH2_2  195 gfklrkqefddvkaLlnwFKk 215 
                  g++l++ +++d++aL+n+FK 
  CCE29299.1 1386 GYELKGYQYPDMRALCNGFKL 1406
                  ********************6 PP

>> HTH_44  Helix-turn-helix DNA-binding domain of SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   1.9   1.7e-43   3.5e-40       2     114 ..     300     424 ..     299     427 .. 0.97

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 1.7e-43
                 T---HHHHHHHHHHHHHHHHHHH---SS---HHHHHHHHHHHHHHHTS---HHHHHHH-GGGSB-SSTTS-.................B--HHHHHHHH CS
      HTH_44   2 keltdeeleeeaeWiakkllkekqesleeleeefkeavkkvleFlvkdelEvPfifqhRkdyllhaekeek.............kaeklLneddLwriv 87 
                 ++lt e+++eea+Wi+++l+++k   + el+ +f +a++kvleF+++de+EvP++fqhRkdyllh++k +k             +++klLn+ddLwri+
  CCE29299.1 300 LQLTAEQFKEEAKWITNQLWPKKGLPQ-ELQAPFSKAIGKVLEFFIVDEVEVPYVFQHRKDYLLHSKKIRKstrddpdgpdytiQSDKLLNQDDLWRIL 397
                 799*********************666.*****************************************999*************************** PP

                 HHHHHHHHHHHHHHHHHHHHHCC---- CS
      HTH_44  88 eldikfrsllekrnaleklyeklkvdD 114
                 eld+kfrs++ekrn+lek+ye+lk+ D
  CCE29299.1 398 ELDVKFRSFVEKRNSLEKTYESLKTVD 424
                 ***********************9866 PP

>> HHH_7  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   6.4e-34   1.3e-30       1     104 []     873     982 ..     873     982 .. 0.93

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 6.4e-34
                 HHHHTS---TTGGGS-HHHHHHHHHHHHHHHHHHH-EEHHHHCT-HHHHGGGGGSTT--HHHHHHHHHHHHHC-S----TTHHHHT......TSS-HHH CS
       HHH_7   1 edvlslsfhPlqellskeellkaletalvdivnlvgvdvnkavankyeaallkyiaGlGprkatdllkklkrlnerlearsqlitk......qilskkv 93 
                 +dv slsfh  q+ll++++l+k+le+a+vd vn+vg+++n a+a++y+a+ll+yiaGlGprkat ++k ++++++ +++r +l+         +++++v
  CCE29299.1 873 RDVSSLSFHTCQHLLPQDKLMKYLESAMVDTVNMVGLNINDAMADPYTANLLPYIAGLGPRKATSVIKAINANGGSVNTRDELVGDpdsgklPVVGPRV 971
                 69**********************************************************************************7522222247899** PP

                 HHHHCCCEE-- CS
       HHH_7  94 flncagflkid 104
                 + nca+fl+id
  CCE29299.1 972 WNNCASFLYID 982
                 *********97 PP

>> YqgF  Holliday-junction resolvase-like of SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.77   1.5e+03      30      59 ..     235     264 ..     229     269 .. 0.76
   2 !   97.9   0.0   2.3e-31   4.7e-28       2     149 ..     716     871 ..     715     872 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.77
                 S-EEE.EEEE-S-TT-SS-SHHHHHHHHHHH CS
        YqgF  30 Gevvd.slklaareedrekkakfvetlkkfl 59 
                 Ge  d  l++ ++eedre++++ +e lk++ 
  CCE29299.1 235 GEDYDwALQMEDDEEDREREEQGIE-LKDVF 264
                 554442588999************9.77765 PP

  == domain 2  score: 97.9 bits;  conditional E-value: 2.3e-31
                 -----EEEEE-TT--.TTS-EEEEEE-TTS-EEEEEEE-S-TT-SS-SHHHHHHHHHHHHHH--SEEEE--SSTHHHHHHHHHHHHHHHTT.B...... CS
        YqgF   2 gkiikvLgvafgkgr.sddaiicvlvngeGevvdslklaareedrekkakfvetlkkfllskkPdvigvsGenrdaqkliedvkevlheke.q...... 92 
                 g+ ++vL++++g g    d++  ++v+++G v+++ k+ +  +d +++++f+e    ++++ +Pdv+++sG + +++kl++d++  +++k+        
  CCE29299.1 716 GTTPRVLALSNGMGDpVRDPVCWTWVEEDGRVIEQGKFGNLARDEAERDEFAE----LVRRRRPDVLAISGWSANTNKLVRDLEALVSDKDlRgaefdd 810
                 789************999********************999999999999999....9*****************************998642233333 PP

                 ....-TTS-B--EEE---TTHHHHHTSHHHHHHSTT--HHHHHHHHHHHHHH-HHHHHHCS CS
        YqgF  93 ....dsrlstvgvilvddevailYqnskkaeaefrdkPpllkyavalaRkiqdPLleyaql 149
                     d r ++++v++vddeva+lY++s +a+ae + + ++ +y++ laR++q+P+ eya+l
  CCE29299.1 811 petnDYRTEPLEVVIVDDEVARLYKDSPRAVAEHPSLSSVTRYCIGLARYMQNPMKEYAAL 871
                 3222568899*************************************************98 PP

>> SPT6_acidic  Acidic N-terminal SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   4.0       2.2   4.4e+03      23      42 ..      16      35 ..       2      44 .. 0.44
   2 !   74.8  27.8     3e-24     6e-21       2      88 ..      43     137 ..      41     138 .. 0.77
   3 ?   -2.4   0.9       3.6   7.3e+03       8      30 ..     140     162 ..     136     177 .. 0.61
   4 ?   -4.8  12.3         9   1.8e+04      14      63 ..     175     226 ..     154     239 .. 0.65
   5 ?   -6.7   7.7         9   1.8e+04      24      34 ..     246     256 ..     236     306 .. 0.58
   6 ?    2.2   0.3      0.14   2.8e+02      14      68 ..     337     399 ..     333     424 .. 0.66
   7 ?   -2.3   1.2       3.5   6.9e+03      58      63 ..    1017    1022 ..    1000    1069 .. 0.49

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.2
  SPT6_acidic 23 dddeeeeeeeeseeeeekkr 42
                 dd+e++e+ +e++ e++ +r
   CCE29299.1 16 DDEEDDESFDEETGETTGRR 35
                 33333333333322222222 PP

  == domain 2  score: 74.8 bits;  conditional E-value: 3e-24
  SPT6_acidic   2 ssEE..edddeeeerkvregFIvdddeeeeeeeesee......eeekkrrkkkkkrre...eeedaLdedDldLieentgvkvkrkk.kkfkRlkrae 87 
                  ssEE  +dddeee+rk+regFIvd+de+eee ee++e      +        k+kr++   e+e++LdedDl+Li e+ g+++k ++ +kfkRlkr++
   CCE29299.1  43 SSEEeeDDDDEEEARKIREGFIVDEDEDEEELEEEDEgsdaepN----PVPVKRKREHrdrEHEERLDEDDLELIGEQFGERPKPESqSKFKRLKRGH 136
                  555545999*****************999999888855754431....32222222222225668******************99888********99 PP

  SPT6_acidic  88 d 88 
                  +
   CCE29299.1 137 R 137
                  6 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.6
  SPT6_acidic   8 ddeeeerkvregFIvdddeeeee 30 
                  d+   er+ +++   d+de+  +
   CCE29299.1 140 DNTRTERRGLDEIFSDEDEDGAD 162
                  34444445555555676666544 PP

  == domain 4  score: -4.8 bits;  conditional E-value: 9
  SPT6_acidic  14 rkvregFIvdd.deeeeeeeese.eeeekkrrkkkkkrreeeedaLdedDld 63 
                   ++ ++FI +d +ee++ee  ++ e+ee  r + +      +   Ld d ld
   CCE29299.1 175 ADEFDDFIEEDfPEEDDEERTRRlEDEEVARPRDRGVGTVVDTTGLDKDALD 226
                  4567899*98854555555555545555555555544443444677776665 PP

  == domain 5  score: -6.7 bits;  conditional E-value: 9
  SPT6_acidic  24 ddeeeeeeees 34 
                  ddee+ e+ee+
   CCE29299.1 246 DDEEDREREEQ 256
                  22222222222 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.14
  SPT6_acidic  14 rkvregFIvdddeeeeeeeeseeeeekkrrkkkkkrre.........eeedaLdedDldLieen 68 
                   kv+e FIvd+ e      +++++   + +k +k+ r+         ++++ L++dDl  i e 
   CCE29299.1 337 GKVLEFFIVDEVEV-PYVFQHRKDYLLHSKKIRKSTRDdpdgpdytiQSDKLLNQDDLWRILEL 399
                  57889999998543.3333334444455555555555456789988877789999999776665 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 3.5
  SPT6_acidic   58 dedDld 63  
                   de+D +
   CCE29299.1 1017 DEEDVK 1022
                   333221 PP

>> HHH_9  HHH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         7   1.4e+04      10      35 ..     287     312 ..     287     334 .. 0.71
   2 !   25.8   0.9   7.7e-09   1.5e-05       1      66 [.     991    1081 ..     991    1085 .. 0.48

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7
       HHH_9  10 PEsYalakkllkklgldlkeligeea 35 
                 PE ++l +k +k+l+l+ ++ ++e++
  CCE29299.1 287 PERFQLERKAFKNLQLTAEQFKEEAK 312
                 89999999999999988887655544 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 7.7e-09
       HHH_9    1 npLDnTavHPEsYalakkllkk.lgldlkelige......eallkkl....dkkklaeeevgep..............tleDIleeLakPg 66  
                  +pLDnT vHPE Y+l +k++++ l+ld +++++e       a ++kl    ++++++e  ++e+              tle I +eL++P 
  CCE29299.1  991 DPLDNTRVHPEDYELGRKMAADaLELDEEDVKAEtdengpGAIVRKLfkqdEQERVNELVLDEYadqlltnfsqrkraTLEAISAELQAPY 1081
                  69****************9886466666665544222222122333211111111111111111222222222333336666666666665 PP

>> SH2  SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.2e-08   4.5e-05       8      77 .]    1233    1309 ..    1227    1309 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.2e-08
                  HHHHHHHHHTTSSTTEEEEEEESSSTTEEEEEEEETT.EEEEEEEEEETTS......EEEEETTEE.ESSHHHHHHHH CS
         SH2    8 rkeaerlLleekkdGtFLvReSeskpGdytlsvvedg.kvkhykiqsteng......kyyiteeek.fsslaeLvehY 77  
                    +ae++L + +++G+ ++R S++ +++++++++  +   +h+++ + ++       k+ ++++++ +s+l+eL+  +
  CCE29299.1 1233 SIQAEEYLGS-QPPGEVIIRPSSKGNDHLAITWKVADnVYQHIDVLEMQKDtefsvgKLLRIGGKYtYSDLDELIVDH 1309
                  569*******.**********************9999567999999998888899997666665555*******9765 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   4.3e-08   8.5e-05       4      74 ..    1110    1177 ..    1108    1178 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 4.3e-08
                  TTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEE CS
          S1    4 kgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsi 74  
                  +g +v  +V  v ++ a+V l+ g+eg v a+e+ ++    + ++vl+ G++v  k+l+++++   + ls+
  CCE29299.1 1110 EGMIVPVNVRMVRDDFAIVKLDCGIEGRVEAHEVNSR---ASVKDVLSTGQTVQGKILELNYKDFLAKLSM 1177
                  68899999999************************88...9********************9988777776 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.9e-06    0.0037       1      47 [.     904     956 ..     904     979 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.9e-06
       HHH_3   1 vnavgvdiNtA.....saeeLqklpGlgpklAknIvayReknG.pfksreeLl 47 
                 vn vg +iN A     +a +L +++Glgp++A  ++++ ++nG  +++r+eL+
  CCE29299.1 904 VNMVGLNINDAmadpyTANLLPYIAGLGPRKATSVIKAINANGgSVNTRDELV 956
                 689999***9966666788***********************659******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.04u 0.29s 00:00:01.33 Elapsed: 00:00:00.45
# Mc/sec: 9528.90
//
Query:       CCE29300.1  [L=118]
Description: uncharacterized protein CPUR_02993 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.039   14.1   0.0      0.054   13.7   0.0    1.2  1  TOBE_2    TOBE domain


Domain annotation for each model (and alignments):
>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     3e-06     0.054      25      75 ..      38      89 ..      32      90 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-06
      TOBE_2 25 dveylGsstryvvelaggqlvvvrqpnadrd.salapGdtVelswdpddavv 75
                d   lG + ry+++ +g + ++v+    +   +a+a++ tV + +d  +  +
  CCE29300.1 38 DQCSLGPHNRYTCRDEGKTVMTVVHKKDAFTfTAFAVDATVYINCDNGKNAL 89
                55679*********999999877777776656*************9877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 887.55
//
Query:       CCE29301.1  [L=202]
Description: uncharacterized protein CPUR_02994 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1501.28
//
Query:       CCE29302.1  [L=447]
Description: uncharacterized protein CPUR_02995 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-21   75.9   0.0    3.1e-16   59.5   0.0    2.1  2  PIF1             PIF1-like helicase
    3.4e-05   23.6   0.0    6.7e-05   22.7   0.0    1.4  1  AAA_30           AAA domain
  ------ inclusion threshold ------
       0.05   13.4   0.0       0.11   12.3   0.0    1.5  1  UvrD_C_2         UvrD-like helicase C-terminal domain
      0.056   11.4   0.0      0.083   10.8   0.0    1.1  1  Herpes_Helicase  Helicase
        0.1   12.9   0.0       0.25   11.7   0.0    1.6  1  AAA_19           AAA domain


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   8.6e-20   3.1e-16      49     222 ..      11     180 ..       7     204 .. 0.86
   2 !   14.4   0.0   4.6e-06     0.016     330     363 ..     253     286 ..     239     287 .. 0.85

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 8.6e-20
                 TCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-H.HHHHHHTSCCCHHHHHC-SEEEEECGGGSBHHHHHHHHHHHHHHCT-...-SCCCC-EEEE CS
        PIF1  49 egkivlavAssGvAalllegGrtahsrfkiplekdee.stckikrgsklaellkktsliiwDEapmverecfealdrtlrdilkekeidkpFGGktvvl 146
                 +++ v+ +A +G Aa+ + +G t h+ f++p++  e+ s +     s l+++l+ +s +i+DE +m++   +  +d+ lr+   e++ d pF G  + +
  CCE29302.1  11 RRSPVARIAPTGAAANCI-HGYTDHAYFGLPVQSFETlSPLGPDGVSALRRRLEGVSYLIVDEKSMISLVKLAWVDQRLREAYPESN-DYPFAGFSITV 107
                 567899************.9************986651667888999*************************************999.*********** PP

                 E--TTS-----SSS...SS---BGC...CSCHHHH--.EEEE-S-STTTT...........HHHHHHHHHHHCT---CCC CS
        PIF1 147 gGDfrQilPviekg...sraeivaasikeSklWkevk.vlkLtknmRllsesldetekkelkeFskwllkigdGkineed 222
                 +GDf Q++Pv+  +    r+++ +a i   + ++ ++ +++    +R+++++           F  +l ++++G+ + +d
  CCE29302.1 108 AGDFYQLPPVSGMAlfeARPHTTMA-IADKNTYDALSvTIRFVTLVRQSDTD------ASSIAFRRVLENMRQGNPDLTD 180
                 **********988744367777777.99999999977699999999999964......3445799999999999876655 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.6e-06
                 -SCEEE-TT-EEEE-S--CTT-SC-TCEEEEEEE CS
        PIF1 330 nhvLkLkvGvpvmllrNldqsaGLcNGtrlivtq 363
                 + +L L +G+ vml  N+ ++aGL+ G+r+ v++
  CCE29302.1 253 TAELLLSIGARVMLTTNIWTEAGLVTGSRGYVVD 286
                 45788*************************9975 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.9e-08   6.7e-05      48     175 ..      14     177 ..       7     191 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.9e-08
      AAA_30  48 rviglAptgkaAkvLa.....eelgieastiakllkrlk......grarlepgtllivDEagmvdtkqlaallkaaeka..........gakvilvGDe 125
                 +v+ +Aptg+aA+ +      + +g++ ++ + l   l+       r rle  + livDE +m++  +la + +++++a          g ++ ++GD 
  CCE29302.1  14 PVARIAPTGAAANCIHgytdhAYFGLPVQSFETLS-PLGpdgvsaLRRRLEGVSYLIVDEKSMISLVKLAWVDQRLREAypesndypfaGFSITVAGDF 111
                 68889999999999994443334445666666554.33468799744677777**************9999999999888889999**99********* PP

      AAA_30 126 rQlasVeaGgvlrdlvea...........agigtaeLtevvRqkes.....eeraaalalregdae 175
                  Ql++V+  ++++   ++           a   t++  ++vRq+++     ++r++ +++r+g+++
  CCE29302.1 112 YQLPPVSGMALFEARPHTtmaiadkntydALSVTIRFVTLVRQSDTdassiAFRRVLENMRQGNPD 177
                 ******988888765433444444333333334455555556644234445677777777777776 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.2e-05      0.11       3      44 ..     362     399 ..     361     400 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.2e-05
    UvrD_C_2   3 yaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTR 44 
                 y +tihk+ G   +  iv+     ++r +     lLY+a++R
  CCE29302.1 362 YGMTIHKSRGMTLDLAIVDLKARGTPR-P---LGLLYVALSR 399
                 569***************444444433.4...89*******9 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.3e-05     0.083     732     777 ..     362     408 ..     354     417 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.3e-05
  Herpes_Helicase 732 lamtiaksqGlslekvAicFgnh.knlklssvYvalsRatdseflvm 777
                        mti ks G+ l+   ++  +      l  +YvalsR+   e+l++
       CCE29302.1 362 YGMTIHKSRGMTLDLAIVDLKARgTPRPLGLLYVALSRVWRLEHLTI 408
                      57******************99945556899*********9999976 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.9e-05      0.25      45     144 ..      15     117 ..       7     119 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.9e-05
      AAA_19  45 illvaftgrAakelrerlaa..lgaeatTiHrlalldfddlltealelleeaeeekklqeee.llivDEfqdvdelqyrLlkallgek.kk........ 131
                 ++ +a+tg Aa+ ++  ++   +g++ + +  l+ l+ d+       +l+     + l e+  +livDE ++++ +  + +++ l e+  +        
  CCE29302.1  15 VARIAPTGAAANCIHGYTDHayFGLPVQSFETLSPLGPDGVS-----ALR-----RRL-EGVsYLIVDEKSMISLVKLAWVDQRLREAyPEsndypfag 102
                 556777777777777655331145566666666555555555.....333.....466.5555**********97766655555433322245569999 PP

      AAA_19 132 ..lllvGDpdQliyv 144
                   +++ GD  Ql++v
  CCE29302.1 103 fsITVAGDFYQLPPV 117
                 999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3439.63
//
Query:       CCE29303.1  [L=198]
Description: uncharacterized protein CPUR_02996 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1468.80
//
Query:       CCE29304.1  [L=495]
Description: uncharacterized protein CPUR_02997 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-05   24.6   0.1    5.3e-05   23.0   0.1    1.9  1  F-box-like      F-box-like
    2.5e-05   24.0   0.0     0.0001   22.0   0.0    2.0  1  F-box           F-box domain
     0.0035   16.3   0.0     0.0048   15.8   0.0    1.1  1  Trp_halogenase  Tryptophan halogenase
  ------ inclusion threshold ------
       0.04   14.3   3.0        8.5    7.0   0.1    5.0  6  LRR_4           Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   1.2e-08   5.3e-05       3      35 ..      14      46 ..      12      59 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.2e-08
  F-box-like  3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrva 35
                 LP+E+  +IFsyL++ ++l    VC+ W++  
  CCE29304.1 14 CLPPELVTDIFSYLNTGEMLISLSVCKEWKNTL 46
                6*************7776666568*****9876 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.3e-08    0.0001       3      39 ..      12      48 ..      11      53 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.3e-08
                HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT CS
       F-box  3 lsrLPsevlrhILerLplsdllalrrVSkgwrilids 39
                 ++LP+e++ +I+++L++ + l   +V+k w++ + +
  CCE29304.1 12 PLCLPPELVTDIFSYLNTGEMLISLSVCKEWKNTLTR 48
                589******************************9876 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-06    0.0048     118     174 ..     423     483 ..     395     488 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-06
                     -HHHHH-SCHHHHHTTB-SB-TT....S-B-S--EEEE-HHHHHHHHHHHHHHCT-EEEE- CS
  Trp_halogenase 118 eledysleavaakakkfsprekd....glsalsyAyhldaalyakfLrrvaearGvtrveg 174
                     +l++ s+e+ a +   f +++k+    +  ++ yAyh + +   +fLr+ ae+rGv+ +  
      CCE29304.1 423 NLQTLSIESNAYRLPSFTHLMKEilklTHLKTIYAYHYNDHARVRFLRQAAEERGVELITE 483
                     566777777777777788888777766566888***********************98765 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.82   3.7e+03      21      28 ..     109     116 ..     102     120 .. 0.71
   2 ?    1.6   0.0     0.089     4e+02      22      32 ..     199     209 ..     187     219 .. 0.74
   3 ?    0.5   0.0      0.21   9.3e+02      20      32 ..     221     236 ..     212     240 .. 0.73
   4 ?   -2.3   0.0       1.6   7.1e+03      11      32 ..     378     399 ..     376     405 .. 0.81
   5 ?    7.0   0.1    0.0019       8.5      18      33 ..     416     432 ..     411     444 .. 0.79
   6 ?   -1.8   0.0       1.1   4.8e+03      21      29 ..     448     456 ..     435     461 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.82
                 H-TT--EE CS
       LRR_4  21 klpnLkeL 28 
                   pnL++L
  CCE29304.1 109 ASPNLEHL 116
                 46788877 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.089
                 -TT--EEE-.- CS
       LRR_4  22 lpnLkeLdLsg 32 
                 lp+Lk+L + +
  CCE29304.1 199 LPKLKTLRMEE 209
                 9******9944 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.21
                 H..H.-TT--EEE-.- CS
       LRR_4  20 e..k.lpnLkeLdLsg 32 
                 +    +p L++L Ls+
  CCE29304.1 221 NlsDaFPGLEQLFLSQ 236
                 44444999***99965 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
                 S---E-S-HHH-TT--EEE-.- CS
       LRR_4  11 NqltdiplleklpnLkeLdLsg 32 
                 N+l+  ++l++ p+  +L + +
  CCE29304.1 378 NHLQGYEWLRGAPSIVTLGCYH 399
                 7899999999999999987755 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0019
                 -.HHH-TT--EEE-.-S CS
       LRR_4  18 l.leklpnLkeLdLsgN 33 
                   l+ +pnL++L++ +N
  CCE29304.1 416 QfLATFPNLQTLSIESN 432
                 43667*********777 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 1.1
                 H-TT--EEE CS
       LRR_4  21 klpnLkeLd 29 
                 kl++Lk+++
  CCE29304.1 448 KLTHLKTIY 456
                 488888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3854.00
//
Query:       CCE29305.1  [L=248]
Description: uncharacterized protein CPUR_02998 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-06   28.0   0.0    2.9e-06   27.1   0.0    1.5  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase
  ------ inclusion threshold ------
      0.036   13.6   0.1       0.26   10.8   0.0    2.1  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   3.3e-10   2.9e-06       2      64 ..     187     246 ..     186     248 .] 0.89

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 3.3e-10
  Exo_endo_phos_2   2 liisvYippsdelenlestlekllselkspkiiilGDfNakhplWgsedtdssargeeLiefl 64 
                       i+svY p  +      + ++++++++ + + +++GDfN +hplW++ +++ s   +eL+ef+
       CCE29305.1 187 EIYSVYSPAYE--AVWVTPIQEFMTAPVQARSVFVGDFNQHHPLWDKAERT-SPGSDELLEFT 246
                      699*******9..999999*******9988****************96655.78889999987 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.8e-05      0.26      32     167 ..     126     236 ..     105     243 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.8e-05
                    SEEEEEEEBSCTCHHHHHHHHH......TTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEECCCHHG CS
                    xxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  32 DvlgLQEvdddelsriplllal......ggflgasstsptgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlniashrdh 121
                    Dv+++QE  + +  ++p+ +++      ++ ++a       ++ ++++g            +  +  ++++++  l                    
     CCE29305.1 126 DVIAFQEPTGIAK-IPPHSSLGpfqlavYAGRTA-------IYVNRQHGP----------EEWSSGTGTDWCSIVLKGIE-------------IYS 190
                    8888888555543.22222222555444222222.......222333333..........22222222222222222222.............333 PP

                    HHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 122 dlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrt 167
                     +++  ++ ++ +  e  +a+ +a+ +++GDfN ++  +d   +++
     CCE29305.1 191 VYSPAYEAVWVTPIQEFMTAPVQARSVFVGDFNQHHPLWDKAERTS 236
                    4556667788888888888999999999**********99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1971.16
//
Query:       CCE29306.1  [L=531]
Description: uncharacterized protein CPUR_02999 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-18   65.2   0.0    3.5e-09   36.5   0.0    2.2  2  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.7e-10   3.1e-06       3      61 ..     122     186 ..     120     197 .. 0.83
   2 !   36.5   0.0     2e-13   3.5e-09     137     222 .]     200     308 ..     190     308 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.7e-10
                 -TT.....S-EEE......-THHHHCTB--...........-------HHHH............. CS
       RVT_1   3 Kkg....pgsyRpisllsvdykalnkliakrLkdvl..ekllsenqpgfrpgrstldavedllka 61 
                 K+     +g++Rpislls+ +k+l+ ++a r + ++  +  l+e q+g r +rst+ a+ +l++ 
  CCE29306.1 122 KPEeyheAGGWRPISLLSIVGKVLEVAVAARVTAAAesNGSLPELQMGNRANRSTEVALSTLAEV 186
                 444677789***************************99999**************8888444443 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 2e-13
                 TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH......HHHHHHHHHHHHHHTT--BEGGG-EEE....................... CS
       RVT_1 137 vlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee......lqelleaveewlkesglkinpeKtklvlft.................v.k 211
                 ++SP+lf +++ +l ++l+ + +   +l + D++  ++ +++       l+++++ +++w  esglk+np K++l++ft                    
  CCE29306.1 200 PMSPILFLIYIAPLYEKLKAA-EHTITLGFSDETNTIAYGRTVeetqerLESAWSFCQDWSVESGLKFNPRKSELLHFTrsreaittavgldstttIsP 297
                 69*****************85.899999******999999888889999*******************************************998647* PP

                 ESSEEETTEEE CS
       RVT_1 212 seevkyLGvtl 222
                 +e+ ++LGv++
  CCE29306.1 298 KESSRFLGVHI 308
                 ********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4064.52
//
Query:       CCE29307.1  [L=286]
Description: uncharacterized protein CPUR_03000 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2330.91
//
Query:       CCE29308.1  [L=111]
Description: uncharacterized protein CPUR_03001 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.04   14.0   0.5      0.086   12.9   0.6    1.5  2  Smoothelin  Smoothelin cytoskeleton protein


Domain annotation for each model (and alignments):
>> Smoothelin  Smoothelin cytoskeleton protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.34     6e+03      21      37 ..       6      22 ..       2      22 .. 0.68
   2 ?   12.9   0.6   4.8e-06     0.086      22      46 ..      82     106 ..      71     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.34
  Smoothelin 21 evLdkmLeqasdyEeRr 37
                e+L+ +L  +  +  Rr
  CCE29308.1  6 EALEVLLHGVGRSAARR 22
                67888887776666665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.8e-06
  Smoothelin  22 vLdkmLeqasdyEeRrrIRAalReL 46 
                 +L+ mL ++ +  +R+ IR+ +R+L
  CCE29308.1  82 ALKMMLTETLSDAMRKDIRSTIRRL 106
                 6999*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 856.80
//
Query:       CCE29309.1  [L=121]
Description: uncharacterized protein CPUR_03002 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.018   15.2   1.8      0.052   13.7   0.0    2.5  2  CBM_14    Chitin binding Peritrophin-A domain


Domain annotation for each model (and alignments):
>> CBM_14  Chitin binding Peritrophin-A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.5      0.06   1.1e+03      24      24 ..      43      43 ..      13      60 .. 0.64
   2 ?   13.7   0.0   2.9e-06     0.052       9      34 ..      73      98 ..      66     100 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.06
      CBM_14 24 g 24
                g
  CCE29309.1 43 G 43
                3 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.9e-06
      CBM_14  9 fadptdCskYyvCsngepveftCpeg 34
                 a + d + Y+ C+ng+++ f+C  g
  CCE29309.1 73 TAFDVDATVYINCDNGKSELFSCRVG 98
                444789999**************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 975.81
//
Query:       CCE29310.1  [L=469]
Description: uncharacterized protein CPUR_03003 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-06   27.0   0.2    9.4e-06   25.4   0.2    1.8  1  F-box-like      F-box-like
    6.1e-06   26.0   0.1      2e-05   24.3   0.1    1.8  1  F-box           F-box domain
  ------ inclusion threshold ------
      0.089   11.6   0.0       0.13   11.1   0.0    1.1  1  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.2   1.6e-09   9.4e-06       4      35 ..      15      46 ..      13      59 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.6e-09
  F-box-like  4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrva 35
                LP+E+  +IFsyL++s++l    VC+ W++  
  CCE29310.1 15 LPPELVTDIFSYLNTSEMLISLSVCKEWKNTL 46
                9***************9888889*****9876 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   3.4e-09     2e-05       3      39 ..      12      48 ..      11      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.4e-09
                HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT CS
       F-box  3 lsrLPsevlrhILerLplsdllalrrVSkgwrilids 39
                 ++LP+e++ +I+++L++s+ l   +V+k w++ + +
  CCE29310.1 12 PFCLPPELVTDIFSYLNTSEMLISLSVCKEWKNTLTR 48
                589******************************9876 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.1e-05      0.13     127     175 ..     406     458 ..     387     462 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.1e-05
                     HHHHHTTB-SB-TT....S-B-S--EEEE-HHHHHHHHHHHHHHCT-EEEE-- CS
  Trp_halogenase 127 vaakakkfsprekd....glsalsyAyhldaalyakfLrrvaearGvtrvegk 175
                     +  +   f +++k+    +  ++ y yh + +   +fLr+ ae+rGv+ + g+
      CCE29310.1 406 SRYRLPSFTHLMKEilklTHLKTIYTYHYNDHPRVRFLRQAAEERGVELIMGE 458
                     555555555555555544455788************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3842.96
//
Query:       CCE29311.1  [L=491]
Description: uncharacterized protein CPUR_03004 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-70  236.8   0.0    3.8e-70  236.3   0.0    1.2  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase
  ------ inclusion threshold ------
      0.064   13.7   0.0       0.14   12.6   0.0    1.6  1  DUF150    RimP N-terminal domain


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.3   0.0   4.2e-74   3.8e-70       1     241 [.      10     248 ..      10     249 .. 0.96

  Alignments for each domain:
  == domain 1  score: 236.3 bits;  conditional E-value: 4.2e-74
       RVT_2   1 ktyrlvslPkdrkaigsrWvftkkkddl.kevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvk 98 
                 kt++lv  P +rk++g++W +++k+    + v++kar v++Gf q  g dy+e+fa v++  s + l a+aa  +l +hq+dv++afL + +d+ vyv 
  CCE29311.1  10 KTWTLVPRPGNRKTLGAKWAYKLKRGPSgEIVRHKARWVVRGFEQEEGLDYQETFASVVKPMSYKALFAIAAALNLELHQMDVKTAFLYGLIDDLVYVE 108
                 79**********************9988799******************************************************************** PP

       RVT_2  99 qPpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakkfklkdlg 197
                 qP Gf+     ++v+ Lnk+lyGlkq+p++W++++  +L  lgf++ ++  G++v+g    +l+va+yvddll+ag+d   ++ vk  l+k+f+++dlg
  CCE29311.1 109 QPEGFNDG--TDRVCLLNKALYGLKQSPRIWYNTLAIFLCTLGFKPLTSDLGVFVKG----NLYVAIYVDDLLLAGPDLDDIKAVKAALSKRFEMEDLG 201
                 *****987..99********************************************9....9************************************* PP

       RVT_2 198 kvskfLGieiaq..eaggiklsladyiakvvkkfeltdak.tvatPl 241
                 + +++LG+ei++   + +++l++++y +k++ +f++ +++   atP+
  CCE29311.1 202 ECHHYLGMEIVRdrPNRTLRLNQRAYTQKILGEFQMDNSNkRFATPM 248
                 **********99444778999***************88661567887 PP

>> DUF150  RimP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.6e-05      0.14      22      58 ..     162     200 ..     155     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
      DUF150  22 grgrvlriyidk..dggvtlddcekvSraisalLdvedp 58 
                 +++ ++ iy+d    +g +ldd+++v  a+s++++ ed 
  CCE29311.1 162 KGNLYVAIYVDDllLAGPDLDDIKAVKAALSKRFEMEDL 200
                 46899******777899*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3933.64
//
Query:       CCE29312.1  [L=195]
Description: uncharacterized protein CPUR_03005 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1440.13
//
Query:       CCE29313.1  [L=490]
Description: uncharacterized protein CPUR_03006 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0002   21.2   0.9     0.0006   19.7   0.8    1.9  2  F-box-like  F-box-like
     0.0033   17.2   0.4      0.012   15.5   0.4    2.0  1  F-box       F-box domain
  ------ inclusion threshold ------
      0.022   15.2   7.0         11    6.6   0.0    4.8  6  LRR_4       Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.8     1e-07    0.0006       3      44 ..      14      57 ..      12      60 .. 0.83
   2 ?   -3.3   0.0       1.5   9.1e+03      26      34 ..     131     139 ..     120     140 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1e-07
  F-box-like  3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrr 44
                 LP  +  +IF yL++s+++   +VC+ W+r   ++    LWr+
  CCE29313.1 14 CLPAGVVTKIFLYLNFSEIILSLRVCKEWNRTLTSPlhSTLWRN 57
                69999*************99999********9955433467776 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.5
  F-box-like  26 lVCrrWrrv 34 
                 + C++ r+v
  CCE29313.1 131 QLCKQLRNV 139
                 558888876 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4     2e-06     0.012       4      39 ..      13      48 ..      11      54 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2e-06
                HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT CS
       F-box  4 srLPsevlrhILerLplsdllalrrVSkgwrilids 39
                ++LP  v+ +I+ +L++s+++   rV+k w++ + s
  CCE29313.1 13 LCLPAGVVTKIFLYLNFSEIILSLRVCKEWNRTLTS 48
                7888889************************98877 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.51     3e+03      22      28 ..     109     115 ..     102     128 .. 0.76
   2 ?    0.0   0.2      0.22   1.3e+03       1      31 [.     110     142 ..     110     146 .. 0.67
   3 ?    5.1   0.0    0.0054        32      11      42 ..     186     211 ..     183     217 .. 0.74
   4 ?    6.6   0.0    0.0018        11       1      32 [.     196     232 ..     196     239 .. 0.80
   5 ?    4.5   0.0    0.0086        52      18      32 ..     412     425 ..     407     435 .. 0.74
   6 ?    6.2   0.4    0.0025        15       1      32 [.     417     454 ..     417     465 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.51
                 -TT--EE CS
       LRR_4  22 lpnLkeL 28 
                  pnL++L
  CCE29313.1 109 SPNLEHL 115
                 6777777 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.22
                 SS--EEE--SS---E-S-HH..H.-TT--EEE-. CS
       LRR_4   1 pnLevLdLsnNqltdiplle..k.lpnLkeLdLs 31 
                 pnLe+L   +  + d+ l++  + +++L+ ++++
  CCE29313.1 110 PNLEHLEYTQ-PVEDLLLPSdeQlCKQLRNVSIH 142
                 6777777776.77776664455778888888875 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0054
                 S---.E-S-HHH-TT--EEE-.-S-----GGGG CS
       LRR_4  11 Nqlt.diplleklpnLkeLdLsgNnlitdldeL 42 
                 + l  +ip+   lp+Lk+L + +     ++++L
  CCE29313.1 186 TELEpEIPF---LPKLKTLRIKES----SITGL 211
                 556667888...********9555....66655 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0018
                 SS--EEE--SS---E-S-....HHH.-TT--EEE-.- CS
       LRR_4   1 pnLevLdLsnNqltdipl....lek.lpnLkeLdLsg 32 
                 p+L++L +    +t +pl    l+  +p L++L +s+
  CCE29313.1 196 PKLKTLRIKESSITGLPLplfhLSDaFPGLEQLFVSQ 232
                 79*******669******77554455*******9965 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.0086
                 -HHH-TT--EEE-.- CS
       LRR_4  18 lleklpnLkeLdLsg 32 
                 +l+ +pnL++L++ +
  CCE29313.1 412 FLATFPNLQTLSI-R 425
                 36679******99.3 PP

  == domain 6  score: 6.2 bits;  conditional E-value: 0.0025
                 SS--EEE--SS-.....--E-S-..HHH-TT--EEE-.- CS
       LRR_4   1 pnLevLdLsnNq.....ltdipl..leklpnLkeLdLsg 32 
                 pnL++L++++++      t +    l+ l++Lk++++++
  CCE29313.1 417 PNLQTLSIRSTRytilpFTYLVEviLR-LTHLKTIYIND 454
                 799999999999555554433336677.*********44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3738.70
//
Query:       CCE29314.1  [L=182]
Description: uncharacterized protein CPUR_03007 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0019   18.9   4.1      0.016   16.0   1.2    2.5  2  TPR_14    Tetratricopeptide repeat
     0.0026   17.5   1.5       0.56   10.1   0.1    3.2  3  TPR_1     Tetratricopeptide repeat
     0.0093   16.0   2.7        6.6    7.1   0.0    3.1  3  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.2   0.4        3.1    7.6   0.0    2.3  2  TPR_11    TPR repeat
       0.14   12.6   0.0       0.22   11.9   0.0    1.3  1  DUF5634   Family of unknown function (DUF5634)


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.055     2e+02      12      31 ..       5      24 ..       2      27 .. 0.80
   2 !   16.0   1.2   4.5e-06     0.016       2      43 ..      83     124 ..      82     125 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.055
      TPR_14 12 lalGdpdeAiallrralala 31
                 ++G+   A++ ++ra++l+
  CCE29314.1  5 VESGRQSHAAKEYERAVELF 24
                56788888999999998875 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 4.5e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +al ++a+ ++a +++d A++ ++++++laP+ ++ +l+l+ 
  CCE29314.1  83 QALDCRAATYEAMDRLDLAEKDAEWMIELAPQLPDGYLRLGN 124
                 6899**********************************9985 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.015        55      14      27 ..      14      27 ..      11      29 .. 0.83
   2 !   10.1   0.1   0.00016      0.56       7      33 ..      88     114 ..      84     115 .. 0.95
   3 ?    0.7   0.0      0.14   5.2e+02       2      13 ..     117     128 ..     116     129 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.015
                TT-HHHHHHHHHHH CS
       TPR_1 14 lgkydeAleyyekA 27
                 ++y+ A+e +  A
  CCE29314.1 14 AKEYERAVELFTMA 27
                58999999999887 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00016
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 ++++y  + ++d A+++ e  +el P+
  CCE29314.1  88 RAATYEAMDRLDLAEKDAEWMIELAPQ 114
                 899**********************96 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfk 13 
                 + + +lGn+ + 
  CCE29314.1 117 DGYLRLGNLARL 128
                 78999**99765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0018       6.6      13      31 ..       6      24 ..       3      27 .. 0.83
   2 !    7.0   0.2    0.0021       7.4       3      33 ..      84     114 ..      82     115 .. 0.88
   3 ?    0.4   0.0      0.25   9.1e+02       2      15 ..     117     130 ..     116     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0018
       TPR_2 13 klgdyeeAleafekAleld 31
                ++g+   A++ +e+A+el 
  CCE29314.1  6 ESGRQSHAAKEYERAVELF 24
                5688889999999999985 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0021
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 al +++  y+++++++ A+++ e  +el+P+
  CCE29314.1  84 ALDCRAATYEAMDRLDLAEKDAEWMIELAPQ 114
                 8999****************99988887775 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.25
       TPR_2   2 ealynlGlayyklg 15 
                 +++ +lG++++ + 
  CCE29314.1 117 DGYLRLGNLARLQT 130
                 56778888877665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00086       3.1       4      23 ..       4      23 ..       3      23 .. 0.92
   2 ?    5.5   0.1    0.0037        13      21      37 ..     109     125 ..     109     126 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00086
      TPR_11  4 yyeqGkyeeAieaYkkAlkl 23
                ++e G+   A ++Y++A++l
  CCE29314.1  4 LVESGRQSHAAKEYERAVEL 23
                6899**************97 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0037
      TPR_11  21 lkldPdnaeayynLGla 37 
                 ++l P+ ++ y+ LG++
  CCE29314.1 109 IELAPQLPDGYLRLGNL 125
                 7999***********85 PP

>> DUF5634  Family of unknown function (DUF5634)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     6e-05      0.22      23      77 ..      51     111 ..      40     126 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6e-05
     DUF5634  23 gledigifeeeGqgdeyylGytvkkddkvyhihl......PfikdeegelalekkeWtves 77 
                   +  +ifee  +  ++ +G t +k d+v hi+        ++  ++ +la ++ eW++e 
  CCE29314.1  51 AAQGGSIFEEVSRTCRCEVGNTFNKCDRVDHIQAldcraaTYEAMDRLDLAEKDAEWMIEL 111
                 556668**************************85333333688888888999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1338.81
//
Query:       CCE29315.1  [L=325]
Description: uncharacterized protein CPUR_03008 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0042   17.5   3.4         16    6.0   0.0    5.3  5  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.15   2.8e+03      22      28 ..      32      38 ..      23      39 .. 0.67
   2 !    5.3   0.2    0.0015        27      11      30 ..     109     126 ..      92     162 .. 0.79
   3 ?   -0.7   0.0      0.12   2.1e+03      12      30 ..     208     226 ..     205     229 .. 0.88
   4 !    6.0   0.0   0.00091        16      18      42 ..     246     267 ..     240     269 .. 0.76
   5 ?   -3.1   0.0      0.71   1.3e+04      23      32 ..     278     286 ..     277     297 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.15
                -TT--EE CS
       LRR_4 22 lpnLkeL 28
                 pnL++L
  CCE29315.1 32 SPNLEHL 38
                6777777 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0015
                 S---.E-S-HHH-TT--EEE- CS
       LRR_4  11 Nqlt.diplleklpnLkeLdL 30 
                 + l  +ip+   lp+Lk+L +
  CCE29315.1 109 TDLEsSIPF---LPKLKTLRM 126
                 357778888...999999988 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.12
                 ---E-S-HHH-TT--EEE- CS
       LRR_4  12 qltdiplleklpnLkeLdL 30 
                 ql++ ++l++ p+ ++L +
  CCE29315.1 208 QLKSYDWLRGAPSIHTLGC 226
                 79999****99*9999966 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.00091
                 -HHH-TT--EEE-.-S-----GGGG CS
       LRR_4  18 lleklpnLkeLdLsgNnlitdldeL 42 
                 +l+ +pnL++L++ +  + +d+d++
  CCE29315.1 246 FLATFPNLRTLSI-R--PMEDIDTF 267
                 3667********9.6..66888766 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 0.71
                 TT--EEE-.- CS
       LRR_4  23 pnLkeLdLsg 32 
                 ++L+++++ g
  CCE29315.1 278 THLETIYM-G 286
                 57888887.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 2291.75
//
Query:       CCE29316.1  [L=384]
Description: uncharacterized protein CPUR_03009 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-39  132.9   0.0    1.2e-38  132.5   0.0    1.2  1  Octopine_DH     NAD/NADP octopine/nopaline dehydrogenase, alp
    1.5e-07   31.9   0.1    3.4e-07   30.8   0.1    1.7  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    3.5e-06   26.8   0.4    6.2e-06   25.9   0.4    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0018   17.9   0.2     0.0046   16.6   0.2    1.6  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
     0.0027   17.6   2.8      0.019   14.8   2.8    2.4  1  Rossmann-like   Rossmann-like domain
     0.0043   16.7   1.8     0.0043   16.7   1.8    1.5  2  DAO             FAD dependent oxidoreductase
     0.0061   16.8   0.5      0.013   15.7   0.5    1.6  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0065   16.5   0.0      0.015   15.3   0.0    1.6  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
  ------ inclusion threshold ------
      0.018   14.7   0.1      0.034   13.8   0.1    1.4  1  Amdase          Arylmalonate decarboxylase
      0.041   13.1   0.7       0.07   12.3   0.7    1.4  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      0.064   13.4   0.0        0.1   12.8   0.0    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
      0.079   12.8   0.8       0.13   12.1   0.2    1.6  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.091   13.1   0.0       0.22   11.9   0.0    1.6  1  TAL_effector    TAL effector repeat
        0.1   11.6   1.4       0.15   11.1   1.4    1.2  1  GIDA            Glucose inhibited division protein A
       0.13   12.7   0.0       0.34   11.4   0.0    2.1  1  NAD_binding_7   Putative NAD(P)-binding
       0.14   11.5   0.1       0.31   10.4   0.1    1.6  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
       0.18   12.4   0.1       0.59   10.7   0.1    1.9  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Octopine_DH  NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.0   1.1e-41   1.2e-38       3     149 ..     192     332 ..     190     333 .. 0.97

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 1.1e-41
  Octopine_DH   3 envleitLsnvNpiiHppaallnlsrieetegdfslyyegitpsvaevlealdeErlaiakalglevlplaerlldaYgdeikdksslaevirtneay 100
                   + l+i+L+ +N ++H+p+al+nl++ie+t+gdf +y++g+++ v++++eald+Erla+a+a+++++ ++  +++ +Yg   ++  +l+++++++  +
   CCE29316.1 192 ASALDIFLTSINGVMHVPTALMNLGWIETTNGDFLFYRHGMSQGVCRIMEALDQERLAVAAAYDCRIDSALATMNANYG---TKEVTLRDFVAKSTPH 286
                  6889**************************************************************************9...8999************ PP

  Octopine_DH 101 kgikaPmsldhRyltEDipygLvvlkslAellgvptpvidsvielasai 149
                  ++ k+    ++R+l  D+py+Lv++++l+ ++gvptp ids+i+las++
   CCE29316.1 287 NKTKGV---QKRFLEQDVPYWLVLCSDLGARAGVPTPSIDSLITLASTL 332
                  ****97...68***********************************975 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1   3.2e-10   3.4e-07       1      94 [.       3     104 ..       3     107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 3.2e-10
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEE.EEESSCCCHHHHHHHHC...........-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHH CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivv.ansrnpekaeelaeelg...........vkvtavdneeaaeeadvvvlavkpedveevlselakd 84 
                    +igiiGaG++g ala  l+++g   h++v+ a + +p + ++++++ g           v v+   n  a    +++++av+    + v++el+++
     CCE29316.1   3 RIGIIGAGHVGCALAFDLASRG---HDVVIrAPEGHPGSTAKIKANGGnidatgllsgrVCVCV-GNGLAQLTETILIVAVPGPGNDPVIRELRQH 94 
                    79********************...99997455778999999999999*********7766666.55555558999******************** PP

                    HHTTSEEEEE CS
  F420_oxidored  85 alkgklvisv 94 
                    +l++k++i +
     CCE29316.1  95 DLSNKTIIFI 104
                    *******965 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.4   5.8e-09   6.2e-06       1     146 [.       4     152 ..       4     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 5.8e-09
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH...HHHHHHHHCEEEEETT...CEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGG.E CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr...rlealkknGlrltseg...geeilrppealsaeekselepidlvivtvKayqteealeeikpl.l 92 
                 i i+GaG +G+ la  La  g+dv++ + +      +++k nG +++  g   g + + + + l++          ++iv+v+   ++ +++e++++ l
  CCE29316.1   4 IGIIGAGHVGCALAFDLASRGHDVVIRAPEGhpgSTAKIKANGGNIDATGllsGRVCVCVGNGLAQL------TETILIVAVPGPGNDPVIRELRQHdL 96 
                 79*********************998876553234566************98888888888888777......5579****************888735 PP

                 CTCEEEEEESSSSCHHHHHTTTSTTS.EEEEEEEE-EEEEEETTEEEECS.--EEE CS
        ApbA  93 dpntvvlllqNGlgheeelrealpkp.rvlggvtthgatregpgevhhag.kgeik 146
                  ++t++ +  N +    + + +  ++  +  +++++++  +g+g v  +g k++++
  CCE29316.1  97 SNKTIIFIAGNAVTFTARAALQGAARaVLATATSPFSSRISGDGSVSVRGiKKRLQ 152
                 555777777898765544444444451555556669999999**999998666665 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   4.3e-06    0.0046       2      28 ..       3      29 ..       2      31 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.3e-06
                    EEEEE--STTHHHHHHHHHHCTSEEEE CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevig 28
                    +i +iG+G+vG   a  la++gh+v++
      CCE29316.1  3 RIGIIGAGHVGCALAFDLASRGHDVVI 29
                    89***********************85 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   2.8   1.8e-05     0.019      12      38 ..       3      29 ..       1     131 [. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
  Rossmann-like 12 svGiisaGrvGtalgaaleraghvvvg 38
                    +Gii+aG+vG al+  l+  gh vv 
     CCE29316.1  3 RIGIIGAGHVGCALAFDLASRGHDVVI 29
                   58*********************9974 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.8   4.1e-06    0.0043       2      41 ..       4      45 ..       3      58 .. 0.83
   2 ?   -3.3   0.0         5   5.3e+03     149     174 ..     109     134 ..     102     174 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.1e-06
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSE CS
         DAO  2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrns 41
                + iiG+G +G++ A++La rg  V++   +  +gs a  ++ 
  CCE29316.1  4 IGIIGAGHVGCALAFDLASRGhdVVIRAPEGHPGSTAKIKAN 45
                77******************9999999988888875554444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5
                 HHHHHHHHHHTT-EEEESECEEE.EEE CS
         DAO 149 taalaraaealGveilegtevtg.lee 174
                 + + araa +++++ ++  ++t+ ++ 
  CCE29316.1 109 VTFTARAALQGAARAVLA-TATSpFSS 134
                 666777888888888877.44443533 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.5   1.2e-05     0.013       1      36 [.       6      41 ..       6      54 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   I+GaG  G+++A  La +g+dv++     ++G  a+
     CCE29316.1  6 IIGAGHVGCALAFDLASRGHDVVIRAPEGHPGSTAK 41
                   9*********************99777777765555 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.4e-05     0.015       2      96 ..       4      98 ..       3     119 .. 0.77
   2 ?   -3.0   0.0         6   6.4e+03      13      62 ..     261     310 ..     260     313 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.4e-05
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-H..HHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--TT CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvree..elieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqalrevlkklkgllkkk 96
                    i+++GaG  G alA  la++gh+v++ + e     + +i+++  n +    ++    +++ + la+  +  +i++++vP      v+++l ++   +
      CCE29316.1  4 IGIIGAGHVGCALAFDLASRGHDVVIRAPEGhpGSTAKIKANGGNIDATGLLSGRVCVCVGNGLAQLTE--TILIVAVPGPGNDPVIRELRQHDLSN 98
                    89***********************98877655788889998888886666555556666666666555..78888888888888887777765444 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6
                     HHHHHHHTTT.--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES- CS
  NAD_Gly3P_dh_N  13 alAkvlaeng.hevrlwvreeelieeineehenvkyLpgiklpenlvattd 62 
                     alA++ a+ g +ev+l  + ++ + + +++   +++L++ ++p  lv  +d
      CCE29316.1 261 ALATMNANYGtKEVTLRDFVAKSTPHNKTKGVQKRFLEQ-DVPYWLVLCSD 310
                     677776666667777777777777777777777777765.66666666666 PP

>> Amdase  Arylmalonate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   3.2e-05     0.034      84     130 ..     231     277 ..     228     285 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.2e-05
      Amdase  84 tmssavvealralgarRvAvataYidevnerLvayLeesglevaale 130
                  ms+ v + ++al  +R+Ava+aY  +++++L++  ++ g + ++l+
  CCE29316.1 231 GMSQGVCRIMEALDQERLAVAAAYDCRIDSALATMNANYGTKEVTLR 277
                 6********************************99999888877776 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.7   6.6e-05      0.07       2      38 ..       3      38 ..       2     154 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.6e-05
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclng 38
                 ++ +iG+G+ G+a+a +la  g++v++  + + +++ 
   CCE29316.1  3 RIGIIGAGHVGCALAFDLASRGHDVVIR-APEGHPGS 38
                 5679********************9998.44434433 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.6e-05       0.1       1      79 [.       3      94 ..       3     133 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.6e-05
                   EEEEE--SHHHHHHHHHHHHTT-EEEEE-..SSHHHHHHHHHTT..........EEE-SSHHHHHHHC.SEEEE-SSSHHHHHHHHHSHCCC CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnllkagykvavyn..rtkekveelvaeg..........akaaesieelvasl.dvvitmvkagkavdeviegllea 79
                   +ig+iG G  G  +a  l+++g++v++     ++ ++ ++ a+g           +++  + + +a+l ++++++   g+  d vi++l ++
     CCE29316.1  3 RIGIIGAGHVGCALAFDLASRGHDVVIRApeGHPGSTAKIKANGgnidatgllsGRVCVCVGNGLAQLtETILIVAVPGPGNDPVIRELRQH 94
                   59***********************9876224567777777777676655555544444444444444566666666666667777776544 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00012      0.13       2      30 ..       4      32 ..       3      51 .. 0.88
   2 ?   -2.9   0.0         5   5.2e+03     106     117 ..     121     132 ..     114     135 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdi 30
                +++iGaG +G  +a  +as+g++Vv+   
  CCE29316.1  4 IGIIGAGHVGCALAFDLASRGHDVVIRAP 32
                89**********************98765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5
                 TTSEEEE--SSS CS
     3HCDH_N 106 pdailasnTSsl 117
                 ++a+la+ TS +
  CCE29316.1 121 ARAVLATATSPF 132
                 5799*****976 PP

>> TAL_effector  TAL effector repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00021      0.22      16      33 .]      90     107 ..      89     107 .. 0.96

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
                   HHHHTT--HHHHHHHHTS CS
  TAL_effector  16 aLrqrGfSradIVkIAgN 33 
                   +Lrq+++S+  I+ IAgN
    CCE29316.1  90 ELRQHDLSNKTIIFIAGN 107
                   69***************9 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.4   0.00014      0.15       2      30 ..       4      32 ..       3      76 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
                EEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLith 30
                + +iG+Gh Gc+ A+ +a +G++v++ ++
  CCE29316.1  4 IGIIGAGHVGCALAFDLASRGHDVVIRAP 32
                569*********************99844 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00032      0.34       9      55 ..       3      79 ..       1     264 [. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00032
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeee..............................l 55
                   ++ ++G+G v+   +  l++ g +v++ ape ++ +  ++k++  +                              +
     CCE29316.1  3 RIGIIGAGHVGCALAFDLASRGHDVVIRAPEGHPGSTAKIKANGGNidatgllsgrvcvcvgnglaqltetilivaV 79
                   6779***************************7555555555554442333333333333333333333333344440 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00029      0.31      38      73 ..       3      38 ..       1      56 [. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00029
                  EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73
                  ++GiiG+G++G a+a  l++ g +v++  +  ++ +
    CCE29316.1  3 RIGIIGAGHVGCALAFDLASRGHDVVIRAPEGHPGS 38
                  79***********************99998888766 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00056      0.59       1      27 [.       3      29 ..       3      41 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00056
                EEEEECSSHHHHHHHHHHHHTTSEEEE CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtv 27
                ++ ++G+G +g+ lA  la  g++V +
  CCE29316.1  3 RIGIIGAGHVGCALAFDLASRGHDVVI 29
                688********************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2903.60
//
Query:       CCE29317.1  [L=148]
Description: uncharacterized protein CPUR_03010 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00058   20.7   0.1    0.00088   20.1   0.1    1.4  1  HABP4_PAI-RBP1  Hyaluronan / mRNA binding family


Domain annotation for each model (and alignments):
>> HABP4_PAI-RBP1  Hyaluronan / mRNA binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   4.9e-08   0.00088      18      42 ..      61      85 ..      52     142 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.9e-08
  HABP4_PAI-RBP1 18 eeKregagrgnWGtvkdeieeqeee 42
                    + K++g+grgnWGt +d++ +++ +
      CCE29317.1 61 KVKKDGNGRGNWGTIADDVMDEDFK 85
                    67****************8654433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1147.89
//
Query:       CCE29318.1  [L=533]
Description: related to O-methylsterigmatocystin oxidoreductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-68  232.0   0.0    1.4e-68  231.7   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.7   0.0     8e-73   1.4e-68       1     442 [.      31     472 ..      31     496 .. 0.82

  Alignments for each domain:
  == domain 1  score: 231.7 bits;  conditional E-value: 8e-73
                 --SESEHHCCHCHHHHTTTCCH.HHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHH CS
        p450   1 Ppgptplplvgnllqlgrkeel.hevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkkl 98 
                 Ppgp+ lp+vgn+l l  ++++ +e+  kl+  ygpi ++ + +++ v+l+++eav+e+l+kk+ ++s+r   +++++      +   l+++g+ ++++
  CCE29318.1  31 PPGPKGLPIVGNVLDLPPEGIPeYEHWLKLKDVYGPISSISVLGTTLVILHSHEAVQELLVKKSTKTSAR-PAFHFSNMC-GLGNLTPLVTSGPVHRQH 127
                 9****************9555427788899**********************************9****9.779999844.556667889999****** PP

                 HHHHHHHHTSH.STT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH.HHHHHHHHHHHHHHHHCHHHHCCCC CS
        p450  99 Rrfltptltsf.gkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledek.lselvkaveelssllskssvqllll 194
                 ++++++++ +      ++ ++ + e+++++ +     +      + e++   a  +i +i++g  ++ ++ +   s +++a+++ s+ +  ++   +++
  CCE29318.1 128 HKLMHQKMGTRlL-VgQFSSTQDVESRRFLLRAL--DDPE---RLMEHIKTEASAIILKIVYGYTIEPYKVDPlVSLIERAMDTFSKTV-LPFAWAVDI 219
                 ***********53.34899999988888874433..3333...4689999999999*******99887775541444555666666644.455568999 PP

                 CHHHTCCSCHH.....HHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCT....SSSSHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 195 fpllkylptkl.....lrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkge....sklsdeelaatvlellfaGvdTtsstlsw 284
                 fp l+ylp++l      ++++e +++ + ++d       + +++  + + + +++ l++ +e++ge    s+  +  l++++  l+++G+dTt s +s 
  CCE29318.1 220 FPQLRYLPSWLpgvsfHKTAREWRRVNESMIDVPYDFVVQRMSRG-NFTPSYISHYLEQNDENSGEkqvlSQQEESALKNSAAILFGGGSDTTVSSVSS 317
                 999***999763333134444444444444444455555555555.5678899999999833333355666667777********************** PP

                 HHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS- CS
        p450 285 aLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeF 383
                 +++ ++ +Pevq++ ++Eidev+g+ r p ++d+ +lpy++avikE+ R  pvvp+++++++ +++v++gy ipkG   ++++++ ++dpe + nP eF
  CCE29318.1 318 FILAMILYPEVQRRAQQEIDEVVGGERLPGFEDRDHLPYMNAVIKEAYRWMPVVPIGTTHVAEEEIVFSGYRIPKGAYLLPSIWWFMHDPETYANPSEF 416
                 ***********************999************************************************************************* PP

                 -GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTS CS
        p450 384 dpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetd 442
                 +p+RFl      + ++ +   FG G+R+C+G+ lA   l+l +++++ + +v+  + +d
  CCE29318.1 417 NPDRFLAPGR--EEPDPRDHVFGYGRRICPGRYLADGTLFLTISRIIATLDVTA-KLDD 472
                 ********65..478888888****************************99986.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 4128.14
//
Query:       CCE29319.1  [L=739]
Description: uncharacterized protein CPUR_03012 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-06   28.5   3.8    2.2e-05   24.3   1.5    2.9  2  F-box-like  F-box-like
    3.8e-05   23.5   0.5     0.0001   22.1   0.5    1.8  1  F-box       F-box domain
  ------ inclusion threshold ------
      0.012   16.4   0.6      0.059   14.2   0.2    2.4  2  TPR_14      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.013        78      19      36 ..     109     126 ..     104     134 .. 0.84
   2 !   24.3   1.5   3.6e-09   2.2e-05       3      46 ..     253     298 ..     251     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.013
  F-box-like  19 sdLlrlalVCrrWrrval 36 
                 +d+ r++++C+++  va 
  CCE29319.1 109 RDIKRGRCTCKDFEKVAT 126
                 689999**********94 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 3.6e-09
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrlv 46 
                  LP E+  +IFsyL + ++l + +V+++W     ++  + LWr ++
  CCE29319.1 253 CLPAELVTHIFSYLTFDQILLCLRVSKQWTCTLTSPvhAPLWRDMT 298
                 6****************************76664444467777665 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.5   1.7e-08    0.0001       4      33 ..     252     281 ..     249     289 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.7e-08
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgw 33 
                 ++LP e++ hI+++L +  +l + rVSk w
  CCE29319.1 252 LCLPAELVTHIFSYLTFDQILLCLRVSKQW 281
                 79**************************** PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.9   1.1e+04      14      28 ..      88     102 ..      79     111 .. 0.61
   2 ?   14.2   0.2   9.8e-06     0.059       2      43 ..     157     198 ..     156     199 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.9
      TPR_14  14 lGdpdeAiallrral 28 
                 + ++++A+ l+  a 
  CCE29319.1  88 AKNYRRALGLFTSAM 102
                 455566665555544 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 9.8e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 eal  +a  + alG+++ A++ ++++l+laP  ++ +l+l++
  CCE29319.1 157 EALDFRATTFVALGELEHAMKDAEWMLELAPRLPDGYLRLGK 198
                 7888999*********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.19s 00:00:00.77 Elapsed: 00:00:00.36
# Mc/sec: 6193.33
//
Query:       CCE29320.1  [L=508]
Description: uncharacterized protein CPUR_03013 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00016   21.4   0.2      0.015   15.1   0.0    2.9  3  TPR_1     Tetratricopeptide repeat
     0.0051   16.8   0.1      0.097   12.8   0.1    2.9  3  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.025   15.4   0.2        0.3   12.0   0.3    2.4  2  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.6e-06     0.015       2      33 ..      24      55 ..      23      56 .. 0.95
   2 ?    3.4   0.0     0.012        73       2      18 ..      58      74 ..      57      85 .. 0.85
   3 ?   -3.3   0.0       1.6   9.4e+03       4      12 ..     290     298 ..     289     299 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  2 kalynlGnayfklgkydeAleyyekALelnPn 33
                +al+++++a+  +g++d A  + e+ L l P+
  CCE29320.1 24 EALNGRAAAFEAMGDLDRATHDAERILVLAPE 55
                89**************************9996 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.012
                HHHHHHHHHHHHTT-HH CS
       TPR_1  2 kalynlGnayfklgkyd 18
                + + +lGn+ + +++ d
  CCE29320.1 58 DGYLRLGNIAQLQKNGD 74
                789**********9855 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.6
                 HHHHHHHHH CS
       TPR_1   4 lynlGnayf 12 
                 + n+Gn ++
  CCE29320.1 290 CINRGNSLQ 298
                 679**9875 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   1.6e-05     0.097       2      33 ..      24      55 ..      23      56 .. 0.96
   2 ?   -0.3   0.0      0.27   1.6e+03       2      16 ..      58      72 ..      57      75 .. 0.82
   3 ?   -1.6   0.0      0.69   4.1e+03      18      30 ..     348     360 ..     347     362 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleldPn 33
                eal+ ++ a +++gd+++A ++ e+ l l+P+
  CCE29320.1 24 EALNGRAAAFEAMGDLDRATHDAERILVLAPE 55
                89****************************97 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.27
       TPR_2  2 ealynlGlayyklgd 16
                +++ +lG+++  +++
  CCE29320.1 58 DGYLRLGNIAQLQKN 72
                678999999998876 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.69
       TPR_2  18 eeAleafekAlel 30 
                 e A++++ kA++ 
  CCE29320.1 348 EGARNLLSKAIQT 360
                 789*******985 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   5.1e-05       0.3       2      42 ..      24      64 ..      23      66 .. 0.92
   2 ?    0.0   0.0      0.35   2.1e+03      17      31 ..     347     361 ..     346     364 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.1e-05
      TPR_14  2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42
                eal  +a+a++a Gd+d+A   ++r+l laP+ ++ +l+l+
  CCE29320.1 24 EALNGRAAAFEAMGDLDRATHDAERILVLAPELPDGYLRLG 64
                577779*******************************9998 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.35
      TPR_14  17 pdeAiallrralala 31 
                 p++A++ll +a++++
  CCE29320.1 347 PEGARNLLSKAIQTN 361
                 799********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3480.46
//
Query:       CCE29321.1  [L=705]
Description: uncharacterized protein CPUR_03014 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.001   18.9   0.8      0.001   18.9   0.8    2.9  3  F-box-like  F-box-like
     0.0027   17.5   0.0     0.0079   16.0   0.0    1.9  1  TPR_1       Tetratricopeptide repeat
     0.0055   16.5   1.1       0.02   14.8   1.1    1.9  1  F-box       F-box domain
  ------ inclusion threshold ------
      0.014   16.1   0.2      0.056   14.3   0.1    2.2  2  TPR_14      Tetratricopeptide repeat
      0.046   14.4   0.0      0.097   13.3   0.0    1.5  1  TPR_16      Tetratricopeptide repeat
      0.057   13.6   0.0       0.12   12.6   0.0    1.5  1  FISNA       Fish-specific NACHT associated domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.39   1.2e+03      26      36 ..      93     103 ..      79     111 .. 0.84
   2 !   18.9   0.8   3.4e-07     0.001       3      45 ..     228     272 ..     226     275 .. 0.81
   3 ?   -3.1   0.1       2.6   7.9e+03       8      15 ..     649     656 ..     648     664 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.39
  F-box-like  26 lVCrrWrrval 36 
                 ++C+++  va 
  CCE29321.1  93 CTCKDFEKVAT 103
                 79******994 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 3.4e-07
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrl 45 
                  LP Ei +qIF  L+  ++l + +V+++W+    ++  + LWr +
  CCE29321.1 228 CLPAEIVSQIFFNLKCDEILLCLRVSKQWKCTLTSPlnAGLWRDM 272
                 6***********9*999************9777554334677665 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.6
  F-box-like   8 iLlqIFsy 15 
                 +Ll+I++ 
  CCE29321.1 649 LLLKILRL 656
                 79***984 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.6e-06    0.0079       2      33 ..     134     165 ..     133     166 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.6e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 +al+ ++ ++ ++gk+d+A ++ e  Lel P 
  CCE29321.1 134 QALCSRAETFEEMGKLDDAMKDAEWILELAPR 165
                 79***************************995 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.1   6.7e-06      0.02       4      38 ..     227     261 ..     225     264 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.7e-06
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwrilid 38 
                 ++LP e++ +I+ +L   ++l + rVSk w+  + 
  CCE29321.1 227 LCLPAEIVSQIFFNLKCDEILLCLRVSKQWKCTLT 261
                 79****************************97665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.9e-05     0.056       6      43 ..     138     175 ..     133     176 .. 0.92
   2 ?   -3.1   0.0         6   1.8e+04      14      32 ..     207     226 ..     206     228 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                  +ae +++ G++d+A++ ++++l+laP  ++ +lll++
  CCE29321.1 138 SRAETFEEMGKLDDAMKDAEWILELAPRLPDGYLLLGK 175
                 5899*******************************997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6
      TPR_14  14 lGdpdeAiallrra.lalaP 32 
                 l+++ +A++ l+r  l+++P
  CCE29321.1 207 LQQLHDARKPLNRHfLRQDP 226
                 67899999999985466665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.2e-05     0.097       3      44 ..     139     177 ..     137     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.2e-05
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaa 44 
                 +a  + + g+ ddA + +e+ l+++   P+ ++ +lllg +a
  CCE29321.1 139 RAETFEEMGKLDDAMKDAEWILELA---PRLPDGYLLLGKIA 177
                 6778899******************...99999******887 PP

>> FISNA  Fish-specific NACHT associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.1e-05      0.12      23      56 ..     657     692 ..     652     699 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.1e-05
       FISNA  23 tlLnsiYTeLyitegesge..vneeHEvlqiekasr 56 
                 t+L+siYT+Ly  e ++      ++H v+ +e+ ++
  CCE29321.1 657 THLKSIYTQLYDYESDTHFrqAARDHGVRLMENLMS 692
                 89************9986544899*******98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4876.49
//
Query:       CCE29322.1  [L=222]
Description: uncharacterized protein CPUR_03015 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1716.89
//
Query:       CCE29323.1  [L=491]
Description: uncharacterized protein CPUR_03016 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-05   25.2   0.2      4e-05   23.4   0.2    2.0  1  F-box-like  F-box-like
  ------ inclusion threshold ------
      0.017   14.9   0.2       0.03   14.1   0.2    1.3  1  ANTAR       ANTAR domain
        5.5    7.6  13.3         50    4.5   0.3    6.3  6  LRR_4       Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.2   6.7e-09     4e-05       4      46 ..      11      55 ..       9      57 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 6.7e-09
  F-box-like  4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrlv 46
                LP E+ +qIFsyL+  ++l + +V+++W     ++  + LWr ++
  CCE29323.1 11 LPAELVMQIFSYLKCDEMLYGLRVSKQWTCTLTSPmyAPLWRDMT 55
                9***************************87765655556777665 PP

>> ANTAR  ANTAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   5.1e-06      0.03      29      50 ..     459     480 ..     452     481 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.1e-06
                 HHHHHHHHHHHCTTTS-HHHHH CS
       ANTAR  29 deAfrlLrklSmdsnvklrevA 50 
                 deAf++Lr+++++++v+l e+ 
  CCE29323.1 459 DEAFAQLRQAARNQGVRLMEMS 480
                 9*****************9876 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.4      0.19   1.1e+03      21      30 ..     107     116 ..      93     121 .. 0.77
   2 ?   -0.1   0.0      0.23   1.4e+03      23      30 ..     166     173 ..     159     179 .. 0.69
   3 ?    4.5   0.3    0.0083        50      19      30 ..     187     198 ..     166     204 .. 0.68
   4 ?    1.8   0.1     0.059   3.5e+02      21      32 ..     217     227 ..     208     239 .. 0.66
   5 ?   -0.5   0.2      0.32   1.9e+03      25      33 ..     279     286 ..     250     292 .. 0.61
   6 ?    2.5   0.0     0.035   2.1e+02      21      31 ..     417     427 ..     410     435 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.19
                 H-TT--EEE- CS
       LRR_4  21 klpnLkeLdL 30 
                 +l++L+ LdL
  CCE29323.1 107 SLKHLEFLDL 116
                 3888888887 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.23
                 TT--EEE- CS
       LRR_4  23 pnLkeLdL 30 
                  +L++LdL
  CCE29323.1 166 SSLEHLDL 173
                 45666666 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0083
                 HHH-TT--EEE- CS
       LRR_4  19 leklpnLkeLdL 30 
                 +  lpnLk+L +
  CCE29323.1 187 IPHLPNLKTLRM 198
                 225*******98 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.059
                 H-TT--EEE-.- CS
       LRR_4  21 klpnLkeLdLsg 32 
                  +pnL++L + g
  CCE29323.1 217 AFPNLEQLFI-G 227
                 49******99.4 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.32
                 --EEE-.-S CS
       LRR_4  25 LkeLdLsgN 33 
                 L+ L++ gN
  CCE29323.1 279 LTCLNC-GN 286
                 555666.55 PP

  == domain 6  score: 2.5 bits;  conditional E-value: 0.035
                 H-TT--EEE-. CS
       LRR_4  21 klpnLkeLdLs 31 
                  +pnL++L+++
  CCE29323.1 417 TFPNLRTLSIW 427
                 499*****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3613.61
//
Query:       CCE29324.1  [L=332]
Description: uncharacterized protein CPUR_03017 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-08   34.1   1.0    6.6e-07   29.1   0.2    2.4  2  F-box-like  F-box-like
    2.3e-06   27.3   1.3    0.00012   21.8   0.0    2.4  2  F-box       F-box domain
     0.0068   17.1   3.5      0.032   15.0   0.2    3.0  4  TPR_14      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.031   14.1   8.6      0.098   12.5   0.1    3.2  4  TPR_1       Tetratricopeptide repeat
      0.041   14.0   6.6       0.68   10.2   0.2    2.9  3  TPR_2       Tetratricopeptide repeat
      0.062   13.5   1.1       0.24   11.6   0.2    2.3  3  TPR_9       Tetratricopeptide repeat
      0.078   13.1   0.3       0.48   10.5   0.0    2.2  2  MIT         MIT (microtubule interacting and transport) domai


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.031        79      23      43 ..      56      76 ..      45      79 .. 0.86
   2 !   29.1   0.2   2.6e-10   6.6e-07       2      47 ..     197     244 ..     196     245 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.031
  F-box-like 23 rlalVCrrWrrvaldtplLWr 43
                r++++C+++  va+   +++ 
  CCE29324.1 56 RCRCTCKSFGVVANYQESIYE 76
                899******999988778775 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 2.6e-10
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrlvl 47 
                 ++LP Ei  +IF+ L++ +++ + +V+++W+r   ++  + LWr +++
  CCE29324.1 197 LYLPGEIVTHIFRNLELDEIIDCLQVSKQWARTLTSPvhAPLWRDMTF 244
                 58******************************9977666789998776 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.7     0.026        68      18      33 ..      47      64 ..      45      67 .. 0.80
   2 !   21.8   0.0   4.7e-08   0.00012       6      40 ..     199     233 ..     195     236 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.026
                S-HHH..HHHHCTT-HHH CS
       F-box 18 Lplsd..llalrrVSkgw 33
                L++++  + ++r+++k++
  CCE29324.1 47 LCPCTggIKRCRCTCKSF 64
                6666666789******97 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 4.7e-08
                 S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box   6 LPsevlrhILerLplsdllalrrVSkgwrilidsd 40 
                 LP e++ hI+++L+l +++ + +VSk w + + s+
  CCE29324.1 199 LPGEIVTHIFRNLELDEIIDCLQVSKQWARTLTSP 233
                 9***************************9988776 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.27     7e+02      13      32 ..      30      49 ..      20      56 .. 0.81
   2 !   15.0   0.2   1.2e-05     0.032       2      38 ..     100     136 ..      99     142 .. 0.89
   3 ?   -3.1   0.1         7   1.8e+04       6      40 ..     153     158 ..     143     166 .. 0.53
   4 ?   -2.7   0.0       6.5   1.7e+04      14      27 ..     177     190 ..     176     196 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.27
      TPR_14 13 alGdpdeAiallrralalaP 32
                 ++++++A++l+  a +l+P
  CCE29324.1 30 KARNYKRALKLFTNAMRLCP 49
                47899999999999988887 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.2e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeaw 38 
                 eal ++a+ ++alG++d A++ ++++l+laP+ ++ +
  CCE29324.1 100 EALELRAATFAALGQLDNAMKDAEWILELAPQLPDGY 136
                 688899*************************987665 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 7
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawll 40 
                 ++                             aw +
  CCE29324.1 153 EY-----------------------------AWQM 158
                 22.............................3333 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 6.5
      TPR_14  14 lGdpdeAiallrra 27 
                 l+++ +A++ l+r+
  CCE29324.1 177 LQQLYDARKPLNRL 190
                 57888999998886 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0036       9.2      13      32 ..      30      49 ..      26      49 .. 0.90
   2 ?   -2.4   0.1       1.9     5e+03      16      26 ..      74      84 ..      68      86 .. 0.67
   3 ?   12.5   0.1   3.8e-05     0.098       2      33 ..     100     131 ..      99     132 .. 0.91
   4 ?   -2.8   0.1       2.6   6.7e+03       3      21 ..     135     153 ..     133     157 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0036
                HTT-HHHHHHHHHHHHHHST CS
       TPR_1 13 klgkydeAleyyekALelnP 32
                k  +y+ Al+ +  A +l+P
  CCE29324.1 30 KARNYKRALKLFTNAMRLCP 49
                7789***********99998 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.9
                -HHHHHHHHHH CS
       TPR_1 16 kydeAleyyek 26
                 y+eA   ++ 
  CCE29324.1 74 IYEEAMYTCNC 84
                58898877765 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 +al  +++++  lg++d A ++ e  Lel P+
  CCE29324.1 100 EALELRAATFAALGQLDNAMKDAEWILELAPQ 131
                 577789************************96 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHTT-HHHHH CS
       TPR_1   3 alynlGnayfklgkydeAl 21 
                  +   Gn+ +  + +d A+
  CCE29324.1 135 GYLCVGNIAQLHKAHDYAE 153
                 5666677777777777776 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00027      0.68      13      32 ..      30      49 ..      23      49 .. 0.91
   2 ?    6.8   0.3    0.0032       8.1       2      33 ..     100     131 ..      99     132 .. 0.91
   3 ?   -3.3   0.1       5.8   1.5e+04      18      24 ..     146     152 ..     135     156 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00027
       TPR_2 13 klgdyeeAleafekAleldP 32
                k+ +y++Al++f  A +l+P
  CCE29324.1 30 KARNYKRALKLFTNAMRLCP 49
                789***************99 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0032
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 eal  ++   ++lg+++ A ++ e  lel+P+
  CCE29324.1 100 EALELRAATFAALGQLDNAMKDAEWILELAPQ 131
                 79999*****************9999999986 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.8
       TPR_2  18 eeAleaf 24 
                  +A+++ 
  CCE29324.1 146 HKAHDYA 152
                 3444443 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.4   6.3e+03      41      60 ..      30      49 ..      24      54 .. 0.75
   2 ?   11.6   0.2   9.4e-05      0.24      25      64 ..      95     134 ..      91     137 .. 0.94
   3 ?   -1.9   0.0       1.5   3.8e+03      23      34 ..     230     241 ..     214     242 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.4
       TPR_9 41 qlGclsaAladLeaylalap 60
                +  +++ Al+ +  +++l+p
  CCE29324.1 30 KARNYKRALKLFTNAMRLCP 49
                55677788888888888887 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 9.4e-05
       TPR_9  25 aPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 +P+++e +  R+   a lG+l  A++d e+ l+lap+ pd
  CCE29324.1  95 NPHHIEALELRAATFAALGQLDNAMKDAEWILELAPQLPD 134
                 79**********************************9887 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.5
       TPR_9  23 llaPddpeerrd 34 
                 l  P ++ ++rd
  CCE29324.1 230 LTSPVHAPLWRD 241
                 456788888887 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00019      0.48      11      33 ..      25      47 ..      24      49 .. 0.93
   2 ?   -0.6   0.1      0.55   1.4e+03      16      32 ..     147     164 ..     143     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00019
         MIT 11 AveeDnagnyeeAlelYkealel 33
                Av+e +a ny+ Al+l+++a++l
  CCE29324.1 25 AVKEQKARNYKRALKLFTNAMRL 47
                9*******************986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.55
         MIT  16 nagnyee.AlelYkeale 32 
                 +a++y+e A ++Y+ ++e
  CCE29324.1 147 KAHDYAEyAWQMYTAGIE 164
                 566776669999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2446.72
//
Query:       CCE29325.1  [L=489]
Description: uncharacterized protein CPUR_03018 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00086   19.5   0.0       0.47   10.8   0.0    2.5  2  Retrotrans_gag  Retrotransposon gag protein


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   2.6e-05      0.47       2      95 ..      52     171 ..      51     172 .. 0.79
   2 !    6.2   0.0   0.00072        13      25      57 ..     440     475 ..     419     483 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.6e-05
  Retrotrans_gag   2 lastslegaAkswlk.slvarsida........sesWkdlkkaflktflpserkdqleeels...slrQ.gtesvreYvtrfktladqlde..vl 81 
                     ++ ++l+g+A+  ++ s++ rsi +         +  +dl++ f  ++ p    +++++ ++   ++rQ + e ++ Y++r   + +++    + 
      CCE29325.1  52 MFELALDGDAAVFAEtSFQVRSIMNqaskgvasDKDLDDLQRTFSVRYPP--AAEEKKTVIWadiDVRQaEGEDLTGYFNRVLNFYQRAGGqqK- 143
                     66677777776665514455666667788888888999************..556666667755579***************999999998643. PP

  Retrotrans_gag  82 te...............eakiekflaGLn 95 
                                      ++ i+kf++GL+
      CCE29325.1 144 -SttsleslsppelfmlHQFISKFIRGLH 171
                     .1468***********************7 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00072
  Retrotrans_gag  25 a...sesWkdlkkaflktflpserkdqleeelsslr 57 
                     a   se+W+  +ka+ ++flpse ++++ e + ++ 
      CCE29325.1 440 AralSEIWAFVSKAVITNFLPSEAHEKKVEAIDDVL 475
                     135699*****************9999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3861.60
//
Query:       CCE29326.1  [L=688]
Description: uncharacterized protein CPUR_03019 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.5   0.6        4.6    7.8   0.0    4.4  6  LRR_4     Leucine Rich repeats (2 copies)
      0.028   14.1   0.6        1.5    8.6   0.1    2.4  2  TPR_11    TPR repeat
      0.036   14.9   0.4          2    9.5   0.1    3.0  2  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.7     1e+04      21      30 ..     266     275 ..     254     295 .. 0.76
   2 ?   -2.4   0.2       1.3   7.5e+03      21      30 ..     289     299 ..     268     303 .. 0.60
   3 ?    1.6   0.0     0.069   4.1e+02      16      31 ..     350     362 ..     345     366 .. 0.78
   4 ?   -4.0   0.0         3   1.8e+04      22      30 ..     383     391 ..     379     392 .. 0.76
   5 ?   -1.1   0.0      0.49   2.9e+03       1      37 [.     415     454 ..     415     459 .. 0.67
   6 ?    7.8   0.0   0.00077       4.6      21      39 ..     595     612 ..     587     617 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.7
                 H-TT--EEE- CS
       LRR_4  21 klpnLkeLdL 30 
                   p L++L +
  CCE29326.1 266 ESPCLEYLKI 275
                 4678888876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
                 H.-TT--EEE- CS
       LRR_4  21 k.lpnLkeLdL 30 
                 k l +L +L+L
  CCE29326.1 289 KtLNKLSYLSL 299
                 44777777777 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.069
                 -S-HHH-TT--EEE-. CS
       LRR_4  16 iplleklpnLkeLdLs 31 
                 ip+   lp+Lk+L ++
  CCE29326.1 350 IPF---LPKLKTLRIN 362
                 444...9******994 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 3
                 -TT--EEE- CS
       LRR_4  22 lpnLkeLdL 30 
                 +p L++L +
  CCE29326.1 383 FPRLEQLFI 391
                 789999976 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.49
                 SS--EEE--SS---E-S-HHH-TT..--EEE-..-S---- CS
       LRR_4   1 pnLevLdLsnNqltdiplleklpn..LkeLdL.sgNnlit 37 
                 p+L+vL +  N+  d ++  k++   L+ L++ ++ n ++
  CCE29326.1 415 PHLKVLIFEINHFEDPGFYTKMTRsaLRCLTCvNRGNSLE 454
                 5788888886688885556678888888898854434544 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.00077
                 H-TT--EEE-.-S-----G CS
       LRR_4  21 klpnLkeLdLsgNnlitdl 39 
                 ++pnL++L++ g+nl+++ 
  CCE29326.1 595 SFPNLRTLSV-GCNLLNKM 612
                 59********.99999876 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00025       1.5       1      25 [.      17      41 ..      17      42 .. 0.91
   2 ?    3.5   0.0    0.0095        57      21      37 ..     120     136 ..     120     140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00025
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldP 25
                G+ y++  +y  A+++Y +A + +P
  CCE29326.1 17 GRRYVAAEEYGSALKSYLQAAESCP 41
                899*****************88655 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0095
      TPR_11  21 lkldPdnaeayynLGla 37 
                 l+l P+ ++ y+ LG++
  CCE29326.1 120 LELAPQLPDGYLRLGKI 136
                 6899***********97 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.077   4.6e+02       7      32 ..      16      41 ..      10      47 .. 0.83
   2 ?    9.5   0.1   0.00033         2       3      43 ..      95     135 ..      93     136 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.077
      TPR_14  7 laeallalGdpdeAiallrralalaP 32
                 ++ + a++++  A++ + +a + +P
  CCE29326.1 16 KGRRYVAAEEYGSALKSYLQAAESCP 41
                578899**********9999988887 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00033
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 al  +a+ + alG++  A + ++++l+laP+ ++ +l+l++
  CCE29326.1  95 ALDGRAATFQALGRFSCATRDAEWILELAPQLPDGYLRLGK 135
                 7788999********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 5149.67
//
Query:       CCE29327.1  [L=209]
Description: uncharacterized protein CPUR_03020 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-60  203.5   3.3    3.3e-60  203.3   3.3    1.0  1  BCAS2           Breast carcinoma amplified sequence 2 (BCAS2)
     0.0068   16.6   3.3     0.0068   16.6   3.3    1.9  1  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
  ------ inclusion threshold ------
      0.044   13.1   0.0      0.065   12.5   0.0    1.2  1  Vps54_N         Vacuolar-sorting protein 54, of GARP complex
      0.067   12.5   1.5      0.095   12.0   1.5    1.2  1  DUF4407         Domain of unknown function (DUF4407)
      0.081   13.0   2.7       0.76    9.9   0.7    2.3  2  COG2            COG (conserved oligomeric Golgi) complex comp
       0.36   10.8   6.8        2.3    8.2   6.8    2.1  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
       0.59   10.5   6.1       0.31   11.4   1.3    2.1  2  Uso1_p115_C     Uso1 / p115 like vesicle tethering protein, C
        1.8    9.0   4.4        1.8    9.0   0.4    2.9  3  FlaC_arch       Flagella accessory protein C (FlaC)
        3.9    7.5  10.1        6.4    6.8  10.1    1.4  1  PRIMA1          Proline-rich membrane anchor 1
        4.2    7.7   9.9       0.23   11.7   1.4    2.7  3  ABC_tran_CTD    ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> BCAS2  Breast carcinoma amplified sequence 2 (BCAS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.3   3.3   1.9e-63   3.3e-60       2     205 ..       7     207 ..       6     208 .. 0.96

  Alignments for each domain:
  == domain 1  score: 203.3 bits;  conditional E-value: 1.9e-63
       BCAS2   2 vvDaLPYiDaeletpelreaveklieeElrrsrkkksd.laelPppkeeklespllaaeleRveageplealDlsRYeleaPsaekkedleaweealrn 99 
                 ++++LPYiD+ + +++  e+++ li++ l+++++++    ++ Pp +  k+ sp++++el+R+++++pl++lD++RYe++  s ++++++e++e++l++
  CCE29327.1   7 YHESLPYIDPAP-SAQYLETAKLLIQQALSSTQPPPPPpPPQSPPSP--KF-SPAITTELSRIASSTPLPPLDTTRYEVQDLSPNAQSSTEQLEAVLSK 101
                 69**********.*******************999986556666655..9*.**************************99999999************* PP

       BCAS2 100 akaqlehqalRqeNleLlekygknaWrvhneqleaelkklekeleetkeeieevnrqRkseQeeageeLksleekWrelvsknleieaaceeleaeiee 198
                 a+++++++++R+eNl+Ll+k+g+naW+++n++le+el++le el++tk++i+evn+ R ++Qe++++eL+sle++Wr++v+++le+e+a+e+l+ae++e
  CCE29327.1 102 AYTSHAYLESRIENLTLLDKHGANAWLLSNYHLESELRRLEGELAHTKRQIDEVNALRARRQEDVKGELESLESTWRKGVGRVLETEIAVEALRAEVRE 200
                 *************************************************************************************************99 PP

       BCAS2 199 lkrqaae 205
                 + r+++e
  CCE29327.1 201 ELRRQSE 207
                 9998876 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   3.3   3.8e-06    0.0068      16      76 ..     133     194 ..     118     208 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.8e-06
  TMF_TATA_bd  16 rlsseirrlEgElaslkeelerleaerdeareeivklmkeneel.kelkkeleelekeleel 76 
                  +l+se+rrlEgEla++k+++ +++a r + +e++   +++ e++ ++  +++ e+e  +e+l
   CCE29327.1 133 HLESELRRLEGELAHTKRQIDEVNALRARRQEDVKGELESLESTwRKGVGRVLETEIAVEAL 194
                  699************************99999987777666654145555555555555555 PP

>> Vps54_N  Vacuolar-sorting protein 54, of GARP complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.6e-05     0.065      14      93 ..      75     155 ..      72     163 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.6e-05
     Vps54_N  14 dpikyeLkklpdde.lsyesiekevkklksqhdvvskklsqlilekreefvkelseveeiekelkesvvickngrraLdla 93 
                 d+++ye + l+++   s e++e+   k  + h ++++++ +l l  ++  ++ l   + +e+el++   + ++++r++d  
  CCE29327.1  75 DTTRYEVQDLSPNAqSSTEQLEAVLSKAYTSHAYLESRIENLTLLDKHGANAWLLSNYHLESELRRLEGELAHTKRQIDEV 155
                 9*********999889999*************************999999999999999*****99999999999998865 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.5   5.3e-05     0.095     130     205 ..     106     205 ..      75     208 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-05
     DUF4407 130 a...........................ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelae 201
                 +                           l++el++le ++a  +++id+ +a +++ +++++ el+   +   t ++G g + ++  a  + + +  +e
  CCE29327.1 106 HaylesrienltlldkhganawllsnyhLESELRRLEGELAHTKRQIDEVNALRARRQEDVKGELESLES---TWRKGVGRVLETEIAVEALRAEVREE 201
                 15555555555666666666777777889*************************************6444...45999999999987777777777777 PP

     DUF4407 202 lkak 205
                 l+++
  CCE29327.1 202 LRRQ 205
                 7776 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.062   1.1e+02      68     112 ..      78     122 ..      73     133 .. 0.81
   2 ?    9.9   0.7   0.00042      0.76      67     109 ..     134     176 ..     128     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.062
        COG2  68 qeeleevesplaaarkkvesvreklsereeeveskleeakeleek 112
                 + e++ ++ + ++ ++++e+v +k    ++ +es++e+ + l ++
  CCE29327.1  78 RYEVQDLSPNAQSSTEQLEAVLSKAYTSHAYLESRIENLTLLDKH 122
                 557888899999999999999999999999999999999888776 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00042
        COG2  67 lqeeleevesplaaarkkvesvreklsereeeveskleeakel 109
                 l++el+++e +la++++++++v++  ++r+e+v+++le  ++ 
  CCE29327.1 134 LESELRRLEGELAHTKRQIDEVNALRARRQEDVKGELESLEST 176
                 689**********************************988775 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.8    0.0013       2.3      63     116 ..     133     188 ..      74     208 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0013
  CENP-F_leu_zip  63 elaeelreleldLvalrsekeeLekelqkkqervs.eLeslnsslenllee.kEqe 116
                     +l++elr+le +L++++++ +e++      qe v+ eLesl+s+ ++ + + +E e
      CCE29327.1 133 HLESELRRLEGELAHTKRQIDEVNALRARRQEDVKgELESLESTWRKGVGRvLETE 188
                     57788889999999999999998888888888887688888888888775513444 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.6    0.0024       4.2       6      85 ..      88     173 ..      76     173 .. 0.74
   2 ?   11.4   1.3   0.00018      0.31      19      77 ..     133     207 ..     127     208 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0024
  Uso1_p115_C   6 leseaaslkdeneklkaelqslskalesleqk..eakkaaesqakeleaenkklekeleklraelkeekekekek....qkEldDL 85 
                  ++s++++l+ + +k+ ++   l++++e+l     +  +a    + +le+e  +le el  ++ +++e +          + El+ L
   CCE29327.1  88 AQSSTEQLEAVLSKAYTSHAYLESRIENLTLLdkHGANAWLLSNYHLESELRRLEGELAHTKRQIDEVNALRARRqedvKGELESL 173
                  67888888888888888888888888887776434445556689999*********999999999987654432234567777765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00018
  Uso1_p115_C  19 klkaelqslskalesleqk..eakkaaesqakeleaenkklek..............eleklraelkeekekeke 77 
                   l++el+ l+ +l  ++++  e ++  + ++++++ e ++le+              ++e+lrae++ee  +++e
   CCE29327.1 133 HLESELRRLEGELAHTKRQidEVNALRARRQEDVKGELESLEStwrkgvgrvleteiAVEALRAEVREELRRQSE 207
                  456666666666666666654444445556666777777777777778888888999***********9888764 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.78   1.4e+03      35      36 ..      93      94 ..      58     116 .. 0.56
   2 ?    9.0   0.4     0.001       1.8       5      27 ..     134     156 ..     132     179 .. 0.90
   3 ?   -2.8   0.1       5.1   9.1e+03      15      23 ..     190     198 ..     183     207 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.78
   FlaC_arch 35 en 36
                e+
  CCE29327.1 93 EQ 94
                33 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.001
   FlaC_arch   5 lEnklsklsteletvkkeneels 27 
                 lE++l +l+ el+  k++++e++
  CCE29327.1 134 LESELRRLEGELAHTKRQIDEVN 156
                 9*******************997 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.1
   FlaC_arch  15 eletvkken 23 
                  +e +++e 
  CCE29327.1 190 AVEALRAEV 198
                 444555543 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  10.1    0.0035       6.4      17      42 ..      30      55 ..      17      76 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0035
      PRIMA1 17 cqeacqcrrypplpppppppppprll 42
                +q+a    ++pp pppp+ pp+p++ 
  CCE29327.1 30 IQQALSSTQPPPPPPPPQSPPSPKFS 55
                567777788999999999*****974 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.26   4.7e+02       7      29 ..      89     111 ..      80     124 .. 0.57
   2 ?   11.7   1.4   0.00013      0.23      20      64 ..     134     177 ..     132     179 .. 0.91
   3 ?   -2.8   0.3       4.3   7.7e+03      51      54 ..     196     199 ..     185     208 .. 0.46

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.26
  ABC_tran_CTD   7 qreleeleaeIeaLEeeiaelea 29 
                   q   e+lea + +  +  a le 
    CCE29327.1  89 QSSTEQLEAVLSKAYTSHAYLES 111
                   44445555554444444444444 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00013
  ABC_tran_CTD  20 LEeeiaeleaeladpelysdpeklaelsae.leeleaeLeelyerW 64 
                   LE e+  le ela+     + +++++l a+ +e+++ eLe l++ W
    CCE29327.1 134 LESELRRLEGELAHTK--RQIDEVNALRARrQEDVKGELESLESTW 177
                   9************997..77799***99987999************ PP

  == domain 3  score: -2.8 bits;  conditional E-value: 4.3
  ABC_tran_CTD  51 eele 54 
                   +e++
    CCE29327.1 196 AEVR 199
                   2333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1075  (0.0599587); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 1608.34
//
Query:       CCE29328.1  [L=379]
Description: probable CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN (mcb) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-36  124.6   0.0    5.7e-19   68.0   0.0    2.3  2  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   5.5e-19   9.9e-15       6      88 ..     143     233 ..     142     234 .. 0.86
   2 !   68.0   0.0   3.2e-23   5.7e-19       2      86 ..     270     351 ..     269     352 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 5.5e-19
                   TT-EEE-TTSB-SEEEEEEES-EEEE.......EEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESST.EEEEEEEHHHHHHHHHH CS
  cNMP_binding   6 agevifrqGdpadslyivlsGevrvy.......rlsedgkevvlavlgpGdlfGelalltgeprtatvvAltd.sellalprddflellqq 88 
                   +g  ++ qGd++d +y+v++G++ v        +  +dg    ++ +++G  fGelal++++pr+atvv+ +  ++l+al+r +f+++l++
    CCE29328.1 143 KGIKVISQGDAGDFFYVVEKGSFDVHvnasgsiQPGADGLGDHVGNIQAGGSFGELALMYNAPRAATVVSAEAsCTLWALDRITFRRILME 233
                   67779********************7455555544445555589999********************9999888**************997 PP

  == domain 2  score: 68.0 bits;  conditional E-value: 3.2e-23
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHH CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflell 86 
                   +++ ag++i+++Gd ++s+y+++sGe+  ++ +++     + ++++Gd+fGelall+++pr+a++ A +d+++++l +++f++ll
    CCE29328.1 270 QKYVAGDIIIKEGDLGKSFYLLESGEADAFKGDPSH---KVLHYKKGDYFGELALLNDKPRAASIMASSDVKVASLGKNAFQRLL 351
                   7899*************************7555555...45569**************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2866.58
//
Query:       CCE29329.1  [L=443]
Description: related to transcriptional coactivator HFI1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-59  201.8   0.0    1.7e-59  201.4   0.0    1.1  1  SAGA-Tad1  Transcriptional regulator of RNA polII, SAGA, subu


Domain annotation for each model (and alignments):
>> SAGA-Tad1  Transcriptional regulator of RNA polII, SAGA, subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.4   0.0   9.5e-64   1.7e-59       3     234 ..      44     279 ..      42     280 .. 0.86

  Alignments for each domain:
  == domain 1  score: 201.4 bits;  conditional E-value: 9.5e-64
   SAGA-Tad1   3 nsRidleelkeqlkkkLgperwekYfellsrFlsgklskkEldklvdriLgre...nlhLHNqLllsIlkNalrespd.clakt....p.psatakkkk 92 
                 ++Ridle++++ lk+++g erw  Y+e++ +Fl+g+ls++E+ +++d+iL      ++hLHNqLl++Il N++re+pd + a++    + p+at+    
  CCE29329.1  44 PARIDLEPVYSTLKSAIGGERWPFYKESTAEFLIGRLSQAEYIDRIDAILADHngeKEHLHNQLLAAILGNVTREMPDqGPAPWvsanDkPAATP---- 138
                 68************************************************9888889**********************9999965553344443.... PP

   SAGA-Tad1  93 sslkkspkksrsgdsqeerlkkrvmslpprdrkrlkaitkeag........vlaeesskpkisvvseeetekrekennskewsqeirspvaaPLgsesg 183
                        +k ++gd++e++lk +vm+lpprdr+r+k+i ++          +++e + kp++ +  +++t++ + +    ++++e+r+++a+PL++esg
  CCE29329.1 139 ------GSKPVTGDATERKLKGEVMQLPPRDRRRIKDILHNDYdhleslsnIFTEVHRKPSTTIDMNPNTAAGIHNM---NIDVEVRKRFAQPLAVESG 228
                 ......44569***************************887555444444322333555556666666666555433...788**************** PP

   SAGA-Tad1 184 elpdtdsLrkRmekiaeeeGLvggvsadcaellnlaldvyLKnliescidl 234
                 e+pd+  ++ Rm ++++e GL++g++ad+ +l+ +a++ ++K+++++++++
  CCE29329.1 229 EFPDVGVISGRMLPFCYETGLSSGHAADAPQLVTVATEIFIKEVLTQIVSR 279
                 ***********************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3290.92
//
Query:       CCE29330.1  [L=950]
Description: related to GCP3 (gamma-tubulin complex) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-98  329.9   0.7    4.5e-98  328.5   0.7    1.8  1  GCP_C_terminal  Gamma tubulin complex component C-terminal
    3.6e-82  276.4   0.0    1.1e-81  274.8   0.0    1.8  2  GCP_N_terminal  Gamma tubulin complex component N-terminal


Domain annotation for each model (and alignments):
>> GCP_C_terminal  Gamma tubulin complex component C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.5   0.7    5e-102   4.5e-98       1     309 []     539     916 ..     539     916 .. 0.98

  Alignments for each domain:
  == domain 1  score: 328.5 bits;  conditional E-value: 5e-102
  GCP_C_terminal   1 LlehLkllkrylLlgqgdFisrLldalfdelwkpasselrlaLtslLeeairssnaqqsdelkddlsfaldlpevleeldakldpdsle..gldf 93 
                     L+ehLk+lk+y+LlgqgdFi++L+++l+++l+kpa+ ++r++Lt++Le+a+r+snaq+            d+ evl++lda++ ++s++  g+d+
      CCE29330.1 539 LFEHLKALKDYILLGQGDFIALLMESLAANLDKPAGVQYRHTLTAQLEHAVRGSNAQY------------DSAEVLRRLDARMLQLSHGdmGWDC 621
                     89******************************************************99............************************* PP

  GCP_C_terminal  94 ltLeYkvpwplslvitpealekYqriFrfLlrvkrvefalsslwkrrkatgarsvl..........lkrarllrqemlhfvsqlqyYvldevies 178
                     +tLeYk+++p+++v+t +  ++Y+++F+fL+r+krvefal s+w r+++tgar+vl          +k++r +++em+hfv qlqyY+l+evies
      CCE29330.1 622 FTLEYKIDAPVDVVVTDWGNRQYLKVFNFLWRIKRVEFALLSTW-RKCMTGARGVLqnpdpvvmqaWKSTRGVLAEMIHFVGQLQYYILFEVIES 715
                     ********************************************.********999999************************************ PP

  GCP_C_terminal 179 sWreleekl.kkeatdldelieaHeafLdsilkkclLrskk.........................kllklleeilelileFakvldgly.lsvs 246
                     sW+el++++ k+++t ld+li+aH+++L++i++k+lL+ k+                          +l++l++il l+l+++k++dgly +svs
      CCE29330.1 716 SWDELQKRIhKEDCT-LDDLINAHKRYLNDITHKGLLGAKRrhhhhqqqhgggadeeeargassssWYLDQLSDILLLMLDYRKSVDGLYsWSVS 809
                     *********888888.***********************96699********************99999************************** PP

  GCP_C_terminal 247 elt.................................................aeeaeeeeleekleerleelekeFrkkvslllkvlralkeqee 292
                     ++t                                                 a + +++e++  l++rl++l ++F++ v++ll++l a+  q+ 
      CCE29330.1 810 DFTrkqeahvrtstkmnhqhnqhqhqhqqsideqytsgsgtggiggvpglssAGAGVSSEFPL-LQDRLHQLGASFKASVQILLGDL-AY--QP- 899
                     **************************************************9977777888888.99*********************.88..89. PP

  GCP_C_terminal 293 dedlrqLllrLdfnefY 309
                     ++d+r+L++ ++fn++Y
      CCE29330.1 900 NVDMRFLGVAMNFNDVY 916
                     9**************99 PP

>> GCP_N_terminal  Gamma tubulin complex component N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.8   0.0   1.3e-85   1.1e-81       1     306 []     231     536 ..     231     536 .. 0.97
   2 ?   -2.5   0.2      0.33     3e+03     263     293 ..     815     845 ..     794     848 .. 0.63

  Alignments for each domain:
  == domain 1  score: 274.8 bits;  conditional E-value: 1.3e-85
  GCP_N_terminal   1 lrdllylLqGisgklirfdekddervvkdvrlpgllppslrslverllelgtlyrrlrkfveevsrsesglvlqalaaaldeelteyyrliaqlE 95 
                     lrdl ++LqG+s++ + f++ d+      +rlp ++p +l s++++l+e + lyr l++++++   + +gl+ q+l+aa+  el++y+ lia+lE
      CCE29330.1 231 LRDLPFTLQGLSSTTLPFSKPDT------LRLPPTVPLPLISILHTLAEPALLYRGLDDYCNT---PARGLLGQSLRAAIGSELRSYLSLIATLE 316
                     89******************999......********************************99...***************************** PP

  GCP_N_terminal  96 sqlledsesi.............ltLlrlevwlqetllllrvLanlveevekanlkggallsllhe.aaqhgdpkvrkllsellervsrpfleml 176
                      q++++ +s              +tL+r++vw++e ++ lr+++ +++e+e  n+ gg+l+sl+h+ +++hgdp v+ ++++ll + ++pf+++l
      CCE29330.1 317 GQIRRALSSLdenaprggigkagVTLKRCVVWTREATMGLRLMSLIAQESE--NKAGGQLISLIHSfSSSHGDPVVAAFAERLLGSFTKPFYDIL 409
                     ******99889****************************************..888**********9999************************* PP

  GCP_N_terminal 177 ekWileGelsDpynEfFveenesvakeklked.....dseklweekYtlrkemlPsflseelaekIletGkslnflrescgdsewiektes..ee 264
                     ++Wi++GelsDpy+EfFv+e+  +++ +++e+        ++w++kY++   m+Ps++++++a+k++++Gkslnf+r+sc+ds w+e  +s  ++
      CCE29330.1 410 RHWIYDGELSDPYQEFFVREQYGKKQADMPERskgsaGTGNVWTDKYEIEDTMIPSIMTHDFAQKVFLIGKSLNFIRHSCADSAWVE-DYSkaAS 503
                     *********************999999999889****999*********************************************99.5555999 PP

  GCP_N_terminal 265 keleyiddleelssslslsleelidsayklaskrllelLfke 306
                     kel+y+d++          le++id+ayk+++krl++l+ ++
      CCE29330.1 504 KELRYGDTAT---------LEAWIDEAYKTTMKRLMDLMSTK 536
                     *******666.........*******************9876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.33
  GCP_N_terminal 263 eekeleyiddleelssslslsleelidsayk 293
                     +e +++ + +++ +++  +++++++id++y+
      CCE29330.1 815 QEAHVRTSTKMNHQHNQHQHQHQQSIDEQYT 845
                     2334444444445566778999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 6696.70
//
Query:       CCE29331.1  [L=158]
Description: uncharacterized protein CPUR_03024 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1175.67
//
Query:       CCE29332.1  [L=507]
Description: uncharacterized protein CPUR_03025 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-24   85.2   0.1    3.2e-24   85.2   0.1    2.4  3  CDT1_C    DNA replication factor Cdt1 C-terminal domain


Domain annotation for each model (and alignments):
>> CDT1_C  DNA replication factor Cdt1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.47   8.5e+03       4      37 ..     156     192 ..     152     199 .. 0.56
   2 ?   -3.8   0.4         1   1.8e+04       7      19 ..     353     365 ..     349     370 .. 0.60
   3 !   85.2   0.1   1.8e-28   3.2e-24       2      94 ..     380     477 ..     379     479 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.47
      CDT1_C   4 erIraKearqa...laamtreeelerrsallgrlpdv 37 
                 +r++a + r      +++   ++  +++ l+g l+++
  CCE29332.1 156 QRVKATQTRLDaiyNKKAHPAAARAEEKLLFGDLAEL 192
                 5666666665555533333344444444555666665 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1
      CDT1_C   7 raKearqalaamt 19 
                  aK ++q++++ +
  CCE29332.1 353 AAKRQEQQQKQTV 365
                 5666666655544 PP

  == domain 3  score: 85.2 bits;  conditional E-value: 1.8e-28
      CDT1_C   2 llerIraKearqa.laamtreeelerrsallgrlpdvarilrllf....vaekksalpmeevvkklkdSlrtpvskeeaekhlrlLa.elaPdWvtivk 94 
                 ll+rIr K++++a ++++++ +el+rr+al +r++dva+++++l     +a  ++a++m ++++klkdSlr p+s+eea++++rl+a e+aPdW++iv 
  CCE29332.1 380 LLDRIRHKQLAKAnEPLPPSGPELQRRAAL-NRVADVAATISMLSlsnpMASPRQAFTMMAIADKLKDSLRVPLSNEEAMSCVRLIAtEIAPDWLRIVF 477
                 9********99996777*************.9****************9999********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3547.05
//
Query:       CCE29333.1  [L=710]
Description: uncharacterized protein CPUR_03026 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.8e-195  648.8   0.1     6e-194  645.4   0.1    2.0  1  DUF3405   Protein of unknown function (DUF3405)


Domain annotation for each model (and alignments):
>> DUF3405  Protein of unknown function (DUF3405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  645.4   0.1  3.4e-198    6e-194       1     516 [.     191     703 ..     191     704 .. 0.93

  Alignments for each domain:
  == domain 1  score: 645.4 bits;  conditional E-value: 3.4e-198
     DUF3405   1 cfdRfgRygpYGlgeskkegglgvgeegekegsekvweektekvdwrkvdWgelqerCleaNkeRFkeleekeakkekeakeaeekeekekeaekekke 99 
                 cfdRfgR+gpYG+g+ ++egg+g g+++ek+ s++vw++ t k+++ ++dWg++qerCl+aN++R  +          +                +++ 
  CCE29333.1 191 CFDRFGRFGPYGFGYAEAEGGAGGGQDTEKSSSDAVWAK-TGKIHYGSMDWGDAQERCLRANEHRLVQ---------PD----------------ADTG 263
                 **************************************7.**************************99.........21................1222 PP

     DUF3405 100 eeeeeekeekkkkkRtAvvlRtwtgykyteedilnlRalisElsLksGGeYevhllvhvkdeelpiwadeetyqkvleeavpeEfrglatLwsekqmes 198
                 e  +  +  k k+ R+Avv+R++t+yk+t+ +++nlRali+ElsLksGGeY+vh+l+hv d+++piwade+++q+vl+ ++p+Ef+gl+tLwse+qm +
  CCE29333.1 264 ELPQIGTMIKGKTVRQAVVVRCYTSYKWTAMAVVNLRALITELSLKSGGEYTVHILLHVLDSNIPIWADETVVQSVLDVSIPSEFHGLVTLWSEEQMLL 362
                 333445678899*************************************************************************************** PP

     DUF3405 199 lYpgleeesftr..dlevhgvyrsaflplqlFaqqhpeydyfWnwEmDvRytGhyyelldklsefakkqpRkglweRnerfYipsvhGswedFtqavek 295
                 +Ypg ++++ ++   ++++gvyr+a+lplq+Fa qhpey+yfWnwEmD+Ry+G+y+el+d+++++a++qpR  +weRner+Yips+hGsw++Ft+ v+k
  CCE29333.1 363 FYPGDFQNEQSNpsGRNIRGVYRAAHLPLQVFASQHPEYEYFWNWEMDLRYLGNYFELFDRVGRWAETQPRSLMWERNERYYIPSYHGSWDNFTNIVQK 461
                 *****9966777779************************************************************************************ PP

     DUF3405 296 qteekgektvwGpvrvkevkpl........gpkpptsee.edkyewGvgEeADlitlnpifdpeettWvlrddvtgykneteakppRraaiitasrlSr 385
                 ++ e+g+++++Gpv++++++pl         p  +++++  d +++GvgE ADlit+npif++ e++Wv+++d+ gy++ t++ ppRr +i+ta rlSr
  CCE29333.1 462 DHAESGRQAILGPVDFPGKRPLgseqsgklRPLDDNCDKgGDATQCGVGEGADLITFNPIFEVAESGWVFSNDMAGYTDVTDSVPPRRSCIVTAGRLSR 560
                 ***************9999998555554334444455553679***********************************99999**************** PP

     DUF3405 386 rLLeamheetarkkhtmfsEmvpatvALhhGlKavyaphpvyvdrkw..plealekvfnagrkgasggartsvfgkerehnlkgltwyynsefaeelyr 482
                 rLL amhee +r+++tmfsEm+pa+vALhhG+Ka+yaphp+ ++r+w   ++a+++ fn+gr+++++ +++s+f  ++eh +kg+t+y++sef++ l+r
  CCE29333.1 561 RLLLAMHEEVWRHHRTMFSEMFPASVALHHGFKAIYAPHPIALERAWipVGSAVDQGFNSGRDHSTS-GSNSPFCMKNEHVHKGSTFYFHSEFTGLLWR 658
                 ***********************************************855699**********9999.99***************************** PP

     DUF3405 483 rwlglkee.......ne..Ggeeeee..eeegrmclpsmllhpvK 516
                 rwlg  +        ++  Gg eee+  e++grmcl+sml+hp+K
  CCE29333.1 659 RWLGHPQMdgrgrngGDlrGGVEEESrpEGSGRMCLRSMLFHPIK 703
                 *******96665554115688888888999**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4868.08
//
Query:       CCE29334.1  [L=351]
Description: uncharacterized protein CPUR_03027 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2552.54
//
Query:       CCE29335.1  [L=689]
Description: related to cytochrome P450 3A7 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-45  153.6   0.0      1e-32  113.5   0.0    3.0  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0   5.7e-37     1e-32      19     378 ..      78     507 ..      63     528 .. 0.85
   2 !   35.8   0.0   2.1e-13   3.8e-09     400     437 ..     585     622 ..     576     636 .. 0.89

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 5.7e-37
                 TCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSH.STTTHHH CS
        p450  19 keelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsf.gklslee 116
                 ++  ++  ++ + ++g+++ +      vv +s++ea++++  ++ ++++         +   +  g++v++++g+ wk +R+   +t+  +  +l ++e
  CCE29335.1  78 TDSCYQLDFQRFTRHGDTLLFVSPFSIVVQVSNAEAIRQITSQREKFPKPW-----EMYTMLAMFGENVVTTEGSVWKAHRKATAATFNEKnSALVFRE 171
                 477788888999999999999999999*****************7555553.....333334689**************************7777999* PP

                 HHHHHHHHHHHHHHCCCCHCS.............EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH.................HHHHHHHHHHHHHHHH CS
        p450 117 lveeeaedlveklrkkagess.............elditellskaaldvigsilFgarfdlledek.................lselvkaveelsslls 185
                 ++ + + +   ++ ++++ s                 i+ ++++ ++++ig++ Fg r+   +++                  +   + +v++l++ll+
  CCE29335.1 172 TIVQTNGMIDSWVGRQHSGSVddkgnnfdrrdepLTTISADVTRLTINIIGYVGFGLRLLWPGQSLppgmdaaeakyasldapEGYTLCFVDTLVQLLD 270
                 *999998888888777776667899999999999999*********************88555555***************9755678899*******9 PP

                 CHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC........SCSSCSHHHHHHHHC......................TTCTC CS
        p450 186 kssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsa........kksrrdfldalllak......................kekkg 254
                 k  + ll++ +ll+++p k+ r + +a++ +  +ld+++ e+ e l+          +k+ +df+ al + +                      +    
  CCE29335.1 271 KILFLLLFPRWLLRMVPFKTARIAAAAHDNYVRYLDEMLDEKIEALKAGhpelpereDKEGMDFMGALAQCSfgglsgassstgqkgekqhdrpE---- 365
                 99988888888**********************************************66778888877777777777777777777765554441.... PP

                 T........SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHH...HCCT-H..HHHHHHHHHHHHSCSSTT CS
        p450 255 e........sklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyd...dlqklp..yldavikEtLRlhpvvpl 340
                 +          ls++e+  ++++l++aG++T+++t+ + L++La+nP +q+ l+ +id+ +gd ++ ++d    + +++  +  a+i+EtLR +p++p 
  CCE29335.1 366 RqahgianaPALSRDEILGNAFVLFLAGHETSANTIHFSLIHLATNPAAQRLLQRDIDKLVGDTDCSSWDyesLIGSMTtsVIAACINETLRVIPPTP- 463
                 13333456669******************************************************7777622245555433899**************. PP

                 EEEEESSS....CEEETT..EEE-TT-EEEEEHHHHHT-TTTSS CS
        p450 341 llpRevtk....dvvirg..ylipkGtevivnlyalhrdpevfp 378
                  +p++v+      ++i+g    +pkG+ ++vn+   h dp ++p
  CCE29335.1 464 AIPKQVSPqsdqTLSIEGreCALPKGIFILVNAIKAHEDPRHWP 507
                 *****9966655788999889**********************9 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 2.1e-13
                 TT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEE CS
        p450 400 faflPFGaGpRnCiGerlArmelklflatlLqnFevel 437
                  aflPF+ GpR C+G+r+A+++l  +l  l+q++++el
  CCE29335.1 585 GAFLPFSDGPRRCLGRRVAQVQLMTVLLVLFQRYSIEL 622
                 58**********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4692.91
//
Query:       CCE29336.1  [L=958]
Description: uncharacterized protein CPUR_03029 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (958 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 6280.06
//
Query:       CCE29337.1  [L=429]
Description: uncharacterized protein CPUR_03030 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-11   42.8   0.0    0.00082   19.9   0.0    4.0  3  Ank_2       Ankyrin repeats (3 copies)
      7e-09   35.4   0.0    7.4e-08   32.2   0.0    2.3  2  F-box-like  F-box-like
    2.1e-07   30.7   0.0        2.1    9.2   0.0    5.5  6  Ank_3       Ankyrin repeat
    6.5e-07   29.8   0.2        1.6    9.4   0.0    5.1  5  Ank_4       Ankyrin repeats (many copies)
    3.6e-06   27.2   0.7      0.058   13.9   0.1    4.8  6  Ank         Ankyrin repeat
    3.6e-05   24.0   0.0        0.2   12.0   0.0    3.9  5  Ank_5       Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.014   15.4   0.1      0.036   14.1   0.1    1.6  1  DUF4054     Protein of unknown function (DUF4054)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   4.8e-05      0.12      50      81 ..     119     154 ..      68     156 .. 0.72
   2 !   19.9   0.0   3.2e-07   0.00082      10      83 .]     200     294 ..     191     294 .. 0.71
   3 ?    5.0   0.0     0.015        38      12      50 ..     325     374 ..     319     391 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.8e-05
       Ank_2  50 d....ndgrtpLhyAarsghleivklLlekgadinl 81 
                 d    +d  t+Lh+A++ g+ ++ k Ll+ ga++++
  CCE29337.1 119 DdqivYDTSTALHFAVFLGNVRLTKTLLDMGASLTI 154
                 234447789*******99**********99999876 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 3.2e-07
       Ank_2  10 lelvklLl.eg...........adpnk.ngktaLhyAakngnlei..vklLleh....ad.....ndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 + ++klL+ +g           +   + + +++Lh+Aa    ++    + L +     +d     ++  tpLh+A rsg ++ +++ +e+gad++++d
  CCE29337.1 200 PGMCKLLMeHGagreaiifddeT---DpKVMSILHFAAADPTTNYrqWQCLFDGfreyIDepspqESQPTPLHIALRSGCTQGMQIAVESGADKEARD 294
                 44999999855445544433333...14579********877776557999984445644555546677************************99987 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.015
       Ank_2  12 lvklLl.egadpnkngktaLhyAakn......gnleivklLleh.....ad 50 
                 +++ +l  ga +n +g ++L +A++       + + i+++L+++     ad
  CCE29337.1 325 CIRKFLeLGASVNPEGDSVLVAAVQCyapypaN-HPIMRYLISFllehhAD 374
                 566677656666667889999999863343323.46788887743223544 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   2.9e-11   7.4e-08       3      44 ..      26      66 ..      24      69 .. 0.88
   2 ?    0.2   0.0      0.27   6.9e+02      34      44 ..     154     163 ..     152     165 .. 0.78

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.9e-11
  F-box-like  3 rLPdEiLlqIFsyL.ppsdLlrlalVCrrWrrvaldtplLWrr 44
                 LP E  +qI s++  +++L+rl + C  W++va+   +L++r
  CCE29337.1 26 LLPSEMKIQIMSHInTQQSLSRLGQSCQAWYEVAN--EELYKR 66
                6*************5566****************4..48**98 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.27
  F-box-like  34 valdtplLWrr 44 
                 +a+++ lLWr 
  CCE29337.1 154 IACSP-LLWRS 163
                 78776.***97 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00082       2.1       3      29 ..     127     152 ..     125     154 .. 0.91
   2 ?   -0.5   0.0       1.1   2.9e+03      13      27 ..     198     211 ..     190     213 .. 0.72
   3 ?   -0.9   0.0       1.6     4e+03       4      12 ..     228     236 ..     227     250 .. 0.81
   4 !    8.8   0.0    0.0011       2.8       4      28 ..     266     289 ..     264     292 .. 0.82
   5 ?   -2.3   0.0       4.3   1.1e+04      18      30 ..     326     337 ..     318     337 .. 0.80
   6 ?    4.4   0.0     0.029        75      17      30 ..     361     376 ..     351     377 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00082
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                  t+Lh+A+  gn+ + k Ll+ +ga +
  CCE29337.1 127 STALHFAVFLGNVRLTKTLLD-MGASL 152
                 69*******************.99986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
       Ank_3  13 gnleivkfLlenkga 27 
                  ++ ++k+L e +ga
  CCE29337.1 198 SDPGMCKLLME-HGA 211
                 455699****9.787 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.6
       Ank_3   4 tpLhlAars 12 
                 ++Lh+Aa  
  CCE29337.1 228 SILHFAAAD 236
                 79****975 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0011
       Ank_3   4 tpLhlAarsgnleivkfLlenkgad 28 
                 tpLh+A+rsg++  ++  +e  gad
  CCE29337.1 266 TPLHIALRSGCTQGMQIAVE-SGAD 289
                 9**********987777777.6666 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 4.3
       Ank_3  18 vkfLlenkgadvn 30 
                 ++ +le  ga vn
  CCE29337.1 326 IRKFLE-LGASVN 337
                 889999.999998 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.029
       Ank_3  17 i...vkfLlenkgadvn 30 
                 +   + fLle ++ad++
  CCE29337.1 361 MrylISFLLE-HHADIH 376
                 2344889999.899997 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00062       1.6       2      26 ..     127     151 ..     115     163 .. 0.75
   2 ?    1.8   0.1      0.15   3.8e+02       5      25 ..     191     211 ..     190     235 .. 0.78
   3 ?   -1.9   0.0       2.3   5.8e+03       2      10 ..     227     235 ..     226     245 .. 0.73
   4 !    8.7   0.0     0.001       2.7       3      43 ..     266     305 ..     264     311 .. 0.91
   5 ?    2.9   0.0     0.069   1.8e+02       7      36 ..     351     383 ..     340     387 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00062
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgad 26 
                 +taLh a+  g+++l + Ll+ ga+
  CCE29337.1 127 STALHFAVFLGNVRLTKTLLDMGAS 151
                 5677777777777777777766665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.15
       Ank_4   5 LhyaaisgrlelvrlLlekga 25 
                 ++ a+ +++  +++lL e+ga
  CCE29337.1 191 IFLAFLQSDPGMCKLLMEHGA 211
                 788888999999999999986 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.3
       Ank_4   2 ltaLhyaai 10 
                 +++Lh aa+
  CCE29337.1 227 MSILHFAAA 235
                 566676665 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.001
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAa 43 
                 t+Lh a  sg+++  ++ +e+gad  a+ ++  +t+l i++
  CCE29337.1 266 TPLHIALRSGCTQGMQIAVESGADKEAR-DGFSRTPLSIGV 305
                 89**********************9999.999999996665 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.069
       Ank_4   7 yaaisgrlelvrlLl....ekgadinaqdnrsGe 36 
                 ya +  ++++ r+L+    e+ adi+ + + +++
  CCE29337.1 351 YAPYPANHPIMRYLIsfllEHHADIHGT-SHRQN 383
                 5566777777777776666899999887.66555 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   2.3e-05     0.058       4      29 ..     128     154 ..     127     157 .. 0.90
   2 ?   -0.1   0.0      0.59   1.5e+03      12      25 ..     200     211 ..     190     215 .. 0.84
   3 ?   -2.5   0.0       3.5   8.9e+03       5      10 ..     229     234 ..     227     245 .. 0.70
   4 ?    4.9   0.0     0.015        38       4      18 ..     266     277 ..     266     294 .. 0.76
   5 ?   -2.6   0.0       3.6   9.3e+03      17      28 ..     325     337 ..     298     338 .. 0.67
   6 ?    1.3   0.0      0.22   5.6e+02      17      27 ..     364     375 ..     339     379 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
                 BHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlna 29 
                 T+LH A+  g++r +k LL  GA+l++
  CCE29337.1 128 TALHFAVFLGNVRLTKTLLdMGASLTI 154
                 9******************55**9975 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.59
                 HTTHHHHHHHH.TTT CS
         Ank  12 ngkkriiklLL.hGA 25 
                 +g   ++klL  hGA
  CCE29337.1 200 PG---MCKLLMeHGA 211
                 56...9**9999997 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.5
                 HHHHHH CS
         Ank   5 PLHlAa 10 
                  LH Aa
  CCE29337.1 229 ILHFAA 234
                 699988 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.015
                 BHHHHHHHHTTHHHH CS
         Ank   4 TPLHlAatngkkrii 18 
                 TPLH+A + g   ++
  CCE29337.1 266 TPLHIALRSG---CT 277
                 9****98777...43 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 3.6
                 HHHHHH.TTTSTT CS
         Ank  17 iiklLL.hGAnln 28 
                 +i+ +L  GA++n
  CCE29337.1 325 CIRKFLeLGASVN 337
                 5665663488776 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.22
                 HHHHHH.TTTST CS
         Ank  17 iiklLL.hGAnl 27 
                  i++LL h A++
  CCE29337.1 364 LISFLLeHHADI 375
                 799999999997 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0038       9.7      13      44 ..     125     154 ..     116     157 .. 0.81
   2 ?   -2.8   0.0       3.4   8.7e+03      23      40 ..     194     211 ..     189     214 .. 0.67
   3 ?   -1.7   0.0       1.6   4.1e+03      14      24 ..     224     234 ..     221     236 .. 0.78
   4 !   12.0   0.0   7.9e-05       0.2      18      54 ..     266     302 ..     258     303 .. 0.92
   5 ?   -3.4   0.0       5.6   1.4e+04      34      43 ..     367     376 ..     360     379 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0038
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnl 44 
                 d    t+Lh+A+  g+ ++ + Ll++ga+l++
  CCE29337.1 125 DTS--TALHFAVFLGNVRLTKTLLDMGASLTI 154
                 333..*******************99999876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.4
       Ank_5  23 AakygaadvvrlLlarga 40 
                 A  +  + +++lL+++ga
  CCE29337.1 194 AFLQSDPGMCKLLMEHGA 211
                 555566677777778887 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.6
       Ank_5  14 gggntpLhvAa 24 
                 ++ +++Lh+Aa
  CCE29337.1 224 PKVMSILHFAA 234
                 556789****9 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 7.9e-05
       Ank_5  18 tpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 tpLh+A + g+ + +++ ++ gad  ++d+  +t+l 
  CCE29337.1 266 TPLHIALRSGCTQGMQIAVESGADKEARDGFSRTPLS 302
                 9**********************************96 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 5.6
       Ank_5  34 lLlargadln 43 
                 +Ll+++ad+ 
  CCE29337.1 367 FLLEHHADIH 376
                 3448888875 PP

>> DUF4054  Protein of unknown function (DUF4054)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.4e-05     0.036      15      85 ..      51     129 ..      49     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
     DUF4054  15 aiqawldlAallvsakrfgklreqalallaAHll........aadgraaaaggaggaaagrvtsasvGkvsvsydesaa 85 
                   qaw ++A +++ ++++ +    a+ ++aAH +         ++ + +   g+++ a+    s s+G+ ++ yd+s+a
  CCE29337.1  51 SCQAWYEVANEELYKRDSREHNSVAIKWMAAHAVdeqttetaLSTLEISRRWGGQIDAVKPRLSRSEGDDQIVYDTSTA 129
                 579*******************************888887777777777788888999999999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3067.06
//
Query:       CCE29338.1  [L=674]
Description: uncharacterized protein CPUR_03031 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.002   18.8   0.4       0.01   16.6   0.5    2.3  2  TPR_14      Tetratricopeptide repeat
     0.0076   16.1   6.1      0.016   15.1   3.8    2.5  2  F-box-like  F-box-like
  ------ inclusion threshold ------
      0.014   15.2   1.8       0.06   13.2   1.8    2.1  1  F-box       F-box domain


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.5   1.7e-06      0.01       2      43 ..      60     101 ..      59     102 .. 0.95
   2 ?   -3.5   0.0         3   1.8e+04      17      27 ..     512     522 ..     512     525 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.7e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 eal  +a+a++a Gd+d A + ++++l+laP+ ++ +l+l++
  CCE29338.1  60 EALDSRAAAFEAMGDLDSATDDAEWILELAPQLPDGYLRLGK 101
                 78999***********************************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3
      TPR_14  17 pdeAiallrra 27 
                 pd+A++ll +a
  CCE29338.1 512 PDGARNLLSKA 522
                 79999999987 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   3.8   2.6e-06     0.016       3      45 ..     180     224 ..     178     227 .. 0.85
   2 ?   -0.0   0.0      0.14   8.5e+02      25      38 ..     634     647 ..     612     649 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-06
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrl 45 
                  LP E+  +IFs+L   +++ + +V+ +W+    ++  ++LWr +
  CCE29338.1 180 CLPAELVTHIFSHLRCDEISLCLRVSEKWACTLTSPlhARLWRDI 224
                 6*************9999***********9888555556888876 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.14
  F-box-like  25 alVCrrWrrvaldt 38 
                   VC++ r++a+d 
  CCE29338.1 634 DEVCSQVRQAARDQ 647
                 47999999999875 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.8     1e-05      0.06       4      36 ..     179     211 ..     177     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1e-05
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwril 36 
                 ++LP e++ hI+++L   ++  + rVS +w   
  CCE29338.1 179 LCLPAELVTHIFSHLRCDEISLCLRVSEKWACT 211
                 79****************************755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4876.69
//
Query:       CCE29339.1  [L=423]
Description: uncharacterized protein CPUR_03032 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3079.55
//
Query:       CCE29340.1  [L=398]
Description: uncharacterized protein CPUR_03033 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-14   52.8   0.0    1.1e-13   51.5   0.0    1.8  2  rve              Integrase core domain
  ------ inclusion threshold ------
      0.088   12.9   0.2       0.44   10.7   0.1    2.2  2  Pigment_DH       Pigment-dispersing hormone (PDH)
      0.098   12.1   0.0       0.15   11.4   0.0    1.2  1  Glyco_transf_36  Glycosyltransferase family 36


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   7.5e+03      36      57 ..       1      22 [.       1      31 [. 0.76
   2 !   51.5   0.0   1.8e-17   1.1e-13       3     117 ..     187     301 ..     185     303 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
         rve 36 lilaealsdemdastvlaller 57
                +++a+++ d+ +as+++ ++e 
  CCE29340.1  1 MVYAVVVADQPSASDLALVTED 22
                6889999999888887766655 PP

  == domain 2  score: 51.5 bits;  conditional E-value: 1.8e-17
         rve   3 rpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlaller.avarfggvepervlsDngseytskafrefladlgirvsftrp 99 
                  p +++++D+   ++ ++ +g+  +lv+vd fs+ ++ e+++++ +a+ +++ll +  +   +g+ p++++sD+g+ + +  +++f ++ g+++ ++ +
  CCE29340.1 187 TPYYMVSIDFLlSLP-KSTEGNDSILVIVDKFSKQVMLEPCKNNVTAAECARLLYNrLLMANWGL-PKVIISDRGRRFLAALWETFWERVGTKLLHSTA 283
                 5888999****5555.78888***********************999988888865055555555.********************************* PP

         rve 100 grpqdnGkvErfhrtlkd 117
                 ++pq+ G  Er+++t++ 
  CCE29340.1 284 YHPQTDGQTERTIQTIES 301
                 ***************985 PP

>> Pigment_DH  Pigment-dispersing hormone (PDH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   7.4e-05      0.44       5      14 ..     194     203 ..     193     207 .. 0.93
   2 ?   -2.5   0.0       1.3   7.7e+03      10      13 ..     249     252 ..     240     253 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.4e-05
  Pigment_DH   5 INfLLsLPKd 14 
                 I fLLsLPK+
  CCE29340.1 194 IDFLLSLPKS 203
                 89*******9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
  Pigment_DH  10 sLPK 13 
                 +LPK
  CCE29340.1 249 GLPK 252
                 8999 PP

>> Glyco_transf_36  Glycosyltransferase family 36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.5e-05      0.15      60     117 ..     265     320 ..     236     324 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.5e-05
  Glyco_transf_36  60 evwsatwqpvkkeldeykyecrhglgytefesekngietelevfVpkedpveirrlkL 117
                      ++w + w+ v+++l   ++++ h +   + e++ + ie+ ++++V++ ++v++++ +L
       CCE29340.1 265 ALWETFWERVGTKL--LHSTAYHPQTDGQTERTIQTIESAVRMYVSRLEDVRLWQQTL 320
                      68********5555..489***********************************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2762.03
//
Query:       CCE29341.1  [L=659]
Description: uncharacterized protein CPUR_03034 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 5061.07
//
Query:       CCE29342.1  [L=262]
Description: uncharacterized protein CPUR_03035 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.0   0.3       0.29   11.0   0.3    1.5  1  ANTAR     ANTAR domain


Domain annotation for each model (and alignments):
>> ANTAR  ANTAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   1.6e-05      0.29      25      47 ..     210     232 ..     207     234 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.6e-05
                 T--HHHHHHHHHHHHCTTTS-HH CS
       ANTAR  25 glsedeAfrlLrklSmdsnvklr 47 
                 +l+ deA ++Lr++++d++v l 
  CCE29342.1 210 RLVDDEACAQLRQAARDRGVQLM 232
                 7899****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1940.87
//
Query:       CCE29343.1  [L=693]
Description: uncharacterized protein CPUR_03036 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-05   23.1   3.8     0.0012   19.4   0.7    3.7  4  TPR_14      Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.59   10.1   4.0         19    5.3   0.2    3.0  2  F-box       F-box domain
        8.2    6.4   7.3       0.79    9.7   1.1    2.7  3  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.21   1.3e+03       8      33 ..      17      42 ..      11      50 .. 0.84
   2 !   19.4   0.7   2.1e-07    0.0012       2      43 ..      95     136 ..      94     137 .. 0.95
   3 ?   -3.8   0.0         3   1.8e+04      31      39 ..     219     227 ..     217     229 .. 0.80
   4 ?    0.2   0.0      0.31   1.9e+03      17      31 ..     523     537 ..     522     540 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.21
      TPR_14  8 aeallalGdpdeAiallrralalaPd 33
                ++ + a++++  A++ +++a + +P 
  CCE29343.1 17 GRRYVAAEEYGSALTPYHKAAESCPC 42
                67899***************999985 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.1e-07
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 eal  +a++++alG++d+A + ++++l+laP+ ++ +l+l++
  CCE29343.1  95 EALDGRAAIFEALGRLDRATREAEWILELAPQLPDGYLHLGK 136
                 78999***********************************98 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 3
      TPR_14  31 aPddaeawl 39 
                  P++a++w+
  CCE29343.1 219 SPQNARLWR 227
                 699999997 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.31
      TPR_14  17 pdeAiallrralala 31 
                 p++A++ll +al+++
  CCE29343.1 523 PEGARNLLSKALQTN 537
                 799*********975 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2    0.0032        19      18      37 ..      40      62 ..      37      64 .. 0.79
   2 ?    4.6   0.5     0.005        30      23      40 ..     203     220 ..     188     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0032
                S-HHH...HHHHCTT-HHHHHHH CS
       F-box 18 Lplsd...llalrrVSkgwrili 37
                +p s+   + ++r+++k++++++
  CCE29343.1 40 CPCSSaslYPRFRCTCKNFKKAV 62
                5556666789*********9986 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.005
                 HHHHCTT-HHHHHHHTTH CS
       F-box  23 llalrrVSkgwrilidsd 40 
                 l  + rVSk+w++ + s+
  CCE29343.1 203 LNICLRVSKKWKRTLTSP 220
                 66799*******998876 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.79   4.7e+03      21      35 ..      47      62 ..      41      64 .. 0.73
   2 ?    9.7   1.1   0.00013      0.79       3      45 ..     190     229 ..     188     232 .. 0.80
   3 ?   -2.6   0.0      0.91   5.5e+03       1       8 [.     286     293 ..     286     294 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.79
  F-box-like 21 Llr.lalVCrrWrrva 35
                L++  +++C+ ++ ++
  CCE29343.1 47 LYPrFRCTCKNFKKAV 62
                55547899**998876 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00013
  F-box-like   3 rLPdEiLlqIFsyLppsdLlr.lalVCrrWrrvaldt..plLWrrl 45 
                  LP E+  +IF +L      + + +V+++W+r   ++  ++LWr +
  CCE29343.1 190 CLPAELFTHIFWHL------NiCLRVSKKWKRTLTSPqnARLWRDM 229
                 69*********653......549*********99666557899865 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.91
  F-box-like   1 isrLPdEi 8  
                 i++LP+Ei
  CCE29343.1 286 IAYLPEEI 293
                 689****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 5052.08
//
Query:       CCE29344.1  [L=688]
Description: uncharacterized protein CPUR_03037 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0013   18.5   3.5       0.53   10.2   0.2    4.0  4  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   16.3   0.5        4.6    8.3   0.1    3.4  3  TPR_14    Tetratricopeptide repeat
      0.081   13.6   0.1        5.9    7.6   0.0    2.4  2  TPR_16    Tetratricopeptide repeat
       0.26   11.0   0.8         19    5.1   0.1    3.0  3  TPR_11    TPR repeat
       0.31   11.3   1.0        7.7    6.9   0.2    3.5  4  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.2   0.00015      0.53       3      32 ..      12      41 ..      11      41 .. 0.94
   2 ?    4.0   0.0     0.013        47       7      33 ..     100     126 ..      96     127 .. 0.94
   3 ?    2.3   0.0     0.045   1.6e+02       2      20 ..     129     147 ..     128     157 .. 0.84
   4 ?   -2.9   0.0         2     7e+03       5      15 ..     443     453 ..     442     454 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  3 alynlGnayfklgkydeAleyyekALelnP 32
                al  +++ +++  + d Al++y+ A++++P
  CCE29344.1 12 ALIEKALSCLEASEIDLALDAYRLAVKICP 41
                788899**********************98 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.013
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 ++ ++  l ++d A ++ e  Lel P+
  CCE29344.1 100 RATIFELLDELDNATDDAEWILELAPQ 126
                 8999*********************96 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.045
                 HHHHHHHHHHHHTT-HHHH CS
       TPR_1   2 kalynlGnayfklgkydeA 20 
                 + +  lGn+   +g+ d A
  CCE29344.1 129 DGYLHLGNIEELQGNSDFA 147
                 7899**********98876 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 2
                 HHHHHHHHHTT CS
       TPR_1   5 ynlGnayfklg 15 
                  n+Gn +++ g
  CCE29344.1 443 INRGNSLQHIG 453
                 69***998766 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.03   1.1e+02       3      32 ..      12      41 ..      10      53 .. 0.81
   2 ?    8.3   0.1    0.0013       4.6       2      42 ..      95     135 ..      94     137 .. 0.94
   3 ?   -1.3   0.0       1.6   5.9e+03      17      30 ..     499     512 ..     498     514 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.03
      TPR_14  3 allalaeallalGdpdeAiallrralalaP 32
                al + a  +l++ + d A++++r a++ +P
  CCE29344.1 12 ALIEKALSCLEASEIDLALDAYRLAVKICP 41
                5666677889999***************99 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0013
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 eal  +a +++ l+++d A + ++++l+laP+ ++ +l+l+
  CCE29344.1  95 EALDHRATIFELLDELDNATDDAEWILELAPQLPDGYLHLG 135
                 78999********************************9998 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.6
      TPR_14  17 pdeAiallrralal 30 
                 p++A++ll +a+++
  CCE29344.1 499 PEGARNLLSKAIQT 512
                 799********985 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0017       5.9      34      65 ..      10      41 ..       4      42 .. 0.90
   2 ?    3.3   0.0     0.037   1.3e+02      18      49 ..     115     143 ..     108     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0017
      TPR_16 34 aeAllllgdaalrqgrlaeAaalyraalraap 65
                 +Al ++++++l++++ ++A+++yr a++  p
  CCE29344.1 10 MAALIEKALSCLEASEIDLALDAYRLAVKICP 41
                689999*********************98876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.037
      TPR_16  18 aaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                   +e+ l+++   P+ ++ +l+lg++   qg+
  CCE29344.1 115 DDAEWILELA---PQLPDGYLHLGNIEELQGN 143
                 568899****...*************999997 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.022        78       8      25 ..      24      41 ..      18      42 .. 0.88
   2 ?    5.1   0.1    0.0052        19      21      41 ..     121     141 ..     121     142 .. 0.85
   3 ?   -2.9   0.0       1.6   5.9e+03      11      22 ..     500     511 ..     500     513 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.022
      TPR_11  8 GkyeeAieaYkkAlkldP 25
                 +++ A+ aY+ A+k++P
  CCE29344.1 24 SEIDLALDAYRLAVKICP 41
                57899***********99 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0052
      TPR_11  21 lkldPdnaeayynLGlayykq 41 
                 l+l P+ ++ y++LG++   q
  CCE29344.1 121 LELAPQLPDGYLHLGNIEELQ 141
                 6899***********986665 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.6
      TPR_11  11 eeAieaYkkAlk 22 
                 e+A + ++kA++
  CCE29344.1 500 EGARNLLSKAIQ 511
                 789999999997 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2    0.0022       7.7       3      32 ..      12      41 ..      11      41 .. 0.94
   2 ?   -0.3   0.0      0.45   1.6e+03       2      33 ..      95     126 ..      94     127 .. 0.87
   3 ?   -1.0   0.0      0.72   2.6e+03       2      16 ..     129     143 ..     128     147 .. 0.74
   4 ?   -3.2   0.0       3.7   1.3e+04      18      29 ..     500     511 ..     499     511 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0022
       TPR_2  3 alynlGlayyklgdyeeAleafekAleldP 32
                al + +l+++++ + + Al+a++ A++++P
  CCE29344.1 12 ALIEKALSCLEASEIDLALDAYRLAVKICP 41
                788999**********************98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.45
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 eal  ++ + + l++++ A ++ e  lel+P+
  CCE29344.1  95 EALDHRATIFELLDELDNATDDAEWILELAPQ 126
                 789999999**********9999888888886 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.72
       TPR_2   2 ealynlGlayyklgd 16 
                 +++  lG++ + +g+
  CCE29344.1 129 DGYLHLGNIEELQGN 143
                 567788888888887 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 3.7
       TPR_2  18 eeAleafekAle 29 
                 e A++++ kA++
  CCE29344.1 500 EGARNLLSKAIQ 511
                 789999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 5059.67
//
Query:       CCE29345.1  [L=473]
Description: uncharacterized protein CPUR_03038 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0017   18.1   0.2        1.7    8.6   0.0    3.5  3  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.012   16.3   1.1      0.012   16.3   1.1    3.4  4  TPR_14    Tetratricopeptide repeat
       0.03   14.6   1.5        1.3    9.4   0.7    2.7  3  TPR_12    Tetratricopeptide repeat
      0.033   14.8   2.2          3    8.6   0.6    2.7  2  TPR_16    Tetratricopeptide repeat
       0.28   11.4   3.0         36    4.8   0.2    4.0  5  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.081   2.9e+02       8      27 ..      17      36 ..      12      40 .. 0.79
   2 !    8.6   0.0   0.00047       1.7       7      33 ..      56      82 ..      55      83 .. 0.94
   3 ?    3.5   0.0      0.02        72       2      20 ..      85     103 ..      84     112 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.081
                HHHHHHTT-HHHHHHHHHHH CS
       TPR_1  8 GnayfklgkydeAleyyekA 27
                G  + + +ky+ Al  + +A
  CCE29345.1 17 GRHLVEAKKYNRALNLFFRA 36
                55566789******999998 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00047
                HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  7 lGnayfklgkydeAleyyekALelnPn 33
                +++a+  +g++d A ++ e  L+l P+
  CCE29345.1 56 RAAAFEAMGELDSAADDAEWILQLAPQ 82
                899**********************96 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHTT-HHHH CS
       TPR_1   2 kalynlGnayfklgkydeA 20 
                 + + +lGn+   +g+ d A
  CCE29345.1  85 DGYLRLGNTEKLQGNSDFA 103
                 789***********98876 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.6   5.9e+03       5      27 ..      14      36 ..      10      41 .. 0.79
   2 ?   16.3   1.1   3.4e-06     0.012       2      42 ..      51      91 ..      50      93 .. 0.95
   3 ?    1.3   0.0      0.22     8e+02      17      30 ..     297     310 ..     296     315 .. 0.90
   4 ?   -3.4   0.1         5   1.8e+04      19      29 ..     429     439 ..     427     442 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.6
      TPR_14  5 lalaeallalGdpdeAiallrra 27
                 ++++ l ++ ++ +A++l+ ra
  CCE29345.1 14 IERGRHLVEAKKYNRALNLFFRA 36
                57899999999999999998666 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 3.4e-06
      TPR_14  2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42
                eal  +a+a++a G++d A++ ++++l+laP+ ++ +l+l+
  CCE29345.1 51 EALDSRAAAFEAMGELDSAADDAEWILQLAPQLPDGYLRLG 91
                78999********************************9997 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.22
      TPR_14  17 pdeAiallrralal 30 
                 pd+A++ll +al++
  CCE29345.1 297 PDRARNLLSKALQT 310
                 89*********985 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 5
      TPR_14  19 eAiallrrala 29 
                 eA a lr+a +
  CCE29345.1 429 EACAQLRQAAR 439
                 56677777654 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.7   0.00035       1.3       8      76 ..      15      81 ..       9      82 .. 0.89
   2 ?    2.9   0.0     0.037   1.3e+02      48      76 ..      87     115 ..      86     116 .. 0.87
   3 ?   -2.8   0.0       2.2   7.9e+03      62      73 ..     298     309 ..     297     312 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00035
      TPR_12  8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76
                +++  l ++++y  Al l+ +a    +    +d+   +++l   + +++a+g+++ A +  e  l++a+
  CCE29345.1 15 ERGRHLVEAKKYNRALNLFFRASSFNNGK--CDNVHHIEALDSRAAAFEAMGELDSAADDAEWILQLAP 81
                678888899999999*******9999888..99999************************999999986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.037
      TPR_12  48 lrnLgrlyralgryeeAlelleealaiae 76 
                 +  Lg +  ++g+ + A+e+++  +++ +
  CCE29345.1  87 YLRLGNTEKLQGNSDFAWEIYTMGIEAVK 115
                 67899****************99888765 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.2
      TPR_12  62 eeAlelleeala 73 
                 + A++ll +al+
  CCE29345.1 298 DRARNLLSKALQ 309
                 445555555554 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011        39       2      20 ..      15      33 ..      14      38 .. 0.88
   2 ?    8.6   0.6   0.00084         3       4      49 ..      57      99 ..      55     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.011
      TPR_16  2 alaraalragdyddAaaal 20
                +++r +++a++y +A++++
  CCE29345.1 15 ERGRHLVEAKKYNRALNLF 33
                579**************99 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00084
      TPR_16  4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49
                a a+ + g+ d Aa  +e+ l ++   P+ ++ +l lg+    qg+
  CCE29345.1 57 AAAFEAMGELDSAADDAEWILQLA---PQLPDGYLRLGNTEKLQGN 99
                7789999*****************...***********98877775 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.029     1e+02       4      24 ..      13      33 ..      11      38 .. 0.89
   2 ?    4.8   0.2      0.01        36       2      33 ..      51      82 ..      50      83 .. 0.89
   3 ?   -1.0   0.0      0.73   2.6e+03       2      16 ..      85      99 ..      84     103 .. 0.72
   4 ?   -0.8   0.0      0.64   2.3e+03      18      29 ..     298     309 ..     297     310 .. 0.89
   5 ?   -3.1   0.0       3.3   1.2e+04       2      19 ..     322     339 ..     321     342 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.029
       TPR_2  4 lynlGlayyklgdyeeAleaf 24
                l ++G+ + ++++y++Al++f
  CCE29345.1 13 LIERGRHLVEAKKYNRALNLF 33
                678999999********9987 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.01
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleldPn 33
                eal  ++ a +++g+++ A+++ e  l+l+P+
  CCE29345.1 51 EALDSRAAAFEAMGELDSAADDAEWILQLAPQ 82
                78999****************99988888886 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.73
       TPR_2  2 ealynlGlayyklgd 16
                +++ +lG+    +g+
  CCE29345.1 85 DGYLRLGNTEKLQGN 99
                567888888877777 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.64
       TPR_2  18 eeAleafekAle 29 
                 ++A++++ kAl+
  CCE29345.1 298 DRARNLLSKALQ 309
                 89********97 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 3.3
       TPR_2   2 ealynlGlayyklgdyee 19 
                 +++ ++ ++y   ++y e
  CCE29345.1 322 KYYKRRSRLYSSVDKYVE 339
                 788899999988777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3458.96
//
Query:       CCE29346.1  [L=482]
Description: related to TRI13-cytochrome P450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-45  153.5   0.0    1.9e-30  106.0   0.0    2.2  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.0   1.1e-34   1.9e-30      81     368 ..      21     348 ..       3     352 .. 0.85
   2 !   45.3   0.0   2.9e-16   5.2e-12     382     439 ..     385     455 ..     378     478 .. 0.87

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 1.1e-34
                 TTTTSSSTTCGH.HHHHHHHHHHHHHHTSH.STTTHHHHHHHHHHHHHHHHHCCCCHCS..EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH...... CS
        p450  81 pfkgkgvlfang.ekwkklRrfltptltsf.gklsleelveeeaedlveklrkkagess..elditellskaaldvigsilFgarfdlledek...... 169
                 ++ + +v+++++ ++ k +R ++   +  +  + ++ +++ e a+ l++ +++k ++++   +   ++l ++  +   +++Fg   +    +       
  CCE29346.1  21 FTPEHHVAMMSSdPRFKANRELVKGLMSPGmLSDEFAPVIYEKASHLIDLWKTKMDAAQgrPFAALDDLREVSWELTLTLVFGFDGE---RKVlqphrd 116
                 55667777777758888888877776666665559************************99**********************9754...22245778* PP

                 ........................HHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHH CS
        p450 170 ........................lselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsakksrrdflda 244
                                         l + v+a + ++++l++ s ++  + ++     tk ++ ++   k l++ ++k  +  ++  +s+ ++ ++ +d+
  CCE29346.1 117 hllskgssvawtdsadtacfarppLASEVQALAVMVKFLHFASIRVARHLQIWILKRTKWRKYFQTKEKLLSKEINKSAKRLHSAGSSDISRCKTVIDH 215
                 *********************99977889999999999999999999999966667777777777777778888888888888888888999******* PP

                 HHHHC.....TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH....HHCCTTTT-HHHHCCT-..HHHHHHHHHHH CS
        p450 245 lllak.....kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEid....evlgdkreptyddlqkl..pyldavikEtL 332
                 l++ +     k+++    +++  ++ +++ +++aG+dT s+ + w+  +La+n++vq+klr  ++    e+ g++r+p+ +++ +l  pylda+i E+L
  CCE29346.1 216 LIEREivmaeKTNSS-PDFNRPSIRDEAFGFFVAGSDTVSTSMGWTVKFLADNQTVQAKLRRQLEisycEAYGENRQPDVSEILRLstPYLDAFIDESL 313
                 ******986555555.59******************************************99665445577799999998888776669********** PP

                 HHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHH CS
        p450 333 RlhpvvplllpRevtkdvvirgylipkGtevivnly 368
                 R   ++p +l R++t d++i g++ipkGt+v+++++
  CCE29346.1 314 RCGKTSP-NLLRQATVDTEILGHHIPKGTTVFLMVG 348
                 *******.999*********************9876 PP

  == domain 2  score: 45.3 bits;  conditional E-value: 2.9e-16
                 S--GGGGB-TTS.............CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEEST CS
        p450 382 eFdpeRFldekg.............nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqp 439
                  F+peR+l+++g             + + +   +l FGaG R C G+rlA++e+++++++l+ nF++e + 
  CCE29346.1 385 DFRPERWLKTNGektgtdagefdnlEYDCNAGPMLSFGAGSRGCFGKRLAYLEMRIMITLLVWNFTFEKCA 455
                 6*********************9996668999************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3540.29
//
Query:       CCE29347.1  [L=588]
Description: related to TRI13-cytochrome P450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-44  150.0   0.0    4.9e-32  111.3   0.0    2.4  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   0.0   2.7e-36   4.9e-32      42     365 ..      92     452 ..      78     462 .. 0.79
   2 !   35.9   0.0     2e-13   3.6e-09     382     438 ..     491     560 ..     484     577 .. 0.93

  Alignments for each domain:
  == domain 1  score: 111.3 bits;  conditional E-value: 2.7e-36
                 TTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHHHHHHHHHHTSH.STTTHHHHHHHHHHHHHHHHHCCCCHCS. CS
        p450  42 gskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkklRrfltptltsf.gklsleelveeeaedlveklrkkagess. 137
                  skp+v+ls++     +++++++ef +   + +++ +  +    +v+++++ ++ k ++ ++   +  +  +  + ++v e ++ l+  +++k ++++ 
  CCE29347.1  92 FSKPFVILSDYYESYDIMVRRTKEFDRA--PLHIDEFLPFMPDHQVAMMSSdPRFKAHKELVKGLMSPGnLSSDFAPVVHEKVNHLIGLWKTKMDAAQg 188
                 579*******************999995..77888888777788888888846666666665555555554449***********************99 PP

                 .EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH..............................HHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHH CS
        p450 138 .elditellskaaldvigsilFgarfdlledek..............................lselvkaveelssllskssvqllllfpllkylptkl 205
                   ++  ++l++  ++  ++++Fg      + +                               l+  ++a + + ++++++ +++  + ++     tk 
  CCE29347.1 189 rPFSAPQDLQELSCELTSTLVFGFDE---GRKVlepyrdyisskgssatwtdaantvcfvrpsLPPELQALAIMTKFMQFTTTCFAPHLQVWILKRTKW 284
                 9**********************963...3333456778888888888888888888888888444455555555666555555555555333334444 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHC...TTCTCT.SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH CS
        p450 206 lrklkeavkklkdlldklieerretldsakksrrdfldalllak...kekkge.sklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklr 300
                 ++ ++   + l+d ++k +e      +++ ++ ++ +d+ll+ +    +k+g   ++++  ++ +++  ++aG+dT s+ ++wa  +La+n+++q+klr
  CCE29347.1 285 RKYFQTKDRLLSDEINKSVERLFTAGSDS-SRCKTVIDHLLERElvmAKKSGSrPNFHKPSIRDEAFGYFVAGSDTVSTSMCWAVKFLADNQTAQAKLR 382
                 44444444556666666665555554444.89*************97444444689******************************************* PP

                 HHHHHHCCTTT......T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEE CS
        p450 301 eEidevlgdkr......eptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGteviv 365
                   +++  +d+        +++ + ++ pylda+i+E+LR   +vp +l R++t d++i gy+ipkGt++++
  CCE29347.1 383 RQLHSSYRDAYdeerqpDVSEICHTSAPYLDAFIEESLRCGKTVP-SLIRQATVDTEILGYHIPKGTQIFL 452
                 ***999977656677555566666788******************.888********************97 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 2e-13
                 S--GGGGB-TTS.............CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEES CS
        p450 382 eFdpeRFldekg.............nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelq 438
                  F+peR+l+++g             + + +   +l FGaG R C G+rlA++e ++++++l+ nF++e +
  CCE29347.1 491 HFKPERWLKTRGdktrtgagefdniEYDCNAGPMLSFGAGLRGCFGKRLAYLEKRIMITLLVWNFTFEKC 560
                 6*********************9996668999***********************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4044.92
//
Query:       CCE29348.1  [L=588]
Description: related to cytochrome P450 monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-44  150.2   0.0    3.4e-30  105.2   0.0    2.4  2  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   1.9e-34   3.4e-30      41     367 ..      91     454 ..      75     457 .. 0.81
   2 !   42.1   0.0   2.6e-15   4.6e-11     382     438 ..     491     560 ..     487     574 .. 0.93

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 1.9e-34
                 ETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHHHHHHHHHHTSHSTT..THHHHHHHHHHHHHHHHHCCCCHC CS
        p450  41 lgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkklRrfltptltsfgkl..sleelveeeaedlveklrkkages 136
                 + skp+v+ls++     ++++++eef +   +++++ +  +     v+++++ ++ k ++ ++ + l+s+g+l   +++++ e a+ l+  +++k +++
  CCE29348.1  91 PFSKPFVILSDYYECYDIMVRRTEEFDR--ASFHIDEFLPFMPDHRVAMMSSdPRLKANKELV-KGLMSPGILssDVVPVIYEKARHLMGLWKTKMDAA 186
                 3459*******************99999..69****999777778888888856666666655.555556354449*********************** PP

                 S..EEETHHHHHHHHHHHHHHHHHSSH..HHTTTSSH...........................HHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCH CS
        p450 137 s..elditellskaaldvigsilFgar..fdlledek...........................lselvkaveelssllskssvqllllfpllkylptk 204
                 +   +   e+l +   +   + +Fg     ++le ++                           ++ +  av + ++ + +ss+ + l  ++l    tk
  CCE29348.1 187 QgrPFAALEDLRELSWELTWTFTFGFDegRGILERHQeyllskgssaswtdaantvcfarpplpSEVYALAVMTKFMQFTTSSFAPHLQVWIL--KRTK 283
                 999************99999999886411566666669*********************9996533333333333334445555555555544..5899 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHC.....TTCTCT.SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHH CS
        p450 205 llrklkeavkklkdlldklieerretldsakksrrdfldalllak.....kekkge.sklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqe 297
                  ++ ++   k+l+d +++ +e   +  +++ ++r++ ld+ll+ +     k +     +++++ ++ +++  ++ G+dT s+++ wa  +La+n+++q+
  CCE29348.1 284 WRKSFQTKEKFLSDEINESVERLLAAGSDS-SRRKTVLDHLLERElvmaeKSR--SrPNFHKKSIRDEAFGSFVTGSDTVSTAMGWAVKFLADNQTAQA 379
                 999999999999999999999999999999.79*************9853333..2469**************************************** PP

                 HHHHHHHHHCCTTT....T-HHHHC..CT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEH CS
        p450 298 klreEidevlgdkr....eptyddl..qklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnl 367
                 klr  +++  +d+     ep+ +++  ++ pylda+i+E+LR   +vp +l R++t d++i gy+ipkGt+v++ +
  CCE29348.1 380 KLRRQLHSSYRDAHgnkrEPDVSEIvyTSAPYLDAFIEESLRCGKTVP-SLVRQATVDTEILGYHIPKGTTVFMGI 454
                 ******998755545555555555433678******************.999********************9865 PP

  == domain 2  score: 42.1 bits;  conditional E-value: 2.6e-15
                 S--GGGGB-TTS.............CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEES CS
        p450 382 eFdpeRFldekg.............nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelq 438
                 +F peR+l+++g             + + +   +l FGaG R C G+rlA++e+++++a+l+ nF++e +
  CCE29348.1 491 QFAPERWLKTSGdktrtdagefdnvEYDCNAGPMLSFGAGSRGCFGKRLAHLEMRIMIALLVWNFTFEKC 560
                 8*********************9996668999***********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4397.84
//
Query:       CCE29349.1  [L=364]
Description: probable translation initiation factor eIF3 p39 subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-18   67.0   4.3    1.9e-06   28.5   0.1    5.9  6  WD40           WD domain, G-beta repeat
    5.5e-12   45.8   0.0       0.09   13.1   0.0    4.4  4  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
      0.003   16.3   0.0     0.0042   15.8   0.0    1.2  1  Nup160         Nucleoporin Nup120/160
     0.0069   15.8   0.0       0.11   11.8   0.0    2.3  2  WD40_like      WD40-like domain
     0.0095   15.8   0.1        4.3    7.2   0.0    3.2  4  eIF2A          Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.057   13.0   0.0        1.4    8.5   0.0    2.5  2  PQQ_2          PQQ-like domain
       0.15   11.1   0.0       0.64    9.0   0.0    1.7  2  Coatomer_WDAD  Coatomer WD associated region


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.54   1.4e+03      20      37 ..      47      64 ..       5      64 .. 0.76
   2 !   28.5   0.1   7.6e-10   1.9e-06       2      37 ..      70     106 ..      69     107 .. 0.94
   3 ?   -1.1   0.0       1.7   4.3e+03       2      26 ..     112     136 ..     111     141 .. 0.75
   4 !    7.4   0.0    0.0035         9      17      38 .]     180     202 ..     162     202 .. 0.83
   5 !   12.5   0.0   8.1e-05      0.21      10      36 ..     215     244 ..     208     245 .. 0.85
   6 !   13.7   0.0   3.5e-05     0.091       4      36 ..     308     341 ..     305     343 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.54
                TTSSEEEEEETTSEEEEE CS
        WD40 20 pdgawlasGsdDgtvriW 37
                 dg+ ++s s+D+ +  W
  CCE29349.1 47 LDGDIIFSVSKDQQICAW 64
                478889988999998776 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 7.6e-10
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 + l+t+ GH + ++ ++++p  +++asGs D+t r+W
  CCE29349.1  70 ERLGTYHGHvGAIWTVDVDPTTTMIASGSADNTMRLW 106
                 6789*****999************************* PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.7
                 EEEEEEESSSSEEEEEEETTSSEEE CS
        WD40   2 qclrtltGHssvtslafspdgawla 26 
                 +cl+t++  + v  + f+ dg+ l+
  CCE29349.1 112 RCLKTWEFPTAVKRVEFNEDGTKLL 136
                 6788876555588899999998775 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0035
                 E.EETTSSEEEEEETTSEEEEEE CS
        WD40  17 a.fspdgawlasGsdDgtvriWd 38 
                 a +s   +++++G++Dg+v  +d
  CCE29349.1 180 AgWSNMDKYIIAGHEDGSVSQYD 202
                 368999999**********9887 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 8.1e-05
                 S...SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40  10 H...ssvtslafspdgawlasGsdDgtvri 36 
                 H   +++t+l++s+d ++++++++D++ ++
  CCE29349.1 215 HeldNPITDLQWSSDRTYFITACKDKNAKL 244
                 544457*******************99876 PP

  == domain 6  score: 13.7 bits;  conditional E-value: 3.5e-05
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 ++  +GH ++ + +a +p g+  asG++Dg vr+
  CCE29349.1 308 VGRVRGHfGPLNTVAADPTGKSYASGGEDGYVRV 341
                 56679**888************9**********8 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.6e-05      0.17       6      89 ..      48     128 ..      44     131 .. 0.80
   2 !   11.6   0.0    0.0001      0.26      38      80 ..     174     216 ..     161     218 .. 0.84
   3 !   13.1   0.0   3.5e-05      0.09      36      81 ..     216     261 ..     212     268 .. 0.90
   4 ?    4.6   0.0     0.016        40      38      81 ..     315     358 ..     266     364 .] 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.6e-05
  ANAPC4_WD40   6 tmDLiAlatedgellv.fRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                    D+i  +++d+++ + f  ng+r+ t   +++ + +  +   p  +++a + +d+++rl ++++g+++++++  +   v+ +++
   CCE29349.1  48 DGDIIFSVSKDQQICAwFSHNGERLGTY--HGHVGAIWTVDVDPTTTMIASGSADNTMRLWEVKTGRCLKTWEFPTA--VKRVEF 128
                  5677777888888765266688888888..7888999999999***************************9987766..666665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0001
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  +s+ +   W++ +k +  +++dg+v+ +d ++g+++ ++++++
   CCE29349.1 174 ESKATVAGWSNMDKYIIAGHEDGSVSQYDGKTGDLMDNIPIHE 216
                  55666678****************************9999875 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 3.5e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  + d+ +++L+W+ d + +  a++d + +l+ a +  v++++++++ 
   CCE29349.1 216 ELDNPITDLQWSSDRTYFITACKDKNAKLIAARDLSVLKTYPADTP 261
                  56899*********************************99998765 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.016
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                   +  + +a  p gk  a + +dg vr+++  +g     ++v++e
   CCE29349.1 315 FGPLNTVAADPTGKSYASGGEDGYVRVHHFDKGYYDFMYEVERE 358
                  556667778899******************99988777777766 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.6e-06    0.0042     229     259 ..      90     120 ..      67     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-06
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatidll 259
                 + t++++ s d+++r+W ++tg+cl t + +
  CCE29349.1  90 TTTMIASGSADNTMRLWEVKTGRCLKTWEFP 120
                 789************************8877 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   4.2e-05      0.11       3      97 ..      82     179 ..      80     189 .. 0.83
   2 ?    0.9   0.0     0.087   2.2e+02     180     231 ..     243     296 ..     228     305 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.2e-05
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlD..Gtillsllenee.evenekieedistvkviddklli 97 
                 i+++d+++  ++i+ G+ d+++++ +++++       +f   v  v++ +d  ++l vt    G++++ ++   +  v+ e+ +e i t+  ++ k  +
  CCE29349.1  82 IWTVDVDPTTTMIASGSADNTMRLWEVKTGRCLKTW-EFPTAVKRVEFNEDGtKLLGVTEKrmGYLSNIVVVDINpDVDAEQSDEKILTIVCDESKATV 179
                 89****************************998876.59999*****9988757777775445999887766655699999999999988877776555 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.087
   WD40_like 180 eililkknvilqkidvegkPe...cillvddylivGgsfkyllliNiklnvntfk 231
                 +++  ++  +l+ +  ++ P     i   +dy+i+Gg    + +  + +   +f+
  CCE29349.1 243 KLIAARDLSVLKTYPADT-PLnsaVITPKKDYVILGGGQAAMDVTRTSARQGKFE 296
                 444455667888888777.431113445689999999988877766666665555 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.071   1.8e+02      88     152 ..      45     107 ..      39     127 .. 0.67
   2 ?    3.4   0.1     0.024        61     105     162 ..      84     139 ..      58     155 .. 0.82
   3 ?   -0.6   0.0      0.39     1e+03     141     159 ..     172     190 ..     153     202 .. 0.75
   4 !    7.2   0.0    0.0017       4.3      59     119 ..     218     278 ..     205     286 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.071
                 EECSCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE- CS
       eIF2A  88 fdlkvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlvews 152
                 ++l++++i++++++++ +  fs +g+   l+ +    G++  +dv+ ++++    +a+ t+  w+
  CCE29349.1  45 YNLDGDIIFSVSKDQQICAWFSHNGER--LGTYHGHVGAIWTVDVDPTTTMIASGSADNTMRLWE 107
                 777788888888888888888888875..566777778888888885555444444444444454 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.024
                 EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--E.EEE-TTSSEEEEEE CS
       eIF2A 105 tiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatl.vewspdgryvlTat 162
                 t+  +p+ ++++ +   n+   + +w+vk+ +++++ e ++a++ ve++ dg+ +l  t
  CCE29349.1  84 TVDVDPTTTMIASGSADNT---MRLWEVKTGRCLKTWEFPTAVKrVEFNEDGTKLLGVT 139
                 5666777788888777777...9999999999999999999985499999999887665 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.39
                 EE-TT--EEEE-TTSSEEE CS
       eIF2A 141 aeaanatlvewspdgryvl 159
                  ++++at+  ws+ ++y++
  CCE29349.1 172 CDESKATVAGWSNMDKYII 190
                 4678888889999988886 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0017
                 SS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.CEEEEEEE.EES--EEEE-TTSSEEEEE- CS
       eIF2A  59 egpihdvaWspkskefaviyGkmpakvslfdlk.vkviskle.eqkrNtiffspkgklvllaG 119
                 ++pi d++Ws++++ f+      +++++l   + ++v++++    + N+ +  pk  +v+l+G
  CCE29349.1 218 DNPITDLQWSSDRTYFITAC--KDKNAKLIAARdLSVLKTYPaDTPLNSAVITPKKDYVILGG 278
                 5689*****99998886543..34444444443356666655146899999999999999998 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.076   1.9e+02     203     233 ..      40      71 ..      35      75 .. 0.77
   2 ?    8.5   0.0   0.00054       1.4     109     151 ..     167     216 ..      47     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.076
       PQQ_2 203 singlpildgdllyvvsa.gelialdratGav 233
                 s+n    ldgd+++ vs+ +++ a+   +G++
  CCE29349.1  40 SRNDRYNLDGDIIFSVSKdQQICAWFSHNGER 71 
                 56666778999999999669999988888876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00054
       PQQ_2 109 pae.lrssaspava.....gdtvvvgessgklvaldpkdGkvlWerel.a 151
                  ++ ++  ++ +va     ++++++g+++g +  +d k+G+++++ ++  
  CCE29349.1 167 ILTiVCDESKATVAgwsnmDKYIIAGHEDGSVSQYDGKTGDLMDNIPIhE 216
                 4445666666666678888899999999************9999999854 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.23   5.8e+02     127     198 ..     102     175 ..      93     185 .. 0.63
   2 ?    9.0   0.0   0.00025      0.64     120     166 ..     190     240 ..     187     265 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.23
                    .XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX......XXXXXXXXXXXX.............XXXXXXX.XX CS
  Coatomer_WDAD 127 svsfYDweqgklvrridvkk.vknVvwsddgelvalvs......kdtvyilsynleaveeedeeegvedafevlhelse 198
                    ++ ++++++g+ ++  +    vk+V  ++dg+ +  v+       +++++++ n +     d e+  e+ ++++ + + 
     CCE29349.1 102 TMRLWEVKTGRCLKTWEFPTaVKRVEFNEDGTKLLGVTekrmgyLSNIVVVDINPD----VDAEQSDEKILTIVCD-ES 175
                    46778888888888888775599999999998888776222222233333333333....6666666666666666.44 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00025
                    XXXXXXX.XXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 120 LgvksegsvsfYDweqgklvrridvk....kvknVvwsddgelvalvskdt 166
                    +  +++gsvs YD ++g l  +i ++    ++++  ws d+++++ ++kd+
     CCE29349.1 190 IAGHEDGSVSQYDGKTGDLMDNIPIHeldnPITDLQWSSDRTYFITACKDK 240
                    56678999****************9988766**************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2729.81
//
Query:       CCE29350.1  [L=1111]
Description: probable ATPase component of chromatin remodeling complex (ISW1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-76  255.9   0.1    8.4e-76  254.9   0.1    1.4  1  SNF2_N           SNF2 family N-terminal domain
    7.6e-43  145.2   2.5    2.7e-42  143.4   2.5    2.1  1  SLIDE            SLIDE
    1.3e-35  122.5   2.6    1.3e-35  122.5   2.6    3.5  3  HAND             HAND
    9.1e-19   67.9   0.1    6.4e-18   65.1   0.0    2.5  2  Helicase_C       Helicase conserved C-terminal domain
    3.6e-12   46.6   0.0    1.9e-11   44.3   0.0    2.4  1  ResIII           Type III restriction enzyme, res subunit
    9.5e-05   21.7   0.0    0.00046   19.5   0.0    2.2  2  HDA2-3           Class II histone deacetylase complex subunit
    0.00013   22.1   0.1        0.2   11.9   0.0    3.0  2  Myb_DNA-binding  Myb-like DNA-binding domain
    0.00023   20.9   0.0    0.00068   19.4   0.0    1.8  1  SWI2_SNF2        SWI2/SNF2 ATPase
    0.00031   20.6   0.0    0.00096   19.0   0.0    1.9  2  DEAD             DEAD/DEAH box helicase
    0.00046   20.1   0.1     0.0013   18.5   0.1    1.8  1  DUF1086          Domain of Unknown Function (DUF1086)
  ------ inclusion threshold ------
      0.053   13.2   0.0       0.11   12.1   0.0    1.5  1  DEAD_2           DEAD_2
       0.06   13.4   0.0       0.17   11.9   0.0    1.8  1  AAA_14           AAA domain
      0.081   13.7   3.1       0.31   11.8   3.1    2.0  1  Occludin_ELL     Occludin homology domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.9   0.1   6.1e-79   8.4e-76      49     349 ..     191     462 ..     175     463 .. 0.87

  Alignments for each domain:
  == domain 1  score: 254.9 bits;  conditional E-value: 6.1e-79
                 HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  49 aeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkll 147
                 ++++++   GiLaDemGLGKT+q+++++    + +++   +       gp+L+vvP+s+ld+W++e++r++++ ++ vl + ++++++     + + + 
  CCE29350.1 191 ISLHENGISGILADEMGLGKTLQTISFLG---YLRHIAGIT-------GPHLVVVPKSTLDNWKREFARWTPEVNVLVLQGAKEERTTLI---NERLVD 276
                 56788999*********************...888888865.......************************997755555554433333...444456 PP

                 ----EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 148 adydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllq 246
                 +++dv+it+Y+++ re+      s+lk+  w+++++DE+h++kn++s+++++++ ++++nr+++tGTP+qn+l++l++Ll+fL +++fg+ + fd++++
  CCE29350.1 277 EKFDVCITSYEMILREK------SHLKKFAWEYIIIDEAHRIKNEESSLSQIIRLFQSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSEAFDQWFS 369
                 789***********999......9*************************************************************************** PP

                 HHHHHHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 247 rpieaqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrqacn 345
                    +  ++  +++L+ +l++++lrr+k+dvek+l pk+e  ++l +s+++ k+Y+++le+ +  +              +++sk+++l+++++lr++cn
  CCE29350.1 370 GQGR-DQDTVVQQLHRVLRPFLLRRVKSDVEKSLLPKKEINVYLGMSEMQVKWYQKILEKDIDAVNGAGG---------KRESKTRLLNIVMQLRKCCN 458
                 *999.88999*********************************************444433332222222.........22234779************ PP

                 ---X CS
                 xxxx RF
      SNF2_N 346 hpql 349
                 hp+l
  CCE29350.1 459 HPYL 462
                 **98 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   2.5     2e-45   2.7e-42       1     114 []     909    1025 ..     909    1025 .. 0.98

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 2e-45
       SLIDE    1 ekiikqIekgekkieklkelkellkkkveqyknplqelkikyppsnkgkkeyteeeDrfllvllakyGygn...yekikkeiresplFrfDwflksr 94  
                  +k ik Ie ge++++k +++++ll+kk++qy+ plq+lki+y++s+++kk yteeeDrfllvll+kyG+++   yek++++iresplFrfDwf+ sr
  CCE29350.1  909 NKSIKVIEDGEERMRKIENQRKLLRKKMSQYRVPLQQLKINYSVSTTNKKVYTEEEDRFLLVLLDKYGIDSeglYEKMRDDIRESPLFRFDWFFLSR 1005
                  6899********************************************************************************************* PP

       SLIDE   95 tpqelqkRcetLlklvekel 114 
                  tp+el++Rc+tL++++ ke+
  CCE29350.1 1006 TPTELSRRCTTLITTIVKEF 1025
                  ******************96 PP

>> HAND  HAND
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       9.8   1.4e+04      77      99 ..     691     713 ..     673     716 .. 0.72
   2 !  122.5   2.6   9.5e-39   1.3e-35       1     111 []     748     852 ..     748     852 .. 0.94
   3 ?    0.5   0.7      0.71   9.7e+02      40      74 ..     920     954 ..     918     969 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9.8
                 TCHHHHHHHHHHHCT--SSS-CC CS
        HAND  77 eereekrkeeqekidnaepLtee 99 
                 +++e + + e+  id+ +++t e
  CCE29350.1 691 RTQELNARYEKLGIDDLQKFTSE 713
                 45666777888899999999987 PP

  == domain 2  score: 122.5 bits;  conditional E-value: 9.5e-39
                 XXXXXXXXXXXX..X----.--S--------GGC--S--CCHHHHHHHHHHHHHHCCT----CCCHTTTS.-SS.STTCHHHHHHHHHHHCT--SSS-C CS
        HAND   1 SvDkYYkdvlktgskkstkkpkapraPKqiniqdfqffpkeLkeLqekEqlaykKkigykvtlddkkeee.eeeekeeereekrkeeqekidnaepLte 98 
                 S+DkY+++++  +  k ++kpkapraPKqi +qd+qf+p++L++Lq++E+++y+K+igyk++l+d+++e+ +      ere++r+++q++idna+pLte
  CCE29350.1 748 SMDKYFRQAMFPN-PKGDAKPKAPRAPKQIPVQDYQFYPPRLRDLQDRETAFYRKEIGYKIPLPDGDAETlS------EREAERALDQQEIDNATPLTE 839
                 89********996.555689**********************************************988744......99******************* PP

                 CHHHHHHHHHHHS CS
        HAND  99 eeeeekeellseg 111
                 ee++ekeel+++g
  CCE29350.1 840 EEKAEKEELSTQG 852
                 **********997 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.71
                 CCHHHHHHHHHHHHHHCCT----CCCHTTTS-SS. CS
        HAND  40 keLkeLqekEqlaykKkigykvtlddkkeeeeeee 74 
                 ++++++ ++ +l  kK  +y+v+l++ k +++ ++
  CCE29350.1 920 ERMRKIENQRKLLRKKMSQYRVPLQQLKINYSVST 954
                 578888999999999999****9988887774332 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       2.5   3.4e+03      11      62 ..     271     322 ..     253     337 .. 0.63
   2 !   65.1   0.0   4.6e-21   6.4e-18       2     111 .]     484     597 ..     483     597 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.5
                 HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHH CS
  Helicase_C  11 kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqf 62 
                 +++ +++k  + +++ +++ + k  l+k++ ++++++     ++ e +l+q 
  CCE29350.1 271 NERLVDEKFDVCITSYEMILREKSHLKKFAWEYIIIDEAHRIKNEESSLSQI 322
                 4556666666777777766445666678888888888876666666444443 PP

  == domain 2  score: 65.1 bits;  conditional E-value: 4.6e-21
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHH...TTSSSEEEESGGGTSSSTSTTESEEEESSSS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfn...kgesdvLiatdvaerGidipkvnlVinfdlp 94 
                 k++ l +ll  le++g+++lif++  + l+   ++    + ++k+++++g + +++r+++++++n   ++++ +L++t++++ Gi+++ ++ V+ +d +
  CCE29350.1 484 KMAVLDKLLaRLEKQGSRVLIFSQMSRLLDIlEDYC--VFrEYKYCRIDGGTAHEDRIAAIDEYNkpgSEKFIFLLTTRAGGLGINLTTADIVVLYDSD 580
                 677788888889***************996654444..2357***********************87668888************************** PP

                 SSHHHHHHHHTTSSSTT CS
  Helicase_C  95 rnvtsyiqriGRtgRag 111
                 +n++   q+++R++R+g
  CCE29350.1 581 WNPQADLQAMDRAHRIG 597
                 ***************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   1.3e-14   1.9e-11       3     169 ..     178     338 ..     176     340 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 1.3e-14
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.... 96 
                 e+r+yQ   ++ l+ +l+ ++   g+++ + G GKTl  +++  +l++ +++    l++vp+ +l + +++ef+++++e +     +++g k+++    
  CCE29350.1 178 EMRDYQVAGLNWLI-SLH-ENGISGILADEMGLGKTLQTISFLGYLRHIAGITgPHLVVVPKSTL-DNWKREFARWTPEVN---VLVLQGAKEERttli 270
                 68999998887777.676.78899************************99998788899998776.67**********984...333333333334444 PP

                 ........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS..TTTHHHHHT---SEEEEEESS- CS
      ResIII  97 .kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.kswreilekfkeavllglTATp 169
                  ++  +++ ++++t+++++ +++        +l++ + ++iiiDEaHr++ + +s  +i++ f++  +l +T+Tp
  CCE29350.1 271 nERLVDEKFDVCITSYEMILREK-------SHLKKFAWEYIIIDEAHRIKNEeSSLSQIIRLFQSRNRLLITGTP 338
                 57778889*************99.......888888999**********998459*******************9 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.1   4.3e+03     113     158 ..     255     301 ..     246     343 .. 0.59
   2 !   19.5   0.0   3.3e-07   0.00046      50     254 ..     446     628 ..     406     638 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.1
                 EEEEEE-STHHH.HHHHHHHTTSSSEEEESSS--S--S---S-.... CS
      HDA2-3 113 nvlvvakskkel.dLiEalllGkklkikrysgeklydekkkkskdtk 158
                 nvlv    k e   Li+  l+  k+ +   s e++++ek   +k   
  CCE29350.1 255 NVLVLQGAKEERtTLINERLVDEKFDVCITSYEMILREKSHLKKFAW 301
                 55554444444467888888888888888888888888877773332 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 3.3e-07
                 HHHHHH.HHHHHHH-GGGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S-- CS
      HDA2-3  50 slticlenlslvanHPsLLvdHympkklllkelpeklaetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklyd 148
                 +l+i++ +l+   nHP+L  +   p    +  + e+l+++ gK++vl +l+  + ++       vl+ ++  + ld++E + + ++ k+ r +g +  +
  CCE29350.1 446 LLNIVM-QLRKCCNHPYLF-EGAEPGPPYT--TDEHLIYNAGKMAVLDKLLARLEKQG----SRVLIFSQMSRLLDILEDYCVFREYKYCRIDGGTAHE 536
                 455555.677777777764.5556655544..458*****************999999....9*********************************999 PP

                 S---S-..................-SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---.-------EEEEEETTSHHHHHHHH CS
      HDA2-3 149 ekkkkskdtkknsrktkeklkkkihsltihllsttrqltkdksllenikfdliiafDssvdtsspsveslrtqn.rkknklpiirlvpinSieHvkLcf 246
                 +      d++           +k  s ++++l ttr         + + +d+++  Ds+ +++ +   + r ++  + ++++++r v+ n ie   L++
  CCE29350.1 537 DRIAAI-DEY-----------NKPGSEKFIFLLTTRAGGLG---INLTTADIVVLYDSDWNPQADLQAMDRAHRiGQTKQVVVYRFVTDNAIEEKVLER 620
                 999888.444...........34455788888888877444...566678************9998888777762344559************999999 PP

                 TS-TT-HH CS
      HDA2-3 247 kkdedepe 254
                  +++ + +
  CCE29350.1 621 AAQKLRLD 628
                 85555544 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00014       0.2       2      41 ..     854     894 ..     853     902 .. 0.94
   2 !    7.0   0.0     0.005       6.8       2      21 ..     958     978 ..     957     986 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
                      SSSBHHHHHHHHHHHHHHT.TCHHHHHHHHTSS-HHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhG.nrWkkIaerlggRtekqcrsr 41 
                      g+W+  + ++++++  k+G  +++ Ia+++ ++t+ +++ +
       CCE29350.1 854 GNWSRRDFQQFVNGSGKYGrHDYNGIAHEIDSKTASEIKAY 894
                      79************************************987 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.005
                      SSSBHHHHHHHHHHHHHHT.T CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhG.n 21 
                      + +teeEd  Ll ++ k+G +
       CCE29350.1 958 KVYTEEEDRFLLVLLDKYGiD 978
                      678***************965 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     5e-07   0.00068      19     161 ..     198     342 ..     182     356 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5e-07
   SWI2_SNF2  19 kgGviWHtqGSGKsltmvflakklle.eelknpkvvvvtDRkdLdkQlsktfakageekp......kqaesrkeLkellekesekiifttiqKfeeeek 110
                  +G++    G GK+l+ + +   l++ +  + p++vvv  ++ Ld+  +++fa+ + e +       + e+++ ++e+l +e+ ++++t  + + +e++
  CCE29350.1 198 ISGILADEMGLGKTLQTISFLGYLRHiAGITGPHLVVV-PKSTLDN-WKREFARWTPEVNvlvlqgAKEERTTLINERLVDEKFDVCITSYEMILREKS 294
                 56777777899999999999999999557777777665.5778886.5666776543322111111345555566777877788888888888765433 PP

   SWI2_SNF2 111 eklevlsereniivlvDEaHRsqyg.elakklrkalpnaafigFTGTPilkk 161
                     +l++    ++++DEaHR + + +  +++ + ++   ++  TGTP++++
  CCE29350.1 295 ----HLKKFAWEYIIIDEAHRIKNEeSSLSQIIRLFQSRNRLLITGTPLQNN 342
                 ....5566666689*******987735678999****************976 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     7e-07   0.00096      18     149 ..     201     326 ..     181     346 .. 0.64
   2 ?   -3.7   0.0       6.4   8.8e+03      43      94 ..     495     542 ..     485     546 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7e-07
                 EEEESTTSSHHHH..HHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHH..HHH.HTTCSEEEEEHHHHHHH CS
                 xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx.xxxxxxxxxxxxxxxxx RF
        DEAD  18 lvaaeTGsGKTla..flipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardql..skl.dngvdivvgtpgrlddl 111
                 ++a e G GKTl    ++  l+++    g tg   l+v+P   L  +  +++ +++ +  ++vl++ g +++r  l  ++l d++ d+ ++  +++++ 
  CCE29350.1 201 ILADEMGLGKTLQtiSFLGYLRHI---AGITG-PHLVVVPKSTLD-NWKREFARWTPE--VNVLVLQGAKEERTTLinERLvDEKFDVCITSYEMILR- 291
                 677788999998722334444444...45666.568888987764.455566666665..4455444433333332113334788***********99. PP

                 HHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 112 lstgklnlsqvrflVlDEadrlldqgfsdfinrilnql 149
                  ++ +l+    +++++DEa+r+ ++  +  +++i++ +
  CCE29350.1 292 -EKSHLKKFAWEYIIIDEAHRIKNE--ESSLSQIIRLF 326
                 .66676677779***********99..55666666555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.4
                 TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  43 kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl 94 
                  +k+g ++li + +  L  ++l+++  f +   ++++ i gg+a +d ++++
  CCE29350.1 495 LEKQGSRVLIFSQMSRLL-DILEDYCVFRE---YKYCRIDGGTAHEDRIAAI 542
                 456666666666666554.44555545555...4667777777777776665 PP

>> DUF1086  Domain of Unknown Function (DUF1086)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   9.8e-07    0.0013      10      91 ..     824     909 ..     815     921 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.8e-07
     DUF1086  10 rkkarsdkdeplPllege...gkslevLGFnerqRkaflnalmRyGv.gdfdskelvrelkqktedeikaYgslFlrHlaeegadn 91 
                 r   +++ d+ +Pl e e    ++l+  GF +  R+ f +++   G  g +d + +++e+  kt  eikaY+ +F +  +e  + n
  CCE29350.1 824 RALDQQEIDNATPLTEEEkaeKEELSTQGFGNWSRRDFQQFVNGSGKyGRHDYNGIAHEIDSKTASEIKAYAKVFWQRYTEVADYN 909
                 3334455566668887651115678999***999999999998888777888889*********************9999876554 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     8e-05      0.11      96     164 ..     253     317 ..     236     325 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8e-05
                 -CHHHHHHHHHCT--HHHHHHHHHCCTSEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCCCHHHHHH CS
      DEAD_2  96 diedlvelgeklklCPYylsrelledadiiilpYqyLldekireslkgislknsivilDEAhNiedvce 164
                 +++ lv  g k +       r + e+ d+ i +Y+++l ek    lk  +   + +i+DEAh i++   
  CCE29350.1 253 EVNVLVLQGAKEERTTLINERLVDEKFDVCITSYEMILREKSH--LK--KFAWEYIIIDEAHRIKNEES 317
                 555666666666666677778889999***********99865..44..245567899******98654 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.17      54     104 ..     287     341 ..     246     350 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
      AAA_14  54 elilek...lkeekktylflDEiqevpewekalkslvd..egknldvivtGSnskl 104
                 e+il++   lk+   +y+++DE++++++ e+ l ++++  + ++ ++++tG  +++
  CCE29350.1 287 EMILREkshLKKFAWEYIIIDEAHRIKNEESSLSQIIRlfQ-SRNRLLITGTPLQN 341
                 34443323333345679********************9543.45599999986665 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.1   0.00022      0.31       5      82 ..     886     967 ..     882     972 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00022
  Occludin_ELL   5 ksaeqrerYkaeFnkeYke...YkelhaeleevskkfseLerelkelkegskeykkieeeilqeykklkk.dpeyqekkkrc 82 
                   k+a++ ++Y ++F + Y+e   Y++  + +e+ +++++++e++ k l+++ ++y+   +++  +y+  +  ++ y e++ r+
    CCE29350.1 886 KTASEIKAYAKVFWQRYTEvadYNKSIKVIEDGEERMRKIENQRKLLRKKMSQYRVPLQQLKINYSVSTTnKKVYTEEEDRF 967
                   5788999**********984446666666688899******************************98877577788888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1121  (0.0625244); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.45
# Mc/sec: 7468.49
//
Query:       CCE29351.1  [L=251]
Description: uncharacterized protein CPUR_03044 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-07   31.0   1.8    2.8e-07   30.6   1.8    1.1  1  DUF4588   Domain of unknown function (DUF4588)


Domain annotation for each model (and alignments):
>> DUF4588  Domain of unknown function (DUF4588)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   1.8   1.5e-11   2.8e-07      55     236 ..      27     201 ..      16     211 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.5e-11
     DUF4588  55 lslwteFqnAAkavtsLYkestdaqkrSldlgiqkGyqrrirDllaWvkkrrreirredlisflcgkaep.ekserertrerasprerevekdksssat 152
                  +l + F+ AA +vt+LYk+s       +      G  ++++Dll    k    ++  + ++ ++ ++e+ e   r+ ++++ +++e e e+  sss++
  CCE29351.1  27 EQLLDVFKAAALSVTKLYKTSA----VIESRARTEGFKDCLDDLLTYLDKENLGLKDGEALAIRKWATERlE--GRDINNQPITESEDEIERI-SSSPE 118
                 567889****************....66677778999*********************************44..4444555555555555544.55888 PP

     DUF4588 153 elsssveid.Lqpfreaialnsl.sgamsk.islavelrsptsfrpssvsakssrrrlailksledlsefesddlarhldsrkrsss 236
                  +  sve +   + + a + +sl ++  s+ +s++ e +s +++++ +  ++ss+   +i     dls++ s d ++ l s + s+s
  CCE29351.1 119 VTRTSVEPQpV-AAKRAESSKSLsESPKSSiVSIPEEPMSIVVPSQDTFTFQSSHPYPNIAT--LDLSDSRSRD-VQSLSSTRSSKS 201
                 88888998743.33333333333033333347899999999999999888888887766655..6677777777.344433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1957.41
//
Query:       CCE29352.1  [L=203]
Description: uncharacterized protein CPUR_03045 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-08   31.6   3.3    1.2e-07   31.2   3.0    1.3  1  Ion_trans  Ion transport protein


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   3.0   6.7e-12   1.2e-07       8     109 ..      65     167 ..      51     183 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 6.7e-12
                 HHHHHHHHHHHHHCCCSSSSHHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHH CS
   Ion_trans   8 illlillncvflaletyfpedelek..tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlse....esllllsvlrl 100
                  l  i+++++++ + ++++e++ ++  + le l l+f  +f+ e++  ++++g+    +Yl + + ++D lv+++s++  ++s+    +  +l+ vlrl
  CCE29352.1  65 LLANIFVQLIACEM-HQNDEEWVKNlsKSLESLGLIFSSLFLAELAACLFSFGI----SYLASCFHLFDALVIVLSFIIDIASRglteTIGSLVVVLRL 158
                 56678999999999.566665766679***************************....***********9999999984433334666889999***** PP

                 HGGGGGGHH CS
   Ion_trans 101 frvlrllkl 109
                 +r++r+   
  CCE29352.1 159 WRLARISEE 167
                 *****9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1227  (0.0684366); expected 358.6 (0.02)
Passed bias filter:                      684  (0.0381505); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 1643.75
//
Query:       CCE29353.1  [L=194]
Description: probable RRM-type RNA binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-16   59.4   0.0    3.3e-16   58.9   0.0    1.3  1  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R
  ------ inclusion threshold ------
      0.021   15.3   0.2      0.032   14.7   0.2    1.4  1  NPV_P10         Nucleopolyhedrovirus P10 protein
      0.051   13.6   0.6       0.06   13.4   0.6    1.1  1  Spore_III_AF    Stage III sporulation protein AF (Spore_III_A
      0.076   13.9   4.8       0.11   13.4   4.8    1.2  1  PRKG1_interact  cGMP-dependent protein kinase interacting dom
       0.08   13.0   0.0       0.14   12.2   0.0    1.4  1  Nup35_RRM_2     Nup53/35/40-type RNA recognition motif
       0.08   10.8   1.6       0.09   10.7   1.6    1.0  1  V_ATPase_I      V-type ATPase 116kDa subunit family
        0.1   12.5   0.0       0.21   11.4   0.0    1.6  1  RRM_occluded    Occluded RNA-recognition motif
       0.11   12.3   5.8       0.17   11.7   5.8    1.3  1  DivIC           Septum formation initiator
       0.17   11.8   1.1       0.22   11.4   1.1    1.1  1  EMP24_GP25L     emp24/gp25L/p24 family/GOLD
       0.19   11.8   0.9        0.3   11.1   0.9    1.3  1  DUF1664         Protein of unknown function (DUF1664)
       0.25   11.0   4.3       0.36   10.5   4.3    1.1  1  GrpE            GrpE
       0.31   11.5   5.4       0.55   10.7   5.4    1.3  1  ZapB            Cell division protein ZapB


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   2.2e-19   3.3e-16       1      70 []      74     143 ..      74     143 .. 0.99

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 2.2e-19
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +fVgn+ ++++ ee+ ++F+ +G+i+++++  d  tg++kg+a+VeF+ +   ++Al  ln+  ++gr++k
  CCE29353.1  74 IFVGNVDYSASPEEIQTHFQSCGDINRVTILLDkFTGSPKGYAYVEFTEPNLVAQALV-LNESLFKGRNIK 143
                 8*********************************************************.*********996 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   2.1e-05     0.032      17      58 ..      28      69 ..      21      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.1e-05
     NPV_P10 17 ddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkv 58
                ++ ++a++ +v++++e+ +++ e+++ L++q+a La+ ++++
  CCE29353.1 28 EEEITAMKRRVAEMEEEAKKLREMQATLEQQTADLADDKESI 69
                5789*******************************9866655 PP

>> Spore_III_AF  Stage III sporulation protein AF (Spore_III_AF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.6     4e-05      0.06      54     130 ..      20     107 ..       2     144 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4e-05
  Spore_III_AF  54 esesleeeleeikeegeelkeenkke.aleeyeqrlekqikeelke.egyevkdveve...ieedees......rfgeiekvtitlte 130
                   e+ ++ +e+eei +  ++ +e ++++  l+e++  le+q ++++++ e ++ +++ v    +++ +e+      + g+i++vti l +
    CCE29353.1  20 ETDMTAAEEEEITAMKRRVAEMEEEAkKLREMQATLEQQTADLADDkESIDARSIFVGnvdYSASPEEiqthfqSCGDINRVTILLDK 107
                   34444445555555555444333333489*****************99****999877666555555556667779999999999988 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   4.8   7.4e-05      0.11      44      83 ..      16      55 ..       2      69 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.4e-05
  PRKG1_interact 44 svskrssllelekrerrslerkiseleeelkeleeLraen 83
                    + + ++ ++ +e++e  +++r+++e+eee+k+l+e++a  
      CCE29353.1 16 RQEPETDMTAAEEEEITAMKRRVAEMEEEAKKLREMQATL 55
                    45567889999**********************9998653 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.1e-05      0.14      16      53 .]      87     130 ..      81     130 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  Nup35_RRM_2  16 lVlehFasfGeIvkhyvp......kevsvmyvkfesekdaekAL 53 
                  ++  hF+s+G I++  +       + + ++yv+f  +   ++AL
   CCE29353.1  87 EIQTHFQSCGDINRVTILldkftgSPKGYAYVEFTEPNLVAQAL 130
                  5667**********66556677786699**********999998 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.6   6.1e-05      0.09      59     125 ..      17      85 ..       1     105 [. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.1e-05
  V_ATPase_I  59 a..eesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeeeeee 125
                 +  e++++a+ee+e+  +++++ ++eee k+l+e + +l++++ +l + k+ +   + f+ + + +++ 
  CCE29353.1  17 QepETDMTAAEEEEITAMKRRVAEMEEEAKKLREMQATLEQQTADLADDKESIDARSIFVGNVDYSASP 85 
                 123688899999************************************999999988888766433333 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014      0.21      11      71 ..      81     145 ..      71     149 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
  RRM_occluded  11 DtvnkariralveekegeikkivLvpdh.eG.....AivefkdekiagkasLaLdgsefegkklrcG 71 
                      + ++i++++++  g+i+++ +  d+  G     A vef++ + +++a L L+ s f+g+++++ 
    CCE29353.1  81 YSASPEEIQTHFQSC-GDINRVTILLDKfTGspkgyAYVEFTEPNLVAQA-LVLNESLFKGRNIKVT 145
                   556778888999998.999988877765322333359***********97.89***********986 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   5.8   0.00012      0.17      20      60 ..      32      72 ..      27      73 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXX CS
       DivIC 20 kqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieer 60
                 ++k+ +a+ ++e +kl++ ++ Le++ +dL +d++ i++r
  CCE29353.1 32 TAMKRRVAEMEEEAKKLREMQATLEQQTADLADDKESIDAR 72
                678999********************************976 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.1   0.00015      0.22     105     157 ..      23      75 ..       4      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
  EMP24_GP25L 105 kdsakkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvw 157
                   ++a +e+++ +++++ ++ee  +++++ q  l+++ + l d  es+  r ++
   CCE29353.1  23 MTAAEEEEITAMKRRVAEMEEEAKKLREMQATLEQQTADLADDKESIDARSIF 75 
                  457789****************************************9999776 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.9    0.0002       0.3      75     120 ..      17      62 ..      13      66 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
     DUF1664  75 ldeqkeiskeikeevtevredlseigedvesvkeavegleskleri 120
                 ++  ++++++ +ee+t++++ ++e++e+ ++++e+  +le++ +++
  CCE29353.1  17 QEPETDMTAAEEEEITAMKRRVAEMEEEAKKLREMQATLEQQTADL 62 
                 56678899999*****************************998776 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.3   0.00024      0.36       5      55 ..      15      65 ..       6      76 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00024
                ..CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHH CS
        GrpE  5 eeeeeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekee 55
                 ++e+e+d +++ eee+++++++v+e++e+ ++l++    l+++t++ +++
  CCE29353.1 15 ARQEPETDMTAAEEEEITAMKRRVAEMEEEAKKLREMQATLEQQTADLADD 65
                6789999***************99999988886665555555555544433 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.4   0.00037      0.55      18      61 ..      29      72 ..      28      73 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00037
        ZapB 18 dtitlLqmeieeLkeeneelkeenreleeeneqlkeereawqer 61
                ++it+++ +++e++ee ++l e ++ le++   l +++e++ +r
  CCE29353.1 29 EEITAMKRRVAEMEEEAKKLREMQATLEQQTADLADDKESIDAR 72
                689********************************999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1894  (0.105639); expected 358.6 (0.02)
Passed bias filter:                     1210  (0.0674884); expected 358.6 (0.02)
Passed Vit filter:                       209  (0.0116571); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 1443.57
//
Query:       CCE29354.1  [L=833]
Description: probable ubiquitin-protein ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-96  321.3   0.0    9.9e-96  320.8   0.0    1.2  1  HECT      HECT-domain (ubiquitin-transferase)
      4e-34  116.4  23.7      2e-12   47.0   5.3    4.0  4  WW        WW domain
    1.1e-20   73.8   0.1      8e-20   71.1   0.0    2.3  2  C2        C2 domain
  ------ inclusion threshold ------
       0.52    8.7  10.1       0.77    8.2  10.1    1.1  1  Rrn6      RNA polymerase I-specific transcription-initiation 


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.8   0.0   2.2e-99   9.9e-96       2     305 ..     529     831 ..     528     833 .] 0.96

  Alignments for each domain:
  == domain 1  score: 320.8 bits;  conditional E-value: 2.2e-99
                 HHHHHHT-GGGSSEEESSTTSSSEEE-TTHHHHS.....HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT-.---TCHHHHH-HHHHHHHHHHH..HS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   2 llskelldpklglfeeesedsgtlypkpssseee.llklfeflGkvlGkaiyeeilldlpfsraflkfllgeekitledleeidpelakslkellsles 99 
                 lls+e+++p + lfe++++d++tl+++p s  +  +l++f+f+G+v+G+ai++++ ld  f  a++k++lg + ++l+d+e +d ++++sl+++l  ++
  CCE29354.1 529 LLSHEMFNPFYCLFEYSAHDNYTLQINPHSGINPeHLNYFKFIGRVVGLAIFHRRFLDAFFIGALYKMVLG-KAVALADMEGVDADFHRSLQWML--DN 624
                 89**************************98776698899********************************.6**********************..44 PP

                 -GGG...GT-BSEEEEE.TTEEEEEESSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS.--HH CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 100 nteevedlaLtFtipen.agasatieLipnGanipVtnenkkeYiklyvnyllkksvekqleaflkGfsevipskalklfdaeelellisGedelidve 197
                 +  +   l+ tF+ + + +g  +t +Lip+G+ni+VtnenkkeY++l+v+++++k++++q++af++Gf+e+ip++++++fd++elelli G +e idv+
  CCE29354.1 625 DI-SGGILEQTFSTEDErFGVLTTEDLIPDGRNIDVTNENKKEYVDLMVKWRIEKRIAEQFQAFKEGFHELIPQDLINVFDERELELLIGGIAE-IDVD 721
                 44.3467899***99999***************************************************************************9.**** PP

                 HHHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-.....B--EEEEE-S..-TTS--EEEGGGTEEEE---SSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 198 dlrrnteykggynaesetiewlweilkefspeekrlfLqFvTgssrlPlgGfael.....hpkftierkskedetrLPtahTCfnlLklpdYsskeilk 291
                 d++++t y+g y++++e+i+++w+++++++ e+k+++LqF+Tg+sr+P++Gf+ l      ++ftie+++  + t+LP+ahTCfn+++lp+Y+s e+l+
  CCE29354.1 722 DWKKHTDYRG-YTESDEVIQNFWQVVRSWDGEQKSRLLQFTTGTSRIPVNGFKDLqgsdgPRRFTIEKTG--ELTNLPKAHTCFNRIDLPPYKSMETLQ 817
                 ********75.***********************************************999*******99..*************************** PP

                 HHHHHHHHHHH--X CS
                 xxxxxxxxxxxxxx RF
        HECT 292 ekLltAieetegFe 305
                 +kL++A+eet gF+
  CCE29354.1 818 QKLTIAVEETMGFG 831
                 *************8 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   1.2     3e-14   1.4e-10       1      31 []     229     258 ..     229     258 .. 0.98
   2 !   47.0   5.3   4.4e-16     2e-12       1      31 []     353     382 ..     353     382 .. 0.99
   3 !   40.5   0.3   4.8e-14   2.2e-10       1      31 []     412     441 ..     412     441 .. 0.99
   4 ?   -2.6   0.1       1.4   6.1e+03       4      10 ..     722     728 ..     721     732 .. 0.79

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 3e-14
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP+GWe + d   Gr+YY++h+T++t+W +P
  CCE29354.1 229 LPAGWERREDNL-GRTYYVDHNTRTTSWNRP 258
                 8***********.*****************9 PP

  == domain 2  score: 47.0 bits;  conditional E-value: 4.4e-16
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LPpGWe++w+p+ Gr Y+++h+T++t+W++P
  CCE29354.1 353 LPPGWEQRWTPE-GRSYFVDHNTRTTTWVDP 382
                 8***********.****************99 PP

  == domain 3  score: 40.5 bits;  conditional E-value: 4.8e-14
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP+GWe++ + +  rvY+++h+T++t+W++P
  CCE29354.1 412 LPSGWEMRLTNT-ARVYFVDHNTKTTTWDDP 441
                 8***********.*****************9 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1.4
                 TEEEEE- CS
          WW   4 GWeeqwd 10 
                 +W++++d
  CCE29354.1 722 DWKKHTD 728
                 7****98 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   1.8e-23     8e-20       2      91 ..      14     103 ..      13     116 .. 0.90
   2 ?   -1.0   0.0      0.48   2.1e+03      15      52 ..     321     360 ..     313     367 .. 0.74

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 1.8e-23
                 EEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEE..EEEEEEEEGHHH CS
          C2   2 klevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskdd..fiGkveiplstl 91 
                 +l+vt+i A +L ++d+++ +dp+++++++g+q++ T+v k++lnP Wne+f f  +e   + L v+Vfd+++++k+d  f+G+++i++ ++
  CCE29354.1  14 NLRVTIIAADGLYKRDVFRFPDPFAVATINGEQTKTTTVSKRTLNPYWNESFDFRANE--GSILAVQVFDQKKFKKKDqgFLGVINIRVGDV 103
                 69***************************99999999999**************8888..*************966656*********9984 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.48
                 SSSTTSSCEEEEEEEEECEEEEEE-.SCSSS..SSSEEEEE CS
          C2  15 nkdkkgssdpyvkvsldgkqkakTr.vikns..lnPvWnek 52 
                 n  ++gs++p + v+  ++++  T  +++ +  l P W+++
  CCE29354.1 321 NGAASGSPNPNANVNA-NATVMHTGaTMPGTgeLPPGWEQR 360
                 4455899*********.777777764775554477999987 PP

>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  10.1   0.00017      0.77     665     811 ..     171     325 ..     134     344 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00017
        Rrn6 665 aeasslssslssss.........ssssssssssssedpelsredpldalsrytklikssptslsrsvsniLshWelgsdpaeydwqrtesaleaeeqrq 754
                 ae +++ss ++++s         ++    s s+ ++ ++ s+++p+++ls +++ +  +p    r++ n+     +++++++ +w r ++  ++e ++ 
  CCE29354.1 171 AEGRPASSLATPNSafggpppslPHHAVASGSTAAANAANSTSRPTSQLSPFEDNQGRLPAGWERREDNLGRTYYVDHNTRTTSWNRPTAGGATEARND 269
                 3444445555555577776665433333333333333333336677778888888888877777************************99999888877 PP

        Rrn6 755 rarrkrekrrrrkeklklasraeasssssssqssssksssssssqlpsssqvptlpd 811
                 r+  ++  r+r++++  l++ +  + s+   q+++++ +++ +++ +sss++  +++
  CCE29354.1 270 REAATQVERQRHQNR-TLPEDRTGANSPTLFQQQQQQPQQPGGQPQLSSSPPNGAAS 325
                 778888888888888.45555555678888888888888888888888887776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 5482.40
//
Query:       CCE29355.1  [L=211]
Description: probable NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-22   79.4   0.0    2.8e-22   78.9   0.0    1.2  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   1.6e-26   2.8e-22       4     130 ..      87     194 ..      85     195 .. 0.88

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 1.6e-26
                  HHHHHT-TTTTHHHHHHTEEEEEETTT-S--HHHHHHTHTTTSEEEEEESBE...EEEHHHHHHHHGGGSSEEEEESHHHHH-TGGGSTT-TEE-HHH CS
  Oxidored_q6   4 csisllaleedlldllelielryhetlladskeeeieakekeadvlvveGavtrkpkealellkelaekakaviavGtCAafGGipaaannpsvgeev 101
                  c +++++l+++ +d       r+++ + a+++         + dv++v G++t+k+++al++++++++++++vi++G+CA  GG ++ +   sv   v
   CCE29355.1  87 CAVEMMHLSTPRYDQ-----DRLGIIFRASPR---------QSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSY--SV---V 165
                  888888888888888.....778888888888.........9********************************************4433..33...4 PP

                  HHHHC.S-E.EEE-SSS--HHHHHHHHHH CS
  Oxidored_q6 102 gellevvpvdinipGCPphpeailetlla 130
                  +++++ vpvdi++pGCPp+ ea+++++ +
   CCE29355.1 166 RGCDRIVPVDIYVPGCPPTSEALMYGIFQ 194
                  69**********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1607.71
//
Query:       CCE29356.1  [L=604]
Description: related to capsular associated protein (CAP10) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-12   45.1   4.2    8.2e-12   44.7   0.0    2.4  3  Glyco_transf_90  Glycosyl transferase family 90


Domain annotation for each model (and alignments):
>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.6   0.0    0.0059   1.1e+02       8      91 ..     114     191 ..     110     203 .. 0.73
   2 ?   -3.9   0.4      0.27   4.9e+03     152     170 ..     362     380 ..     359     398 .. 0.82
   3 !   44.7   0.0   4.6e-16   8.2e-12     206     322 ..     468     585 ..     460     593 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.0059
  Glyco_transf_90   8 dyfrvieeDLkpwretgitreaverakrkalfrlviingrvyvekykksvqtrdvftiwgilqLlrkypgklpDlelmfncdDr 91 
                      d+f  i +DL+p+    +    ++r  ++ +  + + ng ++ +    + +    + +w    L+ +++  lpD+++ +n +D 
       CCE29356.1 114 DFFDRIYKDLTPFWA--LNASDIKRRANSWHHVVRVRNGTAHGDG--DVTGLVPWLQLW--TALVEEMARFLPDVDMPINYMDE 191
                      789999999999987..4444555555777777788888888776..555555455555..46788888889999999999986 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.27
  Glyco_transf_90 152 kvkweerepyaywkGnpsv 170
                        +w +++    w+G+ s 
       CCE29356.1 362 GSSWARKKTGVVWRGEASG 380
                      57899999999****8765 PP

  == domain 3  score: 44.7 bits;  conditional E-value: 4.6e-16
  Glyco_transf_90 206 kessledqckhkYkiyieGvaasvsekyilacdslvllvkpeyydffsreLkplehYvPikskdklrdlkeavdwgnah....dekaqeiaeeg 295
                       + ++++q ++k+   ++G + s +++  l   sl l+  + y ++    L+p++h+vP+++  + +dl  ++d+  ++    d+ a+ ia++g
       CCE29356.1 468 DHLPMKKQYEYKFLPDVDGNSFSARFRGFLRSTSLPLKA-TVYAEWHDDRLTPWVHFVPFDN--TFQDLYPLLDYFSDDseagDAAARFIAQQG 558
                      4667788888888889********************985.78******************99..9**********87662222567999***** PP

  Glyco_transf_90 296 seFireeLkmddvydYmfhLlteYakl 322
                      + ++++ L+ +d+  Y ++Ll e+a++
       CCE29356.1 559 QVWAEKALRREDMRLYVWRLLLEWARV 585
                      ************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4572.28
//
Query:       CCE29357.1  [L=656]
Description: related to GYP1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-49  167.8   0.0    4.3e-49  167.1   0.0    1.3  1  RabGAP-TBC  Rab-GTPase-TBC domain
  ------ inclusion threshold ------
        5.4    6.2   7.2        8.2    5.6   7.2    1.2  1  ORC6        Origin recognition complex subunit 6 (ORC6)


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.1   0.0   4.8e-53   4.3e-49       2     214 ..     343     596 ..     342     597 .. 0.93

  Alignments for each domain:
  == domain 1  score: 167.1 bits;  conditional E-value: 4.8e-53
  RabGAP-TBC   2 elRgevWklllgyep...............evkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynp 85 
                 e+R+  W+lll y p               e+ +  +++ ++   +k +s+     ++  ++qI+ Dvprt p  e  +++ +q++LeriL+ +++++p
  CCE29357.1 343 EVRAMTWQLLLSYMPtnserrittlerkrkEYTDGVRQAFERVGTSKASSGRARGLDEAVWHQISIDVPRTNPRIELYSYEATQRSLERILYLWAVRHP 441
                 5899*********99**********99998888888999999999999999999999999*************88************************ PP

  RabGAP-TBC  86 evgYcqGmndivapll.........................lvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkee 159
                 + gY+qG+nd+v p++                         ++   e ++Fwc+++Ll  ++++d y+  +pg++r++  l++l  ++d  l+khl++e
  CCE29357.1 442 ASGYVQGINDLVTPFFqvflglyitdpniesgmdpgqlprsVLDAVEADSFWCLTKLL--DGIQDHYIVAQPGIQRQVGALRDLTARIDATLAKHLEQE 538
                 *********************9999999999999999999888888899*********..*************************************** PP

  RabGAP-TBC 160 gldlelfaikwfltlflrefpletvlrlwDlll.ege...kfvllrvalailklleeel 214
                 g+++ +f+++w+++l++re+++++++r+wD++l e++   +f +l+v++a+l +++++l
  CCE29357.1 539 GVEFIQFSFRWMNCLLMREISVKNIIRMWDTYLaEEQgfsEF-HLYVCAALLVKWSDKL 596
                 ******************************555255589556.*******997777776 PP

>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.2   0.00092       8.2      84     181 ..     121     220 ..     112     312 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.00092
        ORC6  84 sLsnsssatstPskspsspstdpkslrkqlfsTPtKsktlktalsa.sksssplkrrrklaneedgeeeeed.apswvstsirdsrpeisrtlspsksl 180
                 sLs + + ++tP ++ s + ++ +s+++   sT   s++lk+ +s+ s+ +   k+  + + ++d+++++   +ps ++ + r +r  +s++++ ++++
  CCE29357.1 121 SLSVTANRPRTPPSTSSGKGRQSESTPPPRGSTGGNSPPLKSYISFlSNTNDDWKTDEDEMLGYDDDDGDDFgLPSLSNMKRRSKRMATSKQNKAESQA 219
                 57888889999988888888899**********************************************99999*999999997777777776554444 PP

        ORC6 181 g 181
                 +
  CCE29357.1 220 N 220
                 3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 4871.57
//
Query:       CCE29358.1  [L=550]
Description: probable heterogeneous nuclear ribonucleoprotein HRP1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-34  116.7   0.4    3.1e-16   59.0   0.0    2.4  2  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    1.1e-10   41.5   1.6    0.00023   21.2   0.0    3.1  3  RRM_7         RNA recognition motif
      3e-06   27.1   0.1       0.04   13.9   0.0    2.4  2  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
  ------ inclusion threshold ------
      0.055   13.5   0.2        7.7    6.6   0.0    3.0  3  RRM_3         RNA binding motif
       0.23   11.4  42.6      0.013   15.5  34.7    2.0  2  TFIIA         Transcription factor IIA, alpha/beta subunit
          8    5.9   9.1         13    5.2   9.1    1.2  1  Exonuc_VII_L  Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.1   1.1e-18   3.2e-15       2      50 ..     120     169 ..     119     185 .. 0.94
   2 !   59.0   0.0     1e-19   3.1e-16       1      57 [.     203     260 ..     203     262 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 1.1e-18
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHH CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeske 50 
                 f+g+L++++t++ L+e+F++fG++++++++rd +tg+s+gf+f +F++  
  CCE29358.1 120 FIGGLNWETTDDSLREYFEQFGEVTECTVMRDsSTGRSRGFGFLTFKDAK 169
                 9**********************************************976 PP

  == domain 2  score: 59.0 bits;  conditional E-value: 1e-19
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAle 57 
                 +fVg++++++t++e +++F +fG++++++l+ d  tg+++gf+fV+Fes+   e++++
  CCE29358.1 203 IFVGGVSQETTDQEFRDYFAQFGRVVDATLMMDkDTGRPRGFGFVTFESEAGVEACID 260
                 8*******************************************************97 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.5e-08   0.00023       3      67 ..     118     175 ..     116     185 .. 0.79
   2 !   18.3   0.0   6.3e-07    0.0019       2      68 ..     201     260 ..     200     271 .. 0.81
   3 ?   -3.9   0.1       5.2   1.6e+04      72      90 ..     330     348 ..     324     352 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 7.5e-08
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLl 67 
                 k+F+GGl ++ t+++l + f++fg+v+       e++  + +++   +g+ fl f+d k+v+ ++
  CCE29358.1 118 KMFIGGLNWETTDDSLREYFEQFGEVT-------ECTVMRDSSTGRSRGFGFLTFKDAKTVNIVM 175
                 99**********************986.......33333333333457***********998654 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 6.3e-07
       RRM_7   2 rkvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLle 68 
                  k+FvGG+  + t++e  + f +fg+v vd      +++ +       +g+ f+ fe+e  v+a ++
  CCE29358.1 201 SKIFVGGVSQETTDQEFRDYFAQFGRV-VDATLMMDKDTGR------PRGFGFVTFESEAGVEACID 260
                 69***********************97.5654444443333......369*********99998775 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 5.2
       RRM_7  72 eeeeelylklssrrlkske 90 
                 +  ++++  ++s++  +++
  CCE29358.1 330 QRMQQYFAMMQSQMAMNRN 348
                 4446777777887776665 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00014      0.43      17      47 ..     133     169 ..     124     173 .. 0.83
   2 !   13.9   0.0   1.3e-05      0.04       4      46 ..     203     252 ..     201     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00014
  Nup35_RRM_2  17 VlehFasfGeIvkhyvp......kevsvmyvkfesek 47 
                   +e+F++fGe+++  v       +++ + +++f++ k
   CCE29358.1 133 LREYFEQFGEVTECTVMrdsstgRSRGFGFLTFKDAK 169
                  589**********888777777788889999998765 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.3e-05
  Nup35_RRM_2   4 vaVsGydteli.elVlehFasfGeIvk......hyvpkevsvmyvkfese 46 
                  + V G+++e+  ++ +++Fa+fG++v+      ++ ++ + + +v+fese
   CCE29358.1 203 IFVGGVSQETTdQEFRDYFAQFGRVVDatlmmdKDTGRPRGFGFVTFESE 252
                  7899****999899999**********55554444447789999999987 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0026       7.7       5      43 ..     120     158 ..     118     188 .. 0.82
   2 ?    3.5   0.0     0.025        73       5      30 ..     204     229 ..     202     303 .. 0.65
   3 ?   -3.5   0.0       3.8   1.1e+04      82      97 ..     355     370 ..     353     374 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0026
                 EEEE-SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEEEE CS
       RRM_3   5 klsGlnkelsredikellsklgevayvdyekgdkegevr 43 
                 ++ Gln e++ ++++e ++++gev    + ++ ++g  r
  CCE29358.1 120 FIGGLNWETTDDSLREYFEQFGEVTECTVMRDSSTGRSR 158
                 56789*******************988888887777655 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.025
                 EEEE-SSS--HHHHHHHCHCCS-ECE CS
       RRM_3   5 klsGlnkelsredikellsklgevay 30 
                 ++ G+++e++ +++++ ++++g v  
  CCE29358.1 204 FVGGVSQETTDQEFRDYFAQFGRVVD 229
                 57789*****************8853 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.8
                 HHHHHHHHHHHCC--- CS
       RRM_3  82 ywkkiledkqkkknna 97 
                 +w+++l+ +q ++  +
  CCE29358.1 355 MWQQMLQMQQMQQMMG 370
                 6999999999988554 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.0      0.14   4.3e+02     202     360 ..      54      74 ..      14     140 .. 0.54
   2 ?   15.5  34.7   4.4e-06     0.013      70     231 ..     283     439 ..     255     482 .. 0.50

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
       TFIIA 202 qqqqqqqqqqqqvqqqqqeesqqaqqasqeqvagsqvessqtdgaedaleeespvlegelsaeeeagaqkeelsreeidrireealkakelekeskkkk 300
                   qq+      +                                                                                       
  CCE29358.1  54 YAQQER-----T--------------------------------------------------------------------------------------- 60 
                 111111.....1....................................................................................... PP

       TFIIA 301 raeessladlseilqlDGagddsdeeeeeeesdedsdsessddedeqveEDplNSd.DDvd 360
                                                                + +D+   + DD d
  CCE29358.1  61 -----------------------------------------------MHQDAGEDEeDDDD 74 
                 ...............................................22222222212222 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.4e-06
       TFIIA  70 qalqasaaaasqapastsqslpslvipagksvqsltanssaataatfslpak.leppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqqvvqq.. 165
                 +++  +     ++ ++ ++  +s++  ag   q++ a+ s ++ +t ++ a+  +  +q+ a ++ q a ++  ++n+++   qq+++ ++ q+++   
  CCE29358.1 283 EEE--E----AAKRNKFKKDDQSVHGGAGGMSQQMAASGS-NGGMTPQVMAQyFQRMQQYFAMMQSQMAMNR--NMNTNPAMWQQMLQMQQMQQMMGrg 372
                 222..1....123344444445555555544444444444.3333333333303334455556666666644..5677999999999877777766568 PP

       TFIIA 166 sqgsaaqssvaalqaq.sqqaqalaepqqq.lekqqqqqqqqqqqqqqqqvqqqqqe.....esqqaqqasqe 231
                 + g++ q+ + ++++q  qq+q++ + qqq ++    qqqqq+qq qqq v   q++     +++q +q+sq+
  CCE29358.1 373 GGGNNPQNMMGNMNPQmMQQMQQMQQMQQQmMQ----QQQQQPQQSQQQ-VAP-QMQipdptNYSQFHQQSQS 439
                 999999999999999854444444444444222....111122221111.111.1112223233333333222 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   9.1    0.0044        13     132     222 ..     323     419 ..     312     443 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0044
  Exonuc_VII_L 132 taaAelvvpdkaeleeqleelerrlekaikrlleekkqrleklasrl......kspeellerkrqrldeleerleralkkqlkkkrerleelkerlk 222
                     +A++  + ++ ++   ++++ + + +++ ++ ++  +++++++ +      ++p++++ + + ++ +  +++++++++ +++++++ ++ ++++ 
    CCE29358.1 323 QVMAQYFQRMQQYFAMMQSQMAMNRNMNTNPAMWQQMLQMQQMQQMMgrggggNNPQNMMGNMNPQMMQQMQQMQQMQQQMMQQQQQQPQQSQQQVA 419
                   4444444433333322222222222222222222333333344444455567667888888887777777888888666667777777777666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3078  (0.171677); expected 358.6 (0.02)
Passed bias filter:                      876  (0.0488594); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.89u 0.26s 00:00:01.14 Elapsed: 00:00:00.43
# Mc/sec: 3831.45
//
Query:       CCE29359.1  [L=995]
Description: related to C2H2 zinc finger protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-14   53.5   1.9      3e-14   52.7   1.9    1.4  1  Fungal_trans  Fungal specific transcription factor domain
    1.6e-06   28.3  13.5     0.0066   16.9   2.0    3.1  2  zf-C2H2       Zinc finger, C2H2 type
     0.0071   17.1  10.4          1   10.3   2.6    3.4  2  zf-C2H2_4     C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   1.9     5e-18     3e-14       2     175 ..     517     686 ..     516     751 .. 0.79

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 5e-18
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafpl.raeilihedfsspssslwilqsL 97 
                   d++++  hp++pi+h+ ++ + t        +++++ l ++ +a+Ga  +++ t++++    s    ++ f l + + +     ss + sl + q+ 
    CCE29359.1 517 DIYWDKMHPLYPIIHRATIEDGT--------NESPEQLHALRCAMGAVATQNLTHRDHRINGSQL--HA-FALqSTKPF----TSSARWSLPTMQCI 598
                   89*********************........99************************88777743..22.333033333....4666667******* PP

  Fungal_trans  98 lllelyektssdralher.......hhgvavrlarslgLhrnpsyvgkks.lwklweeeaesrrRlwwaaFylDktialklGrpp...l 175
                   ll+e+y   +++ +  ++       +  +  +++ +  +  +p+ +g+k+  wk w++  es rRl  a+F l ++  +++  p+   +
    CCE29359.1 599 LLCEYYARFRGRHKEDYKpssqfrtVYQMIGQMVSDHCFTSRPNCKGTKQqRWKAWIH-VESCRRLLSACFLLSVHGMFYHEQPYsdaF 686
                   ************************65555555***************9999*******.*************98887777777775433 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   4.0   2.6e-06     0.016       1      23 []     156     180 ..     156     180 .. 0.97
   2 !   16.9   2.0   1.1e-06    0.0066       2      23 .]     186     209 ..     185     209 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.6e-06
                 EEETTTT..EEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCg..ksFkrksnLkrHirtH 23 
                 ++C+ C   k+F+r ++L+rH+ +H
  CCE29359.1 156 HTCDMCRppKTFTRAEHLRRHQLSH 180
                 79*********************99 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.1e-06
                 EET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCp..dCgksFkrksnLkrHirtH 23 
                  Cp  +C+k+F r ++L rH+++H
  CCE29359.1 186 SCPvpGCDKTFHRHDLLARHQQKH 209
                 69999******************9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   2.6   0.00018         1       1      23 [.     156     180 ..     156     181 .. 0.95
   2 !    9.8   1.1   0.00027       1.6       2      23 ..     186     209 ..     185     210 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
   zf-C2H2_4   1 fkCpiC..gksFsskkaLlrHlkth 23 
                 ++C+ C  +k+F++ ++L+rH ++h
  CCE29359.1 156 HTCDMCrpPKTFTRAEHLRRHQLSH 180
                 68********************999 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00027
   zf-C2H2_4   2 kCpi..CgksFsskkaLlrHlkth 23 
                  Cp+  C+k+F++++ L rH ++h
  CCE29359.1 186 SCPVpgCDKTFHRHDLLARHQQKH 209
                 599999****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (995 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.48
# Mc/sec: 6207.51
//
Query:       CCE29360.1  [L=430]
Description: related to choline-phosphate cytidylyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-30  104.0   0.0    1.7e-29  102.9   0.0    1.6  2  CTP_transf_like  Cytidylyltransferase-like
  ------ inclusion threshold ------
       0.18   11.0   0.0       0.26   10.5   0.0    1.2  1  HIGH_NTase1      HIGH Nucleotidyl Transferase


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.6   1.4e+04      43      58 ..      45      60 ..      34      67 .. 0.73
   2 !  102.9   0.0   1.8e-33   1.7e-29       1     143 []     149     277 ..     149     277 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.6
                     SCSSTHHHHHHHHHHH CS
  CTP_transf_like 43 kplasaeeRlemlela 58
                      + a+a++R + l+ a
       CCE29360.1 45 DTTAPASDRQHLLHNA 60
                     6789999999998877 PP

  == domain 2  score: 102.9 bits;  conditional E-value: 1.8e-33
                      EEEE--TT--HHHHHHHHHHHHHSSES.EEEEEESSTHCSST-.SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEHH CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleed.livgvpsdeppkkkk.kplasaeeRlemlelakevdevisvdpweltrevlkklkpdklylvigad 92 
                      +a+G+FD++HlGH+r+leqakk + ++ l+vgv+ de+++  k  +++sa+eR e ++++k+vdevi+++pw +t e+l+  + d  y+++++ 
       CCE29360.1 149 YADGVFDLFHLGHMRQLEQAKKTFPNTiLVVGVTGDEETHMRKgLTVMSAKERAESVRHCKWVDEVIEDCPWIVTAEFLQANQLD--YVAHDDL 240
                      79****************************************77*****************************************..*****99 PP

                      HHHHHHCHHHHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHHHH CS
  CTP_transf_like  93 vledfsewkeleeilgnvklvvvsrpekqanvllkaekrtngiSstkirer 143
                      ++       e ++i+   k +++          ++ ++rt+g+S+t i++r
       CCE29360.1 241 PYGAD----EGDDIYQPIKAAGM----------FLVTQRTEGVSTTGIITR 277
                      98875....**************..........*************99976 PP

>> HIGH_NTase1  HIGH Nucleotidyl Transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.9e-05      0.26      13      40 ..     157     184 ..     154     218 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.9e-05
  HIGH_NTase1  13 fHnGHlyhlekakeltgadvviavmSGn 40 
                  fH GH+ +le+ak+++ ++++++ + G+
   CCE29360.1 157 FHLGHMRQLEQAKKTFPNTILVVGVTGD 184
                  9*******************99988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3202.64
//
Query:       CCE29361.1  [L=1109]
Description: related to phosphatidylserine decarboxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-55  186.9   0.0    5.1e-55  186.1   0.0    1.3  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase
    6.5e-37  126.0   0.0    7.1e-18   64.8   0.0    2.5  2  C2              C2 domain
     0.0014   18.0   0.0     0.0047   16.4   0.0    2.0  1  EF-hand_1       EF hand
  ------ inclusion threshold ------
      0.023   14.2   0.0      0.058   12.9   0.0    1.7  1  EF-hand_5       EF hand
      0.069   13.6   1.5       0.14   12.7   0.2    2.2  2  EF-hand_7       EF-hand domain pair
       0.14   12.2   0.0       0.14   12.2   0.0    2.9  4  EF-hand_6       EF-hand domain


Domain annotation for each model (and alignments):
>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.1   0.0   1.7e-58   5.1e-55       1     189 [.     828    1023 ..     828    1039 .. 0.92

  Alignments for each domain:
  == domain 1  score: 186.1 bits;  conditional E-value: 1.7e-58
  PS_Dcarbxylase    1 lneffvrklkdgaRpi..dddpgaivsPaDgrilqigeieegsviqvKgityslrdLlgeasessadsfkngyfvviyLspgdyHryhaPvsg 91  
                      +neff+r lk++aRp   +d+pg ivsPaD+r + + ++   + ++vKg ++s++ Llg+a +++a +++ng + +++L+p+dyHr+h+Pv+g
      CCE29361.1  828 FNEFFYRALKPDARPCsgPDQPGIIVSPADCRTVVFNHMAPARQVWVKGREFSIERLLGDAYPDDAARYENGALGIFRLAPQDYHRFHIPVDG 920 
                      8***************98899999********************************************************************* PP

  PS_Dcarbxylase   92 kveerrhipGellsvnpsalkelrglftlneRvvlview..kGkvavvpvGatnvgsivlnvlkgdelkkGeelGyFqf.GStvvlvfeag.. 179 
                      ++ + ++i+Ge+++vnp+a++++ +++ +n Rvv+ i++  +G+v+v+ vGa++vgs v++ ++g+++++ eelGyF+f GStv l+fe+g  
      CCE29361.1  921 VMGKPKTIAGEYYTVNPMAIRSTLDVYGENVRVVVPIDSvvHGRVMVICVGAMMVGSTVITREEGERVRRAEELGYFKFgGSTVLLLFEPGkm 1013
                      **************************************7789***********************************************9976 PP

  PS_Dcarbxylase  180 kfieslvekg 189 
                       f+++lv ++
      CCE29361.1 1014 VFDDDLVDNS 1023
                      5555555544 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0     2e-19   6.1e-16       2     103 .]      31     133 ..      30     133 .. 0.89
   2 !   64.8   0.0   2.4e-21   7.1e-18       3      96 ..     268     365 ..     266     370 .. 0.88

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 2e-19
                 EEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHHHH.. CS
          C2   2 klevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsgeeae.. 98 
                 +l++ v++A+nL++kd +g+sdpy ++++ g+++  T+ ++++lnP+Wn   +++++  ++  L v ++d+dr +++d +G++ + l+++ +g++ e  
  CCE29361.1  31 TLKLVVLKARNLAAKDRSGTSDPYLVITC-GDTRIVTHSVPKTLNPEWNVIEQVPINSVQNLLLDVICWDKDR-FGKDYMGEFDLALEEIFQGDRTEve 127
                 6899*************************.9999999999*********9999*****99*************.88888**********6665554422 PP

                 .EEEEH CS
          C2  99 .gwypl 103
                   w+pl
  CCE29361.1 128 pCWFPL 133
                 277765 PP

  == domain 2  score: 64.8 bits;  conditional E-value: 2.4e-21
                 EEEEEEEEESSSSSST....TSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC.HTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHH CS
          C2   3 levtvieAknLpnkdk....kgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae.leeakLeveVfdndrlskddfiGkveiplstllsgee 96 
                 + +++++ ++Lp+       +  +dp+v++sl gk++++Tr +k +lnPv+nek+ f+v+  +++ +  ++V d+d++s++dfi  +++p+++l ++++
  CCE29361.1 268 IFLEIVRITDLPPESNltrtSFDMDPFVVASL-GKKTYRTRRVKHNLNPVYNEKMLFHVQGhEQQYSFAFTVIDHDKYSGNDFIASCSLPVKDLIEKAP 365
                 668999*****888444544445*********.********99****************9999*****************************9766655 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.6e-06    0.0047       2      27 ..     509     534 ..     508     536 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++ + r +D+D +G+I++ E+ ++l 
  CCE29361.1 509 WRAMLRQYDTDESGQISRVELTTMLD 534
                 789*******************9986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.9e-05     0.058       3      24 ..     511     532 ..     510     533 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.9e-05
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                 +++++ D++ +G+Is+ EL t+
  CCE29361.1 511 AMLRQYDTDESGQISRVELTTM 532
                 689***************9987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   4.6e-05      0.14       7      65 ..     512     569 ..     503     571 .. 0.86
   2 ?   -2.7   0.1       2.9   8.6e+03      27      50 ..     783     808 ..     770     814 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.6e-05
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkef.....DtdkdGvisfdE 65 
                 + +++Dtd +g +++ el  +l         gs l++  ++ +f+ f     D d++  +++dE
  CCE29361.1 512 MLRQYDTDESGQISRVELTTMLD------TLGSTLRESTIDSFFHRFphkaaDNDDSWDLTMDE 569
                 5789*************998888......99***99999********99988777777777777 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.9
   EF-hand_7  27 llrkifqga..gegsklsdeelellf 50 
                 ll++++ +     +++ s++e+e+++
  CCE29361.1 783 LLKNLSIKQgkKFDDPASKDEIEKFI 808
                 55554442233445555568888876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.9   1.5e+04       6      13 ..     153     160 ..     153     162 .. 0.84
   2 ?   -3.2   0.4         4   1.2e+04       5      13 ..     335     343 ..     334     349 .. 0.87
   3 ?   12.2   0.0   4.6e-05      0.14       2      30 ..     509     536 ..     508     539 .. 0.87
   4 ?   -2.0   0.2       1.7     5e+03       8      27 ..     556     575 ..     555     579 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.9
   EF-hand_6   6 FklfDkdg 13 
                 F lfD+++
  CCE29361.1 153 FTLFDTTN 160
                 99***986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4
   EF-hand_6   5 aFklfDkdg 13 
                 aF  +D+d+
  CCE29361.1 335 AFTVIDHDK 343
                 899****96 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 4.6e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkal 30 
                 +r+  +++D+d +G+i++ El  +l   l
  CCE29361.1 509 WRAMLRQYDTDESGQISRVELTTMLD-TL 536
                 677889***************99998.45 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.7
   EF-hand_6   8 lfDkdgdGkidaeElrkalr 27 
                 + D+d++  ++++E + +l 
  CCE29361.1 556 AADNDDSWDLTMDEAVICLE 575
                 669999999***99888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 7436.45
//
Query:       CCE29362.1  [L=1243]
Description: uncharacterized protein CPUR_03055 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.52   11.1  10.4       0.17   12.6   5.2    3.0  3  U3_snoRNA_assoc  U3 snoRNA associated
        1.8    9.1   7.4        9.2    6.9   0.3    3.8  4  LRR_4            Leucine Rich repeats (2 copies)
        9.2    6.6  10.7         27    5.1   0.0    5.3  6  LRR_6            Leucine Rich repeat


Domain annotation for each model (and alignments):
>> U3_snoRNA_assoc  U3 snoRNA associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   5.2   2.8e-05      0.17      17      79 ..     347     412 ..     336     416 .. 0.76
   2 ?   -2.6   0.2       1.6   9.5e+03      38      38 ..    1092    1092 ..    1039    1132 .. 0.63
   3 ?   -3.7   0.0         3   1.8e+04      42      58 ..    1217    1233 ..    1212    1236 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.8e-05
  U3_snoRNA_assoc  17 eeaeeekskhineepkkarkkkkkekllelkekrpkdvkkGpvsvrVlkssnss.......klaPkaekk 79 
                      ++ +e+++    +++k+++kk+++e+++ ++++r+++   G+v + +  +s++s       + +Pk ++ 
       CCE29362.1 347 PSVTEKEP----NKKKEKKKKSEEERKARKEKRRRAAEESGSVPIEICYDSTDSssetrddAAPPKPSSP 412
                      33333333....66677788888888888899999999**********9999999999998889987765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.6
  U3_snoRNA_assoc   38 k 38  
                        
       CCE29362.1 1092 D 1092
                       1 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3
  U3_snoRNA_assoc   42 kllelkekrpkdvkkGp 58  
                       k+le +ek +  +++G 
       CCE29362.1 1217 KFLEAQEKARENINVGG 1233
                       89999999999999996 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.012        72       4      31 ..     546     579 ..     545     583 .. 0.76
   2 ?   -2.9   0.0       1.7     1e+04      28      40 ..     691     699 ..     689     703 .. 0.60
   3 ?    6.9   0.3    0.0015       9.2       6      33 ..     718     751 ..     717     759 .. 0.71
   4 ?   -1.3   0.1      0.55   3.3e+03      23      30 ..     773     780 ..     762     818 .. 0.56

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.012
                 -EEE--SS---.E-S-.......HHH-TT--EEE-. CS
       LRR_4   4 evLdLsnNqlt.dipl.......leklpnLkeLdLs 31 
                 e L L nN+l  d  +       l+k+ +Lk+Ld+s
  CCE29362.1 546 ERLVLKNNKLGpD--GwkhislfLYKCRSLKSLDIS 579
                 6789999998855..55666555669********94 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.7
                 EE-.-S-----GG CS
       LRR_4  28 LdLsgNnlitdld 40 
                 LdL gN    dl+
  CCE29362.1 691 LDLGGN----DLS 699
                 566666....554 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0015
                 EE--SS---.E-S-......HHH-TT--EEE-.-S CS
       LRR_4   6 LdLsnNqlt.dipl......leklpnLkeLdLsgN 33 
                 L+L+n+ lt + +l      l+kl+n + +dLs+N
  CCE29362.1 718 LSLANCGLTpS-SLgkmlpiLAKLTNFRFIDLSNN 751
                 77888887743.33344433669*********777 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.55
                 TT--EEE- CS
       LRR_4  23 pnLkeLdL 30 
                 ++Lk ++L
  CCE29362.1 773 TQLKRIHL 780
                 44444444 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.065   3.9e+02       6      23 ..     546     563 ..     545     564 .. 0.82
   2 ?    2.7   0.1     0.027   1.6e+02       1      11 [.     569     579 ..     569     580 .. 0.90
   3 ?    5.1   0.0    0.0046        27       5      22 ..     661     678 ..     658     680 .. 0.87
   4 ?   -1.4   0.3      0.59   3.5e+03       8      15 ..     691     698 ..     691     699 .. 0.90
   5 ?   -3.0   0.0       1.8   1.1e+04       7      17 ..     717     727 ..     712     730 .. 0.80
   6 ?   -2.4   0.1       1.2   7.2e+03       3      14 ..     741     752 ..     739     752 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.065
       LRR_6   6 teLdLsgNdIgDeGaeaL 23 
                 + L L+ N++g +G + +
  CCE29362.1 546 ERLVLKNNKLGPDGWKHI 563
                 6799*********96665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.027
       LRR_6   1 snthLteLdLs 11 
                 ++++L++Ld+s
  CCE29362.1 569 KCRSLKSLDIS 579
                 699*******9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0046
       LRR_6   5 LteLdLsgNdIgDeGaea 22 
                 ++ L L++N ++ eG++ 
  CCE29362.1 661 VRRLGLAHNSLDAEGIKH 678
                 689************986 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.59
       LRR_6   8 LdLsgNdI 15 
                 LdL gNd+
  CCE29362.1 691 LDLGGNDL 698
                 9*****98 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 1.8
       LRR_6   7 eLdLsgNdIgD 17 
                 +L+L+ ++++ 
  CCE29362.1 717 ALSLANCGLTP 727
                 69999**9987 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 1.2
       LRR_6   3 thLteLdLsgNd 14 
                 t+ +  dLs N+
  CCE29362.1 741 TNFRFIDLSNNQ 752
                 677889*****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1398  (0.0779742); expected 358.6 (0.02)
Passed bias filter:                      666  (0.0371465); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.11u 0.35s 00:00:01.46 Elapsed: 00:00:00.55
# Mc/sec: 6861.65
//
Query:       CCE29363.1  [L=113]
Description: uncharacterized protein CPUR_03056 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 853.10
//
Query:       CCE29364.1  [L=107]
Description: uncharacterized protein CPUR_03057 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 800.41
//
Query:       CCE29365.1  [L=110]
Description: uncharacterized protein CPUR_03058 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 868.86
//
Query:       CCE29366.1  [L=113]
Description: uncharacterized protein CPUR_03059 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.31   11.3   0.0    1.7  2  Pmp3      Proteolipid membrane potential modulator


Domain annotation for each model (and alignments):
>> Pmp3  Proteolipid membrane potential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.7e-05      0.31       4      27 ..       4      27 ..       2      31 .. 0.86
   2 ?   -1.7   0.0       0.2   3.6e+03      35      39 ..      85      89 ..      57      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.7e-05
        Pmp3  4 lillaiilPPlaValksGcsadll 27
                l llai+lP +a+ +++ cs++ +
  CCE29366.1  4 LSLLAILLPLAAADTHNWCSCQSW 27
                679*****9999999888***998 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.2
        Pmp3 35 lgylP 39
                lgy+P
  CCE29366.1 85 LGYFP 89
                78888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 935.96
//
Query:       CCE29367.1  [L=118]
Description: uncharacterized protein CPUR_03060 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 962.08
//
Query:       CCE29368.1  [L=302]
Description: probable 60S ribosomal protein L5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-78  262.8   0.2      2e-78  262.0   0.2    1.4  1  Ribosomal_L5e    Ribosomal large subunit proteins 60S L5, and
    1.4e-34  118.9   7.5    1.4e-34  118.9   7.5    2.0  2  Ribosomal_L18_c  Ribosomal L18 C-terminal region
  ------ inclusion threshold ------
      0.077   13.4   0.1      0.077   13.4   0.1    1.9  2  Ribosomal_L18p   Ribosomal L18 of archaea, bacteria, mitoch. 


Domain annotation for each model (and alignments):
>> Ribosomal_L5e  Ribosomal large subunit proteins 60S L5, and 50S L18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.0   0.2   3.4e-82     2e-78       1     163 []      14     179 ..      14     179 .. 0.97

  Alignments for each domain:
  == domain 1  score: 262.0 bits;  conditional E-value: 3.4e-82
  Ribosomal_L5e   1 krfqvkfrrrregktdYyarkrliiqdknkyntpkyRlvVrvtnkdiicqiayakiegdkvlaaayskelpkygvkvgltnyaaaYatglllarrl 96 
                    +rfq+k++rrr+gktdYyarkrli+q+knkyn+pkyRlvVr+tnkdii+qi++++i+gdkv+++ay++el+ yg+k+gltn+a+aYatgll+arr+
     CCE29368.1  14 SRFQTKYKRRRQGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNKDIIMQIVSSEITGDKVFVSAYAHELKAYGIKHGLTNWASAYATGLLIARRA 109
                    6*********************************************************************************************** PP

  Ribosomal_L5e  97 lkklgldkiyegqeevtgeeynveei...deekrafkaiLdvGLartttgakvfgalkgavdgglsiphs 163
                    l+klgldk + g+ee++ge + +e++   d+e+r+fk++LdvGLart+tga+vfga+kga+dgg+ +phs
     CCE29368.1 110 LSKLGLDKDFIGVEEADGEFTLTEAAetdDGERRPFKVFLDVGLARTSTGARVFGAMKGASDGGILVPHS 179
                    *******************9777765555999*************************************7 PP

>> Ribosomal_L18_c  Ribosomal L18 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.7      0.69   4.1e+03      66      86 ..      19      39 ..       3      51 .. 0.52
   2 !  118.9   7.5   2.3e-38   1.4e-34       1      95 []     195     294 ..     195     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.69
  Ribosomal_L18_c 66 kekkevkkeskkykkkkltle 86
                     k k++ + ++ +y +k+l  +
       CCE29368.1 19 KYKRRRQGKTDYYARKRLITQ 39
                     233333333444444444333 PP

  == domain 2  score: 118.9 bits;  conditional E-value: 2.3e-38
  Ribosomal_L18_c   1 AevlrkrIfgkhvaeYmeeLkeedeekykkqFskyikkgieaddleelykkahaaIredpvkk.....ekkekkevkkeskkykkkkltleqrk 89 
                      Ae+l k+Ifg+hvaeYme+L+++dee+y++qF+kyi++++ead leely+ ahaaIr+dp+kk      kk+k+e+k+ skky+++k ++++++
       CCE29368.1 195 AETLSKYIFGGHVAEYMETLADDDEERYQSQFQKYIDDDVEADGLEELYTAAHAAIRADPFKKadgeaPKKTKEEWKAISKKYRQTKSSKAEKQ 288
                      89***********************************************************999**9888************************ PP

  Ribosomal_L18_c  90 arvkqK 95 
                      arv++K
       CCE29368.1 289 ARVQEK 294
                      ****98 PP

>> Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.3e-05     0.077      16      84 ..      40     112 ..      19     117 .. 0.71
   2 ?   -1.9   0.4      0.68     4e+03       4      19 ..     281     296 ..     271     300 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
                     TT--TTSSS-EEEEEE-SS-EEEEEE-T..TT--EEEEECS-SCCCT..S-SSSCHHHHHHHHHHHHHHHCHH CS
  Ribosomal_L18p  16 kklsgtaerprlvvfrsnrhiyaQvidd..vkgktlasastlekelk..lkstknkeaakkvgeliAerakek 84 
                      k + +a + rlvv  +n+ i  Q++ +  + +k+ +sa + e +    ++   n ++a + g liA+ra+ k
      CCE29368.1  40 AKNKYNAPKYRLVVRFTNKDIIMQIVSSeiTGDKVFVSAYAHELKAYgiKHGLTNWASAYATGLLIARRALSK 112
                     3333456689****************8722455666666666655556556678889999*********9875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.68
                     CHHHCHHHHHHTTT-- CS
  Ribosomal_L18p   4 kearkrRhkRirkkls 19 
                     k++++ +++R+++k++
      CCE29368.1 281 KSSKAEKQARVQEKIK 296
                     5667777788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1477  (0.0823805); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2337.05
//
Query:       CCE29369.1  [L=321]
Description: uncharacterized protein CPUR_03062 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.032   14.3   0.0       0.06   13.4   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like
      0.035   14.2   0.0      0.073   13.2   0.0    1.5  1  HAD_2           Haloacid dehalogenase-like hydrolase
      0.042   13.8   2.8      0.045   13.7   2.8    1.1  1  SPX             SPX domain


Domain annotation for each model (and alignments):
>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     1e-05      0.06       3      59 ..     229     304 ..     227     316 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1e-05
                     STTSSHHHHHHHHHH....................---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHH CS
  Hydrolase_like   3 gKPepemydfalevl....................gsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedle 59 
                     +KPe  my  a+e l                    g+++e++l+  D     +++A+++G +++ V  G t+++ +e
      CCE29369.1 229 RKPEDRMYTLAVEMLdafakdhattergiqngwiaGVKSEDILFLDDI-GENLKAAKRHGFRTLKVQLGRTEEAVAE 304
                     8**************999999999999999999998889*****9999.*********************9987654 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.2e-05     0.073     118     177 ..     213     292 ..     205     293 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
       HAD_2 118 iesyFdvivtsedvekkKPdpeviekalekl....................klkkeeviyvGDsptDieaakkagikvia 177
                 + + Fdv ++s +v+ +KP+ +++  a+e l                    ++k+e++++  D    ++aak+ g +++ 
  CCE29369.1 213 LRRRFDVFISSAHVGVRKPEDRMYTLAVEMLdafakdhattergiqngwiaGVKSEDILFLDDIGENLKAAKRHGFRTLK 292
                 6678***************************999***************999*********9999*******99999875 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.8   7.6e-06     0.045      92     136 ..      95     162 ..      45     258 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.6e-06
         SPX  92 e..slprrsplsrssrssssygglvssppsansssssddssesnpa.....................d 136
                    s+p++sp+s+  +ssss +++ +s+ps+ +ssss++ss+s+++                     +
  CCE29369.1  95 PaaSSPSSSPSSSTLPSSSSSSSSLPSSPSSFPSSSSSSSSPSPQStipplprintqqlftnmmtlaQ 162
                 02244444444444444444444444444444444444444444222333444444444444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 2536.64
//
Query:       CCE29370.1  [L=717]
Description: uncharacterized protein CPUR_03063 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-12   47.5   0.7    2.2e-12   46.5   0.2    1.9  2  zf-MIZ    MIZ/SP-RING zinc finger
  ------ inclusion threshold ------
      0.067   13.0   1.4        0.2   11.5   1.4    1.9  1  zf-Nse    Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         1   9.2e+03       2      13 ..      90     101 ..      90     103 .. 0.82
   2 !   46.5   0.2   2.5e-16   2.2e-12       2      48 ..     580     637 ..     579     639 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1
                 ESB-TTTSSB-S CS
      zf-MIZ   2 slkCplslsrik 13 
                 +l+Cp    ri 
  CCE29370.1  90 TLECPSEILRIA 101
                 589*99999986 PP

  == domain 2  score: 46.5 bits;  conditional E-value: 2.5e-16
                 ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS--...........-B-TTT- CS
      zf-MIZ   2 slkCplslsrikiPvrgekCkHlqCfdlesylelnertet...........WnCPvCs 48 
                 s++ p+s s  +iPvrg+ CkH+ Cfdl+++l++ + + +           W+CP+C+
  CCE29370.1 580 SVTDPFSASMFQIPVRGSSCKHIECFDLQTWLQTRSSKGSlsrtepsladgWKCPICN 637
                 666799****************************99998889999************8 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.4   2.2e-05       0.2       1      33 [.     568     602 ..     568     637 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.2e-05
                 SXXXXXS..SBXXSB-TTTSSB-SSEEEESSS--E CS
      zf-Nse   1 delaiee..erislkCPltlqpfeePvtskkCpHv 33 
                 d++ ++     is+++P + + f+ Pv+   C+H+
  CCE29370.1 568 DDVIVQDdcLCISVTDPFSASMFQIPVRGSSCKHI 602
                 666776644469**********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 5233.75
//
Query:       CCE29371.1  [L=225]
Description: uncharacterized protein CPUR_03064 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.13   12.1   0.4       0.27   11.1   0.4    1.4  1  Deltameth_res  Deltamethrin resistance


Domain annotation for each model (and alignments):
>> Deltameth_res  Deltamethrin resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   1.5e-05      0.27      17      49 ..     154     188 ..     151     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.5e-05
  Deltameth_res  17 kqrkYNavLaaGivi..ligTialakesglinlny 49 
                     ++++N+ L++G ++   +g+i+++++s +  +n+
     CCE29371.1 154 SNTTFNTSLITGSIAdsIAGSITTFNTSSITTFNT 188
                    699*********9965599************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1091  (0.0608511); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1553.96
//
Query:       CCE29372.1  [L=939]
Description: probable C1-tetrahydrofolate synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-253  842.6   0.0   1.4e-253  842.1   0.0    1.2  1  FTHFS            Formate--tetrahydrofolate ligase
    1.6e-65  219.3   1.8    1.6e-65  219.3   1.8    2.2  2  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
    1.3e-35  122.2   0.3    2.6e-35  121.2   0.3    1.6  1  THF_DHG_CYH      Tetrahydrofolate dehydrogenase/cyclohydrolas
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.024   14.3   0.0    1.3  1  Helicase_C_4     C-terminal domain on Strawberry notch homolo
      0.021   13.8   1.1      0.025   13.5   0.1    1.5  2  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
      0.096   13.1   0.0       0.47   10.9   0.1    2.2  2  Glyco_trans_1_4  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> FTHFS  Formate--tetrahydrofolate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  842.1   0.0  4.8e-257  1.4e-253       2     554 .]     313     939 .]     312     939 .] 0.99

  Alignments for each domain:
  == domain 1  score: 842.1 bits;  conditional E-value: 4.8e-257
                 -HHHHHHCS----HHHHHHCTT--CCCEEEBSTTEEEE-CHHCCTCTTTS-.-EEEEEEESS--TT--SHHHHHHHHHHHHH.HTT--EEEEE----SH CS
       FTHFS   2 sdieiaqeaklkpieeiaeklglkeeelelyGkykakvslkvlerllkekkkgklilvtaitPtplGeGKttttigLaqaln.klgkkavaalRepslG 99 
                 sdi i++++++k+i++ia+++g++ +ele+yG ykakv+l++l+rl +++++g++++vt+itPtplGeGK+ttt+gLaqal+ +lg+ ++a++R+ps+G
  CCE29372.1 313 SDIAISRDQTPKQITRIAAEVGIAPHELEPYGAYKAKVDLDLLKRL-EHRRNGRYVVVTGITPTPLGEGKSTTTMGLAQALGaHLGRLTFANVRQPSQG 410
                 8******************************************876.99********************************99**************** PP

                 HHHCST--SCEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTTT............................................. CS
       FTHFS 100 PvfgiKGgAaGGGysqvvPmedinLhltGDihaitaannllaalidnrifhene............................................. 153
                 P+fgiKGgAaGGGysqv+Pm+++nLhltGDihaitaannllaa+i++rifhe++                                             
  CCE29372.1 411 PTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIETRIFHEDTqkdgplyrrlvpakngerkfapvmfrrlkklgidktnpddltade 509
                 *************************************************************************************************** PP

                 ......T-EECCCE---EEESS--GGGSSEEES-SSTTS---EEE-EEEGGGSHHHHHHHH-SSHHHHHHHHHC-EEEEETTS-EEECCCCT-HHHHHH CS
       FTHFS 154 ......ldidpkkitwkrvlDvndraLRkivvglggkekgvpretgfditvasEimailaLakdledlkerlgrivvaytkdgepvtaedlkvagalav 246
                       ldidp++itw+rvlDvndr+LR i+vg++++ekg++retgfdi+vasE+mailaL+ +l+dl+erlgr+vva++++g+pvt++d+++ gal++
  CCE29372.1 510 irrfarLDIDPETITWRRVLDVNDRHLRGITVGTAPTEKGHSRETGFDISVASECMAILALSASLADLRERLGRMVVATSRSGDPVTCDDIGAGGALTA 608
                 *************************************************************************************************** PP

                 HTTTTTS-EEEEETT--EEEE-----SSSS--B--HHHHHHHHHH............-SEEEEEBSSSTTTHHHHHHHTHHHHHT---SEEEEEEEHHH CS
       FTHFS 247 llkdaikPnlvqtlegtpalvHggPFAniahGcnsviatklalkl............adyvvtEaGFgadlgaekfldikcrasglkpdavvlvatvra 333
                 l+kdaikPnl+qtlegtp++vH+gPFAni++G++s+ia+klalkl            a++vvtEaGF++++g e+f++ikcr+sgl+pd+vv+vatvra
  CCE29372.1 609 LMKDAIKPNLMQTLEGTPVFVHAGPFANISIGQSSIIADKLALKLtgaepsenydeaAGFVVTEAGFDFTMGGERFFNIKCRTSGLSPDVVVVVATVRA 707
                 *************************************************************************************************** PP

                 HHHHTT........--CCCTTS--HHHHHHHHHHHHHHHHHHCTTT--EEEEEE--TT--HHHHHHHHHHH.HCTTSEEEEE-HHHHGGGGGHHHHHHH CS
       FTHFS 334 Lklhgg........vekeelkeenlealekGlanlekhienvkkfgvpvvvainkfktDteaelelvkela.eakavevalsevwakGgeGalelaeav 423
                 Lk+hgg        +    +keen+++l++G+ nl+khi+n+k+fg+pvvvainkf+tDt+ae+++v+e+a +a+a +++l+++wa+Gg+Ga++la+ v
  CCE29372.1 708 LKVHGGgppispgaPLDPVYKEENIDILRAGCVNLKKHISNAKSFGIPVVVAINKFATDTDAEIAVVREEAlSAGAEDAILADHWAQGGKGAVDLARGV 806
                 ******9998865444499***************************************************9999************************* PP

                 HHHCC-.-.---SS-TTS-HHHHHHHHHHHTT--SEEEE-HHHHHHHHHHHHTTCTTS-EEEE--SSSSSSSTT--SS--S-EEEEEEEEEETTTTEEE CS
       FTHFS 424 vealee.kefkflYdlelsieekietiakeiYgadgvelseeakkklkklekqgldklpvciaKtqySlsddpklkgapegftltvrevrlsaGagfiv 521
                 v+a  + ke++++Y le +++e+ie+i +++Yga++ve+se a++k+++++kqg+++lp+ciaKtqySls+dp+lkgap+gft+++r+vr++aGag+++
  CCE29372.1 807 VAASGKpKEMTLTYGLEGTVQERIEAIGQKMYGAAKVEFSELAQRKVDTYTKQGYGNLPICIAKTQYSLSHDPELKGAPTGFTVPIRDVRMAAGAGYLY 905
                 ****97799****************************************************************************************** PP

                 EESST--SS----SS-GGGC-EE-TT.SEEES-- CS
       FTHFS 522 alageimtmPGlpkkpaaekidvdee.gkieGlf 554
                 ala++i+t+PGlp+ p + ++dvd+e g+i Glf
  CCE29372.1 906 ALAADIQTIPGLPTAPGYLNVDVDTEtGEIDGLF 939
                 *************************99*****98 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.3   1.8   5.4e-69   1.6e-65       3     156 ..     127     288 ..     125     291 .. 0.98
   2 ?   -1.0   0.1      0.31   9.3e+02     129     153 ..     368     392 ..     362     396 .. 0.85

  Alignments for each domain:
  == domain 1  score: 219.3 bits;  conditional E-value: 5.4e-69
                    HHHHHHHTT..--SS--HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B-GG CS
  THF_DHG_CYH_C   3 lnlgrlvkg..eeallpctpkgvvellketgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpelikae 96 
                     n+g+l+k+   + ++pctpkgv+ +lke+gi ++gk++vv+Grsnivg p++ lL +++atV +chskt+++++++++adiv++a+G+++++kae
     CCE29372.1 127 NNIGELAKRggAPLFTPCTPKGVMFMLKEAGIPIAGKTAVVLGRSNIVGGPVSYLLRHADATVIICHSKTQNVEQYLKNADIVIAAIGQAQFVKAE 222
                    69******98899*********************************************************************************** PP

                    GS-TT-EEEE---EEC......-TTEEE-SB-HHHHCTTSSEE--TTTSCHHHHHHHHHHHHHHHH CS
  THF_DHG_CYH_C  97 mvkegavviDvGinrv......ekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaa 156
                    ++kegavviDvG+n +      +++++vGDvdfe +++vas+itPvpgGVGpmTvamll+n++ea+
     CCE29372.1 223 WLKEGAVVIDVGTNFIpdatkkSGQRMVGDVDFEGASKVASVITPVPGGVGPMTVAMLLQNVVEAT 288
                    ********************998999*************************************986 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.31
                    TSSEE--TTTSCHHHHHHHHHHHHH CS
  THF_DHG_CYH_C 129 vasaitPvpgGVGpmTvamllkntl 153
                    v+  itP p G G+ T++m l++ l
     CCE29372.1 368 VVTGITPTPLGEGKSTTTMGLAQAL 392
                    56779*************9888766 PP

>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.3   8.8e-39   2.6e-35       1     116 []       5     122 ..       5     122 .. 0.97

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 8.8e-39
                  E--HHHHHHHHHHHHHHHHHHHHH..HT---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS- CS
  THF_DHG_CYH   1 lldGkalakeireelkeeveklke..kgvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPl 96 
                  +ldG+a+ak+ir+ + +++++ ++  ++ kp+L +i+vgd+ +s++Yvr+k ka+ e+G+ +eli++p ++se ell++i++ln+d++v+GilvqlPl
   CCE29372.1   5 ILDGTAIAKAIRATIGASIAQKQQlnPRYKPSLKIIQVGDRSDSSTYVRMKLKAAVEAGVACELIQCPVEISEVELLDQIRRLNHDPTVNGILVQLPL 102
                  79*****************9988864489********************************************************************* PP

                  STTS-HHHHHCCS-GGGBTT CS
  THF_DHG_CYH  97 pkhidekaileaispeKDVD 116
                  p +i+e +i++a++ eKDVD
   CCE29372.1 103 PPNISEYNITSAVADEKDVD 122
                  *******************9 PP

>> Helicase_C_4  C-terminal domain on Strawberry notch homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     8e-06     0.024     112     167 ..     462     519 ..     459     557 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8e-06
  Helicase_C_4 112 RsnqasaPeyrllvtelaGerRfasavArrLesLGA..ltrgdrraaegrdlsefnld 167
                      q  +P+yr lv   +Ger+fa ++ rrL++LG      +d  a e r +++ ++d
    CCE29372.1 462 EDTQKDGPLYRRLVPAKNGERKFAPVMFRRLKKLGIdkTNPDDLTADEIRRFARLDID 519
                   567999*****************************62122334444566666666665 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   8.5e-06     0.025     177     225 ..     185     236 ..     177     244 .. 0.75
   2 ?   -3.7   0.1       1.4   4.2e+03     168     212 ..     743     792 ..     739     797 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.5e-06
                      .CTT-EEECSCHHHHT....TSSEEEE----SS-SB-GGGS-TT-EEEE-S-- CS
  OCD_Mu_crystall 177 fefevsackseeeave....gadivvtvTaakapilkaewvkpGahinavgad 225
                      ++  v  c+s+ + ve    +adiv+++   +a  +kaew+k+Ga +  vg +
       CCE29372.1 185 ADATVIICHSKTQNVEqylkNADIVIAAIG-QAQFVKAEWLKEGAVVIDVGTN 236
                      577888888877776522227*****9865.56799***********999975 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.4
                      HHHHHHCCS.CTT-EEECSCHHHHTTSSEEEE----SS.....-SB-GGG CS
  OCD_Mu_crystall 168 ekfaenlqefefevsackseeeavegadivvtvTaaka.....pilkaew 212
                      +k ++n++ f++ v+++ ++     +a+i v    a +      il + w
       CCE29372.1 743 KKHISNAKSFGIPVVVAINKFATDTDAEIAVVREEALSagaedAILADHW 792
                      56667777767766666665555555555443322222344445555555 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00016      0.47      15      98 ..     147     231 ..     140     264 .. 0.71
   2 ?   -3.7   0.0       5.2   1.5e+04      52      87 ..     517     560 ..     504     567 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
                      GTHHHHHHHH.HHHH.H.H...EEEEEES---..HHHHHHHTT-T.T.EEEE---THHHHHHHH-SEEEE-----SHHHHHHHHTT-EEE CS
  Glyco_trans_1_4  15 kgvdllleav.pllrkk.d...vrlvivGdgprpeeleelaagleer.veftGfvedlaellaaadvfvaPsegfglkllEamaaglpvV 98 
                      kgv ++l+++   ++ k      r  ivG gp +  l + a+   ++ ++ + + ++++++l++ad+++a + + + +  E +  g  v+
       CCE29372.1 147 KGVMFMLKEAgIPIAGKtAvvlGRSNIVG-GPVS-YLLRHAD---ATvIICHSKTQNVEQYLKNADIVIAAIGQAQFVKAEWLKEGAVVI 231
                      89999999988777756335434788999.8754.5654554...552555556699*************99666777666666666665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.2
                      T-T.TEEEE---.THHHHHHHH-SEEEE--......-.--SHHH CS
  Glyco_trans_1_4  52 gleerveftGfv.edlaellaaadvfvaPs......e.gfglkl 87 
                      +++++ +   +v +  +++l+  +v  aP+      e gf +++
       CCE29372.1 517 DIDPETITWRRVlDVNDRHLRGITVGTAPTekghsrEtGFDISV 560
                      55555444444534477888889999999865544325666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (939 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 6336.70
//
Query:       CCE29373.1  [L=933]
Description: related to budding protein BOI2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-14   52.4   0.0    7.1e-14   51.7   0.0    1.4  1  SAM_2     SAM domain (Sterile alpha motif)
    2.2e-11   43.4   0.0    4.6e-11   42.4   0.0    1.6  1  SH3_9     Variant SH3 domain
    2.2e-11   43.2   0.0    4.6e-11   42.1   0.0    1.6  1  SH3_1     SH3 domain
    3.5e-10   40.3   0.0    8.3e-10   39.1   0.0    1.6  1  PH        PH domain
    0.00049   20.5   0.1     0.0013   19.1   0.1    1.7  1  PH_11     Pleckstrin homology domain
     0.0032   17.1   0.0     0.0069   16.0   0.0    1.5  1  SH3_2     Variant SH3 domain
  ------ inclusion threshold ------
      0.011   16.2   0.0       0.02   15.3   0.0    1.4  1  SAM_1     SAM domain (Sterile alpha motif)
      0.056   13.7   0.0       0.13   12.5   0.0    1.6  1  PH_8      Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   3.2e-17   7.1e-14       1      66 []     237     304 ..     237     304 .. 0.98

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 3.2e-17
                 GGGHHHHHHHHHHHHTTT.GGGHHHHHHTTCSHHHHHTTSCHHHH..HHTTHHHHHHHHHHHHHHHHHH CS
       SAM_2   1 veswsledvaeWLrsigl.kqytdnFrdagitgaelllrlteedL..krlGitsvghrkkilkkiqelk 66 
                 vesw++++vae+L + g  kq+++ Frd++i+g e+ll+++++ L  k+++  svg+r+k+++ki++l+
  CCE29373.1 237 VESWTADQVAEYLFTAGVeKQHCEVFRDQEISG-EVLLGMDQSSLfiKAFDLGSVGRRLKTWHKIKALQ 304
                 79*******************************.************88******************996 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.1e-14   4.6e-11       1      48 [.      21      73 ..      21      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.1e-14
       SH3_9  1 AlypyepreddeLsLqrGDvitvieese...dgWlegs.l.tGrtGlvPanyv 48
                +++++++r  deL L++GD++ + e+++   dgW++g+ l + +tGl+P  y+
  CCE29373.1 21 VIHDFQARGSDELTLCKGDRVELVERDDefgDGWFLGRhLlKNNTGLFPHVYT 73
                79*********************96644488******9845**********97 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   2.1e-14   4.6e-11       1      48 []      20      70 ..      20      70 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 2.1e-14
                EESSSBEXSSTTBXEBSTTEEEEEEEECSS...SEEEEEETTSTEEEEEEG CS
       SH3_1  1 iAlYDYeaeesdELsfkkGDviivleksed...gWwkgrlkgtgkeGliPs 48
                i+++D++a+ sdEL+++kGD ++++e++++   gW+ gr   ++ +Gl+P+
  CCE29373.1 20 IVIHDFQARGSDELTLCKGDRVELVERDDEfgdGWFLGRHLLKNNTGLFPH 70
                689***********************************************7 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   3.7e-13   8.3e-10       3     103 ..     746     876 ..     744     877 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 3.7e-13
                 EEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC.......................TTSSSSTSEEEE...... CS
          PH   3 keGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevva.......................tedpkrkfcfel...... 72 
                 + Gw++kk+s+  ++wk r+fvLk+ +l+yy ++   +d + kg i++s ++v   ++                       t++ +++ +f +      
  CCE29373.1 746 YYGWMKKKSSNLMTTWKPRFFVLKGRRLAYYYSE---EDDQEKGLIDISFHRVLPAGNerltglhatltgaagasmgheanTAERGNESVFIFkltppr 841
                 67*****************************999...9****************9999********************988556666666666547777 PP

                 .......EESTSSSTEEEEEEESSHHHHHHHHHHHHHH CS
          PH  73 .......riverngsrtyllqasseeerkeWikaiqsa 103
                        +    +++ +++++ +s e  + W++a+ +a
  CCE29373.1 842 aglsravN---FTKPMVHYFALPSVETGRLWMAALMKA 876
                 76664322...23359******************9876 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   5.9e-07    0.0013       3      36 ..     748     783 ..     746     811 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.9e-07
       PH_11   3 Gylkkkgsk...aWkrrwfavlkdgvLeyYksekkkv 36 
                 G++kkk+s    +Wk r+f vlk ++L yY se++  
  CCE29373.1 748 GWMKKKSSNlmtTWKPRFF-VLKGRRLAYYYSEEDDQ 783
                 8999999999*********.***********999876 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.1e-06    0.0069       4      51 ..      21      70 ..      19      75 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.1e-06
                ESS-B-SCGCCB--B-TTEEEEEE..EEEECT...TEEEEEE..CCCEEEEEG CS
       SH3_2  4 aiedyvgedkseLsfkkGdvikvlslgskdsd...gwwegev..gGrvGlfPs 51
                +i d+ +   +eL+++kGd + ++   ++d++   gw +g+   ++  GlfP+
  CCE29373.1 21 VIHDFQARGSDELTLCKGDRVELV---ERDDEfgdGWFLGRHllKNNTGLFPH 70
                78999*******************...888879989999988899*******7 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0     9e-06      0.02       2      41 ..     239     279 ..     238     295 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9e-06
                 CTTHSSHHHHHHHTTS.GGGHHHHHTTTSSHHHHTTSCHHH CS
       SAM_1   2 kwsvedVgeWLesigl.gqYadlFrageidgdaLllltedd 41 
                 +w+ ++V+e L   g  +q+++ Fr++ei+g+ Ll ++++ 
  CCE29373.1 239 SWTADQVAEYLFTAGVeKQHCEVFRDQEISGEVLLGMDQSS 279
                 7***************99*****************999875 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.8e-05      0.13       1      48 [.     748     793 ..     748     805 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.8e-05
        PH_8   1 gillkkrrkklqgyakRfFvLdlksstlsYyrddnssalrgkiplsla 48 
                 g++ kk    +  ++ RfFvL  k   l Yy+++++ + +g i +s  
  CCE29373.1 748 GWMKKKSSNLMTTWKPRFFVL--KGRRLAYYYSEEDDQEKGLIDISFH 793
                 899******************..999******9999998898888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.39
# Mc/sec: 7251.10
//
Query:       CCE29374.1  [L=1276]
Description: uncharacterized protein CPUR_03067 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-13   50.8   0.0    2.9e-13   49.9   0.0    1.4  1  Forkhead  Forkhead domain
    0.00064   20.0   0.0     0.0014   18.9   0.0    1.6  1  FHA       FHA domain


Domain annotation for each model (and alignments):
>> Forkhead  Forkhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   3.2e-17   2.9e-13       1      66 [.     778     843 ..     778     855 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 3.2e-17
                 ------HHHHHHHHHHT-TTT-B-HHHHHHHHHCC-HHHHC.C.-CCHHHHHHHHHHHHC--EEETT CS
    Forkhead   1 skPpysYaaLIaqAiksspekkltLseIyefieenfpyyrt.aakkgWqnSirhnLslnkcFekvpr 66 
                 +kP+ +Y  LI + + ++pe  ltL++Iy+ i +++p++   + +kgW++S+rhnL  n++F+k + 
  CCE29374.1 778 QKPNKNYGVLIHETLTAAPE-GLTLKQIYKRICQKYPWFYFhTGTKGWESSVRHNLIGNEAFRKDET 843
                 69*************99976.6***************87654469******************9774 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.6e-07    0.0014      10      68 ..     461     517 ..     452     518 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.6e-07
                 SEETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEE CS
         FHA  10 divlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdviel 68 
                 +i  + + iSr H+ i +++++g ++ + l+ knG f  ++  ++ ++v Lk gd++++
  CCE29374.1 461 NIASKTKAISREHLKIAYNQDEGVFEAIPLH-KNGFFCEDVHYKS-DKVVLKCGDRLQI 517
                 66666789**********************7.*********9998.9*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.27s 00:00:01.17 Elapsed: 00:00:00.41
# Mc/sec: 9304.56
//
Query:       CCE29375.1  [L=233]
Description: uncharacterized protein CPUR_03068 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.088   13.1   1.8       0.13   12.5   1.8    1.3  1  DUF4293   Domain of unknown function (DUF4293)
       0.16   11.8   0.0       0.26   11.1   0.0    1.3  1  RMI1_C    Recq-mediated genome instability protein 1, C-termi


Domain annotation for each model (and alignments):
>> DUF4293  Domain of unknown function (DUF4293)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.8   1.4e-05      0.13       7     101 ..      58     148 ..      55     191 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
     DUF4293   7 lyLllaailmaaflflplasivtedellsfyalgvstaeaetsvnvsvwvlvilllliailaliaIflyknRklQlrlclinllllvllyvllal 101
                 ++Llla  l++  +f+ + + ++++      ++ + +a++ + ++v++++l++++++++ l++  +     R+ Q  + ++n l++ +++  la 
  CCE29375.1  58 VWLLLAGFLVFPGTFTTIQRSIESK----HAQQPTDEATDLILKSVKNIPLLVIAAVACGLSITGMAVLAVRHAQNYVWMLNKLIMPGVANCLAG 148
                 4555555555444444444433333....3333333556667889*****************************************888776665 PP

>> RMI1_C  Recq-mediated genome instability protein 1, C-terminal OB-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.9e-05      0.26      16      52 ..     135     171 ..     125     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.9e-05
      RMI1_C  16 sksknqtvvikikafivtllgkleaskgkwqlkakis 52 
                 +k + + v  ++ ++i+tl+g  ++++g w+++ak++
  CCE29375.1 135 NKLIMPGVANCLAGLISTLVGVYSQQHGVWSVTAKVT 171
                 5556677778999*********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1805.84
//
Query:       CCE29376.1  [L=440]
Description: uncharacterized protein CPUR_03069 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-59  198.2  37.0      1e-32  112.8  11.8    2.9  3  MFS_MOT1  Molybdate transporter of MFS superfamily


Domain annotation for each model (and alignments):
>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9  12.1   2.1e-31   3.8e-27       1     111 []      25     141 ..      25     141 .. 0.97
   2 ?   -0.8   0.2      0.11     2e+03      76      92 ..     185     201 ..     165     210 .. 0.70
   3 !  112.8  11.8   5.8e-37     1e-32       3     111 .]     231     349 ..     229     349 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 2.1e-31
    MFS_MOT1   1 aelsgalgdlglTllnlvialaalaslsltalllsvGlmnlltglfggvPmc.....hgAgglaaqyrf..gartgaagillGlvllllgltgllerll 92 
                 aelsg+lgdlg Tll+l+ialaa+ s++l+++l+++G++n++tg+++g+P++     ++A+++++  +    a ++aag ++G+++ll+++tgll++ +
  CCE29376.1  25 AELSGSLGDLG-TLLPLMIALAAQGSIDLASTLVFSGFFNIVTGIVFGIPLPvqpmkAIASAAISGRQDasMAVVVAAGQWVGAAVLLMSVTGLLRWAT 122
                 589********.*********************************************9*****999555889*************************** PP

    MFS_MOT1  93 rliPksvlgglllgaGleL 111
                 +++P +v++g++lgaGl+L
  CCE29376.1 123 SVVPIPVVKGIQLGAGLSL 141
                 *****************98 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.11
    MFS_MOT1  76 Glvllllgltgllerll 92 
                 +lv+++l+l+++++++l
  CCE29376.1 185 ALVFFVLALIFAFVAVL 201
                 45666666666665554 PP

  == domain 3  score: 112.8 bits;  conditional E-value: 5.8e-37
    MFS_MOT1   3 lsgalgdlglTllnlvialaala........slsltalllsvGlmnlltglfggvPmchgAgglaaqyrfgartgaagillGlvllllgltg..llerl 91 
                 l +a+g+l+lT+ln+v+a+ ala        + s+ta+++sv++mnl + +fg++P+chgAgglaaqyrfgar+ga++i+lGlv+ll gl++  +l  l
  CCE29376.1 231 LWMAIGQLPLTTLNSVLAVNALAadllpgvhTPSVTAIGMSVAVMNLSGTWFGAMPLCHGAGGLAAQYRFGARSGASVIVLGLVKLLTGLVFgeTLLGL 329
                 5689**************************9667***************************************************************** PP

    MFS_MOT1  92 lrliPksvlgglllgaGleL 111
                 lr +Pks+lg+++l+aGleL
  CCE29376.1 330 LRSYPKSLLGIMVLAAGLEL 349
                 ******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3385.04
//
Query:       CCE29377.1  [L=478]
Description: uncharacterized protein CPUR_03070 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-11   42.9   0.1      0.007   16.7   0.0    4.2  4  Ank_5     Ankyrin repeats (many copies)
    3.3e-09   37.2   0.0    9.5e-05   22.9   0.0    4.3  3  Ank_2     Ankyrin repeats (3 copies)
    2.4e-08   33.6   0.0        5.6    7.9   0.0    6.4  6  Ank_3     Ankyrin repeat
    1.2e-07   32.2   0.2       0.16   12.6   0.0    4.6  5  Ank_4     Ankyrin repeats (many copies)
    0.00014   22.1   2.9         11    6.6   0.0    5.1  6  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0     0.001       3.8      13      44 ..      52      81 ..      47      84 .. 0.86
   2 !   12.7   0.0   3.4e-05      0.12      16      43 ..     116     143 ..     112     149 .. 0.91
   3 ?   -1.5   0.0         1   3.6e+03      17      25 ..     156     164 ..     145     166 .. 0.79
   4 !   16.7   0.0   1.9e-06     0.007       8      53 ..     187     230 ..     182     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.001
       Ank_5 13 dgggntpLhvAakygaadvvrlLlargadlnl 44
                d+   t+Lh+++  g++++ ++Ll++ga+l++
  CCE29377.1 52 DES--TALHFSVIMGNLRLTEKLLDMGASLKT 81
                444..*******************99999876 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.4e-05
       Ank_5  16 gntpLhvAakygaadvvrlLlargadln 43 
                  ++pL +A  +g++d+++lL++rgad+ 
  CCE29377.1 116 DMLPLSLAFLQGNSDMCKLLVDRGADRQ 143
                 579**********************986 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1
       Ank_5  17 ntpLhvAak 25 
                 +++Lh+Aa 
  CCE29377.1 156 MSILHFAAA 164
                 689****95 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 1.9e-06
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 ++ r  ++  tpLhvA  +g+ + +++ ++ ga+  +t+++ +t+l
  CCE29377.1 187 RCPRGSRC--TPLHVALINGCTQGMQIAVESGANKEATNGESRTPL 230
                 56666677..***********************************9 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.6e-06     0.016       1      78 [.      57     141 ..      39     146 .. 0.61
   2 !   22.9   0.0   2.6e-08   9.5e-05       2      82 ..     121     222 ..     120     223 .. 0.77
   3 ?    0.0   0.0      0.37   1.3e+03      40      79 ..     334     386 ..     290     389 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.6e-06
       Ank_2   1 LhlAakngnlelvklLl.egadpnkngktaLhyAakngnlei...vklLleh.....adndgrtpLhyAarsghleivklLlekgad 78 
                 Lh+ +  gnl l + Ll  ga ++ ++ t++ y a +  +e+   + ++ +      +    + pL +A  +g+++++klL+++gad
  CCE29377.1  57 LHFSVIMGNLRLTEKLLdMGASLK-THCTPVLYEALGS-EEFldrIDYFQDTfeepgFSVGDMLPLSLAFLQGNSDMCKLLVDRGAD 141
                 455555555555555554333333.3445544444422.232222455554333433335578*******************99*98 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 2.6e-08
       Ank_2   2 hlAakngnlelvklLl.egadpn.....k....ngktaLhyAakngnlei..vklLleh....ad.....ndgrtpLhyAarsghleivklLlekgadi 79 
                  lA ++gn++++klL+  gad       +      +++Lh+Aa    ++    + L +     ++      +  tpLh+A  +g ++ +++ +e+ga++
  CCE29377.1 121 SLAFLQGNSDMCKLLVdRGADRQvmtvySrggsRAMSILHFAAADRTTDYrqWQCLFDGyrkyINercprGSRCTPLHVALINGCTQGMQIAVESGANK 219
                 677788999********999965655542566688*****9999988888667999983355633445434466***********************99 PP

       Ank_2  80 nlk 82 
                 +++
  CCE29377.1 220 EAT 222
                 887 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.37
       Ank_2  40 eivklLleh.....ad.....ndgr.tpLhyAars...ghleivklLlekgadi 79 
                 e++k Ll+      ++       g  +pL  A +s       ++++L+e+ga i
  CCE29377.1 334 ELLKELLSDlvdrgVNlkkpaP-GLpSPLRRALSSpkaEPRWFFDFLCENGATI 386
                 3445555434223322323322.3336666666555544556667777666655 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0081        29       3      29 ..      54      79 ..      52      81 .. 0.90
   2 !    7.9   0.0    0.0016       5.6       5      28 ..     119     141 ..     116     144 .. 0.91
   3 ?   -0.2   0.0      0.67   2.4e+03       4      16 ..     157     169 ..     156     185 .. 0.73
   4 !    6.6   0.0     0.004        14       3      21 ..     194     212 ..     192     220 .. 0.77
   5 ?    2.3   0.0       0.1   3.6e+02      17      30 ..     293     305 ..     281     306 .. 0.80
   6 ?    1.2   0.0      0.23   8.4e+02       4      30 ..     359     387 ..     358     388 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0081
       Ank_3  3 etpLhlAarsgnleivkfLlenkgadv 29
                 t+Lh+ +  gnl + + Ll+ +ga +
  CCE29377.1 54 STALHFSVIMGNLRLTEKLLD-MGASL 79
                69*******************.99976 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0016
       Ank_3   5 pLhlAarsgnleivkfLlenkgad 28 
                 pL lA ++gn +++k+L++ +gad
  CCE29377.1 119 PLSLAFLQGNSDMCKLLVD-RGAD 141
                 999999*************.9*99 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.67
       Ank_3   4 tpLhlAarsgnle 16 
                 ++Lh+Aa    ++
  CCE29377.1 157 SILHFAAADRTTD 169
                 89****9877665 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.004
       Ank_3   3 etpLhlAarsgnleivkfL 21 
                 +tpLh+A+ +g++  ++  
  CCE29377.1 194 CTPLHVALINGCTQGMQIA 212
                 7**********98755555 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.1
       Ank_3  17 ivkfLlenkgadvn 30 
                 ++ fLle ++adv+
  CCE29377.1 293 LIYFLLE-HHADVH 305
                 6899***.8***97 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.23
       Ank_3   4 tpLhlAarsgnle...ivkfLlenkgadvn 30 
                 +pL +A++s + e     +fL+e +ga ++
  CCE29377.1 359 SPLRRALSSPKAEprwFFDFLCE-NGATIH 387
                 6788888888886644599****.899886 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0027       9.8      37      55 .]      55      73 ..      44      73 .. 0.89
   2 !   12.6   0.0   4.5e-05      0.16       4      46 ..     119     204 ..     117     207 .. 0.75
   3 !    8.1   0.0    0.0012       4.2       3      40 ..     195     231 ..     193     236 .. 0.91
   4 ?   -3.9   0.0         5   1.8e+04      19      28 ..     296     305 ..     293     308 .. 0.81
   5 ?   -1.1   0.0      0.88   3.1e+03      15      43 ..     334     365 ..     331     367 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0027
       Ank_4 37 talhiAakrgnveilklLl 55
                talh+ + +gn++ ++ Ll
  CCE29377.1 55 TALHFSVIMGNLRLTEKLL 73
                9***********9998886 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.5e-05
       Ank_4   4 aLhyaaisgrlelvrlLlekgad..........................................inaqdnrsGe.talhiAakrg 46 
                 +L  a+ +g+ ++++lL+++gad                                          in++++r  + t+lh A+ +g
  CCE29377.1 119 PLSLAFLQGNSDMCKLLVDRGADrqvmtvysrggsramsilhfaaadrttdyrqwqclfdgyrkyINERCPRGSRcTPLHVALING 204
                 67789999***************999997777777777777777777777777777777777777777777666667777777665 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0012
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalh 40 
                 t+Lh a i g+++  ++ +e+ga+  a+ n++ +t+l 
  CCE29377.1 195 TPLHVALINGCTQGMQIAVESGANKEAT-NGESRTPLA 231
                 79*********************99999.******995 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 5
       Ank_4  19 lLlekgadin 28 
                 +Lle+ ad++
  CCE29377.1 296 FLLEHHADVH 305
                 6999999986 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.88
       Ank_4  15 elvrlLlekgad..inaqdnrsGet.alhiAa 43 
                 el++ Ll+  +d  +n  +++ G++ +l +A+
  CCE29377.1 334 ELLKELLSDLVDrgVNLKKPAPGLPsPLRRAL 365
                 78999999888888888888888844888887 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0031        11       2      27 ..      53      79 ..      52      84 .. 0.82
   2 !    5.6   0.0    0.0065        23       5      27 ..     119     142 ..     117     147 .. 0.78
   3 ?   -2.8   0.0       2.9   1.1e+04       4      10 ..     157     163 ..     156     173 .. 0.72
   4 !    5.3   0.0    0.0083        30       3      17 ..     194     205 ..     193     223 .. 0.75
   5 ?   -0.3   0.0      0.48   1.7e+03      16      27 ..     292     304 ..     268     329 .. 0.67
   6 ?   -2.2   0.0       1.9   6.8e+03      15      26 ..     337     349 ..     320     351 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0031
                SBBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank  2 GnTPLHlAatngkkriiklLL.hGAnl 27
                  T+LH  +  g++r ++ LL  GA+l
  CCE29377.1 53 ESTALHFSVIMGNLRLTEKLLdMGASL 79
                67****98877**********559997 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0065
                 HHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   5 PLHlAatngkkriiklLL.hGAnl 27 
                 PL lA   g+ +++klL+ +GA+ 
  CCE29377.1 119 PLSLAFLQGNSDMCKLLVdRGADR 142
                 666754679999******779*95 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.9
                 BHHHHHH CS
         Ank   4 TPLHlAa 10 
                 + LH Aa
  CCE29377.1 157 SILHFAA 163
                 569*998 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0083
                 BBHHHHHHHHTTHHH CS
         Ank   3 nTPLHlAatngkkri 17 
                 +TPLH+A  ng   +
  CCE29377.1 194 CTPLHVALING---C 205
                 7*****97566...3 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.48
                 HHHHHHH.TTTST CS
         Ank  16 riiklLL.hGAnl 27 
                 + i +LL h A++
  CCE29377.1 292 QLIYFLLeHHADV 304
                 4666777777776 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 1.9
                 HHHHHHHH.TTTS CS
         Ank  15 kriiklLL.hGAn 26 
                 k+ +++L+ +G n
  CCE29377.1 337 KELLSDLVdRGVN 349
                 5667777755755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3550.74
//
Query:       CCE29378.1  [L=279]
Description: uncharacterized protein CPUR_03071 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-10   40.9   0.0    0.00039   20.9   0.0    3.1  3  Ank_2     Ankyrin repeats (3 copies)
    4.5e-06   26.9   0.1        1.4    9.5   0.0    4.3  4  Ank       Ankyrin repeat
    6.2e-06   26.7   0.1        3.9    8.2   0.0    3.8  4  Ank_4     Ankyrin repeats (many copies)
    7.8e-05   22.8   0.1        8.7    7.3   0.0    4.1  4  Ank_3     Ankyrin repeat
    0.00014   22.1   0.0       0.24   11.8   0.0    3.3  3  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.8e-05     0.063      32      80 ..      54     112 ..      31     114 .. 0.77
   2 !   16.6   0.0   2.4e-06    0.0087      27      82 ..     149     229 ..     128     230 .. 0.75
   3 !   20.9   0.0   1.1e-07   0.00039       6      65 ..     157     244 ..     152     255 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
       Ank_2  32 yAak.ngnleivklLle...h...ad...ndgrtpLhyAarsghleivklLlekgadin 80 
                 ++++ +g++++v+ L +   +    d   ++  t+Lh+A++ g+ ++ + Ll+ +a+++
  CCE29378.1  54 IFCRwGGQIDAVERLSQwgrQrsdKDevmYETSTALHFAVFLGNVRLTETLLDMKASLT 112
                 678834588999999986542544225658899*******99**********8777776 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 2.4e-06
       Ank_2  27 ktaLhyAakngnleivklLleh.......adnd..................grtpLhyAarsghleivklLlekgadinlk 82 
                  +++++A  + + e++klL++h       ++n+                    tpLh+A ++g ++ +++ le ga ++ k
  CCE29378.1 149 AFPIFLAFLQSDPEMCKLLVDHgagreatINNNvfltgfaktsmspapkisQCTPLHVALFNGCTQGMQIALETGAAKESK 229
                 4899999999999********88887766223345555555566677777699***********99999999888866655 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 1.1e-07
       Ank_2   6 kngnlelvklLl.eg..................adpnk.......ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsgh 65 
                 ++ ++e++klL+ +g                  +   +          t+Lh+A  ng+++ +++ le        ++d rtpL+++a  g 
  CCE29378.1 157 LQSDPEMCKLLVdHGagreatinnnvfltgfakT---SmspapkiSQCTPLHVALFNGCTQGMQIALETgaakesKNSDSRTPLYVCA-LGM 244
                 4555789999998554466665544444444331...03334567889*******************9566556666999******99.465 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00038       1.4       4      28 ..      87     112 ..      86     115 .. 0.86
   2 ?    4.0   0.0     0.021        74      14      25 ..     160     172 ..     146     180 .. 0.77
   3 !    6.4   0.0    0.0036        13       3      17 ..     201     212 ..     200     222 .. 0.82
   4 ?    0.7   0.0      0.23   8.3e+02       3      11 ..     234     244 ..     232     266 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00038
                 BHHHHHHHHTTHHHHHHHHT.TTSTT CS
         Ank   4 TPLHlAatngkkriiklLLh.GAnln 28 
                 T+LH A+  g++r ++ LL+  A+l+
  CCE29378.1  87 TALHFAVFLGNVRLTETLLDmKASLT 112
                 9******************4368886 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.021
                 THHHHHHHH.TTT CS
         Ank  14 kkriiklLL.hGA 25 
                 +++++klL+ hGA
  CCE29378.1 160 DPEMCKLLVdHGA 172
                 478******9996 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0036
                 BBHHHHHHHHTTHHH CS
         Ank   3 nTPLHlAatngkkri 17 
                 +TPLH+A  ng   +
  CCE29378.1 201 CTPLHVALFNG---C 212
                 7*****98777...4 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.23
                 BBHHHHHH..H CS
         Ank   3 nTPLHlAa..t 11 
                 +TPL ++a  +
  CCE29378.1 234 RTPLYVCAlgM 244
                 7****987552 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0013       4.6      36      55 .]      86     105 ..      48     105 .. 0.79
   2 !    8.2   0.0    0.0011       3.9       3      22 ..      87     106 ..      82     118 .. 0.63
   3 !    5.8   0.0    0.0059        21       4      25 ..     151     172 ..     149     181 .. 0.91
   4 !    7.5   0.0    0.0018       6.5       3      44 ..     202     242 ..     201     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0013
       Ank_4  36 etalhiAakrgnveilklLl 55 
                  talh+A+  gnv+ ++ Ll
  CCE29378.1  86 STALHFAVFLGNVRLTETLL 105
                 49**********99999886 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0011
       Ank_4   3 taLhyaaisgrlelvrlLle 22 
                 taLh a+  g+++l + Ll+
  CCE29378.1  87 TALHFAVFLGNVRLTETLLD 106
                 55555555555555555555 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0059
       Ank_4   4 aLhyaaisgrlelvrlLlekga 25 
                 +++ a+ +++ e+++lL+++ga
  CCE29378.1 151 PIFLAFLQSDPEMCKLLVDHGA 172
                 5889999*************96 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0018
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAak 44 
                 t+Lh a   g+++  ++ le+ga   +++n++ +t+l+ +a+
  CCE29378.1 202 TPLHVALFNGCTQGMQIALETGAA-KESKNSDSRTPLYVCAL 242
                 79*******************974.3457*********9884 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0024       8.7       3      28 ..      86     110 ..      84     113 .. 0.86
   2 ?    3.1   0.0     0.055     2e+02       7      27 ..     153     172 ..     151     175 .. 0.78
   3 !    7.1   0.0    0.0028        10       2      23 ..     200     221 ..     199     226 .. 0.78
   4 ?   -2.2   0.0         3   1.1e+04       3      10 ..     234     241 ..     232     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0024
       Ank_3   3 etpLhlAarsgnleivkfLlenkgad 28 
                  t+Lh+A+  gn+ + + Ll+ + a 
  CCE29378.1  86 STALHFAVFLGNVRLTETLLD-MKAS 110
                 59***********99999999.7766 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.055
       Ank_3   7 hlAarsgnleivkfLlenkga 27 
                 +lA ++ ++e++k+L++ +ga
  CCE29378.1 153 FLAFLQSDPEMCKLLVD-HGA 172
                 5566677899*******.787 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0028
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 ++tpLh+A+ +g++  ++  le
  CCE29378.1 200 QCTPLHVALFNGCTQGMQIALE 221
                 58**********9976666665 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3
       Ank_3   3 etpLhlAa 10 
                 +tpL+++a
  CCE29378.1 234 RTPLYVCA 241
                 89999766 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0068        24      16      44 ..      85     113 ..      75     117 .. 0.84
   2 ?    0.4   0.0      0.25     9e+02      22      42 ..     154     174 ..     148     181 .. 0.78
   3 !   11.8   0.0   6.6e-05      0.24      15      55 ..     201     239 ..     197     240 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0068
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnl 44 
                   t+Lh+A+  g+ ++ + Ll++ a+l++
  CCE29378.1  85 TSTALHFAVFLGNVRLTETLLDMKASLTI 113
                 44*******************88777766 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.25
       Ank_5  22 vAakygaadvvrlLlargadl 42 
                 +A  +  +++++lL+++ga +
  CCE29378.1 154 LAFLQSDPEMCKLLVDHGAGR 174
                 677778899999999998865 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 6.6e-05
       Ank_5  15 ggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55 
                 +  tpLhvA  +g+ + +++ l+ ga+   ++s+ +t+l +
  CCE29378.1 201 C--TPLHVALFNGCTQGMQIALETGAAKESKNSDSRTPLYV 239
                 3..9**********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2114.80
//
Query:       CCE29379.1  [L=270]
Description: uncharacterized protein CPUR_03072 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   14.9   0.1       0.45   10.9   0.0    2.5  2  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.028     5e+02       1      23 [.      21      42 ..      21      63 .. 0.81
   2 ?   10.9   0.0   2.5e-05      0.45      26      55 ..     209     241 ..     189     242 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.028
       Ank_5  1 LlehgpadvnrldgggntpLhvA 23
                L+++g  ++  +++g+ +pL + 
  CCE29379.1 21 LVARG-LNLTISEPGWLSPLYIV 42
                67888.99999999999999765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 2.5e-05
       Ank_5  26 ygaadvvrlLl...argadlnltdsrGltaldl 55 
                 y aad +r +l   + g+d + ++s+G+t+l++
  CCE29379.1 209 YSAADAARDILhlrDKGVDMTSRNSYGQTPLEM 241
                 6789999999999******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1955.52
//
Query:       CCE29380.1  [L=688]
Description: uncharacterized protein CPUR_03073 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-06   26.9   0.8    8.5e-06   25.5   0.8    1.7  1  F-box       F-box domain
    3.9e-06   26.7   1.2    3.9e-06   26.7   1.2    2.1  2  F-box-like  F-box-like
     0.0036   18.0   1.3       0.13   13.1   0.1    2.9  2  TPR_14      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.4   0.1        2.8    7.7   0.0    2.7  2  TPR_11      TPR repeat
      0.021   14.6   0.1         26    4.8   0.0    3.5  3  TPR_1       Tetratricopeptide repeat
      0.079   13.3   2.0       0.17   12.2   0.1    2.3  3  TPR_12      Tetratricopeptide repeat
       0.73   10.0   2.4        7.5    6.8   0.8    3.2  2  FNIP        FNIP Repeat


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.8   3.3e-09   8.5e-06       4      40 ..     194     230 ..     192     232 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.3e-09
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwrilidsd 40 
                 ++LP e++ +I+  L++++l  + rV+k+w +++ s+
  CCE29380.1 194 LCLPAELVTQIFLLLDFTELPVCLRVCKKWARILTSP 230
                 79******************************99875 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.3   3.4e+03      26      37 ..      59      70 ..      43      77 .. 0.75
   2 !   26.7   1.2   1.5e-09   3.9e-06       3      38 ..     195     230 ..     193     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.3
  F-box-like 26 lVCrrWrrvald 37
                ++C+ +  va+ 
  CCE29380.1 59 CTCKNFEKVAAE 70
                79****999965 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 1.5e-09
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt 38 
                  LP E+  qIF  L++++L  + +VC++W+r+  ++
  CCE29380.1 195 CLPAELVTQIFLLLDFTELPVCLRVCKKWARILTSP 230
                 6***********99******************9544 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.13   3.3e+02       9      30 ..      19      40 ..      16      46 .. 0.72
   2 !   13.1   0.1   5.3e-05      0.13       3      42 ..     101     140 ..      99     142 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.13
      TPR_14  9 eallalGdpdeAiallrralal 30
                 +++a++ ++eAi+  ++al+ 
  CCE29380.1 19 LVEFARQAHEEAIEEHEQALEM 40
                5677888888888888888874 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 5.3e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 al +    ++alG+++ Ai+ ++++l+laP  ++ +l+l+
  CCE29380.1 101 ALDLQITTFEALGKLEHAINSAEWMLELAPRLPDGYLRLG 140
                 677778899***************************9998 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0011       2.8       1      22 [.      18      39 ..      18      40 .. 0.94
   2 ?    4.9   0.0    0.0083        21       7      37 ..     112     142 ..     109     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0011
      TPR_11  1 GdayyeqGkyeeAieaYkkAlk 22
                G + ++++  eeAie+ ++Al+
  CCE29380.1 18 GLVEFARQAHEEAIEEHEQALE 39
                7899****************97 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0083
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGla 37 
                 +Gk+e Ai++ +  l+l P  ++ y+ LG++
  CCE29380.1 112 LGKLEHAINSAEWMLELAPRLPDGYLRLGNI 142
                 788888888888889**************96 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0      0.01        26       7      30 ..      17      40 ..      15      43 .. 0.90
   2 ?    3.2   0.0     0.034        87      11      32 ..     109     130 ..     107     132 .. 0.90
   3 ?    2.5   0.1     0.058   1.5e+02       2      20 ..     134     152 ..     133     165 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.01
                HHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1  7 lGnayfklgkydeAleyyekALel 30
                +G++ f  + ++eA+e  e+ALe 
  CCE29380.1 17 IGLVEFARQAHEEAIEEHEQALEM 40
                6889999999************95 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.034
                 HHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  11 yfklgkydeAleyyekALelnP 32 
                 +  lgk++ A+   e  Lel P
  CCE29380.1 109 FEALGKLEHAINSAEWMLELAP 130
                 678****************999 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.058
                 HHHHHHHHHHHHTT-HHHH CS
       TPR_1   2 kalynlGnayfklgkydeA 20 
                 + + +lGn+ ++++k + A
  CCE29380.1 134 DGYLRLGNIARRQQKDEYA 152
                 789*********9986666 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.7e-05      0.17       9      36 ..      17      44 ..      10      47 .. 0.85
   2 ?   -0.7   0.1       0.7   1.8e+03      54      75 ..     108     129 ..      96     131 .. 0.79
   3 ?   -3.9   0.0       6.9   1.8e+04       8      18 ..     138     148 ..     136     158 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.7e-05
      TPR_12  9 laavlrrlgrydeAlellekaleiarrl 36
                +++v+++++ ++eA+e +e+ale++ ++
  CCE29380.1 17 IGLVEFARQAHEEAIEEHEQALEMFASA 44
                7999999999999999999999998665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.7
      TPR_12  54 lyralgryeeAlelleealaia 75 
                 +++alg++e A++  e  l++a
  CCE29380.1 108 TFEALGKLEHAINSAEWMLELA 129
                 5678899999998888887776 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 6.9
      TPR_12   8 nlaavlrrlgr 18 
                 +l+++ rr+++
  CCE29380.1 138 RLGNIARRQQK 148
                 56666665543 PP

>> FNIP  FNIP Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.69   1.8e+03       8      16 ..     304     312 ..     301     314 .. 0.79
   2 ?    6.8   0.8    0.0029       7.5      11      33 ..     372     396 ..     333     401 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.69
        FNIP   8 geLPsnlei 16 
                  +LPsn++i
  CCE29380.1 304 LSLPSNVKI 312
                 579999997 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0029
        FNIP  11 P..snleiLilgrdFnqkiligsLP 33 
                 P  +nl+ L +g+d++++  i s+P
  CCE29380.1 372 PslPNLKTLRIGDDYQHPDDIISFP 396
                 3778*****************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 5166.46
//
Query:       CCE29381.1  [L=572]
Description: uncharacterized protein CPUR_03074 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-06   26.7   1.5    3.7e-06   26.7   1.5    2.0  2  F-box         F-box domain
    2.4e-05   24.1   2.4    2.4e-05   24.1   2.4    2.9  3  F-box-like    F-box-like
  ------ inclusion threshold ------
      0.061   14.2   0.0        0.3   12.0   0.0    2.3  1  TPR_14        Tetratricopeptide repeat
       0.19   10.8   0.3       0.32   10.0   0.3    1.2  1  P2X_receptor  ATP P2X receptor
        4.2    7.9   6.9         28    5.3   0.1    4.8  6  LRR_4         Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   1.5     1e-09   3.7e-06       4      40 ..     170     206 ..     168     209 .. 0.94
   2 ?   -2.2   0.2       1.2   4.2e+03       6      14 ..     259     267 ..     258     267 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1e-09
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwrilidsd 40 
                 ++LP e++  I+  L+++dl  + rV+k+w +++ s+
  CCE29381.1 170 LCLPAELVTRIFLLLDFTDLPVCLRVCKKWARILTSP 206
                 79******************************99875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
                 S-HHHHHHH CS
       F-box   6 LPsevlrhI 14 
                 LP+e+l +I
  CCE29381.1 259 LPNELLPNI 267
                 9*****988 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.5   5.4e+03      26      37 ..      35      46 ..      30      53 .. 0.81
   2 !   24.1   2.4   6.8e-09   2.4e-05       3      37 ..     171     205 ..     169     208 .. 0.91
   3 ?    0.2   0.4      0.21   7.4e+02       3      12 ..     258     267 ..     256     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.5
  F-box-like 26 lVCrrWrrvald 37
                ++C+ +  +a+ 
  CCE29381.1 35 CTCKNFEKIAAE 46
                69***9999965 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 6.8e-09
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvald 37 
                  LP E+  +IF  L+++dL  + +VC++W+r+  +
  CCE29381.1 171 CLPAELVTRIFLLLDFTDLPVCLRVCKKWARILTS 205
                 6***********99******************854 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.21
  F-box-like   3 rLPdEiLlqI 12 
                 +LP+E+L  I
  CCE29381.1 258 QLPNELLPNI 267
                 7999999776 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.4e-05       0.3       2      42 ..      76     116 ..      75     118 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.4e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 eal +  + ++alG+ d A++ ++++l+laP  ++ +l+l+
  CCE29381.1  76 EALDLQISTFEALGKIDHAMNNAEWMLELAPRLPDGYLRLG 116
                 78888999*****************************9998 PP

>> P2X_receptor  ATP P2X receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   8.9e-05      0.32     224     269 ..      34      81 ..      17      90 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 8.9e-05
  P2X_receptor 224 eeagenfeelakkGgvigieiewdC..dLDksaekCkPkYsfrrlddk 269
                   + + +nfe++a++Gg+i  e  ++C  d+ ++++kC   Y+++ ld +
    CCE29381.1  34 KCTCKNFEKIAAEGGSIFREALYTChcDVGRTFSKCDNVYHMEALDLQ 81 
                   56779************99998876115557899**********9977 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.1   4.1e+03      21      31 ..     146     156 ..     139     163 .. 0.74
   2 ?    2.3   0.1      0.07   2.5e+02      20      33 ..     268     281 ..     258     294 .. 0.73
   3 ?   -3.0   0.0       3.2   1.1e+04      23      28 ..     331     336 ..     327     343 .. 0.75
   4 ?   -3.8   0.0         5   1.8e+04      13      28 ..     354     369 ..     349     372 .. 0.63
   5 ?   -3.0   0.0       3.3   1.2e+04      18      28 ..     395     407 ..     386     408 .. 0.58
   6 ?    5.3   0.1    0.0077        28      18      32 ..     492     507 ..     486     518 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.1
                 H-TT--EEE-. CS
       LRR_4  21 klpnLkeLdLs 31 
                 + p+L++L++ 
  CCE29381.1 146 SSPKLQQLYVA 156
                 47999999984 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.07
                 HH-TT--EEE-.-S CS
       LRR_4  20 eklpnLkeLdLsgN 33 
                   lpn k+L +  N
  CCE29381.1 268 PHLPNVKTLRIGYN 281
                 24*********667 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.2
                 TT--EE CS
       LRR_4  23 pnLkeL 28 
                 pnLk+L
  CCE29381.1 331 PNLKVL 336
                 566665 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 5
                 --E-S-HHH-TT--EE CS
       LRR_4  13 ltdiplleklpnLkeL 28 
                 l+++ ll +l++ +++
  CCE29381.1 354 LSTLRLLIGLKSVQYV 369
                 5566666667776665 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 3.3
                 -.HH.H-TT--EE CS
       LRR_4  18 l.le.klpnLkeL 28 
                 l ++ k+ nL+++
  CCE29381.1 395 LtPYsKFQNLRVV 407
                 3323358888875 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.0077
                 -HHH-TT--EEE-..- CS
       LRR_4  18 lleklpnLkeLdL.sg 32 
                 +l+ +pnL++L++ s 
  CCE29381.1 492 FLATFPNLRTLSIdSY 507
                 3667*********633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 4553.99
//
Query:       CCE29382.1  [L=673]
Description: uncharacterized protein CPUR_03075 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-10   40.1   1.6    2.5e-10   40.1   1.6    2.7  2  F-box-like  F-box-like
    3.9e-09   36.2   0.4    1.7e-08   34.1   0.4    2.3  1  F-box       F-box domain
  ------ inclusion threshold ------
       0.16   12.9   0.1       0.64   11.0   0.1    2.2  1  TPR_14      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.4      0.27   1.6e+03      26      43 ..      44      61 ..      32      63 .. 0.80
   2 !   40.1   1.6   4.2e-14   2.5e-10       2      47 ..     179     226 ..     178     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.27
  F-box-like 26 lVCrrWrrvaldtplLWr 43
                ++C+ + rv++  +++ r
  CCE29382.1 44 CTCKNFDRVVAEGRSIFR 61
                79*******988777665 PP

  == domain 2  score: 40.1 bits;  conditional E-value: 4.2e-14
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrva...ldtplLWrrlvl 47 
                 ++LP+Ei  +IFsyL++++Ll + +VC++W+r      ++ +LWr +v+
  CCE29382.1 179 LSLPTEIVAHIFSYLEFTQLLFCLRVCKQWKRTLtspVHC-QLWRAMVF 226
                 58******************************99565566.99998876 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.4   2.9e-12   1.7e-08       4      40 ..     179     215 ..     176     231 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 2.9e-12
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwrilidsd 40 
                 ++LP e++ hI+++L+++ ll + rV+k w++ + s+
  CCE29382.1 179 LSLPTEIVAHIFSYLEFTQLLFCLRVCKQWKRTLTSP 215
                 79******************************99887 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00011      0.64       2      40 ..      85     123 ..      84     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawll 40 
                 eal+ + + ++alG++d+A + ++++l+laP  ++ +l+
  CCE29382.1  85 EALKSRSAMYEALGKLDRAKKDAEWMLELAPRLPDGYLR 123
                 678888999**********************98877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5067.28
//
Query:       CCE29383.1  [L=366]
Description: uncharacterized protein CPUR_03076 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2909.43
//
Query:       CCE29384.1  [L=358]
Description: uncharacterized protein CPUR_03077 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2490.07
//
Query:       CCE29385.1  [L=369]
Description: uncharacterized protein CPUR_03078 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.23   11.6   1.6        1.2    9.3   0.2    2.2  2  zf-RAG1   Recombination-activating protein 1 zinc-finger doma


Domain annotation for each model (and alignments):
>> zf-RAG1  Recombination-activating protein 1 zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.024   4.4e+02      22      28 ..      38      44 ..      36      46 .. 0.86
   2 ?    9.3   0.2   6.8e-05       1.2      16      28 ..     194     206 ..     193     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.024
     zf-RAG1 22 HlssHKE 28
                H  sHKE
  CCE29385.1 38 HPRSHKE 44
                999***9 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 6.8e-05
     zf-RAG1  16 LEkYnqHlssHKE 28 
                 L +Y qH+  HKE
  CCE29385.1 194 LDRYRQHIREHKE 206
                 89*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2724.11
//
Query:       CCE29386.1  [L=1020]
Description: probable F-box/WD-repeat protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-23   81.7   7.3     0.0061   17.4   0.0    7.0  7  WD40         WD domain, G-beta repeat
    5.8e-13   48.5   2.6    5.8e-13   48.5   2.6    1.8  2  F-box-like   F-box-like
    6.6e-07   29.1   0.3    1.2e-05   25.0   0.1    2.4  2  F-box        F-box domain
    8.1e-05   22.8   0.0        2.1    8.7   0.0    4.1  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
      0.007   16.2   0.0      0.023   14.6   0.0    1.8  1  F-box_4      F-box
  ------ inclusion threshold ------
      0.014   16.0   0.0      0.029   15.0   0.0    1.4  1  MgtE_N       MgtE intracellular N domain
      0.019   13.6   0.1        1.5    7.4   0.0    2.4  2  Nup160       Nucleoporin Nup120/160
      0.061   13.1   0.8        1.1    9.1   0.2    2.7  2  SmpA_OmlA    SmpA / OmlA family
       0.12   11.6   0.0       0.53    9.5   0.1    1.8  2  WD40_like    WD40-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.1e-06    0.0061       8      38 .]     334     363 ..     325     363 .. 0.89
   2 !   17.2   0.0   3.6e-06    0.0071       7      38 .]     374     408 ..     369     408 .. 0.90
   3 !   11.3   0.0   0.00026      0.51       6      38 .]     417     449 ..     412     449 .. 0.77
   4 !   14.1   0.1   3.3e-05     0.066       5      38 .]     497     529 ..     493     529 .. 0.73
   5 !   13.6   0.0   4.9e-05     0.097       3      38 .]     535     569 ..     533     569 .. 0.92
   6 ?   -3.6   0.0         9   1.8e+04       5      16 ..     577     589 ..     575     590 .. 0.72
   7 ?    5.8   0.1     0.014        28      25      37 ..     667     679 ..     657     680 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.1e-06
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +GH  +v+ l  + d ++l+sGs+D++ riW+
  CCE29386.1 334 EGHqECVYTL--QFDAHYLVSGSRDQSMRIWN 363
                 5997779999..889999*************8 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 3.6e-06
                 EESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 
                 l GH +sv +l+   sp+ ++++sGs D +v +W+
  CCE29386.1 374 LVGHsGSVLCLQfdASPEEDLIVSGSSDSNVFVWK 408
                 67**777*9999999999999****99*******6 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00026
                 EEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tlt.GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++t +H  sv  +    d++ l+++s+D+t++i++
  CCE29386.1 417 SITnAHrESVLNV--RFDKRILVTSSKDKTIKIFN 449
                 4433888888888..558888************97 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 3.3e-05
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + l+GH   v+++  +  g+ ++s s D+++++Wd
  CCE29386.1 497 GRLEGHgAAVNAI--QVLGRTIVSVSGDRHIKVWD 529
                 5689**6669999..444444666555*******9 PP

  == domain 5  score: 13.6 bits;  conditional E-value: 4.9e-05
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 c++t+ +H +++ ++    dg+ ++sGs D  v i+d
  CCE29386.1 535 CTQTIPAHdKGIACV--EFDGRRIVSGSSDYEVCIFD 569
                 99999***999****..889*******99******98 PP

  == domain 6  score: -3.6 bits;  conditional E-value: 9
                 EEEESSSS.EEEE CS
        WD40   5 rtltGHss.vtsl 16 
                   l+GH + v+ +
  CCE29386.1 577 AQLRGHAHlVRTV 589
                 5689**7677766 PP

  == domain 7  score: 5.8 bits;  conditional E-value: 0.014
                 EEEEETTSEEEEE CS
        WD40  25 lasGsdDgtvriW 37 
                 ++sGs+D+++ iW
  CCE29386.1 667 IVSGSYDQSIIIW 679
                 569********** PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.3   8.6e+03       2      18 ..      65      81 ..      64      83 .. 0.84
   2 !   48.5   2.6   2.9e-16   5.8e-13       2      46 ..      89     132 ..      88     134 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.3
  F-box-like  2 srLPdEiLlqIFsyLpp 18
                ++LP+  + +I ++L+p
  CCE29386.1 65 DNLPTSAIAEIVQRLNP 81
                689**999999999876 PP

  == domain 2  score: 48.5 bits;  conditional E-value: 2.9e-16
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlv 46 
                 ++LP Ei+l+++ yL+p +L+ +a++Cr+W+++ald   LW rl+
  CCE29386.1  89 QYLPAEICLKVLGYLDPVSLVCVARTCRQWYELALDR-KLWERLY 132
                 68*********************************99.*****98 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.16   3.2e+02       3      20 ..      64      81 ..      62      82 .. 0.90
   2 !   25.0   0.1   6.2e-09   1.2e-05       6      45 ..      91     130 ..      89     133 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.16
                HHHS-HHHHHHHHHTS-H CS
       F-box  3 lsrLPsevlrhILerLpl 20
                l++LP   + +I +rL++
  CCE29386.1 64 LDNLPTSAIAEIVQRLNP 81
                789*************87 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 6.2e-09
                 S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH CS
       F-box   6 LPsevlrhILerLplsdllalrrVSkgwrilidsdrlwck 45 
                 LP e+ +++L +L++++l+  +r+++ w+ l  + +lw +
  CCE29386.1  91 LPAEICLKVLGYLDPVSLVCVARTCRQWYELALDRKLWER 130
                 8999**********************************87 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.016        32      22      90 ..     298     387 ..     294     389 .. 0.83
   2 !    8.7   0.0     0.001       2.1       4      66 ..     389     449 ..     386     452 .. 0.81
   3 ?    0.4   0.0      0.41   8.1e+02      50      89 ..     513     551 ..     507     554 .. 0.89
   4 ?    3.8   0.0     0.035        70      34      81 ..     539     584 ..     518     592 .. 0.78
   5 ?   -2.5   0.0       3.4   6.7e+03      14      32 ..     671     689 ..     667     700 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.016
  ANAPC4_WD40  22 fRlngqrvwtl.......................eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +R+n++ ++++                       +e+++++ v  L++  d + L+ +  d ++r+ ++ ++++ +   v+++ +v cl++ 
   CCE29386.1 298 YRINWKYLYNMrrrlesnwelgkyttfqlphpnyPEEGHQECVYTLQF--DAHYLVSGSRDQSMRIWNIRTQRLARPPLVGHSGSVLCLQFD 387
                  577777777777777777777888888888888888899999999977..789********************9999989888899999875 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.001
  ANAPC4_WD40   4 cptmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  +p+ DLi  +++d+++ v  ++  ++++  ++++ ++v ++  + d ++L+ + +d ++++++
   CCE29386.1 389 SPEEDLIVSGSSDSNVFVWKFSTGELVQSITNAHRESVLNV--RFDKRILVTSSKDKTIKIFN 449
                  78999999999999999999988887777677777777555..55889999999999999986 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.41
  ANAPC4_WD40  50 gklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  g+ ++ +  d ++++ d  ++ + ++++++++  ++c+++
   CCE29386.1 513 GRTIVSVSGDRHIKVWDWPDQVCTQTIPAHDK-GIACVEF 551
                  899999999*******************9999.5***987 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.035
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                   +++d+ + ++++  dg+ ++ + sd ev ++da +g  v +l+ +++
   CCE29386.1 539 IPAHDKGIACVEF--DGRRIVSGSSDYEVCIFDAPTGLKVAQLRGHAH 584
                  4566666666654..9*********************99999887766 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 3.4
  ANAPC4_WD40  14 tedgellvfRlngqrvwtl 32 
                  + d+++++ R + + vw+ 
   CCE29386.1 671 SYDQSIIIWRRDKEGVWKP 689
                  66899999********987 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.1e-05     0.023       5      55 ..      88     139 ..      85     153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
     F-box_4   5 LssLPlevlqhiaslLDsfsLsqLslvskllrevc.ssllqergiVllkWek 55 
                 ++ LP e+  +++++LD +sL+++++++++  e++  + l er   l  W+ 
  CCE29386.1  88 VQYLPAEICLKVLGYLDPVSLVCVARTCRQWYELAlDRKLWERLYYLEGWKA 139
                 567***************************9999834678888777777765 PP

>> MgtE_N  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.4e-05     0.029      39      87 ..      57     105 ..      48     108 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.4e-05
                 CCCCCHHHHCS-HHHHHHHHCCS-HHHHHHHHCCCHHHHHHHHHHCS-H CS
      MgtE_N  39 edlqeeliealsdeelaelleeldsDdaadlleelpeekveellsalde 87 
                  +l  +l+++l+ + +ae+++ l++   +d+++ lp+e+  ++l  ld+
  CCE29386.1  57 KELTLTLLDNLPTSAIAEIVQRLNPRLYIDFVQYLPAEICLKVLGYLDP 105
                 5677899*************************************99997 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00074       1.5     229     253 ..     346     370 ..     337     372 .. 0.83
   2 ?    3.5   0.0     0.011        23     232     256 ..     515     539 ..     504     550 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00074
                 TTTEEEEEETT-EEEEEETTTTEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkcl 253
                 +  yl++ srd+ +r+Wn++t++++
  CCE29386.1 346 DAHYLVSGSRDQSMRIWNIRTQRLA 370
                 788999***************9986 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.011
                 EEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 232 ylfalsrdgkLrvWnlltgkclati 256
                 +++++s d+ ++vW+  ++ c+ ti
  CCE29386.1 515 TIVSVSGDRHIKVWDWPDQVCTQTI 539
                 6899******************998 PP

>> SmpA_OmlA  SmpA / OmlA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2   0.00053       1.1      38      69 ..     301     353 ..     293     355 .. 0.82
   2 ?    1.3   0.0      0.15     3e+02      51      70 ..     421     440 ..     408     441 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00053
                 EEEEEEEETTE..........................EEEEEEEE-TTSBEEE CS
   SmpA_OmlA  38 rwdYvynfkrggka.....................veqqvlavyFdddglvrs 69 
                  w Y+yn++r+ +                      ++++v++++Fd++ lv+ 
  CCE29386.1 301 NWKYLYNMRRRLESnwelgkyttfqlphpnypeegHQECVYTLQFDAHYLVSG 353
                 7*********844466777777888999999999999**********999975 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.15
                 ...EEEEEEEE-TTSBEEEE CS
   SmpA_OmlA  51 aveqqvlavyFdddglvrsi 70 
                 a+ ++vl v+Fd++ lv+s+
  CCE29386.1 421 AHRESVLNVRFDKRILVTSS 440
                 466899********999975 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.51     1e+03       3      32 ..     340     367 ..     333     370 .. 0.70
   2 ?    9.5   0.1   0.00027      0.53       6      60 ..     386     439 ..     383     450 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.51
   WD40_like   3 iYsidiskkgslilyGgkddkctvlklesl 32 
                 +Y++++  ++++++ G++d+ +++ +++++
  CCE29386.1 340 VYTLQF--DAHYLVSGSRDQSMRIWNIRTQ 367
                 566655..7777777777777777777665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00027
   WD40_like   6 idiskkgslilyGgkddkctvlkleslesvsives.fedSvifvklldddlilvvt 60 
                  d s++ +li+ G+ d ++ v k+ ++e+v+++++  ++Sv+ v++  d+ ilv++
  CCE29386.1 386 FDASPEEDLIVSGSSDSNVFVWKFSTGELVQSITNaHRESVLNVRF--DKRILVTS 439
                 588999**********************9987765278*****998..55666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1020 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.79u 0.25s 00:00:01.04 Elapsed: 00:00:00.41
# Mc/sec: 7381.27
//
Query:       CCE29387.1  [L=1014]
Description: related to Scd1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-38  131.3   0.2    4.8e-38  130.2   0.2    1.6  1  PH_10     Pleckstrin homology domain
    1.6e-32  111.6   0.1    3.3e-32  110.6   0.1    1.6  1  CDC24     CDC24 Calponin
    1.6e-25   90.4   0.0    2.9e-25   89.6   0.0    1.4  1  RhoGEF    RhoGEF domain
    1.4e-07   31.4   0.0    3.2e-07   30.2   0.0    1.5  1  PB1       PB1 domain


Domain annotation for each model (and alignments):
>> PH_10  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.2   0.2   1.1e-41   4.8e-38       1     123 []     435     563 ..     435     563 .. 0.91

  Alignments for each domain:
  == domain 1  score: 130.2 bits;  conditional E-value: 1.1e-41
       PH_10   1 ekfGeLllhdtltVkkd.sdsere.........yevyLFekillcvkevkeekkkksksssllkkkssssskkkktklqLKGrilisnvtevtssskpg 89 
                 e+fG+L++h+++ V ++ +d+e++         ye+yLFe+illc+k+++ + k+k++s+s++ + +   +k+k+tklqLKGri+++nvt+++s skpg
  CCE29387.1 435 ETFGKLMMHGQHIVITAkNDQEKDrnpnvrpcqYEIYLFESILLCCKDASGK-KDKTRSTSSKINPH---TKTKTTKLQLKGRIFMTNVTDIVSLSKPG 529
                 68************99777777779999999999**************8866.77777777777765...469************************** PP

       PH_10  90 syslqiswkgdkelesftlrfkneeqlkkWesal 123
                 s+s+qi+w+gd+++e+ft++f +ee ++kW+ +l
  CCE29387.1 530 SHSVQIWWRGDPGVENFTIKFLHEELMRKWAVCL 563
                 ******************************9876 PP

>> CDC24  CDC24 Calponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.1   7.4e-36   3.3e-32       1      89 []     117     205 ..     117     205 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 7.4e-36
       CDC24   1 dPvtqlwkllrqGspLlalfNalkpeeklevdevksddlkvcKksvydFllackkeLgfedeelftisdlfsedttdlvkvlkvvnkvl 89 
                 dPv+ lw+l+r+G+pLl+++N l+p+e+l+v++ +++++k++K ++++F++ac+keL+++ ++ f+i+dl+++dt+++vkv++vvn+vl
  CCE29387.1 117 DPVDPLWNLFRTGYPLLTIYNSLQPTEPLKVEDPNASESKKSKIAIFKFVQACMKELQVPPAQSFVITDLMGNDTSGFVKVTQVVNYVL 205
                 9*************************************************************************************997 PP

>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0   6.4e-29   2.9e-25       1     181 [.     240     406 ..     240     407 .. 0.84

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 6.4e-29
                 HHHHHHHHHHHHHHHHHHHHHHTHCCCHHCTCCHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHHHHHHHHCHHH CS
      RhoGEF   1 vikElleTErsYvrdLkvlvevylkplselevlseeeikiiFsnieeilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkkYseYcsnypn 99 
                 vikE+l+TEr+Yv+dL+ l      +l+  ++l+ + +++iF ni+ il+l+ + +l ++e+ l   +  k  q+ g  f  + + f+ Y ++++n+ +
  CCE29387.1 240 VIKEMLDTERKYVQDLENLH-DLKTTLE-GRNLPGDVMHQIFFNINAILDLQ-RRFLIRMETTL---SMPKAVQRWGAPFTFYEESFQLYNSFIANQRK 332
                 79*****************6.5555565.44799******************.55555599999...6788899************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHH.HHHHHHHHHHHHHHHHH CS
      RhoGEF 100 alkllkelskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpeshpdy.ealkkaleaikevasei 181
                 a ++ +        f ++ ++  +   ++  +L+ +L+kP+qRl++YpLLL++l++nt  ++pd  ++l   ++a ++++++ 
  CCE29387.1 333 AAHVASL------VFDQIHQS-GHPVATDLNTLDGFLLKPMQRLVKYPLLLRDLARNT--EDPDIqNDLWAGVDAAERILKRS 406
                 ****999......56666676.3333447779**************************..56777578888888888877765 PP

>> PB1  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   7.2e-11   3.2e-07      15      67 ..     930     988 ..     915     998 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 7.2e-11
                 EEEEGSSS-HHHHHHHHHHHHTST......CCSEEEEEEETTSSEEEESSHHHHHHHHH CS
         PB1  15 elsvssnisfeeLrakvekrfkls......dedvklkYpdedgdlVtitsDeDLeeale 67 
                 +l v+ ni++++L++++  ++++       +  +kl Y+dedgd+Vti sD+D + a+ 
  CCE29387.1 930 TLVVACNITYQSLIDRIDAKLARFmpssigKGMLKLRYRDEDGDFVTIQSDDDIQIAFM 988
                 5688889999999998888887777777***************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.39
# Mc/sec: 7765.01
//
Query:       CCE29388.1  [L=91]
Description: related to ribosomal protein S37 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 680.36
//
Query:       CCE29389.1  [L=545]
Description: related to aerobactin siderophore biosynthesis protein iucB [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-43  147.1   0.1    4.2e-43  146.5   0.1    1.2  1  Acetyltransf_8  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.01   16.5   0.0      0.021   15.5   0.0    1.5  1  Acetyltransf_3  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   0.1   4.7e-47   4.2e-43       4     145 .]     388     525 ..     386     525 .. 0.93

  Alignments for each domain:
  == domain 1  score: 146.5 bits;  conditional E-value: 4.7e-47
                     GGHHHHHHHCTSCCCHHHH-----HHHHHHHHHHHC.STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS..---TT-EEEEEEESSHHHCTTTC CS
  Acetyltransf_8   4 aDlellhrWmnrprvaewweeagtleevrellakldadphsepliglldgepvgyfeiYwakedelaeyy..daepgdrGiHlligeaeargkgl 96 
                     +D ell++W+++prv+e+w++ ++    + l+a l+ ++hs+p+igl+dg+p+gyfe+Ywaked l+++   ++ ++drG+H++ige +   +g+
      CCE29389.1 388 SDKELLQSWFRNPRVKEFWGDYES----DFLEAGLR-SKHSFPVIGLWDGVPFGYFEVYWAKEDILGRHVgsEVADWDRGVHIMIGEDWS--RGR 475
                     699********************7....66666775.*****************************999889**************9877..789 PP

                     HHHHHHHHHHHHHC.CTT--EEEE--BTT-HHHHHHHHHTT-EEEEEEEE CS
  Acetyltransf_8  97 ttallralvhylfa.dprtrrvvvEPdvrNerairllekaGfekekevdl 145
                     + a+l++lvh++f+ d+rt++v++EP+v+N+r++r+l+++Gf kek+v++
      CCE29389.1 476 VGAWLTSLVHWCFTsDNRTMNVCLEPRVDNKRVLRHLDRCGFSKEKQVSF 525
                     *************6488******************************986 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   2.4e-06     0.021      11     137 ..     389     517 ..     383     518 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.4e-06
  Acetyltransf_3  11 Dlealfelrsdpevmrylpepltleeaeewlera.......waeeseeeg..yg.waivlkdtgviGsvglrdleeedeeaelgymlapsfwgkG 95 
                     D e l +++ +p+v ++ +  +++  +  + +++       w      +g  +g + +   +++++G     ++ ++d    + +m++++ w +G
      CCE29389.1 389 DKELLQSWFRNPRVKEFWGDYESDFLEAGLRSKHsfpviglW------DGvpFGyFEVYWAKEDILGRHVGSEVADWD--RGVHIMIGED-WSRG 474
                     656667899999999975554433333333333365654444......442255566655555589987445455554..5799******.8*** PP

  Acetyltransf_3  96 yateavralleyafeelgler.lvavidkeNeaSirvleklGf 137
                          + +l++++f+  + ++ ++ +   +N++  r l ++Gf
      CCE29389.1 475 RVGAWLTSLVHWCFTSDNRTMnVCLEPRVDNKRVLRHLDRCGF 517
                     **************77766655********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3967.25
//
Query:       CCE29390.1  [L=112]
Description: uncharacterized protein CPUR_03083 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 905.05
//
Query:       CCE29391.1  [L=364]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.9e-14   51.7   0.0    5.2e-08   32.6   0.0    2.1  2  Pkinase      Protein kinase domain
    2.8e-06   26.8   0.0     0.0021   17.4   0.0    2.1  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.9e-07    0.0026       1      82 [.      48     134 ..      48     162 .. 0.87
   2 !   32.6   0.0   5.8e-12   5.2e-08     135     212 ..     226     301 ..     215     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.9e-07
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEE....SSEEEEEEE--TT CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk..hpnivrlyevfee....kdelylvleyveg 82 
                 y+ l+klG Gs+++   a++++++  vA+K++  + + +++  ++lr ++ l k +  +++++++++ f++     ++ +lvle+v  
  CCE29391.1  48 YKILHKLGWGSVATTWAAKDQKRHLYVAIKIMVSKVEGSREL-NMLRALSALPKDHpgSSYVCQMLDHFTHvgpnGTHTCLVLELVGP 134
                 77899****************************999999886.9999999999888899**********99999999*******9864 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 5.8e-12
                 TEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHT CS
     Pkinase 135 gelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldq 212
                   +Ki+DFG a   +     ++       +APE++ + + +  vD+W++G++++el++g pp  + ++ + v++++ +
  CCE29391.1 226 PSIKIIDFGDAFFSDDAP--STLNNPFVLRAPEIVFKDRLDLRVDLWTAGCLIFELVCGIPPIDAGSTLTLVRQMIAT 301
                 569*******98888866..6777777789**********************************77776655555544 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00026       2.4       6      83 ..      53     132 ..      48     160 .. 0.76
   2 !   17.4   0.0   2.3e-07    0.0021     140     237 ..     226     317 ..     216     335 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00026
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS..-BTTB--EEEEEE....SSSSEEEEEE-- CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl..khpnivkllgvct....keepllivteyv 83 
                  klG G+ ++ + +    +++k+++ Va+K++ ++ + +++ ++l+ ++ + k       + ++l   t    ++ ++++v+e+v
   CCE29391.1  53 KLGWGSVATTWAA----KDQKRHLYVAIKIMVSKVEGSRELNMLRALSALPKDhpGSSYVCQMLDHFThvgpNGTHTCLVLELV 132
                  5555544444433....66799***********999999999999999997653456778888888885444444588888876 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 2.3e-07
                  TEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHH CS
  Pkinase_Tyr 140 kvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyel 237
                    +ki DfG a     dd   + ++ + p+   apE++++ ++  + D W  G l++E+++ g  p+   ++ ++++++ + +  e p+ +++++y++
   CCE29391.1 226 PSIKIIDFGDAFFS--DD---APSTLNNPFVLRAPEIVFKDRLDLRVDLWTAGCLIFELVC-GIPPIDAGSTLTLVRQMIATTSEELPSRWQAQWYDM 317
                  56778888755544..22...234456678888***************************9.******99*********99999999*9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2975.02
//
Query:       CCE29392.1  [L=404]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-26   93.9   0.0    2.4e-12   46.8   0.0    2.1  2  Pkinase      Protein kinase domain
    1.4e-11   44.2   0.0    1.8e-05   24.2   0.0    2.1  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   2.7e-16   2.4e-12       1     131 [.      49     186 ..      49     199 .. 0.90
   2 !   45.3   0.0   7.8e-16     7e-12     129     264 .]     238     403 ..     233     403 .. 0.83

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 2.7e-16
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHH... CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk..hpnivrlyevfee....kdelylvleyveggeladlle... 90 
                 y+ l+klG Gsf++   a+++++++ vAvK++  + + + +  ++lr ++ l k +  ++++++++++f++     ++ +lvle+v  + +a+++    
  CCE29392.1  49 YKILHKLGWGSFATTWAAKDQKDDRYVAVKIMVSKVEGSGEL-NMLRALSALPKDHpgSSYVCQMLDYFTHvgpnGTHTCLVLELVGPN-VAEFVDcyg 145
                 77899******************************9999987.999999999988889************999999*********9866.444444433 PP

                 HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEE CS
     Pkinase  91 rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLi 131
                     l+ + ak +akq+l+gl++l  ++i H Dl ++N+ i
  CCE29392.1 146 MYNRLPATLAKLFAKQTLQGLDFLATNNIGHGDLHTQNLAI 186
                 6677**********************************966 PP

  == domain 2  score: 45.3 bits;  conditional E-value: 7.8e-16
                 EEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH... CS
     Pkinase 129 iLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkekl 227
                 iL      +Ki+DFG a   +     ++        APE+  + + ++ vD+Ws+G++++el++g pp  + +++      ++q     +i ++++e  
  CCE29392.1 238 ILAAPCPSIKIIDFGEAFFSDDAP--STLRTPFVLQAPEIFFKDRLDPRVDLWSAGCLIFELVCGIPPIDAGSTRV----LVRQ-----MIATTSEELP 325
                 66666677********98888765..6666667788**********************************555555....5555.....2333444455 PP

                 HHHTTS.........................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 228 peasei.........................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 p+++                                            e +++ +  ll+ +p+ R ta+e l+++++
  CCE29392.1 326 PRWQAQwrdmqqgkveddgglnfltlkewlvhvyfkddqdaeftmeeIECVTKAIAGLLRLEPSLRATARESLSQEWF 403
                 555555566677799*****************************998788899************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0     2e-09   1.8e-05       3     134 ..      51     184 ..      49     190 .. 0.83
   2 !   17.9   0.0   1.7e-07    0.0015     139     236 ..     243     334 ..     234     341 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2e-09
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS..-BTTB--EEEEEE....SSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl..khpnivkllgvct....keepllivteyvkgGdLlkfLrk 94 
                  + +klG G+f++ + ++ +    k++  VavK++ ++ + + + ++l+ ++ + k       + ++l   t    ++ ++++v+e+v   ++ +f+  
   CCE29392.1  51 ILHKLGWGSFATTWAAKDQ----KDDRYVAVKIMVSKVEGSGELNMLRALSALPKDhpGSSYVCQMLDYFThvgpNGTHTCLVLELVG-PNVAEFVDC 143
                  6789*******99988877....8999**************9*********99775456889********966655556*******95.477888876 PP

                  T.CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGE CS
  Pkinase_Tyr  95 k.ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNv 134
                      ++l  +    fa q  +G+++L+++++ H dl ++N 
   CCE29392.1 144 YgMYNRLPATLAKLFAKQTLQGLDFLATNNIGHGDLHTQNL 184
                  623456666666679************************97 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.7e-07
                  TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHH CS
  Pkinase_Tyr 139 nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelye 236
                     +ki DfG a          + ++ ++p+   apE++++ ++  + D Ws G l++E+++ g  p+   +++ +++++ + +  e p  +++++ +
   CCE29392.1 243 CPSIKIIDFGEAFFS-----DDAPSTLRTPFVLQAPEIFFKDRLDPRVDLWSAGCLIFELVC-GIPPIDAGSTRVLVRQMIATTSEELPPRWQAQWRD 334
                  567888888866655.....23345678899999***************************9.99999999888888888877777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 3432.98
//
Query:       CCE29393.1  [L=473]
Description: uncharacterized protein CPUR_03086 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-22   80.2   0.8    1.9e-22   80.2   0.8    1.6  2  MCU       Mitochondrial calcium uniporter
  ------ inclusion threshold ------
      0.045   13.3   0.4      0.081   12.5   0.4    1.3  1  DUF1281   Protein of unknown function (DUF1281)
       0.29   10.1  14.0       0.43    9.5  14.0    1.2  1  Paf1      Paf1
        3.5    8.3  10.1       0.91   10.2   5.1    2.3  2  Pex14_N   Peroxisomal membrane anchor protein (Pex14p) conser


Domain annotation for each model (and alignments):
>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.8   4.2e-26   1.9e-22      60     175 ..     274     390 ..     253     391 .. 0.94
   2 ?   -3.4   0.4         2   8.8e+03      53      53 ..     435     435 ..     403     464 .. 0.52

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 4.2e-26
                 HHHHHHHHHH-SHHHHHHHHTCCCGGGCHHHHGGGHHHHHHHHTHHHHHHHT.TTS-S----HHHHHHHHHHHHHHHTTTHHHHGGCTTTCSSSSSSSS CS
         MCU  60 eekleelreelepleekkeeidekAerrtrrllwagLallavqlgilarLTw.weysWDvmEPvtYfvtygtamafyaYflltkqeysyedvkdrqflk 157
                 + +l+++++e++++ ++k+e+d  A++ + +l+ +g+a+la  +g++ + T+  e  WD +EPvtY ++++t+m +y++fl+ +++ sy+++++ ++++
  CCE29393.1 274 RMRLRRMSHEIDQMARVKRECDFLAHKGAYTLAKGGFAALAGWWGVVYYVTFhTEMGWDLVEPVTYLAGLATIMGGYLWFLFISRDLSYKAAMNMTVSR 372
                 567899**********************************************459******************************************** PP

                 STTT-SSS--SSHHHHHH CS
         MCU 158 kfhklakkrkfDvekYne 175
                 + + l+++r+fD +++++
  CCE29393.1 373 RRNALYQERGFDQQRWDQ 390
                 ***************987 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2
                 S CS
         MCU  53 l 53 
                 +
  CCE29393.1 435 K 435
                 1 PP

>> DUF1281  Protein of unknown function (DUF1281)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   1.8e-05     0.081      63     122 ..     364     426 ..     352     438 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
     DUF1281  63 veLteeaieeierlyeqsglaavkWeslteak...realaallerksaDWlglvtledesdve 122
                 ++++ + +++ ++ly++ g ++++W+++ + +   r+ ++   ++ s+DW  + +l  e   +
  CCE29393.1 364 AAMNMTVSRRRNALYQERGFDQQRWDQVVHEAnalRREIKIAAQEYSVDWDEMKDLGGEEVKQ 426
                 5666677788899**************98654223788999999999***9998877665554 PP

>> Paf1  Paf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  14.0   9.6e-05      0.43     316     412 ..     367     468 ..     358     473 .] 0.67

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 9.6e-05
        Paf1 316 rveLrkrRkk.......eeeeskkdklvvklrelneeelkarekresefdpleeekeeeeeeeeeeeeekseeeeekeeekeeaeeeseaeseeessde 407
                 +++ ++rR         +  ++++d++v + ++l +e + a ++++ + d +++ + ee ++  eee++++++ +++e++++++++e+e++++  +s++
  CCE29393.1 367 NMTVSRRRNAlyqergfD--QQRWDQVVHEANALRREIKIAAQEYSVDWDEMKDLGGEEVKQALEEERNSKKNGDKEEDKEDQKQDEKESPGKHRDSES 463
                 789999999999988543..48***********************999899999988888888888888333333333333333333333333333333 PP

        Paf1 408 eeeea 412
                 ++e++
  CCE29393.1 464 AQESE 468
                 33322 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2      0.27   1.2e+03      76      99 ..      76      99 ..      48     164 .. 0.55
   2 ?   10.2   5.1    0.0002      0.91      16      84 ..     401     465 ..     394     473 .] 0.55

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.27
     Pex14_N 76 tpqpqaasqtsqsspspsppaqqq 99
                +p + ++s++  +s+sp+p+++++
  CCE29393.1 76 RPWHRESSNALPESTSPDPAPKSA 99
                222222222222222222211111 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0002
     Pex14_N  16 sVrsaplekkvaFLesKGLtqeEIeeaLkraereeeasesavaassaseqaqeesasssatpqpqaasq 84 
                 +++ a+ e+ v++ e K L  eE+++aL++ er+++++ +++++++  +q+q+e++s+ +++ +++a q
  CCE29393.1 401 EIKIAAQEYSVDWDEMKDLGGEEVKQALEE-ERNSKKNGDKEEDKE--DQKQDEKESPGKHRDSESA-Q 465
                 5777888888888899**************.555555543211111..1112222222211111111.1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1352  (0.0754086); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 3108.67
//
Query:       CCE29394.1  [L=876]
Description: probable MVD1-mevalonate pyrophosphate decarboxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-93  312.6   5.0    1.8e-93  312.6   5.0    2.2  2  DUF647          Vitamin B6 photo-protection and homoeostasis
    3.2e-62  209.6   0.1    5.1e-62  208.9   0.1    1.3  1  MDD_C           Mevalonate 5-diphosphate decarboxylase C-term
    4.1e-07   30.1   1.4    4.1e-07   30.1   1.4    3.0  3  GHMP_kinases_N  GHMP kinases N terminal domain


Domain annotation for each model (and alignments):
>> DUF647  Vitamin B6 photo-protection and homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2     0.087   5.2e+02      80     151 ..     228     300 ..     161     310 .. 0.74
   2 !  312.6   5.0     3e-97   1.8e-93       4     240 ..     485     721 ..     482     722 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.087
      DUF647  80 grlatilfasrlgtaldsecKryrlvadvln.dlamllellspalpslfllvlslasvlkslcgvaagatkas 151
                 +r+++i+ a+    +   ++K +  +a+v + +  ++  +++ ++p++f +  +   +++++  + a a ka 
  CCE29394.1 228 QRISQIVPANMKTMEEAVHAKDFAKFAEVTMrESNSFHACCADTYPPIFYMNDVSRAAIRAVESINAAAGKAI 300
                 5788888888888888888899988888865256677778888999988888888888888877777777765 PP

  == domain 2  score: 312.6 bits;  conditional E-value: 3e-97
      DUF647   4 akslaqrvldvfLPagYPdsVtedYleYqiydslqafassiasvlatqavLegvGVGdasasptaAlllwvlkDglgrlatilfasrlgtaldsecKry 102
                  +++++++ d+fLP gYP+sV++dY++Yq+ydslqaf+s+i+s+la++a+Leg+GVGda++s+t All ++lkD ++r+ati fa+r+g ++++++Kry
  CCE29394.1 485 LREWKKALYDAFLPVGYPHSVSRDYIAYQTYDSLQAFFSTITSLLASRALLEGLGVGDANSSATFALLITILKDAMSRIATIAFAHRFGLRIEPDAKRY 583
                 5789999******************************************************************************************** PP

      DUF647 103 rlvadvlndlamllellspalp.slfllvlslasvlkslcgvaagatkaslsahfArkgnlgevnAKdssqetvvsllGlllgivvvslisskaaltwl 200
                 r++ad++nd+a++lel+sp+l  s  l+vl+++++l++lcgvaaga+ka+ls hfA+++nl+e+nAK++sqet+v l+Gll+g++vv++++++a+ ++ 
  CCE29394.1 584 RFLADIFNDTAFFLELCSPYLAsSGKLAVLAVGEALRALCGVAAGASKAALSVHFAKHDNLAELNAKEASQETAVGLVGLLVGTMVVKVVQDPAS-VVY 681
                 *********************889***********************************************************************.899 PP

      DUF647 201 llilllalhllanykavravklrtLNrqRanivlseflee 240
                 l+i+l++ hl++ny  vr+v+++tLNrqRa+i+++e++ +
  CCE29394.1 682 LMIVLVLAHLWMNYLGVRSVCMTTLNRQRATILFQEYMMT 721
                 9************************************987 PP

>> MDD_C  Mevalonate 5-diphosphate decarboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.9   0.1   8.5e-66   5.1e-62       1     184 [.     198     374 ..     198     377 .. 0.91

  Alignments for each domain:
  == domain 1  score: 208.9 bits;  conditional E-value: 8.5e-66
       MDD_C   1 vlilvvsdekkkvsStsGmqrsvetSeLlkhrakevvperieelekAikekdFetfaeitmkdSnqlhavcldtyPpifYlndtSraiielvhelNeaa 99 
                 +lilv s++kk vsStsGmq++v+tS L+++r++++vp+ ++++e+A+++kdF++fae+tm++Sn++ha+c+dtyPpifY+nd+Sra i+ v+++N+aa
  CCE29394.1 198 ALILVASAAKKGVSSTSGMQQTVATSGLFQQRISQIVPANMKTMEEAVHAKDFAKFAEVTMRESNSFHACCADTYPPIFYMNDVSRAAIRAVESINAAA 296
                 69************************************************************************************************* PP

       MDD_C 100 gkikvAYtFDAGpNavlyleekdveellsllkklfppesdaeefvkgakveeaaelseelkaslalkeskgavkriiltkvgdGp 184
                 gk  +AYtFDAGpN+v+y++++d +++l +++ ++   s ++e   +  v++  +l     ++  ++  k+ v+r+i+t+vg+Gp
  CCE29394.1 297 GKAIAAYTFDAGPNCVVYYLQEDESAVLGAFADVLRGISGWKEGSAQ--VKSGVKL-----EDGITSILKDGVSRVIMTSVGEGP 374
                 ************************************97776665322..2222223.....334556789**************9 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   1.4   6.9e-11   4.1e-07       2      66 .]     110     167 ..     109     167 .. 0.75
   2 ?   -3.1   0.0       1.7   9.9e+03      51      65 ..     210     224 ..     199     224 .. 0.74
   3 ?   -1.8   1.6      0.63   3.8e+03      20      36 ..     611     627 ..     604     658 .. 0.64

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 6.9e-11
                     EEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N   2 ivikseiPvgaGLGSSAAlavalvaAllallglsleeaklaleaerlaqggngsggDvaasvyGg 66 
                     +v+++++P++aGL+SSAA  +alv A+++l++l+           +l   ++ + g ++ s++Gg
      CCE29394.1 110 LVSENNFPTAAGLASSAAGFAALVQAIANLYELP-------DSPSELSLIARQGSGSACRSLFGG 167
                     7899***************************544.......333333333666666667766665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
                     HHHHHSHHHHHHHHS CS
  GHMP_kinases_N  51 ggngsggDvaasvyG 65 
                     + ++sg+ +++++ G
      CCE29394.1 210 VSSTSGMQQTVATSG 224
                     466999999999876 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.63
                     HHHHHHHHHHHHTTEHH CS
  GHMP_kinases_N  20 lavalvaAllallglsl 36 
                     +++a+  Al al+g+  
      CCE29394.1 611 AVLAVGEALRALCGVAA 627
                     35688889999998653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 6169.88
//
Query:       CCE29395.1  [L=281]
Description: related to CYT2-holocytochrome-c1 synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-39  135.6  18.1      1e-36  127.1   3.2    2.7  2  Cyto_heme_lyase  Cytochrome c/c1 heme lyase
  ------ inclusion threshold ------
       0.43    9.6   1.5       0.61    9.1   1.5    1.1  1  Tcp11            T-complex protein 11


Domain annotation for each model (and alignments):
>> Cyto_heme_lyase  Cytochrome c/c1 heme lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   7.0   6.7e-06      0.06      24     117 ..       4      98 ..       1     107 [. 0.60
   2 !  127.1   3.2   1.1e-40     1e-36     113     289 ..     128     274 ..     116     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.7e-06
  Cyto_heme_lyase  24 sspseCPmhkkkkskkkkaaseaaakekkkesasacpvkeee.....eseeeeeksalsklnplnympselsqerapeqkvdLpteReissiPk 112
                      + +++CP+++++   +++  ++a+a++++++++ +cpv++++      ++++ ++s +s l      ps  + +  ++   +L t+R is+iP+
       CCE29395.1   4 KDSPACPVDSQT---RDAWLAQARAAASSESNTPSCPVNHDSsptnpPKTKTWTQSLTSYLPWSSPSPS-SAPKPPTRAPSALDTSRVISTIPR 93 
                      56899****433...33444445555666667779***7766554433333334444444444444443.233335567899************ PP

  Cyto_heme_lyase 113 gdeeg 117
                      ++ ++
       CCE29395.1  94 STPAT 98 
                      97655 PP

  == domain 2  score: 127.1 bits;  conditional E-value: 1.1e-40
  Cyto_heme_lyase 113 g.deeglWeYPspqqmynAmlrKGyedipedavesmvavHnflnEgaWeeileWEkkfakglakgwkkckrgeekveeelekeeePkLlrFqGr 205
                      g d +g+W YPs++++++Am rKGy+     +++ +v +Hn++nE aW+ei+eWE+ +  g            +++       ++PkL  F  +
       CCE29395.1 128 GvDPSGKWVYPSEKMFFEAMKRKGYD-ARVADMKTVVPIHNAVNERAWREIVEWEEPYLAG------------TSC-------KTPKLESFANK 201
                      557789*******************5.67789***************************92............233.......47********* PP

  Cyto_heme_lyase 206 pkelsPkarllqllgklfPskfstelPFDRHDWlvlRkteeeekkevrYviDyYsgpdeetGe..pvfllDvRPaldsltaaadRl 289
                       + ++P ar+ ++lg+        + PFDRHDW+++R+       ++ YviD+Y+g +++ G+  p f+l vRP l++ + ++ R 
       CCE29395.1 202 NDRMTPTARFNTILGY--------TAPFDRHDWVIDRC-----GTRIDYVIDFYAGRPDPAGKagPSFYLHVRPKLNTWEGVKMRA 274
                      ***************9........789***********.....4689*************9964489**********999997776 PP

>> Tcp11  T-complex protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.5   6.8e-05      0.61     189     250 ..      14      73 ..       4      91 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 6.8e-05
       Tcp11 189 estrkWlrkarekleaesserdpesssssssassspspskvliqglldllsssadpsseee.f 250
                 ++  +Wl +ar+++ ++ s++ + +++++ss++++p+ +k+ +q+l++ l +s+ ps++++  
  CCE29395.1  14 QTRDAWLAQARAAA-SSESNTPSCPVNHDSSPTNPPK-TKTWTQSLTSYLPWSS-PSPSSApK 73 
                 55567999996444.4445566667778888888888.**************85.65555442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2125.51
//
Query:       CCE29396.1  [L=525]
Description: probable protein BTN1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.6e-160  533.9   5.4     3e-160  533.6   5.4    1.0  1  CLN3      CLN3 protein
    3.2e-07   29.6  21.2    1.3e-06   27.6   4.1    2.2  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> CLN3  CLN3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  533.6   5.4  3.3e-164    3e-160       2     397 ..     105     509 ..     104     510 .. 0.90

  Alignments for each domain:
  == domain 1  score: 533.6 bits;  conditional E-value: 3.3e-164
        CLN3   2 aFwllGLiNNvlyvviLsAAlDlvgkstpkgvvlladilPsllikllapffihkvpysvrvlllvllsalgmllvalsks...lavkllGvvlaslssG 97 
                 aFwl+GLiNNvlyv+iLsAA+Dlvg+s+pkg+vl+ad+lPs+++kl+ap+fih+vpy vrvl++++ls++gmllval+++   +avk++GvvlaslssG
  CCE29396.1 105 AFWLFGLINNVLYVIILSAAQDLVGSSIPKGIVLMADVLPSFVTKLVAPYFIHRVPYPVRVLVFIALSVMGMLLVALTPAsqsVAVKMAGVVLASLSSG 203
                 8****************************************************************************988778**************** PP

        CLN3  98 lGEltfLqlthyykksslaawssGTGaaGlvGallyalltsllglsvkatllvslvlPlllllsyflllekkkskkeakaeeee.eeyekleeeeeeee 195
                  GEl+fL+l+hyy++ sl +w+sGTGaaGlvGa+ly++lt+++g+sv+ +ll+s++lP+++++s+f++l++++ +  +++  e+    e++eee ee e
  CCE29396.1 204 GGELSFLGLSHYYGHVSLVGWGSGTGAAGLVGAGLYVVLTDWWGFSVRDSLLFSACLPVVMFVSFFFVLPREPLQVMRQKDYETlPGVEAQEEEVEE-E 301
                 ************************************************************************9988876655553333333333222.2 PP

        CLN3 196 ......eeseeeelleseaasa.aeeeeeeesselkkslkeklklvksLllkymlPLllVYlaeYliNqgvaptllfpleekpfkslrdqYrvyqvlYq 287
                       +  + ++ll+ + ++  +  ++++++  + +sl+++l+++++L+++ym PLllVY+aeY+iNqgv+ptllfp+e++pf +lr++Y++y++lYq
  CCE29396.1 302 gddersQGVAGSALLAPSLSTGnSVFSSQHHQLGAPRSLESNLRRARALFVPYMAPLLLVYVAEYTINQGVSPTLLFPVESSPFDELRAFYPFYGFLYQ 400
                 34444322333334443333330333444445788899************************************************************* PP

        CLN3 288 lgvfisRssvsllrirklyllsllQvlnlvllllealyelflpsiylvfllilyeGllGGaaYvntfaeiseevekeerefslgavsvsDslGillagl 386
                 lgvfisRss+++lrir+ly++s+lQ+ n++ll+l++l+ +f+ps+ylvf++i++eGllGGa+Yvn+faei+e+v+++erefsl+a++vsDs+Gi++a+l
  CCE29396.1 401 LGVFISRSSTPFLRIRRLYVPSVLQMGNAALLILQSLF-FFMPSVYLVFAVIFWEGLLGGAVYVNCFAEIMEKVPEDEREFSLSATTVSDSAGICIAAL 498
                 *************************************9.66********************************************************** PP

        CLN3 387 lalplenalCk 397
                 +++ le+ lC 
  CCE29396.1 499 VSILLEPGLCG 509
                 **********6 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   9.0   0.00019       1.7     202     316 ..      93     204 ..      65     218 .. 0.76
   2 !   27.6   4.1   1.4e-10   1.3e-06     126     352 ..     224     496 ..     217     497 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00019
       MFS_1 202 allkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssa 300
                 +ll++p    +l+a+ lf+++++ l++ + + +q+  g s  +  g++l++  l +++ +l+a ++++r++   r l++++l +++ l++al+++++s 
  CCE29396.1  93 SLLRHPDTK-VLTAFWLFGLINNVLYVIILSAAQDLVGSS--IPKGIVLMADVLPSFVTKLVAPYFIHRVPYPVRVLVFIALSVMGMLLVALTPASQSV 188
                 445555444.899999999999997777777789999999..67777777777777777**********998889999999999999999999988888 PP

       MFS_1 301 vllllvlvliGfglgf 316
                 ++ ++++vl+++ +g 
  CCE29396.1 189 AVKMAGVVLASLSSGG 204
                 8877777776664444 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 1.4e-10
       MFS_1 126 lsagfslGailgpllggllasslg..Wravfyilaivsllafvlfllllpeepperkrkspkeee.................................. 188
                 +++g++++ ++g++l  +l++++g   r + ++ a + +++fv f+++lp+ep +  r+++ e +                                  
  CCE29396.1 224 WGSGTGAAGLVGAGLYVVLTDWWGfsVRDSLLFSACLPVVMFVSFFFVLPREPLQVMRQKDYETLpgveaqeeeveeegddersqgvagsallapslst 322
                 78999999999****99*******5555569999999999999888999888888888888888899999999999999999**999999999999777 PP

       MFS_1 189 ..........kgtgpaplvpawkallkdpvlw.illialllfffgfsg......lltllplylqevlglsglllagllla.llalvgailallagrls. 268
                           +  +p++l +    l++ + l+  +++ lll+ ++ ++       + l+p+   e   ++ l   + +++ l++l+++i++  + +l  
  CCE29396.1 323 gnsvfssqhhQLGAPRSLES---NLRRARALFvPYMAPLLLVYVAEYTinqgvsPTLLFPV---ESSPFDELRAFYPFYGfLYQLGVFISRSSTPFLRi 415
                 77777766554444444444...66666666454555555554444442222323333333...33333333333333440444444444666666655 PP

       MFS_1 269 drlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +rl     l ++ ++ll++  ++++++      l+ +v++  G+ +g v++  +a +++ +p++e+ + ++++++  s+g++++
  CCE29396.1 416 RRLYVPSVLQMGNAALLILQSLFFFMPSV---YLVFAVIFWEGLLGGAVYVNCFAEIMEKVPEDEREFSLSATTVSDSAGICIA 496
                 55433344444444444444444444444...2333355557779999***************************999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3670.64
//
Query:       CCE29397.1  [L=361]
Description: uncharacterized protein CPUR_03090 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-15   57.1   0.0    3.7e-14   53.1   0.0    2.4  1  Glyco_transf_25  Glycosyltransferase family 25 (LPS biosynthe


Domain annotation for each model (and alignments):
>> Glyco_transf_25  Glycosyltransferase family 25 (LPS biosynthesis protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   2.1e-18   3.7e-14       2     191 ..      62     273 ..      61     285 .. 0.75

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 2.1e-18
  Glyco_transf_25   2 ikiyvisLkesqeRrehikkeleklkiefqffdAidgkekeeellqkllnsklakkyvgkeLtlgelGCylSHyllWekcvelnleyiiIlEDD 95 
                       k++ isL ++++R++ ++   ++ +++ +f  + +g + +           +ak + +++L +g+lGC  SH  +W++++++n++ +i+ EDD
       CCE29397.1  62 EKVFYISLPNRSDRQDVMSMLASSTNVSLTFQPGASGADIPA----------KAKPAGSEGLRDGQLGCWRSHADVWKRIIDENIQTAIVVEDD 145
                      58999*****************************99999999..........445555679********************************* PP

  Glyco_transf_25  96 vilseefkealedllkeikeleflrlgel.kktrfeekdkellkletfledsksfkkkki...............................aey 157
                      +  + + +++ e l +++k+ +  ++    ++ ++ +   e   l      ++  k+k+                                +e 
       CCE29397.1 146 ADWDMDIHNIFERLSQHMKKTKLGKHTRTpYELKHAPYGLEWDLLYIGSCWDIPRKEKPHkhetyedpsapnsnemsgayaqqlrdwgisvNED 239
                      **********999999998766665522113333333333333333333333333333335566788888888888998888888888765434 PP

  Glyco_transf_25 158 ekrafyllssevagtaGYlltpkaAkkllkalke 191
                       + ++   s + ++t GY +t  +A+kll  + +
       CCE29397.1 240 THIRALAPSWYSVCTIGYAVTLHGARKLLYTVGN 273
                      44447888899999*************9977655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2581.33
//
Query:       CCE29398.1  [L=413]
Description: uncharacterized protein CPUR_03091 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-09   36.2   2.0    1.1e-08   35.2   2.0    1.4  1  Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
    5.8e-06   26.4   0.0    9.2e-06   25.8   0.0    1.3  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase
  ------ inclusion threshold ------
      0.015   14.9   0.2      0.025   14.1   0.2    1.4  1  DUF273           Protein of unknown function, DUF273


Domain annotation for each model (and alignments):
>> Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   2.0   1.8e-12   1.1e-08      32     166 ..     171     287 ..     165     311 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.8e-12
  Glyco_transf_34  32 NrvdYaekhgyeifykkvsallaeemnsvWaklpairaamkkyPeaewiWwlDqdAlimnmdlsleehvlkperLeelllkntpvvplrryket 125
                      N   Ya++hgy+ +y  v+ +++++ +++W+k  +i +++k++       +lD+dA++ n dl   e ++               + ++ y+++
       CCE29398.1 171 NHYVYARIHGYKYYY--VNIVEPQDRRASWKKPSVISKILKEHDV---CIYLDSDAIFRNLDLP-FEWLM---------------NYWKLYPDN 243
                      7788***********..666777779*****************55...5689************.44455...............9******** PP

  Glyco_transf_34 126 nlvedgedvlviisqdwng...lnagsflirnsewsklllDlwa 166
                      n +  +ed  +  ++d+ g   ln+g ++ +n+  + +++D w 
       CCE29398.1 244 NAMALAEDPAFNYNKDKFGklyLNTGFIVAQNNPTTYKIMDDWD 287
                      ***************99988889******************996 PP

>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.5e-09   9.2e-06      50     172 ..     195     336 ..     187     359 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.5e-09
  Nucleotid_trans  50 kmswrkvrlllellklGynvllsDvDvvW..lrnpfpll.ky.....edaDvlvssDsldgttadelknli.NsGfffvrateatkallkkwae 134
                      + sw+k++++ ++lk     +++D D+++  l  pf+ l +y      ++ + ++ D   + + d++++l+ N+Gf++++++++t++ +++w +
       CCE29398.1 195 RASWKKPSVISKILKEHDVCIYLDSDAIFrnLDLPFEWLmNYwklypDNNAMALAEDPAFNYNKDKFGKLYlNTGFIVAQNNPTTYKIMDDWDK 288
                      679**************************3335688877733555644455555669998888999998889********************99 PP

  Nucleotid_trans 135 elasesglw...............DqdvfnlllregaakesglkvrvLdtalf 172
                        +++ + +               Dq  f   +r+     +++++r L+ +++
       CCE29398.1 289 CPNDNGP-YpgcegfrrswpgqptDQGGFGTYVRYN----YTAHIRELPCTEA 336
                      8888733.4577888888888888888888888885....4666766666665 PP

>> DUF273  Protein of unknown function, DUF273
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   4.2e-06     0.025       4      54 ..     175     223 ..     173     288 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.2e-06
      DUF273   4 yakihgyefilaedtdyeCeqkdkffrrhCvvakilpkydavlfldadigv 54 
                 ya+ihgy++  ++    e +++   +++  v++kil+++d+ ++ld+d   
  CCE29398.1 175 YARIHGYKYYYVNIV--EPQDRRASWKKPSVISKILKEHDVCIYLDSDAIF 223
                 9********998755..56788899**********************9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2934.91
//
Query:       CCE29399.1  [L=124]
Description: uncharacterized protein CPUR_03092 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 979.15
//
Query:       CCE29400.1  [L=1461]
Description: uncharacterized protein CPUR_03093 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.3e-64  212.0  51.3    5.4e-18   65.0   7.2    4.5  4  WSC          WSC domain
    9.6e-06   25.9   8.0       0.19   12.3   0.2    5.2  4  PQQ_3        PQQ-like domain
  ------ inclusion threshold ------
      0.023   14.3   0.1        0.2   11.2   0.0    2.5  2  PQQ_2        PQQ-like domain
      0.044   13.7   1.3       0.17   11.9   1.3    2.0  1  Prok-RING_1  Prokaryotic RING finger family 1
       0.43   10.6   0.0       0.43   10.6   0.0    3.9  4  PQQ          PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   7.2   1.5e-21   5.4e-18       1      82 []     927    1005 ..     927    1005 .. 0.95
   2 !   60.7   8.0   3.1e-20   1.1e-16       2      82 .]    1050    1128 ..    1049    1128 .. 0.92
   3 !   60.7   7.0   3.2e-20   1.1e-16       1      81 [.    1196    1274 ..    1196    1275 .. 0.91
   4 !   44.2   5.2   4.7e-15   1.7e-11       1      82 []    1359    1445 ..    1359    1445 .. 0.87

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 1.5e-21
         WSC    1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82  
                  ylGCy+d+ +++r+l+++    +tmt  +C+++C akgy+++g+e+ +eC+ gn++p  +v+++  +Cn+ C+Gd +q+CGg
  CCE29400.1  927 YLGCYKDN-TPNRQLSSQILAADTMTSAACIQACFAKGYTFCGTEYHRECWAGNTIPLIKVPDA--NCNYYCAGDLKQICGG 1005
                  9*******.6888889999999*************************************99994..5**************8 PP

  == domain 2  score: 60.7 bits;  conditional E-value: 3.1e-20
         WSC    2 lGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82  
                  +GCyt+   ++    p+ +  ++ t+ +C+++Ck   y yag+e+g+eC+Cgn l+++av+a+ ++C+++C+ +s+++CGg
  CCE29400.1 1050 IGCYTEA--TTGRALPNGKGVEKKTVRDCVEACKGGRYLYAGIEYGGECWCGNALSPGAVPAPMTDCKMTCNDNSTELCGG 1128
                  6****88..5566666667788899*******************************************************8 PP

  == domain 3  score: 60.7 bits;  conditional E-value: 3.2e-20
         WSC    1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassss.CnasCsGdssqtCG 81  
                  y+GC+t+  ++  +l     ++++mt + Ca+ C   g +y+g+e+g+eCyCg  l++++vka+++  C+  C+G+++q+CG
  CCE29400.1 1196 YQGCWTEA-TRGHALRDRIRTNDSMTLDLCAEICD--GLTYFGVEYGRECYCGRALQPGSVKAANQAdCKFLCPGNKTQYCG 1274
                  99****99.566666667788999**********9..***********************99988888*************9 PP

  == domain 4  score: 44.2 bits;  conditional E-value: 4.7e-15
         WSC    1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassss........CnasCsGdssqtCGg 82  
                  yl+C+ +  ++ rll ++  ++ +mt++ C ++C   +y+yag+e+g+eC+Cgn+++ + +   ++         C   C G+ +++CGg
  CCE29400.1 1359 YLACVAEP-SRGRLLATQILNHVNMTIHMCLQTCW--EYNYAGVEYGRECWCGNTVNYGGNGGLTAPgrnvsnaeCGFLCLGNGTEFCGG 1445
                  899**988.68888888899999***********9..9*****************99887655444445677888**************8 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   7.5e-05      0.27      16      40 .]      80     105 ..      65     105 .. 0.72
   2 ?    1.8   0.7       0.1   3.7e+02       4      32 ..     252     292 ..     250     296 .. 0.58
   3 !   12.3   0.2   5.2e-05      0.19      15      36 ..     514     535 ..     504     537 .. 0.80
   4 ?   -2.8   0.0       2.8     1e+04      10      23 ..    1342    1354 ..    1338    1371 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.5e-05
       PQQ_3  16 spavdg.glvyvgtgdGtlyAlDaet 40 
                 +p  ++   vyv+t+++++y lDa+t
  CCE29400.1  80 TPSGSDkQFVYVATTQNNVYKLDAKT 105
                 333334247***************98 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
       PQQ_3   4 lWsv.......ql.pgpvnssp.....avdg.glvyvgtgdGt 32 
                 +W++       ++ +g v+  +     a d+ g v+ +tg+G 
  CCE29400.1 252 KWATegkgvpnNVaGGGVW--MsgggiASDDkGSVFLATGNGY 292
                 6777555333322123444..0336656666678******996 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 5.2e-05
       PQQ_3  15 sspavdgglvyvgtgdGtlyAl 36 
                 + p++++g+vyvgt +G ly +
  CCE29400.1 514 ARPVFGNGIVYVGTNQGYLYGF 535
                 679*****************87 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 2.8
       PQQ_3   10 pgpvnsspavdggl 23  
                  p+p+  +p++++g 
  CCE29400.1 1342 PAPA-PGPVISDGN 1354
                  5555.468999985 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.7e-05       0.2      35      71 ..      85     121 ..      21     141 .. 0.83
   2 ?   -0.8   0.0      0.25   9.1e+02      25      50 ..     509     534 ..     463     537 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.7e-05
       PQQ_2  35 sggtlfvatgggrlvaldaatGkvlWettlegpvvga 71 
                 +++ ++vat+ +++++lda+tG+++ +++l  p+++a
  CCE29400.1  85 DKQFVYVATTQNNVYKLDAKTGQIVTSRSLHIPFLTA 121
                 6677899999999999999999999999888777776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.25
       PQQ_2  25 lgggvsravlsggtlfvatgggrlva 50 
                   + ++r+v ++g ++v+t  g l++
  CCE29400.1 509 GVNKFARPVFGNGIVYVGTNQGYLYG 534
                 55556677777777777777776665 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.3   4.6e-05      0.17      26      36 ..     967     977 ..     964     980 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.6e-05
  Prok-RING_1  26 CgtpyHraCye 36 
                  Cgt yHr+C+ 
   CCE29400.1 967 CGTEYHRECWA 977
                  **********6 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00012      0.43       3      25 ..      89     111 ..      89     114 .. 0.88
   2 ?   -2.5   0.1       1.7   6.2e+03      10      19 ..     171     180 ..     169     180 .. 0.85
   3 ?   -2.7   0.1         2     7e+03       5      19 ..     369     383 ..     367     385 .. 0.81
   4 ?    1.2   0.4      0.11     4e+02       1      15 [.     521     535 ..     521     537 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00012
                 EEEEETTSEEEEEETTTCCEEEE CS
         PQQ   3 vylgsadGylyAlDadTGkvlWr 25 
                 vy+++  +++y lDa+TG+++ +
  CCE29400.1  89 VYVATTQNNVYKLDAKTGQIVTS 111
                 79998888***********9875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.7
                 SEEEEEETTT CS
         PQQ  10 GylyAlDadT 19 
                 +y+ Al++++
  CCE29400.1 171 YYVHALNVND 180
                 79*****986 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2
                 EEETTSEEEEEETTT CS
         PQQ   5 lgsadGylyAlDadT 19 
                 ++ + G+ y l++d+
  CCE29400.1 369 VTGKSGKTYFLNLDD 383
                 557899******997 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.11
                 TEEEEEETTSEEEEE CS
         PQQ   1 gvvylgsadGylyAl 15 
                 g vy+g++ Gyly +
  CCE29400.1 521 GIVYVGTNQGYLYGF 535
                 689**********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:00.41
# Mc/sec: 10603.73
//
Query:       CCE29401.1  [L=763]
Description: uncharacterized protein CPUR_03094 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00026   20.5   0.5    0.00054   19.4   0.0    1.7  2  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.052   12.3   0.4      0.081   11.7   0.4    1.2  1  Tht1            Tht1-like nuclear fusion protein
       0.21   12.6   9.8       0.13   13.3   2.9    2.9  2  DUF5320         Family of unknown function (DUF5320)
        1.9    8.5   9.5        5.3    7.1   0.4    2.6  2  Phasin          Poly(hydroxyalcanoate) granule associated pro
          5    7.4   5.6         64    3.9   0.2    3.4  3  DUF948          Bacterial protein of unknown function (DUF948
        5.3    4.8   8.9        8.5    4.2   8.9    1.2  1  V_ATPase_I      V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.8       2.3   6.8e+03     218     231 ..      90     103 ..      63     123 .. 0.44
   2 !   19.4   0.0   1.8e-07   0.00054      10     153 ..     566     714 ..     564     725 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.3
                 HHCTSHH...HHHT CS
     Pkinase 218 kilgetkeklpeas 231
                 k+l+++++ l++++
  CCE29401.1  90 KLLKQQTKMLKQQT 103
                 22222111222111 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.8e-07
                 ESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.....HHSS--HHHHHH CS
     Pkinase  10 GsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle.....rkgslseeeakk 102
                 Gs+G  +k++  + g ++  K  ++e+a++ ++  ++ + +k ++ ++ p  +  ++  + ++++++ +          +l+      k+ l ++    
  CCE29401.1 566 GSMGALFKVTLLAYGYTFISKGTRVEHAESLQHeAEIYQRLKPIQGVHVPVFLGAIDLQTMDKNYWIYFGTYVVHM--IFLSwgghpLKRDLMNAVKIP 662
                 6677777777777777777777777777776664555555555555556666666666666666666665444332..222222333233344444456 PP

                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCS CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesssk 153
                 ++++  ++l+ lH++g++ rD+  +NiL + e + ++++ F+ a+ + +s++
  CCE29401.1 663 WVERAEQALQALHHQGVLQRDVEWSNILGNaEVNGVMLINFDCACVIGKSTP 714
                 7888899***********************55555**********9988765 PP

>> Tht1  Tht1-like nuclear fusion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   2.7e-05     0.081     312     421 ..      77     185 ..      60     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.7e-05
        Tht1 312 sedslkesvssnidlvnsgfqeledlsiqlkkelqslkkllsesqnleaeellqwksdflsvlkdslkvlqqlrslidivekfknvllkelsaiissfa 410
                  +ds  +  ++  +l+    + l++ +  l ++ q +k+ l e   l+ e +  w++   s l  +l   q+ +s  +i+ k++   lke+++ +s   
  CCE29401.1  77 PKDSATQEAQEQTKLLKQQTKMLKQQTKMLEQQTQEIKRMLLEPTTLD-EYIKEWHASTFSKLTIHLDGPQRDPSTAEILGKWQPEALKEWTTFLSEQR 174
                 47999999*************************************775.7899**9999999999********************************99 PP

        Tht1 411 ligeelfatls 421
                 li ++++  ls
  CCE29401.1 175 LILNQVYDVLS 185
                 99999888876 PP

>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.6      0.13   3.8e+02      70      96 ..       2      28 ..       1      30 [. 0.89
   2 ?   13.3   2.9   4.5e-05      0.13      42      98 ..      56     112 ..      35     117 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.13
     DUF5320 70 skeeekelLeeqaeaLeeeleaikkrl 96
                ++++++++L+++ + Le+ +++ik ++
  CCE29401.1  2 DQQNDIDALRQKVQELERHIQEIKLQI 28
                6789999****************9887 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 4.5e-05
     DUF5320  42 ggrglgrgfgrrrraggarlaaaetaeaskeeekelLeeqaeaLeeeleaikkrlke 98 
                 gg  + r    +      + + + +a ++++e+++lL++q ++L+++ + ++++ +e
  CCE29401.1  56 GGHKRERQTDKKHEKALHQIQPKDSATQEAQEQTKLLKQQTKMLKQQTKMLEQQTQE 112
                 444455555554444444444566777778888888888888888888888888776 PP

>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.4    0.0018       5.3     103     124 ..       3      24 ..       1      26 [. 0.90
   2 ?    4.6   3.2      0.01        30      35      86 ..      48     101 ..      42     122 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0018
      Phasin 103 sredveaLsarvdeLtkelekl 124
                 +++d++aL+++v+eL+++++++
  CCE29401.1   3 QQNDIDALRQKVQELERHIQEI 24 
                 799***************9986 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.01
      Phasin  35 klfeaLvkeGeklekktkkvaeekleevr..esvkskveevkekaeeqwdklek 86 
                 +++++L + G+k e++t k+ e++l++++  +s++++++e ++ +++q++ l +
  CCE29401.1  48 RIYNKLHRGGHKRERQTDKKHEKALHQIQpkDSATQEAQEQTKLLKQQTKMLKQ 101
                 78999***********************98755656665555555555544432 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.022        64      24      52 ..      10      38 ..       6      55 .. 0.79
   2 ?    2.4   1.3     0.064   1.9e+02      30      58 ..      84     112 ..      66     129 .. 0.62
   3 ?    0.3   0.0      0.28   8.4e+02      33      49 ..     195     211 ..     192     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.022
      DUF948 24 lkktldeaaatieelekqvdpilkevedl 52
                l++ ++e++++i+e++ q++p  ++++++
  CCE29401.1 10 LRQKVQELERHIQEIKLQIQPRKRQTKTM 38
                78889999999999999999999999887 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.064
      DUF948  30 eaaatieelekqvdpilkevedllakvne 58 
                 ea+++ + l++q++ + ++++ l ++++e
  CCE29401.1  84 EAQEQTKLLKQQTKMLKQQTKMLEQQTQE 112
                 55555555555555555555544444444 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.28
      DUF948  33 atieelekqvdpilkev 49 
                  ti+++++ v+pi++e 
  CCE29401.1 195 VTIRDIGDSVGPITDEW 211
                 589***********995 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   8.9    0.0028       8.5      30     116 ..      12     113 ..       2     167 .. 0.54

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0028
  V_ATPase_I  30 rrcdemerklrfleeeieklekavikeeea................eesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavleka 112
                 ++++e+er+++ ++ +i+  +k ++k+++                  +++e++++k+ ++  ++++ +++  +e +e+++ lk++++ l++++++le+ 
  CCE29401.1  12 QKVQELERHIQEIKLQIQP-RKRQTKTMKLrdkaikrriynklhrgGHKRERQTDKKHEKALHQIQPKDSATQEAQEQTKLLKQQTKMLKQQTKMLEQQ 109
                 3556666666666666655.2222222222345666666444444433333333333333333344444444444444444444444444433333333 PP

  V_ATPase_I 113 kefl 116
                 ++ +
  CCE29401.1 110 TQEI 113
                 3222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2459  (0.137152); expected 358.6 (0.02)
Passed bias filter:                      829  (0.0462379); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.42
# Mc/sec: 5487.19
//
Query:       CCE29402.1  [L=94]
Description: uncharacterized protein CPUR_03095 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.036   13.4   0.0      0.045   13.1   0.0    1.0  1  BNR_4     BNR repeat-containing family member


Domain annotation for each model (and alignments):
>> BNR_4  BNR repeat-containing family member
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.5e-06     0.045     177     235 ..      20      88 ..      14      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.5e-06
                 GGEEEEEEEEESSTTSS-B-TTS-B--.............SSB-TTT-EE.EE---TTS---SS-EEEE-T CS
       BNR_4 177 etnhdlyYaysddggrtwenaaGekla............elpikvstagvvvdpipknsglinqesvavDk 235
                  + h+l+Y ++++   +w +++G+ +a            +  i+  ++g++++++ k++ ++n+ ++ vD+
  CCE29402.1  20 YSHHWLCYHVYTNT-ASWSESEGRCIAtvqpipgddwqtNCIIAGVQKGYYAFDT-KGNPITNVPAMKVDT 88 
                 578*****999999.6************999999999866667778888888877.688899999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 756.21
//
Query:       CCE29403.1  [L=114]
Description: uncharacterized protein CPUR_03096 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 863.81
//
Query:       CCE29404.1  [L=219]
Description: uncharacterized protein CPUR_03097 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1713.93
//
Query:       CCE29405.1  [L=116]
Description: uncharacterized protein CPUR_03098 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 964.17
//
Query:       CCE29406.1  [L=104]
Description: uncharacterized protein CPUR_03099 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 872.72
//
Query:       CCE29407.1  [L=114]
Description: uncharacterized protein CPUR_03100 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.086   12.1   0.0        0.1   11.9   0.0    1.1  1  GTA_TIM   GTA TIM-barrel-like domain


Domain annotation for each model (and alignments):
>> GTA_TIM  GTA TIM-barrel-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.7e-06       0.1      54     131 ..      24      93 ..      11     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.7e-06
     GTA_TIM  54 dvrailGaetkisYaadWseylghqpadgsgdvafhLDplwadeaidlvgiDnYlPlsDwrdgeehldaeagaasikd 131
                 d+++ +G++ +++Y  d s +l ++    +++      + w++++  +++  +Y+P  Dw ++   + +++g  + ++
  CCE29407.1  24 DCQSAIGSGSTLTYNHDLSRWLCYHV--YTNT------ASWSESEGRCIATQQYIPGKDWETNCIIAGVQQGYYAFDN 93 
                 78899*******************99..3333......3599******************999887777777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 939.86
//
Query:       CCE29408.1  [L=728]
Description: uncharacterized protein CPUR_03101 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.003   17.9   0.0         11    6.7   0.0    4.5  3  LRR_4       Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.039   14.8   0.3       0.19   12.7   0.1    2.3  2  TPR_14      Tetratricopeptide repeat
      0.046   14.4   1.0      0.084   13.5   1.0    1.4  1  TPR_16      Tetratricopeptide repeat
       0.11   12.4   1.2         20    5.2   0.0    3.0  3  TPR_1       Tetratricopeptide repeat
       0.15   11.9   1.4       0.52   10.2   1.4    2.0  1  F-box-like  F-box-like
       0.18   12.1   0.5        7.8    6.9   0.0    2.9  4  TPR_12      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.13     4e+02       2      33 ..     280     312 ..     279     318 .. 0.73
   2 !    6.7   0.0    0.0035        11      21      35 ..     358     372 ..     337     380 .. 0.77
   3 ?    3.2   0.1     0.044   1.3e+02      18      31 ..     633     646 ..     626     651 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.13
                 S--EEE--SS---E-S-HHH.-TT--EEE-.-S CS
       LRR_4   2 nLevLdLsnNqltdipllek.lpnLkeLdLsgN 33 
                  Le+L +     + +p  ++  ++L++++Lsg 
  CCE29408.1 280 GLEHLEIYYMPCQGLPAHKNkWTQLRHVSLSGQ 312
                 677777777777788885544999999999885 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0035
                 H-TT--EEE-.-S-- CS
       LRR_4  21 klpnLkeLdLsgNnl 35 
                  lp+Lk+L + gNn+
  CCE29408.1 358 DLPQLKTLRIGGNNQ 372
                 4*********99987 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.044
                 -HHH-TT--EEE-. CS
       LRR_4  18 lleklpnLkeLdLs 31 
                 +l+ +pnL++L ++
  CCE29408.1 633 FLATFPNLRTLKIN 646
                 56679******994 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.7   1.7e+04      16      30 ..      26      40 ..      23      43 .. 0.79
   2 ?   12.7   0.1   6.3e-05      0.19       3      43 ..     101     141 ..      99     142 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.7
      TPR_14 16 dpdeAiallrralal 30
                 ++ A++ l+ al+ 
  CCE29408.1 26 AHENAVKTLEHALEF 40
                578899999999985 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 6.3e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 al   a  ++alG++d A++ ++++l+laP  ++ +l+l+ 
  CCE29408.1 101 ALDFQAITFEALGKLDHAVKNAEWILELAPRLPDGYLRLGN 141
                 56667999*****************************9985 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   2.8e-05     0.084       4      59 ..     106     158 ..     105     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.8e-05
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59 
                 a  + ++g+ d A++ +e+ l+++   P+ ++ +l lg++a  q++ + A +ly+a
  CCE29408.1 106 AITFEALGKLDHAVKNAEWILELA---PRLPDGYLRLGNLARLQKNDKYAGELYAA 158
                 6667889*****************...99999************998888888876 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.62   1.8e+03      18      27 ..      35      44 ..      27      49 .. 0.74
   2 ?    5.2   0.0    0.0066        20       8      33 ..     106     131 ..     105     132 .. 0.91
   3 ?    4.0   0.5     0.016        47       2      31 ..     134     163 ..     133     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.62
                HHHHHHHHHH CS
       TPR_1 18 deAleyyekA 27
                + Ale++ k+
  CCE29408.1 35 EHALEFFTKV 44
                6788888886 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0066
                 HHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPn 33 
                 + ++  lgk+d A++  e  Lel P 
  CCE29408.1 106 AITFEALGKLDHAVKNAEWILELAPR 131
                 678899*****************995 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALeln 31 
                 + + +lGn+ + +++ + A e y   +e+n
  CCE29408.1 134 DGYLRLGNLARLQKNDKYAGELYAAGIEVN 163
                 78*************999999998888887 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.4   0.00017      0.52       3      46 ..     191     237 ..     189     239 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00017
  F-box-like   3 rLPdEiLlqIFsy.Lpps.dLlr.l.alVCrrWrrvaldtplLWrrlv 46 
                  LP Ei ++IFs  L  s +++r l + V r   r + d p LW +++
  CCE29408.1 191 CLPAEIVSHIFSVvLRVStEWTRkLtSPVHRNLWRNV-DFPHLWFKPY 237
                 6***********5245555999999889999877776.6789998887 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.085   2.5e+02      18      36 ..      26      44 ..      22      47 .. 0.82
   2 ?    6.9   0.0    0.0026       7.8      37      76 ..      91     130 ..      78     131 .. 0.89
   3 ?   -3.6   0.1       4.7   1.4e+04       8      27 ..     138     157 ..     136     166 .. 0.61
   4 ?   -2.7   0.0       2.5   7.6e+03      33      47 ..     473     487 ..     461     487 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.085
      TPR_12 18 rydeAlellekaleiarrl 36
                 ++ A + le+ale ++++
  CCE29408.1 26 AHENAVKTLEHALEFFTKV 44
                5899999999999988776 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0026
      TPR_12  37 lGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                   +d+ + +++l   +++++alg+++ A++  e  l++a+
  CCE29408.1  91 NKCDNMYHIQALDFQAITFEALGKLDHAVKNAEWILELAP 130
                 567889999**************************99986 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 4.7
      TPR_12   8 nlaavlrrlgrydeAlelle 27 
                 +l+++ r +++   A el+ 
  CCE29408.1 138 RLGNLARLQKNDKYAGELYA 157
                 56666666666555555555 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2.5
      TPR_12  33 arrllGpdhpltatt 47 
                   +l G+d+p+ a+t
  CCE29408.1 473 SIKLEGGDWPCKART 487
                 578999***999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 5192.88
//
Query:       CCE29409.1  [L=712]
Description: uncharacterized protein CPUR_03102 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-08   34.6   5.4    3.1e-08   33.4   1.0    3.3  3  F-box-like  F-box-like
    3.2e-05   23.7   0.2    3.2e-05   23.7   0.2    3.5  3  F-box       F-box domain
  ------ inclusion threshold ------
      0.016   16.0   1.4      0.038   14.8   0.4    2.3  2  TPR_14      Tetratricopeptide repeat
      0.072   12.9   1.3        9.8    6.2   0.1    2.9  3  TPR_1       Tetratricopeptide repeat
      0.087   13.3   2.9         11    6.6   0.0    4.5  5  LRR_4       Leucine Rich repeats (2 copies)
      0.092   13.0   0.4         10    6.5   0.0    3.1  3  TPR_12      Tetratricopeptide repeat
       0.11   12.7   2.1         12    6.2   0.0    3.5  3  TPR_2       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.21   5.4e+02      26      43 ..      59      76 ..      47      79 .. 0.84
   2 !   33.4   1.0   1.2e-11   3.1e-08       3      46 ..     191     236 ..     189     238 .. 0.86
   3 ?   -0.3   0.0      0.39     1e+03       1      14 [.     270     283 ..     270     315 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.21
  F-box-like 26 lVCrrWrrvaldtplLWr 43
                ++C+ +  va+d  ++ r
  CCE29409.1 59 CTCKNFEKVAADGDSIFR 76
                79********99877776 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 1.2e-11
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrlv 46 
                  LP Ei ++IFsyL+ ++Llr+++V+++W r   ++    LWr++ 
  CCE29409.1 191 CLPAEIVSHIFSYLSWTELLRARRVSKQWTRKLTSPmqSKLWRNIN 236
                 6****************************99886665557888876 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.39
  F-box-like   1 isrLPdEiLlqIFs 14 
                 +s LPd+++ q ++
  CCE29409.1 270 WSELPDDVITQMLE 283
                 689*****999874 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.2   1.3e-08   3.2e-05       4      33 ..     190     219 ..     188     227 .. 0.92
   2 ?    2.5   0.1     0.053   1.4e+02       2      12 ..     269     279 ..     268     292 .. 0.86
   3 ?   -2.1   1.2       1.5   3.9e+03      31      45 ..     414     428 ..     414     430 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.3e-08
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgw 33 
                 ++LP e++ hI+++L+ ++ll++rrVSk w
  CCE29409.1 190 LCLPAEIVSHIFSYLSWTELLRARRVSKQW 219
                 79**************************** PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.053
                 HHHHS-HHHHH CS
       F-box   2 tlsrLPsevlr 12 
                 ++s+LP++v+ 
  CCE29409.1 269 KWSELPDDVIT 279
                 7*******985 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.5
                 HHHHHHHTTHHHHHH CS
       F-box  31 kgwrilidsdrlwck 45 
                 ++wr  ++++ +++k
  CCE29409.1 414 RTWRTRWRDVWPHLK 428
                 799999999999987 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.4   1.5e-05     0.038       3      42 ..     101     140 ..      99     142 .. 0.93
   2 ?   -3.4   0.0         7   1.8e+04      18      32 ..     175     189 ..     166     190 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 al + a  ++alG++d A++ ++++l+laP+ ++ +l+la
  CCE29409.1 101 ALDLQATTFEALGKLDHAVKNAEWMLELAPQLPDGYLRLA 140
                 7788899*******************************99 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7
      TPR_14  18 deAiallrralalaP 32 
                 ++  +l+r +l+++P
  CCE29409.1 175 QQLYTLYRHVLRQDP 189
                 445567777777776 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0038       9.8      15      27 ..      32      44 ..      29      46 .. 0.91
   2 ?    4.7   0.0     0.011        29       8      33 ..     106     131 ..     104     132 .. 0.90
   3 ?   -2.5   0.1       2.1   5.4e+03       2      16 ..     134     148 ..     133     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0038
                T-HHHHHHHHHHH CS
       TPR_1 15 gkydeAleyyekA 27
                ++y+ Ale+++kA
  CCE29409.1 32 KNYEHALEFFSKA 44
                89**********9 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.011
                 HHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPn 33 
                 + ++  lgk+d A++  e  Lel P+
  CCE29409.1 106 ATTFEALGKLDHAVKNAEWMLELAPQ 131
                 567899*****************996 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHTT- CS
       TPR_1   2 kalynlGnayfklgk 16 
                 + + +l+n  + +++
  CCE29409.1 134 DGYLRLANFARLQKN 148
                 78999**99998887 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0041        11       1      32 [.     286     318 ..     286     327 .. 0.86
   2 ?   -1.1   0.0       1.1   2.9e+03      22      31 ..     366     375 ..     354     383 .. 0.80
   3 ?   -1.8   0.0       1.8   4.7e+03      21      29 ..     392     400 ..     367     404 .. 0.59
   4 ?   -2.5   0.1       3.2   8.3e+03      19      30 ..     473     484 ..     465     490 .. 0.66
   5 ?    2.9   0.0     0.061   1.6e+02      18      31 ..     637     650 ..     630     653 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0041
                 SS--EEE--SS---E-S-HHH.-TT--EEE-.- CS
       LRR_4   1 pnLevLdLsnNqltdipllek.lpnLkeLdLsg 32 
                 p+Le+L ++n   + +p  ++  ++L++++Lsg
  CCE29409.1 286 PSLEHLVIHNMPCSGLPAHKNkWTQLRYVSLSG 318
                 79*******999******6655*********88 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
                 -TT--EEE-. CS
       LRR_4  22 lpnLkeLdLs 31 
                 lp+Lk+L + 
  CCE29409.1 366 LPHLKTLQIG 375
                 9999999884 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.8
                 H-TT--EEE CS
       LRR_4  21 klpnLkeLd 29 
                  +p+L++L 
  CCE29409.1 392 AFPSLEQLC 400
                 477777774 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 3.2
                 HHH-TT--EEE- CS
       LRR_4  19 leklpnLkeLdL 30 
                 l  l +L++++L
  CCE29409.1 473 LMALNSLQHISL 484
                 445788888887 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.061
                 -HHH-TT--EEE-. CS
       LRR_4  18 lleklpnLkeLdLs 31 
                 +l+ +pnL++L ++
  CCE29409.1 637 FLATFPNLRTLKIN 650
                 46679******993 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.073   1.9e+02      15      30 ..      30      45 ..      26      49 .. 0.56
   2 ?    6.5   0.0     0.004        10      39      76 ..      93     130 ..      90     131 .. 0.90
   3 ?   -0.4   0.0      0.55   1.4e+03       6      34 ..     136     164 ..     133     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.073
      TPR_12 15 rlgrydeAlellekal 30
                + ++y+ Ale++ ka+
  CCE29409.1 30 ATKNYEHALEFFSKAM 45
                4455555555555554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.004
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +d+ + +++l   +++++alg+++ A++  e  l++a+
  CCE29409.1  93 CDNVDHIQALDLQATTFEALGKLDHAVKNAEWMLELAP 130
                 6888999**********************999999886 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.55
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiar 34 
                 + +la++ r +++   A+el+ + +ei +
  CCE29409.1 136 YLRLANFARLQKNDKYACELYAAGMEISK 164
                 5589*****************99999874 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0049        12      14      31 ..      31      48 ..      30      49 .. 0.85
   2 ?    1.8   0.1      0.13   3.4e+02       3      33 ..     101     131 ..      99     132 .. 0.83
   3 ?    2.3   0.2     0.089   2.3e+02       2      32 ..     134     164 ..     133     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0049
       TPR_2 14 lgdyeeAleafekAleld 31
                 ++ye Ale+f kA   +
  CCE29409.1 31 TKNYEHALEFFSKAMNSC 48
                68************8655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.13
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 al  ++   ++lg+++ A++  e  lel+P+
  CCE29409.1 101 ALDLQATTFEALGKLDHAVKNAEWMLELAPQ 131
                 6777888999*********999888888875 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.089
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                 +++ +l++ ++ +++ + A e++ +  e+  
  CCE29409.1 134 DGYLRLANFARLQKNDKYACELYAAGMEISK 164
                 7899*******************98888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4941.96
//
Query:       CCE29410.1  [L=208]
Description: uncharacterized protein CPUR_03103 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1585.37
//
Query:       CCE29411.1  [L=385]
Description: uncharacterized protein CPUR_03104 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0017   18.7   9.8         23    5.6   0.0    6.9  7  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.21   3.7e+03      23      30 ..       8      15 ..       2      41 .. 0.70
   2 ?    0.6   0.0     0.049   8.7e+02      24      32 ..      67      75 ..      60      81 .. 0.71
   3 !    3.8   0.3    0.0046        83      15      30 ..      86      98 ..      66     104 .. 0.66
   4 ?   -0.2   0.1     0.082   1.5e+03      21      36 ..     116     129 ..     107     136 .. 0.64
   5 !    3.0   0.0    0.0083   1.5e+02      13      30 ..     172     189 ..     149     197 .. 0.77
   6 !    4.0   0.0    0.0042        75      12      32 ..     206     228 ..     199     235 .. 0.78
   7 !    5.6   0.0    0.0013        23      18      32 ..     309     323 ..     303     328 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.21
                TT--EEE- CS
       LRR_4 23 pnLkeLdL 30
                p+L++L  
  CCE29411.1  8 PSLEHLEF 15
                66666654 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.049
                T--EEE-.- CS
       LRR_4 24 nLkeLdLsg 32
                +L++LdL g
  CCE29411.1 67 SLEHLDLVG 75
                577777644 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.0046
                E-S-HHH-TT--EEE- CS
       LRR_4 15 diplleklpnLkeLdL 30
                +ip+   lp+Lk+L L
  CCE29411.1 86 SIPF---LPKLKTLRL 98
                4444...999999988 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.082
                 H-TT--EEE-.-S--- CS
       LRR_4  21 klpnLkeLdLsgNnli 36 
                  lp L++L   +N  i
  CCE29411.1 116 ALPRLEQLCFLEN--I 129
                 4899999943455..3 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.0083
                 --E-S-HHH-TT--EEE- CS
       LRR_4  13 ltdiplleklpnLkeLdL 30 
                 l+ i  l  l++L++++L
  CCE29411.1 172 LRAIRYLTALKSLQHIHL 189
                 566777778999999998 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.0042
                 ---E-S-HH.H.-TT--EEE-.- CS
       LRR_4  12 qltdiplle.k.lpnLkeLdLsg 32 
                  l+d++ ++ + ++nL+++ L g
  CCE29411.1 206 LLSDFDVPRySdFKNLRSVRLDG 228
                 689999977755*******9955 PP

  == domain 7  score: 5.6 bits;  conditional E-value: 0.0013
                 -HHH-TT--EEE-.- CS
       LRR_4  18 lleklpnLkeLdLsg 32 
                 +l+ +pnL++L++s+
  CCE29411.1 309 FLATFPNLRTLSISS 323
                 36679*******965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2763.62
//
Query:       CCE29412.1  [L=224]
Description: uncharacterized protein CPUR_03105 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.02   14.8   0.5       0.31   11.0   0.2    2.4  2  F-box-like  F-box-like
      0.059   13.2   0.4        7.8    6.5   0.0    2.7  2  TPR_1       Tetratricopeptide repeat
        1.9    9.5   6.1        1.9    9.5   0.4    3.2  4  TPR_14      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.052   3.1e+02      15      35 ..      40      60 ..      26      64 .. 0.71
   2 ?   11.0   0.2   5.2e-05      0.31       2      20 ..     183     201 ..     182     207 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.052
  F-box-like 15 yLppsdLlrlalVCrrWrrva 35
                ++ ++ L+r  + C+ + +va
  CCE29412.1 40 CRCARGLARFKCICKNFEEVA 60
                4455668999999***99998 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 5.2e-05
  F-box-like   2 srLPdEiLlqIFsyLppsd 20 
                 ++LP Ei   IFsyL+ ++
  CCE29412.1 183 LSLPAEIVGLIFSYLSWTE 201
                 58*************7555 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0013       7.8      10      33 ..     101     124 ..     100     125 .. 0.92
   2 ?    4.0   0.4    0.0083        50       2      18 ..     127     143 ..     126     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0013
                 HHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  10 ayfklgkydeAleyyekALelnPn 33 
                 +y  +gk+  A+e+ e  Lel P 
  CCE29412.1 101 MYETMGKLHLAVEDAEWMLELAPR 124
                 6999*****************995 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0083
                 HHHHHHHHHHHHTT-HH CS
       TPR_1   2 kalynlGnayfklgkyd 18 
                 + + +lGn+ + +++ d
  CCE29412.1 127 DGYLRLGNLARLQKNDD 143
                 789*********99865 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.32   1.9e+03       6      26 ..      15      35 ..      10      39 .. 0.73
   2 ?    9.5   0.4   0.00031       1.9       3      43 ..      94     134 ..      92     135 .. 0.91
   3 ?   -0.5   0.1      0.51   3.1e+03      33      42 ..     141     150 ..     134     152 .. 0.52
   4 ?   -0.5   0.1      0.54   3.3e+03       9      15 ..     146     152 ..     141     187 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.32
      TPR_14  6 alaeallalGdpdeAiallrr 26
                a+a++  a  + ++A+++l  
  CCE29412.1 15 ARASYAVATKENEGALEILTM 35
                677777888888888887755 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00031
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 al ++ + +++ G++  A++ ++++l+laP  ++ +l+l+ 
  CCE29412.1  94 ALDLRSAMYETMGKLHLAVEDAEWMLELAPRLPDGYLRLGN 134
                 77888999*****************************9985 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.51
      TPR_14  33 ddaeawllla 42 
                 +d+ aw l+a
  CCE29412.1 141 NDDYAWALYA 150
                 4445555544 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.54
      TPR_14   9 eallalG 15 
                 +al+a+G
  CCE29412.1 146 WALYAAG 152
                 4444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1754.78
//
Query:       CCE29413.1  [L=400]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-24   84.3   0.0    8.2e-11   41.8   0.0    2.1  2  Pkinase      Protein kinase domain
    8.1e-11   41.7   0.0      1e-05   25.0   0.0    2.2  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   2.1e-14   1.9e-10       1     131 [.      47     184 ..      47     197 .. 0.89
   2 !   41.8   0.0   9.2e-15   8.2e-11     135     264 .]     242     399 ..     231     399 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 2.1e-14
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEE....SSEEEEEEE--TTEB..HHHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk..hpnivrlyevfee....kdelylvleyvegge..ladller 91 
                 y+ l+klG G+ ++   a+++++++ vAvK++  + +++++  k+lr ++ l k +  ++++ ++++ f++     ++ +lvle+v  +   + ++++ 
  CCE29413.1  47 YKILHKLGWGGHATTWAAKDQKDDRYVAVKIMVSKIEESREL-KMLRALSALPKDHpgSSYVNQMLDHFTHvgpnGTHNCLVLELVGPNVaeFVEYYRM 144
                 77899*************************998887777665.89999999988777899*********99999999********97653337777778 PP

                 HSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEE CS
     Pkinase  92 kgslseeeakkiakqilegleylHskgiiHrDlKpeNiLi 131
                 +  l+ + ak +akq+l+gl++l  ++i H Dl + N+ i
  CCE29413.1 145 NNRLPAKLAKLFAKQTLQGLDFLATNNIGHGDLHTGNLAI 184
                 899********************************99866 PP

  == domain 2  score: 41.8 bits;  conditional E-value: 9.2e-15
                 TEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT....SHH...HH CS
     Pkinase 135 gelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg....etkeklpe 229
                   +Ki+DFG a   +     ++    +   APE++ + + +  vD+Ws+G++++ l++g  p+       ++ + ++q  +i+ + +     ++     
  CCE29413.1 242 PSIKIIDFGEAFFGDDAP--STLKTPRVLQAPEIVFGDRLDLRVDLWSAGCLIFDLVSGYRPLD---AWWSQFNLVRQ--MIAATSEelpsRWQA---- 329
                 569*******99888865..7888888899**********************************...33333455555..333333322223333.... PP

                 HTTS......................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 230 asei......................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                                              +++ +  ll+ +p+ R ta+e l+h+++
  CCE29413.1 330 ---KwramqrekargdggptlqkwleqvyfhdendaeftmeeIACVTKAIAGLLRLEPSLRATARESLAHNWF 399
                 ...23334666999*************************8876677899***********************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.1e-09     1e-05       6     134 ..      52     182 ..      47     188 .. 0.80
   2 !   14.4   0.0   1.9e-06     0.017     142     234 ..     244     331 ..     233     338 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.1e-09
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS..-BTTB--EEEEEE....SSSSEEEEEE--TTE..BHHHHHHHT CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl..khpnivkllgvct....keepllivteyvkgG..dLlkfLrkk 95 
                  klG G  ++ + +    +++k++  VavK++ ++ +e+++ ++l+ ++ + k       + ++l   t    ++ + ++v+e+v  +  ++ ++ r +
   CCE29413.1  52 KLGWGGHATTWAA----KDQKDDRYVAVKIMVSKIEESRELKMLRALSALPKDhpGSSYVNQMLDHFThvgpNGTHNCLVLELVGPNvaEFVEYYRMN 145
                  5555555554444....5569999************************99775445678888999988555556669******965433888998888 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGE CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNv 134
                    ++l  k    fa q  +G+++L+++++ H dl + N 
   CCE29413.1 146 --NRLPAKLAKLFAKQTLQGLDFLATNNIGHGDLHTGNL 182
                  ..88888888889*********************99886 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.9e-06
                  EEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS.HHHHHHHHHHTTEES-BBTTSBHHH CS
  Pkinase_Tyr 142 vkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypgl.kneevleklkegkrlekpekcpeel 234
                  +ki DfG a          + ++ k+p    apE+++  ++  + D Ws G l++ +++ g +p+  + ++ ++++++ + +  e p+ +++++
   CCE29413.1 244 IKIIDFGEAFFG-----DDAPSTLKTPRVLQAPEIVFGDRLDLRVDLWSAGCLIFDLVS-GYRPLDAWwSQFNLVRQMIAATSEELPSRWQAKW 331
                  677777766555.....22334567788889****************************.*****99989999999998888877777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3381.96
//
Query:       CCE29414.1  [L=107]
Description: uncharacterized protein CPUR_03107 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.025   14.7   0.0      0.042   14.0   0.0    1.3  1  Fun_ATP-synt_8  Fungal ATP synthase protein 8 (A6L)


Domain annotation for each model (and alignments):
>> Fun_ATP-synt_8  Fungal ATP synthase protein 8 (A6L)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.4e-06     0.042       6      27 ..      54      75 ..      52      78 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-06
                    SSTHHHHHHHHHHHHHHHHHHH CS
  Fun_ATP-synt_8  6 PFYFvNqltfgfliltvllylf 27
                    PFYF+ ++  +fl + +ll ++
      CCE29414.1 54 PFYFIDIVAHSFLEIKILLTAS 75
                    ******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 763.79
//
Query:       CCE29415.1  [L=317]
Description: uncharacterized protein CPUR_03108 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-55  187.7   1.7    2.9e-55  187.5   1.7    1.1  1  NPP1      Necrosis inducing protein (NPP1)


Domain annotation for each model (and alignments):
>> NPP1  Necrosis inducing protein (NPP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   1.7   1.6e-59   2.9e-55       3     196 .]      90     303 ..      88     303 .. 0.93

  Alignments for each domain:
  == domain 1  score: 187.5 bits;  conditional E-value: 1.6e-59
        NPP1   3 aalkfqPvldi.kdgCypypAvdadGelsgGlkpt..gsesggCrdssr..ksqvYaRsrcsnggw.aimYayYfpkdqaak.....ssghrHdWenvv 90 
                  a+++qPvld+ +++Cy++pA+da+G++++Glk +   + sggCr++++  +++vY+Rsrc n+gw a+mY++Yf+kd + +     +sghrH+Wen+v
  CCE29415.1  90 DAMHYQPVLDYsTHSCYNVPAIDAEGNVAEGLKSSyqTNLSGGCRKKEHldNQNVYVRSRC-NNGWcAYMYEHYFEKDVGLQhvagiASGHRHEWENAV 187
                 5789*****************************995455599*******************.*****************9999999************* PP

        NPP1  91 Vwidndakeeskvlgvsasahgkykkkt...kastvrlegshvkivyhkdgagthalrfaeakd............getqpLvsweqlpd.aardaLnn 173
                 V ++n    e  +  v+asah++y++++   + ++vr++g hvk+vyhkdgagtha+rf + +d            g   +Lv+w+++p+ ++rd++++
  CCE29415.1 188 VVVKNG---EGFPRLVAASAHDGYSRRMprkQVRRVRFQGAHVKLVYHKDGAGTHAFRFGKLSDenikndkhkwvrG---ALVDWNGFPTfELRDRMVR 280
                 *****9...6799************999644445899***********************99999*******98776...9****************** PP

        NPP1 174 adfgsaakvplkDanfeenLeka 196
                 a +++ ++ +++Da+f++ Leka
  CCE29415.1 281 AFVNTGTEPKISDAHFAKYLEKA 303
                 *99999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2460.33
//
Query:       CCE29416.1  [L=271]
Description: uncharacterized protein CPUR_03109 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-34  117.2   0.0      1e-26   92.6   0.0    2.2  2  NTP_transf_9  Domain of unknown function (DUF427)


Domain annotation for each model (and alignments):
>> NTP_transf_9  Domain of unknown function (DUF427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.9e-09   6.9e-05       1      39 [.      33      71 ..      33      96 .. 0.90
   2 !   92.6   0.0   5.6e-31     1e-26       3      92 ..     162     251 ..     160     252 .. 0.97

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.9e-09
                  EEEE-SS-EEEEES--EEEEETTS--EEEB-GGGB-GGG CS
  NTP_transf_9  1 vrvklngtvvaetddavvveetglppryYfppedvklel 39
                  +rv++n t+++++ + v+v+e++ +p++Yfp +++k  +
    CCE29416.1 33 IRVIFNRTIIVDSAKSVYVWEHDSYPQFYFPTSELKNCY 71
                  6899*****************************998655 PP

  == domain 2  score: 92.6 bits;  conditional E-value: 5.6e-31
                   EE-SS-EEEEES--EEEEETTS--EEEB-GGGB-GGGEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEESS--TT-GGGTT-BEE-T CS
  NTP_transf_9   3 vklngtvvaetddavvveetglppryYfppedvklellkpsdtttvCpwKGeasyyslavdgkevkdaaWsYpeptpeaaeikgyvaFya 92 
                   +kl g++va+ d+ ++++etg p+ryY+ p++v+++ll++s+  t Cp+KG+a+yy++  dg e+k+ +W+Y++p +e+a+i+g+++F +
    CCE29416.1 162 IKLLGKTVAKVDSSIHLHETGRPVRYYISPAAVDPKLLRKSALVTSCPYKGDAEYYDIILDGLEHKNLVWYYRHPVRESAAIAGLLCFEH 251
                   7888************************************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2103.79
//
Query:       CCE29417.1  [L=471]
Description: probable biotin synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.4e-23   80.2   0.0    2.4e-22   78.8   0.0    1.8  1  BATS         Biotin and Thiamin Synthesis associated domain
    4.3e-15   56.5   0.1    1.5e-14   54.7   0.1    1.9  2  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> BATS  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   2.7e-26   2.4e-22       1      86 []     364     455 ..     364     455 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 2.7e-26
                 E--B----TCCCC...........HHHHHHHHHHSTTSE.CCCTCHH-HHHHHH.HHHCCT--EEE-C---TTTGGGSESSTT-TCCCCHHHHHHTT-E CS
        BATS   1 siprlrpikdtpl...........lkiiaalRlllPkag.illsgResaefrdq.lllklGansisagsktevggyaflttdgrsleedvkmleelGle 86 
                 ++++l+pik+tpl           l++ia++Rl++P +  ++++gR+++++++q l++++Gan+i++g+k       +ltt+++ ++ed +++ ++Gle
  CCE29417.1 364 PVNALVPIKGTPLgdttplaftsmLRTIATARLIMPATViRIAAGRKTMSEEKQaLCFMAGANAIFTGEK-------MLTTECNGWDEDSALFGRWGLE 455
                 89*******************************************************************9.......********************85 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.1   1.7e-18   1.5e-14       4     162 ..     190     348 ..     187     353 .. 0.83
   2 ?   -2.1   0.0      0.49   4.4e+03      46      87 ..     399     442 ..     385     457 .. 0.71

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.7e-18
                  ESEESS--TTTSCCTT...HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS......TTHHHHHHHHHHTCCCTEEEEEEECSSCHGHH CS
                  xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   4 trgCnlrCsfCarpet...vrregrgrslsveeileevkelkaekgvkevilgggeplly......pdfvellerlaklavpgiritvetngtlpdee 92 
                  t gC+ +Cs+Ca+ +    +      r+ +ve++l+ +k + +e+g   + +g    +++      +++++ ++  ++    g++++v+   +   +e
   CCE29417.1 190 TGGCTEDCSYCAQATRyqkGTGLQAKRVETVESVLAAAKTA-KENGSTRFCMGAAWRDMRgrknslKNITDMVKGVKAM---GMEVCVTLGMID--DE 281
                  78************9999988999999**************.6889999999955555552222226666666666665...666666655555..9* PP

                  HHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  93 klerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeelee 162
                  +++ l+++g++ +++++++  ++ + + +  + +++e+l++l   r+agi+ v+++ +++ Ge+ e++  
   CCE29417.1 282 QARQLKDAGLTAYNHNVDTSREF-YPNVI-TTRSYDERLKTLSHVRDAGIN-VCSGGILGLGESSEDRIG 348
                  ***********************.*****.99*******************.888888888888888765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.49
                  TSEEEEEESSTGGGSTTHHHHHHHHHHTC..CCTEEEEEEECSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
  Radical_SAM  46 gvkevilgggepllypdfvellerlakla..vpgiritvetngt 87 
                   + ++ +  g  ++  +++ l +++ ++a    +  +t e+ng 
   CCE29417.1 399 PATVIRIAAGRKTMSEEKQALCFMAGANAifTGEKMLTTECNGW 442
                  35677777777788888888888888877777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3443.06
//
Query:       CCE29418.1  [L=660]
Description: uncharacterized protein CPUR_03111 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-05   23.8   0.4     0.0001   22.1   0.4    2.0  1  F-box-like  F-box-like
     0.0084   16.5  12.7         33    5.1   0.3    6.6  6  LRR_4       Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.035   14.9   1.9        2.1    9.4   0.8    3.6  3  TPR_14      Tetratricopeptide repeat
      0.053   13.4   0.2       0.14   12.0   0.2    1.7  1  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.4   2.3e-08    0.0001       3      47 ..     184     230 ..     182     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.3e-08
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrlvl 47 
                  LP Ei   IFsyL+ ++++ + +V+++W+r   ++    LWr +v+
  CCE29418.1 184 CLPAEIVGLIFSYLSWNEIIVVLRVSKKWNRELTSPvhGILWRDIVF 230
                 6*****************************98855544578888775 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.3    0.0074        33       1      31 [.     282     313 ..     282     320 .. 0.78
   2 ?   -2.9   0.0       2.3   1.1e+04      24      30 ..     341     347 ..     335     349 .. 0.67
   3 ?    3.3   0.1     0.027   1.2e+02      15      32 ..     360     374 ..     358     401 .. 0.81
   4 ?    4.3   0.2     0.013        60      13      30 ..     445     462 ..     423     469 .. 0.76
   5 ?    3.2   0.0     0.029   1.3e+02       6      36 ..     472     505 ..     471     510 .. 0.71
   6 ?    2.9   0.0     0.036   1.6e+02      16      32 ..     579     598 ..     577     604 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0074
                 SS--EEE--SS---.E-S-HHH-TT.--EEE-. CS
       LRR_4   1 pnLevLdLsnNqlt.diplleklpn.LkeLdLs 31 
                 p+Le+L L++  l+ ++p+ +++ n Lk +++s
  CCE29418.1 282 PSLEHLVLHH-PLRlSLPSNKNIWNkLKNVSIS 313
                 79********.***8888855644458888885 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.3
                 T--EEE- CS
       LRR_4  24 nLkeLdL 30 
                 +L++L+L
  CCE29418.1 341 SLEHLSL 347
                 4555554 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.027
                 E-S-HHH-TT--EEE-.- CS
       LRR_4  15 diplleklpnLkeLdLsg 32 
                 +ip+   lp+Lk+L L+g
  CCE29418.1 360 SIPF---LPKLKTLQLNG 374
                 5677...99999998865 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.013
                 --E-S-HHH-TT--EEE- CS
       LRR_4  13 ltdiplleklpnLkeLdL 30 
                 +  i  l  l++L++L+L
  CCE29418.1 445 IMAIRYLTALKSLQHLYL 462
                 777888889*******99 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.029
                 EE--.SS---E-S-HH.H.-TT--EEE-.-S--- CS
       LRR_4   6 LdLs.nNqltdiplle.k.lpnLkeLdLsgNnli 36 
                 L ++ +  l+d++  + + + nL+++ L g n +
  CCE29418.1 472 LFCGsHGLLSDLDVSRySdFENLRSVRLLGVNAL 505
                 5555444699999955555********9885554 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.036
                 -S-...HHH-TT--EEE-.- CS
       LRR_4  16 ipl...leklpnLkeLdLsg 32 
                 +pl   l+ +pnL++L +s+
  CCE29418.1 579 LPLpqfLATFPNLRTLIISS 598
                 5552234479*****97755 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.24   1.1e+03       7      33 ..      16      42 ..      11      49 .. 0.74
   2 ?    9.4   0.8   0.00048       2.1       3      43 ..      94     134 ..      92     135 .. 0.92
   3 ?   -0.0   0.0      0.49   2.2e+03       9      27 ..     235     253 ..     234     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.24
      TPR_14  7 laeallalGdpdeAiallrralalaPd 33
                +a   +a  + ++A+++l  a++ +P 
  CCE29418.1 16 RAYNAAATKENEGALEILTMAIRSCPC 42
                333345668999999999999998885 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00048
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 al ++ + +++ G+++ A++ ++++l+laP  ++ +l+l+ 
  CCE29418.1  94 ALDLRSAMYETMGQLRLAVEDAEWMLELAPRLPDGYLRLGN 134
                 77888999*****************************9985 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.49
      TPR_14   9 eallalGdpdeAiallrra 27 
                 e++++  +pd+++++l +a
  CCE29418.1 235 EYYWTMPRPDQMRKILSWA 253
                 589***********99876 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   3.2e-05      0.14       4      35 ..     183     214 ..     180     220 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.2e-05
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwri 35 
                 ++LP e++  I+++L+  +++   rVSk+w++
  CCE29418.1 183 LCLPAEIVGLIFSYLSWNEIIVVLRVSKKWNR 214
                 79****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4790.02
//
Query:       CCE29419.1  [L=497]
Description: related to LCB2-serine C-palmitoyltransferase subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-31  109.8   0.0    7.6e-31  107.6   0.0    1.9  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.016   13.7   0.0      0.031   12.8   0.0    1.4  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.0   8.5e-35   7.6e-31      29     361 ..      61     458 ..      33     460 .. 0.83

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 8.5e-35
                    H..................HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THH CS
  Aminotran_1_2  29 e..................galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasy 106
                                       +++a+g++   g++ ++ +le+++a+f+g        + aa+++ sG+ a+   l+ ++  + gd+++ +++ +as+
     CCE29419.1  61 AqdslplpqshqqtqaqtfSLGACGSRLLDGNSPLAEALEHEIASFHG--------APAALLFNSGFEANTG-LFGCT-PQEGDVVVYDELIHASV 146
                    3345555555555555699*****************************........777********97765.55666.47*************** PP

                    HHHHHHTTSEEEEEEBEET........TTTEE-HHHHHHHHTTHHCTTE.......................................TEEEEEEE CS
  Aminotran_1_2 107 knilrlsggevvryplyse........edfhldlealeealkeapegnk.......................................ktkvilve 155
                    +++++ls+g  v ++ +          ed    le+++e l+++  +++                                       ++ +i+ve
     CCE29419.1 147 HDGVKLSRGRGVAFAHN-CvrreggamEDGLPSLEEVLEGLERDDREDVgeeeradederasrdvndvvaeggartkknrrsrerrtrRNIFIAVE 241
                    **********6666633.3567888888888888888888888777777999******************************************** PP

                    SS-TTT--B--HHHHHHHHHHHHHT.TEEEEEEETTTTCBSSSS..HTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHH CS
  Aminotran_1_2 156 sphNPtGtvatleeleklldlakky.nlllfvDeaYagfvfgsl..davatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsr 248
                     +++++G++a+l+++++ ++ +  + n +++vDea++++ +g++  ++v+  +++e++++ + v +++Ka+G+aG   +++l+++  + +l + +r
     CCE29419.1 242 AVYSMDGDLAPLQDIVDCVEACLPHgNGYIVVDEAHSTGWMGEKgrGMVS-SLGLEDKIW-ARVHTFGKAMGCAG---AAVLCSPPTRAYLINYAR 332
                    ******************************************99765555.9********.**************...****************** PP

                    HHTSSHHHHHHHHHHHHHHHHHHH.....HHHHHHHHHHHHHHHHHHHHHHS........TEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEE CS
  Aminotran_1_2 249 pflsssllqaavaaalsdallkqs.....eleemrqrlqkrrkelrdeLael........glkvlasqsgmflltdlsaetakelskkLleevgvy 331
                    +++++++l   +++a+++a +  s      l  +   l +++++l ++L  +         ++  a+ s +++l      +a  l++ ++ + g  
     CCE29419.1 333 SLIYTTALGFPLLTAIQTAYDFLStgqatPLARNLLALTSLAHQLLSALSTKyrppvrllRVPTEAPASPIVPLFSD---RARRLARYCQGR-GFM 424
                    ****7777766666666666666668666667777777777777777776668888877667777777777776333...367*********.*** PP

                    EEEGGGGTS...TTEEEEEC.TTS-HHHHHHHHH CS
  Aminotran_1_2 332 vtpgtsftv...pgrlRitv.Aglteeeleelve 361
                    v+++  +tv   + r+R+++ Ag te+e++ l+ 
     CCE29419.1 425 VRAIVAPTVkkgTDRVRLCLhAGNTEDEVRGLCL 458
                    ***********999***************99985 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.4e-06     0.031      51     102 ..      93     144 ..      71     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.4e-06
                      -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEEEESTSSH CS
  Cys_Met_Meta_PP  51 nptrsvleeriaaLeggeaalavssGmaAiaaailallkaGdeivvsddlYg 102
                       p  ++le++ia  +g+ aal+++sG  A +  +    ++Gd +v ++ ++ 
       CCE29419.1  93 SPLAEALEHEIASFHGAPAALLFNSGFEANTGLFGCTPQEGDVVVYDELIHA 144
                      58899*************************7777777778999988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3705.71
//
Query:       CCE29420.1  [L=839]
Description: related to adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-40  137.7   0.0    3.3e-21   75.4   0.0    3.2  2  Aminotran_3  Aminotransferase class-III
    4.6e-14   52.7   0.0    7.3e-14   52.0   0.0    1.3  1  AAA_26       AAA domain


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   3.7e-25   3.3e-21      30     222 ..     343     583 ..     340     590 .. 0.85
   2 !   52.5   0.0   3.5e-18   3.1e-14     229     310 ..     611     699 ..     604     727 .. 0.92

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 3.7e-25
                  EESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-...SEEEEESSHHHHHHHHHHHHHHHHHHTS...HCTT-EEE CS
  Aminotran_3  30 lDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapk.gldkvflansGseAvetAlKlarkyarekk...atektkii 123
                   D+ +s++   lGh++Pk++ a++++a    hv+f+   ++pa+ lae llk + +  l +vf+ ++Gs  +e+A+K+  + ar++      ek +i+
   CCE29420.1 343 FDASASWWTQGLGHSNPKLTLAAAHAAGRYGHVMFASAIHQPAISLAETLLKGMQNpRLRRVFYSDNGSTGTEVAVKMGLRAARTRYgwgPREKLHIL 440
                  6999**********************************************7654431499******************99988877667689999*** PP

                  EETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HH..........................................HHHHHHH CS
  Aminotran_3 124 afkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkene..........................................eeeaall 179
                   +kga+HG+t+ga+  +++  +y+++++    + + l yp  + +k+                                             e+a+ +
   CCE29420.1 441 GLKGAYHGDTMGAMDCADP-GIYNEKIEWYEGKGHWLDYPT-VLCKSGRwtvsgmaaqeknedipsaedgwparaydslheifdveareaaGEHAMYE 536
                  ***************9999.**********99999999995.55555546788888888999999999999999999999999998877754444455 PP

                  HHHHHHH...CHTCCCEEEEEE-S.CETTTTSEB--CCHHHHHHHHH CS
  Aminotran_3 180 eeleale...kkkkdevaAvivEp.iqgegGvvvaspeflaklrelc 222
                  e+++      +++  +  A+++Ep i g+gG+ +++p f ++l +  
   CCE29420.1 537 EYITCTLqrlQAQGRKFGALMLEPiILGAGGMQFVDPLFQRTLVNTV 583
                  55554335778999999999999999999999999999999886655 PP

  == domain 2  score: 52.5 bits;  conditional E-value: 3.5e-18
                  EEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS......B--TTTT-HHHHHHHHHHHHHHHH CS
  Aminotran_3 229 livDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgs......hgsTfgGnplacavalavleiiee 310
                  +i+DEv tG+ r G l     +gv+pD+ + aK ltgG  pl a+la + + +++ + +      hg+++++ p+ c val++l+ ++ 
   CCE29420.1 611 IIFDEVFTGLYRLGRLTPSSFLGVHPDISVHAKLLTGGlVPLCATLASESIFNTFLSPDktdallHGHSYTAHPIGCQVALESLREMQA 699
                  8*******************99********************************988778************************98765 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   8.2e-18   7.3e-14       5     178 ..      18     204 ..      14     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 8.2e-18
      AAA_26   5 vtgtdtgvGKTvvslgLvralkr..kgvkvgyfKPiqtgieededselikellgldqtyelpeplalsaplspelaarqegedidlekiv......... 92 
                 v g  t+vGKT+ +++L+r  +r  ++  v+++KP++tg e de +++ ++l++     + ++ + ++ p+sp+ aa   g+ i  ++           
  CCE29420.1  18 VFGANTDVGKTIFTTLLARTARRngRDEHVAFLKPVSTGAE-DEADDRCEHLACFAPGVSRRTLYQYDIPCSPHTAALASGRPIPSDDALlaecrafaa 115
                 78999****************99666677***********6.788899*****************************9999877766555666669999 PP

      AAA_26  93 ...kelekdadivvVEGagglgvpiteellnadiaknlgapvilVargglgtinqllltiealrqknvrvlGvilNkvrnpenvetlek 178
                     + + +   ++ E agg+ +p  +++++ad+   l+ap +l++ ++lg i q+++++e+lr ++  v +v l + +  en++ l  
  CCE29420.1 116 qcaAAASSNGGWLFMETAGGVHSPGPSGQTQADLYIPLRAPALLIGDSRLGGISQTIAAYESLRIRGYDVEAVLLFRNARYENHRFLAD 204
                 98777888899**************************************************************9998666677766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 6078.50
//
Query:       CCE29421.1  [L=549]
Description: uncharacterized protein CPUR_03114 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4286.89
//
Query:       CCE29422.1  [L=630]
Description: related to acid sphingomyelinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-14   54.7   1.1      3e-14   54.0   1.1    1.4  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   1.1   1.7e-18     3e-14       2     203 ..     159     421 ..     158     422 .. 0.67

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 1.7e-18
                  EEEEEESBTB.....................................TTCCTHHHHHH........HHHHHH..HHH.TTESEEEEESTSSSSS.... CS
  Metallophos   2 rilvigDlHl.....................................algggqlddll........kllddl..lre.ekpdlvllaGDlvdrg.... 47 
                   i++ +D+Hl                                     +         +        + ++d+  + + +++ + +++GD+vd+g    
   CCE29422.1 159 QIVHYSDVHLdplysegtstqcqrpsccrtlgqdskekplhgagrfgD--------HKcdtpmtleRSMHDFikK-KfPNAAFAMFTGDIVDHGahnt 247
                  699******************999999999999777777555443332........2222222222333333333.258999999*********8865 PP

                  ..HHHHHHHHH.HHHHHHHTSEEEEEC-TTSCHHH.HHHHHHHHHHHHHHHHEHH...HCEEETSEEEEEETTE....EEEEEEESECEEE....... CS
  Metallophos  48 ..dlekellel.laalvkypipvylllGNHegfee.ellnkygylgifsepwrsd...aevfnnlplaslgsgs....lkvlllhGgspel....... 127
                    +++ +l+e+ ++ + ++ + vy ++GNHe  +  + + +++  +    +w +d   +++   l+ +s  +++    +     hG+   l       
   CCE29422.1 248 skNYNRDLIEQaYDNMHDSMDIVYGTAGNHE-AHPvNTFAPQTVGND--TQWLYDslfKKWSHELNTSSSTDQKfmgsYSAKYPHGN---Lriislnt 339
                  55444445555455555556669********.666677777776664..45555544655555555555555534433222222222...12232222 PP

                  .THHHHHHHHHHHSCHHHHCC.HHHHHH..HHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTT..ESEEEEESSSS CS
  Metallophos 128 .lvsldklgslnleleapepg.dewlkd..lekrekadwvivlgHsplyrgsgylfgdealedllkkyg..vdlvisGHtHv 203
                    +   +l  +++  e + +g   wl +  + +++ ++ v+++gH+p+ +    l g++ +  + ++y   +++ ++GHtH 
   CCE29422.1 340 nMYYRFNLLLYQKVMERDPDGqLAWLVNelNAAEKAGENVYIIGHMPMGSDDALLNGSNYFSQIVQRYSktIKAMFFGHTHA 421
                  2233345555555555555559999999*********************9999999999999**9999999**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4556.92
//
Query:       CCE29423.1  [L=514]
Description: probable benzoate 4-monooxygenase cytochrome P450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-85  286.8   0.0    3.3e-85  286.6   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.6   0.0   1.8e-89   3.3e-85      11     461 ..      50     508 ..      39     510 .. 0.90

  Alignments for each domain:
  == domain 1  score: 286.6 bits;  conditional E-value: 1.8e-89
                 HCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSH CS
        p450  11 gnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsf 109
                 +  l + r++++++ +++++   g++ r+++++   v + + ea+  v+++++   ++++++a+++++r+ f++++ + ++++++   ++f+t+++ +f
  CCE29423.1  50 WL-LSVCRRGHRYKTVDECHANLGKVIRIQPNH---VSIADDEAIPVVYGHGNGLLKSEFYDAFVSIRRGLFNTRDRAEHSRKRKLVSHTFSTKSIVQF 144
                 43.44445799******************9987...6677888***********************988888888887777777777777777776655 PP

                 STTTHHHHHHHHHHHHHHHHHCCCCHCS..........EEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH...........HHHHHHHHHHHHH..HHH CS
        p450 110 gklsleelveeeaedlveklrkkagess..........elditellskaaldvigsilFgarfdlledek...........lselvkaveelss..lls 185
                      e+++ e  + +v++l+k  +es             d   +++  a+dvig+++Fga+f++l +             ++ +  a+e l++  ++s
  CCE29423.1 145 -----EPFIHENLALFVKQLDKLIQESPhstrdgrkeaHTDSLLWFNFLAFDVIGDLAFGAPFGMLAKGAdvaeirsspnsPPVYSPAIEILNRrgEVS 238
                 .....8899999999999998888888888888889999******************************************888888888888888999 PP

                 CHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 186 kssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlsw 284
                 ++  ++ +l+p +k++p+ ++ k  +av+ l++++ + ++ r e+  +   +r+d+l+ l++ k + +ge  l +eel+a++l+ l+aG+dTts+ ++ 
  CCE29423.1 239 ATLGCYPQLKPYAKWIPDAFFSKGLAAVQNLAGIAIARVKARIENPPNV--ERKDLLARLMEGK-DDNGE-PLGREELTAEALTQLIAGSDTTSNSSCA 333
                 *************************************************..9***********8.77776.9*************************** PP

                 HHHHHHHSHHHHHHHHHHHHHHC.CTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS...CEEETTEEE-TT-EEEEEHHHHHT-TTTS.S CS
        p450 285 aLyeLaknPevqeklreEidevl.gdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk...dvvirgylipkGtevivnlyalhrdpevf.p 378
                 ++ +L+ nP v ekl+ E+d ++  d++ pt+d++ +l+yl +vi EtLR h ++ ++lpR +++    +++rg+ +p+Gt+ +v++y++h++ e++ p
  CCE29423.1 334 VMNYLLLNPRVHEKLQRELDAAVpDDVQVPTFDMVRHLEYLAWVIDETLRHHCTSGIGLPRLIPHdspGITFRGHYFPAGTVLSVPTYTIHHSTEIWgP 432
                 ***********************999***************************************55559***************************** PP

                 STTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSCSSEEESSSSEE CS
        p450 379 nPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileksglllppkpikl 461
                 ++eeF+peR+ +++    r++ af+PF+ GpR+C+G+++A+me+kl++at ++++ v+  +++++++++    +l++p ++k+
  CCE29423.1 433 DAEEFRPERWQNATP---RQKNAFVPFSHGPRACVGRNVAEMEMKLIVATWVRRYAVTR-RQGEMKTREG---FLRKPLGLKV 508
                 *************75...9***************************************4.4455544444...8999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3900.22
//
Query:       CCE29424.1  [L=518]
Description: related to quinate transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-64  216.7  14.7      7e-64  216.3  14.7    1.2  1  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.3  14.7   3.9e-68     7e-64     121     452 .]      91     454 ..      82     454 .. 0.92

  Alignments for each domain:
  == domain 1  score: 216.3 bits;  conditional E-value: 3.9e-68
                 HHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-..TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHH CS
    Sugar_tr 121 vlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsn..adgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrg 216
                 +l+P+yi+E+Ap+++Rg ++ ++  a+ +Gi++a+++++g   ++sn  +++w ++  l +++a ++++l+++  ESPr+lv++gk  +a+ vla+l +
  CCE29424.1  91 ALIPIYIAEVAPASVRGLCTCFFTGAVYIGIVLAYFTNYGAkLHISNssHKQWLVPSSLHIIMASIIFLLMFVQSESPRFLVKRGKIRKATSVLARLSQ 189
                 589**************************************88999999************************************************** PP

                 CHHHHHHHHHHHHHHHHHHH..............HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHHHHHHH CS
    Sugar_tr 217 eedadrelaeekdsleaeqeee.........kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvtiivgvvnfva 303
                 ++ ++ +++  ++ ++a+ ++e          +++ke++  k++++r+ +++++q++ q +G  +i+ y+  +f+ lg+  +   ll+t+++g+v+ va
  CCE29424.1 190 QPAESGYVVRQISDIQATLDNEieatrgmgwANKIKEMFIVKSNLYRVYMAIMVQLLSQWSGAGSITVYAVDLFKILGIHGEeqgLLITAVFGIVKLVA 288
                 *9999999888888888888888888*9999999999999999*************************************9999***********9987 PP

                 HH.HHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS..............CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHH CS
    Sugar_tr 304 tf.vaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks...........kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskal 388
                  + +a+flvd +GR++ ll+G++ +ai +++++      ++++ s            aas +ai++i+l  +  algw+++ ++l +Elfp+++R++a+
  CCE29424.1 289 ALaCALFLVDVIGRKRALLTGIVLQAISMIYIAafL--SAVPEVSlksavglppwqFAASRGAIAMIYLSGCGWALGWNSMQYLLTAELFPLRIRALAT 385
                 65277***************************9432..333333366889***99889***************************************** PP

                 HHHHHHHHHHHH.....HHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 389 aiavavnwlanf.....lisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 + a+++++  ++     + ++l p+ ++ ++  ++f+ fa++ +++ ++v+f vpet gr+le +++lf
  CCE29424.1 386 SSAMTLHFANQYgntraVPNMLLPVSDGGVSPQGTFFCFAVVTIIGGFWVWFSVPETSGRSLETMDRLF 454
                 ****999987652223377888899999999***********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3987.17
//
Query:       CCE29425.1  [L=570]
Description: related to quinate transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-80  270.5  24.6    3.2e-80  270.2  24.6    1.0  1  Sugar_tr  Sugar (and other) transporter
    6.1e-13   48.4  33.3    6.1e-13   48.4  33.3    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.097   12.9   0.1       0.28   11.4   0.1    1.7  1  DUF4381   Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.2  24.6   5.3e-84   3.2e-80      10     452 .]      40     512 ..      31     512 .. 0.91

  Alignments for each domain:
  == domain 1  score: 270.2 bits;  conditional E-value: 5.3e-84
                 HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGG CS
    Sugar_tr  10 llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivg 108
                    g d g+i ++ ++ +f+    + +++  +++       + +++++G+++G+l+a l+ dr+GR  +  + +vl ++g+++ ++     ++ ++++g
  CCE29425.1  40 AARGIDEGLITGAFNSADFQASIRYASYSVVQKA--NIKANVSAMVQIGSVAGALIAFLVCDRIGRIMATRFLCVLWIVGTIIFMIGGVHGNLGAIYAG 136
                 5566677777777777776666665555543433..4567889999*************************************9999999********* PP

                 HHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-..TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-H CS
    Sugar_tr 109 RvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsn..adgwrillglqlvpallllilllflPESPrylvekgke 204
                 R+++G+gvG + v+ P+yi+E+Ap+++Rg ++ ++  a+ +Gi++a+++++g   ++sn  +++w ++  l +++a ++++l++   ESPrylv++gk+
  CCE29425.1 137 RFITGLGVGQTPVVGPIYIAEVAPASIRGLCTCFFTGAVYIGIVLAYFTNYGAkLHISNssHNQWLVPSSLHIIMAGIIFLLMFAQFESPRYLVKQGKR 235
                 *****************************************************88999999************************************** PP

                 HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH..............HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HH CS
    Sugar_tr 205 eeakevlaklrgeedadrelaeekdsleaeqeee.........kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...ll 291
                 +ea++vla+lr++++++++++  +++++a+ + e           ++ke++ +k++++r+ ++ ++q++ q +G  +i+ y+  +f+ lg+  s   ll
  CCE29425.1 236 QEATRVLARLRQQSEDSEYVVRQISEIQAALDHEleatrgvgwAGKLKEMFLNKSNLYRVYMATMVQLLSQWSGAGSITLYAVDLFKLLGIRGSeegLL 334
                 *************9999888888888888877777788*99999999******99******************************************** PP

                 HHHHHHHHHHHHHH.HHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS............CHHHHHHHHHHHHHHHTTTTHHHHHHHHHH CS
    Sugar_tr 292 vtiivgvvnfvatf.vaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks.........kaasivaivfialfialfalgwgpvpwvlvsEl 378
                 vt+++g+++ va + +a+flvd +GR++ ll+G++ + +++++++    a ++ +++          aas +ai++i++  +  algw+++ ++l +El
  CCE29425.1 335 VTAVFGIIKLVAALaCALFLVDVIGRKRALLTGIVLQGVAMIYVAafLTAVPGLSEKsdmvmttsqLAASRGAIAMIYISGCGWALGWNSMQYLLTAEL 433
                 ********998765277************************999999788888888889****99889******************************* PP

                 SHTTTHHHHHHHHHHHHHHHHH.....HHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 379 fpqsvRskalaiavavnwlanf.....lisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 fp+++R++a++ a+++++  ++     + ++l p+  + i+  ++f+ f ++ +l+ ++v++ vpet gr+le +++lf
  CCE29425.1 434 FPLRIRALATSWAMTLHFANQYgntraVPNMLLPVSEGGISPQGTFWCFSAVTILGGFWVWLSVPETSGRSLESMDRLF 512
                 **************99988664333338899999999***************************************997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4  33.3     1e-16   6.1e-13      10     344 ..      44     449 ..      33     452 .. 0.73
   2 !   13.8  22.7   3.5e-06     0.021       4     181 ..     301     504 ..     295     526 .. 0.73

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1e-16
       MFS_1  10 larsilgpalplalaedlgispseigl...........lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa...sslw.lllvlrv 93 
                 ++ ++++ a+    + d+++s   ++            + +++ +g+++++l++  + dr+Gr     +  +l+++g ++++++   ++   +++++r+
  CCE29425.1  44 IDEGLITGAFN---SADFQASIRYASYsvvqkanikanVSAMVQIGSVAGALIAFLVCDRIGRIMATRFLCVLWIVG-TIIFMIggvHGNLgAIYAGRF 138
                 55555666665...5666655555555556666667779999***********************999999999999.77775336777777******* PP

       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspke 186
                 ++Glg g    +g ++ia+++p + rg+ + ++++++ +G++l++        +++      W ++  ++ i++ + f+l ++  +e+p+   ++ +++
  CCE29425.1 139 ITGLGVGQTPVVGPIYIAEVAPASIRGLCTCFFTGAVYIGIVLAYFTNYGAKLHISnsshnqWLVPSSLHIIMAGIIFLL-MFAQFESPRYLVKQGKRQ 236
                 *****************************************999666553334444667889999999999999999885.244567777777776666 PP

       MFS_1 187 ee................................kgtgpaplvpaw.kallkdpvlw....illialllfffgfsglltllplylqevlgls....gll 244
                 e                                 + t + +++  + +++l++  l+    + ++ ll+ + g  +++ +    l + lg+     g l
  CCE29425.1 237 EAtrvlarlrqqsedseyvvrqiseiqaaldhelEATRGVGWAGKLkEMFLNKSNLYrvymATMVQLLSQWSGAGSITLYAVD-LFKLLGIRgseeG-L 333
                 66999999999999999999999999998888885555555555440444444455443333444444444444444444444.2566666676677.6 PP

       MFS_1 245 laglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt.............ssavllll..........vlvliGfglgfvfps 320
                 l++++++++ lv+a +  +a +l+d +gr+r+ll +++l  +a + +a + ++             +                 ++++ G+g+++ + s
  CCE29425.1 334 LVTAVFGIIKLVAALA--CALFLVDVIGRKRALLTGIVLQGVAMIYVAAFLTAvpglseksdmvmtT------SqlaasrgaiaMIYISGCGWALGWNS 424
                 6666777777777777..777888************9999888888887777778998776665540......144455666669999999***99666 PP

       MFS_1 321 llal.asdlappeeagtasglfnta 344
                 +++l +++l+p + ++ a+++++t+
  CCE29425.1 425 MQYLlTAELFPLRIRALATSWAMTL 449
                 6665156777999999999999886 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.5e-06
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltl.yalgaavaslpl.GrlsdrfGrrrvlllglllfalg.lllllf..a.......ss...... 84 
                 +++ls ++ +  ++++   l + lgi +se gll+t+ +++  +va+l    +l+d +Gr+r ll+g++l +++ +++++f  a       s       
  CCE29425.1 301 VQLLSQWSGAGSITLYAVDLFKLLGIRGSEEGLLVTAvFGIIKLVAALACaLFLVDVIGRKRALLTGIVLQGVAmIYVAAFltAvpglsekSDmvmtts 399
                 4555555555566666557778899********888868999999999996888********************6666667662434444311444433 PP

       MFS_1  85 ....lwlllvlrvlqGlgagalfpagaal.iadwfpkeergraigllsa.........gfslGailgpllggllasslgWravfyilaivsllafvlfl 169
                     +   +++  ++G g ++++ ++++l +a++fp + r++a++++++         + ++  +l p+  g ++     +++f+ + +v++l++   +
  CCE29425.1 400 qlaaSRGAIAMIYISGCGWALGWNSMQYLlTAELFPLRIRALATSWAMTlhfanqygnTRAVPNMLLPVSEGGIS----PQGTFWCFSAVTILGGF--W 492
                 3332334888888*************9972589****************99977775555555578888888887....99999999999999965..3 PP

       MFS_1 170 lllpeepperkr 181
                 ++l +++++ + 
  CCE29425.1 493 VWLSVPETSGRS 504
                 455444444433 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   4.7e-05      0.28      28      75 ..     210     262 ..     197     279 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.7e-05
     DUF4381  28 lll..llllvlalwllrrrkrn...rreAlreLaalradeadakellaalsel 75 
                 +++  ++ll++a +   r+  +   r+eA r La+lr++++d++ +++++se+
  CCE29425.1 210 IMAgiIFLLMFAQFESPRYLVKqgkRQEATRVLARLRQQSEDSEYVVRQISEI 262
                 2221234444444444444433666************9999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.21s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4434.32
//
Query:       CCE29426.1  [L=472]
Description: related to bifunctional polynucleotide phosphatase/kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-52  176.0   0.0    8.6e-52  175.1   0.0    1.5  1  PNK3P        Polynucleotide kinase 3 phosphatase
      4e-22   78.9   0.6    4.5e-19   69.0   0.6    2.4  1  AAA_33       AAA domain
  ------ inclusion threshold ------
      0.021   14.6   0.0       0.11   12.2   0.0    2.1  2  AAA_29       P-loop containing region of AAA domain
      0.029   14.8   0.4       0.33   11.4   0.1    2.2  2  AAA_17       AAA domain
      0.052   13.9   0.0        1.8    8.9   0.0    2.2  2  AAA_16       AAA ATPase domain
      0.054   13.8   0.0       0.12   12.6   0.0    1.6  1  AAA_22       AAA domain
      0.058   13.4   0.0       0.11   12.5   0.0    1.4  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
       0.08   12.1   0.0       0.12   11.5   0.0    1.3  1  G-alpha      G-protein alpha subunit
      0.087   12.9   0.1       0.33   11.0   0.0    2.0  2  MMR_HSR1     50S ribosome-binding GTPase
        0.1   11.7   0.0       0.19   10.8   0.0    1.4  1  NB-ARC       NB-ARC domain
       0.11   12.8   0.4         32    5.0   0.0    2.9  2  DUF3046      Protein of unknown function (DUF3046)
       0.12   12.9   0.0       0.46   11.0   0.0    2.1  2  ABC_tran     ABC transporter
       0.13   12.2   0.0       0.22   11.4   0.0    1.3  1  NACHT        NACHT domain
       0.14   12.3   0.3        1.1    9.4   0.2    2.5  2  Hydrolase_6  Haloacid dehalogenase-like hydrolase
       0.16   12.5   0.0       0.34   11.5   0.0    1.5  1  AAA_18       AAA domain
       0.19   11.2   0.1       0.56    9.7   0.0    1.7  2  AAA_7        P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> PNK3P  Polynucleotide kinase 3 phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.1   0.0   7.7e-55   8.6e-52       1     162 []      85     257 ..      85     257 .. 0.97

  Alignments for each domain:
  == domain 1  score: 175.1 bits;  conditional E-value: 7.7e-55
       PNK3P   1 kiaaFDlDstliktksgkefakdaddwkllsesvlekLkkl.keegykivifsNqggvvek.........ktkkslekfkekieallkeldvpllvyaa 89 
                 k+a+FDlD+tlikt+sg+++a+ + dwk++++ v+  L++l  +++y+++i+sNqgg++ +          ++k+++ fkek+ea+l+eld+p+ +yaa
  CCE29426.1  85 KFAVFDLDGTLIKTRSGVKHASTSGDWKWWNDDVPGVLRALhMQKDYQVIIVSNQGGISLEnqpnaksnpGKRKRATAFKEKCEAILEELDIPTSIYAA 183
                 789**************************************66667************99999999998888999************************ PP

       PNK3P  90 tkkdkyRKPetGmweelkkdlee.kleidkeksfyvGDaagrklkkkkkkdfsdsDkkfAenvgikFktPeefF 162
                  ++d++RKP+tG+w+e+++d++  + e+d  ksf+vGDaagr +  + + dfs+sD+ fA+nvg++F+tPe +F
  CCE29426.1 184 SENDIFRKPRTGIWDEVCDDYDVsRGEVDLVKSFFVGDAAGRSAGPEGPADFSSSDRDFANNVGLSFTTPEAYF 257
                 **********************9889***********************************************9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.6     4e-22   4.5e-19       1     122 [.     300     401 ..     300     415 .. 0.89

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 4e-22
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrerarflklarrlgvpv 99 
                 ++l+ G pGsGKst+ +++l +lg++++++dtl  +l                   +++ ++a++ ls+g++v++d+tn++ ++r+++++la++++vp+
  CCE29426.1 300 VILFLGRPGSGKSTFFKKYLSHLGYQRVNQDTLG-TL------------------PKCV-ARAKDLLSQGKSVVIDNTNRNIKTREAWVALAKDAKVPI 378
                 89*****************************943.22..................3466.7888999******************************** PP

      AAA_33 100 rivvvetdeetlkeRlakRaang 122
                 r+v+++t  +++k++ a+R  n+
  CCE29426.1 379 RCVWFQTTFAVCKHNDAVRVLNK 401
                 *******************9986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.9e-05      0.11      23      39 ..     298     315 ..     289     319 .. 0.81
   2 ?   -1.5   0.0       1.9   2.1e+03      34      41 ..     349     356 ..     347     359 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.9e-05
      AAA_29  23 g.atlltGpsGsGKSTll 39 
                 + ++l+ G+ GsGKST++
  CCE29426.1 298 QdVILFLGRPGSGKSTFF 315
                 2589************86 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
      AAA_29  34 GKSTllDA 41 
                 GKS ++D 
  CCE29426.1 349 GKSVVIDN 356
                 ******95 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1    0.0003      0.33       1      25 [.     304     328 ..     304     332 .. 0.91
   2 ?    2.4   0.1      0.18     2e+02      52     129 ..     326     408 ..     323     414 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0003
                 EE-TTSSHHHHHHHHHHHHTEEEEE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthls 25 
                 lG PGsGK+t  +k   ++g++ ++
  CCE29426.1 304 LGRPGSGKSTFFKKYLSHLGYQRVN 328
                 699*****************98765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHHH....HSSEEEEEE-SEEEETTEEEESSHHHHHHHH...SEEEEEE--HHHHHHHHHHHTTST-TS CS
      AAA_17  52 eekkelqkeaaekiaeea....kkkgvlvdghprikeqagfldglpkevleelkp.daiilleadpeeilerrlkdrtrgrdd 129
                 +++++++ ++ + +a+++    + k v++d   r+ ++++++  l k+ +  +    + + + +++ +   r+l+++ + +dd
  CCE29426.1 326 RVNQDTLGTLPKCVARAKdllsQGKSVVIDNTNRNIKTREAWVALAKDAKVPIRCvWFQTTFAVCKHNDAVRVLNKTLSADDD 408
                 55666677777777776667656678*****************9999876666432555557777777777777744344333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0016       1.8      25      51 ..     299     325 ..     291     345 .. 0.81
   2 ?    2.7   0.0      0.14   1.5e+02      36      63 ..     349     376 ..     347     432 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0016
      AAA_16  25 elvllsGesGvGKsslvrellralekd 51 
                  ++l+ G +G+GKs+  ++ l +l  +
  CCE29426.1 299 DVILFLGRPGSGKSTFFKKYLSHLGYQ 325
                 689*************99999988877 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.14
      AAA_16  36 GKsslvrellralekdggiflrgkcdql 63 
                 GKs +++   r +++++++++ +k  + 
  CCE29426.1 349 GKSVVIDNTNRNIKTREAWVALAKDAKV 376
                 9***************999877776555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011      0.12       4      29 ..     297     322 ..     294     370 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
      AAA_22   4 tagilvvtGesGtGKTtllrrlleql 29 
                 ++ +++  G +G+GK+t  +++l+ l
  CCE29426.1 297 GQDVILFLGRPGSGKSTFFKKYLSHL 322
                 7889999***************9987 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.8e-05      0.11      16      49 ..     294     328 ..     281     335 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.8e-05
                 HCH.TEEEEEEESTTSSHHHHHHHHHHHTT----- CS
        TsaE  16 kal.gdvilLeGdLGaGKTtlvrglakalgveevk 49 
                 k+  +dvil+ G  G+GK+t+ ++ +++lg+++v+
  CCE29426.1 294 KNEgQDVILFLGRPGSGKSTFFKKYLSHLGYQRVN 328
                 4335789***********************99886 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.12      24      43 ..     299     318 ..     286     415 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
                 EEEEEEESTTSSHHHHHHHH CS
     G-alpha  24 vkllllGqseSGKsTilkql 43 
                   +l+lG  +SGKsT++k+ 
  CCE29426.1 299 DVILFLGRPGSGKSTFFKKY 318
                 359**************985 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.3   2.6e+03      52      57 ..     117     134 ..      84     191 .. 0.54
   2 ?   11.0   0.0   0.00029      0.33       2      22 ..     301     321 ..     300     364 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.3
                 ECGGC............S CS
    MMR_HSR1  52 DtpGl............i 57 
                 D+pG+            i
  CCE29426.1 117 DVPGVlralhmqkdyqvI 134
                 666652222222222220 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00029
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 ++++Grp +GKSt++++ +  
  CCE29426.1 301 ILFLGRPGSGKSTFFKKYLSH 321
                 789************998765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00017      0.19      15      43 ..     294     321 ..     290     332 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
                 TTTSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  15 kdelqslvvalvGmgGvGKttlakqilnk 43 
                 k+e +++v+ + G++G+GK+t +k+ l++
  CCE29426.1 294 KNE-GQDVILFLGRPGSGKSTFFKKYLSH 321
                 333.4479999*************98887 PP

>> DUF3046  Protein of unknown function (DUF3046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.033        38      49      59 ..     196     206 ..     190     208 .. 0.88
   2 ?    5.0   0.0     0.029        32      41      60 ..     358     377 ..     336     379 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.033
     DUF3046  49 VWralcdafdv 59 
                 +W ++cd++dv
  CCE29426.1 196 IWDEVCDDYDV 206
                 9*********9 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.029
     DUF3046  41 eaGvdprdVWralcdafdvP 60 
                 ++ +++r+ W al ++ +vP
  CCE29426.1 358 NRNIKTREAWVALAKDAKVP 377
                 577899*************9 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       4.3   4.8e+03      79      95 ..     153     177 ..      83     210 .. 0.64
   2 ?   11.0   0.0   0.00041      0.46       9      30 ..     295     317 ..     289     425 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4.3
                 H........HHHTCHHHHHHHSTTG CS
                 x........xxxxxxxxxxxxxxxx RF
    ABC_tran  79 n........esdeeiekalsklglk 95 
                 n        + +e++e++l++l+++
  CCE29426.1 153 NpgkrkratAFKEKCEAILEELDIP 177
                 2433334445555566666666554 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00041
                 ETTS.EEEEEESTTSSHHHHHHH CS
                 xxxx.xxxxxxxxxxxxxxxxxx RF
    ABC_tran   9 kege.kvaivGenGaGKStLlkl 30 
                 +eg+ ++ ++G+ G+GKSt++k 
  CCE29426.1 295 NEGQdVILFLGRPGSGKSTFFKK 317
                 5555256789*********9984 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0002      0.22       2      36 ..     300     333 ..     299     360 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SE CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafkl 36 
                 +++  G++GsGK+t+ +k  + +  ++ +q++   
  CCE29426.1 300 VILFLGRPGSGKSTFFKKYLSHLGYQRVNQDT-LG 333
                 7899**************99999999999975.54 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00097       1.1       2      45 ..      88     145 ..      87     155 .. 0.71
   2 ?   -0.8   0.0       1.4   1.6e+03      27      58 ..     346     378 ..     330     408 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00097
                  EEESTTTSE.............ETTEE-TTHHHHHHHHHHT.T-EEEEEE---SS-HH CS
  Hydrolase_6   2 lfDidGvLw.............rgdkaipgaaealnalraa.gkpvvllTNnssksee 45 
                  +fD+dG+L+             + +   + ++ +l+al+ +  ++v++++N+++ s e
   CCE29426.1  88 VFDLDGTLIktrsgvkhastsgDWKWWNDDVPGVLRALHMQkDYQVIIVSNQGGISLE 145
                  8********777777777766533334455555555555441589*******999876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.4
                  HHTT-EEEE.EE---SS-HHHHHHHHHHTT--- CS
  Hydrolase_6  27 raagkpvvl.lTNnsskseeeyakkleklgvdi 58 
                   ++gk vv+  TN++ k++e+ ++  ++  v+i
   CCE29426.1 346 LSQGKSVVIdNTNRNIKTREAWVALAKDAKVPI 378
                  445555555369999999999888888887776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0003      0.34       1      67 [.     301     367 ..     301     382 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0003
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpealdeskrldedkldklldaleen 67 
                 Il  G pG+GK+t+ k   ++lg+  vn   + +   ++    +  l++ k +++d++++++++ e++
  CCE29426.1 301 ILFLGRPGSGKSTFFKKYLSHLGYqRVNQDTLGTLPKCVARAKDL-LSQGKSVVIDNTNRNIKTREAW 367
                 8899*********98765566788755554444555555544444.6667777777766666665555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0005      0.56      34      62 ..     299     327 ..     294     334 .. 0.84
   2 ?   -2.4   0.0       2.5   2.8e+03      45      61 ..     349     365 ..     347     370 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0005
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkeky 62 
                   +l+ G  G+GK++  k++l++l  +++
  CCE29426.1 299 DVILFLGRPGSGKSTFFKKYLSHLGYQRV 327
                 5689******************9986655 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.5
       AAA_7  45 GKtviikdllkkldkek 61 
                 GK+v+i ++ +++++++
  CCE29426.1 349 GKSVVIDNTNRNIKTRE 365
                 9*******999988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3546.76
//
Query:       CCE29427.1  [L=281]
Description: uncharacterized protein CPUR_03120 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-24   86.5   0.0    3.1e-24   86.2   0.0    1.1  1  Med18     Med18 protein


Domain annotation for each model (and alignments):
>> Med18  Med18 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.0   1.7e-28   3.1e-24       1     249 []       2     261 ..       2     261 .. 0.84

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 1.7e-28
                 EEEEEEEEE-HHCHHHHHHHHHCCSEE..EEEEEEEEEEEEETT...........SSSSS--CTTTSEEEEEEGTTSH................TTSST CS
       Med18   1 helsLvssvphanyeqllstLqgltgmlqpqeiatytlvtkpnrvf.....kpkflpgkvnqieqlymklittlndeke..dyslkviekvkeddsdie 92 
                 hel+L + v++++++ + ++L g+++m +p e +++ l +++ +       ++++ ++  +    l+  l ++l++++   +  ++v+++ +       
  CCE29427.1   2 HELFLTAFVEDKDFNAACAVLGGFCAM-SPWETVNRVLYFQGPPRPsgitnQSSIDKPMRKDAAFLWKDLHQSLSRQSCilQARYEVLKDRD----MGP 95 
                 9**************************.999999******9544222455555555555566666666666666666444444444444422....222 PP

                 GCC.........TS-EEEEEE----SS-.SSS-EEEEEEEEEE..ESS-HTHHHHHTTEEEEEEEEEEEEEEEETTEEEEEEEEE.EESSTTB...... CS
       Med18  93 akklfseeekveerpwtLqisDiPeagk.nqkvlvrtiyestlverkdsllqfledlGysvineYivkGvrFfhgdivielfkvfkrddekqee..... 185
                 + ++     + +  p  L++ D+P+++  +  +++r+i+e+    ++++l + l + +y++++e +++ +rFf +d+++ l + + ++  +++      
  CCE29427.1  96 SATP----TDLNAMPGVLRFADFPDPPHgRPLITQRKIVEIW---EQKKLPSILRENNYRFKTETVEENHRFFRDDVEFCLTRHYFVRGIAHYTslehr 187
                 2222....223378**************56667899******...9*************************************99988888888899** PP

                 ............-TSTEEESSTT--EEEEEEEEES-TTSHHHHHHHHHHHHHHHHHHCTTS-EB.......--X CS
       Med18 186 ..........lpdkiklklldesntflikayinvnkstdiesinqgvkeLlklkeeLkglvkLeipDRmslDsR 249
                           lp  ++++++d++n +++ + ++v + + +++i++   +L +++ eL+++++++ +DR++ D+R
  CCE29427.1 188 gdqqptplaaLPAWDAVTPVDTQNRWVLFVKVHVIQDNKPDEIRKVQDQLMSVRGELENAFDFKTIDRKVHDTR 261
                 ************************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2219.71
//
Query:       CCE29428.1  [L=582]
Description: uncharacterized protein CPUR_03121 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 4268.16
//
Query:       CCE29429.1  [L=46]
Description: uncharacterized protein CPUR_03122 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 374.57
//
Query:       CCE29430.1  [L=100]
Description: uncharacterized protein CPUR_03123 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.092   13.1   2.6       0.12   12.7   2.6    1.2  1  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-


Domain annotation for each model (and alignments):
>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.6   6.8e-06      0.12       1      70 [.       1      72 [.       1      80 [. 0.50

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.8e-06
     PBP1_TM  1 msgdDRePiGRkGkkakakparkkasrrrrrdddyddeyddeedDd....ddddeeeevprkgkkkkpprkkrr 70
                m+ dD    G   k+++++ +  + +r+r   +d d  yd++e+D+     +dd +e+  +  ++++   k+rr
  CCE29430.1  1 MAADDSRGNGGGKKNQTHNFQDPQETRQRLGVEDVDG-YDEDEEDFlggeANDDVQEHFNHV-ENANLDDKRRR 72
                5556654444333333345555666677777777777.777777762220334444444444.44444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 812.03
//
Query:       CCE29431.1  [L=260]
Description: uncharacterized protein CPUR_03124 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-06   27.1   0.0    4.2e-06   26.6   0.0    1.1  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.3e-10   4.2e-06       2      76 ..     155     229 ..     154     245 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.3e-10
       RVT_2   2 tyrlvslPkdrkaigsrWvftkkkddlkevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelv 76 
                  ++l  lP + k    rWv+t+k     e   kar va+G +     ++++ +a v++l s+r++  +  ++++ 
  CCE29431.1 155 CWTLEILPDGAKVFDGRWVYTIKYPIDGEPYAKARWVARGDQHAEVFEHEDLYAAVAHLVSLRVFCTIVGVNDFD 229
                 799999*****************988889999********98888899*****************9998776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1993.97
//
Query:       CCE29432.1  [L=247]
Description: uncharacterized protein CPUR_03125 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-37  127.4   0.0    8.2e-37  127.1   0.0    1.1  1  RVT_2           Reverse transcriptase (RNA-dependent DNA poly
  ------ inclusion threshold ------
      0.021   14.3   0.0       0.03   13.7   0.0    1.2  1  Rib_hydrolayse  ADP-ribosyl cyclase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.1   0.0   9.1e-41   8.2e-37      61     234 ..       2     173 ..       1     182 [. 0.93

  Alignments for each domain:
  == domain 1  score: 127.1 bits;  conditional E-value: 9.1e-41
       RVT_2  61 dsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkqPpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgeg 159
                 d++rL+la++aee+   hq d++ af ++el+e +y+k P G  i   ++  ++  kslyGlkqa++ Wn+ i++ L k gf +s+a   ++++++++ 
  CCE29432.1   2 DTLRLFLAVTAEEDDECHQYDIKNAFTESELKEIIYLKAPEGVSIK--KGLFWQALKSLYGLKQAARDWNRLIKDELVKWGFMQSTADPCMFTHSKTSV 98 
                 789******************************************9..99*******************************************997666 PP

       RVT_2 160 klivalyvddlliagsdikiledvkkelakkfklkdlgkvskfLGieiaq..eaggiklsladyiakvvkkfeltda 234
                  l+  +yvdd++ a+  +++l+++ ++l+++f+ k+lg+++k LG  +++  ++ ++++ +++y+++v+++f++t+ 
  CCE29432.1  99 GLL--VYVDDIVAAARTTRELDGFWRKLSARFNAKNLGEIEKILGARVTRdrKTRTLEIDQEQYLTSVLDQFGITKE 173
                 665..6******************************************985567788899**************975 PP

>> Rib_hydrolayse  ADP-ribosyl cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.4e-06      0.03      51     157 ..      31     144 ..      17     153 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.4e-06
                     GGHHHHHH--.----STT-EE--------------------GGGSHH..HHHCTT-----B...TTBSS--SS-B---.SSS---HHHHHHHHHH CS
  Rib_hydrolayse  51 dYdellklas.qtvpcdkslfWsktkdlvhsyteatkelltledtll..GyiadelsWCgq...eessglnyqsCpkw.edcennavssfWkraS 138
                     + +e++ l++ + v  +k lfW+  k+l     +a++    ++d l+  G+++ + + C     ++s gl +   + +  + +++  + fW++ S
      CCE29432.1  31 ELKEIIYLKApEGVSIKKGLFWQALKSLYGLKQAARDWNRLIKDELVkwGFMQSTADPCMFthsKTSVGLLVYVDDIVaAARTTRELDGFWRKLS 125
                     55556655440457999**********9987777777778888888655999877777765211444455544444442445666899******* PP

                     HHHHHH--EEEEEEEESSS CS
  Rib_hydrolayse 139 kkfaeaasGvvtvlLngse 157
                     ++f  +  G+++ +L + +
      CCE29432.1 126 ARFNAKNLGEIEKILGARV 144
                     ************9998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1969.89
//
Query:       CCE29433.1  [L=114]
Description: uncharacterized protein CPUR_03126 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 953.09
//
Query:       CCE29434.1  [L=285]
Description: uncharacterized protein CPUR_03127 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0069   16.7   1.5       0.01   16.2   1.5    1.3  1  RskA      Anti-sigma-K factor rskA
  ------ inclusion threshold ------
      0.033   14.9   0.8      0.059   14.0   0.8    1.4  1  Pex14_N   Peroxisomal membrane anchor protein (Pex14p) conser


Domain annotation for each model (and alignments):
>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.5   1.1e-06      0.01      23      87 ..      73     147 ..      39     161 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-06
                 .......................XXXXXXXXXXXXXX.................XXXXXXXXXXXXXXXXXXXXX CS
        RskA  23 aaaaaaapppaaapaararr...laaaaAaalllvlg.......qlavasaaldplrqsaaqaeavvavlaapda 87 
                 +++ ++ pppa+a++ ++r    l a++A++++lv+g        ++  ++++d+ ++ +a+ +a+va  + ++a
  CCE29434.1  73 PQVVPRLPPPAPAQRGSRRMmacLSAVIAVLAVLVIGlaagtgvATRNYRSERDRYQDLQASYSALVANATGSAA 147
                 444455555555554444448998888888888888877878777777777777777777777777777666633 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   6.5e-06     0.059      72     146 ..      39     108 ..       4     122 .. 0.49

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.5e-06
     Pex14_N  72 sssatpqpqaasqtsqsspspsppaqqqqqqyrpPivtypefltkppkppppPlrtwrdllitatalagl.gagly 146
                 ++ a+p p+ +s+t++s+ +++      ++ + + ++ yp+++ + p+ p+p +r  r+++  + a+ ++ ++++ 
  CCE29434.1  39 NQPAEPWPPHTSTTADSTDPSN-----HSPIKTEDYQSYPQVVPRLPP-PAPAQRGSRRMMACLSAVIAVlAVLVI 108
                 2333333333333322222221.....222224677899987776555.556666555555444433333033333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2382.54
//
Query:       CCE29435.1  [L=303]
Description: uncharacterized protein CPUR_03128 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-14   54.0   0.0    2.9e-14   53.2   0.0    1.4  1  FHA           FHA domain
  ------ inclusion threshold ------
      0.066   13.5   0.0        1.8    8.9   0.0    2.3  1  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d
        5.4    5.7   4.5        5.9    5.5   4.5    1.2  1  Presenilin    Presenilin


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   4.8e-18   2.9e-14       1      69 []     209     289 ..     209     289 .. 0.95

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 4.8e-18
                 EEEESS.TTSSEETTSTTSTTTEEEEEEETT...........CEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA   1 vtiGRs.sdcdivlddpsiSrkHalikfdkg...........sgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 + iGR+ +  d+  ++psiS++Ha+i+f+ +           + k yl+Dl S nGt +N+ +++ +++ eLk++d +++G
  CCE29435.1 209 WLIGREtAVVDLPAEHPSISKQHAVIQFRYTekrneygdrigRVKPYLIDLESANGTILNHDKVPDSRYLELKDKDMFQFG 289
                 68****777888888***********99888899**********************************************8 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0003       1.8      18      83 ..     208     290 ..     191     296 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0003
                   EEEEES-TT.-SEE---TTS-TT-EEEEEETTEEE.............EEE-CESS--EETTEE-SECC...--TTSEEEETT CS
  Yop-YscD_cpl  18 evviGsded.cDivLsDkevsrkhlkLeveeesvr.............ledlgsrngllvngerveele...lrpgdvlelGt 83 
                    ++iG++    D+  + +++s++h++++++ ++ r             l dl+s ng+++n+ +v ++    l+++d ++ G 
    CCE29435.1 208 CWLIGRETAvVDLPAEHPSISKQHAVIQFRYTEKRneygdrigrvkpyLIDLESANGTILNHDKVPDSRyleLKDKDMFQFGH 290
                   566777766677777777777777777655322211111111122222778999*******9999855555689999888886 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.5   0.00099       5.9     243     299 ..      25      81 ..       2     204 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00099
  Presenilin 243 kkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseess 299
                 +++++++++ + +++++++s++++++ses +++++++++++++ + ++++++++++ 
  CCE29435.1  25 NDSRSSRKALDGSRTDRHTSHDRRRRSESPARHRRHQHREDERRRGPDRSSARDSRG 81 
                 111111111111111111111111111111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2461.87
//
Query:       CCE29436.1  [L=389]
Description: uncharacterized protein CPUR_03129 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-05   24.6   0.0    2.7e-05   23.8   0.0    1.4  1  DUF676         Putative serine esterase (DUF676)
    0.00018   22.2   0.0    0.00031   21.4   0.0    1.6  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.039   13.7   0.1      0.084   12.6   0.0    1.5  1  PGAP1          PGAP1-like protein


Domain annotation for each model (and alignments):
>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   4.5e-09   2.7e-05       8     140 ..      20     167 ..      16     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 4.5e-09
      DUF676   8 vVlvHGlqgn.............saDl..elikeqlekikeklpeekieflmsennesktfkgidvlgerlaeevlevvkkkkdknkkiSfvghSlGgl 91 
                 +VlvHGl+g              +aDl  +++k +  +i       +  + + +n +s + + i+  ++ l++ +  + k++    + i  v hSlGg+
  CCE29436.1  20 IVLVHGLNGDpqktwtasngcfwPADLlpKALKGAHANI--LTYGYNADVYSRKNDRSASDNYIHQHAQTLVTNLTMFRKSEGTFRNPIIWVSHSLGGI 116
                 79********96666666655555554443333333332..123458899999999999***************99888877777889*********** PP

      DUF676  92 iaraaiaklkekem.....tlkeaikglepvtfitlasPhLGvlysskslinlg 140
                  ++ ai + ++ +      ++      +  + +i l +Ph G+   +  l++ g
  CCE29436.1 117 LVKRAILYSNDVKAthhedYR---SIFISTYGLIFLGTPHAGSDAATWGLMLQG 167
                 *********999984432212...23467777899******9977776666655 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.2e-08   0.00031       1     128 [.      20     181 ..      20     326 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 5.2e-08
                    EEEE--GC..............GCHHHHHHHHCCTCEEEEE--TTST.......S-GGCS--HHHCHHHHHHHCCTT.........TTSEEEEEET CS
  Abhydrolase_6   1 vlllHGagss.........assWlvapLaallaagvhvlapDlpGhG.......rsdpppldledladlaalldelaa.......gggpvvlvGHS 73 
                    ++l+HG+ ++         +  W ++ L ++l + ++++ + + G+         + ++ +++   ++   l++ l +        ++p++ v HS
     CCE29436.1  20 IVLVHGLNGDpqktwtasnGCFWPADLLPKALKGAHANI-LTY-GYNadvysrkNDRSASDNYIH-QHAQTLVTNLTMfrksegtFRNPIIWVSHS 112
                    8*****443342222223244454556655555554333.555.553334333233444455522.444778888888888999999999****** PP

                    CHHHHHHHHHHCC...........EEEEES-......----TTT.S----TTHHHHHHTT-C.CCCHCCH CS
  Abhydrolase_6  74 lGGalalaaapla.........lvvgvlldppp....talpagl.laaalelllallallrl.lawlsre 128
                    lGG+l+ +a  +          + +++++++++    +++ a    aa + l+l+ +a ++   +++ +e
     CCE29436.1 113 LGGILVKRAILYSndvkathheDYRSIFISTYGliflGTPHA-GsDAATWGLMLQGMADAIMpRRFFETE 181
                    ****77773333366666666566668888866544322222.235555555554444222213444332 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.4e-05     0.084       8     132 ..      21     156 ..      16     166 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
       PGAP1   8 lFvpGnagsykqvrslAseaaeayqelrkllknqnkkeldfftvdfneelsaldGrtlldqaeylndaIkyI...lsly.sssekeptsviliGHSmGG 102
                 ++v+G+ g  +     ++ +   ++  + l k  ++++ + +t+ +n ++   +    +   +y+++  +++   l ++ +s+ +  + +i + HS+GG
  CCE29436.1  21 VLVHGLNGDPQKTWTASNGC---FWPADLLPKALKGAHANILTYGYNADVYSRKNDR-SASDNYIHQHAQTLvtnLTMFrKSEGTFRNPIIWVSHSLGG 115
                 55666655554444433333...5555555555555566666666666654443222.2234566555444311144445666677888********** PP

       PGAP1 103 ivaraaltlkn.........yikqsvnt..iltlasPhalp 132
                 i+ + a+ + n         y+   ++t  ++ l++Pha +
  CCE29436.1 116 ILVKRAILYSNdvkathhedYRSIFISTygLIFLGTPHAGS 156
                 99888888777677776666444445543378888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2868.29
//
Query:       CCE29437.1  [L=317]
Description: related to 2,5-diketo-D-gluconic acid reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-49  167.5   0.1    7.2e-47  160.0   0.1    2.1  1  Aldo_ket_red  Aldo/keto reductase family
    6.3e-05   23.1   0.1       0.11   12.7   0.0    2.7  3  Death         Death domain
  ------ inclusion threshold ------
      0.037   14.1   0.1      0.081   13.0   0.1    1.6  1  LysM          LysM domain
      0.059   13.0   0.4       0.18   11.5   0.0    1.8  2  DUF3251       Protein of unknown function (DUF3251)


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.1   1.6e-50   7.2e-47      16     292 ..      64     302 ..      54     304 .. 0.94

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 1.6e-50
                   -HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHH....HHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE- CS
  Aldo_ket_red  16 skeealellrraleaGinffDtAevYgkgqseellGe....alkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllH 108
                   + +e  +++ +aleaG++++D+A  Y    +ee  G+    +l+k + +reev++++K+      +++++  e   ++l  sl++Lg+dy+Dl+l+H
    CCE29437.1  64 NGQETEDAVTAALEAGYRHIDSAARY---ANEEACGRairgWLQKTGTPREEVFVCSKL------WDADHGYEATFQALCSSLEKLGLDYLDLYLIH 151
                   55788999******************...9999999944445555**************......******************************** PP

                   S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS-- CS
  Aldo_ket_red 109 rpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGlltgkyqsee 205
                    p  +  +++e ++ale  ++ Gk+++iGvSnf ++++e++++ + v ++++qve +++   + e l+ lc+k+g+++ ayspl++G          
    CCE29437.1 152 SPAEDEQKRLESWRALETAQRLGKVKSIGVSNFGAAHIENLLENATVVPAVNQVEVHPF--CQREALVALCNKHGIKIEAYSPLARGN--------- 237
                   ***********************************************************..999*********************763......... PP

                   -SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 206 dkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                                        + +++++++a++++++ aq+ l++     ++++v+p++ ++++++ nl++++++ls+e+va++++l
    CCE29437.1 238 --------------------KLEDPTIKAIAEKYNKTTAQILLNWNA--ARGNVVLPKSLTASRIQSNLESFDFTLSPEDVAAINAL 302
                   ....................257899*********************..9**********************************986 PP

>> Death  Death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.9   8.4e+03      32      58 ..      83     107 ..      75     113 .. 0.70
   2 !   12.7   0.0   2.4e-05      0.11      51      77 ..     118     144 ..     118     148 .. 0.93
   3 !    7.2   0.0    0.0012       5.5      18      56 ..     230     265 ..     220     279 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.9
                 HHHHHHSSSTHHHHHHHHHHHHHHHHT CS
       Death  32 idriekennslrsqsyalLqlWedreg 58 
                 id++++      +++    + W +++g
  CCE29437.1  83 IDSAARYA--NEEACGRAIRGWLQKTG 107
                 56666655..77888888888998877 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.4e-05
                 HHHHHHHTTTCSHHHHHHHHHHTTHHH CS
       Death  51 qlWedregenatvgtLleaLrklgrdd 77 
                 +lW +++g +at++ L++ L+klg+d 
  CCE29437.1 118 KLWDADHGYEATFQALCSSLEKLGLDY 144
                 58**********************985 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0012
                 HHHHHHHTTSHHHHHHHHHHSSSTHHHHHHHHHHHHHHH CS
       Death  18 WkelarkLglseeeidriekennslrsqsyalLqlWedr 56 
                 +  lar  +l + +i+ i++++   ++ + ++L +W + 
  CCE29437.1 230 YSPLARGNKLEDPTIKAIAEKY---NKTTAQILLNWNAA 265
                 5679******************...99999999999874 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.8e-05     0.081       8      29 ..     243     269 ..     238     281 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.8e-05
                 -HHHHHHHC.TCHHHHHHHHC....TC CS
        LysM   8 TLwsIAkry.gitveklleaN....nl 29 
                 T+ +IA +y ++t + ll++N    n+
  CCE29437.1 243 TIKAIAEKYnKTTAQILLNWNaargNV 269
                 999******************665544 PP

>> DUF3251  Protein of unknown function (DUF3251)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       0.3   1.4e+03     113     155 ..      21      65 ..      13      74 .. 0.66
   2 ?   11.5   0.0   3.9e-05      0.18      20      68 ..     243     291 ..     234     304 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.3
                 EEEEEEEEEEE----SS.S-EEEEEEE.E-S--GGG--EEEEEEE CS
     DUF3251 113 evnvqsqlfsapaslla.psdvqielr.LkgvspeqlGfvRvhdi 155
                  vn+q q+ s + sl + +s ++i+l+  ++++   lG  +  + 
  CCE29437.1  21 VVNAQRQSRSHSSSLSSvKSVASIKLNdGNSIPQVALGVYKAPNG 65 
                 578899988888888643677788875246777777776555555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.9e-05
                 ------HHHHHHHHHHHHHHH-SSSEEE-TTT---EEEE-SS-EEEEEE CS
     DUF3251  20 elktleqetvkieqqnaLnakskkgvyLlPgaktparlesqiGrlrvsl 68 
                  +k + ++  k + q  Ln ++++g  +lP + t +r++s++     +l
  CCE29437.1 243 TIKAIAEKYNKTTAQILLNWNAARGNVVLPKSLTASRIQSNLESFDFTL 291
                 5788999999******************************998776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2391.58
//
Query:       CCE29438.1  [L=572]
Description: related to general amino acid permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.6e-104  350.2  48.8   1.9e-104  349.9  48.8    1.0  1  AA_permease    Amino acid permease
    9.2e-28   97.2  49.7    1.3e-27   96.8  49.7    1.0  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.9  48.8  2.2e-108  1.9e-104       1     474 [.      89     548 ..      89     552 .. 0.97

  Alignments for each domain:
  == domain 1  score: 349.9 bits;  conditional E-value: 2.2e-108
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+ +  ++g+iGtglf+glg++++ aGp+gall+y+ +g+v+ +v  +lge+a + p++g+f   a+  ++p++Gf+iG+n+++  i+ ++ e+ta+ 
   CCE29438.1  89 HLSMLGIAGAIGTGLFLGLGSAVARAGPAGALLGYATIGLVVCAVQFALGEVAALLPVTGAFVRHAEFLVDPAWGFAIGWNLVYGNILSIPSEITAIC 186
                  899*********************************************************************************************** PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                   l+q+w  +t +p   v+++vf+++ +++ +  v ++ge+ef++a++ki+ ++ +ii+g ++  gg p   a  fr++ d+g  f ++l +g    + 
   CCE29438.1 187 VLFQMW--TTINP--AVWIVVFILLTFLVGMSLVQLFGEVEFVFAVLKILLVVFLIILGLVIDLGGVPGTPAvYFRYWRDPGP-FVEYLADG----SW 275
                  ******..66666..9*******************************************99999999998889**********.66666666....99 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlapli 292
                  g+f++  sv+  +vf+f+Gie++a++++E+k+P+++iPka ++v+iri++fY l++l++g+lv  +d+ l  d  ++  spfvi+ + +g++++++++
   CCE29438.1 276 GRFLGYWSVMTGAVFSFAGIESIAMAGAETKNPRRAIPKACKNVFIRIILFYMLAILIVGMLVRSDDPRLQGDGSTTaQSPFVIAASAAGLPAVPSVV 373
                  9**********************************************************************99887779******************* PP

  AA_permease 293 naviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrf 390
                  na+++t+a+ss+n sl +++Rvly la  + aP+++ + + +gvP++ ++++m+ s+l+++  s n++  +vf +l++++ +  li w++++++++r+
   CCE29438.1 374 NAIVITSAWSSSNQSLLAGTRVLYGLAVKKQAPSIFLRTTSWGVPYMCVFVFMAGSFLSFMSLSNNAI--TVFYWLVNLTSAGVLISWIAVLVNHIRL 469
                  ************************************************************66666666..**************************** PP

  AA_permease 391 Rkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                  R a+k q + + +l+       + ++++l+++iiill+ +++ +++     ++w++++f++ayl ++l++  ++++k+ +k+k+
   CCE29438.1 470 RLAMKQQAIPLTRLPWWNSWTLYSSYFALFMCIIILLTSGFTVFTK-----GNWSSSTFVSAYLDIPLVITAYFIWKYVKKTKI 548
                  **********************************************.....******************************987 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8  49.7   1.4e-31   1.3e-27       9     413 ..      93     519 ..      88     536 .. 0.76

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 1.4e-31
  AA_permease_2   9 lvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaasy 102
                    l i  +ig+g f     ++a +gpa +l +  ++++++ av +++ E++++lp  g  +  ++ +  + ++f  +w ++++ +++++s ++++   
     CCE29438.1  93 LGIAGAIGTGLFLGLgsAVARAGPAGALLGYATIGLVVCAVQFALGEVAALLPVTGAFVRHAEFLVDPAWGFAIGWNLVYGNILSIPSEITAICVL 188
                    556667999999877777888999966666655555557*********************************************998866555555 PP

  AA_permease_2 103 llnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.......stetdt...ffpngwp 188
                    ++ ++  ++++    +++ ++++++l++l+    ++  + + ++ ++lki l++++liilgl++  gg  +         + + +     +++g++
     CCE29438.1 189 FQMWT--TINP----AVW-IVVFILLTFLVGMSLVQLFGEVEFVFAVLKI-LLVVFLIILGLVIDLGG-VPGTpavyfryWRDPGPfveYLADGSW 275
                    55433..3333....333.45667888888899999999***********.699*********96554.443335676663333332334444666 PP

  AA_permease_2 189 g....vllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei......anlsnlgsvaalffeavggkvv 272
                    g    ++++++++++sf+G+es+a    e k+  + +pka+ ++++ ++++y+l  + + + v  d        +++    s++ + + a+g ++v
     CCE29438.1 276 GrflgYWSVMTGAVFSFAGIESIAMAGAETKNprRAIPKACKNVFIRIILFYMLAILIVGMLVRSDDPrlqgdgSTT--AQSPFVIAASAAGLPAV 369
                    54334599*********************8888467******************88888887776666466533222..3346999********** PP

  AA_permease_2 273 aiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgliisyllli 366
                     ++v+++++ s++ + n  +++ +rvl+ la  +  P+ f ++  +g p+ ++++++  s++ +  ++l++   + +++l++++s g++is+++++
     CCE29438.1 370 PSVVNAIVITSAWSSSNQSLLAGTRVLYGLAVKKQAPSIFLRTTSWGVPYMCVFVFMAGSFLSF--MSLSNnaITVFYWLVNLTSAGVLISWIAVL 463
                    ************************************************************6655..455555678999****************** PP

  AA_permease_2 367 igalilrkkrphl....kr...pgki.lvaiigalfllfllvalffppkgpa.tqs 413
                    +  + lr  ++++     r   +  + l +  +alf ++++ ++   ++  + ++s
     CCE29438.1 464 VNHIRLRLAMKQQaiplTRlpwWNSWtLYSSYFALFMCIIILLTSGFTVFTKgNWS 519
                    *******9999887766447645566334444455555555444444443332333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       962  (0.0536561); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 4154.22
//
Query:       CCE29439.1  [L=454]
Description: BTUB tubulin beta chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-72  241.9   0.0    1.3e-71  240.8   0.0    1.5  2  Tubulin          Tubulin/FtsZ family, GTPase domain
    4.5e-40  136.7   0.0    6.8e-40  136.1   0.0    1.3  1  Tubulin_C        Tubulin C-terminal domain
    5.5e-06   26.7   0.0    1.2e-05   25.6   0.0    1.6  1  Misat_Tub_SegII  Misato Segment II tubulin-like domain
    0.00057   19.2   0.1      0.065   12.4   0.0    2.2  2  Tubulin_2        Tubulin like
     0.0024   17.6   0.0     0.0042   16.8   0.0    1.4  1  Tubulin_3        Tubulin domain


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.8   0.0   3.7e-75   1.3e-71       1     197 []       3     212 ..       3     212 .. 0.99
   2 ?   -2.8   0.0       1.7   6.1e+03      69     112 ..     292     336 ..     285     342 .. 0.64

  Alignments for each domain:
  == domain 1  score: 240.8 bits;  conditional E-value: 3.7e-75
                 EEEEEEEHHHHHHHHHHHHH...HHHCH..............HHHT.....TTEEEEE....EEESBHHHHHTS-GS........EEEE--CCCCTTC- CS
     Tubulin   1 eiivigvGqcGnqignelwellakehgiqsdg..........dslesfFsesgkveyiprsvaidtdpqvlneikags..elfnpnklllgkegagnng 87 
                 ei++++vGqcGnq+g+++w++++ ehg++++g          d+++++F+e ++++y+pr+v++d++p ++++++ag+  +lf+p+++++g+++a+nn+
  CCE29439.1   3 EIVHLQVGQCGNQVGSAFWQNILGEHGLDNSGeyhgdnreqlDRINVYFNEASNKKYVPRAVLVDLEPGTMDAVRAGPlgRLFRPDNFVFGQSSAANNW 101
                 79**************************97779****************************************************************** PP

                 -TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--.GG.G-HHHHHHHHHHHHHHHHT-SEEE CS
     Tubulin  88 aggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs.efsevvvepynailalkelieesdavi 185
                 a+g+++ g+e+ ee+ + +r+e+e+cd lqgf+it+slgGGTGSG+g+++l++++ee+p++++ t++v+Ps + s+ vvepyn+ l++++l+e+sda++
  CCE29439.1 102 AKGHYTEGAELVEEVIDVVRREAESCDILQGFQITHSLGGGTGSGMGTLLLSKIREEFPDRMLATFSVYPSaQASDTVVEPYNTTLSIHQLVENSDATF 200
                 ************************************************************************999************************ PP

                 EEEHHHHHCCST CS
     Tubulin 186 vidNdaLlkiln 197
                 +idN+aL++i++
  CCE29439.1 201 CIDNQALYDICQ 212
                 **********96 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.7
                 .....EEEE--CCCCTTC--.TT-HHHHHHHHHHTHHHHHHHHTT CS
     Tubulin  69 elfnpnklllgkegagnnga.ggypevgkeaaeeileeirkevek 112
                 ++++p++++ +++  ++ +   + +  gk   +e+++++rk+ +k
  CCE29439.1 292 QMLDPRNMMAQSDFRNGRFLtCSAMFRGKISGKEVEDQMRKTQDK 336
                 588888888888777777763333444777777777777776665 PP

>> Tubulin_C  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.1   0.0   1.9e-43   6.8e-40       1     124 [.     261     381 ..     261     383 .. 0.99

  Alignments for each domain:
  == domain 1  score: 136.1 bits;  conditional E-value: 1.9e-43
                 TTC-EEEEEEESSSCTTTTTCS-HHHHHHHHHTCSGGGBSSSTSTTTSSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTSTTTEEEEEEECECT CS
   Tubulin_C   1 PrlhFlltsyaPlvsaekaavektsvqdvtrallepknimvkvdprkgkylaiallirGdvepkevnkavqrikekkkaqfveWiptgikvalnkkspy 99 
                 PrlhF+++++aPl+s+ ++++++ +v+d+t+++l+p+n+m+++d r+g++l++++++rG+++ kev++++++ ++k++++fv+Wip+++++++++++p+
  CCE29439.1 261 PRLHFFMVGFAPLTSRGSHSFRSVTVADLTQQMLDPRNMMAQSDFRNGRFLTCSAMFRGKISGKEVEDQMRKTQDKNSSYFVDWIPNNVQTSMCEVPPK 359
                 9************************************************************************************************** PP

                 -TTTSSCEEEEEEEEGGGHHHHHHH CS
   Tubulin_C 100 vkkqskvsvlmlaNttsiaelfkrl 124
                 + k+s    ++++N+t+i+++fkr+
  CCE29439.1 360 GLKMS---STFIGNSTAIQDIFKRV 381
                 ***99...9**************98 PP

>> Misat_Tub_SegII  Misato Segment II tubulin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.4e-09   1.2e-05       2      69 ..       3      72 ..       2     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.4e-09
  Misat_Tub_SegII  2 EivtlqlGnyaNyvgtHfW.Nt.Qesyf....tydeeeeesevdhdvlfregetkqgqvtytPRllivDlkgsl 69
                     Eiv lq+G+  N vg+ fW N+  e+ +    +y+ ++  +++d+   +++      + +y+PR+++vDl+ ++
       CCE29439.1  3 EIVHLQVGQCGNQVGSAFWqNIlGEHGLdnsgEYHGDNR-EQLDRINVYFNE---ASNKKYVPRAVLVDLEPGT 72
                     9******************66525666743334444444.899988888874...45789*********98655 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.8e-05     0.065     139     189 ..     113     164 ..      97     185 .. 0.72
   2 !    4.5   0.0    0.0047        17      37     105 ..     286     349 ..     273     356 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.8e-05
   Tubulin_2 139 lrdaikrlrgsage.eeglnvfVvgSLaGGTGSGiflDvayllrkilkeekq 189
                 ++++i+ +r++a++ + +  + +  SL GGTGSG+   ++  +r+++++   
  CCE29439.1 113 VEEVIDVVRREAEScDILQGFQITHSLGGGTGSGMGTLLLSKIREEFPDRML 164
                 5566666666534433334456999**********99999999999998764 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0047
   Tubulin_2  37 yiDtdeneknrlkdatdetaekageslksrekealsissaevdrilrnllreetasaypsieeWlppel 105
                 ++D +++++++++   ++ + + g+ l++++++  +is +ev++ +r++++++ +    +  +W+p++ 
  CCE29439.1 286 VADLTQQMLDPRNMMAQSDF-RNGRFLTCSAMFRGKISGKEVEDQMRKTQDKNSS----YFVDWIPNNV 349
                 78999999999876666666.79999***********************777644....6789997764 PP

>> Tubulin_3  Tubulin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.2e-06    0.0042      64     152 ..     120     202 ..      99     244 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.2e-06
   Tubulin_3  64 lrpfaeecdqlrglqvftgvddaWG.GfaakylerlrdeygkksilvWvlaleeklkkkkkaklerklkklnkarslkelseqaslyvPi 152
                 +r  ae cd l+g+q+  +     G G ++  l ++r+e++ + + ++ +  + ++   +    +  ++  n++ s+++l e++ + + i
  CCE29439.1 120 VRREAESCDILQGFQITHSLGGGTGsGMGTLLLSKIREEFPDRMLATFSVYPSAQA---S----DTVVEPYNTTLSIHQLVENSDATFCI 202
                 68889**************99887769***************99876654332222...2....23455677888888887776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3583.52
//
Query:       CCE29440.1  [L=649]
Description: uncharacterized protein CPUR_03133 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-06   27.0   5.9    3.5e-06   27.0   5.9    1.6  2  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
    5.3e-06   25.7   0.3    1.4e-05   24.3   0.1    1.7  2  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   5.9   3.9e-10   3.5e-06       1      37 [.      29      66 ..      29      69 .. 0.88
   2 ?   -3.9   0.1       1.8   1.6e+04      28      36 ..     180     188 ..     178     190 .. 0.56

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 3.9e-10
                SS-HHHHHCT---ST..SSSS-HHHHHCTHHHCCCCTCC CS
     Zn_clus  1 haCdnCrkkKvKCda..kkPaCsnCkklnleCtfysess 37
                +aC+ C  +K+KC    + ++C++C++l+  C   ++s 
  CCE29440.1 29 RACQACQHRKIKCGLepGDEQCARCIRLGIRCI-VNKSL 66
                69*************888888***********9.66555 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.8
                 HHHCCCCTC CS
     Zn_clus  28 leCtfyses 36 
                  +Ct  ++s
  CCE29440.1 180 DPCTRMRRS 188
                 567655544 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   1.5e-09   1.4e-05     110     181 ..     299     364 ..     290     375 .. 0.84
   2 ?   -3.1   0.0      0.34     3e+03      37      85 ..     512     560 ..     510     568 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.5e-09
  Fungal_trans 110 ralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqi 181
                    +l +r++g+av +a++l Lh+  +   ++    ++e  +e+  Rlw++ ++ D ++++ +Grp++++ ++i
    CCE29440.1 299 SDLSWRLLGLAVIIATELNLHQFCAMALSD----RTEYVEEA--RLWYFLYVCDQHFSIAYGRPSFFSQDSI 364
                   5799***********************953....66666666..*********************6555544 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.34
  Fungal_trans  37 pllllailalGalfsesetkesnssltsesqefiafplraeilihedfs 85 
                   pl ll+ +a ++lf+ +++ +  s   + ++e +a  ++   +++e+ s
    CCE29440.1 512 PLYLLTTIAFACLFLMKAQTQWRSANLNIRYESVAAIIEGIVVLLEETS 560
                   5678999999999999999887777777666666555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      700  (0.0390429); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4663.12
//
Query:       CCE29441.1  [L=633]
Description: uncharacterized protein CPUR_03134 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4718.22
//
Query:       CCE29442.1  [L=957]
Description: uncharacterized protein CPUR_03135 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-09   35.3   7.5    2.7e-08   33.9   7.5    1.8  1  Cnn_1N    Centrosomin N-terminal motif 1


Domain annotation for each model (and alignments):
>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   7.5   1.5e-12   2.7e-08       2      69 ..     163     229 ..     162     249 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.5e-12
      Cnn_1N   2 lrEqeeqidkLkKENFdLKLriyfLeerleklseeqkeellkenielkveveslqkelkekkkllrea 69 
                 ++E+e++i++L+K NFdLKL++y+ +er++ l+    ++l++    +++ +  l  el++++k ++ea
  CCE29442.1 163 VKEMEQVISTLHKQNFDLKLELYHRRERQNTLEA-RLDSLENDKARMEDVNDRLLIELEKRDKAVEEA 229
                 69******************************99.788888888888888888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 6433.04
//
Query:       CCE29443.1  [L=543]
Description: uncharacterized protein CPUR_03136 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-19   69.1   0.9      3e-18   66.6   0.0    2.4  2  PRKCSH    Glucosidase II beta subunit-like protein
  ------ inclusion threshold ------
      0.056   13.7   0.0        2.5    8.4   0.0    2.4  2  BEN       BEN domain


Domain annotation for each model (and alignments):
>> PRKCSH  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   3.3e-22     3e-18       2      81 .]     154     250 ..     153     250 .. 0.83
   2 ?   -0.1   0.4      0.21   1.9e+03      32      78 ..     468     540 ..     458     542 .. 0.57

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 3.3e-22
                 -EEEEEETTEEEEEETTTEEEEE-E.........ETTEE-S--EEEEEE...........EEEEEEE-------..............---S--EEEEE CS
      PRKCSH   2 kCvsskegwwtYelCygkkvrQfhe.........pekekgksevvLGrf.........nkeehsewaekneaks.........ystedeekqsnryisl 73 
                 +C+++ +gww+Y++C +++++Qfh+         p+++++++e+vLG++          + ++          +         +++e + k++++y+++
  CCE29443.1 154 SCLYYASGWWSYSFCKNREITQFHAisvsahnqvPKRDPNGQEYVLGQVpslpattedRQLNK----------RrnddvdaapPRAELQIKDDQPYLVQ 242
                 8**********************************************9988886653212222..........012222445699************** PP

                 EEEE-SB- CS
      PRKCSH  74 kyenGtkC 81 
                 ++e+Gt+C
  CCE29443.1 243 RLEGGTIC 250
                 ******** PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.21
                 -S--EEEEEE................EEEEEEE-------.................---S--EEEEEEEEE- CS
      PRKCSH  32 gksevvLGrf..............nkeehsewaekneaks............ystedeekqsnryislkyenG 78 
                 ++++ +LG +               k+++ + a++++++              + e+  k+ +  ++  + +G
  CCE29443.1 468 EDEKELLGYIdepeagiggagskgRKAKQGKKAKQDTDDDgrdssasgegkdGKPEEGNKGGQEGSEEQFYHG 540
                 5566677766777777776666665555555555555555666555555555444555555555555555555 PP

>> BEN  BEN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.016   1.4e+02      19      55 ..     250     287 ..     240     295 .. 0.78
   2 ?    8.4   0.0   0.00028       2.5      20      63 ..     418     470 ..     398     479 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.016
                 EESS----GGGTT..---EE--HHHHHHHHHHHHHHH-- CS
         BEN  19 ssvtGkrsrafkr..ppkkaLDpnklsaIrnyveeryps 55 
                 + +tGk +       +  ++LD +++  I+++v+  y +
  CCE29443.1 250 CDLTGKER-TVEVqyQCVPGLDHDRIGWIKEVVTCSYIM 287
                 77788733.2222578899**************988877 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00028
                 ESS----GGGTT..---EE--HHHHHHHHHHHHHHH--............... CS
         BEN  20 svtGkrsrafkr..ppkkaLDpnklsaIrnyveeryps.......ekededww 63 
                 ++ G + +  ++    k ++Dp+ +  +r+++++  ++        + +e ++
  CCE29443.1 418 KADGGKTQELTTeeLEKLQIDPKAVAEMREKLKKLAGDsgwkmeiFQMNEEDE 470
                 4444444444445899******************9998555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4082.52
//
Query:       CCE29444.1  [L=310]
Description: uncharacterized protein CPUR_03137 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.36   11.4   0.1       0.36   11.4   0.1    1.9  2  zf-C2H2   Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.5         1   1.8e+04       1       6 [.     201     206 ..     201     206 .. 0.83
   2 ?   11.4   0.1     2e-05      0.36       1      23 []     237     262 ..     237     262 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1
                 EEETTT CS
     zf-C2H2   1 ykCpdC 6  
                 y Cp C
  CCE29444.1 201 YICPAC 206
                 789988 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 2e-05
                 EEETTTT..EEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCg..ksFkrksnLkrHirt.H 23 
                 y+C++C   k ++r++n  +H+rt H
  CCE29444.1 237 YECKVCArgKIYNRRDNAAAHLRTgH 262
                 89****999***************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2507.66
//
Query:       CCE29445.1  [L=331]
Description: uncharacterized protein CPUR_03138 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   15.3   9.7      0.025   15.1   2.2    3.0  3  zf-C2H2    Zinc finger, C2H2 type
        2.3    9.3  12.2       0.57   11.2   1.9    3.0  3  zf-C2H2_4  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         2   1.8e+04      10      16 ..      61      67 ..      60      68 .. 0.83
   2 ?   15.1   2.2   2.7e-06     0.025       2      23 .]     196     218 ..     195     218 .. 0.94
   3 ?    4.3   0.3    0.0069        62       2      23 .]     248     271 ..     247     273 .. 0.75

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2
                ESSHHHH CS
     zf-C2H2 10 FkrksnL 16
                F+r+++L
  CCE29445.1 61 FNRSEDL 67
                9999998 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.7e-06
                 EETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                 +C dC +sF+ +++L+rH++  H
  CCE29445.1 196 RCFDCEESFRGNHELERHRKAkH 218
                 7******************9877 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0069
                 EETTTT..EEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCpdCg..ksFkrksnLkrHirtH 23 
                 +C++C+  k ++  +n   H+r+H
  CCE29445.1 248 ECKVCTmgKEYNKDYNAGEHLRKH 271
                 699***997777777777777766 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.9   6.3e-05      0.57       2      24 .]     196     218 ..     195     218 .. 0.95
   2 ?   -3.3   0.2         2   1.8e+04       6      13 ..     221     228 ..     220     229 .. 0.75
   3 ?    4.9   0.2    0.0064        58       2      23 ..     248     271 ..     247     275 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.3e-05
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkthH 24 
                 +C  C +sF+ +++L rH k+ H
  CCE29445.1 196 RCFDCEESFRGNHELERHRKAKH 218
                 7999*****************99 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2
   zf-C2H2_4   6 CgksFssk 13 
                 C k+F ++
  CCE29445.1 221 CVKRFVCR 228
                 88888775 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0064
   zf-C2H2_4   2 kCpiC..gksFs.skkaLlrHlkth 23 
                 +C++C  gk ++ +++a   Hl++h
  CCE29445.1 248 ECKVCtmGKEYNkDYNA-GEHLRKH 271
                 6****999999844444.5566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2388.47
//
Query:       CCE29446.1  [L=799]
Description: uncharacterized protein CPUR_03139 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-36  125.0   8.1    2.6e-36  125.0   8.1    3.8  3  ADIP      Afadin- and alpha -actinin-Binding


Domain annotation for each model (and alignments):
>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   8.1   1.5e-40   2.6e-36       1     152 []       8     164 ..       8     164 .. 0.99
   2 ?   -1.1   0.1     0.098   1.8e+03      60      94 ..     636     670 ..     628     684 .. 0.72
   3 ?   -0.8   1.8     0.083   1.5e+03     101     124 ..     733     754 ..     709     780 .. 0.55

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 1.5e-40
        ADIP   1 enaikyINstLlsrGylrskllfdta.....tekveeniaaiinviysLlqardrdleqreslnetirkleaeierlqskierlktqleqlerelalvq 94 
                 ++a+ yIN++LlsrG+lr+++++d+a     +e+++    +ii ++++L+ +rdrd+eqresl+  +r+l+ae+ +l+ +  rl+++ ++ +r+++l++
  CCE29446.1   8 RTASLYINNQLLSRGLLRDGDTIDFAgtwlrDEEDAAVSGRIISLLNDLILRRDRDAEQRESLSMSMRSLRAENLKLTDDLARLHEKHTDARRKADLAT 106
                 689************************************************************************************************ PP

        ADIP  95 akerqlekklktleqklknekeelqrlknalqqiktqyahelkkkdreiekLkeklke 152
                 a+e + +++lk++e++++ +ke+++r+k+ ++q++ +++ e++++dr+i++Lk++l+e
  CCE29446.1 107 AAESTFKTQLKSAEAHARALKEDAARMKSLVAQTRSSCTMEIRRRDRQIDTLKKQLGE 164
                 *******************************************************976 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.098
        ADIP  60 etirkleaeierlqskierlktqleqlerelalvq 94 
                 +t r+ ea+ ++   +++   ++l+++ere++++ 
  CCE29446.1 636 RTPRNVEATVAQSPPAMSTIAAKLAASEREADAAR 670
                 56677888888888888889999999999988543 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.083
        ADIP 101 ekklktleqklknekeelqrlkna 124
                 e ++++++q+  + kee +r  ++
  CCE29446.1 733 ELQQQDQQQH--ENKEEEEREIKT 754
                 2222222222..222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2304  (0.128507); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:00.51
# Mc/sec: 4686.26
//
Query:       CCE29447.1  [L=308]
Description: uncharacterized protein CPUR_03140 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-29  102.8  13.2    2.4e-29  101.9  13.2    1.5  1  RRP7      Ribosomal RNA-processing protein 7 (RRP7) C-termina
    1.8e-12   47.4   0.0    5.4e-12   45.8   0.0    1.7  1  RRM_Rrp7  Rrp7 RRM-like N-terminal domain


Domain annotation for each model (and alignments):
>> RRP7  Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9  13.2   2.7e-33   2.4e-29       2     118 ..     187     306 ..     186     307 .. 0.89

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 2.7e-33
        RRP7   2 ksrpseeelqeevdeymeefdkeeeeekkeekkkeeevDeDGfvtVtrgkkaaa..keeaaeekakkkekkkkkkkelldFYrFQirekkkeelaeLrk 98 
                  sr++++++q+ v++++++f+++e+e+ + +k+ ++e+DeDGfvtVtrg++aa+  ++ea+e+k++   k++kkk+el +FYrFQ re++k+e+a L++
  CCE29447.1 187 LSRVDKAATQKGVHAFFNAFNRKEKEAVELAKRLRNEPDEDGFVTVTRGGRAAPasRNEAEEAKQRMVDKAEKKKSELTNFYRFQLREERKKEQAALLR 285
                 578999******************************************8877665566655666666677777777888******************** PP

        RRP7  99 kFeeDkekieelkekr.kfkp 118
                 +F++D++k+  +++kr  fkp
  CCE29447.1 286 RFQDDRRKVDAMRQKRgHFKP 306
                 ****************99998 PP

>> RRM_Rrp7  Rrp7 RRM-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0     6e-16   5.4e-12       5     149 ..       6     169 ..       3     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 6e-16
    RRM_Rrp7   5 FlvlPlkLpkskklknkatHYlylkkHqtknndeessrslFlvNlPiettletlkkffqkvalgatiesvvsslltdeqedvs....idltkltsdlel 99 
                 F vlP+++p  ++ +++a+H + +++  +k +  ++srslFl N+P  +t  +++  f     ++++e++   ++ de ++      ++ tk     ++
  CCE29447.1   6 FAVLPIRMPSMPSFPHSAIHEVRVRQNAPKVPTVNDSRSLFLKNIPSDSTEPHFRAVFTSLVGAGKFETI---IFDDEAKTAFptdpAQATKVQGYAKK 101
                 99***********************************************************999999999...66666665432111344444333333 PP

    RRM_Rrp7 100 kdeekdeeeakl..................PkntglvkfvDkssvelafnalkKlsksstkkeWeldk 149
                 ++  + e e++l                     t++v + D++sv+l+ +a+ K+ k ++  +W  + 
  CCE29447.1 102 RKMLDVEAEERLreakesqlpqiwtrqlhrSSSTAVVLLADEKSVQLVRKAIAKVHKTKKYPVWGENL 169
                 33333344444477888899*********999********************************8754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1313  (0.0732333); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2228.88
//
Query:       CCE29448.1  [L=373]
Description: uncharacterized protein CPUR_03141 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-89  298.8   3.7    2.9e-89  298.5   3.7    1.0  1  DUF92     Integral membrane protein DUF92


Domain annotation for each model (and alignments):
>> DUF92  Integral membrane protein DUF92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.5   3.7   1.6e-93   2.9e-89       2     236 .]      37     352 ..      36     352 .. 0.97

  Alignments for each domain:
  == domain 1  score: 298.5 bits;  conditional E-value: 1.6e-93
       DUF92   2 ltlllalralrkksLtpsGalaavlvgvlialaplgllffllllvFfllgslltkvkkkvKakleeekega......RdavqVlanslvalllally.. 92 
                 ltl+l+lra  k+sLtp+G++aa+l+++++a++p++ l+f+ll+vFfl+g+++t++k++vKa+l+++++g+      R++vqV+ansl+a++l+l++  
  CCE29448.1  37 LTLALVLRARAKNSLTPAGLFAATLTAIAHAYHPWN-LPFVLLCVFFLAGTRVTHIKENVKATLTQSSKGTsggegpRTHVQVFANSLMASILTLAHgy 134
                 799*********************************.7*****************************9766677788********************** PP

       DUF92  93 ...................lasdlllvgivasyAavaaDTlaSElGkilskskprlittl..kkvppGtnGgVsllGllasllGalliallavllllle 170
                                    +++dll+vgi+a+yAavaaDT++SElG ils+s+prlit+l  +kvppGtnGgV+llGl+a++lG+++i+++++++l+++
  CCE29448.1 135 qlrtrmaatpnpersmcysWGGDLLVVGIIANYAAVAADTFSSELG-ILSTSQPRLITSLtlRKVPPGTNGGVTLLGLAAGFLGSMVIVVASMVFLPTC 232
                 ***************999877*************************.999********6666************************************* PP

       DUF92 171 l............lillltlaGllGsllDSlLGatlqasvvdkrtgkvvegegge..........................................kv 215
                 +            ++l ++++G+lGs+lDS+LGa+lq+sv+d r+g++vegegg+                                           v
  CCE29448.1 233 TggeawtlaqrrtFMLGMVVWGALGSVLDSVLGAVLQRSVRDVRSGRIVEGEGGSrvlvsapaagrapaggendesedgknkdtpgnssvgdrrpsrMV 331
                 ************99999************************************99******************************************99 PP

       DUF92 216 vsGldlLdNnaVNllsallta 236
                 +sG+d+LdNn+VN+l+a +++
  CCE29448.1 332 ESGWDILDNNDVNFLMASTMS 352
                 *****************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2780.88
//
Query:       CCE29449.1  [L=533]
Description: probable serine-type carboxypeptidase f precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-80  272.1   0.0    1.7e-80  271.5   0.0    1.2  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.5   0.0   9.3e-85   1.7e-80      10     414 ..      65     499 ..      57     503 .. 0.82

  Alignments for each domain:
  == domain 1  score: 271.5 bits;  conditional E-value: 9.3e-85
                    EEEEEEEECS..TTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STTSTT-EET CS
  Peptidase_S10  10 kqysGYldve..eeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvGvGFSysn 103
                    + y+G ++++  ++ + ++F+wf  s++  + +++v+WLnGGPGCsSl+Gll+E+GPf+++  +t k+++np+sWn+++n+l+++qP+ +GFS  +
     CCE29449.1  65 EAYAGQMSITpdANGTDKFFFWFQPSTNPAAAKEIVIWLNGGPGCSSLEGLLQENGPFSWQ-YGTFKPVQNPWSWNRLTNMLWVEQPISTGFSTGK 159
                    67888887765467889********************************************.678*****************************99 PP

                    TSSGS--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--SSTSEEEEEEEESE.-SBHHHHHCCHHHHH.HHT CS
  Peptidase_S10 104 tksdvktddeevaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekkkkinLkGlligNg.lideaeqvnsyvefa.yeh 197
                     +++   ++e++a++++ f+++f e+f      ++yitGESYaG+y P++a+++++++++    ++nLkG++++++ +id      ++v+f+ +++
     CCE29449.1 160 VTAT---SEEDAARQFLGFFRNFVETFSMQGF-KVYITGESYAGMYCPYIASAMIDAKDTT---HFNLKGMMVYDPeFIDGRVGEITIVPFVeHNR 248
                    9776...9*******************87665.9************************995...***********955788777778888551444 PP

                    TSSH..HHHHHHHHHHHEET..........................HHHHHHHHHHHHHHHHHHHHH....................HHHHCHCEE CS
  Peptidase_S10 198 glis..eeeyeslkkacekk..........................eeleqesekcanllekaskva....................vekenkgln 245
                    +l+   ++ ++ ++++  k                                               +                    ++  n +++
     CCE29449.1 249 NLMPlnDSFIQAIHETDRKCgyadvrekyltypargllpdplpgvdP-------------------KtgkplpgcgdyelstliqtaATAVNPCFD 325
                    44432144444444333222444777777777777777777766662...................033333333333333333333445677*** PP

                    TTETTSEETTSSEEHHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT--TTSSS--SB-HHHHHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT CS
  Peptidase_S10 246 vynileeccklkaelkksstdaqggedpydesyvekylnkkeVrkalhvnasvkkweecndsvfeqleddisksveeileellesglrvliynGdv 341
                    +y+i + c      +  +++   +g+  y ++ ++ y+n+++V++a++++  + +w++c++s     +d++  s+ +i+ ++++++ +v+i  G  
     CCE29449.1 326 IYQIATTC------PVLWDVLGFPGSFNYLPKGASIYFNRPDVKQAINAP-LDRNWSSCSSSSVFVDYDTSPWSSASIFGKVIDATKNVIIGHGTL 414
                    ********......67899*****************************97.558******955456688888999********************* PP

                    -STT-HHHHHHHHHHTECTTECCSCCCEEEE............TTTCESEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHH CS
  Peptidase_S10 342 Dlicnvlgteawikklelsgkkefrpwevsp............kkengqvaGyvkeyenltfltvkgaGHmvPedkpeealqlle 414
                    D++  +  t   i+++++ gk +f++  ++p            +  +  v G  ++ ++lt++ v  aGHmvP++ p++a++++e
     CCE29449.1 415 DFLFTTNTTLMAIQNMTFGGKLGFEKKPHEPfyvpyhqrgadsSIAGAGVFGTAHTERGLTYVGVSLAGHMVPQYAPSAAYRHVE 499
                    *****************************99******9887655556666777777799**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3793.48
//
Query:       CCE29450.1  [L=560]
Description: related to O-succinylhomoserine (thiol)-lyase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-29  100.7   0.0      8e-29  100.3   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    0.00015   21.0   0.0    0.00026   20.3   0.0    1.3  1  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.0     9e-33     8e-29      69     381 ..     204     537 ..     193     538 .. 0.83

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 9e-33
                      EEEEESSHHHHHHHH..HHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCT......TEEEEEEESS-TTTT--- CS
  Cys_Met_Meta_PP  69 aalavssGmaAiaaa..ilallkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaike......ntklvylEtptnpllkvv 154
                       ++++++GmaAi+ +  +l+  ++G+  v    ++  t++ll +  +    ++  v    l+e+e+ + e      ++    +E p+np+l+ +
       CCE29450.1 204 DVYLYPAGMAAIFETknVLEAYRKGKTNVELGMVFHNTHQLLLEESEGGWKHFAAVSGPGLDEFEEWLGEeagqgrEVAFAIVEIPGNPTLESP 297
                      578899*****9754338899999******************99999877788888887777877777664444446777889*********** PP

                      -HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHH.HHHHHHHT-B--HHHHHHHHHHHT CS
  Cys_Met_Meta_PP 155 DiekiaklakkagvlvvvDntfaspllqrplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkel.kflqnalGavlspfdawlllrGlk 247
                      D++++ kl  k g ++vvD t+ s  ++  l+  aD+ + S TK  +G+sd+++G +v +   +   +l +++ +a  + l + da +ll   +
       CCE29450.1 298 DLPRLKKLSEKYGFVMVVDETVGSFSNVDVLS-QADLLITSLTKSFNGRSDALGGSVVLNPLSSHYAQLsTRFSEAHHNQLFAADAQVLLSNSH 390
                      ************************99999987.7**********************99987555444441457788888999999999999999 PP

                      THHHHHHHHHHHHHHHHHHHHTS......TTEEEEE-TT.STTSTTHHHHHHHSS......SG-SEEEEEESSHHHHHHHHHHC-SSSEECSS- CS
  Cys_Met_Meta_PP 248 TLslRlerhqenAlkvAefLekh......pkvekvyYpg.lpshpqhelakkqlk......gaggvlsFelkseeekakkfvdnlklfslaesl 328
                          R +r ++nA+++AefL+k+        v +v+Yp+ lps+++++++k+  +      g+g +l+ e +s  +++++f d++     +  l
       CCE29450.1 391 DYFQRSQRLNANAQAMAEFLHKSmledddSPVVNVQYPSlLPSKENYDVWKRRSTpempspGYGCLLTVEFDSV-KTTRAFYDQCGFYP-SPHL 482
                      999*******************9777655489******9459*********98763333334556*******99.789******98765.5566 PP

                      SSSS-.EEEETTTTTTTTSCHHHH.HHTTS-TTEEEEE--SS-HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 329 Ggves.lielpasmthasipkeer.eaagvtddliRlsvGiEdvdDliaDlkqal 381
                      Gg  + +  ++++m  ++ ++ +r  ++g+ ++ +R+s G+E+++Dl++ l++al
       CCE29450.1 483 GGHVTiMFAYNMFMFGKDQEEARRlVDYGIREESVRISAGLEETQDLLDTLRDAL 537
                      6655505677777776666655552589***********************9998 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.9e-08   0.00026      49     292 ..     180     414 ..     172     436 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.9e-08
                    HHHHHHHHHC....TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHT.TT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHH CS
  Aminotran_1_2  49 leealakflg....rseklklkreaavvvgsGagaliealifllkln.pgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeeal 139
                    l+++++++l+    + + ++ k+ +  ++  G  a+ e+ + l  +   ++++ +   ++  ++  l+ s g +  ++    +  +  l+++ee l
     CCE29450.1 180 LRTRIIELLQhgaiDAQLVQCKPRDVYLYPAGMAAIFETKNVLEAYRkGKTNVELGMVFHNTHQLLLEESEGGWKHFA----AVSGPGLDEFEEWL 271
                    666667776666666667777777666666666666555444443330344577777778888888888888888888....556788999***** PP

                    TTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEE CS
  Aminotran_1_2 140 keapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilg 235
                     e + +  ++ + +ve p NPt   ++l+ l+kl    +ky+++ +vDe+ + f          +  +++   +l+ +sl K+f+     +G  ++
     CCE29450.1 272 GEEAGQGREVAFAIVEIPGNPTLESPDLPRLKKL---SEKYGFVMVVDETVGSFSN--------VDVLSQ-A-DLLITSLTKSFNGRSDALGGSVV 354
                    **999999**************************...************8555444........333444.3.48999******988888998899 PP

                    EHHHHHHHHHHHHHHTS..SHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 236 naavvsqlrklsrpfls..ssllqaava.aalsdallkqseleemrqrlqkrrkelrdeL 292
                       + s+ ++ls++f     ++l aa a   ls+++++ ++ +   +  q+++++l++++
     CCE29450.1 355 LNPLSSHYAQLSTRFSEahHNQLFAADAqVLLSNSHDYFQRSQRLNANAQAMAEFLHKSM 414
                    889999999999998885533333333303466666555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4225.76
//
Query:       CCE29451.1  [L=463]
Description: related to bifunctional 4-hydroxyphenylacetate degradation enzyme [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-23   83.0   0.2    1.7e-14   54.0   0.0    2.2  2  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   9.7e-19   1.7e-14       3      93 ..      79     163 ..      78     166 .. 0.90
   2 !   27.3   0.3   1.5e-10   2.6e-06     172     212 ..     166     206 ..     163     209 .. 0.95

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 9.7e-19
                    EEEEEE--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TTS.SSS-EE........EEEEEEEESS-B--T--HHHHHTTEEEEEEEEE CS
  FAA_hydrolase   3 vcdglnyaehvreagkaaeeppdrhiplepvfflkrasslvgpgdp.irrPagsek..ldyEvELavvigkplrevlsveeAedaiaGytllnD 93 
                     c glny++h+ ea+    + pd      pv+f+k++++l+gp    i++P+ ++    dyE+EL +v+gk  r++ + e A+++++G+t++nD
     CCE29451.1  79 RCMGLNYRDHALEAN---LPIPD-----VPVLFIKPRTALSGPYPAaIPIPRLAQDgtSDYEAELCFVMGKSGRDI-PEEHAMEYVLGFTAGND 163
                    599**********95...89999.....788************9644899988665669*****************.9***************9 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 1.5e-10
                    -B-TT-EEEEEES.......S--EE--TT-EEEEEETTTEE CS
  FAA_hydrolase 172 tLepGdliltGTpsgvgaeeeslkflkdgDeveveieglGe 212
                    tLe+G++++tGT +gvga +++++ lk+gD + veie++G+
     CCE29451.1 166 TLERGTVVMTGTGPGVGAMRTPKVTLKHGDDIYVEIENIGT 206
                    9**************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3766.76
//
Query:       CCE29452.1  [L=414]
Description: uncharacterized protein CPUR_03145 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3177.83
//
Query:       CCE29453.1  [L=569]
Description: related to phthalate 4,5-dioxygenase oxygenase reductase subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-25   89.3   0.0    4.4e-25   88.2   0.0    1.6  1  MOSC           MOSC domain
    3.6e-10   39.6   0.2    8.5e-10   38.5   0.2    1.6  1  Fer2           2Fe-2S iron-sulfur cluster binding domain
    5.6e-08   33.4   0.9    1.9e-07   31.7   0.0    2.3  2  NAD_binding_1  Oxidoreductase NAD-binding domain
    6.3e-06   26.0   0.2    1.2e-05   25.0   0.2    1.5  1  3-alpha        3-alpha domain
    0.00019   21.7   2.9    0.00043   20.5   2.9    1.6  1  DUF29          Domain of unknown function DUF29
     0.0025   18.0   0.0      0.026   14.7   0.0    2.4  2  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> MOSC  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0   1.5e-28   4.4e-25       2     131 .]      62     177 ..      61     177 .. 0.92

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 1.5e-28
                 XX---GGGGSEEEEETHHHHHHHHHS..GGGGG-STTTT--SEEE.S-.......-TTT-BTT-E.EEETT.................EE----THHHH CS
        MOSC   2 rkihggdekavllisresldalneelkegrsveldpgrfreNivv.ggaaafeEdtwkelrigdrrfrlggacsRcqmvnvdqetga.rprepcktlak 98 
                  ++hgg++ka+l ++++++ +++++ ++   +++ pg+f+eN+v+  +       ++++++igd  + +g+          d +  +  pr+pc++l++
  CCE29453.1  62 LTFHGGPDKALLGYCSSHYPNWAASHPSHH-HKFLPGAFGENLVTpLM-------NERNVCIGDI-IAIGP----------DVQLQVsLPRQPCFKLNH 141
                 689***********************7776.89************666.......**********.****9..........5555557*********** PP

                 .H..TTHHHHHHHHT---EEEEEEE-EEEETTS-EE CS
        MOSC  99 .f..rrvdkrvkgkgrfGvylrvleegtvrvGdeve 131
                  f  ++++++++++ r+G+y+rvl+egt+++Gd+++
  CCE29453.1 142 rFslKNIAPQAYQTSRTGWYYRVLREGTIQAGDQIR 177
                 99*******************************995 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.2   2.8e-13   8.5e-10      12      75 ..     500     559 ..     495     560 .. 0.82

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 2.8e-13
                 EETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE.CTTSSSSTHHHHHTTEEEEGGGS CS
        Fer2  12 vadgettlldaaeenggidipysCggggCgtClvevlegev.qsdetelegeeldegklrlaCqt 75 
                 v ++e+ ll+++++    d p sC+ g+CgtC+v +++g+v +++++ l +e+   + ++laC++
  CCE29453.1 500 VGEEES-LLEVLRRE-YPDMPSSCEVGNCGTCRVVLKSGRVdHRGSALLPEEK---ETAMLACVS 559
                 667888.******98.9************************877744444443...3579***97 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       3.7   1.1e+04      47      74 ..     212     240 ..     208     260 .. 0.60
   2 !   31.7   0.0   6.4e-11   1.9e-07       1     108 [.     359     450 ..     359     451 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.7
                    HHHHHHCTTEEEEEEE.ESSCTTTSSSEE CS
  NAD_binding_1  47 eelakklpgrlkvvav.vsreeagweggk 74 
                    ++l ++++g+++   +  ++e+++++++k
     CCE29453.1 212 QALGEEHRGQFRSRVArAEKEAKKKSQKK 240
                    56666777744443332234444443443 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 6.4e-11
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    +iagG Gi+ ++ ++r++l     +  + l y++r+ e++ + ++l +l++  +g +  + +  ++++g+    + + + +  e+++    ++h+y
     CCE29453.1 359 FIAGGIGITAFLDLIRHLLSI---NWSCQLHYAVRSAEEMPFADRLAALQQ-TEGVV--TLY--DKSRGQ---VMDIPHII--ESMP---WNSHIY 438
                    7*******************6...789**********************54.45523..333..334443...56666655..3334...589*** PP

                    EECSHHHHHHHH CS
  NAD_binding_1  97 vCGppgMikavr 108
                    vCGp +M++av+
     CCE29453.1 439 VCGPSRMMRAVE 450
                    *********997 PP

>> 3-alpha  3-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.2   4.2e-09   1.2e-05       1      43 [.     186     228 ..     186     229 .. 0.98

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.2e-09
                 -BHHHHHHHHHTS---HHHHHHHHTSTT--HHHHHHHHHHHHH CS
     3-alpha   1 wtVarvnallyhdkldrealrrllelpaLspsWrktfekRLes 43 
                 wt+ rv++ l++d++++++ r l+ + aL+++ r +f+ R+++
  CCE29453.1 186 WTIERVQEFLHRDRDNLDMNRLLAGVQALGEEHRGQFRSRVAR 228
                 ****************************************986 PP

>> DUF29  Domain of unknown function DUF29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   2.9   1.4e-07   0.00043       3      85 ..     180     262 ..     178     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.4e-07
                 TT-HHHHHHHHHHHHHHSS-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHH.HHHHHHHHHHHH- CS
       DUF29   3 eqDfylWleeqaelLrerkfeelDlenLieEiedlgrsekrelesrlavllehlLkwqyqpekrsrswrs.eireqrkeiekll 85 
                 e+ + +W+ e ++   +r+ ++lD++ L+  +++lg++++ + +sr+a+  +   k ++q++ ++++w++ +i e r e ++ +
  CCE29453.1 180 ERQYPQWTIERVQEFLHRDRDNLDMNRLLAGVQALGEEHRGQFRSRVARAEKE-AKKKSQKKGKGDRWEEyKIVERRMETKRVV 262
                 78899*******************************************97655.566888889999997537999998887765 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   8.6e-06     0.026       5      39 ..     358     385 ..     355     410 .. 0.78
   2 ?   -0.2   0.0      0.32   9.6e+02     139     154 ..     437     452 ..     431     454 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.6e-06
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   5 llvagGiGitpfisilkdllkkskkealktkkikl 39 
                    +++agGiGit f+ ++++ll           +++l
     CCE29453.1 358 VFIAGGIGITAFLDLIRHLLSINW-------SCQL 385
                    79*****************98664.......4444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.32
                    xxxxxxxxxxxxxxxx RF
  NAD_binding_6 139 vfvCGppklvkevkkl 154
                    ++vCGp  +++ v+++
     CCE29453.1 437 IYVCGPSRMMRAVEQV 452
                    689******9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4268.94
//
Query:       CCE29454.1  [L=451]
Description: uncharacterized protein CPUR_03147 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-29  103.2   0.0    1.9e-29  102.7   0.0    1.1  1  IFRD      Interferon-related developmental regulator (IFRD)


Domain annotation for each model (and alignments):
>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   1.1e-33   1.9e-29      54     280 ..     119     337 ..     116     365 .. 0.85

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 1.1e-33
        IFRD  54 tReaaLesllellsshy...leefveerlatlldalekslkkgkse.EqalAlkalallcitlgagdeseeileelkpvLkriikdssvslsakaaaie 148
                  Re+ Les++++++++y    ++ ++   ++l +++++ + +g++  E++l l+a+ l++ t    d++ + ++ +++ Lk+i+  ++ +   k++a +
  CCE29454.1 119 VRERNLESYISHVRHKYnawTHDWLNPVSNELAEVFLRQIDRGTTLrERLLRLQAYYLTIST----DDALKTFHYSQSALKKIMVEDD-DDRCKVHATR 212
                 5*************99844469*************************************999....9*********************.********** PP

        IFRD 149 aLglltfvggadeeeieelmeflleifssdgqsieaadsaskalvtaalsawglLltllpssklnkkleedleealealvelLdssdvevriAAGeaiA 247
                 aL +++ ++g ++++  ++m++ll+i++s+gqs+++ + a   +++aa+  w+++++++      ++l +   +a++a++++Ld +d+++   A +aiA
  CCE29454.1 213 ALCMAVTYSGGSQQDRQDVMQYLLNIVQSNGQSVKSHKFAP--VMSAAIIGWSFIASHV------DDLPDAAIPAVDAFSQQLDTTDMQILCDAAQAIA 303
                 **********************************9988888..****************......3333333789************************ PP

        IFRD 248 LlfElsreedeefeeeeee...dteelleqlreLat 280
                 +++E  r+++ ++ +   +   d++ ++  l++ a+
  CCE29454.1 304 FIYEFWRDIQTDDVHF--QfpyDPHPIIGHLKDVAR 337
                 ******9996555432..356889999999888884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3269.29
//
Query:       CCE29455.1  [L=589]
Description: uncharacterized protein CPUR_03148 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-15   56.1   0.1    7.5e-15   55.0   0.1    1.6  1  FHA           FHA domain
     0.0014   18.9   0.0     0.0049   17.2   0.0    1.9  1  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   8.4e-19   7.5e-15       1      69 []      39     116 ..      39     116 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 8.4e-19
                 EEEESSTTSSEETT.........STTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA   1 vtiGRssdcdivld.........dpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 +tiGRs + d++l           p++SrkHa ++f + + +v + D+gS +Gt vN++ri + e+++L sgdv+++G
  CCE29455.1  39 ITIGRSTKRDLQLTakshnacfdCPVMSRKHAKLQFWPFNHSVSIYDIGSLHGTHVNNRRIAPYESHRLTSGDVLKFG 116
                 69****999999888888888757**********7776669************************************8 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.5e-07    0.0049      34      83 ..      63     117 ..      35     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.5e-07
                   TTS-TT-EEEEEE..TTEEEEEE-CESS--EETTEE-SECC...--TTSEEEETT CS
  Yop-YscD_cpl  34 kevsrkhlkLeve..eesvrledlgsrngllvngerveele...lrpgdvlelGt 83 
                   + +srkh+kL++   + sv++ d gs  g+ vn++r++ +e   l+ gdvl+ G 
    CCE29455.1  63 PVMSRKHAKLQFWpfNHSVSIYDIGSLHGTHVNNRRIAPYEshrLTSGDVLKFGD 117
                   4589*******987799*********************666669********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4280.59
//
Query:       CCE29456.1  [L=360]
Description: probable LST8 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-38  128.9  15.6    5.1e-09   36.6   0.1    7.7  8  WD40           WD domain, G-beta repeat
      6e-12   45.7   0.5     0.0092   16.3   0.0    5.1  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    9.8e-09   34.6   0.4       0.01   14.9   0.1    4.3  2  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
    6.5e-06   25.1   3.0      0.071   11.7   0.1    4.6  5  Nup160         Nucleoporin Nup120/160
     0.0069   14.8   0.0       0.02   13.2   0.0    1.7  2  Frtz           WD repeat-containing and planar cell polarity 
  ------ inclusion threshold ------
      0.015   14.4   0.5        1.8    7.6   0.0    2.7  3  DUF1513        Protein of unknown function (DUF1513)
      0.038   13.0   0.0      0.066   12.3   0.0    1.3  1  Coatomer_WDAD  Coatomer WD associated region


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0012       3.2      25      37 ..       5      17 ..       2      18 .. 0.78
   2 !   19.0   0.0   7.2e-07    0.0018       3      38 .]      24      59 ..      22      59 .. 0.86
   3 !   36.6   0.1     2e-12   5.1e-09       3      37 ..      67     102 ..      65     103 .. 0.91
   4 !   19.3   0.1   6.1e-07    0.0016       3      38 .]     109     144 ..     107     144 .. 0.91
   5 ?   -2.2   0.0       3.6   9.2e+03      16      34 ..     165     173 ..     152     177 .. 0.62
   6 !   21.5   0.0   1.2e-07   0.00031       3      37 ..     240     275 ..     239     276 .. 0.91
   7 !   26.5   0.1   3.2e-09   8.2e-06       5      37 ..     297     330 ..     293     331 .. 0.87
   8 ?    1.4   0.0      0.27   6.8e+02       2      18 ..     336     353 ..     335     358 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0012
                EEEEETTSEEEEE CS
        WD40 25 lasGsdDgtvriW 37
                l+++++D+t+r+W
  CCE29456.1  5 LCTAGYDHTIRFW 17
                567777******* PP

  == domain 2  score: 19.0 bits;  conditional E-value: 7.2e-07
                EEEEEESS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  3 clrtltGH.ss.vtslafspdgawlasGsdDgtvriWd 38
                c rt+  H +s v+ l+ spd+++la+++  +tv+++d
  CCE29456.1 24 CSRTI-QHpDSqVNRLCISPDKRYLAAAG-HHTVKLYD 59
                66776.587445**************99*.******98 PP

  == domain 3  score: 36.6 bits;  conditional E-value: 2e-12
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +l  ++GH +++t+++f+ +g+w++++s+Dgtv+iW
  CCE29456.1  67 PLLNFEGHsGNITGVSFHCEGKWMVTSSEDGTVKIW 102
                 67789***655************************* PP

  == domain 4  score: 19.3 bits;  conditional E-value: 6.1e-07
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +r+++ H s+v+++a +p++  ++s+++ g vriWd
  CCE29456.1 109 IQRSYS-HgSPVNDVAIHPNQGEIISCDRAGRVRIWD 144
                 688995.9889*************************9 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 3.6
                 EEEETTSSEEEEEETTSEE CS
        WD40  16 lafspdgawlasGsdDgtv 34 
                 + +          s Dgt+
  CCE29456.1 165 VTVA---------S-DGTL 173
                 4344.........4.5554 PP

  == domain 6  score: 21.5 bits;  conditional E-value: 1.2e-07
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +++++ +H   +t +  spd + la++s D++ +iW
  CCE29456.1 240 PVTHFIAHkEYITRVLLSPDVKKLATCSADHSAKIW 275
                 6789****555************************* PP

  == domain 7  score: 26.5 bits;  conditional E-value: 3.2e-09
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  tl GH  +v+++afs d+a+l++++ D+  r+W
  CCE29456.1 297 ATLIGHqRWVWDCAFSADSAYLVTACSDHYARLW 330
                 5899**777*************97655******* PP

  == domain 8  score: 1.4 bits;  conditional E-value: 0.27
                 EEEEEEESS..SSEEEEEE CS
        WD40   2 qclrtltGH..ssvtslaf 18 
                 q +r + GH  + v ++a 
  CCE29456.1 336 QIIRQYNGHhrGAV-CVAL 353
                 6789999**75558.8865 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0019         5      33      70 ..      27      63 ..      13      70 .. 0.82
   2 !   16.3   0.0   3.6e-06    0.0092      36      81 ..      73     118 ..      64     125 .. 0.89
   3 ?    4.9   0.0     0.012        31      37      81 ..     115     159 ..     111     170 .. 0.86
   4 ?    1.6   0.0      0.13   3.4e+02      36      81 ..     246     291 ..     223     304 .. 0.77
   5 !   10.6   0.0   0.00021      0.55      40      86 ..     305     350 ..     293     355 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0019
  ANAPC4_WD40 33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesg 70
                 + +++ds+v+ L+ +pd + La a    +v+l+d++s+
   CCE29456.1 27 TIQHPDSQVNRLCISPDKRYLAAAG-HHTVKLYDVKST 63
                 557899***************9876.5689***99986 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 3.6e-06
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++++++++++++ +gk ++ + +dg+v++ +  +g++ +s+s +s 
   CCE29456.1  73 GHSGNITGVSFHCEGKWMVTSSEDGTVKIWETRTGTIQRSYSHGSP 118
                  67899********************************999987765 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.012
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++s v+++a +p+   +      g+vr+ d  + ++ h+++ +++
   CCE29456.1 115 HGSPVNDVAIHPNQGEIISCDRAGRVRIWDLAENTCAHEMRPDDN 159
                  6889999999999999999999****************9988766 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.13
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++++ ++ +  +pd k La   +d + ++ ++ +++   ++s +++
   CCE29456.1 246 AHKEYITRVLLSPDVKKLATCSADHSAKIWEVDDTTPQTEFSKETK 291
                  6788899999999****************99999888777776655 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00021
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                   v + a++ d   L+ a+sd   rl +++s++++++++ ++    +c
   CCE29456.1 305 WVWDCAFSADSAYLVTACSDHYARLWEVHSQQIIRQYNGHHRG-AVC 350
                  566778999****************************998875.444 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0     9e-05      0.23     179     215 ..      66     103 ..      47     173 .. 0.84
   2 !   14.9   0.1   3.9e-06      0.01     140     219 ..     257     335 ..     228     348 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9e-05
    Ge1_WD40 179 egllkieehs.liveaafspdGtalatasedGevkffq 215
                 + ll++e hs +i+  +f  +G  + t+sedG+vk + 
  CCE29456.1  66 HPLLNFEGHSgNITGVSFHCEGKWMVTSSEDGTVKIWE 103
                 478999999989***********************996 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3.9e-06
    Ge1_WD40 140 ddeaskllvltrgdkaeiwsvdmiaskygsgelsveeieegllkieehsliveaafspdGtalatasedGevkffqvyle 219
                 + +++kl   +  + a+iw+vd  + + +  + +++   e+   i ++  + + afs+d + l ta++d + +++ v+ +
  CCE29456.1 257 SPDVKKLATCSADHSAKIWEVDDTTPQTEFSKETKSFPLEA-TLIGHQRWVWDCAFSADSAYLVTACSDHYARLWEVHSQ 335
                 45778888889999999***998887766544444333333.34678889*************************99865 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0028       7.1     232     260 ..       4      37 ..       2      61 .. 0.77
   2 ?    1.3   0.0     0.041     1e+02     235     253 ..      92     110 ..      80     115 .. 0.85
   3 ?    2.3   0.0     0.021        53     236     256 ..     134     154 ..     117     177 .. 0.80
   4 ?    0.0   0.0     0.097   2.5e+02     233     250 ..     263     280 ..     249     304 .. 0.84
   5 !   11.7   0.1   2.8e-05     0.071     228     255 ..     312     340 ..     283     349 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0028
                 EEEEEETT-EEEEEETTTTEEEEEEE--...... CS
      Nup160 232 ylfalsrdgkLrvWnlltgkclatidll.....r 260
                 +l+++  d+++r W  l+g c +ti+ +     r
  CCE29456.1   4 ILCTAGYDHTIRFWEALSGICSRTIQHPdsqvnR 37 
                 6899999*****************9888444443 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.041
                 EEETT-EEEEEETTTTEEE CS
      Nup160 235 alsrdgkLrvWnlltgkcl 253
                 + s dg++++W ++tg++ 
  CCE29456.1  92 TSSEDGTVKIWETRTGTIQ 110
                 6689***********9875 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.021
                 EETT-EEEEEETTTTEEEEEE CS
      Nup160 236 lsrdgkLrvWnlltgkclati 256
                   r g++r+W+l+ ++c+  +
  CCE29456.1 134 CDRAGRVRIWDLAENTCAHEM 154
                 557799***********9876 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.097
                 EEEEETT-EEEEEETTTT CS
      Nup160 233 lfalsrdgkLrvWnlltg 250
                 l++ s d+  ++W +++ 
  CCE29456.1 263 LATCSADHSAKIWEVDDT 280
                 8999*********99975 PP

  == domain 5  score: 11.7 bits;  conditional E-value: 2.8e-05
                 ..TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 228 i.gqtylfalsrdgkLrvWnlltgkclat 255
                 + +++yl+++++d+  r+W + +++++++
  CCE29456.1 312 SaDSAYLVTACSDHYARLWEVHSQQIIRQ 340
                 2499*********************9987 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     8e-06      0.02     271     349 ..      86     166 ..      75     172 .. 0.85
   2 ?   -1.9   0.0       0.3   7.6e+02     259     291 ..     303     335 ..     290     340 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8e-06
        Frtz 271 edk.LllGceDssviLydeerkitklvkaevvP.sliswhpdsaillvasergelqifDlaLspiriqllsedvePksvld 349
                 e k ++  +eD++v ++++ +++ +   ++  P + ++ hp++  ++ ++  g+++i+Dla  +  + +  +d +P s + 
  CCE29456.1  86 EGKwMVTSSEDGTVKIWETRTGTIQRSYSHGSPvNDVAIHPNQGEIISCDRAGRVRIWDLAENTCAHEMRPDDNVPMSSVT 166
                 4441455789***************99999998457*************************************99998765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.3
        Frtz 259 raqvislafnpdedkLllGceDssviLydeerk 291
                 +  v  +af+ d   L+  c D    L++ + +
  CCE29456.1 303 QRWVWDCAFSADSAYLVTACSDHYARLWEVHSQ 335
                 5567789****************9999998865 PP

>> DUF1513  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0071        18     219     254 ..      78     112 ..      47     119 .. 0.73
   2 ?    7.6   0.0   0.00069       1.8     221     264 ..     121     163 ..     116     183 .. 0.79
   3 ?   -3.2   0.0       1.3   3.4e+03     232     255 ..     318     341 ..     304     354 .. 0.58

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0071
     DUF1513 219 igsvavdsegrlvavtsPrgnlvavwdlasgellee 254
                 i  v ++ eg+ ++vts + ++v +w++++g++ ++
  CCE29456.1  78 ITGVSFHCEGK-WMVTSSEDGTVKIWETRTGTIQRS 112
                 34466777765.559999999*********998765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00069
     DUF1513 221 svavdsegrlvavtsPrgnlvavwdlasgelleeaaladaagva 264
                 +va++ +++ + +++ r+++v +wdla++++ +e +  d   ++
  CCE29456.1 121 DVAIHPNQGEI-ISCDRAGRVRIWDLAENTCAHEMRPDDNVPMS 163
                 89999987666.9******************9998877765444 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.3
     DUF1513 232 avtsPrgnlvavwdlasgelleea 255
                  vt+ + + + +w+ +s++++++ 
  CCE29456.1 318 LVTACSDHYARLWEVHSQQIIRQY 341
                 455555566666666666655544 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.6e-05     0.066      27     161 ..      27     176 ..      22     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD  27 elgsieiypqslshnpngrfvlVcgdgeyiiyt.......alalrnkaygkgldfvwvssnrfavles.sksvkifknfkekktksikleyqvdki 114
                     ++  + +++ l ++p++r+++  g+++ ++y         l + +   g+ + + +  +++  v+ s  ++vki    +++ ++s ++   v+++
     CCE29456.1  27 TIQHPDSQVNRLCISPDKRYLAAAGHHTVKLYDvkstnphPLLNFEGHSGNITGVSFHCEGKWMVTSSeDGTVKIWETRTGTIQRSYSHGSPVNDV 122
                    56677888999**********************999999978888899999999***999998888887*******999****************9 PP

                    XX....XXXXXXXXXX.XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 115 fg....GalLgvksegsvsfYDweqgklvrridvk...kvknVvwsddgelval 161
                          G ++  +  g v ++D+++++  ++++ +   +++ V +  dg+l++ 
     CCE29456.1 123 AIhpnqGEIISCDRAGRVRIWDLAENTCAHEMRPDdnvPMSSVTVASDGTLLCA 176
                    9999***********************999998774444677877778777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2643.03
//
Query:       CCE29457.1  [L=186]
Description: uncharacterized protein CPUR_03150 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-12   45.5   5.4    8.6e-12   45.5   5.4    1.9  3  HsbA      Hydrophobic surface binding protein A
  ------ inclusion threshold ------
      0.015   15.0   0.1      0.021   14.5   0.1    1.2  1  DotU      Type VI secretion system protein DotU


Domain annotation for each model (and alignments):
>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0044        39      28      62 ..      36      71 ..      23      73 .. 0.70
   2 !   45.5   5.4   9.6e-16   8.6e-12      14     120 .]      50     152 ..      37     152 .. 0.92
   3 ?   -3.4   0.0       1.4   1.2e+04      76      93 ..     165     182 ..     163     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0044
                H...HHHHHHHHHHHHHHHHHHHHHHHTS----HHH CS
        HsbA 28 g.asalpilsasnalvsaikkattdaqasapltdee 62
                + + +l +l+as a  +++k+a ++ ++  pl ++ 
  CCE29457.1 36 StNPVLDLLTASEAKDDDLKAAVDNWKTRNPLEPAR 71
                335578888888888888888888888888887765 PP

  == domain 2  score: 45.5 bits;  conditional E-value: 9.6e-16
                 HHHHHHHHHHH--SH..HHHHHHHHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHT-HHHHHHHHHHHHHHHH CS
        HsbA  14 avtaldtavnafnGgasalpilsasnalvsaikkattdaqasapltdeealalaqavqtLepdvkaaldaliaKkpafdkagltslvlssLqdlkaasd 112
                 + ++l++av++++      + l+ + al+ ++k++++  ++++ l+ ++a +l+ + q+Le ++k+++++++a+++  ++a+++++v++ +++ +aas+
  CCE29457.1  50 KDDDLKAAVDNWKT----RNPLEPARALIETLKNGAASLSSAPVLSVAQAMDLTKSSQDLEAHTKKLVESIKAQRDNAKAANACGIVRKVIEEVSAASA 144
                 557899******66....4778899************************************************************************** PP

                 HHHHHHHH CS
        HsbA 113 aLsdalvs 120
                 a+ da+vs
  CCE29457.1 145 AFVDATVS 152
                 *****985 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHTHHHHHH CS
        HsbA  76 dvkaaldaliaKkpafdk 93 
                 + + +lda ++ k+ f  
  CCE29457.1 165 QSQGTLDAWADAKSFFSE 182
                 567788888888888765 PP

>> DotU  Type VI secretion system protein DotU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   2.4e-06     0.021       7      81 ..      87     164 ..      84     185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.4e-06
        DotU   7 rpllllvarlresasepdvealrerlveelrafeqrlkaa...gysaediedaryalcaliDEavlntpwgerseWar 81 
                 +p+l+++  +  ++s++d+ea  ++lve ++a ++++kaa   g+ ++ ie+++ a +a++D +v + p  ++s  ++
  CCE29457.1  87 APVLSVAQAMDLTKSSQDLEAHTKKLVESIKAQRDNAKAAnacGIVRKVIEEVSAASAAFVDATVSKIPLIGQSIARK 164
                 5888888889988889****************999999984456*********************9999877773333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       911  (0.0508115); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1338.51
//
Query:       CCE29458.1  [L=251]
Description: uncharacterized protein CPUR_03151 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.82   10.0   5.2        1.6    9.1   1.5    2.9  2  Nif11     Nif11 domain


Domain annotation for each model (and alignments):
>> Nif11  Nif11 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.22     4e+03      34      43 ..      10      19 ..       6      20 .. 0.84
   2 ?    9.1   1.5     9e-05       1.6       8      27 ..     147     172 ..     142     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.22
       Nif11 34 alAkeaGyef 43
                a+++++G+ f
  CCE29458.1 10 AFISAHGFYF 19
                78999***88 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 9e-05
       Nif11   8 aFlekvkq....Dpalreqlkac..s 27 
                 +F e++ q     p+l+eql+ac  +
  CCE29458.1 147 RFREAILQgqqpHPSLQEQLQACdvQ 172
                 89999999999999999999999443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1904.53
//
Query:       CCE29459.1  [L=35]
Description: uncharacterized protein CPUR_03152 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       125  (0.00697194); expected 358.6 (0.02)
Passed bias filter:                      102  (0.00568911); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 284.18
//
Query:       CCE29460.1  [L=785]
Description: related to sulphate transporter proteins [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-77  261.2  13.8    1.9e-77  260.6  13.8    1.3  1  Sulfate_transp  Sulfate permease family
    1.9e-16   59.8   0.0      4e-16   58.7   0.0    1.6  1  STAS            STAS domain
     0.0017   18.6   0.0     0.0047   17.2   0.0    1.8  1  STAS_2          STAS domain
  ------ inclusion threshold ------
       0.27   11.3   5.8        9.4    6.4   0.0    4.0  3  DUF2892         Protein of unknown function (DUF2892)
        1.1    9.7  10.2       0.39   11.1   3.6    3.0  2  MFS_MOT1        Molybdate transporter of MFS superfamily
        3.3    8.2   6.1        4.9    7.7   1.4    3.0  3  DUF3980         Domain of unknown function (DUF3980)


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.6  13.8   6.3e-81   1.9e-77       1     363 [.     188     571 ..     188     590 .. 0.92

  Alignments for each domain:
  == domain 1  score: 260.6 bits;  conditional E-value: 6.3e-81
  Sulfate_transp   1 lkgDliaGitvallaiPqalayal.laglppiygLyssvvpqlvyalfGtsrqlavGpvavlslivgeiiakv......aeeepekgieiattlt 88 
                     l+gDl+++it+a++ +P+al++a  la++ppi gLy+ v+ +++ya++G+ +q++vGp+a+ sl+vg+++++        e+e+  + +i  +++
      CCE29460.1 188 LQGDLVSAITIASFYLPMALSLAAnLAHVPPIHGLYAFVFNPFIYAVLGSCPQMVVGPEAAGSLLVGTVVQQSvdsgntGEDEDLMHAQICGVVA 282
                     799*********************9**********************************************998888877777999999999*** PP

  Sulfate_transp  89 llaGviqvllGllRLgflveflseavlsGfiaGaaivillsqikvllgle.....rvskkeslvsvlsslftnlekvnlakvvlgllllvvLlvt 178
                      +aG+i +++G+ RLgfl ++ls+++l+Gfi+++++vi++ q+   lgl+     + ++++s+v+ ++ +++n+ +v+ ++++++++ ++v++v 
      CCE29460.1 283 GMAGAIVLIAGVARLGFLDSVLSRPLLRGFISAIGFVIAVDQLIPELGLSevasrEGASHGSTVEKIYFILENVGEVHRLTFAIAGVSFLVIMVF 377
                     **************************************************77766667899********************************** PP

  Sulfate_transp 179 kellkklkkl..lvipapaelvavivatlvsaifelkreagvkivgeips...glpelslp..kvdwsllsallpdalaialvglleaiavsksl 266
                     +el+k+l+ +  + ++ p  +++v+v+ ++   f + +++gv i+g+++    g  ++  p     ++++++ l++++ ial+g++e+  ++ksl
      CCE29460.1 378 RELKKRLEPRfpSIAFLPDRFFVVVVSAILCRHF-RWDQHGVDILGSVKAasgGVFAFRWPfrLSYMKHIRSALSTSFLIALLGFFESSVAAKSL 471
                     *******9997778899999**************.8999****98888753226888888853334677889999******************99 PP

  Sulfate_transp 267 ...dkkkgykvdsnkELvAlGfsNilsslfgglpatgafsrsavnikaGaktqlsglvsalvvllvllvltplleyiPkavLaaiiivagkglLv 358
                        d+++g ++++n+E++AlG++N++++ f +lpa+g++ rs vn  +G+k+++s+++++l++ll++l+l p+++++Pk vL+++i v++++l++
      CCE29460.1 472 ggnDAISGIELSANREMIALGTANLVGACFMSLPAFGGYGRSKVNKTTGGKSPVSSMLLSLITLLAILFLLPYFYFLPKPVLSSMISVVAYSLIE 566
                     4445699*************************************************************************************998 PP

  Sulfate_transp 359 elkel 363
                     e ++ 
      CCE29460.1 567 EAPHD 571
                     87665 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   1.4e-19     4e-16       3     117 .]     644     770 ..     642     770 .. 0.88

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 1.4e-19
                 EEEECTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC...............-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HH.HH CS
        STAS   3 daeeiegililrldgpidfanaesfkeklkravgeeperve.......kkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpe.vr 93 
                  +e+ieg+li+++++p++fan +++k +l+r + +++++ +       ++es +++i+d+ +v  +D sG ++L+ei+++++ +gv+++++   ++  +
  CCE29460.1 644 SLEFIEGCLIVKIPEPLTFANTGELKARLRRLELYGTSAAHpalprlrSQESNRNVIFDIHGVASMDGSGTQVLEEIVRNYRERGVRIFFSRGPSRrDH 742
                 5799*********************************9999*************************************************864433133 PP

                 HH...HHHTTCGGCC...SEEESSHHHH CS
        STAS  94 ek...lektgffdeve.eeklfltvhdA 117
                      +e++g+    + e+++ ++v++A
  CCE29460.1 743 PVwelMERSGIVALCGgESHFVMDVEEA 770
                 3355588888888888888888888876 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.6e-06    0.0047       4      65 ..     657     735 ..     654     752 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.6e-06
      STAS_2   4 sGeldldtaaelreqlleal................aag.aevvvDlsgvervDsaalalLlalartarargrrlvlrg 65 
                 ++ l+ ++  el+++l+++                 +   + v  D +gv ++D ++ ++L + +r  r+rg r+ +++
  CCE29460.1 657 PEPLTFANTGELKARLRRLElygtsaahpalprlrsQESnRNVIFDIHGVASMDGSGTQVLEEIVRNYRERGVRIFFSR 735
                 555666666666666666444566666666666665333579********************************99854 PP

>> DUF2892  Protein of unknown function (DUF2892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.22   6.5e+02      35      54 ..     221     240 ..     196     243 .. 0.69
   2 ?    4.1   0.4     0.016        49      14      50 ..     251     296 ..     241     311 .. 0.70
   3 ?    6.4   0.0    0.0031       9.4       3      28 ..     354     379 ..     352     408 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.22
     DUF2892  35 llglvGavllltgltgfCpl 54 
                  l+++  ++++ +++g Cp 
  CCE29460.1 221 GLYAFVFNPFIYAVLGSCPQ 240
                 345556789*********95 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.016
     DUF2892  14 ivvGlvllllallglsggw.........gwllglvGavllltgltg 50 
                 ++vG v+  ++  g +g           g+++g++Ga+ l++g+ +
  CCE29460.1 251 LLVGTVVQQSVDSGNTGEDedlmhaqicGVVAGMAGAIVLIAGVAR 296
                 444444444444444333377777777899*************987 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0031
     DUF2892   3 kNvgtldRilrivvGlvllllallgl 28 
                 +Nvg + R+  +++G+ +l++ +++ 
  CCE29460.1 354 ENVGEVHRLTFAIAGVSFLVIMVFRE 379
                 6*******************999876 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.5       0.2     6e+02      73     109 ..     283     318 ..     264     320 .. 0.76
   2 ?   11.1   3.6   0.00013      0.39      25     111 .]     472     564 ..     448     564 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.2
    MFS_MOT1  73 illGlvllllgltgllerllrliPksvlgglllgaGl 109
                  + G+++l+ g+ + l  l +++ +++l+g + + G+
  CCE29460.1 283 GMAGAIVLIAGVAR-LGFLDSVLSRPLLRGFISAIGF 318
                 36677888888776.8888888999999998888875 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00013
    MFS_MOT1  25 a........slsltalllsvGlmnlltglfggvPmchgAgglaaqyrf..gartgaagillGlvllllgltgllerllrliPksvlgglllgaGleL 111
                          +ls+++ ++ +G +nl+++ f+ +P   g g    +  +  g ++ ++ +ll+l+ ll  +++ l     ++Pk+vl  ++ +++ +L
  CCE29460.1 472 GgndaisgiELSANREMIALGTANLVGACFMSLPAFGGYGRSKVN--KttGGKSPVSSMLLSLITLLA-ILF-LLPYFYFLPKPVLSSMISVVAYSL 564
                 35566666677889999*************988866555555555..4459**********9988765.444.5778899**********9999887 PP

>> DUF3980  Domain of unknown function (DUF3980)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         5   1.5e+04      27      48 ..     223     245 ..     221     260 .. 0.60
   2 ?    1.2   0.1      0.17   4.9e+02      24      51 ..     445     472 ..     439     484 .. 0.86
   3 ?    7.7   1.4    0.0017       4.9      44      78 ..     577     614 ..     553     619 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5
     DUF3980  27 mafstgpfihnl.gfdeisisgs 48 
                  af   pfi+ + g     + g+
  CCE29460.1 223 YAFVFNPFIYAVlGSCPQMVVGP 245
                 67888888876324444444454 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.17
     DUF3980  24 silmafstgpfihnlgfdeisisgselg 51 
                  i  a+st  +i  lgf e s++   lg
  CCE29460.1 445 HIRSALSTSFLIALLGFFESSVAAKSLG 472
                 577899****************999988 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0017
     DUF3980  44 sisg.selglisivmlgsifqsvlv..fcgiwvfillv 78 
                  i g +elgl++i++l +if s+ +    g+ + illv
  CCE29460.1 577 RIRGwTELGLMAIIFLSTIFYSLTLgmALGVGISILLV 614
                 455438***************98651145777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5592.93
//
Query:       CCE29461.1  [L=874]
Description: probable transcription activator protein acu-15 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-35  121.6   0.4    6.2e-35  120.5   0.4    1.5  1  Fungal_trans  Fungal specific transcription factor domain
      2e-10   40.6  10.5      2e-10   40.6  10.5    1.8  2  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
       0.41   10.7   1.4        1.1    9.4   1.4    1.7  1  DUF1192       Protein of unknown function (DUF1192)


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.4     1e-38   6.2e-35       2     266 ..     220     458 ..     219     459 .. 0.93

  Alignments for each domain:
  == domain 1  score: 120.5 bits;  conditional E-value: 1e-38
  Fungal_trans   2 drffsnfhpqfpilhkpsflpkt...ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilq 95 
                   +++f+ + p+fp+lhkpsfl+++     +++++   ++ + l++++a++  +ses++ ++ +  ++          ++++ i +++ ++++ l +lq
    CCE29461.1 220 NVYFQELAPLFPVLHKPSFLRTYeefVLDPDKIRCRYKIAQLYLVFAIAGVSSESPDLQQIAICEQ----------QWNKAI-QSLAVENT-LSMLQ 304
                   68**********************998999999999999********************9444444..........889998.8*******.***** PP

  Fungal_trans  96 sLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddl 192
                   +L l+ ly++ + d++ + ++ g av la++lgLh+n+++ +        + + e+r++++w+ + lD++ a  lG p ll+++++++++P d dd+
    CCE29461.1 305 CLILALLYCMLRADNKRVQYFKGQAVGLAHRLGLHQNQKRLS------FGVLTLETRKKVFWTLYTLDCFSAATLGLPKLLKEEDVQTEFPADVDDE 395
                   ******************************************......99*********************************************** PP

  Fungal_trans 193 wesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnWr 266
                    ++++  + tl++     e+++ + a++l+++++il+ i+ + +      +++ +       +  le +ld W+
    CCE29461.1 396 YITENGFQPTLPG-----ECTRLSSALALFRMSRILARILEKNYPSAVNYELSLQK------MSSLEVELDSWY 458
                   *************.....9**********************777665555555555......889999**9998 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6  10.5   3.4e-14     2e-10       1      39 [.      22      60 ..      22      61 .. 0.91
   2 ?   -3.7   0.3       2.3   1.4e+04      10      15 ..     251     256 ..     250     258 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 3.4e-14
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39
                +aCd+Cr+kK++Cd+ +P+Cs+C+ +++eC+  ++ s+r
  CCE29461.1 22 QACDRCRSKKIRCDGVRPTCSQCANVGFECRTSDQLSRR 60
                69*****************************77777665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.3
                 T---ST CS
     Zn_clus  10 KvKCda 15 
                 K++C +
  CCE29461.1 251 KIRCRY 256
                 899976 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.4   0.00019       1.1      24      50 ..      69      95 ..      67      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00019
     DUF1192 24 ELeerIalLeaEIaRleaaiakkkasr 50
                 LeerI +Le E+  l++ +++k+++ 
  CCE29461.1 69 SLEERIRQLETEVTELKDLLDEKDEKL 95
                69********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 6153.61
//
Query:       CCE29462.1  [L=420]
Description: uncharacterized protein CPUR_03155 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0028   18.1   0.0      0.006   17.0   0.0    1.7  1  SET       SET domain
  ------ inclusion threshold ------
       0.21   11.4   4.0       0.22   11.3   0.9    2.6  4  Rop-like  Rop-like


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.7e-07     0.006     117     169 .]     149     200 ..      34     200 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.7e-07
                 EEECCC...GTTGGGCEEXSSSSEEEEEEEE.TTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxx...xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 117 ksgnga...gplarflNHsCdpNcnltvqnv.lrgprvavfAtrdIkkGeEltidYg 169
                  s       +p ++++NHs +p +   ++   +++  + ++    +++G E+ti+Yg
  CCE29462.1 149 TS---GtamVPALDMVNHSGQPSA--LYEEEgTEDVVLLIRPETSVSEGKEITISYG 200
                 23...2555***************..77777799**********************8 PP

>> Rop-like  Rop-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.32   2.9e+03      44      59 ..      69      84 ..      66      89 .. 0.61
   2 ?   -0.1   0.1      0.09   8.1e+02      34      58 ..      80     104 ..      78     107 .. 0.78
   3 ?   11.3   0.9   2.5e-05      0.22      12      35 ..      95     118 ..      85     129 .. 0.70
   4 ?   -3.5   0.0         1   9.3e+03       9      19 ..     248     258 ..     247     261 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHHHHH CS
    Rop-like 44 ktyeafaelaeakaeL 59
                ++ +a+a+ +   ++L
  CCE29462.1 69 EAVDAYAKVDHNFKQL 84
                6667777776666655 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.09
                 TGGGHHHHHHHHHHHHHHHHHHHHH CS
    Rop-like  34 nyeeipevAqktyeafaelaeakae 58 
                 n++++++vA +     a+la+++ e
  CCE29462.1  80 NFKQLLDVAGRKASLKAKLAALQTE 104
                 8999999999888888888877766 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 2.5e-05
                 HHHHHHHHHHHH.HHHHHHHTTTTG CS
    Rop-like  12 KlnskAtqakmd.LHDLaEdLPtny 35 
                 K++  A q+  + LHDL+EdLP  +
  CCE29462.1  95 KAKLAALQTEFElLHDLSEDLPF-W 118
                 45555555555547********5.5 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 1
                 HHHHHHHHHHH CS
    Rop-like   9 evkKlnskAtq 19 
                 +v Kl+s+A++
  CCE29462.1 248 KVVKLSSEAGN 258
                 7889***9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3101.02
//
Query:       CCE29463.1  [L=533]
Description: related to hsp70 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-13   47.4   0.1    6.2e-11   41.2   0.1    2.4  3  HSP70     Hsp70 protein
    4.7e-07   28.9   0.1    2.7e-06   26.4   0.1    2.0  2  MreB_Mbl  MreB/Mbl protein
  ------ inclusion threshold ------
      0.024   15.5   0.1      0.047   14.6   0.1    1.6  1  PE_PPE_C  Polymorphic PE/PPE proteins C terminal


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.13   7.9e+02       1      22 [.      21      42 ..      21      71 .. 0.79
   2 !   41.2   0.1     1e-14   6.2e-11     109     200 ..     120     223 ..     107     246 .. 0.88
   3 !    3.6   0.0    0.0026        15     293     360 ..     326     393 ..     258     419 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.13
                EEEEEEXSSEEEEEEEETTEEE CS
       HSP70  1 viGiDLGttnsvvavmeggkie 22
                +i +D Gtt+s va + +++++
  CCE29463.1 21 IIALDFGTTYSGVAYCFANQTN 42
                5789*******99976655554 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 1e-14
                 EHHHHHHHHHHHHHHHHHHHHTSBEEEE.........EEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS....SCEEEEEEEEX CS
       HSP70 109 tpeqisamvLkklketaeaylgkkvtda.........vitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd....kernvlvyDlG 194
                 +p +++a +++ + e+a + +gk++ +a         v++vPa + da ++at  A+++AG++ + iv ep Aaal Y +++ d    ++   +v D G
  CCE29463.1 120 KPFEVAADFIQAIYEHALQDIGKTIPKAymdmcdkefVLSVPAVWSDAAKNATLKAAELAGIKPVTIVKEPEAAAL-YAIKSLDfaieRNDAFVVCDAG 217
                 68899999999999999999999986554444444459*************************************9.*****99999989999****** PP

                 SSXEEE CS
       HSP70 195 ggtfdv 200
                 ggt d 
  CCE29463.1 218 GGTVDL 223
                 ***995 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.0026
                 EEHHHHHHHHHHHHHHTHHHHHHHHHHCTEE..GGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHT CS
       HSP70 293 lsRakfeelvedllertlepvekalkdaklk..keeidevvlvGGstRiPkvqelvkelfgkepsktvnp 360
                 +s + + ++ e+l++++l+ +e+ +++ +lk   + ++ + lvGG      + ++vk+ f k   + ++p
  CCE29463.1 326 ISGKVLSRIFEPLIADILKMIEHQVQEVRLKrpGKGVSGIFLVGGFGSSNYLMQRVKDHFPKI--QVLQP 393
                 566667888999999999999999999999965689**********99999999999999863..33444 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   4.6e-10   2.7e-06      75     163 ..     134     225 ..     122     238 .. 0.81
   2 ?   -0.4   0.0     0.067     4e+02     275     316 ..     363     405 ..     320     412 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 4.6e-10
                 HHHHHHHHHHHHT.SS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHT....T--TTSSS-EEEEEE-SS-EEEEEEE CS
    MreB_Mbl  75 eellkyfikkvkk.kkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGa....glpveepsgnmvvdiGggttevavis 163
                 e+ l+ + k + k    +  ++ v++vP   ++  ++A  +aa+ aG + v++++ep aAA+ a    +  +e+  + +v+d Gggt ++  is
  CCE29463.1 134 EHALQDIGKTIPKaYMDMCDKEFVLSVPAVWSDAAKNATLKAAELAGIKPVTIVKEPEAAALYAikslDFAIERNDAFVVCDAGGGTVDL--IS 225
                 56667777776664456788999**************************************9876656889****************885..44 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.067
                 H-EEEESGGGGSBTHHHHHHHHH.SS-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 275 rgivltGGgallkgldkllseet.glpvkvaedpltcvakGtg 316
                  gi+l+GG +  + l + +++++ +++v   +d+  +++kG+ 
  CCE29463.1 363 SGIFLVGGFGSSNYLMQRVKDHFpKIQVLQPSDAWAAIVKGAV 405
                 5999****99999999999988768999999999999999975 PP

>> PE_PPE_C  Polymorphic PE/PPE proteins C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   7.9e-06     0.047      13      49 ..     158     194 ..     157     251 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.9e-06
    PE_PPE_C  13 LSVPpsWaaaapaasaaaaalsgttaaaaaaaagaal 49 
                 LSVP+ W+ aa  a+  aa l g+++++  ++++aa+
  CCE29463.1 158 LSVPAVWSDAAKNATLKAAELAGIKPVTIVKEPEAAA 194
                 9********************9888888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 3360.54
//
Query:       CCE29464.1  [L=451]
Description: uncharacterized protein CPUR_03157 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0051   16.0  11.4     0.0078   15.3  11.4    1.3  1  Atg14            Vacuolar sorting 38 and autophagy-related su
     0.0096   15.4  17.4      0.015   14.8  17.4    1.3  1  Golgin_A5        Golgin subfamily A member 5
  ------ inclusion threshold ------
      0.019   15.1   2.6        0.1   12.8   0.3    2.4  2  CwsA             Cell wall synthesis protein CwsA
       0.02   13.8  13.4       0.03   13.2  13.4    1.3  1  Spc7             Spc7 kinetochore protein
      0.023   14.9  14.0      0.047   13.9  14.0    1.6  1  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
      0.024   14.4  10.0      0.047   13.4  10.0    1.4  1  Lectin_N         Hepatic lectin, N-terminal domain
      0.074   11.0   8.0        0.1   10.5   8.0    1.2  1  Prominin         Prominin
        0.1   11.5  18.0     0.0068   15.3  13.3    1.4  2  CALCOCO1         Calcium binding and coiled-coil domain (CALC
       0.12   12.0   0.0       0.64    9.6   0.0    2.2  2  YvrJ             YvrJ protein family
       0.12   11.7  10.5       0.18   11.2  10.5    1.2  1  DUF4407          Domain of unknown function (DUF4407)
       0.19   11.9  15.4        1.7    8.8   5.0    2.7  2  Cep57_CLD_2      Centrosome localisation domain of PPC89
        0.2   11.7   9.2        0.4   10.7   9.0    1.5  1  GldM_N           GldM N-terminal domain
       0.29   11.0  14.5       0.78    9.5  14.1    1.8  1  Phage_GP20       Phage minor structural protein GP20
       0.32   10.8  10.3       0.91    9.3  10.3    1.8  1  PIN_8            PIN like domain
       0.37    8.7   8.7       0.47    8.3   8.7    1.1  1  V_ATPase_I       V-type ATPase 116kDa subunit family
       0.62    8.7   8.7      0.058   12.1   3.7    1.7  2  DUF935           Protein of unknown function (DUF935)
       0.72    7.3  16.8       0.93    6.9  16.8    1.1  1  DUF3584          Protein of unknown function (DUF3584)
        1.4    8.7  10.8          4    7.2   2.1    2.3  2  Bacillus_HBL     Bacillus haemolytic enterotoxin (HBL)
        1.5    8.9   6.1          2    8.5   4.6    1.9  2  Cob_adeno_trans  Cobalamin adenosyltransferase
        1.6    7.9   8.1        2.5    7.3   8.1    1.4  1  TMPIT            TMPIT-like protein
        1.9    8.0  10.0          2    8.0   8.2    2.0  1  Fzo_mitofusin    fzo-like conserved region
        2.4    8.8  19.5        5.6    7.6  19.5    1.6  1  HIP1_clath_bdg   Clathrin-binding domain of Huntingtin-intera
        2.8    8.7   9.8        1.5    9.5   1.9    2.4  2  KfrA_N           Plasmid replication region DNA-binding N-ter
        2.8    8.0  17.4        7.8    6.6  17.4    1.8  1  Mod_r            Modifier of rudimentary (Mod(r)) protein
        4.7    7.6  22.6        3.7    8.0   7.1    3.3  2  Csm1_N           Csm1 N-terminal domain
        5.3    7.4  22.2         17    5.7  22.2    1.9  1  OmpH             Outer membrane protein (OmpH-like)
        6.2    7.5  13.3        3.7    8.2   4.5    2.6  2  YabA             Initiation control protein YabA
        7.5    6.7  20.7         11    6.2  16.8    2.1  2  ATG16            Autophagy protein 16 (ATG16)
        7.7    7.0  15.8         14    6.2   6.3    2.9  2  Fungal_TACC      Fungal Transforming acidic coiled-coil (TACC
        9.8    7.1  18.3         17    6.3   9.5    2.7  2  Rho_Binding      Rho Binding


Domain annotation for each model (and alignments):
>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3  11.4   1.3e-05    0.0078      42     158 ..      56     197 ..      44     233 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
       Atg14  42 kkkiekalegke.........eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkk 131
                 +++ie++l   +          +++  ++   + ++l ++ ++ ++lr+++q lk++l+q k+  ++k ++l+++s + k   s+l+sl+++l++ +++
  CCE29464.1  56 QTRIEEKLDDLTkgvadipskVCDEFMKRCVESEKQLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQQLQTKSLEAKGLGSELQSLKEQLQQQKAD 154
                 556666666655666666664445555666677888999999999**************************************************9998 PP

       Atg14 132 qiaklqdaik......rieqk.............lsslssktlesr 158
                 + +k+   +       +                  +++s++ + +r
  CCE29464.1 155 SQEKVAGLTTtihgldE---EkrklrevilgnasRHEVSDDEIRQR 197
                 87777655552224431...12223333444444555555555555 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8  17.4   2.5e-05     0.015      45     173 ..      74     199 ..      57     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.5e-05
   Golgin_A5  45 lsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikd 143
                  s+  de +++    +++l   +++ e+lr+e+q l++q ++e   +++++q+l+++      + + + +el++lke+l+  + + +++ a l + i+ 
  CCE29464.1  74 PSKVCDEFMKRCVESEKQLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQQLQTKSL----EAKGLGSELQSLKEQLQQQKADSQEKVAGLTTTIHG 168
                 5677888888888899999999*****************************99988776....4455778***************************** PP

   Golgin_A5 144 rekeieklrnqlttk.slsssseselesRlk 173
                  ++e  klr+ +  + s ++ s++e+ +R  
  CCE29464.1 169 LDEEKRKLREVILGNaSRHEVSDDEIRQRFV 199
                 *********998755488899****999964 PP

>> CwsA  Cell wall synthesis protein CwsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.5      0.16        95      38      74 ..      91     127 ..      55     136 .. 0.68
   2 ?   12.8   0.3   0.00017       0.1      42      94 ..     130     182 ..     119     189 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.16
        CwsA  38 eelrrryresrlarelaaaqeaiaqelaaaqevvagl 74 
                 + + ++++++ l++e+ + ++ + qe a +q+ v +l
  CCE29464.1  91 QLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQQL 127
                 4455666666677777777777777777777766665 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00017
        CwsA  42 rryresrlarelaaaqeaiaqelaaaqevvaglPqaledarkkrrrkrpllla 94 
                 ++ +++ l +el + +e + q+ a +qe vagl  ++++  +++r+ r+++l 
  CCE29464.1 130 KSLEAKGLGSELQSLKEQLQQQKADSQEKVAGLTTTIHGLDEEKRKLREVILG 182
                 4556677999************************************9998875 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  13.4   5.1e-05      0.03     160     259 ..      94     182 ..      58     234 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.1e-05
        Spc7 160 kqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervle 258
                  +            +e +el++e+++l+++ ++ ++  ++++++l+ +  e+k   +e++   ++lq+q+++++ek++ l++ ++ l ee ++ ++v+ 
  CCE29464.1  94 TKS-----------KEAEELRSEVQSLKKQLKQEKADSQDKVQQLQTKSLEAKGLGSELQSLKEQLQQQKADSQEKVAGLTTTIHGLDEEKRKLREVIL 181
                 333...........3444555555555555555444446666666666555555555566666666666666666666666666666666555555554 PP

        Spc7 259 e 259
                  
  CCE29464.1 182 G 182
                 3 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9  14.0   7.9e-05     0.047      48     131 ..      95     178 ..      54     207 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.9e-05
  Jnk-SapK_ap_N  48 eeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkk 131
                    ++ e+eelr e+++L++++++ek++++++ ++l+ +  + ++  +elq+  eql++++   + k+  +++ ++ l e++ +l++
     CCE29464.1  95 KSKEAEELRSEVQSLKKQLKQEKADSQDKVQQLQTKSLEAKGLGSELQSLKEQLQQQKADSQEKVAGLTTTIHGLDEEKRKLRE 178
                    67899******************************************************9999999999999999999998876 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4  10.0   7.9e-05     0.047      50     124 ..      99     176 ..      92     178 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.9e-05
    Lectin_N  50 nsqLqreLetLketfsnfssstlaeiqalss...qggslsekvtsleaklekkqqdlkadhselllhvkqlvkdLrtL 124
                   +L++e+++Lk++++   ++ + ++q+l++   +++ l+ +++sl+ +l+++++d ++  + l+  +  l ++ r+L
  CCE29464.1  99 AEELRSEVQSLKKQLKQEKADSQDKVQQLQTkslEAKGLGSELQSLKEQLQQQKADSQEKVAGLTTTIHGLDEEKRKL 176
                 468*************************9994445899***************************9999998887776 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   8.0   0.00017       0.1     206     362 ..      54     214 ..      50     263 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
    Prominin 206 elekhvsddLddagkhlgldladtlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsn.lCqseeCskilssl 303
                 +++++++++Ldd  k + +  ++  ++ + + +++ ++l+++ kea+e+ ++v++l+k+L++++++ +d +++ +++   +l+    + +e ++++++l
  CCE29464.1  54 NPQTRIEEKLDDLTKGVADIPSKVCDEFMKRCVESEKQLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQQLQTK---SLEAkGLG-SELQSLKEQL 148
                 56778888888888766555555555555568888888888888888888888888888888888888888888764...33331223.6888888888 PP

    Prominin 304 eiekldtskcl....dqlpnvdevlealeevletnlssiv...keglarlneipekvknqtaevvp 362
                 +++k d+++++     +++ +de+ ++l+ev+  n s+      e  +r+ +i+++++  +++   
  CCE29464.1 149 QQQKADSQEKVagltTTIHGLDEEKRKLREVILGNASRHEvsdDEIRQRFVNIRQQIQAVVNNPAY 214
                 888888888876777777777777777777776665543211134456777777777766665544 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3  13.3   1.1e-05    0.0068     144     230 ..      91     177 ..      56     211 .. 0.80
   2 ?   -3.9   0.1       7.9   4.7e+03     177     198 ..     346     367 ..     344     373 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
    CALCOCO1 144 ralekEteLeRlkerakkalaqrkeeeaerkqlqakleqseeelrslskelqelrnslaerdtqvlqLqdtittltqkLttAqrkea 230
                 + ++k  e e l+ +++ + +q+k+e+a+ ++  ++l++   e + l +elq+l+++l++++++ ++    +tt+ + L++ +rk  
  CCE29464.1  91 QLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQQLQTKSLEAKGLGSELQSLKEQLQQQKADSQEKVAGLTTTIHGLDEEKRKLR 177
                 456777788888888888888888888888888778888888888888888888888888888887777777777777777777654 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7.9
    CALCOCO1 177 qakleqseeelrslskelqelr 198
                 + +l ++++e+ +l+++  +lr
  CCE29464.1 346 KLDLVKTQKEISQLCNDALSLR 367
                 6788999999999999987776 PP

>> YvrJ  YvrJ protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0011      0.64      17      32 ..      57      72 ..      57      76 .. 0.85
   2 ?   -1.0   0.0       2.1   1.3e+03      22      35 ..     158     171 ..     157     172 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
        YvrJ 17 vRiEkkLdeLtksIee 32
                +RiE+kLd+Ltk + +
  CCE29464.1 57 TRIEEKLDDLTKGVAD 72
                7**********97766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.1
        YvrJ  22 kLdeLtksIeeLse 35 
                 k   Lt++I+ L e
  CCE29464.1 158 KVAGLTTTIHGLDE 171
                 6677******9987 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  10.5    0.0003      0.18     108     231 ..      47     185 ..      46     234 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0003
     DUF4407 108 Idaelaeeqqeeakelkeqlaaa..................ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakek 188
                 Id++  e+ q +++e  + l++                   ++++l +  ++ ++l++e+++++++l++++a+ q+++++ +++     +G g + ++ 
  CCE29464.1  47 IDTRTSENPQTRIEEKLDDLTKGvadipskvcdefmkrcveSEKQLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQQLQTKS-LEAKGLGSELQSL 144
                 5566666666666666666666666777778888777777778888888888889999999999999999999999999755544.5579999999999 PP

     DUF4407 189 kaqldaaqaelaelkakldatarlaalraelaeleaerakera 231
                 k+ql++++a+ +e  a    t+++  l++e+ +l++ +  +++
  CCE29464.1 145 KEQLQQQKADSQEKVAG--LTTTIHGLDEEKRKLREVILGNAS 185
                 99999999998887777..777777777777776655444444 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.0    0.0029       1.7      36      65 ..      88     117 ..      87     119 .. 0.91
   2 ?    7.9   2.7    0.0056       3.3      37      65 ..     124     152 ..     122     154 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0029
  Cep57_CLD_2  36 alrqLgvAyeelneLkaevealrkELkeqr 65 
                  +++qL  +  e++eL++ev +l+k+Lk ++
   CCE29464.1  88 SEKQLVTKSKEAEELRSEVQSLKKQLKQEK 117
                  6899**********************9865 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0056
  Cep57_CLD_2  37 lrqLgvAyeelneLkaevealrkELkeqr 65 
                  ++qL+ + +e+  L +e+ +l+++L+ q+
   CCE29464.1 124 VQQLQTKSLEAKGLGSELQSLKEQLQQQK 152
                  79************************997 PP

>> GldM_N  GldM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   9.0   0.00067       0.4      18     131 ..     100     216 ..      86     243 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00067
      GldM_N  18 enasekNaalyasleakaeenpekakewlekAkevkkksdelynyiealKeeivkeaggkdedvgeikakd.nldaaselmlaeg..ksgkGkeLkkki 113
                 e++ ++ ++l ++l+++ +++++k++++ +k+ e+k + +el +  e+l ++ +++ ++  + +++i   d ++ ++ e++l +   ++    e++++ 
  CCE29464.1 100 EELRSEVQSLKKQLKQEKADSQDKVQQLQTKSLEAKGLGSELQSLKEQLQQQKADSQEKVAGLTTTIHGLDeEKRKLREVILGNAsrHEVSDDEIRQRF 198
                 455677788888888888888888888888888888888888888888888887777777777*******9678899*****66667778889****** PP

      GldM_N 114 neyreellklvnd..lakda 131
                  + r++++++vn+     d+
  CCE29464.1 199 VNIRQQIQAVVNNpaY--DK 216
                 ************9442..22 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  14.1    0.0013      0.78       8      79 ..      86     162 ..      75     166 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0013
  Phage_GP20   8 kaengkdit.kakldeveeerdtlkeqlk....drdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadl 79 
                 ++++++ +t  ++ +e+ +e+++lk+qlk    d + ++++L++k+ +++ L  ++++l+++++++ka++++k+a l
  CCE29464.1  86 VESEKQLVTkSKEAEELRSEVQSLKKQLKqekaDSQDKVQQLQTKSLEAKGLGSELQSLKEQLQQQKADSQEKVAGL 162
                 3678899986556778888888888888622225577899*********************************9876 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  10.3    0.0015      0.91      36     137 ..      73     179 ..      50     235 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0015
       PIN_8  36 vPhqvalEfqrnresvis...kekkayedlekeleklkkaaekkleealkkwakkkaldteelr.kelkkqleelkeel....kaeleelkksskadke 126
                 +P  v  Ef ++  +  +   +++k +e+l++e+++lkk++++   e++++++k ++l+t+ l+ k l ++l++lke+l      ++e++ + ++++  
  CCE29464.1  73 IPSKVCDEFMKRCVESEKqlvTKSKEAEELRSEVQSLKKQLKQ---EKADSQDKVQQLQTKSLEaKGLGSELQSLKEQLqqqkADSQEKVAGLTTTIHG 168
                 89********765433332448999999999999999999995...55555555566664444314466666666666632222222333333333333 PP

       PIN_8 127 edpilkkleel 137
                  d+ ++kl+e+
  CCE29464.1 169 LDEEKRKLREV 179
                 34444444444 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   8.7   0.00079      0.47      28     181 ..      81     225 ..      61     261 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00079
  V_ATPase_I  28 evrrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeeeeeee 126
                  ++rc e e++l   ++e e+l+++v++ +++ ++++a++++++++l+++  +++   +el++ +e+l++++ + +e+ a l+++ + l+ee+++ +e 
  CCE29464.1  81 FMKRCVESEKQLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQQLQTKSLEAKGLGSELQSLKEQLQQQKADSQEKVAGLTTTIHGLDEEKRKLREV 179
                 479999999999999999999999999999999999999999999999999999999999999999999999999999999999888888664444433 PP

  V_ATPase_I 127 eseeeeeekeeeeeeeseeeeeeelleeeeelsfvaGvikrekveaferilwral 181
                    ++++  +e +++e+    +++  +     + +  v+++    + + ++ ra 
  CCE29464.1 180 ILGNASR--HEVSDDEI----RQRFVNI---RQQIQAVVNNPAYDKTREFMHRAA 225
                 3322222..11222222....2222221...134556666665555555555555 PP

>> DUF935  Protein of unknown function (DUF935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.7   9.7e-05     0.058     399     503 ..       5     119 ..       3     141 .. 0.70
   2 ?   -0.4   1.6      0.62   3.7e+02     372     419 ..     118     167 ..     113     249 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.7e-05
      DUF935 399 klglpepeedeevlkaaesaepeaaaapaalaakaaa......alaaaaaaeaaeqdaldaladealeeaeaalepllapv....lelleeaesleelr 487
                 k ++p++++   vl+a+ s+++++++++ a+ ++a +      +++++++ +++ +++ld+l++ +++  +++ ++++++     ++l+ ++++ eelr
  CCE29464.1   5 KNQVPKQKTFSSVLMASPSDPNPHQPKRPARDEDAGKratciiDTRTSENPQTRIEEKLDDLTKGVADIPSKVCDEFMKRCveseKQLVTKSKEAEELR 103
                 6689999999999997777777666666555555555776776555667777777788888888887777777777666552222689*********** PP

      DUF935 488 erlaelypdmdaeela 503
                  ++++l +++++e+  
  CCE29464.1 104 SEVQSLKKQLKQEKAD 119
                 ******9999887654 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.62
      DUF935 372 eDlkalae..alekLvelGlrvpqsevrdklglpepeedeevlkaaesae 419
                 +D +  ++  +++ L   Gl  + + ++++l+ ++++ +e+v+  +++ +
  CCE29464.1 118 ADSQDKVQqlQTKSLEAKGLGSELQSLKEQLQQQKADSQEKVAGLTTTIH 167
                 34433333003455777788888888888888888888888877222222 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  16.8    0.0015      0.93     605     726 ..      82     209 ..      53     236 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0015
     DUF3584 605 rerlqaleealqsaeakqkqaeeelkqlnaeleeakravaeaatalknardtlerlqnekesekdklekaiaerkqqa...eeqlqkldaqlkqlee.. 698
                  +r    e++l +++++++++ +e+++l+++l+++k+  +++ ++l+ + ++ + l +e +s+k++l+++ a+ ++++    + ++ ld+++  l e  
  CCE29464.1  82 MKRCVESEKQLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQQLQTKSLEAKGLGSELQSLKEQLQQQKADSQEKVaglTTTIHGLDEEKRKLREvi 180
                 556667799999999999999999999999999999999999999999999999999999999998888777666554222345555555555554422 PP

     DUF3584 699 .qqkaaleelkedlseerlekkakwqevv 726
                  ++++  e  +++++++ ++ ++++q+vv
  CCE29464.1 181 lGNASRHEVSDDEIRQRFVNIRQQIQAVV 209
                 23344444444555555555555555544 PP

>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   8.9     0.039        23     102     169 ..      80     150 ..      70     152 .. 0.79
   2 ?    7.2   2.1    0.0066         4     112     159 ..     125     172 ..     123     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.039
  Bacillus_HBL 102 ellellekLqeeiqqnqkevkqlikeLkklklklakdsknFktdvdelt.silagds..gvisqlqneied 169
                   e++++  + ++++++++ke+++l  e+++lk++l++++++ + +v++l+ + l++++   +++ l++++++
    CCE29464.1  80 EFMKRCVESEKQLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQQLQtKSLEAKGlgSELQSLKEQLQQ 150
                   6666667778999********************************99862566665544677777777765 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0066
  Bacillus_HBL 112 eeiqqnqkevkqlikeLkklklklakdsknFktdvdeltsilagdsgv 159
                   +++q+++ e+k l  eL++lk++l++ +++ +++v+ lt +++g + +
    CCE29464.1 125 QQLQTKSLEAKGLGSELQSLKEQLQQQKADSQEKVAGLTTTIHGLDEE 172
                   578999999******************************999886655 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.6    0.0033         2      24     114 ..      91     185 ..      78     195 .. 0.81
   2 ?   -1.9   0.0       5.5   3.3e+03      51     107 ..     192     245 ..     184     260 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0033
                      HHHHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHH...HHHHHHT.-BTCCG-S--.HHHHHHHHHHHHHHHHHS--EESEEES-S CS
  Cob_adeno_trans  24 prveayGtvDelnsaiglarallaeeeeelkeaLeeiqneLfd...lgaelatpekkkekkkit.eeeveelekeideleaelpplksfilpgg 113
                      + v+   + +el s +  ++++l++e+++ +++++++q++ ++   lg+el + +++ +++k + +e+v+ l + i+ l++e  +l++ il + 
       CCE29464.1  91 QLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQQLQTKSLEakgLGSELQSLKEQLQQQKADsQEKVAGLTTTIHGLDEEKRKLREVILGNA 184
                      5555556789*************999999999999999985542337888876677888888887899********************999766 PP

                      S CS
  Cob_adeno_trans 114 s 114
                      s
       CCE29464.1 185 S 185
                      5 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.5
                      HHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHHHHS--EES CS
  Cob_adeno_trans  51 eelkeaLeeiqneLfdlgaelatpekkkekkkiteeeveelekeideleaelpplks 107
                      +e+++++ +i +++  + ++ a +   k+++ ++ ++ ++ e +i++  ++++p ++
       CCE29464.1 192 DEIRQRFVNIRQQIQAVVNNPAYD---KTREFMHRAAANDFELRIHQRYNSYSPEDR 245
                      566666777777766666666543...333334455566777777754444444444 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.1    0.0041       2.5      12      91 ..      83     164 ..      61     208 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0041
       TMPIT  12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpk 91 
                 k++ e++k++ +k++e ++l s++++  k+ k++  + ++++++l++++   +   +e+++lke+l+++k+  +e  + l+ 
  CCE29464.1  83 KRCVESEKQLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQQLQTKSLeaKGLGSELQSLKEQLQQQKADSQEKVAGLTT 164
                 5566666666666666666666666666666666666666666666653222222344555555555555544443333333 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   8.2    0.0033         2     101     155 ..      97     151 ..      82     157 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0033
  Fzo_mitofusin 101 stfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekf 155
                    +  ++l+++v+  +k+l++e ++ + ++++l++ + +ak l  + ++l+++L++ 
     CCE29464.1  97 KEAEELRSEVQSLKKQLKQEKADSQDKVQQLQTKSLEAKGLGSELQSLKEQLQQQ 151
                    45689***********************************************985 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  19.5    0.0093       5.6       3      99 .]      80     176 ..      79     176 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0093
  HIP1_clath_bdg   3 dLLrKnAevtkqlsvarqaqeeverekkeleeelerlkeeaerkle...eqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLqa 94 
                     + +++  e  kql    ++ ee+  e + l+++l++ k++++ k++    ++ e + L +el++ +++l++ k+   +s+++ + l++++++L++
      CCE29464.1  80 EFMKRCVESEKQLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQqlqTKSLEAKGLGSELQSLKEQLQQQKA---DSQEKVAGLTTTIHGLDE 171
                     56888899999999999999999999999999999999998888774334555566677777777776665553...5666667899******** PP

  HIP1_clath_bdg  95 EkesL 99 
                     Ek +L
      CCE29464.1 172 EKRKL 176
                     **987 PP

>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.9    0.0025       1.5      54     113 ..      69     129 ..      53     131 .. 0.79
   2 ?    3.2   1.1      0.24   1.4e+02      82     113 ..     140     171 ..     131     173 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0025
      KfrA_N  54 raapelPealaeallaalwqaaleeaee..elaaaraelqaaraaleaeraeaearveelea 113
                  + +++P  + ++ +++  ++ +++  +  e +++r+e+q+  ++l++e+a+ + +v++l++
  CCE29464.1  69 GV-ADIPSKVCDEFMKRCVESEKQLVTKskEAEELRSEVQSLKKQLKQEKADSQDKVQQLQT 129
                 33.48899999888888888888865555589999******************999999986 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.24
      KfrA_N  82 elaaaraelqaaraaleaeraeaearveelea 113
                 el++++++lq++ a+ ++++a ++ ++  l++
  CCE29464.1 140 ELQSLKEQLQQQKADSQEKVAGLTTTIHGLDE 171
                 78889999999999999999888887776665 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  17.4     0.013       7.8      18     136 ..      82     202 ..      58     208 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
       Mod_r  18 lealvktlpevkqlkeekeellaeneslaeknlsl.epeleelrselqekleelkelekefeekeqeldellqkfspdallarLqtavaeaeeeSeala 115
                 +++ v++ +++ +  +e eel+ e +sl + +l++ + + +++ ++lq k  e+k l +e++ ++++l++  qk +++   a L t ++  +ee ++l 
  CCE29464.1  82 MKRCVESEKQLVTKSKEAEELRSEVQSLKK-QLKQeKADSQDKVQQLQTKSLEAKGLGSELQSLKEQLQQ--QKADSQEKVAGLTTTIHGLDEEKRKLR 177
                 444454445555666667777666666644.444436688888888888888888888888888888766..566677777778888888888888888 PP

       Mod_r 116 eefl.e...geieldeFvkefkekR 136
                 e +l +    e + de  ++f + R
  CCE29464.1 178 EVILgNasrHEVSDDEIRQRFVNIR 202
                 8777654333333355555666666 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.1    0.0062       3.7      34      67 ..      90     123 ..      86     125 .. 0.90
   2 ?    6.8   4.9     0.014       8.4      34      66 ..     125     157 ..     122     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0062
      Csm1_N  34 qkletkdqeiesLkeqlaeleekvkeleerrkkq 67 
                 ++l tk++e e+L+ ++++l++++k+ + +++++
  CCE29464.1  90 KQLVTKSKEAEELRSEVQSLKKQLKQEKADSQDK 123
                 7899**********************99888765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.014
      Csm1_N  34 qkletkdqeiesLkeqlaeleekvkeleerrkk 66 
                 q+l+tk+ e + L  +l++l+e++++++ ++++
  CCE29464.1 125 QQLQTKSLEAKGLGSELQSLKEQLQQQKADSQE 157
                 99***********************99988776 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  22.2     0.029        17      19      93 ..      97     179 ..      82     227 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHH..........HHHHHHHHHHH CS
        OmpH  19 aaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqe..........lqkkqqellkp 93 
                 +  e+l ++ ++l+++l++++++ q+++++lq+k+ +   +    elq ++++lqq+++  +++          l +++++l++ 
  CCE29464.1  97 KEAEELRSEVQSLKKQLKQEKADSQDKVQQLQTKSLE--AKGLGSELQSLKEQLQQQKADSQEKvagltttihgLDEEKRKLREV 179
                 3344566666888888888888888888888855544..6777788999999999954444444566666666666666666554 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.5    0.0062       3.7      17      68 ..      78     129 ..      61     137 .. 0.76
   2 ?    3.8   1.6      0.15        88       8      57 ..     139     185 ..     132     219 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0062
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXX CS
        YabA  17 leelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelse 68 
                  +e++++  e +++l++  +e +eL+ e ++l+++l++e++++++k ++l++
  CCE29464.1  78 CDEFMKRCVESEKQLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQQLQT 129
                 467778888889999999******************8777777777766554 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXX CS
        YabA   8 dkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeek 57 
                 ++l++l+eql++ +   ++ +e++a l+   + L  e++klre +  + +
  CCE29464.1 139 SELQSLKEQLQQQK---ADSQEKVAGLTTTIHGLDEEKRKLREVILGNAS 185
                 44455555444433...344556666666667777777777777633333 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  16.8     0.018        11      38     172 ..      15     153 ..       5     157 .. 0.67
   2 ?    4.1   3.5     0.078        46      90     142 ..     145     197 ..     138     210 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.018
       ATG16  38 naklekaaasakssksskksakekeasasq....snskqsakiqsleqklaqlreelael.yksrgelaqrllelneelqkleeklkedeerlaeleae 131
                 ++ l +++++ ++  ++k++a  + a +++    ++ ++++  +  e+kl  l + +a+   k + e+ +r +e +++l ++ ++++e ++++++l+++
  CCE29464.1  15 SSVLMASPSDPNP-HQPKRPARDEDAGKRAtciiDTRTSENPQTRIEEKLDDLTKGVADIpSKVCDEFMKRCVESEKQLVTKSKEAEELRSEVQSLKKQ 112
                 4444333333333.2222222222222222577766666777777777777777777776468888888888888888888888888888888888888 PP

       ATG16 132 raaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEe 172
                  ++ +   +d+ ++l+ k    + l  El++L+ ql+q+ +
  CCE29464.1 113 LKQEKADSQDKVQQLQTKSLEAKGLGSELQSLKEQLQQQKA 153
                 88888888888888888888888999999999888888755 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.078
       ATG16  90 laelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdr 142
                  ++l+++++++++++  l+++++ l+e+ ++ +e +    +++++  +++++r
  CCE29464.1 145 KEQLQQQKADSQEKVAGLTTTIHGLDEEKRKLREVILGNASRHEVSDDEIRQR 197
                 33444455555555555555555555555555555555555555555555554 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.3     0.023        14      38      73 ..      90     125 ..      81     129 .. 0.82
   2 ?    3.9   4.3      0.13        75      40      70 ..     127     157 ..     120     180 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.023
  Fungal_TACC  38 kkldklelenkslkqeieqLkkqleaerkEKqeLlk 73 
                  k+l   ++e ++l++e+++Lkkql+ e+++ q+ ++
   CCE29464.1  90 KQLVTKSKEAEELRSEVQSLKKQLKQEKADSQDKVQ 125
                  56666788999****************999887666 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.13
  Fungal_TACC  40 ldklelenkslkqeieqLkkqleaerkEKqe 70 
                  l+  +le k+l +e+++Lk+ql+ ++++ qe
   CCE29464.1 127 LQTKSLEAKGLGSELQSLKEQLQQQKADSQE 157
                  3334456666777777777777666655444 PP

>> Rho_Binding  Rho Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   9.5     0.028        17       3      45 ..      90     130 ..      88     134 .. 0.86
   2 ?    5.0   4.3     0.072        43       4      40 ..     126     163 ..     125     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.028
  Rho_Binding   3 kdvenlakekeelnkklkkleeelekak.eeeeeieklkasyek 45 
                  k++ +++ke eel +++++l+++l+++k ++++++++l+    k
   CCE29464.1  90 KQLVTKSKEAEELRSEVQSLKKQLKQEKaDSQDKVQQLQ---TK 130
                  788899**********************77888888888...44 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.072
  Rho_Binding   4 dvenlakekeelnkklkkleeelekak.eeeeeieklk 40 
                  ++++++ e + l ++l++l+e+l+++k +++e+++ l 
   CCE29464.1 126 QLQTKSLEAKGLGSELQSLKEQLQQQKaDSQEKVAGLT 163
                  67889999*******************66777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2463  (0.137375); expected 358.6 (0.02)
Passed bias filter:                      892  (0.0497518); expected 358.6 (0.02)
Passed Vit filter:                       165  (0.00920297); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 2798.62
//
Query:       CCE29465.1  [L=480]
Description: related to hsp70 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-14   52.6   0.0    8.7e-14   50.6   0.0    2.0  1  HSP70     Hsp70 protein
    1.4e-06   27.4   0.1    4.6e-05   22.4   0.1    2.4  3  MreB_Mbl  MreB/Mbl protein
  ------ inclusion threshold ------
      0.011   16.6   0.0       0.03   15.2   0.0    1.7  1  PE_PPE_C  Polymorphic PE/PPE proteins C terminal
      0.013   15.8   0.0      0.029   14.8   0.0    1.5  1  RuvX      Holliday junction resolvase


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   1.9e-17   8.7e-14     113     363 ..     134     398 ..      22     402 .. 0.71

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 1.9e-17
                 HHHHHHHHHHHHH.HHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS....SCEEEEEEEEXSSXEEEEEEEEE CS
       HSP70 113 isamvLkklketa.eaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd....kernvlvyDlGggtfdvSilele 206
                 i a  L+ + + + +ay++   ++ v++vPa + da ++at  A+++AG++ + +v ep Aaal Y ++  d    ke + ++ D Gggt d    e+ 
  CCE29465.1 134 IYAHALEDISSSVpKAYMDMCHKEFVLSVPAVWSDAAKNATLKAAELAGIKPVTVVKEPEAAAL-YSIKTLDfsikKEDVFVICDAGGGTVDLISYEVL 231
                 4455555555553255666667889**************************************9.***999999988899999*********7666665 PP

                 TT..EEEEEEEEEETTXSHHHHHHHHHHHH...HHHHHHHHSXXGGGSHHHHHHHHHHH.HHHHHHTTTSSCSE..EEEEEEEEETTT....EEEEEEE CS
       HSP70 207 kG..vfevkaTagDthlGGedfDealvehl...veefkkkegidlskdkkalqrlkeaa.ekaKkeLSsskqte..inleietvdedg....kdlsekl 293
                     +++vk        GG      l + +   vee+  +++  + k +ka++  +++  +++Kk++S + ++e  +n+++  + +d+    +  + kl
  CCE29465.1 232 ATtpQLKVKE--LVPGTGGMAGSLGLNQRFaaaVEELVGDHQWPTFKMSKAWSFAEKQFdQEIKKAFSGALEEEylVNFPMAKLGDDEshglESNTWKL 328
                 5412566654..44444555544444444401134444556666666666666655554156899999876655226777777776653123345679* PP

                 EHHHHHHHHHHHHHHTHHHHHHHHHHCTEE..GGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTH CS
       HSP70 294 sRakfeelvedllertlepvekalkdaklk..keeidevvlvGGstRiPkvqelvkelfgkepsktvnpDea 363
                 +  ++ ++ e+l+ ++++ +e+ +++ ++k    ei+ v lvGG      + ++vke f +   + ++pD+a
  CCE29465.1 329 TGFELRRIFEPLIVDIVQMIEHQVQQVRMKrpGTEISGVFLVGGFGSSHYLMQRVKEHFHQ--IQVLQPDDA 398
                 *****************************96669************999********9986..456677776 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1     1e-08   4.6e-05      89     164 ..     151     228 ..     128     240 .. 0.82
   2 ?    2.4   0.0     0.013        57     203     313 ..     291     404 ..     283     417 .. 0.76
   3 ?   -3.5   0.0      0.76   3.4e+03     161     187 ..     453     479 ..     452     479 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1e-08
                 S-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHT....T--TTSSS-EEEEEE-SS-EEEEEEET CS
    MreB_Mbl  89 kslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGa....glpveepsgnmvvdiGggttevavisl 164
                   + +++ v++vP   ++  ++A  +aa+ aG + v++++ep aAA+ +    +  +++    +++d Gggt ++  is+
  CCE29465.1 151 MDMCHKEFVLSVPAVWSDAAKNATLKAAELAGIKPVTVVKEPEAAALYSiktlDFSIKKEDVFVICDAGGGTVDL--ISY 228
                 456788999*************************************9654444899****************774..555 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.013
                 HHHHHH-BSS--HHHH..EEEEEEEETTTTCE.EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH. CS
    MreB_Mbl 203 kikieigsavkeeeee..kmeikGrdlvtglp.kevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseet. 297
                 +ik++ + a +ee      m   G d  +gl   + +++  e+r+  +  +  iv+++++  +++     +  +  g++l+GG +  + l + ++e++ 
  CCE29465.1 291 EIKKAFSGALEEEYLVnfPMAKLGDDESHGLEsNTWKLTGFELRRIFEPLIVDIVQMIEHQVQQVRMKRPGTEI-SGVFLVGGFGSSHYLMQRVKEHFh 388
                 56666666666555443466677888888986256799999999999999999999999999999887665444.699****98888888888877763 PP

                 SS-EEE-SSTTTHHHH CS
    MreB_Mbl 298 glpvkvaedpltcvak 313
                 +++v   +d+  +++k
  CCE29465.1 389 QIQVLQPDDAWAAIVK 404
                 7999999999888876 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.76
                 EEETTEEEEEEEES-SHHHHHHHHHHH CS
    MreB_Mbl 161 vislggivtsksvrvaGdeldeaiiky 187
                 v++l + v++ s+ v G+e+ +a ++y
  CCE29465.1 453 VVTLKSAVMTFSMEVDGEEMGSAEVDY 479
                 788999999999*****9998876655 PP

>> PE_PPE_C  Polymorphic PE/PPE proteins C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   6.6e-06      0.03      13      49 ..     160     196 ..     159     220 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.6e-06
    PE_PPE_C  13 LSVPpsWaaaapaasaaaaalsgttaaaaaaaagaal 49 
                 LSVP+ W+ aa  a+  aa l g+++++  ++++aa+
  CCE29465.1 160 LSVPAVWSDAAKNATLKAAELAGIKPVTVVKEPEAAA 196
                 9********************8888888888877664 PP

>> RuvX  Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   6.4e-06     0.029       2      47 ..      21      67 ..      20      83 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.4e-06
                -EEEEEESSSEEEEEEE-S--SS---EEEEE.---HHHHHHHHHHHH CS
        RuvX  2 rilglDvGtkriGvAvsdplgilaspletie.rkskekdleelkelv 47
                +i++lD+Gt   GvA++  +++ a+p+ +++  +++  ++ ++  ++
  CCE29465.1 21 VIIALDFGTTYSGVAYCFANQTNAKPIAIMKwPGNRGISAPKIPTII 67
                79***************************997776644445554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3350.06
//
Query:       CCE29466.1  [L=405]
Description: uncharacterized protein CPUR_03159 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0029   17.3   3.5      0.024   14.3   3.7    2.2  2  Phage_GPO      Phage capsid scaffolding protein (GPO) serine 
  ------ inclusion threshold ------
      0.034   13.7   0.1       0.29   10.7   0.0    2.4  2  YvrJ           YvrJ protein family
       0.23   11.0   7.9       0.36   10.4   7.9    1.2  1  Snf7           Snf7
       0.32   11.0   3.2         15    5.6   1.7    3.1  2  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
       0.37   10.5   4.7       0.69    9.6   4.7    1.5  1  TEX13          Testis-expressed sequence 13 protein family
       0.51   10.4   6.3       0.47   10.5   3.5    2.4  2  Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
       0.61    9.7  12.8        1.6    8.3  12.8    1.8  1  DUF4795        Domain of unknown function (DUF4795)
        2.7    8.2   9.2          5    7.3   9.2    1.3  1  CENP-Q         CENP-Q, a CENPA-CAD centromere complex subunit
        9.1    6.9   7.6        5.5    7.6   3.1    2.6  2  Syntaxin-6_N   Syntaxin 6, N-terminal
        9.1    6.7  14.0        7.2    7.0   5.5    2.3  2  DUF4200        Domain of unknown function (DUF4200)


Domain annotation for each model (and alignments):
>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   3.7   1.3e-05     0.024     145     267 ..      16     150 ..       6     156 .. 0.76
   2 ?   -0.4   0.0       0.4   7.3e+02      21      46 ..     211     236 ..     206     242 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.3e-05
   Phage_GPO 145 akrkqspenlftaavetalefeeeeeeeegeslferikallskkkksdd.......arfadveeavelvAeevkelsekveallaleaelaalkkevek 236
                 ++ k sp+ lf+  ++  +e + e+ +e+ ++l + i + + k++++++       ++++d++  ++ v    ++l++kv+++++  +e+++lkk++e+
  CCE29466.1  16 ETSKASPDLLFSGNCQLRIEAKVENLSESVANLPTIICKEFIKQHAKSEkqleiksKEAHDLRLELQSVKGLKEQLEKKVKTASTYWSEVQSLKKQLEN 114
                 567999*******************99999*****9988888888777633333335555666666666666677777777777777788888888877 PP

   Phage_GPO 237 lka....eleaLkekLsktda.kekqrpeatGeege 267
                 +k+    +++ L++++ + d+ k+k r+ + G++ +
  CCE29466.1 115 EKTycrdKVAGLTTTIRELDEdKKKLREVILGNTVH 150
                 77766669999******9999788889999996654 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.4
   Phage_GPO  21 ewleqmaanYdpkvYgArinleHlks 46 
                 +++  +a++Y+p+ + + + l+H  +
  CCE29466.1 211 RDIFGLAESYSPARHDSEVRLDHALG 236
                 667789*****************865 PP

>> YvrJ  YvrJ protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016      0.29      18      35 ..      33      50 ..      32      51 .. 0.92
   2 ?   -0.2   0.0      0.42   7.5e+02      23      35 ..     123     135 ..     121     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
        YvrJ 18 RiEkkLdeLtksIeeLse 35
                RiE+k ++L++s+ +L +
  CCE29466.1 33 RIEAKVENLSESVANLPT 50
                ***************987 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.42
        YvrJ  23 LdeLtksIeeLse 35 
                    Lt++I+eL e
  CCE29466.1 123 VAGLTTTIRELDE 135
                 5679*******86 PP

>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   7.9    0.0002      0.36      19     155 ..      33     171 ..      29     183 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHCTCCHHHHHHHHHHH CS
        Snf7  19 slekkikkleaelkklakkgnkdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkam...nkkvdidkidklmdeie 114
                 ++e k+++l +++++l   + k+  ++ +K  k++e   +++ + + +l++v    e+l+++ +++ ++ +  + +k++    k+   dk+  l   i+
  CCE29466.1  33 RIEAKVENLSESVANLPTIICKEFIKQHAKSEKQLEIKSKEAHDLRLELQSVKGLKEQLEKKVKTASTYWSEVQSLKKQlenEKTYCRDKVAGLTTTIR 131
                 799***************************************************************************9886777788*********** PP

                 HHHHHHTCHHHHHHHHHTT-GGTTHHHHHHHHHHHHHHHHH CS
        Snf7 115 dqmekaeeisEalsrslddadeedEeeleaeLdaLeqelgd 155
                 +  e  + + E++  +    +++++ ++++ + +L q++++
  CCE29466.1 132 ELDEDKKKLREVILGNTVH-QKISDGDIKQLFANLRQQIQA 171
                 ***********99888855.9****************9865 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.23   4.2e+02      90     106 ..      34      50 ..      29      56 .. 0.78
   2 ?    5.6   1.7    0.0084        15      63      87 ..     145     180 ..      61     183 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.23
  Baculo_PEP_C  90 lnsiltnLlssvtNins 106
                   +++++ nL  sv+N+ +
    CCE29466.1  34 IEAKVENLSESVANLPT 50 
                   67788888888888765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0084
  Baculo_PEP_C  63 t...........rldtlltnLtdalnalqdtlrneL 87 
                               ++++l++nL ++++al+++l+ eL
    CCE29466.1 145 LgntvhqkisdgDIKQLFANLRQQIQALANNLSYEL 180
                   033344444445666666666666666666555554 PP

>> TEX13  Testis-expressed sequence 13 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.7   0.00039      0.69      81     147 ..      79     145 ..      58     148 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00039
       TEX13  81 lqarrvqkLqdqveehksaaqaLaselkrlreqqemerkeaasqlqlaqaalaevqkerdlLrkkll 147
                 l+ + v+ L++q+e++  +a++  se++ l++q e e+   + +    +++++e+ ++++ Lr+ +l
  CCE29466.1  79 LELQSVKGLKEQLEKKVKTASTYWSEVQSLKKQLENEKTYCRDKVAGLTTTIRELDEDKKKLREVIL 145
                 566889***************************************999**********999998665 PP

>> Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.5   0.00026      0.47       3      27 ..      84     115 ..      82     117 .. 0.90
   2 ?   -2.0   0.0       2.1   3.8e+03      19      28 ..     164     173 ..     162     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00026
  Bap31_Bap29_C   3 iekLkkeLkkkk.......kDlealKkQaegl 27 
                    ++ Lk++L+kk        ++++ lKkQ e+ 
     CCE29466.1  84 VKGLKEQLEKKVktastywSEVQSLKKQLENE 115
                    899******9889999*************985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.1
  Bap31_Bap29_C  19 alKkQaegla 28 
                    +l++Q++ la
     CCE29466.1 164 NLRQQIQALA 173
                    7999999987 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  12.8   0.00088       1.6      18     156 ..      33     183 ..      29     205 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00088
     DUF4795  18 klqeelekleekvkelekrledkekklealkkqieelekvkadkeeveeel.aekadkeaLatkvsrdq.....fDeakkeLekmleellekle...eq 107
                  +++++e+l+e+v++l++ +  +++ ++ + k+ ++le + ++ +++ +el ++k  ke+L++kv         +++ kk+Le+  +  ++k+      
  CCE29466.1  33 RIEAKVENLSESVANLPTII--CKEFIKQHAKSEKQLEIKSKEAHDLRLELqSVKGLKEQLEKKVKTAStywseVQSLKKQLENEKTYCRDKVAgltTT 129
                 58889999999999999865..78889999999999999999999999999558999999999998888999999999999999998888885533333 PP

     DUF4795 108 eealkkaldtLq.....eelkekldrlelepLkeqleerlkelqkelqeameke 156
                  ++l++  ++L+     + + +k+   ++++L  +l +++++l+++l   ++++
  CCE29466.1 130 IRELDEDKKKLRevilgNTVHQKISDGDIKQLFANLRQQIQALANNLSYELHPQ 183
                 333333333333444458899999977777777777777777777766555554 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.2    0.0028         5      28     151 ..      64     177 ..      55     179 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0028
      CENP-Q  28 eklldekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaearerkeklkkehvllqesdseelslleassdevlgeasgtvfsdlep 126
                 ek l+ k  +   L+ el+s++ L++++ek +++      + ++L+k+ ++e+   ++k   +    +e d+++++l+e+           tv ++++ 
  CCE29466.1  64 EKQLEIKSKEAHDLRLELQSVKGLKEQLEKKVKTASTYWSEVQSLKKQLENEKTYCRDKVAGLTTTIRELDEDKKKLREVIL-------GNTVHQKIS- 154
                 5666677777788899999999999999999999999999999999999999999666555544455544444444444443.......355667776. PP

      CENP-Q 127 eldeellpllqqLgshLesmrgnla 151
                   d ++++l+++L+++ + + +nl+
  CCE29466.1 155 --DGDIKQLFANLRQQIQALANNLS 177
                 ..99****************99986 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.2   2.1e+03      53      80 ..      34      73 ..      29      86 .. 0.45
   2 ?    7.6   3.1    0.0031       5.5       7      82 ..      88     159 ..      85     201 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.2
  Syntaxin-6_N 53 iewdledLeetv............riveknpskfkideke 80
                  ie ++e+L e+v            +   k++++ +i++ke
    CCE29466.1 34 IEAKVENLSESVanlptiickefiKQHAKSEKQLEIKSKE 73
                  6666777777773333222221111111122223333333 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0031
  Syntaxin-6_N   7 keeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpskfkidekels 82 
                   ke+ +k++++a +  ++ ++l+++ + +++  +++    L +++r++++d + L+e++     n  + ki++ +++
    CCE29466.1  88 KEQLEKKVKTASTYWSEVQSLKKQLE-NEKTYCRDKVAGLTTTIRELDEDKKKLREVI---LGNTVHQKISDGDIK 159
                   56667777777666666666554443.5699999999*********************...444444445444443 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.5     0.004       7.2      65     110 ..      57     102 ..      53     108 .. 0.91
   2 ?    4.9   1.1     0.019        34      30      90 ..     106     166 ..     102     178 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.004
     DUF4200  65 lkkaeeerklkkekeaeikklkaeietlkseiekleekleeykkYe 110
                 +k+ ++ +k+ + k +e ++l+ e++ +k  +e+le+k++  ++Y 
  CCE29466.1  57 IKQHAKSEKQLEIKSKEAHDLRLELQSVKGLKEQLEKKVKTASTYW 102
                 678889999999*****************************99995 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.019
     DUF4200  30 kqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeie 90 
                 ++ +++le+++ + +++++ ++  ++e d+ +++ ++ +   + ++k  + +ik+l a++ 
  CCE29466.1 106 QSLKKQLENEKTYCRDKVAGLTTTIRELDEDKKKLREVILGNTVHQKISDGDIKQLFANLR 166
                 6668999999999999999999999999999999999999999999999999998755433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1596  (0.0890178); expected 358.6 (0.02)
Passed bias filter:                      767  (0.0427799); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 2933.30
//
Query:       CCE29467.1  [L=520]
Description: uncharacterized protein CPUR_03160 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00066   19.2  44.9        0.2   11.1  32.5    3.2  3  Golgin_A5       Golgin subfamily A member 5
     0.0026   16.9  45.4       0.04   13.0  21.7    2.3  2  Atg14           Vacuolar sorting 38 and autophagy-related sub
     0.0057   16.8  12.3     0.0057   16.8  12.3    4.0  4  IFT20           Intraflagellar transport complex B, subunit 2
  ------ inclusion threshold ------
      0.025   14.6  48.2       0.19   11.8  32.6    2.8  2  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.035   12.3  38.8      0.053   11.7  38.8    1.3  1  HOOK            HOOK protein
      0.048   13.2   0.8        0.2   11.2   0.2    2.3  2  YvrJ            YvrJ protein family
       0.11   12.8  47.8       0.42   11.0   6.3    6.1  6  Csm1_N          Csm1 N-terminal domain
       0.13   11.3   0.0       0.22   10.5   0.0    1.3  1  SE              Squalene epoxidase
       0.18   12.1  47.9       0.83    9.9  18.9    2.8  2  Jnk-SapK_ap_N   JNK_SAPK-associated protein-1
        0.3   10.3  42.0          2    7.6   1.8    4.5  3  DUF2046         Uncharacterized conserved protein H4 (DUF2046
        0.3   10.7  40.8       0.58    9.8   8.1    3.3  3  Laminin_I       Laminin Domain I
       0.55   10.4  11.4        2.7    8.2   2.4    2.9  3  YwqJ-deaminase  YwqJ-like deaminase
        0.6   10.2  48.1       0.18   11.9  28.4    3.6  3  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
       0.63   10.7  31.0        0.9   10.2   7.7    3.9  3  YabA            Initiation control protein YabA
       0.63    8.9  45.5        1.1    8.0  25.7    2.2  2  Spc7            Spc7 kinetochore protein
        1.2    8.6   5.1         15    5.0   5.0    2.1  1  Mce4_CUP1       Cholesterol uptake porter CUP1 of Mce4, putat
        1.8    7.9  47.1       0.26   10.7  18.7    2.9  2  HMMR_N          Hyaluronan mediated motility receptor N-termi
        1.9    9.0  38.0        3.7    8.0   0.9    5.4  5  Fungal_TACC     Fungal Transforming acidic coiled-coil (TACC)
        2.4    8.6   6.1        0.8   10.1   0.6    3.1  3  IMPa_helical    Immunomodulating metalloprotease helical doma
        2.6    8.5  44.8       0.91    9.9  25.5    2.4  2  Fez1            Fez1
        2.8    7.7  28.2       0.12   12.2   4.2    3.9  3  Bacillus_HBL    Bacillus haemolytic enterotoxin (HBL)
        6.1    7.5  43.2        0.8   10.3  15.5    3.5  3  BST2            Bone marrow stromal antigen 2
        7.3    5.3  45.0         46    2.7  44.5    2.3  1  CALCOCO1        Calcium binding and coiled-coil domain (CALCO
        8.8    6.8  25.7         10    6.6   1.3    6.3  6  FlaC_arch       Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1  32.5   0.00027       0.2      37     165 ..      39     173 ..      12     176 .. 0.80
   2 !    6.5  26.6    0.0066       4.9      21     158 ..     101     233 ..     100     252 .. 0.67
   3 !    8.3   5.1    0.0019       1.4      68     175 ..     182     288 ..     175     296 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
   Golgin_A5  37 eglesstalsaeldelkqerdllreelqklnqqieqlrtelqd.lea..qqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvr 132
                 e ++   +++++l+  + e + lr+elq+l++q++q +++ qd +e+  ++++eae lr +lq+l++ql++e++ +++  +++e ++ e + l++el+ 
  CCE29467.1  39 EYMKRCIESEKQLETKHMEAEGLRSELQSLEKQLQQEKADSQDkVEQieKKSTEAEGLRSELQSLKKQLHQEKADSRDKVEQIETKSTEAEGLRSELQS 137
                 455556678899999999999**************99999876334321456899999****************9999999999999999999999998 PP

   Golgin_A5 133 skatlqsrikd...rekeieklrnqlttkslsssse 165
                  ++ lq++ ++     +e+++l++ql++++  s ++
  CCE29467.1 138 LRKRLQQESTEakgLRSELQSLKKQLQQEKADSREK 173
                 888888765441115689999999999887776555 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0066
   Golgin_A5  21 QsKekliasLkegsgeeglesstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerl 119
                 Qs  k +++ k +s  +++e  +++s+e + l++e + lr+ lq+ +++ + lr+elq l++q q+e   +re+++ +e + +e +  +  + + l+++
  CCE29467.1 101 QSLKKQLHQEKADS-RDKVEQIETKSTEAEGLRSELQSLRKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVELFEMKSTEAKGLRS-TLQSLRKQ 197
                 55555555556554.4555566778999999999999999999999999999******************9***9999988775555554.44444433 PP

   Golgin_A5 120 keelryleeelvrskatlqsrikdrekeieklrnqlttk 158
                        + + + + a l + i++ +++ +klr+ + t+
  CCE29467.1 198 ---SLQEKADSQDKVAGLTTTIQQLDEDKKKLREVILTQ 233
                 ...333344444444556666666666666666555444 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0019
   Golgin_A5  68 qqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaeler...lkeelryleeelvrskatlqsrikdrekeieklrnqlttk.slss 162
                 ++ + lr+ lq l +q  +e   ++++++ l +++++  + k+++++ +     l + lry  +       ++++r     + i+++ n+l+t+   s 
  CCE29467.1 182 TEAKGLRSTLQSLRKQSLQEKADSQDKVAGLTTTIQQLDEDKKKLREVILTqvnLGNTLRYQIS-----DDEIRQRFVYMRQSIQSVVNNLKTRdFISF 275
                 566789************************9998887666666666555440004455555332.....33445555555667**********944455 PP

   Golgin_A5 163 sseselesRlkqL 175
                    +++esRl+q 
  CCE29467.1 276 IAVNDFESRLHQC 288
                 6999*******96 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9  18.4   0.00048      0.36      30     136 ..      14     118 ..       2     120 .. 0.81
   2 !   13.0  21.7   5.4e-05      0.04      38     154 ..     111     230 ..     110     283 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00048
       Atg14  30 rlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleer 128
                 rl+++  + + l k +e  ++ k  +++  ++   + ++le++  + + lr++lq l+++l+q k+  ++k ++++k+s +    rs+l+sl+++l+++
  CCE29467.1  14 RLIRVERKLDNLSKGVE-NISLKL-CDEYMKRCIESEKQLETKHMEAEGLRSELQSLEKQLQQEKADSQDKVEQIEKKSTEAEGLRSELQSLKKQLHQE 110
                 45566666666655555.444444.55667788889999************************************************************ PP

       Atg14 129 rkkqiakl 136
                 ++++ +k+
  CCE29467.1 111 KADSRDKV 118
                 *9987776 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 5.4e-05
       Atg14  38 keslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkq...i 133
                 k+  + k+e+++++ +eae l++++++++++l++  ++   lr++lq lk++l+q k+  +ek + ++ +s + k  rs+l+sl+++  ++++++   +
  CCE29467.1 111 KADSRDKVEQIETKSTEAEGLRSELQSLRKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVELFEMKSTEAKGLRSTLQSLRKQSLQEKADSqdkV 209
                 5667889*******************************************************************************9988876551116 PP

       Atg14 134 aklqdaikrieqklsslsskt 154
                 a+l+++i++ ++ +++l+  +
  CCE29467.1 210 AGLTTTIQQLDEDKKKLREVI 230
                 666677776666666655544 PP

>> IFT20  Intraflagellar transport complex B, subunit 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8  12.3   7.7e-06    0.0057      41     109 ..      36     107 ..      30     114 .. 0.83
   2 ?    5.4   4.8     0.026        20      75     110 ..     108     143 ..     104     149 .. 0.80
   3 ?   -0.7  14.4         2   1.5e+03      42     108 ..     128     197 ..     117     203 .. 0.76
   4 ?    1.0   9.6      0.62   4.6e+02      38     112 ..     156     233 ..     153     239 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.7e-06
       IFT20  41 lvkelievleelakkvekeKlkAigarnllkseakqreaeqqqlq...aliaekkaeleRlrvelesLqkve 109
                 l++e+++   e  k++e++ ++A g r  l+s +kq ++e+++ q   ++i++k++e e lr+el+sL+k  
  CCE29467.1  36 LCDEYMKRCIESEKQLETKHMEAEGLRSELQSLEKQLQQEKADSQdkvEQIEKKSTEAEGLRSELQSLKKQL 107
                 6778888888999**********************96666555542227899****************9964 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.026
       IFT20  75 kqreaeqqqlqaliaekkaeleRlrvelesLqkveq 110
                  q +a+ ++  ++i+ k++e e lr+el+sL+k  q
  CCE29467.1 108 HQEKADSRDKVEQIETKSTEAEGLRSELQSLRKRLQ 143
                 4667777778899******************98544 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2
       IFT20  42 vkelievleelakkvekeKlkAigarnllkseakqreaeqqqlqali...aekkaeleRlrvelesLqkv 108
                  ++l + l++l k++ +e  +A g r  l+s +kq ++e+++  +++   + k++e   lr+ l+sL+k 
  CCE29467.1 128 AEGLRSELQSLRKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVelfEMKSTEAKGLRSTLQSLRKQ 197
                 566777899999999****************999977766665554411157889999999999999986 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.62
       IFT20  38 fqklvkelievleelakkve...keKlkAigarnllkseakqreaeqqqlqaliaekkaeleRlrvelesLqkveqeq 112
                 +q+l k+l +   +  +kve    +  +A g r  l+s +kq+ +e+++ q ++a  ++++++l+   + L++v  +q
  CCE29467.1 156 LQSLKKQLQQEKADSREKVElfeMKSTEAKGLRSTLQSLRKQSLQEKADSQDKVAGLTTTIQQLDEDKKKLREVILTQ 233
                 5566666666666666666511134456889************************************99999886655 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   8.0    0.0066       4.9       9      74 ..      12      78 ..       8      81 .. 0.85
   2 ?   11.8  32.6   0.00025      0.19      10     140 .]      84     221 ..      78     221 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0066
  CENP-F_leu_zip  9 lekLKeserkadsLkdkvenLerelemse.enqekvileaEtskaevetlkeeieelaeelreleld 74
                    +++L ++erk d+L   ven+   l +   +   + + + Et+ +e+e+l++e++ l+++l++ ++d
      CCE29467.1 12 ESRLIRVERKLDNLSKGVENISLKLCDEYmKRCIESEKQLETKHMEAEGLRSELQSLEKQLQQEKAD 78
                    577889***************9998765414446788999*********************997665 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00025
  CENP-F_leu_zip  10 ekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkk....qervseLe 100
                     e+  +   +a+ L+   ++L+++l + +++  + + + Et+  e+e+l++e++ l+++l++ +++ + lrse ++L+k+lq++    +e+v+  e
      CCE29467.1  84 EQIEKKSTEAEGLRSELQSLKKQLHQEKADSRDKVEQIETKSTEAEGLRSELQSLRKRLQQESTEAKGLRSELQSLKKQLQQEkadsREKVELFE 178
                     6666777889999*******************************************************************997233257887555 PP

  CENP-F_leu_zip 101 slnss...lenlleekEqekvqmkeeskaaveeLqtqlkelne 140
                     +   +   l+++l+ + ++  q+k +s+ +v  L+t +++l+e
      CCE29467.1 179 MKSTEakgLRSTLQSLRKQSLQEKADSQDKVAGLTTTIQQLDE 221
                     5443322377889999999*********************987 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  38.8     7e-05     0.053     181     369 ..      37     229 ..       1     251 [. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7e-05
        HOOK 181 kdelaQrcheldkqlsllqeEknaLlaenkklqerlselengeesgtiqltskkylelqkqleqlqeelfrlEtarddyrlkceelekev.......le 272
                  de   rc e +kql +   E + L++e ++l+++l++    +++ +++ ++kk +e++    +lq    +l + + d r k+e++e++         e
  CCE29467.1  37 CDEYMKRCIESEKQLETKHMEAEGLRSELQSLEKQLQQEK-ADSQDKVEQIEKKSTEAEGLRSELQSLKKQLHQEKADSRDKVEQIETKSteaeglrSE 134
                 588899****************************998865.6777777777777776666666666666666666667666666666655111112257 PP

        HOOK 273 lqqrneeltslaeEaqaLkDEvDvLresadk.vkkleatvetykkkledlndLrrqvklleernaeYlqktveleeelkkanalrsqlelykkqvqel 369
                 lq+  + l++ + Ea+ L+ E+  L+++ ++  +   ++ve +  k  + + Lr ++++l  +++   q++++ ++ +   +++ +ql+  kk+++e+
  CCE29467.1 135 LQSLRKRLQQESTEAKGLRSELQSLKKQLQQeKADSREKVELFEMKSTEAKGLRSTLQSLRKQSL---QEKADSQDKVAGLTTTIQQLDEDKKKLREV 229
                 899999999****************98754313456678**********************9996...***************************997 PP

>> YvrJ  YvrJ protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00026       0.2      16      33 ..      15      32 ..      15      35 .. 0.88
   2 ?   -1.1   0.0       1.9   1.4e+03      23      35 ..     209     221 ..     207     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
        YvrJ 16 LvRiEkkLdeLtksIeeL 33
                L+R+E+kLd+L+k +e+ 
  CCE29467.1 15 LIRVERKLDNLSKGVENI 32
                9***********988776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.9
        YvrJ  23 LdeLtksIeeLse 35 
                    Lt++I++L e
  CCE29467.1 209 VAGLTTTIQQLDE 221
                 5679******986 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   6.3   0.00057      0.42      34      70 .]      49      85 ..      46      85 .. 0.95
   2 ?    8.5   5.9    0.0035       2.6      34      70 .]      84     120 ..      82     120 .. 0.94
   3 ?    8.2   2.8    0.0042       3.1      34      63 ..     119     148 ..     116     150 .. 0.90
   4 ?    6.0   6.6      0.02        15      32      69 ..     138     175 ..     137     176 .. 0.92
   5 ?    5.0   1.7     0.042        31      36      66 ..     177     207 ..     173     210 .. 0.84
   6 ?    0.9   1.1      0.77   5.7e+02      34      61 ..     201     227 ..     197     230 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00057
      Csm1_N 34 qkletkdqeiesLkeqlaeleekvkeleerrkkqeEe 70
                ++letk+ e e L+ +l++le+++++ + +++++ E+
  CCE29467.1 49 KQLETKHMEAEGLRSELQSLEKQLQQEKADSQDKVEQ 85
                79******************************99996 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0035
      Csm1_N  34 qkletkdqeiesLkeqlaeleekvkeleerrkkqeEe 70 
                 +++e+k++e e L+ +l++l++++++ + +++++ E+
  CCE29467.1  84 EQIEKKSTEAEGLRSELQSLKKQLHQEKADSRDKVEQ 120
                 799***************************9999986 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0042
      Csm1_N  34 qkletkdqeiesLkeqlaeleekvkeleer 63 
                 +++etk++e e L+ +l++l++++++  ++
  CCE29467.1 119 EQIETKSTEAEGLRSELQSLRKRLQQESTE 148
                 799*********************998765 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.02
      Csm1_N  32 LsqkletkdqeiesLkeqlaeleekvkeleerrkkqeE 69 
                 L+++l++ ++e + L+ +l++l++++++ + +++++ E
  CCE29467.1 138 LRKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVE 175
                 78999***********************9999988877 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.042
      Csm1_N  36 letkdqeiesLkeqlaeleekvkeleerrkk 66 
                  e k++e + L+ +l++l++++ + + ++++
  CCE29467.1 177 FEMKSTEAKGLRSTLQSLRKQSLQEKADSQD 207
                 6899****************99888777665 PP

  == domain 6  score: 0.9 bits;  conditional E-value: 0.77
      Csm1_N  34 qkletkdqeiesLkeqlaeleekvkele 61 
                 +k ++ ++++  L  ++++l+e+ k+l 
  CCE29467.1 201 EKADS-QDKVAGLTTTIQQLDEDKKKLR 227
                 44443.4578888888888888888765 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0003      0.22      14      82 ..     193     265 ..     186     280 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0003
          SE  14 klRkelsdnkvevtssfvGlvlknaelpkknk..ghvilgk..pspvllYqisstetRilveikskklPsian 82 
                  lRk+  ++k++ +++  Gl+ +  +l +++k   +vil++     +l Yqis  e+R  + +  + + s+ n
  CCE29467.1 193 SLRKQSLQEKADSQDKVAGLTTTIQQLDEDKKklREVILTQvnLGNTLRYQISDDEIRQRFVYMRQSIQSVVN 265
                 5899999999999*******9988888765552269****9545689**************999998888654 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  26.2    0.0097       7.3      44     141 ..      50     147 ..      44     148 .. 0.90
   2 ?    9.9  18.9    0.0011      0.83      38     131 ..     135     228 ..     133     253 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0097
  Jnk-SapK_ap_N  44 rneeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklher 139
                    + e ++ e+e lr el++Le+++++ek++++++ e++e++ ++ e+ r+elq+  +ql++e+     k+++++++ ++ e   +el++  ++l+++
     CCE29467.1  50 QLETKHMEAEGLRSELQSLEKQLQQEKADSQDKVEQIEKKSTEAEGLRSELQSLKKQLHQEKADSRDKVEQIETKSTEAEGLRSELQSLRKRLQQE 145
                    5678899**********************************************************9999999999999999999998888888876 PP

  Jnk-SapK_ap_N 140 et 141
                     t
     CCE29467.1 146 ST 147
                    65 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0011
  Jnk-SapK_ap_N  38 LeslasrneeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkk 131
                    L sl +r ++e++e++ lr el++L++++++ek++++++ e +e + ++ ++ r++lq+  +q  +e+   + k+  +++ +++l e +++l++
     CCE29467.1 135 LQSLRKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVELFEMKSTEAKGLRSTLQSLRKQSLQEKADSQDKVAGLTTTIQQLDEDKKKLRE 228
                    88999*****************************999999888888888888888888877776666666666888888888888777777654 PP

>> DUF2046  Uncharacterized conserved protein H4 (DUF2046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5  30.4       0.2   1.5e+02     122     276 ..      21     175 ..      10     186 .. 0.61
   2 ?    7.6   1.8    0.0027         2     229     293 ..     184     248 ..     178     251 .. 0.92
   3 ?   -2.5   0.1         3   2.3e+03     192     218 ..     487     513 ..     484     519 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.2
     DUF2046 122 ekveleqtlekeqevqvnklmrkiekleaevlakqtkleqlrrekvelentleqeq...ealvnrlWkrldkleaekrllqekldqpvsappsPrdlvs 217
                    +l + +e+      ++ m++  + e++ ++k+++ e lr e   le++l+qe+   +  v ++ k+    e+ +  lq+  +q + + +  rd v+
  CCE29467.1  21 KLDNLSKGVENISLKLCDEYMKRCIESEKQLETKHMEAEGLRSELQSLEKQLQQEKadsQDKVEQIEKKSTEAEGLRSELQSLKKQLHQEKADSRDKVE 119
                 44566666677777777889999999999999999999***999999**99999972223457777777666555555555444444444444555543 PP

     DUF2046 218 egdtaeklsahikalrkeverlrkqlkksqkeheekmaqfakeerqireenvrlqrklq 276
                 + +t+   s++ + lr+e+++lrk+l++  +e +   +++++  +q+++e +  + k++
  CCE29467.1 120 QIETK---STEAEGLRSELQSLRKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVE 175
                 33332...334555666666666666666666665555555555555555554444443 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0027
     DUF2046 229 ikalrkeverlrkqlkksqkeheekmaqfakeerqireenvrlqrklqleverrealsrhlsese 293
                  k lr+ +++lrkq  + ++++++k+a +++  +q+ e+  +l+  + ++v+  ++l  ++s+ e
  CCE29467.1 184 AKGLRSTLQSLRKQSLQEKADSQDKVAGLTTTIQQLDEDKKKLREVILTQVNLGNTLRYQISDDE 248
                 6789********************************************99999999999999876 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3
     DUF2046 192 eaekrllqekldqpvsappsPrdlvse 218
                 e    ++q kl+q+ s+ p  r lv++
  CCE29467.1 487 EPAHVVVQAKLSQKPSSIPKNRRLVRK 513
                 556667899999998888877777654 PP

>> Laminin_I  Laminin Domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  10.0    0.0024       1.8      21      99 ..      29     108 ..      17     108 .. 0.84
   2 ?    9.8   8.1   0.00078      0.58      15      75 ..      94     154 ..      90     156 .. 0.92
   3 ?    7.1  12.5    0.0054         4      15     140 ..     150     273 ..     146     284 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0024
   Laminin_I  21 ledltkeL.qeklskesakkskieilekelesLaqeteeLqkkatqvlakaqkvnaesertlnnakeLaekikkladnik 99 
                 +e+   +L  e+ +   + ++++e +  e e+L +e ++L k+++q  a+ q+  +++e+ + +a+ L  + + l+++++
  CCE29467.1  29 VENISLKLcDEYMKRCIESEKQLETKHMEAEGLRSELQSLEKQLQQEKADSQDKVEQIEKKSTEAEGLRSELQSLKKQLH 108
                 555555553466777778899************************************************99999998875 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00078
   Laminin_I  15 ykinanledltkeLqeklskesakkskieilekelesLaqeteeLqkkatqvlakaqkvna 75 
                 +++ ++l+ l+k+L +     + k ++ie +  e e+L +e ++L k+++q + +a+ ++ 
  CCE29467.1  94 EGLRSELQSLKKQLHQEKADSRDKVEQIETKSTEAEGLRSELQSLRKRLQQESTEAKGLRS 154
                 5788999**********************************************99988776 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0054
   Laminin_I  15 ykinanledltkeLqeklskesakkskieilekelesLaqeteeLqkkatqvlakaqkvnaesertlnnakeLaekikkladnikeilekvatlnenee 113
                 +++ ++l+ l+k+Lq+     ++k ++ e++  e ++L +  ++L k+  q  a+ q+  a   +t+++  e ++k ++++ +   + +   ++    +
  CCE29467.1 150 KGLRSELQSLKKQLQQEKADSREKVELFEMKSTEAKGLRSTLQSLRKQSLQEKADSQDKVAGLTTTIQQLDEDKKKLREVILTQVNLGNTL-RYQI-SD 246
                 678899****************************************************999999998765555555555443333333322.3333.33 PP

   Laminin_I 114 alpssklseelaeaqrlLeelrsRdft 140
                 +   + +  + + +q+  + l+ Rdf 
  CCE29467.1 247 DEIRQRFVYMRQSIQSVVNNLKTRDFI 273
                 334556667899999999999999985 PP

>> YwqJ-deaminase  YwqJ-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.0     0.012       8.7      51     110 ..      40     106 ..      34     113 .. 0.71
   2 ?    8.2   2.4    0.0036       2.7      57     113 ..      83     144 ..      75     151 .. 0.75
   3 ?    7.5   0.9     0.006       4.5      54     111 ..     137     198 ..     131     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.012
  YwqJ-deaminase  51 rLdeliv.eakrer.aaegaglhAEvaavsdaLydleae...ages....karkaldgarimvltvrlp 110
                     ++++ i  e++ e+   e+ gl +E +++ ++L +  a+   +       k++ +++g+r+++  ++ +
      CCE29467.1  40 YMKRCIEsEKQLETkHMEAEGLRSELQSLEKQLQQEKADsqdK--VeqieKKSTEAEGLRSELQSLKKQ 106
                     5555555544444444569***************887775543..146888899999999998887765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0036
  YwqJ-deaminase  57 veakreraaegaglhAEvaavsdaLydleae..ages.....karkaldgarimvltvrlpkkp 113
                     ve+  ++  e+ gl +E +++ ++L++  a+     +     +++ +++g+r+++  +r + ++
      CCE29467.1  83 VEQIEKKSTEAEGLRSELQSLKKQLHQEKADsrD--KveqieTKSTEAEGLRSELQSLRKRLQQ 144
                     44444455568***************88777441..355699999**********999987333 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.006
  YwqJ-deaminase  54 eliveakreraaegaglhAEvaavsdaLydleaeages.....karkaldgarimvltvrlpk 111
                      l   + +++  e+ gl +E +++ ++L +  a+ +e+      ++ +++g+r+++  +r ++
      CCE29467.1 137 SLR-KRLQQESTEAKGLRSELQSLKKQLQQEKADSREKvelfeMKSTEAKGLRSTLQSLRKQS 198
                     455.467777778****************8888866668899977999999999999999873 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  15.9    0.0054         4      57     124 ..      42     109 ..      33     110 .. 0.91
   2 ?   11.9  28.4   0.00024      0.18       8     113 ..      84     189 ..      80     197 .. 0.93
   3 ?    1.4   3.8      0.41     3e+02      62     102 ..     187     227 ..     180     233 .. 0.50

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0054
  TPR_MLP1_2  57 kelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneqNklLhd 124
                 k   +  ++l++   e++ l++e++s++++l+++++  + + e++ek+ +e+e  + +l++  k Lh+
  CCE29467.1  42 KRCIESEKQLETKHMEAEGLRSELQSLEKQLQQEKADSQDKVEQIEKKSTEAEGLRSELQSLKKQLHQ 109
                 5556778999*********************************************************8 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00024
  TPR_MLP1_2   8 eeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekels 106
                 e+i+++++e+e ++++lq+l+++l ++++  ++  ++ e+  ++ +    elq+lr++l++  +e++ l++e++s+k++l+++++   e+ e +e + +
  CCE29467.1  84 EQIEKKSTEAEGLRSELQSLKKQLHQEKADSRDKVEQIETKSTEAEGLRSELQSLRKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVELFEMKST 182
                 7899999***************************************************************************************99998 PP

  TPR_MLP1_2 107 elekrie 113
                 e++  + 
  CCE29467.1 183 EAKGLRS 189
                 8875554 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.41
  TPR_MLP1_2  62 lreelnelkaeiaelkaeaesakaeleeseesweeqkeele 102
                 lr+ l++l+++  + ka+ ++  a l +  ++++e k++l+
  CCE29467.1 187 LRSTLQSLRKQSLQEKADSQDKVAGLTTTIQQLDEDKKKLR 227
                 44445555555555555555555555555555544444444 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   9.8    0.0059       4.4       1      67 [.      56     122 ..      56     129 .. 0.86
   2 ?   10.2   7.7    0.0012       0.9       3      64 ..     114     175 ..     112     212 .. 0.84
   3 ?    3.8   1.0      0.12        88       3      52 ..     202     253 ..     179     294 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0059
                 X-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXX CS
        YabA   1 mdkkelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkels 67 
                 m+ + l ++l++le+ql++ +++ ++  e++++   e + L+ e ++l+++l++e++++++k ++++
  CCE29467.1  56 MEAEGLRSELQSLEKQLQQEKADSQDKVEQIEKKSTEAEGLRSELQSLKKQLHQEKADSRDKVEQIE 122
                 77888999********************************************777777666666554 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXX CS
        YabA   3 kkelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkk 64 
                  ++ ++++e+ +++ e l +el++l+++l++   e + L+ e ++l+++l++e+++++ek +
  CCE29467.1 114 SRDKVEQIETKSTEAEGLRSELQSLRKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVE 175
                 566677888888889999********************************766655555443 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHH CS
        YabA   3 kkelfdkleeleeqleelleeleelkeelaelleenaeLele..neklrerl 52 
                 k +  dk++ l++++++l e+ ++l+e + + ++  ++L+ +   +++r+r+
  CCE29467.1 202 KADSQDKVAGLTTTIQQLDEDKKKLREVILTQVNLGNTLRYQisDDEIRQRF 253
                 5666788899999999999999999999988888877776543377888887 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  25.7    0.0015       1.1     148     253 ..      41     145 ..      25     150 .. 0.88
   2 ?    7.2  18.3    0.0028       2.1     150     252 ..     130     232 ..     127     258 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0015
        Spc7 148 legleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksel 246
                 ++   e +++Le +  e++ l  el++ +++l++e ++ q+++e++e+ +++e e lr+el++lk+++++ k++  ++ eq+e+++++ e l+++ ++l
  CCE29467.1  41 MKRCIESEKQLETKHMEAEGLRSELQSLEKQLQQEKADSQDKVEQIEK-KSTEAEGLRSELQSLKKQLHQEKADSRDKVEQIETKSTEAEGLRSELQSL 138
                 55667889999999999999999***99999*9999999999999888.78999***************999999999999999999999999999999 PP

        Spc7 247 eeeiaea 253
                 +++++++
  CCE29467.1 139 RKRLQQE 145
                 9999876 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0028
        Spc7 150 gleedkelLekqeeeldellpeleeekaeleeeleklqe...aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkse 245
                 gl+++ + L k+ ++ ++  + l++e ++l+++l+++++   ++ el +++++e + lr++l++l ++     +e a+ q++++ l+++i++l+e k++
  CCE29467.1 130 GLRSELQSLRKRLQQESTEAKGLRSELQSLKKQLQQEKAdsrEKVELFEMKSTEAKGLRSTLQSLRKQSL---QEKADSQDKVAGLTTTIQQLDEDKKK 225
                 555555555555555555555555555555555555555433355677899999999******9999988...899999******************** PP

        Spc7 246 leeeiae 252
                 l+e i  
  CCE29467.1 226 LREVILT 232
                 9998865 PP

>> Mce4_CUP1  Cholesterol uptake porter CUP1 of Mce4, putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   5.0     0.019        15      50     159 ..      92     201 ..      65     250 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.019
   Mce4_CUP1  50 rlpqlredireladladvYadaapdlldaLdnavttsrTiveqqaeLdalllaavglsntgadllerngdnLirlaadlrptlelLakYspeltCllrn 148
                 + + lr+++++l++  +  ++ + d ++ ++  +t ++ + ++ ++L++ l++  + ++ +++ l++ +++L++  ad+r+ +el++  s e   l ++
  CCE29467.1  92 EAEGLRSELQSLKKQLHQEKADSRDKVEQIETKSTEAEGLRSELQSLRKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVELFEMKSTEAKGLRST 190
                 566789999999999999999999**************************************************************9888877666666 PP

   Mce4_CUP1 149 ladvepkvaka 159
                 l++++++  + 
  CCE29467.1 191 LQSLRKQSLQE 201
                 66665554444 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  18.7   0.00035      0.26     228     328 ..      21     114 ..       7     117 .. 0.87
   2 ?    1.0  22.4      0.31   2.3e+02     221     302 ..     109     196 ..     108     230 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00035
      HMMR_N 228 klleyieelsnvseql.ekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekckllekekeelvreeeekeqtlsaEleelkeklklke 325
                 kl +  + ++n+s +l + y ++  ++e  l++k  e e L+s+L+  e++l+++  d + k++++ek+           ++ l +El++lk++l++++
  CCE29467.1  21 KLDNLSKGVENISLKLcDEYMKRCIESEKQLETKHMEAEGLRSELQSLEKQLQQEKADSQDKVEQIEKKST--------EAEGLRSELQSLKKQLHQEK 111
                 5566667778888787789999999******************************************8776........5889***************9 PP

      HMMR_N 326 qea 328
                  + 
  CCE29467.1 112 ADS 114
                 875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.31
      HMMR_N 221 eekseteklleyieelsnvseqlekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekcklle.............kekeelvre 302
                 +ek++++  +e+ie  s ++e l   + ++++l+  l+++  e + L+s+L+  +++l+++  d  ek++l e             ++    +r+
  CCE29467.1 109 QEKADSRDKVEQIETKSTEAEGL---RSELQSLRKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVELFEmksteakglrstlQS----LRK 196
                 57777777777777777777777...999**********************999999999999999***9999755444444322211....111 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.9     0.012       8.9      37      75 ..      48      86 ..      35      88 .. 0.84
   2 ?    7.4   4.0    0.0082       6.1      38      70 ..      84     116 ..      80     123 .. 0.83
   3 ?    8.0   0.9     0.005       3.7      38      69 ..     119     150 ..     113     152 .. 0.86
   4 ?    7.4   7.1    0.0077       5.8      37      76 ..     139     178 ..     131     181 .. 0.82
   5 ?   -0.5   0.6       2.3   1.7e+03      44      72 ..     199     227 ..     184     231 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.012
  Fungal_TACC 37 qkkldklelenkslkqeieqLkkqleaerkEKqeLlkll 75
                 +k+l+  ++e ++l++e+++L+kql+ e+++ q+ ++ +
   CCE29467.1 48 EKQLETKHMEAEGLRSELQSLEKQLQQEKADSQDKVEQI 86
                 678889999999*****************9988777665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0082
  Fungal_TACC  38 kkldklelenkslkqeieqLkkqleaerkEKqe 70 
                  ++++k ++e ++l++e+++Lkkql+ e+++ ++
   CCE29467.1  84 EQIEKKSTEAEGLRSELQSLKKQLHQEKADSRD 116
                  57889999******************9987655 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.005
  Fungal_TACC  38 kkldklelenkslkqeieqLkkqleaerkEKq 69 
                  ++++  ++e ++l++e+++L+k+l+ e +E +
   CCE29467.1 119 EQIETKSTEAEGLRSELQSLRKRLQQESTEAK 150
                  4677778999*****************99966 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0077
  Fungal_TACC  37 qkkldklelenkslkqeieqLkkqleaerkEKqeLlklld 76 
                  +k+l++ ++e k+l++e+++Lkkql+ e+++ +e ++l++
   CCE29467.1 139 RKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVELFE 178
                  678999999*****************99876666655554 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 2.3
  Fungal_TACC  44 elenkslkqeieqLkkqleaerkEKqeLl 72 
                   +e+   ++ +  L+ +++   ++K++L 
   CCE29467.1 199 LQEKADSQDKVAGLTTTIQQLDEDKKKLR 227
                  34555566678888888888888888875 PP

>> IMPa_helical  Immunomodulating metalloprotease helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.6    0.0011       0.8       4      56 ..      22      74 ..      19      91 .. 0.84
   2 ?   -1.1   0.1       3.4   2.5e+03      48      48 ..     143     143 ..      97     185 .. 0.58
   3 ?   -1.9   0.0       5.9   4.4e+03      38      57 ..     207     226 ..     189     269 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0011
                  HHHHHHT-----GGG-EEETEE-TTSTTH.HHHHHHHHHHHHHHHHHHHTT-- CS
  IMPa_helical  4 ltrlesgsftvdlskCdsnvksCdeeaklkeefkkaaesirsalealdsskid 56
                  l +l++g  +++l  Cd+++k C e++k  e+ +  ae +rs+l++l+++ ++
    CCE29467.1 22 LDNLSKGVENISLKLCDEYMKRCIESEKQLETKHMEAEGLRSELQSLEKQLQQ 74
                  6788899999*************98887777788899**********998655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.4
                   H CS
  IMPa_helical  48 e 48 
                   +
    CCE29467.1 143 Q 143
                   2 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 5.9
                   HHHHHHHHHHHHHHHTT--G CS
  IMPa_helical  38 kaaesirsalealdsskidl 57 
                   ++++ +  ++++ld+ k++l
    CCE29467.1 207 DKVAGLTTTIQQLDEDKKKL 226
                   55556666666666666554 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  25.5    0.0012      0.91      28     152 ..      26     150 ..      18     158 .. 0.79
   2 ?    2.5  13.4      0.24   1.8e+02      11      81 ..     155     225 ..     147     271 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0012
        Fez1  28 qklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaq.rq 125
                 +k+ e ++lk  + e  ++  e+e+++++ + ++e    el+ +e++lq++k++++ + e++ek ++e ++lr+el++l+++ ++++++s+++ +q ++
  CCE29467.1  26 SKGVENISLKL-CDEYMKRCIESEKQLETKHMEAEGLRSELQSLEKQLQQEKADSQDKVEQIEKKSTEAEGLRSELQSLKKQLHQEKADSRDKVEQiET 123
                 56666777764.56667777788888888888889999999999999999999999999999***************9998877777666664444244 PP

        Fez1 126 eaeeleelkreverlraeLkeerqkke 152
                 +++e+e l++e++ lr++L++e  + +
  CCE29467.1 124 KSTEAEGLRSELQSLRKRLQQESTEAK 150
                 577889999999999999999987765 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.24
        Fez1  11 EislLKqQLkdsqaevtqklseivalka.qlrelrakleekeeeikeleesleektlelevcenelqrkkse 81 
                 E+  LK+QL++ +a+  +k+ e++++k+ + + lr++l++  ++  + ++ +++k + l +  ++l++ k++
  CCE29467.1 155 ELQSLKKQLQQEKADSREKV-ELFEMKStEAKGLRSTLQSLRKQSLQEKADSQDKVAGLTTTIQQLDEDKKK 225
                 66677777777777777775.666666425777777777777777777777777777766666666555332 PP

>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   7.0      0.39   2.9e+02      99     137 ..      57      95 ..      36     123 .. 0.51
   2 ?   12.2   4.2   0.00016      0.12      95     147 ..     121     175 ..     115     185 .. 0.87
   3 ?    3.2   3.8     0.094        71      96     144 ..     180     228 ..     171     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.39
  Bacillus_HBL  99 dkaellellekLqeeiqqnqkevkqlikeLkklklklak 137
                   + ++l + l+ L++++qq ++ +++++++++k  ++ + 
    CCE29467.1  57 EAEGLRSELQSLEKQLQQEKADSQDKVEQIEKKSTEAEG 95 
                   445555555555555555555555555555543333332 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00016
  Bacillus_HBL  95 v..dkkdkaellellekLqeeiqqnqkevkqlikeLkklklklakdsknFktdvd 147
                   +  + ++ ++l + l+ L++ +qq + e+k l  eL++lk++l++++++  ++v+
    CCE29467.1 121 IetKSTEAEGLRSELQSLRKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVE 175
                   4446678899***********************************9999887776 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.094
  Bacillus_HBL  96 dkkdkaellellekLqeeiqqnqkevkqlikeLkklklklakdsknFkt 144
                   + ++ ++l + l+ L+++  q ++ ++++++ L+   ++l++d+k++ +
    CCE29467.1 180 KSTEAKGLRSTLQSLRKQSLQEKADSQDKVAGLTTTIQQLDEDKKKLRE 228
                   5567789999*********************************998865 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   9.9     0.017        13      29      84 ..      47     102 ..      39     104 .. 0.93
   2 ?   10.3  15.5    0.0011       0.8      20      88 ..     101     169 ..      97     172 .. 0.95
   3 ?    2.3   4.1      0.34   2.6e+02      33      84 ..     177     225 ..     170     235 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  29 aqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqd 84 
                 ++++l+ ++++a    + +++L++ L++eka sq++ +++++   e + L  +Lq 
  CCE29467.1  47 SEKQLETKHMEAEGLRSELQSLEKQLQQEKADSQDKVEQIEKKSTEAEGLRSELQS 102
                 7789999999********************************************97 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  20 rlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaeae 88 
                 + L++qL q +   r++  q+ t +   + L++ L+  + + q++ ++++ l+ e+++L+++Lq+ +a+
  CCE29467.1 101 QSLKKQLHQEKADSRDKVEQIETKSTEAEGLRSELQSLRKRLQQESTEAKGLRSELQSLKKQLQQEKAD 169
                 679**************************************************************9986 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  33 lreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqd 84 
                 ++ + ++a    +t+++L++   +eka sq++   v  l   i++L++  ++
  CCE29467.1 177 FEMKSTEAKGLRSTLQSLRKQSLQEKADSQDK---VAGLTTTIQQLDEDKKK 225
                 56677889999999999999888889988887...55555555555544333 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  44.5     0.061        46      51     231 ..      39     228 ..      20     240 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.061
    CALCOCO1  51 eaanrqrekekeeykrdreeldrerkelesrveelkeelkesrekveeleekqkelerlseelaeeksalleakeesearirELE..........eDik 139
                 e  +r  e e ++ ++++ e +  r+el+s  ++l++e + s++kve++e+k  e+e l+ el+  k++l ++k++s+ ++  +E           + +
  CCE29467.1  39 EYMKRCIESE-KQLETKHMEAEGLRSELQSLEKQLQQEKADSQDKVEQIEKKSTEAEGLRSELQSLKKQLHQEKADSRDKVEQIEtksteaeglrSELQ 136
                 5666777777.4567777888888889988888899999999999999999999999999999999999999999988888776622222212224678 PP

    CALCOCO1 140 tltqralekEteLeRlkerakkalaqrkeeeaerkqlqakleqseeelrslskelqelrnslaerdtqvlqLqdtittltqkLttAqrkeae 231
                 +l +r ++  te + l+ + + + +q+++e+a+ ++    +e   +e + l + lq+lr +  + +++ +     +tt+ q+L++ ++k  e
  CCE29467.1 137 SLRKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVELFEMKSTEAKGLRSTLQSLRKQSLQEKADSQDKVAGLTTTIQQLDEDKKKLRE 228
                 88888888888888888888899999999988888877788899999999*******99998888888888788888888888888887655 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.38   2.8e+02      14      34 ..      13      33 ..       9      38 .. 0.74
   2 ?    4.1   1.1     0.083        62       5      31 ..      47      73 ..      43      78 .. 0.87
   3 ?    5.8   1.3     0.024        18       8      32 ..      85     109 ..      80     122 .. 0.87
   4 ?    3.9   0.2     0.095        71       8      31 ..     120     143 ..     115     144 .. 0.78
   5 ?    6.6   1.3     0.014        10       4      46 ..     137     179 ..     135     184 .. 0.86
   6 ?   -0.6   0.1       2.5   1.9e+03      19      29 ..     187     197 ..     175     231 .. 0.59

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.38
   FlaC_arch 14 teletvkkeneelsksveelk 34
                ++l  v++++++lsk ve++ 
  CCE29467.1 13 SRLIRVERKLDNLSKGVENIS 33
                566678888888888888774 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.083
   FlaC_arch  5 lEnklsklsteletvkkeneelsksve 31
                 E++l+   +e e +++e+++l+k+++
  CCE29467.1 47 SEKQLETKHMEAEGLRSELQSLEKQLQ 73
                589999999999********9999987 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.024
   FlaC_arch   8 klsklsteletvkkeneelsksvee 32 
                 +++k ste e +++e+++l+k++++
  CCE29467.1  85 QIEKKSTEAEGLRSELQSLKKQLHQ 109
                 5889999*************99875 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.095
   FlaC_arch   8 klsklsteletvkkeneelsksve 31 
                 +++  ste e +++e+++l+k ++
  CCE29467.1 120 QIETKSTEAEGLRSELQSLRKRLQ 143
                 356667799999999999999876 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.014
   FlaC_arch   4 elEnklsklsteletvkkeneelsksveelkenVkdllsLYEv 46 
                 +l ++l++ ste + +++e+++l+k++++ k + ++ ++L+E+
  CCE29467.1 137 SLRKRLQQESTEAKGLRSELQSLKKQLQQEKADSREKVELFEM 179
                 67789999*******************9988888888888877 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 2.5
   FlaC_arch  19 vkkeneelsks 29 
                 +++++++l+k+
  CCE29467.1 187 LRSTLQSLRKQ 197
                 55555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2858  (0.159407); expected 358.6 (0.02)
Passed bias filter:                      724  (0.0403815); expected 358.6 (0.02)
Passed Vit filter:                       210  (0.0117129); expected 17.9 (0.001)
Passed Fwd filter:                        94  (0.0052429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 1.60u 0.37s 00:00:01.97 Elapsed: 00:00:00.55
# Mc/sec: 2860.80
//
Query:       CCE29468.1  [L=109]
Description: uncharacterized protein CPUR_03161 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   13.7   0.0      0.045   13.3   0.0    1.2  1  YvrJ      YvrJ protein family


Domain annotation for each model (and alignments):
>> YvrJ  YvrJ protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.5e-06     0.045      17      32 ..      56      71 ..      56      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.5e-06
        YvrJ 17 vRiEkkLdeLtksIee 32
                +RiE+kLd+Ltk + +
  CCE29468.1 56 TRIEGKLDDLTKGVAD 71
                7**********97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 823.67
//
Query:       CCE29469.1  [L=351]
Description: uncharacterized protein CPUR_03162 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0013   18.2   0.0       0.04   13.5   0.0    2.7  2  YvrJ             YvrJ protein family
     0.0015   18.8  44.6       0.49   10.8   7.8    4.8  5  Csm1_N           Csm1 N-terminal domain
     0.0019   17.2  21.8     0.0028   16.7  21.8    1.2  1  IFT57            Intra-flagellar transport protein 57
     0.0023   18.5  25.6     0.0023   18.5  25.6    2.4  2  APG6_N           Apg6 coiled-coil region
     0.0025   16.1  37.7     0.0071   14.6  37.7    1.7  1  HOOK             HOOK protein
     0.0065   16.7   8.0     0.0065   16.7   8.0    3.8  4  DUF4164          Domain of unknown function (DUF4164)
     0.0069   15.5  38.8       0.92    8.5  38.8    2.2  1  Atg14            Vacuolar sorting 38 and autophagy-related su
     0.0091   13.6  30.1      0.012   13.2  30.1    1.1  1  DUF3584          Protein of unknown function (DUF3584)
  ------ inclusion threshold ------
      0.021   13.7  30.9      0.034   13.0  30.9    1.3  1  CALCOCO1         Calcium binding and coiled-coil domain (CALC
      0.024   14.7  34.5       0.53   10.4   2.7    4.5  4  Cep57_CLD_2      Centrosome localisation domain of PPC89
      0.074   11.6  24.6      0.088   11.3  24.6    1.1  1  Macoilin         Macoilin family
      0.091   12.3  26.8       0.78    9.3   8.3    3.2  3  Fzo_mitofusin    fzo-like conserved region
        0.2   11.0  37.2       0.02   14.3  17.8    2.7  3  Tropomyosin      Tropomyosin
        0.4   10.1  38.5        1.7    8.0  30.5    2.1  2  Golgin_A5        Golgin subfamily A member 5
        0.6   10.5  36.7        1.7    9.1  36.6    1.8  1  Fez1             Fez1
       0.69    8.7  40.5       0.65    8.8  26.1    1.9  2  Spc7             Spc7 kinetochore protein
        1.1    8.7  41.8         27    4.1  40.1    2.2  2  HMMR_N           Hyaluronan mediated motility receptor N-term
        1.2    8.7  34.4          1    8.9   6.6    3.3  3  DUF4795          Domain of unknown function (DUF4795)
        1.5    8.6  29.3        5.6    6.7  10.9    2.4  2  Lectin_N         Hepatic lectin, N-terminal domain
        1.7    8.3  35.0        2.3    7.9  14.8    2.2  2  Laminin_I        Laminin Domain I
        1.9    8.3  38.6      0.089   12.6  16.8    2.7  3  Phage_GP20       Phage minor structural protein GP20
        2.2    6.1  20.1          3    5.6  20.1    1.1  1  V_ATPase_I       V-type ATPase 116kDa subunit family
        2.3    8.4  35.0        0.3   11.3  12.0    2.9  2  IFT20            Intraflagellar transport complex B, subunit 
        2.4    8.7   7.5        4.1    7.9   7.5    1.4  1  SOBP             Sine oculis-binding protein
        2.5    8.2  26.7        1.4    9.0   7.5    2.2  2  GldM_N           GldM N-terminal domain
        2.7    8.5  36.3         12    6.4   2.9    4.4  4  Fungal_TACC      Fungal Transforming acidic coiled-coil (TACC
        2.7    7.9  29.6        7.7    6.4  28.8    2.1  2  Alpha-2-MRAP_C   Alpha-2-macroglobulin RAP, C-terminal domain
        2.8    7.4  32.9         25    4.3  32.9    2.7  1  Filament         Intermediate filament protein
        3.6    6.8  29.9        7.7    5.8  29.8    1.5  1  DUF4407          Domain of unknown function (DUF4407)
        5.5    6.9   7.9        5.5    6.9   4.7    2.3  2  Cas_APE2256      CRISPR-associated protein (Cas_APE2256)
        6.3    7.1  36.4        2.4    8.4  16.2    2.9  3  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
        6.6    6.9  43.3        6.2    7.0  20.0    2.3  2  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
        9.8    6.9  40.0         16    6.2   4.4    4.8  4  DUF4404          Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> YvrJ  YvrJ protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   7.3e-05      0.04      17      33 ..      41      57 ..      41      59 .. 0.91
   2 ?    1.4   0.0      0.43   2.4e+02      22      35 ..     211     224 ..     210     225 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.3e-05
        YvrJ 17 vRiEkkLdeLtksIeeL 33
                +RiE+kLd+Ltk + +L
  CCE29469.1 41 TRIEGKLDNLTKGVADL 57
                7***********99988 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.43
        YvrJ  22 kLdeLtksIeeLse 35 
                 k   Ltk+I++L e
  CCE29469.1 211 KVAVLTKTIQRLDE 224
                 6778*******986 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.1     0.031        17      34      67 ..      74     107 ..      70     108 .. 0.86
   2 !    9.6   9.5    0.0022       1.2      33      70 .]     108     145 ..     105     145 .. 0.94
   3 !   10.6   6.6   0.00099      0.54      29      70 .]     139     180 ..     138     180 .. 0.94
   4 !   10.8   7.8    0.0009      0.49      34      66 ..     179     211 ..     175     214 .. 0.91
   5 ?    0.9   0.4       1.1   5.8e+02      37      59 ..     206     228 ..     202     230 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.031
      Csm1_N  34 qkletkdqeiesLkeqlaeleekvkeleerrkkq 67 
                 ++l tk+   e L+ +l++l++++++++ +++k+
  CCE29469.1  74 KQLVTKSLDAEGLRSELESLKKQLQQQDAKSQKK 107
                 6888999999999999999999999999988875 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0022
      Csm1_N  33 sqkletkdqeiesLkeqlaeleekvkeleerrkkqeEe 70 
                  ++l+tk++e + L+ +l++l++++++++++++k+ E+
  CCE29469.1 108 VKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQKKVEQ 145
                 579********************************996 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00099
      Csm1_N  29 NsvLsqkletkdqeiesLkeqlaeleekvkeleerrkkqeEe 70 
                 N+ + ++letk++e + L  +l++l++++++ +  ++++ E+
  CCE29469.1 139 NQKKVEQLETKSTEAKGLGSELQSLKKQLQQEKAYSQDKVEQ 180
                 88999****************************999999986 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.0009
      Csm1_N  34 qkletkdqeiesLkeqlaeleekvkeleerrkk 66 
                 ++letk++e ++L+ +l++l+e++++  ++++k
  CCE29469.1 179 EQLETKSTEAKNLRSELQSLKEQLQQKADSQEK 211
                 89***********************99998876 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 1.1
      Csm1_N  37 etkdqeiesLkeqlaeleekvke 59 
                    ++++  L ++++ l+e+ ++
  CCE29469.1 206 ADSQEKVAVLTKTIQRLDEDKRK 228
                 34567889999999999888765 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7  21.8   5.2e-06    0.0028     186     347 ..      72     225 ..       8     230 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.2e-06
       IFT57 186 keeeiieskvdaaeWklEleRvlpqLkvtikadakdWrahleqmkkhkksieeslpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqe 284
                  e++++ ++ da+  + Ele   +qL+ + ++++k   ++l++ ++  k+++++l+++k++l++ ++d +k +e++e++     ++ + l +e++++++
  CCE29469.1  72 FEKQLVTKSLDAEGLRSELESLKKQLQQQDAKSQKK-VKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQKKVEQLETKS----TEAKGLGSELQSLKK 165
                 567889999******************966444332.4556666677789**************************9996....577888888899999 PP

       IFT57 285 elsevkekykqlsegvseltrelaeiseelekvkqemeergssmtDgsplvkikkaltklkkE 347
                 +l++ k   ++  e+++ +++e +++  el+++k++++++ +s    + +  ++k++++l ++
  CCE29469.1 166 QLQQEKAYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQKADSQ---EKVAVLTKTIQRLDED 225
                 99999999999999999999999999999999999999986654...4455566667776666 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5  25.6   4.2e-06    0.0023      28     130 ..      69     171 ..      56     174 .. 0.94
   2 ?    4.2  16.6      0.11        59      45     100 ..     156     211 ..     148     233 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.2e-06
      APG6_N  28 YeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqy 126
                   ef+k+l +++ ++e  ++ele+l+++l++ +++ ++++++Lk   +e + l++el++l++ele+ + ++++++++   +++e + l  el+sl+ q+
  CCE29469.1  69 CVEFEKQLVTKSLDAEGLRSELESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQKKVEQLETKSTEAKGLGSELQSLKKQL 167
                 57899***999988888********************************************************************************** PP

      APG6_N 127 ehaq 130
                 ++ +
  CCE29469.1 168 QQEK 171
                 9875 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.11
      APG6_N  45 qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeer 100
                   +el++l+++l++ ++  ++++e+L+   +e ++l++el++l+e+l+++ + +e+
  CCE29469.1 156 LGSELQSLKKQLQQEKAYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQKADSQEK 211
                 45789999999999999999999999999999999999999999999998877665 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6  37.7   1.3e-05    0.0071     179     332 ..      60     216 ..      29     262 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
        HOOK 179 eekdelaQrcheldkqlsllqeEknaLlaenkklqerlselengeesgtiqltskkylelqkqleqlqeelfrlEtarddyrlkceelekevlelqqrn 277
                 +  de+  rc e +kql +   + + L++e ++l+++l++ +  +++++++  ++k +e++    +lq     lE+++ d + k+e+le++ +e +   
  CCE29469.1  60 KVSDEFMKRCVEFEKQLVTKSLDAEGLRSELESLKKQLQQQD-AKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQKKVEQLETKSTEAKGLG 157
                 45799***********************************99.5555566555666665555555555555568********************99999 PP

        HOOK 278 eeltsl....aeEaqaLkDEvDvLresadkvkkleatvetykkkledlndLrrqvklle 332
                  el+sl     +E +  +D v  L  ++  +k+l ++++++k +l++ +d + +v  l 
  CCE29469.1 158 SELQSLkkqlQQEKAYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQKADSQEKVAVLT 216
                 99987611114566667799999999999999999999999999999888887776654 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.87   4.7e+02       7      24 ..      37      54 ..      32      56 .. 0.80
   2 ?    1.1  10.2      0.91     5e+02       6      73 ..      86     154 ..      81     169 .. 0.86
   3 ?    3.0   5.9      0.24   1.3e+02       5      73 ..     120     189 ..     116     190 .. 0.71
   4 !   16.7   8.0   1.2e-05    0.0065      10      86 ..     188     261 ..     179     263 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.87
     DUF4164  7 eaaltrLeaaldsLEkav 24
                e+ +tr+e++ld+L+k v
  CCE29469.1 37 ENPQTRIEGKLDNLTKGV 54
                66789*********9866 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.91
     DUF4164   6 leaaltrLeaaldsLEkavdrrleaerkrdeleaei.ealgedrsRLaeeLdqaearaarleevnrEvs 73 
                 l++ l+ L++ l++ ++ +++++++ ++++  ++ + ++l++ ++ L+++ ++ + + ++le  + E++
  CCE29469.1  86 LRSELESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLrSELQSLKKELEQQKTDNQKKVEQLETKSTEAK 154
                 667789999******************99999999989************************9999976 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.24
     DUF4164   5 eleaaltrLeaaldsLEkavdrrleaerkrdeleaei.ealgedrsRLaeeLdqaearaarleevnrEvs 73 
                  l++ l+ L++ l++  +  ++++e+ ++++  ++ + ++l++ +++L +e   ++++ ++le  + E++
  CCE29469.1 120 GLRSELQSLKKELEQQKTDNQKKVEQLETKSTEAKGLgSELQSLKKQLQQEKAYSQDKVEQLETKSTEAK 189
                 4555566666666666666666777777777777777788999999999999999999999998888765 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 1.2e-05
     DUF4164  10 ltrLeaaldsLEkavdrrleaerkrdeleaeiealgedrsRLaeeLdqaearaarleevnrEvsrrLkaaietirav 86 
                 +++L+  l+sL + ++++ ++++k + l ++i++l+ed+ +L   + +   r +      +E+ +r +   e+i++v
  CCE29469.1 188 AKNLRSELQSLKEQLQQKADSQEKVAVLTKTIQRLDEDKRKLRGVIPGNALRHK---VSDDEIRQRFVNIREKIQEV 261
                 789***************************************998888877764...45688888888888888887 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5  38.8    0.0017      0.92      22     162 ..      74     254 ..      34     258 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0017
       Atg14  22 erlyelrerlaklksekeslkkkiekalegke.........................eaeqledkiknkkakleelksliadlrerlqelkdklsqlkk 95 
                 ++l ++  +   l+se eslkk++++  ++ +                         e eq++++ ++k ++le++ ++   l ++lq lk++l+q k+
  CCE29469.1  74 KQLVTKSLDAEGLRSELESLKKQLQQQDAKSQkkvkqlktksteakglrselqslkkELEQQKTDNQKKVEQLETKSTEAKGLGSELQSLKKQLQQEKA 172
                 56666666666666666666666666555555566666677776666666666666677777777778888888888888888888************* PP

       Atg14  96 eieekkkklaklsdklkkRrsdleslqneleerrkkq..iaklqdaikrieqk.............lsslssktlesrsslc 162
                   ++k ++l+++s + k  rs+l+sl+++l+++  +q  +a l+++i+r ++               +++s++ + +r + +
  CCE29469.1 173 YSQDKVEQLETKSTEAKNLRSELQSLKEQLQQKADSQekVAVLTKTIQRLDEDkrklrgvipgnalRHKVSDDEIRQRFVNI 254
                 ******************************9987655337889999996555533333444433336666666666666555 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2  30.1   2.2e-05     0.012     602     795 ..      63     260 ..      54     267 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
     DUF3584 602 eeLrerlqaleealqsaeakqkqaeeelkqlnaeleeakravaeaatalknardtlerlqnekesekdklekaiaerkqqaeeqlqkldaqlkqleeqq 700
                 +e  +r   +e++l +++  ++ + +el++l+++l++++++ +++ ++lk +  + + l++e +s+k++le++ ++++ ++ eql++   ++k l  + 
  CCE29469.1  63 DEFMKRCVEFEKQLVTKSLDAEGLRSELESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQ-KKVEQLETKSTEAKGLGSEL 160
                 5667788899*************************************************************9987765.567899999*********** PP

     DUF3584 701 kaaleelked..lseerlekkakwqevvgeldeqlaelkkaieaartqakar...lkeleeaykreLkskdvDpetvkelkrkieeLekkieriekrre 794
                 ++++++l+++  +s+ ++e+ +    +  +l  +l++lk++++++  ++++    +k++++  +++ k ++v p +  + k    e+ ++  +i+++ +
  CCE29469.1 161 QSLKKQLQQEkaYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQKADSQEKVavlTKTIQRLDEDKRKLRGVIPGNALRHKVSDDEIRQRFVNIREKIQ 259
                 ***999876533789999999999999999999999999999888766554312256666666666666676666665555555566666666666655 PP

     DUF3584 795 e 795
                 e
  CCE29469.1 260 E 260
                 5 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0  30.9   6.3e-05     0.034      51     228 ..      64     228 ..      41     259 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.3e-05
    CALCOCO1  51 eaanrqrekekeeykrdreeldrerkelesrveelkeelkesrekveeleekqkelerlseelaeeksalleakeesearirELEeDiktltqralekE 149
                 e  +r +e ek+   +++ + +  r+eles  ++l+++ ++s++kv++l++k  e++ l+ el+  k+ l ++k ++++++  LE    +   + l   
  CCE29469.1  64 EFMKRCVEFEKQ-LVTKSLDAEGLRSELESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQKKVEQLETK--STEAKGL--G 157
                 566777777754.44567778999999999999999999999*****************************************9953..3333444..3 PP

    CALCOCO1 150 teLeRlkerakkalaqrkeeeaerkqlqakleqseeelrslskelqelrnslaerdtqvlqLqdtittltqkLttAqrk 228
                  eL+ lk++       +++e+a  ++   +le+  +e ++l +elq+l+++l++++ +  +    +t++ q+L++ +rk
  CCE29469.1 158 SELQSLKKQ-------LQQEKAYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQKADSQEK-VAVLTKTIQRLDEDKRK 228
                 455555543.......333333333334457777888999999999999988887654332.23344444455554444 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.7   0.00098      0.53      36      66 ..      72     102 ..      71     103 .. 0.92
   2 ?    9.8   3.2    0.0015      0.83      37      65 ..     108     136 ..     106     139 .. 0.93
   3 ?    5.0   2.2     0.049        27      34      65 ..     140     171 ..     136     173 .. 0.87
   4 ?    6.9   3.7     0.012       6.5      37      64 ..     178     205 ..     176     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00098
  Cep57_CLD_2  36 alrqLgvAyeelneLkaevealrkELkeqra 66 
                  +++qL  + ++++ L++e+e+l+k+L+ q a
   CCE29469.1  72 FEKQLVTKSLDAEGLRSELESLKKQLQQQDA 102
                  789************************9865 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0015
  Cep57_CLD_2  37 lrqLgvAyeelneLkaevealrkELkeqr 65 
                  ++qL  +  e+  L++e+ +l+kEL+ q+
   CCE29469.1 108 VKQLKTKSTEAKGLRSELQSLKKELEQQK 136
                  79***********************9987 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.049
  Cep57_CLD_2  34 dsalrqLgvAyeelneLkaevealrkELkeqr 65 
                     + qL  +  e+  L +e+ +l+k+L+ ++
   CCE29469.1 140 QKKVEQLETKSTEAKGLGSELQSLKKQLQQEK 171
                  56689***********************9865 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.012
  Cep57_CLD_2  37 lrqLgvAyeelneLkaevealrkELkeq 64 
                  + qL  +  e+ +L++e+ +l+++L+ +
   CCE29469.1 178 VEQLETKSTEAKNLRSELQSLKEQLQQK 205
                  679**********************987 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  24.6   0.00016     0.088     392     555 ..      77     256 ..      19     286 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00016
    Macoilin 392 lskkdalvrLeadikkLkaeLqasrqteqelrskissltseerslkselqqlkkendllqt....klhelvsakqkdk...qtlqqlekrLkeekeara 483
                 ++k  + + L ++++ Lk +Lq++  + q+  +++++ ++e + l+selq+lkke ++ +t    k+++l  +  + k    +lq+l k+L++ek   +
  CCE29469.1  77 VTKSLDAEGLRSELESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTdnqkKVEQLETKSTEAKglgSELQSLKKQLQQEKAYSQ 175
                 3444456689999**********99999999999********************99987551111444443333333333347899********99887 PP

    Macoilin 484 slekqLae...ekkrkkeeeetaaravalaaasrsecteslkskkreleaeikkLekel.......klkeeqirelelkvqe 555
                    +qL+    e k+ ++ e ++ + + + +a  +e+  +l + ++ l+ + +kL+  +       k+ +++ir+  ++++e
  CCE29469.1 176 DKVEQLETkstEAKNLRS-ELQSLKEQLQQKADSQEKVAVLTKTIQRLDEDKRKLRGVIpgnalrhKVSDDEIRQRFVNIRE 256
                 777777651113333344.445555577788888999******************999999999999999999875544433 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   8.3    0.0014      0.78     104     156 ..      84     136 ..      67     140 .. 0.89
   2 ?    8.4   9.1    0.0026       1.4     101     154 ..     151     204 ..     135     209 .. 0.85
   3 ?    0.4   0.1      0.79   4.3e+02     115     139 ..     206     230 ..     203     253 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0014
  Fzo_mitofusin 104 arlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekfe 156
                    + l+++ +  +k+l+++ ++ +k++++l++ +++ak lr + ++l++eLe+ +
     CCE29469.1  84 EGLRSELESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQK 136
                    6799999******************************************9865 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0026
  Fzo_mitofusin 101 stfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLek 154
                    +  + l ++ +  +k+l++e +  + ++e+le+ +++ak lr + ++l+++L++
     CCE29469.1 151 TEAKGLGSELQSLKKQLQQEKAYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQ 204
                    345679999999****************************************97 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.79
  Fzo_mitofusin 115 keleeeikelekeiekleevqkkak 139
                    ++ +e+++ l+k+i++l+e ++k++
     CCE29469.1 206 ADSQEKVAVLTKTIQRLDEDKRKLR 230
                    5667889999999999999888765 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3  17.8   3.7e-05      0.02      11     109 ..      63     158 ..      60     162 .. 0.90
   2 ?    3.9  35.0     0.053        29       9     131 ..      89     221 ..      88     229 .. 0.79
   3 ?    0.8  12.4      0.49   2.7e+02       4      69 ..     161     225 ..     158     250 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.7e-05
  Tropomyosin  11 deaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaadeserarKvlEnrelkdeekleeleaqlkeakeia 108
                  de+  r+ +++k+l  +   ae   +E ++l++++q+++++    ++++++ ++k +ea+   +e + + K lE+++  +  k+e+le++ +eak + 
   CCE29469.1  63 DEFMKRCVEFEKQLVTKSLDAEGLRSELESLKKQLQQQDAKS---QKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQKKVEQLETKSTEAKGLG 157
                  88999*******************************999865...556666666999*************************************9876 PP

  Tropomyosin 109 e 109
                   
   CCE29469.1 158 S 158
                  5 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.053
  Tropomyosin   9 eldeaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaad....eserarKvlEnrelkdeekleeleaqlk 102
                  el++ + +l++  +k +++ k+ +   +E+  l+  +q l +ele+ +++ +++ e+Le  + +a+    e + + K l + ++ + +k+e+le++ +
   CCE29469.1  89 ELESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQKKVEQLETKSTEAKglgsELQSLKKQLQQEKAYSQDKVEQLETKST 186
                  789999999999999999999********************************9999999988886333266999*********************** PP

  Tropomyosin 103 eakeiaeead......rkyeEvarklvvvesdLer 131
                  eak++  e +      ++ +  ++k++v+++ ++r
   CCE29469.1 187 EAKNLRSELQslkeqlQQKADSQEKVAVLTKTIQR 221
                  ***99877651111113444455555555555555 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.49
  Tropomyosin   4 kqveeeldeaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeea 69 
                  ++++++l++ +   ++  ++le +  +a++  +E  +l+ ++q+  +  e++   l+++ ++L+e 
   CCE29469.1 161 QSLKKQLQQEKAYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQKADSQEKVA-VLTKTIQRLDED 225
                  44555555555555555555555555555555555555555555544444443.344445555443 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  16.0    0.0062       3.4      70     146 ..      83     148 ..      51     155 .. 0.50
   2 ?    8.0  30.5    0.0032       1.7      26     177 ..     107     256 ..     105     260 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0062
   Golgin_A5  70 ieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrek 146
                  e lr           +e esl++qlq+ + + +++ k+ ++ ++e + l+ el++l++el ++k+++q+++++ e+
  CCE29469.1  83 AEGLR-----------SELESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQKKVEQLET 148
                 33333...........3444444444444444444444444444444444444444444444444444444444443 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0032
   Golgin_A5  26 liasLkegsge.eglessta.lsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkee 122
                  +++Lk +s+e +gl+s+ + l++el++ k +++   e+l+  +++ + l +elq l++q q+e   +++++++le++ +e     +++++el++lke+
  CCE29469.1 107 KVKQLKTKSTEaKGLRSELQsLKKELEQQKTDNQKKVEQLETKSTEAKGLGSELQSLKKQLQQEKAYSQDKVEQLETKSTEA----KNLRSELQSLKEQ 201
                 4678888775414555543337788888888888888999999999999999999999999999999999999888877644....4456699999999 PP

   Golgin_A5 123 lryleeelvrskatlqsrikdrekeieklrnqlttk.slsssseselesRlkqLte 177
                 l+   +  +++ a l + i++ +++  klr  +  +   ++ s++e+ +R  ++ e
  CCE29469.1 202 LQQKAD-SQEKVAVLTKTIQRLDEDKRKLRGVIPGNaLRHKVSDDEIRQRFVNIRE 256
                 987554.5556677888899999999999999887724455688888888766655 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  36.6     0.003       1.7      26     154 ..      76     212 ..      67     230 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.003
        Fez1  26 vtqklseivalkaqlrelrakleekeeeikeleesleektle.......levcenelqrkkseaellrekvekleeelkelreelselsleeeeaa.le 116
                 + +k  +   l+++l  l+++l++++++ ++  ++l++k++e       l+ +++el+++k++++ + e++e+ ++e k+l +el++l+++ ++++ ++
  CCE29469.1  76 LVTKSLDAEGLRSELESLKKQLQQQDAKSQKKVKQLKTKSTEakglrseLQSLKKELEQQKTDNQKKVEQLETKSTEAKGLGSELQSLKKQLQQEKaYS 174
                 556666777899999999999999999999999999999999555555555566666666777777777777777788888888888777655554244 PP

        Fez1 117 sdeakaqrqeaeeleelkreverlraeLkeerqkkeeq 154
                 +d++++ +++++e+++l++e++ l+++L+++ +++e+ 
  CCE29469.1 175 QDKVEQLETKSTEAKNLRSELQSLKEQLQQKADSQEKV 212
                 55555556668899999999999999999998888775 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  34.2    0.0042       2.3     166     281 ..      84     201 ..      59     203 .. 0.57
   2 ?    8.8  26.1    0.0012      0.65     137     247 ..     125     230 ..     125     250 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0042
        Spc7 166 dellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervle...eck 261
                 + l  ele+ k++l+++ +k q+++++l++ +++e + lr+el++lk+e+e++k++ +++ eqle+++++ + l ++ ++l++++++++ + +   e+ 
  CCE29469.1  84 EGLRSELESLKKQLQQQDAKSQKKVKQLKT-KSTEAKGLRSELQSLKKELEQQKTDNQKKVEQLETKSTEAKGLGSELQSLKKQLQQEKAYSQdkvEQL 181
                 555555555555555555555555555443.55556666666666666666666666666666666666666666666666666666555444111334 PP

        Spc7 262 gwsesevsrlkeevkaleel 281
                 + +++e ++l++e+++l+e+
  CCE29469.1 182 ETKSTEAKNLRSELQSLKEQ 201
                 55666666666666666665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0012
        Spc7 137 legLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleek 235
                 l++Lk++le++ ++ ++  e+Le +  e++ l  el++ k++l++e +  q+++e+le+ +++e ++lr+el++lk++++    + a+ qe+++ l+++
  CCE29469.1 125 LQSLKKELEQQKTDNQKKVEQLETKSTEAKGLGSELQSLKKQLQQEKAYSQDKVEQLET-KSTEAKNLRSELQSLKEQLQ----QKADSQEKVAVLTKT 218
                 689*************************************************9999887.89999***************....88999999******* PP

        Spc7 236 ieelkeqksele 247
                 i+ l+e k++l+
  CCE29469.1 219 IQRLDEDKRKLR 230
                 **9999999876 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  40.1      0.05        27     199     331 ..      84     212 ..      30     214 .. 0.65
   2 ?    3.9   7.8     0.057        31     298     331 ..     179     212 ..     173     232 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.05
      HMMR_N 199 eeskakvaqLkekl....vslekekieekseteklleyieelsnvseqlekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekcklle 293
                 e  ++++  Lk +l     +++k+ ++ k+++ +     +el++++++le+ k d ++  e l++k  e + L s+L+  +++l+++    + k+++le
  CCE29469.1  84 EGLRSELESLKKQLqqqdAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQKKVEQLETKSTEAKGLGSELQSLKKQLQQEKAYSQDKVEQLE 182
                 333333333333320000223333333344444444455677777777777788888888888888888888888888877778877777788888887 PP

      HMMR_N 294 kekeelvreeeekeqtlsaEleelkeklklkeqeaqkl 331
                 ++           +++l +El++lke+l++k + ++k+
  CCE29469.1 183 TKST--------EAKNLRSELQSLKEQLQQKADSQEKV 212
                 6554........57899999999999999999888775 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.057
      HMMR_N 298 elvreeeekeqtlsaEleelkeklklkeqeaqkl 331
                 e+++ + + +++l +El++lke+l++k + ++k+
  CCE29469.1 179 EQLETKSTEAKNLRSELQSLKEQLQQKADSQEKV 212
                 3445555566677777777777777776666554 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.6    0.0019         1     115     169 ..      70     125 ..      30     130 .. 0.71
   2 ?   -0.5  12.9       1.4   7.7e+02      11      72 ..     124     185 ..     121     193 .. 0.52
   3 ?    8.3   6.9     0.003       1.6      17     101 ..     186     262 ..     170     265 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0019
     DUF4795 115 ldtLqeelkekld....rlelepLkeqleerlkelqkelqeamekedkedeaaglrkkL 169
                 ++  ++ +++ ld    r ele+Lk+ql+++  + qk++++   k    +ea glr +L
  CCE29469.1  70 VEFEKQLVTKSLDaeglRSELESLKKQLQQQDAKSQKKVKQLKTK---STEAKGLRSEL 125
                 33333556778889999************9999999999965444...4689***9998 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.4
     DUF4795  11 klqeaieklqeelekleekvkelekrledkekklealkkqieelekvkadkeeveeelaeka 72 
                 +lq+  ++l++++ ++++kv++le+++ + +     l++  ++l+++ka +++  e+l+ k+
  CCE29469.1 124 ELQSLKKELEQQKTDNQKKVEQLETKSTEAKGLGSELQSLKKQLQQEKAYSQDKVEQLETKS 185
                 34444455555555555555555555555555555555555555555555555555555554 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.003
     DUF4795  17 eklqeelekleekvkelekrledkekklealkkqieelekvkadkeeveeelaekadkeaLatkvsrdqfDeakkeLekmleell 101
                 ++ ++  ++l++ +++l ++++d ++k+ +l+k i++l++ k +       l+   + +aL+ kvs+d++ +++  ++++++e++
  CCE29469.1 186 TEAKNLRSELQSLKEQL-QQKADSQEKVAVLTKTIQRLDEDKRK-------LRGVIPGNALRHKVSDDEIRQRFVNIREKIQEVV 262
                 33332223333333333.45677889999999999999999999.......99999*************************9985 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  15.3     0.023        12      52     128 ..      85     167 ..      77     169 .. 0.82
   2 ?    6.7  10.9      0.01       5.6      53     124 ..     156     229 ..     148     232 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.023
    Lectin_N  52 qLqreLetLketfsnfssstlaeiqalss...qggslsekvtsleaklekkqqdlkadhselllh...vkqlvkdLrtLsCql 128
                  L++eLe+Lk++++   ++ + ++++l++   +++ l  +++sl+ +le+++ d ++   +l  +    k l ++L++L+ ql
  CCE29469.1  85 GLRSELESLKKQLQQQDAKSQKKVKQLKTkstEAKGLRSELQSLKKELEQQKTDNQKKVEQLETKsteAKGLGSELQSLKKQL 167
                 59**************99999999999983334778899*************9999988888654222788889999988887 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.01
    Lectin_N  53 LqreLetLketfsnfssstlaeiqalss...qggslsekvtsleaklekkqqdlkadhselllhvkqlvkdLrtL 124
                 L +eL++Lk++++   +  + ++++l++   ++++l  +++sl+ +l++ ++d ++  + l+  +++l +d r+L
  CCE29469.1 156 LGSELQSLKKQLQQEKAYSQDKVEQLETkstEAKNLRSELQSLKEQLQQ-KADSQEKVAVLTKTIQRLDEDKRKL 229
                 778*********998888888888887733258889999*******986.5788999**************9988 PP

>> Laminin_I  Laminin Domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  14.8    0.0041       2.3      15      87 ..      84     156 ..      76     160 .. 0.92
   2 ?    6.4  13.6     0.012       6.6      15      77 ..     154     216 ..     148     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0041
   Laminin_I  15 ykinanledltkeLqeklskesakkskieilekelesLaqeteeLqkkatqvlakaqkvnaesertlnnakeL 87 
                 +++ ++le l+k+Lq++  k ++k ++++ +  e ++L +e ++L k+++q   + qk  ++ e+ + +ak L
  CCE29469.1  84 EGLRSELESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQKKVEQLETKSTEAKGL 156
                 578899*******************************************999999999999999999888876 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.012
   Laminin_I  15 ykinanledltkeLqeklskesakkskieilekelesLaqeteeLqkkatqvlakaqkvnaes 77 
                 +++ ++l+ l+k+Lq+     + k +++e +  e ++L +e ++L ++++q  ++ +kv   +
  CCE29469.1 154 KGLGSELQSLKKQLQQEKAYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQKADSQEKVAVLT 216
                 67788999**********9999******************************99999996544 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  16.8   0.00016     0.089      20      83 ..      87     150 ..      62     158 .. 0.80
   2 ?    6.2  16.4     0.015       8.4      21      84 ..     123     186 ..     116     192 .. 0.91
   3 ?    1.3  13.3      0.48   2.6e+02      22      80 ..     159     216 ..     150     225 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00016
  Phage_GP20  20 ldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlkldn 83 
                  +e+e+ +++l++q ++ +k++++Lk+k+ +++ L  ++++l+++++++k++ ++k+++l+  +
  CCE29469.1  87 RSELESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQKKVEQLETKS 150
                 45666667777777777889**************************************998766 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.015
  Phage_GP20  21 deveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlkldna 84 
                 +e+++ +++l++q +d++k++e+L++k+ +++ L  ++++l+++++++ka ++ k+++l+  ++
  CCE29469.1 123 SELQSLKKELEQQKTDNQKKVEQLETKSTEAKGLGSELQSLKKQLQQEKAYSQDKVEQLETKST 186
                 6788999**************************************************9987665 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.48
  Phage_GP20  22 eveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlk 80 
                 e+++ +++l+++ +  + ++e+L++k+ ++++L  ++++l++++++ ka++++k+a l+
  CCE29469.1 159 ELQSLKKQLQQEKAYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQ-KADSQEKVAVLT 216
                 455556666666677899**************************99.899999988765 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  20.1    0.0055         3      20     167 ..      71     221 ..      62     261 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0055
  V_ATPase_I  20 afqrkfvkevrrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkel....nenleklkkelnelvelkavlekake 114
                 +f+++ v++    + +  +l+ l++++++++ + +k+ ++     +++++e + l +el++l++el+++    +++ e+l+++ +e++ l + l++ k+
  CCE29469.1  71 EFEKQLVTKSLDAEGLRSELESLKKQLQQQDAKSQKKVKQ----LKTKSTEAKGLRSELQSLKKELEQQktdnQKKVEQLETKSTEAKGLGSELQSLKK 165
                 5666666677777888899999999999966666666554....3444455555566666666666555100044555566666666666666666666 PP

  V_ATPase_I 115 fleee.eeeeeeeeseeeeeekeeeeeeese..eeeeeelleeeeelsfvaGvikr 167
                  l++e + ++++ e+ e++++++++ ++e +  +e+ +++++++e++ +++ +i+r
  CCE29469.1 166 QLQQEkAYSQDKVEQLETKSTEAKNLRSELQslKEQLQQKADSQEKVAVLTKTIQR 221
                 66665333332222222222222222222220022222222233335555555554 PP

>> IFT20  Intraflagellar transport complex B, subunit 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  12.0   0.00056       0.3      40     113 ..      60     136 ..      51     141 .. 0.82
   2 ?    2.8  13.8      0.23   1.3e+02      53     111 ..     143     204 ..     139     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00056
       IFT20  40 klvkelievleelakkvekeKlkAigarnllkseakq...reaeqqqlqaliaekkaeleRlrvelesLqkveqeqk 113
                 k+ +e+++   e+ k++ ++ l A g r  l+s +kq   ++a+ q+  ++++ k++e   lr+el+sL+k  ++qk
  CCE29469.1  60 KVSDEFMKRCVEFEKQLVTKSLDAEGLRSELESLKKQlqqQDAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQK 136
                 57889999999************************98433445555556677889999***********99554444 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.23
       IFT20  53 akkvekeKlkAigarnllkseakqreaeqqqlq...aliaekkaeleRlrvelesLqkveqe 111
                  +++e++  +A g    l+s +kq ++e++  q   ++++ k++e  +lr+el+sL++  q+
  CCE29469.1 143 VEQLETKSTEAKGLGSELQSLKKQLQQEKAYSQdkvEQLETKSTEAKNLRSELQSLKEQLQQ 204
                 57889999999999999999999988877766612256778999************987664 PP

>> SOBP  Sine oculis-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.5    0.0076       4.1      65     221 ..      74     245 ..      50     287 .. 0.45

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0076
        SOBP  65 aqLitPdlwlsncrsrsaspaskrsesvspeps.....ksaspsssptssnsskplisvassskllaeksqepaslveaplepkkqrkk.......... 148
                 +qL+t  l  + +rs  +s +++ +++  ++ +     k++s        +++    + +s +k l +++   ++ ve+ ++ k+++ k          
  CCE29469.1  74 KQLVTKSLDAEGLRSELESLKKQLQQQDAKSQKkvkqlKTKST-------EAKGLRSELQSLKKELEQQKTDNQKKVEQLET-KSTEAKglgselqslk 164
                 5677777776777777777666444443332222222222222.......22222222222233333322222222222222.1222222222222221 PP

        SOBP 149 ..kpglrkpkqvkagsskssetkagllqkq....qkalplsaeleess..vpkpflrpppsiqelqsslpnqslpkiappp 221
                    ++ +  +q k ++ ++++t+a++l ++    +++l+ +a+ +e++  ++k   r  ++  +l+ ++p + l +++ + 
  CCE29469.1 165 kqLQQEKAYSQDKVEQLETKSTEAKNLRSElqslKEQLQQKADSQEKVavLTKTIQRLDEDKRKLRGVIPGNALRHKVSDD 245
                 112222222222333333333333333333333333444444443333434444444455444455555555555555444 PP

>> GldM_N  GldM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  11.2     0.044        24      28      88 ..      90     150 ..      77     157 .. 0.82
   2 ?    9.0   7.5    0.0025       1.4      28     122 ..     160     260 ..     154     286 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.044
      GldM_N  28 yasleakaeenpekakewlekAkevkkksdelynyiealKeeivkeaggkdedvgeikakd 88 
                 ++sl+++++++ +k ++ +++ k  +++++ l + +++lK+e++++   ++++v+++++k+
  CCE29469.1  90 LESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQKKVEQLETKS 150
                 68899999999999999888888888999999999********999887666666666664 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0025
      GldM_N  28 yasleakaeenpekakewlekAkevkkksdelynyiealKeeivkeaggkded...vgeikakd.nldaaselmlaeg..ksgkGkeLkkkineyreel 120
                 ++sl+++++++++  ++ +e+ +  ++++++l + +++lKe++ ++a+ +++    +++i++ d ++ ++  ++  +   ++    e++++  + re++
  CCE29469.1 160 LQSLKKQLQQEKAYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQKADSQEKVavlTKTIQRLDeDKRKLRGVIPGNAlrHKVSDDEIRQRFVNIREKI 258
                 6899999999999999999999999999999*****************987777777778777734444444444333444444455555555555555 PP

      GldM_N 121 lk 122
                 ++
  CCE29469.1 259 QE 260
                 55 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   2.9     0.023        12      35      69 ..      71     105 ..      64     109 .. 0.82
   2 ?    3.8  10.6      0.15        79      33      76 ..     101     147 ..      98     148 .. 0.77
   3 ?    5.3   6.1     0.049        27      35      75 ..     141     181 ..     136     183 .. 0.75
   4 ?    4.9   6.6     0.067        36      31      72 ..     172     215 ..     170     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.023
  Fungal_TACC  35 kyqkkldklelenkslkqeieqLkkqleaerkEKq 69 
                   ++k+l   +l+ ++l++e+e+Lkkql+ + +  q
   CCE29469.1  71 EFEKQLVTKSLDAEGLRSELESLKKQLQQQDAKSQ 105
                  57788888899999*************99876555 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.15
  Fungal_TACC  33 eakyqkkldkle...lenkslkqeieqLkkqleaerkEKqeLlklld 76 
                  +ak qkk+++l+   +e k+l++e+++Lkk+le ++++ q+ ++ l+
   CCE29469.1 101 DAKSQKKVKQLKtksTEAKGLRSELQSLKKELEQQKTDNQKKVEQLE 147
                  56777777777622257889999*********999999998887776 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.049
  Fungal_TACC  35 kyqkkldklelenkslkqeieqLkkqleaerkEKqeLlkll 75 
                  k  ++l+  ++e k+l +e+++Lkkql+ e++  q+ ++ l
   CCE29469.1 141 KKVEQLETKSTEAKGLGSELQSLKKQLQQEKAYSQDKVEQL 181
                  334556666788999**************998777666655 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.067
  Fungal_TACC  31 gyeakyqkkldklelenkslkqeieqLkkqleae..rkEKqeLl 72 
                   y +   ++l+  ++e k+l++e+++Lk+ql+ +   +EK  +l
   CCE29469.1 172 AYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQKadSQEKVAVL 215
                  565555567777788999*************8651156766555 PP

>> Alpha-2-MRAP_C  Alpha-2-macroglobulin RAP, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   5.0      0.29   1.6e+02      91     162 ..      40     116 ..      18     130 .. 0.60
   2 ?    6.4  28.8     0.014       7.7      22     200 ..      88     260 ..      74     264 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.29
  Alpha-2-MRAP_C  91 hrelkdgfdrLerlaakgp..kskeFeepkV...qeLWklAkeanfsedeLeslkeELkhyesrleklrhlqaelel 162
                     ++ ++ + d+L++ +a+ p   s+eF  + V   ++L    ++a+  ++eLeslk+ L+  +++ +k  +  + ++ 
      CCE29469.1  40 QTRIEGKLDNLTKGVADLPfkVSDEFMKRCVefeKQLVTKSLDAEGLRSELESLKKQLQQQDAKSQKKVKQLKTKST 116
                     55666666666666666665556666666663333566666677777778888888888777776654433333333 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.014
  Alpha-2-MRAP_C  22 eeLekLkeEfkhhqeKideYnsLleelekeeekheNaiseeeldkvneieeeee..........kkkeylekenelkekhrelkdgfdrLerlaa 106
                     +eLe+Lk+ +++   K ++                   ++ ++++++ +  ++e          +k+++++k ++l++k +e k    +L+ l +
      CCE29469.1  88 SELESLKKQLQQQDAKSQKKV-----------------KQLKTKSTEAKGLRSElqslkkeleqQKTDNQKKVEQLETKSTEAKGLGSELQSLKK 165
                     566666666666666655443.................33333333333333333333333333447888999*********999999******* PP

  Alpha-2-MRAP_C 107 kgpkskeFeepkVqeLWklAkeanfsedeLeslkeELkhyesrleklrhlqael.elseeklkdeekkkekkekhkkleekikklgrkveklhed 200
                     + +++k + + kV +L    +ea+  ++eL+slke L+      ek   l +   +l+e+k+k +     ++ +hk  +++i++   +++   ++
      CCE29469.1 166 QLQQEKAYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQKADSQEKVAVLTKTIqRLDEDKRKLRGVIPGNALRHKVSDDEIRQRFVNIREKIQE 260
                     *************************************9988877887777666414666666666888888888888888888877777655554 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  32.9     0.045        25      24     267 ..      37     222 ..      26     260 .. 0.54

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.045
                 XXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXX CS
    Filament  24 EqenkeLeakieeleekksaevsklkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyekelnkreevEaelkalrkdld....eatla 118
                 E+   ++e k+ +l +     + k+++ + k   e  kql + + + + l+ el++l+++l++  +k +k++++ ++   e k+lr +l+    e+  +
  CCE29469.1  37 ENPQTRIEGKLDNLTKGVADLPFKVSDEFMKRCVEFEKQLVTKSLDAEGLRSELESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLRSELQslkkELEQQ 135
                 455555566666666655666666666666666666666666666666666666666666666666666665555555555555554333111123345 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HH CS
    Filament 119 rvdLekkvesLkeelaflkkvheeEvkelqkqvseqvlvevdaarkldLtei.lkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsake 216
                 ++d +kkve+L+      k +   E++ l+kq++++   + d++++l+ +++  k++r++  +l e+ +++a++  ++k++ l+++++           
  CCE29469.1 136 KTDNQKKVEQLETKSTEAKGL-GSELQSLKKQLQQEKAYSQDKVEQLETKSTeAKNLRSELQSLKEQLQQKADS--QEKVAVLTKTIQ----------- 220
                 666666666665554444443.4556666666665555555555555522221233444443333333333333..233333333333........... PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 217 eitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklsel 267
                                                                  +l
  CCE29469.1 221 -------------------------------------------------RL 222
                 .................................................33 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  29.8     0.014       7.7     113     236 ..      86     212 ..      73     246 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.014
     DUF4407 113 aeeqqeeakelkeqlaaaltaelaeleaqia...alqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld. 207
                  +   e+ k++ +q +a++++++++l+++ +    l++e+++++++l++++++ qk++++   t+ t  +G g + ++ k+ql++ +a  ++  ++l+ 
  CCE29469.1  86 LRSELESLKKQLQQQDAKSQKKVKQLKTKSTeakGLRSELQSLKKELEQQKTDNQKKVEQL-ETKSTEAKGLGSELQSLKKQLQQEKAYSQDKVEQLEt 183
                 4455555555555555556666666666554444899999999999999999999999974.4555667888888888665555555554444444444 PP

     DUF4407 208 atarlaalraelaeleaerakeraasqaa 236
                 ++++ ++lr+el++l+++++++++++++ 
  CCE29469.1 184 KSTEAKNLRSELQSLKEQLQQKADSQEKV 212
                 46666666666666666666655555543 PP

>> Cas_APE2256  CRISPR-associated protein (Cas_APE2256)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1       1.2   6.6e+02       5      35 ..      88     118 ..      84     122 .. 0.80
   2 ?    6.9   4.7      0.01       5.5       5      93 ..     123     211 ..     119     218 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.2
  Cas_APE2256   5 AElnallkllekkkkeqkeelvllssdTaaG 35 
                   El++l k l++++ ++++++  l +++ ++
   CCE29469.1  88 SELESLKKQLQQQDAKSQKKVKQLKTKSTEA 118
                  5999999999999999888888888777665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.01
  Cas_APE2256   5 AElnallkllekkkkeqkeelvllssdTaaGklvaeilkeylee..egaevevveieklsdlgree..FreglrnLveklarevknkkregek 93 
                   El++l k le++k+++++++  l +++ ++k  ++ l+   ++  +  +++  ++e+l+++++e   +r+ l+ L e+l+++     ++ ek
   CCE29469.1 123 SELQSLKKELEQQKTDNQKKVEQLETKSTEAKGLGSELQSLKKQlqQEKAYSQDKVEQLETKSTEAknLRSELQSLKEQLQQK----ADSQEK 211
                  59***************99****************999876555432222444444556655533222555555555555554....444444 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  16.2    0.0045       2.4      24     100 ..      73     149 ..      60     152 .. 0.89
   2 ?    4.7  25.4     0.064        35       2      97 ..      81     181 ..      80     190 .. 0.67
   3 ?    2.1  15.3       0.4   2.2e+02      30     100 ..     142     212 ..     138     222 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0045
                   CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  24 dkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100
                   +k++v + l+++  r el++   +lq++  + +k+++++k k  +a+ l+ e ++lk+el++ +++ ++  ++le++
    CCE29469.1  73 EKQLVTKSLDAEGLRSELESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQKKVEQLETK 149
                   5678889999999999***********************************************99999988888765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.064
                   --HHHHHH-HHHHHHHHCCCT.CCCHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   2 LDiklirenpeavkeklkkRg.edkadvdelleldekrrelqveleelqae....rNelskeIgkakkkkedaeeliaevkelkeelkaleaelkel 93 
                   LD   +r+++e +k++l++   +++++v++l    ++ + l++el++l++e    +   +k+++++  k  +a+ l  e ++lk++l++ +a  ++ 
    CCE29469.1  81 LDAEGLRSELESLKKQLQQQDaKSQKKVKQLKTKSTEAKGLRSELQSLKKEleqqKTDNQKKVEQLETKSTEAKGLGSELQSLKKQLQQEKAYSQDK 177
                   78999************98877777777777777777777777777777651111444566666666666666666666666666666666655555 PP

                   HHHH CS
  Seryl_tRNA_N  94 eael 97 
                    ++l
    CCE29469.1 178 VEQL 181
                   5554 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.4
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  30 elleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100
                   ++ +l++k  e++    elq+ +++l++e +   +k e+ e    e+k+l  el+ l+++l++  + +ek+
    CCE29469.1 142 KVEQLETKSTEAKGLGSELQSLKKQLQQEKAYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQKADSQEKV 212
                   55566666666666666666666666666555555446666666666666666666666666666665554 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  19.6     0.037        20      48     132 ..      79     156 ..      63     161 .. 0.72
   2 ?    7.0  20.0     0.011       6.2      46     130 ..     147     230 ..     144     259 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.037
  Jnk-SapK_ap_N  48 eeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkke 132
                    ++ ++e lr ele+L+++++++ ++++++ ++l  + ++ ++ r+elq+  ++le+++   +       +++++le k++e k  
     CCE29469.1  79 KSLDAEGLRSELESLKKQLQQQDAKSQKKVKQLKTKSTEAKGLRSELQSLKKELEQQKTDNQ-------KKVEQLETKSTEAKGL 156
                    56677888888888888888888888888888888877777777777777777777777777.......6667777776666655 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.011
  Jnk-SapK_ap_N  46 eeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelk 130
                    e +++e++ l  el++L++++++ek+ ++++ e+le + ++ ++ r+elq+  eql+++ +  e k+  +++ ++rl e + +l+
     CCE29469.1 147 ETKSTEAKGLGSELQSLKKQLQQEKAYSQDKVEQLETKSTEAKNLRSELQSLKEQLQQKADSQE-KVAVLTKTIQRLDEDKRKLR 230
                    567899999*****************************************************99.**************998875 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   4.4     0.029        16       1      28 [.      86     113 ..      86     119 .. 0.89
   2 ?    6.0   4.8     0.033        18       1      28 [.     121     148 ..     121     154 .. 0.90
   3 ?    1.6  14.0      0.82   4.5e+02       3      61 ..     158     223 ..     156     233 .. 0.51
   4 ?   -1.8   0.0       9.5   5.2e+03      18      37 ..     243     262 ..     236     265 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.029
     DUF4404   1 LkelLekLheeLeqnesldeetralLes 28 
                 L+++Le+L+++L+q+++ ++++ ++L++
  CCE29469.1  86 LRSELESLKKQLQQQDAKSQKKVKQLKT 113
                 899*************999999999986 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.033
     DUF4404   1 LkelLekLheeLeqnesldeetralLes 28 
                 L+++L++L++eLeq+++ ++++ ++Le+
  CCE29469.1 121 LRSELQSLKKELEQQKTDNQKKVEQLET 148
                 899**************99999999987 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.82
     DUF4404   3 elLekLheeLeqnesldeetralLes.......laedieellaeedaaaeeeelaerlneaverFe 61 
                 ++L++L+++L+q+++ ++++ ++Le+       l+++++ l ++ +++a+++e +  l+++++r  
  CCE29469.1 158 SELQSLKKQLQQEKAYSQDKVEQLETksteaknLRSELQSLKEQLQQKADSQEKVAVLTKTIQRLD 223
                 689999999997777777777777541111111333444333333333333334555555555555 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 9.5
     DUF4404  18 ldeetralLeslaedieell 37 
                  d+e r++  +++e+i+e++
  CCE29469.1 243 SDDEIRQRFVNIREKIQEVV 262
                 58888999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3470  (0.193541); expected 358.6 (0.02)
Passed bias filter:                      763  (0.0425568); expected 358.6 (0.02)
Passed Vit filter:                       267  (0.0148921); expected 17.9 (0.001)
Passed Fwd filter:                       129  (0.00719505); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 1.56u 0.38s 00:00:01.94 Elapsed: 00:00:00.53
# Mc/sec: 2007.89
//
Query:       CCE29470.1  [L=603]
Description: related to hsp70 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-11   42.3   0.1    1.4e-10   40.0   0.1    2.1  2  HSP70     Hsp70 protein
    8.9e-06   24.7   0.5    2.6e-05   23.2   0.4    1.8  2  MreB_Mbl  MreB/Mbl protein
  ------ inclusion threshold ------
      0.014   16.3   0.1      0.044   14.7   0.1    1.8  1  PE_PPE_C  Polymorphic PE/PPE proteins C terminal
      0.025   15.0   0.0      0.048   14.0   0.0    1.5  1  RuvX      Holliday junction resolvase


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.13   5.7e+02       1      22 [.      23      44 ..      23      74 .. 0.70
   2 !   40.0   0.1   3.2e-14   1.4e-10     129     350 ..     152     388 ..     111     411 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.13
                EEEEEEXSSEEEEEEEETTEEE CS
       HSP70  1 viGiDLGttnsvvavmeggkie 22
                +i +D Gtt+s va + +++i+
  CCE29470.1 23 IIALDFGTTYSGVAYCFANQID 44
                5789*******99976655543 PP

  == domain 2  score: 40.0 bits;  conditional E-value: 3.2e-14
                 HTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS....SCEEEEEEEEXSSXEEEEEEEEETTEEEEEEEEEETTXSH CS
       HSP70 129 lgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd....kernvlvyDlGggtfdvSilelekGvfevkaTagDthlGG 223
                 ++   ++ v++vPa + da ++at  A+++AG++++ +v ep Aaa+ Y +++ +    k+   +v D Gggt d    e+     ++k        GG
  CCE29470.1 152 MDICQKEFVLSVPAVWSDAAKNATLKAAELAGIESITVVKEPEAAAM-YSIKSLEfsikKNDAFVVCDAGGGTVDLISYEVMAVAPQLKLKELAPGTGG 249
                 33334677**************************************8.9**99999999999************9755555444333333333333444 PP

                 HHHHHHHHHHHHHHHHHHHSXX....GGGSHHHHHHHHHHHHHHHHHTTTS..SCSEEEEEEEEEETTT....EEEEEEEEHHHHHHHHHHHHHHTHHH CS
       HSP70 224 edfDealvehlveefkkkegid....lskdkkalqrlkeaaekaKkeLSss..kqteinleietvdedg....kdlseklsRakfeelvedllertlep 312
                       l + +++ +++  g d    l+ +k      k+  +++Kk++  +   +  +n+++ ++ ed+    +  + +l+   + ++ e+l+++++e 
  CCE29470.1 250 MAGSLGLNDRFAAAVEELVGDDqwlkLKMSKTWSIAEKQFDQEIKKSFRGEldVEYYVNFPMASLREDEdgglVSNTWRLTGLVLSRIFEPLIADIVEM 348
                 444444444444433333332200002222222111122222334433332112555666666666543223333444566666777777777777777 PP

                 HHHHHHHCTEE..GGGCSEEEEESGGGGSHHHHHHHHHHT CS
       HSP70 313 vekalkdaklk..keeidevvlvGGstRiPkvqelvkelf 350
                 +   ++  +lk  ++ i+ ++lvGG      + ++vk+ f
  CCE29470.1 349 IDYQVQAVRLKrpEKGISGILLVGGFGSSHYLMQRVKQHF 388
                 7777777777744456777777777666666666666555 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.4   5.7e-09   2.6e-05      75     162 ..     137     227 ..     123     240 .. 0.80
   2 ?   -2.8   0.0      0.49   2.2e+03     275     315 ..     366     407 ..     338     410 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5.7e-09
                 HHHHHHHHHHHHT.SS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHT....T--TTSSS-EEEEEE-SS-EEEEEE CS
    MreB_Mbl  75 eellkyfikkvkk.kkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGa....glpveepsgnmvvdiGggttevavi 162
                 e+ l+++ + v k    + +++ v++vP   ++  ++A  +aa+ aG +++++++ep aAA+ +    +  +++  + +v+d Gggt ++  i
  CCE29470.1 137 EHALEEIASAVPKaYMDICQKEFVLSVPAVWSDAAKNATLKAAELAGIESITVVKEPEAAAMYSikslEFSIKKNDAFVVCDAGGGTVDL--I 227
                 55566666666553455688999**************************************9654434889****************874..4 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.49
                 H-EEEESGGGGSBTHHHHHHHHH.SS-EEE-SSTTTHHHHHH CS
    MreB_Mbl 275 rgivltGGgallkgldkllseet.glpvkvaedpltcvakGt 315
                  gi+l+GG +  + l + +++++ ++++   +d+  +++kG+
  CCE29470.1 366 SGILLVGGFGSSHYLMQRVKQHFpRIQILQPQDAWAAIVKGS 407
                 489999998888888888887764688888888888888886 PP

>> PE_PPE_C  Polymorphic PE/PPE proteins C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   9.9e-06     0.044      13      49 ..     161     197 ..     160     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.9e-06
    PE_PPE_C  13 LSVPpsWaaaapaasaaaaalsgttaaaaaaaagaal 49 
                 LSVP+ W+ aa  a+  aa l g++  +  ++++aa+
  CCE29470.1 161 LSVPAVWSDAAKNATLKAAELAGIESITVVKEPEAAA 197
                 9***************999996666655555555443 PP

>> RuvX  Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.1e-05     0.048       2      46 ..      22      70 ..      21      86 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
                -EEEEEESSSEEEEEEE-S--SS---EEEEE.---H...HHHHHHHHHH CS
        RuvX  2 rilglDvGtkriGvAvsdplgilaspletie.rksk...ekdleelkel 46
                 i++lD+Gt   GvA++  ++i a+p+ +++  +++    +++ ++ e+
  CCE29470.1 22 LIIALDFGTTYSGVAYCFANQIDAKPVAIMNwPGNRgiaAPKIPTILEY 70
                589**************************99766664433444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4411.95
//
Query:       CCE29471.1  [L=582]
Description: related to hsp70 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-13   47.9   0.0    2.3e-12   45.9   0.0    1.7  2  HSP70     Hsp70 protein
    1.6e-06   27.2   0.4    5.9e-06   25.3   0.3    1.9  2  MreB_Mbl  MreB/Mbl protein
     0.0056   17.6   0.2       0.04   14.8   0.1    2.3  2  PE_PPE_C  Polymorphic PE/PPE proteins C terminal
  ------ inclusion threshold ------
      0.057   13.8   0.0       0.11   12.8   0.0    1.4  1  RuvX      Holliday junction resolvase


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       0.2     9e+02       1      17 [.      26      42 ..      26      78 .. 0.67
   2 !   45.9   0.0   5.1e-16   2.3e-12     133     363 ..     159     402 ..     114     422 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.2
                EEEEEEXSSEEEEEEEE CS
       HSP70  1 viGiDLGttnsvvavme 17
                +i +D Gtt+s va + 
  CCE29471.1 26 IIALDFGTTYSGVAYCF 42
                5789*******998643 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 5.1e-16
                 EEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS....SCEEEEEEEEXSSXEEEEEEEEE..TTEEEEEEEEEET..TXSH CS
       HSP70 133 vtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd....kernvlvyDlGggtfdvSilele..kGvfevkaTagDt..hlGG 223
                  ++ v++vPa + da ++at  A+++AG++++ +v ep Aaal Y ++  d    k+   +v D Gggt d    e+     +++vk     t    G 
  CCE29471.1 159 RKEFVLSVPAVWSDAAKNATLKAAELAGIKSVTVVKEPEAAAL-YSIKTLDfsirKKDAFVVCDAGGGTVDLISYEVMavAPQLKVKELVPGTggMAGS 256
                 35679*************************************9.9**999999999999************7655555123467776533222113444 PP

                 HHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTS..SCSEEEEEEEEEETTT....EEEEEEEEHHHHHHHHHHHHHHTHHHHHHH CS
       HSP70 224 edfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSss..kqteinleietvdedg....kdlseklsRakfeelvedllertlepveka 316
                     e+ +  + e +  ++ ++l+++k      ++  +++Kk++  +  ++  +n+++  +d+d+    +  + kl+ +++ ++ e+l++++l+ +e  
  CCE29471.1 257 LGLNERFASAVEELVGDHQWLELKSSKAWSFAERQFDQEIKKAFNGEleEEYYVNFPMGGLDDDKdsnlVSNTWKLTGHELSRIFEPLVADVLRMIEYQ 355
                 456666666666666667777887776544344444455666665541136778999999988544222223569************************ PP

                 HHHCTEE..GGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTH CS
       HSP70 317 lkdaklk..keeidevvlvGGstRiPkvqelvkelfgkepsktvnpDea 363
                 +++ +lk     i+++ lvGG      + ++vk+ f +   + ++p +a
  CCE29471.1 356 VQEVRLKrpGRGISAICLVGGFGSSNYLMQRVKQHFPQ--IQVLQPEDA 402
                 ******965589*********99999999999999864..344555554 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.3   1.3e-09   5.9e-06      90     169 ..     156     237 ..     128     244 .. 0.80
   2 ?   -1.6   0.0      0.21   9.3e+02     276     315 ..     370     410 ..     334     414 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.3e-09
                 -SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHT....T--TTSSS-EEEEEE-SS-EEEEEEETTEEEE CS
    MreB_Mbl  90 slskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGa....glpveepsgnmvvdiGggttevavislggivt 169
                  + +++ v++vP   ++  ++A  +aa+ aG ++v++++ep aAA+ +    +  + +  + +v+d Gggt +  +is+  + +
  CCE29471.1 156 DICRKEFVLSVPAVWSDAAKNATLKAAELAGIKSVTVVKEPEAAALYSiktlDFSIRKKDAFVVCDAGGGTVD--LISYEVMAV 237
                 45778899*************************************9654444899****************77..466665555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.21
                 -EEEESGGGGSBTHHHHHHHHH.SS-EEE-SSTTTHHHHHH CS
    MreB_Mbl 276 givltGGgallkgldkllseet.glpvkvaedpltcvakGt 315
                 +i+l+GG +  + l + +++++ +++v   ed+  +++kG+
  CCE29471.1 370 AICLVGGFGSSNYLMQRVKQHFpQIQVLQPEDAWAAIVKGA 410
                 58899999988998888888765899***********9997 PP

>> PE_PPE_C  Polymorphic PE/PPE proteins C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   8.9e-06      0.04      13      49 ..     164     200 ..     163     258 .. 0.87
   2 ?   -0.3   0.0      0.46     2e+03      33      73 ..     391     433 ..     381     440 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.9e-06
    PE_PPE_C  13 LSVPpsWaaaapaasaaaaalsgttaaaaaaaagaal 49 
                 LSVP+ W+ aa  a+  aa l g++ ++  ++++aa+
  CCE29471.1 164 LSVPAVWSDAAKNATLKAAELAGIKSVTVVKEPEAAA 200
                 9********************8777777777776654 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.46
    PE_PPE_C  33 lsgttaaaaaaaagaalggmPlaaagagga..aggaaprygfr 73 
                  +++++   + a++a + g+ l  +++++a  ++ a+ +yg +
  CCE29471.1 391 FPQIQVLQPEDAWAAIVKGAVLSKLPGQAAvtSTCATRHYGAK 433
                 5667777777888888887766666666666544455556655 PP

>> RuvX  Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.5e-05      0.11       2      43 ..      25      67 ..      24      79 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.5e-05
                -EEEEEESSSEEEEEEE-S--SS---EEEEE.---HHHHHHHH CS
        RuvX  2 rilglDvGtkriGvAvsdplgilaspletie.rkskekdleel 43
                 i++lD+Gt   GvA++  +++ a+p+ +++  +++  ++ ++
  CCE29471.1 25 LIIALDFGTTYSGVAYCFANQTDAKPVAIMKwPGNRGISAPKI 67
                589*************************999666654444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4605.98
//
Query:       CCE29472.1  [L=377]
Description: uncharacterized protein CPUR_03165 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.035   14.0   7.7       0.89    9.4   2.1    2.4  2  Dynactin_p22   Dynactin subunit p22
      0.098   13.1   5.5       0.14   12.6   3.4    2.3  2  DUF4140        N-terminal domain of unknown function (DUF4140
        1.3    8.5   7.0        1.9    8.0   7.0    1.2  1  Exonuc_VII_L   Exonuclease VII, large subunit
        3.7    8.4   6.6         37    5.4   0.7    3.4  2  M              M protein repeat


Domain annotation for each model (and alignments):
>> Dynactin_p22  Dynactin subunit p22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.1    0.0002      0.89       2      38 ..      56      92 ..      55      94 .. 0.84
   2 ?    9.1   1.4   0.00025       1.1       2      46 ..      88     132 ..      87     137 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0002
  Dynactin_p22  2 ldaLEeriaeLEkrvlGeekekekedesiidsLakvq 38
                  +++LE+r+++LE ++l e+++++++   ++ s+++++
    CCE29472.1 56 VEILEARLQSLETQMLQEKAQAKERVDGLTRSMQQLE 92
                  799*************999998888778888877765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00025
  Dynactin_p22   2 ldaLEeriaeLEkrvlGeekekekedesiidsLakvqkklssavs 46 
                   +++LEe  a+L++ +lG++ e++ +de i  + a+++++++++++
    CCE29472.1  88 MQQLEEEKAKLREVILGNSVEQKISDEDIKLRFANLRQQIQALAN 132
                   789*************************************99876 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.4   3.1e-05      0.14      33      87 ..      48     101 ..      44     112 .. 0.92
   2 ?   -1.1   0.0      0.59   2.7e+03      61      78 ..     114     131 ..      99     135 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.1e-05
     DUF4140  33 tldedSlrVegagaatildvqvervpnreaeeeelkalraeleeledelaalede 87 
                 +++e+Sl Ve  + a++++++++  +++ +++e+++ l++++++le+e+a+l++ 
  CCE29472.1  48 KVEEKSLEVEILE-ARLQSLETQMLQEKAQAKERVDGLTRSMQQLEEEKAKLREV 101
                 6899******998.7*****************99*****************9975 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.59
     DUF4140  61 eaeeeelkalraeleele 78 
                 e  + + + lr+++++l 
  CCE29472.1 114 EDIKLRFANLRQQIQALA 131
                 333335566666666654 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.0   0.00042       1.9     160     259 ..      16     130 ..       5     146 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00042
  Exonuc_VII_L 160 ikrlleekkqrleklasrl........kspeellerkrqrldeleerleralkkqlkkkrerleelkerl.k..ekleekkerl......kklkerl 239
                   +++ l++++q  ++l +r+        + +e+++e+k+ +++ le+rl++ l++q+ +++++ +e  + l +  ++lee+k++l      +++++++
    CCE29472.1  16 VENELQQERQSTDSLPTRVckklmrrrAGSETKVEEKSLEVEILEARLQS-LETQMLQEKAQAKERVDGLtRsmQQLEEEKAKLrevilgNSVEQKI 111
                   56777777788777776665444444245678999999999999999999.6666544444444444455335556666666664434433333333 PP

  Exonuc_VII_L 240 elleekkerleeleekleal 259
                   +  e+ k r+++l ++++al
    CCE29472.1 112 S-DEDIKLRFANLRQQIQAL 130
                   3.344444455555555544 PP

>> M  M protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.7    0.0083        37       5      16 ..      58      69 ..      57      79 .. 0.92
   2 ?    4.4   0.7     0.017        78       4      14 ..      89      99 ..      84     100 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0083
           M  5 eLEaelqeLeee 16
                 LEa+lq Le++
  CCE29472.1 58 ILEARLQSLETQ 69
                59********98 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.017
           M  4 keLEaelqeLe 14
                ++LE e+++L 
  CCE29472.1 89 QQLEEEKAKLR 99
                67777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1330  (0.0741815); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 2604.26
//
Query:       CCE29473.1  [L=579]
Description: related to hsp70 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-13   47.6   0.0    3.6e-12   45.3   0.0    1.9  2  HSP70     Hsp70 protein
    3.8e-07   29.3   0.3    9.2e-06   24.7   0.3    2.3  2  MreB_Mbl  MreB/Mbl protein
     0.0071   17.2   0.1      0.039   14.8   0.1    2.2  2  PE_PPE_C  Polymorphic PE/PPE proteins C terminal
  ------ inclusion threshold ------
      0.038   14.4   0.0      0.083   13.3   0.0    1.6  1  RuvX      Holliday junction resolvase


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.19   8.7e+02       1      17 [.      23      39 ..      23      75 .. 0.66
   2 !   45.3   0.0     8e-16   3.6e-12     110     363 ..     124     399 ..     112     419 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.19
                EEEEEEXSSEEEEEEEE CS
       HSP70  1 viGiDLGttnsvvavme 17
                +i +D Gtt+s va + 
  CCE29473.1 23 IIALDFGTTYSGVAYCF 39
                5789*******998643 PP

  == domain 2  score: 45.3 bits;  conditional E-value: 8e-16
                 HHHHHHHHHHHHHHHHHHHHTSBE.........EEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS....SCEEEEEEEEXS CS
       HSP70 110 peqisamvLkklketaeaylgkkv.........tdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd....kernvlvyDlGg 195
                 p +i+a +++ + e+a   ++++v         ++ v++vPa + da ++at  A+++AG++++ +v ep Aaal Y ++  d    k+   ++ D Gg
  CCE29473.1 124 PVEIAADFIRAIYEHALGEISTTVpkaymdicqKEFVLSVPAVWSDAAKNATLKAAELAGIKSVTVVKEPEAAAL-YSIKTLDfsigKNDAFVICDAGG 221
                 6666666666666666555555541111111115679*************************************9.*****99***99*********** PP

                 SXEEEEEEEEE..TTEEEEEEEEEET..TXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSS..CSEEEEEEEEEETTT.. CS
       HSP70 196 gtfdvSilele..kGvfevkaTagDt..hlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSssk..qteinleietvdedg.. 286
                 gt d    e+     +++vk     t    G     e+ +  + e +  ++ + l+++k      ++  +++Kk++  +   +  +n+++  + +d+  
  CCE29473.1 222 GTVDLISYEVMavAPQLKVKELVPGTggMAGSLGLNERFASAVEELVGDHQWLKLKSSKAWSFAERQFDQEIKKAFHGELeeEYYVNFPMAELWDDKds 320
                 ****76555551234666665332221133334455555555555555555566665544333333333455555554430056677777766553332 PP

                 ..EEEEEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEE..GGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTH CS
       HSP70 287 ..kdlseklsRakfeelvedllertlepvekalkdaklk..keeidevvlvGGstRiPkvqelvkelfgkepsktvnpDea 363
                   +  + kl+ +++ ++ e+l++++++ +e  +++ +lk  +  i+ + lvGG      + ++vk+ f +   + ++p +a
  CCE29473.1 321 nlVSNTWKLTGHELSRIFEPLVADIVKMIEYQVQEVRLKrpERGISGICLVGGFGSSNYLMQRVKQHFPQ--IQVLQPEDA 399
                 22233569******************************955567*********99999999999999864..344555554 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.3   2.1e-09   9.2e-06      89     169 ..     152     234 ..     122     241 .. 0.80
   2 ?    1.9   0.0     0.018        81     240     316 ..     332     408 ..     320     413 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.1e-09
                 S-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHT....T--TTSSS-EEEEEE-SS-EEEEEEETTEEEE CS
    MreB_Mbl  89 kslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGa....glpveepsgnmvvdiGggttevavislggivt 169
                   + +++ v++vP   ++  ++A  +aa+ aG ++v++++ep aAA+ +    +  + +  + +++d Gggt +  +is+  + +
  CCE29473.1 152 MDICQKEFVLSVPAVWSDAAKNATLKAAELAGIKSVTVVKEPEAAALYSiktlDFSIGKNDAFVICDAGGGTVD--LISYEVMAV 234
                 345778899*************************************97544448999***************77..466665555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH.SS-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 240 eevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseet.glpvkvaedpltcvakGtg 316
                 +e+++  +  v+ iv++++   +++           gi+l+GG +  + l + +++++ +++v   ed+  +++kG+ 
  CCE29473.1 332 HELSRIFEPLVADIVKMIEYQVQEVRLKRPE-RGISGICLVGGFGSSNYLMQRVKQHFpQIQVLQPEDAWAAIVKGAV 408
                 5555555555555555555554444332221.122599*****99999999999888769***************985 PP

>> PE_PPE_C  Polymorphic PE/PPE proteins C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   8.8e-06     0.039      13      49 ..     161     197 ..     160     256 .. 0.88
   2 ?   -0.9   0.0      0.75   3.3e+03      33      72 ..     388     429 ..     378     433 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.8e-06
    PE_PPE_C  13 LSVPpsWaaaapaasaaaaalsgttaaaaaaaagaal 49 
                 LSVP+ W+ aa  a+  aa l g++ ++  ++++aa+
  CCE29473.1 161 LSVPAVWSDAAKNATLKAAELAGIKSVTVVKEPEAAA 197
                 9********************8777777777776654 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.75
    PE_PPE_C  33 lsgttaaaaaaaagaalggmPlaaagagga..aggaaprygf 72 
                  +++++   + a++a + g+ l  +++++a  ++ a+ +yg 
  CCE29473.1 388 FPQIQVLQPEDAWAAIVKGAVLSKLPGQAAvtSTCATRHYGT 429
                 566777777788888888777777766666544446666665 PP

>> RuvX  Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.8e-05     0.083       2      47 ..      22      68 ..      21      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
                -EEEEEESSSEEEEEEE-S--SS---EEEEE.---HHHHHHHHHHHH CS
        RuvX  2 rilglDvGtkriGvAvsdplgilaspletie.rkskekdleelkelv 47
                 i++lD+Gt   GvA++  +++ a+p+ +++  +++  ++ ++  ++
  CCE29473.1 22 LIIALDFGTTYSGVAYCFANQTDAKPVAIMKwPGNRGVSAPKIPTVI 68
                589**************************997776655555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:01.72
# Mc/sec: 1020.56
//
Query:       CCE29474.1  [L=291]
Description: uncharacterized protein CPUR_03167 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.088   12.7   0.5       0.16   11.8   0.5    1.4  1  Dynactin_p22  Dynactin subunit p22
       0.16   11.7   0.1         13    5.5   0.0    2.5  2  EpuA          DNA-directed RNA polymerase subunit beta
       0.17   12.0   1.2        2.6    8.2   0.0    2.5  2  bZIP_2        Basic region leucine zipper


Domain annotation for each model (and alignments):
>> Dynactin_p22  Dynactin subunit p22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   2.6e-05      0.16       2      46 ..       3      47 ..       2      54 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.6e-05
  Dynactin_p22  2 ldaLEeriaeLEkrvlGeekekekedesiidsLakvqkklssavs 46
                  +++LEe  a L++ +lG++++++ +de i ++ a ++++++++++
    CCE29474.1  3 MQQLEEEKATLREVILGNSAKQKISDEDIKQRFASLRQQIQALAN 47
                  789*************************************99876 PP

>> EpuA  DNA-directed RNA polymerase subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2    0.0058        34      20      31 ..     229     240 ..     224     245 .. 0.88
   2 ?    5.5   0.0    0.0022        13      10      35 ..     242     267 ..     240     268 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0058
        EpuA  20 YgviGdgnpldv 31 
                 YgviG+g+ +++
  CCE29474.1 229 YGVIGGGKESNI 240
                 *******98887 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0022
        EpuA  10 lalaiGlmiGYgviGdgnpldvLspd 35 
                 +  ++G++  Y+v Gd +++ vL+p+
  CCE29474.1 242 AIPFCGALMKYTVNGDTEMSCVLEPA 267
                 5668999999*************986 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2     0.037   2.2e+02      34      46 ..       3      15 ..       1      18 [. 0.73
   2 ?    8.2   0.0   0.00044       2.6      22      45 ..      23      46 ..      22      52 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.037
                HHHHHHHHHHHHH CS
      bZIP_2 34 vkeLeeeNaqLrq 46
                +++Leee+a+Lr+
  CCE29474.1  3 MQQLEEEKATLRE 15
                6788888888876 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00044
                HHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 22 kkkakeeeleervkeLeeeNaqLr 45
                k+k+ +e++++r  +L++++++L 
  CCE29474.1 23 KQKISDEDIKQRFASLRQQIQALA 46
                99*******************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2083.08
//
Query:       CCE29475.1  [L=127]
Description: uncharacterized protein CPUR_03168 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1003.33
//
Query:       CCE29476.1  [L=231]
Description: uncharacterized protein CPUR_03169 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1686.10
//
Query:       CCE29477.1  [L=1748]
Description: probable tubulin gamma chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-67  225.0   0.0    2.1e-66  223.9   0.0    1.6  1  Tubulin          Tubulin/FtsZ family, GTPase domain
    1.8e-44  150.9   0.1    3.5e-44  150.0   0.1    1.5  1  Tubulin_C        Tubulin C-terminal domain
    1.3e-07   31.9   0.1    7.3e-07   29.5   0.1    2.1  1  Ran_BP1          RanBP1 domain
    1.7e-05   25.1   0.0    4.8e-05   23.6   0.0    1.8  1  Misat_Tub_SegII  Misato Segment II tubulin-like domain


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.9   0.0   4.7e-70   2.1e-66       1     196 [.    1292    1502 ..    1292    1503 .. 0.98

  Alignments for each domain:
  == domain 1  score: 223.9 bits;  conditional E-value: 4.7e-70
                  EEEEEEEHHHHHHHHHHHHH...HHHCH..............HHHT.....TTEEEEE....EEESBHHHHHTS-GS........EEEE--CCC..C CS
     Tubulin    1 eiivigvGqcGnqignelwellakehgiqsdg..........dslesfFsesgkveyiprsvaidtdpqvlneikags..elfnpnklllgkeg..a 83  
                  eii+i+ GqcGn ig+++w++l+ ehgi++dg          d++++f+++s++ +yipr+++id++p+v+n i++g+  +++np+++ +gk+g  a
  CCE29477.1 1292 EIITIQAGQCGNSIGSQFWQQLCLEHGISQDGnledfateggDRKDVFYYQSDDTRYIPRAILIDLEPRVINGIQNGPykNIYNPENFYVGKNGmgA 1388
                  7****************************999**************************************************************99* PP

                  TTC--TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--..GG.G-HHHHHHHHHHHHHHH CS
     Tubulin   84 gnngaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs..efsevvvepynailalkeli 178 
                  +nn+  gy++ g++++e+i+e+i++e++++dsl+gf++++s++GGTGSGlg+++le+l++++pk++++t++v+P   +  +vvv+pyn++l++++l+
  CCE29477.1 1389 ANNWGDGYQS-GEAVCEDIMEMIDREADGSDSLEGFMMLHSIAGGTGSGLGSFLLERLNDRFPKKIIQTYSVFPDttNSGDVVVHPYNSVLSMRRLV 1484
                  **********.****************************************************************98888***************** PP

                  HT-SEEEEEEHHHHHCCS CS
     Tubulin  179 eesdavividNdaLlkil 196 
                  +++d+v+v+dN aL +i+
  CCE29477.1 1485 QNADSVVVLDNGALSHIA 1502
                  **************9886 PP

>> Tubulin_C  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   0.1   7.9e-48   3.5e-44       1     124 [.    1552    1679 ..    1552    1681 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.0 bits;  conditional E-value: 7.9e-48
                  TTC-EEEEEEESSSCTT...TTTCS-HHHHHHHHHTCSGGGBSSSTSTTT.SSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTSTTTEEEEE CS
   Tubulin_C    1 PrlhFlltsyaPlvsae...kaavektsvqdvtrallepknimvkvdprk.gkylaiallirGdvepkevnkavqrikekkkaqfveWiptgikval 93  
                  Pr+hFl+t+y+P++ ++   +++v+kt+v dv+r+ll+pkn mv++ p k ++y++i+++i+G+v+p++v+k++ ri+e++ a+f++W+p++i+val
  CCE29477.1 1552 PRCHFLMTAYTPFTGDQveqAKTVRKTTVLDVMRRLLQPKNRMVSTVPGKkSCYISILNVIQGEVDPTDVHKSLLRIRERRLATFIPWGPASIQVAL 1648
                  9*************9999888999********************99987669********************************************* PP

                  EECECT-TTTSSCEEEEEEEEGGGHHHHHHH CS
   Tubulin_C   94 nkkspyvkkqskvsvlmlaNttsiaelfkrl 124 
                  +k+spy+  +++vs+lmlaN+tsia+lfkr+
  CCE29477.1 1649 TKRSPYIPMSHRVSGLMLANHTSIATLFKRI 1679
                  *****************************98 PP

>> Ran_BP1  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   1.6e-10   7.3e-07       2      75 ..    1170    1258 ..    1169    1289 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.6e-10
                  ---SSTTEEEEEEEEEEEEEE........ETTT.........TEEEEEEEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-TTS-EEES CS
     Ran_BP1    2 vksgEEdEevlfkqraKLfrf........daek.........kewkeRGvGdiKilkkkddekvRllmRrdqvlkvcaNhvitkemklkpl 75  
                  v++ +E+E+vl+++raK+++f        d  k         + w   G+G++++l++k+++ vRll+R +   +v +N  + +++k++  
  CCE29477.1 1170 VNAADENEDVLHEVRAKVLKFvtasdksdD--KdeaaaakvkSPWAVQGIGQLRLLQNKETKLVRLLLRTEPRGHVALNRALLPNLKYEAQ 1258
                  56789***************9655443331..13344444446799***************************************999864 PP

>> Misat_Tub_SegII  Misato Segment II tubulin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.1e-08   4.8e-05       1      68 [.    1291    1360 ..    1291    1384 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.1e-08
  Misat_Tub_SegII    1 rEivtlqlGnyaNyvgtHfWNt..Qesyftydeeeee...sev.dhdvlfregetkqgqvtytPRllivDlkgs 68  
                       rEi+t+q G+  N +g++fW +   e+ +++d + e+   +    +dv +     ++ ++ y+PR++++Dl+  
       CCE29477.1 1291 REIITIQAGQCGNSIGSQFWQQlcLEHGISQDGNLEDfatEGGdRKDVFYY----QSDDTRYIPRAILIDLEPR 1360
                       8*******************7522366666666666555322223455555....47889**********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.50
# Mc/sec: 10589.37
//
Query:       CCE29478.1  [L=905]
Description: uncharacterized protein CPUR_03171 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-32  111.4   0.0    1.1e-31  109.6   0.0    2.0  1  N_BRCA1_IG  Ig-like domain from next to BRCA1 gene
    3.4e-19   68.4  56.3    8.8e-07   28.6   8.2    4.5  4  ZZ          Zinc finger, ZZ type
    3.4e-05   24.1  42.9      0.024   15.0   9.6    4.5  4  C1_2        C1 domain


Domain annotation for each model (and alignments):
>> N_BRCA1_IG  Ig-like domain from next to BRCA1 gene
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.0   1.8e-35   1.1e-31       2     102 .]     671     783 ..     670     783 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 1.8e-35
  N_BRCA1_IG   2 ipdgtvvppgteftktWrlrNtGseaWpagtklvfvgGdkmg.s...........asaeessvsvpavapgeevevsvelkaPskpgryisywrlated 88 
                 i dgtv+pp+  f+++W lrN+G+++Wpag++++fvgGd+mg +           +sa++s+ + +++apgee+ +  +l++Ps+pg++isywrl+t+d
  CCE29478.1 671 IADGTVLPPDFVFQQMWVLRNEGKTTWPAGCSIKFVGGDYMGlVdsarpagvselVSASASTTNPQPLAPGEEWGFFTNLRTPSRPGKVISYWRLTTPD 769
                 89***************************************9769*********988899999************************************ PP

  N_BRCA1_IG  89 gseFGdrlwvdieV 102
                 g++FG+rlw+d++V
  CCE29478.1 770 GMRFGHRLWCDVDV 783
                 ************98 PP

>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6  14.4   6.5e-05      0.39       3      37 ..     252     287 ..     250     296 .. 0.84
   2 !   25.4   7.2   1.5e-09   8.9e-06       6      44 ..     373     410 ..     369     411 .. 0.82
   3 !   28.6   8.2   1.5e-10   8.8e-07       3      42 ..     440     479 ..     438     482 .. 0.91
   4 !   21.6   2.7   2.3e-08   0.00014      15      42 ..     526     554 ..     503     558 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.5e-05
                 S-EE-TTT-S..EESSEEEESSSS..S-EE-HHHHHH CS
          ZZ   3 kkytCdgCseapligvRyhclrcs..dYDLCqsCfst 37 
                 +++ C+ C    +  + yhc +c+  d+DLC sC  +
  CCE29478.1 252 FAVCCNFCER-NIPDTHYHCSICNdgDFDLCPSCHEQ 287
                 5789******.999*********8446*******987 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1.5e-09
                 E-TTT-S..EESSEEEESSSSS-EE-HHHHHH.H---SS CS
          ZZ   6 tCdgCseapligvRyhclrcsdYDLCqsCfsthkagkhk 44 
                 tC++C      +   hc+ c+d+DLCqsCf    a++h 
  CCE29478.1 373 TCNQCVRELPEREFLHCTECDDFDLCQSCFGR-DAHGHH 410
                 89***9966666678***************99.666664 PP

  == domain 3  score: 28.6 bits;  conditional E-value: 1.5e-10
                 S-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH..H--- CS
          ZZ   3 kkytCdgCseapligvRyhclrcsdYDLCqsCfst.hkagk 42 
                 + ++CdgC +  + gvR +cl c+d+D C +C +  h+ ++
  CCE29478.1 440 HHAICDGCDA-NITGVRHKCLDCPDWDYCAECVQNaHFVHP 479
                 6789******.************************998764 PP

  == domain 4  score: 21.6 bits;  conditional E-value: 2.3e-08
                 EESSEEEESSSSS-EE-HHHHHH..H--- CS
          ZZ  15 ligvRyhclrcsdYDLCqsCfst.hkagk 42 
                 + g Ry+c++c d D C +C+ +  ++++
  CCE29478.1 526 IRGIRYKCAVCHDVDFCANCEASpANEHN 554
                 5689*****************99665554 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   9.6     4e-06     0.024      19      46 ..     254     284 ..     235     285 .. 0.88
   2 !   14.2   5.9   6.6e-06      0.04      15      46 ..     368     401 ..     366     402 .. 0.82
   3 !    9.5   1.4    0.0002       1.2      14      47 .]     437     471 ..     410     471 .. 0.86
   4 ?    2.8   2.9     0.025   1.5e+02      28      46 ..     526     545 ..     478     546 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4e-06
        C1_2  19 fnCsaCgrkidgffYsCseCd...fslhvrC 46 
                   C+ C+r+i +++Y+Cs+C+   f l+ +C
  CCE29478.1 254 VCCNFCERNIPDTHYHCSICNdgdFDLCPSC 284
                 57********9999******5566******* PP

  == domain 2  score: 14.2 bits;  conditional E-value: 6.6e-06
        C1_2  15 ssesfnCsaCgrk.idgffYsCseC.dfslhvrC 46 
                 ss+ ++C+ C r+  + +f +C+eC df l+++C
  CCE29478.1 368 SSDLRTCNQCVRElPEREFLHCTECdDFDLCQSC 401
                 56789********544555******66******* PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0002
        C1_2  14 dssesfnCsaCgrkidgffYsCseC.dfslhvrCa 47 
                 ++     C++C+ +i+g + +C  C d   + +C+
  CCE29478.1 437 NQVHHAICDGCDANITGVRHKCLDCpDWDYCAECV 471
                 5555678******************99*9999996 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.025
        C1_2  28 idgffYsCseC.dfslhvrC 46 
                 i g +Y+C  C d+ ++ +C
  CCE29478.1 526 IRGIRYKCAVChDVDFCANC 545
                 56778***99*99****999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.41
# Mc/sec: 6667.22
//
Query:       CCE29479.1  [L=731]
Description: uncharacterized protein CPUR_03172 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-26   91.5   3.9    1.5e-25   89.9   3.9    1.9  1  Btz       CASC3/Barentsz eIF4AIII binding


Domain annotation for each model (and alignments):
>> Btz  CASC3/Barentsz eIF4AIII binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   3.9   8.5e-30   1.5e-25      23     129 ..     161     270 ..     148     271 .. 0.83

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 8.5e-30
         Btz  23 eerkrseaekkekeddsnPafvPkrGaFylHDdRtaeteangvrefeks.srvaglivaskv....arrklkdaaeedrWtHDrfeevaseqapksrae 116
                  er+r+e+e++++ ++++PafvP+rGaF++HD+R+ ++++ng+r+f++  +r+  + v +      ++ +  d+++++ WtHD++e+va++  p+ r++
  CCE29479.1 161 VERRRQEHEDYKRRREEDPAFVPNRGAFFMHDHRHPGPAGNGFRPFGRGrGRGGRFGVGGPFapfsHMHHATDPTTNSAWTHDMHEAVAEPA-PR-RPR 257
                 5799*****************************************9765555555444444455567899999999***********77665.66.479 PP

         Btz 117 lvssygydirned 129
                 +++ +++ ++n++
  CCE29479.1 258 QMPPSHEGPPNGT 270
                 9999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 5124.82
//
Query:       CCE29480.1  [L=291]
Description: uncharacterized protein CPUR_03173 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-36  126.0  28.1      3e-30  105.6  11.0    2.3  2  DUF5308        Family of unknown function (DUF5308)
  ------ inclusion threshold ------
      0.019   14.5  15.0      0.022   14.4  15.0    1.2  1  Exonuc_VII_L   Exonuclease VII, large subunit
        7.4    6.6  15.4        8.7    6.3  15.4    1.2  1  Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region
        7.5    4.7  53.7        9.6    4.3  53.7    1.0  1  PAT1           Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> DUF5308  Family of unknown function (DUF5308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6  11.0   6.8e-34     3e-30       1     130 [.       9     158 ..       9     161 .. 0.79
   2 !   23.5  14.0   1.2e-08   5.2e-05      81     165 .]     159     268 ..     143     268 .. 0.59

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 6.8e-34
     DUF5308   1 ptLslHLtDraLtPlltsarsqaqleaLtsLtstalsaheaasrlgLGapqrimVetessgpvvlqsyldpaeaa..................asssss 81 
                 ptL++HL+D++  P++ts++s++ql +Lts++  al +h+a +r+gLG+p+rimVe++++g+v+++++ld  e++                  +ss+++
  CCE29480.1   9 PTLAIHLADKNRDPIITSSSSPSQLASLTSIAAGALVSHSAIQRIGLGRPERIMVEYPDAGAVIIETFLDTPESVapavaagsaivpgkgsgaSSSQPQ 107
                 89*********************************************************************99999***************99666666 PP

     DUF5308  82 pesaasssadssrekktesaeaeeqdqlagaetssagsaaa..eeeeedaa 130
                 p++ ++++++++++++++ + ++e++ ++ ++ +++ ++ +  ++++++++
  CCE29480.1 108 PPPPQQQQQQHQQHQHQQLQLQQEEQLQQQKQRQHQRQQRQqhQQHHQQNP 158
                 666666666666666666665555555544444444333330033333333 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.2e-08
     DUF5308  81 spesaasssadssrekktesaeaeeq.dqlagaetssagsaaaeeee...............................edaapmLvgvvvAksaeeake 147
                  p+++ ++++++++++ ++++++++q +q +++ ++++                                        +da+p++ g v+A+s ++ + 
  CCE29480.1 159 PPQQKPQQQKKKQQQRGQQQQQHQPQlEQPQSQPQMQHP-------LqqqqqrqqtqlqrhrqlqlqqqappplkeahSDAPPLMAGFVIAASPRDLSR 250
                 222222222222222222111111110111111111111.......0122223455678889999999999******9********************* PP

     DUF5308 148 ArraaarLervgrevQre 165
                 A  a +r+e +g+++Q+e
  CCE29480.1 251 ASEALVRVEMLGKRLQEE 268
                 ****************86 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4  15.0   4.8e-06     0.022     143     243 ..     113     216 ..      27     269 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.8e-06
  Exonuc_VII_L 143 aeleeqleelerrlekaikrlleekkqrleklasrlkspeellerk..rqrldeleerleralkkqlkkkrerleelkerlk..ekleekkerlkkl 235
                   ++ +++ ++++++l+ + +++l+++kqr ++ ++r +++++  ++   +q+ ++ +++ ++   +q ++++ +le+ +++ +  + l+++++r +++
    CCE29480.1 113 QQQQQHQQHQHQQLQLQQEEQLQQQKQRQHQRQQRQQHQQHHQQNPppQQKPQQQKKKQQQ-RGQQQQQHQPQLEQPQSQPQmqHPLQQQQQRQQTQ 208
                   2334444555555555555555555555554444443222222221112222222222222.22233333333333332221222222222222111 PP

  Exonuc_VII_L 236 kerlelle 243
                    +r ++l+
    CCE29480.1 209 LQRHRQLQ 216
                   11111111 PP

>> Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  15.4    0.0019       8.7      96     190 ..     113     207 ..      79     274 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0019
  Asp-B-Hydro_N  96 kekqkveeevkEqlkkvkeeivvkeeeeegieeepqleeekkllkedsderqeeleagkvkeevEeslkveetvseeakkdmkekaseeeneksk 190
                    +++q+ ++  + ql+  +ee+ +++++ + + ++ q+++++++ +   +++ ++++ +++++ + ++ +  +  +++ +++m+   +++++ ++ 
     CCE29480.1 113 QQQQQHQQHQHQQLQLQQEEQLQQQKQRQHQRQQRQQHQQHHQQNPPPQQKPQQQKKKQQQRGQQQQQHQPQLEQPQSQPQMQHPLQQQQQRQQT 207
                    33333333333333333333332222222222222222222222222222222222222222222222222222222222222222222222222 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  53.7    0.0021       9.6     219     367 ..     105     252 ..      91     267 .. 0.45

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0021
        PAT1 219 aaasqqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtil.qrpqskqakpaepsasseaqeakqqappakvqptqilq 316
                 + ++  P+++q++++++++q+ + +q++q ++++++ q++++q +q+qq+++q+ p+++  q++++kq+++ +++++++ q ++ q++p++++p q  q
  CCE29480.1 105 QPQPPPPQQQQQQHQQHQHQQLQLQQEEQLQQQKQR-QHQRQQRQQHQQHHQQNPPPQQKpQQQKKKQQQRGQQQQQHQPQLEQPQSQPQMQHPLQQQQ 202
                 222233443333333333333322333333333322.23333333333344444444433033333344444444444444466677777788888544 PP

        PAT1 317 npnrlaarlelsqkeqaa.aqaapeqeakrqqssagkqaqiithpqqlaqls 367
                 +  r++++l+ +++ q + +++ p +ea+  +        i + p++l++ s
  CCE29480.1 203 Q--RQQTQLQRHRQLQLQqQAPPPLKEAHSDAPPLMAGFVIAASPRDLSRAS 252
                 4..4444443333333330333344445555444444555666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4142  (0.231022); expected 358.6 (0.02)
Passed bias filter:                      962  (0.0536561); expected 358.6 (0.02)
Passed Vit filter:                       436  (0.0243181); expected 17.9 (0.001)
Passed Fwd filter:                       127  (0.0070835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.43u 0.37s 00:00:01.79 Elapsed: 00:00:00.51
# Mc/sec: 1717.47
//
Query:       CCE29481.1  [L=684]
Description: probable transketolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.1e-154  511.5   0.0     1e-153  511.2   0.0    1.1  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
    6.2e-45  153.0   0.0    1.1e-44  152.2   0.0    1.4  1  Transket_pyr     Transketolase, pyrimidine binding domain
    2.5e-12   46.7   0.0    5.8e-12   45.6   0.0    1.7  1  Transketolase_C  Transketolase, C-terminal domain
    0.00092   18.5   0.0     0.0013   18.0   0.0    1.3  1  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
  ------ inclusion threshold ------
       0.11   11.4   0.0       0.18   10.7   0.0    1.2  1  E1_dh            Dehydrogenase E1 component


Domain annotation for each model (and alignments):
>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  511.2   0.0  2.9e-157    1e-153       2     334 .]       7     338 ..       6     338 .. 0.99

  Alignments for each domain:
  == domain 1  score: 511.2 bits;  conditional E-value: 2.9e-157
                      HHHHHHHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-SS CS
  Transketolase_N   2 dkkavnaiRvLavDavekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgskt 95 
                      d+ a+n+iR+LavDa  + +sGhPGap+g+a++a+vlf+k++k nP++pkw++RDRfvLsnGh+++l+Y+llhL Gydls++dlk+fr+++skt
       CCE29481.1   7 DQLAINTIRLLAVDATFNSNSGHPGAPMGMAPVAHVLFNKFMKFNPKNPKWLNRDRFVLSNGHGCMLQYALLHLFGYDLSIQDLKDFRTVDSKT 100
                      7899****************************************************************************************** PP

                      -SS--TTTSTT--S---STTHHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTE CS
  Transketolase_N  96 pGhPelghtagvevttGPLGqGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidG 189
                      pGhPe ++t+g+evttGPLGqG++navgla+a+++ aat+nkpgfd+vd+yty++lgDgclmeG+sseasslag+l+Lg+Li++yDdn+isidG
       CCE29481.1 101 PGHPEAHDTPGIEVTTGPLGQGVCNAVGLAMAQAHTAATFNKPGFDVVDNYTYCFLGDGCLMEGISSEASSLAGHLQLGNLICIYDDNHISIDG 194
                      ********************************************************************************************** PP

                      EGGGT--S-HHHHHHHTT-EEEEE.TTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTTTTTSGGGTSS---HHHHHHHHHHTTS-TT-T CS
  Transketolase_N 190 eteisftedvakrfeaygWhviev.edgedveaikaaieeakaekdkPsliklrtviGygspakagtedvhGapLgedevaalkkklGfdpeks 282
                      +t+ +ftedv kr+e+y+Whv+ v ++++d++ ++aai++ +++kdkPslikl+t+iGygs +++gt+ vhG+pL++d++++lk+k+ f  ++ 
       CCE29481.1 195 DTNCAFTEDVVKRYESYNWHVVIVeDGDNDLAGMEAAIKKCQEVKDKPSLIKLKTTIGYGS-LQEGTHGVHGSPLKADDIKQLKQKWNFP-QEA 286
                      *********************999667889*******************************.***************************6.*** PP

                      S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT--- CS
  Transketolase_N 283 fevpeevydaykekvaegakaeeeWeekfaaykkkapeeaaelerrlsgelP 334
                      f+vp+evy+ y ++  ega+ ee+W++++++y++k+p+e ++l rr +g+lP
       CCE29481.1 287 FHVPKEVYELYGKHSSEGAAYEEKWNQLMSKYAEKFPKEYEDLLRRQKGDLP 338
                      *************************************************998 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.0   3.1e-48   1.1e-44       3     176 ..     355     530 ..     353     531 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 3.1e-48
                   EEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT........TEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHG CS
  Transket_pyr   3 iawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg........egrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiy 91 
                   +a rk ++ +l+++  + pe+++++aD++g++++ +k+ +++q+        +gr++++g++E+++ ++++G+a+ g +  +++++F++F++    y
    CCE29481.1 355 VASRKLSETVLSKIESAIPELFGGSADLTGSNLTRWKEAVDFQPkatglgdySGRYVRYGVREHGMGAIMNGLAAYG-TILPYGGTFLNFVS----Y 446
                   67899************************************************************************.7*************....* PP

                   GHHHHHCHHHHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  92 adqairsgeakgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   a  a+r ++a+++++++ v t+++ig+gedGp+hq++e++a++r++p++ v+rP+d +et ++++ a++++  +P++++l++++l+
    CCE29481.1 447 AAGAVR-LSALSQIRCIwVATHDSIGLGEDGPTHQPIETLAHFRALPNCMVWRPADGNETSAAYYVALTSK-HTPSIMALSRQNLP 530
                   ******.**************************************************************65.79**********98 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.6e-15   5.8e-12       1     124 []     544     655 ..     544     655 .. 0.85

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 1.6e-15
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTT.TTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLeke.gisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdgld 93 
                      g++ ++  + +vtlv++Gs+v+ +leAa+ Le++  ++a++v++++++ +D +  +       rl v+ ++v++ ++  ev++++  e +++ +
       CCE29481.1 544 GYVLREVAEANVTLVSTGSEVSICLEAAKYLEEKhSVKARIVSIPCFEVFDAQSKE------YRLSVLPDGVPSLSV--EVMSTMGWERYTHEQ 629
                      788889999***********************999****************99887......9**********6555..777777774455555 PP

                      SEEEEEEE-SSSSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  94 apvkrvggpdviepgsaeelekafgldaeki 124
                        + r+     + +g++++++k f +++e i
       CCE29481.1 630 FGINRF-----GASGAYKDVYKKFEFTPEGI 655
                      555555.....6679999*********9987 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.7e-07    0.0013      96     178 ..     102     195 ..       1     276 [. 0.66

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.7e-07
  DXP_synthase_N  96 gfpkrsEseyDafeagHsstsisaalGlavardlkge..........kkkvvaviGDgaltgGmafealnnigelk.kkllvilNdNemsiskn 178
                     g+p+ ++ +   +++g  +  +  a+Gla+a+ ++            ++ + + +GDg l  G++ ea   +g+l+  +l+ i+ dN+ si+  
      CCE29481.1 102 GHPEAHDTPGIEVTTGPLGQGVCNAVGLAMAQAHTAAtfnkpgfdvvDNYTYCFLGDGCLMEGISSEASSLAGHLQlGNLICIYDDNHISIDGD 195
                     4444444444456777778889999999999887776566677777779999**********************97369***********9853 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     5e-05      0.18      98     223 ..     114     248 ..      91     252 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5e-05
                 EE-SSTTTHHHHHHHHHHHHH..........HHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--E.EEEEEEESEETTEEHHHH-S---GGG..TTT CS
       E1_dh  98 ggngivgaqvplvaGialaak..........iegkkevailliGDgAanqGdvyealnlaalwklpv.ifvveNNkygisTeaekasaskeladrargv 185
                  + g++g  v  + G+a+a+           ++  ++ + ++ GDg   +G+  ea  la   +l   i +   N++ i  +++ a  ++++++r   +
  CCE29481.1 114 VTTGPLGQGVCNAVGLAMAQAhtaatfnkpgFDVVDNYTYCFLGDGCLMEGISSEASSLAGHLQLGNlICIYDDNHISIDGDTNCA-FTEDVVKRYESY 211
                 55677777766667999999999999999999999**************************9999875888899***999888765.467888889999 PP

                 TS-EEEE.ETTSHHHHHH.HHHHHHHHHHTTT--EEEEEE CS
       E1_dh 186 gipglrV.dgnDplavye.AvkfAaeraregkgpllielv 223
                 +   + V dg+  la +e A k  +e     ++p+li l+
  CCE29481.1 212 NWHVVIVeDGDNDLAGMEaAIKKCQEV---KDKPSLIKLK 248
                 988888856755555544045544443...3568887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4888.00
//
Query:       CCE29482.1  [L=392]
Description: uncharacterized protein CPUR_03175 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.2e-113  377.1   0.0   7.2e-113  376.9   0.0    1.0  1  Methyltransf_34  Putative SAM-dependent methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_34  Putative SAM-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.9   0.0    4e-117  7.2e-113       1     306 []      50     385 ..      50     385 .. 0.95

  Alignments for each domain:
  == domain 1  score: 376.9 bits;  conditional E-value: 4e-117
  Methyltransf_34   1 fkeafkeeleseelkellqevksaLynrdfaaaFadakeelLeaYalRWspsRAlayasvlaslleveeleell.................eee 77 
                      f++af+++l+s+++  llqe+k+aLy+r+f +aF++  e +LeaYa+RWsp+RAl+yas+++++  +e+l+e+                  +  
       CCE29482.1  50 FSDAFSTVLSSDRFPVLLQEIKQALYQREFGTAFGN--EAYLEAYAARWSPTRALCYASIFMGI--QEHLDEMPspghigdlpiptegsdsT-- 137
                      889*********************************..9*************************..9999998899********97654421.. PP

  Methyltransf_34  78 eekeeeekee........................kklkvlciGGGagaElvalaallrekeeekessssslsltlvDiadWssvvkkLekaits 147
                         ++ee+ +                        ++l++lciGG+a aE+va+a++++      ++++++++ltl+D+++W+ +++ L++++ts
       CCE29482.1 138 ---SSEEQ-QqvlesgqegqhgggeasgpgpsqlNSLRMLCIGGCA-AEHVAFASYIQ------ATNNRHGHLTLLDSGPWAPITTLLQNSVTS 220
                      ...22222.135566889999*************9***********.***********......679999************************ PP

  Methyltransf_34 148 epllskyasaaa.aanaplleeerlevsfkkedvLklseeelksllekkpalvtllFtlnELftes.iskttkfLlrltaalkkgslLLvvdSp 239
                      +p lskyasaa  ++n++ll++++l+++f++e+vL+l++++l+++++++p++vtllFtlnEL+t + i+ktt+fL +l ++l++gslLLvvdSp
       CCE29482.1 221 PPSLSKYASAAVkDSNKALLDSNQLHCTFEQENVLALTKDQLAEVVGSQPQIVTLLFTLNELYTGAgIGKTTTFLRTLGSVLPAGSLLLVVDSP 314
                      ***********99***************************************************999*************************** PP

  Methyltransf_34 240 GsysevavgkeekkypmkfLldhtLlska....egkWeklesedsrwfrleeklkYpikLEnmRyqihlYr 306
                      Gsyse+avgke+kkypm++LldhtLl+++     ++We+les+ds wfrl+e+l+Ypi LE mRyq+hlYr
       CCE29482.1 315 GSYSEAAVGKEKKKYPMQWLLDHTLLQSKektpVYTWERLESHDSLWFRLPEELRYPIPLESMRYQLHLYR 385
                      ***************************99899899***********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3168.57
//
Query:       CCE29483.1  [L=945]
Description: related to SAC1-recessive suppressor of secretory defect [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-95  320.3   0.0    1.9e-95  319.9   0.0    1.2  1  Syja_N    SacI homology domain
      7e-40  135.3   0.0    1.2e-39  134.5   0.0    1.4  1  hSac2     Inositol phosphatase


Domain annotation for each model (and alignments):
>> Syja_N  SacI homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.9   0.0   2.1e-99   1.9e-95       1     320 []      63     523 ..      63     523 .. 0.93

  Alignments for each domain:
  == domain 1  score: 319.9 bits;  conditional E-value: 2.1e-99
      Syja_N   1 ygilGlirllsgsyllvitkreevgtlkgkkeiykitevellplsseeeaekalkslkakt...................................... 61 
                 +g++Gli++++ syl++it+r++v+++ g+ +iy +t v+++p+s+++ea++++ +++++                                       
  CCE29483.1  63 FGVIGLITVSRLSYLITITRRQQVAQVLGH-PIYVVTGVAITPCSTKKEADESVCRTATSLrketpddlnadgdssdediethdatvdeaekyvvdgdg 160
                 69********99**************7676.*************8887777777766555599************************************ PP

      Syja_N  62 .......................................................................ekkkeekeleekllklleklfessgsfY 89 
                                                                                        + +++  el +kll++++  f ss+sfY
  CCE29483.1 161 vpstpsrssvvedvmrrrgsygifaqrwfsksgwkmdqrrslglsisgtssptgpgedvppvaktpteedsQVQNQPTELLPKLLRTMQIFFGSSRSFY 259
                 *************************************************************99988876543333333388999999988899****** PP

      Syja_N  90 FsydlDltrslqrqlekssesskslplweraderFvWNrhllkplieaeldswllpviqGfveqsklkls..ksqke...................... 164
                 Fsyd+Dltrs  rq+ +   s+k+++l+++ad++F+WNrh+l+++i  ++ds++lp+iqGfv+q++++++  +  ++                      
  CCE29483.1 260 FSYDVDLTRSPTRQSLS---SNKHTALHTQADSHFFWNRHILQKFIAVGQDSVCLPIIQGFVGQRTFAVDsdP--AQmgeaatesmqptntsapasvpt 353
                 **************996...6888889************************************9999998542..335678888999************ PP

      Syja_N 165 ...............kekkevtltlisRrsrkraGtRylrRGiddeGnvANfvEtEqilevessekeskilSfvqiRGSiPlfWsqeptlkykpkirie 248
                                 ++k++ +t+isRrs++raG+RylrRGi+++G +AN+vEtEq+l++ + e+++ i SfvqiRGSiPlf++q+  +++kp + ++
  CCE29483.1 354 aspsfeiardsvdlrPTEKKYLITIISRRSVQRAGLRYLRRGINEDGFTANMVETEQVLSSPTWEPSTPIHSFVQIRGSIPLFFTQSA-YSLKPVPLMQ 451
                 ***************9999*****************************************9999999*******************88.677******* PP

      Syja_N 249 rseeenleafkkHfekllkrYgkvvvvnLlekkgrEkkLgeayekavkklnk.lekekkklkyveFDfhkeck 320
                 ++ e+n +a+++Hf++l + Yg++++vnL+ekkg E+++g+ y++ +++ln+ l   ++++ +++FDfh++c+
  CCE29483.1 452 HEAETNFKACRSHFDRLQSSYGALQIVNLVEKKGVEEPIGSLYQANIERLNEeL-GAENQIPFEWFDFHHACR 523
                 ***************************************************955.5669*************7 PP

>> hSac2  Inositol phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.0   1.4e-43   1.2e-39       1     114 [.     691     805 ..     691     806 .. 0.98

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 1.4e-43
       hSac2   1 dkavslakireeaiedckklvlsdedeeflggWlLlspdesnt.ksekeeervlLLTdkalyickydfnlekvssfervpLedikkIelGtyitstlsl 98 
                 d+avs+a++r++aie c+k+v++d++e+++ggW+L+sp+ +n  ks ++ee+vlLLTd+aly+c++d++++kvssf rvpL ++++I++Gtyitst+++
  CCE29483.1 691 DPAVSVANMRQRAIELCQKRVVADDSEDIHGGWALISPNAPNVvKSWPMEEVVLLLTDSALYLCRFDWDMDKVSSFDRVPLANLTHIKFGTYITSTVAP 789
                 5789********************9************************************************************************** PP

       hSac2  99 aqsdkkenyglrieye 114
                 a+ d+ +n g++i+y+
  CCE29483.1 790 AHLDEARNFGFVISYQ 805
                 ***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.39
# Mc/sec: 7181.72
//
Query:       CCE29484.1  [L=162]
Description: probable H+-transporting ATPase lipid-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-35  119.4  34.9    5.7e-22   77.8  15.6    2.1  2  ATP-synt_C  ATP synthase subunit C


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7  11.4   7.8e-17   1.4e-12       2      60 .]      18      76 ..      17      76 .. 0.97
   2 !   77.8  15.6   3.2e-26   5.7e-22       1      60 []      93     152 ..      93     152 .. 0.99

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 7.8e-17
                HHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C  2 gaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60
                g+ +a+++++lg+ +g++k g +++ + +++p+l++k ++++++a++i++ygL+v++++
  CCE29484.1 18 GCTCAIVFTCLGASYGTAKSGVGIAAMGVLRPDLIVKNIVPVIMAGIIGIYGLVVSVLI 76
                7889****************************************************997 PP

  == domain 2  score: 77.8 bits;  conditional E-value: 3.2e-26
                 HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   1 lgaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60 
                 +gaglavGl++l++G++iG++g+ag+r++a++p+lf+++++il+fae+++lygLival++
  CCE29484.1  93 FGAGLAVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLM 152
                 79********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1229.35
//
Query:       CCE29485.1  [L=568]
Description: probable sterol C-24 reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.6e-140  467.5  24.0   4.2e-140  467.3  24.0    1.0  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family


Domain annotation for each model (and alignments):
>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  467.3  24.0  2.3e-144  4.2e-140       4     432 .]     133     568 .]     130     568 .] 0.97

  Alignments for each domain:
  == domain 1  score: 467.3 bits;  conditional E-value: 2.3e-144
  ERG4_ERG24   4 eyefggeigalgikiglpvlelylnaiskfealklllpksldlaelkneikeldllvfegaiwerklftvfllfyvlqavlylllpGkvveGleLs..n 100
                 e+efgg+ g+l++++ +pvl+ y++  +  ++ k+        +++  + +el + v+ ga++++k+++ ++++ ++q   y +lpG++  G +L   +
  CCE29485.1 133 EFEFGGSWGTLSMMLLFPVLMWYMWIGATYYDGKFPS--RTPGQTWVSFASELANFVYIGAFPHAKAWLWYWSYLIFQGACYCILPGVWGWGKPLPheD 229
                 79***********************999998888755..555599**************************************************8789 PP

  ERG4_ERG24 101 gkkLkYkinalaslllvlaillvlqvtelfeltvlidnfvqlisvailfafalaivlYvrslkvkerkkdkqlaaggvsGnliYDffiGreLnPRl.gs 198
                 gk+LkY++na  +l+++lail++l++t l  l++ id+f++l+svail++f++++v Y  +l   +        +++++G+ iYDff+G+eLnPR+ g+
  CCE29485.1 230 GKQLKYFCNAYVTLYTTLAILAILHFTGLWPLYTAIDEFGPLLSVAILSGFLVSFVAYFSALYRGR--------QHRMTGYPIYDFFMGAELNPRMfGI 320
                 *************************************************************99888........7********************747* PP

  ERG4_ERG24 199 lDlkmFlelRlgllllllinlaallkqyklygkvtdslllvllaqllYvfdgvkneeavlttmDittdgFGFmLaFgdlvlvPftYslqtlYLsvh.Ps 296
                 lD+kmF e+R+++ +ll+++l+a+++q++ yg+v+ ++ ++++a++lY+++++k+ee+++tt+D+ +++FGFmL+F++l++vP  Y+++t+YL  h Ps
  CCE29485.1 321 LDFKMFAEVRMPWYILLILSLGAAARQWERYGYVSGEVWFLVMAHYLYANACAKGEELIITTWDMYYEKFGFMLIFWNLAGVPLSYCHCTIYLANHdPS 419
                 *************************************************************************************************** PP

  ERG4_ERG24 297 elgwst.vlvailvvlligyyiFrsansqknnFR...........tnPedpklkl..lkyiqtktGskLlvsGWyglarkinYlgDwlqslswsLatgf 381
                 e+ w    lvai +  l  y +++s+nsqkn FR           t+P+ p++++  +k i+t +G+ +lv+GWyglarki+Y++D+  ++sw+L+tgf
  CCE29485.1 420 EYRWNRaLLVAIFAAYLFWYWVWDSCNSQKNRFRamergkmiarnTFPQVPWQTIknPKTIETPQGT-ILVDGWYGLARKIHYTADFWFAMSWALITGF 517
                 ****99899*******************************************98777********97.679**************************** PP

  ERG4_ERG24 382 qsvlpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkkvpykiipyvy 432
                 +s++p+fy+++F ++++hR++RD ++C+ kYGe w +Y+++vpy +ipy+y
  CCE29485.1 518 KSPFPWFYPVFFCCMIIHRAARDIHRCRIKYGEYWLQYERQVPYLFIPYIY 568
                 **************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3971.15
//
Query:       CCE29486.1  [L=1813]
Description: related to phospholipase D [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-17   60.8   0.5    3.1e-07   30.3   0.2    2.7  2  PLDc      Phospholipase D Active site motif
    2.6e-11   43.6   0.0    4.9e-06   26.4   0.0    2.8  2  PLDc_2    PLD-like domain
    8.6e-05   22.5   0.2     0.0011   19.0   0.0    2.8  2  PX        PX domain


Domain annotation for each model (and alignments):
>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.2   5.1e-11   3.1e-07       2      28 .]     932     958 ..     931     958 .. 0.94
   2 !   28.1   0.0   2.5e-10   1.5e-06       6      28 .]    1240    1262 ..    1235    1262 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 5.1e-11
                 TBEE---EEEETTTEEEEE---SSHHH CS
        PLDc   2 mgthHqKivivDdrvafvGgaNLcdgr 28 
                 ++ hH+Ki ivD++vaf+Gg +Lc gr
  CCE29486.1 932 FFAHHEKICIVDHDVAFLGGVDLCFGR 958
                 579*********************997 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 2.5e-10
                  ---EEEETTTEEEEE---SSHHH CS
        PLDc    6 HqKivivDdrvafvGgaNLcdgr 28  
                  H+K++ivDdrv+++G+aN++ ++
  CCE29486.1 1240 HAKTIIVDDRVVLIGSANINERS 1262
                  ********************996 PP

>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   6.2e-06     0.037      20      99 ..     867     952 ..     838     961 .. 0.70
   2 !   26.4   0.0   8.3e-10   4.9e-06      79     121 ..    1231    1280 ..    1108    1285 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.2e-06
      PLDc_2  20 vsdreildallk.aakrgvkvrilldskkddagavdeaslkelkellleagvevrvfet......llgslHaKlylidgktvivGSs 99 
                 +s+++ ld+ll+ +a++gvk+ +++ ++  +a+++ + +  +++ l l+ ++ v+ +        ++   H+K++++d++++++G++
  CCE29486.1 867 ISQKWRLDRLLQkKAREGVKIFVIIYRN-VEAAVPIDSEYTKFSLLNLHPNIFVQRSPNqfkknqFFFAHHEKICIVDHDVAFLGGV 952
                 45666688997769999*********94.44555555555555555555555555543244444422567***************97 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 8.3e-10
      PLDc_2   79 l.....gslHaKlylidgktvivGSsNltkrgl..dlnlElnvviedkel 121 
                          +HaK++++d+++v++GS+N+++r++  +++ E++  + d ++
  CCE29486.1 1231 AlvteqLYIHAKTIIVDDRVVLIGSANINERSMlgSRDSECAALVRDTDM 1280
                  033444679************************87777788888887765 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.8e-07    0.0011      15     112 ..     464     659 ..     450     660 .. 0.90
   2 ?   -2.4   0.1      0.79   4.7e+03      16      43 ..     766     795 ..     757     798 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.8e-07
                 TTSSEEEEEEEEEETTS..SSEEEEEEEHHHHHHHHHHHHHHHT............TSTSTSSSTSGSSSSS........................... CS
          PX  15 gskkhsyylyevelktg..akewtvkRrYsdFeeLhskLlrkfp............rvkiPplPkkvlfgsv........................... 72 
                  +++h ++++e e+++g  + +w v R  +d+++Lh + ++               r k P++P +  ++                             
  CCE29486.1 464 DKDRHWIFTIELEYGSGpsRMSWIVTRTIKDIYNLHFRYKFALNndkymlgrelgaRPKQPKFPYSAFPYLRrargkgdesdeddqsvrgdetagevtg 562
                 57889999999999999*99****************876666668899**8888877788888888877666*************************** PP

                 ........................................................CTTSHHHHHHHHHHHHHHHHHHHTSCHHHH.SHHHHHHHHS CS
          PX  73 ........................................................rkkdeefiekrrkgLeeyLqrllnhpelrn.sevlteFLev 112
                                                                             ++ +ek+r+  e+yL ++++  ++r  s+ l +FLe 
  CCE29486.1 563 gedqldgtasgveghsqptrkksranlwgmrrrstgftdpgetsnpegpntpaidtVTRRQRYVEKQRRIVEKYLSEMIRWLMFRAdSNRLCRFLEL 659
                 ********************************************************8888***********************************96 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.79
                 TSSEEEEEEEEEETTS..SSEEEEEEEHHH CS
          PX  16 skkhsyylyevelktg..akewtvkRrYsd 43 
                 +k+h+++l + e+k +  +++++v R+++d
  CCE29486.1 766 QKHHTLTLHTSERKVRlfSRYQSVLRQFED 795
                 578888888888888899999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.47
# Mc/sec: 11584.28
//
Query:       CCE29487.1  [L=145]
Description: related to ubiquinone biosynthesis protein CAT5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-55  185.7   0.6    6.6e-55  185.5   0.6    1.0  1  COQ7            Ubiquinone biosynthesis protein COQ7
  ------ inclusion threshold ------
        0.1   11.0   0.0       0.12   10.7   0.0    1.1  1  Vitellogenin_N  Lipoprotein amino terminal region
       0.16   11.7   0.0       0.23   11.2   0.0    1.2  1  SopA_C          SopA-like catalytic domain
       0.18   11.7   0.0       0.28   11.2   0.0    1.4  1  T2SSF           Type II secretion system (T2SS), protein F


Domain annotation for each model (and alignments):
>> COQ7  Ubiquinone biosynthesis protein COQ7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.5   0.6   1.5e-58   6.6e-55      38     172 .]       1     145 []       1     145 [] 0.98

  Alignments for each domain:
  == domain 1  score: 185.5 bits;  conditional E-value: 1.5e-58
        COQ7  38 lkemleqEkeHlatfeellkerrvrpslllplwkvagfalGaltallGkeaamacteavEtvigeHYneqlreleelee..........eedkelleii 126
                 +++m +qE+ H++tf++l++++rvrp++l+plw+v +++lG+ tal+G+eaamacteavEt+ig+HYn+q+re+ ++ +          +e ++l +++
  CCE29487.1   1 MTHMFDQEAGHFRTFNHLIHKHRVRPTALYPLWSVLATGLGWSTALMGREAAMACTEAVETEIGDHYNSQIREVLAMITqwqeegydvsDEMRDLVNTL 99 
                 689***********************************************************************99888999******99********* PP

        COQ7 127 kqfrddEleHldtAvendaekapaykllsaviklgcrvaiavaeri 172
                 +++rd+EleHld+Av+nda+ka +++ll+ vi++gcr+ai+++er+
  CCE29487.1 100 RRIRDEELEHLDHAVDNDAKKAEPHWLLTGVIRAGCRGAIWASERV 145
                 ********************************************97 PP

>> Vitellogenin_N  Lipoprotein amino terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.7e-05      0.12     317     392 ..      67     139 ..      48     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.7e-05
                     HHHHHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTT..SHHHHHH..HHHHHHHH-SHHHH CS
  Vitellogenin_N 317 avklikeilkelvqnpsnevkedtlakfliLvrllrtaseeqleqlasqlya.ekkkarkweifldavaqagTepAl 392
                       ++i+e+l ++ q  ++    d+  ++  Lv+ lr    e+le+l + ++   kk   +w  +l  v++ag   A+
      CCE29487.1  67 YNSQIREVLAMITQWQEE--GYDVSDEMRDLVNTLRRIRDEELEHLDHAVDNdAKKAEPHW--LLTGVIRAGCRGAI 139
                     568999999999665555..88999***************************555556688..********987776 PP

>> SopA_C  SopA-like catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.2e-05      0.23     126     162 ..      42      78 ..      36      82 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.2e-05
                 HHHHHSSSSSSHSTTHHHHHHHHHHHHHHSHHHHTTT CS
      SopA_C 126 wkdallGlqGeatcaavvademlryarkyfpevlksv 162
                 w+ al+G++ +++c+  v  e+  + +    evl  +
  CCE29487.1  42 WSTALMGREAAMACTEAVETEIGDHYNSQIREVLAMI 78 
                 **************************99999999876 PP

>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.2e-05      0.28      11      54 ..      51      97 ..      43     123 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.2e-05
                TT--HHHHHH.HHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHC...T CS
       T2SSF 11 aGvplveaLe.llaeeaengplaeelkriarrlraGgslseale...r 54
                a +   ea+e  ++++  n +++e+l+ i ++ ++G+++s+ ++   +
  CCE29487.1 51 AAMACTEAVEtEIGDHY-NSQIREVLAMITQWQEEGYDVSDEMRdlvN 97
                55555666664455555.888888888888888888888888775541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 986.93
//
Query:       CCE29488.1  [L=593]
Description: related to Pol II transcription elongation factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-26   93.4   0.0    2.9e-26   92.1   0.0    1.7  1  Plus-3    Plus-3 domain
  ------ inclusion threshold ------
        1.4    9.0   4.6         13    5.8   0.7    2.9  3  ChapFlgA  Chaperone for flagella basal body P-ring formation


Domain annotation for each model (and alignments):
>> Plus-3  Plus-3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   3.2e-30   2.9e-26       1     108 [.     247     353 ..     247     354 .. 0.94

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 3.2e-30
      Plus-3   1 dlnkirlsRskleklleepffedavkgcfvRvkigeeretgqpvyrlaqivgvkeeekgkpyklkk..gkkttnkylklrhgkseksfrlekvSnspft 97 
                 d+++irl+R+++++++++p fe+a++gc++R+ +g ++etg ++yr+a i+g  +  +++py+l+   g ++t++y+k +hgk++k+f++   S s+ft
  CCE29488.1 247 DFERIRLGRNEFAQVCFTPGFESAITGCYIRIALGPHPETGVEQYRMAVIKGF-S--TSRPYALTGpqGAFVTDQYVKASHGKAVKEFPFIAASSSKFT 342
                 689***********************************************998.4..899****545569***************************** PP

      Plus-3  98 eeEferwkktl 108
                 ++E++r++  +
  CCE29488.1 343 DNELNRYQVIC 353
                 *******9766 PP

>> ChapFlgA  Chaperone for flagella basal body P-ring formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.7    0.0015        13       5      44 ..     115     155 ..     112     165 .. 0.80
   2 ?    3.5   0.0    0.0077        69      53      75 ..     339     361 ..     310     368 .. 0.83
   3 ?   -2.5   0.1      0.58   5.2e+03      16      55 ..     463     502 ..     453     505 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0015
    ChapFlgA   5 vaarpLkrgevitasdlalkkrdlsrlrggvlt.deaigkk 44 
                 +a r+++r++++++  +++++++++rl +++++ +e    k
  CCE29488.1 115 MAMREVEREQILEERTTEIERQRQNRLLRQMVEnEERKTVK 155
                 689*************************9999734433333 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0077
    ChapFlgA  53 qpirqnmlekpplVkkgqkVtii 75 
                 + ++ n+l++ ++++k+++V+i 
  CCE29488.1 339 SKFTDNELNRYQVICKNENVKIP 361
                 567899**************995 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.58
    ChapFlgA  16 itasdlalkkrdlsrlrggvltdeaigkkvkrsiragqpi 55 
                 + + + + ++++ + +r++ l+++a  +++ + +++g+++
  CCE29488.1 463 LAERNRENRRMNAELVRKAQLKEKAKSREIEMALKRGEAV 502
                 4455555556666666666666777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1741  (0.0971052); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 4052.98
//
Query:       CCE29489.1  [L=347]
Description: uncharacterized protein CPUR_03182 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.6e-132  440.8   0.0   4.1e-132  440.6   0.0    1.0  1  UPF0160   Uncharacterised protein family (UPF0160)


Domain annotation for each model (and alignments):
>> UPF0160  Uncharacterised protein family (UPF0160)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  440.6   0.0  2.3e-136  4.1e-132       1     317 []      14     346 ..      14     346 .. 0.97

  Alignments for each domain:
  == domain 1  score: 440.6 bits;  conditional E-value: 2.3e-136
     UPF0160   1 kigTHngkFhaDevlAvalLrllpeykdaelvRtrdpevleecdivvDVggvyDpakkryDHHqrefnetfsekaktklSSaGLvYkhfgkeiikkllk 99 
                 +igTHng+FhaDe+lAv++Lr+lpey+++ lvRtrdp+vle+c++vvDVg++yDp+++ryDHHqr+f++tf+ +  tklSSaGLvY+hfg++ii++ l 
  CCE29489.1  14 TIGTHNGHFHADEALAVHMLRMLPEYRHSPLVRTRDPKVLETCHTVVDVGSEYDPERHRYDHHQRGFTTTFPGR-PTKLSSAGLVYMHFGRAIIAQTLG 111
                 69**********************************************************************77.8*********************77 PP

     UPF0160 100 le..ldeeevellyeklyeefveaiDaiDnGisvyee.......vekkykikt.slssrvgrlnpewne......eekeedederFekAselvgeefle 182
                  +   ++++v ++++klye+fvea+Da+DnGis+y++       vek++k+++  l ++v+rln +wn+       +++++ed++Fe+As+ +geef++
  CCE29489.1 112 NGtkPEDTQVGIIHDKLYESFVEALDAHDNGISKYDTtllraagVEKRFKDGGfGLGAMVSRLNRNWNDpqpedpVAAQDAEDSNFEQASQRIGEEFER 210
                 667789999***************************************************************999999********************* PP

     UPF0160 183 kvkylakswlpareivkealekrkevdesgrilvlees.vpwkehllelekelkiekkvlyvlyed...eeekwrvqavpvskesfesrkpLpeeWrGl 277
                  ++y+++swlpareiv++a+e+r+e+d++grilv+e + +pwkehl+++e       +vlyvly++    ++kwr+q+vp+s++sf srkpLpe+WrG+
  CCE29489.1 211 DLQYFSRSWLPAREIVEKAFERRMEFDPQGRILVFEGQsLPWKEHLYRIEGGSA---SVLYVLYAEssaPGAKWRIQCVPESEDSFVSRKPLPEAWRGF 306
                 ***********************************6555***********8877...9******87677899*************************** PP

     UPF0160 278 rdeeLsevsgiegavFvHasgFiggnktkegalemAkkaL 317
                 rdeeL+++sg++g+vFvHa+gFiggnkt+eg+ emA kaL
  CCE29489.1 307 RDEELDTISGVKGCVFVHAAGFIGGNKTFEGVKEMAAKAL 346
                 *************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2740.08
//
Query:       CCE29490.1  [L=157]
Description: uncharacterized protein CPUR_03183 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-27   93.4   0.1      1e-26   92.9   0.1    1.3  1  Endosulfine  cAMP-regulated phosphoprotein/endosulfine conser


Domain annotation for each model (and alignments):
>> Endosulfine  cAMP-regulated phosphoprotein/endosulfine conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.1   5.7e-31     1e-26       1      76 [.      10      84 ..      10      88 .. 0.92

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 5.7e-31
  Endosulfine  1 dlsklspeelklyklyGkLPtkkdllskklqeRkYFDSgDYAlskagvaksqkaktglgskhPspertpeikqrss 76
                 d+s+lspee++l++lyGkLP+++d + k+l++RkYFDSgDYA+skag+ +  +  +++gs+hP pe++p+++++++
   CCE29490.1 10 DVSSLSPEEQRLFRLYGKLPSRSDQFAKHLKDRKYFDSGDYAMSKAGKGDGVD-AGSVGSEHPLPENIPHLSSPAP 84
                 789********************************************976555.59***************88765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1285.52
//
Query:       CCE29491.1  [L=670]
Description: related to gamma-glutamylcysteine synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-176  586.4   0.0     3e-176  586.2   0.0    1.1  1  GCS       Glutamate-cysteine ligase


Domain annotation for each model (and alignments):
>> GCS  Glutamate-cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  586.2   0.0  1.7e-180    3e-176       1     364 [.     237     624 ..     237     625 .. 0.98

  Alignments for each domain:
  == domain 1  score: 586.2 bits;  conditional E-value: 1.7e-180
         GCS   1 iymDamgfGmGsccLQvtfqaknieearllYdqlaplaPillalsaaspiykGlladvdvrwnvisasvDdrteeErgeeplknekkripksrydsvdl 99 
                 i+mDam+fGmGsccLQ+tfqakni+e+r++Ydql+pl+Pi+lal+aa+piykG+la++dvrwn+is++vD+rt+eE+ge+plkn+++ripksry+s+++
  CCE29491.1 237 IHMDAMAFGMGSCCLQITFQAKNITEGRQMYDQLSPLGPIMLALTAATPIYKGFLANTDVRWNQISRAVDCRTPEEMGEQPLKNDRWRIPKSRYASNST 335
                 8************************************************************************************************** PP

         GCS 100 ylseekrlreeyndlelpldeevlkklleagvdellakhiahlfirdplvifeekieqddekstdhFeniqstnWqtlrfKpPppesekigWrvefRpm 198
                 y+s++ rlreey+d +l++d e+++klle+g+d++la+h+ahlfirdp+vifee++++ d ++tdhFeniqstnWq++rfKpPp+e++ igWrvefRpm
  CCE29491.1 336 YISTDPRLREEYMDPDLVIDPEIKAKLLEGGMDDRLATHFAHLFIRDPIVIFEEDLQELDLTKTDHFENIQSTNWQHMRFKPPPAENN-IGWRVEFRPM 433
                 ************************************************************************************8777.********** PP

         GCS 199 evqltdfenaafsvfivLltrvilsfklnfyipiskvdenmkrAhkrdavleekfyfrkniakkeeaaekak........................eie 273
                 e+q+tdfenaafs+f+vL+tr++lsf+lnfyipi+kvdenm+rAh+ davl++ f+frkn ++ + +++++                         e++
  CCE29491.1 434 EIQITDFENAAFSIFMVLVTRAMLSFDLNFYIPIKKVDENMERAHALDAVLHQSFFFRKNPFPLRPSRANTVfgddsrpssampsrcgspglpveeEYR 532
                 ***************************************************************99987776699************************* PP

         GCS 274 emtideiingk.egefpglipliesylesvevdvetrkklekylkliskrasgelltaAkwiRefvakhpdYkkdSvvsdeinydLlkkvek 364
                 em+i++iing+ ++efpglip++esyl+sv+vdv+tr+++++yl+liskrasgel taA+wiR+fv  hp+Yk+dSvv d+i++dL+ +v +
  CCE29491.1 533 EMSINDIINGSpDEEFPGLIPIVESYLDSVNVDVDTRCQIATYLSLISKRASGELDTAARWIRNFVDVHPSYKHDSVVGDDITHDLIGAVIA 624
                 ***********999*************************************************************************98866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 5216.20
//
Query:       CCE29492.1  [L=587]
Description: related to NsdD protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4568.39
//
Query:       CCE29493.1  [L=631]
Description: probable beta-glucosidase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-27   96.5   0.0    3.1e-27   95.8   0.0    1.3  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    3.6e-09   36.9   0.0      1e-05   25.6   0.6    3.0  2  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.0   3.5e-31   3.1e-27     102     317 ..     132     339 ..      96     340 .. 0.82

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 3.5e-31
                    HHHHHHHHHHHHHHHHT--EE---B--.---STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHTT-EEEEEEETTGTT-SSET.....TTSEEB--- CS
  Glyco_hydro_3 102 likelgriiakelralgididfaPvvd.vnrdprngigvrsFsedpelvaalaaamvkGlqgagvaatvKHFpghGdgavds.....hkelptvdh 191
                    l ++ g +++ e    g+++ ++Pvv   +r  r g++ ++Fs dp+l + laa++++G+q++gv +++KHF++    +  +     + e + ++ 
     CCE29493.1 132 LTRKRGAAMGGEFGRKGLNVFLGPVVGpAGRIVRGGRNWEGFSTDPYLSSCLAARTIEGVQSEGVQTSLKHFIANE--QELNrrpvlGAEAVSSND 225
                    678899********************8355677777**************************************83..333211111223333333 PP

                    -..HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES- CS
  Glyco_hydro_3 192 s..eeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadrggkeeavvlaLkAGvDilLvp 285
                    +   ++   + l+++++  +     VM +   ++ ++++   +++k l ++L++elGF+G+vvsD+            ++a v+a  AG+D+++ +
     CCE29493.1 226 PnlDDRTMHEALSGWRTRWHRRTANVMCS---YQRVNNSYGCANSKTLNGLLKTELGFQGFVVSDWD----------AQRAGVAAALAGMDMAMPS 308
                    3114556667899******999999****...*******9999999999*****************9..........6677778888*******98 PP

                    S---SGHHHHHHHHHTTSS-HHHHHHHHHHHH CS
  Glyco_hydro_3 286 eertseikalkkavkeGeltearidesvrrvl 317
                    ++     k+l++avk+G+++e+++ + ++ vl
     CCE29493.1 309 PAEL-WGKYLVEAVKNGSVPESQVTDMAASVL 339
                    8773.58******************9999887 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00039       3.5       2      54 ..     360     462 ..     359     467 .. 0.86
   2 !   25.6   0.6   1.2e-09     1e-05     152     204 .]     467     543 ..     461     543 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00039
                      EEEEEGSS--S-S-STEEEEEESGGGS...................................................SS-SS-BSSS----S- CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................xxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C   2 VLLkNennlLPLkkklkkiaviGpnad...................................................etlklGggsgtvtvsy 44 
                      VL+kN +++L L +  ++i v+G +a+                                                   +tl+ Gggsg  t+  
       CCE29493.1 360 VLVKNTKGALLL-RFPRSISVFGYSARsargpapaadvlapsaddevsldmwrygqtsicvgqavegllgnaqpaatkGTLMGGGGSGGSTPAV 452
                      9*********88.55579********99999999999999999999999999999999999999999999999999988899999999998888 PP

                      --HHHHHHHH CS
                      xxxxxxxxxx RF
  Glyco_hydro_3_C  45 lvsplegire 54 
                      +vs  +++++
       CCE29493.1 453 FVSSHDALSR 462
                      8888887765 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 1.2e-09
                      HHHHHTTSS---B--SS-EESSSGGG.......................................S-----SETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxx.....xx.xxxxxxxx......................xxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 152 iadvLfGdvnPsGkLpvtfpksledl.....pd.dyyeekdt......................ykfegtplYpeGlglsY 204
                       +++L+G+++PsGk p+t +++++d+     pd ++    ++                      y+ + +p Y++G+glsY
       CCE29493.1 467 AVKLLYGEASPSGKFPYTLARNASDYghllsPDePA----RRfqnfsqsdftegvyldykyfdkYNVTPRPRYEFGFGLSY 543
                      5789*****************999994333322211....11223334455667777744444444444555888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 5087.62
//
Query:       CCE29494.1  [L=354]
Description: probable G protein alpha chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.3e-108  363.4   0.2   1.5e-108  363.2   0.2    1.0  1  G-alpha       G-protein alpha subunit
    3.2e-13   49.5   0.3    6.6e-08   32.2   0.1    2.5  2  Arf           ADP-ribosylation factor family
    8.2e-05   22.1   0.6      0.016   14.6   0.0    2.4  2  Gtr1_RagA     Gtr1/RagA G protein conserved region
     0.0036   17.5   0.1        2.2    8.5   0.0    2.4  2  Roc           Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.015   14.7   0.0      0.025   13.9   0.0    1.3  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.021   14.6   0.0      0.055   13.2   0.0    1.7  1  AAA_29        P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.2   0.2  4.9e-112  1.5e-108       3     354 .]      15     344 ..      13     344 .. 0.95

  Alignments for each domain:
  == domain 1  score: 363.2 bits;  conditional E-value: 4.9e-112
                 XXXXXXXXXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT.......HHHC-SS-SCCC CS
     G-alpha   3 tssaidkslkaerkarkkkrevkllllGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrsiktilealesleselsesfelqelkerldpl 101
                 +s+ id+ +++++k+  k  evkllllG++eSGKsTilkq++l+y +gf++ e+ +w++v+++ni++s++ti +a+++l+  ++    +++ k  ++ l
  CCE29494.1  15 RSRDIDRTIRQDEKRMAK--EVKLLLLGAGESGKSTILKQMRLIYSQGFNKIERLEWKPVVFSNIIQSFRTIHDAMTELHYGFD---TPENEKHMAHIL 108
                 7999********999999..**********************************************************877772...355555555666 PP

                 S-HCHHHH..........HHCCHHC-HCHHHHHHHHCCSHHHHHHHCCGCCTT--TTHHHHHCTHHHHCSTT----CHHHHCS-----SEEEEEEECT- CS
     G-alpha 102 kkveasliaklssateeeqeiefnpraevgedikaLwndpgiqelyerrnkiklednaeyFlddleritspdYlptddDilkarlktvGisetkfevds 200
                  ++e s            qe+ ++   ++  +ikaLw+d g+++ +++ n++ l dn++yF+dd++ri +  Y+p+++D+l++rl+t+Gi+e  f+++ 
  CCE29494.1 109 VDFEIS------------QEDRLPL--DYLVAIKALWQDSGVRKAIAKGNEYALHDNLAYFIDDMDRIWADGYVPNNQDLLRSRLRTTGITENVFDLG- 192
                 777776............9******..***********************************************************************. PP

                 TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHHHHHHCCCS-GGGC.CTT- CS
     G-alpha 201 klefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlDileeKlkkgklsky.fpsy 298
                 +l++r++dvgGqrserkkW+++f++v +++Flv++s++dq+l ed+  n+++e+l l+++i n+ +++++ +iLflnK+D+++eKl k++++ky f++y
  CCE29494.1 193 QLTYRMFDVGGQRSERKKWIHCFENVHCLLFLVAISGYDQCLVEDKDGNQMNEALMLWESIANSHWFNKSAMILFLNKMDLFREKLPKSPITKYgFTDY 291
                 *********************************************************************************************769*** PP

                 -H.CCHHHHHHHHHHHHHHCCCCCCESGGSCEEEEEE-TT-HHHHHHHHHHHHHHH CS
     G-alpha 299 egrkndlesvlkylrnkFeeihkeksnnrrkiythftsatdtkevqkviesvrdti 354
                  g  +d++ ++ky+ +kF+++ +   n++++iy hft+atdt+ ++ ++ sv+d+i
  CCE29494.1 292 HGPADDYKAASKYFLDKFRALSR---NPEKEIYGHFTNATDTNLLKITMGSVQDMI 344
                 *********************66...8889************************98 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.5e-06     0.013       8      35 ..      27      54 ..      21      75 .. 0.86
   2 !   32.2   0.1   2.2e-11   6.6e-08      44     129 ..     180     275 ..     170     286 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.5e-06
                GTT.TTEEEEEEEESTTSSHHHHHHHHH CS
         Arf  8 lklkkkelrilllGLDnaGKtTilkklk 35
                 k + ke+++lllG  ++GK+Tilk+++
  CCE29494.1 27 EKRMAKEVKLLLLGAGESGKSTILKQMR 54
                45678*******************9986 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 2.2e-11
                 SSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEE.....ETT.....-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTT CS
         Arf  44 PTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvv.....Dsa.....dreRleeakeeLkalleeeelkevallvlaNKqDlpe 129
                  T+g + +     +l+++++DvGGq++ R+ W + fe+++ ++f+v     D +     d + ++ea    +++ +++  ++ a++++ NK+Dl  
  CCE29494.1 180 RTTGITENVFDLGQLTYRMFDVGGQRSERKKWIHCFENVHCLLFLVaisgyDQClvedkDGNQMNEALMLWESIANSHWFNKSAMILFLNKMDLFR 275
                 5888888888999*******************************9833333221222114557888888888899999999************854 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.2    0.0027       8.1       1      17 [.      35      51 ..      35      63 .. 0.87
   2 !   14.6   0.0   5.2e-06     0.016      39     129 ..     185     279 ..     159     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0027
   Gtr1_RagA  1 kvLLmGksgsGKtsmrs 17
                k+LL+G ++sGK+++ +
  CCE29494.1 35 KLLLLGAGESGKSTILK 51
                89***********9965 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 5.2e-06
   Gtr1_RagA  39 ksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDve..........sr.eleedletlkeilealrqyspeakvfvlihKmDliqe 126
                  ++v  lg+lt  ++D+gGq++  ++       + f+nv  l++++ ++          +  +++e+l  l e++ + + +++ a +  +++KmDl +e
  CCE29494.1 185 TENVFDLGQLTYRMFDVGGQRSERKKW-----IHCFENVHCLLFLVAISgydqclvedkDGnQMNEALM-LWESIANSHWFNKSAMI-LFLNKMDLFRE 276
                 345557999***********9987775.....799**************99999998653324555554.55566677777777765.799*****998 PP

   Gtr1_RagA 127 der 129
                 +  
  CCE29494.1 277 KLP 279
                 765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00074       2.2       1      19 [.      35      53 ..      35      86 .. 0.91
   2 !    6.8   0.0    0.0025       7.5      49     119 ..     187     272 ..     164     273 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00074
                EEEEESSTTSSHHHHHHCH CS
         Roc  1 KvvlvGdsgvGKtsllkrf 19
                K++l+G +++GK+++lk++
  CCE29494.1 35 KLLLLGAGESGKSTILKQM 53
                89**************985 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0025
                 TBTTTTCEEEEEEEE-SGGCTTT.T-HHHHCTSCEEEEE....EE.........GHHHHCHHHHHHHHHHH.CSSS-EEEEEE-TT CS
         Roc  49 ndkkvkkvklniWDtaGqerfrs.lhplylreaalailv....yd.........srssenlkeWlkelkkv.agkspvilvgnkiD 119
                 n  ++ +++++++D++Gq   r+   +++ + + l++lv    yd         ++ +e l  W +  +++  +ks +il  nk+D
  CCE29494.1 187 NVFDLGQLTYRMFDVGGQRSERKkWIHCFENVHCLLFLVaisgYDqclvedkdgNQMNEALMLWESIANSHwFNKSAMILFLNKMD 272
                 44566789999*******98876367777777776666633334466654332222234556798888877457788999999999 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   8.3e-06     0.025      27      59 ..      19      53 ..       5      58 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.3e-06
                  TS-EEEEEGGGS-...SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 27 sgnplvldlkkma..shllvaGatgsGKStalntL 59
                  +++ +  d+k ma    ll++Ga +sGKSt l+ +
    CCE29494.1 19 IDRTIRQDEKRMAkeVKLLLLGAGESGKSTILKQM 53
                  67888889999998889**************9876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.8e-05     0.055      23      49 ..      33      59 ..      21      65 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.8e-05
      AAA_29 23 g.atlltGpsGsGKSTllDAiqalLvpa 49
                +   ll G+ +sGKST+l  ++ l++++
  CCE29494.1 33 EvKLLLLGAGESGKSTIL-KQMRLIYSQ 59
                3368*************9.455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2847.46
//
Query:       CCE29495.1  [L=292]
Description: SPE-3 spermidine synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-72  242.4   0.0    3.2e-72  241.9   0.0    1.2  1  Spermine_synth   Spermine/spermidine synthase domain
    4.5e-26   90.5   0.2    7.5e-26   89.8   0.2    1.4  1  Spermine_synt_N  Spermidine synthase tetramerisation domain
     0.0018   18.9   0.0     0.0037   17.9   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
       0.11   13.2   0.3       0.53   11.1   0.0    2.1  2  Methyltransf_12  Methyltransferase domain
       0.13   12.2   0.0       0.21   11.5   0.0    1.3  1  Methyltransf_18  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.9   0.0   8.9e-76   3.2e-72       1     181 [.      69     248 ..      69     255 .. 0.98

  Alignments for each domain:
  == domain 1  score: 241.9 bits;  conditional E-value: 8.9e-76
                     THHHHHHHHHHHHCCSSST-EEEEESSTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHSHHHHTTCGGCTTEEEEESTCHHHHCTCSS-EEE CS
  Spermine_synth   1 efaykemiahvplmlhknpkevLiiGGgDGgvlrevvkhntvekitlvdiDqkvidfskkflpslaisafndarvklvlgdgfkflkayekkfdv 95 
                     ef+y+emi+h+++++h+npk+vL+iGGgDGgvlre+vkh++ve++ l+diD+ v+ +sk++lp++a++ f++++ k+++gdgfkfl++y++ fdv
      CCE29495.1  69 EFSYQEMITHLAMHSHPNPKKVLVIGGGDGGVLREIVKHDCVEEAILCDIDEAVVRLSKQYLPNMAEG-FSHPKSKVHIGDGFKFLNDYKNCFDV 162
                     799*****************************************************************.************************** PP

                     EEEECCSTTCSSCGCSSHHHHHHHHHTEEEEEEEEEEE.EETTTCHHHHHHHHHHHHTTSSCEEEEEEEETTTSCSCEEEEEEEESS CS
  Spermine_synth  96 vivdsldpvgpaenlFskeffdllkkvlkedGviilqa.ekpelekelvinvdksgkqvfalqvepsavlvPtylsgminfvveskk 181
                     +i+ds+dp+gpae+lF+k++f+ll ++l+++Gvi++q+ e+ +l++ l+++++k++k++f+ ++e++++++Pty+sg+i+f+v+ k+
      CCE29495.1 163 IITDSSDPEGPAESLFKKPYFQLLHDALRDGGVITTQGsENQWLHLPLITQLKKDCKEIFP-VAEYAYTTIPTYPSGQIGFMVCCKD 248
                     **************************************9**********************.**********************988 PP

>> Spermine_synt_N  Spermidine synthase tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.2   2.1e-29   7.5e-26       1      53 []      12      66 ..      12      66 .. 0.99

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 2.1e-29
                     EEEEEEEE..TTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEET CS
  Spermine_synt_N  1 gWfteisd..pglalelkVekvLyeekSeyQdieifesktfGkvLvLDgvvqltE 53
                     gWf+eis+  pg+a++lkVekvL++ekS+yQd++if+s+++G+vLvLD+v+q+tE
       CCE29495.1 12 GWFREISEmwPGQAMTLKVEKVLHHEKSQYQDVLIFKSTDYGTVLVLDNVIQCTE 66
                     7*****************************************************9 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     1e-06    0.0037       1      73 [.      90     168 ..      90     194 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1e-06
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHH..TTT...TEEEEESBCCG.BSSSTTTEEEEEEEST CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraee..egl...nvefvqgdaed.lpfedgsfDlvvssga 73 
                      vL +G G G +++++ k+    ++ + +Di+e+ ++  ++ + +  eg+   + +++ gd  + l+  ++ fD+++   +
       CCE29495.1  90 VLVIGGGDGGVLREIVKH-DcVEEAILCDIDEAVVRLSKQYLPNmaEGFshpKSKVHIGDGFKfLNDYKNCFDVIITDSS 168
                      899*************99.4479****************9987777444555*********774788999*****98443 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.78   2.8e+03      65      93 ..      50      79 ..      24      82 .. 0.60
   2 ?   11.1   0.0   0.00015      0.53       1      41 [.      91     131 ..      91     167 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.78
  Methyltransf_12 65 ssfDlvvas.nvlhhlkdirevldnirklL 93
                       + +v+++ nv+++++  +++ +++  +L
       CCE29495.1 50 TDYGTVLVLdNVIQCTERDEFSYQEMITHL 79
                     334446666699999977777777766665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00015
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakekla 41 
                      L iG+G+G +lr++ ++    e + +Di+++++   k+ l 
       CCE29495.1  91 LVIGGGDGGVLREIVKHDCVEEAILCDIDEAVVRLSKQYLP 131
                      569**************8889999*********44444443 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.9e-05      0.21      15      88 ..      87     164 ..      77     165 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.9e-05
  Methyltransf_18  15 gsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniek..agl.edkievrlsdGleklkeee..vdtvvi 88 
                       ++v+ iG   g +  ++vk++ ++++i +Di e  ++ +k+ + +  +g+ + k +v+++dG++ l++ +  +d+ +i
       CCE29495.1  87 PKKVLVIGGGDGGVLREIVKHDCVEEAILCDIDEAVVRLSKQYLPNmaEGFsHPKSKVHIGDGFKFLNDYKncFDV-II 164
                      56777788888889999*********************99998776333443669************965443444.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2342.91
//
Query:       CCE29496.1  [L=337]
Description: probable nitrilase (NIT3) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-54  185.5   0.0    1.3e-54  185.3   0.0    1.1  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.3   0.0   7.1e-59   1.3e-54       1     259 [.      18     307 ..      18     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: 185.3 bits;  conditional E-value: 7.1e-59
                   EEEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBS.....SSHHHHHHHHB........HSSSHHHHHHHHHHHHHTEEEEEEEEE CS
  CN_hydrolase   1 rvAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgy.....keeahfleaAe........aglgetlallaalarkngiavviglie 84 
                   ++A++Ql++   d++anl+++++ +++Aa++ga+++vlPE+f+ +y             +Ae         +++++ ++l+a+a++n+i++++g i+
    CCE29496.1  18 KLACIQLASG-PDKAANLAHAASQVRQAASQGANIVVLPECFNSPYgcqffP---S---YAEtllpspptPEQSPSYHALSAMAAENKIYLIGGSIP 107
                   68*******6.8**********************************775552...2...22233455578899*********************666 PP

                   EEC.................CTTEEEEEEEEEEEETTSEEEEEEE-SS--E.ECTTSCECCGHHTSCS-SSS-EEEETTE.EEEEEEGGGGGSHHHH CS
  CN_hydrolase  85 rel.................tngklqayntavlldldgklvgkyrKlhLfp.geprpptaverelfepgdgipvfdtpvg.kiGaaiCyeigfpell 162
                   ++                  +++++  ynt +++d+ g+l+g +rK+hLf+ ++p++ t+ e+ +++pg+ i+ + +p    i +aiCy+i+fpe +
    CCE29496.1 108 EKYspaasttssasppqqqqQQPRF--YNTSLTFDPHGTLLGTHRKTHLFDiDIPGKITFKESDVLSPGNNITLIHLPEYgTIAVAICYDIRFPEMA 202
                   6556**************5555555..********************************************8888665544**************** PP

                   HHHHHTT-SEEEE.BH.GCCCTCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTE............E CS
  CN_hydrolase 163 ralalkgaeilvn.lserapvpksmgppqwellgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeeg............v 246
                    + a++ga  lv+ +     + + +gp +w ll+rara++n+++v+ ++++      +++ +ghS+++dp  r+l+++ eeee+            +
    CCE29496.1 203 TVAARRGAFALVYpG----AFNMTTGPLHWKLLARARAVDNQVYVAVCSPARD-LGAGYHAWGHSMVVDPMARVLVEAEEEEEEvrrddgdtqremI 294
                   *************53....57889**************************999.999**************************96666666666666 PP

                   EEEEEEHHHHHHH CS
  CN_hydrolase 247 liaeidladvrat 259
                   ++ae+  + +++t
    CCE29496.1 295 VQAELRPDVLAET 307
                   6666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2790.22
//
Query:       CCE29497.1  [L=206]
Description: uncharacterized protein CPUR_03190 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        2.1    8.5   8.4       0.24   11.5   3.7    1.6  2  Chromate_transp  Chromate transporter


Domain annotation for each model (and alignments):
>> Chromate_transp  Chromate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.15   2.6e+03      78      88 ..      12      22 ..       4      41 .. 0.51
   2 ?   11.5   3.7   1.3e-05      0.24      66     138 ..      83     170 ..      69     184 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.15
  Chromate_transp 78 lgfflPsflli 88
                     ++f++  +++i
       CCE29497.1 12 AAFTASTLMII 22
                     22222222222 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 1.3e-05
  Chromate_transp  66 lilgvlGaliatlgfflPsfllilllaplleklrknplvkaaleglnaavvglilaaalslakk......................iallafll 137
                      +++g+l+++ a+l++ +  ++li++    +++   +plv+++l  +  +   +i a+a+  + +                      i      +
       CCE29497.1  83 RTVGFLASFSAILCLATHVCFLIIITGGKYRRETGWPLVSGMLTVVAMTEFVVISAVAFL-FDHddqfaipdwsldvswtislasaI------A 169
                      33478888888888766666666665555666447***********99999999999984.34456666667677777664443321......2 PP

  Chromate_transp 138 l 138
                      +
       CCE29497.1 170 T 170
                      2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1698.29
//
Query:       CCE29498.1  [L=81]
Description: uncharacterized protein CPUR_03191 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 598.02
//
Query:       CCE29499.1  [L=241]
Description: uncharacterized protein CPUR_03192 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.4   0.3       0.47   10.3   0.3    1.9  1  RVT_3     Reverse transcriptase-like


Domain annotation for each model (and alignments):
>> RVT_3  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   2.6e-05      0.47       7      53 ..      95     141 ..      87     201 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.6e-05
       RVT_3   7 kkksgaggagvvirdsnGevllagaeklqgkasveeAElqALlrGLq 53 
                 +  +++++ g+vi   nG + + ++++ + ++s +eAEl+AL +  +
  CCE29499.1  95 NTMDRKSSQGYVIKSFNGLIAWRASKQDTVTTSTTEAELLALSQVAK 141
                 456789999****************997888899********86544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1871.03
//
Query:       CCE29500.1  [L=321]
Description: uncharacterized protein CPUR_03193 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-56  189.5   0.0    1.1e-55  189.2   0.0    1.1  1  PhyH            Phytanoyl-CoA dioxygenase (PhyH)
  ------ inclusion threshold ------
       0.13   12.7   0.0       0.45   11.0   0.0    1.9  2  2OG-FeII_Oxy_5  Putative 2OG-Fe(II) oxygenase


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.2   0.0   1.2e-59   1.1e-55       1     210 [.      15     289 ..      15     290 .. 0.89

  Alignments for each domain:
  == domain 1  score: 189.2 bits;  conditional E-value: 1.2e-59
                 HHHHSEEEETTSS-HHHHHHHHHHHHHH..........................HHHCHTTCCSEEEEECEEESTTCCCEE...CCCHHCHHHHTTH.. CS
        PhyH   1 feedGylviegflsaeevealraeieal..........................ldralesgdkidfffeekaaadedgll...eksinkvghflhp.. 68 
                 f++dGyl+i+++l +++v++l+ e++ l                          +d++l sgdki+fffee+a++++++l    e++ nk+gh lh   
  CCE29500.1  15 FHKDGYLIIRNALLPSTVTSLLHETRSLldnfsladhpltrfstgqgptsehlgDDYFLTSGDKIRFFFEEDAFDANAQLTrpkEQAVNKIGHGLHMas 113
                 89**************************************************************************88888**9************955 PP

                 HHHHHHHHHHHTSCEEEE..................EEEEEEEEEEEE-TTTCB-EEEEE-SGGGSTEESGCCEEEEEEESS-B-TTBT-EEEETTGGG CS
        PhyH  69 rkvadlvrailgqdvyva..................avlqsmyqdifkqpkiGgevqpwHqDstflptdpeesvvgvwialedateenGclrfiPGSHk 149
                 +    ++ +++  +++ +                  ++lqsm+  i+kqp+iGg+v p+HqDstfl+td+ +s++g+w+aledat enGcl f PGSH+
  CCE29500.1 114 P----VFARLIDHEAMTRtgevspagvaralgytdpRCLQSMV--ICKQPEIGGAV-PPHQDSTFLYTDE-PSATGFWYALEDATLENGCLTFWPGSHR 204
                 2....4444444444433444566777777788999*******..***********.************5.**************************** PP

                 S-CCGTCCHHCSGCCTTS.........................CCCTTTGHGSCEEEE.BTTTEEEEEETTSEEEE-TB.SSSXEE CS
        PhyH 150 weegplrrrlpeddteae.........................ddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksRr 210
                 w+ g ++r +++ ++e e                         + ++ + +e+ +vp evkaGd+vl+hg+llH+s++N+s+k R 
  CCE29500.1 205 WA-GVEKRLVRRRRGEGEgtemvrnegsrfprgcgpeagndedETKRGGCEEDAYVPGEVKAGDLVLIHGNLLHKSERNTSAKGRI 289
                 *5.445555555666666689*******************98666666779999*****************************996 PP

>> 2OG-FeII_Oxy_5  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.64   5.8e+03      68      83 ..     189     204 ..     169     216 .. 0.77
   2 ?   11.0   0.0     5e-05      0.45      61     100 ..     254     293 ..     224     294 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.64
  2OG-FeII_Oxy_5  68 vkpkeGdlvlFPswlr 83 
                      + ++G l ++P ++r
      CCE29500.1 189 ATLENGCLTFWPGSHR 204
                     5668899999998766 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 5e-05
  2OG-FeII_Oxy_5  61 enqslvdvkpkeGdlvlFPswlrHevlpnegeeeRisisf 100
                     e+ ++v  + k+Gdlvl    l H+  +n++ + Ri++ f
      CCE29500.1 254 EEDAYVPGEVKAGDLVLIHGNLLHKSERNTSAKGRIIYTF 293
                     34566777899*************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2492.42
//
Query:       CCE29501.1  [L=116]
Description: uncharacterized protein CPUR_03194 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 862.52
//
Query:       CCE29502.1  [L=456]
Description: uncharacterized protein CPUR_03195 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-22   77.6   0.1    8.3e-22   76.8   0.1    1.4  1  DUF2373   Uncharacterised conserved protein (DUF2373)


Domain annotation for each model (and alignments):
>> DUF2373  Uncharacterised conserved protein (DUF2373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.1   4.6e-26   8.3e-22       1      61 [.     192     252 ..     192     254 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 4.6e-26
     DUF2373   1 eYLiqfykdrsnWKFsKqkQnwLlkhlfdaeeipseyfellleYlkglkGgarerlleeak 61 
                 +YL+q++++r++WKF+K+ Q+ Llk +f+a+ ip++++ +++eY+++lkG +r+rl e+a+
  CCE29502.1 192 DYLRQWKSSRDSWKFNKNLQSLLLKRVFEADDIPTSDIGIFYEYIRDLKGFVRTRLHETAM 252
                 5*********************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1188  (0.0662614); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.48
# Mc/sec: 2854.79
//
Query:       CCE29503.1  [L=253]
Description: probable SCL1-20S proteasome subunit YC7ALPHA/Y8 (alpha1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-49  167.2   0.0      4e-49  166.7   0.0    1.1  1  Proteasome      Proteasome subunit
    1.5e-12   47.0   0.1    1.5e-12   47.0   0.1    1.7  2  Proteasome_A_N  Proteasome subunit A N-terminal signature
  ------ inclusion threshold ------
       0.13   11.4   0.0        0.2   10.8   0.0    1.2  1  IF-2B           Initiation factor 2 subunit family


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7   0.0   6.6e-53     4e-49       7     189 ..      36     218 ..      32     219 .. 0.97

  Alignments for each domain:
  == domain 1  score: 166.7 bits;  conditional E-value: 6.6e-53
                 EEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTTTTTS CS
  Proteasome   7 vvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgrrpfg 105
                 +vG++gkd++v+ ++k+++  +kl+++s+v++if+i++ +g++++G++aDar++++ra+ ea+++r+++g+++p ++l++r+a+  q+ytqr+++rp+g
  CCE29503.1  36 SVGVRGKDCAVVLSQKKVP--DKLIDPSSVSHIFQISPSVGCVITGSIADARAFAQRAQGEAAEFRYKFGYEMPADVLAKRLANISQVYTQRAYMRPYG 132
                 69*****************..****************************************************************************** PP

                 EEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHH....STTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEE CS
  Proteasome 106 vslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekey....kedltleeavelavkalkealerdklsgknievav 189
                 v++ i+++d e gp+Ly++dp+G yi++k  +a+G ++++a + lek++    + + t ee vela+ +l+ +l  d +++++ie+++
  CCE29503.1 133 VATTIISLDAEFGPQLYKCDPAGYYIGYK-GTAAGPKQQEALNHLEKKLrnkeHAEGTWEEVVELAITTLSTVLSMD-FKKGEIEIGI 218
                 *********9999***************8.*****889***********9877778999****************66.********98 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.1   2.5e-16   1.5e-12       1      23 []       6      28 ..       6      28 .. 0.99
   2 ?   -3.0   0.2         1     6e+03      13      17 ..      65      69 ..      65      69 .. 0.87

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 2.5e-16
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YDr++t+FS  GRL+QVEYA+kA
      CCE29503.1  6 YDRHITIFSDNGRLYQVEYAFKA 28
                    **********************9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1
  Proteasome_A_N 13 RLfQV 17
                    ++fQ+
      CCE29503.1 65 HIFQI 69
                    79**8 PP

>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.4e-05       0.2     146     184 ..      40      80 ..      38      84 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.4e-05
                 HHHTHHHHHHHTTXEEEEEEGGGHHHHHHC..TESEEEEEX CS
       IF-2B 146 qGrltakeLvqagipvtlitdsavayvmse..evdkvivGA 184
                  G+ +a+ L+q+++p +li  s+v+++++   +v +vi G 
  CCE29503.1  40 RGKDCAVVLSQKKVPDKLIDPSSVSHIFQIspSVGCVITGS 80 
                 6999*************************999******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1818.31
//
Query:       CCE29504.1  [L=686]
Description: uncharacterized protein CPUR_03197 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-08   34.7   0.4    4.3e-08   32.8   0.4    2.1  1  F-box       F-box domain
    3.6e-08   33.2   0.5    1.2e-07   31.5   0.5    1.9  1  F-box-like  F-box-like
    0.00038   20.8   2.9        9.7    6.8   0.0    5.2  6  LRR_4       Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.01   16.5   0.5      0.029   15.0   0.5    1.8  1  TPR_16      Tetratricopeptide repeat
      0.045   13.6   0.3        6.5    6.7   0.0    2.6  2  TPR_1       Tetratricopeptide repeat
       0.23   11.2   1.6        9.2    6.1   0.0    3.9  4  LRR_8       Leucine rich repeat


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.4   1.5e-11   4.3e-08       6      40 ..     182     216 ..     178     223 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.5e-11
                 S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box   6 LPsevlrhILerLplsdllalrrVSkgwrilidsd 40 
                 +P+e++ +I+++L++++l  + rV+k+w++ + ++
  CCE29504.1 182 MPPEIVTDIFSYLDFVELPVCLRVCKKWKNTLTRP 216
                 8*****************************99887 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.5     4e-11   1.2e-07       4      46 ..     182     226 ..     180     228 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 4e-11
  F-box-like   4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtp..lLWrrlv 46 
                  P+Ei  +IFsyL++ +L  + +VC++W++   ++p  +LWr++ 
  CCE29504.1 182 MPPEIVTDIFSYLDFVELPVCLRVCKKWKNTLTRPPhcELWRNMR 226
                 5*****************************997765447999876 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.4   7.3e+03       3      18 ..     282     294 ..     275     307 .. 0.53
   2 !    6.6   0.0    0.0037        11      14      32 ..     350     367 ..     335     375 .. 0.73
   3 ?   -3.1   0.0       4.2   1.2e+04      21      29 ..     401     409 ..     395     411 .. 0.69
   4 ?   -2.3   0.1       2.3   6.9e+03      20      30 ..     464     474 ..     458     476 .. 0.59
   5 ?    2.8   0.0     0.058   1.7e+02      10      39 ..     551     580 ..     549     586 .. 0.83
   6 !    6.8   0.0    0.0032       9.7      18      33 ..     591     605 ..     585     615 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.4
                 --EEE--SS---E-S- CS
       LRR_4   3 LevLdLsnNqltdipl 18 
                 Le+L L +  lt +pl
  CCE29504.1 282 LEILQLKG--LT-LPL 294
                 44444444..44.444 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0037
                 -E-S-HHH-TT--EEE-.- CS
       LRR_4  14 tdiplleklpnLkeLdLsg 32 
                 + +p l +lpnLk+L + g
  CCE29504.1 350 RGLPALPSLPNLKTLRM-G 367
                 56778778*******99.3 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4.2
                 H-TT--EEE CS
       LRR_4  21 klpnLkeLd 29 
                  +p+L++L 
  CCE29504.1 401 AFPKLEQLC 409
                 589999994 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.3
                 HH-TT--EEE- CS
       LRR_4  20 eklpnLkeLdL 30 
                   l +L++++L
  CCE29504.1 464 TRLNSLQHISL 474
                 34666777766 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.058
                 SS---E-S-HHH-TT--EEE-.-S-----G CS
       LRR_4  10 nNqltdiplleklpnLkeLdLsgNnlitdl 39 
                 +N+l+  ++l++ p+ ++L + +  +++dl
  CCE29504.1 551 DNHLKGYEWLRGAPSIQTLGCYQYRFLSDL 580
                 79*****************99665566665 PP

  == domain 6  score: 6.8 bits;  conditional E-value: 0.0032
                 -HHH-TT--EEE-.-S CS
       LRR_4  18 lleklpnLkeLdLsgN 33 
                 +l+ +pnL++L++ gN
  CCE29504.1 591 FLATFPNLRTLSI-GN 605
                 36679********.77 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.5   9.8e-06     0.029       9      49 ..      97     134 ..      95     144 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.8e-06
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                 + g+ d A++ +e+ l+++   P+ ++ +l lg++a ++g+
  CCE29504.1  97 AMGRLDLAEEDAEWILELA---PRLPDGYLRLGNIARQNGN 134
                 679****************...99999************97 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0022       6.5      11      33 ..      95     117 ..      93     118 .. 0.91
   2 ?    4.4   0.2     0.012        37       2      20 ..     120     138 ..     119     151 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0022
                 HHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  11 yfklgkydeAleyyekALelnPn 33 
                 +  +g++d A+e+ e  Lel P 
  CCE29504.1  95 HEAMGRLDLAEEDAEWILELAPR 117
                 679*****************995 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHTT-HHHH CS
       TPR_1   2 kalynlGnayfklgkydeA 20 
                 + + +lGn+ +++g+ + A
  CCE29504.1 120 DGYLRLGNIARQNGNDEYA 138
                 78************97766 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.9   8.7e+03       6      23 ..     292     309 ..     291     315 .. 0.52
   2 ?    6.1   0.0    0.0031       9.2      13      29 ..     341     357 ..     335     365 .. 0.73
   3 ?    1.0   0.3      0.12   3.7e+02      35      57 ..     455     475 ..     451     476 .. 0.74
   4 ?   -1.6   0.0      0.81   2.4e+03      23      33 ..     594     604 ..     588     609 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.9
                 EE-TTS--SEE-TTSSTT CS
       LRR_8   6 LdLsnNrltslddeaFkg 23 
                 L L+ Nr t l+  a ++
  CCE29504.1 292 LPLRENRWTRLRHVAIES 309
                 445666666666555544 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0031
                 -SEE-TTSSTT-TT--E CS
       LRR_8  13 ltslddeaFkglsnLkv 29 
                 l ++++++F+gl++L +
  CCE29504.1 341 LVGIPPQWFRGLPALPS 357
                 77788888888887755 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.12
                 S---GGGGGGGTT--S-.EEE-- CS
       LRR_8  35 NllttlspgafsgLpsLrsLdLs 57 
                 N+ +tl  + +  L+sL+++ L+
  CCE29504.1 455 NSRSTL--RHLTRLNSLQHISLD 475
                 666666..588899999999886 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.81
                 T-TT--EEE-- CS
       LRR_8  23 glsnLkvLdLs 33 
                 +++nL++L+++
  CCE29504.1 594 TFPNLRTLSIG 604
                 46666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4868.11
//
Query:       CCE29505.1  [L=641]
Description: uncharacterized protein CPUR_03198 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-05   24.6   1.5    3.9e-05   23.4   0.9    2.0  2  F-box       F-box domain
    1.8e-05   24.5   0.2    4.3e-05   23.3   0.2    1.6  1  F-box-like  F-box-like
  ------ inclusion threshold ------
      0.074   12.9   0.5        3.2    7.7   0.0    2.6  2  TPR_1       Tetratricopeptide repeat
        1.2    9.7   6.3         16    6.1   0.2    4.8  6  LRR_4       Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2   5.5e+03      30      47 ..     168     185 ..     166     186 .. 0.86
   2 !   23.4   0.9   8.6e-09   3.9e-05       8      40 ..     195     227 ..     189     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
                 -HHHHHHHTTHHHHHHHH CS
       F-box  30 Skgwrilidsdrlwcksi 47 
                 S ++ +l d  ++ ++++
  CCE29505.1 168 SPKLQQLFDAHKPLHWHF 185
                 88999********99986 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 8.6e-09
                 HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box   8 sevlrhILerLplsdllalrrVSkgwrilidsd 40 
                 +e + hI+++L + +l  + rV+k+w++ + + 
  CCE29505.1 195 PEMVTHIFSYLHFLELPVCLRVCKKWNSTLTRS 227
                 48899***********************88765 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.2   9.6e-09   4.3e-05       6      45 ..     195     236 ..     195     239 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 9.6e-09
  F-box-like   6 dEiLlqIFsyLppsdLlrlalVCrrWrrvaldtp..lLWrrl 45 
                 +E   +IFsyL++ +L  + +VC++W++   + p  +LWr++
  CCE29505.1 195 PEMVTHIFSYLHFLELPVCLRVCKKWNSTLTRSPhcELWRNM 236
                 68889***********************99444322788876 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00072       3.2      10      33 ..     105     128 ..     104     129 .. 0.93
   2 ?    2.6   0.3      0.03   1.3e+02       2      18 ..     131     147 ..     130     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00072
                 HHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  10 ayfklgkydeAleyyekALelnPn 33 
                 +y  +g++d A+e+ e  Lel P 
  CCE29505.1 105 MYEAMGRPDFAEEDAEWILELAPR 128
                 699******************995 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHTT-HH CS
       TPR_1   2 kalynlGnayfklgkyd 18 
                 + + +lGn+ ++ g+ +
  CCE29505.1 131 DGYLRLGNIAQQYGNDE 147
                 789*********99855 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.56   2.5e+03       1      27 [.     288     315 ..     287     329 .. 0.63
   2 ?   -0.3   0.0      0.36   1.6e+03      24      31 ..     346     353 ..     334     359 .. 0.75
   3 ?    6.1   0.2    0.0035        16      16      32 ..     363     378 ..     345     386 .. 0.76
   4 ?   -3.4   0.0       3.4   1.5e+04      22      29 ..     412     419 ..     406     421 .. 0.70
   5 ?   -2.3   0.0       1.5   6.8e+03      10      17 ..     491     498 ..     484     502 .. 0.67
   6 ?    1.7   0.1     0.084   3.8e+02      18      30 ..     548     560 ..     544     568 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.56
                 SS--EEE--SS---E-S-..HHH.-TT--E CS
       LRR_4   1 pnLevLdLsnNqltdipl..lek.lpnLke 27 
                 ++Le+L +++  l+ + l   e+  + L++
  CCE29505.1 288 TRLEHLEIRQ--LQGLTLplRENrWKRLRH 315
                 5788888886..555444313355666666 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.36
                 T--EEE-. CS
       LRR_4  24 nLkeLdLs 31 
                 +L++LdL 
  CCE29505.1 346 SLEHLDLV 353
                 67777774 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0035
                 -S-HHH-TT--EEE-.- CS
       LRR_4  16 iplleklpnLkeLdLsg 32 
                 +p+l +lpnLk+L + g
  CCE29505.1 363 LPGLPSLPNLKTLRM-G 378
                 556557*******99.3 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 3.4
                 -TT--EEE CS
       LRR_4  22 lpnLkeLd 29 
                 +p+L++L 
  CCE29505.1 412 FPKLEQLC 419
                 89999984 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 1.5
                 SS---E-S CS
       LRR_4  10 nNqltdip 17 
                 +Nqlt+++
  CCE29505.1 491 SNQLTSFD 498
                 37777765 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.084
                 -HHH-TT--EEE- CS
       LRR_4  18 lleklpnLkeLdL 30 
                 +l+ +pnL++L +
  CCE29505.1 548 FLATFPNLRTLRI 560
                 36679*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.22s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4671.35
//
Query:       CCE29506.1  [L=663]
Description: uncharacterized protein CPUR_03199 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-08   33.5   2.3    2.8e-08   33.5   2.3    1.9  2  F-box-like      F-box-like
    6.5e-08   32.3   1.2    6.5e-08   32.3   1.2    2.1  2  F-box           F-box domain
    0.00027   21.3   2.4    0.00059   20.2   2.4    1.5  1  CENP-B_dimeris  Centromere protein B dimerisation domain
     0.0027   18.1   0.2         61    4.2   0.0    5.6  7  LRR_4           Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.027   15.1   0.3        0.1   13.3   0.3    2.0  1  TPR_16          Tetratricopeptide repeat
      0.067   14.0   0.4       0.53   11.3   0.4    2.5  2  TPR_14          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       5.2   1.6e+04      28      35 ..      46      53 ..      44      55 .. 0.85
   2 !   33.5   2.3   9.4e-12   2.8e-08       4      47 ..     181     226 ..     178     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5.2
  F-box-like 28 CrrWrrva 35
                C++++++a
  CCE29506.1 46 CKDFQEAA 53
                ****9998 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 9.4e-12
  F-box-like   4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtp..lLWrrlvl 47 
                 LP+Ei  +IFsyL++ +L  + +VC++W++   ++p  +LWr++v+
  CCE29506.1 181 LPPEIVTHIFSYLHFLELPVCLRVCKKWNSTLTRPPhcELWRNMVF 226
                 9*******************************77764489999876 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.3       3.2   9.7e+03      25      41 ..      22      38 ..      21      45 .. 0.75
   2 !   32.3   1.2   2.2e-11   6.5e-08       4      40 ..     179     215 ..     177     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.2
                HHCTT-HHHHHHHTTHH CS
       F-box 25 alrrVSkgwrilidsdr 41
                al++V k +r++ +++ 
  CCE29506.1 22 ALMLVTKAMRSCPCNKG 38
                79999999999976665 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 2.2e-11
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwrilidsd 40 
                 + LP+e++ hI+++L + +l  + rV+k+w++ + ++
  CCE29506.1 179 LLLPPEIVTHIFSYLHFLELPVCLRVCKKWNSTLTRP 215
                 57******************************99887 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   2.4     2e-07   0.00059      20      52 ..     351     384 ..     344     391 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2e-07
  CENP-B_dimeris  20 eeeeeedeededeeddeddd.evpvpsfgeamay 52 
                     ++e+e+++ed+de+ddedd  ++p+p +  ama+
      CCE29506.1 351 NHENEDENEDDDEDDDEDDHrKIPLPIIPLAMAF 384
                     44566666777777777664279*****999998 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.4   7.1e+03      23      30 ..     232     239 ..     227     260 .. 0.67
   2 ?    4.2   0.0      0.02        61      13      32 ..     307     323 ..     289     329 .. 0.65
   3 ?   -0.6   0.0      0.69   2.1e+03      19      29 ..     380     391 ..     372     396 .. 0.72
   4 ?   -2.0   0.0       1.9   5.6e+03      36      41 ..     426     431 ..     415     456 .. 0.55
   5 ?   -3.6   0.0         6   1.8e+04      11      17 ..     514     520 ..     507     522 .. 0.58
   6 ?    0.5   0.0       0.3   8.9e+02      13      30 ..     533     550 ..     531     556 .. 0.84
   7 ?    4.0   0.0     0.024        71      18      33 ..     573     588 ..     569     596 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.4
                 TT--EEE- CS
       LRR_4  23 pnLkeLdL 30 
                 p+L++L +
  CCE29506.1 232 PSLEYLEI 239
                 55555553 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.02
                 --E-S-HHH-TT--EEE-.- CS
       LRR_4  13 ltdiplleklpnLkeLdLsg 32 
                 ++ ip+   +pnLk+L + +
  CCE29506.1 307 VSAIPS---IPNLKTLRIGH 323
                 556666...*******9955 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.69
                 HHH.-TT--EEE CS
       LRR_4  19 lek.lpnLkeLd 29 
                 l+  +pnL++L 
  CCE29506.1 380 LAMaFPNLEQLC 391
                 44449****995 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.9
                 ---GGG CS
       LRR_4  36 itdlde 41 
                 itd+++
  CCE29506.1 426 ITDIEP 431
                 444433 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 6
                 S---E-S CS
       LRR_4  11 Nqltdip 17 
                 Nqlt+++
  CCE29506.1 514 NQLTSFD 520
                 5666654 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.3
                 --E-S-HHH-TT--EEE- CS
       LRR_4  13 ltdiplleklpnLkeLdL 30 
                 l+  ++l+++p+ ++L +
  CCE29506.1 533 LKGYEWLRGCPSIQTLGC 550
                 788899*********977 PP

  == domain 7  score: 4.0 bits;  conditional E-value: 0.024
                 -HHH-TT--EEE-.-S CS
       LRR_4  18 lleklpnLkeLdLsgN 33 
                 +l+ +pnL++L++ ++
  CCE29506.1 573 FLATFPNLRTLHIEHF 588
                 36679*******9664 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   3.4e-05       0.1       8      49 ..      95     133 ..      93     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.4e-05
      TPR_16   8 lragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                  + g+ d A+  +e++l+++   P+ ++ +l lg++a r+ +
  CCE29506.1  95 EAMGKLDLAEDDAEWLLELA---PRLPDGYLRLGNIARRNEN 133
                 5789****************...99999*********99854 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   0.00018      0.53       2      42 ..      85     125 ..      84     127 .. 0.93
   2 ?   -1.2   0.0       1.8   5.2e+03      17      30 ..     500     513 ..     499     516 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 +al a+ + ++a G++d A++ ++++l+laP  ++ +l+l+
  CCE29506.1  85 KALHARSSMYEAMGKLDLAEDDAEWLLELAPRLPDGYLRLG 125
                 5889999******************************9998 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.8
      TPR_14  17 pdeAiallrralal 30 
                 pd+A++ll  a+++
  CCE29506.1 500 PDGARTLLSNAIKA 513
                 89*******99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4545.37
//
Query:       CCE29507.1  [L=656]
Description: uncharacterized protein CPUR_03200 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-10   40.9   2.4    3.1e-10   39.8   1.3    2.3  2  F-box-like  F-box-like
    4.2e-10   39.2   1.0    1.4e-09   37.6   1.0    2.0  1  F-box       F-box domain
  ------ inclusion threshold ------
       0.41   11.1   4.3         45    4.7   0.1    5.4  7  LRR_4       Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   1.3   5.2e-14   3.1e-10       4      46 ..     182     226 ..     179     228 .. 0.90
   2 ?   -2.3   0.0      0.72   4.3e+03       8      14 ..     589     595 ..     587     605 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 5.2e-14
  F-box-like   4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtp..lLWrrlv 46 
                 LP+Ei  +IFsyL++ +Ll + +VC++W++   ++p  +LWr++v
  CCE29507.1 182 LPPEIVTHIFSYLDFVQLLVCLRVCKKWNSTLTRPPhcQLWRNMV 226
                 9*******************************7775448999886 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.72
  F-box-like   8 iLlqIFs 14 
                 +Ll IFs
  CCE29507.1 589 LLLAIFS 595
                 89****9 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   1.0   2.3e-13   1.4e-09       4      40 ..     180     216 ..     178     224 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 2.3e-13
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwrilidsd 40 
                 + LP+e++ hI+++L+++ ll + rV+k+w++ + ++
  CCE29507.1 180 LLLPPEIVTHIFSYLDFVQLLVCLRVCKKWNSTLTRP 216
                 57******************************99877 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.25   1.5e+03      21      31 ..     257     267 ..     241     287 .. 0.68
   2 ?    4.7   0.1    0.0075        45      19      32 ..     335     346 ..     313     352 .. 0.78
   3 ?   -2.7   0.0       1.5     9e+03      21      29 ..     380     388 ..     374     390 .. 0.67
   4 ?   -2.7   0.1       1.6   9.4e+03      21      30 ..     442     451 ..     436     453 .. 0.65
   5 ?   -1.5   0.0      0.63   3.8e+03      10      18 ..     508     516 ..     502     521 .. 0.72
   6 ?   -2.2   0.0       1.1   6.4e+03      13      30 ..     526     543 ..     523     547 .. 0.85
   7 ?    1.6   0.1     0.069   4.2e+02      18      30 ..     563     575 ..     557     582 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.25
                 H-TT--EEE-. CS
       LRR_4  21 klpnLkeLdLs 31 
                 +l +L+ L+L 
  CCE29507.1 257 SLEHLEILTLD 267
                 26666666664 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0075
                 HHH-TT--EEE-.- CS
       LRR_4  19 leklpnLkeLdLsg 32 
                 + +lpnLk+L + g
  CCE29507.1 335 P-NLPNLKTLRI-G 346
                 3.4*******99.3 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.5
                 H-TT--EEE CS
       LRR_4  21 klpnLkeLd 29 
                  +p+L++L 
  CCE29507.1 380 AFPKLEQLC 388
                 599999994 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.6
                 H-TT--EEE- CS
       LRR_4  21 klpnLkeLdL 30 
                  l +L++++L
  CCE29507.1 442 RLNSLQHISL 451
                 4667777777 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 0.63
                 SS---E-S- CS
       LRR_4  10 nNqltdipl 18 
                 +Nqlt++++
  CCE29507.1 508 SNQLTSFDF 516
                 488888776 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 1.1
                 --E-S-HHH-TT--EEE- CS
       LRR_4  13 ltdiplleklpnLkeLdL 30 
                 l+  ++l++ p+ ++L +
  CCE29507.1 526 LKGYDWLRGSPSIQTLGC 543
                 8889999999***99966 PP

  == domain 7  score: 1.6 bits;  conditional E-value: 0.069
                 -HHH-TT--EEE- CS
       LRR_4  18 lleklpnLkeLdL 30 
                 +l+ +pnL++L +
  CCE29507.1 563 FLATFPNLRTLRI 575
                 36679*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 5001.66
//
Query:       CCE29508.1  [L=679]
Description: uncharacterized protein CPUR_03201 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-10   38.5   0.4    1.6e-09   37.4   0.4    1.6  1  F-box       F-box domain
      2e-09   37.2   0.4    4.3e-09   36.1   0.4    1.6  1  F-box-like  F-box-like
     0.0032   18.2   0.5      0.041   14.7   0.6    2.9  2  TPR_14      Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.51   10.7   2.4        1.4    9.2   0.2    2.6  2  TPR_12      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.4   3.6e-13   1.6e-09       4      40 ..     178     214 ..     176     221 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 3.6e-13
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwrilidsd 40 
                 + LP+e++ hI+++L++++l  + rV+k+w++ + ++
  CCE29508.1 178 LLLPPEIVTHIFSYLDFVELPVCLRVCKKWKNTLTGP 214
                 57******************************99886 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.4   9.7e-13   4.3e-09       4      46 ..     180     224 ..     177     226 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 9.7e-13
  F-box-like   4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrva...ldtplLWrrlv 46 
                 LP+Ei  +IFsyL++ +L  + +VC++W++     l++ +LWr++ 
  CCE29508.1 180 LPPEIVTHIFSYLDFVELPVCLRVCKKWKNTLtgpLHC-QLWRNMM 224
                 9****************************999888888.9999875 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.6   9.1e-06     0.041       2      43 ..      84     125 ..      83     151 .. 0.96
   2 ?   -1.3   0.0       1.3   5.7e+03      17      30 ..     516     529 ..     515     531 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.1e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +al al + ++a G++d A+ +++++l+laP  ++ +l+l++
  CCE29508.1  84 KALHALSSMHEAMGELDLAEVYAEWMLELAPRLPDGYLRLGD 125
                 58899**********************************986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
      TPR_14  17 pdeAiallrralal 30 
                 pd+A++ll  a+++
  CCE29508.1 516 PDGARTLLSNAIKA 529
                 89*******99986 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00032       1.4      35      76 ..      73     114 ..      49     115 .. 0.85
   2 ?   -0.1   0.2      0.26   1.2e+03      49      77 .]     121     149 ..     119     149 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00032
      TPR_12  35 rllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +  ++++ + + +l++L+ +++a+g+++ A+ + e  l++a+
  CCE29508.1  73 KFENCYNMQHIKALHALSSMHEAMGELDLAEVYAEWMLELAP 114
                 556778888999**********************99999875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.26
      TPR_12  49 rnLgrlyralgryeeAlelleealaiaek 77 
                   Lg+  r+ g+ e A++l++  l+++++
  CCE29508.1 121 LRLGDFARRDGNDEYAWNLYTAGLELYKE 149
                 56777888888888899999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4759.49
//
Query:       CCE29509.1  [L=687]
Description: uncharacterized protein CPUR_03202 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-09   36.0   1.2    9.7e-09   35.0   0.5    2.0  2  F-box-like  F-box-like
    4.9e-09   35.8   0.4    1.2e-08   34.6   0.4    1.7  1  F-box       F-box domain
    0.00084   20.0   0.4     0.0062   17.3   0.8    2.4  2  TPR_14      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.031   13.2   0.0      0.045   12.7   0.0    1.1  1  DUF4784     Domain of unknown function (DUF4784)
      0.082   13.2   0.9       0.18   12.1   0.1    2.0  2  TPR_12      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.5   2.7e-12   9.7e-09       4      46 ..     180     224 ..     177     226 .. 0.91
   2 ?   -2.6   0.0       1.5   5.2e+03       8      15 ..     620     629 ..     618     651 .. 0.54

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 2.7e-12
  F-box-like   4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrva...ldtplLWrrlv 46 
                 LP+Ei  +IFsyL++ +L  + +VC++W +     l++ +LWr++ 
  CCE29509.1 180 LPPEIVTHIFSYLDFVELPVCLRVCKKWENTLtgpLHC-QLWRNMM 224
                 9***************************9999788888.9999875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
  F-box-like   8 iLlqIFs..y 15 
                 +Ll I+s  +
  CCE29509.1 620 VLLAILSvtH 629
                 7899996332 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.4   3.3e-12   1.2e-08       4      40 ..     178     214 ..     176     221 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 3.3e-12
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwrilidsd 40 
                 + LP+e++ hI+++L++++l  + rV+k+w + + ++
  CCE29509.1 178 LLLPPEIVTHIFSYLDFVELPVCLRVCKKWENTLTGP 214
                 57****************************9998876 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.8   1.7e-06    0.0062       2      43 ..      84     125 ..      83     126 .. 0.94
   2 ?   -3.2   0.0         5   1.8e+04      17      30 ..     521     534 ..     520     535 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.7e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +al al + ++a G++d A+a+++++l+laP  ++ +l+l++
  CCE29509.1  84 KALHALSSMHEAMGELDLAEAYAEWMLELAPRLPDGYLRLGD 125
                 58899**********************************986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5
      TPR_14  17 pdeAiallrralal 30 
                 pd+A +ll  a+++
  CCE29509.1 521 PDGAKTLLSNAIKA 534
                 899*****999986 PP

>> DUF4784  Domain of unknown function (DUF4784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05     0.045     277     374 ..     517     625 ..     510     654 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
     DUF4784 277 lnlrnakegvyvgepieAdalIPFwiveassdaptakyvk.agGYivskag.........ktelrLlnpeaes.lgeplatvpnaavsvatllskdldk 364
                 l ++++ ++  + ++i+A+ lI F iv ++s  ++    +   GY   +++         k +l  + +++e  l + lat+pn   +++t  s+ +  
  CCE29509.1 517 LCMSPDGAKTLLSNAIKANQLISFDIVFPDSFDGNCNSDRhLKGYDWLRGSpsiqtmgcyKYSLLYYKKDNELlLPQFLATFPNLRTLSITHFSNCKSP 615
                 567788899999******************9888766554156****99977788887666666666666666899***************99988776 PP

     DUF4784 365 lkiyvlfdvs 374
                   + vl++  
  CCE29509.1 616 ELVRVLLAIL 625
                 6777776644 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.9e-05      0.18      37      76 ..      75     114 ..      59     115 .. 0.88
   2 ?   -3.0   0.1       2.6   9.2e+03      51      76 ..     123     148 ..     120     149 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.9e-05
      TPR_12  37 lGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  ++++   + +l++L+ +++a+g+++ A+++ e  l++a+
  CCE29509.1  75 ENCYNMKHIKALHALSSMHEAMGELDLAEAYAEWMLELAP 114
                 5677778899***********************9999875 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.6
      TPR_12  51 LgrlyralgryeeAlelleealaiae 76 
                 Lg+  r+ g+ e  ++l++  l++++
  CCE29509.1 123 LGDFARRDGNDEYSWNLYTAGLELYK 148
                 55555555555555566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 5156.92
//
Query:       CCE29510.1  [L=639]
Description: uncharacterized protein CPUR_03203 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-07   28.7   2.0    2.2e-06   27.5   2.0    1.7  1  F-box-like       F-box-like
    0.00013   21.7   1.4    0.00013   21.7   1.4    2.5  2  F-box            F-box domain
  ------ inclusion threshold ------
       0.28   11.7  13.3         34    5.1   0.0    6.7  7  LRR_4            Leucine Rich repeats (2 copies)
        0.3   11.9   1.4        0.9   10.3   1.0    2.1  2  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   2.0   4.8e-10   2.2e-06       3      45 ..      34      78 ..      32      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 4.8e-10
  F-box-like  3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrl 45
                 LP E L + FsyL+  dLl + +VC++W+    ++  + LWr++
  CCE29510.1 34 CLPAETLTHLFSYLESMDLLICVRVCKQWKHTLTSPlcRHLWRNM 78
                6*************999************9998666557888876 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   1.4     3e-08   0.00013       5      40 ..      34      69 ..      33      75 .. 0.92
   2 ?    0.3   0.6      0.16   7.1e+02      32      46 ..     385     399 ..     384     401 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3e-08
                HS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box  5 rLPsevlrhILerLplsdllalrrVSkgwrilidsd 40
                +LP e l h +++L+ +dll + rV+k w+  + s+
  CCE29510.1 34 CLPAETLTHLFSYLESMDLLICVRVCKQWKHTLTSP 69
                6999**************************998876 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.16
                 HHHHHHTTHHHHHHH CS
       F-box  32 gwrilidsdrlwcks 46 
                 +wr+ ++++ +++k 
  CCE29510.1 385 SWRDKWKDIWPHLKV 399
                 7***********986 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.17   7.8e+02      23      30 ..     133     140 ..     124     165 .. 0.54
   2 ?    5.1   0.0    0.0075        34       3      32 ..     189     220 ..     187     225 .. 0.60
   3 ?    1.9   0.0     0.072   3.2e+02      21      30 ..     362     371 ..     352     379 .. 0.79
   4 ?    3.3   0.4     0.026   1.2e+02      12      30 ..     417     434 ..     414     438 .. 0.84
   5 ?   -2.4   0.0       1.6   7.3e+03      10      17 ..     493     500 ..     487     503 .. 0.65
   6 ?    2.3   0.1     0.055   2.4e+02      18      30 ..     549     562 ..     538     568 .. 0.82
   7 ?   -2.2   0.0       1.5   6.7e+03      23      33 ..     586     594 ..     578     599 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.17
                 TT--EEE- CS
       LRR_4  23 pnLkeLdL 30 
                  +L++L L
  CCE29510.1 133 EHLEVLEL 140
                 44444444 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0075
                 --EEE--SS-...--E-S-.HHH-TT--EEE-.- CS
       LRR_4   3 LevLdLsnNq...ltdipl.leklpnLkeLdLsg 32 
                 Le+L L +      + +p+ +  lpnLk+L + g
  CCE29510.1 189 LEHLELVGIPlqwFSGLPGlPI-LPNLKTLRM-G 220
                 6666666644111233444344.*******99.3 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.072
                 H-TT--EEE- CS
       LRR_4  21 klpnLkeLdL 30 
                  +pnL++L++
  CCE29510.1 362 AFPNLEQLWI 371
                 59******99 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.026
                 ---E-S-HHH-TT--EEE- CS
       LRR_4  12 qltdiplleklpnLkeLdL 30 
                 +lt ++ll +l++L+++ L
  CCE29510.1 417 RLT-LQLLTNLKSLQHIFL 434
                 677.999999*****9988 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 1.6
                 SS---E-S CS
       LRR_4  10 nNqltdip 17 
                 +Nqlt+++
  CCE29510.1 493 SNQLTSFD 500
                 46777765 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.055
                 -.HHH-TT--EEE- CS
       LRR_4  18 l.leklpnLkeLdL 30 
                 + l+ +pnL++L++
  CCE29510.1 549 PfLATFPNLQTLTI 562
                 43667*******87 PP

  == domain 7  score: -2.2 bits;  conditional E-value: 1.5
                 TT--EEE-.-S CS
       LRR_4  23 pnLkeLdLsgN 33 
                 ++Lk++++  N
  CCE29510.1 586 THLKTINI--N 594
                 78999998..3 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         4   1.8e+04      65      77 ..      48      60 ..      30      65 .. 0.70
   2 ?   10.3   1.0    0.0002       0.9      27      61 ..     269     303 ..     255     321 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4
  Methyltransf_12 65 ssfDlvvasnvlh 77
                     +s Dl ++  v+ 
       CCE29510.1 48 ESMDLLICVRVCK 60
                     6889999988876 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0002
  Methyltransf_12  27 Dispsaiedakeklakrennnnnnvelealdlldl 61 
                       +s+++i+da++k a+++ ++n+n+e+e+++++++
       CCE29510.1 269 HYSRQMIKDAQRKEAQKKYDQNKNNENEEDEIDED 303
                      689****************9999999998886543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1108  (0.0617993); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 4351.33
//
Query:       CCE29511.1  [L=716]
Description: uncharacterized protein CPUR_03204 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-08   31.9   5.1    4.3e-07   29.7   5.1    2.3  1  F-box-like  F-box-like
    1.8e-06   27.7   1.7    5.3e-06   26.2   1.7    1.8  1  F-box       F-box domain
    5.3e-05   22.9   2.2      0.014   15.2   0.0    3.5  3  TPR_1       Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.62   10.3   3.7         57    4.2   0.1    3.4  3  TPR_2       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   5.1   9.6e-11   4.3e-07       3      47 ..     178     224 ..     176     225 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 9.6e-11
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrva...ldtplLWrrlvl 47 
                  LP Ei  qIFsyL++s    + +VCr Wrr      ++ +LWr++++
  CCE29511.1 178 CLPAEIVTQIFSYLELSRRFVCLRVCREWRRTLtspIHC-QLWRTMTI 224
                 6******************************99444345.9***9875 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   1.7   1.2e-09   5.3e-06       4      40 ..     177     213 ..     175     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.2e-09
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwrilidsd 40 
                 ++LP e++ +I+++L+ls ++ + rV++ wr+ + s+
  CCE29511.1 177 LCLPAEIVTQIFSYLELSRRFVCLRVCREWRRTLTSP 213
                 79*****************************998875 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.033   1.5e+02      13      32 ..      13      32 ..      12      32 .. 0.89
   2 !   15.2   0.0   3.1e-06     0.014       2      33 ..      83     114 ..      82     115 .. 0.95
   3 ?    2.9   0.1     0.024   1.1e+02       2      18 ..     117     133 ..     116     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.033
                HTT-HHHHHHHHHHHHHHST CS
       TPR_1 13 klgkydeAleyyekALelnP 32
                  +ky  A + + +A+ ++P
  CCE29511.1 13 LAKKYSRASALFTRAICICP 32
                569*************9988 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 3.1e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 +al+ ++++y  lgk+d A+ + e  Lel P+
  CCE29511.1  83 QALNSRAATYGALGKLDLAVRDAEWMLELAPH 114
                 79****************************97 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHHTT-HH CS
       TPR_1   2 kalynlGnayfklgkyd 18 
                 + + +lGn+ + +++ +
  CCE29511.1 117 DGYLRLGNIARLQKNDE 133
                 789**********9865 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.018        79       5      28 ..       5      28 ..       2      32 .. 0.88
   2 ?    4.2   0.1     0.013        57       3      33 ..      84     114 ..      82     115 .. 0.89
   3 ?    1.6   0.1     0.083   3.7e+02       2      20 ..     117     135 ..     116     148 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.018
       TPR_2  5 ynlGlayyklgdyeeAleafekAl 28
                 + G+  y +++y +A ++f +A+
  CCE29511.1  5 IQAGRHSYLAKKYSRASALFTRAI 28
                567889999*************98 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.013
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 al+ ++  y +lg+++ A+++ e  lel+P+
  CCE29511.1  84 ALNSRAATYGALGKLDLAVRDAEWMLELAPH 114
                 8999****************99988888885 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.083
       TPR_2   2 ealynlGlayyklgdyeeA 20 
                 +++ +lG++++ +++ e A
  CCE29511.1 117 DGYLRLGNIARLQKNDEYA 135
                 7899*********998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 5736.26
//
Query:       CCE29512.1  [L=758]
Description: uncharacterized protein CPUR_03205 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-06   26.7   3.8    1.9e-05   24.4   0.5    2.6  2  F-box-like  F-box-like
    0.00089   19.1   0.2    0.00089   19.1   0.2    2.6  2  F-box       F-box domain
     0.0018   18.9   0.1      0.014   16.1   0.2    2.6  2  TPR_14      Tetratricopeptide repeat
     0.0059   16.4   0.1     0.0059   16.4   0.1    2.8  3  TPR_1       Tetratricopeptide repeat
     0.0062   17.2   1.7      0.011   16.3   0.5    2.1  2  TPR_16      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.8   0.9      0.082   13.2   0.1    2.6  2  TPR_8       Tetratricopeptide repeat
       0.16   12.2   0.2       0.16   12.2   0.2    2.9  3  TPR_2       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2     0.054   1.4e+02      25      43 ..      55      73 ..      43      76 .. 0.83
   2 !   24.4   0.5   7.5e-09   1.9e-05       4      47 ..     193     238 ..     191     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.054
  F-box-like 25 alVCrrWrrvaldtplLWr 43
                +++C+++ rva+  +++ r
  CCE29512.1 55 RCTCKDFERVAAEGRSIFR 73
                589********98877766 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 7.5e-09
  F-box-like   4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrlvl 47 
                 LP+    + FsyL+p dLl + +VC+ W+r   ++  + LWr++++
  CCE29512.1 193 LPTAFVTHMFSYLEPMDLLVCVRVCKEWKRTLTSPpyRHLWRNMTF 238
                 888888899***********************99945579998876 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   3.5e-07   0.00089      11      41 ..     198     228 ..     191     233 .. 0.83
   2 ?   -0.7   0.9      0.53   1.4e+03      32      46 ..     503     517 ..     503     519 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.5e-07
                 HHHHHHTS-HHHHHHHCTT-HHHHHHHTTHH CS
       F-box  11 lrhILerLplsdllalrrVSkgwrilidsdr 41 
                 + h +++L+++dll + rV+k w++ + s+ 
  CCE29512.1 198 VTHMFSYLEPMDLLVCVRVCKEWKRTLTSPP 228
                 55559********************998875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.53
                 HHHHHHTTHHHHHHH CS
       F-box  32 gwrilidsdrlwcks 46 
                 +wr+ ++++ +++k 
  CCE29512.1 503 SWRDKWKDIWPHLKV 517
                 7***********986 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   5.6e-06     0.014       4      43 ..      99     138 ..      96     139 .. 0.92
   2 ?   -1.7   0.0         3   7.6e+03      17      29 ..     596     608 ..     595     625 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.6e-06
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 l  +a++++ lG++d+A + ++++l+laP  ++ +l+l++
  CCE29512.1  99 LNSRARIYEDLGKLDRAKKDAEWMLELAPRLPDGYLRLGK 138
                 5669**********************************98 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3
      TPR_14  17 pdeAiallrrala 29 
                 pd+A+++l  a++
  CCE29512.1 596 PDGARTMLSNAIK 608
                 899*****99987 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   2.3e-06    0.0059       2      33 ..      97     128 ..      96     129 .. 0.95
   2 ?    1.0   0.2      0.17   4.3e+02       2      28 ..     131     157 ..     130     162 .. 0.77
   3 ?   -2.2   0.1       1.7   4.4e+03      13      20 ..     410     417 ..     409     419 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.3e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 kal+ ++ +y  lgk+d A ++ e  Lel P 
  CCE29512.1  97 KALNSRARIYEDLGKLDRAKKDAEWMLELAPR 128
                 89***************************995 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekAL 28 
                 + + +lG + + +++ + A + y   +
  CCE29512.1 131 DGYLRLGKIARLQKNDEYAWKMYTAGI 157
                 789***********9887766665555 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.7
                 HTT-HHHH CS
       TPR_1  13 klgkydeA 20 
                   ++ydeA
  CCE29512.1 410 LENDYDEA 417
                 5689**99 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.5   4.4e-06     0.011       3      49 ..     102     145 ..     100     149 .. 0.93
   2 ?   -2.3   0.0       2.9   7.5e+03      18      32 ..     416     430 ..     413     433 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.4e-06
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                 +ar++ ++g+ d+A + +e+ l+++   P+ ++ +l lg +a  q++
  CCE29512.1 102 RARIYEDLGKLDRAKKDAEWMLELA---PRLPDGYLRLGKIARLQKN 145
                 79***********************...99999*********98876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.9
      TPR_16  18 aaleaalkrdpssPd 32 
                 +a+++a+ +++++P 
  CCE29512.1 416 EAYNEAVHDWYDDPN 430
                 689999999998886 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.2e-05     0.082       2      31 ..      97     126 ..      96     128 .. 0.84
   2 ?    0.1   0.1      0.49   1.2e+03       3      31 ..     132     160 ..     130     163 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleld 31 
                 +a++  ++iy++lg+++ Ak+  e  lel+
  CCE29512.1  97 KALNSRARIYEDLGKLDRAKKDAEWMLELA 126
                 78999****************987666655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.49
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleld 31 
                  y++lg+i + +++ e A + y   +e++
  CCE29512.1 132 GYLRLGKIARLQKNDEYAWKMYTAGIEAN 160
                 699******77777776666666666666 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   6.1e-05      0.16       2      32 ..      97     127 ..      96     129 .. 0.90
   2 ?    0.3   0.1      0.38   9.7e+02       2      20 ..     131     149 ..     130     162 .. 0.77
   3 ?   -2.7   0.1       3.4   8.8e+03      14      21 ..     411     418 ..     409     420 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.1e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                 +al+ ++++y+ lg++++A+++ e  lel+P
  CCE29512.1  97 KALNSRARIYEDLGKLDRAKKDAEWMLELAP 127
                 6999******************998888888 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.38
       TPR_2   2 ealynlGlayyklgdyeeA 20 
                 +++ +lG++++ +++ e A
  CCE29512.1 131 DGYLRLGKIARLQKNDEYA 149
                 6899*********998866 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.4
       TPR_2  14 lgdyeeAl 21 
                  +dy+eA 
  CCE29512.1 411 ENDYDEAY 418
                 68999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1158  (0.0645881); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 5251.05
//
Query:       CCE29513.1  [L=115]
Description: uncharacterized protein CPUR_03206 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 999.30
//
Query:       CCE29514.1  [L=608]
Description: uncharacterized protein CPUR_03361 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.051   12.3   0.1      0.081   11.6   0.1    1.2  1  DUF3723   Protein of unknown function (DUF3723)


Domain annotation for each model (and alignments):
>> DUF3723  Protein of unknown function (DUF3723)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.5e-06     0.081      51     111 ..      30      97 ..      24     111 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.5e-06
     DUF3723  51 qlecLhGkhRlrAaeevlees.....dkwWvVdLYld.diseelrtsLveeysnekkpsD.Geiyrki 111
                  le L G+hR+rA ee+++++     + wW  + Y + +is e   +L+ + +   kp D G+i+ ++
  CCE29514.1  30 PLELLAGQHRIRALEEWVKDAklgeeELWWPCEFYDRdSISLEENMKLRVNNKDVAKPDDhGDIWLHL 97 
                 6889***********9988766776699*******863678777777766555555555548887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 4930.21
//
Query:       CCE29515.1  [L=160]
Description: uncharacterized protein CPUR_03362 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1407.14
//
Query:       CCE29516.1  [L=31]
Description: uncharacterized protein CPUR_03363 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       100  (0.00557756); expected 358.6 (0.02)
Passed bias filter:                       76  (0.00423894); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 253.66
//
Query:       CCE29517.1  [L=255]
Description: uncharacterized protein CPUR_03364 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-09   36.3   0.0    5.9e-09   35.8   0.0    1.2  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   3.3e-13   5.9e-09       2     144 ..     159     249 ..     158     251 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.3e-13
                 E-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   2 pKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                 +K+g g+ R  +     dy+ ln+++++           +++p +r+              l++ +k   ++klD++ aF++ ++++  + +taf+++ 
  CCE29517.1 159 RKPG-GGLRFcV-----DYRGLNAITSN---------NRYPLPLIRET-------------LHELAKVLRYTKLDVRAAFHRMRMAAGKEWKTAFRTH- 228
                 6999.*****55.....***********.........***********.............8899*********************************. PP

                 ........................TEEEEESB--ST-TTHHHHHH CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfn 144
                                         +g++e+ ++p+G++ +P+ fn
  CCE29517.1 229 ------------------------QGSFEWLVCPFGLTGAPAHFN 249
                 ........................9******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2041.04
//
Query:       CCE29518.1  [L=176]
Description: uncharacterized protein CPUR_03365 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-23   80.5   0.0    1.1e-22   79.9   0.0    1.2  1  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
    2.5e-13   50.2   0.0    4.3e-13   49.5   0.0    1.3  1  RT_RNaseH    RNase H-like domain found in reverse transcripta
  ------ inclusion threshold ------
      0.099   12.1   0.0       0.14   11.7   0.0    1.3  1  RVT_1        Reverse transcriptase (RNA-dependent DNA polymer


Domain annotation for each model (and alignments):
>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   1.8e-26   1.1e-22       4      89 ..      52     138 ..      50     143 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 1.8e-26
  RT_RNaseH_2   4 eqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpia.faSrklskaernysttekellAivwalkkf 89 
                  ++e+af+++ke l+ apvLa++dp++++++e D+S +g+g+v sq ++d+ +rpi   +Srkl +ae  y++++kell i+ a+k+f
   CCE29518.1  52 AHETAFDRMKEILICAPVLAIYDPELETVVEADSSGYGLGGVVSQVGHDDLLRPIRlLFSRKLPAAEISYQIHDKELLIIISAIKHF 138
                  699*********************************************999***97369***************************9 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   7.2e-17   4.3e-13       1      64 [.      74     138 ..      74     146 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 7.2e-17
                 -TTS-EEEEEEECTEEEEEEEEEETTE..EEEEEEE.EEE--HHHHTS-HHHHHHHHHHHHHHHH CS
   RT_RNaseH   1 dpskpfiletDAsddgigavLsqreedgeerpiafa.SrklsgaernystiekellAivaalkkf 64 
                 dp+ ++++e D+s +g+g+v+sq  +d+  rpi  + Srkl +ae  y++++kell i+ a+k+f
  CCE29518.1  74 DPELETVVEADSSGYGLGGVVSQVGHDDLLRPIRLLfSRKLPAAEISYQIHDKELLIIISAIKHF 138
                 899******************************8644***************************9 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.3e-05      0.14     169     209 ..       3      44 ..       1      84 [. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.3e-05
                 EEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE... CS
       RVT_1 169 Dililsks.keelqelleaveewlkesglkinpeKtklvlft 209
                 D++i++++ ++++ + ++ v +++  + l+in +K+ + +++
  CCE29518.1   3 DVIIYTDGdEDDHFSKVNLVLSRMLAAVLNINLAKCAFSVTQ 44 
                 99******6666**************************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.44
# Mc/sec: 1200.68
//
Query:       CCE29519.1  [L=537]
Description: related to putidaredoxin reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-49  167.5   4.0    5.1e-49  167.1   4.0    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.8e-14   53.4   0.0    4.9e-14   52.0   0.0    1.8  1  Rieske         Rieske [2Fe-2S] domain
    5.4e-12   46.1   4.0    3.1e-10   40.5   0.4    2.5  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    1.2e-07   31.3   0.3    0.00019   20.8   0.1    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0016   17.7   0.5       0.77    8.8   0.1    2.5  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
     0.0088   16.5   0.6       0.59   10.6   0.0    2.4  2  NAD_binding_7  Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.011   16.2   0.0      0.034   14.7   0.0    1.8  1  Reductase_C    Reductase C-terminal
      0.019   14.9   3.5        5.3    7.0   0.0    3.5  4  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.1   4.0   2.3e-52   5.1e-49       2     294 .]     133     438 ..     132     438 .. 0.91

  Alignments for each domain:
  == domain 1  score: 167.1 bits;  conditional E-value: 2.3e-52
                  SEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEECTCEE CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvaedaeiasevvkklnqg.ielllgeevvkidpgkkkvklekkkegdee 96 
                  +vv++GgG +++ + + l++   g+ +t+++ eg+ + +++ lskal    ++ + + +    +++g +e+l+g ev ++d+  ++v       + ++
   CCE29519.1 133 KVVIVGGGSGAIGVVEGLREngFGGAITVISNEGYYPIDRPKLSKALITDLSKLQLRDKS--WFESGnVEWLNG-EVSAVDFSTHTVST-----KGGQ 222
                  8*******************766*******************************988743..3444549*****.*********99999.....5678 PP

                  EEEESEEEE---EEE-BCTCTTC...TTBEECCSECHHHHHHCCSS-T..SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2  97 kiaydklvlAtGssprdlgipGv..aenvgklvrtldsaealklkllp..krivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaal 189
                  ++ y klvlAtG+++++l++ G    +nv++l r++++++a+  +  +  k+iv+vG+++iG+E+A a ++    vt+v  ++ +l r l+++++a +
   CCE29519.1 223 SVSYAKLVLATGGTAKKLPMSGFrsLKNVFTL-RNVHDVKAIVGAIGEknKKIVIVGSSFIGMEIANATCNE-NTVTIVSTGKVPLeRVLGEKVGAGI 318
                  9**********************988888877.*********88877777*****************96554.45*********************** PP

                  HHHHHHTTEEEEESCEEEEEEETTE...EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBES.STTEEE-GGGC.... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.... RF
  Pyr_redox_2 190 eealekeGvevklgtsvkeidgnge...kle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtn.vpgiyaiGDva.... 278
                  ++ +e++Gv+++lg+ + ++++ ++   k+  v+ledg++i+adlv+++vGv p t++l ++  l l+++g i++de+ +++ v+++ya+GD+a    
   CCE29519.1 319 QASVEAKGVKFHLGAAIDNAEPSTSdpsKVGaVTLEDGTRIEADLVILGVGVAPATDFLRDNPVLRLEKDGSIQTDENFQVTgVKDVYAVGDIAthpy 416
                  **********************9999876668**************************98888889999***********888************999 PP

                  ......TECCSS--HHHHHHHH CS
                  ......xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 279 ......ggkggpelaqaAvqqG 294
                        g   ++e++ +A+++G
   CCE29519.1 417 sgpggqGSLVRIEHWNVAQNSG 438
                  9998888888999999999876 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   2.2e-17   4.9e-14      12      88 ..      16      95 ..       5      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 2.2e-17
                -TTCEEEEEETTEE...EEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEE.TTSBEEE-TTHHHEEEE CS
      Rieske 12 pegdpltvkvggep...lvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwayd.adGkvikgPaprplaty 88
                ++gd ++v+v g +   ++++  + g+v A+   CtH gapl +g + ++g+++Cp+Hg++++  +G+v ++Pa ++l+ +
  CCE29519.1 16 SPGDKKEVEVEGVEggkVLLVH-SAGKVQAIGAKCTHYGAPLVKGVLSSDGRIKCPWHGACFStSNGDVEEAPALDALPVF 95
                4667667766665555477777.5**************************************************9999877 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.2    0.0061        14       1      31 [.     133     165 ..     133     186 .. 0.84
   2 !   40.5   0.4   1.4e-13   3.1e-10       1      80 [.     273     355 ..     273     356 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0061
                 EEEEECSSHHHHHHHHHH..HHTTSEEEEEESS CS
   Pyr_redox   1 kvvvvGgGyiglElAgal..aelgkkVtvvers 31 
                 kvv+vGgG  ++ + + l  + +g  +tv+ ++
  CCE29519.1 133 KVVIVGGGSGAIGVVEGLreNGFGGAITVISNE 165
                 79*****99988888888435588999999876 PP

  == domain 2  score: 40.5 bits;  conditional E-value: 1.4e-13
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEE...EETTSEEEEEEET CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeie...gsedgvesvklkd 80 
                 k+v+vG+++ig+E A+a  + +  Vt+v  ++ +l r+l+e++++ +q ++e++g++++l++ + + e    ++++v +v+l+d
  CCE29519.1 273 KIVIVGSSFIGMEIANATCNEN-TVTIVSTGKVPLeRVLGEKVGAGIQASVEAKGVKFHLGAAIDNAEpstSDPSKVGAVTLED 355
                 79***************99987.9*******************************************96544444577777766 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00064       1.4     162     270 ..     129     238 ..     111     251 .. 0.77
   2 !   20.8   0.1   8.3e-08   0.00019     163     305 .]     270     409 ..     266     409 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00064
  Pyr_redox_3 162 yagqkvvViGgknSavDaAlelvrk..gaeVtvvtrgseiekeesdpsyslkpdien.rleelvke....ekikvlfnaevkeikekeeeykvktedg 252
                   +g+kvv++Gg+  a+ +   l ++  g  +tv+ ++     ++ + s  l  d  + +l++   +    ++++ l   ev +++ +  +++v+t+ g
   CCE29519.1 129 STGEKVVIVGGGSGAIGVVEGLRENgfGGAITVISNEGYYPIDRPKLSKALITDLSKlQLRDK--SwfesGNVEWLNG-EVSAVDFS--THTVSTKGG 221
                  5689**************999999977899******998888888888777766543144332..1344477887666.99999986..557899998 PP

  Pyr_redox_3 253 kkvevkddvvlatGykpd 270
                  ++v ++ + vlatG + +
   CCE29519.1 222 QSV-SYAKLVLATGGTAK 238
                  886.57999*****8865 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 8.3e-08
  Pyr_redox_3 163 agqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeik....ekeeeykvktedgkkve 256
                  +++k+v++G +  ++++A  ++++ ++Vt+v  g+   ++      ++ + i+  +e+      +k++  a +++ +    ++++   v+ edg+++e
   CCE29519.1 270 KNKKIVIVGSSFIGMEIANATCNE-NTVTIVSTGKVPLERV--LGEKVGAGIQASVEAKG----VKFHLGAAIDNAEpstsDPSKVGAVTLEDGTRIE 360
                  5799****************9998.7899999998766654..66677777777777643....44444444444331111445556899****9987 PP

  Pyr_redox_3 257 vkddvvlatGykpdlsflkk.slfeldedgrpvlteeteetnvpglflaG 305
                  + d v+l +G  p ++fl++ +++ l++dg ++ +e+ + t v++++ +G
   CCE29519.1 361 A-DLVILGVGVAPATDFLRDnPVLRLEKDGSIQTDENFQVTGVKDVYAVG 409
                  6.888888***********999*************************998 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0022         5     188     238 ..     128     177 ..     104     183 .. 0.75
   2 !    8.8   0.1   0.00034      0.77     136     215 ..     214     295 ..     196     304 .. 0.68
   3 ?   -2.4   0.0      0.89     2e+03     118     160 ..     334     372 ..     327     374 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0022
  K_oxygenase 188 llakkriaVvGsGqSaaeifedllrrqkkvelklvtrsealeplddspfvn 238
                    +++++++vG+G  a  ++e l ++     ++++ ++e++ p+d  ++ +
   CCE29519.1 128 VSTGEKVVIVGGGSGAIGVVEGLRENGFGGAITVI-SNEGYYPIDRPKLSK 177
                  67899******************999776777755.566777777777655 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00034
  K_oxygenase 136 eskdaegeeeelearnlvlgvG.tepkiPev.leklegkervvHsseylerkee....llakkriaVvGsGqSaaeifedllrrqk 215
                  ++ +++g  ++++  +lvl++G t  k+P   +++l++   v+   ++   k+      +++k+i++vGs   + ei++   ++++
   CCE29519.1 214 HTVSTKG-GQSVSYAKLVLATGgTAKKLPMSgFRSLKN---VFTLRNVHDVKAIvgaiGEKNKKIVIVGSSFIGMEIANATCNENT 295
                  3322344.5677777899999956789**764777774...444444444443344568999***************998877654 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.89
  K_oxygenase 118 eveevepdeeeeeelltveskdaegeeeelearnlvlgvGtep 160
                  ++++ ep++++ +++  v+     ++ +++ea  ++lgvG  p
   CCE29519.1 334 AIDNAEPSTSDPSKVGAVTL----EDGTRIEADLVILGVGVAP 372
                  55555666655444444444....3567889999999999887 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00026      0.59       6      46 ..     130     182 ..     129     238 .. 0.72
   2 ?    3.8   0.1     0.035        79       6      40 ..     270     303 ..     266     363 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00026
  NAD_binding_7   6 kgkkvlvvGgGevAarkvrklleag..akvtvvapevkeele..........e 46 
                    +g+kv++vGgG+ A   v+ l e+g    +tv+++e  + ++          +
     CCE29519.1 130 TGEKVVIVGGGSGAIGVVEGLRENGfgGAITVISNEGYYPIDrpklskalitD 182
                    689********************775589******985555555444444442 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.035
  NAD_binding_7   6 kgkkvlvvGgGevAarkvrklleagakvtvvapev 40 
                    k+kk+++vG   ++++ ++  +++  +vt+v+   
     CCE29519.1 270 KNKKIVIVGSSFIGMEIANATCNE-NTVTIVSTGK 303
                    689999****99999999999998.8999999873 PP

>> Reductase_C  Reductase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.5e-05     0.034       2      48 ..     459     505 ..     458     512 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
                  EEEEETTEEEEEEE-.-TT--EEEEEEETTTTEEEEEEEETTEEEEEE CS
  Reductase_C   2 fWSDqydlklQiaGl.atgadevvvRgdpeerafsvfylrdgrlvave 48 
                  fWS   + +l+++G  ++g+d+v++ gdp+e++f+++y++++++va++
   CCE29519.1 459 FWSA-LGAQLRYCGNiSNGWDDVLIQGDPAEANFVAYYTKGETVVAMA 505
                  7775.56899****75889**************************975 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.3      0.11   2.5e+02       1      30 [.     135     161 ..     135     181 .. 0.82
   2 ?    5.0   0.0    0.0096        21     116     155 ..     198     235 ..     186     236 .. 0.85
   3 ?    7.0   0.0    0.0024       5.3     129     154 ..     343     369 ..     313     371 .. 0.69
   4 ?   -3.1   0.0       3.1   6.9e+03      11      36 ..     423     451 ..     418     456 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.11
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitl 30 
                    +ivG+G  ++ v+e L ++   +    it+
     CCE29519.1 135 VIVGGGSGAIGVVEGLREN---GFGGAITV 161
                    7*************99888...45555555 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0096
  NAD_binding_9 116 tvevhraevvdleeradgqavlladgaslaadaVvLAlGh 155
                    +ve +++ev +++ +  +  v +++g+s+ + ++vLA+G 
     CCE29519.1 198 NVEWLNGEVSAVDFSTHT--VSTKGGQSVSYAKLVLATGG 235
                    688889999999988765..899***************95 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0024
  NAD_binding_9 129 eradgq.avlladgaslaadaVvLAlG 154
                     +++++ av+l+dg++++ad V+L +G
     CCE29519.1 343 SDPSKVgAVTLEDGTRIEADLVILGVG 369
                    34445558****************999 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 3.1
  NAD_binding_9  11 avlerLlara...kkkspleitlfdpsep 36 
                      l r+ +++   ++++++  +++dps+ 
     CCE29519.1 423 GSLVRIEHWNvaqNSGRHVAAHIIDPSKK 451
                    55555555555545677888888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4071.39
//
Query:       CCE29520.1  [L=661]
Description: uncharacterized protein CPUR_03367 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0047   17.0  22.7        5.4    7.1  21.2    3.3  2  DivIVA        DivIVA protein
  ------ inclusion threshold ------
       0.12   12.5   9.0      0.059   13.5   6.4    1.8  2  Flagellin_N   Bacterial flagellin N-terminal helical region
       0.14   12.0   6.4       0.34   10.8   6.4    1.7  1  LemA          LemA family
        0.2   10.5   9.9       0.29   10.0   9.9    1.4  1  LMBR1         LMBR1-like membrane protein
       0.23   10.8  32.8        2.1    7.6  17.7    3.3  2  Tropomyosin   Tropomyosin
       0.45    8.8  16.0       0.86    7.9  16.0    1.4  1  Sec3_C        Exocyst complex component Sec3
        1.3    9.5  40.5       0.47   11.0  20.6    3.3  3  APG6_N        Apg6 coiled-coil region
        1.5    6.9  23.5        2.3    6.3   1.9    2.1  2  EzrA          Septation ring formation regulator, EzrA
        1.6    6.5  10.3        2.3    6.0  10.3    1.4  1  V_ATPase_I    V-type ATPase 116kDa subunit family
        1.9    7.9  28.4        1.7    8.0   6.5    2.5  2  HMMR_N        Hyaluronan mediated motility receptor N-termina
          4    5.8   5.9        1.9    6.8   3.4    1.5  1  FHIPEP        FHIPEP family
          6    7.2   7.0        6.7    7.0   1.4    3.3  4  DUF948        Bacterial protein of unknown function (DUF948)
          8    6.3  15.6        2.2    8.1   7.5    2.5  2  Phage_GP20    Phage minor structural protein GP20


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1  21.2    0.0039       5.4      36     130 ..      31     144 ..      24     161 .. 0.89
   2 ?    5.7   0.0     0.011        15      34      73 ..     191     230 ..     185     240 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0039
                 HHHHHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX.................XXXXXXXXXXXX CS
      DivIVA  36 allkeneelkekvkeleeklkeykeleetLkktlvvaqetaeevkanakk..eaeliikeAekkaekive.................eaeeeakkiaee 115
                 + ++en+ l e++++l+++l++ +   ++L+ +l++aq++  ++ a+a++   ae  +++ e++ +k++                  ea++e+ +++++
  CCE29520.1  31 NTVEENRGLLEQLEALNHSLSDSDVKIKNLESSLLSAQQAVRRLEAAANRaqDAERHLAALEEETDKLLTelraskedhrtqiqrykEAQRELMDMQDQ 129
                 6789***************************************9999987225777888888999999999****************999999999999 PP

                 XXXXXXXXXXXXXXX CS
      DivIVA 116 ieelkrqarlfrqrl 130
                 +e+++ +ar+ rq++
  CCE29520.1 130 LERIEIEARQERQHY 144
                 999999999998876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXX CS
      DivIVA  34 yeallkeneelkekvkeleeklkeykeleetLkktlvvaq 73 
                 +++ll+en++l+  ++e++e l++ ++  ++L++ l+  q
  CCE29520.1 191 VRDLLQENANLQLGIREMRELLMNSNDEIQSLRDELMPHQ 230
                 6789******************************998766 PP

>> Flagellin_N  Bacterial flagellin N-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   6.4   4.3e-05     0.059      49     123 ..      59     134 ..      55     142 .. 0.92
   2 ?   -3.2   0.0       6.1   8.4e+03     109     119 ..     216     226 ..     204     227 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.3e-05
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHT-TTTS-SHHHHHHHHHHHHHHHHHHHH CS
  Flagellin_N  49 slrsqiaglsqlvrnnslgisrlqtaqgalselsdilqr.lkelavaasndsnsdedrqslqaelqqLtdelnria 123
                  +l+s +   +q+vr  + +++r+q a+  l  l++ +++ l el + + +++++ +  +++q+el ++ d+l+ri 
   CCE29520.1  59 NLESSLLSAQQAVRRLEAAANRAQDAERHLAALEEETDKlLTELRASKEDHRTQIQRYKEAQRELMDMQDQLERIE 134
                  5778888899*****************************9999999999999988899***************996 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.1
                  HHHHHHHHHHH CS
  Flagellin_N 109 qaelqqLtdel 119
                  ++e+q+L+del
   CCE29520.1 216 NDEIQSLRDEL 226
                  45566666655 PP

>> LemA  LemA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   6.4   0.00025      0.34      36     114 ..      70     154 ..      44     181 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00025
        LemA  36 evteaRakaaeaesve.ekaeaenqlssalsrllavaEnYPd.Lk....anenfleLqeelegtEnriavaRrrYneavreyntk 114
                 +v ++ a+a+ a++ e + a+ e++ ++ l +l a  E+    ++    a+++++++q++le++E +   +R++Y e+v++++ +
  CCE29520.1  70 AVRRLEAAANRAQDAErHLAALEEETDKLLTELRASKEDHRTqIQrykeAQRELMDMQDQLERIEIEARQERQHYAETVERLERQ 154
                 33344444555555441556778899999999999999876424333348999***************************98766 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   9.9   0.00021      0.29     195     323 ..       8     142 ..       4     299 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00021
       LMBR1 195 ksdldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklks...nenkteeslaklekqlikalqkrert 290
                 + dl+e++++l+++  +l+ e +++ +e + ll+++++l+ s+s+sd   k+le  l +  + ++  l++     +++e++la le+++ k l++ + +
  CCE29520.1   8 RLDLNERIERLEMDKHNLEIENANTVEENRGLLEQLEALNHSLSDSDVKIKNLESSLLSAQQAVRR-LEAaanRAQDAERHLAALEEETDKLLTELRAS 105
                 56899******************************************8668887777644443333.23356555668888999888888886666666 PP

       LMBR1 291 ekqwkrlleka....lelediiknksskekefksses 323
                 ++  ++ ++++     el d+ ++ + +e e +++ +
  CCE29520.1 106 KEDHRTQIQRYkeaqRELMDMQDQLERIEIEARQERQ 142
                 6666665555511113333444444444444443333 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  17.7    0.0015       2.1     134     220 ..      13     109 ..       2     114 .. 0.58
   2 ?    6.8   7.4    0.0028       3.9     188     229 ..     112     153 ..     109     160 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0015
  Tropomyosin 134 eraeaaeskiveLeeeLkvvgnnlksLevseekaseredeyeeeirtLe..........ekLkeaeeRaeeAErsvqkLekevdrledeleaekeky 220
                  er+e+ e+  ++Le e  ++ ++ + L  + e+ ++   +   +i++Le           +L +a +Ra++AEr+++ Le+e d+l  el+a ke  
   CCE29520.1  13 ERIERLEMDKHNLEIENANTVEENRGLLEQLEALNHSLSDSDVKIKNLEssllsaqqavRRLEAAANRAQDAERHLAALEEETDKLLTELRASKEDH 109
                  4555555555555533333333333333333333333333333333333111111112258999******************************975 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0028
  Tropomyosin 188 aeeRaeeAErsvqkLekevdrledeleaekekykaiseeLdq 229
                   ++R+ eA r+++ ++ +++r+e e ++e+++y +  e L++
   CCE29520.1 112 QIQRYKEAQRELMDMQDQLERIEIEARQERQHYAETVERLER 153
                  679********************************9999975 PP

>> Sec3_C  Exocyst complex component Sec3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  16.0   0.00062      0.86      62     176 ..      10     131 ..       3     163 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00062
      Sec3_C  62 tlsedieyIEsqnngLQvksaN....qklLykeLeellstvslsesdleaLkeaelssanglealeealeaLfkAltaIdsdlkdlesdlgemravke. 155
                 +l+e ie+ E +++ L++++aN    ++ L+++Le l  ++s s+ +++ L++  ls ++ +++le+a+++ ++A     +  ++ ++ l e+ra ke 
  CCE29520.1  10 DLNERIERLEMDKHNLEIENANtveeNRGLLEQLEALNHSLSDSDVKIKNLESSLLSAQQAVRRLEAAANRAQDAERHLAALEEETDKLLTELRASKEd 108
                 6899******************5555578*************************************************999999***********9984 PP

      Sec3_C 156 ...rrerYekvsssFlrrlvefle 176
                    + +rY++ ++++++ ++++le
  CCE29520.1 109 hrtQIQRYKEAQRELMD-MQDQLE 131
                 33334677777777765.333333 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   7.0     0.044        61      72     128 ..       3      59 ..       1      64 [. 0.83
   2 ?   11.0  20.6   0.00034      0.47      32     132 ..      40     143 ..      37     144 .. 0.80
   3 ?    7.1   3.8    0.0055       7.6      20      91 ..     136     226 ..     135     231 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.044
      APG6_N  72 elekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqyeh 128
                 ++e+er +l++ ++ le  + +le e+++ ++e + l  +l+ l+  l   +++++ 
  CCE29520.1   3 DAERERLDLNERIERLEMDKHNLEIENANTVEENRGLLEQLEALNHSLSDSDVKIKN 59 
                 689999999999999999999999999999999999999999988888877777665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00034
      APG6_N  32 lkklkkekkeeekqdeeleeleee...leklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqye 127
                 l++l++ + + +++d ++++le +    ++  +  e++ +  +++e++ ++le+e  +l  el+a +e+ +  +++y+e q+el++++++l+ +e + +
  CCE29520.1  40 LEQLEALNHSLSDSDVKIKNLESSllsAQQAVRRLEAAANRAQDAERHLAALEEETDKLLTELRASKEDHRTQIQRYKEAQRELMDMQDQLERIEIEAR 138
                 5666666555555566666666663335555666677777888999999***********************************************999 PP

      APG6_N 128 haqnq 132
                 + +++
  CCE29520.1 139 QERQH 143
                 99888 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0055
      APG6_N  20 qaekerdaYeeflkklkkekkeeek...................qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeel 91 
                 +a++er+ Y e  ++l+++++ e++                   ++++ + + + +++l +e ++l+  ++e+ +   + ++e+++l+ el
  CCE29520.1 136 EARQERQHYAETVERLERQREIEKQldaaagrlkgaaatkniqhHKHDSRVIGHFVRDLLQENANLQLGIREMRELLMNSNDEIQSLRDEL 226
                 5799***************999988999998888877666666555555555555888888888888888888877777777777777765 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.9    0.0017       2.3     429     490 ..      19      80 ..      10      84 .. 0.90
   2 ?    5.1  14.4    0.0038       5.3     274     416 ..      82     226 ..      80     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0017
                 HSSS-SS-S-TTTHHHHSTTTSTTTHHHHHHHT-TT--HHHHHHHHHTTTTTSGGGTHHHHH CS
        EzrA 429 kieksnLPgiPesyleelkeasdeieelakeLekkpinikevnkrldeardlveklyektne 490
                 +++k+nL + +++ +ee +   +++e+l+++L+ + ++ik +++ l  a+++v +l+ ++n 
  CCE29520.1  19 EMDKHNLEIENANTVEENRGLLEQLEALNHSLSDSDVKIKNLESSLLSAQQAVRRLEAAANR 80 
                 7899999999999999999999*********************************9998875 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0038
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSHHHHT--HHHHTTGGG-TTTS-GGGSSTTTSTTHHHHHHHHHHHHHHHH..HHHHHHS-S CS
        EzrA 274 edveeelktieeeidsLyddlekEveAkkeveknlkelkeklehlekqnkelkeeldrlkqsYeLseeeleklrelekelkelekdye..eleekleek 370
                 +d+e  l+ +eee d+L   l++ +e +++  ++ ke +++l  +++q++ ++ e ++ +q+Y  + e le++re+ek+l+    +++    +++++++
  CCE29520.1  82 QDAERHLAALEEETDKLLTELRASKEDHRTQIQRYKEAQRELMDMQDQLERIEIEARQERQHYAETVERLERQREIEKQLDAAAGRLKgaAATKNIQHH 180
                 78999******************************************************************************9999833467889999 PP

                 S---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 371 kvaYSelqeeleeleekleeieekqeeileslkslrkdEkrAreql 416
                 k     + + +++l ++ ++++    e++e l +  ++ +  r++l
  CCE29520.1 181 KHDSRVIGHFVRDLLQENANLQLGIREMRELLMNSNDEIQSLRDEL 226
                 9988889999999999999999999999888888777777766665 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  10.3    0.0017       2.3      20     127 ..      69     180 ..       7     275 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0017
  V_ATPase_I  20 afqrkfvkevrrcdemerklrfleeeieklekavikeeea...eesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakef 115
                 +  r+  +   r ++ er+l  leee +kl ++ + ++e+   + ++ ++ ++el +++++le++e e ++ ++++ +  ++l++  e ++ l  a+  
  CCE29520.1  69 QAVRRLEAAANRAQDAERHLAALEEETDKLLTELRASKEDhrtQIQRYKEAQRELMDMQDQLERIEIEARQERQHYAETVERLERQREIEKQLDAAAGR 167
                 344677778899999999999999999996655555444434444555667778888888888888888888888888888888888888777777777 PP

  V_ATPase_I 116 leee.eeeeeeee 127
                 l+ + ++++ +++
  CCE29520.1 168 LKGAaATKNIQHH 180
                 7655222222222 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1  19.9      0.75     1e+03     203     330 ..      13     139 ..       3     144 .. 0.56
   2 ?    8.0   6.5    0.0012       1.7     207     297 ..     167     252 ..     122     266 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.75
      HMMR_N 203 akvaqLkeklvslekekieekseteklleyieelsnvseqlekykldiaqleellkekndeiesLk...ssLeekeqelskqvkdlnekckllekekee 298
                 +++  L+  + +le e++++ +e++ ll   e+l+++ ++l     +i++le+ l ++++ +  L    +  ++ e +l +  ++ ++ + +l ++ke+
  CCE29520.1  13 ERIERLEMDKHNLEIENANTVEENRGLL---EQLEALNHSLSDSDVKIKNLESSLLSAQQAVRRLEaaaNRAQDAERHLAALEEETDKLLTELRASKED 108
                 3333344333334444444444444444...44455555555557888888888877777777665111445666667777777777777777777773 PP

      HMMR_N 299 lvreeeekeqtlsaEleelkeklklkeqeaqk 330
                   r + ++ ++ + El +++++l+  e ea +
  CCE29520.1 109 -HRTQIQRYKEAQRELMDMQDQLERIEIEARQ 139
                 .3444455556677788888777776666555 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0012
      HMMR_N 207 qLkeklvslekekieekseteklleyieelsnvseqlekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekckllekeke 297
                  L  k  +  k+ +  k +++   + +  l ++  +l   +l i++++ell + ndei+sL+ +L   + ++s  ++  ++   +le e  
  CCE29520.1 167 RL--KGAAATKNIQHHKHDSRVIGHFVRDLLQENANL---QLGIREMRELLMNSNDEIQSLRDELMPHQPVMSGSADVTSTLRTELEPEYR 252
                 22..233456667889999999999999999999999...**************************9999999888888888778876554 PP

>> FHIPEP  FHIPEP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.4    0.0014       1.9     439     514 ..     167     243 ..      97     247 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0014
                 HHHHHHHTTT--EEEHHH.HHHHHHHHHHHHCHHHCHCHHHHHHHHHHHHTTHHHHHHHHH.HHS-HHHHHHHHHHH CS
      FHIPEP 439 eqreeaeaagytvvdpss.vlathlsevikrhaaellgrqevkklldelkkeapklveelvpkllslgelqkvLqnL 514
                 + + +a++++++  ++ s v+ + ++ +++++a+  lg++e+++ll + ++e ++l +el+p++  ++  ++v  +L
  CCE29520.1 167 RLKGAAATKNIQHHKHDSrVIGHFVRDLLQENANLQLGIREMRELLMNSNDEIQSLRDELMPHQPVMSGSADVTSTL 243
                 445566667777766655155566789***********************************998877777776665 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       2.2     3e+03      45      59 ..      32      46 ..      10      75 .. 0.46
   2 ?    7.0   1.4    0.0049       6.7      25      79 ..      71     125 ..      57     135 .. 0.81
   3 ?    0.7   0.1      0.47   6.5e+02      29      67 ..     117     155 ..     113     179 .. 0.72
   4 ?    1.1   0.0      0.35   4.9e+02      43      84 ..     202     243 ..     171     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.2
      DUF948 45 ilkevedllakvnel 59
                +++e ++ll++ ++l
  CCE29520.1 32 TVEENRGLLEQLEAL 46
                333333333333222 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0049
      DUF948  25 kktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavad 79 
                  + l++aa++ ++ e+++ ++ +e+++ll++ ++  ed + ++++ ++   ++ d
  CCE29520.1  71 VRRLEAAANRAQDAERHLAALEEETDKLLTELRASKEDHRTQIQRYKEAQRELMD 125
                 567888999999999*******************999999999987776665555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.47
      DUF948  29 deaaatieelekqvdpilkevedllakvnelledvnekl 67 
                 +ea++ + ++++q++ i  e+++  ++  e++e ++++ 
  CCE29520.1 117 KEAQRELMDMQDQLERIEIEARQERQHYAETVERLERQR 155
                 677888888888888888888887777777777766654 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.35
      DUF948  43 dpilkevedllakvnelledvneklekvdplteavadlgesv 84 
                 +  ++e+++ll ++n+  + ++++l   +p+++  ad++ ++
  CCE29520.1 202 QLGIREMRELLMNSNDEIQSLRDELMPHQPVMSGSADVTSTL 243
                 555789999999999999999999999999998888888776 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   4.4      0.16   2.2e+02      25      80 ..      41      92 ..      19     109 .. 0.53
   2 ?    8.1   7.5    0.0016       2.2      20      94 ..      88     166 ..      84     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.16
  Phage_GP20 25 eerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlk 80
                e+ + l+ +l d d ++++L+ +     + q+++  l+a++++  +++e  +a+l+
  CCE29520.1 41 EQLEALNHSLSDSDVKIKNLESS---LLSAQQAVRRLEAAANR-AQDAERHLAALE 92
                45555666666666666666555...44555555555555554.344444444433 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0016
  Phage_GP20  20 ldeveeerdtlkeql....kdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlkldnaielaLkeaka 94 
                 l+ +eee d+l ++l    +d  +q++  k+++ +  ++q q+e ++ ++ ++ + y++ ++ l+ +  ie++L++a  
  CCE29520.1  88 LAALEEETDKLLTELraskEDHRTQIQRYKEAQRELMDMQDQLERIEIEARQERQHYAETVERLERQREIEKQLDAAAG 166
                 666777877777776333357789**************************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2038  (0.113671); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.17u 0.30s 00:00:01.47 Elapsed: 00:00:00.49
# Mc/sec: 4085.30
//
Query:       CCE29521.1  [L=640]
Description: uncharacterized protein CPUR_03368 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-46  158.8   0.0    2.2e-46  157.7   0.0    1.6  1  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7   0.0   1.2e-50   2.2e-46       1     155 [.      30     195 ..      30     196 .. 0.97

  Alignments for each domain:
  == domain 1  score: 157.7 bits;  conditional E-value: 1.2e-50
  NAD_binding_9   1 aivGaGprGlavlerLlara....kkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddp..........ptfaeWlrergaleea 82 
                    aivGaGprG+++lerL+++a     + ++++++++dp++pgag+vwrtdqs++ll+N+++s+++lftd++          p++++W+++ +     
     CCE29521.1  30 AIVGAGPRGTSTLERLCSSAsqlsGRNTNVTVHVIDPYPPGAGQVWRTDQSPQLLMNTVTSQVTLFTDKSvlcdgpicpgPSLYDWAKTAE----- 120
                    8*******************988777899************************************************************98..... PP

  NAD_binding_9  83 eeldpddfvpRalyGrYlrdlfeellarlpegvtvevhraevvdleeradg.qavlladgasl.aadaVvLAlGh 155
                    ++l p+d+++Ra yGrYl+++fee+l+++p +vt++ h+a++++l++++dg q+++l++g+ l  + aVvLA+Gh
     CCE29521.1 121 PQLGPNDYATRAQYGRYLEWVFEEILRTAPGHVTIRTHKARALQLDDEPDGsQTITLSTGKVLsGLAAVVLAQGH 195
                    69************************************************9559999*****989*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4656.94
//
Query:       CCE29522.1  [L=536]
Description: probable maltose permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-73  247.2  23.4    3.5e-73  247.0  23.4    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.5e-09   37.3  35.4    1.3e-06   27.6  14.9    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.0  23.4   3.9e-77   3.5e-73       3     452 .]      68     509 ..      66     509 .. 0.92

  Alignments for each domain:
  == domain 1  score: 247.0 bits;  conditional E-value: 3.9e-77
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkns 101
                 ++ +++ ++ g+d  +i +f++l++f++++g    +++ e ++ +++++     +G+++G+l +g+  +++GR+k+l+i++  ++   ++q++a+   s
  CCE29522.1  68 MFFCIAVVMAGFDAQIITSFYALPAFQRKYGDRLGDGKFEIAAPWQTALGMGNPIGQVLGALASGYPLHYLGRRKTLAICCCWSIGFVFVQFFAT---S 163
                 66778889***********************99999988888999999999999*****************************************...* PP

                 -TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHH CS
    Sugar_tr 102 vevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylve 200
                 + +l+vg +l G++ G+  v++P+y+sE++p  lRg+l++  +la ++G++va+++ +g+++  +++ +ri++++q+v++++ll++l f+PESP++lv 
  CCE29522.1 164 IGMLCVGEILGGLAYGFYVVIAPTYASEVCPLILRGFLTTSVNLAFVIGQFVAQGCAAGVETRLDEWAYRIPFAIQWVWPVVLLAGLPFAPESPYWLVR 262
                 ************************************************************888888********************************* PP

                 TT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH..........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHH CS
    Sugar_tr 201 kgkeeeakevlaklrgeedadrelaeekdsleaeqeee.....kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvti 294
                  g++ ea++ l +  +++++ ++++++   +e+++  e     +++++  ++ ++ + r+ i v++ ++q   G n ++ y+ ++fe++gls s    +
  CCE29522.1 263 CGRTAEARMALLQ-LTSSKNRPDIDKILVGIEQTDLLErqyatETTYRDCFKGIS-LVRTEISVMVYLIQVIGG-NPLIGYANYFFEQAGLSSS--DAF 356
                 *************.66777888888888888888766666788788888888878.677777887777765555.*******************..889 PP

                 HHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHH CS
    Sugar_tr 295 ivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiava 393
                  +gv n++  f+       +GRRt++  G+a+m+++++++g  +l +++ +++a  ++  ++ ++++++++++gp+++v++sE++ +++R  ++aia+a
  CCE29522.1 357 SMGVANTALGFFN------LGRRTIYTSGLAVMTALLFVIG--FLSIPKYNTGAIWAMASLMDVWTFVYQMTVGPICFVIISEISATRLRERTIAIATA 447
                 9999999998887......9********************9..777777765555666666669*********************************** PP

                 HHHHHHHHHHHHHHHHHCHHH...T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 394 vnwlanflisllfpiiteaig...ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 v+  a++++++ +p+++++ +   gg+++++f+++ ++ +++++f +pe  +rt ee++ lf
  CCE29522.1 448 VQAGASIVTTIAMPYMLNSNEadwGGKSGFMFGAISIVCLVWCYFRLPESRNRTYEELDILF 509
                 ******************999999*********************************99876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6  14.9   1.4e-10   1.3e-06       2     166 ..      71     248 ..      69     345 .. 0.81
   2 !   14.5  13.5   1.4e-06     0.012      39     180 ..     352     500 ..     322     507 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.4e-10
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg.........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllv 90 
                 ++a++++++++ i+++++ l a ++ +g         i++  +  l  +  +g+++++l  G+    +Grr++l ++  +++ ++++ +fa+s+ +l+v
  CCE29522.1  71 CIAVVMAGFDAQIITSFYALpAFQRKYGdrlgdgkfeIAAPWQTALGMGNPIGQVLGALASGYPLHYLGRRKTLAICCCWSIGFVFVQFFATSIGMLCV 169
                 78999999999999999999999999996655554444443344467779**********************98888888888834444767777**** PP

       MFS_1  91 lrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafv 166
                 + +l Gl++g+++ ++ ++++++ p   rg+ +  ++++f +G  ++ + ++ + + l    +r +f i  +  ++++ 
  CCE29522.1 170 GEILGGLAYGFYVVIAPTYASEVCPLILRGFLTTSVNLAFVIGQFVAQGCAAGVETRLDewaYRIPFAIQWVWPVVLLA 248
                 *********************************************9977777665566655577777776666666633 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.4e-06
       MFS_1  39 tlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllf.a......sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsag 129
                 +  a+ ++va+  lG++  ++Grr ++  gl+++ + l+++ f +        +w +  ++ v + + + ++ p++ ++i+++++ + r r i++++a 
  CCE29522.1 352 SSDAFSMGVANTALGFF--NLGRRTIYTSGLAVMTALLFVIGFlSipkyntGAIWaMASLMDVWTFVYQMTVGPICFVIISEISATRLRERTIAIATAV 448
                 55678889999999999..99**********999999555555335564444477565555555555667899************************** PP

       MFS_1 130 fslGailgpllggllasslgWrav...fyilaivsllafvlfllllpeepperk 180
                  + ++i++ ++ ++++ s    +     ++++++s+++  l++++++ ++++++
  CCE29522.1 449 QAGASIVTTIAMPYMLNSNEADWGgksGFMFGAISIVC--LVWCYFRLPESRNR 500
                 ****************8888777755666777777777..66688888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4156.62
//
Query:       CCE29523.1  [L=79]
Description: uncharacterized protein CPUR_03370 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 602.60
//
Query:       CCE29524.1  [L=363]
Description: related to chitinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-13   48.9   0.0    1.3e-12   48.1   0.0    1.3  1  Glyco_hydro_18  Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   7.1e-17   1.3e-12       2     266 ..      35     333 ..      34     348 .. 0.68

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 7.1e-17
                     EEEEEEGGGGGSSG.C..SH.....TTTESEEEEEEEEEEETTTEEEESS.TTHH.HHHHHHHHHHHHTSTT-EEEEEEEETTTTTHHHHHHTS. CS
                     xxxxxxxxxxxxxx.x..xx.....xxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Glyco_hydro_18   2 vvgYysswesygnn.y..lp.....saklthiiyaFakidgengkvvvsd.wedl.gnfeqlkklkkkknpgvkvllsiGGwtdssgfslaast. 85 
                     +v Y+++ +  + + +  lp       +lth+i+  +++++  g++ + d   +    +  +++ k +kn gvk++  +GG++  ++f   + + 
      CCE29524.1  35 LVLYFQTTHHPNGApIsmLPlvnqkGIALTHLIVCSLHVNQ-GGEIHLNDyPPSHpVFYTLWNETKVLKNAGVKIMGMVGGAAP-GSFTRGTLDg 127
                     67788765544222323422333457799**********88.889998887777644445677777999************994.6777776542 PP

                     .HHHHHHHHHHHHHHHHHCT-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSHHH....HHHHCHHHHHHHHT.. CS
                     .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx.. RF
  Glyco_hydro_18  86 .dasrkkfadsvvsllrkygfDGiDidweypggnpedkenytallkelrealdkakategkkllLsaavpasasd....lskgydlpkiakyl.. 173
                       a+ +++ +++ +++ ++++ G+Did e p +    + +  +l+++lr  +       g+++++s+a+ asa      ls   d++ + +    
      CCE29524.1 128 nHATFTNYYRQLRDVIHRFQLQGLDIDVEQPMS----QYGIERLINQLRRDF-------GRDFIISLAPVASALRdggnLSG-FDYNRLDSRSgs 210
                     1577778888899999*************9877....888899*******55.......589**********9995553333.466666555566 PP

                     ..SEEEEETTTSSSTTSSBE--SS-SSBTCSSHHHHHHHHH.HTT--GGGEEEEEESEEEEEEESSSSSS.................TSTTTEEE CS
                     ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxx RF
  Glyco_hydro_18 174 ..DyvnvmtYDfhgswdnvtghhaplydaslnvdeavkeyl.kagvpakklvlGvpfygrawalvsgadn.................tkeegvls 248
                        + n ++Y  +g+ +n+ ++ +      ++ d+a   ++  + + ++  +  +pf    ++ +s ++                     ++ ++
      CCE29524.1 211 kiSFYNTQFYSGFGTMANTYDYTSI-----VSNDFAASRVVaGQLTAPSNGYGYIPFESLNATVASLKNRygeiggvmgweyfnsrpGGTAEPWE 300
                     77********666665554444444.....46666665555344455666666666666655555553336666666677777777756667888 PP

                     HHHHHHHH...............TEEEEEEEEE CS
                     xxxxxxxx...............xxxxxxxxxx RF
  Glyco_hydro_18 249 ykelkell...............kkakakrkyd 266
                     ++++ +++                +  +  +++
      CCE29524.1 301 WAQIMTKIlrpnsvprlaitkftADRLTAAYHQ 333
                     888888887777777777766653333344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2718.43
//
Query:       CCE29525.1  [L=1460]
Description: uncharacterized protein CPUR_03372 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-05   23.0   9.7       0.38   11.0   0.1    8.0  7  NAF         NAF domain
     0.0043   17.6   0.0         34    5.1   0.0    6.5  9  ATPgrasp_N  ATP-grasp N-terminal domain


Domain annotation for each model (and alignments):
>> NAF  NAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.056     5e+02      10      24 ..     297     311 ..     295     331 .. 0.82
   2 ?   -0.5   0.1      0.16   1.4e+03      14      41 ..     439     466 ..     438     481 .. 0.88
   3 ?    2.8   0.0     0.015   1.4e+02       9      43 ..     814     848 ..     813     854 .. 0.86
   4 !   11.0   0.1   4.3e-05      0.38       9      44 ..     890     925 ..     889     930 .. 0.88
   5 ?    2.8   0.0     0.015   1.4e+02       9      43 ..     966    1000 ..     965    1006 .. 0.86
   6 ?   -1.6   0.0      0.37   3.3e+03      14      41 ..    1047    1074 ..    1042    1081 .. 0.81
   7 ?    1.3   0.0     0.043   3.9e+02      16      41 ..    1125    1150 ..    1123    1157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.056
         NAF  10 ISlSsgfDLsgLFee 24 
                 I   s  DLs+LF++
  CCE29525.1 297 IESLSKADLSKLFDQ 311
                 6344567******86 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.16
         NAF  14 sgfDLsgLFeeearFtskkpaeeiiskl 41 
                 s +DL gL++  + + s+ +++ i+s l
  CCE29525.1 439 SKLDLVGLLDAIKPLLSSDSVKGIVSLL 466
                 579******9989999999999999876 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.015
         NAF   9 lISlSsgfDLsgLFeeearFtskkpaeeiisklee 43 
                 l S+ s  DL gL++  + + ++++++ i+s l +
  CCE29525.1 814 LLSMLSKVDLAGLLNALQPLLTENSVRGIVSLLGN 848
                 689***********988999999999999987765 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 4.3e-05
         NAF   9 lISlSsgfDLsgLFeeearFtskkpaeeiiskleev 44 
                 l S+   +DLsgL+e  + + sk++++ iis l ++
  CCE29525.1 890 LLSMLGKLDLSGLLEAVKPLLSKESVSGIISLLGNA 925
                 6789999*******999*************988665 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.015
         NAF    9 lISlSsgfDLsgLFeeearFtskkpaeeiisklee 43  
                  l S+ s  DL gL++  + + ++++++ i+s l +
  CCE29525.1  966 LLSMLSKVDLAGLLNALQPLLTENSVRGIVSLLGN 1000
                  689***********988999999999999987765 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 0.37
         NAF   14 sgfDLsgLFeeearFtskkpaeeiiskl 41  
                    +DL g +e  + + sk+++  i+  l
  CCE29525.1 1047 GKLDLAGVLEAVKPLLSKQSIDGIMTLL 1074
                  579******9999999***999999866 PP

  == domain 7  score: 1.3 bits;  conditional E-value: 0.043
         NAF   16 fDLsgLFeeearFtskkpaeeiiskl 41  
                   DL gL+e  + + sk+++e i+  l
  CCE29525.1 1125 IDLAGLLEAVKPLLSKQSVEGIMGLL 1150
                  69*****9999***********9655 PP

>> ATPgrasp_N  ATP-grasp N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.93   8.3e+03      43      63 ..     445     465 ..     436     468 .. 0.85
   2 ?   -0.3   0.0      0.18   1.6e+03      41      62 ..     671     692 ..     663     695 .. 0.86
   3 ?   -4.2   0.0         2   1.8e+04      40      61 ..     746     767 ..     733     767 .. 0.80
   4 ?   -1.3   0.0      0.37   3.3e+03      40      63 ..     822     845 ..     814     847 .. 0.86
   5 ?   -1.0   0.0      0.29   2.6e+03      42      63 ..     900     921 ..     894     923 .. 0.88
   6 ?   -1.3   0.0      0.37   3.3e+03      40      63 ..     974     997 ..     966     999 .. 0.86
   7 !    5.1   0.0    0.0038        34      42      63 ..    1052    1073 ..    1045    1077 .. 0.88
   8 ?    0.3   0.0      0.12   1.1e+03      40      62 ..    1126    1148 ..    1121    1152 .. 0.88
   9 ?   -3.1   0.0       1.3   1.2e+04      43      62 ..    1205    1224 ..    1201    1226 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.93
                 HHHHHHHHHHHHS--SEEE-- CS
  ATPgrasp_N  43 aaleavralsrerpvdGivtf 63 
                  +l+a++ l +++ v Giv++
  CCE29525.1 445 GLLDAIKPLLSSDSVKGIVSL 465
                 68999*************996 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHS--SEEE- CS
  ATPgrasp_N  41 pdaaleavralsrerpvdGivt 62 
                    ++e ++ l +++ vdGiv 
  CCE29525.1 671 LPSLVESIKPLLTKQSVDGIVG 692
                 55788999************97 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 2
                 -HHHHHHHHHHHHHHS--SEEE CS
  ATPgrasp_N  40 dpdaaleavralsrerpvdGiv 61 
                 d   +l+a++ l +e+ ++Giv
  CCE29525.1 746 DLAGLLNALKPLLTENSIRGIV 767
                 5556899999999999999996 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.37
                 -HHHHHHHHHHHHHHS--SEEE-- CS
  ATPgrasp_N  40 dpdaaleavralsrerpvdGivtf 63 
                 d   +l+a++ l +e+ v+Giv++
  CCE29525.1 822 DLAGLLNALQPLLTENSVRGIVSL 845
                 55678999**************96 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHS--SEEE-- CS
  ATPgrasp_N  42 daaleavralsrerpvdGivtf 63 
                   +leav+ l +++ v Gi+++
  CCE29525.1 900 SGLLEAVKPLLSKESVSGIISL 921
                 5789***************986 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 0.37
                 -HHHHHHHHHHHHHHS--SEEE-- CS
  ATPgrasp_N  40 dpdaaleavralsrerpvdGivtf 63 
                 d   +l+a++ l +e+ v+Giv++
  CCE29525.1 974 DLAGLLNALQPLLTENSVRGIVSL 997
                 55678999**************96 PP

  == domain 7  score: 5.1 bits;  conditional E-value: 0.0038
                  HHHHHHHHHHHHHS--SEEE-- CS
  ATPgrasp_N   42 daaleavralsrerpvdGivtf 63  
                    +leav+ l +++ +dGi+t+
  CCE29525.1 1052 AGVLEAVKPLLSKQSIDGIMTL 1073
                  5689*****************7 PP

  == domain 8  score: 0.3 bits;  conditional E-value: 0.12
                  -HHHHHHHHHHHHHHS--SEEE- CS
  ATPgrasp_N   40 dpdaaleavralsrerpvdGivt 62  
                  d   +leav+ l +++ v+Gi+ 
  CCE29525.1 1126 DLAGLLEAVKPLLSKQSVEGIMG 1148
                  556799***************97 PP

  == domain 9  score: -3.1 bits;  conditional E-value: 1.3
                  HHHHHHHHHHHHS--SEEE- CS
  ATPgrasp_N   43 aaleavralsrerpvdGivt 62  
                   +l+a++ l ++++++Giv 
  CCE29525.1 1205 GLLDALQPLLSKQQIEGIVG 1224
                  68899999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.22s 00:00:01.01 Elapsed: 00:00:00.40
# Mc/sec: 10994.39
//
Query:       CCE29526.1  [L=350]
Description: uncharacterized protein CPUR_03373 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-27   94.2   2.3      8e-27   94.0   1.1    1.8  2  DUF3712   Protein of unknown function (DUF3712)


Domain annotation for each model (and alignments):
>> DUF3712  Protein of unknown function (DUF3712)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.66   1.2e+04      21      46 ..      23      49 ..      16      52 .. 0.63
   2 !   94.0   1.1   4.4e-31     8e-27       2     125 .]      54     176 ..      53     176 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.66
     DUF3712 21 l.vdqtlditdvdaftkflealvlsee 46
                l ++ tld+   + +++f  +l  +e+
  CCE29526.1 23 LaINTTLDAPLPARLSEFSVDLYNKET 49
                446666776666777777777766665 PP

  == domain 2  score: 94.0 bits;  conditional E-value: 4.4e-31
     DUF3712   2 pfakvplpeikikgnsttglvdqtlditdvdaftkflealvlseefklsvkGkttlklgglkfkgvtldKtvtlkGlnslkgfsiedlqlllpdpedgi 100
                 pf+++++ + ki+gn++ ++ +q ++i +++++++++ ++  se+++ls++G +t++lg l+ +  +ldKt++++Gln+l+gf i dl+++ p++++g 
  CCE29526.1  54 PFTNLTIFGQKINGNTKLIIPSQLVTIKNEAELDRWFDQVFDSETVDLSITGRPTVHLGELSST-PNLDKTTSMPGLNRLSGFGIIDLKVVFPPDSNGN 151
                 7899999999*****99999*****************************************999.9********************************* PP

     DUF3712 101 nllatvtlpNpsvvtielGnvtldl 125
                 n+++t+++pN + +t++ Gn+t+d+
  CCE29526.1 152 NIKGTINIPNAGALTLNFGNITFDI 176
                 ***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2725.54
//
Query:       CCE29527.1  [L=448]
Description: probable sulfide:quinone oxidoreductase,mitochondrial precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-14   53.5   0.0    1.5e-09   37.5   0.0    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    5.1e-05   23.3   0.0      0.026   14.5   0.0    2.3  2  NAD_binding_9  FAD-NAD(P)-binding
    0.00099   18.3   0.1       0.13   11.3   0.1    2.2  2  Lycopene_cycl  Lycopene cyclase protein
     0.0073   15.9   0.1      0.017   14.7   0.1    1.6  2  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
       0.07   13.7   0.0       0.25   11.9   0.0    1.9  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
      0.091   12.0   0.0       0.25   10.6   0.0    1.6  2  Malic_M        Malic enzyme, NAD binding domain
        0.1   12.9   0.0       0.28   11.4   0.0    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
       0.13   11.5   0.0        5.7    6.1   0.0    2.4  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.26   10.0   0.0       0.35    9.6   0.0    1.1  1  MCRA           MCRA family


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   7.6e-13   1.5e-09       1     120 [.      37     159 ..      37     184 .. 0.79
   2 !   14.0   0.0   1.1e-05     0.021     185     288 ..     246     346 ..     238     354 .. 0.75

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 7.6e-13
                  CSEEEE--SHHHHHHHHHHHH....HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEECT CS
                  xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaq....agakvtlvelegtclnggcllskallgvaedaeiasevvkklnqg.ielllgeevvkidpgkkkvklekkkeg 93 
                  +++vv+G+G AGla +++l +    ++ ++++v +  t+++ ++  + +  g +++++ ++  +++l  + + +++  +v ++ p+   v+l      
   CCE29527.1  37 HKIVVVGAGTAGLAISHQLLRsgkfNKQDIAIV-EPSTWHHYQPGWTLVGGGLKKKENLRR-TMNELVDSrLGFYKS-SVAAVAPEDSSVTL-----A 126
                  589******************99888*******.9999********888777777777666.345555562555555.9*************.....7 PP

                  CEEEEEESEEEE---EEE-BCTCTTC....... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx......x RF
  Pyr_redox_2  94 deekiaydklvlAtGssprdlgipGv......a 120
                  d+ k+ y++lv+A+G s     i+G+      a
   CCE29527.1 127 DGAKLSYEHLVIAPGLSLDYGSIDGLtdalqnA 159
                  899************887777888885443332 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.1e-05
                  HHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTS.BES.STTEEE-GGGCT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxxxxxx RF
  Pyr_redox_2 185 lsaaleealekeGvevklgtsvkeidgngekle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdefl.rtn.vpgiyaiGDvag 279
                   +a lee ++++Gve  +++  ++i+gn+        e++ +   d++ v   + p + ++  ++ +  +++g++ vd++  r + +p+i+ +GD   
   CCE29527.1 246 YAAKLEELRKERGVEGLFQHDLVAIEGNKATFArSNGEEKVTKSFDMLHVTPKMGPPKFIK--ESAIG-NDAGYVNVDDHTlRHKrHPNIWSAGDAS- 339
                  567889999999*****************94443444444448899999999888887665..44443.478***99998876666*********88. PP

                  ECCSS--HH CS
                  xxxxxxxxx RF
  Pyr_redox_2 280 gkggpelaq 288
                    + p + +
   CCE29527.1 340 --SLPTSKT 346
                  ..4444443 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.3e-05     0.026       1      35 [.      40      73 ..      40      80 .. 0.92
   2 !    6.5   0.0    0.0038       7.6     109     154 ..      99     141 ..      91     143 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpse 35
                   ++vGaG +Gla+  +Ll++  k ++ +i +++ps+
     CCE29527.1 40 VVVGAGTAGLAISHQLLRSG-KFNKQDIAIVEPST 73
                   69*****************7.99**********75 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0038
  NAD_binding_9 109 arlpegvtvevhraevvdleeradgqavlladgaslaadaVvLAlG 154
                    ++l  + ++ +++++v ++++++++  v+ladga+l ++++v+A G
     CCE29527.1  99 NELV-DSRLGFYKSSVAAVAPEDSS--VTLADGAKLSYEHLVIAPG 141
                    4443.35788999*******99987..789**************98 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   6.3e-05      0.13       2      33 ..      39      72 ..      38      89 .. 0.78
   2 !    4.8   0.0     0.006        12      87     143 ..      92     144 ..      86     162 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.3e-05
  Lycopene_cycl  2 vvviGaGpAglslAarlteakp..glkvvlieas 33
                   +vv+GaG Agl++ ++l ++ +  +  + ++e+s
     CCE29527.1 39 IVVVGAGTAGLAISHQLLRSGKfnKQDIAIVEPS 72
                   89***************66553225567777776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.006
  Lycopene_cycl  87 krlkeellerlvengvklleakvesveeeeageslvvleggrkirarlvvdarglas 143
                    ++l++ ++ +lv+++  ++++ v++v++e+    +v+l++g k+     v a gl  
     CCE29527.1  92 ENLRRTMN-ELVDSRLGFYKSSVAAVAPEDS---SVTLADGAKLSYEHLVIAPGLSL 144
                    66777775.68899*************9988...9*********9999999999544 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   8.7e-06     0.017       1      29 [.      38      72 ..      38      88 .. 0.91
   2 ?   -2.6   0.0       1.5     3e+03     137     173 ..     235     271 ..     174     288 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.7e-06
                EEEEECTSHHHHHHHHHHHHTT......EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg......Vtllekg 29
                ++v++G+G +Gl++ ++L r g      ++++e +
  CCE29527.1 38 KIVVVGAGTAGLAISHQLLRSGkfnkqdIAIVEPS 72
                59****************998889999*****986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
                 ETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEE CS
         DAO 137 ypdtgqvdpakltaalaraaealGveilegtevtgle 173
                 +   + +   k++a l +  +++Gve l+++  +++e
  CCE29527.1 235 TGLPAMFAVPKYAAKLEELRKERGVEGLFQHDLVAIE 271
                 4444566677888888888888888888887888874 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013      0.25       1      33 [.      38      70 ..      38      76 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                   EEEEETTSHHHHHHHHHHHHTTS.-GGCEEEEEE CS
  F420_oxidored  1 kigiiGaGnmgealasgllaaga.qpheivvans 33
                   ki ++GaG  g a+ ++ll++g+ ++++i ++ +
     CCE29527.1 38 KIVVVGAGTAGLAISHQLLRSGKfNKQDIAIV-E 70
                   799**************************987.4 PP

>> Malic_M  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00012      0.25      24      46 ..      35      57 ..      11      67 .. 0.82
   2 ?   -2.2   0.0      0.99     2e+03      68     114 ..     260     305 ..     259     347 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00012
                GG--EEEEC-SHHHHHHHHHHHH CS
     Malic_M 24 seqkivvlGaGsagiGiaeqive 46
                + +kivv+GaG+ag+ i++q+++
  CCE29527.1 35 KSHKIVVVGAGTAGLAISHQLLR 57
                789***************99876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.99
                 TEE-BTT-S---TTTGGGSBS--SS--S....SHHHHHHHH--SEEE CS
     Malic_M  68 kGLltedrekleeekkpfakkkeelkeakdkltLeevvkkvkptvli 114
                 +GL  +d   +e +k +fa+++ e k ++++ ++++v  k+ p   i
  CCE29527.1 260 EGLFQHDLVAIEGNKATFARSNGEEK-VTKSFDMLHVTPKMGPPKFI 305
                 68888899999999999999998877.44677777777666665555 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014      0.28       1      26 [.      41      70 ..      41      73 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
                   EE--SHHHHHHHHHHHCCTE....EEEEE- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagf....dvllle 26
                   +vGaG +Gl++ + L + g+    d+ ++e
     CCE29527.1 41 VVGAGTAGLAISHQLLRSGKfnkqDIAIVE 70
                   8*************9997433434777776 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0029       5.7       1      28 [.      40      70 ..      40      80 .. 0.79
   2 ?   -2.5   0.0       1.2   2.3e+03     231     275 ..     109     150 ..      91     173 .. 0.59
   3 ?    2.6   0.0     0.033        65     212     294 ..     244     324 ..     238     336 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0029
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagl...edylilE 28
                 +++GaG aGla+ ++l ++g    +d+ i+E
   CCE29527.1 40 VVVGAGTAGLAISHQLLRSGKfnkQDIAIVE 70
                 79************99776653336666666 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
  Pyr_redox_3 231 fnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflk 275
                  ++++v ++  ++++  v+ +dg k++ ++  v+a G + d+  ++
   CCE29527.1 109 YKSSVAAVAPEDSS--VTLADGAKLS-YEHLVIAPGLSLDYGSID 150
                  34467777766655..5566776654.566677777777776665 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.033
  Pyr_redox_3 212 pdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkkslfeldedgrpvlteete 294
                  p +  +leel ke+ ++ lf++++ +i+ ++ ++  +  + +kv+++ d++ +t      +f+k+s + + + g++ ++++t 
   CCE29527.1 244 PKYAAKLEELRKERGVEGLFQHDLVAIEGNKATFARSNGE-EKVTKSFDMLHVTPKMGPPKFIKESAIGN-DAGYVNVDDHTL 324
                  778889****99988*************998887665555.78999999999999999999999888876.788888888764 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00017      0.35       3      38 ..      38      73 ..      36     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00017
                EEEEE--SHHHHHHHHHHHHTT---GGGEEEE-SS- CS
        MCRA  3 kaylvGsGiasLaaAvyLirdakvpgenihileelk 38
                k+ +vG+G+a+La    L r +k++ ++i i+e ++
  CCE29527.1 38 KIVVVGAGTAGLAISHQLLRSGKFNKQDIAIVEPST 73
                6679****************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3395.56
//
Query:       CCE29528.1  [L=479]
Description: related to nicotinamide mononucleotide permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-34  119.0  32.9    2.1e-34  119.0  32.9    1.6  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0  32.9   1.2e-38   2.1e-34       2     352 ..      44     406 ..      42     407 .. 0.83
   2 ?   -1.9   0.0     0.067   1.2e+03     156     174 ..     424     442 ..     422     456 .. 0.63

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 1.2e-38
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 l++++l++l+rs++g a    + +dl++s +++ +llt+++++++v+ +++ +   + + +r ++ + ++++++++++ + a+++w +l+++r++ +l+
  CCE29528.1  44 LVLFLLAFLDRSNIGNARIAGMEHDLHLSSDQYEWLLTIFYIAYIVFEPLIIVH--KvLKARVWVAILVAGWGIAATAQA-AAQSWsALMACRFFLALF 139
                 66788888889988888888******************************9665..436678888888888888834444.488899************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg...Wravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                 ++++ p++++l++  + ++e g+ ++++ +++ lG+ ++ +l+ +++  +++   Wr++f++ ++  l+++v+ ++ +p ++++ +  ++ e++     
  CCE29528.1 140 EAGFGPGSIYLLSFFYLRSEIGLRVAIFFSAAPLGTCFAGVLAYAITsGHASianWRLLFLVEGLPVLVMAVVSYFAMPNSAHDAWFLTDDEKRvalar 238
                 ***********************************************55555*****************************************999996 PP

       MFS_1 189 ........kgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrll 278
                          ++g  ++++ +  ll  + +w  +l+ + ++ + +s+l ++lp++  +++g+sgl + g l+a ++++++ + +++++++dr  +r r l
  CCE29528.1 239 qvkqvgltDRVGTINWRDTFLTLLDVK-VWlTALMYFSCN-VSYSSLPVFLPTI-LKDMGYSGLTSQG-LSAPPYFAAFLVTIVTAFFADR--SRQRGL 331
                 665555555555555555444444444.353333333333.36666*******7.*******855555.677777777777**********..999*** PP

       MFS_1 279 lallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 + ++l++l+  g+++la   ++ + +++++++ + ++ ++  ++  ++++  + e++g+ + l n++g+ g +lg
  CCE29528.1 332 FVISLAVLGGTGYLMLAIGRHTGVRYVGVFFAAMgAFPTIANIIPWVLNNQGSDERRGAGIVLLNLVGQCGPLLG 406
                 **********************************55555555555556666688*****************9998 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.067
       MFS_1 156 ilaivsllafvlfllllpe 174
                 i+a++++l++vl+++l + 
  CCE29528.1 424 ICAAFMFLVAVLAIILRTI 442
                 6677777777766655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3450.11
//
Query:       CCE29529.1  [L=351]
Description: probable endo-polygalacturonase 6 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-30  104.1   0.0    6.3e-30  103.3   0.0    1.5  1  ADH_N_2       N-terminal domain of oxidoreductase
    5.2e-21   75.0   0.1    7.7e-21   74.4   0.1    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
      4e-09   37.6   0.1    1.1e-08   36.2   0.0    1.7  3  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.0   1.1e-33   6.3e-30       3     106 ..       8     115 ..       6     117 .. 0.92

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 1.1e-33
     ADH_N_2   3 wvlkkrpegapte.sdfeleeeelp...elkdGevlvralylSvDPymRgrmndaksyvepvelgdvmrggavgeVveSknpdfkvGdlVvgllgwqdy 97 
                 ++l++rp++++ + ++f+ +++++p   +lkdGe+lv++lylS+DP+mRg++nd++sy++pv++g vmrg+ v++V+++k++ ++ Gd+V++++gw++y
  CCE29529.1   8 IILAERPTDNIIPgQTFHEKKSPIPspaDLKDGEILVEVLYLSLDPAMRGWLNDSRSYIPPVKIGAVMRGASVARVLATKSKLVSSGDFVSAMSGWTQY 106
                 78999999887653788999999985566899******************************************************************* PP

     ADH_N_2  98 avsdgkgle 106
                 av +++++e
  CCE29529.1 107 AVLNEEQFE 115
                 ****99886 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.1   1.3e-24   7.7e-21       2     122 ..     167     292 ..     166     304 .. 0.86

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 1.3e-24
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEE.. CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakk.lGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeee.. 96 
                  G+ a q+Ak+ Ga+v+++++s++k++ +   lG d+++nyk ad++e  k++t ++ +dv+f+ vG g+ l+++l+ +k++ r+v++Gg + + ++  
  CCE29529.1 167 TGSVAGQIAKIKGATVVGICGSDSKCQWLVNdLGFDAALNYKAADFKETFKAAT-KNYIDVYFDNVG-GEILDMCLARAKEHSRFVMCGGiS-QYNTsa 262
                 699***********************976666*********666**********.89**********.**********************63.444446 PP

                 ....EEHHHHHHTT-EEEEE-SSCHHHHHH CS
  ADH_zinc_N  97 ....fdlrnlllkeksilGsllgslreefk 122
                      ++++l+  +++++G+++ + +e ++
  CCE29529.1 263 pvgpKNISKLITMRIKMQGFIVFDHKEHIP 292
                 888899999************999544444 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.4   1.4e+04      42      54 ..      90     101 ..      73     138 .. 0.54
   2 ?   -2.8   0.0       2.1   1.2e+04      37      55 ..     144     163 ..     113     180 .. 0.69
   3 !   36.2   0.0   1.8e-12   1.1e-08       1     133 []     199     339 ..     199     339 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.4
                   HEEEEEEEEE--- CS
  ADH_zinc_N_2  42 vlpggGrlvsigg 54 
                   +++  G++vs  +
    CCE29529.1  90 LVSS-GDFVSAMS 101
                   2233.44444332 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.1
                   HHHHHHE.EEEEEEEE---- CS
  ADH_zinc_N_2  37 easlkvl.pggGrlvsiggp 55 
                   +   ++  p++G+lv+++g 
    CCE29529.1 144 WGMTQIGdPKPGDLVVVSGA 163
                   55555556666888877753 PP

  == domain 3  score: 36.2 bits;  conditional E-value: 1.8e-12
                   TT-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-......... CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas......... 84 
                   lG+d +++y++ df+    aat ++ +Dv +d+vgge l + +l+  + + r+v+ gg      +++ +  +  ++ +++ l++m+ +         
    CCE29529.1 199 LGFDAALNYKAADFKetfkAAT-KNYIDVYFDNVGGEIL-DMCLARAKEHSRFVMCGG------ISQYNTSAPVGPKNISKLITMRIKmqgfivfdh 287
                   89****************5555.788***********88.9999888888****9997......333333333344444444443333335566664 PP

                   ...-HHHHHHHHHHHHHHH----EEEE.EEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  85 ..aqadileelaalieeGklrpvvdrv.fpleeaaeAhrylesgrarGKiVl 133
                     +   i +el ++++eGk + + +    +l +a++A+ +l +gr  GK+ +
    CCE29529.1 288 keHIPAIRKELSQWLAEGKMKKTETILkGGLVAAQQALVDLYNGRNQGKLLV 339
                   56455556***********99776644499*******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2500.82
//
Query:       CCE29530.1  [L=781]
Description: related to ubiquitin thiolesterase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-38  131.9   0.0    3.9e-38  131.4   0.0    1.2  1  UCH         Ubiquitin carboxyl-terminal hydrolase
    3.8e-23   81.6  10.1    5.9e-19   68.2   2.4    3.0  2  zf-UBP      Zn-finger in ubiquitin-hydrolases and other prote
    2.5e-22   78.4   1.5    3.9e-21   74.6   0.1    2.5  2  zf-UBP_var  Variant UBP zinc finger
    2.9e-20   71.8   0.0    1.4e-09   37.7   0.0    2.5  2  UBA         UBA/TS-N domain
      4e-17   62.8   0.0    1.7e-15   57.5   0.0    3.0  2  UCH_1       Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.0   1.1e-41   3.9e-38       1     256 [.     301     777 ..     301     778 .. 0.87

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 1.1e-41
                 -EES-SSSTHHHHHHHHHHHTSHHHH.HHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH................SH-CCEE--HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxx RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelr.dyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell................kskskavsPkklk 82 
                 tGl+NlGn+Cy+ sv+QcLf  p++r +y+l       +++ +              l ++l+++   l+                 + ++ ++P +lk
  CCE29530.1 301 TGLKNLGNSCYLASVIQCLFDFPSFRdRYFLPGMDMPIVDEAAA------------DLETQLRKIGDGLWsgryskpdanvhpesqVNYQRGLAPAMLK 387
                 7******************************9544444444443............388999999999999988877777777776446779999**** PP

                 HHHHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHCC.....HCCCHHHHHHCCCTTSHHHHHH-EEEEE............................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxx............................... RF
         UCH  83 ktlsklaksfsgykqqDaqEflaflLdqlhedlnr.....evaeekwkkhlkrndslitdlfegqlks............................... 145
                   +++ +++fs+++qqDa Efl++l++ ++++ ++                       t  f++ l++                               
  CCE29530.1 388 HLVGRGHEEFSTMRQQDAFEFLMHLFKLISRSKHSkelkdP-----------------TAQFRFILEErlqclgcrkvkynsveqdnifikvplekvpv 469
                 *****************************999988444440.................34444444444444555556666666666777777777777 PP

                 ............................................EEEEEEB-SEEEEEEESEEETEE.EEE--SEEB--S.EEE-GGGBSS-BTTS-TC CS
                 ............................................xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
         UCH 146 ............................................klklkrlPeiLiihlkRfsynss.ksKlntkvefpe.eldlssylaeekkkktee 198
                                                             +  +k+lP++Li++  +++  ++ + K++ +v +p+  + l+ y++++ ++ +e+
  CCE29530.1 470 qigdeetddkykpvtiqecldiftaaeevqlqctscggnqgfskQSLFKTLPDVLIVNAGKMTVINWvPVKIDVPVIVPDePILLDGYMSKGLQPFEEQ 568
                 777777777777777777777777778889999*******************************8888***********75788899999888887776 PP

                 S-B................................................................................................ CS
                 xxx................................................................................................ RF
         UCH 199 kkk................................................................................................ 201
                  +                                                                                                 
  CCE29530.1 569 FPAepessvpafvpeatalaqleamgfprnrsekalhatgnsdansamewlfahmedadidapldlgrtgtgaasaftadpekiemlgamgfgapqakk 667
                 6668889999***************************************************************************************** PP

                 ..................................................EEEEEEEEEES.CTTSEEEEEEEECTTTTE....EEEEETTEEEEE-HH CS
                 ..................................................xxxxxxxxxxx.xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxx RF
         UCH 202 ..................................................YeLiavvvHsG.slssGHYvayiknekngk....WykydDetvkevkee 245
                                                                   Y+L ++v+H+G s + GHYva+i+++ +g     W+ ++De+v e+++ 
  CCE29530.1 668 alketggdveravewlfshpddqgdyddnatsaepvapkapagsaalpapYQLQSIVCHRGtSIHAGHYVAFIRKQVEGHespiWVLFNDEKVVESNDI 766
                 *************************************************************99***********7777768999*************98 PP

                 CCCTTCEEEEE CS
                 xxxxxxxxxxx RF
         UCH 246 eevlssayiLf 256
                 +e+++ ay++f
  CCE29530.1 767 DEMRKYAYVYF 777
                 99999****98 PP

>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.0   2.1e-06    0.0074       1      46 [.      25      72 ..      25      76 .. 0.78
   2 !   68.2   2.4   1.6e-22   5.9e-19       1      63 [.     174     247 ..     174     248 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.1e-06
                -TTTH--..SS..EEEETTT--EEE-TTTT-HHHHHHHHH---EEEETT CS
      zf-UBP  1 CseCnse.nkn..lWlCLkCghvgCgrksnghalkHyeetrHplavdls 46
                C++C  + +++  l +CL+C + gC     +h++ H     Hpla++++
  CCE29530.1 25 CTQCFDSiDDSagLDVCLQCFNGGCAG-DGSHSKLHSALRSHPLAMNIR 72
                6666644333333668*********96.67*****************87 PP

  == domain 2  score: 68.2 bits;  conditional E-value: 1.6e-22
                 -TTTH--.SSEEEETTT--EEE-TTT......T-HHHHHHHHH---EEEETTT--......EEETTTTEEBE-GC CS
      zf-UBP   1 CseCnsenknlWlCLkCghvgCgrks......nghalkHyeetrHplavdlstls......vycyscddevedke 63 
                 C+ C    +nlWlCL+Cg+ gCgrk+      n+hal+H  e++H +av+l++++      +ycy+cd+e  d++
  CCE29530.1 174 CTGCTLH-ENLWLCLECGNLGCGRKQmggvdgNSHALAHSSESGHGVAVKLGSITpegtadIYCYKCDEERVDEN 247
                 999**99.***********************9*************************************988775 PP

>> zf-UBP_var  Variant UBP zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.1   1.1e-24   3.9e-21       4      63 ..      14      76 ..      11      77 .. 0.96
   2 ?    2.4   0.1     0.037   1.3e+02      28      58 ..     183     223 ..     177     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 1.1e-24
  zf-UBP_var  4 psssdkVyKdECvycFdtpesedGlyvcLkcFlgfck...khaekhaektghpvylnikrtkk 63
                p+  + Vy+++C++cFd+ ++  Gl+vcL+cF+g+c+   +h+++h++ ++hp+++ni+r++k
  CCE29530.1 14 PTPFQSVYREDCTQCFDSIDDSAGLDVCLQCFNGGCAgdgSHSKLHSALRSHPLAMNIRRKRK 76
                77889********************************************************98 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.037
  zf-UBP_var  28 lyvcLkcFlgfck..........khaekhaektghpvylni 58 
                 l  cL+c + +c           +ha +h++++gh v++++
  CCE29530.1 183 LWLCLECGNLGCGrkqmggvdgnSHALAHSSESGHGVAVKL 223
                 667888877777668888888889************99875 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   3.8e-13   1.4e-09       2      37 .]     583     619 ..     582     619 .. 0.97
   2 !   31.7   0.0   2.9e-11     1e-07       2      37 .]     648     683 ..     647     683 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 3.8e-13
                 CHHHHHHHHHTTS-HHHHHHHHHHTTT.SHHHHHHHH CS
         UBA   2 deeaiqrLveMGFdreevveALratgn.NeErAveyL 37 
                 +++a+++L +MGF+r++ ++AL atgn + + A+e+L
  CCE29530.1 583 EATALAQLEAMGFPRNRSEKALHATGNsDANSAMEWL 619
                 7899********************************9 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 2.9e-11
                 CHHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   2 deeaiqrLveMGFdreevveALratgnNeErAveyL 37 
                 d+e+i+ L +MGF   ++++AL  tg+++ErAve+L
  CCE29530.1 648 DPEKIEMLGAMGFGAPQAKKALKETGGDVERAVEWL 683
                 789********************************9 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.08   2.9e+02       2      26 ..     302     326 ..     301     334 .. 0.89
   2 !   57.5   0.0   4.7e-19   1.7e-15      97     320 .]     396     760 ..     362     760 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.08
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplr 26 
                 GL n  + +Yl s++Q+l+  p +r
  CCE29530.1 302 GLKNLGNSCYLASVIQCLFDFPSFR 326
                 9999**************9888887 PP

  == domain 2  score: 57.5 bits;  conditional E-value: 4.7e-19
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x........xxxxxxxxxxxxxxxxxx RF
       UCH_1  97 slssliq.sfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyP.k........psnekkeakvtfasilks 185
                 ++s++ q    +fl++ ++  ++++++   +e ++ +  +++ +e++++cl C++ k ++     + +k P +        ++++ k + vt++++l  
  CCE29530.1 396 EFSTMRQqDAFEFLMHLFKLISRSKHS---KELKDPTAQFRFILEERLQCLGCRKVKYNSVEQDNIFIKVPlEkvpvqigdEETDDKYKPVTIQECLDI 491
                 445555524777777766666555443...45555666799************998733333333223556523555577644446666699*****99 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................ RF
       UCH_1 186 slerekttrawCekCkryqpteqrktvknlPpvLalnakleeeeelelwkt................................................ 236
                 +    ++ +  C +C   q +++++ +k lP+vL++na+  +      w                                                  
  CCE29530.1 492 FTAA-EEVQLQCTSCGGNQGFSKQSLFKTLPDVLIVNAGKMTVI---NWVPvkidvpvivpdepilldgymskglqpfeeqfpaepessvpafvpeata 586
                 9888.77789*****************************86554...465577799999999999999******************************* PP

                 .............................................................................................xxxxxx RF
       UCH_1 237 .............................................................................................knwlpl 242
                                                                                                               +wl +
  CCE29530.1 587 laqleamgfprnrsekalhatgnsdansamewlfahmedadidapldlgrtgtgaasaftadpekiemlgamgfgapqakkalketggdveraVEWLFS 685
                 *****************************9999999999999999999999999999999999999999999999888888888888888876677776 PP

                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 243 eiklsldedknl.eeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppesqWylFNDflV 320
                 + + + d d+n  +++  + +++a +    + Y+Lqs+v+h+g+s ++gh+v++++ + + +e       W+lFND +V
  CCE29530.1 686 HPDDQGDYDDNAtSAEPVAPKAPAGSAALPAPYQLQSIVCHRGTSIHAGHYVAFIRKQVEGHE----SPIWVLFNDEKV 760
                 66666666555566666667777888889999***********9989*********6555544....559******766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 5639.12
//
Query:       CCE29531.1  [L=333]
Description: probable mitotic spindle assembly checkpoint protein mad2p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-33  114.8   0.0    5.3e-33  114.4   0.0    1.1  1  HORMA     HORMA domain
  ------ inclusion threshold ------
       0.02   14.9   0.2      0.066   13.2   0.2    1.9  1  ATG101    Autophagy-related protein 101
      0.046   14.2   0.1       0.37   11.3   0.0    2.2  2  DUF2660   Protein of unknown function (DUF2660)


Domain annotation for each model (and alignments):
>> HORMA  HORMA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   8.9e-37   5.3e-33       1     212 []     125     321 ..     125     321 .. 0.87

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 8.9e-37
       HORMA   1 SlelvkellaasissilylRglfpedaFedrklsglklkiLlrgsseeadrlldwLekGvfdaLe....kkyLealiltIy.kdkdepenvlEsYtFsf 94 
                 S+ lv e++++si++il++Rg++p+++F+ +k+  + l++L+ ++    d+++++++k ++ +L+     +++++l+++I+ kd+ e   ++E+++F++
  CCE29531.1 125 SARLVAEFFQYSIHTILFQRGVYPAEDFSAVKK--YGLNMLVSSD----DQVKAYIKK-IMGQLDkwmvGGKISKLVIVITdKDTGE---HVERWQFDV 213
                 789*****************************9..9*****8888....9******99.*****988889**********9777777...9******** PP

       HORMA  95 kytksggkedvssskletkkknleslsldekeeekkktekevkkelealirrlitltqsLpplpekryltmkLlytdd....tPedyePpgFkaaaeee 189
                 +++++ +k++++ss+ + ++++++++++ + +++ +kte+e+++e++a++r++++++++Lp+l+   ++t+++l+++d    +P ++       ++   
  CCE29531.1 214 QISQTVSKSKSKSSDSNGQDQENATVETPS-SADPDKTEAEIQSEIAAIFRQITASVTFLPQLH--GDCTFNVLVYADadsdVPVEW-------GD--- 299
                 **9988887777777766666666655544.888889**************************9..9***********666666666.......33... PP

       HORMA 190 dstrkeneepekvsvGkvdtghh 212
                  s++ke  + e+v+++ ++t  h
  CCE29531.1 300 -SDAKEIANGEHVQLRGFSTANH 321
                 .3458888899999999998877 PP

>> ATG101  Autophagy-related protein 101
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.1e-05     0.066       7     114 ..     127     223 ..     121     277 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
      ATG101   7 sqvrevvkailhtIlFhRllgkvkp.kdvevesldltyvavsdeelerlvdekvealvralekasssksgqivvqFfekkrkkawfgkkeeevvWEqWi 104
                 + v e  +  +htIlF+R + + +  ++v+  +++l +   sd+++++ +++ + +l +++   +    +++v+   +k         + e+v  E+W+
  CCE29531.1 127 RLVAEFFQYSIHTILFQRGVYPAEDfSAVK--KYGLNMLVSSDDQVKAYIKKIMGQLDKWMVGGK---ISKLVIVITDKD--------TGEHV--ERWQ 210
                 56788888889*******887776514444..5***************************77643...356777776666........23444..6666 PP

      ATG101 105 vkvevvetp...r 114
                  +v++ +t    +
  CCE29531.1 211 FDVQISQTVsksK 223
                 6666666443221 PP

>> DUF2660  Protein of unknown function (DUF2660)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.3e-05      0.37      31      76 ..     112     160 ..     105     166 .. 0.83
   2 ?   -0.5   0.0      0.29   1.8e+03      49      66 ..     209     226 ..     200     235 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.3e-05
     DUF2660  31 rkksevkklslkekielswqfl.ydltkiilkk..fskedvvevnkiGs 76 
                   ks+v+klslk    l   f+ y +  i++++  +  ed   v+k G 
  CCE29531.1 112 GDKSKVHKLSLKGSARLVAEFFqYSIHTILFQRgvYPAEDFSAVKKYGL 160
                 579************99887643999999999866789******99985 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.29
     DUF2660  49 wqflydltkiilkkfske 66 
                 wqf   +++++ k  sk 
  CCE29531.1 209 WQFDVQISQTVSKSKSKS 226
                 999999998888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1047  (0.058397); expected 358.6 (0.02)
Passed bias filter:                      689  (0.0384294); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 2537.92
//
Query:       CCE29532.1  [L=300]
Description: uncharacterized protein CPUR_03379 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00032   20.5   0.1     0.0005   19.9   0.1    1.3  1  Peptidase_C97  PPPDE putative peptidase domain
    0.00055   19.6   0.2    0.00084   19.0   0.2    1.2  1  DUF4105        Domain of unknown function (DUF4105)
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.018   15.5   0.0    1.3  1  DUF778         Protein of unknown function (DUF778)
      0.015   15.6   0.3       0.19   12.0   0.3    2.3  1  LRAT           Lecithin retinol acyltransferase
      0.087   12.5   0.0       0.21   11.3   0.0    1.6  1  DUF3301        Protein of unknown function (DUF3301)


Domain annotation for each model (and alignments):
>> Peptidase_C97  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   1.4e-07    0.0005      75     123 ..     140     190 ..     119     201 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.4e-07
                    EEEEEE---HHHHHH....HHHHHHTT--GGG-BTTTB-HHHHHHHHHHHHHS CS
  Peptidase_C97  75 ieigeTevteeevra....ileelsseytgdkYnLiskNCnhFtdelvdfLtg 123
                     ++geT ++++  r+    +++++++  ++ +YnLi++NC++++ +l+d +  
     CCE29532.1 140 FQVGETRFNDDATRRagesVIQSIRE--RQPAYNLITNNCQTYALQLLDAIKV 190
                    37888888777766511115566666..999*************999987765 PP

>> DUF4105  Domain of unknown function (DUF4105)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   2.4e-07   0.00084      67     152 ..     106     195 ..      94     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.4e-07
     DUF4105  67 lkglfggyegsfvvapyrdkireytnvekrdvweyrL...nltpeevral.lahiwelknkpfdYyflteNCatrllelldaarpgllll 152
                 ++ l+g y  ++ + + +d+i++  ++++++ + +++   +++++++r+     i  +++++  Y+ +t+NC t  l+llda++ g++++
  CCE29532.1 106 WAVLVGDYAHQLWMDENFDVIYTNEKIKREEWRTFQVgetRFNDDATRRAgESVIQSIRERQPAYNLITNNCQTYALQLLDAIKVGSNKQ 195
                 67799999999999999999999999999666666541117888999999666778889***********************99888776 PP

>> DUF778  Protein of unknown function (DUF778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   4.9e-06     0.018     120     180 ..     143     201 ..     103     209 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.9e-06
      DUF778 120 vknsy.ddadgirsaPdlsssseefqgeeynLltanchsfvalaLnklryedeedwgvvkla 180
                  + ++ dda   r    + +s +e ++  ynL+t+nc+ +  + L+ ++   ++++g+ +la
  CCE29532.1 143 GETRFnDDA-TRRAGESVIQSIRE-RQPAYNLITNNCQTYALQLLDAIKVGSNKQFGT-TLA 201
                 233445888.56666678888888.889******************999999999886.355 PP

>> LRAT  Lecithin retinol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   5.4e-05      0.19      51     120 ..     121     183 ..      90     187 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.4e-05
                 TCTTS-B--EEEEEEEHHHHHTTSEEEE--HHHHCT----HHHHHHHHHHHTT-E-SCGHHCHHHHHHHH CS
        LRAT  51 svlgvllkkagVrkssleefaagdklrvneksdskaeslpneeviqrAeelvGeveYsllsnNCEhFvty 120
                 +++ v+++ +++++++ ++f  g++   n+ +    ++++ e+viq  +e+  +  Y+l++nNC +++ +
  CCE29532.1 121 ENFDVIYTNEKIKREEWRTFQVGETR-FNDDA----TRRAGESVIQSIRER--QPAYNLITNNCQTYALQ 183
                 45666777777777777777665543.44333....478899999988887..579***********986 PP

>> DUF3301  Protein of unknown function (DUF3301)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.8e-05      0.21      15      43 ..     160     188 ..     155     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.8e-05
     DUF3301  15 WqsrrarElAlqaarraCekldlqLLdea 43 
                  qs+r r+ A++++++ C++  lqLLd  
  CCE29532.1 160 IQSIRERQPAYNLITNNCQTYALQLLDAI 188
                 567888999******************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2091.30
//
Query:       CCE29533.1  [L=607]
Description: probable ATP dependent RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-50  170.7   0.0    1.2e-49  168.4   0.0    2.2  2  DEAD           DEAD/DEAH box helicase
    1.2e-33  115.8   0.0    1.7e-30  105.6   0.1    2.7  3  Helicase_C     Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.022   13.6   0.0      0.087   11.6   0.0    2.0  2  UTP25          Utp25, U3 small nucleolar RNA-associated SSU p
       0.11   12.0  38.3       0.17   11.5  38.3    1.2  1  LYRIC          Lysine-rich CEACAM1 co-isolated protein family


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.4   0.0   2.8e-53   1.2e-49       1     175 [.     212     380 ..     212     381 .. 0.96
   2 ?   -1.4   0.0      0.37   1.7e+03      61     104 ..     453     500 ..     429     517 .. 0.72

  Alignments for each domain:
  == domain 1  score: 168.4 bits;  conditional E-value: 2.8e-53
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 t+iQa+++p +l+g+d ++ aeTGsGKT+af++p++++v++  +k+g+ka++v+PtreLa qt+ +l ++   ++l++++++gg+++++q++ +++g+d
  CCE29533.1 212 TPIQAASWPSTLSGRDAVGVAETGSGKTMAFALPCVESVSS-ITKKGTKAVVVSPTRELAMQTHAQLASLAALAKLKCVCLFGGSSKDEQRALINRGAD 309
                 89*************************************88.899999**********************************************999** PP

                 EEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlpkdvkk 175
                 i+v+tpgrl d++s+g+++ls +rf VlDEadr+ld+gf+d+i++il ++p      + ++rq+++++AT+p++v+ 
  CCE29533.1 310 IIVATPGRLKDFMSDGTVDLSGCRFAVLDEADRMLDKGFEDDIKEILGACP------PrEKRQTLMFTATWPQSVQA 380
                 **************************************************6......446788*********99876 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.37
                 HHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH...HTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxx RF
        DEAD  61 eqtlnnlkkfkkyidlrvlliiggvaardqlskl...dng.vdivvgt 104
                 ++ ++++++f+   ++rv  i g+ ++++  + l   + g + ++v+t
  CCE29533.1 453 KKEATRVEQFLGRKGIRVGGIHGDLKQEQRTRSLeafKTGqTPVLVAT 500
                 555678889999888999888775555555444422144467777777 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0014       6.1      12      73 ..     253     314 ..     243     316 .. 0.75
   2 ?   -4.0   0.0         4   1.8e+04      14      28 ..     362     376 ..     352     399 .. 0.69
   3 !  105.6   0.1   3.8e-34   1.7e-30       6     111 .]     429     538 ..     424     538 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0014
                 HTTTTSEEEEEESSHH..HHHH....HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  12 leeeggkilifvntid..rlek....vklllekkgikvavlhgelpqnereeileqfnkgesdvLiat 73 
                  +++g k++++++t++  +  +    +  l    ++k+++l g  +++e+++ +++      d+++at
  CCE29533.1 253 ITKKGTKAVVVSPTRElaM--QthaqLASLAALAKLKCVCLFGGSSKDEQRALINRG----ADIIVAT 314
                 46899***********641..23444444445559******************9987....3566665 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4
                 TTTSEEEEEESSHHH CS
  Helicase_C  14 eeggkilifvntidr 28 
                 +e++++l+f+ t+ +
  CCE29533.1 362 REKRQTLMFTATWPQ 376
                 567788888888763 PP

  == domain 3  score: 105.6 bits;  conditional E-value: 3.8e-34
                 HHHHH....HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   6 llell....kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                 ll+l+    + ++++++il+f+ +++++ +v+ +l +kgi+v  +hg+l+q++r ++le+f+ g++ vL+atdva+rG+dip+v+lVin+ +p ++++y
  CCE29533.1 429 LLQLIkqhqQGKQKDDRILVFCLYKKEATRVEQFLGRKGIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDY 527
                 4555555457789999**********998889999**************************************************************** PP

                 HHHHTTSSSTT CS
  Helicase_C 101 iqriGRtgRag 111
                 ++riGRtgRag
  CCE29533.1 528 VHRIGRTGRAG 538
                 *********97 PP

>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.61   2.7e+03      76      99 ..     258     281 ..     256     285 .. 0.84
   2 ?   11.6   0.0   1.9e-05     0.087     308     388 ..     423     501 ..     362     527 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.61
       UTP25  76 pkvLillptreaalevvelllkll 99 
                 +k +++ ptre a++   +l +l+
  CCE29533.1 258 TKAVVVSPTRELAMQTHAQLASLA 281
                 68899*********9988888775 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.9e-05
       UTP25 308 pdarfkfftekilpqlkkssskssgiliyipsyfdfvrvrnylkeekvsfaaiseysskkevsraRelFfkgkkkvlLyte 388
                  d+ f+  + ++++q +++++k+++il++     + +rv+++l ++ +  + i+   ++++ +r  e+F++g++ vl+ t+
  CCE29533.1 423 RDKEFR--LLQLIKQHQQGKQKDDRILVFCLYKKEATRVEQFLGRKGIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLVATD 501
                 344444..346889999999**********************************************************997 PP

>> LYRIC  Lysine-rich CEACAM1 co-isolated protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  38.3   3.7e-05      0.17      79     212 ..      19     143 ..       2     201 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.7e-05
       LYRIC  79 adrgaeeksasekagaakpvkaeepkkknkKkaaekkaqpNGravaeaqeevkaaeeketqkqpppaekkaekskevkknKKKakqdvKevqsvstndg 177
                 +++ ++e+  s++ + +k+ k    kkk+kK + +kka    ++++e+qe    a+ ++  +++ +aekka+k     k+ KK ++++ e+q+ ++   
  CCE29533.1  19 KTKTHDEDVGSNEPQLKKEKKEKKDKKKEKKEKKDKKA-EVVKPAQEPQEPQEDANASDD-EAQRKAEKKAKKR---EKKEKKLRESAVEKQEDTA--D 110
                 11122222223455556666666666666666666655.344555555544443333333.3345677777777...6777888889999999997..7 PP

       LYRIC 178 KEpdegaWETkvSnrEKrqqRkkdkvsedsaspgg 212
                 KE+ e a ET   ++EK++++ k  v++++as+  
  CCE29533.1 111 KEAGETAEET--TKKEKKEKKSKPIVKSEAASTTL 143
                 *********9..59*********999999888753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2818  (0.157176); expected 358.6 (0.02)
Passed bias filter:                      880  (0.0490825); expected 358.6 (0.02)
Passed Vit filter:                       329  (0.0183502); expected 17.9 (0.001)
Passed Fwd filter:                        99  (0.00552178); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.52u 0.36s 00:00:01.88 Elapsed: 00:00:00.54
# Mc/sec: 3384.96
//
Query:       CCE29534.1  [L=611]
Description: related to oligosaccharide transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     6e-148  493.8   9.3   6.9e-148  493.6   9.3    1.0  1  Rft-1            Rft protein
    3.7e-11   42.9   2.4    3.7e-11   42.9   2.4    3.2  3  Polysacc_synt    Polysaccharide biosynthesis protein
    0.00085   19.0   0.3    0.00085   19.0   0.3    4.1  5  MatE             MatE
  ------ inclusion threshold ------
        7.3    5.7  17.5      0.083   12.1   3.9    3.4  2  Polysacc_synt_3  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Rft-1  Rft protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  493.6   9.3  1.5e-151  6.9e-148       2     509 ..      50     599 ..      49     601 .. 0.95

  Alignments for each domain:
  == domain 1  score: 493.6 bits;  conditional E-value: 1.5e-151
       Rft-1   2 sakgatflillQlisrlitFllNqllvrflsprilGitvrLelllstiLFlSREairlavlriksk.................kkkseslqkvvnlali 83 
                  ++ga++lillQ+ srl+tF+ Nqll+r+l+  +lG++++Le+ + ++LF+SRE++r+a++r+ ++                 ++ s++ q++vnl+++
  CCE29534.1  50 VVRGASLLILLQVTSRLVTFVANQLLLRYLTAPLLGLATQLEVYYLSVLFFSRESLRVAIQRQGKQtvhhaekagkdaaksqqQAASRDDQAIVNLGFL 148
                 579***********************************************************9999*************9999899999********** PP

       Rft-1  84 pvligivlsivli.lwq.yslsneellqlpyfklsvllvalsiiiellseplyvvaqaelnvklrskleslavlvrclvtfaiivlfekeakegiaila 180
                 ++ +gi++si l  l++ +  s+++  ++p+ +++++l++++ +iellsep++v++q++l +++r+++es+a+++rc+v++ + v+++ +   ++++l+
  CCE29534.1 149 AIGLGIFVSIGLGwLYLaHGVSDSTRQTTPHLTTALYLYGIASFIELLSEPCFVLMQTRLAFGTRATAESVATFLRCIVVVGSAVWASGRG-VSLGLLP 246
                 *************6444355788888899*************************************************************6.89***** PP

       Rft-1 181 FalgqlaysltllllyyvdflknlkkkkkfslkltkiklkeekksyyfdkdllelfkkvffqlilKhlLteGdkliisllctveeQGiYalvsnyGSLv 279
                 Falgql+y+++ll++y+++ +  +  +  fsl ++ ++++ +  + y+ + +l+l+ +++ q+++KhlLt+Gd ++isl++t+e QG Yal++nyG+L+
  CCE29534.1 247 FALGQLTYGTALLVVYLISGYGLAS-SCGFSLLPHPVSTDGDFIASYLYRPTLRLAGSMMAQSLFKHLLTQGDTFLISLFSTPEIQGNYALANNYGGLI 344
                 ********************88877.889*********999999999**************************************************** PP

       Rft-1 280 aRlvfaPiEEslrlffakll.....................sskkskknlkesvevLlnllklylylsllivifGpsyssflLqlliGskwsstsvldl 357
                 aRl+f+P+EEs+r +f++ll                      ++  + ++ke+ + + +l++lyl+ls ++v++Gp++s+ l+ l++G++w+ +++ ++
  CCE29534.1 345 ARLLFQPVEESSRSYFSNLLsrasfsaprgadaaaasaakdDQEIPSPEVKEARQSFRTLTRLYLILSAVVVAIGPFASPSLIALVAGRRWALEGAGHV 443
                 ******************************9999998876555567889************************************************** PP

       Rft-1 358 lrvYclyipllalNGilEaFvqsvassaqllkqsylmvvfSvvfllasyllievlklgaeGlilaNivNmllRiiyslrfikkfykklklekslrellp 456
                 l vYc+yip+lalNGi+E+Fv+svas+a++++qs +m +fS++f+++++++++++ lga+Gl+laNivNm +Ri++s+ f++ +++k+k++++l++++p
  CCE29534.1 444 LGVYCFYIPFLALNGITESFVASVASEADVHRQSLWMGAFSLAFAASAFIFMHMFPLGAQGLVLANIVNMNCRIVWSFAFVQAYFRKNKVDMPLKSIIP 542
                 *************************************************************************************************** PP

       Rft-1 457 salvvalllvsliigyv....velsknllqlligillalllllaillkerellkell 509
                 ++++ ++l++++++  +       s+ +  l+  ++ a++ll ai++ er+++ +++
  CCE29534.1 543 AGTIALALSTLVMLYRLdileRGISDPVITLIKLAAYAVALLSAIAMLERAFFYDCF 599
                 ***999999988866668998788999999999999***************988776 PP

>> Polysacc_synt  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.7    0.0058        26       1      37 [.      50      86 ..      50     116 .. 0.85
   2 !   42.9   2.4   8.2e-15   3.7e-11      55     263 ..     124     353 ..     121     363 .. 0.79
   3 ?   -4.7   4.7       2.8   1.2e+04     142     196 ..     477     532 ..     407     593 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0058
  Polysacc_synt  1 llkgvivlllsqlitkllafvtlvylarilgpegfGl 37
                   +++g++ l+l q++++l+ fv   +l r+l++   Gl
     CCE29534.1 50 VVRGASLLILLQVTSRLVTFVANQLLLRYLTAPLLGL 86
                   589***************************9877666 PP

  == domain 2  score: 42.9 bits;  conditional E-value: 8.2e-15
  Polysacc_synt  55 Glnaalvreiakyrekkelvslillnvllvllvlvllfllllliaa.flglpelavlylilalmll.llvgvasf....rrglfqglermkyaavs 144
                    G +aa ++++a +r+++ +v+l++l++ l++ v++ l    l++a+ + + ++ +++ l+ al+l+ ++ ++ ++    ++ ++++l + + a+ +
     CCE29534.1 124 GKDAAKSQQQAASRDDQAIVNLGFLAIGLGIFVSIGLG--WLYLAHgVSDSTRQTTPHLTTALYLYgIASFIELLsepcFVLMQTRLAFGTRATAE 217
                    668899*******************9988888777665..55555556666666666666666666555555443222299*************** PP

  Polysacc_synt 145 qvveqlsrvilvliavflfld.....ivaavlgavlaalvggivslavlrkkfr.................prfvilslklvrellsfsapltiss 218
                    +v+++l+ ++ v++av+  +      ++  +lg++ +  + ++v+l+  +   +                  +f  +   l r +l+ +  +++ s
     CCE29534.1 218 SVATFLRCIVVVGSAVWASGRgvslgLLPFALGQLTYGTALLVVYLISGY---GlasscgfsllphpvstdGDFIAS--YLYRPTLRLAGSMMAQS 308
                    ********************987777666666666555555444444444...2456788899999*9965555555..9**************** PP

  Polysacc_synt 219 laillytyidsillglllgaeavGiYnaayqllvaisgllapivt 263
                    l+  l+t+ d++l++l++ +e  G+Y +a+++  +i +ll+ +v 
     CCE29534.1 309 LFKHLLTQGDTFLISLFSTPEIQGNYALANNYGGLIARLLFQPVE 353
                    *************************************99998876 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 2.8
  Polysacc_synt 142 avsqvveqlsrvilvliavflfld.ivaavlgavlaalvggivslavlrkkfrprf 196
                    ++++ + +l++++  +i++ +f     ++vl+  + +  +++ s+a++  +fr+++
     CCE29534.1 477 SLWMGAFSLAFAASAFIFMHMFPLgAQGLVLANIVNMNCRIVWSFAFVQAYFRKNK 532
                    44445555555555555554443335555556666666666666666666665444 PP

>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3      0.21   9.2e+02      72     105 ..      50      83 ..      47     112 .. 0.73
   2 ?   -2.6   0.4      0.86   3.9e+03      76     103 ..     180     206 ..     140     229 .. 0.53
   3 !   19.0   0.3   1.9e-07   0.00085      64     138 ..     393     467 ..     387     473 .. 0.94
   4 ?   -1.5   0.3      0.38   1.7e+03      28      47 ..     480     499 ..     473     504 .. 0.73
   5 ?    2.9   0.8     0.017        75      75     125 ..     539     594 ..     536     606 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.21
        MatE  72 lrqglilllllsliiallvllfseqilslftqde 105
                 +++g  ll+ll +   l++++  + +l+++t++ 
  CCE29534.1  50 VVRGASLLILLQVTSRLVTFVANQLLLRYLTAPL 83 
                 6778888999999999998888888888887654 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.86
        MatE  76 lilllllsliiallvllfseqilslftq 103
                 l ++l l+ i++++  l+se+ + l+++
  CCE29534.1 180 LTTALYLYGIASFI-ELLSEPCFVLMQT 206
                 33344444444444.5666666655555 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 1.9e-07
        MatE  64 nfkrakealrqglilllllsliiallvllfseqilslftqdeevlelakrylrililgipalalqlvlsgilrga 138
                  +k+a++++r+ + l l+ls+++++++ + s+ ++ l+      le a + l +++++ip+lal+ ++ +++ ++
  CCE29534.1 393 EVKEARQSFRTLTRLYLILSAVVVAIGPFASPSLIALVAGRRWALEGAGHVLGVYCFYIPFLALNGITESFVASV 467
                 5799***************************************************************99998765 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.38
        MatE  28 lAavsialsilsllfvfllg 47 
                 ++a s+a+  + ++f+ ++ 
  CCE29534.1 480 MGAFSLAFAASAFIFMHMFP 499
                 67788888888888886664 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.017
        MatE  75 glilllllsliiallvllfseqilslftqdee.....vlelakrylrililgipal 125
                 ++i +  ++l+++ lv+l++ +il    +d+      ++++a  +l+++++ + a+
  CCE29534.1 539 SIIPAGTIALALSTLVMLYRLDILERGISDPVitlikLAAYAVALLSAIAMLERAF 594
                 56778899***********************9886666777777777777665555 PP

>> Polysacc_synt_3  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.9   1.9e-05     0.083      79     243 ..     178     363 ..     128     368 .. 0.64
   2 ?   -4.0   5.0       1.4   6.5e+03     119     163 ..     482     526 ..     393     559 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
  Polysacc_synt_3  79 pelvtvlrvlalvlilsglssvqeallrrelkFkklfkitlvssvvgvivaivlAllg......lgvwALvigtllssllslvllwla.skwr. 164
                      p+l t l + ++  +++ ls     l++ +l F + + ++ v++++ +iv +  A++       lg+  +++g+l++ +  lv+++++ +    
       CCE29534.1 178 PHLTTALYLYGIASFIELLSEPCFVLMQTRLAFGTRATAESVATFLRCIVVVGSAVWAsgrgvsLGLLPFALGQLTYGTALLVVYLISgYGLAs 271
                      5566666666666666666666666666666666666666666666666666555543111111233445555555554444443332111111 PP

  Polysacc_synt_3 165 ............prlkfsl.kslkelfsfglklllsnllnylarnldnlliGkvlssaaLGlYsvakrlaslpvaeitsviakVlfPalSrl 243
                                   +  f      +++++    +++++l + l ++ d++li  + + +  G Y+ a+++  l+   + +++++   + +S+l
       CCE29534.1 272 scgfsllphpvsTDGDFIAsYLYRPTLRLAGSMMAQSLFKHLLTQGDTFLISLFSTPEIQGNYALANNYGGLIARLLFQPVEESSRSYFSNL 363
                      1222232211112222222134588999*****************************************************99999988875 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.4
  Polysacc_synt_3 119 lvssvvgvivaivlAllglgvwALvigtllssllslvllwlaskw 163
                       +s ++++ + i + ++ lg+  Lv+ ++++  +++v ++ +++ 
       CCE29534.1 482 AFSLAFAASAFIFMHMFPLGAQGLVLANIVNMNCRIVWSFAFVQA 526
                      334455556667788888888888888888888887777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4058.67
//
Query:       CCE29535.1  [L=591]
Description: uncharacterized protein CPUR_03382 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00028   21.1   0.0     0.0045   17.2   0.0    2.5  1  RGS       Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.5e-07    0.0045      19     112 ..     386     563 ..     368     565 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.5e-07
                 HHHTTCTHHHHHHHHHHHHHTS...............SHHHHHHHHHHHHHHHHTSTTST.TSSTS-HHHHHHHHHHHCSS.................. CS
         RGS  19 lesefseenlsFwlaveefkka...............keqeelkkkakeIyneylapssp.kelnidkklreelekrleke.................. 83 
                 l++ fs en++F+  v e+k++               +  +e+ + a +Iy+e++  + +   +ni++    +le+ +e                    
  CCE29535.1 386 LRD-FSGENVAFLTSVAEWKASlpkpardgtkdestrELVRERYNSALRIYSEFIGINDAeFPINISSPELRKLETIFESParalygnkrkvdpatpfd 483
                 444.899**************************9888888899999*********765552677******99***999998888888888888888888 PP

                 ...................................................STTTTTTHHHHHHHHHHHHHHHHHHHHTS CS
         RGS  84 ...................................................qpsrklfeeaqeevfellekdsypkFlks 112
                                                                      + ++f+e +++v  l  ++ +pkF+k+
  CCE29535.1 484 fgsagavpnsatsvekspittkerlndgsendvdldqergdgvqfwgeipeAFDGTVFDESEKHVKYLVLTNTWPKFVKD 563
                 88888888888888888888888888888888888888888888888888777778888888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4225.98
//
Query:       CCE29536.1  [L=185]
Description: uncharacterized protein CPUR_03383 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-06   28.7   0.0    1.4e-06   28.3   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.4e-06   28.5   0.1    1.8e-06   28.2   0.1    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    7.3e-06   26.3   0.0    1.4e-05   25.4   0.0    1.5  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   2.4e-10   1.4e-06      37     111 ..      76     157 ..      35     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 2.4e-10
  Acetyltransf_10  37 eeggkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikl..eltvnasp.yavpfYeklGFkavge 111
                      +++  +vG++e+  +++   + +l++Vdp+ +  G+gk++l ++e  a+++ +    e+ v  ++ + ++ Y + G++ +++
       CCE29536.1  76 DDDPALVGCCEIeAREDgigYFGLFAVDPKRQAGGLGKKILAQAEIMAREELGVRtmEMFVIWTRkELIAWYVRRGYVLTER 157
                      4557899***995444479****************************7655444359999999998***********98865 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1     3e-10   1.8e-06      41     117 .]      72     152 ..      23     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 3e-10
                     T......TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  41 d......geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklGF 117
                     +      + l+G++ +  + d   g +y   +aV+p+++  GlG++ l ++e  aree g++ ++  v  + +  i+ Y + G+
      CCE29536.1  72 EhtsdddPALVGCCEIEARED---GIGYFGLFAVDPKRQAGGLGKKILAQAEIMAREElGVRTMEMFVIWTRKELIAWYVRRGY 152
                     323433377************...*************************************99977676667777999988887 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.4e-09   1.4e-05       5      75 ..      67     153 ..      63     154 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.4e-09
                     EEEEEET.....TEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH.....TT.SEEE......EE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7   5 vfVaedd.....gkivGfialslld...aeitrlaVdpeyrgkGiGraLlea.....ae.kgii......le.qlelnaekaikfYeklGFe 75 
                     v+Va++         vG++ ++ ++   ++ + +aVdp+ +  G+G+++l+      +e  g++      ++ +      + i++Y + G++
      CCE29536.1  67 VLVAHEHtsdddPALVGCCEIEAREdgiGYFGLFAVDPKRQAGGLGKKILAQaeimaREeLGVRtmemfvIWtRK-----ELIAWYVRRGYV 153
                     6666555666557778999999888655555559****************8434443114554343333223223.....4488******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1286.34
//
Query:       CCE29537.1  [L=619]
Description: uncharacterized protein CPUR_03384 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        42  (0.00234257); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.51
# Mc/sec: 3641.55
//
Query:       CCE29538.1  [L=331]
Description: uncharacterized protein CPUR_03385 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2500.68
//
Query:       CCE29539.1  [L=243]
Description: uncharacterized protein CPUR_03386 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.21   10.7   0.0       0.28   10.3   0.0    1.2  1  Effector_1  Effector from type III secretion system


Domain annotation for each model (and alignments):
>> Effector_1  Effector from type III secretion system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.5e-05      0.28     126     165 ..     124     165 ..      58     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 1.5e-05
  Effector_1 126 qeefLeklaselsf..snkaasllndileliksFvnaavyyn 165
                 ++ fL +l+s++++   n+a ++ n  + +++ F+  ++yyn
  CCE29539.1 124 DVVFLMELISDVNYipPNFATEVQNLAVGAVQDFSEENIYYN 165
                 5679**********666************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1960.42
//
Query:       CCE29540.1  [L=147]
Description: uncharacterized protein CPUR_03387 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1193.04
//
Query:       CCE29541.1  [L=630]
Description: uncharacterized protein CPUR_03388 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4715.89
//
Query:       CCE29542.1  [L=434]
Description: uncharacterized protein CPUR_03389 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3184.21
//
Query:       CCE29543.1  [L=295]
Description: uncharacterized protein CPUR_03390 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2122.08
//
Query:       CCE29544.1  [L=239]
Description: uncharacterized protein CPUR_03391 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1793.56
//
Query:       CCE29545.1  [L=425]
Description: uncharacterized protein CPUR_03392 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3063.73
//
Query:       CCE29546.1  [L=453]
Description: probable DFG5 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.1e-145  484.3   7.9   3.5e-145  484.1   7.9    1.0  1  Glyco_hydro_76  Glycosyl hydrolase family 76


Domain annotation for each model (and alignments):
>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  484.1   7.9    2e-149  3.5e-145       2     365 ..      18     398 ..      17     399 .. 0.97

  Alignments for each domain:
  == domain 1  score: 484.1 bits;  conditional E-value: 2e-149
                     XHHHHHHHHHHHHHHCETTECCTCTCBSCES.......-GHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHCCCTCEE-SSSTTCTCSSEHHHH CS
  Glyco_hydro_76   2 iksaaatiakgllkyYkgnesggtpgnlpdp.......yywWeagalfgalidywrltgdstyndlitqallaqagenydympanqsrtegnDDq 89 
                     i+++++t+a++l+  Ykgn+sg++pg+lp p       yywWe ga++g+ idyw+ltgdstyn+++ q++l+q gen++ymp+n+++++gnDDq
      CCE29546.1  18 IRASSQTLAYDLMLQYKGNQSGEIPGILPGPpadgkgpYYWWEGGAMMGTYIDYWKLTGDSTYNKVVIQGMLHQVGENKNYMPSNHTMSLGNDDQ 112
                     5678899*********************9999999999********************************************************* PP

                     HHHHHHHHHHHHH......H--HHHHHHHHHHHHHHHH..CB-SCSCCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHHHHHH--CHHHHHHHH CS
  Glyco_hydro_76  90 afwglaamtaaernfpep.tdepswLalAqavfntqas..rwdeetcgGGlrWqiftwnsgydyknsisngplfqlaarLarytgnetYlewAek 181
                     +fwgl+am aae++fp+p td+p+wLalAqav+ntqa+  r+d++ cgGGlrWqi   n+gy ykn+i+ng++f+++arLaryt+n+tY++ Ae+
      CCE29546.1 113 GFWGLSAMLAAENKFPDPpTDQPQWLALAQAVWNTQADpsRYDKT-CGGGLRWQIPFSNQGYGYKNTIANGIFFNMGARLARYTKNDTYAQRAEE 206
                     *************************************86679886.*********8889************************************ PP

                     HHHHHHHHSCSBTTTS-B-SEEETTTCCEEEE---HHHHHHHHHHHHHHHHHHH.--HHHHHHHHHHHHHHHHHCEECTTEEEEEE-TT...STT CS
  Glyco_hydro_76 182 vwdWvedvgliddedwlvyDgasvednctdinklqwtYnqGtylsgaaylynaT.gdekWldrvkgllnatlstffpdgnilyevacep...sek 272
                      wdW++d ++id+++w  yDga+v++nctd+nk++++Yn+G++++gaa++yn+T g++kW++ v+gll  tl+ ffp+ +i yev ce+   + +
      CCE29546.1 207 AWDWMWDRNYIDHKTWAAYDGAHVDKNCTDVNKATFSYNAGVLVQGAAFMYNYTdGNAKWKTAVDGLLGYTLKNFFPN-GIAYEVPCEGsngKGT 300
                     ******************************************************************************.*********9999889 PP

                     CCTTHHHHHHHHHHHHHHHH..SHHHHHHHHHHHHHHHHHHHTTTB...TTTSB-TTTTTSS.....CCHHHHHHHHCCHHH............H CS
  Glyco_hydro_76 273 cnnDqrsFkgilarwlaltaqlapetadtiepllrasaeaaakscsggsdgttcglkwlkgt.....wdgdaglgeqmsaleviqallveekkap 362
                     c+ D+ sFkg+++rwl+ ++q+ap+t++ti p lr+s+eaa+k+c+gg++g++cg+ w  g+     +d+++g+ge m++l+++++ll++e  +p
      CCE29546.1 301 CTPDMLSFKGYVHRWLSVITQVAPYTRETILPILRKSTEAAVKQCTGGQTGRQCGFYWNLGKfvdpaVDRTTGAGEVMNVLAAVSSLLIDETGPP 395
                     ***********************************************************98889999************************9888 PP

                     HHH CS
  Glyco_hydro_76 363 lta 365
                     +t+
      CCE29546.1 396 VTN 398
                     875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3507.42
//
Query:       CCE29547.1  [L=352]
Description: uncharacterized protein CPUR_03394 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2625.12
//
Query:       CCE29548.1  [L=521]
Description: uncharacterized protein CPUR_03395 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4074.10
//
Query:       CCE29549.1  [L=150]
Description: uncharacterized protein CPUR_03396 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1172.41
//
Query:       CCE29550.1  [L=186]
Description: uncharacterized protein CPUR_03397 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-05   22.0   0.8    0.00018   21.2   0.8    1.5  1  HTH_38      Helix-turn-helix domain
  ------ inclusion threshold ------
      0.023   15.3   0.1       0.54   10.9   0.0    2.4  2  HTH_32      Homeodomain-like domain
       0.11   12.6   0.5        0.2   11.7   0.0    1.8  2  PT-VENN     Pre-toxin domain with VENN motif


Domain annotation for each model (and alignments):
>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.8   3.1e-08   0.00018       2      32 ..       3      34 ..       2      44 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.1e-08
      HTH_38  2 ykhLsleeReeIerl.laeGlslreIArrLgr 32
                +khL+ ++R eI +l   +Gls+++IA r g+
  CCE29550.1  3 RKHLTEAQRAEIRTLsFTAGLSNAQIAGRTGY 34
                79*************66**********99887 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.045   2.7e+02      26      56 ..       4      32 ..       2      44 .. 0.71
   2 ?   10.9   0.0   9.1e-05      0.54      21      54 ..      50      86 ..      32     105 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.045
      HTH_32 26 prklsdevrariiallreeprWsprqlaarl 56
                +  l++++ra+i+ l      +s  q+a+r 
  CCE29550.1  4 K-HLTEAQRAEIRTLS-FTAGLSNAQIAGRT 32
                3.399*******9998.33377777777765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 9.1e-05
      HTH_32 21 prrgrprklsdevrariiallreep....rWsprqlaa 54
                 r grp+ ls e+++++++ ++  +     +s+ +l+ 
  CCE29550.1 50 VRTGRPPALSTEQQQELVEFVT-GSkknrSMSYLELST 86
                6889***************994.322334555555555 PP

>> PT-VENN  Pre-toxin domain with VENN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.4e-05       0.2       2      29 ..       4      37 ..       3      54 .. 0.77
   2 ?   -3.5   0.1       1.9   1.2e+04       4      13 ..      58      67 ..      57      71 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.4e-05
     PT-VENN  2 seLteeEKqtvsalstlaaGlaGgvvg......g 29
                ++Lte+++ ++ +ls  a+   ++++g      g
  CCE29550.1  4 KHLTEAQRAEIRTLSFTAGLSNAQIAGrtgygiG 37
                68*******************9999995555551 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.9
     PT-VENN  4 LteeEKqtvs 13
                L+ e+ q++ 
  CCE29550.1 58 LSTEQQQELV 67
                7888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1734  (0.0967148); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 1508.30
//
Query:       CCE29551.1  [L=558]
Description: related to GDP/GTP exchange factor for Gsp1p/Gsp2p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-55  183.8  22.4    7.9e-09   36.0   0.1    8.1  7  RCC1      Regulator of chromosome condensation (RCC1) repeat
    2.3e-36  122.9  30.3    1.7e-07   30.9   0.2    7.7  8  RCC1_2    Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   8.3e-11   7.4e-07       4      50 .]     129     181 ..     128     181 .. 0.88
   2 !   28.3   0.0   2.2e-10     2e-06       2      50 .]     185     257 ..     184     257 .. 0.67
   3 !   20.2   2.0   7.6e-08   0.00068       1      50 []     260     315 ..     260     315 .. 0.70
   4 !   36.0   0.1   8.8e-13   7.9e-09       2      50 .]     319     370 ..     318     370 .. 0.89
   5 !   29.5   0.3   9.4e-11   8.4e-07       2      50 .]     374     427 ..     373     427 .. 0.85
   6 !   29.7   0.0   8.1e-11   7.3e-07       1      50 []     430     495 ..     430     495 .. 0.73
   7 !   18.9   0.1     2e-07    0.0018       7      50 .]     504     549 ..     499     549 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 8.3e-11
                 EEEEE--GGGTTSSSS-.--EEEEEE-GGGTTS.....-EEEEEEETTEEEEE CS
        RCC1   4 VysWGrndyGqLGlgtt.esvlvPtkveglsgn.....rvvkvacGddhtval 50 
                 V+++G+++ G LGlg++  ++++P+  + l+ n     +vv+ acG+ ht++l
  CCE29551.1 129 VFACGSGECGELGLGPSrTTSTIPRMNMALDPNdktkhHVVQLACGGMHTIVL 181
                 9****************766689*8887777677889*************986 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 2.2e-10
                 TEEEEEE--GGGTTSS.................SS---E........EEEEE-...GGGTTS-EEEEEEETTEEEEE CS
        RCC1   2 GrVysWGrndyGqLGl.................gttesv........lvPtkv...eglsgnrvvkvacGddhtval 50 
                  ++++WG nd+G LG+                      +          P++v    +++g+ +++va+Gd+ +++l
  CCE29551.1 185 NKILTWGVNDEGALGRdttwdgglkdmdadnseE----EdgdlnpheCSPVEVpskHFPDGTVFTQVAAGDSCSFVL 257
                 6799************666666665555544430....144444333226666443377777*************97 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 7.6e-08
                 TTEEEEEE.....--GGGTTSSSS-...--EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWG.....rndyGqLGlgtt...esvlvPtkveglsgnrvvkvacGddhtval 50 
                 +G+Vy+WG     ++d+  +  ++    e +  P +v+ l+  +vv++acG++h +al
  CCE29551.1 260 SGHVYGWGafrdnKGDRRFCYDKDGkvvEIQKEPILVPALE--HVVQIACGANHALAL 315
                 599999998844444444443333334533366********..************997 PP

  == domain 4  score: 36.0 bits;  conditional E-value: 8.8e-13
                 TEEEEEE--GGGTTSSSS-...--E.EEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   2 GrVysWGrndyGqLGlgtt...esv.lvPtkveglsgnrvvkvacGddhtval 50 
                 G++++WG+ +++qLG+++    +s+ l+P++v+  + ++++ +a+G +h++a+
  CCE29551.1 319 GQIWGWGSYEQNQLGRQPFgrfQSEtLLPRQVRVCT-RPIKYIASGEFHSFAV 370
                 9***************999886444588******98.5*************96 PP

  == domain 5  score: 29.5 bits;  conditional E-value: 9.4e-11
                 TEEEEEE--GGGTTSS.....SS---E.EEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   2 GrVysWGrndyGqLGl.....gttesv.lvPtkveglsgnrvvkvacGddhtval 50 
                 ++V+sWG n++G  G      g++  v ++P+k++gl g+ v+++a G++h++a+
  CCE29551.1 374 DDVWSWGLNSFGEAGYakqagGDQA-VlPHPMKIPGLCGKGVTQMAGGSHHSAAV 427
                 58**************665533334.3599***********************96 PP

  == domain 6  score: 29.7 bits;  conditional E-value: 8.1e-11
                 TTEEEEEE--GGGTTSS.............SS---E.........EEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGl.............gttesv.........lvPtkveglsgnrvvkvacGddhtval 50 
                 +G+ + WGr d GqLG+                  +         l Pt+v+g     v  vacG dht+++
  CCE29551.1 430 EGQCFVWGRLDGGQLGIefskeqleddtliR----HdeydkpricLRPTEVPGVG--LVETVACGTDHTIFI 495
                 79***************88766554322221....1334334344459*****98..9***********987 PP

  == domain 7  score: 18.9 bits;  conditional E-value: 2e-07
                 EE--GGGTTSSSS---EEE..EEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   7 WGrndyGqLGlgttesvlv..PtkveglsgnrvvkvacGddhtval 50 
                  G+++ GqLGl ++++v++  P++ +  +g++ + +a+G+++++++
  CCE29551.1 504 TGFGSVGQLGLRHEDDVNTvqPMQGKDIKGRKLIGAAAGGQFSIVM 549
                 699***********7775557**********************975 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.023     2e+02      20      29 ..     129     138 ..     128     139 .. 0.90
   2 !   27.4   0.2   2.3e-10   2.1e-06       1      29 [.     168     196 ..     168     197 .. 0.96
   3 !   22.0   0.6   1.1e-08   9.9e-05       2      27 ..     245     272 ..     244     275 .. 0.86
   4 !   30.9   0.2   1.9e-11   1.7e-07       1      25 [.     302     326 ..     302     334 .. 0.89
   5 !   30.1   0.0   3.2e-11   2.9e-07       2      29 ..     358     385 ..     357     386 .. 0.93
   6 !   16.2   0.7   7.4e-07    0.0067       1      25 [.     414     438 ..     414     443 .. 0.92
   7 !   12.1   0.1   1.4e-05      0.13       1      30 []     482     511 ..     482     511 .. 0.90
   8 ?   -1.9   0.0      0.36   3.3e+03       5      15 ..     540     550 ..     539     553 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.023
      RCC1_2  20 VlcWGsNsdG 29 
                 V+++Gs ++G
  CCE29551.1 129 VFACGSGECG 138
                 9********9 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 2.3e-10
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdG 29 
                 V+++++G+ H+++Lt+d+++l+WG N+ G
  CCE29551.1 168 VVQLACGGMHTIVLTADNKILTWGVNDEG 196
                 89************************988 PP

  == domain 3  score: 22.0 bits;  conditional E-value: 1.1e-08
      RCC1_2   2 ksvsaGdyHscaLtedGeVlcWG..sNs 27 
                 ++v+aGd+ s++Lt++G+V++WG  +++
  CCE29551.1 245 TQVAAGDSCSFVLTASGHVYGWGafRDN 272
                 69*********************55444 PP

  == domain 4  score: 30.9 bits;  conditional E-value: 1.9e-11
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGs 25 
                 V+++++G++H++aL+  G +++WGs
  CCE29551.1 302 VVQIACGANHALALDKAGQIWGWGS 326
                 89**********************6 PP

  == domain 5  score: 30.1 bits;  conditional E-value: 3.2e-11
      RCC1_2   2 ksvsaGdyHscaLtedGeVlcWGsNsdG 29 
                 k +++G +Hs+a+++ ++V++WG Ns+G
  CCE29551.1 358 KYIASGEFHSFAVDRKDDVWSWGLNSFG 385
                 669************************9 PP

  == domain 6  score: 16.2 bits;  conditional E-value: 7.4e-07
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGs 25 
                 V++++ G+ Hs a+t++G  + WG+
  CCE29551.1 414 VTQMAGGSHHSAAVTSEGQCFVWGR 438
                 7899********************6 PP

  == domain 7  score: 12.1 bits;  conditional E-value: 1.4e-05
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 V+ v++G +H++++t +G  l++G  s+GQ
  CCE29551.1 482 VETVACGTDHTIFITKEGVGLATGFGSVGQ 511
                 789***************988888888888 PP

  == domain 8  score: -1.9 bits;  conditional E-value: 0.36
      RCC1_2   5 saGdyHscaLt 15 
                 +aG+ +s++++
  CCE29551.1 540 AAGGQFSIVMS 550
                 79*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       970  (0.0541023); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.40
# Mc/sec: 4164.56
//
Query:       CCE29552.1  [L=212]
Description: related to E.coli galactoside O-acetyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-16   59.1   0.0    5.7e-16   58.5   0.0    1.3  1  Mac        Maltose acetyltransferase
    3.7e-14   51.8   6.2    1.9e-11   43.2   2.5    3.1  2  Hexapep    Bacterial transferase hexapeptide (six repeats)
    3.8e-11   42.5   2.9      1e-08   34.7   1.9    2.7  2  Hexapep_2  Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Mac  Maltose acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   9.6e-20   5.7e-16       1      53 []      29      86 ..      29      86 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 9.6e-20
                HHHTTS-BETTTSHHHHHHHHHHHHHHHHHHTSTTT-HHH......HHHHHHHHSSBES CS
         Mac  1 KMlaGelYdafsDpeLvaeRlrarelcrryNqtrpsdkde......RrelLrellGsvG 53
                KM++G+lYd+   peLv+ R+rar+l+r+yN+ +p+d  +      R+++L+++lG vG
  CCE29552.1 29 KMISGQLYDCLV-PELVDGRFRARRLTRKYNSHFPDDATAaslcadRQAMLEQILGRVG 86
                9*********85.*******************778888888999999*********998 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1   0.00027       1.6      20      34 ..     116     130 ..      84     132 .. 0.79
   2 !   43.2   2.5   3.2e-15   1.9e-11       1      36 []     151     186 ..     151     186 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00027
                 EEE-TTEEEETTEEE CS
     Hexapep  20 VkIGdnvkIgagvvi 34 
                 VkIG++v  g++v i
  CCE29552.1 116 VKIGNRVMFGPFVSI 130
                 888888888888876 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 3.2e-15
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 s+ IG++++Ig +++i+++V+IG++++Ig+ +v+++
  CCE29552.1 151 SVEIGDDCWIGGNTTIMPGVTIGKGCTIGSSSVVTR 186
                 689******************************985 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0019        11       2      15 ..     116     129 ..     116     134 .. 0.88
   2 !   34.7   1.9   1.8e-12     1e-08       2      34 .]     152     186 ..     151     186 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0019
                 EEE-TT-EE-TT-E CS
   Hexapep_2   2 viIGdnCliGanag 15 
                 v+IG+++++G++  
  CCE29552.1 116 VKIGNRVMFGPFVS 129
                 89*********965 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 1.8e-12
                 EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE-S CS
   Hexapep_2   2 viIGdnCliGanagi..GvslGdncvvgaGvvita 34 
                 v IGd+C iG n +i  Gv++G++c++g+ +v+t+
  CCE29552.1 152 VEIGDDCWIGGNTTImpGVTIGKGCTIGSSSVVTR 186
                 78************99****************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1638.91
//
Query:       CCE29553.1  [L=493]
Description: uncharacterized protein CPUR_03400 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.53    8.6   3.5       0.65    8.3   0.0    2.1  2  SID-1_RNA_chan  dsRNA-gated channel SID-1


Domain annotation for each model (and alignments):
>> SID-1_RNA_chan  dsRNA-gated channel SID-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   3.6e-05      0.65     381     444 ..     114     177 ..     109     234 .. 0.89
   2 ?    0.5   1.2    0.0084   1.5e+02     477     508 ..     365     395 ..     265     432 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 3.6e-05
  SID-1_RNA_chan 381 aysafallavvillgvigvlegknkfwilfsiihllatlllslqiyymgrwkldvgilrrilev 444
                     +y a  +l+++i+++v g++ +k k+w+l +++  la+ +l + + + ++ k +v ++r+++  
      CCE29553.1 114 RYFAVRCLVLTIVTAVFGFVMTKGKVWFLNAVLFALAVDYLLAGLLWLAMAKTEVLLTRSLVWA 177
                     689999***********************99999999999999999999999888888877654 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.0084
  SID-1_RNA_chan 477 vlglvlkpkdfasylLaifivnlllYlvfYii 508
                     ++++v+ p d+a  l + + +nll+  +fY+i
      CCE29553.1 365 FFYIVKYPPDVAF-LAFTMACNLLILAFFYAI 395
                     3444444444442.224445555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3600.84
//
Query:       CCE29554.1  [L=301]
Description: uncharacterized protein CPUR_03401 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-08   34.2   1.3    6.2e-06   26.0   0.1    2.5  2  Chromo    Chromo (CHRromatin Organisation MOdifier) domain
  ------ inclusion threshold ------
       0.41    9.3   6.7       0.46    9.1   6.7    1.1  1  Ndc1_Nup  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.2   0.00076       6.8      31      53 ..     204     226 ..     184     227 .. 0.83
   2 !   26.0   0.1   6.9e-10   6.2e-06      10      53 ..     248     289 ..     242     290 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00076
                 GTEEEEGGGCSSHSHHHHHHHHH CS
      Chromo  31 entWEpeenlekcfqelideFkk 53 
                 + tWE e+ l +++++++  ++k
  CCE29554.1 204 DLTWEREAVLHEDAPDALLDYWK 226
                 55***********9999999987 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 6.9e-10
                 EEETTEECEEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHH CS
      Chromo  10 rtdkdgleleYlVKWkglpysentWEpeenlekcfqelideFkk 53 
                 +  kd++    lV W g+ ++e++W p +++ek ++el+ ++++
  CCE29554.1 248 KHTKDRK--SLLVEWVGYGPKEASWLPHAEVEKTAPELVAQYWR 289
                 3445555..78*******************************97 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   6.7   5.2e-05      0.46     365     466 ..      26     116 ..       9     223 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 5.2e-05
    Ndc1_Nup 365 apknkasapvkelprlsksplkkk.ddeifgnsltaeaspkssssskegvekalsslakspgqspsptarlsprarkllekaksrlls.keqkealses 461
                    ++a+ p k+++r+s  p++++ ++ +  +   +++ pk++s ++++++++++++aksp   ++p+++++       +k +++ ++ + ++ a +++
  CCE29554.1  26 Y-PKSAPLPPKRTKRTSL-PENQTrRSML--SLEVSNNGPKPTSPKSQETRSTVQAPAKSPA--KPPAKKVA-------KKPAKKIVKkPVKQPAKTAK 111
                 2.2233344445555542.2223222222..2344456777777788888888888898886..33333333.......22222222212222222222 PP

    Ndc1_Nup 462 tikkk 466
                 +  k+
  CCE29554.1 112 QLAKQ 116
                 22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1068  (0.0595683); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2173.03
//
Query:       CCE29555.1  [L=320]
Description: uncharacterized protein CPUR_03402 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2248.46
//
Query:       CCE29556.1  [L=435]
Description: uncharacterized protein CPUR_03403 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3140.93
//
Query:       CCE29557.1  [L=300]
Description: uncharacterized protein CPUR_03404 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.9   0.0       0.23   11.9   0.0    1.5  1  Tfb2_C    Transcription factor Tfb2 (p52) C-terminal domain


Domain annotation for each model (and alignments):
>> Tfb2_C  Transcription factor Tfb2 (p52) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.3e-05      0.23      26      57 ..     102     133 ..      97     140 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.3e-05
      Tfb2_C  26 sqadfeevleyakelgvllwedeekrllvvke 57 
                  ++d+++++e +k+l+++l +++e+r+++v++
  CCE29557.1 102 PAEDYQALAEQTKSLRAVLSTHRESRSIAVRK 133
                 5799**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2198.73
//
Query:       CCE29558.1  [L=388]
Description: uncharacterized protein CPUR_03405 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3071.67
//
Query:       CCE29559.1  [L=445]
Description: uncharacterized protein CPUR_03406 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3235.70
//
Query:       CCE29560.1  [L=471]
Description: uncharacterized protein CPUR_03407 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 3351.60
//
Query:       CCE29561.1  [L=580]
Description: uncharacterized protein CPUR_03408 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   14.5   0.0       0.15   12.3   0.0    2.1  1  RGS       Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.5e-06      0.15      22     110 ..     394     537 ..     374     540 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.5e-06
                 TTCTHHHHHHHHHHHHHTS.......SHHHHHHHHHHHHHHHHTSTTST.TSSTS-HHHHHHHHHHHCSS............................. CS
         RGS  22 efseenlsFwlaveefkka.......keqeelkkkakeIyneylapssp.kelnidkklreelekrleke............................. 83 
                  fs en++F+    +fk++       ++  ++ ++a  Iy  +++++ +   ln+ ++  +  e+ +e +                             
  CCE29561.1 394 DFSGENIAFLTRAARFKASwpvmpsgAQVLDVYNEALGIYTDFISTKDAeFPLNLASRDLKAQEDIFEYAarslmggsdanpatpfdveaprggflgns 492
                 4788********************999999**************7766524458877766666666666677888889999999999999999999999 PP

                 ..................STTTTTTHHHHHHHHHHHHHHHHHHHH CS
         RGS  84 ..................qpsrklfeeaqeevfellekdsypkFl 110
                                     s ++f++++++v  l  ++ +pkF+
  CCE29561.1 493 stasdifllvqyrgpvpdAFSLDVFDQIESHVKYLVLTNTWPKFV 537
                 999999999888888887778888888999988888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4013.90
//
Query:       CCE29562.1  [L=499]
Description: related to GIT1-Glycerophosphoinositol transporter also able to mediate low-affinity phosphate trans [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-42  144.9  25.2    2.5e-27   95.8   8.3    2.0  2  Sugar_tr  Sugar (and other) transporter
    2.6e-27   95.7  36.9    6.5e-16   58.2  13.4    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.4    8.7   5.1        3.4    7.5   0.3    2.5  2  MASE5     Membrane-associated sensor


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   8.3   4.2e-31   2.5e-27      10     198 ..      62     254 ..      50     262 .. 0.81
   2 !   56.1   8.5     5e-19     3e-15     253     449 ..     277     472 ..     252     475 .. 0.81

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 4.2e-31
                 HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT...SS-TGG CS
    Sugar_tr  10 llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk...nsvevl 105
                 +  gY+  +ig++  +l+   + + ++++ss       ++ + s+flvG+++G l++g+ +dr+GR+ ++l a+v++v g++l+ aa+gk    +++++
  CCE29562.1  62 FSDGYNAQMIGYMNPVLA---KLYPDEYDSS------MQSRMSSAFLVGEVFGMLLFGWTIDRLGRRTGILGATVCLVLGIILTTAAHGKtvnGQFWMM 151
                 445777777777777766...3444444443......346889*********************************************99**99***** PP

                 GGGHHHHHHHHHHHHHHHHHHHHTTS..-SCCHHHHHHH....HHHHHHHHHHHHHHHHHHH.HTSS-...TTHHHHHHHCCHHHHHHHHHHGGGS--- CS
    Sugar_tr 106 ivgRvlvGigvGlasvlvPmyisEiA..pkklRgalvsl....yqlaitfGilvaaifglgl.nktsn...adgwrillglqlvpallllilllflPES 194
                 i+gR ++G+g+G+++ ++ + + E A  ++klR++ + l    +++a+ +G++++ ++ + + + +++   +  wri +gl lv+++ +l+++l l +S
  CCE29562.1 152 IIGRAIAGVGAGGEYPVCATSATEAAdeTEKLRKRRGILasvgTEFAVDMGFILSGVIAVCViAAYGGhvsDGVWRISFGLGLVLPVSVLFFRLRLVNS 250
                 **************************886667655544411136788999*99988888877677776898889********************99999 PP

                 HHHH CS
    Sugar_tr 195 Pryl 198
                   y 
  CCE29562.1 251 TQYQ 254
                 8886 PP

  == domain 2  score: 56.1 bits;  conditional E-value: 5e-19
                 .HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHH....HHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS.. CS
    Sugar_tr 253 qrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfva....tfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakska 347
                    l ++++++++   G     ++++t++ +l  +  l+  i++g+v ++     t+++  l+dr+GR++++ lG++  +i+ +i+g  al +  +   
  CCE29562.1 277 GTSLSWFMYDFVTYPFG-----IFGSTVIASLNPEGNLIHDIGYGTVLILLylpgTIIGGHLMDRIGRKQTMALGFLLWSIMGFIIG-GALNQIVA--- 366
                 33566667777777777.....578888888888888888888888887752222677779*************************9.44444444... PP

                 .CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH.....T-HHHHHHHHHHHHHHHHHHHHS--ST CS
    Sugar_tr 348 asivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig.....ggyvflvfaglavlfiifvfffvpetk 441
                 +  +++v++a+f al +lg+g   ++ ++E fp+ vR+ +  +a+av  +   + +++f  i+ + +       +vf++ a++ + ++++ +f +p  k
  CCE29562.1 367 IFPLFVVLYAIFNALGELGPGVATFLCSTESFPTPVRGHFVGFAAAVGKVGAAIGTQVFIPIQASFSdtnkgVQGVFIIGAAFTLTGALISYFLIPD-K 464
                 69****************************************************999999999888889998899******************9997.8 PP

                 T--CCCCG CS
    Sugar_tr 442 grtleeie 449
                 gr+le+ +
  CCE29562.1 465 GRDLEDED 472
                 88888765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2  13.4   1.1e-19   6.5e-16       6     225 ..      62     296 ..      50     309 .. 0.72
   2 !   41.1  18.3   1.7e-14     1e-10      38     176 ..     316     465 ..     292     479 .. 0.74

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.1e-19
       MFS_1   6 flsalarsilgpalplalaedlg..ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa......sslwlllvlrvlq 95 
                 f  ++++ ++g + p  la+ +   ++ s ++ + +++ +g ++++l++G+ +dr+Grr  +l + ++++lg ++l+  a       ++w+++++r+++
  CCE29562.1  62 FSDGYNAQMIGYMNP-VLAKLYPdeYDSSMQSRMSSAFLVGEVFGMLLFGWTIDRLGRRTGILGATVCLVLG-IILTtAAhgktvnGQFWMMIIGRAIA 158
                 444555555555555.34333324477888888***************************************.55553444555666699********* PP

       MFS_1  96 Glgagalfpagaaliadwfpk.eergraigllsa.....gfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkr 181
                 G+gag+ +p++a+ +++ + + e+  +  g+l++     ++ +G+il  +++  +++++g       Wr +f +  ++ + +  lf+ l +++ ++ ++
  CCE29562.1 159 GVGAGGEYPVCATSATEAADEtEKLRKRRGILASvgtefAVDMGFILSGVIAVCVIAAYGghvsdgvWRISFGLGLVLPVSV--LFFRLRLVNSTQYQK 255
                 ********************95433333333333333556666666666666666656666**9999999999999999998..755666666666666 PP

       MFS_1 182 kspkeeekgtgpaplvp..awkallkdpvlwillialllfffgfsg 225
                  + k+      p  lv    w+ +l     w +++ +++  fg++g
  CCE29562.1 256 HAMKQH----IPYVLVVkrYWRPILGTSLSW-FMYDFVTYPFGIFG 296
                 666666....444444466777777777668.88888888777777 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 1.7e-14
       MFS_1  38 ltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fa...sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa.. 128
                  t+  l+++ +++++G+l+dr+Gr+ ++ lg+ll++++++++   +    + ++ ++++  ++ +lg+ +   a     ++ fp + rg  +g+++a  
  CCE29562.1 316 GTVLILLYLPGTIIGGHLMDRIGRKQTMALGFLLWSIMGFIIGgaLNqivAIFPlFVVLYAIFNALGELGPGVATFLCSTESFPTPVRGHFVGFAAAvg 414
                 466778999*****************************66666553134344664455555688888877777777778999***************55 PP

       MFS_1 129 ..gfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeep 176
                   g+++G+ +  ++ + ++ ++ g ++vf+i a+++l ++++ ++l+p++ 
  CCE29562.1 415 kvGAAIGTQVFIPIQASFSdTNKGVQGVFIIGAAFTLTGALISYFLIPDKG 465
                 556666664444555566668888*****************9777776654 PP

>> MASE5  Membrane-associated sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.3   0.00056       3.4      40      89 ..     227     276 ..     220     312 .. 0.77
   2 ?    2.5   0.7     0.019   1.1e+02      82     110 ..     347     375 ..     317     393 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00056
       MASE5  40 lieaaliallllsllllalalilsrqpealslslllvlllllsllWallg 89 
                  i   l ++l +s+l++ l+l+ s q +++ ++    ++l+++ +W  + 
  CCE29562.1 227 RISFGLGLVLPVSVLFFRLRLVNSTQYQKHAMKQHIPYVLVVKRYWRPIL 276
                 56666778999***********************************8653 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.019
       MASE5  82 sllWallgyylltseaqlplvepLldiLl 110
                  llW+++g+++  + +q+  ++pL+++L 
  CCE29562.1 347 FLLWSIMGFIIGGALNQIVAIFPLFVVLY 375
                 478********99999***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3415.85
//
Query:       CCE29563.1  [L=540]
Description: probable RCO3-probable glucose transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.7e-115  385.4  23.0   4.2e-115  385.2  23.0    1.0  1  Sugar_tr  Sugar (and other) transporter
    2.9e-20   72.5  63.8    1.3e-18   67.1  34.1    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  385.2  23.0  4.7e-119  4.2e-115       3     452 .]      26     491 ..      24     491 .. 0.93

  Alignments for each domain:
  == domain 1  score: 385.2 bits;  conditional E-value: 4.7e-119
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH......HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTT CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskee...ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakg 98 
                 +++a+gg+l+gYdtg+i+++l+++  +   + + +++++     ++ + ++ivsi+++G ++G+l++ l+gdr+GR+ +l+i++ +f  g +lq +++ 
  CCE29563.1  26 FFVAFGGVLYGYDTGTISGILAMPYWQDT-FSTGYRNPEGHldvTTNQESAIVSILSAGTFLGALLSPLMGDRIGRRLALMISCWVFNFGVILQTVST- 122
                 789********************995444.44444444444466999***************************************************. PP

                 TSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHH CS
    Sugar_tr  99 knsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPry 197
                   ++ ++++gR+++G+gvGl+s+l+P+y+sE Apk +Rga+v+ yq++it+G l+aa+++  +++  ++  +ri++++q++++++l+++l+ lPE+Pr+
  CCE29563.1 123 --AIPMFLAGRFFAGLGVGLISALIPLYQSETAPKWIRGAIVGSYQFSITVGLLLAAVVNNSTKDRYDTGSYRIPIAVQFAWSIILFAGLIILPETPRF 219
                 ..9************************************************************777777****************************** PP

                 HHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHH CS
    Sugar_tr 198 lvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee....kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllv 292
                 l+++g+ e+a + l +lr  + +++++ ee ++++ + + e    +as+   ++    ++r l+g+++q +qqltGin+i+yy+++ fe  g+s  +++
  CCE29563.1 220 LIKVGQGEKAAKALGTLRRLPADHPAVREELREIQSNHDFEmsigSASYLGCFKA-PLLKRQLTGMAIQGLQQLTGINFIFYYGTKYFERSGVSSGFVI 317
                 ********************************99999999997775555555555.379**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS.............CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHT CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks..........kaasivaivfialfialfalgwgpvpwvlvsElfpq 381
                 ++i++++n+++t+ ++++ d++GRR+lll+Ga+gma+  +i++ v   l++++           + + +a++f +++i++fa +wgp+ wv+  E+fp+
  CCE29563.1 318 SMITSAINVISTLPGMYMTDKWGRRPLLLFGAIGMAVSQLIVA-VSGTLSSGQtadgvvtvtnLGGQKAAVAFSCFYIFFFASTWGPLAWVVTGEIFPL 415
                 ******************************************9.444444444556888888889999******************************* PP

                 TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH.....T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 382 svRskalaiavavnwlanflisllfpiiteaig.....ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 + R+  l++++a+nwl n +i++ +p++++        + ++f+++ +++ + i fv+ff++etkg+tlee+++++
  CCE29563.1 416 KSRARSLSMTTATNWLLNWAIAYSTPYLVNYGDgyanlQSKIFFIWFACCFICIAFVYFFIYETKGLTLEEVDQMY 491
                 *****************************988888888899********************************996 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1  34.1   1.5e-22   1.3e-18       1     346 [.      28     431 ..      28     438 .. 0.79
   2 !   19.7  21.8   3.8e-08   0.00034      14     177 ..     294     481 ..     281     516 .. 0.74

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 1.5e-22
       MFS_1   1 lllaaflsalarsilgpalpl.alaedlg...........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw 86 
                 ++++++l++++ ++++ +l + + ++++            ++  + + ++++ ++g+++++l+   ++dr+Grr  l+++  +f +g ++l  +++ ++
  CCE29563.1  28 VAFGGVLYGYDTGTISGILAMpYWQDTFStgyrnpeghldVTTNQESAIVSILSAGTFLGALLSPLMGDRIGRRLALMISCWVFNFG-VILQtVSTAIP 125
                 57999**************99899888777777777776688888899***************************999999999999.66664547788 PP

       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrk 182
                 ++l++r+++Glg g++ +++  + ++ +pk  rg  +g ++ ++ +G +l++++     + +    +r +  +  + s+++f  +l+ lpe+p+   ++
  CCE29563.1 126 MFLAGRFFAGLGVGLISALIPLYQSETAPKWIRGAIVGSYQFSITVGLLLAAVVNNSTKDRYDtgsYRIPIAVQFAWSIILFA-GLIILPETPRFLIKV 223
                 *******************************************************9887777777799999999999999988.447888888888888 PP

       MFS_1 183 spkeee........................kgtgpaplvp...............awkallkdpvlwillialllfffgfsglltllplylqevlglsg 242
                  + e+                         +        +                +ka l +++l  + i  l   +g+++++++ + y  e+ g s 
  CCE29563.1 224 GQGEKAakalgtlrrlpadhpavreelreiQ--------SnhdfemsigsasylgCFKAPLLKRQLTGMAIQGLQQLTGINFIFYYGTKY-FERSGVS- 312
                 7777768887777766666555333333330........144444444445433345555555544445555555555666666666666.5555555. PP

       MFS_1 243 lllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt................ssavllllvlvliGfglgfvfpsllala 325
                   ++ +++++++++++i+ l + ++ d++grr+ ll++ ++++++ l++a+ ++                   +++++++++ i f++++  p++++++
  CCE29563.1 313 --SGFVISMITSAINVISTLPGMYMTDKWGRRPLLLFGAIGMAVSQLIVAVSGTLssgqtadgvvtvtnlgGQKAAVAFSCFYIFFFASTWGPLAWVVT 409
                 ..6777799**********************************************9998887777777776666666667777888999999******* PP

       MFS_1 326 sdlappeeagtasglfn.tags 346
                  + +p + +++ ++ ++ t + 
  CCE29563.1 410 GEIFPLKSRARSLSMTTaTNWL 431
                 ****999999888877744444 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 3.8e-08
       MFS_1  14 ilgpalplalaedlgispseigllltl.yalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa...ss...............lw.lllvlr 92 
                  +++++  + ++ +  s+ + g+++++  ++  ++++lp+++++d++Grr++ll+g++++a++ l+ +++   ss                  +++++ 
  CCE29563.1 294 GINFIFY-YGTKYFERSGVSSGFVISMiTSAINVISTLPGMYMTDKWGRRPLLLFGAIGMAVSQLIVAVSgtlSSgqtadgvvtvtnlggQKaAVAFSC 391
                 4555555.6677788888888887777688899******************************777775233422455666666666665332355555 PP

       MFS_1  93 vlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepp 177
                 +   ++a++  p++ +++ ++fp + r+r +++ +a++ l     +   ++l+ ++g       + +f+i  + +++++ +++++++e++ 
  CCE29563.1 392 FYIFFFASTWGPLAWVVTGEIFPLKSRARSLSMTTATNWLLNWAIAYSTPYLV-NYGdgyanlQSKIFFIWFACCFICIAFVYFFIYETKG 481
                 555556677779***************************99988888999999.5555877776667999999999999998888865543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3990.71
//
Query:       CCE29564.1  [L=81]
Description: uncharacterized protein CPUR_03411 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 697.73
//
Query:       CCE29565.1  [L=631]
Description: related to alcohol oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-63  213.5   0.0    5.7e-63  213.1   0.0    1.2  1  GMC_oxred_N    GMC oxidoreductase
    4.9e-35  121.2   0.0    9.9e-35  120.2   0.0    1.5  1  GMC_oxred_C    GMC oxidoreductase
     0.0045   16.1   0.6       0.16   11.1   0.0    2.1  2  FAD_binding_2  FAD binding domain
     0.0056   15.8   0.1     0.0094   15.0   0.1    1.3  1  Lycopene_cycl  Lycopene cyclase protein
  ------ inclusion threshold ------
       0.03   13.6   0.1       0.24   10.6   0.1    2.0  2  Thi4           Thi4 family
      0.062   12.9   0.5        3.2    7.2   0.2    2.4  2  DAO            FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.1   0.0   1.9e-66   5.7e-63       1     294 [.      11     323 ..      11     325 .. 0.90

  Alignments for each domain:
  == domain 1  score: 213.1 bits;  conditional E-value: 1.9e-66
  GMC_oxred_N   1 vdelveggGsagsvvAaRLse.dpstsvlvleaggreknrl.imvlalalkl..idkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRt 94 
                  +d +++ggG++++vvA RL+e dp  s+l++e g ++ n    ++ al++++   ++k++ +y+ + e ++ngr +++p+G++lGGgs++N+++y R+
   CCE29565.1  11 YDIIIAGGGTVACVVAGRLAEaDPTLSILIIEQGQNNLNDPaVTTPALFWSNlgPESKYASFYKANKEDSINGREAVVPTGRVLGGGSSINFMMYARA 108
                  799*****************857899********99977766555555554412789***************************************** PP

  GMC_oxred_N  95 paadldeWeeeaglegwssdevlpafkkvetaqale....sdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngk.hqcG.vcllgvtc 186
                  +a d+d+W++e    gw+s+ + ++ kk+et +       +++hg  g++gv + g++e  + +++ +aa  +G +++ d+++    +G + +l  + 
   CCE29565.1 109 QACDFDSWNTE----GWDSKSLIALAKKLETFHLHGpeydKSIHGYSGPIGV-SYGTYEPLAHHDITAAAVAVGEKLVVDMQNFtTATGiFRWLRYVS 201
                  ***********....9**************6654436699************.99*********************88888887666672567777** PP

  GMC_oxred_N 187 rtgarqstarawLrpal...erpnleiltgakaekiilegrkkravGVeasdkkgt............vkrlvvaakevvvaaGalnsPqlLqrSGlG 269
                  ++g+rq+ta+ +++p +   + pn ++l ++++++++++  ++ra+GVe++ +  +             +++ +a+k vvv+aGal sPqlL+rSG+G
   CCE29565.1 202 PDGKRQDTAHRYIHPLMtsgKYPNIHLLLNTTVSRVLFQ--DTRATGVECQPSIASnatstagsattnPSTTLTARKLVVVSAGALGSPQLLERSGIG 297
                  ****************9655569****************..**********9877777899999998878999************************* PP

  GMC_oxred_N 270 kaehLkevgvdvvvdlp.vGknLqdH 294
                  ++e L+++++ +v +lp vG+n qdH
   CCE29565.1 298 NKEILAPLDIPLVAHLPgVGENYQDH 323
                  ************************** PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.0   3.3e-38   9.9e-35       1     144 []     445     616 ..     445     616 .. 0.90

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 3.3e-38
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGG.............................TTEECCEECCCTTTTS.HC CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaal.............................dvleeeltpgaaeetsdaa 69 
                  P+srG++++ s+dp+ +p+++ ++ls+ +dl+a ++a+k+ r+i++++++                              +   +  +g+ +   + +
   CCE29565.1 445 PYSRGNIHIVSKDPSCPPCFNTGFLSHSADLKAQLWAYKKQREIMRRTNIfhaevpgchpkfpkgskaalmdhhplgamSLYASSEDRGNLPAL-EYD 541
                  99**********************************************7777788888888888998999999988887666666666665554.455 PP

                  HHCHHCHHCHHHHH-EE-S--B-TT-B-STCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  70 vesdealekfvkeavltsaHplGtcrMGadpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  +++d+a+e++++++  t++H lGtc+M+++++ +VVD+dl+vhgv+nL+++D S++P+++ an++ t+l ++eka
   CCE29565.1 542 ADDDAAIEEYIRDRLDTTWHSLGTCKMAPRERGGVVDKDLNVHGVTNLKIADLSICPENVAANTYNTALIVGEKA 616
                  566668*******************************************************************97 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.013        38       1      33 [.      12      46 ..      12      55 .. 0.89
   2 !   11.1   0.0   5.2e-05      0.16     135     207 ..     205     291 ..     129     304 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.013
                   SEEEE--SHHHHHHHHHHHHTTT..-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGl..kvavvekeqe 33
                   D+i+ G+G   ++ A ++aea    +++++e++q+
     CCE29565.1 12 DIIIAGGGTVACVVAGRLAEADPtlSILIIEQGQN 46
                   99*****************9764459******997 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.2e-05
                    ....HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEET............TTTCEEEEEES.EEEE-----GG.... CS
  FAD_binding_2 135 etlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenp............esgrevrirak.avvlatgGfgr.all 207
                    ++  t h+ +++l++s +  +++++ +t + +++ +d r+tG++++++            ++   ++++a+  vv+ +g+ g  +ll
     CCE29565.1 205 KRQDTAHRYIHPLMTSGKYPNIHLLLNTTVSRVLFQDTRATGVECQPSiasnatstagsaTTNPSTTLTARkLVVVSAGALGSpQLL 291
                    4456999*********95556*************************99*99999887777444445788888999999999984444 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   3.2e-06    0.0094       1      37 [.      12      48 ..      12      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.2e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsll 37
                   D+++ G+G   + +A rl+ea p l++++ie +++ l
     CCE29565.1 12 DIIIAGGGTVACVVAGRLAEADPTLSILIIEQGQNNL 48
                   9******************************998765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   7.9e-05      0.24      15      49 ..       8      43 ..       2      46 .. 0.91
   2 ?    0.1   0.0      0.13   3.9e+02     110     164 ..     223     281 ..     210     289 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.9e-05
                HTEEEEEEE--SHHHHHHHHHHHHC.TTS-EEEEES CS
        Thi4 15 yaesDvvivGaGssGLtaayylakk.pdlkvailer 49
                 ae D++i G+G+     a  la++ p l ++i+e+
  CCE29565.1  8 PAEYDIIIAGGGTVACVVAGRLAEAdPTLSILIIEQ 43
                5899*********9999999999999*********7 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.13
                 STTEEEEESEEEEEEEEETBTEEEEEEEEEHHHHTC..TTTSS.-B-EE.EEEE..EEEE CS
        Thi4 110 lanvkllnavaveDlivregegvaGvvinwtlvela..hdtqscvDPlv.irak..vvvd 164
                  +n+ ll  ++v  +++++ ++ +Gv  + ++ + a      +  +P + + a+  vvv+
  CCE29565.1 223 YPNIHLLLNTTVSRVLFQD-TRATGVECQPSIASNAtsTAGSATTNPSTtLTARklVVVS 281
                 599***************9.9999*99988877777332234455665413332324444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2    0.0011       3.2       1      29 [.      12      44 ..      12      52 .. 0.92
   2 ?    3.3   0.0     0.017        50     160     205 ..     225     287 ..     173     312 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0011
                EEEEECTSHHHHHHHHHHHHTT....EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg....Vtllekg 29
                d++i GGG + + +A  La++     ++++e+g
  CCE29565.1 12 DIIIAGGGTVACVVAGRLAEADptlsILIIEQG 44
                8******************9855999*****98 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.017
                 T-EEEESECEEEEEEEETCEEEEE...............EECT.EEEEEEEE.EEE--GGGHH CS
         DAO 160 Gveilegtevtgleeedgkvwgve...............rttp.gendaada.vVnaaGawsd 205
                  +++l++t+v ++  +d +++gve                tt+  ++ +a++ vV++aGa  +
  CCE29565.1 225 NIHLLLNTTVSRVLFQDTRATGVEcqpsiasnatstagsATTNpSTTLTARKlVVVSAGALGS 287
                 56778888888876677778888888888776655455544444444244778******8644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.68
# Mc/sec: 2804.15
//
Query:       CCE29566.1  [L=508]
Description: uncharacterized protein CPUR_03413 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        0.4   10.6  31.4        0.5   10.3  31.4    1.1  1  TFIIA           Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  31.4   2.8e-05       0.5     143     231 ..     402     488 ..     308     507 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.8e-05
       TFIIA 143 kvnvqasgaqqiaaqplqqvvqqsqgsaaqssvaalqaq.sqqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqeesqqaqqasqe 231
                 +++ q++ + qi + p+ q++   q++++ +  +++q+q ++q q++++pq ql++q q+ q q q+qqqqq qq++q ++q ++q +q+
  CCE29566.1 402 QSQSQSQPQPQIPQTPQSQTQL--QPQVQVQPQSQVQPQsQSQPQSQSQPQPQLRPQSQS-QPQLQPQQQQQKQQHHQPQPQLPPQMHQS 488
                 2333555555555555555533..333333333333333334444444444442211111.11111111112222222223333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1791  (0.099894); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 3367.82
//
Query:       CCE29567.1  [L=693]
Description: uncharacterized protein CPUR_03414 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-09   35.9   0.3    7.6e-09   34.9   0.3    1.5  1  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.3   4.2e-13   7.6e-09      17     130 ..     225     331 ..     208     349 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 4.2e-13
  Fungal_trans_2  17 vpessnpfrkvllplalsnkallhallalsafhlqskgpkdslereakrykslalkelqealaelsstlsrnekykdiLaaiLllcsieissgdv 111
                     +p++ n f++  +p+ +++k +lh +l+ +a +l+ +g     +   + ++ ++ ++l+e ++ ++ ++s     ++ + a+  l++   ++g+ 
      CCE29567.1 225 SPRPNNRFMRHWIPFSIQDKLVLHVVLCTTASFLNETGRLP--KVLLHIHRATTTSLLNEYISSPTLCTS-----DSAILAVYQLILTSWYWGST 312
                     56779*****************************9999999..99*************************.....99999999************ PP

  Fungal_trans_2 112 sdwrvhLeaatsliksrgg 130
                     ++ + h+ + +++i+ rgg
      CCE29567.1 313 EELHAHMAGFKNMIQLRGG 331
                     *****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5152.29
//
Query:       CCE29568.1  [L=627]
Description: related to calcium-independent phospholipase A2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-16   59.9   0.1    2.8e-15   57.1   0.0    2.3  2  Patatin   Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   1.5e-19   2.8e-15       1     203 [.      20     282 ..      20     283 .. 0.76
   2 ?   -3.3   0.1      0.47   8.4e+03     126     176 ..     539     602 ..     497     617 .. 0.67

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.5e-19
     Patatin   1 LvlsGGGsrgafslgalkaL.................kkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaar 82 
                 L+l+GGG+rg+++l ++++L                   +++++fd+i+Gt +G++ial+l+  r + ++ ++l+    +  f  d           + 
  CCE29568.1  20 LSLDGGGVRGYSMLIIVQELmhrtfveaegraprrheIPKPCDHFDLIVGTGTGGLIALMLGRMRLDLETCKELYVRMTRVVFETD-----------KT 107
                 89*****************888889999999999888899***********************************99999999999...........9* PP

     Patatin  83 lsgllgkgglfdaealrellrkvladktlkrlsarlgklpllks....................................................lft 129
                   g + +++lf a  l+e ++++++++t +++   ++    + +                                                     + 
  CCE29568.1 108 IAGIPYRSTLFKASKLEEAIQQAVQEHTAHEKNGSRDDGLMSPLnaaqhssaaaprrnpsnastisfsarspsaqmsrpawtsrhgnpharlydarENR 206
                 *********************997666666666666666443335566665555555555555677778888888888877777666666655555333 PP

     Patatin 130 anqavpaittataatastanranglytedddd..dvdladavraSsafPglfppvsldgelyvDGGilsNvPilaa 203
                 + +av+a  + +++   +a  +  +++ ++++  d ++++a ra+sa+ ++f+p +++  ++ D G  + +P+  a
  CCE29568.1 207 TKTAVTAVYQGSPRGSPPAMLRSYDSRREPPPefDCKIWQAGRATSAIGLAFKPIRIGQSIFHDDGAGNFNPAPDA 282
                 3333333333333333333333333333333366778888********************9999888888888666 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.47
     Patatin 126 s............lftanqavpaittataatastanranglytedddddvdladavraSs.afP 176
                              l +++ a p  +++ + +  + ++  + ++ +  +++++   +r S  a+P
  CCE29568.1 539 IaimspdeyprssLPPPQAAGPPPVRIEPPPLPPKTPLPISNRRQSLPQMPVPPPLRLSQpAVP 602
                 0444444455555556666777777777777777777777777777777777766666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4475.71
//
Query:       CCE29569.1  [L=833]
Description: uncharacterized protein CPUR_03416 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.013   16.0  20.9        3.8    8.2   1.7    5.1  4  zf-C2H2        Zinc finger, C2H2 type
      0.025   14.5   0.0      0.057   13.4   0.0    1.6  1  Raptor_N       Raptor N-terminal CASPase like domain
      0.066   13.2   0.0       0.12   12.4   0.0    1.4  1  Peptidase_C14  Caspase domain
       0.14   11.8   0.0       0.38   10.4   0.0    1.7  1  zf_C2H2_13     Zinc finger domain
       0.25   11.3   4.0       0.48   10.3   4.0    1.4  1  Sina           Seven in absentia protein family
       0.26   12.2  25.1       0.13   13.2   2.1    5.3  4  zf-C2H2_4      C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.7    0.0013       3.8       3      23 .]     597     619 ..     596     619 .. 0.91
   2 ?    6.8   0.2    0.0033       9.9       1      23 []     623     650 ..     623     650 .. 0.89
   3 ?    6.6   2.0    0.0038        12       1      23 []     656     687 ..     656     687 .. 0.83
   4 ?    4.7   0.2     0.015        46       3      14 ..     731     744 ..     730     747 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0013
                 ETTTT.EEESSHHHHHHHHHC.C CS
     zf-C2H2   3 CpdCg.ksFkrksnLkrHirt.H 23 
                 C++C+  +Fk+ s+L++H    H
  CCE29569.1 597 CSHCShAPFKDYSSLRKHVAAaH 619
                 9*****************87666 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0033
                 EEET....TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp....dCgksFkrksnLkrHirt.H 23 
                 ++C     +C+ +F +k + krHi + H
  CCE29569.1 623 FPCAfsfaGCTSTFGSKNEWKRHIASqH 650
                 667777779***************9988 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0038
                 EEETTTT........EEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCg........ksFkrksnLkrHirt.H 23 
                 y+C+ C+          F+rk+++++H+r+ H
  CCE29569.1 656 YRCSACPqsaiegrgNEFNRKDLFTQHLRRmH 687
                 67777777777777788*************99 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.015
                 ET..TTTEEESSHH CS
     zf-C2H2   3 Cp..dCgksFkrks 14 
                 Cp  dC+ksF  +s
  CCE29569.1 731 CPkhDCHKSFEGQS 744
                 8888******8776 PP

>> Raptor_N  Raptor N-terminal CASPase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.9e-05     0.057      31      97 ..      87     156 ..      63     198 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
    Raptor_N  31 eawid.psse..leeiaknlqdqyeslqlrarykqlldptvedvkklcqslrrnakdervlfHYnGhgvp 97 
                   w d ps++  + ++++ l++ y+ ++ r+++ ++++p+++   ++ + l +  ++  ++++Y Ghg+ 
  CCE29569.1  87 LSWEDdPSVDqdVAAFEAILRSKYNYVTRRWQIPTVPNPSIKLGVQMASFLENARPNHLLIIYYAGHGIV 156
                 455541444335799999*************************999777777777778888*******75 PP

>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.9e-05      0.12      22     129 ..      96     199 ..      93     331 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.9e-05
                    HHHHHHHHHHHHHHTTEEEEEEEGGEES-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEEE.T....EEECTTC...SSEEEHHHHHHTTSTTTH CS
  Peptidase_C14  22 anDaermaklLvkrlgFevenililtddptgknirkalkwlvksadhspgDslvvhysGHGt.rvpaecivpvdv...nsliqdddirdlfggdkl 113
                    + D+ +++++L +++++  +   i t    ++++   +  + + a+  p+  l+++y+GHG+ + ++     +++   +  ++ d +r+lf     
     CCE29569.1  96 DQDVAAFEAILRSKYNYVTRRWQIPTVPNPSIKLGVQMASFLENAR--PNHLLIIYYAGHGIvGSDGHLYWACNAldeSAKLKWDGVRCLF----- 184
                    5788899999988888888886666666667777788999999999..**************65444444444434335555555555555..... PP

                    GGGTTS-EEEEEESES CS
  Peptidase_C14 114 pslagkpktiiidaCr 129
                     ++a+  +++++d C 
     CCE29569.1 185 -EDAQSDILLLLDTCA 199
                    .444444567777776 PP

>> zf_C2H2_13  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00013      0.38      15      30 ..     787     802 ..     776     804 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
  zf_C2H2_13  15 lnYRvCnkCGkPisle 30 
                  +YR+Cn+ G P+s +
  CCE29569.1 787 GQYRLCNASGMPLSQD 802
                 59***********976 PP

>> Sina  Seven in absentia protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.0   0.00016      0.48      30      71 ..     608     650 ..     595     664 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
        Sina  30 leekakHeeeckfrpysCpcpgakCkwq.GdldellkHlrneH 71 
                 +++ +kH    + rp+ C ++ a C+ + G+++e++ H+ ++H
  CCE29569.1 608 YSSLRKHVAAAHTRPFPCAFSFAGCTSTfGSKNEWKRHIASQH 650
                 77889********************8544************** PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.1   4.2e-05      0.13       3      24 .]     597     619 ..     595     619 .. 0.94
   2 ?    9.4   0.3   0.00073       2.2       5      24 .]     627     650 ..     623     650 .. 0.83
   3 ?    0.1   3.0      0.69   2.1e+03       9      24 .]     672     687 ..     656     687 .. 0.78
   4 ?    1.6   0.6      0.23   6.8e+02       3      23 ..     731     756 ..     730     757 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.2e-05
   zf-C2H2_4   3 CpiC.gksFsskkaLlrHlkthH 24 
                 C++C +++F+++++L++H+++ H
  CCE29569.1 597 CSHCsHAPFKDYSSLRKHVAAAH 619
                 *******************9987 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00073
   zf-C2H2_4   5 i....CgksFsskkaLlrHlkthH 24 
                 +    C+ +F sk++++rH++++H
  CCE29569.1 627 FsfagCTSTFGSKNEWKRHIASQH 650
                 55555****************999 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.69
   zf-C2H2_4   9 sFsskkaLlrHlkthH 24 
                  F++k+ + +Hl+++H
  CCE29569.1 672 EFNRKDLFTQHLRRMH 687
                 6877777888999998 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.23
   zf-C2H2_4   3 Cpi..CgksFsskka...LlrHlkth 23 
                 Cp   C+ksF  ++a   +  H+ +h
  CCE29569.1 731 CPKhdCHKSFEGQSAwdeWTEHVGRH 756
                 77777*****9999878877787777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5568.53
//
Query:       CCE29570.1  [L=414]
Description: uncharacterized protein CPUR_03417 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.02   14.2   1.6       0.02   14.2   1.6    4.4  4  DUF4763         Domain of unknown function (DUF4763)
       0.24   10.2   8.8       0.37    9.5   8.8    1.5  1  Otopetrin       Otopetrin
       0.38    8.7  11.7       0.57    8.1  11.7    1.4  1  Dicty_REP       Dictyostelium (Slime Mold) REP protein
        1.6    7.1   6.7        2.3    6.6   6.7    1.2  1  Cellulose_synt  Cellulose synthase
        1.9    7.2  39.7      0.014   14.2  28.3    2.1  2  Presenilin      Presenilin
        6.1    4.8  19.3        9.2    4.2  19.3    1.2  1  Totivirus_coat  Totivirus coat protein


Domain annotation for each model (and alignments):
>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -18.4  48.0         6   1.8e+04      80     142 ..      22      87 ..      15      88 .. 0.69
   2 ?  -25.3  50.0         6   1.8e+04      93     145 ..      66     117 ..      64     127 .. 0.66
   3 ?   14.2   1.6   6.6e-06      0.02     100     144 ..     267     311 ..     257     335 .. 0.88
   4 ?   -3.6   2.3       1.8   5.4e+03      20      41 ..     364     385 ..     351     393 .. 0.42

  Alignments for each domain:
  == domain 1  score: -18.4 bits;  conditional E-value: 6
     DUF4763  80 Peidecvdedlele.lltseqpeileLqrnnhkLrqqlaelqqhlk..asrkslkelreslcqekk 142
                 P+ ++ ++ +  ++ + + +q  +++Lq+++++L+qq++++qq+ +  +++++l++l+++++q+++
  CCE29570.1  22 PQSQQQQQYHFAANpAQQAQQARLQQLQQEQQQLQQQQQQQQQQQQqqQQQQKLQQLQQQQQQQQQ 87 
                 66666666666554144557889************9988776665500566677778877777765 PP

  == domain 2  score: -25.3 bits;  conditional E-value: 6
     DUF4763  93 elltseqpeileLqrnnhkLrqqlaelqqhlkasrkslkelreslcqekkrlr 145
                 ++ +++q+++++Lq+++++ +qq++++qq+ ++++++ ++ +++++q ++ + 
  CCE29570.1  66 QQQQQQQQKLQQLQQQQQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQ-QQLAG 117
                 56677999999999999999988888888877777765544443333.33333 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 6.6e-06
     DUF4763 100 peileLqrnnhkLrqqlaelqqhlkasrkslkelreslcqekkrl 144
                  ++ e +++n++Lr q+ e+  h  + ++sl+++r+++ ++ +r 
  CCE29570.1 267 SQLDEARQENSRLREQIWEMRTHASRANESLRQFRRKYYEDERRW 311
                 6899*********************************99988876 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 1.8
     DUF4763  20 vsqseqldveeeisseselpae 41 
                 ++q ++++ + e  +e++++++
  CCE29570.1 364 AMQDQMMEGQMEEGEEEGEEEQ 385
                 2233333333333333333222 PP

>> Otopetrin  Otopetrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   8.8   0.00013      0.37      96     153 ..      53     110 ..      17     214 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00013
   Otopetrin  96 keitaylekeesaeeassssssaridalrkakkvltkstakekiisarleqrtastes 153
                 +++ ++++++++++++++++++ ++ ++++++++++++++++++++++ +q+++++++
  CCE29570.1  53 QQLQQQQQQQQQQQQQQQQQQKLQQLQQQQQQQQQQQHQQQQQQQQQQQQQQQQQQQQ 110
                 2212222222222222222222222222111111111111111111111111111111 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  11.7   0.00019      0.57     249     314 ..      47     112 ..      15     247 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00019
   Dicty_REP 249 pskeknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddpqsdfskkssrks 314
                 + ++++++ +++ +    ++q++++++k ++ ++ +++q++++++++++ +++ q++ ++++++++
  CCE29570.1  47 QLQQEQQQLQQQQQQQQQQQQQQQQQQKLQQLQQQQQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQ 112
                 222222222222222222222211111111111111111111111111111111111111111111 PP

>> Cellulose_synt  Cellulose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.7   0.00078       2.3     311     367 ..      52     109 ..      24     190 .. 0.47

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00078
  Cellulose_synt 311 gkrkkkkkkkkekkkkaskkkeseaeileledidealeg.deeekssllsqlklekkf 367
                     +++ +++++++++++++++++++ +++++ ++++++ ++ +++++++  +q++ +++ 
      CCE29570.1  52 QQQLQQQQQQQQQQQQQQQQQQKLQQLQQQQQQQQQQQHqQQQQQQQQQQQQQQQQQQ 109
                     1111111111111111111111111111111111111110111111111111222222 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2  28.3   4.5e-06     0.014     228     316 ..      29     112 ..       9     177 .. 0.47
   2 ?   -1.2   3.5      0.22   6.6e+02     235     304 ..     284     377 ..     237     406 .. 0.46

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.5e-06
  Presenilin 228 k.kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessesseeeeeeeeeeeese 316
                 + + ++++++      +++++  ++ ++e+++ +++++++q+++++++++++ ++ ++++++++++++++++++++++++++++++++++
  CCE29570.1  29 QyHFAANPAQ------QAQQARLQQLQQEQQQLQQQQQQQQQQQQQQQQQQKLQQLQQQQQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQ 112
                 1222222222......22222222222222222222222222222222222222222222222222222222222222222221111111 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.22
  Presenilin 235 seeeeeaekkkeeasesskeeeseeesseksaqsse........................................................seeesee 277
                  e +++a++++e+ ++ +++  ++e          +                                                        +      
  CCE29570.1 284 WEMRTHASRANESLRQFRRKYYEDE----------RrwdhkientalrqelrfwkrmampeleeddpywsgdddvidsaekvrlremeeramQ------ 366
                 2333333333333332222222222..........1233333333355567777777777777777777766555444433322221111110...... PP

  Presenilin 278 esseaessaeesseekeseessessee 304
                                ++  ++ + +e 
  CCE29570.1 367 ---------------DQ-MMEGQMEEG 377
                 ...............11.111111111 PP

>> Totivirus_coat  Totivirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  19.3    0.0031       9.2     596     726 ..      19     147 ..       6     176 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0031
  Totivirus_coat 596 snaedrevrRartraakaLaqavaraRlaGaasvgemeisgvppvsetappkkeanrtgeaglvsergaeqvsaeaetakpervargdpvrltah 690
                     s   +++ + ++  aa+  +q +++aRl+   +  ++  ++++ +++  +++++++++++    ++++++q   +++++++++++  +  +  ++
      CCE29570.1  19 SQHPQSQQQQQYHFAANPAQQ-AQQARLQQLQQEQQQLQQQQQQQQQQQQQQQQQQKLQQLQQQQQQQQQQQHQQQQQQQQQQQQ--QQQQQQQQ 110
                     444456666777777877766.9****9966665555555554444444444444445444444444444444333333333333..33344444 PP

  Totivirus_coat 691 haalrapqlpra.ggasdGgggvppppalgaaagdap 726
                      +++ a  ++   g+  +Ggggvp p+a+++a+ +a 
      CCE29570.1 111 QQQQLAGAMNAMnGNMAGGGGGVPMPAAPTPAGHQAE 147
                     4444444444440455566777888888888776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      7560  (0.421663); expected 358.6 (0.02)
Passed bias filter:                     1870  (0.1043); expected 358.6 (0.02)
Passed Vit filter:                      1271  (0.0708907); expected 17.9 (0.001)
Passed Fwd filter:                       319  (0.0177924); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 2.94u 0.44s 00:00:03.38 Elapsed: 00:00:00.67
# Mc/sec: 1867.83
//
Query:       CCE29571.1  [L=548]
Description: uncharacterized protein CPUR_03418 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-14   52.2   6.0    5.2e-14   52.2   6.0    3.1  4  zf-UBR    Putative zinc finger in N-recognin (UBR box)


Domain annotation for each model (and alignments):
>> zf-UBR  Putative zinc finger in N-recognin (UBR box)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   6.0   2.9e-18   5.2e-14       2      69 ..      56     131 ..      55     132 .. 0.89
   2 ?   -2.6   1.0      0.35   6.3e+03       2      16 ..     167     182 ..     153     193 .. 0.65
   3 ?   -0.4   0.0     0.071   1.3e+03      25      34 ..     283     292 ..     277     296 .. 0.78
   4 ?   -2.4   0.3      0.31   5.6e+03      12      18 ..     411     417 ..     402     421 .. 0.60

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 2.9e-18
      zf-UBR   2 Ctkvf.kkgevvyrCltCsld..........etsviCeeCfkaskHeghelvelstkrnggvCdCGdeeawkeegfCkk 69 
                 Ctk++ +  + v++CltC++           + +++C++C+ ++ H +helve+++krn ++CdCG++++ k e+ C++
  CCE29571.1  56 CTKILgSLRQNVFACLTCNPApagatkrddwKPAGVCYACSVQC-HGEHELVEIFQKRN-FTCDCGTTRIPK-ESPCTL 131
                 999885667******************9999569**********.*************9.*********666.556875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.35
      zf-UBR   2 Ctk.vfkkgevvyrCl 16 
                 C +  f+++ ++++Cl
  CCE29571.1 167 CDYdPFQQKGTMFQCL 182
                 4443345566666665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.071
      zf-UBR  25 viCeeCfkas 34 
                  iC++C++a+
  CCE29571.1 283 FICYKCVEAN 292
                 6899998865 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.31
      zf-UBR  12 vyrCltC 18 
                 + +C++C
  CCE29571.1 411 LCHCRDC 417
                 3345555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       940  (0.052429); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4148.73
//
Query:       CCE29572.1  [L=866]
Description: probable DNA replication licensing factor (nimQ) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-101  338.2   0.8   2.6e-101  337.4   0.0    1.7  2  MCM              MCM P-loop domain
    9.5e-39  132.1   0.1    1.7e-38  131.3   0.1    1.4  1  MCM_OB           MCM OB domain
    3.4e-34  118.3  29.6    3.8e-34  118.2  26.3    2.6  3  MCM2_N           Mini-chromosome maintenance protein 2
    3.2e-25   88.4   0.6    8.7e-25   87.0   0.6    1.8  1  MCM_lid          MCM AAA-lid domain
    1.5e-14   54.4   0.1    3.6e-14   53.2   0.1    1.6  1  MCM_N            MCM N-terminal domain
    3.8e-08   33.0   0.0    1.8e-06   27.5   0.0    2.5  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    1.4e-06   28.3   0.0    3.3e-06   27.1   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
      0.002   17.8   0.1      0.013   15.2   0.1    2.0  1  Sigma54_activat  Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.011   15.5   0.1      0.076   12.9   0.0    2.3  2  AAA_3            ATPase family associated with various cellul
       0.21   12.3   0.3       0.65   10.7   0.3    1.8  1  Zn_ribbon_2      Putative zinc ribbon domain


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.7       1.1   1.9e+03     127     147 ..      69      89 ..      68      91 .. 0.88
   2 !  337.4   0.0  1.5e-104  2.6e-101       1     224 []     473     696 ..     473     696 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
                 EESGGGSTCHHHHHHHHHHHH CS
         MCM 127 iDefdkmkeedrsalhEamEq 147
                 iD++d+m ++d +   E +E 
  CCE29572.1  69 IDDLDEMADDDVDLFREGFEA 89 
                 9********999999998885 PP

  == domain 2  score: 337.4 bits;  conditional E-value: 1.5e-104
                 HHHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSS CS
         MCM   1 eveeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLta 99 
                 +++ei++l+++++i++++v+s+apsiygh+d+k+a++l+lfggv+k+++ ++++rgdinvll+gdpgtaKsq+Lkyvek+a+rav+++g+g+sa+gLta
  CCE29572.1 473 DEQEIRKLSRDPNIVDRIVRSMAPSIYGHDDIKTAVALSLFGGVAKTTRGQHHIRGDINVLLLGDPGTAKSQVLKYVEKTAHRAVFATGQGASAVGLTA 571
                 5799*********************************************************************************************** PP

                 EEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHS CS
         MCM 100 avvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrF 198
                 +v+rd+ t+e++le+Galvlad+G c+iDefdkm+++dr+++hEamEqqtisi+KaGiv+tL+ar+ ++aAanp++gry+++++++ n+nl++++LsrF
  CCE29572.1 572 SVRRDPLTSEWTLEGGALVLADRGTCLIDEFDKMNDQDRTSIHEAMEQQTISISKAGIVTTLQARCGIIAAANPQGGRYNSTQPFSANVNLTEPILSRF 670
                 *************************************************************************************************** PP

                 SEEEEE-SSTTHHHHHHHHHHHHHHH CS
         MCM 199 DlifvllDkvdeekDeelaehivslh 224
                 D+++v++D+v+ e+De+la++iv +h
  CCE29572.1 671 DILCVVRDTVEPEEDERLARFIVGSH 696
                 **********************9876 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.1   9.7e-42   1.7e-38       2     124 ..     307     433 ..     306     435 .. 0.92

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 9.7e-42
                 XGG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EE.ES---.......-SB-..TTT-HHH-EEE-GGGSEEEEEEEEEEE--------- CS
      MCM_OB   2 lRdlrsehigklvkveGivtrasevkpklkkavfeckkcgktve.velee.......PrkCeekeCeskdpfkletekskfvdfqklklQEspeevpaG 92 
                 lR+lr++h++ lv+v+G+vtr+s v+p+lk ++f+c kcg t++ +  ++        + C  ++C+s++pf++++ek++++++qkl+lQEsp++vpaG
  CCE29572.1 307 LRQLRQSHLNCLVRVSGVVTRRSGVFPQLKYVKFDCGKCGITLGpF--QQesnvevkLTYC--QSCQSRGPFTVNSEKTVYRNYQKLTLQESPGTVPAG 401
                 7***************************************998843..332344445559*..99********************************** PP

                 ----EEEEEEEGGGTT---TT-EEEEEEEEEE CS
      MCM_OB  93 elPrslevileddlvdkvkPGdrvevtGiyra 124
                 +lPr+ evil  dl+dk+kPG+++evtGiyr+
  CCE29572.1 402 RLPRTREVILLWDLIDKAKPGEEIEVTGIYRN 433
                 ******************************97 PP

>> MCM2_N  Mini-chromosome maintenance protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2  26.3   2.1e-37   3.8e-34       2     152 ..      60     194 ..      59     195 .. 0.93
   2 ?   -0.6   0.0      0.82   1.5e+03     131     150 ..     225     255 ..     198     256 .. 0.63
   3 ?   -2.5   0.1       3.2   5.7e+03      57      76 ..     601     620 ..     599     627 .. 0.79

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 2.1e-37
      MCM2_N   2 deeaeveeediadldevaaeeeedgeDLfndnledDyreneeqDrYdlddidDendldeldaaeRraieaeLdrRDrelkaraarrsklaafLqdddde 100
                 d+e e+++ di+dld    e  +d+ DLf++ +e+Dyr+  ++D+Y+ + idD++d+d +d++eRr iea+L+rRDre+     r++ +aafL  dd+e
  CCE29572.1  60 DDEPEIQD-DIDDLD----EMADDDVDLFREGFEADYRAR-QDDTYEGAGIDDDGDYDSMDMGERRMIEARLSRRDREVA---RRQRIPAAFLPGDDEE 149
                 7899***9.******....6789***************87.89************************************4...3455599******975 PP

      MCM2_N 101 delddelglpiqkrRrRreydedededldeadideleeelsleslaDvkads 152
                     ++++l++q+rRrR++yded d+ ++    d +eeelsle+l Dvka++
  CCE29572.1 150 ----GDIDLTAQPRRRRHHYDEDPDDVMET---DIMEEELSLEALGDVKASN 194
                 ....78***********************8...99***************87 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.82
      MCM2_N 131 a...........dideleeelsleslaDvka 150
                             +i++++ e+s+e+l++ ka
  CCE29572.1 225 SsvygnrirtlgEINAETLEVSYEHLSESKA 255
                 2346666777768999999*******99887 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.2
      MCM2_N  57 dldeldaaeRraieaeLdrR 76 
                 ++d+++ ++R  i ++++++
  CCE29572.1 601 EFDKMNDQDRTSIHEAMEQQ 620
                 68899999999998888765 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.6   4.9e-28   8.7e-25       1      87 []     740     824 ..     740     824 .. 0.96

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 4.9e-28
                 HHHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHHTSSTSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHHHHH CS
     MCM_lid   1 ellrkYiayarekikPklseeakeklseaYvelRkeeedskrksipitvRqLesliRLseAlAklrlsevvteedveeairllkesl 87 
                 ellrkYi y+re+++Pkl +++++k+++ + ++R+e+   ++ ++pitvR+Le++iR+seA++++rlse+++++d+++ai ++ es+
  CCE29572.1 740 ELLRKYILYSRERCHPKLYHMDEDKVARLFSDMRRESL--ATGAYPITVRHLEAIIRISEAFCRMRLSEYCSAHDIDRAIAVTVESF 824
                 68*********************************885..489***************************************98875 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.1     2e-17   3.6e-14       1     103 [.     209     299 ..     209     300 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 2e-17
       MCM_N   1 qekFedFLeefkddsededgekkYrdqlqemaerekttLevdlddLaafdeeLaeailenpkeylplleealkevvkklepsykddakefpaeltrrfq 99 
                 +++F+ FL ++    +d +g+++Y ++++++ e + +tLev++++L++ +  La  + + p e+l+l++e++ evv  ++p+y++         + +++
  CCE29572.1 209 RREFKAFLTSY----TDMSGSSVYGNRIRTLGEINAETLEVSYEHLSESKAILAYFLANAPAEILKLFDEVAMEVVLLHYPDYERI--------HSEIH 295
                 689********....56679**************************************************************9998........88888 PP

       MCM_N 100 vrfk 103
                 vr++
  CCE29572.1 296 VRIF 299
                 8876 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.039        70      21      41 ..     528     548 ..     519     557 .. 0.85
   2 !   27.5   0.0   9.9e-10   1.8e-06      97     199 ..     584     676 ..     554     684 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.039
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakr 41 
                   G  n+ll+G pG+ K+ + k 
    CCE29572.1 528 GDINVLLLGDPGTAKSQVLKY 548
                   7889***********988765 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 9.9e-10
  Mg_chelatase  97 pkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpcgklkdkekectcsekeierYlsklsgplldRi 193
                    + G++ la +G  ++DE+ +++ +   ++ e +e+++++is+a   ++  ar+ ++aa+Np   g++++++           +   +l +p+l R+
    CCE29572.1 584 LEGGALVLADRGTCLIDEFDKMNDQDRTSIHEAMEQQTISISKAGIVTTLQARCGIIAAANPQ-GGRYNSTQP---------FSANVNLTEPILSRF 670
                   56799********************************************************95.455553321.........122345777777777 PP

  Mg_chelatase 194 dlqvev 199
                   d+   v
    CCE29572.1 671 DILCVV 676
                   776665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.8e-09   3.3e-06       1     129 [.     531     652 ..     531     662 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.8e-09
                 EEEEE--SSSSHHHHHHHGGGGB.......S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.......nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleer 92 
                 +vlL+G+pGt+Ks++ +++ +         ++    v lt++ +++ l+ ++ +       + ++lv       ++++DE+++++++   s +  +e++
  CCE29572.1 531 NVLLLGDPGTAKSQVLKYVEKTAhravfatGQGASAVGLTASVRRDPLTSEWTL-------EGGALV--LADRGTCLIDEFDKMNDQDRTSIHEAMEQQ 620
                 69*************999887776667888999999999999999999999996.......889999..5566789*********************** PP

                 EEE..-SSSEEE---......-EEEEEESS--.-TT- CS
       AAA_5  93 rllleeggelvkaknddllerfrviatanpldrslne 129
                 ++++ + g ++  ++        +ia+anp+ ++ n+
  CCE29572.1 621 TISISKAGIVTTLQAR-----CGIIAAANPQGGRYNS 652
                 ***9999988888775.....9*********944443 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   7.5e-06     0.013      17     144 ..     524     646 ..     516     660 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.5e-06
                      HHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS-HHHH CS
  Sigma54_activat  17 kvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgGtlfLDeigelplelQ 110
                      + ++ d++vl++G+ Gt K+ + + + ++ +   + + a   +a +  l +s    +++   t   + + G++  ad Gt ++De  +++ +  
       CCE29572.1 524 HHIRGDINVLLLGDPGTAKSQVLKYVEKTAH---RAVFATGQGASAVGLTAS----VRRDPLTSEWTLEGGALVLADRGTCLIDEFDKMNDQDR 610
                      56778899***********999888776655...456677888889999998....89999999999999************************ PP

                      HHHHHHHHHSEE..ESBTSSSEEE--EEEEEEESS- CS
  Sigma54_activat 111 ekLlrvlqegev..ervGsskeikvdvriiaatned 144
                      + + ++++++++  ++ G  ++ ++ + iiaa+n +
       CCE29572.1 611 TSIHEAMEQQTIsiSKAGIVTTLQARCGIIAAANPQ 646
                      *******9997522799***************9865 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.91   1.6e+03      47      77 ..     431     463 ..     423     482 .. 0.70
   2 ?   12.9   0.0   4.3e-05     0.076       2     113 ..     532     646 ..     531     657 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.91
       AAA_3  47 feeke.kefefkkG.pvfanllladeinrappk 77 
                 ++++   +++ ++G pvfa +l a+++ +a  +
  CCE29572.1 431 YRNNYdAQLNNRNGfPVFATILEANNVIKAHDQ 463
                 4433326777777779******99999887655 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.3e-05
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdi..lGtevfeekekefefkkGpvf.an..llladeinrappktqsalleameerqvtveg 95 
                 vll g PG+ak ++ k + k+     +r  f++    s +  + +   +  ++e++++ G+++ a+    l de ++ + + ++++ eame++++++++
  CCE29572.1 532 VLLLGDPGTAKSQVLKYVEKT----AHRAVFATGQGASAVglTASVRRDPLTSEWTLEGGALVlADrgTCLIDEFDKMNDQDRTSIHEAMEQQTISISK 626
                 788889999998887766554....455555554443333103333334456999999998762333489************************99976 PP

       AAA_3  96 e..thklpepflvlatqnPi 113
                 +   ++l+    ++a+ nP 
  CCE29572.1 627 AgiVTTLQARCGIIAAANPQ 646
                 5226799***********94 PP

>> Zn_ribbon_2  Putative zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   0.00036      0.65       2      46 ..     342     380 ..     341     399 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00036
  Zn_ribbon_2   2 CqsCGmplkkeedlgteadgsksedYCkyCykdGeftepdltmee 46 
                  C  CG+ l     + +e++ + + +YC+ C   G ft    + e+
   CCE29572.1 342 CGKCGITLG---PFQQESNVEVKLTYCQSCQSRGPFTV---NSEK 380
                  888999995...45578999*****************8...3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5916.25
//
Query:       CCE29573.1  [L=876]
Description: uncharacterized protein CPUR_03420 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 6670.15
//
Query:       CCE29574.1  [L=893]
Description: uncharacterized protein CPUR_03421 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 6381.07
//
Query:       CCE29575.1  [L=928]
Description: uncharacterized protein CPUR_03422 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (928 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 6669.26
//
Query:       CCE29576.1  [L=532]
Description: choline permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-41  142.0  47.9    2.9e-41  141.7  47.9    1.0  1  AA_permease_2  Amino acid permease
    5.7e-10   38.4  44.1    1.3e-09   37.2  44.1    1.5  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7  47.9   3.3e-45   2.9e-41       1     424 [.      41     480 ..      41     483 .. 0.82

  Alignments for each domain:
  == domain 1  score: 141.7 bits;  conditional E-value: 3.3e-45
  AA_permease_2   1 lsllsafalvigsv.igsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaaf....gkkvaflsawfnwfayv 89 
                    +++lsa+++ +g++ + +gi+ +    +  gg  l++w++++++++ la +  +aEl+sa+p+ gG+y +++++      + + +++a+++w+++v
     CCE29576.1  41 FNTLSAIGIGYGTTnTAVGILLVLgsTIPLGGSPLFFWGFLVMIMIALATATSLAELASAMPHAGGQYLWVSQLApancRRGLSYCTAMLSWLGAV 136
                    6899999999999964456655522255558888***********************999**************7433367777************ PP

  AA_permease_2  90 pvlasil...svaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtf 182
                    ++ as +   s ++  ++ +l+pd++ ++w+ ++ ++ +l +++l ++   + +  i +++  ++    l++++  +l++ ++g+ s   +  +t+
     CCE29576.1 137 ATGASAClsvSTGVCDIIAFLNPDFVYQRWMGFV-GFQVLNFLTLGCAAFEHALPGISKTTLFFSCASCLAVFV--ALFATSHGHVSARDFFFTTV 229
                    *9988653215577778999*********99998.666666666666666677777888888888865555555..44444444444445556688 PP

  AA_permease_2 183 fpngwp...gvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvva 273
                    + +gw+   g+l+g++++ ws++  ++a++ +ee++   ++vpk++++ +++ +++++lv +a+++ +p+   ++ +n  s++ lf++ + ++++a
     CCE29576.1 230 NVSGWKdgiGFLVGIGGINWSLCCLDVATHLAEEIPSpaTNVPKVLMWTVAVGALSGMLVIVAIFANLPIIDANQ-DN--SAVVLFYRISSSRALA 322
                    999**986669***********************8877589*****************************77765.44..34789****9999999 PP

  AA_permease_2 274 iivvilialsllgaintavigssrvlealardgvlP..rffakvn..kfgspiraiiltaivslillllfllassaaynfllsvsslgliisylll 365
                    + + + i +  +ga+ +  i++sr+++a++rd+++P  r++a+v   +f++p+ ++  +  +s ++++l+l+ s+ a+n l ++++l+l++sy ++
     CCE29576.1 323 VGILVPILITTAGAVWSMQIWQSRIAWAISRDRGFPlhRYLARVLpaPFHTPFWSLLWSSACSALFGCLYLG-SEVAFNSLIATGVLLLYFSYSIP 417
                    99999***************************************8645****99999999999899999987.59********************* PP

  AA_permease_2 366 iigalilrkkrphlkrpgk....ilvaiigalfllfllvalffppkgpatqssliytiiltva 424
                    +i++l+  +   + + +++    ++ + +++ +++++ ++ +fp    +  ++++y+ +++++
     CCE29576.1 418 VILVLFRGRSTFRHGPFWFpvlgYISNVVMLAWTVVAAIFYCFPYHSVVQAEKMNYASLVLGV 480
                    877775544444447777866667888888999999999999**99999********666655 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2  44.1   1.5e-13   1.3e-09      13     460 ..      58     491 ..      44     501 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.5e-13
  AA_permease  13 tglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasr....flgpelGfviGlnylfswitvlaleltaasi....liq 102
                  +g+++ lg+++  +G    + ++l+++++ ++++ sl+e+a+++p++gg y ++s+    +  + l++ ++++ ++  +++ a ++  +s     +i 
   CCE29576.1  58 VGILLVLGSTIPLGGSPLFFWGFLVMIMIALATATSLAELASAMPHAGGQYLWVSQlapaNCRRGLSYCTAMLSWLGAVATGASACLSVSTgvcdIIA 155
                  7899999999999999899*******************************988876222267788899999998888888888888766643222555 PP

  AA_permease 103 fwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeegafkn 200
                  f+  ++d  ++  +g v + vl +++l  + ++ +   i    ++ + ++ + v++   a  ++++g    ++++  ++f    ++g+++       +
   CCE29576.1 156 FL--NPDFVYQRWMGFVGFQVLNFLTLGCAAFEHALPGISKTTLFFSCASCLAVFV---ALFATSHG----HVSARDFFFTTVNVSGWKD-----GIG 239
                  66..8888877777766666666666655555555555544444444444444443...23333333....2222233333333334222.....268 PP

  AA_permease 201 fisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinavilt 298
                  f++++  ++ ++      + +a+E+ +P+ ++Pk+ + +v   +++  l++++i + +p  d +  n      s +v+f + s +++la+ i + il+
   CCE29576.1 240 FLVGIGGINWSLCCLDVATHLAEEIPSPATNVPKVLMWTVAVGALSGMLVIVAIFANLPIIDANQDN------SAVVLFYRISSSRALAVGILVPILI 331
                  9*************************************************************99999......77899******************** PP

  AA_permease 299 aalssansslysasRvlyslakdglaP..kvlkkvskr..gvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwll.iilsylrfR 391
                  ++ +++ s+ +  sR+ ++ ++d+ +P  ++l++v     + P  ++l s+++s+l+  + +l ++  ++fn l+a   l   + + + +il + r R
   CCE29576.1 332 TTAGAVWSMQIWQSRIAWAISRDRGFPlhRYLARVLPApfHTPFWSLLWSSACSALFG-CLYLGSE--VAFNSLIATGVLLLYFSYSIpVILVLFRGR 426
                  *****************************99998854334******************.9999999..********9999999999883555556*** PP

  AA_permease 392 kalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfl 460
                   +++    +   lg+++ +++ ++++v   + +i+    +  ++++ k+ + + +  ++a++++ l+f 
   CCE29576.1 427 STFRHGPFWFPVLGYISNVVM-LAWTV---VAAIFYCFPYHSVVQAEKMNYASLVLGVIALFICTLWFS 491
                  ***************999754.44555...555555556666667778888888888889998888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1092  (0.0609069); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3812.79
//
Query:       CCE29577.1  [L=94]
Description: uncharacterized protein CPUR_03424 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 758.33
//
Query:       CCE29578.1  [L=199]
Description: uncharacterized protein CPUR_03425 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1437.64
//
Query:       CCE29579.1  [L=253]
Description: uncharacterized protein CPUR_03426 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-56  190.7   1.5    3.4e-56  190.3   1.5    1.2  1  FTA4      Kinetochore complex Fta4 of Sim4 subunit, or CENP-5


Domain annotation for each model (and alignments):
>> FTA4  Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.3   1.5   1.9e-60   3.4e-56       1     200 [.       7     206 ..       7     207 .. 0.94

  Alignments for each domain:
  == domain 1  score: 190.3 bits;  conditional E-value: 1.9e-60
        FTA4   1 tilelKqsfldtqvriLsqPLapsrewrsaneeeeendeelsekavddvLaklNhrlkqhnrrvyspqairhvaeQidklYlea........edeklei 91 
                 t+ +lK+sf+ +q+++LsqPLapsr+w +ane++++    ++ + +dd+L+ lN++++qh+rrvy+pqa  +vaeQi ++Yl++        ++++ +i
  CCE29579.1   7 TVPSLKESFISAQTNLLSQPLAPSRTWLRANESSNQP---IPARLLDDILFTLNQTIQQHCRRVYPPQASYNVAEQISSSYLRDaedrvrglKESESTI 102
                 7899******************************977...*******************************************9988888877777777 PP

        FTA4  92 evnedltkeelIkeLPesweveekeaeeepleallerYaelrarLielserrqqlqarlarlrklkallepflgsedpqesvqenlvtrdgeleaEler 190
                  ++ d++ +++I++LP++w+ e k+ +++p  a  e+Y+  ++rL+el e+r+ql+ r+++lr+++a ++p+  s ++++++q+nl+t++g++e+El+ 
  CCE29579.1 103 GRELDFVADNSIEALPTAWPIE-KDIDNDPAAA--EEYESFVQRLTELTEQRRQLRLRVQQLRRIEASVKPL--SATDDNNIQDNLITKNGPVEEELAT 196
                 7*******************65.7777778888..*************************************..45789******************** PP

        FTA4 191 mRvLlarvag 200
                 mR Ll r++g
  CCE29579.1 197 MRSLLVRITG 206
                 *******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      700  (0.0390429); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 1963.06
//
Query:       CCE29580.1  [L=576]
Description: uncharacterized protein CPUR_03427 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.1e-112  376.1   0.0   3.9e-112  375.8   0.0    1.0  1  RPE65     Retinal pigment epithelial membrane protein


Domain annotation for each model (and alignments):
>> RPE65  Retinal pigment epithelial membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.8   0.0  2.2e-116  3.9e-112       7     460 ..      48     570 ..      43     573 .. 0.86

  Alignments for each domain:
  == domain 1  score: 375.8 bits;  conditional E-value: 2.2e-116
                 -EEEC--E..EEE---TT--EEEEEEEEE.ESCET....TCCSSSGGGSEEEEEEEEE.......CTTEEEEEEEE---HHHHHHHHHTS......... CS
       RPE65   7 evpeplevkvieGeiPawlkGtllRnGpgkpevge....dgkvshwFDGdGmlhrfef.......kdgkvtyrnRfvrtdaylaerkagk......... 85 
                 +++e +++ v  G+iP+w++Gt++R+Gpg+  +++    +++vshwFDG++ +h+f++       ++ +vty++Rf ++++y +  ++++         
  CCE29580.1  48 NQRESVQLGV-NGHIPSWAAGTFYRTGPGQSVIENtsrgTHHVSHWFDGFAQVHKFDLipslldeTNCSVTYTSRF-QSEEYIKFVRRKGwradlsfgq 144
                 5677789999.7*****************99888899999********************999986688*******.**********999888887777 PP

                 .............--SBSTTTTSB-----SEEE..................EETTEEEEEETTCEEEEEETTTTEEEEE--CCC.....TTS-B...-S CS
       RPE65  86 .............slfdglpakkkknnantnvv..................yhggrllalteagkpyeidpetLetlgkvdldg.....eseaf...tA 145
                              slf     + ++ n n++v+                  +   +l+++t+++ ++++dp tLe+lgk+++++     +       +A
  CCE29580.1 145 rsdpcvglfakfmSLF-----TPRQINNNVTVLpnipgmmqdtdtshkdfqNEPSNLYVCTDNATLQKLDPITLEPLGKATQRSlhpdlK---GpmsCA 235
                 7777775554444333.....2344467777777888888888888877778999*************************9964555543...0446** PP

                 S-EEETTCEEEEEEEECCTCECEEEEEEE-.T...T-EEEEEE.EECS..S..------EEE-SSEEEEEE--EECHC.H....CCCTCGGCE.EE-TT CS
       RPE65 146 Hpkvdpetgelynfglslgkppsvtysvfdvaaaidksrevki.klpge.klkpayiHdfalTenyvvlvelplklnlkk....gkksggdal.ewdpe 237
                 H+++dpetg+l+nf+l++g ++  ty++f+v+aa   s++v+i    ++ +l++ayiH+f+lT+n+v+l+++  ++ +++    + +++++a+ ++d++
  CCE29580.1 236 HAQRDPETGDLFNFNLEPG-RT-ATYRIFRVNAA---SETVDIlATIADkELAAAYIHSFFLTDNHVILCVPTSHYGWNGlkvlWERNIIEAIkPFDTN 329
                 *****************98.66.49*****9933...5566664333444789**********************9998899998899*****9***** PP

                 S-EEEEEEETT.TT--GG....EEEEE--SEEEEEEEEEEET........TCEEEEEEEEE.SS.--STTS-CT.T----.-....GG....TGGG-EE CS
       RPE65 238 kptrfgvipRr.gekegv.akfrwfeteaffvfHtaNayeee.......edgevvvdlcryedaevldnlylenlrsrkgeak.keek....aeesqsr 322
                 ++++++v++Rr g  +gv a   +f t+a f+fHt+Na+ee+       + +e+++d+++ye+++++++ly++ l +r+g+a+          e++q +
  CCE29580.1 330 EDCKWLVVDRRhG--RGVvA---RFSTPASFFFHTINAFEEKikdengnQVTELYMDCIEYENTNIMHMLYYDILMDRNGAAAqG--LakcgLESAQMY 421
                 ***********65..45545...56778******************996666688******************998888877542..134664478999 PP

                 EEEEEEETTTTTCEECE..........EEEEESS-EEEEE--GGGTTS--SEEEEEE-SSTTSS-..-.-EEEEEET-TTTE...........EE--EE CS
       RPE65 323 lrryrldlktgsateeke.........eaalsdrslEfPrinpaysgrkyryvYgasasggsdkaskf.dglvkvDletkgrea......eghypgEpi 405
                 l+r ++ +++    ++k+          + + ++ +E+P inp+++g++yry+Yg++  g+     +f d+lvk+Dl+t+  ea       gh pgEp+
  CCE29580.1 422 LVRHKFTMQNLPMPHDKNmysqraeqvFSIPGPHVGELPAINPDRAGKAYRYAYGVGNGGR----GMFmDCLVKTDLQTR--EAliwngpVGHSPGEPM 514
                 *****9998888877777888888888888999999**********************665....5677********999..7789***99******** PP

                 EEESTTTSSTT-EEEEEEEEET.TTEEEEEEEETTBCCCSEEEEESS---S--BEE CS
       RPE65 406 FVPragateEDdGvllsvvlde.eersellvldAktltevArvelpqrvpygfHGt 460
                 F+Pr+g+++EDdGv++++vld+  ++s+ll+ldA++l+e++r+e ++++ +++HG+
  CCE29580.1 515 FIPRPGGAREDDGVIMTLVLDSnGQKSYLLCLDAENLEELGRAETDFPIAFTLHGS 570
                 ********************99*********************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4015.61
//
Query:       CCE29581.1  [L=158]
Description: uncharacterized protein CPUR_03428 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-08   33.6   0.0    5.8e-08   33.0   0.0    1.3  1  4HBT         Thioesterase superfamily
    1.3e-07   32.1   0.0    1.7e-07   31.8   0.0    1.1  1  4HBT_2       Thioesterase-like superfamily
     0.0002   20.7   1.3    0.00029   20.2   1.3    1.2  1  Acyl-ACP_TE  Acyl-ACP thioesterase


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   9.7e-12   5.8e-08       2      73 ..      31     107 ..      30     113 .. 0.94

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 9.7e-12
                 SSB-HHHHHHHHHHHHHHHHHHTTST.....TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEET CS
        4HBT   2 GvvhgGvylallDeaagaalrslggr.....gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrde 73 
                  ++++ vy  l+D+a  a+l +++        + + v++ s d+++pv ++++ +v + vl+lgr+s+++e  ++ +
  CCE29581.1  31 HHMNNSVYNFLFDSAVNAYLIHHCNLnppssPHYPLVARTSTDYFSPVSYPSVAEVGVCVLKLGRASVTFELGLFEQ 107
                 699********************************************************************988766 PP

>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.8e-11   1.7e-07       2     113 ..      23     131 ..      22     143 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2.8e-11
      4HBT_2   2 rpndvDlnghlnnarylryleearvkflertglksrsiarr.giglilssahvryrrplkfpdrltvefrvididaktliiehrflsnadgkkaarvee 99 
                 r+nd D++ h+nn+ y+  +++a+  +l  ++   ++++ +    + ++++ ++y +p+ +p   +v + v +  + ++ +e  +  +  +   a +e 
  CCE29581.1  23 RWNDNDMYHHMNNSVYNFLFDSAVNAYL--IHH-CNLNPPSsPHYPLVARTSTDYFSPVSYPSVAEVGVCVLKLGRASVTFELGLFEQGVQDVKAVCEF 118
                 9****************99*********..344.35555551566667777************************************5555559***** PP

      4HBT_2 100 rivvmdygkrskka 113
                 ++v++ + ++ ++a
  CCE29581.1 119 VHVFVERATG-RTA 131
                 ******9995.443 PP

>> Acyl-ACP_TE  Acyl-ACP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   1.3   4.8e-08   0.00029     145     185 ..       6      45 ..       2      56 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.8e-08
  Acyl-ACP_TE 145 tkvleakeeseekelkvrysDlDlnqHvNNvkYlewilevl 185
                  +k+  + +  ++ +++ r+ D D+++H+NN++Y +++++++
   CCE29581.1   6 KKTRTRADYPFILDYRTRWNDNDMYHHMNNSVY-NFLFDSA 45 
                  566778888899*********************.5666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1265.78
//
Query:       CCE29582.1  [L=567]
Description: probable RIB2-DRAP deaminase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-30  106.2   0.4    4.8e-30  104.8   0.0    1.9  2  PseudoU_synth_2  RNA pseudouridylate synthase
     0.0057   16.8   0.2      0.012   15.8   0.2    1.5  1  Auto_anti-p27    Sjogren's syndrome/scleroderma autoantigen 1
  ------ inclusion threshold ------
      0.028   14.3   0.0      0.065   13.1   0.0    1.6  1  Ub-Mut7C         Mut7-C ubiquitin
       0.16   12.2   1.6       0.27   11.5   1.6    1.2  1  DUF4770          Domain of unknown function (DUF4770)
       0.78    9.1   3.1        1.5    8.3   3.1    1.4  1  BIRC6            Baculoviral IAP repeat-containing protein 6
        1.4    9.0   5.2        2.6    8.0   5.2    1.4  1  Mito_fiss_reg    Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.5       1.1   3.3e+03      95     107 ..      69      80 ..      42     103 .. 0.49
   2 !  104.8   0.0   1.6e-33   4.8e-30       1     159 [.     209     403 ..     209     404 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
  PseudoU_synth_2  95 ikkkiskdtekqe 107
                      ++ + ++ ++ ++
       CCE29582.1  69 TDDSKKT-HKTKK 80 
                      2222222.11111 PP

  == domain 2  score: 104.8 bits;  conditional E-value: 1.6e-33
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeega 94 
                      d++v+nKP+gvpv+p +     k ++  +    +++  +++++++RLD+ tsG++ +Aks +aa+kl +++++r+vrK+Y+a v+g+ +e    
       CCE29582.1 209 DMIVINKPSGVPVHPAG---RYKFNSVLEIMMAERGPLFRPYPCNRLDRLTSGIMFVAKSVQAADKLGNQIKARTVRKEYVARVVGEFPEGDVV 299
                      579**************...88888889999999999************************************************999999999 PP

  PseudoU_synth_2  95 ikkkiskdtekqegarrkaeeldgkkavtylkvlksgs..........................................seksakvslvelel 146
                      ++++i      + +  +++ + +gk+a+t +k l++                                            + ++ ++s v++ +
       CCE29582.1 300 CDQPILS---ISPKLGLNRVRANGKSARTAFKRLAYYPptaaaaaaddvhdssgsekekdsgdkghndngnsdedvkgrpWATKRGYSIVRCLP 390
                      9999999...899999999999************9999999**************************************999************ PP

  PseudoU_synth_2 147 etGrkhQiRvhla 159
                      +tGr+hQiRvhl+
       CCE29582.1 391 VTGRTHQIRVHLQ 403
                      ***********97 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   3.9e-06     0.012      12      29 ..     473     490 ..     472     495 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.9e-06
  Auto_anti-p27  12 tMLaetCpvCgvPLmrdr 29 
                    +M++etC+vC +PL  d+
     CCE29582.1 473 KMTGETCSVCDTPLYSDP 490
                    7*************9987 PP

>> Ub-Mut7C  Mut7-C ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.2e-05     0.065      50      72 ..     164     186 ..     160     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.2e-05
    Ub-Mut7C  50 elilvnGesvgfshiledGdrva 72 
                 + i vnG+svg++h++++Gd+v 
  CCE29582.1 164 GDIFVNGKSVGPDHVIQNGDLVS 186
                 6799****************996 PP

>> DUF4770  Domain of unknown function (DUF4770)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.6   8.9e-05      0.27      82     164 ..      57     162 ..      39     169 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.9e-05
     DUF4770  82 kerkkqekkkkkrlklkkkkekkrkekekkkkknkkkls......................pYfekqvrpkttr...skkfss....kppelkvsfpey 151
                 k r+       +r+k  ++  +k+++k kk++knkk+++                      +Yfe + r+ ++     + + +     ++ ++v  +e+
  CCE29582.1  57 KGRND------QREKAGETDDSKKTHKTKKQTKNKKQMNkgqdcgadevritpvaaiwpppYYFEDNLRRVRPYhwtYNTYCKerwrGKTLMEVFVSEF 149
                 22222......222222223333333333333333333355667799999**********999998776665542224444445654467778877888 PP

     DUF4770 152 pkekkplyeipne 164
                 ++++++ y++  e
  CCE29582.1 150 RDRPAEYYRMTME 162
                 8888888887766 PP

>> BIRC6  Baculoviral IAP repeat-containing protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.1   0.00049       1.5     112     153 ..      57      98 ..      36     107 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00049
       BIRC6 112 aksnsqelrasitDDskdqeelrsltDDskeaesekdsqsss 153
                 +  n q+++a  tDDsk+ +++++ t ++k+ ++ +d  +++
  CCE29582.1  57 KGRNDQREKAGETDDSKKTHKTKKQTKNKKQMNKGQDCGADE 98 
                 334556677778888888888888888888887766655555 PP

>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.2   0.00088       2.6     166     224 ..       8      79 ..       2      94 .. 0.38

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00088
  Mito_fiss_reg 166 ssaspslepsss.lp.pppppppppi......................ppespsvldssnsaielikqrrgakktsseesdss 224
                    ++a+p l+ ++  lp p+pp++pp++                                  +  + ++++ g++ +s+++++++
     CCE29582.1   8 APAAPGLKITTPaLPpPSPPSSPPSPllmdfltadeiaktkeesraasN-----------KGRNDQREKAGETDDSKKTHKTK 79 
                    4444544322324341444444444356666665555433333333221...........22222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1404  (0.0783089); expected 358.6 (0.02)
Passed bias filter:                      792  (0.0441742); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 3892.04
//
Query:       CCE29583.1  [L=297]
Description: uncharacterized protein CPUR_03430 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0095   16.0  12.3      0.026   14.6  12.3    1.7  1  bZIP_1         bZIP transcription factor
  ------ inclusion threshold ------
       0.12   12.5   5.3        1.9    8.7   0.3    2.3  2  DMPK_coil      DMPK coiled coil domain like
       0.36   11.0  15.7        2.4    8.3   1.4    2.3  2  bZIP_2         Basic region leucine zipper
        3.6    7.5  11.2       0.31   11.0   2.5    2.2  2  JAKMIP_CC3     JAKMIP CC3 domain


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6  12.3   5.8e-06     0.026       5      62 ..      31      94 ..      28      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.8e-06
                XXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHH......HHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  5 KrekrkqkNReaArrsRqRKqaeieeLerrvkaL......ekeNksLkseleelkkevekLksk 62
                + +++++  Rea+r+ R R ++ ie+Le + ++L      +k  ++L+ +++ l++e  +Lk+ 
  CCE29583.1 31 QLARKRANDREAQRAIRARTKEHIERLEHELEELrsnhgrDKTVQDLIRRNKALEDELRQLKQS 94
                5689999***************************433333356789***************985 PP

>> DMPK_coil  DMPK coiled coil domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.8    0.0034        15      45      60 ..      51      66 ..      33      67 .. 0.90
   2 ?    8.7   0.3   0.00041       1.9      35      55 ..      75      95 ..      70      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0034
   DMPK_coil 45 eeeleqLkkemEelra 60
                +e++e+L  e+Eelr+
  CCE29583.1 51 KEHIERLEHELEELRS 66
                68*************8 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00041
   DMPK_coil 35 keaEkknreLeeeleqLkkem 55
                ++   +n++Le+el+qLk+ m
  CCE29583.1 75 QDLIRRNKALEDELRQLKQSM 95
                666689************998 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.1   0.00088       3.9       7      39 ..      33      66 ..      28      68 .. 0.87
   2 ?    8.3   1.4   0.00055       2.4      32      53 ..      72      93 ..      67      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00088
                XXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  7 erRr.kNreAarrsRekkkakeeeleervkeLee 39
                 r+r + reA r  R + k++ e le++++eL++
  CCE29583.1 33 ARKRaNDREAQRAIRARTKEHIERLEHELEELRS 66
                5666599*************************85 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00055
                HHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 32 ervkeLeeeNaqLrqkveqLek 53
                ++v++L ++N +L+++++qL++
  CCE29583.1 72 KTVQDLIRRNKALEDELRQLKQ 93
                79******************97 PP

>> JAKMIP_CC3  JAKMIP CC3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.5   6.9e-05      0.31      92     163 ..      31      93 ..      13      96 .. 0.70
   2 ?    1.3   1.5     0.061   2.8e+02     115     152 ..     240     273 ..     226     288 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.9e-05
  JAKMIP_CC3  92 lLreklggeldaerelkareqleselrktkskikdLeeaLaqkGqdskwveekQalikrnqeLvekikklee 163
                  L  k +  ++a+r ++ar   ++ +++ + +   Lee  +++G d+  v++   li+rn+ L + +++l++
  CCE29583.1  31 QLARKRANDREAQRAIRART--KEHIERLEHE---LEELRSNHGRDK-TVQD---LIRRNKALEDELRQLKQ 93 
                 56666666777777777776..6666666666...444445667764.4444...89999999999999987 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.061
  JAKMIP_CC3 115 selrktkskikdLeeaLaqkGqdskwveekQalikrnq 152
                 ++++++  +   +++a +++ + s+ ++++Q    ++q
  CCE29583.1 240 EDVHSMMGNQGYMQQAAHHQHHPSHQQQQQQ----QHQ 273
                 4555555555668889999999999999988....444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1903  (0.106141); expected 358.6 (0.02)
Passed bias filter:                      738  (0.0411624); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2100.65
//
Query:       CCE29584.1  [L=47]
Description: uncharacterized protein CPUR_03431 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 375.38
//
Query:       CCE29585.1  [L=573]
Description: related to nitrate reductase [NADPH] [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-44  150.6   0.0    6.5e-44  149.6   0.0    1.5  2  Oxidored_molyb   Oxidoreductase molybdopterin binding domain
    4.6e-20   72.0   2.7    8.6e-20   71.2   2.7    1.4  1  Mo-co_dimer      Mo-co oxidoreductase dimerisation domain
     0.0057   15.2   0.0     0.0098   14.4   0.0    1.3  1  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.6   0.0   1.1e-47   6.5e-44       1     169 [.     190     370 ..     190     373 .. 0.93
   2 ?   -3.9   0.0       1.6   9.3e+03      10      35 ..     511     535 ..     503     539 .. 0.71

  Alignments for each domain:
  == domain 1  score: 149.6 bits;  conditional E-value: 1.1e-47
                     SS----.GCCC-EEEEESTCSSEEEEEHHHHHH...C-EEEEEEEEE-TTTTHHHHC.HH.....--SS----TTSEEEEEEEEEEHHHHHHHTT CS
  Oxidored_molyb   1 hgavpkvdpekwrlevdglvekplslslddLka...lpavevtatlqCagnrrkeln.kk.....kvkglqwgagavsnaeWtGvrlrdvLekag 86 
                     hg +p++d++++r+++dglv++p  ++lddL++   + + e+t+tlqC+g rr e+  k      +v  + w +ga+++a + Gv+l++v++++g
      CCE29585.1 190 HGGIPRIDKKHYRFSLDGLVARPGGFTLDDLMDtsrFARMERTITLQCSGTRRIEQVlKYagqgdEVPQAPWAEGAIGTASYVGVSLKKVIKECG 284
                     899****************************866679****************7777455899999***************************96 PP

                     B-ETT..EEEEEEEEE-T...CCTEEEEEEEHHHHCTTT-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEESS--- CS
  Oxidored_molyb  87 vkkpearhvvfegadeel...eeskygasiplekaleddvlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsdeese 169
                          a+h+ f+gad+     +  +y  s+p++k+ +++v+LA+ mnge Lp  hGyPlR++v g++garsvKwl ri+  +e+s 
      CCE29585.1 285 GLIGGAKHLEFYGADTYFkddQAMNYLVSVPWSKVKANEVMLAWSMNGETLPAIHGYPLRVIVLGYIGARSVKWLYRIKAISEPSA 370
                     54589**********766888999************99*****************************************9998875 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.6
                     CC-EEEEESTCSSEEEEEHHHHHHC- CS
  Oxidored_molyb  10 ekwrlevdglvekplslslddLkalp 35 
                     + +r++v   v+k++ l+++ + +++
      CCE29585.1 511 SCHRVSVYS-VNKTRPLTMARMDEFD 535
                     457777765.8888888888887776 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   2.7   1.4e-23   8.6e-20       3     136 ..     397     518 ..     396     520 .. 0.90

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 1.4e-23
                  ---S---EEEE-SS-SEEEE-S....EEEEEEEEEE-STT--EEEEEEESSTTSS-EE-EEESSSSS---..SSTTS-TTS-EEEEEEEEESS...E. CS
  Mo-co_dimer   3 aiydlnvnsvicspeheekvklkeaeetytikGyaysGgGrritrvevsldkGksWklaeieyeedkereakeesretafcwvfweldvevselakek 100
                   i++++v s+i+sp+ +++  ++   ++++ kG+aysGgGr  +rve+s d+G sW ++ +e+  +k          + ++w  w+ +++++  +   
   CCE29585.1 397 QIQEMPVSSAIMSPWTKQVCVHT---GKIRCKGWAYSGGGRWPERVELSADGGFSWYMVPLENLSRK----------RRWTWRTWHFELPCDV-EGWI 480
                  599*************9988886...59*********************************998444..........46***********976.6889 PP

                  EEEEEEEETT--B--S..HHH--TT-------EEEEEE CS
  Mo-co_dimer 101 eilvravDealnvqPe..emiwnvlgmlnnawfrvkik 136
                  ei++r +D+aln+qP   ++ wn    ++ + +rv + 
   CCE29585.1 481 EIVCRCWDNALNTQPPdvRTAWNWGLHVTSSCHRVSVY 518
                  ***************977889*9988889999999885 PP

>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.6e-06    0.0098     339     392 ..     441     494 ..     439     505 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-06
                      B-TTTS-BBSB--STTTBS--SSSC-BTTTTT-CHHHHHHHHCCGGGGGSEEEE CS
  Glyco_hydro_127 339 vsldgksffYvnplesgskklrklystkwdscaCCppnglrtvaklgeyiYaes 392
                      +s dg+   Y+ ple+ s+k+r+ ++t  ++ +C++   +++v++  + +  ++
       CCE29585.1 441 LSADGGFSWYMVPLENLSRKRRWTWRTWHFELPCDVEGWIEIVCRCWDNALNTQ 494
                      6889**************************************998877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 4109.03
//
Query:       CCE29586.1  [L=481]
Description: uncharacterized protein CPUR_03433 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3668.36
//
Query:       CCE29587.1  [L=125]
Description: uncharacterized protein CPUR_03434 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 1035.00
//
Query:       CCE29588.1  [L=172]
Description: uncharacterized protein CPUR_03435 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.096   12.7   0.0       0.19   11.8   0.0    1.4  1  MitoNEET_N  Iron-containing outer mitochondrial membrane prot


Domain annotation for each model (and alignments):
>> MitoNEET_N  Iron-containing outer mitochondrial membrane protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     1e-05      0.19       7      25 ..      52      70 ..      49      74 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1e-05
  MitoNEET_N  7 vvksslPnyLkslPiPkSf 25
                v  +  P yL ++PiP+S 
  CCE29588.1 52 VLAKRDPSYLMNVPIPQSA 70
                556677***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1419.69
//
Query:       CCE29589.1  [L=145]
Description: uncharacterized protein CPUR_03436 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1133.54
//
Query:       CCE29590.1  [L=183]
Description: uncharacterized protein CPUR_03437 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1457.47
//
Query:       CCE29591.1  [L=176]
Description: uncharacterized protein CPUR_03438 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1435.61
//
Query:       CCE29592.1  [L=114]
Description: uncharacterized protein CPUR_03439 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 873.22
//
Query:       CCE29593.1  [L=114]
Description: uncharacterized protein CPUR_03440 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.8   0.1      0.044   14.1   0.0    1.9  2  DUF5122   Domain of unknown function (DUF5122) beta-propeller


Domain annotation for each model (and alignments):
>> DUF5122  Domain of unknown function (DUF5122) beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.4e-06     0.044      24      34 ..      90     100 ..      87     101 .. 0.91
   2 ?   -2.1   0.0      0.28     5e+03       6      13 ..     105     112 ..     103     113 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-06
     DUF5122  24 vRLnaDGslDt 34 
                  R+n+DGs+Dt
  CCE29593.1  90 YRYNPDGSVDT 100
                 7*********8 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.28
     DUF5122   6 IlVaGsft 13 
                 ++V+G ++
  CCE29593.1 105 LFVGGASS 112
                 68999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 920.18
//
Query:       CCE29594.1  [L=113]
Description: uncharacterized protein CPUR_03441 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 955.71
//
Query:       CCE29595.1  [L=225]
Description: related to hexamer-binding protein HEXBP [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-45  148.9  62.1    2.1e-07   30.7   0.9    7.2  7  zf-CCHC    Zinc knuckle
    2.4e-10   40.0  40.3       0.16   11.7   0.9    7.1  7  zf-CCHC_4  Zinc knuckle
    0.00058   19.5  44.1     0.0069   16.1   1.0    7.1  7  zf-CCHC_5  GAG-polyprotein viral zinc-finger
     0.0097   15.9  43.9       0.93    9.5   0.4    6.9  5  zf-CCHC_3  Zinc knuckle
  ------ inclusion threshold ------
       0.03   14.1   0.5       0.03   14.1   0.5    6.9  7  zf-CCHC_6  Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   3.0   2.3e-07   0.00082       1      16 [.       7      22 ..       7      23 .. 0.86
   2 !   23.4   1.4   1.2e-08   4.2e-05       2      17 ..      28      43 ..      27      44 .. 0.94
   3 !   23.9   2.3   8.3e-09     3e-05       2      17 ..      52      67 ..      51      68 .. 0.93
   4 !   30.0   3.7   9.9e-11   3.5e-07       2      18 .]      79      95 ..      78      95 .. 0.94
   5 !   28.8   2.6   2.3e-10   8.1e-07       2      17 ..     131     146 ..     130     147 .. 0.94
   6 !   30.7   0.9   5.8e-11   2.1e-07       2      17 ..     151     166 ..     150     167 .. 0.94
   7 !   28.7   3.1   2.6e-10   9.3e-07       1      18 []     178     195 ..     178     195 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.3e-07
                SCTSSSSSSSSTTTTS CS
     zf-CCHC  1 rkCynCGepGHiardC 16
                r+Cy+CG++GH+a  C
  CCE29595.1  7 RACYKCGNVGHYAEVC 22
                58**********9655 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1.2e-08
                CTSSSSSSSSTTTTST CS
     zf-CCHC  2 kCynCGepGHiardCp 17
                 CynC +pGH +++Cp
  CCE29595.1 28 LCYNCKQPGHESNNCP 43
                6**************9 PP

  == domain 3  score: 23.9 bits;  conditional E-value: 8.3e-09
                CTSSSSSSSSTTTTST CS
     zf-CCHC  2 kCynCGepGHiardCp 17
                +Cy+C++ GH+  dCp
  CCE29595.1 52 QCYHCQGLGHVQADCP 67
                8**************9 PP

  == domain 4  score: 30.0 bits;  conditional E-value: 9.9e-11
                CTSSSSSSSSTTTTSTS CS
     zf-CCHC  2 kCynCGepGHiardCpk 18
                 CynCG+ GHiar Cp+
  CCE29595.1 79 RCYNCGQAGHIARACPN 95
                7***************6 PP

  == domain 5  score: 28.8 bits;  conditional E-value: 2.3e-10
                 CTSSSSSSSSTTTTST CS
     zf-CCHC   2 kCynCGepGHiardCp 17 
                 +Cy+CG+p H+ardC 
  CCE29595.1 131 TCYKCGGPNHFARDCQ 146
                 7**************5 PP

  == domain 6  score: 30.7 bits;  conditional E-value: 5.8e-11
                 CTSSSSSSSSTTTTST CS
     zf-CCHC   2 kCynCGepGHiardCp 17 
                 kCy CG+ GHi+rdC+
  CCE29595.1 151 KCYACGKLGHISRDCT 166
                 8**************8 PP

  == domain 7  score: 28.7 bits;  conditional E-value: 2.6e-10
                 SCTSSSSSSSSTTTTSTS CS
     zf-CCHC   1 rkCynCGepGHiardCpk 18 
                 ++Cy CGe GHi+rdCp+
  CCE29595.1 178 KTCYGCGEAGHISRDCPQ 195
                 58***************7 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.9   4.5e-05      0.16      31      48 ..       6      23 ..       5      24 .. 0.92
   2 !   11.3   0.2     6e-05      0.22      32      48 ..      27      43 ..      26      44 .. 0.92
   3 !   10.9   0.8   8.1e-05      0.29      34      48 ..      53      67 ..      50      68 .. 0.91
   4 !   10.7   0.9   9.5e-05      0.34      34      48 ..      80      94 ..      77      95 .. 0.91
   5 !    4.4   0.3    0.0088        32      33      48 ..     131     146 ..     129     147 .. 0.89
   6 !   10.3   0.7   0.00012      0.44      33      48 ..     151     166 ..     149     167 .. 0.90
   7 !    7.1   0.5    0.0012       4.4      32      48 ..     178     194 ..     176     195 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.5e-05
   zf-CCHC_4 31 rsfCyiCgvlGHsdkrCd 48
                r++Cy Cg +GH ++ C+
  CCE29595.1  6 RRACYKCGNVGHYAEVCS 23
                689************997 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 6e-05
   zf-CCHC_4 32 sfCyiCgvlGHsdkrCd 48
                ++Cy+C   GH+ ++C+
  CCE29595.1 27 RLCYNCKQPGHESNNCP 43
                78**************8 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 8.1e-05
   zf-CCHC_4 34 CyiCgvlGHsdkrCd 48
                Cy C  lGH+ ++C+
  CCE29595.1 53 CYHCQGLGHVQADCP 67
                **************8 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 9.5e-05
   zf-CCHC_4 34 CyiCgvlGHsdkrCd 48
                Cy+Cg  GH +++C+
  CCE29595.1 80 CYNCGQAGHIARACP 94
                **************8 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.0088
   zf-CCHC_4  33 fCyiCgvlGHsdkrCd 48 
                  Cy Cg  +H +++C+
  CCE29595.1 131 TCYKCGGPNHFARDCQ 146
                 6**************7 PP

  == domain 6  score: 10.3 bits;  conditional E-value: 0.00012
   zf-CCHC_4  33 fCyiCgvlGHsdkrCd 48 
                 +Cy Cg lGH  ++C 
  CCE29595.1 151 KCYACGKLGHISRDCT 166
                 6**********99995 PP

  == domain 7  score: 7.1 bits;  conditional E-value: 0.0012
   zf-CCHC_4  32 sfCyiCgvlGHsdkrCd 48 
                 + Cy Cg  GH  ++C+
  CCE29595.1 178 KTCYGCGEAGHISRDCP 194
                 57**************8 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.2    0.0048        17       5      20 ..       9      24 ..       7      25 .. 0.92
   2 ?    3.1   1.2     0.022        79       2      18 ..      26      42 ..      25      43 .. 0.89
   3 ?   -0.6   1.4      0.32   1.1e+03       5      18 ..      53      66 ..      50      68 .. 0.85
   4 !   10.0   1.1   0.00015      0.54       3      18 ..      78      93 ..      76      95 .. 0.93
   5 !   16.1   1.0   1.9e-06    0.0069       1      22 [.     128     149 ..     128     151 .. 0.89
   6 !    9.3   0.7   0.00025       0.9       5      20 ..     152     167 ..     150     178 .. 0.86
   7 !    4.8   0.5    0.0065        23       5      19 ..     180     194 ..     175     198 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0048
                -TTT-SSBS-TTT--- CS
   zf-CCHC_5  5 CpRCkkgkHwardChs 20
                C +C+   H+a  C +
  CCE29595.1  9 CYKCGNVGHYAEVCSA 24
                9***********9976 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.022
                --B-TTT-SSBS-TTT- CS
   zf-CCHC_5  2 pglCpRCkkgkHwardC 18
                + lC  Ck+  H  ++C
  CCE29595.1 26 ERLCYNCKQPGHESNNC 42
                779*********99999 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.32
                -TTT-SSBS-TTT- CS
   zf-CCHC_5  5 CpRCkkgkHwardC 18
                C  C    H+  dC
  CCE29595.1 53 CYHCQGLGHVQADC 66
                88898889*****9 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00015
                -B-TTT-SSBS-TTT- CS
   zf-CCHC_5  3 glCpRCkkgkHwardC 18
                g+C  C++  H ar C
  CCE29595.1 78 GRCYNCGQAGHIARAC 93
                9*************** PP

  == domain 5  score: 16.1 bits;  conditional E-value: 1.9e-06
                 ---B-TTT-SSBS-TTT---SE CS
   zf-CCHC_5   1 ppglCpRCkkgkHwardChskf 22 
                 +p  C +C+   H ardC++++
  CCE29595.1 128 RPATCYKCGGPNHFARDCQAQA 149
                 5778***************987 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.00025
                 -TTT-SSBS-TTT--- CS
   zf-CCHC_5   5 CpRCkkgkHwardChs 20 
                 C  C+k  H  rdC +
  CCE29595.1 152 CYACGKLGHISRDCTA 167
                 999***********87 PP

  == domain 7  score: 4.8 bits;  conditional E-value: 0.0065
                 -TTT-SSBS-TTT-- CS
   zf-CCHC_5   5 CpRCkkgkHwardCh 19 
                 C  C+   H  rdC 
  CCE29595.1 180 CYGCGEAGHISRDCP 194
                 889***********6 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.5  17.2         5   1.8e+04       4      33 ..       6      36 ..       3      76 .. 0.78
   2 !    9.5   0.4   0.00026      0.93       4      22 ..      77      95 ..      74     106 .. 0.82
   3 !    6.8   3.9    0.0018       6.4       5      28 ..     130     153 ..     127     154 .. 0.85
   4 !    5.1   0.2    0.0062        22       6      22 ..     151     167 ..     147     173 .. 0.82
   5 !    9.1   0.3   0.00034       1.2       2      24 ..     175     197 ..     174     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: -5.5 bits;  conditional E-value: 5
   zf-CCHC_3  4 saaCQkClkkGHw..........tYECknagerkytkRps 33
                + aC kC+  GH+           Y Ck+         p+
  CCE29595.1  6 RRACYKCGNVGHYaevcsaterlCYNCKQ---------PG 36
                68999*******95555555555555554.........33 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00026
   zf-CCHC_3  4 saaCQkClkkGHwtYECkn 22
                + +C +C++ GH +  C+n
  CCE29595.1 77 GGRCYNCGQAGHIARACPN 95
                679**********999987 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0018
   zf-CCHC_3   5 aaCQkClkkGHwtYECknagerky 28 
                 a+C kC+++ H++  C++++ + y
  CCE29595.1 130 ATCYKCGGPNHFARDCQAQAMKCY 153
                 68***************8776655 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.0062
   zf-CCHC_3   6 aCQkClkkGHwtYECkn 22 
                  C  C+k GH +  C++
  CCE29595.1 151 KCYACGKLGHISRDCTA 167
                 5889********99996 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.00034
   zf-CCHC_3   2 nasaaCQkClkkGHwtYECknag 24 
                 +a+++C  C++ GH +  C++++
  CCE29595.1 175 TAGKTCYGCGEAGHISRDCPQKN 197
                 57899***************533 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.8    0.0042        15       1      14 [.       6      19 ..       6      22 .. 0.85
   2 ?    4.3   0.4      0.01        36       4      24 ..      29      47 ..      27      52 .. 0.81
   3 ?    3.2   0.9     0.022        79       4      21 ..      53      68 ..      51      76 .. 0.82
   4 ?    7.7   4.2   0.00088       3.1       3      21 ..      79      95 ..      78     107 .. 0.87
   5 ?   -3.0   2.1         2   7.1e+03       4      14 ..     132     142 ..     131     145 .. 0.74
   6 ?   10.0   1.4   0.00017       0.6       2      17 ..     150     165 ..     149     170 .. 0.84
   7 ?   14.1   0.5   8.5e-06      0.03       4      30 ..     180     204 ..     179     206 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0042
   zf-CCHC_6  1 rvKCknCGAFGHta 14
                r  C +CG  GH a
  CCE29595.1  6 RRACYKCGNVGHYA 19
                567*********87 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.01
   zf-CCHC_6  4 CknCGAFGHtarSkrCPmkcw 24
                C nC   GH      CP+ + 
  CCE29595.1 29 CYNCKQPGHES--NNCPLPRT 47
                99*******76..88*98665 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.022
   zf-CCHC_6  4 CknCGAFGHtarSkrCPm 21
                C  C  +GH      CP 
  CCE29595.1 53 CYHCQGLGHVQ--ADCPT 68
                99*******98..78886 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.00088
   zf-CCHC_6  3 KCknCGAFGHtarSkrCPm 21
                +C nCG  GH a  + CP 
  CCE29595.1 79 RCYNCGQAGHIA--RACPN 95
                8***********..89996 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 2
   zf-CCHC_6   4 CknCGAFGHta 14 
                 C +CG   H a
  CCE29595.1 132 CYKCGGPNHFA 142
                 999*9866655 PP

  == domain 6  score: 10.0 bits;  conditional E-value: 0.00017
   zf-CCHC_6   2 vKCknCGAFGHtarSk 17 
                 +KC +CG +GH  r  
  CCE29595.1 150 MKCYACGKLGHISRDC 165
                 7**********98755 PP

  == domain 7  score: 14.1 bits;  conditional E-value: 8.5e-06
   zf-CCHC_6   4 CknCGAFGHtarSkrCPmkcwngalvp 30 
                 C  CG  GH    + CP+k+  ga++p
  CCE29595.1 180 CYGCGEAGHIS--RDCPQKNVGGAVAP 204
                 899******86..9***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1812.44
//
Query:       CCE29596.1  [L=408]
Description: uncharacterized protein CPUR_03443 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.085   12.6   0.0    2.1  2  RVP_2            Retroviral aspartyl protease
       0.11   13.2   0.1         32    5.3   0.0    2.5  2  Methyltransf_25  Methyltransferase domain
       0.19   11.7   2.7       0.13   12.2   0.4    1.9  2  DUF2605          Protein of unknown function (DUF2605)


Domain annotation for each model (and alignments):
>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.4   8.6e+03      97     122 ..     166     190 ..     159     200 .. 0.69
   2 ?   12.6   0.0   1.4e-05     0.085      30      80 ..     241     295 ..     234     354 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.4
       RVP_2  97 lilLdlkdlDviLgmdWLsknkanid 122
                 ++ L+  +l+v Lg d Ls+    ++
  CCE29596.1 166 MLFLEALNLNV-LGADSLSQALERVE 190
                 56677777776.78888888766655 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.4e-05
       RVP_2  30 sipatvLfdsGasHsFiskafvsklklkveaLs....tpllietPvgssvtakei 80 
                   p++v+++ G   s +s+afv+k+k+++ +L     ++l +    g +v+++e+
  CCE29596.1 241 LKPGQVIIERGSEISIVSRAFVTKHKIPMYDLGsvgfKRLRMGNAAGRQVRVTEF 295
                 5799************************998852222356666666666665555 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0054        33      26      61 ..      83     119 ..      66     129 .. 0.76
   2 ?    5.3   0.0    0.0053        32      17      63 ..     170     215 ..     161     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0054
                      EEESSHHHH.HHHHHHHHHTTTTEEEEESBCCGBSSS CS
  Methyltransf_25  26 gvDiseeml.eaareraeeeglnvefvqgdaedlpfe 61 
                      +vD + + l +a rer+ ee++n+e++qg+aedl+  
       CCE29596.1  83 AVDQDLKELqQALRERYPEESPNAELRQGEAEDLSAY 119
                      566665444155789999999************9865 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0053
                      CTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTT CS
  Methyltransf_25  17 krlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedg 63 
                      ++l + +v+g D  +++le++++ a + ++++++vq   ++l  +++
       CCE29596.1 170 EAL-NLNVLGADSLSQALERVEQAATAMEFKANLVQSHNTNLLKQHQ 215
                      454.589******************9999999999988887654333 PP

>> DUF2605  Protein of unknown function (DUF2605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.75   4.5e+03      22      54 ..      64      96 ..      53      98 .. 0.74
   2 ?   12.2   0.4   2.2e-05      0.13      10      67 ..     150     207 ..     146     217 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.75
     DUF2605 22 fersrslLekeelsflseeeqadllarvkeaqq 54
                f  s+slL++ +++  ++e+  + l+++++a +
  CCE29596.1 64 FVDSSSLLRSITIRAWQNEAVDQDLKELQQALR 96
                666778888888888888777777777777766 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.2e-05
     DUF2605  10 iLepLLeDfqywfersrslLekeelsflseeeqadllarvkeaqqeveaakaLfkatd 67 
                 +L++L+  f++ ++    +Le  +l++l ++  ++ l+rv++a +++e    L++  +
  CCE29596.1 150 VLNSLISKFAHGLRDKMLFLEALNLNVLGADSLSQALERVEQAATAMEFKANLVQSHN 207
                 89*******************************************9999888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2988.55
//
Query:       CCE29597.1  [L=354]
Description: probable U5 snRNP-specific 40 kD protein (novel WD-40 repeat protein) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-39  130.9   7.1      5e-07   30.3   0.0    7.2  7  WD40           WD domain, G-beta repeat
    4.8e-13   49.2   0.3     0.0027   18.0   0.0    4.5  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    0.00088   18.3   0.1       0.56    9.1   0.0    3.2  3  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
     0.0078   15.0   2.2        1.9    7.1   0.1    3.4  3  Nucleoporin_N  Nup133 N terminal like
     0.0092   15.3   0.0       0.66    9.3   0.0    2.3  2  WD40_like      WD40-like domain
  ------ inclusion threshold ------
      0.048   13.2   1.6        5.1    6.6   0.5    2.4  2  PQQ_2          PQQ-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.7e-10     5e-07       3      37 ..      54      89 ..      52      90 .. 0.92
   2 !   16.9   0.1     3e-06    0.0089       7      38 .]     101     133 ..      95     133 .. 0.89
   3 !   21.7   0.1   8.6e-08   0.00026       4      38 .]     140     176 ..     137     176 .. 0.77
   4 !   15.5   0.0   8.3e-06     0.025      11      38 .]     190     217 ..     183     217 .. 0.91
   5 !   19.0   0.1   6.2e-07    0.0019       4      38 .]     224     259 ..     221     259 .. 0.87
   6 !   16.6   0.1   3.6e-06     0.011       6      38 .]     272     309 ..     267     309 .. 0.75
   7 !    8.2   0.0    0.0016       4.8       2      33 ..     314     347 ..     313     350 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.7e-10
                EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37
                ++ +l+GH + +   +f+p g+++asGs+D+++++W
  CCE29597.1 54 PVMELSGHtGEIFTAKFDPTGNLIASGSMDRSIMLW 89
                7889****777************************* PP

  == domain 2  score: 16.9 bits;  conditional E-value: 3e-06
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ltGH + + +l++s+d+  l ++s D ++  Wd
  CCE29597.1 101 LTGHkGAILDLQWSRDSEILYTASADMHLASWD 133
                 89**655****************99****9998 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 8.6e-08
                 EEEEESSSS.EEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtsla.fspdgawlasGsdDgtvriWd 38 
                 +r + GH   ++sl  + +  + l+sGsdDgt+ iWd
  CCE29597.1 140 IRRYVGHEEvINSLTvTRRGEDVLISGSDDGTISIWD 176
                 67899**555799975555555599***********9 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 8.3e-06
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++t++a s+ g+ ++sG+ D+ +r+Wd
  CCE29597.1 190 FPITAVAMSQAGNEVFSGGIDNDIRVWD 217
                 359************************9 PP

  == domain 5  score: 19.0 bits;  conditional E-value: 6.2e-07
                 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 +++l GHs+ + sl++spd++ l+s  +D +vr Wd
  CCE29597.1 224 VYSLLGHSDtIMSLKVSPDSQSLVSYAMDSSVRTWD 259
                 57788**556*************97677*******9 PP

  == domain 6  score: 16.6 bits;  conditional E-value: 3.6e-06
                 EEE.SSSS....EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tlt.GHss....vtslafspdgawlasGsdDgtvriWd 38 
                 t++ +H +      +++++ +g+ +a++s Dgtv +W+
  CCE29597.1 272 TFDgAHAGveknLMGVSWDAEGKKIAAASADGTVLVWS 309
                 555355553334569***********9999*******5 PP

  == domain 7  score: 8.2 bits;  conditional E-value: 0.0016
                 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSE CS
        WD40   2 qclrtltGH.ssvtslafspdgawla.sGsdDgt 33 
                 + l++l GH + v+s  fsp +  ++ s+s D+t
  CCE29597.1 314 KVLYKLPGHrGTVNSAEFSPGKEPILlSASSDRT 347
                 778999***988****999888875336655988 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     9e-07    0.0027       2      87 ..      69     153 ..      68     158 .. 0.85
   2 ?    4.6   0.0     0.014        40      49      79 ..     159     189 ..     145     199 .. 0.75
   3 !    5.3   0.0    0.0079        23      38      87 ..     189     237 ..     186     240 .. 0.87
   4 ?    2.1   0.0     0.083   2.5e+02      34      67 ..     227     260 ..     210     266 .. 0.71
   5 !   17.3   0.0   1.5e-06    0.0044      34      85 ..     277     327 ..     256     333 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 9e-07
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRlngq.rvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  ++ pt +LiA ++ d ++++ R+ g  + ++l  +++++ + +L+W+ d ++L  a +d ++   d  sg+ ++ +  ++e  +++l
   CCE29597.1  69 KFDPTGNLIASGSMDRSIMLWRTYGDcENYGL-LTGHKGAILDLQWSRDSEILYTASADMHLASWDLTSGTRIRRYVGHEE-VINSL 153
                  67899******************886244555.7899*********************************99998855554.46555 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.014
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvhslsvk 79 
                   + +L  + +dg++++ d  s++ v  ++++
   CCE29597.1 159 GEDVLISGSDDGTISIWDPRSKNAVDYIQTD 189
                  3569*****************9999888776 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0079
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  d  ++++a ++ g+    +  d+ +r+ d  ++ vv sl  +s+ ++++l
   CCE29597.1 189 DFPITAVAMSQAGNEVFSGGIDNDIRVWDLRKKAVVYSLLGHSD-TIMSL 237
                  667999999****************************9988887.47766 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.083
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrllda 67 
                    +++ ++ sL+ +pd + L+    d++vr  d+
   CCE29597.1 227 LLGHSDTIMSLKVSPDSQSLVSYAMDSSVRTWDI 260
                  3567788999999999999999999999887765 PP

  == domain 5  score: 17.3 bits;  conditional E-value: 1.5e-06
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  +++ +++  +++W  +gk +a a +dg+v + +  sgkv+ +l+ ++ + v+
   CCE29597.1 277 HAGVEKNLMGVSWDAEGKKIAAASADGTVLVWSNDSGKVLYKLPGHRGT-VN 327
                  5566778889********************************9988873.55 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00019      0.56     159     217 ..      33      92 ..       2     105 .. 0.81
   2 ?    2.4   0.0      0.02        60     180     219 ..     223     263 ..     204     281 .. 0.79
   3 ?    2.5   0.0     0.019        56     190     214 ..     284     308 ..     276     324 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00019
    Ge1_WD40 159 svdmiaskygsgelsveeieegllkieehs.liveaafspdGtalatasedGevkffqvy 217
                  +++ +s   ++++++++++  +++++ h+ +i +a f p G  +a  s+d  + +++ y
  CCE29597.1  33 RLNASSSALVQTNTRTSALQAPVMELSGHTgEIFTAKFDPTGNLIASGSMDRSIMLWRTY 92 
                 555666667778899999999********98***********************999988 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.02
    Ge1_WD40 180 gllkieehs.liveaafspdGtalatasedGevkffqvyle 219
                 ++  +  hs +i++  +spd  +l   ++d  v+ + +  +
  CCE29597.1 223 VVYSLLGHSdTIMSLKVSPDSQSLVSYAMDSSVRTWDIRPF 263
                 44556667769*************************99654 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.019
    Ge1_WD40 190 iveaafspdGtalatasedGevkff 214
                 ++  ++ ++G  +a+as+dG+v  +
  CCE29597.1 284 LMGVSWDAEGKKIAAASADGTVLVW 308
                 5666777888888888888888655 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.086   2.6e+02     116     157 ..      46      84 ..      34      90 .. 0.80
   2 !    7.1   0.1   0.00065       1.9     204     246 ..     108     151 ..     100     176 .. 0.61
   3 !    4.0   0.1    0.0056        17     200     231 ..     230     261 ..     222     271 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.086
                    ----EEEEEEEE--EETT.TTEEEEEEETTTC-EEEEETTSS CS
  Nucleoporin_N 116 lstnelslfntdlsvssdgeivtqvinseptgriflagstgr 157
                    + t+ l+    +ls++++ ei+t   + +ptg+ +++gs +r
     CCE29597.1  46 TRTSALQAPVMELSGHTG-EIFTA--KFDPTGNLIASGSMDR 84 
                    677888888899999987.99998..*************994 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00065
                    EEEEEEECCTCEEEEEETTSEEEEEEEETTCE..E-EEEEEEEHH CS
  Nucleoporin_N 204 ivqlridssrrilytlsskgvirvydlsasng..esslksdidir 246
                    i  l  +  ++ilyt+s+++ +  +dl+ s++   ++  ++  i+
     CCE29597.1 108 ILDLQWSRDSEILYTASADMHLASWDLT-SGTriRRYVGHEEVIN 151
                    55555666679*****************.4332333333333333 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0056
                    -GG-EEEEEEECCTCEEEEEETTSEEEEEEEE CS
  Nucleoporin_N 200 ereeivqlridssrrilytlsskgvirvydls 231
                     +++i++l++++ ++ l++   ++ +r++d+ 
     CCE29597.1 230 HSDTIMSLKVSPDSQSLVSYAMDSSVRTWDIR 261
                    689***************************97 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0098        29       2     107 ..      64     175 ..      63     188 .. 0.68
   2 !    9.3   0.0   0.00022      0.66       3      59 ..     192     248 ..     190     261 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0098
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvs.ivesfedSvifvklldddlil.vvtlDGtillsllenee....evenekieedistvkviddk 94 
                 ei++  +++ g+li+ G+ d  + +  +  +++ + ++++ +  ++  +   d  il  ++ D  +   +l+ +      v +e++ + +++ +  +d 
  CCE29597.1  64 EIFTAKFDPTGNLIASGSMDRSIMLWRTYGDCENYgLLTGHKGAILDLQWSRDSEILyTASADMHLASWDLTSGTrirrYVGHEEVINSLTVTRRGEDV 162
                 677778888888888888888888888777766543677888888877777776555256788888888888887333334445555555555566666 PP

   WD40_like  95 lliGtnkGsiyvf 107
                 l+ G++ G+i ++
  CCE29597.1 163 LISGSDDGTISIW 175
                 6667778887765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00022
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvv 59 
                 i ++ +s+ g+ +  Gg d+ ++v +l+ + +v+++ + +d ++  k+  d + lv 
  CCE29597.1 192 ITAVAMSQAGNEVFSGGIDNDIRVWDLRKKAVVYSLLGHSDTIMSLKVSPDSQSLVS 248
                 678999**************************************9999888877764 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.5    0.0017       5.1      91     234 ..      58     224 ..      13     227 .. 0.64
   2 ?    5.6   0.0    0.0034        10      26      62 ..     284     319 ..     243     348 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0017
       PQQ_2  91 ldaedGkr......................lWstqqrseepaelrssaspava.......gdtvvvgessgklvaldpkdGkvlWerelaaprgtsels 160
                 l+ ++G+                       lW+t+ +  e+  l++  + a+        ++ ++ + ++  l+  d+++G ++  + ++  +      
  CCE29597.1  58 LSGHTGEIftakfdptgnliasgsmdrsimLWRTYGDC-ENYGLLTGHKGAILdlqwsrdSEILYTASADMHLASWDLTSGTRIRRY-VGHEE------ 148
                 33344444444444444445555555555688888888.666644444444444888888888888888999999999999886666.33333...... PP

       PQQ_2 161 rvgdisgrpvvaegtVyassgqgrllal.dlatgrrl.w.ske.issinglpildgdllyvvs.agelialdratGavl 234
                   + +s +++  +++V++s+ + +++++ d ++++ + + +++ + + ++   ++g+ ++ +  ++ +  +d+  +av+
  CCE29597.1 149 --VINSLTVTRRGEDVLISGSDDGTISIwDPRSKNAVdYiQTDfPITAVA-MSQAGNEVFSGGiDNDIRVWDLRKKAVV 224
                 ..223345555555999999988888888999999666777777888888.8888998887775588888888877765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0034
       PQQ_2  26 gggvsravlsggtlfvatgggrlvaldaatGkvlWet 62 
                   gvs+   +g+++++a+  g++  ++  +Gkvl + 
  CCE29597.1 284 LMGVSWDA-EGKKIAAASADGTVLVWSNDSGKVLYKL 319
                 56888999.9999999999999999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2447.09
//
Query:       CCE29598.1  [L=192]
Description: probable BET3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-34  119.0   0.1    1.6e-34  118.7   0.1    1.1  1  TRAPP     Transport protein particle (TRAPP) component
     0.0091   14.9   0.0       0.01   14.7   0.0    1.1  1  PNGaseA   Peptide N-acetyl-beta-D-glucosaminyl asparaginase a
  ------ inclusion threshold ------
      0.048   13.6   0.1      0.097   12.6   0.1    1.5  1  DUF4250   Domain of unknown function (DUF4250)


Domain annotation for each model (and alignments):
>> TRAPP  Transport protein particle (TRAPP) component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   0.1   2.7e-38   1.6e-34       2     145 ..      27     177 ..      26     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 2.7e-38
       TRAPP   2 afllgelvsylqrds.kdveevekrLekmGyrvGlrllelllarer..pretdilevlkfickdlWkllfgkqidnlktnhrge...yvltdnefpltr 94 
                 ++++g +v++l++d  +d++ev+k+L+kmGy++Glrl+e++la+++  +r  +++e++++i++ ++k++++++++++++ ++++   + +++n  p+++
  CCE29598.1  27 TLTYGTVVAQLCKDFdNDYAEVNKQLDKMGYNIGLRLIEDYLAKSNtmKRCANFRETADMISRIGFKIFLNITPQVTNWTSDNKqfsLLFDEN--PFAD 123
                 789***********9568**************************6645799*****************************8888877777888..**** PP

       TRAPP  95 fvelpke..ls....ylaflcGiirGaLenlgfpakVtahelpsdelrgrttfeikv 145
                 fvelp++  ++    y+++lcG++rGaLe+++++  V+ah + sd+lrg+ t+e++v
  CCE29598.1 124 FVELPDDgrAQnelwYSNILCGVLRGALEMVQMQ--VEAHFI-SDVLRGNDTTEMRV 177
                 *****9998446899*******************..***777.66********9997 PP

>> PNGaseA  Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.7e-06      0.01     133     201 ..      76     144 ..      38     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-06
     PNGaseA 133 elletaeaadlilpisarksasnsssafslpsdkatvtlslprntsravlsisasgqaaeEfWysNvls 201
                 +  + +e+ad+i  i  +   + ++++ +  sd+ + +l +++n    ++++   g+a++E WysN+l 
  CCE29598.1  76 RCANFRETADMISRIGFKIFLNITPQVTNWTSDNKQFSLLFDENPFADFVELPDDGRAQNELWYSNILC 144
                 55677899********9999999999999**************************************96 PP

>> DUF4250  Domain of unknown function (DUF4250)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.6e-05     0.097      24      47 ..      35      58 ..      28      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
     DUF4250 24 delcedldidkeeleekLasigYe 47
                 +lc+d+d d +e+ ++L+++gY+
  CCE29598.1 35 AQLCKDFDNDYAEVNKQLDKMGYN 58
                79*********************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1557.67
//
Query:       CCE29599.1  [L=860]
Description: related to Som1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1418  (0.0790897); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:00.44
# Mc/sec: 5893.13
//
Query:       CCE29600.1  [L=55]
Description: uncharacterized protein CPUR_03447 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   14.7   0.7      0.026   14.7   0.7    1.0  1  CAF20     Cap associated factor


Domain annotation for each model (and alignments):
>> CAF20  Cap associated factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.7   1.4e-06     0.026      61      96 ..      10      46 ..       3      54 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-06
       CAF20 61 nrRRsSrsaa..kkPklkkkkavkvDedGwstlekkkk 96
                +r R S+ ++   +  ++ k   k+D+dGw  + ++++
  CCE29600.1 10 QRPRGSHMKSanGRAMIRSK-LRKTDSDGWHRVVTNTS 46
                68899998665699999999.79*******98776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 446.41
//
Query:       CCE29601.1  [L=260]
Description: uncharacterized protein CPUR_03448 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-59  200.2   0.0    2.4e-59  199.9   0.0    1.1  1  TFB6      Subunit 11 of the general transcription factor TFII


Domain annotation for each model (and alignments):
>> TFB6  Subunit 11 of the general transcription factor TFIIH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.9   0.0   1.4e-63   2.4e-59       2     171 .]      76     239 ..      75     239 .. 0.90

  Alignments for each domain:
  == domain 1  score: 199.9 bits;  conditional E-value: 1.4e-63
        TFB6   2 YeslkellkdldklvdvlWvSgtpslqipyLlniaselldylekfppspratfklLrkLDkiFasLlaGeDvetgetlpGfeeglragmstTdkVRlks 100
                 ++s+ e++  l++++d+lW Sgtpslqip+Ll+ia++++ y+++fppsp atf+lLrkLD++FasLl+G D++t+e lpGfe+gl+ag++tTd+VR+ s
  CCE29601.1  76 FKSMAEVCMALESIIDILWKSGTPSLQIPFLLRIATDFTIYVSSFPPSPGATFDLLRKLDHCFASLLCGMDIDTKEALPGFENGLNAGLTTTDMVRCMS 174
                 89************************************************************************************************* PP

        TFB6 101 ivertRvlvvevlereeeeeeeeedeeededeeeeeeeeeeeeeeedeededeelemevarvYektleklG 171
                 +vertRvl+v + ++ eeee+      ++ed + +ee + + + e++ + e+e+l+m+var+Ye t++ lG
  CCE29601.1 175 LVERTRVLMVVMEDNYEEEEK------SEEDYNLDEEGSADAAGESAANAEEEKLHMDVARIYEFTIVGLG 239
                 *********977666644444......445555555555556677788889*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2239.05
//
Query:       CCE29602.1  [L=71]
Description: uncharacterized protein CPUR_03449 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.094   12.6   0.0        0.1   12.5   0.0    1.1  1  MerE      MerE protein


Domain annotation for each model (and alignments):
>> MerE  MerE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.8e-06       0.1       4      53 ..       3      53 ..       1      58 [. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.8e-06
        MerE  4 perlPaet.rkpltGylwGalavltcPchlpilaivlaGttaGaflgeywv 53
                p+r+  e  r++ +Gyl  +   lt P   +++  + a  +a +fl+  w+
  CCE29602.1  3 PKRIHGEKsRRAPKGYLASTYDTLTSPDNSAVVLSIAAFGAAVTFLASSWG 53
                56766665156789***************999999999999******9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 536.87
//
Query:       CCE29603.1  [L=633]
Description: uncharacterized protein CPUR_03450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4886.89
//
Query:       CCE29604.1  [L=459]
Description: probable pheromone receptor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-85  284.6  12.7    9.5e-85  284.3  12.7    1.1  1  STE2       Fungal pheromone mating factor STE2 GPCR
  ------ inclusion threshold ------
       0.46    9.6   9.7       0.62    9.2   9.7    1.1  1  SOG2       RAM signalling pathway protein
        1.7    8.6   9.3        2.9    7.8   4.8    2.3  2  Serglycin  Serglycin


Domain annotation for each model (and alignments):
>> STE2  Fungal pheromone mating factor STE2 GPCR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.3  12.7   1.6e-88   9.5e-85       5     280 .]       9     288 ..       6     288 .. 0.99

  Alignments for each domain:
  == domain 1  score: 284.3 bits;  conditional E-value: 1.6e-88
                 XXXXXXXXXX-----S-THHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHT--S.---HHHHHHHHHHHHHHHHHHHHHHHHHHH-S--XXXXXXX CS
        STE2   5 nqtitltspdgtevevsfaeldefvkesiktaivyGvqiGaclvlllvlllltskekrkspifilnvlaLllniirslllllyltsplsslyvlftgdy 103
                 +q+itl+sp+g ++ ++++++d+f++esi+++++yG+q+Gac++lllv+ll+t+++k  +p+ +l++++L ++++r++++ +++ spl+++y +++gdy
  CCE29604.1   9 DQSITLLSPNG-PIVIPIPSIDAFNDESISVTLNYGFQLGACFLLLLVTLLVTKPHKILRPSSLLHLAGLSACLLRTAINQAFFHSPLNHFYPFWSGDY 106
                 89********9.789************************************************************************************ PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX CS
        STE2 104 srvsrsdlavsvaanvlsvllvalieasLvlQvrvvfstlpkllrvvltalsallalvtvgfrlalavlniraileaeetsssswleslslilfavsIn 202
                 ++v+ s++++sva+++ s+llv++ ea+L++Q+++++s++p  ++++l++lsal++l+tvg+r+a+av++++a++  +++++  w+ + +l+l+++sI+
  CCE29604.1 107 TSVPLSYMRTSVAGTCASLLLVMILEAALMHQAWTMVSLWPPSVKIPLVTLSALVSLLTVGWRFAFAVIQSNAVMGLAPARNLAWVVNGALVLNCLSIC 205
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXHHHHHHHHHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        STE2 203 ffslifvvKLvlairtrrklg.....lkqfgpmqvllimscqtliiPsifaileyavksndelasltltlVvlsLPLsslwAs 280
                 +++++f+vKL l+++ +r ++      k ++pm++l++++++++i+P+ifa le+a++ n+e+aslt t+V+l+LPL++l+A+
  CCE29604.1 206 WYCALFNVKLALHLFVNRGILrsgsvGKALTPMEILVMTNGVLMIVPVIFAGLEWAHFPNFESASLTHTSVALILPLGTLVAQ 288
                 *********************998877******************************************************96 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   9.7    0.0001      0.62     234     355 ..     268     396 ..     252     424 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0001
        SOG2 234 sdqipfnl...........srsrrssssgnsaspaangaqsetsersasssg.vqssasstPlgegstsppgalsrqslsttgststltsssksrsssr 320
                 s ++++ +           +++ +++s +n+ ++++n + ++t++ s+s+s   ++       +++++++p+++ ++s+st+++ ++ ++  +s s s 
  CCE29604.1 268 SASLTHTSvalilplgtlvAQQVSQASGNNNNNNNNNLSYLSTTNPSHSHSHsHHTR-----ASNTTREKPHHDLSHSMSTPSHIASISTTCRSGSGSG 361
                 443333334556666667666677777778888888888777777777764422222.....3333444446777888899999999999999988666 PP

        SOG2 321 sntnasastprslattpappasaesfastlt.asri 355
                 s + + +   +s++  ++ p+s++++ s+++   r+
  CCE29604.1 362 SGSGSPTRLLSSSSLFKRGPNSTNTM-SKSMsMDRS 396
                 66544444455555556656666663.333323333 PP

>> Serglycin  Serglycin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.8   0.00049       2.9      86     107 ..     349     367 ..     318     378 .. 0.58
   2 ?    2.8   0.2     0.018     1e+02      87     113 ..     391     418 ..     369     431 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00049
   Serglycin  86 plsedysgsgsGsGsGsGsgsg 107
                 ++s       sGsGsGsGsgs 
  CCE29604.1 349 SISTTC-R--SGSGSGSGSGSP 367
                 333333.3..444444444443 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.018
   Serglycin  87 lsedy.sgsgsGsGsGsGsgsgsgflte 113
                 +s d  s+s  G+G+G G+   ++f  e
  CCE29604.1 391 MSMDRsSDSCKGAGAGVGAHRLDHFDLE 418
                 3333357888899999988877777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3244.75
//
Query:       CCE29605.1  [L=503]
Description: related to component of actin cortical patches LAS17 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-38  131.9   0.2    1.8e-38  131.1   0.2    1.4  1  UEV            UEV domain
    2.3e-21   75.5   0.4    7.9e-21   73.8   0.0    2.0  2  Vps23_core     Vps23 core domain
  ------ inclusion threshold ------
      0.051   13.2   0.8       0.15   11.7   0.1    2.0  2  UQ_con         Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.1   0.2     3e-42   1.8e-38       1     121 []      25     147 ..      25     147 .. 0.99

  Alignments for each domain:
  == domain 1  score: 131.1 bits;  conditional E-value: 3e-42
                 HHHHHHHHHHH-TTEEEEEEEEE-TTS-EEEEEEEEEEEE-SSSTTS-EEEEEEE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHHS--T CS
         UEV   1 vvkdvvkvlqkfknlkprtevytfedgesklllnlkGtipvkykgatyniPiliwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLeeWkr 99 
                 +++dv ++l++ ++l+prt+v+tf +g+s+lll+l+Gtipv+++g+ty +Pi iwv+++yP+e+P+vyv+pt++m+++++++vd qGlvy+pyL  W +
  CCE29605.1  25 TYHDVAQALASTPTLSPRTDVHTFPNGSSALLLHLSGTIPVNFRGNTYRFPISIWVPHTYPREPPLVYVTPTETMMVRPGQHVDPQGLVYHPYLVGWAQ 123
                 689***********************************************************************************************9 PP

                 ..TT--HHHHHHHHHH-----XXX CS
         UEV 100 ..eksnlvslvqelaqafeeesPl 121
                    +snl + +  l++ f++e+P+
  CCE29605.1 124 fwDRSNLHEFITILSDIFAKEPPV 147
                 99*********************7 PP

>> Vps23_core  Vps23 core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.48   2.9e+03      46      59 ..     345     358 ..     345     361 .. 0.86
   2 !   73.8   0.0   1.3e-24   7.9e-21       1      64 []     431     494 ..     431     494 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.48
  Vps23_core  46 KqvReLareqFlkr 59 
                 K  R+La+  F +r
  CCE29605.1 345 KLLRQLAQTLFTVR 358
                 567********988 PP

  == domain 2  score: 73.8 bits;  conditional E-value: 1.3e-24
  Vps23_core   1 elvvaetplsnqllelvaedkAieDtiylLdkaldrgkidldtflKqvReLareqFlkralikK 64 
                 el+va+t++ nql++lvae++A+ D+i  L++a++rg+i+  +f K++R+L+re++lk+al++K
  CCE29605.1 431 ELLVAPTVVANQLYTLVAEERALGDVIFILGRAVERGRISPAVFAKTTRSLGREWYLKKALVRK 494
                 689***********************************************************98 PP

>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.6e-05      0.15      42      97 ..      67     127 ..      28     159 .. 0.68
   2 ?   -1.3   0.0      0.25   1.5e+03      32      45 ..     245     258 ..     220     262 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.6e-05
                 TTTEE..EEEEEE--TTTTTS--EEEESS...T-SCT..TBETTSBB-CGGGSTTT--TTSHH CS
      UQ_con  42 Yeggv..FklelefpedYPlkpPkvkfvt...kifHP..nvdksGevcldiLkeekWspaltl 97 
                 + g++  F +++ +p++YP +pP v  +     ++ P  +vd++G v+   L    W   ++ 
  CCE29605.1  67 FRGNTyrFPISIWVPHTYPREPPLVYVTPtetMMVRPgqHVDPQGLVYHPYLV--GWAQFWDR 127
                 55555005567778***********9985555566665578888888888887..35555544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.25
                 EEEEB.TTSTTTTE CS
      UQ_con  32 vlikgpedtpYegg 45 
                 ++  gp++tpY+++
  CCE29605.1 245 GVTSGPQGTPYQEA 258
                 56789999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1237  (0.0689944); expected 358.6 (0.02)
Passed bias filter:                      744  (0.041497); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 3449.22
//
Query:       CCE29606.1  [L=484]
Description: related to tryptophan 2,3 dioxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-163  544.8   0.0   1.5e-163  544.6   0.0    1.0  1  IDO       Indoleamine 2,3-dioxygenase


Domain annotation for each model (and alignments):
>> IDO  Indoleamine 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  544.6   0.0  8.4e-168  1.5e-163       2     433 ..       8     426 ..       7     427 .. 0.94

  Alignments for each domain:
  == domain 1  score: 544.6 bits;  conditional E-value: 8.4e-168
                 HGSST-BTTTBTS.-SS--SS--G.GGHHHHHHHHTHHHHHHTTHHHHHHHTS----STT--SHHHHHHHHHHHHHHHHHHHHTTSS---SEE-HHHHH CS
         IDO   2 ledfdvsektGFlpeeaPlerLpdeyyepWeellenlrelieserlRekvrklpvlstdeLkseeelrrAhlvLaflahaYvwsegkkpsevlPasiav 100
                 l+d+++s+++GFlpe+ Pl+rLpd+yy++We+++ nl++l++++rlR  v++lpvlst  L++e+e+rrA+++L+f+ahaY+w+ g+ p+++lP +i+v
  CCE29606.1   8 LADYGLSSRHGFLPETFPLARLPDPYYNKWEAIATNLQALVLTRRLRGLVDQLPVLSTIGLEHESEWRRAYSLLCFIAHAYIWG-GDLPADRLPMPISV 105
                 689*********************************************************************************.99************ PP

                 HHHHHHHHHTS-SS--HHHHTTSSEEESSTTS-.SSG...GGEEES--SSTTSSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-HHHHHHHHHHHH CS
         IDO 101 PllevsekLelpPvltYadlvLwNfkkldeeeelsklleldnlrilttftgtedeewFylvsvaiEargaealklmlsaldeareadearvtsaLerla 199
                 Plle++++Le+ Pv+tYa+++LwNfk+++ +e   ++++++n+++l tftg+ de+wFyl+svaiEarga++l+lml+a+++ar++d+++vt++L  +a
  CCE29606.1 106 PLLEIADHLEVLPVATYAAVCLWNFKPVFVDE---HVDNMENIATLITFTGSIDESWFYLISVAIEARGAPILDLMLTAIAAARSNDTKTVTRCLVGFA 201
                 ******************************98...79999*********************************************************** PP

                 HHHHHHHHHHTTHHHHS-HHHHHHTHHHHH--SSSBGG..GTT-BEET.TTE...SSEB-B---GGGG-HHHHHHHHHTT--TT............... CS
         IDO 200 evideltklLervrekcdpevFYhkiRpflaGskndaeaglpegvlye.gveegkeevrqlsGgSagQSsliqalDvfLgvehertgekaaeakk.e.. 294
                 e++++lt++L+r++e+cdp++FYh+iRpflaGskn+aeaglp+gv+ye g  +g+ee+rq+sGgS++QSsliq++D++Lg++h++tge+++ +++ e  
  CCE29606.1 202 ERLTDLTNILQRMHESCDPTIFYHRIRPFLAGSKNMAEAGLPHGVMYEdG--SGQEEYRQYSGGSNAQSSLIQFFDIVLGIHHRPTGESRDPSSEsEle 298
                 ************************************************56..899*****************************999999888885564 PP

                 .S.SSHHHHHHHHHGGGS-HHHHHHHHHHHTS--HHHHHHHTT-HH...HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH................. CS
         IDO 295 sekkkaeesFleemrkYmPgphrrFLehlesaasirelvlsaeseeeeelreaYnaaveaLkelRdkHikivtlYivlparkakkeeskklaakaekea 393
                 ++++  +++F++emr+YmPgph rFL +++++a+ir++v ++++e+  +l+ aY+a++++L+++RdkHi+iv++Yi++p+r+ +++++++         
  CCE29606.1 299 ARHSPPRHNFIQEMRRYMPGPHARFLADVTQVANIRDYVEANRTER--ALCLAYDACLAMLSAFRDKHISIVARYIITPSREVRARSRSQ--------- 386
                 3344789********************************6666655..9*********************************76664443......... PP

                 ...S---------------BTTTHHHHHHHHHHHHHHHHT CS
         IDO 394 eaeekkelekkeeseekelkGTGGtdLvpfLkqvRdeTke 433
                 +++  +  +++++s++k+ +GTGGt+L+pfLkq+RdeT e
  CCE29606.1 387 HKRPVNLAAASHNSKAKSHTGTGGTALIPFLKQARDETGE 426
                 22233344567789999*********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3552.88
//
Query:       CCE29607.1  [L=1261]
Description: probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.1e-125  418.9   0.2   3.5e-125  418.1   0.2    1.4  1  RNA_pol_Rpb2_6   RNA polymerase Rpb2, domain 6
    7.6e-52  175.8   0.0    1.8e-51  174.6   0.0    1.6  1  RNA_pol_Rpb2_1   RNA polymerase beta subunit
    1.4e-45  155.3   0.0    2.6e-45  154.4   0.0    1.5  1  RNA_pol_Rpb2_2   RNA polymerase Rpb2, domain 2
    1.8e-33  114.8   0.1    4.1e-33  113.6   0.1    1.7  1  RNA_pol_Rpb2_7   RNA polymerase Rpb2, domain 7
    1.8e-25   88.9   0.1    4.9e-25   87.5   0.1    1.8  1  RNA_pol_Rpb2_3   RNA polymerase Rpb2, domain 3
    2.9e-23   82.2   0.1      8e-23   80.8   0.1    1.9  1  RNA_pol_Rpb2_5   RNA polymerase Rpb2, domain 5
    3.7e-20   72.0   0.3      1e-19   70.5   0.1    2.0  2  RNA_pol_Rpb2_4   RNA polymerase Rpb2, domain 4
  ------ inclusion threshold ------
       0.34   11.2   1.5         16    5.8   0.1    3.3  3  RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domai


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.1   0.2  1.5e-128  3.5e-125       1     390 []     787    1159 ..     787    1159 .. 0.94

  Alignments for each domain:
  == domain 1  score: 418.1 bits;  conditional E-value: 1.5e-128
                      HHHT-SS-TTB-HHHHHHHHHHGGGB-S---TTTTT---SSEEEESS----SSB-S.TTTTTS........GGGS-SEEEEEBBBS--TTTTT CS
  RNA_pol_Rpb2_6    1 vaklapvvehvqspriiiqaamekqalgiyslnkfkrsnqktyllcinqkPlvktgdkveagqvldgpatekgelalGqnavVAvmsyeGYni 93  
                      +a+++p+++h+qspr+++q+am+kqa+g+  +n+ +r+++  ++l+++qkPl +t+ ++e+++        + el++Gqna+VA+++y+GYn+
      CCE29607.1  787 CASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTR-SMEFLK--------FRELPAGQNAIVAIACYSGYNQ 870 
                      6999****************************************************.******........********************** PP

                      TT-EEEBCHHHHTTTT-EEEEEE..EEE--SSSS---.-S--..-.....-SS-GGGS-TTSB--SS-EEETT-EEE---..B-----...-- CS
  RNA_pol_Rpb2_6   94 EDaiilnerlvdrdvftsihikeyeveardtklgeeeitrdipnv.....seealkkLdedGivrvgaevkegdilvgkvtkgeteltpeekl 181 
                      ED++i+n++++dr++f+s+++++y+ + ++  l+ +e+++++ ++     ++  ++kLdedGiv +g +v+ +di++gk+      + +e++ 
      CCE29607.1  871 EDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPFHQstlrmKHGTYDKLDEDGIVAPGVRVSGEDIIIGKT----APIDQENQD 959 
                      ***********************777777777777888988877789999999**************************8....334445555 PP

                      ---------..-B---EE--TT-EEEEEEEEE.......EE-TT--EEEEEEEEEEE---TT-BEEETTS---BBEEEB-TTTSEEETTS--- CS
  RNA_pol_Rpb2_6  182 lraifgekarevkdtslrvksgeegvVdkvkvfsrekgdelkagvnklvkvyvaqkRklqvGDKfasrhGqKGvvslilpqeDmPfledGivv 274 
                      l + ++ ++   +d s+ ++s+e+g++d+v++       + +a+  k+vkv+v++++ +q+GDKfasrhGqKG+++++++qeDmPf+++G+++
      CCE29607.1  960 LGTRTSVHQ--RRDISTPLRSTENGIIDSVIL-------TVNADNVKYVKVRVRTTKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTP 1043
                      555554444..699999***************.......89999************************************************* PP

                      SEEE-GGGCHHH-BTTHHHHHHHHHCCCSSSS--B--TT-...-HHHHHHHHHTTS-TT-EE-EEETTTS-B-SS-EEB-EEEEEEBS--CCC CS
  RNA_pol_Rpb2_6  275 DivlNPlgvPSRmtigqllEtllgkaaalegkkvdatvFdgakeeeikelLeeagleasGkevlydGrtGekleaeifvGviYylkLkhlved 367 
                      Di++NP+++PSRmti++l+E+ll+k++ leg + dat+F+  + + ++elL+++g++++G e++y+G tG+kl+a++f+G++Yy++L+h+v+d
      CCE29607.1 1044 DIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDD 1136
                      ****************************************9999************************************************* PP

                      S----SS--B-TTT--B-SCGGG CS
  RNA_pol_Rpb2_6  368 KihaRstGpyslltqQPlgGkaq 390 
                      KihaR++Gp++ +t+QP++G+a+
      CCE29607.1 1137 KIHARARGPVQIMTRQPVEGRAR 1159
                      *********************96 PP

>> RNA_pol_Rpb2_1  RNA polymerase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   0.0   7.9e-55   1.8e-51       1     200 [.      37     479 ..      37     482 .. 0.96

  Alignments for each domain:
  == domain 1  score: 174.6 bits;  conditional E-value: 7.9e-55
                     CTTHHHHHHHHHHHHTHHHHHCTTSSECCHCSSSHC..SSSC.....EEEEEEEEEEESCSSECTTSCEEES.HHHHHHCTSBXEEEEEEEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1   1 gLvsqqldSFnkfveqdlekiikeeaaieseeeiqs..sgee.....lelkfvsirlgkPvvdesdasereiyPkearlrnltYsaplyvklklv 88 
                     gLvsqq dSF++f ++++++ ++e ++i++++++    +g++     +e+kf+ + +++P+++e+d++ ++++P e+r rnltY +ply++++++
      CCE29607.1  37 GLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPsaPGTKialrrYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKK 131
                     69****************************998643114444999*************************************************9 PP

                     ECCCC........................................TCCEEEEEEEEEEEEEXBTTSTTSSSTTS.HHHHHHTTS.TTS..SSEEE CS
                     xxxxx........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1  89 vyekd........................................nkeeikeeevyiGelPlMlrskacvlseaseeelvelkEcpldqGGyFii 143
                     v  +                                          k+e  ++ v++G+lP+M++sk c+ls  ++e l  ++Ecp+dqGGyF+i
      CCE29607.1 132 VSAAIerevplhemddaqqteyaktgenptklvweeeetpeddqaGKSEDWKNMVFVGKLPIMVKSKICHLSRETDESLFTVNECPYDQGGYFVI 226
                     97665899*********************************9998777778899***************************************** PP

                     TTCEEEEXEEEE................................................................................... CS
                     xxxxxxxxxxxx................................................................................... RF
  RNA_pol_Rpb2_1 144 nGtekvivaqek................................................................................... 155
                     nG+ekv++aqe+                                                                                   
      CCE29607.1 227 NGSEKVLIAQERsaanivqvfkkaqpspytytaeirsalekgsrlisslqlklygkgdsarggfgqtihttlpfvksdlpiaivfralgvvsded 321
                     *********************************************************************************************** PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      CCE29607.1 322 ilnhicydrndsqmlemlrpcieeafcvqdrevaldfigkrgnrdqaglgrekrvrvakdilqketlphisqsegsetrkafflgymvhkllqca 416
                     *********************************************************************************************** PP

                     ..................XHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSSSHHHHSCSHH CS
                     ..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 156 ..................laGeLlaslfrvllkklerdvkerlqksleklddlmlqllvnakp 200
                                       laG+Lla+lfr  ++++++++ ++l++++e +++++l++ ++  +
      CCE29607.1 417 lgrreaddrdhfgkkrldLAGPLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFNLAVGIKPGT 479
                     ******************************************************999888665 PP

>> RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.0   1.1e-48   2.6e-45       3     190 .]     242     434 ..     240     434 .. 0.82

  Alignments for each domain:
  == domain 1  score: 154.4 bits;  conditional E-value: 1.1e-48
                     SCEEEEE-SSSSSE..............SSSCCEECCCEEEEECCCCSTSCEEEEECTTSSSEEEHHHHHHHTT--STTHHHHHHTSSSTTHHHH CS
  RNA_pol_Rpb2_2   3 ngiyvekekdknki..............satvtsslisqrgsvlklekdgktliwtriskkrkipivivlkAlglvsdreIlericydsedsqll 83 
                     n+++v+k+++++ +              + +++  l  ++++ +     g+t+  t++ +k++ pi+iv++Alg+vsd++Il++icyd +dsq+l
      CCE29607.1 242 NIVQVFKKAQPSPYtytaeirsalekgsRLISSLQLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSDEDILNHICYDRNDSQML 336
                     6777777777777777777777774442222222233333333444446789999**************************************** PP

                     HHHHHHHHHHCTSSSCHHHHHHHHH...CSSTTSSSCCCCCHHHHHHHCHHHHHHHTTTTSSTTTTTSSSTCHH..HHHHHHHHHHHHHHHHTTS CS
  RNA_pol_Rpb2_2  84 eelleeleekeeiqtqeealdyigk...vvalrrgeearlqsareilqkrydlgeigreklnkhlglseslenkrlkaqdilymidrLlslklgr 175
                     e+l+++ ee++ +q++e+ald+igk   + +++ g+e+r+++a++il         ++e+l+ h+ +se  e++  ka++++ym+++Ll+++lgr
      CCE29607.1 337 EMLRPCIEEAFCVQDREVALDFIGKrgnRDQAGLGREKRVRVAKDIL---------QKETLP-HISQSEGSETR--KAFFLGYMVHKLLQCALGR 419
                     ************************97666667777777777777776.........7*****.*******9999..******************* PP

                     SSS--TTSGGGEEEE CS
  RNA_pol_Rpb2_2 176 revDDiDhlgnkRvr 190
                     re DD+Dh+g+kR++
      CCE29607.1 420 READDRDHFGKKRLD 434
                     *************96 PP

>> RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.1   1.8e-36   4.1e-33       1      86 [.    1161    1253 ..    1161    1254 .. 0.97

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 1.8e-36
                      BBEEEEHHHHHHHHHHTBHHHHHHHHTTTTTEEEEEEESSSSSCCCEE.......EBTTTTCSSSEEEEEEEHHHHHHHHHHHHTTBEEEEES CS
  RNA_pol_Rpb2_7    1 GGlrfGEMErdaliayGaaalLkerltikSDavevdvcgrckllaaan.......eCkivkseekiekveipeafklLlqeLqslgialklll 86  
                      GGlrfGEMErd++ia+Gaaa+L+erl++ SDa++v+vc+ c+l++ ++       eC+ +k+++ki++++ip+a+klL+qeLqs++ia ++++
      CCE29607.1 1161 GGLRFGEMERDCMIAHGAAAFLRERLFEVSDAFRVHVCEICGLMTPIAnlskqsfECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1253
                      9******************************************99877899*************************************99976 PP

>> RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.1   2.2e-28   4.9e-25       1      68 []     508     572 ..     508     572 .. 0.99

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 2.2e-28
  RNA_pol_Rpb2_3   1 qvldrlnplselshlrrvsslrgglskerkttevRdlhpshwGriCpveTPEGencGlvksLallarv 68 
                     qvl+r+++ s+lshlrr +++   + ++ k +++R+lh++hwG +Cp+eTPEG+ cGlvk+L+l+++v
      CCE29607.1 508 QVLNRYTFASTLSHLRRTNTP---IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYV 572
                     89*******************...******************************************97 PP

>> RNA_pol_Rpb2_5  RNA polymerase Rpb2, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.1   3.6e-26     8e-23       1      58 []     709     780 ..     709     780 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 3.6e-26
                     HHHHHHTTSEEEEEHHHHTT--EESSTTTCSST-SSTTTSS-..............-TTSSSST-SEEES-G CS
  RNA_pol_Rpb2_5   1 wddLlregvvEylDaeEEetamIamtpedleksreekealee..............kenskshtyTHcEIhP 58 
                     w++L+r g vEylDaeEEet+mI+mtpedle  r +k++ +               ++n+++h+yTHcEIhP
      CCE29607.1 709 WEGLIRAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGVALdddlgddpnrrlktRTNPTTHMYTHCEIHP 780
                     9*******************************999998877799***************************9 PP

>> RNA_pol_Rpb2_4  RNA polymerase Rpb2, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         8   1.8e+04      15      28 ..     513     526 ..     510     529 .. 0.82
   2 !   70.5   0.1   4.6e-23     1e-19       1      62 []     607     668 ..     607     668 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 8
                     CCHHHHHHHHCCTT CS
  RNA_pol_Rpb2_4  15 kklvetlRelRRkg 28 
                       +++tl +lRR++
      CCE29607.1 513 YTFASTLSHLRRTN 526
                     57899999****86 PP

  == domain 2  score: 70.5 bits;  conditional E-value: 4.6e-23
                     EECTT-BEEE-S-HCCHHHHHHHHCCTTSS-TT-EEEE-TTT--EEEE-SSEEB-EEEEE-S CS
  RNA_pol_Rpb2_4   1 VfvNGrllGvtrdpkklvetlRelRRkgkiseevsivlnekqkevkiatDgGRvcRPliiVe 62 
                     +fvNG+++Gv++dpk+lv+++ e RRk +++ evs v++++++e ki++D+GRv+RP++ V+
      CCE29607.1 607 IFVNGTWVGVHQDPKHLVSQVLETRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQ 668
                     7**********************************************************995 PP

>> RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0073        16      11      27 ..     717     733 ..     710     751 .. 0.86
   2 ?   -0.3   0.1      0.57   1.3e+03      30      64 ..     951    1001 ..     943    1001 .. 0.60
   3 ?    1.6   0.0      0.15   3.4e+02      37      59 ..    1132    1154 ..    1126    1155 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0073
                      EEEEEEHHHHTTSEEE- CS
  RNA_pol_Rpb2_45  11 evvYLtAdeEekyviAq 27 
                       v+YL A+eEe  +i  
       CCE29607.1 717 AVEYLDAEEEETSMICM 733
                      69**********99976 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.57
                       S-BETTSCBSSSE..EEEECS.......SC.......EEEEEGGG-SEEES CS
  RNA_pol_Rpb2_45   30 apldeegrfveer..VlaRrk.......ge.......velvepeeVdymDV 64  
                       ap+d+e++ +  r  V+ Rr+       +e       +++v++++V+y+ V
       CCE29607.1  951 APIDQENQDLGTRtsVHQRRDistplrsTEngiidsvILTVNADNVKYVKV 1001
                       677777766644411555554444444411455555589999999999876 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.15
                       CBSSSEEEEECSSCEEEEEGGG- CS
  RNA_pol_Rpb2_45   37 rfveerVlaRrkgevelvepeeV 59  
                       ++v+++++aR +g v++++++ V
       CCE29607.1 1132 HMVDDKIHARARGPVQIMTRQPV 1154
                       789*************9999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 8385.27
//
Query:       CCE29608.1  [L=92]
Description: related to cytochrome c oxidase assembly factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-26   92.1   2.8    2.2e-26   91.9   2.8    1.1  1  PET117    PET assembly of cytochrome c oxidase, mitochondrial
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.12   12.4   0.0    1.0  1  DUF3592   Protein of unknown function (DUF3592)


Domain annotation for each model (and alignments):
>> PET117  PET assembly of cytochrome c oxidase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   2.8   2.5e-30   2.2e-26       1      70 []       4      69 ..       4      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 2.5e-30
      PET117  1 AsKitLglsvlltaatvvgVHylQrlerealrqGvirDaerqaeKerkrkenkaeleeqkelrkkyekvQ 70
                AsK+tL++++l+t+++v+ VH++Q++e++a+++Gv+rD+e+q+ K    +e++ ++++q+el+ +y++ Q
  CCE29608.1  4 ASKLTLAGTCLATTGIVALVHFQQKWEKAAMHEGVVRDMEQQRIK----RERQLDFDMQRELEAQYKQHQ 69
                8********************************************....6*****************988 PP

>> DUF3592  Protein of unknown function (DUF3592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05      0.12      12      76 ..       8      72 ..       4      88 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
     DUF3592 12 llaglallvlgglllvgkyllsgqwervpgtvlssehrhrsdgsrsstysvtvrYrysfqg.ervs 76
                 lag++l+  g + lv+  +  +++   +g+v + e ++r  ++r+ +++++ + + ++++ ++v+
  CCE29608.1  8 TLAGTCLATTGIVALVHFQQKWEKAAMHEGVVRDME-QQRIKRERQLDFDMQRELEAQYKQhQTVR 72
                79*************99877777777779*******.88888888888888866666665546666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1044  (0.0582297); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 644.23
//
Query:       CCE29609.1  [L=232]
Description: probable VACUOLAR ATP SYNTHASE SUBUNIT G (VMA-10) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-30  103.4  13.7    1.1e-29  103.0  13.7    1.2  1  V-ATPase_G    Vacuolar (H+)-ATPase G subunit
  ------ inclusion threshold ------
       0.36   10.2  16.7      0.038   13.4  10.2    1.9  2  DUF3552       Domain of unknown function (DUF3552)
        0.8   10.2  13.9        1.2    9.5  13.9    1.3  1  V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
       0.94    9.2  10.0       0.82    9.4   8.0    1.8  2  ATP11         ATP11 protein
        2.1    8.3   8.8        3.4    7.6   8.8    1.3  1  RRF           Ribosome recycling factor
          5    7.2  20.0       0.74    9.9  10.1    2.1  2  ATP-synt_B    ATP synthase B/B' CF(0)


Domain annotation for each model (and alignments):
>> V-ATPase_G  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0  13.7   3.8e-33   1.1e-29       1     105 []     121     225 ..     121     225 .. 0.99

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 3.8e-33
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G   1 sqsqgIqqLLqAEkeAaeivkeArkrkakrlkqAkeeAekEieeyrakkekefkekeaeklgseeelekkieketeekikelkesvkknkeavvkellk 99 
                 ++s+gIq+LL+AE+eA++iv++Ar+ ++kr+++A++eA++Ei+ y+akke ef+++ ae++ ++e++e+++ ke++++ik++ke+ +k +++vvk+ll+
  CCE29609.1 121 QNSAGIQTLLDAEREASKIVQKAREFRTKRVREARDEAKQEIADYKAKKEDEFQKFGAEHSKGNEQAEAEASKEADKHIKTIKEAGSKGQASVVKNLLS 219
                 5899*********************************************************************************************** PP

                 HHTSXX CS
  V-ATPase_G 100 lvldvk 105
                 +v+dvk
  CCE29609.1 220 AVFDVK 225
                 ***997 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4  10.2   1.3e-05     0.038      23      81 ..     123     181 ..     110     187 .. 0.86
   2 ?    0.1   1.5      0.15   4.4e+02     176     190 ..     185     199 ..     174     205 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
     DUF3552  23 kiaekkiaeAeeeAkkiieeAkkeAeakkkealleakeeihklreelekelkerrnelq 81 
                 +   + + +Ae+eA+ki+++A+    +  +ea  eak+ei +++++ e+e+++  +e +
  CCE29609.1 123 SAGIQTLLDAEREASKIVQKAREFRTKRVREARDEAKQEIADYKAKKEDEFQKFGAEHS 181
                 555678899*****************************************998666665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.15
     DUF3552 176 eeakeeAdkkAkeii 190
                 e+a++eA k+A + i
  CCE29609.1 185 EQAEAEASKEADKHI 199
                 444444444444433 PP

>> V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  13.9   0.00042       1.2       7     102 ..     126     221 ..     117     223 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00042
                   THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH CS
  V-ATPase_G_2   7 lkeLaerEaeLdqrlEaArkeaereveaAeaeAarilreAeakakalqaeyeqelaeevarireeararaeaeaqavrkraearlqqAvelilkaV 102
                   ++ L + E+e ++ + +Ar+   ++v +A+ eA++ +++ +ak +   +++ +e ++  ++ ++ea ++a++  +++++++++  +  v++ l aV
    CCE29609.1 126 IQTLLDAEREASKIVQKAREFRTKRVREARDEAKQEIADYKAKKEDEFQKFGAEHSKGNEQAEAEASKEADKHIKTIKEAGSKGQASVVKNLLSAV 221
                   566677778888888888888888888888888888888888888888888888888888888888888888888888888888888888888887 PP

>> ATP11  ATP11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.39   1.2e+03     186     203 ..      64      81 ..      28      89 .. 0.87
   2 ?    9.4   8.0   0.00027      0.82       7      95 ..     136     225 ..     132     232 .] 0.71

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.39
                 TT-HHHHS-SEEEEEE-T CS
       ATP11 186 klrgefAqphttlthytd 203
                 k+  + +qpht    y++
  CCE29609.1  64 KTSSTLSQPHTSTAKYQE 81 
                 777888999999988887 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00027
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---.......SS--H.HHHS-HH CS
       ATP11   7 reKLeqkakeeglesieeLkeaykdkieekrkeaaaidleesksesekekeakasssektekkesaakskkkskskspvkpL.ssildle 95 
                 ++K+ qka+e   + + e ++++k++i + + +++   ++  +++s+ +++a+a++s++++k+ ++ k++ ++ + s vk+L s ++d++
  CCE29609.1 136 ASKIVQKAREFRTKRVREARDEAKQEIADYKAKKEDEFQKFGAEHSKGNEQAEAEASKEADKHIKTIKEAGSKGQASVVKNLlSAVFDVK 225
                 78*************************999998844434444444444555555555555555666677788889999998626677776 PP

>> RRF  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   8.8    0.0011       3.4      90     153 ..     143     205 ..     128     213 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHHHHHHH CS
         RRF  90 rrkelvkeakkaaekakvairniRrdankklkklekkiseDdvkkaekeiqkltdkyikeidel 153
                  r+  +k++++a ++ak++i + +++ +++++k   + s+   ++ae e  k  dk+ik i+e+
  CCE29609.1 143 AREFRTKRVREARDEAKQEIADYKAKKEDEFQKFGAEHSK-GNEQAEAEASKEADKHIKTIKEA 205
                 2333345555555555555555555555555555544444.33567777777777777777765 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  10.1   0.00025      0.74      57     105 ..     126     174 ..     113     179 .. 0.85
   2 ?    1.5   4.6     0.098   2.9e+02      56      79 ..     184     207 ..     168     225 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00025
  ATP-synt_B  57 eqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlkesAaaeIe 105
                  q l +A++eA++i+++A++ + k   e+++ea++e++  k+++++e +
  CCE29609.1 126 IQTLLDAEREASKIVQKAREFRTKRVREARDEAKQEIADYKAKKEDEFQ 174
                 467999************************************9998865 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.098
  ATP-synt_B  56 aeqqlkeAraeAaeiiknAkkeae 79 
                  eq+ +eA +eA++ ik  k++++
  CCE29609.1 184 NEQAEAEASKEADKHIKTIKEAGS 207
                 333333444444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1837  (0.10246); expected 358.6 (0.02)
Passed bias filter:                      647  (0.0360868); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1664.60
//
Query:       CCE29610.1  [L=612]
Description: related to nuclear associated protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-40  135.6   0.4    5.3e-39  132.6   0.1    2.6  3  CTNNBL          Catenin-beta-like, Arm-motif containing nucle
     0.0008   17.9   0.1     0.0011   17.4   0.1    1.2  1  SpecificRecomb  Site-specific recombinase
     0.0018   16.7   0.0     0.0033   15.8   0.0    1.3  1  DRIM            Down-regulated in metastasis
  ------ inclusion threshold ------
       0.04   13.9   0.1        3.1    7.7   0.1    2.9  3  DUF3361         Domain of unknown function (DUF3361)


Domain annotation for each model (and alignments):
>> CTNNBL  Catenin-beta-like, Arm-motif containing nuclear
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.1   1.2e-42   5.3e-39       2     103 ..      95     200 ..      94     201 .. 0.96
   2 ?   -0.9   0.0       0.4   1.8e+03      66      92 ..     305     332 ..     301     335 .. 0.79
   3 ?   -2.6   0.0       1.4   6.2e+03      47      78 ..     338     369 ..     332     383 .. 0.74

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 1.2e-42
      CTNNBL   2 eilelldeeeeeee....eekldeaalkklllklekkvkknqelRikyeddpekfmeSEadLdeeikelsvlaeapelYpelvelgavesLvgLlsHeN 96 
                 +il+++de++++e      +k+d+a+l+k++l++ek+++kn+elR+kye+dp+kf++SEadLd++ik ls+l+e+pelY e+v+lg+v+sLvgLl+HeN
  CCE29610.1  95 QILDFVDEAADQEGamkiPDKIDAAWLRKTMLTFEKHITKNAELRAKYENDPQKFISSEADLDADIKGLSILTEHPELYGEFVKLGSVNSLVGLLAHEN 193
                 7999999988877678899******************************************************************************** PP

      CTNNBL  97 tDiaiav 103
                 tDiai++
  CCE29610.1 194 TDIAIDA 200
                 *****97 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.4
      CTNNBL  66 lsvlaea.pelYpelvelgavesLvgLl 92 
                 l +la+a p+  ++l++l+av++L++L 
  CCE29610.1 305 LAILAQAsPSNCEHLASLDAVDTLLQLA 332
                 5577775266699************995 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.4
      CTNNBL  47 ddpekfmeSEadLdeeikelsvlaeapelYpe 78 
                  dp+k  e E  +++  ++l++la +p+   +
  CCE29610.1 338 RDPDKGGEEEEYMQNIFEALTCLADNPAGKIK 369
                 57777778888888888999999999976444 PP

>> SpecificRecomb  Site-specific recombinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   2.5e-07    0.0011      64     190 ..     269     403 ..     237     501 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.5e-07
  SpecificRecomb  64 tdaGllsrsgffselaerleekllPeapdeedlsdllsllfp.keeDaewlealdd.etlarLlelleeeeeeeeeaaeklreellealevlsvq 156
                     + + + +++++++ l +r+++k +P ++++++++++l+ l + ++++ e l++ld+ +tl +L+++ ++++ ++  + e++ ++++eal++l+ +
      CCE29610.1 269 AATRIGQQDALLQWLLQRIQRKENPVSQNKQYAAEILAILAQaSPSNCEHLASLDAvDTLLQLAATYRKRDPDKGGEEEEYMQNIFEALTCLADN 363
                     567788999****************************99886268999******9857899******9************************864 PP

  SpecificRecomb 157 .......iaalglepelrrrlpeleeeespFlalqreleal 190
                            + a+g+e  l+ +  e +++++p l+l  +++a 
      CCE29610.1 364 pagkikfLDAEGIELCLIMLK-EGKMSKAPALRLLDHAAAA 403
                     222222234566666666554.4455555555554444444 PP

>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.3e-07    0.0033     311     491 ..     166     339 ..     162     340 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.3e-07
        DRIM 311 WsssprlaplLakydssvlpavielLsapkakesVvefvldivenllkladeeeeeeedeeeigselLl.phvsslLeylsalleksaaskkdkskell 408
                 ++++p+l+  ++k     +++++ lL+++++   ++  ++++v +l + + + ++  ++ +   ++lL+ + +  l+++ls+l e+ +a+     +   
  CCE29610.1 166 LTEHPELYGEFVK--LGSVNSLVGLLAHENT--DIAIDAMEVVGELTDEDVSAQD--DQWDGLVDALLDaDLIGLLVSNLSRLDEQDEAD-----RSGV 253
                 5667777777776..6788999999999955..6777888999888885444333..344566667776145566666666666555432.....3334 PP

        DRIM 409 ereleiLsrl...aplvedseqassLldlllplLrkpsrrvsektk..velLkilenllrlydedevdlpekllktlsslfsrlkdre 491
                   +l i+ +l   a  ++   q+++Ll+ ll+ ++++ + vs++ +  +e+L il++  ++ ++++     + ++tl++l +++++r+
  CCE29610.1 254 YYALGIVENLcsrAAAATRIGQQDALLQWLLQRIQRKENPVSQNKQyaAEILAILAQASPS-NCEHL-ASLDAVDTLLQLAATYRKRD 339
                 455555555554488888889***********************87**************9.77777.77888899999988888775 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1   0.00069       3.1      64     137 ..     244     320 ..     174     331 .. 0.85
   2 ?   -3.7   0.0       2.4   1.1e+04       6      26 ..     370     390 ..     369     397 .. 0.82
   3 ?    2.6   0.0     0.026   1.2e+02       7      42 ..     426     460 ..     422     488 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00069
     DUF3361  64 ks.aadasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtna..laLlnALllkaddskrkela 137
                 ++ +ad s +  +l i+e++   + +   + +++  l+ L++++q +++ +++n    a + A+l++a+ s+ ++la
  CCE29610.1 244 EQdEADRSGVYYALGIVENLCSRAAAATRIGQQDALLQWLLQRIQRKENPVSQNKqyAAEILAILAQASPSNCEHLA 320
                 455778888999*********99999999999**************9999887742257799999999988877665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.4
     DUF3361   6 FisrdGlkllvkiveegkesg 26 
                 F+  +G++l + +++egk+s+
  CCE29610.1 370 FLDAEGIELCLIMLKEGKMSK 390
                 99999**99999999998765 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.026
     DUF3361   7 isrdGlkllvkiveegkesgeilayaLtafleLmdh 42 
                 +  +Glk+++++  +  ++++ la++L+ f +++ h
  CCE29610.1 426 VDAGGLKSIFTLFSKT-KDHRLLAHLLSLFSSMLRH 460
                 5678999999999996.6799*********999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4229.08
//
Query:       CCE29611.1  [L=1809]
Description: related to E. coli elongation factor-type GTP-binding protein lepa [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-48  162.7   0.0    1.8e-47  161.4   0.0    1.7  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    4.7e-43  145.7   3.3    9.5e-43  144.7   3.3    1.6  1  LepA_C       GTP-binding protein LepA C-terminus
    1.2e-19   70.1   0.0    2.8e-19   69.0   0.0    1.6  1  EFG_C        Elongation factor G C-terminus
    3.2e-15   55.9   3.0    8.4e-15   54.6   3.0    1.8  1  MIT          MIT (microtubule interacting and transport) doma
    5.5e-06   26.7   0.4    2.1e-05   24.8   0.2    2.2  2  GTP_EFTU_D2  Elongation factor Tu domain 2
     0.0013   18.7   0.0     0.0037   17.3   0.0    1.8  1  EFG_II       Elongation Factor G, domain II
     0.0021   17.7   0.0     0.0073   15.9   0.0    1.9  2  Ras          Ras family
  ------ inclusion threshold ------
      0.062   12.7   0.1       0.24   10.8   0.0    2.0  2  SRPRB        Signal recognition particle receptor beta subuni
       0.13   12.1   0.0       0.36   10.6   0.0    1.7  1  RF3_C        Class II release factor RF3, C-terminal domain
       0.32   11.9   1.6        1.2   10.1   1.6    2.0  1  FDF          FDF domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.4     8e+03     129     153 ..     943     975 ..     939    1013 .. 0.63
   2 !  161.4   0.0     1e-50   1.8e-47       2     193 ..    1211    1388 ..    1210    1389 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.4
                 EESCGST........HHHHHHHHHHHHHHHHHH CS
    GTP_EFTU 129 iNKmDrl........kaelkeiveevkqklsrk 153
                 + K+D +         + l+ i e+v++ lsrk
  CCE29611.1 943 VAKVDTCdadamldeMQALEGILEQVQTVLSRK 975
                 678888877666666667777777777777555 PP

  == domain 2  score: 161.4 bits;  conditional E-value: 1e-50
                  CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE.T.TCSSEEEEEEEESSSGGGHHHHHHHHHT-SE CS
    GTP_EFTU    2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle.k.etkkylinliDtPGHvdFskevirglrvlDg 96  
                  r+rn++i++h+DhGK+TL+drLl+ tg+is +    +++++lD+l+ ErergiT+k++++++  k ++++yl++l+DtPGHvdF  ev+r++  + g
  CCE29611.1 1211 RYRNFCIVAHIDHGKSTLSDRLLEFTGTISASD---GNKQILDKLDVERERGITVKAQTCTMLyKyRGEDYLLHLVDTPGHVDFRAEVTRSYGSCGG 1304
                  78****************************944...44569******************99986469****************************** PP

                  EEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU   97 avlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvellp 193 
                  a+l++da++G+++qt  +++la ++++ ++ +iNK+D++ a++ ++ e++++ +          + + +   + v +Sa++g+gv ++l a+ve +p
  CCE29611.1 1305 ALLLIDASQGIQAQTVANFHLAFAQDLALVPVINKIDMPAADIPRVLEQMESAF----------ELDPK---KAVLVSAKTGQGVPDVLPAVVEQMP 1388
                  ***************************************************999..........22333...689******************9988 PP

>> LepA_C  GTP-binding protein LepA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.7   3.3   5.3e-46   9.5e-43       1     106 [.    1702    1807 ..    1702    1808 .. 0.99

  Alignments for each domain:
  == domain 1  score: 144.7 bits;  conditional E-value: 5.3e-46
                  ESSCB-GGG-EEEETTTHHHHHHHHHHHHHHHS---SS-EEEEEEETTEEEEEEEE----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      LepA_C    1 ingekvdaLslivhrskaeergrklvekLkeliprqlfevaiqaaigskviaretikalrkdvlaklyggditrkkKllekqkegkkrlkkignvei 97  
                  +n+++vda++ ++h+s+ae+++r++v+k+k++++rq+fev+iqaa+gsk++aretik++rkdvlakl+++ditr+kKllekqk+g+krl+++gnv i
  CCE29611.1 1702 VNKNPVDAICRVLHHSQAERVARQWVTKFKQHVDRQMFEVVIQAAVGSKILARETIKPYRKDVLAKLHASDITRRKKLLEKQKDGRKRLRSVGNVVI 1798
                  79*********************************************************************************************** PP

                  XXXXXXXXX CS
      LepA_C   98 pqeaflavl 106 
                   qeaf+++l
  CCE29611.1 1799 AQEAFQNFL 1807
                  *******99 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   1.5e-22   2.8e-19       2      86 ..    1613    1698 ..    1612    1701 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 1.5e-22
                  EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-T.THHHCHHHCTTTS-EEEEEEEEEEE--HHHH CS
       EFG_C    2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeli.gfateLrslTkGegsfsmefsgYeevpgdkl 86  
                  + EP+v+++++vp+ey+g+vi+++++ rGe+++ e   +++vi+ +++P+a+l+ +f+ +L+ +TkG++++++e +g++ ++ +kl
  CCE29611.1 1613 VQEPYVRATMTVPQEYLGRVIELCEANRGEQKSLEFFHGDQVIVVYDVPSAQLVeDFFGKLKGATKGYATLDYEDAGWRDSRLVKL 1698
                  68*****************************************************************************9998876 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   3.0   4.7e-18   8.4e-15       1      65 []     223     288 ..     223     288 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 4.7e-18
         MIT   1 ldkAlelvkkAveeDnagnyeeAlelYkealelLlqalke.kneerrellrekieeYleRaeeLke 65 
                 l++Al+++++Av++Dna+nye A + Y ea++lL+++l   +++e+r++l++  ++Y +R+eeL +
  CCE29611.1 223 LSRALQKANTAVQLDNAHNYEGARRSYVEACDLLKHVLVKtTADEDRKKLEAIRRTYDARIEELDQ 288
                 799************************************66999*******************975 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       8.2   1.5e+04      32      58 ..     598     625 ..     591     633 .. 0.49
   2 !   24.8   0.2   1.2e-08   2.1e-05       1      73 [.    1412    1483 ..    1412    1484 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 8.2
                  EEEEEEEEEETEEESEE.ETTSEEEEEE CS
  GTP_EFTU_D2  32 vtrissletfhededea.vaganaGviv 58 
                  v +is l ++  + +ea +aga +    
   CCE29611.1 598 VRKISILRRPLSRNQEAeEAGATVSEQG 625
                  3445555555554444434444444333 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 1.2e-08
                   EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEE..EEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2    1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGv..ivaikgledaiivGdtl 73  
                   G+v l+r+++Gt++ Gd+v+   ++t+ k  v++++  +    +++ ++ag++++v  + ++k + da + Gdt+
   CCE29611.1 1412 GVVLLVRLFDGTIQAGDNVVS--LGTGHKYTVGQVGIQYPDGMPQKVLRAGQVGYVyfNPGMKRIQDA-KLGDTF 1483
                   89*******************..88888999********************98765115578888887.888887 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.1e-06    0.0037       2      73 ..    1501    1575 ..    1500    1577 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.1e-06
      EFG_II    2 PePvislaiepkskadedklskaLarlleEDptlrverdee...TketilsGmGelHleivverlkreykvevel 73  
                  P+P++++a  p++++d + l++++ +l+  D ++++++d        + l  +G lH  +  +rl++e++ +v l
  CCE29611.1 1501 PKPMVFVAAFPTDQSDYTPLAESIYQLVLNDRSVTLQKDHSealGSGWRLGFLGSLHCSVFQDRLRQEHGRSVIL 1575
                  9***********************************99975222356778889***************9988876 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.1e-06    0.0073      30     160 ..    1260    1387 ..    1250    1389 .. 0.85
   2 ?   -2.5   0.0       1.9   3.4e+03      89     105 ..    1721    1738 ..    1693    1767 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.1e-06
                  TTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG-SS-HHH CS
         Ras   30 sTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravstee 126 
                   T+ ++  t   +++g+++ l++ DT G  +f++  + +y ++ g+ll+ d ++    ++v++++  + +    ++++v v nK+D+      +  e
  CCE29611.1 1260 ITVKAQTCTMLYKYRGEDYLLHLVDTPGHVDFRAEVTRSYGSCGGALLLIDASQGIQAQTVANFHLAFAQ----DLALVPVINKIDMPAADIPRVLE 1352
                  577777777778889**********************************999999888888888765544....57789999******977777777 PP

                  HHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  127 geelakelg.lkfletSAktnenveeafeellrei 160 
                    e a el+  k + +SAkt ++v +++ ++++++
  CCE29611.1 1353 QMESAFELDpKKAVLVSAKTGQGVPDVLPAVVEQM 1387
                  788888888889999***********999999887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.9
                  THH.HHHHHHHHHST.TTS CS
         Ras   89 nvk.kwveeikrvae.env 105 
                  +v+ +wv+++k++++ + +
  CCE29611.1 1721 RVArQWVTKFKQHVDrQ-M 1738
                  33337777777777742.2 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.6   2.9e+03     137     166 ..     322     351 ..     320     356 .. 0.80
   2 ?   10.8   0.0   0.00014      0.24      15      69 ..    1244    1298 ..    1213    1341 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.6
                 HHHHHHHHHHCHHHHHH------T....T- CS
       SRPRB 137 LEkElnkiierrskalkeldeeedksavla 166
                 +E+E++ + + r+ a ++++ + + s +++
  CCE29611.1 322 VEREITALSVAREEAASQQQRSRQDSRYFS 351
                 699*********999999987777666665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00014
                  SHHHHHHHHHHS.S---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHH CS
       SRPRB   15 GKTslftrLttd.svkktvtSqessaalkvksekgskltliDfPGheklrqkllek 69  
                  G   ++ +L  + +   tv +q  ++ +k+   ++  l+l+D PGh+ +r +++ +
  CCE29611.1 1244 GNKQILDKLDVErERGITVKAQTCTMLYKY-RGEDYLLHLVDTPGHVDFRAEVTRS 1298
                  555667777666466679999999999999.677899**************98876 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0002      0.36       9      85 ..    1503    1582 ..    1496    1616 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
                  -SEEEEEEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TS...S-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--E CS
       RF3_C    9 PElfarvrlkdplkrkqlrkgleqLaeEGavqvfkeeeag...eelilgaVGqLQfeVveeRlknEYgvevrleslpysl 85  
                  P +f     +d++ +  l + + qL        +++++++   + + lg +G+L   V+++Rl++E+g +v l++ ++ +
  CCE29611.1 1503 PMVFVAAFPTDQSDYTPLAESIYQLVLNDRSVTLQKDHSEalgSGWRLGFLGSLHCSVFQDRLRQEHGRSVILTEPSVPT 1582
                  6677788888888888999999998876655555544443353779**********************999988766544 PP

>> FDF  FDF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.6   0.00067       1.2      21      87 ..     525     589 ..     521     621 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00067
                 HCCHHHCC-XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXBXXBXXXXXXXEEEXTTXXEEEXXXHH CS
         FDF  21 vfeellkkaklkeeklaknenaatatatneqpgekvegvdkkksffDkiSsegnergaqeheseedd 87 
                 v ++l+k+++  e  +++  ++++  +++e p+++++++ k+++f D   s+++e+ + e+  +e++
  CCE29611.1 525 VTKALRKVEEARERVRQT--EREAYPDEHERPETQQQNYPKSDGFYDDSLSSDEEEHILEEMTREYN 589
                 556677777777755555..488889999******************99999999988887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.01u 0.27s 00:00:01.28 Elapsed: 00:00:00.47
# Mc/sec: 11658.20
//
Query:       CCE29612.1  [L=549]
Description: uncharacterized protein CPUR_03459 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.063   13.4   0.2       0.12   12.5   0.2    1.4  1  NPP1      Necrosis inducing protein (NPP1)
       0.23   11.0  15.7       0.34   10.4  15.7    1.2  1  Lin-8     Ras-mediated vulval-induction antagonist


Domain annotation for each model (and alignments):
>> NPP1  Necrosis inducing protein (NPP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   1.3e-05      0.12     112     172 ..     204     263 ..     189     268 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
        NPP1 112 gkykkktkastvrlegshvkivyhkdgagthalrfaeakdgetqpLvsweqlpdaardaLn 172
                 ++y+   + +++ ++++  +i y +d+ +++  ++a++k+++t++L+sw++ +++++++L+
  CCE29612.1 204 EEYDDM-EGNEMDYDDQGNEIIYPEDSNTDEMADLARKKESQTRKLLSWDETQQNMQQELL 263
                 566665.777899999999***************************************996 PP

>> Lin-8  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  15.7   3.8e-05      0.34     140     264 ..     137     260 ..     122     301 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.8e-05
       Lin-8 140 ddddiiyegyleaeegedteeeekveveeeaeeqgsmdlketeaeevkeeqmeqsfeeeeeakleeptvniveeea.aaravdqsfgsaeqqlessssr 237
                  dd+++++++ ++e ++d+ ++e+ e+eee+ee+++ d +++e+ee+++e+me ++  +e+  +e +  + +++++ ++ ++d++ ++   +++s   +
  CCE29612.1 137 GDDELDADELYQGELDADYLDDEEEEEEEEEEEKEEND-EDKEDEEMEDEEMEDEYY-DEMDYEEYEYDEEYDDMEgNEMDYDDQGNEIIYPEDSNTDE 233
                 6899********99999999999999999999999999.9999**********9999.56666665655555555505555666666667788888889 PP

       Lin-8 238 tssassssssaapsstaakdfeeemkq 264
                 + ++  +++s+ ++  + ++ +++m+q
  CCE29612.1 234 MADLARKKESQTRKLLSWDETQQNMQQ 260
                 999999999999999999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1566  (0.0873445); expected 358.6 (0.02)
Passed bias filter:                      748  (0.0417201); expected 358.6 (0.02)
Passed Vit filter:                       179  (0.00998383); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.48
# Mc/sec: 3416.90
//
Query:       CCE29613.1  [L=396]
Description: uncharacterized protein CPUR_03460 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-83  277.6   0.0      1e-82  276.9   0.0    1.3  1  SRAP      SOS response associated peptidase (SRAP)


Domain annotation for each model (and alignments):
>> SRAP  SOS response associated peptidase (SRAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.9   0.0   5.8e-87     1e-82       1     219 []       1     268 [.       1     268 [. 0.87

  Alignments for each domain:
  == domain 1  score: 276.9 bits;  conditional E-value: 5.8e-87
        SRAP   1 MCgRyaltlapeelaeeleae.......eedke......lrpsynvaptqkvpvvva...........................eeeeeeeeee..... 54 
                 MCgRyal+l++++++++l+++           e      +r+syn+ap+++++v++a                           +        +     
  CCE29613.1   1 MCGRYALSLRASQVRQMLQEDnvvvdetV---EddgpdaPRQSYNFAPGYHGVVYRAdtpdwgagprsdahrahydedggndadD--------Acdaga 88 
                 ****************9995556554431...14556669****************98999998888887777666655555550........045555 PP

        SRAP  55 .........erklqamkwGlvPswakdpkklg..lktiNaRsetlae.kplfrsalkkkRcvvpadGFYEW.kkkgkekqPyfikrkdgkllalAGLyd 140
                          ++klqamkwGlvP+w+k++ +++  +ktiN+R+++l++  ++++s+++kkRc+v+a+GF+EW k+  kek P+++krkdg+l+++AGL+d
  CCE29613.1  89 adnadashvKYKLQAMKWGLVPFWTKRNPDYQtlMKTINCRDDSLSSpGGMWASIKSKKRCIVIAQGFFEWlKTGPKEKLPHYVKRKDGRLMCFAGLWD 187
                 555566667****************997555445************99***********************66566*********************** PP

        SRAP 141 vweeegeeeklytytiiTteankqlaelHdRmPviLee..eelraWLdp.rkedskelqellkpaeeeelevypVskeVnkv 219
                 ++++ g+eeklytytiiTt++nkql++lHdRmPv+L++  +e+r+W dp ++ +s+elq+ll+p+e+ elevypVsk+V+kv
  CCE29613.1 188 CVQYPGSEEKLYTYTIITTDSNKQLRFLHDRMPVVLDPgsDEMRRWVDPgSHGWSRELQALLRPFEG-ELEVYPVSKDVGKV 268
                 ************************************9989*************************99.************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2888.03
//
Query:       CCE29614.1  [L=417]
Description: uncharacterized protein CPUR_03461 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-26   92.9   0.4    6.8e-26   91.1   0.4    1.7  1  Glyco_hydro_88  Glycosyl Hydrolase Family 88


Domain annotation for each model (and alignments):
>> Glyco_hydro_88  Glycosyl Hydrolase Family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.4   3.8e-30   6.8e-26     105     343 ..     145     416 ..     130     417 .] 0.80

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 3.8e-30
                     HHCS-B.TTS.B.SBTTSTTEEETHHHHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHHHBETTTSEB-SEEETTTTSTTS........--BHH CS
  Glyco_hydro_88 105 lakpprtseGgfwhkkkepeqlWlDgLfMaipllaklskvtgepkyldeaikqflltarhlfdpetGlyyhgwdesgtedwak.......efWaR 192
                     la ++r+ + g+w   ++pe+ +lDg f  +p++a       +p+  ++++ q++l  +h   p+t l++hg+d s++  wa         +W+R
      CCE29614.1 145 LAIQKRNPDHGLW-YYVYPEWSYLDGVFSLLPYMA----SQPQPDH-QDMMLQIRLLSEHCTQPNTSLPVHGYDWSRKAIWASkntgaspYVWGR 233
                     4455666666777.4799*********95555554....3444554.4566799****************************99*********** PP

                     HHHHHHHHHHHHHHH.............S-TT-TTHHHHHHHHHHHH....HHHHCTS-.TTSSEBSBTT-TT.TTSSBEHHHHHHHHHHHHHHH CS
  Glyco_hydro_88 193 gngWalaglaevlel.............Lpekekarqelinllrdlv....kalaklqd.eeglWhqilddgs.kesylEtSatalfvygLakgv 268
                     + gW +agl+++ e               + +  a+++l +l+++++     al k+ d ++g W qi++ +  +++ylE+S talfv + +k+v
      CCE29614.1 234 SLGWFIAGLVQTWEQlscqhhaagptgtGNGNGNAYDQLCQLIQEQTshisAALLKYADpKTGAWWQIITLPGrEGNYLESSSTALFVFSYLKAV 328
                     ***************7777777777664223556677777777766522236899***************9999********************* PP

                     HTTSS....-...HHHHHHHHHHHHHHHHHC...EE-TTS-EEE-SEETS--SCTC...HHHHTS-EESS-HHHHHHHHHHHHHHHHH CS
  Glyco_hydro_88 269 nkgll....d...kkkykkvaqkawkallkk...aveedGqllvkqvsvgtgiggd...dyYksvdvnsiedygvgafllalievlrl 343
                     + gll    d   ++ yk +a ka+++  +    ++  +G+++  +++++ ++      +yY++++ + ++  g+ a++la++ev+rl
      CCE29614.1 329 RTGLLsggdDgaaTEVYKRAALKAYEYTNRVfvtKSAGNGTVGFDKTVAVCSLNSTatyEYYVKQPLSPNSLLGESAYILASLEVERL 416
                     ****9444212224678999999999987777667888999998887777776666667**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2997.82
//
Query:       CCE29615.1  [L=295]
Description: uncharacterized protein CPUR_03462 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-09   38.4  11.5    1.1e-09   38.4  11.5    2.2  2  WSC         WSC domain
    0.00062   19.9   0.4    0.00062   19.9   0.4    1.9  2  Podoplanin  Podoplanin
  ------ inclusion threshold ------
      0.092   12.7   0.0       0.18   11.8   0.0    1.4  1  PTP_tm      Transmembrane domain of protein tyrosine phosphat


Domain annotation for each model (and alignments):
>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4  11.5   1.8e-13   1.1e-09      11      82 .]      27      95 ..       8      95 .. 0.89
   2 ?   -1.5   0.0      0.48   2.9e+03      50      57 ..     204     211 ..     194     216 .. 0.76

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.8e-13
         WSC 11 srrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82
                s+++ ++s ++++ +++++C+a+C  ++y+ya+l+++  C+C+n  p++av+ s + C+ +C+G+++++CGg
  CCE29615.1 27 SENTASTSPTTNTFQSVGACTATCG-NQYAYAVLQSS-MCWCSNVSPDTAVQRSGA-CHLPCPGYPADICGG 95
                4556677778889999********8.88*******88.***************887.**************8 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.48
         WSC  50 CyCgnslp 57 
                 C Cg  l+
  CCE29615.1 204 CLCGAALA 211
                 ****9886 PP

>> Podoplanin  Podoplanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.4      0.23   1.4e+03      89     111 ..      15      41 ..      11      57 .. 0.60
   2 !   19.9   0.4     1e-07   0.00062      56     154 ..     123     222 ..     105     227 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.23
                 XXXXXXXXXXXXXXXXXXXXXX....X CS
  Podoplanin  89 tvkakeesqstttlnvvtshst....e 111
                 t +a++++q  ++ n+++ ++t    +
  CCE29615.1  15 TAAAQQQQQLCASENTASTSPTtntfQ 41 
                 556666666666666666555533333 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1e-07
                 XXXXXXXXXXXXXXXXXXX-----GGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX.XXXXX CS
  Podoplanin  56 seepyesglttlvptstesvtdlrledlptaestvkakeesqstttlnvvtshstekvgeetettvekdGLatvtLvgiivGvllaigf.igg.iiivv 152
                  +e  +s l t  p s +    ++ +   + ++t  ++  +  t t+     ++t+  + e  tt++++ L+t ++vgi++G l + ++ i+g   +++
  CCE29615.1 123 DSETPSSTLRTTTPPSHNASPTQQQQPIHV-QTTAPNGIIHTITVTPTDRPTSPTSPPTSESITTIQQNPLSTGAIVGIVLGCLCGAALaIAGtACLIL 220
                 333333444443444433333222232222.4455666666667666655555668889999**********************865543444044444 PP

                 XX CS
  Podoplanin 153 vr 154
                  r
  CCE29615.1 221 SR 222
                 45 PP

>> PTP_tm  Transmembrane domain of protein tyrosine phosphatase, receptor type J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     3e-05      0.18     150     183 ..     187     224 ..     174     225 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3e-05
      PTP_tm 150 lPqdP...gviaGavlGcilg.alvivavgGfifwrkk 183
                 + q+P   g i+G vlGc+ g al+i+  +  i+ rk+
  CCE29615.1 187 IQQNPlstGAIVGIVLGCLCGaALAIAGTACLILSRKR 224
                 5566666699*********9735899999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2179.75
//
Query:       CCE29616.1  [L=518]
Description: related to acid phosphatase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-18   67.4   0.1    4.8e-18   66.4   0.1    1.5  1  Metallophos      Calcineurin-like phosphoesterase
    1.1e-13   51.8   0.0    6.7e-13   49.3   0.0    2.3  2  Metallophos_C    Iron/zinc purple acid phosphatase-like prote
      7e-12   45.8   0.5    1.5e-11   44.7   0.5    1.5  1  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
     0.0011   19.2   0.4     0.0027   18.0   0.4    1.7  1  fn3              Fibronectin type III domain


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.1   1.1e-21   4.8e-18      23     203 ..     180     409 ..     164     410 .. 0.63

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1.1e-21
                  HHHHHHHHHTTESEEEEEST..SSSSS.............HHHHHHHHH.HHHHHHH..TSEEEEEC-TTS........................... CS
  Metallophos  23 kllddllreekpdlvllaGD..lvdrg.............dlekellel.laalvky..pipvylllGNHe........................... 75 
                  +l + +   ++  +++++GD  +                 d  +++le+ +++l +   ++p+++ +GNHe                           
   CCE29616.1 180 RLAQTI---NDYEFIVHPGDlaY--ADdwllkehnvlegrDAYQAILEQfYDQLSPIaaRKPYMASPGNHEascqeipwttefcpkgehnftdfmtrf 272
                  333333...6789*******663..44448888888888855555555557777777889***********999999877766665555444444433 PP

                  ......CHHHHHHHHHHHHHHHHHHHEHH......................HCEEETSEEEEEETTEEEEEEEESE..CEEE.....THHHHHHHHHH CS
  Metallophos  76 ......gfeeellnkygylgifsepwrsd......................aevfnnlplaslgsgslkvlllhGg..spel.....lvsldklgsln 138
                                              +                        +f++ +  +      +++ ++ +  +             +l+s +
   CCE29616.1 273 gssmppS---------------------FvstsrntqarinankaqhlskpPFWFSFEYGMA------HIVMIDTEtdF--PrapesPFGEAQLNSGP 341
                  3333221.....................1222222222222222222111233333333333......33333333221..02222233445555555 PP

                  HSCHHHHCCHHHHHH...HHHHTTCSEEEEEESSESS..CSSSCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 139 leleapepgdewlkd...lekrekadwvivlgHsply..rgsgylfgdealedllkkygvdlvisGHtHv 203
                  +  ++++   e+l+    +++r+ ++w+iv gH+p+y  + s +   ++a+e+ll kygvdl i+GH+H 
   CCE29616.1 342 FGAPNQQ--LEFLEAdlaSVDRTVTPWLIVAGHRPWYtaSDSACKPCQDAFEPLLHKYGVDLAIFGHVHN 409
                  5555555..9999999***********************9*****************************6 PP

>> Metallophos_C  Iron/zinc purple acid phosphatase-like protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         1   4.5e+03      32      51 ..     109     127 ..      91     131 .. 0.83
   2 !   49.3   0.0   1.5e-16   6.7e-13       1      63 []     431     494 ..     431     494 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1
  Metallophos_C  32 stdyGygrltvhNathLlwe 51 
                    +t y y +++  N+t ++++
     CCE29616.1 109 ATKYCYQIVST-NSTRASFQ 127
                    57799999999.***99998 PP

  == domain 2  score: 49.3 bits;  conditional E-value: 1.5e-16
  Metallophos_C   1 ApvhiviGaAGndegdafkgeppqpewsafr.stdyGygrltvhNathLlwefvrssdgkviDs 63 
                    Ap++i++G+AGn+eg a  +++ +p ++af+  +d+ y+++++ +a++L+++fvrs++g+v+Ds
     CCE29616.1 431 APMYIIAGGAGNIEGLAKVPKEGRPAYTAFAyGEDFAYATVSFEDAQNLRVDFVRSATGEVVDS 494
                    8**************5555567799******8888****************************8 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.5   3.4e-15   1.5e-11       3      92 ..      36     126 ..      34     129 .. 0.78

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 3.4e-15
  Pur_ac_phosph_N   3 qvhlsltedtstsmtvsWitpektkksvvrygtssda.......lestaeatsstyettnyksgyshkatltgLepgttYyYrvgddeggwSev 89 
                      q ++++ +  ++s+tvsW+t +k  k+ vryg  +++       l++++   +s+ +t+ + + y h++t+t+L p t+Y+Y++ +++   S  
       CCE29616.1  36 QQRIAVHG--PNSITVSWNTYKKLRKACVRYGVRNGEddyaqcaLTQNVCSPESA-QTYPSSRTYFHSVTITDLLPATKYCYQIVSTN---STR 123
                      66777888..9***********************999666666544443333332.237899***********************999...544 PP

  Pur_ac_phosph_N  90 ysf 92 
                       sf
       CCE29616.1 124 ASF 126
                      444 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.4   5.9e-07    0.0027       9      79 ..      40     122 ..      32     128 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.9e-07
                 EEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTS...........TEEEEEECSTSS.EEEEESSSTTEEEEEEEEEEETS CS
         fn3   9 sevtstsltvsWeppkdgggpitgYeveyrekgsee...........ewneftvprttt.svtltgLkpgteYevrVqavngg 79 
                    +++s+tvsW+  k+++   ++Y v+  e++  +             +++  +rt   svt+t+L p t+Y  ++ + n  
  CCE29616.1  40 AVHGPNSITVSWNTYKKLRKACVRYGVRNGEDDYAQcaltqnvcspeSAQTYPSSRTYFhSVTITDLLPATKYCYQIVSTNST 122
                 44499**********999999999999987777777888889999666666666666446****************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3671.00
//
Query:       CCE29617.1  [L=622]
Description: related to transcription activator amyR [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-10   40.7  10.0      4e-10   39.7  10.0    1.6  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
    2.1e-09   36.8   0.3    3.9e-09   35.9   0.2    1.3  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7  10.0   4.4e-14     4e-10       1      38 [.      20      56 ..      20      58 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 4.4e-14
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysessk 38
                +aCd+Cr +K++Cd+ +P C+nC  +n+eCt+   ++k
  CCE29617.1 20 QACDSCRVRKIRCDGIRP-CANCLHVNCECTYLAVPKK 56
                69****************.************7776665 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.2   4.4e-13   3.9e-09      66     181 ..     228     365 ..     166     396 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 4.4e-13
  Fungal_trans  66 s.................................qefiafplraeilihedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgL 129
                   s                                   fi + +ra+ +   d++  +s l+++q+ ++l    +++++ ++++ ++  a+++++sl++
    CCE29617.1 228 SstssfassrlfparqeppttpfahpppsgiptaEFFISETVRARNFC--DCVEHPS-LTTVQTSFFLFSAFFCLGKDTSAWHYIREAMTVVQSLRF 321
                   233344444566666666666666677777777767888888******..9999999.*****999999999999999******************* PP

  Fungal_trans 130 hrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpp.llddsqi 181
                   h++  y        +++  a   rR++w  F++++ +al+  rp  l    q 
    CCE29617.1 322 HEEATYRAI-----SDAVRARYTRRMFWVLFITERAYALQRHRPLtL----QS 365
                   ******994.....888889*******************99999844....44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4549.13
//
Query:       CCE29618.1  [L=566]
Description: related to acid beta-fructofuranosidase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-48  164.3   0.1    7.6e-48  163.6   0.1    1.2  1  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom
    1.8e-25   89.8   0.1    2.8e-25   89.2   0.1    1.2  1  Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
    0.00011   22.3   0.0    0.00017   21.7   0.0    1.2  1  DUF4975          Domain of unknown function (DUF4975)
     0.0079   15.5   0.6        2.7    7.2   0.0    2.7  3  Glyco_hydro_43   Glycosyl hydrolases family 43


Domain annotation for each model (and alignments):
>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.6   0.1   1.7e-51   7.6e-48       1     293 [.      11     336 ..      11     342 .. 0.86

  Alignments for each domain:
  == domain 1  score: 163.6 bits;  conditional E-value: 1.7e-51
                      SB--SSEEEEEEEEEEE..CTTEEEEEEEEETTSSSS-SBEEEEEEESSSSSBEEEEEEE-SSSGGCTTEEEEEEEEE-TT-....EEEEEEEE CS
  Glyco_hydro_32N   1 HfqppkgwlNDPnglvy..ykgeYhlFYqynpkgavwgnisWghavSkDlvhWeelpvalapdeefdsngafSGsavvdddk....lvllYTgn 88 
                      Hf +p+ w NDP g vy     eY l Yq+np  ++ gn  Wg a+SkDlv+W++  +a+ + +++ds g+fSG++v    +    l+l+YT+ 
       CCE29618.1  11 HFIAPHSWSNDPCGAVYvpESQEYLLCYQWNPGTTEGGNCAWGMAKSKDLVTWTDCMPAIWNGTSYDSVGVFSGCIVSRLVEgkrvLYLYYTSV 104
                      9****************666889*********999999************************************9986544334569******* PP

                      -T..........CSEEEEEEEEESSTTSSEEE-TT--SB-.-TTT.STTSEEEEEEEEET.........TTEEEEEEEECCT.TCCEEEEEEES CS
  Glyco_hydro_32N  89 vk..........eeeqvQnlayskdkgreftkyeenpviaekpee.ntkhfRDPkvawke.........dgkwvmvvgaqdk.kkgkillYksk 161
                      ++          +  ++Q++a+s+d gr++ ++e np+i e+p++  t+  RDP v              ++ +m+++++++ +  ++ lY s+
       CCE29618.1 105 SAlpihwskpyiKGCETQSMAVSTDLGRTWVRHESNPLIGEAPKKaATTGWRDPFVSPSAslsrllglpREHDFMMMSSGERgRGPQLHLYGSE 198
                      99********97669**************************9988899******99643322223334334445666666665999******** PP

                      SSSSEEEECCESEECC.T..........TTEEEEEEEEEEECSTT-ECEEEEEEEEC.STTTTTTEEEEEEEEEETTTTEEEEC.CCCCEESBS CS
  Glyco_hydro_32N 162 dlkewelaselleskkek..........ggmwEcpdlfeldekdeeekvklvlkvspqgledntsqdyyfigkfdaekkkftad.eeelkelDy 244
                      dl++w++ s++l  + ++          g+ +Ec  +f++ ++d    + + +  s +++++n +   ++ g+f+ ++k++ +   +  + lD+
       CCE29618.1 199 DLHSWNYISTVLDVQLHSvisetsnlkwGMNFECASFFTIGQTD---YIIVGIEESEESTNHNAHYVLWMAGEFHLDEKNLPTFkIRGHEVLDH 289
                      ********99988877667788899999999************9...5555555566666688899999******9999994446667789*** PP

                      SSS-EEEEEECCTTTCEEEEEEES-TTTHCCCCC.CTEE-EE--EEEEE CS
  Glyco_hydro_32N 245 GkdfYAsqtfededkrriligWmgewdseeadvpekgwagalslpRelt 293
                      G   YA++ f de++r + +gW++e+ ++ + v+++gwag+l  pRelt
       CCE29618.1 290 GI-LYAAHLFRDESDRLLQLGWADESAKK-HIVQDQGWAGCLGHPRELT 336
                      **.************************95.88889************98 PP

>> Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.1   6.2e-29   2.8e-25      23     139 ..     387     502 ..     371     521 .. 0.82

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 6.2e-29
                      ..SEEE-SSSEEEEEEEEE-.-GGGTEEEEEEEES..SS--EEEEEETTTTEEEEE-TTSG...GTTT----.EEEE---....-EEEEEEEET CS
  Glyco_hydro_32C  23 nkelgslsggqlelelefelssgsagpfglkvlasedleeettiyydpsrsslvvdRtksgetdfkndfasg.esaplel..dgklkLrilvDk 113
                      +++ ++ls++ +e+ ++f+   ++ ++f ++vl s+d++e+t++++d ++++++vdR+ks+    k+  ++   s++++l   ++l++ri+vD 
       CCE29618.1 387 LTQFKQLSSENFEVRAKFSN-VTGRERFVFHVLRSPDGHETTSLVFDLKTQTISVDRSKSS---LKQLGTTSpDSGHMRLlpGEDLDVRIFVDV 476
                      44555588999997777777.9**************************************5...335666667899999998779********* PP

                      TEEEEEET.TTEEEEEE--...TTTTE CS
  Glyco_hydro_32C 114 ssvEvFvndGrtaiTsrvyPt.edstg 139
                      s++E+++n +r+a+TsrvyP+ e s++
       CCE29618.1 477 SIIEIYAN-DRFALTSRVYPSlETSKQ 502
                      ********.************644443 PP

>> DUF4975  Domain of unknown function (DUF4975)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.7e-08   0.00017      45     153 ..     386     496 ..     380     517 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3.7e-08
     DUF4975  45 ayvlfnRLksknkisftvktsek..sdkFGislvrgtDskkyysivvnpedrklnfekegeegkgf.ieaidevafekpaDnvykvkiytdnsvcvvYi 140
                 a  +f+ L+s+n  ++ +k s+    ++F + + r+ D +++ s+v++++ + + ++++    k++ + + d   +     +   v+i+ d s++ +Y 
  CCE29618.1 386 ALTQFKQLSSEN-FEVRAKFSNVtgRERFVFHVLRSPDGHETTSLVFDLKTQTISVDRSKSSLKQLgTTSPDSGHMRLLPGEDLDVRIFVDVSIIEIYA 483
                 667788888776.455555555411678****************************8877776665244556677777777889*************** PP

     DUF4975 141 ndkvaftnRiydl 153
                 nd++a t R+y  
  CCE29618.1 484 NDRFALTSRVYPS 496
                 ***********65 PP

>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0019       8.5      34      84 ..      51     102 ..      30     134 .. 0.73
   2 ?   -1.6   0.0      0.29   1.3e+03     197     232 ..     111     146 ..      90     154 .. 0.77
   3 !    7.2   0.0    0.0006       2.7      25      69 ..     180     227 ..     172     271 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0019
                     EEEEEEESSSSSCEEEEECEESTTTCSTTTEECTEEEEEE....EETTEEEEEEE CS
  Glyco_hydro_43  34 glrifhSkdLvnWkqvgrvlerrsqlsmkgknasWAPeis....khdgkyylyyt 84 
                      + + +SkdLv+W++  +++ + ++ ++ g    +  +i     + +   ylyyt
      CCE29618.1  51 AWGMAKSKDLVTWTDCMPAIWNGTSYDSVGV---FSGCIVsrlvEGKRVLYLYYT 102
                     57799**********9988876666664333...344443222244444566666 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.29
                     EEESTSSTTEEEEEEEESSTTSGGEEECTCCSEE.T CS
  Glyco_hydro_43 197 aaeggtgseyavvvarsksllgPyewkkknpiltsr 232
                     ++   +++ +++++a s++l   +  +++np++ + 
      CCE29618.1 111 WSKPYIKGCETQSMAVSTDLGRTWVRHESNPLIGEA 146
                     556666777788899999999999999999988764 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0006
                     EEEEBTEE..SEEEEEEESSSSSCEEEEECEESTTTCST.TTEECTEE CS
  Glyco_hydro_43  25 vtstfewf..pglrifhSkdLvnWkqvgrvlerrsqlsm.kgknasWA 69 
                     ++s+ e+   p+l ++ S+dL  W+ +++vl+ + +  + + +n+ W 
      CCE29618.1 180 MMSSGERGrgPQLHLYGSEDLHSWNYISTVLDVQLHSVIsETSNLKWG 227
                     444444444599******************997755444144444464 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3967.00
//
Query:       CCE29619.1  [L=94]
Description: uncharacterized protein CPUR_03466 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.065   13.2   1.2      0.087   12.8   1.2    1.2  1  PepSY_2   Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.2   4.8e-06     0.087       3      39 ..       8      44 ..       6      49 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.8e-06
     PepSY_2  3 alalalallaaaAlAgrrdtdspkadwlpreklvakl 39
                 l ++++lla  A+A++ ++  p+++   r+++ a++
  CCE29619.1  8 VLSAVAVLLANQAVAAPGQDVMPRDEVSARAEMAAMI 44
                57799999*******6666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 711.35
//
Query:       CCE29620.1  [L=74]
Description: uncharacterized protein CPUR_03467 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 555.99
//
Query:       CCE29621.1  [L=320]
Description: uncharacterized protein CPUR_03468 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-05   23.9   0.0        5.1    7.8   0.0    5.1  4  Ank_4     Ankyrin repeats (many copies)
     0.0001   22.8   0.0        1.4    9.5   0.0    4.2  3  Ank_2     Ankyrin repeats (3 copies)
    0.00011   22.3   0.1        4.7    8.1   0.0    5.0  4  Ank_3     Ankyrin repeat
    0.00034   20.9   0.8      0.062   13.8   0.1    3.8  4  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0011       5.1      37      55 .]       3      21 ..       1      32 [. 0.69
   2 ?    2.8   0.0     0.041   1.8e+02       2      39 ..     102     153 ..      65     159 .. 0.69
   3 ?    3.8   0.0     0.021        93      16      37 ..     216     236 ..     213     239 .. 0.81
   4 ?    1.9   0.0      0.08   3.6e+02      15      46 ..     257     291 ..     256     295 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
       Ank_4 37 talhiAakrgnveilklLl 55
                talh+A+  gnv+ +k Ll
  CCE29621.1  3 TALHFAVFLGNVRLTKTLL 21
                6666666666666666654 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.041
       Ank_4   2 ltaLhyaai...............sgrlelvrlLlekgadinaqdnrsGetal 39 
                 +++Lh aa+                g+++  r+ +e+gad  a+ ++  +t+l
  CCE29621.1 102 MSILHFAAAdrttdyrqwqclfdgRGCTQGMRIAVESGADKEAR-DGFSRTPL 153
                 45566666655555555555566666666667777777776666.66666665 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.021
       Ank_4  16 lvrlLlekgadinaqdnrsGet 37 
                 l+ +Lle+ adi+ +++r ++t
  CCE29621.1 216 LISFLLEHHADIHGTSDR-QNT 236
                 7889**********9665.444 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.08
       Ank_4  15 elvrlLlekgad..inaqdnrsGet.alhiAakrg 46 
                 el++ Ll+  +d  +n ++++ G++ +l++++++g
  CCE29621.1 257 ELLKELLSDLVDrgLNLTIPAPGLSsPLYRVLRHG 291
                 68888998888899888888889955*****9998 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00032       1.4      55      81 ..       3      29 ..       1      30 [. 0.90
   2 !    5.1   0.0    0.0079        36      28      62 ..      64     110 ..      48     159 .. 0.77
   3 ?    3.2   0.0      0.03   1.3e+02      19      50 ..     185     226 ..     169     312 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00032
       Ank_2 55 tpLhyAarsghleivklLlekgadinl 81
                t+Lh+A++ g+ ++ k Ll+ ga++++
  CCE29621.1  3 TALHFAVFLGNVRLTKTLLDVGASLTI 29
                9******99**********98999875 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0079
       Ank_2  28 taLhyAakngnleivklLleh............adndgrtpLhyAar 62 
                 +++++A  + +  ++k+L+eh            ++ + +++Lh+Aa 
  CCE29621.1  64 FPIFLAFLQSDPGMCKILMEHragreamifdheTNPKVMSILHFAAA 110
                 67888888777888888988776666666444444667778888884 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.03
       Ank_2  19 gadpnkngktaLhyAakn......gnle....ivklLleh.ad 50 
                 ga +n +g ++L +A+++      + +     ++++Lleh ad
  CCE29621.1 185 GASINPEGDSVLVAAVQGyapypvN-RTlmrrLISFLLEHhAD 226
                 4445445666666666652222221.12211135555555533 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0     0.001       4.7       4      29 ..       3      27 ..       2      29 .. 0.90
   2 ?    0.9   0.0      0.23     1e+03       4      23 ..     103     124 ..     102     129 .. 0.70
   3 ?    4.0   0.0     0.023     1e+02      17      30 ..     216     228 ..     205     229 .. 0.83
   4 ?    2.0   0.0     0.098   4.4e+02       4      30 ..     282     310 ..     280     311 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.001
       Ank_3  4 tpLhlAarsgnleivkfLlenkgadv 29
                t+Lh+A+  gn+ + k Ll+  ga +
  CCE29621.1  3 TALHFAVFLGNVRLTKTLLD-VGASL 27
                9*******************.78876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.23
       Ank_3   4 tpLhlAarsgnlei..vkfLle 23 
                 ++Lh+Aa    +++   + L++
  CCE29621.1 103 SILHFAAADRTTDYrqWQCLFD 124
                 89*****988777546666665 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.023
       Ank_3  17 ivkfLlenkgadvn 30 
                 ++ fLle ++ad++
  CCE29621.1 216 LISFLLE-HHADIH 228
                 599****.8***97 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.098
       Ank_3   4 tpLhlAarsgnle...ivkfLlenkgadvn 30 
                 +pL++++r+g  +   + ++L+e kga ++
  CCE29621.1 282 SPLYRVLRHGIAKpewLFDLLCE-KGATIH 310
                 79999999999943468999999.899886 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   1.4e-05     0.062       4      29 ..       3      29 ..       2      31 .. 0.92
   2 ?   -1.9   0.0       1.2   5.4e+03       4      10 ..     103     109 ..     102     122 .. 0.69
   3 ?    2.7   0.0     0.045     2e+02      16      27 ..     215     227 ..     191     232 .. 0.67
   4 ?   -2.3   0.0       1.7   7.4e+03      15      24 ..     260     270 ..     249     275 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
                BHHHHHHHHTTHHHHHHHHT.TTSTTC CS
         Ank  4 TPLHlAatngkkriiklLLh.GAnlna 29
                T+LH A+  g++r +k LL+ GA+l++
  CCE29621.1  3 TALHFAVFLGNVRLTKTLLDvGASLTI 29
                9******************66**9986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
                 BHHHHHH CS
         Ank   4 TPLHlAa 10 
                 + LH Aa
  CCE29621.1 103 SILHFAA 109
                 569*998 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.045
                 HHHHHHH.TTTST CS
         Ank  16 riiklLL.hGAnl 27 
                 r i++LL h A++
  CCE29621.1 215 RLISFLLeHHADI 227
                 59*****999998 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.7
                 HHHHHHHH.TT CS
         Ank  15 kriiklLL.hG 24 
                 k+ +++L+ +G
  CCE29621.1 260 KELLSDLVdRG 270
                 45666677446 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2285.04
//
Query:       CCE29622.1  [L=261]
Description: uncharacterized protein CPUR_03469 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1985.64
//
Query:       CCE29623.1  [L=252]
Description: uncharacterized protein CPUR_03470 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00038   20.1   0.4    0.00079   19.1   0.4    1.6  1  HTH_Tnp_4       Helix-turn-helix of DDE superfamily endonucle
     0.0078   16.3   0.0      0.015   15.4   0.0    1.4  1  Trp_repressor   Trp repressor protein
  ------ inclusion threshold ------
       0.05   13.0   0.4       0.16   11.4   0.1    2.1  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
       0.15   11.9   0.0       0.23   11.3   0.0    1.2  1  Topo-VIb_trans  Topoisomerase VI B subunit, transducer
        1.1    8.7   5.8        1.7    8.1   5.8    1.2  1  Hepatitis_core  Hepatitis core antigen


Domain annotation for each model (and alignments):
>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.4   2.2e-07   0.00079      18      52 ..      56      90 ..      42      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.2e-07
   HTH_Tnp_4 18 lnltyqdLayrFgvsestvsrifhkwvdlLaerlk 52
                ++++y+ ++ rF +s  t++rif++++  La+ l+
  CCE29623.1 56 HHVSYRNVSNRFRMSIATINRIFNEVLVALAHNLS 90
                99*****************************9986 PP

>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.1e-06     0.015      36      72 ..      44      80 ..      37      93 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.1e-06
  Trp_repressor 36 aqRlqvvkeLLkeelsqreIaeelgvSiAtItRvsrs 72
                    q l v+ +++ + +s+r++++   +SiAtI R  ++
     CCE29623.1 44 WQKLMVFLHIIGHHVSYRNVSNRFRMSIATINRIFNE 80
                   5778888889999********************9876 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   4.6e-05      0.16      26      51 ..      56      81 ..      48      82 .. 0.85
   2 ?   -1.9   0.0      0.65   2.3e+03      18      34 ..     189     206 ..     188     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.6e-05
  HTH_Tnp_ISL3 26 esrsvkavArqlgvSwtTVwrildry 51
                  ++ s + v+++++ S  T++ri++++
    CCE29623.1 56 HHVSYRNVSNRFRMSIATINRIFNEV 81
                  558999*****************975 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.65
  HTH_Tnp_ISL3  18 ayilellles.rsvkavA 34 
                   ++il l +++ r+++ vA
    CCE29623.1 189 RQILLLIQRRrRPRARVA 206
                   678888888888888887 PP

>> Topo-VIb_trans  Topoisomerase VI B subunit, transducer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.5e-05      0.23      99     143 ..      45      89 ..      28     105 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.5e-05
  Topo-VIb_trans  99 dpvvvlvhvastkvPfksegKe...aiadveeiekeiklalqevarkL 143
                     ++++v+ h+++ +v +++++     +ia+++ i +e+  al +   +L
      CCE29623.1  45 QKLMVFLHIIGHHVSYRNVSNRfrmSIATINRIFNEVLVALAH---NL 89 
                     589****************975222788888888888777654...44 PP

>> Hepatitis_core  Hepatitis core antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.8   0.00048       1.7     175     251 ..     142     221 ..     135     227 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00048
  Hepatitis_core 175 ekyrgrdapileaitrpiqaaqggrktssgtrkprgleprr.....rkvkttvvygrrrsksrerrapsprrarsqlprsss 251
                     ++ r +  p +e++t+       +r t  g r  +gle  r     r  +  ++  +rr + r r a +p  ++s +p++++
      CCE29623.1 142 KAIRNKGIPWVESLTKQ--VWPDARPTGEGYRGRKGLEASRilarkRPTRQILLLIQRRRRPRARVAITPATQQSTIPKRRH 221
                     56788999999988876..6778999***********97543331155566677789999999999************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2058.62
//
Query:       CCE29624.1  [L=190]
Description: uncharacterized protein CPUR_03471 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1567.32
//
Query:       CCE29625.1  [L=178]
Description: uncharacterized protein CPUR_03472 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-07   28.7   0.1       0.42   10.5   0.0    3.4  3  TPR_1     Tetratricopeptide repeat
    1.8e-05   24.5   0.2        4.1    7.7   0.0    3.3  3  TPR_2     Tetratricopeptide repeat
     0.0004   21.0   0.4     0.0043   17.8   0.6    2.2  2  TPR_14    Tetratricopeptide repeat
     0.0006   20.0   0.2          7    7.0   0.0    3.1  3  TPR_12    Tetratricopeptide repeat
     0.0019   18.8   0.6      0.025   15.2   1.3    2.0  2  TPR_16    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   15.8   0.5       0.69   10.1   0.0    3.0  3  TPR_7     Tetratricopeptide repeat
      0.061   13.0   0.0         20    5.0   0.0    3.0  3  TPR_11    TPR repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0019       4.9      15      28 ..      26      39 ..      20      43 .. 0.89
   2 !    7.3   0.0    0.0017       4.3       7      32 ..      99     124 ..      98     126 .. 0.90
   3 !   10.5   0.0   0.00017      0.42       2      33 ..     128     159 ..     127     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0019
                T-HHHHHHHHHHHH CS
       TPR_1 15 gkydeAleyyekAL 28
                +ky+ Al ++ +A+
  CCE29625.1 26 QKYERALPFFTRAI 39
                69***********8 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0017
                 HHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnP 32 
                 +++ +  +g++d+A  + e  +el P
  CCE29625.1  99 RAASHEAMGRLDDAMNDAEWMVELAP 124
                 7999*************999999988 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 + + +lG + + +++y+ A   y   +e+n++
  CCE29625.1 128 DGYLRLGKVARLQNNYEYAWGMYTTGIEINEE 159
                 78*****************9999999999986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0041        10       8      28 ..      19      39 ..      14      43 .. 0.84
   2 !    7.7   0.0    0.0016       4.1       3      25 ..      95     117 ..      93     126 .. 0.81
   3 !    6.9   0.1     0.003       7.7       2      20 ..     128     146 ..     127     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0041
       TPR_2  8 GlayyklgdyeeAleafekAl 28
                G+ + + ++ye+Al +f +A+
  CCE29625.1 19 GRHCCAIQKYERALPFFTRAI 39
                67777889***********98 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0016
       TPR_2   3 alynlGlayyklgdyeeAleafe 25 
                 al  ++ +++++g++++A ++ e
  CCE29625.1  95 ALDLRAASHEAMGRLDDAMNDAE 117
                 7889**************99877 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.003
       TPR_2   2 ealynlGlayyklgdyeeA 20 
                 +++ +lG++++ +++ye A
  CCE29625.1 128 DGYLRLGKVARLQNNYEYA 146
                 7899************977 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.65   1.7e+03      15      35 ..      26      46 ..      15      54 .. 0.71
   2 !   17.8   0.6   1.7e-06    0.0043       3      43 ..      95     135 ..      93     136 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.65
      TPR_14 15 GdpdeAiallrralalaPdda 35
                +++++A+  + ra+  +P  +
  CCE29625.1 26 QKYERALPFFTRAIGSCPCTR 46
                567888888888887777555 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.7e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 al ++a+ ++a G++d+A++ ++++++laP  ++ +l+l++
  CCE29625.1  95 ALDLRAASHEAMGRLDDAMNDAEWMVELAPRLPDGYLRLGK 135
                 67889*********************************997 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.016        40      52      72 ..      19      39 ..      14      42 .. 0.70
   2 !    7.0   0.0    0.0027         7      39      70 ..      87     118 ..      83     125 .. 0.83
   3 ?    5.1   0.0     0.011        27      48      76 ..     130     158 ..     128     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.016
      TPR_12 52 grlyralgryeeAlelleeal 72
                gr + a  +ye Al ++++a+
  CCE29625.1 19 GRHCCAIQKYERALPFFTRAI 39
                556666677888888877775 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0027
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlellee 70 
                 +d+p+ + +l   +  ++a+gr+++A +  e 
  CCE29625.1  87 CDNPYHILALDLRAASHEAMGRLDDAMNDAEW 118
                 6899999******************9876665 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.011
      TPR_12  48 lrnLgrlyralgryeeAlelleealaiae 76 
                 +  Lg + r++++ye A+ +++  ++i e
  CCE29625.1 130 YLRLGKVARLQNNYEYAWGMYTTGIEINE 158
                 6789*****************99999876 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.35   9.1e+02      49      62 ..      27      40 ..      19      43 .. 0.59
   2 !   15.2   1.3   9.9e-06     0.025       4      51 ..     100     144 ..      98     146 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.35
      TPR_16 49 rlaeAaalyraalr 62
                 +++A+ ++ +a++
  CCE29625.1 27 KYERALPFFTRAIG 40
                35555555555554 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 9.9e-06
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrla 51 
                 a ++ + g+ ddA + +e+ ++++   P+ ++ +l lg +a  q++++
  CCE29625.1 100 AASHEAMGRLDDAMNDAEWMVELA---PRLPDGYLRLGKVARLQNNYE 144
                 6788899*****************...99999************9997 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00027      0.69       6      26 ..      19      39 ..      15      43 .. 0.86
   2 ?    0.3   0.1      0.35     9e+02       1      18 [.      95     112 ..      95     114 .. 0.82
   3 ?    1.5   0.1      0.15   3.9e+02       2      22 ..     130     150 ..     130     160 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00027
       TPR_7  6 arlysrlGdyeeAielyeqsL 26
                +r +++ ++ye+A+ ++++++
  CCE29625.1 19 GRHCCAIQKYERALPFFTRAI 39
                8899***************43 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.35
       TPR_7   1 aLlnLarlysrlGdyeeA 18 
                 aL+  a  ++++G+ ++A
  CCE29625.1  95 ALDLRAASHEAMGRLDDA 112
                 5777788999****9999 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.15
       TPR_7   2 LlnLarlysrlGdyeeAiely 22 
                 +l+L+ + + +++ye A + y
  CCE29625.1 130 YLRLGKVARLQNNYEYAWGMY 150
                 689999999999999665555 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0078        20       4      21 ..      15      32 ..      13      34 .. 0.84
   2 ?    4.6   0.0      0.01        26      21      37 ..     120     136 ..     105     140 .. 0.83
   3 ?   -0.1   0.0       0.3   7.8e+02       1      26 [.     134     159 ..     134     161 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0078
      TPR_11  4 yyeqGkyeeAieaYkkAl 21
                + + G+   Ai++Y++Al
  CCE29625.1 15 LIQSGRHCCAIQKYERAL 32
                678888888********8 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.01
      TPR_11  21 lkldPdnaeayynLGla 37 
                 ++l P  ++ y+ LG++
  CCE29625.1 120 VELAPRLPDGYLRLGKV 136
                 6899***********97 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.3
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPd 26 
                 G++ + q++ye A   Y + ++++++
  CCE29625.1 134 GKVARLQNNYEYAWGMYTTGIEINEE 159
                 56667899999998888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1396.75
//
Query:       CCE29626.1  [L=147]
Description: uncharacterized protein CPUR_03473 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1118.47
//
Query:       CCE29627.1  [L=134]
Description: uncharacterized protein CPUR_03474 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-06   25.9   0.4      0.022   14.8   0.2    2.3  2  TPR_2     Tetratricopeptide repeat
    3.6e-05   23.4   0.4      0.028   14.2   0.1    2.4  2  TPR_1     Tetratricopeptide repeat
    0.00049   20.7   0.5      0.094   13.6   0.4    2.3  2  TPR_14    Tetratricopeptide repeat
    0.00076   19.5   0.2      0.074   13.3   0.1    2.4  2  TPR_8     Tetratricopeptide repeat
     0.0016   18.7   0.8       0.14   12.4   0.2    2.2  2  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   16.2   0.2        7.2    7.3   0.1    2.2  2  TPR_16    Tetratricopeptide repeat
       0.18   10.7   0.1       0.28   10.0   0.1    1.3  1  DUF2791   P-loop Domain of unknown function (DUF2791)


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00055       1.4       9      32 ..      21      44 ..      16      44 .. 0.84
   2 !   14.8   0.2   8.6e-06     0.022       2      34 .]      95     127 ..      94     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00055
       TPR_2  9 layyklgdyeeAleafekAleldP 32
                +   ++++ye Al+ f +A++ +P
  CCE29627.1 21 RDSHEAKEYELALAVFTRAIRSCP 44
                5566889*************9877 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 8.6e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 eal  ++  y++l++++ A ++ e+ le +P++
  CCE29627.1  95 EALDSRAATYEALNKLDHAMADAERILEMAPRH 127
                 78999**************************86 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0019       4.8      14      29 ..      26      41 ..      24      44 .. 0.86
   2 !   14.2   0.1   1.1e-05     0.028       7      34 .]     100     127 ..      95     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0019
                TT-HHHHHHHHHHHHH CS
       TPR_1 14 lgkydeAleyyekALe 29
                 ++y+ Al+ + +A++
  CCE29627.1 26 AKEYELALAVFTRAIR 41
                689***********97 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.1e-05
                 HHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPnn 34 
                 ++++y  l+k+d A ++ e+ Le  P +
  CCE29627.1 100 RAATYEALNKLDHAMADAERILEMAPRH 127
                 899*********************9975 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.018        46      14      37 ..      26      49 ..      16      54 .. 0.86
   2 !   13.6   0.4   3.7e-05     0.094       2      36 ..      95     129 ..      94     133 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.018
      TPR_14 14 lGdpdeAiallrralalaPddaea 37
                + +++ A+a++ ra++ +P + ++
  CCE29627.1 26 AKEYELALAVFTRAIRSCPCSSRV 49
                678999**********99977665 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.7e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddae 36 
                 eal  +a+ ++al ++d A+a ++r+l+ aP +++
  CCE29627.1  95 EALDSRAATYEALNKLDHAMADAERILEMAPRHPD 129
                 78999***********************9999876 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.025        63      14      31 ..      26      43 ..      22      44 .. 0.84
   2 !   13.3   0.1   2.9e-05     0.074       3      33 ..      96     126 ..      94     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.025
                TT-HHHHHHHHHHHHHHH CS
       TPR_8 14 lgdyeeAkeyyekaleld 31
                 ++ye A +++ +a++  
  CCE29627.1 26 AKEYELALAVFTRAIRSC 43
                5899**********9865 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 a+   + +y+ l++++ A++  e+ le++p 
  CCE29627.1  96 ALDSRAATYEALNKLDHAMADAERILEMAPR 126
                 55667889*********************97 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.012        31      53      74 ..      21      42 ..      10      44 .. 0.76
   2 !   12.4   0.2   5.5e-05      0.14      38      76 ..      87     125 ..      83     126 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.012
      TPR_12 53 rlyralgryeeAlelleealai 74
                r  +++++ye Al+ +++a++ 
  CCE29627.1 21 RDSHEAKEYELALAVFTRAIRS 42
                5556788999999999999875 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.5e-05
      TPR_12  38 GpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 ++++ + +++l   + +y+al++++ A +  e+ l++a+
  CCE29627.1  87 ECNNVYHIEALDSRAATYEALNKLDHAMADAERILEMAP 125
                 57888999****************************986 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0042        11      10      26 ..      26      42 ..      20      45 .. 0.76
   2 ?    7.3   0.1    0.0028       7.2       4      32 ..     101     129 ..      99     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0042
      TPR_16 10 agdyddAaaaleaalkr 26
                a++y+ A+a++++a+++
  CCE29627.1 26 AKEYELALAVFTRAIRS 42
                67788888888888775 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0028
      TPR_16   4 araalragdyddAaaaleaalkrdpssPd 32 
                 a  + ++++ d A a +e+ l+++p++Pd
  CCE29627.1 101 AATYEALNKLDHAMADAERILEMAPRHPD 129
                 667889999***************77776 PP

>> DUF2791  P-loop Domain of unknown function (DUF2791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00011      0.28     245     271 ..      85     111 ..      83     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
     DUF2791 245 lDElvnlyklsnsdaReknyekllqil 271
                 +DE+ n+y+++  d+R + ye+l ++ 
  CCE29627.1  85 FDECNNVYHIEALDSRAATYEALNKLD 111
                 8*********************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1032.87
//
Query:       CCE29628.1  [L=104]
Description: uncharacterized protein CPUR_03475 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 767.45
//
Query:       CCE29629.1  [L=470]
Description: uncharacterized protein CPUR_03476 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-13   48.3  41.0    6.7e-13   48.3  41.0    1.8  2  MFS_1      Major Facilitator Superfamily
    9.1e-09   35.2   4.8    9.1e-09   35.2   4.8    2.3  2  UNC-93     Ion channel regulatory protein UNC-93
  ------ inclusion threshold ------
       0.38   11.5   0.1       0.38   11.5   0.1    4.7  5  PrgI       PrgI family protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3  41.0   1.1e-16   6.7e-13       5     352 ..      24     395 ..      20     396 .. 0.73
   2 ?    1.4   4.4      0.02   1.2e+02      87     176 ..     348     432 ..     327     445 .. 0.66

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.1e-16
       MFS_1   5 aflsalarsilgpalpl...alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa....sslwlllvlrvlqG 96 
                 +f+++++ ++++++  l    + +d ++s  + + l+++++    ++ +++G++ + +G+r++l lg +++al  l  l++     + w+++++  + G
  CCE29629.1  24 GFVAFCSVGMFSAISNLgagGM-SDVQLSDIANSVLYGMFF----LGGFFGGSVNNILGPRPTLSLGTTGYALY-LGSLWCyqrnGTRWFVIFAGGVLG 116
                 4555555555444443200133.445555555555555555....599999***********************.555554448655669********* PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee... 188
                 l a+++++a +a++  +  ++++gra+ l+ + f+ G++lg++++  +  +        +v++++ i++l +  l+  +l+ +p    r  ++  +   
  CCE29629.1 117 LSAALFWAAQGAIMMSYPLEKDKGRAFTLFWSIFQTGTVLGAAIALGIDFHSDspgvSNGVYVAFMIIMLTS--LATSWLVLPPEVVVRGDGVIVKlpe 213
                 **********************************************88844445778777788888888888..5567777777666666666665566 PP

       MFS_1 189 kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrrlllallllll 286
                 + t  +++++ +  ++kd      +ial+ +ff  ++l+++   ++ + ++      l++ll +l++++g   ++l+g++ d l+ +rr     +++++
  CCE29629.1 214 SLTPTQEFRE-FLGMFKDW----RMIALFPMFFSSNYLYAYQGAITAFLFNGRtR-ALVALLTGLGSILG---SILIGFVTDNLPFHRRKRALWSCTFV 303
                 7777777777.88899999....99999999999999999999976777777742.66666688888888...999*******8888888888888888 PP

       MFS_1 287 aalglallavt............................ssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 ++l+++++a                              + +++ll++++++    +g+++ ++ ++++d +   + ++++g++ +++s+g+a++
  CCE29629.1 304 TFLMCLVWAGGlgfqtkfvreqrvvlgevcpwdwtvgvaTGPIILLFAYYVVDAaYQGLAYYTMSSITNDPF---RLARMAGYYKSIQSAGAAVS 395
                 888888888887999999999999999866665444443333333334444555555555555555555555...89999999999999999875 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.02
       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                 ll++  v+ ++ +g+++ ++ +++ d f   + +r+ g++ +  s+Ga++  +  ++ +++lg  ++ ++l++vsl ++ l  +l+ +++
  CCE29629.1 348 LLFAYYVVDAAYQGLAYYTMSSITNDPF---RLARMAGYYKSIQSAGAAVSFGMDAVRTAYLGEALISWLLTLVSLPLCAL--VLYHVSD 432
                 4444444444444555555555555544...66888888889999999999999998888888888888888888888555..6665544 PP

>> UNC-93  Ion channel regulatory protein UNC-93
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   4.8   1.5e-12   9.1e-09      42     145 ..      54     161 ..      25     172 .. 0.89
   2 ?   -2.5   0.3      0.61   3.6e+03      88     114 ..     242     265 ..     230     270 .. 0.60

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.5e-12
      UNC-93  42 slaiiyavftvanlvapsvvdlltakwalvigallyaifqlgFlll..n..kyylyissallGvgaallwtgqGsyLsenstretiernssilwallks 136
                 + +++y +f +  ++  sv ++l+++ +l +g++ ya++  +      n  ++++ ++  +lG++aal+w++qG  +++   ++  +r  +++w+++++
  CCE29629.1  54 ANSVLYGMFFLGGFFGGSVNNILGPRPTLSLGTTGYALYLGSLWCYqrNgtRWFVIFAGGVLGLSAALFWAAQGAIMMSYPLEKDKGRAFTLFWSIFQT 152
                 5689**********************************98665433123447*********************************************** PP

      UNC-93 137 slliGgifl 145
                   ++G+ + 
  CCE29629.1 153 GTVLGAAIA 161
                 999998654 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.61
      UNC-93  88 nkyylyissallGvgaallwtgqGsyL 114
                  + yly   a  G+ +a+l++g+ + L
  CCE29629.1 242 SSNYLY---AYQGAITAFLFNGRTRAL 265
                 333333...445777788887776655 PP

>> PrgI  PrgI family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.6      0.34     2e+03      22      43 ..     107     129 ..     103     137 .. 0.65
   2 ?   -1.2   0.7      0.57   3.4e+03      47      57 ..     177     187 ..     147     241 .. 0.59
   3 ?   -0.3   0.2      0.29   1.8e+03      33      74 ..     252     293 ..     232     305 .. 0.62
   4 ?   -1.4   0.6      0.65   3.9e+03      54      54 ..     303     303 ..     256     368 .. 0.63
   5 ?   11.5   0.1   6.4e-05      0.38      28      72 ..     391     436 ..     387     448 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.34
        PrgI  22 liflvlall.vaiglylllrafl 43 
                 ++++++++l ++++l+++ ++++
  CCE29629.1 107 FVIFAGGVLgLSAALFWAAQGAI 129
                 55555555537888888877777 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.57
        PrgI  47 asvlvillavP 57 
                   v+++++++ 
  CCE29629.1 177 VYVAFMIIMLT 187
                 22222222222 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.29
        PrgI  33 iglylllrafleelasvlvill....avPvaalgfykkdglpleky 74 
                 +++++l+++ +    +++++l+    ++  +++gf+  d+lp+ + 
  CCE29629.1 252 AITAFLFNGRT---RALVALLTglgsILGSILIGFV-TDNLPFHRR 293
                 44455555555...3344444433446667888888.577777665 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.65
        PrgI  54 l 54 
                 +
  CCE29629.1 303 V 303
                 2 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 6.4e-05
        PrgI  28 allvaiglylllrafl.eelasvlvillavPvaalgfykkdglple 72 
                 +++v++g+  +  a+l e l s+l++l+++P++al++y++++ ++e
  CCE29629.1 391 GAAVSFGMDAVRTAYLgEALISWLLTLVSLPLCALVLYHVSDTNYE 436
                 455566666666666677778*****************87776644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3439.51
//
Query:       CCE29630.1  [L=90]
Description: uncharacterized protein CPUR_03477 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 692.21
//
Query:       CCE29631.1  [L=112]
Description: uncharacterized protein CPUR_03478 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.026   15.0   0.4      0.045   14.2   0.2    1.5  1  Na_Ca_ex_C  C-terminal extension of sodium/calcium exchanger 
      0.041   14.3   0.2        0.1   13.0   0.1    1.6  2  AvrM-A      Flax-rust effector AvrM-A
      0.097   13.2   0.5       0.34   11.4   0.1    1.9  2  Spectrin    Spectrin repeat


Domain annotation for each model (and alignments):
>> Na_Ca_ex_C  C-terminal extension of sodium/calcium exchanger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   7.6e-06     0.045      59      87 ..       5      34 ..       1      47 [. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.6e-06
  Na_Ca_ex_C 59 esr.kevirilkelkqkyPdkdleqleela 87
                ++r +e ++ l+elk+ +P+ dl+  ++ +
  CCE29631.1  5 QERiDERVSELRELKKTHPEIDLDAFVSAL 34
                56669999****************987654 PP

>> AvrM-A  Flax-rust effector AvrM-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.34     2e+03     107     135 ..       5      33 ..       2      39 .. 0.71
   2 ?   13.0   0.1   1.7e-05       0.1      26      82 ..      43     102 ..      34     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.34
      AvrM-A 107 deelkkavvalKelEKsvrnakneAlrsA 135
                 +e + + v++l+el K+  + + +A+ sA
  CCE29631.1   5 QERIDERVSELRELKKTHPEIDLDAFVSA 33 
                 55667777888888887777777766665 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.7e-05
      AvrM-A  26 kvarklaq..WeaaEkrlddllkelykkqllefkk.kkgekklkkkidviaeklkekaka 82 
                 +v+ kl++  W ++ + l+ l k++++ +l ++k+  +g k l++k+d i +++ ++  a
  CCE29631.1  43 DVKEKLGDetWDKMNESLAGLTKDSLPDDLAKAKSyLQGHKDLEEKFDAIYSNMGPETVA 102
                 4566665444**********************966269***************9887765 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.26   1.6e+03      76      94 ..       6      17 ..       2      26 .. 0.51
   2 ?   11.4   0.1   5.8e-05      0.34      15      52 ..      54      91 ..      46      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.26
                HHHHHHHHHHHHHHHHHHH CS
    Spectrin 76 eeieerleelnerWeeLke 94
                e+i er++e       L+e
  CCE29631.1  6 ERIDERVSE-------LRE 17
                333333333.......333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.8e-05
                HHHHHHHHHHCCSSCSSSHHHHHHHHHHHHHHHHHHHH CS
    Spectrin 15 eWieekeellssedlgkdleevqallkkhkaleaelaa 52
                + ++e  + l+++ l+ dl+++++ l+ hk+le+ ++a
  CCE29631.1 54 DKMNESLAGLTKDSLPDDLAKAKSYLQGHKDLEEKFDA 91
                568888888999*********************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 875.68
//
Query:       CCE29632.1  [L=651]
Description: related to serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-19   68.8   0.0      4e-18   66.1   0.0    2.2  3  Pro-kuma_activ  Pro-kumamolisin, activation domain
    2.1e-05   23.9   0.3    3.6e-05   23.2   0.3    1.3  1  Peptidase_S8    Subtilase family


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   4.5e-22     4e-18      17     137 ..      53     171 ..      37     179 .. 0.89
   2 ?   -1.8   0.0      0.39   3.5e+03     115     130 ..     208     223 ..     202     239 .. 0.86
   3 ?   -2.0   0.0      0.46   4.1e+03      53      73 ..     498     518 ..     495     521 .. 0.85

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 4.5e-22
  Pro-kuma_activ  17 vrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLessgiaasrhsdtkgwiafsatvaqverllktsfeaYshk 111
                     +++++++  +e+  ++l+d+sd  s ++ +h+t+ ev++lfa++  ++d V++wL++s i  s  + + + + +++t++ +e+ll+t++ + s  
      CCE29632.1  53 LSLAIAPGVVESAAAALHDISDARSGRFAQHWTPREVHRLFASEARQVDDVTRWLQESRIVMSWWELDMDHLLLDMTARDAEKLLRTRLRQCS-- 145
                     44555777789**********************************************************************************.. PP

  Pro-kuma_activ 112 kgssslarcdeyslPealknyvdyih 137
                     +g ++ + +++y++Pe ++ ++d+i+
      CCE29632.1 146 RGTRTDICSETYHVPETISHHIDHIT 171
                     68899999999*************93 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.39
  Pro-kuma_activ 115 sslarcdeyslPealk 130
                     s  ++c +y +Pe+l+
      CCE29632.1 208 SRQVNCFKYATPECLR 223
                     56789*********97 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.46
  Pro-kuma_activ  53 vaelfapseeaidaVrnwLes 73 
                     + +lf + + +++aV ++L++
      CCE29632.1 498 FSRLFPAPQYQTEAVASYLQN 518
                     67788888999********97 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.3     4e-09   3.6e-05     120     264 ..     369     582 ..     328     591 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4e-09
                   CT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CC.T-EEEEE--SS-T-HH..........EEE-TTCEEC....TTTSTTCEEEEEES....... CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx..........xxxxxxxxxx....xxxxxxxxxxxxxx....... RF
  Peptidase_S8 120 dkvdvinmslgestslpktgrsiealainravnkk.gvlvviSaGNngktgs..........slqagspvgt....pstsknvitvgayt....... 194
                   + + vi++s+  + + + + r ++  +i+ ++    gv v +++G  g+  s          +++++ ++ +    p+++  v++vg+++       
    CCE29632.1 369 QPPLVISISWA-EPEASLPARYVQRQCIEFLKLGLqGVTVLAASGDTGPASSqgtcidwesgTTNTSTTGRFspnfPASCPWVTAVGGTQldaenrt 464
                   44559999999.444455555555557777776666************9999999999888633333333335555888899*************** PP

                   ........................................................TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHH CS
                   ........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 ........................................................tegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnns 235
                                                                           + g++a  S                                
    CCE29632.1 465 wtpgaafppetafmwqtkepngsiavvgssgggfsrlfpapqyqteavasylqnesQRGHLANLS-------------------------------- 529
                   *******************7777777777777777777777777666666655555333333333................................ PP

                   TTTHH............................EEEE-SHHHCHHHHHHHHHHHHHH CS
                   xxxxx............................xxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 236 aglss............................yqsmsGTSmAsPnaagaaAlllsa 264
                       +                            + ++ GTS+A+P++a+++A + +a
    CCE29632.1 530 ----QagyfdargrgypdvsvtangylmyvlgtLHQVLGTSAATPVVAAMVARINDA 582
                   ....133333333333333333333333344448889***************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4970.50
//
Query:       CCE29633.1  [L=70]
Description: uncharacterized protein CPUR_03480 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 501.11
//
Query:       CCE29634.1  [L=71]
Description: uncharacterized protein CPUR_03481 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 578.54
//
Query:       CCE29635.1  [L=94]
Description: uncharacterized protein CPUR_03482 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.027   14.4   1.2      0.036   14.1   1.2    1.2  1  PepSY_2   Peptidase propeptide and YPEB domain
        5.3    6.5   5.9         23    4.4   5.9    1.8  1  nec1      Virulence protein nec1


Domain annotation for each model (and alignments):
>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.2     4e-06     0.036       3      40 ..       8      45 ..       6      51 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4e-06
     PepSY_2  3 alalalallaaaAlAgrrdtdspkadwlpreklvakle 40
                 l ++++lla  A+A++ ++ +p+++   r+++ a+++
  CCE29635.1  8 VLSAVAVLLANQAVAAPGQDVTPRDEVSARAEMAAMIA 45
                678999*********99999999999999999999987 PP

>> nec1  Virulence protein nec1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   5.9    0.0026        23      61      89 ..      50      78 ..       1      82 [. 0.60

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0026
        nec1 61 gycdtnyqcaggsgsssrwsvnfddgptv 89
                  c+   +c+   gss r+  nf d   v
  CCE29635.1 50 FACNCPNNCSHKEGSSCRYYKNFSDSGPV 78
                2378888999*************885444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 749.14
//
Query:       CCE29636.1  [L=273]
Description: uncharacterized protein CPUR_03483 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-09   36.6   0.0    0.00016   22.2   0.0    3.9  5  Ank_2     Ankyrin repeats (3 copies)
    1.9e-06   27.7   1.1        5.8    7.8   0.0    5.3  5  Ank_3     Ankyrin repeat
    1.4e-05   25.6   1.7         13    6.5   0.0    4.8  5  Ank_4     Ankyrin repeats (many copies)
    2.2e-05   24.7   0.8        1.6    9.3   0.1    4.9  6  Ank       Ankyrin repeat
    0.00023   21.4   0.5       0.88   10.0   0.0    4.4  5  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0037        13      53      81 ..      16      44 ..       5      46 .. 0.80
   2 !   10.7   0.0   0.00017       0.6      27      62 ..      80     127 ..      58     140 .. 0.76
   3 !   22.2   0.0   4.3e-08   0.00016       3      82 ..      85     185 ..      83     186 .. 0.74
   4 !   14.0   0.0   1.7e-05     0.059       1      65 [.     122     200 ..     122     206 .. 0.60
   5 ?    1.6   0.0      0.12   4.2e+02      38      80 ..     214     268 ..     200     270 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0037
       Ank_2 53 grtpLhyAarsghleivklLlekgadinl 81
                  t+Lh+A+   + ++ k Ll+ +a+i++
  CCE29636.1 16 ASTALHFAVVIRNVRLTKTLLDMKANITI 44
                56999999988999999999977788875 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00017
       Ank_2  27 ktaLhyAakngnleivklLleh............adndgrtpLhyAar 62 
                  +++++A  +++ +++klL+eh            +d++ +++Lh+Aa 
  CCE29636.1  80 AFPMFLAFLQNDADTCKLLVEHgagreamiidsdTDSNVMSILHFAAA 127
                 578999999999999999999888888888664444667799999995 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 4.3e-08
       Ank_2   3 lAakngnlelvklLl.eg.........adpnk...ngktaLhyAakngnlei..vklLleh.........adndgrtpLhyAarsghleivklLlekga 77 
                 lA ++++ +++klL+ +g         +   +   n +++Lh+Aa     ++   + L +           +++  tpLh+A  s+ ++ +++ +e  a
  CCE29636.1  85 LAFLQNDADTCKLLVeHGagreamiidS---DtdsNVMSILHFAAADPTADCrqWQCLFDRfreyidepgPRRYKLTPLHVALMSNCIQGMQIVVETRA 180
                 555667789******8554455555332...134588*********98889976688998445564444444999********************9999 PP

       Ank_2  78 dinlk 82 
                 d++++
  CCE29636.1 181 DKEAR 185
                 99876 PP

  == domain 4  score: 14.0 bits;  conditional E-value: 1.7e-05
       Ank_2   1 LhlAakngnlelvklLl....eg...adpnk..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsgh 65 
                 Lh+Aa +   ++ ++      +     +p+    ++t+Lh+A ++++++ +++ +e        ++  +tpL + +  gh
  CCE29636.1 122 LHFAAADPTADCRQWQClfdrFReyiDEPGPrrYKLTPLHVALMSNCIQGMQIVVETradkeaRNSASHTPLSMGI-MGH 200
                 5666666544555555323331112122221457799999999999888899999855444533366889998877.465 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.12
       Ank_2  38 nleivklLleh...adndgrtpLhyAars..g.......hleivklLlekgadin 80 
                 ++ +++ +++    ++ +g + L +A+++            +++ +Lle+ +din
  CCE29636.1 214 HTRCLRKFVDLggsVNPEGDSSLGIAVQHyaRfpvdnplMRQVIYFLLEHHVDIN 268
                 5566666666455677888888888887654133333443466667777777776 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0043        15       4      29 ..      18      42 ..      16      44 .. 0.91
   2 ?    2.0   0.0      0.13   4.5e+02       6      27 ..      83     103 ..      81     106 .. 0.79
   3 ?   -0.0   0.0      0.58   2.1e+03       4      12 ..     120     128 ..     119     144 .. 0.81
   4 !    7.8   0.0    0.0016       5.8       3      16 ..     157     170 ..     155     181 .. 0.79
   5 ?    4.4   0.0     0.021        74      17      30 ..     256     268 ..     245     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0043
       Ank_3  4 tpLhlAarsgnleivkfLlenkgadv 29
                t+Lh+A+   n+ + k Ll+ + a++
  CCE29636.1 18 TALHFAVVIRNVRLTKTLLD-MKANI 42
                9*******************.99987 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.13
       Ank_3   6 LhlAarsgnleivkfLlenkga 27 
                 ++lA ++++ + +k+L+e +ga
  CCE29636.1  83 MFLAFLQNDADTCKLLVE-HGA 103
                 666667788888******.787 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.58
       Ank_3   4 tpLhlAars 12 
                 ++Lh+Aa  
  CCE29636.1 120 SILHFAAAD 128
                 79***9976 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0016
       Ank_3   3 etpLhlAarsgnle 16 
                  tpLh+A++s+++ 
  CCE29636.1 157 LTPLHVALMSNCIQ 170
                 7**********985 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.021
       Ank_3  17 ivkfLlenkgadvn 30 
                 ++ fLle +++d+n
  CCE29636.1 256 VIYFLLE-HHVDIN 268
                 7999***.9****9 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0036        13      37      55 .]      18      36 ..      12      68 .. 0.72
   2 !    6.1   0.1    0.0048        17       5      43 ..      83     126 ..      82     128 .. 0.78
   3 !    5.7   0.0    0.0067        24       2      39 ..     157     193 ..     154     204 .. 0.78
   4 ?   -2.2   0.0       1.9   6.9e+03      32      45 ..     229     242 ..     213     242 .. 0.70
   5 ?    2.2   0.0     0.078   2.8e+02      19      30 ..     259     270 ..     255     273 .] 0.87

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0036
       Ank_4 37 talhiAakrgnveilklLl 55
                talh+A+ + nv+ +k Ll
  CCE29636.1 18 TALHFAVVIRNVRLTKTLL 36
                5556665555555555554 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0048
       Ank_4   5 LhyaaisgrlelvrlLlekgad.....inaqdnrsGetalhiAa 43 
                 ++ a+ +++ ++++lL+e+ga      i+  ++++ ++ lh+Aa
  CCE29636.1  83 MFLAFLQNDADTCKLLVEHGAGreamiIDSDTDSNVMSILHFAA 126
                 67788889999********9766666555557888899999997 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0067
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetal 39 
                 lt+Lh a +s++++  ++ +e++ad  a+ n+   t+l
  CCE29636.1 157 LTPLHVALMSNCIQGMQIVVETRADKEAR-NSASHTPL 193
                 68999999999999999999998886666.66666666 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.9
       Ank_4  32 nrsGetalhiAakr 45 
                 n +G++ l iA+++
  CCE29636.1 229 NPEGDSSLGIAVQH 242
                 44689999999876 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.078
       Ank_4  19 lLlekgadinaq 30 
                 +Lle+ +din+ 
  CCE29636.1 259 FLLEHHVDINRP 270
                 79********96 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00044       1.6       4      29 ..      18      44 ..      17      46 .. 0.88
   2 ?    2.0   0.0     0.089   3.2e+02      13      25 ..      90     103 ..      79     108 .. 0.85
   3 ?   -1.7   0.0       1.3   4.7e+03       5      10 ..     121     126 ..     119     138 .. 0.67
   4 !    6.2   0.0    0.0044        16       4      19 ..     158     170 ..     155     187 .. 0.80
   5 ?   -2.5   0.0       2.4   8.6e+03      12      22 ..     212     222 ..     190     230 .. 0.50
   6 ?    0.3   0.0      0.32   1.1e+03      12      28 ..     254     268 ..     238     270 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00044
                BHHHHHHHHTTHHHHHHHHT.TTSTTC CS
         Ank  4 TPLHlAatngkkriiklLLh.GAnlna 29
                T+LH A+ + ++r +k LL+  An+++
  CCE29636.1 18 TALHFAVVIRNVRLTKTLLDmKANITI 44
                9******9***********43799975 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.089
                 TTHHHHHHHH.TTT CS
         Ank  13 gkkriiklLL.hGA 25 
                 ++++ +klL+ hGA
  CCE29636.1  90 NDADTCKLLVeHGA 103
                 45789*******98 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
                 HHHHHH CS
         Ank   5 PLHlAa 10 
                  LH Aa
  CCE29636.1 121 ILHFAA 126
                 589887 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0044
                 BHHHHHHHHTTHHHHH CS
         Ank   4 TPLHlAatngkkriik 19 
                 TPLH+A + +   +i+
  CCE29636.1 158 TPLHVALMSN---CIQ 170
                 *****98777...665 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 2.4
                 HTTHHHHHHHH CS
         Ank  12 ngkkriiklLL 22 
                 ++++r+++ ++
  CCE29636.1 212 EKHTRCLRKFV 222
                 34466666555 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.32
                 HTTHHHHHHHH.TTTSTT CS
         Ank  12 ngkkriiklLL.hGAnln 28 
                 +   ++i +LL h  ++n
  CCE29636.1 254 R---QVIYFLLeHHVDIN 268
                 4...49999999888888 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.017        60      12      46 ..       9      46 ..       2      50 .. 0.75
   2 ?   -0.9   0.0      0.61   2.2e+03      22      40 ..      85     103 ..      78     107 .. 0.76
   3 ?    0.8   0.0      0.18   6.6e+02      12      27 ..     114     129 ..     109     136 .. 0.71
   4 !   10.0   0.0   0.00025      0.88      13      53 ..     153     193 ..     150     195 .. 0.93
   5 ?   -1.2   0.0      0.77   2.8e+03      33      43 ..     257     268 ..     256     270 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.017
       Ank_5 12 ldgggn...tpLhvAakygaadvvrlLlargadlnltd 46
                ++g+ +   t+Lh+A+  ++ ++ + Ll++ a++++ +
  CCE29636.1  9 WNGDLYeasTALHFAVVIRNVRLTKTLLDMKANITIPC 46
                555555666******99999999999998888877765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.61
       Ank_5  22 vAakygaadvvrlLlarga 40 
                 +A  ++ ad ++lL+++ga
  CCE29636.1  85 LAFLQNDADTCKLLVEHGA 103
                 5777888888888888887 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.18
       Ank_5  12 ldgggntpLhvAakyg 27 
                 +d + +++Lh+Aa   
  CCE29636.1 114 TDSNVMSILHFAAADP 129
                 44555699****9765 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00025
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 ++++ tpLhvA   ++ + +++ ++ +ad  +++s   t+l
  CCE29636.1 153 RRYKLTPLHVALMSNCIQGMQIVVETRADKEARNSASHTPL 193
                 67889*******************************9*998 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.77
       Ank_5  33 rlLl.argadln 43 
                 +++l ++++d+n
  CCE29636.1 257 IYFLlEHHVDIN 268
                 566668888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2029.80
//
Query:       CCE29637.1  [L=178]
Description: uncharacterized protein CPUR_03484 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-07   28.7   0.1       0.42   10.5   0.0    3.4  3  TPR_1     Tetratricopeptide repeat
    1.8e-05   24.5   0.2        4.1    7.7   0.0    3.3  3  TPR_2     Tetratricopeptide repeat
     0.0004   21.0   0.4     0.0043   17.8   0.6    2.2  2  TPR_14    Tetratricopeptide repeat
     0.0006   20.1   0.2          7    7.0   0.0    3.1  3  TPR_12    Tetratricopeptide repeat
     0.0019   18.8   0.6      0.025   15.2   1.3    2.0  2  TPR_16    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   15.8   0.5       0.69   10.1   0.0    3.0  3  TPR_7     Tetratricopeptide repeat
      0.061   13.0   0.0         20    5.0   0.0    3.0  3  TPR_11    TPR repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0019       4.9      15      28 ..      26      39 ..      20      43 .. 0.89
   2 !    7.3   0.0    0.0017       4.3       7      32 ..      99     124 ..      98     126 .. 0.90
   3 !   10.5   0.0   0.00017      0.42       2      33 ..     128     159 ..     127     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0019
                T-HHHHHHHHHHHH CS
       TPR_1 15 gkydeAleyyekAL 28
                +ky+ Al ++ +A+
  CCE29637.1 26 QKYERALPFFTRAI 39
                69***********8 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0017
                 HHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnP 32 
                 +++ +  +g++d+A  + e  +el P
  CCE29637.1  99 RAASHEAMGRLDDAMNDAEWMVELAP 124
                 7999*************999999988 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 + + +lG + + +++y+ A   y   +e+n++
  CCE29637.1 128 DGYLRLGKVARLQNNYEYAWGMYTTGIEINEE 159
                 78*****************9999999999986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0041        10       8      28 ..      19      39 ..      14      43 .. 0.84
   2 !    7.7   0.0    0.0016       4.1       3      25 ..      95     117 ..      93     126 .. 0.81
   3 !    6.9   0.1     0.003       7.7       2      20 ..     128     146 ..     127     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0041
       TPR_2  8 GlayyklgdyeeAleafekAl 28
                G+ + + ++ye+Al +f +A+
  CCE29637.1 19 GRHCCAIQKYERALPFFTRAI 39
                67777889***********98 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0016
       TPR_2   3 alynlGlayyklgdyeeAleafe 25 
                 al  ++ +++++g++++A ++ e
  CCE29637.1  95 ALDLRAASHEAMGRLDDAMNDAE 117
                 7889**************99877 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.003
       TPR_2   2 ealynlGlayyklgdyeeA 20 
                 +++ +lG++++ +++ye A
  CCE29637.1 128 DGYLRLGKVARLQNNYEYA 146
                 7899************977 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.65   1.7e+03      15      35 ..      26      46 ..      15      54 .. 0.71
   2 !   17.8   0.6   1.7e-06    0.0043       3      43 ..      95     135 ..      93     136 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.65
      TPR_14 15 GdpdeAiallrralalaPdda 35
                +++++A+  + ra+  +P  +
  CCE29637.1 26 QKYERALPFFTRAIGSCPCTR 46
                567888888888887777555 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.7e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 al ++a+ ++a G++d+A++ ++++++laP  ++ +l+l++
  CCE29637.1  95 ALDLRAASHEAMGRLDDAMNDAEWMVELAPRLPDGYLRLGK 135
                 67889*********************************997 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.016        40      52      72 ..      19      39 ..      14      42 .. 0.70
   2 !    7.0   0.0    0.0027         7      39      70 ..      87     118 ..      83     125 .. 0.83
   3 ?    5.1   0.0     0.011        27      48      76 ..     130     158 ..     128     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.016
      TPR_12 52 grlyralgryeeAlelleeal 72
                gr + a  +ye Al ++++a+
  CCE29637.1 19 GRHCCAIQKYERALPFFTRAI 39
                556666677888888877775 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0027
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlellee 70 
                 +d+p+ + +l   +  ++a+gr+++A +  e 
  CCE29637.1  87 CDNPYHILALDLRAASHEAMGRLDDAMNDAEW 118
                 6899999******************9876665 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.011
      TPR_12  48 lrnLgrlyralgryeeAlelleealaiae 76 
                 +  Lg + r++++ye A+ +++  ++i e
  CCE29637.1 130 YLRLGKVARLQNNYEYAWGMYTTGIEINE 158
                 6789*****************99999876 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.35   9.1e+02      49      62 ..      27      40 ..      19      43 .. 0.59
   2 !   15.2   1.3   9.9e-06     0.025       4      51 ..     100     144 ..      98     146 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.35
      TPR_16 49 rlaeAaalyraalr 62
                 +++A+ ++ +a++
  CCE29637.1 27 KYERALPFFTRAIG 40
                35555555555554 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 9.9e-06
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrla 51 
                 a ++ + g+ ddA + +e+ ++++   P+ ++ +l lg +a  q++++
  CCE29637.1 100 AASHEAMGRLDDAMNDAEWMVELA---PRLPDGYLRLGKVARLQNNYE 144
                 6788899*****************...99999************9997 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00027      0.69       6      26 ..      19      39 ..      15      43 .. 0.86
   2 ?    0.3   0.1      0.35     9e+02       1      18 [.      95     112 ..      95     114 .. 0.82
   3 ?    1.5   0.1      0.15   3.9e+02       2      22 ..     130     150 ..     130     160 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00027
       TPR_7  6 arlysrlGdyeeAielyeqsL 26
                +r +++ ++ye+A+ ++++++
  CCE29637.1 19 GRHCCAIQKYERALPFFTRAI 39
                8899***************43 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.35
       TPR_7   1 aLlnLarlysrlGdyeeA 18 
                 aL+  a  ++++G+ ++A
  CCE29637.1  95 ALDLRAASHEAMGRLDDA 112
                 5777788999****9999 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.15
       TPR_7   2 LlnLarlysrlGdyeeAiely 22 
                 +l+L+ + + +++ye A + y
  CCE29637.1 130 YLRLGKVARLQNNYEYAWGMY 150
                 689999999999999665555 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0078        20       4      21 ..      15      32 ..      13      34 .. 0.84
   2 ?    4.6   0.0      0.01        26      21      37 ..     120     136 ..     105     140 .. 0.83
   3 ?   -0.1   0.0       0.3   7.8e+02       1      26 [.     134     159 ..     134     161 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0078
      TPR_11  4 yyeqGkyeeAieaYkkAl 21
                + + G+   Ai++Y++Al
  CCE29637.1 15 LIQSGRHCCAIQKYERAL 32
                678888888********8 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.01
      TPR_11  21 lkldPdnaeayynLGla 37 
                 ++l P  ++ y+ LG++
  CCE29637.1 120 VELAPRLPDGYLRLGKV 136
                 6899***********97 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.3
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPd 26 
                 G++ + q++ye A   Y + ++++++
  CCE29637.1 134 GKVARLQNNYEYAWGMYTTGIEINEE 159
                 56667899999998888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1367.07
//
Query:       CCE29638.1  [L=189]
Description: uncharacterized protein CPUR_03485 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.082   12.8   0.0       0.15   12.0   0.0    1.4  1  zf-LYAR   LYAR-type C2HC zinc finger


Domain annotation for each model (and alignments):
>> zf-LYAR  LYAR-type C2HC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.1e-06      0.15      10      23 ..      13      27 ..      10      31 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.1e-06
     zf-LYAR 10 Fdg.deykaHtsCIt 23
                F++  ++++H+sCI+
  CCE29638.1 13 FRNlRSFRSHNSCIS 27
                777799********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1487.04
//
Query:       CCE29639.1  [L=597]
Description: uncharacterized protein CPUR_03486 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.002   17.9   0.6     0.0052   16.6   0.6    1.7  1  F-box     F-box domain
     0.0064   16.3   1.2       0.55   10.1   0.1    3.3  3  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.067   13.5   0.1       0.18   12.1   0.1    1.7  1  TPR_12    Tetratricopeptide repeat
      0.087   13.7   0.7       0.35   11.8   0.7    2.1  1  TPR_14    Tetratricopeptide repeat
       0.14   12.8   0.9       0.43   11.3   0.7    1.9  2  TPR_16    Tetratricopeptide repeat
        0.3   11.3   2.1         16    5.9   0.2    3.1  3  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.6   1.7e-06    0.0052       4      29 ..     139     164 ..     137     164 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.7e-06
                 HHS-HHHHHHHHHTS-HHHHHHHCTT CS
       F-box   4 srLPsevlrhILerLplsdllalrrV 29 
                 ++LPse++  I+ +L+++++l lr++
  CCE29639.1 139 LCLPSELVTRIFLHLNFTEILVLRST 164
                 79**********************85 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.055   1.6e+02      11      27 ..      22      38 ..      19      38 .. 0.83
   2 !   10.1   0.1   0.00018      0.55       7      33 ..      50      76 ..      49      77 .. 0.94
   3 ?    0.4   0.0      0.23   6.8e+02       2      29 ..      79     106 ..      78     111 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.055
                HHHTT-HHHHHHHHHHH CS
       TPR_1 11 yfklgkydeAleyyekA 27
                ++  +ky+ Al ++ ++
  CCE29639.1 22 CYAVQKYERALPFFTRC 38
                577789*******9985 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00018
                HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  7 lGnayfklgkydeAleyyekALelnPn 33
                +++ y  lgk+d+A  + e  Lel P 
  CCE29639.1 50 RAASYGALGKLDDAMNDAEWILELAPR 76
                899*********************995 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALe 29 
                 + + +lG + + ++k + A   y   +e
  CCE29639.1  79 DGYLRLGKVAQLQKKDEYAWRVYTAGIE 106
                 6899*********997777555555555 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   5.9e-05      0.18      21      76 ..      23      75 ..      14      76 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.9e-05
      TPR_12 21 eAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76
                 A + +e+al  ++r    d+p+ + +l   +  y alg++++A +  e  l++a+
  CCE29639.1 23 YAVQKYERALPFFTRC---DNPYHILALDLRAASYGALGKLDDAMNDAEWILELAP 75
                58889********886...6666799********************9999999875 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   0.00012      0.35       3      43 ..      46      86 ..      44      87 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
      TPR_14  3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43
                al ++a+ + alG++d+A++ ++++l+laP   + +l+l++
  CCE29639.1 46 ALDLRAASYGALGKLDDAMNDAEWILELAPRLSDGYLRLGK 86
                67789999***********************9999999987 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.8   8.4e+03      42      57 ..      20      35 ..      18      37 .. 0.57
   2 ?   11.3   0.7   0.00015      0.43       3      44 ..      50      88 ..      49      96 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.8
      TPR_16 42 daalrqgrlaeAaaly 57
                + +++ + +++A+ ++
  CCE29639.1 20 RHCYAVQKYERALPFF 35
                5556666666666555 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00015
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaa 44
                +a ++ ++g+ ddA + +e+ l+++   P+  + +l lg +a
  CCE29639.1 50 RAASYGALGKLDDAMNDAEWILELA---PRLSDGYLRLGKVA 88
                5788999******************...***********988 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.031        92       7      26 ..      18      37 ..      13      38 .. 0.85
   2 ?    5.9   0.2    0.0054        16       3      32 ..      46      75 ..      44      77 .. 0.88
   3 ?   -1.3   0.1       1.1   3.2e+03       3      20 ..      80      97 ..      78     110 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.031
       TPR_2  7 lGlayyklgdyeeAleafek 26
                 G+ +y+ ++ye+Al +f +
  CCE29639.1 18 SGRHCYAVQKYERALPFFTR 37
                5889999********99987 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0054
       TPR_2  3 alynlGlayyklgdyeeAleafekAleldP 32
                al  ++ +y +lg++++A ++ e  lel+P
  CCE29639.1 46 ALDLRAASYGALGKLDDAMNDAEWILELAP 75
                7889***************99998888888 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.1
       TPR_2  3 alynlGlayyklgdyeeA 20
                ++ +lG+++  +++ e A
  CCE29639.1 80 GYLRLGKVAQLQKKDEYA 97
                688999999999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4364.87
//
Query:       CCE29640.1  [L=447]
Description: uncharacterized protein CPUR_03487 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0004   20.1   3.6      0.018   14.8   0.1    3.7  5  TPR_1     Tetratricopeptide repeat
     0.0011   18.9   2.6          5    7.5   0.0    3.8  4  TPR_2     Tetratricopeptide repeat
     0.0012   19.5   0.1       0.01   16.6   0.8    2.2  2  TPR_14    Tetratricopeptide repeat
      0.002   18.4   0.1       0.82   10.0   0.0    2.9  3  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   16.0   0.5      0.031   14.9   0.5    1.6  1  TPR_16    Tetratricopeptide repeat
       0.32   10.6   5.5       0.52    9.8   5.5    1.3  1  FAM221    Protein FAM221A/B


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.021        64      14      28 ..      14      28 ..      11      32 .. 0.83
   2 ?   -2.2   0.0       1.5   4.4e+03      24      32 ..      58      66 ..      58      66 .. 0.88
   3 !   14.8   0.1   6.1e-06     0.018       7      33 ..      88     114 ..      87     115 .. 0.95
   4 ?   -0.9   0.0      0.58   1.7e+03       2      17 ..     117     132 ..     116     135 .. 0.83
   5 ?   -2.9   0.0       2.5   7.5e+03       4      11 ..     240     247 ..     238     249 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.021
                TT-HHHHHHHHHHHH CS
       TPR_1 14 lgkydeAleyyekAL 28
                 +ky+ Al ++ kA 
  CCE29640.1 14 TQKYKRALTFFTKAM 28
                579**********95 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
                HHHHHHHST CS
       TPR_1 24 yekALelnP 32
                +++A+e++P
  CCE29640.1 58 FKEAVEICP 66
                899999998 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 6.1e-06
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 +++ay  l k+d+A+++ e  Lel P 
  CCE29640.1  88 RAAAYEALSKLDQAIKDAEWILELAPR 114
                 89**********************995 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.58
                 HHHHHHHHHHHHTT-H CS
       TPR_1   2 kalynlGnayfklgky 17 
                 + +  lG + ++++k 
  CCE29640.1 117 DGYLCLGRIARQQKKD 132
                 78999********985 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 2.5
                 HHHHHHHH CS
       TPR_1   4 lynlGnay 11 
                 + n+Gn +
  CCE29640.1 240 CLNRGNSL 247
                 6899*987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0017         5       8      32 ..       8      32 ..       4      32 .. 0.86
   2 ?   -2.5   0.0       2.6   7.9e+03      24      32 ..      58      66 ..      58      66 .. 0.89
   3 !    7.2   0.4     0.002       6.1       3      33 ..      84     114 ..      82     115 .. 0.89
   4 ?    1.2   0.1      0.17     5e+02       2      18 ..     117     133 ..     116     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0017
       TPR_2  8 GlayyklgdyeeAleafekAleldP 32
                G+ + + ++y++Al +f kA + +P
  CCE29640.1  8 GRRCHATQKYKRALTFFTKAMRSCP 32
                67788999************98776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.6
       TPR_2 24 fekAleldP 32
                f++A+e++P
  CCE29640.1 58 FKEAVEICP 66
                899999998 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.002
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 al  ++ ay++l ++++A+++ e  lel+P+
  CCE29640.1  84 ALDSRAAAYEALSKLDQAIKDAEWILELAPR 114
                 77889****************9988888885 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.17
       TPR_2   2 ealynlGlayyklgdye 18 
                 +++ +lG++++++++ e
  CCE29640.1 117 DGYLCLGRIARQQKKDE 133
                 6899*********9876 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         6   1.8e+04      24      37 ..      58      71 ..      57      74 .. 0.77
   2 !   16.6   0.8   3.3e-06      0.01       2      44 .]      83     125 ..      82     125 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6
      TPR_14 24 lrralalaPddaea 37
                +++a++ +P +  +
  CCE29640.1 58 FKEAVEICPCNVGI 71
                78999999987765 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 3.3e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 +al  +a+a++al ++d+Ai+ ++++l+laP  ++ +l l+++
  CCE29640.1  83 QALDSRAAAYEALSKLDQAIKDAEWILELAPRLPDGYLCLGRI 125
                 578899*********************************9985 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0094        28      52      74 ..       8      30 ..       4      32 .. 0.83
   2 !   10.0   0.0   0.00027      0.82      39      76 ..      76     113 ..      57     114 .. 0.90
   3 ?   -1.6   0.1       1.1   3.4e+03      51      75 ..     122     146 ..     119     148 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0094
      TPR_12 52 grlyralgryeeAlelleealai 74
                gr ++a+ +y+ Al ++++a++ 
  CCE29640.1  8 GRRCHATQKYKRALTFFTKAMRS 30
                67788999***********9986 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00027
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +d+p  +++l   + +y+al ++++A++  e  l++a+
  CCE29640.1  76 CDNPHHIQALDSRAAAYEALSKLDQAIKDAEWILELAP 113
                 688889*************************9999986 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.1
      TPR_12  51 LgrlyralgryeeAlelleealaia 75 
                 Lgr+ r++++ e A+++++  ++++
  CCE29640.1 122 LGRIARQQKKDEYAWKIYTAGIEAM 146
                 7999999999999999888777765 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.5     1e-05     0.031       3      49 ..      88     131 ..      87     149 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-05
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                 +a a+ ++ + d+A++ +e+ l+++   P+ ++ +l lg++a +q+ 
  CCE29640.1  88 RAAAYEALSKLDQAIKDAEWILELA---PRLPDGYLCLGRIARQQKK 131
                 5889999******************...99999**********9975 PP

>> FAM221  Protein FAM221A/B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.5   0.00017      0.52      49     104 ..       4      59 ..       2      80 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00017
      FAM221  49 ligpetkCfCehRykqHktdlekipserpiklpCkvkkCkCksyeyvpaegsqklr 104
                 li+   +C  + +yk+  t ++k +++ p + + k  kC+C+++e +  +g++ ++
  CCE29640.1   4 LIKSGRRCHATQKYKRALTFFTKAMRSCPCSNRSKLDKCTCRDFEKIASQGGSIFK 59 
                 6777889********************************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3166.98
//
Query:       CCE29641.1  [L=444]
Description: uncharacterized protein CPUR_03488 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-05   25.1   1.6       0.69   10.2   0.4    3.8  4  TPR_2     Tetratricopeptide repeat
    4.2e-05   23.2   2.4      0.023   14.5   0.1    3.8  5  TPR_1     Tetratricopeptide repeat
     0.0012   19.1   0.0          3    8.2   0.0    2.8  3  TPR_12    Tetratricopeptide repeat
     0.0041   17.8   0.0      0.051   14.4   0.3    2.6  3  TPR_14    Tetratricopeptide repeat
     0.0098   16.5   0.1      0.045   14.4   0.4    1.9  2  TPR_16    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.046   13.4   0.0         17    5.2   0.1    3.5  3  TPR_11    TPR repeat
      0.089   13.1   1.1         13    6.3   0.1    3.1  4  TPR_8     Tetratricopeptide repeat
       0.13   11.8   3.1       0.26   10.8   3.1    1.4  1  FAM221    Protein FAM221A/B
          1    9.4   9.8       0.74    9.8   4.7    2.6  2  SEC-C     SEC-C motif


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00045       0.9       8      32 ..       8      32 ..       3      32 .. 0.87
   2 ?   -2.5   0.0       3.9   7.8e+03      24      32 ..      58      66 ..      58      66 .. 0.89
   3 !   10.2   0.4   0.00035      0.69       3      33 ..      84     114 ..      82     115 .. 0.89
   4 ?    1.2   0.1      0.25   5.1e+02       2      18 ..     117     133 ..     116     144 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00045
       TPR_2  8 GlayyklgdyeeAleafekAleldP 32
                G+ + + g+y++Al +f kA + +P
  CCE29641.1  8 GRRCHATGKYKRALTFFTKAMRSCP 32
                7778899*************98776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.9
       TPR_2 24 fekAleldP 32
                f++A+e++P
  CCE29641.1 58 FKEAVEICP 66
                899999998 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00035
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 al  ++ +y++lg++++A+++ e  lel+P+
  CCE29641.1  84 ALDFRAASYEALGKLNQAIKDAEWILELAPR 114
                 78889****************9998888885 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.25
       TPR_2   2 ealynlGlayyklgdye 18 
                 +++ +lG++++++++ e
  CCE29641.1 117 DGYLCLGRIARQQKKDE 133
                 6899*********9866 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0058        11      13      28 ..      13      28 ..      11      32 .. 0.85
   2 ?   -2.2   0.0       2.2   4.4e+03      24      32 ..      58      66 ..      58      66 .. 0.88
   3 !   14.5   0.1   1.2e-05     0.023       7      33 ..      88     114 ..      87     115 .. 0.94
   4 ?   -0.9   0.0      0.86   1.7e+03       2      17 ..     117     132 ..     116     135 .. 0.83
   5 ?   -2.9   0.0       3.7   7.4e+03       4      11 ..     231     238 ..     229     240 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0058
                HTT-HHHHHHHHHHHH CS
       TPR_1 13 klgkydeAleyyekAL 28
                  gky+ Al ++ kA 
  CCE29641.1 13 ATGKYKRALTFFTKAM 28
                679***********96 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.2
                HHHHHHHST CS
       TPR_1 24 yekALelnP 32
                +++A+e++P
  CCE29641.1 58 FKEAVEICP 66
                899999998 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 1.2e-05
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 +++ y  lgk+++A+++ e  Lel P 
  CCE29641.1  88 RAASYEALGKLNQAIKDAEWILELAPR 114
                 799*********************995 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.86
                 HHHHHHHHHHHHTT-H CS
       TPR_1   2 kalynlGnayfklgky 17 
                 + +  lG + ++++k 
  CCE29641.1 117 DGYLCLGRIARQQKKD 132
                 78999********985 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 3.7
                 HHHHHHHH CS
       TPR_1   4 lynlGnay 11 
                 + n+Gn +
  CCE29641.1 231 CLNRGNSL 238
                 6899*987 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0015         3      52      74 ..       8      30 ..       4      32 .. 0.86
   2 !    7.8   0.0    0.0019       3.9      39      76 ..      76     113 ..      57     114 .. 0.85
   3 ?   -2.6   0.1       3.7   7.3e+03      51      69 ..     122     140 ..     119     145 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
      TPR_12 52 grlyralgryeeAlelleealai 74
                gr ++a+g+y+ Al ++++a++ 
  CCE29641.1  8 GRRCHATGKYKRALTFFTKAMRS 30
                77899***************986 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0019
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +d p  +++l   +  y+alg++ +A++  e  l++a+
  CCE29641.1  76 CDDPHHIQALDFRAASYEALGKLNQAIKDAEWILELAP 113
                 67777899********************9999999985 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.7
      TPR_12  51 LgrlyralgryeeAlelle 69 
                 Lgr+ r++++ e A+++++
  CCE29641.1 122 LGRIARQQKKDEYAWKIYT 140
                 7888888888887777776 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.3   4.6e+03      11      32 ..      11      32 ..       5      39 .. 0.79
   2 ?   -2.9   0.0         9   1.8e+04      24      38 ..      58      72 ..      57      75 .. 0.78
   3 !   14.4   0.3   2.6e-05     0.051       3      44 .]      84     125 ..      82     125 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.3
      TPR_14 11 llalGdpdeAiallrralalaP 32
                + a G++++A++ + +a + +P
  CCE29641.1 11 CHATGKYKRALTFFTKAMRSCP 32
                6688999999999988876666 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 9
      TPR_14 24 lrralalaPddaeaw 38
                +++a++ +P +  ++
  CCE29641.1 58 FKEAVEICPCNVGIL 72
                789999999887665 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 2.6e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 al  +a+ ++alG++ +Ai+ ++++l+laP  ++ +l l+++
  CCE29641.1  84 ALDFRAASYEALGKLNQAIKDAEWILELAPRLPDGYLCLGRI 125
                 778899********************************9985 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.3   4.6e+03      45      60 ..      12      27 ..       8      32 .. 0.77
   2 !   14.4   0.4   2.3e-05     0.045       4      49 ..      89     131 ..      88     145 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.3
      TPR_16 45 lrqgrlaeAaalyraa 60
                 + g +++A+ ++ +a
  CCE29641.1 12 HATGKYKRALTFFTKA 27
                5779999999999887 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.3e-05
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                 a ++ ++g+  +A++ +e+ l+++   P+ ++ +l lg++a +q+ 
  CCE29641.1  89 AASYEALGKLNQAIKDAEWILELA---PRLPDGYLCLGRIARQQKK 131
                 678999******************...99999**********9975 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.06   1.2e+02       1      20 [.       8      27 ..       8      32 .. 0.81
   2 ?    0.8   0.0      0.21   4.1e+02      18      33 ..      59      74 ..      58      75 .. 0.85
   3 ?    5.2   0.1    0.0086        17       6      35 ..      94     123 ..      91     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.06
      TPR_11  1 GdayyeqGkyeeAieaYkkA 20
                G+ +++ Gky+ A++ + kA
  CCE29641.1  8 GRRCHATGKYKRALTFFTKA 27
                88999********9866666 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.21
      TPR_11 18 kkAlkldPdnaeayyn 33
                k+A++++P n+ ++++
  CCE29641.1 59 KEAVEICPCNVGILLK 74
                89******99988776 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0086
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLG 35 
                 ++Gk+++Ai++ +  l+l P  ++ y++LG
  CCE29641.1  94 ALGKLNQAIKDAEWILELAPRLPDGYLCLG 123
                 689999999998888999999999999999 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.038        75      12      30 ..      12      30 ..       7      32 .. 0.86
   2 ?   -2.4   0.0         4     8e+03      23      32 ..      57      66 ..      56      66 .. 0.82
   3 ?    6.3   0.1    0.0067        13       7      32 ..      88     113 ..      82     114 .. 0.83
   4 ?   -3.2   0.1       7.5   1.5e+04       7      17 ..     122     132 ..     118     141 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.038
                HHTT-HHHHHHHHHHHHHH CS
       TPR_8 12 lklgdyeeAkeyyekalel 30
                + +g+y+ A  ++ ka + 
  CCE29641.1 12 HATGKYKRALTFFTKAMRS 30
                578*************875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4
                HHHHHHHHHH CS
       TPR_8 23 yyekaleldp 32
                 +++a+e+ p
  CCE29641.1 57 IFKEAVEICP 66
                6999999977 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0067
                 HHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldp 32 
                  +  y+ lg++++A++  e  lel+p
  CCE29641.1  88 RAASYEALGKLNQAIKDAEWILELAP 113
                 5678************9998888887 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 7.5
                 HHHHHHHTT-H CS
       TPR_8   7 lgsiylklgdy 17 
                 lg+i +++++ 
  CCE29641.1 122 LGRIARQQKKD 132
                 78888555543 PP

>> FAM221  Protein FAM221A/B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.1   0.00013      0.26      49     104 ..       4      59 ..       2      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
      FAM221  49 ligpetkCfCehRykqHktdlekipserpiklpCkvkkCkCksyeyvpaegsqklr 104
                 li+   +C  + +yk+  t ++k +++ p +   k  kC+C+++e +  +g++ ++
  CCE29641.1   4 LIKSGRRCHATGKYKRALTFFTKAMRSCPCSSGTKLDKCTCRNFEKIASQGGSIFK 59 
                 6777789*******************************************998877 PP

>> SEC-C  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.7   0.00037      0.74       5      17 ..      31      44 ..      30      46 .. 0.92
   2 ?    1.8   0.2      0.12   2.4e+02       5      16 ..      65      76 ..      63      76 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00037
       SEC-C  5 CPCGSGkKYKkC.C 17
                CPC SG K  kC C
  CCE29641.1 31 CPCSSGTKLDKCtC 44
                ************88 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.12
       SEC-C  5 CPCGSGkKYKkC 16
                CPC  G   K+C
  CCE29641.1 65 CPCNVGILLKRC 76
                ***877666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 3097.65
//
Query:       CCE29642.1  [L=678]
Description: uncharacterized protein CPUR_03489 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-08   32.2   1.5    2.6e-07   30.4   0.9    2.3  2  F-box-like  F-box-like
    3.9e-05   23.3   2.5     0.0082   15.9   0.1    3.6  5  TPR_1       Tetratricopeptide repeat
    9.8e-05   22.2   2.2       0.59   10.4   0.3    3.8  4  TPR_2       Tetratricopeptide repeat
    0.00011   22.4   0.2       0.33   11.3   0.0    2.9  3  TPR_12      Tetratricopeptide repeat
    0.00013   21.7   0.2    0.00036   20.3   0.2    1.7  1  F-box       F-box domain
    0.00035   21.1   0.1      0.003   18.2   0.5    2.5  1  TPR_14      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.3   0.3      0.028   15.1   0.3    1.7  1  TPR_16      Tetratricopeptide repeat
      0.023   14.7   0.0        5.4    7.3   0.0    2.8  2  TPR_7       Tetratricopeptide repeat
       0.09   12.7   8.8        1.2    9.1   4.7    2.8  2  SEC-C       SEC-C motif
       0.14   12.5   2.0        3.9    7.9   0.1    3.2  4  TPR_8       Tetratricopeptide repeat
       0.18   11.5   0.0         19    5.0   0.1    3.2  3  TPR_11      TPR repeat
        1.5    9.1   7.7        4.2    7.6   7.7    1.8  1  GASA        Gibberellin regulated protein


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.9   4.3e+03      26      36 ..      42      52 ..      32      59 .. 0.84
   2 !   30.4   0.9   1.7e-10   2.6e-07       2      45 ..     177     222 ..     176     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.9
  F-box-like 26 lVCrrWrrval 36
                ++Cr +  +a+
  CCE29642.1 42 CTCRNFEKIAS 52
                69****99995 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 1.7e-10
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrl 45 
                 ++LP E+  qIFs L+ ++L ++ +VC+ W r   ++   +LWr +
  CCE29642.1 177 LSLPSELVTQIFSELEYKQLFPCLRVCKEWTRTLTSPlhGQLWRDI 222
                 58****************************9998544334788765 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.013        19      13      28 ..      13      28 ..      11      32 .. 0.85
   2 ?   -2.9   0.0       4.7     7e+03      24      32 ..      58      66 ..      58      66 .. 0.88
   3 !   15.9   0.1   5.5e-06    0.0082       7      33 ..      88     114 ..      87     115 .. 0.95
   4 ?   -1.6   0.0       1.9   2.8e+03       2      17 ..     117     132 ..     116     135 .. 0.83
   5 ?   -3.6   0.0         8   1.2e+04       4      12 ..     455     463 ..     454     464 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.013
                HTT-HHHHHHHHHHHH CS
       TPR_1 13 klgkydeAleyyekAL 28
                  gky+ Al ++ kA 
  CCE29642.1 13 AIGKYKRALTFFTKAM 28
                679***********95 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.7
                HHHHHHHST CS
       TPR_1 24 yekALelnP 32
                +++A+e++P
  CCE29642.1 58 FKEAVEICP 66
                899999998 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 5.5e-06
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 ++++y  lgk+d+A+++ e  Lel P 
  CCE29642.1  88 RAATYEALGKLDQAIKDAEWILELAPR 114
                 799*********************995 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHTT-H CS
       TPR_1   2 kalynlGnayfklgky 17 
                 + +  lG + ++++k 
  CCE29642.1 117 DGYLCLGRIARQQKKD 132
                 78999********985 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 8
                 HHHHHHHHH CS
       TPR_1   4 lynlGnayf 12 
                 + n+Gn ++
  CCE29642.1 455 CLNRGNSLQ 463
                 679**9875 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0024       3.5       8      32 ..       8      32 ..       3      32 .. 0.85
   2 ?   -3.1   0.0       8.4   1.2e+04      24      32 ..      58      66 ..      58      66 .. 0.89
   3 !   10.4   0.3    0.0004      0.59       3      33 ..      84     114 ..      82     115 .. 0.89
   4 ?    0.6   0.1      0.55   8.2e+02       2      18 ..     117     133 ..     116     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0024
       TPR_2  8 GlayyklgdyeeAleafekAleldP 32
                G+ + + g+y++Al +f kA + +P
  CCE29642.1  8 GRRCHAIGKYKRALTFFTKAMRSCP 32
                7778889*************98776 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.4
       TPR_2 24 fekAleldP 32
                f++A+e++P
  CCE29642.1 58 FKEAVEICP 66
                899999998 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.0004
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 al  ++  y++lg++++A+++ e  lel+P+
  CCE29642.1  84 ALDFRAATYEALGKLDQAIKDAEWILELAPR 114
                 78889****************9988888885 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.55
       TPR_2   2 ealynlGlayyklgdye 18 
                 +++ +lG++++++++ e
  CCE29642.1 117 DGYLCLGRIARQQKKDE 133
                 6899*********9876 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0024       3.6      48      74 ..       4      30 ..       2      32 .. 0.88
   2 !   11.3   0.0   0.00022      0.33      39      76 ..      76     113 ..      68     114 .. 0.91
   3 ?   -2.4   0.1         4   5.9e+03      51      74 ..     122     145 ..     119     148 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0024
      TPR_12 48 lrnLgrlyralgryeeAlelleealai 74
                l+  gr ++a g+y+ Al ++++a++ 
  CCE29642.1  4 LIKCGRRCHAIGKYKRALTFFTKAMRS 30
                56789999****************986 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00022
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +d+p  +++l   + +y+alg++++A++  e  l++a+
  CCE29642.1  76 CDNPHHIQALDFRAATYEALGKLDQAIKDAEWILELAP 113
                 6888899************************9999986 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4
      TPR_12  51 LgrlyralgryeeAlelleealai 74 
                 Lgr+ r++++ e A+++++  +++
  CCE29642.1 122 LGRIARQQKKDEYAWKIYTAGIEA 145
                 789999999999888888877666 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.2   2.4e-07   0.00036       4      36 ..     177     209 ..     175     214 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.4e-07
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwril 36 
                 ++LPse++ +I++ L+ + l+ + rV+k w + 
  CCE29642.1 177 LSLPSELVTQIFSELEYKQLFPCLRVCKEWTRT 209
                 79****************************665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.5     2e-06     0.003       3      44 .]      84     125 ..      82     125 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 al  +a+ ++alG++d+Ai+ ++++l+laP  ++ +l l+++
  CCE29642.1  84 ALDFRAATYEALGKLDQAIKDAEWILELAPRLPDGYLCLGRI 125
                 77889*********************************9985 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.3   1.9e-05     0.028       4      49 ..      89     131 ..      88     149 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-05
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                 a  + ++g+ d+A++ +e+ l+++   P+ ++ +l lg++a +q+ 
  CCE29642.1  89 AATYEALGKLDQAIKDAEWILELA---PRLPDGYLCLGRIARQQKK 131
                 5568899*****************...99999**********9975 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0036       5.4       9      29 ..      11      29 ..       7      36 .. 0.87
   2 ?    4.2   0.1     0.035        52       1      20 [.      84     103 ..      84     111 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0036
       TPR_7  9 ysrlGdyeeAielyeqsLalt 29
                +++ G+y++A++++++  a++
  CCE29642.1 11 CHAIGKYKRALTFFTK--AMR 29
                5678************..776 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.035
       TPR_7   1 aLlnLarlysrlGdyeeAie 20 
                 aL+  a +y++lG+ ++Ai+
  CCE29642.1  84 ALDFRAATYEALGKLDQAIK 103
                 6788899***********96 PP

>> SEC-C  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.7    0.0008       1.2       5      17 ..      31      44 ..      30      46 .. 0.92
   2 ?    4.7   0.1      0.02        29       5      16 ..      65      76 ..      63      76 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0008
       SEC-C  5 CPCGSGkKYKkC.C 17
                CPC SG K  kC C
  CCE29642.1 31 CPCSSGTKLDKCtC 44
                ************88 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.02
       SEC-C  5 CPCGSGkKYKkC 16
                CPC  G  +KkC
  CCE29642.1 65 CPCNVGILFKKC 76
                ***********9 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.17   2.5e+02      13      30 ..      13      30 ..      11      32 .. 0.84
   2 ?   -3.0   0.0       8.6   1.3e+04      23      32 ..      57      66 ..      56      66 .. 0.82
   3 ?    7.9   0.1    0.0026       3.9       6      32 ..      87     113 ..      82     114 .. 0.84
   4 ?   -2.6   0.1         6     9e+03       7      30 ..     122     145 ..     118     148 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.17
                HTT-HHHHHHHHHHHHHH CS
       TPR_8 13 klgdyeeAkeyyekalel 30
                  g+y+ A  ++ ka + 
  CCE29642.1 13 AIGKYKRALTFFTKAMRS 30
                579************875 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.6
                HHHHHHHHHH CS
       TPR_8 23 yyekaleldp 32
                 +++a+e+ p
  CCE29642.1 57 IFKEAVEICP 66
                6999999977 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0026
                 HHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldp 32 
                   + +y+ lg++++A++  e  lel+p
  CCE29642.1  87 FRAATYEALGKLDQAIKDAEWILELAP 113
                 56789************9998888887 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 6
                 HHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekalel 30 
                 lg+i +++++ e A + y   +e+
  CCE29642.1 122 LGRIARQQKKDEYAWKIYTAGIEA 145
                 799998888877666666666665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.19   2.9e+02       1      20 [.       8      27 ..       8      32 .. 0.72
   2 ?    0.3   0.0      0.39   5.8e+02      18      33 ..      59      74 ..      58      75 .. 0.87
   3 ?    5.0   0.1     0.013        19       6      35 ..      94     123 ..      91     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.19
      TPR_11  1 GdayyeqGkyeeAieaYkkA 20
                G+ +++ Gky+ A++ + kA
  CCE29642.1  8 GRRCHAIGKYKRALTFFTKA 27
                77788888888888755555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.39
      TPR_11 18 kkAlkldPdnaeayyn 33
                k+A++++P n+ ++++
  CCE29642.1 59 KEAVEICPCNVGILFK 74
                89******99988876 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.013
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLG 35 
                 ++Gk+++Ai++ +  l+l P  ++ y++LG
  CCE29642.1  94 ALGKLDQAIKDAEWILELAPRLPDGYLCLG 123
                 689999999999999999999999999999 PP

>> GASA  Gibberellin regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.7    0.0028       4.2       5      55 ..       6      55 ..       4      67 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0028
        GASA  5 kCkvRCskasrkkrClkaCnlCcekCkCvPpGtygnkeeCpcYrdlktkkg 55
                kC +RC++  + kr l++ ++  ++C C  +Gt+ +k +C++++++ +++g
  CCE29642.1  6 KCGRRCHAIGKYKRALTFFTKAMRSCPC-SSGTKLDKCTCRNFEKIASQGG 55
                8***************************.59*************9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5024.69
//
Query:       CCE29643.1  [L=632]
Description: uncharacterized protein CPUR_03490 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-07   30.9   1.3    7.4e-07   29.0   0.8    2.4  2  F-box-like  F-box-like
    6.3e-06   25.9   0.1      2e-05   24.3   0.1    1.9  1  F-box       F-box domain
    0.00041   20.9   0.1     0.0028   18.3   0.5    2.3  1  TPR_14      Tetratricopeptide repeat
     0.0016   18.2   4.2     0.0076   16.0   0.1    3.5  4  TPR_1       Tetratricopeptide repeat
     0.0018   18.5   0.0       0.27   11.6   0.0    2.7  2  TPR_12      Tetratricopeptide repeat
      0.002   18.1   4.2       0.55   10.5   0.3    4.2  5  TPR_2       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.4   0.4      0.025   15.2   0.4    1.6  1  TPR_16      Tetratricopeptide repeat
      0.084   12.8   8.8        1.1    9.2   4.7    2.7  2  SEC-C       SEC-C motif
       0.16   12.0   0.1         40    4.6   0.0    2.8  2  TPR_7       Tetratricopeptide repeat
       0.41   10.2   4.8        0.7    9.4   4.8    1.3  1  FAM221      Protein FAM221A/B
       0.99    9.8   3.0        3.6    8.0   0.1    3.2  4  TPR_8       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.5     4e+03      26      36 ..      42      52 ..      32      59 .. 0.84
   2 !   29.0   0.8   4.5e-10   7.4e-07       2      45 ..     181     226 ..     180     229 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.5
  F-box-like 26 lVCrrWrrval 36
                ++Cr +  +a+
  CCE29643.1 42 CTCRNFEKIAS 52
                69****99995 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 4.5e-10
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrl 45 
                 ++LP E+  qIF  L+ ++L ++ +VC++W+    ++    LWr +
  CCE29643.1 181 LSLPSELVTQIFLELEYTELFPCLRVCKQWKHTLTSPqhGNLWRDI 226
                 69****************************9887554223577766 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   1.2e-08     2e-05       3      39 ..     180     216 ..     178     219 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.2e-08
                 HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT CS
       F-box   3 lsrLPsevlrhILerLplsdllalrrVSkgwrilids 39 
                 l++LPse++ +I+  L+ ++l+ + rV+k w+  + s
  CCE29643.1 180 LLSLPSELVTQIFLELEYTELFPCLRVCKQWKHTLTS 216
                 899*****************************98876 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.5   1.7e-06    0.0028       3      44 .]      84     125 ..      82     125 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.7e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 al  +a+ ++alG++d+Ai+ ++++l+laP  ++ +l l+++
  CCE29643.1  84 ALDFRAATYEALGKLDQAIKDAEWILELAPRLPDGYLCLGRI 125
                 77889*********************************9985 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.19     3e+02      16      28 ..      16      28 ..      12      32 .. 0.87
   2 ?   -2.7   0.0         4   6.5e+03      24      32 ..      58      66 ..      58      66 .. 0.88
   3 !   16.0   0.1   4.7e-06    0.0076       7      33 ..      88     114 ..      87     115 .. 0.95
   4 ?   -1.4   0.1       1.5   2.5e+03       2      17 ..     117     132 ..     116     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.19
                -HHHHHHHHHHHH CS
       TPR_1 16 kydeAleyyekAL 28
                ky+ Al ++ kA 
  CCE29643.1 16 KYKRALTFFTKAM 28
                899********95 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4
                HHHHHHHST CS
       TPR_1 24 yekALelnP 32
                +++A+e++P
  CCE29643.1 58 FKEAVEICP 66
                899999998 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 4.7e-06
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 ++++y  lgk+d+A+++ e  Lel P 
  CCE29643.1  88 RAATYEALGKLDQAIKDAEWILELAPR 114
                 799*********************995 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHTT-H CS
       TPR_1   2 kalynlGnayfklgky 17 
                 + +  lG + ++++k 
  CCE29643.1 117 DGYLCLGRIARQQKKD 132
                 78999*******9985 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.035        57      52      74 ..       8      30 ..       4      32 .. 0.85
   2 !   11.6   0.0   0.00016      0.27      39      76 ..      76     113 ..      58     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.035
      TPR_12 52 grlyralgryeeAlelleealai 74
                gr ++a+ +y+ Al ++++a++ 
  CCE29643.1  8 GRRCHATAKYKRALTFFTKAMRS 30
                67788999************986 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00016
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +d+p  +++l   + +y+alg++++A++  e  l++a+
  CCE29643.1  76 CDNPHHIQALDFRAATYEALGKLDQAIKDAEWILELAP 113
                 688889*************************9999986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.031        50      11      32 ..      11      32 ..       4      32 .. 0.81
   2 ?   -3.0   0.0       7.1   1.2e+04      24      32 ..      58      66 ..      58      66 .. 0.89
   3 !   10.5   0.3   0.00033      0.55       3      33 ..      84     114 ..      82     115 .. 0.89
   4 ?    1.3   0.1      0.29   4.7e+02       2      20 ..     117     135 ..     116     148 .. 0.79
   5 ?   -2.1   0.0       3.5   5.7e+03      23      33 ..     268     278 ..     266     279 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.031
       TPR_2 11 yyklgdyeeAleafekAleldP 32
                + +  +y++Al +f kA + +P
  CCE29643.1 11 CHATAKYKRALTFFTKAMRSCP 32
                666779***********98766 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.1
       TPR_2 24 fekAleldP 32
                f++A+e++P
  CCE29643.1 58 FKEAVEICP 66
                899999998 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00033
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 al  ++  y++lg++++A+++ e  lel+P+
  CCE29643.1  84 ALDFRAATYEALGKLDQAIKDAEWILELAPR 114
                 78889****************9988888885 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.29
       TPR_2   2 ealynlGlayyklgdyeeA 20 
                 +++ +lG++++++++ e A
  CCE29643.1 117 DGYLCLGRIARQQKKDEYA 135
                 6899*********998776 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 3.5
       TPR_2  23 afekAleldPn 33 
                 a+ + l+l Pn
  CCE29643.1 268 ALTQLLQLSPN 278
                 67899*****8 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.4   1.5e-05     0.025       4      49 ..      89     131 ..      88     149 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-05
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                 a  + ++g+ d+A++ +e+ l+++   P+ ++ +l lg++a +q+ 
  CCE29643.1  89 AATYEALGKLDQAIKDAEWILELA---PRLPDGYLCLGRIARQQKK 131
                 5568899*****************...99999**********9975 PP

>> SEC-C  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.7   0.00067       1.1       5      17 ..      31      44 ..      30      46 .. 0.92
   2 ?    4.8   0.1     0.017        27       5      16 ..      65      76 ..      63      76 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00067
       SEC-C  5 CPCGSGkKYKkC.C 17
                CPC SG K  kC C
  CCE29643.1 31 CPCSSGTKLDKCtC 44
                ************88 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.017
       SEC-C  5 CPCGSGkKYKkC 16
                CPC  G  +KkC
  CCE29643.1 65 CPCNVGILFKKC 76
                ***********9 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.025        40      10      29 ..      12      29 ..       8      36 .. 0.85
   2 ?    4.3   0.1     0.029        48       1      20 [.      84     103 ..      84     111 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.025
       TPR_7 10 srlGdyeeAielyeqsLalt 29
                ++  +y++A++++++  a++
  CCE29643.1 12 HATAKYKRALTFFTK--AMR 29
                56789**********..776 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.029
       TPR_7   1 aLlnLarlysrlGdyeeAie 20 
                 aL+  a +y++lG+ ++Ai+
  CCE29643.1  84 ALDFRAATYEALGKLDQAIK 103
                 6788899***********96 PP

>> FAM221  Protein FAM221A/B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.8   0.00043       0.7      49     104 ..       4      59 ..       2      80 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00043
      FAM221  49 ligpetkCfCehRykqHktdlekipserpiklpCkvkkCkCksyeyvpaegsqklr 104
                 li+   +C  + +yk+  t ++k +++ p +   k  kC+C+++e +  +g++ ++
  CCE29643.1   4 LIKSGRRCHATAKYKRALTFFTKAMRSCPCSSGTKLDKCTCRNFEKIASQGGSIFK 59 
                 6777889********************************************99887 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0         1   1.7e+03      15      30 ..      15      30 ..      11      32 .. 0.81
   2 ?   -2.9   0.0       7.3   1.2e+04      23      32 ..      57      66 ..      56      66 .. 0.82
   3 ?    8.0   0.1    0.0022       3.6       6      32 ..      87     113 ..      82     114 .. 0.84
   4 ?   -2.2   0.1       4.3     7e+03       7      31 ..     122     146 ..     117     148 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1
                T-HHHHHHHHHHHHHH CS
       TPR_8 15 gdyeeAkeyyekalel 30
                 +y+ A  ++ ka + 
  CCE29643.1 15 AKYKRALTFFTKAMRS 30
                6899********9875 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.3
                HHHHHHHHHH CS
       TPR_8 23 yyekaleldp 32
                 +++a+e+ p
  CCE29643.1 57 IFKEAVEICP 66
                6999999977 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0022
                 HHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldp 32 
                   + +y+ lg++++A++  e  lel+p
  CCE29643.1  87 FRAATYEALGKLDQAIKDAEWILELAP 113
                 56789************9998888887 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 4.3
                 HHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleld 31 
                 lg+i +++++ e A ++y   +e++
  CCE29643.1 122 LGRIARQQKKDEYAWKVYTAGIEAS 146
                 8999988888887777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4886.59
//
Query:       CCE29644.1  [L=103]
Description: uncharacterized protein CPUR_03491 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-12   46.6   0.5    1.2e-11   44.6   0.1    1.9  2  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.1   6.4e-16   1.2e-11      81     137 ..       6      59 ..       2      77 .. 0.93
   2 ?    0.4   0.0     0.029   5.1e+02       5      23 ..      84     102 ..      80     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 6.4e-16
       DDE_3  81 ivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrr 137
                 +++  Dna+iH+++ +++ +ee   +++ l +Pp SP+lNp E++w  l ++++k r
  CCE29644.1   6 TIFMHDNAPIHTAKIVKDCLEE--LGVTPLDWPPSSPDLNPTENLWACLEQRIFK-R 59 
                 56778*****************..*****************************99.3 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.029
       DDE_3   5 iDEsgfqlgtvrrrawakk 23 
                 +DE + +l +++ ++w+ k
  CCE29644.1  84 WDELEKELAVIDSKGWYTK 102
                 9***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 797.06
//
Query:       CCE29645.1  [L=535]
Description: related to hexokinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-50  172.4   0.0    1.6e-50  171.8   0.0    1.3  1  Hexokinase_2  Hexokinase
      2e-39  135.6   0.0    3.1e-39  135.0   0.0    1.2  1  Hexokinase_1  Hexokinase


Domain annotation for each model (and alignments):
>> Hexokinase_2  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.8   0.0   1.8e-54   1.6e-50       2     216 ..     260     503 ..     259     530 .. 0.87

  Alignments for each domain:
  == domain 1  score: 171.8 bits;  conditional E-value: 1.8e-54
                   EEEEESSSEEEEEEEEGGG-GGGTTTS........-TTSEEEEE--GGGTTTT-SS-..--HHHHHHHHHSSSTTS-HHHHCCSHHHHHHHHHHHHH CS
  Hexokinase_2   2 iGlIlGtGtNacyleklsnieklegkk........eksgemviNtEwgafgdegklpllrtkyDkeldeespnpgeqlfEkmiSGmYLGelvrlvll 90 
                    Gl+lGtG+N + + +++++   ++k         ++++++++NtE+g+fg+   + l++t++D++l +++p+p++q++E ++SGmYLGe+vrlvll
    CCE29645.1 260 FGLVLGTGVNLAAHLPVRSVG--KQKFgvrpenwfNEASHVIVNTELGMFGH---NILPLTRWDQALTKQHPRPDFQPLEHLVSGMYLGEVVRLVLL 351
                   79*******************..55667799*******************97...5556************************************** PP

                   HHHC.TSSSC.....CCCSTTSS-THHHHHHHC--BTT-HHHHHHHHHCCS---...-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH.-..... CS
  Hexokinase_2  91 dlieekllfkgkse.klktpysldteflseieedesedleevrevleellgles..vteedleivrevceavsrRaarlvAagiaallkk.lgk... 180
                   d+i  +++f g  + +lk +ysl t+++s+ie d+ +dl+ ++++++e +  ++  +t++dl++++++ ++vs+R+++lvA+++ +l++  l +   
    CCE29645.1 352 DAIAITGIFGGIVPpSLKGQYSLGTDTISMIEGDKFPDLRGASQLFSERHP-SHyrPTTSDLAAIKTISSFVSARSSALVATCVYTLWDMrL-Dfer 446
                   ***989***666556********************************9733.33236*******************************9742.2577 PP

                   ........................SSEEEEEESHHHHHSTTHHHHHHHHHHHHHT-- CS
  Hexokinase_2 181 .....................eekekvtvgvdGslyekypkfrerlqealrellgee 216
                                        + +++++v+++Gs++e+yp++   +q++l++l++  
    CCE29645.1 447 qyidslsemspertrieaamaHLQRTTVVAFNGSVIENYPGYLASCQRYLNQLIQGG 503
                   99********999999999987778888************************98543 PP

>> Hexokinase_1  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.0   3.4e-43   3.1e-39      11     199 .]      62     253 ..      53     253 .. 0.90

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 3.4e-43
                   --HHHHHHHHHHHHHHHHHHHS.S.STS--EE----S---S--EEEEEEEEESSSEEEEEEEEEESSS.....-EEEEEEE.EE--GGGGGSBHHHH CS
  Hexokinase_1  11 lsdeklkelvdrfleemekgLakekeslkmlptyvtrlPtGkekGtylAlDlGgtnlRvllveLlges.....kveitqek.ykipeelktgtaeeL 101
                   +++e l++l+ ++++++ ++L+++++   mlp+y ++lP G+e G y AlD+Gg++lRv+lv L+g++     + ei +   y+i++++k+ ++ ++
    CCE29645.1  62 TTSEGLQKLSTQLKKQFIERLREDEQ--CMLPSYSHQLPLGTELGHYVALDVGGSTLRVALVALRGREvvvdeQSEIISMRsYRIDKDVKSLKGMAF 156
                   567899****************6644..5************************************888555545554444379************** PP

                   HHHHHHHHHHHHHHH....ST..T-S-EEEEEEE-SSEE-SBTT--EE-S--TT---TT.-TTSBHHHHHHHHHHHTT-SEEEEEEE-HHHHHHHHH CS
  Hexokinase_1 102 FdfiakciaefleeegeekkeekeeeelplGftFSFPveqtsldegtlirwtKgfaikd.vegkdvvqllqealerkglpvkvvalvNDTvgtllsl 197
                   F ++a++i+e l e+g+    +++e++lp++  +SFP+eqts+  g+l++++K f ++    g+d++ ++++a++ ++l+v+  a+vND+ + lls+
    CCE29645.1 157 FGWMAENISEALGENGHYG--KNAEKPLPVACAWSFPIEQTSMGGGKLLPMGKAFLADQgLLGEDLGGIIKQACRDQNLHVELRAIVNDSSACLLSR 251
                   **************98775..45569*******************************65266*********************************** PP

                   HH CS
  Hexokinase_1 198 aY 199
                   aY
    CCE29645.1 252 AY 253
                   *9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3968.03
//
Query:       CCE29646.1  [L=357]
Description: probable glucosamine-6-phosphate isomerase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-22   79.7   0.0    4.5e-22   79.1   0.0    1.2  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.0   2.5e-26   4.5e-22       5     209 ..      11     221 ..       7     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 2.5e-26
                      HHHHHHHHHHHHHHHHHHHHHS-.EEEEE--SHCHHHHHHHHHCSG.GGGGS-GGGEEEEESEEES.S-TTSTT-HHHHHHHHTGGGS---GGG CS
  Glucosamine_iso   5 elaealaarivealeealaergr.aslalsGGstpkalyealaeeeeaaaaldwskvhvflgDERf.VpaddpdsNaklareallskvkipean 96 
                      + ++ +a++i+ea+++ + + ++ + l l  Gs+p  +y+ l e+ +a+ ++++++v  f  DE + +p d+p+s +  + ++++s+v+++++n
       CCE29646.1  11 AASSYVANYIIEAITAFQPTAETpFVLGLPTGSSPLGVYKILVEKYKAG-EISFENVVTFNMDEYVgIPRDHPESYHSFMWKHFFSHVNVHPSN 103
                      5567799*********99766544*******************977655.9*************9879************************** PP

                      EE-S-TTSSTHHHHHHHHHHHHHHHHCCSSSSSESEEEE---TTS-BTTB-TTCHHHH.......CSSSSEEEESSBS..........TSSS-E CS
  Glucosamine_iso  97 vhpikesaaeapeaaaaayeeelkellakelpvfDlvlLGmGpDGHtaSLFPgspele.......etdrlvvavedsp..........kpppeR 173
                      vh ++ +a  +++a+  aye+ +k+     +  +Dl l G+G+DGH+a   Pgs                    +d+             +  R
       CCE29646.1 104 VHILNGNAP-DLDAECIAYEDAIKA-----VGGIDLFLAGIGEDGHIAFNEPGSSLASrtrvktlA--------HDTIlansrffdddISQVPR 183
                      ****97666.68************7.....457***************888888874323333321........22222222233444334566 PP

                      EEE-..HHHHTTCSEEEEEEESHHHHHHHHHHHTT..T CS
  Glucosamine_iso 174 itlT..lpvlnsarevlflvaGeeKaealeevlsgedp 209
                      + lT  ++++ +arev++++ G +Ka+al++ +++  +
       CCE29646.1 184 LALTvgVQTVLEAREVVVIILGPRKASALQRCIEQGVN 221
                      6666226789*********************9986544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2470.77
//
Query:       CCE29647.1  [L=491]
Description: related to acid phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-36  126.5   0.3    3.3e-36  125.2   0.0    1.7  2  NDT80_PhoG  NDT80 / PhoG like DNA-binding  family


Domain annotation for each model (and alignments):
>> NDT80_PhoG  NDT80 / PhoG like DNA-binding  family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.0   1.9e-40   3.3e-36       1     184 [.     120     282 ..     120     284 .. 0.95
   2 ?   -1.9   0.2      0.18   3.2e+03      63      84 ..     332     353 ..     296     372 .. 0.57

  Alignments for each domain:
  == domain 1  score: 125.2 bits;  conditional E-value: 1.9e-40
  NDT80_PhoG   1 ewvcyrRNyfqvvasfeleglslekfvkhsftilenelesgeklpikyfalkikatknseddseielvqhtakrdkgpqfaPeivalvpkelpkhqlir 99 
                 e++cyrRN++q++++++l     +k++ h         e+g++++++ +  +i+a+++ e ++++e+++    + ++pq  P + a+v +e+pk++l  
  CCE29647.1 120 ELTCYRRNLWQCSGQITL-----PKNIAHLKD------EQGQQVTVDALSASITAVESIE-GKPTEIIN-IPWKSSNPQTGPGEDAKVAGEPPKIPLEL 205
                 68****************.....777887777......9********************7.********.6888999********************** PP

  NDT80_PhoG 100 easnvrnesklkkfdeikkvarfeRlqFksatannkrrkq.qrffkLvvkllaivekeeskgteikiaelespplIVRGrsPsnye 184
                 +++++ +        +++ +++++RlqFk+atann+rrk+ q++++++ +l+a   k +s +++ikia ++s p+IVRGrsP+n++
  CCE29647.1 206 STAQEADD------IRVTLPVSWKRLQFKHATANNGRRKGlQQHYVVHMNLMA---KSKSSNDTIKIAHIQSGPVIVRGRSPRNFD 282
                 ***99999......469***********************************9...89***************************7 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.18
  NDT80_PhoG  63 seielvqhtakrdkgpqfaPei 84 
                 +++e + h++k++++pq   + 
  CCE29647.1 332 TPTEWFTHSQKQQQPPQSMSKS 353
                 3444455655555555544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3346.29
//
Query:       CCE29648.1  [L=445]
Description: related to N-acetylglucosamine-6-phosphate deacetylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-11   43.5   0.0    7.8e-11   41.9   0.0    1.8  1  Amidohydro_1  Amidohydrolase family
      3e-10   40.2   0.0    2.8e-08   33.7   0.0    2.4  2  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   8.7e-15   7.8e-11       1     324 [.      69     413 ..      69     433 .. 0.68

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 8.7e-15
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH.............HHHHHHH.HHHTSSSEEEEEEES CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst.............giealle.aaeelplglrilggk 83 
                   iv PG+I  ++ + +++++++    +l++ + +   ++   + +++ G+t+ + +++ + +             g ++  +  ae+  lg +++g++
    CCE29648.1  69 IVSPGMIECQLNGAFGFNFST----LLDDMSRYGKKVREINRLLVQTGVTSYLPTITSQRPelyqkalpflgpsGRNRDSQdGAES--LGAHCEGPF 159
                   577888888888888887555....4455555555555556666788999999999888778889988888755444444434555..499999999 PP

                   SEGGSGCCCSHHHHHHHHHHHHHHHHHHCTTTCEE.EEEEECGTCCSHHH....HHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETT CS
  Amidohydro_1  84 vsldrgsaetskasreklkagaaetikgkadgvvk.valapheapafsde....elkealkeakkrdlpvaiHaletkgevedaeaafgetiehgth 175
                   ++++ +++ ++ +++ + ++ a++  +   + + +  +        ++++    ++ +++ e +     +  +++++++++e+a++a+  ++   th
    CCE29648.1 160 LNPT-KNGVHDVDVMLEARRFADIEACYGVENLHSwREGEATRVKMVTAApergQMMKLIPELAS--RGIIYSIGHSEATYEEASEAISQGASMITH 253
                   9999.888888888888888775555544333333333333333333333557755555544444..356667789999999*************** PP

                   TTSTCC................HHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHH............SEHHHHHHHHHHHHTSCEEE CS
  Amidohydro_1 176 levaes................lglldeiklilahgvhltpteaellkerlkeagvahcpfsnsi............lrsgrealrkaldeGvkvgl 244
                   l +a+                   l +++  ++ +g+hl+pt++++   ++  +g  ++ ++ +              ++ +    + +++G k  l
    CCE29648.1 254 LFNAMRplhhrnpgvfgvlgkaETLTRPYFGVISDGIHLHPTTVKIAF-NAHPDGFILVTDAMHLaglpdgtypwmnGGQMC----NIVKKGSKLLL 345
                   ***************88877777777777777********99444422.223555555555555555555555543144444....44455666666 PP

                   EEECTTSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGG CS
  Amidohydro_1 245 gtDgaasgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaa 324
                      ++ +g+s++l+e++ + l             g s+ +al+ +T  +A  lg+ + +G +e+G dADlv++     ++
    CCE29648.1 346 ENSDVIAGSSITLIECVNNFL----------RWSGASIPQALKSVTSTPAAMLGVQSSKGILEAGADADLVIFSE--DKS 413
                   54449************9999..........25679*************************************43..333 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0031        27       1      16 [.      61      76 ..      61      77 .. 0.93
   2 !   33.7   0.0   3.1e-12   2.8e-08     408     472 ..     371     433 ..     363     434 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0031
  Amidohydro_3  1 eviDakGrlvlPGFvD 16
                  e++D+ Gr+v PG+++
    CCE29648.1 61 ETVDLGGRIVSPGMIE 76
                  69************97 PP

  == domain 2  score: 33.7 bits;  conditional E-value: 3.1e-12
  Amidohydro_3 408 lsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaearvrltvvdGrvv 472
                    s+ +al+ +T++pA++lg +  kG Le+GadADlv+++ d  +   +   + + +++++ G  v
    CCE29648.1 371 ASIPQALKSVTSTPAAMLGVQSSKGILEAGADADLVIFSEDKSATGSA--PQLVLEEVWKFGSRV 433
                   6899***********************************887777765..566688888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3327.71
//
Query:       CCE29649.1  [L=1252]
Description: uncharacterized protein CPUR_03496 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-55  187.5   0.0    4.7e-55  186.9   0.0    1.3  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase
    9.4e-09   35.5   0.0    2.5e-08   34.1   0.0    1.7  1  rve       Integrase core domain


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.9   0.0   5.2e-59   4.7e-55       2     234 ..     762     993 ..     761    1002 .. 0.94

  Alignments for each domain:
  == domain 1  score: 186.9 bits;  conditional E-value: 5.2e-59
       RVT_2   2 tyrlvslPkdrkaigsrWvftkkkddl.kevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkq 99 
                 t++ v  P++   ++ +Wv+t+k +   +  ++karlva+Gfsq+ g+dyd++faP +r+d++rL+la++aee+   hq d++ af ++el+e +y+k 
  CCE29649.1 762 TFQEVVPPRGANIVSCKWVYTIKLKVDgSIERFKARLVARGFSQVHGQDYDQTFAPTVRMDTLRLFLAVTAEEDDECHQYDIKNAFTESELKEIIYLKA 860
                 67778889999************87664778******************************************************************** PP

       RVT_2 100 PpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakkfklkdlgk 198
                 P G  i   ++  ++  kslyGlkqa++ Wn+ i++ L   gf +s a   ++++++++ +l+  +yvdd++ a+  +++l+++ ++l+++f+ k+lg+
  CCE29649.1 861 PEGVSIK--KGLFWQALKSLYGLKQAARDWNRLIKDELVRWGFMQSAADPCMFTHSKTSVRLL--VYVDDIVAAARTTRELDGFWRKLSARFNAKNLGE 955
                 ******9..99*********************************************8888887..5********************************* PP

       RVT_2 199 vskfLGieiaq..eaggiklsladyiakvvkkfeltda 234
                 ++k LG  +++  ++ ++++ +++y+++v+++f++t+ 
  CCE29649.1 956 IEKILGARVTRdrKTRTLEIDQEQYLTSVLDQFGITKE 993
                 *********985567788899**************975 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   2.7e-12   2.5e-08      11     116 ..     211     315 ..     202     317 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 2.7e-12
         rve  11 Dvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdnGkv 108
                 Dv   ++ + +g + y+l ++d ++r  + ++l+ ++ a ++l+++++ ++   g++++rv+sDn++e   ka+ ++  + g+  + t  +++++nG +
  CCE29649.1 211 DVAgPFPTSIRG-NRYFLLIIDICTRKEWLIPLRLKSEAYQALKIWKVSAELETGEKVKRVRSDNAPELL-KATNDWKVEEGVLAQSTTIASSHQNGPA 307
                 555556644444.89****************************************99*************.**************************** PP

         rve 109 Erfhrtlk 116
                 Er+++t++
  CCE29649.1 308 ERAIQTVE 315
                 *****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 8637.60
//
Query:       CCE29650.1  [L=927]
Description: related to beta-N-acetylglucosaminidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-61  206.9   0.0    6.5e-61  206.4   0.0    1.2  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    0.00093   19.4   0.0     0.0074   16.5   0.0    2.2  2  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.016   15.2   0.0      0.028   14.4   0.0    1.3  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
      0.027   13.4   0.0      0.042   12.8   0.0    1.2  1  Peptidase_C6     Helper component proteinase


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.4   0.0   1.5e-64   6.5e-61       2     319 .]      17     345 ..      16     345 .. 0.93

  Alignments for each domain:
  == domain 1  score: 206.4 bits;  conditional E-value: 1.5e-64
                    HHHHHHHTEE-B-SE-S--HHHHHHHHHH--SEEE--GGGTSSHHHHHHHHHHHHHH-SS....S--EEEE---BTTB---.SSS..---S-HHHH CS
  Glyco_hydro_3   2 ldekigqLlvvevseekkseeaaellkkyqvGgiilfaenledtkqleelieaarqaseksrlgiPlllavDqegGlvqrl.geg..tlfPsalal 94 
                    ld  igq+ ++   +++   ++++l++++++G+iil a+nl++ +++++l++ ++   ++s  + Pll+a Dqe+G v+ l  e     fPsa++ 
     CCE29650.1  17 LDWAIGQMMIMGWDGTQVTPQIKSLIEDNHLGSIILTAKNLKSAQETAQLVQELQIIAKNSGHPHPLLIALDQENGGVNSLfDEDyvCQFPSAMGV 112
                    6788**********************************************************************988776614446789******* PP

                    HHHT-HHHHHHHHHHHHHHHHHHT--EE---B-----STTSS.SGGGSS-SSHHHHHHHHHHHHHHHHHTT-EEEEEEETTGTT-S.SETTTSEEB CS
  Glyco_hydro_3  95 aatssldlikelgriiakelralgididfaPvvdvnrdprng.igvrsFsedpelvaalaaamvkGlqgagvaatvKHFpghGdga.vdshkelpt 188
                    aat   +l++e+ +++a e++a g+++ ++Pv+dv ++ +    gvr+ ++dp+ v++++ a + G+++ag+a+++KHFp +G+ + + s++++p 
     CCE29650.1 113 AATGRIELAYEISKATATEISACGVNLMLGPVLDVLNNTKPQpLGVRATGDDPQEVSQYGLAALSGVRDAGLATAGKHFPSYGNLDfQGSNLDVPI 208
                    ***********************************98887655****************************************98735699***** PP

                    ----HHHHHHTTHHHHHHHH.HTT-SEEEE--..-B-TTT---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SB CS
  Glyco_hydro_3 189 vdhseeelrevdlvpfqaai.eagvdsVMtaH..vqfpaldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadrggkeeavvlaLkAGvDi 281
                    ++++ eel    lvpf++ai   ++d+  ++   +   +++ + a +s +++ d+LR+elGF Gv +s  l m++++   g ++ vv+a++AG+D+
     CCE29650.1 209 ITQTLEELSLSALVPFRNAIaSGKLDAMFVGGcgISNASMNVSHACLSDQVVEDLLRNELGFTGVAISECLEMEALSHDLGVQNGVVMAVEAGCDL 304
                    ********************77788887776422666778888***************************************************** PP

                    EES-S---SG...HHHHHHHHHTTSS-HHHHHHHHHHHHHH CS
  Glyco_hydro_3 282 lLvpeertse...ikalkkavkeGeltearidesvrrvlrl 319
                     L++ +++++   ik+lk   ++G +t++ri  s+rr+l+l
     CCE29650.1 305 VLLCRAYDVQleaIKGLKLGYDNGIITKQRIFTSLRRILHL 345
                    *******9998889999999******************975 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.7e-06    0.0074      26      97 ..     643     710 ..     612     716 .. 0.74
   2 ?   -0.6   0.0      0.33   1.5e+03      26      55 ..     807     838 ..     784     896 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.7e-06
                     HHHHSTTC.EEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEE CS
  Acetyltransf_1  26 esfsleae.gllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikki 97 
                     +    ++e +++v  +  g l Gf+s + +      +++i  l V+p+ r+  +G+ L + +++   e+ g++k+
      CCE29650.1 643 PN---IEEnHFVVrNSSTGALYGFVSTYFVGG----HGIIGALLVDPSKRNVSIGRSLHKRALKSIGEQkGLEKV 710
                     22...444366665555599*****9999988....9*************************9887777687886 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.33
                     HHHHSTTCEEEEEEET..TEEEEEEEEEEEET CS
  Acetyltransf_1  26 esfsleaegllvaeed..geliGfisllkipd 55 
                       +s+ + +++v  +d  g l+G++ ++ +  
      CCE29650.1 807 RALSESNTCGVVRAKDpfGSLVGTVIICRRAS 838
                     22444555888866666999999998887766 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   6.3e-06     0.028     110     179 ..     527     594 ..     502     613 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.3e-06
                      HTTSSEEEEEEESSGG--TTTGTTTEEEEEE-S--GCCHHHHHHHHHTTSS---B--SS-EESSSGGG.. CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 110 aanknvvvvlqsggpvavepwkeenvkAilaawlpGqegGtaiadvLfGdvnPsGkLpvtfpksledlpd 179
                      + nk+  +v+  ++p++ + + ++++   + ++   + +  a+++vL+G+  P+G +p t+ ks + l++
       CCE29650.1 527 KGNKKQLIVVAVSSPYDFA-M-DKSIGTYICTFDFTETALSALVRVLVGEIVPKGSMPGTVRKSKKVLKS 594
                      4567778888899999994.4.679**************************************9986633 PP

>> Peptidase_C6  Helper component proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.3e-06     0.042     272     393 ..     661     792 ..     624     801 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.3e-06
  Peptidase_C6 272 ysisCktarDGskilstlyl.ptkkhvriarsednkqvplpksddellyvakeGYCYinvfLailvgiieedeaefyk..........elidklvkk 357
                   y    +  + G  i + l + p+k+ v i+rs  ++ +  + ++++ l  +k G C+  vfL + ++i  +  +e++           +l +++++ 
    CCE29650.1 661 YGFVSTYFVGGHGIIGALLVdPSKRNVSIGRSLHKRALK-SIGEQKGLEKVKIGMCFPGVFLGVPLDIEANTVKEWFSnsgwdtqfprRLTNMIIND 756
                   555556666677777765433899********9998886.67888888999*****************999999999889999999999******** PP

  Peptidase_C6 358 LGkWPtlkdlavellaislyypkvrdaelpiiLvdh 393
                   L +W     l+  l++is+ +  +++ e +  + +h
    CCE29650.1 757 LPNWTSPDGLLQRLQTISISFDLIHGLENAECVSHH 792
                   **************************9999887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 6549.81
//
Query:       CCE29651.1  [L=456]
Description: uncharacterized protein CPUR_03498 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-47  161.5   0.0    1.5e-47  161.5   0.0    2.3  3  RXT2_N    RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.0   8.3e-52   1.5e-47       1     156 []      36     177 ..      36     177 .. 0.99
   2 ?   -2.1   1.5      0.19   3.4e+03      57      75 ..     267     285 ..     234     314 .. 0.52
   3 ?   -3.6   0.2      0.58     1e+04      71      71 ..     433     433 ..     396     447 .. 0.53

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 8.3e-52
      RXT2_N   1 tNRGnKLkkkaefvhegrLnsskgdeelkkkveyngserkilsrnpierskrkkkekekeekeeeeedeegdeededdddee....eaeaaeenpykkv 95 
                 tNRG+KL+k+a+f h+g+L+++++ +++k++vey+g +r+i++rnp+++                  d+eg+e+++ddd ++    e +aa++npy ++
  CCE29651.1  36 TNRGHKLQKRARFAHKGQLAPAASSSAYKQTVEYAGVRRSIVYRNPPLI------------------DDEGYEVSSDDDADRigdaELAAADLNPYGNI 116
                 8************************************************..................************999**99899********** PP

      RXT2_N  96 rleelLaPltspsdlithpslsrtykskaLteLalqlieliekEqeslvklkkLlevllGd 156
                 +le++LaPlts+sdl++hp+ls++++sk+LteL++q++++++kE++sl+++++Ll+ l+Gd
  CCE29651.1 117 HLEHVLAPLTSASDLPQHPTLSKPFTSKTLTELITQSCKIMHKENQSLWQVRRLLTSLCGD 177
                 ************************************************************9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.19
      RXT2_N  57 kekeekeeeeedeegdeed 75 
                 +e+++k+  e+ e++d++ 
  CCE29651.1 267 RESQSKQWPENGEKQDDVP 285
                 2222222222222222222 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 0.58
      RXT2_N  71 g 71 
                 +
  CCE29651.1 433 K 433
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3757.01
//
Query:       CCE29652.1  [L=210]
Description: probable OPI3-methylene-fatty-acyl-phospholipid synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-29  101.6   2.2    7.4e-29  100.3   2.1    1.7  2  PEMT        Phospholipid methyltransferase
  ------ inclusion threshold ------
      0.077   13.0   0.2       0.13   12.2   0.2    1.5  1  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
       0.13   12.7   0.5       0.48   10.9   0.1    2.0  2  ICMT        Isoprenylcysteine carboxyl methyltransferase (ICM


Domain annotation for each model (and alignments):
>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.63   3.8e+03      77     103 ..      25      51 ..      20      54 .. 0.80
   2 !  100.3   2.1   1.2e-32   7.4e-29       4     105 ..      96     196 ..      93     197 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.63
        PEMT  77 llallvllvylialkfvEephlakiYg 103
                  +a+ +l+++++a++ + +++l +++g
  CCE29652.1  25 SVAFNPLFWNIVARQEYHNKVLTELFG 51 
                 567788899999999999999999887 PP

  == domain 2  score: 100.3 bits;  conditional E-value: 1.2e-32
        PEMT   4 ilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvylialkfvEephlakiY 102
                 ++++ l+a+g++lv+ss+++lg+ gtf+gd+F+ l d++vt+++++++  P+y+gst++flG+aL+ g++ag+l++++v+lvy ial+ +E+p++a iY
  CCE29652.1  96 AAAYTLLAAGNTLVISSTWRLGIRGTFLGDYFGYLLDEMVTGFPFNVTACPMYLGSTMSFLGTALLLGKPAGILVTAWVYLVYVIALR-YEDPFTAGIY 193
                 57899***********************************************************************************.********** PP

        PEMT 103 gkr 105
                 +kr
  CCE29652.1 194 AKR 196
                 997 PP

>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   2.2e-05      0.13      77     108 ..     135     166 ..      91     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.2e-05
  Steroid_dh  77 prgglFelvsapnyfgEilewigyalvtksla 108
                  +g+ F+  ++p y+g  ++++g al+    a
  CCE29652.1 135 VTGFPFNVTACPMYLGSTMSFLGTALLLGKPA 166
                 5899*********************9876433 PP

>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.4   2.4e+03      23      34 ..      74      87 ..      56     119 .. 0.56
   2 ?   10.9   0.1   8.1e-05      0.48      34      80 ..     133     179 ..     129     188 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.4
        ICMT 23 wttrvai..lpdhk 34
                w  +va+  +p+h+
  CCE29652.1 74 WLYKVALseQPSHP 87
                44444443333333 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 8.1e-05
        ICMT  34 klvksglykylrHPnYllfvilelatllLlcnakltalvllalvall 80 
                 ++v+ ++++++  P Yl+  +  l+t+lLl ++  + +   ++ +++
  CCE29652.1 133 EMVTGFPFNVTACPMYLGSTMSFLGTALLLGKPAGILVTAWVYLVYV 179
                 58999****************************43333332222232 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1603.89
//
Query:       CCE29653.1  [L=377]
Description: uncharacterized protein CPUR_03500 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0035   17.2   0.0     0.0061   16.4   0.0    1.3  1  DUF4939         Domain of unknown function (DUF4939)
     0.0059   16.8   1.1      0.026   14.8   0.1    2.4  3  Retrotrans_gag  Retrotransposon gag protein
  ------ inclusion threshold ------
       0.16   12.2   0.6        3.1    8.1   0.1    2.4  2  HALZ            Homeobox associated leucine zipper
        7.2    6.9  11.6      0.053   13.6   3.1    2.0  3  zf-CCHC         Zinc knuckle


Domain annotation for each model (and alignments):
>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.4e-06    0.0061      23      79 ..     125     182 ..     113     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.4e-06
     DUF4939  23 rnpipfpetfd.GdtdrlpefivqtlsymlvdektfssdalkvtflitrltGealewv 79 
                 ++ ip pe++d G + +   +   +++ + ++e+ + +da +v++ ++rltG+a + v
  CCE29653.1 125 SAKIPDPERLDnGVSPKYKAWKGDMVAKLTINEDWYVTDAARVAYCLSRLTGQARDHV 182
                 567999999864778899999999******************************9876 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.97   4.4e+03      42      78 ..      25      62 ..      16      73 .. 0.69
   2 ?   -0.8   0.0      0.41   1.8e+03      26      55 ..      72     101 ..      53     108 .. 0.73
   3 !   14.8   0.1   5.9e-06     0.026       6      79 ..     173     247 ..     169     284 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.97
  Retrotrans_gag 42 pserkdqleeelsslrQ.gtesvreYvtrfktladqld 78
                    ++ + +++ ++  +l+Q  ++  ++ +++ + l  +l 
      CCE29653.1 25 QNGHIEAMAKHTNRLTQhSEMCCQDLHEQVRILTEKLA 62
                    55667777788888888666666666666666666665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.41
  Retrotrans_gag  26 sesWkdlkkaflktflpserkdqleeelss 55 
                     ++ ++ lk++f ++  + er +  + +l++
      CCE29653.1  72 ADGFRVLKDQFIQNAADLERVRSERVRLHR 101
                     678999999999999998888777776655 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 5.9e-06
  Retrotrans_gag   6 slegaAkswlkslvarsida.sesWkdlkkaflktflpserkdqleeelsslrQgtesvreYvtrfktladqlde 79 
                      l+g+A+ ++k  +  + +a + s++d+ +++ +   ++++k++++e+l++l+  +e ++ +   f +la+   e
      CCE29653.1 173 RLTGQARDHVKAARGCDGNAaFGSFTDIFAVLDQICIDPDEKNTAREKLRELQLTNEGFAAFRSAFYSLAQTSGE 247
                     689999999999998888889************************************************998875 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.059   2.6e+02      29      42 ..      48      61 ..      47      62 .. 0.92
   2 ?    8.1   0.1   0.00069       3.1       7      40 ..      75     108 ..      73     109 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.059
        HALZ 29 ekLkaelqeLkekl 42
                + L+ +++ L+ekl
  CCE29653.1 48 QDLHEQVRILTEKL 61
                78***********8 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00069
        HALZ   7 YdvLKasYdaLksdydsLkkenekLkaelqeLke 40 
                 ++vLK ++ + ++d + ++ e+ +L+ e q L+e
  CCE29653.1  75 FRVLKDQFIQNAADLERVRSERVRLHRENQDLRE 108
                 68999999999*********************98 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       3.6   1.6e+04       8      12 ..      25      29 ..      25      29 .. 0.81
   2 ?   -2.7   0.2       1.8   7.9e+03       8      12 ..     297     301 ..     296     301 .. 0.81
   3 ?   13.6   3.1   1.2e-05     0.053       2      18 .]     344     360 ..     343     360 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.6
                SSSST CS
     zf-CCHC  8 epGHi 12
                + GHi
  CCE29653.1 25 QNGHI 29
                68**7 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
                 SSSST CS
     zf-CCHC   8 epGHi 12 
                 ++GH+
  CCE29653.1 297 GTGHM 301
                 69**8 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 1.2e-05
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 +Cy CG+  Hiar Cpk
  CCE29653.1 344 ACYGCGRKDHIARFCPK 360
                 7**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3005.37
//
Query:       CCE29654.1  [L=157]
Description: uncharacterized protein CPUR_03501 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1336.02
//
Query:       CCE29655.1  [L=547]
Description: probable manganese transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-92  309.9  23.0    1.2e-90  304.1  23.0    2.3  1  Nramp     Natural resistance-associated macrophage protein
  ------ inclusion threshold ------
        3.3    8.2   8.4         15    6.1   1.4    3.3  2  DUF2768   Protein of unknown function (DUF2768)


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.1  23.0   1.4e-94   1.2e-90       3     351 ..      89     482 ..      87     485 .. 0.95

  Alignments for each domain:
  == domain 1  score: 304.1 bits;  conditional E-value: 1.4e-94
       Nramp   3 tdlqaGaqfGykLlwvlllstllaillqelsarLGlvTgkglaelirerlpkkvsillwilaelaiiatdlaeviGaAialnllf.gipllvgvlitav 100
                 td++aGa++ y Ll ++lls+l+aillq+l+++LG +Tg +la+++r+ lp++++++l++lae+aiiatd+aeviG+Aialnll+ ++pl++g+ + ++
  CCE29655.1  89 TDIAAGASYQYRLLFIVLLSNLFAILLQSLAIQLGTITGLDLASACRAFLPRWLNYFLYALAEVAIIATDMAEVIGTAIALNLLIpKLPLVAGCALSIL 187
                 9************************************************************************************************** PP

       Nramp 101 lvllllflek.....ggyrklEaliialvlvialsFiaelflvkpdwgevlkglvvPslpg..keslllavgilGatvmphnlflhsslvqerkitidr 192
                 +v+++lf+ +     +g r +Ea++++lvl ++++F ++l l+k ++gev++g + Ps +   +e+l+ a gilGatvmph l+l s +vq r ++ d+
  CCE29655.1 188 DVMIILFFYRpdramRGLRLFEAFVCLLVLGVVICFCIQLSLIKGSVGEVFRGYL-PSGKLveAEALYQACGILGATVMPHSLYLGSGIVQPRLREYDA 285
                 *******9643334489************************************99.**999999***************************99988887 PP

       Nramp 193 ....................................seke..ealkyeriDtiial.ivaflinlailivaAavly.sggkdvesledaaeaLepllGs 251
                                                     s++   + lky+ i+ ++al ++a+++n+ailiva a ly + +++ +++++++++L + ++ 
  CCE29655.1 286 nhgllpvapisgaastmttttmlttdeyndkakyvpSQAAikHSLKYSIIELALALfTFALFVNSAILIVAGASLYqNPEAAEADIFGIHDLLAKSIS- 383
                 99***********************9999877776633337889************99******************7667788***************. PP

       Nramp 252 kaasvlFaigLlaaGlsStitgtlagqyvmegflglrislwlrrlitralafvpalivilligaelelvkllvlsqvllslllPfaliplllltsskkl 350
                 +a  ++Fa++Ll +G+s+ i++t+agq+v eg++++++++wlrrlitr+++++p +i++ ++g ++  + +l +sqv+ls +lPf+++pl+++ts++k 
  CCE29655.1 384 PAVGTIFALALLLSGISAGIVCTIAGQMVSEGAINWKLKPWLRRLITRSISVTPSIIIAGAVGRTGL-NAALNASQVVLSTVLPFITLPLIYFTSRSKY 481
                 7****************************************************************99.******************************9 PP

       Nramp 351 M 351
                 M
  CCE29655.1 482 M 482
                 9 PP

>> DUF2768  Protein of unknown function (DUF2768)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   1.4    0.0017        15      27      54 ..     199     225 ..     180     227 .. 0.77
   2 ?    4.2   0.8    0.0068        61      25      51 ..     329     355 ..     323     356 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0017
     DUF2768  27 knkflkiivaliAyilllvsgliivlvV 54 
                     ++ + ++ A+++llv g++i + +
  CCE29655.1 199 DR-AMRGLRLFEAFVCLLVLGVVICFCI 225
                 44.788888999************9976 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0068
     DUF2768  25 klknkflkiivaliAyilllvsgliiv 51 
                  lk  +++ ++al++++l++ s ++iv
  CCE29655.1 329 SLKYSIIELALALFTFALFVNSAILIV 355
                 577889999***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4050.03
//
Query:       CCE29656.1  [L=452]
Description: related to LSB5-possible role in the regulation of actin cytoskeletal organization [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-22   77.6   0.0    1.4e-21   76.9   0.0    1.4  1  VHS              VHS domain
    2.2e-05   24.6   0.2    7.9e-05   22.9   0.2    2.0  1  GAT              GAT domain
  ------ inclusion threshold ------
        1.1    8.6   3.5        1.5    8.2   0.8    2.0  2  Plasmodium_Vir   Plasmodium vivax Vir protein
        3.8    7.9  19.0       0.27   11.6   6.6    3.3  3  PBP1_TM          Transmembrane domain of transglycosylase PBP


Domain annotation for each model (and alignments):
>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0     3e-25   1.4e-21       3     140 ..       7     141 ..       5     142 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 3e-25
                 HHHHHHHHHHHHT-TT-SS--HHHHHHHHHHHHCSTCHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTTTC CS
         VHS   3 sasslekliekATdeslreedlslileicDlinekeagpkeavrlikkkinsknphvallaLklldalvkNcGskfhleiaskeflnelvklilekkns 101
                 + s+++  ie+ T es + edls   ++ ++i+ + +gp ea+r+i+kk+++ + h ++++L lldal++N+Gs+f   +a++ +l++l  + ++  ++
  CCE29656.1   7 PYSAVTVTIENLTAESCPLEDLSGVPDLVEVIKLQATGPIEAARAIRKKLKYGTVHRQIRSLVLLDALIQNAGSTFQRSFADEPLLERLRVCGTSDLSN 105
                 55778899*********************************************************************************9988888888 PP

                 HCS.HHHHHHHHHHHHHHHTTT-TTGHHHHHHHHHHHHT CS
         VHS 102 klakvkkkvlelleeWadafknkpelkkisdvykllkrk 140
                 +   v++k  +l +eWa+   n p l++++ ++++l ++
  CCE29656.1 106 QA--VRNKCADLFYEWAKYA-NTPGLERVARLHRELPKR 141
                 76..************9876.*************99865 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.2   1.8e-08   7.9e-05      27      74 ..     282     328 ..     258     331 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.8e-08
         GAT  27 keLyetckamqpriqklieetadeedllaelLqlNDeLnnvlerYerl 74 
                  +  +tc+ +++++ ++i+ +++ee  la+ L +ND+L  +l  Ye+l
  CCE29656.1 282 FQHFTTCRILRRKLLRYIHLVENEE-WLARVLLANDKLVLALMAYEQL 328
                 555689*******************.9******************997 PP

>> Plasmodium_Vir  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.8   0.00033       1.5     199     309 ..      90     256 ..      81     268 .. 0.60
   2 ?    0.7   0.1      0.06   2.7e+02     221     302 ..     357     438 ..     319     445 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00033
  Plasmodium_Vir 199 kllskl.sCknk..spkeaeeklk................................qekaaeapellnkekaeqgksekslgseslssekpeark 258
                      ll+ l +C+++  s++ +++k++                                + +++       k  +e +++   + +e++ +e+++a +
      CCE29656.1  90 PLLERLrVCGTSdlSNQAVRNKCAdlfyewakyantpglervarlhrelpkrkvaiTQERS-------KVIQETNNPFGDDEEEEEAEERARALA 177
                     5777777777777766666666666666666666666666666666666444444422222.......222222222222222222222222211 PP

  Plasmodium_Vir 259 gve............................eqlvhaltsassgtgndaspesiansssslesvseelssnfirniima 309
                     + +                              ++++++s+ss  ++ + +  ++n++  + + +e+++   ++  ++ 
      CCE29656.1 178 QRQeaavpssssasaappntkaqdvwsrmaaAMDGKTKKSSSSASKSGSGHKTRGNKPKPFNFEKEKDKMSMLTAEAII 256
                     1113333444444566667777888888888888999999999999************999999999887777766544 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.06
  Plasmodium_Vir 221 ekaaeapellnkekaeqgksekslgseslssekpearkgve...............eqlvhaltsassgtgndaspesiansssslesvseelss 300
                      +  e+ + +++++++ g+ e +++s+  ++         +                 + ++       +++d++++  +++++++++ ++  ++
      CCE29656.1 357 QQDREVGGHVGSRSQDIGSAEGTDASAPPKPP--------RpavplrpavpprrphAPPIND-------DKHDDDHDGNDDDDDDDDDENPFGDE 436
                     22222344444555555555555554444443........0444455666655543222222.......34444444444444444444444444 PP

  Plasmodium_Vir 301 nf 302
                     nf
      CCE29656.1 437 NF 438
                     44 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.024   1.1e+02      25      61 ..     139     175 ..     127     189 .. 0.60
   2 ?   -0.2   0.6       0.3   1.3e+03      43      58 ..     333     348 ..     324     366 .. 0.44
   3 ?   11.6   6.6     6e-05      0.27      30      55 ..     408     433 ..     392     450 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.024
     PBP1_TM  25 asrrrrrdddyddeyddeedDdddddeeeevprkgkk 61 
                 ++r+    ++    +++ ++ + dd+eeee   ++++
  CCE29656.1 139 PKRKVAITQERSKVIQETNNPFGDDEEEEEAEERARA 175
                 4444444444455566677777777777776655443 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.3
     PBP1_TM  43 edDdddddeeeevprk 58 
                 e D d dde  e +++
  CCE29656.1 333 EADSDSDDELAEQAHR 348
                 3344444443333333 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 6e-05
     PBP1_TM  30 rrdddyddeyddeedDdddddeeeev 55 
                  +dd +dd+ d + dDddddd+e++ 
  CCE29656.1 408 INDDKHDDDHDGNDDDDDDDDDENPF 433
                 46899999888888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1127  (0.0628591); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3232.91
//
Query:       CCE29657.1  [L=29]
Description: uncharacterized protein CPUR_03504 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (29 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       143  (0.0079759); expected 358.6 (0.02)
Passed bias filter:                       84  (0.00468515); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 235.17
//
Query:       CCE29658.1  [L=292]
Description: related to transcription initiation factor IIE,beta subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-22   77.7   0.0    7.6e-22   76.8   0.0    1.5  1  TFA2_Winged_2  TFA2 Winged helix domain 2
    6.8e-11   42.3   0.0    2.2e-10   40.7   0.0    1.8  2  TFIIE_beta     TFIIE beta subunit core domain


Domain annotation for each model (and alignments):
>> TFA2_Winged_2  TFA2 Winged helix domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   8.5e-26   7.6e-22       2      61 .]     149     208 ..     148     208 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 8.5e-26
  TFA2_Winged_2   2 nkeeLlalLkkrpkaeGikvkdLkdswpdveealeeLeaegeilvlrtkkdgqpkiVfwN 61 
                    ++ +Lla+L+++++a+G++vkdLkd+wpd+ee+l  Le++++ilv+rtkkd+ p++V+++
     CCE29658.1 149 DATSLLAYLQRKTDASGVSVKDLKDGWPDCEETLASLEKQHKILVVRTKKDNFPRYVWAD 208
                    7889******************************************************97 PP

>> TFIIE_beta  TFIIE beta subunit core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.5e-14   2.2e-10       2      65 ..      71     143 ..      70     144 .. 0.93
   2 ?   -2.0   0.0      0.52   4.7e+03      17      26 ..     163     173 ..     152     201 .. 0.55

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 2.5e-14
  TFIIE_beta   2 ftqLakiveylKkkdgplsleeIlsylslqldlsdknwllleaLknnpkiey..Dpk.......kgkfsfkPl 65 
                  tq+a++veylKkk+   ++ +I ++lsl+   ++++++l++ L+ +p+i++  D++       +g + ++P+
  CCE29658.1  71 KTQMAFAVEYLKKKSDQRTVVDIIDHLSLRGYSEEHKRELANGLRGHPRIDWrpDASlseqtwkTGLYTYRPI 143
                 69***************************7777799****************888779999999*******97 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.52
  TFIIE_beta  17 g.plsleeIls 26 
                 +  +s++++ +
  CCE29658.1 163 AsGVSVKDLKD 173
                 25666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2364.80
//
Query:       CCE29659.1  [L=141]
Description: probable cytochrome b5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-23   80.4   0.1    1.1e-22   79.9   0.1    1.2  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain
  ------ inclusion threshold ------
      0.057   13.4   0.0      0.094   12.7   0.0    1.3  1  U62_UL91  Functional domain of U62 and UL91 proteins


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.1   1.2e-26   1.1e-22       2      73 ..       9      79 ..       8      80 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 1.2e-26
                HHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEEE CS
      Cyt-b5  2 leelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkylvGkl 73
                 +++++hn+k+d++v+i++k+YD+ +f+++hpGge+++l+ aG+Dateaf++v hs++ a++ l+k  vG+l
  CCE29659.1  9 YQDVAEHNTKKDIYVVIHDKIYDCAQFIDEHPGGEEVLLDCAGQDATEAFEDVGHSDE-ARETLDKIQVGVL 79
                689****************************************************999.89999***99998 PP

>> U62_UL91  Functional domain of U62 and UL91 proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.1e-05     0.094       1      36 [.       1      37 [.       1      44 [. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
    U62_UL91  1 mnslLaelkddfeacetkeDlFkii.DklsknfnFlv 36
                m s L    +d   ++tk+D++++i Dk++   +F+ 
  CCE29659.1  1 MSSTLELTYQDVAEHNTKKDIYVVIhDKIYDCAQFID 37
                788888888999**********98879***9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1158.00
//
Query:       CCE29660.1  [L=242]
Description: probable actin-capping protein alpha-2 chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-79  266.2   0.0    7.7e-65  219.0   0.0    2.0  2  F-actin_cap_A  F-actin capping protein alpha subunit
  ------ inclusion threshold ------
      0.018   14.9   0.0      0.058   13.3   0.0    1.8  2  ACAS_N         Acetyl-coenzyme A synthetase N-terminus


Domain annotation for each model (and alignments):
>> F-actin_cap_A  F-actin capping protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   4.5e-16     4e-12       1      56 [.       7      62 ..       7      64 .. 0.95
   2 !  219.0   0.0   8.6e-69   7.7e-65      88     265 ..      64     235 ..      61     236 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 4.5e-16
                   HHHHHHT--TT-HHHHHHHHHCC-S-CCCCTTTHHHHHHHHHHHHT-EEEETTE.. CS
  F-actin_cap_A  1 asslllqsPpgelneVlkDlrallsddskleealaealeeyneeqlvtvelpgsse 56
                   +s++++ +Ppgel++V++D++al++ +s++ ++l++a+e+yneeql+tv+lpg s+
     CCE29660.1  7 VSRFVEGAPPGELADVVADIKALTGFSSDVVSKLRPAFEKYNEEQLATVKLPGGSQ 62
                   689**********************999999*********************9865 PP

  == domain 2  score: 219.0 bits;  conditional E-value: 8.6e-69
                    EEEEEEE--S-GGGHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEETTEEEEEEEEEEEEEEGGGTEEEEEEEEEEEESSEEEEEEEEEEEEEE-SS CS
  F-actin_cap_A  88 kasdvesveleseleelrkalekalekYvkehYpsgvasvypkeeeeekelaiiivgnkynpsnFwnGrwrseytvdsssktleGkikvqvHYyEd 183
                    kas+v+s+ le  + +l k+  k+l +Yvkeh+ + + +vyp  e+++k +a+ iv+nky+p+nFwnGrwrs y++d+ s++leG+ikv+vHYyEd
     CCE29660.1  64 KASAVQSHVLEGAQADLVKSTLKSLGAYVKEHFANAALGVYP-IESDSK-IAVAIVANKYSPNNFWNGRWRSLYVFDPVSGSLEGSIKVDVHYYED 157
                    899**************************************9.667888.********************************************** PP

                    EEEEEEEEEEEEEEEE--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-SS-TTSS---CCHHTXXXXXXXX CS
  F-actin_cap_A 184 GNVqlktskevseslsvsseessakeivklikeaenkyqeeLnesyeeLsekafkaLRRqLPvtrqkidWdkvlnyklgqdl 265
                    GNV+l t+k+v+ s++    + +   i+k i+++e+kyqeeLn+s+ +Lse afk+LRRqLPvtrqki+Wdkv++y+lgqd+
     CCE29660.1 158 GNVRLLTNKPVTVSIP----SGTGAGIAKEISASEKKYQEELNKSFVNLSEGAFKGLRRQLPVTRQKIEWDKVTSYRLGQDI 235
                    ***************9....99**********************************************************98 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.5e-06     0.058      12      48 ..     123     159 ..     119     164 .. 0.95
   2 ?   -3.7   0.0       1.4   1.2e+04      23      27 ..     221     225 ..     217     231 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.5e-06
                 HHHHHHHHHCCS--SB--S-SECSTTTCT-EESTT-E CS
      ACAS_N  12 peaFWaeqakeldWekpfdkvldgskgpfikWFeGGk 48 
                 p+ FW+  ++ l+ + p +  l+gs + +++++e+G 
  CCE29660.1 123 PNNFWNGRWRSLYVFDPVSGSLEGSIKVDVHYYEDGN 159
                 899********************************96 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.4
                 S--SB CS
      ACAS_N  23 ldWek 27 
                 ++W+k
  CCE29660.1 221 IEWDK 225
                 66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1797.93
//
Query:       CCE29661.1  [L=611]
Description: uncharacterized protein CPUR_03508 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-09   35.8   0.0    9.2e-08   31.9   0.0    2.2  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    1.2e-06   29.1   0.2    0.00066   20.3   0.0    2.9  3  Methyltransf_25  Methyltransferase domain
    0.00024   21.8   0.0      0.002   18.8   0.0    2.5  2  Methyltransf_12  Methyltransferase domain
    0.00095   19.8   0.1      0.024   15.3   0.0    2.5  2  Methyltransf_11  Methyltransferase domain
     0.0045   16.6   0.0        8.2    6.0   0.0    3.2  2  ATP-grasp_4      ATP-grasp domain
  ------ inclusion threshold ------
      0.059   12.9   0.0       0.16   11.5   0.0    1.7  1  MTS              Methyltransferase small domain
       0.11   12.6   0.1       0.82    9.7   0.1    2.4  1  ATP-grasp_3      ATP-grasp domain
       0.16   11.4   0.0       0.26   10.7   0.0    1.2  1  Tax              HTLV Tax


Domain annotation for each model (and alignments):
>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.1   2.2e+02      34      67 ..     119     155 ..      91     162 .. 0.80
   2 !   31.9   0.0   4.1e-11   9.2e-08      61     177 ..     179     305 ..     173     321 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.1
                      HC-SSEEEEESSSSTTTTE...EEESSGGGHHHHHHH CS
  Dala_Dala_lig_C  34 elgypvfVKpareGSSvGv...skveseeelkeaiee 67 
                         +p+fVKp     S  +   s ++++eel++a+++
       CCE29661.1 119 VERFPLFVKPGFGCASQLIderSVCRNQEELESALRR 155
                      5579******999999877333568999999999876 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 4.1e-11
                      HHHHHHHHHTT-SCEEEEE--ESEEEEEEEEETSS.CEEEEEEEEE-SS......SSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHH CS
  Dala_Dala_lig_C  61 lkeaieeafkydekvlvEeaiegreievavlgnek.levsevgeivvkk......gfydyeakysddkaqlevpaklekeveekiqelalkayk 147
                      +++ +e+a +  e+++v e+ieg++  + v++ ++   +++  + ++kk      +f  ++ k+ + + +  ++ + ++   e++q++a++a++
       CCE29661.1 179 YARSLEAAGRSSEDIVVQEYIEGQDYGCVVVQLGQsCVALTPLAYRMKKplpqkeQFLTFDGKFDEGTYMELLRKEDDAVLFEHLQQAAIEAFA 272
                      5677999***********************9966536677777777777788889*********656666666777777788************ PP

                      HTT--SE...EEEEEEEETTTEEEEEEEESS-- CS
  Dala_Dala_lig_C 148 aldlrGl...aRvDfflteegeivlnEvNtlPG 177
                      + ++r     + vD+  t +g++++ EvN+ P 
       CCE29661.1 273 VSSCRKNntgCDVDLRATPDGQVFVIEVNPQPA 305
                      ****9643337899999*************995 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         8   1.8e+04      78      93 ..     145     160 ..     142     162 .. 0.80
   2 ?    5.6   0.0     0.012        27       1      18 [.     392     409 ..     392     423 .. 0.85
   3 !   20.3   0.0   2.9e-07   0.00066      20      80 ..     445     502 ..     436     510 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 8
                      SHHHHHHHHHHHHHHE CS
  Methyltransf_25  78 sdedlekalkeiarvL 93 
                      ++e+le al++++++L
       CCE29661.1 145 NQEELESALRRMHEAL 160
                      5678999999999988 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.012
                      EEEET-TTSHHHHHHHCT CS
  Methyltransf_25   1 vLdlGcGtGrltlalakr 18 
                      + dl+cGtG + + la+ 
       CCE29661.1 392 IFDLACGTGVVGKILAQS 409
                      78*********9999987 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 2.9e-07
                      TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHH CS
  Methyltransf_25  20 gkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsde 80 
                      g ++++g+Dis++ml+++r+    ++ln + ++  + +l    + +D vv+s al+h+++e
       CCE29661.1 445 GTYRLLGCDISSGMLDICRQTGFYDSLNQTTMHSALMNLT---EPIDHVVCSSALQHIEPE 502
                      5799******************999999999999999998...568*****989***9865 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.7   6.1e+03      64      94 ..     324     361 ..     267     363 .. 0.57
   2 !   18.8   0.0     9e-07     0.002       2      82 ..     394     503 ..     393     510 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.7
  Methyltransf_12  64 g...ssfDlvvasnvlhhl...kdir.evldnirklLk 94 
                      g   +  D+ +a+ +l h    +d r + ++++++ ++
       CCE29661.1 324 GghrALIDVYIANYLLRHSeseQDSRyAGIASAYDSMA 361
                      14445567777777777776664444455666655555 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 9e-07
  Methyltransf_12   2 eiGcGtGsllrallekl..................................pdieytgvDispsaiedakeklakrennnnnnvelealdlldl 61 
                      ++ cGtG + + l+++                                    + +++g+Dis+ ++ d  +++ +++ +n + ++    +l + 
       CCE29661.1 394 DLACGTGVVGKILAQSQrymrcsssvstashsssappkrhpngtdgtketkGTYRLLGCDISSGML-DICRQTGFYDSLNQTTMHSALMNLTE- 485
                      778888888888888888888888888888888888888888888888888899999*********.************99999999999874. PP

  Methyltransf_12  62 dggssfDlvvasnvlhhl.kdi 82 
                            D vv+s++l+h+ +++
       CCE29661.1 486 ----PIDHVVCSSALQHIePEM 503
                      ....9*************6555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.19   4.2e+02       2      25 ..     394     416 ..     393     441 .. 0.74
   2 !   15.3   0.0   1.1e-05     0.024      18      75 ..     445     500 ..     436     508 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.19
                      EET-TTSHHHHHHHHTTSEEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvD 25 
                      d++cGtG + + la+   r++ + 
       CCE29661.1 394 DLACGTGVVGKILAQS-QRYMRCS 416
                      99***********933.3555444 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.1e-05
                      T.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-C CS
  Methyltransf_11  18 g.arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhve 75 
                      g +r++g+D+s  ml+++++ +  + l+ + +++ +   ++  + +D vv+s++l+h+e
       CCE29661.1 445 GtYRLLGCDISSGMLDICRQTGFYDSLNQTTMHSALM--NL-TEPIDHVVCSSALQHIE 500
                      45799*******************9974333333333..34.459************94 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0     0.006        13       3      40 ..     122     162 ..     120     217 .. 0.68
   2 !    6.0   0.0    0.0036       8.2     127     151 ..     279     303 ..     259     307 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.006
  ATP-grasp_4   3 lPvviKPsvgffSlGV...ykinneeewkaavaaieeeleq 40 
                  +P+ +KP  g +S+ +   ++++n+ee+++a+++++e l++
   CCE29661.1 122 FPLFVKPGFGCASQLIderSVCRNQEELESALRRMHEALHE 162
                  78889999999998884444688999999999988876543 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0036
  ATP-grasp_4 127 knfpvHiElrvsedgkiipiEvnpl 151
                  +n  + + lr + dg++++iEvnp 
   CCE29661.1 279 NNTGCDVDLRATPDGQVFVIEVNPQ 303
                  66677899***************96 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.4e-05      0.16      31      54 ..     388     411 ..     375     428 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.4e-05
                 TCSEEEEET-TTSHHHHHHHHHTT CS
         MTS  31 lsgkvlDlGcGaGvlgaalakesp 54 
                 +sg++ Dl+cG+Gv+g  la+ + 
  CCE29661.1 388 FSGTIFDLACGTGVVGKILAQSQR 411
                 7899**************999765 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00037      0.82      64     157 ..     185     303 ..     113     305 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00037
                  .........EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET.............TEEEEEEES----H..HHHHHHHHHHHHTTST..T--.EEEE CS
  ATP-grasp_3  64 e........lvqefieGkplSvsllsdgekvlvlavnrqliekaeke.........fvyaGnvtpietel..keevvelaeevvekle..gla.GyvG 139
                  +        +vqe+ieG+++   ++  g+  + l+    +++k   +             G  ++   ++  +  +++l + ++e++   +++    G
   CCE29661.1 185 AagrssediVVQEYIEGQDYGCVVVQLGQSCVALTPLAYRMKKPLPQkeqfltfdgKFDEGTYMELLRKEddAVLFEHLQQAAIEAFAvsSCRkNNTG 282
                  034444466************99999887777777666666655544778877776333444444433332122223344444555533333313457 PP

                  EEEEESS....SEEEEEEESS CS
  ATP-grasp_3 140 vDlvlkd...eepyviEvNPR 157
                   D+ l+    ++  viEvNP 
   CCE29661.1 283 CDVDLRAtpdGQVFVIEVNPQ 303
                  666654444488899999996 PP

>> Tax  HTLV Tax
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012      0.26      54     126 ..     484     553 ..     451     570 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         Tax  54 wdpidgrvvssalqyliprlpsfptqrt.sktlkvltppithvspkvppaflqamrkyspyrngyleptlgdql 126
                  +pid  v ssalq++ p + sf       ++    +  it    ++p  + +++ k    + g++ p++ +  
  CCE29661.1 484 TEPIDHVVCSSALQHIEPEMFSFIMVLLfIRA----SKSITLSVEDIPDVYNENLLKAGYIKAGCMAPSINHLG 553
                 48*********************865320333....44677778899999******************986543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.21s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 4705.19
//
Query:       CCE29662.1  [L=410]
Description: probable 3-methyl-2-oxobutanoate dehydrogenase (lipoamide)E1 beta chain precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-43  146.5   0.0    9.9e-43  145.9   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
    1.8e-32  111.9   0.3    3.2e-32  111.0   0.1    1.5  2  Transketolase_C  Transketolase, C-terminal domain
     0.0012   19.1   0.0     0.0028   17.9   0.0    1.6  2  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.0   1.7e-46   9.9e-43       3     176 ..      86     261 ..      84     263 .. 0.96

  Alignments for each domain:
  == domain 1  score: 145.9 bits;  conditional E-value: 1.7e-46
                   EEHHHHHHHHHHHHHCTTTTEEEEESSTH.HHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGG..HHGGHHHH CS
  Transket_pyr   3 iawrkaeaealaellkedpevvligaDva.ggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangA..qiyadqai 96 
                   ++  +a+++al++ l+ed++v+++g+Dva gg+f  + +l +  g++rv++++++Eq+++gf +G+a++g +++++e+qF+d++ +A  q++++ a+
    CCE29662.1  86 MNLFQAINDALGTALAEDDSVLIFGEDVAfGGVFRCTMKLAETYGAERVFNTPLTEQGIVGFGIGLAAQG-MRPVAEIQFADYVFPAfdQLVNEGAK 181
                   56779*****************************************************************.8************************* PP

                   HCHHHH.HT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  97 rsgeak.gklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                    +++ +  ++++g +++r+p+g  + G   +s+++e+++++ipgl+vv+P +p+++k+ll  air  +++P+++++pk l+r
    CCE29662.1 182 LRYREGaTGVNAGsLTVRMPCGGVGHGGLYHSQSPESLFTHIPGLRVVMPRSPVQAKGLLLSAIR--SNDPCIFMEPKILYR 261
                   99987626899******************************************************..778***********8 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       2.4   1.4e+04      60      76 ..     102     118 ..      97     127 .. 0.74
   2 !  111.0   0.1   5.3e-36   3.2e-32       2     104 ..     278     383 ..     277     400 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 2.4
                      HHSEEEEEEEEESTTSH CS
  Transketolase_C  60 ktgrlvvveeavkrgGi 76 
                      + + ++++ e+v +gG+
       CCE29662.1 102 EDDSVLIFGEDVAFGGV 118
                      55667777788888886 PP

  == domain 2  score: 111.0 bits;  conditional E-value: 5.3e-36
                      EEEEEETTSSEEEEEETTHHHHHHHHHHHHHTT.TTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHH..CCCTTC CS
  Transketolase_C   2 kaeilregkdvtlvayGsmveealeAaeeLeke.gisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalae..eafdgl 92 
                      kae+++egkdvt+++yG  ++++l A++++e++ gis+e++dlrt+ p+Dket+ +sv+ktgr++vv+ea+++ G+g+evaaa++e  e f++l
       CCE29662.1 278 KAEVVKEGKDVTVISYGQPMYTCLSAVQRAEEDlGISCELIDLRTLYPWDKETVFASVRKTGRVLVVHEAMVNAGVGAEVAAAIQEdpETFARL 371
                      89************************************************************************************999***** PP

                      SSEEEEEEE-SS CS
  Transketolase_C  93 dapvkrvggpdv 104
                      +apv rv+g  +
       CCE29662.1 372 EAPVARVAGWSI 383
                      *******99865 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.4   8.6e+03       2      35 ..     166     199 ..     165     200 .. 0.63
   2 !   17.9   0.0   4.7e-07    0.0028       2      81 ..     287     364 ..     286     385 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
                 SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES CS
     PFOR_II   2 evvivamGsvagtaksavdelReegikvGllrlr 35 
                 ++v+ a+  ++++  +   +  + g+++G l +r
  CCE29662.1 166 DYVFPAFDQLVNEGAKLRYREGATGVNAGSLTVR 199
                 5555555555555555555556689999999887 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 4.7e-07
                 SEEEEE-STHHHHHHHHHHHHHHT.T--EEEEEES--BS--HHHHHHHSTT-SEEEEEE-S--TT-G-HHHHHHHHHTGGG CS
     PFOR_II   2 evvivamGsvagtaksavdelRee.gikvGllrlrtlrPFPeeelkellkkvkkvvvldrnisfgseGqlveevkaalkks 81 
                 +v ++ +G  + t+ sav+++ e+ gi+  l+ lrtl+P  +e +   ++k+ +v+v+  ++   ++  ++ ev+aa+++ 
  CCE29662.1 287 DVTVISYGQPMYTCLSAVQRAEEDlGISCELIDLRTLYPWDKETVFASVRKTGRVLVVHEAM---VNAGVGAEVAAAIQED 364
                 789*****************98765**********************************999...5777899999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2987.62
//
Query:       CCE29663.1  [L=695]
Description: related to glucan 1,3-beta-glucosidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-12   47.0   0.4    2.2e-12   47.0   0.4    1.6  2  Cellulase    Cellulase (glycosyl hydrolase family 5)
  ------ inclusion threshold ------
       0.19   12.7   3.0       0.24   12.3   0.0    2.6  2  EphA2_TM     Ephrin type-A receptor 2 transmembrane domain


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.4   2.5e-16   2.2e-12      21     250 ..     334     568 ..     320     584 .. 0.77
   2 ?   -3.7   0.8       0.7   6.3e+03     267     280 ..     639     652 ..     616     653 .. 0.83

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 2.5e-16
                 GSHHHHHHHHHHHT-SEEEEEEE.CTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS...............TTTCSSSSTTTTHHHHHH CS
   Cellulase  21 yttkalidevkdagfntvRlpvs.wgelvenapdykvdenslerveevvkyakenglyvildiHse...............egwltkadgnssedtaee 103
                 +  +++++ +++ag ++vR+p+s w   v +++ y +  +s   +   +++a + gl+v ld+H                  gwl+  dg+ + +++ e
  CCE29663.1 334 FVSEDTFKDMAAAGLDHVRIPYSyWAVEVYDGDPY-IFRTSWRYLLRGIEWARKYGLRVNLDLHALpgsqngwnhsgrlgpIGWLNGTDGQVNAKRSLE 431
                 478999****************9654444457888.77788888999******************9999977777766666666888889999999888 PP

                 HHHHHHHHHHH.HHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTBHHHHHCTSGSSSSTTEEEEEEEE CS
   Cellulase 104 ffkklwtqiAe.rykkndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpnrliivegnswsgnldgavlndPndsqdnliysvHfY 201
                   +kl + +A+ ry  ++ +  + l+NEP          + ea +v ++ + a++++R+ g + l++ +       ld+    +P+   d ++ +vH+Y
  CCE29663.1 432 IHDKLTQFFAQdRY--KNIITHYGLANEPKMT-------YLEAGDVLQWTKDAYDIVRKNGVKALVVFGD--GFMGLDKWKGLMPGY--DDMVLDVHQY 517
                 89997777776255..6667779********3.......23579*******************9999999..55556665667**65..99******** PP

                 TTTHHHTGCGSHSCTHHHHHHHHHHHHHHHH.HHTTS.EEEEEEEESSTTS CS
   Cellulase 202 gpsdfaqtefgkdltdktnlaqrledaakyl.vekgi.pviigEfGgsnad 250
                    ++ q + +++++ ++  +++ ++a++++ ++ g+ p +  E+   ++d
  CCE29663.1 518 VIFNQDQIKLSHQKKVQYACTGWTQQAQQSMdRSTGYgPTLFAEWSQADTD 568
                 97776555554445555555555555555555678999*******987665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.7
                 HTTTEEEEEEESSS CS
   Cellulase 267 ekgiswiyWslnpk 280
                 ekg +w yW+++ +
  CCE29663.1 639 EKGWGWWYWTWKTE 652
                 68899999*99876 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0   4.8         2   1.8e+04      48      48 ..      54      54 ..      10     120 .. 0.62
   2 ?   12.3   0.0   2.6e-05      0.24       5      59 ..     173     226 ..     169     234 .. 0.57

  Alignments for each domain:
  == domain 1  score: -5.0 bits;  conditional E-value: 2
    EphA2_TM 48 s 48
                s
  CCE29663.1 54 S 54
                1 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.6e-05
    EphA2_TM   5 avaglvllvilvilvlvlvrrrsknrkqksdlkskeekkeeensgk.kglktYvDP 59 
                  v+++++l+i++++++v+  + ++   +k+++ s++ +++++n+   +   tY DP
  CCE29663.1 173 GVGAVIILIIIIAVAIVVS-KNNSGGGNKTSK-SSSLEGKDPNKVPtQWKNTYLDP 226
                 5667777777666666665.555544444443.34444444444432346699999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1132  (0.0631379); expected 358.6 (0.02)
Passed bias filter:                      646  (0.036031); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 4624.97
//
Query:       CCE29664.1  [L=553]
Description: related to multidrug resistant protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-35  120.5  36.3    7.6e-35  120.5  36.3    2.0  2  MFS_1     Major Facilitator Superfamily
    1.3e-11   44.0   5.6    1.3e-11   44.0   5.6    2.5  2  Sugar_tr  Sugar (and other) transporter
    8.8e-07   27.7   2.2    8.8e-07   27.7   2.2    1.6  2  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
       0.84    9.2   2.5        1.1    8.8   2.5    1.1  1  LRS4      Monopolin complex subunit LRS4
        9.5    5.8   9.0         25    4.4   3.2    2.7  2  Saf_2TM   SAVED-fused 2TM effector domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5  36.3   2.1e-38   7.6e-35       5     353 .]     117     504 ..     113     504 .. 0.82
   2 !    5.3   1.0    0.0021       7.6     135     176 ..     501     542 ..     499     553 .] 0.81

  Alignments for each domain:
  == domain 1  score: 120.5 bits;  conditional E-value: 2.1e-38
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgagal 102
                  +++++a+si+++++   +  d++ s  +  l l+++ lg a++ ++l++ls+ +Grr+++l++ +l++++ l++  +a ++ +++v+r+l G++++a+
  CCE29664.1 117 SLCVTCASSIYTTTYA-NMEADFHNSRIVSVLGLSTFVLGIAFGPMILSPLSEFYGRRPIYLVTWTLYLIF-LIPQaVARNVATIIVFRFLDGFTGSAF 213
                 6789999********9.9******999998999999***********************************.999944366669*************** PP

       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee............k 189
                 +++++  ++d+f++      ++l+sa+  +G+ lgp+ gg++  ++ Wr+++y+l   s ++ v +++++pe++++   +++++ +            +
  CCE29664.1 214 LAVSGGTVSDLFARGALQAPMALFSASPFVGPSLGPIMGGFINYHVDWRWTYYVLLMWSGVVWVAVVMFVPETYHPILLQKKAKNLrkktgddrwtapA 312
                 ****************************************************************99999999999999999999999999999666663 PP

       MFS_1 190 gtgpaplvpawkallkdpvl.w........illialllfffgfsglltllpl.ylqevlgls....glllaglllallalvgailallagrlsdr.... 270
                  ++++++v a+++ l +p+  +        ++l++++l + ++++++  +pl +    +g++    gl  +g  +++++++g++  +l+ r+  +    
  CCE29664.1 313 DKVQRSVVRAIGQSLLRPFQlLifepmclnLCLFSAILLG-ILYLFFGAFPLvFGGANHGFNawqiGLSFTG--IMVGMVLGVMTDPLWYRVRSKlvdk 408
                 3333333333444444442222334444576667777766.6666777777758899999997777777777..7777777777755555555556555 PP

       MFS_1 271 ..........lgrrrrlllallllllaalglallavtssavllllvlvl....iGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                             +++rl  a+ + ll+ +g+++++++s ++++++v ++    + +g  +vf+s++++++d +p  +a++a++++ +++++ +a +p
  CCE29664.1 409 leaetgvqgaSEPEFRLPPAIMGSLLVPAGIFMFGWSSFPWVHWIVPIIgsciFAVGNVLVFTSIFTFLVDAYP-LYAASALAANAFVRCIFAAAFP 504
                 7777665555555************************7777777755556665889*****************8.99*************9888776 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0021
       MFS_1 135 ilgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                 +  pl+g  +++ lg++++  +la+++++++ + +++++  +
  CCE29664.1 501 AAFPLFGVQMYEKLGYQWASSLLAFLTVVMLPFPYIFFRYGK 542
                 556999999*********************998888886544 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   5.6   3.7e-15   1.3e-11      30     213 ..     127     307 ..     107     361 .. 0.77
   2 ?   -7.2  14.3         5   1.8e+04     331     437 ..     434     538 ..     427     543 .. 0.78

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 3.7e-15
                 HTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  30 knfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyis 128
                 +  ++ + +++  +s + s l +s f++G ++G +++++l++++GR++++l++ +l++i  + qa+a    +v  +iv R+l G+   ++ +++  ++s
  CCE29664.1 127 YTTTYANMEADFHNSRIVSVLGLSTFVLGIAFGPMILSPLSEFYGRRPIYLVTWTLYLIFLIPQAVAR---NVATIIVFRFLDGFTGSAFLAVSGGTVS 222
                 333333444444449999**************************************************...**************98888888888887 PP

                 TTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHH.HHGGGS---..HHHHHHTT-HHHHHHHHHH CS
    Sugar_tr 129 EiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallll.illlflPES..Prylvekgkeeeakevlak 213
                  +       a + l+  +  +G  ++ i+g ++n+  +   wr++ ++ l+++ ++  ++++f+PE+  P  l +k k  + k++  +
  CCE29664.1 223 DLFARGALQAPMALFSASPFVGPSLGPIMGGFINYHVD---WRWTYYVLLMWSGVVWvAVVMFVPETyhPILLQKKAKNLRKKTGDDR 307
                 77655555566778888888999999999999999999...***********977751566******444444444444455555555 PP

  == domain 2  score: -7.2 bits;  conditional E-value: 5
                 HHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHH CS
    Sugar_tr 331 fvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlf 429
                 +v  gi ++ +++   +  iv i++ ++f++   l +++++ +l  + +p+   ++ala  ++v  ++  +  l+  ++ e++g  +   + a+l v++
  CCE29664.1 434 LVPAGIFMFGWSSFPWVHWIVPIIGSCIFAVGNVLVFTSIFTFL-VDAYPLY-AASALAANAFVRCIFAAAFPLFGVQMYEKLGYQWASSLLAFLTVVM 530
                 4444444444444444555899*******999999999999777.7888876.567899999999*******************999999999999999 PP

                 HHHHHHHS CS
    Sugar_tr 430 iifvfffv 437
                 + f ++f+
  CCE29664.1 531 LPFPYIFF 538
                 99988885 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   2.2   2.5e-10   8.8e-07      69     233 ..     133     302 ..      97     314 .. 0.77
   2 ?   -3.8   0.3      0.88   3.2e+03     446     463 ..     488     505 ..     463     522 .. 0.69

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 2.5e-10
       TRI12  69 nilqdvgqsensslfs.tlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagp.agasplfvgelmsnktkf 165
                 n+  d  +s   s++  + + +g a   +++  l++ +grrp+ ++t  l l+  i  + a ++ t++    l g +       s   v +l++  +  
  CCE29664.1 133 NMEADFHNSRIVSVLGlSTFVLGIAFGPMILSPLSEFYGRRPIYLVTWTLYLIFLIPQAVARNVATIIVFRFLDGFTGSAfLAVSGGTVSDLFARGALQ 231
                 5555555555544432145789999999**************************************999888888764431356788999999999888 PP

       TRI12 166 lgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsai...avllivvwyyppsfaqlhgkkvrkr 233
                   + + s+   v  +l+p +g  +    +wrw +y+ ++ s +   av++ v   y p + q + k+ rk+
  CCE29664.1 232 APMALFSASPFVGPSLGPIMGGFINYHVDWRWTYYVLLMWSGVvwvAVVMFVPETYHPILLQKKAKNLRKK 302
                 888888877777777***********************999861114444444456666677777777765 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.88
       TRI12 446 vaaarpfagsiftaafis 463
                   aa  f+  if+aaf  
  CCE29664.1 488 ALAANAFVRCIFAAAFPL 505
                 346778999999999843 PP

>> LRS4  Monopolin complex subunit LRS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.5    0.0003       1.1     174     241 ..       9      75 ..       1      82 [. 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0003
                 XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.X CS
        LRS4 174 gsplsvtPsspsaqskqPsglrellkhgddTifdnvsdindddtdedsessflletiqptkstlrrsi 241
                   p + +P +p+  ++  s++  + +++d+T  +n  ++ d d d+d+++ +++++  +++  +rr+ 
  CCE29664.1   9 CPPHAQEPRAPALSRAT-SRASTAHNRLDKTRSQNGYSVDDHDYDDDDDEDDGVHSEGNAGTEARRTS 75 
                 55778889999888888.**********************************************9965 PP

>> Saf_2TM  SAVED-fused 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.3     0.012        42      30      78 ..     109     158 ..     105     167 .. 0.81
   2 ?    4.4   3.2    0.0071        25      63      88 ..     446     471 ..     440     475 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.012
     Saf_2TM  30 valllailgt.dwalkialklaggslevsfssseipeivlaiilvigvll 78 
                 ++l+++  +   +  ++++++   ++e+ f +s i++++ +  +v+g+++
  CCE29664.1 109 ITLIVSHVSLcVTCASSIYTTTYANMEADFHNSRIVSVLGLSTFVLGIAF 158
                 6777776666767777778888899*********9999999999999876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0071
     Saf_2TM  63 ipeivlaiilvigvllivvGavllil 88 
                 ++ +v +i+ +ig+++++vG vl + 
  CCE29664.1 446 SFPWVHWIVPIIGSCIFAVGNVLVFT 471
                 3669******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 3687.07
//
Query:       CCE29665.1  [L=648]
Description: related to transcriptional regulator RDS2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0014   18.6   0.0     0.0032   17.4   0.0    1.6  1  PAS       PAS fold
  ------ inclusion threshold ------
      0.015   15.4   9.0      0.015   15.4   9.0    1.7  2  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.6e-07    0.0032       6      49 ..     444     487 ..     440     491 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.6e-07
                 HHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGG CS
         PAS   6 ileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldl 49 
                 +l++  +p++v +++g++  vN++++ l+G++ e +lg+  ++ 
  CCE29665.1 444 FLQHCCAPTIVCRRSGEVAAVNKEFTALTGWTKEVLLGQEPNRN 487
                 56677789*******************************98766 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   9.0   1.6e-06     0.015       1      31 [.      57      88 ..      57      97 .. 0.86
   2 ?   -4.0   0.3       1.9   1.7e+04      30      34 ..     612     616 ..     609     620 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.6e-06
                SS-HHHHHCT---STSSSS-HHHHHCT..HHHC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkkln..leCt 31
                +aC  C + +  C  ++P C++C+k++    C+
  CCE29665.1 57 RACFACQRAHLTCGDERP-CQRCIKRGlaDGCR 88
                59****************.********766677 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.9
                 HCCCC CS
     Zn_clus  30 Ctfys 34 
                 Ct+ +
  CCE29665.1 612 CTYCW 616
                 44433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4574.97
//
Query:       CCE29666.1  [L=203]
Description: related to FMN1-Riboflavin kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-29  100.4   0.0      9e-29  100.0   0.0    1.1  1  Flavokinase  Riboflavin kinase


Domain annotation for each model (and alignments):
>> Flavokinase  Riboflavin kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   0.0     5e-33     9e-29      19     111 .]      14     151 ..       5     151 .. 0.93

  Alignments for each domain:
  == domain 1  score: 100.0 bits;  conditional E-value: 5e-33
                  TTTT--EEEEE-.S-B-G.....TSEEEEEEEE...................................EEEEEEEETTTSSE...EEEEET.T--S-- CS
  Flavokinase  19 relgfpTaNlel.ekllp.....kkGVYavrvk...................................gvaniGvrptfknk...vEvhil.dfsedl 71 
                  ++lg+pTaNl++ ++++p      +GVY+++++                                   +v++iG++p++kn+   +Evhil +f++d+
   CCE29666.1  14 QQLGIPTANLPVdSTQTPwidaiPSGVYFGYASlqnipsshaestssssgpsapapvsgigpepalfpMVMSIGYNPFYKNTvrsAEVHILhKFEADF 111
                  79*********9655556888889*********************************************************87778*****55899** PP

                  TTSEEEEEEEEEEEE----SSHHHHHHHHHHHHHHHHHHH CS
  Flavokinase  72 ygkelrvellkflRpekkFdsleaLkaqikkDvekarell 111
                  yg+++r+ +++f+R+ek++ s eaL+++i++D+++ar++l
   CCE29666.1 112 YGAHMRLLIVGFIREEKDYVSREALIEDIEEDCRVARRSL 151
                  *************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1564.02
//
Query:       CCE29667.1  [L=251]
Description: uncharacterized protein CPUR_03514 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-11   44.6   0.0    2.3e-11   43.6   0.0    1.4  1  Epimerase       NAD dependent epimerase/dehydratase family
      2e-10   40.9   0.0    3.1e-10   40.2   0.0    1.3  1  NAD_binding_10  NAD(P)H-binding
    2.5e-07   30.4   0.0    8.5e-07   28.6   0.0    1.6  2  HIM1            HIM1
    3.2e-06   26.9   0.0    6.1e-06   26.0   0.0    1.4  1  NmrA            NmrA-like family
  ------ inclusion threshold ------
      0.051   12.6   0.0       0.17   10.9   0.0    1.9  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
       0.15   10.5   0.0       0.21   10.1   0.0    1.1  1  DUF687          Protein of unknown function (DUF687)


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   7.8e-15   2.3e-11       2     192 ..      12     183 ..      11     202 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 7.8e-15
                 EEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekg.ye.vigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnl 98 
                  V+G tG++Gs ++ ++ +++ y+ v++++r+  + ++ +l+  ++++ d t+ +     ++   p+ v+ +   g+ +a +   +  ++++  ++ +l
  CCE29667.1  12 AVIGSTGLVGSLILSNMIAHDmYKpVHTITRRAPKTASPNLN--SVIDSDTTKWATALSTLSP-SPHSVFSA--LGTTRAAAGGVENQWKIDHDLNIEL 105
                 59********************999*******5555555444..99******99977777775.99999999..************************* PP

                 HHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHH CS
   Epimerase  99 leaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirk 192
                 ++aa++agvk ++f+sS    G +++ p         + + spYa  K  +e  v+++  ++   aiil++  + G+r++ +  ++++  ++r+
  CCE29667.1 106 AKAAKDAGVKTFVFVSS----G-GTRLP--------AVSTLSPYAKMKNGVEDAVRDMGFEH---AIILKPGMILGEREQSRLAEGLFQSVVRS 183
                 *****************....4.23323........23778****************99999...8***********95555566666666665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0     1e-13   3.1e-10       1     150 [.      15     167 ..      15     190 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1e-13
                     TTTSHHHHHHHHHHHHC-.T-EEEEEETTHHHCHHHHCTTTC.EEEE--TT-CCHHHHHHT.T-SEEEES---TCC...........HHHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtalvRnpeklaeleaeegl.evvegdvtdvedlaealk.gadaVvsalggggk...........deegakni 81 
                     G tG vG+l+++  +a++   +v+ ++R++ k+a    +++l +v++ d t+ ++  ++l+     V+salg+++            d++  + +
      CCE29667.1  15 GSTGLVGSLILSNMIAHDmYKPVHTITRRAPKTA----SPNLnSVIDSDTTKWATALSTLSpSPHSVFSALGTTRAaaggvenqwkiDHDLNIEL 105
                     89***************98778999999999988....3555268999999865555555515569*****77666566656666677777**** PP

                     HHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEE.EEEEE-CEE-ST CS
  NAD_binding_10  82 vdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldw.TivrpggLtdep 150
                     ++aak agvk fv+vs+ g++      ++ +  ++l++y++ k+  e+ +r+ g++   i++pg++  e 
      CCE29667.1 106 AKAAKDAGVKTFVFVSSGGTR------LPAV--STLSPYAKMKNGVEDAVRDMGFEHaIILKPGMILGER 167
                     *******************98......4444..6899******************973667777776554 PP

>> HIM1  HIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.35     1e+03       3      19 ..      54      70 ..      52      79 .. 0.85
   2 !   28.6   0.0   2.8e-10   8.5e-07      51     146 ..      77     170 ..      65     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.35
        HIM1  3 qliiedSekWpellpei 19
                 +i +d +kW++ l+++
  CCE29667.1 54 SVIDSDTTKWATALSTL 70
                58999******999876 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 2.8e-10
        HIM1  51 listLGstsaeekkskvkrkfvdYeLnlklakeFantedKklvivTsfNnkl..lskvspYfrtKlklEndLktklepklkeLviLRPGPlvGehtkp 146
                 + s+LG+t+a +     ++ ++d++Ln++lak+      K  v v s    l  +s++spY ++K  +E++++      +++ +iL+PG ++Ge  + 
  CCE29667.1  77 VFSALGTTRAAAGG-VENQWKIDHDLNIELAKAAKDAGVKTFVFVSSGGTRLpaVSTLSPYAKMKNGVEDAVRDM---GFEHAIILKPGMILGEREQS 170
                 67899999985554.455889**************************87764339**************998754...589************98764 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     2e-09   6.1e-06       2     139 ..      12     157 ..      11     162 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2e-09
                 EESSTTSHHHHHHHHHHHHHT-..EEEEEES-S-SHHHHHHHHSTTEEE.ES-TT-HHHHHHHHTT-SEEEE---GG...........S-HHHHHHHHH CS
        NmrA   2 lviGaTGrqGksvvrallkagh..kvralvRdtkselakslkeaGvelv.kgdlddkeslvealkgvdvvfsvtgfy...........skeiedgkklv 86 
                 +viG+TG  G+ + + +++++   +v  ++R   + ++ +l    + ++ ++ ++    l+++    + vfs++g++           +   +   +l+
  CCE29667.1  12 AVIGSTGLVGSLILSNMIAHDMykPVHTITRRAPKTASPNL----NSVIdSDTTKWATALSTLSPSPHSVFSALGTTraaaggvenqwKIDHDLNIELA 106
                 79************999996543379999998877777766....56884444566677888888888889888877888888865333333445679* PP

                 HHHHHHS-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEE CS
        NmrA  87 dAakeaGvkhfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfv 139
                 +Aak aGvk f++ s g       a+    p  ++K  +e++vr +g+ + ++
  CCE29667.1 107 KAAKDAGVKTFVFVSSGGTR--LPAVSTLSPYAKMKNGVEDAVRDMGFEHAII 157
                 *************9999888..4455556677789*************98876 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.6e-05      0.17       1     118 [.      12     124 ..      12     158 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.6e-05
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihla.slvdvagkltedeimkvnvkGTrn 98 
                 +v+G++G +G+ + ++++  +  k v+ +  r  p++     + n ++vi  D t+ ++    l  +   ++ a + +  a     ++  k+      +
  CCE29667.1  12 AVIGSTGLVGSLILSNMIAHDMYKPVHTITRRA-PKT----ASPNLNSVIDSDTTKWATALSTLSPSPHSVFSAlGTTRAAA-GGVENQWKIDHDLNIE 104
                 59*************************996554.443....35555567999999988877777766555544313333322.2333335555555567 PP

   3Beta_HSD  99 vleacvkagvrvlvYtSsae 118
                 + +a+++agv+++v++Ss +
  CCE29667.1 105 LAKAAKDAGVKTFVFVSSGG 124
                 89999999999999999965 PP

>> DUF687  Protein of unknown function (DUF687)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   7.1e-05      0.21     175     255 ..     124     205 ..     115     214 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.1e-05
      DUF687 175 Gftasnvttl.pYssgaegvflpsvrdpsfewalrlefmrlagiaelsqlsgpsvddsees.ssreiavvvelsedssaftrl 255
                 G++   v+tl pY++  +gv    vrd  fe+a+ l+   + g +e+s l ++ ++   +s +++  ++   +++d ++ +r+
  CCE29667.1 124 GTRLPAVSTLsPYAKMKNGVE-DAVRDMGFEHAIILKPGMILGEREQSRLAEGLFQSVVRSlGKVSAGLQNTIGQDAEVIARA 205
                 566667999978*********.9**********************************99999999999999999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1798.34
//
Query:       CCE29668.1  [L=405]
Description: uncharacterized protein CPUR_03515 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-10   41.2   0.2    4.6e-10   40.3   0.2    1.4  1  Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
    0.00016   22.0   1.7     0.0003   21.1   1.7    1.4  1  Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
  ------ inclusion threshold ------
        5.9    6.2  10.3       0.15   11.5   1.8    2.0  2  DUF3246         Protein of unknown function (DUF3246)


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.2   7.7e-14   4.6e-10       1      74 [.      58     131 ..      58     141 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 7.7e-14
  Myb_DNA-bind_3   1 eWspeeekilvdllveqvkkgnriekktfkkeawkeileefnaktgakytkkqlknrlkklrkeyklvkeller 74 
                     +W++++ ++l+  l+e +++g ++++++fk    k++ ++++++ ga ++ kq++++++ ++ ++k +++ l r
      CCE29668.1  58 RWNEATMACLCSCLIELANAGKQTDNQGFKAADLKDVSRTLQEQCGADFDAKQIRSKWDDMKAKWKEWCRHLGR 131
                     5********************************************************************97755 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   1.7     5e-08    0.0003       3      81 ..      58     135 ..      56     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 5e-08
                     SS-HHHHHHHHHHHHH...HHHHHHH..SS--HHHHHHHHHHHHHH.C----HHHHHHHHHHHHHHHHCSSSSSS----S- CS
  Myb_DNA-bind_4   3 kWteeetklLieawge.rilelrfqergkkrnkklWeevaeamaer.gykrspeqCkeKienLkkrYkkekerekgsgssw 81 
                     +W+e+ + +L +   e +    + ++++  +++ + ++v++ ++e+ g +  ++q+++K++++k + k+  ++  g+ s w
      CCE29668.1  58 RWNEATMACLCSCLIElA-NAGKQTDNQGFKAA-DLKDVSRTLQEQcGADFDAKQIRSKWDDMKAKWKEWCRH-LGRVSGW 135
                     688888888888887722.22222235677777.*********9655*********************98887.4766666 PP

>> DUF3246  Protein of unknown function (DUF3246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.4       0.1   6.1e+02      48      69 ..     186     207 ..     172     217 .. 0.66
   2 ?   11.5   1.8   2.5e-05      0.15      53     119 ..     233     305 ..     212     322 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.1
     DUF3246  48 ssitvvgtsstgsddddDddde 69 
                 +  t +  +  g++ +dDddde
  CCE29668.1 186 QHATSLDQTLMGGEGGDDDDDE 207
                 4455555666677777776666 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 2.5e-05
     DUF3246  53 vgtsstgsddddDdddetDceteietvP.....tgtttidptss.gtitsiptasddddetdcetetitveps 119
                 +++   g+ d+dD  d+  ++t iet+       +++ +  ts+ g +t ip    ++d +    e +  +++
  CCE29668.1 233 AAAGGEGGGDGDDGLDDAGSDTSIETIGdndtpSNPAHRGNTSArGNATNIPRSHRKEDAAASSFERTMNRST 305
                 455556677777767778888888887522222566665555547*******999888877766665444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2977.28
//
Query:       CCE29669.1  [L=732]
Description: related to ceramidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-219  730.2   0.0   1.4e-219  730.0   0.0    1.0  1  Ceramidase_alk   Neutral/alkaline non-lysosomal ceramidase, N
    1.8e-55  187.4   0.1    2.9e-55  186.7   0.1    1.4  1  Ceramidse_alk_C  Neutral/alkaline non-lysosomal ceramidase, C


Domain annotation for each model (and alignments):
>> Ceramidase_alk  Neutral/alkaline non-lysosomal ceramidase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  730.0   0.0  1.5e-223  1.4e-219       1     507 []      46     566 ..      46     566 .. 0.97

  Alignments for each domain:
  == domain 1  score: 730.0 bits;  conditional E-value: 1.5e-223
                     EEEEEEEEE----SEEEEEESS--SS-EEEEESS--EEEEEEEEESS.S--EEEEEEESSS---HHHHHHHHHHHHHH...STTT-SGGGEEEEE CS
  Ceramidase_alk   1 YlvGvgkaDiTGpvaevnlmGYakleqkasGlhqRlysraFivadae.kkkrvvfvsldaamvsqavrlevlkkLkak...ygdlYteenvalsg 91 
                     Yl+GvgkaDiTGpv+e++++GYa+l+qk++Gl+qRlysraFivad++ +k+r v+++lda+++++avr++vl+ Lka+   y ++Y  +n+al+g
      CCE29669.1  46 YLIGVGKADITGPVVEIGFAGYANLDQKGTGLRQRLYSRAFIVADKNnPKDRWVYLVLDAQSGDTAVRYGVLDGLKALgdeY-KVYGPRNLALTG 139
                     9********************************************998999************************9987756.9*********** PP

                     --BSBEE----SSHHHHGGGTB--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE--SSEEETTHHHHTT-T..T-TT-TTS---EEEEEEEE CS
  Ceramidase_alk  92 tHtHsgpggylqyllyqitslGfvkqsfdaivdgivksikrAheslkpgklsvgkgelldaninRSpsaYlanPeeerakYksnvdkemtlLkle 186
                     tH+H+gpg++++yll+qit+lGf+kqs++a+vdg+v sikrAhe+l++g+l++g+++++da inRS +aYlanPe+er++Y++++d++mtlL+++
      CCE29669.1 140 THSHAGPGAWFNYLLPQITTLGFDKQSYQALVDGAVLSIKRAHENLQEGYLDTGSTRVKDAAINRSLYAYLANPEAERRQYEDETDTTMTLLRFK 234
                     *********************************************************************************************** PP

                     E...T-EEEEEEE----B-SS-TT--SBB-HHHHHHHHHHHHTT--S.....TT-EEEEE-SS-TTEES-SS....................... CS
  Ceramidase_alk 187 dasdkkeiGvlnwfavHgtslnntntlisgDNkGvAayllekevekkeksgkekfvaafaqsnvGDvspnvlGalCed.sgeeCdlekstCeg.k 279
                     +a+d+k+iGvl+wf+vHgtsl  +nt+ ++DNkGvAa+lle+++++++ +++e+fva+f+q++vGD++pnvlGa+C+d sg++C+le+stC++ k
      CCE29669.1 235 RAKDGKDIGVLTWFPVHGTSLLGNNTHAAADNKGVAAWLLEEAMRENT-NAAEGFVAGFSQASVGDTTPNVLGAYCDDgSGQQCSLENSTCADgK 328
                     *********************************************996.89****************************************977* PP

                     SSS..TSSSTS...-.HHHHHHHHHHHHHHHHHHHH...HHT-EEE-S-.EEEEEEEEE-TT-EE-GGTSS-EE-----EE----SS-SSSS-SS CS
  Ceramidase_alk 280 sekcagrgpgk...d.efestkiigerqfekakell...ksakeevsgk.vksrhqyvdmskvevklkngtevktckaalGysfaagttdgpgaf 366
                     s+kc+grgp +   d +++s+++ig+rqf  a++++    ++ +++ g+ vk++h ++dm+ ++++l+ng++++tc+aalGysfaagt+d pg f
      CCE29669.1 329 SQKCHGRGPEFaalDlGVKSCHEIGRRQFVGAQNVYtalGTSGTAIVGStVKAFHFFHDMRFWNFTLPNGQQAQTCPAALGYSFAAGTSDWPGLF 423
                     ***********99*99********************87756667788877********************************************* PP

                     ---S...SS...-HHHHHHT-SS-S---HHHHHHTTT--EEE--T..T-SS-SS-SEEEEEEEEETTEEEEE-SSEE-HHHHHHHHHHHHHHHGG CS
  Ceramidase_alk 367 dftq...geteknplwklvrklllakpskeqkecqapkpilldtgelkkpyawapeivdvqilriGqlvivavpgEvttmaGrRlreavkealks 458
                     dftq   g+ ++np+wklv+ ll++ p+k+q +cq  kpilld+ge+++py+wap+ivd+q+lr+Gq+vi+++p+E+ttm+GrR++ av++++++
      CCE29669.1 424 DFTQgdsGNPDANPIWKLVSGLLRS-PTKAQAACQGSKPILLDVGEINEPYPWAPNIVDIQMLRVGQFVIIVSPSEATTMSGRRWKAAVAKEAAT 517
                     ****65555889*********6666.********************************************************************* PP

                     GT..--EEEEE-SBSS---EE--HHHHHH--HHHHT-TT-TTHHHHHHH CS
  Ceramidase_alk 459 egkkeeevvlaglaNtYshYvtTeeEYqvQrYEgastlyGphtlsayiq 507
                       ++++ vvl+g+aN+Y+hY++T+eEY+vQrYEgastl+Gph+l+ayi+
      CCE29669.1 518 FLTEKPIVVLGGPANSYAHYCATPEEYEVQRYEGASTLFGPHELNAYIN 566
                     ***********************************************96 PP

>> Ceramidse_alk_C  Neutral/alkaline non-lysosomal ceramidase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.7   0.1   3.2e-59   2.9e-55       3     168 .]     570     731 ..     568     731 .. 0.94

  Alignments for each domain:
  == domain 1  score: 186.7 bits;  conditional E-value: 3.2e-59
                      HHHHHHHHT..-----------.-GG--B-S--------STT--TT-EEE---.SEETT-EEEEEEEE--GGG---TTS-SEEEEEE...S-S- CS
  Ceramidse_alk_C   3 klaralaagepeelkkgptPpdlsskqlslitgvvvDtaplgksFGdvltdveksyragdtvsvtFvganPrnnlrlegtFlaVerleeeegkk 96 
                      + +++l+ + +++ ++g  +pd++ + ls+ +gv+vD+aplg+sFG+vl+++++sy++g+ v+vtF+ganPrnnlrlegtF+++e+++  +g++
       CCE29669.1 570 SNMHYLRPDATSTPEQGAPAPDNRGSVLSFTPGVIVDNAPLGRSFGQVLRQPDPSYKVGSIVQVTFQGANPRNNLRLEGTFASIEQKK--TGGD 661
                      668899999777778899999*9***************************************************************84..5789 PP

                      -EEEEETTSTTEEEEEEEET..TTEEEEEEEEE-..-T--SEEEEEEEEEEEE-TTT--EEEEEEE---EEE CS
  Ceramidse_alk_C  97 WetvrtDadwetrfeWkrtssllgtsevtieWeipeedakaGtYRiryfGdaksslggkitpfeGtSseFtv 168
                      W++v++D+dw ++++W+rt+s lg+sev+++We+   +a +GtYR++y+Gdak+ l gki +feGtS+ Ft+
       CCE29669.1 662 WAQVKNDGDWFLVYSWRRTNSFLGYSEVDVSWETYG-NAVPGTYRVKYYGDAKH-LFGKIDAFEGTSNPFTL 731
                      **********************************55.79**************8.7799***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 5068.93
//
Query:       CCE29670.1  [L=103]
Description: uncharacterized protein CPUR_03517 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0097   16.1   0.0      0.059   13.6   0.0    2.0  1  DND1_DSRM  double strand RNA binding domain from DEAD END PRO


Domain annotation for each model (and alignments):
>> DND1_DSRM  double strand RNA binding domain from DEAD END PROTEIN 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.3e-06     0.059       6      30 ..      22      47 ..      17      88 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-06
   DND1_DSRM  6 lLeelCeknkwgsPvYelhs.eagpd 30
                 Lee+C+  ++ +Pv+++ s  +g  
  CCE29670.1 22 RLEEICRGAQLMPPVFQIVSdRRGGR 47
                69****************99777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 780.70
//
Query:       CCE29671.1  [L=381]
Description: uncharacterized protein CPUR_03518 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-25   89.0   0.0      4e-25   88.2   0.0    1.3  1  Ribosomal_S7  Ribosomal protein S7p/S5e


Domain annotation for each model (and alignments):
>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0   2.2e-29     4e-25      20     149 .]     211     368 ..     197     368 .. 0.87

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 2.2e-29
                   SBHHHHHHHHHSBTTBHHHHHHHHHHHHHHHHHH....................HSS-HHHHHHHHHHHCS-SEEEEEEB...SSSSBEEEEEEE-H CS
  Ribosomal_S7  20 selveklinklmkdGkkslAekivygaldiieek....................tkkdplevleeAlenvkPrvevksrr...vGGatyqvpvevrp 93 
                    + +e++++ lm dGk s+A++ v  +++ +++                        +p+ +++ A+++v+P + ++++     GG + + p +++ 
    CCE29671.1 211 HPAMEQFTRLLMVDGKLSVAQSNVAMVMNFLRTApapiyspkypllpgsppashLPLNPILYITLAIDSVAPLLSIRNIAgagGGGRALELPSPLNV 307
                   4589*****************************9999999999888877765433449********************9987789************ PP

                   HHHHHHHHHHHHHHHSTSSSS.....-HHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTG CS
  Ribosomal_S7  94 kRrqalAlrwiieaarkrkek.....smaekLaeElidAaegegaavkkreethrmAeanr 149
                   ++r++lA++wi++ + k+ +k     ++ +++a+E+i+++eg++++++kr ++h++A+a+r
    CCE29671.1 308 RQRRRLAIQWILDVVDKKPSKgsgrkQFPHRIADEIIAVVEGRSTVWEKRRQVHKVATAAR 368
                   ***************5555442222277*******************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3154.09
//
Query:       CCE29672.1  [L=728]
Description: uncharacterized protein CPUR_03519 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-25   89.7   0.6    1.3e-15   58.2   0.1    2.8  2  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   7.4e-11   1.3e-06       3      70 ..     490     557 ..     488     578 .. 0.85
   2 !   58.2   0.1   7.1e-20   1.3e-15      45     141 .]     598     694 ..     588     694 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 7.4e-11
                 SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH CS
         Usp   3 krIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada 70 
                 ++ lVa+D s+es++AlewA+    ++g++li+++++d+++   ++d+     e  ++ e+a++ ++ 
  CCE29672.1 490 RKYLVATDLSDESTHALEWAIGTVLRDGDTLIAIYCVDEETGIVTGDGSLIPDEPKAMREQAAAINTV 557
                 678************************************99888888888888888888877776554 PP

  == domain 2  score: 58.2 bits;  conditional E-value: 7.1e-20
                 CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp  45 gavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 + ++d  +++ e + + +e + + + + ++++ ++ + + v++ ++p++ i+ev + +++ l+V+Gsrgrs+l++++lGS+s+y++ ++++pV+v r
  CCE29672.1 598 SNRGDTQRAVDERSRAVQEITDKVLRLLRKTRLQVRVIVEVLHCKNPRHLITEVIDLINPTLVVIGSRGRSALKGVILGSFSNYLVTKSSVPVMVAR 694
                 4455555566666666666666666699******************************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5491.13
//
Query:       CCE29673.1  [L=750]
Description: uncharacterized protein CPUR_03520 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 5936.81
//
Query:       CCE29674.1  [L=763]
Description: probable beta-glucosidase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-41  142.4   0.0    1.2e-40  139.7   0.0    2.3  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    4.3e-32  111.8   0.2    9.9e-32  110.6   0.2    1.5  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    1.8e-20   72.8   0.3    5.9e-20   71.2   0.2    2.0  2  Fn3-like         Fibronectin type III-like domain
  ------ inclusion threshold ------
       0.15   11.5   0.0        0.3   10.6   0.0    1.4  1  CBP_BcsR         Cellulose biosynthesis protein BcsR


Domain annotation for each model (and alignments):
>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   0.0   2.7e-44   1.2e-40       2     204 .]     370     631 ..     369     631 .. 0.89

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 2.7e-44
                      EEEEEGSS--S-S-STEEEEEESGGGS.....................................SS-SS-BSSS----S---HHHHHHHHHHH. CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxx.....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C   2 VLLkNennlLPLkkklkkiaviGpnad.....................................etlklGggsgtvtvsylvsplegirerles 58 
                      VL+kNe+n+LPL ++ k++ ++G +a+                                     +tl++Gggsg+vt+ ++ sp +++ ++++ 
       CCE29674.1 370 VLVKNERNTLPL-RNPKTVSIFGYSANtapkwsaaedtppgswsmglapvlgvdiskttvigpnGTLYSGGGSGAVTPATFSSPQDALVAKAAR 462
                      9***********.55579************************************************************************9977 PP

                      .......-HHHHHHHHHHHTSEEEEEEEES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTT.GTTTEEEEEE-S--G CS
                      ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  59 ......eegideaveaakeaDvavvvvgedpeiegEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpvavepw.keenvkAilaawlpG 145
                            ++  +    +  ++++++v+ +++   ++E  Dr+dl+ +   d+lik++a+++ n++vvl+++g  +v+ + +++nv+A+l a+lpG
       CCE29674.1 463 dgftlhQDLGSSEPVVKPSSEACIVFGNAW---SAEITDRPDLQDD-YTDTLIKRIADQCANTIVVLHNAGIRTVDGFvDHPNVTALLFAHLPG 552
                      9****966666666689999**********...*********9999.********************************999************ PP

                      CCHHHHHHHHHTTSS---B--SS-EESSSGGG...........................S.-----S...ETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx..xx............xx.xxxxxx...xxxxxxxxx RF
  Glyco_hydro_3_C 146 qegGtaiadvLfGdvnPsGkLpvtfpksledlpd..dyyeek..dt............yk.fegtpl...YpeGlglsY 204
                      +++G+a++ +L G+ nPsGkLp+t+++s +d+    + +++   ++            yk fe +++   Y++G+glsY
       CCE29674.1 553 EDSGEALVSLLWGHSNPSGKLPYTVAHSPADYGAllNPHTQGgsKNpqadytagiymdYKyFEANNIqprYEFGFGLSY 631
                      ******************************9944343333333311455666788888666666666777999999999 PP

>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.2   2.2e-35   9.9e-32      65     317 ..      79     319 ..      74     321 .. 0.90

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 2.2e-35
                    .S--EEEE---BTTB---SSS.---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B-----STTSS.SGGGSS-SSHHHHHHHHHHHHH CS
  Glyco_hydro_3  65 giPlllavDqegGlvqrlgeg.tlfPsalalaatssldlikelgriiakelralgididfaPvvdvnrdprng.igvrsFsedpelvaalaaamvk 158
                      P l+ +D+ +Gl+    ++   f s +  +a+++++l+ + g +++ e    g+++ ++Pv   +    +g ++ ++ s+d +l + +aa++v 
     CCE29674.1  79 NFPGLCLSDAGQGLR--ATDKvSGFASGIHVGASWNKNLALDRGAAMGGEFKRKGVNVLLGPVTGPAWSVVKGgRNWEGASADAYLSGVMAAQTVL 172
                    567777788877777..4555599*****************************************999999999********************** PP

                    HHHHTT-EEEEEEETTGTT-SSET...TTSEEB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEE CS
  Glyco_hydro_3 159 GlqgagvaatvKHFpghGdgavds...hkelptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvv 251
                    G+q+ +v+++ KH++g  + ++ s   ++  + ++++ ++l+ev l pfq a++ag  sVM +   ++ ++ t + +s k+  + L+ elGF G+v
     CCE29674.1 173 GVQSSNVMTSTKHYIGNEQESQRSpsgDTASISTNIDDKALHEVFLWPFQDAVRAGSVSVMCS---YQRVNQTYTCASDKAQNGALKGELGFRGFV 265
                    ****************97666655222455778999***************************...********999******************* PP

                    EES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHHHH CS
  Glyco_hydro_3 252 vsDalamkeiadrggkeeavvlaLkAGvDilLvpeertseikalkkavkeGeltearidesvrrvl 317
                    vsD+      a +gg e a       G+D+ +  ++ +   k+l++av++G+ +e+r+ + ++r++
     CCE29674.1 266 VSDWG-----ALYGGLEYA-----TGGLDMGMPNAATW--DKNLVQAVQNGSFAESRVTDMATRII 319
                    *****.....445555544.....57*********999..89**********************98 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         1   4.5e+03      50      67 ..      30      47 ..      25      49 .. 0.86
   2 !   71.2   0.2   1.3e-23   5.9e-20       1      71 []     686     752 ..     686     752 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1
                ETTTTEEE--SCEEEEEE CS
    Fn3-like 50 deekqkwvvepGeytvlv 67
                d ++++w v  G+ + +v
  CCE29674.1 30 DATANDWAVSHGKAQAMV 47
                778899******999888 PP

  == domain 2  score: 71.2 bits;  conditional E-value: 1.3e-23
                 EEEEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESSS CS
    Fn3-like   1 evvqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgtss 71 
                 e +qlYv+ p +     +k+L+gF+k +L+ Ge+++v+f+l+r+dlsvwd+ +qkw +++G+y+v+vg ss
  CCE29674.1 686 EAAQLYVRIPGT----KAKQLRGFTKQFLKVGEKARVSFSLTRRDLSVWDTGAQKWLLQKGRYEVFVGMSS 752
                 789*******98....79**************************************************997 PP

>> CBP_BcsR  Cellulose biosynthesis protein BcsR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.7e-05       0.3      13      36 ..     630     653 ..     628     653 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.7e-05
    CBP_BcsR  13 slpelrYiDIareerlasalaRWP 36 
                 s   ++Y+DI+++  l s  +RWP
  CCE29674.1 630 SYTRFDYSDINMQGPLGSFRNRWP 653
                 66789******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5432.36
//
Query:       CCE29675.1  [L=770]
Description: uncharacterized protein CPUR_03522 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-85  281.5   3.0    1.9e-22   78.8   0.1    5.4  5  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    2.6e-28   98.0   2.3    1.8e-27   95.3   2.6    2.3  2  PABP          Poly-adenylate binding protein, unique domain
    2.7e-11   43.2   0.0       0.01   15.4   0.0    5.1  5  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    6.6e-07   29.4   0.1       0.35   11.0   0.0    5.3  5  RRM_7         RNA recognition motif
    1.6e-06   27.8   0.0     0.0029   17.5   0.0    3.7  3  RRM_occluded  Occluded RNA-recognition motif
      1e-05   25.4   0.1        8.8    6.4   0.0    4.8  5  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
     0.0054   16.8   0.0         16    5.7   0.0    3.6  3  CbiG_mid      Cobalamin biosynthesis central region
  ------ inclusion threshold ------
      0.071   12.8   1.3         15    5.4   0.0    3.5  3  OB_RNB        Ribonuclease B OB domain
       0.14   10.4  13.7       0.22    9.8  13.7    1.3  1  CDC45         CDC45-like protein
       0.27   10.0   8.8       0.43    9.3   8.8    1.2  1  NPR3          Nitrogen Permease regulator of amino acid trans
        1.9    8.9   8.3        2.8    8.4   0.1    3.7  3  DHHA1         DHHA1 domain
        2.1    8.6  17.6       0.27   11.6  12.3    2.1  2  Vfa1          AAA-ATPase Vps4-associated protein 1
        2.2    6.7  11.4        3.5    6.1  11.4    1.4  1  Macoilin      Macoilin family
        3.9    6.8  10.4          8    5.7  10.4    1.6  1  DUF4820       Domain of unknown function (DUF4820)
          4    6.1   9.8        6.2    5.5   9.8    1.3  1  Presenilin    Presenilin
        4.3    7.1  17.4          3    7.6  15.1    2.0  2  RR_TM4-6      Ryanodine Receptor TM 4-6
        6.5    5.9   5.0         11    5.2   5.0    1.3  1  Zip           ZIP Zinc transporter
        7.9    5.9   9.3         19    4.7   9.3    1.6  1  Sec62         Translocation protein Sec62


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   3.9e-21   3.9e-18       1      69 [.      59     128 ..      59     129 .. 0.98
   2 !   65.1   0.1   3.6e-21   3.6e-18       1      69 [.     147     215 ..     147     216 .. 0.98
   3 !   78.8   0.1   1.9e-25   1.9e-22       1      69 [.     240     308 ..     240     309 .. 0.98
   4 !   35.2   0.0     8e-12     8e-09       1      34 [.     343     378 ..     343     383 .. 0.90
   5 !   33.4   0.1     3e-11     3e-08      34      69 ..     446     481 ..     441     482 .. 0.93

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 3.9e-21
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+Vg L p+vte +L elFs++G + si+++rd  t++s g+a+V+++s  d ekAle+ln + ++gr++
  CCE29675.1  59 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDaVTRRSLGYAYVNYNSTADGEKALEELNYTLIKGRPC 128
                 8******************************************************************987 PP

  == domain 2  score: 65.1 bits;  conditional E-value: 3.6e-21
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +f++nL   ++++ L++ F  fG i s+k+  de+g+skg++fV +e+ e+A++A++++ng+ l+ +++
  CCE29675.1 147 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKV 215
                 8***************************************************************99986 PP

  == domain 3  score: 78.8 bits;  conditional E-value: 1.9e-25
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++V+n++pd+t++e +elF+ +G+i+s +l rd+ gks+gf+fV+++++e+A+kA+++lng+ ++g+ l
  CCE29675.1 240 IYVKNVNPDATDDEFRELFERYGDITSSSLARDQEGKSRGFGFVNYTTHESAAKAVDELNGRDFHGQDL 308
                 8***************************************************************99876 PP

  == domain 4  score: 35.2 bits;  conditional E-value: 8e-12
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE..T CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd..e 34 
                 l+++nL  dv++e+L+++Fs+fGpi+s+k++rd  +
  CCE29675.1 343 LYIKNLDDDVDDEKLRQMFSEFGPITSAKVMRDapS 378
                 8*******************************9432 PP

  == domain 5  score: 33.4 bits;  conditional E-value: 3e-11
                 TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  34 etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 + gkskgf+fV F +++dA+kA++++n ++++g++l
  CCE29675.1 446 KFGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPL 481
                 679******************************987 PP

>> PABP  Poly-adenylate binding protein, unique domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.9   3.9e+03      29      41 ..     199     211 ..     168     217 .. 0.75
   2 !   95.3   2.6   1.8e-30   1.8e-27       3      68 .]     681     746 ..     679     746 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.9
        PABP  29 pelAgKITGMLLe 41 
                 ++   ++ GMLL 
  CCE29675.1 199 QQAIKHVNGMLLN 211
                 4455589999996 PP

  == domain 2  score: 95.3 bits;  conditional E-value: 1.8e-30
        PABP   3 elakaspeqqkqiLGerLypkiqklnpelAgKITGMLLemdnsellellesdeeLrekveeAievl 68 
                 +l +a+p qqkq+LGe ++pkiq++n elAgKITGMLLemdn+el++l+e+d +L++kv+eA++v+
  CCE29675.1 681 QLGAAAPAQQKQMLGEMIFPKIQAINAELAGKITGMLLEMDNAELINLIEDDAALKAKVDEALAVY 746
                 6778999********************************************************996 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     1e-05      0.01      14     101 ..      43     135 ..      29     146 .. 0.78
   2 !    9.0   0.2     0.001         1      29      96 ..     147     217 ..     137     235 .. 0.81
   3 !    7.6   0.0    0.0027       2.7      30     101 ..     241     315 ..     222     329 .. 0.81
   4 ?    1.2   0.0      0.26   2.6e+02      25      64 ..     339     377 ..     316     380 .. 0.78
   5 ?    2.6   0.0     0.095        94      65     108 ..     452     495 ..     446     504 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1e-05
       RRM_5  14 atgspgaagvaegsV.llVyglepdkvnldklFnlfclYgnvervkflk.....tkketalvqmgdasaveravqHLnnaklfgkrlevalSKq 101
                   + + aa+++++s  l V  l+p+ v+  +lF lf++ g v+ +++ +        ++a v+  ++ + e+a++ Ln + + g++ +++ S +
  CCE29675.1  43 SATPSSAAPHPQNSAsLYVGELDPS-VTEAMLFELFSQIGAVASIRVCRdavtrRSLGYAYVNYNSTADGEKALEELNYTLIKGRPCRIMWSQR 135
                 3333578888888762667778875.8899***************98762221145699**************************999999976 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.001
       RRM_5  29 llVyglepdkvnldklFnlfclYgnvervkflk....tkketalvqmgdasaveravqHLnnaklfgkrlev 96 
                 +++ +l+   +  + l   f+ +gn+   k+ +    + k++ +v      a+++a++H+n+  l +k++ v
  CCE29675.1 147 VFIKNLDVA-IDNKALHDTFAAFGNILSCKVAQdehgSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYV 217
                 556777754.66678999999******9999983333568899*********************99998766 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0027
       RRM_5  30 lVyglepdkvnldklFnlfclYgnvervkflktkketa....lvqmgdasaveravqHLnnaklfgkrlevalSKq 101
                  V +++pd  + d+   lf  Yg++    + + +++++    +v+     ++ +av+ Ln+   +g+ l v    +
  CCE29675.1 241 YVKNVNPDA-TDDEFRELFERYGDITSSSLARDQEGKSrgfgFVNYTTHESAAKAVDELNGRDFHGQDLYVGRAQK 315
                 567777764.5577889999*******9999999876433339************************999876543 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.26
       RRM_5  25 egsVllVyglepdkvnldklFnlfclYgnvervkflktkk 64 
                 +g  l + +l+   v  +kl  +f+ +g +   k+++  +
  CCE29675.1 339 QGVNLYIKNLDD-DVDDEKLRQMFSEFGPITSAKVMRDAP 377
                 444566788875.58999******************9765 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.095
       RRM_5  65 etalvqmgdasaveravqHLnnaklfgkrlevalSKqqavseke 108
                 +  +v  ++  ++ +av  +n   + gk+l val  ++ v +++
  CCE29675.1 452 GFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQ 495
                 566677788889999********************999987654 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.23   2.3e+02       2      29 ..      57      84 ..      56     118 .. 0.75
   2 !   11.0   0.0   0.00035      0.35       3      70 ..     146     205 ..     144     227 .. 0.78
   3 ?    3.4   0.0     0.081        81       4      68 ..     240     296 ..     238     320 .. 0.70
   4 ?    4.9   0.0     0.027        27       6      29 ..     345     368 ..     341     398 .. 0.78
   5 ?   -0.7   0.0       1.5   1.5e+03      43      81 ..     444     485 ..     425     498 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.23
       RRM_7  2 rkvFvGGlPiDiteeelkatfkefgkvl 29
                  ++vG l + +te+ l + f++ g+v+
  CCE29675.1 57 ASLYVGELDPSVTEAMLFELFSQIGAVA 84
                56899*****************999875 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00035
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLleac 70 
                  vF+  l + i++++l++tf +fg++l     +         ++ + kgy f+ +e++++ ++ +++ 
  CCE29675.1 146 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD--------EHGSSKGYGFVHYETDEAAQQAIKHV 205
                 599999******************9974222222........234568**********9999888765 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.081
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLle 68 
                 ++v  + +D t++e  + f+++g+++     + ++           +g+ f+ +++++s ++ ++
  CCE29675.1 240 IYVKNVNPDATDDEFRELFERYGDITSSSLARDQE--------GKSRGFGFVNYTTHESAAKAVD 296
                 78888999***************987543222222........1234666666666666665555 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.027
       RRM_7   6 vGGlPiDiteeelkatfkefgkvl 29 
                 +  l  D+++e+l + f+efg+++
  CCE29675.1 345 IKNLDDDVDDEKLRQMFSEFGPIT 368
                 556778***************975 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.5
       RRM_7  43 aenskaakgyvflvfedeksvkaLleacteee...eelylkl 81 
                  ++    kg+ f+ f++ +  ++ + + ++     + ly+ l
  CCE29675.1 444 DKKFGKSKGFGFVCFSNPDDATKAVAEMNQRMingKPLYVAL 485
                 335566789****99987776666666666554534444444 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.9e-06    0.0029       8      74 ..     244     314 ..     238     316 .. 0.88
   2 ?    4.1   0.0     0.041        41       5      32 ..     344     370 ..     342     377 .. 0.85
   3 ?    1.0   0.0      0.38   3.7e+02      42      70 ..     455     483 ..     451     493 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.9e-06
  RRM_occluded   8 plsDtvnkariralveekegeikkivLvpdheG.....AivefkdekiagkasLaLdgsefegkklrcGtvk 74 
                   +++   ++++ r+l+e + g+i+   L  d+eG      +v ++ +++a+ka+ +L+g +f+g+ l +G  +
    CCE29675.1 244 NVNPDATDDEFRELFERY-GDITSSSLARDQEGksrgfGFVNYTTHESAAKAVDELNGRDFHGQDLYVGRAQ 314
                   6666678999********.**************6666669****************************9875 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.041
  RRM_occluded   5 sllplsDtvnkariralveekegeikki 32 
                    + +l D v ++++r++++e  g+i+  
    CCE29675.1 344 YIKNLDDDVDDEKLRQMFSEF-GPITSA 370
                   5779*****************.999865 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.38
  RRM_occluded  42 ivefkdekiagkasLaLdgsefegkklrc 70 
                   +v f++  +a ka+ +++   ++gk l +
    CCE29675.1 455 FVCFSNPDDATKAVAEMNQRMINGKPLYV 483
                   58899*******************98865 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.3     3e+02      35      53 .]      97     115 ..      72     115 .. 0.71
   2 ?    4.7   0.1      0.03        30      21      52 ..     165     201 ..     162     202 .. 0.93
   3 !    6.4   0.0    0.0089       8.8      17      53 .]     254     295 ..     245     295 .. 0.91
   4 ?   -1.9   0.0       3.5   3.5e+03      20      31 ..     360     371 ..     355     380 .. 0.79
   5 ?    5.8   0.0     0.013        13      30      53 .]     445     468 ..     442     468 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.3
  Nup35_RRM_2  35 evsvmyvkfesekdaekAL 53 
                  +  ++yv + s  d ekAL
   CCE29675.1  97 SLGYAYVNYNSTADGEKAL 115
                  45589*************8 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.03
  Nup35_RRM_2  21 FasfGeIvkhyvp.....kevsvmyvkfesekdaekA 52 
                  Fa fG+I    v      +++ + +v +e+  +a++A
   CCE29675.1 165 FAAFGNILSCKVAqdehgSSKGYGFVHYETDEAAQQA 201
                  899******9999999999999**************9 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0089
  Nup35_RRM_2  17 VlehFasfGeIvkhyvp.....kevsvmyvkfesekdaekAL 53 
                   +e F+ +G I+  +       k++ + +v + +  +a+kA+
   CCE29675.1 254 FRELFERYGDITSSSLArdqegKSRGFGFVNYTTHESAAKAV 295
                  57789********99999999999*****************8 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 3.5
  Nup35_RRM_2  20 hFasfGeIvkhy 31 
                   F +fG+I+   
   CCE29675.1 360 MFSEFGPITSAK 371
                  5999****9755 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.013
  Nup35_RRM_2  30 hyvpkevsvmyvkfesekdaekAL 53 
                  + ++k++ + +v+f +++da kA+
   CCE29675.1 445 KKFGKSKGFGFVCFSNPDDATKAV 468
                  5677889999*************8 PP

>> CbiG_mid  Cobalamin biosynthesis central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.016        16      10      52 ..     105     147 ..      98     166 .. 0.83
   2 ?    4.4   0.0     0.041        40      17      42 ..     199     224 ..     177     242 .. 0.82
   3 ?    1.8   0.0      0.25   2.5e+02      17      42 ..     465     490 ..     446     515 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.016
    CbiG_mid  10 fGwriegegaltevsaalvngepvavlqdvrlegterlertlp 52 
                 ++ + +ge+al e++ +l++g+p  +++ +r++  ++  + + 
  CCE29675.1 105 YNSTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNV 147
                 5666799*********************999888877766555 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.041
    CbiG_mid  17 egaltevsaalvngepvavlqdvrle 42 
                 ++a+++v+++l+n+++v v  +++ +
  CCE29675.1 199 QQAIKHVNGMLLNEKKVYVGHHIPKK 224
                 6899*************987755554 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.25
    CbiG_mid  17 egaltevsaalvngepvavlqdvrle 42 
                  +a+ e++++++ng+p  v + +r  
  CCE29675.1 465 TKAVAEMNQRMINGKPLYVALAQRKD 490
                 5789999*********8888844333 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.015        15       5      18 ..     182     195 ..     181     204 .. 0.83
   2 ?    1.9   0.1      0.18   1.8e+02       5      14 ..     275     284 ..     274     291 .. 0.83
   3 ?    1.8   0.0       0.2     2e+02       6      13 ..     449     456 ..     448     475 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.015
                 E-SSS-EEEEECT. CS
      OB_RNB   5 ahkkGFGFlipdeg 18 
                 +++kG+GF+  +++
  CCE29675.1 182 GSSKGYGFVHYETD 195
                 789******99973 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.18
                 E-SSS-EEEE CS
      OB_RNB   5 ahkkGFGFli 14 
                 + ++GFGF+ 
  CCE29675.1 275 GKSRGFGFVN 284
                 6789****96 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.2
                 -SSS-EEE CS
      OB_RNB   6 hkkGFGFl 13 
                  +kGFGF+
  CCE29675.1 449 KSKGFGFV 456
                 689****9 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  13.7   0.00022      0.22     107     196 ..     348     486 ..     297     525 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00022
       CDC45 107 fDDgdieeeleeereayealeeeeesd...eedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrk..sksdeeee..sddddersrkrrrse... 195
                 +DD   +e+l++  +++  +++ +  +   ++ +e + e++++++e+e e+++e+++e++ee +++k++  ++++++++  ++++d+ ++k+  ++   
  CCE29675.1 348 LDDDVDDEKLRQMFSEFGPITSAKVMRdapSDGSEAD-EQEEESAEKEAETKKEDTKEATEEATSEKTSekTSEKTSDKaaDKTSDKTAEKKGDKKgdk 445
                 4555447888887776666555555442223332222.2222222222222222222222222222222111122222233223333333333333455 PP

       CDC45 196 ........................................p 196
                                                         +
  CCE29675.1 446 kfgkskgfgfvcfsnpddatkavaemnqrmingkplyvalA 486
                 66666677777766666666655555555555555554442 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   8.8   0.00043      0.43      59     147 ..     382     473 ..     354     494 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00043
        NPR3  59 ssrskekkskesskksesssksesseekksskeseeseekesneeeeeeededdeesekeeeekedkkknltmFhlvfvlnPpls.....eyns 147
                 +  ++e++s e+++++++++++e++ee +s+k  ++++++e+ +++  ++++d+++++k +++ ++k  + + F +v++ nP++      e+n+
  CCE29675.1 382 EADEQEEESAEKEAETKKEDTKEATEEATSEK--TSEKTSEKTSDKAADKTSDKTAEKKGDKKGDKKFGKSKGFGFVCFSNPDDAtkavaEMNQ 473
                 23233333333333333333222222222222..222222222222333333333334456666677778888999999999876444444444 PP

>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.2   6.2e+03      43      70 ..     189     214 ..     174     217 .. 0.72
   2 ?    8.4   0.1    0.0028       2.8      18      62 ..     319     363 ..     311     368 .. 0.79
   3 ?    0.6   3.3      0.69   6.8e+02      23      82 ..     423     493 ..     383     517 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.2
                 EEEECHCCHHHHHHHHHHHHHHTHGBTT CS
       DHHA1  43 lvaevgeewdagalgiaadklksklkkp 70 
                 +v++  +e+ + a++ + ++l++  +k+
  CCE29675.1 189 FVHYETDEAAQQAIKHVNGMLLN--EKK 214
                 44555599999999999999999..665 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0028
                 HHHHHHHHHHHHHHHTCEEECTCEEEEEECHCCHHHHHHHHHHHH CS
       DHHA1  18 lkealaklkaeellekaeevkgvkvlvaevgeewdagalgiaadk 62 
                  +e+l +  +++ leka +++gv+++++++++++d   l+++ ++
  CCE29675.1 319 REEELRRSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFSE 363
                 556666666666677777778*******************99876 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.69
                 HHHHHHHHHHTCEEEC.........TCEEEEEECHCCHHHHHHHHHHHHHHTHGBT.TCEEEEEEEECT..E CS
       DHHA1  23 aklkaeellekaeevk.........gvkvlvaevgeewdagalgiaadklksklkk.pvivfvakeegd..k 82 
                 ++++a++  +k+ e k         g++  + +v    ++++   a+ ++++++ + +   +++++++d  k
  CCE29675.1 423 SDKAADKTSDKTAEKKgdkkgdkkfGKSKGFGFV-CFSNPDDATKAVAEMNQRMINgKPLYVALAQRKDvrK 493
                 2222222222222222444455557888888888.8888888888888888888666666666666665553 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2       3.3   3.2e+03      67      87 ..     315     335 ..     282     362 .. 0.57
   2 ?   11.6  12.3   0.00027      0.27      57     171 ..     384     523 ..     373     538 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.3
        Vfa1  67 eleeeiekvkkeyeekqkkkk 87 
                 +++e+ e+++++ye+ + +k+
  CCE29675.1 315 KKHEREEELRRSYEAARLEKA 335
                 222222333333333333333 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00027
        Vfa1  57 eeeeaakkkkeleeeiekvkkeyeekqkkkkekekkkkekd.kkdkdkkkekekdkkkekek...............eeekkkelkkaeeelee..... 134
                 +e+e+++++ke+e++ e++k+ +ee +++k+++++++k++d + dk+++k+ ek+ +k+ +k                ++++k+ ++ ++++ +     
  CCE29675.1 384 DEQEEESAEKEAETKKEDTKEATEEATSEKTSEKTSEKTSDkAADKTSDKTAEKKGDKKGDKkfgkskgfgfvcfsnPDDATKAVAEMNQRMINgkply 482
                 334445566666667777777777766666655555433333333333333333333333335566778889888774444444444444444456678 PP

        Vfa1 135 ...keeprvkkykLhkefyqsRlerk.rqaeaakeneerlq 171
                    ++++ v+k +L+ ++ +  + r  ++a aa   ++++q
  CCE29675.1 483 valAQRKDVRKSQLEASIQARNQLRLqQAAAAAGMPQQYMQ 523
                 88888888888888888744333333223333344455555 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  11.4    0.0035       3.5     265     425 ..     336     509 ..     194     517 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0035
    Macoilin 265 srsdskkkhehn.........esvdsklqekeymenkskskrlskse.ssgsesellveesvkskssssssssnknskkasagsagssnssskkhsess 353
                 ++++                 +  d+kl+++      ++s+++ ++  s+gse + + ees++++++++++++++ +++a++++++  +s   + ++++
  CCE29675.1 336 NKYQG------VnlyiknlddDVDDEKLRQMFSEFGPITSAKVMRDApSDGSEADEQEEESAEKEAETKKEDTKEATEEATSEKTSEKTSEKTSDKAAD 428
                 22222......1334444563334455555555556777777766541566777777777777777777777766666666665555555555555556 PP

    Macoilin 354 ksvtsssssknskkqklpaGkssa......alkdaaenslpnnql...skkdalvrLeadikkLkaeLqasrqteqelrsk 425
                 k   +++++k +kk    +Gks+       ++ d a + +++ +      k   v L +     k++L+as q  ++lr +
  CCE29675.1 429 KTSDKTAEKKGDKKGDKKFGKSKGfgfvcfSNPDDATKAVAEMNQrmiNGKPLYVALAQRKDVRKSQLEASIQARNQLRLQ 509
                 666666678888887777777765445444444555555443222233333334455555444556666666666666654 PP

>> DUF4820  Domain of unknown function (DUF4820)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  10.4    0.0081         8     165     221 ..     383     439 ..     311     448 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0081
     DUF4820 165 artlterksekesaesseskkrnkeerdaeseeessedeeeeetvkellekyanens 221
                 a   +e+++eke ++++e++k+  ee ++e+++e++++++ +++ ++  +k a++++
  CCE29675.1 383 ADEQEEESAEKEAETKKEDTKEATEEATSEKTSEKTSEKTSDKAADKTSDKTAEKKG 439
                 222233333444444444444445555555555555555555555555555555444 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   9.8    0.0063       6.2     234     290 ..     382     438 ..     313     463 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0063
  Presenilin 234 eseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeess 290
                 e++e+ee++++ke+++++++++e++ee++++++++++se++s++++ +++++++e++
  CCE29675.1 382 EADEQEEESAEKEAETKKEDTKEATEEATSEKTSEKTSEKTSDKAADKTSDKTAEKK 438
                 111111111111111111111111111111111111111111111111111111111 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.3   4.3e+03      42      86 ..      11      55 ..       3      62 .. 0.72
   2 ?    7.6  15.1     0.003         3      57     152 ..     348     441 ..     273     461 .. 0.42

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.3
                XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXX CS
    RR_TM4-6 42 dllsdvfgldlkkeggqykvvakkseagLgDlseteaeesptpel 86
                d l++ ++ ++   gg +k + + s +gL D s t+++ +p+p+ 
  CCE29675.1 11 DQLANDLNNTSLTSGGDAKPTVDTSVSGLEDASATPSSAAPHPQN 55
                444444555666677778888888889****99999998887664 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.003
                 XXXX...XXXXXXXXXXXXXXXXXXXX..XXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXX CS
    RR_TM4-6  57 gqykvvakkseagLgDlseteaeespt..pelkkkla..eeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkaksk 151
                     v  +k  + +++++  ++++ +   p+   +    eee+ae+e e+++e ++ea+e+a++e+++++++ek++++++++++       k++++k +
  CCE29675.1 348 LDDDVDDEKLRQMFSEFGPITSAKVMRdaPSDGSEADeqEEESAEKEAETKKEDTKEATEEATSEKTSEKTSEKTSDKAADKTSD------KTAEKKGD 440
                 2223333344444444444444444332211111111002222222222222222222222222222222222221111111111......11222222 PP

                 X CS
    RR_TM4-6 152 k 152
                 k
  CCE29675.1 441 K 441
                 2 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   5.0     0.011        11     109     169 ..     380     440 ..     355     505 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.011
         Zip 109 ktpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeq 169
                  ++ ++++++s+++ +++ ++d+ e +ee ++++++++t+++++ + +++ ++k+ ++k  
  CCE29675.1 380 GSEADEQEEESAEKEAETKKEDTKEATEEATSEKTSEKTSEKTSDKAADKTSDKTAEKKGD 440
                 3444444444444444444444444444443333333333333333322222222222222 PP

>> Sec62  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   9.3     0.019        19      17      70 ..     388     441 ..     369     483 .. 0.47

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.019
       Sec62  17 sekekkkskkkkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkee 70 
                 +e+ +k++++kke++ke ++++++ek+++++ +++    ++k+++k+++kk ++
  CCE29675.1 388 EESAEKEAETKKEDTKEATEEATSEKTSEKTSEKTSDKAADKTSDKTAEKKGDK 441
                 111111111111122222222222222222222222222222222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2165  (0.120754); expected 358.6 (0.02)
Passed bias filter:                      832  (0.0464053); expected 358.6 (0.02)
Passed Vit filter:                       192  (0.0107089); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.06u 0.34s 00:00:01.40 Elapsed: 00:00:00.51
# Mc/sec: 4585.58
//
Query:       CCE29676.1  [L=1146]
Description: probable HUL5-ubiquitin-protein ligase (E3) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-77  258.9   0.0    1.5e-76  257.9   0.0    1.5  1  HECT      HECT-domain (ubiquitin-transferase)
     0.0024   17.5   0.9       0.01   15.6   0.9    2.1  1  IQ        IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.9   0.0   1.7e-80   1.5e-76      10     307 .]     815    1146 .]     805    1146 .] 0.92

  Alignments for each domain:
  == domain 1  score: 257.9 bits;  conditional E-value: 1.7e-80
                  GGGSSEEESSTTSSSEEE-TTHHHHS..........................HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT.......-.---T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxx RF
        HECT   10 pklglfeeesedsgtlypkpssseee......................llklfeflGkvlGkaiyeeilldlpfsraflkfllg.......eekitl 77  
                  ++lglf+  ++++g l p+p++++                          + +eflG+++Gk++ye+il++l f+ +fl ++         ++k ++
  CCE29676.1  815 NSLGLFS--TNEQGLLFPNPTAADALrerlrrdglteddvewrgammrFIQRYEFLGRIVGKCLYEGILVNLAFAGFFLLKWPSvgtrdenTYKGSI 909 
                  4679995..89999999999875555999999***************95577******************************9999***9988999* PP

                  CHHHHH-HHHHHHHHHHH..HS-GGG...GT-BSEEEEE.TTEEE.....EEESSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   78 edleeidpelakslkellslesnteevedlaLtFtipen.agasa.....tieLipnGanipVtnenkkeYiklyvnyllkksvekqleaflkGfse 168 
                  +dl+++d++l+k l +l+s+     +v++l+ +Ft++ +  g  +     t +Lip G+++pVtn+n+ +Yi+  ++++l  +   q++afl+G+++
  CCE29676.1  910 NDLRDLDEDLYKGLLRLKSY--PG-DVSELGFDFTVTDQiSGPGQpvqtvTRKLIPHGDSVPVTNDNRLLYISYAARHRLVVQPMLQTSAFLRGLRS 1003
                  ******************66..44.4899*******99876444344777889******************************************** PP

                  TS-HHHHTTS-HHHHHHHHBCSSS.--HHHHHHTEEEETT-.....-TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-B--EEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  169 vipskalklfdaeelellisGedelidvedlrrnteykggy.....naesetiewlweilkefspeekrlfLqFvTgssrlPlgGfaelhpkftier 260 
                  +i  ++l++f+++el+ l+ G++ +id++dlrrnt y+g y     n +++ti ++w+++ +f+++++r+ L++v++++r+Pl Gf++l p+f+i+ 
  CCE29676.1 1004 IIRPSWLSMFNQSELQRLVGGDSTDIDLDDLRRNTIYSGLYvvgddNLDHPTIVLFWKVMAGFTDSQRRDVLKYVSSTPRAPLLGFSQLRPQFCIRD 1100
                  ***********************99************9998444335788*********************************************** PP

                  -S..-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHHH--XXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  261 kskedetrLPtahTCfnlLklpdYsskeilkekLltAieetegFels 307 
                   + +d++rLP+a+TC+nlLklp Y+s+++l+ekLl+Ai++++gF+ls
  CCE29676.1 1101 GG-TDQQRLPSASTCVNLLKLPIYTSEAVLREKLLYAITSGAGFDLS 1146
                  77.******************************************96 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.9   1.1e-06      0.01       3      19 ..      61      77 ..      59      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.1e-06
                HHHHHHHHHHHHHHHHH CS
          IQ  3 aaikIQaawRGylaRkr 19
                aa +IQ+awRG+++R++
  CCE29676.1 61 AAGRIQRAWRGHVTRRN 77
                5568***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 7914.93
//
Query:       CCE29677.1  [L=494]
Description: uncharacterized protein CPUR_03524 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-170  567.2   0.0   2.2e-170  567.0   0.0    1.0  1  Glyco_hydro_125  Metal-independent alpha-mannosidase (GH125)


Domain annotation for each model (and alignments):
>> Glyco_hydro_125  Metal-independent alpha-mannosidase (GH125)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  567.0   0.0  1.2e-174  2.2e-170       1     403 [.      76     494 .]      76     494 .] 0.97

  Alignments for each domain:
  == domain 1  score: 567.0 bits;  conditional E-value: 1.2e-174
                      SHHHHHHHHHHHHHHHHHTEEEETT........EEEE--BSS-SEEHHHHHHHHGGGGGGTTT......S.GGGHHHHHHHHHHHHHHHHH-TT CS
  Glyco_hydro_125   1 dpdlarlfenafpntldttvkwkeka......eltfvitGDidamWlRDsanqlasYlpllke......d.eklaslirgvinlqaryilispY 81 
                      dpdl+rlf n++pnt+dttv w+++a      el+fvitGDi+amWlRDsanql+sY+p+l++      + +++asl+rg+inlqar i+  pY
       CCE29677.1  76 DPDLYRLFVNTWPNTVDTTVLWHGRAqdnadeELAFVITGDIHAMWLRDSANQLQSYKPILNSsspentNgNSIASLFRGAINLQARSITRAPY 169
                      89***********************999**********************************9888876269********************** PP

                      -SEE-..SS...SS---SS......--BS-TT.....EEE----HHHHHHHHHHHHHHHHHH---TT--HH.HHHHHHHHHHHHHHGG...... CS
  Glyco_hydro_125  82 anaFqppeesglkkteneaa....qkdkvepeydeelvfeckyelDSlaaflqlsseyyeatgdleffeek.wvkaveaildvleeqqegtyde 170
                      +naFqpp++s+l++ +++ +    + d+v+p+yd+++v+eckyelDSlaaflqls++yy+at+d++ff++  w +av+ail+v+++++egty++
       CCE29677.1 170 CNAFQPPPDSKLPPVNHKRDlldkRGDTVQPPYDPNTVWECKYELDSLAAFLQLSWDYYDATHDAAFFGRFgWRTAVKAILKVANTMMEGTYTA 263
                      *************99998877777789*****************************************8558********************** PP

                      .GHHH.H-----B-SSSSGGGS-HHHHT-S----.SSS---SB-TTS-B-SSSEEHHHHHHHHHHHHHHHHHHHHTS--.HHHHHHHHHHHHHH CS
  Glyco_hydro_125 171 dgkkvlksaYtfqretnratetlsneglGnpvkentGlvrsaFRpSDDatifqflipaNmmlaveLeklaeileklaekelakearklakeire 264
                      dg +v+k +Y++ r++n+atet+sn+g+Gnpv  n+Glvrs+FRpSDD+ti+q+lipaNmm+a++L+++ +++e l++ e+a+e+r++ak ir+
       CCE29677.1 264 DG-HVNKLPYSWLRDANSATETVSNQGAGNPVLGNIGLVRSFFRPSDDSTIYQYLIPANMMFARYLDACVAMMEPLDA-ETATEMRNMAKGIRA 355
                      *9.888********************************************************************9986.78************* PP

                      HHHHHSEEEETTTEEEE-SEE-SSS-EE----SSSS-STTHHHHTSS-TT-HHHHHHHHHHTSTTSTTEEE-SS-EEE--TTS-TTEEEHHHHH CS
  Glyco_hydro_125 265 giekhavvehkkfgkiyAyEvDGyGsallmDDanvPsLLslpllgyvkkddevYqnTrkfvlskanpYflkGkalsgiGgphvglgkaWpmali 358
                      giek+avv+h++fg+i+AyEvDG+Gs++lmDDan+PsLLs+p+lg++ ++d++Yq+Tr++vls++npY+ +G++l+++Ggph+g+g+aWpm +i
       CCE29677.1 356 GIEKYAVVKHAEFGDIFAYEVDGFGSRNLMDDANIPSLLSIPHLGFLPSSDATYQHTRAYVLSRSNPYYGSGPVLNSTGGPHLGPGMAWPMGVI 449
                      ********************************************************************************************** PP

                      HHHHT---HHHHHHHHHHHHHTSTTSSS--SEEETTEEEEES-S- CS
  Glyco_hydro_125 359 vqaltsdddeeiaellklllkstaglglvhEsvnvdnekkftRsw 403
                      +q++tsddd+ei++ +++l+ st++lgl+hEsvn+++++k+tR+w
       CCE29677.1 450 IQIMTSDDDAEIVHGIRELMGSTSKLGLIHESVNTWDDTKWTRPW 494
                      ********************************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3517.92
//
Query:       CCE29678.1  [L=552]
Description: probable flavoprotein-ubiquinone oxidoreductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-25   88.9   0.0    3.3e-25   88.2   0.0    1.3  1  ETF_QO          Electron transfer flavoprotein-ubiquinone oxi
    3.6e-08   33.5   0.0    1.2e-07   31.8   0.0    2.0  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    6.4e-08   32.6   0.6    0.00012   21.8   0.2    2.4  2  DAO             FAD dependent oxidoreductase
    1.9e-05   24.0   1.5     0.0041   16.3   1.0    2.2  2  FAD_binding_2   FAD binding domain
    4.6e-05   22.8   0.0    0.00012   21.4   0.0    1.8  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00011   22.6   0.1       0.23   12.0   0.0    2.6  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00013   21.3   0.1      0.001   18.4   0.1    1.9  2  Thi4            Thi4 family
    0.00041   19.7   0.0     0.0006   19.2   0.0    1.3  1  FAD_binding_3   FAD binding domain
    0.00046   19.0   0.5    0.00072   18.4   0.5    1.3  1  HI0933_like     HI0933-like protein
    0.00077   19.5   0.2     0.0058   16.6   0.1    2.1  2  NAD_binding_9   FAD-NAD(P)-binding
     0.0022   16.9   0.1       0.28   10.0   0.1    2.2  2  Trp_halogenase  Tryptophan halogenase
     0.0042   16.4   0.2     0.0063   15.8   0.2    1.2  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.012   14.9   0.0      0.018   14.4   0.0    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
      0.016   14.6   0.0      0.026   13.8   0.0    1.3  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.059   12.4   0.3      0.097   11.7   0.3    1.3  1  Lycopene_cycl   Lycopene cyclase protein
       0.14   11.2   0.2       0.22   10.5   0.2    1.3  1  GIDA            Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0   2.9e-28   3.3e-25       1      73 [.     478     551 ..     478     552 .] 0.97

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 2.9e-28
                 SSSS--HHHHHHTTT-B--SSS--SEEESSTTHHHHTHHHHHS-THHHH-TTS-EEEEETT.TTSSEEEEE-CC CS
      ETF_QO   1 gkltfdklssvflsgtnheedqpvhLklkdaevavkvnlekyagpeqryCPagvyeivede.eakekklqinaq 73 
                 gk+tfd+l+sv+++gtnheedqpvhL++kd ++++++++++++g e+r+CPagvye+vede +++++++qinaq
  CCE29678.1 478 GKITFDILTSVSRTGTNHEEDQPVHLQVKDWDAHTEKTYPTFKGLENRFCPAGVYEYVEDEsKPHGVRFQINAQ 551
                 79*********************************************************997899********9 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   1.1e-10   1.2e-07       1      54 [.      42     104 ..      42     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.1e-10
                    EE--SHHHHHHHHHHHC.......CTEEEEEE-SSSSSSGGG-EECE..TTCEECTS---EEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLak.......agfdvlllekrdrlGGraasyev..pgvrvdygahifhg 54 
                    IvG+G +Gl+aA +L++       ++f+vl+lek+ + G ++ s  v  p  + ++ + ++  
     CCE29678.1  42 IVGGGPAGLSAAIRLKQlaneagnEDFRVLVLEKAGDMGAHILSGAViePSSINELIPDWLEE 104
                    9***************86655443499*****************9887655666666666655 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.2   1.1e-07   0.00012       1      46 [.      39      91 ..      39     114 .. 0.78
   2 !    8.5   0.0    0.0012       1.3     136     189 ..     139     193 ..     101     198 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.1e-07
                EEEEECTSHHHHHHHHHHHHT....T.....EEEEESSSSTTSSGGGSSEEEEES CS
         DAO  1 dvviiGGGiiGlstAyeLarr....g.....VtllekgdiagsgaSgrnsgllhs 46
                dv+i+GGG +Gls+A  L +     g     V++lek+ +   ga   +++++ +
  CCE29678.1 39 DVCIVGGGPAGLSAAIRLKQLaneaGnedfrVLVLEKAGDM--GAHILSGAVIEP 91
                9*****************44233345899********9443..677777777766 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0012
                 EETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEE.EEEETCEEEEEEECT.EE CS
         DAO 136 fypdtgqvdpakltaalaraaealGveilegtevtgl.eeedgkvwgverttp.ge 189
                 ++++  +v   +++++la++ae+ Gve++ g  + ++    dg v+gv  t++ g+
  CCE29678.1 139 HNHGNYIVSLNQFVKWLAERAEEIGVEVYPGFAAAEVlYSADGSVKGV-ATNDlGI 193
                 566667788899*******************99999633356899999.5555564 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.0   3.7e-06    0.0041       1      37 [.      39      82 ..      39      89 .. 0.72
   2 !    6.0   0.0    0.0046       5.2     135     187 ..     143     199 ..     114     231 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.7e-06
                   SEEEE--SHHHHHHHHHHHH....TTT...-EEEEESSSGGGSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaae....aGl...kvavvekeqefgga 37
                   Dv ++G+G AGL+AA+++++    aG    +v+v+ek++ +g +
     CCE29678.1 39 DVCIVGGGPAGLSAAIRLKQlaneAGNedfRVLVLEKAGDMGAH 82
                   99**************9864222233222388888888876665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0046
                    ....HHHHHHHHHHHHHHTCTEEEEESEEEEEEEEC.TTEEEEEEEEET...TTTCE CS
  FAD_binding_2 135 etlvtghallarlvesarkagvdfqerteadeLive.dgrvtGavvenp...esgre 187
                    + +v+ ++ ++ l+e+a++ gv++++  +a+e+++  dg v G+  +++   ++g+ 
     CCE29678.1 143 NYIVSLNQFVKWLAERAEEIGVEVYPGFAAAEVLYSaDGSVKGVATNDLgiaRNGKP 199
                    77899999************************9995488****98887788844443 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.1e-07   0.00012       2      31 ..      39      78 ..      38     183 .. 0.78
   2 ?   -2.3   0.0       1.9   2.1e+03     182     204 ..     528     550 ..     522     551 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.1e-07
                 SEEEE--SHHHHHHHHHHHH.......HTS-EEEEE...T CS
                 xxxxxxxxxxxxxxxxxxxx.......xxxxxxxxx...x RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq.......agakvtlve...l 31
                 dv+++GgGpAGl+aa++l+q         ++v+++e   +
   CCE29678.1 39 DVCIVGGGPAGLSAAIRLKQlaneagnEDFRVLVLEkagD 78
                 8*******************98887755888888864442 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.9
                  -HHHHHHHHHHHHHTTEEEEESC CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 182 dkelsaaleealekeGvevklgt 204
                  +  + +++e++ + +Gv+++ ++
   CCE29678.1 528 PAGVYEYVEDESKPHGVRFQINA 550
                  66778999************987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0046       5.2       2      24 ..      40      62 ..      39      84 .. 0.91
   2 !   12.0   0.0   0.00021      0.23      41      79 ..     150     189 ..     147     193 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0046
                EEEECSSHHHHHHHHHHHHTTSE CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkk 24
                v +vGgG  gl +A  l++l+++
  CCE29678.1 40 VCIVGGGPAGLSAAIRLKQLANE 62
                78****************99975 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00021
                 HHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEEEEEE CS
   Pyr_redox  41 easkilqeklekngievllntkveeiegsedg.vesvklk 79 
                 ++ k+l+e+ e+ g+ev+ +  ++e+  s+dg v++v ++
  CCE29678.1 150 QFVKWLAERAEEIGVEVYPGFAAAEVLYSADGsVKGVATN 189
                 5679*******************************99875 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1     9e-07     0.001      17      57 ..      37      83 ..      31      94 .. 0.76
   2 ?    0.2   0.0      0.32   3.6e+02      98     183 ..     150     235 ..     137     251 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9e-07
                EEEEEEE--SHHHHHHHHHH...HHC...TTS-EEEEESSSS--TTT CS
        Thi4 17 esDvvivGaGssGLtaayyl...akk...pdlkvailersvspGGGa 57
                e Dv ivG+G++GL+aa  l   a++    d++v++le+   +G  +
  CCE29678.1 37 EVDVCIVGGGPAGLSAAIRLkqlANEagnEDFRVLVLEKAGDMGAHI 83
                89***************76522254433369*******987777655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEEEHHHHTC.TTTSS.-B-EEEEEEEEEE--GSSSTTTTHHHHHHHHC CS
        Thi4  98 lftstllskvlqlanvkllnavaveDlivregegvaGvvinwtlvela.hdtqscvDPlvirakvvvdatGhdgeivavvvkkikle 183
                 +f+  l+ ++ +  +v ++ + a+ +++   + +v+Gv +n   ++++   ++s       +a+v +   G  g++ + v+ k  l 
  CCE29678.1 150 QFVKWLAERAEE-IGVEVYPGFAAAEVLYSADGSVKGVATNDLGIARNgKPKESFERGMEFHARVTMFGEGCHGSLTKQVINKFDLR 235
                 455555666655.89999999999999999999********9999998544555555566777777777777777777766666554 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.3e-07    0.0006       1      23 [.      37      59 ..      37     169 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.3e-07
                   EEEEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLsea 23
                   e+dV+IVG+GpaGl++a  L++ 
     CCE29678.1 37 EVDVCIVGGGPAGLSAAIRLKQL 59
                   68***************999865 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.5   6.5e-07   0.00072       2      40 ..      39      84 ..      38      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.5e-07
                 SEEEE--SHHHHHHHHHH.......HHTT--EEEE-SSSSS-HHHH CS
  HI0933_like  2 dviviGgGaAGlmaAisa.......akrgkrVlllekakklgrKil 40
                 dv ++GgG+AGl aAi++       ++++ rVl+leka  +g  il
   CCE29678.1 39 DVCIVGGGPAGLSAAIRLkqlaneaGNEDFRVLVLEKAGDMGAHIL 84
                 89*************9875544333567789*********999886 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   5.1e-06    0.0058       1      37 [.      41      80 ..      41      91 .. 0.85
   2 ?    0.2   0.0       0.6   6.8e+02      49      78 ..     120     160 ..     102     177 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.1e-06
  NAD_binding_9  1 aivGaGprGlavlerLlara..kkkspleitlfdpsep.g 37
                   +ivG+Gp+Gl+++ rL + a  +  +++++ + ++++  g
     CCE29678.1 41 CIVGGGPAGLSAAIRLKQLAneAGNEDFRVLVLEKAGDmG 80
                   59**************99997777799*******976525 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.6
  NAD_binding_9  49 elllNvpasemslftddp...........ptfaeWlrerga 78 
                     +++ ++++ +++++  +           ++f++Wl+er++
     CCE29678.1 120 KMRILTKTASIPVLAPPQmhnhgnyivslNQFVKWLAERAE 160
                    444445555555554444778888888889999**999985 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00025      0.28       1      33 [.      39      75 ..      39      91 .. 0.79
   2 !    4.9   0.0    0.0089        10     142     194 ..     137     190 ..      85     232 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00025
                    EEEEE--SHHHHHHHHHHHHHTTTS....SEEEEEE- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgk....levtlves 33
                    ++ ivGGG+aG  aA+ l++  ++     ++v+++e+
      CCE29678.1 39 DVCIVGGGPAGLSAAIRLKQLANEAgnedFRVLVLEK 75
                    589*************998866542222477777776 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0089
                     -B-S--EEEE-HHHHHHHHHHHHHHCT-EEEE--EEEEEE-T.TS-EEEEEETT CS
  Trp_halogenase 142 lsalsyAyhldaalyakfLrrvaearGvtrvegkvvevqlde.dgrveslrled 194
                     + + +  y +  +++ k+L + ae+ Gv++  g  +  +l   dg+v+++ ++d
      CCE29678.1 137 QMHNHGNYIVSLNQFVKWLAERAEEIGVEVYPGFAAAEVLYSaDGSVKGVATND 190
                     44445567888899*******************8776666555*******9998 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   5.6e-06    0.0063       2      30 ..      42      76 ..      41      85 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.6e-06
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagl....e..dylilEkg 30
                 I+G+GPaGl+aai lk++      e  ++l+lEk+
   CCE29678.1 42 IVGGGPAGLSAAIRLKQLANeagnEdfRVLVLEKA 76
                 9**************99765222222246777775 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.6e-05     0.018       1      35 [.      39      80 ..      39     193 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAia.......AaraGakvlLveergvlG 35
                  Dv++vGGgpaG+ AAi        A +++ +vl++e+ g +G
    CCE29678.1 39 DVCIVGGGPAGLSAAIRlkqlaneAGNEDFRVLVLEKAGDMG 80
                  9**************962222111333444666666666665 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.3e-05     0.026      29      89 ..      38      98 ..      31     137 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHH CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeav 89
                   v ++GgG aGl+A+   k+l  +    D r  +le+  ++ga++++    + ++++e +
   CCE29678.1 38 VDVCIVGGGPAGLSAAIRLKQLANEAGNEDFRVLVLEKAGDMGAHILSGAVIEPSSINELI 98
                 5799****************************************98887666666666655 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   8.6e-05     0.097       1      31 [.      39      74 ..      39      81 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.6e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarl.....teakpglkvvlie 31
                   Dv ++G+GpAgls A rl      + + + +v+++e
     CCE29678.1 39 DVCIVGGGPAGLSAAIRLkqlanEAGNEDFRVLVLE 74
                   9***************99554433344555666655 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2    0.0002      0.22       1      21 [.      39      59 ..      39      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0002
                CEEEE-SSHHHHHHHHHHHHT CS
        GIDA  1 dviViGgGhAGceAAlaaarl 21
                dv ++GgG AG+ AA+ +++l
  CCE29678.1 39 DVCIVGGGPAGLSAAIRLKQL 59
                79**************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3717.28
//
Query:       CCE29679.1  [L=253]
Description: probable transcription initiation factor TFIID [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-67  223.7   0.1      7e-33  112.4   0.0    2.1  2  TBP       Transcription factor TFIID (or TATA-binding protein
    0.00011   22.2   0.0       0.22   11.7   0.0    2.3  2  DUF3378   Domain of unknown function (DUF3378)
  ------ inclusion threshold ------
       0.12   12.2   0.1       0.67    9.8   0.0    2.1  2  DUF4295   Domain of unknown function (DUF4295)


Domain annotation for each model (and alignments):
>> TBP  Transcription factor TFIID (or TATA-binding protein, TBP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.0   1.2e-36     7e-33       2      84 ..      78     158 ..      77     159 .. 0.97
   2 !  109.5   0.0   9.8e-36   5.8e-32       1      85 []     167     250 ..     167     250 .. 0.97

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 1.2e-36
                 EEEEEEEEEEE-SSCE-HHHHHHHCCTTTEEE-TTTSSSEEEEETTTTEEEEE-TTSEEEEECESSHHHHHHHHHHHHHHHHH CS
         TBP   2 fkiqNvvasanlgleldLeklalkaekrnaeYeperfpglvyrlrepkvtaliFssGkvvitGakseeelreaakkiapilkk 84 
                 ++ qN+va++nl+++ldL+++al+a  rnaeY+p+rf ++++r+repk+taliF+sGk+v+tGakse++++ a +k+a+i++k
  CCE29679.1  78 PTLQNIVATVNLDCRLDLKTIALHA--RNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQK 158
                 578*******************998..*******************************************************9 PP

  == domain 2  score: 109.5 bits;  conditional E-value: 9.8e-36
                 EEEEEEEEEEEE-SSCE-HHHHHHHCCTTTEEE-TTTSSSEEEEETTTTEEEEE-TTSEEEEECESSHHHHHHHHHHHHHHHHHC CS
         TBP   1 dfkiqNvvasanlgleldLeklalkaekrnaeYeperfpglvyrlrepkvtaliFssGkvvitGakseeelreaakkiapilkkl 85 
                 dfkiqN+v+s++++++++Le+la++ ++++++Yepe fpgl+yr+ +pk+++liF+sGk+v+tGak +ee+++a++ i+p+l+++
  CCE29679.1 167 DFKIQNIVGSCDIKFPIRLEGLASR-HHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 250
                 69********************987.68******************************************************985 PP

>> DUF3378  Domain of unknown function (DUF3378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   3.7e-05      0.22      27      60 ..     112     145 ..      94     158 .. 0.86
   2 !    8.3   0.0   0.00043       2.5      23      58 ..     199     234 ..     188     242 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.7e-05
     DUF3378  27 ppyavfaakkndttItaYtSgKVlFQGknaeaeA 60 
                    +++++++++tt  ++ SgK ++ G++ e ++
  CCE29679.1 112 FAAVIMRIREPKTTALIFASGKMVVTGAKSEDDS 145
                 556899**********************999876 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00043
     DUF3378  23 rskkppyavfaakkndttItaYtSgKVlFQGknaea 58 
                 + +  p+ +++  k++++  ++ SgK+++ G++  +
  CCE29679.1 199 EPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVRE 234
                 456689************************998655 PP

>> DUF4295  Domain of unknown function (DUF4295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00011      0.67       4      36 ..      97     131 ..      96     142 .. 0.79
   2 ?   -0.2   0.1      0.15   9.1e+02      13      22 ..     148     157 ..     133     159 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00011
     DUF4295   4 vVAtlkkga..sgkkytKvIkmvKspKTGaYtFkE 36 
                 ++A  + +a  + k+++ vI  ++ pKT a +F  
  CCE29679.1  97 TIALHARNAeyNPKRFAAVIMRIREPKTTALIFAS 131
                 5555555544588******************9964 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.15
     DUF4295  13 sgkkytKvIk 22 
                  ++ky+++I+
  CCE29679.1 148 ASRKYARIIQ 157
                 6899999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1839.73
//
Query:       CCE29680.1  [L=471]
Description: related to fructosyl amino acid oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-33  116.5   0.1    2.5e-33  116.1   0.1    1.1  1  DAO            FAD dependent oxidoreductase
    3.2e-07   30.5   0.0      0.011   15.7   0.0    2.2  2  NAD_binding_9  FAD-NAD(P)-binding
    0.00064   19.9   0.0     0.0018   18.5   0.0    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.001   18.3   0.0       0.84    8.8   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0015   17.7   0.0     0.0067   15.6   0.0    1.8  2  GIDA           Glucose inhibited division protein A
  ------ inclusion threshold ------
      0.021   13.9   0.0       0.17   10.9   0.1    1.9  2  Lycopene_cycl  Lycopene cyclase protein
       0.03   13.4   0.0        1.3    8.0   0.0    2.1  2  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.1   9.7e-37   2.5e-33       2     348 ..       9     407 ..       8     410 .. 0.75

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 9.7e-37
                 EEEECTSHHHHHHHHHHHHT.T.....EEEEESSSS....TTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHH.HHHHHHHSSTTSEEEEEEEEE CS
         DAO   2 vviiGGGiiGlstAyeLarr.g.....Vtllekgdi....agsgaSgrnsgllhsglrylpeaselarlslealeel.releeelgididyrrtGllsl 89 
                 ++iiG+G++GlstA++L++r       +t+++  +     +   aS  +s+++++ ++++ +      l++ea++e+ ++ +++lg +  y ++Gl+ +
  CCE29680.1   9 ILIIGSGVFGLSTAWALTKRlQfadtsITVVDDTSTgqfpPEDCASVDSSRIIRPDYADPDYT----ALAAEAQKEWrKQGDDDLGGQGRYNESGLVLT 103
                 89****************997356799******95545433369***********99977766....9*********8888888898889********* PP

                 ESSH.........HHHHHHHHHHHHH....HHTTT..TE.EEEEH.HHHHHHSTT.STTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT.-EEEESECE CS
         DAO  90 aade.........eelealdkllall....leagl..da.ellda.eevrelepa.lpgllgalfypdtgqvdpakltaalaraaealG.veilegtev 169
                 a+ +         + + +++k+++++    ++ g   d  ++l + e ++      +++   ++++  +g++++   +++l++++ a G v +++  +v
  CCE29680.1 104 AYQDslkldagikSGMYYVKKSWENCvkvaQRDGEpaDKiKVLGStEALNSCLGTnTRPGDWGYLNSLSGWANASMGMKWLYNRVNATGrVSFVNA-KV 201
                 *94324444444445556667777778887333433333478988454555554343344567788889***************988886999997.** PP

                 EEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEE CS
         DAO 170 tgleeedgkvwgverttp.gendaadavVnaaGawsdllgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGg 267
                 + l  e++kv g  +  + g   aad v +aaGaw+++l    +l+ + + + g+vl++ ++se++ + a +   p+  +   g++ +p+ ++ ++v  
  CCE29680.1 202 EQLTTEGDKVIGA-K-LSdGKCLAADVVLVAAGAWTGEL---IDLRGR-VEASGHVLAYIEVSEEE-C-AVLSKQPIVLNLTSGLFTVPPQGNMLKVAR 292
                 ***8887888888.3.3337665779***********66...678777.66799999995666633.3.35555566888899******9877788877 PP

                 SSE...........................EETTCSS..TSCSHHHHHHHHHHHHHHSGG..G..CGEEEEEEEEEE.ETTSSEEEEEEETEEEEEEEE CS
         DAO 268 tad...........................eesgddd..pevdeedidellealrklfPq..l..gdvlrkwaGlrp.lpdglpligetpgvkglylat 332
                 +                             +  + d    + + e+  +l+e l+kl+P   l  ++ ++++ + +  + dg+ l++ +pg+kgl++at
  CCE29680.1 293 HSFgylnpgtvnhalplspslerepivvskPYTNRDGiiGRLPHEADVHLREGLAKLSPIkgLedRPWKKTRLCWYSdTKDGDWLVDWHPGWKGLFIAT 391
                 6557888888888888888888888888773444444454555555556***********55333335556666666568********99********* PP

                 ECTTTHHHHHHHHHHH CS
         DAO 333 GhsghGltlapatGkl 348
                 G sghG+++ p+ G  
  CCE29680.1 392 GDSGHGYKFLPLLGDK 407
                 ************9975 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.4e-06     0.011       2      37 ..      11      45 ..      10      84 .. 0.92
   2 !   12.5   0.1   4.3e-05      0.11     106     154 ..     183     232 ..     179     233 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.4e-06
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepg 37
                   i+G G+ Gl+++ +L +r  + ++++it++d++++g
     CCE29680.1 11 IIGSGVFGLSTAWALTKRL-QFADTSITVVDDTSTG 45
                   9*****************8.99**********9998 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.3e-05
  NAD_binding_9 106 ellarlpegvtvevhraevvdleeradgq.avlladgaslaadaVvLAlG 154
                     l +r+++  +v++++a+v++l++++d++    l+dg+ laad V +A G
     CCE29680.1 183 WLYNRVNATGRVSFVNAKVEQLTTEGDKViGAKLSDGKCLAADVVLVAAG 232
                    45566777779*****************878999**************99 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.9e-07    0.0018       1      26 [.      11      40 ..      11      44 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.9e-07
                   EE--SHHHHHHHHHHHCC....TEEEEEE- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka....gfdvllle 26
                   I+G+G++Gl++A++L+k+    + ++++++
     CCE29680.1 11 IIGSGVFGLSTAWALTKRlqfaDTSITVVD 40
                   9****************8744455899988 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0008         2       2      32 ..       8      44 ..       3      85 .. 0.70
   2 !    8.8   0.0   0.00033      0.84     199     237 ..     195     233 ..     128     262 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0008
                 SEEEE--SHHHHHHHHHHHH....HTS-EEEEE..TT CS
                 xxxxxxxxxxxxxxxxxxxx....xxxxxxxxx..xx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq....agakvtlve..le 32
                 ++++iG+G+ Gl++a  l +    a   +t+v+  ++
   CCE29680.1  8 SILIIGSGVFGLSTAWALTKrlqfADTSITVVDdtST 44
                 4556666666666666666555555556666654444 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00033
                  EEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 199 evklgtsvkeidgngekle.vvledgeeidadlvvvavGv 237
                   ++ +++v++++ +g+k+   +l+dg+ ++ad v+va+G 
   CCE29680.1 195 SFV-NAKVEQLTTEGDKVIgAKLSDGKCLAADVVLVAAGA 233
                  333.555555555555333455566666666666665553 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.2   5.2e+02       2      20 ..       9      27 ..       8      30 .. 0.90
   2 !   15.6   0.0   2.6e-06    0.0067     100     167 ..     183     250 ..     175     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.2
                EEEE-SSHHHHHHHHHHHH CS
        GIDA  2 viViGgGhAGceAAlaaar 20
                + +iG G  G+  A+a+ +
  CCE29680.1  9 ILIIGSGVFGLSTAWALTK 27
                789*************977 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.6e-06
                 HHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT-EEEETTEEEESSC CS
        GIDA 100 evteklenepnleiieeeveeliveekkvkgvvtedgetikakavviatGtflkgkihigekelsaGr 167
                 ++ ++++++  ++ ++++ve+l +e +kv g +++dg+ + a++v +a+G++    i +  +  ++G 
  CCE29680.1 183 WLYNRVNATGRVSFVNAKVEQLTTEGDKVIGAKLSDGKCLAADVVLVAAGAWTGELIDLRGRVEASGH 250
                 56678899999****************************************88888877776666665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.09   2.3e+02       2      34 ..       9      43 ..       8      59 .. 0.72
   2 ?   10.9   0.1   6.7e-05      0.17      95     143 ..     186     235 ..     177     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.09
  Lycopene_cycl  2 vvviGaGpAglslAarlte..akpglkvvlieasp 34
                   +++iG+G  gls A  lt+  + ++ ++++++   
     CCE29680.1  9 ILIIGSGVFGLSTAWALTKrlQFADTSITVVDDTS 43
                   78**********99988652244566677776555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6.7e-05
  Lycopene_cycl  95 erlv.engvklleakvesveeeeageslvvleggrkirarlvvdarglas 143
                    +r+  +++v++++akve+ + e +    + l++g+ + a +v++a g+  
     CCE29680.1 186 NRVNaTGRVSFVNAKVEQLTTEGDKVIGAKLSDGKCLAADVVLVAAGAWT 235
                    45544899**************99778899*****************755 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.014        36       2      21 ..       9      28 ..       8      43 .. 0.88
   2 ?    8.0   0.0    0.0005       1.3     138     206 ..     175     238 ..     154     257 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.014
                   EEEE--SHHHHHHHHHHHHT CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaea 21
                   +++iGsG+ GL+ A +++++
     CCE29680.1  9 ILIIGSGVFGLSTAWALTKR 28
                   79************999875 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0005
                    .HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG.. CS
  FAD_binding_2 138 vtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgral 206
                    ++    ++ l++++++ g   + ++++++L++e+++v Ga ++   +g+   ++a+ v++a+g++ ++l
     CCE29680.1 175 ANASMGMKWLYNRVNATGRVSFVNAKVEQLTTEGDKVIGAKLS---DGK--CLAADVVLVAAGAWTGEL 238
                    55555678899*******888999****************999...454..35588********99844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3517.67
//
Query:       CCE29681.1  [L=820]
Description: uncharacterized protein CPUR_03528 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-10   40.2   0.0      5e-10   39.2   0.0    1.6  1  Surp      Surp module


Domain annotation for each model (and alignments):
>> Surp  Surp module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   2.8e-14     5e-10       3      52 ..     349     400 ..     347     401 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 2.8e-14
                 HHHHHHHHHTT-S.SHHHHHHHH...T--TTSGGGSTT.STTHHHHHHHHHH CS
        Surp   3 iIkktAqfVarnGkeFeqklrer..ernnpqFaFLkdpdhpyhayYrwrvde 52 
                 +I kt++ V ++G eFe+ l++r  ++++ ++a+ +d +++  ++Yrwr+++
  CCE29681.1 349 LINKTIEGVLEHGAEFEALLMSRpeVQREEKWAWIWDARSQGGIWYRWRLWQ 400
                 8**********************87788***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5613.10
//
Query:       CCE29682.1  [L=547]
Description: related to putative copper-activated transcription factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.18   12.2  36.6       0.14   12.5   3.6    4.4  4  Metallothio_PEC  Plant PEC family metallothionein


Domain annotation for each model (and alignments):
>> Metallothio_PEC  Plant PEC family metallothionein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.5   0.00054       9.8      40      67 ..      16      42 ..       9      48 .. 0.80
   2 ?   -1.6   0.9       0.2   3.5e+03      28      40 ..     193     205 ..     168     225 .. 0.60
   3 ?   12.5   3.6     8e-06      0.14      31      47 ..     378     394 ..     360     409 .. 0.61
   4 ?   10.2   5.1   4.1e-05      0.73      28      51 ..     509     532 ..     502     544 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00054
                     XXTTSXXTTXXXXXXXXSSXSXXXXXSS CS
  Metallothio_PEC 40 hCgCnpCtCakseastgvgkanCkCGeg 67
                     h    pC+Ca  +a+   +k++C+CG++
       CCE29682.1 16 HPSSRPCACAAVTAA-IPRKQKCRCGTS 42
                     666789***998875.46999*****86 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.2
                      TT-XXSXBTTTBX CS
  Metallothio_PEC  28 gdgehktCsCGeh 40 
                      ++  ++ C+ G  
       CCE29682.1 193 SGTSGSCCGGGSS 205
                      2223333333333 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 8e-06
                      XXSXBTTTBXXTTSXXT CS
  Metallothio_PEC  31 ehktCsCGehCgCnpCt 47 
                        ++CsCG+ C+C  C+
       CCE29682.1 378 TSHHCSCGDTCQCVGCA 394
                      33445555555555554 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 4.1e-05
                      TT-XXSXBTTTBXXTTSXXTTXXX CS
  Metallothio_PEC  28 gdgehktCsCGehCgCnpCtCaks 51 
                       +ge + C CG++C+C  Ct   +
       CCE29682.1 509 CSGETMSCLCGDDCQCIGCTIHNN 532
                      5678999***********997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3850.85
//
Query:       CCE29683.1  [L=407]
Description: related to RNA helicase HEL117 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.3    8.7  10.5       0.21   12.1   0.8    2.4  2  ZapA      Cell division protein ZapA


Domain annotation for each model (and alignments):
>> ZapA  Cell division protein ZapA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   3.2      0.04   7.2e+02      43      76 ..     253     291 ..     246     304 .. 0.62
   2 ?   12.1   0.8   1.1e-05      0.21      15      84 ..     305     380 ..     302     390 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.04
        ZapA  43 lseerllvmaaLnladellklkkraeeleaele.......e 76 
                   + + + + +L l dell++ ++a+++  e+        +
  CCE29683.1 253 RKTAKSATLQDLSLRDELLQEDRDAQRQ--EIRqarlqdrA 291
                 566777889999*******876666333..33322333332 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.1e-05
        ZapA  15 eegeeeylreaaklvdekikeireagg.nlseerllvmaaLnladellklkkraeeleaele.....elaerleel 84 
                 e+g +e+ +e  klv+ek++++r++++  +   ++ +m + +   ++ k++++++  ++e +       ++++ee+
  CCE29683.1 305 EAGTRERALEKKKLVNEKMRHFRDKSPpGMEVGEAQLMGGGDSVEDYKKMREKEKGRKSERQirreeFERAKMEEM 380
                 567789999999***************88**9**********************9999988866664222555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1437  (0.0801495); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2807.48
//
Query:       CCE29684.1  [L=290]
Description: uncharacterized protein CPUR_03531 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-08   35.2   0.1    4.4e-08   33.6   0.1    1.8  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   2.5e-12   4.4e-08       2     200 ..      12     214 ..      11     222 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 2.5e-12
                 HHHSEEEETTSS-HHHHHHHHHHHHHHHHHCHTTCCSEEEEECEEESTTCCCEECCCHHCHHHHTTH..............HHHHHHHHHHHTSCEEEE CS
        PhyH   2 eedGylviegflsaeevealraeiealldralesgdkidfffeekaaadedglleksinkvghflhp..............rkvadlvrailgqdvyva 86 
                 ++dG+++i++ +s+ +++alr++ ++  ++  +sg+  ++   +k++   d   e+ i  ++h+ hp              + + +lv+ +l++++ + 
  CCE29684.1  12 DRDGFVIIRDIISEPQLAALRQASHKA-EQLSRSGQWPHIRTVGKQFPPWDFSPEHGIWGIQHLMHPelpghdiftqqyfsEDILGLVKVLLQCTDQD- 108
                 89************************7.7777777777777778888775544489******************999888888888888888888865. PP

                 EEEEEEEEEEEE-TTTCB-EEEEE-SGGGST.EES.....GCCEEE...EEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTSCCCTTTGHG CS
        PhyH  87 avlqsmyqdifkqpkiGgevqpwHqDstflp.tdp.....eesvvg...vwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkede 176
                  v+  +   +   p++  e  +wH+D+  ++ t       +   +g   +      a  e   l ++PGSHk+++++l+ r  ++ +          + 
  CCE29684.1 109 LVMELFN--MLVRPETDFEL-RWHRDDIPAEaT-AeeemaR---LGrpsFHAQYNLALWEDRSLVVVPGSHKRARSELE-RCADPLER---------AL 190
                 3444444..999**999999.**********62.3243331...2233333333333346679**********888544.33333333.........34 PP

                 SCEEEE.BTTTEEEEEETTSEEEE CS
        PhyH 177 eeavpvevkaGdavlfhgrllHgs 200
                  +   ve+ aGd+v+++ ++lH++
  CCE29684.1 191 PGQLVVELGAGDIVFYDNNILHRG 214
                 67788999**************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2289.52
//
Query:       CCE29685.1  [L=330]
Description: uncharacterized protein CPUR_03532 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-51  174.8   0.7    3.9e-50  171.1   0.7    1.9  1  NMO           Nitronate monooxygenase
    9.1e-12   44.6   1.6    1.7e-10   40.5   1.6    2.1  1  IMPDH         IMP dehydrogenase / GMP reductase domain
     0.0024   17.0   0.9     0.0039   16.3   0.9    1.3  1  FMN_dh        FMN-dependent dehydrogenase
  ------ inclusion threshold ------
      0.028   13.9   0.1       0.14   11.6   0.1    2.0  2  His_biosynth  Histidine biosynthesis protein
      0.039   13.1   0.6      0.095   11.8   0.6    1.7  1  Glu_synthase  Conserved region in glutamate synthase


Domain annotation for each model (and alignments):
>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   0.7   1.1e-53   3.9e-50       3     328 ..       6     309 ..       4     312 .. 0.86

  Alignments for each domain:
  == domain 1  score: 171.1 bits;  conditional E-value: 1.1e-53
         NMO   3 lltellkikppvvqpgmggiskarLaaavsnaGgLGvlasg.yltaDrlakeirkvkaltdkPfgvnlflpkkdaadraekykkeleeaalelnieegv 100
                  lt+ l+i+ pvvq+gm  + +a+La+avsnaGgLG++ +    t+  l++eir+ + lt+kPf vn+ l  + + ++         +a +++ i eg+
  CCE29685.1   6 ELTKRLGIRVPVVQGGMMHVGTADLASAVSNAGGLGIITALiFPTPAALRDEIRRCRTLTKKPFAVNMTLLPAMVPPD--------YGAYAQAIIDEGI 96 
                 5788999*******************************96415699*********************99887777777........3567788889999 PP

         NMO 101 rfyrkvevvldekvevvsfgfglpteevvarlkeagvvliptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavdiPviAa 199
                 +              vv + +g  +  v+ +lk+ag++++   +++ +a+ + ++G D l ++G e  Gh G+ ++     f L+ ++++ +++P iA 
  CCE29685.1  97 K--------------VVET-AGNSPGPVITQLKKAGIIVLHKCTTIRHAQSAVKLGVDFLSIDGFECAGHVGESDI---TNFILLSKARQTLKVPFIAS 177
                 9..............6655.5666699*********************************************6666...69****************** PP

         NMO 200 GGiidrrgvaaaLalGAsgvqigtrfLltkesdakdahkkklleakl.ddteltsavsGrpaRalatelleelee..akiatlalpeahelakk..ira 293
                 GG+ d++g+aaaL lGAsgv +gtrf++t e++++   k +++   + d t+l ++      R  ++++  e  +  ++  t ++ e+ +l  +   ++
  CCE29685.1 178 GGFADGHGLAAALLLGASGVNMGTRFMATIEAPVHSNIKDAIVRGDEhDTTLLLRRWR-NTSRLYKNKVALEALKieQESPTGEFSEVAHLVSGkrGKE 275
                 ***************************************9999876516677788888.99******99654443345556667777777776633445 PP

         NMO 294 alveagnteegllwagqgidrldkiisvkeLiesL 328
                   v++ ++e g+  +g +++ ++++++++ L++ +
  CCE29685.1 276 VFVNG-DPEYGVWTTGPVMGLINDVPTCEVLVKRI 309
                 55555.**************************987 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   1.6   4.6e-14   1.7e-10      24     249 ..       4     213 ..       1     220 [. 0.79

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 4.6e-14
                 -EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS..-HHHHHHHHHHHHTSTTSXBX..TTSXB-EEEEE-SSTTHHHHHHHHHHTT-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  24 ktkltkkiklniPlvsaamdtvtesemAialareGgigvihknl..sieeqaeevkkvkrspnaakd..ekgrllvgaavgvkedalervkalveagvd 118
                  t+ltk++ +++P+v   m  v  +++A a++++Gg+g+i   +  ++ +  +e+++ +   + +k+  + +  l  a v    d+ + ++a++++g+ 
  CCE29685.1   4 VTELTKRLGIRVPVVQGGMMHVGTADLASAVSNAGGLGIITALIfpTPAALRDEIRRCR---TLTKKpfAVNMTLLPAMV--PPDYGAYAQAIIDEGIK 97 
                 699*************************************9876114444455666665...444442133333344444..457999*********98 PP

                 EEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 119 vlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsiCttrvvagvGvpqltAvaevaeaakkagvpviaDGGik 217
                 v  v++a g+s +   +++++kk+   + ++    +t   a++ ++ g+d++ +    G  C       vG + +t  +  ++a ++ +vp ia GG  
  CCE29685.1  98 V--VETA-GNSPG--PVITQLKKAG--I-IVLHKCTTIRHAQSAVKLGVDFLSI---DGFECA----GHVGESDITNFILLSKARQTLKVPFIASGGFA 181
                 7..5676.45443..4566777666..3.7778888888888888888888876...355554....568***************************** PP

                 SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 218 ysgdivkAlaaGadavmlGsllagteEspgev 249
                   + ++ Al +Ga+ v +G  + +t E+p + 
  CCE29685.1 182 DGHGLAAALLLGASGVNMGTRFMATIEAPVHS 213
                 *****************************775 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.9   1.1e-06    0.0039     219     307 ..     119     207 ..     109     229 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.1e-06
                 EEEEEE-SHHHHHHHHHTTESEEEE--..GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHH CS
      FMN_dh 219 lvvKGvltaedakraveaGvdgivvSN..HGGRqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpflygl 307
                 +v+    t + a+ av++Gvd + +      G+  ++ ++ +  L + ++ ++  ++ +++gG+  G   + Al lGA++v +G  f+  +
  CCE29685.1 119 IVLHKCTTIRHAQSAVKLGVDFLSIDGfeCAGHVGESDITNFILLSKARQTLK--VPFIASGGFADGHGLAAALLLGASGVNMGTRFMATI 207
                 56666678889999999999998887522679999999999999****99997..*****************************9998765 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     4e-05      0.14     178     223 ..     158     203 ..     146     207 .. 0.87
   2 ?   -0.7   0.0      0.22   7.9e+02     129     171 ..     269     311 ..     238     314 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4e-05
                   --HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTCSEEEESHHH CS
  His_biosynth 178 pdleltkelaeavkipviasGGvgsledlkelksegvdavivgsal 223
                    ++ l+++ ++++k+p+iasGG ++   l+++   g+++v +g+ +
    CCE29685.1 158 TNFILLSKARQTLKVPFIASGGFADGHGLAAALLLGASGVNMGTRF 203
                   6888999**************************9999999999866 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.22
                   EEEECEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTT CS
  His_biosynth 129 Darrgykvaikgwreetgldavelakkleelgageilltdidr 171
                     +rg +v+++g  e   +++  ++  ++++  +e+l+  i+r
    CCE29685.1 269 SGKRGKEVFVNGDPEYGVWTTGPVMGLINDVPTCEVLVKRIER 311
                   4456678888888888888888888888888888888888877 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   2.6e-05     0.095     271     309 ..     168     206 ..     110     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.6e-05
                   -GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHH CS
  Glu_synthase 271 lrdrvsliadGglktgadvvkalalGAdavgigtaalia 309
                      +v  ia+Gg+  g+ ++ al+lGA  v++gt  + +
    CCE29685.1 168 QTLKVPFIASGGFADGHGLAAALLLGASGVNMGTRFMAT 206
                   34478889**************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2590.19
//
Query:       CCE29686.1  [L=689]
Description: uncharacterized protein CPUR_03533 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 4719.97
//
Query:       CCE29687.1  [L=1504]
Description: uncharacterized protein CPUR_03534 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-82  278.1   0.7      1e-82  278.1   0.7    2.1  2  Med13_C      Mediator complex subunit 13 C-terminal domain
    1.6e-23   83.6   0.2    3.9e-23   82.3   0.2    1.6  1  Med13_N      Mediator complex subunit 13 N-terminal
    6.1e-11   42.6  10.4    2.1e-05   24.4   0.0    3.6  4  MID_MedPIWI  MID domain of medPIWI


Domain annotation for each model (and alignments):
>> Med13_C  Mediator complex subunit 13 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.5      0.87   5.2e+03     161     220 ..     731     789 ..     709     831 .. 0.51
   2 !  278.1   0.7   1.7e-86     1e-82       2     330 .]    1193    1493 ..    1192    1493 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.87
     Med13_C 161 sssstplstPqdsscthilvfptsattqstpttfasedanaedtpedsseeddsdallvd 220
                  ++ ++ + P+  +c+++l   t   +  + ++  +++ +++++ e ss ++++d + +d
  CCE29687.1 731 PKRRSKHHNPDGLQCSSFLASLTRTGPLFSGSSPIKSN-SQNSDGELSSCDSEQDDSSSD 789
                 44455666677777766655444444422222222222.222222333333333333333 PP

  == domain 2  score: 278.1 bits;  conditional E-value: 1.7e-86
     Med13_C    2 aPpfvLapplpkkiqfklaaepssdlleegsvLhvaYclsedqrWllaawtDnrGelletasinlnrrrrkkararrevlqelWeftlgimsktsvp 98  
                  aP++ L++ lp+ i+fkl  +ps +l +e+s++h+aY++s d+rW++aawtD+rG+++ tas++++r++r+ +r r+ev++e+W+ tl+++++ +v+
  CCE29687.1 1193 APAIRLEQALPRIIEFKLVHTPSASLAKENSCIHIAYAQSVDDRWITAAWTDDRGNQQATASYCMGRKGRPLSRLRNEVAHEIWDSTLDLVAACKVH 1289
                  8************************************************************************************************ PP

     Med13_C   99 WRlvigrlGrmghgelkaWssllskknlqkpsilsacLvsvepdpsLrlmpdavtpdsrfgqsssstplstPqdsscthilvfptsattqstpttfa 195 
                  WR++i+++G+m+ +e+++W +l+ ++ +++   +++ L++v+++psL+l+p+av+ +++ +   +++  s  q++     lv++++++t +t +  +
  CCE29687.1 1290 WRVIITKCGPMDRDEIEFWIDLARTEIKAS---VTLILMTVDTNPSLQLIPPAVKLPQAATAPLNTNLGSAAQPN---NNLVVSPDQST-AT-PGVS 1378
                  ************************999999...*******************99999777722222222223333...34677777776.23.3333 PP

     Med13_C  196 sedanaedtpedsseeddsdallvdltdetwgvllshrlnnspsltelqqplasGylvtaptgpeaendcpvvlkvsLlhtssvkssksshpldska 292 
                  ++++         ++ +d d +l+d+td+twg++l hrln+s+s+t+lq++l sGyl++++  +++ +d ++ ++++L+ht ++++s+         
  CCE29687.1 1379 ETGT---------ADTPDMDVILLDVTDQTWGAVLGHRLNSSASITDLQPALISGYLIKRT--GPRVEDPLTAMEINLVHTDASPRSY--------- 1455
                  3332.........333589******************************************..*************************......... PP

     Med13_C  293 tedvLrevleqYraLswLarargtgdrrs.clPvHlaal 330 
                   e +Lre+l  +r+L++L+rarg++ r + + P+H+aa+
  CCE29687.1 1456 -EPLLREMLSHFRGLATLSRARGVVARDTdVRPLHIAAA 1493
                  .***********************888888*******97 PP

>> Med13_N  Mediator complex subunit 13 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.2   6.5e-27   3.9e-23       9     311 ..       8     378 ..       3     379 .. 0.78

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 6.5e-27
     Med13_N   9 TnvyalddlssIaYrvYtpketddnsaseaarrsllelqlrslsplvlvdldrlsLwvFsfgksedptdakdele..klflkgsglsrsssgtitpsd. 104
                 Tn   l+++ssI++rvY+p+   ++++ + a +   e +lr++++ v  d++r+++w+F ++ + +++++++e+   +l +  + l + ++g + p + 
  CCE29687.1   8 TNTLVLNNISSISFRVYEPTAEKSQFFGLIAVE--IESRLRERGHIVYYDASRRCIWTFKVQRKAGSSNQGSEDLsqSLGSHIHLLASGEEGIFDPGSl 104
                 9****************************9988..8*************************77777755555555454444444444555677777774 PP

     Med13_N 105 ....aaasgdsskpgqsetq......................................................iyalFlkAvrkrislnlsrsrgvip 145
                      +++g +s+      +                                                      iy+ F+ A    is   s+++g ip
  CCE29687.1 105 qkprVVPQGGLSST-----SsapsalavdqsqrqkpgsssqievshlqeqdqtitvvptvdskgaqseptsskvIYENFIIATVLTISTAFSKRSGSIP 198
                 44443333333333.....233333566666666777777779999999999999999999999999999***************************** PP

     Med13_N 146 lgnrtl.......sseedaeesegsesllrlrpqltesgdlllslstikqpgllrltsslplssslallsgtpvyLaPsGirA..rllst.sgptsklt 234
                 l++rtl        ++    ++e ++ + +  +++t+ g l+lsl ++  +g+l  ++ l l      + g+ ++ aP G++A  +l s+ +  ts+  
  CCE29687.1 199 LDYRTLllseqvlGNAGLGYNGEQKPTIGTFKAYMTSTGNLVLSLGFSVCRGMLLCNETLNLGP---ASLGNRILAAPFGMIAgnQLPSPvEVGTSSMA 294
                 *************99******************************9999999777777455555...699*************6667777544333333 PP

     Med13_N 235 eqsesslltlpaensw.............elllewlkeshgidl...edeaWvevepklahlngqtssiasndqgedkgkrilWPaeLcflqd 311
                 ++   +                        +  + l ++ gi+     d  W  v ++ +++  +t+++++ +q  +++  + WP +Lcf++ 
  CCE29687.1 295 HTPNTQV--------LsfrgapdvqdspwRQTCSKLLQFRGIARsrlADCPWMNVLVS-NSKFYDTKPDHKRQQLANSTVMFPWPGALCFRKK 378
                 3322222........12222333345677444444444446665455788********.8888999999999******************876 PP

>> MID_MedPIWI  MID domain of medPIWI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.28   1.7e+03      35      71 ..      84     121 ..      76     180 .. 0.51
   2 ?   -3.6   0.2       1.3   7.6e+03     108     135 ..     768     786 ..     735     827 .. 0.47
   3 !   24.4   0.0   3.6e-09   2.1e-05       1      87 [.    1012    1095 ..    1012    1102 .. 0.72
   4 !   24.1   0.9   4.6e-09   2.8e-05     149     244 ..    1091    1184 ..    1066    1185 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.28
  MID_MedPIWI  35 LGqHrpiskvlrdgilrvgktaakkl.seepvsdwflk 71 
                  LG+H ++  + ++gi + g+ ++ ++  + ++s   ++
   CCE29687.1  84 LGSHIHLLASGEEGIFDPGSLQKPRVvPQGGLSSTSSA 121
                  67776666666666666666662222333333333332 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.3
  MID_MedPIWI 108 sttsassssssssssssssss..ssaqksq 135
                  +++++  +            s  +s+q+++
   CCE29687.1 768 NSQNSDGEL-----------SscDSEQDDS 786
                  111111111...........1111111111 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 3.6e-09
  MID_MedPIWI    1 kdvayvvvcPdneallsaaksFfrdLsavYEsCrLGqHrp.iskvlrd.gilrvgktaakklseepvsdwflk.ssnselssklklyaqv 87  
                   kd+a v+v+P  + + +++k+F+++  +vYE+ rLG+      +  +d gil  +  +      ++ s+  ++   +s l+s +  ++++
   CCE29687.1 1012 KDIASVCVFPGCKGMSDSVKTFLSRVKSVYEVLRLGSVDNlALSPDMDdGILPYEVDQ------TSASPATTAtGHGSALASSMETLRDA 1095
                   9************************************988644444444776655555......55555555533334555555555555 PP

  == domain 4  score: 24.1 bits;  conditional E-value: 4.6e-09
  MID_MedPIWI  149 iptdg.s.deeteppaiVvYiVd.PFsseeeaesslsssvwtlgllrcylemlqslpesirnnlvlQivPleyilqpseerqvvsq..hlkslAfs 239 
                      d+ s  +  ++ ++Vv+ V  P   +  +  + + +++    +  y+++l + +e + n++vlQ+v+ + + +p  ++ vv+   +l +l+++
   CCE29687.1 1091 TLRDAlSnLAV-SDTNVVVFFVYvPS--NPGSIVEACVAFQQ--FFDSYQKELLAKKEPVSNEIVLQLVSADILSSP--TSVVVTPsqELVKLCLE 1179
                   33344442333.45555555554166..78877888888887..********7666778******************..777777678******** PP

  MID_MedPIWI  240 VYsqc 244 
                    Y++c
   CCE29687.1 1180 TYDRC 1184
                   ***** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 9618.31
//
Query:       CCE29688.1  [L=643]
Description: uncharacterized protein CPUR_03535 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-11   42.9   1.4    8.1e-11   41.5   1.4    1.8  1  NUC153       NUC153 domain
    1.7e-07   31.8   0.3      0.029   15.3   0.0    4.6  4  WD40         WD domain, G-beta repeat
      0.003   17.8   0.0      0.013   15.8   0.0    2.0  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.032   13.8   0.1      0.068   12.7   0.1    1.5  1  PPS_PS       Phosphopantothenate/pantothenate synthetase
      0.059   12.8   0.6      0.092   12.2   0.6    1.2  1  DUF3246      Protein of unknown function (DUF3246)


Domain annotation for each model (and alignments):
>> NUC153  NUC153 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   1.4   2.3e-14   8.1e-11       1      29 []     495     523 ..     495     523 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 2.3e-14
      NUC153   1 DpRFkalFedhdFaIDptspeFkktnpmk 29 
                 D+RF+ lFed++F +D+ s eF+++np++
  CCE29688.1 495 DDRFAQLFEDEEFKVDEMSKEFQLLNPST 523
                 9**************************96 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0      0.01        37      14      31 ..      58      76 ..      53      83 .. 0.79
   2 !   15.3   0.0     8e-06     0.029       7      38 .]     240     272 ..     235     272 .. 0.86
   3 ?    4.1   0.0     0.027        96      22      38 .]     302     317 ..     282     317 .. 0.74
   4 ?    0.6   0.0      0.33   1.2e+03      12      28 ..     332     348 ..     325     355 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.01
                EEEEEETTSSEEE.EEETT CS
        WD40 14 tslafspdgawla.sGsdD 31
                +++++s dg+w++ +G+++
  CCE29688.1 58 NCIRVSEDGDWVMsTGTYK 76
                799********97356555 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 8e-06
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l GH + vtsl+f+p+g  la+Gs  g v ++d
  CCE29688.1 240 LAGHdGEVTSLSFNPSGLSLATGSSTGIVQLFD 272
                 569*666****************8788887776 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.027
                 SSEEEEEETTSEEEEEE CS
        WD40  22 gawlasGsdDgtvriWd 38 
                  + ++s++ ++ ++iWd
  CCE29688.1 302 ERKIMSAD-KRIIKIWD 317
                 44567666.*******9 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.33
                 SEEEEEEETTSSEEEEE CS
        WD40  12 svtslafspdgawlasG 28 
                 +++++a+++d+ +l+++
  CCE29688.1 332 DINDVAWCKDSGMLLTA 348
                 499********999986 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.6e-06     0.013       6      67 ..     213     273 ..     211     279 .. 0.77
   2 ?   -3.2   0.0         3   1.1e+04      38      54 ..     330     346 ..     308     351 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.6e-06
  ANAPC4_WD40   6 tmDLiAlatedgellvf..RlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrllda 67 
                  t +L+A++t+ g ++    R + +    +   ++d+ev+sL+++p+g  La + s g v+l+d 
   CCE29688.1 213 THNLLAFGTSIGTVEFWdpRSKSRAALLA---GHDGEVTSLSFNPSGLSLATGSSTGIVQLFDL 273
                  56677777777766553225555544444...89***************************996 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3
  ANAPC4_WD40  38 dsevrsLaWkpdgklLa 54 
                     ++++aW +d  +L 
   CCE29688.1 330 VVDINDVAWCKDSGMLL 346
                  44566677766655554 PP

>> PPS_PS  Phosphopantothenate/pantothenate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.9e-05     0.068      31      81 ..     430     487 ..     420     504 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.9e-05
      PPS_PS  31 gaklevNlfyrteeRvekiaellkeagaeevlgleeda.......ripeleseRakvs 81 
                 +akl +N + ++e+Rv++i++ ++++ a+++ g+++ +       +i + +++Ra+v+
  CCE29688.1 430 QAKLIINPYAWEEDRVKRIKDKIEKERASRIRGSKKVKvnqkladKILKKQENRATVD 487
                 7999***************************999887643334444555556666665 PP

>> DUF3246  Protein of unknown function (DUF3246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   2.6e-05     0.092      79     130 ..     520     569 ..     457     581 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.6e-05
     DUF3246  79 vPtgtttidptssgtitsiptasddddetdcetetitvepsivtvttgvtkt 130
                 +P +t + +p+    +t   ++  ddd +d ++e+ t +p+   +t+ vt t
  CCE29688.1 520 NP-STQVEQPVDPKAPTRYQAKDSDDDASDSDDEIRTAKPT-DDITMRVTST 569
                 44.44444555555555555555555555555555555555.4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4799.90
//
Query:       CCE29689.1  [L=926]
Description: uncharacterized protein CPUR_03536 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0066   16.5  22.4     0.0066   16.5  22.4    5.3  5  TPR_MLP1_2  TPR/MLP1/MLP2-like protein
  ------ inclusion threshold ------
      0.022   15.1   2.7      0.022   15.1   2.7    6.2  7  Csm1_N      Csm1 N-terminal domain


Domain annotation for each model (and alignments):
>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5  22.4   7.4e-07    0.0066      13     115 ..     157     259 ..     151     262 .. 0.95
   2 ?   -1.7  20.9      0.31   2.8e+03       2     115 ..     251     369 ..     250     378 .. 0.80
   3 ?   -7.1  12.7         2   1.8e+04       2      92 ..     322     409 ..     321     432 .. 0.54
   4 ?   -7.3  12.7         2   1.8e+04      14     114 ..     543     642 ..     526     652 .. 0.74
   5 ?   -0.2   0.6      0.11     1e+03      15      44 ..     627     656 ..     619     677 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.4e-07
  TPR_MLP1_2  13 lkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekr 111
                 ++eek++a+a+  +l+++l+ q++ ++ea+qk+e+e ++  +    l+a+ + ++++ +e +el ++++++k+e+e+s+e  ++   ++++  ++l++ 
  CCE29689.1 157 ADEEKAHAKAESDSLRKELQRQQAKLQEAEQKFETERTNRQALEGRLAAADKAHSSICQENSELLEQVDKLKEEVETSKERAKTLNGKYRTYRAKLNEA 255
                 6899********************************************************************************999999999999998 PP

  TPR_MLP1_2 112 iedl 115
                 i + 
  CCE29689.1 256 IVEQ 259
                 8775 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.31
  TPR_MLP1_2   2 elksleeeikslkee.keeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreel....nelkaeiaelkaeaesakaeleeseeswe 95 
                 +l+++  e+++l ++ k+ +++ +q l+++ e+     k+ +q  +  ++k a+  + l++lr ++    +e ++ i++lk +  +  ++l  +++  +
  CCE29689.1 251 KLNEAIVEQQRLFTQaKDFYNQSIQDLRQEHEARIIDSKAIEQALADSVQKRAKIKECLEELRLDFeqqvQEKQEAISKLKMKSIEQDQALISEKKVSD 349
                 5666777777776550556999****************************************9766444488888888899888888899999999999 PP

  TPR_MLP1_2  96 eqkeelekelselekriedl 115
                 e +++le+e +     ++++
  CCE29689.1 350 ELRDQLETERTRNGDAMKEV 369
                 99999998877665555555 PP

  == domain 3  score: -7.1 bits;  conditional E-value: 2
  TPR_MLP1_2   2 elksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleesee 92 
                 e++++ +++k+++ e+++a   ++k+ ++l+ q e  ++ + +  +e    ++ +kelq++ +  +  + + +el a a++  ++lee+ +
  CCE29689.1 322 EKQEAISKLKMKSIEQDQALISEKKVSDELRDQLETERTRNGDAMKE---VSSSMKELQDFMTARALEQPQERELPAHAQQRLHALEEAVQ 409
                 45555555555555666666666666666666666555555543333...34444444444444455555555555555555555555444 PP

  == domain 4  score: -7.3 bits;  conditional E-value: 2
  TPR_MLP1_2  14 keekeeaeaklqklqedlekqaeiakeaqqkYer.elvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekr 111
                 ++ ++ + +++++l + l +++e  + aq   e+   v+  e  ++ +++  ++++++ ++a+l+++  ++ + +e+ + +   +++  ++  ++++  
  CCE29689.1 543 DNAAQMYSTRFEQLSKSLATKEEGKQLAQAMMEEfRFVLDHELCRDKAKAEHDSKQTQYTLANLESQIRTVIERFERDKTEGGDTES--QESNASSKHM 639
                 456778889999999999999999999999888757899999999999999999999999999999999999988877765544443..3444455555 PP

  TPR_MLP1_2 112 ied 114
                 i+d
  CCE29689.1 640 IQD 642
                 555 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.11
  TPR_MLP1_2  15 eekeeaeaklqklqedlekqaeiakeaqqk 44 
                 +e++e++a  +++ +dl+++a+ +++   +
  CCE29689.1 627 TESQESNASSKHMIQDLQAEAKATADLRHR 656
                 556666666677777777777766665554 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   4.8      0.23     2e+03      38      65 ..     163     190 ..     146     197 .. 0.76
   2 ?   15.1   2.7   2.5e-06     0.022       9      62 ..     197     250 ..     193     259 .. 0.90
   3 ?   -1.2   0.1      0.31   2.8e+03      26      52 ..     257     283 ..     249     301 .. 0.72
   4 ?   -3.3   5.3       1.3   1.2e+04      33      55 ..     317     340 ..     292     357 .. 0.72
   5 ?   -2.1   0.1      0.56     5e+03      40      57 ..     398     415 ..     389     420 .. 0.60
   6 ?   -1.9   0.4      0.48   4.3e+03      35      57 ..     527     549 ..     522     571 .. 0.57
   7 ?   -1.9   0.4      0.49   4.4e+03      40      63 ..     600     623 ..     590     631 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.23
      Csm1_N  38 tkdqeiesLkeqlaeleekvkeleerrk 65 
                   + e  sL+++l+  ++k++e+e++ +
  CCE29689.1 163 HAKAESDSLRKELQRQQAKLQEAEQKFE 190
                 4566888999999999999998888755 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.5e-06
      Csm1_N   9 esVqerldsAdllvsklvhENsvLsqkletkdqeiesLkeqlaeleekvkelee 62 
                 ++++ rl +Ad + s + +ENs L +++++ ++e+e+ ke+ ++l+ k +    
  CCE29689.1 197 QALEGRLAAADKAHSSICQENSELLEQVDKLKEEVETSKERAKTLNGKYRTYRA 250
                 78999***************************************9988876655 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.31
      Csm1_N  26 vhENsvLsqkletkdqeiesLkeqlae 52 
                 v+  ++ +q+ + ++q i+ L+++ ++
  CCE29689.1 257 VEQQRLFTQAKDFYNQSIQDLRQEHEA 283
                 555567788889999999999987665 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.3
      Csm1_N  33 sqkletkdqeiesLkeq.laelee 55 
                 +q+++ k++ i++Lk + +++ ++
  CCE29689.1 317 EQQVQEKQEAISKLKMKsIEQDQA 340
                 588888888999888431444443 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 0.56
      Csm1_N  40 dqeiesLkeqlaeleekv 57 
                 +q++++L+e +++  + v
  CCE29689.1 398 QQRLHALEEAVQNCATTV 415
                 455556666665555544 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 0.48
      Csm1_N  35 kletkdqeiesLkeqlaeleekv 57 
                 +l ++++ i  Lk   +++ +  
  CCE29689.1 527 QLTQREKTIDDLKTVCDNAAQMY 549
                 55666666666665555444333 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 0.49
      Csm1_N  40 dqeiesLkeqlaeleekvkeleer 63 
                 +  + +L+ q+ ++ e+ ++ +++
  CCE29689.1 600 QYTLANLESQIRTVIERFERDKTE 623
                 445677888888887777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (926 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2487  (0.138714); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.36u 0.33s 00:00:01.69 Elapsed: 00:00:00.53
# Mc/sec: 5304.86
//
Query:       CCE29690.1  [L=479]
Description: probable alanine transaminases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-38  131.1   0.0    7.2e-38  130.7   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
       0.13   10.8   0.0       0.23    9.9   0.0    1.3  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   0.0     8e-42   7.2e-38      34     352 ..     105     461 ..      90     463 .. 0.89

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 8e-42
                    HTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTE CS
  Aminotran_1_2  34 ggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfh 129
                     g++  y+ + g+p+ +e +a fl r+ + + +++  + +++Ga+++ ++l  ++++++ + i +p p y+ y+  l l +++ v+y l+++++++
     CCE29690.1 105 VGSVGAYSASAGAPAIKESIAAFLERRDGFPADPS-KIYLSTGASSGVNTLLHVICADKNSGIMIPIPQYPLYTATLALLDAKAVPYYLDESQSWG 199
                    578899*****************************.************************************************************ PP

                    E-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS..HTHHH.....HGGSTTSTT..EEEE CS
  Aminotran_1_2 130 ldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl..davat.....ranveeepn..lliv 216
                      +e +++a+++ +++ + +++i++ +p NPtG+ +++++++ ++d+ak+ nl+++ De+Y++ vf  +  ++  +       n  +++n  l+ +
     CCE29690.1 200 TSFETIKAAYEKGKADGADVRCIVIINPGNPTGASLSEKDVRSVIDFAKQENLVIMADEVYQTNVFVGQfhSFKGVlrtmqKENPGKYDNieLASL 295
                    ***************999*********************************************99987767777766665544444555599**** PP

                    EESSSTT.SSGGG-EEE..EEE.EHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHHHHS.TEEE CS
  Aminotran_1_2 217 gslsKaf.GlaGeRvGy..ilg.naavvsqlrklsrpfls.ssllqaavaaalsdallkqs.......eleemrqrlqkrrkelrdeLael.glkv 299
                     s+sK + G  G R Gy  ++g +++v   + k+++ +l  + ++q +v  +++ +++ +        e ++    l +r++ l++++ +  g+++
     CCE29690.1 296 HSVSKGMvGECGHRGGYfeLVGfSPDVEAEIYKFVSIMLCaPVIGQCLVELMVNPPKQGEPsyelyqkEYSAIFNGLRERATALHKAFGKMeGVDC 391
                    *******9*********44466788*************999****************988899998889999999999**********999***** PP

                    ECCSCSSEEEEEETHH...CHHHHHHH............HHHTCTEEEEEGGGGTS...TTEEEEEC.TTS- CS
  Aminotran_1_2 300 lasqsgmflltdlsae...takelskk............Lleevgvyvtpgtsftv...pgrlRitv.Aglt 352
                     ++q+ m+l+  ++ +    + ++  +            +le  gv v++g+ f+    + ++R t+ A +t
     CCE29690.1 392 AEPQGSMYLFPTIRLSrkaLEAAA--AekrkpdefycmkMLEATGVCVVAGSGFGQkegTLHFRTTFlAPGT 461
                    **********99998875522333..2447888899999****************98766688998877665 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   2.6e-05      0.23      74     182 ..     148     266 ..     139     270 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 2.6e-05
                      SSHHHHHHHHHHTTS-TTEEE.EEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCT......TEEEEEEESS-TTT...T----HH CS
  Cys_Met_Meta_PP  74 ssGmaAiaaailallkaGdei.vvsddlYggtqrllkkvlkklgievkfvdtsdleelekaike......ntklvylEtptnpl...lkvvDie 157
                      ssG+ ++ ++i a  ++G  i + +  lY  t +ll+  +    ++ +    +++e +++a ++       ++++ +  p+np+   l+  D++
       CCE29690.1 148 SSGVNTLLHVICADKNSGIMIpIPQYPLYTATLALLDAKAVPYYLDESQSWGTSFETIKAAYEKgkadgaDVRCIVIINPGNPTgasLSEKDVR 241
                      566666655666555666655355567888888888888888888877777788888888877655555678999999*****85557889*** PP

                      HHHHHHHHTT-EEEEEGTTTHTTTS CS
  Cys_Met_Meta_PP 158 kiaklakkagvlvvvDntfaspllq 182
                      +++++ak+++++++ D ++ + +++
       CCE29690.1 242 SVIDFAKQENLVIMADEVYQTNVFV 266
                      ******************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3470.41
//
Query:       CCE29691.1  [L=488]
Description: probable RPN7-subunit of the regulatory particle of the proteasome [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-55  186.8   1.8    2.6e-55  186.8   0.3    1.7  2  RPN7      26S proteasome subunit RPN7
    1.4e-15   57.7   0.0      4e-15   56.2   0.0    1.7  2  PCI       PCI domain
  ------ inclusion threshold ------
      0.049   14.0   0.1        0.1   13.0   0.1    1.5  1  SH3_15    Mind bomb SH3 repeat domain
      0.088   12.9   0.1       0.51   10.5   0.0    2.3  2  TPR_7     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.8   0.3   5.9e-59   2.6e-55       1     174 []     102     275 ..     102     275 .. 0.99
   2 ?   -1.6   0.1      0.43   1.9e+03      13      53 ..     369     409 ..     359     413 .. 0.76

  Alignments for each domain:
  == domain 1  score: 186.8 bits;  conditional E-value: 5.9e-59
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC--SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
        RPN7   1 DekwveelrkknekeleeLdaelkdakenlgkeeirrakldlaehYlkigdleeAlkaysrireyctslkhkidmllnlirvaiffndwdlvskyleka 99 
                 De+++e+l++ ne+el+ +++e ++a e+ g++e+ +ak ++ae ++++gd+++A++ y+ ++e++  l+ kid++l++ir+++ff+d+ lv+k++e++
  CCE29691.1 102 DEALYEKLKADNEEELAGFQKEEDEAVEKAGDTEVMAAKGKKAELWARVGDKDKAIAVYEDVFEKTGILGTKIDIVLAIIRMGLFFGDKVLVKKHIERV 200
                 899************************************************************************************************ PP

                 HCSSS---.HHHHHHHHHHHHHHHHHTT-HHHHHHHHCTS-GGGT.TTT--HHHHHHHHHHHHHHH--HHHHHHH CS
        RPN7 100 kellekggdwerknrlkvyeGlallairkfkeAaellldilstftskellsyedlavyavlcalatldRkdLkak 174
                 k+l+e+ggdw+r+nrlk+yeGl+ll++r ++ Aa llld+lstfts+el++y++l+vy+vl++ ++l+R+d+k+k
  CCE29691.1 201 KTLVESGGDWDRRNRLKAYEGLHLLTVRSYNLAAPLLLDSLSTFTSYELCTYSNLVVYSVLAGSVSLKRVDFKSK 275
                 ************************************************************************986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.43
                 HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCT-HH CS
        RPN7  13 ekeleeLdaelkdakenlgkeeirrakldlaehYlkigdle 53 
                 e++    d+ l ++k+  + e   ra+++l + Y  +g  +
  CCE29691.1 369 EENFLNQDRYLHEHKNWFIREMRLRAYQQLLQSYRVVGLES 409
                 55555557888899999999999999999999998888655 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.1   1.4e+04      75      89 ..      33      47 ..      17      49 .. 0.64
   2 !   56.2   0.0   8.9e-19     4e-15       6     100 ..     349     444 ..     345     450 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.1
                HHHHHHHHHHHHTTS CS
         PCI 75 devEkilvklIrdge 89
                + + kil ++I +++
  CCE29691.1 33 QAAVKILQDAIVEDK 47
                556677777776665 PP

  == domain 2  score: 56.2 bits;  conditional E-value: 8.9e-19
                 HHHHHHHTSHHHHHHHHHHHHHHHHH.HTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEETTTTE CS
         PCI   6 llkalrsgnlsgfseelkdleeella.ddglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakidqesgi 100
                 l+++l+sg++++f ++l+d+ee++l+ d++l+++ + + +++r+r+++q+ ++y+ + le++a+ ++++vd +++ l+++I+ g+i ++id+++g 
  CCE29691.1 349 LVSSLYSGDYKKFFQSLADVEENFLNqDRYLHEHKNWFIREMRLRAYQQLLQSYRVVGLESMANDFGVTVDFLDRDLARFIAAGRIPCTIDRVTGK 444
                 8899****************9998862568999***********************************************************9875 PP

>> SH3_15  Mind bomb SH3 repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.2e-05       0.1       4      30 ..     188     214 ..     185     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.2e-05
      SH3_15   4 GDwVrvkddvekvkklqeghggWsgam 30 
                 GD+V vk+++e+vk+l e  g+W  ++
  CCE29691.1 188 GDKVLVKKHIERVKTLVESGGDWDRRN 214
                 9**********************7765 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00011      0.51       6      27 ..     144     163 ..     143     168 .. 0.88
   2 ?   -3.6   0.0       3.7   1.7e+04      11      21 ..     472     482 ..     471     483 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
       TPR_7   6 arlysrlGdyeeAielyeqsLa 27 
                 a+l+ r+Gd ++Ai +ye   +
  CCE29691.1 144 AELWARVGDKDKAIAVYED--V 163
                 789**************97..5 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.7
       TPR_7  11 rlGdyeeAiel 21 
                 +l++y +A++l
  CCE29691.1 472 KLQKYGQAVRL 482
                 68899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.19s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3871.33
//
Query:       CCE29692.1  [L=536]
Description: related to RNA (guanine-N7-) methyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-69  233.3   0.0    4.3e-47  160.8   0.0    2.4  2  Pox_MCEL         mRNA capping enzyme
    7.6e-10   39.4   0.1    0.00015   22.4   0.0    2.6  2  Methyltransf_25  Methyltransferase domain
    4.2e-08   33.8   7.0    2.2e-07   31.5   0.0    3.7  2  Methyltransf_12  Methyltransferase domain
      5e-07   29.6   0.0    0.00021   21.1   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
    6.2e-07   30.0   0.0      0.046   14.4   0.0    2.6  2  Methyltransf_11  Methyltransferase domain
    9.8e-07   28.7   0.0    1.9e-06   27.8   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    1.8e-05   23.7   6.2    1.8e-05   23.7   6.2    2.0  2  Raftlin          Raftlin
  ------ inclusion threshold ------
      0.015   14.5   0.0      0.024   13.8   0.0    1.3  1  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family
      0.038   13.2   3.0      0.071   12.3   3.0    1.4  1  Zip              ZIP Zinc transporter
      0.048   12.6   0.0      0.082   11.8   0.0    1.4  1  Methyltransf_9   Protein of unknown function (DUF1698)
       0.13   12.5   0.0       0.35   11.1   0.0    1.8  1  BEN              BEN domain
       0.55   10.4   5.8      0.073   13.2   0.4    2.1  2  DDHD             DDHD domain
        1.8    7.3  11.1      0.059   12.2   2.4    2.0  2  Apt1             Golgi-body localisation protein domain
        2.6    6.5   9.5        4.6    5.7   9.5    1.3  1  DUF2151          Cell cycle and development regulator
        3.9    6.4   9.0        7.9    5.3   9.0    1.5  1  DUF913           Domain of Unknown Function (DUF913)
          9    4.9  21.4     0.0073   15.1   5.6    2.1  2  Presenilin       Presenilin


Domain annotation for each model (and alignments):
>> Pox_MCEL  mRNA capping enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.0   3.9e-50   4.3e-47       4     207 ..      96     334 ..      93     359 .. 0.82
   2 !   70.0   0.0   1.6e-22   1.8e-19     207     332 ..     417     535 ..     407     536 .] 0.90

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 3.9e-50
    Pox_MCEL   4 aetesevtdlvathynerpetgellkkRiastiiylrnlnNyiKslLiseyasktkl.........desnklkvLdldcgkGgDLeKyekg..eIsklv 91 
                 +++ ++v+d+v++hyn+ pe g+ +   ++s+i+ lr +nN+iKs +i+ y   +++          + ++l vLd++cgkGgDL+K++ +   I+ +v
  CCE29692.1  96 QSRMRGVHDVVRQHYNNVPERGR-QWRTTDSKIKGLRVFNNWIKSCIIQRYSPDEDHepgsrelgrSSGKELLVLDVGCGKGGDLNKWQLApqPIQLYV 193
                 6677899***************6.444579*********************9888765555445434568899****************98446***** PP

    Pox_MCEL  92 atDiaeesieeckeRY..............nklrsekkskyykFdaelirsdsfvssvrev..fed........yelkfdivslQFaiHYsFeseekar 166
                 + D+ae+si++++eRY               +  s+++     Fda +   d+f +s++ v  +++         +  fd+v + F++HY+Fesee+ar
  CCE29692.1 194 GLDPAEVSIDQAQERYrsiatraggggrggGRGGSNRRPPPRVFDAIFHVKDCFRESIESVdiIHQvgfdpspmNHRGFDVVTMMFSMHYAFESEENAR 292
                 ******************9999999998774455555555678**************986532444788889988899********************* PP

    Pox_MCEL 167 tvlrNvaellasGGkvlgTtpdgdelskltvkklkvi.ekdl 207
                 ++lrNva  l++GG+++g +p++d+ls+++++  + +  k++
  CCE29692.1 293 IMLRNVAGALKKGGRFIGCIPNSDVLSERVRQFNEKAaAKKA 334
                 **************************9999865544302222 PP

  == domain 2  score: 70.0 bits;  conditional E-value: 1.6e-22
    Pox_MCEL 207 lpsfgNsiyvvkfeeekiev....plfGakYeynledvvkdvpEyivkfealvklaeeYgleLvdkkdfaeiieesikke.lkklikrvskleerkstk 300
                 ++++gNsiy v+f  +++e+    p+fG kY++ l+++v++vpEy+v+ ea+++la++++leL  + +f+ei e + ++  l  l +r+          
  CCE29692.1 417 TAEWGNSIYRVRFPGKTPEDgvfrPPFGWKYNFFLDEAVEEVPEYVVPWEAFRALADDFNLELQFHRTFREIWEAEKDDPeLGPLSERMG--------- 506
                 689***********9999999999****************************************************77777889999998......... PP

    Pox_MCEL 301 nfeelnrsalkstlgkdeeealsyYlvfvfeK 332
                      +r  +   ++ de ea+s+Yl f f K
  CCE29692.1 507 ---VRERGGGPLLVSDDEMEAASFYLGFCFYK 535
                 ...33555666679****************99 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.4e-07   0.00015       1      43 [.     168     211 ..     168     218 .. 0.87
   2 !   14.4   0.0   4.1e-05     0.046      56      97 .]     263     306 ..     237     306 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.4e-07
                      EEEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraee 43 
                      vLd+GcG+G ++ +++ +  + + ++g+D++e  +++a+er+++
       CCE29692.1 168 VLDVGCGKGGDLNKWQLAPqPIQLYVGLDPAEVSIDQAQERYRS 211
                      9***********9987665358999****************964 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.1e-05
                      CGBSSSTTTEEEEEEESTGGG.SS.HHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  56 edlpfedgsfDlvvssgalhh.ls.dedlekalkeiarvLkpgG 97 
                      +  p +++ fD+v++++++h+ ++ +e+++ +l+++a +Lk+gG
       CCE29692.1 263 DPSPMNHRGFDVVTMMFSMHYaFEsEENARIMLRNVAGALKKGG 306
                      446788999***********987614566779***********9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0     2e-10   2.2e-07       1      99 []     169     308 ..     169     308 .. 0.95
   2 ?   -0.7   2.5       2.2   2.4e+03      31      64 ..     329     362 ..     322     386 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieyt.gvDispsaiedakeklakrennnnnnvelealdlldldgg............................. 64 
                      L++GcG G  l  +  + ++i+++ g+D+ + +i++a+e+ +++  +     +   +  +++ ++                             
       CCE29692.1 169 LDVGCGKGGDLNKWQLAPQPIQLYvGLDPAEVSIDQAQERYRSIATRAGGGGRGGGRGGSNRRPPprvfdaifhvkdcfresiesvdiihqvgf 262
                      8************999997887766********************999999999888888888879**************************** PP

  Methyltransf_12  65 .......ssfDlvvasnvlhhl....kdirevldnirklLkpgGrl 99 
                               fD+v++ + +h+     ++ r +l+n++ +Lk+gGr+
       CCE29692.1 263 dpspmnhRGFDVVTMMFSMHYAfeseENARIMLRNVAGALKKGGRF 308
                      ********************************************96 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.2
  Methyltransf_12  31 saiedakeklakrennnnnnvelealdlldldgg 64 
                      +a ++a++k +++e+++ ++ e ++++ ++++g+
       CCE29692.1 329 AAAKKAAKKEKDNEKKKEEQAEGKETEGEKEKGE 362
                      4456788888888888888888887777766665 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.9e-07   0.00021       3      48 ..     164     209 ..     162     213 .. 0.90
   2 !    6.2   0.0    0.0074       8.2      72     136 ..     269     339 ..     245     378 .. 0.60

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.9e-07
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkae.vvGiDiseeaielArena 48 
                      k+l vlD+GCG+G ++ ++  ++ + ++ +vG+D  e +i +A+e+ 
       CCE29692.1 164 KELLVLDVGCGKGGDLNKWQ-LAPQPIQlYVGLDPAEVSIDQAQERY 209
                      67789***************.88889999***************986 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0074
  Methyltransf_31  72 dekfDlilsn....evlnaladpdkileeiervlkpggilliedpr......llaelpakveeeskayevvegak 136
                       + fD+++       ++    +    l+++  +lk+gg+++ + p+            +++ e+  a++ +++ k
       CCE29692.1 269 HRGFDVVTMMfsmhYAFESEENARIMLRNVAGALKKGGRFIGCIPNsdvlseR----VRQFNEKAAAKKAAKKEK 339
                      4678887665322344466677778899*************999996644331....333333333222222222 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00011      0.13       1      40 [.     169     211 ..     169     217 .. 0.87
   2 !   14.4   0.0   4.1e-05     0.046      44      95 ..     253     309 ..     237     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
                      EEET-TTSHHHHHHH...HTT.SEEEEEES-HHHHHHHHHHCCH CS
  Methyltransf_11   1 LdvGcGtGrlaeala...krg.arvvgvDlskemlklakekase 40 
                      LdvGcG+G  +++++   +     +vg+D+++  +++a+e+++ 
       CCE29692.1 169 LDVGCGKGGDLNKWQlapQ-PiQLYVGLDPAEVSIDQAQERYRS 211
                      8*************96533.2699***************99875 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.1e-05
                      EEEETTEECCCT.SS-TT-EEEEEEES-CCC-....CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  44 kvefvvadaekl.pfednsfDlvvssevlhhv....edpekalkeiaRvLkpgGllv 95 
                      +v+++++   +  p++   fD+v++ +++h+     e+ +  l+++a  Lk+gG+++
       CCE29692.1 253 SVDIIHQVGFDPsPMNHRGFDVVTMMFSMHYAfeseENARIMLRNVAGALKKGGRFI 309
                      5666666666644899999********999999998899999************997 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.7e-09   1.9e-06      26     128 ..     168     321 ..     141     353 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.7e-09
  Methyltransf_23  26 vLdiGcGtGillevl..rengfsvt.gvDlspeaveiae...............................kakkaqkdqfdeqeaae....... 78 
                      vLd+GcG+G  l+    ++++ +++ g D+ ++ ++ a+                                a++ +kd+f+e+ +++       
       CCE29692.1 168 VLDVGCGKGGDLNKWqlAPQPIQLYvGLDPAEVSIDQAQeryrsiatraggggrgggrggsnrrppprvfDAIFHVKDCFRESIESVdiihqvg 261
                      9********98888756788887555******9999999*******************************999999999977755558888888 PP

  Methyltransf_23  79 ......pqgkfdlIvlrevlehvp....dppellrqiatllkpgGylllseplaslkedr 128
                            + + fd+++++++++       +    lr++a  lk gG+++ + p+++  ++r
       CCE29692.1 262 fdpspmNHRGFDVVTMMFSMHYAFeseeNARIMLRNVAGALKKGGRFIGCIPNSDVLSER 321
                      888888999******998776544222278899999999*************99884333 PP

>> Raftlin  Raftlin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.6      0.31   3.4e+02     211     267 ..      36      92 ..       3     147 .. 0.37
   2 !   23.7   6.2   1.6e-08   1.8e-05     116     253 ..     266     396 ..     256     429 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.31
     Raftlin 211 lsgksseagaeeeaeseegkkgegpaaeqlqlssaeeegsespskskkgeeelskte 267
                  ++++ + ++++ + ++++++++ + + ++ +s+ae+e+ +  + ++++++ +++++
  CCE29692.1  36 YNANQLQPAKRRAISPSDQPRKQKRPGTRARISEAEREAIRRRQLERERDQAAQNAA 92 
                 333333333333333333333333333333333333332222222222222111111 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 1.6e-08
     Raftlin 116 dlknegyvLeieecssldeladqkiikelikkvqeaasrGlkFvgvipqyasqsksansssltsgaaese.eardekkkrsssedkvslenekpgalsg 213
                 +++++g  +++ ++s+ +  + ++ ++ ++  v  a ++G +F+g+ip+ +  s+ +   +++ +a++++ +++d++kk++++ +  ++e ek ++ + 
  CCE29692.1 266 PMNHRGFDVVTMMFSMHYAFESEENARIMLRNVAGALKKGGRFIGCIPNSDVLSERVRQFNEKAAAKKAAkKEKDNEKKKEEQAEGKETEGEKEKGEKE 364
                 56666666777778888889999999***********************99887777766664333333313333333333333333333333333333 PP

     Raftlin 214 ksseagaeeeaeseegkkgegpaaeqlqlssaeeegsesp 253
                 +    ++e+e+++ee+k    +++eq +++++ +++ +++
  CCE29692.1 365 T----DKEKESQTEEEK----KNSEQGNEKTNGDATTTTT 396
                 3....333333333222....2222222222222222222 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.2e-05     0.024     157     197 ..     270     310 ..     242     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.2e-05
                     ..EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE CS
  NNMT_PNMT_TEMT 157 kkadvvvtifcleaacedleeylralrnlasllkpGGhlvl 197
                     + +dvv  +f++ +a e+ e+ +  lrn+a++lk+GG+++ 
      CCE29692.1 270 RGFDVVTMMFSMHYAFESEENARIMLRNVAGALKKGGRFIG 310
                     349************************************94 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.0   6.3e-05     0.071     111     171 ..     333     393 ..     238     428 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.3e-05
         Zip 111 pkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqas 171
                 +  ++++++e++++++++ +++e+++ek ++++ ++++ +++ee++n++q+ ++ +  ++ 
  CCE29692.1 333 KAAKKEKDNEKKKEEQAEGKETEGEKEKGEKETDKEKESQTEEEKKNSEQGNEKTNGDATT 393
                 2223333444555556666666666666666666666666666666666655555444433 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.3e-05     0.082     115     151 ..     164     202 ..      78     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.3e-05
                     TT-EEEEET-TTS..HHHHHHHHCT-SEEEEE---HHHH CS
  Methyltransf_9 115 kgrtildvGcgnG..yhlwrmvgegaklvvGidPselfl 151
                     k+  +ldvGcg+G     w+++ +  +l vG+dP+e+ +
      CCE29692.1 164 KELLVLDVGCGKGgdLNKWQLAPQPIQLYVGLDPAEVSI 202
                     56689*******944467****************98765 PP

>> BEN  BEN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00031      0.35      36      71 ..      93     128 ..      74     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
                 E--HHHHHHHHHHHHHHH--..........-HHHHH CS
         BEN  36 aLDpnklsaIrnyveerypsekededwwrecldqIn 71 
                 a ++ +++ ++++v+++y++++e++++wr+++++I+
  CCE29692.1  93 AVEQSRMRGVHDVVRQHYNNVPERGRQWRTTDSKIK 128
                 567889999*************************98 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.7       1.2   1.4e+03     143     143 ..      73      73 ..       4     162 .. 0.55
   2 ?   13.2   0.4   6.5e-05     0.073     119     170 ..     322     377 ..     264     470 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.2
        DDHD 143 s 143
                 +
  CCE29692.1  73 E 73 
                 1 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 6.5e-05
        DDHD 119 slelaeeesaslaessksherasesskasqeskaaesstasssaksskaee....k 170
                 + +++e+ +a++a++++++++++++++a+ ++++ e+++ +++++++k+++    k
  CCE29692.1 322 VRQFNEKAAAKKAAKKEKDNEKKKEEQAEGKETEGEKEKGEKETDKEKESQteeeK 377
                 33333333333333333333222222222222222222222222111111111111 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.6      0.21   2.3e+02     314     391 ..      27      97 ..       1     179 [. 0.52
   2 ?   12.2   2.4   5.3e-05     0.059     308     386 ..     330     410 ..     274     458 .. 0.57

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.21
        Apt1 314 seeddesdeesessssss.........ssssssassssssssrssslelrlkptsstssssssessssssskkrsseesslessase 391
                 + +dd                      + ++++a s s++ +++++   r    ++ s++++++ +++++ ++r++  +++  ++++
  CCE29692.1  27 DAQDD------------LpqpynanqlQPAKRRAISPSDQPRKQKRPGTR----ARISEAEREAIRRRQLERERDQAAQNAAAVEQS 97 
                 11111............011111111111111111112222222222222....555555556666666666555554444443333 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.3e-05
        Apt1 308 mvk.essseeddesdeesessssssssssssassssssssrssslelrlk.ptsstssssssessssssskkrsseessle 386
                  +k + ++e+d+e+++e+++++++++ ++++ +++++++++s+++e++++ ++++++++   +++++++  +++ e++ le
  CCE29692.1 330 AAKkAAKKEKDNEKKKEEQAEGKETEGEKEKGEKETDKEKESQTEEEKKNsEQGNEKTNGDATTTTTTTPPREEPEDEDLE 410
                 222222244444444444444444433333333333333333333333222223334444444444444444444444554 PP

>> DUF2151  Cell cycle and development regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   9.5    0.0041       4.6     553     620 ..     321     387 ..     277     424 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0041
     DUF2151 553 cllecrkkekeeedkkkvkrkfsdkedktekksakeeseksdeesseskkeeeaeresvkeaevdspe 620
                  ++++++k+  ++  kk k ++++ke+++e k+++ e+ek ++e+ ++k+++++e+++++e + ++++
  CCE29692.1 321 RVRQFNEKAAAKKAAKKEKDNEKKKEEQAEGKETEGEKEKGEKETDKEKESQTEEEKKNSE-QGNEKT 387
                 3444444444444333333334444443443333333333331111111111111111111.112222 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   9.0    0.0071       7.9     247     315 ..     320     387 ..     284     411 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0071
      DUF913 247 arvvelgkekaakllvedassasskseasssssssetkeeekssededvemedaeeetesesdeseese 315
                 +rv+++ ++ aak   ++++ +++k+e++++ +++e ++e k ++++d+e+e+++ee++++s++ +e++
  CCE29692.1 320 ERVRQFNEKAAAKKAAKKEKDNEKKKEEQAEGKETEGEKE-KGEKETDKEKESQTEEEKKNSEQGNEKT 387
                 5666666666644444442222222222222222221111.1122222222222222222222222222 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   7.8       4.8   5.4e+03     270     302 ..      37      86 ..       2     131 .. 0.33
   2 ?   15.1   5.6   6.5e-06    0.0073     231     305 ..     332     399 ..     313     507 .. 0.53

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 4.8
  Presenilin 270 e..................seeeseeesseaessaeesseekeseessess 302
                 +                  + ++++  +++  s+ae+++ ++++ e+++ +
  CCE29692.1  37 NanqlqpakrraispsdqpR-KQKRPGTRARISEAEREAIRRRQLERERDQ 86 
                 01111222222222211111.111111111111111111111111111111 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 6.5e-06
  Presenilin 231 evaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessesseee 305
                 ++a+++e+++++kk+e+a+ +++  e e+e+ e  +++++++e+++ee+++++++ +e+++ ++   +++++++ 
  CCE29692.1 332 KKAAKKEKDNEKKKEEQAEGKET--EGEKEKGE--KETDKEKESQTEEEKKNSEQGNEKTNGDA---TTTTTTTP 399
                 11111111111111111111111..11111111..11111111111111111111111111111...11111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2553  (0.142395); expected 358.6 (0.02)
Passed bias filter:                     1000  (0.0557756); expected 358.6 (0.02)
Passed Vit filter:                       336  (0.0187406); expected 17.9 (0.001)
Passed Fwd filter:                        94  (0.0052429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.16u 0.37s 00:00:01.52 Elapsed: 00:00:00.48
# Mc/sec: 3364.61
//
Query:       CCE29693.1  [L=627]
Description: probable vacuolar aspartic proteasse [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-35  119.9   0.0    7.7e-35  118.8   0.0    1.6  1  EF_assoc_2      EF hand associated
    3.9e-30  103.3   0.1      1e-29  101.9   0.1    1.8  1  EF_assoc_1      EF hand associated
    5.1e-22   78.2   0.0    8.7e-15   54.7   0.0    2.2  2  Ras             Ras family
    5.4e-14   52.4   0.0    5.2e-09   36.4   0.0    2.4  2  Roc             Ras of Complex, Roc, domain of DAPkinase
    1.7e-07   31.3   0.0    0.00093   19.3   0.0    3.0  2  MMR_HSR1        50S ribosome-binding GTPase
    2.3e-07   29.9   5.3     0.0064   16.0   0.7    2.9  2  EF-hand_1       EF hand
    2.9e-07   30.7   0.0      0.002   18.2   0.1    2.9  3  Dynamin_N       Dynamin family
    5.3e-07   30.0   0.4     0.0019   18.6   0.1    2.7  2  EF-hand_7       EF-hand domain pair
    1.2e-06   27.9   2.8     0.0098   15.8   0.1    2.7  2  EF-hand_6       EF-hand domain
    0.00012   21.8   0.1     0.0081   15.9   0.0    2.4  2  AAA_29          P-loop containing region of AAA domain
    0.00024   21.1   0.0        1.4    8.8   0.0    3.3  3  RsgA_GTPase     RsgA GTPase
    0.00034   20.9   0.0      0.067   13.5   0.0    2.5  2  AAA_22          AAA domain
    0.00037   20.9   0.1      0.068   13.5   0.0    2.8  3  AAA_16          AAA ATPase domain
    0.00049   19.7   0.0        1.3    8.5   0.1    3.2  2  GTP_EFTU        Elongation factor Tu GTP binding domain
     0.0018   18.6   0.0        1.8    8.8   0.0    2.6  2  AAA_28          AAA domain
     0.0054   16.2   7.3      0.076   12.5   2.7    2.8  2  EF-hand_5       EF hand
  ------ inclusion threshold ------
       0.02   15.4   0.0       0.97   10.0   0.0    2.4  2  ABC_tran        ABC transporter
      0.044   13.5   0.0        3.8    7.2   0.0    2.4  2  AAA_24          AAA domain
       0.05   13.5   0.0        1.2    9.0   0.0    2.4  2  Ploopntkinase3  P-loop Nucleotide Kinase3
      0.063   12.4   0.0        3.1    6.9   0.0    2.4  2  DUF815          Protein of unknown function (DUF815)
      0.068   12.3   0.0         11    5.0   0.0    2.3  2  MCM             MCM P-loop domain
      0.097   12.5   0.0       0.33   10.7   0.0    1.8  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
        0.1   11.8   0.0       0.58    9.4   0.0    2.0  2  Septin          Septin
       0.13   12.1   2.2        1.4    8.8   0.1    2.5  2  EF-hand_10      EF hand
       0.13   12.6   0.0         19    5.7   0.0    2.6  2  RNA_helicase    RNA helicase
       0.18   11.4   0.0        6.7    6.3   0.0    2.2  2  AAA_15          AAA ATPase domain


Domain annotation for each model (and alignments):
>> EF_assoc_2  EF hand associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8   0.0   1.1e-37   7.7e-35       1      87 []     220     306 ..     220     306 .. 0.99

  Alignments for each domain:
  == domain 1  score: 118.8 bits;  conditional E-value: 1.1e-37
  EF_assoc_2   1 kpLseeeledikevvskklpegveeegltlkGFlllnklfiekGrhettWtvLrkFgYddsLsLkeeflhPkldvpedssveLspkG 87 
                 kpL++e+l++ik ++sk++p++  e+g++++GFl+lnk+++ekGrhet+W++Lrk++Y+dsLsL+++flhPk+dvpe++s eLsp G
  CCE29693.1 220 KPLTSEDLDNIKMSISKAMPNTSMERGINQSGFLQLNKIYAEKGRHETIWIILRKYHYTDSLSLEDKFLHPKFDVPEYCSSELSPIG 306
                 79**********************************************************************************976 PP

>> EF_assoc_1  EF hand associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.1   1.5e-32     1e-29       1      74 [.     344     416 ..     344     417 .. 0.93

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 1.5e-32
  EF_assoc_1   1 WaeaefpsstvtneegavtlqGwLaqWsltTlldvkttleyLaYlGypssslseeettsAlkvtrprkldrkkk 74 
                 W +++fpsstv+ne+g++tlqGwLaqWs+tT+l++ktt+eyLaYlG++ ++++e   t+Alkvt++rk++r+ +
  CCE29693.1 344 WVDSSFPSSTVRNEAGYITLQGWLAQWSMTTFLEPKTTIEYLAYLGFEPHNVKE-GITAALKVTKSRKRRRRPG 416
                 99*********************************************9655455.688************9975 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   1.3e-17   8.7e-15       2     160 ..       6     167 ..       5     169 .. 0.84
   2 !   21.5   0.0   2.1e-07   0.00014       4     120 ..     427     542 ..     424     583 .. 0.79

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.3e-17
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrv 100
                 + + Gd+++GK+sl+ + vkd+F +++++ +  + ++       ++v+ +i DT    + ++  ++ +r++++i+lvy+  ++ s+e+v+ ++    r 
  CCE29693.1   6 ICVCGDESTGKSSLIASLVKDQFMTNKIQPVLPQITIPPSIGTPENVTTTIVDTSARPQDRTTLRKEIRKCNVIILVYA--DHYSYERVALFWMPYFRS 102
                 7799***********************9999455555555555899**********99999999999***********6..99*******777777777 PP

                 STTTSEEEEEEETTTGGG....G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 101 aeenvpivLvGnKvDlee....kravsteegeelakelg.lkfletSAktnenveeafeellrei 160
                    nvp+vL++nK+Dl+      + v++e    +a+  +    + tSA++++nv+e+f  + +++
  CCE29693.1 103 LGVNVPVVLCANKSDLAGqgstPQIVEEEMLPVMAEFREiDSCIRTSAREHKNVNELFFLCQKAV 167
                 7779************9967755666666666777777744689**************9887765 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 2.1e-07
                 EEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHH.HTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS CS
         Ras   4 lvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrely.yrdaegillvyditsresfenvkkwveeikrva 101
                 l+G  + GK+sll  f +  F+  y++Ti     ++++e+ g +    i+   G  e   l +   + +++ i   yd ++ +sf+++ ++ ++  +  
  CCE29693.1 427 LIGAAGAGKSSLLDAFLNRPFDGLYHPTIKPRRAVNSVELPGGKQVYLIFEELGELEPAILDNRTkLDSCDLICYAYDSSDPDSFSHIVDMRSKYPQLD 525
                 89****************************9**********877777899999999988887654145556666678888999****999998877765 PP

                 TTTSEEEEEEETTTGGGG- CS
         Ras 102 eenvpivLvGnKvDleekr 120
                 e  +p +  + K+D +++ 
  CCE29693.1 526 E--LPSIYAALKADKDKTT 542
                 5..7777777777776644 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   7.5e-12   5.2e-09       1     119 [.       5     117 ..       5     118 .. 0.83
   2 !   13.7   0.0     8e-05     0.055       4      33 ..     427     456 ..     425     472 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 7.5e-12
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE.GHHHHCHH.H CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd.srssenlk.e 97 
                 +++++Gd+++GK+sl+ ++v+d+f +++ + +  +++     +i +       ++v+  i Dt+   + r++ +  +r+ +++ilvy    s+e++   
  CCE29693.1   5 RICVCGDESTGKSSLIASLVKDQFMTNKIQPVLPQITIPP--SIGT------PENVTTTIVDTSARPQDRTTLRKEIRKCNVIILVYAdHYSYERVAlF 95 
                 689*********************9888777655553322..2322......3468899***************************9725577777538 PP

                 HHHHHHHHCSSS-EEEEEE-TT CS
         Roc  98 WlkelkkvagkspvilvgnkiD 119
                 W+  +++ + + pv+l++nk D
  CCE29693.1  96 WMPYFRSLGVNVPVVLCANKSD 117
                 ********************99 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 8e-05
                 EESSTTSSHHHHHHCHCT-CCC-EEETTTT CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsekekstig 33 
                 l+G +g+GK+sll+ f+++ f+  +++ti 
  CCE29693.1 427 LIGAAGAGKSSLLDAFLNRPFDGLYHPTIK 456
                 8***********************999986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.4e-06   0.00093       1      93 [.       5      90 ..       5     115 .. 0.66
   2 !    8.5   0.0    0.0029         2       3      22 ..     426     445 ..     424     536 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.4e-06
                EEEEEESTTSSHHHHHHHHHTS....TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHH CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltge....kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpl 93
                ++++ G   +GKS+Li +l+++    + i    p+ T+ +  g+ +  +   ++vDt    +   ++  l+k+++   ++++i+lv     + ++ +
  CCE29693.1  5 RICVCGDESTGKSSLIASLVKDqfmtNKIQPVLPQITIPPSIGTPE--NVTTTIVDTSARPQ---DRTTLRKEIR---KCNVIILVYA-D-H-YSYE 90
                689******************84442233344569********988..8899******9333...3334555444...6888888875.3.2.3333 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0029
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                  ++G   +GKS+L+ a +++
  CCE29693.1 426 YLIGAAGAGKSSLLDAFLNR 445
                 689*************9986 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3   1.7e-05     0.012       2      25 ..     190     213 ..     189     217 .. 0.91
   2 !   16.0   0.7   9.3e-06    0.0064       3      26 ..     311     334 ..     309     336 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkel 25 
                 lk++F + DkD+dG+++  E++++
  CCE29693.1 190 LKRVFFLCDKDQDGFLNDAEMRDF 213
                 799******************986 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 9.3e-06
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                  ++F +fDkD+dG ++ +E+ +l+
  CCE29693.1 311 VDLFLLFDKDNDGGLNDQELEALF 334
                 578*****************9887 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1     3e-06     0.002       1      31 [.       6      36 ..       6      75 .. 0.85
   2 ?   -1.0   0.0       2.2   1.5e+03      98     137 ..      49      84 ..      39      95 .. 0.72
   3 !    9.2   0.0    0.0018       1.2       3      23 ..     427     447 ..     425     555 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3e-06
                EEEEEBTTTTHHHHHHHHHTS--S---SSS- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnpt 31
                i+v+G+ S GKSS++ +L++++++ ++ +p+
  CCE29693.1  6 ICVCGDESTGKSSLIASLVKDQFMTNKIQPV 36
                89*********************99988876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.2
                 TTS-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEE CS
   Dynamin_N  98 llvkgltlvDlPGldsvnkrdqelvkeyikkadiilavts 137
                 + + + t+vD+    s   +d   +++ i+k+++i++v +
  CCE29693.1  49 PENVTTTIVDT----SARPQDRTTLRKEIRKCNVIILVYA 84 
                 55666777776....5556666888999999999988865 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0018
                 EEEBTTTTHHHHHHHHHTS-- CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedi 23 
                 ++G+  +GKSS+l+a l +++
  CCE29693.1 427 LIGAAGAGKSSLLDAFLNRPF 447
                 79***************9987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   2.7e-06    0.0019       3      46 ..     189     227 ..     188     251 .. 0.82
   2 !    8.6   0.0    0.0036       2.5       7      28 ..     313     334 ..     310     347 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.7e-06
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeel 46 
                 +lk++F + D+d+dg+l+ +e++++  +     + +++l++e l
  CCE29693.1 189 ALKRVFFLCDKDQDGFLNDAEMRDFQAR-----CFDKPLTSEDL 227
                 699********************99888.....55555555544 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0036
   EF-hand_7   7 aFkelDtdgdgyldkeellrll 28 
                  F ++D+d+dg l+ +el+ l+
  CCE29693.1 313 LFLLFDKDNDGGLNDQELEALF 334
                 6899**************9766 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.5   0.00037      0.26       2      25 ..     190     213 ..     189     216 .. 0.91
   2 !   15.8   0.1   1.4e-05    0.0098       2      27 ..     310     335 ..     309     343 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00037
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrka 25 
                 l+++F l Dkd dG+++ +E+r++
  CCE29693.1 190 LKRVFFLCDKDQDGFLNDAEMRDF 213
                 789**************9999986 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.4e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 + ++F lfDkd+dG ++ +El ++++
  CCE29693.1 310 FVDLFLLFDKDNDGGLNDQELEALFS 335
                 789******************99886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.11        72      26      39 ..       7      20 ..       2      25 .. 0.84
   2 !   15.9   0.0   1.2e-05    0.0081      25      42 ..     425     442 ..     416     444 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.11
      AAA_29 26 lltGpsGsGKSTll 39
                 + G+  +GKS+l+
  CCE29693.1  7 CVCGDESTGKSSLI 20
                578**********9 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.2e-05
      AAA_29  25 tlltGpsGsGKSTllDAi 42 
                 + l+G+ G+GKS+llDA+
  CCE29693.1 425 CYLIGAAGAGKSSLLDAF 442
                 579**************7 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.037        26     103     130 ..       7      33 ..       2      39 .. 0.81
   2 ?    3.4   0.0     0.092        63      46     101 ..     106     167 ..      62     171 .. 0.81
   3 !    8.8   0.0    0.0021       1.4     102     120 ..     425     443 ..     404     455 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.037
                  EEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpelelktgev 130
                  +++G    GKS+Li +l+ + +  t+++
   CCE29693.1   7 CVCGDESTGKSSLIASLVKD-QFMTNKI 33 
                  7899999**********998.5666665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.092
                  T-EEEEEEE-GGG--HHH.......HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSE CS
  RsgA_GTPase  46 giepvivlnKiDlleeee.......eleelkeelealgyevllvsaktkegleelkellkdkt 101
                  ++++v++ nK Dl+ + +       e+  +++e+++++ +++ +sa+++++++el  l+++ +
   CCE29693.1 106 NVPVVLCANKSDLAGQGStpqiveeEMLPVMAEFREID-SCIRTSAREHKNVNELFFLCQKAV 167
                  689999********998878777777777888888885.677888999999999988888765 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0021
                  EEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase 102 svlvGqSGvGKStLinall 120
                  + l+G  G+GKS+L++a+l
   CCE29693.1 425 CYLIGAAGAGKSSLLDAFL 443
                  579************9876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.052        36       8      29 ..       6      27 ..       5      82 .. 0.65
   2 !   13.5   0.0   9.7e-05     0.067       8      61 ..     425     480 ..     420     500 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.052
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                ++v+G   tGK+ l++ l++  
  CCE29693.1  6 ICVCGDESTGKSSLIASLVKDQ 27
                68*************9998765 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 9.7e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.erpevv.fvtlpsstsskdllrell 61 
                 ++++G +G+GK+ ll  +l++     ++ + ++++ v +v+lp+++    +++el 
  CCE29693.1 425 CYLIGAAGAGKSSLLDAFLNRPFDGLYHPTiKPRRAVnSVELPGGKQVYLIFEELG 480
                 799******************97777777785555556999999998888888775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.092        63      27      45 ..       6      24 ..       2      41 .. 0.85
   2 !   13.5   0.0   9.9e-05     0.068      25      47 ..     423     445 ..     398     464 .. 0.83
   3 ?   -1.9   0.0       5.6   3.9e+03      63      99 ..     555     592 ..     536     617 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.092
      AAA_16 27 vllsGesGvGKsslvrell 45
                + + G+  +GKssl+ +l 
  CCE29693.1  6 ICVCGDESTGKSSLIASLV 24
                5689***********8775 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 9.9e-05
      AAA_16  25 elvllsGesGvGKsslvrellra 47 
                  l++l+G++G GKssl++++l++
  CCE29693.1 423 VLCYLIGAAGAGKSSLLDAFLNR 445
                 6899***************9974 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 5.6
      AAA_16  63 l.esaipy..salaqalareellrqlldeaesaeleawre 99 
                 +  +++p+  s+ ++ + + el+ +l+++a++ +l++ ++
  CCE29693.1 555 ClNMNTPLhvSVTWNSI-A-ELFVALAEAATNPSLGYPKT 592
                 35667777656677777.5.78888888844444443333 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1     0.002       1.3       6      32 ..       6      32 ..       1     169 [. 0.46
   2 ?    1.8   0.0      0.21   1.4e+02       2      24 ..     421     443 ..     420     446 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.002
                EEEEESTTSSHHHHHHHHHHHTTSSCH CS
    GTP_EFTU  6 igiighvDhGKtTLtdrLlyktgaisk 32
                i+++g+  +GK++L+ +L+++  +++k
  CCE29693.1  6 ICVCGDESTGKSSLIASLVKDQFMTNK 32
                666666666666666666654443333 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.21
                 CEEEEEEEESTTSSHHHHHHHHH CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLl 24 
                 +++ + +ig   +GK++L+d+ l
  CCE29693.1 421 NVVLCYLIGAAGAGKSSLLDAFL 443
                 5677889*************977 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0026       1.8       1      22 [.       5      26 ..       5      39 .. 0.87
   2 !    7.0   0.0    0.0092       6.4       3      22 ..     426     445 ..     424     465 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0026
      AAA_28  1 kivitGgestGKTtlleaLaar 22
                +i++ G estGK++l++ L ++
  CCE29693.1  5 RICVCGDESTGKSSLIASLVKD 26
                79***************99765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0092
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                 +++G+ ++GK++ll a+ +r
  CCE29693.1 426 YLIGAAGAGKSSLLDAFLNR 445
                 89************998776 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2     0.025        17       9      23 ..     198     212 ..     190     214 .. 0.87
   2 !   12.5   2.7   0.00011     0.076       1      24 [.     310     333 ..     310     334 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.025
                 -SS-SSCE-HHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELkt 23 
                 D+++DG+++  E + 
  CCE29693.1 198 DKDQDGFLNDAEMRD 212
                 9*******9999876 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00011
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 ++d+F  +D+++DG ++ +EL++l
  CCE29693.1 310 FVDLFLLFDKDNDGGLNDQELEAL 333
                 5799*****************986 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.24   1.7e+02      14      36 ..       6      28 ..       3      83 .. 0.67
   2 ?   10.0   0.0    0.0014      0.97      15      32 ..     426     443 ..     421     454 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.24
                EEEEESTTSSHHHHHHHHTTSS- CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllk 36
                + + G+  +GKS+L++ l +   
  CCE29693.1  6 ICVCGDESTGKSSLIASLVKDQF 28
                567899999*******9988754 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0014
                 EEEESTTSSHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlklla 32 
                  ++G  GaGKS+Ll +++
  CCE29693.1 426 YLIGAAGAGKSSLLDAFL 443
                 69************9986 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0055       3.8       3      22 ..       4      23 ..       2      33 .. 0.84
   2 ?    3.6   0.0     0.068        47       6      26 ..     426     446 ..     422     449 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0055
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                ++i++ G++ +GK++l+++l
  CCE29693.1  4 VRICVCGDESTGKSSLIASL 23
                79***************998 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.068
      AAA_24   6 liyGpsgiGKTtlakelgpkp 26 
                  ++G +g+GK++l+  + ++p
  CCE29693.1 426 YLIGAAGAGKSSLLDAFLNRP 446
                 689**********99997766 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.3     2e+02       4      26 ..       4      26 ..       1      45 [. 0.77
   2 ?    9.0   0.0    0.0018       1.2       4      28 ..     423     448 ..     420     480 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.3
  Ploopntkinase3  4 rliylvGqPGaGkstlmaeltkg 26
                      i + G+  +Gks l+a+l k 
      CCE29693.1  4 VRICVCGDESTGKSSLIASLVKD 26
                    5578999************9863 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0018
  Ploopntkinase3   4 rliylvGqPGaGkstlm.aeltkgfd 28 
                      l yl+G+ GaGks l+ a l ++fd
      CCE29693.1 423 VLCYLIGAAGAGKSSLLdAFLNRPFD 448
                     589***********998344666666 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.08        55      57      76 ..       7      26 ..       2      40 .. 0.84
   2 ?    6.9   0.0    0.0046       3.1      58      76 ..     427     445 ..     408     449 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.08
      DUF815 57 LLwGarGtGKSslvkallne 76
                 + G+  tGKSsl+ +l+++
  CCE29693.1  7 CVCGDESTGKSSLIASLVKD 26
                678999********999875 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0046
      DUF815  58 LwGarGtGKSslvkallne 76 
                 L+Ga G+GKSsl+ a ln+
  CCE29693.1 427 LIGAAGAGKSSLLDAFLNR 445
                 79***********999875 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.016        11      57      78 ..       3      24 ..       1      34 [. 0.84
   2 ?    4.8   0.0     0.019        13      30      77 ..     393     442 ..     380     453 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.016
                S-EEEEEESSTSTHHHHHHHHH CS
         MCM 57 dinvllvgdpgtaKsqlLkyve 78
                 + ++++gd +t+Ks l+ ++ 
  CCE29693.1  3 TVRICVCGDESTGKSSLIASLV 24
                578**************98764 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHH---EBB.BSSSSB.BCSS-EEEEEESSTSTHHHHHHHH CS
         MCM  30 edvkkaillqlfggvkkk.ledktk.lrgdinvllvgdpgtaKsqlLkyv 77 
                 ++vk++i+ +l  + ++k ++   +  r  +   l+g  g +Ks lL + 
  CCE29693.1 393 HNVKEGITAALKVTKSRKrRRRPGRvERNVVLCYLIGAAGAGKSSLLDAF 442
                 689999987775444433033322313444444579***********875 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.8   2.6e+03       6      34 ..      10      32 ..       7      50 .. 0.70
   2 ?   10.7   0.0   0.00047      0.33       4      36 ..     427     457 ..     426     480 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.8
      AAA_21  6 GpNgsGKSnLLdaldllarldrdvegltd 34
                G+ ++GKS+L+  l       +d+++++ 
  CCE29693.1 10 GDESTGKSSLIASL------VKDQFMTNK 32
                55689*****9888......455555444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00047
      AAA_21   4 liGpNgsGKSnLLdaldllarldrdvegltdel 36 
                 liG+ g+GKS+LLda+  l r ++ + + t+++
  CCE29693.1 427 LIGAAGAGKSSLLDAF--LNRPFDGLYHPTIKP 457
                 8**************9..444455555555555 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00085      0.58       5      34 ..       4      33 ..       2      75 .. 0.86
   2 ?   -0.7   0.0      0.97   6.7e+02       9      27 ..     427     445 ..     421     465 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00085
                EEEEEEEBTTSSCCCCCCTTSSSS------ CS
      Septin  5 ftlmvvGesglGkttlintlfetdlieeek 34
                + + v+G++++Gk++li +l++++ ++++ 
  CCE29693.1  4 VRICVCGDESTGKSSLIASLVKDQFMTNKI 33
                5789******************99988854 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.97
                 EEEBTTSSCCCCCCTTSSS CS
      Septin   9 vvGesglGkttlintlfet 27 
                 ++G+ g Gk++l+++++++
  CCE29693.1 427 LIGAAGAGKSSLLDAFLNR 445
                 68***********999875 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1     0.002       1.4      26      46 ..     193     213 ..     190     216 .. 0.88
   2 ?    2.2   0.2      0.24   1.6e+02      26      45 ..     313     332 ..     309     335 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.002
  EF-hand_10  26 LFkkcDkSksgrLegeEieeF 46 
                 +F  cDk ++g+L++ E+  F
  CCE29693.1 193 VFFLCDKDQDGFLNDAEMRDF 213
                 6778**************999 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.24
  EF-hand_10  26 LFkkcDkSksgrLegeEiee 45 
                 LF   Dk ++g L+++E+e 
  CCE29693.1 313 LFLLFDKDNDGGLNDQELEA 332
                 77778************996 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.027        19       1      22 [.       6      27 ..       6      59 .. 0.85
   2 ?    4.2   0.0     0.082        57       1      19 [.     425     443 ..     425     460 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.027
  RNA_helicase  1 iwlyGpsgeGKStlakeLakal 22
                  i+++G++ +GKS+l+ +L+k+ 
    CCE29693.1  6 ICVCGDESTGKSSLIASLVKDQ 27
                  799**************99874 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.082
  RNA_helicase   1 iwlyGpsgeGKStlakeLa 19 
                   ++l G++g GKS+l + + 
    CCE29693.1 425 CYLIGAAGAGKSSLLDAFL 443
                   5899*********998865 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.12        81      27      44 ..       7      24 ..       4      93 .. 0.81
   2 ?    6.3   0.0    0.0097       6.7      26      55 ..     425     472 ..     418     574 .. 0.59

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.12
      AAA_15 27 vliGkNnsGKSsileald 44
                +++G  ++GKSs++  l 
  CCE29693.1  7 CVCGDESTGKSSLIASLV 24
                89************9983 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0097
      AAA_15  26 tvliGkNnsGKSsilealdlFlnnkekkn.......................k 55 
                   liG+ ++GKSs+l+a+   ln  ++++                       +
  CCE29693.1 425 CYLIGAAGAGKSSLLDAF---LN--RPFDglyhptikprravnsvelpggkqV 472
                 569************998...55..3444666666666666666666665551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 4446.05
//
Query:       CCE29694.1  [L=612]
Description: probable WD40 repeat protein CreC [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-13   51.4  10.3    0.00062   20.5   0.2    5.6  5  WD40         WD domain, G-beta repeat
    4.2e-09   36.6   0.0    0.00018   21.7   0.0    3.4  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.013   15.4   0.0        3.7    7.6   0.0    2.7  2  PD40         WD40-like Beta Propeller Repeat
      0.061   12.4   0.0      0.098   11.7   0.0    1.2  1  VID27        VID27 C-terminal WD40-like domain
       0.12   11.3   0.0       0.21   10.5   0.0    1.4  1  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
       0.14   12.1   0.0       0.38   10.6   0.0    1.7  1  eIF2A        Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0055        16      10      38 .]     295     324 ..     288     324 .. 0.79
   2 !   18.8   0.0   7.3e-07    0.0022      11      38 .]     383     410 ..     365     410 .. 0.82
   3 !   20.5   0.2   2.1e-07   0.00062      12      38 .]     426     452 ..     418     452 .. 0.89
   4 !    7.0   0.3     0.004        12       6      38 .]     461     499 ..     457     499 .. 0.65
   5 ?    0.1   0.1      0.57   1.7e+03      25      37 ..     593     605 ..     573     606 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0055
                 SSSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40  10 Hssvtslafspdgawl.asGsdDgtvriWd 38 
                 H++v+++ + p +  l +++++Dg++ ++d
  CCE29694.1 295 HTPVSHIEWIPGSENLfLAAHMDGSLVVYD 324
                 88899998777777752589********98 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 7.3e-07
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 + ++++afspd++ la +s+Dgt+r+ d
  CCE29694.1 383 QRINAFAFSPDNRHLAVASEDGTLRLID 410
                 349**********************965 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 2.1e-07
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 + t++++ pdg+++++G+ D  + iW+
  CCE29694.1 426 GLTCVRWTPDGKYVLTGGQDDLISIWS 452
                 48************************5 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.004
                 EEESS.SSEEEEE...EETTSSE.......EEEE..ETTSEEEEEE CS
        WD40   6 tltGH.ssvtsla...fspdgaw.......lasG..sdDgtvriWd 38 
                  + GH s+v+sla   +             +  G  ++Dg + +Wd
  CCE29694.1 461 RCQGHqSWVSSLAfdlW-----RcdertyrF--GsvGEDGRLCLWD 499
                 5789*888****75552.....033333543..42246*******9 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.57
                 EEEEETTSEEEEE CS
        WD40  25 lasGsdDgtvriW 37 
                 +++++++g+vr W
  CCE29694.1 593 IMTSCKNGHVRTW 605
                 567889*****88 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.056   1.7e+02      38      69 ..     295     327 ..     276     332 .. 0.83
   2 !   21.7   0.0     6e-08   0.00018      35      89 ..     379     432 ..     363     432 .. 0.89
   3 !   11.4   0.0    0.0001      0.31      42      89 ..     428     474 ..     424     476 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.056
  ANAPC4_WD40  38 dsevrsLaWkp.dgklLavaysdgevrlldaes 69 
                     v++++W p +++l+  a+ dg++ ++d e+
   CCE29694.1 295 HTPVSHIEWIPgSENLFLAAHMDGSLVVYDKEK 327
                  578999***8746889999**********9987 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 6e-08
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++++++++++a++pd++ Lava +dg++rl+d  +++++  +        tc+ W
   CCE29694.1 379 KTSNQRINAFAFSPDNRHLAVASEDGTLRLIDYLEEELLDLFYSYYG-GLTCVRW 432
                  568899**********************************9999888.5999999 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.0001
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++++W pdgk    + +d  +++ +a +  +v  ++ +++  v++l +
   CCE29694.1 428 TCVRWTPDGKYVLTGGQDDLISIWSAADSALVARCQGHQS-WVSSLAF 474
                  789********************************99988.5888776 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0012       3.7       7      28 ..     381     402 ..     377     408 .. 0.82
   2 ?    4.8   0.0    0.0095        28      12      22 ..     428     438 ..     425     440 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0012
                 SSS.EEEEEE-TTSSEEEEEEE CS
        PD40   7 tpgnegaPsfSPDGkrlaFsSd 28 
                 +++ + a++fSPD + la +S+
  CCE29694.1 381 SNQRINAFAFSPDNRHLAVASE 402
                 5566899***********9997 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0095
                 EEEEE-TTSSE CS
        PD40  12 gaPsfSPDGkr 22 
                 ++ +++PDGk+
  CCE29694.1 428 TCVRWTPDGKY 438
                 5779******8 PP

>> VID27  VID27 C-terminal WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.3e-05     0.098     150     217 ..     385     453 ..     359     476 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.3e-05
       VID27 150 fsava.ttekGyiavasekGdirlfdrlginaktalPalgdpiigldvsadGrwvlatcktyllLiDal 217
                 + a a + ++ ++avase G +rl d l  +    + +    ++ +  + dG++vl+  ++ l+ i + 
  CCE29694.1 385 INAFAfSPDNRHLAVASEDGTLRLIDYLEEELLDLFYSYYGGLTCVRWTPDGKYVLTGGQDDLISIWSA 453
                 444442457889*********************************************999999877555 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     7e-05      0.21     167     213 ..     360     408 ..     325     416 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7e-05
    Ge1_WD40 167 ygsgelsveeieegllkieehs..liveaafspdGtalatasedGevkf 213
                 + s++++++++++  +   ++s   i   afspd   la+asedG++++
  CCE29694.1 360 HISKSVHSQNQKTNPVAAWKTSnqRINAFAFSPDNRHLAVASEDGTLRL 408
                 55556666555555555544443479999****************9986 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.38      40     134 ..     364     455 ..     325     474 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
                 EEEESSSTT--EEECCEESSS.EEEEEE-TTSS-EEEEESSSSC.EEEEEECSCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTT CS
       eIF2A  40 elyliklkkkksevvelkkegpihdvaWspkskefaviyGkmpa.kvslfdlkvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkk 134
                 +++  + k +++   + +++  i ++a sp+++++av   +     ++  + ++  ++        ++ + p gk+vl++G  +l   ++iw   +
  CCE29694.1 364 SVHSQNQKTNPVAAWKTSNQ-RINAFAFSPDNRHLAVASEDGTLrLIDYLEEELLDLFYSYYGGLTCVRWTPDGKYVLTGGQDDL---ISIWSAAD 455
                 44444445555555555444.3666666666666666544333213333344444444444455556666666666666666666...66665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4483.07
//
Query:       CCE29695.1  [L=62]
Description: uncharacterized protein CPUR_03542 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 491.46
//
Query:       CCE29696.1  [L=577]
Description: probable ROD1-O-dinitrobenzene,calcium and zinc resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-15   57.0   0.0    8.5e-15   55.4   0.0    1.8  2  Arrestin_C  Arrestin (or S-antigen), C-terminal domain
    2.8e-11   43.7   0.0    5.1e-11   42.8   0.0    1.4  1  Arrestin_N  Arrestin (or S-antigen), N-terminal domain
     0.0033   17.1   0.0      0.007   16.1   0.0    1.5  1  LDB19       Arrestin_N terminal like


Domain annotation for each model (and alignments):
>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.7   4.2e+03      34     113 ..      53     143 ..      45     154 .. 0.47
   2 !   55.4   0.0   1.4e-18   8.5e-15       1     134 []     180     332 ..     180     332 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.7
                 SEEEEEEEEEEEEEEEESS.....SEEEEEEEEEE.EEE---........B-TTEE.EEEEEEE.----B-----S---EEEEEEEEEEEEE CS
  Arrestin_C  34 kkvkkikvslvqhvdvcafnr...snkkeknvvak.sdsvkv........tsaakdkletevelqiPeeltpssarnvelikvsYklkvklt 113
                 ++++ i ++lv +++  +  +    +k +k +v   +  +++           + +++e  +e  +P ++++s +      ++ Y+lk +++
  CCE29696.1  53 LRIEDIHLRLVGTLRLSSTAPtvsGQKVDKATVILdHRWKPFvgvqhgksMTLPAGNYEYPFEYMLPGDTAESVE-GIPEASITYRLKATVS 143
                 566667777776666666655444222222222221333333444444332223333443333344544444443.4444456666666665 PP

  == domain 2  score: 55.4 bits;  conditional E-value: 1.4e-18
                 ----EEEEEEES-SEEETT--EEEEEEEE.E-SSSEEEEEEEEEEEEEEEESS.......SEEEEEEEEEE.EEE---........B-TTEE.EEEEEE CS
  Arrestin_C   1 wdgkvsleaslpkkgyvpGetipvtvkid.ndskkkvkkikvslvqhvdvcafnr.....snkkeknvvak.sdsvkv........tsaakdkleteve 84 
                 w++kv++++ +p+k++v+G  i++++ ++  ++++++  i++++++  d + ++      ++ ++++ va+  + ++         +   ++ +++   
  CCE29696.1 180 WPNKVDYSIIIPQKAVVFGGIINMQMRFTpLLKGLELGDITAKMIEIRDCWIQGAtglsmREYRTEREVATwRFEANReehwqdmiEDTGQEGWTLVKP 278
                 99***************************77**********************99*****999999999998888888999999999999999****** PP

                 E.----B--.---S---EEEEEEEEEEEEEEE...SSEEEEEEEEEEEEEB--- CS
  Arrestin_C  85 lqiPeeltp.ssarnvelikvsYklkvkltls...gsggelslelPivlgsvpl 134
                 l +P+ l +   + n+ +ikv++k+k+++ l+   g+ +el+++lP+ ++++p+
  CCE29696.1 279 LPLPKRLRQcIQDLNHHGIKVRHKIKLTVALKnpdGHISELRATLPVSIFISPN 332
                 ****8888884446******************9975888************995 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   8.5e-15   5.1e-11      13     142 ..      36     162 ..      18     165 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 8.5e-15
                 ETT--EEEEEEE-CCCCTT.CEEEEEEEEEEEESSSSTTTTCCCEEEEEEEEEEEEESTSSSSS.SSSSHHHHHHHH-TTEEEEEE---TTS--SECSG CS
  Arrestin_N  13 hpgetvdGkvlleteelkkarkvkielsgkartgweesevagktfrkdltlkkkqeyleteksllkskkdsqekLpkGehafpFsfelPknlpsSfeGk 111
                 ++g+ ++G+v+l   ++++++ + ++l g+ r + +  +v+g++  k + + ++       k+ ++ +++ + +Lp+G++++pF + lP + + S+eG 
  CCE29696.1  36 SSGQLLKGVVVLCLSSPLRIEDIHLRLVGTLRLSSTAPTVSGQKVDKATVILDH-----RWKPFVGVQHGKSMTLPAGNYEYPFEYMLPGDTAESVEGI 129
                 356*********************************888877777666666654.....445666777888899************************6 PP

                 .EEEEEEEEEEEEECCC.E--C.CCEEEEEEEE CS
  Arrestin_N 112 .aggvrYevkvtldrpw.kidkkkkkvftVirk 142
                    +++Y +k+t+ r + ++d ++ k + +ir+
  CCE29696.1 130 pEASITYRLKATVSRGKlAYDLHAYKHLRIIRT 162
                 269***********9887666666666666665 PP

>> LDB19  Arrestin_N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-06     0.007      45      88 ..     103     144 ..      97     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-06
       LDB19  45 kdlkvGsysyPfsylipGslpassslgsnaetkvkyeliavvvy 88 
                   l +G+y+yPf y++pG+   s++     e+ + y l a+v  
  CCE29696.1 103 MTLPAGNYEYPFEYMLPGDTAESVE--GIPEASITYRLKATVSR 144
                 56899**************999988..678999********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4371.34
//
Query:       CCE29697.1  [L=479]
Description: uncharacterized protein CPUR_03544 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00019   21.4   0.5    0.00039   20.3   0.5    1.5  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
  ------ inclusion threshold ------
      0.025   15.1   0.0      0.046   14.2   0.0    1.5  1  PH              PH domain


Domain annotation for each model (and alignments):
>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.5   4.4e-08   0.00039      49     161 ..      50     170 ..      17     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.4e-08
                     HHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHH.......HHHHHHHHCHHHHHHHHHHHHHHHH CS
  Apolipoprotein  49 vrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerh.......vealkarlapyveelrqklaerlee 136
                     +   le+y+++v++  g +++e+ + l+++++ lre   +  ++    +a   e++r+ +++         ++lk  + p++e+l+++++++++e
      CCE29697.1  50 ACGYLEEYISAVEKVHGRQAKEYEKVLKTISNPLREG--HHFDQSLGGVAGFFENMRTNTQSQintnietEKSLKGSVLPILERLHKEIKHKAKE 142
                     55569*******************************4..4577777777777777555555555555665599********************** PP

                     HHH-----..---...--SSSHHHHHHH CS
  Apolipoprotein 137 lkeslaphaeeve...erlssrveelre 161
                     l++ ++  a+eve   +  ++++e l +
      CCE29697.1 143 LQSGAQSGAKEVEklrNITQKQIELLGQ 170
                     *******999999443333344444444 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.1e-06     0.046       2     104 ..     306     412 ..     305     413 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.1e-06
                 EEEEEEEEETSSSSC.SEEEEEEEEETTE.EEEESST.TCTTESSEEEEEESTTEEEEEEECTT.SSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHH CS
          PH   2 vkeGwLlkkgsgkkk.swkkrwfvLkdse.llyyknd.ksekdkepkgsislsncevvevvate.dpkrkfcfelriverngsrtyllqasseeerkeW 96 
                  +eG L +k+ +k + ++   ++v++ s+ l  +k++ +  ++ +p  s+ l ++++  +  ++ + k k +     ++ +gs+++ ++a ++ ++++W
  CCE29697.1 306 LIEGSLERKSRNKLSwGYSTGYYVVTPSKwLHEFKDSdDLRQNPKPELSMYLPDAVIGAPSGDKfNVKGKDKSGTMSSKLTGSTELAFKAHTPADAQKW 404
                 589*******99997888899999999999*******999999999***********98877334555555555555556778**************** PP

                 HHHHHHHH CS
          PH  97 ikaiqsai 104
                    iq+a+
  CCE29697.1 405 FLVIQKAC 412
                 *****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       981  (0.0547158); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3500.48
//
Query:       CCE29698.1  [L=396]
Description: related to formamidopyrimidine-DNA glycosylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-35  121.8   0.0    4.2e-35  120.9   0.0    1.5  1  Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-termina
    7.7e-22   77.1   0.0    1.4e-21   76.2   0.0    1.4  1  H2TH            Formamidopyrimidine-DNA glycosylase H2TH doma
     0.0039   16.0   0.0     0.0062   15.3   0.0    1.4  1  FbpA            Fibronectin-binding protein A N-terminus (Fbp


Domain annotation for each model (and alignments):
>> Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0   7.1e-39   4.2e-35       1     116 []       1     138 [.       1     138 [. 0.96

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 7.1e-39
                     X--HHHHHHHHHHHHHHHTT-EEEEEEE-SSHHHTS....THHHHHTT-.SEEEEEEEEETTEEEEEE..EEEEEEE-TTTEEESS......... CS
  Fapy_DNA_glyco   1 MPElpEVetvrrglrrhllgkkiakvevlkdktlrg....spaafakalkgrkiasvgrrGKyllleldggevlvvhlgmtGrllik........ 83 
                     MPE++EV++++++lr hl+gkki+ +++ +d++++g    s+aa+++alk++++ s+g++GKy++++ld++++lv+h+gmtG+++i+        
      CCE29698.1   1 MPEIAEVARIVHFLRLHLVGKKIQTASAIDDANVFGkvgtSGAAVEAALKEKRVLSAGSQGKYFWITLDKPPHLVMHFGMTGWVHIRgaktaytn 95 
                     ***************************************999********************************************888888888 PP

                     ...............TTEEEEEEEG..GGEEEEEEETT---EE CS
  Fapy_DNA_glyco  84 ........eaeeeppkhtkvrleld..dgtelaFvDpRrfGrv 116
                             + +++ppk++k+ +++d  + +e+aF+D+RrfGrv
      CCE29698.1  96 yykklkdkDGAQWPPKFWKFHFTTDddPAVEVAFTDARRFGRV 138
                     88889888999*************98899************97 PP

>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   2.4e-25   1.4e-21       2      84 ..     158     242 ..     157     250 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 2.4e-25
                 --BTT..STTS-HHHHHHHHHT--SBHHHHHHCTTTSCS--HHHHHHHHHHTT--TTSBGGGS-HHHHHHHHHHHHHHHHHHHHT CS
        H2TH   2 gpepl..seaftvdalaerlkkkkrkiktlLLDqklvaGlGNiyadEvLfrakihPerlakslskeelellhqeikevlkeaiel 84 
                 gp+p+  +++ft d+l+ +++ ++ +ik+lLLDq++++G+GN+ adE L++a++hPe+ + + s+ e+++l+++i+ v + a++ 
  CCE29698.1 158 GPDPVidTDRFTEDYLRGKMTARHVPIKALLLDQTTISGIGNWVADETLYQARLHPEQYSDTFSDVEIQRLYEAIRYVCQVAVDK 242
                 8999876889************************************************************************984 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     1e-06    0.0062     186     322 ..     181     364 ..     152     383 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1e-06
                 .XXXHHHHH..HHBTTXXHHHHHHHHTTXSSSH...............HHHHHHHHTXXX....................................... CS
        FbpA 186 ekdlvkaLv..kafqGlspllaeelleragldketsakelseedlerlyealqelleele....................................... 243
                   +++  L+  ++++G+++ +a e l++a l +e+  +++s+ +++rlyea++ +++                                          
  CCE29698.1 181 HVPIKALLLdqTTISGIGNWVADETLYQARLHPEQYSDTFSDVEIQRLYEAIRYVCQVAVdklgdsdefpshwlfnyrwgkgdkgaanklpngekisfi 279
                 566666665336789**************************************9998655666666666666666666666666666666666666666 PP

                 .........XXEE.....XSSSEESSX..XTTXX.SSXXXXSXHHHHHHHHTTTXXX--SHHHHHHHHHHH....HHHHHHHHHHHHHHH CS
        FbpA 244 .....eekfepqlvlkeekpeefsvvp..lkslselekesfdslsealdeyYakkaerdrveqkrsdlekr....veneleklekklkkl 322
                      +  f p +     ++++ +vvp   ++  + ++ +  + ++a d+  + k +++ ++++r + +k+    ++  l+k  ++ k +
  CCE29698.1 280 tvggrTSCFAPGV-----QKKAGQVVPvkAEHEGSEKEGEEGEEEAAADDTVGVKKKSTTAKRRRTQSKKVdapdLNGSLAKKTRTSKVQ 364
                 5555444455544.....344444444322222222233344445556666666666666666666666666666555555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2988.74
//
Query:       CCE29699.1  [L=206]
Description: probable vivid PAS protein VVD [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-13   49.8   0.0    5.1e-13   49.2   0.0    1.2  1  PAS_9     PAS domain
     0.0019   18.2   0.0     0.0078   16.2   0.0    2.0  2  PAS       PAS fold
  ------ inclusion threshold ------
       0.12   12.6   0.0       0.22   11.7   0.0    1.4  1  TPR_5     Tetratrico peptide repeat


Domain annotation for each model (and alignments):
>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   8.6e-17   5.1e-13       8     100 ..      95     203 ..      85     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 8.6e-17
       PAS_9   8 npdgrilyaNeaalrllGyspeevlgksitdlf..................vtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkdd 88 
                  p+ +i+y  +a+++l Gys+ evlg++++ l+                   ++++  +r+r+a+++++  e + +++++rknge f + ++++p+  d
  CCE29699.1  95 KPNEPIVYTTDAFCDLSGYSKSEVLGRNCRFLQsnptdsgaerdskpvapkPSSDSPSKRMRQAIDSKQ--EIQTTITNYRKNGESFKNCVSIIPLTLD 191
                 47889*********************************************99999999***********..*****************99******777 PP

       PAS_9  89 dgelvgiivilr 100
                 d + + ++++++
  CCE29699.1 192 DSGHQYAVGFCV 203
                 555555666665 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.9   1.2e+04      51      75 ..      21      45 ..      17      46 .. 0.67
   2 !   16.2   0.0   1.3e-06    0.0078      23      56 ..     100     133 ..      95     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.9
                STTHHHHHHHHHHHHHHHTT-ECCC CS
         PAS 51 heeddaelaelleqlleqgeesrag 75
                +++d+   ++  ++ + +++++ra+
  CCE29699.1 21 FPDDHLSAVDVKQTTAPSKSRWRAM 45
                6677777777777777777777765 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.3e-06
                 EEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH CS
         PAS  23 ilyvNaaaeellGlsreevlgkslldliheedda 56 
                 i+y+ +a+++l G+s +evlg++   l ++++d+
  CCE29699.1 100 IVYTTDAFCDLSGYSKSEVLGRNCRFLQSNPTDS 133
                 9*********************988887777776 PP

>> TPR_5  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.8e-05      0.22      59     103 ..      64     109 ..      59     118 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.8e-05
       TPR_5  59 aLLraeleapsdeld.dalaaflaLvLsdlgrereavsivllalae 103
                 a+L  ++++p+ +l+ +a+ + +aL L dl++++e +  + +a+ +
  CCE29699.1  64 AILLRLMARPNPQLQlGAVDCSVALLLCDLEKPNEPIVYTTDAFCD 109
                 56777888888777658*******************9998888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1578.33
//
Query:       CCE29700.1  [L=388]
Description: related to DNA repair protein MMS21 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-20   72.2   0.3    5.5e-20   70.9   0.3    1.7  1  zf-Nse          Zinc-finger of the MIZ type in Nse subunit
      0.006   16.6   0.4      0.012   15.6   0.4    1.5  1  zf-RING_UBOX    RING-type zinc-finger
  ------ inclusion threshold ------
      0.016   15.0   0.3      0.033   14.0   0.3    1.5  1  zf-MIZ          MIZ/SP-RING zinc finger
      0.021   14.7   0.1      0.044   13.6   0.1    1.5  1  zf-C3HC4_2      Zinc finger, C3HC4 type (RING finger)
      0.049   14.3   0.4       0.12   13.0   0.2    1.7  1  Nitr_red_assoc  Conserved nitrate reductase-associated protei


Domain annotation for each model (and alignments):
>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.3   1.5e-23   5.5e-20       1      57 []     275     331 ..     275     331 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 1.5e-23
                 SXXXXXSSBXXSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-S CS
      zf-Nse   1 delaieeerislkCPltlqpfeePvtskkCpHvFEreaIlelikrkktvkCPvagCs 57 
                 de+ai +e +sl+CPltl++++eP+t  +C+H+FE++aIle++  + +v+CP++gC+
  CCE29700.1 275 DEIAIAREVVSLNCPLTLRQLVEPYTHVECQHTFEKSAILEYLPVRGSVNCPQTGCN 331
                 9*******************************************************7 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4   3.4e-06     0.012       1      39 []     288     326 ..     288     326 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.4e-06
  zf-RING_UBOX   1 CpIClelftdP.lvlpCGHtFCreClwelskslegafkCP 39 
                   Cp  l ++ +P + ++C+HtF ++ +  +    +g++ CP
    CCE29700.1 288 CPLTLRQLVEPyTHVECQHTFEKSAI-LEYLPVRGSVNCP 326
                   9****99999*42258**********.6677788888888 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   9.1e-06     0.033       1      45 [.     284     326 ..     284     332 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.1e-06
                 EESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-T CS
      zf-MIZ   1 vslkCplslsrikiPvrgekCkHlqCfdlesylelnertetWnCP 45 
                 vsl+Cpl+l+++  P   ++C+H   f+ ++ le+   + + nCP
  CCE29700.1 284 VSLNCPLTLRQLVEPYTHVECQHT--FEKSAILEYLPVRGSVNCP 326
                 79*********************7..6766666666666666665 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.2e-05     0.044       2      39 ..     288     327 ..     287     328 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn..eCPl 39 
                 Cp+ l  l +p +  +C+H+f ++ il++L      +CP+
  CCE29700.1 288 CPLTLRQLVEPYTHVECQHTFEKSAILEYLPVRGsvNCPQ 327
                 999999*****9999*************996554479996 PP

>> Nitr_red_assoc  Conserved nitrate reductase-associated protein (Nitr_red_assoc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   3.3e-05      0.12      71     124 ..     156     209 ..     138     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.3e-05
  Nitr_red_assoc  71 kageeakeleieeepaWldeeevpeavqekaeelgveltleqwaeLtplqRfaL 124
                     +++++a +++ ++e++ ++e  +p a ++ a + +++ + +++++Ltp qR+aL
      CCE29700.1 156 AHADAADSISAADENQEQKEPPIPVASTKDAYQSALAKKKAEYEALTPHQRYAL 209
                     44567888999999999999*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1193  (0.0665402); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2743.00
//
Query:       CCE29701.1  [L=671]
Description: related to carboxypeptidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-72  243.8   0.0    7.5e-72  243.0   0.0    1.3  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.0   0.0   4.2e-76   7.5e-72       7     417 ..      58     532 ..      51     534 .. 0.86

  Alignments for each domain:
  == domain 1  score: 243.0 bits;  conditional E-value: 4.2e-76
                    -SSEEEEEEEECSTTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEE..TTTTSEEEE-TT-GGGCSEEEEE--STTSTT- CS
  Peptidase_S10   7 vnfkqysGYldveeeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvn..kdstkkleenpysWnkvanvlfldqPvGvGFS 100
                     n kqy+G++++  +  ++lF+wfve+++  ++d+l++WLnGGPG+sS+ G++  +GP++v     +++    +++ W++++n+lf+dqP  vGFS
     CCE29701.1  58 SNQKQYTGWVSIPGAYATNLFFWFVEARQ--RTDELTVWLNGGPGSSSMFGFFAGNGPCEVIerGINQYGTAAREWGWDRASNMLFIDQPNQVGFS 151
                    578*************************9..5699*************************99332345678899********************** PP

                    EETTSSG..S--SH...................................HHHHHHHHHHHHHHHHHSTCGTTS.....EEEEEEETTHHHHHHHHH CS
  Peptidase_S10 101 ysntksd..vktdd...................................eevaedlyefLkkffekfpeyksr.....dfyitGESYaGhyvPala 154
                    y++ ++   + t+d                                   +++a +++++++ f+++fp+y++       +++ +ESY+G+y P +a
     CCE29701.1 152 YDKPTNRtiILTSDnvnqpplqgsgslpawayangtfstmnatstanttDTAALAVWHLIQGFLTTFPQYQNAsnssvAVHLFSESYGGRYGPLFA 247
                    **999997755666799*******************************99999*****************6543333389**************** PP

                    HHHHTHCCH--S........STSEEEEEEEESE-SBHHHHHCCHHH....HHHHTTSSHHHHHHHHHHHHEETHHHHHHHHHHHHHHHHHHHHH.. CS
  Peptidase_S10 155 keilkknkkekk........kkinLkGlligNglideaeqvnsyve....fayehgliseeeyeslkkacekkeeleqesekcanllekaskva.. 236
                    ++   +n k+++          + L +l i Ng++d++ qv++y+     ++y+ +++ +e  + ++ + ++ e ++ + ++c ++  +++     
     CCE29701.1 248 ERWERQNRKRSTgqlranstVDVHLASLGIVNGCVDQELQVPYYPIfannNTYGYKALADEAAKFYTAKYNSPEGCKAKVQRCVAAALALDPRGeg 343
                    *******999889999999999*********************99866667778888888888888888888889998888888887777654466 PP

                    ......HHHHCHCEETTETTSEETTSSEEHHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT--TTSSS--SB-HHH...HHHCTCCC-SBCHHH CS
  Peptidase_S10 237 ......vekenkglnvynileeccklkaelkksstdaqggedpydesyvekylnkkeVrkalhvnasvkkweecndsv...feqleddisksveei 323
                          ++ + ++   y i e+++++    +++ + a + +dp       +yln++++ + ++   s ++++  ++ v   f+ ++d+++   ++ 
     CCE29701.1 344 gnadvnAMCAAANDACYAIQEPYYNS---GRSPYDLAAPYHDPNPALRFLSYLNQEHILRDIG---SPINYTLASSVVsqvFHDTGDQSRGGNIKR 433
                    66655433233355567777777553...46666778899999999999*************9...4599999999888779999999999***** PP

                    HHHHHHTT-EEEEEEETT-STT-HHHHHHHHHH....TECTTECCSCCCEEEE.TTTCESEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHH CS
  Peptidase_S10 324 leellesglrvliynGdvDlicnvlgteawikk....lelsgkkefrpwevsp.kkengqvaGyvkeyenltfltvkgaGHmvPedkpeealqlle 414
                    l ++l++g+r+ + +Gd D+icn+ g ea++ +         +++f+++ + p   +++ v+G v++y+nl+f ++++aGH v+ ++pe a+q++ 
     CCE29701.1 434 LAHILSQGVRIGLVYGDRDYICNWYGGEAVSLAianlTSPDYATKFSAAGYAPiLVNDTYVGGLVRQYGNLSFSRIYQAGHSVAWYQPETAFQVFA 529
                    ******************************999754334456778888888777778888999********************************9 PP

                    HHH CS
  Peptidase_S10 415 rfi 417
                    r++
     CCE29701.1 530 RIM 532
                    976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 5217.93
//
Query:       CCE29702.1  [L=303]
Description: probable COQ3-enzyme of ubiquinone (coenzyme Q) biosynthesis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-19   69.1   0.0    5.9e-19   68.5   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    3.3e-17   62.9   0.0    5.4e-17   62.2   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
      7e-15   55.1   0.0    9.3e-15   54.7   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    6.6e-14   52.5   0.0    1.3e-13   51.5   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
      1e-13   51.7   0.0    1.9e-13   50.9   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    1.1e-05   25.0   0.0    1.5e-05   24.5   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0024   17.2   0.0     0.0046   16.3   0.0    1.4  1  CMAS             Mycolic acid cyclopropane synthetase
      0.006   16.2   0.0     0.0088   15.6   0.0    1.2  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
       0.01   14.8   0.0      0.015   14.3   0.0    1.1  1  Methyltransf_9   Protein of unknown function (DUF1698)
      0.011   15.4   0.0      0.015   14.9   0.0    1.2  1  NodS             Nodulation protein S (NodS)
      0.011   15.6   0.0      0.037   13.9   0.0    1.7  2  Bmt2             25S rRNA (adenine(2142)-N(1))-methyltransfer
       0.22   11.5   0.0       0.33   10.9   0.0    1.3  1  Methyltransf_18  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   3.9e-22   5.9e-19      20     158 ..      99     256 ..      78     260 .. 0.77

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 3.9e-22
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae...........kakkaqkdqfdeq.......eaaepqgkfdlIvlrevle 93 
                      ++a+  +LdiGcG Gi++e++++ ++   vt++D+ p   + a+           k        f+ q         + +++++d+++l+ev+e
       CCE29702.1  99 QDASLTYLDIGCGGGIFAESAARLPTtkRVTAIDPTPSVLAVAKahakkdpslkgK-------LFYTQssiedleVPRSDEERYDVVSLFEVIE 185
                      4566699**************99877679******998777776778855554432.......3322222211113444666************ PP

  Methyltransf_23  94 hvpdppellrqiatllkpgGylllseplaslkedrllldwlyl......vpagrhi..sffsarslkelleea 158
                      hv+ p   l++++  +kpgG+l+ s++++   +++++  +l++      vp+g+h   +++++++l++ +  +
       CCE29702.1 186 HVDEPGPFLQRVRPFVKPGGWLVMSTIAR--TWTSWFTTNLMAeqllriVPRGTHDwnKYINEHELRRFMMSQ 256
                      ***************************87..599999999996666666888855555********9988655 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   3.6e-20   5.4e-17       1      96 []     106     209 ..     106     209 .. 0.92

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 3.6e-20
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCCT..SS-T.T-EEEEEEES-CCC-CCHHHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl...kvefvvadaekl..pfed.nsfDlvvssevlhhvedpekalkeiaR 86 
                      Ld+GcG+G++ae  a+    +rv+++D+++ +l++ak++a++++    k+ + ++++e+l  p  d + +D+v ++ev++hv++p  +l+ ++ 
       CCE29702.1 106 LDIGCGGGIFAESAARLPttKRVTAIDPTPSVLAVAKAHAKKDPSlkgKLFYTQSSIEDLevPRSDeERYDVVSLFEVIEHVDEPGPFLQRVRP 199
                      8**************77788***********************999**9999******9733545547************************** PP

                      HEEEEEEEEE CS
  Methyltransf_11  87 vLkpgGllvi 96 
                       +kpgG+lv+
       CCE29702.1 200 FVKPGGWLVM 209
                      *******985 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   6.2e-18   9.3e-15       3     117 ..     101     227 ..      99     263 .. 0.78

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 6.2e-18
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld..nveFeqgdieeleklled...ekfDlilsnevlnaladpd 91 
                        l++lD+GCG G ++  +a +l + ++v+ iD ++ ++ +A+++a+k  +    +   q++ie+le    +   e++D++  +ev+ ++ +p 
       CCE29702.1 101 ASLTYLDIGCGGGIFAESAA-RLPTTKRVTAIDPTPSVLAVAKAHAKKDPSLkgKLFYTQSSIEDLEVP--RsdeERYDVVSLFEVIEHVDEPG 191
                      56899***************.9999**********************9987655666678******944..4446******************* PP

  Methyltransf_31  92 kileeiervlkpggilliedpr..........llae 117
                       +l+++   +kpgg l+++++           l+ae
       CCE29702.1 192 PFLQRVRPFVKPGGWLVMSTIArtwtswfttnLMAE 227
                      **********************65444433332222 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0     9e-17   1.3e-13       1      99 []     106     207 ..     106     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 9e-17
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg....ssfDlvvasnvlhhlkdirevldnir 90 
                      L+iGcG G +++  ++   ++++t++D+ ps+++ ak++ +k   ++  ++ +++ +++dl+ +    + +D+v +++v++h++++  +l+++r
       CCE29702.1 106 LDIGCGGGIFAESAARLPTTKRVTAIDPTPSVLAVAKAHAKKDPSLK-GKLFYTQSSIEDLEVPrsdeERYDVVSLFEVIEHVDEPGPFLQRVR 198
                      8***************99***************66666666655443.333334444444443355667************************* PP

  Methyltransf_12  91 klLkpgGrl 99 
                        +kpgG+l
       CCE29702.1 199 PFVKPGGWL 207
                      *******97 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   1.3e-16   1.9e-13       2      97 .]     106     205 ..     106     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 1.3e-16
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGBSS...STTTEEEEEEESTGGGSSHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl...nvefvqgdaedlpf...edgsfDlvvssgalhhlsdedlekalkei 89 
                      Ld+GcG G +++ +a+    ++vt++D++++ l+ a+++a+++     ++ + q ++edl+    +++++D+v ++ +++h++++    +l+++
       CCE29702.1 106 LDIGCGGGIFAESAARLPTTKRVTAIDPTPSVLAVAKAHAKKDPSlkgKLFYTQSSIEDLEVprsDEERYDVVSLFEVIEHVDEPG--PFLQRV 197
                      8**************99559********************885446779999*******974334788*******877***99665..9***** PP

                      HHHEEEEE CS
  Methyltransf_25  90 arvLkpgG 97 
                      +  +kpgG
       CCE29702.1 198 RPFVKPGG 205
                      *******9 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     1e-08   1.5e-05     162     266 ..     102     217 ..      84     246 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1e-08
        PrmA 162 geevlDvGtGSGiLaiaaakL.gakkvvavDiDevAvkvakeNaelNkvea.klevalseellk.......eekadvivaNILaevlie...laedikk 248
                   + lD+G+G Gi a  aa+L  +k+v+a+D  +  + vak+ a++    + kl  ++++++ +       ee++dv+    + e + e   +++++  
  CCE29702.1 102 SLTYLDIGCGGGIFAESAARLpTTKRVTAIDPTPSVLAVAKAHAKKDPSLKgKL-FYTQSSIEDlevprsdEERYDVVSLFEVIEHVDEpgpFLQRVRP 199
                 34889***********9999944688*******************996555344.3332222212223355899**9964434444433455899**** PP

        PrmA 249 lvkeggllilSGilkeka 266
                 +vk+gg+l++S i ++ +
  CCE29702.1 200 FVKPGGWLVMSTIARTWT 217
                 ***********9977655 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.1e-06    0.0046      65     181 ..     104     226 ..      93     252 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.1e-06
                 EEEEES-TTSHHHHHHHHHH--E.EEEE..ES-HHH..HHHHHH..HHHTS-SSS-EEEEES-GGG---.--SEEEEES-GGGTSGGGHHHHHHHHHHH CS
        CMAS  65 tlLdiGcGWGslvrraverydvk.vvgl..TlSkeq..aklakk..rvdeldlerkvevklldyedlde.kvdrvvsvgafehvgkenydtffkklkkl 155
                 t LdiGcG G  +  a++    k v ++  T S     +++akk  +++   +  + +++ l+    de ++d v+ ++++ehv +     f +++   
  CCE29702.1 104 TYLDIGCGGGIFAESAARLPTTKrVTAIdpTPSVLAvaKAHAKKdpSLKGKLFYTQSSIEDLEVPRSDEeRYDVVSLFEVIEHVDEP--GPFLQRVRPF 200
                 78******9999999987644331434422544322002222321134444445555555555544444699999999*****9765..68******** PP

                 S-TT-EEEEEEEEE--HHHHHCTTCC CS
        CMAS 156 lkedGllllhtitslhkkelaerglk 181
                 +k++G l++ ti ++ +++ +++ ++
  CCE29702.1 201 VKPGGWLVMSTIARTWTSWFTTNLMA 226
                 ************99988887765554 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.9e-06    0.0088      31      78 ..     101     148 ..      93     178 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.9e-06
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHT CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenlean 78 
                 +s + lD+GcG G+ + ++a+   + +vt++d     l++ak+ +++ 
  CCE29702.1 101 ASLTYLDIGCGGGIFAESAARLPTTKRVTAIDPTPSVLAVAKAHAKKD 148
                 55568***********99999999999******999999999988764 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   9.8e-06     0.015     118     220 ..     104     212 ..      89     215 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.8e-06
                     EEEEET-TTSHHHHHHHH.CT-SEEEEE---HHHHHHHHHHHCC.TTTTSSEEEE---GGGS-T....---EEEEEEES-GGG-S-HHHHHHHHH CS
  Methyltransf_9 118 tildvGcgnGyhlwrmvg.egaklvvGidPselfliqfeavrkl.lgedqrahllplgieqlpe....leafdtvfsmGvlyhrrsPldhllqlk 206
                     t ld+Gcg G +    +    +k v  idP+   l   +a  k   + + + +    +ie+l+      e +d+v +  v+ h   P   l++++
      CCE29702.1 104 TYLDIGCGGGIFAESAARlPTTKRVTAIDPTPSVLAVAKAHAKKdPSLKGKLFYTQSSIEDLEVprsdEERYDVVSLFEVIEHVDEPGPFLQRVR 198
                     569*******99876554146788999***9999999998765414556667777889**99643344688************************ PP

                     CTEEEEEEEEEEEE CS
  Methyltransf_9 207 dqlvkgGelvletl 220
                       ++ gG lv+ t+
      CCE29702.1 199 PFVKPGGWLVMSTI 212
                     ***********996 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   9.9e-06     0.015      46     125 ..     104     193 ..      92     233 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.9e-06
        NodS  46 dalevGcaaGalterla..pyckrltvvdvveeaiararervkess....hiswivsdvqqf....stdekfdlivvaevlyyiedvael 125
                   l++Gc  G ++e  a  p +kr+t +d  ++ +a a+   k+ +    ++ +++s ++ +    s +e++d++   ev+ ++++   +
  CCE29702.1 104 TYLDIGCGGGIFAESAArlPTTKRVTAIDPTPSVLAVAKAHAKKDPslkgKLFYTQSSIEDLevprSDEERYDVVSLFEVIEHVDEPGPF 193
                 469***********99855789*******999988777777777661111456777888777333356899****999999888875554 PP

>> Bmt2  25S rRNA (adenine(2142)-N(1))-methyltransferase, Bmt2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.2   1.8e+03      43      80 ..      92     132 ..      86     143 .. 0.66
   2 ?   13.9   0.0   2.5e-05     0.037      97     174 ..     166     257 ..     156     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
        Bmt2  43 kleelkleekklrlLevGa...lstknaiskvklldvtrID 80 
                 ++++++l++++l+ L++G+   + ++ a+   ++ +vt+ID
  CCE29702.1  92 ETTSSALQDASLTYLDIGCgggIFAESAARLPTTKRVTAID 132
                 56677788888999***984434444444444445577776 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.5e-05
        Bmt2  97 plpkkeeekFdiislSLVlNfvpdaakRGemlkrvtkfLkpkkk.................aslsslflvLPlpCvtnSrylteerlrailsslG 174
                  +p+++ee++d++sl  V+  v+++   G  l+rv  f kp +                   +  +l+ ++P       +y++e++lr+ + s G
  CCE29702.1 166 EVPRSDEERYDVVSLFEVIEHVDEP---GPFLQRVRPFVKPGGWlvmstiartwtswfttnLMAEQLLRIVPRGTHDWNKYINEHELRRFMMSQG 257
                 69*****************999965...99***********999999999999999999865667788899999999999999999999887765 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00022      0.33       7      61 ..      93     148 ..      87     174 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
  Methyltransf_18   7 aiaslvekgs.rvaDiGtDHgylpiylvkegkakkviasDinegplekakenieka 61 
                      +  s +++ s + +DiG+  g+ +  +++  ++k+v+a+D  ++ l+ ak++++k 
       CCE29702.1  93 TTSSALQDASlTYLDIGCGGGIFAESAARLPTTKRVTAIDPTPSVLAVAKAHAKKD 148
                      55666666666899**************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2162.98
//
Query:       CCE29703.1  [L=231]
Description: probable RIB3-3,4-dihydroxy-2-butanone 4-phosphate synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-78  260.7   0.0    7.4e-78  260.5   0.0    1.0  1  DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase


Domain annotation for each model (and alignments):
>> DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.5   0.0   4.1e-82   7.4e-78       2     192 .]      16     218 ..      15     218 .. 0.97

  Alignments for each domain:
  == domain 1  score: 260.5 bits;  conditional E-value: 4.1e-82
                    HHHHHHHTT--EEEESSTTTT-BEEEEEEGGG--HHHHHHHHHHB-S--EEEEEHHHHHHTT--BSSSS-SSTT---BB--EEESS.T-SSS-SHH CS
  DHBP_synthase   2 eaiealkaGkfvivvDdedrenegdLiiaAekvtpekvafmirhasGlicvalteeradeLeLplmveenedkhktaftvsvdaae.gttTGIsaa 96 
                    ++iea+++G+f++v+Dd++rene+dLiiaAe++t+ek+a+m+r++sGlic+++ ++rad+L Lp+mv+ ++d ++ta+t+svdaa+ ++tTGIsa+
     CCE29703.1  16 DTIEAFRRGEFILVLDDPSRENEADLIIAAEHLTTEKMAWMVRYSSGLICAPIMPSRADALALPVMVPASQDARGTAYTISVDAAHpSVTTGISAH 111
                    689**********************************************************************************988******** PP

                    HHHHHHHHHH-TT--GGGEEEEEEEEEEEE-TTGGGTS-SHHHHHHHHHHHTTS-SBEEEEEBB-TTS...........CB-BHHHHHHHHHHHT- CS
  DHBP_synthase  97 DRalTirkladpkakpedfrrPGhvfplrareggvleRrghTEaavdLarlaglkpaavicellnddg...........tmarrdeleefakkhgl 181
                    DR+l +r ladp++++e+f rPGh++plra++ggv++R+ghTEaa++++rlagl+ aa+i+el++d +            m+r ++ ++fa+k+gl
     CCE29703.1 112 DRTLCCRFLADPQSRAESFIRPGHILPLRAAPGGVRQRTGHTEAAIEFCRLAGLNSAAAIAELVEDGEpnpgeplitraGMMRGEDNIRFARKWGL 207
                    ****************************************************************65548899*****988**************** PP

                    EEEEHHHHHHH CS
  DHBP_synthase 182 kiitiedliey 192
                    k++ti+dl++y
     CCE29703.1 208 KVCTIADLVQY 218
                    *********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1752.68
//
Query:       CCE29704.1  [L=1051]
Description: uncharacterized protein CPUR_03551 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-11   43.7   0.0    5.9e-11   42.3   0.0    1.7  1  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
  ------ inclusion threshold ------
       0.07   12.7   5.4       0.14   11.8   5.4    1.4  1  Proton_antipo_C  NADH-dehyrogenase subunit F, TMs, (complex I
       0.38    9.5   3.8       0.72    8.5   3.8    1.4  1  Presenilin       Presenilin


Domain annotation for each model (and alignments):
>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   9.8e-15   5.9e-11      13      71 ..     914     972 ..     894     978 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 9.8e-15
  Atx10homo_assoc  13 vyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLe 71 
                      +  n++vq+++++ +g+  +L++c +Dd+nPf +e+ +++++ Ll+g e++ ++ +eL 
       CCE29704.1 914 SPGNPTVQSQMVKFNGIVPLLNSCAYDDHNPFAKERVTICLKWLLDGCEAANNFFRELV 972
                      55799**********************************************99999885 PP

>> Proton_antipo_C  NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   5.4   2.3e-05      0.14      18     117 ..     458     562 ..     448     578 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.3e-05
  Proton_antipo_C  18 ysgkknssfysiSlwGkeeskkinknlllltltknnnekvsffsk..ktyridenvrnilrsfititefen....kktlsyPhEsdntmlfpll 105
                       +++++++ y i  w k++++ ++k+ +  +++++++++++  +k  +++ri+++v+++++ + ti++++n    k+ +++P  s  tm+  l+
       CCE29704.1 458 LNNTTHKTKYRIKDWTKDKTEDKAKDKTKDKTKDRTKDRTKDRTKdrTKNRIKNKVTHKTT-YKTINKISNkitnKTLSTTPSASITTMMTMLI 550
                      3445666679******988887666645444444444444433332266688888887774.455555544111155669***********999 PP

  Proton_antipo_C 106 vLvlftlfvGli 117
                      + + +t++v  +
       CCE29704.1 551 ITITYTIMVTKV 562
                      999999999665 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.8   0.00012      0.72     177     299 ..     396     517 ..     390     564 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00012
  Presenilin 177 lLvvisiyDlvAVLcPkGPLrlLvelaqerneeifpaLiYsatvvvlaaeekkaevaeseeeeeaekkkeeasesskeeeseeesseksaqsse...se 272
                  ++v+s+ D+++++  kG ++   ++      +i   ++ s ++ ++  +++ +++a+++++++a ++++++++++ ++ +++++++k + +++   ++
  CCE29704.1 396 AITVLSVMDVITIMKKKGNMKTTKNTTMVTPVDI---IMISRNINTSIIRSMVRRTAMNTNTNKALNNTTHKTKYRIKDWTKDKTEDKAKDKTKdktKD 491
                 5679999999999999999999888887766666...66666666665555544445554444444444444444433333333322222222211111 PP

  Presenilin 273 eeseeesseaessaeesseekeseess 299
                 +++++++ +++++++++ ++k  ++++
  CCE29704.1 492 RTKDRTKDRTKDRTKNRIKNKV-THKT 517
                 1111111111111111111111.1111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1051 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2156  (0.120252); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.48
# Mc/sec: 6588.99
//
Query:       CCE29705.1  [L=307]
Description: probable MEU1-multiple enhancer of UAS2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  135.7   0.3    1.7e-39  135.5   0.3    1.1  1  PNP_UDP_1  Phosphorylase superfamily
  ------ inclusion threshold ------
       0.14   12.2   0.1       0.26   11.3   0.1    1.4  1  DUF3759    Protein of unknown function (DUF3759)


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.5   0.3   1.9e-43   1.7e-39       1     233 [.      13     255 ..      13     256 .. 0.91

  Alignments for each domain:
  == domain 1  score: 135.5 bits;  conditional E-value: 1.9e-43
                 CEEEEESSH....HHHHHHHHHEEEEEEEEEE.TTEEEEEEEETTEEE.EEEE--....SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESSTTT-TT- CS
   PNP_UDP_1   1 kiaiivgsp....gevellaespleetpfgregrgfkfvtGtlkgkpv.vivstG....iGkpnaavvaeirllkefgvkaiiriGtaGglnpdlkvGD 90 
                 +ia+i+g++    +++e++ae    +tp+g +     +++ ++kg+++ +++++G      ++ +  +a+i++l + gv+ +i+++++G+l++++k+ D
  CCE29705.1  13 RIAVIGGTGlgqlEGYEPIAEL-NPNTPWGYP--ASPIRILSHKGVNIaFLARHGlhhqFAPHEVPNRANIAALRHIGVRCVIAFSAVGSLQEAIKPMD 108
                 69********************.*********..*********9999989*****99987777777999****************************** PP

                 EEEEEEEEE.SSSCCGCCTHHCCTCCCCTTSSEE--HHHHHHHHH...CHHTTTTTEEE.EEEEEESESS-CHHHHHHHHHHTC-CEEESSHHHHHHHH CS
   PNP_UDP_1  91 vvipddain.fdgrsplygpkeegqyfpdsydapadpelrallke...aaealgikvhr.GvvatadgfyaeteaelrllrrlgadaveMEtaavaqlA 184
                 +v+pd++i+ + g +p ++++ + +++++++d+ +d+ l a++k+   + e  g+ +h  G+v++++g++++t+ae++++r++g ++++M+t ++a lA
  CCE29705.1 109 FVVPDQVIDrTKGIRPFTFFEGGVVGHVGFADP-FDAGLAAVVKRcakSMEGDGVVLHDkGTVVVMEGPQFSTRAESHMYRSWGGSVINMSTLPEAKLA 206
                 *********766777777777778999999999.********999555555555999999*************************************** PP

                 HHTT--EEEEEEEEETTTBETT.CTCH.HCCCHHHHHHHHHHHHHHHHHH CS
   PNP_UDP_1 185 relgipfaairvvsdlaaggad.aeatheeveefaqeaaknaaalllall 233
                 re+++ + +i++ +d ++ +++ +  ++e v++ ++++++na++l+ a++
  CCE29705.1 207 REAELSYQVIAMATD-YDCWHSfEDVNVELVMKYMKANVNNAKRLVAAVV 255
                 ***************.666655256667******************9997 PP

>> DUF3759  Protein of unknown function (DUF3759)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.9e-05      0.26      10      56 ..     206     255 ..     198     283 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.9e-05
     DUF3759  10 ehkaklshellagAAafeAvkayedhqrk...eGkpvshafaKellAgfa 56 
                  ++a+ls++++a A  +   + +ed   +   +  + + + aK l+A+++
  CCE29705.1 206 AREAELSYQVIAMATDYDCWHSFEDVNVElvmKYMKANVNNAKRLVAAVV 255
                 4799*********************8877565667788888999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2225.22
//
Query:       CCE29706.1  [L=360]
Description: uncharacterized protein CPUR_03553 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-78  261.4   0.0    1.1e-77  261.2   0.0    1.0  1  Methyltransf_33  Histidine-specific methyltransferase, SAM-de
  ------ inclusion threshold ------
      0.022   15.5   0.0      0.054   14.2   0.0    1.7  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_33  Histidine-specific methyltransferase, SAM-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.2   0.0   1.2e-81   1.1e-77      11     308 ..      41     341 ..      22     342 .. 0.92

  Alignments for each domain:
  == domain 1  score: 261.2 bits;  conditional E-value: 1.2e-81
  Methyltransf_33  11 skpktlpskllYDarGselFeeitelpeYyptrtEiaiLqehaaeiaaai.paatlvelGsGsseKtrlLLealeaaekeltYvplDvseeaLe 103
                      +++ +lp++llYD+ G+ ++++i++ pe+y+t++Ei++L+++ + i  ++ p  t+v++G+G+++K ++LL+a+e+a+ ++tY++lD+s+++L+
       CCE29706.1  41 NNKPSLPDELLYDDGGLPIWNDIISVPEFYQTHDEISLLKKYGETITGLVaPGVTIVDIGAGDTRKANFLLDAFERAKVPATYLALDISAASLA 134
                      2346********************************************995666*********************9999*************** PP

  Methyltransf_33 104 ealealaaeyp....sleveglvgdyedglewlaslpeaederrlvlflGssigNlepeeaaafLrklraalgpgdllLlGvD...lvkdeekl 190
                      +++e+la+ +p     ++++gl+g++edg +++a++ +   ++rl+l+lGs+++N ++  a+++Lr+++a ++pgdl++ G+D     +  +k+
       CCE29706.1 135 HNIERLAKLHPaprsYVTCTGLWGTFEDGQDFVARHIK---GPRLFLSLGSVLCNDDWVLAVNHLRAWKAVMRPGDLMIAGMDahmAEEFGDKI 225
                      ********88877889****************999885...9*****************************************544345568** PP

  Methyltransf_33 191 eaAYndsagvtaaFnlnllerinrelga.dfdledfehvaew.naeegriemylrskrdqtvrvealdltvafkagekirteiSyKyteeevre 282
                      e AY+ + +++++F+ln++++inr lg+  f +++++++ +  +  ++r+++y+r+kr++++ +     +  ++ ge++++++S+Kyte++v+ 
       CCE29706.1 226 ETAYHVRGDLYRKFFLNGFDNINRCLGHdIFVEANWQFCCQLeHTPTTRHRVYFRAKRNIECPLL----NRIIQTGEEVDWFDSHKYTENNVQI 315
                      ****************************88************77899***************876....499********************** PP

  Methyltransf_33 283 lleaaglevlkvWtdeksdfalyllq 308
                      ++++agl+v +vW+++ s+f++yl++
       CCE29706.1 316 MCSKAGLSVIDVWKADGSEFRQYLIK 341
                      ***********************986 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   6.1e-06     0.054       1      46 [.      97     146 ..      97     167 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.1e-06
  Methyltransf_12   1 LeiGcGtGsllrallekl....pdieytgvDispsaiedakeklakrenn 46 
                      ++iG+G+ + +  ll+++     +++y+++Dis++++++  e+lak ++ 
       CCE29706.1  97 VDIGAGDTRKANFLLDAFerakVPATYLALDISAASLAHNIERLAKLHPA 146
                      59****************99999*********************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2808.38
//
Query:       CCE29707.1  [L=826]
Description: uncharacterized protein CPUR_03554 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-21   76.8   0.4      2e-21   76.2   0.4    1.2  1  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.4   1.1e-25     2e-21       4     359 ..     397     781 ..     394     815 .. 0.86

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 1.1e-25
  Fungal_trans_2   4 dyyldnvapllspvpessnpfrkvllplalsnkallhallalsafhlqskgpkdslereakrykslalkelqealaelsstlsrnekykdiLaai 98 
                     ++y++n +p  s+  ++ n ++k + ++ +++ ++  a+ +l++++    +p ds+++++++    a k++ + l+++ +  + ++  +++++  
      CCE29707.1 397 MFYIRNWCPGRSVLEDT-NLWLKDFAQM-HKSVGVRSAIQSLAGIYIYDYQPLDSIRERVNQRFADAEKRFTQLLNDPATYCD-ESLANELITIG 488
                     78999999988888887.9999988886.67779*************************************************.66666666666 PP

  Fungal_trans_2  99 Lllcsieissgdvsd.......wrvhLeaatsliksrggskasssslsskarfllrifayldilssttlgrgpsfpseeyekllen......... 177
                      +l + +i+  +++        w + ++  ++l++      +   + s+ +   lri +++ +  +  l  +p  p  + e++  +         
      CCE29707.1 489 VILSMQDIVLTERRLkkpfvprWLQGFRRGEELLEATDHG-LRFWRTSNVQTSALRISQSVIVGRAVILA-QPMSPLPSPEEFNVEreasrfgwl 581
                     *********9998888999999**************9999.99******************988888888.333333333333333447888889 PP

  Fungal_trans_2 178 ..kkeesdsgldplmGcsnslilliseisrLarekrsarkdseleplsileeaseleqrllswkprssdlepdldeterassls........... 259
                        +e ++++++   G+s+ l++ +s+++  a+++r+  ++  +     ++ +++    +++w+p+s+d+e  + +   ++  +           
      CCE29707.1 582 lyGTERDMYQIHGGCGFSKKLLHTFSQVTYCAARLRQDAES--PVVPMTADYIQQELLGMRQWSPESQDWEAVRTSRAMIEW-Vrqqplgykide 673
                     9999999999**********************999999999..677777777777777777899999999666555555544.4599***99999 PP

  Fungal_trans_2 260 ....kdl.telfrlaaliylyrlvlglppsspevqelvkkllellellpsspv...aiasLlWplFiaGceavdeddRdfvrrrleeleqsrl.g 345
                         +d+ +e++r+aa++yl+++v +lp+++p++ + +++l ++++ +p+s++   a+a+L +p F  G+ a+ +++R + +r+++e+ q+ +  
      CCE29707.1 674 npimTDVtAEAWRIAAMLYLLCRVFRLPRNHPKIISNLDDLAQCIAIMPTSGMqftAQAPL-FPVFLLGILATLPEHRAMSQRWFDEVLQTPVrS 767
                     98877779*********************************************97444444.6**************************88889* PP

  Fungal_trans_2 346 nvrrarqvleevWr 359
                     +v  +++ l+ +W+
      CCE29707.1 768 SVPPLYATLKRIWE 781
                     *************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 5903.79
//
Query:       CCE29708.1  [L=336]
Description: uncharacterized protein CPUR_03555 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   11.7   0.1        0.4   10.7   0.1    1.6  1  TMEM213   TMEM213 family


Domain annotation for each model (and alignments):
>> TMEM213  TMEM213 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   2.2e-05       0.4      14      45 ..     223     255 ..     213     289 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.2e-05
     TMEM213  14 pdpgtleq.cpdvdfcpkaarcckaGvdeyGWi 45 
                  d  +l q  ++v +cpk  +c k Gvd +G +
  CCE29708.1 223 IDMNALRQrGKGVYYCPKGVKCDKGGVDKDGNL 255
                 55555555257899****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      682  (0.0380389); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2532.77
//
Query:       CCE29709.1  [L=428]
Description: related to sarcosine oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-27   97.6   0.0    1.5e-27   97.2   0.0    1.2  1  DAO            FAD dependent oxidoreductase
    5.2e-06   25.9   0.1     0.0038   16.5   0.0    3.0  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    6.7e-06   26.2   0.1      0.076   13.0   0.0    2.9  3  NAD_binding_9  FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.018   14.1   0.0       0.26   10.3   0.0    2.1  2  FAD_binding_2  FAD binding domain
       0.03   14.6   0.0      0.074   13.3   0.0    1.7  1  TrkA_N         TrkA-N domain
      0.065   12.4   0.0       0.51    9.4   0.0    2.1  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
       0.13   11.3   0.1       0.39    9.7   0.0    1.8  2  GIDA           Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   5.7e-31   1.5e-27       2     352 .]       4     387 ..       3     387 .. 0.71

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 5.7e-31
                 EEEECTSHHHHHHHHHHHHT.T...EEEEESSSSTTS.SGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHH CS
         DAO   2 vviiGGGiiGlstAyeLarr.g...Vtllekgdiags.gaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeee 95 
                  +iiG+G +G++tA+ L +r g   V+l++   ++   +aS+   ++++  + ++ +     r+ ++a+ ++r ++     ++ y++ G+l     ++ 
  CCE29709.1   4 YLIIGAGNFGAGTALSLIQRqGtskVILIDTTQFPNPrAASHDVNKIVRDDYPDKLY----MRMLKRAMPLWRNHDLY-K-QW-YHEVGMLRADP-SN- 93 
                 58***************9775799********999955**********996654444....4**********777732.2.25.999******63.32. PP

                 HHHHHHHHHHHHHTTTTE..EEEEHHHHHHHSTT...ST...TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEE.EETCEEEEEEE CS
         DAO  96 lealdkllallleaglda..elldaeevrelepa...lp...gllgalfypdtgqvdpakltaalaraaealGveilegtevtglee.edgkvwgvert 185
                 + a  +++ + +++g+++  ++l  eevr+++ +   ++   gl + l++p+ g +++ k++ a+ ++a +lGv+ + g    +l+  ++g   gv  t
  CCE29709.1  94 FGA--DSISSYKALGIENssHFLPVEEVRQRWNGvfaTAnfdGLDKILYNPSVGFAEADKALGAVIQQAVNLGVNYVVG-AMSRLSFgTNGECIGV--T 187
                 443..33444455899776469*99*******888652267677788********************************.7777755355888999..4 PP

                 CT.EEE.EEEEEEEE--GGGHH.HH.HTT...CTT..TSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE...EEETTTTEEEEEETTSEEEE.EESSE. CS
         DAO 186 tp.gen.daadavVnaaGawsd.ll.gll...kel..dlpispvrgqvlvlkplseklvspaailpvpe...tdddgrgvyvtprkdgrvlv.Ggtad. 270
                  + ge+ +a d++ +a+Ga +  ll + +   ++l    ++  + g v   ++++ ++ ++    pv++   +   g g+ ++   +g++++ +     
  CCE29709.1 188 LEsGETlHA-DKILLATGARTAsLLvQSApqrPQLhaGNRVL-ATGAVTFWAKVHGAQKEKLSNVPVLKnclPQVKGEGMSMLK--NGTLKFnCDMCFt 282
                 454888565.************87766665333333213322.44444444677775444334444444777777777777777..6777764443336 PP

                 ...............EETTCSSTSCSHHHHHHHHHHHHHHSGGG.....CG..EEEEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHH CS
         DAO 271 ...............eesgdddpevdeedidellealrklfPql.....gd..vlrkwaGlrp.lpdglpligetpgvkglylatGhsghGltlapatG 346
                                ++++  ++ + ++ i  + e++rk + +l     +d  +++ + +  + +p +++li ++p+ +gly+atG s hG+++ p++G
  CCE29709.1 283 nyvecpstgqrlsmtPDESVYNVWTGPKFIKFFQERARKTLDGLygkevRDvaIESYRICWDAsTPTHDFLITPHPHCQGLYVATGGSFHGWKFLPVIG 381
                 6676665555555552222222345555888899999999988554344443355444455554469*******99999******************** PP

                 HHHHHH CS
         DAO 347 kllael 352
                  ++a++
  CCE29709.1 382 DYIADM 387
                 ****97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.5e-06    0.0038       2     114 ..       3     210 ..       2     215 .. 0.74
   2 ?    2.7   0.0     0.024        62      98     133 ..     221     256 ..     216     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.5e-06
                  SEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH........................................ CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................ RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvaedaeias........................................ 57 
                  ++++iG+G  G  +al l q     kv+l+ ++++++n +   + +   v++d+   +                                        
   CCE29709.1   3 SYLIIGAGNFGAGTALSLIQrqGTSKVILI-DTTQFPNPRAASHDVNKIVRDDYPDKLymrmlkramplwrnhdlykqwyhevgmlradpsnfgadsi 99 
                  6789****7677777776664378999999.999999999999888888888887666999999999999***************9999999999999 PP

                  ..........................................................HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC..... CS
                  ..........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
  Pyr_redox_2  58 ..........................................................evvkklnqgielllgeevvkidpgkkkvklekkke..... 92 
                                                                            +  + +n g+ ++ g    ++ +g          +     
   CCE29709.1 100 ssykalgiensshflpveevrqrwngvfatanfdgldkilynpsvgfaeadkalgaviQ--QAVNLGVNYVVG-AMSRLSFGT---------Ngecig 185
                  99999999999999999888888887777777777777777777777766655554331..122333444444.222222222.........023344 PP

                  ...TCEEEEEESEEEE---EEE-BC CS
                  ...xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  93 ...gdeekiaydklvlAtGssprdl 114
                     +++e++ +dk++lAtG+++  l
   CCE29709.1 186 vtlESGETLHADKILLATGARTASL 210
                  44577899***********998766 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.024
                  EEESEEEE---EEE-BCTCTTC.TTBEECCSECHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  98 iaydklvlAtGssprdlgipGvaenvgklvrtldsa 133
                  + +++ vlAtG+ ++  +++G++++   +v  l+++
   CCE29709.1 221 LHAGNRVLATGAVTFWAKVHGAQKEKLSNVPVLKNC 256
                  567788****************88887777777666 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0     3e-05     0.076       2      78 ..       6      86 ..       5     106 .. 0.72
   2 !    9.8   0.0   0.00028      0.71     114     155 ..     162     205 ..     150     206 .. 0.78
   3 ?   -2.5   0.0       1.8   4.6e+03      57      78 ..     292     320 ..     289     333 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3e-05
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepga........grvwrtdqseelllNvpasemslftddpptfaeWlrerga 78
                   i+GaG  G+ ++  L++r   +   ++ l+d +++ +         ++ r+d ++ l + +  ++m+l+ +  + + +W++e g 
     CCE29709.1  6 IIGAGNFGAGTALSLIQR---QGTSKVILIDTTQFPNpraashdvNKIVRDDYPDKLYMRMLKRAMPLWRN-HDLYKQWYHEVGM 86
                   9*****************...58889999997666430011111144556667889999999999999875.5888999999885 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00028
  NAD_binding_9 114 gvtvevhraevvdleeradgq..avlladgaslaadaVvLAlGh 155
                    ++ v+++ +   +l+   +g    v+l++g++l+ad++ LA+G 
     CCE29709.1 162 NLGVNYVVGAMSRLSFGTNGEciGVTLESGETLHADKILLATGA 205
                    467788888888888888884448******************95 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.8
  NAD_binding_9  57 semslftddp.......ptfaeWlrerga 78 
                    +++s+ +d++       p+f ++ +er+ 
     CCE29709.1 292 QRLSMTPDESvynvwtgPKFIKFFQERAR 320
                    67889999999999999999999999984 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.036        93       3      32 ..       5      36 ..       3      46 .. 0.75
   2 ?   10.3   0.0    0.0001      0.26     140     256 ..     149     258 ..      57     276 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.036
                   EEE--SHHHHHHHHHHHH.TTT.-EEEEESSS CS
  FAD_binding_2  3 iViGsGlAGLaAAleaae.aGl.kvavvekeq 32
                   ++iG+G  G   Al++ + +G  kv++++ +q
     CCE29709.1  5 LIIGAGNFGAGTALSLIQrQGTsKVILIDTTQ 36
                   8*****65555555554438889*****9887 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0001
                    HHHHHHHHHHHHHTCTEEEEESEEEEEEEE.CTTEEEEEEEEETTTTCEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHH CS
  FAD_binding_2 140 ghallarlvesarkagvdfqerteadeLiv.edgrvtGavvenpesgrevrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalal 234
                      + l +++++a ++gv +    ++ +L   ++g++ G+++e   sg+  +++a++++latg+  ++ll + +++ ++ ++ n + +tG  +  a 
     CCE29709.1 149 ADKALGAVIQQAVNLGVNYVVG-AMSRLSFgTNGECIGVTLE---SGE--TLHADKILLATGARTASLLVQSAPQRPQLHAGNRVLATGAVTFWAK 238
                    5555666666664444443333.24445444588*******9...444..578*************9999999****************9998888 PP

                    CTTSSEES..TT-EEEEEEEET CS
  FAD_binding_2 235 ragaalnddrmeevqfhPtslv 256
                      ga+ ++  +++v+ +  +l+
     CCE29709.1 239 VHGAQKEK--LSNVPVLKNCLP 258
                    88888666..999988777666 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.9e-05     0.074       1      43 [.       4      48 ..       4      64 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.9e-05
                EEEES-SHHHHHHHHHHHHTT..EEEEEEESSHHHHHHHHHTTSE CS
      TrkA_N  1 iiiiGlGrvGrslaeeLsegg..kdvvvidkdeerveelreegle 43
                ++iiG+G++G   a  L +++  ++v++id+ +    +++ + ++
  CCE29709.1  4 YLIIGAGNFGAGTALSLIQRQgtSKVILIDTTQFPNPRAASHDVN 48
                68*****************666977*****998777777777666 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0002      0.51     195     257 ..       5      67 ..       2      83 .. 0.88
   2 ?   -0.2   0.0      0.17   4.3e+02     325     341 ..     190     206 ..     171     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0002
  K_oxygenase 195 aVvGsGqSaaeifedllrrqkkvelklvtrsealeplddspfvneifsPeyvdyfyslpeekr 257
                  +++G+G  +a  +  l++rq ++++ l+   +  +p   s+ vn+i+  +y d+ y +  ++ 
   CCE29709.1   5 LIIGAGNFGAGTALSLIQRQGTSKVILIDTTQFPNPRAASHDVNKIVRDDYPDKLYMRMLKRA 67 
                  79**************************************************99998766555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.17
  K_oxygenase 325 eeetlevdavvlATGYr 341
                  + etl++d ++lATG r
   CCE29709.1 190 SGETLHADKILLATGAR 206
                  568999999****9965 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.44   1.1e+03       4      28 ..       6      32 ..       4      51 .. 0.66
   2 ?    9.7   0.0   0.00015      0.39     117     154 ..     171     208 ..     144     256 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.44
                EE-SSHHHHHHHHHHHHT.T.--EEEE CS
        GIDA  4 ViGgGhAGceAAlaaarl.G.akvlLi 28
                +iG+G  G   Al + ++ G  kv+Li
  CCE29709.1  6 IIGAGNFGAGTALSLIQRqGtSKVILI 32
                8****9888888776443132567776 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00015
                 -EEEEEE.CTTEEEEEEETTS-EEEECEEEE--TT-BT- CS
        GIDA 117 eveeliv.eekkvkgvvtedgetikakavviatGtflkg 154
                  +++l+  +++++ gv++e+get++a+++ +atG+  ++
  CCE29709.1 171 AMSRLSFgTNGECIGVTLESGETLHADKILLATGA-RTA 208
                 555555413599**********************9.332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2805.23
//
Query:       CCE29710.1  [L=1073]
Description: related to MET10-sulfite reductase flavin-binding subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-63  213.6   0.0    3.9e-63  213.0   0.0    1.3  1  FAD_binding_1    FAD binding domain
    3.3e-10   40.6   0.0    8.4e-10   39.3   0.0    1.6  1  NAD_binding_1    Oxidoreductase NAD-binding domain
    2.4e-06   27.8   0.3    7.8e-06   26.1   0.1    2.0  2  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma
    0.00011   22.4   0.1    0.00023   21.3   0.1    1.5  1  POR              Pyruvate ferredoxin/flavodoxin oxidoreductas
     0.0026   17.7   0.2      0.007   16.2   0.2    1.7  1  Transketolase_C  Transketolase, C-terminal domain


Domain annotation for each model (and alignments):
>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.0   0.0   1.1e-66   3.9e-63       2     222 .]     682     894 ..     681     894 .. 0.97

  Alignments for each domain:
  == domain 1  score: 213.0 bits;  conditional E-value: 1.1e-66
                    --BTTB-EEEEEEEEEE---.-SS--EEEEEEE-TTBT----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSSSEEH CS
  FAD_binding_1   2 pfdakkvflakvlknreLtkpesernvihveldisdsglkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprleptTl 97 
                    p+ + k   ++v++nr+Lt+p+++r+++h+e+d+ dsgl+Y++G++lg+++ N+e++V e+++ +gldp  +e+v+++a +     + + le++T+
     CCE29710.1 682 PDLSVKTAKIRVKENRRLTPPDYDRHIFHIEFDLGDSGLTYKIGEALGIHAGNDEAEVVEFIKAYGLDP--NELVRVPARE-----DSESLEVRTV 770
                    55667788899**********************************************************..*********9.....7999****** PP

                    HHHHHHTB--SS---HHHHHHHGGG-SSHHHHHHHHHHHH-HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S-TTTT CS
  FAD_binding_1  98 rqalkyylditgppskqlleaLaefaseeeekqkLekLssdegakeykelklneartllevleefpsvklplefLlevlpqLkpRyYSiSssskvh 193
                    +qal  ++di+g+p k+++e+La fa+++ ek+ Le+L+s +ga+++k++  +++ t+++vleef s+++++  L+++++ Lk+R+YSi+s++ v+
     CCE29710.1 771 HQALVNNMDILGKPPKRFYEELADFATDDVEKKALEALASAAGAEDFKRRSEVDMLTYVDVLEEFVSARPSFPDLIKMISPLKRREYSIASAQAVT 866
                    ************************************************************************************************ PP

                    TTEEEEEEE--EE---SSS--EE-HHHHH CS
  FAD_binding_1 194 pdevhltvvVveyetdgegrirkGvcsny 222
                    p++v l++vVv++  d +gr r G ++ y
     CCE29710.1 867 PNSVSLMIVVVDWV-DTKGRNRFGHATRY 894
                    **************.7*********9987 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   2.3e-13   8.4e-10       3     100 ..     927    1027 ..     925    1035 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 2.3e-13
                     EEGGGGHHHHHHHHHHHHH.CT..TCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTTEEEEEEE.ESSCTTTSSSEESSHHHHHHHHHHH.... CS
  NAD_binding_1    3 agGtGiaPvrsvlrailee.ak..dktkvvlvyGnrtee.dllyreeleelakklpgrlkvvav.vsreeagweggkgrvqdalleells.... 87  
                     + GtG+aP+r++++ ++++ a+    +++ l+ G r+++ + ly ee+e++   + g +++v +  sr++ +    k ++qd+++e+l +    
     CCE29710.1  927 GLGTGLAPFRAFVQYRAMQkAQgkEIGEILLYLGSRHQReEYLYGEEWEAYL--AAGVVTLVGAaFSRDQPQ----KIYIQDRMRETLQQiska 1014
                     55************9999843377889**********9989**********4..444333333325666665....6*******9999888899 PP

                     HSSTTEEEEEECS CS
  NAD_binding_1   88 lkkeethvyvCGp 100 
                       +++  +y+CGp
     CCE29710.1 1015 YIQDGGSFYLCGP 1027
                     5599999*****9 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   2.2e-09   7.8e-06       2      58 ..     287     345 ..     286     378 .. 0.82
   2 ?   -3.8   0.0       4.6   1.7e+04      55      80 ..     455     480 ..     447     489 .. 0.66

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.2e-09
                 SEEEEE-STHH.HHHHHHHHHHHHTT--EEEEEES--BS--HHHH.HHHSTT-SEEEEE CS
     PFOR_II   2 evvivamGsva.gtaksavdelReegikvGllrlrtlrPFPeeel.kellkkvkkvvvl 58 
                 +vv+v++Gsv  ++ak+   +l  eg kvG++ +r++rPF eee+ k++ ++++ ++vl
  CCE29710.1 287 DVVLVVFGSVEaQVAKQTLGKLSVEGAKVGVINVRIYRPFIEEEFlKSIPSSTRTIAVL 345
                 89********7699**************************9998615566667777766 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.6
                 EEEEE-S--TT-G-HHHHHHHHHTGG CS
     PFOR_II  55 vvvldrnisfgseGqlveevkaalkk 80 
                 v v+    ++ + G++ ++v+a+ k+
  CCE29710.1 455 VHVYSTYDNLTQGGIVRTDVRASKKS 480
                 44444444556679999999988654 PP

>> POR  Pyruvate ferredoxin/flavodoxin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   6.5e-08   0.00023      22     100 ..     454     534 ..     441     558 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 6.5e-08
                 EEEEEEEEESSSSSSCEEEEEEEESS.-SSS--TTSEEEEEESSHHHHH..HHGGGEEEEEEEEEECTCGTT-CCHHHCTS CS
         POR  22 yvqanreygseirGghsyshvrisdepivpsievgeadllvaldaetls..ehldglkpggiiiynseelkpdelkkakee 100
                 +v  + +y+   +Gg + ++vr+s+++  ++ +v ead +v+ d++ l+  ++++ +   g +++  + +k ++++k++++
  CCE29710.1 454 NVHVYSTYDNLTQGGIVRTDVRASKKSLEAPFAVVEADAVVVGDEHILKqiDVVQSIAHSGRLVMKLSNFKVEDVEKRLSA 534
                 5666789******************98999999***************99*****************99999999998774 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2     2e-06     0.007       8      79 ..     284     357 ..     281     374 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2e-06
                      TTSSEEEEEETT.HHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHH.HHHSEEEEEEEEESTTSHHHH CS
  Transketolase_C   8 egkdvtlvayGs.mveealeAaeeLekegisaeVvdlrtvkplDketilesv.kktgrlvvveeavkrgGigse 79 
                      e +dv+lv +Gs + ++a +   +L+ eg ++ V+++r  +p+ +e +l+s+  +t+ + v+ + + ++++++e
       CCE29710.1 284 ETPDVVLVVFGSvEAQVAKQTLGKLSVEGAKVGVINVRIYRPFIEEEFLKSIpSSTRTIAVLGQVRDQVAVEDE 357
                      7899999999974789999************************9999996551566666666666677777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.48
# Mc/sec: 6748.28
//
Query:       CCE29711.1  [L=1147]
Description: related to CCC2-P-type ATPase involved in export of Cu++ from the cytosol into intracellular, secret [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-46  156.4   1.3    5.5e-46  156.4   1.3    1.8  2  E1-E2_ATPase  E1-E2 ATPase
    7.5e-34  117.9   0.1    1.6e-33  116.8   0.1    1.6  1  Hydrolase     haloacid dehalogenase-like hydrolase
    2.9e-21   75.7   0.6    3.8e-10   40.1   0.0    3.8  3  HMA           Heavy-metal-associated domain
    8.3e-06   25.7   0.1    1.5e-05   24.9   0.1    1.5  1  Hydrolase_3   haloacid dehalogenase-like hydrolase
    0.00028   21.4   0.0    0.00076   19.9   0.0    1.8  1  HAD           haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.14   12.4   0.0       0.14   12.4   0.0    3.1  3  DUF3040       Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1       3.6   1.1e+04     148     171 ..     395     418 ..     386     421 .. 0.63
   2 !  156.4   1.3   1.8e-49   5.5e-46      15     181 .]     579     759 ..     559     759 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 3.6
                   HHHHHHHHHHHS-TTHHHHHHHHH CS
  E1-E2_ATPase 148 llralallvaaiPcaLplavplal 171
                   + ra+ ++v aiP     +v ++l
    CCE29711.1 395 FRRAMLTFVLAIPTFVLGIVYMSL 418
                   334777777777777666666555 PP

  == domain 2  score: 156.4 bits;  conditional E-value: 1.8e-49
                   -EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS--------HH CS
  E1-E2_ATPase  15 eeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiarlveeakskktpl 111
                   +   ++++l+ GD +l++ g + ++Dg i+ g++ +des+LTGEs+p++k  gd+vf+Gtv++ + +++ Vt t  +++l++i+++v+e + k++p+
    CCE29711.1 579 TSVTAIDQLEQGDRILVPRGASPAVDGLIITGETIFDESSLTGESRPIKKAPGDQVFAGTVNKGDAITVTVTGTCGKSMLDQIVDVVREGQTKRAPV 675
                   344789******************************************************************************************* PP

                   HHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT..............HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase 112 qkkldklgkvlvpvvlliallvflialllgksla..............eallralallvaaiPcaLplavplalalgarrlakk 181
                   ++++d l++++vpv++lia+++++i+++l    +              +a+ +a+a++v+a+Pc+L+la+p+a+++g + +ak+
    CCE29711.1 676 EQIADLLTSYFVPVITLIAVTTWIIWFSLALRGVvsnpevkasggsaaFAFQFAIAVFVVACPCGLALAAPTAIFVGGGIAAKH 759
                   ****************************66655566677788888888******************************999986 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.1   5.4e-37   1.6e-33       1     210 []     776    1028 ..     776    1028 .. 0.86

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 5.4e-37
                  SSEEEEESBTTTBCHH.HHHHH..HHHHH...........CHHHHHHHHHH......HHCHHHHHHHHHHHHH..HHHHHHHHHETTTE........ CS
                  xxxxxxxxxxxxxxxx.xxxxx..xxxxx...........xxxxxxxxxxx......xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx........ RF
   Hydrolase    1 iktvvfDkdGTLttge.psved..vivsa...........alalaaaletg......sehpigkalvaaakar..sgaltgfatfigrg........ 67  
                  i++vvfDk+GTLt+g  p ++d  +                l+              s hpi+ka+v+++     s +l+++++++grg        
  CCE29711.1  776 IDCVVFDKTGTLTEGGePKITDseL--FPdqnirdfdrqtLLSG------LkaaeeqSSHPIAKAIVNFCGSQipSASLDKIEELPGRGmkasyqdh 864 
                  799**********776588888442..33446664443322222......2444667****************988889****************** PP

                  ..HHHHTHHHHHHHH..HCHHHHHHHHHHHHHHCHHHHHH..................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEES CS
                  ..xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   68 ..ayaigkpewltal..dippdlgaaigsaqsqgrtvall..................qaralavftiadplkvkpeaaeavasLkaagievvlltg 142 
                     +a+g++ ++++l  + +p   ++ +s+  ++++va+                   +  + a++ ++dp  v+pea+ +v++L a+g +v++l+g
  CCE29711.1  865 pfDLAVGSELLMRDLsiHPSPAICSRLQSWKVEAKSVAMMavkprhppsstaddaghdKWSLAAIVSVSDP--VRPEAVAVVEALVARGTQVWMLSG 959 
                  ***************99888999999999999999999999**********9987775559**********..************************ PP

                  SEHHHHHHHHHHTTGGGESEEEEHHCES..STTTSHHHHHHHHHHHT.........STGGGEEEEESSHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  143 dnpetaeraanqlGddyfdaviasdiet..vakpspegkvaaireLq.........gkpeevamVGDgvnDaaalaaAg 210 
                  dn +ta+++a+ +G          + et   a+++p+ k  +i+ Lq          + + vamVGDg+nD++al  A+
  CCE29711.1  960 DNITTAKAVARLVG----------IKETnvLAEVLPSEKADKIKYLQaalhagngrTRRAMVAMVGDGINDSPALTIAD 1028
                  **************..........444477*****************99999886545888*************97665 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.9e-07   0.00088       4      61 ..      17      77 ..      14      78 .. 0.79
   2 !   40.1   0.0   1.3e-13   3.8e-10       1      62 []     214     279 ..     214     279 .. 0.90
   3 !   12.0   0.0   7.3e-05      0.22       2      23 ..     303     324 ..     302     326 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.9e-07
         HMA  4 vsgmhCagCaakvekvLselpgV..esvkvdlatktvtVegdaes.tklrkiieaiekagy 61
                v ++hC +C+a ++ vL    g   + v+ +++t+ vtVe++++s + +r+  +++e+ag+
  CCE29711.1 17 VGNLHCPSCVAVIKNVLGQEFGDkvSWVSPNVVTSVVTVEHQDASaAFIRAMGNTLEEAGF 77
                889**************98866444****************99883444556666666665 PP

  == domain 2  score: 40.1 bits;  conditional E-value: 1.3e-13
         HMA   1 tvrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaes.tkl...rkiieaiekagyk 62 
                 tv++ gm+Ca+Ca+ +++ +++l  V+ ++v+l+t+++ V+ ++++  +     +++eai+++gy+
  CCE29711.1 214 TVSIGGMTCASCANGITEQIQKLAWVSRIVVNLVTNSASVDITTDQgQEQsraQELVEAIQDLGYD 279
                 7999**************************************8888555554456**********7 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 7.3e-05
         HMA   2 vrvsgmhCagCaakvekvLsel 23 
                 +r++g+ Ca+C  +++k+L +l
  CCE29711.1 303 IRIDGIFCAKCPERIRKTLTTL 324
                 79****************9775 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   4.9e-09   1.5e-05     184     253 ..     987    1058 ..     938    1060 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 4.9e-09
                   TT-SHHHHHHHHHHHCT..--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHH CS
  Hydrolase_3  184 kgvsKgtalkklakeln..isleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVak 253 
                   ++++K + l++ ++  n    +++v+ +GDg ND + L+ a++g+A+g++s+ +++ Ad+v +s +  +V+ 
   CCE29711.1  987 EKADKIKYLQAALHAGNgrTRRAMVAMVGDGINDSPALTIADVGIAIGSGSDVAISSADFVLASSSLAAVLT 1058
                   456777777777655441156788999************************************998888765 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.6e-07   0.00076      80     187 ..     932    1024 ..     888    1025 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.6e-07
         HAD   80 virpklldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevva 176 
                  v  p   +p+a+++++a  a+G +v+++Sg +   ++++++++g    + +       + +    e  p+ +++k++ l++ +  +g+g ++  +va
  CCE29711.1  932 VSDP--VRPEAVAVVEALVARGTQVWMLSGDNITTAKAVARLVG----IKET-----NVLA----EVLPSEKADKIKYLQA-ALHAGNGRTRRAMVA 1012
                  3333..469*******999*************************....5551.....3444....4555666667788888.777777777777777 PP

         HAD  177 y.GDspsDlpll 187 
                    GD+++D p+l
  CCE29711.1 1013 MvGDGINDSPAL 1024
                  77******9997 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.8e-05      0.14      12      66 ..     356     417 ..     354     445 .. 0.83
   2 ?   -3.1   1.3       3.2   9.6e+03      49      64 ..     740     756 ..     714     763 .. 0.52
   3 ?   -1.5   0.2         1   3.1e+03      45      75 ..    1107    1137 ..    1095    1139 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.8e-05
     DUF3040  12 eeiEraLaaeDPklaaal......rggaararrrslrrlavlavllfvaGllllvlG.vaaa 66 
                 ++i +a +a+DP l a++      +++++ + ++++r+l  +a+l+fv+++  +vlG v  +
  CCE29711.1 356 RQILKAIEATDPSLQASIhhpptlEERSKAIGAKHQRQLFRRAMLTFVLAIPTFVLGiVYMS 417
                 7889999***********999887444444666677999******************55554 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.2
     DUF3040  49 vllfvaGllllvlG.va 64 
                  l+++a+ +++v+G +a
  CCE29711.1 740 GLALAAPTAIFVGGgIA 756
                 22223344444444343 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1
     DUF3040   45 avlavllfva.GllllvlGvaaaavvlgvvGf 75  
                   v+a+l++++  + +++  +a++ v+++ vGf
  CCE29711.1 1107 PVWAALAMALsSISVVLSSLALR-VTVPWVGF 1137
                  34555555551555444447777.58888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 8242.84
//
Query:       CCE29712.1  [L=248]
Description: uncharacterized protein CPUR_03559 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1861.12
//
Query:       CCE29713.1  [L=585]
Description: uncharacterized protein CPUR_03560 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-67  227.0   0.9    1.6e-66  225.2   0.2    2.0  2  Amidase   Amidase
  ------ inclusion threshold ------
       0.15   11.4   0.2        6.9    6.0   0.1    2.3  2  GAIN      GPCR-Autoproteolysis INducing (GAIN) domain


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.2   0.2   1.7e-70   1.6e-66       2     288 ..      65     368 ..      64     422 .. 0.89
   2 ?    0.2   0.0     0.032   2.9e+02     416     450 ..     515     550 ..     473     551 .. 0.86

  Alignments for each domain:
  == domain 1  score: 225.2 bits;  conditional E-value: 1.7e-70
                 HHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--T.TSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE CS
     Amidase   2 lveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvk.gvpttaGskalenypaekDatvverLkkaGavilgkT 99 
                 l++ ++ r  ++++ +n +v  ++++a+a+Aa+ d++r++g+ ++ LhG+P++vKDni+++ +++ttaGs al +++ ++Da+vv+rL++aGav+lgk+
  CCE29713.1  65 LLHCYMMRTFQTQQYIN-SVLQINPDAYAIAAARDAERKAGRVRSRLHGIPFTVKDNIATRdNLETTAGSWALVGSRVSRDAHVVARLRSAGAVLLGKA 162
                 6778899999*******.9999***************************************889*********************************** PP

                 --SGGG-SSSSTT-TT.....---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEE CS
     Amidase 100 nmdefamgsstensvf.....gptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGpl 193
                 +++e+a   st++s       g+ r  ++++ +pGGSS+Gs++ v+a++v +++Gt+t GS+  PA  +++vG+KPt+g+ Sragv++ +  +d+vG l
  CCE29713.1 163 TLSEWADMRSTNYSEGysargGQCRSAYNLTVNPGGSSSGSGVGVGANVVAFSLGTETDGSVINPAMRNSIVGFKPTVGLTSRAGVIPESEHQDSVGTL 261
                 ******998888875558999****************************************************************************** PP

                 ESSHHHHHHHHHHHBS--TT-TTS----...........HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEE.EE-CC CS
     Amidase 194 arsvedlalllrvilgedpkdstssvip...........eesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevve.velps 280
                 ar+v+d++++l++i g+d++d  ++                 +++  ++k sl+g   G++++ +++ +dpe q+ ++++l+ +e+aG++vv   e+  
  CCE29713.1 262 ARTVRDAVYALDAIYGPDRHDNYTAAQEgrtpcrhgdggGGGYSQFLTTKASLRGATFGLPWKSFWVHADPEQQATLTSLLRLMEDAGATVVNnTEITG 360
                 *********************99998668888999988756677888999**************************************88876144666 PP

                 GGGHHHHH CS
     Amidase 281 leealsly 288
                  e ++s  
  CCE29713.1 361 YETIVSHG 368
                 66655554 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.032
                 HHTT--EEEEECCCC.T.TECEEEEEEESTT-HHHH CS
     Amidase 416 nlaglpalsvpagks.edglPvGvqvigkafqeetl 450
                   ag+p +++pag +  +g+  G+ +   a++e++l
  CCE29713.1 515 AQAGYPVITIPAGIEtVSGMGFGLAILQTAWAEAEL 550
                 458999999999988788999999999999999987 PP

>> GAIN  GPCR-Autoproteolysis INducing (GAIN) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0    0.0061        55      40      76 ..     143     175 ..     116     181 .. 0.81
   2 ?    6.0   0.1   0.00077       6.9      68     100 ..     327     361 ..     323     367 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0061
        GAIN  40 qdatlsneflenlvktvsnLLdpenresWedlqqseq 76 
                 +da    + +  l  ++  LL + ++++W d+ +++ 
  CCE29713.1 143 RDA----HVVARLRSAGAVLLGKATLSEWADMRSTNY 175
                 444....788888899****************99875 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.00077
        GAIN  68 WedlqqseqgtaatkLlrtleeyalllaqnmk...y 100
                 W ++  ++ + ++t+Llr++e++  ++ +n +   y
  CCE29713.1 327 WVHADPEQ-QATLTSLLRLMEDAGATVVNNTEitgY 361
                 66666655.57888***************9985444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4272.56
//
Query:       CCE29714.1  [L=509]
Description: related to aldehyde dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-150  502.0   0.1   1.5e-150  501.7   0.1    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.074   12.7   0.0       0.25   11.0   0.0    1.9  1  PYNP_C    Pyrimidine nucleoside phosphorylase C-terminal doma


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  501.7   0.1  1.7e-154  1.5e-150       4     461 ..      21     492 ..      18     493 .. 0.96

  Alignments for each domain:
  == domain 1  score: 501.7 bits;  conditional E-value: 1.7e-154
                 -SSSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHH CS
      Aldedh   4 sesetievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryya 101
                 s+s+t+++i+Patg+++a+v   t++++d+avaaA++af++w+++pa+eRa++L +aa+ll+er++ la +etl+tGk +ae+++ +v   ++vl+yya
  CCE29714.1  21 STSTTFASIDPATGKPLATVYTTTRQQLDDAVAAAQAAFPRWSQTPAPERAAVLLRAAALLRERNDALALTETLDTGKAWAETSTvDVVTGVEVLEYYA 119
                 45577********************************************************************************************** PP

                 HHHHH.HSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHH CS
      Aldedh 102 elaek.legevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgea 199
                  l++  l g+++  ++++ +l+ +ePlGv++ I +WN+P+ +a+wk a++laaGN++v+KP+e tpl    la+++ eaglP+gv+nvv g+g+ vg+ 
  CCE29714.1 120 HLISArLPGQHTRLRQDAYILTSHEPLGVCAGIGAWNYPIQIALWKSAACLAAGNCMVYKPSEVTPLHGNTLAQIYIEAGLPAGVFNVVYGDGQAVGAP 218
                 **9988999**99999*********************************************************************************** PP

                 HHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHH.HT-- CS
      Aldedh 200 lvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaa.kklk 297
                 lv+hp ++kvsftG +++g ++a++a+k lk vt+ElGGk+p+++l+daD+d+ave ++++ f+++GQvC++++r++v++ +  ++ + lv++  + ++
  CCE29714.1 219 LVAHPAIAKVSFTGQVSTGSRVASEASKGLKSVTMELGGKSPVVILPDADVDEAVEIAMAANFFSTGQVCTNGTRVFVPDTLLGAVEHGLVQRCrEGIR 317
                 **********************************************************************************************5567* PP

                 BS-TTSTT-SB---SSHHHHHHHHHHHHHHHH.TTSEEEE-TT...E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESS........HH CS
      Aldedh 298 vgdpldedtdvGPliseaqlekvekyveeake.egaklllGge...reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkd........ee 384
                 +g p+d++t++GPl+s+a+ +kv+ y+ ++ke +gak+l++g+   ++e+    g++v+P++++n+t+dmr+a+eE+FGPV++++++++         +
  CCE29714.1 318 MGLPRDPNTNFGPLVSAAHCDKVKMYIRHGKEvDGAKVLYDGSldaQRERPTPGGFWVSPVIFTNCTDDMRVAREEVFGPVMCLLPYRTqgrlqdewMA 416
                 ******************************9867********9986556667778*********************************86677666678 PP

                 HHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEE CS
      Aldedh 385 eaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevkt 461
                 ++++ aNdt  GLaagv+++++  a++v+++l+aG  +iN++ ++ ae+ p+gG+k+Sg+G e+g+egl++y++vk+
  CCE29714.1 417 DVVRRANDTALGLAAGVVSSNVGLAQEVVRQLDAGITWINTWGESPAEM-PVGGWKMSGIGLENGHEGLQAYMRVKS 492
                 99****************************************8888888.*************************97 PP

>> PYNP_C  Pyrimidine nucleoside phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.8e-05      0.25      46      71 ..      33      58 ..      32      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.8e-05
                TTSEEEEEEESSSCHHHHHHHHHHHH CS
      PYNP_C 46 kGeplatiYankeekleeavkklkka 71
                +G+plat+Y+ ++++l++av+++++a
  CCE29714.1 33 TGKPLATVYTTTRQQLDDAVAAAQAA 58
                69********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3763.77
//
Query:       CCE29715.1  [L=1239]
Description: uncharacterized protein CPUR_03562 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-29  104.0   0.1    2.2e-29  103.0   0.1    1.4  1  Helitron_like_N  Helitron helicase-like domain at N-terminus
    1.4e-24   87.0   0.0    5.9e-21   75.0   0.0    2.3  2  PIF1             PIF1-like helicase
    5.6e-12   45.8   0.0    1.3e-11   44.6   0.0    1.5  1  AAA_30           AAA domain
      2e-05   24.9   0.0      4e-05   24.0   0.0    1.5  1  AAA_19           AAA domain
  ------ inclusion threshold ------
       0.05   13.9   0.9       0.13   12.6   0.9    1.6  1  RPAP2_Rtr1       Rtr1/RPAP2 family
       0.11   12.7   0.0       0.84    9.9   0.0    2.3  2  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.1   7.3e-33   2.2e-29      50     188 ..     275     425 ..     257     427 .. 0.87

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 7.3e-33
  Helitron_like_N  50 lraesltgeeLkealeeetedeelkllgklvilpssvpgsprymqekrqdlmaivrelgkPdlFiTltcndk.wpeikeel.....rkkkkaqt 137
                      ++++++t++e++ea+e+ ++ +++ ll+++v+ + +++g+++y+  +r++l a+vr+lg+P+lF+T +++d  wp++ +       +k     +
       CCE29715.1 275 TESRTITADEVREAFEDPESGQARHLLNSIVRQSTKIKGTRAYWGYQRHELEAYVRALGTPSLFMTASAADLhWPSLLRYSddydaWK-----N 363
                      256789999********955555********************************************************997666533.....2 PP

  Helitron_like_N 138 .............aadrpdivarvFhrkleaflkdllkegvfGkvsayvytvEfQkRGlpHaHl 188
                                   ++++p+++a +F+++l+ f++ +lke++  + ++y+ ++EfQ+RG+ HaH 
       CCE29715.1 364 adsterlkisrkfLRENPHLAAEHFQQRLDSFFRIVLKEKF--RYTDYWIRYEFQGRGSVHAHW 425
                      3334578999999*************************999..********************6 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0     2e-24   5.9e-21       2     220 ..     902    1132 ..     901    1144 .. 0.82
   2 !    9.4   0.0   0.00017      0.52     331     361 ..    1208    1238 ..    1195    1239 .] 0.88

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 2e-24
                  --HHHHHHHHHH............HCTS-EEEEESTTSSCHHHHHHHHHHCHC..........TCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSS CS
        PIF1    2 LneeQkkvfdaiie....avln..ekgklfFvtGsgGtgKtflwkallkklrs..........egkivlavAssGvAalllegGrtahsrfkiplek 82  
                  Ln eQ+  f++++e    a+      +  + v+G +GtgK++  + +++ l++          +++ v+ +A +G Aa+ + +G t h+ f++p++ 
  CCE29715.1  902 LNPEQRLLFETVVEhygrAIDGlsPDPLRINVDGRAGTGKSYTIQLVSSRLETmqrsrfptspRRSPVARIAPTGAAANGI-QGYTDHAYFGLPVQR 997 
                  8899999999998833222222224566899***********9998888876544446666667889**************.9************98 PP

                  S-H.HHHHHHTSCCCHHHHHC-SEEEEECGGGSBHHHHHHHHHHHHHHCT-...-SCCCC-EEEEE--TTS-----SSS..SS---BGC...CSCHH CS
        PIF1   83 dee.stckikrgsklaellkktsliiwDEapmverecfealdrtlrdilkekeidkpFGGktvvlgGDfrQilPviekg..sraeivaasikeSklW 176 
                   e+ s +     s l+++l+ +s +i+DE +m++   +  +d+ lr+   e++ d pF G  ++++GDf Q++Pv+  +  +     + +i   +++
  CCE29715.1  998 FETlSPLGPDGVSALRRRLEGVSYLIVDEKSMISLVKLAWIDQRLRQAYPESN-DDPFAGFSIIVAGDFYQLPPVSGMAlfEARPVTTVAIAGKNAY 1093
                  6651667889999*************************************999.*********************9887332333445569999999 PP

                  HH--.EEEE-S-STTTT...........HHHHHHHHHHHCT---C CS
        PIF1  177 kevk.vlkLtknmRllsesldetekkelkeFskwllkigdGkine 220 
                  k ++ +++L   +R+++++           F  +l ++++G+ + 
  CCE29715.1 1094 KALSvTIRLVTLVRQSDTD------ASSIAFRRVLENMRQGNPDL 1132
                  997779********99974......34457999999999998665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00017
                  SCEEE-TT-EEEE-S--CTT-SC-TCEEEEE CS
        PIF1  331 hvLkLkvGvpvmllrNldqsaGLcNGtrliv 361 
                   +L L +G+ vml  N+ ++aGL+N +r+ v
  CCE29715.1 1208 AELLLSIGARVMLTTNIWTEAGLVNRSRGYV 1238
                  56889*********************99876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   4.3e-15   1.3e-11      23     176 ..     933    1133 ..     919    1149 .. 0.79

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 4.3e-15
      AAA_30   23 ltGpAGtGKttalkalreaweaag..........grviglAptgkaAkvLa.....eelgieastiakllkrlk......grarlepgtllivDEag 98  
                  + G+AGtGK+++++ +   +e+ +           +v+ +Aptg+aA+ ++     + +g++ ++ + l   l+       r rle  + livDE +
  CCE29715.1  933 VDGRAGTGKSYTIQLVSSRLETMQrsrfptsprrSPVARIAPTGAAANGIQgytdhAYFGLPVQRFETLS-PLGpdgvsaLRRRLEGVSYLIVDEKS 1028
                  78**************88888886689******99****************4433334455666666555.44479899744677777********* PP

      AAA_30   99 mvdtkqlaallkaaeka..........gakvilvGDerQlasVeaGgvlrdlvea...........agigtaeLtevvRqkes.....eeraaalal 169 
                  m++  +la + +++++a          g ++i++GD  Ql++V+  ++++    +           a   t++L ++vRq+++     ++r++ +++
  CCE29715.1 1029 MISLVKLAWIDQRLRQAypesnddpfaGFSIIVAGDFYQLPPVSGMALFEARPVTtvaiagknaykALSVTIRLVTLVRQSDTdassiAFRRVLENM 1125
                  ******9999999999888899999999***************988888764322455666766655668899999999976435666888999999 PP

      AAA_30  170 regdae.e 176 
                  r+g+++ +
  CCE29715.1 1126 RQGNPDlT 1133
                  99998744 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.3e-08     4e-05      15     144 ..     933    1071 ..     919    1073 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.3e-08
      AAA_19   15 vtaGpGtGKTrvlkhivallvelggvkp......eeillvaftgrAakelrerlaa..lgaeatTiHrlalldfddlltealelleeaeeekklqee 103 
                  v + +GtGK+++++ + + l+ +++          +++ +a+tg Aa+ ++  ++   +g++ + +  l+ l+ d+       +l+     + l e+
  CCE29715.1  933 VDGRAGTGKSYTIQLVSSRLETMQRSRFptsprrSPVARIAPTGAAANGIQGYTDHayFGLPVQRFETLSPLGPDGVS-----ALR-----RRL-EG 1018
                  6788**********9999998888766578899899***************988541156778888888777777766.....444.....356.55 PP

      AAA_19  104 e.llivDEfqdvdelqyrLlkallgek.kk..........lllvGDpdQliyv 144 
                    +livDE ++++ +  + +++ l ++  +          +++ GD  Ql++v
  CCE29715.1 1019 VsYLIVDEKSMISLVKLAWIDQRLRQAyPEsnddpfagfsIIVAGDFYQLPPV 1071
                  55**********9776655555443332124456999*99999******9987 PP

>> RPAP2_Rtr1  Rtr1/RPAP2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.9   4.2e-05      0.13      12      61 ..     490     548 ..     484     558 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.2e-05
                 HHHHHCTT--SSTT-....-S--SS-----------........--TTGGG..GT-SSH CS
  RPAP2_Rtr1  12 veERniekkCGyplC....nnsleedkrqkekyris...rkakkvvereel..ekfCSk 61 
                 +++R  ++kC+yp+C    ++++++d++ + ++++     ++ +v +r+     +fC++
  CCE29715.1 490 IVNRVQKHKCSYPGClrrrTRRNPQDNKMYCRFHFPrdiIHTPEVSKRRNSryPMFCAE 548
                 568999*********55553444444467777777655533333333332234788876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.63   1.9e+03      17      66 ..     266     310 ..     262     334 .. 0.55
   2 ?    9.9   0.0   0.00028      0.84      10     112 ..     933    1038 ..     930    1064 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.63
      AAA_22  17 GKTtllrrlleqldeeakaeeerpevv.fvtlpsstsskdllrellralgl 66 
                 G ++++rr++e+ ++        +ev   ++ p+s+  + ll+ ++r+ + 
  CCE29715.1 266 GSSFVARRFTESRTIT------ADEVReAFEDPESGQARHLLNSIVRQSTK 310
                 5566666666665432......22222455555555566666655555553 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00028
      AAA_22   10 vtGesGtGKTtllrrlleqldeeakaee....erpevvfvtlpsst..sskdllrellralglelkaerlsseellealeqalrarav.ielliiDE 99  
                  v G +GtGK+++++ + ++l+  +  +     +r++v+++ +++    + +    +    l +++ +   +++ l      alr+r   ++ li+DE
  CCE29715.1  933 VDGRAGTGKSYTIQLVSSRLETMQRSRFptspRRSPVARIAPTGAAanGIQGYTDHAYFGLPVQRFE---TLSPLGPDGVSALRRRLEgVSYLIVDE 1026
                  78******************76655555999999999999888887777777777777777777777...777777666666666666677777777 PP

      AAA_22  100 aqhlrseealeeL 112 
                     + s   l ++
  CCE29715.1 1027 KSMI-SLVKLAWI 1038
                  6666.55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.24s 00:00:01.04 Elapsed: 00:00:00.41
# Mc/sec: 9098.06
//
Query:       CCE29716.1  [L=1524]
Description: probable ABC1 transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-78  260.6  63.7    4.2e-41  140.7  19.2    3.5  4  ABC2_membrane    ABC-2 type transporter
    5.2e-38  130.7   0.0    9.3e-18   65.1   0.0    2.5  2  ABC_tran         ABC transporter
      5e-32  109.7   3.1    3.7e-28   97.2   0.3    3.1  2  PDR_CDR          CDR ABC transporter
    2.5e-18   66.5   0.0      7e-18   65.0   0.0    1.8  1  ABC_trans_N      ABC-transporter N-terminal
    7.2e-07   29.0   0.1    0.00029   20.5   0.0    2.4  2  AAA_25           AAA domain
    9.8e-06   26.1   0.3     0.0009   19.7   0.0    2.4  2  AAA_16           AAA ATPase domain
      1e-05   25.2   0.3     0.0025   17.5   0.1    2.7  2  AAA_29           P-loop containing region of AAA domain
    1.4e-05   25.3   0.1     0.0013   18.9   0.0    2.6  2  AAA_33           AAA domain
    4.2e-05   23.5   0.0     0.0062   16.5   0.0    2.3  2  RsgA_GTPase      RsgA GTPase
    0.00019   21.9   0.7     0.0023   18.5   0.0    2.6  2  AAA_18           AAA domain
    0.00071   19.1   0.0      0.039   13.4   0.0    3.1  2  SMC_N            RecF/RecN/SMC N terminal domain
    0.00077   18.7  20.8    0.00077   18.7  20.8    4.3  3  ABC2_membrane_3  ABC-2 family transporter protein
    0.00093   18.8   1.0      0.044   13.4   0.1    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0031   17.4   0.0       0.25   11.1   0.0    2.6  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0058   16.7   0.1        3.3    7.8   0.0    2.5  2  MMR_HSR1         50S ribosome-binding GTPase
     0.0089   16.3   0.3       0.55   10.5   0.0    2.7  2  AAA_22           AAA domain
     0.0094   15.9   2.4        1.3    8.9   0.4    2.6  2  NACHT            NACHT domain
  ------ inclusion threshold ------
      0.015   15.8   0.0      0.088   13.3   0.0    2.0  2  AAA_23           AAA domain
      0.021   15.3   0.6        4.5    7.7   0.0    3.1  2  AAA              ATPase family associated with various cellul
      0.026   14.2   0.0       0.89    9.2   0.1    2.4  2  AAA_30           AAA domain
      0.033   14.6   0.7       0.68   10.4   0.0    2.7  2  AAA_17           AAA domain
       0.74   10.0   3.3       0.43   10.8   0.3    2.1  2  AAA_28           AAA domain


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7  19.2   5.1e-44   4.2e-41       2     210 .]     515     724 ..     514     724 .. 0.97
   2 ?   -1.9   0.3       2.3   1.9e+03      53      67 ..     782     796 ..     764     811 .. 0.51
   3 !  134.4  25.2   4.2e-42   3.4e-39       2     209 ..    1189    1398 ..    1188    1399 .. 0.97
   4 ?   -0.9   0.2       1.1   9.1e+02      40      69 ..    1464    1488 ..    1456    1499 .. 0.52

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 5.1e-44
  ABC2_membrane   2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsay 96 
                    q+k++++r ++++w + + + ++++i+++ ++l++g++f++++  + +++ r+ +lf+++l++a+++++++ +    +r+++e++ ++ +y++sa 
     CCE29716.1 515 QVKLCTRRAYQRIWNNITAT-ATQVISIIAISLIIGSIFFGTPdATVSFYGRASVLFMAILMNALTSISEI-TGLYEQRPIVEKHASYAFYRPSAE 608
                    99******************.*********************9667777799************9999999.************************ PP

  ABC2_membrane  97 vlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm.pkwl 189
                    +++ +++++pv ++ a++f ++ yfl  l+++   ffl++l++++++l++s++++ ++a ++++ +a+ l+++++l l++++Gf  p++ m p w+
     CCE29716.1 609 AAGGIVADIPVKFVTAVAFNIVLYFLSELRRQpgPFFLYFLITYMSTLVMSAVFRTMAAATKTVSQAMALSGVLVLALVIYTGFTLPVPEMhP-WF 703
                    ********************************9888*******************************************************77.** PP

  ABC2_membrane 190 qwiaylnPltyavealrsnlf 210
                     wi ++nP++ya+e+l++n+f
     CCE29716.1 704 SWIRWINPVYYAFEILVANEF 724
                    *******************97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.3
  ABC2_membrane  53 pgllffsvlflafsa 67 
                      l++f+++f+a+++
     CCE29716.1 782 GFLVAFLLFFWATYF 796
                    223333333333222 PP

  == domain 3  score: 134.4 bits;  conditional E-value: 4.2e-42
  ABC2_membrane    2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvl.erelvsplysls 94  
                     q+++++ r f+q+wr p+++ +++l+  ++ +l++g+ f++++++  g + + +  f++++++ +++++++p+f+++r+++ +re++s+ ys+ 
     CCE29716.1 1189 QLQVVTHRIFQQYWRMPAYI-FAKLALGIFAGLFIGFTFYDAKSTMAGTQAVIFNTFMITTIFSLIVQQIQPLFVTQRSLYeVRERPSKAYSWQ 1281
                     89******************.99******************9999999999******************************************* PP

  ABC2_membrane   95 ayvlakvlvelpvsllqalifllivyfl.vgldls.rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmp 186 
                     ++++a+++ve+p++++ ++++++++y++ vg++ s r +l+l+l++ ++++ass++++  a +p+ ++a+ ++ ++ l+ +++sG++ + +++p
     CCE29716.1 1282 VFMIANIVVEIPYQIVTGVLIWAVSYYPvVGIQSSdRQGLVLVLVIQLFIYASSFAIMCQAAMPDPHTAGSVVIVLSLMSTVFSGVLQTAKALP 1375
                     ***********************8888626******99******************************************************** PP

  ABC2_membrane  187 kwlqwiaylnPltyavealrsnl 209 
                     ++++++++++P+ty + ++++++
     CCE29716.1 1376 GFWIFMYRVSPFTYWIGGIVGTE 1398
                     *****************999876 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.1
  ABC2_membrane   40 fgnlgnsedglnrpgllffsvlflafsalt 69  
                     f+     +d++ + gl+   +lf+ f+a+ 
     CCE29716.1 1464 FW-----DDRVRNFGLMWAYILFNIFVAVL 1488
                     44.....34444455555555555544433 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   1.1e-20   9.3e-18       8     136 ..     193     346 ..     186     347 .. 0.89
   2 !   63.3   0.0   4.1e-20   3.4e-17       1     137 []     888    1039 ..     888    1039 .. 0.92

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 1.1e-20
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..................HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..................esdee 84 
                 l++ge++ ++G+ G+G+StLlk+++g+l+     ++ +i ++g + k+  +++++ e+ + ++ +++fp+ltv+e+                       
  CCE29716.1 193 LNPGELLIVLGRPGSGCSTLLKTICGELHGlelgEQSKIDYNGISQKR-MIKEFKGEMIYNQEVDKHFPHLTVGETlefaasvrtpehriqhmsR---S 287
                 89**************************99998899999999888777.999********9999***************9999999888876540...2 PP

                 ......HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ......xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 ......iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                       ++ +++ +gl+++ +t+v+++  + +SgG+++rv++a++++  ++l  +D+ t
  CCE29716.1 288 eycqyiAKVVMAVFGLSHTYNTKVGNDFvRGVSGGERKRVSIAEMMVAGSPLTAWDNST 346
                 456666999***************99999***************************987 PP

  == domain 2  score: 63.3 bits;  conditional E-value: 4.1e-20
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................ 79  
                  l++vs  +++g+++a++G +GaGK+tLl +la+ ++     G++l++gk+l+     s++++ g+++q++ + ++ tvre+                
  CCE29716.1  888 LDHVSGWVRPGTLTALMGVSGAGKTTLLDALAQRTTMgvITGDMLVNGKPLDP----SFQRNTGYVQQQDLHLETATVRESlrfsamlrqpksvskk 980 
                  6889999***************************9988899999*******99....************99999999********999999886433 PP

                  HHHTC...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                  xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran   80 esdee...iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137 
                  e   +   +e+++  l+++++++ vv+  ++ L   q++ + +   l+ kpklll lDEpt+
  CCE29716.1  981 E---KyafVEEVIGMLKMEDFANAVVGVPGQGLNVEQRKLLTIGVELAAKPKLLLfLDEPTS 1039
                  3...2667********************************************87649***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.3   4.6e-31   3.7e-28       6      90 ..     737     821 ..     734     823 .. 0.94
   2 !   11.4   0.2   0.00027      0.22      43      81 ..    1465    1503 ..    1450    1514 .. 0.77

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 4.6e-31
     PDR_CDR   6 gyenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevlvfkrgkapk 90 
                  y+    ++ vCav+GavpGq +VsGd+Y+++s++ys+sh+wrnfg l+afl+ff a+y++++el+sa++s +e+lvf+rg+ p+
  CCE29716.1 737 PYTPNIGTSWVCAVAGAVPGQYTVSGDAYIATSYEYSYSHVWRNFGFLVAFLLFFWATYFVTVELNSATSSAAEALVFRRGHVPA 821
                 5665567899************************************************************************986 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00027
     PDR_CDR   43 sshlwrnfgiliaflifflalyllatelisaekskgevl 81  
                  ++++ rnfg ++a+++f +++ +l+  l++ ++ k   l
  CCE29716.1 1465 WDDRVRNFGLMWAYILFNIFVAVLVYYLFRVKQWKKGSL 1503
                  66788****************999999988877665544 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   8.6e-21     7e-18       1      81 []      74     164 ..      74     164 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 8.6e-21
  ABC_trans_N   1 eLartlsrqssssssssss..........e..sssedeeeedseFdlekwlknlreridrdgikprklGVvFknLtVeGvgsgadyqpTvgna 81 
                  eL r+++ ++++ s+s+++          +  ++  ++e+ d  Fdlekw++++++++ + g + r++GV+++nL+V+G+gs++++q Tvg+a
   CCE29716.1  74 ELVRIATALTRRFSNSADQpspgglsgsiDenDPAVNPEHKD--FDLEKWVRQFLDQMMAGGLEERSMGVSYRNLNVFGSGSALQLQNTVGSA 164
                  567777777556555555566677765441467777777777..**********************************************986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.011       8.8      17      50 ..     177     213 ..     166     224 .. 0.75
   2 !   20.5   0.0   3.6e-07   0.00029      14      61 ..     879     926 ..     868     982 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.011
      AAA_25  17 apppprrwlvk...gllpagelallaGapgtGKttla 50 
                  + +pr+++++   g+l  gel ++ G+pg+G +tl+
  CCE29716.1 177 FNKKPRKQILHsfdGFLNPGELLIVLGRPGSGCSTLL 213
                 444555555543338*******************997 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 3.6e-07
      AAA_25  14 dlaapppprrwlvkgllpagelallaGapgtGKttlaldlalavatGk 61 
                 +++  p+++ + v g+++ g+l++l+G +g+GKttl+  la  ++ G 
  CCE29716.1 879 EIKGGPRRLLDHVSGWVRPGTLTALMGVSGAGKTTLLDALAQRTTMGV 926
                 57778889999999***************************9998554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.083        68      22      45 ..     195     217 ..     180     229 .. 0.77
   2 !   19.7   0.0   1.1e-06    0.0009      11     145 ..     886    1038 ..     884    1066 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.083
      AAA_16  22 grpelvllsGesGvGKsslvrell 45 
                 ++ el+++ G +G+G s+l++++ 
  CCE29716.1 195 PG-ELLIVLGRPGSGCSTLLKTIC 217
                 33.89***************9875 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.1e-06
      AAA_16   11 qLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala. 106 
                  +Ll+ ++ + +++  l+ l G sG GK++l+++l+++     + +++g+   +  + p+++  q   + ++++q + ++e+a +++  + + + l+ 
  CCE29716.1  886 RLLDHVSGWVRPG-TLTALMGVSGAGKTTLLDALAQRT---TMGVITGDMLVN--GKPLDPSFQRN-T-GYVQQQDLHLETATVRESLR-FSAMLRq 973 
                  6677777777666.6999*****************733...366777777777..66666655555.3.45555555533322222222.1111222 PP

      AAA_16  107 ...........................avpelagaeasrllellkrllallsrderplvlvlDdlq 145 
                                             av  ++g++ +   ++l  + + l+ + + l+l+lD+  
  CCE29716.1  974 pksvskkekyafveevigmlkmedfanAVVGVPGQGLNVEQRKLLTIGVELAAKPK-LLLFLDEPT 1038
                  33444455555666666688888888888888888888888888888855554244.999999755 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0      0.03        24      22      42 ..     196     216 ..     187     240 .. 0.71
   2 !   17.5   0.1   3.1e-06    0.0025      23      43 ..     898     919 ..     889     922 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.03
      AAA_29  22 kgatlltGpsGsGKSTllDAi 42 
                  +  ++ G+ GsG STll  i
  CCE29716.1 196 GELLIVLGRPGSGCSTLLKTI 216
                 4467889**********9665 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3.1e-06
      AAA_29  23 g.atlltGpsGsGKSTllDAiq 43 
                 g  t l+G sG+GK+TllDA++
  CCE29716.1 898 GtLTALMGVSGAGKTTLLDALA 919
                 44799***************86 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.077        63       1      27 [.     198     224 ..     198     284 .. 0.78
   2 !   18.9   0.0   1.7e-06    0.0013       2      78 ..     901     974 ..     900    1004 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.077
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavl 27 
                 l+++ G pGsG stl++ ++ +l++  
  CCE29716.1 198 LLIVLGRPGSGCSTLLKTICGELHGLE 224
                 68999**************99998443 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.7e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildat 78 
                 + l G++G+GK+tl++ l++++++ +++ d l +      ++s ++ t   ++   +l e+a+ + s +++++l+++
  CCE29716.1 901 TALMGVSGAGKTTLLDALAQRTTMGVITGDMLVNGKPL--DPSFQRNTGYVQQQDLHL-ETATVRESLRFSAMLRQP 974
                 5689**************************98875442..222222233333333344.777788888888888877 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.037        30      97     131 ..     193     229 ..     172     243 .. 0.74
   2 !   16.5   0.0   7.6e-06    0.0062      90     125 ..     888     924 ..     865     964 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.037
                  CTT.SEEEEECSTTSSHHHHHHHHCTT-.----S--- CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpel.elktgevs 131
                  l+  ++ +++G  G G StL++++ +el  l+ ge s
   CCE29716.1 193 LNPgELLIVLGRPGSGCSTLLKTICGELhGLELGEQS 229
                  55558899*****************986245555555 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 7.6e-06
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                  l++++ +++   +++l+G SG+GK+tL++al++++++
   CCE29716.1 888 LDHVSGWVRPgTLTALMGVSGAGKTTLLDALAQRTTM 924
                  66777777776899*****************998655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.88   7.1e+02       2      19 ..     200     217 ..     199     263 .. 0.71
   2 !   18.5   0.0   2.8e-06    0.0023       3      55 ..     903     953 ..     902    1003 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.88
      AAA_18   2 lltGtpGvGKttlakeLs 19 
                 ++ G pG+G +tl k + 
  CCE29716.1 200 IVLGRPGSGCSTLLKTIC 217
                 789**********99883 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 2.8e-06
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrlded 55 
                 l+G++G+GKttl ++L++r+ +gv+ +d++ ++ +l++ ++   +   + ++d
  CCE29716.1 903 LMGVSGAGKTTLLDALAQRTTMGVITGDMLVNGKPLDPSFQR--NTGYVQQQD 953
                 89*****************999**************999999..444444444 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.55   4.4e+02     118     181 ..     236     359 ..     192     370 .. 0.49
   2 !   13.4   0.0   4.8e-05     0.039      26     201 ..     900    1071 ..     889    1087 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.55
                 E-HHHHHHHHHCTT-STT................................................................CS-HHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx................................................................xxxxxxxxxxxxxxxxx RF
       SMC_N 118 vtkkevsellesagiske................................................................lLSgGektLvalaLlfA 152
                 +++k + + ++ ++i+ +                                                                  SgGe++ v++a +  
  CCE29716.1 236 ISQKRMIKEFKGEMIYNQevdkhfphltvgetlefaasvrtpehriqhmsrseycqyiakvvmavfglshtyntkvgndfvrGVSGGERKRVSIAEM-- 332
                 2333333333333333333333333333333344444444444444444444444444444444444444455555555554567777776665543.. PP

                 HHCCS--SEEEECTTTTTS-HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 153 iqkvkpaplyllDeidaaLDeknvkkvae 181
                   +v  +pl   D+    LD +   k+++
  CCE29716.1 333 --MVAGSPLTAWDNSTRGLDSATALKFVS 359
                 ..556666666666666666666555555 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.8e-05
                  EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--..BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk..skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk 120 
                  +ta++G  G+GK+ lldA+       + +++   + + l++    + + + + ++v    +++d +l++ + + s++ +++  +  ++  ++k +  
  CCE29716.1  900 LTALMGVSGAGKTTLLDAL----A--QRTTMGVITGDMLVNGkpLDPSFQRNTGYV----QQQDLHLETATVRESLRFSAMLRQPKSVSKKEKYAFV 986 
                  6899999999999999999....3..344677777777777633223333334444....4445444444444445555555555555555555666 PP

                  HHHHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHH CS
                  xxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  121 kevsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreem 201 
                  +ev  +l+++++           L   +++L+ + + +A   +kp+ l +lDe  + LD +   +++ +l++  ++ Q i  ++++  
  CCE29716.1  987 EEVIGMLKMEDFANAvvgvpgqGLNVEQRKLLTIGVELA---AKPKLLLFLDEPTSGLDSQSSWAICAFLRKLADSGQAILCTIHQPS 1071
                  666666666666655444444478888999999999877...68**************************************998865 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7  20.8   9.5e-07   0.00077     184     341 ..     588     793 ..     517     796 .. 0.73
   2 ?   -3.2   7.8       4.2   3.5e+03     249     290 ..    1212    1254 ..    1198    1266 .. 0.59
   3 ?   -1.8  21.6       1.6   1.3e+03     160     309 ..    1242    1390 ..    1231    1397 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 9.5e-07
  ABC2_membrane_3 184 veEkesrikelqlvsgvsplqywlskilgdflvyllqlllilllafglgipfg..nlglllllfllfglayialgyllsslfknsetaqilifi 275
                       e++    k+  +    +p++   + i++d  v +++++ + ++++   ++    + g ++l+fl+ +++++++++++ ++   ++t+++++ +
       CCE29716.1 588 YEQRPIVEKHASYAF-YRPSAEAAGGIVADIPVKFVTAVAFNIVLYF--LSELrrQPGPFFLYFLITYMSTLVMSAVFRTMAAATKTVSQAMAL 678
                      555555566666666.7777777888888888888888888665444..44445999************************9988888888777 PP

  ABC2_membrane_3 276 vil..llsgffgglfp.ledlpsalkwifsiiPffapglgllrli..tgdplwe........................................ 324
                        +  l++++++g+ + ++ ++ +++wi +i+P ++ ++ l+     +     +                                        
       CCE29716.1 679 SGVlvLALVIYTGFTLpVPEMHPWFSWIRWINPVYYAFEILVANEfhNR----Dftcsdiippytpnigtswvcavagavpgqytvsgdayiat 768
                      77722455555555436999*****************999965533322....25577788899999999999999999999999999****** PP

  ABC2_membrane_3 325 ........illsliilalfavvyll 341
                              +++++++l++f +++++
       CCE29716.1 769 syeysyshVWRNFGFLVAFLLFFWA 793
                      ***************9888877754 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.2
  ABC2_membrane_3  249 glayialgyllsslfknsetaqilifivil.llsgffgglfpl 290 
                       + + i+ g+++++ f +++++++ + +vi+ ++++  +++ ++
       CCE29716.1 1212 LALGIFAGLFIGFTFYDAKSTMAGTQAVIFnTFMITTIFSLIV 1254
                       4555666777777777776666665555554333333333333 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.6
  ABC2_membrane_3  160 asflvg.liliilifitasfiavsi...veEkesrikelqlvsgvsplqywlskilgdflvyllqll.lill.l..afglgipfg.nlglll 242 
                       + f+++ ++ +i+  i ++f+++     v+E+ s++   q+ +        +++i+      +++ + ++ + +  ++g  i+ +   gl+l
       CCE29716.1 1242 NTFMITtIFSLIVQQIQPLFVTQRSlyeVRERPSKAYSWQVFM--------IANIVVEIPYQIVTGVlIWAVsYypVVG--IQSSdRQGLVL 1323
                       4444444444444333344444433456777777777777555........6666655555555543033333245899..88886778888 PP

  ABC2_membrane_3  243 llfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffap 309 
                       +l++  ++ +++++ ++ +++ ++ ta +++++++l+  +f+g+l + ++lp+++    ++ Pf++ 
       CCE29716.1 1324 VLVIQLFIYASSFAIMCQAAMPDPHTAGSVVIVLSLMSTVFSGVLQTAKALPGFWIFMYRVSPFTYW 1390
                       888888888999*****************999999988888888899*******9999999999875 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.042        34       3      28 ..     199     224 ..     197     240 .. 0.85
   2 !   13.4   0.1   5.3e-05     0.044       3      37 ..     901     932 ..     899     947 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.042
                 EEEEESTTCCHHHHHHHHHCT--SS- CS
        cobW   3 tvltGflGsGKTtLlnhllenraglk 28 
                 +++ G +GsG +tLl++++ + +gl+
  CCE29716.1 199 LIVLGRPGSGCSTLLKTICGELHGLE 224
                 6899**************97666655 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 5.3e-05
                 EEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-S CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklavivNefg 37 
                 t l G  G+GKTtLl +l ++     + vi++++ 
  CCE29716.1 901 TALMGVSGAGKTTLLDALAQR---TTMGVITGDML 932
                 7899**************987...8999***9986 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0    0.0003      0.25       1      23 [.     900     920 ..     900     985 .. 0.79
   2 ?    3.5   0.0     0.062        51     252     273 ..    1024    1044 ..    1013    1073 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
      AAA_21   1 lnvliGpNgsGKSnLLdaldlla 23 
                 l++l G  g+GK++LLdal   +
  CCE29716.1 900 LTALMGVSGAGKTTLLDALA--Q 920
                 6999***************3..3 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.062
      AAA_21  252 lralkkgsllliDEpEngLHPk 273 
                  l+a +k  ll++DEp +gL+ +
  CCE29716.1 1024 LAAKPK-LLLFLDEPTSGLDSQ 1044
                  445556.8***********974 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.013        10       3      22 ..     200     219 ..     198     252 .. 0.80
   2 !    7.8   0.0     0.004       3.3       3      23 ..     902     923 ..     900     952 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.013
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 +++Grp +G StL+++++ge
  CCE29716.1 200 IVLGRPGSGCSTLLKTICGE 219
                 689***************96 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.004
                 EEEESTTSSHHHHHHHHHTS.T CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.k 23 
                 a++G + +GK+tL+ al ++ +
  CCE29716.1 902 ALMGVSGAGKTTLLDALAQRtT 923
                 899**************98742 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.15   1.2e+02       7      29 ..     198     220 ..     194     242 .. 0.84
   2 !   10.5   0.0   0.00068      0.55       5      29 ..     898     922 ..     895     943 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.15
      AAA_22   7 ilvvtGesGtGKTtllrrlleql 29 
                 +l+v G +G+G +tll+++  +l
  CCE29716.1 198 LLIVLGRPGSGCSTLLKTICGEL 220
                 799**************986666 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00068
      AAA_22   5 agilvvtGesGtGKTtllrrlleql 29 
                  ++++++G sG+GKTtll  l+++ 
  CCE29716.1 898 GTLTALMGVSGAGKTTLLDALAQRT 922
                 57899**************999875 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1      0.01       8.3       2      25 ..     198     221 ..     197     231 .. 0.87
   2 !    8.9   0.4    0.0016       1.3       3      26 ..     901     924 ..     899     933 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.01
                 CEEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawa 25 
                 l+i+ G++GsG +tLl+ ++ ++ 
  CCE29716.1 198 LLIVLGRPGSGCSTLLKTICGELH 221
                 689****************98775 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0016
                 EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawae 26 
                  +l G +G GKTtLl  la+    
  CCE29716.1 901 TALMGVSGAGKTTLLDALAQRTTM 924
                 6799**************997655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0         2   1.6e+03      21      56 ..     198     234 ..     169     264 .. 0.69
   2 ?   13.3   0.0   0.00011     0.088      21      41 ..     900     920 ..     896    1006 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2
      AAA_23  21 ltlItGpNGaGKTTildAiklaLyg.etprlsrksgr 56 
                 l ++ G  G+G +T+l  i+  L g e ++ s+ +++
  CCE29716.1 198 LLIVLGRPGSGCSTLLKTICGELHGlELGEQSKIDYN 234
                 66788999***********988866233444444444 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00011
      AAA_23  21 ltlItGpNGaGKTTildAikl 41 
                 lt++ G  GaGKTT+ldA+  
  CCE29716.1 900 LTALMGVSGAGKTTLLDALAQ 920
                 8999**************975 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.057        46       2      35 ..     200     242 ..     199     269 .. 0.68
   2 ?    7.7   0.0    0.0055       4.5       3      25 ..     903     925 ..     901     960 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.057
                 EEESSTTSSHHHHHHHHHHHH.........THEEEEEETTTCS CS
         AAA   2 llyGppGtGKTllakavakel.........gvefleisgsell 35 
                 ++ G pG G ++l k ++ el         ++++  is ++++
  CCE29716.1 200 IVLGRPGSGCSTLLKTICGELhglelgeqsKIDYNGISQKRMI 242
                 789*****************84433333333444444444444 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0055
                 EESSTTSSHHHHHHHHHHHHTHE CS
         AAA   3 lyGppGtGKTllakavakelgve 25 
                 l+G  G GKT+l  a+a+ + + 
  CCE29716.1 903 LMGVSGAGKTTLLDALAQRTTMG 925
                 89****************97544 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.16   1.3e+02      17      38 ..     196     216 ..     187     228 .. 0.83
   2 ?    9.2   0.1    0.0011      0.89      19      42 ..     899     922 ..     891    1009 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.16
      AAA_30  17 gdrvavltGpAGtGKttalkal 38 
                 g  + ++ G++G+G +t+lk++
  CCE29716.1 196 G-ELLIVLGRPGSGCSTLLKTI 216
                 4.4899*************987 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0011
      AAA_30  19 rvavltGpAGtGKttalkalreaw 42 
                  +++l G+ G+GKtt+l al++  
  CCE29716.1 899 TLTALMGVSGAGKTTLLDALAQRT 922
                 58899**************98755 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2      0.41   3.3e+02       1      19 [.     202     220 ..     202     286 .. 0.82
   2 ?   10.4   0.0   0.00083      0.68       1      31 [.     904     933 ..     904     981 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.41
                 EE-TTSSHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky 19 
                 lG PGsG +t+++++  ++
  CCE29716.1 202 LGRPGSGCSTLLKTICGEL 220
                 699*********9998766 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00083
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllr 31 
                 +G+ G+GK+t+++ l+++    +++ Gd+l 
  CCE29716.1 904 MGVSGAGKTTLLDALAQRTTMGVIT-GDMLV 933
                 59*****************999998.99985 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       6.2     5e+03       4      56 ..     201     271 ..     199     292 .. 0.54
   2 ?   10.8   0.3   0.00052      0.43       3      24 ..     902     923 ..     900     931 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 6.2
      AAA_28   4 itGgestGKTtlleaLa.........ar......gyp...vvpEaareileekl.akgedalpwvedllafa 56 
                 ++G +++G +tll+ +          ++      g++   +++E+  e++ ++  +k++ +l    + l+fa
  CCE29716.1 201 VLGRPGSGCSTLLKTICgelhglelgEQskidynGISqkrMIKEFKGEMIYNQEvDKHFPHLTVG-ETLEFA 271
                 67889999999986554332233333113333342223335566555444444335555555553.555555 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00052
      AAA_28   3 vitGgestGKTtlleaLaargy 24 
                 +++G +++GKTtll aLa+r +
  CCE29716.1 902 ALMGVSGAGKTTLLDALAQRTT 923
                 6899**************9944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.44
# Mc/sec: 10387.89
//
Query:       CCE29717.1  [L=545]
Description: related to cellobiose dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-52  178.4   0.0    2.8e-52  177.9   0.0    1.2  1  GMC_oxred_N     GMC oxidoreductase
    2.8e-39  134.9   0.0    4.6e-39  134.2   0.0    1.3  1  GMC_oxred_C     GMC oxidoreductase
    6.9e-05   22.1   0.0     0.0001   21.5   0.0    1.2  1  Lycopene_cycl   Lycopene cyclase protein
    0.00024   21.3   0.1     0.0007   19.8   0.1    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0055   16.3   0.1       0.02   14.5   0.0    1.9  3  DAO             FAD dependent oxidoreductase
     0.0081   15.4   0.0      0.021   14.1   0.0    1.7  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.017   14.0   0.0      0.025   13.4   0.0    1.2  1  Trp_halogenase  Tryptophan halogenase
      0.023   13.8   0.0       0.28   10.2   0.0    2.2  2  FAD_binding_2   FAD binding domain
       0.16   11.2   0.0       0.46    9.7   0.0    1.7  2  Thi4            Thi4 family
       0.17   10.5   0.0       0.26    9.9   0.0    1.2  1  HI0933_like     HI0933-like protein


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.9   0.0   1.6e-55   2.8e-52       1     296 []      14     306 ..      14     306 .. 0.87

  Alignments for each domain:
  == domain 1  score: 177.9 bits;  conditional E-value: 1.6e-55
  GMC_oxred_N   1 vdelveggGsagsvvAaRLse.dpstsvlvleaggreknrlimvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRtpaa 97 
                  +d++++ggG+ag+vvA+RLs   p+ +vl++eag+++ n ++  ++ ++ ++ +   ++ + ++e+ + ++ +   ++k+lGG s+ N  +++R+ ++
   CCE29717.1  14 FDYIIVGGGTAGCVVASRLSSyLPERKVLLIEAGPSDFNLNQVLDLRQWLSLLGGDLDYDYGTVEQPMGNSHIRHSRAKVLGGCSSHNTLISFRPFRH 111
                  69*****************8647******************77777776666655555555556666666666666********************** PP

  GMC_oxred_N  98 dldeWeeeaglegwssdevlpafkkvetaqalesdlhgvdgrlgvtekgkeesplnkallkaaeel.Glpvprdlngk........hqcGvcllgvtc 186
                  d+d+W e+ g egw+ +++ ++ +++            + +++++    + ++ l+k+++ka+ ++  +p+  d+n++        +  G+  +  + 
   CCE29717.1 112 DMDRWVEQ-GCEGWDFETMMRYADNLR----------NTFQPVHA----RHRNQLCKDWVKACSDAfDIPIIPDFNEEirtkgqltQGAGFFSVSYNP 194
                  *******9.******999999999999..........67799999....89999*********9863777555555544444666677788888889* PP

  GMC_oxred_N 187 rtgarqstarawLrpale....rpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvd 280
                  ++g r+s++ a+++p l+    rpnl++lt+a ++kii+e  ++ra G+++ +++g+ k l   +ke++++aGa+ +P l++ SGlG++ +L+++g +
   CCE29717.1 195 DNGYRSSASVAYIHPILRgeelRPNLTVLTKAWVRKIIVE--NDRASGLSIFTSGGQ-KILLKPRKEIILCAGAIDTPRLMLHSGLGPRGQLESLGLN 289
                  ***************995455589****************..***************.999999********************************** PP

  GMC_oxred_N 281 vvvdlp.vGknLqdHpv 296
                  vv d p vG+nL dHp+
   CCE29717.1 290 VVKDIPgVGENLIDHPE 306
                  ***************95 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.0   2.6e-42   4.6e-39       2     144 .]     386     526 ..     385     526 .. 0.97

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 2.6e-42
                  ---EEEEESTT-TCCEEEEE--TT-SHH..HHHHHHHHHHHHHHHCTSGGG.TTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B CS
  GMC_oxred_C   2 esrGrvtlsssdptgaplidpnylsdpr..dlaalvealkaarkilaaaal.dvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrM 96 
                  +srGrv l+s+dp ++p++d++y++dp+  d a+lv+++kaarki++++++  +l+ee+ pg+       +v++de++ ++ ++ ++t++Hp Gt++M
   CCE29717.1 386 RSRGRVFLTSADPAAKPALDFRYFTDPEgyDAATLVAGIKAARKIAQQSPFkEWLKEEAAPGP-------KVQTDEEISEYARRVAHTVYHPAGTTKM 476
                  79*************************999*******************99899999999999.......9*************************** PP

                  -STCGC..BSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  97 Gadpkd..sVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  G+  kd  +VVD++lrv+gv++Lr++Da +fP++p+ np++t+l ++e+a
   CCE29717.1 477 GDTTKDelAVVDAQLRVRGVKGLRIADAGIFPEMPTINPMITVLCVGERA 526
                  *99999******************************************97 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.8e-08    0.0001       1      36 [.      15      50 ..      15      60 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.8e-08
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   D +++G+G Ag+ +A rl +  p+ kv+liea+ps 
     CCE29717.1 15 DYIIVGGGTAGCVVASRLSSYLPERKVLLIEAGPSD 50
                   789******************************986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   3.9e-07    0.0007       1      29 [.      18      48 ..      18      49 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.9e-07
                   EE--SHHHHHHHHHHHCC..TEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfdvlllekrd 29
                   IvG+G +G+v A++L+ +   ++vll+e+++
     CCE29717.1 18 IVGGGTAGCVVASRLSSYlpERKVLLIEAGP 48
                   9****************9999*******986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.1e-05      0.02       1      30 [.      15      48 ..      15      52 .. 0.86
   2 ?   -3.1   0.0       2.4   4.3e+03     169     202 ..     228     265 ..     219     277 .. 0.57
   3 ?   -2.8   0.0         2   3.6e+03     279     296 ..     451     468 ..     383     500 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
                EEEEECTSHHHHHHHHHHHHT.T...EEEEESSS CS
         DAO  1 dvviiGGGiiGlstAyeLarr.g...Vtllekgd 30
                d +i+GGG +G+ +A  L+   +   V+l+e+g+
  CCE29717.1 15 DYIIVGGGTAGCVVASRLSSYlPerkVLLIEAGP 48
                789***************86554568*****994 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.4
                 EEEEEEEETCEEEEE.EECT.EEEE...EEEE.EEE--GG CS
         DAO 169 vtgleeedgkvwgve.rttp.gend...aada.vVnaaGa 202
                 v+++  e+++++g+    t+ g++      ++ ++++aGa
  CCE29717.1 228 VRKIIVENDRASGLSiF-TSgGQKIllkP-RKeIILCAGA 265
                 55554444455555531.23243323433.4459999997 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2
                 SCSHHHHHHHHHHHHHHS CS
         DAO 279 evdeedidellealrklf 296
                 ++dee  ++ ++ +++++
  CCE29717.1 451 QTDEEISEYARRVAHTVY 468
                 333333333333333333 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.2e-05     0.021       1      32 [.      14      47 ..      14      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
                 CSEEEE--SHHHHHHHHHHHHH..TS-EEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqa..gakvtlvele 32
                 +d++++GgG AG+ +a +l+ +  + kv+l+e++
   CCE29717.1 14 FDYIIVGGGTAGCVVASRLSSYlpERKVLLIEAG 47
                 589******************555*******854 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.4e-05     0.025       3      33 ..      17      46 ..      15      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
                    EEE--SHHHHHHHHHHHHHTTTSSEEEEEE- CS
  Trp_halogenase  3 vivGGGtaGwlaAaalakalkgklevtlves 33
                    +ivGGGtaG ++A+ l+ +l +  +v+l+e+
      CCE29717.1 17 IIVGGGTAGCVVASRLSSYLPE-RKVLLIEA 46
                    7*******************66.99999996 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00015      0.28       1      33 [.      15      49 ..      15      53 .. 0.89
   2 ?    0.7   0.0      0.12   2.1e+02     155     204 ..     218     268 ..     196     290 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
                   SEEEE--SHHHHHHHHHHHH..TTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaae..aGlkvavvekeqe 33
                   D i++G+G AG++ A +++     +kv+++e +++
     CCE29717.1 15 DYIIVGGGTAGCVVASRLSSylPERKVLLIEAGPS 49
                   88***************999867779999998875 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.12
                    T.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 155 g.vdfqerteadeLivedgrvtGavvenpesgrevrirak.avvlatgGfgr 204
                    + +++++++ ++++ive++r++G  +  + ++++  ++ +  ++l +g++  
     CCE29717.1 218 PnLTVLTKAWVRKIIVENDRASGLSIFTSGGQKI-LLKPRkEIILCAGAIDT 268
                    3589999999*************99994444444.45666699999999886 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00026      0.46      18      49 ..      14      46 ..       3      49 .. 0.91
   2 ?   -3.4   0.0       2.6   4.6e+03      84     135 ..     192     241 ..     188     244 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00026
                EEEEEE--SHHHHHHHHHHHHC.TTS-EEEEES CS
        Thi4 18 sDvvivGaGssGLtaayylakk.pdlkvailer 49
                 D +ivG+G++G   a  l+   p+ kv+++e+
  CCE29717.1 14 FDYIIVGGGTAGCVVASRLSSYlPERKVLLIEA 46
                599*****************999********97 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.6
                 -EEESSEEEESEHHHHHHHHHHHHHTSTTEEEEESEEEEEEEEETBTEEEEE CS
        Thi4  84 yedegdyvvvkdaalftstllskvlqlanvkllnavaveDlivregegvaGv 135
                 y++ + y   +  a +   l  + l  +n+ +l+   v  +iv + ++ +G+
  CCE29717.1 192 YNPDNGYRSSASVAYIHPILRGEELR-PNLTVLTKAWVRKIIVEN-DRASGL 241
                 55544444444444444445555666.999999999999999988.666665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00015      0.26       2      33 ..      15      48 ..      14      50 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00015
                 SEEEE--SHHHHHHHHHHHH..TT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaak..rgkrVlllekak 33
                 d i++GgG AG   A ++++   +++Vll+e+++
   CCE29717.1 15 DYIIVGGGTAGCVVASRLSSylPERKVLLIEAGP 48
                 78**************99652279*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3913.29
//
Query:       CCE29718.1  [L=4308]
Description: non-ribosomal peptide synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.8e-154  512.3   0.0    2.8e-76  256.8   0.0    2.6  3  AMP-binding    AMP-binding enzyme
     4e-147  490.6   0.0    3.1e-36  125.1   0.0    7.6  7  Condensation   Condensation domain
      9e-52  173.3  14.3    2.5e-10   40.6   0.0    7.1  6  PP-binding     Phosphopantetheine attachment site
    8.8e-11   42.6   0.0    0.00043   21.2   0.0    4.1  4  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.8   0.0   6.4e-80   2.8e-76       1     423 []     666    1059 ..     666    1059 .. 0.89
   2 !  253.0   0.0     9e-79   4.1e-75       2     423 .]    2131    2530 ..    2130    2530 .. 0.86
   3 ?   -4.2   0.0         1   4.6e+03     242     266 ..    3502    3526 ..    3494    3551 .. 0.82

  Alignments for each domain:
  == domain 1  score: 256.8 bits;  conditional E-value: 6.4e-80
                   HHHHHHHSTTSEEEEE.......CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHH CS
  AMP-binding    1 leeqaaktpdkvalvd.......sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayi 89  
                   ++e+a+++p + al           +  t+TY+ l + +n+ A++ +  G++ g+ Vai++ +s  ++ a+l++ kaG+++ p+ p+++  +++ i
   CCE29718.1  666 FDEAAKRNPHAEALRIvssvegdLFQVATMTYASLSRSANKTAHFVQGNGAEVGEIVAIIMNKSTALYTAILGVIKAGCAYLPILPATPVSRVREI 761 
                   6889999999999933668888866789*******************88*********************************************** PP

                   HHHHTESEEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHH CS
  AMP-binding   90 ledseakvliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlv 185 
                   l++s++++++  vd++      ++ ++l  ++ vi+l a+e        +++e +++a    + +++++d l y+i+TSGTTG PKGV +++rnl+
   CCE29718.1  762 LRQSQVRYCL--VDDAV-----NNFQDL--QDMVIILNANE-------AISSELPDDA----PIVPPDADRLSYVIFTSGTTGVPKGVAVTQRNLA 837 
                   **********..76544.....444433..33466666333.......2333333332....46689***************************** PP

                   HHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHC CS
  AMP-binding  186 anvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvleallesgalkaakkak 280 
                   +n++ l ++ + k++ + ++l+  + a++++  +e+++a ++G++++ +++d   +d   + ++i++l++t++ ++P+v+  +  +  +k      
   CCE29718.1  838 SNITHL-ITIYPKVSVRPRLLQACSHAFDVSA-FEIFYAWYAGMSLCAADNDILfRD---IEHAIRALEITHLSLTPTVAALI--D--PK------ 918 
                   **9997.6667888889**************8.*******************99666...5689****************999..2..34...... PP

                   CGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-S CS
  AMP-binding  281 dlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmk 376 
                   + +++++++++gep+ +++++++ +l    +++gYG++Ett +++ ++++ + + + + G+++pg+ v ++ ++t+  vp g  Ge +++g +v++
   CCE29718.1  919 NVPGVEFLVTAGEPVTSSVVQKWGSL----LFQGYGPSETTNICS-VKKMSHGEFTEHLGWVFPGTSVVVLSPNTLDVVPFGWLGEFCFGGSQVAR 1009
                   7889****************999888....689***********9.8889999999**************************************** PP

                   EBTT-HHHHHHHEEE..T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding  377 gYlkkpeataeafds..e.grwlrTGDlgrldedGyleivgRkkdliklr 423 
                   gYl+++e+t ++f++  + gr +r+GD+gr+ ++G+l i+gR++ ++k+r
   CCE29718.1 1010 GYLNDDELTTQKFIEhpSfGRIYRSGDVGRMLPNGSLMIIGRLDSQLKVR 1059
                   **************8754789***************************96 PP

  == domain 2  score: 253.0 bits;  conditional E-value: 9e-79
                   HHHHHHSTTSEEEEE.......CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHH CS
  AMP-binding    2 eeqaaktpdkvalvd.......sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayil 90  
                   e++a+ +p  +al +        g  +t+TY++ld+  n++A+ L    v  gd Va+  p++pe +++ll+ilkaG+  + l+p+ ++++ ++il
   CCE29718.1 2131 EQKADSQPHLPALEFvesftgdLGNTRTWTYEQLDKIGNQVAHLLAG-TVSAGDIVAVHFPKCPEAYFSLLGILKAGCSFIALDPSAPSARKRFIL 2225
                   78899999999998888999996779*******************98.8*********************************************** PP

                   HHHTESEEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHH CS
  AMP-binding   91 edseakvliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlva 186 
                   eds+a++l+  +d           +++ +   ++vl+   +++ e+l +   s+      + +e+l+p++++y +YTSGTTG+PKG+ ++h+n+v+
   CCE29718.1 2226 EDSRATCLL--IDGSF--------DTEFEL-DITVLK---ISE-ETLASYPISR-----IVHAEPLSPQSTCYCLYTSGTTGTPKGCEITHENTVQ 2301
                   *********..65544........222222.233333...222.2333333222.....3345679****************************** PP

                   HHHHHH..HHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHC CS
  AMP-binding  187 nvaslk..letrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkak 280 
                   ++ +++  ++ +++  +d+++l+++ +++++++ le +++ ++G tvv +pkd  ld   l++ i+kl +t+i ++P++++       ++      
   CCE29718.1 2302 ALMAFQdlFQGHWQ--QDSRWLQFAGFHFDVSV-LEQYWSWSVGITVVAAPKDLILD--DLVGSINKLAITHIDLTPSLARLTH----PD------ 2382
                   ****9875555555..699*************8.*****************997777..489****************999773....34...... PP

                   CGTT.-SEE.EEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS CS
  AMP-binding  281 dlss.lrlv.llggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgv 374 
                   d +s  + v ++gge+l +e+l+++  ++   ++++YG+TE+t+ vt+ ++   + +++ +Gk +p+v   +    t+ pv +g +Gel+v+g+ v
   CCE29718.1 2383 DIPSlCKGVfITGGEQLHQEILDAWGPKG-V-IYNAYGPTEATIGVTMYQRVPVNGRPSNIGKQFPNVGSFVFHSGTEVPVMRGGVGELCVSGKLV 2476
                   788866666246**********9999996.4.9*************87443444456888************************************ PP

                   -SEBTT-HHHHHHHEEE....T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding  375 mkgYlkkpeataeafds....e.grwlrTGDlgrldedGyleivgRkkdliklr 423 
                    kgYl +pe+t+e+f      + +r +rTGDl+r+  dG++ ++gR++d++klr
   CCE29718.1 2477 GKGYLHRPELTREKFPIlsdfSgERIYRTGDLVRILSDGSFDFLGRADDQVKLR 2530
                   ***************6367784467***************************96 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 1
                   HHHHHHHHHHHT-SEEEEEHHHHHH CS
  AMP-binding  242 pklllelieklkvtviagvPrvlea 266 
                   +++++ ++++ ++tv++  P+++ a
   CCE29718.1 3502 DAFWKTYLSHARPTVFTERPSMCAA 3526
                   489***************9999875 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.0   6.8e-40   3.1e-36       7     444 ..     238     637 ..     232     643 .. 0.85
   2 !   53.2   0.0   4.2e-18   1.9e-14     193     443 ..    1310    1543 ..    1276    1556 .. 0.78
   3 !   89.6   0.0   3.9e-29   1.7e-25       5     445 ..    1691    2101 ..    1687    2107 .. 0.84
   4 !   83.4   0.0   2.9e-27   1.3e-23       5     437 ..    2776    3178 ..    2773    3194 .. 0.82
   5 !  101.9   0.0   7.3e-33   3.3e-29       8     440 ..    3328    3728 ..    3322    3734 .. 0.80
   6 !    9.6   0.0   7.3e-05      0.33       3      63 ..    3887    3946 ..    3885    3956 .. 0.87
   7 !   16.3   0.2   6.5e-07    0.0029     130     332 ..    3987    4190 ..    3978    4213 .. 0.74

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 6.8e-40
                   XXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHHHH CS
  Condensation   7 lspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaieefa 103
                    +p+Q    +l++  +++  y  ++ l++   + +++l +a++++i+ ++aLRt f+ ++ +++  v+++ ++ ++ vl  s  + + + ++++ f+
    CCE29718.1 238 CTPLQ--SAMLAETARNPALYCNEILLRAMRDVSVQALIEAFNKVIQSNEALRTGFVYHQGQHVSVVFSTPSDGQVSVLTQS--KPDFQLDTADDFL 330
                   68889..888999999*******************************************9999999999*******999988..5555556677777 PP

                   HHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHHHHHHH CS
  Condensation 104 qkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekeeaYWse 200
                         pf ++  p       ++a++++ +l++ HH i DG+S+  ll d ++l      +++lp  + + +k+    +++  +++   +++a+Wse
    CCE29718.1 331 H-----PFMVQLIP-------NVAKRQVDILIQAHHAIYDGWSMDMLLSDVSQLL-----NRQLPPRRHQ-FKQVLSYLSR-DANTTKDEARAFWSE 408
                   7.....66666555.......56677777************************99.....5555554444.6665555555.55566789******* PP

                   HHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--SS-EE CS
  Condensation 201 qlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvGlFvn 297
                   +l g  ++  +pk   rp+ +++k   +  ++ +   + +r+l ++ +++ + +++aal+l+ + +tgq d+ vg++ sgR+ ++++ie ++G  + 
    CCE29718.1 409 TLLG-WNKPPFPKLLSRPEADKIK---THCAFLNMCPSSVRELSQSCEISTQVLFQAALALVWQGITGQPDVLVGSVLSGRTIPVSGIEGIIGPCIV 501
                   ***9.66677****9999999999...55555567999999******************************************************** PP

                   EEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE...E.....SSEE CS
  Condensation 298 tlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssveaeeeskydls 394
                    +Plr+d++   +  +l+k++ ++ +++++h + pl e+     l+     + + d+ f+++  l++        l++    ++ +e+ +  +  l 
    CCE29718.1 502 SMPLRVDLESMRANIDLLKSIHAKNRSMMEHCDLPLHEIGVLAGLRPG---ESMYDVLFVYQQSLYS--------LQGKCEVLQHIEHIDRLETNLL 587
                   ********9999999************************888887776...5678******763333........2222222344455666667899 PP

                   EEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC CS
  Condensation 395 leasetngkltikieYntslFdeetierflerlkelleqviehpeqklse 444
                   +e+ +t+ +++++i Y++s  +e+++++++++++ l ++++++p++ l +
    CCE29718.1 588 VEVEPTTTGFSLQITYHSSFVSEKFVDQMSQQIRSLSQKILNEPSAALGS 637
                   *******************99***********************998765 PP

  == domain 2  score: 53.2 bits;  conditional E-value: 4.2e-18
                    HHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTC CS
  Condensation  193 keeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikd 287 
                    + +++W +q++g++ + ++++  +r+  ++   +++si +     e ++k  ++ gv+l ++ +a ++++Ls + +++div+g ++sgR+ ++++
    CCE29718.1 1310 DVQSFWIDQFRGFEGSPSFARS-TRLCLNQCM-HSVSIGI---SLEDIQKKSRSFGVSLLSLCQASWAAVLSSVFERSDIVFGNVVSGRTIAMEG 1399
                    5578999999999999999999.555555544.4666666...558899999999************************************999* PP

                    HHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCS..EEECE CS
  Condensation  288 iermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlse..lklsv 380 
                    i+r +    nt+Plr+d+++  +  +l+k+ ++   + +p+q  pl+ ++k   +++      Lfd+ f ++  ++ + +++ ++l+e  +++  
    CCE29718.1 1400 IDRLIAPCFNTIPLRMDISRCAQNMDLMKAFQHLNSRLLPYQFSPLKLIQKIAGTRHR----GLFDTLFLLQQ-PLRDMDTSVWTLEEdiGDMD- 1488
                    *****************************************************99886....8********88.66655555555544003333. PP

                    E...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCC CS
  Condensation  381 ssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqkls 443 
                      v+        ++++  ++ ++  ++++Y      +   + ++e + ++l++++ +p ++++
    CCE29718.1 1489 --VP------LVCEVIPCPNLNSVLMNLHYDMGMITDDLASAISELFNQTLQRMVLNPYDTVA 1543
                    ..22......22344444466667777777777777777777777777777777776666665 PP

  == domain 3  score: 89.6 bits;  conditional E-value: 3.9e-29
                    EEXXCCHHHHHHHHHH.SSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE....TTEEEEEE-.TT-----EEEE-T..TSSSH CS
  Condensation    5 yplspaQkrmwflekl.eeessaynmqavlklegeldlerlekalqelierhdaLRtvfle..eengepvQvil.eerevelevleisdleesee 95  
                    +p +++Q    +++ + + ++  y   +++k+++++dl+ le a+  l++ h+ LRt fl   +  +  + +++ +++++ + v+ ++  ++s++
    CCE29718.1 1691 LPCTSLQ--DAMISGFlNSAEGYYLNFLTFKVRQGVDLSGLEYAWIRLQQCHPMLRTGFLStpQ-SESSFSMVRwKSSSCRCPVTRFQ--KQSSN 1780
                    5666666..333333303344456666799*****************************98534.5555555656*************..67777 PP

                    HHHHHHHHHHHHTC--SCCCS.-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--.HHHHHHHHHHHHCS CS
  Condensation   96 eeaieefaqkdlqepfdLekg.pLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktp.Ykdyaeweqqyles 188 
                    + +i+++  + ++  ++ + g  L+r+al++ +++ +++ +++HH + D+  lg l+r l ++     kg+ ++ p+++p  ++   +      s
    CCE29718.1 1781 DFDISTWRGE-SKLAMKENLGqLLWRVALVE-TDSIATMNVAIHHALYDAKTLGDLFRGLRRIL----KGDVVDFPPIEPaLAQLLLR----TRS 1865
                    789*****96.666666666679********.*******************************9....***********855544444....334 PP

                    HHHHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT CS
  Condensation  189 kdlekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes 283 
                    k   +++++W++  ++   v+ +p   ++++++++k  + + +l+ ++  ++++++k+ g++++ vl+a ++ +Ls y g++ +v+g++++gR+ 
    CCE29718.1 1866 K-DLDTQNFWENEADK-TVVNRFPIM-NPLREEDWKVVTCQHNLSMSM-VEIHSITKKMGISIQAVLQATWARILSSYLGESSVVFGVVFAGRNT 1956
                    4.367899*******8.445669999.99*******999999996665.579******************************************* PP

                    CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HH.CCCEEECCCCSEE CS
  Condensation  284 eikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgq.eseeeesqlselk 377 
                       +  ++    + t+P+  + + ++    l+ +++e   ++++hq + l +++k l +  +    p+fd+v++++n  +q      +++l + +
    CCE29718.1 1957 D--ETAEAPFPCLTTVPVIAETRSSN--KGLLDNMMEYNSRSYKHQFVSLASIQKWLGHAGS----PVFDTVLVYQN--TQsCLPDAKWDLIADE 2041
                    9..899999999*********97666..89****************************9996....***********..2212333344444444 PP

                    ECEE...E.....SSEEEEEEE.TTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC- CS
  Condensation  378 lsvssveaeeeskydlslease.tngkltikieYntslFdeetierflerlkelleqviehpeqklsel 445 
                    +s          +y +sle+ +  +g+++i++  ++++   e+ + +l+++  +l  +++ p+ +++el
    CCE29718.1 2042 PS---------VEYTVSLEVEPsADGEMCIRLTTRSDVVPTEQAQLILRQFNAALVHLVSTPDGTEDEL 2101
                    44.........56*********99***************************************999886 PP

  == domain 4  score: 83.4 bits;  conditional E-value: 2.9e-27
                    EEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSH..HH CS
  Condensation    5 yplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleesee..ee 97  
                    +p s++Q++m  ++ +ee s+ y+  + ++l++    +++++a+++ i+  ++LRtvf++  ++  +Qv  +++++ ++ l ++++ + +   ++
    CCE29718.1 2776 APCSSLQEGMISAALSEEISRPYFNWFDVRLSSDTSMTAVRQAWEKTIQCLPILRTVFVKT-TDGYFQVAMSQAKYCWRKLFVTQDHNIKPllHD 2869
                    789*******************************************************977.888999999888888866666644544431144 PP

                    HHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHH CS
  Condensation   98 aieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdle 192 
                    + + ++ +  ++++ +  +pL  +++   + ++l l + v H + DG S++++    a+++    ++e++  ++     ++++++ +    +++e
    CCE29718.1 2870 DYSLWVAE-NASNIHIL-SPLQFVHVTGPELQQLRL-F-VFHGLYDGSSIQLMQDFAARIF----QNETPVCGP-----SFVDALCR-GPLQKFE 2950
                    48888886.44444443.367777777744444444.4.45788*******8777777888....677766644.....34566555.56666** PP

                    HHHHHHHHHHH......S---BSS---SS---S-EEEEEE.EE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCST CS
  Condensation  193 keeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikl.deeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseik 286 
                      + +W+e l+   p   L++  a+++ +  +    +++l ++     l++l ke++vtl+ + l++++++L+ yt q  +  g+++sgR     
    CCE29718.1 2951 FCRPFWEEHLRDWRP-SPLLRT-ASSEGDIGQ----VVSLsRDISVGPLEDLRKEENVTLQAIILSIWTVVLQSYTAQ-PLTLGVVVSGRAIDLP 3038
                    ***********9555.668887.666666555....44441333567899999***********************98.7899*********777 PP

                    CHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE CS
  Condensation  287 diermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvs 381 
                     ie++vG   nt+P+ +++ ++ t + l++r  +   +++  q +pl++++k + + r+     L+d+ f f+         ees  + +    +
    CCE29718.1 3039 HIENTVGPLFNTIPFFSKSLNDMTWQMLVQRCHAFNADTLAFQHVPLKDIQKWCSRGRS-----LLDSLFAFQQ--------EESAPANMSSPWT 3120
                    *******************************************************9998.....********65........6677777777777 PP

                    ....E.....SSEEEEEEE.TTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHS CS
  Condensation  382 sve.aeeeskydlslease.tngkltikieYntslFdeetierflerlkelleqvieh 437 
                    +ve  ++  +y l++ea+   ng+l++++  +    ++  +e++l+++ ++ + v ++
    CCE29718.1 3121 FVEgRSSSVNYSLAFEATRsLNGTLHLHLVARDGMANRDALEQMLNHFAQIALTVKQD 3178
                    8999999************99***************************9987776655 PP

  == domain 5  score: 101.9 bits;  conditional E-value: 7.3e-33
                    XCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE......TTEEEEEE-TT-----EEEE-T..TSSSHHHH CS
  Condensation    8 spaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfle....eengepvQvileerevelevleisdleeseeeea 98  
                    +++Q+ m      ++ +  yn+  vl+l +e+d erl++a+ ++i   ++LRt fle    + ++   Qv+ ++ + ++e+ ++s  e  + ++ 
    CCE29718.1 3328 TSLQESMIAGMIQSDFEWYYNH-DVLELGEEVDMERLKDAWFKVIASSPILRTGFLEvddsQIKTAYCQVVFKKTSSSIEIGQVS--EIPRLQDV 3419
                    6666665554444445555555.579*****************************985322355677899999999999777777..33333444 PP

                    HHHHHHHHHTC--SCCCS..-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHH CS
  Condensation   99 ieefaqkdlqepfdLekg..pLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdl 191 
                    i ++ ++         +g   L++++l++  e++ ++++s+ H + DG+Slg+l+ dl ++Yq  ++ +e        Y++    +         
    CCE29718.1 3420 IANARER-----AVCGRGikDLVQVSLISGPESKNYMVMSMAHALYDGWSLGLLFDDLRAAYQGQLQTRE--------YSRILATQPALF---MT 3498
                    5555553.....444444449*****************************************43333333........554444433333...33 PP

                    HHHHHHHHHHHH......S---BSS---SS---S-EEEEEE...EE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT CS
  Condensation  192 ekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikl...deeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes 283 
                     ++ a+W+++l++     + p+  +++++  + +d ++++    +++t++++ +++k+++ +l+++  a+++++   ++++ d+v+g + sgR  
    CCE29718.1 3499 GDTDAFWKTYLSH-----ARPTVFTERPSMCAAEDGIVFRKdriASHTMSTISSFCKQNSLSLQSLCTACWAAVVGFLSKSLDTVFGAVLSGRDF 3588
                    5899********9.....5577777788888888999998777799************************************************* PP

                    CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEE CS
  Condensation  284 eikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselkl 378 
                       d ++ +    nt+++r+ +  + t   +++ v  +l +++ hq++pl e +   +l       +Lf++ + ++    + +++e+   s    
    CCE29718.1 3589 D--DADQLMFPTMNTVAVRTVL--HGTAMPFLQYVESCLADIRAHQRVPLREAQAAANLGGR----QLFNSLLILQR-SRDSASSEALCHSID-- 3672
                    *..*****9999*********9..566799***********************999999987....6********77.222223333333333.. PP

                    CEE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTS CS
  Condensation  379 svssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeq 440 
                           ++  +y + +ea  t+++lt +i+ + + F+e++ + +l++++++l+ +++  e+
    CCE29718.1 3673 ------GFSAVEYPICVEAEATGDTLTWRIACKGQFFSENDTDDILQKIEQTLHFFLDASEE 3728
                    ......355778*****************************************988876665 PP

  == domain 6  score: 9.6 bits;  conditional E-value: 7.3e-05
                    EEEEXXCCHHHHHHHHHHSSSS.STTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEE CS
  Condensation    3 deyplspaQkrmwflekleees.saynmqavlklegeldlerlekalqelierhdaLRtvfl 63  
                      +p + +Q  +++l+  +++s   ++ q++ +++++  +  l  a+++l+e  + LRt ++
    CCE29718.1 3887 AALPATAMQ--VYMLSAWQNSSgAVFFPQFCYEISQKYTQHQLAAAWNTLVESVPMLRTHLV 3946
                    56899****..999999887661568899******************************986 PP

  == domain 7  score: 16.3 bits;  conditional E-value: 6.5e-07
                    EEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S-.-.HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S---BSS---SS- CS
  Condensation  130 rlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqkt.p.YkdyaeweqqyleskdlekeeaYWseqlegelpvlqLpkdkarpakrs 222 
                    + llll++ H   DG+Sl+ ++r   +l    ++g++ p++ +  + ++ +           ++e+ +++W ++l g   ++ + + + ++  ++
    CCE29718.1 3987 SRLLLLTIQHAFYDGFSLPAIMRLYVDLL-GRTEGSDKPKLDIDlShWRHFSIL---PTLAGQIESRKQFWVNYLHGHPSEAPVIPVTSPQTTDR 4077
                    568999****************9999998.445555555555440334433333...4456679*************766666555523333333 PP

                    --S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-S.......EEEEEEEEESSTTCSTCHHC--SS-EEEEEEEEE--TT-B CS
  Condensation  223 fkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqd.......divvgteisgReseikdiermvGlFvntlPlridvkeakt 310 
                    ++      k + +  + l++ a++ g+ l++++ aal+  L+    q+        i++g++ ++ +   ++  +++   +n +Plr++++++ +
    CCE29718.1 4078 VS---CLRKQALHDIKDLQRRASSLGIGLQSLFFAALARSLHHRRAQKtqearprTIIFGVYLANQTAH-SQHLHATYPTLNLVPLRVTLSHDSD 4168
                    33...33333556778999**********************9877775223333369*********997.5667777799*************** PP

                    HHHHHHHHHHHHHHHHCCTTS- CS
  Condensation  311 fselikrvkedllkaephqgyp 332 
                    +  +  ++ +dl +++ + + +
    CCE29718.1 4169 LGAIAADIHQDLQQIQADTRAD 4190
                    ************9997765443 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.4   1.4e-09   6.4e-06       2      64 ..     131     189 ..     130     192 .. 0.92
   2 !   20.8   0.0   8.4e-08   0.00038       4      67 .]    1194    1257 ..    1191    1257 .. 0.87
   3 !   33.1   0.0   1.2e-11   5.4e-08       2      67 .]    1585    1649 ..    1584    1649 .. 0.97
   4 !   24.4   0.1     6e-09   2.7e-05       2      65 ..    2664    2727 ..    2660    2729 .. 0.88
   5 !   32.4   0.1     2e-11   8.9e-08       2      65 ..    3218    3280 ..    3217    3282 .. 0.95
   6 !   40.6   0.0   5.5e-14   2.5e-10       2      67 .]    3781    3845 ..    3780    3845 .. 0.97

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.4e-09
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaela 64 
                 k++++v+++l++ ++e    + l   G+DSl+a++l+a l++  g+ei+++ l+ ++ l++++
  CCE29718.1 131 KIVQIVSDILKTGVSE---RSVLTAAGMDSLSAIQLAATLRDN-GLEISVAKLLKCRLLQDIC 189
                 799********98555...999*********************.************9999987 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 8.4e-08
  PP-binding    4 relvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   e+++e  ++ +++i+  t++  lG+DS++a+ +   +++++g+ ++ s ++ ++++a la++l
  CCE29718.1 1194 AEAISESYNILQSDIGRWTPFPALGIDSISAIGFSKLVSARLGCHVSISAILRNSSVALLARAL 1257
                  55666666666777777799***************************************99975 PP

  == domain 3  score: 33.1 bits;  conditional E-value: 1.2e-11
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                   +re+++++ gv++ +i+  t++f lGlDS++av++++ l+++ ++++++sd+ ++ + ++laa++
  CCE29718.1 1585 LIREAFSSISGVSEHAIHRPTTIFQLGLDSINAVQIASVLRAQ-NLPVSSSDVVQCASCEALAARI 1649
                  599****************************************.*******************986 PP

  == domain 4  score: 24.4 bits;  conditional E-value: 6e-09
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                  +++e++    +vp e+i+ +t+ fdlG+DS+++++l a l+e+  +  +++ +  +p +++l++
  CCE29718.1 2664 RVIEVLGAFANVPKEQISETTSVFDLGVDSVSVLQLSAVLKEKGIIGATPASIIRNPIISDLVR 2727
                  567777777888*******************************777888888889999999987 PP

  == domain 5  score: 32.4 bits;  conditional E-value: 2e-11
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                   lre ++ + ++p e++ p t++ +lG+DS++a+++ a+l ++ g+++  s++  ++t++++ +
  CCE29718.1 3218 VLREELCALANIPFEDVQPGTSILELGIDSIDAIKISARLAKR-GIRLAASQVTRLQTISAMEN 3280
                  699****************************************.*********88*****9865 PP

  == domain 6  score: 40.6 bits;  conditional E-value: 5.5e-14
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  ++r++++ev  vp+e+i p+++l+ lGlDS++a+++   l++  ++++ +++l++ +++ae+a ++
  CCE29718.1 3781 RIRAVLSEVSAVPAESIPPTATLYHLGLDSISAIKVSLLLRKV-NIDLKPRELLQSNSIAEMASRI 3845
                  79****************************************9.******************9875 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   9.7e-08   0.00043       1      76 []      29      97 ..      29      97 .. 0.81
   2 ?   -2.3   0.0         2   9.2e+03      43      73 ..     113     143 ..     104     144 .. 0.87
   3 !   13.1   0.0   3.3e-05      0.15      27      76 .]    1094    1152 ..    1067    1152 .. 0.69
   4 ?    3.2   0.0      0.04   1.8e+02       8      76 .]    2546    2624 ..    2542    2624 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 9.7e-08
                   HHHHHHHSSTT..EEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C  1 evEsalvshpa..VaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76
                   e+E a ++ p+   a+aaV+       G+ l+ f   ++++   e+++k+ +++ l+ y++p+++v++delp+  sGK
     CCE29718.1 29 EIEHAALRTPGchGANAAVI-------GSNLILFCAVDSET--HEADVKDSCNSWLPRYMAPNEIVLIDELPRLPSGK 97
                   67777777777556777777.......67788888884333..36********************************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2
                    HHHHHHHHHHHT-TTTS-SEEEE-S---B-T CS
  AMP-binding_C  43 eeeLkahvrkelgpyavpkkvvfvdelpktr 73 
                     +eL++ v +e ++ ++ k v +v+++ kt 
     CCE29718.1 113 NAELESTVYQETADPKAAKIVQIVSDILKTG 143
                    5899***********9999999**9999985 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 3.3e-05
                     ---EEEEEE.-.--.---.......HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   27 ealvafVvl.k.dg.sea.......leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                     e l  f+++ + d+ + +       + + L+  ++++l++y+vp +++ ++++p+t sGK
     CCE29718.1 1094 EQLTTFYTPvRlDElE-QvtqvtldTHQILMGELKARLPSYMVPTYLIPIPQIPRTSSGK 1152
                     5677777763322231.22334556778899999*************************9 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.04
                     SSTTEEEEEEE-----TTS.---EEEEEE---..---..........HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C    8 shpaVaeaaVvGvpdevkG.ealvafVvlkdg..sea..........leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                     + p+++ aa v  +++  G  +lvaf    ++  +            l+ + +a +  +l+ y+ p +++++  +p+  + K
     CCE29718.1 2546 TIPEIQAAATVVLNHN--GkDVLVAFLAEVSDhlE-TslriadggidLASKARASCIGNLPGYMIPTYFIVLTYMPLSSNNK 2624
                     6788888886645665..55899999986333231.2345666777888888999999*********999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.71u 0.33s 00:00:02.04 Elapsed: 00:00:00.53
# Mc/sec: 24639.53
//
Query:       CCE29719.1  [L=318]
Description: non-ribosomal peptide synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-45  153.4   0.0    7.9e-45  153.2   0.0    1.0  1  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2   0.0   4.4e-49   7.9e-45       6     323 ..      27     317 ..      22     318 .] 0.84

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 4.4e-49
                  HHSTTSEEEEE..CCSTEEEEHHHHHHHHHHHHHHHHHT..TSSTT-E..EEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESE CS
  AMP-binding   6 aktpdkvalvd..sgegqtlTYreldervnrlAagLrsl..Gvkkgdr..VaillpnspewvvallailkaGavvvplnptltaeelayiledseakv 97 
                  a   d +a+ +  +++ ++++Y+  +++++rlA+ + +l  G+++++   V il+p++p+++v+llailk G++  pln + +a++l++il+d+ ak+
   CCE29719.1  27 ASSTDITAIKYvvGDKRTSYSYQYIHDASDRLARLIGALyaGLNQDTDiiVPILMPQCPHLYVSLLAILKFGGAFCPLNLDAPADRLKFILKDVSAKI 124
                  5567888887788899*****************9888533399777666789********************************************** PP

                  EEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH.HH CS
  AMP-binding  98 liatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk.le 194
                  ++  v ++ ++k+ ++ a      +++++d+d+++ e        +        + + ++p++lay++YTSG+TG+PKGV +sh+++++++ +++   
   CCE29719.1 125 VL--VTQQFANKIPSDCA-----VQIVIVDDDNPEVE------VTCH-------QGPIATPNSLAYVMYTSGSTGTPKGVGISHKAATQALLAHDkH- 201
                  **..87777676666555.....35778887665544......1122.......223579******************************9*98532. PP

                  HCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEES CS
  AMP-binding 195 trfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllgg 292
                     ++    ++l+++   +++ + +e++++l++Ga ++++++++ ld+  l + ++   v  + ++P+v+  ll+   ++      + + l+l+l+ g
   CCE29719.1 202 -IPEF---TKFLQFAAPTFDVFV-FETFFPLFRGAILIVAKREEMLDD--LPAIMRLMDVDACELTPTVAGSLLKT--RQ------SVPNLKLLLTIG 284
                  .2333...589***********7.*****************9999773..556777788***************96..34......7889******** PP

                  S-EBHHHHHHHHHHHTC..EEEEEEEEGGGSSE CS
  AMP-binding 293 eplspellrffralfge..evlegYGlTEttgv 323
                  e l + ++r+f     +   ++ +YG+TE+t++
   CCE29719.1 285 EMLKEPVIREFGGSDDGksILWAMYGPTEATIH 317
                  ***********877666779**********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2446.31
//
Query:       CCE29720.1  [L=607]
Description: related to L-ornithine N5-hydroxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.8e-107  358.4   0.0   4.7e-107  358.1   0.0    1.1  1  K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
    2.4e-06   27.0   0.0    0.00018   20.9   0.0    2.5  2  Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
      4e-06   26.3   0.1    0.00041   19.7   0.0    2.7  3  Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.1   0.0  7.9e-111  4.7e-107       3     342 .]     139     507 ..     137     507 .. 0.93

  Alignments for each domain:
  == domain 1  score: 358.1 bits;  conditional E-value: 7.9e-111
  K_oxygenase   3 lDligiGiGpsnLsLailleevk..........kelkalflerqpefaWhpgmllegaelqisfLkDlvtlrdPtspfsFlnYlkekgrLykFlnlet 90 
                  +Dli++G+Gp++L++a++++++           +  k+lf+e+q++faWh+gmll+ga++qisf+kDl+tlrdP+s+f+FlnYl++++rL++F+nl t
   CCE29720.1 139 YDLICVGFGPASLAVAVAMHDALasgrklladgSSPKVLFIEKQSQFAWHSGMLLPGAKMQISFVKDLATLRDPRSEFTFLNYLHRHNRLVDFTNLGT 236
                  9*******************99889999**99999*************************************************************** PP

  K_oxygenase  91 flpsRkefedYlrWvasqleeqvrfgeeveevepdeeeee...elltveskd.aegeeeelearnlvlgvGtepkiPevleklegkervvHsseyler 184
                  flp R e+edY+rW++s ++  v+fg++v +v+p+++++    + +tv+s++ a+g++++++ r+++++ G++p++P+ +++ +  +rv+Hss+y++ 
   CCE29720.1 237 FLPARIEYEDYMRWCSSFFTRLVQFGQQVVSVSPNAASKGpaaRSFTVRSEEvATGQTHTYRGRHILIAAGGQPSLPKSFHHKH--PRVIHSSQYANV 332
                  ************************************876666678*****999****************************855..9*********** PP

  K_oxygenase 185 kee....llakkriaVvGsGqSaaeifedllrrqkkvelklvtrsealeplddspfvneifsPeyvdyfyslpeekreallkeqkatnykgvdaelie 278
                  +++    + ++ r++VvG+GqSaaeif+++++r++++  +l++r+e l+p+ddspfvn +f+Pey+d+++ ++++ r++ll+e +atny++v+ elie
   CCE29720.1 333 IHKifpkTSTPCRVVVVGAGQSAAEIFNNVASRYPNSRTHLIMRQEFLRPSDDSPFVNCVFNPEYIDSMFPKSAKYRNNLLTEARATNYGVVRLELIE 430
                  *9899989999*************************************************************************************** PP

  K_oxygenase 279 elyeelyeqkvkg.....eerlrllpnrevesaeaegkgeveltlrnees.........geeetlevdavvlATGYrr 342
                  +lye++y+q+ +      ++++r++  ++++s+e +g+ +++l+l+n +           ++e +e+d v+ ATGYrr
   CCE29720.1 431 ALYERMYDQRRELgvdekRWPHRIMGGKQITSMEPHGE-TLQLSLQNVDAagvdgfvdaSHQEIIEADLVIAATGYRR 507
                  ********9776335554668****************6.9****99976422222221157899************96 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     3e-08   0.00018      75     180 ..     272     383 ..     139     393 .. 0.58
   2 !    3.6   0.0    0.0056        33     217     240 ..     483     508 ..     423     517 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3e-08
                  CEEEEESCEEEEETEEEC..TCEEEEEESEEEE---EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHH.HHHH.T- CS
                  xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxx.xx RF
  Pyr_redox_2  75 vvkidpgkkkvklekkke..gdeekiaydklvlAtGssprdl.gipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaa.lakl.gk 166
                  + +  p+++ ++++ ++   g+++++   ++++A G++p ++   +   + v+++ ++ +   ++  k     r+vvvG+G  + E+    ++++ ++
   CCE29720.1 272 AASKGPAARSFTVRSEEVatGQTHTYRGRHILIAAGGQPSLPkSFHHKHPRVIHSSQYANVIHKIFPKTSTpCRVVVVGAGQSAAEIFNNvASRYpNS 369
                  4444466666666555545588888888**************777777788888866666666665554446*************9876635666555 PP

                  EEEEEESSSSSSTT CS
                  xxxxxxxxxxxxxx RF
  Pyr_redox_2 167 evtlveardrllra 180
                  +++l+ + + l ++
   CCE29720.1 370 RTHLIMRQEFLRPS 383
                  56666654444344 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0056
                  E..EEETTSCE.EEESEEEE-S-EEES CS
                  x..xxxxxxxx.xxxxxxxxxxxxxxx RF
  Pyr_redox_2 217 e..vvledgee.idadlvvvavGvrps 240
                  +  v  + + e i+adlv+ a+G+r +
   CCE29720.1 483 DgfVDASHQ-EiIEADLVIAATGYRRD 508
                  231333334.359**********9976 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3      0.31   1.9e+03       1      19 [.     142     160 ..     142     164 .. 0.87
   2 !   19.7   0.0   6.9e-08   0.00041      77     204 ..     238     385 ..     208     411 .. 0.71
   3 !    3.4   0.0    0.0061        37     248     272 ..     487     510 ..     469     524 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.31
  Pyr_redox_3   1 iIiGaGPaGlaaaielkka 19 
                  i +G GPa la+a+++ +a
   CCE29720.1 142 ICVGFGPASLAVAVAMHDA 160
                  679***********99875 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 6.9e-08
  Pyr_redox_3  77 klsrkealeYlrevaksfelpiklfeeVesvkked.......egfevetsk......etyeAkkviiAtGefdkPnkln.ipGeeklvkhyskvke.f 159
                   ++r e+ +Y+r   + f   ++  ++V sv++++       ++f+v++++      +ty+ ++++iA+G   +P +++ ++ ++  v+h+s++ + +
   CCE29720.1 238 LPARIEYEDYMRWCSSFFTRLVQFGQQVVSVSPNAaskgpaaRSFTVRSEEvatgqtHTYRGRHILIAAGG--QPSLPKsFHHKHPRVIHSSQYANvI 333
                  57778888999999999988899999999998743122222256887665322221259******999987..5665541444445788988886514 PP

  Pyr_redox_3 160 hkyagq.....kvvViGgknSavDaAlelvrk..gaeVtvvtrgseiekees 204
                  hk++ +     +vvV+G++ Sa+++  +++++  +++ ++++r++ ++ +++
   CCE29720.1 334 HKIFPKtstpcRVVVVGAGQSAAEIFNNVASRypNSRTHLIMRQEFLRPSDD 385
                  555432233338*************999998888999999999998777664 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.0061
  Pyr_redox_3 248 ktedgkkvevkddvvlatGykpdls 272
                   +++ +++ + d v++atGy+ d++
   CCE29720.1 487 DASH-QEIIEADLVIAATGYRRDAH 510
                  3333.55666677777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 4066.97
//
Query:       CCE29721.1  [L=323]
Description: uncharacterized protein CPUR_03568 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-52  175.9   2.1    8.9e-51  172.0   0.3    2.2  2  But2      Ubiquitin 3 binding protein But2 C-terminal domain


Domain annotation for each model (and alignments):
>> But2  Ubiquitin 3 binding protein But2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.1    0.0045        81      66     114 ..     101     151 ..      86     172 .. 0.75
   2 !  172.0   0.3     5e-55   8.9e-51       1     142 []     173     313 ..     173     313 .. 0.99

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0045
        But2  66 tlsGsgk.fkfsklaapatesttynnkPavkeelgk.ttlspGnaytiasf 114
                 +++G+ + ++f++ a+   ++ +  +kP   +++g+ t ++ G++   ++ 
  CCE29721.1 101 SFHGQSNfYHFYQCATDNRNQWNIYQKPGAGTNCGQiTLVADGCHADCSQP 151
                 667777645777777755566666689*********889999999887765 PP

  == domain 2  score: 172.0 bits;  conditional E-value: 5e-55
        But2   1 efPhlIvpvssssPdkafgtsyngtvsstdvstifnFdipasaagktCslvflfptqsqletssytlsGsgkfkfsklaapatesttynnkPavkeelg 99 
                 efPhlI+pv++s+Pdka+gts++g+v+++  s+ifnFdip s+++ktC+l flfp+qsqletssytl G+gk++   l++ at+stt+nnkP   +  +
  CCE29721.1 173 EFPHLIIPVDKSNPDKAYGTSFFGEVTPS-RSSIFNFDIPVSDRDKTCTLIFLFPEQSQLETSSYTLYGEGKIHALALDRLATTSTTWNNKPGKLSAGH 270
                 7****************************.*****************************************************************9999 PP

        But2 100 kttlspGnaytiasfpCpagqavsyevssagdtsLeffqdynp 142
                 ++ ++pG++ +iasfpC  +q++++e+ s g+t+L++fqdynp
  CCE29721.1 271 TAIVRPGQSNSIASFPCSVNQTLTFELLSSGNTNLRYFQDYNP 313
                 999***************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2503.86
//
Query:       CCE29722.1  [L=338]
Description: uncharacterized protein CPUR_03569 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2713.77
//
Query:       CCE29723.1  [L=216]
Description: probable endo-1,4-beta-xylanase A precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-71  237.6  11.3    7.8e-71  237.4  11.3    1.0  1  Glyco_hydro_11  Glycosyl hydrolases family 11


Domain annotation for each model (and alignments):
>> Glyco_hydro_11  Glycosyl hydrolases family 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.4  11.3   4.4e-75   7.8e-71       3     178 .]      40     214 ..      38     214 .. 0.99

  Alignments for each domain:
  == domain 1  score: 237.4 bits;  conditional E-value: 4.4e-75
                     --EEEEEECCCSEEEEEC-TTTEEEEEEECSSEEEEEEEESS-TT-EEEEEEEEEECCEEEEEEEEEECTTTEEEEEEEEESSS-HHHHSEEEEE CS
  Glyco_hydro_11   3 gyyyslwkdgggsvtytngaggsysvswsnagnfvvgkGwnpgskrtikYsgtyspsgnsylavYGWtrnplvEYYivenwgsynpssgatkkgt 97 
                     g y s+w+d  g+++y+ gagg+y++sw+n gn+v+g+Gw+p s r+++Ysg+++ +gn yl+vYGWt nplvEYYiven+g+ynps+ga+++g+
      CCE29723.1  40 GLYSSYWADY-GNTRYSCGAGGHYDLSWGNGGNVVAGRGWKPASPRAVTYSGSWQCNGNCYLSVYGWTINPLVEYYIVENYGNYNPSAGAQRRGQ 133
                     67899****9.************************************************************************************ PP

                     EEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEESS--SCEEEEHHHHHHHHHHCT---SEECEEEEEEEEEEEEEEEEEE CS
  Glyco_hydro_11  98 vtsdgatYdiykstrvnqpsieGtatfqqywSvrqskrtsgtitvanhfkaWaslGlklgklnyqvlavEgyqssGsasit 178
                     vt+dg+ Ydiy st+ nqpsi Gt+tf+qywS+r++kr +gt+++  hf+aW+slG+ lg+++y+++a+Eg++ssGsasit
      CCE29723.1 134 VTADGSIYDIYISTQHNQPSILGTNTFHQYWSIRRNKRVGGTVSTGVHFNAWRSLGMPLGTYDYMIVATEGFRSSGSASIT 214
                     ******************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1608.97
//
Query:       CCE29724.1  [L=527]
Description: uncharacterized protein CPUR_03571 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3647.88
//
Query:       CCE29725.1  [L=465]
Description: uncharacterized protein CPUR_03572 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-28   98.5   0.0    4.4e-28   98.2   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0   2.5e-32   4.4e-28     159     443 ..     129     441 ..      42     457 .. 0.79

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 2.5e-32
                 SSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC......SCSSCSHHHHHHHHC. CS
        p450 159 garfdlledeklselvkaveelssllskssvqllllfp.llkylptkllrklkeavkklkdlldklieerretldsa......kksrrdfldalllak. 249
                 g++  + +++ ++++v++v + ++   + +  +  l p + + +  + +r++k++++++  ++++ ++ + ++ +           + d +  ++    
  CCE29725.1 129 GSKT-CRDERLNKSIVDFVGAAIRTQLTLRLVPTVLQPlIGRLVTIPNRRHWKSMCDVVMPTIKERLHSMTKQAEGCpgfeayV-PPEDYITWVIRLIi 225
                 3332.3678888899999998887666666666666675666777777777777777777777777666666666559999962.55666665555543 PP

                 TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHSHHH..HHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEE CS
        p450 250 kekkgesklsdeelaatvlellfaGvdTtsstlswaLy.eLaknPev..qeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRe 345
                  e++   +l+   + + +l + fa+++Tt  t    ++ +L ++Pe+   + lreEi+ + + +     + l +l  +d +i+E++Rl p++   ++Re
  CCE29725.1 226 AENRT-GELDPIKVSKRLLPIAFASIHTTVLTCHSLMLdLLSTDPEHllLDTLREEIEAHRPASGMWNKEALRSLVKVDSAIRESQRLNPLSSAIVTRE 323
                 23444.48************************9887776999****73369**********99899********************************* PP

                 SSS..CEEETT..EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS.................CTESSCTT--TTEEGGGS-TTHHHHHHHHH CS
        p450 346 vtk..dvvirg..ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg.................nskrksfaflPFGaGpRnCiGerlArmelk 423
                 +     ++ ++   ++ kGt v+v+  +++rd++ f+++  ++p R+ + ++                      s+++lPFG G+++C+G+ +   e+k
  CCE29725.1 324 IVGagGLHHPDlgWTLAKGTSVMVYNEGIQRDEDAFDDALLYKPFRYTSMQEtqdrdalgggrktlgqyTMTATSEQHLPFGHGRHACPGRFFVSYEIK 422
                 **97778888899*************************************999****************55589************************* PP

                 HHHHHHHHHEEEEESTSTSG CS
        p450 424 lflatlLqnFevelqpetdp 443
                 ++la+lL n+++++ ++ +p
  CCE29725.1 423 MLLAHLLTNYDIKMLDK-RP 441
                 *************9653.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3452.14
//
Query:       CCE29726.1  [L=863]
Description: related to ATP-dependent RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-31  109.3   0.0      4e-31  108.1   0.0    1.6  1  DEAD            DEAD/DEAH box helicase
    5.7e-27   94.3   0.1    2.7e-26   92.1   0.0    2.2  2  Helicase_C      Helicase conserved C-terminal domain
  ------ inclusion threshold ------
         10    5.6  10.1        1.1    8.7   3.6    2.2  2  CDK5_activator  Cyclin-dependent kinase 5 activator protein


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.0   6.7e-35     4e-31       1     174 [.     300     493 ..     300     495 .. 0.90

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 6.7e-35
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST...SEEEEEETTSSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid...lrvlliiggvaardqlskldn 96 
                 t+iQ+++ip+i+ ggdv+++a+TG    ++   p +++ +  ++ ++p a+i++PtreLa+q+ +++k +++ +      v++++gg + ++q+++l +
  CCE29726.1 300 TAIQQKSIPEIVAGGDVIGKAQTGIRQNACIRYPHYRTKT--NKPKAPLAVILSPTRELAKQIGEHIKAVCDGLPassPYVCVVTGGLSIQKQQRQL-Q 395
                 79********************************996665..599***************************744445788899*************.* PP

                 TCSEEEEEHHHHHHHH....HCTSSH..CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTT.................SEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxx....xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxx RF
        DEAD  97 gvdivvgtpgrlddll....stgkln..lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklq.................rqvivlSATlpkd 172
                 ++div+gtpgrl ++l    s   l+  + +++flV+DEadrl + g+ ++ + i+ +l+++t +   +                 rq++v+SAT+ kd
  CCE29726.1 396 KADIVIGTPGRLWEVLdgdaS---LQeqFTKIQFLVIDEADRLFKVGQFKEAEDIIGALDRQTPEAGYSdsssdagsdaggnksrdRQTLVFSATFDKD 491
                 **************9976542...33349******************************988888773359**************999********998 PP

                 HH CS
                 xx RF
        DEAD 173 vk 174
                 ++
  CCE29726.1 492 LQ 493
                 76 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.81   4.8e+03      14      30 ..     476     493 ..     474     507 .. 0.73
   2 !   92.1   0.0   4.5e-30   2.7e-26       2     110 ..     557     664 ..     556     665 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.81
                 TTTSEEEEEESSHH.HHH CS
  Helicase_C  14 eeggkilifvntid.rle 30 
                 ++++++l+f+ t d +l+
  CCE29726.1 476 SRDRQTLVFSATFDkDLQ 493
                 67899******9997554 PP

  == domain 2  score: 92.1 bits;  conditional E-value: 4.5e-30
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                 k ++l+  l l + g+++l+f+n+i+ + +++ ll++ + ++++lh+++ q+ r+++le+f + +  +L+atdva+rG+di++v+ V ++++pr  + y
  CCE29726.1 557 KDLYLYTVL-LLNPGRRTLVFTNSISAVRRLTPLLQNLNQNALPLHSQMIQKARLRSLEKFTASRNAILVATDVAARGLDIKDVDQVLHYHVPRAADAY 654
                 778899998.89**************9876455556669**********************998888******************************** PP

                 HHHHTTSSST CS
  Helicase_C 101 iqriGRtgRa 110
                 i+r+GRt+Ra
  CCE29726.1 655 IHRSGRTARA 664
                 *********8 PP

>> CDK5_activator  Cyclin-dependent kinase 5 activator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.4     0.086   5.1e+02     138     161 ..      32      55 ..       4      87 .. 0.52
   2 ?    8.7   3.6   0.00018       1.1      51     234 ..     177     371 ..     130     381 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.086
  CDK5_activator 138 knysklreefkredkvkvnnknsl 161
                      n+++++++ +r++k+k+++kn+ 
      CCE29726.1  32 GNKQNQQQQATRNEKTKSDTKNTK 55 
                     111222222222222222222221 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00018
  CDK5_activator  51 wkklsisrknkkklenkknksaelssakfkasllesslsssvsldknkniklsanvieehsqqklneaslstvkkqkPskvktttiiknysklre 145
                      k+ + +r  kkk  +  ++ +e+++++  a+++++s++s v + k+ + ++   + +   +   ++++ s++++ + ++ + +   ++++   e
      CCE29726.1 177 NKNKNKDRAPKKKKGPSDGEKGEAAKTDEVAEVVDQSAKSAVASSKKSKSQKLGDQKKVLTKSSSSSSVPSSSSQAQGNAFSALAALEDDKAEGE 271
                     34456666778888888999999999999999***999999877666664444444344444444434445555555555566666666666666 PP

  CDK5_activator 146 efkredkvkvnnknslvnknklaqkeelslslskhvikqvqassiqtkdnnq...........edeklssktprktviqastsELlkcLGiflhk 229
                     +    + v  n + slv    +    + + +++k +++ v +  +  k + +             +k+++      vi + t EL k +G+++  
      CCE29726.1 272 DLDMTEWVALNLSPSLVSAIAKLGFAKPTAIQQKSIPEIVAGGDVIGKAQTGirqnaciryphYRTKTNKPKAPLAVILSPTRELAKQIGEHIKA 366
                     666668888888888776654433333334444467776666666555555567676666653222222234455799999*************9 PP

  CDK5_activator 230 rCkrl 234
                      C  l
      CCE29726.1 367 VCDGL 371
                     99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1415  (0.0789224); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.47
# Mc/sec: 5531.01
//
Query:       CCE29727.1  [L=2153]
Description: related to myosin-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-37  127.4  27.2    3.4e-37  127.4  27.2   21.1 20  TPR_MLP1_2       TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9  24.0     0.025   4.5e+02      13     120 ..      62     172 ..      54     177 .. 0.89
   2 ?   -3.6  11.6      0.63   1.1e+04      59     119 ..     178     238 ..     166     239 .. 0.73
   3 ?   -1.2  21.2      0.11   1.9e+03       3     114 ..     185     299 ..     183     305 .. 0.70
   4 !    3.3  15.9    0.0044        79       5      89 ..     286     367 ..     283     369 .. 0.63
   5 ?   -3.2  17.6      0.47   8.5e+03      18     122 ..     407     514 ..     404     541 .. 0.75
   6 ?    1.1   6.8     0.021   3.8e+02       9      81 ..     568     638 ..     560     650 .. 0.61
   7 !    5.8   4.6   0.00074        13      54     118 ..     680     744 ..     676     751 .. 0.90
   8 ?   -5.9  21.7         1   1.8e+04       4     122 ..     704     829 ..     703     837 .. 0.70
   9 ?   -0.3  18.3      0.06   1.1e+03      27     116 ..     807     897 ..     804     899 .. 0.80
  10 !    7.4   0.6   0.00025       4.4      55      94 ..     896     935 ..     895     939 .. 0.92
  11 ?   -0.3  20.0     0.058     1e+03       8     111 ..     955    1058 ..     951    1070 .. 0.79
  12 !  127.4  27.2   1.9e-41   3.4e-37       2     128 ..    1069    1195 ..    1068    1196 .. 0.98
  13 ?   -4.2  16.4      0.91   1.6e+04      10      91 ..    1249    1336 ..    1232    1341 .. 0.53
  14 !   12.8  12.7   5.1e-06     0.091       4     112 ..    1340    1449 ..    1337    1453 .. 0.81
  15 !    5.2  14.8    0.0011        20      61     118 ..    1448    1508 ..    1443    1511 .. 0.69
  16 !    2.8   8.2    0.0062   1.1e+02      57     101 ..    1545    1589 ..    1527    1596 .. 0.57
  17 ?   -2.8  21.9      0.36   6.4e+03       2     114 ..    1546    1666 ..    1545    1672 .. 0.88
  18 ?   -7.2  16.5         1   1.8e+04      29      75 ..    1626    1678 ..    1621    1718 .. 0.41
  19 !    3.4   1.1    0.0041        73      74     109 ..    1785    1820 ..    1761    1843 .. 0.66
  20 ?   -7.2  21.7         1   1.8e+04       6      42 ..    1950    1986 ..    1940    2037 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.025
  TPR_MLP1_2  13 lkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleese...esweeqkeelekelsel 108
                 l++   ++e++ q+ +   ek  + ++ea qk ++e +k  +  +elq l++++++  ae+++l+++ e++++++ ++    es +++ ++l +el++ 
  CCE29727.1  62 LENAVRSSESRSQASKGTAEKALKDVEEARQKLKEEETKRQSMENELQVLKTKSSDHAAEVKSLNDKIETLQSSNRTNLsiiESHNKRDQTLTEELTKQ 160
                 677888999999999999******************************************************9999987233678889999******** PP

  TPR_MLP1_2 109 ekriedlneqNk 120
                  +r  +l+   +
  CCE29727.1 161 HQRNVELSREVT 172
                 ****99987655 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.63
  TPR_MLP1_2  59 lqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneqN 119
                  q+++ +ln+ k +  +lk+++e a+ + +  e++++++ ee  k  +e  +ri +l+  N
  CCE29727.1 178 EQNAKGQLNSSKYREDSLKQQLELARRNSDWLEQELKTKGEESLKYRKERGARIAELQREN 238
                 3567778888888888888888888888888888888888888888888888888888877 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.11
  TPR_MLP1_2   3 lksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYer.....elvkhaedv.kelqalreelnelkaeiaelkaeaesakaeleeseeswe 95 
                 l+s +   +slk++ e a+++   l+++l+++ e+  +  +   r     el+  +ed+  ++ al+   ++l++++  ++a+a++a  +l+++e + +
  CCE29727.1 185 LNSSKYREDSLKQQLELARRNSDWLEQELKTKGEESLKYRKE--RgariaELQRENEDArSQVDALKRSEQQLRERLDAMQAKADDALVKLQKQEGAFA 281
                 556666677777777777777777777777776665544442..1112337777666652578889999999999999999999999999999999999 PP

  TPR_MLP1_2  96 eqkeelekelselekried 114
                 ++ e++++el++  +r+ +
  CCE29727.1 282 STVESYKQELDDQ-RRLVE 299
                 9999999999885.44555 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.0044
  TPR_MLP1_2   5 sleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaelee 89 
                 s ++e+++ +   e +e+  +k++e ++  +++ ++ +++Ye+e+        el++ r+   e++++i++l+ae+++++a le+
  CCE29727.1 286 SYKQELDDQRRLVEMSEQLSTKHRERVRDLEAERERLKDNYENEIRRI---RLELEQERQTTTEMEERIRQLEAELDEVQARLEQ 367
                 445555555666666666667777777777777777777777777543...4466677777777777777777777777777766 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 0.47
  TPR_MLP1_2  18 eeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelse...lekrie 113
                 ++a ++l +++ +l  ++++ ++  +   + ++  ++ + e+q+l +e+++l++eia + +  ++  +e ++++++  + ++ l +  se   l++++ 
  CCE29727.1 407 TQAIEQLYQVKGQLAGEKRRNQQLSEELDNMIIALEAKAPEIQELQAESESLRDEIARMSELSQQSFEERDTARKAARKAESLLANAQSEakiLRTQLR 505
                 566777777888888888888888888888888888888888888888888888888888888888888888888888888777555544111556666 PP

  TPR_MLP1_2 114 dlneqNklL 122
                 dl +q ++L
  CCE29727.1 506 DLGTQIQML 514
                 776666555 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.021
  TPR_MLP1_2   9 eikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeae 81 
                 +iksl++++e++ +  ++l e++e++++ia++     ++     ++  +el+ + ee+ ++k+++++ k+e++
  CCE29727.1 568 DIKSLQAKNEDLMRITRELAEQMESEEAIAAKHRA--KEDHDRVEQLQRELEHMTEESRSIKNTMESYKTERD 638
                 67777777777777777777777777777776666..344444444445555555555555555555555555 PP

  == domain 7  score: 5.8 bits;  conditional E-value: 0.00074
  TPR_MLP1_2  54 edvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneq 118
                 + +++l++l +e+++ ++    +++++ +    l+ +++s+++++ +l+ e++   +r+e l++ 
  CCE29727.1 680 SLSEALRKLQSEYDNFRDAQDGVRKDLRKQIDLLSSEKNSLHTERIKLQGEVRLESERREMLQSN 744
                 56799************************************************999999998876 PP

  == domain 8  score: -5.9 bits;  conditional E-value: 1
  TPR_MLP1_2   4 ksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreel.......nelkaeiaelkaeaesak...aeleesee 92 
                 k l+++i+ l++ek+++ ++  klq +++ ++e+ +  q +Y    ++++e  +  qal e +       +++ +e+ e k  ++s +   a+l+++++
  CCE29727.1 704 KDLRKQIDLLSSEKNSLHTERIKLQGEVRLESERREMLQSNYVALQNENSELQRRSQALSETAakqdirtQQVAEELVESKGLLDSMRnetANLKAEKK 802
                 568889999999999999999999999999999999999999888888888888888888888666667766666666666666665511144555666 PP

  TPR_MLP1_2  93 sweeqkeelekelselekriedlneqNklL 122
                  w+  ++++ k+ ++l   ie+ n  N lL
  CCE29727.1 803 LWKDIQDRMSKDNESL---IEEKNRLNHLL 829
                 6666666666665555...45555555555 PP

  == domain 9  score: -0.3 bits;  conditional E-value: 0.06
  TPR_MLP1_2  27 lqedlekqaeiakeaqqkYerelvkhaedvke.lqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedln 116
                 +q+ + k  e++ e +++  + l  h +  +e   +  e+  +++++i +l+ e+ +a+++l++++e+ ++ + + e e +e++kr+++l 
  CCE29727.1 807 IQDRMSKDNESLIEEKNRLNHLLATHQSLENErTMTESEDRRKAQTRIDTLERELSEARKKLNQETEETKKLQLRKEFEAKESQKRVDELM 897
                 566666667777777777777777776655441445567789***********************************************96 PP

  == domain 10  score: 7.4 bits;  conditional E-value: 0.00025
  TPR_MLP1_2  55 dvkelqalreelnelkaeiaelkaeaesakaeleeseesw 94 
                  + +l+++ree+ ++++++  l+a++++++ el ++ee +
  CCE29727.1 896 LMSSLSQIREEHVSVRTTRDHLQARVDELTVELRNAEERL 935
                 5789********************************9975 PP

  == domain 11  score: -0.3 bits;  conditional E-value: 0.058
  TPR_MLP1_2    8 eeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeeleke 104 
                  e +++l++e ++++++++ l++dl     ++++a+ + e+      ++ ++l+++r   ++++ e+++l +e ++  +el+   e ++e+ ++  +e
  CCE29727.1  955 ERQQELETELHDLKNDISDLKRDLDLANTQLENAKAQAEQYREISQANEETLEDFRVSQEQYRLEMESLIEEKDTKIKELSMRVEDMSEELSRTNTE 1051
                  5678888888888888888888888888888888888887777777777888888888888888888888888888888888888888888888888 PP

  TPR_MLP1_2  105 lselekr 111 
                  ls+l+  
  CCE29727.1 1052 LSQLRDS 1058
                  8888765 PP

  == domain 12  score: 127.4 bits;  conditional E-value: 1.9e-41
  TPR_MLP1_2    2 elksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqk 98  
                  e+  le+e+k+lke+++++ ++ + +q+dl++qaeia++aqq+Ye+elvkhae++k +q+lr+++n lk+e a+l+aeaesak +l++s+ swe ++
  CCE29727.1 1069 EKFILEDELKRLKEDSARHMEATRFHQQDLRAQAEIASKAQQDYEKELVKHAEAAKLVQQLRTDYNALKNESATLRAEAESAKVTLAQSQGSWEDRR 1165
                  66789******************************************************************************************** PP

  TPR_MLP1_2   99 eelekelselekriedlneqNklLhdQlEs 128 
                  ++le+e++el++r+ed+n+qNklLh+Ql+ 
  CCE29727.1 1166 QQLEQEMAELTSRREDVNAQNKLLHQQLDG 1195
                  ****************************95 PP

  == domain 13  score: -4.2 bits;  conditional E-value: 0.91
  TPR_MLP1_2   10 ikslkeekeeaeaklqklqedl.....ekqaeiakeaqqkYerelvkhaedvkelqal...reelnelkaeiaelkaeaesakaeleese 91  
                   + +++e+ +++++++  q++l     +  +e++++aq    r  + h + +++l +l   re ++ l++e ++lk++  + ++ +ee e
  CCE29727.1 1249 YDLKSQESRRLQQQVEYTQSQLdearlKLDQERTQTAQG--GRATMAHQDLMEKLHELnlyRESSAALRNENSQLKDQMSEKNKLIEEME 1336
                  444444444444444444443300000344566666776..6777777777766655422256666666666666666666666555555 PP

  == domain 14  score: 12.8 bits;  conditional E-value: 5.1e-06
  TPR_MLP1_2    4 ksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvk.elqalreelnelkaeiaelkaeaesakaeleeseesweeqke 99  
                  + l++ei+ l ++k+ +e++++++qed    +++++    kY r      e++k ++++l ee n+l +  + l++++ +++++le+++++w++++ 
  CCE29727.1 1340 QPLQAEIEHLGTQKSYLEDEMKQIQEDRDRWQKRTEGILTKYGRVDPAEMEQLKtSITELQEERNKLLEGQKPLQEKVTELETTLETERSAWQTTRA 1436
                  669***************************************9954444444431456666666666666677888999999999999999999999 PP

  TPR_MLP1_2  100 elekelselekri 112 
                  ++ ++ +e  +++
  CCE29727.1 1437 KIVEQAKERSRKL 1449
                  9999998877765 PP

  == domain 15  score: 5.2 bits;  conditional E-value: 0.0011
  TPR_MLP1_2   61 alreelnelkaeiaelkaeaesakaeleesee...sweeqkeelekelselekriedlneq 118 
                  +l  e ne+ +++++l+++ ++++++l+ +++   +  ++k+ele++l+++++++++l +q
  CCE29727.1 1448 KLTGEKNEAVQRANQLQEQFDKTNEDLQGAQQlaeNAGREKTELEQQLESFKQQVDELRQQ 1508
                  4555667778888888888888888887666511144567888888888888888888887 PP

  == domain 16  score: 2.8 bits;  conditional E-value: 0.0062
  TPR_MLP1_2   57 kelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeel 101 
                  ++l+++r+el++++++   +++++e++++el+++ ++ +   ++l
  CCE29727.1 1545 EQLANIRQELEDVTTQKLGAEEQLEQLRSELQAAVSERDAATQKL 1589
                  455555555555555555555555555555555544444444443 PP

  == domain 17  score: -2.8 bits;  conditional E-value: 0.36
  TPR_MLP1_2    2 elksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreel........nelkaeiaelkaeaesakaelees 90  
                  +l++ ++e+++++++k  ae++l++l+++l++  ++  +a qk ++  +  + d++ + ++  +          +  +  + lk++  +a+a+ +e 
  CCE29727.1 1546 QLANIRQELEDVTTQKLGAEEQLEQLRSELQAAVSERDAATQKLQNVETTENGDTTMVDQAEPQQadsgapngLSDDSLQKALKEKIAAAEAKAAEY 1642
                  78999*****************************************999999999999999888768888866555566678999999999999999 PP

  TPR_MLP1_2   91 eesweeqkeelekelselekried 114 
                  e++ +e ++++++ ++e   r+ d
  CCE29727.1 1643 EQKASEVETKIQQTIKERSDRMRD 1666
                  999999999999999999998877 PP

  == domain 18  score: -7.2 bits;  conditional E-value: 1
  TPR_MLP1_2   29 edlekqaeiakeaqqkYerelvkhaedvkelqalreel......nelkaeiae 75  
                  + l+++ + a++    Ye+   + ++ +++  + r++       n+lk+ +a+
  CCE29727.1 1626 KALKEKIAAAEAKAAEYEQKASEVETKIQQTIKERSDRmrdtlnNKLKDSRAK 1678
                  44444444444444444444444444444333333322222222222222222 PP

  == domain 19  score: 3.4 bits;  conditional E-value: 0.0041
  TPR_MLP1_2   74 aelkaeaesakaeleeseesweeqkeelekelsele 109 
                  ++l ae+ + k++l+++ +s  eq + +e+++s l+
  CCE29727.1 1785 KKLDAEVAKIKTDLDTKVASAREQAQLMESKKSTLR 1820
                  345555555555555555555555555555555444 PP

  == domain 20  score: -7.2 bits;  conditional E-value: 1
  TPR_MLP1_2    6 leeeikslkeekeeaeaklqklqedlekqaeiakeaq 42  
                   ++++++ ++++++++++ q++q++ ++q++ a+ aq
  CCE29727.1 1950 QQQQQQQQQQQQQQQQQQRQQHQQQQQQQSQPAQPAQ 1986
                  2333333333444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      5145  (0.286965); expected 358.6 (0.02)
Passed bias filter:                      989  (0.055162); expected 358.6 (0.02)
Passed Vit filter:                       556  (0.0310112); expected 17.9 (0.001)
Passed Fwd filter:                       256  (0.0142785); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 10.22u 0.48s 00:00:10.70 Elapsed: 00:00:01.64
# Mc/sec: 3978.02
//
Query:       CCE29728.1  [L=255]
Description: uncharacterized protein CPUR_03575 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.009   14.6   3.0      0.014   14.0   3.0    1.3  1  Macoilin         Macoilin family
  ------ inclusion threshold ------
      0.018   15.4   2.3      0.018   15.4   2.3    1.5  2  EPL1             Enhancer of polycomb-like
       0.57    8.9   3.7       0.66    8.7   3.7    1.2  1  Presenilin       Presenilin
        1.2   10.2   4.1       0.39   11.7   0.2    2.3  3  DUF4834          Domain of unknown function (DUF4834)
        2.1    8.6   8.3        2.5    8.3   3.7    2.2  2  DUF4770          Domain of unknown function (DUF4770)
        2.8    8.1   9.6        4.9    7.3   9.6    1.3  1  Osteoregulin     Osteoregulin
        4.4    7.3   5.7         16    5.5   0.1    2.2  2  Peptidase_S49_N  Peptidase family S49 N-terminal


Domain annotation for each model (and alignments):
>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   3.0   5.5e-06     0.014     215     349 ..      99     238 ..      78     254 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.5e-06
    Macoilin 215 eaeeqlaaakelvevdpvalsknnhslnkk...dsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymenkskskrlsk..sessgses 308
                 + +e + a+++l    pv+ ++ +h l k    +++++  +l++++++++a+ ++s sk++h+h+++++s+ + + +++  + +++ +   + ss+   
  CCE29728.1  99 DEKEGTRASRKLF-KAPVVWDELGHGLWKVlsaTEQKRQQQLQQQQQQHQAQLQKSPSKHHHHHHHRHHSHSHTHTHHQAPIIEEPTKPvcWRSSSFGG 196
                 4445555666666.3456666666666555433344555677777777777777788877777776666666666666666655544430033333333 PP

    Macoilin 309 ellvees.vkskssssssssnknskkasagsagssnssskkh 349
                  + + +s ++s+ sss  +s+ +  +a ++   s +ss+ +h
  CCE29728.1 197 YVEFPHSiCNSRRSSSRRTSEDSCATAISQDCMSLSSSPGRH 238
                 444444414444445555555566666666777778888776 PP

>> EPL1  Enhancer of polycomb-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.8   7.2e+03      45      45 ..      45      45 ..      21      78 .. 0.59
   2 ?   15.4   2.3   7.2e-06     0.018      29     100 ..     131     204 ..     114     229 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.8
        EPL1 45 v 45
                +
  CCE29728.1 45 Q 45
                1 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 7.2e-06
        EPL1  29 eeiseknsnkensqqavetgvdkkeenekhqviaaakkkesssasskeslkkeelkLpkP.........sfreferppssy 100
                 +e++++++ ++++qq++++ +++ ++  +h     ++ +++s++++  +++++  ++ +P         sf  + + p+s 
  CCE29728.1 131 TEQKRQQQLQQQQQQHQAQLQKSPSKHHHH-----HHHRHHSHSHT--HTHHQAPIIEEPtkpvcwrssSFGGYVEFPHSI 204
                 333333333333445555555554444444.....44444444444..678899999999888866666444444444444 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.7   0.00026      0.66     270     313 ..      75     170 ..       5     226 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00026
  Presenilin 270 e............................................................seeeseeesseaessaeesseekeseessesseeeeee 308
                 +                                                            +        ++ ++++++++++ ++++s++++++++++
  CCE29728.1  75 QmdqitvvydavptmeelesfgaldekegtrasrklfkapvvwdelghglwkvlsateqkrQ--------QQLQQQQQQHQAQLQKSPSKHHHHHHHRH 165
                 14446666666666666666666666666666667777777777777777777554322211........11111111111111111111111111111 PP

  Presenilin 309 eeeee 313
                 +++++
  CCE29728.1 166 HSHSH 170
                 11111 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.5   3.8e+03      77      81 ..      41      45 ..      18      65 .. 0.50
   2 ?   11.7   0.2   0.00015      0.39      40      75 ..     133     168 ..      79     201 .. 0.58
   3 ?   -3.7   0.0         7   1.8e+04      57      63 ..     211     217 ..     204     227 .. 0.44

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.5
     DUF4834 77 keakr 81
                +e+++
  CCE29728.1 41 EEQRQ 45
                11111 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00015
     DUF4834  40 ksaqkqfgnstnsnqqksqsrsetkeegeiieeers 75 
                 ++ q+q +++++++q++ q++++++++++ + ++++
  CCE29728.1 133 QKRQQQLQQQQQQHQAQLQKSPSKHHHHHHHRHHSH 168
                 122222222222222222212111111111111111 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 7
     DUF4834  57 sqsrset 63 
                 s++r+++
  CCE29728.1 211 SSRRTSE 217
                 2222222 PP

>> DUF4770  Domain of unknown function (DUF4770)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.049   1.3e+02     115     154 ..      18      55 ..       3      94 .. 0.63
   2 ?    8.3   3.7   0.00097       2.5      77     138 ..     131     195 ..     122     219 .. 0.52

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.049
     DUF4770 115 nkkklspYfekqvrpkttrskkfsskppelkvsfpeypke 154
                  +++ +p+fe + ++++  +++++++++  k+ f+  +++
  CCE29728.1  18 MRHHSTPFFEFPHKKRK--QRRMLEEEQRQKALFEAEEES 55 
                 33444466665555552..344444455555545544433 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00097
     DUF4770  77 peeskker...kkqekkkkkrlklkkkkekkrkekekkkkknkkklspYfekqvrpkttrskkfs 138
                  e++++++   ++q+++++ +++ +k+++++++++++++++++++ +p +e++ +p  +rs+ f 
  CCE29728.1 131 TEQKRQQQlqqQQQQHQAQLQKSPSKHHHHHHHRHHSHSHTHTHHQAPIIEEPTKPVCWRSSSFG 195
                 44333332000222222222333333333344444444444455555999999999988777665 PP

>> Osteoregulin  Osteoregulin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.6    0.0019       4.9      90     130 ..     133     173 ..     123     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0019
  Osteoregulin  90 yakasskdkknqqrdsqaqnsPvksKsthriqrntdylkql 130
                   + ++++ ++++qq+++q q+sP k  + h+ ++  +  ++ 
    CCE29728.1 133 QKRQQQLQQQQQQHQAQLQKSPSKHHHHHHHRHHSHSHTHT 173
                   4445555678889999*****************99998885 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0063        16      70     124 ..      32      84 ..      17     107 .. 0.64
   2 ?    3.2   2.1     0.032        81      66      91 ..     132     157 ..     119     184 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0063
  Peptidase_S49_N  70 aekkekk.eekeekkaekkkakeeeekkrvfvldFkGdikAsevesLreeitavLs 124
                      ++k+++  ee +++ka  ++++e+++++  +++dF   ++Ase ++  ++it v +
       CCE29728.1  32 KRKQRRMlEEEQRQKALFEAEEESRSRAWDYIVDF---LQASEWSDQMDQITVVYD 84 
                      1222222022222222233444466677779***9...788888888888887765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.032
  Peptidase_S49_N  66 elkaaekkekkeekeekkaekkkake 91 
                      e+k++++ ++++++++++ +k+ +k+
       CCE29728.1 132 EQKRQQQLQQQQQQHQAQLQKSPSKH 157
                      33333333333333333222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3086  (0.172123); expected 358.6 (0.02)
Passed bias filter:                      965  (0.0538234); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 2029.44
//
Query:       CCE29729.1  [L=160]
Description: uncharacterized protein CPUR_03576 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-20   71.9   0.1    6.3e-20   71.4   0.1    1.2  1  Hce2             Pathogen effector; putative necrosis-inducin
  ------ inclusion threshold ------
      0.072   12.9   0.0       0.11   12.4   0.0    1.2  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP


Domain annotation for each model (and alignments):
>> Hce2  Pathogen effector; putative necrosis-inducing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.1     7e-24   6.3e-20       1     102 []      44     143 ..      44     143 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 7e-24
        Hce2   1 kCgessfvdqtsaasPlvsdCaalidniasdngtWtvsaaekkkqrelvsygtCafgvraaaktstegnvvvGnqDiadlirdsikkfakggkvgaeGe 99 
                 +Cg+s+fv++t+ + +++++Ca+l++++ s+ngt+ +++++ +  ++++ +++Ca+gv++a++++ ++   +G+qD + l+ +s+++f++g++++++G+
  CCE29729.1  44 TCGTSTFVESTNLDPANWRECASLYSSWMSQNGTFYLRNVDATGFTPILRTKDCALGVQPADASKRSF--NIGDQDLKMLLATSLQQFSEGTNLRVSGT 140
                 6***************************************99988****************9997766..67*************************** PP

        Hce2 100 mkC 102
                 +kC
  CCE29729.1 141 VKC 143
                 *** PP

>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.2e-05      0.11      71     126 ..      44     100 ..      21     101 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.2e-05
  CPSase_sm_chain  71 ikvaglvvrelseepsnwraeesL.sewlkeekipgisgvDTRaLtkklrekgamkg 126
                      +  ++  v++++ +p nwr   sL s+w+++++   + +vD+   t  lr+k+  +g
       CCE29729.1  44 TCGTSTFVESTNLDPANWRECASLySSWMSQNGTFYLRNVDATGFTPILRTKDCALG 100
                      344456678888899***999987478************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1228.70
//
Query:       CCE29730.1  [L=342]
Description: uncharacterized protein CPUR_03577 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-32  113.0   0.0    2.3e-32  112.7   0.0    1.1  1  NACHT_N   N-terminal domain of NWD NACHT-NTPase


Domain annotation for each model (and alignments):
>> NACHT_N  N-terminal domain of NWD NACHT-NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.0   1.3e-36   2.3e-32       2     216 ..      85     298 ..      84     303 .. 0.85

  Alignments for each domain:
  == domain 1  score: 112.7 bits;  conditional E-value: 1.3e-36
     NACHT_N   2 rLWdrAYdslkes..eaelvkeYekilseeeekesskkeeeseekeeeseeekrqeqlkrlvekglkrvekkkkakegiaeaaevvlavkdlideavka 98 
                 +LW++AY++l+ +   a lv +Ye+i+s+e    ++ k    +++   +++e+r   l+++  +gl++   ++ +  + + a +++l+++d ++ + + 
  CCE29730.1  85 DLWNAAYNALRDDrrCAGLVVAYENIISQEL--PDHLKMGGLNSSFRGKSAEERLSLLQEIAAAGLNKRRGSS-TSPADDLAKQILLSARDQVGRVASE 180
                 69**********98889**********7444..44444555566777888999*************8865544.34444557799************** PP

     NACHT_N  99 speaalaWagvclvleiltnpvtaakanreGiayVvsrmewYveLeelllkensieesesglr..eelekklvdLYkklLeyqiksVcryyrnqllvll 195
                  + a +aW+g+c+  ++l+ ++  + +  +G+ayVv r+ wY+++++ll +++ ++++e+ ++  ++ ++ l++LY+k+Le+++++Vc+       + +
  CCE29730.1 181 YDAAFVAWTGLCTLTPLLLDAIVVRPSFGNGLAYVVGRIPWYMHVAQLL-DARCWKDDERFRKtlQNTRDTLIKLYRKVLEFEMNCVCATASA-WNAAA 277
                 ********************************************97655.56666666565556999**********************9955.56789 PP

     NACHT_N 196 rdlvklddWdgelkkikeaEe 216
                 r++v +++ d+ +++ike +e
  CCE29730.1 278 RNVVGWNTIDQLMDSIKELDE 298
                 *****************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2661.75
//
Query:       CCE29731.1  [L=68]
Description: uncharacterized protein CPUR_03578 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        2.4    7.5   7.7        2.4    7.5   7.7    1.0  1  SDA1         SDA1
        2.9    6.8   5.4        3.2    6.7   5.4    1.0  1  Pes-10       Pes-10


Domain annotation for each model (and alignments):
>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   7.7   0.00027       2.4      77     127 ..      14      63 ..       4      68 .] 0.60

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00027
        SDA1  77 ekwkeeekkekreeeeedsddeddeedwevesddds...eedseggwidvesde 127
                 ++w++e++++++  +e++   e +  ++e+++d+ +   e+d +g w +v  d 
  CCE29731.1  14 ADWQDEDRDKDK--DEDE--GEGEGGGDEADEDSIEpsfESDRSGIWSSVRADA 63 
                 456666665554..3333..22233334444444447799999999*9999886 PP

>> Pes-10  Pes-10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.4   0.00035       3.2     169     210 ..      17      57 ..       9      65 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00035
      Pes-10 169 vdEdleeeeeedeedseedd.ddiededeedesssstdsgies 210
                  dEd +++++ede   e +   d  ded  + s++s+ sgi s
  CCE29731.1  17 QDEDRDKDKDEDE--GEGEGgGDEADEDSIEPSFESDRSGIWS 57 
                 6888888888887..55555578889**************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 555.76
//
Query:       CCE29732.1  [L=175]
Description: uncharacterized protein CPUR_03579 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-11   42.9   5.4    8.6e-11   42.6   5.4    1.2  1  Hemerythrin  Hemerythrin HHE cation binding domain


Domain annotation for each model (and alignments):
>> Hemerythrin  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   5.4   4.8e-15   8.6e-11       3     123 ..      27     152 ..      25     158 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 4.8e-15
                  HHHHHHHHHHHHHHHHHHHHHHHH.HHHHCCCHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH..CCC.HHHHHHHHHHHHHHHHHHHHHHHHCHTCG CS
  Hemerythrin   3 vealdeeHralrallerlralada.aaevhgalrklaelldelvdeleaHhaaEEellfPlle.drpggravldvlereHdeirelleelrellkgle 98 
                  +e++++ H+++r+  + +  +a++    +h   ++++  + +lvde+  Hh+ EE+++fP l+ + p+++++  +l ++H++i++ l +++ ++++  
   CCE29732.1  27 AETMEQYHDYFRRNYDFIYNAARTsRRPRHLTEEEFLLSAISLVDEINGHHTTEETHIFPHLAtRMPEFDSRRGQLVQQHAVIHRGLVDFEDYVQDCL 124
                  789*************9988888845555544999999999**************************************************9999999 PP

                  ...GSTCHHHHHHHHHHHHHHHHHHHHH CS
  Hemerythrin  99 ...epsaaafaelleeladllreHiakE 123
                       + + ++e+++   ++l +H+++E
   CCE29732.1 125 ngqVLEMDVLREKMDSWGSALMQHMDEE 152
                  666777777777*************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1444.71
//
Query:       CCE29733.1  [L=335]
Description: uncharacterized protein CPUR_03580 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.27   10.7   5.1        4.5    6.7   0.0    2.7  3  PEX11     Peroxisomal biogenesis factor 11 (PEX11)
       0.48    9.4   0.0       0.48    9.4   0.0    1.7  2  TMEM171   Transmembrane protein family 171


Domain annotation for each model (and alignments):
>> PEX11  Peroxisomal biogenesis factor 11 (PEX11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2    0.0011       9.9       1      45 [.      47      90 ..      47      98 .. 0.80
   2 ?   -1.3   0.1      0.13   1.2e+03      40      75 ..     121     156 ..     115     164 .. 0.78
   3 ?    6.7   0.0    0.0005       4.5      93     163 ..     198     270 ..     171     293 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0011
       PEX11  1 ldklvkflaqtqgrDKllRalqYasrllayllerkgsskelvkkl 45
                l++l + ++++ g + +l +++Ya+rl + lle + ss +  + +
  CCE29733.1 47 LTHLSQCMQTRTGAETVLLFACYATRLSGSLLE-TLSSAAIRQSA 90
                689999**********************88665.54666555555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.13
       PEX11  40 elvkklkklesqfslsRKllRlgkflehlqaaakll 75 
                 +l ++lk+l+  +s +R++ Rl   l    aa+kl+
  CCE29733.1 121 QLGARLKALSGLISETRTMARLWGLLGLYFAAKKLV 156
                 567899999999999999999987777766666665 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0005
       PEX11  93 lgyalYlllDhvlwlkklgllkvknak..klsrlssrfwlfglvlslvrdlyelrllqekekklkkekkekee 163
                 ++  ++ + ++v +l++ ++l+    +  +l  ls r+w + +++  +r l e ++ +e+ekk +  +k k +
  CCE29733.1 198 ASLLVFQATENVSFLSSKKVLPLAGPSqgRLALLSVRAWGLYVAMEAARLLVERSRKKEEEKKEEGGEKGKVK 270
                 345678899***********997666557*********************99999999888877665433222 PP

>> TMEM171  Transmembrane protein family 171
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.2   3.4       1.4   1.3e+04     220     253 ..      16      32 ..       6      48 .. 0.54
   2 ?    9.4   0.0   5.3e-05      0.48      34      93 ..     194     258 ..     188     263 .. 0.81

  Alignments for each domain:
  == domain 1  score: -5.2 bits;  conditional E-value: 1.4
     TMEM171 220 PPPPPpyfaessasavtkspgassllasenPPsy 253
                  PPPP+ ++                 ++++P s 
  CCE29733.1  16 SPPPPSSLP-----------------PTDKPVSL 32 
                 344444444.................44444333 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 5.3e-05
     TMEM171  34 vGvllsifgfqaCqyetlsdCsmvLkiaGPslavvGlgav.....ilarsrarlqlrerqlqgeq 93 
                    l s++ fqa ++ ++ + ++vL +aGPs   + l +v      +a   arl ++++++++e+
  CCE29733.1 194 YAQLASLLVFQATENVSFLSSKKVLPLAGPSQGRLALLSVrawglYVAMEAARLLVERSRKKEEE 258
                 5568899***********************98888887764444368999999999988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2655.08
//
Query:       CCE29734.1  [L=864]
Description: related to translation initiation factor eIF3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.6e-175  582.8  25.1   6.6e-175  582.8  25.1    3.0  2  eIF-3c_N        Eukaryotic translation initiation factor 3 su
    1.4e-13   51.2   0.5    4.9e-12   46.3   0.0    3.0  2  PCI             PCI domain
  ------ inclusion threshold ------
      0.036   14.2   1.6       0.13   12.3   0.8    2.4  2  DUF1617         Protein of unknown function (DUF1617)
       0.16   12.4   1.7       0.65   10.4   0.6    2.6  2  Streptin-Immun  Lantibiotic streptin immunity protein


Domain annotation for each model (and alignments):
>> eIF-3c_N  Eukaryotic translation initiation factor 3 subunit 8 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.1   8.7         4   1.8e+04     128     164 ..      27      56 ..      12      66 .. 0.49
   2 !  582.8  25.1  1.5e-178  6.6e-175       2     588 ..      66     632 ..      65     636 .. 0.93

  Alignments for each domain:
  == domain 1  score: -7.1 bits;  conditional E-value: 4
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....... CS
    eIF-3c_N 128 ikkyredPeeeeeeeeedededdegedeededeksvk 164
                  k+ r+  ee++        +d+++ +++d++++s++
  CCE29734.1  27 EKRQRQGAEEDDS-------DDSDDMNDSDDSDDSSS 56 
                 3333333333333.......33333344444443333 PP

  == domain 2  score: 582.8 bits;  conditional E-value: 1.5e-178
                 ----TT---S--S-S-----SSGGGGTTTS-SSTTTTTTT---SSSHHHHHHHHHHH-HHHHHH..HH--S--XXXXXXXXXXXXXXXXX....XX.XX CS
    eIF-3c_N   2 klkkesseessdeedtkrVVksaKdKrfeeltsiiktiknakkikdlvklleeFdklnkalekaksqkenvktPrlyikvlaeledflnelwedke.ak 99 
                 +l++ +s+ +s+ee+++  VksaKdKr++el   ik i n +k+ d++ ++ eFdkl++++++   +++ +ktP+ yik++aeledf+ne+++ ++ + 
  CCE29734.1  66 FLRDAASDSESEEEEVRAKVKSAKDKRLDELDASIKLIENGQKNGDWTLISAEFDKLSRQVTR---MQDGQKTPKPYIKTIAELEDFMNEALAKQKvTP 161
                 6789999999*****************************************************...6899********************998655267 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......................................... CS
    eIF-3c_N 100 kklsknnakalntlrQkvkKynkqfeddikkyredPeeeeeeeeedededdegedeededeksvkateavkkaseskvekeeeedeeteeeklskkekk 198
                 kk+++  a+ ln+++Qk+kK +k+++ +i+ y+ d + ++e e+++ +  ++ ++     e++v ++e+++                +  ++++k    
  CCE29734.1 162 KKMNATQARGLNAVKQKIKKTSKEYQTQIDAYKADKDAFMESEDDEPEPVAKPKKVVR-IEEDVATAEELTD---------------DGFATVGK---- 240
                 9**********************************99999877666665555555553.3334433333333...............22333333.... PP

                 .....XXXXXXXXXHHHHHHHHHHHHHHTSSSXXHHHHHHHHHHHHHHXSTCCHHHHHHHHHHHHHHHHCCHTSSSXXHHHHHHHHHHHHHHHHHHHHC CS
    eIF-3c_N 199 ekvkmfekkeeitvevvikklkeilsaRgkkttdrseqielleeLlkiaeekelkvkikfsiisarfdvnaklseymkievwkkaleeinslldilvan 297
                           + t e ++k+l+ il++Rgkk+tdr eqi+ +e+L++ia+++++++++ ++i+sarfd++a++++ m++e+wk+a +e+++ll +l++n
  CCE29734.1 241 -----GGRTLQYTPESIFKHLRGILESRGKKNTDRLEQIKVMEKLSEIANTPYQQIRVLLAIVSARFDLSAGTTNVMPLEHWKAAEKELSTLLTVLDQN 334
                 .....345567899************************************************************************************* PP

                 TTGCCXTTTXSSSXTTTTTTXXXXXXCCCCCSHHHHHHHHHHHHHHHHHHHSXTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCXXT.......CHHHHH CS
    eIF-3c_N 298 anivvseevadeseeledetkedadgvirvrGsilafverlddEfvkslqniDpHsndYverLkdEksllaliervqkYlErtgds.......kevarv 389
                 ++ vv+e+v++ +++++    +  ++ i+v Gs++++verlddE+v+slq iDpH+++Y+erL+dE+ l+++i r q Y Er  ++         v r+
  CCE29734.1 335 QDYVVVENVEEWDDDEKPPSLQPGEKYIKVAGSVVSYVERLDDELVRSLQSIDPHTSEYIERLQDESALYNIIFRGQLYYERLRTDatldipqDSVNRI 433
                 *********999999877777789999*******************************************************9999999***999**** PP

                 HHHHHHTTTTSXHHHHHHHHHHCHHCHHSXSSXHHCCTTXTTHHHHHHHHHHHHCTTSSXHHHHHHHHHHHHHHHHHHSXHHHHHHHHHHHXXSHHHHC CS
    eIF-3c_N 390 ylrriehiYYKfeevieaeeeslissfikvkekskekeataessdalmdkLckliykddeerirtrAiLchiyhhAlhdnfvkArDllLmShlQdniqh 488
                 ++rr+eh+Y+K+ +v++  ee+  ++     + + + +a+++++++l++ Lc++++++ e  ir+rA+L ++y+ Alh +++kArD++LmShlQd i +
  CCE29734.1 434 VMRRLEHVYFKPAQVVKTLEETCAKAAGDKVDSVITPRAKSQEANDLVNILCNYLFNNSEGIIRARAMLSQVYFLALHGEYYKARDMMLMSHLQDTIPN 532
                 *************************************************************************************************** PP

                 SSSCHHHHHHHHHHHHHHHHHHTTXHHHHHHHHHHHHTXTTHHHHTTXXXHHHHHHHHXSHHHHHHHHTTXXCCCXXXHHHHHHHHHHHHHHHHHHHHH CS
    eIF-3c_N 489 aDistqiLyNRtmvqlGlcAFrqglikeahqaLsdllstgrvkElLgQgvlqrrqhektaeqekierrrqlPyHmhiNleLlecVyLvcamLlEiPama 587
                 +D++ qiLyNRt+vq+GlcAFr+gl+ +a+++L+++  +gr kElL+Qgv+ +r+++ ++eqe++e++rqlP+HmhiNleLlecVyL+c+mLlEiP +a
  CCE29734.1 533 FDVQSQILYNRTLVQVGLCAFRKGLVYDAQNTLQEICGSGRQKELLAQGVMMQRYNQVSPEQERLEKQRQLPFHMHINLELLECVYLTCSMLLEIPLLA 631
                 ************************************************************************************************999 PP

                 H CS
    eIF-3c_N 588 a 588
                  
  CCE29734.1 632 Q 632
                 6 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.082   3.7e+02      29      83 ..     384     436 ..     323     444 .. 0.79
   2 !   46.3   0.0   1.1e-15   4.9e-12       2     105 .]     647     776 ..     637     776 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.082
                 HHHHTTHHHHHHHHHHHHHHHHHHHHHH...CESEEEHHHHHHHHTSSHHHHHHHHHH CS
         PCI  29 lladdglaqllesLekkvrerllrqvsk...iyssislerlaklldlsvdevEkilvk 83 
                 + +d+++++++e+L+++  + ++  +++   +y++++ +    +ld+++d v +i+++
  CCE29734.1 384 QSIDPHTSEYIERLQDESALYNI--IFRgqlYYERLRTD---ATLDIPQDSVNRIVMR 436
                 56789999999999998888888..55545677777665...5788888999999886 PP

  == domain 2  score: 46.3 bits;  conditional E-value: 1.1e-15
                 HHHHHHHHHHHTSHHHHHHHHHHH......................HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH....CESEEEHHHHHHHHTSSH CS
         PCI   2 sysdllkalrsgnlsgfseelkdl......................eeelladdglaqllesLekkvrerllrqvsk....iyssislerlaklldlsv 74 
                 +y+++l+  +++ ++g++e+ +d+                       + +   ++ +++ ++L k+++e+ lr++ +    +y ++ le+l+++++l+ 
  CCE29734.1 647 TYRRMLEYHERQIFTGPPENTRDHvmqaskalaagewkkattfihsIKIWELMPNAEDIKSMLSKQIQEEGLRTYLFtyapFYDTLALETLSSMFELDI 745
                 6899999999999999999999998888888887777765555444344444455555**************88888********************** PP

                 HHHHHHHHHHHHTTSSSEEEETTTTEEEECS CS
         PCI  75 devEkilvklIrdgeirakidqesgivvfkk 105
                  ++  i++k+I+++e++a++dq++  v+f+k
  CCE29734.1 746 TKAGAIVSKMISHEELAASLDQVTNNVIFRK 776
                 *************************999976 PP

>> DUF1617  Protein of unknown function (DUF1617)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.8   2.9e-05      0.13      15      95 ..     152     234 ..     141     248 .. 0.76
   2 ?   -3.9   0.0       3.1   1.4e+04      78      92 ..     471     485 ..     463     497 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.9e-05
     DUF1617  15 rvldkikvtnmranrgrakllakvvdkikeyakdetdlidlyaakdkddkfvidehknikladpakldelnd...llneladee 95 
                   l k kvt  + n  +a+ l  v +kik+ +k+    id y a dkd  +  ++     +a p k+  +++     +el+d+ 
  CCE29734.1 152 EALAKQKVTPKKMNATQARGLNAVKQKIKKTSKEYQTQIDAYKA-DKDAFMESEDDEPEPVAKPKKVVRIEEdvaTAEELTDDG 234
                 57899************************************965.788766666666677888888766554111445666664 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.1
     DUF1617  78 pakldelndllnela 92 
                  ak +e ndl+n l+
  CCE29734.1 471 RAKSQEANDLVNILC 485
                 578888889888775 PP

>> Streptin-Immun  Lantibiotic streptin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6   0.00014      0.65      32      76 ..     148     194 ..     139     199 .. 0.86
   2 ?   -2.4   0.0       1.4   6.5e+03      36      74 ..     676     715 ..     672     719 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
  Streptin-Immun  32 deetrrlakydf..sklnltesvtleqiekeieklqnelskkideye 76 
                     d  +  lak ++  +k+n t++  l+ ++++i+k+ +e +++id y 
      CCE29734.1 148 DFMNEALAKQKVtpKKMNATQARGLNAVKQKIKKTSKEYQTQIDAYK 194
                     666777887765337******************************96 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
  Streptin-Immun  36 rrlakydfskl.nltesvtleqiekeieklqnelskkide 74 
                     + la  +++k   + +s+++ ++  + e ++  lsk+i+e
      CCE29734.1 676 KALAAGEWKKAtTFIHSIKIWELMPNAEDIKSMLSKQIQE 715
                     6666667766414678999999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1340  (0.0747392); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.42
# Mc/sec: 6183.34
//
Query:       CCE29735.1  [L=118]
Description: related to iron transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-10   38.8   0.0    3.3e-07   30.5   0.0    2.0  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.8e-11   3.3e-07      22     110 ..       6     111 ..       1     112 [. 0.85

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.8e-11
                  EC...EEEEEECCTSCCGGS.TT.EEEEEEEEESSTS......................TTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEE CS
  Fe-S_biosyn  22 ke...lrLdvddgggpyskggCsiggkyslvlvdeed......................eeydevlesnggkvyvksyslvfldeglvldfvedlgtl 94 
                  +    lr+ v+ gg       C+ g++y + lv+ +                        e +++ +s + +++ +  sl +l +g ++df+++l ++
   CCE29735.1   6 NAnlaLRIQVESGG-------CH-GFQYLMSLVTIPAkdtaeystvvndddsifqfaqdGEGSASSSSTDARIILDGPSLDLL-KGSKVDFTTELIGS 94 
                  22455888888888.......*9.999999999844445789999999999999999888888999999**************.9************* PP

                  EEE.EETCCEEEEEEEE CS
  Fe-S_biosyn  95 gLk.sdngilddnvglg 110
                  ++k  dn+++++++g+g
   CCE29735.1  95 QFKiVDNPYATSSCGCG 111
                  ***99***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 908.18
//
Query:       CCE29736.1  [L=249]
Description: probable 60s ribosomal protein L7 subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-25   88.9  15.2    3.1e-25   88.2  15.2    1.4  1  Ribosomal_L30_N  Ribosomal L30 N-terminal domain
    6.1e-20   70.9   1.4    6.1e-20   70.9   1.4    1.8  2  Ribosomal_L30    Ribosomal protein L30p/L7e


Domain annotation for each model (and alignments):
>> Ribosomal_L30_N  Ribosomal L30 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2  15.2   3.5e-29   3.1e-25       1      72 []      14      85 ..      14      85 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 3.5e-29
  Ribosomal_L30_N  1 vPEsllKKrkrneklkakrakkaaakkkankkkrklifkRaekYvkEYrqkereeirlkReAkkaGnfyvpa 72
                     vPE+llKKrk++ek++a+r  +  ++k+ank+kr +if+RaekYvkEYr++ere++rl+R Ak + + y+pa
       CCE29736.1 14 VPETLLKKRKSQEKARAERTDAITKRKAANKEKRTVIFQRAEKYVKEYRDAEREKVRLHRLAKENDSAYIPA 85
                     8**********************************************************************8 PP

>> Ribosomal_L30  Ribosomal protein L30p/L7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   1.4   6.8e-24   6.1e-20       1      51 []      90     140 ..      90     140 .. 0.98
   2 ?   -2.2   0.1      0.46   4.1e+03      44      51 .]     147     154 ..     146     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 6.8e-24
                    EEEEE-S-STTS-HHHHHHHHHTT-SSTT.EEEE--SSHHHHHHHHHCCCGE CS
  Ribosomal_L30   1 lfVtrirsiigvppkvrktLqlLgLrkin.gtvvklntpsirGmLkkVkhlV 51 
                    +fV+ri++i+++ppk rktLqlL+L +in g+++k +++++  mLk+V++++
     CCE29736.1  90 IFVVRIKGINKMPPKPRKTLQLLRLLQINnGVFIKATKATTE-MLKIVEPWI 140
                    6*****************************************.*******97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.46
                    HHHCCCGE CS
  Ribosomal_L30  44 LkkVkhlV 51 
                    Lk Vk+lV
     CCE29736.1 147 LKTVKELV 154
                    899**998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1362  (0.0759663); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 1913.34
//
Query:       CCE29737.1  [L=150]
Description: probable 40S ribosomal protein S14 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-46  156.7   1.6    2.8e-46  156.5   1.6    1.1  1  Ribosomal_S11  Ribosomal protein S11
  ------ inclusion threshold ------
      0.075   12.8   0.1      0.093   12.4   0.1    1.2  1  Pilus_CpaD     Pilus biogenesis CpaD protein (pilus_cpaD)
      0.077   13.3   0.0       0.15   12.4   0.0    1.4  1  CBM_25         Carbohydrate binding domain (family 25)


Domain annotation for each model (and alignments):
>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   1.6   4.6e-50   2.8e-46       1     110 []      28     146 ..      28     146 .. 0.99

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 4.6e-50
  Ribosomal_S11   1 GvahiqasfnntiititdlkGaevlvksaGglgvkasr.kssPyaaqlaaekaaekvldkGikavevkvkg........pGpGreaalralaraGl 87 
                    Gva+i+asfn+t++++tdl+G+e++++ +Gg++vka+r +ssPyaa+laa+++a ++++ Gi+a+++k+++        pGpG+++alralaraG+
     CCE29737.1  28 GVARIFASFNDTFVHVTDLSGRETITRVTGGMKVKADRdESSPYAAMLAAQDVAARCKELGINALHIKIRAtggngtktPGPGAQSALRALARAGM 123
                    89********************************************************************************************** PP

  Ribosomal_S11  88 kigriedvtPiPhdgirrpkkrr 110
                    kigriedvtP+P d++rr+++rr
     CCE29737.1 124 KIGRIEDVTPTPSDSTRRKGGRR 146
                    ********************998 PP

>> Pilus_CpaD  Pilus biogenesis CpaD protein (pilus_cpaD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.6e-05     0.093      71     126 ..      54     109 ..      46     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.6e-05
  Pilus_CpaD  71 egagaivisvpsgssneaaaaaaaaeiravlaaaGvpaseisvrayqaaapedaap 126
                 + +g + +++ +++s++ aa+ aa++++a  ++ G++a +i++ra+ ++ +++ +p
  CCE29737.1  54 RVTGGMKVKADRDESSPYAAMLAAQDVAARCKELGINALHIKIRATGGNGTKTPGP 109
                 567889999999*********************************99998866655 PP

>> CBM_25  Carbohydrate binding domain (family 25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.4e-05      0.15      12      59 ..      84     131 ..      77     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
      CBM_25  12 trkkGftsayihyrpaGGswtavpGvkmrdaeaGyakkdvdlGaassl 59 
                 ++++G ++ +i+ r +GG  t +pG + ++a    a+  + +G   ++
  CCE29737.1  84 CKELGINALHIKIRATGGNGTKTPGPGAQSALRALARAGMKIGRIEDV 131
                 5789****************************9999999999976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1155.85
//
Query:       CCE29738.1  [L=1165]
Description: related to DNA repair helicase ERCC6 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-66  224.5   0.0    3.4e-66  223.3   0.0    1.6  1  SNF2_N      SNF2 family N-terminal domain
    1.3e-14   54.4   0.0    3.4e-14   53.1   0.0    1.8  1  Helicase_C  Helicase conserved C-terminal domain
    3.4e-08   33.7   0.0    1.1e-07   32.1   0.0    1.9  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.3   0.0   5.7e-70   3.4e-66      49     349 ..     411     713 ..     401     714 .. 0.92

  Alignments for each domain:
  == domain 1  score: 223.3 bits;  conditional E-value: 5.7e-70
                 HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............. RF
      SNF2_N  49 aeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkk............. 134
                 ae+++++ GGi  DemGLGKTvq++a+i+   a +++++        + p++iv+Pa+ll+qW++e++r++++ ++ +l+ +g+ +             
  CCE29738.1 411 AELYKQSVGGIVGDEMGLGKTVQLIAFIA---ALHHSNRL-------RRPVIIVAPATLLRQWVSEFHRWWPPLRVSILHSSGSGMmnprleddydldh 499
                 7899*************************...66666665.......59**********************************999************* PP

                 .......-----------------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHH CS
                 .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 135 .......mkkkntkvapklladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygL 226
                        +    +k+ + ++++ +v++ttY  l++ a      ++l  vew++ vlDEgh+++n +++++  +++L+t nr+il+GTP+qn+l++l++L
  CCE29738.1 500 yqpvaskSLGAARKIVAGVVKNGHVLVTTYTGLQTYA------DELLHVEWDYAVLDEGHKIRNPNAEITVSCKELNTPNRVILSGTPVQNNLTELWSL 592
                 ****998777788999******************999......9******************************************************* PP

                 HHHH-TTTT--HHHHHHHTHHHHH............HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH............ CS
                 xxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 227 lkfLreepfgekqtfdkllqrpie............aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkala 313
                 ++f+ +  +g+   f+ +++ pi+             +aek+++ L + +++++l r k dv ++lP+kte+++f+kl++++rk+Y+            
  CCE29738.1 593 FDFIYPMRLGTLVNFRAQFEIPIRqggyanasnlqvMTAEKCAEALKETISEYLLQRLKVDVAADLPEKTEQVLFCKLTEGQRKAYE------------ 679
                 ************************9999999999999999999999999999***********************************............ PP

                 ........HHHHHH-HHH-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 314 kllkrseaalkssskskekilelllelrqacnhpql 349
                 ++l ++e +   ++  + + l+ +  lr++cnhp+l
  CCE29738.1 680 TFLGSDECSAILNK--RRQSLYGIDILRKICNHPDL 713
                 44444444443333..345799************98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   5.6e-18   3.4e-14      12     111 .]     746     847 ..     733     847 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 5.6e-18
                 HTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSS CS
  Helicase_C  12 leeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtg 108
                 +  +g+k+l+f++ + +l+ v+   +  +i++++++ge+p + r+ ++++fn + +++ +L++t+ ++ G ++++++ +i+fd+++n+++  q++ R++
  CCE29738.1 746 MIPNGHKTLLFSQGKLMLNIVEKCMRDCNITYVRMDGETPVDRRQPMIDSFNtDPSIHvFLMTTRTGGLGTNLTGADRIIIFDPDWNPSTDLQARERAW 844
                 45689*************77555544449***********************7677888**************************************** PP

                 STT CS
  Helicase_C 109 Rag 111
                 R g
  CCE29738.1 845 RLG 847
                 *86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.8e-11   1.1e-07       6     169 ..     401     581 ..     396     583 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.8e-11
                 HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHG.........................GGGTG CS
      ResIII   6 eyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleef.........................kkfls 79 
                  yQ++ ++ l+e +  k+   g++  + G GKT+ ++++i++l+++++ ++ +++v   +ll q+ +ef                          ++  
  CCE29738.1 401 GYQKTGVQWLAELY--KQSVGGIVGDEMGLGKTVQLIAFIAALHHSNRLRRPVIIVAPATLLRQWVSEFhrwwpplrvsilhssgsgmmnprleDDYD- 496
                 57777777666555..588899999999**********************99999999***********77777777777777776666433332222. PP

                 G..........GEEEESSS-B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T..TTHHH.HHT---SEEEEEESS- CS
      ResIII  80 eayke......igkkvsgdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk..swrei.lekfkeavllglTATp 169
                            ++k++   +k+  ++  +n ++lvtt+  l+          +ell+ + d+ + DE H+++  +      +  + ++   ++ l++Tp
  CCE29738.1 497 ----LdhyqpvASKSLGAARKIV-AGVVKNGHVLVTTYTGLQTYA-------DELLHVEWDYAVLDEGHKIRNPNaeIT--VsCKELNTPNRVILSGTP 581
                 ....1444455555555555555.99999************9999.......99*****************99642122..233444556667778888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1234  (0.068827); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.48
# Mc/sec: 7306.14
//
Query:       CCE29739.1  [L=1033]
Description: related to histone transcription regulator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-82  276.6   1.5    3.5e-82  275.4   0.1    2.3  3  Hira         TUP1-like enhancer of split
    1.8e-32  110.8  21.7      5e-05   24.0   0.1    8.9  8  WD40         WD domain, G-beta repeat
      1e-15   57.8   0.0      0.036   14.4   0.1    6.6  7  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.7e-10   40.5   0.5    4.9e-10   39.0   0.5    1.9  1  HIRA_B       HIRA B motif
    5.6e-06   26.2   2.8         15    5.7   0.0    5.6  5  PD40         WD40-like Beta Propeller Repeat
      0.002   17.2   0.8       0.27   10.2   0.0    3.6  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
  ------ inclusion threshold ------
      0.063   11.7   0.0        3.5    5.9   0.0    2.2  2  Rav1p_C      RAVE protein 1 C terminal
       0.15   11.9   0.1          1    9.2   0.0    2.3  2  PUA_3        PUA-like domain
       0.16   11.3   0.0        5.2    6.3   0.0    2.6  3  WD40_like    WD40-like domain


Domain annotation for each model (and alignments):
>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.5     5e+03      31      89 ..     320     373 ..     308     374 .. 0.58
   2 ?   -1.8   0.0         1   2.1e+03      12      36 ..     689     713 ..     686     714 .. 0.83
   3 !  275.4   0.1   1.7e-85   3.5e-82       1     222 []     717     957 ..     717     957 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.5
        Hira  31 gllyvWnvkkkkvllppvslapllssssrssekeltrapavtsasltsnGvpivtlsng 89 
                  +l++Wn+++ + ++    + + ls +s s+ + + +++++  as  + G+++v + +g
  CCE29739.1 320 KTLSIWNTDTSRPVV----ILQDLSGKSISDLSWTPDGQTIFAAS-LDGGIVVVKFDEG 373
                 468899997776655....44444444444433344444444444.4668888877766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1
        Hira  12 spasfLessgsyLlavtsvgllyvW 36 
                  ++ ++ +++++ +a  ++g+++vW
  CCE29739.1 689 RAVILVTANKNFWAAACEDGSIHVW 713
                 5566777889*************** PP

  == domain 3  score: 275.4 bits;  conditional E-value: 1.7e-85
        Hira   1 GrrllPplvlespasfLessgsyLlavtsvgllyvWnvkkkkvllppvslapllssssrsseke.ltrapavtsasltsnGvpivtlsngdgylydksl 98 
                 Grrll+p++les++++Le+++++Ll++t++g+ +vW +k++++++ppvsl p+l+ + +s ++  +t++  vtsa+l+++G++ivtlsngdg+ y +++
  CCE29739.1 717 GRRLLNPIILESQPVILECRDQWLLCITAIGMAHVWGLKSQSSPHPPVSLGPILDIAVTSLNQHsATSGLGVTSAHLNTTGHIIVTLSNGDGFYYARDM 815
                 9********************************************************999877779********************************* PP

        Hira  99 ktWlrvsdswwalgsqywdsrdsstsssassas..................gilsalerktneevlrkgrakllqrlaktllekegfenleesvtlahl 179
                  tW+r+s++wwa+gsqyw+s+dss s+ +s+a                   gi+++ler+t++e+l kgra+ lqr+ kt++++++ e+le+sv++ahl
  CCE29739.1 816 FTWQRLSEAWWAVGSQYWNSNDSSISALQSTAVgpsstentdetsnvtvssGIIPFLERHTTNEFLLKGRAYALQRIIKTVIQRKEAEDLESSVSIAHL 914
                 *****************************9999****************************************************************** PP

        Hira 180 EnrlaaallLgsadEfkkwllaYakrLaeeglesrlrelckeL 222
                 Enr+a al+L++++Ef+ +l++YakrL++eg + +++el+++L
  CCE29739.1 915 ENRIAGALQLEAKEEFRLYLFMYAKRLGAEGTRPKVEELLNSL 957
                 ****************************************997 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.3   5.8e-08   0.00012      10      38 .]      14      45 ..       5      45 .. 0.78
   2 !   24.0   0.1   2.5e-08     5e-05       4      37 ..      63      97 ..      60      98 .. 0.88
   3 !   23.8   1.0   2.8e-08   5.6e-05       5      38 .]     123     157 ..     119     157 .. 0.88
   4 !   23.6   0.0   3.3e-08   6.6e-05       2      37 ..     162     198 ..     161     199 .. 0.92
   5 ?    2.8   0.0      0.12   2.5e+02      15      28 ..     237     250 ..     226     255 .. 0.85
   6 !    7.1   0.0    0.0053        10      15      38 .]     311     326 ..     272     326 .. 0.81
   7 !    8.8   0.1    0.0015       3.1       7      34 ..     339     365 ..     334     368 .. 0.83
   8 ?    5.1   0.1     0.024        47      24      37 ..     701     713 ..     692     714 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.8e-08
                S.SS..EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40 10 H.ss..vtslafspdgawlasGsdDgtvriWd 38
                  ++  v+s+ +spdg+ la+++ Dg+vr+W+
  CCE29739.1 14 EqKDfeVYSCHVSPDGKRLATAGGDGHVRVWS 45
                233377*************97655*******5 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 2.5e-08
                EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37
                l + + H + ++s++fsp+g++lasG dD+ + ++
  CCE29739.1 63 LCHMSHHlGTIHSVRFSPNGRYLASGADDKLICVY 97
                5677788888*****************9**99987 PP

  == domain 3  score: 23.8 bits;  conditional E-value: 2.8e-08
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + l GH ++v +la+spd+++l+s + D +v +W+
  CCE29739.1 123 KRLIGHdNDVQDLAWSPDSSLLVSVGLDSKVVVWS 157
                 5578**999**************9899*******5 PP

  == domain 4  score: 23.6 bits;  conditional E-value: 3.3e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 ++l+++ +H s+v ++ f+p ++++a++sdD+t++i+
  CCE29739.1 162 EKLKSIPAHqSHVKGITFDPANKFFATASDDRTIKIF 198
                 5789999**999***********************97 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.12
                 EEEEETTSSEEEEE CS
        WD40  15 slafspdgawlasG 28 
                  +++spdg+ +a++
  CCE29739.1 237 RCSWSPDGNHIAAA 250
                 688*******9875 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0053
                 EEEEETTSSEEEEEETTSEEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriWd 38 
                  +        +as++ D+t+ iW+
  CCE29739.1 311 TV--------IASAGQDKTLSIWN 326
                 33........78999********8 PP

  == domain 7  score: 8.8 bits;  conditional E-value: 0.0015
                 EESSSSEEEEEEETTSSEEEEEETTSEE CS
        WD40   7 ltGHssvtslafspdgawlasGsdDgtv 34 
                 l+G  s+++l++ pdg+ ++++s Dg +
  CCE29739.1 339 LSGK-SISDLSWTPDGQTIFAASLDGGI 365
                 5565.8*************999999976 PP

  == domain 8  score: 5.1 bits;  conditional E-value: 0.024
                 EEEEEETTSEEEEE CS
        WD40  24 wlasGsdDgtvriW 37 
                 w a++++Dg++++W
  CCE29739.1 701 W-AAACEDGSIHVW 713
                 5.55677******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00021      0.41      34      78 ..      13      57 ..       6      70 .. 0.80
   2 !    6.7   0.0    0.0044       8.8      39      71 ..      71     103 ..      62     115 .. 0.84
   3 !   14.4   0.1   1.8e-05     0.036      36      88 ..     127     178 ..     116     180 .. 0.88
   4 ?    5.5   0.0     0.011        22      35      66 ..     168     199 ..     162     210 .. 0.91
   5 ?   -0.1   0.0      0.58   1.2e+03      43      58 ..     237     252 ..     226     265 .. 0.81
   6 !   14.0   0.0   2.4e-05     0.048      10      75 ..     313     378 ..     310     389 .. 0.78
   7 ?   -2.2   0.0       2.6   5.2e+03      49      65 ..     697     713 ..     695     733 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
  ANAPC4_WD40 34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78
                  +++d ev s + +pdgk La a  dg+vr+ + e     +  s+
   CCE29739.1 13 GEQKDFEVYSCHVSPDGKRLATAGGDGHVRVWSTEAIYHAKDASY 57
                 5788999************************99887655555555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0044
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  ++++s++++p+g+ La + +d  + +++  +  
   CCE29739.1  71 GTIHSVRFSPNGRYLASGADDKLICVYHLDKNA 103
                  6899*****************999999987765 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.8e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  ++d+ v++LaW+pd +lL+ +  d++v + + ++ + ++s+++++++ v+ ++
   CCE29739.1 127 GHDNDVQDLAWSPDSSLLVSVGLDSKVVVWSGHTFEKLKSIPAHQSH-VKGIT 178
                  67999**************************************9984.77665 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.011
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  ++++s+v+++ + p +k++a a +d +++++ 
   CCE29739.1 168 PAHQSHVKGITFDPANKFFATASDDRTIKIFR 199
                  57899************************985 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.58
  ANAPC4_WD40  43 sLaWkpdgklLavays 58 
                    +W+pdg+ +a a +
   CCE29739.1 237 RCSWSPDGNHIAAANA 252
                  678*******999865 PP

  == domain 6  score: 14.0 bits;  conditional E-value: 2.4e-05
  ANAPC4_WD40  10 iAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  iA a +d+ l +  ++  r + + +d +++++++L+W pdg+ +  a  dg + +++  +g++   
   CCE29739.1 313 IASAGQDKTLSIWNTDTSRPVVILQDLSGKSISDLSWTPDGQTIFAASLDGGIVVVKFDEGELGWV 378
                  5666666666666666666555678999****************************9999987555 PP

  == domain 7  score: -2.2 bits;  conditional E-value: 2.6
  ANAPC4_WD40  49 dgklLavaysdgevrll 65 
                  + ++ a a++dg++++ 
   CCE29739.1 697 NKNFWAAACEDGSIHVW 713
                  56778999999999876 PP

>> HIRA_B  HIRA B motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.5   2.4e-13   4.9e-10       1      22 [.     481     502 ..     481     503 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 2.4e-13
      HIRA_B   1 KQkvTitKdGKKRVaPtLiSss 22 
                 K++vTi KdGKKRVaP+L+Sss
  CCE29739.1 481 KSRVTIGKDGKKRVAPLLVSSS 502
                 89*******************9 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.031        61      16      24 ..      25      33 ..      25      33 .. 0.90
   2 !    5.7   0.0    0.0074        15       6      24 ..      68      86 ..      65      86 .. 0.84
   3 ?    0.3   0.1      0.35   7.1e+02      15      23 ..     136     144 ..     134     145 .. 0.83
   4 ?    5.2   0.0     0.011        22      15      24 ..     239     248 ..     238     248 .. 0.90
   5 ?    5.3   0.2      0.01        20      15      23 ..     348     356 ..     340     357 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.031
                E-TTSSEEE CS
        PD40 16 fSPDGkrla 24
                +SPDGkrla
  CCE29739.1 25 VSPDGKRLA 33
                5******97 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0074
                SSSS.EEEEEE-TTSSEEE CS
        PD40  6 ntpgnegaPsfSPDGkrla 24
                ++ g +++ +fSP+G++la
  CCE29739.1 68 HHLGTIHSVRFSPNGRYLA 86
                566788999********97 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.35
                 EE-TTSSEE CS
        PD40  15 sfSPDGkrl 23 
                 ++SPD + l
  CCE29739.1 136 AWSPDSSLL 144
                 8****9877 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.011
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 s+SPDG+ +a
  CCE29739.1 239 SWSPDGNHIA 248
                 8*****9886 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.01
                 EE-TTSSEE CS
        PD40  15 sfSPDGkrl 23 
                 s++PDG+++
  CCE29739.1 348 SWTPDGQTI 356
                 9*******9 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00013      0.27     189     233 ..      19      69 ..      10      81 .. 0.72
   2 ?   -0.5   0.0      0.23   4.6e+02     181     215 ..      63      98 ..      49     105 .. 0.80
   3 ?   -1.6   0.0      0.53     1e+03     186     214 ..     170     198 ..     125     201 .. 0.79
   4 ?    2.6   0.1     0.027        54     176     211 ..     328     365 ..     301     372 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00013
    Ge1_WD40 189 liveaafspdGtalatasedGevkffq...vylede...eeprCLheWkPh 233
                 ++ +  +spdG  lata  dG v+ +    +y  ++   ++pr L +   h
  CCE29739.1  19 EVYSCHVSPDGKRLATAGGDGHVRVWSteaIYHAKDasyTKPRQLCHMSHH 69 
                 6788899******************96333565544455666666555555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.23
    Ge1_WD40 181 llkieehs.liveaafspdGtalatasedGevkffq 215
                 l ++++h  +i +  fsp+G  la  + d ++  + 
  CCE29739.1  63 LCHMSHHLgTIHSVRFSPNGRYLASGADDKLICVYH 98 
                 4567777559999**************998887765 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.53
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkff 214
                 ++s++   +f p     atas d ++k f
  CCE29739.1 170 HQSHVKGITFDPANKFFATASDDRTIKIF 198
                 34577778888888888999999888887 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.027
    Ge1_WD40 176 eieegllkieehs..liveaafspdGtalatasedGev 211
                 ++++ ++ +++ s   i++ +++pdG ++ +as dG +
  CCE29739.1 328 DTSRPVVILQDLSgkSISDLSWTPDGQTIFAASLDGGI 365
                 44444444554444479999***************964 PP

>> Rav1p_C  RAVE protein 1 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0017       3.5      70     117 ..     127     172 ..      73     180 .. 0.87
   2 ?    3.3   0.0     0.011        22      35      99 ..     302     366 ..     288     370 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0017
     Rav1p_C  70 eeedsikdldwtstpdsqsilavgFekkvllltqlRydylnkgpswaa 117
                  ++++++dl w+  pds+ +++vg ++kv++++   +++l+++p++++
  CCE29739.1 127 GHDNDVQDLAWS--PDSSLLVSVGLDSKVVVWSGHTFEKLKSIPAHQS 172
                 67899******7..7999**********************99998875 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.011
     Rav1p_C  35 isgsslkkvavv..desrseLsiwdlksgvl.eyeeefeeedsikdldwtstpdsqsilavgFekkvl 99 
                  sg + + v v+    + ++Lsiw++ +++     ++  + +si dl wt  pd+q i+a + +  ++
  CCE29739.1 302 TSGDAGQLVTVIasAGQDKTLSIWNTDTSRPvVILQDL-SGKSISDLSWT--PDGQTIFAASLDGGIV 366
                 55666677778844446789******999863666777.899*******7..7888888877766655 PP

>> PUA_3  PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.4   2.8e+03      30      44 ..     304     318 ..     294     327 .. 0.82
   2 ?    9.2   0.0    0.0005         1      41      60 ..     966     985 ..     962     986 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.4
       PUA_3  30 ledGdvVdvfsekgk 44 
                   +G++V v +++g+
  CCE29739.1 304 GDAGQLVTVIASAGQ 318
                 469*******99986 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0005
       PUA_3  41 ekgkflGtGyynpqskiavR 60 
                 ++ +++G+G+y+ + ki+++
  CCE29739.1 966 QSSNYIGRGWYSTHDKICGW 985
                 4689***************9 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.64   1.3e+03       2      30 ..      19      47 ..      18      51 .. 0.92
   2 ?    1.4   0.0     0.082   1.6e+02       3      33 ..      73     103 ..      71     109 .. 0.90
   3 ?    6.3   0.0    0.0026       5.2      13      86 ..     311     386 ..     305     393 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.64
   WD40_like  2 eiYsidiskkgslilyGgkddkctvlkle 30
                e+Ys  +s++g+ ++  g d +++v ++e
  CCE29739.1 19 EVYSCHVSPDGKRLATAGGDGHVRVWSTE 47
                8*******************999999887 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.082
   WD40_like   3 iYsidiskkgslilyGgkddkctvlklesle 33 
                 i s+ +s++g +++ G++d+ + v++l+ + 
  CCE29739.1  73 IHSVRFSPNGRYLASGADDKLICVYHLDKNA 103
                 889**********************999876 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0026
   WD40_like  13 slilyGgkddkctvlkleslesvsivesfe.dSvifvkll.dddlilvvtlDGtillslleneeevenekieedis 86 
                 ++i+  g+d+++ + ++++   v i+++++  S+       d++ i  ++lDG i+  ++ ++e     + ee+i 
  CCE29739.1 311 TVIASAGQDKTLSIWNTDTSRPVVILQDLSgKSISDLSWTpDGQTIFAASLDGGIVVVKFDEGELGWVAQTEENIK 386
                 578899**********************98468876665526679**********888888888555566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1033 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.83u 0.26s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 6540.41
//
Query:       CCE29740.1  [L=155]
Description: uncharacterized protein CPUR_03587 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-06   26.3   0.0    5.4e-06   25.9   0.0    1.1  1  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0     3e-10   5.4e-06     262     317 ..       3      58 ..       1      61 [. 0.95

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3e-10
  Glyco_transf_15 262 nfeigdldffrseayekfFeylDskGgffYerWgdapvhsiavslllpkdkihffe 317
                      +feig+l ffrs  ++ + e++D++G  + e  +d  v si++s++lp++++  f+
       CCE29740.1   3 KFEIGSLGFFRSYSHQVLLEHFDESGSQHDEGLSDILVPSISASIFLPQKSVWNFR 58 
                      7************************************************9997776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1199.40
//
Query:       CCE29741.1  [L=124]
Description: uncharacterized protein CPUR_03588 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 972.97
//
Query:       CCE29742.1  [L=466]
Description: probable UDP-galactose transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-92  309.4  13.7    5.2e-92  308.4  13.7    1.4  1  Nuc_sug_transp  Nucleotide-sugar transporter
    1.1e-05   25.6  28.6    0.00024   21.3   7.2    2.5  2  EamA            EamA-like transporter family
    0.00029   20.2  12.8     0.0027   17.0  12.8    2.4  1  UAA             UAA transporter family
  ------ inclusion threshold ------
      0.016   14.8   0.1      0.016   14.8   0.1    2.4  3  EmrE            Putative multidrug resistance efflux transpor
        0.2   11.7   1.0        1.3    9.0   0.4    2.4  2  Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis 
       0.25   11.1   0.1       0.61    9.8   0.0    1.6  2  DUF3328         Domain of unknown function (DUF3328)
        1.5    8.1  15.7       0.19   11.0   1.5    2.4  2  TPT             Triose-phosphate Transporter family
        1.8    8.8   9.1        6.9    6.9   1.4    2.9  3  DMT_6           Putative member of DMT superfamily (DUF486)


Domain annotation for each model (and alignments):
>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.4  13.7   2.3e-95   5.2e-92       6     315 .]      27     391 ..      23     391 .. 0.92

  Alignments for each domain:
  == domain 1  score: 308.4 bits;  conditional E-value: 2.3e-95
  Nuc_sug_transp   6 kyislvvlvvqnaslvltlrYartk..edkerylsttavllaeilklvvclllllkeekskv..kkllrelkkeilakp..kdtlklavPsliYt 94 
                     k +slv l++qn++l+l+++Y+r +  + ++ry+++tav+l+e++kl v+l+++++e+ +++  +   + l ++i +    +d + la P+++Yt
      CCE29742.1  27 KNLSLVFLTFQNSALILVMHYSRVMppDGDHRYFTSTAVFLNEVIKLAVSLTVAMYETSTTLapSTPATVLFEQIYNGIfsSDGWYLAGPAVLYT 121
                     889**********************877789***********************9999988744444556666666654449************* PP

  Nuc_sug_transp  95 vqnnllyvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseesekaaaaa................... 170
                     +qn l+y a+ nLd   +qv yq+kil+ta+fsvllL+r+l  k W+sl++L++Gv +v l ++++  +      +                   
      CCE29742.1 122 LQNLLQYAAVGNLDPVHFQVLYQVKILATAVFSVLLLRRQLGLKGWMSLVILTLGVCIVSLPSSDKAPDAIIL--Hgvpdhffprskhelgqtva 214
                     *************************************************************988775444433..346899************** PP

  Nuc_sug_transp 171 .............................keensvlGliavlaacllsgfaGvYfekiLkdsnv..slWirniqlallsiilallt.vllkdgsk 233
                                                      + +G++avl++ ++sg+aGvYfek+Lk+s +  s+W+rn+ql+++s+i a+l+ ++++dg+ 
      CCE29742.1 215 gaaipepalhlskrsatyegiandmppadPLMVYSAGVSAVLISAIVSGLAGVYFEKMLKESATnaSVWMRNVQLSFYSLIAAFLGgCVYQDGAG 309
                     *************************98665566778************************975444******************9637889**** PP

  Nuc_sug_transp 234 isekGffkGydlvvwvvvllqavGGlvvavvvkyaDnilkgfatslaiilstvasvllldlkitllFllGallviaavflYs 315
                     i e+Gff+Gy+ vvw+++llqa GG++ ++v++ aDni+k+fa s++i++s + s+ ++d++++++FllG+llv++a+++Ys
      CCE29742.1 310 IREHGFFEGYNAVVWAAILLQAAGGMLASLVIRDADNIVKNFAMSISIVISFLFSMWIFDFTVNITFLLGTLLVLLATYIYS 391
                     *********************************************************************************6 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   7.2   1.1e-07   0.00024      31     136 ..      77     181 ..      60     182 .. 0.73
   2 !   10.0  13.5   0.00034      0.76       3     135 ..     251     390 ..     249     392 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.1e-07
        EamA  31 ltltfvrfliagillliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivli 128
                 lt++++ +    +   + ++l+e+     +s  +  ++l   ++  +l +ll++ a+ ++++    ++  +  + t+++svlll+ +l+lk ++++v+ 
  CCE29742.1  77 LTVAMYETSTTLAPSTPATVLFEQIYnGIFSSDG--WYLAGPAVLYTLQNLLQYAAVGNLDPVHFQVLYQVKILATAVFSVLLLRRQLGLKGWMSLVIL 173
                 5555555555555556665555555522222222..333333344566779************************************************ PP

        EamA 129 llGvllil 136
                  lGv++++
  CCE29742.1 174 TLGVCIVS 181
                 *****997 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00034
        EamA   3 gillallaalfwaiyfvlskillrkv...spltltfvrfliagilllii........allkegklaklslkdwllllllgllgtvlafllffyalkkts 90 
                 g+  +l++a+++++++v+  ++l++     ++++  v++ + +++  ++        a ++e+ +     +++ +++  ++l  +++ +l    +++ +
  CCE29742.1 251 GVSAVLISAIVSGLAGVYFEKMLKESatnASVWMRNVQLSFYSLIAAFLggcvyqdgAGIREHGF----FEGYNAVVWAAILLQAAGGMLASLVIRDAD 345
                 78899*****************9988555333444444444444444445544466666666666....5557788888888888888899999***** PP

        EamA  91 asnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                   +  +++s++ v++ ++s++++  +++++ llg++l+ll++++ 
  CCE29742.1 346 NIVKNFAMSISIVISFLFSMWIFDFTVNITFLLGTLLVLLATYIY 390
                 *****************************************9986 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0  12.8   1.2e-06    0.0027      70     300 ..     118     392 ..     111     394 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.2e-06
         UAA  70 alffitsvlnnealkydisvPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdk........................... 141
                 +l ++ + l++ a++   +v ++++ +  k++++ + ++l+l+++  l   +s+++ltlGv i++l  ++dk                           
  CCE29742.1 118 VLYTLQNLLQYAAVGNLDPVHFQVLYQ-VKILATAVFSVLLLRRQLGLKGWMSLVILTLGVCIVSL-PSSDKapdaiilhgvpdhffprskhelgqtva 214
                 556667777777777644666677665.799***********************************.5556669************************* PP

         UAA 142 .......................kedskeslnkfllGiallvlallldavlglvqeklykkygkhskealfyshllslplfl...llqgellsavkfls 214
                                        + +    l+  + G+  ++++ +++++ g++ ek+ k  ++ ++ ++++ ++    + l   +l g +++  + ++
  CCE29742.1 215 gaaipepalhlskrsatyegianDMPPADPLMVYSAGVSAVLISAIVSGLAGVYFEKMLK--ESATNASVWMRNVQLSFYSLiaaFLGGCVYQDGAGIR 311
                 ******************998764444445666889************************..4555566776666555555558899999999999999 PP

         UAA 215 esedvallslpsklfylllnvltqyvcikgVlilisefgaltvtlvltlRKfvslllSillFknpltlqhlvgtllVflglllysy 300
                 e+  ++         ++ +  l+q+++     + i+  +  +    +++  ++s l+S+++F+  + ++ l+gtllV+l++++ys 
  CCE29742.1 312 EHGFFE-----GYNAVVWAAILLQAAGGMLASLVIRDADNIVKNFAMSISIVISFLFSMWIFDFTVNITFLLGTLLVLLATYIYSV 392
                 999999.....355666677789999999999***************************************************986 PP

>> EmrE  Putative multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   7.2e-06     0.016      64     118 ..     142     196 ..     111     199 .. 0.91
   2 ?   -3.1   0.1         2   4.6e+03      17      34 ..     265     283 ..     249     302 .. 0.44
   3 ?    1.9   0.5     0.063   1.4e+02      86     136 ..     348     397 ..     319     413 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.2e-06
        EmrE  64 twqitivagllllplfkrkkiplkalllsllillGvvlvqleeakelslkelllg 118
                  +q+ i+a+++ ++l+ r+++ lk+++  +++ lGv++v l + ++++ + +l g
  CCE29742.1 142 LYQVKILATAVFSVLLLRRQLGLKGWMSLVILTLGVCIVSLPSSDKAPDAIILHG 196
                 69***************************************99998877666665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2
        EmrE  17 kg.elkellkelkkkplfw 34 
                  g  ++++lke +++  +w
  CCE29742.1 265 AGvYFEKMLKESATNASVW 283
                 2223333333333333333 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.063
        EmrE  86 lkalllsllillGvvlvqleeakelslkelllgvlpvlvaafaYPlGnrkv 136
                 +k++++s+ i++  ++  +   + +   ++llg+l vl+a+ +Y +  rk 
  CCE29742.1 348 VKNFAMSISIVISFLF-SMWIFDFTVNITFLLGTLLVLLATYIYSVPERKF 397
                 5666666666665433.3333333334456888888999998888888776 PP

>> Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.3   6.8e+02       9      47 ..     149     187 ..     143     212 .. 0.80
   2 ?    9.0   0.4   0.00058       1.3       5      52 ..     351     398 ..     347     422 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.3
  Halogen_Hydrol   9 liavivalvsffllgfsfflalliailggilvyvasrkn 47 
                     ++av+ +l++   lg + +++l+i+ lg  +v ++s+++
      CCE29742.1 149 ATAVFSVLLLRRQLGLKGWMSLVILTLGVCIVSLPSSDK 187
                     456777777777889999999999999999998888744 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00058
  Halogen_Hydrol   5 llsiliavivalvsffllgfsfflallia.ilggilvyvasrknkkkkh 52 
                     + +++++vi +l+s+ +++f++ +++l++ +l ++++y+ s   ++k h
      CCE29742.1 351 FAMSISIVISFLFSMWIFDFTVNITFLLGtLLVLLATYIYSV-PERKFH 398
                     6788999999***************88887777777666554.445555 PP

>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.6   8.1e+03      19      42 ..     167     190 ..     158     212 .. 0.62
   2 ?    9.8   0.0   0.00027      0.61       9      65 ..     365     421 ..     359     440 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.6
     DUF3328  19 llllllllllilssllsssekkaa 42 
                 ++ l++l l ++ + l+ss k ++
  CCE29742.1 167 WMSLVILTLGVCIVSLPSSDKAPD 190
                 455555555555555555555544 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00027
     DUF3328   9 awrrllllvlllllllllllilssllsssekkaakkkspsspspaldaieyelkqfk 65 
                  w+  + +++++ll +ll+l+++++ s +e+k ++++++ ++s +++aie +l++ +
  CCE29742.1 365 MWIFDFTVNITFLLGTLLVLLATYIYSVPERKFHRPPPVRIYSFEKPAIEQTLTPMQ 421
                 4555578999999999999999*************9**************9998876 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.5   8.6e-05      0.19     222     288 ..     113     179 ..      66     181 .. 0.72
   2 ?    1.6   6.8     0.063   1.4e+02     146     290 .]     251     391 ..     246     391 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.6e-05
         TPT 222 lllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvfl 288
                 l   +vl+ l+n + y+++ +  pv + v   vK     v+svl+++ ++ l   +  ++ ++Gv +
  CCE29742.1 113 LAGPAVLYTLQNLLQYAAVGNLDPVHFQVLYQVKILATAVFSVLLLRRQLGLKGWMSLVILTLGVCI 179
                 4455788888888888888888888888888888888888888888888888888888888888765 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.063
         TPT 146 gfisAlisnltfslrnifsKkllkklkdldalnlfaiitilslllllPvallvegvlktpsllkstkvslkevllllllsgvlf.hlynqvaymvLerv 243
                 g ++ lis +++ l +++  k+lk++   ++  ++     ls+  l+  a+l   v++  + ++++  ++ e +  ++++++l   +  ++a  v+   
  CCE29742.1 251 GVSAVLISAIVSGLAGVYFEKMLKES--ATNASVWMRNVQLSFYSLIA-AFLGGCVYQDGAGIREH--GFFEGYNAVVWAAILLqAAGGMLASLVIRDA 344
                 7788899999999**********993..44444444444444333332.22222244444555555..2333444444444444045678999999999 PP

         TPT 244 spvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflYs 290
                  ++    a ++  v++  +s+ +f   v++  ++Gt ++++ +++Ys
  CCE29742.1 345 DNIVKNFAMSISIVISFLFSMWIFDFTVNITFLLGTLLVLLATYIYS 391
                 99*99*****************************************8 PP

>> DMT_6  Putative member of DMT superfamily (DUF486)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.4   5.5e+03      65      80 ..      67      82 ..      56      95 .. 0.71
   2 ?    5.8   0.4    0.0072        16      63     104 ..     140     180 ..     122     181 .. 0.81
   3 ?    6.9   1.4    0.0031       6.9      63     103 ..     349     389 ..     343     391 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.4
       DMT_6 65 iqevitlvvfvlfsvl 80
                ++evi l+v  +++++
  CCE29742.1 67 LNEVIKLAVSLTVAMY 82
                5677777776666655 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0072
       DMT_6  63 kiiqevitlvvfvlfsvlllkeklklnhlvaflllvlavyfv 104
                 +++ +v  ++  ++fsvlll+++l l+  ++ ++l l+v++v
  CCE29742.1 140 QVLYQVK-ILATAVFSVLLLRRQLGLKGWMSLVILTLGVCIV 180
                 5555544.455689*************************987 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0031
       DMT_6  63 kiiqevitlvvfvlfsvlllkeklklnhlvaflllvlavyf 103
                 k +   i++v+  lfs+++++ ++++++l+++ll++la y+
  CCE29742.1 349 KNFAMSISIVISFLFSMWIFDFTVNITFLLGTLLVLLATYI 389
                 55667899******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3207.22
//
Query:       CCE29743.1  [L=373]
Description: uncharacterized protein CPUR_03590 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.02   14.9   0.0      0.042   13.8   0.0    1.5  1  F-box-like_2  F-box-like domain


Domain annotation for each model (and alignments):
>> F-box-like_2  F-box-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.3e-06     0.042      25      44 ..      78      97 ..      61     122 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-06
  F-box-like_2 25 lPdellelifkgCkdpayep 44
                   P e+ +lif++C+d+ ++ 
    CCE29743.1 78 FPTEIHRLIFEYCYDDDLKS 97
                  7***************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2863.31
//
Query:       CCE29744.1  [L=967]
Description: related to Mx protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-23   82.3   0.0    2.4e-22   79.8   0.0    2.3  1  Dynamin_N    Dynamin family
    5.9e-11   42.1   1.0     0.0001   21.6   0.0    2.3  2  Dynamin_M    Dynamin central region
    0.00048   20.2   1.9    0.00066   19.8   0.0    2.2  2  GED          Dynamin GTPase effector domain
     0.0028   17.7   0.0      0.061   13.4   0.0    2.7  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0076   16.0   0.0       0.74    9.5   0.0    2.9  2  AAA_15       AAA ATPase domain
  ------ inclusion threshold ------
      0.015   15.8   0.0      0.039   14.5   0.0    1.7  1  ABC_tran     ABC transporter
      0.072   12.8   0.0        0.2   11.4   0.0    1.7  1  Amidase02_C  N-acetylmuramoyl-l-alanine amidase
        0.1   12.5   0.0         16    5.3   0.0    2.6  3  RsgA_GTPase  RsgA GTPase
       0.56   10.2   2.1         21    5.1   0.4    3.5  3  DEK_C        DEK C terminal domain


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   1.2e-25   2.4e-22       1     168 []     150     384 ..     150     384 .. 0.76

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 1.2e-25
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---CCS...SSEEEE...............T-EB--CHHHHHHHHHHHHHHHTSSS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeaseravkeelkek...............ekkledfsevreeieketekiagank 84 
                 +++vG+qS+GKSS++  L   d lpr+++ +Tr+pl+++ +e+++ s r ++ +  +                e+ +  + + + + + e+++      
  CCE29744.1 150 LVLVGDQSAGKSSLMSGLANLD-LPRSEGTCTRCPLHIRVSENSDWSCRVSIRKEYSYqppldrsinetdvtdEDPFFPWRKREPTATHEFKTM----- 242
                 589*******************.*****************888886633333333333444444222122111222222222222222222222..... PP

                 S--SS.....................................................-EEEEEEETTS-SEEEEE---B-SSSGTTS.........HH CS
   Dynamin_N  85 giskk.....................................................villkilsllvkgltlvDlPGldsvnkrdq.........el 121
                     +                                                     +++l+i++++ ++l+++D+PG+ ++++ +          +l
  CCE29744.1 243 ----HdksqieevlrwaqiailnddkhhslfipgsgaiavntpvteaaetttakfspnIVSLEIKGPNLPDLSFYDMPGIFQNPADERddylvnvvrNL 337
                 ....033445556888888888888888888888899999999999999999999999************************99988899********* PP

                 HHHHH.STTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE-C CS
   Dynamin_N 122 vkeyi.kkadiilavtsanhdlsnsealflarevdpkgkrtivvltkl 168
                  + yi ++++ii++ +++n+d+ ns    l r ++  ++rti+vltk+
  CCE29744.1 338 SRAYIeHPSAIIICAMPMNSDAENSSTFGLTRRLRA-SSRTIGVLTKA 384
                 ***********************9999888888775.789******95 PP

>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.1e-08    0.0001      32     115 ..     421     511 ..     409     539 .. 0.78
   2 !   18.7   0.2     4e-07    0.0008     169     279 ..     659     773 ..     643     777 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 5.1e-08
   Dynamin_M  32 sieealkkEkaFFeshpa......yrkladkaGtpyLakkLnqiLvehIrkslPelkkkineklqklekeleelgeskpsde.ektklllq 115
                 +++e  + E++ Fe+h++      + +++d++G++ L+  L++ L e   k lPe+k+k+++   ++++ le+l e  ++ e e ++ l++
  CCE29744.1 421 DLDELKRWEEHIFEDHSIgswpttFYEFSDRCGIEKLKSFLSERLGEAFIKGLPEIKSKLKQHFDNVQSHLEALPELPENVElEIQTGLMR 511
                 55555666667777775333222267889*********************************************98666655655555555 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 4e-07
   Dynamin_M 169 eeirtairnsrGrelplfvpekaFealvkkqikkleepalkcvelVyeelekivek.lekelkrFpn..Lreeikevvedllreqeeptkemienliem 264
                 +++r+ i+  + + +p  +++++++ lv + ++ ++ep   +++ +   l + +e+ l+k+l++ ++  + +e+k+ ++++l+e++++ +  +  l e 
  CCE29744.1 659 RQVREEIQAKTTSGMPDRTSDEVYKDLVTESVRPWKEPMDVFITRAMRDLLQSLESaLNKSLENLKKrsIYKEAKKHLRSCLEEHKREIQRDLVLLYED 757
                 78999**************************************99999999999998889998888777999999999999999999999999999999 PP

   Dynamin_M 265 elayint.nhpdfiga 279
                 e++ + t n++ f++ 
  CCE29744.1 758 EMERLLTfNNDAFMQY 773
                 9999999899999875 PP

>> GED  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.5       2.4   4.8e+03      79      89 ..     726     736 ..     701     762 .. 0.56
   2 !   19.8   0.0   3.3e-07   0.00066      10      90 ..     837     922 ..     828     924 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.4
                 HHHHHHHCCCC CS
         GED  79 lealkkAreil 89 
                  +++k+A++ l
  CCE29744.1 726 RSIYKEAKKHL 736
                 22333333322 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 3.3e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCCCHHHCCTTSGGG.....HHHHT---SCHCCCCHHHHHHHHHHHHHCCCCC CS
         GED  10 rslvksYfnivrktiadqiPkaimhllvneakeslqkellakLykked.....ldeLLkEdeeiaekRkelkkrlealkkAreils 90 
                   +v  Y++ +  + ad++ + i++ ++ +++++l + + +kL  ++      + +L++Ed+ +a +R++lk   +  +kA   + 
  CCE29744.1 837 VAYVRGYYRLAALRFADTVSQRIICRMIPSIRRQLPSYMEEKLGIRRPdaanvYVRLMEEDDTTALMRETLKVEKDKFEKALASIG 922
                 456999*************************************988777888999*****************99999999998876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.1e-05     0.061       2      64 ..     150     326 ..     149     383 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-05
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE..................................................... CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke..................................................... 47 
                  ++vG   +GKS+L++ l +      ++  +Tr + ++rv+++ ++                                                     
  CCE29744.1 150 LVLVGDQSAGKSSLMSGLANL-DLPRSEGTCTRCPLHIRVSEN-SDwscrvsirkeysyqppldrsinetdvtdedpffpwrkreptathefktmhdks 246
                 689***************994.445667789999999999833.2356777777777788888888888888888899999999999999999999999 PP

                 ...............................................................EEEEECGGCSS...HHHHHH CS
    MMR_HSR1  48 ...............................................................ielvDtpGlie...gaseek 64 
                                                                                + ++D+pG+++   +   e+
  CCE29744.1 247 qieevlrwaqiailnddkhhslfipgsgaiavntpvteaaetttakfspnivsleikgpnlpdLSFYDMPGIFQnpaD---ER 326
                 999999999999999999999999999999999999999999999999999999999999999999999998753221...22 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00037      0.74      26     262 ..     150     486 ..     143     561 .. 0.68
   2 ?    1.6   0.3     0.089   1.8e+02     186     245 ..     708     765 ..     660     783 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00037
      AAA_15  26 tvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvef......................................... 83 
                  vl+G +++GKSs++  l    n + + ++ + +     ++++en + s ++ I++e+                                         
  CCE29744.1 150 LVLVGDQSAGKSSLMSGL---ANLDLPRSEGTCTRCPLHIRVSENSDWSCRVSIRKEYsyqppldrsinetdvtdedpffpwrkreptathefktmhdk 245
                 589************999...777767777778888888999999999999999999999999988888777777777777777777666666666677 PP

      AAA_15  84 .........................................aek..ekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisve 139
                                                          +     k   ++++l+ k+ + +d         l+ +    +++++++e +d  ++v 
  CCE29744.1 246 sqieevlrwaqiailnddkhhslfipgsgaiavntpvteaaE-TttAKFSPNIVSLEIKGPNLPD---------LSFYDMPGIFQNPADERDDYLVNVV 334
                 777777777777777777777777777666666666665431.1333333345555555555554.........6666666666666666666666666 PP

      AAA_15 140 kkkskkelpkekeeklekekeelkidkedlkklikkleeslkkee................................elknvlksaiiklllisakRnv 206
                  + s+ +++  +         + + ++++++ l ++l+ s    +                                 l+ ++ s  +  +l++ kR+ 
  CCE29744.1 335 RNLSRAYIEHPSAIIICAMPMNSDAENSSTFGLTRRLRAS----SrtigvltkadllpeggnhdqwlavmkqqthttGLGYFITSRPQGKDLDELKRWE 429
                 6666555555555555544445555555555555544433....1444477777788888889999999999999999999999999999999999999 PP

      AAA_15 207 sdedsekkssllgklkekileealqekl.eeelteklkeiqeklkeidkklaeelkk 262
                 ++ +++++  +  ++++++++ ++ ekl +  +++  + + + l ei++kl+++  +
  CCE29744.1 430 EHIFEDHSIGSWPTTFYEFSDRCGIEKLkSFLSERLGEAFIKGLPEIKSKLKQHFDN 486
                 999999999999999999999999999985555566666666666666666555552 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.089
      AAA_15 186 lknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekl.eeelteklkei 245
                 l ++l+sa+ k+l + +kR++ +e +++ +s l++ k++i ++ +   l  e+  e l  +
  CCE29744.1 708 LLQSLESALNKSLENLKKRSIYKEAKKHLRSCLEEHKREIQRDLV---LlYEDEMERLLTF 765
                 445667777777777777777777777777777777777777633...1344444444444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     2e-05     0.039      14     102 ..     150     265 ..     141     273 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2e-05
                 EEEEESTTSSHHHHHHHHTTSS--.SEEEE.....EET.TCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH....................HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkp.teGei.....lld.gkdlkeqeleslrkeigvlpqepqlfpeltvren....................esdeei 85 
                 +++vG+  aGKS+L++ la+l  p  eG+      +++ +++++   + s rke ++ p  ++  +e+ v ++                    +++++i
  CCE29744.1 150 LVLVGDQSAGKSSLMSGLANLDLPrSEGTCtrcplHIRvSENSDWSCRVSIRKEYSYQPPLDRSINETDVTDEdpffpwrkreptathefktmHDKSQI 248
                 689******************999778888777775553444444779999999999999999999999888889**999999999999999999999* PP

                 HHHHHHSTTGGTTCBGE CS
                 xxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvv 102
                 e++l++ ++  l+d++ 
  CCE29744.1 249 EEVLRWAQIAILNDDKH 265
                 ****9999988887765 PP

>> Amidase02_C  N-acetylmuramoyl-l-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0001       0.2      14      34 ..     408     428 ..     400     431 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
  Amidase02_C  14 GltYfiTeptsdteLdkitaw 34 
                  Gl+YfiT   ++ +Ld ++ w
   CCE29744.1 408 GLGYFITSRPQGKDLDELKRW 428
                  ********************9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.02        40      73     121 ..     120     169 ..     105     181 .. 0.71
   2 ?    5.3   0.0    0.0082        16      48      96 ..     376     428 ..     333     433 .. 0.77
   3 ?   -4.0   0.0       6.2   1.2e+04      33      56 ..     745     768 ..     742     781 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.02
                  HHTTSEEEE--TTTHT.THHHHHHHCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  73 ealgyevllvsaktke.gleelkellkdktsvlvGqSGvGKStLinallp 121
                  +++g +v +++ + +e ++  ++++++    vlvG   +GKS+L+  l++
   CCE29744.1 120 QDIGKRVKACNDTLGElQHLGVSHAVQLPELVLVGDQSAGKSSLMSGLAN 169
                  55666666665553321223345555556789************988865 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0082
                  EEEEEEE-GGG--HHH....HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHH CS
  RsgA_GTPase  48 epvivlnKiDlleeee....eleelkeelealgyevllvsaktkegleelkel 96 
                  + + vl+K+Dll e       l  +k++++++g+  +++s  ++++l+elk++
   CCE29744.1 376 RTIGVLTKADLLPEGGnhdqWLAVMKQQTHTTGLGYFITSRPQGKDLDELKRW 428
                  45669*******998755556667788888999999*************9986 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 6.2
                  HHHHHHHHHHHHTT-EEEEEEE-G CS
  RsgA_GTPase  33 nlldrfLvlaeekgiepvivlnKi 56 
                  + ++r Lvl+ e ++e ++ +n  
   CCE29744.1 745 REIQRDLVLLYEDEMERLLTFNND 768
                  679999999999999999999864 PP

>> DEK_C  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.23   4.5e+02      23      34 ..     657     668 ..     656     677 .. 0.89
   2 ?    5.1   0.4     0.011        21      19      46 ..     720     747 ..     707     750 .. 0.91
   3 ?   -0.0   0.0      0.43   8.6e+02      20      41 ..     939     961 ..     938     963 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.23
       DEK_C  23 TkkkvReqLeek 34 
                 T ++vRe++++k
  CCE29744.1 657 TLRQVREEIQAK 668
                 89*******998 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.011
       DEK_C  19 LdtvTkkkvReqLeeklgvdLsekKafI 46 
                 L+++ k+++ +++ ++l  +L e+K +I
  CCE29744.1 720 LENLKKRSIYKEAKKHLRSCLEEHKREI 747
                 88999************888*****998 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.43
       DEK_C  20 dtvTkkkvReqLeeklgvd.Lse 41 
                 +++T  ++R++++   g+d Ls+
  CCE29744.1 939 ESMTHMDIRQAAQPLVGGDgLSD 961
                 5789999************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (967 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 6736.54
//
Query:       CCE29745.1  [L=401]
Description: uncharacterized protein CPUR_03592 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3017.29
//
Query:       CCE29746.1  [L=168]
Description: uncharacterized protein CPUR_03593 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-05   24.7   0.2    6.2e-05   23.5   0.0    1.6  2  LAMTOR    Late endosomal/lysosomal adaptor and MAPK and MTOR 


Domain annotation for each model (and alignments):
>> LAMTOR  Late endosomal/lysosomal adaptor and MAPK and MTOR activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   3.5e-09   6.2e-05       2      57 ..      20      71 ..      19      77 .. 0.86
   2 ?   -2.2   0.1      0.37   6.7e+03       9      31 ..     132     153 ..     131     156 .. 0.56

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3.5e-09
      LAMTOR  2 ErtrLLadpqnnsgnysrgydnslqqqeqespekltdeqeaLnkIvqetsdnlIDI 57
                ++trLL+d+ ++ + y++ +d   q+    +  + ++e eaL++++++ts  ++D+
  CCE29746.1 20 DETRLLYDDGQGMQ-YGS-FD--DQNLRGDETVEAQHEHEALQEVIAKTSIRMVDV 71
                689******99999.555.55..4777777778888*******************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.37
      LAMTOR   9 dpqnnsgnysrgydnslqqqeqe 31 
                 d+++ns+  +++++ s+ ++e +
  CCE29746.1 132 DHVSNSP-RGSPASASAPDDETS 153
                 6677777.555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1263.23
//
Query:       CCE29747.1  [L=332]
Description: uncharacterized protein CPUR_03594 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-07   30.4   5.8    5.1e-07   29.4   0.8    2.5  2  F-box       F-box domain
    0.00026   20.8   0.1    0.00026   20.8   0.1    2.6  3  F-box-like  F-box-like
     0.0026   17.6   0.2     0.0026   17.6   0.2    1.8  2  F-box_4     F-box
     0.0049   16.5   6.1      0.092   12.5   0.3    2.9  3  RPEL        RPEL repeat


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.8   1.1e-10   5.1e-07       3      44 ..     136     177 ..     134     181 .. 0.89
   2 ?    3.1   0.4      0.02        90      26      44 ..     212     230 ..     206     233 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.1e-10
                 HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH CS
       F-box   3 lsrLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwc 44 
                 l++LP+ev++h+L +L+ sdl+a +r+ + +r+l   + l++
  CCE29747.1 136 LDSLPNEVVLHVLGFLDMSDLVATSRTNWALRQLSLCPILHR 177
                 789******************************987666666 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.02
                 HCTT-HHHHHHHTTHHHHH CS
       F-box  26 lrrVSkgwrilidsdrlwc 44 
                  ++VS+++ +++ s+rl +
  CCE29747.1 212 TSFVSRRLARALVSIRLSR 230
                 799*********9999976 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   5.9e-08   0.00026       2      41 ..     137     175 ..     136     182 .. 0.88
   2 ?   -1.7   0.0      0.61   2.7e+03      32      43 ..     184     193 ..     181     196 .. 0.80
   3 ?   -0.8   0.2      0.33   1.5e+03      23      44 ..     211     231 ..     201     235 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.9e-08
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplL 41 
                 ++LP+E+ l+++ +L+ sdL++ +++    r++ l +  L
  CCE29747.1 137 DSLPNEVVLHVLGFLDMSDLVATSRTNWALRQLSLCP-IL 175
                 79*************************9999998644.66 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.61
  F-box-like  32 rrvaldtplLWr 43 
                 r+v   +plLW+
  CCE29747.1 184 REVL--PPLLWS 193
                 6777..99***7 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.33
  F-box-like  23 rlalVCrrWrrvaldtplLWrr 44 
                   + V+rr +r+  +  +L rr
  CCE29747.1 211 HTSFVSRRLARALVSI-RLSRR 231
                 5678999999988776.66555 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   5.8e-07    0.0026       4      40 ..     135     171 ..     132     181 .. 0.88
   2 ?   -3.4   0.3       1.9   8.7e+03      64      79 ..     301     319 ..     284     325 .. 0.53

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.8e-07
     F-box_4   4 sLssLPlevlqhiaslLDsfsLsqLslvskllrevcs 40 
                  L+sLP ev+ h++++LD   L+  s++++ lr+++ 
  CCE29747.1 135 LLDSLPNEVVLHVLGFLDMSDLVATSRTNWALRQLSL 171
                 699******************************9865 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.9
     F-box_4  64 swkikk...kvwefstlfs 79 
                 +w+ ++   +vw++++  +
  CCE29747.1 301 RWHESRgigRVWKLTKFWE 319
                 4433321114566655554 PP

>> RPEL  RPEL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.5       1.2   5.2e+03      10      14 ..      32      36 ..      32      36 .. 0.95
   2 !    6.5   0.0    0.0015       6.8       8      21 ..     195     208 ..     194     210 .. 0.89
   3 !   12.5   0.3   2.1e-05     0.092       2      16 ..     228     242 ..     227     249 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
        RPEL 10 PtreE 14
                PtreE
  CCE29747.1 32 PTREE 36
                9***9 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0015
        RPEL   8 hRPtreELvernIL 21 
                  RPt  +L+ r I+
  CCE29747.1 195 ARPTIADLKARRII 208
                 6***********98 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 2.1e-05
        RPEL   2 LerKLshRPtreELv 16 
                 L r+L+ RP +e+Lv
  CCE29747.1 228 LSRRLASRPPVEDLV 242
                 99************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2380.35
//
Query:       CCE29748.1  [L=468]
Description: uncharacterized protein CPUR_03595 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.021   15.1   0.0    1.4  1  zf-C2H2_jaz     Zinc-finger double-stranded RNA-binding
      0.027   14.6  20.4      0.047   13.8  20.4    1.3  1  Keratin_2_head  Keratin type II head
      0.063   13.0   8.5       0.12   12.1   8.5    1.4  1  TraT            Enterobacterial TraT complement resistance pr
        2.7    6.7   9.8       0.56    9.0   4.9    2.0  2  Nucleo_P87      Nucleopolyhedrovirus capsid protein P87


Domain annotation for each model (and alignments):
>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   4.7e-06     0.021       4      27 .]      33      56 ..      32      56 .. 0.98

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.7e-06
                 BTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz  4 CvlCdKyFksenaldnHlkSKkHK 27
                 C lC  + k e  +d+H++S +H+
   CCE29748.1 33 CTLCREQLKAEALWDAHISSQPHQ 56
                 ***********************6 PP

>> Keratin_2_head  Keratin type II head
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8  20.4     1e-05     0.047      31     120 ..     205     295 ..     164     309 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
  Keratin_2_head  31 gggvgagagagggF..gSrSlynlGGsksisisvagggsragsgfgfgggggggfglGfggGvglgfgagggvGggfGgggglvGgggfGgg 120
                     g+g+g + +agg F   S+S    G s  +s   a  +++++     ++++++   +G g+G+g+g gag g+G g G+g+g+  g+g G++
      CCE29748.1 205 GAGSG-TSSAGGYFnlQSQSRPQTGPSTPMSAAAAVASTSTTLREASSASSSSLAASGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAS 295
                     33333.223444443369999999*9999999988887766633222222222222344444444444444444444444433222333332 PP

>> TraT  Enterobacterial TraT complement resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   8.5   2.6e-05      0.12      84     164 ..     257     344 ..     232     383 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
        TraT  84 alkaGfgga...lagaaagaaigaanggsagaalggglvGglvgaiagalvedvtYl.mvvDvqikeka...kgvvkqssksnlkqge 164
                 ++++G g++   +aga+aga++ga +g++aga +g+g+ ++ ++a++ a ++++ ++ + +D+  +e     ++v++  + +n + + 
  CCE29748.1 257 LAASGAGAGagaGAGAGAGAGAGAGAGAGAGAGAGAGASSSSAAAATAAPIDESEWAaFEADIAATEVPydqDAVISAPAMTNEEAAA 344
                 3333333222025555555555555666667777777777777778888888888862679999999884422222222222222222 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2      0.07   3.1e+02     414     443 ..      78     129 ..      16     149 .. 0.49
   2 ?    9.0   4.9   0.00013      0.56     298     437 ..     297     467 ..     290     468 .] 0.80

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.07
  Nucleo_P87 414 s..........................sdededssdekevDkekerkRRreeDkdf 443
                 +                          s+ d   +d +  D+e+ rkR      d 
  CCE29748.1  78 EsapsgpppppldegsnarmvhkrklaSSTDA-AEDADMGDDEARRKR---GRPDV 129
                 22334444444444444444443333222222.344444455554444...44455 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00013
  Nucleo_P87 298 qslqspaqtpaperslqsPeqtparrkstkmteeslqsPaqtpawqtpattptretssdteaiksepektleeklreklpsdlsaqssvpdkkseasav 396
                 +s  +++ +p +e ++   e + a ++++ ++++ +  Pa t   ++ a+  +   +++ +a+ + +++  +e+ r+ l  +  ++  ++++ ++ +++
  CCE29748.1 297 SSAAAATAAPIDESEWAAFEADIAATEVPYDQDAVISAPAMTNEEAAAAKEAQDAAEAQSRAQVDLDIEYEKEEARRALEEEFEQMKGLEERVEKLKEM 395
                 3444455566699**************************999997777777777777777777777666666678888888888888888888888887 PP

  Nucleo_P87 397 lptekrkRrrarklqels...............................sdededssdekevDkekerkRRr 437
                  ++   +R r+ + ++ s                               + eded++de+e D+e +  R r
  CCE29748.1 396 RAAFLTQRSRSTRHDDGSegqkshlgaaaattkgevemldenlpdrwegEGEDEDEDDEEEEDDEWDLFRFR 467
                 77777777777777676678899999*********************9977888889999999999987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1697  (0.0946511); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 3290.35
//
Query:       CCE29749.1  [L=251]
Description: related to MED7-member of RNA Polymerase II transcriptional regulation mediator complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-58  196.9   0.0    4.1e-58  196.6   0.0    1.0  1  Med7      MED7 protein
      0.008   16.6   0.1      0.033   14.6   0.1    1.9  2  TBCC_N    Tubulin-specific chaperone C N-terminal domain


Domain annotation for each model (and alignments):
>> Med7  MED7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.6   0.0   4.6e-62   4.1e-58       2     191 .]      12     203 ..      11     203 .. 0.96

  Alignments for each domain:
  == domain 1  score: 196.6 bits;  conditional E-value: 4.6e-62
        Med7   2 saFPpPPpfyklfteenlkklkelkeeaekeeeeeedesaaeeqelelpkeLrvlipPeppkegeYrvFGenwsllkdklpsLeeqgieqly....... 93 
                 s+FP+PP f+k+ft+e +++++el+ + +    ++ ++s    ++  lp+eL +l+pP  p++g++r +G+++ l +++lp+Le+qgi +l        
  CCE29749.1  12 STFPNPPLFWKNFTPERVARIEELRGAFAGAGGSSGASSV--VRIPGLPEELVNLQPPLEPADGRWRLYGDQYML-DENLPTLEDQGIANLPnlalsas 107
                 89*************************9998888877775..5777899*************************6.*********************** PP

        Med7  94 eedesedrkkeLkkLlrslllnfleLlgillknPeqsefeekvedlrllliNmhhllNeyRphQAretlillleeqleekreeiekirkkceevkevl 191
                 ++d+++dr+ eLkkL++slllnfleL+g+l+++P +  +e+k++dlr+lliNmhh+lNeyRphQAre+ i+l++ +l+++r+e+ +ir++++++++vl
  CCE29749.1 108 KDDKHYDRAFELKKLAKSLLLNFLELVGTLSHCPAD--AEAKIQDLRTLLINMHHILNEYRPHQARESAIALMQSHLDQTRAETVAIRTQVDKARRVL 203
                 9*********************************77..9*******************************************************9986 PP

>> TBCC_N  Tubulin-specific chaperone C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.37   3.3e+03      33      51 ..      19      38 ..       3      52 .. 0.66
   2 !   14.6   0.1   3.6e-06     0.033      67     112 ..     143     189 ..     136     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.37
      TBCC_N 33 sFlkaFteek.aaieelles 51
                 F+k+Ft e+ a ieel  +
  CCE29749.1 19 LFWKNFTPERvARIEELRGA 38
                59999986652566666554 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.6e-06
      TBCC_N  67 eitaeiqeLqkllaessmfLpsYdlrsaqe.alskLkesleeareel 112
                 +++a+iq+L+ ll +  ++L++Y   +a+e a+  ++++l+++r+e 
  CCE29749.1 143 DAEAKIQDLRTLLINMHHILNEYRPHQAREsAIALMQSHLDQTRAET 189
                 7899************************9735788899999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1868.99
//
Query:       CCE29750.1  [L=866]
Description: uncharacterized protein CPUR_03597 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-25   89.2   0.0    3.8e-25   88.5   0.0    1.3  1  SPOC           SPOC domain
    6.7e-18   65.2   0.2      2e-17   63.7   0.2    1.8  1  TFIIS_M        Transcription factor S-II (TFIIS), central dom
      2e-08   34.0   8.7    3.8e-08   33.1   8.7    1.5  1  PHD            PHD-finger
  ------ inclusion threshold ------
        3.1    7.4   6.0        5.7    6.6   6.0    1.4  1  PHD_2          PHD-finger
        7.2    6.8   9.2         19    5.4   9.2    1.8  1  PHD_4          PHD-finger


Domain annotation for each model (and alignments):
>> SPOC  SPOC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   1.1e-28   3.8e-25       3     150 ..     503     658 ..     501     659 .. 0.90

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 1.1e-28
                 XXXXXX---EEEEEETTEEEEEEEEEE---------........-SEEEE-EEEEHHHHHHHHHH-S......EEEEEEEEESSGGGHHHHHHHHHHHH CS
        SPOC   3 lasklpvvWqGalslksvssfqvqahllsgdrslvs........pslLritqRlrldqvkkyldevsrri.tadllavalfpsdesdesgfaelvdYLk 92 
                 +  +  vvW+G+l+++s++ f++ a++++g +   s        p+ +++++R++ + + +yl++++ +  t d+ +v ++p++++++++f+ lvdY+ 
  CCE29750.1 503 ETLEPGVVWKGSLAMSSIADFEATAKHIGGANFA-SfgpwssliPKRMTVAGRIPQQSAIEYLCSLRYSSlT-DIIVVSITPTSADSQQDFKALVDYFT 599
                 6678899*************************88.346776667888***********************55.99999999****************** PP

                 TTTEEEE.....EE-TTS-EEEEE-S.......STHHHHTS.......-----SSEEEEEEE CS
        SPOC  93 sKqraGvvnlnksglnqngvlyifPpga....lcefaesllresapelekskddhLlivvvr 150
                 sK+r+Gv  + ++   +++++y++P++a    ++ef+ +l ++++p+ ++ ++++L+++v+r
  CCE29750.1 600 SKNRYGV--VGDKVAGNVRDTYLVPVPAgedgHPEFMLNLVDNYIPK-SRAEPMLLAVFVYR 658
                 *******..999999999********99****99************8.88877777777766 PP

>> TFIIS_M  Transcription factor S-II (TFIIS), central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.2   5.5e-21     2e-17      19     111 ..     263     358 ..     240     359 .. 0.79

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 5.5e-21
                 -.......-.--THHHHHHHHHHHHHHHT-----..-HHHHHHHHHHHHHS-TT-HHHHHTSSSS--STTTTS---TTTSS-HHHHHHHHHHHHHHHHT CS
     TFIIS_M  19 s....seaeeeedveelaaeiEealfekekkstd..kkykqkvrslvfNLkdkkNpeLrrrvlsgeispeklvkmspeElaseelkeereklekealee 111
                      ++++eee  e++a++iE+a+++  + +t+  ++y q+++sl fNLk  +N e  + +l+g+ +p+ l+ m++e+las e+++++++++ +a ++
  CCE29750.1 263 DfdlpEDTSEEEVSENYALQIERAVYD-THPTTKgqREYGQQIKSLTFNLK--NNLEVMQGLLHGAHTPSALAVMTSEQLASAEMQRQTAEMRARAEKQ 358
                 14443223337899*************.4555552367************6..****************************************999876 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   8.7   1.1e-11   3.8e-08       1      51 [.      56     107 ..      56     108 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.1e-11
                 SBTTTTS...TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   1 rCavCkk...ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 rC vC++   ++d +e +++C++C  w+H+ C++++  ++e+p+ +++Ce+C++
  CCE29750.1  56 RC-VCGAteqDEDSGEAWISCETCYAWQHNVCVGVSSFEDEIPD-NYWCERCRP 107
                 69.***9986777799*********************9999997.*******96 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.0    0.0016       5.7       5      36 .]      73     106 ..      70     106 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0016
       PHD_2   5 lsCdkCsvaVHasCYGvskesdgee..WlCrrCe 36 
                 +sC  C    H  C Gvs+ +d+ +  + C+rC+
  CCE29750.1  73 ISCETCYAWQHNVCVGVSSFEDEIPdnYWCERCR 106
                 99****************99998777899****6 PP

>> PHD_4  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   9.2    0.0053        19      20      67 ..      56     105 ..      35     106 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0053
       PHD_4  20 v......eeesetpsslmeCsvCyeivHpeClkekegegvvnedlpnsWeCpkC 67 
                        e+++++ ++ + C+ Cy   H  C+  +      ++++p ++ C +C
  CCE29750.1  56 RcvcgatEQDEDSGEAWISCETCYAWQHNVCVGVS----SFEDEIPDNYWCERC 105
                 0444444455688999****************994....588999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1359  (0.075799); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.46
# Mc/sec: 5635.29
//
Query:       CCE29751.1  [L=251]
Description: probable PRE9-20S proteasome subunit Y13 (alpha3) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-60  202.3   0.1    5.7e-60  202.1   0.1    1.1  1  Proteasome       Proteasome subunit
    3.1e-13   49.1   0.1    8.7e-13   47.7   0.1    1.8  1  Proteasome_A_N   Proteasome subunit A N-terminal signature
     0.0034   17.5   0.4      0.011   15.8   0.1    1.9  2  DUF5624          Domain of unknown function (DUF5624)
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.019   14.5   0.0    1.1  1  Nitrate_red_gam  Nitrate reductase gamma subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.1   0.1   1.3e-63   5.7e-60       2     190 .]      29     215 ..      28     215 .. 0.98

  Alignments for each domain:
  == domain 1  score: 202.1 bits;  conditional E-value: 1.3e-63
                 HHS-EEEEEEETTEEEEEEEEEEEETTEEEESSS.STSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   2 kkGttvvGikgkdgvvlaadkratagskllskst.veKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 ++++t++Gi +kdg+vlaa++++t  skll+++t +eK++ ++d++++a+aG++aDa++l+++ar+ aq+y  +y+++ip+e+lv+r+++++q+ytq++
  CCE29751.1  29 SHAGTAIGILAKDGIVLAAERKVT--SKLLEQDTsAEKLYVLNDNMICAVAGMTADANILINYARQAAQRYLRTYNEDIPCEQLVRRLCDLKQGYTQHG 125
                 799*********************..9999999989*************************************************************** PP

                 TTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 100 grrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                 g rpfgvs+++ag+d + + +Ly  +psG+y ++k a+++G +  +a+++l++ yked+tl+ea+ +avk+l+++++  kls+++ie+a++
  CCE29751.1 126 GLRPFGVSFIYAGWDPRRQFQLYLSNPSGNYGGWK-ATSAGANNASAQSLLKQDYKEDCTLTEACAMAVKVLSKTMDSTKLSSEKIEFATV 215
                 **********************************8.***************************************************9986 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.1   1.9e-16   8.7e-13       1      23 []       5      27 ..       5      27 .. 0.99

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 1.9e-16
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YD+ +t+FSP+GRL+QVEYA++A
      CCE29751.1  5 YDSRTTIFSPEGRLYQVEYALEA 27
                    9*********************9 PP

>> DUF5624  Domain of unknown function (DUF5624)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.6e-06     0.011       7      91 ..      25     104 ..      22     120 .. 0.84
   2 ?   -1.3   0.0      0.47   2.1e+03      77     100 ..     188     210 ..     170     222 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.6e-06
                 HHHHHTHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHHHHH-SS-HHHHS--GGGGGGHHHHHHHHHHHHHHHHHHHHHHHTT CS
     DUF5624   7 ltavSHlgpalayLaklkelgdeswrsaaekLlekikavrevnseelwrdkiaveafqgreekiaalvdYalslteeylervled 91 
                 l a+SH g+a+  Lak   + +++ r+ ++kLle+  ++ ++     ++++  + a +g +++ + l++Ya + +++yl++  ed
  CCE29751.1  25 LEAISHAGTAIGILAKDGIVLAAE-RKVTSKLLEQDTSAEKLY----VLNDNMICAVAGMTADANILINYARQAAQRYLRTYNED 104
                 78*************977655555.777888998887776664....4556679999***********************99887 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHHTTSS--SHHHH CS
     DUF5624  77 alslteeylervledaskldlesl 100
                 a++++ + l++ ++ ++kl+ e++
  CCE29751.1 188 ACAMAVKVLSKTMD-STKLSSEKI 210
                 67777777766553.444655554 PP

>> Nitrate_red_gam  Nitrate reductase gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.3e-06     0.019      83     160 ..      23      99 ..      13     110 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.3e-06
  Nitrate_red_gam  83 yqllal.vaGliagvlalvGlllLllRRltnkrvraatsasDkvvlllLllqillGllttlvsaldygseretispwlr 160
                      y l+a+  aG+++g+la  G++l   R++t+k +++ tsa  ++vl   ++  ++G+++     ++y  +r+ ++ +lr
       CCE29751.1  23 YALEAIsHAGTAIGILAKDGIVLAAERKVTSKLLEQDTSAEKLYVLNDNMICAVAGMTADANILINY--ARQAAQRYLR 99 
                      45555525899***********************************************999999988..5555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1808.69
//
Query:       CCE29752.1  [L=302]
Description: probable DPP1-diacylglycerol pyrophosphate phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-28   98.8   0.1      2e-28   98.8   0.1    2.1  2  PAP2      PAP2 superfamily


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   2.0     0.038   6.9e+02      64     103 ..      37      86 ..      32      89 .. 0.76
   2 !   98.8   0.1   1.1e-32     2e-28       2     133 ..     104     254 ..     103     257 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.038
        PAP2  64 afalalllalllrrkrkkig..........lvllalillllavlvalsRl 103
                 a+++++l++  ++r+++  +           ++ +++l+l+a+++ l+ l
  CCE29752.1  37 AWTALALFVTPFHRMFYINDlrisyphalhERVSVFWLFLYAFVTPLAIL 86 
                 56777777777788888877888899999988888888888888766665 PP

  == domain 2  score: 98.8 bits;  conditional E-value: 1.1e-32
        PAP2   2 llalllalalaalltsvlKdlvgrpRPfflaeetkldtqvstletses..........keakesfPSgHsafafalalllalllrrkrkkig....... 83 
                 +l ++++l+l+ +lt ++K++vgrpRP+ l+++++  t++++   + +          +++++sfPSgHs+fafa++ +l+l+l+   + +        
  CCE29752.1 104 YLPFAISLVLTSFLTDIVKNAVGRPRPDLLDRCHPAETTKPNVLVNMEvcetkdsfklQDGWRSFPSGHSSFAFAGLGYLSLYLAGQLHVFHhpaggrd 202
                 67899**********************************999998877*9999999999999999**************************9******* PP

        PAP2  84 ..lvllalillllavlvalsRlylgvHflsDvlaGlliGialaalayrlvqk 133
                   + ll+l +l+ a+lva+sR  +++H + Dv +G ++G ++a+++yr ++ 
  CCE29752.1 203 lgRALLCLSPLIGAALVAISRCEDYRHDVYDVCVGSVLGMSVAYWSYRRHWP 254
                 ***********************************************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2389.19
//
Query:       CCE29753.1  [L=617]
Description: uncharacterized protein CPUR_03600 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-11   44.2   8.7    1.2e-10   41.3   0.1    2.9  3  FF        FF domain
    2.5e-08   33.9   2.1    5.7e-08   32.7   2.1    1.7  1  WW        WW domain
  ------ inclusion threshold ------
       0.04   14.4   3.3       0.23   12.0   0.1    2.8  2  APG6_N    Apg6 coiled-coil region
       0.76    9.1   5.7        1.9    7.9   5.7    1.6  1  GBP_C     Guanylate-binding protein, C-terminal domain


Domain annotation for each model (and alignments):
>> FF  FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.1   2.8e-14   1.2e-10       4      51 .]     337     385 ..     334     385 .. 0.95
   2 !    6.2   2.2    0.0026        12       4      51 .]     407     453 ..     404     453 .. 0.84
   3 ?   -2.8   0.0       1.7   7.8e+03       3      13 ..     465     475 ..     463     479 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 2.8e-14
                 HHHHHHHHHCSSS-TTSSHHHHHH..HCTTSCCCHHGTSHHHHHHHHHHH CS
          FF   4 eaFkeLLkehkeitpkstWseikk..ilenDpRYlalldkseReelFedy 51 
                   F+ LL++++ i+p+s W+++++   ++nDpRY+al + + R+++++d+
  CCE29753.1 337 HLFRDLLNDLH-INPYSPWEKLLEdgNIINDPRYTALSTTRARKQCWDDW 385
                 57*********.*************************************8 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0026
                 HHHHHHHHHCSSS-TTSSHHHHHHHCTTSCCCHHG.TSHHHHHHHHHHH CS
          FF   4 eaFkeLLkehkeitpkstWseikkilenDpRYlal.ldkseReelFedy 51 
                  a+ +LL+e+   tpk  W e+k++ ++++  +   l++++Re+++ ++
  CCE29753.1 407 IAYLALLQEKA--TPKLYWPEFKRKYKKEDPMRDAkLSDKDREKAYREH 453
                 5899******8..*************66666655568999999999887 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.7
                 HHHHHHHHHHC CS
          FF   3 reaFkeLLkeh 13 
                 +++  +LLke 
  CCE29753.1 465 KADLTALLKEQ 475
                 789999***97 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   2.1   1.3e-11   5.7e-08       1      31 []      19      48 ..      19      48 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.3e-11
                X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31
                L pGW e++ p+ G +YYy+ eT++++  +P
  CCE29753.1 19 LLPGWSEHTAPT-GHKYYYHAETKQSTYHRP 48
                569*****9999.****************99 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.9     0.093   4.2e+02      31      77 ..     426     475 ..     392     482 .. 0.72
   2 ?   12.0   0.1   5.2e-05      0.23      48     105 ..     541     598 ..     512     612 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.093
      APG6_N  31 flkklkkekkeeek...qdeeleeleeeleklekeeeelleeLkeleker 77 
                 f +k kke++  ++   +++ +++ +e +++l+   ++l + L +l ke+
  CCE29753.1 426 FKRKYKKEDPMRDAklsDKDREKAYREHVARLKLPTARLKADLTALLKEQ 475
                 44445555444433775445555666669999999999999999998886 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 5.2e-05
      APG6_N  48 eleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwrey 105
                 ++ e ++e+e+ +k e++l++  +++e+er++ e+++aa ++ l++ e e e  +r  
  CCE29753.1 541 DDPEMKKEIEARQKRERALEARNRAVEEERRRRERDVAASKARLRDEETELEVAMRVG 598
                 6678999***********************************9999999988877765 PP

>> GBP_C  Guanylate-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.7   0.00041       1.9     201     258 ..     544     601 ..     541     610 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00041
       GBP_C 201 akekeieaeqakaeaaeaekelleekqkeeeqrmeakeksleehvkqLkekleeerek 258
                 + +keiea q+++ a+ea ++++ee+++++e+ ++a + +l+++ ++L+  ++  ++ 
  CCE29753.1 544 EMKKEIEARQKRERALEARNRAVEEERRRRERDVAASKARLRDEETELEVAMRVGKRG 601
                 5689********************************************9999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1149  (0.0640861); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4248.47
//
Query:       CCE29754.1  [L=734]
Description: uncharacterized protein CPUR_03601 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-16   59.1   0.0    6.2e-16   58.2   0.0    1.4  1  Fungal_trans    Fungal specific transcription factor domain
    3.9e-05   23.7   4.3    6.6e-05   22.9   4.3    1.3  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
        3.4    8.2   8.0        2.7    8.5   3.9    2.8  2  RNA_pol_Rpb1_R  RNA polymerase Rpb1 C-terminal repeat


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0     1e-19   6.2e-16      41     192 ..     322     455 ..     313     474 .. 0.86

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1e-19
  Fungal_trans  41 lailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvg 137
                    a la+G++++ ++    + s  s s e+  ++ ra++l+ ++++  ++ +  + sL l+++y+  + + +++++++  a++++  lg h       
    CCE29754.1 322 HAALAVGCQSTTTQPPPRSGSGPSLS-EP--YYARAAMLLGNPLEIKRRTIGDVASLALMSFYLVETNRLDAAYMYVTAAMHISIMLGAH--H---- 409
                   57788999888887777777777666.32..3579999999***************************************7777777777..2.... PP

  Fungal_trans 138 kkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddl 192
                          w++  e+ +R++w++++lD++++  +Grpp++ d+ i+lpLP dd  +
    CCE29754.1 410 ------GWVD--ERGKRVFWSVYCLDRWLSCLTGRPPTMTDEAIRLPLPADDP-M 455
                   ......4777..8999***********************************98.4 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   4.3   1.1e-08   6.6e-05       5      34 ..      64      91 ..      63      96 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.1e-08
                HHHHCT---STSSSS-HHHHHCTHHHCCCC CS
     Zn_clus  5 nCrkkKvKCdakkPaCsnCkklnleCtfys 34
                +C  +++KC++++P Cs+C++   +C+ y+
  CCE29754.1 64 SCNVRRIKCSGEHP-CSQCATTARDCV-YP 91
                7*************.************.76 PP

>> RNA_pol_Rpb1_R  RNA polymerase Rpb1 C-terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.9   0.00045       2.7       2      10 ..     219     227 ..     219     229 .. 0.93
   2 ?   -0.3   0.1      0.28   1.7e+03       3      12 ..     297     306 ..     297     306 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00045
  RNA_pol_Rpb1_R   2 PTSPaySPt 10 
                     PTSP+ySP 
      CCE29754.1 219 PTSPHYSPA 227
                     9*******5 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.28
  RNA_pol_Rpb1_R   3 TSPaySPtSP 12 
                     T P ++P SP
      CCE29754.1 297 TVPVHAPVSP 306
                     668899***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5043.51
//
Query:       CCE29755.1  [L=619]
Description: related to phosphoribosyl-5-aminoimidazole carboxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-60  203.6   1.5    3.9e-60  201.7   0.1    2.6  3  AIRC             AIR carboxylase
    1.1e-47  161.8   0.0    2.2e-47  160.8   0.0    1.5  1  ATP-grasp        ATP-grasp domain
    8.7e-13   47.8   0.0      2e-12   46.6   0.0    1.6  1  PurK_C           Phosphoribosylaminoimidazole carboxylase C-t
    1.4e-06   28.0   0.0    2.4e-06   27.3   0.0    1.3  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
     0.0041   16.7   0.1       0.02   14.5   0.0    2.2  2  PrpR_N           Propionate catabolism activator
  ------ inclusion threshold ------
      0.038   14.5   0.1        1.2    9.7   0.0    2.5  2  XdhC_C           XdhC Rossmann domain
      0.079   12.2   0.0       0.22   10.8   0.0    1.7  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> AIRC  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.94   2.4e+03       5      30 ..      51      76 ..      50      82 .. 0.88
   2 ?   -1.1   0.0      0.48   1.2e+03      83     124 ..     228     266 ..     221     270 .. 0.66
   3 !  201.7   0.1   1.5e-63   3.9e-60       2     147 ..     450     595 ..     449     596 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.94
                EESSGGGHHHHHHHHHHHHHTT-EEE CS
        AIRC  5 imGSdsDlevmkkaaeilkelgveye 30
                ++GS  D   +++ a++++ ++ve+e
  CCE29755.1 51 VTGSFKDAAKIRELASHCDVMTVEIE 76
                67999999999999999999999886 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.48
                 EEE--STTCCHHHHHHHHT--T.TS--EE-SSTHHHHHHHHHH CS
        AIRC  83 vPvkskalkgldsllSivqmPs.gvpvatvaigkaknAallAa 124
                  Pv +  +   d++ S v mP+ gv+      +ka+  a++ +
  CCE29755.1 228 YPVVE--TVHEDNICSKVFMPPrGVSAEVC--EKAQKVAMSVV 266
                 34444..6678999******9835554443..47777777665 PP

  == domain 3  score: 201.7 bits;  conditional E-value: 1.5e-63
                 EEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHCHTTTEEEEEEEEESS--HHHHHHHHSSS-EEEEEE--STTCCHHHHHHHH CS
        AIRC   2 VgiimGSdsDlevmkkaaeilkelgveyevrvvSahrtpeelleyaeeaeerglkviIagAGgaahLpgvvaslttlPVigvPvkskalkgldsllSiv 100
                 V + mGSdsDl+v+k+ ++il+++gv++ev+++Sahrtp+++++ a+ea++rglkviIa+AGgaahLpg++a++t+lPVigvPvk+++l+g dsllSiv
  CCE29755.1 450 VLVTMGSDSDLPVLKAGIDILNQFGVPWEVDITSAHRTPDKMAQRAREAADRGLKVIIAAAGGAAHLPGMLAAYTPLPVIGVPVKATHLDGYDSLLSIV 548
                 89************************************************************************************************* PP

                 T--TTS--EE-SSTHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHH CS
        AIRC 101 qmPsgvpvatvaigkaknAallAaqilalkdeelaekleeyreelke 147
                 qmP+gvp atvai++++nAallA++ l++  +el +k+++y+ ++++
  CCE29755.1 549 QMPRGVPTATVAINNSTNAALLAIRFLGAFMPELLQKMKDYQLDMEQ 595
                 ******************************************99876 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.0   8.5e-51   2.2e-47       3     170 ..     129     306 ..     127     307 .. 0.92

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 8.5e-51
                 TTT--B-EEEEECCHH....HHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHCGTTCEEEEE----SEEEEEEEEE..ETTC-...EEE CS
   ATP-grasp   3 klglpvprflaveske....eleeaaeelglpvvvKarrlgydGkGqsvvrseedleqalealkeekvivEefvpfekElsvlvvr..saeGe...taf 92 
                 + g+pv+  +a+es +    ++e+a +++g+p+++Kar+ +ydG+G++ v s +dleqa +++++ ++++E++vpfe El+v+vvr  +  G+   ++ 
  CCE29755.1 129 RRGVPVAAQMAIESGDamreSMEAASAKFGYPWMLKARTDSYDGRGNFKVSSWADLEQAHREFGHLSCYAEKWVPFELELAVMVVRteDDAGQlkrVVP 227
                 6789999999999988666678889999**********************************************************6556687666789 PP

                 --EEEEEEETTEEEEEEEC.EE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS--GGGGGHHHH CS
   ATP-grasp  93 ypvvetvqedgilrlsvap.aevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRpHnsGhvtlda 170
                 ypvvetv+ed+i+  ++ p   vs++  +ka+++a  +ve+L g GvfavE+F++++g++ +nE apRpHnsGh ++++
  CCE29755.1 228 YPVVETVHEDNICSKVFMPpRGVSAEVCEKAQKVAMSVVEHLWGRGVFAVEMFLTREGDITFNECAPRPHNSGHASIES 306
                 **************998762669999*************************************************9986 PP

>> PurK_C  Phosphoribosylaminoimidazole carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   7.7e-16     2e-12       1      47 [.     336     389 ..     336     397 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 7.7e-16
      PurK_C   1 avMvNlLGedae.......eklee....llaipgahlHlYgKeearpgRKmGHitvvg 47 
                 ++M+N+LG ++        e   +    + +   +++HlYgK+ ++p RK+GHitv+g
  CCE29755.1 336 SIMINILGGASPdshlalvE---KaksmYGNKTAVYVHLYGKD-SKPSRKIGHITVTG 389
                 79*******99766665552...144457888889********.************98 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   9.2e-10   2.4e-06       3     176 ..     128     296 ..     126     313 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 9.2e-10
                      HHTT--B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSS.TTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--.ESEEEEEEEEETS CS
  Dala_Dala_lig_C   3 kaaGlpvvpyvvlekeeakeekkellekveeelgypvfVKpareG.SSvGvskveseeelkeaieeafkydekvlvEeai.egreievavlgne 94 
                      ++ G+pv++ +++e+ +a +e+   +e+  +++gyp + K+        G  kv+s+++l++a +e  +   +   E+++    e+ v v+   
       CCE29755.1 128 SRRGVPVAAQMAIESGDAMRES---MEAASAKFGYPWMLKARTDSyDGRGNFKVSSWADLEQAHREFGHL--SCYAEKWVpFELELAVMVVR-T 215
                      6789*************99999...99*************85543146799************9998765..6789****545566666666.5 PP

                      SCEEEEEEEEE-SSSSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS- CS
  Dala_Dala_lig_C  95 klevsevgeivvkkgfydyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlP 176
                      +  + +++++v+   +   ++ ++  +  ++ p  +++ev ek q++a+ + + l +rG+  v +flt+eg+i +nE  + P
       CCE29755.1 216 EDDAGQLKRVVPYPVVETVHEDNI-CSKVFMPPRGVSAEVCEKAQKVAMSVVEHLWGRGVFAVEMFLTREGDITFNECAPRP 296
                      567899999999999988999997.556678899*******************************************98877 PP

>> PrpR_N  Propionate catabolism activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.56   1.4e+03      82     110 ..      60      88 ..      43      97 .. 0.76
   2 !   14.5   0.0   7.9e-06      0.02       5      81 ..     479     563 ..     477     612 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.56
      PrpR_N  82 iikglktlselldldieiytinseeeaea 110
                  i++l++ ++++ ++ie++  +  ee+++
  CCE29755.1  60 KIRELASHCDVMTVEIEHIDTEVLEEIDT 88 
                 56777888888888888888887777765 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 7.9e-06
      PrpR_N   5 ldievvegdleeavelakeleaegvdviiSrGgtae....llrkhvsvPVveikvs.....gyDilralkqakklgekialvgfen 81 
                 +di+  + + ++ ++ a+e++++g +vii++ g a+    +l + +++PV+ ++v+     gyD l ++ q+ +     a v+ +n
  CCE29755.1 479 VDITSAHRTPDKMAQRAREAADRGLKVIIAAAGGAAhlpgMLAAYTPLPVIGVPVKathldGYDSLLSIVQMPRGVP-TATVAINN 563
                 7888889999999****************98777764555799**********985222225666666666555444.45555555 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00045       1.2       3      65 ..      10      87 ..       8     113 .. 0.74
   2 ?    2.1   0.0       0.1   2.6e+02      31      65 ..     424     467 ..     396     513 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00045
                EE--STTHHHHHHHHHHHTEEEEEEES-GGGG.........-GGG-TT-SE.............-EEEE--S-H.HHHHHHHHHHS CS
      XdhC_C  3 ifGaghvaqalarlaaalgfrvtvvdpreefa.........tkerfpeade.............tavvvlthdh.klDaealeaal 65
                ++G+g+ ++ l++ +a l+ +++++d+++  a                  +             +++ v+t +  ++D+e+le++ 
  CCE29755.1 10 LLGGGQLGRMLCEAGAPLNAQIVILDAEKCPAkqinsnenhV--------TgsfkdaakirelaSHCDVMTVEIeHIDTEVLEEID 87
                78*************************995443555544443........144555556888996666777665378999999876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.1
                 GGGG-GGG-TT-SE.........-EEEE--S-HHHHHHHHHHHS CS
      XdhC_C  31 eefatkerfpeade.........tavvvlthdhklDaealeaal 65 
                 +++a ++  p+a++         t +v++t + + D ++l+a +
  CCE29755.1 424 PQAAVPAASPAAAAttktkrpqgTPLVLVTMGSDSDLPVLKAGI 467
                 4334444444333366677788899***************9877 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.5e-05      0.22      31      95 ..       8      71 ..       3      81 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.5e-05
                 EEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEE CS
  AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvv 95
                 v  +GgG  G    ++ + l+a++++lD ++  ++q++s +++ v+   +++++++e ++++dv+
   CCE29755.1  8 VGLLGGGQLGRMLCEAGAPLNAQIVILDAEKCPAKQINSNENH-VTGSFKDAAKIRELASHCDVM 71
                 5579***********************************9999.*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4706.66
//
Query:       CCE29756.1  [L=546]
Description: related to serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-48  163.9   0.0    2.7e-47  161.6   0.0    1.8  1  Peptidase_S28  Serine carboxypeptidase S28


Domain annotation for each model (and alignments):
>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6   0.0   1.5e-51   2.7e-47       3     423 ..      58     505 ..      56     510 .. 0.73

  Alignments for each domain:
  == domain 1  score: 161.6 bits;  conditional E-value: 1.5e-51
  Peptidase_S28   3 lDhFdas......nkrtfqqryfvndqfyknggpiflyiGgegslsasw..vsngeilklAkefgAlvlslEHRfYGqSiPvkdlstenlrylsse 90 
                    +DhF+++       +  f+ ry+v + +y++ggp+ +   ge +++ +    ++g    lAk+ g+  + lEHR+YG+S+P+++++t++ r+l++ 
     CCE29756.1  58 IDHFHNEtkyephSDGYFNLRYMVDASHYQEGGPVIILHSGESEIEGRLsyLEHGIASILAKATGGVGIVLEHRYYGESWPTNETDTKSYRFLTTD 153
                    67776651111115678******************9999999999876511455578889************************************ PP

  Peptidase_S28  91 qaLaDlasfikalk....qkfk.lsssskwitfGgSYsgsLaawarkkyPelvvgavaSSaPllakvdfkeylevvetslakvagecakaveqgfa 181
                    qaLaD+a+f k lk    ++++ ++  ++ i++GgSY+g  +a ark+yPe+  ga++SS+      df++y e   +      g+c   +++ ++
     CCE29756.1 154 QALADMAYFSKNLKipglEQHNlTAPGTPHILYGGSYAGGFVAIARKLYPEVFWGAISSSGVTAVIDDFWQYTEAARH---FSPGDCSPTIQNLTD 246
                    **********999876664554267799*********************************9999999****986432...344579999999999 PP

  Peptidase_S28 182 eveellktkegrqalkeelqlcskldektdkdvakffsniasefqgvvqysydgkanaalsaisikelCklllna..................... 256
                     +++ l++++ +++   e++  + l +  + +    f+++  ++qg  q   d++   a +++   + C +++++                     
     CCE29756.1 247 VIDKQLLSGDKKRE--DEIKSLFGLRDLWNDE----FAALLLQAQGSLQ---DTNWIPAKDDTGFGTFCAVVSSDaalfastahlrqrvrtavqda 333
                    99998888764443..4444444444432222....4444555555555...45555555666666666666633333443444444555555555 PP

  Peptidase_S28 257 ..sktdlilrvevliqlfkslnqk.slnlstadisyqlanaekkdsslesladdrqWlyqtCtEfgfyqttds....eaqlfgskvpvelyidlCe 345
                      ++++l  r+ ++i + +++ +k + +  +++ s ++++a+   +     + +r WlyqtCtE g+++ + s    +  + +  +++e+    C 
     CCE29756.1 334 gyTAEPLTSRMLNFIGFVRNMVKKqLKESGCTKASRECLSARLATDD-PRHDWSRSWLYQTCTEWGYFVNGAStpkdRLSMISRALGLEYSSYGCK 428
                    55666777777666665555555537888899999899998888887.34666***************9988866666777788888888888888 PP

  Peptidase_S28 346 dvFgasynskkvsqavkatnskYGgadnpkatnvvfvnGalDPWhalg......lkkstdssvvpllikgaahcaDmypasssd 423
                      F+       +   + ++ +k+Gg +n++  +v +++G+ DPW+a g        +++  s++  li+ + h+ D y+ s+ d
     CCE29756.1 429 LSFNI------TTRPDVNIINKHGG-FNFSYPRVALIDGKQDPWRAGGshamglPGRESTVSEPFELIDWGVHHWDEYGLSEDD 505
                    88832......33334455667999.******************9888532112234555566667899999999988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4110.94
//
Query:       CCE29757.1  [L=545]
Description: related to serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-46  159.3   0.0    1.2e-45  156.1   0.0    1.9  1  Peptidase_S28  Serine carboxypeptidase S28
  ------ inclusion threshold ------
       0.13   11.4   0.1       0.22   10.7   0.1    1.2  1  DUF2920        Protein of unknown function (DUF2920)


Domain annotation for each model (and alignments):
>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.1   0.0   1.3e-49   1.2e-45       3     423 ..      57     504 ..      55     509 .. 0.72

  Alignments for each domain:
  == domain 1  score: 156.1 bits;  conditional E-value: 1.3e-49
  Peptidase_S28   3 lDhFdas......nkrtfqqryfvndqfyknggpiflyiGgegslsasw..vsngeilklAkefgAlvlslEHRfYGqSiPvkdlstenlrylsse 90 
                    +DhF+++       +  f+ ry+v +  y++ggp+ +   ge +++ +    ++g    lAk+ g+  + lE R+YG+S+P+ +++ e+ r+l++ 
     CCE29757.1  57 IDHFHNEtkyephSDGHFNLRYMVDASNYQEGGPVIILHSGESEIEGRLsyLEHGIASILAKATGGVGIVLEQRYYGESWPTDETHIESYRFLTTD 152
                    67776551111115678******************9999999999876511455578889************************************ PP

  Peptidase_S28  91 qaLaDlasfikalk....qkfk.lsssskwitfGgSYsgsLaawarkkyPelvvgavaSSaPllakvdfkeylevvetslakvagecakaveqgfa 181
                    qaLaD a+f k lk    ++++ ++  ++ i++GgSY+g L+a ark+yP++  ga++SS+   a  df++y e   +      g+c   +++ ++
     CCE29757.1 153 QALADTAYFSKNLKipglEQHNlTAPGTPHILYGGSYAGGLVAIARKLYPDVFWGAISSSGVTAAIDDFWQYTEAARH---FSPGDCSPTIQNLTD 245
                    **********999876664554267799********************************************986433...334569999999999 PP

  Peptidase_S28 182 eveellktkegrqalkeelqlcskldektdkdvakffsniasefqgvvqysydgkanaalsaisikelCklllna..................... 256
                     +++ l++++ +++   e++  + l +  + ++a +  + ++ +q++   +       a +++   + C +++++                     
     CCE29757.1 246 VIDKQLLSGDKKRE--DEIKSLFGLRDLWNDEFAALLLQAQGSLQNANWIP-------AKDDTGFGTFCAVVSSDaalfastahlrqrvhtavqda 332
                    99988887764443..34444444444433334444444444443333222.......22233333333333322222222223333344444444 PP

  Peptidase_S28 257 ...sktdlilrvevliqlfkslnqkslnlstadisyqlanaekkdsslesladdrqWlyqtCtEfgfyqttds....eaqlfgskvpvelyidlCe 345
                        ++      + + ++ k++nq++  + + + s ++++++   +   + ++ r WlyqtCtE g+++ + s    +  + +  +++e+    C 
     CCE29757.1 333 gyaAEPLTSRMLNLIGFVKKMVNQQLRGNRCVKASRECLSERFATDD-PHHDGGRSWLYQTCTEWGYFVNGAStpkdRLSMISRAFGLEYSSYDCK 427
                    44244444444566677888889999999999999999999888777.56899***************9988878778899999************ PP

  Peptidase_S28 346 dvFgasynskkvsqavkatnskYGgadnpkatnvvfvnGalDPWhalg......lkkstdssvvpllikgaahcaDmypasssd 423
                      F+ +      +  v+ + +k+Gg +n++  +v f++G+ DPW+a g        +++  s++  li+ +ah+ D y+  ++d
     CCE29757.1 428 LSFNITT-----RPDVN-IINKHGG-LNFSYPRVAFIDGKQDPWRAAGthamglPGRESTPSEPFELIDWGAHHWDEYGLGEAD 504
                    9993332.....33444.4557899.9*****************8887432112235566667777999999999988876666 PP

>> DUF2920  Protein of unknown function (DUF2920)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   2.4e-05      0.22     179     215 ..     179     215 ..     167     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.4e-05
     DUF2920 179 dlpviliGgsyGGYlalLiaKiaPwyvdgvlDnssva 215
                 ++p il Ggsy G l  ++ K+ P ++ g +  s+v+
  CCE29757.1 179 GTPHILYGGSYAGGLVAIARKLYPDVFWGAISSSGVT 215
                 789****************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 4546.16
//
Query:       CCE29758.1  [L=234]
Description: uncharacterized protein CPUR_03605 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-15   55.1   1.1    1.2e-13   50.9   0.1    2.4  3  DUF2456   Protein of unknown function (DUF2456)


Domain annotation for each model (and alignments):
>> DUF2456  Protein of unknown function (DUF2456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.0    0.0086   1.5e+02      14      44 ..      29      59 ..      21      74 .. 0.79
   2 ?   -2.4   0.0       0.3   5.3e+03      33      43 ..      90     100 ..      66     105 .. 0.65
   3 !   50.9   0.1   6.9e-18   1.2e-13      20      94 ..     148     222 ..     136     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.0086
     DUF2456 14 enksilvnfiewlvskairglllsviiflvl 44
                + +++l +f+  l++ ai g+++s+++ +++
  CCE29758.1 29 SAEFNLGHFLYLLCRDAIPGMVVSAAVNMAI 59
                66778889999*************9987765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.3
     DUF2456  33 glllsviiflv 43 
                  ++ ++i++++
  CCE29758.1  90 IFVHCIITWFL 100
                 34455666654 PP

  == domain 3  score: 50.9 bits;  conditional E-value: 6.9e-18
     DUF2456  20 vnfiewlvskairglllsviiflvlWpvtigilagigkklgsdyyfnntwapqviKlvygvvlglitnPiiaila 94 
                 ++ ++w+ ++++r+l+++ ++fl++Wp++++ l   g++  +d+ +  +wapq++K   g +lgl+t+Pii+++ 
  CCE29758.1 148 MDSLKWIARHLVRALVFASMVFLTFWPISLIPLILSGDRDETDFTYRRMWAPQIFKTTLGGLLGLLTSPIISMIW 222
                 66789************************99888777777779*****************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1696.64
//
Query:       CCE29759.1  [L=114]
Description: uncharacterized protein CPUR_03606 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 905.42
//
Query:       CCE29760.1  [L=115]
Description: uncharacterized protein CPUR_03607 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 926.48
//
Query:       CCE29761.1  [L=417]
Description: related to cAMP-independent regulatory protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-44  151.5   0.8    7.4e-37  127.2   0.1    2.4  2  Gti1_Pac2  Gti1/Pac2 family


Domain annotation for each model (and alignments):
>> Gti1_Pac2  Gti1/Pac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.1   4.1e-41   7.4e-37       1      90 [.       3      91 ..       3     114 .. 0.88
   2 !   23.2   0.1   3.3e-09     6e-05     152     181 .]     116     146 ..      91     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 4.1e-41
                SEES---SHHHHHHHHHHHHTTSS---SS---HHHHHHHSSTTEEEEEEHHHH--SS---S--B---EEETTEEEEEB------------ CS
   Gti1_Pac2  1 tfkgyiettkdalllieavlegilkrvtrRlkekErkeliksGsvFvfeeeesgikRWTDGvsWSpSrilgnfLvYreldkkrakkkkkk 90
                t++gy++t +da+ l+ea++ g+l+rv+rRl+ekEr+  i sGsvFv++e+e+g++RWTDG sWS Sr++g+fL+Yre++ kr     ++
  CCE29761.1  3 TYHGYVRTPTDAIKLFEACRLGLLPRVQRRLSEKERQ-SICSGSVFVWDEREAGMRRWTDGKSWSASRVSGSFLTYREMEGKRGGGFGNA 91
                8************************************.*****************************************98876554444 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 3.3e-09
                 ---------EEEEEEEE.EETTTEEEEEEE- CS
   Gti1_Pac2 152 sykfkkdgLvKkTisvt.lkgkelhlisYyk 181
                  y++k dgL+K+++s+t  +g++lhlisYy+
  CCE29761.1 116 GYRYKPDGLMKQSFSITtASGQHLHLISYYS 146
                 399************98578999*******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3507.79
//
Query:       CCE29762.1  [L=417]
Description: related to monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-12   46.6   0.7    4.4e-09   36.0   0.2    3.0  2  FAD_binding_3  FAD binding domain
     0.0062   16.7   0.5      0.013   15.7   0.1    1.8  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0097   15.7   1.0      0.061   13.2   0.0    2.5  3  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas
  ------ inclusion threshold ------
      0.024   14.3   0.5        0.2   11.2   0.1    2.2  2  DAO            FAD dependent oxidoreductase
      0.029   14.0   0.1      0.047   13.3   0.1    1.3  1  ApbA           Ketopantoate reductase PanE/ApbA
       0.13   12.5   0.0       0.34   11.2   0.0    1.7  1  TrkA_N         TrkA-N domain


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0021       6.2       3      33 ..       7      37 ..       5      50 .. 0.82
   2 !   36.0   0.2   1.5e-12   4.4e-09     153     340 ..     162     377 ..      94     380 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0021
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekr 33
                   ++lI GaG +Gl+la+ L++a +   + e+ 
     CCE29762.1  7 PILICGAGVVGLTLAHGLKKANIPFQIYERD 37
                   589***************9998877777765 PP

  == domain 2  score: 36.0 bits;  conditional E-value: 1.5e-12
                    EEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEEEEEC-SCCCTTC....................CEEEEECCTTEEEEEECCETEEEEEE CS
  FAD_binding_3 153 vrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlfdadlsdivep....................lvlilsaesrgvmviPlentlerfyv 228
                     +   lvGaDG +S +rk l  e + ++ + ++++++v ++   +  v+p                    +v + ++++   + +  e+ + ++ +
     CCE29762.1 162 ADGSLLVGADGSNSDTRKFLVPEAHDNHAL-PVRLVGVAVEMTPE-QVKPlrdidpllfqgchpvtghflWVSMMETPEVNGTKGTAEE-RYQVQI 254
                    456789999999999999998887777755.99999999887555.3444577877666655555555443333333333335555555.333344 PP

                    EEECCE-GGGSCCCHHHHHHHHHHHHHHTT......SSCEE..EEEEEEEEEE..EEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHH CS
  FAD_binding_3 229 qvearaekeersekfteeevkarlreivge......ktldv..eieevsawtv..aqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnL 314
                    +v+++ +  +++ +  ++  +a++++  g+       t+d   e   +   ++  +  +  + r+grv l+GDAaH+++   G   N +i Da++L
     CCE29762.1 255 IVSWMFKGPQDEVPAVPAARIAEMKRRAGDfhpllrRTVDSipETAPILEIGIqdWPCLDWDNRQGRVTLVGDAAHAMTMFRGEAANHGILDAYKL 350
                    4555555555544444444444444444331111111222211112222233300344555679******************************** PP

                    HHHHHHH.HTTSS-GGGGHHHHHHHHH CS
  FAD_binding_3 315 awkLaav.lkGeAkeelLdtYeeerra 340
                    + +L +   ++   ++ +d+Ye+e r+
     CCE29762.1 351 VQQLKKIhARELSLPSGIDAYETEMRD 377
                    ****9752677788999****999876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   4.4e-06     0.013       1      31 [.      10      40 ..      10      51 .. 0.92
   2 ?   -3.7   0.0         5   1.5e+04      26      34 ..     374     382 ..     373     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.4e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31
                   I GaG+ Gl++A+ L+ka++  +++e+ +++
     CCE29762.1 10 ICGAGVVGLTLAHGLKKANIPFQIYERDEHI 40
                   67*************************9998 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5
                    -SSSSSSGG CS
  NAD_binding_8  26 ekrdrlGGr 34 
                    e+rdr+GG+
     CCE29762.1 374 EMRDRTGGD 382
                    89*****95 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.95   2.8e+03       7      20 ..      11      24 ..       4      28 .. 0.71
   2 ?   -0.8   0.1      0.48   1.4e+03      44      58 ..     148     162 ..     138     180 .. 0.71
   3 !   13.2   0.0   2.1e-05     0.061      40      74 ..     312     347 ..     305     351 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.95
                 GGHHHHHHHHHHHH CS
  ACP_syn_III  7 CsgfvyalsvAdal 20
                 C + v++l +A++l
   CCE29762.1 11 CGAGVVGLTLAHGL 24
                 77777777777765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.48
                  TTHHHHTTB-EEEEE CS
  ACP_syn_III  44 kdrstavlfGDGAgA 58 
                  + r   v+f+DG  A
   CCE29762.1 148 DGRLVRVNFSDGSSA 162
                  457778999999866 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 2.1e-05
                  CS-TTTHHHHT.TB-EEEEEEEEEEESSSSCEEEEE CS
  ACP_syn_III  40 ilDwkdrstav.lfGDGAgAvvleaseeegarilds 74 
                  +lDw++r+  v l+GD+A A+ + ++e  +++ild+
   CCE29762.1 312 CLDWDNRQGRVtLVGDAAHAMTMFRGEAANHGILDA 347
                  79**996654449*************9999999985 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   6.6e-05       0.2       2      42 ..       8      48 ..       7     117 .. 0.81
   2 ?    1.1   0.0     0.078   2.3e+02     174     299 ..     146     289 ..     116     337 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.6e-05
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEE CS
         DAO  2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsg 42
                ++i G+G++Gl+ A+ L +++    ++e+++ +   a g+ ++
  CCE29762.1  8 ILICGAGVVGLTLAHGLKKANipFQIYERDEHID--ARGHGWA 48
                89***************88877899999995544..5555554 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.078
                 EEETCEEEEEEECTEEEEEEEE..EEE--GGGHH...HHHTT.CTT.TSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE.....EEETTTTEEEEEE.. CS
         DAO 174 eedgkvwgverttpgendaada..vVnaaGawsd...llgll.kel.dlpispvrgqvlvlkplseklvspaailpvpe.....tdddgrgvyvtpr.. 258
                 e dg++++v + ++g+   ad   +V a G  sd   +   l +e  d    pvr   ++++ ++e+    + i+p+++      +  +  v ++ +  
  CCE29762.1 146 EADGRLVRV-NFSDGSS--ADGslLVGADGSNSDtrkF---LvPEAhDNHALPVRLVGVAVEMTPEQVKPLRDIDPLLFqgchpVTGHFLWVSMMETpe 238
                 445677777.3333543..3445588888888876542...2233344455777777777755545333334566666555432222222222222221 PP

                 TTSEEEEEESSE...............EETTCSSTSCSHHHHHHHHHHHHHHSGGG CS
         DAO 259 kdgrvlvGgtad...............eesgdddpevdeedidellealrklfPql 299
                  +g ++ G   +               +  +d++p+v++++i+e+ +++ ++ P l
  CCE29762.1 239 VNG-TK-G---TaeeryqvqiivswmfKGPQDEVPAVPAARIAEMKRRAGDFHPLL 289
                 111.22.2...133567777777775544455558888888888888887777765 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.6e-05     0.047       1      44 [.       8      50 ..       8      59 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.6e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrlt 44
                i+i GaG +G +la+ L+ka+ +  ++ r+++++a + +G  +t
  CCE29762.1  8 ILICGAGVVGLTLAHGLKKANIPFQIYERDEHIDA-RGHGWAIT 50
                89****************************99985.55555555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.34       1      31 [.       8      38 ..       8      46 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkde 31
                i+i+G+G vG +la+ L+++++++ + ++de
  CCE29762.1  8 ILICGAGVVGLTLAHGLKKANIPFQIYERDE 38
                79*****************887788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3069.55
//
Query:       CCE29763.1  [L=992]
Description: related to CFT2-cleavage and polyadenylation specificity factor, part of CF II [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-64  216.2   0.0    4.1e-64  215.6   0.0    1.3  1  Lactamase_B_6  Metallo-beta-lactamase superfamily domain
    9.5e-55  185.4   1.8    1.4e-54  184.8   0.0    2.1  2  CPSF100_C      Cleavage and polyadenylation factor 2 C-termin
      3e-15   56.5   0.0      1e-14   54.7   0.0    2.0  1  Beta-Casp      Beta-Casp domain
    4.8e-14   52.0   0.0      1e-13   51.0   0.0    1.6  1  RMMBL          Zn-dependent metallo-hydrolase RNA specificity


Domain annotation for each model (and alignments):
>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.6   0.0   9.3e-68   4.1e-64       1     193 []      20     242 ..      20     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 215.6 bits;  conditional E-value: 9.3e-68
  Lactamase_B_6   1 lLeld.nvkiLlDvGwdeskvslesalkelekviptvdliLLshatlehlGayallyakfksklllnipvyatlpvvkLGrvslldlyaskgllgp 95 
                    lLeld +vkiL+D Gwde++ ++  +l+elek +pt++liLL+hat++hl+ay++++++++  l+++ip+yat pv+ LGr +++dly s+ +  +
     CCE29763.1  20 LLELDgGVKILVDLGWDETF-DV-GKLEELEKQVPTLSLILLTHATVSHLAAYVHCCKHVP--LFTRIPAYATRPVIDLGRSLTQDLYSSTPAAST 111
                    79***88***********84.44.79********************************985..99***********************99887764 PP

  Lactamase_B_6  96 e.dseel.......................eledideafdkiktlkYsQkl.elkskl....dgltitaynaGhtlGGtiWkiskesekivYavdw 162
                       +++l                       + ++i+++f+ i++lkYsQ++ +l+s++    +gltitayn+GhtlGGtiW+i++++e+ivYavdw
     CCE29763.1 112 AiRQSSLseiayaytqtaaaaaqnlllqspTPDEIARYFTLIQPLKYSQPHqPLPSPFspplNGLTITAYNSGHTLGGTIWHIQHGLESIVYAVDW 207
                    42444445668888888888888777666666*****************6548999888888********************************** PP

  Lactamase_B_6 163 nhakeshLngaalldssg....kvleqllrptali 193
                    n+a+e++ +gaa+l+++g    +v+eql++ptali
     CCE29763.1 208 NQARENVFAGAAWLGGAGgggaEVIEQLRKPTALI 242
                    **************98877899***********98 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3       0.7   3.1e+03      45      63 ..     536     554 ..     502     576 .. 0.50
   2 !  184.8   0.0   3.2e-58   1.4e-54       1     170 []     807     986 ..     807     986 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.7
   CPSF100_C  45 eeeeeeeeeeeeeaskkqk 63 
                 ++e+++e+e+e+ +++ + 
  CCE29763.1 536 SSESSSESEDEDGQQQGKA 554
                 2222222222222222222 PP

  == domain 2  score: 184.8 bits;  conditional E-value: 3.2e-58
   CPSF100_C   1 VkLsdsLvksLkwqkveglevatvtgeleieeeaeeaeeeekeeeeeeeeeeeeeeeaskkqkl....aeksekeaseeeseekkeslptldvlpanka 95 
                 VkL+dsLvk+Lkwq+v+gl+++t++g+l  +++ +++++ e  ++  ++e+++++ ++sk+qk+    a+++  +++ +++++k++ lp+ldv+p+n++
  CCE29763.1 807 VKLADSLVKKLKWQNVRGLSIVTISGQLL-ATSLNDNARGEIPAAADADEADDNDATPSKRQKMdaaaAAAALPSTALTHTASKDTILPVLDVMPSNLV 904
                 8***************************9.555566666677777777777788888999999998888888899999999999999************ PP

   CPSF100_C  96 s.vrsaaqplfvGdlrLadLkkallssgikAEFrgeGtLvidgaVaVrKsakGrieiegvvle......tfyeVrkaiYegl 170
                 s +r++aqpl+vGdlrLadL++a++ sg+ AEFrgeG+Lvidg+V+VrK+a+Grie+e+v+l+      t y+V+kaiYe+l
  CCE29763.1 905 SaARTTAQPLHVGDLRLADLRRAMQGSGHGAEFRGEGILVIDGSVSVRKTAEGRIEVESVGLPalgkrnTLYQVKKAIYENL 986
                 ********************************************************************************87 PP

>> Beta-Casp  Beta-Casp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   2.3e-18     1e-14       1     101 [.     288     438 ..     288     444 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 2.3e-18
                 HHHHHHHH..HCTT..TT.....S-S.-EEEEE-HHHHHHHHHGGGGGGE-SHH.....HHH..H...HH............................. CS
   Beta-Casp   1 aqellylLeelwkekkle.....dlk.lpiyldsplaskatevYkeyaeveaks.lewmesk..ke.eln............................. 60 
                 ++el y+Le++w++++       +l+ +++yl+++ +s++++         a+s lewm+++  +e e +                             
  CCE29763.1 288 VLELSYFLEHAWRADAAPganenTLRsTKLYLAGRNMSSTMRN--------ARSmLEWMDDNivQEfE-Acaegqrkangamekkeagpfdfkflrile 377
                 68***********988335999944459***************........9**********976554.258999************************ PP

                 ....................HS-SSEEEEES-TTSSSSHHHHHHHHHTTSTTSEEEESS-- CS
   Beta-Casp  61 ....................sskgpkvilassgmlegGrsrellkklledprntvilvgyq 101
                                      s+g  vilas+++le+G+s+++lk l++ p+n+vil+++ 
  CCE29763.1 378 rkaqiaklvnqaspavgdgaPSSGGRVILASDTSLEWGFSKDVLKGLAQGPNNLVILTDRP 438
                 ****************999977899*********************************986 PP

>> RMMBL  Zn-dependent metallo-hydrolase RNA specificity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   2.3e-17     1e-13       1      62 []     722     790 ..     722     790 .. 0.90

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 2.3e-17
       RMMBL   1 tipvkarieeidfSgHadknellelirklkprnvilvHGeeeatsalarllk.......eeegidvfiP 62 
                 ti +++ri ++dfSg +d+++l +li++++pr++ilv G + +t +la++++        +++idvf+P
  CCE29763.1 722 TIQANLRIGFVDFSGLHDRRSLDMLIPLIQPRKLILVGGNQAETMSLAEDCRaalgtdgNDRAIDVFTP 790
                 68899**********************************************855555555555999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (992 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 6720.29
//
Query:       CCE29764.1  [L=222]
Description: related to multi copy suppressor SYS1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-49  166.9   5.3    3.3e-49  166.7   5.3    1.0  1  SYS1      Integral membrane protein S linking to the trans Go


Domain annotation for each model (and alignments):
>> SYS1  Integral membrane protein S linking to the trans Golgi network
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7   5.3   1.9e-53   3.3e-49       3     144 .]      13     155 ..      11     155 .. 0.98

  Alignments for each domain:
  == domain 1  score: 166.7 bits;  conditional E-value: 1.9e-53
        SYS1   3 aaeldPlkilsqivllqlayYliaavlilltallagkelsldllfswesldvddtsgrllilvwvln.slvvvlallllveRsKlalDFalTihvihlv 100
                  +e++Plki++qi +lq++yYl+a++l+l+tal++g ++sl++l+ w+ +++d+t g+ll++vw+l+ +l++++a+++lv+RsKl+ DFalTih +hlv
  CCE29764.1  13 LTEIQPLKIATQIAILQALYYLTAGMLMLFTALVTGMSFSLNMLLGWDGVRGDTTRGWLLSFVWLLDgGLFMSVAIVILVARSKLVPDFALTIHGLHLV 111
                 6889***************************************************************99****************************** PP

        SYS1 101 vvslytralPaslaWwllqvlsaaimivlgeylcrrrelkeiil 144
                 +++lyt+alP++ +Ww++++ s+a+ i lg++ c++rel+++++
  CCE29764.1 112 FTTLYTHALPSNSMWWMTMAGSSAVSIALGMWGCQYRELQPVFF 155
                 *****************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1853.05
//
Query:       CCE29765.1  [L=138]
Description: uncharacterized protein CPUR_03612 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-20   71.5   4.1    6.6e-20   71.1   4.1    1.2  1  COX6B     Cytochrome oxidase c subunit VIb


Domain annotation for each model (and alignments):
>> COX6B  Cytochrome oxidase c subunit VIb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   4.1   3.7e-24   6.6e-20       3      75 ..      24      96 ..      22      97 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 3.7e-24
       COX6B  3 aPnknqrkaCwearddyfkCldkkgeekaekkeeqdekkCkaekkeyesnCaksWveyfkekrvlekreerll 75
                 P++++r  Cw++rd+y+ Cld++++ +a+k+ +  +++C +e + +e +Ca++Wv+yfk++rv + +++r l
  CCE29765.1 24 IPTRQERSVCWASRDAYYTCLDANNIVDANKDPSATKRACPRETDAFERDCAAAWVKYFKQWRVADIQKKRRL 96
                69******************************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1071.76
//
Query:       CCE29766.1  [L=967]
Description: related to phosphatidylinositol-4-phosphate 5-kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-102  341.8   0.1   5.7e-102  340.6   0.1    1.7  1  PIP5K     Phosphatidylinositol-4-phosphate 5-Kinase


Domain annotation for each model (and alignments):
>> PIP5K  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.6   0.1  3.2e-106  5.7e-102       2     273 ..     445     762 ..     444     763 .. 0.97

  Alignments for each domain:
  == domain 1  score: 340.6 bits;  conditional E-value: 3.2e-106
                 SS-EEEE----SSS--EEEETTSSEEEEEE-HHHHHHHHHHHHHHHHHHTT-TT--S--EEEEEEEE.ETTEEEEEEEEE-SS-TTS--SEEEEE-S-- CS
       PIP5K   2 ksalkelsseGkSgsffylteDkkfiiKtitksevkflrkllpeYyehvkenpnsLltrfyglhrvklkggkkvrfvVmenlfptdkeiheryDLKGst 100
                 k++l+el+s+GkSgsffy+++D+k+iiKti++se+kflrk+l++Yy+hv++npn+Ll++fyglhrvk+++gkk++fv+m+nlfp++++ih ++DLKGst
  CCE29766.1 445 KYILSELGSPGKSGSFFYFSRDYKYIIKTIHHSEHKFLRKVLRDYYNHVQSNPNTLLSQFYGLHRVKMPYGKKIHFVIMNNLFPPHRDIHTTFDLKGST 543
                 689************************************************************************************************ PP

                 TT-S--HHHH.TSSS-EEEHHHHHHHST.EEE-HHHHHHHHHHHHHHHHHHHHTTB-S-EEEEEEEB---------------------------..... CS
       PIP5K 101 vgReakkkee.ekkektlkDlDliekkeklklgkekreelleqlekDvefLeslnimDYSLLlGihnsekeekeekkesessssekesekseee..... 193
                 +gR +k+++  ++ + tlkDl++ +++++l+lg +k++ +leql+kDv +L++l+imDYSLL+Gih+ ++ ++e+ ++++ + +++  e+s+++     
  CCE29766.1 544 IGRDYKEEDLdKNPRATLKDLNWLRRHQHLELGIQKKRMFLEQLRKDVVLLKRLQIMDYSLLIGIHDLSRGNEENLRDKTLQIFNPGGESSSADeppsv 642
                 ******77763556678*******************************************************************99999988889**** PP

                 ........................................-----------------SEEEEESSSSEEEEEEEEE----B------------------ CS
       PIP5K 194 ........................................aseeeeeseeeedeegekakeensedgkevyylgiIDiLqkynlkKklehalkslkkdk 252
                                                         +++++    +++d++g +a++e++++ +evyylg+ID+L++y++ Kk+eh++k+l+ d+
  CCE29766.1 643 llrtpskmenvrkirelrekirqerpvpigqadkmpselgETHSRPGFVFNQDDGGFQATHEDNSPAEEVYYLGVIDCLTHYGVIKKIEHFWKGLSSDR 741
                 ***************************************9999******************************************************** PP

                 ----TTHHHHHHHHHHHHHHH CS
       PIP5K 253 ksisavpPkeYaeRFlkfiek 273
                 ++isa+pP++Y +RF++f+e 
  CCE29766.1 742 SQISALPPEQYGDRFYNFVEG 762
                 ******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (967 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 6702.17
//
Query:       CCE29767.1  [L=218]
Description: uncharacterized protein CPUR_03614 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1791.91
//
Query:       CCE29768.1  [L=428]
Description: probable glutaryl-CoA dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-24   85.5   0.2    5.7e-24   85.0   0.2    1.2  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    7.3e-23   81.4   0.2    1.8e-22   80.1   0.1    1.8  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    1.5e-16   60.4   0.0    4.1e-16   59.0   0.0    1.7  2  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    2.9e-06   27.6   0.3    6.5e-06   26.5   0.3    1.6  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.2   1.3e-27   5.7e-24       2     149 ..     273     421 ..     272     422 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 1.3e-27
                    BHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC.-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH CS
  Acyl-CoA_dh_1   2 kGfrvametlnheRlavaaaalglarraleealeyarrrkafg.kplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfas 96 
                    +G+r  ++ ln+ R +++++ +g+++ +l +a+ ya +rk+f+  p++ +ql+++kla+ a+ +    l++ ++ ++ d+gk ++  + m+K   +
     CCE29768.1 273 EGLRGPLSCLNNARYGICMGVMGALEDCLARARTYALERKQFKgNPIGRYQLIQKKLADAATAASYGTLAAIQVGRLKDEGKANPLMICMVKRHNC 368
                    58899999**********************************989*************************************************** PP

                    HHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH CS
  Acyl-CoA_dh_1  97 elaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrl 149
                    +la + a+l  +++Gg+++++ey++ r++ +  v + +eG s+i+ +i+++++
     CCE29768.1 369 DLALQNARLLQEIFGGNAVSDEYHIGRHVANLFVAQTYEGQSDIHSLILGEGI 421
                    ************************************************99876 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.7   7.8e+03       6      38 ..       1      39 [.       1      47 [. 0.52
   2 !   80.1   0.1   4.1e-26   1.8e-22       1     112 [.      48     158 ..      48     159 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.7
                   HHHHHHHHHHHHHTH...HHHHHHH..HHT.SGHHHHHH CS
  Acyl-CoA_dh_N  6 alrdtvrefaeeela...phaaewd..eeg.efprelwk 38
                   ++r t+r+ a+ +++   p+aa+ +  +++  +p e+++
     CCE29768.1  1 MFRLTLRSIARSNAPswrPVAARSYasARApSIPFEWQD 39
                   688888888888664111444444433333345555555 PP

  == domain 2  score: 80.1 bits;  conditional E-value: 4.1e-26
                    THHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHH CS
  Acyl-CoA_dh_N   1 teeqealrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrf 96 
                    te++ a+ +t+ ++++e+l p++ +++++++f+ +++++++elGllg ++   yg+ g++ ++ a+++  ++r+d+g++++l+v+s+lv+  i +f
     CCE29768.1  48 TEDELAVAETAERYCQERLMPRVLQAYRDEHFDPKILEEMGELGLLGANI-HGYGCPGVSGVAGALICRAVERVDSGYRSGLSVQSTLVMGGINTF 142
                    79999*********************************************.7******************************************** PP

                    S-HHHHHHHHHHHHTT CS
  Acyl-CoA_dh_N  97 GteeqkrryLpklasg 112
                    G+eeqk+r Lp++a+g
     CCE29768.1 143 GSEEQKERLLPQMAQG 158
                    **************99 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0     9e-20   4.1e-16       1      97 []     163     261 ..     163     261 .. 0.87
   2 ?   -2.3   0.0       1.2   5.5e+03      36      70 ..     329     367 ..     326     376 .. 0.59

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 9e-20
                    EEE---SS-SS-GGG---EEEEETT.E..EEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE...GG..GEEE-----BSS-TTS-EEE CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvkttaaerdgge..yvlnGeKiwitnaaiatlalvlartekpdrarglslflvp.rdap..gvsvrrieeklGlrglptge 91 
                    af+lTEp++Gsd  s+++ a+++ +++  y l+G+K+witn++ia++++v+a+   ++ +++++ flv+ +d p   +s   i++k+Glr   tg 
     CCE29768.1 163 AFGLTEPNHGSDPGSMESVAKPHPTKKgyYSLSGAKTWITNSPIADVLVVWAK--LQE-TGKIRGFLVErKDCPpgTLSTPAIHDKTGLRASITGM 255
                    79****************99555554445************************..556.789*******64555888999**************** PP

                    EEEE.. CS
  Acyl-CoA_dh_M  92 lvfedv 97 
                    ++++++
     CCE29768.1 256 IQMDEC 261
                    *99976 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
                    EEETTTT-SEEEEEEE...TS---.----EEEEEEE..G CS
  Acyl-CoA_dh_M  36 witnaaiatlalvlar...tekpd.rarglslflvprda 70 
                        a+ a++ ++ a      k++ +a+ l +++v+r++
     CCE29768.1 329 LADAATAASYGTLAAIqvgRLKDEgKANPLMICMVKRHN 367
                    555555566666555566533444567888888888665 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.3   1.4e-09   6.5e-06       2     131 ..     288     408 ..     287     411 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.4e-09
                    HHHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   2 giaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaa 97 
                    gi++ + Ga++ +la +  +a er++  +g+++   + +q +la+aa++     +   ++ +      ++gk++     + + + + +  +la + 
     CCE29768.1 288 GICMGVMGALEDCLARARTYALERKQ-FKGNPIGRYQLIQKKLADAATAASYGTLAAIQVGRL----KDEGKAN----PLMICMVKRHNCDLALQN 374
                    689999********************.*******************98665555555555444....8888887....788889999999****** PP

                    HHHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSGG CS
  Acyl-CoA_dh_2  98 vdalfeaaGgsalrkesplqRlwRDahaaaaHaa 131
                    ++ l e++Gg+a+ +e+++ R+  ++ +a+++++
     CCE29768.1 375 ARLLQEIFGGNAVSDEYHIGRHVANLFVAQTYEG 408
                    ******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2969.95
//
Query:       CCE29769.1  [L=147]
Description: probable ubiquitin conjugating enzyme ubc1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-52  176.3   0.0    2.8e-52  176.1   0.0    1.0  1  UQ_con     Ubiquitin-conjugating enzyme
     0.0047   16.6   0.0     0.0058   16.3   0.0    1.2  1  Prok-E2_B  Prokaryotic E2 family B
  ------ inclusion threshold ------
      0.036   14.3   0.0      0.045   14.0   0.0    1.3  1  RWD        RWD domain
      0.045   13.6   0.0      0.072   13.0   0.0    1.3  1  UEV        UEV domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.1   0.0   6.2e-56   2.8e-52       1     139 [.       5     141 ..       5     142 .. 0.98

  Alignments for each domain:
  == domain 1  score: 176.1 bits;  conditional E-value: 6.2e-56
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltles 99 
                 r++kel++l +++ps++sa++v + +lf+w+++i+gp d+pY ggvF l ++fp+dYP+kpPkv+f+t+i+HPn++++G++cldiL+++ Wspalt+++
  CCE29769.1   5 RINKELTDLGRDPPSSCSAGPVGE-DLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ-WSPALTISK 101
                 799********************7.**************************************************************77.********* PP

                 HHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con 100 vllsiqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                 vllsi+s+l++pnp++pl  e+a+ +k+dr +y+++++e+
  CCE29769.1 102 VLLSICSMLTDPNPDDPLVPEIAHVYKTDRPRYEATAREW 141
                 ************************************9986 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-06    0.0058      34     109 ..      46     115 ..      26     134 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.3e-06
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLn.egi 109
                 sgg++ l++ +p ++p+ pp+v  + +      p in+ +g +Cl       d+w p+ ++ +vl ++  +L+  ++
  CCE29769.1  46 SGGVFFLAIHFPTDYPFKPPKVNFTTRI---YHPNINS-NGSICL---DILRDQWSPALTISKVLLSICSMLTdPNP 115
                 89**********************9999...6799999.9*****...9999************9888888874555 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     1e-05     0.045      55     109 ..      50     107 ..      16     113 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1e-05
                 EEEEEEE-SSTTSS--EEEEEECC...SS-HHHHHHHHHHHHHHHHHT.TTS--CHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
         RWD  55 lkleiklpeeYPeeaPiislsste...nlpkeqvksleekleelaeen.lgepvifali 109
                 + l i++p +YP ++P++++++     n+ ++  + + + l+++++       v+ +++
  CCE29769.1  50 FFLAIHFPTDYPFKPPKVNFTTRIyhpNI-NSNGSICLDILRDQWSPAlTISKVLLSIC 107
                 5689***************9998833322.23333356666666665544555555555 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.6e-05     0.072      53     117 ..      53     112 ..      45     119 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
                 EEE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHH.S--TTT--HHHHHHHHHH---- CS
         UEV  53 liwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLe.eWkreksnlvslvqelaqafee 117
                  i  + +yP+++P v  + +       + n++++G + l++L+ +W++ + ++++++ +++++ ++
  CCE29769.1  53 AIHFPTDYPFKPPKVNFTTRI-----YHPNINSNGSICLDILRdQWSP-ALTISKVLLSICSMLTD 112
                 6788999*****987554433.....3559************835776.66666665555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 1088.96
//
Query:       CCE29770.1  [L=574]
Description: related to NADPH oxidase 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-31  107.6   0.0      1e-30  106.9   0.0    1.3  1  NAD_binding_6  Ferric reductase NAD binding domain
    9.9e-19   67.4   0.0    2.6e-18   66.1   0.0    1.8  1  FAD_binding_8  FAD-binding domain
    1.6e-18   67.0  20.8      6e-18   65.2  12.9    2.4  2  Ferric_reduct  Ferric reductase like transmembrane component
  ------ inclusion threshold ------
        0.1   13.3   0.0        0.4   11.4   0.0    2.1  1  NAD_binding_1  Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.0   2.3e-34     1e-30       1     155 [.     420     567 ..     420     568 .. 0.92

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 2.3e-34
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkksk..kealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyeaedasdqlissiege 94 
                    ye+ +lv++GiG+tpf+silk ++++++  +++++  k+++ w++r+ +s+ewf+ +L  +e ++ + +ieih+YlT + +a+das+ +i+     
     CCE29770.1 420 YETSVLVGAGIGVTPFASILKSIWYRMNypQRTCRLSKVYFFWICRDFESFEWFRSLLLAVEAQDISHRIEIHTYLTAKITADDASNIMIND---A 512
                    56779*********************99999******************************************************9966655...4 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  95 nseslkqgvdavsgtrnvkihfgRPnlkevlkdiaskhknssvgvfvCGppklvkevkklv 155
                    n+e    + d ++g+r   + fgRPn++ +++ i + h  ++ gvf CGp+ l   +  ++
     CCE29770.1 513 NAE----K-DTITGLR-SPTSFGRPNWDLIFRGIRKLHYPGEAGVFFCGPKPLGSALHVCC 567
                    444....3.6788999.999**************999**************9998887777 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   5.8e-22   2.6e-18       4     108 ..     291     413 ..     288     414 .. 0.93

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 5.8e-22
  FAD_binding_8   4 vskakvalleedliklkvskpkkslkykaGqyvyinipslsklfwqsHPFtiasapeddklslvikvksgltkklakkllsssk............ 87 
                     s++kv   ++ + +++++k k     +aGqy+   +p++s  +wq HPFt++sape+d++s++i+ ++++t  +a+ l    +            
     CCE29770.1 291 TSILKVIQHPSRVCEIQIRKEKT-KVRAAGQYILFCCPAVS--LWQYHPFTLTSAPEEDYISIHIRCQGDFTMAVARALGCDWDrkgdivddtski 383
                    5778999999************8.77789************..8*********************************998776689********** PP

  FAD_binding_8  88 .........kelenkkaklkvlidGPYGap 108
                              ++  +   ++v +dGP+G++
     CCE29770.1 384 vgvdkgtngVHPALQRVLPRVYVDGPFGSA 413
                    *******999999999999*********87 PP

>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   1.8    0.0025        11      42      87 ..      64     109 ..      42     124 .. 0.76
   2 !   65.2  12.9   1.3e-21     6e-18       4     123 ..     115     236 ..     112     237 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0025
  Ferric_reduct  42 vlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlal 87 
                    v++f++allH++++++  +++s +d+ +   + + +++      al
     CCE29770.1  64 VFVFVFALLHALIFVFASIHYSLKDSLQGARDVFGFSFTVSRAAAL 109
                    679*****************99886666666666665555555555 PP

  == domain 2  score: 65.2 bits;  conditional E-value: 1.3e-21
  Ferric_reduct   4 aalillplallla..lRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynl....lGvlalllliil 93 
                    +alil+p+   l   +R+++l+    +++dk+++fH  +++ +++++++Hvi++  nf r  a+ ++  ++ +l  ++      +G ++l++l+ +
     CCE29770.1 115 VALILFPVCRTLVslARQTPLN--GIIQFDKHITFHITTAWSMVFFSWVHVIAHWTNFARLAAK-NNLGFYGWLLANFASgpgwTGYVMLIALMGI 207
                    5788888777755578998887..6678*******************************98775.4444444444444444666************ PP

  Ferric_reduct  94 aitSlkfirrrlsyelFyylHhllyvayll 123
                    ++tS++  r r +ye F+y+Hhl++v++l+
     CCE29770.1 208 VVTSIEKPR-RANYERFWYTHHLFVVFFLF 236
                    *********.*****************986 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.8e-05       0.4       1      81 [.     425     513 ..     425     564 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.8e-05
                    EEEEGGGGHHHHHHHHHHHHHCT......TCSEEEEEEEESSGCGS.TTHHHHHHHHHHCTT.EEEEEEEESSCTTTSSSEESSHHHHH CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeak......dktkvvlvyGnrteedl.lyreeleelakklpg.rlkvvavvsreeagweggkgrvqdal 81 
                    ++++G G++P+ s+l+ i  + +      +  kv++++ +r  e++  +r  l +++++  + r+++ ++++ +   ++ ++  ++da 
     CCE29770.1 425 LVGAGIGVTPFASILKSIWYRMNypqrtcRLSKVYFFWICRDFESFeWFRSLLLAVEAQDIShRIEIHTYLTAKITADDASNIMINDAN 513
                    79***************998855677777667888888888888662345555555544444566665555555555555666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4150.68
//
Query:       CCE29771.1  [L=489]
Description: uncharacterized protein CPUR_03618 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0067   16.4   0.2      0.014   15.3   0.2    1.4  1  DUF4514   Domain of unknown function (DUF4514)
     0.0079   16.4   2.8       0.08   13.1   0.1    2.5  2  CwsA      Cell wall synthesis protein CwsA
  ------ inclusion threshold ------
      0.028   13.8   0.3        0.1   12.0   0.3    2.0  1  SKG6      Transmembrane alpha-helix domain
          3    8.1   5.7        6.9    6.9   4.9    2.0  1  CD99L2    CD99 antigen like protein 2


Domain annotation for each model (and alignments):
>> DUF4514  Domain of unknown function (DUF4514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   3.2e-06     0.014      24      48 ..     281     305 ..     273     311 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.2e-06
     DUF4514  24 iiGtalGvaisAgFLALKiClirkh 48 
                  iG+++Gva  A+  AL +C+ir+h
  CCE29771.1 281 GIGAGVGVAALAAIGALAFCFIRRH 305
                 59**********************9 PP

>> CwsA  Cell wall synthesis protein CwsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3     0.027   1.2e+02      58     110 ..     145     194 ..      92     208 .. 0.62
   2 !   13.1   0.1   1.8e-05      0.08      94     127 ..     284     321 ..     277     324 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.027
        CwsA  58 eaiaqelaaaqevvaglPqaledarkkrrrkrplllagvavavlaGGavafsi 110
                 +  aq  a a  v a lP       +   ++r l+   v+v+v +GG  +  +
  CCE29771.1 145 DEPAQVEAQATPVPAVLPPRA---DHAGLQRRALITNFVTVTVGSGGGDSTVL 194
                 444444444444444444433...33444556677777999999998755444 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.8e-05
        CwsA  94 agvavavlaG.GavafsivrrssrPePss...lpPsvd 127
                 agv+va la  Ga af+ +rr ++P+P++   l Ps +
  CCE29771.1 284 AGVGVAALAAiGALAFCFIRRHRNPKPDPddlLGPSSE 321
                 89999988655***********9998876222456655 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   2.3e-05       0.1       3      36 ..     271     304 ..     270     306 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
        SKG6   3 dssnsntvaIavaVaVPVaViiivLlailifvrR 36 
                 ds++s+++  +++ +V+Va+ +++ +  ++f+rR
  CCE29771.1 271 DSGLSTGAKAGIGAGVGVAALAAIGALAFCFIRR 304
                 789999999***************9999999*99 PP

>> CD99L2  CD99 antigen like protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.9    0.0015       6.9      95     132 ..     258     295 ..     241     301 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0015
      CD99L2  95 gggrsgsnddkgsdetaetgtiAgivsavamAlvGAvs 132
                 ++g++g+++d+++d+  +tg+ Agi + v++A + A+ 
  CCE29771.1 258 SSGNNGNKNDGNNDSGLSTGAKAGIGAGVGVAALAAIG 295
                 45677888899*******************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3615.53
//
Query:       CCE29772.1  [L=490]
Description: uncharacterized protein CPUR_03619 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-37  128.0  29.1    2.3e-36  125.5  30.0    1.6  2  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.015   13.7   2.5        4.3    5.5   0.1    3.3  3  OATP             Organic Anion Transporter Polypeptide (OATP)
      0.017   14.8   0.2      0.017   14.8   0.2    2.4  3  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l
        5.7    6.6   6.9         17    5.1   0.1    3.7  3  DUF3149          Protein of unknown function (DUF3149)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5  30.0   5.1e-40   2.3e-36       4     352 ..      51     415 ..      47     416 .. 0.87
   2 ?   -1.3   0.0      0.18   7.9e+02     156     184 ..     437     465 ..     427     478 .. 0.63

  Alignments for each domain:
  == domain 1  score: 125.5 bits;  conditional E-value: 5.1e-40
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgaga 101
                 ++++s+++r ++g a   +l +dl ++ps+++l+l+++++ ++++ +p   +  rf +rr++ +  ++++l ++l+ +  +++  ll++rvl G+ +++
  CCE29772.1  51 IYLFSFIDRVNVGNARLYHLERDLSLTPSQFQLILSVFFIPYMLFEVPSNLVLKRFTPRRWIAFITFSWGLVATLMGL-VGSFgSLLACRVLLGALEAG 148
                 56666677776666666699************************************9999777777777777577776.55566*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee...... 188
                 lfp+  ++++  ++++e ++ +g+l ++++++ +lg ll+  +  + g      Wr++f+i +i s++++v++++ lp ++ + +   +ke+       
  CCE29772.1 149 LFPGLTVYLTFFYTRNELALRVGYLFVSAAVAGALGGLLAYGIGGLDGragmsgWRWIFIIEGIPSVVLGVVAYFMLPNDAASAGFLDEKERVlmeerr 247
                 *****************************************9996666999999******************999999999999999998888999955 PP

       MFS_1 189 .......kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrrlll 279
                        +g ++   +++w+a+   +  w + +a +++ ++++g++t+lp+++q    +s + ++++     +++vga+  + +++lsdrl+   r l+
  CCE29772.1 248 rrgygctEGGEEVRRRDVWRAVTDYK-AWGFYVAQFGVDTMLYGFSTFLPTIIQALGRWSpAQVQLL--TIPCYFVGAATYMATAWLSDRLQM--RGLF 341
                 55555554444444444777777777.68899999999999999********999999**5445555..9999999999999********998..**** PP

       MFS_1 280 allllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlapp.eeagtasglfntagslggalg 352
                  +l+++++++g+ +l +  s+ +++++++l+  gl +v+++ la++ ++ p+  ++ t +gl  t+g+++g+++
  CCE29772.1 342 CVLFGSVSVIGYGVLLADASPGVHYFACFLVAGGLYVVVGLPLAWLPNNSPRyGKRTTSTGLQLTFGNAAGVMS 415
                 *********************************999999999999999998889999***********999876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.18
       MFS_1 156 ilaivsllafvlfllllpeepperkrksp 184
                 +++  +++ + l++++ +e+ ++ +   +
  CCE29772.1 437 MVGMGTAIYGFLWYWYRRENGKRDQGIVH 465
                 33444555555666666666666655555 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1   0.00097       4.3      22      85 ..      65     128 ..      47     134 .. 0.89
   2 ?    5.3   0.0    0.0011         5     308     380 ..     286     353 ..     213     360 .. 0.84
   3 ?    0.9   0.0     0.024   1.1e+02     216     248 ..     367     399 ..     364     414 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00097
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  22 stittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslllal 85 
                   + ++E+  +l+ s+  li+s++ i ++l+ +    + +r    rwi++ ++  +l + l+ l
  CCE29772.1  65 ARLYHLERDLSLTPSQFQLILSVFFIPYMLFEVPSNLVLKRFTPRRWIAFITFSWGLVATLMGL 128
                 567789***********************************9999***********99999865 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0011
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 308 llvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsllsllll 380
                 +++ Gf+tFlp  ++   + s+++ +llt + + +++a+  ++  +l  +l+++   ++ +  v+    ++++
  CCE29772.1 286 TMLYGFSTFLPTIIQALGRWSPAQVQLLT-IPCYFVGAATYMATAWLSDRLQMRGLFCVLFGSVS----VIGY 353
                 6788************************7.4466667778999**********987666555444....4443 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.024
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 216 WlgflilgvllllaaiplffFPkelpkkkeera 248
                 +  fl++g l++++ +pl+++P + p+  ++ +
  CCE29772.1 367 FACFLVAGGLYVVVGLPLAWLPNNSPRYGKRTT 399
                 6679********************997766654 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.9   8.7e+03      17      26 ..     124     133 ..     118     146 .. 0.53
   2 ?   -3.9   0.6       2.7   1.2e+04      35      48 ..     170     183 ..     169     187 .. 0.71
   3 ?   14.8   0.2   3.8e-06     0.017      35      69 ..     435     469 ..     430     477 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.9
  Phage_holin_2_4  17 tggGavvsfa 26 
                      t  G v+sf 
       CCE29772.1 124 TLMGLVGSFG 133
                      4444444443 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.7
  Phage_holin_2_4  35 ialvGlavAliGlL 48 
                      ++++ +  A++G+L
       CCE29772.1 170 VGYLFVSAAVAGAL 183
                      56666777777776 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 3.8e-06
  Phage_holin_2_4  35 ialvGlavAliGlLvnWyYkreanRRaaaehelre 69 
                      +a+vG+  A+ G+L  Wy + +  R + + he ++
       CCE29772.1 435 LAMVGMGTAIYGFLWYWYRRENGKRDQGIVHEEHR 469
                      699***********988655555555555555444 PP

>> DUF3149  Protein of unknown function (DUF3149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.6      0.27   1.2e+03      20      28 ..     216     224 ..     214     225 .. 0.87
   2 ?    5.1   0.1    0.0037        17       3      15 ..     404     417 ..     403     418 .. 0.87
   3 ?    3.0   0.1     0.017        76      16      33 ..     433     450 ..     432     456 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.27
     DUF3149  20 tigmgaffi 28 
                 ++g++a+f+
  CCE29772.1 216 VLGVVAYFM 224
                 89*****97 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0037
     DUF3149   3 dL.FssdvGLlSli 15 
                 +L F++  G++S +
  CCE29772.1 404 QLtFGNAAGVMSAF 417
                 799*********76 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.017
     DUF3149  16 VIvftigmgaffiryFir 33 
                 V ++++gmg  ++++ ++
  CCE29772.1 433 VSLAMVGMGTAIYGFLWY 450
                 8899********999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3698.20
//
Query:       CCE29773.1  [L=136]
Description: uncharacterized protein CPUR_03620 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.051   14.0   0.2      0.091   13.2   0.2    1.5  1  DUF3357   Domain of unknown function (DUF3357)


Domain annotation for each model (and alignments):
>> DUF3357  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   5.1e-06     0.091      35      90 ..       8      57 ..       1      81 [. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.1e-06
     DUF3357 35 vlvvlvalagvrlagqaslvapgevavsetaesvsaaveetaSRGveaGVSeKssg 90
                +l +l+alag+ la++  +++  e   ++ + s++a ++e+ S Gv+ GVS  s  
  CCE29773.1  8 LLTILLALAGQVLAQD-TTPT--E---ASSTFSIDATTTEANSIGVSTGVSSTSAL 57
                5667778888777766.3333..3...2334566778889***********87765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1085.16
//
Query:       CCE29774.1  [L=443]
Description: related to n-alkane-inducible cytochrome P450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-39  134.9   0.0    4.1e-39  134.6   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.0   2.3e-43   4.1e-39      21     453 ..       4     427 ..       2     436 .. 0.85

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 2.3e-43
                 CHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHHHH CS
        p450  21 elhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleelve 119
                 ++++++ + + ++g +f+ +    ++v  ++ e +++vl  + e+ s+   +++ +++  +f+g gv++++g+ wk+ R++l p +     ls  ++++
  CCE29774.1   4 HFNQFYAEQFSQHGRTFMHRTPLGQTVSTIEVENFRAVLALNFEDYSK---KPVRSKAVLRFLGLGVFTKDGSSWKQSRDLLRPLFKRA-ELSDIDRFK 98 
                 6788999999999999999999999999999********999555555...5556666669**************************88.7899***** PP

                 HHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH..HHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHH CS
        p450 120 eeaedlveklrkkagesselditellskaaldvigsilFgarfdlledek..lselvkaveelssllskssvqllllfpllkylptkllrklkeavkkl 216
                 + ++++++ + ++  +   +++++ll k +ld+ ++ +Fg++f++l++++   +el++a  + +   sk+++  ++l    + + t+++  +++++ ++
  CCE29774.1  99 KHVDRMLNLIPRDGRT---VNMAPLLGKLFLDSGTEFTFGESFGSLDEQStqGEELLAACYQSLAGISKRRHATNKLS---LLFDTSFCDNVNKVHAFV 191
                 *******988666555...5************************9988863334555555555555556565555554...467899999999998888 PP

                 HHHHHHHHHHHHHCHCHC.SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC.CTTTT- CS
        p450 217 kdlldklieerretldsa.kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevl.gdkrep 313
                 +  + + +    ++  sa   ++ d+  ++ll++ +k+ +   +  el+++++++++ +++  s +l+ aL+++a+nP++ + lr+    v  g+ ++p
  CCE29774.1 192 DRQVSRALSAADSKTGSAeRPTNQDGERYVLLDQAAKQIQ---NPVELRHEMMNVFLPAFESISVVLANALFHIARNPSIWRDLRQQ--AVSlGE-QPP 284
                 8888888888877777776567899999999998555555...899***************************************98..343255.79* PP

                 HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.........EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTSCTESSCTT- CS
        p450 314 tyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.........ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekgnskrksfaf 402
                 t++ l++l   + v  E+LRlh  +  +l+R +++d+ ++          +lipkG++v++ l++ ++d +++ ++ ++F+p+RF+ +     +    f
  CCE29774.1 285 TFELLKSLSSFRYVMLESLRLHGSSG-RLERTAKRDTILPRgggpdgsspVLIPKGSQVSLDLSSHLNDRQIWgDDVQVFRPSRFEGR-----VTTWDF 377
                 **************************.************7445677899************************************999.....5689** PP

                 -TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSC.SSE CS
        p450 403 lPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileks.gll 453
                 +PF+ GpR+C+ ++  + +  ++l +++q+Fe+   + +dp+  + ++ +l+
  CCE29774.1 378 VPFSGGPRICPAQQQVIAQSVYLLLRMVQRFELV--ENRDPCLEFVEKlKLM 427
                 *********************************9..5667766665554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3314.43
//
Query:       CCE29775.1  [L=371]
Description: uncharacterized protein CPUR_03622 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2758.41
//
Query:       CCE29776.1  [L=350]
Description: uncharacterized protein CPUR_03623 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-19   69.5   0.0    7.3e-19   68.6   0.0    1.5  1  DUF2263   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2263  Uncharacterized protein conserved in bacteria (DUF2263)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   4.1e-23   7.3e-19      45     122 ..      96     175 ..      53     191 .. 0.79

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 4.1e-23
                 .....HHHHHHEEES--HHHHHHHHHHH-....SS--EEEEE--SSSTTTTGGGT--SHHHHHHHHBSHHHHHTT-HHHHHH CS
     DUF2263  45 tseeeeeetkievteestleaarrlvkee....gekvavLNfASaknpGGGflnGakAQEEsLarsSaLyasllkaeefYea 122
                  +++  +  +i++   +tleaa+r++ ++     ++vavLN+AS  +pGGG+l+Ga++QEEsL+ +++Lyasl++  efY+ 
  CCE29776.1  96 LTSKALSPMSISIHACDTLEAASRIYFSStsrsPPRVAVLNMASPLRPGGGVLTGATSQEESLCGRTTLYASLRE--EFYRL 175
                 44455566788*************99887889999**************************************99..99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2678.46
//
Query:       CCE29777.1  [L=637]
Description: uncharacterized protein CPUR_03624 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-34  118.3   2.0    4.4e-24   85.0   0.1    2.1  2  Fungal_trans_2  Fungal specific transcription factor domain
  ------ inclusion threshold ------
      0.054   13.2   0.0       0.11   12.3   0.0    1.4  1  SPOB_a          Sensor_kinase_SpoOB-type, alpha-helical domai
       0.27   11.2   6.9       0.61   10.2   6.9    1.6  1  AT_hook         AT hook motif


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.1   7.4e-28   4.4e-24       3     284 ..     153     432 ..     151     476 .. 0.82
   2 !   32.9   0.3   4.9e-12   2.9e-08     282     375 ..     532     628 ..     516     636 .. 0.86

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 7.4e-28
  Fungal_trans_2   3 l.dyyldnvapllspvpessnpfrkvllplalsnkallhallalsafhl.............qskgpkds......lereakrykslalkelqea 77 
                     l ++y+++++ +l++  e++n f++++lpla ++++l+h++la+s+ h              +             l+++   ++++al +l + 
      CCE29777.1 153 LwKHYFTHLSNVLTVEGEARNAFKDIILPLANEHQGLMHSILAVSSKHIdldspygsrilndN------PtatresLQHRGDFHHDEALDRLYKD 241
                     559**********************************************77666665554442......0555566999**************** PP

  Fungal_trans_2  78 laelsstlsrnekykdiLaai....Lllcsieissgd.vsdwrvhLeaatsliksrggskasssslsskarfllrifayldilssttlgrgpsfp 167
                     l +l ++ +    y ++Laa     L+l +   ++g+ ++++rvhL+a + li++  +       ++   +f+ ++f+y+    ++ + +g+ ++
      CCE29777.1 242 LDTLANKDD--PAYATVLAARygqmLCLLLQTRAEGNpRGEHRVHLQAYQTLIQHSPPE------NEVFRSFITEFFQYHIFADDLLWYSGLGCS 328
                     *********..9********666547777778*****7777**************9999......999*************************** PP

  Fungal_trans_2 168 seeyekllenkkeesdsgldplmGcsnslilliseisrLarekrsarkdseleplsileeaseleqrllswkprssdlepdldeterasslskdl 262
                        +e+ll++     +     l+G+ + l+ ++s+i++L++ +r+         ++   ++++l ++  ++   ++d++p+ ++ ++ ++     
      CCE29777.1 329 RLLSENLLRH----VSVPKPRLIGIGDGLFRCLSQITSLRNSIREKMAA----SREPVVDYTSLYRAS-EIDAAIRDWTPRWPPGDSRHRVG--- 411
                     **********....5555555************************9999....555555555555544.35555555555555556665655... PP

  Fungal_trans_2 263 telfrlaaliylyrlvlglpps 284
                       l+r+  ++ylyr+++   ps
      CCE29777.1 412 -PLYRQMMWVYLYRTIYPPLPS 432
                     .689999999999999765555 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 4.9e-12
  Fungal_trans_2 282 ppsspevqelvkkllellellpsspvaiasLlWplFiaGceavdeddRdfvrrrleele.qsrlgnvrrarqvleevWrrrddgee..kidWrdv 373
                     ++++++++ +v + l + e+ + s+ a++ Ll p  ++G+++ +  +R+ +r  ++ +  +++l+n+ r+ ++leevW+++d+ge    +dW  +
      CCE29777.1 532 SSDDSRIKLAVEESLTIFESFSLSDPAQTLLLIPCIVIGTACFSVRQRERLRAVVKVIRgYTGLRNCDRLTELLEEVWSQMDKGEWmvAWDWQAI 626
                     455999****************66665999****************************************************9887777888777 PP

  Fungal_trans_2 374 me 375
                      +
      CCE29777.1 627 AK 628
                     64 PP

>> SPOB_a  Sensor_kinase_SpoOB-type, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.8e-05      0.11      29      54 ..     588     613 ..     585     618 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
      SPOB_a  29 vIsGylqLgkydkaeeyieevvkelk 54 
                 vI+Gy+ L+++d+ +e++eev  ++ 
  CCE29777.1 588 VIRGYTGLRNCDRLTELLEEVWSQMD 613
                 9********************99986 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.9    0.0001      0.61       1      12 [.     108     119 ..     108     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0001
     AT_hook   1 kRkRGRPrKaat 12 
                 kR+RGRPrK+++
  CCE29777.1 108 KRPRGRPRKMPP 119
                 8********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 4929.80
//
Query:       CCE29778.1  [L=1579]
Description: related to multidrug transporter (yeast bile transporter) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-50  171.6   0.0    3.9e-30  105.1   0.0    2.7  2  ABC_tran      ABC transporter
    1.8e-38  132.8  23.0    1.3e-29  103.7  10.1    2.9  3  ABC_membrane  ABC transporter transmembrane region
    2.9e-09   36.7   0.0    0.00034   20.1   0.0    3.9  3  SMC_N         RecF/RecN/SMC N terminal domain
    0.00014   22.0   0.0      0.047   13.8   0.0    2.6  2  MMR_HSR1      50S ribosome-binding GTPase
    0.00034   21.1   0.1       0.44   10.9   0.1    2.7  2  AAA_16        AAA ATPase domain
    0.00055   19.9   0.1       0.55   10.1   0.0    2.4  2  RsgA_GTPase   RsgA GTPase
    0.00092   19.5   0.1        4.1    7.7   0.0    3.3  3  AAA_22        AAA domain
     0.0011   18.6   0.0       0.19   11.3   0.0    2.8  2  AAA_25        AAA domain
     0.0014   18.5   0.0        6.4    6.5   0.0    3.3  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0017   18.5   0.0       0.39   10.8   0.0    2.4  2  DUF87         Helicase HerA, central domain
     0.0062   15.6   0.0        0.3   10.1   0.0    2.2  2  T2SSE         Type II/IV secretion system protein
  ------ inclusion threshold ------
      0.017   14.3   0.1       0.23   10.7   0.0    2.2  2  DUF2075       Uncharacterized conserved protein (DUF2075)
       0.02   14.6   0.3        1.6    8.4   0.0    3.0  4  IstB_IS21     IstB-like ATP binding protein
      0.034   13.9   5.4        2.5    7.9   0.2    2.9  3  AAA_29        P-loop containing region of AAA domain
       0.05   12.5   0.1        1.4    7.7   0.0    2.2  2  AAA_10        AAA-like domain
      0.063   12.1   0.3        0.7    8.6   0.1    2.1  2  Adeno_IVa2    Adenovirus IVa2 protein
      0.067   12.2   0.1       0.18   10.8   0.0    1.6  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
       0.14   12.6   3.4        2.8    8.4   0.6    2.7  3  AAA_23        AAA domain
       0.27   10.9   0.3          4    7.1   0.0    2.2  2  AAA_15        AAA ATPase domain
       0.56    9.9   3.0         18    5.0   0.0    3.4  3  AAA_30        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   2.8e-20   2.6e-17       1     134 [.     628     782 ..     628     785 .. 0.83
   2 !  105.1   0.0   4.4e-33   3.9e-30       1     137 []    1300    1491 ..    1300    1491 .. 0.93

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 2.8e-20
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE........EETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGei........lldgkdlke.qeleslrkeigvlpqepqlfpeltvren......esdee 84 
                 l+n++l++ +ge+ +i G++G+GKS Ll++l+g+ +   G+i         +d +d k      +l   ++++ q p l + + +r+n        +++
  CCE29778.1 628 LNNINLSFPAGELSVISGKTGTGKSLLLSALLGECDLMDGTIfvpptvasPFDRHDDKAhPGNWILPGAVAYVGQSPWLESAS-LRDNilfglpFFKNR 725
                 79****************************************88887777555333333477899****************99.**********55555 PP

                 HHHHHHHSTTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                 xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDE 134
                  +++l+   lk+        ++t ++ ++ +LSgGqk r+ lara+ +++++l++D+
  CCE29778.1 726 YDAVLEVCALKKdieiltdGDQTELGANGINLSGGQKWRLTLARAIYSRAEILIMDD 782
                 55555555555555555555688888999***************************8 PP

  == domain 2  score: 105.1 bits;  conditional E-value: 4.4e-33
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsk 91  
                  lk vs+++k++e+++++G++GaGKS+L  +l + l+  +G++++dg d+++++l+ lr++++++pq+p lf+++ +r+n      + dee+++ ls+
  CCE29778.1 1300 LKGVSFDVKNNERIGVIGRTGAGKSSLTLALFRFLEARSGQVKIDGIDISKIRLHDLRSRLAIIPQDPVLFSGT-IRTNldpfedHTDEELKDCLSR 1395
                  799***********************************************************************.**********888889999999 PP

                  STTGG..................................................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxx..................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   92 lglke..................................................lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                  + l++                                                  +  + +++s+ +LS+Gq+q +++ara++++pk+++lDE+t+
  CCE29778.1 1396 VHLVDsapatpangpsssspsssssaaaapaaaapataaaddistmapknanifrDLSSGISESGGNLSQGQRQLLCIARAIVSRPKVMVLDEATS 1491
                  99988899999999999999999999999999999999999999999999999888889999999*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.5   1.4e+03      93     132 ..      46      85 ..      42      86 .. 0.89
   2 !   34.5   3.8   1.9e-11   1.7e-08      98     267 ..     392     559 ..     385     565 .. 0.91
   3 !  103.7  10.1   1.5e-32   1.3e-29      25     257 ..     992    1220 ..     969    1237 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
                   HHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH CS
  ABC_membrane  93 dtnsvGellsrltndvsklrdglgeklglffqslltfvgg 132
                   d +s+ e ++ ++n + k++ ++++ +g  +   +t++++
    CCE29778.1  46 DGKSTPESMAAFSNKAPKICLLISSVIGFGLSIAATIFSI 85 
                   67899999*******************9999999998875 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 1.9e-11
                   HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH CS
  ABC_membrane  98 GellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVk 194
                     + +++  d+  ++d+  ++l++++    +f+ +  ++ ++gw  + +++     +++ + + a++  k++ k +k+++k  +v++E+l g+r +k
    CCE29778.1 392 QAIANLVGVDTKHISDFAVMQLFIISSIGKLFLYSGYLVNLIGWIPFGAGILAWSFVLPANTIAARFYLKAETKLMKNRDKKLAVVNEALLGMRQIK 488
                   57999******************************************************************************************** PP

                   HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHH CS
  ABC_membrane 195 afgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslf 267
                     + e + ++k++  +e + ++ +++ +a+++l+ +  + + l+ a    ++++ + +g l ++ ++v + +f
    CCE29778.1 489 FSALEGQWEKKINAMREIEISSLKSVFKADSILFFCWVASPILLAATS--LAVYAITNGHLAPSIAFVSIGIF 559
                   **********************99999999999987655555555544..78999999999999977766555 PP

  == domain 3  score: 103.7 bits;  conditional E-value: 1.5e-32
                    HHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHH CS
  ABC_membrane   25 ildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgekl 119 
                      d+l+ +g++  ++l++y+++++++++a++i+++l++ +  ++++++ ++l r+++  i+r  +++ dt +vG++l+r+t d + +++ +++ +
    CCE29778.1  992 TSDNLTASGQSA-HDLSYYLWVYIAIAAASGIIGTLRFIWSFIMSIKAARTLFRRILFTIMRTRLRWLDTVPVGRVLNRMTADFDIIDNRITMDM 1085
                    344555543333.58******************************************************************************** PP

                    HHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHH CS
  ABC_membrane  120 glffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeak 214 
                    g ff+ +l ++g+++ +++++  +  + +++++  ++v++ +    +++k+ e++a ++++ +++ sl g+ t++af++ + ++++ +  l+++ 
    CCE29778.1 1086 GFFFWRVLGLLGVCVAALLVSRLMIPLAVVLFIAGAFVAIKFLDGARPVKRLESNAKSPVFELFNSSLAGVSTLRAFRKTQVYVDRMHGLLDTWD 1180
                    **********************99999999999999*********************************************************** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTH CS
  ABC_membrane  215 kagikkaianglligitqllgllsyalalwfGttlvisgelsv 257 
                    +++i   ++n++l+ ++ llg+++++++   G+  v s+ ++ 
    CCE29778.1 1181 TISIHNWTLNRWLGFRMALLGSIFTTVV---GIIVVGSSFVDA 1220
                    ********************99988777...555555544444 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0024       2.1     135     174 ..     422     790 ..     340     801 .. 0.71
   2 ?    3.8   0.0     0.037        33      28      49 ..    1314    1334 ..    1302    1346 .. 0.78
   3 !   20.1   0.0   3.8e-07   0.00034     110     209 ..    1340    1531 ..    1332    1538 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0024
                 T.................................................................................................. CS
                 x.................................................................................................. RF
       SMC_N 135 e.................................................................................................. 135
                                                                                                                    
  CCE29778.1 422 Lflysgylvnligwipfgagilawsfvlpantiaarfylkaetklmknrdkklavvneallgmrqikfsalegqwekkinamreieisslksvfkadsi 520
                 355555555555555555555555555555555555555555555555555555555555555555555666666666666666666666666777777 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CCE29778.1 521 lffcwvaspillaatslavyaitnghlapsiafvsigifkslevslsvlpelltsaidtlvsirridkylkgpemknnlteghdiafdnatiawpvdde 619
                 777888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CCE29778.1 620 vpeeerfilnninlsfpagelsvisgktgtgkslllsallgecdlmdgtifvpptvaspfdrhddkahpgnwilpgavayvgqspwlesaslrdnilfg 718
                 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                 .....................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HH CS
                 .....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 .....................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDek 174
                                                      +LSgG+k      L +A   +++a + ++D+i +a D++
  CCE29778.1 719 lpffknrydavlevcalkkdieiltdgdqtelgangiNLSGGQKW----RLTLARAIYSRAEILIMDDIFSAVDAH 790
                 88888899999999999999999999999999999999****995....677788889999999****99999986 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.037
                  EEEESTTSSHHHHHHHHHHHCT CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   28 aivGpNGSGKsnlldAilFvLG 49  
                   ++G+ G+GKs+l+ A+ F + 
  CCE29778.1 1314 GVIGRTGAGKSSLTLAL-FRFL 1334
                  69************999.6544 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 3.8e-07
                  EEEETTEEE-HHHHHHHHHCTT-STT....................................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx....................................................................... RF
       SMC_N  110 eykingkevtkkevsellesagiske....................................................................... 135 
                  ++ki+g +++k  +++l ++  i ++                                                                       
  CCE29778.1 1340 QVKIDGIDISKIRLHDLRSRLAIIPQdpvlfsgtirtnldpfedhtdeelkdclsrvhlvdsapatpangpsssspsssssaaaapaaaapataaad 1436
                  5677777777777777777777777777777777777777777777777777777777777799999999999999999999999999999999999 PP

                  .........................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SC CS
                  .........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 .........................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadk 207 
                                           +LS G+++L+ +a       v++  +++lDe  +a D +  + + + ++e+ +++ +ivi++r  ++++ d+
  CCE29778.1 1437 distmapknanifrdlssgisesggNLSQGQRQLLCIARA----IVSRPKVMVLDEATSAVDMATDALIQRSIREEFTDSTLIVIAHRLSTIADFDR 1529
                  9999999999999999999999999*********887643....455666889************************************99999988 PP

                  EE CS
                  xx RF
       SMC_N  208 lv 209 
                  ++
  CCE29778.1 1530 IL 1531
                  76 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.022        20       3      22 ..     642     661 ..     641     671 .. 0.88
   2 !   13.8   0.0   5.3e-05     0.047       1      42 [.    1312    1354 ..    1312    1404 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.022
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 +i G++ +GKS L++al+ge
  CCE29778.1 642 VISGKTGTGKSLLLSALLGE 661
                 689**************996 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 5.3e-05
                  EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1    1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvk 42  
                  +++++Gr+ +GKS+L  al++  +a+ ++ +   +di ++r++
  CCE29778.1 1312 RIGVIGRTGAGKSSLTLALFRFlEARSGQVKIDGIDISKIRLH 1354
                  699*****************98778888877777777776665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0073       6.5      25      45 ..     639     659 ..     624     693 .. 0.83
   2 !   10.9   0.1   0.00049      0.44      28     150 ..    1314    1495 ..    1306    1517 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0073
      AAA_16  25 elvllsGesGvGKsslvrell 45 
                 el ++sG  G+GKs l+ +ll
  CCE29778.1 639 ELSVISGKTGTGKSLLLSALL 659
                 7778*************9987 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00049
      AAA_16   28 llsGesGvGKsslvrellralekd.............ggiflrgkcdqlesaipysalaqalareellrqllde......aesaeleawrekleeal 105 
                   ++G  G GKssl  +l+r le++                                   ++ + ++ l+ + ++      +  ++l+++ ++ +e+l
  CCE29778.1 1314 GVIGRTGAGKSSLTLALFRFLEARsgqvkidgidiskI---------------------RLHDLRSRLAIIPQDpvlfsgTIRTNLDPFEDHTDEEL 1389
                  589***************99999944333333333330.....................33334455555555555555544445555555555555 PP

      AAA_16  106 a..............................................avpelagaea...srllellkrllallsrder............plvlvl 141 
                  +                                              +++ +a++ a   ++l   +++    ls+++r            p v+vl
  CCE29778.1 1390 KdclsrvhlvdsapatpangpsssspsssssaaaapaaaapataaadDISTMAPKNAnifRDLSSGISESGGNLSQGQRqllciaraivsrPKVMVL 1486
                  5555566666555555555555555555544444433333333333433333333335553333333333333333333444444444444777777 PP

      AAA_16  142 Ddlqwadea 150 
                  D++  a ++
  CCE29778.1 1487 DEATSAVDM 1495
                  777655554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00061      0.55      98     126 ..     637     665 ..     620     670 .. 0.86
   2 !    7.2   0.0     0.005       4.5     100     130 ..    1311    1341 ..    1288    1345 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00061
                  TTSEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelk 126
                  ++++sv+ G++G GKS L+ all+e +l 
   CCE29778.1 637 AGELSVISGKTGTGKSLLLSALLGECDLM 665
                  4689*******************998765 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.005
                   SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  100 ktsvlvGqSGvGKStLinallpelelktgev 130 
                   + + ++G +G+GKS+L  al   le++ g+v
   CCE29778.1 1311 ERIGVIGRTGAGKSSLTLALFRFLEARSGQV 1341
                   566789**********999988777777776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0075       6.7       8      27 ..     641     660 ..     637     679 .. 0.84
   2 !    7.7   0.0    0.0046       4.1      10      42 ..    1315    1340 ..    1308    1374 .. 0.81
   3 ?    0.0   0.0         1   9.4e+02      56     102 ..    1448    1491 ..    1429    1520 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0075
      AAA_22   8 lvvtGesGtGKTtllrrlle 27 
                  v+ G +GtGK++ll  ll 
  CCE29778.1 641 SVISGKTGTGKSLLLSALLG 660
                 689************99875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0046
      AAA_22   10 vtGesGtGKTtllrrlleqldeeakaeeerpev 42  
                  v+G +G+GK+ l   l++ l+++       +++
  CCE29778.1 1315 VIGRTGAGKSSLTLALFRFLEAR-------SGQ 1340
                  89*****************9864.......444 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 1
      AAA_22   56 llrellralglelkaerlsseellealeqalraravielliiDEaqh 102 
                  ++r+l + + +++ +   + ++ l  +++a+ +r  ++++++DEa  
  CCE29778.1 1448 IFRDLSSGISESGGN-LSQGQRQLLCIARAIVSR--PKVMVLDEATS 1491
                  444444444443333.333333333444445555..55******976 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00021      0.19      29      54 ..     634     659 ..     607     672 .. 0.79
   2 ?    4.0   0.0     0.037        33       8      53 ..    1286    1330 ..    1280    1336 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00021
      AAA_25  29 llpagelallaGapgtGKttlaldla 54 
                   pagel+++ G +gtGK+ l++ l 
  CCE29778.1 634 SFPAGELSVISGKTGTGKSLLLSALL 659
                 469******************99885 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.037
      AAA_25    8 savsvadlaapppprrwlvkgllpagelallaGapgtGKttlaldl 53  
                  ++++v+ ++  pp ++ +  ++   +e + ++G++g+GK+ l+l l
  CCE29778.1 1286 KDLVVGYSDDMPPVLKGVSFDV-KNNERIGVIGRTGAGKSSLTLAL 1330
                  5556666677777777777777.67889999************998 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0082       7.4       2      60 ..     641     717 ..     640     748 .. 0.68
   2 !    6.5   0.0    0.0072       6.4       3      36 ..    1314    1345 ..    1313    1388 .. 0.72
   3 ?    1.5   0.0      0.24   2.2e+02     236     271 ..    1462    1494 ..    1416    1523 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0082
      AAA_21   2 nvliGpNgsGKSnLLdaldllarl..................drdvegltdelsggggirkipslldlydpeipfef 60 
                  v+ G+ g+GKS LL al + ++l                  d+ +++++ +l+g + + +++  l + + +  + f
  CCE29778.1 641 SVISGKTGTGKSLLLSALLGECDLmdgtifvpptvaspfdrhDDKAHPGNWILPGAVAYVGQSPWLESASLRDNILF 717
                 6899**************87555565555555555555555555555555555555555555555555555555555 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0072
      AAA_21    3 vliGpNgsGKSnLLdaldllarldrdvegltdel 36  
                  ++iG+ g+GKS+L  al  +    + + + +++ 
  CCE29778.1 1314 GVIGRTGAGKSSLTLALFRFL--EARSGQVKIDG 1345
                  68***************5554..33333333333 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.24
      AAA_21  236 elSdGtkrllalltallralkkgsllliDEpEngLH 271 
                  +lS+G+++ll+++ a+ +++   ++ ++DE  +  +
  CCE29778.1 1462 NLSQGQRQLLCIARAIVSRP---KVMVLDEATSAVD 1494
                  78****************99...99****9666555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.025        23      28      47 ..     643     662 ..     641     687 .. 0.85
   2 !   10.8   0.0   0.00044      0.39      14      45 ..    1303    1332 ..    1292    1342 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.025
       DUF87  28 ilgsTGsGKSntvavLleel 47 
                 i g+TG+GKS + + Ll e 
  CCE29778.1 643 ISGKTGTGKSLLLSALLGEC 662
                 779**********9999775 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00044
       DUF87   14 vyldlnklvtrHlAilgsTGsGKSntvavLle 45  
                  v++d+++   ++++++g+TG+GKS ++  L++
  CCE29778.1 1303 VSFDVKNN--ERIGVIGRTGAGKSSLTLALFR 1332
                  67777554..99************99877765 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00033       0.3     131     156 ..     640     665 ..     581     671 .. 0.87
   2 ?    3.0   0.0      0.05        45     119     157 ..    1300    1338 ..    1278    1347 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00033
       T2SSE 131 lilvsGgTgsGKttllyallkeinks 156
                 l ++sG Tg+GK+ ll all e +  
  CCE29778.1 640 LSVISGKTGTGKSLLLSALLGECDLM 665
                 5689****************997755 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.05
       T2SSE  119 aevlrkavrerglilvsGgTgsGKttllyallkeinksd 157 
                   + ++  v+++  i v G Tg GK+ l+ al  ++++++
  CCE29778.1 1300 LKGVSFDVKNNERIGVIGRTGAGKSSLTLALFRFLEARS 1338
                  55555667888889999**************99999874 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00026      0.23       3      25 ..     640     662 ..     638     687 .. 0.85
   2 ?    0.9   0.1      0.23   2.1e+02       6      25 ..    1315    1334 ..    1312    1345 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
     DUF2075   3 vvlVtGvaGtGKtvvllnllael 25 
                 + +++G++GtGK+++l++ll e+
  CCE29778.1 640 LSVISGKTGTGKSLLLSALLGEC 662
                 569*****************998 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.23
     DUF2075    6 VtGvaGtGKtvvllnllael 25  
                  V G++G+GK+ + l+l+  l
  CCE29778.1 1315 VIGRTGAGKSSLTLALFRFL 1334
                  77**************9877 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.12     1e+02      49      67 ..     640     658 ..     622     668 .. 0.85
   2 ?   -3.5   0.0       8.4   7.5e+03     105     117 ..     771     783 ..     763     797 .. 0.71
   3 ?    8.4   0.0    0.0018       1.6      41      68 ..    1303    1331 ..    1295    1368 .. 0.75
   4 ?   -3.3   0.1       7.4   6.6e+03     106     146 ..    1478    1517 ..    1465    1532 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.12
   IstB_IS21  49 nivllGpsGvGKshlaial 67 
                   v+ G +G+GKs l  al
  CCE29778.1 640 LSVISGKTGTGKSLLLSAL 658
                 56899********998886 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.4
   IstB_IS21 105 rllkvdllilDdl 117
                  + ++++li+Dd+
  CCE29778.1 771 IYSRAEILIMDDI 783
                 467899*****98 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0018
   IstB_IS21   41 lsf.iekkenivllGpsGvGKshlaialg 68  
                   sf ++++e i ++G +G+GKs l+ al 
  CCE29778.1 1303 VSFdVKNNERIGVIGRTGAGKSSLTLALF 1331
                  555588999******************94 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 7.4
   IstB_IS21  106 llkvdllilDdlgllpldqaeaellfeviekryerrsiiit 146 
                  + ++++++lD+  +  +d a  +l+ + i + +  +++i+ 
  CCE29778.1 1478 VSRPKVMVLDEA-TSAVDMATDALIQRSIREEFTDSTLIVI 1517
                  457899999995.5677888877777777777766665554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2    0.0028       2.5      22      42 ..     637     658 ..     628     660 .. 0.80
   2 ?   -3.2   0.2       8.2   7.3e+03       4      42 ..    1182    1221 ..    1180    1223 .. 0.70
   3 ?    7.6   0.0    0.0034       3.1      15      41 ..    1303    1329 ..    1299    1341 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0028
      AAA_29  22 kg.atlltGpsGsGKSTllDAi 42 
                 +g   +++G++G+GKS ll A+
  CCE29778.1 637 AGeLSVISGKTGTGKSLLLSAL 658
                 344889***********99876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.2
      AAA_29    4 lqlvNWgtfdghtieidlkg..atlltGpsGsGKSTllDAi 42  
                  +++ NW   +   +++ l g  +t ++G + +G S+++DA 
  CCE29778.1 1182 ISIHNWTLNRWLGFRMALLGsiFTTVVGIIVVG-SSFVDAA 1221
                  677888665557777777777778888888888.7788885 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0034
      AAA_29   15 htieidlkgatlltGpsGsGKSTllDA 41  
                   +++++ ++ + ++G++G+GKS+l  A
  CCE29778.1 1303 VSFDVKNNERIGVIGRTGAGKSSLTLA 1329
                  5667776668889**********9655 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.072        64      24      53 ..     641     670 ..     636     674 .. 0.84
   2 ?    7.7   0.0    0.0016       1.4      14      52 ..    1303    1341 ..    1298    1354 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.072
      AAA_10  24 sliiGdlGnGKSvlakllvlyisllggkal 53 
                 s+i+G++G GKS+l   l   + l++g ++
  CCE29778.1 641 SVISGKTGTGKSLLLSALLGECDLMDGTIF 670
                 589***********9999888888887766 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0016
      AAA_10   14 vkgsktnasasliiGdlGnGKSvlakllvlyisllggka 52  
                  v   ++n+    +iG +G+GKS l+  l+ ++ ++ g++
  CCE29778.1 1303 VSFDVKNNERIGVIGRTGAGKSSLTLALFRFLEARSGQV 1341
                  55567899999*********************9999886 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00078       0.7      89     116 ..     640     668 ..     628     678 .. 0.79
   2 ?    0.7   0.0       0.2   1.8e+02      80     107 ..    1304    1330 ..    1297    1333 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00078
  Adeno_IVa2  89 iGviyGPtGsGksqllrnlis.sklisPi 116
                 + vi+G tG+Gks ll +l+  ++l++ +
  CCE29778.1 640 LSVISGKTGTGKSLLLSALLGeCDLMDGT 668
                 579****************9537888753 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.2
  Adeno_IVa2   80 slnyglqPviGviyGPtGsGksqllrnl 107 
                  s++++ +  iGvi G tG+Gks l  +l
  CCE29778.1 1304 SFDVKNNERIGVI-GRTGAGKSSLTLAL 1330
                  6677788889*98.9********98776 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.3   2.9e+03      34      50 ..     643     659 ..     617     662 .. 0.77
   2 ?   10.8   0.0    0.0002      0.18      19      68 ..    1300    1349 ..    1289    1353 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.3
                 EEE-TTSSHHHHHHHHH CS
        MeaB  34 ltGvPGaGkstlvealg 50 
                 + G  G+Gks l++al 
  CCE29778.1 643 ISGKTGTGKSLLLSALL 659
                 68999*******99985 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0002
                  HHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE--- CS
        MeaB   19 lerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavDPs 68  
                  l+ ++ +  + +++G+ G  GaGks l+ al   l +r  +v +  +D s
  CCE29778.1 1300 LKGVSFDVKNNERIGVIGRTGAGKSSLTLALFRFLEARSGQVKIDGIDIS 1349
                  666666777899**************************999999888865 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       7.2   6.4e+03      89     130 ..     363     403 ..     346     505 .. 0.63
   2 ?    8.4   0.6    0.0031       2.8      14      39 ..     632     658 ..     626     660 .. 0.78
   3 ?    3.8   0.0     0.081        73      24      40 ..    1315    1331 ..    1301    1364 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 7.2
      AAA_23  89 siererelskkkgkttkkaklelleideleqfisellgskki 130
                  ie + +  +k+gk+  ++  +  ++ +++q i +l+g++ +
  CCE29778.1 363 AIESDTSGEDKDGKK-GEEGDDDDSVLKSKQAIANLVGVDTK 403
                 333333333333322.22222222225556667766666655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0031
      AAA_23  14 eidF.skgltlItGpNGaGKTTildAi 39 
                 ++ F    l +I+G++G+GK+ +l A+
  CCE29778.1 632 NLSFpAGELSVISGKTGTGKSLLLSAL 658
                 4444444699**************997 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.081
      AAA_23   24 ItGpNGaGKTTildAik 40  
                  ++G +GaGK+++  A+ 
  CCE29778.1 1315 VIGRTGAGKSSLTLALF 1331
                  68*********865554 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.5      0.31   2.8e+02      23      43 ..     639     658 ..     628     659 .. 0.82
   2 ?    7.1   0.0    0.0044         4      27      83 ..    1314    1366 ..    1300    1462 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.31
      AAA_15  23 eeltvliGkNnsGKSsileal 43 
                 e l+v+ Gk ++GKS +l al
  CCE29778.1 639 E-LSVISGKTGTGKSLLLSAL 658
                 4.9***************998 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0044
      AAA_15   27 vliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvef 83  
                   +iG+ ++GKSs++ al  Fl+      +  +ki+  d+++ +  +   ++ I  + 
  CCE29778.1 1314 GVIGRTGAGKSSLTLALFRFLEAR----SGQVKIDGIDISKIRLHDLRSRLAIIPQD 1366
                  58********************77....67799999999988877777777776666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.02        18      19      38 ..     639     658 ..     634     669 .. 0.89
   2 ?    1.4   0.0      0.25   2.2e+02      22      49 ..    1314    1341 ..    1307    1349 .. 0.84
   3 ?    0.8   0.3      0.38   3.4e+02      51     110 ..    1427    1502 ..    1418    1516 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.02
      AAA_30  19 rvavltGpAGtGKttalkal 38 
                  ++v+ G  GtGK+ +l+al
  CCE29778.1 639 ELSVISGKTGTGKSLLLSAL 658
                 489*************9987 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.25
      AAA_30   22 vltGpAGtGKttalkalreaweaaggrv 49  
                   + G+ G+GK+ +  al + +ea+ g+v
  CCE29778.1 1314 GVIGRTGAGKSSLTLALFRFLEARSGQV 1341
                  578**********999999999986666 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.38
      AAA_30   51 glAptgkaAkvLaeelgieastiakllkrlk................grarlepgtllivDEagmvdtkqlaallk 110 
                  ++Ap  +aA+++++ +  +a+    l +                   +ra +++ ++++ DEa  +    ++al++
  CCE29778.1 1427 AAAPATAAADDISTMAPKNANIFRDLSSGISesggnlsqgqrqllciARAIVSRPKVMVLDEATSAVDMATDALIQ 1502
                  4677777777777544444444444444444666666677777778865667777*******98875555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.43
# Mc/sec: 10962.47
//
Query:       CCE29779.1  [L=230]
Description: uncharacterized protein CPUR_03626 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-05   24.5   2.7    2.3e-05   24.5   2.7    2.3  3  HIG_1_N   Hypoxia induced protein conserved region


Domain annotation for each model (and alignments):
>> HIG_1_N  Hypoxia induced protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3     0.089   1.6e+03       6      24 ..      28      45 ..      24      48 .. 0.75
   2 ?   -3.7   0.0      0.85   1.5e+04      11      19 ..      60      68 ..      55      71 .. 0.74
   3 !   24.5   2.7   1.3e-09   2.3e-05      25      51 ..     135     161 ..     117     162 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.089
     HIG_1_N  6 piGilatvgalvrglrsmk 24
                 +G+++ v+a  r + +++
  CCE29779.1 28 TLGLGGAVVAS-RRYAAFR 45
                67888888887.7777776 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.85
     HIG_1_N 11 atvgalvrg 19
                +t ga v++
  CCE29779.1 60 GTFGAIVYA 68
                677787776 PP

  == domain 3  score: 24.5 bits;  conditional E-value: 1.3e-09
     HIG_1_N  25 rgdskqsnrlmraRiaaQaftvlalva 51 
                 r  ++++++l +aR++aQ++t+++l+a
  CCE29779.1 135 RSPMSTAQKLVQARMYAQGLTLAVLIA 161
                 345679*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1707.97
//
Query:       CCE29780.1  [L=498]
Description: related to zinc finger protein SFP1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00039   20.6   0.5      0.032   14.4   0.2    2.3  2  zf-C2H2_aberr  Aberrant zinc-finger
     0.0022   18.4  10.7      0.059   13.9   0.7    3.6  3  zf-C2H2        Zinc finger, C2H2 type
  ------ inclusion threshold ------
      0.021   15.6   9.8        1.4   10.0   0.3    3.9  3  zf-C2H2_4      C2H2-type zinc finger
      0.049   14.1   0.8      0.049   14.1   0.8    3.3  3  zf-H2C2_2      Zinc-finger double domain
        2.3    8.3   5.6        0.8    9.8   0.1    2.6  2  zf-C2H2_6      C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2_aberr  Aberrant zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   8.9e-06     0.032     137     163 ..     400     426 ..     387     436 .. 0.81
   2 ?    4.0   0.0     0.014        49     142     163 ..     466     485 ..     455     494 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.9e-06
  zf-C2H2_aberr 137 kkdliyCripGCgkrfkslmaYkYhck 163
                    +++ + C+++GC k +k+  + kYh  
     CCE29780.1 400 EHKPFKCPVIGCEKAYKNQNGLKYHKM 426
                    455699*******************64 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.014
  zf-C2H2_aberr 142 yCripGCgkrfkslmaYkYhck 163
                     C    Cgkr+k+l + kY  +
     CCE29780.1 466 NC--DTCGKRYKNLNGLKYVRQ 485
                    45..46*************765 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.16   5.6e+02       6      23 .]     116     134 ..     116     134 .. 0.91
   2 !   13.9   0.7   1.6e-05     0.059       1      23 []     404     429 ..     404     429 .. 0.95
   3 !    8.1   0.6    0.0011       4.1       1      17 [.     465     481 ..     465     482 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.16
                 TTEEESSHHHHHHHHHC.C CS
     zf-C2H2   6 CgksFkrksnLkrHirt.H 23 
                 C k  ++ ++L +H+   H
  CCE29780.1 116 CEKILPNLHDLLQHYEEsH 134
                 99999*********98777 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.6e-05
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 +kCp  +C k +k++  Lk H +  H
  CCE29780.1 404 FKCPviGCEKAYKNQNGLKYHKMHgH 429
                 8********************98877 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0011
                 EEETTTTEEESSHHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnLk 17 
                 + C+ Cgk++k+   Lk
  CCE29780.1 465 FNCDTCGKRYKNLNGLK 481
                 89*********988775 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.6     0.087   3.1e+02       5      24 .]     115     134 ..     113     134 .. 0.88
   2 ?   10.0   0.3   0.00038       1.4       1      20 [.     404     425 ..     404     427 .. 0.91
   3 ?    6.9   0.2    0.0037        13       1      17 [.     465     481 ..     465     484 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.087
   zf-C2H2_4   5 iCgksFsskkaLlrHlkthH 24 
                  C k  ++ ++Ll+H +  H
  CCE29780.1 115 CCEKILPNLHDLLQHYEESH 134
                 49*************98877 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00038
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHl 20 
                 fkCp+  C k ++++++L+ H 
  CCE29780.1 404 FKCPVigCEKAYKNQNGLKYHK 425
                 89*******************4 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0037
   zf-C2H2_4   1 fkCpiCgksFsskkaLl 17 
                 f C+ Cgk++++ ++L+
  CCE29780.1 465 FNCDTCGKRYKNLNGLK 481
                 78**********99975 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.3   0.00067       2.4      13      26 .]     402     417 ..     393     417 .. 0.85
   2 ?   -3.4   1.4       4.7   1.7e+04       1      12 [.     420     432 ..     420     436 .. 0.67
   3 ?   14.1   0.8   1.4e-05     0.049      11      26 .]     461     476 ..     458     476 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00067
   zf-H2C2_2  13 kpyeCp..lCdkaFkt 26 
                 kp++Cp   C ka+k+
  CCE29780.1 402 KPFKCPviGCEKAYKN 417
                 8*****877*****97 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.7
   zf-H2C2_2   1 nLrrHirk.Htge 12 
                 +L++H    H ++
  CCE29780.1 420 GLKYHKMHgHQSQ 432
                 5999976547665 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 1.4e-05
   zf-H2C2_2  11 gekpyeCplCdkaFkt 26 
                 +ekp++C+ C+k++k+
  CCE29780.1 461 KEKPFNCDTCGKRYKN 476
                 79************97 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   1.7      0.53   1.9e+03       4      26 ..     406     431 ..     404     432 .. 0.79
   2 ?    9.8   0.1   0.00022       0.8       2      15 ..     465     478 ..     465     480 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.53
   zf-C2H2_6   4 Csv..CsksFpslqaLggHkks.Hrk 26 
                 C+v  C k ++ +  L  Hk + H +
  CCE29780.1 406 CPVigCEKAYKNQNGLKYHKMHgHQS 431
                 5555599*********99*9888876 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00022
   zf-C2H2_6   2 heCsvCsksFpslq 15 
                 ++C++C+k+++ l 
  CCE29780.1 465 FNCDTCGKRYKNLN 478
                 89*******98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 3238.39
//
Query:       CCE29781.1  [L=764]
Description: uncharacterized protein CPUR_03628 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-31  108.6   5.2      2e-08   34.1   0.0    5.2  5  Kelch_4   Galactose oxidase, central domain
    1.6e-25   88.6   1.0    5.4e-07   29.5   0.0    4.6  4  Kelch_5   Kelch motif
    5.3e-25   86.8   2.4    7.2e-05   22.9   0.0    5.0  5  Kelch_6   Kelch motif
    5.9e-23   80.2   0.4    3.8e-05   23.2   0.0    5.0  6  Kelch_1   Kelch motif
    1.5e-21   76.2   1.4    7.2e-07   29.3   0.1    5.5  6  Kelch_3   Galactose oxidase, central domain
    1.3e-20   72.5   2.4    0.00047   20.0   0.0    4.6  4  Kelch_2   Kelch motif
    6.3e-08   32.8   0.1    1.1e-07   32.1   0.1    1.3  1  BTB       BTB/POZ domain
  ------ inclusion threshold ------
       0.16   12.1   0.0       0.41   10.8   0.0    1.7  1  BACK      BTB And C-terminal Kelch


Domain annotation for each model (and alignments):
>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.2     3e-07   0.00068       4      45 ..      96     141 ..      95     145 .. 0.84
   2 !   34.1   0.0   8.9e-12     2e-08       2      43 ..     147     188 ..     147     196 .. 0.94
   3 !   24.8   0.0     7e-09   1.6e-05       1      43 [.     198     240 ..     198     241 .. 0.94
   4 !   27.6   0.0   9.5e-10   2.1e-06       1      37 [.     246     281 ..     246     290 .. 0.94
   5 ?   -0.9   0.0      0.79   1.8e+03      34      45 ..     400     411 ..     397     413 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3e-07
     Kelch_4   4 ghsatsipdgtiylfGGrgedg.tllndlylldlstntWrrl...g 45 
                 ++s+t+++++ i+ fGG    + +++n++ +ldl++ +W+ +   g
  CCE29781.1  96 NASVTYCGNNQIFAFGGFDQYTdEVYNHVLRLDLASHQWSLVdnyG 141
                 89***************7654349***************9885555 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 8.9e-12
     Kelch_4   2 RaghsatsipdgtiylfGGrgedgtllndlylldlstntWrr 43 
                 R+gh+at  +++++ +fGG++e  t l+dl ++dl++ +W++
  CCE29781.1 147 RMGHTATLYQGNKLLVFGGENEHRTYLSDLIVFDLKSAHWTQ 188
                 9*********************99****************86 PP

  == domain 3  score: 24.8 bits;  conditional E-value: 7e-09
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedg.tllndlylldlstntWrr 43 
                 +Ra h+a+    ++++++GG+++++  +l+d++ ldl+t tW++
  CCE29781.1 198 GRARHAAVLH-EDKLFIIGGITGQNnYVLDDICYLDLKTFTWSK 240
                 59********.69***********88****************97 PP

  == domain 4  score: 27.6 bits;  conditional E-value: 9.5e-10
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldls 37 
                 +R++hsa+ ++ +++++fGG +ed+  ++dl+ ldl+
  CCE29781.1 246 GRFDHSACIWG-DRVWVFGGLSEDMDKVSDLWWLDLK 281
                 59********6.9**********************97 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.79
     Kelch_4  34 ldlstntWrrlg 45 
                 ldl t +W++l+
  CCE29781.1 400 LDLNTLRWQKLA 411
                 8********985 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   4.4e-08   9.8e-05       7      42 .]      96     132 ..      91     132 .. 0.86
   2 !   14.3   0.0   1.3e-05      0.03       1      41 [.     143     183 ..     143     184 .. 0.84
   3 !   29.5   0.0   2.4e-10   5.4e-07       1      42 []     195     236 ..     195     236 .. 0.97
   4 !   17.8   0.1   1.1e-06    0.0025       4      40 ..     246     281 ..     245     282 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4.4e-08
     Kelch_5   7 ghcavtvs.ekiYvyGGkvgrdgsvsddvyvLdlpsf 42 
                 ++++ +++ ++i+ +GG+++ +++v+++v++Ldl s+
  CCE29781.1  96 NASVTYCGnNQIFAFGGFDQYTDEVYNHVLRLDLASH 132
                 67777885489***********************985 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.3e-05
     Kelch_5   1 iPppRaghcavtv.sekiYvyGGkvgrdgsvs.ddvyvLdlps 41 
                 iP  R+gh a  + ++k++v+GG +  ++  + +d+ v+dl+s
  CCE29781.1 143 IPGVRMGHTATLYqGNKLLVFGGEN--EHRTYlSDLIVFDLKS 183
                 7999******97648**********..55554389*9*99987 PP

  == domain 3  score: 29.5 bits;  conditional E-value: 2.4e-10
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlpsf 42 
                 iP +Ra+h+av +++k++++GG++g+++ v dd+  Ldl++f
  CCE29781.1 195 IPKGRARHAAVLHEDKLFIIGGITGQNNYVLDDICYLDLKTF 236
                 6899***********************************998 PP

  == domain 4  score: 17.8 bits;  conditional E-value: 1.1e-06
     Kelch_5   4 pRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlp 40 
                 +R++h+a+++++ ++v+GG + +d++  +d++ Ldl+
  CCE29781.1 246 GRFDHSACIWGDRVWVFGGLS-EDMDKVSDLWWLDLK 281
                 7********************.677777777777876 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.6e-06    0.0035       6      43 ..      97     137 ..      92     145 .. 0.81
   2 !   22.4   0.0   4.8e-08   0.00011       2      48 ..     147     197 ..     146     199 .. 0.85
   3 !   22.9   0.0   3.2e-08   7.2e-05       2      42 ..     199     240 ..     198     241 .. 0.96
   4 !   20.2   0.0   2.4e-07   0.00054       3      37 ..     248     282 ..     246     284 .. 0.86
   5 ?   -2.6   0.0       3.6   8.2e+03      33      44 ..     400     411 ..     397     412 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.6e-06
     Kelch_6   6 slvs.vgg.kiYifGGytds.spylnkvwvydpetksWeql 43 
                 ++v+ +g+ +i++fGG +++ ++ +n v+++d+ ++ W+ +
  CCE29781.1  97 ASVTyCGNnQIFAFGGFDQYtDEVYNHVLRLDLASHQWSLV 137
                 4455255459****************************997 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 4.8e-08
     Kelch_6   2 raghslvsvgg.kiYifGGytdsspylnkvwvydpetksWeq..lp.plpv 48 
                 r+gh++++++g k+ +fGG +   +yl++++v+d+++  W+q  ++ p+p+
  CCE29781.1 147 RMGHTATLYQGnKLLVFGGENEHRTYLSDLIVFDLKSAHWTQpqVSgPIPK 197
                 899*****9977********988*****************98665335655 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 3.2e-08
     Kelch_6   2 raghslvsvggkiYifGGytds.spylnkvwvydpetksWeq 42 
                 ra h++v++ +k++i+GG t++ +  l++++ +d++t +W++
  CCE29781.1 199 RARHAAVLHEDKLFIIGGITGQnNYVLDDICYLDLKTFTWSK 240
                 789*************************************86 PP

  == domain 4  score: 20.2 bits;  conditional E-value: 2.4e-07
     Kelch_6   3 aghslvsvggkiYifGGytds.spylnkvwvydpet 37 
                   hs++++g+++++fGG++ + ++  +++w++d++ 
  CCE29781.1 248 FDHSACIWGDRVWVFGGLSEDmDKV-SDLWWLDLKG 282
                 57******************96655.7889999875 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 3.6
     Kelch_6  33 ydpetksWeqlp 44 
                 +d+ t +W++l+
  CCE29781.1 400 LDLNTLRWQKLA 411
                 7999*****986 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.5e-06    0.0055      11      42 ..     104     137 ..     100     139 .. 0.94
   2 !   22.1   0.0   3.8e-08   8.5e-05       5      41 ..     151     188 ..     147     189 .. 0.91
   3 !   23.2   0.0   1.7e-08   3.8e-05       2      41 ..     199     240 ..     198     241 .. 0.97
   4 !   12.5   0.0   3.8e-05     0.084       2      35 ..     247     281 ..     246     289 .. 0.93
   5 ?   -3.9   0.0       4.9   1.1e+04      28      43 ..     396     411 ..     394     412 .. 0.80
   6 ?   -3.0   0.0       2.6   5.9e+03      23      35 ..     455     467 ..     452     467 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.5e-06
                 TTEEEEEEEBCS..SSBEEEEEEEETTTTEEEEE CS
     Kelch_1  11 ggkiYviGGsdg..gnalssvevyDpetntWrel 42 
                 +++i+++GG+d    +  + v ++D+ +++W+ +
  CCE29781.1 104 NNQIFAFGGFDQytDEVYNHVLRLDLASHQWSLV 137
                 8******************************965 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 3.8e-08
                 EEEEEETTEEEEEEEBCS.SSBEEEEEEEETTTTEEEE CS
     Kelch_1   5 agavvvggkiYviGGsdg.gnalssvevyDpetntWre 41 
                  +  + g+k+ v+GG ++  ++ls++ v+D+++  W++
  CCE29781.1 151 TATLYQGNKLLVFGGENEhRTYLSDLIVFDLKSAHWTQ 188
                 566788******************************85 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 1.7e-08
                 BBSEEEEEETTEEEEEEEBCS..SSBEEEEEEEETTTTEEEE CS
     Kelch_1   2 ragagavvvggkiYviGGsdg..gnalssvevyDpetntWre 41 
                 ra+++av + +k+++iGG  g  +  l+++ ++D++t tW++
  CCE29781.1 199 RARHAAVLHEDKLFIIGGITGqnNYVLDDICYLDLKTFTWSK 240
                 9***************************************98 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 3.8e-05
                 BBSEEEEEETTEEEEEEEBCS.SSBEEEEEEEETT CS
     Kelch_1   2 ragagavvvggkiYviGGsdg.gnalssvevyDpe 35 
                 r  ++a+  g+++ v+GG ++    +s+++++D++
  CCE29781.1 247 RFDHSACIWGDRVWVFGGLSEdMDKVSDLWWLDLK 281
                 789*******************9999999999986 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 4.9
                 EEEEEETTTTEEEEEC CS
     Kelch_1  28 svevyDpetntWrelp 43 
                 s+ ++D+ t  W +l+
  CCE29781.1 396 SLSALDLNTLRWQKLA 411
                 55678999999*9987 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 2.6
                 SSBEEEEEEEETT CS
     Kelch_1  23 gnalssvevyDpe 35 
                  ++ls+++ +D++
  CCE29781.1 455 EEYLSDIMEIDLR 467
                 469*****99986 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.6   1.5e+04       6      13 ..      17      27 ..      17      43 .. 0.70
   2 !   29.3   0.1   3.2e-10   7.2e-07       1      48 [.     104     154 ..     104     155 .. 0.91
   3 !   28.4   0.0   6.3e-10   1.4e-06       1      48 [.     157     206 ..     157     207 .. 0.93
   4 ?    4.8   0.0     0.016        36       1      16 [.     208     223 ..     208     242 .. 0.70
   5 !    7.3   0.0    0.0027       5.9       1      26 [.     256     280 ..     256     284 .. 0.84
   6 ?   -1.1   0.0       1.2   2.6e+03      21      36 ..     397     412 ..     392     415 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.6
     Kelch_3  6 ifGGlgd...d 13
                ifGG  +   +
  CCE29781.1 17 IFGGPSAhapP 27
                89999876653 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 3.2e-10
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaata 48 
                 ++ ++ fGG++  + +++n v+++dl++++W  +   ++ p+ R+gh+at+
  CCE29781.1 104 NNQIFAFGGFDQYTDEVYNHVLRLDLASHQWSLVdnyGDIPGVRMGHTATL 154
                 688999*****8889*****************7767799**********97 PP

  == domain 3  score: 28.4 bits;  conditional E-value: 6.3e-10
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaata 48 
                 g++l++fGG++  ++++l+d+ v+dl +  W++    ++ p +Ra haa++
  CCE29781.1 157 GNKLLVFGGEN-EHRTYLSDLIVFDLKSAHWTQPqvsGPIPKGRARHAAVL 206
                 89*********.8*******************8888999999**9999875 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.016
     Kelch_3   1 gdrlyifGGlgddgqd 16 
                 +d+l+i+GG +++++ 
  CCE29781.1 208 EDKLFIIGGITGQNNY 223
                 589********55554 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0027
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydl 26 
                 gdr+++fGGl  d  d ++d++ +dl
  CCE29781.1 256 GDRVWVFGGLSED-MDKVSDLWWLDL 280
                 89*********65.888888887776 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 1.2
     Kelch_3  21 vyvydldtntWaeias 36 
                 + ++dl+t  W+++a+
  CCE29781.1 397 LSALDLNTLRWQKLAE 412
                 6689********9875 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.5e-05     0.057       5      45 ..      97     137 ..      93     139 .. 0.87
   2 !   18.1   0.0   8.4e-07    0.0019       2      46 ..     147     190 ..     146     193 .. 0.88
   3 !   20.0   0.0   2.1e-07   0.00047       1      44 [.     198     240 ..     198     241 .. 0.96
   4 !   17.2   0.3   1.6e-06    0.0035       1      38 [.     246     281 ..     246     282 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
     Kelch_2   5 hsss.vpggkiyvvGGahtdnpnlsssdvhvldlekhvWeev 45 
                  s++ +++++i+ +GG+ ++ ++++ ++v  ldl +h+W++v
  CCE29781.1  97 ASVTyCGNNQIFAFGGF-DQYTDEVYNHVLRLDLASHQWSLV 137
                 56663569*********.*********************987 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 8.4e-07
     Kelch_2   2 rgghsss.vpggkiyvvGGahtdnpnlsssdvhvldlekhvWeevt 46 
                 r+gh+++ + g+k++v+GG    +   + sd+ v+dl++  W+  +
  CCE29781.1 147 RMGHTATlYQGNKLLVFGGE--NEHRTYLSDLIVFDLKSAHWTQPQ 190
                 6777777699**********..****************99999766 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 2.1e-07
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWee 44 
                 +r++h+++  ++k++++GG+ t+ +n + +d+  ldl++ +W++
  CCE29781.1 198 GRARHAAVLHEDKLFIIGGI-TGQNNYVLDDICYLDLKTFTWSK 240
                 599*****************.******************99986 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 1.6e-06
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldle 38 
                 +r+ hs++ +g+++ v+GG   +++ ++ sd+++ldl+
  CCE29781.1 246 GRFDHSACIWGDRVWVFGGL--SEDMDKVSDLWWLDLK 281
                 5899****************..**************86 PP

>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.1   4.7e-11   1.1e-07      20     108 ..     559     654 ..     552     657 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 4.7e-11
                 TEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-.........CGGGHHHHHHHHHHHT-HHHHHHHHHHHH CS
         BTB  20 gkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtgeleit.........seenleelLaaadllqiprlkkaceeflk 108
                  + +++hk++L  r p F +l +s+ ++e +++++++++  +++++a+L ++Yt+ +  t         + ++++ lL + +l+++++l  +c + l 
  CCE29781.1 559 SQPIHVHKLILQTRWPHFARLYNSQ-MAEFHTKKMHIPE-PYSVVKAFLLYLYTDSIHGTseadsdattDLSDVAGLLVMSNLYNLQHLRLLCVNRLA 654
                 5789*********************.8888888777665.79**************999999****999899********************998776 PP

>> BACK  BTB And C-terminal Kelch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.41       3      48 ..     664     709 ..     662     718 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
        BACK   3 gilefAeaysceeLaeaakefilknfeevlkseeFleLskeqllel 48 
                  i+  A   + e L++++ +++ ++  ++++++ Fl+L+  +l+el
  CCE29781.1 664 VIWYCAGLANEEWLRKRSATYCMTHWGRIVRTQGFLRLPRASLVEL 709
                 5777888899999******************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 5652.98
//
Query:       CCE29782.1  [L=588]
Description: related to cell cycle protein p55cdc [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-17   63.4   3.9    2.3e-05   24.6   0.3    4.3  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    3.3e-16   59.4  19.1    0.00032   21.4   0.1    6.8  7  WD40         WD domain, G-beta repeat
      6e-07   29.5   0.1    0.00064   19.6   0.0    2.6  2  eIF2A        Eukaryotic translation initiation factor eIF2A
    3.8e-06   26.1   0.1    0.00033   19.7   0.0    3.3  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   8.4e-09   3.7e-05      33      91 ..     311     368 ..     285     369 .. 0.85
   2 !   24.6   0.3   5.2e-09   2.3e-05      23      90 ..     386     451 ..     383     453 .. 0.93
   3 !   13.4   0.1   1.6e-05     0.071      32      90 ..     436     495 ..     432     497 .. 0.84
   4 !    9.4   0.1   0.00028       1.3       1      54 [.     448     502 ..     448     520 .. 0.68
   5 !    6.1   0.0    0.0031        14      33      68 ..     525     560 ..     510     566 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 8.4e-09
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                   e+  d  v+s++W++dg    v+   gev++ d+++++ ++s+  +++ +v  +gW++
   CCE29782.1 311 LESPADTYVSSVKWSEDGAYVGVGLGTGEVQIWDVSEAQKIRSMYGHDT-RVGVMGWSK 368
                  56677899***********************************977777.7******86 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 5.2e-09
  ANAPC4_WD40  23 RlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  R+  ++v +l   ++ sev +L+W+ dg  La + +d+ v++ da s +v +  +++++ av+ l+W+
   CCE29782.1 386 RIAEHKVAEL--VSHTSEVCGLEWRSDGAQLATGGNDNLVSIWDARSLTVPKFTKTNHKAAVKALSWC 451
                  7777888888..7899**********************************9999999999*******6 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 1.6e-05
  ANAPC4_WD40  32 leedkedsevrsLaWkp.dgklLava..ysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +++++++  v++L+W p + +lLa +    d ++++ ++ sg  v+s++++s+  vt+l W+
   CCE29782.1 436 FTKTNHKAAVKALSWCPwNMNLLATGggSYDRHIHFWNSTSGARVNSIDTGSQ--VTSLRWS 495
                  5678999********99466889986224688*******************99..******7 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00028
  ANAPC4_WD40   1 lswcp.tmDLiAla..tedgellvfRl.ngqrvwtleedkedsevrsLaWkpdgklLa 54 
                  lswcp +m+L+A +  + d +++     +g rv ++   +++s+v+sL+W+p  + ++
   CCE29782.1 448 LSWCPwNMNLLATGggSYDRHIHFWNStSGARVNSI---DTGSQVTSLRWSPHYREIV 502
                  589997899999972245555554332266777777...9999999999999876665 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0031
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  e ++++s+v + + +pdg++La a +d ++++ ++ 
   CCE29782.1 525 EIPAHESRVLHSCLSPDGQMLATAAADESLKFWKIF 560
                  5578889999999**************999987765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.1   4.9e+03      19      38 .]     284     301 ..     281     301 .. 0.67
   2 !    6.7   0.1    0.0032        14      13      38 .]     319     344 ..     305     344 .. 0.81
   3 ?   -0.5   0.1       0.6   2.7e+03       2      30 ..     349     376 ..     348     387 .. 0.54
   4 !   21.4   0.1   7.1e-08   0.00032       4      38 .]     392     427 ..     389     427 .. 0.91
   5 !   12.5   0.2   4.9e-05      0.22       8      38 .]     439     473 ..     432     473 .. 0.69
   6 !   12.3   0.3   5.6e-05      0.25      12      38 .]     488     516 ..     477     516 .. 0.84
   7 !   14.8   0.0   8.7e-06     0.039       8      38 .]     527     558 ..     520     558 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
                 ETTSSEEEEEETTSEEEEEE CS
        WD40  19 spdgawlasGsdDgtvriWd 38 
                 s+ ++  a G   ++v++W+
  CCE29782.1 284 SSGNQV-AIGL-ERSVYVWS 301
                 444444.5688.99*****5 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0032
                 EEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40  13 vtslafspdgawlasG.sdDgtvriWd 38 
                 v+s+++s dga++  G +  g v iWd
  CCE29782.1 319 VSSVKWSEDGAYVGVGlG-TGEVQIWD 344
                 99**********834677.99999998 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.6
                 EEEEEEESS.SS..EEEEEEETTSSEEEEEET CS
        WD40   2 qclrtltGH.ss..vtslafspdgawlasGsd 30 
                 q++r+  GH +   v +     ++++l+sG +
  CCE29782.1 349 QKIRSMYGHdTRvgVMGW----SKHLLSSGAR 376
                 677888899554444443....4444666654 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 7.1e-08
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + +l  H s v++l + +dga la+G+ D+ v iWd
  CCE29782.1 392 VAELVSHtSEVCGLEWRSDGAQLATGGNDNLVSIWD 427
                 667889*777*************************9 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 4.9e-05
                 ESS.SSEEEEEEETTSSE.EEEE..ETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgaw.lasG..sdDgtvriWd 38 
                 t H   v +l+++p +   la+G  s+D+++++W+
  CCE29782.1 439 TNHkAAVKALSWCPWNMNlLATGggSYDRHIHFWN 473
                 468555999965555555467875469*******8 PP

  == domain 6  score: 12.3 bits;  conditional E-value: 5.6e-05
                 SEEEEEEETTSSEEEEEET..TSEEEEEE CS
        WD40  12 svtslafspdgawlasGsd..DgtvriWd 38 
                  vtsl++sp+ + ++s+s   D+++ iW+
  CCE29782.1 488 QVTSLRWSPHYREIVSSSGfpDNSLSIWS 516
                 5*************9887567*******5 PP

  == domain 7  score: 14.8 bits;  conditional E-value: 8.7e-06
                 ESS.SSE..EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssv..tslafspdgawlasGsdDgtvriWd 38 
                  +H s v  ++l  spdg++la++  D ++++W+
  CCE29782.1 527 PAHeSRVlhSCL--SPDGQMLATAAADESLKFWK 558
                 589777854455..********9988*******6 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0011       4.8     103     144 ..     319     357 ..     294     369 .. 0.78
   2 !   19.6   0.0   1.4e-07   0.00064      57     178 ..     397     517 ..     375     528 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0011
                 --EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-T CS
       eIF2A 103 rNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaa 144
                   ++++s+ g +v + G+g   Ge++iwdv++ +ki ++   
  CCE29782.1 319 VSSVKWSEDGAYVGV-GLG--TGEVQIWDVSEAQKIRSMYGH 357
                 557999999999854.455..79***********99987654 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1.4e-07
                 ESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEEE....ES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-.TT--EEE CS
       eIF2A  57 kkegpihdvaWspkskefaviyGkmpakvslfdlkvkvisklee....qkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaea.anatlve 150
                 +++ ++  ++W +++ ++a   G  ++ vs++d +   + k+ +    ++  ++ ++p +  +l  G g+   ++ +w+ ++   +++++  ++ t++ 
  CCE29782.1 397 SHTSEVCGLEWRSDGAQLA--TGGNDNLVSIWDARSLTVPKFTKtnhkAAVKALSWCPWNMNLLATGGGSYDRHIHFWNSTSGARVNSIDTgSQVTSLR 493
                 3445588999999999876..799**********955555554400004456789*****99999999*************9999999876378999** PP

                 E-TTSSEEEEEE-TTT-SSS-EEEEEET CS
       eIF2A 151 wspdgryvlTattaprlrvdngfkiwsy 178
                 wsp+ r ++ ++ +p    dn++ iwsy
  CCE29782.1 494 WSPHYREIVSSSGFP----DNSLSIWSY 517
                 **************8....9******99 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.1   4.6e+02     182     219 ..     311     348 ..     297     361 .. 0.80
   2 ?    1.3   0.0     0.031   1.4e+02     184     214 ..     396     426 ..     366     430 .. 0.80
   3 !   19.7   0.0   7.3e-08   0.00033     182     219 ..     524     562 ..     428     567 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.1
    Ge1_WD40 182 lkieehsliveaafspdGtalatasedGevkffqvyle 219
                 l+   ++ +++  +s dG+ + +    Gev+ + v   
  CCE29782.1 311 LESPADTYVSSVKWSEDGAYVGVGLGTGEVQIWDVSEA 348
                 45556678999999******************998654 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.031
    Ge1_WD40 184 ieehsliveaafspdGtalatasedGevkff 214
                 ++++s++    + +dG+ lat  +d +v  +
  CCE29782.1 396 VSHTSEVCGLEWRSDGAQLATGGNDNLVSIW 426
                 45567999999***************99887 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 7.3e-08
    Ge1_WD40 182 lkieeh.sliveaafspdGtalatasedGevkffqvyle 219
                 ++i  h s + ++ +spdG  lata++d  +kf++++ +
  CCE29782.1 524 VEIPAHeSRVLHSCLSPDGQMLATAAADESLKFWKIFEK 562
                 455555368***************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4309.34
//
Query:       CCE29783.1  [L=96]
Description: uncharacterized protein CPUR_03630 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-06   29.2   2.4        2.9    8.9   2.4    4.2  1  APC_rep         Adenomatous polyposis coli (APC) repeat
     0.0012   18.8   1.3        7.1    6.6   0.1    3.6  3  DUF4389         Domain of unknown function (DUF4389)
  ------ inclusion threshold ------
      0.023   14.8   3.9        1.5    9.0   0.6    2.2  2  CTNNBL          Catenin-beta-like, Arm-motif containing nucle
      0.024   15.3   8.9        3.5    8.4   3.6    2.8  2  PMC2NT          PMC2NT (NUC016) domain
      0.037   14.0  20.4        1.3    9.0   2.0    3.7  4  ApoB100_C       Apolipoprotein B100 C terminal
       0.12   11.9   3.3         20    4.6   2.9    3.0  1  CSS-motif       CSS motif domain associated with EAL
       0.12   12.4   0.6       0.32   11.0   0.6    1.6  1  Laminin_II      Laminin Domain II
       0.15   12.4   3.7          5    7.6   0.7    2.1  2  CENP-H          Centromere protein H (CENP-H)
       0.42    9.8   9.0        4.6    6.4   0.3    2.7  3  Lipoprotein_7   Adhesin lipoprotein
       0.64    9.5   4.9       0.72    9.4   4.9    1.0  1  Exonuc_VII_L    Exonuclease VII, large subunit
       0.64   10.7  13.4    2.1e+02    2.5  13.4    2.4  1  AATF-Che1       Apoptosis antagonizing transcription factor
        1.4    9.1   3.8         12    6.0   3.8    2.1  1  RRF_GI          Ribosome recycling factor
        3.1    8.0  10.4         11    6.2   0.8    2.8  3  TrmO_C          TrmO C-terminal domain
        3.3    7.5   6.4    2.1e+02    1.7   6.4    2.4  1  Synaptonemal_3  Synaptonemal complex central element protein 


Domain annotation for each model (and alignments):
>> APC_rep  Adenomatous polyposis coli (APC) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   2.4    0.0023       2.9      27      27 ..      50      50 ..       4      95 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0023
     APC_rep 27 t 27
                +
  CCE29783.1 50 Q 50
                2 PP

>> DUF4389  Domain of unknown function (DUF4389)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.025        32      43      63 ..      13      33 ..       5      34 .. 0.65
   2 ?    5.1   0.0     0.017        21      43      59 ..      34      50 ..      25      56 .. 0.54
   3 !    6.6   0.1    0.0055       7.1      44      55 ..      63      74 ..      46      93 .. 0.58

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.025
     DUF4389 43 nepLrdfgksllrYiarilrf 63
                +e+L++f+ +ll +  ++l+f
  CCE29783.1 13 SEQLLNFSEQLLNFSEQLLKF 33
                456667777777766666665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.017
     DUF4389 43 nepLrdfgksllrYiar 59
                +e+L++f+ +ll++  +
  CCE29783.1 34 SEQLLKFSEQLLKFSEQ 50
                34455555555555555 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0055
     DUF4389 44 epLrdfgksllr 55
                e+L++f+ +ll+
  CCE29783.1 63 EQLLNFSEQLLK 74
                333344444444 PP

>> CTNNBL  Catenin-beta-like, Arm-motif containing nuclear
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.6    0.0012       1.5      26      62 ..      21      57 ..       7      63 .. 0.68
   2 ?    7.9   0.4    0.0026       3.3      26      54 ..      63      91 ..      50      96 .] 0.69

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
      CTNNBL 26 klllklekkvkknqelRikyeddpekfmeSEadLdee 62
                ++ll++ +++ k++e+  k++++  kf e  ++ +e+
  CCE29783.1 21 EQLLNFSEQLLKFSEQLLKFSEQLLKFSEQLLNFSEQ 57
                5667777777777777777777777777665555555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0026
      CTNNBL 26 klllklekkvkknqelRikyeddpekfme 54
                ++ll++ +++ k++e+  k++++  kf e
  CCE29783.1 63 EQLLNFSEQLLKFSEQLLKFSEQLLKFSE 91
                56777777777777777777777777754 PP

>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.6    0.0027       3.5      15      45 ..      24      53 ..       5      68 .. 0.51
   2 ?    8.3   1.3    0.0028       3.6      15      45 ..      59      88 ..      52      96 .] 0.52

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0027
      PMC2NT 15 ldfyrsldpefaksldeqserllslinsllk 45
                l+f + l  +f+++l + se+ll+  ++ll+
  CCE29783.1 24 LNFSEQL-LKFSEQLLKFSEQLLKFSEQLLN 53
                3344444.44444444444444444444443 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0028
      PMC2NT 15 ldfyrsldpefaksldeqserllslinsllk 45
                l+f + l  +f+++l + se+ll+  ++llk
  CCE29783.1 59 LKFSEQL-LNFSEQLLKFSEQLLKFSEQLLK 88
                3444444.45555555555555555555555 PP

>> ApoB100_C  Apolipoprotein B100 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.3    0.0018       2.3       2      27 ..      12      37 ..       5      38 .. 0.73
   2 ?    4.9   6.4     0.019        25       3      27 ..      34      58 ..      26      67 .. 0.53
   3 ?    9.0   2.0     0.001       1.3       2      27 ..      47      72 ..      46      74 .. 0.88
   4 ?    7.7   3.3    0.0027       3.5       2      28 ..      61      87 ..      60      95 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0018
   ApoB100_C  2 fkakLqefsdqlsdyyEkliaeskrL 27
                f+++L +fs+ql+++ E+l+  s++L
  CCE29783.1 12 FSEQLLNFSEQLLNFSEQLLKFSEQL 37
                66777777777777777777766665 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.019
   ApoB100_C  3 kakLqefsdqlsdyyEkliaeskrL 27
                +++L  fs+ql+++ E+l++ s++L
  CCE29783.1 34 SEQLLKFSEQLLKFSEQLLNFSEQL 58
                4444444455555555444444444 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.001
   ApoB100_C  2 fkakLqefsdqlsdyyEkliaeskrL 27
                f+++L +fs+ql+++ E+l++ s++L
  CCE29783.1 47 FSEQLLNFSEQLLKFSEQLLNFSEQL 72
                7889999**********999999887 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0027
   ApoB100_C  2 fkakLqefsdqlsdyyEkliaeskrLi 28
                f+++L +fs+ql+++ E+l+  s++L 
  CCE29783.1 61 FSEQLLNFSEQLLKFSEQLLKFSEQLL 87
                788999999999999999999888886 PP

>> CSS-motif  CSS motif domain associated with EAL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   2.9     0.016        20       3       3 ..      49      49 ..       7      93 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.016
   CSS-motif  3 q 3 
                +
  CCE29783.1 49 E 49
                1 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6   0.00025      0.32      16      77 ..      13      74 ..       4      93 .. 0.48

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHH CS
  Laminin_II 16 leqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklke 77
                 eql + s++l n +e+l ++ +++ +  e++ ++++++   +++  k  +++ +  ++l +
  CCE29783.1 13 SEQLLNFSEQLLNFSEQLLKFSEQLLKFSEQLLKFSEQLLNFSEQLLKFSEQLLNFSEQLLK 74
                44444444445555555555555544444444444444444444444444444444444333 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.7    0.0039         5       6      45 ..      14      53 ..       5      64 .. 0.51
   2 ?    7.1   0.3    0.0053       6.8       6      42 ..      56      92 ..      51      96 .] 0.55

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0039
      CENP-H  6 eqrdelssellklsqelrelqeeltevekenlrlkrknre 45
                eq  + s++ll+ s++l +  e+l +  ++ l+ +++  +
  CCE29783.1 14 EQLLNFSEQLLNFSEQLLKFSEQLLKFSEQLLKFSEQLLN 53
                4445555555555555555555555555555554444333 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0053
      CENP-H  6 eqrdelssellklsqelrelqeeltevekenlrlkrk 42
                eq  + s++ll+ s++l +  e+l +  ++ l+ +++
  CCE29783.1 56 EQLLKFSEQLLNFSEQLLKFSEQLLKFSEQLLKFSEQ 92
                5555566666666666666666666666655555544 PP

>> Lipoprotein_7  Adhesin lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.3    0.0036       4.6     279     304 ..       9      34 ..       4      37 .. 0.84
   2 ?    5.2   1.0    0.0084        11     281     304 ..      39      62 ..      32      70 .. 0.61
   3 ?    5.2   2.0    0.0087        11     279     303 ..      58      82 ..      45      94 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0036
  Lipoprotein_7 279 akkfknelenladqllnksreidkfv 304
                      kf ++l n+++qlln s+++ kf 
     CCE29783.1   9 LLKFSEQLLNFSEQLLNFSEQLLKFS 34 
                    56899999999999999999998885 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0084
  Lipoprotein_7 281 kfknelenladqllnksreidkfv 304
                    kf ++l ++++qlln s+++ kf 
     CCE29783.1  39 KFSEQLLKFSEQLLNFSEQLLKFS 62 
                    566666666666666666665553 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0087
  Lipoprotein_7 279 akkfknelenladqllnksreidkf 303
                      kf ++l n+++qll+ s+++ kf
     CCE29783.1  58 LLKFSEQLLNFSEQLLKFSEQLLKF 82 
                    3344444444444444444444444 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.9   0.00056      0.72     145     221 ..      12      86 ..       4      96 .] 0.35

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00056
  Exonuc_VII_L 145 leeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl 221
                   + eql +++++l +  ++ll+ ++q l+ ++++l + +e+l + +++l +++e+l +  ++ lk +++ l+  + +l
    CCE29783.1  12 FSEQLLNFSEQLLNFSEQLLKFSEQLLK-FSEQLLKFSEQLLNFSEQLLKFSEQLLNFSEQLLKFSEQLLKFSE-QL 86 
                   4444444444444444444443333332.223333333333333333333344444422222222222222222.22 PP

>> AATF-Che1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5  13.4      0.16   2.1e+02      57      86 ..      25      55 ..       3      95 .. 0.34

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.16
   AATF-Che1 57 eaekalkklleslleLreelleqne.ikkla 86
                +++++l k+ e+ll++ e+ll+ +e + + +
  CCE29783.1 25 NFSEQLLKFSEQLLKFSEQLLKFSEqLLNFS 55
                2222222222222222222222222111111 PP

>> RRF_GI  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   3.8    0.0097        12      51      80 ..      36      67 ..       4      95 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0097
      RRF_GI 51 klqslleelkakeeesleylik..kietalle 80
                +l +++e+l + +e+ l++  +  k  ++ll+
  CCE29783.1 36 QLLKFSEQLLKFSEQLLNFSEQllKFSEQLLN 67
                23333333333333322222222233333333 PP

>> TrmO_C  TrmO C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.8    0.0089        11       7      34 ..      12      39 ..       6      47 .. 0.59
   2 ?    3.9   4.4     0.044        56       7      21 ..      47      61 ..      24      83 .. 0.53
   3 ?    5.4   1.2     0.015        19       7      34 ..      61      88 ..      58      96 .] 0.62

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0089
      TrmO_C  7 FseeaeaqlqqlqksapdlkqlIeevLa 34
                Fse+++++ +ql +  ++l ++ e++L+
  CCE29783.1 12 FSEQLLNFSEQLLNFSEQLLKFSEQLLK 39
                5666666666665555555555555554 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.044
      TrmO_C  7 Fseeaeaqlqqlqks 21
                Fse+++++ +ql k 
  CCE29783.1 47 FSEQLLNFSEQLLKF 61
                333333333333333 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.015
      TrmO_C  7 FseeaeaqlqqlqksapdlkqlIeevLa 34
                Fse+++++ +ql k  ++l ++ e++L+
  CCE29783.1 61 FSEQLLNFSEQLLKFSEQLLKFSEQLLK 88
                6666666666666666666666666664 PP

>> Synaptonemal_3  Synaptonemal complex central element protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   6.4      0.17   2.1e+02      35      35 ..      47      47 ..       6      95 .. 0.60

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.17
  Synaptonemal_3 35 v 35
                     
      CCE29783.1 47 F 47
                    2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 780.37
//
Query:       CCE29784.1  [L=457]
Description: related to transcription factor TFIIA-L [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-90  302.9  51.6    7.3e-55  187.6  30.7    2.1  2  TFIIA           Transcription factor IIA, alpha/beta subunit
  ------ inclusion threshold ------
        0.7   10.3   8.6        1.3    9.4   8.6    1.4  1  CENP-B_dimeris  Centromere protein B dimerisation domain
        1.9    6.7  33.3        2.8    6.1  33.3    1.4  1  PAT1            Topoisomerase II-associated protein PAT1
        6.6    5.8  15.4        7.7    5.6  15.4    1.2  1  SOG2            RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9  31.2   1.2e-37   5.3e-34       1     247 [.       9     232 ..       9     236 .. 0.68
   2 !  187.6  30.7   1.6e-58   7.3e-55     158     415 .]     208     457 .]     202     457 .] 0.65

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 1.2e-37
       TFIIA   1 vYrsvIedVIesvredFeeeGvdeqvLeeLkqlWesKllqskaaefpwdpkpeeaqspqfvlqlpqslkqalqasaaaasqapastsqslpslvipagk 99 
                 vY+ +I++VI+ +r+dFee+Gv+e+vLeeL+q+W++Kl+q+++a+fpwdpkpe +++++ +  ++++       saa + q p++++q  + ++  +g 
  CCE29784.1   9 VYQIIIDEVINTSRVDFEESGVEEHVLEELRQGWQQKLTQLDVARFPWDPKPEAPPPAPPAPRAASQ-------SAA-QAQFPPNQTQGYTGYTGHNG- 98 
                 8***************************************************996666554443322.......122.12233333444444444444. PP

       TFIIA 100 svqsltanssaataatfslpakleppvqipagvtlqtasgqlykvnv..qasgaqqiaaqplqqvvqqsqgsaaqssvaalqaq.sqqaqalaepqqql 195
                           ++++ ++++++k ep      g++   +     + n   ++s a+++aaq l+ +    +gs+a+ s++a+qa+ +++  +  +pq q+
  CCE29784.1  99 -------VRPEQGYVKNEVEIKHEP------GMQPLLPAIP--SFNAadKNSLAASRAAQRLADQ----YGSRAAGSISAIQAGhKPHPPQGQQPQGQQ 178
                 .......44458999**********......7776666644..3344449999999999999999....***************877766666666665 PP

       TFIIA 196 ekqqqqqqqqqqqqqqqqvqqqqqeesqqaqqa..sqeqvagsqvessqtdgae 247
                  ++qq+q qq+q q++q ++ q q++ q +qq+  +q+ ++++q++ +q +g++
  CCE29784.1 179 PQGQQPQGQQPQGQHPQGQHPQGQQQLQGQQQPqgQQQLQSQQQPQGQQPQGQQ 232
                 566777888888888884444444433333333213332222444444444443 PP

  == domain 2  score: 187.6 bits;  conditional E-value: 1.6e-58
       TFIIA 158 plqqvvqq.....sqgsaaqssvaalqaqsqqaqalaepqqqlekqqqqqqqqqqqqqqq.qvqqqqqeesqqaqqasqe.qvag.sqvessqtdgaed 248
                 ++q + qq     +q++ +q + +++q+q qq+q++ +pq q    qq+q qq++ qq+q q+ q+qq + qq+q ++ + +  g s++++ qtdg+ d
  CCE29784.1 208 QQQPQGQQqlqsqQQPQGQQPQGQQPQGQ-QQLQGQQQPQGQ----QQPQGQQPEGQQPQsQQPQSQQPQGQQPQGPQGQaNGGGaSSLSNGQTDGPGD 301
                 11111111000112333333333333332.223333333222....33456666666655344444433444444443334455568999********8 PP

       TFIIA 249 aleeespvlegelsaeeeagaqkeelsreeidri.re.............ealkakelekeskkkkraeessladlseilqlDGagddsdeeeeeeesd 333
                 a ee    +eg l++++++g+  +el r++idr+ +               +l  k  e++s++++ +++++ a+ + i+ +DGa++d+d         
  CCE29784.1 302 AVEE---DYEGILMQRSAEGT-LHELARVDIDRLlHGqiaarakamegggLMLPLK--EAASRAAP-SAARTRAKGKAIAGYDGADEDEDI-------- 385
                 8887...57999999999999.589999******7767888887777776333322..22222222.22234447889******9999888........ PP

       TFIIA 334 edsdsessddedeqveEDplNSd.DDvddeddddlfdtdn....vivCqYDKvhRsKNKWKftLKDGvmtvnGkdYVFsKAiGeaEW 415
                   +            +ED++NSd DD++d++d+d + +d+    +++C+YDKv+R+KNKWK+tLKDGv+tvnGk+YVF+KA+Ge+EW
  CCE29784.1 386 --D------------DEDAINSDlDDPEDDNDED-EVDDEglghIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 457
                 ..3............49*****************.777778********************************************** PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   8.6    0.0003       1.3      13      51 ..     379     417 ..     371     433 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0003
  CENP-B_dimeris  13 esesdeeeeeeee.deededeeddedddevpvpsfgeama 51 
                       + de+ ++e+  + + +d edd+d+dev    +g  m 
      CCE29784.1 379 A-DEDEDIDDEDAiNSDLDDPEDDNDEDEVDDEGLGHIML 417
                     2.33333333333033446778999999999999998874 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  33.3   0.00061       2.8     207     334 ..     167     272 ..      31     313 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00061
        PAT1 207 qakkkaaqaaaaaaasqqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqskqakpaepsasseaqeakqqap 305
                 + ++ ++++ ++  + qqP+ +q + ++ +                  q+ + +q+ q qq+++ +++++  q+pq +q++ ++p+ +++ q   qq+p
  CCE29784.1 167 HPPQGQQPQGQQ-PQGQQPQGQQPQGQHPQ-----------------GQHPQGQQQLQGQQQPQGQQQLQSQQQPQGQQPQGQQPQGQQQLQ--GQQQP 245
                 221111111111.11122222222221111.................111222222222222222233333333333333333333322222..22222 PP

        PAT1 306 pakvqptqilqnpnrlaarlelsqkeqaa 334
                 + ++qp+   q+p+ ++ + +++q++q++
  CCE29784.1 246 QGQQQPQG--QQPEGQQPQSQQPQSQQPQ 272
                 22223332..2222221111111111111 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  15.4    0.0017       7.7     197     342 ..     133     273 ..      35     364 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0017
        SOG2 197 sstesrassvtytart...RhagsfsaqdveqGaaltplrsdqipfnlsrsrrssssgnsaspaangaqsetsersasssgvqssasstPlgegstspp 292
                 +++   +++ + +a++   R ags s   ++ G +  p + +q++     ++ +++++++ +p+ + +q + ++ +++ +g q+++ ++ l+++++  p
  CCE29784.1 133 KNSLAASRAAQRLADQygsRAAGSIS--AIQAGHKPHPPQGQQPQG----QQPQGQQPQGQQPQGQHPQGQHPQGQQQLQGQQQPQGQQQLQSQQQ--P 223
                 22222222222222325557788777..466666666434444444....3333444444444444444444443333333222222212222222..1 PP

        SOG2 293 .galsrqslsttgststltsssksrsssrsnt..nasastprslattpappas 342
                  g++++ +  +++ +++l+ +++ ++ ++ ++  +++  +p+s++ ++++p  
  CCE29784.1 224 qGQQPQGQ--QPQGQQQLQGQQQPQG-QQQPQgqQPEGQQPQSQQPQSQQPQG 273
                 12222221..2222222222222222.11111223444444444433332221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1156  (0.0644765); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 2945.42
//
Query:       CCE29785.1  [L=297]
Description: uncharacterized protein CPUR_03632 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-13   48.4   0.0    1.1e-12   48.1   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    0.00063   20.4   0.0     0.0013   19.4   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.033   14.0   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
      0.028   14.6   0.0      0.035   14.2   0.0    1.4  1  FtsJ             FtsJ-like methyltransferase
      0.033   13.5   0.0      0.064   12.6   0.0    1.4  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   3.1e-16   1.1e-12      21     141 ..      64     200 ..      26     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 3.1e-16
  Methyltransf_23  21 raggrvLdiGcGtGil....levlre..ngfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp..dppellrqia 106
                       ++ r++d+G+GtGi+    +ev+++   ++++t+vD++ ++ ++++++ +         ++a+ q+ ++lI++r++ ++v+  ++ +  r++ 
       CCE29785.1  64 TQPLRIIDLGTGTGIWafdvSEVAEKtdSPVEITAVDMNMIQPSRIPSDVTVLRLDIEHPSWAPLQRDCNLIHMRQLNGSVRpiHWLAIYRNAL 157
                      45669***********666555553322467***************977777777777777*********************666********* PP

  Methyltransf_23 107 tllkpgGylllse..plasl....kedrllldwlylvpag..r 141
                      ++lkpgG +++ e  ++ ++    + d++l++w  ++ +g  +
       CCE29785.1 158 QHLKPGGFIEHAEmdWATRWagpaPKDSALEKWSQAFRRGmfT 200
                      ************9554444488767999999997776665553 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.6e-07    0.0013       1      97 []      69     164 ..      69     164 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.6e-07
                      EEEET-TTSHHHHHHHCTS....TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG..BSSSTTTEEEEEEESTGGG.SSHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl....gkakvtgvDiseemleaareraeeeglnvefvqgdaed..lpfedgsfDlvvssgalhh.lsdedlekalk 87 
                      ++dlG+GtG +++++++      +  ++t+vD++  m++  r        +v++++ d+e+  +   ++ ++l+++++ l+  + + ++ ++++
       CCE29785.1  69 IIDLGTGTGIWAFDVSEVAektdSPVEITAVDMN--MIQPSRIPS-----DVTVLRLDIEHpsWAPLQRDCNLIHMRQ-LNGsVRPIHWLAIYR 154
                      79**********9988776543337888888876..555433333.....7899999998844445566788888854.554499999****** PP

                      HHHHHEEEEE CS
  Methyltransf_25  88 eiarvLkpgG 97 
                      ++ ++LkpgG
       CCE29785.1 155 NALQHLKPGG 164
                      *********9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   9.1e-06     0.033       4     114 ..      66     173 ..      64     220 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.1e-06
  Methyltransf_31   4 glrvlDlGCGtGeltfelae...elgpkaevvGiDiseeaielArenaqklgldnveFeqgdieelekl.ledekfDlilsnevlnaladpd.. 91 
                       lr++DlG+GtG  +f   e   +  +  e++ +D++  +i+ +r        + v++ + die+ + + l+ +  +li+ +  ln    p   
       CCE29785.1  66 PLRIIDLGTGTGIWAFDVSEvaeKTDSPVEITAVDMN--MIQPSRI------PSDVTVLRLDIEHPSWApLQ-RDCNLIHMR-QLNGSVRPIhw 149
                      589*********999998866545556788*****96..7888888......45688888888876634444.566666664.44454444311 PP

  Methyltransf_31  92 .kileeiervlkpggilliedprl 114
                       +i++++ + lkpgg +  +++++
       CCE29785.1 150 lAIYRNALQHLKPGGFIEHAEMDW 173
                      156667777777777776666664 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   9.8e-06     0.035      23      80 ..      67     130 ..      35     243 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.8e-06
                 -EEEECT-TTSHHHHHHCCT.T....-SEEEEEESSSSHHH...TTEEEECS-CCCSSHHHHHC CS
        FtsJ  23 ktvvDlgaaPGgwsqvllqrlga...kgkvvavDlqpmapl...pgvttiqgditdpetiekik 80 
                  +++Dlg ++G w+  +++  ++      + avD++ ++p    + vt+++ di +p+ +++ +
  CCE29785.1  67 LRIIDLGTGTGIWAFDVSEVAEKtdsPVEITAVDMNMIQPSripSDVTVLRLDIEHPSWAPLQR 130
                 459**********8666555433322599*********77666899***********9887555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.8e-05     0.064      45      85 ..      63     104 ..      59     117 .. 0.81
   2 ?   -4.1   0.0       2.3   8.2e+03     137     150 ..     154     167 ..     150     173 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.8e-05
                      S--TTEEEEES-TT-HHHHHHHHHHHHHH...EEEEEES-HHHH CS
  Ubie_methyltran  45 vkrgakvlDvagGtgDlafklsdsvgekg...kvvvlDinenmL 85 
                      + ++ +++D+ +Gtg +af++s+ ++++    +++ +D+  nm+
       CCE29785.1  63 GTQPLRIIDLGTGTGIWAFDVSEVAEKTDspvEITAVDM--NMI 104
                      567889******************999876445555555..454 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.3
                      HHHHHHEEEEEEEE CS
  Ubie_methyltran 137 keayrvlkpGGrlv 150
                      ++a + lkpGG + 
       CCE29785.1 154 RNALQHLKPGGFIE 167
                      66777899999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2209.13
//
Query:       CCE29786.1  [L=189]
Description: related to F1F0-ATP synthase subunit G [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-28   99.1   0.0    3.4e-28   98.4   0.0    1.3  1  ATP-synt_G  Mitochondrial ATP synthase g subunit


Domain annotation for each model (and alignments):
>> ATP-synt_G  Mitochondrial ATP synthase g subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.0   1.9e-32   3.4e-28       2     100 .]      74     182 ..      73     182 .. 0.89

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 1.9e-32
  ATP-synt_G   2 kveslvpkavyyskvglelskqvakkeklapPtvaefqslykqllktalasps..........kpqellerlknlkkeeallagvvaaevlgfFsvGEi 90 
                 ++e+++p +vyyskv++e++k+++++++++ P+++ fq++y+ l+++al+ +            ++e+le+ ++  k+++++ +v++++++gfF+vGE+
  CCE29786.1  74 FIERQTPFVVYYSKVTAEVAKTIYHGQRMSLPSISAFQAVYRGLWRSALNRTLfpsprtllqnAREEVLEHGTEPLKARLATGTVIGLQCVGFFTVGEM 172
                 899********************************************88865577555666555556666677999*********************** PP

  ATP-synt_G  91 IGRrklvGYk 100
                 +GR+klvGY+
  CCE29786.1 173 LGRFKLVGYH 182
                 *********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1467.83
//
Query:       CCE29787.1  [L=376]
Description: probable L-arabinitol 4-dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-27   94.3   2.1    7.8e-27   93.3   2.1    1.5  1  ADH_N        Alcohol dehydrogenase GroES-like domain
    1.1e-14   54.5   0.0    1.7e-14   53.9   0.0    1.3  1  ADH_zinc_N   Zinc-binding dehydrogenase
    0.00026   20.6   0.3       0.04   13.4   0.2    2.6  2  Glu_dehyd_C  Glucose dehydrogenase C-terminus


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   2.1   1.3e-30   7.8e-27       1     109 []      53     164 ..      53     164 .. 0.97

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 1.3e-30
                 TTEEEEEEEEEEE-HHHHHHHTTS..TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTS.S-SSSB CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkgg..kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvs.ldGgfa 96 
                 pgev+i ++++giCgsD+h+++ g    + v  + ilGHE +G v +v p+v++l+vGdrV+vep++ c+ C+ C +g++n Ce+ ++l++  +dG + 
  CCE29787.1  53 PGEVTIAIRSTGICGSDVHFWHAGciGPMVVTGDHILGHESAGDVIAVHPSVTDLQVGDRVAVEPNVICNACEPCLTGRYNGCEKVQFLSTPpVDGLLR 151
                 689*******************99999999999**********************************************************99****** PP

                 SEEEECGGGEEEE CS
       ADH_N  97 eyvvvpekklvkl 109
                 +yv  p+  ++k+
  CCE29787.1 152 RYVNHPAVWCHKI 164
                 ******9999875 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   2.8e-18   1.7e-14       1     129 [.     203     334 ..     203     335 .. 0.91

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 2.8e-18
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEET....TTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSS CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadeviny....kea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkg 93 
                 ++Gl+ + +++a Ga   + +d+se++l++ak+l + +vi++     +a d  ++i e +gg  + + +ec+G++++++aa+ ++k gG+++++G+g +
  CCE29787.1 203 PIGLISLLCCAAGGAsPLVITDISESRLAFAKEL-CPRVITHkierGSAeDTAKAIVESFGGIEPALTMECTGVESSINAAIWATKFGGKVFIIGVGRN 300
                 79*************66666**************.4555555566677779************************************************ PP

                 EEEEEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  94 eeefdlrnlllkeksilGsllgslreefkealdlla 129
                 e  + +++   +e+ i+   ++   +++++a++l++
  CCE29787.1 301 EINIAFMRASVREVDIQLQYRYC--NTWPRAIRLVE 334
                 *****************999999..9*****99986 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.2   6.8e-06      0.04       4     135 ..     172     300 ..     169     318 .. 0.64
   2 !    4.3   0.0    0.0042        25     182     204 ..     340     362 ..     322     373 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.8e-06
  Glu_dehyd_C   4 gvLvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlg.rrdrpdptidlveelGatYvd..sretpvdeipeas 98 
                  g ++EP+s++  +++ a+          + +l+ GaG++GL++l   +a   g + + +++  ++r   + +l  ++ +  ++  s+e++ + i e  
   CCE29787.1 172 GSMLEPLSVALAGMQRAKMQ------LGDPVLICGAGPIGLISLLCCAA--GGASPLVITDiSESRLAFAKELCPRVITHKIErgSAEDTAKAIVESF 261
                  66778888876666554432......24679************877775..56665656553333444444455444444433223334444444433 PP

  Glu_dehyd_C  99 e..emdlvvEaTGsakhafeaiealapnGvaaLlGvped 135
                     e+ l +E+TG    + +ai a +  G + ++Gv  +
   CCE29787.1 262 GgiEPALTMECTGVESSINAAIWATKFGGKVFIIGVGRN 300
                  211567899999999999999999999999999999765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0042
  Glu_dehyd_C 182 ldelvtkvvdldeleeAfeddde 204
                  +++lvt++ +l+++ +Afe++ +
   CCE29787.1 340 MSRLVTHRFKLEDAVKAFETSAD 362
                  679***************96554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2831.61
//
Query:       CCE29788.1  [L=62]
Description: uncharacterized protein CPUR_03635 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 474.67
//
Query:       CCE29789.1  [L=1249]
Description: related to WD repeat protein WDR6 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-18   65.7   2.8    4.6e-05   24.1   0.0    9.2 10  WD40           WD domain, G-beta repeat
  ------ inclusion threshold ------
        0.1   11.3   0.0        7.5    5.2   0.0    3.1  3  Nucleoporin_N  Nup133 N terminal like


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2   1.1e+04      12      34 ..      34      58 ..      28      61 .. 0.58
   2 !   24.1   0.0   5.2e-09   4.6e-05       6      38 .]     221     262 ..     219     262 .. 0.84
   3 ?   -1.9   0.0      0.87   7.8e+03       9      18 ..     323     333 ..     316     339 .. 0.72
   4 ?    1.6   0.5     0.066   5.9e+02       4      34 ..     385     420 ..     382     421 .. 0.72
   5 ?   -0.7   0.0      0.35   3.1e+03      18      37 ..     685     704 ..     661     705 .. 0.77
   6 !   16.2   0.0   1.6e-06     0.014       9      37 ..     820     847 ..     810     848 .. 0.82
   7 ?   -1.1   0.0      0.46   4.2e+03       4      31 ..     896     923 ..     893     930 .. 0.66
   8 ?    1.1   0.0     0.098   8.8e+02      25      37 ..    1050    1062 ..    1016    1062 .. 0.77
   9 !    5.2   0.0    0.0047        42       9      32 ..    1085    1111 ..    1079    1113 .. 0.84
  10 !    4.4   0.0    0.0088        79       9      37 ..    1144    1185 ..    1138    1186 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                SEEEEE...EETTSSEEEEEETTSEE CS
        WD40 12 svtsla...fspdgawlasGsdDgtv 34
                ++ts+a   +++  +++++G  Dg +
  CCE29789.1 34 PITSVAfftTPSGTRYFLAGQ-DGEL 58
                589997664333333355444.7755 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 5.2e-09
                 EEESS.SSEEEEE.....EETTSSE...EEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtsla.....fspdgaw...lasGsdDgtvriWd 38 
                 +l+GH +s+++++     + +dg+    las+sdD+t+riWd
  CCE29789.1 221 VLRGHeGSIYGVDvsaplVLRDGTRrrlLASCSDDRTIRIWD 262
                 699**999**99877777666666699899***********9 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.87
                 SS.SSEEEEEE CS
        WD40   9 GH.ssvtslaf 18 
                 GH s +++++f
  CCE29789.1 323 GHaSRIWGVRF 333
                 9*777999965 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.066
                 EEEEE.SS.SSE..EEEEEETTSSE.EEEEETTSEE CS
        WD40   4 lrtlt.GH.ssv..tslafspdgaw.lasGsdDgtv 34 
                 ++t+   H +++  ++l+++  g   +++G+ Dg++
  CCE29789.1 385 QHTYAlHHgKHIwaRALDVHAQGGVdILTGGADGKI 420
                 67776345777855688777777778789999**98 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 0.35
                 EETTSSEEEEEETTSEEEEE CS
        WD40  18 fspdgawlasGsdDgtvriW 37 
                 +sp+ +++++ s+D + ri+
  CCE29789.1 685 TSPSCPYILTTSRDSKYRIY 704
                 79999***999999887776 PP

  == domain 6  score: 16.2 bits;  conditional E-value: 1.6e-06
                 SSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GHss.vtslafspdgawlasGsdDgtvriW 37 
                 +H+  v++l  s +++++asG +D ++riW
  CCE29789.1 820 THGReVRAL--SANKRFVASGAEDTSIRIW 847
                 673359999..******************* PP

  == domain 7  score: -1.1 bits;  conditional E-value: 0.46
                 EEEEESSSSEEEEE...EETTSSEEEEEETT CS
        WD40   4 lrtltGHssvtsla...fspdgawlasGsdD 31 
                 +  +++H  vt+l+   +  d  +++s++ +
  CCE29789.1 896 MACIKAH--VTGLQklrWFEDEYLFSSAG-N 923
                 5567899..77776666888877777766.5 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.098
                  EEEEETTSEEEEE CS
        WD40   25 lasGsdDgtvriW 37  
                  ++++s Dg++ +W
  CCE29789.1 1050 VLTASTDGHLALW 1062
                  456777****999 PP

  == domain 9  score: 5.2 bits;  conditional E-value: 0.0047
                  SS.SSEEEEEEETTSSE..EEEEETTS CS
        WD40    9 GH.ssvtslafspdgaw..lasGsdDg 32  
                   H ss+ sl+ s+dg    +++G+dD+
  CCE29789.1 1085 VHqSSIKSLDMSRDGIQirVVTGGDDN 1111
                  69889************6659***886 PP

  == domain 10  score: 4.4 bits;  conditional E-value: 0.0088
                  SS.SSEEEEE............EETTSSEEEEEETTSEEEEE CS
        WD40    9 GH.ssvtsla............fspdgawlasGsdDgtvriW 37  
                  +H   v+++a              p+ ++ +s s D+ v++W
  CCE29789.1 1144 AHtAAVNGVAllpavhhrrqldQGPEETLAVSVSNDQRVKVW 1185
                  77555888877777555555556666666777799******* PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0   0.00084       7.5     211     239 ..     244     272 ..     238     301 .. 0.78
   2 ?   -1.6   0.0     0.093   8.4e+02     138     177 ..     680     722 ..     652     748 .. 0.73
   3 ?    1.8   0.0    0.0086        77      93     234 ..    1049    1191 ..    1041    1209 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.00084
                    CCTCEEEEEETTSEEEEEEEETTCEE-EE CS
  Nucleoporin_N 211 ssrrilytlsskgvirvydlsasngessl 239
                      rr+l + s +++ir++d+s +++e   
     CCE29789.1 244 TRRRLLASCSDDRTIRIWDISLDGDEAAV 272
                    456******************88776554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.093
                    EEEEEETTTC-EEEEETTS...SEEEEEEC-SSS-CEEEEEEE CS
  Nucleoporin_N 138 tqvinseptgriflagstg...rlyeltyrdssgwpslkckki 177
                     q+++  p++ ++l++s +   r+y+++ ++   + + +++ i
     CCE29789.1 680 HQLTTTSPSCPYILTTSRDskyRIYHIDHTPHPPHSTPSLTLI 722
                    6777888888888888888888888887766655555555555 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.0086
                     EEEEECTTSEEEEECECCS--------EEEEEEEE--EETT.TTEEEEEEETTTC-EEEEETTSSEEEEEEC-SSS-CEEEEEEEEE-SSSS-. CS
  Nucleoporin_N   93 llLvvattgeivyweviysaasllstnelslfntdlsvssdgeivtqvinseptgriflagstgrlyeltyrdssgwpslkckkicltkgglss 186 
                     ++L  +t g +++w+  y ++++  t  +  ++  + v+ +  +  ++   + + r++ +g ++ l ++++   ++ ++      + ++g++s 
     CCE29789.1 1049 HVLTASTDGHLALWGGAYLDGEA-GTTHRYALEAAYAVHQSSIKSLDMSRDGIQIRVVTGGDDNALGYVQIAEMQSETGTER---RTSYGFVS- 1137
                     67777777777777777777776.6677777777777777766666666666666777777777777777777777644443...35666666. PP

                     ..--SSS--G----GG-EEEEEEECCT.........CEEEEEETTSEEEEEEEETTC CS
  Nucleoporin_N  187 llsilpgvlsgasereeivqlridssr.........rilytlsskgvirvydlsasn 234 
                        i++++++   + + ++ l + + r          + +++s++ +++v+++sa +
     CCE29789.1 1138 -RAIIRKAHT--AAVNGVALLPAVHHRrqldqgpeeTLAVSVSNDQRVKVWRISAHE 1191
                     .466666666..555555555555555556666665999**************9543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:01.07
# Mc/sec: 3520.67
//
Query:       CCE29790.1  [L=328]
Description: uncharacterized protein CPUR_03637 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-35  122.2   8.5    2.9e-35  121.8   8.5    1.1  1  SUR7      SUR7/PalI family
     0.0046   16.9  10.1     0.0096   15.9  10.1    1.5  1  Fig1      Ca2+ regulator and membrane fusion protein Fig1
  ------ inclusion threshold ------
       0.16   12.3   0.6        2.6    8.4   0.0    2.4  2  Comm      Commissureless
        3.8    6.9  10.1       0.27   10.7   4.4    2.0  2  Clc-like  Clc-like


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   8.5   6.5e-39   2.9e-35       3     212 .]      10     243 ..       8     243 .. 0.93

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 6.5e-39
        SUR7   3 lillflslaalilllfailgsiknstpltsiylskfdlsgldlaqi..........................gladvysfgvwgyCdnsdvnytkCskp 75 
                  ++l l++a++i ll+a l+++      +++ ++++d+ +l+ + +                          +lad+y++ +wgyC+++++++++C+k+
  CCE29790.1  10 GLPLALTIASIIALLIATLSGV----AHNQLWMFQLDTRNLSISPVdaahlagkaglslrdlktdnitaadlNLADTYDVNLWGYCSTTHDGQRQCTKA 104
                 57999***************99....666777788888866666668888899999******************************************* PP

        SUR7  76 kagypfdp....l.eelnsesngkvdlPsnlrktlsklnnltkalfilhiialvlsfislvvgllaicvspdnsrllsflnlllsvlsflatllaalld 169
                 ++++ +++    + e lns+++ k+ lP +++ +l +++++tk+  + +iialv+ ++ lvvg++a+c     sr++s+l++lls ++ +++ +aa+++
  CCE29790.1 105 SFDWAATAlnasViETLNSTTGLKIELPHEMEAALRTFRTVTKWTEVAFIIALVALALQLVVGIFAMC-----SRAVSCLTWLLSGVTGILVGVAAGMA 198
                 ****9996455526******************************************************.....999*********************** PP

        SUR7 170 tllfvfvrkkin..lkefgikaslglkflafaWlalaaallvvif 212
                 t++ ++v ++++  +k +g++ ++g +fla++W+a+ +a+++ +f
  CCE29790.1 199 TAMATVVIGAVEssAKYYGVEGHVGGRFLATVWIAALFAIVSGLF 243
                 ****************************************99876 PP

>> Fig1  Ca2+ regulator and membrane fusion protein Fig1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9  10.1   2.1e-06    0.0096      23     184 ..      89     246 ..      85     250 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.1e-06
        Fig1  23 GvCvdkspksliCrkksnatelasllslsssssskstsd.plnl.velakkfsdnvvhpyllmvaiiLtlllfllllyfplgseipllPfkskavskva 119
                 G C ++ +++++C +k +++  a++l++s +++ +st+  +++l  e+  +++    + +   va+i++l+ + l l+      + ++++ s+avs ++
  CCE29790.1  89 GYCSTTHDGQRQC-TKASFDWAATALNASVIETLNSTTGlKIELpHEMEAALRTFRTVTKWTEVAFIIALVALALQLV------VGIFAMCSRAVSCLT 180
                 88999999999**.7777888888888777777777777777773234444443333334455555555555555544......559************ PP

        Fig1 120 lvlsflllllwlvga.lwqhvassaastlveeasmgivkskvGkkaealgWfafaflllvclglwv 184
                  +ls ++ +l++v+a + +  a++ + ++  +a++  v+++vG++  a  W+a  f++++ l  ++
  CCE29790.1 181 WLLSGVTGILVGVAAgMATAMATVVIGAVESSAKYYGVEGHVGGRFLATVWIAALFAIVSGLFWIF 246
                 *******99999887699999999*****************************9999887665444 PP

>> Comm  Commissureless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.5       0.2   8.8e+02      13      29 ..     157     173 ..     146     182 .. 0.74
   2 ?    8.4   0.0   0.00058       2.6       5      57 ..     225     280 ..     224     308 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.2
        Comm  13 givltLlilslvFclcs 29 
                  ++l L ++  +F +cs
  CCE29790.1 157 LVALALQLVVGIFAMCS 173
                 45678888999*****9 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00058
        Comm   5 riindvwigivltLli.lslvFclcsCflyrkfrtWkkkkt..ardakstranssd 57 
                 r++++vwi++ + ++  l+ +F +c C   r+ ++ k++    ++++ +++  s++
  CCE29790.1 225 RFLATVWIAALFAIVSgLFWIFTVCCCKPERRQKRCKNADGekLLPTGAYKPISGH 280
                 68899****99988755999999999988777776665432225555555555555 PP

>> Clc-like  Clc-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3       0.4   1.8e+03     188     203 ..      14      29 ..       6      35 .. 0.63
   2 ?   10.7   4.4   6.1e-05      0.27      43     159 ..      87     201 ..      73     250 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.4
    Clc-like 188 agalislvalllavlv 203
                 a ++ s++all+a l+
  CCE29790.1  14 ALTIASIIALLIATLS 29 
                 4455566666666554 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 6.1e-05
    Clc-like  43 LWldCtraekhvvksqdvdegplhCvY.kFdidallvyseklevid..........edsavgelethkFygWhkavlilllislllaalsllsgicasv 130
                 LW +C ++          ++g+ +C+   Fd  a+      +e+ +          +     e     F +  k + +  +i+l+  al l++gi+a++
  CCE29790.1  87 LWGYCSTT----------HDGQRQCTKaSFDWAATALNASVIETLNsttglkielpH---EMEAALRTFRTVTKWTEVAFIIALVALALQLVVGIFAMC 172
                 56666533..........346667764246666655444444444433355553322...3333333444444444455566777778999******** PP

    Clc-like 131 ssseailftillvlaallalvadiiFfva 159
                 s++ + l  +l  ++ +l  va ++    
  CCE29790.1 173 SRAVSCLTWLLSGVTGILVGVAAGMATAM 201
                 *****877777777777777776654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1219  (0.0679904); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2317.64
//
Query:       CCE29791.1  [L=542]
Description: probable serine/threonine protein phosphatase-z-like [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-34  119.2   0.1      5e-34  118.6   0.1    1.3  1  Metallophos  Calcineurin-like phosphoesterase
    4.1e-16   59.1   0.0    7.8e-16   58.3   0.0    1.5  1  STPPase_N    Serine-threonine protein phosphatase N-terminal 
  ------ inclusion threshold ------
      0.099   11.8  10.1       0.13   11.5  10.1    1.1  1  SOG2         RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.1   8.4e-38     5e-34       2     201 ..     268     459 ..     267     462 .. 0.92

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 8.4e-38
                  EEEEEESBTBTTCCTHHHHHHHHHHHH.HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl.lreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygylg 89 
                  ++ ++gD+H     gq+ d++++++ +  ++  ++l+l  GD+vdrg  + e++ l l+++vk+p++++ll+GNHe        gf++e++++     
   CCE29791.1 268 PVKIVGDVH-----GQYTDVIRMFEMCgFPPMSNYLFL--GDYVDRGKQSLETILLlLCYKVKFPDNFFLLRGNHEcanvtrvyGFYDECKRRCN--- 355
                  5789*****.....************963345789999..*******6666666666************************************88... PP

                  HHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHH CS
  Metallophos  90 ifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgdea 183
                     ++w+++ ++fn lp+a+++ g  k++++hGg sp l  + d+++++ +++++p+ g   d++++d       + ++   +  ++rg +y fg ++
   CCE29791.1 356 --VKIWKTFIDCFNTLPIAAIVAG--KIFCVHGGlSPAL-SHMDDIRNIARPTDVPDYGllnDLLWAD-------PADMEQDWEANERGVSYCFGKRV 441
                  ..99********************..********76666.*****************99999999999.......999999999999*********** PP

                  HHHHHHHTTESEEEEESS CS
  Metallophos 184 ledllkkygvdlvisGHt 201
                  + ++l  ++ dl++++H 
   CCE29791.1 442 ITEFLAVHDFDLICRAHM 459
                  *****************7 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   1.3e-19   7.8e-16       1      47 [.     218     265 ..     218     266 .. 0.91

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 1.3e-19
   STPPase_N   1 vDdiIerLlevrg.kpggkkvqLseaEIrqlCakareiFLsQPtLLeL 47 
                 +Dd+I+rLl++++  +  k v+L++aEI ++C++are++LsQP LLeL
  CCE29791.1 218 LDDYIKRLLDAGYaGKVTKSVCLKNAEIVAICQRAREVLLSQPALLEL 265
                 7************644447888*************************9 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  10.1   2.1e-05      0.13     182     331 ..      21     192 ..       3     278 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.1e-05
        SOG2 182 ttssgssstlvssaesstesrassvtytartRhagsfsaqdveqGaaltplrsd.qipfnl......srsrrssssgnsaspaangaqsetsersasss 273
                  + +  +s + s++++s++s  s + +++ + ++ s ++  + +++ l++ +s+ + ++ +       + r+++s++ns s  ++ ++++t+ +s +++
  CCE29791.1  21 DALQAYPSISRSDTKESSRSLRSFRSKIPGSNSSKSLNTDSPRNSTLLANGESSgDKTLDAgsvrsgRSGRSNGSNRNSRSETPHLRHNSTDMSSMTDD 119
                 33444455555666666666666666666655555555555555666665555555555558999987788899999999999999999999999**99 PP

        SOG2 274 g.vqssasstPlgegstsp...p.galsrqslsttgststltsssksrs..............ssrsntnasastpr 331
                 g  + +++++P+  +s +      +a++++  +++ s++++t s+ s                 s     ++++  +
  CCE29791.1 120 GnYDEQPPPSPGLPASAKGaahDvSAAQASGEVDHVSDQPPTASNASATahmqspgasilvkrDS----EVNNVVAS 192
                 99999999999888877773332233344444445555555555555443333333322221111....12222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4062.98
//
Query:       CCE29792.1  [L=406]
Description: uncharacterized protein CPUR_03639 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1277  (0.0712254); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3088.69
//
Query:       CCE29793.1  [L=287]
Description: uncharacterized protein CPUR_03640 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-31  109.4   2.5    2.7e-31  108.7   2.5    1.3  1  RRF       Ribosome recycling factor
  ------ inclusion threshold ------
       0.32   11.7  10.5          2    9.2   6.0    2.9  3  YppG      YppG-like protein
        1.7    8.6   4.0         33    4.4   0.7    2.6  2  TMIE      TMIE protein


Domain annotation for each model (and alignments):
>> RRF  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   2.5   4.5e-35   2.7e-31       1     160 [.     110     284 ..     110     285 .. 0.88

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 4.5e-35
                 HHHHHHHSS-S.SSSCGGGTTSEEEETTE...........EEEGGGTEEEEESSTTEEEEEESSCCHHHHHHHHHHH.SCC-SEEE.EESSEEEEE--S CS
         RRF   1 lkkelsklrtg.ranpslldnikVeyygk...........ktpLnqlAqvsvkeartllitpfdkslvkaiekaIlk.sdlglnpq.qdgevlrvpipp 85 
                 +k +l+++ +g r+np+ l  ++V+ + +           ++pL++lAqv+++++rt+++ + d++++k+i++a+++ +d++++pq ++++ l + + +
  CCE29793.1 110 FKAQLQTVLHGgRFNPDNLGALPVTVKPSeeangahktttTFPLRELAQVVPRSGRTISLLVNDREYIKPIMSAVQAsKDYNQQPQrSEDNDLELLM-K 207
                 689999999999************5444467788898887899**********************************899*****954666555544.3 PP

                 SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         RRF  86 lTeErrkelvkeakkaaekakvairniRrdankklkklekk..iseDdvkkaekeiqkltdkyikeidellkakeke 160
                 +  Er+++l++++k++a+ +k++ir+ R+++ k lk ++kk  + +D ++kaeke+qk+ d+++kei +   ++ k+
  CCE29793.1 208 VELERKDDLIRRVKEVAQGWKEKIRQGRSRHDKVLKGWAKKgtVLKDVAHKAEKELQKVLDEKMKEIAAEEVQALKQ 284
                 355*************************************668889*********************9887777666 PP

>> YppG  YppG-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.0   0.00034         2      46      72 ..      26      52 ..      14      64 .. 0.83
   2 ?    3.2   0.1     0.025   1.5e+02      46      75 ..      81     110 ..      52     116 .. 0.69
   3 ?   -0.2   0.0      0.27   1.6e+03      29      52 ..     174     197 ..     145     206 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00034
        YppG 46 npyPkqqpqqkqpsqfqSlmsqFkked 72
                 + P+qq+qq+q++q qSl  +F ++ 
  CCE29793.1 26 ISIPRQQQQQQQQQQRQSLARAFHTSP 52
                568********************9875 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.025
        YppG  46 npyPkqqpqqkqpsqfqSlmsqFkkedGkl 75 
                     k  p+++ p +f+Sl++ F   d ++
  CCE29793.1  81 SVAEKSAPNPEDPLDFSSLLAVFAATDAHF 110
                 344457889999***********9998766 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.27
        YppG  29 eqplapqqqmpqqpspynpyPkqq 52 
                  ++++p++ + q  + yn+ P+ +
  CCE29793.1 174 REYIKPIMSAVQASKDYNQQPQRS 197
                 455566666666666667777654 PP

>> TMIE  TMIE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1    0.0057        34      34      66 ..      25      57 ..      11      66 .. 0.85
   2 ?    4.4   0.7    0.0055        33      51      81 ..     253     283 ..     248     286 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0057
        TMIE 34 rfRiPRTkqeIeadyarkklakkfrekLelisn 66
                 + iPR +q+ + + +r+ la+ f+++  ++++
  CCE29793.1 25 SISIPRQQQQQQQQQQRQSLARAFHTSPPTFKK 57
                578********************9987666655 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0055
        TMIE  51 kklakkfrekLelisnseldemdlekalkkv 81 
                 k +a+k +++L+++ +++++e+  e++++ +
  CCE29793.1 253 KDVAHKAEKELQKVLDEKMKEIAAEEVQALK 283
                 779999****************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1629  (0.0908584); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2129.02
//
Query:       CCE29794.1  [L=499]
Description: probable UGA2-succinate semialdehyde dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.8e-169  563.1   1.0   4.3e-169  562.9   1.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.073   12.5   0.0       0.46    9.9   0.0    2.1  1  DUF1487   Protein of unknown function (DUF1487)
       0.17   11.2   0.0         12    5.1   0.0    2.2  2  Coq4      Coenzyme Q (ubiquinone) biosynthesis protein Coq4


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  562.9   1.0  7.2e-173  4.3e-169       1     461 [.      22     483 ..      22     484 .. 0.97

  Alignments for each domain:
  == domain 1  score: 562.9 bits;  conditional E-value: 7.2e-173
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlr 98 
                 w +++s +t++v +P+tg+ i++v++++aed + a++aA++af+a+++l+ +eRa++Lrk+ dl+ e+++++a+l+t+e+Gkp+aea++e ++a+++++
  CCE29794.1  22 WKAAKSgKTFKVNDPSTGTLIGTVAECDAEDTKLAIKAAADAFPAFRRLTGRERAKLLRKWYDLMVENADDIAKLITWENGKPVAEAKGEAAYAANFFE 120
                 677777678****************************************************************************************** PP

                 HHHHHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SS..TC CS
      Aldedh  99 yyaelaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgs..gs 194
                 ++ e+a + +g+++p   +g++ ++++eP+Gv+g+ItPWNfP++++++k+apalaaG+tvv+K   etp++al++ael ++ag+Pkgv+nvvt+     
  CCE29794.1 121 WFSEEAPRTYGDTIPAtVPGNRVWTVKEPVGVCGLITPWNFPAAMITRKVAPALAAGCTVVCKAPGETPFTALAVAELGHRAGIPKGVVNVVTTLenTP 219
                 ****************55**************************************************************************7643388 PP

                 CHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHH CS
      Aldedh 195 evgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaa 293
                 e+g+ l+++p v+kvsftGst+vg+ ++k+++++lk++++ElGG++p+iv++daDld a+++++++ f+ +GQ+C++a+rl+vqe+iyd+fv+k++e++
  CCE29794.1 220 EIGRVLTTDPTVKKVSFTGSTAVGKLLMKQSSDTLKKLSMELGGNAPFIVFDDADLDIAIAGAMASKFRGTGQTCVCANRLYVQEGIYDDFVHKFTEKV 318
                 9************************************************************************************************** PP

                 HT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSST.TEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHH CS
      Aldedh 294 kklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekg.yfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaN 391
                 +++kvg++++edt+ GPli+ ++ +kve+++e+ak++gak++ Gg   +++++ g +f++Ptv+ ++t +m++a+eE+FGPV+ +++fk+e+e++ +aN
  CCE29794.1 319 NAFKVGHGFHEDTTHGPLIHGRAIDKVEAHIEDAKSKGAKVVSGG---HKRPDLGaNFFQPTVIRDMTAEMAMATEETFGPVAGIFPFKTEAEVVTLAN 414
                 *********************************************...455666669****************************************** PP

                 SSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEE CS
      Aldedh 392 dteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevkt 461
                 + ++GLa++ f++dl+r+ rvae+le+G+v++N+ + +++ a pfgGvk+Sg+Greg+k+g+ ey  +k 
  CCE29794.1 415 KVDVGLAGYFFSRDLQRVYRVAEALEVGMVGVNTGIISDPAA-PFGGVKESGFGREGSKYGIGEYQVTKM 483
                 ******************************************.**********************99997 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   7.7e-05      0.46       9     167 ..     268     447 ..     264     452 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7.7e-05
     DUF1487   9 vifedgDlnsale.alveslkePfaegava.tvlveesirdefvervrsklkpls......eevaeHp.sylkalekide.......lkaktisa...k 88 
                 ++f+d+Dl+ a+  a++++++   ++   a  + v+e i d+fv++  +k++ ++      e+ ++ p  + +a++k++          ak++s+   +
  CCE29794.1 268 IVFDDADLDIAIAgAMASKFRGTGQTCVCAnRLYVQEGIYDDFVHKFTEKVNAFKvghgfhEDTTHGPlIHGRAIDKVEAhiedaksKGAKVVSGghkR 366
                 89999999999872455555554444444425899******9999999998876522222133333332234677776654433333445666666644 PP

     DUF1487  89 sesakakasPilVldvthsf.lgdkpt..gvvTlhtFrnakEvvkllakeslkfasvsvwneklaavyelvarlnvdvftiN 167
                  +   +   P +++d+t +  ++ + t   v  +  F++  Evv l++k  + +a  ++++  l  vy ++++l+v ++ +N
  CCE29794.1 367 PDLGANFFQPTVIRDMTAEMaMATEETfgPVAGIFPFKTEAEVVTLANKVDVGLAG-YFFSRDLQRVYRVAEALEVGMVGVN 447
                 444455568999999987652454444325888999***********999999876.899**************99999888 PP

>> Coq4  Coenzyme Q (ubiquinone) biosynthesis protein Coq4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0021        12     150     197 ..      50      98 ..      44     104 .. 0.86
   2 ?    3.8   0.0    0.0053        32      27      73 ..     189     236 ..     169     257 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0021
        Coq4 150 faqtglpmallsalfgpl.rlsskererlleeylpwalragkkakelln 197
                 + +t+l++++ + +f ++ rl+ +er++ll+++++  ++++    +l++
  CCE29794.1  50 AEDTKLAIKAAADAFPAFrRLTGRERAKLLRKWYDLMVENADDIAKLIT 98 
                 56789999999989988879*********************99999864 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0053
        Coq4  27 pergdlvaalgettglpa.lerlrekmlsdeeGrriLkerpritsetl 73 
                 p  + +va lg   g+p  + ++ +++ +++e  r+L++ p++++ ++
  CCE29794.1 189 PFTALAVAELGHRAGIPKgVVNVVTTLENTPEIGRVLTTDPTVKKVSF 236
                 555678************9************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3403.62
//
Query:       CCE29795.1  [L=136]
Description: uncharacterized protein CPUR_03642 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1055.99
//
Query:       CCE29796.1  [L=268]
Description: uncharacterized protein CPUR_03643 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.022   15.2   0.1      0.022   15.2   0.1    2.6  3  DUF4014   Protein of unknown function (DUF4014)


Domain annotation for each model (and alignments):
>> DUF4014  Protein of unknown function (DUF4014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   1.2e-06     0.022       3      37 ..      15      49 ..      13      71 .. 0.92
   2 ?   -3.0   0.9      0.55   9.9e+03      22      39 ..     107     124 ..      99     141 .. 0.67
   3 ?   -0.6   0.1       0.1   1.8e+03      17      38 ..     185     206 ..     172     209 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-06
     DUF4014  3 kilrknyprqsrfkealffplflilmvpispiffi 37
                +ilr+ +p+ +r   a ++pl li +vpi  if i
  CCE29796.1 15 RILRRAWPKSARKGIAWLMPLELIGLVPILVIFGI 49
                79*****************************9977 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.55
     DUF4014  22 plflilmvpispiffiwl 39 
                  lf++l   +s ++ +w+
  CCE29796.1 107 SLFFLLAKLVSFLMNLWV 124
                 456666666666665553 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.1
     DUF4014  17 ealffplflilmvpispiffiw 38 
                  +lf+ l+++++  +   f iw
  CCE29796.1 185 ASLFITLYMLVIYLLNLGFSIW 206
                 5689999998888888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2078.98
//
Query:       CCE29797.1  [L=1309]
Description: related to sensory transduction histidine kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-22   78.8   0.1    9.2e-22   77.7   0.1    1.6  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    7.5e-21   74.4   0.1    1.5e-20   73.4   0.1    1.6  1  Response_reg  Response regulator receiver domain
    1.5e-08   34.9   0.0      0.013   15.7   0.0    3.5  3  PAS_4         PAS fold
    1.1e-07   32.3   0.0      0.005   17.1   0.0    2.7  2  GAF_2         GAF domain
    3.1e-07   30.3   1.9    5.8e-07   29.4   0.1    2.3  2  HisKA         His Kinase A (phospho-acceptor) domain
    3.1e-06   27.4   0.0     0.0071   16.6   0.0    2.9  2  PAS_9         PAS domain
    2.4e-05   24.3   0.1     0.0011   18.9   0.0    3.2  3  PAS           PAS fold
     0.0028   18.0   0.0     0.0066   16.8   0.0    1.6  1  GAF_3         GAF domain
  ------ inclusion threshold ------
       0.04   14.6   0.0          3    8.5   0.0    2.7  2  GAF           GAF domain
      0.056   13.7   0.0       0.17   12.2   0.0    1.9  1  PAS_3         PAS fold
       0.17   11.9   0.0       0.54   10.4   0.0    1.9  1  PAS_8         PAS domain
       0.41   10.4   2.3        1.2    8.8   2.3    1.8  1  Bim_N         Bim protein N-terminus


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.1   6.2e-25   9.2e-22       2     109 ..     959    1106 ..     958    1109 .. 0.80

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 6.2e-25
                  HHHHHHHHHHHHHHHHHHHHS..TTTEEEEEEEE...................EE..................TEEEEEEEESSSSSTTHHHTGTCS CS
   HATPase_c    2 dekrLrqiisnlvdNavkfat..kageieveika...................se..................ddlvisveDnGiGipkedlkklfe 59  
                  d++rL q+++nl++Na+kf+   +  +i+v+++a                   s+                   +l+ sveD+G+G+ +e++k+lf+
  CCE29797.1  959 DPSRLSQVLINLMTNAIKFTRgrEHRKITVNLSAskdisevtktgvlyfdkneSQrasgmdihdtkewgtgelINLHCSVEDTGPGLAEEEMKLLFQ 1055
                  899****************54446667777666666666665555555554440033344444455677778899********************** PP

                  TTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEE CS
   HATPase_c   60 kfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftftlp 109 
                  +f+q    t +++gg+GlGl i++ l+e+ gG+i v+s+ g G++f f+++
  CCE29797.1 1056 RFQQaTPRTHVQYGGSGLGLFISRILTEMQGGQIGVSSKRGVGSKFNFYIQ 1106
                  *****999********************7779***************9986 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.1     1e-23   1.5e-20       1     111 [.    1169    1295 ..    1169    1296 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 1e-23
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH...........ESEEEEESSCSSSEHHHHHHHHHHCT......TTSEEEEEE CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek...........vdlillDinmpgmdGlellkeireed......pelpviilt 78  
                    vliv+D+ +++++l+++l++ g  ++ +a++g eal++l++++           + +il+D++mp mdGl+ +++ir+ +       ++p+i++t
    CCE29797.1 1169 VLIVEDNIVNQRVLQRQLRQCGN-NTFVANHGFEALQMLQKSRfwagqeqsgvdISVILMDLEMPVMDGLTCARKIRQLEmegtllAHIPIIAVT 1262
                    8*********************9.***************99888889999999999***********************988777778******* PP

                    SSTSHHHHHHHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg   79 ahseeedavealkagaddflsKpfdpeeLlkal 111 
                    a++  e+++ a  +g+dd++sKpf+ +eLl ++
    CCE29797.1 1263 AYARPEQIESAKAVGIDDVISKPFRVAELLPKI 1295
                    ****************************99776 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.74   1.1e+03      13      75 ..     111     172 ..     107     185 .. 0.79
   2 !   14.1   0.0   2.7e-05     0.041      10     108 ..     355     456 ..     349     458 .. 0.87
   3 !   15.7   0.0     9e-06     0.013       5     108 ..     699     808 ..     696     809 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.74
       PAS_4  13 pdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll.p 75 
                 p +++ly+Na+ +     +   l+G  + e+  +++ +r+ +  + +l+g+++++++ ++ +  
  CCE29797.1 111 PRLHILYYNASLRL--SQDVMKLIGGEPDEVGVAGSYDRFISWATFLLTGRTSHDSTSITSHvY 172
                 66899*****9666..899999999999999888899999998888888888888888777753 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.7e-05
       PAS_4  10 vldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll.....pgeerhyelrllPlrdesGevigvlvisr 103
                 +++pd +++y N+a+ +l+g    +l+G+++++ + e   +++ + ++ +++++e+   ++ +l+       ee ++++ ++Pl  ++Ge++g++  + 
  CCE29797.1 355 YWGPDCVIIY-NEAYISLAGQKHPQLMGSRYQDAWAE-IWDEIKPVVDNAWKSGESTMKHDNRLFikrdgFLEETFFSWAMMPLIGSEGEIVGLYNPCF 451
                 6677777775.*************************9.***************************8776556788888888************998777 PP

       PAS_4 104 DiTer 108
                 + T+r
  CCE29797.1 452 ENTRR 456
                 77766 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 9e-06
       PAS_4   5 pdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll......pgeerhyelrllPlrdesGevig 97 
                 p++ ++ d++g + y+N  + ++ ++ + ++  + +   +  ed++ le+a++r+++++ +i+ +   ++         + +++l+++P ++++G+   
  CCE29797.1 699 PVGMFIADAHGAINYCNDMWWQISRHIRSQAAESDWMTSVRNEDRPLLEAAWARLIDEKVTISLEFRFNCsqqndgTMIDTWVLLSAFPEKNPDGTLKS 797
                 8999999***********9888666666666666666667778***************************99974444478****************** PP

       PAS_4  98 vlvisrDiTer 108
                 +++ ++Di+ +
  CCE29797.1 798 IFGCITDISSQ 808
                 ********976 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00011      0.16      59     136 ..     388     476 ..     361     478 .. 0.70
   2 !   17.1   0.0   3.4e-06     0.005      59     137 ..     559     646 ..     502     647 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                 HHHHHHHTS-EEES-.GGG-S-HHHHH........HHHHTT--EEEEEE-T.TS---EEEEE.S......--HHHHHHHHHHHHHHHHH CS
       GAF_2  59 vgealrtgrpvilnd.leedpdkkglp........aghaglrsflavPlis.egrvvGvlnl.yankppafdeedlelLeelaeqiaia 136
                 ++e++ + +pv+ n     +  +k+ +          ++ + s++ +Pli+ eg++vG  n  + n +++ +e+ ++ L+e++e +a a
  CCE29797.1 388 WAEIWDEIKPVVDNAwKSGESTMKHDNrlfikrdgFLEETFFSWAMMPLIGsEGEIVGLYNPcFENTRRKVNERRMHTLREIGEKVAAA 476
                 55666666666655543333333333323322222555666666****************9535778888**************99987 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3.4e-06
                 HHHHHHHT.S-EEES-.GGG-S-HHHHHHHHHTT--E....EEEEE-T...TS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2  59 vgealrtg.rpvilnd.leedpdkkglpaghaglrsf....lavPlis...egrvvGvlnlyankppafdeedlelLeelaeqiaiai 137
                 + ++l tg  pv+l+    + p +  ++ +++g r+     +++P+i    ++ v G+++l+an ++++d++ + ++++l++q+a+ +
  CCE29797.1 559 MRQSLSTGgSPVVLSAkAGTLPTHLLQNIDWRGSRHPcttiVVFPVIPtttKEAVAGFIVLGANPRRPYDDDYQLFVQLLSRQLATSL 646
                 556666655788877777777777777777777777777778888855312445******************************9865 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       1.1   1.6e+03       5      31 ..     634     669 ..     632     694 .. 0.66
   2 !   29.4   0.1   3.9e-10   5.8e-07       2      66 ..     829     906 ..     828     907 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHHHHHHHHC........... CS
       HisKA   5 flagvaHELrtPLsailgnaeaLkre.........g 31 
                 f++ ++ +L t L+++ ++ e ++r          +
  CCE29797.1 634 FVQLLSRQLATSLASVVLFEEEIRRGqraarlaalD 669
                 778888999999999999999998865555544431 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 3.9e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC........T-HSSCHHHHHHHHHHHH.......HHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre......gklteelkeyletiesear.......rldhlvedlLdlsriea 66 
                 ++ f+   +HE+r+PLsail  a+ +  +      +  + e++e+le   + a+       +  ++v+d+L+ls++++
  CCE29797.1 829 QENFIDITSHEMRNPLSAILQCADQIVSSissfdsHGQSTEVRELLEGCLDAANtvnlcasHQKRIVDDILTLSKLDS 906
                 56789999*****************977778999977789999999999999999999999***************97 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0029       4.3       9      94 ..     358     445 ..     351     452 .. 0.89
   2 !   16.6   0.0   4.8e-06    0.0071       1     103 [.     699     806 ..     699     807 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0029
       PAS_9   9 pdgrilyaNeaalrllGyspeevlgksitdlf.vtdpeanerlraaleqgrkkerevevvlirkng..etfwvlltaspvkdddgelvg 94 
                 pd+ ++ +Nea + l G+++ +++g ++ d   +  +e +  +++a+++g+++ ++++  +i+++g  e+ ++   + p++ ++ge+vg
  CCE29797.1 358 PDC-VIIYNEAYISLAGQKHPQLMGSRYQDAWaEIWDEIKPVVDNAWKSGESTMKHDNRLFIKRDGflEETFFSWAMMPLIGSEGEIVG 445
                 788.9**********************99999988899999999999999999999999******999777778888888888888887 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 4.8e-06
       PAS_9   1 pdgilidnpdgrilyaNeaalrllGys.peevlgksitdlf..vtdpeanerlraaleqgrkkerevevvlirkng...etfwvlltaspvkdddgelv 93 
                 p+g++i + +g i y+N+++ ++   + + +    ++ + +  ++ p  +   +++++++ ++  e+   +   n+      wvll+a+p k+ dg+l+
  CCE29797.1 699 PVGMFIADAHGAINYCNDMWWQIS-RHiRSQAAESDWMTSVrnEDRPLLEAAWARLIDEKVTISLEFRFNCSQQNDgtmIDTWVLLSAFPEKNPDGTLK 796
                 789***99***777*********6.3445555555555555677777777777777777776777777777666663445568**************** PP

       PAS_9  94 giivilrDit 103
                 +i ++++Di+
  CCE29797.1 797 SIFGCITDIS 806
                 *********9 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.44   6.5e+02      23      51 ..     361     389 ..     350     408 .. 0.88
   2 !   18.9   0.0   7.5e-07    0.0011       2     113 .]     690     805 ..     689     805 .. 0.85
   3 ?   -0.3   0.0      0.69     1e+03      44     102 ..    1164    1216 ..    1159    1224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.44
                 EEEECHHHHHHHSSTHHHCTTSBGGGGBS CS
         PAS  23 ilyvNaaaeellGlsreevlgkslldlih 51 
                 ++  N+a+ +l G +  +++g+ + d + 
  CCE29797.1 361 VIIYNEAYISLAGQKHPQLMGSRYQDAWA 389
                 6778*****************99888775 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 7.5e-07
                 HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC...TTSS..EEEEEEEEEE CS
         PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl...rdgr..pihlevrasp 95 
                 ++ ++ e +p+++f+ D+ g i+y+N+ + ++    r+++  +  + ++ +ed+  l e+ + +l + +   + e +f+     dg+   +++++ a p
  CCE29797.1 690 RFTRMAEFAPVGMFIADAHGAINYCNDMWWQISRHIRSQAAESDWMTSVRNEDRP-LLEAAWARLIDEKVTISLEFRFNCsqqNDGTmiDTWVLLSAFP 787
                 56788899******************************************99875.9999999999999999999999999876666224578888888 PP

                 EEETTEEEEEEEEEEEES CS
         PAS  96 vrdaggeilgflgvlrdi 113
                   +++g+++ ++g + di
  CCE29797.1 788 EKNPDGTLKSIFGCITDI 805
                 888888888888887776 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.69
                  SBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEETTEE CS
         PAS   44 kslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevraspvrdagge 102 
                  +s++d+++ ed      ++ q+ +q++ +++g+ +f   ++++  l++ ++++++ag+e
  CCE29797.1 1164 RSIFDVLIVED-----NIVNQRVLQRQLRQCGNNTFVA-NHGFEALQMLQKSRFWAGQE 1216
                  67888888854.....6899999999999999999999.99988888888888888887 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.4e-06    0.0066      80     128 ..     599     647 ..     576     648 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.4e-06
       GAF_3  80 draalavPLvagrqviGvlalastkprafdaedlelleslArqiataie 128
                      ++P ++++ v G+++l+ ++ r++d++ + +++ l+rq+at+++
  CCE29797.1 599 IVVFPVIPTTTKEAVAGFIVLGANPRRPYDDDYQLFVQLLSRQLATSLA 647
                 444457999**9**********************************985 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0       0.1   1.5e+02      60     132 ..     407     476 ..     353     477 .. 0.66
   2 ?    8.5   0.0     0.002         3      59     132 ..     567     645 ..     510     646 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.1
                 SSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEE.TTEEEEEE..EEEESSSCSHHHHHHHHHHHHHHHHHH CS
         GAF  60 qplvipdstpdprfaqynrrdllenmgirsslvvPlvn.dgelwGll..vlhnpsppftreelellqvladqvava 132
                 ++   +   +   f +   rd + +  + s++ +Pl+  +ge++Gl   ++ n++++ ++  ++ l+++++ va a
  CCE29797.1 407 ESTMKH---DNRLFIK---RDGFLEETFFSWAMMPLIGsEGEIVGLYnpCFENTRRKVNERRMHTLREIGEKVAAA 476
                 444444...2333444...33344444559*******66******9733556676678888888888888888765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.002
                 SSSEEESTGG...TSTTHHTTHHHHHHHHTTES.EEEEEEEE...ETTEEEEEEEEEE.SSSCSHHHHHHHHHHHHHHHHHH CS
         GAF  59 gqplvipdst...pdprfaqynrrdllenmgir.sslvvPlv...ndgelwGllvlhn.psppftreelellqvladqvava 132
                 g p+v++  +      + +q  + d+ +  +++ + +v P++    ++ + G +vl   p++p++++   ++q l++q+a +
  CCE29797.1 567 GSPVVLSA-KagtLPTHLLQ--NIDWRGSRHPCtTIVVFPVIpttTKEAVAGFIVLGAnPRRPYDDDYQLFVQLLSRQLATS 645
                 55666663.12224455556..455555555555888889996434888*********87778*99999999*******986 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011      0.17      24      82 ..     732     795 ..     713     802 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
       PAS_3  24 eswldlvhpeDrervrealqealkkgepyegeyRirrk...dGeyr..wveararvirdengkp 82 
                 ++w+  v  eDr+ +++a++++++++  ++ e+R+ +    dG+++  wv  +a++ ++ +g  
  CCE29797.1 732 SDWMTSVRNEDRPLLEAAWARLIDEKVTISLEFRFNCSqqnDGTMIdtWVLLSAFPEKNPDGTL 795
                 48*********************************87544477775447777777777777765 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00036      0.54       2      45 ..     690     729 ..     689     756 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
       PAS_8   2 rlralfesspdgiavvd.lgdrivdvNqaalellGysadlkgell 45 
                 r+  + e +p+g++++d  g  i ++N+ + ++      ++++  
  CCE29797.1 690 RFTRMAEFAPVGMFIADaHGA-INYCNDMWWQISR----HIRSQA 729
                 78889999*********6666.********99987....444433 PP

>> Bim_N  Bim protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.3   0.00083       1.2      20      39 ..     196     212 ..     192     213 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00083
       Bim_N  20 eRpaqprqLRpGAPTSLqte 39 
                 +Rp +   LRpG P SL+te
  CCE29797.1 196 SRPSS---LRPGSPLSLSTE 212
                 56666...***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.42
# Mc/sec: 9252.77
//
Query:       CCE29798.1  [L=504]
Description: uncharacterized protein CPUR_03645 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-39  132.6   1.9    6.7e-39  132.6   1.9    3.3  4  PH_6      Pleckstrin homology domain
    0.00027   21.4   0.0    0.00063   20.2   0.0    1.6  1  PH        PH domain
  ------ inclusion threshold ------
      0.016   15.1   0.2      0.042   13.7   0.2    1.7  1  PH_13     Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PH_6  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   1.9   1.1e-42   6.7e-39       1     112 []      76     181 ..      76     181 .. 0.97
   2 ?   -3.0   0.3       1.4   8.5e+03      13      13 ..     230     230 ..     202     255 .. 0.54
   3 ?   -2.8   0.1       1.3   7.5e+03      10      31 ..     337     359 ..     329     371 .. 0.38
   4 ?   -2.9   1.3       1.3     8e+03      16      41 ..     455     480 ..     448     501 .. 0.55

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 1.1e-42
        PH_6   1 nflytKkffwfgtdavepkalssllksekeaesaedaheviawAsetGkGLLffskkedkaspsgvinLadasevaadgeqkFhltakGkkhtFkasst 99 
                 n++ +K+ff fgt+ +epkal+++l++ek++e+   ah++i+wAs+tG+GLLf +   dk++ps vinLad +e+++dg++kFh+t kG khtFka+++
  CCE29798.1  76 NLIPSKEFFSFGTESLEPKALAAYLRTEKNTEN---AHHNISWASHTGNGLLFMG---DKKAPSNVINLADTTEPETDGANKFHFTHKGAKHTFKAANA 168
                 6899***********************988877...7*****************9...***************************************** PP

        PH_6 100 aeRdnWvaqlkek 112
                 aeRd Wvaqlk+k
  CCE29798.1 169 AERDSWVAQLKTK 181
                 **********986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
        PH_6  13 t 13 
                 t
  CCE29798.1 230 T 230
                 1 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.3
        PH_6  10 wfgt.davepkalssllksekea 31 
                 +fg+  a ++k++ + + +e+ +
  CCE29798.1 337 FFGNvFAKKEKKVTEAKPTEEAV 359
                 44442222233333333332222 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.3
        PH_6  16 vepkalssllksekeaesaedahevi 41 
                 +e+ka+++  k+++ a++  +    +
  CCE29798.1 455 TEEKAAEETVKEDAAAPAVVEEPAAV 480
                 56666666666654444433322222 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.1e-07   0.00063      24     101 ..     117     179 ..      97     183 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.1e-07
                 EEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHHH CS
          PH  24 vLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWikaiq 101
                   +++ ll+  ++     k p ++i+l +++  e+    d+ +kf+f +     +g  +++++a+++ er +W+++++
  CCE29798.1 117 SHTGNGLLFMGDK-----KAPSNVINLADTTEPET----DGANKFHFTH-----KG-AKHTFKAANAAERDSWVAQLK 179
                 5566667777777.....99999999999999754....5666666666.....66.99*****************98 PP

>> PH_13  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2     7e-06     0.042      85     132 ..     134     181 ..     128     204 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7e-06
                 TSEEEE--SSS-.----EEEEEESSEEEEEEESSHHHHHHHHHHHHHH CS
       PH_13  85 nevlvkkpsdksdssekvlklsdidkvitlkaesanersaWvkkikeA 132
                 n + + ++++++++  + ++ +++    t+ka++a er++Wv ++k  
  CCE29798.1 134 NVINLADTTEPETDGANKFHFTHKGAKHTFKAANAAERDSWVAQLKTK 181
                 5567788999999999**************************998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1497  (0.083496); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.44
# Mc/sec: 3458.63
//
Query:       CCE29799.1  [L=651]
Description: uncharacterized protein CPUR_03646 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4621.19
//
Query:       CCE29800.1  [L=102]
Description: uncharacterized protein CPUR_03647 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-21   75.1  12.5    4.7e-21   74.7  12.5    1.2  1  Ribosomal_L36  Ribosomal protein L36


Domain annotation for each model (and alignments):
>> Ribosomal_L36  Ribosomal protein L36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7  12.5   2.6e-25   4.7e-21       1      38 []      59     102 .]      59     102 .] 0.99

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 2.6e-25
  Ribosomal_L36   1 MKVrssvkkmcegCkvvrRk......grvyviCkknPrhKqRQG 38 
                    MKV+ssvkk+ce+CkvvrRk      g++y+iCk nPrhKqRQG
     CCE29800.1  59 MKVQSSVKKRCEHCKVVRRKsgkrhnGYLYIICKVNPRHKQRQG 102
                    *******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 790.14
//
Query:       CCE29801.1  [L=98]
Description: uncharacterized protein CPUR_03648 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-19   69.5   0.3      3e-19   68.8   0.3    1.4  1  Complex1_LYR    Complex 1 protein (LYR family)
      1e-08   35.8   0.1    1.4e-08   35.4   0.1    1.2  1  Complex1_LYR_2  Complex1_LYR-like


Domain annotation for each model (and alignments):
>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.3   3.4e-23     3e-19       2      57 ..      33      88 ..      32      90 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 3.4e-23
  Complex1_LYR  2 qvLsLYRalLRearkfpdyntreyfrrriRdeFrknkhvtDpekieellkkgreeL 57
                  +vLsLYR++LR++r + d++t+ + rr +RdeF+ ++hvtD+  i++ll+ g+ + 
    CCE29801.1 33 RVLSLYRTILRATRPIRDTQTKSETRRFVRDEFESHRHVTDITHIRYLLSTGKTQW 88
                  8***************************************************9886 PP

>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   1.6e-12   1.4e-08       1      60 [.      34      94 ..      34      98 .] 0.93

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.6e-12
  Complex1_LYR_2  1 vlsLYrrllrelrel.ppelrslgdayvraefrrhkhlknpeeialflknqreYaellery 60
                    vlsLYr++lr+ r     + +s  ++ vr+ef++h+h+++  +i+ +l+  ++  + +ery
      CCE29801.1 34 VLSLYRTILRATRPIrDTQTKSETRRFVRDEFESHRHVTDITHIRYLLSTGKTQWQSMERY 94
                    79**********976677888***************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 692.92
//
Query:       CCE29802.1  [L=239]
Description: uncharacterized protein CPUR_03649 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-14   53.9   0.0    2.8e-14   53.3   0.0    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    8.4e-09   35.4   0.0    1.4e-08   34.7   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.2e-08   35.2   0.0    2.2e-08   34.4   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    6.7e-05   22.8   0.0    0.00015   21.7   0.0    1.5  1  FR47             FR47-like protein
     0.0017   19.0   0.0     0.0024   18.6   0.0    1.3  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
     0.0042   17.2   0.0     0.0075   16.4   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.069   13.3   0.0        0.1   12.8   0.0    1.2  1  Acetyltransf_4   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   1.1e-17   2.8e-14      31     117 .]     105     193 ..      72     193 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.1e-17
                     TTC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTE.SEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  31 eae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegi.kkivlaveedndaairlYeklGF 117
                      +e +++++++d+++ Gf+s+ + +++ + v y ++++ + e  g+GlG++L+  l e   + ++ +k++l+++++n++a+ +Ye+lGF
      CCE29802.1 105 SPElRYILVLRDDQVCGFMSMMPTYENGEAVLYCYEIHLKTELKGSGLGKQLMHFLFEAGDRIQLvDKVMLTCFVSNKHARQFYERLGF 193
                     444477889*****************999*****************************77777999**********************9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   5.6e-12   1.4e-08      22     109 ..     100     196 ..      92     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 5.6e-12
  Acetyltransf_10  22 lrerieegealllvaeeggkivGviel.rdgs......hisllfVdpeyrgqGigkaLleaveeeaekdgikl..eltvnasp.yavpfYeklG 105
                      ++ +++++e  ++++ ++++++G+ ++  + +      + + +  + e +g G+gk+L++++ e+ ++ ++     lt+  s+ +a++fYe+lG
       CCE29802.1 100 MK-EMRSPELRYILVLRDDQVCGFMSMmPTYEngeavlYCYEIHLKTELKGSGLGKQLMHFLFEAGDRIQLVDkvMLTCFVSNkHARQFYERLG 192
                      44.4569******************9977776889*9999999*******************9996665554447999999999********** PP

  Acetyltransf_10 106 Fkav 109
                      F + 
       CCE29802.1 193 FDVD 196
                      *876 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   8.4e-12   2.2e-08       6      75 ..     111     194 ..     106     195 .. 0.72

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 8.4e-12
                     EEEEETTEEEEEEEEEEES......TCTEEEEE-GGGTTSSHHHHHHHH......TTSEEEEE.EEEE....THHHHHHHHHHTTEE CS
  Acetyltransf_7   6 fVaeddgkivGfialslld......aeitrlaVdpeyrgkGiGraLlea......aekgiile.qlel....naekaikfYeklGFe 75 
                     +++ +d++++Gf++++++        ++ ++  ++e  g G+G++L+ +      +   i+l+ ++ l    ++++a++fYe+lGF 
      CCE29802.1 111 ILVLRDDQVCGFMSMMPTYengeavLYCYEIHLKTELKGSGLGKQLMHFlfeagdR---IQLVdKVMLtcfvSNKHARQFYERLGFD 194
                     446789********9999887776555555889***************75433321...44344333344545559999*******5 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.8e-08   0.00015      25      80 ..     139     196 ..     133     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 5.8e-08
                 EEEEE-GGG-SSSHHHHHHHHHHHH..HHHS-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  25 galqvlpehrrrGlgsrlvkalake..iaergktvllvvvasNtpsirlyeklGfeki 80 
                 + + ++ e ++ Glg++l + l ++   ++  ++v+l    sN+ ++++ye+lGf ++
  CCE29802.1 139 YEIHLKTELKGSGLGKQLMHFLFEAgdRIQLVDKVMLTCFVSNKHARQFYERLGFDVD 196
                 5678899***************87611456889**********************875 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   9.3e-07    0.0024      51     137 ..     105     193 ..      56     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.3e-07
  Acetyltransf_3  51 eegygwaivlkdtgviGsvglrdleeedee..aelgymlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     + ++ +++vl+d++v G++++ +  e+ e+     ++ l+++  g G+++  ++ l e+  + + +++++ ++  +N+  ++ +e+lGf
      CCE29802.1 105 SPELRYILVLRDDQVCGFMSMMPTYENGEAvlYCYEIHLKTELKGSGLGKQLMHFLFEAGDRIQLVDKVMLTCFVSNKHARQFYERLGF 193
                     2347799999***88*******99999887788888889999******************8888899*********************9 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.9e-06    0.0075       4      64 ..     112     177 ..     109     187 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.9e-06
  Acetyltransf_CG   4 ltldegeevafl....eYevrkegvldfthTeVpeelrGkGiAkkLvkaalddareegl..kvvptC 64 
                      l l++++  +f+    +Ye ++e vl  + +  ++el+G G++k+L+   ++   + +l  kv +tC
       CCE29802.1 112 LVLRDDQVCGFMsmmpTYE-NGEAVLYCYEIHLKTELKGSGLGKQLMHFLFEAGDRIQLvdKVMLTC 177
                      5555677888887777898.9999************************9998766665555666666 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.9e-05       0.1      46     137 ..     105     196 ..      80     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
  Acetyltransf_4  46 sekeyvflvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvl.keqnienllaeiaspnensiqfhkalGFelv 137
                     s++ +  lv+ +d++ G + +      ++      ++ l+ +  +  glg++l+ +l +   + q + + +   +++n+ + qf+++lGF++ 
      CCE29802.1 105 SPELRYILVLRDDQVCGFMSMMPTYENGEAVLYCYEIHLK-TELKGSGLGKQLMHFLFEAGdRIQLVDKVMLTCFVSNKHARQFYERLGFDVD 196
                     6665666788899999999988444435666666667776.789999*************9999999999999999**************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1853.87
//
Query:       CCE29803.1  [L=205]
Description: uncharacterized protein CPUR_03650 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-22   79.3  11.5    4.3e-22   79.0  11.5    1.1  1  PLAC8     PLAC8 family


Domain annotation for each model (and alignments):
>> PLAC8  PLAC8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0  11.5   2.4e-26   4.3e-22       1      99 []      70     172 ..      70     172 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 2.4e-26
       PLAC8   1 Wstglfdcfsdlevcllalfcpcvllgqnaerldsg........nlscllllvlllallvllglgllatlllRskiRekyniegssceDclaslcCacC 91 
                 W+ glf+cf d+++ ll++++pcvl+g+++ r++ +        n +c+++ ++ +     +g+g+l+ l+ R++iR+ y+i gs ++Dc++s++C cC
  CCE29803.1  70 WQFGLFSCFGDMKSSLLGCCLPCVLHGRTMDRIKDPslqshdplNSECIVWSAIQC----FTGCGCLYNLIKRGEIRNLYGIHGSGFSDCCTSYWCLCC 164
                 9*******************************988877777777777776433222....2567999******************************** PP

       PLAC8  92 alaQeare 99 
                 al+Q++re
  CCE29803.1 165 ALVQQDRE 172
                 ******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1504.69
//
Query:       CCE29804.1  [L=539]
Description: probable IMP dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.6e-126  422.0   5.8   1.9e-126  421.7   5.8    1.1  1  IMPDH         IMP dehydrogenase / GMP reductase domain
      2e-13   50.6   0.0    1.3e-05   25.6   0.0    2.5  2  CBS           CBS domain
    5.9e-09   35.4   1.5    4.7e-07   29.2   0.6    2.3  2  FMN_dh        FMN-dependent dehydrogenase
    1.8e-06   27.6   3.9       0.01   15.3   3.1    2.5  2  NMO           Nitronate monooxygenase
     0.0013   18.2   2.3      0.035   13.6   0.2    2.3  2  His_biosynth  Histidine biosynthesis protein
  ------ inclusion threshold ------
      0.089   12.1   0.9       0.21   10.8   0.3    1.9  2  ThiG          Thiazole biosynthesis protein ThiG


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.7   5.8  6.5e-130  1.9e-126       1     344 [.      44     528 ..      44     529 .. 0.96

  Alignments for each domain:
  == domain 1  score: 421.7 bits;  conditional E-value: 6.5e-130
                 E--GGGEEEE---B-S-GGGSB--EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTS................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
       IMPDH   1 gltfddvllvpaksevlpkevdlktkltkkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrs................. 82 
                 glt++d+ll+p+++ + ++ev+l++ +tk+i+l++P+vs++mdtvte+emAi++a +Gg+gvih+n+s+e+qa++v+kvkr+                 
  CCE29804.1  44 GLTYNDFLLMPGYIGFPASEVTLDSAITKRISLKTPFVSSPMDTVTEHEMAIHMALQGGLGVIHHNCSPETQADMVRKVKRYengfildpvviarnttv 142
                 79************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       IMPDH  83 ................................................................................................... 82 
                                                                                                                    
  CCE29804.1 143 geakalkekwgfggfpvtedgklgskllgivtnrdlqfeddaavsvadvmvtelvtapngvtlieankilaqskkgklpivdknfnlvsmisrsdltkn 241
                 *************************************************************************************************** PP

                 ...TTSXBX.TTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-S CS
                 ...xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  83 ...pnaakd.ekgrllvgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpG 177
                    p a+k  ++++l+++aa+g++ +++ r+++lveag+d++++ds++g+s +++e++k+ik++++ ++vi+Gnv+t+e+a++Li+ag+d++++G+G+G
  CCE29804.1 242 qhfPLASKLpDSKQLICAAAIGTRPEDKIRLAMLVEAGLDIVILDSSQGNSMYQIEMIKWIKAEFPGLDVIGGNVVTREQAASLIAAGVDGLRIGMGSG 340
                 ***8888844899****************************************************99******************************** PP

                 TTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEET.TEEEEEEEETTSHHHHHH.... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.... RF
       IMPDH 178 siCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgevilie.grkyKeyrGmgslgamkk.... 271
                 s C+t++v++vG+pq+ +v++v+++a+++gvp+iaDGG+++ g+ivk la+Ga++vm+G llagt+Espg  ++ + g+ +K+yrGmgs++am++    
  CCE29804.1 341 SACITQEVMAVGRPQAASVYSVSNFAARFGVPCIADGGVQNVGHIVKGLALGASTVMMGGLLAGTTESPGTSFVSReGKLVKAYRGMGSIDAMQDkkag 439
                 **********************************************************************9988766****************555689 PP

                 ..........-SS-TTS-...--SS-SBEEEEEE--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHH.....H-EEEEE-HHHHHHHS- CS
                 ..........xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxx RF
       IMPDH 272 ..........gskdryfqk.keklvpeGvegrvpykgsvkevveqlvgglrsgmgylGaktieelke.....kakfvritaaglkeshv 344
                             + ryf++ ++ lv++Gv+g+v+++gs++++v +l++gl+++m+++G+k+++el++      ++f+ +ta+++ e++v
  CCE29804.1 440 gggkdsqksnAGTARYFSEgDSVLVAQGVSGSVAHRGSINKFVPYLAAGLKHSMQDCGMKSLAELHQgaasgVVRFELRTASAQLEGNV 528
                 9877665432245599986477*********************************************88888889*********99976 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   3.9e-08   0.00012       8      51 ..     132     178 ..     118     182 .. 0.87
   2 !   25.6   0.0   4.3e-09   1.3e-05       1      53 [.     188     240 ..     188     243 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.9e-08
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTB....EEEEEEHHHH CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVVdedgk....lvGivtlrDl 51 
                 d+v++  +tt++ea  l ++ g++++PV+ edgk    l+Givt rDl
  CCE29804.1 132 DPVVIARNTTVGEAKALKEKWGFGGFPVT-EDGKlgskLLGIVTNRDL 178
                 799************9986666*******.89955566*********8 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 4.3e-09
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHH CS
         CBS   1 VgdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllr 53 
                 V+d+m +++vt+p   tl ea +++++++ + lP+Vd++ +lv +++++Dl +
  CCE29804.1 188 VADVMVTELVTAPNGVTLIEANKILAQSKKGKLPIVDKNFNLVSMISRSDLTK 240
                 89***********************965569*****9999**********976 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.6   1.6e-10   4.7e-07     197     303 ..     288     402 ..     230     416 .. 0.77
   2 !    4.8   0.0    0.0041        12     308     344 ..     471     507 ..     442     510 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.6e-10
                 CHB-TC--HHHHHHHHHHHSSEEEEEE.E-SHHHHHHHHHTTESEEEE--GGG.........TSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHH CS
      FMN_dh 197 kqldpsltwddikwlreqtklplvvKG.vltaedakraveaGvdgivvSNHGG.........RqldgapatidvLpeiveavggrievlvDgGirrGsD 285
                 +q ++  + + ikw++++ ++  v+ G v+t e a  +++aGvdg+ +    G            +   a++    + +++ g  ++ ++DgG+++  +
  CCE29804.1 288 SQGNSMYQIEMIKWIKAEFPGLDVIGGnVVTREQAASLIAAGVDGLRIGMGSGsacitqevmAVGRPQAASVYSVSNFAARFG--VPCIADGGVQNVGH 384
                 45566678899********9765665549*******************99999777776433222233344444444445554..9************* PP

                 HHHHHHTT-SEEEESHHH CS
      FMN_dh 286 vlkAlalGAdavllGRpf 303
                 ++k lalGA+ v++G  +
  CCE29804.1 385 IVKGLALGASTVMMGGLL 402
                 ***************765 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0041
                 HHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHCG CS
      FMN_dh 308 aagGeeGvervleilraelertmallGvksvaeldrs 344
                 +++++  +++ +  l a l+++m+ +G+ks+ael++ 
  CCE29804.1 471 SVAHRGSINKFVPYLAAGLKHSMQDCGMKSLAELHQG 507
                 45667778999999********************986 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0     9e-05      0.27       3      59 ..      69     124 ..      67     145 .. 0.88
   2 !   15.3   3.1   3.4e-06      0.01     187     237 ..     355     414 ..     311     423 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9e-05
         NMO   3 lltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyltaDrlakeirkvka 59 
                 ++t+ +  k p v ++m  +++ ++a   + +GgLGv+     ++   a+ +rkvk+
  CCE29804.1  69 AITKRISLKTPFVSSPMDTVTEHEMAIHMALQGGLGVIH-HNCSPETQADMVRKVKR 124
                 5677788999****************************9.66677777788888876 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.4e-06
         NMO 187 qvldavd.........iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdakdah 237
                 q++++ +         +P iA GG+ +   +   LalGAs v +g  + +t es+    +
  CCE29804.1 355 QAASVYSvsnfaarfgVPCIADGGVQNVGHIVKGLALGASTVMMGGLLAGTTESPGTSFV 414
                 4444444445666788**************************************977665 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.1    0.0094        28      48     102 ..     282     336 ..     274     342 .. 0.83
   2 !   13.6   0.2   1.2e-05     0.035     164     223 ..     343     402 ..     337     407 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0094
                   EEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEES CS
  His_biosynth  48 vvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleagadkviig 102
                   +v ld ++ ++  ++++++ i  e+     +GG + + e++++l+ ag+d + ig
    CCE29804.1 282 IVILDSSQGNSMYQIEMIKWIKAEFPGLDVIGGNVVTREQAASLIAAGVDGLRIG 336
                   67788899999999**********6666667777***************965554 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.2e-05
                   EEEEETTTTTTSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTCSEEEESHHH CS
  His_biosynth 164 illtdidrdGtlsGpdleltkelaeavkipviasGGvgsledlkelksegvdavivgsal 223
                    + +++ ++G  +   +  ++++a+++ +p ia GGv+++ ++ +  + g++ v++g +l
    CCE29804.1 343 CITQEVMAVGRPQAASVYSVSNFAARFGVPCIADGGVQNVGHIVKGLALGASTVMMGGLL 402
                   567778888888888888899999999999999999999999999999999999999766 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.39   1.2e+03     106     183 ..     199     279 ..     189     303 .. 0.52
   2 ?   10.8   0.3   7.2e-05      0.21     165     210 ..     360     405 ..     339     411 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.39
                 EB-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHH..HHTT-SEBEEBSSSTTS----S-HHHHHHHHH.H-SS-BEEES- CS
        ThiG 106 lPdvvetlkaaeiLvkeGFevlpYvsdDlvlarrl..eevGcaavmPlaapiGsglGllnkealkiiie.eakvPvivDAG 183
                  P+ v +++a +iL++     lp v ++  l   +   ++  +   Pla+ +  ++ l  ++a+ +  e ++++ ++v+AG
  CCE29804.1 199 APNGVTLIEANKILAQSKKGKLPIVDKNFNLVSMIsrSDLTKNQHFPLASKLPDSKQLICAAAIGTRPEdKIRLAMLVEAG 279
                 566666777777766655555555554444433331124444444455544444444444444443332023444444444 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 7.2e-05
                 HHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEESHHHHTS CS
        ThiG 165 ealkiiieeakvPvivDAGigspsdaaqamelGadavllntavaea 210
                 + ++ + +++ vP i D G+ +  ++++ + lGa++v++   +a +
  CCE29804.1 360 YSVSNFAARFGVPCIADGGVQNVGHIVKGLALGASTVMMGGLLAGT 405
                 6677788999****************************98777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3864.97
//
Query:       CCE29805.1  [L=531]
Description: uncharacterized protein CPUR_03652 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-05   23.5   0.0     0.0021   17.9   0.0    2.2  2  DUF659         Protein of unknown function (DUF 659)
     0.0016   18.2   0.3     0.0036   17.1   0.3    1.5  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
  ------ inclusion threshold ------
      0.035   14.2   0.1       0.12   12.5   0.0    1.9  2  Fer4_14        4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> DUF659  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.01        60       1      62 [.      80     139 ..      80     150 .. 0.78
   2 !   17.9   0.0   3.5e-07    0.0021      93     152 .]     153     214 ..     148     214 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.01
      DUF659   1 PsseeLrgtlLqeeveeikkkvkeikkswektgcsillDgwtdkkgrslinflvscpkGtvF 62 
                 Ps++++ ++ L+e++e ++ +v e      +++++ +l+ + + +  +lin+++ ++ G++ 
  CCE29805.1  80 PSRKKILEQTLKECFESVEAQVLE--RIKHTEHLNFTLEDTFEYSYPRLINLSLITEGGALL 139
                 999***************999988..455555577777888888888888888888777665 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 3.5e-07
      DUF659  93 nVvqvitdnasnykkagklle..ekyptifwtpcaahclnlmledilklkwvkevlekakki 152
                  + +v t++ + +++ + ll+   +  +if +pc  + l+l ++ il+l+ +k+++ +a++i
  CCE29805.1 153 RINSVTTNTGTTMTSLWALLNtdPRTAHIFTVPCDGRALQLFVNGILSLEPFKSMFLEARMI 214
                 688999**************96556778********************************98 PP

>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3     6e-07    0.0036      24      74 ..     429     479 ..     428     489 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6e-07
                    HHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HH CS
  Dimer_Tnp_hAT  24 ewwkensskyPnlsklardvLsipvssaasErsFstlgkvllesrnslepl 74 
                    ++w  +s++ P ls +a ++L   + s+ sEr+Fs l  ++++  +s  ++
     CCE29805.1 429 NFWLYYSTRAPELSAIALRLLNAVANSVPSERAFSFLNVSYSQDDRSPIRS 479
                    689999*****************************9977777766665555 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     2e-05      0.12      40      78 ..      40      77 ..      15     114 .. 0.77
   2 ?   -2.1   0.0      0.66     4e+03      58      76 ..     375     393 ..     374     401 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2e-05
     Fer4_14 40 dlkkseikiqglvltGGePLhyenkkellklvkrlkeey 78
                +++ + i+ + + ++GG PL  +++++++++ + l+ e 
  CCE29805.1 40 EANPDLIATR-MIICGGHPLNLWEQHDMVNFTNALVPEW 77
                5666777666.99******************99998776 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.66
     Fer4_14  58 PLhyenkkellklvkrlke 76 
                 PLh++ ++ ++++++ +++
  CCE29805.1 375 PLHPAHEDLVIEFLQAVVR 393
                 9*************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3719.77
//
Query:       CCE29806.1  [L=855]
Description: related to seed imbibition protein Sip1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-57  193.8   1.1    1.4e-55  188.4   1.1    2.4  1  Raffinose_syn  Raffinose synthase or seed imbibition protein 
  ------ inclusion threshold ------
      0.087   12.4   0.1       0.14   11.7   0.1    1.3  1  Alpha-amylase  Alpha amylase, catalytic domain


Domain annotation for each model (and alignments):
>> Raffinose_syn  Raffinose synthase or seed imbibition protein Sip1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4   1.1   1.6e-59   1.4e-55     178     585 ..     291     667 ..     218     672 .. 0.78

  Alignments for each domain:
  == domain 1  score: 188.4 bits;  conditional E-value: 1.6e-59
  Raffinose_syn 178 avrvhlntfklleekkl....PkivdkfGwctwdafylevdaegvekGvksledGGvpPkfviiddGwqsiekdedldkdaenvvkegeqlaarlv 269
                    +++v l+tf  l+ +       +  d +G+ctw+++  +++++ + + +++l++       +iidd wqs+++ ++   d     ++ +q+  r +
     CCE29806.1 291 VLNVDLDTFGGLRTRTTarweAEWYDGLGFCTWNSLGEQLSEKKLLEAMRTLAQHKLHITNLIIDDNWQSLDRVGN---D-----QNQAQY--RWL 376
                    5667777776555544311114678999*******************************************99988...2.....333444..888 PP

  Raffinose_syn 270 sikenkkfkkkkskkfiddsgsGlkavvkdlkerfkslddvyvwhalaGywgGvrPeameelksklarpelspglkatmadlavdklveaGlGlvs 365
                    +++       ++         sGlk++v+++   +  + +v vwhal GywgG+ P+++       ar+e s   ++ ++d       +  l +v 
     CCE29806.1 377 EFEAD-----RV------AFPSGLKSIVENILALHPDIRHVLVWHALLGYWGGISPNGT-----IAARFETSIVAQS-KKD-------QPALTIVA 448
                    77532.....22......3469**********************************554.....4466776643333.332.......34577899 PP

  Raffinose_syn 366 PkkvkefydelhsylasaGvdGvkvdvlqiletlaeelGGrvelakayyqalessvaknfndngviasmehnndflflat....kqisivrvsddf 457
                     k v +fyde++++l + G+dGvk dv+ +l+ la+    r +l  +y +  +++ +k+f d   i++m++  ++lf +     +q  +vr sdd+
     CCE29806.1 449 QKDVARFYDEFYAFLVESGIDGVKTDVQVMLDFLAAAP-DRRQLISTYLDEWQKASQKHFGD-KTISCMSQFPQALFHSQptgfHQKRVVRNSDDY 542
                    9*********************************9875.6889*****************77.579***********7532233899********* PP

  Raffinose_syn 458 yprdPasdpqgvywlqgvhivsvaynslflGef.iqPdwdmfqsvhpaaeyhaasraisGgpiyvsdklGkhnfdllkklvlpdGs....ilrarl 548
                    +p++P s        ++ hi   a+n++f+  + + Pdwdmfqs+h  +e+haa+r isGgpiy++d +G+h++ l+k++     s    ilr  +
     CCE29806.1 543 FPNEPNS--------HAWHIWANAHNAIFMRYLdVVPDWDMFQSTHDHSEFHAAARCISGGPIYITDVPGEHDLALVKQMTALTTSgrtiILRPSY 630
                    *******........9**************988789******************************************997654432233566666 PP

  Raffinose_syn 549 yalPtrdslfkdPlrdgesllkifnln....kftGviGvfn 585
                     +         + l dg  llki  +       tG++Gvfn
     CCE29806.1 631 LGSSIH---HYEDLGDG-LLLKIGSFHgasqAGTGILGVFN 667
                    655433...23445555.46777665411113467777777 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.5e-05      0.14     133     204 ..     433     505 ..     420     584 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.5e-05
                    EESSS-TTS-BB-TTTCCCCCCCCC.CCCCCCTTT-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTCC CS
  Alpha-amylase 133 ylhlflkklpdLnteneevrkelkd.vvkfwlekgidGfRlDvvkhvskvealesngeflheftqalnetvas 204
                     + +  k++p L    ++ +   +d  + f++e+gidG   Dv  +++  +a+ +  + + ++  + +++ ++
     CCE29806.1 433 IVAQSKKDQPALTIVAQKDVARFYDeFYAFLVESGIDGVKTDVQVMLDFLAAAPDRRQLISTYLDEWQKASQK 505
                    56678899999999888888888888***********************999977778888877777766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6173.84
//
Query:       CCE29807.1  [L=474]
Description: probable mitochondrial processing peptidase beta chain precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-57  193.7   0.2    3.5e-57  192.6   0.2    1.6  1  Peptidase_M16    Insulinase (Peptidase family M16)
    1.7e-35  122.7   0.0    3.6e-35  121.6   0.0    1.6  1  Peptidase_M16_C  Peptidase M16 inactive domain
  ------ inclusion threshold ------
      0.043   13.5   0.1       0.11   12.2   0.1    1.7  2  Esterase         Putative esterase


Domain annotation for each model (and alignments):
>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.6   0.2   5.8e-61   3.5e-57       2     148 ..      50     196 ..      49     197 .. 0.99

  Alignments for each domain:
  == domain 1  score: 192.6 bits;  conditional E-value: 5.8e-61
                    EEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHS CS
  Peptidase_M16   2 valesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfka 97 
                    va+e++p a+ts+vg+++daGSr+e++++nG+AH+leh+afkgT+++++++l+ e+e++Gg+lnA+tsrentvY+++++++d+++++d+l+d++++
     CCE29807.1  50 VATEHSPWAQTSTVGVWIDAGSRSETNENNGTAHFLEHLAFKGTARRSQQQLELEIENMGGHLNAYTSRENTVYFAKAFNSDVPQCVDILSDILQN 145
                    99********************************************************************************************** PP

                    BTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS-T CS
  Peptidase_M16  98 plleesevererkvvekeveavdaepekvveenlhaaayrekalgrsllgp 148
                    ++lees++erer+v+++e e+v+++ e+vv+++lha+a++ ++lgr++lgp
     CCE29807.1 146 SKLEESAIERERDVILRESEEVEKQVEEVVFDHLHATAFQGQPLGRTILGP 196
                    *************************************************99 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.0   6.1e-39   3.6e-35       1     183 []     202     390 ..     202     390 .. 0.98

  Alignments for each domain:
  == domain 1  score: 121.6 bits;  conditional E-value: 6.1e-39
                      CH-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHT CS
  Peptidase_M16_C   1 sltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskende 94 
                      ++tr +l +++k +Y++++mvl+ +G ++he+lv+l+ek+f++l++s  p ++    +++ a++ +++v+++++    ah++la eg+s+ + e
       CCE29807.1 202 DITRTELTNYIKDNYTADRMVLVGAGGIPHEQLVELAEKHFSGLPSSG-PANQAYLLSKKAADFIGSDVRVRDDTMGAAHVALAVEGVSW-SSE 293
                      59*******************************************999.888999999999*****************************.*** PP

                      THHHHHHHHHHHHSS.........TTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECT.THHHHHHHHHHHHHHHHHHTS-HHHHHH CS
  Peptidase_M16_C  95 ddlalavlntlLggg.........mesrLytnlrekeglaysvsafndsyrdsglfgisatadpe.nveevvevilkelrklkkeglteeeler 178
                      d++   v + + g+            s+L   +  ++ la s+++f++sy+d+gl+gi++++++   ++++v+   +e+ +l+++ ++++e+er
       CCE29807.1 294 DYFTALVTQAIVGNYdkamgnaphQGSKLSGIVH-RHELANSFMSFSTSYSDTGLWGIYLSTNKYtTLDDLVHFSIREWMRLCTD-VGKAEVER 385
                      **********************************.****************************9989999***************.******** PP

                      HHHHH CS
  Peptidase_M16_C 179 aknql 183
                      ak+ql
       CCE29807.1 386 AKAQL 390
                      ***97 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.8e-05      0.11     160     249 ..      39     133 ..      17     135 .. 0.81
   2 ?   -3.1   0.0      0.84     5e+03     154     217 ..     345     406 ..     327     418 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
                 TTCCHHHCC-CCCCHCHHCHTTSEEEEEEEECTTBCCCHTSCHHHH.....HHHHHHHCCHHHHCCCCCCTT-SCCCC--SSHHHHHHHHHHCHH CS
    Esterase 160 eekeawqendpvllakelsaslkalriyldvGtseddlgeqlsvei.....levlarnrelkeqlaargvegedheydGghsweyWraqLiaala 249
                 ++ ++ + + +v+ +++  a+ +++ +++d+G++++  +++  + +     ++ +ar ++++  l++++ +g+ + y++  +  y+ ++++ +++
  CCE29807.1  39 TQTTTLKNGLTVATEHSPWAQTSTVGVWIDAGSRSETNENNGTAHFlehlaFKGTARRSQQQLELEIENMGGHLNAYTSRENTVYFAKAFNSDVP 133
                 555666666677777788889999***********9666666666677766666778888888899************************99876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.84
                 HCHHHC.TTCCHHHCC-CCCCHCHHCHTTSEEEEEEEECTTBCCCHT.SCHHHHHHHHHHHCCHHH CS
    Esterase 154 namWgq.eekeawqendpvllakelsaslkalriyldvGtseddlge.qlsveilevlarnrelke 217
                   +Wg   + +++ + d++++       ++  r   dvG+ e + ++ ql++ il  l ++++ +e
  CCE29807.1 345 TGLWGIyLSTNKYTTLDDLVHF----SIREWMRLCTDVGKAEVERAKaQLKASILLSLDGTTAVAE 406
                 5666665444445555555555....3355566677777777554444777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3454.80
//
Query:       CCE29808.1  [L=260]
Description: related to TFIID and SAGA subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-41  139.8   0.0    6.2e-41  139.3   0.0    1.2  1  TFIID-31kDa  Transcription initiation factor IID, 31kD subuni


Domain annotation for each model (and alignments):
>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.0   3.5e-45   6.2e-41       3     122 .]      52     197 ..      50     197 .. 0.97

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 3.5e-45
  TFIID-31kDa   3 krPrdarlihliLaslgvteyeerVvlqLldfayrytssvLedAkvlaehakkke....................vslddvrlAiqsrlekqfkep.. 78 
                   rPrd rl++l+L+s+gvt+ye+rV+l Lldfayr+tss+L+dA++l+ + + ++                    ++++ v+lAi++rl +qf+++  
   CCE29808.1  52 PRPRDSRLVELLLTSQGVTSYEQRVPLLLLDFAYRHTSSILNDALHLSGDPYVTQagakpsatsgatalaagdapITANGVKLAIAARLGYQFRGGss 149
                  79****************************************************9***************************************9999 PP

  TFIID-31kDa  79 ...ppkelLlelAaerNkipLpkvkek.lgirLPperycltavnyqlk 122
                     ++k++++elA+erNk++Lp++ ++ +g+rLP+er++l++++++lk
   CCE29808.1 150 gggISKDYMQELARERNKVALPRIVPNeWGVRLPSERFVLSGTSWGLK 197
                  999********************98888*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1932.20
//
Query:       CCE29809.1  [L=863]
Description: probable histidine biosynthesis trifunctional protein (his-3) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.5e-159  528.9   4.8   1.1e-158  528.5   4.8    1.2  1  Histidinol_dh  Histidinol dehydrogenase
    6.3e-24   83.6   0.1    1.3e-23   82.6   0.1    1.5  1  PRA-CH         Phosphoribosyl-AMP cyclohydrolase
    9.5e-12   45.2   0.3    2.9e-11   43.6   0.3    1.9  1  PRA-PH         Phosphoribosyl-ATP pyrophosphohydrolase
  ------ inclusion threshold ------
      0.032   14.5   1.6       0.99    9.7   0.4    3.1  3  Phasin_2       Phasin protein
       0.15   11.2   0.0       0.24   10.6   0.0    1.2  1  Cas_Csx9       CRISPR-associated protein (Cas_Csx9)


Domain annotation for each model (and alignments):
>> Histidinol_dh  Histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  528.5   4.8  3.2e-162  1.1e-158       5     409 .]     448     857 ..     443     857 .. 0.95

  Alignments for each domain:
  == domain 1  score: 528.5 bits;  conditional E-value: 3.2e-162
                    ----HHHHHHHHHHHHHHHHHCHHHHHHHHHHCCSSSSGGCCEE-HHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHCC----EEEEEECTTEEEEE CS
  Histidinol_dh   5 eedseeveetvkeiledvreeGdealleytekFDkvkkleslrvseeeieealekldeelkealeeaaenirkfheaqkeseeevketepgvvlgq 100
                    +++ e++ + v++i++dvr++Gd+all+yt+kF+k+++l +  v ++ + + l +ld+e+ +a+++++eni+kfh+aq+e++   +et+pgv++g+
     CCE29809.1 448 QKSPEAILKIVTPIIDDVRKNGDKALLSYTHKFEKATSL-TSPVIKAPFPKELMQLDAETIKAIDTSFENIKKFHAAQREDKPLEVETMPGVICGR 542
                    344457999*************************87533.35677789999****************************9666666********** PP

                    EEEE-SEEEEE---STT--CHHHHHHHHHHHHHT-SEEEEEE-SS.GG.--HHHHHHHHHCT-SEEEE--HHHHHHHHHH--SSS---SEEE---S CS
  Histidinol_dh 101 kvrpiervGlYvPgGkaaypStvlmnavpAkvAgvkeivvvtPpq.dgkvnpavlaaaklagvdeiykvGGaqAiaalAyGtesipkvdkivGPGn 195
                     +rpiervGlY+PgG+a++pSt++m++vpA vAg++++v+++Pp+ dg+++p+++++a+++g+++i+ +GGaqA+aa+AyGtes++kvdki+GPGn
     CCE29809.1 543 FTRPIERVGLYIPGGTAVLPSTAMMLGVPAMVAGCQKLVLASPPRsDGSITPEIVYVAHKVGAESIVLAGGAQAVAAMAYGTESVSKVDKILGPGN 638
                    ************************************************************************************************ PP

                    HHHHHHHHHHCTT....BEES----S-EEEEEE-TTS-HHHHHHHHHHHHTT-TT-EEEEEE..S-HHHHHHHHHHHHHHHCC-TTHHHHHHHHCC CS
  Histidinol_dh 196 iyVaaAKrlvsge....vgiDmiaGPsEvlviaDetadpefvAaDLlsqaEHdedaqavlvt..tseelaeaveeevekqleelprkeiaekslek 285
                    ++V+aAK++vs++    v+iDm+aGPsEvlv+aD++a p+fvA+DLlsqaEH+ d+q++l+t   s+e ++a+++e+++q+ +lpr +i++ ++++
     CCE29809.1 639 QFVTAAKMHVSNDtnagVSIDMPAGPSEVLVVADKDAIPAFVASDLLSQAEHGVDSQVILITvgLSDEQLAAIDDEIHAQAMTLPRVDIVRGAIAH 734
                    **********5544678*******************************************9633699***************************** PP

                    H-EEEE-SSHHHHHHHHHHH--SEEEEESTTHHHHGGG--S-SEEEESTT--HHHHHHTSSS------TTGGGT---S-GGGGEEEEEEEEE-HHH CS
  Histidinol_dh 286 qsaiilvedleeaielaneyApEHlelqvedpeellekiknaGaiflGeyspeslgDYaaGtnhvLPTsgtArfssglsvedFlkkisvqelskea 381
                     s++++ve++eea++++neyApEHl+lq++d++++++++ naG++f+G+++pes+gDY aG nh LPT+g+A+++sg+++++F+k+i++ +l++++
     CCE29809.1 735 -SVTVCVETMEEAMRISNEYAPEHLILQINDAAKTVDQVMNAGSVFIGQWTPESVGDYSAGVNHSLPTYGFAKQYSGVNLASFMKHITCSNLTPQG 829
                    .*********************************************************************************************** PP

                    HHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Histidinol_dh 382 lkelaeavetlAeaEgLeaHaeavkvRl 409
                    l+++++av++lA++E+LeaH++av++Rl
     CCE29809.1 830 LANVGSAVMQLAKVEELEAHRRAVEIRL 857
                    **************************96 PP

>> PRA-CH  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.1   3.5e-27   1.3e-23       2      73 ..     220     290 ..     219     291 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 3.5e-27
                 EEEE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-SSTTSBSSS- CS
      PRA-CH   2 laymnkealektletgkavyySrsrkklWkKGetSgnvqkvkeirlDcDqDalllkveqkgaaCHtgkesCF 73 
                 lay+++e++ ++l+t++ vy+Sr+r  lW KG+tSg++q+++++ lDcD+D+l + v+qkg +CH+++  CF
  CCE29809.1 220 LAYTSNESILEALKTQTGVYQSRKR-GLWIKGATSGDTQQLVRVALDCDNDTLKFIVKQKGRFCHLQQFGCF 290
                 79***********************.9********************************************* PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.3   8.2e-15   2.9e-11       3      81 ..     298     377 ..     296     379 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 8.2e-15
                 HHHHHCT----SS----.-HHHHHH...HHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHCT--CHHHHHHHHH CS
      PRA-PH   3 efhrligerkpetPeas.taelasl...raaligEEavElleaasegdlaeladelaDllYvtygllvllGidldavfeevhr 81 
                  +++++  rk+++Pe+s ta+l+s+   ++a+i+EEa+El++a    + +e+a e+aDl+Y+++  +  +G +l ++ ++++ 
  CCE29809.1 298 ALEQTLLSRKQSAPEGSyTARLFSDeklLRAKIMEEAEELCDAK---TPQEVAFEAADLIYFALTKAISAGASLADIEANLDA 377
                 58999***************************************...8*****************************999875 PP

>> Phasin_2  Phasin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.4   0.00028      0.99      43      95 ..     330     382 ..     326     385 .. 0.92
   2 ?    2.0   0.0     0.071   2.6e+02       8      80 ..     448     519 ..     441     524 .. 0.79
   3 ?   -2.1   0.0       1.3   4.6e+03      53      72 ..     740     759 ..     736     777 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00028
    Phasin_2  43 slaaakallsakdpqellelqselaqpalekavayarklaelaaktqeeaakl 95 
                  ++ a++l +ak+pqe++   ++l+  al+ka++   +la++ a++ ++  k+
  CCE29809.1 330 IMEEAEELCDAKTPQEVAFEAADLIYFALTKAISAGASLADIEANLDAKSLKV 382
                 5889**************************************99998888876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.071
    Phasin_2   8 kknlealealaslalegaeklaelqleaarasleeslaaakallsakdpqellelqselaqpalekavayark 80 
                 +k  ea+ ++ +   + + k  +++l    + +e++++ +  +++a  p+el++l +e++++ +++ +++ +k
  CCE29809.1 448 QKSPEAILKIVTPIIDDVRKNGDKALLSYTHKFEKATSLTSPVIKAPFPKELMQLDAETIKA-IDTSFENIKK 519
                 666677777777777888888888888888889999999999999999**********9986.4666666666 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.3
    Phasin_2  53 akdpqellelqselaqpale 72 
                 +++++e++++ +e+a + l 
  CCE29809.1 740 VETMEEAMRISNEYAPEHLI 759
                 56778888888888766544 PP

>> Cas_Csx9  CRISPR-associated protein (Cas_Csx9)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.7e-05      0.24      89     138 ..     206     258 ..     187     287 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.7e-05
    Cas_Csx9  89 lstiktdkngtylgiayngeqailpaiikqpeyye.rqsgfl..spttgqkaq 138
                 + t+ td+ g  lg+ay  +++il a+  q   y+ r+ g+     t+g+  q
  CCE29809.1 206 IPTVVTDEAGVALGLAYTSNESILEALKTQTGVYQsRKRGLWikGATSGDTQQ 258
                 46999**********************99987664277775411345555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 6191.94
//
Query:       CCE29810.1  [L=772]
Description: related to SMP2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-93  312.0   0.0      3e-93  311.5   0.0    1.2  1  LNS2             LNS2 (Lipin/Ned1/Smp2)
    3.5e-43  145.7   0.0    8.7e-43  144.5   0.0    1.7  1  Lipin_N          lipin, N-terminal conserved region
    0.00047   19.8   0.0       0.58    9.7   0.0    2.7  3  Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosph


Domain annotation for each model (and alignments):
>> LNS2  LNS2 (Lipin/Ned1/Smp2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.5   0.0     5e-97     3e-93       1     226 []     380     602 ..     380     602 .. 0.99

  Alignments for each domain:
  == domain 1  score: 311.5 bits;  conditional E-value: 5e-97
        LNS2   1 kslrltseqlkslnLkeGkneieFsvttklqgtaeveakiylwksddkivisdidgtitksdvlGhilpllgkdwthkgvaklyskikengYkilylsa 99 
                 k+lrlts+qlk+l+L++G+n+++F+v+      a+++a+++lwk+++ +visdidgtitksd+lGh+l+++g+dwth+g+aklys+i++ngY+i+yl++
  CCE29810.1 380 KTLRLTSDQLKALELRHGENSMSFTVNR-----ATCSANMFLWKHETPVVISDIDGTITKSDALGHVLNMIGRDWTHTGIAKLYSDIAQNGYNIMYLTS 473
                 79************************95.....99**************************************************************** PP

        LNS2 100 raigqaeltreylksveqdgvkLPkgPvllspdrllsalkreviekkpeefkiacLkdikklfpeeknpfyagfGnritdvisYkavgvpksriftinp 198
                 r++gqa++tr y++ v q g++LP+gP +lspdr+++al+rev+ ++p++fk+a+L+di++l+  +++pfyagfGnr td isY++v+vp++riftin+
  CCE29810.1 474 RSVGQADTTRAYVNGVVQGGCRLPHGPTILSPDRTMAALRREVYLRQPHVFKMATLRDISSLYGPDHSPFYAGFGNRLTDQISYRTVDVPRTRIFTINS 572
                 *************************************************************************************************** PP

        LNS2 199 kgelkee..llkklkssyeslselvdkiFP 226
                 ++e++ +  +l+klk sy +++e+vd++FP
  CCE29810.1 573 NSEVSLDllSLNKLKMSYVNINEVVDHYFP 602
                 ****999778999****************9 PP

>> Lipin_N  lipin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   0.0   1.5e-46   8.7e-43       1     102 []       1     100 [.       1     100 [. 0.99

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 1.5e-46
     Lipin_N   1 mnyvgkvlssvkelykeinpatlsGaiDvivveqedgelkcspfhvrFgklkvlrskekvvdievNgeevdlkmklgeaGeafFveeteeeeevpeela 99 
                 m+yv+++ +sv++ +++inpatlsGaiDvivv+++dg+l+cspfhvrFgk+++lr++ek+v+++vNg + d++mklge GeafFv+et  +++vpe+l+
  CCE29810.1   1 MQYVRNLSDSVSTAWNSINPATLSGAIDVIVVQHDDGTLACSPFHVRFGKFSLLRPSEKKVEFKVNGVKQDYSMKLGEGGEAFFVFET--TDNVPESLQ 97 
                 9***************************************************************************************..99******* PP

     Lipin_N 100 tsp 102
                 tsp
  CCE29810.1  98 TSP 100
                 *98 PP

>> Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosphatase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.4   2.4e+03      48      92 ..       3      46 ..       1      86 [. 0.57
   2 !    6.8   0.0   0.00075       4.5      37      84 ..     386     432 ..     370     437 .. 0.80
   3 !    9.7   0.0   9.7e-05      0.58     121     149 ..     454     482 ..     445     489 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.4
                     HCHHHHHHHHHHHHHHCTHHHHTTSEEEEEE--BTTTEEHHHHHH CS
  Acid_phosphat_B 48 yssdskavvdqaynsakeaelkadkkdavvfDiDeTvLsnspYqk 92
                     y+++ +  v  a ns + a+l++  +d++v+  D+  L  sp++ 
       CCE29810.1  3 YVRNLSDSVSTAWNSINPATLSG-AIDVIVVQHDDGTLACSPFHV 46
                     55555556666666666666555.788888888888888888832 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00075
                      HHCCHHHCCHHHCHHHHHHHHHHHHHHCTHHHHTTSEEEEEE--BTTT CS
  Acid_phosphat_B  37 aeqvkevtieqyssdskavvdqaynsakeaelkadkkdavvfDiDeTv 84 
                       +q k +++ + ++ ++ +v++a+ sa++   k+ + ++v+ DiD T+
       CCE29810.1 386 SDQLKALELRHGENSMSFTVNRATCSANMFLWKH-ETPVVISDIDGTI 432
                      455555778888888999************9777.999*********8 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 9.7e-05
                      HHHHHHHHHHTTEEEEEEEEEECCCHHHH CS
  Acid_phosphat_B 121 alelikkvverGvkiffvsgRseeqkaaT 149
                        +l+  + ++G++i++++ Rs  q + T
       CCE29810.1 454 IAKLYSDIAQNGYNIMYLTSRSVGQADTT 482
                      5689*******************988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 5232.89
//
Query:       CCE29811.1  [L=1012]
Description: uncharacterized protein CPUR_03658 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-21   77.6   0.0    2.9e-21   76.2   0.0    1.7  2  CHAT      CHAT domain


Domain annotation for each model (and alignments):
>> CHAT  CHAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.32   5.8e+03     185     220 ..     198     231 ..     187     237 .. 0.72
   2 !   76.2   0.0   1.6e-25   2.9e-21       9     289 ..     718    1005 ..     712    1006 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.32
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CHAT 185 lnldgaelVvLsACqtglgevidgegvlgLaralll 220
                 l+++ a++ +Ls C t  g+  +g+   +L ++ ++
  CCE29811.1 198 LKWPDASHHTLSLCTTLYGDLEGGD--NRLHQGIAA 231
                 6888899999999*99999775544..345555555 PP

  == domain 2  score: 76.2 bits;  conditional E-value: 1.6e-25
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxx RF
        CHAT    9 dlliaPleaeldgqsvrqlvivpdgeLqliPfealvdpdgrylleryavsyapsarllselrkaaasaasalqlvvgdpkfdaa.......ellrkl 98  
                  d+l+aPl+++  +q+   lv++p g L++iP++al+ p++  ller  ++y  s++++ +++ +a+++a a   v   p++d++          rk 
  CCE29811.1  718 DALVAPLQRQ--SQPGDLLVLLPAGILHSIPLHALWLPSRMLLLERNPIVYSDSLTTFWQCCTRAKRTAMA---VCRLPRCDRDrewaftgVYERKR 809 
                  5778898888..58889**********************9***************************9997...89999999886677766333333 PP

                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx RF
        CHAT   99 vfpelpgteaE.aeaiakllaegelkvllgeaatesalksalsrryrvvHfatHgvfnanpplqsglvlsaenseedglLtaeeilelnldg..ael 192 
                        ++++E  + i+++ +  ++   +g  ++++ +++al +r +++ f +   +++   ++ gl l        g L++ ++l++ l++  + l
  CCE29811.1  810 GRTFYADEQTEtYSFISRTAEGINSSWATGTGVRKTWVRNAL-ERSSLFLFLGKFDVEDTYIEEQGLEL------GRGMLKMGDVLNMTLQAphVGL 899 
                  3344556666667888888888888*****************.***************9999*******......799*************999999 PP

                  xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxx RF
        CHAT  193 VvLsACqtglgevidgegvlg....LaralllaGarsviaslwpVddeatalLmkrfyqnlla..........glskaeALreaqlkllsgkrdqkp 275 
                  V L + ++g + + ++ +v      ++ra+l+ Ga sv+as wp++ +  ++++ ++y  + +            ++ae +r+a l+l+s  ++   
  CCE29811.1  900 VELDSAEQGKSCN-KASDVPPpgimMTRAFLWGGAGSVVASMWPTSPRVGRQFVSEMYGDMVEehrrscrepaVVDLAEKMRRAVLALRSRVET--- 992 
                  9999999996655.44444445677**************************************999999998888999999******9999885... PP

                  xxxxxxxxxxxxxx RF
        CHAT  276 shapyyWaaFiliG 289 
                   ++py+Wa+F l G
  CCE29811.1  993 -RQPYHWAGFALHG 1005
                  .55*******9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1012 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 6900.12
//
Query:       CCE29812.1  [L=1134]
Description: uncharacterized protein CPUR_03659 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00093   19.5   0.0      0.003   17.9   0.0    1.9  1  fn3       Fibronectin type III domain
  ------ inclusion threshold ------
       0.26   11.4   9.1        4.4    7.4   2.9    3.2  2  DUF1192   Protein of unknown function (DUF1192)
        8.5    4.6  49.3       0.17   10.2  41.7    1.8  1  MAD       Mitotic checkpoint protein


Domain annotation for each model (and alignments):
>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.9e-07     0.003       7      79 ..     111     176 ..     105     182 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.9e-07
                 EEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTSTEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETS CS
         fn3   7 svsevtstsltvsWeppkdgggpitgYeveyrekgseeewneftvprtttsvtltgLkpgteYevrVqavngg 79 
                  +  ++s+ +t+ W +p + ++   +Y +++  ++ +e      +++++   t+tgLkp+  Y++rV av ++
  CCE29812.1 111 CLAGIRSDAATLAWARP-HSQRLAPQYLIQVNGVQVGE------ATGSEAGITITGLKPNHFYNIRVVAVGHN 176
                 56678899999999999.68888889999888887776......77888899*****************9766 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.4    0.0024        14      20      49 ..     288     317 ..     284     321 .. 0.86
   2 ?    7.4   2.9   0.00074       4.4      25      51 ..     381     407 ..     378     411 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0024
     DUF1192  20 LSveELeerIalLeaEIaRleaaiakkkas 49 
                 +S++EL++  +  ++EI+++ +  ak +a 
  CCE29812.1 288 MSLQELNQKFENTRKEIEMTVQIAAKEQAD 317
                 89*****************99877777764 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00074
     DUF1192  25 LeerIalLeaEIaRleaaiakkkasra 51 
                 ++e Ia L  EI+R++++++  +a+++
  CCE29812.1 381 IRESIARLDNEIERMKRERQGFQAQKK 407
                 7899***************99988874 PP

>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  41.7   2.9e-05      0.17      10     172 ..     289     455 ..     281     462 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 2.9e-05
         MAD  10 aleqlknelkqkelehkrarielekkasalkrqleeesdrnqelqkrikllekre.eekeealreqiElarlkkknlealnkkekekesklaearevis 107
                 +l++l++  +   +e ++    + k+ +a + q eee +++++ ++++ + ++++ ++ ++  r ++E+ r+++k  ++ ++++k+k+sk++++re i 
  CCE29812.1 289 SLQELNQKFENTRKEIEMTVQIAAKE-QADAAQQEEELKKERDQKRQVLKEKEEQtTQLKALIRSTMEMMRTTEKERQKKEQLLKDKQSKETKIRESIA 386
                 55556665555555555554444444.668888899999999999887555444426667778************************************ PP

         MAD 108 alknelaelkrq...iekqelelseke.seleelqerldllkkklseleqliqqlekkqkelaeaeqri 172
                  l ne++++kr+    + q+ el ek+ ++++ l e   ll++k++ le   ++  k+ + l+++ +r+
  CCE29812.1 387 RLDNEIERMKRErqgFQAQKKELAEKRdHDVQGLDESTALLQEKCTALEADLKDRGKQLQLLKAERERL 455
                 *******99887333578999998775389**********************99999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2724  (0.151933); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.37u 0.35s 00:00:01.72 Elapsed: 00:00:00.57
# Mc/sec: 6011.27
//
Query:       CCE29813.1  [L=1213]
Description: related to subunit of VP52-54 complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.2e-102  343.8   2.0   1.9e-102  343.1   2.0    1.3  1  Vps53_N        Vps53-like, N-terminal
    3.2e-48  164.5   1.3    5.4e-48  163.7   1.3    1.4  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    2.6e-17   63.0   0.4    3.8e-16   59.2   0.0    2.3  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      9e-16   58.2   0.5    5.4e-14   52.5   0.1    2.9  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    3.1e-07   30.0   8.1    5.3e-07   29.2   8.1    1.3  1  Vps54_N        Vacuolar-sorting protein 54, of GARP complex
    2.7e-05   24.1   0.1    7.7e-05   22.6   0.1    1.8  1  DUF2451        Protein of unknown function C-terminus (DUF245
    0.00031   21.2   0.1      0.039   14.4   0.0    2.8  2  NAD_binding_7  Putative NAD(P)-binding
    0.00037   19.2   5.2     0.0006   18.5   5.2    1.2  1  Zw10           Centromere/kinetochore Zw10
    0.00075   18.8   0.0     0.0018   17.5   0.0    1.6  1  Thi4           Thi4 family
     0.0014   17.6   3.3     0.0095   14.9   0.0    2.8  3  RINT1_TIP1     RINT-1 / TIP-1 family
  ------ inclusion threshold ------
      0.022   13.9   0.1        1.2    8.2   0.0    2.9  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
      0.055   12.4   6.9      0.037   12.9   5.0    1.6  1  Spc7           Spc7 kinetochore protein
      0.058   12.7   4.3       0.12   11.7   4.3    1.5  1  DUF3450        Protein of unknown function (DUF3450)
      0.078   12.3   0.6       0.28   10.5   0.0    2.1  2  FAD_oxidored   FAD dependent oxidoreductase
       0.16   12.1   0.1         33    4.5   0.0    2.7  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
        0.2   11.9   4.1       0.72   10.1   0.9    2.7  2  DUF5082        Domain of unknown function (DUF5082)
       0.22   10.6   4.0        1.9    7.5   0.3    3.7  4  GIDA           Glucose inhibited division protein A
       0.28   11.5   0.0       0.28   11.5   0.0    3.1  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
       0.46   10.5   1.9       0.56   10.3   0.5    1.9  1  DUF1664        Protein of unknown function (DUF1664)
       0.77    9.9   8.1         14    5.8   4.4    3.4  2  COG2           COG (conserved oligomeric Golgi) complex compo


Domain annotation for each model (and alignments):
>> Vps53_N  Vps53-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.1   2.0  2.1e-105  1.9e-102       2     374 ..      13     388 ..      12     392 .. 0.94

  Alignments for each domain:
  == domain 1  score: 343.1 bits;  conditional E-value: 2.1e-105
     Vps53_N   2 adfsaleyinellpteqslanidelikklqeeikklddeiksvvraqanvgekgkealeeaqkaieelfqkikeikdkaekseemvkeitrdIkqLDiA 100
                 ++++++e++n l+ +  ++  i+++ + l+ + + l  ei++++ +qa   + + e ++ aq+ + +lf+ki++++++a ++e+ +  +t +Ik+LD  
  CCE29813.1  13 VNYDPMEHLNMLFSHPSAVSSINQVSQTLRAHYSVLSSEINTLELEQAYKPDSSLERMQAAQTELAQLFRKIETVRSRALETEQNITSMTAEIKRLDGT 111
                 689************************************************************************************************ PP

     Vps53_N 101 KknlttsiTtlkrLkmLvtavesleallskrsykeivsllqavlqllnhFekYkdvekIaeLsesisklkkslksqiledfkeaFssgsqkeketgnll 199
                 K+nlt s+T+lkrL+mL+ta+e+l+ l++ r+y e + llqavlql++hF++Y+++e+Ia Ls+++s+l+++l +q+ edf+ aF  ++++        
  CCE29813.1 112 KRNLTLSMTALKRLQMLTTAYEQLRGLAKTRQYRECAGLLQAVLQLMKHFNSYRSIEQIATLSREVSELQRELLEQVCEDFEMAFVKSEIGA-----KK 205
                 *************************************************************************************5555544.....55 PP

     Vps53_N 200 ekledaCrvvdildpsvkeelikwfiekqLeeykkifreneeaasLdkldrRYawlkrklqdfeekykkiFpadWevaeRltveFckvTrkdlekilkr 298
                 ++l +aC+v+d+l +s k  +i w+i+ +L ey ++fr  +ea+sLd+++rRYaw++r ++++e+  ++iFp  W+v e l++ Fc  Tr+d + il+r
  CCE29813.1 206 NTLVEACLVMDALGASAKSRIITWYINTKLREYRHVFRGSDEAGSLDNISRRYAWFRRMMKTHEHDDANIFPSYWHVGELLATAFCDGTREDYKGILER 304
                 669*********************************************************************************************998 PP

     Vps53_N 299 .....kkkelsvkllllalqsTleFEklldkrFsnt...iskakkkkekkelafegaisscFephltlyiesqektlsellekf 374
                        ++l+v+lll  lq+Tl+FE+ ++k+Fsn+      + + +e k+ +f+g is  Fep+l l++es++k+l  ++ k+
  CCE29813.1 305 slrrgDGNKLDVNLLLSCLQETLDFEQSIEKKFSNEpraSIDTLSSTEGKTHNFNGLISVAFEPYLSLWVESHDKQLAGMIPKY 388
                 875444689************************76521134455778999999************************9888776 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   1.3     6e-51   5.4e-48       2     292 ..     898    1196 ..     897    1198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 6e-51
                   SEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH.........HHHHCHHHHCCCCHCCTCEEEEESCEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2    2 dvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias.........evvkklnqgielllgeevvkidpgkkkv 85  
                   +vv+iG+GpA+++aa +la+a++k +l+e   ++g   +g+   ++++++++++++ +             ++ + g e +++ +v ++d  ++ +
   CCE29813.1  898 KVVIIGSGPAAHTAAVYLARAELKPVLYEgfmANGIAAGGQLTTTTEVENFPGFPKGIMgqelmdnmkA--QSERFGTEIITD-TVHTLDLSARPF 990 
                   8***************************99*9************************9999*99988643..444555556666.899********* PP

                   EETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   86 klekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllral 181 
                   k++++  +  e+ ++d++++AtG+s+r++++ G+ ++++ ++++++ +++     ++k + v+GgG  + E A +l+k+g++vt++ +rd l    
   CCE29813.1  991 KYTTEF-SPDETHTADSVIIATGASARRMNLTGEDKYWQNGISACAVCDGALPLFRNKPLYVIGGGDSAAEEATFLTKYGSHVTVLVRRDALR--- 1082
                   **9888.5668*********************************************************************************7... PP

                   -HHHHHHHHHHHHHT.TEEEEESCEEEEEEETTE.......EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSB.ES CS
                   xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.......xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
  Pyr_redox_2  182 dkelsaaleealeke.Gvevklgtsvkeidgnge.......kle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflr.tn 267 
                      +s++++ +l k+ +v+v+++t+++ei+g ++        ++ +v +++e+++a  +++a+G  p t+l+  k ++ +d +g+iv+++    t+
   CCE29813.1 1083 ---ASKTMATRLLKHdKVTVRFNTVATEIRGSESdglmshlVVKdTVSGKEEVVEANGLFYAIGHDPATKLV--KGQVDMDADGYIVTKPGTTlTS 1173
                   ...6777666666666********************99887566899999999******************5..99**************995388 PP

                   STTEEE-GGGCTECCSS--HHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  268 vpgiyaiGDvaggkggpelaqaAvq 292 
                   v+g++a+GDv+  ++++++a ++  
   CCE29813.1 1174 VEGVFAAGDVQ--DKRYRQAITSAG 1196
                   ***********..777777776655 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.17   1.6e+02       1      23 [.     900     922 ..     890     933 .. 0.77
   2 !   59.2   0.0   4.2e-19   3.8e-16     120     305 .]     999    1181 ..     950    1181 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.17
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagled 23 
                  +IiG GPa  +aa+ l +a+l+ 
   CCE29813.1 900 VIIGSGPAAHTAAVYLARAELKP 922
                  67888888888888777777754 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 4.2e-19
  Pyr_redox_3  120 ketyeAkkviiAtGefdkPnklnipGeek...lvkhyskvk..efhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsysl 210 
                    et +A++viiAtG     +++n  Ge+k   + +    v   ++  ++++ + ViGg++Sa++ A+ l ++g++Vtv++r++ +++++       
   CCE29813.1  999 DETHTADSVIIATGA--SARRMNLTGEDKywqNGISACAVCdgALPLFRNKPLYVIGGGDSAAEEATFLTKYGSHVTVLVRRDALRASK------- 1085
                   36899*********9..99*********844344555555322555688999******************************9888875....... PP

  Pyr_redox_3  211 kpdienrleelvkeekikvlfnaevkeikekeee.....ykvk..tedgkkvevkddvvlatGykpdlsflkkslfeldedgrpvlteeteetnvp 299 
                     ++  rl   +k++k++v fn+ ++ei+ +e+        vk   + +++v + +  ++a+G +p ++++k  +++ d+dg++v ++ t  t v+
   CCE29813.1 1086 --TMATRL---LKHDKVTVRFNTVATEIRGSESDglmshLVVKdtVSGKEEVVEANGLFYAIGHDPATKLVK-GQVDMDADGYIVTKPGTTLTSVE 1175
                   ..334444...345678888888888887554431111122223244556677789999************9.999******************** PP

  Pyr_redox_3  300 glflaG 305 
                   g+f aG
   CCE29813.1 1176 GVFAAG 1181
                   ****99 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.21   1.9e+02       1      22 [.     898     919 ..     898     926 .. 0.87
   2 !   52.5   0.1   6.1e-17   5.4e-14       3      79 ..    1050    1123 ..    1048    1127 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.21
                 EEEEECSSHHHHHHHHHHHHTT CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelg 22 
                 kvv++G+G  +  +A +la+  
  CCE29813.1 898 KVVIIGSGPAAHTAAVYLARAE 919
                 79**************999866 PP

  == domain 2  score: 52.5 bits;  conditional E-value: 6.1e-17
                  EEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEEETT.S.EEEEEEE CS
   Pyr_redox    3 vvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekn.gievllntkveeiegsed.g.vesvklk 79  
                   v+GgG+++ E+A++l+++g++Vtv++r+d l+      ask ++++l k+ +++v++nt+++ei+gse+ g ++++++k
  CCE29813.1 1050 YVIGGGDSAAEEATFLTKYGSHVTVLVRRDALR------ASKTMATRLLKHdKVTVRFNTVATEIRGSESdGlMSHLVVK 1123
                  69*******************************......9999988886666**************88762566666665 PP

>> Vps54_N  Vacuolar-sorting protein 54, of GARP complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   8.1   5.9e-10   5.3e-07      13     196 ..      15     193 ..       7     200 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 5.9e-10
     Vps54_N  13 fdpikyeLkklpddelsyesiekevkklksqhdvvskklsqlilekreefvkelseveeiekelkesvvickngrraLdlakkeltrtsLellakskkr 111
                 +dp+++ L+ l  +  +++si++ +++l++   v+s+ +++l le+  + ++ l++++  + el +  +++++ r+    +++++t +  e+      +
  CCE29813.1  15 YDPMEH-LNMLFSHPSAVSSINQVSQTLRAHYSVLSSEINTLELEQAYKPDSSLERMQAAQTELAQLFRKIETVRSRALETEQNITSMTAEIKRLDGTK 112
                 566665.666666668999********************************************************999999999999999998766555 PP

     Vps54_N 112 qllkkllktltaikelrelekrleelleeedysaAiqllletkqlaekysqyncvqelssklqetlelveekldsqLsevckeFd 196
                   l+  ++ l+ ++ l ++ ++l+ l +  +y +   ll  + ql+++++ y++++++ +   e++el  e     L++vc++F+
  CCE29813.1 113 RNLTLSMTALKRLQMLTTAYEQLRGLAKTRQYRECAGLLQAVLQLMKHFNSYRSIEQIATLSREVSELQRE----LLEQVCEDFE 193
                 555555578***********************************************997655555444433....3566777776 PP

>> DUF2451  Protein of unknown function C-terminus (DUF2451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   8.6e-08   7.7e-05      70     174 ..     530     630 ..     431     635 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 8.6e-08
     DUF2451  70 eslleaianvkWdvkevatehssYvdqllkevesfskklqelkerlklpeevkkalweaavevvtetLvegyskvkkcseeGRalMqlDvqqllaklek 168
                 e    ++ n++W   +++ ++ssYv +l+++v+  + ++  l+++    ++   a+ +++ve +++++++   + + +se G  +M++D  +l++ + k
  CCE29813.1 530 EATWREMRNTNWSAMDISGDQSSYVGELIRHVNAKTAEILGLVTK----QQYARAFCDKLVEHLAQAFLSSIVQCRPISEVGAQQMLVDKYALTKSFGK 624
                 567789***************************966666664444....44445666666666677777777789***************999999999 PP

     DUF2451 169 lskiks 174
                 l ++++
  CCE29813.1 625 LLSLQN 630
                 988764 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.11        99       8      40 ..     897     929 ..     894    1023 .. 0.59
   2 !   14.4   0.0   4.4e-05     0.039       5      40 ..    1044    1079 ..    1043    1145 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.11
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvvapev 40 
                     kv+++G G+ A + +  l++a+ k +++   +
     CCE29813.1 897 SKVVIIGSGPAAHTAAVYLARAELKPVLYEGFM 929
                    589**************9999999988855444 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.4e-05
  NAD_binding_7    5 lkgkkvlvvGgGevAarkvrklleagakvtvvapev 40  
                     +++k   v+GgG+ Aa+ +  l ++g +vtv+  + 
     CCE29813.1 1044 FRNKPLYVIGGGDSAAEEATFLTKYGSHVTVLVRRD 1079
                     678999*************************77663 PP

>> Zw10  Centromere/kinetochore Zw10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   5.2   6.7e-07    0.0006      29     178 ..      36     197 ..      26     220 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.7e-07
        Zw10  29 evskmivkkYsef........lelsssaeellerveslskeidalkkkven...eieqdlkaaveelaelkq...qlkekevvlellealkkieealee 113
                 +vs+++ ++Ys +        le    ++  ler++  + e  +l +k+e+     ++++++ + + ae+k+     ++ ++++  l++l+ + +a e+
  CCE29813.1  36 QVSQTLRAHYSVLsseintleLEQAYKPDSSLERMQAAQTELAQLFRKIETvrsRALETEQNITSMTAEIKRldgTKRNLTLSMTALKRLQMLTTAYEQ 134
                 5667777777744433355444444556677777777777777777777663333334444445555555542227788899999************** PP

        Zw10 114 lkealknkaflvaadlleelkslldlekvekafqlkilkalrkelsvlsenlqykLgeewdrlvv 178
                 l+   k+++++++a ll+ + +l++  ++ +   ++ +++l+ e s l+ +l+++  e+++ + v
  CCE29813.1 135 LRGLAKTRQYRECAGLLQAVLQLMKHFNSYR--SIEQIATLSREVSELQRELLEQVCEDFEMAFV 197
                 ********************99998888874..466678*********************98866 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     2e-06    0.0018      16      64 ..     895     940 ..     890     949 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2e-06
                 TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTB CS
        Thi4  16 aesDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlf 64 
                 + s vvi+G+G++  taa yla++ +lk ++ e  ++   G+  GGql 
  CCE29813.1 895 MHSKVVIIGSGPAAHTAAVYLARA-ELKPVLYEGFMAN--GIAAGGQLT 940
                 6799********************.********99987..577788875 PP

>> RINT1_TIP1  RINT-1 / TIP-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3       1.2     1e+03     174     200 ..     116     142 ..      27     190 .. 0.59
   2 ?    2.4   0.0     0.064        57      92     127 ..     315     350 ..     236     451 .. 0.77
   3 !   14.9   0.0   1.1e-05    0.0095     348     439 ..     531     627 ..     520     635 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
  RINT1_TIP1 174 kptksavrvvdLLesiteryeplssfs 200
                   + +a +  ++L + +e+++ l + +
  CCE29813.1 116 TLSMTALKRLQMLTTAYEQLRGLAKTR 142
                 333333333444444444444444433 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.064
  RINT1_TIP1  92 dpalLshlisellsfdkeLrekykYdaeekwkgLts 127
                 d +lL + ++e+l f++ +++k++ +++++ ++L+s
  CCE29813.1 315 DVNLLLSCLQETLDFEQSIEKKFSNEPRASIDTLSS 350
                 55799999***************9995444444443 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 1.1e-05
  RINT1_TIP1 348 sqWsslsssses....slsvsselvellnllkrlldfLekal.skalfrriwrelleklqdllweevllrnkFseaGaaQlarDvealfalvdryik 439
                  +W ++ +++ s    s + ss + el++ ++ +++ +  ++  ++  r   ++l+e l + +++++++ +  se Ga+Q+ +D  al++ +++ ++
  CCE29813.1 531 ATWREMRNTNWSamdiSGDQSSYVGELIRHVNAKTAEILGLVtKQQYARAFCDKLVEHLAQAFLSSIVQCRPISEVGAQQMLVDKYALTKSFGKLLS 627
                 566666666555555566778888888998888887777777255556667899************************************9998875 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.2   1.1e+03     190     208 ..     895     913 ..     886     923 .. 0.66
   2 ?    8.2   0.0    0.0013       1.2     144     231 ..     999    1084 ..     961    1092 .. 0.70
   3 ?    1.7   0.0      0.12   1.1e+02     112     161 ..    1098    1147 ..    1088    1152 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
  K_oxygenase 190 akkriaVvGsGqSaaeife 208
                   + +++++GsG  a   + 
   CCE29813.1 895 MHSKVVIIGSGPAAHTAAV 913
                  5677888888876654444 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0013
  K_oxygenase  144 eeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrsealepl 231 
                    e+++a ++++++G ++   +++ + +  ++ + +  +      l ++k + V+G+G Saae +  l++  +  ++++++r++al+++
   CCE29813.1  999 DETHTADSVIIATGASARRMNLTGEDKYWQNGISACAVCDGALPLFRNKPLYVIGGGDSAAEEATFLTKYGS--HVTVLVRRDALRAS 1084
                   456777777777777776666655555444445444555544457788999***********9999988776..78888999888765 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.12
  K_oxygenase  112 qvrfgeeveevepdeeeee.elltveskdaegeeeelearnlvlgvGtepk 161 
                   +vrf++  +e++ +e+++  ++l v+ ++ +g+ee +ea+ l  ++G  p+
   CCE29813.1 1098 TVRFNTVATEIRGSESDGLmSHLVVK-DTVSGKEEVVEANGLFYAIGHDPA 1147
                   48999999999999998775555555.479999999999999999999885 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   5.0   4.1e-05     0.037     164     258 ..      33     127 ..      29     135 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.1e-05
        Spc7 164 eldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervle 258
                  ++++ + l+++++ l++e+++l+ +++   ++  e++++++ ela+l  +ie  + +  e ++++++ +++i+ l+  k++l   + + +r+++
  CCE29813.1  33 SINQVSQTLRAHYSVLSSEINTLELEQAYKPDSSLERMQAAQTELAQLFRKIETVRSRALETEQNITSMTAEIKRLDGTKRNLTLSMTALKRLQM 127
                 6899************************99***************************************************99999999888876 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.3   0.00013      0.12      17     111 ..      30     127 ..      21     154 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
     DUF3450  17 tldqalkeaekavaaaaqsqkkidklddek....qellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekmidrLeq 111
                 ++++++++++   a  +  +++i+ l+ e+    ++ l++++a+++el++l  + e +++   + eq+i+s++ +i++++ ++r+l+  +   ++rL++
  CCE29813.1  30 AVSSINQVSQTLRAHYSVLSSEINTLELEQaykpDSSLERMQAAQTELAQLFRKIETVRSRALETEQNITSMTAEIKRLDGTKRNLTLSMTA-LKRLQM 127
                 556666677777777777778888888777233346799*************************************************9964.444444 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00031      0.28       2      69 ..     899     966 ..     898     996 .. 0.70
   2 ?   -1.3   0.1       1.1     1e+03      88     136 ..    1083    1135 ..    1072    1138 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00031
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLve....ergvlGGlltsglvatdignkaeeqvvtgiareflerlrq 69 
                   vv++G+gpa  +AA+  ara  k +L e    +    GG+lt       +  + +++  + + +e+++++++
    CCE29813.1 899 VVIIGSGPAAHTAAVYLARAELKPVLYEgfmaNGIAAGGQLTTTT----EVENFPGFPKGIMGQELMDNMKA 966
                   9*************************9955544445566666443....33333333333344566666655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.1
  FAD_oxidored   88 vakavleemlaeagvtvllntrlvevekegkr..iesvtveske.g.rktirA 136 
                    + k+++  +l+ ++vtv +nt+++e++ ++ +  + +++v++   g +++++A
    CCE29813.1 1083 ASKTMATRLLKHDKVTVRFNTVATEIRGSESDglMSHLVVKDTVsGkEEVVEA 1135
                    5678899999999**********999987433357777777666565666666 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.041        36      12      39 ..     896     923 ..     887     925 .. 0.87
   2 ?    4.5   0.0     0.037        33      11      74 ..    1045    1109 ..    1038    1137 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.041
                   T-EEEEES-SHHHHHHHHHHHCCT-CEE CS
  Shikimate_DH  12 ekkvlliGaGemaelvakhLlakgvkkv 39 
                   ++kv++iG G  a+ +a +L+++++k v
    CCE29813.1 896 HSKVVIIGSGPAAHTAAVYLARAELKPV 923
                   689*****************99988765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.037
                    TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHH.HHHHHHHT.ET-EEEEGCGHHHHHH CS
  Shikimate_DH   11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlera.kelaeelkgeeiealkleelkella 74  
                    ++k   +iG G  a + a+ L + g +  v + R+  ra k++a++l +++  +++++ + + ++
    CCE29813.1 1045 RNKPLYVIGGGDSAAEEATFLTKYGSHVTVLVRRDALRAsKTMATRLLKHDKVTVRFNTVATEIR 1109
                    567789****************9999977778888888735688999888788888888888775 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.31   2.8e+02      76     104 ..      31      59 ..      18      79 .. 0.76
   2 ?   10.1   0.9   0.00081      0.72       3     104 ..      82     184 ..      80     189 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.31
     DUF5082  76 essyqtyvdkldelidaieeEIerLenqi 104
                  ss++++ + l++  + +++EI++Le + 
  CCE29813.1  31 VSSINQVSQTLRAHYSVLSSEINTLELEQ 59 
                 6789999999999999*********9653 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00081
     DUF5082   3 tkisklqaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklekplnssesWkGk.eennydgirs...nlessyqty..vdkldelidaiee 95 
                 +ki+++++++ e++++i ++   I+rL  +k+ l+    +lk      +     +e ++G  ++ +y +++     + + ++++  ++ +++ i+ +++
  CCE29813.1  82 RKIETVRSRALETEQNITSMTAEIKRLDGTKRNLTLSMTALKRL----QMLTTAYEQLRGLaKTRQYRECAGllqAVLQLMKHFnsYRSIEQ-IATLSR 175
                 79********************************9888877654....44445555677777777777777766544444443311555655.467777 PP

     DUF5082  96 EIerLenqi 104
                 E+++L+ ++
  CCE29813.1 176 EVSELQREL 184
                 777777776 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.3    0.0021       1.9       1      50 [.     898     954 ..     898     971 .. 0.74
   2 ?    0.3   0.0      0.32   2.8e+02     113     162 ..     975    1025 ..     968    1034 .. 0.66
   3 ?   -0.1   0.0      0.44   3.9e+02       3      28 ..    1050    1075 ..    1048    1117 .. 0.82
   4 ?   -0.7   0.0      0.65   5.8e+02     353     388 ..    1172    1209 ..    1165    1213 .] 0.76

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0021
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE.......ES-GGGTT--SSSSEEE-TTHH CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi.......thkldtiaelsCnpsiggiakg 50 
                 +v++iG G A   AA+ +ar+ +k +L+           +++ +    +++ g  kg
  CCE29813.1 898 KVVIIGSGPAAHTAAVYLARAELKPVLYegfmangIAAGGQLTTTTEVENFPGFPKG 954
                 69*************************977776664444444444444555555555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.32
                  EEES-EEEEEECTTEEEE.EEETTS-EEEECEEEE--TT-BT-EEEETTEE CS
        GIDA  113 iieeeveeliveekkvkg.vvtedgetikakavviatGtflkgkihigeke 162 
                  ii+++v+ l+++ +  k     + +et +a++v+iatG+  +    +ge++
  CCE29813.1  975 IITDTVHTLDLSARPFKYtTEFSPDETHTADSVIIATGASARRMNLTGEDK 1025
                  5556666665555555552233456778889*******9666666666655 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.44
                  EEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA    3 iViGgGhAGceAAlaaarlGakvlLi 28  
                   ViGgG +  e A  + + G +v+ +
  CCE29813.1 1050 YVIGGGDSAAEEATFLTKYGSHVTVL 1075
                  79****************99999877 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.65
                  SSSBTEEE-CGGGTB-SHHHH...HHHHHHHHHHHHHHH CS
        GIDA  353 kkvkgLflAGqinGteGYeEa...aaqGllAGinaarka 388 
                   +v+g+f+AG++     Y  a   a++G++A++ a + +
  CCE29813.1 1172 TSVEGVFAAGDVQDKR-YRQAitsAGTGCMAALEAEKFL 1209
                  56899*******9998.7665221679*****9998765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00031      0.28       1      27 [.     901     927 ..     901     955 .. 0.77
   2 ?    5.2   0.0     0.028        25       1      30 [.    1051    1080 ..    1051    1115 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00031
                    EE--SHHHHHHHHHHHCCTEEEEEE-S CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllek 27 
                    I+G+G ++ +aA +La+a ++ +l+e 
     CCE29813.1 901 IIGSGPAAHTAAVYLARAELKPVLYEG 927
                    9***********************993 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.028
                     EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8    1 IvGaGlsGlvaAylLakagfdvlllekrdr 30  
                     ++G+G s++  A +L+k+g +v++l +rd 
     CCE29813.1 1051 VIGGGDSAAEEATFLTKYGSHVTVLVRRDA 1080
                     8***********************977775 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5   0.00062      0.56      48     122 ..      32     110 ..      22     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00062
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkl....deqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 ++++qvs++l+a    Lss+i++++ ++    d++ e  ++ + e++++ ++++++++   + ++ ++++ ++++r+++
  CCE29813.1  32 SSINQVSQTLRAHYSVLSSEINTLELEQaykpDSSLERMQAAQTELAQLFRKIETVRSRALETEQNITSMTAEIKRLDG 110
                 5799*******************9865533338899999999********************************99976 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   4.4     0.015        14      70     129 ..      69     135 ..       6     139 .. 0.62
   2 ?    2.4   0.1      0.17   1.5e+02      20      59 ..     159     198 ..     153     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.015
        COG2  70 eleevesplaaarkkvesvreklsereeeveskleeakeleekr.......ellklllkldevvekl 129
                 +++  +++la++ +k+e vr+   e+e++++s  +e k+l  ++         lk+l++l++  e+l
  CCE29813.1  69 RMQAAQTELAQLFRKIETVRSRALETEQNITSMTAEIKRLDGTKrnltlsmTALKRLQMLTTAYEQL 135
                 2333456677777777777777777777777777777777777766665557788888877777776 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.17
        COG2  20 selrhgvpLeslrrdLeaylkllekellelvnedyad.Fvs 59 
                 ++ +++ ++e++   L   +++l++elle v ed++  Fv+
  CCE29813.1 159 KHFNSYRSIEQIA-TLSREVSELQRELLEQVCEDFEMaFVK 198
                 5566677777765.5888899**************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       914  (0.0509789); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.49
# Mc/sec: 7516.64
//
Query:       CCE29814.1  [L=501]
Description: probable UDP-N-acetylglucosamine pyrophosphorylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-56  190.9   0.0    3.8e-56  190.5   0.0    1.1  1  UDPGP         UTP--glucose-1-phosphate uridylyltransferase
  ------ inclusion threshold ------
      0.043   14.2   0.0       0.09   13.1   0.0    1.5  1  NTP_transf_3  MobA-like NTP transferase domain
      0.055   13.3   0.0      0.096   12.5   0.0    1.3  1  YhcG_C        YhcG PDDEXK nuclease domain


Domain annotation for each model (and alignments):
>> UDPGP  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.5   0.0   6.3e-60   3.8e-56      43     339 ..     108     436 ..      65     484 .. 0.84

  Alignments for each domain:
  == domain 1  score: 190.5 bits;  conditional E-value: 6.3e-60
       UDPGP  43 keeekkell....nklavlkLnGglGtsmGckgpKslieVr..dgktfLdlivqqie........elnkkynvdvPlvlmnSfnTdedtekilk..kyk 125
                 +++ +  l     nk+av+ ++Gg+Gt++G + pK+ +++   ++k+++++++++i+        +  +++   vP++ m+S  T++ te++++  ky+
  CCE29814.1 108 DKWYRCGLDliskNKVAVVLMAGGQGTRLGSSAPKGCYDIGlpSHKSLFQIQAERIRkvqelatkQAGTTSSAVVPWYVMTSGPTHQPTEQFFEenKYF 206
                 44444332244669***************************99*************989888887777888999*******************9999** PP

       UDPGP 126 k.kkvdiltfnqsryPriskesllpvekkakkeekeewyPpGhGdlyesLknsglldkllaeGkeyiFvsniDN.lgatvDlkilnllvekkaeflmev 222
                 + +k++++ f q+ +P is+e ++ +e+k k     + +P+G+G++y++L+ sg+ld++ ++G+e+i+ +++DN l++++D+ ++++  + +++ + +v
  CCE29814.1 207 GlDKTNVRIFDQGVLPCISNEGKILLESKGK----VAVAPDGNGGIYQALVVSGVLDDMRKRGIEHIHAYCVDNcLVKVADPVFIGFSSSLDVDIATKV 301
                 **************************98886....89************************************************************** PP

       UDPGP 223 tektradvkgGtlieyegklrlleiaqvpkehveefksvk.....kfkifntnniwinlkalkrlvee.kelkleiivnk.ktld.egekviqletavg 313
                 ++k  a++ +G +  ++gk +++e++++ +++++e ++ k     kf+  n  n + ++++l+++ +  ++l ++i+++k    d +  + ++ e ++g
  CCE29814.1 302 VRKRDATESVGLILCKNGKPDVVEYSEM-DSATAEAQDPKqpgllKFRAANIVNHYYSFRFLETIPQWaHKLPHHIARKKiPFADtKTGETVKPESPNG 399
                 ****************************.55666666655232224555555555**********95559*********96666654455********* PP

       UDPGP 314 aaiksF..........kkavginVpR.srflpvktts 339
                 +++++F          +k+ +++V R ++f+p+k+++
  CCE29814.1 400 IKLEQFvfdvfpmlplNKFACMEVRReDEFSPLKNAR 436
                 **************************99******986 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.5e-05      0.09       1      37 [.     125     166 ..     125     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
                   EEEEEESS-TTTTT..THHHHCC...CCCCHHHHHHHHHCTT CS
  NTP_transf_3   1 aviLAGGrSsRmgg..dKallpl...ggkpllervldalraa 37 
                   +v++AGG+++R+g+  +K  +++     k+l++ +++++r++
    CCE29814.1 125 VVLMAGGQGTRLGSsaPKGCYDIglpSHKSLFQIQAERIRKV 166
                   5899*********889*******8888999999999999987 PP

>> YhcG_C  YhcG PDDEXK nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.6e-05     0.096      95     130 ..     295     330 ..     269     336 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.6e-05
      YhcG_C  95 lsaldeelkkeednptiGiilckekdktvveyalke 130
                 ++++ + ++k +  +++G+ilck+ +  vvey+  +
  CCE29814.1 295 VDIATKVVRKRDATESVGLILCKNGKPDVVEYSEMD 330
                 6677889999999*******************8654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3604.29
//
Query:       CCE29815.1  [L=837]
Description: related to MRD1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-69  229.4   0.1    1.2e-16   60.2   0.0    5.5  5  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    5.4e-13   48.6   0.0     0.0012   18.7   0.0    4.5  5  RRM_occluded  Occluded RNA-recognition motif
    1.3e-07   31.6   0.1      0.024   14.7   0.0    5.1  5  RRM_3         RNA binding motif
    0.00015   21.8   0.4       0.56   10.3   0.0    4.9  5  Limkain-b1    Limkain b1
    0.00073   19.6   0.0        2.8    8.1   0.0    4.3  4  RRM_7         RNA recognition motif
     0.0026   17.6   0.1         13    5.5   0.0    4.6  4  RRM_Rrp7      Rrp7 RRM-like N-terminal domain
     0.0033   17.5   3.6        1.3    9.1   1.0    4.2  3  Smg4_UPF3     Smg-4/UPF3 family
  ------ inclusion threshold ------
        7.8    6.7   8.9         11    6.3   0.1    4.7  5  PHM7_cyt      Cytosolic domain of 10TM putative phosphate tra


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   3.8e-12   8.5e-09       1      66 [.       6      67 ..       6      71 .. 0.90
   2 !   60.2   0.0   5.6e-20   1.2e-16       1      70 []     313     382 ..     313     382 .. 0.97
   3 !   31.0   0.0   7.5e-11   1.7e-07       1      67 [.     495     556 ..     495     558 .. 0.92
   4 !   46.7   0.0   9.1e-16     2e-12       1      69 [.     610     684 ..     610     685 .. 0.94
   5 !   49.7   0.0   1.1e-16   2.4e-13       1      69 [.     715     783 ..     715     784 .. 0.97

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 3.8e-12
                EEEESETTTSSHHHHHHHHHTTSCE.EEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpi.ksiklvrdetgkskgfafVeFeskedAekAlealngkklgg 66
                +f+++Lpp++te eL+++Fs   +  +++kl ++     +++a+V ++s++dA++A++ +n+  ++ 
  CCE29815.1  6 IFIKGLPPNITEPELRKHFSAKDREiTDVKLLPQ-----RRIAYVGYKSQDDATSAIKYFNRSYIRM 67
                8********************66544*******7.....*******************999988765 PP

  == domain 2  score: 60.2 bits;  conditional E-value: 5.6e-20
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 lf +nL++++te++L+e F++fG  +++ l+ ++ g++kgfa + F + +dA kA +al+g +++gr ++
  CCE29815.1 313 LFARNLSYSTTEDDLREAFQQFGVLQEVHLPLTASGSTKGFALIHFVDASDAVKAFQALDGATFQGRIIH 382
                 6779**************************************************************9886 PP

  == domain 3  score: 31.0 bits;  conditional E-value: 7.5e-11
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggr 67 
                 + V+n+p+ +t +e++++F++ G++  + ++++       +a+V+F+++  A++A  +l  + ++++
  CCE29815.1 495 ILVKNFPYGTTMDEIRKMFEEHGQVLLVLMPPT-----GTIAIVQFAQPNHAKAAFGKLAYRRIRDS 556
                 68***********************99999995.....99****************99998888776 PP

  == domain 4  score: 46.7 bits;  conditional E-value: 9.1e-16
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE......TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd......etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lf++nL+++++ e + e F+   +++s+++ ++       +  s+gf+fVeF +ke+A++Al+ ++g+ l+g++l
  CCE29815.1 610 LFIRNLNFTTSTERMAEAFKALDGFVSARVKTKtdpkkpGQTLSMGFGFVEFSTKEQAQAALKVMDGYVLDGHTL 684
                 8******************************9997776666679****************************997 PP

  == domain 5  score: 49.7 bits;  conditional E-value: 1.1e-16
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++++nLp+ +t+++++ l++ +G+ +s++++r+ + +++gfaf +F + ++Ae+Al+al  + l gr+l
  CCE29815.1 715 IVIKNLPFQATKKDVRSLLGSYGQLRSVRVPRKPDSTARGFAFADFVTAREAENALNALKDTHLLGRRL 783
                 79***********************************************************99999987 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.7e-05     0.061       6      68 ..       8      70 ..       4      80 .. 0.85
   2 !   18.7   0.0   5.2e-07    0.0012      10      70 ..     319     383 ..     313     387 .. 0.79
   3 !   10.2   0.0   0.00023      0.52       3      51 ..     494     541 ..     492     556 .. 0.87
   4 ?   -1.3   0.0      0.91     2e+03      43      68 ..     659     684 ..     657     688 .. 0.76
   5 ?   -2.3   0.0       1.9   4.2e+03       4      32 ..     715     742 ..     713     747 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.7e-05
  RRM_occluded  6 llplsDtvnkariralveekegeikkivLvpdheGAivefkdekiagkasLaLdgsefegkkl 68
                  + +l+ ++++ ++r++++ k+ ei+++ L p+ + A v +k++ +a  a+   + s +   kl
    CCE29815.1  8 IKGLPPNITEPELRKHFSAKDREITDVKLLPQRRIAYVGYKSQDDATSAIKYFNRSYIRMSKL 70
                  6689999***************************************99886666666655555 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 5.2e-07
  RRM_occluded  10 sDtvnkariralveekegeikkivLvpdheG.....AivefkdekiagkasLaLdgsefegkklrc 70 
                   s   +++ +r+ +++  g +++++L    +G     A++ f d+++a ka  aLdg +f+g+ +++
    CCE29815.1 319 SYSTTEDDLREAFQQF-GVLQEVHLPLTASGstkgfALIHFVDASDAVKAFQALDGATFQGRIIHI 383
                   5556777778888888.88888877655555444459***************************97 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00023
  RRM_occluded   3 tisllplsDtvnkariralveekegeikkivLvpdheGAivefkdekia 51 
                   ti + +++   + ++ir+++ee+ g++  +++ p    Aiv+f++ ++a
    CCE29815.1 494 TILVKNFPYGTTMDEIRKMFEEH-GQVLLVLMPPTGTIAIVQFAQPNHA 541
                   67777778888999*********.********************99987 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.91
  RRM_occluded  43 vefkdekiagkasLaLdgsefegkkl 68 
                   vef+ +++a  a+  +dg+ ++g++l
    CCE29815.1 659 VEFSTKEQAQAALKVMDGYVLDGHTL 684
                   7787777666666679*****99998 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 1.9
  RRM_occluded   4 isllplsDtvnkariralveekegeikki 32 
                   i + +l+ + +k+ +r+l+ ++ g+++ +
    CCE29815.1 715 IVIKNLPFQATKKDVRSLLGSY-GQLRSV 742
                   567788889999********99.998876 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0076        17       5      68 ..       7      71 ..       5      81 .. 0.85
   2 ?    2.1   0.0     0.086   1.9e+02      12      57 ..     321     371 ..     314     383 .. 0.73
   3 !   14.7   0.0   1.1e-05     0.024      12      61 ..     503     555 ..     495     585 .. 0.78
   4 ?   -2.3   0.0       2.1   4.6e+03      40      55 ..     657     672 ..     656     678 .. 0.85
   5 ?    1.8   0.0      0.11   2.5e+02      14      93 ..     725     812 ..     715     823 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0076
                EEEE-SSS--HHHHHHHCHCCS.-ECEEEE-TTSSEEEEEESSHHHHHHHHHHHHHC-B-CCTSS CS
       RRM_3  5 klsGlnkelsredikellsklg.evayvdyekgdkegevrFkedeeakkalekateaklkikdae 68
                +++Gl  +++  ++++ +s+ + e+  v +      ++v +k++++a  a++    + +++ + +
  CCE29815.1  7 FIKGLPPNITEPELRKHFSAKDrEITDVKLLPQRRIAYVGYKSQDDATSAIKYFNRSYIRMSKLS 71
                6899999999999*****999999999********************999998777766665555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.086
                 S--HHHHHHHCHCCS...-ECEEEE-TTSSEE..EEEESSHHHHHHHHHHH CS
       RRM_3  12 elsredikellsklg...evayvdyekgdkeg..evrFkedeeakkaleka 57 
                  ++ +d++e+++++g   ev+    ++g ++g   + F ++++a ka++++
  CCE29815.1 321 STTEDDLREAFQQFGvlqEVHLPLTASGSTKGfaLIHFVDASDAVKAFQAL 371
                 57899**********555555444567777762257888999998888876 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.1e-05
                 S--HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHHHHHHHC...- CS
       RRM_3  12 elsredikellsklgevayvdyekgdkegevrFkedeeakkalekatea...k 61 
                  ++ ++i+++++++g+v  v +  + + + v+F++++ ak+a+ k++     +
  CCE29815.1 503 GTTMDEIRKMFEEHGQVLLVLMPPTGTIAIVQFAQPNHAKAAFGKLAYRrirD 555
                 57899***************************************998773331 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.1
                 EEEEESSHHHHHHHHH CS
       RRM_3  40 gevrFkedeeakkale 55 
                 g v F ++e+a++al+
  CCE29815.1 657 GFVEFSTKEQAQAALK 672
                 678999**99999986 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.11
                 -HHHHHHHCHCCS-ECEEEE-TT.SSE....EEEEESSHHHHHHHHHHHHHC...-B-CCTSSEEEEE--HHHHHHHHHHHHHHHHHC CS
       RRM_3  14 sredikellsklgevayvdyekg.dke....gevrFkedeeakkalekatea...klkikdaevtlelLeGeeEkeywkkiledkqkk 93 
                 +++d++ ll ++g+++ v + +  d++    +   F ++ ea++al++++++     ++     ++e ++ eeE e +++ + ++ +k
  CCE29815.1 725 TKKDVRSLLGSYGQLRSVRVPRKpDSTargfAFADFVTAREAENALNALKDThllGRRLVLDFAEAEAVDAEEEIEKMQRKVGRQVNK 812
                 5666666666666666666644312221111235677888999999999999555334444556788999999999998888887666 PP

>> Limkain-b1  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.9     2e+03      43      73 ..      42      72 ..      34      83 .. 0.78
   2 ?   -2.8   0.0       3.1   6.9e+03      43      73 ..     353     383 ..     349     392 .. 0.78
   3 ?    2.9   0.0     0.052   1.2e+02      24      61 ..     508     548 ..     495     568 .. 0.75
   4 !   10.3   0.0   0.00025      0.56      40      86 ..     653     699 ..     610     701 .. 0.90
   5 ?    1.6   0.0      0.13   2.9e+02      38      86 ..     750     798 ..     712     800 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.9
  Limkain-b1 43 savlrfanqeaaeralkrleneDvfGnritv 73
                 a + +++q+ a  a+k ++   +   +++v
  CCE29815.1 42 IAYVGYKSQDDATSAIKYFNRSYIRMSKLSV 72
                5789999********9988776666666665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.1
  Limkain-b1  43 savlrfanqeaaeralkrleneDvfGnritv 73 
                  a ++f +   a +a + l++    G  i +
  CCE29815.1 353 FALIHFVDASDAVKAFQALDGATFQGRIIHI 383
                 5889999999999999999998877777765 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.052
  Limkain-b1  24 rLrrLsdncGGkvlsi....sgksavlrfanqeaaeralkrl 61 
                  +r++++  G  vl +     g+ a+++fa+++ a+ a  +l
  CCE29815.1 508 EIRKMFEEHGQ-VLLVlmppTGTIAIVQFAQPNHAKAAFGKL 548
                 56777777654.443323335899***********9997665 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00025
  Limkain-b1  40 sgksavlrfanqeaaeralkrleneDvfGnritvsekprnkevneee 86 
                 s +   + f+ +e a+ alk +++    G+ + v+ + r ++ +ee+
  CCE29815.1 653 SMGFGFVEFSTKEQAQAALKVMDGYVLDGHTLGVKASHRGHDAAEER 699
                 55566899*****************************9999999886 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.13
  Limkain-b1  38 sisgksavlrfanqeaaeralkrleneDvfGnritvsekprnkevneee 86 
                 s   + a   f     ae al  l +    G r+ + +   ++ ++eee
  CCE29815.1 750 STARGFAFADFVTAREAENALNALKDTHLLGRRLVLDFAEAEAVDAEEE 798
                 445566777888999999999999999999**99999998888888776 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0013       2.8       3      24 ..       5      26 ..       3      49 .. 0.90
   2 ?    1.4   0.0      0.16   3.6e+02       5      33 ..     314     343 ..     310     366 .. 0.79
   3 ?   -0.8   0.0      0.78   1.8e+03       7      30 ..     498     521 ..     494     569 .. 0.74
   4 ?    3.7   0.0      0.03        66       3      40 ..     714     752 ..     712     770 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0013
       RRM_7  3 kvFvGGlPiDiteeelkatfke 24
                ++F+ GlP++ite el + f++
  CCE29815.1  5 RIFIKGLPPNITEPELRKHFSA 26
                79***************99985 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.16
       RRM_7   5 FvGGlPiDiteeelkatfkefgkvl.vdwP 33 
                 F   l    te++l ++f++fg ++ v  P
  CCE29815.1 314 FARNLSYSTTEDDLREAFQQFGVLQeVHLP 343
                 5556667789************87425555 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.78
       RRM_7   7 GGlPiDiteeelkatfkefgkvlv 30 
                    P   t +e+ + f+e+g+vl+
  CCE29815.1 498 KNFPYGTTMDEIRKMFEEHGQVLL 521
                 55788889999*********9853 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.03
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvl.vdwPkkaeskk 40 
                 k+ +  lP   t++++ + ++++g+++ v  P+k+ s++
  CCE29815.1 714 KIVIKNLPFQATKKDVRSLLGSYGQLRsVRVPRKPDSTA 752
                 899999*******************85499999987754 PP

>> RRM_Rrp7  Rrp7 RRM-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.041        93      88     133 ..     304     371 ..     278     378 .. 0.58
   2 ?    2.1   0.0     0.068   1.5e+02      41      65 ..     492     516 ..     483     525 .. 0.84
   3 !    5.5   0.0    0.0059        13      37      66 ..     603     632 ..     598     648 .. 0.81
   4 ?   -0.5   0.0      0.42   9.4e+02      36      64 ..     706     735 ..     699     744 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.041
    RRM_Rrp7  88 idltkltsdlel...kdeekdeeeakl......................PkntglvkfvDkssvelafnal 133
                 +++ + ts l     + +++++    l                       k  +l++fvD s +  af+al
  CCE29815.1 304 VQVISRTSRLFArnlSYSTTEDD---LreafqqfgvlqevhlpltasgsTKGFALIHFVDASDAVKAFQAL 371
                 45555555555423211111111...122245566666666666666667778888888888888888876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.068
    RRM_Rrp7  41 srslFlvNlPiettletlkkffqkv 65 
                 + ++ + N P  tt+++++k+f+++
  CCE29815.1 492 DDTILVKNFPYGTTMDEIRKMFEEH 516
                 5689999***************987 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0059
    RRM_Rrp7  37 deessrslFlvNlPiettletlkkffqkva 66 
                 +e +  slF+ Nl  +t++e + ++f+  +
  CCE29815.1 603 EEVETTSLFIRNLNFTTSTERMAEAFKALD 632
                 444789*******************99874 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.42
    RRM_Rrp7  36 ndee.ssrslFlvNlPiettletlkkffqk 64 
                 ++ + +   + + NlP ++t + +++ ++ 
  CCE29815.1 706 KKAAaQRTKIVIKNLPFQATKKDVRSLLGS 735
                 3333134568999********999998875 PP

>> Smg4_UPF3  Smg-4/UPF3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   1.0   0.00056       1.3       4      61 ..       4      68 ..       2     164 .. 0.74
   2 ?   -0.1   0.0      0.36   8.1e+02      52      79 ..     350     377 ..     345     379 .. 0.88
   3 ?    3.8   0.0     0.024        53       2      27 ..     711     744 ..     710     776 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00056
   Smg4_UPF3  4 tKvviRrLPPnLteeefleavsd.........kplpetvdykyFvpGklskdslkeskysrayinfk 61
                +++ i+ LPPn+te e+ ++ s+            ++++ y  + + +  + ++  + + r yi+++
  CCE29815.1  4 SRIFIKGLPPNITEPELRKHFSAkdreitdvkLLPQRRIAYVGYKSQD--DATSAIKYFNRSYIRMS 68
                7999******************54455555522222234444443333..33344445566666654 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.36
   Smg4_UPF3  52 kysrayinfkdpedlvqfakkfdghvFv 79 
                 +   a i+f d++d v+  +++dg++F+
  CCE29815.1 350 TKGFALIHFVDASDAVKAFQALDGATFQ 377
                 567899*******************996 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.024
   Smg4_UPF3   2 ektKvviRrLPPnLteeefleavsd........k 27 
                 ++tK+vi+ LP + t++ + + +++         
  CCE29815.1 711 QRTKIVIKNLPFQATKKDVRSLLGSygqlrsvrV 744
                 689*************999999984333444441 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.27     6e+02     120     169 ..      38      92 ..      16      93 .. 0.65
   2 ?   -0.6   0.0      0.61   1.4e+03       2      26 ..     493     516 ..     492     524 .. 0.84
   3 ?   -4.1   0.0       7.2   1.6e+04     124     139 ..     530     545 ..     526     554 .. 0.80
   4 ?    6.3   0.1    0.0048        11     121     140 ..     648     672 ..     622     696 .. 0.76
   5 ?   -0.2   0.3      0.44   9.9e+02      79      79 ..     777     777 ..     696     817 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.27
    PHM7_cyt 120 kplgaaFvtfesersaaavak.....qakcaaqiqqssnptl.kpkkwtvelAPeP 169
                  ++++a v ++s+ +a++++k     ++ +++   ++  p + ++ +++ + AP+P
  CCE29815.1  38 PQRRIAYVGYKSQDDATSAIKyfnrsYIRMSKLSVETARP-IsESASVQGHNAPQP 92 
                 347899999*******999998887766665555555555.347788888888888 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.61
    PHM7_cyt   2 rTvlvtgiPkelrseeklkeffeel 26 
                  T+lv++ P  ++  ++++++fee 
  CCE29815.1 493 DTILVKNFPYGTT-MDEIRKMFEEH 516
                 59********999.677*****986 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 7.2
    PHM7_cyt 124 aaFvtfesersaaava 139
                 +a v+f++ ++a+a++
  CCE29815.1 530 IAIVQFAQPNHAKAAF 545
                 6899999999999886 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0048
    PHM7_cyt 121 p.....lgaaFvtfesersaaavak 140
                 p     +g +Fv+f+++++a+a++k
  CCE29815.1 648 PgqtlsMGFGFVEFSTKEQAQAALK 672
                 255555899*************986 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.44
    PHM7_cyt  79 h 79 
                 h
  CCE29815.1 777 H 777
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1080  (0.0602376); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5610.24
//
Query:       CCE29816.1  [L=900]
Description: uncharacterized protein CPUR_03663 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-27   93.0   0.0    2.1e-26   91.8   0.0    1.7  1  TEA       TEA/ATTS domain


Domain annotation for each model (and alignments):
>> TEA  TEA/ATTS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0   1.2e-30   2.1e-26       2      68 .]     133     218 ..     132     218 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 1.2e-30
         TEA   2 ekvW.ppeledafleallliPpmgrrklklegklhgRnelIseyI..................lkktgkertrKQvsShiQvlkkt 68 
                 + vW +peledaf++++ll+P+mgrrk++++gklhgRn+lIseyI                  ++++++++ rKQvsSh+Qv+kk+
  CCE29816.1 133 GGVWrRPELEDAFVDSVLLMPHMGRRKFSMGGKLHGRNMLISEYIfvicvailgskeifridnSNESIEQMGRKQVSSHMQVVKKF 218
                 679*99******************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 6532.68
//
Query:       CCE29817.1  [L=544]
Description: related to dynein light intermediate chain 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-33  115.7   0.0    1.8e-31  109.5   0.0    2.2  2  DLIC      Dynein light intermediate chain (DLIC)


Domain annotation for each model (and alignments):
>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.0     1e-35   1.8e-31       1     316 [.      24     345 ..      24     360 .. 0.83
   2 !    3.8   0.0    0.0011        20     325     352 ..     414     442 ..     404     479 .. 0.72

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 1e-35
        DLIC   1 degqnlwsailsevstrsssklPsgksvlvlGedgsGkttliaklqGve.....eekk......GrGleylyldvkdedrddl.trlnvwildG.dlyh 86 
                 ++++nlw+++l+ v   s  +lP +k++lvlG     +  +i  l   e     + +k         l y y dv d d+dd+ +r++ ++l       
  CCE29817.1  24 EQKKNLWTSMLESVA--SGKRLP-EKNLLVLGGTPETQREFIESLSNSEgrrtfDRQKippvanSFALGYTYYDVLDADQDDTlARVSLYLLSQpSSEF 119
                 5799*******9886..556787.79*********999999999987772222222232222225689************99648*******8625678 PP

        DLIC  87 kgllkfaleaeslkdtlvilvvdlsrPwtileslqkwasvlrehidklkiepeekreleqrlvkefqeyvepeedl..pgsPqrrtprlssvdedsvll 183
                  +l+   l+a+++ +t +i+ +d ++P  +l ++  w++vl++ + +  +++e ++e+e+ ++++++e    + +l  +g+P   +++    d d  ll
  CCE29817.1 120 ASLVSPLLTAQAVPHTAIIILLDWAQPHLWLRQVWTWIQVLEKVMSQ--VNSESRNEMEE-IMTTWKERGRGGAALnlDGTPTAAGTSG---DGD-GLL 211
                 999***************************************99885..67888889886.7889***998888765588887665554...444.7** PP

        DLIC 184 PlgedvlttnlGldvvvvvtkcdaisvlekehdyrdehldfiqshirrfclqyGaallytsvkedknldllykylvhkiyglpfrtP..alvvekdavl 280
                 Plg +     lGl++ vv+  +  +  lek+  +r+  +d + +++r   l+ Ga+l+yts      l  l    +  i  l  r P    v+++d ++
  CCE29817.1 212 PLGPGEWSEPLGLPLCVVCQNAQKMEFLEKNKGWREPDFDTVLQYLRTILLRHGASLIYTSQNSPSQLPTLVHS-TLGITSLLKRQPlkHNVIDRDKIV 309
                 *************************************************************9999888765443.3345555567772257******** PP

        DLIC 281 iPaGwdnekkiailyenlqtvkaedsyedvikkPPv 316
                 +   wd+  ki il   +++      +e+ ik PP 
  CCE29817.1 310 VAPNWDSWGKIRILGGTFDAEVISRGWEEDIKLPPG 345
                 *****************9998889999999999985 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0011
        DLIC 325 iqaedeqvflvkqqsllak.qpatatrgv 352
                 + +ed qvfl kq+++l+  ++++++++v
  CCE29817.1 414 VDSEDPQVFLEKQLKILEAfKSKVPEKSV 442
                 689*************9642445555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4136.63
//
Query:       CCE29818.1  [L=353]
Description: related to RNA-binding proteins [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-15   55.6   0.0    3.2e-14   52.5   0.0    2.2  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
     0.0023   18.0   0.0     0.0092   16.1   0.0    2.0  2  RRM_7     RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.066   5.9e+02      54      66 ..       5      17 ..       3      18 .. 0.89
   2 !   52.5   0.0   3.5e-18   3.2e-14       1      69 [.      35     104 ..      35     105 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.066
                HHHHHHTTEEETT CS
       RRM_1 54 kAlealngkklgg 66
                +A+++ln++++++
  CCE29818.1  5 RAIQELNKREIEN 17
                7********9986 PP

  == domain 2  score: 52.5 bits;  conditional E-value: 3.5e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++ g+Lp+++te ++ ++Fs+fG+ + +kl rd etgkskgf+  ++e++++ + A+++l g  +ggr +
  CCE29818.1  35 IYFGGLPYELTEGDVITIFSQFGDPTFLKLARDkETGKSKGFGWLKYEDQRSTDLAVDNLGGADVGGRII 104
                 6889***************************************************************977 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     1e-06    0.0092       4      67 ..      35      91 ..      32     103 .. 0.77
   2 ?   -2.1   0.0      0.47   4.2e+03      53      74 ..     181     202 ..     162     216 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1e-06
       RRM_7  4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLl 67
                ++ GGlP ++te ++++ f++fg+         + ++ +++     kg+ +l +ed++s    +
  CCE29818.1 35 IYFGGLPYELTEGDVITIFSQFGDP-----TFLKLARDKET--GKSKGFGWLKYEDQRSTDLAV 91
                789********************84.....44444333332..224799999999999976655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.47
       RRM_7  53 vflvfedeksvkaLleacteee 74 
                 +flv e++k v++  ++++++e
  CCE29818.1 181 AFLVEEKKKEVQEARKHAEQKE 202
                 4666677777766666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1597  (0.0890736); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.52
# Mc/sec: 2056.08
//
Query:       CCE29819.1  [L=379]
Description: uncharacterized protein CPUR_03666 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-08   32.8   0.4      0.014   16.3   0.0    3.6  3  WD40         WD domain, G-beta repeat
    4.9e-07   30.0   0.0    1.8e-05   24.9   0.0    2.8  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.034   13.5   0.0      0.074   12.4   0.0    1.5  1  Nbas_N       Neuroblastoma-amplified sequence, N terminal
      0.052   12.5   0.0       0.85    8.5   0.0    2.1  2  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
      0.085   10.8   0.0       0.97    7.3   0.0    2.3  3  IKI3         IKI3 family


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.21   7.5e+02      13      28 ..      15      30 ..       8      39 .. 0.79
   2 !   11.0   0.0   0.00018      0.66       4      33 ..     173     203 ..     171     209 .. 0.78
   3 !   16.3   0.0   3.9e-06     0.014      13      38 .]     228     253 ..     213     253 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.21
                EEEEEEETTSSEEEEE CS
        WD40 13 vtslafspdgawlasG 28
                v s+af++d++ +a G
  CCE29819.1 15 VLSVAFNSDSSCFAVG 30
                889********99988 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00018
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgt 33 
                 + ++ +H s   +++ spdg++la++s+ gt
  CCE29819.1 173 VSIIPAHsSALKAIQLSPDGDLLATASETGT 203
                 567789*55599*************996444 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 3.9e-06
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 v slafsp+g++la+ sd+ t++i+d
  CCE29819.1 228 VFSLAFSPSGKMLACTSDKSTLHIFD 253
                 89***********998*9*****998 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.12   4.2e+02      40      63 ..      14      37 ..       8      54 .. 0.85
   2 ?   -2.3   0.0       1.6   5.7e+03      50      68 ..     161     179 ..     148     183 .. 0.63
   3 !   24.9   0.0   5.1e-09   1.8e-05       2      71 ..     187     258 ..     186     274 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.12
  ANAPC4_WD40 40 evrsLaWkpdgklLavaysdgevr 63
                  v s+a++ d + +av+ + g + 
   CCE29819.1 14 AVLSVAFNSDSSCFAVGLESGICI 37
                 68899*************999874 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
  ANAPC4_WD40  50 gklLavaysdgevrlldae 68 
                  g++  v  + g+v+++ a+
   CCE29819.1 161 GQIQLVELATGNVSIIPAH 179
                  4555555666666666554 PP

  == domain 3  score: 24.9 bits;  conditional E-value: 5.1e-09
  ANAPC4_WD40   2 swcptmDLiAlatedgell.vf.RlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  + +p  DL+A a+e+g l+ v+  +n  r+ +l +  +  +v sLa++p+gk+La   ++++++++d+ ++k
   CCE29819.1 187 QLSPDGDLLATASETGTLIrVYsTTNCARIAELRRGIDPATVFSLAFSPSGKMLACTSDKSTLHIFDIPNAK 258
                  6799************98524415699******999*******************************99987 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.1e-05     0.074     194     264 ..     185     260 ..     147     272 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.1e-05
      Nbas_N 194 ykqvtsyeddvgalakkrgllkllslklysrkaeekdg.....vfkmslspdgtllavihfsgklsiwdipslkqr 264
                   q++  +d +++ +++ +l+++ s    +r ae + g     vf +++sp g +la+      l i+dip  k+ 
  CCE29819.1 185 AIQLSPDGDLLATASETGTLIRVYSTTNCARIAELRRGidpatVFSLAFSPSGKMLACTSDKSTLHIFDIPNAKRP 260
                 55777788888999999999999999888877766554222338***************************98865 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00024      0.85     175     214 ..     166     208 ..     157     220 .. 0.72
   2 ?    1.6   0.0     0.031   1.1e+02     189     217 ..     227     255 ..     210     270 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00024
    Ge1_WD40 175 eeieegllki.eehs.liveaafspdGtalatasedGe.vkff 214
                  e+ +g + i   hs  +    +spdG  latase G+ ++ +
  CCE29819.1 166 VELATGNVSIiPAHSsALKAIQLSPDGDLLATASETGTlIRVY 208
                 5555666654244553788889*************99624555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.031
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqvy 217
                 ++ + afsp G  la +s   +++ f + 
  CCE29819.1 227 TVFSLAFSPSGKMLACTSDKSTLHIFDIP 255
                 56666788888888888877777777764 PP

>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.033   1.2e+02     306     333 ..      14      41 ..       2      56 .. 0.78
   2 ?    7.3   0.0   0.00027      0.97      72     147 ..     136     207 ..      73     227 .. 0.75
   3 ?   -0.5   0.0     0.065   2.3e+02     237     277 ..     204     247 ..     199     252 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.033
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 306 evqsLaWsadSevLavrledrvqlwtis 333
                  v s+a ++dS++ av le  + +++++
  CCE29819.1  14 AVLSVAFNSDSSCFAVGLESGICIFHTK 41 
                 4567788888888888888888888765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00027
                 .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3  72 eekkdkivsveyladkeelvlalasGdillvtvdsdaeekeveivGsiesGieaaawspdeellalvtgeekvvlm 147
                  e+ ++++++  l+ k+        G+i lv    ++ + +v+i+    s ++a++ spd++lla ++++++++  
  CCE29819.1 136 YETAENLLGLCSLSHKQLAFPGRTPGQIQLV----ELATGNVSIIPAHSSALKAIQLSPDGDLLATASETGTLIRV 207
                 4555667777777777777777788999999....99**********************************99865 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.065
                 XXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXX CS
        IKI3 237 alrvyeregaLdsvsekvdgl....eeaLaWrPsGsliAstqrkk 277
                  +rvy+ + +   ++e  +g+      +La+ PsG+++A t  k+
  CCE29819.1 204 LIRVYSTT-NCARIAELRRGIdpatVFSLAFSPSGKMLACTSDKS 247
                 56777644.45556666666622223479**********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2813.53
//
Query:       CCE29820.1  [L=384]
Description: probable CDC11-septin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-108  362.7   0.2     2e-108  362.0   0.0    1.4  2  Septin          Septin
    2.3e-05   24.4   0.0    5.7e-05   23.2   0.0    1.7  1  MMR_HSR1        50S ribosome-binding GTPase
     0.0034   17.4   2.7        2.5    8.2   0.0    3.1  3  Dynamin_N       Dynamin family
  ------ inclusion threshold ------
      0.011   16.0   0.7      0.049   13.9   0.0    2.3  2  AAA_22          AAA domain
       0.02   15.4   3.6        7.2    7.0   0.0    2.2  2  AAA_23          AAA domain
      0.029   14.3   0.3      0.029   14.3   0.3    2.2  2  RsgA_GTPase     RsgA GTPase
      0.066   13.4   0.0       0.16   12.2   0.0    1.6  1  Roc             Ras of Complex, Roc, domain of DAPkinase
      0.075   13.3   1.0        3.5    7.9   1.3    2.7  2  EB1             EB1-like C-terminal motif
      0.096   12.7   3.3       0.24   11.4   3.3    1.6  1  Laminin_II      Laminin Domain II
        1.1    9.1   5.0        3.2    7.7   4.8    1.8  1  Ribosomal_S17e  Ribosomal S17


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.0   0.0  1.1e-111    2e-108       1     275 [.      17     295 ..      17     301 .. 0.96
   2 ?   -3.4   0.2       2.5   4.5e+03      44      52 ..     332     340 ..     311     358 .. 0.50

  Alignments for each domain:
  == domain 1  score: 362.0 bits;  conditional E-value: 1.1e-111
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS------------.------S-E..EEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHH CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdlieeekleease.kkkktveik..kkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeey 96 
                 kgi+f lmv+G+sg+G+tt++ntl+++d+ ++++ +++++ + + +v+ik  + + +++e+g+++ lt++DtpgfGd++dn+ s++ iv y++ q++++
  CCE29820.1  17 KGIQFCLMVCGASGTGRTTFVNTLCNKDVLTHKNADDPTDaHVEDSVKIKpvTVELELDEEGTRISLTIVDTPGFGDQIDNEASFSEIVGYLERQYDDI 115
                 79************************************99788999****44445567899************************************** PP

                 HHHCTSS--.SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHH CS
      Septin  97 lreesklkR.kkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakel 194
                 l ees++kR  ++ D+RvHa+lyfi+Ptghgl++ld+elmk+l+ ++n+iPvi++aD+lt  El e Kk ++e++e++ i++y++p   e++de+++e+
  CCE29820.1 116 LAEESRIKRnPRFRDNRVHAMLYFITPTGHGLRELDIELMKRLAPRCNVIPVIGRADSLTPAELAESKKLVMEDIEHYRIPVYNFPYDIEEDDEDTVEE 214
                 *********999************************************************************************877777778999*** PP

                 HHHHHHC-SEEB-SSSSEEEESSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XX CS
      Septin 195 seklkeslPfaivgsneliekkgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklskl 275
                 + +l+  +Pfaivgs++++e  g+kvr+R+ypWGvvev+n++hsdFl++r++ll++hl dLke+t++ lYe+yR+eklsk+
  CCE29820.1 215 NAELRGLMPFAIVGSEDIVEIGGRKVRARQYPWGVVEVDNPRHSDFLAIRSALLHSHLADLKEITHDFLYENYRTEKLSKS 295
                 ******************************************************************************986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.5
                 ---S-EEEE CS
      Septin  44 ktveikkkk 52 
                 +++e+k ++
  CCE29820.1 332 REIELKVQR 340
                 222222222 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   3.2e-08   5.7e-05       3      57 ..      24     112 ..      22     168 .. 0.56

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.2e-08
                 EEEESTTSSHHHHHHHHHTSTEEE.SSSTTSSSSEEEEEEEET.............TEEEEEEECGGC....................S CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaiv.sdkpgtTrdinegrvklk.............gkeielvDtpGl....................i 57 
                 ++ G + +G +t++n+l+++ + + ++    T   +e  vk+k             + ++++vDtpG+                    +
  CCE29820.1  24 MVCGASGTGRTTFVNTLCNKDVLThKNADDPTDAHVEDSVKIKpvtveleldeegtRISLTIVDTPGFgdqidneasfseivgylerqY 112
                 789****************97766255556666667777774433333333333333569*******6555555555555444333331 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0024       4.3       2      26 ..      24      48 ..      23      57 .. 0.90
   2 !    8.2   0.0    0.0014       2.5      95     122 ..      75     104 ..      48     119 .. 0.67
   3 ?   -0.1   1.0      0.48   8.6e+02      42      79 ..     321     356 ..     286     379 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0024
                EEEEBTTTTHHHHHHHHHTS--S-- CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlgedilpr 26
                +v+G+   G ++++n L+ +d+l  
  CCE29820.1 24 MVCGASGTGRTTFVNTLCNKDVLTH 48
                8********************9975 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0014
                 EEETTS-SEEEEE---B-SSSGTTS..HHH CS
   Dynamin_N  95 ilsllvkgltlvDlPGldsvnkrdq..elv 122
                 + + ++  lt+vD+PG+ ++ +++   + +
  CCE29820.1  75 DEEGTRISLTIVDTPGFGDQIDNEAsfSEI 104
                 55667789*********9977766544444 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.48
                 CT---CCS...SSEEEE.T-EB--CHHHHHHHHHHHHHH CS
   Dynamin_N  42 eeeeaseravkeelkek.ekkledfsevreeieketeki 79 
                 ee+    r+++e+l+e   k +++++e r+e+ ++++++
  CCE29820.1 321 EEQL---RREEEKLREIeLKVQREINEKRQELLARESQL 356
                 2222...23333333333444444444444444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.7e-05     0.049       7      38 ..      22      60 ..      19     115 .. 0.76
   2 ?   -0.9   0.2         1   1.8e+03      46      93 ..     302     348 ..     271     368 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-05
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaee.......e 38
                +l+v+G sGtG+Tt +++l ++++   k ++       e
  CCE29820.1 22 CLMVCGASGTGRTTFVNTLCNKDVLTHKNADdptdahvE 60
                89*****************99986544433356555441 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1
      AAA_22  46 tlpsstsskdllrellralglelkaerlsseellealeqalraravie 93 
                 ++ +s++++dl+++ +r  +++l +e+ +++e+  ++++ +++++  e
  CCE29820.1 302 NMDNSMNPEDLASQSVRLKEEQLRREEEKLREIELKVQREINEKRQ-E 348
                 5566777778877777777777777555555555666666666655.4 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.004       7.2      24      97 ..      25      88 ..      18     218 .. 0.74
   2 ?    5.8   4.2    0.0094        17     153     198 ..     306     362 ..     253     365 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.004
      AAA_23 24 ItGpNGaGKTTildAik..laLygetprlsrks..grgfeksdveiesegkvkayveltfenkdgrytrsiererels 97
                ++G  G+G TT+++ ++   +L+++ ++ +++   + + +   v+          vel++  +++r    i+ ++  +
  CCE29820.1 25 VCGASGTGRTTFVNTLCnkDVLTHKNADDPTDAhvEDSVKIKPVT----------VELELDEEGTR----ISLTIVDT 88
                79**************96679***988877755553333333333..........34433333332....33333333 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0094
      AAA_23 153 e.........rleelekeleeledekkllekl..eqekekekeleeleeeleeilke 198
                 +          ++  e++l+ +e++ +++e +   +++ek++el + e++l ei+  
  CCE29820.1 306 SmnpedlasqSVRLKEEQLRREEEKLREIELKvqREINEKRQELLARESQLREIEAR 362
                 033334444433333444444333333333333356667778888888888877754 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.3   1.6e-05     0.029     101     161 ..      22      91 ..       2      95 .. 0.65
   2 ?   -3.1   0.2       3.6   6.5e+03      64      88 ..     323     347 ..     313     364 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
                  EEEEECSTTSSHHHHHHHHCTT.......-----S--------------SEEEEEETT..TEEEESS-SS CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpe.......lelktgevseklgrGkhTTtavellelae..gglliDtPGf 161
                  + +++G SG G++t++n+l ++       ++  t +  e++ + k  T + el e  +  + +++DtPGf
   CCE29820.1  22 CLMVCGASGTGRTTFVNTLCNKdvlthknADDPTDAHVEDSVKIKPVTVELELDEEGTriSLTIVDTPGF 91 
                  56789****************9455444434444444444555555555555544333445678888888 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.6
                  HHHHHHHHHHHTTSEEEE--TTTHT CS
  RsgA_GTPase  64 eleelkeelealgyevllvsaktke 88 
                  +l++ +e+l++++++v    +++++
   CCE29820.1 323 QLRREEEKLREIELKVQREINEKRQ 347
                  3666677777777666544333333 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.7e-05      0.16       2      65 ..      23      90 ..      22     100 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-05
                EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSG....GCTTBTTTTCEEEEEEEE-S CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkik....gvendkkvkkvklniWDtaG 65
                ++++G sg+G t++++ ++++++ +++++    d + ++ +kik    ++e d++ ++++l i Dt G
  CCE29820.1 23 LMVCGASGTGRTTFVNTLCNKDVLTHKNADDPTDAHVEDSVKIKpvtvELELDEEGTRISLTIVDTPG 90
                699*****************998766665555555544444554222245667778889999999877 PP

>> EB1  EB1-like C-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.3     0.002       3.5      10      30 ..     329     348 ..     329     352 .. 0.74
   2 ?    1.9   0.0      0.15   2.7e+02      10      23 ..     354     366 ..     354     382 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.002
                 HHHHHHHHHHHHTT----HHH CS
         EB1  10 sKLRdIEilcqtepeleedlp 30 
                 +KLR+IE+ +q+ + +e+ ++
  CCE29820.1 329 EKLREIELKVQR-EINEKRQE 348
                 6**********9.55554555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHTT CS
         EB1  10 sKLRdIEilcqtep 23 
                 s LR+IE  +q+ +
  CCE29820.1 354 SQLREIEARMQR-E 366
                 57******9998.2 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.3   0.00013      0.24      16      84 ..     272     340 ..     263     369 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH CS
  Laminin_II  16 leqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleea 84 
                 l++l+++  +   ++   +++ +sv+ t+ +++++++  ++A++sv+  e+++ + ++kl+e++ + + 
  CCE29820.1 272 LADLKEITHDFLYENYRTEKLSKSVDGTTGNMDNSMNPEDLASQSVRLKEEQLRREEEKLREIELKVQR 340
                 778999999999999999*******************************************99865443 PP

>> Ribosomal_S17e  Ribosomal S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.8    0.0018       3.2      61     103 ..     326     368 ..     320     379 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0018
                     TTSS--SS---HHHHHHHHHHH-----------------HHHH CS
  Ribosomal_S17e  61 iqkgpvrgislklqeeererrdnyvpevsaldqeaievdkdtk 103
                      ++++ r i lk+q+e  e+r++    +s+l + +++++++++
      CCE29820.1 326 REEEKLREIELKVQREINEKRQELLARESQLREIEARMQREAS 368
                     578999*************************888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1373  (0.0765798); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 2906.09
//
Query:       CCE29821.1  [L=279]
Description: related to C-term. of A.nidulans regulatory protein (qutR) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-51  175.6  28.4    1.3e-51  175.4  28.4    1.0  1  Bax1-I    Inhibitor of apoptosis-promoting Bax1


Domain annotation for each model (and alignments):
>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.4  28.4   7.1e-56   1.3e-51       1     207 []      72     273 ..      72     273 .. 0.94

  Alignments for each domain:
  == domain 1  score: 175.4 bits;  conditional E-value: 7.1e-56
      Bax1-I   1 raflrkvYgllalgllltalvaavvlsspa.qlflslhivlflvvilaplalv.flslsaarlkkkssalalallllftlleGlslspillvytgaiil 97 
                 ++f+rkvY++l+l+ll ta+v+ ++++s++ +++++  + l+++++++ ++++ +  +++  +k+++++  l++l lft++e++s+s+i+++y+ +i+l
  CCE29821.1  72 NQFVRKVYTILTLQLLATAAVSSLTFFSDSyRNWIQARPLLVWISLIGAMIFMgL-TYWK--RKSYPTN--LLFLSLFTFAEAYSISVIVSFYKTSIVL 165
                 68***************************99999999999999999999999855.4443..3445555..**************************** PP

      Bax1-I  98 qaflltaaifgglslyalttkrdlsglggflfagligliiaslvnlFlp.ssalelaisylgvllfsglilyDtqkiierageygeedailaalsLyld 195
                 +a++lta+if+ l+l+a++tk+d++++ ++lf +l++l++++++ +F+p  s+ el+++ + +l+fs++il+Dtq++++ +++++ee  i+aa+sLyld
  CCE29821.1 166 NAVVLTAGIFIFLTLFACQTKYDFTSWMPYLFGALWALVLFGFMAMFFPyNSTAELIYGGVTALIFSAYILVDTQLVMR-HHHVEEE--IAAAISLYLD 261
                 **************************************************8889************************7.799****..********** PP

      Bax1-I 196 finlFlslLril 207
                 +inlFl +Lril
  CCE29821.1 262 IINLFLAILRIL 273
                 **********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2407.54
//
Query:       CCE29822.1  [L=472]
Description: related to protein LAC1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-48  164.3  19.9    2.8e-48  164.3  19.9    2.0  2  TRAM_LAG1_CLN8  TLC domain
    1.2e-18   66.5   0.2    1.2e-18   66.5   0.2    2.3  3  TRAM1           TRAM1-like protein


Domain annotation for each model (and alignments):
>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.4     0.029   2.6e+02      10      65 ..      70     129 ..      61     151 .. 0.62
   2 !  164.3  19.9   3.2e-52   2.8e-48       1     198 []     157     386 ..     157     386 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.029
  TRAM_LAG1_CLN8  10 vqyllstvfglivlsssp.....elwegyperilgathfllkayyllalgYfiydllvlll 65 
                       +l++++++l +l+++      ++ ++   +  ++++ + ++ + ++ +Yfi+  +vl+ 
      CCE29822.1  70 QISLSANLLALLFLCHNLipkarSHTQK-YFQLAYYNERSGEYGIGFEDAYFISFCIVLFT 129
                     5566667777777777766654222222.33444666777777778888888876555553 PP

  == domain 2  score: 164.3 bits;  conditional E-value: 3.2e-52
  TRAM_LAG1_CLN8   1 kfdervvslvqyllstvfglivlsssp......elwegyperilgathfllkayyllalgYfiydllvlllyekkrkdfvemliHhiitlvllvl 89 
                     +f+e+++ lv+y++++++g++++++sp      elw+++p+r++    +++k y+l ++++++++++v+++ e++rkd+++m+ Hhiit+vl++ 
      CCE29822.1 157 RFTEQAWLLVYYSVFWTMGMYIYCNSPyflnmrELWTTWPNREV---DWQMKGYVLAQWAFWLQQIIVINI-EERRKDHWQMFSHHIITTVLISS 247
                     69******************************************...68**********************.667779***************** PP

  TRAM_LAG1_CLN8  90 syvrnlgrvglvvlllhelsdpflnlrkilsylkkkskssklvlfngllfllsFfvcRlvllpylillsildvaklslstap............. 171
                     +y+++++rvg ++l++++++d fl ++k+l+y+ ++  ++++v+f   +f+l ++v+R+vl+ + +++s++++  + ++ ++             
      CCE29822.1 248 CYCYHHTRVGNLILVIMDVVDLFLPAAKCLKYA-GY-NTICDVMF--GVFMLAWLVARHVLYVM-VCWSVYAHTLVTMPVGCfrgpndnligped 337
                     *********************************.77.788*****..***************77.66666667768888888************* PP

  TRAM_LAG1_CLN8 172 ......................lwlpliflilllvLqllnlyWfylivk 198
                                            ++ ++fl+ ll+Lq + +yWf++iv+
      CCE29822.1 338 sppgvmwliepfinstgrvcanETVKWVFLVPLLTLQGITIYWFTMIVR 386
                     **********************9************************97 PP

>> TRAM1  TRAM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.2   1.4e-22   1.2e-18       1      64 []      95     153 ..      95     153 .. 0.97
   2 ?   -3.9   0.8       1.3   1.2e+04      32      40 ..     165     173 ..     163     174 .. 0.81
   3 ?   -3.2   0.6      0.78     7e+03      39      46 ..     297     304 ..     281     313 .. 0.55

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 1.4e-22
       TRAM1   1 tskFifLsynvplsansetglYgkGlkDlafvffyvivftflRaflmeyvlrPlarrlgikkkk 64 
                 t+k+++L y     +n+ +g+Yg+G+ D++f+ f++++ft lRa +meyvl+P+ar  g++kkk
  CCE29822.1  95 TQKYFQLAY-----YNERSGEYGIGFEDAYFISFCIVLFTLLRAGCMEYVLAPFARMQGVTKKK 153
                 67999****.....************************************************97 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.3
       TRAM1  32 vffyvivft 40 
                 +++y +++t
  CCE29822.1 165 LVYYSVFWT 173
                 689999998 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.78
       TRAM1  39 ftflRafl 46 
                 + + R +l
  CCE29822.1 297 WLVARHVL 304
                 44444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.55
# Mc/sec: 2579.88
//
Query:       CCE29823.1  [L=1014]
Description: related to long-chain fatty-acid-CoA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-83  280.6   0.2    5.8e-83  278.8   0.2    1.7  1  AMP-binding     AMP-binding enzyme
    7.5e-19   68.5   0.1    5.7e-18   65.7   0.1    2.5  1  AMP-binding_C   AMP-binding enzyme C-terminal domain
    1.5e-13   51.2   0.0    3.5e-13   50.0   0.0    1.5  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.8   0.2   9.7e-87   5.8e-83       2     422 ..     372     873 ..     371     874 .. 0.84

  Alignments for each domain:
  == domain 1  score: 278.8 bits;  conditional E-value: 9.7e-87
                  HHHHHHSTTSEEEEE.....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHT CS
  AMP-binding   2 eeqaaktpdkvalvd.....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledse 94 
                  ++ + ++ d +a++      +++ +tlTY+ ld  +nrlA+ L slGv kgdrVai l n++e+ ++ +a+ k+Gav+vplnp+++a +++ +l++ +
   CCE29823.1 372 AHIVSQYGDCPAVIArsptpRASETTLTYHMLDLLSNRLASSLASLGVVKGDRVAISLGNTAEFAALTYACYKLGAVLVPLNPGFQASQVEAALRHLG 469
                  566789999999999999998999************************************************************************** PP

                  ESEEE...................................E.TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS........ CS
  AMP-binding  95 akvli...................................a.tvdselleklleaaakleavklvivldadellkeeelkeeeeseekae........ 148
                  a++li                                   + +++++            ++ k viv+d+ ++ +              +        
   CCE29823.1 470 ARTLIigavtdlayrpgrgrsnealldevlqghilrgsgaTiETERI------------PTLKRVIVVDNRASHE--------------Gvrfaleec 541
                  *****999999988888777777666655544443333221233333............3333333333322222..............022233333 PP

                  ...............-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EE CS
  AMP-binding 149 ...............kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatv 231
                                   e++++l+++d+++i++TSGTT +PK++ml+h ++++n   +   +r +l+++d +++  pl+h+fg+il+ +++ + Ga++
   CCE29823.1 542 rvltpytsllegserGVEPSQRLDAHDTINIQFTSGTTSTPKAAMLTHHSILNNGIFI--AHRMGLEPRDMMVVPPPLFHCFGCILGYMATATTGAAI 637
                  3344456666777774446779********************************6664..6779999******************************* PP

                  EE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEE.C CS
  AMP-binding 232 vllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggeplspellrffralfge.evlegYGlTEttgvvtv.l 327
                   +++  +a+dp + l+++ ++++t ++gv ++l a+l++ +++  k+a    +lr  +++g++++++l++ +++++g   ++ +YG+TEt++v ++ +
   CCE29823.1 638 LFPS--PAFDPVATLKMCVDHNATGLYGVSTMLSAVLDALDKD--KDAAPPAHLRKGIVAGSSVPESLMKTIYERLGLrDLVICYGMTETSPVSCMtA 731
                  9977..55787788899999****************9954444..23334456***********************9999**************6667 PP

                  HCTTTCTSTTS-BEE-TTEEEEEE-TTTS.CBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE................................. CS
  AMP-binding 328 pleedkkklgsvGkplpgvevkivDeetg.epvpdgeeGellvrgpgvmkgYlkkpeataeafds................................. 391
                  p +  +++ ++vG+plp++ vkivD+ +  + vp g  Gel   g  vmkgY++++++ta++ ++                                 
   CCE29823.1 732 PSDPFHQRCSTVGTPLPHTSVKIVDPLDRaRVVPLGMRGELAAAGYLVMKGYFGDEAKTADVRVEeadcipthdgaasrasqlnsantntksststsi 829
                  7788888999***************965515669****************************997899****************************** PP

                  ............T.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 392 ............e.grwlrTGDlgrldedGyleivgRkkdlikl 422
                                  wl +GD +++d+ G + i+gR+kdli++
   CCE29823.1 830 qkddspdgkstkTlTTWLYSGDQATMDQHGFITITGRLKDLIIR 873
                  *********9963556**************************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.1   9.5e-22   5.7e-18       1      76 []     882     990 ..     882     990 .. 0.87

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 9.5e-22
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---...---...............................HHHHHHHHHHHHT-TTTS-SE CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg...sea...............................leeeLkahvrkelgpyavpkk 62 
                    e+E++l++hp+Va++ VvGvpde  Gea++afV++++g   + a                               + +e +++vr +l ++ vpk+
     CCE29823.1 882 EIENCLLQHPGVAQVSVVGVPDEQLGEAVAAFVIPSRGwetQ-AadadatvgklqdggggggggdetarrgdnilTVREARDWVRGRLSSHLVPKY 976
                    8**********************************7755431.12345566666777777777777889999************************ PP

                    EEE-S---B-TTS- CS
  AMP-binding_C  63 vvfvdelpktrsGK 76 
                    v  vde+pkt+sGK
     CCE29823.1 977 VFWVDEFPKTASGK 990
                    *************9 PP

>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   5.8e-17   3.5e-13       6      87 ..     104     180 ..     100     192 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 5.8e-17
  Gly_transf_sug   6 kaieslakahpdyqvvvlskelekvrvaildlefllsdtpwfeeakkllplfialsDllRlaiLykyGGiYlDtDvivlksl 87 
                     ++  s+  +hp + + v+++++    v++l+l   + + p+++ea+++lpl++ ++Dl+R++iL++ GGiY+D+D+  +ks 
      CCE29823.1 104 EQEASWTLQHPGFVHEVITDDVA---VSMLNLF--YASVPEVLEAYHALPLPVLKADLFRYLILLARGGIYSDIDTYAIKSA 180
                     55679999************977...7777764..4447999***********************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 6892.20
//
Query:       CCE29824.1  [L=312]
Description: probable nicotinate-nucleotide pyrophosphorylase (carboxylating) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-58  195.9   0.3    5.1e-58  195.6   0.3    1.1  1  QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal
    2.8e-15   56.1   0.0    3.2e-14   52.7   0.0    2.7  2  QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal
     0.0033   17.2   0.1     0.0046   16.8   0.1    1.2  1  PRAI       N-(5'phosphoribosyl)anthranilate (PRA) isomerase
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.24   11.5   0.0    1.5  1  DUF5496    Family of unknown function (DUF5496)


Domain annotation for each model (and alignments):
>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.6   0.3   1.1e-61   5.1e-58       1     169 []     135     309 ..     135     309 .. 0.98

  Alignments for each domain:
  == domain 1  score: 195.6 bits;  conditional E-value: 1.1e-61
                 HHHHHHHHHHHHHCT..SSEEEE-S---TTTHHHHHHHHHHTTSB--TSSTTTSEEE-HHHHHHHSSHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHH CS
   QRPTase_C   1 iAtltarmveaaksa..kvrildTRkttPglrllekyAvliGGgdnhrlgLsdmvlikdnhiaaagsiveavksvreavdkevkievevesleeleevl 97 
                 iAt++a+mv+ +++a  k  +++TRkttPg+rl+eky +liGG+d hr++Ls+mv++kdnh++  gsi+eav ++r+++++ +kievev+s+ee++e++
  CCE29824.1 135 IATQSAHMVRLVRQAgyKGILAGTRKTTPGFRLVEKYGMLIGGADAHRMDLSSMVMLKDNHVWSRGSITEAVAAARAVAGFSLKIEVEVQSEEEADEAI 233
                 9*************999********************************************************************************** PP

                 HHT-SEEEEES--HHHHHHHHHHHHHHSTT....SEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB----EEEE CS
   QRPTase_C  98 eaeadiimLDnfsveelkkaveelkeknkr....vlievSGgvtlenveeyaksgvdvisvgalthsvkalDislk 169
                 +a+ad++mLDnf+ e ++ a+ +l+e++      +l+evSGg+t env++y + ++d+is+++++++v+ +D+slk
  CCE29824.1 234 AAGADVVMLDNFTGEGVRVAARSLRERWMGkgqhFLLEVSGGLTAENVAAYVCNDIDIISTSSIHQGVPHVDFSLK 309
                 ************************9888767889****************************************97 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   7.2e-18   3.2e-14      13      89 .]      50     133 ..      46     133 .. 0.87
   2 ?   -2.2   0.0      0.97   4.3e+03      26      43 ..     151     168 ..     138     186 .. 0.75

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 7.2e-18
                 CTTSEEEEEEEESSSEEE-SHHHHHHHHHHHTTTEEEESS-TT-EE........ETTEEEEEEEEEHHHHHHHHHHHHHHHHHHH CS
   QRPTase_N  13 peekkakaeiiakeegvvaGlevaeevfellpglevellvkDGerv........ekgdvlleieGnarallsaERvaLnllqrlS 89 
                  +++  +a++ ak++g++aG ++++evf++  g+ v+++ ++ +++        + + ++++i+G+ara+l +ERvaLn l r+S
  CCE29824.1  50 VGDHARTATLWAKSSGILAGRPFFDEVFRQT-GCVVTWHLPEASQLdipgtdspRTKIKCATISGPARAILLGERVALNTLARCS 133
                 5788899************************.**********998833333322456689***********************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.97
                 SSEEE-SHHHHHHHHHHH CS
   QRPTase_N  26 eegvvaGlevaeevfell 43 
                  +g++aG+      f+l+
  CCE29824.1 151 YKGILAGTRKTTPGFRLV 168
                 468999988877777776 PP

>> PRAI  N-(5'phosphoribosyl)anthranilate (PRA) isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1     1e-06    0.0046      96     174 ..     217     307 ..     200     312 .] 0.65

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1e-06
                 TTSEEEEEEE-SSS--S-SSTT-..SEEEEESSS-SSSXXXXGGGGTTSXX...TTEEE..ESSXXTTTHHHHHT............TXXSEEEEX CS
        PRAI  96 vikalkvaesvdevkearradhv..dllllDsgaGGtGelldwsliskllks..lkviL..AGGLtpeNvaeaik...........legvlgvDvs 174
                 +  +++v++    ++ea +a ++  d+++lD+ +G +G+++   ++ +      ++++L   GGLt+eNva  +             +gv  vD+s
  CCE29824.1 217 LKIEVEVQS----EEEADEAIAAgaDVVMLDNFTG-EGVRVAARSLRERWMGkgQHFLLevSGGLTAENVAAYVCndidiistssiHQGVPHVDFS 307
                 333333333....34444443333499*****776.*********99876556755554449*********9987666666666666666666666 PP

>> DUF5496  Family of unknown function (DUF5496)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.3e-05      0.24       5      32 ..      77     104 ..      75     110 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.3e-05
     DUF5496   5 fkdtsgvvlftlpnpselevpgpeqpit 32 
                 f++t  vv + lp+ s+l++pg + p t
  CCE29824.1  77 FRQTGCVVTWHLPEASQLDIPGTDSPRT 104
                 899*********************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2363.04
//
Query:       CCE29825.1  [L=102]
Description: uncharacterized protein CPUR_03672 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 781.66
//
Query:       CCE29826.1  [L=260]
Description: uncharacterized protein CPUR_03673 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-21   76.5   0.0    2.1e-21   76.2   0.0    1.1  1  DDE_Tnp_4    DDE superfamily endonuclease
    1.2e-08   34.9   0.0    1.7e-08   34.4   0.0    1.2  1  DDE_Tnp_1    Transposase DDE domain
  ------ inclusion threshold ------
      0.013   15.1   0.0      0.028   14.0   0.0    1.5  1  Plant_tran   Plant transposon protein
      0.028   14.8   0.1       0.05   14.0   0.1    1.4  1  DDE_Tnp_1_2  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   4.8e-25   2.1e-21       1     158 []      32     187 ..      32     187 .. 0.88

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 4.8e-25
   DDE_Tnp_4   1 iDgteipiqrpsnleeraqtysnykkkntlkvlivvdpngkiifvskgypGsvsDkeilensgllkalkeavkpg.dvilaDkgFklse.kllvpykk. 96 
                 +Dg +ip+++ +   ++ + + n+k+ ++ +vl ++d +  i+f + gy+Gs++D ++l + +     k  v pg ++ laD g+  ++ +llvpy++ 
  CCE29826.1  32 LDGAHIPVRTTK---IDPAPWRNRKGFYSQNVLYACDFDTMIVFAQPGYEGSAHDGTVLCKATDNGF-K--V-PGsHYYLADGGYSKKDrRLLVPYREv 123
                 69******9988...599****************************************988876666.3..3.566**********9996788***999 PP

   DDE_Tnp_4  97 .kkkkqlseeevefnraiasarihvErvigrlkgrfrilrsrlrikl.vekidkivkvccvLhN 158
                     k+  ++e+ fn ++a+ r +vErvig +k+r+rilr   ++ + +++    v+++++ hN
  CCE29826.1 124 aDAAKRPATKEELFNLRHARLRNVVERVIGIMKKRWRILRDGPEQGFtMHQQSLFVYALAAVHN 187
                 87777778999****************************6665555458888889999999998 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.9e-12   1.7e-08       7     193 ..      30     164 ..      25     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3.9e-12
   DDE_Tnp_1   7 livDattvrvpgtkedarw.gykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrpr.kgklvlaDaGYasaelldtleekgvdyi 103
                  ++D+ +++v++tk    +  + + k++y +++  a+d  + ++ ++    g+ hd ++l    d   +   ++++laD+GY++++ +  +        
  CCE29826.1  30 GALDGAHIPVRTTK--IDPaPWRNRKGFYSQNVLYACDFDTMIVFAQPGYEGSAHDGTVLCKATDNGFKVpGSHYYLADGGYSKKDRRLLVP------- 119
                 67999999999999..3333588999**************9988888888************999998889***********8555555555....... PP

   DDE_Tnp_1 104 irlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrl 193
                                      ++ +d  k + ++++++n                          + +rlR ++Erv++ +k +++++r 
  CCE29826.1 120 --------------------YREVADAAKRPATKEELFNL-------------------------RHARLRNVVERVIGIMKKRWRILRD 164
                 ....................47889999999999999999.........................9********************9985 PP

>> Plant_tran  Plant transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.2e-06     0.028     117     180 ..     101     172 ..      85     196 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.2e-06
  Plant_tran 117 ayyladGiypk........watlvksirlpqlekkklfaqkqeaarkdverafGvlqarfkivak.parlwek 180
                  yyladG y k        +  +  + + p + k++lf  +    r  ver  G+++ r++i+++ p + +  
  CCE29826.1 101 HYYLADGGYSKkdrrllvpYREVADAAKRP-ATKEELFNLRHARLRNVVERVIGIMKKRWRILRDgPEQGFTM 172
                 59*******983333333334444555555.46889**************************97524444555 PP

>> DDE_Tnp_1_2  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.1e-05      0.05      33      67 ..     128     163 ..     104     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
  DDE_Tnp_1_2  33 kn.kaapkkqarederarnvvErsfgwlkrrrslat 67 
                  k+  +++  +  + +r rnvvEr +g +k+r ++ +
   CCE29826.1 128 KRpATKEELFNLRHARLRNVVERVIGIMKKRWRILR 163
                  333457778999******************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2081.19
//
Query:       CCE29827.1  [L=380]
Description: uncharacterized protein CPUR_03674 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        1.1   10.1  11.4        1.7    9.5   6.1    2.5  2  WRNPLPNID      Putative WW-binding domain and destruction box


Domain annotation for each model (and alignments):
>> WRNPLPNID  Putative WW-binding domain and destruction box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   6.1   9.7e-05       1.7      12      62 ..      44     100 ..      43     103 .. 0.53
   2 ?    2.8   0.2     0.012   2.2e+02      40      62 ..     132     152 ..     120     156 .. 0.46

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 9.7e-05
   WRNPLPNID  12 PLPeidl.eLeeLllldse.......aeessege..svdedeeaeee....eeeeeeeedeedsg 62 
                 PLP+ ++ eLeeL    ++       +   + ++  + +e +    +    e+ eeee+ +e+++
  CCE29827.1  44 PLPSPSDtELEELEDVSARagsprlnE---D-QRaeTSNERG----QiehhEDVEEEEDGSEEDD 100
                 9************96666577653221...2.2212222222....1334455555554444443 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.012
   WRNPLPNID  40 dedeeaeeeeeeeeeeedeedsg 62 
                 ++++ +  e+ ee++   +e+s+
  CCE29827.1 132 ERCQTEHHEDVEEDDG--SEESD 152
                 2333333333333333..44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3072.53
//
Query:       CCE29828.1  [L=983]
Description: related to inositol polyphosphate 5-phosphatase ocrl-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-05   23.9   0.0    4.2e-05   23.2   0.0    1.4  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.3e-09   4.2e-05       1     206 [.      49     431 ..      49     449 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.3e-09
                    EEEEESTG...................CHHHHTHHHHHHHHHHHHHHCTT................SEEEEEEEBSCTCHHHHHHHHH...TTCEE CS
                    xxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxx...xxxxx RF
  Exo_endo_phos   1 ltwNvngq...................aspalgssrrsdrladlltayda................DvlgLQEvdddelsriplllal...ggflg 58 
                    +twNv  +                   +  a+ +  r++++a  l+a +                 +vlgLQEv d  l       a         
     CCE29828.1  49 GTWNVAACpgtdkdlarwfvggegidqK-FAALDLSRNAAVAHNLSAGNEdgpdsirllggsdigmYVLGLQEVVDLNLTKEYMSRAVkldS---- 139
                    69*****755554444444444444431.22222223444444444443355666666666666666******5555554443333224440.... PP

                    EEECCH...................................................ECSSSTTSSEEEEEECSTE...EEEEEEEEEETSSSSGC CS
                    xxxxxx...................................................xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  59 asstsp...................................................tgggggggnggavlsrfpl...tslfrrtfiefndlvaa 100
                         +                                                   tg  g+ gn+gav  r  l   t++              
     CCE29828.1 140 -----SstdkwqaaleaamppgyklvsseqmtglvlliyasadvaptitnvstkavgTGVLGYFGNKGAVTTRLVLgetTRM-------------- 216
                    .....1334456666666666677777788888888888888888899999999**********************998888.............. PP

                    EEEEEEEEEEEEEEECCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEE............................................... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................... RF
  Exo_endo_phos 101 lrreplaakleqlniashrdhdlvrdlqllalllqvealnadrgapviv............................................... 149
                                                                  v+v                                               
     CCE29828.1 217 ----------------------------------------------VFVnchlasgvgsgyldrrcwdinqilsktkfdpvvhagvsedegekigd 266
                    ..............................................999*********************************************** PP

                    ......EEE-SSSTSGGGBSCGHHHHHHCTTTHHSSCESCETTTTTTTTTTTEB-B........................................ CS
                    ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................ RF
  Exo_endo_phos 150 ......aGDfNarpsdddsrvlrtrglalapapvglyllgggptptyvtraggsrl........................................ 199
                          +GD+N+r ++ +  ++r                               r+                                        
     CCE29828.1 267 edfafwFGDLNFRLDSLPGDDIR-------------------------------RIltlhtrgeyglsndkapqsiegegvvimrnsesdddaalk 331
                    ************88887777777...............................556777777777777777777777777777777777777777 PP

                    .............................................................................................EEE CS
                    .............................................................................................xxx RF
  Exo_endo_phos 200 .............................................................................................Dri 202
                                                                                                                 Dri
     CCE29828.1 332 sslhcreqsfdshttlpdpdefpddpsqdptslqatldsllphdqlrramtqrkvfhdgwregpisflptykydvgsialfdssekqrapswcDRI 427
                    777777777777777777777777777777777777777777777777777777788777778888888888888888888888888888888888 PP

                    EEEC CS
                    xxxx RF
  Exo_endo_phos 203 lasp 206
                    l+++
     CCE29828.1 428 LFRT 431
                    8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (983 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.40
# Mc/sec: 7353.31
//
Query:       CCE29829.1  [L=223]
Description: uncharacterized protein CPUR_03676 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-33  115.2   0.0    1.9e-33  114.8   0.0    1.1  1  DCP1      Dcp1-like decapping family


Domain annotation for each model (and alignments):
>> DCP1  Dcp1-like decapping family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.0   1.1e-37   1.9e-33       2     115 ..      45     169 ..      44     171 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 1.1e-37
                 HHHHHHHHHHH-TTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEE.....TT.S-EEEEEEESSSS--EEEEESSGGGEEEETTEEEEEETTT CS
        DCP1   2 kelnlrvLqrldpsiesildtashvvlYkfnessqeWektdieGtLfvvkr.....skepryglivlNrkslenliedltkelelelqgeyliyrteee 95 
                 +eln++vLqr+ psi++il++a+++v+Y f++s+ +Wekt++eGtLfv+ +     +++pr +++vlNr+ l+nl+ dl+   ++el ge++i+++e +
  CCE29829.1  45 TELNVNVLQRHVPSIHTILSIAANAVIYDFDSSKVRWEKTGFEGTLFVCAQtplpgRSRPRACVFVLNRRALDNLVVDLAMVAHVELLGEVIILQVEGN 143
                 79*************************************************88888779**************************************** PP

                 ......EEEEEEESSHHHHHHHHHHH CS
        DCP1  96 ......evfgiWfyeeedreriasll 115
                       +v+giW+++++d++r ++++
  CCE29829.1 144 hwtedgKVIGIWIHNDRDETRQVNFV 169
                 ********************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1823.59
//
Query:       CCE29830.1  [L=168]
Description: uncharacterized protein CPUR_03677 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1375.53
//
Query:       CCE29831.1  [L=261]
Description: probable cytosceletal binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-66  224.8   2.3    1.4e-66  224.5   2.3    1.1  1  BAR       BAR domain
  ------ inclusion threshold ------
      0.078   13.4   0.4       0.22   12.0   0.4    1.7  1  SVIP      Small VCP/p97-interacting protein


Domain annotation for each model (and alignments):
>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.5   2.3   1.6e-70   1.4e-66       1     238 [.       6     229 ..       6     230 .. 0.99

  Alignments for each domain:
  == domain 1  score: 224.5 bits;  conditional E-value: 1.6e-70
         BAR   1 lkKafnRasqlleekvgkaekTkLDedFeelerrldvteklieklvkelkeylqanpgarakqivleklkeqplelLaesmieagkelgedssfgkale 99 
                 +kK++nRa+ ++++k+g++ekT+ D+d+e +err++++e+++ +l+ke+k+yl+++++++a+q+            +ae++  ++ e g +++   ++ 
  CCE29831.1   6 FKKNVNRATTQVMMKTGHVEKTN-DRDYEVEERRFKTMEAASLRLQKEAKGYLDSLRAMTASQM-----------RIAETIDSFYGESGARDG---VSR 89 
                 89*********************.****************************************...........******************...9** PP

         BAR 100 kygeavkkl.aqteeelekrvetnfldplrellekefkeiqkerkklehkrlDyDaakarlkklktkkskkakdeekaeeelrkAqqkfeesneelkae 197
                 +y+eav +l a+t + l+++++t++ldp+ +++ ++f+++++++kk++hk+lDyDa ++++kkl +k +k+a++ ++ e+el++A+ ++e++n++l++e
  CCE29831.1  90 SYKEAVGDLdAETIKALDGPYRTTVLDPISRFC-AYFPDVNECIKKRSHKLLDYDALRSKVKKLVEKPDKDATKLPRTEKELEMARVAYEQLNDQLSTE 187
                 *********99**********************.***************************************99************************ PP

         BAR 198 Lpnllalevefv.nqlqafveaqldfhkqaaqlleqlqqqls 238
                 Lp+l++l+v+++ ++++a+v++ql+f+++a+++++q+qq+l+
  CCE29831.1 188 LPQLIDLRVPYLdPTFEALVKIQLRFCAEAYSRMAQVQQYLD 229
                 ***************************************997 PP

>> SVIP  Small VCP/p97-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   2.4e-05      0.22      15      46 ..      28      58 ..      20      76 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.4e-05
        SVIP 15 eeetpdaeerRrqqaEAAekRqeeqesRGikn 46
                ++ + ++eerR + +EAA  R + ++ +G  +
  CCE29831.1 28 NDRDYEVEERRFKTMEAASLRLQKEA-KGYLD 58
                3567899**************98776.77655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1068  (0.0595683); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1897.89
//
Query:       CCE29832.1  [L=210]
Description: related to aminoacyl-tRNA hydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-29  101.7   0.0    5.1e-29  101.4   0.0    1.0  1  Pept_tRNA_hydro  Peptidyl-tRNA hydrolase


Domain annotation for each model (and alignments):
>> Pept_tRNA_hydro  Peptidyl-tRNA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.0   2.8e-33   5.1e-29       2     150 ..      11     183 ..      10     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 2.8e-33
                      EEE---SSTCCTTCGGGHHHHHHHHHHHH........TCEEEE....EETTEEEEEEEESS-GGGHHHHHHHHHHHCT.-.-....GEEEEEEE CS
  Pept_tRNA_hydro   2 ivGLGNpgkeYektRHNvGflvvdelakk........aevaeg....kiegekvlllkPqtymNlsGeavkellkfyk.i.ese..eilvvhDd 79 
                      ++++GNp +eY +t H++G+  +  l k+        ++++++     +eg k++l+++ tymN sG+ v+ +++++  i e++  +++vvhD+
       CCE29832.1  11 LISIGNPLPEYTNTLHSAGHIGLIGLQKTlqlppfqtTKFTKKehymMTEGPKYTLVQSPTYMNISGRFVAGIWRHMMtIhEPSnlSLVVVHDN 104
                      789*****************99998887777777766333333566689999**********************966636333359******** PP

                      TTSSTTEEEEE.ESS--TT-HHHHHHHHHHT-S-SE.....EEEEEE---ST-CGG.HHHHCTSB-HHHHHC.HHHHHH CS
  Pept_tRNA_hydro  80 ldlplgkirlk.kkgssgghnGlksiikklgtekfv.....RlriGIgrpekakkk.vadyVLskfskeeek.leevle 150
                      +d  lg +rl     s +ghnGl s+ ++l++ +f+     R+ iGIgrp++++++ +++yVLsk+++e++k le+ + 
       CCE29832.1 105 IDRILGDVRLTaWDLSPRGHNGLVSVKAQLSQGSFPqspmlRMGIGIGRPPQRDSEtISNYVLSKMPSEKQKvLEQEVP 183
                      **********85678999************877764333338888889**9955555**********887764554333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1662.07
//
Query:       CCE29833.1  [L=380]
Description: probable ammonium transporter MEPa [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-101  340.3  28.4   1.4e-101  340.1  28.4    1.0  1  Ammonium_transp  Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.1  28.4    8e-106  1.4e-101       1     329 [.      31     362 ..      31     378 .. 0.97

  Alignments for each domain:
  == domain 1  score: 340.1 bits;  conditional E-value: 8e-106
                      HHHHHHHHHHHHHHHHHHHHHHHHSSGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCBSSSSSCE-......TTTTSCCGCCTTCCHHHHH CS
  Ammonium_transp   1 aflllsaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfign......lglsaagvqdetlldglff 88 
                      +fl++s++lv++m +g++++++gl r+k++l++++ +++++ vv ++++++Gysl+f++ + ++g+ig       ++   + +  +  +d+lf 
       CCE29833.1  31 VFLVISSVLVLLMIPGVGFFYSGLARRKSALQLILLSMISVSVVGFQWFFWGYSLVFSRGTAGKGLIGDlahfglMKTLGQPSGSGDAPDILFC 124
                      699******************************************************************999999888889999999******* PP

                      HHHHHHHHHHHHHHHHHCTTTB-HHHHHHHHHHHHHHTHHHHHHHHHS.SSHHHHTT--.-SSSTTTTHHHHHHHHHHHHHHHS-STTTTGTTT CS
  Ammonium_transp  89 lfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlgkregrfegke 182
                      l+q +faa++ ++  gava+r ++ + ++f++l++t+vy+p+a+w+w+ +gwl+klg+l DfAg++ VH+++gva+La+ ++lgkr+g  + + 
       CCE29833.1 125 LYQGMFAAITPALAIGAVADRGRILPAMVFIFLFATVVYCPIAYWTWNSNGWLNKLGAL-DFAGGGPVHICSGVASLAYSIMLGKRHGYSTSHG 217
                      ***********************************************************.******************************9999 PP

                      SS--GSBHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHH.HHHHHHHHHHHHHHHHHHHHHHHCSS-BHHHHHHHHHHHHHHHTTTTTTS-HHH CS
  Ammonium_transp 183 eaikghnlpfavlGtllLwfgWfgFNaGsaltankrararaavtTllAaaagaltallisrlkegkinvlglanGilAGlVAiTaacavvepwg 276
                        +++h+++ ++lGt++Lw+gWfgFN+Gsal++n ra   a+++T+lAa++ga+t+++++   e k++++g ++G+++GlVAiT+a+++v pw+
       CCE29833.1 218 LPYRPHSVTNVILGTVFLWVGWFGFNGGSALAINLRAIM-ACYVTNLAACCGAITWMVLDFRLERKWSTIGFCSGAVSGLVAITPAAGYVAPWS 310
                      9*************************************9.****************************************************** PP

                      HHHHHHHHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHHHHHTSHH CS
  Ammonium_transp 277 AliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaek 329
                      A+iiG+ +g+ ++l++k +k  +++dD+ld++avHgvgGi G++++g+f+ + 
       CCE29833.1 311 AVIIGIAGGACCNLATK-FKYLIGVDDALDIFAVHGVGGIAGGIMTGVFGSPI 362
                      ****************8.*******************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3124.11
//
Query:       CCE29834.1  [L=758]
Description: related to protein GRR1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-17   62.4  22.4      0.014   15.4   0.0   11.8 12  LRR_6       Leucine Rich repeat
    9.3e-14   51.1   0.5    4.2e-13   49.0   0.4    2.3  2  F-box-like  F-box-like
    2.6e-08   34.0  19.7       0.56   10.7   0.0    7.3  7  LRR_4       Leucine Rich repeats (2 copies)
    1.4e-07   31.2   0.0    1.1e-06   28.3   0.0    2.6  2  F-box       F-box domain
    0.00036   20.2   0.5        1.2    8.8   0.0    4.0  4  DUF1699     Protein of unknown function (DUF1699)
  ------ inclusion threshold ------
        4.4    7.2  12.1         13    5.6   0.2    5.4  5  LRR_8       Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1   0.00078       2.3       1      23 [.     166     189 ..     166     190 .. 0.93
   2 ?    2.5   0.1     0.064   1.9e+02       2      24 .]     193     216 ..     192     216 .. 0.81
   3 !    5.6   0.2    0.0065        19       2      24 .]     219     242 ..     218     242 .. 0.89
   4 ?    0.4   0.0      0.29   8.8e+02       2      24 .]     245     268 ..     244     268 .. 0.90
   5 !    6.6   0.0    0.0031       9.2       3      20 ..     298     315 ..     296     317 .. 0.86
   6 !   11.9   0.0   6.1e-05      0.18       4      23 ..     327     347 ..     326     348 .. 0.94
   7 ?    1.4   0.0      0.14   4.2e+02       4      23 ..     353     373 ..     351     374 .. 0.85
   8 !   15.4   0.0   4.8e-06     0.014       4      23 ..     379     399 ..     378     400 .. 0.93
   9 !    5.1   0.1    0.0094        28       2      23 ..     403     425 ..     402     426 .. 0.88
  10 !    6.7   0.0    0.0028       8.5       4      24 .]     430     451 ..     428     451 .. 0.76
  11 ?    0.2   0.0      0.35     1e+03       3      14 ..     475     486 ..     473     496 .. 0.81
  12 ?    0.9   0.1      0.21   6.4e+02       1      12 [.     499     510 ..     499     510 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00078
       LRR_6   1 snthLteLdLsgNd.IgDeGaeaL 23 
                 s+t ++ L L+ +  ++D+G+ aL
  CCE29834.1 166 SCTRVERLTLTNCRgLTDSGLVAL 189
                 58999******************9 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.064
       LRR_6   2 nthLteLdLs.gNdIgDeGaeaLa 24 
                 +++L +Ld+s +++I+ + + a+a
  CCE29834.1 193 SPSLLALDISnDCNITYKSILAIA 216
                 789999999856889999888886 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0065
       LRR_6   2 nthLteLdLsgNd.IgDeGaeaLa 24 
                 +  L+ L++sg+  I++e ++ La
  CCE29834.1 219 CKRLQGLNISGCVnISNESMIHLA 242
                 667888**************9997 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.29
       LRR_6   2 nthLteLdLsgNd.IgDeGaeaLa 24 
                 + +++ L L+ +  + D+ + a+a
  CCE29834.1 245 CKYIKRLKLNECVqLRDDAVLAFA 268
                 78899********9****999987 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0031
       LRR_6   3 thLteLdLsgNdIgDeGa 20 
                 ++L+eL L+g+++ D+Ga
  CCE29834.1 298 SCLRELRLAGCELIDDGA 315
                 68**********777776 PP

  == domain 6  score: 11.9 bits;  conditional E-value: 6.1e-05
       LRR_6   4 hLteLdLsgNd.IgDeGaeaL 23 
                 hL+ LdL+++  ++D+ +e++
  CCE29834.1 327 HLRILDLTSCTrLTDAAVEKI 347
                 9*****************998 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.14
       LRR_6   4 hLteLdLsgNd.IgDeGaeaL 23 
                  L+ L L+ +  I+D+ + a+
  CCE29834.1 353 RLRNLVLAKCRnITDVAVNAI 373
                 6999***********987766 PP

  == domain 8  score: 15.4 bits;  conditional E-value: 4.8e-06
       LRR_6   4 hLteLdLsgNd.IgDeGaeaL 23 
                 +L +++L +++ I+DeG+++L
  CCE29834.1 379 NLHYVHLGHCGqITDEGVKKL 399
                 799****************99 PP

  == domain 9  score: 5.1 bits;  conditional E-value: 0.0094
       LRR_6   2 nthLteLdLsgNd.IgDeGaeaL 23 
                 ++ +++ dL ++  ++D+ ++ L
  CCE29834.1 403 CNRIRYIDLGCCSnLTDDSIKRL 425
                 8899*************998877 PP

  == domain 10  score: 6.7 bits;  conditional E-value: 0.0028
       LRR_6   4 hLteLdLsgNd.IgDeGaeaLa 24 
                 +L+   L  ++ I+De + aLa
  CCE29834.1 430 KLKRIGLVKCNsITDESVFALA 451
                 566666666666********98 PP

  == domain 11  score: 0.2 bits;  conditional E-value: 0.35
       LRR_6   3 thLteLdLsgNd 14 
                 ++L+ ++Ls++ 
  CCE29834.1 475 PSLERVHLSYCV 486
                 789*******96 PP

  == domain 12  score: 0.9 bits;  conditional E-value: 0.21
       LRR_6   1 snthLteLdLsg 12 
                 s++ Lt+L+L+g
  CCE29834.1 499 SCPRLTHLSLTG 510
                 5899******86 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.4   1.4e-16   4.2e-13       1      46 [.      73     117 ..      73     119 .. 0.92
   2 ?   -3.6   0.0       3.7   1.1e+04      20      34 ..     237     251 ..     233     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.4e-16
  F-box-like   1 isrLPdEiLlqIFsyL.ppsdLlrlalVCrrWrrvaldtplLWrrlv 46 
                 isrLP+EiL+ IF  L  +sdL+ ++lV++rW+r a d  lLW+r+ 
  CCE29834.1  73 ISRLPNEILISIFAKLgATSDLYHCMLVSKRWARNAVD--LLWHRPA 117
                 689*************7888****************64..9****85 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.7
  F-box-like  20 dLlrlalVCrrWrrv 34 
                 +++ la  C++ +r+
  CCE29834.1 237 SMIHLAKSCKYIKRL 251
                 67789999**99875 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         1     3e+03      18      37 ..     163     182 ..     158     186 .. 0.72
   2 !    7.9   0.8    0.0014       4.2       1      33 [.     194     230 ..     194     239 .. 0.78
   3 ?    1.1   0.1       0.2   6.1e+02       6      33 ..     251     282 ..     248     295 .. 0.65
   4 !    6.9   0.0    0.0029       8.8       3      38 ..     300     341 ..     298     346 .. 0.78
   5 !   10.7   0.0   0.00019      0.56       1      38 [.     352     393 ..     352     398 .. 0.87
   6 !    7.9   0.2    0.0014       4.3       1      38 [.     378     419 ..     378     449 .. 0.77
   7 !   10.1   0.1   0.00029      0.85       1      32 [.     475     510 ..     475     515 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1
                 -HHH-TT--EEE-.-S---- CS
       LRR_4  18 lleklpnLkeLdLsgNnlit 37 
                 +l++++  + L+L+++  +t
  CCE29834.1 163 PLASCTRVERLTLTNCRGLT 182
                 46679999999997775555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0014
                 SS--EEE--.SS---E-S-.HH...H-TT--EEE-.-S CS
       LRR_4   1 pnLevLdLs.nNqltdipl.le...klpnLkeLdLsgN 33 
                 p+L  Ld+s ++++t   + l+   +++ L+ L++sg+
  CCE29834.1 194 PSLLALDISnDCNITYK-SiLAiaqNCKRLQGLNISGC 230
                 67888****77****44.44556657*********997 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.2
                 EE--SS.---.E-S-.HH.H-TT--EEE-.-S CS
       LRR_4   6 LdLsnN.qlt.dipl.le.klpnLkeLdLsgN 33 
                 L L+ + ql+ d  l ++ ++pn  e+dL ++
  CCE29834.1 251 LKLNECvQLRdDAVLaFAeQCPNILEIDLYQC 282
                 55665556663333353347********9665 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0029
                 --EEE--SS---.E-S-HHH-TT......--EEE-.-S----- CS
       LRR_4   3 LevLdLsnNqlt.diplleklpn......LkeLdLsgNnlitd 38 
                 L++L L+++ l  d  +l+ lp+      L+ LdL++++++td
  CCE29834.1 300 LRELRLAGCELIdDGAFLN-LPDkrvyehLRILDLTSCTRLTD 341
                 99******96551655566.777777777******99999987 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00019
                 SS--EEE--SS.---E-S-..HHH.-TT--EEE-.-S----- CS
       LRR_4   1 pnLevLdLsnN.qltdipl..lek.lpnLkeLdLsgNnlitd 38 
                 p+L++L L+ + ++td+    +++  +nL++++L ++ +itd
  CCE29834.1 352 PRLRNLVLAKCrNITDVAVnaISNlGKNLHYVHLGHCGQITD 393
                 79*******9978**99998866778********99989887 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.0014
                 SS--EEE--SS.---E-S-..HH.H-TT--EEE-.-S----- CS
       LRR_4   1 pnLevLdLsnN.qltdipl..le.klpnLkeLdLsgNnlitd 38 
                 +nL +++L+++ q+td +   l  ++   +++dL  ++++td
  CCE29834.1 378 KNLHYVHLGHCgQITDEGVkkLVhSCNRIRYIDLGCCSNLTD 419
                 689999999998899988877664588899999833444544 PP

  == domain 7  score: 10.1 bits;  conditional E-value: 0.00029
                 SS--EEE--SS.---E-S-....HHH-TT--EEE-.- CS
       LRR_4   1 pnLevLdLsnN.qltdipl....leklpnLkeLdLsg 32 
                 p+Le ++Ls + +lt + +    l+++p L++L+L+g
  CCE29834.1 475 PSLERVHLSYCvNLT-LKSimrlLNSCPRLTHLSLTG 510
                 79*******987888.7777887888********965 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   3.8e-10   1.1e-06       1      34 [.      71     105 ..      71     108 .. 0.96
   2 ?   -2.2   0.0       1.5   4.3e+03      20      33 ..     209     222 ..     206     223 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 3.8e-10
                 -HHHHS-HHHHHHHHHTS-HHH.HHHHCTT-HHHH CS
       F-box   1 ftlsrLPsevlrhILerLplsd.llalrrVSkgwr 34 
                 +++srLP+e+l  I+ +L+ ++ l  +++VSk+w 
  CCE29834.1  71 PPISRLPNEILISIFAKLGATSdLYHCMLVSKRWA 105
                 69********************************6 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
                 HHHHHHHCTT-HHH CS
       F-box  20 lsdllalrrVSkgw 33 
                  +++la+++ +k++
  CCE29834.1 209 YKSILAIAQNCKRL 222
                 589********997 PP

>> DUF1699  Protein of unknown function (DUF1699)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.68     2e+03      30      49 ..     209     228 ..     205     241 .. 0.81
   2 ?    0.0   0.0      0.21   6.2e+02      29      50 ..     234     255 ..     230     269 .. 0.80
   3 !    8.8   0.0    0.0004       1.2      10      49 ..     371     412 ..     360     444 .. 0.82
   4 !    5.7   0.0    0.0038        11      20      48 ..     478     508 ..     473     514 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.68
     DUF1699  30 ntdilslvkkcpklkaiqvp 49 
                 ++ il++ ++c++l+ ++++
  CCE29834.1 209 YKSILAIAQNCKRLQGLNIS 228
                 57899999999999988876 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.21
     DUF1699  29 sntdilslvkkcpklkaiqvpe 50 
                 sn+ +++l k+c+ +k +++ e
  CCE29834.1 234 SNESMIHLAKSCKYIKRLKLNE 255
                 7788888888888888877765 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0004
     DUF1699  10 eeietlnenekivHlafrpsntd..ilslvkkcpklkaiqvp 49 
                 + i++l +n ++vHl ++   td  + +lv++c +++ i + 
  CCE29834.1 371 NAISNLGKNLHYVHLGHCGQITDegVKKLVHSCNRIRYIDLG 412
                 5799**************98776669************9886 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0038
     DUF1699  20 kivHlafrpsn..tdilslvkkcpklkaiqv 48 
                 + vHl+++ +   + i++l+++cp+l  + +
  CCE29834.1 478 ERVHLSYCVNLtlKSIMRLLNSCPRLTHLSL 508
                 679*****9852269**********998765 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.049   1.5e+02       3      58 ..     170     229 ..     168     231 .. 0.69
   2 ?   -0.6   0.1      0.38   1.1e+03      19      25 ..     314     320 ..     298     341 .. 0.57
   3 ?    5.6   0.2    0.0044        13       1      34 [.     352     387 ..     352     411 .. 0.87
   4 ?    1.9   0.1     0.063   1.9e+02      22      56 ..     400     436 ..     378     442 .. 0.57
   5 ?    1.3   0.1       0.1     3e+02      26      58 ..     476     510 ..     471     510 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.049
                 -SEEE-TTS-.-SEE-TTSSTT.-TT--EEE--SS.---GGG.GGGGTT--S-.EEE--S CS
       LRR_8   3 LtsLdLsnNr.ltslddeaFkg.lsnLkvLdLsnN.llttls.pgafsgLpsLrsLdLsg 58 
                 +++L L+n r lt+ +  a  +  ++L  Ld+sn  ++t  s     +++++L+ L++sg
  CCE29834.1 170 VERLTLTNCRgLTDSGLVALVTnSPSLLALDISNDcNITYKSiLAIAQNCKRLQGLNISG 229
                 677888888888887777776668999999999987777644134445677777777776 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.38
                 TSSTT-T CS
       LRR_8  19 eaFkgls 25 
                 +aF +l+
  CCE29834.1 314 GAFLNLP 320
                 4444443 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0044
                 TT-SEEE-TTS-.-SEE-TTSSTT.-TT--EEE--S CS
       LRR_8   1 pnLtsLdLsnNr.ltslddeaFkg.lsnLkvLdLsn 34 
                 p+L++L+L + r +t++   a ++  +nL + +L++
  CCE29834.1 352 PRLRNLVLAKCRnITDVAVNAISNlGKNLHYVHLGH 387
                 79**********************889999999987 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.063
                 TT.-TT--EEE--SS.---GGGGGGGTT--S-.EEE- CS
       LRR_8  22 kg.lsnLkvLdLsnN.llttlspgafsgLpsLrsLdL 56 
                  + +++ +++dL++  +lt  s + +s Lp+L+ + L
  CCE29834.1 400 VHsCNRIRYIDLGCCsNLTDDSIKRLSLLPKLKRIGL 436
                 3335566666666544666666666666666666665 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.1
                 T--EEE--S..S.---GGGGGGGTT--S-.EEE--S CS
       LRR_8  26 nLkvLdLsn..N.llttlspgafsgLpsLrsLdLsg 58 
                 +L+  +Ls+  N +l+++  + + ++p+L++L L+g
  CCE29834.1 476 SLERVHLSYcvNlTLKSI-MRLLNSCPRLTHLSLTG 510
                 566666665445567777.78899999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 5992.66
//
Query:       CCE29835.1  [L=390]
Description: uncharacterized protein CPUR_03683 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-77  257.7   0.0    1.1e-76  257.2   0.0    1.2  1  Chalcone_2  Chalcone isomerase like
     0.0013   18.8   0.1      0.048   13.8   0.2    2.3  2  Chalcone_3  Chalcone isomerase-like


Domain annotation for each model (and alignments):
>> Chalcone_2  Chalcone isomerase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.2   0.0   1.2e-80   1.1e-76       1     204 []     169     371 ..     169     371 .. 0.97

  Alignments for each domain:
  == domain 1  score: 257.2 bits;  conditional E-value: 1.2e-80
  Chalcone_2   1 eeytLlGlGvRtVsflsiqVYvvGlYvaksdiaklqkvlqskllskkviattlvssekeelkkalldpekseelweellde.girtavrivPvrnTdfs 98 
                 +eytL+GlG+RtV+fl+iqVY vG+Yva++d+++lq+ l++k    +++a+tl++sek++l+kal+d++++e++w+++l+e g+r+a+r+vPvr+Tdf+
  CCE29835.1 169 TEYTLVGLGMRTVTFLGIQVYLVGFYVATQDVERLQHYLVKK---INPLASTLIPSEKDALRKALHDATEGEQTWDSILREaGCRSAFRVVPVRDTDFH 264
                 69*************************************999...8999******************************7549**************** PP

  Chalcone_2  99 hLrDGfvraitarakkkkeeeedeefgeslkefkslFnrkgsvpkgkeLlLerdangeLsvlyedkkkk...kleklGrvedervsrllwlnYLagkkv 194
                 hLrDGfvrai+ar+ ++ ++ +d++fg+++k+fk+lFnr g+vpk+keLlL+rda+g+L+v+y +++ k   + + +G+++der+srllwlnYLag+kv
  CCE29835.1 265 HLRDGFVRAIQARSGSD-KACNDDAFGAAMKDFKALFNR-GQVPKKKELLLSRDAQGKLDVMYGEGDLKinaPKSLMGTISDERLSRLLWLNYLAGNKV 361
                 *****************.699*****************9.*************************98888889999*********************** PP

  Chalcone_2 195 aseearksvv 204
                 ase+ar++++
  CCE29835.1 362 ASEGARNNII 371
                 *******986 PP

>> Chalcone_3  Chalcone isomerase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   5.3e-06     0.048      13      52 ..     164     206 ..     154     241 .. 0.67
   2 !    3.2   0.0    0.0094        84      45     129 ..     236     326 ..     229     368 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.3e-06
  Chalcone_3  13 vtvggkeLkLnGaGlRskff..fkvYvagLYlpeks.sdaeai 52 
                 ++ +g+e +L G+G+R+++f  ++vY +g Y++++  +  +  
  CCE29835.1 164 AQQTGTEYTLVGLGMRTVTFlgIQVYLVGFYVATQDvERLQHY 206
                 566799**********98883367********97541444444 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0094
  Chalcone_3  45 kssdaeailaaeekairleils.rdvsseklkkaleegfekntaee....laelkariekfkalfak.evkkgdvitldylpgkgvvvvvn 129
                  +++ ++il++ + +  ++++  rd +   l + + +++++ ++++     +++ a +++fkalf++ +v k  ++ l+   + ++ v+++
  CCE29835.1 236 GEQTWDSILREAGCRSAFRVVPvRDTDFHHLRDGFVRAIQARSGSDkacnDDAFGAAMKDFKALFNRgQVPKKKELLLSRDAQGKLDVMYG 326
                 5667778888887777777775588999999999****99966443111155688899999999985477777777776666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3266.27
//
Query:       CCE29836.1  [L=106]
Description: probable glutaredoxin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-21   76.5   0.0      2e-21   75.9   0.0    1.3  1  Glutaredoxin   Glutaredoxin
    0.00071   19.4   0.0     0.0052   16.6   0.0    1.9  2  DSBA           DSBA-like thioredoxin domain
     0.0012   19.2   0.1     0.0016   18.8   0.1    1.4  1  DUF836         Glutaredoxin-like domain (DUF836)
     0.0015   18.9   0.1      0.002   18.6   0.1    1.3  1  Thioredoxin_2  Thioredoxin-like domain
     0.0015   18.4   0.0     0.0016   18.3   0.0    1.1  1  TraF           F plasmid transfer operon protein
      0.002   18.5   0.0     0.0026   18.1   0.0    1.2  1  GST_N_3        Glutathione S-transferase, N-terminal domain
     0.0078   16.5   0.0       0.01   16.1   0.0    1.2  1  GST_N_2        Glutathione S-transferase, N-terminal domain
      0.009   16.2   0.5        1.8    8.7   0.2    2.1  2  Thioredoxin_4  Thioredoxin
  ------ inclusion threshold ------
      0.054   13.7   0.0      0.065   13.4   0.0    1.4  1  Thioredoxin_7  Thioredoxin-like
      0.092   12.7   0.1       0.11   12.5   0.1    1.2  1  Thioredoxin    Thioredoxin


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   1.1e-24     2e-21       1      60 []      17      79 ..      17      79 .. 0.99

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 1.1e-24
                  EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSH...HHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkde...eireelkelsgvrtvPqvfidgkhv 60
                  vvlf+k++CpyC+++kr+L+ l++k+e  ++dk++   ++++ l+e+sg+rtvP+v+i++kh+
    CCE29836.1 17 VVLFSKSYCPYCHATKRTLDALNAKYELMELDKMPdgsALQDSLEEISGQRTVPNVYIKQKHI 79
                  8*********************************9999************************8 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.9e-06    0.0052       2      31 ..      17      46 ..      16      79 .. 0.84
   2 ?    1.4   0.0      0.13   2.3e+02     168     191 ..      69      91 ..      57      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.9e-06
                EEEEEBTTBHHHHHHHHHHHHHHHHCCTEE CS
        DSBA  2 vdeffDvlCPyCylgkerleklaarspdvk 31
                v++f+  +CPyC++ k+ l++l a+++ ++
  CCE29836.1 17 VVLFSKSYCPYCHATKRTLDALNAKYELME 46
                899********************9993244 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.13
                 SSEEEETTCEEEESSSSHHHHHHH CS
        DSBA 168 vPtvvvdgkrmvfGadrldtlada 191
                 vP v++  k  + G+++++ l++a
  CCE29836.1  69 VPNVYIKQK-HIGGNSDIQDLQSA 91 
                 89****999.899*****999986 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   9.1e-07    0.0016       2      35 ..      17      48 ..      16      99 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 9.1e-07
                EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEE CS
      DUF836  2 ltLyskpgChlCeqakekLkelkleegleleviD 35
                ++L+sk +C+ C+  k  L   +l+ ++el + D
  CCE29836.1 17 VVLFSKSYCPYCHATKRTLD--ALNAKYELMELD 48
                79******************..777888888777 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.1e-06     0.002       6      31 ..      14      39 ..       9      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.1e-06
  Thioredoxin_2  6 kpvlvvftdpdCpyCkklkkelkeld 31
                      +v+f+++ CpyC++ k++l+ l+
     CCE29836.1 14 NSAVVLFSKSYCPYCHATKRTLDALN 39
                   5679****************999983 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   9.1e-07    0.0016     125     160 ..       9      44 ..       3      77 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 9.1e-07
        TraF 125 kklakeygLlfFyrgkcpyceaqapilqafadkygl 160
                 +++ k+ + ++F ++ cpyc+a   +l+a++ ky+l
  CCE29836.1   9 QAAIKNSAVVLFSKSYCPYCHATKRTLDALNAKYEL 44 
                 556688999*************************86 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.4e-06    0.0026       1      56 [.      19      78 ..      19      88 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.4e-06
                EES-TTSHHHHHHHHHHHHHT--EEEE---TTTT....HHHHHHH-TT--SSEEETTS-E CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevtpgeh....deellaknplgkvPvLeddgea 56
                L++  ++py+   + +L+ ++ ++e+ e+++        ++l +++++++vP  ++ ++ 
  CCE29836.1 19 LFSKSYCPYCHATKRTLDALNAKYELMELDKMPDgsalQDSLEEISGQRTVPNVYIKQKH 78
                89999*********************9997444222589*************88766555 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.6e-06      0.01       1      52 [.      24      75 ..      24      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.6e-06
                S-HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-C CS
     GST_N_2  1 aCPwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdk 52
                +CP++h +  +l  ++  +++ +++ +p+g    + + +++++ tVP   +k
  CCE29836.1 24 YCPYCHATKRTLDALNAKYELMELDKMPDGSALQDSLEEISGQRTVPNVYIK 75
                5******************************9999************88774 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2   0.00098       1.8      16      42 ..      16      42 ..      13      50 .. 0.90
   2 !    6.2   0.0     0.006        11     134     163 ..      62      91 ..      43      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00098
                   EEEEEE-TT-HHHHHHHHHHHHHHHHH CS
  Thioredoxin_4 16 tvieyedlrCphCakfeeeveklleey 42
                    v++++   Cp+C + ++++ +l ++y
     CCE29836.1 16 AVVLFSKSYCPYCHATKRTLDALNAKY 42
                   589***************999998887 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.006
                    HHHT--SS-EEEETTEEE-TT--HHHHHHH CS
  Thioredoxin_4 134 kkagiestPtfiingekveepqtyeelkal 163
                    + +g  ++P ++i+++ + +++++++l+++
     CCE29836.1  62 EISGQRTVPNVYIKQKHIGGNSDIQDLQSA 91 
                    5567789********************985 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.6e-05     0.065      20      40 ..      16      36 ..       3      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.6e-05
                   EEEEE--TT-HHHHHHHHHHH CS
  Thioredoxin_7 20 vlvffgaswcftCqalerdfl 40
                     v f++s+c++C+a +r++ 
     CCE29836.1 16 AVVLFSKSYCPYCHATKRTLD 36
                   5689************99875 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.2e-05      0.11      18      56 ..      13      50 ..       5     100 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.2e-05
                 SSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEE CS
  Thioredoxin 18 kklvlveFyApwCghCkalaPeleklaeelkdkvklakv 56
                 k+  +v F  ++C+ C a + +l++l  +++  + l k+
   CCE29836.1 13 KNSAVVLFSKSYCPYCHATKRTLDALNAKYE-LMELDKM 50
                 56899**********************9999.4555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 755.76
//
Query:       CCE29837.1  [L=293]
Description: uncharacterized protein CPUR_03685 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-18   65.6   1.2    7.9e-18   64.7   1.2    1.5  1  BAG          BAG domain
    3.7e-05   23.4   0.0    6.3e-05   22.6   0.0    1.3  1  ubiquitin    Ubiquitin family
     0.0083   16.7   0.3      0.016   15.8   0.3    1.4  1  DUF2407      DUF2407 ubiquitin-like domain
  ------ inclusion threshold ------
      0.015   15.3   0.0      0.029   14.4   0.0    1.5  1  Ubiquitin_4  Ubiquitin-like domain
       0.23   12.0   0.8       0.83   10.2   0.1    2.2  2  DinB_2       DinB superfamily


Domain annotation for each model (and alignments):
>> BAG  BAG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   1.2   2.2e-21   7.9e-18       4      74 ..     213     289 ..     210     290 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 2.2e-21
                 HHHHHHHH.HHHHHHHHHHH.......HHH..HHHHHHHHH.HHHHHTCEESTHHHHHHHHHHHHHHHHHHHHHHHH CS
         BAG   4 ilkevetllepeveafektv.....kkekeylylsElLlkl.LlkLDsieiegdeeaRekRKeavkevqkllkklDs 74 
                 + +e++ +l+p ++a+++++     k+++e+++l+E++l++ LlkLD++++eg +e+R++RK++v  vq++l++lD+
  CCE29837.1 213 LYNEFSLKLQPLCKAYIDAPprdakKRDDEHRKLTETVLQSiLLKLDEVDAEGIAEVRARRKALVAGVQDVLTRLDA 289
                 557888899***************999*************************************************8 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.8e-08   6.3e-05      35      69 ..     104     139 ..      87     141 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.8e-08
                 SGGGEEEEETTEEE.-TTSBHGGHTTSTTEEEEEEE CS
   ubiquitin  35 paeqqrLiysGkvL.edertleeygiqdgstlhlvl 69 
                 + +++rL+y+Gk+L + e  +++yg++++s l+ vl
  CCE29837.1 104 ASRRIRLLYKGKQLeNSEAAVRDYGVKNKSELMAVL 139
                 56799*********777889*************998 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   4.3e-06     0.016      32      72 ..      89     163 ..      83     190 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.3e-06
     DUF2407  32 liRerl.....paelasrrLrLIyaGrlLedttslasslklpees.............................v 72 
                  +R+r+      +e asrr+rL+y+G+ Le++++  ++  ++++s                             +
  CCE29837.1  89 DVRDRVgrmleLSERASRRIRLLYKGKQLENSEAAVRDYGVKNKSelmavladvrdnsntsgeeilivdddsapR 163
                 4666666666678999**************988877777776666678887777777777766666665544442 PP

>> Ubiquitin_4  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   8.2e-06     0.029      57      84 ..     109     136 ..      87     138 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.2e-06
  Ubiquitin_4  57 cLsfegekLkddkaklkeygirnksels 84 
                   L ++g++L++ +a++++yg++nksel+
   CCE29837.1 109 RLLYKGKQLENSEAAVRDYGVKNKSELM 136
                  699**********************996 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.36   1.3e+03      76      88 ..      88     100 ..      42     148 .. 0.61
   2 ?   10.2   0.1   0.00023      0.83      59      93 ..     257     291 ..     207     293 .] 0.76

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.36
      DinB_2  76 aevrarllallea 88 
                 ++vr+r+  +le 
  CCE29837.1  88 QDVRDRVGRMLEL 100
                 3444444333332 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00023
      DinB_2  59 gldpltppsaaealaylaevrarllallealtdad 93 
                 +ld++   ++ae++a++++++a ++++l++l++a 
  CCE29837.1 257 KLDEVDAEGIAEVRARRKALVAGVQDVLTRLDAAK 291
                 345555589**********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2228.73
//
Query:       CCE29838.1  [L=203]
Description: probable ribosomal protein l13a [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-12   47.1   0.0    2.2e-10   40.9   0.0    2.3  1  Ribosomal_L13  Ribosomal protein L13
  ------ inclusion threshold ------
      0.091   12.5   0.0       0.13   12.0   0.0    1.4  1  DSBA           DSBA-like thioredoxin domain


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   2.4e-14   2.2e-10       4     124 ..      10     120 ..       8     121 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 2.4e-14
                    EEEETTSBHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEE.E-SSTTSEEEEEHHHHHCCSHHHHHHHHHHCCS-S CS
  Ribosomal_L13   4 viDAegqvlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyr.htgypgglkevtakellekkpeeilekaVkgmLpk 98 
                    v+D +g+ lgrlas +ak L              G  vvv+ +e ++++g+  + k  y+ + + +   + ++   ++ + p++i+ kaV+gm+p+
     CCE29838.1  10 VVDGKGHLLGRLASIVAKQLL------------NGQKVVVVRCEALNISGEFFRAKLKYHaYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPH 93 
                    788888888888888888775............5788*************99988865540445555566667777*******************8 PP

                    SH.HHHHHGCTEEEESSSTTSGGGGSC CS
  Ribosomal_L13  99 nk.lgrrrlkrLkvyageehpheaqkp 124
                    ++  g + l+rLkv++g   p++ qk+
     CCE29838.1  94 KTaRGAAALERLKVFEGVPPPYDTQKK 120
                    772566677***********9999985 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.4e-05      0.13      49     158 ..      86     195 ..      40     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
                 S.GGGSHHHHHHHHHHHHHHHHHHT....GGSSHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHTSSS-TSSHHHHHHHHHHTTS.HHHHHHHHTSH CS
        DSBA  49 vgpselpeklkylledlkrlaeaegiplrfpkdklknstraarlllaagaeglaekvvrelfealwsegqaitddqellevaekaGldaeeldealese 147
                 + ++++p+k++  ++ l+rl+ +eg+p   +++k+    +a r+l +   + ++ +v r  +e  w+ +  + + +e +++  +a  +++++++   s+
  CCE29838.1  86 AVRGMIPHKTARGAAALERLKVFEGVPPPYDTQKKMVVPQALRVLRLQPGR-KYCTVGRLSHEVGWKYQDVVARLEERRKAKGAAYYERKKVAARQLSD 183
                 445669*********************999999855777888888777777.699******************************99999976665555 PP

                 HHHHH.HHHHHH CS
        DSBA 148 avkea.vrenta 158
                 a k+a v+ +t 
  CCE29838.1 184 AKKNAsVKAETT 195
                 555541433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1519.92
//
Query:       CCE29839.1  [L=202]
Description: related to translocation protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-08   34.6   0.4    0.00029   20.7   0.0    3.4  3  TPR_2     Tetratricopeptide repeat
    2.1e-05   24.7   0.6      0.054   13.8   0.0    3.1  3  TPR_12    Tetratricopeptide repeat
    0.00015   21.4   0.1       0.13   12.2   0.0    3.3  3  TPR_1     Tetratricopeptide repeat
    0.00016   22.2   0.7     0.0095   16.6   0.1    3.0  3  TPR_16    Tetratricopeptide repeat
    0.00028   20.9   0.0     0.0064   16.6   0.0    2.8  3  TPR_8     Tetratricopeptide repeat
     0.0016   18.9   0.1     0.0049   17.4   0.0    1.9  1  TPR_19    Tetratricopeptide repeat
     0.0049   17.6   2.3        0.2   12.6   0.1    3.2  3  TPR_14    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.015   15.5   0.1      0.035   14.2   0.1    1.7  1  TPR_9     Tetratricopeptide repeat
       0.13   12.7   0.0       0.27   11.7   0.0    1.5  1  DUF5121   Domain of unknown function (DUF5121)
       0.17   12.6   1.1        1.8    9.5   0.1    2.9  3  TPR_4     Tetratricopeptide repeat
       0.18   11.7   3.1        1.5    8.8   0.1    3.0  3  TPR_10    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.038        62       8      25 ..      75      92 ..      71      99 .. 0.84
   2 !    6.3   0.0    0.0074        12       3      21 ..     117     136 ..     115     142 .. 0.84
   3 !   20.7   0.0   1.8e-07   0.00029       1      30 [.     150     179 ..     150     182 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.038
       TPR_2  8 GlayyklgdyeeAleafe 25
                G+  y++g+++eA +++ 
  CCE29839.1 75 GNTEYRKGKHAEAGRLYS 92
                8999*********99886 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0074
       TPR_2   3 alynlGlayyklgdy.eeAl 21 
                 ++ n++++++ ++++ e A+
  CCE29839.1 117 LYANRAQVHMSQQNWpEGAI 136
                 689************66665 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 1.8e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 ++++++ G+++ ++g+++eA+e+ ++Ale 
  CCE29839.1 150 PKGWWRKGRCLVEMGRLAEAREWVKRALEV 179
                 579*************************95 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.2    0.0089        15       8      34 ..      73      99 ..      68     119 .. 0.77
   2 ?    1.9   0.0      0.18   2.9e+02       6      27 ..     118     139 ..     112     147 .. 0.74
   3 !   13.8   0.0   3.3e-05     0.054      10      73 ..     157     178 ..     151     185 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0089
      TPR_12  8 nlaavlrrlgrydeAlellekaleiar 34
                + +++++r g+++eA +l+   +++a 
  CCE29839.1 73 ENGNTEYRKGKHAEAGRLYSLGIQMAA 99
                56999*************987777665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.18
      TPR_12   6 lnnlaavlrrlgrydeAlelle 27 
                 + n+a+v++ ++++ e     +
  CCE29839.1 118 YANRAQVHMSQQNWPEGAIDAD 139
                 4489*********999765555 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 3.3e-05
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 +                                          r++ ++gr++eA+e+ ++al+
  CCE29839.1 157 G------------------------------------------RCLVEMGRLAEAREWVKRALE 178
                 4..........................................555555555555555555554 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.17   2.8e+02       8      25 ..      75      92 ..      72      98 .. 0.82
   2 ?    3.5   0.0     0.043        70       4      18 ..     118     132 ..     116     134 .. 0.89
   3 !   12.2   0.0   7.8e-05      0.13       6      30 ..     155     179 ..     150     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.17
                HHHHHHTT-HHHHHHHHH CS
       TPR_1  8 GnayfklgkydeAleyye 25
                Gn+ +++gk+ eA   y+
  CCE29839.1 75 GNTEYRKGKHAEAGRLYS 92
                89999*******976665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.043
                 HHHHHHHHHHTT-HH CS
       TPR_1   4 lynlGnayfklgkyd 18 
                 + n+++++++++++ 
  CCE29839.1 118 YANRAQVHMSQQNWP 132
                 89*********9986 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 7.8e-05
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALel 30 
                 ++G ++ ++g++ eA e  ++ALe+
  CCE29839.1 155 RKGRCLVEMGRLAEAREWVKRALEV 179
                 89*********************97 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.26   4.3e+02      41      66 ..      75     100 ..      73     102 .. 0.76
   2 ?    3.4   0.0     0.075   1.2e+02      37      67 ..     118     149 ..     107     150 .. 0.80
   3 !   16.6   0.1   5.8e-06    0.0095       3      62 ..     121     178 ..     119     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.26
      TPR_16  41 gdaalrqgrlaeAaalyraalraapd 66 
                 g+  +r+g +aeA  ly   ++ a++
  CCE29839.1  75 GNTEYRKGKHAEAGRLYSLGIQMAAQ 100
                 66789999999999888776666655 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.075
      TPR_16  37 llllgdaalrqgrlaeAa.alyraalraapda 67 
                 + ++++++  q++++e a ++ ++ ++  +++
  CCE29839.1 118 YANRAQVHMSQQNWPEGAiDADASVAAKQMGN 149
                 66899***********9988877776666655 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 5.8e-06
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraalr 62 
                 +a+ ++ ++++++ a  ++a +++       ++  ++ +g+++ + grlaeA++++++al+
  CCE29839.1 121 RAQVHMSQQNWPEGAIDADASVAAK---QMgNPKGWWRKGRCLVEMGRLAEAREWVKRALE 178
                 6777778888666666665555555...4448889***********************985 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.9   3.1e+03      12      29 ..      79      96 ..      75     100 .. 0.67
   2 ?    0.3   0.0      0.68   1.1e+03       3      15 ..     117     130 ..     115     138 .. 0.71
   3 !   16.6   0.0     4e-06    0.0064       2      30 ..     151     179 ..     150     182 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.9
                HHTT-HHHHHHHHHHHHH CS
       TPR_8 12 lklgdyeeAkeyyekale 29
                  +g++ eA   y   ++
  CCE29839.1 79 YRKGKHAEAGRLYSLGIQ 96
                568999998776665555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.68
                 HHHHHHHHH.HHTT CS
       TPR_8   3 ayynlgsiy.lklg 15 
                 +y n ++++ ++++
  CCE29839.1 117 LYANRAQVHmSQQN 130
                 799******55555 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 4e-06
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekalel 30 
                 + ++++g+++ ++g++ eA e+ ++ale 
  CCE29839.1 151 KGWWRKGRCLVEMGRLAEAREWVKRALEV 179
                 579************************97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     3e-06    0.0049      18      61 ..     143     187 ..     127     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3e-06
      TPR_19  18 lqedpknaearllLAeallalgqldeAealLdalpeedpdd.ary 61 
                  ++  +n+  + +  ++l+++g+l+eA++ +++++e +  +   +
  CCE29839.1 143 AAKQMGNPKGWWRKGRCLVEMGRLAEAREWVKRALEVEGEEvDLV 187
                 455557888899999********************9988864444 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.1   1.8e+03      11      29 ..      78      96 ..      75     111 .. 0.74
   2 ?    5.4   0.0     0.025        41       3      43 ..     117     158 ..     115     159 .. 0.84
   3 !   12.6   0.1   0.00012       0.2       2      39 ..     151     188 ..     150     193 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.1
      TPR_14 11 llalGdpdeAiallrrala 29
                +++ G+++eA +l+   ++
  CCE29839.1 78 EYRKGKHAEAGRLYSLGIQ 96
                6788999999999987766 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.025
      TPR_14   3 allalaeallalGd.pdeAiallrralalaPddaeawlllaq 43 
                 +++ +a++++ +++ p++Ai++   + a++ +++  w + ++
  CCE29839.1 117 LYANRAQVHMSQQNwPEGAIDADASVAAKQMGNPKGWWRKGR 158
                 56779*****99995799***999999999999988877776 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 0.00012
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawl 39 
                 + +++ ++ l + G+++eA++  +ral+   ++ ++  
  CCE29839.1 151 KGWWRKGRCLVEMGRLAEAREWVKRALEVEGEEVDLVA 188
                 67999999********************9887766554 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.2e-05     0.035       4      67 ..     124     188 ..     122     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-05
       TPR_9   4 iaireedweralavverllll.aPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaea 67 
                 +++++++w++    ++  ++  +   p  ++  G++l+++G+l++A++   ++l+++++  d  a
  CCE29839.1 124 VHMSQQNWPEGAIDADASVAAkQMGNPKGWWRKGRCLVEMGRLAEAREWVKRALEVEGEEVDLVA 188
                 78899999999999998888856789*****************************9998777655 PP

>> DUF5121  Domain of unknown function (DUF5121)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00017      0.27      79     113 ..      63      97 ..      56      98 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
     DUF5121  79 sttsdllkitdsgNlelaegvtleeGktyvltvdl 113
                 + +s+++k++++gN e ++g++ e G+ y l +++
  CCE29839.1  63 KRSSQVVKLGENGNTEYRKGKHAEAGRLYSLGIQM 97 
                 67899*************************99876 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.1   5.1e+03      15      23 ..      82      90 ..      79      91 .. 0.75
   2 ?   -0.4   0.0       1.6   2.6e+03       4      19 ..     118     133 ..     116     135 .. 0.81
   3 ?    9.5   0.1    0.0011       1.8       8      24 ..     157     173 ..     152     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.1
       TPR_4 15 GdldeAral 23
                G ++eA +l
  CCE29839.1 82 GKHAEAGRL 90
                778888776 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.6
       TPR_4   4 llaLArallalGdlde 19 
                 ++++A+++  + +++e
  CCE29839.1 118 YANRAQVHMSQQNWPE 133
                 6899**9998888877 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0011
       TPR_4   8 ArallalGdldeArall 24 
                 +r l + G+l+eAr+++
  CCE29839.1 157 GRCLVEMGRLAEAREWV 173
                 7889999********97 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.28   4.5e+02       9      25 ..      75      91 ..      75      98 .. 0.87
   2 ?    0.5   0.0      0.36   5.9e+02       5      31 ..     118     144 ..     115     147 .. 0.80
   3 ?    8.8   0.1   0.00091       1.5      14      31 ..     162     179 ..     157     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.28
      TPR_10  9 analrqrgrydeAeall 25
                +n+ ++ g+++eA +l+
  CCE29839.1 75 GNTEYRKGKHAEAGRLY 91
                788999*******7776 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.36
      TPR_10   5 lnNLanalrqrgrydeAealleealai 31 
                 + N a ++ +++++ e   +++ ++a+
  CCE29839.1 118 YANRAQVHMSQQNWPEGAIDADASVAA 144
                 77999********99977777777665 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00091
      TPR_10  14 qrgrydeAealleealai 31 
                 ++gr++eA+++ ++al++
  CCE29839.1 162 EMGRLAEAREWVKRALEV 179
                 79**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1435.26
//
Query:       CCE29840.1  [L=107]
Description: uncharacterized protein CPUR_03688 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 834.14
//
Query:       CCE29841.1  [L=114]
Description: uncharacterized protein CPUR_03689 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 950.86
//
Query:       CCE29842.1  [L=221]
Description: uncharacterized protein CPUR_03690 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0045   16.2   0.1      0.006   15.8   0.1    1.1  1  PIF1      PIF1-like helicase
  ------ inclusion threshold ------
       0.14   12.0   0.0       0.25   11.2   0.0    1.4  1  SH3_13    ATP-dependent RecD-like DNA helicase SH3 domain


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   6.6e-07     0.006     330     364 .]      33      67 ..      23      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.6e-07
                 -SCEEE-TT-EEEE-S--CTT-SC-TCEEEEEEEE CS
        PIF1 330 nhvLkLkvGvpvmllrNldqsaGLcNGtrlivtql 364
                 ++vL + +G+ vml  Nl  ++GL+NG+ ++v++l
  CCE29842.1  33 SQVLPICIGARVMLTANLWIEKGLVNGSVGTVEDL 67 
                 6899999***********************99876 PP

>> SH3_13  ATP-dependent RecD-like DNA helicase SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.8e-05      0.25      28      54 ..      40      67 ..      31      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.8e-05
      SH3_13 28 vgDkVmqlkNn.ydkgvfNGDiGiikei 54
                +g +Vm + N   +kg+ NG +G+++++
  CCE29842.1 40 IGARVMLTANLwIEKGLVNGSVGTVEDL 67
                789*******73689**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1882.67
//
Query:       CCE29843.1  [L=429]
Description: probable clathrin-associated adaptor complex medium chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-76  256.4   0.0    3.7e-76  256.0   0.0    1.1  1  Adap_comp_sub   Adaptor complexes medium subunit family
    2.6e-05   24.2   0.2      5e-05   23.3   0.2    1.4  1  Clat_adaptor_s  Clathrin adaptor complex small chain
  ------ inclusion threshold ------
       0.11   11.9   0.0        0.2   11.1   0.0    1.4  1  RIBIOP_C        40S ribosome biogenesis protein Tsr1 and BMS1


Domain annotation for each model (and alignments):
>> Adap_comp_sub  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.0   0.0   6.2e-80   3.7e-76       2     250 ..     158     423 ..     157     426 .. 0.96

  Alignments for each domain:
  == domain 1  score: 256.0 bits;  conditional E-value: 6.2e-80
                    XXXXXXXXXXX-EEEEEEEEEEEEEE-TTS-EEEEEEEEEEEEEE---TT-EEEEEE-SS-EE.....................--S.SEESEEEE CS
  Adap_comp_sub   2 swrrkgikykkneiyldviErvsvlvdkkGkilksevqGtiacksklsgmpelklgLndklnk.....................ekk.ielddvsf 75 
                    swr++ ++y+kne ++dviE v++l++ +G++l+++v+G+i ++++lsg+pe+k+gLnd+l +                         + l+d++f
     CCE29843.1 158 SWRKADVRYRKNEAFVDVIEDVNLLMSATGTVLRADVNGQIVMRAYLSGTPECKFGLNDRLLLdndglltlpsgnrmgtkatkaAAGsVSLEDCQF 253
                    8********************************************************************************9863337******** PP

                    ETT-B-TTHHHH-EEEE---SEEEEEEEEEES--SS--SEEEEEEEEE-TTTSEEEEEEEEEE-S-TT-EEEEEEEEEE--TT-EEEEEEESSTT- CS
  Adap_comp_sub  76 HqcVnldkfeservisFiPpdgeftLmrYrlsannvklPfsvkpkvklsgdevrveielklkenfkkkltlenvkisiplpkevsnlaiktskGka 171
                    HqcV+l kf+s+r+isF+Ppdgef+LmrYr  ++nv+lPf+v  +v++ g+ ++ve+++ +k+nf++kl ++nv+++ip p ++ ++ +++++Gka
     CCE29843.1 254 HQCVKLGKFDSDRIISFVPPDGEFELMRYRA-TENVNLPFKVHAIVNEIGR-SKVEYSIGVKANFGSKLFATNVVVRIPTPLNTAKIIERVTQGKA 347
                    *******************************.****************888.******************************************** PP

                    EEEEETTEEEEEE--EETT-EE..EEEEEEE--------------.EEEEEEEET--SS---EEEEEEE-------EEE CS
  Adap_comp_sub 172 kynpeenaleWtikklpggnesslsgeleleaesekkeenprdgklvsveFkipgftaSgikVeslkveeresykpfkw 250
                    ky+p+en ++W+++++ g++e+ ls+e  l++ +  ++  +++++ +s++F++ +ft Sg+ V++lkv e+++y+++kw
     CCE29843.1 348 KYEPSENCIVWKVGRFTGQSEYVLSAEALLTSMT--NQRAWSRPP-LSLNFSLLMFTSSGLLVRYLKVFEKSNYSSVKW 423
                    **********************999977777666..788998889.*******************************99 PP

>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.2   8.4e-09     5e-05       1     131 [.       1     128 [.       1     136 [. 0.90

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 8.4e-09
                     -EEEEEEE-TTS-EEEEEESSSS-CHHHHHHHH.HHHHHHHTT-SSS-SEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHH CS
  Clat_adaptor_s   1 mikaililnkkgkvrlakfytavddkkkqklie.evyelvsaRdsklsniveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdky 94 
                     mi  +li+n+kg+ ++ + + +   ++ +++++ +v+++   R    s i+ l  ++    +  ++Y v i +++ n  +++e + ++++    y
      CCE29843.1   1 MISGLLIFNQKGENLIFRAFRNDCRPRLADVFRiQVISNAQVR----SPILTLGSTTFSHVKHENIYLVAITKSNANAALVFEFLYRLIQLGKGY 91 
                     68889*************9988888888888874667777777....88999999999999********************************** PP

                     CTS-SHHHHHHCHHHHHHHHHCCEETTEES---HHHH CS
  Clat_adaptor_s  95 fgnVceldlvfnfekvylildEivsgGeiletskkev 131
                     fg+  e ++  nf  vy +ldEi++ G  ++t+++++
      CCE29843.1  92 FGKFDEEAVKNNFVLVYELLDEIIDFGYPQNTETDTL 128
                     ***************************9999887765 PP

>> RIBIOP_C  40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.3e-05       0.2     165     220 ..     149     208 ..     133     212 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.3e-05
    RIBIOP_C 165 cvatfygpitfpntpvlafkel.....sskeasfrlvatGsvlevdpsriivkrivLtGhp 220
                 +++++ g +++ ++ v + k++       ++ ++ ++atG+vl +d + +iv r+ L+G+p
  CCE29843.1 149 ITMQATGALSWRKADVRYRKNEafvdvI-EDVNLLMSATGTVLRADVNGQIVMRAYLSGTP 208
                 3444444455555555554444777752.3688999***********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3551.04
//
Query:       CCE29844.1  [L=511]
Description: probable cellulose 1,4-beta-cellobiosidase II precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.2e-106  356.9   0.5   1.6e-106  356.5   0.5    1.1  1  Glyco_hydro_6  Glycosyl hydrolases family 6
  ------ inclusion threshold ------
      0.073   12.8   0.0       0.14   11.9   0.0    1.4  1  HD_4           HD domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_6  Glycosyl hydrolases family 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.5   0.5  1.8e-110  1.6e-106      13     305 ..     180     475 ..     167     476 .. 0.96

  Alignments for each domain:
  == domain 1  score: 356.5 bits;  conditional E-value: 1.8e-110
  Glyco_hydro_6  13 ldaalaakaakvakvptavWldriakieelrkaldeavaqakaeg.avvvlVvYnlPgRDCaaqaSaGelasaaa.lekYkeyidaiaagigkysd 106
                    l+ a+a++a+kvak+p + W+d+ +k++ ++k l++++a+++++g ++ ++VvY+lP+RDCaa aS+Ge++ +++ ++kYk+yid+i++++ +ysd
     CCE29844.1 180 LAGAMATAAEKVAKTPAFYWMDSLSKTPVMKKMLADIRAANRKGGnYAGQFVVYDLPDRDCAAAASSGEFTIRNNgVAKYKNYIDTIRKIVLAYSD 275
                    455899***********************************99998999*********************************************** PP

  Glyco_hydro_6 107 lravvvlEpDslanlvtnlsvekCaeaaaaaerlaglayAvkkLkalpnvavYlDaghsgwlgWeknleeaaellakvvkaaagvakvdGfalnvs 202
                    +r+++++EpDsl n+vtnl+ +kC++a++a  +l+g++yA+++L+  pnva+YlDagh+gwlgW++n ++aa+l+akv+k+a+++++++G+++nv+
     CCE29844.1 276 VRIMLIIEPDSLSNMVTNLNIAKCSKAKSA--YLEGVNYALRQLNL-PNVAMYLDAGHAGWLGWPANQDSAAQLFAKVYKDAGSPSSLRGLVTNVA 368
                    ******************************..*************9.************************************************* PP

  Glyco_hydro_6 203 nynateea.....teanksvdekkYakalskalvaaglpalahfviDtsRnGkqgkerkdageWCNppgrglGerpttstgdplvdaylWvKppGe 293
                    nyn +++a     t+ n+ +dek+Y++als+ l+ +g+++ a+f+ D++R+G+q++ ++++++WCN++g+g+G rp+++tgd+l+da++WvKp+Ge
     CCE29844.1 369 NYNGWDTAtppryTKGNAIYDEKHYIHALSPLLERHGWAG-ARFITDQGRAGRQPTGQTSWSHWCNAKGTGFGLRPSANTGDALLDAFVWVKPGGE 463
                    ******889***99************************88.7****************************************************** PP

  Glyco_hydro_6 294 SDGtcdrsaaea 305
                    SDGt+++s+ ++
     CCE29844.1 464 SDGTSKASSRRY 475
                    *****9998876 PP

>> HD_4  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.5e-05      0.14      85     126 ..     252     292 ..     238     310 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.5e-05
        HD_4  85 aadeaeekaeqvenlRkmLlAmveDirvvliklAdrlqtlrs 126
                 +++  ++ +++++++Rk+ lA++ D+r++li   d l ++ +
  CCE29844.1 252 RNNGVAKYKNYIDTIRKIVLAYS-DVRIMLIIEPDSLSNMVT 292
                 5667788899************5.*******99999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3785.82
//
Query:       CCE29845.1  [L=1004]
Description: related to MSP1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-38  130.6   0.0    1.5e-37  128.9   0.0    2.0  1  AAA           ATPase family associated with various cellular 
    3.6e-10   39.5   0.0    8.2e-10   38.3   0.0    1.7  1  AAA_lid_3     AAA+ lid domain
    4.8e-06   26.4   0.0    1.3e-05   25.0   0.0    1.7  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
    1.5e-05   25.5   0.1     0.0011   19.4   0.0    2.8  2  AAA_16        AAA ATPase domain
    0.00019   21.6   0.1     0.0047   17.1   0.0    2.7  2  AAA_33        AAA domain
    0.00026   21.1   0.0    0.00092   19.3   0.0    1.9  1  AAA_14        AAA domain
    0.00043   20.6   4.7      0.045   14.0   0.1    3.8  4  AAA_22        AAA domain
     0.0017   18.0   0.0       0.65    9.6   0.0    2.6  2  AAA_25        AAA domain
     0.0021   18.0   0.1     0.0071   16.3   0.1    2.0  1  AAA_5         AAA domain (dynein-related subfamily)
     0.0041   16.6   0.0      0.073   12.5   0.0    2.3  2  TniB          Bacterial TniB protein
     0.0072   16.1   0.0      0.019   14.7   0.0    1.7  1  IstB_IS21     IstB-like ATP binding protein
      0.008   15.9   0.0      0.018   14.7   0.0    1.6  1  AAA_24        AAA domain
     0.0093   15.4   0.1      0.024   14.0   0.1    1.6  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.011   16.3   0.0      0.051   14.1   0.0    2.2  1  AAA_18        AAA domain
      0.014   15.5   0.0       0.18   11.9   0.0    2.5  2  AAA_2         AAA domain (Cdc48 subfamily)
      0.021   14.1   0.1        2.1    7.6   0.0    2.7  2  Zeta_toxin    Zeta toxin
      0.021   14.0   0.0      0.044   13.0   0.0    1.5  1  TIP49         TIP49 P-loop domain
      0.053   13.4   0.2          7    6.5   0.0    3.1  3  ATPase_2      ATPase domain predominantly from Archaea
      0.071   13.5   0.0       0.18   12.2   0.0    1.7  1  RNA_helicase  RNA helicase
      0.075   13.0   0.1        0.4   10.6   0.1    2.2  2  NACHT         NACHT domain
       0.09   12.8   0.0       0.19   11.7   0.0    1.5  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.11   11.6   0.0       0.27   10.4   0.0    1.6  1  DUF815        Protein of unknown function (DUF815)
       0.11   12.7   0.0       0.38   11.0   0.0    1.9  1  AAA_28        AAA domain
       0.16   12.4   0.1          1    9.8   0.0    2.4  2  AAA_17        AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   0.0   2.1e-40   1.5e-37       2     131 ..     734     860 ..     733     861 .. 0.95

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 2.1e-40
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkkk 99 
                 llyGppGtGKT+lakavake+g+++le+sg++l +kyvgesek ir++f+ ak+ + p+++fiDE+d+l  +r   s+++++++ +nq+l+e+dg+++ 
  CCE29845.1 734 LLYGPPGTGKTMLAKAVAKESGANMLEVSGATLNDKYVGESEKLIRAIFTLAKRLE-PCVVFIDEADSLLANRgMYSNRNSHREHINQFLKEWDGLEET 831
                 9******************************************************8.****************87778889999**************6 PP

                 SSTEEEEEEESSGGGSTHHHHSTTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallrgRfdrkieie 131
                   + ++++atnrp +ld+a+l +R+ rki ++
  CCE29845.1 832 --NAFIMVATNRPFDLDDAVL-RRLPRKILVD 860
                 ..57999**************.7*****9876 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.1e-12   8.2e-10       2      36 ..     884     918 ..     883     943 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 1.1e-12
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgik 36 
                 vd+++LA rT+ ySG Dl++lc +Aa++A+++ + 
  CCE29845.1 884 VDIEKLAHRTPYYSGSDLKNLCVAAAMAAVEEENN 918
                 9*****************************99764 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.7e-08   1.3e-05      35      95 ..     732     800 ..     724     808 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.7e-08
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvleka.....gd.laalltnleekd..vlfideihr 95 
                  +llyGpPG Gkt lak +ake g+++   sg +l+ +        + a++t  ++ +  v+fide   
  CCE29845.1 732 GCLLYGPPGTGKTMLAKAVAKESGANMLEVSGATLNDKyvgesEKlIRAIFTLAKRLEpcVVFIDEADS 800
                 579*****************************9997532211133144555444433333888888765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.5e-06    0.0011      18      51 ..     724     757 ..     719     773 .. 0.81
   2 ?    2.6   0.0      0.22   1.6e+02     122     146 ..     776     800 ..     773     807 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.5e-06
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekd 51 
                  ++++r + +ll+G++G+GK+ l+++++++  ++
  CCE29845.1 724 VLSQDRIPGCLLYGPPGTGKTMLAKAVAKESGAN 757
                 56677789*******************9976655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.22
      AAA_16 122 llkrll.allsrderplvlvlDdlqw 146
                 +l r++  l++r  +p v+++D+++ 
  CCE29845.1 776 KLIRAIfTLAKR-LEPCVVFIDEADS 800
                 566777588888.666*******995 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.41   3.1e+02      54     123 ..     464     533 ..     395     554 .. 0.84
   2 !   17.1   0.0   6.3e-06    0.0047       3      43 ..     734     776 ..     733     856 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.41
      AAA_33  54 rlyqilnelarkalsagrnvildatnlsrrerarflklarrlgvpvrivvvetdeetlkeRlakRaangd 123
                  l ++l+ ++++a ++g+++ +  t  s+++ +++ k++++l     +v+    ++   +R  +R+ +++
  CCE29845.1 464 LLLGRLRTMVDSAWKEGIQIAILGTSSSKDTSRKYNKAVEELAISNWVVTEYIEPDDVDQRAVARKLQST 533
                 57789999999*******************************9999999999999999999999998753 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 6.3e-06
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqq 43 
                 ll G+pG+GK+ la+ ++k+ g  +  +s  tl ++++g+ ++
  CCE29845.1 734 LLYGPPGTGKTMLAKAVAKESGanMLEVSGATLNDKYVGESEK 776
                 678*******************555556666655555554333 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.2e-06   0.00092       6      76 ..     734     801 ..     731     843 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.2e-06
      AAA_14   6 vitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 ++ G+  +GKT+l+k ++ke+     ++l+++  + +dk   ++ekl+++i+ ++k+ +  ++f+DE+  +
  CCE29845.1 734 LLYGPPGTGKTMLAKAVAKESG---ANMLEVSGATLNDKYVGESEKLIRAIFTLAKRLEPCVVFIDEADSL 801
                 689999**************99...*************99999999*******977788999*****9876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2         2   1.5e+03      49     104 ..     129     186 ..     111     209 .. 0.64
   2 ?   -2.5   0.0       7.7   5.8e+03      38      88 ..     384     431 ..     370     453 .. 0.72
   3 !   14.0   0.1     6e-05     0.045       9      28 ..     734     753 ..     731     761 .. 0.89
   4 ?    5.5   0.0     0.027        20      73     105 ..     772     809 ..     756     841 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2
      AAA_22  49 sstsskdllrellralglelka.erlsseellealeqalrarav.ielliiDEaqhlr 104
                 + ++s+ l+ + lr + + + a    +s+el ++l   +++  + i+l  iD ++++ 
  CCE29845.1 129 HAKTSRLLMDQALRSYFDACLAlLLERSSELTSQLLGSSNNEEKnIQLSRIDQIERIC 186
                 5557777777777777777777766667777777666666666667777777776653 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.7
      AAA_22  38 erpevvfvtlpsstsskdllrellralglelkaerlsseell.ealeqalra 88 
                 e+ +v+++ l+ss  +++++r++ +  +++  +   ++e++  + + q++ +
  CCE29845.1 384 ENGGVLSISLSSSP-WQNVMRKFEKSSKRDSAE---RRERIKvDNVLQHILR 431
                 46677777887777.888888888888877766...4444444666666554 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 6e-05
      AAA_22   9 vvtGesGtGKTtllrrlleq 28 
                 +++G++GtGKT+l++ ++++
  CCE29845.1 734 LLYGPPGTGKTMLAKAVAKE 753
                 79*************99886 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.027
      AAA_22  73 lsseellealeqalraravielliiDEaqhlr......s 105
                 ++se l++a+   +++     ++ iDEa+ l       s
  CCE29845.1 772 GESEKLIRAIFTLAKRLEP-CVVFIDEADSLLanrgmyS 809
                 5678888888888888888.**********754544431 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00086      0.65      36      52 ..     733     749 ..     724     753 .. 0.88
   2 ?    5.4   0.0     0.016        12     130     185 ..     778     837 ..     762     839 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00086
      AAA_25  36 allaGapgtGKttlald 52 
                 +ll+G+pgtGKt+la  
  CCE29845.1 733 CLLYGPPGTGKTMLAKA 749
                 69************965 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.016
      AAA_25 130 vdaleaaieevegvrlvviDplsralgg.....densnsdv.galvealeriarrtgaavll 185
                 ++a+   +++  ++ +v iD  +++l++     + ns+++  +++++ ++ + ++t+a +++
  CCE29845.1 778 IRAIFTLAKRL-EPCVVFIDEADSLLANrgmysNRNSHREHiNQFLKEWDGL-EETNAFIMV 837
                 56666667774.599*********988887966666666645**********.899998876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   9.6e-06    0.0071       2      32 ..     733     763 ..     732     853 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.6e-06
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvql 32 
                  lL GppGtgK++la+ +a+  ++++++v +
  CCE29845.1 733 CLLYGPPGTGKTMLAKAVAKESGANMLEVSG 763
                 59*****************999888888765 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   9.7e-05     0.073      31      59 ..     726     754 ..     720     762 .. 0.87
   2 ?    1.0   0.0      0.31   2.3e+02     104     135 ..     774     805 ..     763     824 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.7e-05
        TniB  31 krkrmpnlllvGdsnnGKtmivekFarlh 59 
                 +++r+p +ll+G++ +GKtm+++  a++ 
  CCE29845.1 726 SQDRIPGCLLYGPPGTGKTMLAKAVAKES 754
                 689*******************9888765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.31
        TniB 104 vskleqqvlrllrelkvrvLiiDEihnllags 135
                  +kl +++ +l ++l++ v+ iDE ++lla +
  CCE29845.1 774 SEKLIRAIFTLAKRLEPCVVFIDEADSLLANR 805
                 5677778889999***************9743 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.5e-05     0.019      49      79 ..     732     762 ..     727     800 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.5e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvl 79 
                 +++l Gp+G+GK+ la a+++e  ++ l+v+
  CCE29845.1 732 GCLLYGPPGTGKTMLAKAVAKESGANMLEVS 762
                 689*****************99877777766 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.5e-05     0.018       5      95 ..     733     818 ..     731     835 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.5e-05
      AAA_24   5 iliyGpsgiGKTtlakel....gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDtideleelclaevirqnekaesk 95 
                 +l+yGp+g+GKT+lak      g + l +   +  + l+++ +      e+++ ++ +la+ l+++ +++iD +d l      +  r++++ e++
  CCE29845.1 733 CLLYGPPGTGKTMLAKAVakesGANMLEV--SG--ATLNDKYVG---ESEKLIRAIFTLAKRLEPC-VVFIDEADSLLANRGMYSNRNSHR-EHI 818
                 69**************9955333333322..22..334443333...4567777777777777766.777888888766666565555555.565 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   3.2e-05     0.024      26      43 ..     734     751 ..     732     768 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.2e-05
  Mg_chelatase  26 llvGppGsGKtmlakrlp 43 
                   ll+GppG+GKtmlak+++
    CCE29845.1 734 LLYGPPGTGKTMLAKAVA 751
                   89************9875 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.8e-05     0.051       2      25 ..     734     763 ..     734     840 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.8e-05
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf.....g 25 
                 ll G+pG+GKt lak+++k+  ++     g
  CCE29845.1 734 LLYGPPGTGKTMLAKAVAKESgANmlevsG 763
                 589**************9996333455552 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.92   6.9e+02       6      45 ..     299     338 ..     296     349 .. 0.87
   2 ?   11.9   0.0   0.00024      0.18       6      98 ..     733     821 ..     728     824 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.92
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG--- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle 45 
                 i +l  +g G + +a++l ++l   ++  lir+da++l +
  CCE29845.1 299 ITILSMSGYGGKAIAESLGRHLAYWNQADLIRLDAQDLST 338
                 667888999999**********999**********99876 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00024
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG----..---------HHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk..essgadvSregVqrd 98 
                  ll gp g+Gkt+laka+a+   +       +++ s  + +++     ++li a     ++ e  +v++DE d   ++    s+++  re + + 
  CCE29845.1 733 CLLYGPPGTGKTMLAKAVAKESGA------NMLEVSGATLNDKYVGESEKLIRAIFTLAKRLEPCVVFIDEADSLLANrgMYSNRNSHREHINQF 821
                 5789****************9984......44455555554555566677777788888888999*******99877766677777777777665 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.052        39      88     174 ..     473     560 ..     468     610 .. 0.66
   2 ?    7.6   0.0    0.0029       2.1      20      51 ..     734     763 ..     725     769 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.052
  Zeta_toxin  88 lqeaiengyniivegtlrspdvvkklaealkkaGYevevvvvavkkelSrlgvldRyeeevaeg.Rlvpkeehdeafeglresveale 174
                 ++ a ++g+ i + gt +s d+ +k  +a+++   ++ vv  + ++    +++ +R +++ +++  + + +++ e  +++ + ++al 
  CCE29845.1 473 VDSAWKEGIQIAILGTSSSKDTSRKYNKAVEELAISNWVVTEYIEPDDVDQRAVARKLQSTENAvSFQSADHFAENIRNINRMARALS 560
                 5667777777777777777777777777777777777777777777777777777777774443356666666666666665555554 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0029
  Zeta_toxin  20 llgGqpGAGKselaellkdelerqgnvvrldp 51 
                 ll G pG GK+ la+++++e   + n++++++
  CCE29845.1 734 LLYGPPGTGKTMLAKAVAKES--GANMLEVSG 763
                 78899***************8..899998876 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.9e-05     0.044      49     102 ..     731     780 ..     717     801 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  49 aGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqa 102
                    + Ll Gp+gtGkt la a++ke g+++    +sg+ +    v  +e l++a
  CCE29845.1 731 P--GCLLYGPPGTGKTMLAKAVAKESGANM--LEVSGATLNDKYVGESEKLIRA 780
                 4..5799******************99654..5667777666666666666655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.26   1.9e+02     119     181 ..     442     504 ..     367     522 .. 0.66
   2 ?    6.5   0.0    0.0093         7      23      44 ..     733     754 ..     723     762 .. 0.84
   3 ?    0.6   0.0      0.59   4.4e+02     144     186 ..     776     814 ..     760     831 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.26
    ATPase_2 119 k...iiiiiDelqklidlglngaellvkeLlnliesltkekhlcvviclsSeglfiervynesele 181
                 +   ii+ + ++ +l  ++++   ll+  L ++++s  ke  + ++i+++S +    r yn++ +e
  CCE29845.1 442 RknpIILHLHDIVELN-MTVE-GSLLLGRLRTMVDSAWKEG-IQIAILGTSSSKDTSRKYNKAVEE 504
                 1344666677777777.5555.7777888888888866665.555566777776666678888665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0093
    ATPase_2  23 yfiYGpegsGKtaLlkeiienl 44 
                  ++YGp g GKt L k +++++
  CCE29845.1 733 CLLYGPPGTGKTMLAKAVAKES 754
                 579*************998876 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.59
    ATPase_2 144 eLlnliesltkekhlcvviclsSeglfiervyneselegrhky 186
                 +L+++i  l k+ + cvv++   ++l+ +    +++  +r ++
  CCE29845.1 776 KLIRAIFTLAKRLEPCVVFIDEADSLLAN----RGMYSNRNSH 814
                 57777778888899999999999999988....5555555554 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00024      0.18       2      26 ..     734     758 ..     733     778 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00024
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                   +lyGp+g+GK++lak +ak+   ++
    CCE29845.1 734 LLYGPPGTGKTMLAKAVAKESGANM 758
                   79**************999877655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00054       0.4       3      23 ..     733     753 ..     732     761 .. 0.87
   2 ?   -2.5   0.0       5.5   4.1e+03      73     114 ..     781     823 ..     768     849 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00054
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 ++l G++G GKT+L++ +a +
  CCE29845.1 733 CLLYGPPGTGKTMLAKAVAKE 753
                 5899************99976 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.5
                 HHHHCCSCCCEEEEEE-STT-SS-TCH..........HHHHHC CS
       NACHT  73 wavllelperlLlilDglDelvtdlgq.kekqpvrtlLselir 114
                 +  l+++ e  +  +D +D l +  g  +++++ r+ +++ ++
  CCE29845.1 781 IFTLAKRLEPCVVFIDEADSLLANRGMySNRNSHREHINQFLK 823
                 4456666677778899999999877778444444444444443 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00026      0.19      22      52 ..     733     765 ..     704     780 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00026
                 EEEEESTTSSHHHHHHHHHHHTT--..----TT CS
        TsaE  22 ilLeGdLGaGKTtlvrglakalgve..evkSPT 52 
                  lL+G+ G+GKT+l++++ak+ g +  ev+  T
  CCE29845.1 733 CLLYGPPGTGKTMLAKAVAKESGANmlEVSGAT 765
                 79********************99866666554 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00036      0.27      56     114 ..     733     796 ..     719     800 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
      DUF815  56 vLLwGarGtGKSslvkallneyaeegLrl..ievekedlkelpklvellr...erperfilfvD 114
                  LL+G  GtGK  l ka+ +e  ++ L +    ++ + + e +kl++++    +r e +++f+D
  CCE29845.1 733 CLLYGPPGTGKTMLAKAVAKESGANMLEVsgATLNDKYVGESEKLIRAIFtlaKRLEPCVVFID 796
                 69*******************9999987733456667777777887776511145555788888 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00051      0.38       4      36 ..     735     767 ..     733     789 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00051
      AAA_28   4 itGgestGKTtlleaLaargypvvpEaareile 36 
                 + G+++tGKT l++a a++    + E+    l+
  CCE29845.1 735 LYGPPGTGKTMLAKAVAKESGANMLEVSGATLN 767
                 89***************8844444455555555 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         5   3.8e+03      62      93 ..     622     652 ..     613     660 .. 0.64
   2 ?    9.8   0.0    0.0014         1       1      26 [.     736     761 ..     736     787 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 5
                 HHHHHHHHHSSEEEEEE-SEEEETTEEEESSH CS
      AAA_17  62 aekiaeeakkkgvlvdghprikeqagfldglp 93 
                  ++i  e++++g lv + +r  + +++l++  
  CCE29845.1 622 DANILSECCSMGSLVQKRARR-TVDEELEDSL 652
                 566777777777777777774.5555554443 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0014
                 EE-TTSSHHHHHHHHHHHHTEEEEEH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa 26 
                 +G+PG GK+ +++ ++++ g  +l+ 
  CCE29845.1 736 YGPPGTGKTMLAKAVAKESGANMLEV 761
                 7*****************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1004 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.41
# Mc/sec: 7403.06
//
Query:       CCE29846.1  [L=647]
Description: related to RNA polymerase II transcription factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-29   99.8   4.9    8.4e-14   51.3   0.1    3.1  3  BSD       BSD domain
    6.5e-27   93.7   0.1    1.9e-26   92.2   0.1    1.9  1  PH_TFIIH  TFIIH p62 subunit, N-terminal domain


Domain annotation for each model (and alignments):
>> BSD  BSD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.1   9.4e-18   8.4e-14       1      58 []     155     217 ..     155     217 .. 0.98
   2 !   49.6   0.1   3.2e-17   2.8e-13       2      58 .]     234     289 ..     233     289 .. 0.96
   3 ?   -2.6   0.2      0.65   5.9e+03      40      46 ..     537     543 ..     536     544 .. 0.81

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 9.4e-18
         BSD   1 wdnkfkldkteeiaqsllkedpeLrklynel.......VPskvseeqFWsrYfyllrahaieeeq 58 
                 +dn++k   ++e++qsl+k+d +L+++y e+       ++   ++ qFWs++ +llrahaie +q
  CCE29846.1 155 DDNQLK--NDIELQQSLMKKDRSLHQTYVEAistkpdsISGPAFNTQFWSTRTNLLRAHAIEINQ 217
                 79****..******************************************************987 PP

  == domain 2  score: 49.6 bits;  conditional E-value: 3.2e-17
         BSD   2 dnkfkldkteeiaqsllkedpeLrklynelVPskvseeqFWsrYfyllrahaieeeq 58 
                 d ++kl++  e+ q+++ ++p ++++yne+VP+ +se++FWsr+f +++++++++e+
  CCE29846.1 234 DGELKLNISVEQVQMMFVQHPLIKRIYNENVPK-LSEAEFWSRFFLSRLSKKLRGER 289
                 7899*****************************.******************99885 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.65
         BSD  40 qFWsrYf 46 
                 qFW+ + 
  CCE29846.1 537 QFWTAFL 543
                 9**9885 PP

>> PH_TFIIH  TFIIH p62 subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.1   2.1e-30   1.9e-26       2      87 .]      10      96 ..       9      96 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 2.1e-30
    PH_TFIIH  2 ykKkdGtLtlte..krleWtpdasssapsvsiplseIknlqispagsaKvmLklvlkedks.eeesytFtFtngsearkerdavkdlLq 87
                +kKkdG+Ltl +  ++++Wtp+++ ++p+vs+p+++I+nlq++p++saKvmLk+++k++++ e+ +y+F+F++  +a++e++avkd+L+
  CCE29846.1 10 FKKKDGILTLASdlQTVTWTPNSG-GPPTVSLPVENITNLQQTPETSAKVMLKVFEKSENAsEPATYLFHFNT-PDAKEEAKAVKDVLS 96
                8*******************9765.99******************************99888***********.68**********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 4849.07
//
Query:       CCE29847.1  [L=1038]
Description: probable oxoglutarate dehydrogenase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-62  209.1   0.0      6e-62  208.5   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
    1.5e-57  194.8   0.0    2.3e-57  194.2   0.0    1.2  1  E1_dh            Dehydrogenase E1 component
    1.1e-54  184.3   0.0    1.7e-54  183.6   0.0    1.4  1  OxoGdeHyase_C    2-oxoglutarate dehydrogenase C-terminal
    8.3e-20   70.1   0.9    1.7e-19   69.1   0.9    1.6  1  2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.5   0.0   1.3e-65     6e-62       2     178 .]     659     871 ..     658     871 .. 0.99

  Alignments for each domain:
  == domain 1  score: 208.5 bits;  conditional E-value: 1.3e-65
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT................TEGEEE--S-HHHHHHHHHHHHHHCT.TEEEEEEEE CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg................egrvidsgisEqavlgfavGaalagp.llviveaqF 81 
                    i++ +aea+a+++l++e+ +v+++g+Dv++gtfs+r+++ hdq+                ++ + +s++sE+++lgf++G++l++p +lv++eaqF
    CCE29847.1 659 NIDFPTAEALAFGTLVTEGYHVRVSGQDVERGTFSQRHAVFHDQEnekthtplqhiskdqgKFVISNSSLSEFGALGFEYGYSLQSPnALVMWEAQF 755
                   68999******************************************************************************************** PP

                   HHHHGGGHHGGHHHHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTT...................EEEE--SSHHHHHHHHHHHHH CS
  Transket_pyr  82 gdFangAqiyadqairsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipg...................lkvvrPsdpaetkhllrrair 159
                   gdFan+Aq+++dq+i sge k+++++g+v+ lp+g++++Gpeh+s +le++l+l ++                   +++++ ++pa+++h+lrr+++
    CCE29847.1 756 GDFANNAQCIIDQFIASGEVKWMQRTGLVMSLPHGYDGQGPEHSSGRLERYLQLSNEdprifptaeklvrqhqdcnMQIAYMTTPANLFHVLRRQMH 852
                   ************************************************************************************************* PP

                   SSS.SEEEEEE-SSEEC.T CS
  Transket_pyr 160 redrkPvvlrlpksllrhk 178
                   r++rkP++++++ksllrh+
    CCE29847.1 853 RQFRKPLIIFFSKSLLRHP 871
                   *****************85 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.2   0.0   5.2e-61   2.3e-57       6     295 ..     270     586 ..     265     590 .. 0.90

  Alignments for each domain:
  == domain 1  score: 194.2 bits;  conditional E-value: 5.2e-61
                 HHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TT..SEEEES.S--HHHHHHTT--..HHHHHHHHTT-T....TTSSGTT-..-E..BT.. CS
       E1_dh   6 lrrvedaldalykrkkrigfyhlsagqealkvgiaaaleke..Dliite.YReagvllargls..leeilaeltgkv....kgkggsrh.elmyaek.. 92 
                 +  +e++l+ +y + kr+g++ ++ + + +k +i+ +++ +  D++i + +R++ ++l ++++   e+i++e++g      +g+g++++  +m  e+  
  CCE29847.1 270 SSSFESFLATKYPNDKRFGLEGCETLVPGMKALIDRSVDYGvkDIVIGMpHRGRLNVLSNVVRkpNESIFSEFAGTLgaedEGSGDVKYhLGMNFERpt 368
                 56789999*******************************9888****999************98899*********9999*999999998777655412 PP

                 ....T..BEEE-SSTTTH..HHHHHHHHHHHH......HHTS---EEEEEEGGG.TT-HHHHHHHHHHHHTT--E...EEEEEEESEETTEEHHHH-S- CS
       E1_dh  93 ....esrilggngivgaq..vplvaGialaak......iegkkevailliGDgA.anqGdvyealnlaalwklpv...ifvveNNkygisTeaekasas 175
                      +++    ++++++   p+v G ++a +          +++ +ll+GD+A a+qG+vye l + +l+   +   i+ v+NN++g++T+++ a+++
  CCE29847.1 369 psgkRVQLSLVANPSHLEaeDPVVLGKTRAIQhfnndeATHRTAMGVLLHGDAAlAAQGIVYECLGFHSLPAFSTggtIHLVVNNQIGFTTDPRFARST 467
                 22113344444444444433777778888888999999888999*****************************99999********************* PP

                 --GGG..TTTTS-EEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHH CS
       E1_dh 176 keladrargvgipglrVdgnDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelk 274
                  + +d a++  +p ++V+++D++av  +++ Aa+++ e++ +++i+l++YR +gH+e D ps+++ + +++++++k+++i  + ++L ++g  ++e  +
  CCE29847.1 468 AYCTDIAKAIDAPVFHVNADDVEAVNFVCQLAADWRAEFQHDVVIDLICYRKYGHNETDQPSFTQ-PLMYKKIQQKEPQIDVYVNKLLEEGTFTKEDID 565
                 *****************************************************************.********************************* PP

                 HHHHHHHHHHHHHHHHHHHS- CS
       E1_dh 275 eiekevrkeveeavkkaeskk 295
                 e ++ v  + ee ++k++++ 
  CCE29847.1 566 EHKQWVWGMLEESFDKSKDYT 586
                 *****************9984 PP

>> OxoGdeHyase_C  2-oxoglutarate dehydrogenase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.6   0.0   3.9e-58   1.7e-54       1     152 []     874    1028 ..     874    1028 .. 0.95

  Alignments for each domain:
  == domain 1  score: 183.6 bits;  conditional E-value: 3.9e-58
  OxoGdeHyase_C    1 rSsleela.egtsFqrvledeeeea..lkepekvkrvvlcsGkvyydLlkerekkekekdvaivriEqlyPfpfeelkeelekYpnakelvWvQ 91  
                     rS++e++a +++ Fq++++d+e++a  +k+pe+++rv+lc+G+v+  L+k r++++ +++va++riEql Pfp+++lke+l+ Ypnak++vW+Q
     CCE29847.1  874 RSNIEDFAgPDAGFQWIIPDPEHQAgtIKSPEQIDRVILCTGQVWATLHKYRADNK-IDNVAFTRIEQLNPFPWQQLKENLDMYPNAKTIVWAQ 966 
                     5899999735789**********8899999***********************885.5************************************ PP

  OxoGdeHyase_C   92 eEpkNqGawsfveprletvlkek.kkkkkklryvgreasaspAtGskkvhkkeqealleeaf 152 
                     eEp N+Gawsfv+pr+et+l+++ ++++k+++y+gr++sas+AtG k+vhk+e+++lle af
     CCE29847.1  967 EEPLNAGAWSFVQPRIETLLNQTkHHDRKHVMYAGRNPSASVATGLKHVHKTEEQDLLEMAF 1028
                     **********************7689999******************************998 PP

>> 2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.9   3.8e-23   1.7e-19       1      40 [.      59      98 ..      59      99 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 3.8e-23
  2-oxogl_dehyd_N  1 dsfLsgtnaaYiEelYeayleDPsSVdesWrayFknledg 40
                     d+fLsg+ a+Yi+e+Y ++++DP+SV+ sW+ yFkn+e+g
       CCE29847.1 59 DNFLSGGAANYIDEMYMQWKQDPKSVHVSWQVYFKNMESG 98
                     68***********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1038 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 6964.83
//
Query:       CCE29848.1  [L=485]
Description: uncharacterized protein CPUR_03696 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-28   98.0  15.7    4.4e-08   33.7   0.1    7.0  6  WD40         WD domain, G-beta repeat
    0.00022   21.5   0.9         11    6.4   0.0    4.5  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.093   11.7   0.3       0.95    8.4   0.6    2.3  2  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   1.3     0.042   2.5e+02       8      37 ..      63      98 ..      38      99 .. 0.66
   2 !   33.7   0.1   7.4e-12   4.4e-08       4      37 ..     157     191 ..     154     192 .. 0.90
   3 !   18.3   0.0   5.2e-07    0.0031       2      37 ..     204     251 ..     203     252 .. 0.87
   4 !   27.8   0.1   5.1e-10   3.1e-06       2      37 ..     260     302 ..     259     303 .. 0.89
   5 !   10.8   0.2   0.00012      0.74       2      37 ..     347     384 ..     346     385 .. 0.82
   6 !    9.4   0.1   0.00035       2.1       8      37 ..     440     481 ..     432     482 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.042
                E.SS.SSEEEEE....EETTSSEEEEEETTSEEEEE CS
        WD40  8 t.GH.ssvtsla....fspdgawlasGsdDgtvriW 37
                t GH  sv+  a     +p++  l+sGs D t  +W
  CCE29848.1 63 TgGHtRSVRTAAwkpgLPPHKLCLVSGSFDATAGLW 98
                236644476663455555555558999999888887 PP

  == domain 2  score: 33.7 bits;  conditional E-value: 7.4e-12
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 + +l+GH s v ++af p+ga+la++s+D++v iW
  CCE29848.1 157 TLVLEGHdSEVKCCAFAPSGAYLATCSRDKSVWIW 191
                 56899**777************************* PP

  == domain 3  score: 18.3 bits;  conditional E-value: 5.2e-07
                 EEEEEEESS.SSEEEEEEETTSSE...........EEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw...........lasGsdDgtvriW 37 
                 +++ +l  H ++v ++a++pd +            las+s+D+tvriW
  CCE29848.1 204 ETVAVLNEHeGDVKAVAWCPDVPArnarrqysadvLASASYDNTVRIW 251
                 67889999*999****87777777999999999989999********* PP

  == domain 4  score: 27.8 bits;  conditional E-value: 5.1e-10
                 EEEEEEESS.SSEEEEE....EETTSSE..EEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtsla....fspdgaw..lasGsdDgtvriW 37 
                  c+ +l+GH + v+s+       pdg++  l+s+s Dgtvr+W
  CCE29848.1 260 VCVAVLEGHeGTVWSIEweqrPAPDGRFprLLSCSADGTVRVW 302
                 799******8779999888889999999**999*99******* PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.00012
                 EEEEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtlt.GH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +c+ +l   H  +v+s+++s+   +++s ++Dg++ ++
  CCE29848.1 347 RCTAVLPaVHdRDVYSVSWSQKTGLVSSTGRDGKIVLY 384
                 5667765579666************998899****987 PP

  == domain 6  score: 9.4 bits;  conditional E-value: 0.00035
                 ESSSS..EEEEEEETTSSE................EEEEETTSEEEEE CS
        WD40   8 tGHss..vtslafspdgaw................lasGsdDgtvriW 37 
                  +H++  v+++      +w                l++ +dDg vr W
  CCE29848.1 440 NAHGPfeVNHI------TWcrrydvaaekrgedemLVTTGDDGIVRSW 481
                 48944569999......555555559999999999666667******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.97   5.8e+03      18      48 ..      47      77 ..      35      78 .. 0.56
   2 !    5.0   0.0     0.005        30      35      65 ..     161     191 ..     150     224 .. 0.82
   3 !    6.4   0.0    0.0018        11       7      69 ..     236     306 ..     233     317 .. 0.77
   4 !    4.7   0.0    0.0063        38      33      66 ..     352     385 ..     336     422 .. 0.83
   5 ?   -2.1   0.0      0.82   4.9e+03      48      55 ..     464     471 ..     433     484 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.97
  ANAPC4_WD40 18 ellvfRlngqrvwtleedkedsevrsLaWkp 48
                 ++ vf l+     +  + ++ ++vr  aWkp
   CCE29848.1 47 SVTVFSLSSLSSHSSLTGGHTRSVRTAAWKP 77
                 4555555444444444567778888888876 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.005
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrll 65 
                  +++dsev++ a+ p+g  La    d +v + 
   CCE29848.1 161 EGHDSEVKCCAFAPSGAYLATCSRDKSVWIW 191
                  6799*****************9999998775 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0018
  ANAPC4_WD40   7 mDLiAlatedgellvfRlngqrvwtl..eedkedsevrsLaWk....pdgkl..Lavaysdgevrlldaes 69 
                   D +A a+ d+ +++ R +    w      ++++++v s++W+    pdg++  L    +dg+vr+ + ++
   CCE29848.1 236 ADVLASASYDNTVRIWREDSDGEWVCvaVLEGHEGTVWSIEWEqrpaPDGRFprLLSCSADGTVRVWELQQ 306
                  69999999999999999866544444337789999999999974444689876688888999999887765 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.0063
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlld 66 
                    + +d+ v s++W+++  l      dg++ l++
   CCE29848.1 352 LPAVHDRDVYSVSWSQKTGLVSSTGRDGKIVLYQ 385
                  4678999***********************9986 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 0.82
  ANAPC4_WD40  48 pdgklLav 55 
                   ++++L+ 
   CCE29848.1 464 GEDEMLVT 471
                  33444444 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.6   0.00016      0.95     181     280 ..     157     262 ..     141     266 .. 0.68
   2 ?   -3.8   0.0      0.82   4.9e+03     203     217 ..     291     305 ..     282     309 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00016
    Ge1_WD40 181 llkieeh.sliveaafspdGtalatasedGevkffq.vylede.eeprCLheWkPhdGkslssllfldnhke.esdeqfWrfaitgadnnselklWsce 275
                 +l +e h s++ + af+p G+ lat+s d  v  +  +  +++ +e   +     h+G  + ++ ++ ++   ++  q+   ++++a+ ++ +++W  +
  CCE29848.1 157 TLVLEGHdSEVKCCAFAPSGAYLATCSRDKSVWIWEdIGASEAdDEWETVAVLNEHEGD-VKAVAWCPDVPArNARRQYSADVLASASYDNTVRIWRED 254
                 45555553799999***************999999635555442556677777788885.555666655554257778888888888888888888544 PP

    Ge1_WD40 276 l...WtCl 280
                 +   W+C+
  CCE29848.1 255 SdgeWVCV 262
                 32337776 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.82
    Ge1_WD40 203 atasedGevkffqvy 217
                   +s+dG+v+ + + 
  CCE29848.1 291 LSCSADGTVRVWELQ 305
                 556788888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3401.30
//
Query:       CCE29849.1  [L=216]
Description: uncharacterized protein CPUR_03697 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1697.94
//
Query:       CCE29850.1  [L=115]
Description: uncharacterized protein CPUR_03698 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 936.85
//
Query:       CCE29851.1  [L=813]
Description: probable xylulose-5-phosphate phosphoketolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-167  556.3   0.0     3e-167  556.0   0.0    1.1  1  XFP_N     XFP N-terminal domain
    5.3e-81  270.5   0.0    7.9e-81  270.0   0.0    1.3  1  XFP       D-xylulose 5-phosphate/D-fructose 6-phosphate phosp
      4e-79  264.8   0.0    6.3e-79  264.1   0.0    1.3  1  XFP_C     XFP C-terminal domain


Domain annotation for each model (and alignments):
>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  556.0   0.0  5.1e-171    3e-167       6     363 ..      27     384 ..      22     385 .. 0.99

  Alignments for each domain:
  == domain 1  score: 556.0 bits;  conditional E-value: 5.1e-171
       XFP_N   6 elkkldkywraanylavgliylkdnpllreplkeedvkarllGhwGtvpGlsflyahlnriikkydqnmlyvvGPGhGgpalvaasylegsyselypei 104
                 +++  + y++a+ yla+g+iyl++npllreplk+e++karllGh+G++pG+ f y h nr+ikkyd++ ++v+GPGhG+pa++++syleg yse+yp+ 
  CCE29851.1  27 DIALYNDYFKASCYLALGMIYLRENPLLREPLKKEHLKARLLGHFGSAPGQIFTYMHFNRLIKKYDLDAFFVSGPGHGAPAVLSQSYLEGVYSEVYPDK 125
                 5666789******************************************************************************************** PP

       XFP_N 105 skdeeGlkklfkqfsfPGGipshvaaetPGsiheGGelGyalshayGavldnPdlivacvvGdGeaetGPlatswhsnkflnPaedGavlPilelnGyk 203
                 s d eGl++++k+fsfPGGi+sh+++etPGsiheGGelGy++sha+G+v+d+P+li+ ++vGdGeaetGPlatswhsnkflnP++dGavlP+l+lnGyk
  CCE29851.1 126 SLDVEGLQNFLKHFSFPGGIGSHATPETPGSIHEGGELGYSISHAFGSVFDHPELIALTMVGDGEAETGPLATSWHSNKFLNPITDGAVLPVLHLNGYK 224
                 *************************************************************************************************** PP

       XFP_N 204 isnptilarisdeelkklfeGlGyepafvededteslhkllaevldkaveeihdiqkearsneeasrPkwPmiilrtPkGwtgPkyvdGkkvegsfrah 302
                 i+npt+laris++elk+lf G+G+ep fve++++e++h+++a++++++v+ i++ qk+ar +++a rP+wPmi+lrtPkGwt+P+ +d k + g++rah
  CCE29851.1 225 INNPTVLARISHDELKNLFIGYGWEPFFVEGDEMETMHQAMAATMEHCVDLIKQYQKKARDSNKAFRPRWPMIVLRTPKGWTAPRKLDDKYLGGFWRAH 323
                 *************************************************************************************************** PP

       XFP_N 303 qvPlalarentaklellkewlksykpeelfdedgslkeelkelaPkgekrlaanpeanggl 363
                 qvP++  ++n+++l+ l++w++ y+p+ lfde+g++++ ++ l P+g +r++an +anggl
  CCE29851.1 324 QVPITDVNTNPDHLKILENWMRGYEPDRLFDENGAPIAAVRSLCPEGRRRMSANLVANGGL 384
                 ***********************************************************98 PP

>> XFP  D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.0   0.0   1.3e-84   7.9e-81       3     176 .]     415     591 ..     413     591 .. 0.96

  Alignments for each domain:
  == domain 1  score: 270.0 bits;  conditional E-value: 1.3e-84
         XFP   3 lgkylrdvlkknpenfrifgPDetaSnrLnavfevtkrqwqeeieee...deelaaeGrvievlsEhlcegllegYlltGrhglfasyEaflrivdsmv 98 
                 ++ ylrd+++ n++nfr+fgPDet+Sn+L +v+e+ k+ w+ e+ ee     +la  Grv+e+lsEh+ceg+legY+l+Grhgl++syE f++i+dsmv
  CCE29851.1 415 MSVYLRDIIALNMHNFRLFGPDETESNKLARVYEAGKKVWMGEYFEEdqnGGNLAMAGRVMEMLSEHTCEGWLEGYILSGRHGLLNSYEPFIHIIDSMV 513
                 788****************************************9977233456888******************************************* PP

         XFP  99 nqhakflkkakelewrkdvaslnllltstvwrqdhNgfsHqdpglidavlnkkaevvrvylPpDaNtllsvldhclrs 176
                 nqh+k+++k+ e+ewr++vasln+llt+ vwrqdhNgf+Hqdpg++d+v+nk++evvr+ylPpD N+llsv+dhcl+s
  CCE29851.1 514 NQHCKWIEKCLEVEWRAQVASLNILLTALVWRQDHNGFTHQDPGFLDVVANKSPEVVRIYLPPDGNCLLSVMDHCLQS 591
                 ****************************************************************************97 PP

>> XFP_C  XFP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.1   0.0   1.1e-82   6.3e-79       1     202 []     602     803 ..     602     803 .. 1.00

  Alignments for each domain:
  == domain 1  score: 264.1 bits;  conditional E-value: 1.1e-82
       XFP_C   1 KqpepqylsldeAeehckkGasiwewastdegeepdvvlagiGdeptlEvlaAvellreelpelkvrvvnvvdLmklqeesehphglsdeefdelFtkd 99 
                 Kq++ qyl+++ A++hc+kG++iw  +std+g epd+++a++Gd+ t+E+laA++ll +++p+lk+r++n vdL+kl ++s+h hgl+d+e+ +lFt+ 
  CCE29851.1 602 KQDHLQYLDMESAIQHCTKGIGIWPQFSTDKGCEPDLIMASCGDISTQECLAATDLLLQHFPDLKIRFINCVDLFKLIHPSDHLHGLTDKEWVSLFTDT 700
                 9************************************************************************************************** PP

       XFP_C 100 kpvifnfHgYptlikrLlykrknherlhvrgYkeeGtttTpfdmlvlnevdRfhlaidaikrveklkkkaaelaeklkekleehkkyireegeDlpeve 198
                 kpv+fnfH+Yp+l++rL+ykr+ +++lhv+gY+e+G+++Tp++++++n++dRf+la+dai+++++l+ + a+++++l++++ ++++++ e+g D+p+++
  CCE29851.1 701 KPVVFNFHSYPWLVHRLTYKRPGNQNLHVHGYREKGNIDTPLELAIRNKTDRFSLAMDAIDHMPALRIRGASARQALQNEQIAAEHVAFENGIDPPDLD 799
                 *************************************************************************************************** PP

       XFP_C 199 dwkw 202
                 +w+w
  CCE29851.1 800 NWTW 803
                 **98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 5652.41
//
Query:       CCE29852.1  [L=293]
Description: uncharacterized protein CPUR_03700 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-37  127.1   0.0    8.6e-37  126.9   0.0    1.1  1  AIM24     Mitochondrial biogenesis AIM24


Domain annotation for each model (and alignments):
>> AIM24  Mitochondrial biogenesis AIM24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   0.0   4.8e-41   8.6e-37      49     201 .]       7     214 ..       1     214 [. 0.85

  Alignments for each domain:
  == domain 1  score: 126.9 bits;  conditional E-value: 4.8e-41
                 -----EEEEEEE...........S.SS-...EEEEE--SSSE.EEEEEEG.GTT.EEEEEGGGEEEEETT-EEEEEEEE..--.SSGGGTS-EEEEEEE CS
       AIM24  49 ltgeslfllkft...........akiss...gtvllapklpg.tivtlel.gggdwlivqkdafLAatgnveldikfqk..gl.kglfggeglflqklt 128
                 +++++l+ll++            ++iss   +t+l+a+k+p+ t+ +l+l g++dw++ q++a+LA+tg++ l ++++   +l            ++lt
  CCE29852.1   7 NAQSTLSLLNPLpraalgvpflyQRISSttpVTALIASKSPTtTMSVLHLdGTTDWIVSQRNALLAWTGHT-LTLTSNIqrKLaL-----AHWGSTHLT 99 
                 8899999999999999999999966666666************999999989******************9.4444443113322.....23445**** PP

                 SSSEEEEEEECSEEEEEEE.EEEEEEEGGGEEEEETT.............EEEEEEEE.T............................T---STTTTS- CS
       AIM24 129 GrGlvalsgyGaiyeielkageelvvdpghlvafsgs.............lkfdierv.g............................glkrrligGeg 185
                 GrGlvals++G+iy+++l++gee+ ++pg++va+  s              +++i+++ g                            +++rr+i+G++
  CCE29852.1 100 GRGLVALSAPGQIYQLTLGEGEEFLAHPGSVVAYAVSrnapqpflmkstsFRLQIPTLtGwlpetelgkklrssaaykflaaalynmrTMTRRTIWGDR 198
                 *************************************999999999999988888888526667777888999999999999999999*********** PP

                 EEEEEEEEEEEEEESS CS
       AIM24 186 lflkltGpgtvllqsr 201
                 lfl+++Gp t+ll+sr
  CCE29852.1 199 LFLQFKGPATLLLSSR 214
                 **************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2284.14
//
Query:       CCE29853.1  [L=678]
Description: related to chromokinesin Xkid [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-82  276.5   0.0    3.4e-82  276.1   0.0    1.2  1  Kinesin      Kinesin motor domain
    1.8e-22   79.9   0.0      3e-22   79.1   0.0    1.4  1  Microtub_bd  Microtubule binding


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.1   0.0   3.8e-86   3.4e-82       1     333 []       8     334 ..       8     334 .. 0.91

  Alignments for each domain:
  == domain 1  score: 276.1 bits;  conditional E-value: 3.8e-86
                 EE-SSSHHHHTTTTEBCEEEECTCTCEEE.EEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC.TT CS
     Kinesin   1 RvRplnekekeeeeeeeveveeekkeeek.kskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk.ee 97 
                 R+Rpl eke +++     +  e  k++++ k  + ++  ee +f+F++v+d++++qe+++++ ++p ++s+++G  +tifaYG+tg+GKT+Tm g  + 
  CCE29853.1   8 RIRPLLEKELDKDIIVRPDSVEPGKPHTIiKIPSPKNGAEEFSFAFNAVYDQSTSQETLFTSEVQPHLKSLFQGHDVTIFAYGVTGTGKTHTMRGGlKL 106
                 99*******998877766666666655550555567777889*****************************************************9888 PP

                 TSBSHHHHHHHHHHHHHHHCTTTH..EEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTS CS
     Kinesin  98 eeeGiipraleelFesikkekeek..ekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkv 194
                 +++G+ipr l+ +F++ kk ++++   ++++v++sy+EiYn++++DLLes ++++ + l +r +++ g+++v+gl+e+ +++++++ +l  ++++nr +
  CCE29853.1 107 ADRGVIPRLLSGVFRRGKKIEKDTegGTTVTVSLSYYEIYNDKVFDLLESPDKRTPSGLPLRAEAN-GRTVVAGLSERACEDLRDFEKLYIEANTNRVT 204
                 99************99887665542267889999*****************9888899*****999.56****************************** PP

                 TTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHH CS
     Kinesin 195 aetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrl 293
                 a+tkln++SSRSHa+++++++q++++      +k+s+++ +DLAGsE  ++t + ++erl E+a+iNkSL++L+++i+a+++   ++ ipYR+Sk+Tr+
  CCE29853.1 205 ASTKLNAHSSRSHAILRVKVTQTSED-----MIKVSTVSAIDLAGSEDNRRTDN-GKERLVESAAINKSLFVLSQCIDAISRG--DRRIPYRESKMTRI 295
                 **********************9966.....3689****************996.8999************************..************** PP

                 TGGGHS.SSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 294 LqdsLg.Gnsktlmivtvspssenleetlstlkfaerakei 333
                 L  sLg  n  t+mi+++ p ++   +tls+l+ ++rak+i
  CCE29853.1 296 L--SLGqNNGITVMILNLAPLRSYHLDTLSSLNVSSRAKRI 334
                 *..67725789****************************87 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.0   3.4e-26     3e-22      21     149 .]       2     154 ..       1     154 [. 0.85

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 3.4e-26
                  B-EEEEEEECCCS-T..................EEEETTT....TTTEEEE-SEEEECTTHCCCCC.CCCHHHHHHHHTT--EEEEEEES........ CS
  Microtub_bd  21 niRvfarvrpelesek.................akikfpe.eekkkkkefsFdrvfeseseqeevf.eeisqlvqsaldgynvcifaygqTGsGKtyT 99 
                  ++Rv ar+rp le+e                  + ik+p+ ++  ++ +f F+ v++++++qe +f +e++  ++s ++g +v+ifayg TG GKt+T
   CCE29853.1   2 SVRVVARIRPLLEKELdkdiivrpdsvepgkphTIIKIPSpKNGAEEFSFAFNAVYDQSTSQETLFtSEVQPHLKSLFQGHDVTIFAYGVTGTGKTHT 99 
                  59************86766666555555555554444444888999*************9887766379999999999******************** PP

                  ..........ST-HCHHHHHHH...HHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 100 meg..eeeeagmipraveeife...tiselkekgwkyeielqfveiynekvqDlL 149
                  m g  + +++g+ipr+++ +f+   +i++ +e g +++++l++ eiyn+kv DlL
   CCE29853.1 100 MRGglKLADRGVIPRLLSGVFRrgkKIEKDTEGGTTVTVSLSYYEIYNDKVFDLL 154
                  ***9999**************72225777778999*******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1079  (0.0601818); expected 358.6 (0.02)
Passed bias filter:                      664  (0.037035); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.39
# Mc/sec: 5179.48
//
Query:       CCE29854.1  [L=128]
Description: uncharacterized protein CPUR_03702 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   11.9   1.4       0.95    9.3   0.1    2.0  2  CSRNP_N   Cysteine/serine-rich nuclear protein N-terminus


Domain annotation for each model (and alignments):
>> CSRNP_N  Cysteine/serine-rich nuclear protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1    0.0084   1.5e+02      43      71 ..       9      37 ..       1      89 [. 0.62
   2 ?    9.3   0.1   5.3e-05      0.95      17      44 ..      96     122 ..      91     127 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.0084
     CSRNP_N 43 kkftlaehaieqkrlrreklrerlkeekl 71
                 +  l+ ++ eq+++rr++ r++ +++ +
  CCE29854.1  9 IQAKLELFRLEQRYTRRRNRRSTFQTNAI 37
                45677888888888888777766655544 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 5.3e-05
     CSRNP_N  17 pRlqgftsvPsqGGstLGmakkhsslkk 44 
                 +Rl  f+s+Ps GG t G +++h+ +++
  CCE29854.1  96 KRLHRFSSIPSFGG-TFGFKERHQVMER 122
                 68899*******99.89******98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1094.71
//
Query:       CCE29855.1  [L=662]
Description: related to subtilisin-like serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-40  139.1   1.0    2.5e-40  138.6   1.0    1.2  1  Peptidase_S8  Subtilase family
    0.00026   21.7   0.0    0.00068   20.3   0.0    1.8  1  fn3_5         Fn3-like domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   1.0   2.8e-44   2.5e-40       1     266 [.     146     404 ..     146     439 .. 0.85

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 2.8e-44
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEET....T-SS-TT-SC-SSS.......HHHHHHHHHH-B..SSSSSB-SSTTSE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngad....settstnwarddngnsie...HGthvAGiaaanapeegekngvapgak 90 
                   gkg+++a++DtGvd+sh  l   +    k++      g++++g +    s + ++++ + d +   +   HGthvAGi+a++   ++ ++gvap+a+
    CCE29855.1 146 GKGTKIAIVDTGVDYSHEALGGCFGRGCKVT-----GGYDLVGPKwdslSAKVHPKQPDGDPM---DfkgHGTHVAGIIAGK---NEWFSGVAPEAE 231
                   89*******************9998888874.....666655544110133444444444444...4455************...99********** PP

                   EEEEE-SSTTSB-HH...HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEEC..TTTS CS
                   xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
  Peptidase_S8  91 ilsvkvldtsggsmetg.teliraieeaaedkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgt..psts 184
                   +l +kv++++ g + t+ + li+a+ +a   ++dvi+ s++    ++ +++  + l++ r   +kgv+v i+aGN+g        + p+++   s+ 
    CCE29855.1 232 LLMYKVFSDEPGPSDTTeDVLIQAFCDAYSAGADVISASVN--RPNGFVDSPWA-LVASRIA-EKGVFVSIAAGNEG-------ENGPFYSgvASNG 317
                   *******99999988887999********************..67777776655.6777777.99************.......4555555224444 PP

                   TTCEEEEEES.............TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHT CS
                   xxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 185 knvitvgayt.............tegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalp 266
                   + v++v+a++             +    a+f+s Gp+ +  lkpdi apG +++st+  ++        +q+ sG+SmA+P +ag+aAl +s++ 
    CCE29855.1 318 RHVVSVAAINttgdpklhkagpeSRPVAAYFTSWGPTNELTLKPDIGAPGYDVLSTYLDHG--------FQTDSGSSMAAPYIAGVAALYISEHG 404
                   79*******************99888999********************************........********************999875 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   7.6e-08   0.00068       1     114 [.     468     581 ..     468     582 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.6e-08
       fn3_5   1 vaLkeigdk.fsftltlkNtsnkaltykvsandvlTdl...adkeegklilkaaspeikeaaltfetskvtvpAnssktvtvtldlpsdakkkngyfve 95 
                 ++L +++++  + ++t++N  n++  y++ ++++   +    + + ++l + +   +i  +a+   +s   ++A+s+k +++++ lp+ +++   +++ 
  CCE29855.1 468 ISLLDTETFvPEWNITVTNGANRTTHYTFHHEPLPGVEiydGAGAIKQLSKLRPRNNI--SAIVSLPSGSSIKAGSKKVFSIKFELPRHVNDDMLPLYG 564
                 678899999999********************33333321222233333333333333..57777788889**************************** PP

       fn3_5  96 GfvtlkdsedknpelsvPY 114
                 G +++k+++++  +l +PY
  CCE29855.1 565 GKLHIKGDNGE--DLCIPY 581
                 ***********..*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4851.72
//
Query:       CCE29856.1  [L=483]
Description: related to zinc transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-24   86.5  36.4    1.8e-12   47.2   4.7    3.8  4  Zip            ZIP Zinc transporter
     0.0037   16.1   1.3     0.0037   16.1   1.3    1.5  2  O-antigen_lig  O-antigen ligase like membrane protein


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.9       0.2   1.8e+03     145     161 ..     108     124 ..      74     149 .. 0.51
   2 !   38.6   7.9   7.9e-14   7.1e-10       2     102 ..     161     261 ..     160     283 .. 0.86
   3 !   18.4   1.4   1.1e-07     0.001     210     243 ..     300     333 ..     261     339 .. 0.78
   4 !   47.2   4.7     2e-16   1.8e-12     242     332 ..     380     479 ..     375     480 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.2
         Zip 145 adtdadskeelrngkqe 161
                  +td +++ +++++  +
  CCE29856.1 108 GHTDGNTGDKDHESAHK 124
                 11122211111111111 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 7.9e-14
         Zip   2 llkilaiiaililsllgllgpllvpkiskllsklllslllafavGvllgtaflhLlPealealeesqleeehth.plagllvllGflllllveklltmi 99 
                 +l+++++++i+++s+lg++ p+++ +     ++ll+ +l++f+ G++++taf+hL+ +a  ++++++l++  +       +++ G+ l +lve + + +
  CCE29856.1 161 GLRVGLLFVIMATSALGVFAPIFLHNVLPQKFSLLFIVLKQFGTGIIISTAFVHLFVHASLMFGNKCLGDL-GYeGTSAAILMAGLTLSFLVEYIGQRV 258
                 7899****************************************************************995.33489999999**********998877 PP

         Zip 100 vek 102
                 v  
  CCE29856.1 259 VLA 261
                 766 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 1.1e-07
         Zip 210 sstgislfiAvllHelpeelglgaiLlkaglsrk 243
                 +s +i+lfi++l+H+++e+l+lg++++  g+s  
  CCE29856.1 300 DSFFITLFIVILFHQMFEGLALGTRIATIGTSAN 333
                 467899********************99988865 PP

  == domain 4  score: 47.2 bits;  conditional E-value: 2e-16
         Zip 242 rkkavllnllfaltaplGiliGilvrs..isessgaeivsgillalsaGtflYvalvellphEllnek.......gssslkqsllqllglllGfalmll 331
                 + k++ l+ lfa+++p+G++iGi+v +  +++++   i+ g l+alsaG+++ +++ve+ +++ +          ++ + ++ +l  +gll+G+a+m+l
  CCE29856.1 380 MTKKLSLAALFAFVTPIGMAIGIGVLNrfNGNDKSTIIAIGTLDALSAGILVWTGVVEMWAADWMTGAhghkselADADTVTVVLGGAGLLTGMAVMSL 478
                 67888899****************************************************988877777778889888999****************99 PP

         Zip 332 l 332
                 l
  CCE29856.1 479 L 479
                 8 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   1.5      0.68   6.1e+03     219     252 ..     165     198 ..     161     222 .. 0.54
   2 !   16.1   1.3   4.1e-07    0.0037     170     219 ..     280     329 ..     277     332 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 0.68
  O-antigen_lig 219 Gliiiliialilllik.lilkkkklkkkklllaii 252
                    Gl+ +++++ +l ++  + l +   +k++l l+i+
     CCE29856.1 165 GLLFVIMATSALGVFApIFLHNVLPQKFSL-LFIV 198
                    555555555555555555555555555555.2222 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 4.1e-07
  O-antigen_lig 170 aNelssilllllpivllyllkkkks.ikfiiillllillllllGTKvalfG 219
                     Ne+ sil++ + i++  +l++ +    fi+il+ +++  l lGT++a++G
     CCE29856.1 280 SNEVVSILVMEAGILF-HSLRDSFFiTLFIVILFHQMFEGLALGTRIATIG 329
                    69**************.555555554999********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3404.17
//
Query:       CCE29857.1  [L=924]
Description: probable DNA mismatch repair protein MSH2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-83  278.0   0.1    6.5e-83  277.4   0.1    1.3  1  MutS_V          MutS domain V
    2.3e-37  129.1   0.6    1.4e-36  126.5   0.4    2.5  2  MutS_III        MutS domain III
    1.1e-21   77.5   1.3    2.1e-20   73.4   0.0    2.8  3  MutS_II         MutS domain II
    2.4e-19   69.6   0.0    1.9e-18   66.7   0.0    2.5  3  MutS_I          MutS domain I
    1.8e-12   47.4   1.7    1.8e-12   47.4   1.7    3.1  3  MutS_IV         MutS family domain IV
  ------ inclusion threshold ------
       0.02   14.5   0.1      0.074   12.6   0.0    2.0  2  AAA_27          AAA domain
      0.022   15.0   0.1      0.091   13.0   0.1    2.1  2  GAD             GAD domain
      0.097   11.7   3.6      0.034   13.2   1.0    1.5  2  Clusterin       Clusterin
        1.6    8.5   8.5       0.83    9.5   0.5    2.9  3  Apolipoprotein  Apolipoprotein A1/A4/E domain


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.4   0.1   3.3e-86   6.5e-83       1     188 []     656     851 ..     656     851 .. 0.98

  Alignments for each domain:
  == domain 1  score: 277.4 bits;  conditional E-value: 3.3e-86
                 EEEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHHH CS
      MutS_V   1 llitGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlaia 99 
                 l+itGpnm+Gksty+rq ++i+l+aqiG+fvp+++ae++i+d+i++RvgasD++ kg stFm+EmlEta+ilk+at++sl+i+DElGRGtstydG+++a
  CCE29857.1 656 LIITGPNMGGKSTYIRQAGVIALMAQIGCFVPCSEAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATKESLIIIDELGRGTSTYDGFGLA 754
                 59************************************************************************************************* PP

                 HHHHHHHHHTT--EEEEEES-GGGGGHHHHSTTEEEEEEEEE........EETTEEEEEEEEEES--SS--HHHHHHHTT--HHHHHHHHHHHHHTT CS
      MutS_V 100 lavaeyllekikaktlfatHyheltklaekleevknlhlavk........eeeedivflykvkegaaeksyGikvaklaglPesvverArevlkele 188
                 +a+ e+++++i ++++fatH+helt+la+ +++v+nlh++++        + ++++v+lykv++g++++s+Gi+va+l+ +P++vv++Ar++++ele
  CCE29857.1 755 WAISEHIVKEIGCFAMFATHFHELTALADLHPQVHNLHVTAHitgsgtgnDGKREVVLLYKVQPGICDQSFGIHVAELVRFPDKVVRMARRKADELE 851
                 ******************************************99**998767799**************************************9996 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.4   7.1e-40   1.4e-36       1     191 []     295     600 ..     295     600 .. 0.84
   2 ?   -2.0   0.0       1.7   3.4e+03     154     183 ..     690     719 ..     633     732 .. 0.75

  Alignments for each domain:
  == domain 1  score: 126.5 bits;  conditional E-value: 7.1e-40
                 HHHHHTTSSS-TTS.SSSS-HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHH.T..TT.HHHHHHH.HTT---HHHHHHHHHTT---HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III   1 aTlrnLeilenlrggskegsLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVee.leneelreelrel.lrrlpDleRllsrislgkakardl 97 
                 a+l++L++    r+gsk++s++gvl++++T++G+RlL +wl+qPl+d++ I++R+++Ve  ++++elr++++e+ lr++pDl Rl +r++ gka+ +d+
  CCE29857.1 295 AALKALNLMPGPRDGSKTMSIYGVLNHCKTPVGSRLLAQWLKQPLMDKDNIEKRQQLVEAfFTDTELRQTMQEEhLRSVPDLYRLSKRFQRGKANLEDV 393
                 5899****77667778899****************************************99***********887********************9996 PP

                 HH..........H............HHHHHHHHTTTTT---SSTHHHHH............HHHHHHHHHHB-SS--SSGGGS--B-T........... CS
                 xx..........x............xxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF
    MutS_III  98 ka..........l............lealkaleelvallekeklaesee............eslaelleeaideeplalekegedlra........... 151
                  +          +            ++ l++                 +             +l++++e+++d ++l++++   ++++           
  CCE29857.1 394 VRayqviirlpgFigtlegvmdeayRDPLDE-----------------AyttklrdlseslGKLQDMVEQTVDLNALDRHEYIIKSEYdqglriirkkl 475
                 5533344343441233333332222444443.................022223223222235779****************999999*********** PP

                 ....................................................................................HHHHH.HHHHHHHHH CS
                 ....................................................................................xxxxx.xxxxxxxxx RF
    MutS_III 152 ....................................................................................ieale.qelfqelle 165
                                                                                                     +++++ ++l++e+++
  CCE29857.1 476 dqldrdiraefdesaedlgqeadkkifletnhkvhgvcmrltrqeagcirnksryqecstqkngvyfttkkmqsyrrehdqlsqNYNRTqSSLVHEVVH 574
                 ********************************************************************************9999555554788999998 PP

                 HHHHTHHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 166 eveealerlrrlaealaeLDvllSlA 191
                   ++++++l+rla +l++LDv++S+A
  CCE29857.1 575 VASSYCPVLERLAGVLSHLDVIVSMA 600
                 8899********************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHHHTHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 154 aleqelfqelleeveealerlrrlaealae 183
                 ++e ++f+++l++v ++ ++l+ +++ +ae
  CCE29857.1 690 EAELTIFDSILARVGASDSQLKGVSTFMAE 719
                 556689999999997777999999988887 PP

>> MutS_II  MutS domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   1.1e-23   2.1e-20       3     136 ..     136     279 ..     134     280 .. 0.90
   2 ?   -3.6   0.1       6.3   1.3e+04      83     104 ..     343     364 ..     341     376 .. 0.73
   3 ?    2.1   0.0      0.11   2.2e+02      71     111 ..     839     878 ..     821     891 .. 0.82

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 1.1e-23
                 EEE..EEEE.TTTSEEEEEEEETTTTEEEEEEEEE...-HHHHHHHHHH-ESEEEEESS-SCCCHHHHHHCHCTTT-EEEEESCCCCSHCCHHHHCHHH CS
     MutS_II   3 laA..isek.regrrvGlafiDlstgefvvsefed...feeleaeLsrlsPkElllpedlsestaeeessklrelrsrvgvretvefesekaserleed 95 
                 ++A  i +k  e+r vG++f+D s +e++vsef d   ++++e++L +l+++E++++ d  e++   e+ klr++ +++g   ++  +s++  +++e+d
  CCE29857.1 136 IMAvkITAKaSEARNVGVCFADASVRELGVSEFLDndlYSNFESLLIQLGIRECVVQFDKAEKDKDPELAKLRQIMENCGIAIAERPASDFGVRDIEQD 234
                 889777777566677*****************************************************************************9999999 PP

                 B--STTTTTTT....GGG-HHHHHHHHHHHHHCCCCCSCCCCT-C CS
     MutS_II  96 fsvedldgfgl....ekekklalaAlgalisYleetqkekelshl 136
                 ++  + d++ +    ++e+kla+ +++ li+Yl  +q+ ++++++
  CCE29857.1 235 LARLLKDDKSInllpQSELKLAMGSAASLIKYLGAMQDPSNFGQY 279
                 97766666544669***********************99887776 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.3
                 CSHCCHHHHCHHHB--STTTTT CS
     MutS_II  83 fesekaserleedfsvedldgf 104
                 +++ek+++ +e +f   +l+++
  CCE29857.1 343 DNIEKRQQLVEAFFTDTELRQT 364
                 5788889999999987777774 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.11
                 TT-EEEEESCCCCSHCCHHHHCHHHB--STTTTTTTGGG-H CS
     MutS_II  71 lrsrvgvretvefesekaserleedfsvedldgfglekekk 111
                 +++  ++ ++++++ ++++e+ ++++s+ed+++ g+ ++kk
  CCE29857.1 839 VVRMARRKADELEDFTTKHEDNALSYSKEDVEE-GSSMLKK 878
                 567778889999*******************99.6734333 PP

>> MutS_I  MutS domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   9.5e-22   1.9e-18       2     112 ..      14     122 ..      13     123 .. 0.91
   2 ?   -3.8   0.0       7.3   1.5e+04      65      87 ..     230     252 ..     222     259 .. 0.80
   3 ?   -1.2   0.0       1.2   2.3e+03      60      87 ..     819     846 ..     815     862 .. 0.81

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 9.5e-22
                 HHHHHHHCCCHH-TTCEEEEEETTEEEEECHHHHHHHHHCSSSSTT.E..SSSSC..EEEEEEEHHHHHHHHHHHHHT.T-EEEEEEE-S-HHHHS.S- CS
      MutS_I   2 plmkqylelkkkykdavlffrvGdfYelfgeDAviaareleitltkrk..ksseke.ipmagvPehalekylrkLvek.gykVavveqtetpaekkgvv 96 
                 ++++++++l++  +d+v++f++Gd+Y+++geDA ++a+++++t+++ +  ++++++ +p+++++ + ++++lr+ + k g++V+++e        +g +
  CCE29857.1  14 GFIRFFKSLPAVGEDTVRIFDRGDWYTAHGEDAFFIAKTVYKTTSVVRqlGRNDASgLPSVTMTMTVFRQFLREALLKlGKRVEIWESQ------SGRM 106
                 689***************************************998877675555668***************9988877********99......459* PP

                 -EEEEEEEBTTC-TTS CS
      MutS_I  97 krevvrviTpGtltde 112
                 +++ v+ ++pG+l+d 
  CCE29857.1 107 NWKCVKKASPGNLQDV 122
                 ************9985 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7.3
                 HHHHHHHHHHHTT-EEEEEEE-S CS
      MutS_I  65 alekylrkLvekgykVavveqte 87 
                  +e+ l++L++ ++++ +  q+e
  CCE29857.1 230 DIEQDLARLLKDDKSINLLPQSE 252
                 567778999**9**999999987 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.2
                 EEEHHHHHHHHHHHHHTT-EEEEEEE-S CS
      MutS_I  60 gvPehalekylrkLvekgykVavveqte 87 
                 g+ ++++  ++++Lv+   kV ++   +
  CCE29857.1 819 GICDQSFGIHVAELVRFPDKVVRMARRK 846
                 788999**********988887776554 PP

>> MutS_IV  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.3   4.7e+03       3      16 ..     201     214 ..     200     220 .. 0.85
   2 !   47.4   1.7   9.1e-16   1.8e-12       1      89 [.     463     557 ..     463     560 .. 0.92
   3 ?   -0.2   0.2      0.64   1.3e+03       4      32 ..     860     888 ..     858     898 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.3
                 SHHHHHHHHHHHHH CS
     MutS_IV   3 deeLdelrdrleel 16 
                 d+eL +lr+++e+ 
  CCE29857.1 201 DPELAKLRQIMENC 214
                 89********9985 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 9.1e-16
                 TTSHHHHHHHHHHHHHHHHHHHHHCCCCCCCT-...TTBEECCC.SSSEEEEEE-TCCCTTT--..SEEEEEECTCEEEEECCCHHHHHHHHHHH CS
     MutS_IV   1 gfdeeLdelrdrleelekeleeleekereklgi...kslkveyn.kvlGyylevtrseakkvpk..efirlqtlknseryttaelkkleaellea 89 
                 ++d+ L  +r++l++l +++ ++ ++ +e+lg+   k++ +e n kv+G ++++tr+ea ++++  ++ +++t+kn++++tt++++++ +e  ++
  CCE29857.1 463 EYDQGLRIIRKKLDQLDRDIRAEFDESAEDLGQeadKKIFLETNhKVHGVCMRLTRQEAGCIRNksRYQECSTQKNGVYFTTKKMQSYRREHDQL 557
                 69999*******************************999988652789**************8889**********************9998776 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.64
                 HHHHHHHHHHHHHHHHHHHHHCCCCCCCT CS
     MutS_IV   4 eeLdelrdrleelekeleeleekereklg 32 
                   L  +++ +ee  + l++l+++ +e+ g
  CCE29857.1 860 NALSYSKEDVEEGSSMLKKLLKQWKEQVG 888
                 567888999***************99987 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.9   3.7e+03     152     193 ..     520     560 ..     496     570 .. 0.60
   2 ?   12.6   0.0   3.7e-05     0.074      14      44 ..     641     671 ..     633     678 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.9
      AAA_27 152 saGlaslrevleaLeaeadelfkprkskkrainealeeleea 193
                 +aG+ + ++ +++ +++++ ++ ++k+ + ++++++++l++ 
  CCE29857.1 520 EAGCIRNKSRYQECSTQKNGVYFTTKKMQ-SYRREHDQLSQN 560
                 44555555555555666666666666555.555555555554 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.7e-05
      AAA_27  14 ftdrsldfsaeeadlhliyGpNEAGKstalr 44 
                 f  + ++f ++++++ +i GpN  GKst +r
  CCE29857.1 641 FITNDIEFTRDKSSFLIITGPNMGGKSTYIR 671
                 667889**********************876 PP

>> GAD  GAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.2     1e+04      28      57 ..     738     765 ..     732     784 .. 0.66
   2 ?   13.0   0.1   4.6e-05     0.091      14      65 ..     833     883 ..     828     902 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.2
                 HHHHHHHHHHTTHSHCEEEEESSGGEETTT CS
         GAD  28 ideleefakelgakglawikvegegltgpi 57 
                 idel++    +   glaw  +++  +  +i
  CCE29857.1 738 IDELGRGTSTYDGFGLAW-AISEH-IVKEI 765
                 788888888888999999.44442.33344 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.6e-05
                 EEETTG-TTTSHHHHHHHHHHHHHTTHSHCEEEEESSGGEETTTCCCS-HHH CS
         GAD  14 lrvpggaaklsrkeideleefakelgakglawikvegegltgpiakflteee 65 
                 +r+p++   + r++ dele+f +++++++l + k + e+ ++ + k l ++ 
  CCE29857.1 833 VRFPDKVVRMARRKADELEDFTTKHEDNALSYSKEDVEEGSSMLKKLL-KQW 883
                 78999999************************9988888888888874.333 PP

>> Clusterin  Clusterin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.0   1.7e-05     0.034     137     295 ..     367     536 ..     345     577 .. 0.63
   2 ?   -3.8   0.1       2.5   5.1e+03     320     349 ..     854     883 ..     846     884 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
   Clusterin 137 eedeeedaeleqledsfsqlssdvdslfnrslk..........vfkqmqqefdqafqsaflsdldlteee..flpalskarksrllrsl......glen 217
                 ee+ ++  +l +l ++f++ + + +++++              +   m++ +  ++ +a++++l+  +e+  +l+ + + +       +        e 
  CCE29857.1 367 EEHLRSVPDLYRLSKRFQRGKANLEDVVRAYQViirlpgfigtLEGVMDEAYRDPLDEAYTTKLRDLSESlgKLQDMVE-QT------VdlnaldRHEY 458
                 5555555566666666666555555555443333333343333444455555555555555555544333222222221.22......13333345566 PP

   Clusterin 218 lfqpffdfsrsvfesvsevvtetleavedekkqkkeedkegliskklpeqdralCrelrrnssgClklkekCekCqei 295
                 ++++ +d + +++++  ++++++++a+ de+ ++  ++ +++i  + +++  ++C  l r+ +gC++ k++ ++C   
  CCE29857.1 459 IIKSEYDQGLRIIRKKLDQLDRDIRAEFDESAEDLGQEADKKIFLETNHKVHGVCMRLTRQEAGCIRNKSRYQECSTQ 536
                 7778888888888877777888877766666666666666666666667889***********************764 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.5
   Clusterin 320 stqqYdelLqivqehmedtsslleklneqF 349
                  t++ d+ L+  +e +e+ ss+l+kl +q+
  CCE29857.1 854 TTKHEDNALSYSKEDVEEGSSMLKKLLKQW 883
                 445557889999999999999999998885 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.7     0.054   1.1e+02     103     139 ..     450     495 ..     411     501 .. 0.33
   2 ?   -2.4   0.0       1.9   3.7e+03      94     126 ..     554     586 ..     544     593 .. 0.64
   3 ?    9.5   0.5   0.00042      0.83      98     168 ..     844     911 ..     836     923 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.054
                     H.........HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH CS
  Apolipoprotein 103 e.........lrerlerhvealkarlapyveelrqklaerleelke 139
                               ++++ ++++  ++++l+ +  ++r++ +e++e+l++
      CCE29857.1 450 LnaldrheyiIKSEYDQGLRIIRKKLDQLDRDIRAEFDESAEDLGQ 495
                     1112222233222222222222222222222222333333333222 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.9
                     HHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHH CS
  Apolipoprotein  94 qeqlavyaeelrerlerhvealkarlapyveel 126
                      +ql+++ +  +++l ++v  + +   p +e+l
      CCE29857.1 554 HDQLSQNYNRTQSSLVHEVVHVASSYCPVLERL 586
                     456666666666666666666666666666665 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00042
                     CCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSH CS
  Apolipoprotein  98 avyaeelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrekleeqae 168
                     + +a+el++ + +h ++  +  +++vee+ ++l++ l+++ke++ ++ e +    ++++  l+e +++ a+
      CCE29857.1 844 RRKADELEDFTTKHEDNALSYSKEDVEEGSSMLKKLLKQWKEQVGAEGEMSS---DDKIAKLKELVAADAK 911
                     678999*****************************************99998...6666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (924 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 5785.41
//
Query:       CCE29858.1  [L=205]
Description: probable NADH2 dehydrogenase (ubiquinone) 21.3K chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-08   35.2   1.6    1.8e-08   34.7   1.6    1.3  1  Tim17         Tim17/Tim22/Tim23/Pmp24 family
  ------ inclusion threshold ------
          6    6.3   7.9          1    8.9   2.4    1.9  2  5TM-5TMR_LYT  5TMR of 5TMR-LYT


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   1.6     2e-12   1.8e-08       9     108 ..      29     126 ..      22     161 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2e-12
       Tim17   9 gvlGallGavfglvkgsrradtpapskerlreglrsvgkrgpslGknfgvvgglysgiecaleklRgkediwnsvaAGaltGallr...agpqaaavga 104
                  v  a +Ga  gl+ ++ r      + +r   ++  +++ +p +G   ++  + y++++ a ++lR+ked w ++++G+++G+ll+   +  +++++ +
  CCE29858.1  29 TVKMASVGAGVGLFLAAIRMS----MAQRNYGVFGVFTRGAPIIGMCTAA-PAAYTFVSRASNNLREKEDTWSAILGGFVSGGLLAlptGKTRNVLGLG 122
                 455566788888888886655....7888899999999999999977777.99*******************************976644466666555 PP

       Tim17 105 igga 108
                  ++a
  CCE29858.1 123 TAIA 126
                 5544 PP

>> 5TM-5TMR_LYT  5TMR of 5TMR-LYT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.5     0.073   6.5e+02      62      78 ..      35      51 ..      33      69 .. 0.79
   2 ?    8.9   2.4   0.00011         1      22      93 ..      59     135 ..      53     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.073
  5TM-5TMR_LYT 62 vGliagliaglhRyllg 78
                  vG+++gl  ++ R+++ 
    CCE29858.1 35 VGAGVGLFLAAIRMSMA 51
                  8999*********9986 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00011
  5TM-5TMR_LYT  22 glifglfsilgtytgieie.....gaiantRaigvvvaGllgGplvGliagliaglhRyllgGftalacgistilag 93 
                   g+++ +  i+g+ t  + +      a  n+R    + +++lgG++ G + +l  g +R +lg  ta+a+   +++ g
    CCE29858.1  59 GVFTRGAPIIGMCTAAPAAytfvsRASNNLREKEDTWSAILGGFVSGGLLALPTGKTRNVLGLGTAIAVTQGALVYG 135
                   4455555688888888887777766888999999999***********************99889998877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1630.10
//
Query:       CCE29859.1  [L=371]
Description: uncharacterized protein CPUR_03707 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-23   83.1   0.1    1.4e-17   64.0   0.0    2.2  2  tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase
  ------ inclusion threshold ------
        3.3    7.8   8.3       0.42   10.7   0.5    2.4  2  ORC_WH_C     Origin recognition complex winged helix C-termin


Domain annotation for each model (and alignments):
>> tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   3.8e-07    0.0034       2      49 ..      98     145 ..      97     158 .. 0.78
   2 !   64.0   0.0   1.6e-21   1.4e-17      81     195 .]     219     315 ..     187     315 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.8e-07
                  GGSHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEETSSHHHHHHHHHHH CS
  tRNA_m1G_MT   2 kkasekelvslevqllrdytanrrntvddelygggagmvlkaepelea 49 
                  +++ +ke+vs+ +q++r+y++nr  +  ++    g g ++  + e + 
   CCE29859.1  98 QYMTDKERVSMTSQVTRCYSENRNGKYKAHFWISGWGGQMRERFERTM 145
                  78*********************9887777777777776666655544 PP

  == domain 2  score: 64.0 bits;  conditional E-value: 1.6e-21
                  GGGEEEEETTTSSBECCGGTTSSEEEEEESSSSTTCSTTHHHHHHHHHHHHTTTC.EEB-S-CCC...CHCTS..CTTSEHHTEHHHHHHHHHCCCTT CS
  tRNA_m1G_MT  81 keklvylcgdyegvdervdddkvdeysIGdfVlkggekgalvlidavkrllaGvlntaslpedsfsnrllekpnytrpltlrglkVpeiLlsgnhaki 178
                  ++ +vyl+ +++ +++r+++ +   y+IG++V+k++ekg+    +  ++   G+  ta+lp+ ++   + +++  +++l+++  +V+ei+ ++ +   
   CCE29859.1 219 YKDVVYLTSESPYTLQRLEPYT--SYIIGGLVDKNREKGL----CYRRAVQRGIR-TARLPIGQY---MVMQS--RQILATN--HVVEIMAKWLD--C 300
                  789*******************..****************....***********.*********...99999..9******..***********..* PP

                  THHHHHHHHHHHSCSXS CS
  tRNA_m1G_MT 179 enWrlkealertvprRk 195
                  e+W    a+ +++p+Rk
   CCE29859.1 301 EDW--GSAFTQVIPKRK 315
                  ***..***********7 PP

>> ORC_WH_C  Origin recognition complex winged helix C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   2.0     0.094   8.4e+02      84     106 ..      38      60 ..      13      72 .. 0.43
   2 ?   10.7   0.5   4.7e-05      0.42      51     103 ..     300     356 ..     291     366 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.094
    ORC_WH_C  84 eaekkkkkkekeedeedeeewek 106
                 e+ k+++kk+++e+ +++++ ++
  CCE29859.1  38 EDGKEDRKKRRREKRTATKARQR 60 
                 12222222222222222222222 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 4.7e-05
    ORC_WH_C  51 vyDwyeaFkqvlekereedkeseaeeeekak....eeeaekkkkkkekeedeedeee 103
                   Dw +aF+qv++k +  +   +++ +++ +    ++e+ + +++ +++ede+++e+
  CCE29859.1 300 CEDWGSAFTQVIPKRKGGRLIGQHDGDSATEtrgqDSENGDVGEDGKEDEDEDEDED 356
                 67***********87776554433333333333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1077  (0.0600703); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 1681.71
//
Query:       CCE29860.1  [L=494]
Description: related to DNA primase 48K protein PRI1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-56  191.1   0.6    2.3e-56  190.6   0.6    1.2  1  DNA_primase_S  DNA primase small subunit


Domain annotation for each model (and alignments):
>> DNA_primase_S  DNA primase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   0.6   1.3e-60   2.3e-56       1     177 []     199     409 ..     199     409 .. 0.94

  Alignments for each domain:
  == domain 1  score: 190.6 bits;  conditional E-value: 1.3e-60
                    EEEEEETTT-.....TT--HHHHHHHHHHHHHHHHHHHH-----GGGEEEEE--SEEEEEEE--TTEEES-HHHHHHHHHH............... CS
  DNA_primase_S   1 FDiDmddydd....cseatvcekcwkfvsvavkvldellredfgfkdilwvfsgrrGfHcwvsdkdarpltdeeraaivnylnlyrplhpflsrsm 92 
                    FDiD++dydd    c++at+c kcw+f++ a+kv+d +lr+dfgf++i+wv+sgrrG+H+wv+dk++r+l+d +r+ai+ yl+++       ++  
     CCE29860.1 199 FDIDLTDYDDirtcCDKATICSKCWRFMTMAIKVVDVALRDDFGFRHIMWVYSGRRGVHAWVCDKKVRSLDDQKRRAIAGYLEVI-------KGG- 286
                    9********************************************************************************9994.......555. PP

                    .......................HCHHHHCT--------.....................................................---- CS
  DNA_primase_S  93 lkivkpvveeiileeqdpf....eikkllrllpdkslre..kkkw.................................eakedivlvllyprldeq 149
                     ++ k+v  +++l  qdp+      +kll+llpd++l e  + kw                                 eak+divl+++yprld++
     CCE29860.1 287 AQSGKKV-HQDVLDVQDPWdttdRSEKLLQLLPDRNLNEslRRKWdaspgrastskwadidalaktgasksldarallEAKQDIVLEYTYPRLDIE 381
                    5555555.556666677777*********************9999999999999999*************************************** PP

                    -------------....---------.. CS
  DNA_primase_S 150 vtkgikhllkapfcihgktgnvcvpldv 177
                    v+k+ +hllk+pf +h++tg+vcvp+d+
     CCE29860.1 382 VSKKLNHLLKSPFVVHPGTGRVCVPIDI 409
                    **************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3532.86
//
Query:       CCE29861.1  [L=585]
Description: related to SKN7 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-27   93.9   0.7    7.5e-26   90.6   0.9    2.3  2  HSF_DNA-bind  HSF-type DNA-binding
    1.5e-24   86.3   0.0    3.2e-24   85.2   0.0    1.6  1  Response_reg  Response regulator receiver domain
  ------ inclusion threshold ------
      0.061   13.8   0.3       0.12   12.8   0.3    1.5  1  NPV_P10       Nucleopolyhedrovirus P10 protein
      0.067   13.8   2.0       0.13   12.9   2.0    1.4  1  YabA          Initiation control protein YabA
       0.33   11.4   2.5       0.57   10.6   2.5    1.3  1  CENP-H        Centromere protein H (CENP-H)


Domain annotation for each model (and alignments):
>> HSF_DNA-bind  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.29   1.1e+03      44      59 ..      14      29 ..       5      41 .. 0.82
   2 !   90.6   0.9   2.1e-29   7.5e-26       5      96 .]      43     139 ..      19     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.29
                  --HHHHHHHHHHTTEE CS
  HSF_DNA-bind 44 snfssFvrqLnlYgFr 59
                  sn s Fvr+L  Y F 
    CCE29861.1 14 SNASEFVRKLFRYLFP 29
                  78999******99996 PP

  == domain 2  score: 90.6 bits;  conditional E-value: 2.1e-29
                   HHHHHCT...TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSB..TTB--TTSEEEEESS--XXXXXXXXXXXXX CS
  HSF_DNA-bind   5 Lyklled...eelisWsedgksfvvkdkeefakevlpkyfkhsnfssFvrqLnlYgFrkvkrkee..kkkkkskvweFshenFkrgkpelLkkikrk 96 
                   + ++led   +++ +W +dg+sfvv + e+f++++lpk+fkhsn+ssF+rqLn Y+F+kvk +++  +++   +v eF+h++F+ ++++ L++i+rk
    CCE29861.1  43 TIRMLEDpthQDVARWGKDGDSFVVVEGEKFTRSILPKHFKHSNMSSFIRQLNKYDFHKVKPSSDseSSSPGGNVLEFKHPYFRADSKDGLDHIRRK 139
                   5678888888999**********************************************98766644566667788*******************97 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0     9e-28   3.2e-24       1     111 [.     372     484 ..     372     485 .. 0.95

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 9e-28
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH...HHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealell...keekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkaga 94 
                   vl+v+Ddp+ +++  ++l++ g+ ev+ a++g +a+  +    ++++dl+++Di mp++dG+ ++  ir++ p++p+i++t++   ++++e+++ g+
    CCE29861.1 372 VLLVEDDPTCAKIGIKFLNSMGC-EVDHAQNGVDAYTRVssfSRDHFDLMFMDIIMPRLDGVSATMYIRQHCPSTPIIAMTSNIRPDEVNEYFEHGM 467
                   89*********************.*************995545556*************************************************** PP

                   SEEEESSG-HHHHHHHH CS
  Response_reg  95 ddflsKpfdpeeLlkal 111
                   +++l+Kpf++e +lk +
    CCE29861.1 468 NGVLAKPFTKEGMLKSI 484
                   **********9999877 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   3.4e-05      0.12      11      57 ..     156     202 ..     153     244 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.4e-05
     NPV_P10  11 adikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletk 57 
                 + ++ ++++++a qqqv+++qe + +v++ n  L     +L+++ ++
  CCE29861.1 156 QHVSVISEQLTATQQQVQQLQELFAEVSQTNRLLVHEVMTLQKMVNA 202
                 678999********************999999888777777776654 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   2.0   3.7e-05      0.13       8      60 ..     156     208 ..     150     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXX CS
        YabA   8 dkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkek 60 
                 ++++ ++eql+++++++++l+e +ae+ + n+ L  e  +l+++++ +++++ 
  CCE29861.1 156 QHVSVISEQLTATQQQVQQLQELFAEVSQTNRLLVHEVMTLQKMVNAQKQAQF 208
                 678999***************************************76666554 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.5   0.00016      0.57      11      62 ..     154     205 ..     146     220 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
      CENP-H  11 lssellklsqelrelqeeltevekenlrlkrknrelaaellelakekeseke 62 
                 +s+++  +s++l+++q++++++++   +++++nr l+ e+  l+k  +++k+
  CCE29861.1 154 TSQHVSVISEQLTATQQQVQQLQELFAEVSQTNRLLVHEVMTLQKMVNAQKQ 205
                 6888889999******************************888888888772 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1150  (0.0641419); expected 358.6 (0.02)
Passed bias filter:                      763  (0.0425568); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4008.82
//
Query:       CCE29862.1  [L=64]
Description: uncharacterized protein CPUR_03710 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 494.61
//
Query:       CCE29863.1  [L=735]
Description: related to GCD6-translation initiation factor eIF2b epsilon, 81 kDa subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-22   79.8   2.6    1.2e-22   79.8   2.6    2.0  2  W2               eIF4-gamma/eIF5/eIF2-epsilon
    1.4e-12   46.8   7.5    1.5e-08   34.0   2.2    3.2  3  Hexapep          Bacterial transferase hexapeptide (six repea
    0.00021   19.6   1.4    0.00032   19.0   1.4    1.2  1  DUF4954          Domain of unknown function (DUF4954)
    0.00036   20.2  10.2      0.019   14.7   5.0    2.7  2  Hexapep_2        Hexapeptide repeat of succinyl-transferase
     0.0016   18.1   0.0     0.0029   17.2   0.0    1.4  1  NTP_transferase  Nucleotidyl transferase
     0.0035   16.3   4.1       0.13   11.2   0.5    2.2  2  Fucokinase       L-fucokinase
     0.0047   17.3   0.0      0.018   15.4   0.0    2.0  1  NTP_transf_3     MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> W2  eIF4-gamma/eIF5/eIF2-epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.4   4.0         7   1.8e+04      71      78 ..     505     512 ..     504     513 .. 0.81
   2 !   79.8   2.6   4.8e-26   1.2e-22       1      79 []     639     725 ..     639     725 .. 0.94

  Alignments for each domain:
  == domain 1  score: -7.4 bits;  conditional E-value: 7
          W2  71 eaeeeeee 78 
                 ea++++++
  CCE29863.1 505 EADSDDDD 512
                 89999998 PP

  == domain 2  score: 79.8 bits;  conditional E-value: 4.8e-26
          W2   1 eqvallgalerlcaekee.....llkllakilkaLYdeDileEeailkWgekkskaekg...kkkvrkkaepfvewLeeaeeeeeee 79 
                 eq ++++al+r +a+ ++     l++lla++l++LY +Dil+E++il+W+e++ +a++g   ++++r+k++ +vewLe+aeee++++
  CCE29863.1 639 EQADFILALQRALAHVKQpeqakLGTLLAAMLQQLYALDILDEDGILAWWEHEGDASSGgdsMAALREKCRVLVEWLENAEEEDDDD 725
                 699*********99988899999*****************************8777666788***********************98 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   2.2   5.9e-12   1.5e-08       1      36 []     348     382 ..     333     382 .. 0.97
   2 ?   -1.8   0.0       1.2   3.1e+03      25      34 ..     388     397 ..     387     399 .. 0.76
   3 !   13.4   0.1   1.9e-05     0.049       1      33 [.     405     437 ..     405     439 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 5.9e-12
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 +tvIG ++++g++++i +n++IG+++kIga+v+i g
  CCE29863.1 348 NTVIGRDTTVGSGSKI-SNCVIGKGCKIGANVTIEG 382
                 69**************.*****************76 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
                 TEEEETTEEE CS
     Hexapep  25 nvkIgagvvi 34 
                 +++I++g++i
  CCE29863.1 388 DSTIESGSRI 397
                 6788888887 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 1.9e-05
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvv 33 
                 s+ +G+++ I +++ i++ V +G+++ + +++ 
  CCE29863.1 405 SVSVGQDCSIQAGCLIAPRVNVGKGTELSENTI 437
                 5789*********************99988875 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   1.4   1.2e-07   0.00032     177     260 ..     335     414 ..     317     433 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.2e-07
     DUF4954 177 gekvkilnaglikNvkigdyatiegasklengtinSskeapveiGegViledfiissGskikdgavisrcfvGqavklkkqfsa 260
                 +++v+  +   ++N+ ig  +t+   sk++n+ i     +  +iG +V++e + i   s+i+ g+ i+++++G +v++++  s+
  CCE29863.1 335 EQNVSHAHDARLQNTVIGRDTTVGSGSKISNCVIG----KGCKIGANVTIEGSFIWGDSTIESGSRIVHSLIGDSVSVGQDCSI 414
                 45555555556666666666666666666666653....345566666666666666666666666666666666666665555 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   5.0   7.4e-06     0.019       2      32 ..     349     380 ..     348     381 .. 0.92
   2 !    7.6   0.2    0.0012       3.2      16      32 ..     402     420 ..     394     422 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.4e-06
                 EEE-TT-EE-TT-EES.EEE-TT-EE-TT-EE CS
   Hexapep_2   2 viIGdnCliGanagiG.vslGdncvvgaGvvi 32 
                 + IG ++ +G+ + i    +G++c++ga+v+i
  CCE29863.1 349 TVIGRDTTVGSGSKISnCVIGKGCKIGANVTI 380
                 79*************55*************99 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0012
                 ES..EEE-TT-EE-TT-EE CS
   Hexapep_2  16 iG..vslGdncvvgaGvvi 32 
                 iG  vs+G +c ++aG+ i
  CCE29863.1 402 IGdsVSVGQDCSIQAGCLI 420
                 7555************977 PP

>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.1e-06    0.0029      11     135 ..      39     165 ..      29     176 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.1e-06
                      GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT.......SEEEEEEESS--BGGHHHHHTHHHH CS
  NTP_transferase  11 tRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg.......vevlialepegkgtAdAvalaaell 97 
                       R+ P t +++  l+p +++ +li++tl+ la +g++e +++      + vee++++   +             +++  +   A +v  +++ l
       CCE29863.1  39 DRFTPFTIDRPRCLLPLANT-PLIEYTLEFLAMNGVNE-VYIYCGAFTQQVEEYISQSR-WAttsrscpF---SVVQFVRVSDARSVGDVLRDL 126
                      79******************.*****************.77777788899999999886.6533332111...233344446666666666666 PP

                      TTSSE...EEEEETTEEEESTTHHHHHHHHHTHSSTTSE CS
  NTP_transferase  98 edeks.delvlvLggDhlikdayeeavkkaiekaakgtv 135
                      + ++  d  +lv+ gD + +  +  +++ +++++++  +
       CCE29863.1 127 DSRSLvDGDFLVVHGDLVSNVMLDGILAAHRKRREASAA 165
                      655556778899999999888888888888888775444 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.3    0.0005       1.3     268     312 ..     338     382 ..     316     385 .. 0.76
   2 !   11.2   0.5   4.9e-05      0.13     273     336 ..     377     444 ..     375     455 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0005
  Fucokinase 268 ekkkesavvinSvlessvsvgegsviehsslkgnvsigsnsivsg 312
                  + ++ a   n+v+  + +vg gs i ++ ++++++ig+n  + g
  CCE29863.1 338 VSHAHDARLQNTVIGRDTTVGSGSKISNCVIGKGCKIGANVTIEG 382
                 233778888899999999999999999999999999999987765 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.9e-05
  Fucokinase 273 savvinSvlessvsvgegsviehsslkgnvsigsnsivs.glelessee...slelpddtilqtlslk 336
                 ++++  S++ ++ +++ gs i hs ++++vs+g+ + +  g+ ++   +     el ++til t+  k
  CCE29863.1 377 NVTIEGSFIWGDSTIESGSRIVHSLIGDSVSVGQDCSIQaGCLIAPRVNvgkGTELSENTILSTVTRK 444
                 56777889999999999999999999999999999877437777776668888888888888888765 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.1e-06     0.018      14      65 ..      48     101 ..      39     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.1e-06
                   TTHHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH..CHHHHHHTTCTS-EEE- CS
  NTP_transf_3  14 gdKallplggkpllervldalraagvdevvvvggd..eevlaalarlgvrvved 65 
                   ++ +llpl+++pl+e++l+ l+  gv+ev++ +g+  ++v++++ ++++ +++ 
    CCE29863.1  48 RPRCLLPLANTPLIEYTLEFLAMNGVNEVYIYCGAftQQVEEYISQSRWATTSR 101
                   6899*****************************998888999887776665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 5179.69
//
Query:       CCE29864.1  [L=611]
Description: uncharacterized protein CPUR_03712 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-76  255.7   0.0    4.9e-76  255.1   0.0    1.3  1  HAD_SAK_1  HAD domain family 1 in Swiss Army Knife RNA repair


Domain annotation for each model (and alignments):
>> HAD_SAK_1  HAD domain family 1 in Swiss Army Knife RNA repair proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.1   0.0   2.7e-80   4.9e-76       1     203 []      69     273 ..      69     273 .. 0.97

  Alignments for each domain:
  == domain 1  score: 255.1 bits;  conditional E-value: 2.7e-80
   HAD_SAK_1   1 SPlpnpqlwtkeligllqseevlknggWwsdpriLeesvkeslkaatgegv....erawegwWnekivelarlsikdkdtltvlLTGRkekkFselier 95 
                 SPlpnp+lw+++++gl++s+++++nggWw+d++iL         aatg+g+    +rawegwWnek+velarls+k++d+l+v+LTGR+ek+F++li++
  CCE29864.1  69 SPLPNPALWSAPTLGLMSSQKAFSNGGWWHDSQIL---------AATGQGLekeePRAWEGWWNEKVVELARLSMKQPDALCVMLTGRSEKPFAALIKK 158
                 9**********************************.........677777777779******************************************* PP

   HAD_SAK_1  96 ileskklkfdavvLkkkvepsseefesTmeFKqafledlletyksleeitiYedrpkhvkkfkefleklnkkkk.......pikaeviqvaelskyldp 187
                 +l++k+l+fd+v+Lk++v+p++e  +sTm+FKq fl+ l+ety++++ei+iYedrp+h+++f++f++++n  ++       p+ +eviqva+ s+ ldp
  CCE29864.1 159 MLAAKGLDFDIVGLKPQVTPTNEPLQSTMHFKQLFLTALMETYSQATEIRIYEDRPRHTTAFRKFFAEYNLCQNsaastrgPLATEVIQVADSSTVLDP 257
                 **********************************************************************998899*****99**************** PP

   HAD_SAK_1 188 ekEvklvqelinehnk 203
                 ++Ev+ +q++in+hn+
  CCE29864.1 258 VTEVAAIQHMINQHNE 273
                 ***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4342.52
//
Query:       CCE29865.1  [L=180]
Description: uncharacterized protein CPUR_03713 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-19   69.4   0.1    3.3e-19   68.8   0.1    1.3  1  DUF167    Uncharacterised ACR, YggU family COG1872


Domain annotation for each model (and alignments):
>> DUF167  Uncharacterised ACR, YggU family COG1872
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.1   1.9e-23   3.3e-19       2      73 ..      78     147 ..      77     151 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 1.9e-23
                 EEEEEES---SSS----...--TTTT-------TTIIIIIHHHHHHHHHHHHHS...SEEEE-S-GGGSEEE CS
      DUF167   2 vilavrvkPgakkdaigleedaegrealkvrvaappvdGkANkalikfLakalgvpksdveivsGeksreKv 73 
                 ++l++rvkPga+k++ g    a++++a++++vaa+p++G+AN a++++L+kalg+ +s+++iv+G+ksr+K+
  CCE29865.1  78 IQLQLRVKPGASKTRQG--ILAVTSNAVELCVAAQPRQGEANFAVLRVLSKALGICQSRLRIVRGSKSRDKI 147
                 689**************..777899**********************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1388.20
//
Query:       CCE29866.1  [L=336]
Description: uncharacterized protein CPUR_03714 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-08   34.8   0.0    2.3e-08   34.3   0.0    1.2  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase
    1.8e-05   25.2   1.0    0.00012   22.5   1.0    2.2  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   2.6e-12   2.3e-08       1     200 []      23     321 ..      23     321 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 2.6e-12
                  EEEEESHHHH.........................................TTTHHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCH.. CS
                  xxxxxxxxxx.........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Lipase_GDSL   1 ivafGDSltd.........................................Gdgaatlntiqlktpknlnefdlaldrianignkgasdnelqqll.. 55 
                  +v+fGDS td                                         G+  ++++ ++    +n+   dl        +  ++++  + q++  
   CCE29866.1  23 LVTFGDSYTDegrfsyfqqnhrapptgamlppsnatssggaswarfvanstGAQLYNYAVSGGMCSNNIDSRDLEAIHAPFPSVLEYQVPVFEQDIls 120
                  589********999999999999999777777777777755555555555544444444444444444444444444555555555555555555544 PP

                  .ECTTTECHHHHHCTTS..EEEEE--CTCC..-EECSSCTTTCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCH..............CTCC CS
                  .xxxxxxxxxxxxxxxx..xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxx RF
  Lipase_GDSL  56 .nkyplkseqlkalhpd..lviislGtNDs..nlgkkstdaakkeaeeyiknlreaikelkeegapkaivvlvsppglgp..............qeek 134
                   + yp+++       +d  ++ +++GtND+    +  ++++ +++ ++y +   +  ++++ +g ++++v++++p+  +p                + 
   CCE29866.1 121 rELYPRRR-------ADntVYALWIGTNDVgvYGFLGDKNKENTTLTSYLDCNWQVFDHIYHAGGRHFVVLNIAPLRHAPmyaspgeygprnsvYAHD 211
                  44455555.......6778***********6655555555667777777777777799************************************9999 PP

                  CCHCCHHHHHHHHHHHHHHHHHHHH..............HCTEEEECHHHHHHHT..HCCGCHCH................................T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxx..xxxxxxxx................................x RF
  Lipase_GDSL 135 dakklgekgnefvgeynqrlndlae..............kdgfavvDlydelqgl..sgieqlka................................D 184
                   a  ++ ++++ + ey + +n + e              ++++ v+D++  + +   +    ++                                 D
   CCE29866.1 212 PAAYVVPEVSHKLHEYVTSINTMFEygaafnlavkrrwpGATLSVFDVHTLMMDVlvE----PARyldepvnlkapyrvckdgcvdskdpktsfmwyD 305
                  999999999**************999999999999**************999999442....322555588888899999999999999999****** PP

                  SSSB-HHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxx RF
  Lipase_GDSL 185 glHpsekgyeklaell 200
                   lHpse+ + + a+++
   CCE29866.1 306 ELHPSERMHTIFAKHF 321
                  ************9986 PP

>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   1.0   1.3e-08   0.00012       2     150 ..      26     259 ..      25     316 .. 0.57

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.3e-08
                    EESHHHH.TCTTB..................CCHCHHCCCCCCCHHHTT-EEEEE.EEHCCH.-H........HHHHHHHHCTGGG-T........ CS
  Lipase_GDSL_2   2 lGDSiTa.Gygad..................gggrsypaylarllaarlgldvvnnlgvsGa.tt......allrllerlrdllrlkp........ 63 
                    +GDS+T+ G  +                   ++  +++++ ar +a+++g++ +n ++vsG   +      +l ++   ++++l+++         
     CCE29866.1  26 FGDSYTDeGRFSYfqqnhrapptgamlppsnATSSGGASW-ARFVANSTGAQLYN-YAVSGGmCSnnidsrDLEAIHAPFPSVLEYQVpvfeqdil 119
                    9******766666999**************9888888888.**************.9999997445555454444444444666666678888888 PP

                    ............SEEEEE--CCCCCTT--HHHHHHH...................................HHHHHHHHCCC...GEEE....... CS
  Lipase_GDSL_2  64 ............dlvtiliGtNDlgrgvpaaaaaand.................................nleelidalraaapgaril....... 107
                                 +  ++iGtND+g  +  ++  +++                                 +                         
     CCE29866.1 120 srelyprrradnTVYALWIGTNDVGVYGFLGDKNKENttltsyldcnwqvfdhiyhaggrhfvvlniaplR-----------------Hapmyasp 198
                    8888888888867778*******887777777666656445555554444444444444443333333331.................02222333 PP

                    ..................CEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-H CS
  Lipase_GDSL_2 108 ..................vlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDl 150
                                      v+++    +e+ ++ + + ++ aa+n a+++        ++D+
     CCE29866.1 199 geygprnsvyahdpaayvVPEVSHKLHEYVTSINTMFEYGAAFNLAVKRRWPGATLSVFDV 259
                    3333333222333333333444444444444444444445555555554444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2449.62
//
Query:       CCE29867.1  [L=200]
Description: uncharacterized protein CPUR_03715 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-37  127.9   0.1    3.5e-37  127.4   0.1    1.2  1  Phospholip_A2_3  Prokaryotic phospholipase A2
  ------ inclusion threshold ------
        0.1   12.8   2.4        5.4    7.4   0.3    2.5  2  TPR_2            Tetratricopeptide repeat
        0.2   12.0   1.5        1.6    9.1   0.7    2.3  2  TPR_8            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Phospholip_A2_3  Prokaryotic phospholipase A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   0.1   5.8e-41   3.5e-37       1     111 []      36     143 ..      36     143 .. 0.98

  Alignments for each domain:
  == domain 1  score: 127.4 bits;  conditional E-value: 5.8e-41
  Phospholip_A2_3   1 tdkllfstslkeFlkarnakaepseldwssdgCssspdkplgfeFlesCqrhdFgYrnykaqkrfteanrkridknfkkdlkkqCkkveklkkk 94 
                      td+llf+t+l+ F + r ++ +p++l+w sdgC+  p++p++++F ++CqrhdFg+ nykaq+r+t++nrk +dk+f +dl++qC++    ++k
       CCE29867.1  36 TDRLLFRTPLPVFENIRFQQ-NPPSLIWASDGCNGGPNNPFKYPFGPACQRHDFGFANYKAQHRLTRHNRKLLDKQFLRDLYYQCET--VRARK 126
                      89******************.******************************************************************..6669* PP

  Phospholip_A2_3  95 aCkaladvyyeavrafg 111
                       C++ladvyy++ r fg
       CCE29867.1 127 PCYRLADVYYRFGRWFG 143
                      ************99987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1    0.0059        35       4      17 ..     128     141 ..     125     144 .. 0.90
   2 ?    7.4   0.3   0.00091       5.4      17      31 ..     175     189 ..     174     192 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0059
       TPR_2   4 lynlGlayyklgdy 17 
                 +y+l+++yy+ g++
  CCE29867.1 128 CYRLADVYYRFGRW 141
                 8*********9987 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00091
       TPR_2  17 yeeAleafekAleld 31 
                 +eeA +a+ekA++ +
  CCE29867.1 175 FEEAMAAYEKAVSEA 189
                 89*********9876 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.11   6.5e+02       4      15 ..     128     139 ..     126     140 .. 0.78
   2 ?    9.1   0.7   0.00027       1.6      17      31 ..     175     189 ..     174     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
                 HHHHHHHHHHTT CS
       TPR_8   4 yynlgsiylklg 15 
                 +y+l+++y   g
  CCE29867.1 128 CYRLADVYYRFG 139
                 899999997766 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHHHHHH CS
       TPR_8  17 yeeAkeyyekaleld 31 
                 +eeA+++yeka++ +
  CCE29867.1 175 FEEAMAAYEKAVSEA 189
                 79*********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1488.99
//
Query:       CCE29868.1  [L=564]
Description: probable serine-type carboxypeptidase f precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-67  228.5   0.7      3e-67  227.9   0.7    1.2  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.9   0.7   1.7e-71     3e-67       8     415 ..      86     522 ..      80     525 .. 0.89

  Alignments for each domain:
  == domain 1  score: 227.9 bits;  conditional E-value: 1.7e-71
                    SSEEEEEEEECS..TTTTEEEEEEEEE-SS..GTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STTSTT CS
  Peptidase_S10   8 nfkqysGYldve..eeedkslFYwfvesek..npeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvGvGF 99 
                    + ++y+G l ++  ++e+++lF+wf+ s +  n +++++++W+nGGPGCsSl G+l+E+GPf+++  +t  +  np+sW++++n+++++qPv vG+
     CCE29868.1  86 AGESYAGLLPISdkKDEQNKLFFWFFPSDNeqNRKKKEITIWINGGPGCSSLLGFLQENGPFVWR-PGTLAPIANPWSWHHLTNMVWIEQPVTVGY 180
                    4689*****99844567899********997788899****************************.668*************************** PP

                    -EETTSSGS--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--SSTSEEEEEEEESE-SBHHHHHCCHHH... CS
  Peptidase_S10 100 SysntksdvktddeevaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekkkkinLkGlligNglideaeqvnsyve... 192
                       nt+ +   +++e a +++ f k+f+++f    + ++y +GESY+G y P+++++++++n+++    ++L+Gl++ +g+  + +   + ++   
     CCE29868.1 181 TTGNTTIH---NEDELAVQFLGFWKNFIKTFSMQGY-KIYFVGESYGGYYGPYISSHFVNANDTK---YYDLQGLMVVDGISFKDDLQSEVISesf 269
                    *****887...********************86555.9************************995...9***********9644433333333355 PP

                    ..HHHHTTSSHHHHHHHHHHHHEET.............................HHHHHHHHHHHHHHHHHHHHHHHHHCHCEETTETTSEETTSS CS
  Peptidase_S10 193 ..fayehgliseeeyeslkkacekk.............................eeleqesekcanllekaskvavekenkglnvynileeccklk 257
                      ++y+   +++++++++++  e+                              + ++q++  c +l +++ k+ +  +n ++n+yni  +c    
     CCE29868.1 270 veQNYNLMPFDDRTMDDIHNISETCgyreylkkyytyppsgpqpsvfpwvetlsNGTQQYKPGCGHLWDTIYKQ-ARLDNPCFNIYNIQDHC---- 360
                    5578888888888887776655444556*************************99999999********99987.666899***********.... PP

                    EEHHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT--TTSSS--SB-HHHHHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHH CS
  Peptidase_S10 258 aelkksstdaqggedpydesyvekylnkkeVrkalhvnasvkkweecndsvfeqleddisksveeileellesglrvliynGdvDlicnvlgteaw 353
                                    +d+   + y+++++V++a+h++  +++w  c d+ f  ++d++++++++ l+++++++ +v+  +G +D+i    g    
     CCE29868.1 361 -------------PKLFDPLGENPYFDRQDVKQAVHAP-LNHSWGLCVDTSF-VKRDESEPPYKYELPNVIDKTRNVIYVQGGTDFILAPSGVLLG 441
                    .............45677788899************97.569******9884.5689999*************8888888**************** PP

                    HHHTECTTECCSCCCEEEE...................TTTCESEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHHH CS
  Peptidase_S10 354 ikklelsgkkefrpwevsp...................kkengqvaGyvkeyenltfltvkgaGHmvPedkpeealqller 415
                    ++++++ g+ +f++  + p                    ++ + v+G +++ ++lt++    +GH+ P++ + +a++ le+
     CCE29868.1 442 VQNMTWGGQMGFQSRPTDPfyvprwgsgvlkgkfygseLPDRSGVVGTTHTERGLTVVVTGLSGHEGPQYASTAAFRQLEK 522
                    *****************99*****************998999999****************************99988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3951.36
//
Query:       CCE29869.1  [L=499]
Description: uncharacterized protein CPUR_03717 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-06   27.8   8.5    4.8e-06   26.6   8.5    1.7  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain
     0.0045   15.9   0.2        1.7    7.3   0.1    2.3  2  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   8.5   5.3e-10   4.8e-06       1      37 [.       9      45 ..       9      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 5.3e-10
                SS-HHHHHCT---ST.SSSS-HHHHHCTHHHCCCCTCC CS
     Zn_clus  1 haCdnCrkkKvKCda.kkPaCsnCkklnleCtfysess 37
                +aC  Cr+++  Cd+   + Cs+Ck++n  Ct y+++s
  CCE29869.1  9 TACLACRRRRLNCDRiPAG-CSQCKRKNIVCTGYRDPS 45
                69************86666.**************9987 PP

>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1   0.00019       1.7      99     143 ..     191     242 ..     177     254 .. 0.77
   2 !    6.4   0.0   0.00037       3.3     306     344 ..     437     474 ..     316     483 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00019
  Fungal_trans_2  99 Lllcsie..issgd..vsdwrvhLeaatsliksrggs...kasssslsskar 143
                     L+l ++e  +++g   + +w  h ++a  l++ rg++   ++ s+++ss+a+
      CCE29869.1 191 LVLGLFEaiVFKGGahPANWTAHTHGAMQLLRLRGPQqfkSRLSRTISSHAS 242
                     5667777756777756677******************777666666666655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00037
  Fungal_trans_2 306 pvaiasLlWplFiaGceavde.ddRdfvrrrleeleqsrl 344
                     pv  +sL+Wpl i+ c+  ++ + R+f r+ l+ l+ s+l
      CCE29869.1 437 PV-ARSLVWPLAIVECSDLSPqPARKFARQHLDMLA-SDL 474
                     34.79********987766667*************9.776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3460.53
//
Query:       CCE29870.1  [L=792]
Description: related to transcription factor BOM [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-79  265.2   0.0    6.2e-79  264.5   0.0    1.3  1  CP2       CP2 transcription factor
  ------ inclusion threshold ------
      0.061   14.0   0.7       0.19   12.4   0.7    1.9  1  AKNA      AT-hook-containing transcription factor
       0.11   12.6   1.2        0.2   11.8   1.2    1.3  1  ADIP      Afadin- and alpha -actinin-Binding


Domain annotation for each model (and alignments):
>> CP2  CP2 transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.5   0.0     1e-82   6.2e-79      13     230 .]     231     459 ..     223     459 .. 0.90

  Alignments for each domain:
  == domain 1  score: 264.5 bits;  conditional E-value: 1e-82
         CP2  13 kesasslaseeaavsssteksrfevtLeaptamikkvneepltYLNkGQaYsislkdlgaaklselkgkklksvvrvsFeeeklrskeakllklWkegr 111
                 ++++ss  + + ++++++e++rf+ tL+aptamik+++e+p++YLNkGQaYs+s++d+     ++++g+k++++vrvsFe++++r+k+  ++ lWkegr
  CCE29870.1 231 SQKDSSRMQMSHTLPPNAENFRFHSTLNAPTAMIKEAAEIPISYLNKGQAYSLSIVDTS----MHASGSKYRTFVRVSFEDDEQRQKPSVCWGLWKEGR 325
                 34445555566677779*****************************************9....67789******************************* PP

         CP2 112 gte..........aveivdvPlsggveeqkntqvelesssfnalsvtW....ngeeevkiavrvNclStdFsssKGvkGvPlrlqieTesidesskela 196
                 g +          ave+vd+  +    ++k+ ++elesssf++++vtW    ng +e ++avr+N+lStdFs+sKGvkG+P+rl+++T++++++ + + 
  CCE29870.1 326 GINeahqrggklqAVEYVDA-GQPAESDDKRPHIELESSSFDGFCVTWtpgaNGPPELSLAVRFNFLSTDFSHSKGVKGIPVRLCAKTSALSADGSLKD 423
                 *******************7.554457778889*****************9999***********************************9988765554 PP

         CP2 197 ..klevafCkvKvFkdkGAeRKlkndvakvkkriek 230
                    +ev++CkvK+F+d+GAeRKl+nd a+vkk+iek
  CCE29870.1 424 eaSTEVCYCKVKLFRDHGAERKLSNDIAHVKKTIEK 459
                 426******************************987 PP

>> AKNA  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.7   3.3e-05      0.19      41      80 ..     443     482 ..     438     500 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.3e-05
        AKNA  41 sreleaeIyqlgqrleeLkdqtdqlkqkveefskdiaqds 80 
                 +r+l   I + ++ +e+Lk q  q+ + ++ ++k+ +  s
  CCE29870.1 443 ERKLSNDIAHVKKTIEKLKQQLAQIESGTKDVGKRKRRSS 482
                 799*******************************987776 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.2   3.3e-05       0.2      62     109 ..     443     491 ..     439     501 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.3e-05
        ADIP  62 irkleaeierlqskierlktqleqlerela.lvqakerqlekklktleq 109
                  rkl+++i++ +++ie+lk+ql+q e+ ++ + ++k r+  +k+++ ++
  CCE29870.1 443 ERKLSNDIAHVKKTIEKLKQQLAQIESGTKdVGKRKRRSSVAKMTDCQR 491
                 5899**********************99886777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      766  (0.0427241); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.42
# Mc/sec: 5637.71
//
Query:       CCE29871.1  [L=602]
Description: related to mfs-multidrug-resistance transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-34  119.9  40.2    1.1e-34  119.9  40.2    1.7  2  MFS_1            Major Facilitator Superfamily
    4.1e-13   49.0   7.5    4.1e-13   49.0   7.5    1.7  2  Sugar_tr         Sugar (and other) transporter
  ------ inclusion threshold ------
       0.05   14.2   4.3        2.9    8.6   5.7    2.8  2  Sm_multidrug_ex  Putative small multi-drug export protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9  40.2   1.9e-38   1.1e-34       2     345 ..     124     491 ..     117     504 .. 0.78
   2 ?   -0.6   1.1      0.08   4.8e+02     131     170 ..     500     539 ..     481     583 .. 0.57

  Alignments for each domain:
  == domain 1  score: 119.9 bits;  conditional E-value: 1.9e-38
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 ++a++ ++l ++ ++++++  l+ ++g+s++ + l +t+y lg a++sl++++ls+ +Gr +v++++lll+a+ ++ + +a sl++++v+r++ +++++
  CCE29871.1 124 SFATWAATLYSTSYTSSMS-GLMAEFGASKTLVTLGMTTYLLGLAAGSLVVAPLSELYGRQKVYMVCLLLWAVLIVPCGLAKSLTTIIVVRFIGAFFGA 221
                 3344444444444777777.88****************************************************44444767777************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 ++++++   ++d+++++  +r ++l++++   G++ gp++gg++ ++lgWr++ +i+ i++ la+ l ++ ++e++ ++  ++++ +            
  CCE29871.1 222 VMISNAPGTVVDVSNPDYLARSLSLFAVAPLNGPVTGPIIGGFVFQYLGWRWANWIVLIIAGLAIAL-MMTVRETYAPKILQRKAARMrkqmddarywc 319
                 ****************************************************************884.3555566666666666555589999999999 PP

       MFS_1 189 ........kgtgpaplvpawkallkdpvlw..illialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdr...... 270
                         ++  + +l+ ++ ++++ p lw   ++i+++++  ++++ ++  p+ + +++g++ g  +++  + ++  +g   a++a  l +r      
  CCE29871.1 320 rydqkvstARLLKVNLSRPFVLFVTEPILWfmNFWISVVYG--ILYLCFIAYPVVFSQHRGWApG-ASSL--SFIGIGIGTLTAIVAEPLFRRiihaqp 413
                 98877555444444444489999999999996666666666..8899999999989*******84.4444..555555555556666666666666689 PP

       MFS_1 271 ....lgr......rrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntag 345
                     +g+        ++ ++ ++++++ lg+a++ ++  a+++++v + +G+ +g+ +++++ + s+++     + a+g++    
  CCE29871.1 414 mdptTGKpypeaqASIMAIGAISTAFGQLGFAWTCLP--ATIHWAVPIAFGIPFGCGNTISFIYGSNYL-----AGAYGIYAASA 491
                 7777333666655666666666666667777777777..88999999999**99999999999999999.....44666655443 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.08
       MFS_1 131 slGailgpllggllasslgWravfyilaivsllafvlfll 170
                 s+     pl+g+ ++s l+ +++  +l+++ + ++ + ++
  CCE29871.1 500 SIFGGTLPLAGPKMYSVLSPQWAGTVLGLLEVALIPIPFV 539
                 2333334555557777777888888888888777653222 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   7.5   6.8e-17   4.1e-13       9     198 ..      36     297 ..      30     404 .. 0.81
   2 ?   -3.7   0.4      0.67     4e+03     145     174 ..     457     488 ..     451     503 .. 0.72

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 6.8e-17
                 HHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH................................................................ CS
    Sugar_tr   9 gllfgYdtgvigafltllkfaknfglsksksskee................................................................ 43 
                 ++l g   g+ g+ l+ + ++  ++l++++++++e                                                                
  CCE29871.1  36 STLTGTSAGIEGPHLEPIRTVASHCLTSNVETDAErmarepvayistdtsiggiasrqpefevdfsdndpenplnwalwyrcwvifcvsfatwaatlys 134
                 556666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 PP

                 ...................HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  44 ................ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmy 126
                                 s++l++l +  +l+G ++Gsl++ +l++ +GR+k+++++ +l  + +v +++ak   s+  +iv R++  ++  +    +P +
  CCE29871.1 135 tsytssmsglmaefgaSKTLVTLGMTTYLLGLAAGSLVVAPLSELYGRQKVYMVCLLLWAVLIVPCGLAK---SLTTIIVVRFIGAFFGAVMISNAPGT 230
                 66666777777788889*****************************************************...9************************* PP

                 HHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 127 isEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                 +  ++ +++  +  sl+ +a   G + + i+g ++ ++ +   wr+  ++ l++a l ++l+++++E+  y 
  CCE29871.1 231 VVDVSNPDYLARSLSLFAVAPLNGPVTGPIIGGFVFQYLG---WRWANWIVLIIAGLAIALMMTVRET--YA 297
                 **********************************999988...************************9..33 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.67
                 HHHHHHHHHHHHHHHHHHTSS-..TTHHHHHH CS
    Sugar_tr 145 laitfGilvaaifglglnktsn..adgwrill 174
                 + i+fGi ++ + +  + + sn  a  + i  
  CCE29871.1 457 VPIAFGIPFGCGNTISFIYGSNylAGAYGIYA 488
                 67888888888888888887776655565554 PP

>> Sm_multidrug_ex  Putative small multi-drug export protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.7   0.00048       2.9      19     120 ..     185     289 ..     167     290 .. 0.70
   2 ?    0.7   0.0      0.13   7.8e+02      17      63 ..     521     569 ..     504     586 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00048
  Sm_multidrug_ex  19 allvsvlgn.llpvplillf.lrkllellkkkkllkklfekleekaek.kseki.e.kygflGLllFvaiPL..pgTGawtGsliasllglkkk 105
                      +++v++l   +l+vp  l   l +++     +++++ +f  +           + +  y + +L lF   PL  p+TG ++G ++   lg +  
       CCE29871.1 185 VYMVCLLLWaVLIVPCGLAKsLTTIIV----VRFIGAFFGAVMISNAPgTVVDVsNpDYLARSLSLFAVAPLngPVTGPIIGGFVFQYLGWRWA 274
                      566666666455555554223555555....4566666665544433323333344579999**********7788****************** PP

  Sm_multidrug_ex 106 kallaillGvliagl 120
                      + ++ i++G +ia +
       CCE29871.1 275 NWIVLIIAGLAIALM 289
                      ************975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.13
  Sm_multidrug_ex  17 llallvsvlgn.llpvplillflrklle.llkkkkllkklfekleekae 63 
                      +  +++ +l   l+p+p++++     ++   k+++ l+++ e l++k  
       CCE29871.1 521 WAGTVLGLLEVaLIPIPFVFWRYGGCIRaRSKTIRQLREYQEHLDAKRA 569
                      5666666666668999999988777777222222224444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       988  (0.0551063); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 4540.88
//
Query:       CCE29872.1  [L=696]
Description: related to eukaryotic translation initiation factor 3 subunit 9 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-76  255.7   0.0    6.3e-76  254.6   0.0    1.6  1  eIF2A     Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.021   15.7   0.5        3.8    8.5   0.0    3.7  3  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.6   0.0     7e-80   6.3e-76       1     194 []     217     411 ..     217     411 .. 0.99

  Alignments for each domain:
  == domain 1  score: 254.6 bits;  conditional E-value: 7e-80
                 EEESSECEEEEEE-TTTTEEEEEEE.E--TT-CEEEEEEEEEESSSTT--EEECCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEE CS
       eIF2A   1 ksffkadkvklkWnkkGtsllvlvstevdktnksyygetelyliklkkkksevvelkkegpihdvaWspkskefaviyGkmpakvslfdlkvkviskle 99 
                 k+ffk dkv++kWnk+G+sllvl++t+vd+++ksyyget+lyl+++++ ++ +v+l+kegpihdv+Wsp+s+ef v+yG+mpak+++f+ ++ +++++ 
  CCE29872.1 217 KTFFKGDKVQFKWNKRGSSLLVLAQTDVDRSGKSYYGETTLYLLSTNGAFDARVTLDKEGPIHDVSWSPNSREFGVVYGYMPAKATIFNDRAVAKHSFP 315
                 89************************************************************************************************* PP

                 EES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT.TTEEEEEEE-TT--EEEE-TTSSEEEEEE-TTT-SSS-EEEEEETTTEEEEEEE-TTEEEE CS
       eIF2A 100 eqkrNtiffspkgklvllaGfgnlaGeleiwdvk.kkkkiakaeaanatlvewspdgryvlTattaprlrvdngfkiwsysGklvykkefdelyqv 194
                   +rNti f p+ ++vl+aGfgnlaG+++i+d + +++k+ ++e+ n +++ewspd+ry+lTatt+prlrvdng+k+w++ G+++y++++ ely+v
  CCE29872.1 316 LGPRNTITFAPSARFVLVAGFGNLAGQIDIFDLEkDYRKVCTIESGNPSVCEWSPDSRYLLTATTSPRLRVDNGVKLWHVGGSIMYNEDMVELYNV 411
                 ********************************9999**********************************************************97 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.098   8.8e+02      13      37 ..      76     109 ..      57     110 .. 0.82
   2 ?    1.1   0.0     0.097   8.7e+02      12      23 ..     277     288 ..     268     292 .. 0.85
   3 ?    8.5   0.0   0.00043       3.8      16      37 ..     365     393 ..     350     394 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.098
                 EEEEEEETTSSEEEE.........EETTSEEEEE CS
        WD40  13 vtslafspdgawlas.........GsdDgtvriW 37 
                 v+ l fsp g+++++         G+  +++++W
  CCE29872.1  76 VYELGFSPCGTFVITwerpgkdeaGDATKNLKVW 109
                 556669******9998888888867668888888 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.097
                 SEEEEEEETTSS CS
        WD40  12 svtslafspdga 23 
                 +++++++sp+++
  CCE29872.1 277 PIHDVSWSPNSR 288
                 59*******985 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00043
                 EE.EETTSSEEEEEET......TSEEEEE CS
        WD40  16 la.fspdgawlasGsd......DgtvriW 37 
                 ++ +spd+++l++++       D+ v++W
  CCE29872.1 365 VCeWSPDSRYLLTATTsprlrvDNGVKLW 393
                 456********98853344556*****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.37
# Mc/sec: 5581.12
//
Query:       CCE29873.1  [L=423]
Description: related to Plasmodium yoelii rhoptry protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-26   92.8   0.1    1.8e-26   92.0   0.1    1.4  1  RPAP1_C   RPAP1-like, C-terminal
    7.3e-19   67.3   4.3    1.3e-18   66.5   4.3    1.4  1  RPAP1_N   RPAP1-like, N-terminal


Domain annotation for each model (and alignments):
>> RPAP1_C  RPAP1-like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.1     2e-30   1.8e-26       2      66 ..     291     357 ..     290     358 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 2e-30
     RPAP1_C   2 lRFdfdGdlvpl..adelethrgLhhHgdepalaGYTlkElfqLarSavpsQralalqtLgrilekl 66 
                 lRFdf+G+ +++  +++++ ++gLhhHg+ p++aGYT+ El +LarSavp+Qr++a qtLgril++l
  CCE29873.1 291 LRFDFRGRFLSPrvSRSIPSTKGLHHHGEAPEAAGYTIAELSRLARSAVPAQRCIAYQTLGRILYRL 357
                 8**********9999*************************************************997 PP

>> RPAP1_N  RPAP1-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   4.3   1.4e-22   1.3e-18       2      46 .]      85     129 ..      84     129 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 1.4e-22
     RPAP1_N   2 rIdeENrarLasMspeEIeeereeLlesLdPkllefLlkRankke 46 
                 rIdeEN+++LasMspeEI++++ ++++ L+P l+++Ll+Ran++e
  CCE29873.1  85 RIDEENKRKLASMSPEEIAQAQDDIMNGLNPTLIQRLLQRANIDE 129
                 8*****************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3263.15
//
Query:       CCE29874.1  [L=629]
Description: uncharacterized protein CPUR_03722 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-08   33.6   0.4    6.1e-08   32.5   0.4    1.5  1  HUN              HPC2 and ubinuclein domain
  ------ inclusion threshold ------
        2.5    8.7  16.7         16    6.1  16.7    2.4  1  FoP_duplication  C-terminal duplication domain of Friend of P


Domain annotation for each model (and alignments):
>> HUN  HPC2 and ubinuclein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.4   6.9e-12   6.1e-08       5      51 ..     484     525 ..     481     526 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 6.9e-12
         HUN   5 rdddgddtgsgYDieDpFIDDsElydelvpdilktktgGFYvnqgel 51 
                 ++ +   ++++YD+eD+F+DDsE+  e +   +   ++GF+v++g l
  CCE29874.1 484 KKRN--FKEDQYDVEDDFVDDSEMLWEAQ---AAASRDGFFVYSGPL 525
                 3333..36788****************99...667789******976 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  16.7    0.0018        16       7      53 ..     539     590 ..     534     594 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0018
  FoP_duplication   7 arrggggrggrrgrgrggrgg...rggrgrgrggrgg..rkkkkpltkeeLD 53 
                      ++rg+g+rggr+grg+++ +g    +g+g+g g rgg  ++k++   +e L 
       CCE29874.1 539 PKRGRGSRGGRGGRGGAAARGgatARGGGGGPGSRGGsvTRKPRVTKAERLQ 590
                      5555556665555555544443555666666666666655777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4626.91
//
Query:       CCE29875.1  [L=641]
Description: probable Arf-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-45  153.2   0.0    1.4e-44  151.4   0.0    1.9  2  VHS              VHS domain
    6.5e-20   71.2   0.6    4.2e-19   68.6   0.1    2.6  3  GAT              GAT domain
    9.6e-19   67.7   0.0    3.8e-18   65.8   0.0    2.0  2  Alpha_adaptinC2  Adaptin C-terminal domain
    1.1e-07   31.4   0.1    3.8e-07   29.6   0.1    2.0  1  GGA_N-GAT        GGA N-GAT domain
  ------ inclusion threshold ------
        0.2   11.6   0.0        1.3    8.9   0.0    2.3  2  DUF4322          Domain of unknown function (DUF4322)


Domain annotation for each model (and alignments):
>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4   0.0   3.9e-48   1.4e-44       5     141 .]      22     163 ..      19     163 .. 0.98
   2 ?   -2.0   0.0      0.84     3e+03       8      37 ..     282     312 ..     277     317 .. 0.75

  Alignments for each domain:
  == domain 1  score: 151.4 bits;  conditional E-value: 3.9e-48
                 HHHHHHHHHHT-TT-SS--HHHHHHHHHHHHCS.TCHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTTTCH CS
         VHS   5 sslekliekATdeslreedlslileicDlinek.eagpkeavrlikkkinsknphvallaLklldalvkNcGskfhleiaskeflnelvklilekknsk 102
                 s+l++ i+ A+++ + e++l+l lei+Dlin+k +  p+ea+ +i   in++np+vallaL lld++vkNcG++fhl+i++keflnelv++++e+++ +
  CCE29875.1  22 SQLQRFIQGACSPENYEPNLALCLEIADLINSKkGSAPREAATMIVSYINHRNPNVALLALGLLDICVKNCGYPFHLQISTKEFLNELVRRFPERPPLR 120
                 6699*****************************9***************************************************************** PP

                 CS.HHHHHHHHHHHHHHHT....TT-TTGHHHHHHHHHHHHTT CS
         VHS 103 lakvkkkvlelleeWadaf....knkpelkkisdvykllkrkg 141
                 +++v++k+le++eeW++++    ++k++l  i+d+++ll++kg
  CCE29875.1 121 ETRVQTKILEAIEEWRVTIcdtsRYKDDLGFIRDMHRLLSYKG 163
                 ****************************************997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.84
                 HHHHHHHT-TT-SS-.-HHHHHHHHHHHHCS CS
         VHS   8 ekliekATdeslree.dlslileicDlinek 37 
                 + +i+k ++e  ++    +  lei D i  +
  CCE29875.1 282 QPKIQKMCEEESEDHeAVARLLEINDSIHRT 312
                 5689999998877763678889999999876 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.1   3.8e+03      28      65 ..      16      52 ..       6      53 .. 0.73
   2 ?   -2.1   0.1       1.4   5.1e+03      31      46 ..     191     207 ..     177     219 .. 0.58
   3 !   68.6   0.1   1.2e-22   4.2e-19       1      77 []     246     322 ..     246     322 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.1
         GAT 28 eLyetckamqpriqklieetadeedllaelLqlNDeLn 65
                e+ ++  ++q+ iq  ++  + e   la +L++ D +n
  CCE29875.1 16 EFGRAPSQLQRFIQGACSPENYEP-NLALCLEIADLIN 52
                566666677777777777744455.8999999999988 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
         GAT  31 etckamq.priqkliee 46 
                 e+ +++q  ++q+li +
  CCE29875.1 191 EEEREAQsAKLQELIRR 207
                 33344431366676666 PP

  == domain 3  score: 68.6 bits;  conditional E-value: 1.2e-22
         GAT   1 rnnaklLsemLsstepdeellenellkeLyetckamqpriqklieetadeedllaelLqlNDeLnnvlerYerlkkg 77 
                 + +a+lL+e L++++p++++++++++ eL+ +++++qp+iqk++ee +++++++a+lL++ND++++++erY+ +kkg
  CCE29875.1 246 QAKARLLEERLEAFKPGDSMSDGDVFSELAAALQSAQPKIQKMCEEESEDHEAVARLLEINDSIHRTVERYKLMKKG 322
                 579************999*****************************99999**********************997 PP

>> Alpha_adaptinC2  Adaptin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.1   4.1e+03      57      78 ..     510     531 ..     498     534 .. 0.76
   2 !   65.8   0.0   1.1e-21   3.8e-18      21     108 ..     542     636 ..     525     639 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.1
                      EEEES-S-B-TTCEEEEEEEEE CS
  Alpha_adaptinC2  57 lqppsstvlppnpggqitqvll 78 
                        pp  ++ p +++g+i+q+ll
       CCE29875.1 510 ALPPAASNKPKEHKGTINQSLL 531
                      45666666676789****9985 PP

  == domain 2  score: 65.8 bits;  conditional E-value: 1.1e-21
                      TSTTEEEEEEEEEE-SSS-EEEEEEEEEEBTTCEEEEEEES-S-B-TTCEEEEEEEEEEES.....CTTS-EEEEEEEEEE.CTC.EEEEEEEE CS
  Alpha_adaptinC2  21 erpgqiritlsftNkssqpisnfsfqaavpkslklqlqppsstvlppnpggqitqvllien.....pskkplrmrlrisyk.vgq.aikeqidv 107
                      + ++ i+it  f+N+s qp+++++fq+av+k+++lql+p+++++l+p+++  itq++ +       ++ +++++r+r +yk +g+ + +e +++
       CCE29875.1 542 GASNSIHITFAFSNNSAQPVTELHFQLAVTKGYELQLKPQTGRDLAPKQSRGITQQVDVWHagsrtQKVESVKLRWRATYKvGGTeQKAETGEI 635
                      56789******************************************************666799999*************5555666666665 PP

                      E CS
  Alpha_adaptinC2 108 l 108
                       
       CCE29875.1 636 P 636
                      5 PP

>> GGA_N-GAT  GGA N-GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1   1.1e-10   3.8e-07       2      33 ..     193     224 ..     193     228 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.1e-10
   GGA_N-GAT   2 edeeksklLarLLkSknpeDLqaANrLIKsmV 33 
                 e+e +s +L++L++ + peDL++ANrL K m 
  CCE29875.1 193 EREAQSAKLQELIRRGSPEDLREANRLMKIMA 224
                 6899*************************996 PP

>> DUF4322  Domain of unknown function (DUF4322)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00037       1.3      15      48 ..     225     258 ..     211     271 .. 0.82
   2 ?   -1.6   0.0      0.74   2.7e+03      19      32 ..     350     363 ..     348     370 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00037
     DUF4322  15 GykLLsmldfkGkkaeevakvLvsaaLlndsien 48 
                 Gy   s  d++ k ae+v+k+   a Ll + +e 
  CCE29875.1 225 GYDTRSKTDYRAKAAEDVSKIQAKARLLEERLEA 258
                 999999**********************999886 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.74
     DUF4322  19 LsmldfkGkkaeev 32 
                 Ls++df G+   + 
  CCE29875.1 350 LSLIDFDGEGGHDA 363
                 8******9876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       965  (0.0538234); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4253.49
//
Query:       CCE29876.1  [L=435]
Description: uncharacterized protein CPUR_03724 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-51  171.4   0.0    8.5e-51  171.0   0.0    1.2  1  Ribo_biogen_C  Ribosome biogenesis protein, C-terminal
    4.5e-12   45.6   0.9    9.6e-12   44.5   0.9    1.6  1  RLI            Possible Fer4-like domain in RNase L inhibitor


Domain annotation for each model (and alignments):
>> Ribo_biogen_C  Ribosome biogenesis protein, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.0   0.0   9.5e-55   8.5e-51       1     127 []      84     210 ..      84     210 .. 0.99

  Alignments for each domain:
  == domain 1  score: 171.0 bits;  conditional E-value: 9.5e-55
                    EEE-TT-SSB--GGGHHHHHHT-EEEE---TTT--GGGTTT-E....EB--S-B--STTTTT-BS---HHHHHHHHHHHTT-HHHHHHHHTSSTTH CS
  Ribo_biogen_C   1 ivlspkakkvlspaDreiveksgiavvdcsWarleevkfkklkakeerlLPyLvAaNpvnYgkplkLscvEAlaaalyilglkeeaeellskfkwg 96 
                    ++++p++++v+spaDre+++++g avv+csWar++ev+++k+ +k+erlLPyLvAaN+vnYgkp++L+cvEAlaaa+yi+g+ ++ae++l+ f++g
     CCE29876.1  84 VIITPNGRQVVSPADRELMDQYGAAVVECSWARTQEVQWSKVGGKCERLLPYLVAANTVNYGKPWRLNCVEALAAAFYICGHADWAEQILEPFSYG 179
                    799********************************************************************************************* PP

                    HHHHHHCHHHHHHH.TT--HHHHHHHHHHHH CS
  Ribo_biogen_C  97 eeFlelnkelleeYakckdseevvevqkeyl 127
                    e+Fle+n+++l++Ya+c+d++ v+++++e++
     CCE29876.1 180 ESFLEINSRILKRYAACEDAAGVKKTEAEWM 210
                    ***************************9986 PP

>> RLI  Possible Fer4-like domain in RNase L inhibitor, RLI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.9   1.1e-15   9.6e-12       2      35 .]      47      80 ..      46      80 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 1.1e-15
                -EEEES---------TTHHHHHTTSEEEESS--S CS
         RLI  2 rlAivdadqCdPKKCtgkkcarfcpvrlvrtgkk 35
                + A++d ++CdPK+C+gkk++r++++r +++g++
  CCE29876.1 47 KAACWDLGHCDPKRCSGKKLMRLGLMRDLHMGQR 80
                679****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 2988.92
//
Query:       CCE29877.1  [L=1028]
Description: related to translation initiation factor IF-2,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-33  113.8   6.5    2.1e-31  109.0   6.5    2.4  1  GTP_EFTU       Elongation factor Tu GTP binding domain
    2.7e-26   91.7   1.8    1.1e-25   89.8   1.8    2.1  1  IF-2           Translation-initiation factor 2
    1.7e-10   41.0   0.8    4.3e-10   39.7   0.2    2.1  2  MMR_HSR1       50S ribosome-binding GTPase
      6e-05   23.0   3.0     0.0019   18.1   0.2    2.7  2  RsgA_GTPase    RsgA GTPase
    6.2e-05   22.5   0.3    0.00021   20.8   0.3    1.9  1  SRPRB          Signal recognition particle receptor beta subu
    8.5e-05   22.1   0.1    0.00016   21.2   0.1    1.4  1  Arf            ADP-ribosylation factor family
     0.0002   21.1   0.0    0.00053   19.7   0.0    1.8  1  IF2_N          Translation initiation factor IF-2, N-terminal
     0.0005   19.8   0.5     0.0016   18.2   0.5    1.9  1  PduV-EutP      Ethanolamine utilisation - propanediol utilisa
     0.0012   18.3   0.3     0.0036   16.8   0.3    1.8  1  FeoB_N         Ferrous iron transport protein B
     0.0015   18.7   0.0      0.004   17.4   0.0    1.8  1  Roc            Ras of Complex, Roc, domain of DAPkinase
     0.0045   17.3   1.1        5.5    7.5   0.6    3.0  2  GTP_EFTU_D2    Elongation factor Tu domain 2
     0.0065   16.1   0.2      0.014   15.0   0.2    1.5  1  Ras            Ras family


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   6.5   1.4e-34   2.1e-31       7     191 ..     510     667 ..     507     670 .. 0.92

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 1.4e-34
                 EEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTT CS
    GTP_EFTU   7 giighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdave 105
                 +i+ghvDhGKtTL+d L +++ a                  + +  giT ++ a  ++  ++ ++i+++DtPGH+ F +   rg+ v+D++vlvv+a++
  CCE29877.1 510 TIMGHVDHGKTTLLDYLRKSSVA------------------AQEHGGITQHIGAFVVS-MSTGKQITFLDTPGHAAFLSMRQRGAHVTDIVVLVVAADD 589
                 69***************944443..................33467********9999.899************************************* PP

                 BSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHH CS
    GTP_EFTU 106 GvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvel 191
                  v+pqt e +++a + +vpiiv+iNK+D+  a+++++++++ ++       +e   + g  ev+vv++S+++g+g+ +l e +++l
  CCE29877.1 590 SVKPQTVEAIKHATAAKVPIIVAINKIDKETARVEQVKSDLARHG------VEIEDYGG--EVQVVCVSGKTGQGMADLEESIITL 667
                 ******************************************998......77777777..59****************9999876 PP

>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   1.8   7.1e-29   1.1e-25      14     105 .]     823     914 ..     810     914 .. 0.94

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 7.1e-29
                 CCEEEEEESSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HHHHHHHHHSTEEEEEESSSCTHHHHHCCCCCTSEEEEESSHHHHHHHHH CS
        IF-2  14 elnviikaDvqGsleAlkeaLekleseevkvkvihsgvGaitesDvelasasnaiiigFnvkvskkakklaekegvkirlynvIYkliddvk 105
                   n+ +kaDv Gs+eA+  ++ +++++ev+ k+++s+ G++tesD+++a++sn++i+ Fn+ + +++k+ ae+ +v+i+ +nvIY+++dd+k
  CCE29877.1 823 VQNFTVKADVVGSVEAVCGSILEVGNHEVQPKILRSAAGHVTESDIDHAAVSNSVIVNFNLPIAPHVKRRAEDAKVTIIDHNVIYHVVDDIK 914
                 56899*************************************************************************************97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.2   2.9e-13   4.3e-10       3     114 .]     510     615 ..     508     615 .. 0.82
   2 ?   -2.9   0.0       4.8   7.1e+03      67      86 ..     894     912 ..     885     928 .. 0.65

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 2.9e-13
                 EEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg.keielvDtpGliegaseek.glgkaflaleeadlillvvdaseeklkpldeelee 99 
                  i+G+   GK+tL+  l ++ + ++++ g T++i  + v+++  k+i+++DtpG  +       ++++   a+  +d+++lvv a  +++kp+  e  +
  CCE29877.1 510 TIMGHVDHGKTTLLDYLRKSSVAAQEHGGITQHIGAFVVSMSTgKQITFLDTPG--H---AAFlSMRQ-RGAHV-TDIVVLVVAAD-DSVKPQTVEAIK 600
                 699*******************************99999965559*********..3...12212333.23333.59999999876.779999999999 PP

                 HHHHTTSEEEEEEES CS
    MMR_HSR1 100 lleeakkplilvlnk 114
                   + ak p+i+++nk
  CCE29877.1 601 HATAAKVPIIVAINK 615
                 9888*********98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.8
                 HHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  67 gkaflaleeadlillvvdas 86 
                 ++a   +++ ++i +vvd  
  CCE29877.1 894 EDAKVTIIDHNVIYHVVD-D 912
                 445555667788888888.2 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2     0.017        26     101     160 ..     508     563 ..     497     568 .. 0.72
   2 !   18.1   0.2   1.3e-06    0.0019      10      97 ..     571     664 ..     564     671 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.017
                  EEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-S CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPG 160
                  +++++G+   GK+tL++ l+ +      + +e+ g  +h    v  ++  ++ +  DtPG
   CCE29877.1 508 VATIMGHVDHGKTTLLDYLRKSSV----AAQEHGGITQHIGAFVVSMSTGKQITFLDTPG 563
                  6789***************99832....22344455566666777777776777777777 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.3e-06
                  TTTEES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH.....HHHHHHHHHHHTT..SEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  10 rpkvaNvdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeee.....eleelkeelealg..yevllvsaktkegleelkell 97 
                  r++ a v+ ++++v ++++++++++++ ++ +a ++++++++++nKiD  + +      +l +   e+e++g  ++v++vs kt++g+++l+e +
   CCE29877.1 571 RQRGAHVTDIVVLVVAADDSVKPQTVE-AIKHATAAKVPIIVAINKIDKETARVeqvksDLARHGVEIEDYGgeVQVVCVSGKTGQGMADLEESI 664
                  6667888887777777779*****998.6899****************98876655656555555555655544788999999999999998865 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.3   1.4e-07   0.00021       6     132 ..     509     626 ..     504     633 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.4e-07
                 EEEE-STTSSHHHHHHHHHHSS---B---S.S-EE.ETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHHH CS
       SRPRB   6 vllvGlsdsGKTslftrLttdsvkktvtSq.essa.alkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyei 102
                   ++G  d GKT+l+  L + sv         +++ a  v+ + g+++t++D PGh  + + + ++  + + +  lv   D +++p+ v+         
  CCE29877.1 509 ATIMGHVDHGKTTLLDYLRKSSVAAQEHGGiTQHIgAFVVSMSTGKQITFLDTPGHAAFLS-MRQRGAHVTDIVVLVVAADDSVKPQTVEA-------- 598
                 5699**************99966554443323333133446699*************9854.66666777888888888899999987764........ PP

                 HHHHHHHTT---EEEEEE-TTSTT---HHH CS
       SRPRB 103 lliteklkdavdiliACnKqelflakspkl 132
                   i+  +  +v+i++A nK +  +a+ +++
  CCE29877.1 599 --IKHATAAKVPIIVAINKIDKETARVEQV 626
                 ..334445889*************998764 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.1e-07   0.00016      20     169 ..     512     662 ..     508     668 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.1e-07
                 EESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEE.TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCT CS
         Arf  20 lGLDnaGKtTilkklkleelvt...tvPTigfnveelei.knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelk 114
                 +G    GKtT+l  l++ +++       T++     +++  + ++t+ D  G+    ++ ++  + td v+ vv + d+      k +  + +++ + +
  CCE29877.1 512 MGHVDHGKTTLLDYLRKSSVAAqehGGITQHIGAFVVSMsTGKQITFLDTPGHAAFLSMRQRGAHVTDIVVLVVAADDSV-----KPQTVEAIKHATAA 605
                 566667*********999887633323466655555555245679999************************99988865.....55556679999*** PP

                 TSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS...SSSSEEEEEEBTTTTBTHHHHHH CS
         Arf 115 evallvlaNKqDlpealseeelrellgleelk...gkrkleiqkcsavkgeglkegle 169
                 +v+++v  NK+D ++a   e++++ l+ + ++      +++++ +s  +g+g+ +  e
  CCE29877.1 606 KVPIIVAINKIDKETA-RVEQVKSDLARHGVEiedYGGEVQVVCVSGKTGQGMADLEE 662
                 ************8876.56789999999998754555678888888899999887655 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.6e-07   0.00053       8      54 .]     434     479 ..     427     479 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.6e-07
       IF2_N   8 eLAkeLgvkskevikkLfkelGievkshsssLDeetaeliaeefgik 54 
                 +LA+ L+ ++ + ++ + +e+G+e ++ + +L+ eta+l+  e+g++
  CCE29877.1 434 NLAQALQQRPDQFLRDM-EEMGFENVTTDTILTGETAALVSMEYGFE 479
                 79***************.77************************986 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.5   1.1e-06    0.0016       6     121 ..     511     636 ..     508     664 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.1e-06
   PduV-EutP   6 liGkvgsGKttLtqalkgeelkYkk....tqaief.....s..d..eviDtPGeylenrklysalivtsaeadvialvqdate...eesvfppgfasvf 88 
                 ++G+v+ GKttL   l++ ++  +     tq i       s  +  +++DtPG       + s  +  ++ +d+++lv++a++   +++v + + a+  
  CCE29877.1 511 IMGHVDHGKTTLLDYLRKSSVAAQEhggiTQHIGAfvvsmStgKqiTFLDTPGH----AAFLSMRQRGAHVTDIVVLVVAADDsvkPQTVEAIKHATAA 605
                 79****************887766444448876431111121121145899995....45666667778888999999887651115556667777888 PP

   PduV-EutP  89 nkeviGiitkidlaedeenieaveelLksaGae 121
                 + ++i  i kid+   ++++e+v++ L   G+e
  CCE29877.1 606 KVPIIVAINKIDKE--TARVEQVKSDLARHGVE 636
                 88999999999998..9***********99986 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   2.4e-06    0.0036       4     155 ..     510     663 ..     508     664 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.4e-06
                 EEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT.EEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHHHHHHH CS
      FeoB_N   4 alvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg.keveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnlernLyLtlql 101
                 +++G  + Gkttl++ l +++     + G+t       +++++ k+++++D PG  ++ ++ +    ++d+++     +vv  +d +   +++  +   
  CCE29877.1 510 TIMGHVDHGKTTLLDYLRKSSVAAQEHGGITQHIGAFVVSMSTgKQITFLDTPGHAAFLSMRQRGAHVTDIVV-----LVVA-ADDSVKPQTVEAIKHA 602
                 5789999************************9999998888766**********9998777666655555553.....3343.4444445678888899 PP

                 HHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT.......S-EEEEBTTTTBTHHHHHHH CS
      FeoB_N 102 lelgvpvvlalnmideaekkgieidlkkLsekLg.......vpvvktsakkkegieellka 155
                 +  +vp+++a+n+id+ +++  ++  +  ++ ++       v+vv +s+k+++g+ +l ++
  CCE29877.1 603 TAAKVPIIVAINKIDKETARVEQVKSDLARHGVEiedyggeVQVVCVSGKTGQGMADLEES 663
                 999************8776655554444333332112223488999999999999998876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.7e-06     0.004       4     120 .]     511     618 ..     509     618 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.7e-06
                 EESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHHHH CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWlkel 102
                 ++G    GKt+ll+ + ++++  +e+  i   +    ++ ++ +   ++ k  ++ + Dt G+  f s+++   +  ++++lv+ +++s    + ++ +
  CCE29877.1 511 IMGHVDHGKTTLLDYLRKSSVAAQEHGGITQHIGA--FV-VS-M---STGK--QITFLDTPGHAAFLSMRQRGAHVTDIVVLVVAADDSV-KPQTVEAI 599
                 789999***********999988876554444433..31.22.2...2234..57789*************9999999999998764443.34567777 PP

                 HHH.CSSS-EEEEEE-TTT CS
         Roc 103 kkv.agkspvilvgnkiDl 120
                 k+  a k p+i+ +nkiD+
  CCE29877.1 600 KHAtAAKVPIIVAINKIDK 618
                 76525678999999***95 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0057       8.4       1      24 [.     694     715 ..     694     748 .. 0.77
   2 !    7.5   0.6    0.0037       5.5       3      50 ..     951     996 ..     950    1008 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0057
                  EEEEEEEEEESEEETTEEEEEECT CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgn 24 
                  G+ a++ v +Gtl++Gd ++    
   CCE29877.1 694 GRSATALVKRGTLRPGDIIVA--G 715
                  5668999************98..3 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0037
                  EEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEET CS
  GTP_EFTU_D2   3 valgrvysGtlkkGdevrilgndtskkeivtrissletfhededeava 50 
                  va++rv +Gt+kk   v++   +++k   +++i  l   ++d+  + +
   CCE29877.1 951 VAGCRVRNGTIKKSSLVKV--IRKGKVVFQGTIDTLKQVKKDVLDVGK 996
                  89*****************..666566688999999988888766655 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   9.2e-06     0.014       4     123 ..     511     627 ..     509     667 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.2e-06
                 EEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST CS
         Ras   4 lvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvae 102
                 ++G    GKt+ll    k++   + +  i  +   + +   ++  +++ +DT G   f s+r+   + ++ ++lv  +   +s +   + ve ik+ + 
  CCE29877.1 511 IMGHVDHGKTTLLDYLRKSSVAAQEHGGI-TQHIGAFVVSMSTGKQITFLDTPGHAAFLSMRQRGAHVTDIVVLV--VAADDSVK--PQTVEAIKHATA 604
                 7899999*****99888888888888888.5555555555577778899**************999999998888..55555544..378899999999 PP

                 TTSEEEEEEETTTGGG..G-SS- CS
         Ras 103 envpivLvGnKvDlee..kravs 123
                  +vpi++  nK+D e+   ++v+
  CCE29877.1 605 AKVPIIVAINKIDKETarVEQVK 627
                 99***********9983322333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1691  (0.0943165); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.46
# Mc/sec: 6651.94
//
Query:       CCE29878.1  [L=341]
Description: uncharacterized protein CPUR_03726 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2522.65
//
Query:       CCE29879.1  [L=351]
Description: uncharacterized protein CPUR_03727 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-69  232.0   0.1    8.5e-69  231.7   0.1    1.1  1  GPP34     Golgi phosphoprotein 3 (GPP34)


Domain annotation for each model (and alignments):
>> GPP34  Golgi phosphoprotein 3 (GPP34)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.7   0.1   4.7e-73   8.5e-69       2     191 ..      77     301 ..      76     332 .. 0.94

  Alignments for each domain:
  == domain 1  score: 231.7 bits;  conditional E-value: 4.7e-73
       GPP34   2 aeellLLalddekgrlsfandnlsyaLaGAiLiELalrgriavdk........eggrvv.vidsrptgdplldealklikaserprsvktwvdlls... 88 
                 +ee+lLL+l+d++g+lsf+ndn+syaL+G+i++ELa rgri ++k         ++r + vid++ tg++lldealk++k+se+ +sv++w+dl+s   
  CCE29879.1  77 MEEVLLLGLKDKQGYLSFWNDNISYALRGCIVLELAFRGRISMEKdpsrrrfsPADRNIeVIDDTLTGEVLLDEALKMMKQSEK-MSVSSWIDLMSget 174
                 9****************************************************6666666********************8877.************** PP

       GPP34  89 ..........ksvrervakgLvdkGilrtekrrflglfdmtthpvadtaakeavrrrvraaltsgepadp..............rtaaLvallaaagll 163
                           k+vrer+akgLvdkGilrtekr+fl lfdm+thpvad  ake++rrrvr++lt+++   p              rt+++v+ ++aa++l
  CCE29879.1 175 wnlmkigyqlKQVRERLAKGLVDKGILRTEKRNFL-LFDMATHPVADGGAKEELRRRVRNVLTQRTVVLPgnqflpenlefrnlRTVCMVCAAYAANVL 272
                 ***********************************.******************************99777899999********************** PP

       GPP34 164 enllpdl..eareaa.arakelleefaegel 191
                 en+l++l  eare a a+ +ell+++++  +
  CCE29879.1 273 ENALSSLghEARERAfAQTDELLADYSQ--W 301
                 ************************9999..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2699.90
//
Query:       CCE29880.1  [L=555]
Description: uncharacterized protein CPUR_03728 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-42  145.9  45.9    1.3e-42  145.9  45.9    5.0  3  SURF6     Surfeit locus protein 6
    3.5e-16   59.6   0.3    3.5e-16   59.6   0.3    8.2  8  RRP14     60S ribosome biogenesis protein Rrp14


Domain annotation for each model (and alignments):
>> SURF6  Surfeit locus protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -23.1  42.0         2   1.8e+04      28     123 ..      61     177 ..      32     179 .. 0.33
   2 ?  -20.9  53.3         2   1.8e+04       4      79 ..     160     250 ..     148     338 .. 0.59
   3 !  145.9  45.9   1.4e-46   1.3e-42       1     197 [.     339     529 ..     339     541 .. 0.93

  Alignments for each domain:
  == domain 1  score: -23.1 bits;  conditional E-value: 2
       SURF6  28 eeeekaeekkakeeaeakkskkkkkkkkeas..kkee.....dlvFskldf.edg......aekkskkkkkkkkkk............gptkkdpkqaL 100
                 e +++a+e  +++++++ k  + ++++++++  +  +     d ++ +++  e +      ++k+++++kk+   k            + t +d+ ++ 
  CCE29880.1  61 EMNRNAKEVMDERAQHKRKLRELEEQENAENdgD--DddnvsDDSYEAMEGvEPErpgdglKKKTEDSNKKQ---KlmteevdqtevpPETAEDTVKLS 154
                 3333333333333333332222222222222221..122233445555554222233332222222222222...122222333333233333333333 PP

       SURF6 101 kkleakkakleelkeekrkeiee 123
                 kk  +++ak e+ +e+k+++  e
  CCE29880.1 155 KKEAKREAKREKKNEKKAEKRTE 177
                 33333333333333333333333 PP

  == domain 2  score: -20.9 bits;  conditional E-value: 2
       SURF6   4 leerrkkkeerkekkkeekeeakkeeeekaeekkakeeaeakkskkkkkkkkeas...........kkee.......dlvFskldfedgaekks 79 
                  e++r+kk+e+k++k+ ek+ ++++e++++e++++k+e++akk++kk++kk e++           +  +       d + s++++ dg+++++
  CCE29880.1 160 REAKREKKNEKKAEKRTEKKTEEETENKAEEKTEEKTEKNAKKADKKSDKKAEKKaekkapkpeqnS--TvveatekDDANSQIKV-DGSDEAA 250
                 3444555555555555555444443333333333332222222222222222221333444444330..13333444555555555.4433333 PP

  == domain 3  score: 145.9 bits;  conditional E-value: 1.4e-46
       SURF6   1 eelleerrkkkeerkekkkeekeeakkeeeekaeekkakeeaeakkskkkkkkkkeaskkeedlvFskldfedgaekkskkkkkkk..kkkgptkkdpk 97 
                 ++lleerr k+++r+e+kkeek++a++e+++ +ee+ a+++ + + +++ + ++ +      +++F++++f+dg+++++++++     kkkgp+  d+k
  CCE29880.1 339 QQLLEERRTKQAQRAERKKEEKKKARQEAARLREEALASNSPDVT-TPTVELEDPA-----GKFSFGRVAFADGTQMSHDLSYVLTkgKKKGPS--DVK 429
                 689**********************************99999988.3333333333.....39********************99878899999..*** PP

       SURF6  98 qaLkkleakkakleelkeekrkeieekekWekalakaeGeKvkDDeklLkkalKrkekeKkkskkeWkeRkekvekkkaarqkKReeNikkRkeekkdk 196
                 +aL k++++k++lee+ +ekr+ei eke W +a +kaeGeKv+D e++Lkka  rke + +kskkeWk+R  +v  ++++rqkKReeNikkR+e+k   
  CCE29880.1 430 TALLKVQNQKKRLEEMAPEKRAEISEKEVWLTARRKAEGEKVHDSEARLKKAKNRKEAAERKSKKEWKDRASGVGLAQKERQKKREENIKKRREDKLLG 528
                 ***********************************************************************************************9765 PP

       SURF6 197 k 197
                 k
  CCE29880.1 529 K 529
                 5 PP

>> RRP14  60S ribosome biogenesis protein Rrp14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.3   3.9e-20   3.5e-16       1      62 []       9      59 ..       9      59 .. 0.92
   2 ?   -3.8   0.7         2   1.8e+04      52      55 ..      75      78 ..      63      91 .. 0.45
   3 ?   -0.8   0.4      0.28   2.5e+03      35      55 ..     119     131 ..      97     140 .. 0.66
   4 ?   -0.9  12.8      0.29   2.6e+03      28      56 ..     147     175 ..     139     179 .. 0.77
   5 ?   -4.5  21.3         2   1.8e+04      25      57 ..     185     219 ..     177     221 .. 0.69
   6 ?   -0.5   7.7      0.22   1.9e+03      39      56 ..     347     365 ..     320     371 .. 0.61
   7 ?   -9.0  13.8         2   1.8e+04      33      53 ..     474     494 ..     417     501 .. 0.73
   8 ?   -5.3   9.7         2   1.8e+04      40      59 ..     507     526 ..     502     541 .. 0.82

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 3.9e-20
       RRP14  1 rLeahnkfFdsLlslIPakfYlpkdeeeednskklkkqkkkkakkqtkeeskkaKraKLDPd 62
                rL++h+k+Fd+LlslIPak+Y++     ed+s    +q+++  kkqtk+e+ +a+r KLDPd
  CCE29880.1  9 RLRDHAKAFDGLLSLIPAKLYYG-----EDTS----NQWNR--KKQTKQEAAAARRGKLDPD 59
                79*********************.....4444....59999..******************8 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2
       RRP14 52 kkaK 55
                + ++
  CCE29880.1 75 QHKR 78
                1111 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.28
       RRP14  35 lkkqkkkkakkqtkeeskkaK 55 
                 lkk+  ++ kkq        K
  CCE29880.1 119 LKKKTEDSNKKQ--------K 131
                 444444444443........3 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.29
       RRP14  28 eednskklkkqkkkkakkqtkeeskkaKr 56 
                 +ed+ k  kk +k++ak++ k e+k+ Kr
  CCE29880.1 147 AEDTVKLSKKEAKREAKREKKNEKKAEKR 175
                 56666666888999999999999999998 PP

  == domain 5  score: -4.5 bits;  conditional E-value: 2
       RRP14  25 dee.eednskklkkqkkkkakkqt.keeskkaKra 57 
                 +++ ee++++k  k++kk+ kk   k+e+k+ K+a
  CCE29880.1 185 ENKaEEKTEEKTEKNAKKADKKSDkKAEKKAEKKA 219
                 44445556668999999999998855555555876 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 0.22
       RRP14  39 kkkkakkqt.keeskkaKr 56 
                  k+++ +++ kee+kka++
  CCE29880.1 347 TKQAQRAERkKEEKKKARQ 365
                 2222222234777777775 PP

  == domain 7  score: -9.0 bits;  conditional E-value: 2
       RRP14  33 k..klkkqkkkkakkqtkeeskk 53 
                 +  +lkk+k++  k++++ +skk
  CCE29880.1 474 SeaRLKKAKNR--KEAAERKSKK 494
                 22244444444..4444444444 PP

  == domain 8  score: -5.3 bits;  conditional E-value: 2
       RRP14  40 kkkakkqtkeeskkaKraKL 59 
                 +k+++k+++e+ kk + +KL
  CCE29880.1 507 QKERQKKREENIKKRREDKL 526
                 45567778899999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3495  (0.194936); expected 358.6 (0.02)
Passed bias filter:                      746  (0.0416086); expected 358.6 (0.02)
Passed Vit filter:                       430  (0.0239835); expected 17.9 (0.001)
Passed Fwd filter:                       190  (0.0105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 3.19u 0.38s 00:00:03.57 Elapsed: 00:00:00.68
# Mc/sec: 2452.91
//
Query:       CCE29881.1  [L=229]
Description: related to 28 kDa heat-and acid-stable phosphoprotein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.8e-27   94.2  11.4    4.8e-27   94.2  11.4    2.2  2  PP28         Casein kinase substrate phosphoprotein PP28
  ------ inclusion threshold ------
       0.44   11.2   3.1       0.29   11.8   0.8    1.9  2  ABC_trans_N  ABC-transporter N-terminal
        5.9    3.9  11.5        7.1    3.6  11.5    1.0  1  GREB1        Gene regulated by oestrogen in breast cancer


Domain annotation for each model (and alignments):
>> PP28  Casein kinase substrate phosphoprotein PP28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   4.3      0.22   1.3e+03      20      48 ..      67     100 ..      47     107 .. 0.57
   2 !   94.2  11.4     8e-31   4.8e-27       1      82 [.     125     210 ..     125     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.22
        PP28  20 e.....kkaekpk.elsRrEreaiekqkakeryek 48 
                 +     +++++ +   +R +r a++k+++++   k
  CCE29881.1  67 DsddpdAAKTA-AgAENRDDRKALKKARKEAAVAK 100
                 13445333333.33677888888888777665544 PP

  == domain 2  score: 94.2 bits;  conditional E-value: 8e-31
        PP28   1 NPNrvkkkknqklaealdee...kkaekpk.elsRrEreaiekqkakeryeklhaegkTeeakaDLaRLalireqReeaaakreae 82 
                 NPN++k++++q++ae+   +   +  ek +   +R+Erea+e+++akery+klhaegkT++akaD+aRL+lireqR+++aa+r+a 
  CCE29881.1 125 NPNHSKSARKQTQAEVEPVDeiaEGVEKMSvPGNRKEREAAEAAAAKERYMKLHAEGKTDQAKADIARLKLIREQRAADAARRQAS 210
                 9*************97666688744555555899**************************************************96 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8   4.9e-05      0.29      19      58 ..      54     108 ..      23     109 .. 0.73
   2 ?   -1.8   0.1      0.81   4.9e+03      21      21 ..     142     142 ..     113     188 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.9e-05
  ABC_trans_N  19 s...e....sssedeeeed.........se.FdlekwlknlreridrdgikprklGV 58 
                  +   e    +s+ed++  d          e  d +k lk+ r+++  +  k+r+++V
   CCE29881.1  54 DaeeEdseeDSEEDSD--DpdaaktaagAEnRDDRKALKKARKEAAVAKQKLRTVEV 108
                  1222122223333333..2558899999888************************99 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.81
  ABC_trans_N  21 s 21 
                  +
   CCE29881.1 142 P 142
                  1 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  11.5    0.0012       7.1    1083    1243 ..      46     211 ..      33     227 .. 0.40

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0012
       GREB1 1083 vreksvgsdllesdaeklsstdnedeelqedge..rpksnssavqstsdsvaadaaeesskts....pvkvekseskdavesglsskasakselse. 1172
                   ++ + +sd  e+d+e++s+ d +d ++++ +   ++++  +a++++ ++ a  +++ ++       p   + ++ +d+ +++ +sk++ k+++ e 
  CCE29881.1   46 ANNAGDRSDAEEEDSEEDSEEDSDDPDAAKTAAgaENRDDRKALKKARKEAAVAKQKLRTV-EvgdlP-SSDDESDDDMPANPNHSKSARKQTQAEv 140 
                  5677788999999999999999999887654430033333344444433333322222222.123332.1222223333333344443333333321 PP

       GREB1 1173 .asaaaasaseeakspkasvtseeeeseeskekekeslsketesqlsleaseqkealdakasskssssssss 1243
                   +    a   e+++ p +    e  e++++ke+  +    e +++  +    + + + +++++  ++ ++s+
  CCE29881.1  141 ePVDEIAEGVEKMSVPGNRKEREAAEAAAAKERYMKLHA-EGKTDQAKADIARLKLIREQRAADAARRQAST 211 
                  122333333333334443333333333322222222222.22222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1380  (0.0769703); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 1655.20
//
Query:       CCE29882.1  [L=380]
Description: uncharacterized protein CPUR_03730 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2882.99
//
Query:       CCE29883.1  [L=1120]
Description: uncharacterized protein CPUR_03731 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-61  206.3   0.1    7.4e-61  205.2   0.1    1.5  1  Nrap_D4   Nrap protein nucleotidyltransferase domain 4
    6.8e-58  195.0   0.6    3.7e-57  192.6   0.8    2.2  2  Nrap_D5   Nrap protein PAP/OAS1-like domain 5
    6.9e-50  168.8   0.2      8e-47  158.8   0.0    2.5  2  Nrap_D2   Nrap protein PAP/OAS-like domain
    1.5e-46  158.2   0.1    2.7e-46  157.4   0.1    1.5  1  Nrap      Nrap protein domain 1
      2e-43  148.3   0.0    4.9e-43  147.0   0.0    1.7  1  Nrap_D3   Nrap protein domain 3
    1.7e-34  118.9   0.0      5e-34  117.4   0.0    1.8  2  Nrap_D6   Nrap protein domain 6


Domain annotation for each model (and alignments):
>> Nrap_D4  Nrap protein nucleotidyltransferase domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.2   0.1   2.5e-64   7.4e-61      16     213 .]     618     806 ..     611     806 .. 0.97

  Alignments for each domain:
  == domain 1  score: 205.2 bits;  conditional E-value: 2.5e-64
                 S-TT--HHHHHHHHHHHHHHHHHHT-.--SS-EEEEEE-SGGGGT--SS---TT.......-.....TTSTEEEEEEE---TTS-SSHHHHHHHHHHHH CS
     Nrap_D4  16 qsstseeafssvikaFdeLekdlrsLedLPLsirsvqpaspalRytsvfppvpvklsppkaaksskeylepidvvlqfEsSgkWPddleAiqkvKaAFl 114
                  s+ ++eaf+++++aF ++e+d+r+L++LPL+ir+++p+sp  Ry+s++pp +         + +k+++ep+dv l fE+S+kWP++l+Aiq++K+ Fl
  CCE29883.1 618 LSHLDKEAFDAARRAFATFETDIRNLDELPLQIRQLSPVSPLARYSSIEPPLL---------GYHKDTIEPMDVNLFFEASSKWPENLTAIQEAKVEFL 707
                 578899*********************************************99.........78999******************************** PP

                 HHHHHHH.HH-TTSEEEEEE-------...EEEEEE-TTS-EEEEEEE-TTHHHHHHHHH...HHS-TTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHT CS
     Nrap_D4 115 lkiaeeLeekkseikarvgldnssekianqayLdvlkesgfaFrlrilherEltllerqlkdkglakkereeaaealaklerrfvhlprhtsaiaglct 213
                 l  +++L+++++ +++++g++n +  ++n ayLd+++esg+aFrlri+++ E+tll+rq+ +k+++++ r eaaeala++++++++lp+ht++ia++ct
  CCE29883.1 708 LDFDRRLTAANDTLTTQLGRENREIGTENLAYLDIIYESGAAFRLRIYCDLEETLLQRQVLNKSMEARVRDEAAEALAAFKWQYTTLPLHTQTIATFCT 806
                 ********999999********99999**********************************************************************97 PP

>> Nrap_D5  Nrap protein PAP/OAS1-like domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2   3.6e+03       1      21 [.     301     321 ..     301     326 .. 0.82
   2 !  192.6   0.8   1.2e-60   3.7e-57       3     161 ..     810     963 ..     808     964 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                 -TTHHHHHHHHHHHHHHTT-T CS
     Nrap_D5   1 fpaysptvrLvkrWlashlLl 21 
                 +pa+s ++ L + Wl+++ + 
  CCE29883.1 301 CPAFSDACILGRTWLQQRGFD 321
                 699************987655 PP

  == domain 2  score: 192.6 bits;  conditional E-value: 1.2e-60
                 THHHHHHHHHHHHHHTT-T.TTS-HHHHHHHHHHHHHS-TTS----SHHHHHHHHHHHHHH--TTT--EE----------HHHHHHHHHHHHHHHHH-T CS
     Nrap_D5   3 aysptvrLvkrWlashlLleghvseelvELlvakvFlqpapysvPssaetGFlrvLelLarwdWkeepLivdlnesekltaeeikeietrfealrksdp 101
                  +s t+rLvk+W+ +h+L  gh+s+el+EL+v++vFlqp+p+++Pss+ +GFlr+L++L+rwdW+ee Livd    e++t+ee++++++++e++r++dp
  CCE29883.1 810 PLSHTIRLVKQWFCKHKLR-GHISDELIELFVLHVFLQPYPWRMPSSPSSGFLRTLSFLSRWDWREEALIVDSA--ETTTTEERNTMRRALESWRQRDP 905
                 589**************77.****************************************************99..789******************** PP

                 TSSS----EE-SS-TTS-TTT--HH...HHHHHHHHHHHHHHHHHHH....-SSHHHHTS CS
     Nrap_D5 102 amnktalfvatekDkegtlwtkekpskvvaaRltaLAkaalelleekevsekldvkslFt 161
                 +mn+ ++fvat+ D++g+ +t+++psk+va+R+t+LAkaa++l++++    +ld+++lF+
  CCE29883.1 906 HMNHLVMFVATSSDHSGQEYTRNSPSKLVASRMTRLAKAACKLVRDQG--LRLDPAKLFE 963
                 ***********************************************4..4899999997 PP

>> Nrap_D2  Nrap protein PAP/OAS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8   0.0   2.7e-50     8e-47       1     152 []     303     446 ..     303     446 .. 0.97
   2 !    7.4   0.1    0.0011       3.3       6      95 ..     815     891 ..     811     901 .. 0.62

  Alignments for each domain:
  == domain 1  score: 158.8 bits;  conditional E-value: 2.7e-50
                 THHHHHHHHHHHHHHTT--SS--TS-S-SHHHHHHHHHHHTSBBSTTS-BSS-TT--HHHHHHHHHHHHHHS--SS-EEEE-------BEEES-.--SS CS
     Nrap_D2   1 afkdAclLlkvWlrqRgfgssirkaggfggfewamllalllqgggkkgrkklskslssyqlfkavlqfLastdltkkpiflgaskseeskkeseeefsk 99 
                 af dAc+L+++Wl+qRgf+++i++ ggfg+few+++lalllq+gg++g+++ls+slss++lfka +qfL+ td+ k+p+ +gas+  + k+++e++   
  CCE29883.1 303 AFSDACILGRTWLQQRGFDGTISH-GGFGHFEWSTMLALLLQMGGRNGQAALSNSLSSTELFKAGIQFLSITDFVKRPFAFGASD-IDIKTIRESG--- 396
                 79**********************.********************************************************9887.5678888988... PP

                 ...--EEETTT--BTTTT--HHHHHHHHHHHHHHHHHHT-SSS--HHHHHT-- CS
     Nrap_D2 100 afepvlvdpsgklNllakmtassydlLqqeAketlelLddsssdqFdslFltk 152
                    pv++dp++k+N+l+km++ss+dlL+ +Ak t +lL+d+++d+F+++F+ k
  CCE29883.1 397 ---PVMFDPTRKINILYKMSPSSADLLRSYAKSTSDLLADENADKFQPTFIMK 446
                 ...***********************************************976 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHTT--SS--TS-S-SHHHHHHHHHHHTSBBSTTS-BSS-TT--HHHHHHHHHHHHHHS--SS-EEEE-------BEEES-. CS
     Nrap_D2   6 clLlkvWlrqRgfgssirkaggfggfewamllalllqgggkkgrkklskslssyqlfkavlqfLastdltkkpiflgaskseeskkesee 95 
                 + L+k W  +++++      g +++ ++ +++ +++      +        s    f  +l fL+++d++++ +++++ ++  +++e+++
  CCE29883.1 815 IRLVKQWFCKHKLR------GHISDELIELFVLHVFL-----QPYPWRMPSSPSSGFLRTLSFLSRWDWREEALIVDSAET--TTTEERN 891
                 56666666666666......55555666666666651.....22222222333456999*****************77663..3333333 PP

>> Nrap  Nrap protein domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.4   0.1   9.1e-50   2.7e-46       1     151 [.     141     299 ..     141     300 .. 0.94

  Alignments for each domain:
  == domain 1  score: 157.4 bits;  conditional E-value: 9.1e-50
                 EEEEEE--GGG--TTTTSTTHHHHHHHHHHHHHHHHHHHHHHHTGTEEEEEEEGGG-TT-EEEEEEE--................-.----GGGTEEEE CS
        Nrap   1 VDlavemPkslfqekDylnlRyfyKRalYLavlaaelskskkkedlvkvsfeylngdelkpiLvirpkk................eaekkfskskfrir 83 
                 +D++ +mP+slfq+kDyl++Ryfy+Ra+++a++aa+++ks  + d+vk +feyln+++l+p+Lv+r  +                 a+k+++k+++ ir
  CCE29883.1 141 IDMVAQMPASLFQDKDYLDMRYFYRRAYFIAHIAAHVRKS--MGDIVKTDFEYLNENPLLPVLVLRLLAnvavdagnaakegklvPAKKDTQKKSYYIR 237
                 8************************************995..7799*********************999***************889999******** PP

                 EEEE--TTSS-GGGGSTTS--S----........---------HHHHHHHHHTT-HHHHHHHHHHHHH CS
        Nrap  84 iipvapsdlfklsklspsknnirvetlkeekesseeeetlppTPlYNssilsdllleehlkllhkakk 151
                 +ip+ap+++f++skl+ps n++r    ++   s+e+++t++++P+YNs+i+ ++ + ++l++l++ak+
  CCE29883.1 238 LIPCAPDKMFPWSKLTPSANCTRL---GS---SDEKKSTSLASPFYNSTINGEMAFIQYLRVLAHAKN 299
                 ***********************4...33...34568899************************9987 PP

>> Nrap_D3  Nrap protein domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0   0.0   1.6e-46   4.9e-43       2     159 ..     451     599 ..     450     600 .. 0.91

  Alignments for each domain:
  == domain 1  score: 147.0 bits;  conditional E-value: 1.6e-46
                 HHHSSEEEEEE--HHH-SS---HHHHHHHSSHHHHHHHHHHHHHHHHHGGGEEEEEEEEE.T-EE-TTSSS-BSSS-SEEEEEEEE-TTTTT-SEEEEE CS
     Nrap_D3   2 llkfDlvlriklseekakekkeekekldlseaeeallskvssvlkkaLgdRvkliaikle.eeewsiekkkskeakeskleiglllnpenaerlvdkGP 99 
                 ++ fD+v++i++      + ++ ++++d+s+a+++++ +v++vlk+a+g+R++l++++++ +++w ++ +   ++ +++l + ++++p+++ r+++ GP
  CCE29883.1 451 FQVFDAVMDINKL-----DLSKFEHSTDRSSAIWKFSLEVHRVLKRAFGNRAQLVHVQQQpTKPWALSASG--SNPPTRLLVAVMFDPAHMPRQMEYGP 542
                 6789******999.....3345677889999***************************99777****9766..577899******************** PP

                 E-S--HHHHHHHHHHGGGEEEEE-TTS-EEEEEE----SSS...-HHHHHHHHHHHHHT- CS
     Nrap_D3 100 saedkeeaaeFreFWgekselRrFkDGsIlesvvWeksskserrsiveqIvkyiLkrhlk 159
                 +ae+++eaa+Fr+FWg+k+elRrFkDGsIle+v W  +      +i+++I++y Lkrhl+
  CCE29883.1 543 PAEEEKEAAAFRQFWGDKAELRRFKDGSILECVEWGAKMP-F--QICHEIASYSLKRHLG 599
                 ***********************************66654.4..9*************96 PP

>> Nrap_D6  Nrap protein domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         3   8.9e+03      61      95 ..     489     538 ..     484     550 .. 0.69
   2 !  117.4   0.0   1.7e-37     5e-34       1     135 []     966    1115 ..     966    1115 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3
                 HHHHHTTTEEEEE-S-HH................EEEEEEE-GGGSS-EE- CS
     Nrap_D6  61 Leraygdtllffydklgg................dvigglwnpsvlkprkf 95 
                 L+ra+g+ + + + +++                   ++++++p+ + pr++
  CCE29883.1 489 LKRAFGNRAQLVHVQQQPtkpwalsasgsnpptrLLVAVMFDPA-HMPRQM 538
                 88888888888887777666666666666666666677777774.455555 PP

  == domain 2  score: 117.4 bits;  conditional E-value: 1.7e-37
                  --S-SEEEEEE-SS--TTTT..........TB---------------GGGGGGS-HHHHHHHHHHHHHTTTEEEEE-S-HHEEEEEEE-GGGSS-EE CS
     Nrap_D6    1 ledYDvvihLkpkvlprlseava...ekspgakkkskfkNlderaesdkllvkfdpvqllleeLeraygdtllffydklggdvigglwnpsvlkprk 94  
                  l+dYD+++hL++k    l+++ a   ++ +  kk+s++kNlder+++ +l+++ +p+++l++eL+r+y+d+l+ff ++ +++v++++w+p+++ ++k
  CCE29883.1  966 LQDYDILLHLSSKCTRALEREAAlaaSAASPFKKPSQYKNLDERTGRIPLPTRTHPTTVLVQELQRVYQDSLIFFSGASDDSVVAAIWDPKLQPRQK 1062
                  79**********999998777668875556666699*******************************************************88888* PP

                  --TT--S-EEESSSS..............EEEE-HHHHHHHHHHHHGGGEEEE CS
     Nrap_D6   95 fkvnlgystkpvakekk............evelNkeaileeiarlGggLvksi 135 
                  f+v+l+y+++ va e++            +v++N++a+l eiar Gg+L+k+i
  CCE29883.1 1063 FRVGLPYNFCGVAVETEdedeveegstldMVQVNQKAVLLEIARAGGDLIKRI 1115
                  *********9999888889********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 8020.33
//
Query:       CCE29884.1  [L=1264]
Description: related to nuclear pore membrane protein POM152 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.6   0.0        3.7    7.7   0.1    4.0  4  I-set     Immunoglobulin I-set domain


Domain annotation for each model (and alignments):
>> I-set  Immunoglobulin I-set domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.53   9.5e+03      19      33 ..     338     352 ..     336     365 .. 0.83
   2 ?    0.1   0.0     0.048   8.7e+02      14      43 ..     687     718 ..     675     750 .. 0.72
   3 ?   -0.2   0.0      0.06   1.1e+03       7      33 ..     781     807 ..     777     821 .. 0.85
   4 ?    7.7   0.1   0.00021       3.7       7      75 ..    1177    1245 ..    1171    1253 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.53
                 EEEEEEECSSS-EEE CS
       I-set  19 electveGepepsvs 33 
                 +l+ +v+G+p++++ 
  CCE29884.1 338 DLSLEVRGTPPLKIV 352
                 58899******9996 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.048
                 TTS-EEEEEEEECSSS-EEEEEET..TCB-ST CS
       I-set  14 eGesvelectveGepepsvsWakd..gselks 43 
                  ++++  ++  +G+p+ s +W +   g+ + +
  CCE29884.1 687 LDSAAVVKVALNGDPPFSLEWETVydGKRTME 718
                 56778889999**********87554555444 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.06
                 -CEEEEETTS-EEEEEEEECSSS-EEE CS
       I-set   7 lkdvevseGesvelectveGepepsvs 33 
                  +++ + e++s++l ++ +Gep+ ++ 
  CCE29884.1 781 KHSISAVEDSSLRLPIRLQGEPPWTIH 807
                 57789999**************98875 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.00021
                  -CEEEEETTS-EEEEEEEECSSS-EEEEEETTCB-STSSSEEEEEETTEEEEEESSB-GGGGEEEEEEE CS
       I-set    7 lkdvevseGesvelectveGepepsvsWakdgselkssqrvkvtveeaeytLtIsnvevsDeGkYtcka 75  
                   ++v ++eG++v++  + +G+p+ +++ ++  +  +  ++v ++ +++ +  + + +++s+eG+Y+++a
  CCE29884.1 1177 QSRVDIHEGNEVDILFEFWGTPPFEFTYTRSTNAKRGHRSVVIETRHEVSYEHSKVIKASQEGTYEVVA 1245
                  57899***********************99987777777888888886666667888999******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 8954.24
//
Query:       CCE29885.1  [L=85]
Description: uncharacterized protein CPUR_03733 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-08   33.7   0.0    3.7e-08   33.4   0.0    1.2  1  Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 


Domain annotation for each model (and alignments):
>> Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0     2e-12   3.7e-08       1      38 [.      46      83 ..      46      85 .] 0.93

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2e-12
                   ---EE--HHHHHHHHHHHT--S..EEEE--S.SHHHTT CS
  Peptidase_C12  1 wlplEsdPevftelleklGvkgvqfeevyslddellas 38
                   w ++Es+P++f+ +l++lGvk vq++e++++d+ +l+ 
     CCE29885.1 46 WGEVESEPAFFNAILRDLGVKRVQVQELFTMDQTSLDA 83
                   999****************************8888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 685.85
//
Query:       CCE29886.1  [L=301]
Description: related to 26S proteasome-associated ubiquitin carboxyl-terminal hydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-25   87.5   0.1    2.1e-24   86.4   0.0    1.6  2  Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 


Domain annotation for each model (and alignments):
>> Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.0   1.2e-28   2.1e-24      99     210 ..       1     138 [.       1     139 [. 0.89
   2 ?   -3.7   0.0      0.47   8.4e+03     118     140 ..     245     267 ..     235     274 .. 0.51

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 1.2e-28
                    HH..STS--.-TTSHHHHHHHHHTTS-HHHHHHHHHT-HHHHHHHTTSC...................................---SSTHH.... CS
  Peptidase_C12  99 lNlekeaeeielgseLkkfkeftkelspeergealenseeireahnsfa.................................segqteapee.... 157
                    +N++    +i+lg++L++fk++t++l +  rg+ ++ +++ir++hnsf                                  +        +    
     CCE29886.1   1 MNAP----DIDLGQQLTEFKDATENLGSSIRGQRISGNQFIRSIHNSFTrrmdhlnadlclendyddakaqkkrkqgsskarK--------Ragkk 84 
                    5644....89**********************************************************999999766665531........23444 PP

                    ...HHS--EEEEEEEEETTEEEEE-TTS.S-EEEEE--T..TTHHHH.HHHHHHHT CS
  Peptidase_C12 158 ...eedvafHFiafvpvngklyeLDGlkegPidlgeveeeeedledavrkviqeri 210
                       + ++ +HFia+vp +g ++eLDGl+++P ++g++  +++d+++++++ i++r+
     CCE29886.1  85 kkaSLEYGYHFIAYVPYDGLVWELDGLRSKPHEIGSI--NGNDWTTVAKPQIEARM 138
                    4446788******************************..469***********998 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.47
                    HHHHTTS-HHHHHHHHHT-HHHH CS
  Peptidase_C12 118 keftkelspeergealenseeir 140
                    + + k+   e r+e+ + +e+ r
     CCE29886.1 245 RTQLKSAIDEFRAELASADEKDR 267
                    44444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1049  (0.0585086); expected 358.6 (0.02)
Passed bias filter:                      647  (0.0360868); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2339.76
//
Query:       CCE29887.1  [L=613]
Description: uncharacterized protein CPUR_03735 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-19   70.2   0.0    3.2e-19   69.0   0.0    1.7  1  Transglut_core2  Transglutaminase-like superfamily
    1.8e-12   47.6   0.0    5.2e-12   46.1   0.0    1.8  2  YccV-like        Hemimethylated DNA-binding protein YccV like


Domain annotation for each model (and alignments):
>> Transglut_core2  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   3.6e-23   3.2e-19       2     154 ..     199     367 ..     198     368 .. 0.84

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 3.6e-23
  Transglut_core2   2 avlaeLdalaaevrae...lsseraaaekleaLnellyeelg...FagneddyydprnslldqVLerrr..GiPislsvvylevArrlglpleg 87 
                      +++++Ld+ aa++r +   ++   + ++k+ aLn+ +  + +    +  +++y+++rn+++ q L++++  ++P++ s++++++A r+g+++++
       CCE29887.1 199 DISQMLDETAARFRVDcegFEGY-TTRQKALALNRWMR-ANRltgMQNPQRNYRNLRNCYIGQALRHEDheSTPLISSAIFCSLASRVGINAQC 290
                      57899*********997775544.45567789999874.444112555566***************98777*********************** PP

  Transglut_core2  88 vgfPghflvrvg..............espegevliDPfnaGrllskedleellraalgaeaeltreflapasnrdvltRll 154
                      ++fP h++  v               + + +++++DP++  + + ++dl++ll +        +++flap+ + ++++R+ 
       CCE29887.1 291 CAFPSHVHAIVLarigwtlddvlfegRGQPEPMYLDPYGTDDEVPASDLQNLLAQSQT----GSEAFLAPVPPISMVRRTA 367
                      ********999999999888888876555666*********************88755....5****************86 PP

>> YccV-like  Hemimethylated DNA-binding protein YccV like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.6   1.4e+04       5      15 ..     257     267 ..     256     273 .. 0.79
   2 !   46.1   0.0   5.8e-16   5.2e-12       3      97 ..     499     598 ..     497     599 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.6
   YccV-like   5 vGqvvrhkryg 15 
                 +Gq +rh+ ++
  CCE29887.1 257 IGQALRHEDHE 267
                 9******9776 PP

  == domain 2  score: 46.1 bits;  conditional E-value: 5.8e-16
   YccV-like   3 yrvGqvvrhkrygyrGVivgw.deecaaseewiekigv.....eelsegrnqpfYhvlvdtedsekvsvrYvaeenlelikssep...iehpeigkyFk 92 
                 +++Gqv+rh+ryg+ GVi+gw d+++a++++   ++ +     ++  +  nq f+ ++ +t ++++     v+ +n+eli++++     + p++gk+Fk
  CCE29887.1 499 FKIGQVFRHRRYGWIGVITGWsDQSFARHMDSAAETLQptgqnSTAIRPPNQFFFMCFPSTGSEPH----VVSPDNIELIHDPTRisdDMFPMAGKFFK 593
                 9********************656666544444444445553333333448889999988888875....89*********98888888999******* PP

   YccV-like  93 rfdga 97 
                 rfd++
  CCE29887.1 594 RFDAE 598
                 **986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4625.14
//
Query:       CCE29888.1  [L=1322]
Description: related to myosin heavy chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-24   85.2   1.9    2.5e-24   85.2   1.9   16.0 14  Cnn_1N           Centrosomin N-terminal motif 1
    1.5e-12   48.0   1.3      1e-06   29.2   0.1    6.3  6  PACT_coil_coil   Pericentrin-AKAP-450 domain of centrosomal t
    7.2e-05   21.9  32.9    7.2e-05   21.9  32.9    7.2  7  DUF812           Protein of unknown function (DUF812)
    7.8e-05   22.3  18.1    7.8e-05   22.3  18.1    7.7  7  MscS_porin       Mechanosensitive ion channel porin domain
      0.006   15.5 188.9       0.12   11.3  28.4    9.3  8  Spc7             Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   1.9   6.9e-28   2.5e-24       1      72 [.     179     250 ..     179     251 .. 0.98
   2 ?   -2.1   9.6       1.2   4.4e+03      21      70 ..     276     334 ..     258     337 .. 0.67
   3 ?   -0.8  17.6      0.51   1.8e+03       2      70 ..     323     396 ..     323     420 .. 0.89
   4 ?    2.7   6.4     0.041   1.5e+02      18      68 ..     380     436 ..     380     443 .. 0.83
   5 ?    0.0   8.4      0.27   9.7e+02      26      72 ..     455     500 ..     433     501 .. 0.71
   6 ?    3.2   5.3     0.028     1e+02      22      68 ..     493     545 ..     491     549 .. 0.92
   7 ?   -8.3  15.2         5   1.8e+04       5      64 ..     561     623 ..     556     685 .. 0.73
   8 ?   -3.8   5.7       4.3   1.5e+04      22      36 ..     656     680 ..     636     716 .. 0.46
   9 ?    3.0   0.1     0.031   1.1e+02      22      70 ..     705     754 ..     697     756 .. 0.80
  10 ?    0.4   3.5      0.21   7.4e+02      26      69 ..     760     805 ..     758     808 .. 0.79
  11 ?   -1.2   4.2      0.67   2.4e+03      36      59 ..     818     841 ..     808     881 .. 0.63
  12 !    8.0   1.8   0.00087       3.1      15      70 ..     923     979 ..     912     989 .. 0.81
  13 ?   -1.1   0.9       0.6   2.1e+03      36      69 ..     991    1024 ..     980    1030 .. 0.60
  14 ?    3.5   1.9     0.022        79      23      68 ..    1032    1086 ..    1031    1090 .. 0.65

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 6.9e-28
      Cnn_1N   1 TlrEqeeqidkLkKENFdLKLriyfLeerleklseeqkeellkenielkveveslqkelkekkkllreaeka 72 
                 TlrEqe++i ++++ENF+LKL+i+fLe +l+k ++  +e++lken+elkv+  ++q++l+++kk++ +ae++
  CCE29888.1 179 TLREQESVIHRIENENFGLKLKIHFLEIALQKAGPGMSEAALKENTELKVNQVTMQRDLQRYKKHVASAERE 250
                 9********************************************************************997 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
      Cnn_1N  21 LriyfLeerleklse.........eqkeellkenielkveveslqkelkekkkllreae 70 
                 Lr+  L+ +l+ ++           q+ +  +e  +l++++e+l+ +l ek++l++e  
  CCE29888.1 276 LRLEQLQRELNDKEArvndlqrqlGQSHDEDDEIEKLRETIEDLESDLREKDRLITERD 334
                 56666666666555555555556644444444445599999999999999999998865 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.51
      Cnn_1N   2 lrEqeeqidkLkKENFdLKLriyfLeerleklse.....eqkeellkenielkveveslqkelkekkkllreae 70 
                 lrE +  i + + E  dLK ++   e+r+ ++++     e+ ++  +e+ e k+++e+lq ++ +++++++e++
  CCE29888.1 323 LREKDRLITERDDELEDLKVQVGAAEDRVRESRQriaelEETQNHNEELEEAKETIEDLQTSIRQLEEQMDELK 396
                 6888888888889999******9999999999999999999999999999999999999999999999998876 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.041
      Cnn_1N  18 dLKLriyfLeerleklse......eqkeellkenielkveveslqkelkekkkllre 68 
                 dL+  i  Lee++++l+e      +qk+ +++ + el++e+++   + k + ++++e
  CCE29888.1 380 DLQTSIRQLEEQMDELKEttdnavSQKDRAERDLEELQEEMANKSVTTKGLSRQIEE 436
                 67778999*********9888999888889999999999988888887777777665 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 0.27
      Cnn_1N  26 Leerleklseeqkeellkenielkveveslqkelkekkkllreaeka 72 
                 Le++l k +e ++e+l +   el+++ ++ q++ ++   +++e+e++
  CCE29888.1 455 LEKELAKANE-DNEQLRSDMEELRTDSHNTQRKQHSHSTKIKELETE 500
                 4555555554.888888888888888888888888888888888765 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.028
      Cnn_1N  22 riyfLeerleklse......eqkeellkenielkveveslqkelkekkkllre 68 
                 +i++Le +l   ++      e  e+l++e +  +++ e+ ++e++e++++l e
  CCE29888.1 493 KIKELETELLTVADekdllqERYESLVAESVTYQQNAEHFENEVEELRQKLLE 545
                 899999999999888999999****************************9987 PP

  == domain 7  score: -8.3 bits;  conditional E-value: 5
      Cnn_1N   5 qeeqidkLkKENFdLKLriyfLeerleklse...eqkeellkenielkveveslqkelkekkk 64 
                 ++ +id+L+ E  +L+ ++ + ++  ++ se    +k++ll+e+   +++   lq++++++++
  CCE29888.1 561 YQDEIDRLNDEITNLQAEVRERDNLYDNDSEkweNEKQALLSERDRAEEKAVGLQRTIDRLRE 623
                 678999999999999999966555555555555555555566555555555555555555554 PP

  == domain 8  score: -3.8 bits;  conditional E-value: 4.3
      Cnn_1N  22 riyfLeerleklse..........e 36 
                 +i  L+++le ++            
  CCE29888.1 656 QISDLQDALETRQAhlvqsrnelsI 680
                 3444444444444433333222222 PP

  == domain 9  score: 3.0 bits;  conditional E-value: 0.031
      Cnn_1N  22 riyfLeer.leklseeqkeellkenielkveveslqkelkekkkllreae 70 
                 +i +L+++   ++++  ++++ k    l++++++l+ +l + +  l ea+
  CCE29888.1 705 EIEMLRSKpTIQGTPGRINAASKDSQILRDQIAKLKSDLAATQGALAEAQ 754
                 55566655334556699999999999******************999997 PP

  == domain 10  score: 0.4 bits;  conditional E-value: 0.21
      Cnn_1N  26 Leerleklseeqke..ellkenielkveveslqkelkekkkllrea 69 
                 L+e+l++ s+ +++  ++ +e+ +l++   +l +e+ ++k++ r++
  CCE29888.1 760 LQEQLHQQSSHDNDtlQIDQERLDLRTAKLKLDNEVRRLKDECRSL 805
                 8999999999555511556899999999999999999999988776 PP

  == domain 11  score: -1.2 bits;  conditional E-value: 0.67
      Cnn_1N  36 eqkeellkenielkveveslqkel 59 
                 +++e++ ++ ++l++e+ +l+ ++
  CCE29888.1 818 DEIEKAAAQEVKLRQEIVQLRTKM 841
                 556666666666666666665543 PP

  == domain 12  score: 8.0 bits;  conditional E-value: 0.00087
      Cnn_1N  15 ENFdLKLriyfLeerleklseeqkeell.kenielkveveslqkelkekkkllreae 70 
                 E   L L+i++Lee+l++ + +q++ +  +   +   ev +l+k+l e ++ l+++ 
  CCE29888.1 923 EVKQLNLQIAELEEELHEAKISQITRASpARGSDSYKEVTTLEKKLAETRRALDDLR 979
                 666799*************99777777624567888889999999988888888875 PP

  == domain 13  score: -1.1 bits;  conditional E-value: 0.6
      Cnn_1N   36 eqkeellkenielkveveslqkelkekkkllrea 69  
                     eell+++ + +++   l+  l+e +++ +ea
  CCE29888.1  991 HRLEELLNQLNDAEDQKLVLEEVLEEAREQADEA 1024
                  4445566666666666666666666665555554 PP

  == domain 14  score: 3.5 bits;  conditional E-value: 0.022
      Cnn_1N   23 iyfLeerleklse.........eqkeellkenielkveveslqkelkekkkllre 68  
                  i++L+++l+k +           +  +  k + + + e+++l+ ++++ ++l+++
  CCE29888.1 1032 IHYLQHKLNKAERdrdaalashVKTSKQGKHLRKSQAEIANLESDVQQQQELINR 1086
                  8999999999999677777544222222233445677777888888877777766 PP

>> PACT_coil_coil  Pericentrin-AKAP-450 domain of centrosomal targeting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.5      0.63   2.2e+03      19      65 ..     455     499 ..     452     505 .. 0.75
   2 ?   -4.0   0.3         5   1.8e+04       7      38 ..     538     569 ..     537     601 .. 0.55
   3 ?   -1.3   0.3      0.93   3.3e+03       7      44 ..     898     938 ..     887     983 .. 0.60
   4 ?   -2.5   1.9       2.2   7.9e+03      18      45 ..    1034    1061 ..    1001    1113 .. 0.59
   5 !   27.3   0.1   1.1e-09     4e-06       1      28 [.    1167    1194 ..    1167    1195 .. 0.96
   6 !   29.2   0.1   2.9e-10     1e-06      27      83 .]    1224    1288 ..    1217    1288 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.63
  PACT_coil_coil  19 Lllqlevfqacnkadlrllarigvelkkkkkskeeekrrkprrklrs 65 
                     L+ +l+++++ n++  + ++++++ +  +++++++++++++ + l +
      CCE29888.1 455 LEKELAKANEDNEQLRSDMEELRTDS--HNTQRKQHSHSTKIKELET 499
                     67789999999999999999999999..5666667777777766665 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5
  PACT_coil_coil   7 slRkdlayqKrYLllqlevfqacnkadlrlla 38 
                     +lR+ l  +K Y   + ++  +  + ++  l+
      CCE29888.1 538 ELRQKLLEEKDYAVELEKDLRQQYQDEIDRLN 569
                     67888888888855555554444444444443 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.93
  PACT_coil_coil   7 slRkdlay..qKr..YLllqlevfqacnkadlrllarigvel 44 
                     +lR+dl    qK+  YL+ + + +++ ++ +l++ a+++ el
      CCE29888.1 898 QLRRDLSNyrQKEldYLQQETAHRTEVKQLNLQI-AELEEEL 938
                     5666665334554336666666666666666653.3334333 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2.2
  PACT_coil_coil   18 YLllqlevfqacnkadlrllarigvelk 45  
                      YL+ +l+++++  +a l++  +  ++ k
      CCE29888.1 1034 YLQHKLNKAERDRDAALASHVKTSKQGK 1061
                      5555555555555555554333333332 PP

  == domain 5  score: 27.3 bits;  conditional E-value: 1.1e-09
  PACT_coil_coil    1 rleReeslRkdlayqKrYLllqlevfqa 28  
                      r+eRe+slR+d+a++K++ +lql+v++a
      CCE29888.1 1167 RWEREASLRSDVAFAKKFVQLQLDVANA 1194
                      9************************987 PP

  == domain 6  score: 29.2 bits;  conditional E-value: 2.9e-10
  PACT_coil_coil   27 qacnkadlrllarigvelkk........kkkskeeekrrkprrklrsaatavraiaRmrvlarkW 83  
                      + +nka+lr l++i+++l +         ++++  e+++++ ++ r ++t++r++aRmr+++r W
      CCE29888.1 1224 TSSNKAQLRELEHIRKHLLQsnkplalpLARNSALEPNSSKPSSIRPFLTMARFVARMRLASRTW 1288
                      679***************733445666788889999999999*********************99 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   8.4      0.11   4.1e+02     319     407 ..     221     301 ..      92     305 .. 0.59
   2 ?    3.0   5.2     0.011        38     440     485 ..     298     343 ..     277     345 .. 0.80
   3 !   21.9  32.9     2e-08   7.2e-05     318     478 ..     358     521 ..     345     522 .. 0.89
   4 !    7.6  16.0   0.00043       1.6     333     436 ..     509     610 ..     504     625 .. 0.89
   5 ?   -3.6  19.4         1   3.6e+03     311     444 ..     630     761 ..     611     766 .. 0.82
   6 ?   -4.9  19.3       2.6   9.4e+03     244     383 ..     726     870 ..     716     887 .. 0.57
   7 ?  -13.4  46.2         5   1.8e+04     220     488 ..     813    1100 ..     809    1104 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.11
      DUF812 319 eteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalvea 407
                 +++ elk ++     ++q+ +++ ++ +++ e e++++++++++++  + ++++ n  +       +++   l+d e+ ++ Lq+ + +
  CCE29888.1 221 KENTELKVNQ----VTMQRDLQRYKKHVASAERELDTYRQQLQELQTRVGRRQNDNDDRL----RLEQLQRELNDKEARVNDLQRQLGQ 301
                 2222222221....2566667777777777777777776666666666665555554432....3345555666677777777766555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.011
      DUF812 440 kekeaerkleeikklrekmkevaeelrqkeellkqLvaeleklpkd 485
                 +  ++ +  +ei+klre++++++++lr+k+ l+ +  +ele+l+ +
  CCE29888.1 298 QLGQSHDEDDEIEKLRETIEDLESDLREKDRLITERDDELEDLKVQ 343
                 44456666799**********************9999999998765 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 2e-08
      DUF812 318 aeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlell.pdaeeniekLqalveasaqrlvel 415
                   + ee+ ++ +eelee +e ie+l+ +i +lee++++l++++  + ++ ++ ++  eel++e+++k  t + l  + ee + +Lq++++ s q+  +l
  CCE29888.1 358 IAELEET-QNHNEELEEAKETIEDLQTSIRQLEEQMDELKETTDNAVSQKDRAERDLEELQEEMANKSVTTKGLsRQIEERLGRLQEELDRSGQDYANL 455
                 3444555.66677**********************************************************999789********************** PP

      DUF812 416 akqWekh...RvplieeyrelkesksekekeaerkleeikklrekmkevaeelrqkeellkqLvae 478
                 +k+  k+    ++l  + +el++   +++ +  +  ++ik+l++++  va+e    +e ++ Lvae
  CCE29888.1 456 EKELAKAnedNEQLRSDMEELRTDSHNTQRKQHSHSTKIKELETELLTVADEKDLLQERYESLVAE 521
                 **98665111679999*************************************9999999999987 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.00043
      DUF812 333 eelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalveasaqrlvelakqWekhRvplieeyr 431
                 + lqe++e+l ++  +++++ +++e++++++ ++l eek    elek+++  ++  + ++  +  i +Lqa+v +  +   + +++We+ +++l+ e  
  CCE29888.1 509 DLLQERYESLVAESVTYQQNAEHFENEVEELRQKLLEEKDYAVELEKDLR--QQYQDEIDRLNDEITNLQAEVRERDNLYDNDSEKWENEKQALLSERD 605
                 569******************************************99765..6777999999*********************************9976 PP

      DUF812 432 elkes 436
                 + +e+
  CCE29888.1 606 RAEEK 610
                 66554 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 1
      DUF812 311 keela..kkaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalvea 407
                 ++e++  k++e+e e+ k++e+    l++qi++l+  +e+ ++ + + +++++ v++el++++ e +++ ++v++ +  +e+l +    i+     ++a
  CCE29888.1 630 NKETKllKAMESETERHKNEEAV---LSRQISDLQDALETRQAHLVQSRNELSIVQDELRQTQIEYQTNVNKVETLQNEIEMLRSK-PTIQGTPGRINA 724
                 33333446777777777777765...99*******************************************************655.568888999999 PP

      DUF812 408 saqrlvelakqWekhRvplieeyrelkesksekekea 444
                 ++++ + l +q  k ++ l +   +l e+++++e+  
  CCE29888.1 725 ASKDSQILRDQIAKLKSDLAATQGALAEAQASREALQ 761
                 9999999999999999999999999999999888654 PP

  == domain 6  score: -4.9 bits;  conditional E-value: 2.6
      DUF812 244 rkkeklqkrlaeqlrkaalkseeaessasksksdlaellsefseksetdslktkgsrft.haeklqftke..elakkaeteeelkkkreeeleelqeqi 339
                 +k+++++++  ++l++ + +++ a  +a+ s++ l+e l++ s+++++   +  ++r++ ++ kl++ +e  +    +++   l + r +  ++l ++i
  CCE29888.1 726 SKDSQILRDQIAKLKSDLAATQGALAEAQASREALQEQLHQQSSHDNDTL-QIDQERLDlRTAKLKLDNEvrR---LKDECRSLSEGRIAAEKALDDEI 820
                 45667777777777777777666667777788888888888755554444.4444444327788888888431...33333333333333334566666 PP

      DUF812 340 eeleskieeleeeikklessikqve......eeleeekeeneelekevkl 383
                 e++ ++  +l++ei +l+++++  +      + le+ + + eel+++v+l
  CCE29888.1 821 EKAAAQEVKLRQEIVQLRTKMRSSMaaaplhQDLENAQHKIEELQQQVEL 870
                 66666666666666666665554331111113444444444444444443 PP

  == domain 7  score: -13.4 bits;  conditional E-value: 5
      DUF812  220 eqeweeeaneqglasrlteeeykkrkkeklqkrlaeqlrkaalkseeaessasksksdlaellsefseksetdslktkgsrfthaekl......... 307 
                  e++ ++e ++++ ++   ++e+ +   +   + +a+ l++ + + + ++ ++ +++++l +   ++++++++++           e+          
  CCE29888.1  813 EKALDDEIEKAAAQEVKLRQEIVQLRTKMRSSMAAAPLHQDLENAQHKI-EELQQQVELYQNSATARSSRRSND-----------EECdrdgldvma 897 
                  4455555555544333333333333333333333333333333333222.222333333333333322222222...........222223333333 PP

      DUF812  308 qftke...............ela..kkaeteeelkkkreeeleelq.eqi.eeleskieeleeeikklessikqveeeleeekeeneelekevklk. 384 
                  q+ ++               + a  +++++ +   ++ eeel+e + +qi  +  ++ +   +e+ +le+++ ++  +l+ ++++   +e++   + 
  CCE29888.1  898 QLRRDlsnyrqkeldylqqeT-AhrTEVKQLNLQIAELEEELHEAKiSQItRASPARGSDSYKEVTTLEKKLAETRRALDDLRSQSVDTEQQASHRl 993 
                  332224333433444443321.223444444444444455554432223303333555667789999999999999999999999988877765443 PP

      DUF812  385 kktlellpdaeeniekLqalveasaqrlvelakqWekhRvpl...ieeyrelkesksekekeaerkleeikklrekmkevaeelrqkeellkqLvae 478 
                  + +l+ l+dae +   L++++e+++++  e a+q e+    l   +++ ++ ++++   + +++++ + ++k ++++ +++++++q++el+++L+a 
  CCE29888.1  994 EELLNQLNDAEDQKLVLEEVLEEAREQADEAAAQHEETIHYLqhkLNKAERDRDAALASHVKTSKQGKHLRKSQAEIANLESDVQQQQELINRLTAT 1090
                  88999999****************************98776622256667777888888999********************************999 PP

      DUF812  479 leklpkdvsR 488 
                    +l ++ +R
  CCE29888.1 1091 EAALRRKLER 1100
                  8888888887 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3  18.1   2.2e-08   7.8e-05      36     136 ..     234     337 ..     229     356 .. 0.79
   2 !    9.7  18.1   0.00016      0.57      15     103 ..     354     436 ..     343     444 .. 0.78
   3 !   14.4  25.0   5.8e-06     0.021      30     179 ..     443     586 ..     438     590 .. 0.95
   4 ?    1.9  17.3     0.037   1.3e+02      26     128 ..     598     705 ..     595     726 .. 0.69
   5 ?    1.7  13.8     0.043   1.6e+02      96     168 ..     724     798 ..     715     808 .. 0.58
   6 ?   -0.4  23.6       0.2   7.1e+02      39     176 ..     813     942 ..     806     950 .. 0.88
   7 ?   -6.6  38.8         5   1.8e+04      44     206 ..     959    1125 ..     945    1150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.2e-08
  MscS_porin  36 kkkaeelqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqt...rperaqqqltearqrlqe 131
                 + +++ ++k +++a +el++ +q+l++lq       ++++++l le+L+++l++ ++++ +lq+ql q  ++  e++     +e + + l e  + ++e
  CCE29888.1 234 QRDLQRYKKHVASAERELDTYRQQLQELQTRVGRRQNDNDDRLRLEQLQRELNDKEARVNDLQRQLGQSHDEDDEIEKlreTIEDLESDLREKDRLITE 332
                 67899*************************************************************986666555555000555555555555555555 PP

  MscS_porin 132 irnrL 136
                   ++L
  CCE29888.1 333 RDDEL 337
                 55555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00016
  MscS_porin  15 qkallqdLeqalnlLdkidkskkkaeelqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaq 103
                   + +++Le+++n  ++ ++ k+ +e+lq++i++  ++++el++ +++        s+++ a+  leeL+ ++++ s     l++q+ +
  CCE29888.1 354 SRQRIAELEETQNHNEELEEAKETIEDLQTSIRQLEEQMDELKETTDNA------VSQKDRAERDLEELQEEMANKSVTTKGLSRQIEE 436
                 5566788888888888888888888888888888888888888888877......9999999999999999999998888887777665 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 5.8e-06
  MscS_porin  30 dkidkskkkaeelqkaiddaPkelrelqqeleal.qkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearq 127
                 ++ d+s ++ ++l+k +++a +  ++l+ + e+l +++ +++ k++  +++++eLe +ll++ ++   lqe+  +l ++ v++q+  e   ++  e rq
  CCE29888.1 443 EELDRSGQDYANLEKELAKANEDNEQLRSDMEELrTDSHNTQRKQHSHSTKIKELETELLTVADEKDLLQERYESLVAESVTYQQNAEHFENEVEELRQ 541
                 688999********************************************************************************************* PP

  MscS_porin 128 rlqeirnrLnstaaagealsqaqrtalqaelaaleaqieeleqellsnnnrq 179
                 +l e  +   +      +l++++r+++q e   l+++i  l+ e    +n+ 
  CCE29888.1 542 KLLEEKD--YAV-----ELEKDLRQQYQDEIDRLNDEITNLQAEVRERDNLY 586
                 *999888..444.....9**************************99999985 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.037
  MscS_porin  26 lnlLdkidkskkkaeelqkaiddaPkelrelqqeleal.....qkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaq 119
                 ++lL ++d+ ++ka  lq++id+  ++  +l+++  +l     ++++ ++++e   +  +++L+  l++++++l + +++l+  +++l+++q   ++  
  CCE29888.1 598 QALLSERDRAEEKAVGLQRTIDRLRETEGNLSNKETKLlkameSETERHKNEEAVLSRQISDLQDALETRQAHLVQSRNELSIVQDELRQTQIEYQTNV 696
                 689********************9999888887777775545555666666666666677777777777777777777777777777776665444444 PP

  MscS_porin 120 qqltearqr 128
                 ++  + + +
  CCE29888.1 697 NKVETLQNE 705
                 444444444 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.043
  MscS_porin  96 elqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrL..nstaaage.alsqaqrtalqaelaaleaqieel 168
                 +++++ + l +q+++l + ++  q +l+ea+   ++++ +L  +s+ ++++ ++ q++ ++  a+l  l+++++ l
  CCE29888.1 724 AASKDSQILRDQIAKLKSDLAATQGALAEAQASREALQEQLhqQSSHDNDTlQIDQERLDLRTAKL-KLDNEVRRL 798
                 455666666777777777777777777777777777777775333333444455555555433333.344444444 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.2
  MscS_porin  39 aeelqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLn 137
                  ++l + i++a ++  +l+qe+ +l         +  +++  + L q l++++ + +elq+q   +++++++ ++r +   +   +    ++++r++L+
  CCE29888.1 813 EKALDDEIEKAAAQEVKLRQEIVQL-------RTKMRSSMAAAPLHQDLENAQHKIEELQQQVELYQNSATARSSRRSNDEECDRDGLDVMAQLRRDLS 904
                 579999*******************.......44555677777899*********************************999999*************9 PP

  MscS_porin 138 staaage.alsqaqrtalqaelaaleaqieeleqellsnn 176
                 +   +++      q ta ++e++ l++qi+ele el  + 
  CCE29888.1 905 NY--RQKeLDYLQQETAHRTEVKQLNLQIAELEEELHEAK 942
                 99..4551445567799******************98775 PP

  == domain 7  score: -6.6 bits;  conditional E-value: 5
  MscS_porin   44 kaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrper.aqqqltearqrlqeirnrL... 136 
                  k +++  k+l+e ++ l+ l   +++ + e+ a+  leeL ++l+++++q + l+e l ++ +q+ e+  + e+ ++  + + +++  +  ++L   
  CCE29888.1  959 KEVTTLEKKLAETRRALDDL--RSQSVDTEQQASHRLEELLNQLNDAEDQKLVLEEVLEEAREQADEAAAQHEEtIHYLQHKLNKAERDRDAALash 1053
                  6788999*************..77788888889999******************9999999999999988876524555555555555555555322 PP

  MscS_porin  137 nstaaagealsqaqrtalqaelaaleaqieeleqellsnnnrqeLlklqrdl..lklriqqleqelqaLqel 206 
                   +t+++g+ l+++q    + e+   ++q   +++ +  +  r++L +++ +    +l  ++l++ +q Lq +
  CCE29888.1 1054 VKTSKQGKHLRKSQAEIANLESDVQQQQELINRLTATEAALRRKLERARSERaaFRLSAEKLQRDIQILQPQ 1125
                  3444556699999999999999999999999999999999999999999888224566789********976 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3  28.4   3.3e-05      0.12     141     264 ..     234     372 ..     212     374 .. 0.86
   2 !   10.4  27.6   5.9e-05      0.21     142     273 ..     372     499 ..     366     510 .. 0.81
   3 ?    2.9  14.4     0.011        40     157     245 ..     496     581 ..     487     587 .. 0.66
   4 !    5.9  22.0    0.0014         5     140     280 ..     575     711 ..     574     718 .. 0.89
   5 !    7.3  11.5   0.00053       1.9     173     279 ..     696     806 ..     691     809 .. 0.75
   6 !    3.6  18.9    0.0073        26     161     285 ..     812     942 ..     809     952 .. 0.80
   7 ?    1.5  15.1     0.031   1.1e+02     169     258 ..     961    1047 ..     953    1050 .. 0.87
   8 !    3.8  18.7    0.0062        22     156     259 ..    1012    1121 ..    1011    1128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.3e-05
        Spc7 141 kegleenlegleedkelLekqeeeldellpeleeeka.........eleeeleklqeaaeeles.....id.keeLeelreelaelkaeieekkkelae 224
                 +  l++  + + + +++L+  +++l+el  ++ ++++         +l++el++ ++++++l+       d  +e+e+lre++++l+++++ek + ++e
  CCE29888.1 234 QRDLQRYKKHVASAERELDTYRQQLQELQTRVGRRQNdnddrlrleQLQRELNDKEARVNDLQRqlgqsHDeDDEIEKLRETIEDLESDLREKDRLITE 332
                 5667777777888888888888888888888877777777777777999999999998888877777775559************************** PP

        Spc7 225 lqeqleeleekieelkeqkseleeeiaeaervleeckgws 264
                 + ++le+l+ ++ +++++ +e +++iae e++++ +++ +
  CCE29888.1 333 RDDELEDLKVQVGAAEDRVRESRQRIAELEETQNHNEELE 372
                 ********************************99988765 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 5.9e-05
        Spc7 142 egleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelk 240
                 e+++e++e+l++  ++Le+q++el+e  ++ +++k++ e+ le+lqe+ ++ +  +k   +++ e+l +l++e+++  +++a+l+++l++ +e+ e+l+
  CCE29888.1 372 EEAKETIEDLQTSIRQLEEQMDELKETTDNAVSQKDRAERDLEELQEEMANKSVTTKGLSRQIEERLGRLQEELDRSGQDYANLEKELAKANEDNEQLR 470
                 568999*****************************************8888555556666789999999999999999999999999999999999998 PP

        Spc7 241 eqkseleeeiaeaervleeckgwsesevsrlke 273
                 + ++el+++  + +r    ++++ ++ +++l++
  CCE29888.1 471 SDMEELRTDSHNTQR----KQHSHSTKIKELET 499
                 888888877775554....44455555555555 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.011
        Spc7 157 lLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelael.kaeieekkkelaelqeqleeleekieelkeqkse 245
                 +Le +   + + ++ l+e++++l +e  + q+ ae +e+    e+eelr++l e  +  +e  k+  ++ q+++++l+++i++l+++ +e
  CCE29888.1 496 ELETELLTVADEKDLLQERYESLVAESVTYQQNAEHFEN----EVEELRQKLLEEkDYAVELEKDLRQQYQDEIDRLNDEITNLQAEVRE 581
                 455555556666677778888888888888887777666....77777777644404455555555667788888888888877776655 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0014
        Spc7 140 LkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekiee 238
                 L+ +++e+ +  ++d+e+ e++++ l +  ++ ee+   l++++++l+e + +l++ + + L+++ +e +++k+e + +++++++lq+ le+ ++ + +
  CCE29888.1 575 LQAEVRERDNLYDNDSEKWENEKQALLSERDRAEEKAVGLQRTIDRLRETEGNLSNKETKLLKAMESETERHKNEEAVLSRQISDLQDALETRQAHLVQ 673
                 66777788888899************************************************************************************* PP

        Spc7 239 lkeqkseleeeiaeaervleeckgwsesevsrlkeevkalee 280
                  +++ s +++e+++ +  ++     + + v++l++e ++l +
  CCE29888.1 674 SRNELSIVQDELRQTQIEYQ----TNVNKVETLQNEIEMLRS 711
                 ***********996654444....566777788888777766 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.00053
        Spc7 173 eeekaeleeeleklqeaaeeles.....idkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwses 266
                 +++ ++l++e+e+l+++ +   +       +++ + lr+++a+lk+++++ +  lae q+ +e+l+e++ + ++  +    +i +++  l+  k   ++
  CCE29888.1 696 VNKVETLQNEIEMLRSKPTIQGTpgrinAASKDSQILRDQIAKLKSDLAATQGALAEAQASREALQEQLHQQSSHDN-DTLQIDQERLDLRTAKLKLDN 793
                 56777788888888884332222334333455567799999999999999999999999999999999977755555.5567888888888999999** PP

        Spc7 267 evsrlkeevkale 279
                 ev+rlk+e ++l 
  CCE29888.1 794 EVRRLKDECRSLS 806
                 *******999886 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.0073
        Spc7 161 qeeeldellpeleeekaeleeeleklqe.aaeelesid.keeLeelreelaelkaeieekkkelae...lqeqleeleekieelkeqkseleeeiaeae 254
                  e+ ld+  ++  +++ +l++e+ +l++ ++ ++++   +++Le+++++++el++++e  ++  +    ++++ ee + +  ++ +q ++  ++ +++e
  CCE29888.1 812 AEKALDDEIEKAAAQEVKLRQEIVQLRTkMRSSMAAAPlHQDLENAQHKIEELQQQVELYQNSATArssRRSNDEECDRDGLDVMAQLRRDLSNYRQKE 910
                 578899999999***************955666777778******************976665544000445556666666778888888889999999 PP

        Spc7 255 rvleeckgwsesevsrlkeevkaleel.tgwk 285
                   + +++   ++ev++l+ +  +lee+ ++ k
  CCE29888.1 911 LDYLQQETAHRTEVKQLNLQIAELEEElHEAK 942
                 99999*******************97614455 PP

  == domain 7  score: 1.5 bits;  conditional E-value: 0.031
        Spc7  169 lpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervle 258 
                  +  le++ ae ++ l++l++++ + e+  + +Leel ++l++++ +   +++ l+e +eq +e +++ ee+   ++ l+ ++++aer ++
  CCE29888.1  961 VTTLEKKLAETRRALDDLRSQSVDTEQQASHRLEELLNQLNDAEDQKLVLEEVLEEAREQADEAAAQHEET---IHYLQHKLNKAERDRD 1047
                  567999999*********************************99999999999999999999888887655...8888888888888765 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.0062
        Spc7  156 elLekqeeeldellpeleeekaeleeeleklqe.....aaeelesid.keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksel 246 
                  e+Le+ +e++de+  + ee    l+++l+k ++      a  +++++  + L++ + e+a+l+++++++++ +++l++  ++l+ k+e ++++++ +
  CCE29888.1 1012 EVLEEAREQADEAAAQHEETIHYLQHKLNKAERdrdaaLASHVKTSKqGKHLRKSQAEIANLESDVQQQQELINRLTATEAALRRKLERARSERAAF 1108
                  789**************************9999766664445555664789********************************************** PP

        Spc7  247 eeeiaeaervlee 259 
                  +   ++ +r ++ 
  CCE29888.1 1109 RLSAEKLQRDIQI 1121
                  ***9999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3473  (0.193709); expected 358.6 (0.02)
Passed bias filter:                      721  (0.0402142); expected 358.6 (0.02)
Passed Vit filter:                       297  (0.0165653); expected 17.9 (0.001)
Passed Fwd filter:                       177  (0.00987227); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 6.05u 0.42s 00:00:06.47 Elapsed: 00:00:01.13
# Mc/sec: 3553.41
//
Query:       CCE29889.1  [L=420]
Description: probable caspase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-63  213.1   0.0    8.8e-63  212.5   0.0    1.2  1  Peptidase_C14  Caspase domain


Domain annotation for each model (and alignments):
>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.5   0.0   4.9e-67   8.8e-63       1     242 [.     118     402 ..     118     404 .. 0.91

  Alignments for each domain:
  == domain 1  score: 212.5 bits;  conditional E-value: 4.9e-67
                    EEEEEEECSTTSSTCC-STTHHHHHHHHHHHHHHHTTEEEEEEEGGEES.......-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEEET..... CS
  Peptidase_C14   1 kkAliIginnYpgtkaeLrGcanDaermaklLvkrlgFevenililtdd.......ptgknirkalkwlvksadhspgDslvvhysGHGtrvpae. 88 
                    +kAl+Igin Y g++ +LrGc+nD+++m+  L +++g++ e+++iltdd       pt++ni++a++wlvk+a+  p+Dsl++hysGHG+++++  
     CCE29889.1 118 RKALLIGIN-YFGQRGQLRGCINDVRNMTSYLAEHFGYRREDMVILTDDqqnpmsqPTKQNILRAMHWLVKDAR--PNDSLFFHYSGHGGQTKDLd 210
                    79*******.997877**********************************************************..**************877778 PP

                    .........EEECTTC..SSEEEHHHHHHTTSTTTHGGGTTS-EEEEEESES.SSBCBEEEEEEES-SSS.......................... CS
  Peptidase_C14  89 .........civpvdv..nsliqdddirdlfggdklpslagkpktiiidaCr.gglldkgiekdtsptnk.......................... 146
                             +i+pvd+  +++i+dd++++++ + +l+ ++  ++t+i+d+C+ g++ld ++  +t    k                          
     CCE29889.1 211 gdeadgydeVIYPVDFrlTGHITDDEMHRIM-VTPLQGGV--RLTAIFDSCHsGTALDLPYIYSTQGILKepnlakeagqgllsvissysqgdlgg 303
                    99**********************9999999.89******..***************888888888777788888888888889999999999999 PP

                    .......HCCCHCHHHHHHCSHHCEEECTTTSEEEEESSSTTBSCEEETTTEE...HHHHHHHHHH.HHHTTTSBHHHHHHHHHHHHCCTTTCTTS CS
  Peptidase_C14 147 .......feedssskekkpekqslsklpseadvlllsgcqddqtSadgsengs...aftqalqkvl.eekggkislkellnkvrkrlkslkkkngy 231
                           f  ++  + +++ ++ l + +s+adv++lsg++ddqtSad++  ++   a+++a+  +l ++++  +s+ +lln +r++l +    ++y
     CCE29889.1 304 vatnimsF-LKKATSGDDAYARTLATKTSPADVIMLSGSKDDQTSADATIASQatgAMSWAFMNALkKNPQ--QSYVQLLNSIRDEL-A----TKY 391
                    99998854.44556778889999999****************************************44444..6*************.3....46* PP

                    BEEEEEEEEES CS
  Peptidase_C14 232 kqrPglssndl 242
                    +q+P+ls+++ 
     CCE29889.1 392 TQKPQLSCSHP 402
                    ********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3165.73
//
Query:       CCE29890.1  [L=224]
Description: uncharacterized protein CPUR_03738 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-12   45.8   0.0      9e-12   45.3   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.4e-09   38.0   0.0    3.7e-09   36.6   0.0    1.7  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    4.5e-08   33.4   0.0    6.1e-08   32.9   0.0    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.018   15.2   0.0      0.034   14.3   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
      0.058   13.4   0.1       0.23   11.4   0.1    2.0  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   2.5e-15     9e-12      13      75 ..     113     192 ..      89     193 .. 0.72

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 2.5e-15
                     EEEEEEEEEEES...TCTEE...EEE-GGGTTSSHHHHHHHHTT.....SEEE...EEEEEE..THH.......HHHHHHHHTTEE CS
  Acetyltransf_7  13 kivGfialslld...aeitr...laVdpeyrgkGiGraLleaae.....kgii...leqlel..nae.......kaikfYeklGFe 75 
                     ++vG++ ++ l+   +   +   laVdp+yrg+G+Gra++++ae     kg++   +   el  +++       + +++Y++lG++
      CCE29890.1 113 QPVGCVFIKQLSarlG---NfgmLAVDPKYRGQGLGRAMIDFAEnfcrdKGCTamqM---ELlvTTNfehvvksRMQEWYRRLGYQ 192
                     6789998888885544...4455******************8344666788765442...222222122445557788*******8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0     1e-12   3.7e-09      27     109 ..      99     194 ..      73     203 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1e-12
  Acetyltransf_10  27 eegealllvaeeggkivGvielrdgs....hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnas........pyavpfYeklGFk 107
                      ++++ + ++ae + ++vG++ +++ s      ++l+Vdp+yrgqG+g+a+++++e+ ++++g    ++++  +        +  ++ Y++lG++
       CCE29890.1  99 ADKSQTSHAAEPSLQPVGCVFIKQLSarlgNFGMLAVDPKYRGQGLGRAMIDFAENFCRDKGCTAmQMELLVTtnfehvvkSRMQEWYRRLGYQ 192
                      477888999999********77666667779***************************998877775544333001111113567788888888 PP

  Acetyltransf_10 108 av 109
                      +v
       CCE29890.1 193 VV 194
                      87 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   1.7e-11   6.1e-08      43      99 ..     113     166 ..      58     191 .. 0.69

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.7e-11
                     EEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEE CS
  Acetyltransf_1  43 eliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivl 99 
                     +++G++ +++      + +    laV+p+yrg+GlG+a+++ +e ++r++g++++  
      CCE29890.1 113 QPVGCVFIKQLSA---RLGNFGMLAVDPKYRGQGLGRAMIDFAENFCRDKGCTAMQM 166
                     4777775555555...7888889*****************************98754 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   9.6e-06     0.034      31      58 ..     134     161 ..     124     165 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.6e-06
  Acetyltransf_CG  31 eVpeelrGkGiAkkLvkaalddareegl 58 
                       V++++rG+G+++++++ a ++ r++g 
       CCE29890.1 134 AVDPKYRGQGLGRAMIDFAENFCRDKGC 161
                      69********************999986 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   6.4e-05      0.23      20      45 ..     126     151 ..     119     197 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.4e-05
                 TTSSEEEEEE-GGG-SSSHHHHHHHH CS
        FR47  20 dggelgalqvlpehrrrGlgsrlvka 45 
                   g  g+l v+p+ r++Glg+ ++  
  CCE29890.1 126 RLGNFGMLAVDPKYRGQGLGRAMIDF 151
                 56999***************998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1862.70
//
Query:       CCE29891.1  [L=168]
Description: uncharacterized protein CPUR_03739 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.006   16.6   0.0      0.018   15.0   0.0    1.7  1  DUF5051   3' exoribonuclease, RNase T-like
  ------ inclusion threshold ------
      0.013   16.1   0.0        1.2    9.7   0.0    2.1  2  RNase_T   Exonuclease
       0.17   10.5   1.3       0.21   10.2   1.3    1.0  1  Cnd2      Condensin complex subunit 2


Domain annotation for each model (and alignments):
>> DUF5051  3' exoribonuclease, RNase T-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.1e-06     0.018      76     162 ..      15     155 ..       4     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.1e-06
     DUF5051  76 kdalqaleeFlekslkvwangasfDlviLraafel........................................................lipwkywn 118
                 + a++a+++F+  ++ v+++ga+ Dl +Lr + ++                                                        +      +
  CCE29891.1  15 DAARKAVHDFVGPKTVVIGHGANGDLMCLRWVHRVivdtllvesqrrqlelftaealkhwpsadkqqegadagegggdddgedegegegedN-----GK 108
                 67899******77899****************888**************************************************9988763.....56 PP

     DUF5051 119 drdvrtlvala....pelekgeekkreipfegvkHnALaDAkhqakav 162
                 d++ r+l++ +    ++ + +++ +r i++ g  H++L+DA++ + ++
  CCE29891.1 109 DKKSRALRKESglslKA-LTLKRLNRVIQIPGRGHDSLEDAQATRDLL 155
                 77777777666566444.5555677889999**********9987765 PP

>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0074        44      73     108 ..      17      52 ..      13      78 .. 0.82
   2 ?    9.7   0.0    0.0002       1.2     132     163 ..     124     153 ..     109     155 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0074
                 HHHHHHHHHHHHTCCCETTTCEEEESSHHHHHHHHH CS
     RNase_T  73 vleefkellrklallvahnaafdvgflraadkrilk 108
                 + +++++++++++++++h+a+ d+ +lr+  + i+ 
  CCE29891.1  17 ARKAVHDFVGPKTVVIGHGANGDLMCLRWVHRVIVD 52 
                 678999**********************99988754 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0002
                 HCHHHHHHHHHTTCHSSSSTSSHHHHHHHHHH CS
     RNase_T 132 artsldklaeklgleedgraHrAldDaeatak 163
                 +  +l+ l++++++++ g  H++l+Da+at  
  CCE29891.1 124 KALTLKRLNRVIQIPGRG--HDSLEDAQATRD 153
                 33799************9..********9965 PP

>> Cnd2  Condensin complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.3   3.6e-05      0.21     161     217 ..      79     133 ..      71     137 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 3.6e-05
        Cnd2 161 kkdneeeedee.egdeeeeeeegedgeekkkkkkKkqrsseatlaksfeslqlkklel 217
                 k+++ ++++e+  +d+ e+e ege +++ k kk ++ r+ e+    s+++l+lk+l++
  CCE29891.1  79 KQQEGADAGEGgGDDDGEDEGEGEGEDNGKDKKSRALRK-ES--GLSLKALTLKRLNR 133
                 232222333330333333344444444334444555555.43..44678888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1447.83
//
Query:       CCE29892.1  [L=633]
Description: uncharacterized protein CPUR_03740 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4528.69
//
Query:       CCE29893.1  [L=533]
Description: uncharacterized protein CPUR_03741 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.93    9.5   0.0    2.2  3  Levi_coat  Levivirus coat protein


Domain annotation for each model (and alignments):
>> Levi_coat  Levivirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.086   1.5e+03      72      99 ..     211     238 ..     208     252 .. 0.82
   2 ?    9.5   0.0   5.2e-05      0.93      75     116 ..     286     327 ..     266     332 .. 0.84
   3 ?   -3.5   0.0      0.53   9.5e+03      65      93 ..     458     486 ..     455     487 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.086
                 EEEEETTEEEEEEEEEEEEEEEEEEETT CS
   Levi_coat  72 asqtvsGvedPvvarrayldvelsitiy 99 
                 +  t sG   P+  r++ l+  + +  y
  CCE29893.1 211 CMRTSSGASMPAHYRQSLLNAFIKFVAY 238
                 56799*************9998888777 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 5.2e-05
                 EETTEEEEEEEEEEEEEEEEEEETTS-HHHHHHHHHHHHHHT CS
   Levi_coat  75 tvsGvedPvvarrayldvelsitiyatdeerelvvkelkall 116
                  ++ v+ Pv+a +a + ++++i+   + +  +l ++ + al+
  CCE29893.1 286 RAGIVCGPVAAVSARASIDFTIPNVEAAQSLDLAREMVAALI 327
                 46789********************99999999999888887 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.53
                 EEEEEEEEEEEETTEEEEEEEEEEEEEEE CS
   Levi_coat  65 kvkvqkvasqtvsGvedPvvarrayldve 93 
                 +v+v+        G  +P +++r++ +ve
  CCE29893.1 458 RVRVPTRLLEVLDGSPEPDATKRSWGKVE 486
                 6777777778889999999**99998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4024.10
//
Query:       CCE29894.1  [L=352]
Description: uncharacterized protein CPUR_03742 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-09   36.2   0.0    5.4e-09   35.5   0.0    1.4  1  Whi5      Whi5 like


Domain annotation for each model (and alignments):
>> Whi5  Whi5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0     3e-13   5.4e-09       1      25 []      28      52 ..      28      52 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 3e-13
        Whi5  1 kLktRLqlAmyKvqtGwedlsLdel 25
                +L+ RL+lA++K+++Gwe lsLd +
  CCE29894.1 28 RLQDRLALAQFKAKHGWEGLSLDSI 52
                69*********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2750.99
//
Query:       CCE29895.1  [L=519]
Description: uncharacterized protein CPUR_03743 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-99  332.1   0.0    1.2e-52  179.0   0.0    2.1  2  Metallopep     Putative peptidase family
    1.6e-05   24.9   0.0    3.4e-05   23.8   0.0    1.5  1  Jacalin        Jacalin-like lectin domain
  ------ inclusion threshold ------
      0.043   12.8   0.1       0.11   11.5   0.0    1.6  2  Peptidase_M66  Peptidase M66
      0.097   12.3   0.0       0.17   11.5   0.0    1.3  1  Astacin        Astacin (Peptidase family M12A)


Domain annotation for each model (and alignments):
>> Metallopep  Putative peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.6   0.0   5.5e-48   2.5e-44      92     225 ..       2     137 ..       1     143 [. 0.96
   2 !  179.0   0.0   2.6e-56   1.2e-52     274     426 ..     143     287 ..     140     288 .. 0.96

  Alignments for each domain:
  == domain 1  score: 151.6 bits;  conditional E-value: 5.5e-48
  Metallopep  92 qnppvhlvilvakdsdgtfdapeaklekeegndldaaikklrlaarLlQaftaeklrrkglgrrtFrleeevetdtlvq...esetlrsevkvhvlrse 187
                 ++pp++l+i+vakds++tfdap++++e +egn+ld+a++k+r+aa+L+Qaftae+++++ lgrr+Fr+eee+  +t+++   e+ tlrse+++h++rs+
  CCE29895.1   2 NAPPLQLAIIVAKDSPETFDAPPSRVE-REGNGLDTAVRKFRMAAYLWQAFTAEQMWKQRLGRRSFRFEEEWGLGTANHrdrEHGTLRSEARIHIIRSD 99 
                 689************************.*************************************************99999999************** PP

  Metallopep 188 ktvaelrdldlAQQnskakdedeLfqiaaealkksgep 225
                 ktvae+r l+ AQ  s+a++++ Lf+ a + ++ +++ 
  CCE29895.1 100 KTVAEIRGLNNAQALSEATEKNLLFKLAVDTVNGHFKT 137
                 ********************************999876 PP

  == domain 2  score: 179.0 bits;  conditional E-value: 2.6e-56
  Metallopep 274 swPssleevvpafldatrvdtaevanDsnergtywealaitlGAflHEiGHllglpHqedGvmlrdydalnrsfttreaeskrtkskgkrkvlpkeect 372
                 ++Ps+leev p+f+d+t++dt++v n+ +e+g++we+++ ++GA+lHE+GHl+g+pHqe+Gvm +dy  +nrsf+ rea+s+rtkskg + v p++ec 
  CCE29895.1 143 TYPSTLEEVAPSFTDCTPIDTNYVSNEGSEAGSSWEVANLGIGAHLHETGHLFGCPHQESGVMQKDYIVFNRSFVPREAYSTRTKSKG-GLVQPADECG 240
                 8***************************************************************************************.********** PP

  Metallopep 373 wsrldalrfryhpsfalpgdtsskpsdenkkklskpsvypveneevliksesgi 426
                 w+rld+lrfr hp f+lp+d  ++ +d       +++++++e+++v++++ +gi
  CCE29895.1 241 WHRLDCLRFRAHPAFRLPNDAPRNADD-------SVQAFAMEGGTVIATAMTGI 287
                 ********************6666665.......88999999999999999887 PP

>> Jacalin  Jacalin-like lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.6e-09   3.4e-05       9     129 ..     401     515 ..     396     519 .] 0.81

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 7.6e-09
                 -CEECEEEEEEESSSEEEEEEEEEETTSEE-EEEEEEEETTBSEEEEEETT.T--EEEEEEEEEEESSSEEEEEEEEEEETTS-EEEEEC...--SEEE CS
     Jacalin   9 ydgvrkvyvgqgedgiayikfeYvkaggkvegdehGkkgllgteefeidyp.dEyitsVegtydkvsvesevitsLtfkTnkgrtselfg..tksgtkf 104
                 +d+v   +++++++  + ++f Y+++  +  g+++ +  +   ++f++d    Ey+  + +           i+++++ T+ gr s++fg  + ++ + 
  CCE29895.1 401 TDKVMSQVIAYHNSTLHGLEFVYDDNTTQLLGEKREPDAS---QTFDFDVRrGEYLSGLLVRAG------SQIEGIQLLTSLGRKSPVFGnaRGGTAHN 490
                 688999999****************877666666666666...5555555558***99988877......58******************743344455 PP

                 EEE-SSEEEEEEEEEESSSEEEEEE CS
     Jacalin 105 sleekgkkivGFhGragnllnalGv 129
                 +++  g +i G  G++g+++++l v
  CCE29895.1 491 VIPPRGYSICGISGSCGSWVDNLSV 515
                 6777*****************9977 PP

>> Peptidase_M66  Peptidase M66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.4e-05      0.11     169     221 ..     163     210 ..      82     217 .. 0.67
   2 ?   -2.8   0.0      0.53   2.4e+03     213     250 ..     402     439 ..     391     443 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.4e-05
  Peptidase_M66 169 GkyanghGGlgggssGivtgdatltgefiHEqGHalGLpHylageaaskgsyp 221
                     +y  + G  +g+s  ++ +     g  +HE+GH +G pH  +g    ++ y+
     CCE29895.1 163 TNYVSNEGSEAGSSWEVANL---GIGAHLHETGHLFGCPHQESGV--MQKDYI 210
                    45555566666665553333...568899***********98883..334554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.53
  Peptidase_M66 213 eaaskgsypyaegsllgseWGyDanhneflsnllakts 250
                    ++  +    y+++ l g e  yD n  ++l+    + +
     CCE29895.1 402 DKVMSQVIAYHNSTLHGLEFVYDDNTTQLLGEKREPDA 439
                    555666778999999999999**999999998776665 PP

>> Astacin  Astacin (Peptidase family M12A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.8e-05      0.17      80     120 ..     184     224 ..     162     236 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHHHTB--GGGSTTGGGTEEE-GGGB-TT-GGG CS
     Astacin  80 lgiivHElmHalGffHeqsRtdrdeyvsinkeniekgqeen 120
                 +g   HE++H  G  H++s   + +y+ +n++ + +++++ 
  CCE29895.1 184 IGAHLHETGHLFGCPHQESGVMQKDYIVFNRSFVPREAYST 224
                 67789*****************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3678.33
//
Query:       CCE29896.1  [L=245]
Description: probable CHO1-CDP-diacylglycerol serine O-phosphatidyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-14   54.0   0.5    5.4e-14   52.7   0.5    1.7  1  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.5     3e-18   5.4e-14       2      66 .]      50     122 ..      49     122 .. 0.91

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 3e-18
                      -HHHHHHHHHHHHHHHHHGGGS-H..........HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf   2 lPnaiTllrlllsvlailllltyyp........lvlailllliasltDalDGklARrlnqvstlGkllDslaD 66 
                      l+++iTl++ +++v++++  l y          ++la++ll +  ++D+lDG++AR++n++s +G+ lDslaD
       CCE29896.1  50 LADLITLMNGFCGVMSVFSSLRYCLsdgssyyqVWLALALLPFGLFFDFLDGRVARWRNKSSLMGQELDSLAD 122
                      789**************86655555*******9999999999******************555*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1869.62
//
Query:       CCE29897.1  [L=860]
Description: related to transcription factor Ask10p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-05   25.4   0.1    3.6e-05   24.2   0.1    1.7  1  PH        PH domain
  ------ inclusion threshold ------
      0.095   10.6   0.2       0.13   10.1   0.2    1.1  1  Prominin  Prominin


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1     4e-09   3.6e-05       3     103 ..     429     527 ..     427     529 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4e-09
                 EEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSS...TEEEEEEESSHHHHHHHHH CS
          PH   3 keGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverng...srtyllqasseeerkeWik 98 
                 + G L +k++  k s+   w+vL+++ l  +k+   +k+  p +s+ l + +  ++  +++++  ++f+l+  +++     +t++++a+s + + +W++
  CCE29897.1 429 RAGLLERKSKYLK-SYTAGWYVLSTTHLHEFKSA--DKAQAPIMSLYLPEQKLGSH--SSEGGSSNKFVLKGRQTGTmhrGHTWVFRAESHDTMMAWYE 522
                 7799999999999.********************..89999999999999999987..88**********66655556546****************** PP

                 HHHHH CS
          PH  99 aiqsa 103
                 +i+++
  CCE29897.1 523 DIKAL 527
                 **976 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   1.5e-05      0.13     636     708 ..     204     291 ..     183     301 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 1.5e-05
    Prominin 636 lanelsngk...............knlkqslkneaqdlraiqqelvlplessvkklkksvkkldeensdlqesikkllaaveraenfl 708
                 +an++s+                 +n +++  +ea++ ++i+++ +l l+ + ++l +++k++++ + d+++s+++ ++a  +a   l
  CCE29897.1 204 VANNISTPPqflrsagiddalqflRNYHKAAIHEANKAKEIEEDVILALTGLRSDLSQKIKEIKNLSGDFKNSVDREMDATAKAVRAL 291
                 44444333345555557777777789999999******************************************99988887776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5982.57
//
Query:       CCE29898.1  [L=511]
Description: related to Orc3p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-50  171.2   2.9    1.3e-50  171.2   2.9    1.8  3  DUF2013   Protein of unknown function (DUF2013)


Domain annotation for each model (and alignments):
>> DUF2013  Protein of unknown function (DUF2013)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.68   1.2e+04      54      71 ..      76      93 ..      75      95 .. 0.75
   2 ?   -3.3   0.1      0.53   9.6e+03      60      73 ..     143     156 ..     124     173 .. 0.53
   3 !  171.2   2.9     7e-55   1.3e-50       2     138 .]     192     336 ..     191     336 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.68
     DUF2013 54 llNReedlvlqllilklL 71
                ++NR++d v + +i  lL
  CCE29898.1 76 IFNRNKDYVRTQIIHSLL 93
                589999988877777666 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.53
     DUF2013  60 dlvlqllilklLyl 73 
                 d+ l+ ++l+l+y 
  CCE29898.1 143 DPLLHRILLQLMYE 156
                 33333334444443 PP

  == domain 3  score: 171.2 bits;  conditional E-value: 7e-55
     DUF2013   2 delnysviklllalneqfmvasles........kelenkvlkvlsekksssktfgenlilllNReedlvlqllilklLyllfttsetaelfYtnDlkVL 92 
                 d+++y  i++ll+lneq+m+as+++        + l+n+++k ls +   ++tfgen+illlNRe++++lqllilklLyllftt++t+e+fYtnDl+VL
  CCE29898.1 192 DPYHYPTIRVLLVLNEQYMMASTDTgldsimhpEPLTNRIVKCLSLHGPLYRTFGENVILLLNRETETSLQLLILKLLYLLFTTKATYEYFYTNDLQVL 290
                 789*******************999*******99***************************************************************** PP

     DUF2013  93 vDviiRelsdlsdeeeeklrhtyLrvlhpllkntqlsee.kykreel 138
                 +DviiR+l dl ++e+ +lrhtyLrv++pll +tql++  +ykree+
  CCE29898.1 291 LDVIIRNLMDL-PDEKISLRHTYLRVMYPLLAHTQLNQPpHYKREEI 336
                 ***********.8*************************999***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3852.87
//
Query:       CCE29899.1  [L=639]
Description: probable LRO1-a lecithin cholesterol acyltransferase-like gene, mediates diacylglycerol esterificati [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.4e-110  368.0   0.2   7.7e-110  367.7   0.2    1.0  1  LCAT      Lecithin:cholesterol acyltransferase


Domain annotation for each model (and alignments):
>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.7   0.2  4.3e-114  7.7e-110       1     390 [.     172     598 ..     172     600 .. 0.93

  Alignments for each domain:
  == domain 1  score: 367.7 bits;  conditional E-value: 4.3e-114
        LCAT   1 yFrkelWldldmllslvvd..cwlknlelvldkstglqedapgvkiRadqGfeaieyldkskiagkqyeiwkklvknlvkiGyeknktvvaapYDWRls 97 
                 yFrk+lW++++m+++lv+d   w k  +++ldk+tgl  d+ gvk+Ra+qGf a++++    i+g  y+iw+k+++nl+ iGy + +  + a+YDWRls
  CCE29899.1 172 YFRKRLWGSWTMMKALVMDkeQWKK--HVMLDKKTGL--DPDGVKLRAAQGFDATDFF----ITG--YWIWNKIFENLATIGYDPTN-SFTAAYDWRLS 259
                 9******************999999..**********..*******************....***..******************99.89999****** PP

        LCAT  98 ...leerdkYfskLkelieealklsgkkvvliaHSmGnllvlyflkwveaea.......WvdqhikafislgapllGsvkavkallsGenkgipvlsel 186
                    le rd+Yfs+Lk+ ie a + +g kvvl +HSmG+++v+yf++wv++++       Wvd+hi+++i++++ +lG+vk + a+lsGe+ ++++l+ +
  CCE29899.1 260 yanLETRDRYFSRLKSYIESAVEYDGVKVVLASHSMGSQVVFYFFHWVQSDQggrggedWVDRHIDSWINISGCMLGAVKDLTAVLSGEMRDTAQLNAF 358
                 ***************************************************9*********************************************** PP

        LCAT 187 tlrvlsksfsss............lsllPkgeevlwkdvawpsdeiliqtpsinltegalvrf........fsdevdlkdllsftlnvlagwvmvkvae 265
                 ++++l+k+ s+             +s+lP g++ +w+d+ w++d+  +qt    +++ga  +f         + ++++++ l+f+ n +++w++ +v +
  CCE29899.1 359 AIYGLEKFLSKEeraemframpgiSSMLPMGGNAVWGDLDWAPDDQPNQT----FSYGATLNFkvganwtaPDRNLTVESSLDFLFNATEDWYQDHVKK 453
                 ***********9*********************************77777....778888888888886544559************************ PP

        LCAT 266 dldgglsklekelkk..lkkkkyvkeeetklpeaPgvkvyciygvglptergyvyapekkssp..lnyilsd..idyeteesivskdGdetvpkeslel 358
                  +++g++++ +e++       k++++ e +lp+aP+ k+yc ygvg+pter+y+y   +++ +  l  i+    +++e+++++v+++Gd+tv++ s+  
  CCE29899.1 454 SYSHGVARTAAEVEAneKDALKWINPLESRLPNAPNLKIYCFYGVGKPTERAYYYRAPDQPTTtkLKIIIDTavTEGEVDHGVVMGEGDGTVNLLSTGY 552
                 *************995344459********************************987666554114444433225678999***************997 PP

        LCAT 359 .Ckk.Wqd...nkakvkvtvaelkeek.........rsaehvellv 390
                  C++ W+    n+ + ++tv+e+++e+         + a+hv++l+
  CCE29899.1 553 mCNRgWHMkryNPGNSQITVVEMPHEPerfnprggpKTADHVDILG 598
                 6*****99999*********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4417.26
//
Query:       CCE29900.1  [L=185]
Description: probable MAK3-N-acetyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-19   69.6   0.0    3.2e-19   69.3   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    8.5e-11   41.9   0.0    1.1e-10   41.5   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    6.7e-10   39.3   0.0    9.2e-10   38.8   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.8e-09   37.5   0.0    2.7e-09   36.9   0.0    1.3  1  FR47             FR47-like protein
      5e-07   29.5   0.0    6.4e-07   29.2   0.0    1.2  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
    1.7e-06   28.8   0.0    1.9e-06   28.6   0.0    1.2  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    0.00043   20.4   0.0    0.00069   19.7   0.0    1.3  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
     0.0054   16.8   0.0       0.01   15.9   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.078   13.0   0.0       0.27   11.2   0.0    1.9  2  Acetyltransf_13  ESCO1/2 acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   1.6e-22   3.2e-19      29     117 .]      52     146 ..      27     146 .. 0.82

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 1.6e-22
                     HSTTCEEEE..EEETTEEEEEEEEEEEET....TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  29 sleaegllv..aeedgeliGfisllkipd....ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                      + a  +++     d  l+G + ++   +    + ++++yi  laV +++rg+G+++aL+e++++ + ++++++ivl++ee+n++ai+lYe+lGF
      CCE29900.1  52 CQWAQLCFMalNPSDSSLVGVVVCKLEVHsshsPPTRRGYIAMLAVESSFRGHGIATALVEKAIDVMMKRQADEIVLETEETNVPAIKLYERLGF 146
                     33444333325556678****************99***********************************************************9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   5.7e-14   1.1e-10      50     110 ..      88     150 ..      53     164 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 5.7e-14
  Acetyltransf_10  50 dgshisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavg 110
                      ++++i++l+V++++rg Gi++aL+e++++ + k++  +  l+ ++++  a+++Ye+lGF + +
       CCE29900.1  88 RRGYIAMLAVESSFRGHGIATALVEKAIDVMMKRQADEiVLETEETNvPAIKLYERLGFLRSK 150
                      455***************************888888878********************8765 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   4.6e-13   9.2e-10      15      74 ..      70     146 ..      43     148 .. 0.70

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 4.6e-13
                     EEEEEEEEES..........TCTEEEEE-GGGTTSSHHHHHHHH.......TT.SEEEEEEEEETHH.HHHHHHHHTTE CS
  Acetyltransf_7  15 vGfialslld..........aeitrlaVdpeyrgkGiGraLlea.......ae.kgiileqlelnae.kaikfYeklGF 74 
                     vG ++++l+           ++i  laV  ++rg+Gi++aL+e        ++   i le +e + + +aik+Ye+lGF
      CCE29900.1  70 VGVVVCKLEVhsshspptrrGYIAMLAVESSFRGHGIATALVEKaidvmmkRQaDEIVLE-TEET-NvPAIKLYERLGF 146
                     5655555555667777777778888*****************953444432112222222.2223.249********** PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   1.4e-12   2.7e-09      21      80 ..      89     149 ..      83     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.4e-12
                 TSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH.S-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  21 ggelgalqvlpehrrrGlgsrlvkalakeiae.rgktvllvvvasNtpsirlyeklGfeki 80 
                  g++ +l v+ ++r+ G ++ lv++ +  +++ + ++++l + ++N p+i+lye+lGf   
  CCE29900.1  89 RGYIAMLAVESSFRGHGIATALVEKAIDVMMKrQADEIVLETEETNVPAIKLYERLGFLRS 149
                 499********************9999999994667788889****************765 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   3.2e-10   6.4e-07      74     142 ..      83     151 ..      60     154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 3.2e-10
                     ---TT-EEEEEEES.SHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEE CS
  Acetyltransf_8  74 daepgdrGiHllig.eaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekeke 142
                     + +p  rG   +++ e ++rg+g++tal+++ ++ ++++ +++ +v+E + +N  ai+l+e++Gf + k+
      CCE29900.1  83 HSPPTRRGYIAMLAvESSFRGHGIATALVEKAIDVMMKR-QADEIVLETEETNVPAIKLYERLGFLRSKK 151
                     556777887777776889*******************99.9************************98876 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   9.3e-10   1.9e-06      61     137 ..      65     146 ..       9     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 9.3e-10
  Acetyltransf_3  61 kdtgviGsvglrdleeedee.....aelgymlaps.fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     +d++ +G+v +    +++++     + + ++  +s f+g+G+at  v+ +++++++++ ++++v +++++N   i+++e+lGf
      CCE29900.1  65 SDSSLVGVVVCKLEVHSSHSpptrrGYIAMLAVESsFRGHGIATALVEKAIDVMMKRQ-ADEIVLETEETNVPAIKLYERLGF 146
                     333358888777555555556644455554444556******************9998.***********************9 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.5e-07   0.00069      67     125 ..      83     146 ..      56     148 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.5e-07
                     TTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--.....SSHHHHHTTT- CS
  Acetyltransf_9  67 pGktlkaagvtgVavapehrgrgvlskLlaraleemreegqplsllfP.....ssipiYrrfGy 125
                     +   ++ +++++ av    rg+g++++L+++a++ m ++++  ++l        +i++Y+r+G+
      CCE29900.1  83 HSPPTRRGYIAMLAVESSFRGHGIATALVEKAIDVMMKRQADEIVLETeetnvPAIKLYERLGF 146
                     44566779*******************************9999998875544434689999997 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.1e-06      0.01      31      56 ..      96     121 ..      86     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.1e-06
  Acetyltransf_CG  31 eVpeelrGkGiAkkLvkaalddaree 56 
                       V+ ++rG+GiA +Lv++a+d + ++
       CCE29900.1  96 AVESSFRGHGIATALVEKAIDVMMKR 121
                      6999****************987765 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014      0.27      12      34 ..      97     119 ..      89     133 .. 0.85
   2 ?   -2.4   0.0       2.4   4.8e+03      34      47 ..     162     175 ..     157     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
  Acetyltransf_13  12 vssshRrkgiAtkLldaarenfi 34 
                      v ss+R +giAt+L++ a++ ++
       CCE29900.1  97 VESSFRGHGIATALVEKAIDVMM 119
                      789************99987665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.4
  Acetyltransf_13  34 iyglelekeevAFs 47 
                       y l l+ + vAF 
       CCE29900.1 162 AYRLVLPLRTVAFN 175
                      67888999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1275.70
//
Query:       CCE29901.1  [L=303]
Description: uncharacterized protein CPUR_03749 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-78  263.2   0.0    6.9e-78  262.2   0.0    1.5  1  DUF1917   Domain of unknown function (DUF1917)


Domain annotation for each model (and alignments):
>> DUF1917  Domain of unknown function (DUF1917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.2   0.0   3.9e-82   6.9e-78       2     260 ..      21     282 ..      20     284 .. 0.89

  Alignments for each domain:
  == domain 1  score: 262.2 bits;  conditional E-value: 3.9e-82
     DUF1917   2 eervasfdveeyweeihpkslatiqaelkaaskaaakeeeakeesaaesklsnpyegspdarqleEsvedFLaRLpPstTkasekgpWiyianp..... 95 
                 e+rv++f+++e+ +++    + + +       +++           +++k +npy+g+ +a+ql+E+ ++FL+RLpP+tT++se++pWi+i+np     
  CCE29901.1  21 ESRVQQFNASEWINRHGTWGVGVPT-------RRPLCA-------METAKFHNPYAGVTYAWQLTETLSEFLSRLPPATTDQSEDVPWIFICNPfvare 105
                 5555555555555552222222221.......111111.......2247899*********************************************** PP

     DUF1917  96 ............aedeapeeegsdlaklveegtelLqeleekkqelekenakkkkkskaalkrelnkerkeleeeilelAretrvvsGk....WmLfvk 178
                             +edeap+e g +l+ +ve+++e+L  l+e  q+++++     +k+ a++ rel++er+++ ++il+lA++ +v++Gk    WmLf++
  CCE29901.1 106 dkttvvdaymkgNEDEAPPEAGRQLSFVVEGAKERLTLLSELIQRVKTS-----GKAGAFIARELSQERRHAASDILHLAHAGQVRTGKaskvWMLFCS 199
                 **********9659*********************************99.....6789***************************************** PP

     DUF1917 179 peevdevWkkvaeatakneLGiaAkvat.sededkkkerLicvyTkDFeDkeDVkRVLekLkelglvkkkgrpiyYksdayty 260
                 p+ v+e W+ va+ata+neLGiaAkva+ se +d++++rLic+yT+DF+Dk+DV+RVL+++kel++  ++ r+iyYk+d++ty
  CCE29901.1 200 PAMVNELWELVARATANNELGIAAKVAPrSELDDSTRDRLICIYTSDFMDKADVARVLQRMKELKIAGTGRRKIYYKPDIFTY 282
                 ****************************7788999***********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2064.46
//
Query:       CCE29902.1  [L=408]
Description: uncharacterized protein CPUR_03750 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.052   14.4   4.3        1.1   10.3   0.0    4.2  5  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.56     1e+04      14      25 ..      20      31 ..       8      38 .. 0.67
   2 ?    1.9   0.0     0.027   4.8e+02      23      35 ..     217     229 ..     201     231 .. 0.85
   3 ?   10.3   0.0   5.9e-05       1.1       8      37 ..     255     290 ..     248     290 .. 0.80
   4 ?   -3.5   0.1         1   1.8e+04      12      28 ..     331     343 ..     324     348 .. 0.64
   5 ?   -0.1   0.0      0.11     2e+03      24      37 ..     392     405 ..     368     406 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.56
                EEEEEETTSSEE CS
        WD40 14 tslafspdgawl 25
                +++ f+p+ + +
  CCE29902.1 20 SCVEFCPSDDRF 31
                688888877664 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.027
                 SEEEEEETTSEEE CS
        WD40  23 awlasGsdDgtvr 35 
                 +++ +G+dD t+r
  CCE29902.1 217 TMIYCGGDDSTLR 229
                 55889******98 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 5.9e-05
                 ESS.SSEEEEE.....EETTSSEEEEEETTSEEEEE CS
        WD40   8 tGH.ssvtsla.....fspdgawlasGsdDgtvriW 37 
                   H  +vt++      +++ g+ ++sGs+D ++r++
  CCE29902.1 255 GQHnAGVTAILplpyrTHDGGRIVLSGSYDDHLRVF 290
                 35655599999999989999999***********95 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 1
                 S..EEEEEEETTSSEEEEE CS
        WD40  12 s..vtslafspdgawlasG 28 
                 s  +t +      + las+
  CCE29902.1 331 SaaITEI------RVLASC 343
                 1457777......678877 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.11
                 EEEEEETTSEEEEE CS
        WD40  24 wlasGsdDgtvriW 37 
                  ++++ +D+ + +W
  CCE29902.1 392 CVSTSFYDKLLCLW 405
                 36677779999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2913.74
//
Query:       CCE29903.1  [L=606]
Description: related to negative acting factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4288.81
//
Query:       CCE29904.1  [L=90]
Description: uncharacterized protein CPUR_03752 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 658.31
//
Query:       CCE29905.1  [L=954]
Description: probable COPII coated vesicle component SEC24 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-70  235.3   0.0    1.1e-69  234.6   0.0    1.3  1  Sec23_trunk     Sec23/Sec24 trunk domain
    3.6e-23   81.3   0.0    1.7e-22   79.2   0.0    2.2  2  Sec23_helical   Sec23/Sec24 helical domain
    3.9e-18   66.0   0.0    8.1e-18   65.0   0.0    1.6  1  Sec23_BS        Sec23/Sec24 beta-sandwich domain
    6.1e-17   61.4   4.5    1.1e-16   60.6   4.5    1.4  1  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
    3.4e-08   33.3   0.0    9.8e-08   31.8   0.0    1.9  1  Gelsolin        Gelsolin repeat
  ------ inclusion threshold ------
      0.015   14.7   0.1      0.032   13.6   0.1    1.5  1  Vps36-NZF-N     Vacuolar protein sorting 36 NZF-N zinc-finger


Domain annotation for each model (and alignments):
>> Sec23_trunk  Sec23/Sec24 trunk domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.6   0.0   3.8e-73   1.1e-69       1     242 [.     348     589 ..     348     590 .. 0.97

  Alignments for each domain:
  == domain 1  score: 234.6 bits;  conditional E-value: 3.8e-73
                  SS--EEEEEEE-SHHHHHHTHHHHHHHHHHHHCTTSS.TSTT-EEEEEEESSSEEEEETSTTS...SSSEEEEECHTTSCCSSTSSSSSEETTTTHHH CS
  Sec23_trunk   1 pkppvflFviDvsleaikegelkalkeslkqsLdllP.eepralvglitfdsvvhffelksel...rqpkelvvsdlqdvflpladrlLvplseseav 94 
                  p+p+v+lF++Dvs+ a+++g+l++ ++++++sL+++P  + r+++g++++d+ +h+f++  ++    ++++lvvsdl+++flp +++lLv+l es++ 
   CCE29905.1 348 PQPLVYLFLLDVSYAAVSSGLLATCARTMLDSLSRIPnADRRTKLGFLAVDNSLHYFSIPKDEdenGETNMLVVSDLDEPFLPVPHDLLVSLTESRQS 445
                  79***********************************77*********************9997777899**************************** PP

                  HHHHHHHHHHHSTT-TTC-----HHHHHHHHHHHHCHCTS-EEEEEEESS---SSTTTSS-SBTTSCCTSSTTCHHCHSCSSSCHHHHHHHHHHHCTE CS
  Sec23_trunk  95 ledlLeelpemfavtagkrperalgpalkaavellkavetggkiivfvgslptvgaggklksredeslldidkekaklvkkadkfYkkLakecvkqgi 192
                  +e++L++lp+mf+++  +++ +++g+alka+++l+     ggki+v+  slp++g  gkl+ red++ll+++ke  +l+++  +fYk++a ec+k+++
   CCE29905.1 446 IEKFLQKLPDMFQNS--HSNGSCMGSALKAGHKLIA--ALGGKIVVLTASLPNMGD-GKLDMREDKKLLGTSKE-GSLLQTGSSFYKSFAVECSKNQV 537
                  ***************..*******************..789***************.*****************.888888888************** PP

                  EEEEEEECSS--SHHHHTHHHHTTT-EEEEETTTC..CHHHHHHHHHHHHHH CS
  Sec23_trunk 193 svDlFlfsldyvdlaelkqlaeltgGqvvlydsFs..aekdasklkqdlkrv 242
                  s+D+Flfs++y d+a+l++l+++tgGq+ +y+ ++  +++da k+ +++  +
   CCE29905.1 538 SIDMFLFSSQYQDVASLSNLPRYTGGQTWFYPGWHasRPEDALKFASEFSDY 589
                  ***********************************88889999**9999765 PP

>> Sec23_helical  Sec23/Sec24 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.2   3.7e+03      50      66 ..     545     561 ..     517     563 .. 0.66
   2 !   79.2   0.0   5.7e-26   1.7e-22       1     102 [.     689     791 ..     689     792 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
                    -------GGGTTHHHHH CS
  Sec23_helical  50 psqlqlpeslklLPlyi 66 
                    +sq+q  +sl+ LP+y+
     CCE29905.1 545 SSQYQDVASLSNLPRYT 561
                    45688888999999997 PP

  == domain 2  score: 79.2 bits;  conditional E-value: 5.7e-26
                    -HHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHHH----.---------GGGTTHHHHHHHHHTSTTTS--TT--HHHHHHHHHHHHH CS
  Sec23_helical   1 Dqeavtvllakqaidkalesgladarealdtslvdllsayrkvgasg.sspsqlqlpeslklLPlyilallKspafrggnsvpaDervfalsllls 95 
                    Dq a+t++++++a++++l+sgl++ar+al+ +l +ll++++k+  +g  + + lq+p++l+ LP++ l+l+K+  +r+++++p+D r++al+ll++
     CCE29905.1 689 DQCAITAYFSHKAVERTLDSGLEAARDALQSKLTELLQTFKKELGGGsMGGGGLQFPANLRGLPVLFLGLMKNVGLRKSTQIPSDIRSAALCLLST 784
                    899*****************************************887444466******************************************* PP

                    --HHHHH CS
  Sec23_helical  96 lpvdqll 102
                    lpv  l+
     CCE29905.1 785 LPVPLLV 791
                    ***8875 PP

>> Sec23_BS  Sec23/Sec24 beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   2.7e-21   8.1e-18       1      96 []     595     678 ..     595     678 .. 0.96

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 2.7e-21
                 EEEEEEEEEE-TTEEEEEEESSSEECSTBESSEESECSESEEEEEEEETT--EEEEEEESSBTCTTSEEEEEEEEEEEETTSEEEEEEEEEEEEEE CS
    Sec23_BS   1 gfnatlevrtSkelkvsgliGncvslsnvsekeiGeggtsewklcsldpdstlavyfdideklksgkqayiQfatlYthssgerrlRVttvalpva 96 
                 g++a+l+vr +++l+++ ++Gn++++s         +++  ++++++ +d++++v++ ide+l+ ++++++Q+a+l+t+++gerr+RV t++lp++
  CCE29905.1 595 GLEAVLRVRATTGLRMNAFYGNFFNRS---------SDL--CAFPAFPRDQCYVVEVAIDENLN-KNFVCLQTAVLHTTCNGERRIRVLTLSLPTT 678
                 679************************.........9**..*******************8887.7**************************9975 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   4.5   3.7e-20   1.1e-16       2      38 ..     275     311 ..     274     312 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 3.7e-20
  zf-Sec23_Sec24   2 irCrrCraylNpfckidfggkrwiCnfCnhknevppe 38 
                      rCrrCr+y+Npf+++ ++g+rw+Cn+Cn +n+vp++
      CCE29905.1 275 ARCRRCRTYINPFVTFLDHGHRWRCNMCNLSNDVPQA 311
                     6**********************************97 PP

>> Gelsolin  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   3.3e-11   9.8e-08       2      73 ..     818     889 ..     817     892 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 3.3e-11
                 CEEEEEBSSSGGGEETTSEEEEEESSEEEEEEHTT..SHHHHHHHHHHHHHHHHHCTTTTTSEEEEEETTHHHH CS
    Gelsolin   2 svlpkvvklsssslesgdcyLLdngftiflWiGke..ssqeeknfaadlaaeldseerfplpeliredqgkepa 73 
                 +vlp+   lss+ l + + yL+d g+t f+WiG++  +++  ++f++   ++++  + ++ pel++ d +++ +
  CCE29905.1 818 IVLPPATVLSSERLVPYGLYLIDDGQTQFVWIGRDavPQLISDVFGVADRSQVHVGK-GRIPELDN-DFNERVR 889
                 67899999**********************************************555.99***999.8888766 PP

>> Vps36-NZF-N  Vacuolar protein sorting 36 NZF-N zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.1e-05     0.032       8      30 ..     295     317 ..     291     322 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
  Vps36-NZF-N   8 atWvCpICsfsNevpsnfdpnas 30 
                   +W C  C  sN vp+ fd+ a 
   CCE29905.1 295 HRWRCNMCNLSNDVPQAFDWDAA 317
                  68*****************9433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 6426.58
//
Query:       CCE29906.1  [L=355]
Description: pathogenicity MAP kinase 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-68  228.7   0.0      9e-68  228.5   0.0    1.1  1  Pkinase        Protein kinase domain
    5.7e-32  111.0   0.0    7.4e-32  110.6   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
    0.00024   20.5   0.2    0.00038   19.9   0.2    1.2  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0023   16.9   0.2     0.0042   16.1   0.2    1.4  1  Haspin_kinase  Haspin like kinase domain
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.019   14.3   0.0    1.3  1  Kinase-like    Kinase-like
      0.037   13.9   0.2      0.089   12.7   0.2    1.5  1  APH            Phosphotransferase enzyme family
      0.074   12.1   0.1       0.11   11.5   0.1    1.2  1  Seadorna_VP7   Seadornavirus VP7


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.5   0.0   3.5e-71     9e-68       2     264 .]      24     311 ..      23     311 .. 0.88

  Alignments for each domain:
  == domain 1  score: 228.5 bits;  conditional E-value: 3.5e-71
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHHHSS- CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladllerkgsl 95 
                   +  +GeG++G+V +av+k +g++vA+Kki   + +     ++lrE+k+l+ ++h+ni+ ++++ +       +e+yl++e++e++ ++++++  + l
  CCE29906.1  24 DIQDVVGEGAYGVVCSAVHKPSGQKVAIKKITPFDHSM-FCLRTLREMKLLRYFNHENIISILDIQKPrgydsFNEVYLIQELMETD-MHRVIR-TQDL 119
                 66789**************************9886665.6679**********************998888889***********77.899996.688* PP

                 -HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHH CS
     Pkinase  96 seeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk....ltsfvgtseYlAPEvl.keneyskkvDvWslGvilye 189
                 s+++++ +++q+l++l+ +Hs++++HrDlKp+N+L++ + +lK++DFGla+ + s+ +    +t++v+t++Y+APE++ + +ey+k++DvWs+G+il+e
  CCE29906.1 120 SDDHCQYFIYQTLRALKAMHSANVLHRDLKPSNLLLNANCDLKVCDFGLARSAASQDDnsgfMTEYVATRWYRAPEIMlTFKEYTKAIDVWSVGCILAE 218
                 *****************************************************9999899*****************9889****************** PP

                 HHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT......SHH...HHHTTS........................-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 190 lltgkppfsgekgkekvekeldqlekilkilg......etkeklpeasei........................seeakdllkkllkkdpkkRltaeel 258
                 +l+gkp+f+g++ ++       ql+ il++lg       +  k+                              s+ a+dll+kll+ +p kR+t+ee+
  CCE29906.1 219 MLSGKPLFPGKDYHH-------QLTLILDVLGtptmedYYGIKS-----RrareyirslpfkkkvpprvlfpktSDLALDLLEKLLAFNPVKRITVEEA 305
                 *********444444.......4445666666432222222222.....1344446777888888********************************** PP

                 HTSGGG CS
     Pkinase 259 lqhpyl 264
                 l+hpyl
  CCE29906.1 306 LKHPYL 311
                 ****97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   2.9e-35   7.4e-32       3     209 ..      25     229 ..      23     248 .. 0.90

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 2.9e-35
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.....SSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.....keepllivteyvkgGdLlkfLrkk 95 
                  +++ +GeGa+G V+++  k     + +kVa+K+++   ++    + l+e+k+++ ++h+ni+++l +       + ++++++ e+++  d++  +r++
   CCE29906.1  25 IQDVVGEGAYGVVCSAVHK----PSGQKVAIKKITPFDHSMFCLRTLREMKLLRYFNHENIISILDIQKprgydSFNEVYLIQELMET-DMHRVIRTQ 117
                  57889***********999....8889********9999999**************************9654433345********86.9******98 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS.-HHHHHH.SEEEHHHHHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWm.apEslke.kkftsksDvWsf 191
                      l+ ++   f++q  ++++ ++s +++Hrdl   N Ll+ n   k++DfGLar+  ++d+ +   ++ +  +W+ apE++ + k++t++ DvWs 
   CCE29906.1 118 ---DLSDDHCQYFIYQTLRALKAMHSANVLHRDLKPSNLLLNANCDLKVCDFGLARSAASQDDNSGFMTEYVATRWYrAPEIMLTfKEYTKAIDVWSV 212
                  ...9******************************************************9999999999999*****98***8755167********** PP

                  HHHHHHHHTTSSGTTTTS CS
  Pkinase_Tyr 192 GvllwEiftlgespypgl 209
                  G +l E+++ g+  +pg 
   CCE29906.1 213 GCILAEMLS-GKPLFPGK 229
                  ********9.87766665 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   1.5e-07   0.00038      55     165 ..      63     165 ..      48     178 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.5e-07
         Kdo  55 rtravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqq 153
                  +r  rE++ll+ ++++ +  +  +  + ++++ +    l+ e +e   d+  ++++ ++l++   +  + ++ r+ + +h+a+v H+dl + n+ll++
  CCE29906.1  63 CLRTLREMKLLRYFNHENIISILDIQ-KPRGYDSFNEVYLIQELME--TDMHRVIRT-QDLSDDHCQYFIYQTLRALKAMHSANVLHRDLKPSNLLLNA 157
                 57888999999999999988877764.5688888899999999998..599999996.7799999999999999***********************99 PP

         Kdo 154 eeeeeaeiwliD 165
                 +      + + D
  CCE29906.1 158 NC----DLKVCD 165
                 86....444444 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   1.6e-06    0.0042     125     261 ..      48     176 ..      14     183 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.6e-06
  Haspin_kinase 125 evvlKvi.plevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGtdLeev...klkswkqalsifwqiv 216
                    +v++K+i p+       +s + +l  l+++kl++    + ++ + d  + +      +  + ++l+ + + td+ +v   +  s ++++   +q++
     CCE29906.1  48 KVAIKKItPF------DHS-MFCLRTLREMKLLRYFNHENIISILDIQKPRG----YDSFNEVYLIQELMETDMHRVirtQDLSDDHCQYFIYQTL 132
                    3433333133......444.67777777777776553333333333333333....3344456777777778888877334445578999999*** PP

  Haspin_kinase 217 kiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRlesseg 261
                      L++  ++ +  HRdL+  n L+++n    ++d+ l+R  +s++
     CCE29906.1 133 RALKAMHSA-NVLHRDLKPSNLLLNANCDLKVCDFGLARSAASQD 176
                    999988766.677**************************985554 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.5e-06     0.019     131     240 ..     110     216 ..      80     223 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.5e-06
  Kinase-like 131 lqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve......kgfaPpEllgsrggytrk 222
                  ++ +  t+    ++++  +  q +r    +++  ++h ++++ nlll+ +  l++ +f+  + a  +   s         + +  pE++     +   
   CCE29906.1 110 MHRVIRTQDLSDDHCQYFI-YQTLRALKAMHSANVLHRDLKPSNLLLNANCDLKVCDFGLARSAASQDDNSGFMteyvatRWYRAPEIMLT---F--- 200
                  3333333555567888888.99************************************854444433332222222444556666776665...3... PP

  Kinase-like 223 nktkmthkldaWqlGlvi 240
                     ++t ++d+W +G   
   CCE29906.1 201 --KEYTKAIDVWSVGCIL 216
                  ..3588899999999765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   3.5e-05     0.089     152     197 ..     128     170 ..      97     176 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.5e-05
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 ++++l+al +   ++ +lH+Dl+p Nll++++ +    v Df++a+
  CCE29906.1 128 IYQTLRALKAM-HSANVLHRDLKPSNLLLNANCDLK--VCDFGLAR 170
                 56677777775.788899************554544..89999886 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   4.4e-05      0.11     144     186 ..     125     165 ..      85     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.4e-05
  Seadorna_VP7 144 vniivaglkdLmdfhsestnllhGDcnpenlmcDknGylklvD 186
                     +i   l++L+ +h  s n+lh D +p+nl+ + n  lk+ D
    CCE29906.1 125 QYFIYQTLRALKAMH--SANVLHRDLKPSNLLLNANCDLKVCD 165
                   5689999********..899********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2617.83
//
Query:       CCE29907.1  [L=279]
Description: uncharacterized protein CPUR_08880 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-29  103.1   0.0    2.2e-27   96.0   0.0    2.1  1  TLD       TLD


Domain annotation for each model (and alignments):
>> TLD  TLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   1.2e-31   2.2e-27       1     138 [.     100     277 ..     100     278 .. 0.85

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 1.2e-31
         TLD   1 llyssskdgsslstllekie....nkgptlllikdekkyifGaflsqpwkssnkkfygdsesflfsl......................spkfkvykst 73 
                 l+ys ++dg sl tl+++++    ++++++l++kd+++ +fGa+ls++ + s + ++g++e+fl++                                 
  CCE29907.1 100 LIYSLEQDGASLATLYHRCRvfegHRAGFVLVVKDQDGGTFGAYLSEHPRPSPS-YFGNGECFLWKAsmlaslplppsadttrltrsttL--------- 188
                 69*********************888***********************99999.*************99*99**666444444444440......... PP

         TLD  74 gkn...........................kaylntssdglgfGggqpkfsLwidsslekgtsrhsetfengllsgaseerfkikdiEVWgl 138
                                               ++y+n++  +l++G+g ++++Lw+d+sl+ g+s++++tf+n++ls +  e+f++  +EVW l
  CCE29907.1 189 --AsqpslesqaptpvecirfkafpysglnDCYINCEAGFLSVGSGGGHYGLWLDDSLDVGHSSQCDTFGNEPLS-DAGEKFNVIGVEVWIL 277
                 ..1445555555566666666666666666********99***********************************.69************77 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2146.57
//
Query:       CCE29908.1  [L=328]
Description: related to uroporphyrinogen III synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-37  127.2   0.0    7.9e-37  126.8   0.0    1.1  1  HEM4      Uroporphyrinogen-III synthase HemD


Domain annotation for each model (and alignments):
>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   0.0   4.4e-41   7.9e-37      16     231 ..      48     301 ..      39     302 .. 0.85

  Alignments for each domain:
  == domain 1  score: 126.8 bits;  conditional E-value: 4.4e-41
                 E---EECCE......CCHHHHHHHHHT.....--SEEEE--HHHHHHHHHHHH...HTT---HHHHHCSEEESSHHHHHHHHHTT....---SEE-..S CS
        HEM4  16 elPlieiep......aedraelraalddleagkydwliftSanavealfealk...reeedvkalaslkvaavGpaTaraLeelg....lrvdlvpsee 101
                 ++P+ ++++      + ++  l++ + +  + +y ++iftS++avea+++ ++    + +   +l+++++++vGpaT+raL+++     l+v + ++ +
  CCE29908.1  48 FIPIFQHRFdeqglcKIQTLLLNRRISHCADAEYGGIIFTSQRAVEAFSHVVRngqGNDTIWPHLQKVPIYSVGPATTRALRAISqlppLQV-FGGE-T 144
                 666666666666666555666777888888999********************9888888888899*****************864443333.4666.* PP

                 SSHHHHGGGS-.......---EEE......EEE-SS.S--HHHHHHHH......HTTEEEEEE-SEEEEE-HHHHHHHHHHHHTT--...SEEEESSHH CS
        HEM4 102 gtaegLaeelae......slagkr......vlllrgeiarddlaegLe......ergaevdevevYetvpaeeepeelkealkagev...davvftSps 179
                 g++e+La+++ e      s    +      +l+l+ge++rd++++ L        r+++v+ev+vY t  ++++++++k+a+ + +    ++vv++Sp+
  CCE29908.1 145 GNGEALAKYILEhykewfS----NrptlppLLFLVGEQRRDIIPRMLMdpdlavDRKIQVTEVVVYGTDIMQSFSADFKAAVMETSHareRWVVVFSPT 239
                 ********99995655442....1455677*****************9999*9*****************************99544555********* PP

                 HHHHHHHH-S-HH.........HHHCTSEEEEESHHHHHHHH.HTT---SEEETS--HHHHH CS
        HEM4 180 tvrnllellkdeg.........delkevkvaaiGptTaealk.klglkvdvvaeeptaeglv 231
                 +++++l+ l+               +++ va+iGptT+++l  ++ +++dv+ae p+++g++
  CCE29908.1 240 GCDSMLQGLGLLDsdsgmmkstGRDGKTFVATIGPTTRAHLVsRFDFEPDVCAEMPSPDGIL 301
                 *********98779999**9998889999************989***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2674.04
//
Query:       CCE29909.1  [L=181]
Description: related to erv1 protein, mitochondrial precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-31  108.5   1.1    6.2e-31  106.8   0.2    1.9  2  Evr1_Alr  Erv1 / Alr family
  ------ inclusion threshold ------
      0.031   14.5   0.6       0.44   10.8   0.1    2.3  2  APOBEC1   APOBEC1
       0.65   10.2   3.0        5.5    7.2   0.1    2.8  3  Zf_RING   KIAA1045 RING finger


Domain annotation for each model (and alignments):
>> Evr1_Alr  Erv1 / Alr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.15   8.9e+02      41      58 ..      34      52 ..       7      69 .. 0.68
   2 !  106.8   0.2     1e-34   6.2e-31       1     100 []      80     172 ..      80     172 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.15
                SCHHHHHHHHH.HHHHCH. CS
    Evr1_Alr 41 pCeeCaehfek.vlaenpp 58
                pC++C +  +   +++n++
  CCE29909.1 34 PCRSCTSFAAWkAMSKNKT 52
                7888876443333444442 PP

  == domain 2  score: 106.8 bits;  conditional E-value: 1e-34
                 HHHHHHHHHHHHCSHSS..HHHHHHH-CHHHHHHHHHHHSSCHHHHHHHHHHHHHCH.CCCGSSHHHHHHHHHHHHHHHHHHTT...T-HHCHHHCCCC CS
    Evr1_Alr   1 cslWtllHtlaaevpekpteeqqkelavlkaflkliakfypCeeCaehfekvlaenppekevesrdelvlWlweaHNeVnkrlakeefdcsedkvkerw 99 
                 +++WtllH++aa++pe p+++qq+++    +f+kl++k+ypC++C+++f+++l ++pp+  v+srde+ +Wl++aHNeVn++l+k++fdc   +++erw
  CCE29909.1  80 RGTWTLLHSIAATYPEMPSKSQQSDM---MSFVKLFSKLYPCWVCSKDFQSYLGKEPPR--VQSRDEFGKWLCDAHNEVNRKLGKPQFDCL--RWDERW 171
                 79************************...9***************************88..******************************..****** PP

                 C CS
    Evr1_Alr 100 p 100
                 +
  CCE29909.1 172 R 172
                 6 PP

>> APOBEC1  APOBEC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.045   2.7e+02       6      19 ..      42      55 ..      36      66 .. 0.87
   2 ?   10.8   0.1   7.4e-05      0.44      35      65 ..     103     133 ..      92     156 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.045
     APOBEC1  6 kiwrsssknttkha 19
                  w+  skn+t+h 
  CCE29909.1 42 AAWKAMSKNKTRHD 55
                68**********95 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 7.4e-05
     APOBEC1  35 psvscsitwflstspcgkcskaileflsqhp 65 
                 + ++ ++  f +  pc+ csk  + +l + p
  CCE29909.1 103 SDMMSFVKLFSKLYPCWVCSKDFQSYLGKEP 133
                 55667788888999*************9876 PP

>> Zf_RING  KIAA1045 RING finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.021   1.3e+02      16      46 ..      29      59 ..      24      69 .. 0.76
   2 ?    7.2   0.1   0.00093       5.5      17      30 ..     113     126 ..     102     158 .. 0.89
   3 ?   -2.3   0.1      0.83     5e+03      55      64 ..     172     181 .]     150     181 .] 0.74

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.021
     Zf_RING 16 aeelypCRvCtkvfHegClrklgylqdesal 46
                +++  pCR Ct     + + k + ++d +a+
  CCE29909.1 29 GKDGKPCRSCTSFAAWKAMSKNKTRHDAAAQ 59
                567789****998888888887777776665 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00093
     Zf_RING  17 eelypCRvCtkvfH 30 
                 ++lypC vC+k f 
  CCE29909.1 113 SKLYPCWVCSKDFQ 126
                 689********985 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.83
     Zf_RING  55 etGWsCaeCd 64 
                  tGW    Cd
  CCE29909.1 172 RTGWKDGRCD 181
                 6889888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1497.38
//
Query:       CCE29910.1  [L=572]
Description: probable pyruvate decarboxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-34  117.3   0.0    1.2e-33  116.2   0.0    1.6  1  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    4.6e-20   71.8   0.0    9.4e-20   70.7   0.0    1.5  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
    4.8e-14   52.4   0.2    1.3e-13   51.0   0.0    1.8  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
  ------ inclusion threshold ------
      0.096   11.6   0.0       0.16   10.9   0.0    1.2  1  E1_dh         Dehydrogenase E1 component


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   2.6e-37   1.2e-33       1     169 [.      12     184 ..      12     186 .. 0.93

  Alignments for each domain:
  == domain 1  score: 116.2 bits;  conditional E-value: 2.6e-37
                   EEHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEE CS
  TPP_enzyme_N   1 mtvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvls 97 
                   m+v+e+l+r+L++ gv++v gvpG+ +l  ld+l +  g+++v +++E +aa+aAdgyar+ g +g++++t g+G ++a++++a+A++++iP+++++
    CCE29910.1  12 MDVSEYLFRRLHEVGVRSVHGVPGDYNLVALDYLPQV-GLKWVGSVNELNAAYAADGYARVNG-IGALITTFGVGELSAINGIAGAFSEHIPVVHIV 106
                   789**********************************.7**********************87.********************************* PP

                   EE--CCCHH.....S..TC--T..-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N  98 gdrptslrg.....qgvlqqel..dqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                   g ++t +++     +++l +      +++  ++  ++ ++++p+e++ +++ A+r++   r++Pvy++lp d+ +++v+
    CCE29910.1 107 GYPSTISQRngmllHHTLGNGDfnVFANMNTEISCDVAKLNNPSEIAGQIDHALRQC-WVRSRPVYITLPTDMAQAKVE 184
                   *********88887666665556446667779999**********************.9***************99986 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   2.1e-23   9.4e-20       3      98 ..     210     308 ..     208     334 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 2.1e-23
                   HHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGS.CHHHHHHHHH-SEEEEES-SSSTCCCTT.T CS
  TPP_enzyme_M   3 kaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhg.skaanealeeaDlvlalGarfddirttg.s 96 
                    ++++l++ak+p++lv+  ++r+++ +e+++l++k+g+Pv+ t+mgk++++e+h  + g ++g  +   ++++++e++Dl++ +Ga  +d++ttg s
    CCE29910.1 210 VILKYLNSAKNPMLLVDACAIRHRVLTEIHDLIDKTGLPVFVTPMGKSAVNENHSSFGGvYAGAGShPLEVKDIVESSDLIITIGALKSDFNTTGfS 306
                   5789*******************************************************8888887456788899*******************953 PP

                   TT CS
  TPP_enzyme_M  97 ep 98 
                   ++
    CCE29910.1 307 YR 308
                   33 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.6   7.1e+03      62      79 ..      89     106 ..      79     108 .. 0.69
   2 !   51.0   0.0   2.8e-17   1.3e-13      19      91 ..     411     487 ..     394     539 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.6
                   GGGHHHHHHTT-SEEEEE CS
  TPP_enzyme_C  62 lqelatavrrnlpitvvv 79 
                   ++ +a a  +++p++++v
    CCE29910.1  89 INGIAGAFSEHIPVVHIV 106
                   566677777777777776 PP

  == domain 2  score: 51.0 bits;  conditional E-value: 2.8e-17
                   SEEECETTTS-TTTHHHHHHHHHHH....STTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHH CS
  TPP_enzyme_C  19 rsyltsgglgtmGyglpaAiGakla....kpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggq 91 
                    + lt+ ++g++G++++a  Ga+la     +dr+ + +vGDG+f+ + qe++t++r++lp++++v+ Neg+   +  
    CCE29910.1 411 VTALTQILWGSIGWSVGACQGAALAakdmGRDRRTILFVGDGSFQLTAQEVSTMIRHRLPVIIFVICNEGFTIERFI 487
                   455667899***************633322379*************************************9887765 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.5e-05      0.16     107     164 ..     426     482 ..     414     484 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.5e-05
                 HHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--E.EEEEEEESEE CS
       E1_dh 107 vplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpv.ifvveNNkyg 164
                 v   +G+alaak  g ++ +il++GDg+  q ++ e  ++   ++lpv ifv+ N ++ 
  CCE29910.1 426 VGACQGAALAAKDMGRDRRTILFVGDGS-FQLTAQEVSTMI-RHRLPViIFVICNEGFT 482
                 44567*********************97.455666666665.47888878999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4533.53
//
Query:       CCE29911.1  [L=284]
Description: uncharacterized protein CPUR_03758 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-17   61.0   0.0    1.4e-16   60.2   0.0    1.4  1  BLACT_WH       Beta-lactamase associated winged helix domain
    1.1e-14   54.9   6.1    6.4e-13   49.2   6.1    2.1  1  Lactamase_B    Metallo-beta-lactamase superfamily
      1e-05   25.2   0.2    1.7e-05   24.4   0.2    1.4  1  Lactamase_B_2  Beta-lactamase superfamily domain
    0.00059   19.8   0.0    0.00087   19.2   0.0    1.3  1  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> BLACT_WH  Beta-lactamase associated winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   3.2e-20   1.4e-16       1      47 []     230     275 ..     230     275 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 3.2e-20
    BLACT_WH   1 TveelVkviYkdvpeslhpaAergvlahLeKLeeeGkVkregdkgkW 47 
                 +v+++V++iY++vp++lhpaA+rg+l++++KL ++G+++++++  +W
  CCE29911.1 230 SVMDMVQIIYRNVPAELHPAACRGILQIMDKLTRDGLAVQVDQ-YRW 275
                 79****************************************6.999 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   6.1   1.4e-16   6.4e-13       4     197 .]      32     187 ..      29     187 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.4e-16
                  CSSEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCH CS
  Lactamase_B   4 dpvnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagv 101
                   ++n+yl+  + + iL+DtG + + +   l    l  +   v  v+l+H+H+DH+Gg ++l + ++ +v++  e ++                     
   CCE29911.1  32 QGTNTYLLGSGHRRILVDTGEGRPGWISSL-RSTLAEEKATVGLVLLSHWHHDHTGGINDLLSIAPGAVIHKNEPEAGQ------------------- 109
                  689************************987.999999*************************99887766554433332................... PP

                  CGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHSEEEESS CS
  Lactamase_B 102 sadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkaevlvpgH 197
                         d+ +++++++++++l ++++pgh+ +h+v+ + +++  ft D +l + t+ ++                yl+sl+k+++l   + +pgH
   CCE29911.1 110 ------QDISDGQTFTADGVTLAAFHTPGHTKDHMVFVLAEEDAMFTADNVLGHGTAVFED------------LVAYLQSLDKMRRLFSGRAYPGH 187
                  ......45668*****************************************999999888............99999999999999888888888 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.2   3.8e-09   1.7e-05       1      57 [.      44      98 ..      44     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 3.8e-09
                   SEEEES--TT...HHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EE CS
  Lactamase_B_2  1 rriLiDagpd...lrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpkk 57
                   rriL+D+g +   +   ++++     l +e + + +Vll+h H DH+ g+ +l  ++p  
     CCE29911.1 44 RRILVDTGEGrpgWISSLRST-----LAEEKATVGLVLLSHWHHDHTGGINDLLSIAPGA 98
                   8*********55544342333.....4666689********************9977753 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.9e-07   0.00087       4      85 ..      31     132 ..      28     172 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.9e-07
  Lactamase_B_3   4 wlghnsflletagarilvDPf.........kanlgyeppaeeaDlvlisqaledHahletlkql..............aenvkvleegeslevggl 76 
                      g n++ll ++  rilvD +             ++++++ ++ lvl+s+ +  H h+  ++ l              +   + +++g++++++g+
     CCE29911.1  31 LQGTNTYLLGSGHRRILVDTGegrpgwissL-RSTLAEEKATVGLVLLSHWH--HDHTGGINDLlsiapgavihknepEAGQQDISDGQTFTADGV 123
                    5699***************997777776431.55666777************..777777777766677777776666444455666888888888 PP

  Lactamase_B_3  77 eiravatsh 85 
                     + a++t  
     CCE29911.1 124 TLAAFHTPG 132
                    888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2236.93
//
Query:       CCE29912.1  [L=100]
Description: uncharacterized protein CPUR_03759 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 775.32
//
Query:       CCE29913.1  [L=865]
Description: related to SGD1-involved in HOG pathway [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-22   79.2   3.6    2.1e-21   76.6   0.6    2.4  2  MIF4G     MIF4G domain
    6.8e-13   48.6   0.0    4.9e-12   45.8   0.0    2.5  1  MA3       MA3 domain


Domain annotation for each model (and alignments):
>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.6   2.3e-25   2.1e-21       1     212 []     330     534 ..     330     534 .. 0.92
   2 !    2.9   0.1    0.0084        75      33     110 ..     670     753 ..     650     764 .. 0.59

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 2.3e-25
                 HHHHHHHHHCHTTTTHHHHHHHHHHHHHCS.CHHHHHHHHHHHHHHHHHCG.....GGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC-S-HHH CS
       MIF4G   1 lkkvkgilnklskenfevlikqllklamdd.dknelkevielifekaveep.....sfsplyarlcgklnsrfqqnFrikllnklqeefekryelenel 93 
                 +kk++g  n+ls++nf +l++++ + ++   +++    ++++i +  + +p     +f+ l+  + ++++ +  + F+++l+ +l++ef ++y l +  
  CCE29913.1 330 QKKLQGVVNRLSDGNFISLAQSIESMYQVHaRGEVTEILTDTILAQ-IRKPeslndQFLVLIGGFSAAIYRIKGSSFGSHLVRQLLKEFSEQYALSSDQ 427
                 69***************************94444444444444333.333357779******************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHTTSSEHHHHHHHHHHHHHGGCCCCSCCHSCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHCS CS
       MIF4G  94 eenedgnrrrrlglvrflgelfklkmltskilldclkellssltketaddppqdleeieilltllttigktlennekakkeldqffkriqkiledatrq 192
                   n +g r++ ++l+ fl+ l+ +++l + i++d l++ll++l++           ++e+ll++++ +gk+l+   +++++l+ + + +++++++   +
  CCE29913.1 428 TVNHAGIRKEPSNLLAFLTQLYVFEVLGCGIVFDYLERLLEKLNE----------LNVELLLRVCRMAGKLLR--RDDPQALKHISNVLHAAVSNFGYS 514
                 *********************************************..........******************..*******************9889* PP

                 SSSHHHHHHHHHHHHHHHTT CS
       MIF4G 193 elssrirfmlkdlielkknk 212
                 ++s r++fm++ + +lk++k
  CCE29913.1 515 NISVRTKFMIETIQDLKNSK 534
                 ******************97 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.0084
                 HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC........-S-HHHHHHHHHHHHHHHHHHHH CS
       MIF4G  33 nelkevielifekaveepsfsplyarlcgklnsrfqqnFrikllnklqeefekry........eleneleenedgnrrrrlglvrf 110
                 +e  e+++ + +++ +e +   +ya l+g+ ++ ++ ++r ++ n+l   f+           e+e+++e ++ +n+rr ++ + f
  CCE29913.1 670 DEQLEITRVLLQCVGSELQYNEYYA-LVGRQACANS-RVRFSFQNRLWAMFRGLGeslfgaeaEKEEAMEGQRLKNDRRLRNVAQF 753
                 3444555566666666666555554.5566666666.6666666666666666556666666666666666666666666666666 PP

>> MA3  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   5.5e-16   4.9e-12       4     112 ..     644     763 ..     642     764 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 5.5e-16
                 HHHHHHHSSS...SHHHHHHHHHHTT--.TTHHHHHHHHHHHHHHS.SS--HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHGGGGS-HH.......... CS
         MA3   4 kifliieeylssgdyeeavsklekLklp.kqeheivkillecaleesktyneyygllleklceknlilkkqfekgfwdvlesledleld.......... 91 
                 +if+ i+++l   dye a +++ +L l+ + + ei+++ll+c+  e  +yneyy+l+  + c +n+  + +f++ +w +++ l    +           
  CCE29913.1 644 AIFTAIMSAL---DYEHAHRQFADLRLKrDEQLEITRVLLQCVGSE-LQYNEYYALVGRQAC-ANSRVRFSFQNRLWAMFRGLGESLFGaeaekeeame 737
                 69********...*********************************.***************.9*******************99999999******** PP

                 ........HHHHHHHHHHHHHHTTSS CS
         MA3  92 .....ipeairnlaefvarlisediL 112
                        +++rn+a+f+a+l++++ L
  CCE29913.1 738 gqrlkNDRRLRNVAQFYASLVADGYL 763
                 **9988899*************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.40
# Mc/sec: 6470.24
//
Query:       CCE29914.1  [L=146]
Description: uncharacterized protein CPUR_03761 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1143  (0.0637515); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1029.32
//
Query:       CCE29915.1  [L=293]
Description: uncharacterized protein CPUR_03762 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-10   41.8   0.4    1.8e-08   34.9   0.1    3.0  3  ARID           ARID/BRIGHT DNA binding domain
  ------ inclusion threshold ------
      0.056   13.3  10.4      0.077   12.9  10.4    1.2  1  SPX            SPX domain
        2.4    8.4   5.6        1.7    8.8   1.3    2.3  2  baeRF_family5  Bacterial archaeo-eukaryotic release factor fa


Domain annotation for each model (and alignments):
>> ARID  ARID/BRIGHT DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.1   3.1e-12   1.8e-08       2      89 ..      55     137 ..      54     137 .. 0.86
   2 ?    3.6   0.0     0.018   1.1e+02       4      66 ..     172     189 ..     169     218 .. 0.52
   3 ?   -3.6   0.0         3   1.8e+04       2      15 ..     231     244 ..     230     258 .. 0.64

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 3.1e-12
                 HHHHHHHHHHHHHHTTS.SSS----SSSS-STTHHHHHHTTTSSHHHHTT..CHHHHHHHHHTS-..-.......HHHHHHHHHHHHHHH CS
        ARID   2 keeFlstLkqfhenrgt.lkkiPviggkevdlykLyraVikrGGfrkvtq.knkWeevaqklglpredpeasesvaqalksiYeryLlpy 89 
                 +++F  +++ f+e+    ++ +P ++g+++ lykL raV+     +kv + +  W++va++lg++ ++   ++ va+ lk+++e++L+ +
  CCE29915.1  55 RDRFEYEIRTFVEETRRsVSLYPEVEGQSFHLYKLARAVV----TQKVANeQVDWRRVAEDLGYELKQ---NQGVANGLKKCFEKNLAVF 137
                 68999999****9877766889******************....7888763467*********97655...679*************876 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHTTSSSS----SSSS-STTHHHHHHTTTSSHHHHTT.CHHHHHHHHHTS-.. CS
        ARID   4 eFlstLkqfhenrgtlkkiPviggkevdlykLyraVikrGGfrkvtqknkWeevaqklglpre 66 
                 +F+++L++f +++g                                              p +
  CCE29915.1 172 HFYQDLEDFQDRSGL---------------------------------------------PVK 189
                 566666666555554.............................................222 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3
                 HHHHHHHHHHHHHH CS
        ARID   2 keeFlstLkqfhen 15 
                 ++eF s+L+++ ++
  CCE29915.1 231 EDEFQSNLHSLERQ 244
                 67788888776554 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  10.4   1.3e-05     0.077      95     220 ..      15     246 ..       2     284 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
         SPX  95 prrsplsrssrssssygglvssppsansssssddssesnpa.......................................................... 135
                 +r+s++      s s+++ +++p+ ++ s+  +++     +                                                          
  CCE29915.1  15 QRKSSM------SASATENPRQPSASHESTPAQSK-----Edetkiedkenrdrfeyeirtfveetrrsvslypevegqsfhlyklaravvtqkvaneq 102
                 222222......22222222222222222222222.....12233455555677777777777777777777777888888888888888999999999 PP

         SPX 136 .....................................................dssssssssesesssssspsllrrlfs......esesreeksersy 175
                                                                       +s+ + ++++   +++  + l+ +++      ++es++++  ++ 
  CCE29915.1 103 vdwrrvaedlgyelkqnqgvanglkkcfeknlavffeasrilqaklyerecspAQSEEDGNESEADDEDHFYQDLEDFQDrsglpvKRESEDQEVVDEL 201
                 999999999999999999999999999999999999999999999999886554444444455555555555555555558888888888888888888 PP

         SPX 176 etrplraekeFferLdseLnkvetFykakeeefterlesLrkqle 220
                 ++ ++++ ++ fe   ++L+k e  ++++e+ef   l sL++ql+
  CCE29915.1 202 KECFKENLAALFEEVLDDLEKEEAAQEHEEDEFQSNLHSLERQLY 246
                 889999*************************************97 PP

>> baeRF_family5  Bacterial archaeo-eukaryotic release factor family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2     0.083     5e+02      46      80 ..      33      68 ..      20      75 .. 0.68
   2 ?    8.8   1.3   0.00029       1.7      26      88 ..     170     230 ..     163     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.083
  baeRF_family5 46 kaer.ssgsgskdefeerfeenqqRwyKslasklek 80
                   ++++ + +++++de +   +en+ R+  ++ + +e+
     CCE29915.1 33 ASHEsTPAQSKEDETKIEDKENRDRFEYEIRTFVEE 68
                   222225566679999999999999997777776665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00029
  baeRF_family5  26 ekeyeldletedWrekkgpskaerssgsgskdefeerfeenqqRwyKslaskleklakerewe 88 
                    e+++    + ed+++++g + +++s  ++ +de++e f+en    + ++ ++lek+ +++e e
     CCE29915.1 170 EDHFY--QDLEDFQDRSGLPVKRESEDQEVVDELKECFKENLAALFEEVLDDLEKEEAAQEHE 230
                    44444..45689******777777788888**************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1646  (0.0918066); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2100.52
//
Query:       CCE29916.1  [L=533]
Description: uncharacterized protein CPUR_03763 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00049   19.4   0.0    0.00079   18.7   0.0    1.3  1  DndB      DNA-sulfur modification-associated
  ------ inclusion threshold ------
      0.025   13.3   0.1      0.041   12.6   0.1    1.2  1  DUF3723   Protein of unknown function (DUF3723)


Domain annotation for each model (and alignments):
>> DndB  DNA-sulfur modification-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   8.8e-08   0.00079      35     119 ..      47     138 ..      27     167 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 8.8e-08
        DndB  35 pnspelraqRklnksrvkeIakYllensde.yifsaltasv.d.eeleflplsssq.kekvGvlkipmdaeil....ivDGQHRraAieealk 119
                 +  ++++ +Rkl++++v+++++   +   + +++ +  + v    +++    s++   e+ + l i  ++ i+    ++DGQHR+aA+++ + 
  CCE29916.1  47 ETTWSIGSNRKLDTEHVSKLKSVFEKEGLKrMAPENRLICVcKaVDVQASTTSTIWsDENPVDL-IHWSEAIYqpfeVLDGQHRIAALRDYVG 138
                 3459999*************99996654445777654445523355555555544333444444.555555556666************8876 PP

>> DUF3723  Protein of unknown function (DUF3723)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   4.6e-06     0.041      51      88 ..     120     163 ..      86     169 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.6e-06
     DUF3723  51 qlecLhGkhRlrAaeevlees.....dkwWvVdLYld.diseel 88 
                   e+L G+hR++A ++++ ++     + wW+ +LY + +++++l
  CCE29916.1 120 PFEVLDGQHRIAALRDYVGDTendhaELWWTCELYDQeTLPKNL 163
                 4689*********999987765556688*******983456665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3769.80
//
Query:       CCE29917.1  [L=115]
Description: uncharacterized protein CPUR_03764 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 896.55
//
Query:       CCE29918.1  [L=233]
Description: uncharacterized protein CPUR_03765 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1817.05
//
Query:       CCE29919.1  [L=219]
Description: uncharacterized protein CPUR_03766 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1856.96
//
Query:       CCE29920.1  [L=195]
Description: uncharacterized protein CPUR_03767 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0096   15.8   0.0      0.014   15.3   0.0    1.2  1  MHC_I_2   Class I Histocompatibility antigen, NKG2D ligand, d


Domain annotation for each model (and alignments):
>> MHC_I_2  Class I Histocompatibility antigen, NKG2D ligand, domains 1 and 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.7e-07     0.014      19     104 ..      74     164 ..      56     176 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.7e-07
                 ---EEEEEEETTEEEEEEESS-------------HHHHHHHHHHHHHHHH.....HHHHHHHHHCS---TTTT-SS--EEEEEEES-TT-S CS
     MHC_I_2  19 plwyeakclvdeililhlsninktmtsgdpgetanatevgecltqpvndl.....cqklrdkvsntkvdthktngyphlqvtmiypqsqgq 104
                   +   k   d  l l l +  k  t g p e+++ te+   + + v  +     +++ ++k+  ++    kt   p+ +vt  yp+sq +
  CCE29920.1  74 ACFLTVKEKADFQLALELREAGKITTPGAPFEASDKTELDALMVRGVSKIitydpVKHKKEKILRSREVKGKTTDEPYEKVTARYPRSQRR 164
                 34556778889999***************************999999866221115677889999998999*****************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1449.53
//
Query:       CCE29921.1  [L=719]
Description: related to monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-14   51.5   0.0      2e-13   50.3   0.0    1.6  1  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
    5.4e-11   42.7   0.5    1.6e-10   41.1   0.5    1.8  1  Glyco_hydro_2_N  Glycosyl hydrolases family 2, sugar binding 
    6.7e-11   41.3   0.0    1.7e-10   40.0   0.0    1.7  1  FMO-like         Flavin-binding monooxygenase-like
    5.4e-08   32.4   0.0    6.7e-05   22.2   0.0    2.5  3  K_oxygenase      L-lysine 6-monooxygenase (NADPH-requiring)
      2e-07   30.5   0.0    6.9e-05   22.2   0.0    2.3  2  Thi4             Thi4 family
    4.3e-07   30.1   0.0    4.3e-06   26.9   0.0    2.4  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
      5e-07   29.2   0.0    2.4e-06   27.0   0.0    2.0  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    9.7e-05   21.6   0.0     0.0018   17.4   0.0    2.3  2  Lycopene_cycl    Lycopene cyclase protein
    0.00011   20.9   0.0      0.029   13.0   0.0    2.6  3  Mqo              Malate:quinone oxidoreductase (Mqo)
    0.00021   21.0   0.0     0.0032   17.1   0.0    2.7  3  DAO              FAD dependent oxidoreductase
     0.0016   18.9   0.0        2.8    8.5   0.0    2.7  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
     0.0041   16.3   0.0      0.042   12.9   0.0    2.4  2  FAD_binding_2    FAD binding domain
  ------ inclusion threshold ------
      0.056   13.4   0.2        1.3    9.0   0.0    2.9  3  NAD_binding_9    FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.4e-16     2e-13       1     197 [.     243     444 ..     243     448 .. 0.80

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.4e-16
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagl.edylilEkg.nignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfel 96 
                  iIiGaG  G+++a+ l++ +   +y+i++   +ig +++ +       +    s+ ++++      ee++       + ++++ +leY ++ a+++ +
   CCE29921.1 243 IIIGAGLSGINFAYRLQERNPnLSYCIVDGRhEIGGTWSLFNYPGIRSD----SDLFTFGFSWRPWEEQQ-------PIAQGARILEYIKASAAQEGI 329
                  8****************9875358*****77699987765555554433....23344433223334444.......5689*************9998 PP

  Pyr_redox_3  97 ..piklfeeVesvkkedeg....fevetske...tyeAkkviiAtGefdk..PnklnipGeek...lvkhyskvkefhkyagqkvvViGgknSavDaA 180
                    +ik +++V+sv+ ++e+    f ++++ +   ++++++v++ tG++d+  P k +ipG ++   +v+h +  ++  +y++++vv+iG + +av   
   CCE29921.1 330 dkKIKFNHRVNSVDWSSESstwkFDITANASdpvSLQSRFVFLGTGYYDYnePLKAHIPGIDDfegTVIHPQFWPKDLDYTNKDVVIIGSGATAVTLV 427
                  446**********97433223459***99987789************98644999******98666789999998777******************** PP

  Pyr_redox_3 181 lelvrkgaeVtvvtrgs 197
                    +++k a+ t++ r+ 
   CCE29921.1 428 PSMADKAAHTTMLQRSP 444
                  *************9975 PP

>> Glyco_hydro_2_N  Glycosyl hydrolases family 2, sugar binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.5   1.2e-13   1.6e-10      65     153 ..     106     190 ..      86     207 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.2e-13
                      CEEEEEEEEEE-HHHHHSEEEEEESEEESEEEEEETTEEEEEEE-TTS-EEEEGGGGS-SEEE.EEEEEEESTTGGGGGBECTCEESSSE CS
  Glyco_hydro_2_N  65 gtgvYartfeidskwaekkvrllFegvtsasevwvngqevgkrqgsylpfefDltpylseGkn.riavkvlkwsdgsyieDeskaltgdl 153
                         ++ r f++++ w++++v l Fe+v+    v++n+  vg++ g+y  f +D+t+ ls G++ +    v      ++i+  ++++  + 
       CCE29921.1 106 TAMWFVRHFKVPDIWKKQNVLLHFEAVDYEATVFMNNVKVGHNVGGYFRFTVDITRNLSRGQDnKFLWNV-----HQVIDQMNQTYEIKA 190
                      4679*********************************************************974665555.....444444444443332 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   1.2e-13   1.7e-10      67     221 ..     298     449 ..     240     494 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 1.2e-13
    FMO-like  67 cfsdfplpedypnflhnsklleylklfakefdllkyiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekf 165
                  fs  p +e+ p   +  ++ley+k+ a + ++ k i+f+  v sv+  +++s + +++++++  +   s     v + tG++ + +  +   pGi+ f
  CCE29921.1 298 GFSWRPWEEQQP-IAQGARILEYIKASAAQEGIDKKIKFNHRVNSVDWSSESS-TWKFDITANASDPV-SLQSRFVFLGTGYYDYNEPLKAHIPGIDDF 393
                 566667777777.467789***************************9877654.56777766554433.333456999*****9988666779****** PP

    FMO-like 166 kGqyfhsrdykepevfkgkrvlviGlGnsggdiavelsrtaeqvllstrsGswvls 221
                  G ++h + + +   +++k v++iG G ++  +   ++ +a++  +  rs +++l+
  CCE29921.1 394 EGTVIHPQFWPKDLDYTNKDVVIIGSGATAVTLVPSMADKAAHTTMLQRSPTYILA 449
                 ************************************99999999999999999986 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0015         2       3      38 ..     240     275 ..     238     281 .. 0.90
   2 !   22.2   0.0   4.8e-08   6.7e-05     105     221 ..     325     439 ..     318     454 .. 0.76
   3 ?   -3.7   0.0       3.6   4.9e+03     324     340 ..     563     579 ..     554     580 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0015
  K_oxygenase   3 lDligiGiGpsnLsLailleevkkelkalflerqpe 38 
                  +D+i+iG+G s + +a +l+e++ +l+ + ++ ++e
   CCE29921.1 240 FDVIIIGAGLSGINFAYRLQERNPNLSYCIVDGRHE 275
                  79********************99999999998876 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 4.8e-08
  K_oxygenase 105 vasqleeqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvG....t...epkiPevleklegkervvHsseylerkeellakkria 195
                  +++ ++++++f+++v++v++++e+++  ++++   ++ +  +l++r + lg+G    +   +++iP + +++e   +v+H +   ++   + ++k+++
   CCE29921.1 325 AQEGIDKKIKFNHRVNSVDWSSESSTWKFDITA--NASDPVSLQSRFVFLGTGyydyNeplKAHIPGI-DDFE--GTVIHPQFWPKDL--DYTNKDVV 415
                  56779999**************99878888887..566789************433211113344443.3344..7999998877776..899***** PP

  K_oxygenase 196 VvGsGqSaaeifedllrrqkkvelkl 221
                  ++GsG +a  ++  +++++++   ++
   CCE29921.1 416 IIGSGATAVTLVPSMADKAAH--TTM 439
                  *********999999988664..344 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3.6
  K_oxygenase 324 geeetlevdavvlATGY 340
                  ++ ++++ d++v+ATG 
   CCE29921.1 563 KSGREMHPDIIVTATGL 579
                  56678899*******95 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     5e-08   6.9e-05      16      58 ..     238     280 ..     229     330 .. 0.83
   2 !    5.8   0.0     0.005       6.9      13      39 ..     407     433 ..     398     444 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5e-08
                 TEEEEEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS--TTTT CS
        Thi4  16 aesDvvivGaGssGLtaayylakk.pdlkvailersvspGGGaw 58 
                 ++ Dv+i+GaG sG+  ay l ++ p+l  +i++ +  +GG +w
  CCE29921.1 238 VDFDVIIIGAGLSGINFAYRLQERnPNLSYCIVDGRHEIGG-TW 280
                 578******************9999***********99986.55 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.005
                 HHHTEEEEEEE--SHHHHHHHHHHHHC CS
        Thi4  13 lkyaesDvvivGaGssGLtaayylakk 39 
                 l+y + Dvvi+G+G++ +t    +a k
  CCE29921.1 407 LDYTNKDVVIIGSGATAVTLVPSMADK 433
                 68*************999988877776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.1e-09   4.3e-06       1      46 [.     244     291 ..     244     311 .. 0.86
   2 ?   -0.2   0.0      0.86   1.2e+03       1      26 [.     416     441 ..     416     445 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.1e-09
                    EE--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSGGG-EECETTCEEC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka..gfdvlllekrdrlGGraasyevpgvrvd 46 
                    I+GaGlsG  +Ay+L+++  +++  +++ r+ +GG ++ +++pg+r d
     CCE29921.1 244 IIGAGLSGINFAYRLQERnpNLSYCIVDGRHEIGGTWSLFNYPGIRSD 291
                    9***************988899*****************999996554 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.86
                    EE--SHHHHHHHHHHHCCTEEEEEE- CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvllle 26 
                    I+G+G+++ ++   +a++ ++ + l+
     CCE29921.1 416 IIGSGATAVTLVPSMADKAAHTTMLQ 441
                    9******9998766666666666655 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.7e-09   2.4e-06       1     178 [.     240     447 ..     240     477 .. 0.74
   2 ?   -0.9   0.0      0.55   7.6e+02     217     240 ..     558     582 ..     539     600 .. 0.63

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.7e-09
                  CSEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...........................HHHHCHHHHCCC CS
                  xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvaedaeias...........................evvkklnqgiel 69 
                  +dv++iG+G  G+++a +l++   ++   +v ++++  +g+ +l   + g+++d + ++                              + + ++i++
   CCE29921.1 240 FDVIIIGAGLSGINFAYRLQErnPNLSYCIV-DGRHEIGGTWSL-FNYPGIRSDSDLFTfgfswrpweeqqpiaqgarileyikasAAQEGIDKKIKF 335
                  69*******************6336666666.555444444444.45555555555555777888888888888888889998888444567778888 PP

                  CHCCTCEEEEESC..EEEEETEEECTCEEEEEESEEEE---E....EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHH CS
                  xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  70 llgeevvkidpgk..kkvklekkkegdeekiaydklvlAtGs....sprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaal 161
                   ++++ v+   ++   k+ ++++  +d  +++   ++l tG     +p + +ipG  +  g++  +  +  +  l+ ++k++v++G+G+++v l   +
   CCE29921.1 336 NHRVNSVDWSSESstWKFDITANA-SDPVSLQSRFVFLGTGYydynEPLKAHIPGIDDFEGTV--IHPQFWPKDLDYTNKDVVIIGSGATAVTLVPSM 430
                  888776666655511244444443.77789999********8776677777*****7777666..6666666666666688***************** PP

                  HHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 162 aklgkevtlveardrll 178
                  a+ ++++t++++ ++  
   CCE29921.1 431 ADKAAHTTMLQRSPTYI 447
                  **********9998755 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.55
                  E.EEETTSCEEEESEEEE-S-EEES CS
                  x.xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 217 e.vvledgeeidadlvvvavGvrps 240
                  +   l++g+e+  d +v+a+G++  
   CCE29921.1 558 KtIRLKSGREMHPDIIVTATGLKVH 582
                  2255667777777777777776654 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.3e-06    0.0018       1      36 [.     241     276 ..     241     292 .. 0.90
   2 ?    1.4   0.0     0.095   1.3e+02       1      33 [.     413     443 ..     413     450 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.3e-06
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    Dv++iGaG+ g+  A rl e +p+l+ +++++  ++
     CCE29921.1 241 DVIIIGAGLSGINFAYRLQERNPNLSYCIVDGRHEI 276
                    9*****************************998776 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.095
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieas 33 
                    Dvv+iG+G+  + l   +  a ++ + ++++ s
     CCE29921.1 413 DVVIIGSGATAVTLVPSM--ADKAAHTTMLQRS 443
                    9***********999999..4444455555545 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0059       8.1       3      39 ..     240     276 ..     238     282 .. 0.89
   2 !   13.0   0.0   2.1e-05     0.029     191     267 ..     326     402 ..     313     416 .. 0.79
   3 ?   -1.9   0.0      0.64   8.8e+02       2      18 ..     411     427 ..     410     439 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0059
         Mqo   3 vdvvliGaGimsatlgvllkelepelsievlerldkv 39 
                  dv++iGaG+    ++  l+e +p+ls  +++  +++
  CCE29921.1 240 FDVIIIGAGLSGINFAYRLQERNPNLSYCIVDGRHEI 276
                 69*************************9999876655 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.1e-05
         Mqo 191 ekkkgvelklkhevkdlkreed.gkWkvkvkdlktgekkkvkakfvfiGaGGgalklLqksgipeakgyggfPvsGqf 267
                 ++  + ++k++h+v++++ +++  +Wk +++  + ++  +++++fvf+G+G    +   k++ip ++++ g  +  qf
  CCE29921.1 326 QEGIDKKIKFNHRVNSVDWSSEsSTWKFDITA-NASDPVSLQSRFVFLGTGYYDYNEPLKAHIPGIDDFEGTVIHPQF 402
                 34456789*********97655278*****95.6778899***********999888888888888888887666555 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.64
         Mqo   2 kvdvvliGaGimsatlg 18 
                 ++dvv+iG+G  + tl 
  CCE29921.1 411 NKDVVIIGSGATAVTLV 427
                 67999999999999985 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.3e-06    0.0032       1      46 [.     241     290 ..     241     364 .. 0.76
   2 ?   -1.2   0.0      0.83   1.1e+03       1      12 [.     413     424 ..     413     443 .. 0.88
   3 ?   -0.1   0.0      0.38   5.3e+02     180     227 ..     558     598 ..     488     637 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.3e-06
                 EEEEECTSHHHHHHHHHHHHTT....EEEEESSSSTTSSGGGSSEEEEES CS
         DAO   1 dvviiGGGiiGlstAyeLarrg....VtllekgdiagsgaSgrnsgllhs 46 
                 dv+iiG+G  G+  Ay L++r+     ++++ ++++g   S  n   ++s
  CCE29921.1 241 DVIIIGAGLSGINFAYRLQERNpnlsYCIVDGRHEIGGTWSLFNYPGIRS 290
                 9******************995589********9**96666666555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.83
                 EEEEECTSHHHH CS
         DAO   1 dvviiGGGiiGl 12 
                 dvviiG+G + +
  CCE29921.1 413 DVVIIGSGATAV 424
                 8*******9865 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.38
                 EEEEEECTEEE.EEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEE CS
         DAO 180 wgverttpgen.daadavVnaaGawsdllgllkeldlpispvrgqvlvl 227
                 +++ r ++g++ +  d +V a+G+ + l+   + +  + + v gq + l
  CCE29921.1 558 KTI-RLKSGREmHP-DIIVTATGLKVHLA---GGI--K-VSVDGQAISL 598
                 222.3333555444.66666666665544...333..3.4444444444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0043       5.9       2      21 ..     242     261 ..     241     277 .. 0.86
   2 !    8.5   0.0    0.0021       2.8       2      34 ..     414     446 ..     413     455 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0043
                 EEEECSSHHHHHHHHHHHHT CS
   Pyr_redox   2 vvvvGgGyiglElAgalael 21 
                 v+++G+G++g+ +A  l+e 
  CCE29921.1 242 VIIIGAGLSGINFAYRLQER 261
                 89************999875 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0021
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkl 34 
                 vv++G+G +++ l   +a+ ++++t+++rs++ 
  CCE29921.1 414 VVIIGSGATAVTLVPSMADKAAHTTMLQRSPTY 446
                 8****************************9875 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     3e-05     0.042       1      37 [.     241     279 ..     241     282 .. 0.84
   2 ?    0.2   0.0      0.22     3e+02       1      14 [.     413     426 ..     413     445 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3e-05
                    SEEEE--SHHHHHHHHHHHHTTT..-EEEEESSSGGGSG CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGl..kvavvekeqefgga 37 
                    Dvi+iG+Gl+G   A++++e++   + ++v+  +e gg+
     CCE29921.1 241 DVIIIGAGLSGINFAYRLQERNPnlSYCIVDGRHEIGGT 279
                    9*******************5432489999988888875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.22
                    SEEEE--SHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaA 14 
                    Dv++iGsG+   + 
     CCE29921.1 413 DVVIIGSGATAVTL 426
                    9*******976665 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00093       1.3       2      42 ..     244     280 ..     243     286 .. 0.83
   2 ?   -0.3   0.0      0.66   9.2e+02       1      20 [.     415     434 ..     415     444 .. 0.83
   3 ?   -0.4   0.0      0.76     1e+03     132     154 ..     556     578 ..     539     580 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00093
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdpsepgagrvw 42 
                    i+GaG +G+ ++ rL +r     +l+  ++d ++   g+ w
     CCE29921.1 244 IIGAGLSGINFAYRLQER---NPNLSYCIVDGRHEI-GGTW 280
                    9*****************...589999999995554.4666 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.66
  NAD_binding_9   1 aivGaGprGlavlerLlara 20 
                    +i+G G+++++++  ++++a
     CCE29921.1 415 VIIGSGATAVTLVPSMADKA 434
                    79*********998888876 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.76
  NAD_binding_9 132 dgqavlladgaslaadaVvLAlG 154
                    +  +++l++g++++ d +v A+G
     CCE29921.1 556 TAKTIRLKSGREMHPDIIVTATG 578
                    456899****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4735.99
//
Query:       CCE29922.1  [L=1397]
Description: related to ATP-binding multidrug cassette transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-83  277.1  46.0      1e-45  155.7  21.9    2.4  2  ABC2_membrane    ABC-2 type transporter
    1.6e-39  135.6   0.0    4.5e-19   69.3   0.0    2.4  2  ABC_tran         ABC transporter
    5.4e-27   93.5   6.0    4.2e-25   87.5   0.0    3.6  3  PDR_CDR          CDR ABC transporter
    1.9e-09   37.1  28.0    2.6e-06   26.8   8.9    2.6  3  ABC2_membrane_3  ABC-2 family transporter protein
    7.8e-07   29.6   0.5    0.00073   20.0   0.2    2.4  2  AAA_16           AAA ATPase domain
    7.7e-06   25.9   0.0    0.00075   19.4   0.0    2.6  2  RsgA_GTPase      RsgA GTPase
    8.1e-06   26.2   0.1       0.25   11.6   0.0    3.1  3  AAA_22           AAA domain
      6e-05   22.7   0.1      0.002   17.7   0.1    2.3  2  AAA_25           AAA domain
    7.3e-05   22.4   0.8      0.014   15.1   0.1    2.7  2  AAA_29           P-loop containing region of AAA domain
    0.00023   21.4   0.0       0.83    9.8   0.0    2.5  2  AAA_33           AAA domain
     0.0014   18.3   1.1       0.71    9.4   0.4    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0015   19.1   0.1       0.87   10.1   0.0    2.8  2  AAA_18           AAA domain
     0.0061   16.8   0.9       0.63   10.3   0.6    2.5  2  AAA_28           AAA domain
  ------ inclusion threshold ------
      0.011   15.8   0.2        3.6    7.7   0.0    2.5  2  MMR_HSR1         50S ribosome-binding GTPase
      0.012   15.4   0.0        1.1    9.0   0.0    2.5  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.043   13.5   0.3        2.3    7.9   0.3    2.4  2  AAA_30           AAA domain
      0.044   13.7   0.9        1.3    9.0   0.2    2.4  2  NACHT            NACHT domain
      0.055   13.4   0.0        2.4    8.0   0.0    2.5  2  ATPase_2         ATPase domain predominantly from Archaea
      0.055   13.2   0.7        5.8    6.7   0.2    2.6  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.057   13.8   0.2        3.1    8.2   0.0    2.5  2  AAA_17           AAA domain
      0.078   12.4   0.0        3.8    6.9   0.0    2.7  3  SMC_N            RecF/RecN/SMC N terminal domain
      0.084   11.9   0.0       0.92    8.5   0.0    2.1  2  T2SSE            Type II/IV secretion system protein
        0.1   11.9   0.0          3    7.1   0.0    2.3  2  DnaB_C           DnaB-like helicase C terminal domain
       0.11   11.2   0.1       0.17   10.5   0.1    1.2  1  MRVI1            MRVI1 protein
       0.13   11.5   0.2        4.1    6.6   0.2    2.3  2  Zeta_toxin       Zeta toxin


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.7  21.9   1.4e-48     1e-45       1     210 []     418     628 ..     418     628 .. 0.97
   2 !  127.1  16.1   8.5e-40   6.1e-37       1     202 [.    1094    1298 ..    1094    1300 .. 0.98

  Alignments for each domain:
  == domain 1  score: 155.7 bits;  conditional E-value: 1.4e-48
  ABC2_membrane   1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsa 95 
                    +qik+++ r+++ +w++++++ + + + ++++al+ g++f++++ +s++ +   g++ff++lf++++++++v + ++ +r++l+++ ++ +++++a
     CCE29922.1 418 QQIKTCVVRQYQIIWGNKATL-MIKQVGTVMQALIAGSLFYSAPsTSAGLFVKSGACFFALLFNSLMSMSEV-TDSFGGRPILVKHKSFAFFHPAA 511
                    69****************877.99********************666666699************8888888.*********************** PP

  ABC2_membrane  96 yvlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm.pkw 188
                    ++la++++++pv+llq+ +f++i yf+vgl+++  +ff f+++l++t++++++l+++i+a +++f+ as l++lv++ ++++ G++i +++m p w
     CCE29922.1 512 FCLAQIAADIPVILLQISVFSIILYFMVGLTMNagAFFTFVVILVATTFCMTALFRFIGASFRTFDGASKLSGLVITATIMYNGYMIRKPQMhP-W 606
                    *********************************9999*******************************************************77.* PP

  ABC2_membrane 189 lqwiaylnPltyavealrsnlf 210
                    + w+ ++ Pl+ya++al+sn+f
     CCE29922.1 607 FVWLFWVDPLAYAFDALLSNEF 628
                    ********************98 PP

  == domain 2  score: 127.1 bits;  conditional E-value: 8.5e-40
  ABC2_membrane    1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvl.erelvsplysl 93  
                     +q+k+++ r   + +r++ +    +l  +++ al+ g+ f+ +g+s + l+   + +f ++f+a   l++++p+f+ +r ++ +re  s++ys+
     CCE29922.1 1094 EQVKTVTHRMNVSLYRNTDYV-NNKLTLHIFSALFNGFSFWMVGDSVGDLQLKLFTIFNFIFVAPGVLAQLQPLFIHRRDIFeAREKKSKMYSW 1186
                     599******************.99********************9999999******************************************* PP

  ABC2_membrane   94 sayvlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm 185 
                      a+v++ +++e+p+ ++ a+++++++y++vg++ s  r +  ++++l++ ++ +++g +++a+ap+   a+++ +l++ +l+ ++G+++p++++
     CCE29922.1 1187 VAFVTGLIVSEIPYLIMGAALYFVCWYYTVGFHTSsdRAGATFFVMLMYEFLYTGIGQFVAAYAPNKVFAALVNPLLIGILVSFCGVLVPYSQI 1280
                     ***********************************9999******************************************************* PP

  ABC2_membrane  186 .pkwlqwiaylnPltyav 202 
                      p w +w++ylnP+ y++
     CCE29922.1 1281 qPFWRYWMYYLNPFNYLM 1298
                     999999**********86 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   2.8e-20     2e-17       1     136 [.      95     254 ..      95     255 .. 0.89
   2 !   69.3   0.0   6.3e-22   4.5e-19       1     137 []     800     951 ..     800     951 .. 0.91

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 2.8e-20
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................. 79 
                 l+n +  +k+ge++ ++G+ G+G++tLl+ll+++ +     +G++ +   ++k+++ e +r +i + ++e+ +fp+ltv+++                 
  CCE29922.1  95 LDNSHGCVKPGEMLLVLGRPGSGCTTLLNLLTNKRRGyekVSGDVFYG--SMKSEDAECYRGQIVMNTEEEVFFPTLTVGQTmdfatrlkqnfhlsdga 191
                 6888999*************************8866544489999776..555567******************************************* PP

                 ....HHHTC.HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ....xxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdee.iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                     +++++  e +l+++g++++ +t+v++   + +SgG+++rv++ ++l+++ +++++D+ t
  CCE29922.1 192 tdpeQQRVQmKEFLLRSMGIEHTVNTKVGDAFtRGVSGGERKRVSIIECLASRGSVFCWDNST 254
                 99876666634557899***********99888***************************987 PP

  == domain 2  score: 69.3 bits;  conditional E-value: 6.3e-22
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................es 81 
                 l++v+  +k+g+++a++G++GaGK+tLl +la+  +     G+il+dg++l      s++++ g+++q + + +  tvre                 + 
  CCE29922.1 800 LDDVQGWVKPGSLTALMGSSGAGKTTLLDVLAQRKTEgtIHGSILVDGRPLPV----SFQRSAGYCEQLDVHESYATVREAlefsallrqsrdtprqQ- 893
                 6889999*************************999877789999******999....9*****************************99877764444. PP

                 HTC...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                 xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran  82 dee...iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137
                   +   ++++++ l+l++l dt +++ ++ LS  q++rv +   l+ kp++ll lDEpt+
  CCE29922.1 894 --KlayVDTIIDLLELHDLSDTLIGEVGAGLSVEQRKRVTIGVELVAKPSILLfLDEPTS 951
                 ..1566*******************************************987649***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   3.4       5.6     4e+03      46      72 ..     541     567 ..     534     574 .. 0.86
   2 !   87.5   0.0   5.8e-28   4.2e-25       1      90 [.     641     728 ..     641     730 .. 0.96
   3 ?    6.0   0.0     0.015        11      30      75 ..    1348    1393 ..    1340    1397 .] 0.74

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.6
     PDR_CDR  46 lwrnfgiliaflifflalyllatelis 72 
                 l+ n g  + f+++ +a+++++t l++
  CCE29922.1 541 LTMNAGAFFTFVVILVATTFCMTALFR 567
                 56899999*********9999998876 PP

  == domain 2  score: 87.5 bits;  conditional E-value: 5.8e-28
     PDR_CDR   1 vPsgpgyenvseenrvCa.vvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevlvfkrgkapk 90 
                 vPsgp ++  +e++++Ca v GavpGq yV+Gd+Yl+ s++ys+shlwrnfgi++a++++f+ l++++t+ ++a+++ g  l ++r+++++
  CCE29922.1 641 VPSGPDFS--DEDHQACAgVGGAVPGQPYVDGDAYLA-SLSYSHSHLWRNFGIVWAWWALFVSLTIVMTSRWRASSEAGPSLSIPRDTSQA 728
                 8******9..69******999****************.9**********************************************998765 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.015
     PDR_CDR   30 sGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaek 75  
                  + +dYl++    ++   wr+ gi+++f++   al   +++l ++++
  CCE29922.1 1348 DAQDYLRTLNLSEYYLGWRDAGIVVLFVFSSYALVYALMKLRTKTS 1393
                  56778874433445557***********998888888888766665 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   8.9   3.6e-09   2.6e-06     187     344 ..     495     703 ..     359     704 .. 0.76
   2 !   17.9   8.6   1.9e-06    0.0014     208     318 ..    1187    1305 ..    1147    1336 .. 0.81
   3 ?   -3.3   0.0       5.3   3.8e+03     166     185 ..    1370    1389 ..    1343    1395 .. 0.54

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.6e-09
  ABC2_membrane_3 187 kesrikelqlvsgvsplqywlskilgdflvyllqlllilll...afglgipfg.nlglll.llfllfglayialgyllsslfknsetaqilifi 275
                      +   +k+  +     p+++ l+ i +d  v llq+ ++ ++   ++g  ++++ + ++++ + ++   ++++al+ ++++ f++ + a+ l ++
       CCE29922.1 495 RPILVKHKSFAF-FHPAAFCLAQIAADIPVILLQISVFSIIlyfMVG--LTMNaGAFFTFvVILVATTFCMTALFRFIGASFRTFDGASKLSGL 585
                      555566666666.78999****************9877664344777..888886666665888888**********************99999 PP

  ABC2_membrane_3 276 villlsgffgglfp.ledlpsalkwifsiiPffapglgllrli........tgdplwe.................................... 324
                      vi  + + + g ++  ++++ ++ w+f++ P+ + +++ll+           g++l++                                    
       CCE29922.1 586 VIT-ATIMYNGYMIrKPQMHPWFVWLFWVDPLAYAFDALLSNEfhgkripcVGNNLVPsgpdfsdedhqacagvggavpgqpyvdgdaylasls 678
                      998.55555555555899********************97663345555553333333777888888888888888888888888888888888 PP

  ABC2_membrane_3 325 .....illsliilalfavvylllal 344
                           ++++++i ++  ++++ l++
       CCE29922.1 679 yshshLWRNFGIVWAWWALFVSLTI 703
                      8888888888888888888888776 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.9e-06
  ABC2_membrane_3  208 skilgdflvyllqlllill.lafgl........gipfgnlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfpl 290 
                       + +++ ++v+ +++l++ + l+f +          + +  g++++++l++ ++y+ +g ++ +   n + a ++ +++i +l  f+g+l+p 
       CCE29922.1 1187 VAFVTGLIVSEIPYLIMGAaLYF-VcwyytvgfHTSSDRAGATFFVMLMYEFLYTGIGQFVAAYAPNKVFAALVNPLLIGILVSFCGVLVPY 1277
                       55777777777888888774322.2244444323444488****************************9998877777779*********** PP

  ABC2_membrane_3  291 edlpsalkwifsiiPffapglgllrlit 318 
                       +++  +++++++++  f + +g   l+t
       CCE29922.1 1278 SQIQPFWRYWMYYLNPFNYLMGTNELAT 1305
                       ************9977777766666665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.3
  ABC2_membrane_3  166 liliilifitasfiavsive 185 
                       ++++++++ +a++ a + ++
       CCE29922.1 1370 IVVLFVFSSYALVYALMKLR 1389
                       33333333333333333344 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0074       5.3      17      46 ..      99     127 ..      86     159 .. 0.78
   2 !   20.0   0.2     1e-06   0.00073      23     107 ..     810     949 ..     797    1005 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0074
      AAA_16  17 ervrsgrpelvllsGesGvGKsslvrellr 46 
                 +   +++ e++l+ G +G+G ++l++ l +
  CCE29922.1  99 HGCVKPG-EMLLVLGRPGSGCTTLLNLLTN 127
                 4444443.9****************99985 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellralekd...............ggif..lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleea 104
                 + +l+ l G sG GK++l++ l+++ ++                   f   +g c+ql+   +y+++ +al+++ llrq  d +++++l++ ++ ++  
  CCE29922.1 810 G-SLTALMGSSGAGKTTLLDVLAQRKTEGtihgsilvdgrplpvS--FqrSAGYCEQLDVHESYATVREALEFSALLRQSRDTPRQQKLAYVDTIIDLL 905
                 3.7899*****************7444448998899999888543..4459999999988899999*****************9999999888866554 PP

      AAA_16 105 la.........................................a 107
                                                            +
  CCE29922.1 906 ELhdlsdtligevgaglsveqrkrvtigvelvakpsillfldeP 949
                 44555555555444444444444444444444444444444443 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.077        55     100     125 ..     106     130 ..      62     153 .. 0.81
   2 !   19.4   0.0     1e-06   0.00075      87     124 ..     797     835 ..     773     895 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.077
                  SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelel 125
                  ++ +++G  G G +tL+n l+++ + 
   CCE29922.1 106 EMLLVLGRPGSGCTTLLNLLTNK-RR 130
                  78899***************987.44 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1e-06
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpele 124
                  +  l++++ ++k  ++++l+G+SG+GK+tL+++l+++++
   CCE29922.1 797 RLLLDDVQGWVKPgSLTALMGSSGAGKTTLLDVLAQRKT 835
                  556789999999889*******************99754 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.3   3.1e+03      48      89 ..      60     101 ..      36     105 .. 0.77
   2 !   10.8   0.0   0.00061      0.44       5      78 ..     105     201 ..      99     215 .. 0.78
   3 !   11.6   0.0   0.00035      0.25       5      38 ..     810     848 ..     807     924 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.3
      AAA_22  48 psstsskdllrellralglelkaerlsseellealeqalrar 89 
                  + +s + + +++l+++++++ a++ +++  l+++ ++++ +
  CCE29922.1  60 EARSSHSVIHENVLSQFNVSKIARESRRKPPLKTILDNSHGC 101
                 4444556779999*****999998888888889999999887 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00061
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee......................erpevvfvtlpsstsskdllrellralglelka..erlsseel 78 
                   +l+v G +G+G Ttll+ l+++   ++k                          + ev+f tl+++    d++++l ++++l+  a  +++++ ++
  CCE29922.1 105 GEMLLVLGRPGSGCTTLLNLLTNKRRGYEKVSGdvfygsmksedaecyrgqivmnTEEEVFFPTLTVGQ-TMDFATRLKQNFHLSDGAtdPEQQRVQM 201
                 5689*********************99988888999999999999988777777767777777777777.8899999999999988884433333333 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00035
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.....e 38 
                  ++++++G sG+GKTtll  l+++++e   +       +
  CCE29922.1 810 GSLTALMGSSGAGKTTLLDVLAQRKTEGTIHGSilvdgR 848
                 57899****************999976655544555541 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.15   1.1e+02      18      50 ..      87     122 ..      74     127 .. 0.76
   2 !   17.7   0.1   2.8e-06     0.002      26      60 ..     803     837 ..     797     855 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.15
      AAA_25  18 pppprrwlvk...gllpagelallaGapgtGKttla 50 
                 + pp++ +++   g++  ge  l+ G+pg+G ttl+
  CCE29922.1  87 RKPPLKTILDnshGCVKPGEMLLVLGRPGSGCTTLL 122
                 566666666522279******************997 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 2.8e-06
      AAA_25  26 vkgllpagelallaGapgtGKttlaldlalavatG 60 
                 v+g++  g+l++l+G +g+GKttl+  la   ++G
  CCE29922.1 803 VQGWVKPGSLTALMGSSGAGKTTLLDVLAQRKTEG 837
                 79***********************9999776666 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.031        22      19      39 ..     102     122 ..      94     137 .. 0.80
   2 !   15.1   0.1     2e-05     0.014      21      42 ..     809     830 ..     800     832 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.031
      AAA_29  19 idlkgatlltGpsGsGKSTll 39 
                 +++ ++ l+ G+ GsG +Tll
  CCE29922.1 102 VKPGEMLLVLGRPGSGCTTLL 122
                 5666799*************9 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2e-05
      AAA_29  21 lkgatlltGpsGsGKSTllDAi 42 
                 + + t l+G sG+GK+TllD +
  CCE29922.1 809 PGSLTALMGSSGAGKTTLLDVL 830
                 44589***************65 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0     0.002       1.4       2      47 ..     108     154 ..     107     215 .. 0.71
   2 !    9.8   0.0    0.0012      0.83       2      24 ..     813     835 ..     812     893 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.002
      AAA_33   2 vllvGlpGsGKstlaerllkklg.avllssdtlrrrlfgtdqqsktd 47 
                 +l+ G pGsG +tl+  l +k+  ++ +s d+++  ++ +d +  + 
  CCE29922.1 108 LLVLGRPGSGCTTLLNLLTNKRRgYEKVSGDVFYGSMKSEDAECYRG 154
                 7899*************9888778*************9977764443 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0012
      AAA_33   2 vllvGlpGsGKstlaerllkklg 24 
                 + l G +G+GK+tl++ l+++ +
  CCE29922.1 813 TALMGSSGAGKTTLLDVLAQRKT 835
                 5689**************99876 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0     0.005       3.6       3      27 ..     108     132 ..     106     158 .. 0.86
   2 !    9.4   0.4   0.00098      0.71       3      25 ..     813     835 ..     811     844 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.005
                 EEEEESTTCCHHHHHHHHHCT--SS CS
        cobW   3 tvltGflGsGKTtLlnhllenragl 27 
                 +++ G +GsG TtLln l+++r+g+
  CCE29922.1 108 LLVLGRPGSGCTTLLNLLTNKRRGY 132
                 67889**************888876 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00098
                 EEEEESTTCCHHHHHHHHHCT-- CS
        cobW   3 tvltGflGsGKTtLlnhllenra 25 
                 t l G+ G+GKTtLl  l +++ 
  CCE29922.1 813 TALMGSSGAGKTTLLDVLAQRKT 835
                 7899***********99986654 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.024        17       2      35 ..     109     143 ..     108     162 .. 0.81
   2 !   10.1   0.0    0.0012      0.87       3      88 ..     815     907 ..     814     944 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.024
      AAA_18   2 lltGtpGvGKttlakeLskrl.gfgvnlrdvaken 35 
                 l+ G pG+G ttl + L ++  g+  +++dv++ +
  CCE29922.1 109 LVLGRPGSGCTTLLNLLTNKRrGYEKVSGDVFYGS 143
                 689**************777669977777777664 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0012
      AAA_18   3 ltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpe........aldeskrldedkldklldaleenssaleegknlvidghlaeles 88 
                 l+G +G+GKttl + L++r +  g+++++++ ++++l   ++         +++es   +++   + + +l++++++ +++k  ++d ++  le 
  CCE29922.1 815 LMGSSGAGKTTLLDVLAQR-KTeGTIHGSILVDGRPLPVSFQRsagyceqlDVHESYATVREA-LEFSALLRQSRDTPRQQKLAYVDTIIDLLEL 907
                 899*************888.4558888888888887777777766666655455555554444.3344444444444444455555555555555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.072        51       4      27 ..     110     135 ..     108     167 .. 0.82
   2 !   10.3   0.6   0.00087      0.63       3      25 ..     814     836 ..     812     842 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.072
      AAA_28   4 itGgestGKTtlleaLaar..gypvv 27 
                 ++G +++G Ttll+ L+++  gy+ v
  CCE29922.1 110 VLGRPGSGCTTLLNLLTNKrrGYEKV 135
                 6899*************654699855 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00087
      AAA_28   3 vitGgestGKTtlleaLaargyp 25 
                 +++G +++GKTtll  La+r+++
  CCE29922.1 814 ALMGSSGAGKTTLLDVLAQRKTE 836
                 799***************99664 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0051       3.6       3      24 ..     109     130 ..     107     141 .. 0.82
   2 ?    5.6   0.1     0.022        16       3      23 ..     814     834 ..     812     842 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0051
                 EEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgeka 24 
                 +++Grp +G +tL+n lt+++ 
  CCE29922.1 109 LVLGRPGSGCTTLLNLLTNKRR 130
                 689****************954 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.022
                 EEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgek 23 
                 a++G + +GK+tL+  l ++k
  CCE29922.1 814 ALMGSSGAGKTTLLDVLAQRK 834
                 89*************999875 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0015       1.1       1      20 [.     812     831 ..     812     902 .. 0.84
   2 ?    3.7   0.0     0.063        45     256     295 ..     940     977 ..     933     987 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0015
      AAA_21   1 lnvliGpNgsGKSnLLdald 20 
                 l++l G  g+GK++LLd l 
  CCE29922.1 812 LTALMGSSGAGKTTLLDVLA 831
                 699***************93 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.063
      AAA_21 256 kkgsllliDEpEngLHPkllrrllellkelsrngaQvilt 295
                 ++  ll++DEp +gL+ +   + +++l++l++  +Q il+
  CCE29922.1 940 PS-ILLFLDEPTSGLDGQSAYHTVRFLRKLAA-VGQAILV 977
                 44.89**********98888888888877776.4555444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0       0.1        75      18      40 ..     105     127 ..      98     162 .. 0.80
   2 ?    7.9   0.3    0.0031       2.3      19      41 ..     811     833 ..     803     844 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.1
      AAA_30  18 drvavltGpAGtGKttalkalre 40 
                   + ++ G++G+G tt+l+ l++
  CCE29922.1 105 GEMLLVLGRPGSGCTTLLNLLTN 127
                 568899************99865 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0031
      AAA_30  19 rvavltGpAGtGKttalkalrea 41 
                  +++l G  G+GKtt+l +l++ 
  CCE29922.1 811 SLTALMGSSGAGKTTLLDVLAQR 833
                 58999*************99875 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.14        99       2      21 ..     107     126 ..     106     145 .. 0.85
   2 ?    9.0   0.2    0.0018       1.3       2      29 ..     812     839 ..     811     847 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.14
                 CEEEEC-TTTCHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkla 21 
                 ++++ G++GsG TtLl  l 
  CCE29922.1 107 MLLVLGRPGSGCTTLLNLLT 126
                 5799***********98765 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0018
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-S CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegkl 29 
                 l +l G +G GKTtLl  la+   eg+ 
  CCE29922.1 812 LTALMGSSGAGKTTLLDVLAQRKTEGTI 839
                 56899**************998777775 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0034       2.4      19      75 ..     104     163 ..      93     203 .. 0.83
   2 ?    2.4   0.0      0.18   1.3e+02      22      46 ..     812     836 ..     800     847 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0034
    ATPase_2  19 pneiyfiYGpegsGKtaLlkeiienledkdk..yviyyialreesiskldefie.eeeek 75 
                 p e++++ G+ gsG t+Ll+ + ++++ ++k    ++y ++++e+ + ++  i  ++ee+
  CCE29922.1 104 PGEMLLVLGRPGSGCTTLLNLLTNKRRGYEKvsGDVFYGSMKSEDAECYRGQIVmNTEEE 163
                 678899********************9999988889999999999988887776544433 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.18
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienled 46 
                    + G+ g GKt+Ll  +++++ +
  CCE29922.1 812 LTALMGSSGAGKTTLLDVLAQRKTE 836
                 556789***********99999865 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.054        39       4      31 ..     108     135 ..     106     144 .. 0.89
   2 ?    6.7   0.2     0.008       5.8       6      24 ..     815     833 ..     811     838 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.054
   PduV-EutP   4 illiGkvgsGKttLtqalkgeelkYkkt 31 
                 +l++G+ gsG ttL + l++++  Y+k 
  CCE29922.1 108 LLVLGRPGSGCTTLLNLLTNKRRGYEKV 135
                 6899*****************9999985 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.008
   PduV-EutP   6 liGkvgsGKttLtqalkge 24 
                 l+G++g+GKttL   l ++
  CCE29922.1 815 LMGSSGAGKTTLLDVLAQR 833
                 9***********9999876 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0044       3.1       1      46 [.     111     156 ..     111     174 .. 0.84
   2 ?    3.1   0.1      0.17   1.2e+02       2      18 ..     817     833 ..     816     846 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0044
                 EE-TTSSHHHHHHHHHHHH.TEEEEEHHHHHHHHHHTTTSHSSHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky.gfthlsaGdllreeakrgglakardem 46 
                 lG PGsG +t+++ l  k  g++ +s Gd+++  +k++ ++  r+++
  CCE29922.1 111 LGRPGSGCTTLLNLLTNKRrGYEKVS-GDVFYGSMKSEDAECYRGQI 156
                 699*********99987655******.*****999999876666665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.17
                 E-TTSSHHHHHHHHHHH CS
      AAA_17   2 GgPGsGKgtqceklvek 18 
                 G  G+GK+t+++ l+++
  CCE29922.1 817 GSSGAGKTTLLDVLAQR 833
                 889********999875 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         3   2.1e+03     136     185 ..     226     271 ..      62     278 .. 0.69
   2 ?    1.9   0.0      0.17   1.2e+02      25      44 ..     811     830 ..     803     832 .. 0.89
   3 ?    6.9   0.0    0.0052       3.8     156     204 ..     938     986 ..     934    1001 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke 185
                   SgGe++ v++   +A     + ++++ D+    LD++n  ++a+ +++
  CCE29922.1 226 GVSGGERKRVSIIECLAS----RGSVFCWDNSTRGLDASNALEYAKAIRA 271
                 567777776665555443....3456667888888888888888877776 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.17
                 SEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAi 44 
                 s+ta++G+ G+GK+ lld +
  CCE29922.1 811 SLTALMGSSGAGKTTLLDVL 830
                 579*************9965 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0052
                 CS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 156 vkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                 +kp+ l +lDe  + LD +     +++l++     Q i +++++   + 
  CCE29922.1 938 AKPSILLFLDEPTSGLDGQSAYHTVRFLRKLAAVGQAILVTIHQPSAQL 986
                 589999***********************************99876554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0013      0.92      91     151 ..      64     127 ..      30     135 .. 0.85
   2 ?    0.7   0.0      0.32   2.3e+02     134     151 ..     815     832 ..     776     884 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0013
       T2SSE  91 ealviRkksakeltlddlgaeealkekiaevlrka...vrerglilvsGgTgsGKttllyallk 151
                  + vi ++  +++++++++ e + k+ ++ +l ++   v+   ++lv G  gsG ttll+ l +
  CCE29922.1  64 SHSVIHENVLSQFNVSKIARESRRKPPLKTILDNShgcVKPGEMLLVLGRPGSGCTTLLNLLTN 127
                 55788899999**************999999987645488899*****************8765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.32
       T2SSE 134 vsGgTgsGKttllyallk 151
                 + G  g GKttll +l +
  CCE29922.1 815 LMGSSGAGKTTLLDVLAQ 832
                 57999********98766 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0042         3       9      60 ..      95     148 ..      92     183 .. 0.75
   2 ?    2.0   0.0      0.15   1.1e+02       9      44 ..     800     835 ..     797     845 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0042
                 HHHHCTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSE..EEEEESSSXH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
      DnaB_C   9 LDkltsGlqkgdliiiAarpsmGktalalniaenaavkeklp..vavfslemsa 60 
                 LD+  + +++g+++++ +rp+ G t+l   + ++    ek++  v + s+  ++
  CCE29922.1  95 LDNSHGCVKPGEMLLVLGRPGSGCTTLLNLLTNKRRGYEKVSgdVFYGSMKSED 148
                 899999********************9655555444333333236666665555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.15
                 HHHHCTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   9 LDkltsGlqkgdliiiAarpsmGktalalniaenaa 44 
                 LD++ + +++g l+ + + ++ Gkt+l   +a++ +
  CCE29922.1 800 LDDVQGWVKPGSLTALMGSSGAGKTTLLDVLAQRKT 835
                 788888889******************999887654 PP

>> MRVI1  MRVI1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00024      0.17     426     503 ..     384     462 ..     347     473 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00024
       MRVI1 426 neEavektkkqsLkEkeeeeskesvsskle.tlvsfltilkpklrkankvlWlvvaaivlf...avllslltsrlfqksvea 503
                 n++a +   k++L Ek  + +k++  sk +   v+fl+++k+ + ++++++W   a +++    +v+ +l ++ lf ++  +
  CCE29922.1 384 NQDAKQ---KTELFEKAVRMDKQKGVSKSSpLTVNFLQQIKTCVVRQYQIIWGNKATLMIKqvgTVMQALIAGSLFYSAPST 462
                 444443...4689999888887775555551569******************999988864222566678888888876555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.13        96      18      40 ..     107     129 ..      93     140 .. 0.80
   2 ?    6.6   0.2    0.0057       4.1      20      41 ..     814     835 ..     808     847 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.13
  Zeta_toxin  18 lillgGqpGAGKselaellkdel 40 
                 ++l+ G pG+G ++l++ll+++ 
  CCE29922.1 107 MLLVLGRPGSGCTTLLNLLTNKR 129
                 67888**************9984 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0057
  Zeta_toxin  20 llgGqpGAGKselaellkdele 41 
                  l G++GAGK++l++ l+++ +
  CCE29922.1 814 ALMGSSGAGKTTLLDVLAQRKT 835
                 5779***********9998853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 8840.20
//
Query:       CCE29923.1  [L=530]
Description: related to transcriptional activator Mut3p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-16   58.0   0.0    1.1e-15   57.4   0.0    1.3  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   6.1e-20   1.1e-15      75     266 ..     241     421 ..     180     422 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 6.1e-20
  Fungal_trans  75 raeilihedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklG 171
                   +a+ li++d +  +s +++lq+ l+l ly + +++  +  ++h +a+r++  lg hr    v ++++ + +e+e   +r l+w ++++Dk ial + 
    CCE29923.1 241 KAAQLIIADITEDAS-ITTLQTVLILLLYDILRGRFQASTMYHALACRIVFALGGHRLTVTVPRHRGMTIDEHEDRHLRMLFWLCYVFDKDIALRTS 336
                   444445567777777.*******************999999******************************************************** PP

  Fungal_trans 172 rppllddsqinlpLPcddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnWr 266
                    pp++ d+  +l LP+  d++ +   +   t           ++ +  + l+L+ i sk +  +l+ ++ l+ +d +   l+ ++el++ l+ Wr
    CCE29923.1 337 QPPIIADQFCDLTLPDGYDEYRFKCRMKSPTSG-------LVRDPWLPGDLRLSMIKSKTLE-TLYSCSSLRMSDAE--LLKTIRELDEDLESWR 421
                   ***************766655555555555554.......48999999***********999.66667777777777..9999**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3837.86
//
Query:       CCE29924.1  [L=228]
Description: uncharacterized protein CPUR_03771 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1067  (0.0595125); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1689.22
//
Query:       CCE29925.1  [L=239]
Description: uncharacterized protein CPUR_03772 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1760.73
//
Query:       CCE29926.1  [L=524]
Description: uncharacterized protein CPUR_03773 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-29  100.9   2.1    1.1e-28  100.4   2.1    1.2  1  Glyco_hydro_43  Glycosyl hydrolases family 43
    1.6e-22   80.2   0.0    2.7e-22   79.5   0.0    1.4  1  GH43_C2         Beta xylosidase C-terminal Concanavalin A-lik


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   2.1   1.2e-32   1.1e-28       3     288 .]      22     284 ..      20     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 1.2e-32
                     SESBCSSEESEEEEEETTCEEEEEEEBTEESEEEEEEESSSSSCEEEEEC...EESTTTCSTTTEECT....EEEEEE..EETTEEEEEEEEEET CS
  Glyco_hydro_43   3 nPvlsgfypDpsilrvgedyYlvtstfewfpglrifhSkdLvnWkqvgrv...lerrsqlsmkgknas....WAPeis..khdgkyylyytatkk 88 
                     +Pv+  + +D ++ r g+d+Y+ +s+  + pg ++ hS+dLvnW+ +g++   l++ s+ s++g na     +A +i+    dg+++ + ++   
      CCE29926.1  22 QPVMWEDLADLDVFRIGGDFYYSASSMHYSPGAPLLHSTDLVNWEYIGHSvptLDWGSKYSLQGGNAYvkgvFASSIRqrPSDGTWFWVGCV--- 113
                     79**********************************************8633379***********999********95567*********4... PP

                     TCCCSEEEEEEESSTTS--EECEESSCSTSSECEEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBBEEE CS
  Glyco_hydro_43  89 geakqgifvvtadspeGpwsdpiklktsgssgiDpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagtelkglkvtEG 183
                       + +  ++ ta s++Gpw++  + +  ++   D +l++dd+ + Y+++g+       ++i +a+l+ d +++++++++ +++g         EG
      CCE29926.1 114 --EYSHSYIYTAPSATGPWTKWAEYP--NQCFYDCGLLFDDNESPYIAYGS-------KTIQVAQLSSDLKTIVSTRAVYTYDGN-------AEG 190
                     ..67789******************7..88888******************.......6799***************9999**99.......9** PP

                     EEEEEETTEEEEEEEESTSSTTEEEEEEEESSTTSGGEEECTCCSEE.T.BTTSTSEEEEEEEEEE-TTSSEEEEEEEESCCTTCCGTTSSEEEE CS
  Glyco_hydro_43 184 PhlykrdgyyYLlaaeggtgseyavvvarsksllgPyewkkknpiltsr.speepiqgpGHaslvetpdgewyivyhagrpegrglytlgRetll 277
                       +yk++g+yY+l    +   +y   v +s+s++gPy+     ++l+    p  +  +p+++++v++p+g+wy++  + +       + gR ++l
      CCE29926.1 191 SRMYKIKGTYYILNIDPAKMVQY---VVKSTSVFGPYRSF---KLLDGPsCPIPGAGKPHQGGIVDDPQGNWYYMAFCDAF------PGGRVPVL 273
                     ************96433333233...58999*****8887...5666543566677778899*********9877777766......89****** PP

                     EEEEEETTSEE CS
  Glyco_hydro_43 278 qrvewkaDGwp 288
                      ++ +++ G+p
      CCE29926.1 274 APISFNDQGFP 284
                     ******88876 PP

>> GH43_C2  Beta xylosidase C-terminal Concanavalin A-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0     3e-26   2.7e-22       2     201 ..     312     521 ..     311     522 .. 0.78

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 3e-26
     GH43_C2   2 ddFdsdkLglqWqwlrnPkdedwyslterpgyLrLkgre.slsskeapsllarRqqafsftattklefepekegeeAGLvvyqneyhyyslevtkdekg 99 
                 + F+++ Lg+qW w++nP ++ + s+   +  L+L++++ + + ++a+++l++R+++++ +at+kl+++++++g+ AGLv++ + + ++ +      +g
  CCE29926.1 312 ETFQNTSLGPQWEWNHNPLTSAF-SV-GGNDRLTLRTASvTHDIYKARNTLTHRIPGPKSSATIKLSYSNMHYGDRAGLVLLRDLSSWIGIVNH---NG 405
                 57*****************8887.99.99*********988888********************************************887666...34 PP

     GH43_C2 100 krvl.rlvkadnge..........akeelkeekvplqtev....kevyLrlevee.....dkakfsysydgkeweeigeeldgtllsdefaeggFtGaf 178
                  + +   ++++               +  ++ ++p +++      +v+Lr++++      ++ +f ys+dg  +e+ig+     ++ +   +  F G +
  CCE29926.1 406 TSAIaVWANCTLTMdnnsiwstgsLGSLQASVDIPPPQNDaanpGSVWLRATADIapsgpHTVDFAYSFDGIAFEDIGD---PFVMVKS--WEFFLGYR 499
                 4444233334332112234433333444556666665532577778*******964555579****************8...2333334..47****** PP

     GH43_C2 179 vGlfatgngkessgyAdFdwfey 201
                  G+f++++  + +g + ++ f +
  CCE29926.1 500 YGIFNFAT-RALGGSVRVESFAI 521
                 ********.99999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3644.99
//
Query:       CCE29927.1  [L=296]
Description: related to short-chain alcohol dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-58  197.2   0.4    3.5e-58  196.9   0.4    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.8e-46  158.1   0.3    2.3e-46  157.7   0.3    1.1  1  adh_short        short chain dehydrogenase
    1.2e-09   38.3   0.1    1.7e-09   37.9   0.1    1.1  1  KR               KR domain
     0.0023   17.3   0.1     0.0039   16.5   0.1    1.3  1  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
  ------ inclusion threshold ------
      0.023   14.4   0.2      0.049   13.4   0.2    1.5  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9   0.4   9.8e-62   3.5e-58       4     232 ..      63     291 ..      58     293 .. 0.93

  Alignments for each domain:
  == domain 1  score: 196.9 bits;  conditional E-value: 9.8e-62
                   TSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   sgIG+a+A ++a+eGa v +++l ee+  +k++++ +e+ g +  ++ +D  ++e+++++v+ ++ek++++Dil+nna++     ++++++s++++ 
    CCE29927.1  63 SGIGAATAILFAKEGAAVTIAYLAEEEddAKNTKSRVEKAGGAchLISVDLVKRENCQKVVDFAMEKMKGIDILFNNAAYQMM-VEDIADLSEDQWV 158
                   8************************998778888877777766335************************************9.9************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleele 193
                   +++++n++++f++ak+al++m++g+ i+n +s+ a ++ p+   y+ +K+a++++tr l +++ +kgiRvNav+pgp+ T++  +  + ++ ++e  
    CCE29927.1 159 HTFNINMHAYFYMAKYALRHMQPGSVIINNASINAYVGRPDLLDYTSSKGAIVSFTRGLSNQYLSKGIRVNAVAPGPVWTPLIPATMN-EKAQKE-- 252
                   **********************************************************************************877763.444444.. PP

                   HHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 194 araplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                     +p+gr ++p+e+a +++fLas ++s ++Gqt++ +gG
    CCE29927.1 253 FTSPMGRPAQPSEIATCVVFLASADSSCVSGQTIHCNGG 291
                   469***********************************9 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7   0.3   6.5e-50   2.3e-46       1     187 [.      54     241 ..      54     250 .. 0.96

  Alignments for each domain:
  == domain 1  score: 157.7 bits;  conditional E-value: 6.5e-50
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE..EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGC CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv..vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfsel 96 
                 k +l+tG++sGIG a+a  +akeGa v++  ++++e++++++++ ++++g   + i+vD+ +re+++++v+ a++k++++d+L nNA+    ++++++l
  CCE29927.1  54 KRALITGGDSGIGAATAILFAKEGAAVTIayLAEEEDDAKNTKSRVEKAGGACHLISVDLVKRENCQKVVDFAMEKMKGIDILFNNAAYqMMVEDIADL 152
                 679************************99888999999***************************************************778899**** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 se++w  ++++N++++f +++ +l++m    +  I+n +S+++ v+ + +  Y++sK+a++++tr l++++ ++girvnavaPG+v T++ 
  CCE29927.1 153 SEDQWVHTFNINMHAYFYMAKYALRHMQ--PGSVIINNASINAYVGRPDLLDYTSSKGAIVSFTRGLSNQYLSKGIRVNAVAPGPVWTPLI 241
                 **************************86..999*****************************************************99975 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   4.6e-13   1.7e-09       4     165 ..      57     219 ..      55     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 4.6e-13
                 EEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE.---------TTT- CS
          KR   4 litGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvih.aAgvlrdklleem 100
                 litGG  g+G ++a   a++g a ++++l+ +   ++d+k++ +++e+ g  ++++++D+ ++++ +++++ + ++++ i   ++ aA  ++ + ++++
  CCE29927.1  57 LITGGDSGIGAATAILFAKEGaAVTIAYLAEE---EDDAKNTKSRVEKAGGACHLISVDLVKRENCQKVVDFAMEKMKGIDILFNnAAYQMMVEDIADL 152
                 9********************77889999888...566667788999***********************************99725667889****** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs 165
                 +++++ + ++  +++   + ++  +  ++  +++  +Si + +g +   +Y++    + ++ +  ++
  CCE29927.1 153 SEDQWVHTFNINMHAYFYMAKYALRhmQPGSVIINNASINAYVGRPDLLDYTSSKGAIVSFTRGLSN 219
                 *******************998777689999********************9987666666555544 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.1e-06    0.0039      33     112 ..      50     130 ..      43     150 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-06
                    --TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B-GGGS-TT-E..EEE---EEC CS
  THF_DHG_CYH_C  33 elegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpelikaemvkegav..viDvGinrv 112
                    +l+gk++++ G  + +g + a+l+++++a Vt++  + ++ +++ ++   v  a G  +li+ + vk++++  v+D  ++++
     CCE29927.1  50 KLKGKRALITGGDSGIGAATAILFAKEGAAVTIAYLAEEEDDAK-NTKSRVEKAGGACHLISVDLVKRENCqkVVDFAMEKM 130
                    799******************************98876554444.4444578999***********9987555899888877 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   1.4e-05     0.049      36      74 ..      51      87 ..      40      92 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
                     ---.-SEEEEESTSSHHHHHHHHHHHHSS--EEEEEE-- CS
  Eno-Rase_NADH_b 36 iekgpkkvLviGaStGYGLAsriaaafgagadtigVsfe 74
                     ++   k++L+ G+ +G G A+ i  a +  a ti    e
       CCE29927.1 51 LK--GKRALITGGDSGIGAATAILFAKEGAAVTIAYLAE 87
                     33..59**********************99*99986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.58
# Mc/sec: 1547.23
//
Query:       CCE29928.1  [L=810]
Description: uncharacterized protein CPUR_03775 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-36  123.4   0.1    8.9e-36  122.6   0.1    1.4  1  DUF3336   Domain of unknown function (DUF3336)
      1e-20   74.8   0.0    1.9e-20   73.9   0.0    1.5  1  Patatin   Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> DUF3336  Domain of unknown function (DUF3336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.1   9.9e-40   8.9e-36       6     123 ..      77     195 ..      71     210 .. 0.93

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 9.9e-40
     DUF3336   6 gkrkklrkklrkattYeeWkeaAkeLDellgndeWkendes.yYdyklvkkvlkkLrklrekedlkellellrtclkrNfagienprLYsetyiGTKkl 103
                 +kr++   ++++a+tY++W +aA+ LD+l gnd+Wk++ e+ +Yd+ l++++l+ L+++r++ d+++ ++l+rt+l+r ++g++n +LY+++yiGTKkl
  CCE29928.1  77 QKREESLGEMKSAETYQQWSAAASGLDQLDGNDRWKHDTEDgEYDFWLIQERLSALDEARASGDVRATMHLIRTELSRGLGGMDNVDLYRHSYIGTKKL 175
                 678888999****************************************************************************************** PP

     DUF3336 104 ieeYidevekalellaetkq 123
                 ie+Y+d ++++++ l+ +++
  CCE29928.1 176 IERYVDSAIQSIDALVCQST 195
                 *************9986644 PP

>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   2.2e-24   1.9e-20       1     199 [.     222     414 ..     222     418 .. 0.86

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 2.2e-24
     Patatin   1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalg..rdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaea 97 
                 L lsGGG+ g  ++g+lkaL  e    ++iisG+SaG+i+ + +++   +  ++l +++   +l+ ++  d     ++ +   +l++ll++g+ ++ ++
  CCE29928.1 222 LLLSGGGTFGMTHIGVLKAL-FEQQLLPRIISGSSAGSIVCAVMCTKndQEIPELIQAFPFGDLAVFEEED-----SSLGILGHLRRLLTEGSWCNIDN 314
                 679****************9.9*******************888888333344566666666777777777.....9********************** PP

     Patatin  98 lrellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglf...............pp 181
                 l++ +r++++d+t++++  r +++                  +  +++++ +    l+++ ++++v +++av+ S+++P+++               + 
  CCE29928.1 315 LKRVMRGMMGDMTFQEAYNRTRRI-----------------LNICVSTASIYELPRLLNYVTAPNVMIWSAVASSCSLPLVYksspllvkdpatgehH- 395
                 ************************.................799**************************************7755555544444433. PP

     Patatin 182 vsldge......lyvDGGilsNvP 199
                             +++DG++ + +P
  CCE29928.1 396 -----PwiptpqHFIDGSLDNDLP 414
                 .....0555555******887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5506.97
//
Query:       CCE29929.1  [L=217]
Description: probable PRX1-mitochondrial isoform of thioredoxin peroxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-31  107.7   0.0      5e-31  107.2   0.0    1.2  1  AhpC-TSA    AhpC/TSA family
    3.9e-13   49.3   0.0    5.3e-13   48.9   0.0    1.2  1  Redoxin     Redoxin
    3.2e-08   33.3   0.0    5.5e-08   32.5   0.0    1.4  1  1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.0   8.3e-35     5e-31       2     123 ..       8     144 ..       7     145 .. 0.96

  Alignments for each domain:
  == domain 1  score: 107.2 bits;  conditional E-value: 8.3e-35
                 TSB----EEESTTCEEEECHHH.TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.......SSEEEE-TTSH CS
    AhpC-TSA   2 gdkapdfelknadgetvslsdy.kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes......lnfpllsDeegk 93 
                 g  ap f++   + +++++++y +g++++lf +p+d++pvCttel a+akl +ef++rgv+++g+s+d+ +sh+ +i+++       ++fp+++D+++ 
  CCE29929.1   8 GSTAPGFTADS-NIGKIDFHKYiEGSWAILFSHPQDFTPVCTTELGAFAKLEPEFTKRGVKLLGLSADTIDSHATWIKDIAevtggnVQFPIIADPDRV 105
                 889******75.569************************************************************************************ PP

                 HHHHTT-EETT.........TTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  94 vakaygvlkee.........kglalratfvidkegkiry 123
                 va +y++++ +           l++r++f+id++++ir 
  CCE29929.1 106 VASQYDMIDHQdpsnidrnaLPLTIRSVFFIDPKKTIRT 144
                 ********999********999***************95 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   8.8e-17   5.3e-13       3     143 ..       8     156 ..       6     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 8.8e-17
                 TSBB---ECCEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH......TT-TSEEEE-TT CS
     Redoxin   3 gdkaPdftlplaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk......eglkfpvlsDgs 94 
                 g++aP ft   a+++  +++ ++  +g  +++++ p  f+P+C++e+ +++kl++++ ++gv+ ++++ad+ +    ++++       +++fp+++D++
  CCE29929.1   8 GSTAPGFT---ADSNIGKIDFHKyIEGSWAILFSHPQDFTPVCTTELGAFAKLEPEFTKRGVKLLGLSADTIDSHATWIKDiaevtgGNVQFPIIADPD 103
                 89999999...5699********999999*********************************************8888888888999999********* PP

                 SHHHHHTT-TTEEE.GGG......EEE-EEEEEEETTEEEEEEESSSCHTSTTSH CS
     Redoxin  95 aaftkalGlrleedaseg......lrtpryavidedgkvvylevepepeteesna 143
                   +++++++   +d s+       l +++++ id ++ ++ +   p ++   +na
  CCE29929.1 104 RVVASQYDMIDHQDPSNIdrnalpLTIRSVFFIDPKKTIRTILAYPAST--GRNA 156
                 **********99**99999*****************9999877666663..4555 PP

>> 1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   9.2e-12   5.5e-08       1      37 [.     165     201 ..     165     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 9.2e-12
                 HHHHHHHHT-BB-TTT.TBT-EEE---SSHHHHHHHH CS
  1-cysPrx_C   1 ALQladkhgvatPAnWkpGdkvivpPpateedavkry 37 
                 +LQ +dk+++atP +W+ G++viv +++ e +a++ +
  CCE29929.1 165 SLQASDKYKIATPIDWVLGQDVIVANSVKEAEAKELF 201
                 79**********************9988887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1638.97
//
Query:       CCE29930.1  [L=489]
Description: related to oxalate decarboxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-41  140.9   0.0    8.1e-23   80.7   0.0    2.2  2  Cupin_1          Cupin
    8.6e-24   83.1   0.0    1.4e-12   47.1   0.0    2.3  2  Cupin_2          Cupin domain
    8.1e-08   31.9   0.0    0.00017   21.2   0.0    2.7  2  Cupin_3          Protein of unknown function (DUF861)
    1.2e-07   31.8   0.0    0.00066   19.6   0.0    2.2  2  MannoseP_isomer  Mannose-6-phosphate isomerase
      1e-05   25.4   0.0      0.055   13.4   0.0    2.5  2  AraC_binding     AraC-like ligand binding domain
     0.0038   16.9   0.0     0.0075   15.9   0.0    1.4  1  3-HAO            3-hydroxyanthranilic acid dioxygenase
  ------ inclusion threshold ------
       0.14   11.4   0.0       0.24   10.7   0.0    1.3  1  CDO_I            Cysteine dioxygenase type I


Domain annotation for each model (and alignments):
>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   3.2e-26   8.1e-23       3     144 ..     142     276 ..     140     280 .. 0.92
   2 !   58.1   0.0   2.8e-19   7.2e-16      10     111 ..     330     426 ..     322     457 .. 0.81

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 3.2e-26
                 CGGSSEEEEETTEEEEEESTTTSTTTHSSTEEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEE CS
     Cupin_1   3 llepsptieseggrvteansenlpglntlgisaarvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqyn 101
                 l+  +p ++ ++g+ ++ n ++lp      i+ +   lep++++++h+h +a+e+a vl+G++rv  +  +   ++f+ +l+eGdv+ +P+g++h +++
  CCE29930.1 142 LSHNRPGYKGKAGWARQQNKSHLP--AAKEIAGVDMKLEPNAYRELHWH-SANEWALVLKGCARVAAINDES--QSFTDDLCEGDVWFFPSGVPHSIQA 235
                 66678889****************..88889999***************.**************66666665..9************************ PP

                 ESSSSEEEEEEEESSSTT-EEHSCEHHHHHTSSBHHHHHHHHT CS
     Cupin_1 102 sgdepavaivvfdtnnpgnqsvlaalfsvlpaLdrevlakafq 144
                    +++v++ ++ ++ +  ++ ++ +++++  ++revl k+f+
  CCE29930.1 236 F--DKGVEFLLVFDSGDFDENSTFLVSNMFARIPREVLSKNFK 276
                 *..89999999999999999999999****************7 PP

  == domain 2  score: 58.1 bits;  conditional E-value: 2.8e-19
                 EEETTEEEEEESTTTSTTTHSSTEEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEE CS
     Cupin_1  10 ieseggrvteansenlpglntlgisaarvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepav 108
                  e+ gg+v+ +++ ++p     g saa v ++pg+++++h+h+ + e+ y lqG+gr+ +          + +++ Gdv ++P+  +h++ n+g  ++v
  CCE29930.1 330 HETPGGTVKIIDPTSFP--IAAGFSAALVTVKPGAMREIHWHTTSDEWSYFLQGSGRATIYAAPS--AGQTFDFTSGDVGYIPKDSAHYIENTGTGDLV 424
                 4789*************..778888888888**************************88777775..566666********************955544 PP

                 EEE CS
     Cupin_1 109 aiv 111
                  + 
  CCE29930.1 425 -FL 426
                 .44 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0     8e-12   2.1e-08       3      69 ..     175     244 ..     173     246 .. 0.88
   2 !   47.1   0.0   5.6e-16   1.4e-12       2      70 ..     355     428 ..     354     429 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 8e-12
                 EEEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTE....EEEEETTEEEEE-TT-EEEEEE-SSS-EEEEE CS
     Cupin_2   3 velppGesapshrHpgedeffyVleGegelt.vdge....eveleaGdsvyfpagtpHrfrNtgdeparllv 69 
                 ++l+p++  + h+H+ + e+  Vl+G +++  +++e    + +l +Gd+++fp+g+pH +    d+ +++l 
  CCE29930.1 175 MKLEPNAYRELHWHSAN-EWALVLKGCARVAaINDEsqsfTDDLCEGDVWFFPSGVPHSIQA-FDKGVEFLL 244
                 889**************.****************9999999999**************9844.555666665 PP

  == domain 2  score: 47.1 bits;  conditional E-value: 5.6e-16
                 EEEEETTEEEEEECSSSEEEEEEEEESEEEEE.EC....TEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2   2 lvelppGesapshrHpgedeffyVleGegelt.vd....geeveleaGdsvyfpagtpHrfrNtgdeparllvv 70 
                 lv+++pG++ + h+H+ +de+ y l+G g+ t +     g++++ + Gd+ y+p+   H+++Ntg++++++l v
  CCE29930.1 355 LVTVKPGAMREIHWHTTSDEWSYFLQGSGRATiYAapsaGQTFDFTSGDVGYIPKDSAHYIENTGTGDLVFLEV 428
                 89******************************5559999********************************987 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0011       2.7      25      60 ..     190     229 ..     183     242 .. 0.77
   2 !   21.2   0.0   6.7e-08   0.00017       7      60 ..     351     411 ..     348     427 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
                 SEEEEEEEECEEEEEET..TTEE..EEEETTEEEEE-TTE CS
     Cupin_3  25 edEfcyileGevkvtpe..gget..velraGDlvvlpkgl 60 
                 ++E + +l+G  +v++   +++     l +GD++++p g 
  CCE29930.1 190 ANEWALVLKGCARVAAIndESQSftDDLCEGDVWFFPSGV 229
                 47999999999999886434444556799********997 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 6.7e-08
                 CEEEEEEEECEEE...EECESSEEEEEEEECEEEEEET....TTEEEEEETTEEEEE-TTE CS
     Cupin_3   7 fswgiwectpGkf...rltyeedEfcyileGevkvtpe....ggetvelraGDlvvlpkgl 60 
                 fs+ ++ ++pG     +++ + dE  y+l+G  + t       g+t+ +  GD+ ++pk++
  CCE29930.1 351 FSAALVTVKPGAMreiHWHTTSDEWSYFLQGSGRATIYaapsAGQTFDFTSGDVGYIPKDS 411
                 67777788888642227999*********9876665444477*****************98 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00024      0.62      79     127 ..     184     238 ..     170     255 .. 0.72
   2 !   19.6   0.0   2.6e-07   0.00066      62     135 ..     350     428 ..     328     436 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00024
  MannoseP_isomer  79 qkhhhraehW.vvvkGtakvtv.ddevl....llkenestyiplgaihrlenpGk 127
                      + h+h a+ W +v+kG+a+v   +de+      l e +  + p g+ h+++   k
       CCE29930.1 184 ELHWHSANEWaLVLKGCARVAAiNDESQsftdDLCEGDVWFFPSGVPHSIQAFDK 238
                      569****9995688*****974244433112246788999999999999987665 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 2.6e-07
  MannoseP_isomer  62 ryqvkritvkPgeklslqkhhhraehWvvvkGtakvtv.....ddevlllkenestyiplgaihrlenpGkipleliev 135
                       +    +tvkPg++  ++ h    e    ++G  + t+       +++ +++ +  yip+++ h +en G  +l ++ev
       CCE29930.1 350 GFSAALVTVKPGAMREIHWHTTSDEWSYFLQGSGRATIyaapsAGQTFDFTSGDVGYIPKDSAHYIENTGTGDLVFLEV 428
                      6777889**********999988887677777665554222225799***************************99998 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.1e-05     0.055      15      63 ..     182     235 ..     177     245 .. 0.88
   2 !    9.3   0.0   0.00039      0.99      19      96 ..     367     450 ..     362     471 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
                   SEEEETT-SEEEEEEEEE-EEE.EETTEE....EEE-TT-EEEE-TTS-EEEEE CS
  AraC_binding  15 sfpphvhdeyvihyvteGtgrl.rlngrt....ydlgpGdlfLlppgepHdyes 63 
                     + h+h+  ++ +v++G +r+  +n++      dl +Gd+ ++p g+pH++++
    CCE29930.1 182 YRELHWHSANEWALVLKGCARVaAINDESqsftDDLCEGDVWFFPSGVPHSIQA 235
                   4567******************999999977767999**************997 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00039
                   ETT-.SEEEEEEEEE-EEEEE.....TTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG---EEETTEE CS
  AraC_binding  19 hvhd.eyvihyvteGtgrlrl.....ngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegelleriledssilagapl 96 
                   h+h    ++ y+++G+gr ++     +g+t+d ++Gd+  +p++  H++e  +  ++ +  + + + + + + + +  l + + 
    CCE29930.1 367 HWHTtSDEWSYFLQGSGRATIyaapsAGQTFDFTSGDVGYIPKDSAHYIENTGTGDLVFLEVLLAPKFTDISVAQWLALTPKQT 450
                   566555578888888888876444447999*********************999999988888888887777777777777665 PP

>> 3-HAO  3-hydroxyanthranilic acid dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.9e-06    0.0075      42     104 ..     179     242 ..     170     265 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.9e-06
                 SB--S-EEE-SS-EEEEEEES-E.EEEEEETTCCCEEEE-TTEEEEE-TT--EEEEE-TT-EEE CS
       3-HAO  42 PnerkdyhleegeeffyqkkGdm.vlkvldegkardivireGeifllParvphsPqrfadsvGl 104
                 Pn+ ++ h + ++e+   +kG   v  + de++     + eG+++++P+ vphs q f + v +
  CCE29930.1 179 PNAYRELHWHSANEWALVLKGCArVAAINDESQSFTDDLCEGDVWFFPSGVPHSIQAFDKGVEF 242
                 9*******************96526677777777666678*****************9988865 PP

>> CDO_I  Cysteine dioxygenase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.5e-05      0.24      68     111 ..     350     393 ..     339     417 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.5e-05
                 T-EEEEEEE-TT-B--EE--TT-EEEEEEEES-EEEEEE----S CS
       CDO_I  68 ksellllcWgpGtassvHDHtdsvgalkllaGeLkEtkfAwalk 111
                 ++ + l++  pG   ++H Ht s   +  l+G  + t +A++  
  CCE29930.1 350 GFSAALVTVKPGAMREIHWHTTSDEWSYFLQGSGRATIYAAPSA 393
                 6788999*********************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3613.14
//
Query:       CCE29931.1  [L=602]
Description: related to PHO89-Na+/phosphate co-transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-99  333.2  17.9    1.8e-99  333.0  17.9    1.0  1  PHO4      Phosphate transporter family
  ------ inclusion threshold ------
       0.58   10.4   7.1        1.9    8.8   0.6    3.0  2  UPF0444   Transmembrane protein C12orf23, UPF0444


Domain annotation for each model (and alignments):
>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.0  17.9    2e-103   1.8e-99       1     336 [.      25     588 ..      25     589 .. 0.96

  Alignments for each domain:
  == domain 1  score: 333.0 bits;  conditional E-value: 2e-103
        PHO4   1 iGanDvanafatsvgskaltlrqAvilaaifeflGavllGaeVaetirkgivdvelf..dpselmlgmlaallgaavwlllatvlglPvStthslvGal 97 
                 +GanDvan++atsv+s+++++rqA++l +ife+lGa+++Ga+ aeti++gi+   +f  + s+ ml++++al++a  w++++t  +  vS+t sl+ a+
  CCE29931.1  25 NGANDVANSWATSVSSRSISYRQAMVLGTIFEMLGAITVGARTAETIKNGIIPNAAFqnNASVQMLAFTCALAAASSWVMWCTRHSAHVSSTYSLISAV 123
                 8***************************************************7777788889999********************************** PP

        PHO4  98 iGaalaaeggeavkw.....kklvkivlswvlsPllggiiaallfllvkrlilvk.eklknalralpvlvlvtiailalsilfkge............. 177
                 +G+++a+ g++ v+w     k+l+ i++++ ++P+++g +aa++f+lvk ++ ++ +++ +a+++ p+++l+  +i++lsi++kg+             
  CCE29931.1 124 AGVGVATVGASRVQWgwndgKGLGAIFAGLGMAPVISGGFAAAIFMLVKLVVHMRrNPVPWAVYTSPFFFLIAGTICTLSIVYKGSpklglskkpgwyi 222
                 ******9999*****8877769*****************************88667****************************999999999999999 PP

        PHO4 178 ................................................................................................... 177
                                                                                                                    
  CCE29931.1 223 aavtmgtggglavlsaiffvpyvyakvikkdptvrwwmfiygpalfkrpvvehadralvpnyavvqddaeedecikdpskhttsptaafqkpgneiern 321
                 999999999****************************************************************************************** PP

        PHO4 178 ................................................................................................... 177
                                                                                                                    
  CCE29931.1 322 ekslsnveatqksyqelvaegeakfharlmrkrgplgwairtlhnnpmgagqlyelhnikilakripayvvcgalygihydihaaqtgiqgtpegkrme 420
                 ***********************************************************************************************9998 PP

        PHO4 178 .....skkddeeteklfkflqvvsaalvsfahGanDvanaiGpllaalisiyk....a.sk.evplwvlllgglaialGlllgGkrviktvGekitkkl 265
                      ++k+ +e+e++++f+qv++a+++sfahGanD+ n +Gp+ a+++ ++k    a +k +v +w l++  + i++Gl+++G++++k +G+kit  +
  CCE29931.1 421 rvygaAEKYPNEVEHTYSFVQVLTACTASFAHGANDIGNSVGPW-AVIYGAWKtgnaAqAKaPVDVWQLAVLSATISVGLITYGYNIMKVMGNKITY-H 517
                 88775449************************************.999999998874245567779******************************5.* PP

        PHO4 266 tpsrGfaaelaaaltvllasklglPvStThvlvgavvGvGlakkresavnwklvrnivlaWvlTlpvsall 336
                 +psrG ++e++aa+tvl++s++ lPvSt+ +++ga+vGvGl+++  +avn++ v+ ++l+W++T+p++++l
  CCE29931.1 518 SPSRGSSMEMGAAITVLVFSQFSLPVSTSMCITGATVGVGLCNGTLKAVNFQRVGLLLLSWIMTIPIAGTL 588
                 ********************************************************************976 PP

>> UPF0444  Transmembrane protein C12orf23, UPF0444
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.9      0.01        90      26      62 ..      96     134 ..      87     141 .. 0.62
   2 ?    8.8   0.6   0.00021       1.9      26      66 ..     527     566 ..     520     572 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.01
     UPF0444  26 vGatvgGvawvGgksLeltksa..vtavpevGvglvkgs 62 
                 + a+ + v+w   +s +++ ++  + av+ vGv+ v +s
  CCE29931.1  96 LAAASSWVMWCTRHSAHVSSTYslISAVAGVGVATVGAS 134
                 556666677777777766665521445666666655443 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00021
     UPF0444  26 vGatvgGvawvGgksLeltksavtavpevGvglvkgsvsav 66 
                 +Ga++  v+     sL +++s+ ++ ++vGvgl  g+++av
  CCE29931.1 527 MGAAIT-VLVFSQFSLPVSTSMCITGATVGVGLCNGTLKAV 566
                 689998.9999999**********************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4275.56
//
Query:       CCE29932.1  [L=200]
Description: uncharacterized protein CPUR_03779 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0017   18.5   0.8      0.006   16.8   0.0    2.1  2  Myb_DNA-binding  Myb-like DNA-binding domain
      0.003   17.8   1.2     0.0063   16.7   0.5    2.0  2  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.7e-07     0.006       2      41 ..      86     125 ..      85     129 .. 0.91
   2 ?   -0.3   0.2      0.14   1.3e+03      19      26 ..     165     172 ..     135     180 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.7e-07
                      SSSBHHHHHHHHHHHHHHTTCHHHHHH.HHTSS-HHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhGnrWkkIae.rlggRtekqcrsr 41 
                      g+W   +d++L+ a  + G +W+ I + +++++++++cr r
       CCE29932.1  86 GAWKVPDDNRLIMARME-GLNWNQIKDaYFPSKSANACRKR 125
                      7899999*******999.*******6669**********98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.14
                      HTTCHHHH CS
  Myb_DNA-binding  19 hGnrWkkI 26 
                       G+rW+ +
       CCE29932.1 165 TGERWNVV 172
                      45556655 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.5   7.1e-07    0.0063      14      53 ..      99     139 ..      88     153 .. 0.74
   2 ?   -0.7   0.1      0.19   1.7e+03       8      22 ..     142     160 ..     136     183 .. 0.52

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.1e-07
  Myb_DNA-bind_6  14 eky.gndWknIaeal.nrRtpkqcfdrwknkLrpkisrkkws 53 
                      ++ g +W++I +a+ + +++++c+ r+++ + ++ s++ w 
      CCE29932.1  99 ARMeGLNWNQIKDAYfPSKSANACRKRHER-VVQRKSTEDWD 139
                     344156******997689************.55555666665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.19
  Myb_DNA-bind_6   8 iLlklvekygn....dWkn 22 
                     +L+ l ++y +     W+ 
      CCE29932.1 142 KLQLLAKEYMRmrkqIWSG 160
                     4444444443311112433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1544.27
//
Query:       CCE29933.1  [L=536]
Description: related to protoheme IX farnesyltransferase,mitochondrial precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-58  196.4  18.2    4.9e-58  196.4  18.2    1.5  1  UbiA      UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.4  18.2   2.8e-62   4.9e-58      10     251 ..     210     466 ..     202     467 .. 0.94

  Alignments for each domain:
  == domain 1  score: 196.4 bits;  conditional E-value: 2.8e-62
        UbiA  10 alaaggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltallgllallly.vvYt 107
                 ++++++s+++l+ll+l+ gt+l++a+analN++++  +Da+m+rt+nRPlv+ ++sp+ a +fai+ ++ g++ l +++np++ +lgl +++ly  +Yt
  CCE29933.1 210 TMTETPSLSPLTLLFLTTGTALCSASANALNMLYEPSTDAKMSRTRNRPLVRKLLSPRVAALFAILAGATGVGALFFGVNPTVSFLGLSNIVLYaGIYT 308
                 567889999****************************************************************************************** PP

        UbiA 108 glrlKrrtllgtvvggiafglppllgwaavtgsl.....................sllalllalavflltwaialandlrdregDrkagiktlpvvlGr 185
                   +lK +t+++t+vg++++g+ppl+gwaa++g++                     ++la ll++++f++++++ ++     r+++++ag+++l+ +  +
  CCE29933.1 309 --PLKAVTAFNTWVGAVVGGIPPLMGWAAAAGETatkdgswrellfandgsslggWILAGLLFAWQFPHFMPLSWT----IRDEYKAAGLRMLAWTNPA 401
                 ..***************************999999****************8888888888888888888888888....77778************99 PP

        UbiA 186 kaaril.lalllavlllallllllalllllylllalllaalallraarlvrrrdakkaakfflflss 251
                 ++ar+   +++++++l++   l++a+++ + +++++l ++l+l+r+a  ++++++++++++ lf++s
  CCE29933.1 402 RNARVAlRYSIVFLPLCI--SLCAAGVTEWSFAATSLPINLWLVRQAVAFWKHQGHAGSARGLFWAS 466
                 999998878888888888..9*******************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3833.99
//
Query:       CCE29934.1  [L=1230]
Description: probable MSH6-DNA mismatch repair protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-67  226.8   0.3    4.2e-67  225.8   0.3    1.5  1  MutS_V    MutS domain V
    1.5e-41  142.7   0.6    3.6e-41  141.5   0.6    1.7  1  MutS_III  MutS domain III
    4.2e-33  114.0   0.1    9.3e-33  112.8   0.1    1.6  1  MutS_I    MutS domain I
    3.9e-15   56.3   0.0    3.3e-14   53.3   0.0    2.5  1  MutS_II   MutS domain II
    2.1e-14   53.6   0.2    5.1e-14   52.4   0.2    1.7  1  MutS_IV   MutS family domain IV
     0.0039   17.7   0.8      0.016   15.7   0.0    2.2  2  AAA_23    AAA domain
  ------ inclusion threshold ------
      0.038   13.7   0.0      0.081   12.7   0.0    1.5  1  AAA_29    P-loop containing region of AAA domain
       0.17   11.5   0.0       0.36   10.4   0.0    1.5  1  AAA_27    AAA domain
       0.18   11.6   7.1       0.11   12.3   0.2    2.5  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.8   0.3   2.1e-70   4.2e-67       2     185 ..     991    1176 ..     990    1179 .. 0.96

  Alignments for each domain:
  == domain 1  score: 225.8 bits;  conditional E-value: 2.1e-70
                  EEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHH CS
      MutS_V    2 litGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlai 98  
                  l+tG+n aGkst lr ++++v++aqiG++vpa +a++++vd+i++R+ga+D++  ++stF vE++Et++il++at +slvilDElGRGts+ydG+a+
  CCE29934.1  991 LLTGANAAGKSTILRMTCVAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAV 1087
                  79*********************************************************************************************** PP

                  HHHHHHHHHHTT--EEEEEES-GGGGGHHHHSTTEEEEEEEEE..EETTEEEEEEEEEES--SS--HHHHHHHTT--HHHHHHHHHHHH CS
      MutS_V   99 alavaeyllekikaktlfatHyheltklaekleevknlhlavk..eeeedivflykvkegaaeksyGikvaklaglPesvverArevlk 185 
                  a+av+++++++i +  +fatHyh+l++  e+++e+++ ++a++  e+e++++flyk+++g+ae s+G++ a++ g+ ++v++rA+++++
  CCE29934.1 1088 AQAVLHHVATHIGCVGFFATHYHSLATEFENHPEIQEKRMAIHvdEKERKVTFLYKLEDGVAEGSFGMHCAAMCGISSRVIDRAETAAR 1176
                  ***********************************9766655433999************************************98875 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.5   0.6   1.8e-44   3.6e-41       1     191 []     639     929 ..     639     929 .. 0.77

  Alignments for each domain:
  == domain 1  score: 141.5 bits;  conditional E-value: 1.8e-44
                 HHHHHTTSSS-TTS.SSSS-HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHH.T..TT.HHHHHHHHTT---HHHHHHHHHTT---HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III   1 aTlrnLeilenlrggskegsLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVee.leneelreelrellrrlpDleRllsrislgkakardlk 98 
                 +Tl+nLe+++n+++gs+eg L+++l+++ T++G+Rl+r+w+ +Pl++ e+In+RldaV+    + +lre++ ++l+++pDleRl+sri++g +k++d+ 
  CCE29934.1 639 QTLTNLELFTNSTTGSTEGALFSLLNKCITPFGKRLFRQWVAHPLCHMERINERLDAVDLlNGDMTLREQFSSQLMKMPDLERLISRIHAGACKPEDFV 737
                 7*******999777899******************************************9555999*******************************99 PP

                 HHHHHHHHHHTTTTT---SSTHHHHH......................................HHHHHHHHHHB-SS--SSGGGS--B-T........ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx......................................xxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
    MutS_III  99 allealkaleelvallekeklaesee......................................eslaelleeaideeplalekegedlra........ 151
                 ++le ++++++++ ll++ k     +                                      +                                  
  CCE29934.1 738 RVLEGFEQIQHTASLLSAFKGG---NglvdrlissmpdlteplsywksafdrrrarekkilipeR-------------------------Giepdfdds 808
                 9899999887777776444332...2344555544444444444444444444444444444440.........................044444444 PP

                 .................................................................................HHHHHHHHHHHHHHHHHH CS
                 .................................................................................xxxxxxxxxxxxxxxxxx RF
    MutS_III 152 .................................................................................iealeqelfqelleevee 169
                                                                                                    +l +e+ ++l+++++ 
  CCE29934.1 809 lsrideiksqlkellsekmaelkcrslkftdvgkeiyqmetpkstkvpsnwrqmsatkdvkrwyfpeltqlvrelqeaeelHSQLVREIASRLFRKFDV 907
                 44444444444455555555555666666677777999999********************************99776665444448899999999966 PP

                 THHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 170 alerlrrlaealaeLDvllSlA 191
                   ++++ +++++a+LD+l+SlA
  CCE29934.1 908 DYATWLLAIKIIAQLDCLVSLA 929
                 57*******************9 PP

>> MutS_I  MutS domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.1   4.7e-36   9.3e-33       1     112 [.     340     459 ..     340     460 .. 0.95

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 4.7e-36
                 HHHHHHHHCCCHH-TTCEEEEEETTEEEEECHHHHHHHHHCSSSSTT.ESSSSC.EEEEEEEHHHHHHHHHHHHHTT-EEEEEEE-S-HHHH....... CS
      MutS_I   1 tplmkqylelkkkykdavlffrvGdfYelfgeDAviaareleitltkrkkssekeipmagvPehalekylrkLvekgykVavveqtetpaek....... 92 
                 tp++kqy+e+k++  d+++ff++G+fYel+++DA+i+++e++ ++t    ++ + ++m+gvPe++l+++++++++k+ykVa+v+q+et+  k       
  CCE29934.1 340 TPFEKQYWEIKQNLWDTIVFFKKGKFYELYENDATIGHQEFDFKMT----DRVN-MRMVGVPESSLDHWVNQFIAKQYKVARVDQMETNLGKemrerqd 433
                 8*********************************************....6677.*********************************999999***** PP

                 ......S.S--EEEEEEEBTTC-TTS CS
      MutS_I  93 ......kgvvkrevvrviTpGtltde 112
                       +++++r+++ v+T Gtl+d 
  CCE29934.1 434 ksgkkaDKIISRQLSCVLTAGTLVDG 459
                 99987746***************985 PP

>> MutS_II  MutS domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   1.7e-17   3.3e-14       2     133 ..     469     616 ..     468     619 .. 0.78

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.7e-17
                 EEEEEEEE..TTTSEEEEEEEETTTTEEEEEEEEE...-HHHHHHHHHH-ESEEEEESS-SCCCH.....HHHHHCHCTTT-EEEEESCCCCSHCCHHH CS
     MutS_II   2 ylaAisek..regrrvGlafiDlstgefvvsefed...feeleaeLsrlsPkElllpedlsesta.....eeessklrelrsrvgvretvefesekase 90 
                 y++Ai+e+   + +++Glaf+D++tg+f++s fed   ++++e+ +++++P+Elll+++ ++ +a     +    +  +++  ++  ++++++ ++++e
  CCE29934.1 469 YCVAIKESviDDVPSFGLAFVDTATGRFQLSGFEDdvdCTKFETFVAQIGPRELLLEKSHLSTKAlrilkN--NTSPTTIWTHLKPGAEFWDADDSRRE 565
                 889999999888888********************************************999988875332..33334455566666666666666665 PP

                 HCH.HHB--STTTTTTT.......GGG-HHHHHHHHHHHHHCCCCCSCCCC CS
     MutS_II  91 rle.edfsvedldgfgl.......ekekklalaAlgalisYleetqkekel 133
                   +  +f+    ++ g         +  +l+++A gal+sYl+ +q e++l
  CCE29934.1 566 LKCgNYFAASPDSDDGAwpevlqqFQDDDLVMSAMGALLSYLKFLQIERPL 616
                 555355544444444557888877678999****************99765 PP

>> MutS_IV  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.2   2.5e-17   5.1e-14       1      91 [.     800     888 ..     800     889 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 2.5e-17
                 TTSHHHHHHHHHHHHHHHHHHHHHCCCCCCCT-TTBEECCCSSSEEEEEE-TCCCTTT--SEEEEEECTCEEEEECCCHHHHHHHHHHHHH CS
     MutS_IV   1 gfdeeLdelrdrleelekeleeleekereklgikslkveynkvlGyylevtrseakkvpkefirlqtlknseryttaelkkleaelleaee 91 
                 g+++++d + +r++e++++l+el+++  ++l+++slk+ + ++  y++e ++s   kvp+++++++ +k+ +r + +el++l +el+eaee
  CCE29934.1 800 GIEPDFDDSLSRIDEIKSQLKELLSEKMAELKCRSLKFTDVGKEIYQMETPKST--KVPSNWRQMSATKDVKRWYFPELTQLVRELQEAEE 888
                 6899***********************************************877..*********************************97 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2       1.4   2.7e+03     185     198 ..     812     825 ..     770     900 .. 0.58
   2 !   15.7   0.0   7.9e-06     0.016      19      41 ..     987    1009 ..     974    1012 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.4
      AAA_23 185 leeleeeleeilke 198
                 ++e++++l+e+l+e
  CCE29934.1 812 IDEIKSQLKELLSE 825
                 23333333332222 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 7.9e-06
      AAA_23   19 kgltlItGpNGaGKTTildAikl 41  
                   +++l+tG N aGK+Til+  + 
  CCE29934.1  987 AKINLLTGANAAGKSTILRMTCV 1009
                  589***************87665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.1e-05     0.081      22      39 ..     987    1004 ..     978    1015 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.1e-05
      AAA_29   22 kgatlltGpsGsGKSTll 39  
                  + + lltG++ +GKST+l
  CCE29934.1  987 AKINLLTGANAAGKSTIL 1004
                  4578*************8 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00018      0.36      18      44 ..     979    1005 ..     974    1009 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
      AAA_27   18 sldfsaeeadlhliyGpNEAGKstalr 44  
                   ++++ ++a++ l+ G+N AGKst+lr
  CCE29934.1  979 DVRLGGDRAKINLLTGANAAGKSTILR 1005
                  67888999*****************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   2.2      0.11   2.3e+02      65     244 ..     195     380 ..     159     385 .. 0.75
   2 ?   12.3   0.2   5.5e-05      0.11       1      17 [.     989    1005 ..     989    1006 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.11
      AAA_21  65 flsqgvryryglrlersqv.eeklssvetllesgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglr 162
                 ++++++++  + +  ++   +  +  ++   +++  + + s+++ed+++ ++++++++v  ++  +++ s+++ +  +++   +  +a +++  + +  
  CCE29934.1 195 LVDDMSDFLASEDSADDLRqRNNKRKRPAAPKTPRKRSNVSPPSEDEDSIVPDRNDDLVMAEVPSNSTASQWSYDPESADKRPVMVPAGRAAVKDPKHK 293
                 555555555555555555543333333333344444444467788899999999999999999999999999999999999999999999999998888 PP

      AAA_21 163 kerigllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrer..........gvvflengdgqelparelSdGtkrl 244
                   ++++   + d +++  ++r  +++++s  + +++  ++   +++ ++ + +              ++vf+++g+ +el  +++  G++++
  CCE29934.1 294 --EKAYTKEPEDRYPWLANIRDKEKRLPSDPEYDPRTIFI---PPKAWDKFTPFEKQyweikqnlwdTIVFFKKGKFYELYENDATIGHQEF 380
                 ..9******************************9999888...46667666666666999*********************99999999987 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.5e-05
      AAA_21    1 lnvliGpNgsGKSnLLd 17  
                  +n+l+G+N++GKS++L+
  CCE29934.1  989 INLLTGANAAGKSTILR 1005
                  79*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.43
# Mc/sec: 8641.87
//
Query:       CCE29935.1  [L=552]
Description: related to diphthamide synthesis protein DPH2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-85  287.1   0.0    2.2e-85  286.8   0.0    1.1  1  Diphthamide_syn  Putative diphthamide synthesis protein


Domain annotation for each model (and alignments):
>> Diphthamide_syn  Putative diphthamide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.8   0.0   1.2e-89   2.2e-85       1     303 []      62     380 ..      62     380 .. 0.90

  Alignments for each domain:
  == domain 1  score: 286.8 bits;  conditional E-value: 1.2e-89
  Diphthamide_syn   1 fPegllpdsaeiadileefgae.......vvilgDttYGaCcvdevaaehlgadllvHyGhsclspvdrlpvlYvfveieldvehlvetlkknf 87 
                      fP+ +l+d++++++ le+  +e       ++il+Dt+Y+aCcvde+a eh+++d++vHyG++clsp++rlpv+Yv++++el++ +++e+++++f
       CCE29935.1  62 FPDAMLVDAPRVVQTLEAQLCEdgdesrrIHILADTSYSACCVDEIATEHADSDVVVHYGRTCLSPTSRLPVIYVYTSHELNHGAVIERFAAEF 155
                      9***************6653333445667***************************************************************** PP

  Diphthamide_syn  88 .kekkkivlvstiqyahaleevkeeleeegyevvkvpqsekplspgevlgctspklkeeeeevd..ailyigdgrfhllslmlsn.pklpvyry 177
                       ++  k+v++++++y+++++++ + l+++gy +v ++++ + +++  + +++++  + +++e++  ++l+i+d+++ ll ++ ++  +l+v+  
       CCE29935.1 156 vDKYVKVVVMADLTYQDHVDSIVHDLKAAGYANV-KGTTVERNPAAIIPNRKIQGPDMTDDEIKshSLLHISDPPTGLLLALQTRfASLHVLCT 248
                      888999*********************99**999.777756666666667755555555555553377****************9899999977 PP

  Diphthamide_syn 178 dpys..kklteesydakkllrrRyaaiekakdakkvGiivgtlgvqgrlelverlkkllkeagkksylvlvgelnpakLanfaeidafVlvaCp 269
                        +s   ++++ + +a+ llrrR+a++ +++ a +vGi+v+tl+v+++l+ ++ l++++++agkksy+v+vg+lnpakLanfaei+++V+v+C+
       CCE29935.1 249 TNSSaaPTIDNPTIRAAGLLRRRFARVLSLAAAGVVGILVNTLSVSNYLASIDLLRNKMARAGKKSYTVVVGKLNPAKLANFAEIEGWVVVGCW 342
                      7777345999************************************************************************************ PP

  Diphthamide_syn 270 rlsid.dgkeFekPvltpyElevalg...erewteeyv 303
                      ++ ++ d   +++Pv+tp+E+eval    er w++e++
       CCE29935.1 343 ESGLVeDDAGYWRPVVTPFEMEVALVreeERLWGNEWW 380
                      *****88899***************9888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3898.41
//
Query:       CCE29936.1  [L=209]
Description: uncharacterized protein CPUR_03783 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.61   10.1  16.6       0.95    9.5  16.6    1.3  1  MARVEL     Membrane-associating domain
        1.2    9.4   8.5        0.9    9.8   6.0    1.8  2  DUF4293    Domain of unknown function (DUF4293)


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  16.6   0.00011      0.95       7     143 ..       8     150 ..       4     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00011
      MARVEL   7 gilrilqlvfaiiilgliasliakldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrdis 105
                 +++ri q+v  i  lg+ a +i+    ++  +++ ++ ++ + ++ +++a+++ +++lf+  + +s     ++ ++d+ ++  +l+a++    g+ d +
  CCE29936.1   8 VFFRICQIVTLIPPLGMLAWFIH----IFVINNALTPDSILILFIVVVLAIAWTIATLFS--YHRSSTNAQFVALIDLAFMG-TLIAAVYQLRGIADAD 99 
                 689*******************3....444445555555555555555555555555553..77888888888888876655.7889999999999989 PP

      MARVEL 106 ca..................fesnqysasltvrcgqaqaavafgflavllfaasav 143
                 c                   f    ++ ++++ cg ++a  af+ +++++fa++a+
  CCE29936.1 100 CVnptastvwyapnhvpvpdF----GW-QTDKPCGMLKACWAFAIMNIVFFAFTAL 150
                 989999999999855555442....34.56779*******************9985 PP

>> DUF4293  Domain of unknown function (DUF4293)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.0    0.0001       0.9      13     101 ..       4      90 ..       1     116 [. 0.74
   2 ?   -0.4   0.0      0.13   1.2e+03      84     107 ..     133     156 ..     128     170 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0001
     DUF4293  13 ailmaaflflplasivtedel.lsfyalgvstaeaetsvnvsvwvlvilllliailaliaIflyknRklQlrlclinllllvllyvllal 101
                 a++ ++f ++++++++++ ++ + f ++ v    ++  +  s+++l+i+ +l++  +++++f y++ ++ ++++++  l ++++++++++
  CCE29936.1   4 ALVFVFFRICQIVTLIPPLGMlAWFIHIFVI---NNALTPDSILILFIVVVLAIAWTIATLFSYHRSSTNAQFVALIDLAFMGTLIAAVY 90 
                 4444555578888888888884445555555...6666799********************************97666666666666666 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.13
     DUF4293  84 lclinllllvllyvllallllvnk 107
                  c+  +++++++++++al ++ + 
  CCE29936.1 133 ACWAFAIMNIVFFAFTALAAYSHG 156
                 566666666666666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1297  (0.0723409); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1636.90
//
Query:       CCE29937.1  [L=174]
Description: uncharacterized protein CPUR_03784 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-15   57.2  25.3    2.4e-15   56.8  25.3    1.2  1  MARVEL    Membrane-associating domain


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8  25.3   1.3e-19   2.4e-15       7     144 .]       9     139 ..       5     161 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 1.3e-19
      MARVEL   7 gilrilqlvfaiiilgliaslia....kldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlvafialaagl 101
                 ++l ++  +f ii lgl a++++      + +  +++s++nf++f  +++fl+ ++llv+     +++      ++  ++ a+++++w++++ialaa l
  CCE29937.1   9 LALYGAIALFNIISLGLLAYAVNswgsS-FFYRSWSPSSVNFMLFNTIWTFLVLIYLLVI----PRFAAALYLSIVAAGLLAITTIFWFAGSIALAAFL 102
                 56778889******************62.4466899************************....446677778888999999***************** PP

      MARVEL 102 rdiscafesnqysasltvrcgqaqaavafgflavllfaasavl 144
                 +  +ca++        ++++++aqaa+afgf+ +++f++ +v+
  CCE29937.1 103 GVGNCAGS------GFCSVYRAAQAATAFGFFIWIMFTVLLVF 139
                 **999844......6799*********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1205.65
//
Query:       CCE29938.1  [L=311]
Description: related to nitrogen metabolic regulation protein nmr [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-59  200.3   0.3    3.9e-59  200.0   0.3    1.1  1  NmrA            NmrA-like family
    2.7e-18   66.5   0.4    4.1e-18   65.9   0.4    1.3  1  NAD_binding_10  NAD(P)H-binding
     0.0025   16.9   0.1     0.0036   16.4   0.1    1.2  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
  ------ inclusion threshold ------
       0.12   11.8   0.2        0.2   11.1   0.2    1.4  1  Epimerase       NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.0   0.3   8.7e-63   3.9e-59       2     232 ..       6     247 ..       5     248 .. 0.94

  Alignments for each domain:
  == domain 1  score: 200.0 bits;  conditional E-value: 8.7e-63
                 EESSTTSHHHHHHHHHHHH.....HT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG.....S-HHHHHHHHHHHHH CS
        NmrA   2 lviGaTGrqGksvvrallk.....aghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy.....skeiedgkklvdAak 90 
                 +v+GaTG qG+sv+ra+l+     +++++r ++Rd+++ +a++l+++Gv++vk+d+ + +  + a+++++++f+vt+f+      +ei++gk++ dAak
  CCE29938.1   6 TVFGATGIQGGSVIRAILAdkalsREFTIRGITRDVNKPAAQALAAKGVQVVKADMSSSQEAHPAVQNAHTIFLVTNFWesmssATEIAQGKAVTDAAK 104
                 8***************999899999*********************************************************9999************* PP

                 HHS-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE.....-HHH CS
        NmrA  91 eaGvkhfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavll.....daee 184
                 +aGvkh+i+Ssl   +d+sn++  +v+hfdsKaeie y+ra+g+p+tfv +g++m  + +++ q  + + + +   +++ +p+ +ka        dae+
  CCE29938.1 105 AAGVKHIIFSSLLHVSDASNGRLSHVTHFDSKAEIETYIRASGVPSTFVQPGLYMTGLFGFIRQ--NPEGKDK--GLVWAMPEGVKAQEAkmpllDAER 199
                 ************************************************************9999..4444444..58888888776543333578**** PP

                 HHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS-EEEE CS
        NmrA 185 DiGafvikilkdprklkgkriklagntlsgneivelfekkigktvkYt 232
                 D+G fv +++ +  +++g+ri  a++++++  i++ +e+++gk+v+Y+
  CCE29938.1 200 DTGLFVRAAVRHFPETEGRRILAATEYYTPARIMAELEEVTGKKVSYM 247
                 ************99*********************************8 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.4   9.1e-22   4.1e-18       1     146 [.       9     158 ..       9     173 .. 0.86

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 9.1e-22
                     TTTSHHHHHHHHHHHHC-....T-EEEEEETTHHHC..HHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHH.....HHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg....ghevtalvRnpekl..aeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeeg.....aknivda 84 
                     GAtG  G  +++ +la++    +++++ ++R+ +k   ++l a++g++vv++d++++++   a+++a +++  ++  ++ + +      k++ da
      CCE29938.1   9 GATGIQGGSVIRAILADKalsrEFTIRGITRDVNKPaaQAL-AAKGVQVVKADMSSSQEAHPAVQNAHTIFLVTNFWESMSSAteiaqGKAVTDA 102
                     99999999999999999888889********9554311445.58******************************665553333334569****** PP

                     HHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CE CS
  NAD_binding_10  85 akeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggL 146
                     ak+agvk++++ s ++v d ++g+++ +      + ++ k++ e ++rasg+  T+v+pg  
      CCE29938.1 103 AKAAGVKHIIFSSLLHVSDASNGRLSHV------THFDSKAEIETYIRASGVPSTFVQPGLY 158
                     *******************999988876......35799********************976 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1     8e-07    0.0036       2     119 ..       7     119 ..       6     140 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8e-07
   3Beta_HSD   2 vtGgaGFlGralvkeLvrlee.lk..evrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTr 97 
                 v G++G  G +++++++  +   +  ++r +  + +++  + l   +v+ v+++D+ + ++ + a+++++ ++ +    ++++  t        +   +
  CCE29938.1   7 VFGATGIQGGSVIRAILADKAlSRefTIRGITRDVNKPAAQALAAKGVQ-VVKADMSSSQEAHPAVQNAHTIFLVTNFWESMSSAT-------EIAQGK 97 
                 89***************99885442257777666666666666666666.***********************9988888777332.......234458 PP

   3Beta_HSD  98 nvleacvkagvrvlvYtSsaev 119
                  v +a++ agv+ +++ S + v
  CCE29938.1  98 AVTDAAKAAGVKHIIFSSLLHV 119
                 9***************997776 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   4.4e-05       0.2       2     114 ..       6     115 ..       5     144 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.4e-05
                 EEETTTSHHHHHHHHHHHHCT.....SEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTH CS
   Epimerase   2 lVtGatGfiGsalvkallekg.....yevigldrlssasntarledl..elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlq 93 
                  V GatG  G  +++a+l+ +      ++ g++r+ ++ + ++l+ +  ++v++d+  +++ + +++  ++++++++    +  +s++++++     ++
  CCE29938.1   6 TVFGATGIQGGSVIRAILADKalsreFTIRGITRDVNKPAAQALAAKgvQVVKADMSSSQEAHPAVQ--NAHTIFLV---TNFWESMSSATE-----IA 94 
                 599******9999999988888887788*******99999999998899*************99999..77888877...444555555544.....44 PP

                 HHHHHHHHHHHHTCTEEEEEE CS
   Epimerase  94 gtlnlleaarkagvkrllfls 114
                     + +aa++agvk ++f s
  CCE29938.1  95 QGKAVTDAAKAAGVKHIIFSS 115
                 477788888888887666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2292.02
//
Query:       CCE29939.1  [L=888]
Description: related to APE2 Aminopeptidase yscII [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-87  294.4   0.0    6.5e-87  292.0   0.0    2.1  3  ERAP1_C         ERAP1-like C-terminal domain
    7.3e-85  284.0   0.9    1.1e-84  283.3   0.9    1.3  1  Peptidase_M1    Peptidase family M1 domain
    1.9e-50  171.6   0.1    3.4e-50  170.8   0.1    1.4  1  Peptidase_M1_N  Peptidase M1 N-terminal domain


Domain annotation for each model (and alignments):
>> ERAP1_C  ERAP1-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.21   1.3e+03       4      17 ..     125     139 ..     124     156 .. 0.81
   2 ?   -2.2   0.0       0.4   2.4e+03     193     221 ..     150     178 ..     137     193 .. 0.75
   3 !  292.0   0.0   1.1e-90   6.5e-87       1     313 [.     547     863 ..     547     865 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.21
                 ESGGG-SSSEEEE.- CS
     ERAP1_C   4 lNdddtGyyrVnY.d 17 
                 lNd + G+yr  Y  
  CCE29939.1 125 LNDKMAGFYRSTYkR 139
                 8*********99943 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.4
                 SSHHHHHHHHHHHCC-S-HHHHHH.HHHHC CS
     ERAP1_C 193 sapsekeaalralaatpdpeller.llnfv 221
                 ++  e + + ra  ++ +p+l+++ +  ++
  CCE29939.1 150 TQ-MEATDCRRAFPCFDEPALKAKfTVTLI 178
                 33.789999**************9444444 PP

  == domain 3  score: 292.0 bits;  conditional E-value: 1.1e-90
                 -EEESGGG-SSSEEEE-HHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHGGG.GGGG--SHHHHHHHHHHHHHHHHHHT.TST.THH CS
     ERAP1_C   1 lvllNdddtGyyrVnYdeeslaalleqllskklspldRaglisdafalaragelsaadlldlllgylanEtdylvwsqalsqlatlkslls.adp.lya 97 
                 +++lN+++tG +rV+Y +++l++l++++++++ls++dRag+i+da ala +g+++++ +l+ll+g+  +E++++vw+++ ++l+ ++s +  +d+ + +
  CCE29939.1 547 FYKLNANHTGIFRVSYTPSRLEKLGQAAKDGLLSVEDRAGMIADAGALATSGYQKTSGVLNLLKGF-DSENEFVVWNEIVARLGAIQSAWVfEDKaITE 644
                 79************************999*************************************.7********************998755569** PP

                 HHHHHHHHHHHHHHHHHHHT...TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHCSTT.-S-HHHHHHHHHHHHHHS-HHHHHHHHHHHHC-S CS
     ERAP1_C  98 alkaflrklleplaeklgwe..pgeshldaqlrslllsaacaagdpevveearklfkawlegdd.lippdlrwavycalaanggeaewdallerykdts 193
                 +lkaf r+l++p a+k+gwe  +++ h ++q+++ll+  a+ +gd++ + ++r++f+++++gd+ +i+p++r++v+++++++g+ +e+d++l+ y  ++
  CCE29939.1 645 GLKAFQRHLVSPKAHKMGWEfsENDGHIEQQFKALLFEVAGISGDEKIIGACRDMFAKFMSGDKaAIHPNIRKSVFAIVLQYGDVKEYDQILNFYYAST 743
                 *******************653669*************************************9955****************************95555 PP

                 SHHHHHHHHHHHCC-S-HHHHHHHHHHCTTT..S-GGGHHHHHHHH.HSTTHHHHHHHHHHHCHCCHHHHTS.STSCHHHHHHHHHTT--SHHHHHHHH CS
     ERAP1_C 194 apsekeaalralaatpdpellerllnfvlesdevrnqdlrallaglannpegrellwefvkenwdalakrws.ggeildrivkgllpgftseeelaeie 291
                  ++e++++lr+l+  ++pel++++l +++ s+ v++qd+++++ gl+++peg ++l ++++ nw+ l+++++ g ++l+++v+++++gfts+e+l++++
  CCE29939.1 744 GSDERNTCLRSLGRAKNPELIKKTLGLLF-SPGVKDQDIYMPVVGLRSHPEGIKALYNWMEANWAILYEKLPpGLSMLGSMVNIMTSGFTSQEQLDRVD 841
                 45**************************9.99**************999**********************8345599********************* PP

                 HHHCHTT--GGGHHHHHHHHHH CS
     ERAP1_C 292 affadkdtpglrrtlkqaletv 313
                 +ff+ k+t g++++l+q++++v
  CCE29939.1 842 KFFEGKNTNGYDQSLAQSRDAV 863
                 ********************87 PP

>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.3   0.9   1.9e-88   1.1e-84       1     218 []     256     473 ..     256     473 .. 0.99

  Alignments for each domain:
  == domain 1  score: 283.3 bits;  conditional E-value: 1.9e-88
                   HHHHHHHHHHHHHHHHHTS--SSSEEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHH CS
  Peptidase_M1   1 yalevtkkllefleeyfkvpYplpkldlvalpdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEG 97 
                   ++l+ ++k+lef+e+ f++++plpk+d+va+pdf++gAMEnwgl+tyr   ll+d+++s +++k++vaev+ HElaHqWfGnlVtm+wW+ lwLnEG
    CCE29939.1 256 FSLNLAVKTLEFYEKVFGIEFPLPKMDQVAIPDFAQGAMENWGLVTYRVVDLLLDEKSSGAATKERVAEVVQHELAHQWFGNLVTMDWWEGLWLNEG 352
                   789********************************************************************************************** PP

                   HHHHHHHHHHHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSSGG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHCTTEEE CS
  Peptidase_M1  98 fatyleylildklepewevseqllleeveealsedaldeshpitqevekpseidevFdsiaYeKGasllrmlekllgeevFqkglksYlkefkykna 194
                   fat+ ++++++ ++pew+v+++++++++++als d+l++shpi++ v++++ei+++Fd+i+Y+KG+++lrm+++++ge+vF +g+++Ylk+++++n+
    CCE29939.1 353 FATWTSWYSANIFYPEWKVWQNYVTDNLQSALSLDSLRSSHPIEVPVKRADEINQIFDAISYSKGSCVLRMVSTYIGEDVFLEGVRQYLKKHAFGNT 449
                   ************************************************************************************************* PP

                   -HHHHHHHHHHCCCSCHHTHHHHH CS
  Peptidase_M1 195 etedlwdaleealnkdisevmdtw 218
                   +t dlw +l+ +++k i+e+m+ w
    CCE29939.1 450 QTGDLWASLSSVSGKPIEEIMRAW 473
                   **********************99 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   0.1   5.6e-54   3.4e-50       2     186 .]      32     221 ..      31     221 .. 0.92

  Alignments for each domain:
  == domain 1  score: 170.8 bits;  conditional E-value: 5.6e-54
                     EEEEEEEEEEETTTTEEEEEEEEEEEESS-ECEEEEEESSEEEECEEEEECTTCTCEEEEEEEECTTTTCEEEEECCEEETTCEEEEEEEEEEE- CS
  Peptidase_M1_N   2 pehYdldlkidlkektfkGsvtitlqlkeatseivldakdlkiksvslsaevksesvkidfkieqkdeelltiklkeslqqtskytLeieyegel 96 
                     p+hY ++l++dl++ tf+G+v i+l++++++s+++l++ +l+i+s ++sa+ ++ s++ + + +++ +++  ++++ sl + s+++Lei+++g+l
      CCE29939.1  32 PRHYHVTLEPDLNKLTFDGTVVIDLDVVQDSSSVSLHTLELDIHSSKISANGQTVSSNPKVS-YDEPTQVSKFEFDGSLAKGSSAQLEIKFTGQL 125
                     99*****************************************8888887777777666655.5566667999********************** PP

                     BSSSSEEEEEEEEE.TSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTSEEEESSECCCEEEET.....TCEEEEEEEEEESBEGG CS
  Peptidase_M1_N  97 ndklaGlykstYtd.kgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkeetalSnmpeeesekle.....ngqkiteFeqtpkmstY 185
                     ndk+aG+y+stY+  +g +  +++Tq+eatd R+afPCfDeP+ KA+ft++++a+k+ t lSnm++ ++ + +     + +k ++F+++p mstY
      CCE29939.1 126 NDKMAGFYRSTYKRdDGSEGILATTQMEATDCRRAFPCFDEPALKAKFTVTLIADKNLTCLSNMDVAKEIEVQsavsgSTRKAVHFNTSPLMSTY 220
                     *************989999*********************************************998877777677556667************* PP

                     G CS
  Peptidase_M1_N 186 L 186
                     L
      CCE29939.1 221 L 221
                     9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 6480.40
//
Query:       CCE29940.1  [L=536]
Description: uncharacterized protein CPUR_03787 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00017   21.6   8.6    0.00031   20.8   8.6    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.018   14.1   0.0      0.039   13.0   0.0    1.5  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   8.6   3.4e-08   0.00031       3      36 ..      15      47 ..      14      51 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.4e-08
                -HHHHHCT---STSSSS-HHHHHCTHHHCCCCTC CS
     Zn_clus  3 CdnCrkkKvKCdakkPaCsnCkklnleCtfyses 36
                C+ C + + KC+++ P C nC +++ +Ctf  + 
  CCE29940.1 15 CTACFSSHLKCSGDVP-CENCSRRRITCTFAARD 47
                ****************.************87765 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.4e-06     0.039      37     122 ..     155     256 ..     148     264 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.4e-06
  Fungal_trans  37 pllllailalGalfsesetkesnssltses..............qefiafplraeilihedfsspssslwilqsLlllelyektssdralher...h 116
                   +++l a+la+G  f++ ++ ++++ +++                +e i + l+ ++ + +  ++++++++il +++ll l+e++ + + + +    +
    CCE29940.1 155 NHVLQAMLAVGGMFAGRRNLTDTTARRETYlvalqhysysiaglREAI-DGLATRSKTENRRKVQDERVCILWTTFLLGLFELMNDATGHGWQqhiI 250
                   5899*****************977777755777766655555544444.3445555558999999999*************************9999 PP

  Fungal_trans 117 hgvavr 122
                   hg+ + 
    CCE29940.1 251 HGTCMA 256
                   999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3780.65
//
Query:       CCE29941.1  [L=593]
Description: related to fluconazole resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-33  113.8  38.3    8.3e-33  113.8  38.3    1.8  2  MFS_1     Major Facilitator Superfamily
      6e-08   32.0  11.0      6e-08   32.0  11.0    2.7  3  Sugar_tr  Sugar (and other) transporter
    0.00015   20.4   3.9    0.00015   20.4   3.9    2.3  3  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8  38.3   1.4e-36   8.3e-33       3     350 ..     158     539 ..     156     541 .. 0.81
   2 ?   -2.2   2.2      0.25   1.5e+03     128     158 ..     551     578 ..     547     579 .. 0.67

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 1.4e-36
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 l+++ +++a+s++++a    +ae++g+  +++ l +tl+ +g++++ l++++ls+ fGrr  v++ ++++ +++ +  + ++  + +l++ r++ +++a
  CCE29941.1 158 LVTMTAIWASSAYSAANV-QIAEEFGVGTQVAILGTTLFLFGFGIGPLLWAPLSEVFGRRLaVMVPMFVAICFS-FGSA-TAKDFqTLILTRFFGAFFA 253
                 68899999****999999.8*****************************************9999999999999.3333.355666************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllgglla..sslgWravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                 +a +++ + ++ d++++  rg a++ +++++  G++lgp+++++++  + lgWr+++y+ +i+ + +++++++++ e++p++  + +++++        
  CCE29941.1 254 SAPVTNTGGVLGDLYTPAWRGIAMAGYAMAVVGGPALGPIVSAAVThqDDLGWRWTMYLTGILQAAMLLFAIIFIDESYPPKLLVDKARRLrhdtgnwa 352
                 **********************************************888899*****************999999999999999999999899999555 PP

       MFS_1 189 .....kgtgpaplvp........awkallkdpvlw...illialllfffgfsg...lltllplylqevlglsglllaglllallalvgail....alla 264
                      +        +        a k ll++ +l+   i+++++l+++f++ +    l  +p+++ e +g++   ++++l+ l+ l+ga l     +  
  CCE29941.1 353 lhaqfE--------EwdvgiaelAHKFLLRPVQLLctpICFLMALYASFCYGIlymQLGAIPIIFGEIRGWT--PIIATLPFLCILIGATLgcslNVYN 441
                 555550........344555554568888888776667666666666666666433666788889*******..5555567777777766644434444 PP

       MFS_1 265 grlsdr........lgrrrrlllallllllaalglallavtssavllll....vlvliGfglgfvfpsllalasdlappeeagtasglfntags.lgga 350
                   + ++          +++rl  ++l+ +l++ g +l+++ts + + ++    +lvl+G+g++++f ++l++++d +   +a++a++++++++s ++ga
  CCE29941.1 442 QTVYNKyyyaagnrAVPEKRLPPMMLGSVLFSGGQFLVGWTSGPKIPWIvpciGLVLMGTGFFTIFQAALNYLVDTFQ-AYAASAVAANTFLRScFAGA 539
                 444455777766665558888888888888888888888885555555556799999***999999999999999994.99999999999888746555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.25
       MFS_1 128 agfslGailgpllggllasslgWravfyila 158
                 +g+++G+ ++ ++++ll+     + vfy+++
  CCE29941.1 551 LGVGIGSSITGGFAALLI---PVPFVFYAFG 578
                 566677767666666666...7777777765 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0  11.0     1e-11     6e-08      46     195 ..     186     334 ..     151     356 .. 0.87
   2 ?   -3.2   0.8      0.47   2.8e+03     317     339 ..     374     395 ..     364     442 .. 0.66
   3 ?   -0.8   0.2     0.086   5.1e+02      77     115 ..     463     502 ..     460     516 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1e-11
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyq 144
                     l + +fl+G  iG l+  +l+++fGR+ + ++  ++++  ++ +a+ak    ++ li+ R++  +++ +  + +   ++ + ++++Rg+ +  y 
  CCE29941.1 186 QVAILGTTLFLFGFGIGPLLWAPLSEVFGRRLAVMVPMFVAICFSFGSATAK---DFQTLILTRFFGAFFASAPVTNTGGVLGDLYTPAWRGIAMAGYA 281
                 455778899*******************************************...9******************************************* PP

                 HHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---..H CS
    Sugar_tr 145 laitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPES..P 195
                 +a++ G  ++ i+ +++ + ++  gwr++++l+ ++  ++l++  +f++ES  P
  CCE29941.1 282 MAVVGGPALGPIVSAAVTHQDD-LGWRWTMYLTGILQAAMLLFAiIFIDESypP 334
                 *******************999.**********9998888776549****9444 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHHHHHHHH..HH CS
    Sugar_tr 317 RtllllGaagmaicfvilgival 339
                 R++ ll++ ++++++++ +  ++
  CCE29941.1 374 RPVQLLCTPICFLMALYAS-FCY 395
                 6777777777777777766.222 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.086
                 HHHHHHHHHHHHHHHHHH-TTTT.SS-TGGGGGHHHHHHH CS
    Sugar_tr  77 kslliaavlfvigavlqaaakgk.nsvevlivgRvlvGig 115
                 + ++ ++vlf+ g++l +++ g    + v ++g vl+G g
  CCE29941.1 463 PPMMLGSVLFSGGQFLVGWTSGPkIPWIVPCIGLVLMGTG 502
                 679999999999****999997745667779999998866 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   3.9   2.5e-08   0.00015      61     221 ..     168     335 ..     146     349 .. 0.81
   2 ?   -2.9   0.1      0.27   1.6e+03     115     132 ..     424     441 ..     389     454 .. 0.65
   3 ?   -0.4   0.2     0.049   2.9e+02     257     288 ..     478     508 ..     462     551 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.5e-08
       TRI12  61 qasasalpnilqdvgqsensslf.stlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllg.vaagpagasplfvge 157
                  a ++a  +i ++ g   + +++ +tl+  g  +  l+   l++ fgrr  v++   + +  +   +ta+ f+tl+ +  +    a+ p   +  ++g+
  CCE29941.1 168 SAYSAANVQIAEEFGVGTQVAILgTTLFLFGFGIGPLLWAPLSEVFGRRLAVMVPMFVAICFSFGSATAKDFQTLILTRFFGAfFASAPVTNTGGVLGD 266
                 444556667888888877666542789***********************************************98776554326889*********** PP

       TRI12 158 lmsnktkflgllivsipvvvtsglspylgqrlaiqgs..wrwifyiyiitsaiavllivvwy...ypps 221
                 l +   + + +   ++ vv   +l+p +   ++ q +  wrw +y+  i+ a  +l+ +++    ypp 
  CCE29941.1 267 LYTPAWRGIAMAGYAMAVVGGPALGPIVSAAVTHQDDlgWRWTMYLTGILQAAMLLFAIIFIdesYPPK 335
                 *****9999999999*****99***********998555*******99998877777777642225554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.27
       TRI12 115 hilglvgaivgctatkfn 132
                  +  l+ga +gc+ + +n
  CCE29941.1 424 FLCILIGATLGCSLNVYN 441
                 333456666666665555 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.049
       TRI12 257 gvswggkpnspwnsakviglissglgslvvfa 288
                  v w   p+ pw     igl+  g g + +f 
  CCE29941.1 478 LVGWTSGPKIPWIV-PCIGLVLMGTGFFTIFQ 508
                 36799999999976.57899999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4358.41
//
Query:       CCE29942.1  [L=1098]
Description: related to ral2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-14   53.7   2.6    1.4e-09   38.0   0.0    5.2  5  Kelch_3   Galactose oxidase, central domain
    5.1e-14   51.9   0.7    0.00012   21.9   0.0    4.0  3  Kelch_5   Kelch motif
    6.4e-14   51.7   1.8     0.0029   17.8   0.0    5.1  4  Kelch_6   Kelch motif
    1.3e-13   50.7   0.9    7.7e-05   22.6   0.0    4.8  5  Kelch_4   Galactose oxidase, central domain
    4.3e-13   48.6   0.0     0.0016   18.0   0.0    4.6  4  Kelch_1   Kelch motif
    3.7e-10   39.4   1.2    7.1e-05   22.6   0.0    4.5  4  Kelch_2   Kelch motif


Domain annotation for each model (and alignments):
>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.14   4.2e+02      32      47 ..     266     281 ..     252     283 .. 0.88
   2 !   38.0   0.0   4.8e-13   1.4e-09       1      48 [.     284     337 ..     284     338 .. 0.90
   3 ?    4.5   0.0     0.015        45      19      47 ..     374     404 ..     346     406 .. 0.85
   4 !    5.2   0.0    0.0092        28       2      42 ..     446     489 ..     445     492 .. 0.80
   5 ?   -2.7   0.0       2.7     8e+03      21      36 ..     595     610 ..     592     623 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.14
     Kelch_3  32 aeiaslppaRaghaat 47 
                 +++++ pp+ +g+++t
  CCE29942.1 266 RTTGREPPPLVGATTT 281
                 46799*********98 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 4.8e-13
     Kelch_3   1 gdrlyifGGlgd..dg.qdrlndvyvydldtntWaei...aslppaRaghaata 48 
                 gd+ly+fGG+    ++  + ++d+y++dl +  W+++   ++ pp+R++h+++a
  CCE29942.1 284 GDKLYVFGGRILsrSRpAPLTSDLYELDLISRHWTKLqtgGDVPPPRYFHSMCA 337
                 89********99654479999**************77779*************8 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.015
     Kelch_3  19 ndvyvydldtntWa..eiaslppaRaghaat 47 
                 +d y yd+++ +W+     + p++R+ h+a+
  CCE29942.1 374 SDIYIYDVGSRKWTyvPAQDAPQGRYAHCAC 404
                 89999*********5444889*******999 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.0092
     Kelch_3   2 drlyifGGlgddgqdrl.ndvyvydldtntWaei....aslppaRa 42 
                  ++ i+GG +  g +++  +  v++l + +W+++     s+  +R+
  CCE29942.1 446 AEMIIVGGQD--GANHYiEQISVFNLRSLKWTSTqplgKSCGAYRS 489
                 6799******..76666599************88667777777776 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 2.7
     Kelch_3  21 vyvydldtntWaeias 36 
                 ++++dl t  W +i+ 
  CCE29942.1 595 LWALDLRTLVWSRIDA 610
                 899***9999999943 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.1e-08   0.00021       2      41 ..     272     314 ..     271     315 .. 0.87
   2 !   21.9   0.0   4.1e-08   0.00012       1      39 [.     326     381 ..     326     383 .. 0.83
   3 ?    4.4   0.3     0.013        39       2      13 ..     395     406 ..     394     415 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 7.1e-08
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg..rdgsv.sddvyvLdlps 41 
                 Ppp+ g+ + ++++k+Yv+GG++   ++  + ++d+y Ldl+s
  CCE29942.1 272 PPPLVGATTTILGDKLYVFGGRILsrSRPAPlTSDLYELDLIS 314
                 9**********************96644444579*******87 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 4.1e-08
     Kelch_5   1 iPppRaghcavtvs.ekiYvyGGkv...............g.rdgsvsddvyvLdl 39 
                 +PppR+ h++++++ +k+ +yGG++               +  +  v +d+y++d+
  CCE29942.1 326 VPPPRYFHSMCALGdTKMVCYGGMSpaittsqaastaeeeQqAEVTVMSDIYIYDV 381
                 6************55**********9999999887766553466666799999997 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.013
     Kelch_5   2 PppRaghcavtv 13 
                 P++R+ hca+++
  CCE29942.1 395 PQGRYAHCACIL 406
                 9********976 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   9.8e-07    0.0029       4      44 ..     277     321 ..     273     330 .. 0.85
   2 !   17.5   0.1   1.2e-06    0.0036       1      46 [.     329     394 ..     329     398 .. 0.92
   3 !    7.2   0.0    0.0021       6.3      16      46 ..     450     480 ..     445     484 .. 0.90
   4 ?    4.8   0.0     0.013        38      10      43 ..     575     608 ..     574     610 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 9.8e-07
     Kelch_6   4 ghslvsvggkiYifGGytds....spylnkvwvydpetksWeqlp 44 
                 g ++++ g+k+Y+fGG+  s     p +++++ +d++++ W++l+
  CCE29942.1 277 GATTTILGDKLYVFGGRILSrsrpAPLTSDLYELDLISRHWTKLQ 321
                 5567889***********************************987 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.2e-06
     Kelch_6   1 praghslvsvgg.kiYifGGytds.................spylnkvwvydpetksWeqlp..pl 46 
                 pr++hs+++ g+ k +++GG + +                  +  +++++yd+ +++W+ +p  + 
  CCE29942.1 329 PRYFHSMCALGDtKMVCYGGMSPAittsqaastaeeeqqaeVTVMSDIYIYDVGSRKWTYVPaqDA 394
                 799******99889********99*************************************94444 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0021
     Kelch_6  16 ifGGytdsspylnkvwvydpetksWeqlppl 46 
                 i+GG+++++ y  ++ v+++++ +W+ ++pl
  CCE29942.1 450 IVGGQDGANHYIEQISVFNLRSLKWTSTQPL 480
                 789998888899***************9997 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.013
     Kelch_6  10 vggkiYifGGytdsspylnkvwvydpetksWeql 43 
                 +++++ + G y  ss+    +w +d++t +W+++
  CCE29942.1 575 IDSHLLVSGTYLTSSKQEYALWALDLRTLVWSRI 608
                 7999*******99999999************986 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.6e-08   7.7e-05       4      49 .]     277     328 ..     276     328 .. 0.91
   2 !   20.0   0.0   1.7e-07   0.00052       1      44 [.     329     389 ..     329     396 .. 0.92
   3 ?    2.0   0.0     0.072   2.2e+02      16      44 ..     449     477 ..     438     495 .. 0.84
   4 ?   -1.2   0.0      0.73   2.2e+03      31      44 ..     595     608 ..     594     613 .. 0.87
   5 ?   -3.2   0.0       3.1   9.2e+03      18      32 ..     969     982 ..     967     993 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.6e-08
     Kelch_4   4 ghsatsipdgtiylfGGrgedg....tllndlylldlstntWrrl...gslPs 49 
                 g+++t ++ +++y+fGGr         l +dly ldl +++W++l   g++P+
  CCE29942.1 277 GATTTILG-DKLYVFGGRILSRsrpaPLTSDLYELDLISRHWTKLqtgGDVPP 328
                 78999996.9**********879*********************988888886 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1.7e-07
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedg..................tllndlylldlstntWrrl 44 
                 pR +hs+++++d + +++GG ++ +                  t+++d+y++d+ +++W+ +
  CCE29942.1 329 PRYFHSMCALGDTKMVCYGGMSP-AittsqaastaeeeqqaevTVMSDIYIYDVGSRKWTYV 389
                 8*******************999.6689*******************************976 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.072
     Kelch_4  16 ylfGGrgedgtllndlylldlstntWrrl 44 
                 +++GG+ + +     + +++l + +W+  
  CCE29942.1 449 IIVGGQDGANHYIEQISVFNLRSLKWTST 477
                 78999999999999999*********865 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.73
     Kelch_4  31 lylldlstntWrrl 44 
                 l++ldl t  W+r+
  CCE29942.1 595 LWALDLRTLVWSRI 608
                 79**********98 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 3.1
     Kelch_4  18 fGGrgedgtllndly 32 
                 +GG +++ ++++dl 
  CCE29942.1 969 IGGTTAN-ESSADLA 982
                 8999999.7988875 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.1e-06    0.0093       2      43 ..     275     321 ..     274     323 .. 0.93
   2 !   18.0   0.0   5.5e-07    0.0016       2      43 ..     330     390 ..     329     391 .. 0.90
   3 !    8.9   0.0   0.00036       1.1      13      44 ..     447     479 ..     444     481 .. 0.90
   4 ?   -1.5   0.0      0.66     2e+03      30      41 ..     596     607 ..     594     608 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.1e-06
                 BBSEEEEEETTEEEEEEEBCS.....SSBEEEEEEEETTTTEEEEEC CS
     Kelch_1   2 ragagavvvggkiYviGGsdg.....gnalssvevyDpetntWrelp 43 
                   ga+ + +g+k+Yv+GG+          +s+++ +D+ +  W++l 
  CCE29942.1 275 LVGATTTILGDKLYVFGGRILsrsrpAPLTSDLYELDLISRHWTKLQ 321
                 5789999*************************************985 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 5.5e-07
                 BBSEEEEEE.TTEEEEEEEBCS..................SSBEEEEEEEETTTTEEEEEC CS
     Kelch_1   2 ragagavvv.ggkiYviGGsdg..................gnalssvevyDpetntWrelp 43 
                 r+ ++++++ ++k+ + GG++                    + +s++++yD+ + +W+++p
  CCE29942.1 330 RYFHSMCALgDTKMVCYGGMSPaittsqaastaeeeqqaeVTVMSDIYIYDVGSRKWTYVP 390
                 6677777662579**********************************************98 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00036
                 EEEEEEEBCS.SSBEEEEEEEETTTTEEEEECC CS
     Kelch_1  13 kiYviGGsdg.gnalssvevyDpetntWrelps 44 
                 ++ ++GG+dg + +   + v+++++ +W+   +
  CCE29942.1 447 EMIIVGGQDGaNHYIEQISVFNLRSLKWTSTQP 479
                 5789************************98666 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.66
                 EEEETTTTEEEE CS
     Kelch_1  30 evyDpetntWre 41 
                 +++D++t  W++
  CCE29942.1 596 WALDLRTLVWSR 607
                 99********98 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.4e-08   7.1e-05       1      46 [.     274     321 ..     274     324 .. 0.94
   2 !    7.4   0.1    0.0015       4.4       5      47 ..     333     391 ..     329     393 .. 0.78
   3 ?    4.6   0.0     0.012        35      10      49 .]     444     481 ..     434     481 .. 0.88
   4 ?   -1.4   0.0       0.9   2.7e+03      31      44 ..     594     607 ..     573     612 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.4e-08
     Kelch_2   1 rrgghsssvpggkiyvvGGa..htdnpnlsssdvhvldlekhvWeevt 46 
                 +++g +++ +g+k+yv+GG+   ++ p   +sd++ ldl ++ W++++
  CCE29942.1 274 PLVGATTTILGDKLYVFGGRilSRSRPAPLTSDLYELDLISRHWTKLQ 321
                 67899999*************************************997 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0015
     Kelch_2   5 hsss.vpggkiyvvGGa...............htdnpnlsssdvhvldlekhvWeevtp 47 
                 hs++  ++ k++ +GG                + +  + + sd++++d ++++W+ v++
  CCE29942.1 333 HSMCaLGDTKMVCYGGMspaittsqaastaeeEQQAEVTVMSDIYIYDVGSRKWTYVPA 391
                 44442668888888888888888888888877777778888***************986 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.012
     Kelch_2  10 pggkiyvvGGahtdnpnlsssdvhvldlekhvWeevtplg 49 
                 +g  +++vGG   d+ n++++ + v++l++ +W+ ++plg
  CCE29942.1 444 GGAEMIIVGGQ--DGANHYIEQISVFNLRSLKWTSTQPLG 481
                 56678999999..**********************99986 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.9
     Kelch_2  31 dvhvldlekhvWee 44 
                  ++ ldl++ vW++
  CCE29942.1 594 ALWALDLRTLVWSR 607
                 47889999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1098 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 7318.20
//
Query:       CCE29943.1  [L=633]
Description: related to FAT1-very long-chain fatty acyl-CoA synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-64  216.0   0.0      9e-64  215.6   0.0    1.2  1  AMP-binding    AMP-binding enzyme
    5.7e-07   30.4   0.1    1.1e-06   29.5   0.1    1.5  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.6   0.0     1e-67     9e-64       9     420 ..      67     493 ..      57     496 .. 0.81

  Alignments for each domain:
  == domain 1  score: 215.6 bits;  conditional E-value: 1e-67
                  TTSEEEEECCSTEEEEHHHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCC CS
  AMP-binding   9 pdkvalvdsgegqtlTYreldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdse 105
                    k  l++  eg++l+Y+++++++ r+++++r +l++k+ d+Va+  +ns  +++++l+++++Ga ++ +n +lt + l++++  +++k+++  +d +
   CCE29943.1  67 AHKDLLIF--EGRKLSYAQVYDKALRYGSWMRtALNIKPNDVVAMDFENSDTFIFVWLGLWSIGAKPAFINYNLTGKPLSHCIGVAKSKICL--IDPT 160
                  35666788..9*********************************************************************************..6666 PP

                  C.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCCTTT CS
  AMP-binding 106 l.leklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfklked 202
                     +  +e++ +l +v+ v+++++ +l+  ++++e+ ++++         e + ++la++iYTSGTTG PK +++s + ++a   +++ et    + +
   CCE29943.1 161 VaGNFTDEVRNELSHVQFVLLTHDVRLQVDATAPERVPDSD-------LFEDDMSNLAILIYTSGTTGSPKPAVVSWAKVIAG-GTFS-ETLLARGGN 249
                  65555777788888999999988877777766666664443.......225689****************************9.5543.333445569 PP

                  -EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT.-SEEEEESS-EBHHH CS
  AMP-binding 203 dvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlss.lrlvllggeplspel 299
                  d +++ +pl+h+++  l+ + ++l+G+t  + +k+++   k+++  +++ ++t+i++v + l++ll++++    +  k + + ++++ + g+ l+p++
   CCE29943.1 250 DIIYTSMPLYHSAASLLSFCSTILAGSTQAIGRKFST---KVFWMEVRQSNATIIQYVGETLRYLLAAPPQHDPVIGKCMDKnHKVTAAFGNGLRPDI 344
                  **************99*****************9988...567799999****************996544432233356666888889********* PP

                  HHHHHHHHTC.EEEEEEEEGGGSSECEECHCTTTCTSTTS-B.........EE-TTEEEEEE..-TTTSCBEE...........TTSEEEEEEE.ETT CS
  AMP-binding 300 lrffralfge.evlegYGlTEttgvvtvlpleedkkklgsvG.........kplpgvevkiv..Deetgepvp...........dgeeGellvr.gpg 373
                  +  f+++fg  +vle YG TE    + +l   ++++++g vG         +      +++v  D+ t  p +            g++Gel  r  p+
   CCE29943.1 345 WNGFKERFGIdTVLEFYGATEGPFSLWNLS--RNDHTAGAVGrsgllygglQS---LSLAVVklDWVTHLPTRnpktgfcikvtAGHPGELISRlDPQ 437
                  *********999**********99997444..333477888855566655433...3333332277766666577888888899********995554 PP

                  ....S-SEBTT-HHHHHHHEEE....TCC.EEEEEEEEEEETTSEEEEEEECCCEE CS
  AMP-binding 374 ....vmkgYlkkpeataeafds....egr.wlrTGDlgrldedGyleivgRkkdli 420
                       ++gY+++++at+++++     +g+ w+r+GD+ r+d+dG++++++R+ d+ 
   CCE29943.1 438 nirrRFQGYYGNKDATSSKIIRdvfrKGDaWFRSGDVTRWDADGRMYFMDRIGDTY 493
                  3444799**************779875666**********************9985 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   1.3e-10   1.1e-06       1      68 [.     504     573 ..     504     578 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.3e-10
                    HHHHHHHSSTTEEEEEEE-----.TTS---EEEEEE----.--HHHHHHHHHHHHT-TTTS-SEEEE-S- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpde.vkGealvafVvlkdgs.ealeeeLkahvrkelgpyavpkkvvfvde 68 
                    ev +a+ +hp V+ea V+Gv  +  +G+a ++ ++ ++ + e + + L  hvr++l+ ya p  +++++e
     CCE29943.1 504 EVSEAVGRHPSVREANVYGVALPhHDGRAGCVAITFDAKPnENVLRSLAGHVRSTLPRYAQPIFLRVLKE 573
                    67799******************99****9999998433324589*****************98888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4708.17
//
Query:       CCE29944.1  [L=539]
Description: related to GPI transamidase component PIG-S [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-161  538.3   0.5   2.3e-161  538.1   0.5    1.0  1  PIG-S     Phosphatidylinositol-glycan biosynthesis class S pr


Domain annotation for each model (and alignments):
>> PIG-S  Phosphatidylinositol-glycan biosynthesis class S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  538.1   0.5  1.3e-165  2.3e-161       1     512 []      41     525 ..      41     525 .. 0.93

  Alignments for each domain:
  == domain 1  score: 538.1 bits;  conditional E-value: 1.3e-165
       PIG-S   1 afvlvvlllGlPlWwktTtiyRapLPleeiealadgkacrvtfplevvvdasslpeeeaekllkevqqalddllekkefsletrwslrlklseseeqee 99 
                 +f+++vl+lGlP+Ww+tT+iyRa+LPle++ ++adgkacr+tfpl++ ++a+++ ++ea++l + +q+alddl+   +f +   ++lrlkl +  ++++
  CCE29944.1  41 SFWIIVLFLGLPIWWRTTSIYRADLPLERMLQWADGKACRPTFPLQITIRADTIAKQEAQHLTRLTQHALDDLN---DFAG---HHLRLKLDQAWNMNS 133
                 79************************************************************************...9999...999999998888776 PP

       PIG-S 100 .seseeeedgaltvrllpeedlstssaelskeskaldvvyppnsv...ssssdklsafvaeelvelfleeeeealisasksellsts............ 182
                   +++ ++++ lt++l p++   t sa+ls+es+ ld++y p+s+   ++ s++l++++a+el+++f+ee  +++is    +    s            
  CCE29944.1 134 aIAKQYDPESTLTINLSPGQ---TNSASLSPESPILDMTYAPHSIpslHAASSPLATYIANELQTIFAEE--QSIISYLLFT----Ssmssktrpqglt 223
                 655778999***********...7889******************65444********************..8888854433....33344789***** PP

       PIG-S 183 ........krttrsikysptyhLsfsllnedpepssWdieaaleeylsplldaLspianftvetqvqyyaplslkpefeevaavvlskddLssfvnaaE 273
                         krttr+++y+ptyhLsfsl++ ++ p +Wdi+aa++ey++plld L+pi+nft++tqvq+ya+         v++++l+k++L sfvnaaE
  CCE29944.1 224 tdtaavlsKRTTRALRYAPTYHLSFSLFTDGVFPNTWDIDAAISEYMKPLLDVLRPIHNFTIDTQVQLYATPG-------VQSQTLNKEHLASFVNAAE 315
                 ********99*************************************************************66.......56889************** PP

       PIG-S 274 wslsssisssptlnFvvyvPsksespllikdstgeqsktnsfliPqWGgvvilnppaeekksegsssaelseeelkevmevFssqLrsLLGlpseekle 372
                 w+ls+si+++pt+nF+++v++++  +   + ++     ++s++iPqWG+v++l +p  e        +++++++lk +m +F ++L++LLG+p+     
  CCE29944.1 316 WPLSPSIGGAPTVNFIIFVGNQTIGSNDAEVEN-----SQSWMIPQWGSVYLLHMPPAE--------SHVPTKALKHPMLMFGRHLLTLLGTPQ----- 396
                 ********************9999876444444.....66*************999985........8*************************4..... PP

       PIG-S 373 essspaslpllreweldtlkrrrtlelllsassTLgSLarLveslpnivIpdeVaedVesalellesaldaleegrleealasareaealaerAFFdps 471
                     ++slpl    +l+tl r+rt++lll+a+s+LgSLarL+ slp+i+Ip++Va+ V+s+l++le+a+++l     +e l +a++ae++aerAFF++s
  CCE29944.1 397 ----SGSLPL----RLSTLARIRTMDLLLRAASSLGSLARLSPSLPSISIPRTVADGVSSSLQHLEQACANLGG---TEGLLHAQTAEEEAERAFFEKS 484
                 ....448889....**********************************************************76...79******************** PP

       PIG-S 472 mlgqlYFPdEhkvAVYlPLlgPvlvplllgllkelkelkkr 512
                 m+gqlYFPdEhk+AVYlPLlgP +vpl+lg+++e+++++kr
  CCE29944.1 485 MVGQLYFPDEHKIAVYLPLLGPTGVPLVLGAINEIRNWIKR 525
                 **************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3611.54
//
Query:       CCE29945.1  [L=447]
Description: uncharacterized protein CPUR_03792 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.025   14.1   0.0       0.17   11.3   0.0    2.0  2  Peptidase_S9  Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.032   5.7e+02      57      79 ..     140     163 ..     113     165 .. 0.71
   2 ?   11.3   0.0   9.5e-06      0.17     135     192 ..     371     430 ..     364     444 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.032
                   HTT.S--GGGEEEEEETHHHHHHH CS
  Peptidase_S9  57 keg.yvdserlaitGgSyGGyltg 79 
                   + + + +++ l + G SyG ++t+
    CCE29945.1 140 SSEkFESPSLLLMGGYSYGAMVTM 163
                   444477888888999999999875 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9.5e-06
                   -CGGG--.---EEEEEEETT-SSS-THHHHHHHHHHH.--S-SEEEEEETTS-SSTTSSH CS
  Peptidase_S9 135 spldnvk.aypplLlihGlaDdrvppaealklvaaLq.kkgknvlllifpdegHgvgkpr 192
                   ++++++k + +p+L + G++D  vp+ +   + ++L  + g ++       +gH   +++
    CCE29945.1 371 DDAAQKKlVHNPTLAVFGDNDLFVPVGKLRSWTTKLSsRDGSKFTACEVCHAGHFWTEES 430
                   5556656699***************************566666***********766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3233.08
//
Query:       CCE29946.1  [L=502]
Description: probable aldehyde dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.6e-180  600.6   0.2   1.8e-180  600.4   0.2    1.0  1  Aldedh          Aldehyde dehydrogenase family
  ------ inclusion threshold ------
       0.16   11.4   0.0       0.37   10.3   0.0    1.6  1  Cytochrom_B559  Cytochrome b559, alpha (gene psbE) and beta (


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  600.4   0.2    2e-184  1.8e-180       2     462 .]      28     494 ..      27     494 .. 0.98

  Alignments for each domain:
  == domain 1  score: 600.4 bits;  conditional E-value: 2e-184
                 ET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHH CS
      Aldedh   2 veses.etievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidv 96 
                 v+s++ ++i +inP++ge+i+ v+aa+++dvd+av+aA++afk  +w++++  +R+ +++++adl+e+++  la++et+++Gkp++ +   +++e+i +
  CCE29946.1  28 VQSTAsRKITSINPSNGEEICIVEAASPADVDRAVDAARAAFKhpSWRDMTGGDRGMLMHRLADLIEQNRRVLATIETWDNGKPYSVSFDeDLAEVIAC 126
                 56666467**********************************9889*****************************************9999******** PP

                 HHHHHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCC CS
      Aldedh  97 lryyaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgse 195
                 +ryya++a+k++g ++p++++kl ++ ++P+Gv+++I+PWN+Pl++aawkl pala+GNt++lKP+e+tpls+l +a+l+++ag+P+gvln+++g+g+e
  CCE29946.1 127 IRYYAGWADKIHGLTIPTTTSKLVYTLKHPIGVCAQIIPWNYPLAMAAWKLGPALATGNTIILKPSEQTPLSMLFVANLVRQAGFPPGVLNILNGYGRE 225
                 ******************99******************************************************************************* PP

                 HHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHH CS
      Aldedh 196 vgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaak 294
                 +g al++hp+++k++ftGst++gr+i+k a+ ++k+vtlE+GGk+pl+v++daD+++a++++  g+++n+GQvC+a+ rllv++ i d+f+++l+ ++k
  CCE29946.1 226 AGTALASHPGINKIAFTGSTQTGREIMKMASISIKNVTLETGGKSPLLVFSDADIEQAAKWAFVGIMSNQGQVCTATARLLVHRPILDKFTQALIHEIK 324
                 **************************************************************************************************6 PP

                 T-.-BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT..E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHH CS
      Aldedh 295 kl.kvgdpldedtdvGPliseaqlekvekyveeakeegaklllGge..reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieia 390
                 +  k+gdp+ edt+ GP++seaq++k++kyve+ak++gakl +Gg   ++++g++kg+f+ePt+++nvt+dm+++q+E+FGP++++++f+de +a+e+a
  CCE29946.1 325 TSvKIGDPFSEDTTHGPQVSEAQYDKIMKYVESAKAQGAKLEMGGLsaHTTKGQKKGFFIEPTLFSNVTRDMDVFQDEVFGPLVTITPFEDESDALEMA 423
                 544******************************************9998899*********************************************** PP

                 HSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 391 NdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 Nd+ yGLaa+vf++++era+rva++leaG+v+iN+s++++++  pfgGvkqSg+Gre g++gl +yte+k+v
  CCE29946.1 424 NDSIYGLAAAVFSQNVERAHRVAAALEAGMVWINSSNDSDVQV-PFGGVKQSGIGRELGEAGLAAYTETKAV 494
                 *******************************************.**************************97 PP

>> Cytochrom_B559  Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   4.1e-05      0.37       4      24 ..     119     144 ..     117     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.1e-05
  Cytochrom_B559   4 pfsypIftvRwla.....IHalavPt 24 
                     ++++ I  +R+ a     IH+l++Pt
      CCE29946.1 119 DLAEVIACIRYYAgwadkIHGLTIPT 144
                     678889999998777799*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3649.63
//
Query:       CCE29947.1  [L=569]
Description: related to HNM1-Choline permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-54  183.7  52.1    6.6e-54  183.4  52.1    1.1  1  AA_permease_2  Amino acid permease
      5e-18   65.0  47.0    9.9e-18   64.0  47.0    1.4  1  AA_permease    Amino acid permease
    2.6e-05   23.9   1.8    8.7e-05   22.2   1.8    1.8  1  DUF1182        Protein of unknown function (DUF1182)


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.4  52.1   1.1e-57   6.6e-54       1     424 [.      39     492 ..      39     494 .. 0.85

  Alignments for each domain:
  == domain 1  score: 183.4 bits;  conditional E-value: 1.1e-57
  AA_permease_2   1 lsllsafalvigsvigsgifvkn....laasggpalilwvwiavligslavllvyaEl.ssalprsgGiyvytkaaf....gkkvaflsawfnwfa 87 
                    +sl+s fal++ ++  + ++++     ++a+ggp+ ilw+++ v ++ ++v+  + El ss +p+  G+  + ++++    g+++ +++aw+n+f+
     CCE29947.1  39 FSLWSMFALAFCVLG-TWSTMAQdlatGLANGGPLGILWGLLLVTACNTCVAVSLGELvSS-MPTALGQAYWISHLWntpsGRFASYMCAWINTFG 132
                    79*********9874.444444447779999***************************999.**************9888889999********** PP

  AA_permease_2  88 yvpvlasilsvaasyllna...lgp..dlqgntwltyliaiaililvalinirgike...sakiqnilgilkillpliiliilglitvdgggfssl 175
                    ++  +as ++ ++++ll +   ++p  ++  + wl++++++ai+i+++lin+ + ++   +  ++n++gi+    +++ + ++ li v+   +s+l
     CCE29947.1 133 WWTLTASQIAFMTQFLLAMklmFDPswEGAAQGWLQFVVYVAITIFFTLINYGACRKdwiLPAFNNFVGIAFGG-LFVAFSLALLISVGT--SSDL 225
                    ***99888888888887766656774444446**********************9964437999***9999995.656666666666633..3333 PP

  AA_permease_2 176 .......stetdtffpngwp.gv..llgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpd.deianlsnlgs 258
                           +  + +++++gw+ gv  +lgl ++++ +++f+s+++++ee  ++++++p+++ +++li +++++ ++++ l++++  d++ ++++ + 
     CCE29947.1 226 kfqppsfV-FGQWINKTGWSdGVvwFLGLVQSAYGLTAFDSVIHMVEEipAPRRNAPRTMYLAVLIGALSGFIFMVVCLFCIQNvDNVLEPASGNP 320
                    34556543.333688889997655799*********************5555699***************************99677766666555 PP

  AA_permease_2 259 vaalffeavggkvvaiivvilialsllgaintavigssrvlealardgvlP..rffakvn.kfgspiraiiltaivslillllfllassaaynfll 351
                    +++l++ + g +v+ +++v l+++  +g + + +++ssr+ +++ardg++P   +f+kv+ +++ p ra++l++ + ++l++l+l+a ++ +++++
     CCE29947.1 321 FIQLLMSTIG-PVGGAVMVGLFIFNGFGQGSSILTSSSRLTWSFARDGGFPfgLWFSKVDeAWNVPGRALWLQCFIISLLGVLYLFA-NTVLQAIF 414
                    78******99.*************************************************99************9999********9.7******* PP

  AA_permease_2 352 svsslgliisylll.iigalilrkkrp.....hlkrpgkilvaiigalfllfllvalffppkgpatqssliytiiltva 424
                    svs+++l isy+++  +++++ r++ p     +l+r g + v++++++++ ++ v++ffp+    +   ++++i+++++
     CCE29947.1 415 SVSTIALTISYAIPiGVLMVVGRDQLPpggqfNLGRLG-PFVNWTSIIYCSITTVFFFFPSSPNPAAGDMNFAIVVFGV 492
                    **************556667788887733322334444.89*******************99888999*****999876 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0  47.0   1.7e-21   9.9e-18       3     466 ..      47     502 ..      46     512 .. 0.75

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 1.7e-21
  AA_permease   3 lvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasil 100
                  l ++++g ++t+    l+  l+++Gplg+l ++ll++++ ++v++slge+++ +p + g ++++s+ +    G + +++    wi +++  + +as +
   CCE29947.1  47 LAFCVLGTWSTMA-QDLATGLANGGPLGILWGLLLVTACNTCVAVSLGELVSSMPTALGQAYWISHLWNTPSGRFASYM--CAWINTFGWWTLTASQI 141
                  5689999999875.799**************************************************988777777666..45555555555555544 PP

  AA_permease 101 iqfwelvtdlpkawvt...........gavflvvlliinlvgvkvygeaefi...lalikiiaiiafiivg.iillaggkpnkgagfrflgdngsifk 183
                    + +++ ++  ++              +v +++ ++++l++  + ++  +i   ++ +++ia+ ++++ +   ll++ +++ +     ++ ++++f 
   CCE29947.1 142 AFMTQFLLAMKLMFDPswegaaqgwlqFVVYVAITIFFTLINYGACRK-DWIlpaFNNFVGIAFGGLFVAFsLALLISVGTSSD---LKFQPPSFVFG 235
                  444444444444443344555566665778888888888889999999.888899999******99888887777777777777...56666777555 PP

  AA_permease 184 nnlppgfakeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifik 281
                  +++ +     + +    ++ ++v+++ ++t + +v+ + +E+  P+++ P+ +  +v++ +++  ++++++ ++++  d  l  +s     pf+  ++
   CCE29947.1 236 QWINKT----GWSDGVVWFLGLVQSAYGLTAFDSVIHMVEEIPAPRRNAPRTMYLAVLIGALSGFIFMVVCLFCIQNVDNVLEPASG---NPFIQLLM 326
                  555555....4455567899********************************************************99977666444...56888888 PP

  AA_permease 282 esgvsvlaplinaviltaalssansslysasRvlyslakdglaP...kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisalig 376
                  ++  +v + +++ + + + ++ ++s+l+s+sR+ +s+a+dg +P   ++ k+ + ++vP ra+ l ++i  l+ +l  ++ +  +v + + ++s+++ 
   CCE29947.1 327 STIGPVGGAVMVGLFIFNGFGQGSSILTSSSRLTWSFARDGGFPfglWFSKVDEAWNVPGRALWLQCFIISLLGVLYLFA-N--TVLQAIFSVSTIAL 421
                  888888888999999999****************************99999999*********99766555554333333.3..56777777777777 PP

  AA_permease 377 livwlliilsylrf.Rkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgv 466
                   i + + i  ++++ R +l   g      +   +l+p+  ++ ++ ++i +++ ++  +    +     g  +fa +  +v+l+++i+++v
   CCE29947.1 422 TISYAIPIGVLMVVgRDQLPPGGQ-----FNLGRLGPFVNWTSIIYCSITTVFFFFPSSPNPAA-----GDMNFAIVVFGVMLVVAIGFWV 502
                  777777666666431444333333.....23457899999999988888877766665544222.....3455666666666666666555 PP

>> DUF1182  Protein of unknown function (DUF1182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   1.8   1.5e-08   8.7e-05      53     153 ..      79     182 ..      73     189 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.5e-08
     DUF1182  53 llrslkstivfvtlgsfllslplillqaylvvflqalvepvytvavcsllknitssttsaaqvlp...lavalyryrivvlkkkmsswfvvvvhiivst 148
                 ll +  +t v v+lg ++ s+p  l qay + +l+ +   +++ ++c+ + ++   t +a q+     + +a+   +    ++    w+  vv++ +++
  CCE29947.1  79 LLVTACNTCVAVSLGELVSSMPTALGQAYWISHLWNTPSGRFASYMCAWINTFGWWTLTASQIAFmtqFLLAMKLMFDPSWEGAAQGWLQFVVYVAITI 177
                 6778889***********************************************9999999987511155666666777789999***99999999988 PP

     DUF1182 149 ifivi 153
                  f +i
  CCE29947.1 178 FFTLI 182
                 77665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4106.61
//
Query:       CCE29948.1  [L=708]
Description: probable peroxisomal amine oxidase (copper-containing) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-157  523.6   0.0   4.4e-157  523.2   0.0    1.1  1  Cu_amine_oxid    Copper amine oxidase, enzyme domain
    1.1e-17   64.3   0.0    2.6e-17   63.1   0.0    1.6  1  Cu_amine_oxidN3  Copper amine oxidase, N3 domain
      3e-10   40.2   0.1    5.2e-10   39.4   0.1    1.4  1  Cu_amine_oxidN2  Copper amine oxidase, N2 domain


Domain annotation for each model (and alignments):
>> Cu_amine_oxid  Copper amine oxidase, enzyme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  523.2   0.0  7.4e-161  4.4e-157       2     410 .]     258     677 ..     257     677 .. 0.97

  Alignments for each domain:
  == domain 1  score: 523.2 bits;  conditional E-value: 7.4e-161
                    ----TT---SEEETTTEEEETTEEEEEEEETTTEEEEEEEEETT......EEEEEEEEEEEEEEEE--SSHHHHH-EEEGGGT.-SGGG-----TT CS
  Cu_amine_oxid   2 evvqpeGpsfkvdegnlvewqkWsfrvgfnrreGlvlhdvrykg......rrilyrlslsemvvpYgdprppasrkaafDlgeyglGklansLelg 91 
                    +++qpeG+sf++ +gn+++w++ ++++gfn+reG+vl+dvr+ +      r+++ rls+ emvvpYg+p+pp+++k+afD+geyg G ++nsL+lg
     CCE29948.1 258 DITQPEGVSFQM-RGNEIQWANLKMHIGFNYREGIVLSDVRMYDpyekreRTVFNRLSVVEMVVPYGNPSPPHHKKHAFDVGEYGTGLMTNSLKLG 352
                    79**********.8********************************************************************************** PP

                    TSS-TT-EEEEEEEEE..TEEEEEEEEEEEEEEE-S-SEEEE-S....EEEE--EEEEEEEEEEETTEEEEEEEEE-TTS-EEEEEEEEE----EE CS
  Cu_amine_oxid  92 cDClgeityldavladssgepvtiknaiCifEedagilwkHtdfrtgraevtrnreLvvrtiatvgNYdYifdyiFkqdGsievevratGilstaa 187
                    cDC+g i+yld+v+++s+g+p +i+naiCi+Eed+g+l+kH+dfr+ ++ ++r+r+L++++i+t +NY+Y f++iF +dG+ ++ev++tG+l+t++
     CCE29948.1 353 CDCKGAIHYLDGVVSTSKGQPAVIPNAICIHEEDNGLLYKHMDFRDANSISARDRKLIISQIITAANYEYGFYHIFSLDGTYKLEVKLTGMLNTYC 448
                    ************************************************************************************************ PP

                    -T......GG--EEETTEE---EEEEEEEEEEE-T.SSEEEEEEEEE-T...TT.T-...-EEEEEEEEEE--BGGG-EE--.-GG-EEEEEEEEE CS
  Cu_amine_oxid 188 laeeee.skygtrvapgvlasiHqHlfslrvDldidgeknsvveeelvp.eepelgeenpagnafkvektvletekeaaldldpeknrvlkivnen 281
                    l+++e+ ++ygt+vapg++a++HqH+fslrvD++idg +nsv+++++vp  +p  +een++gn+f+++kt l+t+k++a+++ +e++r+++i+n+n
     CCE29948.1 449 LHPSETaAPYGTEVAPGIVAHNHQHIFSLRVDPEIDGPNNSVLQSDAVPsDAPLGSEENMYGNGFYCKKTLLKTAKQGAVNYCHETQRTWDIINPN 544
                    ***99558*****************************99**********76677778*************************************** PP

                    EE-.TTS-EEEEEEE-S----..---SS-TTTTTTTGGGG-SEEEEE--TT---S--TTGG-TTS....-..--GGGG-.S--B-SSEEEEEEEEE CS
  Cu_amine_oxid 282 kkn.klgepvgYklvpssaasqlllakesslvakraefakhhlwvtkykdselyaageynnqskg...ep..vglakwvednesieneDlVvWvtl 371
                    k n ++++p gYk++++s  +++llak++s++ kra+f++++lw+++ykd ely+ag+y+ qs+g   +p   ++ +w +++e ien+D+V+++++
     CCE29948.1 545 KMNeSSKKPIGYKIINNS--CPPLLAKPGSTLYKRANFTHKNLWIVPYKDYELYPAGDYVCQSTGednHPynSTILDWSNRDEPIENTDIVCYLQF 638
                    ****************55..999*************************************99999766345689********************** PP

                    EEEE---GGGSS-TTTSEEEEEEEEES-SSS-GGGG-S- CS
  Cu_amine_oxid 372 GltHvpraeDfPvmpvetvsflLkPvnFfdenpaldvpp 410
                    GltH+pr eDfP+mp+e vs++++ +nFf++npal vpp
     CCE29948.1 639 GLTHFPRCEDFPIMPCEPVSIMMRASNFFERNPALWVPP 677
                    ***********************************9985 PP

>> Cu_amine_oxidN3  Copper amine oxidase, N3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   4.3e-21   2.6e-17       1      95 [.     131     225 ..     131     229 .. 0.96

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 4.3e-21
                      S---HHHHHHHHHHHHTGGGGHHHHHHHHTTT.T---EEEE--SS-SSST.T--EEEEEEEE--SSS.-GCGSEEE.EEEEEE--SSSGGG-EE CS
  Cu_amine_oxidN3   1 ppvlleelaeieevikelpqfkealkkrgienldkvvltpltvgyrgeksegkRllkalvyyrtesa.nlyahPiegLellvDleakkvieitd 93 
                      p ++le+l+ +e++ +++p ++e++++ gi++++k +++ + +g++++++ ++R+++ lvyyr+++  n+yahP++ + ++ D+e ++v++ ++
       CCE29948.1 131 PTLTLEDLDCLERIARSDPCVIEVCAEIGITDMSKIYIDGWAIGFDDRWGFERRVQQGLVYYRDSEYdNQYAHPLD-FSVIADTERQEVLAVDV 223
                      6799***********************************************************99988********.**************999 PP

                      EE CS
  Cu_amine_oxidN3  94 qk 95 
                      + 
       CCE29948.1 224 RR 225
                      87 PP

>> Cu_amine_oxidN2  Copper amine oxidase, N2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.1   8.6e-14   5.2e-10       1      86 [.      40     125 ..      40     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 8.6e-14
                      HHHHHHHHHHHHHCCCCCCCCTCT-TTSEEEEEEEEE---HHHHHHHHHCH---S-EEEEEEEEETSSS..SEEEEEEEEEECCSEEE CS
  Cu_amine_oxidN2   1 hpLdaltaaeinkvesilkssaletskknsffeveLeePdKkavlqflekgeppppRkAsvvilfGkqt..kelvvdLatgkllspry 86 
                      hpLd l+++ei  +   +++     sk++ f+ ++L+eP+K+ + +f+++++  p R+ ++++l+ + +   e + +L+ +k+  +++
       CCE29948.1  40 HPLDQLSVQEIAIAARLIREFD--SSKQLKFNCLTLREPKKNEYAAFRARKGSRPDRRVFAIVLELGTSevVEVIANLTKSKVELWKP 125
                      9**********98887777766..99**************************************9655546899999****9988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 5158.55
//
Query:       CCE29949.1  [L=394]
Description: uncharacterized protein CPUR_03796 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-16   58.3   0.0    2.6e-13   49.2   0.0    2.1  1  PAF-AH_p_II      Platelet-activating factor acetylhydrolase, 
    5.1e-06   25.6   0.0    9.8e-06   24.7   0.0    1.4  1  Chlorophyllase2  Chlorophyllase enzyme
    0.00011   21.6   0.0       0.16   11.2   0.0    2.2  2  Hydrolase_4      Serine aminopeptidase, S33
    0.00014   21.7   0.0      0.019   14.8   0.0    2.3  2  Abhydrolase_5    Alpha/beta hydrolase family
    0.00047   20.8   0.3    0.00047   20.8   0.3    1.8  2  Abhydrolase_6    Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.019   14.8   0.0    1.3  1  Lipase_3         Lipase (class 3)
       0.02   14.6   0.0       0.24   11.0   0.0    2.0  2  Abhydrolase_1    alpha/beta hydrolase fold
      0.095   11.7   0.0        7.2    5.5   0.0    2.2  2  Chlorophyllase   Chlorophyllase
       0.14   11.9   0.1       0.26   11.0   0.1    1.5  1  PGAP1            PGAP1-like protein


Domain annotation for each model (and alignments):
>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   1.3e-16   2.6e-13      89     327 ..     122     331 ..     116     369 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.3e-16
                  EET--B--SS-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT.......--EEEE-----GGGHHHHHHHHHH CS
  PAF-AH_p_II  89 kknellktkekyPlivFsHGLgafRtlYsalcielAskGfvvaavEHrDesAaatyvlkdklaaeeeeevvesrekewiklrkvkeeeevklrneqvk 186
                  ++n + ++ +kyP+++F  GL  +R lY a + +lAs+G+vv++ +H  e+     +         + +vv+ r+     l+     ++ ++++  v+
   CCE29949.1 122 SSNRNTRPVKKYPVVLFTPGLQESRLLYGAGARSLASRGYVVITTDHPLEASF-VEF--------PDGTVVQGRN-----LS----SDDDSVKKMIVN 201
                  678899999************************************99866433.333........2234667777.....33....3456799999** PP

                  HHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH-TTS-EEEEES---T.TS-GGGGGG--S-EEEEEET CS
  PAF-AH_p_II 187 qRaqEcskaLkllreinlGepvenvldsdfdlqqlKdnldtskvaviGHsFGgAtvikslsedteFrcaialDaWml.PveeevyskvrqPllfinse 283
                   R+ ++s +   + ++++ +  e +l+       l  ++d +k++v GHs GgA ++     d++   +i lD+ +  Pv++     v +P l+    
   CCE29949.1 202 VRTADLSFV---IDQLHESTLMESLLGP-----YLSRSMDLEKIIVYGHSLGGAAAASLARADKRVLGGIDLDGQIVePVRSLG---VDKPFLLA-GR 287
                  ***999875...6677778888888875.....477899****************9999999***********98654888875...56787655.44 PP

                  TT--HHHHHHHHTT--TTS-.EEEEEETT--GGGGSGGGGSS-HH CS
  PAF-AH_p_II 284 kfqtaedikkmkkvvslkke.skvitvkGsvHqnfsDftfvlgkl 327
                  + ++aed +  +++ ++ +  +  ++++G+ H++f+D ++++  l
   CCE29949.1 288 QNHSAEDAT-WNQFWPNLRGpRVELAINGTAHASFTDRPLLVSAL 331
                  455566655.556666655505569*************9998765 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   4.9e-09   9.8e-06      16     113 ..     132     258 ..     127     281 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 4.9e-09
  Chlorophyllase2  16 eYpvllflhGylllnslYsqlLkhiashgfivvap..............................qlykvaeada.keiksaakvlnWlakg.L 77 
                      +Ypv+lf+ G++    lY    +++as g++v+                                +        +   +   + v++ l++  L
       CCE29949.1 132 KYPVVLFTPGLQESRLLYGAGARSLASRGYVVITTdhpleasfvefpdgtvvqgrnlssdddsvkK------MIVnVRTADLSFVIDQLHEStL 219
                      8**********************************************9999977654443332211......1111112222333444443332 PP

  Chlorophyllase2  78 esvlp.......eevepdlsklalsgHSrGgktafalalgkak 113
                                   + + dl+k+ + gHS Gg +a++la   ++
       CCE29949.1 220 ----MesllgpyLSRSMDLEKIIVYGHSLGGAAAASLARADKR 258
                      ....22333455455679******************9977655 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00065       1.3       5      39 ..     134     168 ..     131     169 .. 0.94
   2 !   11.2   0.0   7.9e-05      0.16      76      99 ..     235     258 ..     224     304 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00065
  Hydrolase_4   5 avvvlvHGlaehsgryaelaeaLaaqGfavyalDh 39 
                   vv++ +Gl e+   y   a+ La +G+ v++ Dh
   CCE29949.1 134 PVVLFTPGLQESRLLYGAGARSLASRGYVVITTDH 168
                  589*******************************9 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 7.9e-05
  Hydrolase_4  76 lplfllGhSmGGliallyllrypd 99 
                  ++++++GhS+GG+ a++++   ++
   CCE29949.1 235 EKIIVYGHSLGGAAAASLARADKR 258
                  489**************9977666 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.014        28       2      38 ..     136     172 ..     135     184 .. 0.88
   2 !   14.8   0.0   9.3e-06     0.019      54      83 ..     232     261 ..     227     268 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.014
  Abhydrolase_5   2 lifYpGakveaesYaelaeklaksGyevvlvklPlnl 38 
                    ++f pG +   + Y   a++la+ Gy v+    Pl+ 
     CCE29949.1 136 VLFTPGLQESRLLYGAGARSLASRGYVVITTDHPLEA 172
                    6788898889999******************999975 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 9.3e-06
  Abhydrolase_5  54 pklekfvvgGhslGGvvasrfaaeeekieg 83 
                     +lek +v GhslGG++a+ +a+ ++++ g
     CCE29949.1 232 MDLEKIIVYGHSLGGAAAASLARADKRVLG 261
                    57899******************9998766 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       1.7   3.4e+03     103     103 ..      64      64 ..       3     136 .. 0.50
   2 !   20.8   0.3   2.4e-07   0.00047      45     134 ..     205     312 ..     136     388 .. 0.54

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.7
                    T CS
  Abhydrolase_6 103 g 103
                    +
     CCE29949.1  64 D 64 
                    1 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 2.4e-07
                    --HHHCHHH...HHHHCCTT.........TTSEEEEEETCHHHHHHHHHHCC....EEEEES-.............----TTT.......S----T CS
  Abhydrolase_6  45 ldledladl...aalldelaa.......gggpvvlvGHSlGGalalaaapla..lvvgvlldp....pp.......talpagl.......laaale 110
                     dl+ + d+   + l ++l +       +  ++++ GHSlGGa a+ +a++   ++ g+ ld+    p+       +     +        +a  +
     CCE29949.1 205 ADLSFVIDQlheSTLMESLLGpylsrsmDLEKIIVYGHSLGGAAAASLARADkrVLGGIDLDGqivePVrslgvdkP-----FllagrqnHSAEDA 295
                    333335555444446666666888899999*************9999777778544448888855432233221111.....11122222222222 PP

                    THHHHHHTT-CCCCHCCHS-HSCC CS
  Abhydrolase_6 111 lllallallrllawlsreplprlf 134
                     + +++++lr        p+ +l 
     CCE29949.1 296 TWNQFWPNLRG-------PRVELA 312
                    22222222222.......222233 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   9.7e-06     0.019      61      82 ..     230     253 ..     174     261 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.7e-06
                 HTT-.EEEEEEEETHHHHHH.HHH CS
    Lipase_3  61 kype.ysivvtGHSLGgalA.lLa 82 
                 +  +  +i+v GHSLGga A +La
  CCE29949.1 230 RSMDlEKIIVYGHSLGGAAAaSLA 253
                 3334357********998761555 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.11   2.2e+02       1      38 [.     134     169 ..     134     170 .. 0.94
   2 ?   11.0   0.0   0.00012      0.24      69     126 ..     231     289 ..     208     312 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.11
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEET CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlr 38 
                    pv+++ +Gl +s  ++ +   a+ La +g+ vi++D++
     CCE29949.1 134 PVVLFTPGLQESRLLYGA--GARSLASRGYVVITTDHP 169
                    799**********99999..9***************96 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00012
                    HCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE.CSSCCHHHHHHHHHHHHHHC CS
  Abhydrolase_1  69 algddkltlvGhSmGGmialayaaeyperVkalvllga.idpaaslieaqrqqaksfpd 126
                    + +++k+++ GhS+GG+ a+ +a   +    ++ l+g  ++p  sl+ ++++ +++ ++
     CCE29949.1 231 SMDLEKIIVYGHSLGGAAAASLARADKRVLGGIDLDGQiVEPVRSLGVDKPFLLAGRQN 289
                    66889************999988765554445555555777777777777766666665 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0036       7.2      45      78 ..     132     165 ..     125     180 .. 0.93
   2 ?    3.9   0.0     0.011        23     116     138 ..     231     253 ..     208     274 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0036
  Chlorophyllase  45 typvvlflhGtllsnkfyskllnhiashGfivva 78 
                     +ypvvlf  G   s   y      +as G++v++
      CCE29949.1 132 KYPVVLFTPGLQESRLLYGAGARSLASRGYVVIT 165
                     6*******************************97 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.011
  Chlorophyllase 116 eanlsklalvGhsrGGktafala 138
                       +l+k+ + Ghs GG +a +la
      CCE29949.1 231 SMDLEKIIVYGHSLGGAAAASLA 253
                     5689************9998887 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00013      0.26      76     113 ..     220     257 ..     133     265 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
       PGAP1  76 IkyIlslysssekeptsviliGHSmGGivaraaltlkn 113
                 ++ +l  y s++ + +++i+ GHS+GG  a +++  ++
  CCE29949.1 220 MESLLGPYLSRSMDLEKIIVYGHSLGGAAAASLARADK 257
                 455666678899999*************9988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2852.29
//
Query:       CCE29950.1  [L=371]
Description: uncharacterized protein CPUR_03797 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-12   47.2   0.0    3.1e-12   46.8   0.0    1.3  1  GDPD      Glycerophosphoryl diester phosphodiesterase family


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   1.7e-16   3.1e-12       1     255 [.      27     353 ..      27     357 .. 0.68

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 1.7e-16
                 TTTTT.TTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SS.SBSTTTCSCCCH.........................BGGGS-HHHHHTST.. CS
        GDPD   1 HRGas.gnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHD.fnldrttdvagr........................ldvkdltleelkrld.. 71 
                 HRG    ++pE++ es ++ a  Ga ++E+Dv  T+D  +V+ H   +l  tt+   +                          ++d+tl+e k+l   
  CCE29950.1  27 HRGGAcLQFPEHSKESTMAGARMGAGVLECDVTFTRDRQLVCRHSqCDLHTTTN-IVNipdlnakcskpftpaadgkpasakCCTSDITLAEYKTLCak 124
                 7765415789***********************************534554444.4444889999*******************************987 PP

                 ............ECCTTCCCCSCCCSSGCC...B...BHHHHHHH..HHHCCSEEEEEEECCCCCCCHHHHHHTCHHHCCCCCSCHHTT..STTCSCEE CS
        GDPD  72 ............kiakenkaqlsenrvrle...fpfptleevlkk..pqnvglnieikipmlseakeeeelqivkeilksvdeilkkvlkkadkrkvif 153
                             +  ++ + +++ +         +++ l+e +++    ++++  e k p  +  ++  +  +++   + +d +         + +v+ 
  CCE29950.1 125 mdafnasattpkDFLAG-TPAWRTDL---YatcGTLVDLKEHIAMveALGLHHTPELKAPEVPMPFDGDF-THDMFAQQMIDAYK---HAGVPASRVMA 215
                 77776655555422222.24455555...0556************5555555666666666655555555.33333333333333...2345799**** PP

                 EESTHHHHHHHHHTCT.CTEEEEEEHHHHHHC-E..........EECHCCC.CCCCTCCCCHHCCCHCCCEB.CHHHHHHHTT-EEEEBSB-THS.... CS
        GDPD 154 ssfnpdilkllrekqp.klpllflteggteaead.........ssleraak.fakadallgevsavaeglgdpdlVkraksrglvvhvytvnned.... 237
                 +sf++++l++  + +p   +++ l+++ + +            +   + +k  a    +l evs+ +  + +++  ++ak+ gl++ ++ +        
  CCE29950.1 216 QSFEFESLRYWLKHEPaFGETAILLDESADKGSMieavgnlerYA-SEGIKtMAPPMHYLVEVSKNSTMV-PSSYANKAKELGLRLITWSLERSGplal 312
                 **********99999974455555554444444455556333222.233330334455666666666664.7889999999999999998877766777 PP

                 .......................HHHHHHHHCCC-SEEEES CS
        GDPD 238 .......................eeemkrlleagvdgvitD 255
                                           + +++++gv g++ D
  CCE29950.1 313 vhekgdyyyksiqdivtkdgdmyNYVDVLARQVGVVGMFSD 353
                 77666666666666666666666555566666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.74
# Mc/sec: 1507.33
//
Query:       CCE29951.1  [L=210]
Description: uncharacterized protein CPUR_03798 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.018   13.7   2.0      0.022   13.4   2.0    1.1  1  DUF4455   Domain of unknown function (DUF4455)
      0.029   14.1   2.5      0.044   13.5   2.4    1.3  1  DUF4201   Domain of unknown function (DUF4201)
       0.12   12.0   0.4       0.22   11.2   0.4    1.4  1  DUF2312   Uncharacterized protein conserved in bacteria (DUF2
       0.18   12.1   0.6       0.45   10.8   0.4    1.6  2  Utp12     Dip2/Utp12 Family


Domain annotation for each model (and alignments):
>> DUF4455  Domain of unknown function (DUF4455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.0   4.9e-06     0.022     249     322 ..      84     156 ..      82     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-06
     DUF4455 249 slealneqidelhaqflekLreeyeevwqecleeveklkkeLldlkvcseeeaeklvneellplvgklqrkaee 322
                 s++a+ + + e++ ++++++++++e  +q+  e+v  l ++L +  +  e +  +l++e++++ v+ l+r  +e
  CCE29951.1  84 SFSAMQNGHIEAMVKHTNRITKHSEMCCQDLHERVRVLTEKLATGDG-READRFQLLKEQFTQNVEDLKRVESE 156
                 788999999999***********************************.888888999*********99886544 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.4   9.8e-06     0.044      99     145 ..     135     181 ..     101     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.8e-06
     DUF4201  99 elkekeerlaklrkelykvklerdklrkqneklkqqggllrvPaLlk 145
                 + + ++e+ ++  + l +v+ er++l+++n++l++++   + P+L +
  CCE29951.1 135 RFQLLKEQFTQNVEDLKRVESERNRLHQENQDLRESSRSRGSPHLEE 181
                 5556788999999****************************999976 PP

>> DUF2312  Uncharacterized protein conserved in bacteria (DUF2312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   4.9e-05      0.22       2      37 ..     140     175 ..     139     176 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.9e-05
     DUF2312   2 adqLrqfieRiErleeEkkaiaedikdvyaeaKseG 37 
                 ++q+ q++e + r+e+E++ ++++ +d+ +  +s+G
  CCE29951.1 140 KEQFTQNVEDLKRVESERNRLHQENQDLRESSRSRG 175
                 68999***********************99999987 PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4    0.0001      0.45      35     101 ..      94     159 ..      92     161 .. 0.89
   2 ?   -2.0   0.0      0.97   4.3e+03      44      60 ..     186     202 ..     179     206 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
                 HHHHHHH.HTTTTHHHHHHHHHHHHHHHHHHHHHSH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Utp12  35 eflaerlaeksphlelllrwlkallrvHgsylvasps.dlvpaLrslqkslrerlktlskllglnlgr 101
                 e++++ +++ ++h e++++ l++ +rv +  l++  + ++ ++++ l++++++ +++l+++ ++  +r
  CCE29951.1  94 EAMVKHTNRITKHSEMCCQDLHERVRVLTEKLATGDGrEA-DRFQLLKEQFTQNVEDLKRVESER-NR 159
                 78888899999**********************9988667.9****************9986665.55 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.97
                 TTTTHHHHHHHHHHHHH CS
       Utp12  44 ksphlelllrwlkallr 60 
                 ++p+ + l  w+ a+lr
  CCE29951.1 186 NPPKYRILSDWITACLR 202
                 67889999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1191  (0.0664287); expected 358.6 (0.02)
Passed bias filter:                      731  (0.0407719); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1526.82
//
Query:       CCE29952.1  [L=120]
Description: uncharacterized protein CPUR_03799 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 933.77
//
Query:       CCE29953.1  [L=388]
Description: uncharacterized protein CPUR_03800 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-63  214.1   0.0    4.2e-63  213.9   0.0    1.0  1  Glyco_hydro_18  Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.9   0.0   2.3e-67   4.2e-63       1     312 []      24     362 ..      24     362 .. 0.86

  Alignments for each domain:
  == domain 1  score: 213.9 bits;  conditional E-value: 2.3e-67
                     EEEEEEEGGGGGSS.GCSHTTTESEEEEEEEEEEETTTEEEESS.TTHHHHHHHHHHHHHHTSTT-EEEEEEEETTTTTHHHHHHTSHHHHHHHH CS
                     xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   1 rvvgYysswesygn.nylpsaklthiiyaFakidgengkvvvsd.wedlgnfeqlkklkkkknpgvkvllsiGGwtdssgfslaastdasrkkfa 93 
                     r+v+Y++  +++   n+  ++ ++h+++aF++ d      ++++ + ++  f ++ k +++++ +vk++++iGGw+ds gf++a  ++asrk++ 
      CCE29953.1  24 RCVMYLTGQHTDVPpNASTQQDISHVVLAFMGSDV----FNTEEaEPEYPLFTTIGKTRQQFHADVKIMVAIGGWGDSLGFEKACRDEASRKRWC 114
                     689****999996545444************5533....445556667799******************************************** PP

                     HHHHHHHHHCT-SEEEEEES-TTTS............TCHHHHHHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSHHHHHHH..CHHHHHHHHTS CS
                     xxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
  Glyco_hydro_18  94 dsvvsllrkygfDGiDidweypggn............pedkenytallkelrealdkakategkkllLsaavpasasdlskg..ydlpkiakylD 174
                     ++v+ ++++ g DG+Didweypggn            + + e++ +ll++lr+a++       k+++Ls+avp+ ++dl+++    +p i k +D
      CCE29953.1 115 NNVKHMIDTTGADGVDIDWEYPGGNrddyklipnkerEWEIEAFAQLLTDLRKAIG-------KQKVLSIAVPGLERDLMAFtaSTVPRIVKQVD 202
                     *************************666666665555444*************665.......789************7777779********** PP

                     EEEEETTTSSSTTSSBE--SS-SSBTCSSHHHHHHHHHHTT--GGGEEEEEESEEEEEEESSSSSS............................T CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................x RF
  Glyco_hydro_18 175 yvnvmtYDfhgswdnvtghhaplydaslnvdeavkeylkagvpakklvlGvpfygrawalvsgadn............................t 241
                     ++n+mtYD+ +++d+v++hh+ +      + ++++ y+++gvpa+ ++lG+++y +++ ++++                                
      CCE29953.1 203 FINIMTYDLLNRRDTVVKHHSGV----AASLASIRRYMERGVPAEMINLGLAYYVKWAMTQKD--CdpdqplgcptqlledpdtgadlgktaafS 291
                     ***********************....99999**********************998877766..223566666667777777788888544443 PP

                     STTTEEEHHHHHHHHTEEEEEEEEETTTTEEEEEETT.EEEEE-SHHHHHHHH.HHHHHTTESEEEEETGGGS CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 242 keegvlsykelkellkkakakrkydskakapyvydge.efvsyDdpksikaka.dyvkakglgGvmiWsldqD 312
                     + ++v   +elk++l +a+++++y ++   +y+ d+e  ++++D+++ i  k+ ++v   +lgGv++W l++D
      CCE29953.1 292 WHDDV--PDELKASLARATSEGRYFEDGSYGYLDDEEqRWWTFDTERVIELKMnRIVAPLRLGGVFAWGLGED 362
                     33222..3467777799***************96666*********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2854.03
//
Query:       CCE29954.1  [L=436]
Description: uncharacterized protein CPUR_03801 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-06   27.0   0.0     0.0013   19.0   0.0    3.3  3  ANAPC4_WD40      Anaphase-promoting complex subunit 4 WD40 do
      0.003   16.3   0.0     0.0055   15.4   0.0    1.3  1  Nup160           Nucleoporin Nup120/160
  ------ inclusion threshold ------
       0.07   14.0  14.4        3.3    8.7   0.1    5.6  5  WD40             WD domain, G-beta repeat
      0.087   12.8   0.1       0.57   10.2   0.0    2.4  3  DUF2415          Uncharacterised protein domain (DUF2415)
       0.36    9.1   8.4       0.49    8.6   8.4    1.1  1  CDC45            CDC45-like protein
       0.49   10.3   3.3        1.2    9.1   3.3    1.6  1  Antimicrobial22  Frog antimicrobial peptide
        2.8    7.5   5.7        4.3    7.0   5.7    1.2  1  SURF2            Surfeit locus protein 2 (SURF2)


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.1e-07    0.0013       5      80 ..      21     116 ..      17     129 .. 0.79
   2 ?   -1.7   0.0       1.4   3.7e+03      52      70 ..     134     152 ..     124     163 .. 0.79
   3 ?    3.6   0.0     0.031        80      50      90 ..     287     329 ..     275     331 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.1e-07
  ANAPC4_WD40   5 ptmDLiAlatedgellvfRlng......................qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  pt  L+ ++ ++g+++ fRl                          +w++    ++++ r+La+++dg+ +  a  d+ v+ +d+ +g+v++++ + s
   CCE29954.1  21 PTEPLLTVGLSSGHVETFRLPQsnsseddgdgdnsilsdgrgmiDSLWKT--RRHKGSCRCLAYSHDGQAMFSAGTDSLVKYFDSRNGRVISKIAIPS 116
                  56667777777777777777555566777777766666666555677777..89999***********************************997655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
  ANAPC4_WD40  52 lLavaysdgevrlldaesg 70 
                   L   ++ g+v+++d  +g
   CCE29954.1 134 NLLLTTDSGAVHIIDLREG 152
                  5777889999***999887 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.031
  ANAPC4_WD40  50 gklLavaysdgevrlldaesgkvvhslsvksek..avtclgWg 90 
                  gk  + ++ dg++r++d    +v ++++ k+++  av++lg+ 
   CCE29954.1 287 GKKVVCGMGDGSLRIVDLVRREVDRAINLKHDDmdAVVSLGFD 329
                  778899****************999999988876677777765 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.1e-06    0.0055     136     201 ..     110     178 ..      98     191 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-06
                 BEEB-SSGT.TTS-EEEEEE-SSSEEEEEETTS-EEEEEE...ETTEEEEEEEEE-------B--TTTT CS
      Nup160 136 ckidspsslstsskpgrlaavssnellvsladggllklkr...dedggawkesvfepksfllslsgllg 201
                  ki+ ps  s ++ p +l++ +++ ll+++++g+++++++   +  g++  +++f ++ + +s++ l +
  CCE29954.1 110 SKIAIPSAASAPDAPTLLHVLNPQNLLLTTDSGAVHIIDLregGAPGHKPAQTHFPHSDYVSSITPLPT 178
                 58999***********************************99988899999*********999987765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         3   7.8e+03      16      34 ..      17      35 ..       5      37 .. 0.69
   2 ?    8.7   0.1    0.0013       3.3       8      38 .]      71     102 ..      65     102 .. 0.82
   3 ?   -0.2   1.8      0.85   2.2e+03      22      38 .]     235     251 ..     156     251 .. 0.76
   4 ?    2.9   0.1     0.089   2.3e+02      24      37 ..     289     302 ..     283     303 .. 0.79
   5 ?    7.0   0.0    0.0044        11      12      37 ..     319     345 ..     313     346 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3
                EEEETTSSEEEEE.ETTSEE CS
        WD40 16 lafspdgawlasG.sdDgtv 34
                 a++p  ++l+ G s  g+v
  CCE29954.1 17 TAVHPTEPLLTVGlS-SGHV 35
                345899999877755.6665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0013
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + H +s ++la+s+dg+ ++s++ D  v+ +d
  CCE29954.1  71 RRHkGSCRCLAYSHDGQAMFSAGTDSLVKYFD 102
                 5686669***********998877*9999776 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.85
                 SSEEEEEETTSEEEEEE CS
        WD40  22 gawlasGsdDgtvriWd 38 
                 +  +a Gs  g + iWd
  CCE29954.1 235 NGVVAVGSGSGILTIWD 251
                 33467776688888887 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.089
                 EEEEEETTSEEEEE CS
        WD40  24 wlasGsdDgtvriW 37 
                  +++G+ Dg++ri 
  CCE29954.1 289 KVVCGMGDGSLRIV 302
                 5789956*****95 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0044
                 S...EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 s...vtslafspdgawlasGsdDgtvriW 37 
                 +   v sl f++ ++++ +++  +tv++W
  CCE29954.1 319 DmdaVVSLGFDSQNRLI-TAG-GRTVKVW 345
                 34457788888888887.688.******* PP

>> DUF2415  Uncharacterised protein domain (DUF2415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.2   3.2e+03       1       9 [.      75      83 ..      75      90 .. 0.82
   2 ?   10.2   0.0   0.00022      0.57      19      34 ..     136     151 ..     131     158 .. 0.81
   3 ?   -2.7   0.0       2.2   5.7e+03      17      24 ..     207     214 ..     201     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
     DUF2415  1 GAfRvckFS 9 
                G+ R++++S
  CCE29954.1 75 GSCRCLAYS 83
                899****99 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00022
     DUF2415  19 visEhvgrvHlvDlRt 34 
                 + + ++g vH++DlR+
  CCE29954.1 136 LLTTDSGAVHIIDLRE 151
                 456699*********7 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.2
     DUF2415  17 LLvisEhv 24 
                  Lv sE++
  CCE29954.1 207 VLVCSEDQ 214
                 58999997 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   8.4   0.00019      0.49     123     198 ..     345     418 ..     313     424 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00019
       CDC45 123 yealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrk..sksdeeeesddddersrkrrrsepsa 198
                 +e+l+  + + e+   ++++dd +e+++ + ++++++  +d++    ++   ++sd+++ ++d++ r+r +rr+e ++
  CCE29954.1 345 WEELSALQGDGES---QSDDDDAHEDDDGKPSDNRKRPADDGSG-VAEDDygEDSDDSDGDKDQEMRQRAKRRKEVQK 418
                 5555555544322...2222333333333332222222223222.222222344444444666777777777776333 PP

>> Antimicrobial22  Frog antimicrobial peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.3   0.00047       1.2       8      16 ..     285     293 ..     284     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00047
  Antimicrobial22   8 GaGKkivCG 16 
                      G GKk+vCG
       CCE29954.1 285 GLGKKVVCG 293
                      99******* PP

>> SURF2  Surfeit locus protein 2 (SURF2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.7    0.0017       4.3     142     222 ..     340     420 ..     303     426 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0017
       SURF2 142 kkesfwepss..sdeeasdsddsmsdlypdelFtekpvgkrededdkedfetdeeeeeakvsde.ekeemeveksklqkrkklq 222
                 ++ + we++s  +++ +s+sdd+++   +d    ++++++++  dd++    d+  e+++ sd+ +++em+   ++++ ++k++
  CCE29954.1 340 RTVKVWEELSalQGDGESQSDDDDAHEDDD---GKPSDNRKRPADDGSGVAEDDYGEDSDDSDGdKDQEMRQRAKRRKEVQKSK 420
                 566889999965577778888888877776...466666666667777666666666566666634444444334444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3216.70
//
Query:       CCE29955.1  [L=315]
Description: related to maleylacetate reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-17   64.0   0.0    1.5e-12   47.0   0.0    2.2  2  Fe-ADH    Iron-containing alcohol dehydrogenase
  ------ inclusion threshold ------
      0.013   15.2   0.2       0.04   13.6   0.1    1.8  2  Fe-ADH_2  Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.7e-16   1.5e-12       3     141 ..      89     201 ..      88     212 .. 0.91
   2 !   14.7   0.0   1.1e-06      0.01     151     194 ..     254     297 ..     245     308 .. 0.84

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.7e-16
                 EEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHHHH CS
      Fe-ADH   3 rivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKaia 101
                 riv+g+g+++ l+++l++l ++ +liv +++ +   +l++ +++ +   +++  + d    n + + v++a++++ +   dvvi+vGG s++ +A ai 
  CCE29955.1  89 RIVYGRGKIHCLPTELARLCVSAPLIVSSPSRI---PLARCIQAII--PNLNSRILDSAVVNVPAHVVDDAVSRIDDR--DVVISVGGASAVGLAGAIG 180
                 9******************************77...4554455555..88899999*****************88877..9****************** PP

                 HHTT..................--EEEEESS-S-S-TT-S CS
      Fe-ADH 102 lllanpevedylgegkakkkkalpliaiPTtaGtGsevtp 141
                    +                  +p+i+iPTt  +Gse+ p
  CCE29955.1 181 CRKN------------------IPHICIPTTY-SGSEMMP 201
                 ***9..................**********.9***977 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.1e-06
                 SEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHH CS
      Fe-ADH 151 geklsifdpellPdlaivDpeltltlPkrvtaatglDalahalE 194
                  + +s++dp++lP+++i+D +lt + P r+ a +   a+a  +E
  CCE29955.1 254 SRTTSFRDPRVLPSVIIYDEDLTTSIPTRLSAPSNETAMARSVE 297
                 47789*************************99887777777666 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   4.4e-06      0.04      67     110 ..     154     195 ..     123     217 .. 0.84
   2 ?   -1.4   0.0      0.17   1.5e+03     126     155 ..     255     285 ..     245     304 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-06
    Fe-ADH_2  67 lvealreketdlvvavGgGtiiDiakyvsaklnvpyvsvpTaaS 110
                  v+  r ++ d+v++vGg +++ +a  +  ++n+p + +pT+ S
  CCE29955.1 154 AVS--RIDDRDVVISVGGASAVGLAGAIGCRKNIPHICIPTTYS 195
                 333..34799*******************************988 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.17
    Fe-ADH_2 126 kkrtv.akaaaPlaviaDldvlaeAPrrlla 155
                 +++++  +  +P  +i D d+ +  P rl a
  CCE29955.1 255 RTTSFrDPRVLPSVIIYDEDLTTSIPTRLSA 285
                 4455677888999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2475.73
//
Query:       CCE29956.1  [L=318]
Description: uncharacterized protein CPUR_03803 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0078   17.2   0.3      0.014   16.3   0.3    1.4  1  Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3     8e-07     0.014       2      87 ..      19     105 ..      18     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8e-07
  Myb_DNA-bind_3   2 Wspeeekilvdllveqvkkgnriekktfkkeawkeileefna.ktgak.ytkkqlknrlkklrkeyklvkellersgfsWDpttktvt 87 
                     Ws++e  +++  l e  ++g + +++t+   + k++   +++ + + + +  + l+ ++ ++r+++++ +++++ +g +W+++t+ ++
      CCE29956.1  19 WSNAEVFTFLGFLNEA-RNGRTFQNNTLIAPTLKKASGFMREkFPQRNwKPDSTLRAQFYRIRDDWRVFQDVFDAPGTEWNKETSSFR 105
                     7777777777766555.777777899999999999888888843333314567899****************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2336.61
//
Query:       CCE29957.1  [L=584]
Description: probable uric acid-xanthine permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-58  198.2  29.0    4.2e-39  134.4  15.7    2.1  2  Xan_ur_permease  Permease family
  ------ inclusion threshold ------
       0.25   11.4   1.0         36    4.5   0.0    3.6  3  NDUF_B12         NADH-ubiquinone oxidoreductase B12 subunit f


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   5.4     2e-23   1.8e-19       4     148 ..      81     250 ..      80     271 .. 0.88
   2 !  134.4  15.7   4.7e-43   4.2e-39     153     387 ..     277     512 ..     266     514 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 2e-23
                      HHHHHHHHHHHHHHHHHHHHTTTS-............H.HHHHHHHHHHHHHHHH.........HTTT-----EEE-GGGHH....HHHGGG-. CS
  Xan_ur_permease   4 lllglQhllamfaalvvvPllvgda..lgl.aeelrqlisatllasGiatllqll.........ifgirlpillgssfafvt....almialGs 81 
                      +llglQh lam+a+++++Pl+++    ++l +++ ++l+s++l++sG+ + +q+          ++g+++ ++ g+sf  ++    a       
       CCE29957.1  81 MLLGLQHSLAMLAGIITPPLILSGTggANLeSAQQQYLVSTALIVSGLLSSMQISrfripktnyFIGTGILSVVGISFSIIPiaqgA------- 167
                      789*******************99976666667777******************999*************************55554....... PP

                      ....................HHHHHHHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-. CS
  Xan_ur_permease  82 a.................edieialagllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwa 148
                      +                      ++++l+g+  + +++ ilis++  +  l +++pP+vtgp+v+liG  l+  ++k+ +gg  
       CCE29957.1 168 FkqmyangscpsdsrgnpLPCPRGYGALIGTSSICALVEILISFLPPK-ILLKMFPPIVTGPTVMLIGVHLIGSGFKDWMGGSG 250
                      3344455688*****9997899*************************5.****************************9999864 PP

  == domain 2  score: 134.4 bits;  conditional E-value: 4.7e-43
                      .B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHHHTTSSHHHHS-SS-----------HH..H.HHHHTHHH.HHHHH CS
  Xan_ur_permease 153 ltvvslkllllavvvllvilllsvflkglfsqlpiLigiiagwllalfmgivnlspevseapwfqlpsplkfgtplfnlgliltvlavalvavv 246
                      l+ +s+++l+l+++  ++i+l+ +f ++++++ ++++g+++g+++a+++g ++ s+ +++ap +++   ++ ++ ++  +l+l ++av+++  +
       CCE29957.1 277 LPWGSPEYLGLGFAAFITIILCERFGSPIVKSTSVVWGLLVGCIIAAACGYFDRSG-IDSAPIVSFI-WVHTFPLTLYGPLVLPIMAVFVICAT 368
                      6788999*************************************************.*****99996.445555558999************** PP

                      HHHHHHHHHHHHHTS-TII...IIIHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-H CS
  Xan_ur_permease 247 esvGdiravakvvgrslkp...kpdlrralladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPe 337
                      e+vGdi+a+ +v+  +l++   +++++ +ll+dGl+ ++++++  +p++ +a+n+Gv+alt+ a+r+ ++    +li++g++ k+aa l +IP+
       CCE29957.1 369 EAVGDITATCDVSHMELQGpiyESRIQGGLLTDGLNGIVAAMMTMTPMSRFAQNNGVIALTRCANRKAGLACCFFLIVMGIFAKFAAALVAIPS 462
                      *****************99999************************************************************************ PP

                      HHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHH----- CS
  Xan_ur_permease 338 pvlgGvllvvfgmiaasgvsnlqtvdldsarnllivavslvlGlgvatvp 387
                      pvlgG+++ +f  + +sg++++++ +  ++r  +i+   l+lG g++ vp
       CCE29957.1 463 PVLGGMTTFLFTAVTVSGMAIISRGTSFDRRTRFILTAGLALGYGATLVP 512
                      ************************99888**************9998876 PP

>> NDUF_B12  NADH-ubiquinone oxidoreductase B12 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.004        36      30      47 ..     285     302 ..     284     310 .. 0.86
   2 ?    3.0   0.0     0.012     1e+02      15      50 ..     489     522 ..     486     529 .. 0.78
   3 ?   -0.9   0.1      0.19   1.7e+03      30      48 ..     539     557 ..     525     563 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.004
    NDUF_B12  30 fglavaafaaavgyEhfl 47 
                 +gl++aaf+ +++ E f 
  CCE29957.1 285 LGLGFAAFITIILCERFG 302
                 799************994 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.012
    NDUF_B12  15 qfskakrfkraffpGfglavaafaaavgyEhflgsk 50 
                  f ++ rf+ +   G+ l+ +a+++    + ++  +
  CCE29957.1 489 SFDRRTRFILTA--GLALGYGATLVPTYFDRIFSYS 522
                 577888888866..**********999998887544 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.19
    NDUF_B12  30 fglavaafaaavgyEhflg 48 
                 + +++a++aa++++ ++++
  CCE29957.1 539 METGFAVTAAICMILNLVL 557
                 3789999999998766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 4134.60
//
Query:       CCE29958.1  [L=686]
Description: uncharacterized protein CPUR_03805 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-11   44.8   0.1    1.2e-11   44.8   0.1    2.0  2  mRNA_triPase    mRNA capping enzyme, beta chain


Domain annotation for each model (and alignments):
>> mRNA_triPase  mRNA capping enzyme, beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.9   7.6         1   1.8e+04      64     111 ..      35      81 ..      22      97 .. 0.50
   2 !   44.8   0.1   6.4e-16   1.2e-11       2      70 ..     603     676 ..     602     682 .. 0.94

  Alignments for each domain:
  == domain 1  score: -7.9 bits;  conditional E-value: 1
                   EE-B-HHHHHHHHHHHHHHHH..HTTCCCTTTEEEEEEEEEEEEEE-S CS
  mRNA_triPase  64 esgvdedqfkelnnfLnelsrrneeenskrekvslkeskevDkfYelk 111
                   es+v+++q  + ++ L++ + + +++++ ++  +l++++++ +  +l+
    CCE29958.1  35 ESQVQQQQQLQRQQQLQQQQ-QLQQQQQLQQQQQLQQQQQIQQQQQLQ 81 
                   45555544444444444422.334444444444444444444444444 PP

  == domain 2  score: 44.8 bits;  conditional E-value: 6.4e-16
                   -HHHHHHHHHHHHHHHH......CTCCGGCCEEEEEEEEEEEETTTSSB---SBSS-EEE-TTCTEEEEE-B-HH CS
  mRNA_triPase   2 deitksvsdwiiaaldn......iksekrsqiEiEaklGlivdkstkeRlklpvsteaivennadskfesgvded 70 
                   +ei k+v+d+i+ +++n      i+s++  q+EiEaklG+++dk+t+ R++    te+++++n ++ f+s+++e+
    CCE29958.1 603 EEISKTVADFIFIHVVNnpdikeINSRG-IQFEIEAKLGTLIDKDTNCRVDRLLDTECVLHDNGRVAFRSSMTEV 676
                   7899************99**99888887.9*******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3927  (0.219031); expected 358.6 (0.02)
Passed bias filter:                      910  (0.0507558); expected 358.6 (0.02)
Passed Vit filter:                       360  (0.0200792); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.48u 0.37s 00:00:01.85 Elapsed: 00:00:00.56
# Mc/sec: 3688.35
//
Query:       CCE29959.1  [L=1133]
Description: probable RPN2-26S proteasome regulatory subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-39  135.2  11.2      5e-38  130.5  11.2    2.4  1  RPN2_C      26S proteasome regulatory subunit RPN2 C-terminal
    1.4e-38  129.4  19.6    1.1e-08   35.0   0.0    8.3  8  PC_rep      Proteasome/cyclosome repeat
    2.5e-22   79.1   0.0    9.1e-15   54.8   0.0    5.6  5  HEAT_2      HEAT repeats
    4.4e-06   26.5   1.1        1.5    9.3   0.0    6.1  6  HEAT        HEAT repeat
    5.5e-06   26.8   0.1      0.001   19.5   0.0    4.4  4  HEAT_EZ     HEAT-like repeat
  ------ inclusion threshold ------
      0.019   15.0   0.0        4.7    7.2   0.0    3.1  2  Cnd1        non-SMC mitotic condensation complex subunit 1
        3.1    6.5   7.5        5.1    5.7   7.5    1.2  1  Raftlin     Raftlin
        5.2    5.7   6.7          9    5.0   6.7    1.3  1  NPR3        Nitrogen Permease regulator of amino acid transpo


Domain annotation for each model (and alignments):
>> RPN2_C  26S proteasome regulatory subunit RPN2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5  11.2   2.2e-41     5e-38       1     159 [.     867    1030 ..     867    1031 .. 0.88

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 2.2e-41
                  -BEEEEETTTBEE--EEEEES-TTTTSSS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG...........--------------------- CS
      RPN2_C    1 TaiIglnkdLkiPkfefksnakpslFaYPpeleekkekekekvatAvLSttakakarakkkekek..........eeeekeedkmdvdeekeekekk 87  
                  TaiIgl++dL+iP+++f++++++slF+YPpe+e+k  + ++ +atA+LStta+ak+ra++ke+++            ++ ++dkmd+de+ke+++k+
  CCE29959.1  867 TAIIGLDNDLEIPDIKFQCATRQSLFDYPPEQEVKVAEGPAMIATAILSTTAQAKRRAQRKERAQkresmdidstGPTDPKSDKMDIDEDKEKDKKR 963 
                  9**************************************************************999*******996778999******988888777 PP

                  -----------..........--SS----SSEEEEESSSB--TTCCTTEEE-SSSSEEESSS-SSSSEEEEEESSTSSSSSE CS
      RPN2_C   88 ekekkekekee..........ekkkkekektfekleNpaRVlpaQlkyisfkkdsrYkpvkkkgtgGivllkdkkpeeeeel 159 
                  e+e++++ek+e          +kkk ekek ++++ N++RV+p+Qlk+               +tgG +ll+d++p+++++l
  CCE29959.1  964 EEETAKAEKKEsdekesslseAKKKLEKEKIGYEIGNLTRVVPSQLKF---------------PTGGPLLLDDSQPDQPKSL 1030
                  777777666667788999*999999********************985...............4556666666666666655 PP

>> PC_rep  Proteasome/cyclosome repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         8   1.8e+04      15      32 ..     312     329 ..     310     331 .. 0.78
   2 !   16.7   0.0   3.2e-06    0.0071       2      27 ..     483     507 ..     482     510 .. 0.94
   3 !   26.7   0.2   2.2e-09     5e-06       1      34 [.     522     554 ..     522     555 .. 0.95
   4 !   15.0   0.3   1.1e-05     0.026       1      32 [.     557     588 ..     557     591 .. 0.92
   5 !   17.2   0.1   2.2e-06     0.005       5      32 ..     596     623 ..     594     625 .. 0.95
   6 !    9.1   0.0   0.00082       1.8       8      34 ..     669     696 ..     669     697 .. 0.89
   7 !   35.0   0.0     5e-12   1.1e-08       1      35 []     732     766 ..     732     766 .. 0.97
   8 !   15.5   1.8     8e-06     0.018       1      23 [.     810     831 ..     810     836 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 8
                 CHHHHHHHHHHHHHHSSH CS
      PC_rep  15 neeaislLkpylsdtsae 32 
                 n+ea  +L++++++ + +
  CCE29959.1 312 NDEASRMLRTLITNGDRT 329
                 778999999999887765 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 3.2e-06
                 HHHHHHHHCTTSTCHHHHHHHHHHHH CS
      PC_rep   2 AllALGlihaGsgneeaislLkpyls 27 
                 A++ALG+ih G+ ++  ++lL+pyl+
  CCE29959.1 483 ATAALGVIHRGNLSQ-SRKLLEPYLP 507
                 99*********9999.********97 PP

  == domain 3  score: 26.7 bits;  conditional E-value: 2.2e-09
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHHSSHHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdtsaevr 34 
                 GAl+A Gliha++g + a+++Lk++l   ++ev+
  CCE29959.1 522 GALYAYGLIHANHGAD-ALDYLKDQLVQAEDEVI 554
                 9***************.**********9999987 PP

  == domain 4  score: 15.0 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHHSSH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdtsae 32 
                 G +l+LG++++ +g++ ++  Lk++l  +sa 
  CCE29959.1 557 GGALGLGIAGMATGDSQVFGKLKDILFQDSAL 588
                 789***********************999986 PP

  == domain 5  score: 17.2 bits;  conditional E-value: 2.2e-06
                 HHHHHCTTSTCHHHHHHHHHHHHHHSSH CS
      PC_rep   5 ALGlihaGsgneeaislLkpylsdtsae 32 
                 ++Gli++G+gn  a++ + +y+++t++e
  CCE29959.1 596 SMGLIMLGTGNVKALEDMINYAHETTHE 623
                 79***********************986 PP

  == domain 6  score: 9.1 bits;  conditional E-value: 0.00082
                 HHCTTSTCH.HHHHHHHHHHHHHSSHHH CS
      PC_rep   8 lihaGsgne.eaislLkpylsdtsaevr 34 
                 ++++G+g++ ++++lL++ +sd +++vr
  CCE29959.1 669 MAYCGTGSNkAIRKLLHTAVSDVNDDVR 696
                 69*******9999999999999998887 PP

  == domain 7  score: 35.0 bits;  conditional E-value: 5e-12
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHHSSHHHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdtsaevra 35 
                 G+++ALG+ +aG+g +eai+lL+p+++d++++vr+
  CCE29959.1 732 GSAMALGISCAGTGLDEAIDLLEPMMKDPTDFVRQ 766
                 89*****************************9985 PP

  == domain 8  score: 15.5 bits;  conditional E-value: 8e-06
                 HHHHHHHHHCTTSTCHHHHHHHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLk 23 
                 GA+l+LG+i+aG g++ +i l  
  CCE29959.1 810 GAALGLGIIDAG-GRNCTIGLQT 831
                 9***********.***9998866 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.11   2.4e+02       4      57 ..      10      68 ..       7      79 .. 0.73
   2 ?    0.7   0.0      0.32   7.2e+02      30      71 ..     536     582 ..     523     589 .. 0.68
   3 !   11.0   0.0   0.00019      0.42      28      81 ..     605     661 ..     595     668 .. 0.84
   4 !   54.8   0.0     4e-18   9.1e-15       3      87 ..     682     772 ..     680     773 .. 0.89
   5 ?    1.5   0.0      0.18     4e+02      30      59 ..     788     819 ..     781     826 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
      HEAT_2  4 LlqalendpdpevrraairaLg......rignpealpaLvellededpavRraaaeaLga 57
                 l++l  d++pe+++ a+++L       +    ++l  +  l ed+    R  aa  L++
  CCE29959.1 10 VLAFL-ADEEPELKIFALQTLNddidtvWTEVASSLSQIEALYEDDTFPERPLAALVLAK 68
                57889.8999*******9999964444333334777777777777777777777777766 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.32
      HEAT_2  30 pealpaLvell.ededpavRraaaeaLg....aigdpealpaLkell 71 
                  +al++L + l + ed+ +++  a  Lg    a gd+++   Lk++l
  CCE29959.1 536 ADALDYLKDQLvQAEDEVIQHGGALGLGiagmATGDSQVFGKLKDIL 582
                 47888888855488999999999988884333445677766666655 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00019
      HEAT_2  28 gnpealpaLvell.ededpavRraaae..aLgaigdpealpaLkellddddddvvRe 81 
                 gn +al+ +++++ e++++++ r +a   aL  +g++e +++L e l++d+d+  R 
  CCE29959.1 605 GNVKALEDMINYAhETTHERIVRGVALgmALIMFGRQEGADVLIEGLLNDPDATLRY 661
                 6778999******999**********83355577******************99885 PP

  == domain 4  score: 54.8 bits;  conditional E-value: 4e-18
      HEAT_2   3 aLlqalendpdpevrraairaLg..rignpealpaLvell.ededpavRraaaeaLgai....gdpealpaLkellddddddvvReaAaeaL 87 
                 +Ll  +++d +++vrr a+++Lg   ++ p+++p +vell e+ +p+vR+  a+aLg      g++ea+++L+ +++d++ d+vR+ A++aL
  CCE29959.1 682 KLLHTAVSDVNDDVRRVAVMSLGfiLFRKPSSVPRMVELLsESYNPHVRYGSAMALGIScagtGLDEAIDLLEPMMKDPT-DFVRQGALIAL 772
                 6888888****************9999*************889**************77665579***********8765.67799999998 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.18
      HEAT_2  30 pealpaLvell..ededpavRraaaeaLgaig 59 
                 p++++ L++++  ++ed+++   aa  Lg i+
  CCE29959.1 788 PSVRKNLRRVVgdRHEDAMTKFGAALGLGIID 819
                 688999*****6666999***********985 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.87   1.9e+03       6      25 ..      11      30 ..       9      31 .. 0.86
   2 ?   -0.5   0.2      0.93   2.1e+03       1      14 [.     283     297 ..     283     300 .. 0.87
   3 ?    0.8   0.0      0.36     8e+02       5      18 ..     648     661 ..     645     667 .. 0.79
   4 !    5.9   0.0    0.0083        19       9      27 ..     688     706 ..     680     708 .. 0.82
   5 ?    0.9   0.0      0.33   7.4e+02       3      25 ..     715     738 ..     714     742 .. 0.77
   6 !    9.3   0.0   0.00068       1.5       2      27 ..     750     775 ..     749     778 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.87
                HHHHT-SSHHHHHHHHHHHH CS
        HEAT  6 lkllsDpspeVReaAakaLg 25
                l  l D++pe    A+++L 
  CCE29959.1 11 LAFLADEEPELKIFALQTLN 30
                66789***********9996 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.93
                 HHHHHHHHHT-.SSH CS
        HEAT   1 llPlllkllsD.psp 14 
                 +l l+l ll+D p+p
  CCE29959.1 283 ILRLILDLLNDiPNP 297
                 799********8877 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.36
                 HHHHHT-SSHHHHH CS
        HEAT   5 llkllsDpspeVRe 18 
                 +  ll+Dp++  R+
  CCE29959.1 648 IEGLLNDPDATLRY 661
                 55667****99886 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0083
                 HT-SSHHHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLgal 27 
                  sD + +VR+ A+ +Lg +
  CCE29959.1 688 VSDVNDDVRRVAVMSLGFI 706
                 59**************966 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.33
                 HHHHHHH.T-SSHHHHHHHHHHHH CS
        HEAT   3 Plllkll.sDpspeVReaAakaLg 25 
                 P +++ll ++ +p+VR+ +a aLg
  CCE29959.1 715 PRMVELLsESYNPHVRYGSAMALG 738
                 56666665555899********98 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.00068
                 HHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgal 27 
                 ++ll  +++Dp  +VR+ A+ aL  +
  CCE29959.1 750 IDLLEPMMKDPTDFVRQGALIALSMI 775
                 678999*****************987 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.8   1.3e+04      20      36 ..     253     269 ..     250     272 .. 0.79
   2 ?   -2.1   0.0       2.7     6e+03      35      46 ..     650     661 ..     645     662 .. 0.62
   3 !    6.3   0.0    0.0064        14      28      53 ..     712     738 ..     693     739 .. 0.85
   4 !   19.5   0.0   4.7e-07     0.001       1      53 [.     727     773 ..     727     775 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.8
     HEAT_EZ  20 ellqplvpeilpaLlal 36 
                 +++q+ v+e++ + l  
  CCE29959.1 253 DDVQGPVEELMEYILGI 269
                 89999******998855 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.7
     HEAT_EZ  35 alLnddsdeVRa 46 
                  lLnd++++ R+
  CCE29959.1 650 GLLNDPDATLRY 661
                 456777777786 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0064
     HEAT_EZ  28 eilpaLlalL.nddsdeVRaaAagaLg 53 
                   +p ++ lL ++ +++VR+ +a aLg
  CCE29959.1 712 SSVPRMVELLsESYNPHVRYGSAMALG 738
                 4689999999999*************8 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 4.7e-07
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 + vR + a+aLG   ++++  l     e++++L ++++d+ d VR+ A++aL+
  CCE29959.1 727 PHVRYGSAMALGI--SCAGTGLD----EAIDLLEPMMKDPTDFVRQGALIALS 773
                 5799999*****5..33466666....*************************8 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.019        42      24      49 ..     682     707 ..     648     727 .. 0.68
   2 ?    7.2   0.0    0.0021       4.7       8      52 ..     735     780 ..     728     809 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.019
        Cnd1  24 epLrkrLkDedpyVRktaaivvakLi 49 
                 + L+++++D +  VR+ a++ +  ++
  CCE29959.1 682 KLLHTAVSDVNDDVRRVAVMSLGFIL 707
                 45667777777777777777766554 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0021
        Cnd1   8 rtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakL.ilnd 52 
                 ++lg  +  + +++ ++ L+  +kD+   VR+ a+i+++ + i+++
  CCE29959.1 735 MALGISCAGTGLDEAIDLLEPMMKDPTDFVRQGALIALSMIlIQQN 780
                 5667777777789999999999999999999999999998874433 PP

>> Raftlin  Raftlin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.5    0.0023       5.1     174     260 ..     905     990 ..     895    1005 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0023
     Raftlin 174 sssltsgaaese..eardekkkrsssedkvslenekpgalsgksseagaeeeaeseegkkgegpaaeqlqlssaeeegsespskskkge 260
                 + ++  +a  s+  +a+ + +++++++++ s++ +++g ++ ks + +++e+ e+ +++++e+ +ae++++ ++e++ se +   kk e
  CCE29959.1 905 GPAMIATAILSTtaQAKRRAQRKERAQKRESMDIDSTGPTDPKSDKMDIDEDKEKDKKREEETAKAEKKESDEKESSLSEAK---KKLE 990
                 5554444433331145555566666778888999999*******************99999999999999444444444444...3333 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.7     0.004         9      45     117 ..     922     981 ..     906    1030 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.004
        NPR3  45 rkskkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeeeeeededdeesek 117
                 r+ ++k++++kr++   +++  ++ +s+k + ++++e++++++++ ++              e++e+de++++
  CCE29959.1 922 RRAQRKERAQKRESMDIDSTGPTDPKSDKMDIDEDKEKDKKREEETAK-------------AEKKESDEKESS 981
                 222222233333333333333322222222222222222111111111.............111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1599  (0.0891851); expected 358.6 (0.02)
Passed bias filter:                      850  (0.0474092); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.14u 0.29s 00:00:01.43 Elapsed: 00:00:00.47
# Mc/sec: 7256.42
//
Query:       CCE29960.1  [L=659]
Description: related to nitrate reductase [NADPH] [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-54  183.2   0.0    4.4e-54  182.7   0.0    1.2  1  Oxidored_molyb  Oxidoreductase molybdopterin binding domain
    4.3e-26   91.6   0.4    2.3e-15   56.8   0.1    2.9  2  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain
    9.8e-12   44.9   0.1    1.8e-11   44.0   0.1    1.5  1  Cyt-b5          Cytochrome b5-like Heme/Steroid binding domai
  ------ inclusion threshold ------
       0.23   10.5   0.1        0.4    9.8   0.1    1.2  1  DUF3086         Protein of unknown function (DUF3086)


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.7   0.0   9.8e-58   4.4e-54       1     172 []     269     450 ..     269     450 .. 0.90

  Alignments for each domain:
  == domain 1  score: 182.7 bits;  conditional E-value: 9.8e-58
                     SS----.G...CCC-EEEEESTCSSEEEEEHHHHHH.C-EEEEEEEEE-TTTTHHHHC.HH..--SS----TTSEEEEEEEEEEHHHHHHHTTB- CS
  Oxidored_molyb   1 hgavpkvd...pekwrlevdglvekplslslddLka.lpavevtatlqCagnrrkeln.kk..kvkglqwgagavsnaeWtGvrlrdvLekagvk 88 
                     h++vp+v+    e++ l+++    + ++++l+dLk+ +p ++vta+lqC+gnrr+++n  +  k++gl w+aga+sna W+Gv+l+d+L++ag++
      CCE29960.1 269 HMWVPSVQanaSEDHCLTIELVDGTMKEYTLRDLKTkFPPRKVTAVLQCSGNRRSHMNlDSgrKTNGLPWQAGAISNASWEGVLLSDLLADAGLD 363
                     7788855423367******987777778*******99*********************76699*******************************9 PP

                     ........ETT..EEEEEEEEE-TCCTEEEEEEEHHHHCTT..T-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEESS---SHH CS
  Oxidored_molyb  89 ........kpearhvvfegadeeleeskygasiplekaled..dvlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsdeesegyw 172
                               +++hv+f g++      +ygasip++ka++   dvlLAy mn+epLp+dhG+PlR++vpg+v+arsvKwl+++++sdees+++w
      CCE29960.1 364 lnearkglG-DTKHVQFMGME------AYGASIPIKKAVDPlgDVLLAYSMNDEPLPRDHGFPLRAIVPGYVAARSVKWLNHVTLSDEESPSQW 450
                     665555531.45*******97......6***********54779************************************************99 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.1   5.1e-19   2.3e-15       3      95 ..     472     585 ..     470     603 .. 0.72
   2 !   31.6   0.0   3.2e-11   1.4e-07      96     136 ..     606     648 ..     596     650 .. 0.88

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 5.1e-19
                  ---S---EEEE-SS-SEEEE-S......................EEEEEEEEEE-STT--EEEEEEESSTTSS-EE-EEESSSSS---..SS..TTS- CS
  Mo-co_dimer   3 aiydlnvnsvicspeheekvklkea..................eetytikGyaysGgGrritrvevsldkGksWklaeieyeedkereakee..sret 80 
                  ai++++v+s+i+s +  +  k +++                  e+++ + Gya+sGgGr i+rv+vsld+G+sW  a+i  +    +++k +  + + 
   CCE29960.1 472 AIQEMPVQSAITSLQLGKWTKPSAEphvlknsdainspsqstpEQEIIMAGYAFSGGGRSIVRVDVSLDGGTSWDQAHILPDCAT-KNGKPSpcQGNG 568
                  7888888888876444333333332333333335777777888899*********************************877554.444444458889 PP

                  TTS-EEEEEE..EEESS CS
  Mo-co_dimer  81 afcwvfweld..vevse 95 
                  +++w++w+ +  +++++
   CCE29960.1 569 SWAWTRWSFNghIPLNS 585
                  *******9852255555 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 3.2e-11
                  ...E.EEEEEEEETT--B--S..HHH--TT-------EEEEEE CS
  Mo-co_dimer  96 lakekeilvravDealnvqPe..emiwnvlgmlnnawfrvkik 136
                  ++  + +lv+a D+a+n+qP+  +++wn++g l+ aw+r+++ 
   CCE29960.1 606 TQRCTTVLVKATDDAYNTQPDshTATWNLRGNLASAWHRIQVC 648
                  567789***************88899**************985 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.1     4e-15   1.8e-11       3      73 ..     136     207 ..     134     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 4e-15
                 HHHTTTECTT.EEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTT..GGCHHHHHHHHGGEEEEE CS
      Cyt-b5   3 eelskhngkn.dlwvairgkVYDvskflskhpGgesailkyaGkDateafksvv..hsekdaekllkkylvGkl 73 
                  e++kh +++   wv+  +kVYD+++++  hpGg ++il++aG    +  +++   h+++ + ++l +yl+G++
  CCE29960.1 136 NEVRKHGRDSdNPWVIHGDKVYDITEWIPAHPGG-QVILRAAGG-SIDPYWDIFtiHKNQYVYDILSQYLIGYV 207
                 69*****6665****9999***************.678888888.44555555558****************98 PP

>> DUF3086  Protein of unknown function (DUF3086)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   8.8e-05       0.4      82     138 ..     582     639 ..     573     647 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 8.8e-05
     DUF3086  82 Padekeeeekeeeeeaepqfaeqefk.eeakkirklldqyrekPdyygppWqlrrtle 138
                 P+++ +e++++++e+++++ ++ + +  ++  ++++ d y ++Pd ++ +W+lr  l 
  CCE29960.1 582 PLNSLKEKTPKSTEAQSTDTSNPSTQrCTTVLVKATDDAYNTQPDSHTATWNLRGNLA 639
                 66666666666666666665555554056678888999****************8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4784.98
//
Query:       CCE29961.1  [L=441]
Description: uncharacterized protein CPUR_03808 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-59  198.4   0.0    1.6e-58  196.7   0.0    1.8  2  DUF3506   Domain of unknown function (DUF3506)


Domain annotation for each model (and alignments):
>> DUF3506  Domain of unknown function (DUF3506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.11     2e+03     116     132 ..     208     224 ..     205     226 .. 0.89
   2 !  196.7   0.0   8.9e-63   1.6e-58       2     138 ..     267     411 ..     266     412 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.11
     DUF3506 116 skghiAeegFrndkfvd 132
                 s+g i+++ Fr +++++
  CCE29961.1 208 SRGEISHQTFRIRQWTQ 224
                 89************986 PP

  == domain 2  score: 196.7 bits;  conditional E-value: 8.9e-63
     DUF3506   2 lstystldpelytptkekPfqgiyvgdysghgceflllkqkdk....ddeae...lekeedeseeeaekrkee....rgrleAiKLtGDpnvPrGevtF 89 
                 + tystld++lytpt++kP++gi+vgdysghgcefll++q+d+    d       l+++ de++e++e+r++e    rgrleAiKLtGDpnvPrGe+tF
  CCE29961.1 267 VITYSTLDTILYTPTESKPWRGIWVGDYSGHGCEFLLIHQPDDpavtD---AelgLVRRVDETDEAWEERRREtyiyRGRLEAIKLTGDPNVPRGEYTF 362
                 789**************************************8854422...145599***********999999************************* PP

     DUF3506  90 vaedlgeeGlvrvaeeeefkGarvvkskghiAeegFrndkfvdsqLlli 138
                 va+dlg+eG+v +a++ +f+G+r+vks+gh+A +gF nd++++sqLlli
  CCE29961.1 363 VADDLGPEGFVGIASDPPFTGTRIVKSRGHVAGTGFVNDRYTESQLLLI 411
                 ***********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 3410.86
//
Query:       CCE29962.1  [L=528]
Description: uncharacterized protein CPUR_03809 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.031   14.2   0.0      0.054   13.4   0.0    1.3  1  Ser_hydrolase  Serine hydrolase
      0.087   12.3   0.2       0.99    8.8   0.1    2.4  2  LysE           LysE type translocator


Domain annotation for each model (and alignments):
>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     6e-06     0.054      49      92 ..     322     365 ..     297     396 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6e-06
                    HHHC-STTEEEEEETCHHHHHHHHHH.HTTSSSEEEEEEET--SG CS
  Ser_hydrolase  49 aveaaeekvvlvAHSlgclavlhaae.lqlakkvagalLVapadv 92 
                    +  ++ e+ +l++HS g + + h+++ +  +++va+++L+ p  +
     CCE29962.1 322 HH-RQWENFTLISHSYGSVPTTHMLHsPIFKRRVAAIVLIDPVTI 365
                    33.334567****************999************99887 PP

>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00011      0.99     114     168 ..      24      79 ..      21      83 .. 0.90
   2 ?    0.1   0.0     0.053   4.8e+02      96     127 ..     431     462 ..     415     472 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00011
        LysE 114 ilfwlsvisallaka.eqygdagrlilaaglvvasliwfsllaflaarlsrrlssk 168
                 +l+++s++s++l ++ + + +  r++l + lv++ l+++s++a   +rl+r  + +
  CCE29962.1  24 VLYVVSFVSTFLFPTdSNSLRKLRVVLLFLLVAELLFFISVYAPHKKRLRRAARHP 79 
                 89*************99999999999999999999999*****9999999988776 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.053
        LysE  96 lvkpflkglllslsNPkailfwlsvisallak 127
                   +p ++ +++sls    i++++sv + l +k
  CCE29962.1 431 HAQPSRRKVAVSLSARDLIVDAASVAAYLTSK 462
                 567888999****************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4027.37
//
Query:       CCE29963.1  [L=346]
Description: uncharacterized protein CPUR_03810 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-28   96.5   0.5    1.6e-27   95.4   0.3    1.7  2  DUF1769   Protein of unknown function (DUF1769)


Domain annotation for each model (and alignments):
>> DUF1769  Protein of unknown function (DUF1769)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.3     9e-32   1.6e-27       1      55 []     111     166 ..     111     166 .. 0.98
   2 ?   -3.7   0.0      0.84   1.5e+04      24      33 ..     230     240 ..     227     240 .. 0.71

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 9e-32
     DUF1769   1 GddllfGndfdrpirdrlPpgfsaalkfak.fiDpglegDlyadkPylyspllssm 55 
                 G dl+fGndfdrpird+lPpgf++al +++ +iDpgl+gD+yadkPyly+p+lss+
  CCE29963.1 111 GRDLQFGNDFDRPIRDKLPPGFNTALSIVRwWIDPGLDGDAYADKPYLYGPALSSF 166
                 78****************************************************97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.84
     DUF1769  24 aalkfak.fiD 33 
                 ++l f++ +iD
  CCE29963.1 230 YGLDFYNpYID 240
                 67778887877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 3018.57
//
Query:       CCE29964.1  [L=689]
Description: related to protein kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-45  154.1   0.0      2e-44  151.9   0.0    1.8  1  Pkinase      Protein kinase domain
    2.3e-31  109.0   0.0    3.4e-31  108.5   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0044   16.4   0.0      0.028   13.8   0.0    2.1  2  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.074   13.0   0.1       0.35   10.7   0.0    2.1  2  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   0.0   4.5e-48     2e-44       2     259 ..      82     392 ..      81     395 .. 0.90

  Alignments for each domain:
  == domain 1  score: 151.9 bits;  conditional E-value: 4.5e-48
                 EEEEEEEEESSEEEEEEEETTTTE...EEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE..........SSEEEEEEE--TTEBHHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgk...ivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee..........kdelylvleyveggelad 87 
                 +++++lG+G+ G+V+ ++++ +g+   ++A+K++ + ++ +  e kvl E+++l+kl+hpn+v + +v+ e              +++++y++ g+l++
  CCE29964.1  82 VEEKTLGKGGKGVVLLVRHEIDGCalgHFACKRVPVGDDHSWLE-KVLVEVELLAKLSHPNLVSYRHVWLEdvrltrfgpsVACAFILQQYCNAGDLHQ 179
                 6889***************9999744479********9999986.9***********************99999999986545556999********** PP

                 HHH.......HHSS--HH.............................HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTE..EEE-SGTTSEE CS
     Pkinase  88 lle.......rkgslsee.............................eakkiakqilegleylHskgiiHrDlKpeNiLid.ekge..lKitDFGlake 147
                 ++        +    +ee                             e+ +++k + +g++ylH ++ iHrDlKp+N L++ e g+    i+DFG ++ 
  CCE29964.1 180 FVVggapreaT----KEElkaqmrrrsrghadmpldpliarpqlsfeEIYSLFKDVTSGVAYLHGANYIHRDLKPSNCLLHsEAGKltCLISDFGEVQA 274
                 **999854432....4445666889999******************9**********************************777777788*****9999 PP

                 SSSSCSBCTTTSCGGGS-HHHH......TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHH CS
     Pkinase 148 lessskltsfvgtseYlAPEvl......keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdl 240
                  +   k t  +gt  Y+APEvl      ++ ++++k+Dv+slG+ily + +g+ p++g +  ++  +++dql + +   +  + + +e+ ++++++ +l
  CCE29964.1 275 ENVVRKSTGSTGTISYCAPEVLrldasgQYGNFTTKSDVFSLGMILYFMCFGRLPYQGANAIQEELEDIDQLRAEIADWQGFQDERQERPDLPSKLYKL 373
                 8888889*****************998778899******************************99******77666666678899999999******** PP

                 HHHHT-SSGCCSTTHHHHH CS
     Pkinase 241 lkkllkkdpkkRltaeell 259
                 lkkll+ dp +R++a+e+l
  CCE29964.1 374 LKKLLALDPAERPSASEVL 392
                 ***************9987 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.0   7.5e-35   3.4e-31       4     256 ..      84     392 ..      81     395 .. 0.88

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 7.5e-35
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSS..........EEEEEE--TTEBHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeep..........llivteyvkgGdLlkf 91 
                  +k+lG+G  G V   + +  +  +  + a K +  + +++  e++l e++++ kl+hpn+v++  v +++ +           +i+ +y++ GdL++f
   CCE29964.1  84 EKTLGKGGKGVVLLVRHE-IDGCALGHFACKRVPVGDDHSWLEKVLVEVELLAKLSHPNLVSYRHVWLEDVRltrfgpsvacAFILQQYCNAGDLHQF 180
                  6899******99999988.77888899***************************************9955555566668888899************* PP

                  HHHT..............................CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTS CS
  Pkinase_Tyr  92 Lrkk..............................ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekd 156
                  +                                 ++++l++++++s+  +v +G++yL+  +++Hrdl   N+Ll++   + ++ isDfG  ++   +
   CCE29964.1 181 VVGGapreatkeelkaqmrrrsrghadmpldpliARPQLSFEEIYSLFKDVTSGVAYLHGANYIHRDLKPSNCLLHSeagKLTCLISDFGEVQA---E 275
                  *999999*********************************************************************967677********6554...5 PP

                  SEEEETTSSTSGGGGS-HHHHHHSE......EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHH.............HHHHHHTTEES-BBTTSBHHHH CS
  Pkinase_Tyr 157 deyvkkeeaklpvkWmapEslkekk......ftsksDvWsfGvllwEiftlgespypglknee.............vleklkegkrlekpekcpeely 235
                  +  +k+++++  + ++apE+l+         ft+ksDv+s G++l+ ++  g+ py+g ++ +             +  +  +++r e+p+  p++ly
   CCE29964.1 276 NVVRKSTGSTGTISYCAPEVLRLDAsgqygnFTTKSDVFSLGMILYFMCF-GRLPYQGANAIQeeledidqlraeiADWQGFQDERQERPD-LPSKLY 371
                  88899999*************8777778888***************7665.****998855444567777755542333335677888887.9***** PP

                  HHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 236 elmkkcweedpeeRptfselv 256
                  +l+kk ++ dp+eRp+ se++
   CCE29964.1 372 KLLKKLLALDPAERPSASEVL 392
                  ****************99875 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.2e-06     0.028     123     168 ..     227     271 ..     215     282 .. 0.87
   2 ?   -0.6   0.0      0.15   6.9e+02      90     121 ..     331     362 ..     319     366 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.2e-06
         Kdo 123 llkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldk 168
                 l+k+v   +a lh a+  H+dl + n ll+ e+ +++++ + D+  
  CCE29964.1 227 LFKDVTSGVAYLHGANYIHRDLKPSNCLLHSEA-GKLTCLISDFGE 271
                 67899999************************8.999999999965 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.15
         Kdo  90 yrAlllterlegaqdLedllakwaelaeelkr 121
                 + A  + e+le++  L + +a+w+ +++e+++
  CCE29964.1 331 QGANAIQEELEDIDQLRAEIADWQGFQDERQE 362
                 4577899****************997766655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.9e-05      0.35     168     195 ..     243     271 ..     165     278 .. 0.83
   2 ?   -0.9   0.1      0.29   1.3e+03      82     116 ..     359     388 ..     324     466 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.9e-05
                 EE-SS-SGGGEEEC..TTEEEEE-.--TT CS
         APH 168 llHgDlhpgNllvdpddgrvtGvi.Dfed 195
                  +H+Dl+p N l++++ g++t++i Df+ 
  CCE29964.1 243 YIHRDLKPSNCLLHSEAGKLTCLIsDFGE 271
                 69*******************99977765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.29
                 -SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB- CS
         APH  82 llrklsaaqlpellealgeflaalhqvdpaalpla 116
                        +++p+l  +l  +l++l ++dpa++p a
  CCE29964.1 359 E-----RQERPDLPSKLYKLLKKLLALDPAERPSA 388
                 2.....22455555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 5489.94
//
Query:       CCE29965.1  [L=312]
Description: uncharacterized protein CPUR_03812 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.5e-106  354.1   0.0   7.5e-106  353.9   0.0    1.0  1  NUP       Purine nucleoside permease (NUP)


Domain annotation for each model (and alignments):
>> NUP  Purine nucleoside permease (NUP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.9   0.0  4.2e-110  7.5e-106      64     312 ..       1     254 [.       1     255 [. 0.99

  Alignments for each domain:
  == domain 1  score: 353.9 bits;  conditional E-value: 4.2e-110
         NUP  64 maLvlsprFdLtktYfliaGiaGvnPkaatiGsvafaryavqvdlqyeidarelpkdwstgylplgtkepneypkeiygtevfelneaLrdwAvelakk 162
                 ma+vls++FdL++tYfl+aGiaGvnP+ atiGsva+ary++qv+lqyeid+r lp+dw+tgy+++g++ p eyp+ +ygtevfe+n+aLr++A++la+k
  CCE29965.1   1 MAFVLSNKFDLRRTYFLFAGIAGVNPHLATIGSVALARYTIQVALQYEIDPRSLPEDWPTGYISYGRNYPLEYPAITYGTEVFEVNDALREAAYSLASK 99 
                 899************************************************************************************************ PP

         NUP 163 akLkdseeaaayrakY.....eyaaAqkpPsvvkcdtltsdtywsGkllseaaenltkllTngtgtycttaqEdnatleallraakaglvDfsRvivlR 256
                 akL+d ++ ++yr+kY     ++a A+++Psvvkcd +tsd+y+sG++l+ a+en+t+l+Tn+tgtyc++aqE+natle+++r a +glvDfsR+i+lR
  CCE29965.1 100 AKLTDRSSPQQYRSKYsgpvyHHAMASRAPSVVKCDIATSDVYYSGTKLAIAFENTTRLWTNQTGTYCMSAQEENATLEVMVRGAIEGLVDFSRLIILR 198
                 *******************99999*************************************************************************** PP

         NUP 257 tasnFdrpppgvsaleslleaeqggfeaalenlylaGsevveeivknWestykkgv 312
                 t+snFdrppp+ +++e+l++a+q+gf +a++n+++aG+e+v++iv+nW++ y++g+
  CCE29965.1 199 TGSNFDRPPPNLTDWEHLTRADQNGFIIAIDNIFNAGIEIVKGIVANWTCIYSRGI 254
                 ****************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2375.62
//
Query:       CCE29966.1  [L=1259]
Description: probable calcium P-type ATPase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-44  150.3  12.0    1.7e-43  148.4   3.7    3.3  3  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    3.9e-31  108.0   1.7    3.9e-31  108.0   1.7    1.9  2  E1-E2_ATPase     E1-E2 ATPase
    4.1e-21   74.9   0.0    1.6e-20   73.0   0.0    2.1  2  Cation_ATPase    Cation transport ATPase (P-type)
      6e-14   52.8   0.0    3.7e-13   50.2   0.0    2.2  1  Hydrolase        haloacid dehalogenase-like hydrolase
    7.7e-07   28.7   0.1    2.9e-06   26.9   0.0    2.0  2  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    8.6e-06   25.7   0.8    7.7e-05   22.6   0.5    2.2  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.02   14.2   4.6       0.45    9.7   0.4    3.2  3  SLAC1            Voltage-dependent anion channel
      0.038   13.1   0.9      0.065   12.3   0.9    1.3  1  Dak1_2           Dihydroxyacetone kinase family
       0.72    9.6   4.7        0.7    9.6   0.6    2.7  3  Oxidored_q3      NADH-ubiquinone/plastoquinone oxidoreductase


Domain annotation for each model (and alignments):
>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.051     1e+02     110     174 ..     151     214 ..     146     226 .. 0.59
   2 ?    3.2   0.1     0.032        64      48      87 ..     365     418 ..     348     452 .. 0.56
   3 !  148.4   3.7   8.5e-47   1.7e-43       2     180 ..     879    1053 ..     878    1055 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.051
  Cation_ATPase_C 110 rsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewlialllalvvll 174
                      r+r++s+fk++ +  n  ll+ +++s+ + +++  ++ ++a  g +++ + e +++ ++a+vv++
       CCE29966.1 151 RRRQKSFFKLMWIAFNDKLLILLTISAFISLAVGIYQSVTAEEGSSNIEWVEGVTV-VIAIVVIV 214
                      55667777777777776666666666666666666655666666666655554333.33333332 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.032
  Cation_ATPase_C  48 kkmlrriliqgllqalvtllvffltlllfgisekenkls..............s 87 
                      k +++  +i g++++++ ++ f+l l++++ +e+ nk +              +
       CCE29966.1 365 KQLIVFGAIAGAIFFVILFIRFLLRLKSMKDEEPSNKAEaflqllilsitvviI 418
                      344444455666666666666666666555555544322444444444444443 PP

  == domain 3  score: 148.4 bits;  conditional E-value: 8.5e-47
  Cation_ATPase_C    2 lplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenklssnyaqtm 93  
                       ++++++q+LwinL++D++++l La++ p++d++kr+P+++++p+i++ m+++il+q+l+q++v+++v+++ + +f+ +++ +   +++ qt+
       CCE29966.1  879 SIFTVVQLLWINLIMDIFASLGLATDHPSPDFLKRKPEPRNAPIINITMWKMILGQSLYQLAVVFAVHYAEWEIFDPQTEVE---IESLQTL 967 
                       68******************************************************************99999887777665...689**** PP

  Cation_ATPase_C   94 aFitlvlsqifnalnlrsrre..slfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewlialllalvvllvdelvK 180 
                       +F++ v++q+fn  n+r+ ++   ++  +g+ +n++++++ +l+++ q++i++   ++++f+t+pl++ +w ++ll++ ++l+++ l++
       CCE29966.1  968 VFNIYVWMQFFNQHNCRRVDNklDIWY-QGVLRNPWFIGVQMLTIVGQFVIIFK--GGEAFDTVPLTGAQWGWSLLFGGLTLPLGALIR 1053
                       ******************555336777.9999**********************..9***************************99887 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   1.4       6.5   1.3e+04     127     157 ..     177     213 ..     169     219 .. 0.43
   2 !  108.0   1.7   1.9e-34   3.9e-31       4     180 ..     237     441 ..     234     442 .. 0.92

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 6.5
                   HHHHHHHHHS-STTTSSTT......HHHHHHHHHHHH CS
  E1-E2_ATPase 127 lliallvflialllgksla......eallralallva 157
                    +i+l+v +++ ++ ++        e ++ ++a++v+
    CCE29966.1 177 AFISLAVGIYQSVTAEEGSsniewvEGVTVVIAIVVI 213
                   4444444444444433333444334333333333333 PP

  == domain 2  score: 108.0 bits;  conditional E-value: 1.9e-34
                   --EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-............G-TTEE-TT-EEEE-EEEEEEEE CS
  E1-E2_ATPase   4 pptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek............ekgdmvfsGtvvvsgeakavVta 87 
                    ++++v+r+g+ ++id+ ++ +GDi  ++ag+++++Dg++++     ++e ++ GEs +v+k             +   + sGt+v +g  ++ V+ 
    CCE29966.1 237 HREVTVFRSGRAQQIDITQVLVGDIMHIEAGEVIAVDGVLIQACGlYINETSISGESGMVQKtvsgdhdashavLADPFILSGTTVSRGVGRYLVLS 333
                   5789**************************************************************9998876669999****************** PP

                   -TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT................HHHHHHHHHHHHHS-TTHHHHHH CS
  E1-E2_ATPase  88 tgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla................eallralallvaaiPcaLplavp 168
                   +g ++++g+   ++ e   ++tplq kl +lgk+l++++ ++++++f+i+++++                    + l+ +++++++a+P++L+l v+
    CCE29966.1 334 VGVNSTYGRTLMSLHED-IEETPLQAKLGRLGKQLIVFGAIAGAIFFVILFIRFLLRLksmkdeepsnkaeaflQLLILSITVVIIAVPEGLALNVT 429
                   ***************99.99**************999998888888888877554444666788888999999888888****************** PP

                   HHHHHHHHHHHH CS
  E1-E2_ATPase 169 lalalgarrlak 180
                   +ala++++r+ +
    CCE29966.1 430 VALAFATTRMLR 441
                   *********976 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   7.8e-24   1.6e-20       1      90 [.     531     620 ..     531     621 .. 0.96
   2 ?   -3.3   0.0       4.9   9.7e+03      14      35 ..     789     810 ..     784     828 .. 0.74

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 7.8e-24
  Cation_ATPase   1 ilcNsaafsensekdevkllGnktEsALlvlaekl..gldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCth 90 
                    i++Ns+af e+++ +  +++G+ tE+ALl++ +++  +      r++t+ v  +pF+ssrK+m+v+++l +++++rl++KGA+e+i++ C +
     CCE29966.1 531 IALNSTAF-ESDSSESSSYFGSSTETALLNFSRDClgMGLLGTERAKTPVVVMLPFESSRKWMAVLIRL-SSGRYRLLIKGAAEVIFEYCAF 620
                    689*****.9999**********************998899999*************************.6*******************87 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.9
  Cation_ATPase  14 kdevkllGnktEsALlvlaekl 35 
                    +++v ++G+ t  AL   a+++
     CCE29966.1 789 NETVAVTGDGTNDALALKAADV 810
                    56778999*9*99999888887 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   1.9e-16   3.7e-13       3     210 .]     460     809 ..     458     809 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.9e-16
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH.......HHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar.......sgaltgfatfigrgayaigkpewltaldippdlgaaigsaq 94 
                 +v+ Dk+GTLt+ ++ v+                        al  a++++       + ++ +f+      a a g+  +++a+  +++++  i +  
  CCE29966.1 460 CVCSDKTGTLTQNKMTVVAGRI--------------------ALDGAFDDMdapsvekGQSVPNFTI-----ARADGSASLVAAM--SSEVKCIIKDSI 531
                 7999*******99966644333....................3345555555555565777799999.....9999999999999..444444444444 PP

                 HHCHHHHHH.......................................................................................... CS
                 xxxxxxxxx.......................................................................................... RF
   Hydrolase  95 sqgrtvall.......................................................................................... 103
                 +   t++                                                                                            
  CCE29966.1 532 ALNSTAFESdssesssyfgsstetallnfsrdclgmgllgteraktpvvvmlpfessrkwmavlirlssgryrllikgaaevifeycafvvedhtyqlt 630
                 4444444445555666888888888889*********************************************************************** PP

                 .........................................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEH CS
                 .........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 .........................................................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnp 145
                                                                               +vf i dp  ++ e+   v++ ++ag+ v ++tgdn 
  CCE29966.1 631 tarlseedrcrfrdiiqeyaarmlrpvaiaykdfdeseviehpsddpasinlewlasGLIFIGVFGIRDP--LRLEVINSVKKCQEAGVFVRMVTGDNF 727
                 ************************************************99999998766999********..*************************** PP

                 HHHHHHHHHTT..........GGGE.SEEEEHHCES.......STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxx..........xxxx.xxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 146 etaeraanqlG..........ddyf.daviasdiet.......vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                  ta ++a+++G            +f + + ++ + +        a  spe+k+ ++  L+   e va+ GDg nDa al+aA+
  CCE29966.1 728 LTAAAVASECGiyssggiamdGPTFrSLSSEQRN-AviprlqvLARSSPEDKLLLVSHLRSMNETVAVTGDGTNDALALKAAD 809
                 ***********77777666653444233333333.146667888888************988888*****************8 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.9   3.9e+03       6      25 ..      68      87 ..      66      89 .. 0.83
   2 !   26.9   0.0   1.4e-09   2.9e-06      24      69 .]     135     180 ..     131     180 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.9
  Cation_ATPase_N  6 leevlekLetdlenGLtqae 25
                     l ++++ L td   GL+ +e
       CCE29966.1 68 LRGLAAGLRTDIAAGLSVDE 87
                     67889999********9776 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 1.4e-09
  Cation_ATPase_N  24 aeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69 
                      +++a+r + +G N+ + +++ks++++ + +f++ l+ilL ++a +s
       CCE29966.1 135 SQFADRKRIFGTNRHPRRRQKSFFKLMWIAFNDKLLILLTISAFIS 180
                      689****************************************998 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.2   3.9e+02      20      55 ..     705     740 ..     701     759 .. 0.84
   2 !   22.6   0.5   3.8e-08   7.7e-05     195     255 .]     781     842 ..     779     842 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.2
                  HHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  20 tkeaikklkekgikvviATGRslravlpvleelgld 55 
                   ++ +kk++e+g+ v   TG ++ ++  v+ e g+ 
   CCE29966.1 705 VINSVKKCQEAGVFVRMVTGDNFLTAAAVASECGIY 740
                  57889*******************999999998865 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 3.8e-08
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEET.TS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmg.naseevkkaAdyvtksnnedGVakal 255
                  l+++l+  +e v++ GDg ND   L+aa++g+Amg +++e +k+aA+ +  + n  +++kal
   CCE29966.1 781 LVSHLRSMNETVAVTGDGTNDALALKAADVGFAMGiQGTEVAKEAASIILLDDNFASIVKAL 842
                  6789999999************************9789999999999999999999999987 PP

>> SLAC1  Voltage-dependent anion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.027        54     103     155 ..     171     222 ..     122     243 .. 0.70
   2 ?    9.7   0.4   0.00022      0.45      23      88 ..     354     420 ..     329     448 .. 0.72
   3 ?    1.2   0.1     0.092   1.8e+02      78     120 ..     861     902 ..     835     915 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.027
       SLAC1 103 vllWigvllslltavvvvfllftekee.kleeitpawllpvvgllvvallgall 155
                 +ll i++++sl  av++++ ++ e+ + ++e + ++ ++ ++ ++v+a++++  
  CCE29966.1 171 ILLTISAFISL--AVGIYQSVTAEEGSsNIEWVEGVTVVIAIVVIVLASAANDW 222
                 21224444444..5567776677775558999**99999999999999999877 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00022
       SLAC1  23 lp.arglriislilfllalvlfllllvlyllrfilypeavrkelrhpveslflgtfpmglltilngl 88 
                 +p +  l  +++ l ++++++ ++++v++++rf+l+ ++++ e  ++    fl +++++++++++++
  CCE29966.1 354 TPlQAKLGRLGKQLIVFGAIAGAIFFVILFIRFLLRLKSMKDEEPSNKAEAFLQLLILSITVVIIAV 420
                 45556677799999999999999********************9999999*********85555222 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.092
       SLAC1  78 pmgl.ltilnglllvlpgewlatlalvllWigvllslltavvvv 120
                 ++ + + il+++++++ g+++ t++   lWi +++ ++ +++++
  CCE29966.1 861 TINItAGILAITSELV-GDSIFTVVQL-LWINLIMDIFASLGLA 902
                 3333344554455544.4788889999.**********999875 PP

>> Dak1_2  Dihydroxyacetone kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.9   3.3e-05     0.065     144     268 ..     168     297 ..     162     312 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.3e-05
      Dak1_2 144 kevivLpnnkniilaaeqaaelaedk...nvvviptktivqGlaallvfdpersleenveamaeaakavktgevty..Avrdtkidggeikkgdllgia 237
                 k  i+L+ ++ i+la+   ++++ ++   n+  ++  t+v ++ +++   ++++++++  + ++  ++ k+ evt+  + r  +id  ++  gd+++i 
  CCE29966.1 168 KLLILLTISAFISLAVGIYQSVTAEEgssNIEWVEGVTVVIAIVVIVLASAANDWQKDH-KFKKLNDRKKHREVTVfrSGRAQQIDITQVLVGDIMHIE 265
                 556788888888888888888887668867****************9999999888775.4566666666666665116899999999999******** PP

      Dak1_2 238 dgkivvvgkdleeaakkllkkl.ldedselvt 268
                  g++++v+  l +a+   +++  ++ +s +v 
  CCE29966.1 266 AGEVIAVDGVLIQACGLYINETsISGESGMVQ 297
                 *******9998888887777766666666665 PP

>> Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase chain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.36   7.1e+02      62      93 ..     188     219 ..     167     259 .. 0.57
   2 ?    9.6   0.6   0.00035       0.7      46      92 ..     374     420 ..     366     481 .. 0.76
   3 ?   -2.1   0.1       1.5   2.9e+03      81     126 ..     932     975 ..     883     978 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.36
                  TTS----TTCHHHHHHHHHHHHHHHHHHHTT- CS
  Oxidored_q3  62 saeeeepeslsrslalaalligllllalllll 93 
                  s + ee +s  ++   ++++i++++++l  ++
   CCE29966.1 188 SVTAEEGSSNIEWVEGVTVVIAIVVIVLASAA 219
                  43444444444444444455555555444443 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00035
                  IIIHHHHHHHHHHHSSTTS----TTCHHHHHHHHHHHHHHHHHHHTT CS
  Oxidored_q3  46 vGAilvlflFvimllesaeeeepeslsrslalaalligllllallll 92 
                  +GAi  ++lF+  ll+ ++++ +e+ +++ a++ lli  + ++++++
   CCE29966.1 374 AGAIFFVILFIRFLLRLKSMKDEEPSNKAEAFLQLLILSITVVIIAV 420
                  68888888888888888899999999999999988888777776433 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.5
                  HHHHHHHHHHTT--......--------TT-HHHHHHHHTTTTHHH CS
  Oxidored_q3  81 ligllllalllllllessssavdaqvadvsnieaigsllftkyllp 126
                  l+  l+ + +++++++ ++++   + +++ +ie++ +l+f+ y+++
   CCE29966.1 932 LGQSLYQLAVVFAVHY-AEWE-IFDPQTEVEIESLQTLVFNIYVWM 975
                  2222233333444443.3333.444556678888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.89u 0.26s 00:00:01.14 Elapsed: 00:00:00.44
# Mc/sec: 8542.58
//
Query:       CCE29967.1  [L=181]
Description: related to STE6-`Full-size` ABC transporter responsible for export of the `a` factor mating pheromon [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-14   52.2   0.0    1.4e-13   51.6   0.0    1.3  1  ABC_tran    ABC transporter
    3.8e-06   26.9   0.0    4.5e-06   26.7   0.0    1.1  1  AAA_21      AAA domain, putative AbiEii toxin, Type IV TA sys
     0.0013   17.6   0.1      0.002   17.0   0.1    1.5  1  ABC_ATPase  Predicted ATPase of the ABC class
     0.0027   17.2   0.0     0.0031   17.0   0.0    1.1  1  SMC_N       RecF/RecN/SMC N terminal domain
     0.0027   17.9   0.1      0.058   13.6   0.1    2.4  2  SbcCD_C     Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   3.8e-17   1.4e-13      62     136 ..       2      93 ..       1      94 [. 0.86

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 3.8e-17
                 EEE-SS--S-TTSBHHHH....................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  62 gvlpqepqlfpeltvren....................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++pq+p+lfp + +r+n                    ++ + i++++ +l + +  dtvv+++++ LSgGq q v +aral+++p+l++lDEp+
  CCE29967.1   2 AYVPQQPFLFPAT-IRDNiaygistacpmsvqeavtqaAKASGIHDFIISLPDGY--DTVVGDGGQALSGGQAQLVNIARALARRPRLIILDEPS 93 
                 79***********.*************9877766654444444777777777766..*************************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.2e-09   4.5e-06     237     302 ..      66     134 ..      32     135 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.2e-09
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr......ngaQviltTHSplll 302
                 lS G+ +l  ++ al+r++   +l+++DEp + L+P+  +++ e l + +r       g  v+++THS + +
  CCE29967.1  66 LSGGQAQLVNIARALARRP---RLIILDEPSSALDPESAAHVRETLALFTRssswqqDGMAVVVATHSIEMM 134
                 699999**9999*****99...************************99999999**************8876 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   5.7e-07     0.002     299     353 ..      41      96 ..      23     175 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.7e-07
                 EE--TTTB---CCC--STTEEESS-.-HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 299 gvDispFinnLPegkdttkfstedA.SGStsqAanimealeagakllLiDEDtsAt 353
                    i  Fi +LP g dt      +A SG   q +ni++al ++ +l+++DE  sA 
  CCE29967.1  41 ASGIHDFIISLPDGYDTVVGDGGQAlSGGQAQLVNIARALARRPRLIILDEPSSAL 96 
                 567999************88777777****************************94 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   8.7e-07    0.0031     136     209 ..      65     141 ..      20     151 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.7e-07
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSE.....EEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx.....xxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQ.....fivislreemlekadklv 209
                 +LSgG+ +Lv +a  +A    ++  l +lDe  +aLD +  + v e l   ++s++ Q     ++v +++ em++ a k++
  CCE29967.1  65 ALSGGQAQLVNIARALA----RRPRLIILDEPSSALDPESAAHVRETLAlfTRSSSWQqdgmaVVVATHSIEMMRIATKVL 141
                 7***********98876....455699**********99888887777644222222223433899999999999998765 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   1.6e-05     0.058      36      88 ..      69     108 ..      37     109 .. 0.75
   2 ?   -3.1   0.0       2.7   9.8e+03      61      73 ..     135     147 ..     122     148 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
     SbcCD_C  36 GekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 G++  l+ +a a              +++rl++LDE  s lD+es+a + e+l
  CCE29967.1  69 GQA-QLVNIARA------------LARRPRLIILDEPSSALDPESAAHVRETL 108
                 444.33333333............34689*****************9988776 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.7
     SbcCD_C  61 epalrlvfLDEAF 73 
                 + a ++++L E+F
  CCE29967.1 135 RIATKVLVLNEGF 147
                 5667788888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1331.36
//
Query:       CCE29968.1  [L=167]
Description: uncharacterized protein CPUR_03815 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-22   80.0   1.2    1.9e-20   73.2   1.2    2.1  1  Polysacc_synt_4  Polysaccharide biosynthesis
  ------ inclusion threshold ------
      0.028   14.1   1.1       0.07   12.8   0.9    1.8  2  AChE_tetra       Acetylcholinesterase tetramerisation domain


Domain annotation for each model (and alignments):
>> Polysacc_synt_4  Polysaccharide biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   1.2   2.2e-24   1.9e-20       2     187 ..      30     152 ..      29     155 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 2.2e-24
  Polysacc_synt_4   2 EislavkvlerrevpcnlLvFGlghesllwkslnkggrlvlleeddeivekvkkefpeleayevkYktkvsdadeLlsaakkeaecrpvqnlla 95 
                      E+++avkv++++++++++L           +++ kg+ l+l++ ddei++++k++fpe++      + +++d+de++s+++k            
       CCE29968.1  30 EKQFAVKVVQHMQTYWSIL-----------EKV-KGSSLRLTKLDDEIYDHLKEAFPEFN------PEATIDEDEMKSKDGK------------ 93 
                      99*****************...........***.*************************7......899*************............ PP

  Polysacc_synt_4  96 sdckLalrdLPnevyeekWDvilvDaprgfaeeapgrmediytagvlaRarkseeyseetdvfvhdvqrkvekafseeFlceeiavnregl..l 187
                                       +W        r f++ ++++++d y++g+++R++++ ey+e +++fv+++q          F+++eia+n++gl  +
       CCE29968.1  94 ----------------GRW--------RSFMMAYEKKIDD-YNFGTMVRNSSKMEYEESNTIFVPRMQ----------FYAIEIARNKNGLndW 152
                      ................9**........*************.***************************..........************8655 PP

>> AChE_tetra  Acetylcholinesterase tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.9   7.9e-06      0.07       1      29 [.      83     111 ..      83     115 .. 0.90
   2 ?   -3.6   0.0       1.1   9.9e+03      10      21 ..     141     152 ..     140     153 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.9e-06
  AChE_tetra   1 dEaEqeWkaefhRWssyMmdWknqFndYs 29 
                 dE E + k +  RW s+Mm+ +++ +dY+
  CCE29968.1  83 DEDEMKSKDGKGRWRSFMMAYEKKIDDYN 111
                 677888888889****************7 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.1
  AChE_tetra  10 efhRWssyMmdW 21 
                 e+ R ++ + dW
  CCE29968.1 141 EIARNKNGLNDW 152
                 677777777788 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1324.29
//
Query:       CCE29969.1  [L=538]
Description: probable pyruvate kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-171  569.7   4.0   2.3e-171  569.4   4.0    1.1  1  PK         Pyruvate kinase, barrel domain
    3.4e-36  124.0   0.0    9.6e-36  122.6   0.0    1.8  1  PK_C       Pyruvate kinase, alpha/beta domain
    8.1e-05   21.9   0.6    0.00031   19.9   0.3    2.1  2  HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  569.4   4.0  3.9e-175  2.3e-171       2     347 ..      43     388 ..      42     389 .. 0.99

  Alignments for each domain:
  == domain 1  score: 569.4 bits;  conditional E-value: 3.9e-175
                 --SEEEEEESCCCTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHTTTTS.-EEEEE---S-EBB--BTTCSSSEEE-TTSEEEEE-SCT CS
          PK   2 rrtkivctlGPasesvekleklieaGlnvvrlnfshGsheehqerienvreaekklgkk.vaillDtkGpeirtgllkdgkkdielkegdklkvsldek 99 
                 rr+ i+ct+GP+++sv+++++l+++Glnvvr+nfshGs+++hq++i+n rea+k ++++ vai+lDtkGpeirtg++++ ++di +++g+ +++++dek
  CCE29969.1  43 RRSAIICTIGPKTNSVDAINNLRDSGLNVVRMNFSHGSYDYHQSVIDNTREAVKCHAGRpVAIALDTKGPEIRTGNTRN-DEDIPISAGKVMNITTDEK 140
                 899***************************************************999999*******************.88***************** PP

                 CTTTBBTTEEEBS-TTHHHHS-TTEEEEETTTTEEEEEEEEETTEEEEEEESS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEEETTE CS
          PK 100 lkeegdeelialdyknivkdvevGktilvdDGllslkvlevdeekeleveventgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdliaasfv 198
                 + +++d+e++++dykni+k++e+G++i+vdDG+l+++vl+++++k++ev+++n+g ++s+kgvnlp+t+vdlpalsekDkadl+fgvk++vd+++asf+
  CCE29969.1 141 YSTSCDTENMYVDYKNITKVIEPGRVIYVDDGVLAFDVLSIKDDKTVEVRARNNGCISSRKGVNLPNTDVDLPALSEKDKADLKFGVKNNVDMVFASFI 239
                 *************************************************************************************************** PP

                 -SHHHHHHHHHHHTCCCTTSEEEEEE-SCHHHHTHHHHHHHSSEEEEEHHHHHHHSTCCCHHHHHHHHHHHHHHHT--EEEESSTTGGGGTSSS--HHH CS
          PK 199 rkasDvkevrevleeegkeikiiakienqegvenldeileasDgimvarGDlGieipaekvllvqkklikkcnlagkpvitatqmlesmiknPrptrae 297
                 r+a+D+k++r+vl+eegk+i+iiakien++g++n+ eile++Dg+mvarGDlGieipa++v+++qkkli++cn+agkpvi+atqmlesmiknPrptrae
  CCE29969.1 240 RRAQDIKDIRAVLGEEGKQIQIIAKIENRQGLNNFPEILEETDGVMVARGDLGIEIPAAEVFAAQKKLIAMCNIAGKPVICATQMLESMIKNPRPTRAE 338
                 *************************************************************************************************** PP

                 HHHHHHHHHHT-SEEEESHHHHTSS-HHHHHHHHHHHHHHHHHTS-HHHH CS
          PK 298 vsDvanavlDGtDavmLsgetakGkyPveavkamaevaleaekalkelkl 347
                 +sDv+na+ DG+D+vmLsgetakG+yP+eav+ m+e +l+ae++++++++
  CCE29969.1 339 ISDVGNAITDGADCVMLSGETAKGSYPCEAVREMHEACLKAENTIPYVSH 388
                 *********************************************99876 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.0   1.6e-39   9.6e-36       1     117 []     404     526 ..     404     526 .. 0.98

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 1.6e-39
                 HHHHHHHHHHHHHHT-SEEEEE-SSSHHHHHHHHT-TSSEEEEEESHHHHHHHHHHCTTEEHHH.HHHHH..........TTSHHHHHHHHHHHTTSS- CS
        PK_C   1 eaiakaaveaaeelgakaIvvltesGetArliskyrpkvpiiavtpneltarqlalyrGvypvlvekakt.......aestdellreavkvakeaglvk 92 
                 e++a+aav+a+ +l a  I+vl++sGe+A+l+skyrp +pi++vt+n  t+r  +lyrGvyp+l+++ak        +e++d+++++av++a+e +++ 
  CCE29969.1 404 ESCAMAAVRASLDLAAGGIIVLSTSGESAKLLSKYRPVCPIFMVTRNATTSRFGHLYRGVYPFLFPEAKPdfnkvnwQEDVDKRIKWAVNHALELKVLA 502
                 689***************************************************************9998***************************** PP

                 STSEEEEEE-SSSS..SS--EEEEE CS
        PK_C  93 kgdevvvtaGtpkgesgttNtlrVv 117
                 +gd+vvv++G++ g  g+tNtlr+v
  CCE29969.1 503 PGDTVVVVQGWKGG-MGNTNTLRIV 526
                 ************99.********97 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.3   5.2e-08   0.00031      76     184 ..     221     315 ..     212     344 .. 0.76
   2 ?   -1.6   0.0       0.2   1.2e+03      16      33 ..     344     361 ..     336     384 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5.2e-08
                 HHGG.HHHTTSSEEEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTT-TTSTTSHHHHHHH CS
   HpcH_HpaI  76 qdle.vldlgaqvvlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIaavegldgvflGaeDlsadlgtkrspegtevldar 173
                  dl+  ++  ++ v   ++  a++++++ ++l e         k+++++a iE ++g++n +eI+  e+ dgv+++  Dl  ++ +       ev++a+
  CCE29969.1 221 ADLKfGVKNNVDMVFASFIRRAQDIKDIRAVLGEEG-------KQIQIIAKIENRQGLNNFPEIL--EETDGVMVARGDLGIEIPAA------EVFAAQ 304
                 566666777788888888888888888888887776.......9********************8..56777888888888777654......466666 PP

                 HHHHHTTHCEE CS
   HpcH_HpaI 174 eriltaaraag 184
                 +++++ +  ag
  CCE29969.1 305 KKLIAMCNIAG 315
                 66666665555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.2
                 HHCTC--SEEEEESSTSS CS
   HpcH_HpaI  16 kaaiagaDsvliDlEdav 33 
                 +a + gaD v++ +E a 
  CCE29969.1 344 NAITDGADCVMLSGETAK 361
                 677889999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4124.51
//
Query:       CCE29970.1  [L=411]
Description: probable nucleosome assembly protein I [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.7e-101  337.0   6.5   6.7e-101  337.0   6.5    1.6  2  NAP       Nucleosome assembly protein (NAP)
  ------ inclusion threshold ------
        6.2    6.0  25.1        3.5    6.8  16.2    2.1  2  BUD22     BUD22


Domain annotation for each model (and alignments):
>> NAP  Nucleosome assembly protein (NAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.0   6.5  7.5e-105  6.7e-101       1     270 []      87     353 ..      87     353 .. 0.94
   2 ?   -4.1   2.7       0.8   7.2e+03      59      74 ..     382     395 ..     363     409 .. 0.43

  Alignments for each domain:
  == domain 1  score: 337.0 bits;  conditional E-value: 7.5e-105
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--S................................--SSSSTTSTTHHHHHH CS
         NAP   1 rrveaLkklqkelskleaefqeevlelekkyaalykplyekrseIingesepteeeveakedekeeee...eeeekeeekeeekkeeakgipeFWltvl 96 
                 rrv+ L+ +q+e+skle efq+evlelekky a+++plyekr++I+ng++ept++ev+a+e+e+e +    +++++++++++e++e+++gipeFWl+++
  CCE29970.1  87 RRVAGLRAVQQEHSKLEDEFQKEVLELEKKYFAKFTPLYEKRAAIVNGKAEPTDDEVKAGENEEEVQLqaeDSTDANAQSDNEAAEDVAGIPEFWLSAM 185
                 69********************************************************99988554445546778889999999*************** PP

                 HTSHHHHTT--HHHHHHHTTEEEEEEEE-------EEEEEEEE-S-SSB--SEEEEEEEE----........----EEEEEE----B-TT--TTS---- CS
         NAP  97 knvellaeliqerDepiLkhLkdirveyllskekegFtleFeFdeNpyFtnevLtktyilksevdkedpfiydgpeiekaegckIdWkegkdvtvktvk 195
                 kn  +lae+i++rDe +LkhL+d+r+eyl +  k+gF+l FeF+eN+yF+n+v+tkty++++e+ ++ +fiyd     +aeg+kI+W +gkd+tv+++ 
  CCE29970.1 186 KNQTTLAEMITDRDEAALKHLTDVRMEYL-E--KPGFRLIFEFSENDYFSNKVITKTYFYQTESGYGGDFIYD-----HAEGDKIEWYPGKDLTVRVEA 276
                 ***************************95.4..59****************************966666****.....********************* PP

                 ------...-------------GGGGS--B--------..-------HHHHHHHHHHHHHHHHHTHHHHHHHHHHT. CS
         NAP 196 kkqknkktketrtvtkkvpkeSFFnfFsppkvpeeeee..eeeeeeeleelleadyeigealkdkiiPkAveyFtge 270
                 kkq+nk+t++tr+v+k+vp+eSFFnfFspp++p+e+++  +++   ++e++le dy++ge++k+k+iP+A+++Ftge
  CCE29970.1 277 KKQRNKNTNQTRIVKKTVPTESFFNFFSPPQAPSEGDDgdNDDAVGDIEDRLELDYQLGEDIKEKLIPRAIDWFTGE 353
                 ***********************************87766777788999***************************7 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 0.8
                 ................ CS
         NAP  59 akedekeeeeeeeeke 74 
                 ++ed+++eee  +++e
  CCE29970.1 382 MSEDHDDEEE--SDEE 395
                 1111111111..1111 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.5    0.0018        16     118     199 ..      93     171 ..      83     228 .. 0.51
   2 ?    6.8  16.2    0.0004       3.5     145     254 ..     279     403 ..     258     411 .] 0.40

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0018
       BUD22 118 ktvkevveeivesv.kkllgiek...kkkkkeeekkkkkkkkkkkkkkeeee..eeesdkeeesedsedeekeeseddeeeeeededd 199
                  +v+++ ++ ++++ k++l++ek   +k ++  ek+++  + k++ +++e +  e+e++ + ++eds d          ++++++e  
  CCE29970.1  93 RAVQQEHSKLEDEFqKEVLELEKkyfAKFTPLYEKRAAIVNGKAEPTDDEVKagENEEEVQLQAEDSTD---------ANAQSDNEAA 171
                 566667777777665677777774442222222222222222222222222211111112222222222.........1111111111 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0004
       BUD22 145 eeekkkkkkkkkkkkkkeeee................eeesdkeeesedsedeekeeseddeeeeeededdedaee....................... 204
                 +++k+ +++           +                  ++++e ++ d++d   +  + ++             +                       
  CCE29970.1 279 QRNKNTNQT-----------RivkktvptesffnffsPPQAPSEGDDGDNDD---AVGDIED-------------Rleldyqlgedikeklipraidwf 350
                 111111111...........12222333334455554344444444444444...2222222.............122333444223335666666666 PP

       BUD22 205 .......deedeeaeerelaqydgllasddededeyneetdeesseesdssdssesa 254
                         +ed++++  + +++d+    ddeded+++e++d+e+++++++++ + ++
  CCE29970.1 351 tgealafYDEDSDDDGLDGEDFDD----DDEDEDDMSEDHDDEEESDEEDESGKPKQ 403
                 666666633455555555555554....55555533333333333333322222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1280  (0.0713927); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 2754.30
//
Query:       CCE29971.1  [L=1586]
Description: probable myosin MYO2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.7e-261  867.6   1.1   7.7e-261  867.1   1.1    1.2  1  Myosin_head     Myosin head (motor domain)
    3.2e-26   91.6   2.6    3.2e-26   91.6   2.6    2.9  2  DIL             DIL domain
    2.4e-08   33.1  35.9     0.0017   17.9   0.5    6.5  6  IQ              IQ calmodulin-binding motif
    4.7e-05   22.5  21.8    8.2e-05   21.7  21.8    1.3  1  DUF812          Protein of unknown function (DUF812)
    0.00039   20.2   0.2      0.001   18.9   0.2    1.7  1  Myosin_N        Myosin N-terminal SH3-like domain
     0.0012   19.2   0.0     0.0049   17.1   0.0    2.1  1  AAA_22          AAA domain
  ------ inclusion threshold ------
      0.012   16.0   0.0       0.15   12.4   0.0    2.8  2  AAA_16          AAA ATPase domain
      0.027   14.5   2.4       0.12   12.4   2.4    2.3  1  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
      0.028   13.3  23.5      0.052   12.4  23.5    1.4  1  CALCOCO1        Calcium binding and coiled-coil domain (CALCO
      0.053   13.1  13.9      0.049   13.2  11.7    2.1  2  DUF4795         Domain of unknown function (DUF4795)
      0.059   12.5   2.8       0.13   11.3   2.8    1.6  1  Rota_NSP3       Rotavirus non-structural protein NSP3
      0.066   13.1   4.6      0.094   12.6   3.2    2.0  1  Sec34           Sec34-like family
      0.079   12.3  25.7      0.019   14.3  13.5    2.5  2  GAS             Growth-arrest specific micro-tubule binding
       0.15   11.7  20.6      0.056   13.2  15.1    2.6  2  DUF4201         Domain of unknown function (DUF4201)
       0.17   12.0   5.0       0.52   10.4   4.1    2.3  1  Flagellin_N     Bacterial flagellin N-terminal helical region
       0.39   10.5   3.6        1.2    8.9   3.6    1.8  1  Dna2            DNA replication factor Dna2
       0.42   10.7  22.0        0.7   10.0   8.6    3.0  2  BRE1            BRE1 E3 ubiquitin ligase
        3.5    7.3  16.6        6.3    6.5  15.4    2.1  1  DUF745          Protein of unknown function (DUF745)
        3.6    8.0  24.6          4    7.9   6.8    3.1  2  CENP-H          Centromere protein H (CENP-H)
          4    7.5  22.3        1.5    8.9   6.9    2.7  2  ADIP            Afadin- and alpha -actinin-Binding
        5.6    7.2  26.2       0.17   12.1   8.8    3.0  1  Jnk-SapK_ap_N   JNK_SAPK-associated protein-1
        5.7    7.1  11.8       0.77    9.9   0.8    3.7  3  DegQ            DegQ (SacQ) family
        6.3    7.5   8.6          2    9.1   3.6    2.7  2  ING             Inhibitor of growth proteins N-terminal histo
        7.4    6.9  15.8        4.8    7.5   5.7    3.6  3  DUF5082         Domain of unknown function (DUF5082)


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  867.1   1.1    1e-263  7.7e-261       2     677 .]      77     770 ..      76     770 .. 0.94

  Alignments for each domain:
  == domain 1  score: 867.1 bits;  conditional E-value: 1e-263
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S.TSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSH CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklk.iysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGK 98 
                  +dl++Ls+lne++vl++++ Ry +++iYtysg+vl+a+nP+ +++ +y   +++ y gk+r    PH+faia+ea+ ++ +d++nq+i++sGEsGAGK
   CCE29971.1  77 DDLTNLSHLNEPAVLQAIRLRYLQKEIYTYSGIVLIATNPFARVDsLYVPGMVQVYAGKQRATQAPHLFAIAEEAFMDMIRDNKNQTIVVSGESGAGK 174
                  8************************************************************************************************* PP

                  HHHHHHHHHHHHHHSSSSSC........TCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT---TT- CS
  Myosin_head  99 teatKkvlqylasvaeskek........veeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqakeE 188
                  t+++K++++y+a+ ++ ++          +++e ee+il++nPi+EafGnAkt+rndnssRFGK+iei fd k++i+gaki+tYLLE+sR+v+q  +E
   CCE29971.1 175 TVSAKYIMRYFATRESPDNPgarskrgtETMSETEEQILATNPIMEAFGNAKTTRNDNSSRFGKYIEIMFDDKTNIIGAKIRTYLLERSRLVFQPLKE 272
                  ************99988877899999998999****************************************************************** PP

                  -SBHHHHHHHHCSTHHHHHHTT--TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSEEESSH CS
  Myosin_head 189 RnyHiFYqllagaseeekkelkledvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqavlede 286
                  RnyHiFYql+agase +++el + +v++++yl+q+++ t+dgidd++ef++t+k+l+++g+se++q++if+++a++lhlGn++++ +++++    ++e
   CCE29971.1 273 RNYHIFYQLVAGASEAQRQELDVLSVEQFEYLNQGNCPTIDGIDDKSEFEATRKSLQTIGVSETQQSDIFKLLAGLLHLGNVKITASRTES-VLAPTE 369
                  *************************************************************************************999875.677778 PP

                  HHHHHHHHHHTS-HHHHHHHHHSEEEEETTEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS..-S-SEEEEEEEEE-B---SSB-H CS
  Myosin_head 287 eklekaaellgvdaeelekalvkrriktgkevvskalnveqaevardalakaiyerlFdwlverinkslekkk..eekksfiGvLDiaGFEifeknsF 382
                   +leka+++lgvda e++k++vk+++ t+ e ++++l+  qa v rd++ak+iy+ lFdwlv+ in+sl +++  ++ + fiGvLDi+GFE+f knsF
   CCE29971.1 370 PSLEKACTILGVDAPEFAKWIVKKQLITRGENITSNLSQAQAIVVRDSVAKFIYSSLFDWLVDIINHSLATEEvlNRVTAFIGVLDIYGFEHFAKNSF 467
                  88********************************************************************999778899******************* PP

                  HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS-HHHHHHHHHHHH..TTST.TEEETTS CS
  Myosin_head 383 EqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkplGilslLdeecllpkatdetfleklvkaf..skha.kfeksrl 477
                  Eq+ciny+nEkLqq Fn++v+klEqeeY rE+i+w+fidf  dnq++idLie k lG+lslLdee++lp ++de+f++kl+++f  +k++  f+++r 
   CCE29971.1 468 EQFCINYANEKLQQEFNQHVFKLEQEEYLREQIDWTFIDF-SDNQPCIDLIEGK-LGVLSLLDEESRLPMGSDEHFVAKLYQNFatDKQHtFFKQPR- 562
                  ****************************************.7***********6.*****************************7634441455555. PP

                  TTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCH.......B--.........CSSSECCCCCSBHHHHHHHHHHH CS
  Myosin_head 478 kkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeek.......eakaeakksekkkkkkkkkkkfktvgskfkeslae 568
                    g+++F+++HyA +v+Ye egf+eKn+Dt+ ++++++l++s++++l+++++ ++        +a+++a k ++ +k     +++ t+g  f++sl e
   CCE29971.1 563 -FGKTAFTVCHYAIDVTYESEGFIEKNRDTVPDEHMTVLRASSNSFLKQVLEAASAvrekdlaSASSNAVKPAAGRKIGVAVNRKPTLGGIFRSSLIE 659
                  .7**************************************************998877777765666666666777777778899************* PP

                  HHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS.SSSHHHHHHHHHHHT.....T CS
  Myosin_head 569 LmktlestnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkllkedakkaveailkel.....e 661
                  Lm+t+++t++h++RCikpne k+a++++  +vl+qlr++Gvle++ri++aG+p+R+t+eef  rY++l+++ ++++   + +++++ail++       
   CCE29971.1 660 LMNTINNTDVHYIRCIKPNEAKQAWQFEGPMVLSQLRACGVLETVRISCAGYPTRWTYEEFALRYYMLVHSGQWTS---EIRDMANAILTKAlgtstG 754
                  ********************************************************************99987444...5555555555544222225 PP

                  S-GCGEEECSSEEEET CS
  Myosin_head 662 ldkeeykiGktKiFfr 677
                     ++y++G tKiFfr
   CCE29971.1 755 KGLDKYQLGLTKIFFR 770
                  6689***********8 PP

>> DIL  DIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.5       2.2   1.6e+03      29      70 ..     962    1003 ..     934    1049 .. 0.63
   2 !   91.6   2.6   4.3e-29   3.2e-26       1     101 [.    1378    1476 ..    1378    1479 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.2
                  HHHHHHHHHHHHHHCCTS-......-GGGGHHHHHHHHHHHC- CS
         DIL   29 kGlqlrrnlslledWaeeqgl.eeaaekhlapliqaaqllqlp 70  
                   + q+++  s++++W ++++  e a +k+l+     a + +++
  CCE29971.1  962 LAGQVENYESQIKSWKNRHNAlE-ARTKELQTEANQAGIAVAR 1003
                  56677888899999999998843.4444444333333332222 PP

  == domain 2  score: 91.6 bits;  conditional E-value: 4.3e-29
                  HHHHHHHHHHHHHHHHHHHHHS-SB-HHHHHHHHHHHHHHHHCCTS-.....-GGGGHHHHHHHHHHHC-S--HHHHHHHC.TT-TSS-HHHHHHHH CS
         DIL    1 QlfsqlfyfinaelfNrlllrkklcsrskGlqlrrnlslledWaeeqgleeaaekhlapliqaaqllqlpkssledlesilrstcpaLnsaQlkrll 97  
                  Q++++l++++++++fN+ll+r++++s+++Glq+++n++++e+W++++++  + + +l++l+qa++llql+k++l+d+e i+ ++c+ L++ Q+++ll
  CCE29971.1 1378 QTVTELLRLVGVTAFNDLLMRRNFLSWKRGLQINYNITRIEEWCKSHDMP-EGTLQLEHLMQATKLLQLKKATLNDIEIIQ-DICWMLSPNQIQKLL 1472
                  8899********************************************96.5699*****************888886666.*************** PP

                  TTB- CS
         DIL   98 enYr 101 
                  ++Y 
  CCE29971.1 1473 NQYL 1476
                  ***6 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.3     0.015        11       2      20 ..     787     805 ..     786     806 .. 0.92
   2 ?    5.4   1.4     0.025        18       8      21 .]     816     829 ..     809     829 .. 0.83
   3 !   17.9   0.5   2.3e-06    0.0017       2      20 ..     835     853 ..     834     854 .. 0.93
   4 ?   -1.4   0.1       3.8   2.8e+03       9      19 ..     865     875 ..     865     876 .. 0.85
   5 !    8.0   1.3    0.0036       2.7       2      14 ..     883     895 ..     882     901 .. 0.87
   6 !   16.9   2.5   5.1e-06    0.0038       1      21 []     905     925 ..     905     925 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkry 20 
                 ++a++IQ+  R+   R+ry
  CCE29971.1 787 DCAVLIQKNLRAKYYRRRY 805
                 69***********999999 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHH CS
          IQ   8 QaawRGylaRkryk 21 
                 Q+a R+y aR++ +
  CCE29971.1 816 QSAARAYIARQHAR 829
                 ***********965 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 2.3e-06
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkry 20 
                 +aa++IQ++wRG +  k++
  CCE29971.1 835 RAATTIQRVWRGQKEHKKF 853
                 8*************99998 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 3.8
                 HHHHHHHHHHH CS
          IQ   9 aawRGylaRkr 19 
                 +a +Gyl Rk+
  CCE29971.1 865 SAAKGYLRRKQ 875
                 5789*****97 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.0036
                 HHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGy 14 
                  aa++IQ+awR  
  CCE29971.1 883 NAALVIQRAWRSR 895
                 69*********86 PP

  == domain 6  score: 16.9 bits;  conditional E-value: 5.1e-06
                 HHHHHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRkryk 21 
                 r+ +++IQ+ wRG +aR+ yk
  CCE29971.1 905 RRKVTLIQSLWRGKRARRGYK 925
                 6889**************997 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7  21.8   1.1e-07   8.2e-05     312     465 ..     899    1081 ..     781    1091 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.1e-07
      DUF812  312 e..........................elakkaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevk 382 
                  +                          + +++a++ +++  k e+++ el + + ++++k ++l+ +++++es+ik  ++  +++++ ++el+ e +
  CCE29971.1  899 QswrqyrrkvtliqslwrgkrarrgykKIREEARDLKQISYKLENKVVELTQSLGSMKEKNKNLAGQVENYESQIKSWKNRHNALEARTKELQTEAN 995 
                  03333333333333355554444433322367889999999******************************************************** PP

      DUF812  383 lkkktlellpdaeeniekLqalveasaqrlvelakqWekhRvpl...ieeyrelkesksekekeaerkleeikklrekmkevaeel 465 
                   +  +++ l+  e  ++kLq ++++s+++++ ++++  + R+ l   + e+++ k+ +se+ek+  +  +e+++lr+ ++ +   +
  CCE29971.1  996 QAGIAVARLQAMEDEMKKLQLAFDESTANIKRMQEEERELRESLrlsTTELESAKQTCSEREKDNFSLRQELEALRDALEVAKRSA 1081
                  **********************************999999998855579***************************9887766655 PP

>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   1.4e-06     0.001       2      38 ..       9      49 ..       8      50 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.4e-06
                EEEEETTSTTS-EEEEEE..EEESSE..EEEEETTSEEEEE CS
    Myosin_N  2 klVWVpDpkegyvkGeIk..eeeGdk..vtVetedGktvtV 38
                ++ W pD++eg+v+ e +   +eG k  +++++e+G+t+t+
  CCE29971.1  9 TRAWQPDAAEGWVASELVskQIEGTKaqLVFKLENGETKTI 49
                789***************99999*8888***********96 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.5e-06    0.0049       4      77 ..     160     235 ..     157     331 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.5e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl..lrellralglelkaerlssee 77 
                 + + +vv GesG+GKT++++ +++ +  ++++++++++  + t + s++ +++   + + +a+g+ + +++++s++
  CCE29971.1 160 KNQTIVVSGESGAGKTVSAKYIMRYFATRESPDNPGARSKRGTETMSETEEQIlaTNPIMEAFGNAKTTRNDNSSR 235
                 56789*********************99999999666666555544444444423556777777666663333333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00021      0.15      17      51 ..     154     188 ..     148     288 .. 0.86
   2 ?   -0.8   0.1       2.3   1.7e+03       6      25 ..    1064    1084 ..     987    1091 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00021
      AAA_16  17 ervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 +++r++  + +++sGesG GK+  ++ ++r++ ++
  CCE29971.1 154 DMIRDNKNQTIVVSGESGAGKTVSAKYIMRYFATR 188
                 5667777789****************999987766 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.3
      AAA_16    6 eeeleqLlsalervrsgrp.e 25  
                  ++ele+L++ale ++++ p +
  CCE29971.1 1064 RQELEALRDALEVAKRSAPmN 1084
                  567777777777777766654 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.4   0.00017      0.12       3      78 ..     933    1013 ..     931    1051 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00017
  Baculo_PEP_C    3 dvqqLnggggnqfldLtnvLnairlqnvqilaqlatlldaie...tqLnalsedlksllaeldt......rldtlltnLtdalna 78  
                    d++q++    n+ ++Lt+ L +++ +n ++++q+++   +i+   ++ nal+++ k+l +e ++      r    l++++d +++
    CCE29971.1  933 DLKQISYKLENKVVELTQSLGSMKEKNKNLAGQVENYESQIKswkNRHNALEARTKELQTEANQagiavaR----LQAMEDEMKK 1013
                    899**9999*********************99998866666511155555555555555554445433331....2233333333 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4  23.5     7e-05     0.052      24     202 ..     886    1075 ..     878    1087 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7e-05
    CALCOCO1   24 LVvPrAelLqnrLeeclrerae..Llqaqeaanrqr......ekekeeykrdreeldrerkelesrveelkeelkesrekveeleekqkelerlsee 112 
                  LV+ rA   + +L+  ++ r +  L+q     +r r       +e ++ k+ + +l++++ el +++  +ke+ k++  +ve+ e++ k  ++ +++
  CCE29971.1  886 LVIQRAWRSRRQLQSWRQYRRKvtLIQSLWRGKRARrgykkiREEARDLKQISYKLENKVVELTQSLGSMKEKNKNLAGQVENYESQIKSWKNRHNA 982 
                  6677777777777777665543114444333333320000002333455666667777777777777777777777777888888888888888887 PP

    CALCOCO1  113 laeeksall...eakeesearirELEeDiktltqralekEteLeRlkerakkalaqrkeeeaerkqlqakleqseeelrslskelqelrnsla 202 
                  l ++ + l    ++++  +ar++ +E+++k l     e  ++++R++e+ + + + ++   +e ++ ++  ++ e+++ sl +el+ lr+ l+
  CCE29971.1  983 LEARTKELQteaNQAGIAVARLQAMEDEMKKLQLAFDESTANIKRMQEEERELRESLRLSTTELESAKQTCSEREKDNFSLRQELEALRDALE 1075
                  776655554100344446789999999999999999999999999999999999999999999999999999999999999999999998775 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  11.7   6.5e-05     0.049      11     149 ..     940    1087 ..     922    1106 .. 0.81
   2 ?   -3.5   0.0       8.9   6.6e+03      69      97 ..    1288    1316 ..    1273    1329 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.5e-05
     DUF4795   11 klqeaieklqeelekleekvkelekrledkekklealkkqieelek.vkadkeeveeelaekadkeaLatkvsrdq..fDeakkeLekml...eell 101 
                  kl++++++l ++l +++ek k+l ++ e++e+++++ k+  ++le  +k+ ++e +++    a  +a++  + + q  fDe+++ +++m    +el+
  CCE29971.1  940 KLENKVVELTQSLGSMKEKNKNLAGQVENYESQIKSWKNRHNALEArTKELQTEANQAGIAVARLQAMEDEMKKLQlaFDESTANIKRMQeeeRELR 1036
                  667*****************************************97256777777777777788899999988888*****99888888877799** PP

     DUF4795  102 ekleeqeealkkaldtLqeelkekld...rlelepLkeqle..erlkelqkel 149 
                  e+l     +l++a +t +e  k   +   r+ele L++ le  +r   ++ el
  CCE29971.1 1037 ESLRLSTTELESAKQTCSEREKD--NfslRQELEALRDALEvaKRSAPMNGEL 1087
                  ******************55333..2559***********9776666666444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.9
     DUF4795   69 aekadkeaLatkvsrdqfDeakkeLekml 97  
                   +k d e L+  + ++ +   kk+L+km+
  CCE29971.1 1288 IVKHDLESLEFNIYHTWMKVLKKKLHKMV 1316
                  34555555555555555555555555554 PP

>> Rota_NSP3  Rotavirus non-structural protein NSP3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.8   0.00018      0.13     131     206 ..     944    1024 ..     910    1036 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
   Rota_NSP3  131 svikmkklavdkleeGk.lkvdveknevdtedlkskieeleqiidal....ekykdivldldkmneevkldqnsisynsaa 206 
                  +v+ +++ +  + e+ k l  +ve  e + +++k++ + le + + l    ++    v  l++m++e+k +q +     a+
  CCE29971.1  944 KVVELTQSLGSMKEKNKnLAGQVENYESQIKSWKNRHNALEARTKELqteaNQAGIAVARLQAMEDEMKKLQLAFDESTAN 1024
                  5788888888888887636667*************************65322223346789*********99877666555 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.2   0.00013     0.094       3      83 ..     950    1030 ..     948    1040 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00013
       Sec34    3 dqLeskeeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLkyFeeldpitrkLns 83  
                  + L s +e+ ++l  q+++ ++q+++ ++++++ +++t++l+++++q      rl+ + +e+++    F+e     +++++
  CCE29971.1  950 QSLGSMKEKNKNLAGQVENYESQIKSWKNRHNALEARTKELQTEANQAGIAVARLQAMEDEMKKLQLAFDESTANIKRMQE 1030
                  5788999******************************************************99877788877766666665 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3  13.5   2.6e-05     0.019      30     136 ..     919    1025 ..     896    1027 .. 0.90
   2 ?    3.9   9.7     0.041        30      30      95 ..    1006    1071 ..    1004    1087 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.6e-05
         GAS   30 slKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdely 126 
                  + +   ++++++++  ++  ++++++  +l++ L   +e++++L  q++nye++ +s kn ++ l+  +kel++   ++ +   r++++e+e ++l+
  CCE29971.1  919 RARRGYKKIREEARDLKQISYKLENKVVELTQSLGSMKEKNKNLAGQVENYESQIKSWKNRHNALEARTKELQTEANQAGIAVARLQAMEDEMKKLQ 1015
                  55666788999999999999***************************************************************************** PP

         GAS  127 kkfeaaiqev 136 
                    f+++   +
  CCE29971.1 1016 LAFDESTANI 1025
                  9999887665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.041
         GAS   30 slKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlk 95  
                   + +e+++l+   ++ + +++ +++e ++l+e L+  + e+e  ++   + ekd  sl++  + l+
  CCE29971.1 1006 AMEDEMKKLQLAFDESTANIKRMQEEERELRESLRLSTTELESAKQTCSEREKDNFSLRQELEALR 1071
                  466777888888888888888888888888888888888888888888888888777766444333 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  15.1   7.6e-05     0.056      56     169 ..     925    1040 ..     923    1047 .. 0.86
   2 ?    3.4   0.8     0.076        57      82     121 ..    1035    1074 ..    1035    1081 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.6e-05
     DUF4201   56 kkIeernkeLkrlkkkttktv....halthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrvPaLlkDYd 148 
                  kkI e   +Lk+++ k  ++v    + l  +kek + l+ ++++ ++++k+ ++r ++l++++ ++++e +++    ++l++   ++++ +L   +d
  CCE29971.1  925 KKIREEARDLKQISYKLENKVveltQSLGSMKEKNKNLAGQVENYESQIKSWKNRHNALEARTKELQTEANQAGIAVARLQAMEDEMKKLQLA--FD 1019
                  6777778888876666666661111566679*******************************************************9999995..9* PP

     DUF4201  149 ktkekveekrksvkkLrrkvk 169 
                  +  ++++ ++++ ++Lr++++
  CCE29971.1 1020 ESTANIKRMQEEERELRESLR 1040
                  *****************9876 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.076
     DUF4201   82 lkeklhmleselselkkelkekeerlaklrkelykvkler 121 
                  l+e l   ++el+ +k+  +e+e++  +lr+el+ ++   
  CCE29971.1 1035 LRESLRLSTTELESAKQTCSEREKDNFSLRQELEALRDAL 1074
                  58999999*************************9987665 PP

>> Flagellin_N  Bacterial flagellin N-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.1    0.0007      0.52      37     131 ..     994    1086 ..     967    1088 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0007
                   TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTTS-SHHHHHHHHHHHHHHHHHHHHHH-EETTE CS
  Flagellin_N   37 alddaaglaisvslrsqiaglsqlvrnnslgisrlqtaqgalselsdilqrlkelavaasndsnsdedrqslqaelqqLtdelnrianttsfNGe 131 
                   a   +  +a+   ++ ++++l+ + ++++  i+r+q ++  l e     ++  el  a+++ s  ++d  sl++el++L+d+l+  ++++ +NGe
   CCE29971.1  994 ANQAGIAVARLQAMEDEMKKLQLAFDESTANIKRMQEEERELRESLRLSTT--ELESAKQTCSEREKDNFSLRQELEALRDALEVAKRSAPMNGE 1086
                   5667888899999**************************999988777665..7777888888888999***************88889999998 PP

>> Dna2  DNA replication factor Dna2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.6    0.0016       1.2     101     188 ..     928    1013 ..     924    1019 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0016
        Dna2  101 leeeldkekleelldklleknleelyalglteeeakeeikekleeiekwakkyvkksnkakakvekkkekkeklsiskvldiEEniws 188 
                  +ee  d ++++ +l++ + +  ++l +++++++++  +++++ ++i++w +++ + +  +k  ++  ++++  ++++++ ++E+++  
  CCE29971.1  928 REEARDLKQISYKLENKVVELTQSLGSMKEKNKNLAGQVENYESQIKSWKNRHNALEARTKELQT--EANQAGIAVARLQAMEDEMKK 1013
                  5677889999999**************************************99887776555554..455559**********99876 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.8     0.016        12      12      85 ..     938    1011 ..     927    1012 .. 0.92
   2 ?   10.0   8.6   0.00093       0.7       2      68 ..    1008    1074 ..    1007    1080 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.016
        BRE1   12 feelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLkelekef 85  
                    +l++++ +++++l +++ek + l  + +  + ++++ ++  +ale+  k L++  ++    +++L+ +e e+
  CCE29971.1  938 SYKLENKVVELTQSLGSMKEKNKNLAGQVENYESQIKSWKNRHNALEARTKELQTEANQAGIAVARLQAMEDEM 1011
                  55789999999***********************************************************9886 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00093
        BRE1    2 qkELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkll 68  
                  ++E++kl+ af+e  ++++ +++e   l e +   ++e + a+q + + +++  +l++el +L+  l
  CCE29971.1 1008 EDEMKKLQLAFDESTANIKRMQEEERELRESLRLSTTELESAKQTCSEREKDNFSLRQELEALRDAL 1074
                  68*************************************************************9876 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  15.4    0.0084       6.3      61     176 ..     966    1081 ..     956    1083 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0084
      DUF745   61 qqlveqleqelreaeavvqeekkslqsseanakaaakaakqaqqqlealkallkaakenlenaeqvaagaqqelaektqlleaAkkRveeLkkqlke 157 
                      e+  ++ ++ +++++  +k+lq+  ++a +a +  + ++ +++ l+ +++++++n++++++   +  ++l+  t+ le+Ak+   e +k+  +
  CCE29971.1  966 VENYESQIKSWKNRHNALEARTKELQTEANQAGIAVARLQAMEDEMKKLQLAFDESTANIKRMQEEERELRESLRLSTTELESAKQTCSEREKDNFS 1062
                  4444444456678999********************************************************************************* PP

      DUF745  158 arkdlektkkaAykAacAA 176 
                   r++le+ ++a + A+ +A
  CCE29971.1 1063 LRQELEALRDALEVAKRSA 1081
                  ***********99999887 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.8    0.0053         4      13      81 ..     929     996 ..     921    1000 .. 0.82
   2 ?    3.7  11.2       0.1        78      11      82 ..    1000    1081 ..     993    1092 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0053
      CENP-H  13 sellklsqelrelqeeltevekenlrlkrknrelaaellelakekesekeklkeelekleaelkksrqr 81 
                 +e+ +l+q + +l++++ e++++  ++k+kn++la +++  +++ +s+k +  ++le+  +el+++ ++
  CCE29971.1 929 EEARDLKQISYKLENKVVELTQSLGSMKEKNKNLAGQVENYESQIKSWK-NRHNALEARTKELQTEANQ 996
                 67778999999****************************99*******9.3455566666666666555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.1
      CENP-H   11 lssellklsqelrelqeeltevekenlrlkrknrelaael.lelakekesek.........eklkeelekleaelkksrqrw 82  
                  ++ +l++++ e+++lq + +e +++++r+++++rel ++l l +++ +++++           l++ele+l+  l+ +++ +
  CCE29971.1 1000 AVARLQAMEDEMKKLQLAFDESTANIKRMQEEERELRESLrLSTTELESAKQtcserekdnFSLRQELEALRDALEVAKRSA 1081
                  5678899999******************************664444444444596665433227777777777777776655 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.9    0.0021       1.5      57     124 ..     940    1007 ..     927    1017 .. 0.80
   2 ?    2.1   9.8      0.26   1.9e+02      63     118 ..    1019    1074 ..    1001    1081 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0021
        ADIP   57 slnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlkna 124 
                  +l+ ++ +l+ ++ +++ k + l  q+e +e+++++++++++ le++ k+l++ +++    ++rl+  
  CCE29971.1  940 KLENKVVELTQSLGSMKEKNKNLAGQVENYESQIKSWKNRHNALEARTKELQTEANQAGIAVARLQAM 1007
                  56777788888889999999999999999999999999999999999999999988888888888765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.26
        ADIP   63 rkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeel 118 
                   + +a i+r+q + + l ++l  +++el+++++++ + ek++ +l q l  +++ l
  CCE29971.1 1019 DESTANIKRMQEEERELRESLRLSTTELESAKQTCSEREKDNFSLRQELEALRDAL 1074
                  33455556666666666666666666666666666666666666666666665554 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   8.8   0.00023      0.17      76     142 ..     924     996 ..     891    1000 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00023
  Jnk-SapK_ap_N  76 ae......eeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklherete 142
                     +      ++l +i  ++e++  el + + +++e+n++l  +++n++ q+++ +++++ l+ + ++l+++ ++
     CCE29971.1 924 YKkireeaRDLKQISYKLENKVVELTQSLGSMKEKNKNLAGQVENYESQIKSWKNRHNALEARTKELQTEANQ 996
                    222444469***************************************************9999999887665 PP

>> DegQ  DegQ (SacQ) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.13        96       3      19 ..      28      44 ..      26      50 .. 0.81
   2 ?   -2.6   1.4       8.5   6.4e+03       7      19 ..     481     493 ..     477     501 .. 0.79
   3 ?    9.9   0.8     0.001      0.77       7      29 ..     932     954 ..     926     974 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.13
        DegQ  3 KykiEElK.QLLwrLEne 19
                K +iE  K QL ++LEn 
  CCE29971.1 28 K-QIEGTKaQLVFKLENG 44
                4.8999888*******95 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.5
        DegQ   7 EElKQLLwrLEne 19 
                  E  Q  ++LE e
  CCE29971.1 481 QEFNQHVFKLEQE 493
                 5899*******97 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.001
        DegQ   7 EElKQLLwrLEneirETtdSLrn 29 
                  +lKQ+ ++LEn + E t+SL  
  CCE29971.1 932 RDLKQISYKLENKVVELTQSLGS 954
                 579***************99843 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.6    0.0026         2       2      80 ..     934    1017 ..     933    1030 .. 0.74
   2 ?   -1.2   1.6       4.1   3.1e+03      14      70 ..    1019    1078 ..    1006    1082 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0026
                  HHHHHTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.TS..S-HHHHHHHHH....HHHHHHHHHHHHHHHHHHHH CS
         ING    2 LedyldsvenLPlelqrnltelreiDakvqellkeidskiekfl.kngslqknekeeels....riqeelkeaqelldeKiqla 80  
                  L++++  +en   el++ l  ++e+ + +  ++++++s+i+++  ++++l+  +ke +++     i  +  +a+e   +K+qla
  CCE29971.1  934 LKQISYKLENKVVELTQSLGSMKEKNKNLAGQVENYESQIKSWKnRHNALEARTKELQTEanqaGIAVARLQAMEDEMKKLQLA 1017
                  56777778888899******************************8666666666665555554445555555555555566665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4.1
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...TS..S-HHHHHHHHHHHHHHHHHHH CS
         ING   14 lelqrnltelreiDakvqellkeidskiekfl...kngslqknekeeelsriqeelkeaq 70  
                  +e + n+++++e + +++e l+   +++e+     +++++++ + ++el+ ++++l+ a+
  CCE29971.1 1019 DESTANIKRMQEEERELRESLRLSTTELESAKqtcSEREKDNFSLRQELEALRDALEVAK 1078
                  466778888888888888888887666555554445667777777777777777777665 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       6.8   5.1e+03      44      75 ..     825     860 ..     814     862 .. 0.78
   2 ?    3.8   2.5     0.091        68      55     116 ..     910     978 ..     895     983 .. 0.62
   3 ?    7.5   5.7    0.0064       4.8       3      63 ..     978    1038 ..     976    1076 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6.8
     DUF5082  44 kqkkkklekplnsse...sWkGk.eennydgirsnl 75 
                  q+ ++l+++ + +     W+G+ e +++  ir ++
  CCE29971.1 825 RQHARELRTIRAATTiqrVWRGQkEHKKFLAIRKDM 860
                 6777788888777777779***98999988887765 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.091
     DUF5082  55 nssesWkGk.eennydgirs......nlessyqtyvdkldelidaieeEIerLenqiseaqgvldtlqs 116
                 + ++ W+Gk ++  y+ ir+      ++  + ++ v +l +   +++e+ ++L+ q+++ ++ +++ ++
  CCE29971.1 910 LIQSLWRGKrARRGYKKIREeardlkQISYKLENKVVELTQSLGSMKEKNKNLAGQVENYESQIKSWKN 978
                 556689999888888888886664444445555555555555555566666666666666666655554 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0064
     DUF5082    3 tkisklqaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklekplnssesWkGk 63  
                  ++ ++l+a+  el+ e+++    ++rL+++ +++++ + +++++  +++ +  ++ +++ +
  CCE29971.1  978 NRHNALEARTKELQTEANQAGIAVARLQAMEDEMKKLQLAFDESTANIKRMQEEERELRES 1038
                  678999*********************************************9999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1589  (0.0886274); expected 358.6 (0.02)
Passed bias filter:                      705  (0.0393218); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        56  (0.00312343); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 1.45u 0.33s 00:00:01.78 Elapsed: 00:00:00.50
# Mc/sec: 9497.56
//
Query:       CCE29972.1  [L=141]
Description: probable FAP7-involved in the oxidative stress response [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-12   48.7   0.3    2.5e-12   47.5   0.2    1.6  2  AAA_18           AAA domain
    1.6e-06   28.5   0.5    7.9e-06   26.3   0.5    2.0  1  AAA_17           AAA domain
    0.00028   21.3   0.7     0.0012   19.2   0.7    1.9  1  AAA              ATPase family associated with various cellul
    0.00032   21.0   0.0    0.00052   20.3   0.0    1.5  1  AAA_28           AAA domain
     0.0019   18.3   0.3     0.0071   16.5   0.0    1.8  2  ADK              Adenylate kinase
     0.0019   18.1   0.7     0.0027   17.6   0.7    1.5  1  NTPase_1         NTPase
     0.0038   17.2   0.1     0.0063   16.5   0.1    1.5  1  Rad17            Rad17 P-loop domain
     0.0057   17.0   0.0     0.0059   16.9   0.0    1.4  1  Hydin_ADK        Hydin Adenylate kinase-like domain
     0.0063   16.8   0.2      0.012   15.9   0.2    1.7  1  AAA_22           AAA domain
     0.0063   16.7   0.0     0.0099   16.0   0.0    1.5  1  AAA_33           AAA domain
      0.008   15.7   0.2      0.037   13.5   0.0    1.8  2  KTI12            Chromatin associated protein KTI12
  ------ inclusion threshold ------
      0.011   16.1   0.2      0.021   15.2   0.2    1.7  1  AAA_16           AAA ATPase domain
      0.016   15.0   0.4      0.028   14.2   0.1    1.6  2  ATP_bind_1       Conserved hypothetical ATP binding protein
       0.02   14.9   0.1      0.033   14.2   0.1    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
       0.03   14.2   0.1      0.039   13.8   0.1    1.5  1  dNK              Deoxynucleoside kinase
      0.035   13.9   0.2      0.084   12.6   0.0    1.6  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.046   13.9   0.0      0.054   13.6   0.0    1.2  1  Cytidylate_kin2  Cytidylate kinase-like family
      0.078   12.7   0.7       0.14   11.9   0.7    1.7  1  AAA_24           AAA domain
      0.083   12.6   1.7        2.6    7.7   0.4    2.3  2  AAA_30           AAA domain
        0.1   11.6   3.2       0.28   10.2   0.1    2.0  2  T2SSE            Type II/IV secretion system protein
       0.22   11.8   1.9       0.22   11.8   0.7    1.7  2  AAA_19           AAA domain


Domain annotation for each model (and alignments):
>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.2   2.9e-15   2.5e-12       1     101 [.       7     111 ..       7     126 .. 0.84
   2 ?    0.8   0.1      0.79   6.7e+02      25      60 ..      99     132 ..      79     139 .. 0.56

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 2.9e-15
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpealdeskrldedkldklldaleenss.........aleegknlvidghlaelese 89 
                 I++tGtpGvGKtt ++ Ls+r+g+ +v +++v+k++++ +++ +e   +s ++dedk   lld +ee  +          +e+ ++ +++ +l+e +++
  CCE29972.1   7 IIVTGTPGVGKTTHCEILSQRTGLrHVSVNQVVKDKECHEGWSDE--FQSWIVDEDK---LLDSIEEDVKaggkypeakLQENLDSEIMEVLLQEAREA 100
                 9*********************99*********************..9999999999...888888887788888888544444555777777777777 PP

      AAA_18  90 aakdikkvvLta 101
                    +i+ + L+ 
  CCE29972.1 101 FIEEIV-IELQS 111
                 777766.66665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.79
      AAA_18  25 gvnlrdvakenglllevdpealdeskrldedkldkl 60 
                    + +++ e ++ +++d +  ++ +r+++++ +  
  CCE29972.1  99 EAFIEEIVIELQSNTSDDMD--SNIDRIETWVKQWK 132
                 44455566666666666666..55666555555444 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.5   9.3e-09   7.9e-06       1      66 [.      10      90 ..      10     137 .. 0.65

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 9.3e-09
                EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHH.HHHHTTT..............SHSSHHHHCTSHHHHHHHHHHHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqceklvekygfthlsaGdllr.eeakrgg..............lakardemrklpleekkelqkeaaekia 66
                +G PG+GK+t ce l ++ g+ h+s  +++  +e+ +g               l++ +++++ + + ++ +lq+++  +i+
  CCE29972.1 10 TGTPGVGKTTHCEILSQRTGLRHVSVNQVVKdKECHEGWsdefqswivdedklLDSIEEDVKAGGKYPEAKLQENLDSEIM 90
                69****************************966666553333444444444433444444444455555555555555554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.7   1.4e-06    0.0012       1      35 [.       7      41 ..       7     131 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.4e-06
                EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA  1 vllyGppGtGKTllakavakelgvefleisgsell 35
                ++++G+pG+GKT+ ++ + + +g + ++++     
  CCE29972.1  7 IIVTGTPGVGKTTHCEILSQRTGLRHVSVNQVVKD 41
                5899*****************99887777654443 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   6.1e-07   0.00052       1      27 [.       6      33 ..       6      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 6.1e-07
      AAA_28  1 kivitGgestGKTtlleaLaar.gypvv 27
                +i++tG+++ GKTt +e L++r g ++v
  CCE29972.1  6 NIIVTGTPGVGKTTHCEILSQRtGLRHV 33
                599*****************98877765 PP

>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.3e-06    0.0071       1      35 [.       9      43 ..       9      66 .. 0.82
   2 ?    0.1   0.1      0.92   7.9e+02     102     138 ..      88     130 ..      56     136 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.3e-06
                EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  1 llGaPgaGKGtqaeklvkkyglahlstGdllRaev 35
                + G+Pg GK t +e l ++ gl h+s  ++++++ 
  CCE29972.1  9 VTGTPGVGKTTHCEILSQRTGLRHVSVNQVVKDKE 43
                57************************999888765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.92
                 EESEEEEEE--HHHHHHHHHT......GSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxx RF
         ADK 102 kldlvleldvpeevlveRltg......DneetvkkRletykkq 138
                 ++  vl  +++e+ + e + +      D  ++  +R+et+ kq
  CCE29972.1  88 EIMEVLLQEAREAFIEEIVIElqsntsDDMDSNIDRIETWVKQ 130
                 3333333333333333333336666665555555666666555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.7   3.2e-06    0.0027       1      33 [.       6      38 ..       6     116 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.2e-06
                EEEEE--TTSSHHHHHHHHHHHH...GGGEEEE CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlellkssgvkvgGf 33
                ++++TG pGvGKtT ++ +++    + v+v+ +
  CCE29972.1  6 NIIVTGTPGVGKTTHCEILSQRTGLRHVSVNQV 38
                699*************99998877777777655 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   7.4e-06    0.0063      48     111 ..       7      68 ..       2     132 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.4e-06
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdn.qksdfkgltekesrflsqiesfke 111
                 ++++G +G gk+t  ++Ls+  g +       v+ ke +    ++f++ +  e+++l  ie   e
  CCE29972.1   7 IIVTGTPGVGKTTHCEILSQRTGLRHVSVNQVVKDKECHEgWSDEFQSWIVDEDKLLDSIE---E 68 
                 579*********************998877777778877768899*****99998766555...3 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.9e-06    0.0059       2      37 ..       7      42 ..       6     140 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.9e-06
   Hydin_ADK  2 iivhGaPlsGKtatavtLakkYeaAlltiDsvvleA 37
                iiv G+P  GKt+ +  L+++ +   +++ +vv++ 
  CCE29972.1  7 IIVTGTPGVGKTTHCEILSQRTGLRHVSVNQVVKDK 42
                9********************************986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   1.4e-05     0.012       6      29 ..       5      28 ..       1     124 [. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlleql 29
                  ++vtG +G+GKTt ++ l ++ 
  CCE29972.1  5 PNIIVTGTPGVGKTTHCEILSQRT 28
                679**************9988776 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-05    0.0099       2      42 ..       7      47 ..       7     138 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdq 42
                +++ G pG+GK+t  e l +++g  ++s +++ +  +  + 
  CCE29972.1  7 IIVTGTPGVGKTTHCEILSQRTGLRHVSVNQVVKDKECHEG 47
                6899*******************999999996664444333 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.3e-05     0.037       2      48 ..       5      53 ..       4      73 .. 0.70
   2 ?    0.7   0.0      0.35     3e+02     221     254 ..      76     108 ..      50     127 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.3e-05
                .EEEEE--TTSSHHHHHHHHHHHHHHTT--E.EEE-THHHH..TTSSS- CS
       KTI12  2 pLvvltGlPssGKstrakeLakaleeekrsv.vviddeslg.iekdsyk 48
                p +++tG P +GK+t  + L++    ++ sv +v++d+ ++ + +d+++
  CCE29972.1  5 PNIIVTGTPGVGKTTHCEILSQRTGLRHVSVnQVVKDKECHeGWSDEFQ 53
                569*****************99987766665346666666545555554 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.35
                 ................HHHHHHHHHHHHHHHT.T CS
       KTI12 221 lpgsseslelpakkltlaeLsrlrrqFvklnkak 254
                 +p+++++ +l ++ +    L++ r  F++    +
  CCE29972.1  76 YPEAKLQENLDSE-IMEVLLQEAREAFIEEIVIE 108
                 3455555555554.33334555555555544433 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.2   2.4e-05     0.021      24      55 ..       4      35 ..       1     135 [. 0.63

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.4e-05
      AAA_16 24 pelvllsGesGvGKsslvrellralekdggif 55
                +++++++G +GvGK++  + l ++   +++ +
  CCE29972.1  4 SPNIIVTGTPGVGKTTHCEILSQRTGLRHVSV 35
                4899************9988887665554333 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   3.3e-05     0.028       1      28 [.       9      36 ..       9      46 .. 0.87
   2 ?   -1.9   0.0       2.6   2.3e+03     202     202 ..      87      87 ..      50     122 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.3e-05
  ATP_bind_1  1 vvGpaGsGKttfvgalseilelrgrsva 28
                v+G++G+GKtt ++ ls+ + lr  sv+
  CCE29972.1  9 VTGTPGVGKTTHCEILSQRTGLRHVSVN 36
                89****************9998866665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.6
  ATP_bind_1 202 e 202
                 +
  CCE29972.1  87 S 87 
                 2 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   3.9e-05     0.033       1      47 [.       6      57 ..       6     137 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.9e-05
                EEEEE--SSSSHHHHHHHGGGGB.......S--EEEEE--TT--HHHHH--B-- CS
       AAA_5  1 dvlLvGppGtgKselaerlaaal.......nreveyvqltrdtteedlkgrrei 47
                ++++ G pG+gK++  e l++++       n+ v  + ++++++ e  ++++ +
  CCE29972.1  6 NIIVTGTPGVGKTTHCEILSQRTglrhvsvNQVVKDKECHEGWSDE--FQSWIV 57
                5899*******************98877777777777777777655..555555 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   4.6e-05     0.039       1      28 [.       7      34 ..       7     106 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.6e-05
                EEEEESTTSSHHHHHHHHHCCSTCEEEE CS
         dNK  1 ivveGnIgaGKstlvklLskklgvkvfe 28
                i v G+ g+GK+t  ++Ls+++g  +++
  CCE29972.1  7 IIVTGTPGVGKTTHCEILSQRTGLRHVS 34
                7899*******************65543 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.9e-05     0.084      35      59 ..       6      30 ..       2      45 .. 0.81
   2 ?   -1.7   0.1       2.6   2.2e+03     100     118 ..      90     108 ..      83     123 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.9e-05
      RuvB_N 35 hvllyGpPGlGkttlakiiakelgv 59
                 ++++G PG+Gktt ++i+++  g 
  CCE29972.1  6 NIIVTGTPGVGKTTHCEILSQRTGL 30
                5899***************998764 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.6
      RuvB_N 100 veevlysamedfrldivig 118
                 +e +l  a e f  +ivi+
  CCE29972.1  90 MEVLLQEAREAFIEEIVIE 108
                 3444556667776666665 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.3e-05     0.054       2      90 ..       7      94 ..       6     125 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.3e-05
  Cytidylate_kin2  2 ITIsreyGsgGetigeaLAekLglpfydreiieevakelglseeeveevde.rsrlssflskllaarvagdtl.....deklddelfeaqervir 90
                     I ++++ G g++t++e L+++ gl+ ++    ++v+k+++++e +  e++      +++l+++     ag ++     +e+ld+e++e    v+ 
       CCE29972.1  7 IIVTGTPGVGKTTHCEILSQRTGLRHVSV---NQVVKDKECHEGWSDEFQSwIVDEDKLLDSIEEDVKAGGKYpeaklQENLDSEIME----VLL 94
                     5578899********************98...99999999999999888887555566666665554444444633343333333333....332 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   0.00016      0.14       2      23 ..       4      25 ..       3     138 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
      AAA_24  2 klkiliyGpsgiGKTtlakelg 23
                + +i+++G +g+GKTt +  l 
  CCE29972.1  4 SPNIIVTGTPGVGKTTHCEILS 25
                5789************998883 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.4    0.0031       2.6      21      37 ..       7      23 ..       1      27 [. 0.78
   2 ?    4.7   0.0     0.025        21      62     102 ..      24      65 ..      21      69 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0031
      AAA_30 21 avltGpAGtGKttalka 37
                 ++tG +G GKtt  + 
  CCE29972.1  7 IIVTGTPGVGKTTHCEI 23
                799**********8765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.025
      AAA_30  62 Laeelgieastiakllkrlkgrarlepg.tllivDEagmvdt 102
                 L++ +g++  ++++++k  + ++ ++++ + +ivDE  ++d+
  CCE29972.1  24 LSQRTGLRHVSVNQVVKDKECHEGWSDEfQSWIVDEDKLLDS 65 
                 78889999999999998888457899999*******988876 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00033      0.28     130     151 ..       5      26 ..       1      39 [. 0.84
   2 ?    2.3   0.4     0.083        71       4      61 ..      81     135 ..      78     140 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00033
       T2SSE 130 glilvsGgTgsGKttllyallk 151
                  +i+v+G+ g GKtt   +l +
  CCE29972.1   5 PNIIVTGTPGVGKTTHCEILSQ 26 
                 69*************9988776 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.083
       T2SSE   4 lleallddekvsdihvekpervkvrervdgielreveelekaalerlisriaalakld 61 
                 l+e+l  d+++ ++++++  +++++e v ++++++  ++++  + r+   +++  + +
  CCE29972.1  81 LQENL--DSEIMEVLLQEAREAFIEEIVIELQSNTSDDMDS-NIDRIETWVKQWKQDN 135
                 56777..999*********9****99999977777666665.4566666666655555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   0.00026      0.22      10      29 ..       4      23 ..       1      44 [. 0.74
   2 ?   -1.9   0.0       4.3   3.7e+03     109     124 ..      50      65 ..      23      71 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00026
      AAA_19 10 ekvllvtaGpGtGKTrvlkh 29
                +++++vt+ pG GKT+  + 
  CCE29972.1  4 SPNIIVTGTPGVGKTTHCEI 23
                6899***********97654 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.3
      AAA_19 109 DEfqdvdelqyrLlka 124
                 DEfq     + +Ll+ 
  CCE29972.1  50 DEFQSWIVDEDKLLDS 65 
                 5555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:01.12
# Mc/sec: 380.80
//
Query:       CCE29973.1  [L=186]
Description: probable inosine triphosphate pyrophosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-57  194.0   0.0    2.5e-57  193.8   0.0    1.0  1  Ham1p_like  Ham1 family


Domain annotation for each model (and alignments):
>> Ham1p_like  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.8   0.0   1.4e-61   2.5e-57       1     187 []       5     178 ..       5     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 193.8 bits;  conditional E-value: 1.4e-61
                 EEEC-S-HHHHHHHHHHTTTECCCE.EECCCCEE----BSSSHHHHHHHHHHHHHH.HTS-EEEEEEEEEEGGGTTTBGGGTTTTTH.TTCHHHHHHHH CS
  Ham1p_like   1 ivfaTgNkgKlrevkeilaeellevkslkelelpeveEtqgtfeenalkKaraaae.aglpvladDsgLevdaLnglPGvysarfag.egaedeenlak 97 
                 ++f+TgN++Klrevk++l+   +ev+sl      ++eE+qgt+ e++  K+r+aae ++ pvl++D++L++ aL glPG+y+++f+   g+   e+l++
  CCE29973.1   5 VNFVTGNANKLREVKAVLE-PRIEVRSL----PLDIEEVQGTVTEVTESKCRKAAEiTNGPVLVEDTALCFSALAGLPGPYIKWFLAdIGH---EGLNN 95 
                 58****************6.57777777....56899******************976777************************652444...6**** PP

                 HHHHCTHTTS--EEEEEEEEEEEETTTTEEEEEEEEEEEEE-SS.--SSSSTTGGGEEETT-SSBTTTS.CHHHHHHSHHHHHHHHHHHH CS
  Ham1p_like  98 lleeleeeeedrsArfvcvlaladpeeeeellfeGeveGeiveeprgeggfGyDpiFvpeegektfaelskeeknaiShRgkAlekllef 187
                 ll+++   + d+sA++vc+++++++ ++  ++f+G++ G+iv+ +rg+ +fG+DpiF++ + ++tfae+s +ekn+iShRgkAlekl+++
  CCE29973.1  96 LLAAY---P-DKSAEAVCTFGYSEGPGHDPIIFQGRCAGKIVP-ARGPLNFGWDPIFQY-D-DRTFAEMSGDEKNQISHRGKALEKLRHW 178
                 *****...4.589************77777************7.9**************.5.79***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1494.08
//
Query:       CCE29974.1  [L=489]
Description: related to human HAN11 protein and petunia an11 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-14   52.1   8.5    6.1e-06   26.9   0.0    5.5  5  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.015   2.7e+02      10      37 ..     165     197 ..     153     198 .. 0.71
   2 !   10.1   0.5   6.7e-05       1.2       9      38 .]     237     268 ..     230     268 .. 0.78
   3 !   12.5   0.0   1.2e-05      0.22       7      38 .]     278     311 ..     273     311 .. 0.77
   4 ?   -0.6   0.0      0.17     3e+03      14      36 ..     352     376 ..     336     378 .. 0.66
   5 !   26.9   0.0   3.4e-10   6.1e-06       2      38 .]     384     422 ..     383     422 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.015
                 SSS.EEEEEEETTSSE.....EEEEETTSEEEEE CS
        WD40  10 Hss.vtslafspdgaw.....lasGsdDgtvriW 37 
                 Hs  vt l + p ++      l++ s   ++r+W
  CCE29974.1 165 HSYpVTRLLWEPPSSQkqstdLLATS-GDHLRLW 197
                 63348888766666667778855567.8888888 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 6.7e-05
                 SS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                  H  + tsl++++ ++ l+ ++s D t+ iWd
  CCE29974.1 237 DHtAPLTSLDWNKVSPSLIiTSSIDTTCTIWD 268
                 587779***7777777764399*********9 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 1.2e-05
                 EESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 l +H + v++++f+ ++   ++s++ Dg+vr++d
  CCE29974.1 278 LIAHdKEVYDVRFCANSVDvFVSCGQDGSVRMFD 311
                 679988899997666666634799********98 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.17
                 EEEEEETTSSEEEEEE..TTSEEEE CS
        WD40  14 tslafspdgawlasGs..dDgtvri 36 
                   la+sp+ + l++    d  t+ri
  CCE29974.1 352 LRLATSPHDTHLLATFaqDSTTIRI 376
                 4788899999988653345777776 PP

  == domain 5  score: 26.9 bits;  conditional E-value: 3.4e-10
                 EEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 q + +l+GH ++v+++ +sp  +  lasG dD+ v iWd
  CCE29974.1 384 QAILELKGHsGPVNCVEWSPFRRGtLASGADDCQVLIWD 422
                 667789***777****7777777799************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3651.81
//
Query:       CCE29975.1  [L=1020]
Description: related to cation translocating ATPases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-20   72.5   0.0    4.9e-20   71.8   0.0    1.3  1  E1-E2_ATPase     E1-E2 ATPase
    3.5e-13   50.3   0.0    8.4e-09   36.0   0.0    2.5  2  Hydrolase        haloacid dehalogenase-like hydrolase
    2.7e-10   40.4   0.1      5e-08   33.1   0.0    2.6  2  P5-ATPase        P5-type ATPase cation transporter
    0.00021   20.9   0.0     0.0004   20.0   0.0    1.4  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
     0.0081   16.2   0.0       0.02   15.0   0.0    1.6  1  Cation_ATPase    Cation transport ATPase (P-type)


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   1.4e-23   4.9e-20       7     181 .]     373     577 ..     369     577 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 1.4e-23
                   EEEE-TTS-EEEEGGG--TTSEEEEET..T-B--SEEEEEEE-SEEE-TTTS---S-EE-.....................G-TTEE-TT-EEEE.. CS
  E1-E2_ATPase   7 akvirdgteeeidakelvpGDivllka..gdrvpaDgrivegsaevdesaLTGEslpvek.....................ekgdmvfsGtvvvs.. 78 
                   ++v+r+g ++ i+++elvpGD+ +l      + p D +++ g + v+es    Es+pv+k                      +++ +++Gt  ++  
    CCE29975.1 373 VRVLRNGFWKYIASSELVPGDLYELSDpnLTQFPSDSILLTGDCIVNES----ESVPVSKvpateyalcnldleassvsseIARHFLYCGTRLIRar 465
                   7999********************987446899****************....**********************9998765*************** PP

                   .........-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHH CS
  E1-E2_ATPase  79 .........geakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLpla 166
                              a a V++tg +t+ g ++r++  +k++ +++ +   k+++v+++v++l +++ ++ +l l+  +  +++ral+l+++++P+aLp++
    CCE29975.1 466 rpqehregdAVALALVVRTGFNTTKGALVRSMLFPKPSGFKFYRDSFKYISVMAIVAMLGFIASLVNFLRLELAWSVIIIRALDLITIVVPPALPAT 562
                   *******88888999****************************************************999999999********************* PP

                   HHHHHHHHHHHHHHT CS
  E1-E2_ATPase 167 vplalalgarrlakk 181
                   +++ + ++++rl+kk
    CCE29975.1 563 LTIGTNFALSRLKKK 577
                   ************997 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   2.3e-12   8.4e-09       3     156 ..     595     844 ..     593     863 .. 0.82
   2 !   11.5   0.0   7.3e-05      0.26     169     210 .]     938     979 ..     917     979 .. 0.84

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 2.3e-12
                 EEEEESBTTTBCHH.HHHHHHHHHH............CHHHHHHHHHHHHCHHHHHH.HHHHHHH.....................HHHHHHHHHETTT CS
                 xxxxxxxxxxxxxx.xxxxxxxxxx............xxxxxxxxxxxxxxxxxxxx.xxxxxxx.....................xxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttge.psvedvivsa............alalaaaletgsehpigkal.vaaakar.....................sgaltgfatfigr 66 
                   +fDk+GTLt+    ++   i+s             a   + a+e gs+ p ++al + a ++                      +     +   +gr
  CCE29975.1 595 IMCFDKTGTLTEDGlDVLGVRIASEtggtfsdllpreAFLVKNATEAGSRSPVQAALhTMATCHSlrvvdgtlvgdpldqkmfeftG-----WSFEEGR 688
                 679********5552333332222267777777887788888899999********9754444445888888887666555332222.....3334444 PP

                 E.........................................HHHHTHHHHHHHH....HCHHHHHHHHHHHHHHCHHHHHH................. CS
                 x.........................................xxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx................. RF
   Hydrolase  67 g.........................................ayaigkpewltal....dippdlgaaigsaqsqgrtvall................. 103
                                                           ++ +g pe +++      +p+ +++  + +  +g  v+ +                 
  CCE29975.1 689 QrsgdgddddqgelgliksfefasqlrrasvvtrnfgqksgnVFVKGAPEAMKEIccpeSFPSGYDELLSHYTHKGYRVIACatkhlpklswvkaqkmt 787
                 477777999999*************************************************************************************** PP

                 ......TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT CS
                 ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 ......qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG 156
                       + +  + + ++++  +kp +  +v++L + +i  v++tgdn  ta ++a+ +G
  CCE29975.1 788 rlevesDLKFIGFIIFENK--LKPTTSAVVKELLDSNIGAVMVTGDNILTAISVARACG 844
                 ****9999*********99..*************************************9 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.3e-05
                 ESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 169 etvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 +++a  sp+ k++++ +Lq     + + GDg+nD  al+aA+
  CCE29975.1 938 KVFARMSPDEKHELVLKLQSIDFCCGFCGDGANDCGALKAAD 979
                 448999*************5555899***************8 PP

>> P5-ATPase  P5-type ATPase cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0     0.001       3.6       1      23 [.     172     194 ..     172     195 .. 0.92
   2 !   33.1   0.0   1.4e-11     5e-08      57     125 .]     192     255 ..     191     255 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.001
   P5-ATPase   1 edleieiaGyrtsrwrlalyilg 23 
                 ed +i+iaG+rts+++ +ly+ +
  CCE29975.1 172 EDITIVIAGFRTSKTGWLLYWTV 194
                 789*****************976 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.4e-11
   P5-ATPase  57 vvliedefgelsvkkvrkleyerplstvfsseqeegeekeieskeseekdpelqqlryfdyryiryvwn 125
                 + +ie+++gel   +v + ey+rp+s++f        +k + +  ++e+dp +++lr+++yry+r++++
  CCE29975.1 192 WTVIENQWGELVRIRVISNEYGRPVSSIF-----GLPQKPMLYCLDDENDPVVDHLRSLNYRYMRLYYH 255
                 89***************************.....44466677777899********************8 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.1e-07    0.0004      18      68 ..     279     328 ..     263     329 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.1e-07
  Cation_ATPase_N  18 enGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalv 68 
                       +GL+++e a r  ++G N + + ++ks+ ++l +++ +p++i+ +++ ++
       CCE29975.1 279 RSGLDNEEKAIREIVFGQNLI-DIEQKSIGQLLMDEVLHPFYIFQIASLVL 328
                      69*******************.************************99887 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.4e-06      0.02      49      88 ..     705     744 ..     663     745 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.4e-06
  Cation_ATPase  49 vqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrC 88 
                    ++ ++F s+ +r+svv ++  +k+  ++vKGApe + + C
     CCE29975.1 705 IKSFEFASQLRRASVVTRNFGQKSGNVFVKGAPEAMKEIC 744
                    6889******************************988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1020 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.41
# Mc/sec: 7472.11
//
Query:       CCE29976.1  [L=238]
Description: related to N-methyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-25   88.6   0.1    4.9e-25   88.3   0.1    1.0  1  CMAS             Mycolic acid cyclopropane synthetase
    2.6e-15   56.9   0.0    3.9e-15   56.3   0.0    1.3  1  Methyltransf_25  Methyltransferase domain
    6.8e-15   55.5   0.0      1e-14   55.0   0.0    1.2  1  Methyltransf_11  Methyltransferase domain
    4.5e-12   46.6   0.0    7.1e-12   45.9   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
      7e-12   45.4   0.0    1.3e-11   44.5   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    5.7e-10   39.3   0.0    7.2e-10   38.9   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    5.7e-08   32.5   0.0    8.8e-08   31.9   0.0    1.2  1  MTS              Methyltransferase small domain
    3.5e-06   26.5   0.0    4.5e-06   26.2   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.4e-05   24.8   0.0    5.1e-05   23.0   0.0    1.7  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    0.00017   21.4   0.0    0.00036   20.3   0.0    1.7  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    0.00081   18.9   0.0     0.0029   17.1   0.0    1.7  2  Methyltransf_4   Putative methyltransferase
    0.00092   19.0   0.0     0.0013   18.5   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
     0.0043   16.5   0.0      0.006   16.0   0.0    1.2  1  TehB             Tellurite resistance protein TehB
  ------ inclusion threshold ------
       0.04   13.6   0.2        2.1    8.0   0.0    2.8  2  DUF3830          Protein of unknown function (DUF3830)
      0.066   13.0   0.0         10    6.0   0.0    2.3  2  HycI             Hydrogenase maturation protease
      0.082   12.2   0.0       0.11   11.7   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
       0.12   11.4   0.0       0.15   11.1   0.0    1.2  1  RrnaAD           Ribosomal RNA adenine dimethylase


Domain annotation for each model (and alignments):
>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.1   4.7e-28   4.9e-25      52     264 ..       3     219 ..       1     227 [. 0.81

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 4.7e-28
                 HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHHHTS-SSS-EEE..EES-GGG-----SEEEEES-GGGTSGGGHHH CS
        CMAS  52 dlileklelkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrvdeldlerkvev..klldyedldekvdrvvsvgafehvgkenydt 147
                 ++ ++++elk+Gm +Ld+GcGWGs ++  +e   + ++ +   S+ q+ + +++  ++++++ + +  ++ dye  ++ +drvvs+++feh+  +nyd 
  CCE29976.1   3 RTYIDRAELKDGMDILDLGCGWGSGAMFFAEMLpNSSITAFSNSRTQKLHIEAEATRRNITNIKVItgDVVDYEFDPGSFDRVVSIELFEHM--KNYDL 99 
                 567899*****************9888887775377888889999999999999999998888877335899987788*************7..79*** PP

                 HHHHHHHHS-TT-EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEE.EEE-HHHHHHHHHHHHHHHHHT....HHHHH CS
        CMAS 148 ffkklkkllkedGllllhtitslhkkelaerglklkfidkeiFPgGelpsieeieeeiseagftvvd.veslrahYakTLkaWaealqen....kdeai 241
                  ++k+++ lk++G l +h  t +++    e+     +++++ F gG++ps + + +   ++++++++ +   ++hY kT ++W + + +n    + +++
  CCE29976.1 100 LMAKVSRSLKPGGKLFVHIFTHCSTPYDYEE----GWMTTHFFTGGTMPSADLLLY--FQNDLQIKKqWWVNGIHYSKTCEDWLASMSANvktmWPHLV 192
                 *********************9999888855....5****************9998..4556777651555689*********8877665222266778 PP

                 HHSHHHHHH....HHHHHHHHHHHHHH CS
        CMAS 242 alvseevar....myelYLagcaeaFr 264
                 ++++e+ a     +++ +  +c+e F 
  CCE29976.1 193 ETYGERDATtwfyRWQIFYMACSELFA 219
                 888887554111156777888888886 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   3.7e-18   3.9e-15       1      97 []      17     112 ..      17     112 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 3.7e-18
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      +LdlGcG G  ++ +a+ l+++++t++  s ++  +++++a ++++ n+++++gd+ d++f+ gsfD vvs+  ++h+++  ++ ++++++r L
       CCE29976.1  17 ILDLGCGWGSGAMFFAEMLPNSSITAFSNSRTQKLHIEAEATRRNItNIKVITGDVVDYEFDPGSFDRVVSIELFEHMKN--YDLLMAKVSRSL 108
                      8******************99***********999999999999999************************988***985..5689******** PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      kpgG
       CCE29976.1 109 KPGG 112
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   9.5e-18     1e-14       1      96 []      18     116 ..      18     116 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 9.5e-18
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+GcG G+ a  +a+    ++++++  s ++    +++a ++++ +++++ +d+ +  f  +sfD vvs e ++h+++ + +++++ R Lkpg
       CCE29976.1  18 LDLGCGWGSGAMFFAEMLpnSSITAFSNSRTQKLHIEAEATRRNItNIKVITGDVVDYEFDPGSFDRVVSIELFEHMKNYDLLMAKVSRSLKPG 111
                      8**************99899*******99999977777777777789*********************************************** PP

                      EEEEE CS
  Methyltransf_11  92 Gllvi 96 
                      G+l++
       CCE29976.1 112 GKLFV 116
                      **986 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   6.7e-15   7.1e-12       1      99 []      18     114 ..      18     114 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 6.7e-15
  Methyltransf_12   1 LeiGcGtGsllralleklpdieyt.gvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklL 93 
                      L++GcG Gs ++ ++e lp++++t ++   ++ ++  +e +++++  n ++++ ++ d + ++  +sfD vv++++++h+k+ + +++++ + L
       CCE29976.1  18 LDLGCGWGSGAMFFAEMLPNSSITaFSNSRTQKLHIEAEATRRNI-TNIKVITGDVVDYEFDP--GSFDRVVSIELFEHMKNYDLLMAKVSRSL 108
                      8***********************999999999955555555555.57777777777755443..4**************************** PP

  Methyltransf_12  94 kpgGrl 99 
                      kpgG+l
       CCE29976.1 109 KPGGKL 114
                      ****97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.2e-14   1.3e-11       2     109 ..      12     116 ..      11     133 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 1.2e-14
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkile 95 
                      ++g+ +lDlGCG G  +  +a e+ p++ ++ + +s +   + +++a + +++n+++  gd+ + e  + + +fD ++s e++ ++++ d  + 
       CCE29976.1  12 KDGMDILDLGCGWGSGAMFFA-EMLPNSSITAFSNSRTQKLHIEAEATRRNITNIKVITGDVVDYE--FDPGSFDRVVSIELFEHMKNYDLLMA 102
                      789******************.****************99999999********************..99************************ PP

  Methyltransf_31  96 eiervlkpggilli 109
                      +++r lkpgg l +
       CCE29976.1 103 KVSRSLKPGGKLFV 116
                      **********9976 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   6.8e-13   7.2e-10      16     124 ..       9     122 ..       2     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 6.8e-13
  Methyltransf_23  16 llpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdp 98 
                      +   l+ g+ +Ld+GcG G+ +  ++e     s+t++  s+ +   +e         ++k    d +   + +++ g+fd +v++e++eh++++
       CCE29976.1   9 AE--LKDGMDILDLGCGWGSGAMFFAEMLPnsSITAFSNSRTQKLHIEaeatrrnitNIKVITGDVV---DYEFDPGSFDRVVSIELFEHMKNY 97 
                      43..78999***********9999999865569**99999988777778888887755555555555...8888999***************** PP

  Methyltransf_23  99 pellrqiatllkpgGylllseplasl 124
                        l++++ + lkpgG l+++ ++  +
       CCE29976.1  98 DLLMAKVSRSLKPGGKLFVHIFT-HC 122
                      *******************9985.34 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   8.4e-11   8.8e-08      32     142 ..      14     121 ..       2     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 8.4e-11
                 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB.HHHHHHHHHHHHHTTGCEEEEE-STTT.TSTTS-EEEEEE---STTTCHCHHHHHHHHHHHHHHH CS
         MTS  32 sgkvlDlGcGaGvlgaalakespeaevtlvdvd.arAlesakenleanklevevvasdvle.eveekkfdlivsNPPfhagkatelavaeeliaeAkea 128
                   ++lDlGcG+G  ++ +a++ p+ ++t++ ++ ++ l++  e  ++n  +++v++ dv++ e+++++fd +vs   f + k+      + l+a+  + 
  CCE29976.1  14 GMDILDLGCGWGSGAMFFAEMLPNSSITAFSNSrTQKLHIEAEATRRNITNIKVITGDVVDyEFDPGSFDRVVSIELFEHMKN-----YDLLMAKVSRS 107
                 5579**********************8887666167888888889999999*******98747889********888877777.....778899999** PP

                 EEEEEEEEEEEETT CS
         MTS 129 LkegGeLliVanrk 142
                 Lk+gG+L++ + ++
  CCE29976.1 108 LKPGGKLFVHIFTH 121
                 *******9866555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   4.3e-09   4.5e-06      41     160 ..       7     125 ..       3     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 4.3e-09
                      HH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-G.GG-S-HH CS
  Ubie_methyltran  41 klvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGl.rnvtDkl 133
                      ++   k g ++lD+ +G g  a+ +++++ ++      +   + L++ e+ + ++  +ni+ ++++  + +f+ +sfD v vs  l   + +++
       CCE29976.1   7 DRAELKDGMDILDLGCGWGSGAMFFAEMLPNSSITAFSNSRTQKLHI-EAEATRRNITNIKVITGDVVDYEFDPGSFDRV-VSIELfEHMKNYD 98 
                      5566789*********************9999887778877888877.5567778899********************87.5555516789999 PP

                      HHHHHHHHHEEEEEEEEEEEE----SH CS
  Ubie_methyltran 134 kaLkeayrvlkpGGrlvvlefskvelp 160
                        + ++ r lkpGG+l+v  f++  +p
       CCE29976.1  99 LLMAKVSRSLKPGGKLFVHIFTHCSTP 125
                      999**************9988887665 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   4.8e-08   5.1e-05       6      83 ..      11      85 ..       8      87 .. 0.91
   2 ?   -1.3   0.0       1.4   1.4e+03     120     143 ..     100     126 ..      90     139 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 4.8e-08
                     --TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC..EEEE CS
  Methyltr_RsmB-F  6 pqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDri 83
                     ++++  ilDl ++ G+   + ae++ +++ ++A  ++++   ++++  +r ++tn++v+++D+  ++ + g   fDr+
       CCE29976.1 11 LKDGMDILDLGCGWGSGAMFFAEML-PNSSITAFSNSRTQKLHIEAEATRRNITNIKVITGDVVDYEFDPGS--FDRV 85
                     567778******************5.5678****999999999***********************999997..***9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
                      HHHHHCCCEEEEEEE...EEEES--ST CS
  Methyltr_RsmB-F 120 llsaaidllkkgGvl...vYsTCsvlv 143
                      l+  +  +lk+gG l   +++ Cs   
       CCE29976.1 100 LMAKVSRSLKPGGKLfvhIFTHCSTPY 126
                      334455688999988444577788655 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.4e-07   0.00036      66     132 ..       6      71 ..       1     121 [. 0.84

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.4e-07
                 HHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTC.EEEEEESBHHHHHHHHHHHHHCTTCSEEEEES- CS
        PCMT  66 lellelkkgarvLevGsGsGyltavlarlvgekg.rvvsierikelveeakrnlkkldlenvivvvgD 132
                 ++  elk+g+ +L++G+G G  +  +a+++ ++  ++ s  r+++l  ea+++  + +++n++v++gD
  CCE29976.1   6 IDRAELKDGMDILDLGCGWGSGAMFFAEMLPNSSiTAFSNSRTQKLHIEAEAT--RRNITNIKVITGD 71 
                 45557************************987653889999999**9999876..6678899999988 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.8e-06    0.0029       4      76 ..      16      85 ..      13      89 .. 0.91
   2 ?   -1.0   0.0         1   1.1e+03      98     115 ..      99     116 ..      96     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.8e-06
                    EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS-TTSEEEE CS
  Methyltransf_4  4 vvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllelledgsleki 76
                     +l++GcG G+  +  A++ P+ ++ +   +++   ++ +++ +++++N++++ gd    +   + +gs++++
      CCE29976.1 16 DILDLGCGWGSGAMFFAEMLPNSSITAFSNSRTQKLHIEAEATRRNITNIKVITGDV---VDYEFDPGSFDRV 85
                    689*****************************************************7...5566888888776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1
                     HHHHHHHHHEEEEEEEEE CS
  Methyltransf_4  98 ellkelarvLkkgGvlel 115
                      l++++ r Lk+gG l +
      CCE29976.1  99 LLMAKVSRSLKPGGKLFV 116
                     6789999*******8864 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.2e-06    0.0013      27     111 ..      11      90 ..       1     126 [. 0.70

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.2e-06
      DUF938  27 e....rvLEiasGtGqHAvffApalpnlkwqpsdqdeelresiaawadelalsnlkpPleldvtaevapvereappapasidailsinl 111
                       +L+++ G G  A+ffA+ lpn    +  + ++++  i+a a+   ++n+k  +    t +v ++e      p s+d ++si l
  CCE29976.1  11 LkdgmDILDLGCGWGSGAMFFAEMLPNSSITAFSNSRTQKLHIEAEATRRNITNIKV-I----TGDVVDYE----FDPGSFDRVVSIEL 90 
                 222336************************999999999999************986.3....33333334....23455555555555 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.7e-06     0.006      30     129 ..      13     113 ..       4     136 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.7e-06
                 -S-EEEEES-TTSHHHHHHH..HTT-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG----S.-EEEEEEESSGGGS-GGGHHHHHHHHHHTEE CS
        TehB  30 kpgkvldlgcgqgrnslyls..llgydvtawdknensiafleeikekenlknistalydineaklde.rydfilstvvlmfleaeripsiienmqectk 125
                 +   +ldlgcg g  +++++  l    +ta+ +  +   ++e  + + n++ni+  + d+ + ++d   +d ++s  ++   + +    +++ + +  k
  CCE29976.1  13 DGMDILDLGCGWGSGAMFFAemLPNSSITAFSNSRTQKLHIEAEATRRNITNIKVITGDVVDYEFDPgSFDRVVSIELFE--HMKNYDLLMAKVSRSLK 109
                 55679************997324467899**999999999*************************953799999976555..55566678888888888 PP

                 EEEE CS
        TehB 126 vggy 129
                 +gg 
  CCE29976.1 110 PGGK 113
                 8884 PP

>> DUF3830  Protein of unknown function (DUF3830)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0     0.002       2.1      68     132 ..      68     188 ..      48     196 .. 0.67
   2 ?    1.9   0.1      0.15   1.6e+02      86     111 ..     202     227 ..     191     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.002
                 -TTEEEEEEEEHHHH..SSTTT---......................................................EEEE-SSS---EETTTEE-- CS
     DUF3830  68 ipGdvvlfsfektel..gnpgygye......................................................laifygrgnlllngdvGwvp 110
                 i+Gdvv ++f+++++    + + +e                                                        ++y ++ l++  ++ wv 
  CCE29976.1  68 ITGDVVDYEFDPGSFdrVVSIELFEhmknydllmakvsrslkpggklfvhifthcstpydyeegwmtthfftggtmpsaDLLLYFQNDLQI-KKQWWVN 165
                 55666666666655532223334445555556666666666666666666666666666666667777777777777655578999*****.8889*** PP

                 EEEEEE.EEESHHHHHHHHHHHH CS
     DUF3830 111 gnvfat.ivegldelaeacedil 132
                 g+++ +  ++ l+++ ++ ++++
  CCE29976.1 166 GIHYSKtCEDWLASMSANVKTMW 188
                 ****9867888999999999988 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.15
                 TT---EEEE-SSS---EETTTEE--E CS
     DUF3830  86 gygyelaifygrgnlllngdvGwvpg 111
                   +y  +ify   + l++ d G + g
  CCE29976.1 202 TWFYRWQIFYMACSELFAYDGGNIWG 227
                 5588999***************9987 PP

>> HycI  Hydrogenase maturation protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.019        20      38      69 ..      66      97 ..      57     136 .. 0.73
   2 ?    6.0   0.0    0.0095        10      75     126 ..     142     194 ..     128     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.019
                EEEEEEE--SSS-TT-EEEEECCHHHHHHTTC CS
        HycI 38 kliivDavdfglepGevkiikddevpkklkak 69
                k+i  D+vd++ +pG++ ++   e+++ +k++
  CCE29976.1 66 KVITGDVVDYEFDPGSFDRVVSIELFEHMKNY 97
                68888***********9888887777655554 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0095
                 CHCHHHHHHHHHHCCS--SEEEEEEE--.S-BST.CCS--HHHHCCHHHHHHH CS
        HycI  75 qlplaevlklleekgeipkevillgvqp.esledvgielseevkkavekavel 126
                 ++p a++l + +++ +i+k+  + g+ + ++ ed+  ++s +vk + + +ve+
  CCE29976.1 142 TMPSADLLLYFQNDLQIKKQWWVNGIHYsKTCEDWLASMSANVKTMWPHLVET 194
                 68999*******************9997256788*************999986 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.11      56     164 ..       7     116 ..       1     136 [. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                     HSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS.-----TTEEEEES-TTTS-----SEEEEESS.GGGS-HHHHHHH CS
  Methyltransf_2  56 eafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehl.sageeervefvgGdffkdslPeaDaillkrv.lhDwsdekcvkl 148
                        +l+    ++D+G G G  a   +++ P+ +++ f  ++  +   e   +  + ++++++ Gd+ + +   +    ++++ l+++  ++   l
      CCE29976.1   7 DRAELKDGMDILDLGCGWGSGAMFFAEMLPNSSITAFSNSRTQKLHIEAEaTRRNITNIKVITGDVVDYEFDPGSFDRVVSIeLFEHM-KNYDLL 100
                     55567777889**************************876543322111112347789*********998866655555555377776.456889 PP

                     HHHHHHH--TT-EEEE CS
  Methyltransf_2 149 LkrvkkalpagGkviv 164
                     +++v ++l++gGk+ v
      CCE29976.1 101 MAKVSRSLKPGGKLFV 116
                     99***********976 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00015      0.15      23      92 ..       6      79 ..       1     128 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
                HHHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-..HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHH CS
      RrnaAD 23 ldklnleekltvleigpGkGilTeeLakra..kqvvvlEld..erLakllqkklskdeklkvvhqDflkfetpe 92
                +d ++l++ + +l++g G G     +a+++   + +++ +   ++L  + +++ ++ +++kv+  D+ ++e+  
  CCE29976.1  6 IDRAELKDGMDILDLGCGWGSGAMFFAEMLpnSSITAFSNSrtQKLHIEAEATRRNITNIKVITGDVVDYEFDP 79
                799***************************998999997651245665666655599**********9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1794.06
//
Query:       CCE29977.1  [L=256]
Description: related to non-canonical ubiquitin conjugating enzyme 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-18   65.4   0.0    6.1e-18   64.8   0.0    1.2  1  UQ_con    Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.091   13.1   0.0       0.15   12.3   0.0    1.4  1  RWD       RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   6.8e-22   6.1e-18       1     110 [.      20     128 ..      20     134 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 6.8e-22
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGS..TTT--TTSHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLk..eekWspaltl 97 
                 r+ +e++e++k++++ ++a++ ++ +lfew++++ gp+++ Y +g+++ ++ +p+ YPl+pP+++f t+  +   +++ e+cl+i    ee+W+pa+ +
  CCE29977.1  20 RILREAAEMSKSPSKDYTAEPLES-DLFEWHFTLRGPPNSDYSEGLYHGRIILPSAYPLRPPNFRFLTP--NGRFEANREICLSISGhhEETWQPAWGI 115
                 7899*******************6.*****************************************995..67788999******7633666******* PP

                 HHHHHHHHHHHHS CS
      UQ_con  98 esvllsiqsLlae 110
                 +++++++ s++++
  CCE29977.1 116 RTAIVALRSFMET 128
                 ********99864 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.7e-05      0.15      49      98 ..      59     111 ..      10     125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
                 TT-CEEEEEEEEE-SSTTSS--EEEEEECC...SS-HHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx RF
         RWD  49 ekkkpslkleiklpeeYPeeaPiislsste...nlpkeqvksleekleelaee 98 
                 + ++  ++  i lp+ YP ++P +++ +++   + ++e ++s++ + ee+++ 
  CCE29977.1  59 DYSEGLYHGRIILPSAYPLRPPNFRFLTPNgrfEANREICLSISGHHEETWQP 111
                 455667778899******************999999********999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1914.47
//
Query:       CCE29978.1  [L=74]
Description: uncharacterized protein CPUR_03825 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 575.88
//
Query:       CCE29979.1  [L=156]
Description: uncharacterized protein CPUR_03826, partial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:01.14
# Mc/sec: 413.98
//
Query:       CCE29980.1  [L=572]
Description: related to cellular myosin heavy chain, type a [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.028   14.4   5.8      0.039   14.0   2.2    3.0  2  DUF465    Protein of unknown function (DUF465)
       0.24   11.1   6.4       0.19   11.4   1.5    2.4  2  DUF4201   Domain of unknown function (DUF4201)
       0.35    9.7   5.1      0.092   11.6   1.1    2.0  2  Spc7      Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> DUF465  Protein of unknown function (DUF465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.8   1.1e+04      30      39 ..     276     285 ..     275     285 .. 0.80
   2 ?   14.0   2.2   6.6e-06     0.039       3      46 ..     319     355 ..     317     356 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.8
                 HHHHHHHHHH CS
      DUF465  30 erLKkeKLeL 39 
                 +  K +KL+L
  CCE29980.1 276 AAIKERKLAL 285
                 567999**97 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 6.6e-06
                 HHHHHHHHHHHHHHHHHTT-.S-HHHHHHHHHHHHHHHHHHHHH CS
      DUF465   3 kLeeeHeeLdkeIhalearpvtddleierLKkeKLeLKDeIyrl 46 
                 +L e+++ +d+eI +le+       ++  L++++L L+D++ ++
  CCE29980.1 319 ELSERYNTVDHEISRLEE-------QLTGLRRQRLWLRDKMRDI 355
                 799*************96.......569************9887 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2     0.035   2.1e+02      44      97 ..     143     196 ..     121     201 .. 0.86
   2 ?   11.4   1.5   3.2e-05      0.19      49     134 ..     269     358 ..     265     363 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.035
     DUF4201  44 FeqlqienqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselk 97 
                 F+q ++e  +l+++ ++   +L r +++  ++v++l +l+ ++ ml+  +   k
  CCE29980.1 143 FNQSRAEYSSLSQRSNSAWLQLRRRQRTLENEVQQLLNLQSRRLMLDPSMDLNK 196
                 888888888888888888899999999999******999999999987776655 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.2e-05
     DUF4201  49 ienqalnkkIeernkeLkrlkkkttktvhalthlkeklh....mleselselkkelkekeerlaklrkelykvklerdklrkqneklkqq 134
                  e ++ +  I er+  L+ l++ + + + +l++l    +     l++el el +++++ + ++ +l+++l+ ++ +r +lr++ ++++ +
  CCE29980.1 269 EEKAHIVAAIKERKLALQHLHDLACRRSVILSELTTFDSdseePLARELGELSERYNTVDHEISRLEEQLTGLRRQRLWLRDKMRDIRGR 358
                 567788889***************999999999998877676699999**********************************99999865 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.24   1.4e+03     168     194 ..     153     179 ..     120     196 .. 0.57
   2 ?   11.6   1.1   1.5e-05     0.092     138     252 ..     254     368 ..     250     376 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.24
        Spc7 168 llpeleeekaeleeeleklqeaaeele 194
                 l ++ ++   +l+++ ++l++++++l 
  CCE29980.1 153 LSQRSNSAWLQLRRRQRTLENEVQQLL 179
                 333333333333333333333333333 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.5e-05
        Spc7 138 egLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleeki 236
                 +gL++ +e+  e  +e+k+++ +  +e + +l+ l+    + +  l +l ++  + e+    eL el e+ ++++ ei++++++l+ l++q+ +l++k+
  CCE29980.1 254 NGLRTAMESLKELCREEKAHIVAAIKERKLALQHLHDLACRRSVILSELTTFDSDSEEPLARELGELSERYNTVDHEISRLEEQLTGLRRQRLWLRDKM 352
                 5778888888888889999998888887777777777666666666666666667777889************************************** PP

        Spc7 237 eelkeqkseleeeiae 252
                  +++ +++ + +  ++
  CCE29980.1 353 RDIRGRREACLSGRRS 368
                 ******9999876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3717.76
//
Query:       CCE29981.1  [L=77]
Description: uncharacterized protein CPUR_03828 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-32  110.1   0.1      4e-32  109.9   0.1    1.1  1  DUF1748   Fungal protein of unknown function (DUF1748)


Domain annotation for each model (and alignments):
>> DUF1748  Fungal protein of unknown function (DUF1748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9   0.1   2.2e-36     4e-32       1      69 []       3      75 ..       3      75 .. 0.89

  Alignments for each domain:
  == domain 1  score: 109.9 bits;  conditional E-value: 2.2e-36
     DUF1748  1 lgrlthyafDavLvSvvlAgvkrttglt..lnsdki..tdkdikkwvdkYLgvGEwvmDqsvavmgsSswFer 69
                +grlthyafDavL+S++lAg+kr+tglt  +++d++  ++kdi+kw++kYL+vGEwvmDqsva++gsS +Fer
  CCE29981.1  3 VGRLTHYAFDAVLISAFLAGMKRSTGLTlsFRTDQVagENKDISKWMEKYLSVGEWVMDQSVAIAGSSGFFER 75
                59**************************444556652245********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 614.01
//
Query:       CCE29982.1  [L=460]
Description: probable serine-tRNA ligase, cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-33  116.8   0.0    1.5e-33  116.3   0.0    1.2  1  tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, 
    2.1e-16   60.1   5.7    4.1e-16   59.2   5.7    1.5  1  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
      0.003   17.3   0.2     0.0056   16.4   0.2    1.4  1  DUF5115       Domain of unknown function (DUF5115)


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0   2.5e-37   1.5e-33       1     179 []     225     413 ..     225     413 .. 0.89

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 2.5e-37
                   EEEEETT.SEEEEE-SSSHHHHHHHHHHHEEEBGGSSEEEEEEEEEEBTTTS....TBCTTTB-SEEEEE.EEEEEESGGGHHHHHHHHHHHHHHHH CS
                   xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   1 Ykledrn.dreyiLkPtneetfvelirdevlrskrLPlklyqiqtkyRdEks....dsrGLlRvreFhqk.dgyvfhaeaslddslrdlikaisrif 91 
                   Yk+ d + +++++L++t+e+++ + + de+l +k+LP+k++ ++t+yR+E+     d  G+ Rv++F++  +++    ++++++ + d+i   ++++
    CCE29982.1 225 YKVTDGDaKNDKYLIATSEQPISAFHADEWLVPKELPIKYAGYSTCYRREAGshgrDAWGIYRVHQFEKViEQFLLTDPEKSWEAFDDMIAISEEFY 321
                   7787655489*****************************************66887777********99637777777******************* PP

                   HHTT.SCEEEEEEGTTSCBTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTS...SEEEEEEEEEE.EEHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx.xxxxxxxxxxxxxx RF
  tRNA-synt_2b  92 erlglefraiielmsaksadykdkkefeavsesltkgieigtiqklgtrlserlgatvldenn...reksvimicaa.igveRllsaileqn 179
                   ++l l+++ +  + +a +  +++k ++ea+++ ++ + e+++++++ +++s++l++++  + +   ++k v+ ++ + ++++R++++ile++
    CCE29982.1 322 KSLQLPYQIVSIVSGALNNAASKKFDLEAWFPFQGEYKELVSCSNCTDYQSRALEIRFGTKTQtdiKKKYVHCLNSTlCATTRTMCCILENY 413
                   ******8877777999999*************************************653332222599*********999**********96 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   5.7   6.8e-20   4.1e-16       1     107 [.       1     111 [.       1     112 [. 0.96

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 6.8e-20
                   ---H.HHHHH...-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   1 MLDi.klire...npeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkel 93 
                   MLD+ ++i e   npe+++e++++R + ++ vde+++l +  r+++  + ++  + N ++k+Ig +kk+ke a++l++e  el +e kal +   e 
    CCE29982.1   1 MLDVvDFIIErggNPEKIRESQRRRYANVEIVDEIIALFDDHRKTNYSASQISGKINDVQKQIGAKKKAKESADDLLKEKIELEKEKKALVESAIEK 97 
                   7774378888999************************************************************************************ PP

                   HHHHHHHHCTS--- CS
  Seryl_tRNA_N  94 eaeleklllaiPNi 107
                   +a l+++l +++N 
    CCE29982.1  98 DALLKSKLKTVGNY 111
                   *************7 PP

>> DUF5115  Domain of unknown function (DUF5115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   9.3e-07    0.0056     190     235 ..      46      91 ..      29     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 9.3e-07
                 EEEGGGEETTEE-GGG-BBBSSTTB--SEEE-B-S.....S-B-EE CS
     DUF5115 190 ifpasavsGndidwnkalgaskdgDasaegllsytdddvkeagaiv 235
                  ++as +sG+  d++k +ga+k++ +sa++ll+ + +  ke +a+v
  CCE29982.1  46 NYSASQISGKINDVQKQIGAKKKAKESADDLLKEKIELEKEKKALV 91 
                 589*****************************99988878888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1112  (0.0620224); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3415.18
//
Query:       CCE29983.1  [L=723]
Description: uncharacterized protein CPUR_03830 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-47  161.1   1.9    1.2e-46  159.2   0.3    2.5  2  WAPL      Wings apart-like protein regulation of heterochroma


Domain annotation for each model (and alignments):
>> WAPL  Wings apart-like protein regulation of heterochromatin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   0.3   6.7e-51   1.2e-46       2     367 ..     287     620 ..     286     621 .. 0.92
   2 ?   -0.9   0.1     0.031   5.5e+02     202     251 ..     630     680 ..     625     718 .. 0.74

  Alignments for each domain:
  == domain 1  score: 159.2 bits;  conditional E-value: 6.7e-51
        WAPL   2 vrtlhElreaGenqefvdeveyildgle.egqpl.svRclSlisLaskcaspqfrrqlrahgiakrlfkalvdapdddspsLalaaaalfyvlssdshd 98 
                 ++++hElr+aG n++f+de +++l +++ +++ +  +R+++l++L +k ++++f r +r+h   +r+++ ++++ d +++++ + a+  f+ +++ +  
  CCE29983.1 287 IKSVHELRRAGLNNRFADELDDLLYRIGlPSSDVsTMRRNALCELVQKFQQKDFLRYFRDHASRDRIVRDVGKEMDPVCGFALITALICFLNSGPAPNL 385
                 89***************************999999**********************************************99999999999******* PP

        WAPL  99 adldrssgllrlllkLLesdtdivtlakdrktnlsksdqksivalveeklratktwsavtpnqlspksLaLetLlsltskkaggqfkeeLrelGgldvv 197
                 ++++ ++g+ +ll +LL +d+di+++a ++k n+s+++  s++++ + +l++ ++w+  +p+++sp++ aL+ +  l+s+     f         ld +
  CCE29983.1 386 LRQLANDGVGKLLARLLPVDDDIAVMATQKKLNMSRITRSSLREI-KMILQHLPIWHGYQPETISPRTAALQLM-ALLSR-----FA----DATLLDQI 473
                 *********************************************.**************************99.66677.....77....77777999 PP

        WAPL 198 vnvvatclvnllsssseeakkdtrsdetlsllerclsvLEnvtflseenqayllrlkkkqlvikliklLqdissqirlenhlaglssarckleeellll 296
                   +  + + +++       ++ +++  ++ +++ +l v    t      +  l  +++++  +++++lL+             ++ +++++   el+  
  CCE29983.1 474 LLESQRAIIDVA-------TWASEQG-SFDDVDYALTVFMLQTQSTAGVSPRLN-SDGGH-PTRISSLLS-------------KAIRRWPSARTELESA 549
                 999999999999.......5776666.899999999999999977777777777.77777.7*******8.............8889************ PP

        WAPL 297 alrlllnlTndnpsaceafgskkvGaveglisvalslfsnlspryspe..eks.lDllvlvLglliNLvekses 367
                 +l+l ln+Tn + + ++af  +++     l+ ++ + f ++ +++     e++ +D l l+Lg++iN++e+++s
  CCE29983.1 550 ILKLALNTTNTE-DEATAFDDPQL--SARLATCIGESFASVHATIRLGrlENErYDELLLMLGVMINIMEHCSS 620
                 ************.7777*******..***************8877766897777*****************997 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.031
        WAPL 202 atclvnllsssseea.kkdtrsdetlsllerclsvLEnvtflseenqayll 251
                 + +l +l +++++++ ++d+ ++++ls  +  lsvL  + +l+ +  ++  
  CCE29983.1 630 MGKLMKLWQDNQQSVaEADSVNKSKLSVALGYLSVLLGYMCLAGQAREHIE 680
                 5667777766666667999999999***********999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 5021.58
//
Query:       CCE29984.1  [L=1058]
Description: related to SPT5-transcription elongation protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-23   82.3   0.1    2.9e-23   81.5   0.1    1.4  1  Spt5-NGN  Early transcription elongation factor of RNA pol II
    9.9e-22   77.3  31.5    1.1e-16   61.2  21.0    5.0  3  CTD       Spt5 C-terminal nonapeptide repeat binding Spt4
    1.7e-20   73.8  10.9    1.7e-20   73.8  10.9    3.4  3  Spt5_N    Spt5 transcription elongation factor, acidic N-term
    9.4e-07   28.6  15.4     0.0022   17.9   1.5    4.6  5  KOW       KOW motif
    0.00075   19.7   0.0     0.0021   18.3   0.0    1.7  1  DUF3912   Protein of unknown function (DUF3912)


Domain annotation for each model (and alignments):
>> Spt5-NGN  Early transcription elongation factor of RNA pol II, NGN section
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.1   8.2e-27   2.9e-23       1      84 []     219     308 ..     219     308 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 8.2e-27
    Spt5-NGN   1 siwavkctagqErevalslmkkilelakken.leIkSvfapde....lkGyiyvEAdrkaaveralegipnvrgvv.qglvpikEvedll 84 
                 siwavkc++g+Erev+ls+mk+i+e++ +++ l I+++f++ +    +kG+iyvEA+r++ +  al+g+ nv++++ ++lv+ik++++ll
  CCE29984.1 219 SIWAVKCKEGKEREVVLSIMKRIEERIGTKDeLAITAAFERGGtqsvMKGFIYVEAQRQTYILVALDGMLNVYPRSkMTLVDIKDMPELL 308
                 69************************9999999******************************************9899********987 PP

>> CTD  Spt5 C-terminal nonapeptide repeat binding Spt4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   2.7   7.6e-11   2.7e-07      10      59 ..     819     863 ..     812     866 .. 0.89
   2 !   61.2  21.0   2.9e-20   1.1e-16       1      70 [.     855     941 ..     855     942 .. 0.91
   3 !   12.5  39.8   4.7e-05      0.17       1      63 [.     894     963 ..     894    1055 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 7.6e-11
         CTD  10 aggsrTPawgadgsrTpayggagsrtPawnagskTPahgaagsrTPaykt 59 
                 +gg+r Paw+  +srTp   g+ +r Paw  gs+TPa+   g rTPa+k 
  CCE29984.1 819 GGGDRLPAWQG-SSRTPMSAGNFDRIPAW--GSRTPAQA--GGRTPAWKA 863
                 6899*****75.9****************..********..*******65 PP

  == domain 2  score: 61.2 bits;  conditional E-value: 2.9e-20
         CTD   1 gsrTPawns..aggsrTPawgadgsrT........payggagsrtPawnagskTPahg...aagsrTPay.....ktawd.gsrTpayg 70 
                 g+rTPaw++  ++gsrTPaw  dgsrT        +ayg+ gsrtPaw++g++TPa g   + gsrTPay     +++w  gs+Tpa+g
  CCE29984.1 855 GGRTPAWKAqdYSGSRTPAWA-DGSRTvnpydgsrTAYGS-GSRTPAWQSGARTPAVGdafGPGSRTPAYtsaggSDSWTsGSKTPAWG 941
                 79*******999********5.7****************8.*****************9999********66666555559*******8 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 4.7e-05
         CTD   1 gsrTPawnsaggsrTPawgad...gsrTpayggagsrtPawnagskTPahgaagsrTPay..ktawd......g 63 
                 gsrTPaw+s  g rTPa+g+    gsrTpay +ag++ + w++gskTPa+g a++ TP+   +++w+      +
  CCE29984.1 894 GSRTPAWQS--GARTPAVGDAfgpGSRTPAYTSAGGSDS-WTSGSKTPAWG-ASAPTPGAgvNESWGytpgvsA 963
                 79*******..********98888*********988888.***********.999***9999999954444440 PP

>> Spt5_N  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   7.0         5   1.8e+04      14      54 ..      11      53 ..       8      68 .. 0.49
   2 ?  -11.2  35.4         5   1.8e+04       9      55 ..      71     116 ..      48     117 .. 0.63
   3 !   73.8  10.9   4.9e-24   1.7e-20       1      99 []     118     213 ..     118     213 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 5
                XXXXXXXXXXXXX.XXXXXXXXXXXXX....XXXXXXXXXXXXXX CS
      Spt5_N 14 eeeeeeeveggeddfiaeeeaeeeeed....serddrshreldrr 54
                + e+e++   ++ d    +e++ ++e+    +++  r+h++  ++
  CCE29984.1 11 DSEDEDDFHPAPADL-S-DEEPIDNESnppsNADLIREHDDAPKS 53
                367777777777773.3.334444444233322222333332222 PP

  == domain 2  score: -11.2 bits;  conditional E-value: 5
                 XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      Spt5_N   9 dddeeeeeeeeeveggeddfiaeeeaeeeeedserddrshreldrrr 55 
                 d+d+e+ +ee e+e+++dd+ +e+e++ee+ed ++++r++r+ drr+
  CCE29984.1  71 DEDNEQNNEEVEDEEEQDDD-EEDEEDEEDEDVQQGHRRKRRRDRRN 116
                 33334444444444444442.45666667777777777777777775 PP

  == domain 3  score: 73.8 bits;  conditional E-value: 4.9e-24
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X-GGGG- CS
      Spt5_N   1 FiddeAeVdddeeeeeeeeeveggeddfiaeeeaeeeeed.serddrshreldrrrqaeededaeeiaealeeRYgrsskkayrgeaeessevpqqlLL 98 
                 F+d+eAeVdd++e e+ee++++++e dfi++e+ ++ +e+ + +ddr+hreldrrr+ e++ dae++ae l++RYg+++ ++  g+++    vp++lLL
  CCE29984.1 118 FFDIEAEVDDEDEGEDEEKDGDEIE-DFIDNEHPDDIAESaRLDDDRRHRELDRRRELESSLDAEKQAEILRQRYGNRRPAKGFGDSAV---VPKRLLL 212
                 9***********9999999998886.578776555555555788******************************************999...******* PP

                 - CS
      Spt5_N  99 P 99 
                 P
  CCE29984.1 213 P 213
                 9 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3     0.035   1.3e+02       1      18 [.     477     494 ..     477     501 .. 0.95
   2 !   17.9   1.5   6.2e-07    0.0022       1      28 [.     530     558 ..     530     572 .. 0.84
   3 ?   -1.9   0.1       1.1   3.8e+03      19      30 ..     606     616 ..     603     618 .. 0.76
   4 ?   -2.0   0.0       1.1     4e+03      15      26 ..     665     676 ..     665     680 .. 0.79
   5 !   15.3   0.0   4.1e-06     0.015       3      31 ..     750     778 ..     748     779 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.035
                 TTSEEEESSSTTTTCEEE CS
         KOW   1 pGdhVkVvsGphkGktGk 18 
                 pGd+ +V sG  kG +Gk
  CCE29984.1 477 PGDIIEVYSGEQKGVVGK 494
                 8***************98 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 6.2e-07
                 TTSEEEESSS.TTTTCEEEEEEEETTTTE CS
         KOW   1 pGdhVkVvsG.phkGktGkVvkvdqhkvr 28 
                 +GdhVkV++G ++++++G+Vvk+ +++v+
  CCE29984.1 530 VGDHVKVIGGsKFRDEVGTVVKISEDRVT 558
                 7*********88***************44 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.1
                 EEEEETTTTEEE CS
         KOW  19 VvkvdqhkvrVf 30 
                 +vk+d++   V+
  CCE29984.1 606 IVKIDRES-LVV 616
                 9*****98.554 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.1
                 CEEEEEEEETTT CS
         KOW  15 ktGkVvkvdqhk 26 
                 ++Gk+ ++ +  
  CCE29984.1 665 RQGKIIHIHRSY 676
                 68******9876 PP

  == domain 5  score: 15.3 bits;  conditional E-value: 4.1e-06
                 SEEEESSSTTTTCEEEEEEEETTTTEEEE CS
         KOW   3 dhVkVvsGphkGktGkVvkvdqhkvrVfv 31 
                 ++ +V +Gp+kG  G+V++  +  +rV +
  CCE29984.1 750 QTAIVKRGPYKGLLGIVKDTTDTHARVEL 778
                 5789******************9999976 PP

>> DUF3912  Protein of unknown function (DUF3912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   5.9e-07    0.0021       6      48 ..     748     789 ..     741     806 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.9e-07
     DUF3912   6 lGqkvyvkdGPyrnklGvvkkkeqedddhftvv..iddqdidvel 48 
                 + q++ vk+GPy++ lG+vk      d h  v    +++ i+v +
  CCE29984.1 748 INQTAIVKRGPYKGLLGIVKD---TTDTHARVElhTKGKTITVPR 789
                 67******************9...333333333225666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1058 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1332  (0.074293); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                       169  (0.00942607); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.19u 0.31s 00:00:01.50 Elapsed: 00:00:00.49
# Mc/sec: 6437.13
//
Query:       CCE29985.1  [L=303]
Description: uncharacterized protein CPUR_03832 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1105  (0.061632); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2265.37
//
Query:       CCE29986.1  [L=1070]
Description: uncharacterized protein CPUR_03833 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1070 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 7326.21
//
Query:       CCE29987.1  [L=356]
Description: uncharacterized protein CPUR_03834 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-15   56.7   0.0    5.1e-15   55.4   0.0    1.7  2  B-block_TFIIIC  B-block binding subunit of TFIIIC
  ------ inclusion threshold ------
       0.03   14.2   0.0       0.16   11.9   0.0    2.1  2  MarR_2          MarR family


Domain annotation for each model (and alignments):
>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   5.7e-19   5.1e-15       3      73 ..      27      93 ..      25      95 .. 0.95
   2 ?   -3.6   0.0       1.5   1.3e+04      19      29 ..     235     245 ..     231     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 5.7e-19
  B-block_TFIIIC  3 dqfklLelIassRysGitqsdLakeskqdprslfyrlksLekkgLIvkqsiidsatkksistsllvlkkyf 73
                    +++ lL+ Ias + +Gi+q dL ++++qd+rs+++r++sL kkg+Ivk+++      ++++ts l+lk ++
      CCE29987.1 27 LEWHLLLGIASTKSQGILQGDLGRLVGQDKRSVPKRTDSLLKKGYIVKRTT----LVRGTKTSKLWLKSFA 93
                    6899***********************************************....999999******9997 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.5
  B-block_TFIIIC  19 itqsdLakesk 29 
                     ++q dL+++ +
      CCE29987.1 235 EWQADLSQVNG 245
                     79999998765 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.7e-05      0.16       5      55 ..      26      76 ..      23      80 .. 0.90
   2 ?   -1.3   0.0      0.24   2.2e+03      29      43 ..     109     123 ..     108     124 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
                HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrp 55
                + ++++L+ ++    + + +g+l r  g +k +v ++ + L ++G++++r+
  CCE29987.1 26 GLEWHLLLGIASTKSQGILQGDLGRLVGQDKRSVPKRTDSLLKKGYIVKRT 76
                568889999988888889******************************997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.24
                 HHHTSSHHHHHHHHH CS
      MarR_2  29 rrlglsksavsrilk 43 
                 + ++++++a++  l+
  CCE29987.1 109 EQMDITPQALTANLD 123
                 67899****999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2483.55
//
Query:       CCE29988.1  [L=467]
Description: probable SER33-3-phosphoglycerate dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-52  177.1   0.0      3e-52  176.6   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      8e-32  109.7   0.0    1.1e-31  109.3   0.0    1.2  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    8.5e-05   22.8   0.2    0.00026   21.2   0.0    1.9  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
     0.0089   16.5   0.0      0.032   14.7   0.0    2.0  2  XdhC_C         XdhC Rossmann domain
  ------ inclusion threshold ------
      0.024   14.2   0.0      0.084   12.4   0.0    1.9  2  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
      0.043   13.9   0.0      0.096   12.8   0.0    1.5  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
      0.048   13.5   0.0       0.13   12.1   0.0    1.8  1  ACT            ACT domain


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.6   0.0   1.2e-55     3e-52       2     178 .]     167     350 ..     166     350 .. 0.92

  Alignments for each domain:
  == domain 1  score: 176.6 bits;  conditional E-value: 1.2e-55
                   HHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE- CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslh 98 
                   a ++ l+r+l + ++e+++g+w ++ + +  e++gkt+GiiG+G+IG+++  +++a+gmkvi+yd+          +  ++ +l+ ll+e+D+v+lh
    CCE29988.1 167 AEIIILARQLGDRSSELHRGTW-NKVSAKCWEIRGKTLGIIGYGHIGSQLSVLAEAMGMKVIYYDVVTLMAL---GTSRQVPTLDCLLKEADFVTLH 259
                   668999****************.99999999************************************87443...2233566*************** PP

                   S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTC...........HHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  99 lpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplped...........spllelpnviltPHia 178
                   +p  petr++i+ +++++mk+g++liN++RG++vd  aL+eaL+sgk+ag alDv+ +ep+ +            + l++l+nviltPHi+
    CCE29988.1 260 VPDLPETRGMISTTQFEQMKPGSYLINASRGTVVDIPALVEALRSGKVAGTALDVYPNEPAANGdyftnnlndwaEDLRSLNNVILTPHIG 350
                   ***********************************************************9998877777776666688***********98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.0   4.1e-35   1.1e-31       1     126 [.      63     371 ..      63     379 .. 0.96

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 4.1e-35
                 EEEEST.CHHHHHHHHHTTEEEEEES.CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   1 vlileplreeelellkeegvevevkd.ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesv 98 
                 +l+le+++++++e+lk +g++ve  + +l++++l+ek++d++++ +rs+tk++++vl+++++L v +++++G+++vDl++a+++Gi+V+n p ++++sv
  CCE29988.1  63 ILLLENVNAAGQEILKGQGYQVEALKtSLPEDQLIEKIRDVHVIGIRSKTKLNERVLREAKNLLVAGCFCIGTNQVDLEYAARHGIAVFNSPFANSRSV 161
                 7899*************999**9999899999******************************************************************* PP

                 HHHH............................................................................................... CS
                 xxxx............................................................................................... RF
  2-Hacid_dh  99 AElt............................................................................................... 102
                 AEl+                                                                                               
  CCE29988.1 162 AELViaeiiilarqlgdrsselhrgtwnkvsakcweirgktlgiigyghigsqlsvlaeamgmkviyydvvtlmalgtsrqvptldcllkeadfvtlhv 260
                 *************************************************************************************************** PP

                 ..........................................................................................T-BHHHHHH CS
                 ..........................................................................................xxxxxxxxx RF
  2-Hacid_dh 103 ..........................................................................................aaTeeaqen 111
                                                                                                           ++Teeaq++
  CCE29988.1 261 pdlpetrgmisttqfeqmkpgsylinasrgtvvdipalvealrsgkvagtaldvypnepaangdyftnnlndwaedlrslnnviltphigGSTEEAQRA 359
                 **************************************************************************************************9 PP

                 HHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxx RF
  2-Hacid_dh 112 iaeeaaenlvaflkg 126
                 i++ a   lv+++++
  CCE29988.1 360 IVADA---LVRYINQ 371
                 87655...5555555 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     1e-07   0.00026       2     100 ..     203     298 ..     202     310 .. 0.86
   2 ?   -2.4   0.0       1.8   4.7e+03      85     106 ..     435     456 ..     418     462 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1e-07
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.akaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstsspe 95 
                    +g+iG G +Gs++    ++ g+kv+ y++      +l+a g  + + ++  l++++d+v + v++ ++++ +i+   +e++k+g++li+ s   + 
     CCE29988.1 203 LGIIGYGHIGSQLSVLAEAMGMKVIYYDVV-----TLMALGtSRQVPTLDCLLKEADFVTLHVPDLPETRGMISTtQFEQMKPGSYLINASRGTVV 293
                    79**************************76.....55555547889999*************************9899**********99976666 PP

                    HHHHH CS
  NAD_binding_2  96 dtrel 100
                    d   l
     CCE29988.1 294 DIPAL 298
                    65555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
                    EEEE-S---HHHHHHHHHHHHH CS
  NAD_binding_2  85 ilidgstsspedtrelakelke 106
                    ++ d s++ +e+ +++++ l++
     CCE29988.1 435 LMADISNVRFEEIKDITESLES 456
                    6778888888888888887765 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.8   7.2e+03      70      91 ..     101     122 ..      76     140 .. 0.63
   2 !   14.7   0.0   1.3e-05     0.032       2      67 ..     204     304 ..     203     312 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.8
                 SEEEESS-HHHHHHHCTTS.-- CS
      XdhC_C  70 ayigllGSrkkaarrlerlraa 91 
                 + + ++G r+k++  ++ lr+a
  CCE29988.1 101 RDVHVIGIRSKTKLNERVLREA 122
                 3455555555555555555444 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.3e-05
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG..................................-GGG-TT-SE.........-EEEE--S-HHHH CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa..................................tkerfpeade.........tavvvlthdhklD 57 
                  i+G gh++ +l  la+a+g++v+ +d  + +a                                  +        +         ++++ ++++   D
  CCE29988.1 204 GIIGYGHIGSQLSVLAEAMGMKVIYYDVVTLMAlgtsrqvptldcllkeadfvtlhvpdlpetrgmiS--------TtqfeqmkpgSYLINASRGTVVD 294
                 69****************************77788777777777777666666665555554444444........0555556669************* PP

                 HHHHHHHSSS CS
      XdhC_C  58 aealeaalrk 67 
                  +al +alr+
  CCE29988.1 295 IPALVEALRS 304
                 ******9963 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.97   2.5e+03       6      51 ..     102     150 ..      99     168 .. 0.57
   2 ?   12.4   0.0   3.3e-05     0.084       2      91 ..     198     284 ..     197     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.97
                 -EEEES-SHHHHHHHHHHHHTT--EEEEE...-TT-HHHHHHHHTT-EE CS
        IlvN   6 kiaviGyGsqGhaqalnlrdsgldvvvgl...regsksvkkAkeegfev 51 
                  + viG  s+ + + + lr+++  +v g     +++  ++ A ++g+ v
  CCE29988.1 102 DVHVIGIRSKTKLNERVLREAKNLLVAGCfciGTNQVDLEYAARHGIAV 150
                 5677777777777777777765444433211123333455555555555 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3.3e-05
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHHH.HHHHHHTGGG--TT-EE CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPDelqk.evyeeeiepnlkegkal 91 
                 ++gk++ +iGyG  G   +      g++v++        +  A  ++ +v t++ + k+ad+v++ +PD  ++  +++++  +++k g++l
  CCE29988.1 198 IRGKTLGIIGYGHIGSQLSVLAEAMGMKVIYYDVV----TLMALGTSRQVPTLDCLLKEADFVTLHVPDLPETrGMISTTQFEQMKPGSYL 284
                 789************9999999999****986544....458999999*********************6443034444445566666655 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.7e-05     0.096      21     108 ..     198     286 ..     192     306 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.7e-05
                    -TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEEEE-S....SSSSSB-HHHHCCS-TTEEEEE CS
  AdoHcyase_NAD  21 laGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadivvttt....Gnkdiitlehlkkmkddaivcn 108
                    + Gk+  ++GyG +G   +   +++G +vi  +v  + al +     +v tl+ ++k+ad+v         ++ +i++ ++++mk  + + n
     CCE29988.1 198 IRGKTLGIIGYGHIGSQLSVLAEAMGMKVIYYDVVTLMALGT---SRQVPTLDCLLKEADFVTLHVpdlpETRGMISTTQFEQMKPGSYLIN 286
                    78*****************************99987777765...56899999999999976543312225678888888888887766665 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     5e-05      0.13       6      28 ..     401     423 ..     396     458 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5e-05
                 EEESSTTHHHHHHHHHHHTTSEE CS
         ACT   6 gvpDrPGlLarvfgaladrgiNi 28 
                   ++ PG+L +v  +l+d+++  
  CCE29988.1 401 IHRNIPGVLRKVNEILGDHNVDK 423
                 56799***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3301.88
//
Query:       CCE29989.1  [L=366]
Description: uncharacterized protein CPUR_03836 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-07   30.7   0.0    5.4e-07   29.9   0.0    1.4  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0     3e-11   5.4e-07       2     142 ..     167     356 ..     166     357 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 3e-11
                      EEE--TT--HHHHHHHHHHHHHSSES...........EEEEEESSTHCSST-..SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHH........ CS
  CTP_transf_like   2 agGtFDpiHlGHlrlleqakklleed...........livgvpsdeppkkkk..kplasaeeRlemlelakevdevisvdpweltr........ 74 
                      +gGtFD +HlGH   l+ a  ll+             l+vg+ sde    k+  ++l+s + R + + ++   + ++s +p  +++        
       CCE29989.1 167 LGGTFDHLHLGHKLFLHAAVLLLNIRgtggksshqceLVVGISSDELLATKQyaEELQSWDVRARSVLHF--LSTLLSTSPAAPVQfeavvaet 258
                      69*********************999999999**************99999778****************..44444555555555555777** PP

                      ........................HHHHHTTTTEEEEEEEHHHHHHHHCHHHHHHHHHHHHHEEEEEE........HTTCEEEEEEECCTTTCS CS
  CTP_transf_like  75 ........................evlkklkpdklylvigadvledfsewkeleeilgnvklvvvsrp........ekqanvllkaekrtngiS 136
                                               ++k+ +++  +lv+++++ +  +  ++ ++  g+  l v++++        e+ ++ + +     ++iS
       CCE29989.1 259 kelharyrngsilvrcvdfhdvygPTVKEEAIE--ALVVSGETRSGGDLVNKKRHSQGWSMLNVYEINvldtvsdtESGKQKQGAVGHFGSKIS 350
                      *****************999999999999999*..******999999899999999999999999999********999*************** PP

                      HHHHHH CS
  CTP_transf_like 137 stkire 142
                      st+ir+
       CCE29989.1 351 STDIRR 356
                      *****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2826.68
//
Query:       CCE29990.1  [L=350]
Description: related to rRNA processing protein EBP2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-92  310.1  16.3    1.4e-92  310.1  16.3    1.3  2  Ebp2      Eukaryotic rRNA processing protein EBP2
  ------ inclusion threshold ------
       0.21   11.7   4.3        0.2   11.8   1.6    2.1  2  DUF1517   Protein of unknown function (DUF1517)
        3.4    7.9   6.0       0.32   11.2   0.6    2.1  2  VIT       Vault protein inter-alpha-trypsin domain


Domain annotation for each model (and alignments):
>> Ebp2  Eukaryotic rRNA processing protein EBP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1         1   6.2e+03     189     197 ..      27      39 ..      12      63 .. 0.47
   2 !  310.1  16.3   2.3e-96   1.4e-92       1     268 []      71     344 ..      71     344 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1
        Ebp2 189 dvaleeal....k 197
                 ++++e+++    +
  CCE29990.1  27 EIEMETKSlrgtN 39 
                 3333333322211 PP

  == domain 2  score: 310.1 bits;  conditional E-value: 2.3e-96
        Ebp2   1 eedeelsalekgelkegedvvpekkkkltinnkeaLkekleeikl...kklpwvetldltsk...paeiedvedDlkRElaFykqaleavkearkrlkk 93 
                 eed+++s+le+ + +++ed++p+  ++ltinn +aL+++l++i++   + + ++ ++++ s+     +i+dv+dDl+RElaFy+q+lea+k +r+ l++
  CCE29990.1  71 EEDIPVSDLEDLDDEDKEDLIPH--TRLTINNASALQAALDRIAIphnQRATFASHQSISSSkktADSIPDVSDDLQRELAFYSQCLEAAKIGRANLHA 167
                 69*********************..9********************9999***********987666779***************************** PP

        Ebp2  94 lgvpfkRPeDYFAEMvKsDehMekvkekLleeqaakkaseearkqRelkkfgKqvqveklqeRqkeKketlekikklkkkrkkldfle.eeeedefdva 191
                 +gv+f+RP+DYFAEM+K+D+hMekvk+kL+ee++akkas+eark+R+lkkfgKqvqv+klqeRqk K+etl+kik+lk+kr+++     ++e+d fdv+
  CCE29990.1 168 EGVSFSRPKDYFAEMIKEDAHMEKVKAKLIEEASAKKASAEARKLRDLKKFGKQVQVAKLQERQKAKRETLDKIKNLKRKRQESGGDMnTNEADIFDVS 266
                 *******************************************************************************999987666799******** PP

        Ebp2 192 leeal....kkkkkkkkkkkkgkknkkrkakdkKfGfGGkkrgsKsndaessadvsgfsakkkkkkkgkkkkkkRpgksrR 268
                 ++++l    ++k   ++++ ++++++kr++k++K+GfGGkkr++Ks+da ss d+sgf++kk    k+++k k+Rpgk+rR
  CCE29990.1 267 VDNELathsRRKGAPERGGLSSGPGAKRQKKNEKYGFGGKKRHAKSGDAVSSGDLSGFNTKKM---KAGAKIKSRPGKNRR 344
                 *9999665544555555667888999***********************************94...5678899*******9 PP

>> DUF1517  Protein of unknown function (DUF1517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.15   9.2e+02     130     146 ..      92     112 ..      16     134 .. 0.72
   2 ?   11.8   1.6   3.3e-05       0.2      53     106 ..     200     254 ..     178     275 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.15
     DUF1517 130 p....diasaedlkeaLqala 146
                 p    +i++a++l++aL ++a
  CCE29990.1  92 PhtrlTINNASALQAALDRIA 112
                 344446777777777777764 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.3e-05
     DUF1517  53 eywvyaasesdqfk.edsaeakfnqlsleerskfeeetlsnvngvkrkkeaskke 106
                 ++   a++e+++++  ++  ++++   l+er+k ++etl ++++ krk+++s  +
  CCE29990.1 200 ASAKKASAEARKLRdLKKFGKQVQVAKLQERQKAKRETLDKIKNLKRKRQESGGD 254
                 455567777777778888889999999******************9999988875 PP

>> VIT  Vault protein inter-alpha-trypsin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.6      0.98   5.8e+03      56      75 ..     191     210 ..     180     214 .. 0.73
   2 ?   11.2   0.6   5.3e-05      0.32      53      98 ..     219     269 ..     215     275 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.98
         VIT  56 vikgevkekeearkeyeeav 75 
                 ++k+++ e++ a+k   ea+
  CCE29990.1 191 KVKAKLIEEASAKKASAEAR 210
                 56777777788887777776 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 5.3e-05
         VIT  53 ggkvikgevkekeearkeyeeava.....qgktaglleqeepdvftvsvgn 98 
                 g++v +++++e+++a++e  + ++     ++++ g + ++e d+f vsv n
  CCE29990.1 219 GKQVQVAKLQERQKAKRETLDKIKnlkrkRQESGGDMNTNEADIFDVSVDN 269
                 668889************99999989988888999999*9*********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1568  (0.0874561); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2465.38
//
Query:       CCE29991.1  [L=638]
Description: related to samB [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-08   32.0  20.6    2.7e-07   30.5  20.6    1.8  1  zf-MYND   MYND finger


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5  20.6   1.5e-11   2.7e-07       3      38 .]     594     633 ..     590     633 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.5e-11
                 TT--..B-SC...E-TTTS-SEESSHHHHHHCHHHHCCCH CS
     zf-MYND   3 vCgk.aealk...kCagCksvfYCskeCqradwksHkteC 38 
                 +Cgk +e ++   kC +C++++YCskeCq+++w  H+++C
  CCE29991.1 594 QCGKwEEYTRqfaKCRRCRRTKYCSKECQKSAWAFHRHWC 633
                 7999844444566*************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1055  (0.0588432); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4670.70
//
Query:       CCE29992.1  [L=332]
Description: uncharacterized protein CPUR_03839 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-22   80.6   6.2      2e-22   79.9   6.2    1.4  1  PIG-Y     Phosphatidylinositol N-acetylglucosaminyltransferas


Domain annotation for each model (and alignments):
>> PIG-Y  Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   6.2   1.1e-26     2e-22       1      70 []     249     326 ..     249     326 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 1.1e-26
       PIG-Y   1 Gyallltsvllfivgmyavl..fskllrlgeaplsppvladd......ryYcylvpllipvtlvfvianWvGlKfFrh 70 
                 G+++l +++l+f++gm ++l  +++++++g++p++pp+l+dd      +yY  l++l+ ++++v+v+a WvG+K+Frh
  CCE29992.1 249 GWVVLTATWLVFVIGMGSCLnvWKWAWDVGKTPWAPPELEDDptlpidGYYPALIILTGVMAWVWVVAAWVGMKYFRH 326
                 9*****************************************9999999****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2492.12
//
Query:       CCE29993.1  [L=918]
Description: related to dynamin-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-44  150.3   0.0    9.3e-44  149.4   0.0    1.4  1  Dynamin_N  Dynamin family
    1.8e-12   47.1   0.0    1.8e-10   40.5   0.0    2.3  2  Dynamin_M  Dynamin central region
    4.1e-07   30.1   0.1    0.00029   20.9   0.0    3.6  2  MMR_HSR1   50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.043   14.2   1.4       0.25   11.7   0.1    2.7  2  AAA_16     AAA ATPase domain
      0.065   13.0   0.0       0.12   12.2   0.0    1.4  1  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
      0.093   13.0   0.0        0.9    9.8   0.0    2.4  2  AAA_28     AAA domain
       0.15   11.7   1.7       0.17   11.5   0.1    1.8  2  AAA_15     AAA ATPase domain
        1.9    7.4   3.6        1.8    7.6   0.1    2.4  3  IIGP       Interferon-inducible GTPase (IIGP)


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.0   4.2e-47   9.3e-44       1     168 []     243     417 ..     243     417 .. 0.97

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 4.2e-47
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---CCS...SSEEEE....T-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEE CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeaseravkeelkek....ekkledfsevreeieketekiagankgiskkvillki 95 
                 i+v+GsqSsGKSSvl+a++g+++lp+g+n++Trrp+el+l +++      ++ e++e+     ++++dfs +++++ + ++ ++   + +s+++i+l+i
  CCE29993.1 243 IVVIGSQSSGKSSVLEAIVGHEFLPKGSNMVTRRPIELTLVNTPA-----SDHEYGEFpdlgLRRISDFSSIQRTLAELNMAVS-DADCVSDDPIHLTI 335
                 89******************************************9.....6788888888899***************999999.999*********** PP

                 EETTS-SEEEEE---B-SSSGTTS.........HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE-C CS
   Dynamin_N  96 lsllvkgltlvDlPGldsvnkrdq.........elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvltkl 168
                 +s++v++l+l+DlPG+++v  ++q         el+++yi++ ++ila+++a++dl+ns al+ +r vdp+g+rti+v+tk+
  CCE29993.1 336 YSPNVPDLSLIDLPGYIQVVGNNQpiqlkqrisELCDKYIQPPNVILAISAADVDLANSTALRASRRVDPRGERTIGVITKM 417
                 ********************************************************************************95 PP

>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   8.1e-14   1.8e-10       4     130 ..     428     559 ..     426     583 .. 0.86
   2 ?    4.1   0.0      0.01        23     214     263 ..     640     691 ..     626     699 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 8.1e-14
   Dynamin_M   4 ilenkvipLklGYvgVvnR..sqk...dInkkksieealkkEkaFFeshpa.y.rkladkaGtpyLakkLnqiLvehIrkslPelkkkineklqkleke 95 
                 +l+ k++pL+lGYvgVv +  s +    +  +  +++ +k+E++FF+shp  +  +   ++Gt  L kkL ++L +  + sl +  + i+++l++++ e
  CCE29993.1 428 LLNDKQYPLRLGYVGVVSKapSAQglfKVGPSNLMAAITKHENSFFSSHPLeFgPDAGVNVGTTTLRKKLMHVLEQTMSASLQTTSDSIRQELEEATYE 526
                 58999*************9665552224555677899999**********736888899**************************************** PP

   Dynamin_M  96 leelgeskpsdeektklllqlitkfkedfkklieG 130
                  +   +++p   +++++l + +  fk++fkk +e 
  CCE29993.1 527 FKVQYNDRPL--SAESYLAESLDTFKHSFKKFTEE 559
                 **99998988..8*****************99875 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.01
   Dynamin_M 214 Vyeelekivek.lek.elkrFpnLreeikevvedllreqeeptkemienlie 263
                 V + l + + + l++ +++  p  r++i e+ +++l+e+   t +++en i+
  CCE29993.1 640 VASSLHDHLDNlLSNsNFATHPFARQAILEAASTILKEKFYSTSDQVENCIK 691
                 55556666666444459********************************996 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.3e-07   0.00029       2      72 ..     243     369 ..     242     402 .. 0.83
   2 ?    3.1   0.0     0.042        94       8      44 ..     486     523 ..     485     537 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.3e-07
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE..................................................... CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke..................................................... 47 
                 ++++G   +GKS+++ a++g +   +  + +Tr ++e ++   +++                                                     
  CCE29993.1 243 IVVIGSQSSGKSSVLEAIVGHEFLPKGSNMVTRRPIELTLV--NTPasdheygefpdlglrrisdfssiqrtlaelnmavsdadcvsddpihltiyspn 339
                 89*********************************999987..32334677888899999999999999999999999999999999999999999999 PP

                 ...EEEEECGGCSS..HHHHHHHHHHHHHH CS
    MMR_HSR1  48 ...ielvDtpGlie..gaseekglgkafla 72 
                    + l+D+pG i+  g+++  +l++++ +
  CCE29993.1 340 vpdLSLIDLPGYIQvvGNNQPIQLKQRISE 369
                 999********7655566666666666654 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.042
                 TTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEET CS
    MMR_HSR1   8 pNvGKStLinaltge.kaivsdkpgtTrdinegrvklk 44 
                  NvG +tL ++l+   +  +s+  +tT d ++ ++++ 
  CCE29993.1 486 VNVGTTTLRKKLMHVlEQTMSASLQTTSDSIRQELEEA 523
                 5*************967888*********999988843 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00011      0.25      11      44 ..     224     260 ..     217     276 .. 0.87
   2 ?    0.2   0.2      0.38   8.6e+02      87     129 ..     608     654 ..     565     757 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
      AAA_16  11 qLlsalervrsgrp...elvllsGesGvGKsslvrel 44 
                 +++s+l++v ++++   ++++++G + +GKss+++++
  CCE29993.1 224 EIRSILQKVGQSSSlnlPSIVVIGSQSSGKSSVLEAI 260
                 46778888888888888*****************986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.38
      AAA_16  87 deaesaeleawrekleealaavpelagaea......srllellkrllal 129
                 ++  + e  +wr++l+++++a  +l           s+l+++l +ll+ 
  CCE29993.1 608 QA--DPESLYWRRQLDASASALTKLGVGRLattvvaSSLHDHLDNLLSN 654
                 33..556788888888888844443333334555567777777777743 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.2e-05      0.12       2      23 ..     243     264 ..     242     301 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.2e-05
      AAA_21   2 nvliGpNgsGKSnLLdaldlla 23 
                  v+iG  +sGKS++L+a+ +  
  CCE29993.1 243 IVVIGSQSSGKSSVLEAIVGHE 264
                 59****************7653 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0004       0.9       2      22 ..     243     263 ..     242     326 .. 0.78
   2 ?   -0.3   0.0      0.51   1.1e+03      22      66 ..     660     706 ..     647     716 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0004
      AAA_28   2 ivitGgestGKTtlleaLaar 22 
                 iv++G +s+GK+++lea+  +
  CCE29993.1 243 IVVIGSQSSGKSSVLEAIVGH 263
                 9***************99766 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.51
      AAA_28  22 r..gypvvpEaareileeklakgedalpwvedllafaervleeqlee 66 
                 +    + + Eaa +il+ek  ++ d+ +   ++ +f++ v+e + ++
  CCE29993.1 660 HpfARQAILEAASTILKEKFYSTSDQVENCIKPFKFEIDVEEREWSQ 706
                 454567889***********999998887667788888888877655 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   7.8e-05      0.17      26      43 ..     243     260 ..     234     263 .. 0.87
   2 ?   -2.3   0.2       1.2   2.8e+03     186     227 ..     516     558 ..     490     584 .. 0.42

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.8e-05
      AAA_15  26 tvliGkNnsGKSsileal 43 
                  v+iG ++sGKSs+lea+
  CCE29993.1 243 IVVIGSQSSGKSSVLEAI 260
                 699**************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
      AAA_15 186 lknvlksaiiklllisakRnvsd.edsekkssllgklkekile 227
                 + + l++a +++++  ++R  s  +   ++ +++   ++k+ e
  CCE29993.1 516 IRQELEEATYEFKVQYNDRPLSAeSYLAESLDTFKHSFKKFTE 558
                 2233333333333333333333311112222222222222222 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1   0.00079       1.8       2      61 ..     207     264 ..     206     287 .. 0.85
   2 ?   -3.4   0.1       1.7   3.8e+03      82      95 ..     337     350 ..     334     352 .. 0.89
   3 ?   -0.2   0.1      0.18   4.1e+02     222     287 ..     494     561 ..     490     586 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00079
                 HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHT--EEEEEEESTTSSHHHHHHHHTT--TT CS
        IIGP   2 eevikliekalkegnlqkvvsiikeaikeiesaklkiavtGdsGnGkssFinaLRliGhe 61 
                 eev ++ + ++   ++ ++ si++++ ++ + +  +i+v+G   +Gkss + a+  +Ghe
  CCE29993.1 207 EEVARDDQMMVLTKKMIEIRSILQKVGQSSSLNLPSIVVIGSQSSGKSSVLEAI--VGHE 264
                 66777777777788889999999999999999999****************995..7887 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.7
                 -SS-TTEEEEEE-- CS
        IIGP  82 sskfPnvvlWDLPG 95 
                 s+++P   l DLPG
  CCE29993.1 337 SPNVPDLSLIDLPG 350
                 79***********9 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.18
                 HHHHHHHS---SHHHHHHHHHHHHHHHHH..HHHHT--BSS-CCCS.S--HHHHHHHHHHHHHHHHHTT CS
        IIGP 222 rhefleslsnvtdkvieekreslkqkial..ealkaalvsiipllt.llkesdlenleeslklyrkvFG 287
                 r++++++l++++ +++++  +s++q++ +   ++k +  +  pl +     + l++ ++s+k + + FG
  CCE29993.1 494 RKKLMHVLEQTMSASLQTTSDSIRQELEEatYEFKVQY-NDRPLSAeSYLAESLDTFKHSFKKFTEEFG 561
                 67889999999999999999999999987334555554.555654313447888899999999998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.39
# Mc/sec: 7044.25
//
Query:       CCE29994.1  [L=836]
Description: related to SPB1-required for ribosome synthesis,putative methylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-86  288.4  19.0    3.1e-86  288.4  19.0    3.0  3  Spb1_C           Spb1 C-terminal domain
    1.6e-55  188.0   0.0    2.9e-55  187.1   0.0    1.5  1  FtsJ             FtsJ-like methyltransferase
      8e-51  172.1  11.8      8e-51  172.1  11.8    4.9  6  DUF3381          Domain of unknown function (DUF3381)
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.029   14.6   0.0    1.7  1  E1_FCCH          Ubiquitin-activating enzyme E1 FCCH domain
      0.033   14.4   0.1      0.033   14.4   0.1    2.6  2  RGCC             Response gene to complement 32 protein famil
       0.07   12.8   2.0      0.095   12.3   0.0    2.1  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
      0.092   12.6   0.0       0.22   11.4   0.0    1.6  1  Methyltransf_23  Methyltransferase domain
        6.3    5.1   5.5        2.6    6.4   0.1    2.5  3  CBP_BcsG         Cellulose biosynthesis protein BcsG


Domain annotation for each model (and alignments):
>> Spb1_C  Spb1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   4.5       3.3   7.4e+03     128     148 ..     364     384 ..     335     400 .. 0.54
   2 ?   -1.5   1.7      0.74   1.7e+03       3      33 ..     500     530 ..     472     558 .. 0.70
   3 !  288.4  19.0   1.4e-89   3.1e-86       4     210 ..     625     831 ..     618     832 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.3
      Spb1_C 128 leklkkkaeliaededlseke 148
                 l+k+k+k ++  ++e  +e+e
  CCE29994.1 364 LQKMKEKENTRKKKERRKENE 384
                 222222222222222222222 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.74
      Spb1_C   3 eedddfevvpaeekeekdsddeeeeedekid 33 
                 + dd++e  +a+e++ek+++++ eee+++ d
  CCE29994.1 500 RGDDEWEGLSANEAAEKSESSDLEEENDSSD 530
                 4567777777776666666655554444222 PP

  == domain 3  score: 288.4 bits;  conditional E-value: 1.4e-89
      Spb1_C   4 edddfevvpaeekeekdsddeeeeedekidiltaealalaqqlatgkktkedlidegfnryafndkdgLPeWFldDEkkhskpekpitkeavaaikekl 102
                 + ddfevv+++++++ ++d++  + + +idi+taea++la+qlatg+kt++d+id+g+nr+af+dkdgLPeWF+dDE kh+kp+kpitk+a++aikekl
  CCE29994.1 625 SGDDFEVVKNDNEKDWEEDKRLPDGKLDIDIITAEAMTLAHQLATGQKTSHDMIDDGYNRHAFRDKDGLPEWFMDDEGKHDKPQKPITKAAANAIKEKL 723
                 568899998777777666555555555************************************************************************ PP

      Spb1_C 103 ralnarpiKKVaEAkaRKklkaakkleklkkkaeliaededlsekeKakqieklmkkaakkkkkkkvkvvvakkankglsgrpkgvkgkykmVDkrmKk 201
                 ra+narpiKKV+EA+aRKk+kaa++leklkkk++++a+de+++ekeKa++i+kl++kaa+kk+ ++ k+v+a++ n+g++grpkgv+g+y+mVD+rmKk
  CCE29994.1 724 RAFNARPIKKVREAQARKKFKAAQRLEKLKKKSDMLANDEGMTEKEKADSIAKLLSKAARKKPSQPAKLVIARGLNRGVQGRPKGVRGRYRMVDARMKK 822
                 *************************************************************************************************** PP

      Spb1_C 202 dlRalkria 210
                 +lRa+kr a
  CCE29994.1 823 ELRAQKRGA 831
                 ******965 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1   0.0   1.3e-58   2.9e-55       1     177 []      24     200 ..      24     200 .. 0.99

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 1.3e-58
                 CCCCHHHHHHHHHHHHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHHTTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE--S-SS CS
        FtsJ   1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvdlvvsDgapdv 99 
                 yr+R+a+KL+++++k++++++ k  +Dl+aaPG+w+qv+++ +  ++ +v+vDl p++p+p+v t+q dit+++ + +i+++l+  k+d v++Dgap+v
  CCE29994.1  24 YRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEVMPVDSLIVGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKTWKADTVLHDGAPNV 122
                 9****************99************************999***************************************************** PP

                 -CHHHHHHHHHCCCCHHHHCCHCCCCECCCEEEECCCHCCCHHHHHHHHHCCEEEEEEEE-SS--CCG-EEEEEEEEC CS
        FtsJ 100 sgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
                    +++d+++q++L+l++++la++ l +ggtfv+k+fr+++ + ll  l+++F kv+ +kP+ssr+ s+e+f+vcrgf
  CCE29994.1 123 GTAWVQDSFNQAELALQSMKLATEFLIEGGTFVTKVFRSKDYNPLLWVLNQLFTKVEATKPPSSRNVSAEIFVVCRGF 200
                 ****************************************************************************98 PP

>> DUF3381  Domain of unknown function (DUF3381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.1  11.8   3.6e-54     8e-51       1     164 [.     234     391 ..     234     392 .. 0.92
   2 ?   -1.2   4.9       0.7   1.6e+03     117     162 ..     453     498 ..     440     506 .. 0.46
   3 ?   -4.7   6.3         8   1.8e+04     105     131 ..     496     526 ..     480     549 .. 0.43
   4 ?   -2.2   1.3       1.4   3.2e+03      99     119 ..     608     630 ..     596     659 .. 0.40
   5 ?   -2.4   5.6       1.6   3.6e+03      88     145 ..     733     783 ..     713     791 .. 0.49
   6 ?   -6.3   4.9         8   1.8e+04     142     159 ..     818     835 ..     812     836 .] 0.59

  Alignments for each domain:
  == domain 1  score: 172.1 bits;  conditional E-value: 3.6e-54
                 XXXXXXXXXXXXXXXXXX--EEEHHHHHT-----HHHHH-SEEE--S....HHHHH.HHSSSSS-SSHHHHHH-SSS--HHHHHHHHHHHHHHHHH-XX CS
     DUF3381   1 pekkkrkreGYeegdytlykelsvseFiksedpielLgkaneitfdk....eelkekilkhpktteEikelckDLkVLGkkdlkkLLkWrkklrkelgl 95 
                 pe kkrkr+GYeegdy+++ke+s+seFi+++dpi++Lg++n+++f++    + + ++++k+p+tt+Ei++ c+DLkVLG+kd+k LL+Wr+k+r+ +gl
  CCE29994.1 234 PEIKKRKRDGYEEGDYIQFKEVSASEFIQTTDPIKILGSSNKLSFEQppngDVALAALDKLPETTDEIRTSCRDLKVLGRKDFKLLLRWRLKVRDIFGL 332
                 688***********************************************9777777*****************************************9 PP

                 XX.................XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3381  96 eekkekeekeeeeeedeeeeeeeeeeaeeeeldeeeeiekeleelkeeekkkkKrekkkankkkqkeiq 164
                 ++k++k+e+           ++ ee+a++e++dee +i++el+++ke+e+ +kK+e++k+n+kkq++ +
  CCE29994.1 333 STKEKKNEEP----------TAGEEVAQVEPMDEELQIQEELQKMKEKENTRKKKERRKENEKKQRDVI 391
                 9984433332..........245678999*************************************976 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.7
                 XXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3381 117 eeeeeaeeeeldeeeeiekeleelkeeekkkkKrekkkankkkqke 162
                 e+  + e+e ++e + +e+el+++ ++ +++k     k + kk++e
  CCE29994.1 453 EKAAVDESETDEEGDLLERELDSMYNDYRERKAEADAKYRAKKARE 498
                 2333334444444455566665555544444433333333333333 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 8
                 ...............XXXXX..XXXXXXXXXX CS
     DUF3381 105 eeeeeedee.....eeeeeeeeaeeeeldeee 131
                 + ee  d+e       +e+ e++e+++l+ee+
  CCE29994.1 496 AREERGDDEweglsA-NEAAEKSESSDLEEEN 526
                 111111111322220.2233333333333322 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.4
                 ....................XXXXX CS
     DUF3381  99 kekeekeeeeeedee....eeeeee 119
                 k+ke+   +++ +++    +  + e
  CCE29994.1 608 KKKEDIRRKTQRSDKvdsgD--DFE 630
                 22222222222222222211..111 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 1.6
                 HHHHH-XXXX...................X..XXXX..XXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3381  88 klrkelgleekkekeekeeeeeedee..ee..eeeeeeaeeeeldeeeeiekeleelkeeek 145
                 k+r++ ++++            + ++  e+  ++++  a++e ++e+e+ ++  + l++  +
  CCE29994.1 733 KVREAQARKKF-----------KAAQrlEKlkKKSDMLANDEGMTEKEKADSIAKLLSKAAR 783
                 33333322222...........1111111122445555666666665555443333333333 PP

  == domain 6  score: -6.3 bits;  conditional E-value: 8
                 XXXXXXXXXXXXXXXXXX CS
     DUF3381 142 eeekkkkKrekkkankkk 159
                 ++ kk+++ +k+ a+kkk
  CCE29994.1 818 ARMKKELRAQKRGAQKKK 835
                 455566666666666655 PP

>> E1_FCCH  Ubiquitin-activating enzyme E1 FCCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.3e-05     0.029      11      41 ..     239     269 ..     235     279 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
                 T--S---TT-EEEEES-BT-CCGGGS--EE- CS
     E1_FCCH  11 esrhgledgDyVtFseveGmtelNgkeprki 41 
                  +r g+e+gDy++F+ev+  + +  ++p+ki
  CCE29994.1 239 RKRDGYEEGDYIQFKEVSASEFIQTTDPIKI 269
                 5789**************9999999987666 PP

>> RGCC  Response gene to complement 32 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   4.5      0.85   1.9e+03       3      91 ..     440     526 ..     438     555 .. 0.62
   2 ?   14.4   0.1   1.5e-05     0.033      21      83 ..     712     775 ..     700     791 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.85
        RGCC   3 spkvkraaaeaaaaapallaaeaddLsdvL.cefdavledfesPvekrhfrYeehLkelkrrssasvsD.sGisdsesadslnrsslsfsd 91 
                 +p++++a+++ ++ + a++  e d+  d+L +e d + +d+     +   +Y     +  r       +  G+s  e+a+ +  s l+  +
  CCE29994.1 440 PPSAQPATTASGSEKAAVDESETDEEGDLLeRELDSMYNDYRERKAEADAKYRAKKAREER----GDDEwEGLSANEAAEKSESSDLEEEN 526
                 577888888888888999999999999999679*******986666656666544333333....32234566655555555444443322 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.5e-05
        RGCC  21 laaeaddLsdvLcefdav.ledfesPvekrhfrYeehLkelkrrssasvsDsGisdsesadsln 83 
                   a+a+ + + L+ f+a  ++       +++f+  + L++lk++s     D G+ + e ads+ 
  CCE29994.1 712 TKAAANAIKEKLRAFNARpIKKVREAQARKKFKAAQRLEKLKKKSDMLANDEGMTEKEKADSIA 775
                 556677788888888874377888777888*******************************986 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.3e-05     0.095       9      42 ..      45      78 ..      41     127 .. 0.83
   2 ?   -1.9   0.9      0.97   2.2e+03     141     179 ..     351     388 ..     349     400 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.3e-05
                     T-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESS CS
  Methyltr_RsmB-F  9 eetilDlcaaPGgKTthiaelmknkgtvvAvdan 42
                      + +lDlcaaPG+     ae+m   + +v vd  
       CCE29994.1 45 SKVLLDLCAAPGSWCQVAAEVMPVDSLIVGVDLA 78
                     5679*************************99975 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.97
                      -STTTTHHHHHHHHHH-TTEEEESSBSTTSTTSSECEEC CS
  Methyltr_RsmB-F 141 vlveEneevieeaLkkredvelvetelsepkglklgeea 179
                      v++ ++e +i+e L+k ++ e +    +e ++ + +++ 
       CCE29994.1 351 VEPMDEELQIQEELQKMKEKENTRK-KKERRKENEKKQR 388
                      6778899999999999977766555.4444444444444 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.8e-05      0.22       7      57 ..      27      82 ..      22     140 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.8e-05
  Methyltransf_23  7 eelsdklerllpk..lraggrvLdiGcGtGillevlrengf...svtgvDlspeav 57
                     +++ ++++   ++  l++++ +Ld+ ++ G++++v++e       ++gvDl p++ 
       CCE29994.1 27 RAAFKLIQLNKKYgfLEKSKVLLDLCAAPGSWCQVAAEVMPvdsLIVGVDLAPIKP 82
                     5555555544444558999*****************99965674588****98743 PP

>> CBP_BcsG  Cellulose biosynthesis protein BcsG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0011       2.6     142     213 ..     334     405 ..     321     409 .. 0.83
   2 ?   -0.8   0.1      0.17   3.8e+02     140     193 ..     442     495 ..     428     497 .. 0.77
   3 ?   -0.6   0.1      0.15   3.4e+02     276     329 ..     680     735 ..     675     763 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0011
    CBP_BcsG 142 akaaeaeaakaaaaaaqaaeansa.nldealeaFyekekkrkvefpaklaadaqpFdilvlnicSlswdDlea 213
                 +k++++e+ +a ++ aq ++++++ +++e l++  eke++rk +  +k ++++++ d++ ++++ ++  D+ +
  CCE29994.1 334 TKEKKNEEPTAGEEVAQVEPMDEElQIQEELQKMKEKENTRKKKERRK-ENEKKQRDVIRMQLNMIAPMDIGM 405
                 45666777788888889998888779***************9998888.5666679*******9999999866 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.17
    CBP_BcsG 140 aaakaaeaeaakaaaaaaqaaeansanldealeaFyekekkrkvefpaklaada 193
                 +a++a++a+ +++aa ++++++ + + l++ l++ y++ ++rk+e  ak++a++
  CCE29994.1 442 SAQPATTASGSEKAAVDESETDEEGDLLERELDSMYNDYRERKAEADAKYRAKK 495
                 456666677777777777777778889999999999999999999988877765 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.15
    CBP_BcsG 276 lGfkeellldhdGkfdnflkelrekgglkaplldq..eklavalkafdgspiyddl 329
                  G++++ + d+dG  + f+++  ++ + ++p+++   + ++ +l+af+  pi++  
  CCE29994.1 680 DGYNRHAFRDKDGLPEWFMDDEGKHDKPQKPITKAaaNAIKEKLRAFNARPIKKVR 735
                 599999999999999999999999999999998763367899999****9998644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2275  (0.126889); expected 358.6 (0.02)
Passed bias filter:                      719  (0.0401026); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.46
# Mc/sec: 5456.37
//
Query:       CCE29995.1  [L=281]
Description: uncharacterized protein CPUR_03842 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.3e-55  186.2   0.0    9.4e-55  186.1   0.0    1.0  1  Cupin_8       Cupin-like domain
      0.001   18.6   0.1       0.15   11.5   0.1    2.3  2  Cupin_4       Cupin superfamily protein
  ------ inclusion threshold ------
      0.014   15.1   0.2      0.081   12.6   0.0    1.9  2  Fe_bilin_red  Ferredoxin-dependent bilin reductase


Domain annotation for each model (and alignments):
>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.1   0.0   1.6e-58   9.4e-55       4     228 ..      36     281 .]      32     281 .] 0.87

  Alignments for each domain:
  == domain 1  score: 186.1 bits;  conditional E-value: 1.6e-58
     Cupin_8   4 ffreyvakskPviikgalkdwpalqkwtddeylleylkekaedvkvsvektpdgeadsf...keneelkfvkpeeeemtfkdfldelearrdtrsep.. 97 
                 +f++yv++++P++i+g ++ w+a+++w+      +ylk++   + v+v++tp g+ad+     e+   +  kp+ee ++f++fl +l +++++ + p  
  CCE29995.1  36 EFMRYVSRNTPFVIRGGASSWKATRQWNA-----AYLKKALAAQCVNVAVTPHGNADAPtfsPEHAVTVLSKPHEESQPFDEFLAYLIQQEKSADSPqa 129
                 579************************96.....8999999999999999999999988544334456677899***********99888887776678 PP

     Cupin_8  98 ....yaylqnanlasefpelked..sdlpfateafgkkpeavnlWlGnsasvsslHkDhyeNlycvvrGrKkftLfpPsdapflyea............ 178
                     ya++qn+n+++e++ l  d  +d++fa+ a++k+ eavnlW+Gns+sv+++HkD +eN+++++ GrK+f+L+pP + p+++ea            
  CCE29995.1 130 tevrYAQTQNDNFRDEYACLLPDaqQDIAFARIALQKSLEAVNLWIGNSRSVTATHKDNFENIFVQIVGRKHFVLLPPICHPCMNEAllkpatykrddq 228
                 8888****************98888***********************************************************999666554444444 PP

     Cupin_8 179 ....slsptedgtv........vssvdveepdlekfprlkdakkalevtlnaGevLylPalW 228
                                       +  +d+++p+ + +p+ k a k++++tln+G++LylPa+W
  CCE29995.1 229 glsiR--------LdegadlvpFAIWDPDNPQVNPTPLSKFA-KPMRITLNPGDMLYLPAMW 281
                 44442........044444444999*****************.******************* PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0     0.002        12     112     151 ..     167     205 ..     103     232 .. 0.78
   2 !   11.5   0.1   2.6e-05      0.15     169     191 ..     258     280 ..     246     281 .] 0.73

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.002
                 S-EEEEEEEE-TTBBSS-SEE-SSEEEEEEEEC-EEEEEE CS
     Cupin_4 112 slvgsnvYatpggsqgvgpHyDdyDVfllQleGrkrWrvy 151
                 sl  +n+++  +  +  + H D+ +   +Q+ Grk+  + 
  CCE29995.1 167 SLEAVNLWIGNSR-SVTATHKDNFENIFVQIVGRKHFVLL 205
                 4667799999888.44578****************97665 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 2.6e-05
                 CG--S-SEEEEE-TT-EEEE-TT CS
     Cupin_4 169 ldefepvedfvLepGDlLYlPrg 191
                 l++f++   + L+pGD+LYlP  
  CCE29995.1 258 LSKFAKPMRITLNPGDMLYLPAM 280
                 45566666789**********75 PP

>> Fe_bilin_red  Ferredoxin-dependent bilin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05     0.081      19      80 ..      33      92 ..      19     102 .. 0.84
   2 ?    0.0   0.2     0.093   5.6e+02     169     200 ..     113     144 ..     101     146 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
                  -GHHHCEEEEECTTEEEEEEEEEEEESSEEEEEEEEEEETTTEEEEEEEEEE-CCCT--EEE CS
  Fe_bilin_red 19 vpedleeveskkegekvtieneayksrklRklrlelvdageklqvlncviypapeydlPlfG 80
                   p ++ + +s++    ++i+  a + +  R++ +++++   ++q  n+++ p+ ++d+P f 
    CCE29995.1 33 SPLEFMRYVSRNT--PFVIRGGASSWKATRQWNAAYLKKALAAQCVNVAVTPHGNADAPTFS 92
                  4445666666666..8999999999**********************************995 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.093
                   HHHHHHH--B--HHHHHHHHHHHHHHHHHHHC CS
  Fe_bilin_red 169 ylqlldeaepeaeaeeeaevleaqkaYdayqa 200
                   +l++l ++e++a++ ++ ev+ aq + d+++ 
    CCE29995.1 113 FLAYLIQQEKSADSPQATEVRYAQTQNDNFRD 144
                   56666777888888888999999988887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2006.63
//
Query:       CCE29996.1  [L=1026]
Description: related to SREBP cleavage activating protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-36  125.8   9.0    2.7e-36  124.7   9.0    1.5  1  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ
      4e-09   35.1   4.5      7e-09   34.3   4.5    1.4  1  Patched         Patched family


Domain annotation for each model (and alignments):
>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   9.0     3e-40   2.7e-36       2     143 ..     218     359 ..     217     367 .. 0.96

  Alignments for each domain:
  == domain 1  score: 124.7 bits;  conditional E-value: 3e-40
                     HHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHHHTTTCHHHHHHHHHHHHCCCCHHCCCHHHHHH CS
  Sterol-sensing   2 vkskfgLglagviivllsvasslgllaylgltltliilevlPflvlavgvdnifvlvkavqrtsrsldeseriaealgevgpsilltsltellal 96 
                     vks+fgL +++v+++++s++ss++++a+++l+l+ i+   +P +vl ++++n+++l++av+ t+ + +  +ri+ a+g++g  +l++s++++l+l
      CCE29996.1 218 VKSRFGLIITIVAQIAFSIMSSFTICAIFNLDLSRIPRAAYPLVVLSMSLENTLRLINAVILTPFEDSTGNRIGSAFGQTGLTALASSFQNVLIL 312
                     9********************************************************************************************** PP

                     H.HHHHCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCT CS
  Sterol-sensing  97 l.lgaltdvpavqeFclfaavavlvdFllqitfFvavLsldirreese 143
                     + l+   + p+v++Fc+faava+++dF++  tfF++vLs+d+rr+e +
      CCE29996.1 313 IgLS-RLVSPGVSAFCVFAAVAIIFDFFYLSTFFLSVLSVDVRRMELG 359
                     9899.7889***********************************9654 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   4.5   7.8e-13     7e-09     235     388 ..     206     357 ..     188     541 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 7.8e-13
     Patched 235 ivsvvlssdalkidwvrskpilailgvlspvlAivsslGlllwlGfrfnsiv.tvtPFLvLaiGvDdmflmvaawkrteaklsvkkrigealseagvai 332
                 i+++++     k   v+s++ l i+ v     +i+ss+ +  ++ +    i     P +vL++   +   +++a+  t  ++s+ +rig a+ ++g   
  CCE29996.1 206 IYFMMSL---SKLRAVKSRFGLIITIVAQIAFSIMSSFTICAIFNLDLSRIPrAAYPLVVLSMSLENTLRLINAVILTPFEDSTGNRIGSAFGQTGLTA 301
                 3333333...35666888888888888888899*******99****9999962578******************************************* PP

     Patched 333 tiTslTdvlsFgiGait.tlpaiqlFciytavailfdfiYqitffaavlaiaakaea 388
                 +  s+ +vl   iG      p+++ Fc+++avai+fdf+Y  tff +vl++  ++  
  CCE29996.1 302 LASSFQNVLI-LIGLSRlVSPGVSAFCVFAAVAIIFDFFYLSTFFLSVLSVDVRRME 357
                 ********96.7998761469****************************98554333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1026 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.49
# Mc/sec: 6358.86
//
Query:       CCE29997.1  [L=317]
Description: uncharacterized protein CPUR_03844 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-08   33.2   0.2    8.7e-08   31.9   0.2    1.6  1  14-3-3    14-3-3 protein


Domain annotation for each model (and alignments):
>> 14-3-3  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.2   4.8e-12   8.7e-08     138     216 ..     197     275 ..     190     279 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 4.8e-12
                 HHHHHHHHHHHHHTTTGCC-HHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHCCHCCCCCS.TTTHHHHHHHHHHHHH CS
      14-3-3 138 akeaYeeAleiakkelqpthpirLglaLNySVflyeilnspekAcelakkafdeaiaeldelseesykdstlilqlLrd 216
                 a++ ++eA ++a++ l  +h +rL++ ++yS flye +++ + + +lak+++ e  ++ + ++++  +d+  ++++L +
  CCE29997.1 197 AHQHFQEAAKLADDLLWGSHSLRLSVKIEYSAFLYECVRDADASRKLAKDTIAEVYDATEGMDDDMFNDACELVTILAK 275
                 7899******************************************************************999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2439.99
//
Query:       CCE29998.1  [L=210]
Description: uncharacterized protein CPUR_03845 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-73  244.5   0.0    7.8e-73  244.3   0.0    1.0  1  DUF4202   Domain of unknown function (DUF4202)


Domain annotation for each model (and alignments):
>> DUF4202  Domain of unknown function (DUF4202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   0.0   4.4e-77   7.8e-73       2     186 .]      15     204 ..      14     204 .. 0.94

  Alignments for each domain:
  == domain 1  score: 244.3 bits;  conditional E-value: 4.4e-77
     DUF4202   2 kalaaideahaeDPnkeeaeek.eskpkellyaqkmtewlaklepeasealrlAaraqhlrRwevpRssYpegragYlkWRtelkkrqAelaaelleea 99 
                 +al +id+ahaeDP+k++  ++  ++p+el+ya kmt+wla+++p+as+al++A+raqh+rRwe+pRs++p++r+gYl+WR+++k+++A+++++ll+++
  CCE29998.1  15 QALLLIDQAHAEDPTKVDGPGGsGTEPYELHYALKMTKWLARRCPNASPALQVACRAQHFRRWEMPRSTFPMTRPGYLSWRARQKSQAASQVSSLLASQ 113
                 8999**********999986552568**********************************************************************655 PP

     DUF4202 100 gy....deeeiervaalvrkeelkrdeetqlLEDvacLvFLedqfeeFakkheedeeklvdilrkTwaKmseegrelalklelseelkelv 186
                 +     ++ e er+aal+rke+l++d+etq+LEDvacLvFL+dq+++F++k++ +eek+v il kTwaKm+e+gr+lal+++ls++++ lv
  CCE29998.1 114 PSllslPDGERERIAALIRKEGLATDDETQVLEDVACLVFLDDQLDTFEAKEHVSEEKMVIILGKTWAKMTEQGRKLALEMDLSDRARMLV 204
                 4335559********************************************999*********************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1583.60
//
Query:       CCE29999.1  [L=179]
Description: uncharacterized protein CPUR_03846 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1306.63
//
Query:       CCE30000.1  [L=1285]
Description: related to regulatory protein SET1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-54  183.0   2.4    4.8e-54  183.0   2.4    4.7  5  N-SET      COMPASS (Complex proteins associated with Set1p) c
    4.3e-26   90.3   1.3    7.4e-26   89.6   0.1    2.2  3  SET_assoc  Histone lysine methyltransferase SET associated
    1.4e-18   67.9   0.1    1.4e-18   67.9   0.1    4.8  4  SET        SET domain
  ------ inclusion threshold ------
       0.19   11.9   0.6        2.7    8.1   0.0    3.1  3  ExbD       Biopolymer transport protein ExbD/TolR


Domain annotation for each model (and alignments):
>> N-SET  COMPASS (Complex proteins associated with Set1p) component N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.04   1.8e+02      73     126 ..     341     394 ..     326     409 .. 0.74
   2 ?   -7.6  11.8         4   1.8e+04      96     146 ..     562     611 ..     558     626 .. 0.66
   3 ?   -3.3   0.5       1.9   8.4e+03     103     122 ..     676     695 ..     666     712 .. 0.41
   4 ?   -4.4   5.9         4   1.8e+04      91     127 ..     888     932 ..     876     955 .. 0.55
   5 !  183.0   2.4   1.1e-57   4.8e-54       2     173 .]     971    1137 ..     970    1137 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.04
       N-SET  73 enatGcarteGykkIpdkeKskYLphrrkvqkaletveaeakkdekaaaaaaae 126
                 + a  + rt G+k  +d  K++Y p  rk +  le+  +++ +++ ++++a+++
  CCE30000.1 341 DAARRAVRTRGIKIDSDVVKVEYDPEGRKSRLMLEEHLNQDRQKQLKEKEAREQ 394
                 566678999**999999********99999999988776666555444444433 PP

  == domain 2  score: -7.6 bits;  conditional E-value: 4
       N-SET  96 LphrrkvqkaletveaeakkdekaaaaaaaeeaaekesskqeissSRenRa 146
                 L h+r++  ++et   ++ ++e++++ ++a+ ++++++++ + + S+ +R 
  CCE30000.1 562 LHHKRNAPLQRETSRIQEGDKERDRNRETAS-HNQSNAERRHLEESKRRRR 611
                 6788888888888888888887777666664.4444444444555555443 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.9
       N-SET 103 qkaletveaeakkdekaaaa 122
                 +  + + +++++++ k+ ++
  CCE30000.1 676 NLDQADEDEDEETSRKKLET 695
                 22222222222222222222 PP

  == domain 4  score: -4.4 bits;  conditional E-value: 4
       N-SET  91 eKskYLphrrkvqkaletveaeakkdekaaaaaaae........e 127
                 +K k L+ ++k++k+l + ++  k+++kaaa +++         e
  CCE30000.1 888 TKKKPLKPKKKTKKQLLEENEALKRQQKAAADEESYaedaalptE 932
                 566666555666655554444444444444333332343443321 PP

  == domain 5  score: 183.0 bits;  conditional E-value: 1.1e-57
       N-SET    2 illdldglqelikDeeDlkflkkllkeldekeassdignlelwawkqkeikelnglegikekeekiegyylenatGcarteGykkIpdkeKskYLph 98  
                  +++d+++lq+l +  +D + l kl +++d      dign elw+wk+++ +eln++++i + + +iegyy++n+tGcarteG+kk++++eKskYLph
  CCE30000.1  971 FKPDIRSLQNLALGIQDRPDLSKLQRKFD----IGDIGNPELWLWKRNRVRELNAASEILDRPVQIEGYYVPNSTGCARTEGVKKMLNSEKSKYLPH 1063
                  578**************************....**************************************************************** PP

       N-SET   99 rrkvqkaletveaeakkdekaaaaaaaeeaaekesskqeissSRenRannRRfvadieaqkaalgtesdlLslNq 173 
                  ++kvqka++++ea++kk++k++++aa+e aa+ +++k ++++SR+nRa+nRR+vad+++qk++lg++sd++++Nq
  CCE30000.1 1064 HIKVQKARQEREAHSKKNGKDNTSAASE-AAKLAAEKIAKGNSRANRATNRRYVADLNDQKKTLGQDSDVFKFNQ 1137
                  ********************99888875.677777777789*********************************9 PP

>> SET_assoc  Histone lysine methyltransferase SET associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.1   1.7e-29   7.4e-26       1      66 []     481     550 ..     481     550 .. 0.99
   2 ?   -3.6   0.0       2.1   9.2e+03      10      26 ..     744     760 ..     740     767 .. 0.78
   3 ?   -3.2   0.0       1.5   6.9e+03       1      14 [.    1219    1232 ..    1219    1236 .. 0.85

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 1.7e-29
   SET_assoc   1 FiskksvpvhkvtvedlkkrLkkyeweriledktGyYivFndsk....eAerCfraedgtklftyrmvme 66 
                 Fi+++ vpv ++ v++++krLk+y++e+i+ d+tG+Yi+F++s     eAerC+ra+++t++f+y+m+m+
  CCE30000.1 481 FIASEDVPVLPSIVPHMRKRLKNYGLEEIRLDRTGFYIIFRNSYsgraEAERCYRAVNHTEFFNYDMTMQ 550
                 9*******************************************************************96 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.1
   SET_assoc  10 hkvtvedlkkrLkkyew 26 
                 +++  + l +rLk+++ 
  CCE30000.1 744 SRSAFRSLHYRLKSFDS 760
                 5666788999***9986 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.5
   SET_assoc    1 Fiskksvpvhkvtv 14  
                  Fi+++++p+++  +
  CCE30000.1 1219 FINHSCMPNCTAKI 1232
                  9*******998765 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.52   2.3e+03      64     103 ..     367     406 ..     346     490 .. 0.58
   2 ?   -0.2   1.5      0.25   1.1e+03      52      95 ..     578     634 ..     546     745 .. 0.63
   3 ?   -6.8   7.6         4   1.8e+04      53      53 ..    1051    1051 ..     881    1149 .. 0.55
   4 !   67.9   0.1     3e-22   1.4e-18       2     168 ..    1155    1259 ..    1154    1260 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSXXXHCCCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  64 lqklakdqkqaekedtdaalkasskaesdlnaskpeagaf 103
                 ++k+    ++ +++d++++lk++   e+ ln++ p++ +f
  CCE30000.1 367 GRKSRLMLEEHLNQDRQKQLKEKEAREQALNKAPPTGPKF 406
                 5555555666677777777777777777776422222222 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.25
                 X...HHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS..........X CS
                 x...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........x RF
         SET  52 t...kelakasastllqklakdqkqaekedtdaalkasskaesdln..........a 95 
                 +   ke+     + + ++++++ +++e+++++++ +++  +e++++          a
  CCE30000.1 578 QegdKERDRNRETASHNQSNAERRHLEESKRRRREEEADLEEEKKQraknfdpvfeA 634
                 345556666666666666666666666666666666666666666533333333330 PP

  == domain 3  score: -6.8 bits;  conditional E-value: 4
                  H CS
                  x RF
         SET   53 k 53  
                  k
  CCE30000.1 1051 K 1051
                  0 PP

  == domain 4  score: 67.9 bits;  conditional E-value: 3e-22
                  CEEEESSXBXTTXEEEEEE.ECCEECHHHHHHHHHH........HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET    2 rGvfAtedIpkgeficeyp.eeiiltkdeadksele........aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasska 89  
                  +G++A e+I k+++i+ey+ e   ++++ a+ +e+          ylf ++                                              
  CCE30000.1 1155 WGLYAMENINKDDMIIEYVgE--EVRQQIAETREKRylksgigsSYLFRID---------------------------------------------- 1203
                  *******************73..3444444444433466899999999988.............................................. PP

                  XTTTSXXXHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   90 esdlnaskpeagafsaiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168 
                                      ++d  a+k+g+ a    rf+NHsC pNc++ +  v++++r++++A+rdI+ +eElt+dY
  CCE30000.1 1204 -----------------DDTVVD--ATKKGGIA----RFINHSCMPNCTAKIIKVEGSKRIVIYALRDIALNEELTYDY 1259
                  .................567799..77******....****************************************** PP

>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00061       2.7      25      74 ..     442     489 ..     440     523 .. 0.80
   2 ?   -1.1   0.0      0.44     2e+03      36      68 ..     826     871 ..     818     999 .. 0.59
   3 ?   -1.3   0.0       0.5   2.2e+03      67      99 ..    1156    1202 ..    1105    1219 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00061
        ExbD  25 lvtaklkkpeplevdlPsssstqkeveekelirisisadgsiyldkkav.s 74 
                 + t++  +p+ + ++ Pss+ ++  + e++++ +++s+d  i++ +++v  
  CCE30000.1 442 MATTSTGTPM-QSITTPSSRLQA--AVEPQSVVVQLSNDPYIFIASEDVpV 489
                 5677777777.79**********..9*****************99999642 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.44
        ExbD  36 levdlPsssstqkeveekelirisisadgsiy.............l 68 
                 ++++l s++++++++e++ +i+i+  +d++++              
  CCE30000.1 826 IPLELGSKRQKKSNKEPPLKIKIVDLEDDRLHtsdtpelglvgedE 871
                 5556655555554444444444444466666533333333333330 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.5
        ExbD   67 y......ldkkavsveelaqklkerkakppdk........ltvaika 99  
                         ++k+++ +e++ ++++++ a++++k            ++ 
  CCE30000.1 1156 GlyamenINKDDMIIEYVGEEVRQQIAETREKrylksgigSSYLFRI 1202
                  04455558999999999999999999999888666665554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1813  (0.101121); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.47
# Mc/sec: 8242.31
//
Query:       CCE30001.1  [L=440]
Description: uncharacterized protein CPUR_03848 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3385.00
//
Query:       CCE30002.1  [L=161]
Description: probable TPM2-tropomyosin, isoform 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-52  176.8  37.7    3.2e-52  176.5  37.7    1.2  1  Tropomyosin_1    Tropomyosin like
    1.9e-07   30.7  33.6     0.0038   16.6  17.9    2.9  2  Tropomyosin      Tropomyosin
    0.00045   20.2  33.4     0.0036   17.4   8.6    4.1  4  Cep57_CLD_2      Centrosome localisation domain of PPC89
     0.0017   18.7  38.1       0.15   12.4  19.1    2.0  2  Uso1_p115_C      Uso1 / p115 like vesicle tethering protein, 
     0.0018   18.5  36.9       0.43   10.8  17.8    2.2  2  ATG16            Autophagy protein 16 (ATG16)
     0.0035   17.4   9.4     0.0035   17.4   9.4    3.0  2  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
     0.0037   16.2  36.5      0.085   11.7  18.9    2.0  2  Spc7             Spc7 kinetochore protein
      0.006   15.9  30.8       0.12   11.6  11.8    2.1  2  DUF3450          Protein of unknown function (DUF3450)
     0.0077   16.1  40.8      0.025   14.4  21.2    2.1  2  ERM              Ezrin/radixin/moesin family
     0.0093   15.8  26.4      0.083   12.7  10.6    2.1  2  DUF724           Protein of unknown function (DUF724)
  ------ inclusion threshold ------
      0.012   15.0  35.4       0.18   11.1  20.7    2.3  2  GAS              Growth-arrest specific micro-tubule binding
      0.012   15.7  35.3       0.02   15.0   9.0    3.0  3  ADIP             Afadin- and alpha -actinin-Binding
      0.013   15.9  36.0      0.045   14.2  17.1    2.4  2  DUF4200          Domain of unknown function (DUF4200)
      0.013   14.7  32.0       0.34   10.0   9.2    2.1  2  Taxilin          Myosin-like coiled-coil protein
      0.014   13.8  30.1     0.0077   14.7  12.4    2.0  2  MAD              Mitotic checkpoint protein
      0.015   15.6  27.0       0.02   15.1   8.2    3.2  3  KLRAQ            Predicted coiled-coil domain-containing prot
      0.017   15.5  24.3       0.18   12.2   3.8    4.5  4  FlaC_arch        Flagella accessory protein C (FlaC)
      0.017   15.1   6.7      0.017   15.1   6.7    2.2  2  Laminin_II       Laminin Domain II
      0.019   15.0  34.2        0.3   11.2  17.0    2.2  2  BRE1             BRE1 E3 ubiquitin ligase
      0.019   13.6  27.8      0.033   12.8   9.1    2.0  2  AAA_13           AAA domain
      0.035   13.7  38.0       0.51   10.0  18.6    2.3  2  Lebercilin       Ciliary protein causing Leber congenital ama
      0.042   14.1  28.3       0.42   10.9  12.1    3.2  3  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
      0.044   13.8  40.5        0.3   11.1  11.9    3.0  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
      0.047   13.6  28.8      0.057   13.3  28.8    1.0  1  CEP63            Centrosomal protein of 63 kDa
      0.053   13.0  33.0       0.08   12.4  33.0    1.2  1  HMMR_N           Hyaluronan mediated motility receptor N-term
        0.1   13.1  20.9        2.1    8.8   6.2    2.5  2  T3SSipB          Type III cell invasion protein SipB
       0.11   13.0  43.6        1.7    9.2  27.1    2.2  2  APG6_N           Apg6 coiled-coil region
       0.14   12.4  29.8          1    9.6  16.2    2.4  2  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
       0.15   12.5  44.0       0.48   10.9   4.5    4.2  1  ZapB             Cell division protein ZapB
       0.15   12.5  30.7       0.14   12.6  28.8    1.6  1  Fez1             Fez1
       0.16   11.9   4.8       0.29   11.1   0.0    3.3  3  Surfac_D-trimer  Lung surfactant protein D coiled-coil trimer
       0.16   12.1  37.3       0.24   11.6  25.0    2.2  2  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
       0.17   11.2  28.9       0.19   11.1  12.8    2.2  2  Rab5-bind        Rabaptin-like protein
       0.18   12.9  27.8       0.24   12.5   4.3    3.3  3  SOGA             Protein SOGA
       0.18   12.5  21.1       0.96   10.2   6.7    2.3  2  DUF2203          Uncharacterized conserved protein (DUF2203)
       0.21   12.0  14.3        1.9    9.0   0.7    3.2  2  NPV_P10          Nucleopolyhedrovirus P10 protein
       0.25   11.1  30.1        3.4    7.5  11.4    3.1  3  Phage_GP20       Phage minor structural protein GP20
       0.27   11.6  24.2       0.69   10.3   2.3    3.4  3  BLOC1_2          Biogenesis of lysosome-related organelles co
       0.27   11.4  30.0       0.79   10.0   2.3    4.1  4  XhlA             Haemolysin XhlA
       0.35   10.7  36.1        1.2    8.9  29.2    2.1  2  KASH_CCD         Coiled-coil region of CCDC155 or KASH
       0.35    9.7  34.8       0.94    8.3  10.8    2.0  2  CALCOCO1         Calcium binding and coiled-coil domain (CALC
       0.38   11.2  34.5       0.24   11.9   3.5    3.7  4  KELK             KELK-motif containing domain of MRCK Ser/Thr
        0.4   10.9   2.2       0.48   10.6   1.0    1.8  1  HHV-5_US34A      Herpesvirus US34A protein family
       0.44   10.7  35.0       0.39   10.8   2.5    5.1  5  bZIP_1           bZIP transcription factor
       0.52   10.0  10.4          2    8.2   0.4    3.2  3  DUF3287          Protein of unknown function (DUF3287)
       0.56   10.2  38.4        0.8    9.8  14.0    3.5  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
       0.61    9.2  38.3       0.77    8.8  24.7    2.0  2  DUF4686          Domain of unknown function (DUF4686)
       0.67   10.4  28.9        2.4    8.6  11.2    2.9  2  CENP-H           Centromere protein H (CENP-H)
       0.87    9.6  17.2        6.9    6.7   4.1    3.0  2  DUF1664          Protein of unknown function (DUF1664)
       0.99    9.7  16.2       0.67   10.2   0.7    3.8  1  WXG100           Proteins of 100 residues with WXG
       0.99    9.7  25.4        6.7    7.0   6.7    3.2  3  Cortex-I_coil    Cortexillin I, coiled coil
          1    9.8  29.4         20    5.7   6.8    3.5  4  CLZ              C-terminal leucine zipper domain of cyclic n
        1.2    8.6  34.4        2.6    7.6  17.3    2.3  2  HAUS-augmin3     HAUS augmin-like complex subunit 3
        1.2    8.4  23.9       0.14   11.5   1.5    2.1  2  CASP_C           CASP C terminal
        1.6    8.7  33.1       0.29   11.1   5.8    4.0  4  Prefoldin        Prefoldin subunit
        1.6    8.1  27.1         95    2.3  27.1    3.1  1  DUF4618          Domain of unknown function (DUF4618)
        2.2    7.9  29.4          8    6.1  13.0    2.6  2  SHE3             SWI5-dependent HO expression protein 3
        2.3    8.7  30.5        1.4    9.4   6.8    4.1  4  Fungal_TACC      Fungal Transforming acidic coiled-coil (TACC
        2.3    5.6  30.7        3.4    5.0  30.7    1.2  1  DUF3584          Protein of unknown function (DUF3584)
        3.1    8.2  14.3         14    6.1   4.1    3.5  4  Alanine_zipper   Alanine-zipper, major outer membrane lipopro
        3.1    7.9  43.8       0.61   10.2   2.4    5.7  6  bZIP_2           Basic region leucine zipper
        3.2    7.9  21.2        4.4    7.5   8.1    2.3  2  Fib_alpha        Fibrinogen alpha/beta chain family
        3.3    7.8  37.1        2.1    8.4  14.3    2.1  2  UPF0242          Uncharacterised protein family (UPF0242) N-t
        3.3    6.5  28.5       0.18   10.7  13.1    2.0  2  Fmp27_WPPW       RNA pol II promoter Fmp27 protein domain
        3.4    7.5  35.8        1.3    8.9   5.8    4.3  4  DivIC            Septum formation initiator
        3.9    5.5  33.2        8.3    4.4  33.2    1.6  1  HOOK             HOOK protein
        4.4    7.3  34.3       0.63   10.0   8.9    2.1  2  Rootletin        Ciliary rootlet component, centrosome cohesi
        4.6    6.8  29.2         26    4.4  28.4    2.0  1  PI3K_P85_iSH2    Phosphatidylinositol 3-kinase regulatory sub
        4.9    7.7  31.4        4.9    7.7  11.9    3.4  2  Spectrin         Spectrin repeat
        5.4    7.2  25.9        2.3    8.3   5.3    3.9  4  DUF5595          Domain of unknown function (DUF5595)
          6    7.9  17.4        2.3    9.2   6.3    2.3  2  CSN5_C           Cop9 signalosome subunit 5 C-terminal domain
        6.1    6.9  31.1        2.5    8.2   6.8    2.2  2  Mod_r            Modifier of rudimentary (Mod(r)) protein
        6.5    6.0  25.9         23    4.2  25.9    1.7  1  DUF4407          Domain of unknown function (DUF4407)
        6.6    7.0  26.2         12    6.2   0.7    3.0  2  DUF5082          Domain of unknown function (DUF5082)
        6.8    6.4  25.2        1.4    8.6   8.4    2.0  2  DUF745           Protein of unknown function (DUF745)
        7.1    6.6  24.8        1.3    9.0   1.3    4.6  5  GIT_CC           GIT coiled-coil Rho guanine nucleotide excha
        7.6    6.3  18.9        2.5    7.8   6.9    2.7  3  Lectin_N         Hepatic lectin, N-terminal domain
        7.6    6.1  24.0        9.2    5.8  14.3    2.0  2  Phage_GPO        Phage capsid scaffolding protein (GPO) serin
        7.7    6.5  38.1        3.7    7.6   5.8    4.2  4  Prefoldin_2      Prefoldin subunit
        8.3    6.3  32.2       0.53   10.2   6.3    2.6  2  JAKMIP_CC3       JAKMIP CC3 domain
        8.5    5.5  19.7         31    3.7  19.1    1.8  1  MPS2             Monopolar spindle protein 2


Domain annotation for each model (and alignments):
>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.5  37.7   1.5e-54   3.2e-52       1     142 [.       7     148 ..       7     158 .. 0.99

  Alignments for each domain:
  == domain 1  score: 176.5 bits;  conditional E-value: 1.5e-54
  Tropomyosin_1   1 klnsLkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkL 96 
                    k+nsL+lea+ea +k+eel+ kvK+leqenl+keqei+sL++kn++le evekle+++k++k+ a+e++++ t+ne+l+r++qlLEee+e++dk+L
     CCE30002.1   7 KMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQHGTQNETLQRRLQLLEEEAEDADKTL 102
                    9*********************************************************************************************** PP

  Tropomyosin_1  97 kettekLretdvkaeelERkvkaLeqerdewekkyeeleekykeak 142
                    +e++ekLr+tdvka+++ERkv+aLeqerd+we+kyee+++k+ + +
     CCE30002.1 103 REANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQ 148
                    *****************************************99876 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5  11.2   7.9e-05     0.017       1      72 [.       6      77 ..       6      83 .. 0.89
   2 !   16.6  17.9   1.7e-05    0.0038      35     101 ..      78     144 ..      65     157 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.9e-05
  Tropomyosin  1 kklkqveeeldeaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaeka 72
                 +k+++++ e+dea  + e++++k+++ e++  + e+E ++l+ + +lle e+e+ e+ +++ ++  +e +++
   CCE30002.1  6 EKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQH 77
                 59******************************************************9999876666666655 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.7e-05
  Tropomyosin  35 eaEvaalnrriqlleeelerteerleealekLeeaekaadeserarKvlEnrelkdeekleeleaql 101
                   +  ++l+rr+qlleee e +++ l ea ekL +   +a   er + +lE+   + e+k ee+ ++ 
   CCE30002.1  78 GTQNETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKH 144
                  456689********************************************99988888877665554 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.0     0.033       7.3      27      60 ..       9      42 ..       4      43 .. 0.54
   2 !    9.2   0.9    0.0058       1.3       2      27 ..      40      65 ..      39      73 .. 0.93
   3 ?    3.4   4.6      0.36        81       4      30 ..      80     110 ..      78     113 .. 0.82
   4 !   17.4   8.6   1.6e-05    0.0036       6      60 ..     100     157 ..      96     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.033
  Cep57_CLD_2 27 krLnkERdsalrqLgvAyeelneLkaevealrkE 60
                 ++L+ E d+a+ +  +    + +L +e+ ++++E
   CCE30002.1  9 NSLRLEADEAAAKVEELQTKVKSLEQENLSKEQE 42
                 5555555555555555555555555555555544 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0058
  Cep57_CLD_2  2 eaevktLqnrLdsltrklqvheeelk 27
                 e+e+++Lq +++ l+ ++++ e+++k
   CCE30002.1 40 EQEITSLQHKNNLLEGEVEKLETAIK 65
                 89********************9988 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.36
  Cep57_CLD_2   4 evktLqnrLdsltrklqvhe....eelkrLn 30 
                  +++tLq rL  l+++++ ++    e++++L+
   CCE30002.1  80 QNETLQRRLQLLEEEAEDADktlrEANEKLR 110
                  8999*********999999977776777766 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 1.6e-05
  Cep57_CLD_2   6 ktL...qnrLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaevealrkE 60 
                  ktL    ++L +++ k++++e   ++L +ERd  +++  +  + +  L+ e+e l++E
   CCE30002.1 100 KTLreaNEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNE 157
                  677222345566667*****************************************99 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2  13.4    0.0016      0.35       6      78 ..       4      74 ..       1      79 [. 0.84
   2 !   12.4  19.1    0.0007      0.15      11      85 ..      75     154 ..      68     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0016
  Uso1_p115_C  6 leseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekekekek 78
                 ++++ +sl+ e+ ++ a++++l+++++sleq+  + + e++ ++l+ +n+ le e+ekl+ ++k+ k+ ++e 
   CCE30002.1  4 IKEKMNSLRLEADEAAAKVEELQTKVKSLEQE--NLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEG 74
                 7889999*************************..777777788888888888888888888888888877654 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.0007
  Uso1_p115_C  11 aslkdeneklkaelqslskalesleqk.....eakkaaesqakeleaenkklekeleklraelkeekekekekqkEldDL 85 
                  ++  ++ne+l+ +lq l++++e++ ++     e++ + + +a ++e ++++le+e ++ +++++e ++k    qkEl++L
   CCE30002.1  75 QQHGTQNETLQRRLQLLEEEAEDADKTlreanEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEEL 154
                  55556667777777777777777766666665668899999*****************************977*****98 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8  17.8     0.002      0.43      81     151 ..       6      76 ..       2      95 .. 0.59
   2 ?    7.8  19.6     0.016       3.6      89     166 ..      80     157 ..      68     161 .] 0.52

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.002
       ATG16  81 qklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekek 151
                 +k+ +lr e  e+  + +el++++++l++e   +e+++++ + + + le e+++let++kd+++   e ++
  CCE30002.1   6 EKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQ 76 
                 55666777777777777777777777777777777777777777777777777777777777665544332 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.016
       ATG16  89 elaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlq 166
                 + ++l+++ + l++   ++ ++l++ +ekl++ + +  + e++++ale+++++ e++ +e ++ + +lq El+ Lq +
  CCE30002.1  80 QNETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNE 157
                 334444444444444444444444444444444444445555555555555555555555555555666666666654 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  10.4         1   2.3e+02       9      69 ..      40     103 ..      36     105 .. 0.74
   2 !   17.4   9.4   1.6e-05    0.0035       3      63 ..     100     160 ..      97     161 .] 0.93

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 1
  CENP-F_leu_zip   9 lekLKeserkadsLkdkvenLerelem...seenqekvileaEtskaevetlkeeieelaeelr 69 
                     +++    ++k+++L++ ve+Le  +++   +  + ++  ++ Et +  ++ l+ee e   ++lr
      CCE30002.1  40 EQEITSLQHKNNLLEGEVEKLETAIKDhkkVADEGQQHGTQNETLQRRLQLLEEEAEDADKTLR 103
                     5666778999999999999999755540005556778889999999999999999888777776 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.6e-05
  CENP-F_leu_zip   3 kkklhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeiee 63 
                     k  +++ ekL+++  ka + + kv++Le+e  + e++ e++     t ++e+e+l++ei +
      CCE30002.1 100 KTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEIGN 160
                     5567889***************************************************976 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5  12.1    0.0018       0.4     198     263 ..       5      70 ..       1      77 [. 0.71
   2 !   11.7  18.9   0.00038     0.085     163     255 ..      68     156 ..      64     159 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0018
        Spc7 198 keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgw 263
                 ke++++lr e +e+ a++ee+++++++l+++  ++e++i++l+ + + le e+++ e  ++ +k++
  CCE30002.1   5 KEKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKV 70 
                 567777777777777777777777777777777777777777777777777777777777766655 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00038
        Spc7 163 eeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaer 255
                 +++ +  ++  ++ ++l+++l+ l+e+ae+      + L+e+ e+l++ +++  + +++++ l++++++ e+k ee++++ ++l++e++e ++
  CCE30002.1  68 KKVADEGQQHGTQNETLQRRLQLLEEEAED----ADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQN 156
                 5555556667788899**********7765....5678***************************************************9875 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6  11.8   0.00056      0.12      16      99 ..       6      89 ..       1      91 [. 0.93
   2 !   11.1  17.3   0.00081      0.18      17     107 ..      66     156 ..      61     161 .] 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00056
     DUF3450 16 atldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelv 99
                +++++++ ea +a a+ ++ q+k+++l++e  + ++e+++l+ +++ le + e+le  +++ ++  ++ ++  ++ e ++r+l+
  CCE30002.1  6 EKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQHGTQNETLQRRLQ 89
                67788888999999************************************************************9999999987 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00081
     DUF3450  17 tldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekmid 107
                 + +++ +e+++  ++ +  q++ + l++e+++  + +r+++e+l +++v+  ++er v+++eqe+++ e++ ee+ +  + l+  le++ +
  CCE30002.1  66 DHKKVADEGQQHGTQNETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQN 156
                 567899999*******************************************************************999999988887765 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  11.9     0.012       2.6       9      74 ..       3      68 ..       1      79 [. 0.82
   2 !   14.4  21.2   0.00011     0.025       6      85 ..      80     159 ..      75     161 .] 0.95

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.012
         ERM  9 eleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekee 74
                +++e++ +l+ ea++a ++ +e + +++ L++++   e+e   L++k++ +e e ++l+ + ++ +
  CCE30002.1  3 RIKEKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHK 68
                578899999999999999999999999999999999999999999999999999999887655544 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 0.00011
         ERM   6 ekreleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklr 85 
                 +++ l++rL+ l+eeae a + Lre++e+ ++ + ka   e++ + Leq++ + e++ +++++++   ++e e+l++++ 
  CCE30002.1  80 QNETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEIG 159
                 6789***********************************************************************99985 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   7.8    0.0038      0.84     123     182 ..       6      65 ..       1      72 [. 0.80
   2 !   12.7  10.6   0.00038     0.083     100     176 ..      84     160 ..      79     161 .] 0.91

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0038
      DUF724 123 sekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeFe 182
                 +++++l  e de   k+ el+++ ++l +++ ++++ei +l+++++ le e+e+ e+  +
  CCE30002.1   6 EKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIK 65 
                 345566678889999999999999999999999999999999999999999998887655 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00038
      DUF724 100 lkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeled 176
                 l+ + + l+ee ++++k ++e++++ r+ + +  + e+k++ le+++++  +k e+++++  +l++e e+l++e+ +
  CCE30002.1  84 LQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEIGN 160
                 6677778899999********************************************************99999865 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  20.7   0.00082      0.18      65     168 ..      10     105 ..       1     109 [. 0.68
   2 ?   10.6  18.8    0.0012      0.27      46     136 ..      71     158 ..      65     161 .] 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00082
         GAS  65 kaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLekklkalqeelEkkea 163
                  ++ e +e    +++ e+ + + k+l++++ + e+e+++l+++++ le ++ek+e ++++      +++ +  q+ g +n  L+++l+ l+ee E +++
  CCE30002.1  10 SLRLEADEA---AAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDH-----KKVADEGQQHGTQNETLQRRLQLLEEEAEDADK 100
                 333333333...3334444445666667777777777777777777777777777777654.....44667789999********************** PP

         GAS 164 qleev 168
                  l+e+
  CCE30002.1 101 TLREA 105
                 *9987 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0012
         GAS  46 ekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqev 136
                   e +++ ++n+ l+  L+ +eee e   k l++ ++   +l+++  +  + e+++++l++e ++ eq++e++ ++  +l+k+ e+  +e+
  CCE30002.1  71 ADEGQQHGTQNETLQRRLQLLEEEAEDADKTLREANE---KLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEI 158
                 5566788899999999999999999999999998877...888999999999999999999999999999999999999998888876665 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   9.0   9.2e-05      0.02      68     130 ..       7      69 ..       1      73 [. 0.87
   2 ?    6.2   5.9     0.045        10      78     114 ..      76     112 ..      69     116 .. 0.86
   3 ?    6.3   5.3     0.041       9.1      86     126 ..     119     159 ..     112     161 .] 0.63

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.2e-05
        ADIP  68 eierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqikt 130
                  + +l+ + +   +++e+l++++++++++  + e+++++l++k++ +  e+++l++a+++ k+
  CCE30002.1   7 KMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKK 69 
                 566777788888899*******************************************99886 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.045
        ADIP  78 rlktqleqlerelalvqakerqlekklktleqklkne 114
                 +  tq+e l+r+l+l++++  ++ k+l+++++kl+++
  CCE30002.1  76 QHGTQNETLQRRLQLLEEEAEDADKTLREANEKLRQT 112
                 4559999999999999999999999999999999875 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.041
        ADIP  86 lerelalvqakerqlekklktleqklknekeelqrlknalq 126
                 +er++++++++  q e+k+++  qk+ +++ el+ l+n + 
  CCE30002.1 119 YERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEIG 159
                 56666666666666666666666666666666666666665 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  10.7     0.018       3.9      43     108 ..       4      69 ..       1      72 [. 0.90
   2 ?   14.2  17.1    0.0002     0.045      32     107 ..      80     155 ..      70     161 .] 0.67

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.018
     DUF4200  43 leedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleeykk 108
                 ++e+++ +     e  ak ++ + k+++ ++++ +ke+ei  l+++ + l+ e ekle +++++kk
  CCE30002.1   4 IKEKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKK 69 
                 677777777777899999********************************************9997 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 0.0002
     DUF4200  32 reeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleeyk 107
                 + e l+++ q lee+++  dk l+e ++k ++   ka   +++ +  e+e  + +++ e++ ++++ l+++lee++
  CCE30002.1  80 QNETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQ 155
                 4566666667777777777777777777777777777777777777777777777777777777777777777665 PP

>> Taxilin  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   9.2    0.0015      0.34     246     306 ..       1      61 [.       1      63 [. 0.82
   2 ?    9.5  16.7    0.0023       0.5     195     288 ..      65     158 ..      58     161 .] 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0015
     Taxilin 246 mekmtkktkklEketnlwkskfektnkallemaeertekkkeieklkkkiqkLeklcraLq 306
                 m+++++k+ +l  e ++   k e+ + ++ ++ +e+  k++ei++l+ k++ Le  +++L+
  CCE30002.1   1 MDRIKEKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLE 61 
                 8888888888888888888888888888888888888888888888888888888777765 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0023
     Taxilin 195 keakeltkkvkalketekelkeqlnlYaeKfeefqdtLakSnelFatFkkEmekmtkktkklEketnlwkskfektnkallemaeertekkkei 288
                 k+ k+  ++ ++   +++ l+ +l+l +e  e+  +tL   ne   +          k++ lE+e ++w +k+e++ ++ + + +e +e ++ei
  CCE30002.1  65 KDHKKVADEGQQHGTQNETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEI 158
                 55667777778889999*********************************************************99999888888888888876 PP

>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7  12.4   3.5e-05    0.0077     280     355 ..      17      95 ..       5      99 .. 0.86
   2 ?    5.3   9.9     0.024       5.4     111     168 ..     100     157 ..      95     161 .] 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.5e-05
         MAD 280 alsrkieqLqqeeivlkeeksslesslkqlekaqreleqelaqllkkiedlkkkr...kehkelkrRLQrrvllltkEr 355
                 ++++k+e+Lq + ++l++e+ s e+++ +l+++++ le e+++l+  i+d kk     ++h  +++ LQrr+ ll  E 
  CCE30002.1  17 EAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVAdegQQHGTQNETLQRRLQLLEEEA 95 
                 457899********************************************9986521257889***********99885 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.024
         MAD 111 nelaelkrqiekqelelsekeseleelqerldllkkklseleqliqqlekkqkelaea 168
                 + l+e ++++++++++  + e ++++l+++ d  ++k++e+ q+  +l+k+ +el+++
  CCE30002.1 100 KTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNE 157
                 5678888888888888888889999999999999999999999998888888888765 PP

>> KLRAQ  Predicted coiled-coil domain-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   8.2   8.9e-05      0.02      24      76 ..      18      70 ..       2      80 .. 0.84
   2 ?    7.4   2.3     0.024       5.3      46      83 ..      71     108 ..      68     118 .. 0.68
   3 ?    2.9   5.6      0.58   1.3e+02      37      73 ..     118     154 ..     104     160 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.9e-05
       KLRAQ 24 EqskeaslkeelkekeqslrkseqEvdsLtFrNkqLekrvellqeeleveekk 76
                  +k+++l+ ++k+ eq+    eqE+ sL+ +N+ Le  ve l   ++ ++k 
  CCE30002.1 18 AAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKV 70
                46899*************999**************************987654 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.024
       KLRAQ  46 eqEvdsLtFrNkqLekrvellqeeleveekkvkskskn 83 
                   E +  + +N+ L++r++ll ee e + k ++  +++
  CCE30002.1  71 ADEGQQHGTQNETLQRRLQLLEEEAEDADKTLREANEK 108
                 55666667789999999999999999988885544442 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.58
       KLRAQ  37 ekeqslrkseqEvdsLtFrNkqLekrvellqeeleve 73 
                 ++e +++  eqE d  + + + ++++ ++lq+ele+ 
  CCE30002.1 118 HYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEEL 154
                 4677788888888888888888888888888888754 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.7    0.0039      0.87       3      33 ..       2      32 ..       1      36 [. 0.51
   2 ?   12.2   3.8   0.00083      0.18       1      39 [.      28      66 ..      28      72 .. 0.95
   3 ?    2.2   0.3       1.1   2.5e+02      16      38 ..      81     103 ..      68     112 .. 0.63
   4 ?    7.9   1.7     0.018         4       4      32 ..     132     160 ..     115     161 .] 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0039
   FlaC_arch  3 delEnklsklsteletvkkeneelsksveel 33
                d + +k+++l  e + + ++ eel+++v+ l
  CCE30002.1  2 DRIKEKMNSLRLEADEAAAKVEELQTKVKSL 32
                4455555555555555555555555555555 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00083
   FlaC_arch  1 ridelEnklsklsteletvkkeneelsksveelkenVkd 39
                ++++lE++  + + e+++++ +n+ l+ +ve+l+  +kd
  CCE30002.1 28 KVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKD 66
                89*********************************9986 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 1.1
   FlaC_arch  16 letvkkeneelsksveelkenVk 38 
                  et+++ ++ l+++ e+ +++ +
  CCE30002.1  81 NETLQRRLQLLEEEAEDADKTLR 103
                 55666666666666665555543 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.018
   FlaC_arch   4 elEnklsklsteletvkkeneelsksvee 32 
                 + E+k +++  + +t++ke+eel++++ +
  CCE30002.1 132 QWEQKYEEMAQKHTTLQKELEELQNEIGN 160
                 45777778888888888888888888865 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.7      0.13        29      28      81 ..      10      63 ..       1      76 [. 0.45
   2 ?   15.1   6.7   7.6e-05     0.017      18      98 ..      80     157 ..      69     161 .] 0.88

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.13
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHH CS
  Laminin_II 28 ntkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkql 81
                 ++ ++ e++++vee + kvk++ +   + ++++  L+++ + L+  +++l++ 
  CCE30002.1 10 SLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETA 63
                344444444444444444444444444444444444444444444444444333 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 7.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHH CS
  Laminin_II  18 qlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikel 98 
                 q + l+ +l+ ++e+++ ++++++e nek+++        +r+v+ Le++ +q ++k +e+ q++     l ++++e+++ 
  CCE30002.1  80 QNETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTT---LQKELEELQNE 157
                 6678999*********************************************************999...66666666544 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  17.0    0.0014       0.3       5      95 .]       1      94 [.       1      94 [. 0.92
   2 ?    7.9  12.3     0.015       3.3       5      67 ..      95     157 ..      84     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0014
        BRE1  5 LvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLke...lekefvrklkeleke 95
                ++++++ ++ l+ ++++  ++++ l+ k++ le+e    +q++ +++++ + le e+ kL + ++  +++ ++ ++     + ++r+l+ le+e
  CCE30002.1  1 MDRIKEKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQhgtQNETLQRRLQLLEEE 94
                578899999*******************************************************************996566677888888765 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.015
        BRE1   5 LvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkl 67 
                  ++  k  +e++e+l++   +  + e k++ le+e ++ +qky +   +  +l++el  L++ 
  CCE30002.1  95 AEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNE 157
                 4555666778888888888888999********************************999875 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   9.1   0.00015     0.033     397     462 ..       9      73 ..       2      77 .. 0.89
   2 ?    7.0  10.7    0.0087       1.9     387     455 ..      90     160 ..      78     161 .] 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00015
      AAA_13 397 kklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaee 462
                 ++l+l ++ e+ ++++e+++k+k+le++  + e+e++  + + + le+e++ Le+ ++d+k+ a+e
  CCE30002.1   9 NSLRL-EADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADE 73 
                 55666.678899**************************************************9997 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0087
      AAA_13 387 nleeekeeakkklelhlveeleseld..eykkkykklekaieklekelkeeeaelkkleeeikeLekqlrd 455
                  leee+e+a k l+    +  + +++  +y++k+++le++  + e++ +e +++  +l++e +eL++++ +
  CCE30002.1  90 LLEEEAEDADKTLREANEKLRQTDVKagHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEIGN 160
                 5778888888888876654445555555899*************************************987 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  18.6    0.0023      0.51      99     188 ..       3      90 ..       1      94 [. 0.89
   2 ?    7.3  21.7     0.015       3.4      96     185 ..      56     157 ..      54     160 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0023
  Lebercilin  99 rlkdklkklkkLsedknLaereeLqkkLeeleakleekeekikeLerkleleeksfrrqlaaekkktkeaqeevkalqeeierlkqklke 188
                 r+k+k++ l+ L  d   a  eeLq+k+++le++  +ke++i +L++k +l+e + + +l++  k +k++ +e ++  ++ e+l+++l+ 
  CCE30002.1   3 RIKEKMNSLR-LEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVE-KLETAIKDHKKVADEGQQHGTQNETLQRRLQL 90 
                 6677777775.88899999***********************************986.699999*********************99985 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.015
  Lebercilin  96 ellrlkdklkklkkLsed..knLaereeLqkkLeeleakleekeekikeLerklelee..........ksfrrqlaaekkktkeaqeevkalqeeierl 182
                 e+++l++++k+ kk++++  ++    e+Lq++L+ le+++e+++++++e + kl++++          ++ +++  ++++k  e+ ++ ++lq+e+e+l
  CCE30002.1  56 EVEKLETAIKDHKKVADEgqQHGTQNETLQRRLQLLEEEAEDADKTLREANEKLRQTDvkaghyerkvQALEQERDQWEQKYEEMAQKHTTLQKELEEL 154
                 667777888888887764225667778888888888888888888888888776654421111111112333344455566666666666666666666 PP

  Lebercilin 183 kqk 185
                 +++
  CCE30002.1 155 QNE 157
                 655 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   2.3      0.12        28      59      88 ..       4      34 ..       1      36 [. 0.58
   2 ?   10.9  12.1    0.0019      0.42      28     100 ..      26      98 ..      22     104 .. 0.93
   3 ?    9.4   3.5    0.0054       1.2      67     107 ..     121     161 .]     102     161 .] 0.76

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.12
                  CCCCCCTT.S-TCCCCCCCHHHHHHHHHHHH CS
  Seryl_tRNA_N 59 Igkakkkk.edaeeliaevkelkeelkalea 88
                  I++++++   +a+e  a+v+el++++k le+
    CCE30002.1  4 IKEKMNSLrLEADEAAAKVEELQTKVKSLEQ 34
                  5555555555666666666666666666665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0019
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  28 vdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100
                     ++ +l+++  + ++e+ +lq++ N l  e++k+  + +d +++ +e+++ +++ ++l+ +l+ le+e e++
    CCE30002.1  26 QTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQHGTQNETLQRRLQLLEEEAEDA 98 
                   57899***************************************************************99876 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0054
                   S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS--- CS
  Seryl_tRNA_N  67 edaeeliaevkelkeelkaleaelkeleaeleklllaiPNi 107
                    + ++l +e ++  ++ +++ ++ ++l++ele+l  +i+Ni
    CCE30002.1 121 RKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEIGNI 161
                   56788888888888888888888888888888888888887 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  11.9    0.0014       0.3      57     116 ..       6      68 ..       2      71 .. 0.86
   2 ?    4.3  23.0      0.17        39      46     128 ..      61     153 ..      58     154 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0014
  TPR_MLP1_2  57 kelqalreelnelkaeiaelkaeaesakaeleesee...sweeqkeelekelselekriedln 116
                 +++++lr e++e+ a+++el+++++s+++e+  +e+   s++ + + le e+++le+ i+d +
  CCE30002.1   6 EKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQeitSLQHKNNLLEGEVEKLETAIKDHK 68 
                 57899**********************99998888723356678889************9976 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.17
  TPR_MLP1_2  46 erelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesw..........eeqkeelekelselekriedlneqNklLhdQlEs 128
                 e+ +  h++ ++e q+  ++ ++l+ +++ l++eae+a ++l e+ e++          e++ ++le+e ++ e+++e++ ++ ++L + lE+
  CCE30002.1  61 ETAIKDHKKVADEGQQHGTQNETLQRRLQLLEEEAEDADKTLREANEKLrqtdvkaghyERKVQALEQERDQWEQKYEEMAQKHTTLQKELEE 153
                 566667777777777777888888888888888888888877777776522222222225566888999999999999999999999888887 PP

>> CEP63  Centrosomal protein of 63 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  28.8   0.00026     0.057     115     265 ..       7     158 ..       2     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00026
       CEP63 115 skeedrvelsrlnskleefrqkslewekqrlqyqkqvasleaqrkaLaekleliqs..aaykvqlekrkqkLesveldsqseiqrLrskleraqdtlea 211
                 + +  r e +++  k+ee + k +  e+++l + ++++sl+ +++ L  ++e +++  + +k+   + +q   + +   q ++q L+ + e a +tl  
  CCE30002.1   7 KMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETaiKDHKKVADEGQQHGTQ-NETLQRRLQLLEEEAEDADKTLRE 104
                 566778999***************************************99999999655666666666666455.557899*****************9 PP

       CEP63 212 qelelerLrllveelgkskrvlleekqeleeelresekqlqvleeekselkqtl 265
                  + +l +      +   + + l++e+ + e++ +e  ++  +l++e++el++++
  CCE30002.1 105 ANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEI 158
                 99888888888888888889999***************************9876 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4  33.0   0.00036      0.08     174     321 ..      12     158 ..       2     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00036
      HMMR_N 174 eakekevsvkQedmeaklqvt.qknLeeskakvaqLkeklvslekekieekset..eklleyieelsnvseqlekykldiaqleellkekndeiesLks 269
                      e+++k e+++ k++++ q+nL +  ++++ L+ k+  le e   ek et  +   +  +e ++   q e  + +++ lee ++ +++ + +  +
  CCE30002.1  12 RLEADEAAAKVEELQTKVKSLeQENL-SKEQEITSLQHKNNLLEGE--VEKLETaiKDHKKVADEGQQHGTQNETLQRRLQLLEEEAEDADKTLREANE 107
                 44555888999********9834567.77889********999988..4555543377778888888888888999*******************9999 PP

      HMMR_N 270 sLeekeqelskqvkdlnekckllekekeelvreeee...keqtlsaEleelkekl 321
                 +L++ ++    ++   + k++ le+e+++  +++ee   k+ tl++Eleel++++
  CCE30002.1 108 KLRQTDV----KAGHYERKVQALEQERDQWEQKYEEmaqKHTTLQKELEELQNEI 158
                 9999999....8999999******8887776666652226778999*****9876 PP

>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.2    0.0094       2.1      67     136 ..       6      73 ..       1      80 [. 0.63
   2 ?    7.3  10.6     0.029       6.3      47     128 ..      66     152 ..      52     157 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0094
                 HHHHHHHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHH..HHHHHHH.HHHHHHHHHHHHHHHH CS
     T3SSipB  67 ekadqaksaadaatkkvdeaqkrlkeLaPdePekakleaaeqQagaaadalqad.ealqKkldaasklsek 136
                 ek++++  +ad+a +kv+e q+++k+L   e e    e++   ++ + + l+ + e+l+ ++  ++k++++
  CCE30002.1   6 EKMNSLRLEADEAAAKVEELQTKVKSL---EQENLSKEQEITSLQHKNNLLEGEvEKLETAIKDHKKVADE 73 
                 788899999******************...44444445555555544443332213355555555555555 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.029
                 THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------....-CHHHHHHHHH...HHHHHHHHHHHHHHH CS
     T3SSipB  47 elqtalseakgatddleaaiekadqaksaadaatkkvdeaqkrlkeLaPdePek....akleaaeqQagaa.adalqadealqKkld 128
                   +++ +e ++   + e  + +++ ++ +a++a+k + ea ++l + +     +    ++le+++ Q +++  + +q+  +lqK+l+
  CCE30002.1  66 DHKKVADEGQQHGTQNETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYerkvQALEQERDQWEQKyEEMAQKHTTLQKELE 152
                 334444444444445555666667777888888888888888888887665555111146788888888778999999999999986 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  14.0     0.039       8.7      32      95 ..       8      68 ..       1      76 [. 0.78
   2 ?    9.2  27.1    0.0077       1.7      29     125 ..      61     157 ..      54     161 .] 0.64

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.039
      APG6_N 32 lkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeeleale 95
                ++ l+ e++e+     ++eel+ +++ le+e  ++++e+  l++++  le e+++le   ++ +
  CCE30002.1  8 MNSLRLEADEA---AAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHK 68
                45555555554...46999999999999999999999999999999999999999998777655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0077
      APG6_N  29 eeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaq 125
                 e+  k  kk ++e +++ ++ e l+++l+ le+e e++ + L+e+ ++ ++ + +   +e++ +ale+e ++  ++y e + +++ l++el+ l+++
  CCE30002.1  61 ETAIKDHKKVADEGQQHGTQNETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNE 157
                 3333333333333333666677777777777777777777777777777777777777777777777777777777777777777777777777765 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  16.2    0.0046         1      11      92 ..      19      96 ..       9     109 .. 0.78
   2 ?    3.4  14.6      0.39        87      15      90 ..      82     154 ..      79     161 .] 0.61

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0046
  TMF_TATA_bd 11 vqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGeksE 92
                 +  ve+l++++++lE E  s ++e+++l+++ + ++ e+ kl +   + k+ ++e ++  ++ e lq+r    L+ll e +E
   CCE30002.1 19 AAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQHGTQNETLQRR----LQLLEEEAE 96
                 5679**********************************9999887777777777766666666666666....455555555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.39
  TMF_TATA_bd  15 erlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGek 90 
                  e l+ +++ lE E + + ++l    +  +++r+  vk  +   ++++l++e ++ e+++ee+ +++ tl + l e 
   CCE30002.1  82 ETLQRRLQLLEEEAEDADKTL---REANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEEL 154
                  556667777777666555443...4455566666677777777777777777777777777777777766555443 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.5    0.0022      0.48       7      33 ..     131     157 ..     131     160 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0022
        ZapB   7 eqLEskiqkaidtitlLqmeieeLkee 33 
                 +q E+k++++ ++ t+Lq+e+eeL+ e
  CCE30002.1 131 DQWEQKYEEMAQKHTTLQKELEELQNE 157
                 677**********************87 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  28.8   0.00063      0.14      37     180 ..       5     148 ..       2     151 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00063
        Fez1  37 kaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe.aeeleelk 134
                 k ++  lr + +e  ++++el++++++ ++e+   e+e+   +++++ll+ +vekle+ +k+ ++ + e +++ +++++ +++ +  ++e +++ ++l+
  CCE30002.1   5 KEKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQHGTQNETLQRRLQLLEEEaEDADKTLR 103
                 555556666666666777777777777777777777788888888888888888888888888886666444444333222222222222244555566 PP

        Fez1 135 reverlraeLkeerqkkeeqassFeqERrtWqeeKekVirYqkqLQ 180
                 +  e+lr+    +  + e+++++ eqER +W++  e   + +  LQ
  CCE30002.1 104 EANEKLRQT-DVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQ 148
                 666666654.555667799999**********99887766666666 PP

>> Surfac_D-trimer  Lung surfactant protein D coiled-coil trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         8   1.8e+03       7      19 ..      21      33 ..      19      38 .. 0.78
   2 ?   11.1   0.0    0.0013      0.29       3      29 ..      45      71 ..      43      78 .. 0.90
   3 ?    0.8   0.1       2.1   4.6e+02       5      21 ..     141     157 ..     138     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 8
                     HHHHHHHHHHHHH CS
  Surfac_D-trimer  7 rveaLeGklqrLq 19
                     +ve L+ k++ L+
       CCE30002.1 21 KVEELQTKVKSLE 33
                     6788888888876 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0013
                     HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Surfac_D-trimer  3 aLrQrveaLeGklqrLqnafsqYkKav 29
                     +L+ + + LeG++ +L+ a+   kK++
       CCE30002.1 45 SLQHKNNLLEGEVEKLETAIKDHKKVA 71
                     78888899*****************86 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 2.1
                      HHHHHHHHHHHHHHHHH CS
  Surfac_D-trimer   5 rQrveaLeGklqrLqna 21 
                       Q+ + L+ +l  Lqn 
       CCE30002.1 141 AQKHTTLQKELEELQNE 157
                      589999*********95 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   9.9     0.083        18      82     138 ..       6      62 ..       1      71 [. 0.58
   2 ?   11.6  25.0    0.0011      0.24      51     151 ..      49     155 ..      44     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.083
  Jnk-SapK_ap_N  82 eiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklhe 138
                    e+ ++++ e+ e  +kve+l+++++ le+   + ++++++l++k++ l+ e +kl++
     CCE30002.1   6 EKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLET 62 
                    444555666666666666666666666655555566666666666666666666654 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0011
  Jnk-SapK_ap_N  51 eleelreeleqLeteyerekelrkrae......eeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklhere 140
                    + ++l+ e+e+Let  ++ k+   + +      e+l++  + +eee+++ ++ + + +e+ r+ ++ka  ++ ++++le++ ++++++y++  +++
     CCE30002.1  49 KNNLLEGEVEKLETAIKDHKKVADEGQqhgtqnETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKH 144
                    4556666777777766665554444444555558999999999999999999999***************************************** PP

  Jnk-SapK_ap_N 141 tellkklkelv 151
                    t l k+l el 
     CCE30002.1 145 TTLQKELEELQ 155
                    ***99999875 PP

>> Rab5-bind  Rabaptin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  10.4      0.08        18      53     121 ..      18      85 ..       1      87 [. 0.38
   2 ?   11.1  12.8   0.00086      0.19     211     280 ..      83     152 ..      79     156 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.08
   Rab5-bind  53 lkelseetskqvselakrvkksEllleeLqqafskakrniqeqlavlvksreqvedelvrLqkdyesLl 121
                   ++ ee  ++v+ l + +   E+  ++Lq + +  + +  e+l+ ++k  ++v+de ++ + ++e L+
  CCE30002.1  18 AAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGE-VEKLETAIKDHKKVADEGQQHGTQNETLQ 85 
                 222233333333333333333444444444333322222.23455555555555555555555555544 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00086
   Rab5-bind 211 slkveleeikvekeslekslaektrqldklqtikselEeqlkelekekaaveqlvleeknkaqrLqtELD 280
                 +l+ +l+ +  e e+ +k+l+e++++l++     ++ E +++ le+e+ + eq+  e  +k ++Lq+EL+
  CCE30002.1  83 TLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELE 152
                 66677788888999999***************************************************97 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.5     0.038       8.5      62      92 ..       6      36 ..       1      39 [. 0.70
   2 ?   12.5   4.3    0.0011      0.24      21      79 ..      41      96 ..      39      97 .. 0.89
   3 ?    8.6  12.8     0.019       4.2       3      79 ..      82     159 ..      80     161 .] 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.038
        SOGA 62 skeaelkeeLklarlqineLsgkvvkLqven 92
                +k ++l+ e   a  +++eL+ kv+ L+ en
  CCE30002.1  6 EKMNSLRLEADEAAAKVEELQTKVKSLEQEN 36
                4455566666677778888888888888888 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.0011
        SOGA 21 rslseleeenkqlteeLnkyksklgeeessleeeeeassdsskeaelkeeLklarlqin 79
                ++++ l+++n+ l+ e++k+ +  +++++ ++e   ++++ +++++l+ +L+l +++++
  CCE30002.1 41 QEITSLQHKNNLLEGEVEKLETAIKDHKKVADE---GQQHGTQNETLQRRLQLLEEEAE 96
                57999**********************998866...77788899**********99985 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.019
        SOGA   3 aeLrrhLqfveeEaeLlrrslseleeenkqlteeLnkyksklgeeessleeee.eassdsskeaelkeeLklarlqin 79 
                 + L+r+Lq+ eeEae   + l e +e+ +q   +  +y  k ++ e++ ++ e + ++ ++k+++l++eL+  + +i 
  CCE30002.1  82 ETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEqKYEEMAQKHTTLQKELEELQNEIG 159
                 679**************************************999998888766345566678899*****99988885 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   6.5     0.016       3.5      14      81 ..       3      69 ..       1      89 [. 0.83
   2 ?   10.2   6.7    0.0044      0.96       6      70 ..      96     159 ..      92     161 .] 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.016
     DUF2203 14 llkelleelralrkeleeleeeleeakaeaekseaaeleaeleeleaeieelveeieelGvevkdlea 81
                ++ke+++ lr  ++e++ ++eel+++ ++ e+ e  ++e+e+++l+++ + l  e+e+l   +kd ++
  CCE30002.1  3 RIKEKMNSLRLEADEAAAKVEELQTKVKSLEQ-ENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKK 69
                67778888888888888888888888888654.48899999999999999999999999999999865 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0044
     DUF2203   6 eeAnalLpllkelleelralrkeleeleeeleeakaeaekseaaeleaeleeleaeieelveeie 70 
                 e+A ++L + +e+l++   ++ ++e+++++le+++++ e ++++e+++++++l++e+eel +ei 
  CCE30002.1  96 EDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWE-QKYEEMAQKHTTLQKELEELQNEIG 159
                 678888888888888888888888888888888888865.4599999999999999999999986 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   8.0      0.21        46      16      60 ..      18      66 ..       8     114 .. 0.82
   2 ?    9.0   0.7    0.0088       1.9      16      61 ..     119     161 .]     107     161 .] 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.21
     NPV_P10 16 vddkVdalqqqvddvq.enl...pdvtelnekLdaqsaqLaeletkven 60
                   kV+ lq++v++++ enl   +++t l++k + +  ++++let++++
  CCE30002.1 18 AAAKVEELQTKVKSLEqENLskeQEITSLQHKNNLLEGEVEKLETAIKD 66
                5679999999999986245422256777788888888888888888776 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0088
     NPV_P10  16 vddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenI 61 
                  + kV+al+q+ d+ +++ ++   + +k   ++++L+el++++ nI
  CCE30002.1 119 YERKVQALEQERDQWEQKYEE---MAQKHTTLQKELEELQNEIGNI 161
                 4689*******9999997777...88999999999****9999887 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.0     0.021       4.7      46      72 ..      17      43 ..       2      52 .. 0.67
   2 ?    7.5  11.4     0.015       3.4      14      74 ..      42     104 ..      38     116 .. 0.82
   3 ?    6.0   5.2     0.043       9.5      11      59 ..     110     159 ..     102     161 .] 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.021
  Phage_GP20 46 kkakdneeLqkqieelqaknkkakaey 72
                ++a  +eeLq+++++l+++n  +++e 
  CCE30002.1 17 EAAAKVEELQTKVKSLEQENLSKEQEI 43
                556677888888888888887766654 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.015
  Phage_GP20  14 dit..kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyea 74 
                  it  + k + +e e+++l++ +kd  k  ++ ++    ne+Lq+ ++ l++++++a+++  +
  CCE30002.1  42 EITslQHKNNLLEGEVEKLETAIKDHKKVADEGQQHGTQNETLQRRLQLLEEEAEDADKTLRE 104
                 56666778888999*************9999999999********************997543 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.043
  Phage_GP20  11 ngkdit....kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqie 59 
                  ++d+     + k++ +e+erd+++++ ++  ++  +L+k+    eeLq++i 
  CCE30002.1 110 RQTDVKaghyERKVQALEQERDQWEQKYEEMAQKHTTLQKE---LEELQNEIG 159
                 56677556668999999999999999999999999999777...999999885 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.7     0.027       5.9      20      82 ..       6      65 ..       1      66 [. 0.73
   2 ?    5.3   2.4      0.11        25      29      72 ..      81     128 ..      68     135 .. 0.53
   3 ?   10.3   2.3    0.0031      0.69      21      55 ..     122     156 ..     118     161 .] 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.027
     BLOC1_2 20 edyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavs 82
                e+++ L     +a++k+++l+++++sle++    ++   e+ ++  + + +e +v++Le+a++
  CCE30002.1  6 EKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQ---EITSLQHKNNLLEGEVEKLETAIK 65
                566666666778888888888888888887766666...777777777788888888888775 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.11
     BLOC1_2  29 Neaasekykklkdvaaslekkleklnek....yeelqpylqqidqiek 72 
                 Ne+ +++ + l+++a+++ k+l + nek    + +   y ++++++e+
  CCE30002.1  81 NETLQRRLQLLEEEAEDADKTLREANEKlrqtDVKAGHYERKVQALEQ 128
                 566666666666666555555544443300003344444555555544 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0031
     BLOC1_2  21 dyklLeklNeaasekykklkdvaaslekkleklne 55 
                 +++ Le+   + ++ky++++++   l+k+le+l++
  CCE30002.1 122 KVQALEQERDQWEQKYEEMAQKHTTLQKELEELQN 156
                 56778888888888888888888888888888876 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.3    0.0036      0.79      14      47 ..       2      35 ..       1      38 [. 0.90
   2 ?    2.9   1.5      0.58   1.3e+02       5      18 ..      56      69 ..      38      83 .. 0.50
   3 ?    6.2   2.3     0.053        12       9      42 ..      77     110 ..      75     113 .. 0.86
   4 ?    9.1   2.9    0.0068       1.5       9      46 ..     119     156 ..     111     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0036
        XhlA 14 dnleervdkleekaaeaeekiknleedlkklesn 47
                d ++e+++ l + a+ea +k+++l+ ++k+le+ 
  CCE30002.1  2 DRIKEKMNSLRLEADEAAAKVEELQTKVKSLEQE 35
                78899999999********************986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.58
        XhlA  5 rlerietkldnlee 18
                ++e++et ++++++
  CCE30002.1 56 EVEKLETAIKDHKK 69
                23333333333333 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.053
        XhlA   9 ietkldnleervdkleekaaeaeekiknleedlk 42 
                 + t+ ++l+ r++ lee a+ a++ + +++e+l 
  CCE30002.1  77 HGTQNETLQRRLQLLEEEAEDADKTLREANEKLR 110
                 55677788899********************996 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0068
        XhlA   9 ietkldnleervdkleekaaeaeekiknleedlkkles 46 
                  e+k+  le++ d+ e+k +e+ +k   l+++l++l++
  CCE30002.1 119 YERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQN 156
                 5899999***559**********************997 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  14.1     0.058        13      65     134 ..       4      73 ..       1      85 [. 0.76
   2 ?    8.9  29.2    0.0054       1.2      10     132 ..      29     158 ..      29     161 .] 0.81

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.058
    KASH_CCD  65 leeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekdelkkklkeLlkekae 134
                 ++e ++ l+  + e   k ++l+++ k le+en s +++i+sLq +n  l  e ++l++ +k+  k  +e
  CCE30002.1   4 IKEKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADE 73 
                 5666777777777777788888888999999999999999999999999988888888888876666655 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0054
    KASH_CCD  10 vadLqlnNkkLaeenskLkkavetaeetnakLteeieeLkkklkstQqalqka.......klleeEleelkalvkeleEkrarlkaqnkqlekenqsLi 101
                 v++L++ N + ++e ++L+++ +  e + +kL   i++ kk +  +Qq   +        +lleeE e++ ++++e +Ek ++   ++ + e+  q L+
  CCE30002.1  29 VKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQHGTQNetlqrrlQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALE 127
                 6788888888888888888888888888888888888888877777765444311111125799*********************************** PP

    KASH_CCD 102 akiesLqeenikllaekdelkkklkeLlkek 132
                 ++ ++ +++ + +++ + +l+k l+eL +e+
  CCE30002.1 128 QERDQWEQKYEEMAQKHTTLQKELEELQNEI 158
                 ************************9998775 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  16.8    0.0072       1.6     152     249 ..       1      98 [.       1     101 [. 0.94
   2 ?    8.3  10.8    0.0042      0.94      38      96 ..     100     158 ..      96     161 .] 0.93

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0072
    CALCOCO1 152 LeRlkerakkalaqrkeeeaerkqlqakleqseeelrslskelqelrnslaerdtqvlqLqdtittltqkLttAqrkeaenEallkelrslqerlaaS 249
                 ++R+ke+++ +     e  a  ++lq+k+++ e+e+ s  +e+ +l+ + +  + +v +L+  i   ++  ++ q++ ++nE+l++ l+ l e ++  
  CCE30002.1   1 MDRIKEKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQHGTQNETLQRRLQLLEEEAEDA 98 
                 79*******9999999999999******************************************************************9999987765 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0042
    CALCOCO1  38 eclreraeLlqaqeaanrqrekekeeykrdreeldrerkelesrveelkeelkesrekv 96 
                  +lre +e l+++++   + e+  +  +++r++++++ +e+ ++   l++el+e+++++
  CCE30002.1 100 KTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEI 158
                 6799*************************************************999886 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   3.4      0.16        36      45      79 ..       9      43 ..       2      44 .. 0.75
   2 ?    1.8   5.7       1.5   3.3e+02       1      36 [.      21      56 ..      21      79 .. 0.70
   3 ?   11.9   3.5    0.0011      0.24       4      34 ..      83     113 ..      80     116 .. 0.92
   4 ?    9.3   7.7    0.0069       1.5       5      40 ..     119     154 ..     114     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.16
        KELK 45 klamqefsevneklselrsqkqklsRqlrdkeeEl 79
                +  + e  e+  k++el+++++ l  ++  ke E+
  CCE30002.1  9 NSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEI 43
                44556777888888888888888888888888886 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 1.5
        KELK  1 klkeLekqlrllkqEkeelqkelaeaqErlksqkke 36
                k+ eL+ ++++l+qE  + ++e++ +q +    + e
  CCE30002.1 21 KVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGE 56
                677899999999999988888888888887665544 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.0011
        KELK   4 eLekqlrllkqEkeelqkelaeaqErlksqk 34 
                 +L+++l+ll++E e++ k l ea+E+l++ +
  CCE30002.1  83 TLQRRLQLLEEEAEDADKTLREANEKLRQTD 113
                 79**************************976 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0069
        KELK   5 LekqlrllkqEkeelqkelaeaqErlksqkkeLkda 40 
                  e+++++l+qE+++ +++++e+  +  + +keL + 
  CCE30002.1 119 YERKVQALEQERDQWEQKYEEMAQKHTTLQKELEEL 154
                 799******************************885 PP

>> HHV-5_US34A  Herpesvirus US34A protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.0    0.0022      0.48      33      56 ..     122     145 ..     114     150 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0022
  HHV-5_US34A  33 avqrvkqerdahlrryeerlqknr 56 
                   vq + qerd   ++yee  qk  
   CCE30002.1 122 KVQALEQERDQWEQKYEEMAQKHT 145
                  599******************975 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.7     0.089        20      37      64 .]       3      30 ..       1      30 [. 0.89
   2 ?   10.8   2.5    0.0018      0.39      26      50 ..      20      44 ..      17      46 .. 0.85
   3 ?    8.0   1.9     0.014         3      24      54 ..      39      69 ..      37      77 .. 0.87
   4 ?    3.8   3.2      0.28        62      29      58 ..      82     108 ..      75     115 .. 0.67
   5 ?    6.9   4.2     0.029       6.5      26      56 ..     128     158 ..     118     161 .] 0.71

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.089
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 37 aLekeNksLkseleelkkevekLkskvk 64
                 +++++ sL+ e++e + +ve+L++kvk
  CCE30002.1  3 RIKEKMNSLRLEADEAAAKVEELQTKVK 30
                68999******************99975 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0018
                HHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 26 aeieeLerrvkaLekeNksLksele 50
                a++eeL+++vk Le+eN s  +e+ 
  CCE30002.1 20 AKVEELQTKVKSLEQENLSKEQEIT 44
                689**************97777765 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.014
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 24 KqaeieeLerrvkaLekeNksLkseleelkk 54
                K++ei  L+ +   Le+e ++L   ++  kk
  CCE30002.1 39 KEQEITSLQHKNNLLEGEVEKLETAIKDHKK 69
                8999999999999999999999999998887 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  29 eeLerrvkaLekeNksLkseleelkkevek 58 
                 e L+rr + Le+e ++  ++l e ++   k
  CCE30002.1  82 ETLQRRLQLLEEEAEDADKTLREANE---K 108
                 67888888888888855554444443...3 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  26 aeieeLerrvkaLekeNksLkseleelkkev 56 
                 +e ++ e++ +++ ++ ++L++eleel++e+
  CCE30002.1 128 QERDQWEQKYEEMAQKHTTLQKELEELQNEI 158
                 4556667777777777777777777777776 PP

>> DUF3287  Protein of unknown function (DUF3287)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.3      0.89     2e+02      73     109 ..       3      39 ..       1      54 [. 0.53
   2 ?    8.2   0.4    0.0088         2      59      91 ..      62      94 ..      54     109 .. 0.84
   3 ?    5.9   0.7     0.043       9.6      84     105 ..     115     136 ..      96     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.89
     DUF3287  73 klgkkrqtleaRiarveRklreleseprdWeelelde 109
                 +++ k+++l     +   k+ el+ + +  e+ +l++
  CCE30002.1   3 RIKEKMNSLRLEADEAAAKVEELQTKVKSLEQENLSK 39 
                 3444555553333344445555555555555555544 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0088
     DUF3287 59 kvvekHrrlcderqklgkkrqtleaRiarveRk 91
                  ++ H++ +de q+ g + +tl++R+  +e +
  CCE30002.1 62 TAIKDHKKVADEGQQHGTQNETLQRRLQLLEEE 94
                56789******************9999877765 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.043
     DUF3287  84 RiarveRklreleseprdWeel 105
                 +  + eRk++ le e  +We+ 
  CCE30002.1 115 KAGHYERKVQALEQERDQWEQK 136
                 455679*************975 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  14.0    0.0036       0.8      15      72 ..       9      66 ..       2      68 .. 0.72
   2 ?    0.4  17.2         3   6.7e+02      14      72 ..      88     146 ..      68     161 .] 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0036
  TMF_DNA_bd 15 aqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlke 72
                + L+ E  + ++k  +l +++k+L ++n   e+ei++l+ k++ le e+e+le   k 
  CCE30002.1  9 NSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKD 66
                5566677777777777888888888888888888888888888888888888766655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 3
  TMF_DNA_bd  14 IaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlke 72 
                 ++ L eE e+  k+ ++ n+++ + + k+ + e +++ l+++ ++ e++ ee+ +++++
  CCE30002.1  88 LQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTT 146
                 56788999999999999999999999999999999999999999999999998888765 PP

>> DUF4686  Domain of unknown function (DUF4686)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  24.7    0.0035      0.77     154     279 ..       2     123 ..       1     125 [. 0.79
   2 ?    7.1  10.9     0.012       2.6     135     196 ..     100     159 ..      97     161 .] 0.90

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0035
     DUF4686 154 kqLeekikeaseneaklkqqlqeeqqkrklLdqnveeLqqqvrslrdkeaqlertnsqqqlriqqqeaqlkklenekrksdehlksnqeLsekLsslqq 252
                 ++++ek++ ++ ++++  ++++e q k k L+q+     q + sl++k++ le  + ++++ i+++++          + ++h  +n+ L+ +L  l  
  CCE30002.1   2 DRIKEKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVA-------DEGQQHGTQNETLQRRLQLLEE 93 
                 57899************************************************99888866666554433.......3356666777777777777777 PP

     DUF4686 253 ekealq...eelqqvLkqldahvrkynekq 279
                 e e      +e ++ L+q d++  +y+ k 
  CCE30002.1  94 EAEDADktlREANEKLRQTDVKAGHYERKV 123
                 766554111566778999999999999885 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.012
     DUF4686 135 qkLeqa.hkvrltearilekkqLeekikeaseneaklkqqlqeeqqkrklLdqnveeLqqqvr 196
                 + L++a +k+r t++   +  + e+k++ ++++ ++  q+++e  qk   L+++ eeLq+ + 
  CCE30002.1 100 KTLREAnEKLRQTDV---KAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEIG 159
                 678999899999999...6678899**********************************9875 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  11.2     0.011       2.4       8      67 ..      15      80 ..       8      89 .. 0.76
   2 ?   -0.3  16.7       6.2   1.4e+03       6      73 ..      85     156 ..      58     161 .] 0.50

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.011
      CENP-H  8 rdelssellklsqelrelqeeltevekenlrlkrknrelaaellelakekesek......eklkee 67
                 de++ ++++l++++++l++e  + e+e+ +l++kn+ l  e+++l+ + + +k      +++  +
  CCE30002.1 15 ADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKkvadegQQHGTQ 80
                6999***************************************76666666666554433222222 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 6.2
      CENP-H   6 eqrde.lssellklsqelrelqeeltevekenlrlkrknrelaael.l.elakekesek.eklkeeleklea 73 
                 ++r + l +e+++  + lre++e+l ++ +++ + +rk + l +e  + e++ e++++k ++l++ele+l++
  CCE30002.1  85 QRRLQlLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERdQwEQKYEEMAQKhTTLQKELEELQN 156
                 222220223344444444444444444444444444444444444433444444444444445555555555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.1     0.031       6.9      66     121 ..       6      61 ..       1      76 [. 0.51
   2 ?    6.5   5.7     0.036         8      60     123 ..      80     143 ..      68     155 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.031
     DUF1664  66 sridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 ++++++  + de ++  +e++ +v++++++  + +++++s+++  + le+++e++e
  CCE30002.1   6 EKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLE 61 
                 34444444444444444444444444444444444444444444444444444444 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.036
     DUF1664  60 tkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerieek 123
                 + + L++r++ ++++ ++  ++ +e +e++ +   +  + +++v+++++   ++e+k e++ +k
  CCE30002.1  80 QNETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQK 143
                 4556777777777777777777777777777777777777777777777777777777777654 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.7     0.003      0.67      51      79 ..     128     156 ..     115     161 .] 0.58

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.003
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  51 aefeewkqaaqklvdaLeeisealkqaan 79 
                 +e ++w q+ ++++++ ++++++l++  n
  CCE30002.1 128 QERDQWEQKYEEMAQKHTTLQKELEELQN 156
                 44455555555555555555555554433 PP

>> Cortex-I_coil  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.1     0.041       9.1      23      67 ..       6      50 ..       1      65 [. 0.77
   2 ?    7.0   6.7      0.03       6.7      21      70 ..      60     112 ..      49     124 .. 0.74
   3 ?    3.9   0.4      0.28        63       2      27 ..     128     153 ..     127     159 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.041
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil 23 nslesekvsreelikqkdelesllasleseaaerekrlreleakl 67
                   + ++s ++  +e + + +el+  ++sle+e+  +e+ +  l+ k 
     CCE30002.1  6 EKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKN 50
                   556777788889999999999999999999999999999999883 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.03
                    HHHHHHHHH.HHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil  21 lenslesek.vsre..elikqkdelesllasleseaaerekrlreleakldea 70 
                    le +++  k v+ e  +   q + l+  l++le+ea++ +k lre + kl ++
     CCE30002.1  60 LETAIKDHKkVADEgqQHGTQNETLQRRLQLLEEEAEDADKTLREANEKLRQT 112
                    555555444033322245679999***********************999765 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.28
                    XXXXXXXXXXXXHHHHHHHHHHHHHH CS
  Cortex-I_coil   2 eekerleasknelanklaglensles 27 
                    +e+++ e   +e+a+k ++l++ le 
     CCE30002.1 128 QERDQWEQKYEEMAQKHTTLQKELEE 153
                    589999999999****9999999985 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   6.4      0.15        33      11      55 ..       7      58 ..       2      66 .. 0.51
   2 ?    5.5   7.6       0.1        22      15      71 .]      38      94 ..      32      94 .. 0.64
   3 ?    5.7   8.1     0.089        20      11      68 ..      49     109 ..      45     112 .. 0.81
   4 ?    5.7   6.8     0.088        20      26      62 ..     116     152 ..      99     160 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.15
         CLZ 11 KdglLDeeaakagaeqkeleekverLes.......sLeaLqtrlarLlaeye 55
                K++ L  ea +a a+ +el++kv++Le+       ++ +Lq + + L +e+e
  CCE30002.1  7 KMNSLRLEADEAAAKVEELQTKVKSLEQenlskeqEITSLQHKNNLLEGEVE 58
                6666666666666666666666666654111111134445555555554444 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.1
         CLZ 15 LDee.aakagaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRitkLEkk 71
                  e+   + + +++ le  ve+Le++++  ++++a   +++ + +++L++R++ LE++
  CCE30002.1 38 SKEQeITSLQHKNNLLEGEVEKLETAIKD-HKKVADEGQQHGTQNETLQRRLQLLEEE 94
                33333444445555556666666666665.56788888899999***********985 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.089
         CLZ  11 KdglLDeeaakag...aeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRitkL 68 
                 K +lL+ e++k +   +++k++ +  ++  ++ e+Lq rl+ L +e e ++++L++  +kL
  CCE30002.1  49 KNNLLEGEVEKLEtaiKDHKKVADEGQQHGTQNETLQRRLQLLEEEAEDADKTLREANEKL 109
                 8899999966666556888899999999999999999999999999999999998876666 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.088
         CLZ  26 qkeleekverLessLeaLqtrlarLlaeyessqrkLk 62 
                 +   e+kv+ Le++ ++ +++++ + +++++ q++L+
  CCE30002.1 116 AGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELE 152
                 3445555555555555555555555555555555553 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4  18.3      0.21        47      64     156 ..       6      97 ..       1     106 [. 0.85
   2 ?    7.6  17.3     0.012       2.6      45     121 ..      80     157 ..      75     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.21
  HAUS-augmin3  64 edvellevileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelraenaetnavLqqlteeakq 156
                   e+ ++l+ +++e  +++e+L+++++ L++e+ +k+++   Lq   + l+ e +kle++ k  kk+  e q++ + +n  +++ Lq l eea+ 
    CCE30002.1   6 EKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQH-GTQNETLQRRLQLLEEEAED 97 
                   56677788888999999*****************************************99999999998876.67789999999999999876 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.012
  HAUS-augmin3  45 egeaLeeaLktiepsdlkq.edvellevileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqelrkleee 121
                   + e+L+  L+ +e++ ++  ++ +++++ l + + ++ ++e+++q+L++e++  +++++++    ++lq+el++l++e
    CCE30002.1  80 QNETLQRRLQLLEEEAEDAdKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNE 157
                   57899999999995555445999999************************************************9987 PP

>> CASP_C  CASP C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.5   0.00063      0.14      94     129 ..       2      37 ..       1      39 [. 0.97
   2 ?    2.9  15.1      0.26        58      11     122 ..      40     159 ..      37     161 .] 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00063
      CASP_C  94 DRFrkrnaeLEeelrkqeetvsslraeiaslqkDNl 129
                 DR +++++ L  e ++   +v++l+++++sl+++Nl
  CCE30002.1   2 DRIKEKMNSLRLEADEAAAKVEELQTKVKSLEQENL 37 
                 9**********************************8 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.26
      CASP_C  11 eaeleeqkeLnekLEndllkvqseasnaskasdassagsevsrka.ese.......grksptssiisgaeesesaesss......essiLpivtsQRDR 95 
                 e+e++++++ n+ LE +++k++++ + ++k  d+   ++++++++ +++            + ++  +a+e+ ++   +       +  ++ + + RD 
  CCE30002.1  40 EQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEG-QQHGTQNETlQRRlqlleeeA--EDADKTLREANEKLRQ---TdvkaghYERKVQALEQERDQ 132
                 67777888888888888888877776654444333.334444444333233443221..2222222222222222...12224456667889999**** PP

      CASP_C  96 FrkrnaeLEeelrkqeetvsslraeia 122
                 + ++ +e+ ++  + ++++++l++ei 
  CCE30002.1 133 WEQKYEEMAQKHTTLQKELEELQNEIG 159
                 ************************996 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   3.6      0.27        60      80     113 ..       2      35 ..       1      42 [. 0.88
   2 ?    6.5   0.9     0.034       7.5       2      40 ..      40      78 ..      39      82 .. 0.82
   3 ?    4.0   2.4       0.2        45      80     110 ..      82     112 ..      79     118 .. 0.65
   4 ?   11.1   5.8    0.0013      0.29      82     120 .]     119     157 ..     117     157 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  80 ellkkkleelekqlekleeeleklkdqittlean 113
                 + +k+k+++l+   ++  +++e+l++++++le++
  CCE30002.1   2 DRIKEKMNSLRLEADEAAAKVEELQTKVKSLEQE 35 
                 67999************************99986 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.034
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT.-TT-E CS
   Prefoldin  2 keeleslqaelaqlkeaieelektletlktlkkedegke 40
                ++e++slq + + l+ + e+le++++  k++ +e++ + 
  CCE30002.1 40 EQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQHG 78
                689999999999999999999999999888888666655 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  80 ellkkkleelekqlekleeeleklkdqittl 110
                 e+l+++l+ le+  e+  + l+++ +++ ++
  CCE30002.1  82 ETLQRRLQLLEEEAEDADKTLREANEKLRQT 112
                 5666677777766666666666666666665 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  82 lkkkleelekqlekleeeleklkdqittleanlaqlyqk 120
                 +++k++ le+ +++ e++ e+ ++++ttl+++l++l+++
  CCE30002.1 119 YERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNE 157
                 579*********************************996 PP

>> DUF4618  Domain of unknown function (DUF4618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3  27.1      0.43        95      78     225 ..       3     160 ..       1     161 [] 0.67

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.43
     DUF4618  78 keekklekLeqqleqlnakvqklqeelnvLst.YkDkeYpvkavqIan..lvrqlqqlk...dsqqdelde......leelikevleklskkiqkkkek 164
                 ++++k+++L+ ++++  akv++lq++++ L+     ke  + ++q +n  l  ++++l+   +++++  de       +e +++ l+ l+++++   +k
  CCE30002.1   3 RIKEKMNSLRLEADEAAAKVEELQTKVKSLEQeNLSKEQEITSLQHKNnlLEGEVEKLEtaiKDHKKVADEgqqhgtQNETLQRRLQLLEEEAEDA-DK 100
                 568899999999999999999999999999752345555555555332213444444441112333333331111114566677777777766554.45 PP

     DUF4618 165 llkslaektlkatqeaLlqktlenqvlkkeiekfrefieeleeeipeLkaeveqLqaqaee 225
                  l+++ +++l++t     +  ++ q+l++e +++ ++ ee+ ++  +L++e+e+Lq+++ +
  CCE30002.1 101 TLREA-NEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEIGN 160
                 55555.566777788888999999********************************99876 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0  17.1       2.7     6e+02      10     109 ..       6     108 ..       1     118 [. 0.49
   2 ?    6.1  13.0     0.036         8      63     102 ..     118     157 ..      79     160 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 2.7
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH CS
        SHE3  10 eqiDaLtktnlqLtqqsqeLleklelaqkkeskflenlaslkhENdnLsslLkRKerrlkdlek...elselkesveelklekkqlkkrlenssasete 105
                 e++ +L  +  +   + +eL  k ++ ++ + +  ++++sl+h N+ L   +++ e  +kd  k   e +++ +++e l+ + + l++++e+  ++  e
  CCE30002.1   6 EKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKvadEGQQHGTQNETLQRRLQLLEEEAEDADKTLRE 104
                 444444445555555556666666666666666666666666666666666666666666644300033334444444444433333333333333333 PP

                 HHHH CS
        SHE3 106 leee 109
                  +e+
  CCE30002.1 105 ANEK 108
                 3333 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH CS
        SHE3  63 RKerrlkdlekelselkesveelklekkqlkkrlenssas 102
                   er+++ le+e  + ++++ee+++++++l+k+le+++++
  CCE30002.1 118 HYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNE 157
                 4589999999999999999999999999999999999875 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   1.9     0.067        15      35      67 ..       3      35 ..       2      39 .. 0.90
   2 ?    5.7   4.2     0.091        20      24      62 ..      28      65 ..      28      73 .. 0.65
   3 ?    2.2   1.1       1.2   2.6e+02      39      68 ..      66      95 ..      64     103 .. 0.80
   4 ?    9.4   6.8    0.0062       1.4      21      61 ..     119     158 ..      97     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.067
  Fungal_TACC 35 kyqkkldklelenkslkqeieqLkkqleaerkE 67
                 ++++k+++l+le ++ +  +e+L+ ++++ ++E
   CCE30002.1  3 RIKEKMNSLRLEADEAAAKVEELQTKVKSLEQE 35
                 6799**********************9988777 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.091
  Fungal_TACC 24 KVkllkkgyeakyqkkldklelenkslkqeieqLkkqle 62
                 KVk l ++     ++++ +l+ +n+ l+ e+e+L+  ++
   CCE30002.1 28 KVKSLEQEN-LSKEQEITSLQHKNNLLEGEVEKLETAIK 65
                 555555554.33356777888888888888888877766 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 1.2
  Fungal_TACC 39 kldklelenkslkqeieqLkkqleaerkEK 68
                 +++k+  e +++ ++ e+L+++l++ ++E 
   CCE30002.1 66 DHKKVADEGQQHGTQNETLQRRLQLLEEEA 95
                 567888899999999999999999877775 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0062
  Fungal_TACC  21 HEqKVkllkkgyeakyqkkldklelenkslkqeieqLkkql 61 
                   E KV+ l ++   ++++k +++ +++ +l++e+e+L++++
   CCE30002.1 119 YERKVQALEQER-DQWEQKYEEMAQKHTTLQKELEELQNEI 158
                  599******998.79**********************9976 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  30.7     0.016       3.4     301     455 ..       2     156 ..       1     160 [. 0.71

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.016
     DUF3584 301 delkeaidelnqelsaakaklaakeselealeeqkkkyedadieklkadldqlpsirseleeleeeldalte..khqdvqek.ydrrkqkikeeleeel 396
                 d +ke+ + l+ e  +a ak+++ + ++  le+++   ++++i +l+ + + l+   ++le + ++++ + +  +++  q++ ++rr q ++ee e++ 
  CCE30002.1   2 DRIKEKMNSLRLEADEAAAKVEELQTKVKSLEQENLS-KEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADegQQHGTQNEtLQRRLQLLEEEAEDAD 99 
                 6678888888888888888888888888888877666.5567888888888888888888888888888764113333444414555566777777777 PP

     DUF3584 397 eklkerleaireekdrlkaaieealealesqlrkqleaqkeelneeekelesrlselkl 455
                 ++l+e +e++r++ ++   + e +++ale++  +q e++ ee+++++  l+++l+el+ 
  CCE30002.1 100 KTLREANEKLRQTDVK-AGHYERKVQALEQER-DQWEQKYEEMAQKHTTLQKELEELQN 156
                 7777778888888777.677777888888774.48888888888888888888888765 PP

>> Alanine_zipper  Alanine-zipper, major outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.4     0.088        20      18      39 ..       2      23 ..       1      24 [. 0.85
   2 ?    2.7   0.1      0.75   1.7e+02       1      16 [.      20      35 ..      20      51 .. 0.84
   3 ?    5.5   1.7       0.1        22       9      59 ..      49     109 ..      41     111 .. 0.61
   4 ?    6.1   4.1     0.065        14       2      65 ..      80     143 ..      79     146 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.088
  Alanine_zipper 18 aaaksaadeAkskAdeAaarAe 39
                    +++k++ ++ + +AdeAaa++e
      CCE30002.1  2 DRIKEKMNSLRLEADEAAAKVE 23
                    5788999999999999999987 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.75
  Alanine_zipper  1 aqveelqakadqaeqd 16
                    a+veelq+k+ ++eq+
      CCE30002.1 20 AKVEELQTKVKSLEQE 35
                    6899999999999986 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.1
  Alanine_zipper   9 kadqaeqdaaaaksaadeAkskAdeAaarAenA..........eaaAeeAqkaAeeanera 59 
                     k + +e ++++++ a ++ k+ Ade ++   +           e+ Ae+A k+  eane++
      CCE30002.1  49 KNNLLEGEVEKLETAIKDHKKVADEGQQHGTQNetlqrrlqllEEEAEDADKTLREANEKL 109
                     5555555555555555555555555555555555555566777888888888888888886 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.065
  Alanine_zipper   2 qveelqakadqaeqdaaaaksaadeAkskAdeAaarAenAeaaAeeAqkaAeeaneradrmFek 65 
                     q e lq++++ +e++a++a+++  eA +k ++   +A   e++ ++ +++ ++ +++ + m +k
      CCE30002.1  80 QNETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQK 143
                     678999999999****************9999999999999**9999**************999 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.9    0.0089         2      21      54 .]       2      35 ..       2      35 .. 0.95
   2 ?   10.2   2.4    0.0028      0.61      26      53 ..      35      62 ..      34      63 .. 0.90
   3 ?    3.4   2.3      0.37        81      35      54 .]      75      94 ..      66      94 .. 0.81
   4 ?    0.5   4.8         3   6.6e+02      27      53 ..      92     128 ..      90     129 .. 0.67
   5 ?    2.8   2.2      0.57   1.3e+02      36      53 ..     118     135 ..     107     140 .. 0.57
   6 ?    5.2   3.5       0.1        23      25      48 ..     135     158 ..     130     161 .] 0.84

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0089
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 21 ekkkakeeeleervkeLeeeNaqLrqkveqLeke 54
                ++ k+k+++l  ++ e  ++ ++L+ kv++Le+e
  CCE30002.1  2 DRIKEKMNSLRLEADEAAAKVEELQTKVKSLEQE 35
                5779****************************98 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0028
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 26 keeeleervkeLeeeNaqLrqkveqLek 53
                ++ + e+++ +L+ +N+ L+ +ve+Le+
  CCE30002.1 35 ENLSKEQEITSLQHKNNLLEGEVEKLET 62
                567789********************97 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.37
                HHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 35 keLeeeNaqLrqkveqLeke 54
                ++  ++N++L+++++ Le e
  CCE30002.1 75 QQHGTQNETLQRRLQLLEEE 94
                666789***********977 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 3
                 HHHHHHHHHHHHHHHHHH..........HHHHHHHHH CS
      bZIP_2  27 eeeleervkeLeeeNaqL..........rqkveqLek 53 
                 eee e+  k L+e N++L          ++kv++Le+
  CCE30002.1  92 EEEAEDADKTLREANEKLrqtdvkaghyERKVQALEQ 128
                 5677777789999999995555555555555555555 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.57
                 HHHHHHHHHHHHHHHHHH CS
      bZIP_2  36 eLeeeNaqLrqkveqLek 53 
                 + e++ ++L+q+ +q e+
  CCE30002.1 118 HYERKVQALEQERDQWEQ 135
                 555555555555554443 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  25 akeeeleervkeLeeeNaqLrqkv 48 
                 +k+ee++++   L++e ++L++++
  CCE30002.1 135 QKYEEMAQKHTTLQKELEELQNEI 158
                 789999999999999999999987 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.2      0.04       8.8      80     128 ..      20      67 ..       1      73 [. 0.73
   2 ?    7.5   8.1      0.02       4.4      38     117 ..      82     157 ..      70     161 .] 0.48

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.04
                 HHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  80 kksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqk 128
                  k  +el++++  l+++  ++e++i  Lq   + +e +++kLe++i+  
  CCE30002.1  20 AK-VEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDH 67 
                 33.3567778889999999999999999999999999999999999765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.02
                 CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH CS
   Fib_alpha  38 ekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqk 117
                 e+l+++l+ ++++ ++a+++ +e +++lr++  ++ + ++ ++ +++e +    + +++  +  ++   Lq+ le+++++
  CCE30002.1  82 ETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERD----QWEQKYEEMAQKHTTLQKELEELQNE 157
                 45666666666666666666666666666665555544333333333332....33333333333333333333333333 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  14.3    0.0096       2.1      76     142 ..       7      73 ..       1      85 [. 0.83
   2 ?    3.3  18.3      0.36        80      63     142 ..      77     153 ..      71     161 .] 0.62

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0096
     UPF0242  76 klteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelklelee 142
                 k+ +l+ + ++ + ++eelq + + L++e  +ke+e+  l+++n+ L+ + e+    ++++k+ ++e
  CCE30002.1   7 KMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADE 73 
                 44444444577788****************************************999*999998887 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.36
     UPF0242  63 eklekskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelklelee 142
                 +++++++l+ + ++l e+    +  +++l+e++e+ ++   +  + e++++ l++e  q ++k e++a+    l++elee
  CCE30002.1  77 HGTQNETLQRRLQLLEEEA---EDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEE 153
                 4555555555555555555...6666677777777777777777777777777777777777777777777766666665 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   8.2      0.33        74     176     244 ..       4      68 ..       1      78 [. 0.54
   2 ?   10.7  13.1   0.00079      0.18     168     239 ..      76     157 ..      69     160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.33
  Fmp27_WPPW 176 leeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesse 244
                 ++e +++l+ + ++   k+eel++k ++    l++e  + e+ei +l++k ++le  +e+l++  ++++
  CCE30002.1   4 IKEKMNSLRLEADEAAAKVEELQTKVKS----LEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHK 68 
                 5556666666666666666666666666....4555555555555555555555555555555544222 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00079
  Fmp27_WPPW 168 pervqkelleeRleeleeqiekleekleelelkseke..........deelkeeieelekeikelkeklefletlledlkes 239
                  + +q e l++Rl+ lee+ e+ +++l+e+++k +++           ++l++e ++ e++ +e+ +k+++l++ le+l+++
  CCE30002.1  76 QHGTQNETLQRRLQLLEEEAEDADKTLREANEKLRQTdvkaghyerkVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNE 157
                 5689******************************998888777777667777888888888888888888888888877765 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   2.9     0.085        19      18      46 ..       7      35 ..       1      36 [. 0.70
   2 ?    8.9   5.8    0.0058       1.3      18      51 ..      28      61 ..      26      73 .. 0.84
   3 ?    0.6   5.4       2.2   4.8e+02      18      52 ..      66     100 ..      61     111 .. 0.81
   4 ?    8.8   4.9    0.0062       1.4      18      52 ..     122     156 ..     118     159 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.085
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC 18 aykqlkqeiaalqaelaklkaeneeLeae 46
                ++ +l+ e ++  a++++l+ + ++Le+e
  CCE30002.1  7 KMNSLRLEADEAAAKVEELQTKVKSLEQE 35
                45667777777777777777777777776 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0058
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC 18 aykqlkqeiaalqaelaklkaeneeLeaevkdLk 51
                ++k+l+qe   +++e+ +l+ +n+ Le ev++L+
  CCE30002.1 28 KVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLE 61
                5688999999999999999999999999999994 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLks 52 
                 + k++  e ++   ++++l+ + + Le+e +d  +
  CCE30002.1  66 DHKKVADEGQQHGTQNETLQRRLQLLEEEAEDADK 100
                 66778888889999999**********99999854 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0062
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLks 52 
                 ++++l+qe+++ +++++++ ++   L++e+++L++
  CCE30002.1 122 KVQALEQERDQWEQKYEEMAQKHTTLQKELEELQN 156
                 57899***************************954 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  33.2     0.038       8.3     480     614 ..      15     156 ..       1     161 [] 0.71

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.038
        HOOK 480 ltelqelledanrrkneLetenrlanqrileLeaq.......veelqkalqeqgskaedssllkkkleehleklkevqeelqkkkeqleelepklssnk 571
                   e +++ e+ + ++++Le+en +++q i++L+++       ve l++a ++++  a++  + + + e+++ +l+ ++ee +   ++l e ++kl+++ 
  CCE30002.1  15 ADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKnnllegeVEKLETAIKDHKKVADEGQQHGTQNETLQRRLQLLEEEAEDADKTLREANEKLRQTD 113
                 334455566666666666666666666666655543333333777777777777777777777888888888888888888888888888888999999 PP

        HOOK 572 qkieeleeaLkkkdedlkameerYkkyveKAksViktLdpkqn 614
                  k  + e + ++ +++  + e++Y ++ +K  +  k L+  qn
  CCE30002.1 114 VKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQN 156
                 9999999999999999999999999999999998888887776 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   8.9    0.0028      0.63      66     122 ..      12      68 ..       2      77 .. 0.84
   2 ?    2.3  19.5      0.69   1.5e+02      60     142 ..      75     157 ..      61     160 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0028
   Rootletin  66 sadleealakLeeErqrseklaqvnslLreqleearqaneaLtedlqkltkdwerlr 122
                   + +ea ak ee + + ++l+q+n    +++   +++n+ L+ +++kl++ ++  +
  CCE30002.1  12 RLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHK 68 
                 34569********************************************98877655 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.69
   Rootletin  60 eleeeesadleealakLeeErqrsek.laqvnslLreqleearqaneaLtedlqkltkdwerlreeleqkekewreeeeafney 142
                 + + ++++ l++ l+ LeeE + ++k l + n+ Lr+   +a +  ++ +  l++ +++we+  ee+ qk +++++e e++++ 
  CCE30002.1  75 QQHGTQNETLQRRLQLLEEEAEDADKtLREANEKLRQTDVKAGHYERKVQA-LEQERDQWEQKYEEMAQKHTTLQKELEELQNE 157
                 4456678888999999****99886538999****9977666655555443.223356699999***********999988775 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  28.4      0.12        26      13     148 ..       2     139 ..       1     154 [. 0.88

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.12
  PI3K_P85_iSH2  13 eklseklrevskqlqekskeydqlkeeynkiseeiqlkrqaleaFneaikmFeeqiklqekfskeaq..ehEieklqenleqlksrlkelhsskek 106
                    +++ ek + +  +  e + + ++l+++ +++++e   k q +   ++ ++++e +++  e+ +k+ +    E ++  +++e l++rl+ l+++ e+
     CCE30002.1   2 DRIKEKMNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKkvADEGQQHGTQNETLQRRLQLLEEEAED 97 
                    677888889999999999********************************************999964467888888999**************** PP

  PI3K_P85_iSH2 107 LeedlkqqkeeereleReinalkpellqLqkrkdkylewLkt 148
                     ++ l++  e+ r+++ +       ++ L++++d+  ++ ++
     CCE30002.1  98 ADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEE 139
                    **********************************97655444 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0  18.5       1.3   2.9e+02      17     104 ..      25     110 ..       1     111 [. 0.79
   2 ?    7.7  11.9     0.022       4.9       2      56 ..      87     157 ..      86     161 .] 0.71

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 1.3
                 HHHHHHHHCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  17 ieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaaerkqkLe 104
                 ++ k + l++e+  ++ +e+ +l++k   le e++  ++ +k+ +++a++ +++ + ++e ++ rl+ l+e  e+  +++ e  +kL+
  CCE30002.1  25 LQTKVKSLEQEN-LSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQH-GTQNETLQRRLQLLEEEAEDADKTLREANEKLR 110
                 455666664444.5999*********************************9777.69999*******999988877777777777765 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHHHHHHHHCCSSC..SSSHHHHHHHHH..............HHHHHHHHHHHHHHH CS
    Spectrin   2 llqqfaqdadeleeWieekeellssedl..gkdleevqallk..............khkaleaelaaqqer 56 
                 +lq ++++a++ ++ ++e+ e+l ++d+  g+   +vqal++              kh++l++el++ q++
  CCE30002.1  87 RLQLLEEEAEDADKTLREANEKLRQTDVkaGHYERKVQALEQerdqweqkyeemaqKHTTLQKELEELQNE 157
                 7999*******************6666657999999*****966655555555555555555555544444 PP

>> DUF5595  Domain of unknown function (DUF5595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   1.7      0.56   1.2e+02      51      73 .]      20      42 ..       3      42 .. 0.79
   2 ?    8.3   5.3     0.011       2.3      39      71 ..      30      61 ..      15      63 .. 0.78
   3 ?    2.5   0.6      0.72   1.6e+02      48      72 ..      76     100 ..      67     101 .. 0.84
   4 ?    6.9   4.6      0.03       6.7      42      73 .]     126     157 ..     118     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.56
     DUF5595 51 aqlesleeeekrLeeEierleke 73
                a++e+l+ + k Le+E  + e+e
  CCE30002.1 20 AKVEELQTKVKSLEQENLSKEQE 42
                68999999999999998777765 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.011
     DUF5595 39 eskLkelynvdeaqlesleeeekrLeeEierle 71
                +  L++ +   e+++ sl+ ++  Le E+e+le
  CCE30002.1 30 K-SLEQENLSKEQEITSLQHKNNLLEGEVEKLE 61
                2.266667789********************99 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.72
     DUF5595  48 vdeaqlesleeeekrLeeEierlek 72 
                 ++ +q e+l++  + LeeE e+  k
  CCE30002.1  76 QHGTQNETLQRRLQLLEEEAEDADK 100
                 5667889************999876 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.03
     DUF5595  42 LkelynvdeaqlesleeeekrLeeEierleke 73 
                 L++   + e++ e++ ++++ L++E+e+l+ e
  CCE30002.1 126 LEQERDQWEQKYEEMAQKHTTLQKELEELQNE 157
                 5666678899*******************976 PP

>> CSN5_C  Cop9 signalosome subunit 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.3      0.01       2.3      20      78 ..      19      79 ..       9      88 .. 0.65
   2 ?    4.5   3.2      0.29        65      14      62 ..     100     149 ..      91     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.01
      CSN5_C 20 aeKlekaessvsrsrsaagtlseea.seaeekkkkkkedsqLakvvkdstkiase.aqhGL 78
                a+K+e+ +++v++ +++  + ++e  s +++++  + e ++L+ ++kd +k+a e +qhG 
  CCE30002.1 19 AAKVEELQTKVKSLEQENLSKEQEItSLQHKNNLLEGEVEKLETAIKDHKKVADEgQQHGT 79
                566666666666555444333332202233344488999***************9445665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.29
      CSN5_C  14 kqisDLaeKlekaessvsrsrsaagtlseeaseaeekkk.kkkedsqLak 62 
                 k +++ +eKl++++ ++ + ++++++l++e ++ e+k +   +++++L+k
  CCE30002.1 100 KTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEeMAQKHTTLQK 149
                 56777788999999888888888888877766666555444445555555 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  18.0      0.38        84      25     112 ..      11     100 ..       2     116 .. 0.68
   2 ?    8.2   6.8     0.011       2.5      27      63 ..     122     158 ..     105     161 .] 0.89

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.38
       Mod_r  25 l.pevkqlkeekeellaeneslaeknlslepeleelrselqekleelkelekefeekeqeldell.qkfspdallarLqtavaeaeeeSe 112
                 l  e ++  ++ eel ++ +sl ++nls+e+e++ l+ + +    e+++le++ ++ ++  de     ++ ++l++rLq   +eae+  +
  CCE30002.1  11 LrLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQqHGTQNETLQRRLQLLEEEAEDADK 100
                 33456778889999999999999******9999999888887777899999999888888877764445555555555555444444333 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.011
       Mod_r  27 evkqlkeekeellaeneslaeknlslepeleelrsel 63 
                 +v++l++e+++ +++ e++a+k   l++eleel++e+
  CCE30002.1 122 KVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEI 158
                 69********************************998 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  25.9       0.1        23     123     237 ..      19     151 ..       1     158 [. 0.55

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.1
     DUF4407 123 lkeqlaaa............ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld.. 207
                 + +  + +             ++e++ l+ +++ l++e++++e+++++ ++ a++  +   gt+ +  +++    +  ++++++a+++l e+++kl+  
  CCE30002.1  19 AAKVEELQtkvksleqenlsKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQH--GTQNETLQRR---LQLLEEEAEDADKTLREANEKLRqt 112
                 22222211223333444666777888888888888888888888888888888754443..5554444444...4556667777777777777776664 PP

     DUF4407 208 .........atarlaalraelaeleaerakeraasqaaa 237
                          + ++l++ r++ ++  +e+a+++++ q++ 
  CCE30002.1 113 dvkaghyerKVQALEQERDQWEQKYEEMAQKHTTLQKEL 151
                 566666555444445555555555555555554444443 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.7     0.053        12      90     122 ..       1      33 [.       1      34 [. 0.80
   2 ?    2.8  20.0      0.61   1.3e+02       8     120 ..      39     160 ..      32     161 .] 0.53

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.053
     DUF5082  90 idaieeEIerLenqiseaqgvldtlqsqlnslk 122
                 +d+i+e+ + L+ +  ea  +++ lq++++sl+
  CCE30002.1   1 MDRIKEKMNSLRLEADEAAAKVEELQTKVKSLE 33 
                 578888888888888888888888888888886 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.61
     DUF5082   8 lqaqiaelrseiaaleekIerLk.....eaktklsdekeslkqkkkklekplnsse......sWkGkeennydgirsnlessyqtyvdkldeli...da 92 
                  +++i +l+++ + le  +e+L+       k +++++++ ++++  + + +l+++e      +++     + ++++++++ +  +y++k+ +l+   d+
  CCE30002.1  39 KEQEITSLQHKNNLLEGEVEKLEtaikdHKKVADEGQQHGTQNETLQRRLQLLEEEaedadkTLR-----EANEKLRQTDVKAGHYERKVQALEqerDQ 132
                 57899999999999999999999433322244444444444444444444444443322222222.....23333335544444444444433322256 PP

     DUF5082  93 ieeEIerLenqiseaqgvldtlqsqlns 120
                  e++ e+++++ +++q+ l+ lq+++++
  CCE30002.1 133 WEQKYEEMAQKHTTLQKELEELQNEIGN 160
                 6777777777777777777777777765 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   8.9      0.18        40      64     135 ..       8      79 ..       5      87 .. 0.89
   2 ?    8.6   8.4    0.0063       1.4      64     134 ..      88     158 ..      85     160 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.18
      DUF745  64 veqleqelreaeavvqeekkslqsseanakaaakaakqaqqqlealkallkaakenlenaeqvaagaqqela 135
                 +++l  e  ea a v+e +++++s e+   + ++  ++ q++ + l+  +++ ++++++ ++va++ qq   
  CCE30002.1   8 MNSLRLEADEAAAKVEELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQHGT 79 
                 56788999****************99999999999999****************************999755 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0063
      DUF745  64 veqleqelreaeavvqeekkslqsseanakaaakaakqaqqqlealkallkaakenlenaeqvaagaqqel 134
                 ++ le+e ++a++ ++e +++l+++  +a   ++ ++  +q+ ++ ++ ++++ ++ +++++  ++ q+e+
  CCE30002.1  88 LQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEQERDQWEQKYEEMAQKHTTLQKELEELQNEI 158
                 6889*************************************************999999999999999886 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.3    0.0057       1.3      45      63 ..      21      39 ..       6      42 .. 0.85
   2 ?    6.8   4.6     0.027         6      27      57 ..      24      54 ..      17      63 .. 0.59
   3 ?    2.5   0.5      0.61   1.3e+02      44      63 ..      41      60 ..      38      80 .. 0.68
   4 ?    1.0   1.6       1.7   3.8e+02      48      63 ..      83      98 ..      73     112 .. 0.62
   5 ?    7.2   3.2     0.021       4.5      29      53 ..     134     158 ..     114     161 .] 0.67

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0057
      GIT_CC 45 elrlLQskvqkLqaeNaql 63
                ++++LQ kv++L++eN + 
  CCE30002.1 21 KVEELQTKVKSLEQENLSK 39
                7899************875 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.027
      GIT_CC 27 aseakiqqLlkvNtslsdelrlLQskvqkLq 57
                    k++ L + N s ++e++ LQ k + L+
  CCE30002.1 24 ELQTKVKSLEQENLSKEQEITSLQHKNNLLE 54
                3445566666666666666666666655555 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.61
      GIT_CC 44 delrlLQskvqkLqaeNaql 63
                +e++ LQ k + L+ e ++l
  CCE30002.1 41 QEITSLQHKNNLLEGEVEKL 60
                55555555555555544444 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 1.7
      GIT_CC 48 lLQskvqkLqaeNaql 63
                 LQ+ +q L++e ++ 
  CCE30002.1 83 TLQRRLQLLEEEAEDA 98
                4666666666654443 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.021
      GIT_CC  29 eakiqqLlkvNtslsdelrlLQskv 53 
                 e k +++ +  t l++el++LQ+++
  CCE30002.1 134 EQKYEEMAQKHTTLQKELEELQNEI 158
                 5566666666667777777777665 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   2.4      0.38        84      77     104 ..      17      44 ..       3      60 .. 0.59
   2 ?    3.7   3.6      0.22        48      55     102 ..      23      70 ..      17      77 .. 0.79
   3 ?    7.8   6.9     0.011       2.5      47     120 ..      78     157 ..      77     161 .] 0.77

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.38
    Lectin_N  77 alssqggslsekvtsleaklekkqqdlk 104
                 + +++ ++l+ kv+sle +   k+q+++
  CCE30002.1  17 EAAAKVEELQTKVKSLEQENLSKEQEIT 44 
                 3344555666666666665555555543 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.22
    Lectin_N  55 reLetLketfsnfssstlaeiqalssqggslsekvtsleaklekkqqd 102
                 +eL+t  ++++    s + ei +l+ +++ l+ +v+ le+ ++ +++ 
  CCE30002.1  23 EELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKV 70 
                 577777788888888888899999999999999999999888888765 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.011
    Lectin_N  47 gsqnsqLqreLetLketfsnfss...stlaeiqalssqggslsekvtslea...klekkqqdlkadhselllhvkqlvkd 120
                 g qn  Lqr L+ L+e+ ++  +   + + ++++ + ++g+ ++kv+ le    + e+k +++ + h++l   + +l+++
  CCE30002.1  78 GTQNETLQRRLQLLEEEAEDADKtlrEANEKLRQTDVKAGHYERKVQALEQerdQWEQKYEEMAQKHTTLQKELEELQNE 157
                 89************998876654111556678888899***********9722256677778889999999999888876 PP

>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  14.3     0.042       9.2     162     254 ..      10     101 ..       3     122 .. 0.71
   2 ?    5.7  10.9     0.045       9.9     171     248 ..      77     158 ..      71     160 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.042
   Phage_GPO 162 alefeeeeeeeegeslferikallskkkksddarfadveeavelvAeevkelsekveallaleaelaalkkeveklkaeleaLkekLsktdak 254
                 +l +e++e+ ++ e+l +++k+l ++++ s++++++++++  +l+  ev++l++++++ ++ ++e ++  ++ e+l+++l+ L+e+ +  d++
  CCE30002.1  10 SLRLEADEAAAKVEELQTKVKSL-EQENLSKEQEITSLQHKNNLLEGEVEKLETAIKDHKKVADEGQQHGTQNETLQRRLQLLEEEAEDADKT 101
                 68899999999999999999986.666677777888888888888888888888888777777777777777777777777777665555442 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.045
   Phage_GPO 171 eeegeslferikallskkkksddarfadveeavelvAeevkelsekveall....aleaelaalkkeveklkaeleaLkekL 248
                 + ++++ ++r  +ll+++ ++ d++  + +e + ++  ++ +++ kv+al+    + e++ +++ +++++l++ele+L++++
  CCE30002.1  77 HGTQNETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYERKVQALEqerdQWEQKYEEMAQKHTTLQKELEELQNEI 158
                 33345666666789999*************9999999999999998885554445556666666677777777777776665 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   7.2      0.52   1.2e+02      68      99 ..      19      50 ..       5      53 .. 0.83
   2 ?    6.2   2.7     0.045       9.9       7      37 ..      43      73 ..      38      77 .. 0.57
   3 ?    6.4   6.0     0.038       8.3      59     101 ..      69     111 ..      67     116 .. 0.88
   4 ?    7.6   5.8     0.017       3.7      65      99 ..     124     158 ..     118     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2 68 eerketlekeiktlekqleklekeleelkeel 99
                  ++ e+l++++k+le++  ++e+e++ l+ ++
   CCE30002.1 19 AAKVEELQTKVKSLEQENLSKEQEITSLQHKN 50
                 46789999999999999999999999998876 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.045
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  7 fqqlqqqlqqlaqqikqletqlkelelvlee 37
                  + lq +   l+ ++++let +k++++v +e
   CCE30002.1 43 ITSLQHKNNLLEGEVEKLETAIKDHKKVADE 73
                 3455555666666666666666666666655 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.038
                  -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Prefoldin_2  59 dkeevkeeLeerketlekeiktlekqleklekeleelkeelqk 101
                  ++++  ++  ++ etl+ +++ le++ e+  k+l+e  e+l++
   CCE30002.1  69 KVADEGQQHGTQNETLQRRLQLLEEEAEDADKTLREANEKLRQ 111
                  566667899999***************************9997 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.017
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  65 eeLeerketlekeiktlekqleklekeleelkeel 99 
                  + Le++ ++ e++++++ ++ ++l+keleel++e+
   CCE30002.1 124 QALEQERDQWEQKYEEMAQKHTTLQKELEELQNEI 158
                  67888888888888888888888888888888876 PP

>> JAKMIP_CC3  JAKMIP CC3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.3    0.0024      0.53     152     190 ..      23      61 ..       5      72 .. 0.86
   2 ?    1.4  18.1       1.2   2.7e+02      77     173 ..      75     159 ..      66     161 .] 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0024
  JAKMIP_CC3 152 qeLvekikkleeeeskLkqeiqdlrdqnelLEfrilele 190
                 +eL  k+k+le+e+   +qei  l+ +n+lLE  +  le
  CCE30002.1  23 EELQTKVKSLEQENLSKEQEITSLQHKNNLLEGEVEKLE 61 
                 689*****************************7666655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 1.2
  JAKMIP_CC3  77 rqLlaeyqalqrayalLreklggeldaerelkareqleselrktkskikdLeeaLaqkGqdskwveekQalikrnqeLvekikkleeeeskLkqeiq 173
                 +q   +++ lqr + lL e+     da + l++ +   + lr+t  k    e+  +   q+    e+k       +e+++k ++l++e   L++ei 
  CCE30002.1  75 QQHGTQNETLQRRLQLLEEEA---EDADKTLREAN---EKLRQTDVKAGHYERKVQALEQERDQWEQKY------EEMAQKHTTLQKELEELQNEIG 159
                 566689*************99...7*******999...8999999999999999998888877766654......7888888888888888888885 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  19.1      0.14        31     112     222 ..      26     144 ..      16     160 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.14
        MPS2 112 keevkrl...........vvlssknsekdslstprkkilldllkkqesPeklrrsnrklkaLevrveslkdELeakdevlrekeRelleLkkrlseyke 199
                 + +vk l             l+ kn+  +++    +  + d +k  ++ +   ++  +  +L+ r++ l++E e+ d++lre + +l +   + ++y+ 
  CCE30002.1  26 QTKVKSLeqenlskeqeiTSLQHKNNLLEGEVEKLETAIKDHKKVADEGQ---QHGTQNETLQRRLQLLEEEAEDADKTLREANEKLRQTDVKAGHYER 121
                 44444443111111100022223333333333333333333444444333...34566789************************************** PP

        MPS2 200 kYellqrefslykarrveksqns 222
                 k + l++e +   ++ +e  q  
  CCE30002.1 122 KVQALEQERDQWEQKYEEMAQKH 144
                 *******9885555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3709  (0.206872); expected 358.6 (0.02)
Passed bias filter:                      879  (0.0490267); expected 358.6 (0.02)
Passed Vit filter:                       256  (0.0142785); expected 17.9 (0.001)
Passed Fwd filter:                       160  (0.00892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              81  [number of targets reported over threshold]
# CPU time: 1.56u 0.34s 00:00:01.90 Elapsed: 00:00:00.52
# Mc/sec: 933.07
//
Query:       CCE30003.1  [L=221]
Description: uncharacterized protein CPUR_03850 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-42  143.0  13.4      8e-42  143.0  13.4    2.3  2  Nop25        Nucleolar protein 12 (25kDa)
  ------ inclusion threshold ------
       0.73   10.2  17.7       0.24   11.7   2.1    2.5  2  BRF1         Brf1-like TBP-binding domain
        1.4    8.7  31.8        4.4    7.1  31.8    1.8  1  MFAP1        Microfibril-associated/Pre-mRNA processing
        2.6    7.8  11.5        1.5    8.6   4.2    2.1  2  EIIBC-GUT_N  Sorbitol phosphotransferase enzyme II N-terminus
        7.6    6.7  10.0        1.3    9.2   5.7    1.8  2  Flot         Flotillin


Domain annotation for each model (and alignments):
>> Nop25  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.0  13.4   2.2e-45     8e-42       2     136 ..      18     147 ..      17     148 .. 0.92
   2 ?   -4.8  14.7         5   1.8e+04      39      74 ..     162     197 ..     154     220 .. 0.44

  Alignments for each domain:
  == domain 1  score: 143.0 bits;  conditional E-value: 2.2e-45
       Nop25   2 kkakkkkveevtFDkdsRkeYLTGFhKRKlqRqkkAqeeakeqereerieeRkklreerkkeleeqleevketlkeseeeeeeeeeeeeeeeeeeeeee 100
                 k+++++++ee++FD+ +R+eYLTGFhKRKlqR+k+Aqeea++++ree++e+Rk++re r++e+ e++e+v++ l+es + + + + +++     +e++e
  CCE30003.1  18 KRKTASTIEEISFDDGAREEYLTGFHKRKLQRIKHAQEEAAKRAREEKLETRKQIREGRRREVAEHVESVNKILRESGAVSADVDGDDD-----SETQE 111
                 666779**********************************************************************8776666664443.....45689 PP

       Nop25 101 eeewegfedeeeeeeeddeeeyideekettVtvesl 136
                 ++ew+gf d+++ + +d+eeey+de+++ttV++es+
  CCE30003.1 112 SDEWDGFPDKPDLDMVDHEEEYVDEDRYTTVKIESV 147
                 9*********************************98 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 5
       Nop25  39 eeakeqereerieeRkklreerkkeleeqleevket 74 
                 eea+eq+r++r e+ ++  e   k+ + + ++ k++
  CCE30003.1 162 EEAEEQARQKRAEAERQKAEAEAKDKKPAWQKKKKK 197
                 666666666666544443333333322222222221 PP

>> BRF1  Brf1-like TBP-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.1   6.8e-05      0.24      28      90 ..      34     100 ..      13     104 .. 0.60
   2 ?    3.9   7.9     0.019        67      36      68 ..     168     197 ..     130     219 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.8e-05
        BRF1  28 lnkeyLee.qeekrlkeeaeeaeadkkkkkkkrkrkkkekkkgep...etaaeavkkmlekkk.lskk 90 
                 + +eyL   +++k ++ +++++ea+k+ +++k +++k+ ++  ++   ++ +e+v+k+l+++  +s  
  CCE30003.1  34 AREEYLTGfHKRKLQRIKHAQEEAAKRAREEKLETRKQIREG-RRrevAEHVESVNKILRESGaVSAD 100
                 567899952444444444444443333333333333332222.2234599999**9999998546655 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.019
        BRF1  36 qeekrlkeeaeeaeadkkkkkkkrkrkkkekkk 68 
                   +kr+++e+++ae    + k+k++  +k+kkk
  CCE30003.1 168 ARQKRAEAERQKAE---AEAKDKKPAWQKKKKK 197
                 22333333333333...2222222222222222 PP

>> MFAP1  Microfibril-associated/Pre-mRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  31.8    0.0012       4.4      17     157 ..      44     204 ..      17     207 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0012
                 XXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXX.......XXXXXX................XXXXS-SSSSHHH CS
       MFAP1  17 vpkskRetiaekeaeeeeeeeeeeeekkeeeerkkeakklvee..eirkeaeakeae.......deeeeea...............edvddtDeldpea 91 
                  +k +R + a++ea+++  ee+ e++k+ +e r++e  + ve+  +i +e+ a +a+       +     +               ++vd ++e+ +e 
  CCE30003.1  44 KRKLQRIKHAQEEAAKRAREEKLETRKQIREGRRREVAEHVESvnKILRESGAVSADvdgdddsE-----TqesdewdgfpdkpdlDMVDHEEEYVDED 137
                 46788988888888888888888888888888888888877751133344333222244443221.....12456789999999999999999999999 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHX..XXXXXXXXXXXXX CS
       MFAP1  92 eyeaWklReLkRikrdreereerekekeelerrrnlteeereaedrellkkqr..ekeekgkmkfmqk 157
                  y++ k+  ++ + rd   r  +  e++e + r++  e er++ ++e ++k+   +k++k+k+++  k
  CCE30003.1 138 RYTTVKIESVS-VSRDGLSRPDQFDEEAEEQARQKRAEAERQKAEAEAKDKKPawQKKKKKKFRYETK 204
                 99999997776.77888888888888888888888888888888887777777688999999888665 PP

>> EIIBC-GUT_N  Sorbitol phosphotransferase enzyme II N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.7     0.012        43     106     164 ..      38      90 ..      20     102 .. 0.46
   2 ?    8.6   4.2   0.00041       1.5      99     157 ..     132     198 ..     130     211 .. 0.57

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.012
  EIIBC-GUT_N 106 yvSgvkeeqieladeeeeeeeeeeeekeeaeekekkketkkkiteqeeke..kkkgliaki 164
                  y  g ++++++ +        ++++e+++++ +e+k et+k+i+e +++e  ++++ ++ki
   CCE30003.1  38 YLTGFHKRKLQRI--------KHAQEEAAKRAREEKLETRKQIREGRRREvaEHVESVNKI 90 
                  4444444444444........4444444444444444444444433332200223333333 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00041
  EIIBC-GUT_N  99 kyitediyvSgvkeeqiela..........deeeeeeeeeeeekeeaeekekkketkkkiteqeekekk 157
                  +y+ ed y   vk e++++           dee+ee+++++++++e++ k+++++++kk + q++k+kk
   CCE30003.1 132 EYVDEDRYT-TVKIESVSVSrdglsrpdqfDEEAEEQARQKRAEAERQ-KAEAEAKDKKPAWQKKKKKK 198
                  699999995.69999999998999998765333333333333333332.23333344444444444433 PP

>> Flot  Flotillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.74   2.7e+03      32      44 ..      56      68 ..      50     103 .. 0.51
   2 ?    9.2   5.7   0.00037       1.3       3      28 ..     163     188 ..     161     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.74
        Flot 32 EAenalseeqial 44
                EA++   ee+++ 
  CCE30003.1 56 EAAKRAREEKLET 68
                4444333333322 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00037
        Flot   3 eaeAeaakleAeAkrakaeaeAegir 28 
                 eae +a + +AeA+r+kaeaeA+ ++
  CCE30003.1 163 EAEEQARQKRAEAERQKAEAEAKDKK 188
                 45555666679999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2403  (0.134029); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 1621.41
//
Query:       CCE30004.1  [L=270]
Description: uncharacterized protein CPUR_03851 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-05   25.1   0.1    2.4e-05   24.2   0.1    1.4  1  ATP-synt_S1  Vacuolar ATP synthase subunit S1 (ATP6S1)


Domain annotation for each model (and alignments):
>> ATP-synt_S1  Vacuolar ATP synthase subunit S1 (ATP6S1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   1.4e-09   2.4e-05      98     130 ..     220     252 ..     216     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.4e-09
  ATP-synt_S1  98 gFfsigiwmgLvvslillliltyglhmimdlkt 130
                  +Ff++gi+mg++v l+ll+il  g+  +++l+ 
   CCE30004.1 220 QFFTPGIFMGIIVALVLLSILGAGIRGLASLEV 252
                  7*************************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2016.08
//
Query:       CCE30005.1  [L=127]
Description: uncharacterized protein CPUR_03852 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-16   58.5   0.1    9.7e-16   58.1   0.1    1.2  1  Trm112p          Trm112p-like protein
  ------ inclusion threshold ------
      0.028   14.9   0.4       0.05   14.1   0.4    1.3  1  Zn_ribbon_recom  Recombinase zinc beta ribbon domain
      0.048   13.7   0.3       0.22   11.5   0.1    2.0  2  ADK_lid          Adenylate kinase, active site lid
       0.19   11.8   1.4        0.3   11.1   0.7    1.8  2  DUF1451          Zinc-ribbon containing domain


Domain annotation for each model (and alignments):
>> Trm112p  Trm112p-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.1   2.2e-19   9.7e-16       3      68 .]       4     116 ..       2     116 .. 0.94

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 2.2e-19
                 GGCCC-B-TTTHH........C-..........................-HHHHHHHHH.TT---S-SS----S.............CHHTTEECCCCE CS
     Trm112p   3 lllniLaCpackg........pL..........................dwealvevaa.lglnelpkekpedy.............ellleldieege 53 
                 l ln+L+C   k         pL                          dw+ l +++  lg++ lp+++p+               +llle++i eg+
  CCE30005.1   4 LSLNFLTCA-AKAcksssdsyPLhpqdaelvqdeielvpqmiinvlprlDWAGLRTTSSeLGFPALPEQPPTAEeleanetmlrdlhHLLLETQISEGK 101
                 669*****9.555566*****999999999******************************************99************************* PP

                 EEETTTTEEEEEETT CS
     Trm112p  54 LvCpncgraYpIkdG 68 
                 LvC ncg+ Y Ik+G
  CCE30005.1 102 LVCGNCGHQYHIKEG 116
                 *************98 PP

>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   1.1e-05      0.05       4      18 ..     100     114 ..      99     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
  Zn_ribbon_recom   4 GllrCgeCGspmtrr 18 
                      G+l+Cg+CG+ ++ +
       CCE30005.1 100 GKLVCGNCGHQYHIK 114
                      9**********9976 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.33   1.5e+03       4      11 ..      16      23 ..      15      35 .. 0.78
   2 ?   11.5   0.1     5e-05      0.22       2      14 ..     102     114 ..     102     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.33
                -TTT--EE CS
     ADK_lid  4 CpkCGrsY 11
                C+++  sY
  CCE30005.1 16 CKSSSDSY 23
                99999999 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 5e-05
                 EE-TTT--EEETT CS
     ADK_lid   2 rvCpkCGrsYhvv 14 
                 +vC +CG  Yh++
  CCE30005.1 102 LVCGNCGHQYHIK 114
                 59*********76 PP

>> DUF1451  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.8   8.2e+03      29      41 ..      30      42 ..      27      44 .. 0.74
   2 ?   11.1   0.7   6.8e-05       0.3     110     128 ..      97     115 ..      74     117 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.8
     DUF1451 29 eeltkeelelvae 41
                 el ++e+elv +
  CCE30005.1 30 AELVQDEIELVPQ 42
                5788899988865 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.8e-05
     DUF1451 110 vglGtlvCekCgkelalkk 128
                 ++ G+lvC +Cg++ ++k+
  CCE30005.1  97 ISEGKLVCGNCGHQYHIKE 115
                 678*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 919.77
//
Query:       CCE30006.1  [L=270]
Description: probable cyclophilin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-46  156.1   0.4    1.1e-45  155.7   0.4    1.2  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.7   0.4   6.3e-50   1.1e-45       2     156 ..      39     193 ..      38     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 155.7 bits;  conditional E-value: 6.3e-50
  Pro_isomerase   2 vdietss..kGrivieLfadkaPktvenFlklvkeg....fYdgttFhRvikgfmvqgGdptgktsageqe.kkggesiraipdEitsklkh.krG 89 
                    +die ++  +Gr+v+ L+++++Pkt enF++l+ +g     Y+g++FhRvik+fm+qgGd+t+++   ++  +  g    +++dE+ +kl+h k+G
     CCE30006.1  39 FDIEQGGkpLGRVVMGLYGKTVPKTTENFRALA-TGekgfGYEGSAFHRVIKQFMIQGGDFTKGDG--TGGkSIYG---AKFADEN-FKLQHtKKG 127
                    6777766778***********************.5668899*******************999855..42224444...59*****.89999899* PP

  Pro_isomerase  90 alamartgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetde.erpkknvkivsa 156
                    +l+ma++g  p+++gsqFfIt+  +++ldg+++vFG+V+eG++++ekie++ t + ++p++ v+i++ 
     CCE30006.1 128 LLSMANAG--PDTNGSQFFITTVITSWLDGRHVVFGEVLEGYEIIEKIENTATAAgDKPVESVNIAKS 193
                    ******98..8***************************************999999*********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2167.47
//
Query:       CCE30007.1  [L=125]
Description: related to ribosomal protein S13 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-15   57.1   0.5    7.6e-11   42.5   2.1    2.1  2  Ribosomal_S13  Ribosomal protein S13/S18


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0     1e-05      0.18       2      60 ..       5      63 ..       4      66 .. 0.93
   2 !   42.5   2.1   4.3e-15   7.6e-11      83     126 ..      64     107 ..      59     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1e-05
  Ribosomal_S13  2 ilgtdidgkkkveialtaikGiGrrkakiilkkadvdedkrigelteeeiekieeiven 60
                   i g++ ++ k v+ al + + +G  ++  i++k  + + +++g l    +  ++ ++++
     CCE30007.1  5 IHGVNFNEAKLVKKALESFYALGPATSARIMAKFSIYKLAKVGSLPPRTVTSLTAELSQ 63
                   679999***************************************99999999888877 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 4.3e-15
  Ribosomal_S13  83 hvvendlrrklredieRlkkirsyrGlRHkrGlkvRGQrTkttg 126
                    +++ nd ++ ++++i+Rl++ ++yrG RH  G++vRGQrT+t +
     CCE30007.1  64 MTLGNDAKKIVQDNIRRLRDCGAYRGRRHALGMPVRGQRTRTQT 107
                    5678999**********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 999.28
//
Query:       CCE30008.1  [L=467]
Description: related to membrane dipeptidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.8e-102  341.1   0.0   6.8e-102  340.9   0.0    1.0  1  Peptidase_M19  Membrane dipeptidase (Peptidase family M19)


Domain annotation for each model (and alignments):
>> Peptidase_M19  Membrane dipeptidase (Peptidase family M19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.9   0.0  3.8e-106  6.8e-102       2     318 ..      83     440 ..      82     441 .. 0.98

  Alignments for each domain:
  == domain 1  score: 340.9 bits;  conditional E-value: 3.8e-106
                    HHCCS.EEEEEE-HHHHHHHCTTTTT........-TTTHCTSSS-HHHHHHHTEEEEEEEEE--C........CCCCCCHHHHHHHHHHHHHHHHH CS
  Peptidase_M19   2 llkkliviDghndlplklrqekkesl........llekdselqtdlerlraggvsavlfaifvpe........dasyeeavkatleqidlirrlvr 81 
                    +l+++++iDgh+dlp+ +r+  +++         +++++ ++q+dl rl++g+ +++++++f p+        da+   +v++tl+qid+++r+++
     CCE30008.1  83 ILAHTPLIDGHIDLPIFVRAFYRNHVdneewkkaFENGTMPGQVDLLRLKQGQSGGAFWSVFAPCpekgddfsDANLAPSVQYTLDQIDVMDRVMA 178
                    56899***********99998888878999999999*************************************99********************* PP

                    HGTTTEEE-SSHHHHHHHHHTT-EEEEEEEESCGGGTT-HHHHHHHHHTTEEEEES-SSS-BSSB-BCCGTT.......SSSSB-HHHHHHHHHHH CS
  Peptidase_M19  82 knpeqlklvrtaddierakkegkiavllgiegaealgddlallrafyalGvrvlgltynrnnkfAdgaleek......dedgGLsefGkelVrelN 171
                    ++p++++   t++ +++a+++gk+ + lgieg++++g+++a+lr+f++lGvr+++lt+n++n+fAd+a  e+       +++G+s++G++l++e+N
     CCE30008.1 179 AYPRDFASRITSKGAKAAFQAGKLISPLGIEGLHQIGNSVANLRRFHELGVRYATLTHNCHNNFADAAVLEQplrkaePRWNGVSPLGRKLIQEMN 274
                    *******************************************************************998888**9999***************** PP

                    HHT-EEE-TTB-HHHHHHHH......HH-SSE.EECCEEBTTTS--TTSB-HHHHHHHHHTT-EEEE-SSHHHCTTT.............S--BHH CS
  Peptidase_M19 172 rlgiliDlShlsektfldvl......elSkaPvvaSHSnaralcdhpRNltDeqlkaiaesgGvvgvtfvpaflkek.............aeatle 248
                    r+g+++Dl+h+se+t+ dvl      + SkaP+++SHS+a+++c+hpRN++ e+lk+++++++vv+v++ p f+++              a+atl+
     CCE30008.1 275 RIGMIVDLAHVSEDTMIDVLggrdgwSGSKAPIIFSHSSAYSICPHPRNVKNEVLKLVKKRNSVVMVNVNPGFISCVdvgnknglpeddlANATLD 370
                    ****************************************************************************9******************* PP

                    HHHHHHHHHHHHT-GGGEEE---TTTTSS-BBTBSSGGGHHHHHHHHHHTTS-HHHHHHHHTHHHHHHHH CS
  Peptidase_M19 249 dvvdhidyivelaGidhVGlGsDfdgggelpegledvsklpnltaeLlrrgyseadiekilggNflrvle 318
                     vv+hi +i +l+G +hVG+G+Dfdg+ e+p g++dv+ +pnl+a+Llr+g s++d +ki+ggN+lrv++
     CCE30008.1 371 RVVEHILHIGNLIGFEHVGIGTDFDGIFEVPRGFKDVTAYPNLIAALLRAGVSDHDAAKIAGGNLLRVWH 440
                    *********************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3751.19
//
Query:       CCE30009.1  [L=846]
Description: related to RGD2-GTPase activating protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-14   52.2   0.2    1.3e-13   51.1   0.0    1.7  2  RhoGAP    RhoGAP domain
    5.4e-12   45.6   0.0    1.1e-11   44.6   0.0    1.6  1  DEP       Domain found in Dishevelled, Egl-10, and Pleckstrin
    8.2e-10   38.8   0.0    2.1e-09   37.5   0.0    1.8  1  FCH       Fes/CIP4, and EFC/F-BAR homology domain


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       1.9   1.1e+04      91     122 ..     359     390 ..     352     394 .. 0.69
   2 !   51.1   0.0   2.1e-17   1.3e-13      24     147 ..     514     642 ..     485     647 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.9
                 HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH CS
      RhoGAP  91 erlealkellekLPkenrdtLryLlehLkrva 122
                 e  +++k +++kL +  +d+ ++++ hLk + 
  CCE30009.1 359 EADDKYKVAVRKLDQLRCDLEEAIFLHLKFLE 390
                 44556777778888888888888888887655 PP

  == domain 2  score: 51.1 bits;  conditional E-value: 2.1e-17
                 S-S-HHHHHHHHHHHHHTGGGCT.TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTS....SSHHHHHHHHHHHHTTS-HHHHHHHHHHHHH CS
      RhoGAP  24 vsgskarvkelreafdkgkavds.dleeedvhavaslLKrfLrelpepLltkelyeelieaaks....edeeerlealkellekLPkenrdtLryLleh 117
                 v    a++++lr++++ gk  +   +ee+dv +va+lLK+++ elp++L++ + ye +  ++ +     +e  r+  l+++l++L  +n +tL + + h
  CCE30009.1 514 VDVPLAQIHKLRAKVNDGKPLSPeVFEEFDVPTVAGLLKLYFLELPDSLVSAHVYEIIRTIYTTptadATEASRVAVLQQTLSQLRLTNIATLDACMNH 612
                 556668999**********9987899******************************999877775555666667************************* PP

                 HHHHHHTHHHH---HHHHHHHHHHHHHT-T CS
      RhoGAP 118 LkrvaenskenkMtaknLaivfaPtLlrpk 147
                 ++r+++  + ++  +  La  +aP++lrp+
  CCE30009.1 613 FTRLIDLTSADEEYVATLASSLAPCILRPR 642
                 ****************************97 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   1.9e-15   1.1e-11       2      72 .]     221     292 ..     220     292 .. 0.97

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.9e-15
                 S-SCEEECT.TEEESSE-HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTSCECSSSSHCC--SSSSS-EEE CS
         DEP   2 vklkdrrkh.lktypncftGseavdWLldnldiedreeAvalgqlLldqgliehvedkhqeFrdskqafYqf 72 
                 +k+ + ++  l ty n+  Gs++v++L++ + i++ + A+++gq+L+ +g+++ +++ ++ F +s+++fYq+
  CCE30009.1 221 IKMGETKVPiLGTYLNTSAGSDIVEYLQRSMAITTVSYAERIGQDLITNGFLRLIGNVGNSFANSSKMFYQW 292
                 7899999999*************************************************************8 PP

>> FCH  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   3.5e-13   2.1e-09       1      77 []      16      94 ..      16      94 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 3.5e-13
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----T.T.-.....HHHHHHHHHHHHHHHHHHHHHHH CS
         FCH  1 gfkvlqkrleqgialledlqeflkeRaeiEkeYakkLqkLakkylkr.r.kkkseestlvtawtvlleeteklaqshla 77
                g+ vl+ +l+qg+  + ++ ++ + Rae E+ Y+++L+ +a  ++k  + +++++++t+++a++ ++ e+++ a+sh++
  CCE30009.1 16 GLGVLFGKLQQGVIENRQILTLARLRAEAEETYGQRLSDIAPAVDKInGgFLRDDGATVRKAYDGMRIEMQDAARSHQR 94
                6789******************************************864667779**********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 6226.60
//
Query:       CCE30010.1  [L=1181]
Description: related to APL5-AP-3 complex subunit,gamma-adaptin, 107 KD [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-83  281.5   0.0    3.9e-83  279.8   0.0    1.8  1  Adaptin_N  Adaptin N terminal region
  ------ inclusion threshold ------
        7.2    6.4   8.2        2.2    8.0   0.0    2.6  2  DUF3464    Photosynthesis affected mutant 68


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.8   0.0   4.4e-87   3.9e-83       1     522 [.     127     749 ..     127     751 .. 0.92

  Alignments for each domain:
  == domain 1  score: 279.8 bits;  conditional E-value: 4.4e-87
                 XHHHCCHHHHHHCCSSS.-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHHH CS
   Adaptin_N   1 eekriqqelaeilnsnk.dddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirgl 98 
                 e+++iq+ l+e++ + + +d   k+ a+ kl+yl +lG+d+s++ f+v+++++s ++ +Kr++Yl +++++  ++++++L+tn l+kDl ++ + +  l
  CCE30010.1 127 EKEYIQKNLKECRAEVRsQDMDVKATALLKLVYLEMLGYDMSWASFHVLEVMSSPKYHQKRVGYLGAVQSFRPDTEVLMLATNLLKKDLASSTPTVIFL 225
                 6899*************99999***************************************************************************** PP

                 HHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SS..HHHHHHHHHHHHHH...HCCCCCCCHHHHH CS
   Adaptin_N  99 ALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkd..pgvvlaAvalleei...kkndrlllkllpk 192
                  + +L  +++p+la + + ++   l ++++ +rkk ++++++l  ++p++lr    ++ike l d +  p+v++a v++ +e+   +   + +l l+p 
  CCE30010.1 226 PIATLPHVITPSLALSTLADLLPRLGHSQSNIRKKTLVTLYRLALVYPEALRAA-WPKIKERLMDPNedPSVTAAIVNVVCELgwrR--AHDFLPLAPR 321
                 *****************************************************8.********999888**************9633..33346***** PP

                 HHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCG.CSSCHHHHHHHHHCC.........HCCCCST...HHHCCHHCHHHHHH. CS
   Adaptin_N 193 lvrrLcnllteldpwlqvkiiklltrlarqepeerskkellesllnllq.ssnnaVlletvnliv.........elapkne...livlavnaLvrlls. 277
                 l++ L    +  ++w+ +k+ikl+  l++ ep++   ++ll+ l+n ++ + ++++l+e++n i+         +     +   +++l+vn+L  ++  
  CCE30010.1 322 LFELLV---EGGNNWMAIKLIKLFATLTPLEPRLV--RKLLPPLTNIIAtTPAMSLLYECINGIIqggilgstdDPT---DtdeIATLCVNKLRGMVMm 412
                 ****99...99************************..88**********889*************999998544333...245699********99999 PP

                 SSCCTCHHHHHCHHHHHHHHXXTTTT.TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHH.................... CS
   Adaptin_N 278 skdenlryvaLrtllkivkkepkavq.hldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevaded.................... 355
                 s d+nlryvaL +++kiv ++p+ v  + d+++++++ ++d+ ir+ aldl+ ++v+ +N+  +v+ L+k++k+++  +                    
  CCE30010.1 413 SGDPNLRYVALMAFNKIVVTHPHLVAqQEDVILECID-SPDITIRIQALDLVQGMVSGENLVPVVSRLMKQLKSSSALSndqkragktspesssesdde 510
                 *************************99**********.*********************************9554444444577788888888888899 PP

                 .......................HHHHHHHHHHHHHHHS....CCHHHHHHHHHHHHHTT........................XXHHHHHHHHHHHHH CS
   Adaptin_N 356 .......................fksklvkaIgrlaekf....atdaewvldvllellsl........................sgesvkdeivevird 403
                                        ++ +lv+ I  +++k     + d++w++dvl +l ++                        s++ v++ i + +r+
  CCE30010.1 511 sppadnldskskmesqapplpedYRLDLVRRILFMCSKDnyanVLDFDWYIDVLTQLVRTapvprqfdsmvdissaapsrpwslSSGDVAERIGDELRN 609
                 9*************************************999999************************************99999999*********** PP

                 HHHHSTTTSTTCHHHHCCTCCGXXSHH.........HHHHHHHHHHHTTTTXTT...HHHHHHCTTTTTTTS.XHHHHHHHHHHHHHHHHCXGCC.THX CS
   Adaptin_N 404 liqkvpelheeiiekLaellekiesee.........araaaiWllGeygelvsntesasdllrslaekfvle.sekvklqiltalvKlyltspdketqe 492
                 + +kv +++  +++  +  + +++  +         a+++++W+lGey++l+++   + + l+s+++ ++ +   +v ++ l +++K ++  + +etq+
  CCE30010.1 610 VAVKVRAMRSTAVRAGYSIVAQLNADTpsshkvtsgALKSVAWILGEYANLLQD---PDSTLNSMLQLVTRAaRPEVCATSLLTIAKIFAYIAGDETQP 705
                 ************9988777777333333455567789****************9...*********99986516799999*********9999999999 PP

                 ..............HHHHHHHHHHHXXSHHHHHHHHHHHHHHCC CS
   Adaptin_N 493 ..............kliqlvlslatssdlevrdRaveylqllss 522
                               +++ + + la   +lev++Rave+ +ll++
  CCE30010.1 706 wtpgrktrislllaRILHVAEPLALHPNLEVQERAVEFVELLKL 749
                 999999999977777777777777788*************9986 PP

>> DUF3464  Photosynthesis affected mutant 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00024       2.2      13      68 ..     492     547 ..     478     572 .. 0.68
   2 ?   -2.8   6.3      0.52   4.6e+03      12      45 ..    1077    1105 ..    1032    1118 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00024
     DUF3464  13 krkkkpkkkkkskkakkeekekakeeekkdkeekeeaaiPevVskRmirRvalfsG 68 
                  +k++ k++++s+ ++  e+  a++ ++k+k e+++  +Pe+ +  ++rR+++++ 
  CCE30010.1 492 DQKRAGKTSPESSSESDDESPPADNLDSKSKMESQAPPLPEDYRLDLVRRILFMCS 547
                 23334444444444444444455555666666666666***************995 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.52
     DUF3464   12 kkrkkkpkkkkkskkakkeekekakeeekkdkee 45  
                  kk+kk+ kkk ++++a+++ +     ee k k++
  CCE30010.1 1077 KKKKKTTKKKVNDSNASAAAQ-----EEVKPKKK 1105
                  222222233322222222222.....11111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1387  (0.0773607); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 7489.56
//
Query:       CCE30011.1  [L=217]
Description: uncharacterized protein CPUR_03858 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-23   82.1   0.1    5.2e-23   81.7   0.1    1.2  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
    0.00011   22.5   0.0    0.00035   20.9   0.0    1.8  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra


Domain annotation for each model (and alignments):
>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.1   5.8e-27   5.2e-23       1     129 [.      52     203 ..      52     204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 5.8e-27
                     ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE.......E.....EEECSTTSSCEEEEEEEEEEETTT..........EEECTTCCCCCE CS
  Polyketide_cyc   1 vpapadqvyalvadvesypeflphcssvevleeaes....glsa.....dlevgfggltesftarvtldppee..........itfklvegdfks 76 
                     +p+  +qvy+l+ad++ y+ f+p+c++++v+++++     +        dl+vg++g+ e ft++v+++p+             + k      ks
      CCE30011.1  52 LPYAQEQVYKLIADIDAYSSFIPYCTRSRVTQWSPPdehgQ--TwpveaDLHVGYKGFEEVFTSQVRCVPNQLirafkgdaasAKAKGASSVLKS 144
                     58999******************************777552..145788**********************************99999999**** PP

                     EEEEEEECTECCEEE......CEEEEEEEEEEEE-SSCHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc  77 legkWtieslppnsg......gtrtkvalevdfkfaspllgalvgqvaervldellaal 129
                     ++++W+++++  +++      + +t+v+l+++++fa pl+ a+   v ++v++ l++a+
      CCE30011.1 145 IVTEWQVRPVLAHETssssisSPKTHVSLTITYEFANPLYMAVTSVVSNEVAEMLAEAF 203
                     ***********966688999*999*********************************99 PP

>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.9e-08   0.00035       5     135 ..      47     211 ..      44     213 .. 0.59

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.9e-08
                      EEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSE..STSSS........TTTEEEEECCCS........SEEEEEEEEEETTTTEEEEEE. CS
  Polyketide_cyc2   5 tvsvviaappekVwalvsdfenwprWhpevarveleg..gggpa........rgvegtvrvggr........gtvreelvevdpegrllsyri. 79 
                      t+s++ +   e+V++l++d +++++ +p  +r+++++  +            +  e  ++vg +        ++vr++     p++ + ++++ 
       CCE30011.1  47 TASRTLPYAQEQVYKLIADIDAYSSFIPYCTRSRVTQwsP---PdehgqtwpV--EADLHVG-YkgfeevftSQVRCV-----PNQLIRAFKGd 129
                      789999999************************9776432...1222343332..2223322.233343322223333.....44444444443 PP

                      ..E......SSS-TSEEEEEEEEECCET...........EEEEEEEEEEE.E--T.......T--HHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  80 ..v.....kpvpvanyvatwtvtpdggg...........trvtwtgefda.gplg.......gpfekpaaakavkgdleagL 135
                              +   +++ v++w+v p+ +            t v+ t+++++ +pl         + +++++a+a+++++ ++L
       CCE30011.1 130 aaSakakgASSVLKSIVTEWQVRPVLAHetssssisspkTHVSLTITYEFaNPLYmavtsvvSNEVAEMLAEAFQKRVVEQL 211
                      3514455666777788********6652234555555668888888888655555333332244466777777777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1534.56
//
Query:       CCE30012.1  [L=642]
Description: related to kinetoplast-associated protein KAP [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
          3    6.4  22.3        4.5    5.8  22.3    1.1  1  Hamartin  Hamartin protein


Domain annotation for each model (and alignments):
>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  22.3   0.00025       4.5     336     598 ..     197     466 ..     162     483 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00025
    Hamartin 336 gmttppsspgivpttelelsssasllsskvsstpeaagkatpe.tTPakssrkl......ppslsesavvvalpassrksspprkdeksesskpdlskq 427
                 g  t+p+    +p +  + + s+ ++++ v+ ++ a + a p+   Pak++  +        ++ + +++va +++     + r+ e++ + + +++k+
  CCE30012.1 197 GFFTTPQYA--LPGHLQQFQLSTTHPHQLVPAPAPAPAPAPPAtEAPAKTPTPApkepppDLEKIKLEAQVAAFKAV--EDKARAAEEQREREAQIRKE 291
                 555555443..332224444445555544444444444444443345554444433321122222223334444444..44444444555666677777 PP

    Hamartin 428 eevenekeleeslkskssvtlseLsd.vikelleaesedsvekeeeeaaisqelseiteekket.lvsrggldspfsrtleslaksqr.rkrlasalss 523
                 +e++ ++  ee +k ++ + ++e++   ++ +++a++++  e++ ee+  +q+ +++  ++++  l  + +++ ++ ++ +++ ++ r ++  +  l+ 
  CCE30012.1 292 AEEAFQRRAEELKKAQEEA-QKEIQRaRVEAERAARERIEAERKAEEERQKQQAEAMQRAEQNArLKFEAEIKAADAQRKKEEENRIRaEEAAQIRLEA 389
                 7776666666665443333.3333330333334566666666666666667777666666655568889999999999888888887744444444444 PP

    Hamartin 524 e.sisdaegaatkkeaksskeaesslekeks....csakqsftpieqklesskdcpadeeesensleeklltpspckkas 598
                 + + ++  +aa+ k   + +e+ ++++  ++     +  +++++ie++ e +k+++a  ++ ++++e  +   ++ +kas
  CCE30012.1 390 AiKAKAEANAAAAK---QAAEEAERIKMLQEeakrRAELDTLKRIEDEKEAAKKAAAAADAAKAEQEAYTKRIREETKAS 466
                 44222222222222...222333333333330001333333444444444333222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3259  (0.181773); expected 358.6 (0.02)
Passed bias filter:                      736  (0.0410508); expected 358.6 (0.02)
Passed Vit filter:                       255  (0.0142228); expected 17.9 (0.001)
Passed Fwd filter:                        86  (0.0047967); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.78u 0.37s 00:00:02.15 Elapsed: 00:00:00.58
# Mc/sec: 3318.74
//
Query:       CCE30013.1  [L=321]
Description: uncharacterized protein CPUR_03860 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-10   39.9   0.0    0.00024   20.7   0.0    3.6  3  TPR_11    TPR repeat
    2.9e-09   37.3   3.4    0.00018   21.9   0.0    4.7  5  TPR_19    Tetratricopeptide repeat
    4.6e-09   36.3   1.9     0.0013   19.4   0.1    5.5  6  TPR_14    Tetratricopeptide repeat
    3.4e-08   33.0   0.0     0.0006   19.7   0.0    4.7  4  TPR_2     Tetratricopeptide repeat
    8.2e-07   29.1   0.1    6.2e-05   23.1   0.0    2.8  3  TPR_9     Tetratricopeptide repeat
    2.4e-06   27.1   0.0    0.00087   19.0   0.0    3.3  3  TPR_1     Tetratricopeptide repeat
    8.1e-06   26.4   0.0      0.029   15.0   0.0    3.5  3  TPR_16    Tetratricopeptide repeat
    1.3e-05   25.4   0.3       0.11   12.8   0.1    4.1  4  TPR_12    Tetratricopeptide repeat
    0.00038   20.3   0.4       0.38   10.9   0.0    3.3  2  TPR_7     Tetratricopeptide repeat
    0.00052   20.5   0.6        3.6    8.4   0.0    4.4  4  TPR_6     Tetratricopeptide repeat
     0.0038   17.3   0.0        1.4    9.3   0.0    4.0  4  TPR_8     Tetratricopeptide repeat
     0.0038   17.3   0.0      0.012   15.7   0.0    1.8  2  AadA_C    Aminoglycoside adenyltransferase C-terminal domain
  ------ inclusion threshold ------
      0.017   15.5   0.0       0.18   12.3   0.0    2.7  2  TPR_17    Tetratricopeptide repeat
      0.031   14.6   0.2       0.81   10.1   0.0    2.9  3  TPR_20    Tetratricopeptide repeat
      0.032   13.4   0.0        0.1   11.8   0.0    1.9  1  FAT       FAT domain
      0.037   13.0   0.1      0.061   12.3   0.1    1.3  1  ChAPs     ChAPs (Chs5p-Arf1p-binding proteins)
      0.073   13.3   0.0        0.2   11.9   0.0    1.8  1  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.3e-06    0.0045       4      42 .]     136     174 ..     134     174 .. 0.93
   2 !   20.7   0.0   2.2e-07   0.00024       2      37 ..     168     203 ..     167     206 .. 0.95
   3 ?    3.8   0.0     0.043        45      10      34 ..     219     243 ..     215     246 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.3e-06
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 +++  k++eAi +++  l+++P+++ea++++++ y  qG
  CCE30013.1 136 LRSMDKLPEAISVLNSFLDICPTDPEAWSEMADMYVSQG 174
                 577789*****************************9998 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 2.2e-07
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGla 37 
                 d+y++qG y +Ai a+++ l l+P+  + +  LG++
  CCE30013.1 168 DMYVSQGLYAQAIYALEEVLVLSPNAWNMHARLGEV 203
                 99********************************87 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.043
      TPR_11  10 yeeAieaYkkAlkldPdnaeayynL 34 
                 + eA++++ + ++l+ ++ + yy+L
  CCE30013.1 219 FAEAVKRFCRSIELCDNYLRGYYGL 243
                 679********************98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       3.9   4.1e+03      44      57 ..       2      15 ..       2      35 .. 0.62
   2 !   10.3   0.0   0.00075       0.8      30      65 ..      58      94 ..      43      97 .. 0.83
   3 !   11.2   0.0   0.00038       0.4       6      66 ..     107     167 ..     104     168 .. 0.92
   4 !   21.9   0.0   1.8e-07   0.00018       3      57 ..     138     192 ..     136     207 .. 0.89
   5 ?    0.5   0.0      0.83   8.7e+02      37      50 ..     301     314 ..     299     318 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.9
      TPR_19 44 AealLdalpeedpd 57
                A+alL+++++  p 
  CCE30013.1  2 AQALLQPIGNLSPA 15
                56666666665554 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00075
      TPR_19 30 lLAeallalgqldeAealLdalpeedpdd.aryasLl 65
                +L+ ++l +g+  +A+++L+++   +    +r+ +L+
  CCE30013.1 58 NLMVLCLRTGDDSAARECLERITIRFGERhERVLALQ 94
                7999*******************99999559988887 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00038
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                 d++  l+ + ++lqe+  n  +  + A +l ++  l eA+ +L+  ++  p d++++s +A
  CCE30013.1 107 DLQKILEEYDALLQENDANIPIFKRKAALLRSMDKLPEAISVLNSFLDICPTDPEAWSEMA 167
                 78899999999**********************************9999999999988776 PP

  == domain 4  score: 21.9 bits;  conditional E-value: 1.8e-07
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                  + ++ eA++ l + l+  p ++ea+  +A+ ++++g +++A+ +L++++   p+
  CCE30013.1 138 SMDKLPEAISVLNSFLDICPTDPEAWSEMADMYVSQGLYAQAIYALEEVLVLSPN 192
                 577899*************************************999999877777 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.83
      TPR_19  37 algqldeAealLda 50 
                  +g++++Ae+lL+ 
  CCE30013.1 301 DAGEITAAENLLAS 314
                 46777777777764 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.085        90      10      32 ..      62      84 ..      50      98 .. 0.77
   2 ?   -0.3   0.1       2.6   2.7e+03      13      37 ..     104     128 ..      96     135 .. 0.74
   3 !   15.2   0.0   2.8e-05     0.029       7      43 ..     132     168 ..     127     169 .. 0.90
   4 !   19.4   0.1   1.2e-06    0.0013       1      43 [.     160     202 ..     160     203 .. 0.96
   5 ?   -0.6   0.0       3.2   3.3e+03      15      38 ..     217     240 ..     213     245 .. 0.77
   6 ?   -1.0   0.0       4.3   4.6e+03      12      26 ..     300     314 ..     287     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.085
      TPR_14 10 allalGdpdeAiallrralalaP 32
                ++l+ Gd  +A+++l+r+  ++ 
  CCE30013.1 62 LCLRTGDDSAARECLERITIRFG 84
                6799*************955544 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2.6
      TPR_14  13 alGdpdeAiallrralalaPddaea 37 
                 ++ d+++ ++ ++++l+ + ++  +
  CCE30013.1 104 NNADLQKILEEYDALLQENDANIPI 128
                 5678889999999999988776555 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 2.8e-05
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlllaq 43 
                  a++l+  +++ eAi +l+  l+ +P+d+eaw ++a+
  CCE30013.1 132 KAALLRSMDKLPEAISVLNSFLDICPTDPEAWSEMAD 168
                 5788889999**********************99996 PP

  == domain 4  score: 19.4 bits;  conditional E-value: 1.2e-06
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 pea+ ++a+ +  +G +++Ai +l+++l l P+ +  + +l++
  CCE30013.1 160 PEAWSEMADMYVSQGLYAQAIYALEEVLVLSPNAWNMHARLGE 202
                 79************************************99987 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 3.2
      TPR_14  15 GdpdeAiallrralalaPddaeaw 38 
                   ++eA++ + r ++l+ + ++ +
  CCE30013.1 217 KHFAEAVKRFCRSIELCDNYLRGY 240
                 578999999999999888776655 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 4.3
      TPR_14  12 lalGdpdeAiallrr 26 
                 + +G+  +A++ll  
  CCE30013.1 300 YDAGEITAAENLLAS 314
                 568999999999975 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.27   2.8e+02      10      26 ..      62      78 ..      61      81 .. 0.88
   2 ?    3.5   0.0     0.089        94       6      34 .]     131     159 ..     128     159 .. 0.90
   3 !   19.7   0.0   5.7e-07    0.0006       1      33 [.     160     192 ..     160     193 .. 0.97
   4 ?    1.0   0.0      0.59   6.2e+02      14      31 ..     216     233 ..     213     236 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.27
       TPR_2 10 ayyklgdyeeAleafek 26
                ++++ gd   A+e++e+
  CCE30013.1 62 LCLRTGDDSAARECLER 78
                57899**********98 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.089
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                 + + +++ ++++ eA+  ++  l ++P++
  CCE30013.1 131 RKAALLRSMDKLPEAISVLNSFLDICPTD 159
                 67899999******************986 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 5.7e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 +ea+ ++++ y  +g y++A+ a+e++l l Pn
  CCE30013.1 160 PEAWSEMADMYVSQGLYAQAIYALEEVLVLSPN 192
                 69******************************9 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.59
       TPR_2  14 lgdyeeAleafekAleld 31 
                 l++++eA++ f +++el+
  CCE30013.1 216 LKHFAEAVKRFCRSIELC 233
                 567777777666666665 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.13   1.4e+02      39      63 ..      63      87 ..      49      96 .. 0.73
   2 !   11.5   0.0   0.00024      0.25       4      65 ..     101     162 ..      99     162 .. 0.88
   3 !   23.1   0.0   5.9e-08   6.2e-05       6      62 ..     137     193 ..     131     200 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.13
       TPR_9 39 laqlGclsaAladLeaylalapdap 63
                  + G+ saA+++Le+     ++++
  CCE30013.1 63 CLRTGDDSAARECLERITIRFGERH 87
                5678999999999998765555555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00024
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65 
                 +a ++ d ++ l+ ++ ll+ +   +      + ll  ++ l +A+  L+ +l+++p +p+a
  CCE30013.1 101 TASNNADLQKILEEYDALLQENDANIPIFKRKAALLRSMDKLPEAISVLNSFLDICPTDPEA 162
                 67778888888888888888888888888889999***********************9986 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 5.9e-08
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                  + ++ ++a+ v+++ l + P dpe + + + +++ +G +++A+ +Le  l l+p+a
  CCE30013.1 137 RSMDKLPEAISVLNSFLDICPTDPEAWSEMADMYVSQGLYAQAIYALEEVLVLSPNA 193
                 55678999*******************************************999976 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.1   6.4e+03      11      26 ..      63      78 ..      61      78 .. 0.76
   2 ?    4.3   0.0     0.036        38       3      22 ..     128     147 ..     126     159 .. 0.80
   3 !   19.0   0.0   8.3e-07   0.00087       1      33 [.     160     192 ..     160     193 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.1
                HHHTT-HHHHHHHHHH CS
       TPR_1 11 yfklgkydeAleyyek 26
                +++ g+   A e+ e+
  CCE30013.1 63 CLRTGDDSAARECLER 78
                5667788899999986 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHTT-HHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAle 22 
                 ++++++++++++ k+ eA+ 
  CCE30013.1 128 IFKRKAALLRSMDKLPEAIS 147
                 5789**************96 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 8.3e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 ++a+  ++ +y ++g y +A+ + e++L l Pn
  CCE30013.1 160 PEAWSEMADMYVSQGLYAQAIYALEEVLVLSPN 192
                 68*****************************98 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0098        10      26      58 ..      45      77 ..      42      83 .. 0.88
   2 !   15.0   0.0   2.7e-05     0.029       5      66 ..     134     192 ..     131     194 .. 0.85
   3 ?   -1.9   0.0       5.3   5.6e+03       8      20 ..     300     312 ..     299     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0098
      TPR_16 26 rdpssPdaaeAllllgdaalrqgrlaeAaalyr 58
                +++++Pd++ ++ +l +++lr g+  +A++ ++
  CCE30013.1 45 SAKETPDTWTMYENLMVLCLRTGDDSAARECLE 77
                67899***********************97555 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.7e-05
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                  +++   + ++A+ +l+ +l+  p +P+   A+ + +d++  qg +a A+ ++++ l  +p+
  CCE30013.1 134 ALLRSMDKLPEAISVLNSFLDICPTDPE---AWSEMADMYVSQGLYAQAIYALEEVLVLSPN 192
                 56666778999************55555...*******************999999888887 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 5.3
      TPR_16   8 lragdyddAaaal 20 
                 ++ag+ ++A+++l
  CCE30013.1 300 YDAGEITAAENLL 312
                 7899999999887 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.052        55      41      70 ..      49      78 ..      42      83 .. 0.81
   2 ?    3.1   0.0      0.11   1.1e+02      27      75 ..     109     156 ..     106     158 .. 0.68
   3 !   10.7   0.0   0.00048       0.5       9      72 ..     132     187 ..     125     189 .. 0.78
   4 !   12.8   0.1    0.0001      0.11       5      75 ..     162     233 ..     158     235 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.052
      TPR_12 41 hpltattlrnLgrlyralgryeeAlellee 70
                 p+t t + nL  l++++g+  +A+e le+
  CCE30013.1 49 TPDTWTMYENLMVLCLRTGDDSAARECLER 78
                566777788888899999999999999998 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
      TPR_12  27 ekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +k le + +ll ++  + + +    + l+r ++++ eA++ l+  l+i+
  CCE30013.1 109 QKILEEYDALLQEND-ANIPIFKRKAALLRSMDKLPEAISVLNSFLDIC 156
                 555666655554433.556666667888899999999999999888877 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00048
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                  aa+lr + ++ eA++ l+  l+i+     p+ p+   +   ++++y  +g y++A+++lee+l
  CCE30013.1 132 KAALLRSMDKLPEAISVLNSFLDIC-----PTDPE---AWSEMADMYVSQGLYAQAIYALEEVL 187
                 5777777778888888888888888.....77655...78889999999999999999999886 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 0.0001
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 a++++a+++  +g y++A+  le++l +  +++  + ++++++ + + +     l++++eA++++ ++++++
  CCE30013.1 162 AWSEMADMYVSQGLYAQAIYALEEVLVLSpNAWNMHARLGEVSLMAATSGPEGSLKHFAEAVKRFCRSIELC 233
                 78899*********************9999999999999999999999999999999999999999999987 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.015        15       4      24 ..      58      78 ..      56     100 .. 0.86
   2 !   10.9   0.0   0.00036      0.38       1      28 [.     162     189 ..     162     193 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.015
       TPR_7  4 nLarlysrlGdyeeAielyeq 24
                nL +l+ r Gd + A e++e+
  CCE30013.1 58 NLMVLCLRTGDDSAARECLER 78
                77789***************9 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00036
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLal 28 
                 a++ +a++y+++G y++Ai  +e++L+l
  CCE30013.1 162 AWSEMADMYVSQGLYAQAIYALEEVLVL 189
                 6889***************999995544 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.062        66       8      27 ..      61      80 ..      55      84 .. 0.77
   2 ?   -0.3   0.1         2   2.2e+03       3      29 ..      96     121 ..      94     123 .. 0.69
   3 ?    1.5   0.0      0.53   5.6e+02       9      31 ..     135     157 ..     131     159 .. 0.79
   4 !    8.4   0.0    0.0034       3.6       5      32 ..     165     192 ..     161     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.062
                HHHHHHHHHHHHHHHHHHHH CS
       TPR_6  8 lsyrklgdtdkAlealerli 27
                 + +++gd ++A+e ler+ 
  CCE30013.1 61 VLCLRTGDDSAARECLERIT 80
                4445567**********986 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlike 29 
                 l+k a +  ++ d +k le ++ l++e
  CCE30013.1  96 LFKEATASNNA-DLQKILEEYDALLQE 121
                 66666666667.777777878777775 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   9 syrklgdtdkAlealerlikeYP 31 
                 ++r++++  +A+  l+++++  P
  CCE30013.1 135 LLRSMDKLPEAISVLNSFLDICP 157
                 556688999*********99777 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0034
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYPd 32 
                  +a  y ++g +++A+ ale+++   P+
  CCE30013.1 165 EMADMYVSQGLYAQAIYALEEVLVLSPN 192
                 6899999*9*************988887 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.47   4.9e+02      10      26 ..      62      78 ..      55      80 .. 0.86
   2 ?    0.0   0.0       1.3   1.3e+03       8      33 ..     133     158 ..     131     159 .. 0.83
   3 !    9.3   0.0    0.0014       1.4       2      33 ..     161     192 ..     160     192 .. 0.92
   4 ?   -0.2   0.0       1.5   1.6e+03      13      31 ..     215     233 ..     214     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.47
                HHHHTT-HHHHHHHHHH CS
       TPR_8 10 iylklgdyeeAkeyyek 26
                ++l +gd  +A e++e+
  CCE30013.1 62 LCLRTGDDSAARECLER 78
                56789**********97 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.3
                 HHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldpd 33 
                 + +++++ ++ eA+++++  l++ p+
  CCE30013.1 133 AALLRSMDKLPEAISVLNSFLDICPT 158
                 66788899999*******99999986 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0014
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ea+  +++ y ++g y +A+ ++e++l l+p+
  CCE30013.1 161 EAWSEMADMYVSQGLYAQAIYALEEVLVLSPN 192
                 79999********************9988885 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.5
                 HTT-HHHHHHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyekaleld 31 
                 +l+ + eA++ + + +el 
  CCE30013.1 215 SLKHFAEAVKRFCRSIELC 233
                 68999*****999999986 PP

>> AadA_C  Aminoglycoside adenyltransferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.2e-05     0.012      28      93 ..      17      78 ..       5      83 .. 0.84
   2 ?   -2.3   0.0       4.8     5e+03      64      64 ..     145     145 ..     114     178 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-05
      AadA_C 28 aaelakllpsvlkplnpevavkskrdalklaldlpvapenyrndmllclGliavddarkvgeallr 93
                ++ela+  p +l+  np v   s   +l  a + p +   y+n m+lcl  +++dd+    e l r
  CCE30013.1 17 TLELAQQAPEILR-KNPRVFSTSPFLSLFSAKETPDTWTMYENLMVLCL--RTGDDS-AARECLER 78
                5799********9.6********************************96..777776.44555555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.8
      AadA_C  64 a 64 
                 a
  CCE30013.1 145 A 145
                 2 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00017      0.18       5      33 ..     152     180 ..     149     181 .. 0.93
   2 ?   -1.2   0.0       3.3   3.5e+03       3      23 ..     184     204 ..     182     211 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
      TPR_17   5 aleldPnnadaynnLAelllknGdlmtAr 33 
                 +l+++P++++a+ ++A  + ++G +++A+
  CCE30013.1 152 FLDICPTDPEAWSEMADMYVSQGLYAQAI 180
                 6899*********************9997 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.3
      TPR_17   3 lkaleldPnnadaynnLAell 23 
                 +++l l Pn ++ +  L+e+ 
  CCE30013.1 184 EEVLVLSPNAWNMHARLGEVS 204
                 778888899888888888765 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1         4   4.2e+03      13      28 ..      99     114 ..      68     134 .. 0.66
   2 ?   10.1   0.0   0.00077      0.81      16      61 ..     154     199 ..     139     212 .. 0.82
   3 ?    1.1   0.0       0.5   5.2e+02      35      56 ..     273     294 ..     264     312 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4
      TPR_20  13 aalaanpddldarldl 28 
                 +a a+n +dl+  l+ 
  CCE30013.1  99 EATASNNADLQKILEE 114
                 3444444444444443 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00077
      TPR_20  16 aanpddldarldlAlallaagryeeAleqLleilkrdrkweddaar 61 
                    p+d +a  ++A+ ++++g y++A+ +L e+l    ++ + +ar
  CCE30013.1 154 DICPTDPEAWSEMADMYVSQGLYAQAIYALEEVLVLSPNAWNMHAR 199
                 5569**************************9999777666665555 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.5
      TPR_20  35 agryeeAleqLleilkrdrkwe 56 
                 ++ ++ A e+L ei++r ++ e
  CCE30013.1 273 EKLNQLATEKLSEIVRRSKAHE 294
                 56678899********998764 PP

>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.7e-05       0.1     201     336 ..      84     236 ..      77     247 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.7e-05
                 CHHHHHSSCCHHHHCCTSSCCCSS-SS---............HHHHCCCTCCCCCCCCCCCT.S...-SSCCHHHHCCHHCTCCCHSTTCCCCHHHHHC CS
         FAT 201 geqkealqkLreftsellekkeelqsgleaqkeptnleeftkllarcylkkGewqealqkldwseekieeilqsysaateidpswykawhtwalfnfev 299
                 ge++e ++ L+   +e + ++++ ++++  +     l+e+ +++  ++ +k+  ++++ k         e+ +       i+p+  +aw ++a+++  +
  CCE30013.1  84 GERHERVLALQGLFKEATASNNADLQKILEE-YDALLQENDANI-PIFKRKAALLRSMDK-------LPEAISVLNSFLDICPTDPEAWSEMADMYVSQ 173
                 6666667777666666666554333333333.455555555555.899999999999999.......5555555555566677777**********999 PP

                 CHHHHHHSSSS...........................S-TCCHHHHCCT..CCHHHHTTTSS CS
         FAT 300 vskeeeqkeeee..........................pedlqeyvvpavkgflksislssen 336
                     +     ee                          pe   ++  +avk f +si l+++ 
  CCE30013.1 174 GLYAQAIYALEEvlvlspnawnmharlgevslmaatsgPEGSLKHFAEAVKRFCRSIELCDNY 236
                 8888666444445889999******************9888888****************985 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   5.8e-05     0.061     130     293 ..      16     185 ..       6     203 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-05
                 G--SSS-HHHHHHHTHHHHTTCGGGG---TT-SS--SSSSHHHHHHHHHHHHHT-HHHHHHHHHHHHTT-GG....GHH...HHHHHHHHTT-HHHHHH CS
       ChAPs 130 tsgelekkaelFlkafeklfekgvklgadsevqvptlvnNyLvetllklvrltkrydralellekLkeeepe....vvi...llarvllladeEvdavk 221
                 ++ el ++a   l   +++f +++ l+  s  ++p + + y  e l+ l   t   ++a+e le+++ +  e    v +   l  +    ++ +++ + 
  CCE30013.1  16 ETLELAQQAPEILRKNPRVFSTSPFLSLFSAKETPDTWTMY--ENLMVLCLRTGDDSAARECLERITIRFGErherVLAlqgLFKEATASNNADLQKIL 112
                 55555555556666666666666666655555555555444..55666666666666666666666554433111122211133344455666777766 PP

                 HHHHHH.-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHT CS
       ChAPs 222 llneel.eeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikledienALltLNs 293
                   +++l +e+  +  + + +a  l s +k   A++v ++  ++ P + + W +++++Y++++ + +A+++L  
  CCE30013.1 113 EEYDALlQENDANIPIFKRKAALLRSMDKLPEAISVLNSFLDICPTDPEAWSEMADMYVSQGLYAQAIYALEE 185
                 666666477888899*****************************************************99975 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00019       0.2      29      81 ..     132     185 ..     104     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 +A  l ++ +  +A+ +l+++ ++ +++++++  +A  ++ ++ y +Ai aLe+
  CCE30013.1 132 KAALLRSMDKLPEAISVLNSFlDICPTDPEAWSEMADMYVSQGLYAQAIYALEE 185
                 388889999999****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      674  (0.0375927); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2263.08
//
Query:       CCE30014.1  [L=359]
Description: probable ABP140-actin filament-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-15   56.0   0.0    1.2e-14   54.8   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
    9.5e-15   55.1   0.0    1.8e-14   54.2   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    1.4e-11   44.5   0.0    2.2e-11   43.9   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    1.8e-11   44.5   0.0    3.6e-11   43.5   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    3.9e-07   30.0   0.0    6.5e-07   29.3   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    8.4e-07   28.6   0.0    1.2e-06   28.0   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00017   21.5   0.1     0.0036   17.2   0.1    2.2  1  Methyltransf_8   Hypothetical methyltransferase
     0.0011   18.6   0.0     0.0018   17.9   0.0    1.3  1  MTS              Methyltransferase small domain
     0.0092   17.0   0.0      0.028   15.4   0.0    1.8  2  Methyltransf_24  Methyltransferase domain
  ------ inclusion threshold ------
       0.13   12.0   0.0        0.2   11.4   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
       0.17   13.0   0.8       0.75   10.9   0.0    2.2  2  DUF3298          Protein of unknown function (DUF3298)


Domain annotation for each model (and alignments):
>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   7.6e-18   1.2e-14       1      98 [.     154     256 ..     154     257 .. 0.80

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 7.6e-18
  Methyltransf_12   1 LeiGcGtGsllrallekl..pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.....ssfDlvvasnvlhhl..kdirev 85 
                      LeiG+G G++++++l+++  p+++++++D+s+ a+    e ++ +e++++++++ ++ d++ +  +     +s+D+ ++ +v+++l  ++++ +
       CCE30014.1 154 LEIGAGAGNTAFPVLANNknPHLKIHACDFSKTAV----EVMRNHEAYDTKHMQADVWDVAGDCLPpdveeGSVDVAIMVFVFSALspREWAGA 243
                      8*****************99***************....444444444444444444444332222456678***************99***** PP

  Methyltransf_12  86 ldnirklLkpgGr 98 
                      ++n++++LkpgG 
       CCE30014.1 244 VQNVYRVLKPGGL 256
                      ************7 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   1.1e-17   1.8e-14       1      97 []     153     255 ..     153     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 1.1e-17
                      EEEET-TTSHHHHHHHCTS.T.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC..CGBS..SSTTTEEEEEEESTGGGSSHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.g.kakvtgvDiseemleaareraeeeglnvefvqgda..edlp..fedgsfDlvvssgalhhlsdedlekalke 88 
                      +L++G+G G++++ ++++  + + k++++D+s++++e +r++ + +  +++  + d+  + lp   e+gs+D+ +++++++ ls+++++ a+++
       CCE30014.1 153 ILEIGAGAGNTAFPVLANNkNpHLKIHACDFSKTAVEVMRNHEAYDTKHMQADVWDVagDCLPpdVEEGSVDVAIMVFVFSALSPREWAGAVQN 246
                      8*************998876359*****************99876555444444444323354338**************************** PP

                      HHHHEEEEE CS
  Methyltransf_25  89 iarvLkpgG 97 
                      ++rvLkpgG
       CCE30014.1 247 VYRVLKPGG 255
                      ********9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   1.3e-14   2.2e-11      18     155 ..     145     303 ..     118     306 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 1.3e-14
  Methyltransf_23  18 pklraggrvLdiGcGtG.illevl..rengf.svtgvDlspeaveiaekakkaqkdqfdeqeaae.........pqgkfdlIvlrevlehvpd. 97 
                      +++  ++ +L+iG+G G +  +vl   +n++ ++ + D s  ave  ++   +  + ++++ +++         ++g+ d++++ +v+  + + 
       CCE30014.1 145 QEDAGPKVILEIGAGAGnTAFPVLanNKNPHlKIHACDFSKTAVEVMRNHEAYDTKHMQADVWDVagdclppdvEEGSVDVAIMVFVFSALSPr 238
                      44667889*********667888854445668*************99977777777775555555666666666777**************955 PP

  Methyltransf_23  98 .ppellrqiatllkpgGylllseplasl......kedrllldwlylvpagrhisffsarslkell 155
                       ++ +++++++ lkpgG++ ++++++ +         r l+++ y++ +g+ ++ff+ ++l+ ++
       CCE30014.1 239 eWAGAVQNVYRVLKPGGLVCFRDYGRGDlaqvrfRKGRYLEENFYIRGDGTRVYFFDKDELAAIW 303
                      6***********************99886777766777777799999999***********9876 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   2.2e-14   3.6e-11       1      96 []     154     259 ..     154     259 .. 0.83

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 2.2e-14
                      EEET-TTSHHHHHHHHTT....SEEEEEES-HHHHHHHHHHCCHHT-EEEE....TTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg....arvvgvDlskemlklakekaseeglkvef....vvadaeklpfednsfDlvvssevlhhv..edpekalkei 84 
                      L++G+G+G  a ++  +      ++ ++D+sk+++++ +++   +  +++     v +d+    +e++s+D+ ++ +v+  +   +++ a++++
       CCE30014.1 154 LEIGAGAGNTAFPVLANNknphLKIHACDFSKTAVEVMRNHEAYDTKHMQAdvwdVAGDCLPPDVEEGSVDVAIMVFVFSALspREWAGAVQNV 247
                      89********999993334568****************99888887743332233566666556******************999********* PP

                      HHHEEEEEEEEE CS
  Methyltransf_11  85 aRvLkpgGllvi 96 
                      +RvLkpgGl+++
       CCE30014.1 248 YRVLKPGGLVCF 259
                      ********9876 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0     4e-10   6.5e-07       5     113 ..     151     263 ..     147     313 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4e-10
  Methyltransf_31   5 lrvlDlGCGtGeltf.elaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee..leklledekfDlilsnevl..naladpdki 93 
                      +++l++G+G+G+ +f +la + +p+ +++  D+s++a+e++r++ +    + ++  + d+    l+ ++e+ ++D+ +   v+      + + +
       CCE30014.1 151 KVILEIGAGAGNTAFpVLANNKNPHLKIHACDFSKTAVEVMRNH-EAYDTKHMQADVWDVAGdcLPPDVEEGSVDVAIMVFVFsaLSPREWAGA 243
                      679***********94566699*********************7.55666689999988875578866888*****655544443366678999 PP

  Methyltransf_31  94 leeiervlkpggilliedpr 113
                       +++ rvlkpgg ++ +d+ 
       CCE30014.1 244 VQNVYRVLKPGGLVCFRDYG 263
                      **************999876 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   7.6e-10   1.2e-06      43     151 ..     145     259 ..     117     278 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 7.6e-10
                      --S--TTEEEEES-TT-HHHHH.HHHHHHHHHEEEEEES-HHHHHHHHHH.HHHHTSSTEEEEE--TTT-T..TS-T-EEEEEEES-GGG-S-H CS
  Ubie_methyltran  43 vavkrgakvlDvagGtgDlafk.lsdsvgekgkvvvlDinenmLkvgekk.lkeegkinieflqanaeeLp..feddsfDvvtvsfGlrnvtDk 132
                      + +  ++ +l++ +G+g+ af  l+++ + + k++ +D++++ ++v +++ + ++  ++ +     +  Lp   e++s Dv  + f +  ++ +
       CCE30014.1 145 QEDAGPKVILEIGAGAGNTAFPvLANNKNPHLKIHACDFSKTAVEVMRNHeAYDTKHMQADVWDVAGDCLPpdVEEGSVDVAIMVFVFSALSPR 238
                      3344456899***********72556677888************99887615566666777766666666632788********9999999876 PP

                      H..HHHHHHHHHEEEEEEEEE CS
  Ubie_methyltran 133 l..kaLkeayrvlkpGGrlvv 151
                      +   a++++yrvlkpGG +  
       CCE30014.1 239 EwaGAVQNVYRVLKPGGLVCF 259
                      522689***********8865 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   2.2e-06    0.0036      95     155 ..     193     258 ..     103     286 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.2e-06
                     .EEEEESS-SSTTEEES-TTS-S..--TT-EEEEE..EES-.--SS-HHHHHHHHHHHEEEEEEEE CS
  Methyltransf_8  95 kvrsfdlvavnervvacdlakvP..ledesvdvav..fcls.lmgtnladflkeanrvlkvGGllk 155
                     + +++d + ++ +v       +P  +e++svdva+  f +s l   ++a  +++++rvlk+GGl+ 
      CCE30014.1 193 NHEAYDTKHMQADVWDVAGDCLPpdVEEGSVDVAImvFVFSaLSPREWAGAVQNVYRVLKPGGLVC 258
                     22334444444444222222334347899***997225555255689****************975 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-06    0.0018      22      84 ..     139     204 ..     125     229 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
                 HHHHHCHCC.TCSEEEEET-TTSHHHHHHH..HHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEE CS
         MTS  22 lLletlpke.lsgkvlDlGcGaGvlgaala..kespeaevtlvdvdarAlesakenleanklevev 84 
                 +L+e  +++   + +l +G+GaG  +  ++  +++p+++++++d ++ A+e+ ++  +    ++++
  CCE30014.1 139 VLVEVTQEDaGPKVILEIGAGAGNTAFPVLanNKNPHLKIHACDFSKTAVEVMRNHEAYDTKHMQA 204
                 5777777774334589*******9987665116789999************998654433333322 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.7e-05     0.028       1     106 []     154     262 ..     154     262 .. 0.77
   2 ?   -2.5   0.0       6.7   1.1e+04      24      35 ..     289     304 ..     276     342 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-05
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddrvrlikadseealasla.....agsiD...llfiDgghaaeavle 86 
                      +EiG+ +G++++ +l+  ++ +  +++a+d  +   +a +++r+++  d  + ++ad  +++++       +gs+D   ++f+    + ++ + 
       CCE30014.1 154 LEIGAGAGNTAFPVLANNKNPHL-KIHACDFSK---TAVEVMRNHEAYD-TKHMQADVWDVAGDCLppdveEGSVDvaiMVFVFSALSPREWAG 242
                      7********99999977666666.9********...8888999855555.4555555544444333344449999966667777777889**** PP

  Methyltransf_24  87 dleallprlapggvvlfdDi 106
                      +++++ ++l+pgg+v f D+
       CCE30014.1 243 AVQNVYRVLKPGGLVCFRDY 262
                      ****************9987 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.7
  Methyltransf_24  24 grlvavdhdpg....a 35 
                      +r++ +d+d+     +
       CCE30014.1 289 TRVYFFDKDELaaiwS 304
                      6788888877433330 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012       0.2      40     101 ..     143     207 ..     123     231 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
  Methyltransf_16  40 lganelsklsvlELGsGtGlvGlavael..lpeakviltDlee.llellkknielnknalkskvk 101
                      + +++  ++ +lE+G+G+G +   v +    p++k+   D ++ ++e++++  + + ++++ +v+
       CCE30014.1 143 VTQEDAGPKVILEIGAGAGNTAFPVLANnkNPHLKIHACDFSKtAVEVMRNHEAYDTKHMQADVW 207
                      6677888999*********988755444325*********9995667776665555556666665 PP

>> DUF3298  Protein of unknown function (DUF3298)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.4       1.7   2.7e+03      14      52 ..      83     126 ..      71     132 .. 0.57
   2 ?   10.9   0.0   0.00046      0.75      44      70 ..     274     301 ..     237     309 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHTCH-TTS-HCCCCTT........TTTSS-TTTSSE CS
     DUF3298  14 lakiikeqikkenekqqedeyaglper........rdkedilgyqnf 52 
                  +++ + q++ +++ +    +++++ r        +++ + +++ nf
  CCE30014.1  83 YKDYAESQLEMQRQSPV---SDFDKSRfngnpakwWNQFYKNNTANF 126
                 45666677766664333...223333333455666666666666666 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00046
                 SS-TTTSSEEEETTEE.EEEE-TTSSS- CS
     DUF3298  44 edilgyqnfyltddgl.viyfppYeiaP 70 
                 +  + ++nfy+  dg  v +f+++e+a+
  CCE30014.1 274 KGRYLEENFYIRGDGTrVYFFDKDELAA 301
                 5667899*********9********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2425.83
//
Query:       CCE30015.1  [L=152]
Description: uncharacterized protein CPUR_03862 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-23   84.2   0.0    1.5e-23   84.0   0.0    1.0  1  Y_phosphatase3  Tyrosine phosphatase family
    1.3e-06   28.1   0.0    1.5e-06   27.9   0.0    1.1  1  Y_phosphatase2  Tyrosine phosphatase family
    0.00052   19.0   0.0     0.0007   18.6   0.0    1.1  1  Myotub-related  Myotubularin-like phosphatase domain
     0.0012   18.4   0.0     0.0014   18.2   0.0    1.2  1  Y_phosphatase   Protein-tyrosine phosphatase
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.024   14.5   0.0    1.3  1  DSPc            Dual specificity phosphatase, catalytic domai


Domain annotation for each model (and alignments):
>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   4.2e-27   1.5e-23     109     231 ..      31     151 ..      22     152 .] 0.89

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 4.2e-27
  Y_phosphatase3 109 ayrkvfealad.ee.pvlfHCtaGKDRTGvlaalllsllGvdeedivaDYlltneyleelrerlkakleeellaealeellsvrpeyleaaldai 201
                     ++++++   a+ ++ p+l+HCt GKDRTG+++ l+l++l+ + ++i +DY ltn++le++++++ +++++      +ee  +++p +++   +++
      CCE30015.1  31 EIKEALSLYATrDSlPILVHCTQGKDRTGLIISLVLMILNTPIDAIEHDYFLTNRGLEAENAQILTEVRQI---GLTEEWATTSPVMIRGLQKHL 122
                     577888888884459*******************************************9999995555443...458999999************ PP

  Y_phosphatase3 202 eekygsvegYlreelglseeeiealrerll 231
                      +kyg++++Yl +++g+ ++ ++ lrerl+
      CCE30015.1 123 LAKYGGLNAYL-DGIGFGADLRAGLRERLM 151
                     ***********.69*************996 PP

>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   4.1e-10   1.5e-06      71     133 ..      24      86 ..       7     108 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 4.1e-10
                     G----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHHCC CS
  Y_phosphatase2  71 lveiksdllkkalklllnkenypvllhckrGkhrtglvigclRklqkWslasilnEyrrFsgs 133
                     +v i   ++k+al l  +++  p+l+hc++Gk rtgl+i  +  + + ++  i  +y + ++ 
      CCE30015.1  24 TVDISGLEIKEALSLYATRDSLPILVHCTQGKDRTGLIISLVLMILNTPIDAIEHDYFLTNRG 86 
                     577778899*******************************99999999998888888766555 PP

>> Myotub-related  Myotubularin-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.9e-07    0.0007     231     259 ..      43      71 ..      30      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.9e-07
                     S---EEEE-SSSSSHHHHHHHHHHHHH-G CS
  Myotub-related 231 ekssvLvhcsdGwDrtsqlsslaqllLdp 259
                     ++ ++Lvhc++G Drt  ++sl+ ++L+ 
      CCE30015.1  43 DSLPILVHCTQGKDRTGLIISLVLMILNT 71 
                     5679**********************985 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     4e-07    0.0014     166     194 ..      40      68 ..      23     101 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4e-07
                    HSTTSS-EEEECSSSSHHHHHHHHHHHHH CS
  Y_phosphatase 166 keaksgpvvVhCsaGvgRtgtfvaldill 194
                     + +s p++VhC +G  Rtg +++l +++
     CCE30015.1  40 ATRDSLPILVHCTQGKDRTGLIISLVLMI 68 
                    367889****************9987765 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   6.7e-06     0.024      69      96 ..      40      67 ..      31     101 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.7e-06
                HHHTT-EEEEEESSSSSHHHHHHHHHHH CS
        DSPc 69 akqkgkkvlVHCqaGisRSatliiaYlm 96
                a+++   +lVHC+ G  R++ +i   lm
  CCE30015.1 40 ATRDSLPILVHCTQGKDRTGLIISLVLM 67
                5677789**************9987777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1186.44
//
Query:       CCE30016.1  [L=820]
Description: uncharacterized protein CPUR_03863 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-46  155.1  14.0    9.7e-46  155.1  14.0    4.6  4  Eisosome1  Eisosome protein 1
  ------ inclusion threshold ------
        1.2    9.5   5.5       0.53   10.6   0.1    3.0  2  DUF1925    Domain of unknown function (DUF1925)


Domain annotation for each model (and alignments):
>> Eisosome1  Eisosome protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.2      0.19   1.7e+03      49     106 ..     216     286 ..     170     309 .. 0.55
   2 ?    1.1   2.0      0.05   4.5e+02       4      35 ..     319     362 ..     316     399 .. 0.60
   3 !  155.1  14.0   1.1e-49   9.7e-46       1     125 []     408     531 ..     408     531 .. 0.99
   4 ?   -6.1  11.3         2   1.8e+04      91     117 ..     545     571 ..     534     576 .. 0.50

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.19
   Eisosome1  49 r................adkrsene.agkvdiGggkfmdqeevdaiAarrvqPvLdeInekaekeRerdaelkle 106
                                  +++ +     g  d+G   + +++  +  A+  v+P   e++e+  + R ++ + ++ 
  CCE30016.1 216 SernaaasalngatlahRQSMQA-AkPGLADVGAVSVTTMTRNMFTANPPVKP---EVDERTYNDRIHQSAVEMA 286
                 03333333333344332222223.24777777777777777777777777777...4555555555444444444 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.05
   Eisosome1   4 llaaArrnvkaqLedidekvyad............tgkvspsln 35 
                 l +aA r+++a+L ++ +++ ++            + k ++s++
  CCE30016.1 319 LQEAAYRQAQARLAKLHDEQHQSreyqeyygkekaSTKNRHSMM 362
                 66788888888888887777776233333333333333333333 PP

  == domain 3  score: 155.1 bits;  conditional E-value: 1.1e-49
   Eisosome1   1 reallaaArrnvkaqLedidekvyadtgkvspslneewerkakaaaqaradkrseneagkvdiGggkfmdqeevdaiAarrvqPvLdeInekaekeRer 99 
                 reallaaA+rnvka+L+++dek+y++tg+ +psl ++we+ka++aaq+r+d+r+en +gkvdiGgg+fm qee+daiA++r+qPvLd+I+ kae+eRer
  CCE30016.1 408 REALLAAAQRNVKARLHGMDEKIYQETGRTNPSLITDWEAKAQKAAQTRHDSRTEN-KGKVDIGGGMFMAQEEIDAIASNRIQPVLDDIDHKAETERER 505
                 79******************************************************.****************************************** PP

   Eisosome1 100 daelkleeeekkreaeeekarerekk 125
                 ++ lklee+++++eae++k+rere+k
  CCE30016.1 506 QEILKLEEQARREEAEKQKSRERETK 531
                 ************************87 PP

  == domain 4  score: -6.1 bits;  conditional E-value: 2
   Eisosome1  91 ekaekeRerdaelkleeeekkreaeee 117
                 eka+k +e+ + + +++eek+ ++ee+
  CCE30016.1 545 EKAKKMQEKLELKHRKDEEKRLAKEEK 571
                 555555555443333333333333333 PP

>> DUF1925  Domain of unknown function (DUF1925)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.8      0.24   2.2e+03      13      38 ..     286     312 ..     279     336 .. 0.56
   2 ?   10.6   0.1   5.9e-05      0.53      11      61 ..     380     431 ..     376     438 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.24
     DUF1925  13 snemhkrmlevskklkkl.askkeaee 38 
                 + +m++r + + +k k + a++ ea++
  CCE30016.1 286 AKKMYARQQIMVEKTKGAqAAEAEASQ 312
                 456777766666665555223322222 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 5.9e-05
     DUF1925  11 eesnemhkrmlevskklkklaskkeaeealeallraqan.daYWhGlFGGiY 61 
                 ++++++h++m + s+kl+++  +k++++    l  aq n  a  hG+   iY
  CCE30016.1 380 QQTQNIHEQMSMFSSKLSQVDKEKRERDREALLAAAQRNvKARLHGMDEKIY 431
                 57899***************8888888888899999*994578899877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3206  (0.178816); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                       148  (0.00825478); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.54u 0.38s 00:00:01.92 Elapsed: 00:00:00.64
# Mc/sec: 3871.46
//
Query:       CCE30017.1  [L=279]
Description: uncharacterized protein CPUR_03864 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-43  149.0  16.5    1.5e-43  148.8  16.5    1.0  1  Frag1     Frag1/DRAM/Sfk1 family
     0.0035   16.1   1.8     0.0057   15.4   1.8    1.3  1  EMP70     Endomembrane protein 70
  ------ inclusion threshold ------
        1.4    7.7  14.3       0.27   10.0   8.4    2.1  2  EcsB      Bacterial ABC transporter protein EcsB
        9.6    6.7  12.9       0.19   12.1   1.8    2.7  2  DUF805    Protein of unknown function (DUF805)


Domain annotation for each model (and alignments):
>> Frag1  Frag1/DRAM/Sfk1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8  16.5   3.4e-47   1.5e-43       2     218 ..       9     224 ..       8     225 .. 0.96

  Alignments for each domain:
  == domain 1  score: 148.8 bits;  conditional E-value: 3.4e-47
       Frag1   2 ffllpliafilwlgmliamlvcavvqg.pvdyvfmhkeqflPyISdigatnpeslffslalnlglflvilvallrfqr....lpplatksernlnfaal 95 
                 ++llp +++++wl+ml++ml  +++   + +y +m+++ ++ yISdiga n+++lf++ ++++ + l ++++++r++r    l p+ +  e+ l+++++
  CCE30017.1   9 YWLLPAFSALVWLAMLLTMLLYWIIHThRTHYPSMSDNASIAYISDIGASNLKPLFIAGSAITVVTLDLAFFAERWLRhrgrLVPNQSGGEKALAVLSI 107
                 689*********************9987899***********************************************888888888888989****** PP

       Frag1  96 vlgligalglllvsifstaeyhsvHlvgavvffvfgflyvllqtalyykmgrhy.vwnkstisfrlkvvllilavvlailfgvffvrhkkkcgygaysl 193
                 ++ + ga gl+l+s+f+ a+++s+H+ + ++f+ +++l++++++++y ++g ++ +++  + sf++k+ +++  ++lai+f+ +++ h++       ++
  CCE30017.1 108 LCAVAGAAGLILLSVFDVAHHKSMHDGFLLLFIGGYLLSAVFTCWEYQRLGIKNrEHRILRSSFWIKLTFILTELILAIIFASTSFTHHS-------NV 199
                 ***************************************************99889999****************************988.......8* PP

       Frag1 194 sAifEWllafwfiiffltfsvDFyt 218
                 +AifEW++af+f +++l+f++D+++
  CCE30017.1 200 AAIFEWIVAFIFTFYVLSFIIDLQP 224
                 **********************986 PP

>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.8   1.3e-06    0.0057     274     383 ..     107     220 ..      96     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-06
       EMP70 274 lllmalvtlllallgflspsnrgslltvalllyvllgliaGYvsarlyktfg....gekwkkntlltalllpgllflvffllnlilwakessgalpfgt 368
                 +l+ + +   l ll+++  ++++s+   +lll++   l++  ++ + y+ +g    ++++ ++++   l++ ++ +++ +++ ++ ++++s+ a  f+ 
  CCE30017.1 107 ILCAVAGAAGLILLSVFDVAHHKSMHDGFLLLFIGGYLLSAVFTCWEYQRLGiknrEHRILRSSFWIKLTFILTELILAIIFASTSFTHHSNVAAIFEW 205
                 455566666666888888889999999999999888888888888888888522213466666888888888888888888899999999999999*** PP

       EMP70 369 lvlllllwflisvPl 383
                 +v++++ ++++s+ +
  CCE30017.1 206 IVAFIFTFYVLSFII 220
                 **9999999998766 PP

>> EcsB  Bacterial ABC transporter protein EcsB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3     0.039   1.7e+02     178     207 ..       9      38 ..       2      46 .. 0.59
   2 ?   10.0   8.4   6.1e-05      0.27      98     202 ..     101     215 ..      99     228 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.039
        EcsB 178 ylllalapllalllilllllvlllllkrkk 207
                 y ll ++++l+ l++ll +l+++++ ++ +
  CCE30017.1   9 YWLLPAFSALVWLAMLLTMLLYWIIHTHRT 38 
                 455555555555555666666666655554 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 6.1e-05
        EcsB  98 siryslllqllllllvllillPlllettglsiaelllllllllllkllnlllkweelrlqgkkkrridr.........lirlllnalllylllalapll 187
                 ++++  +l ++  +  l++l  + ++++++   ++lll+++  ll+++ +  ++++l ++++++r++           l+ l+l+++++  +++ ++ +
  CCE30017.1 101 ALAVLSILCAVAGAAGLILLSVFDVAHHKSMHDGFLLLFIGGYLLSAVFTCWEYQRLGIKNREHRILRSsfwikltfiLTELILAIIFASTSFTHHSNV 199
                 5566678889999999********************************************999988877666666666666666666666666666655 PP

        EcsB 188 allli.lllllvllll 202
                 a+++  ++  ++ +++
  CCE30017.1 200 AAIFEwIVAFIFTFYV 215
                 5555443333333333 PP

>> DUF805  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   3.7      0.38   1.7e+03      15      37 ..       9      50 ..       2     153 .. 0.64
   2 ?   12.1   1.8   4.3e-05      0.19       5      57 ..     163     217 ..     159     233 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.38
      DUF805 15 wfvlfllllvivlallaavlaa...................a 37
                +++l  + + + la+l ++l                     a
  CCE30017.1  9 YWLLPAFSALVWLAMLLTMLLYwiihthrthypsmsdnasiA 50
                444433333333334444333333444444444444444440 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.3e-05
      DUF805   5 kGRasRsefw...wfvlfllllvivlallaavlaaaavasalsvvlallllvpsla 57 
                 + R+ Rs fw    f+l+ l+l i++a ++ +  +++va+++ +++a+++++  l+
  CCE30017.1 163 EHRILRSSFWiklTFILTELILAIIFASTSFTH-HSNVAAIFEWIVAFIFTFYVLS 217
                 67999****988777777777777766655544.4556666666665555544422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2033.06
//
Query:       CCE30018.1  [L=436]
Description: probable cyclin-dependent ser/thr protein kinase KIN28 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-63  212.0   0.0    1.2e-62  211.7   0.0    1.1  1  Pkinase         Protein kinase domain
    3.2e-34  118.4   0.0    4.7e-34  117.8   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0036   16.7   0.0     0.0067   15.8   0.0    1.4  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.041   12.7   0.1      0.082   11.7   0.1    1.6  2  Pkinase_fungal  Fungal protein kinase
       0.36   11.5   7.9       0.58   10.8   7.9    1.3  1  TP2             Nuclear transition protein 2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.7   0.0   3.3e-66   1.2e-62       1     263 [.      84     371 ..      84     372 .. 0.93

  Alignments for each domain:
  == domain 1  score: 211.7 bits;  conditional E-value: 3.3e-66
                 EEEEEEEEEESSEEEEEEEETTT.TEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHH..HHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveket.gkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladlle..rkgs 94 
                 y+k +klGeG+++ V+ ++ +++ +  vA+Kkik++k+  +    +++rE+k l++l+hpni+ l++vf++ +++l lvley++ g+l+ l++  ++++
  CCE30018.1  84 YSKGKKLGEGTYAMVFLGHLRSDpSTLVAIKKIKVQKEYTEGMaPDAVRELKHLQELHHPNIISLLSVFSSkDQNLNLVLEYLPLGDLEMLIRdtDRVV 182
                 7899*************9876552789*******999877665699***********************98467889****************877788 PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyell 191
                 +  +++k ++  + +++ ++H++ ++HrD+Kp+N+Li  +ge+K++DFGla+ +   ++ +ts v+t++Y++PE+l ++++ys +vDvWs+G +++el+
  CCE30018.1 183 YGAADIKAWMGMLTRAVWFCHENFVLHRDIKPNNLLIAADGEVKLADFGLARSFADPHQnMTSNVITRWYRPPELLfGAKHYSGAVDVWSVGTVFAELI 281
                 ****************************************************99988777****************99********************* PP

                 HSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS........................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 192 tgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei........................seeakdllkkllkkdpkkRltaeellqhpy 263
                  + p ++   g++    eldq+ +i++ +g + + ++p  +++                         ++  dll k l  dpkkR+ta+++l+h++
  CCE30018.1 282 LRAPFLP---GNN----ELDQIRMICEAIGtPAEDNWPGVTKLpeftvpsqhpvhakdwyemrfgtvGPDGVDLLMKTLWLDPKKRITARDMLRHSW 371
                 *******...544....77887778877777889999999999999**************************************************9 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.0   1.3e-37   4.7e-34       3     200 ..      86     282 ..      84     313 .. 0.88

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 1.3e-37
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEES..TTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlk..eeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkkek 97 
                   gkklGeG+++ V+ g+l+   ++ ++ Va+K++k  +e+te    + ++e+k +++l+hpni++ll v + k+++l +v+ey++ GdL+  +r++++
   CCE30018.1  86 KGKKLGEGTYAMVFLGHLR---SDPSTLVAIKKIKvqKEYTEGMAPDAVRELKHLQELHHPNIISLLSVFSsKDQNLNLVLEYLPLGDLEMLIRDTDR 180
                  579****************...9999******996225666666999***********************988889********************99 PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS.-HHHHHHSE.EEHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWm.apEslkekk.ftsksDvWsfGv 193
                        d+  ++  + +++ + +++ ++Hrd+   N L++ +  vk++DfGLar+     + +++ ++++  +W+ +pE l+  k ++ + DvWs G+
   CCE30018.1 181 VVYGAADIKAWMGMLTRAVWFCHENFVLHRDIKPNNLLIAADGEVKLADFGLARSF---ADPHQNMTSNVITRWYrPPELLFGAKhYSGAVDVWSVGT 275
                  9999****************************************************...4445556667777777699*9997666************ PP

                  HHHHHHT CS
  Pkinase_Tyr 194 llwEift 200
                  +  E++ 
   CCE30018.1 276 VFAELIL 282
                  ****987 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.9e-06    0.0067     162     239 ..     204     276 ..     189     292 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.9e-06
  Kinase-like 162 akglvhgkftvdnllldekgglmlggftaLvragtkvvlseve....kgfaPpEllgsrggytrknktkmthkldaWqlGlv 239
                  ++ ++h +++++nll   +g ++l +f+  +   +  + +++     + + PpEll  ++         ++ ++d+W +G v
   CCE30018.1 204 ENFVLHRDIKPNNLLIAADGEVKLADFGLARSFADPHQ-NMTSnvitRWYRPPELLFGAKH--------YSGAVDVWSVGTV 276
                  56689**********************85554443333.333333349******9877444........7779999999976 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.3e-05     0.082     291     368 ..     174     242 ..       8     275 .. 0.75
   2 ?   -3.3   0.0      0.78   2.8e+03     170     192 ..     345     368 ..     336     369 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.3e-05
  Pkinase_fungal 291 vispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsse 368
                     +i++  + ++ a + k+ +  l  a+    +      +LHrDi  nN+li      ++ +  L+D+ la + +d++++
      CCE30018.1 174 LIRDTDRVVYGAADIKAWMGMLTRAVWFCHE----NFVLHRDIKPNNLLIA-----ADGEVKLADFGLARSFADPHQN 242
                     5666666777777777777777777654333....337*************.....7888899999999998876554 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.78
  Pkinase_fungal 170 gkeyvvKdsWrdaerk.sEaelLk 192
                     g ++ +K  W d++++ +  ++L+
      CCE30018.1 345 GVDLLMKTLWLDPKKRiTARDMLR 368
                     678999*****9999878888887 PP

>> TP2  Nuclear transition protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   7.9   0.00016      0.58      49      94 ..      16      60 ..       4      89 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
         TP2 49 srsrsssqsptshrspsghqsqspspslpprrkkktmhshksplrP 94
                  s s s++pt+ +sps    +sp+ps+ prr+++ + s  s  r 
  CCE30018.1 16 RASSSPSKNPTTGQSPSNY-DRSPKPSPQPRRQQRLTSSSISAARA 60
                357788999**99999877.9*************999888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3229.95
//
Query:       CCE30019.1  [L=968]
Description: related to Sls2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.8e-153  512.7   0.0   2.5e-153  512.2   0.0    1.1  1  Sec10          Exocyst complex component Sec10
    2.3e-05   24.2   0.0    4.4e-05   23.3   0.0    1.5  1  F-box          F-box domain
    9.5e-05   22.2   0.0    0.00024   20.9   0.0    1.6  1  F-box-like     F-box-like


Domain annotation for each model (and alignments):
>> Sec10  Exocyst complex component Sec10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  512.2   0.0  4.1e-157  2.5e-153      15     710 ..     165     957 ..     158     958 .. 0.90

  Alignments for each domain:
  == domain 1  score: 512.2 bits;  conditional E-value: 4.1e-157
       Sec10  15 isevgqtavklgeqLesadkqrqraseaaeLiefykeflssgetsklellfkkskdpekklkaAqiarkLlaiskeldelekaentrekiekyaerlEk 113
                  s+    + k+ +++++ ++q+++ ++ a L++fy +++++++ + + ++f+ ++dp   +++Aq++++L+++++++ ++e+++ ++ k+ k+++ +E+
  CCE30019.1 165 ESDSYLEVFKQVKSIRGGARQEYGRIYGA-LAPFYFDIVKAKT-HADPIVFQAFRDP---EQQAQMLANLQRFAQSD-WSEGCNDREHKLAKMTSLFES 257
                 566677899999*****************.***********98.*************...*****************.********************* PP

       Sec10 114 elLkeFdkayrked.fermkeiAkvLqefnggasvvqlfvnqhdffidkdkl....deangiesseiwekladpdeapskveeslqalfseiretvkee 207
                 ++L+eF+++y+ +d ++rm+ +A+vL+++ng    ++lf+++h++f d++      +               +  +a+ +++e+ + +f+++  + + +
  CCE30019.1 258 AVLREFEQGYEFWDvDGRMRRYAHVLHTLNGARGGIDLFIQKHPIFSDHELElnpmE-------------CLNRSSADEISLEPSRMFFERLLAKTNDQ 343
                 **************99*******************************5553323333.............33446678899999*************** PP

       Sec10 208 aeiikrVFpnpekVmqtFlqrvfaqviqqrlealLdkassisqlayLraLhslysstlkLvkdLkey.lsteei.......................dg 282
                 a +i+r+Fpn++ V++ F++r+ +++i+++ + l+d++++ s   yL+a++ + ++++ ++++L++    t++                        + 
  CCE30019.1 344 AGVIERIFPNANAVFWEFVDRIREDIITEYTTLLFDESHERSIAVYLKAVSGVLEQLMRFLQSLTPPpPPTRKAndsiaegqvqgrelaeslqqsqgK- 441
                 ******************************************************************9777777799****************999651. PP

       Sec10 283 ssa.....lsalLdqsveelFvpylegdsYlerEkksLeelyaellskFt.tlheqsasakslk......nkvkkklatsfkasls............. 356
                  s+          +++  ++F+p++  d Yl++E + +++  +e +s+++ +l+e+++s ++++       ++k ++++sfk++++             
  CCE30019.1 442 -SQglgddVTVKAKEQALKVFEPHF--DLYLQEELEFFTKRAEEVVSQWEkKLSEEDLSLETFYmanvnrSAEKSDFLSSFKKVVMmpvtalpsfpmgs 537
                 .33433123334456699*******..***********************9*****************99999********************999988 PP

       Sec10 357 .........asklaassktkqinraasstlskskkr.........aelketaats................akaaknedeleeedsllslevaesllkw 421
                          a   aas+ +++   ++                            s                akaa + ++le+++sl s+eva++l++ 
  CCE30019.1 538 pfatakpaaAAAAAASATNGSAAAGTTP-------FpssrpqtpgG--------SgraspmpakaptdelaAKAALMASKLEGIKSLCSIEVALKLVHL 621
                 8875444421112222222222222221.......12222234440........23333445556777777999************************* PP

       Sec10 422 aaeslgRaveLss.....psevpkaveallelLlsalgkeYvetaLd.aal....aaltaqeiaektevpdls.flevvrsvdliisllqvyiktill. 508
                 a+ sl Ra++L+      + e+++++++++++Ll++lg+++v+++++ a+     ++++ ++ +++++v++l+ f+e+v+++dli ++++v+++++l  
  CCE30019.1 622 AKTSLDRAAVLIPlggqvGGEAKEQCSNIFVVLLRILGQRHVKSGFEtAVRhlshYNPRDVSDHNQKGVAPLVtFIELVNVGDLISQMIDVFYEQQLAa 720
                 ***********************************************88879*********************************************** PP

       Sec10 509 pllsdspdirremvkeknsflsrlEekvnaglqktidvvvgeveylls.kqkknDFrpknddla.............................merqpT 577
                 p++ d++d++++   +k++f+++l+e+v+agl+k+idv+++eveyl s +q ++D++p+  + +                             ++++pT
  CCE30019.1 721 PKIADKNDFLDPSALAKKKFEQMLDESVAAGLNKGIDVLMDEVEYLHStTQLPTDYNPRPISSTmstmsaatlaaatagtgtgagigigagseLDIGPT 819
                 **********************************************************98888899***************************99**** PP

       Sec10 578 eaCkeivefLssvhsalkeslsgsnlesflteiGlrlhklLleHlkkftvsseGGlmltkDlneYqdavksfkipelsekFelLrelgnlfiVqpevlk 676
                  ++k+ive++ss++s+l++++++++l++f+ e+G rl++++++Hlk+++vs+ G+++l++D+n Y  +v+++k ++l ++F++Lrel+++++++  ++k
  CCE30019.1 820 STAKRIVELVSSHTSMLVGTTDKAMLDVFNGEVGQRLFTAICKHLKRQRVSTDGAIKLIADMNLYAAYVRTLKHKDLVAYFAALRELSQIYLIDQAHAK 918
                 *************************************************************************************************** PP

       Sec10 677 slvregal.....akldrelireyiqrReDykkekldne 710
                 +++  +a+     + +++e+++ey+qrR+D++++++++e
  CCE30019.1 919 EMASVIADgdrfaGVFRAEEVYEYAQRRADWYQVRKSVE 957
                 *******9999*999*******************99876 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   7.3e-09   4.4e-05       4      45 ..      29      70 ..      29      73 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 7.3e-09
                HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH CS
       F-box  4 srLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwck 45
                s LP e+ + +L +Lp  d l+++r+++++  ++ +d +w  
  CCE30019.1 29 SKLPAEIFNAVLNYLPVADQLRMARTCRTLQEMVYDDTRWVS 70
                78*********************************9999975 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.1e-08   0.00024       3      40 ..      30      66 ..      29      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.1e-08
  F-box-like  3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtpl 40
                 LP Ei   ++ yLp  d+lr a++Cr  +++++d+  
  CCE30019.1 30 KLPAEIFNAVLNYLPVADQLRMARTCRTLQEMVYDD-T 66
                7********************************998.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (968 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 6608.05
//
Query:       CCE30020.1  [L=517]
Description: probable aspartate kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-38  133.1   1.0    4.1e-38  131.3   0.0    2.1  2  AA_kinase  Amino acid kinase family
    5.3e-13   48.5   0.8    1.1e-06   28.3   0.1    3.1  3  ACT        ACT domain
      9e-12   44.6   3.9    5.3e-09   35.7   0.3    2.5  2  ACT_7      ACT domain
  ------ inclusion threshold ------
      0.031   14.6   1.3       0.25   11.7   0.2    2.6  2  DUF3813    Protein of unknown function (DUF3813)
      0.053   13.2   0.1       0.14   11.8   0.0    1.6  1  CBM_17_28  Carbohydrate binding domain (family 17/28)


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.0   1.1e-41   4.1e-38       2     241 .]      14     321 ..      13     321 .. 0.88
   2 ?   -0.3   0.2      0.18   6.4e+02      37     105 ..     377     494 ..     355     513 .. 0.54

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 1.1e-41
                 EEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--H.......HHHHHHHHH...TCCCCCHHHC....E..HHHHHHHHH........... CS
   AA_kinase   2 rvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGgg.......sftdgllal...ksglssgelaaglrstleeagevatr........... 79 
                 ++V K+GG+s++    ++ +r+a++i + +  +n++vvV++++       ++t +lla+    +++s  +++    s +ee++ + ++           
  CCE30020.1  14 WIVQKFGGTSVG----KFPDRIARDIVKPSLLKNRVVVVCSARstgkkaeGTTSRLLAIynvLKDVSFAYAN----SSQEEQNALMEQakgliseivnd 104
                 79**********....45569********9************556688889999999997775555555555....56666666666666777777777 PP

                 ................................................HHHHHHHHHHHHHHHHTTHGEEEE-GGGTCEECCCE.....HHHTTTCEEE CS
   AA_kinase  80 ................................................dalaslgerlvaallaaglpavglsaaaldateagr...degsdgnvesvd 127
                                                                 d + s+gerl+   ++a+l++ g++a+++d+ +        + d++ ++  
  CCE30020.1 105 hvsaaksfvedvelrealtskieaecqelieyimaakrfnleinsrakDRVISFGERLSCLYMTALLHSSGVDAEYVDLCDVLHhdpTAQLDATFYNAA 203
                 77778888888888888888999999999**************************************************99999999888888888888 PP

                 CCHHHHHHHT.T.-EEEEESEEEEETTTE.....EEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTTCECCEEEHHHCHHCSSS.TTTHH CS
   AA_kinase 128 aeaieellea.g.vvpvltgfigldeege.....lgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpdarllpeisvdeaeesaselatgGm 219
                 ++a+ + lea g  vpv+tgf+  +++g      +grg +D +a l A+ l+Ad+l i+++VdG+++adp+kvp+arll  i+ +ea+e    l+ +G 
  CCE30020.1 204 SAAFVRKLEAcGdRVPVVTGFF-GNVPGSlidgdIGRGYTDLCAGLCAVGLKADELQIWKEVDGIFTADPSKVPTARLLASITPSEAAE----LTFYGS 297
                 9999999999877*******99.55555556777*******************************************************....****** PP

                 HHCHHHHHHHHHCTT..-EEEEEE CS
   AA_kinase 220 kvkhpaalaaarrgg..ipvvItn 241
                 +v+h+ +++ + +++  ip++I+n
  CCE30020.1 298 EVIHHLTMDQVIHAQppIPIRIKN 321
                 *************99889999987 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.18
                 EEEEE--.HHHHHHHHHH......TCCCCCHHHC....E..HHHHHHHHH..............................................HHH CS
   AA_kinase  37 lvvVhGg.gsftdgllal......ksglssgelaaglrstleeagevatr..............................................dal 82 
                 ++ Vh++ +s+ +g  a+      k+ +s + +     st+e +  +a +                                              ++ 
  CCE30020.1 377 VINVHSNkRSISHGFFARvfsildKYAISVDLI-----STSEVHVSLAIHsgsmhadnfanakqslaecgevsvlsnmailslvgadmknmigvagRMF 470
                 555666655555555555333333333333333.....2333333333333333333334444334444444444445555555555555566666666 PP

                 HHHHH.HHHHHHHHTTHGEEEE-G CS
   AA_kinase  83 aslge.rlvaallaaglpavglsa 105
                  +lge r++++++++g +++++s+
  CCE30020.1 471 STLGEhRVNMEMISQGASEINISC 494
                 666666677777777777777764 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.97   3.5e+03      37      58 ..     176     195 ..     169     198 .. 0.74
   2 !   17.0   0.0     1e-06    0.0036      11      40 ..     389     418 ..     388     440 .. 0.80
   3 !   28.3   0.1     3e-10   1.1e-06       5      63 ..     457     509 ..     453     510 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.97
                 STTECEEEEEEEEEEHHHHHHH CS
         ACT  37 edkvagivfvvivvdeedleev 58 
                  d  a++v++++v  +++++++
  CCE30020.1 176 VD--AEYVDLCDVLHHDPTAQL 195
                 23..899999999999998876 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1e-06
                 TTHHHHHHHHHHHTTSEEEEEEEEEESTTE CS
         ACT  11 PGlLarvfgaladrgiNidsieqrssedkv 40 
                 +G +arvf++l ++ i++d i++++++ ++
  CCE30020.1 389 HGFFARVFSILDKYAISVDLISTSEVHVSL 418
                 699**********************99853 PP

  == domain 3  score: 28.3 bits;  conditional E-value: 3e-10
                 EEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHH CS
         ACT   5 vgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealk 63 
                  +++++ G+++r f++l+++ +N ++i+q+ s      ++++ +v+d++d+  +++ l+
  CCE30020.1 457 ADMKNMIGVAGRMFSTLGEHRVNMEMISQGAS------EINISCVIDAKDATRAMNVLH 509
                 689*****************************......99**********999998876 PP

>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.4   0.00019      0.66       2      45 ..     371     414 ..     370     425 .. 0.88
   2 !   35.7   0.3   1.5e-12   5.3e-09       4      64 ..     447     509 ..     444     510 .. 0.96

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00019
                 EEEEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE.-SS CS
       ACT_7   2 sedgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiS.tyr 45 
                 ++d++++++v++++  + + G+ a+++s L +  Is+  iS ++ 
  CCE30020.1 371 IKDRISVINVHSNKRSI-SHGFFARVFSILDKYAISVDLIStSEV 414
                 689**********6666.9*********************96665 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 1.5e-12
                 EEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE...-SS-EEEEEEGGGHHHHHHHHH CS
       ACT_7   4 dgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiS...tyrtdyiLVpeedlekAveaLh 64 
                 ++++ ls+vg++++  ++G++ +++s L e+ +++ +iS   +++ ++++++++d+ +A+++Lh
  CCE30020.1 447 SNMAILSLVGADMKN-MIGVAGRMFSTLGEHRVNMEMISqgaSEINISCVIDAKDATRAMNVLH 509
                 57899********99.***********************************************9 PP

>> DUF3813  Protein of unknown function (DUF3813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2     7e-05      0.25      38      55 ..      75      92 ..      49      97 .. 0.84
   2 ?    0.5   0.1      0.22   7.8e+02       8      35 ..     108     141 ..     103     142 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7e-05
     DUF3813 38 lssAYanssdaEreqLrq 55
                +s AYanss++E++ L++
  CCE30020.1 75 VSFAYANSSQEEQNALME 92
                788***********9986 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.22
     DUF3813   8 eArsaVeeakeaaaasee...eqqea...iqrAK 35 
                  A+s+Ve ++  +a +++   e qe    i +AK
  CCE30020.1 108 AAKSFVEDVELREALTSKieaECQELieyIMAAK 141
                 699***9988777665543123344355566666 PP

>> CBM_17_28  Carbohydrate binding domain (family 17/28)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     4e-05      0.14      78     169 ..     373     462 ..     349     473 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4e-05
                 XXXXXXXXXXXXX.XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXX.........XXXXXXXXXXXXXXXXXX CS
   CBM_17_28  78 ndlseenfwanvr.lsadewaekpdilgakelsldvivkepltvsiaavPqssnh.gWanperavavtpddfelqeDgtykatLtitkeDspnl 169
                 + +s  n ++n+r +s    a+ + il+   +s+d+i ++++ vs+a+   s+++ ++an+++++a       + + ++++a+L +  +D  n+
  CCE30020.1 373 DRISVINVHSNKRsISHGFFARVFSILDKYAISVDLISTSEVHVSLAIHSGSMHAdNFANAKQSLAE----CGEVSVLSNMAILSLVGADMKNM 462
                 467888899999867878889999************************9999865269999998765....34445566777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3505.39
//
Query:       CCE30021.1  [L=845]
Description: related to cephalosporin C regulator 1 (cpcR1 gene) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-27   96.4   0.0      3e-27   95.0   0.0    1.8  1  RFX_DNA_binding  RFX DNA-binding domain
  ------ inclusion threshold ------
        1.6    9.1   8.0       0.52   10.7   4.5    2.0  2  EPL1             Enhancer of polycomb-like
        1.8    8.5  32.9      0.038   14.0  25.2    1.9  2  TFIIA            Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> RFX_DNA_binding  RFX DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0     5e-31     3e-27       1      77 [.     239     314 ..     239     316 .. 0.96

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 5e-31
  RFX_DNA_binding   1 qkfalqwlnanfeeaedvsvprqevYaeYlsicsklklkplnaasFgKlirsvFpnvktrRLgtrgqskYhyvGirl 77 
                      q+fa+ w+n+ +++ +  svpr +vYa+Y+s c+++++++ln+asFgKl+r +Fp +ktrRLg+rg+skYhyv++++
       CCE30021.1 239 QVFAMLWINSVCSKGK-GSVPRGRVYANYASRCATERITVLNPASFGKLVRVLFPGLKTRRLGVRGESKYHYVNFSI 314
                      689*********9988.89*****************************************************99865 PP

>> EPL1  Enhancer of polycomb-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.5   8.6e-05      0.52      43      90 ..     111     158 ..      67     254 .. 0.66
   2 ?   -2.4   0.1      0.91   5.4e+03      55      76 ..     745     768 ..     731     801 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.6e-05
        EPL1  43 qavetgvdkkeenekhqviaaakkkesssasskeslkkeelkLpkPsf 90 
                  +++++++++++ ++hq+ + +++++++++++++++  ++  Lp+ ++
  CCE30021.1 111 YHQQQQQQQHQQHQQHQLHQHQQQHQNQHQHQHQHHLMNRHPLPTDQY 158
                 222222222222222222222222222222222244456666666533 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.91
        EPL1  55 nekh.q.viaaakkkesssasske 76 
                  + h q v ++++++ s++++s++
  CCE30021.1 745 TSIHiQpVEKESSRQTSRHSTSSD 768
                 355555555555555555555544 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  25.2   6.4e-06     0.038      89     275 ..      10     205 ..       2     253 .. 0.46
   2 ?   -2.0   0.8      0.45   2.7e+03     149     221 ..     742     773 ..     725     807 .. 0.36

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.4e-06
       TFIIA  89 slpslvipagksvqslt.a..nssaataatfslpakleppvqipagvtlqtasgqlykvnv..qasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqs 182
                 s++ ++i+a k ++s   +    saat+ t+++  +   +  + ag+ l++   +   ++   q s  + i++++ + ++ +++ ++  +s+ a  ++ 
  CCE30021.1  10 SAARAAIKARKRPHSRAsTtsIHSAATQPTMDHS-GFADSSAMYAGQWLSNDHAHGKDMSSapQMSPEDMIIQAATHMQTGNHEFAV-DASMGAAMSH- 105
                 4444555555555554422443333444444444.3333355556665555555433333355777788888777777744422222.2222222222. PP

       TFIIA 183 qqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqeesqqaqqasqe.............qvagsqvessqtdgaedaleeespvlegelsaeeeag 268
                  + +++  +qqq++   q+qq+qq+q++q+q+q q+q+++q++++  ++             +++++ +++  +d++ed ++ + p+  +++ ++++++
  CCE30021.1 106 -HHHMAYHQQQQQQ---QHQQHQQHQLHQHQQQHQNQHQHQHQHHLMNRhplptdqygaanaSFTEGDSQMLDRDENEDCDSLSGPMGTAKPTTTRSSA 200
                 .2222222222211...1122222222222222222222222222211122333333555556666777777777777777777777555555554444 PP

       TFIIA 269 aqkeels 275
                 +++  l+
  CCE30021.1 201 NNE--LE 205
                 432..22 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.45
       TFIIA 149 sgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqqlekqqqqqqqqqqqqqqq.qvqqqqqe......e 221
                 +  ++i                                                  q+++++++ q+++++ +      +
  CCE30021.1 742 PIDTSIH------------------------------------------------IQPVEKESSrQTSRHSTSsddlnlS 773
                 2222222................................................2222222221222222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3072  (0.171343); expected 358.6 (0.02)
Passed bias filter:                      975  (0.0543812); expected 358.6 (0.02)
Passed Vit filter:                       166  (0.00925874); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.45
# Mc/sec: 5608.84
//
Query:       CCE30022.1  [L=169]
Description: related to Ypt-interacting protein YIP2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-27   95.0   7.7    2.8e-27   94.4   7.7    1.3  1  TB2_DP1_HVA22  TB2/DP1, HVA22 family


Domain annotation for each model (and alignments):
>> TB2_DP1_HVA22  TB2/DP1, HVA22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   7.7   1.6e-31   2.8e-27       1      76 [.      68     142 ..      68     143 .. 0.95

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 1.6e-31
  TB2_DP1_HVA22   1 PayaslkaleskeksdetkwltYWvvfafltvvesladvllswiPfYylfKllfllwlvlpqtqgatyvYekflrp 76 
                    P y+sl+al + +k+d+t+wltYWvvf+++tv+es++  +++w+PfY++fK++fllwl lp ++ga++++++f+ p
     CCE30022.1  68 PGYYSLHALFTADKDDDTQWLTYWVVFSSFTVLESFF-NIVYWFPFYFVFKFIFLLWLSLPPFRGAEIIFRSFMVP 142
                    99**********9999*********************.5666******************************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1246.73
//
Query:       CCE30023.1  [L=653]
Description: related to Ca2+ channel [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.3e-145  483.9   3.7   6.2e-145  483.6   3.7    1.0  1  Mid1      Stretch-activated Ca2+-permeable channel component
    0.00029   21.4   5.2      0.021   15.4   1.4    2.6  2  Fz        Fz domain
  ------ inclusion threshold ------
       0.01   15.8   0.1      0.021   14.8   0.1    1.5  1  EcpB_C    EcpB C-terminal domain
       0.19   11.9   0.1       0.36   11.0   0.1    1.4  1  UPF0047   Uncharacterised protein family UPF0047


Domain annotation for each model (and alignments):
>> Mid1  Stretch-activated Ca2+-permeable channel component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  483.6   3.7  1.4e-148  6.2e-145       1     425 [.     152     621 ..     152     622 .. 0.94

  Alignments for each domain:
  == domain 1  score: 483.6 bits;  conditional E-value: 1.4e-148
        Mid1   1 tvyisanicsqpsl........kaektkeeepqLtlyvstsssn..kkpgpekeeseqt.....veefeeGyvnat.vnasedlYiavsapnstskasg 83 
                 t+yisan+c qp++        k++k+  ++pqL +++s+ ++    +p  ++++s++      +++feeG+v+++ +na++d+Yi+++apn +++++g
  CCE30023.1 152 TMYISANTCLQPKIrpkgndtdKSNKSGPKPPQLIMFLSNGTDKdvGCPRITNSTSGEVtqgftAHNFEEGAVTVSlINATTDVYIGIYAPNIEDDYEG 250
                 68**********9999999887778888999********98777568888888777776788999***********9********************** PP

        Mid1  84 swnyelavStddlvhqy....ddrsnlllvDsdsnsALlvtgnlteseadaeskkelvkkeapYelfasseedssklkglerSlcalkngaqlasskn. 177
                  +ny++a+S++d++h+y    +d ++ll++Dsds++ALl+t+nlt+   da++++e+ ++++pY+l++s ++    l+gl+rS+c+l+n+a + s+ + 
  CCE30023.1 251 VYNYQVAASSTDYFHDYqsnaEDGAELLWMDSDSTAALLMTRNLTD---DASETREVWSEDPPYQLYVSGQDWPV-LDGLRRSACGLENNAPIGSNGHg 345
                 *****************888778899*******************4...55666777788**********99999.****************9998888 PP

        Mid1 178 ...nseevklslttrglgnkvkqqfyvkgLnasttYlailvkkgskknstas..........gggkvfkavefetkaddnCqliydLdFCdevaYavPs 263
                    n+e+v++s+t rg+g+++kqqfyv gLna+t+Y+++lv + +++ + ++           g++vf+ ++f+t+a+ nC++++dL+FCde++YavP 
  CCE30023.1 346 takNNEMVRTSMTLRGPGGLPKQQFYVLGLNATTSYSGMLVLPANTTVNVKRqddasgssrkRGSIVFEGTTFQTNAAPNCKVVTDLEFCDEIQYAVPG 444
                 887888899*********************************99777655548999******************************************* PP

        Mid1 264 nsklfknktelaklYddyakslyanFskslqqiaCeaesdarYSllrtCddCaeaYknWLCaVtiPRCedfsseakylqernvgqaflng......... 353
                 n+ +f n+telak+Yd++aks+y+nF k++qqi+Cea++++rYSl+rtC+dC++aYk+WLC+V++PRCedf s ++++++rnv+qaf+ng         
  CCE30023.1 445 NDGKF-NNTELAKTYDKQAKSIYDNFLKVMQQIQCEADRTSRYSLARTCEDCKRAYKRWLCTVSLPRCEDFLSGSPFSVVRNVNQAFPNGtflptdirq 542
                 ****9.********************************************************************************************* PP

        Mid1 354 .....aaknssRnslidevikPgpYkevlPCedlCyklvrsCpaslgFsCPkkks.llelsYglrsedge.itCnylGa 425
                       ++n+sRn++id++i+PgpY+e++PCed+Cy++v+sCpa+++F+CP+++  +++++Yg+r  +++ ++Cn++G+
  CCE30023.1 543 elaklPSQNASRNAFIDQTIQPGPYNELMPCEDICYQVVQSCPAAIQFKCPQPGMyGFNMTYGVRVANSTvVSCNFPGE 621
                 *****9************************************************************99666*******8 PP

>> Fz  Fz domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.4   4.6e-06     0.021       1      64 [.     426     513 ..     426     530 .. 0.55
   2 !    6.9   0.1    0.0022       9.7      71      90 ..     569     588 ..     556     603 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.6e-06
                 -EE-.E...ETT-S.........-SEE-............GGGS.S-SSHHHH.HHHHHHHHGGGG-..HHHTTSTTHHHHHHS---EE CS
          Fz   1 Cepi.elelCkaig.........ynsts............lpnllgheteeev.aeeleefsllvkl..eCspalklflCsllfpkCep 64 
                 C+ + +le+C +i+         +n+t+            + n+l+  ++ +  a++++ +sl   +  +C++a+k +lC++ +p+Ce+
  CCE30023.1 426 CKVVtDLEFCDEIQyavpgndgkFNNTElaktydkqaksiYDNFLKVMQQIQCeADRTSRYSLAR-TceDCKRAYKRWLCTVSLPRCED 513
                 55556677888887344433333444432222222222223333333333333122244444444.359******************53 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0022
                 EE---HHHHHHHHTT-GGGS CS
          Fz  71 plppCrslCeavrdsCekvl 90 
                  l pC ++C++v +sC   +
  CCE30023.1 569 ELMPCEDICYQVVQSCPAAI 588
                 568*************9977 PP

>> EcpB_C  EcpB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   4.6e-06     0.021      16      60 ..     416     460 ..     405     472 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.6e-06
      EcpB_C  16 vsfrvvAyGpCkdkkegkgCkerYyvmPgkkvklkkvdvsdkksk 60 
                 ++f++ A+ +Ck  ++ + C e  y +Pg++ k++++++++  +k
  CCE30023.1 416 TTFQTNAAPNCKVVTDLEFCDEIQYAVPGNDGKFNNTELAKTYDK 460
                 69***********************************99887655 PP

>> UPF0047  Uncharacterised protein family UPF0047
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   8.1e-05      0.36       5      69 ..     209     272 ..     202     296 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.1e-05
                 HHHHHHHHHT.SEEEEEEEESSSSEEEEEEESSSHHHHHHHHHHHHHHSTTT..T-GGGTTS..THH CS
     UPF0047   5 eveeavkesgvkeGlvlvfsrhttasltinEnadpdvqeDleealeklvpee..eYrhnaegpdnad 69 
                 ev +  + ++++eG v+v +  +t+ ++i  +  p++++D+e + +  v  +  +Y h+++   na+
  CCE30023.1 209 EVTQGFTAHNFEEGAVTVSLINATTDVYIGIY-APNIEDDYEGVYNYQVAASstDYFHDYQS--NAE 272
                 5666667799********************99.9************9998877999999443..222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4380.64
//
Query:       CCE30024.1  [L=263]
Description: related to signal sequence receptor alpha chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-06   26.1   0.2    9.1e-06   25.1   0.2    1.6  1  TRAP_alpha  Translocon-associated protein (TRAP), alpha subun
  ------ inclusion threshold ------
      0.019   14.9   0.0      0.032   14.2   0.0    1.3  1  DUF5067     Domain of unknown function (DUF5067)


Domain annotation for each model (and alignments):
>> TRAP_alpha  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2     1e-09   9.1e-06      87     260 ..      50     249 ..      16     258 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1e-09
  TRAP_alpha  87 kaeeelpageiveflvgFtnkGsedfvvesleAsfrYpm.......DfnfyiqnFsalaynkvvkPkkqatleYsFipaeafagRPfGlvinlaYkdae 178
                   ++ l  g+    lv Ftn+ +  + v  l      p+       +++  + n +a++yn+ ++ ++  +l+Y F+        P  ++++la   a+
  CCE30024.1  50 VLGVRLVNGHATTALVEFTNHEDGPIQVAFLAGFVANPKalpegssEYQSILHNLTAVQYNHAIEAGETKSLTYPFVLDM----QPQDVKLQLAAVVAS 144
                 55666777777777888888766666665554433333222222228999**************************9864....577777788777777 PP

  TRAP_alpha 179 G..nqfqeavfnetvnivEveeg.lDgEtlFlYvflaalvvLllvilqqvles.....vkkkrva..kkkkk............vEtGta.nkndvDld 254
                 G  +++q  v+    +ivE+    lD   +FlY++l+++ +  l  +++++        k+ +++  kk+kk               G a  +++ D +
  CCE30024.1 145 GtnQVHQIVVHEGQASIVEAPTSfLDPQIIFLYLVLSGVFAGTLYFVYKTWIEalfppAKRTKTPvgKKAKKisadadatlsasDSAGAAtGSKTYDES 243
                 73145666788999*****976539*************9887776666554321111123333331033333555555554443234444345666888 PP

  TRAP_alpha 255 WlPket 260
                 W+P++ 
  CCE30024.1 244 WIPEHH 249
                 888765 PP

>> DUF5067  Domain of unknown function (DUF5067)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.5e-06     0.032      49     122 ..      65     137 ..      57     140 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.5e-06
                 EEEEE-SS-TTBCHHHHHHHEEEEEEEEE--B---S--TT...HHHCCCCSEE-TTSEEEEEEEEE-TTTTS-EEEE CS
     DUF5067  49 yeftNnsdeeispssavsvylkAyQngveLetailaddek...dkldnldkeikpgktvevviaYeLqdtdspvtve 122
                  eftN+ d +i+++ ++ +    + n ++L ++++++++      + +++  i++g+t++ ++ + L+ + ++v+++
  CCE30024.1  65 VEFTNHEDGPIQVAFLAGF----VANPKALPEGSSEYQSIlhnLTAVQYNHAIEAGETKSLTYPFVLDMQPQDVKLQ 137
                 589*********9999999....88999999999999999886567899*********************9***997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1877.10
//
Query:       CCE30025.1  [L=236]
Description: uncharacterized protein CPUR_03873 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-25   88.9   0.1    2.7e-25   88.2   0.1    1.4  1  IGR       IGR protein motif
  ------ inclusion threshold ------
      0.063   13.7   0.0       0.15   12.5   0.0    1.6  2  SAM_1     SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> IGR  IGR protein motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.1   3.1e-29   2.7e-25       2      55 .]      52     106 ..      51     106 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 3.1e-29
         IGR   2 tFLkkIGRnceehaekfeswekLfelsskqlkelGi.pvrqRRYiLrwrekyrqG 55 
                 tFL++IGR++++ha+kf swe+Lf+++s++lke+Gi p+r+RRY+L+w++kyr G
  CCE30025.1  52 TFLTLIGRGLSKHASKFSSWENLFSATSSELKEMGIePPRARRYLLQWMNKYRIG 106
                 9****************************************************76 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.7e-05      0.15       7      54 ..      49      94 ..      47     109 .. 0.84
   2 ?   -3.5   0.0       1.6   1.5e+04      27      36 ..     116     125 ..     112     126 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.7e-05
                SHHHHHHHT..TSGGGHHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHHHH CS
       SAM_1  7 dVgeWLesi..glgqYadlFrageidgdaLlllteddLeklgvtllGHrk 54
                dV  +L  i  gl+++a++F+++e     L+  t+++L+++g+  +  r+
  CCE30025.1 49 DVPTFLTLIgrGLSKHASKFSSWE----NLFSATSSELKEMGIEPPRARR 94
                788888888668899999995555....***************9877666 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.6
                 TTSSHHHHTT CS
       SAM_1  27 geidgdaLll 36 
                 +  dg+aLl+
  CCE30025.1 116 HVEDGQALLK 125
                 6679999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1740.37
//
Query:       CCE30026.1  [L=227]
Description: uncharacterized protein CPUR_03874 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0021   18.1   0.9     0.0021   18.1   0.9    1.9  2  MSA-2c      Merozoite surface antigen 2c
  ------ inclusion threshold ------
      0.054   13.6   0.8       0.16   12.1   0.1    2.1  2  HTH_28      Helix-turn-helix domain
       0.12   10.8   3.5       0.14   10.6   3.5    1.0  1  MCM_bind    Mini-chromosome maintenance replisome factor
       0.21   11.1   1.8       0.28   10.7   1.8    1.2  1  PP_M1       Phosphoprotein
        1.4    7.7   8.9          2    7.1   8.9    1.1  1  NPR3        Nitrogen Permease regulator of amino acid transpo
        2.3    8.5  11.4        3.8    7.8  11.4    1.3  1  DUF3807     Protein of unknown function (DUF3807)
        4.2    6.9  11.1        6.1    6.4  11.1    1.1  1  DDRGK       DDRGK domain


Domain annotation for each model (and alignments):
>> MSA-2c  Merozoite surface antigen 2c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.9         1   2.7e+03     164     186 ..       8      29 ..       2      45 .. 0.67
   2 !   18.1   0.9     8e-07    0.0021     132     203 ..      99     190 ..      64     199 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1
      MSA-2c 164 aPsdaesaaaqPPeskpaqaPaP 186
                 + s+++ +++ PP ++ + +P+P
  CCE30026.1   8 SSSSSNGTGTGPP-QHQSLSPKP 29 
                 4455656777788.555556666 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 8e-07
      MSA-2c 132 a...............tdiaalkdvteeLlkelqekkPsrtssae.tPaPsdaesaaaqPPeskpaq..aPaPts..psqseesssnlqGqs 203
                 +               t+ +a+  + e L k  ++k+  +  ++e t aP  a  a+++  e++p    aPaP+    +  e+  +n+q ++
  CCE30026.1  99 TrtintwwkarasfgiTEDGAPVCIEELLRKSSTKKTTKKKRQTEgTTAPKRARRASQKQAEKTPQTegAPAPEQaqTAAQEQDKGNIQARN 190
                 133333344444777799999999999999999999999999999999*****877776654433321245554301445577788888765 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.8   4.7e+03       1      13 [.      54      66 ..      54      68 .. 0.84
   2 ?   12.1   0.1   6.1e-05      0.16      15      41 ..      88     114 ..      80     118 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.8
      HTH_28  1 qRleiikllaaGh 13
                ++le+++ l++++
  CCE30026.1 54 RKLEVLLFLLHHR 66
                699***9999875 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 6.1e-05
      HTH_28  15 vreaArelgisrrtvyrWikryeegGi 41 
                 +rea++++ i  rt+  W k+  ++Gi
  CCE30026.1  88 IREASAWFKIPTRTINTWWKARASFGI 114
                 69*******************999998 PP

>> MCM_bind  Mini-chromosome maintenance replisome factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.5   5.5e-05      0.14      76     180 ..      76     190 ..      61     216 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.5e-05
    MCM_bind  76 eeevdleseenstlerqtlycvpiPgeneWvkesee.................keksqekvesststlssrkKRsleeeeedeemdvsksekkeeisse 157
                 ++ +d+ s++  + e   ++ +p    n+W k   +                 k         s+++  ++kKR+ e   ++ ++ + ++++k+ +++ 
  CCE30026.1  76 NHYFDDGSRRPYIREASAWFKIPTRTINTWWKARASfgitedgapvcieellrK---------SSTKKTTKKKRQTE--GTTAPKRARRASQKQAEKTP 163
                 556666777777888889999999999***999999999888875444444430.........33334444444442..22222222222222222222 PP

    MCM_bind 158 st....kekeeeskssetekkskksas 180
                 +t      +++++ ++e++k + ++++
  CCE30026.1 164 QTegapAPEQAQTAAQEQDKGNIQARN 190
                 221112111111111111111111111 PP

>> PP_M1  Phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.8   0.00011      0.28     142     199 ..     128     188 ..      93     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
                 XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXHHHHHHHHH CS
       PP_M1 142 edkstk.tteekvkkeassapskkeeqsskiklasqessgppald..wsatndeddasvea 199
                  + stk tt++k + e ++ap++ ++ s+k  +++ +++g+pa +  ++a++++d+ +++a
  CCE30026.1 128 RKSSTKkTTKKKRQTEGTTAPKRARRASQKQAEKTPQTEGAPAPEqaQTAAQEQDKGNIQA 188
                 4455651555555566668888888888888888888888888773355667777777776 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   8.9   0.00077         2      33     130 ..     118     211 ..     117     216 .. 0.44

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00077
        NPR3  33 GlPvhvdedgkwrkskkkk.kkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeeeeeededdeesekeeeekedkkknlt 130
                 G Pv+++e    rks++kk +k+kr++++++  k+ ++ s+   ++ +++ ++e    +e+++++++e+++ + +++++++  se++ +++e  ++ l+
  CCE30026.1 118 GAPVCIEEL--LRKSSTKKtTKKKRQTEGTTAPKRARRASQ---KQAEKTPQTEGAPAPEQAQTAAQEQDKGNIQARNKENLPSEATVTQQETGRNALN 211
                 678888765..566655442444444444444444333333...3333333333333334444444444444444444444444444455555555555 PP

>> DUF3807  Protein of unknown function (DUF3807)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  11.4    0.0015       3.8      65     158 ..     123     212 ..     122     225 .. 0.45

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0015
     DUF3807  65 ieallRereleeeesekekkeeeeeeedkeaadkessqeseeqekkkkskkkskkkkkrakkakekkekkeekkidlrkrtwdkvdkglasldy 158
                 ie+llR+ + ++ +++k+++e +++   k+a+ ++++q++++++++ + + ++ +   +++++ + + +++e+ +   ++t ++ ++g + l++
  CCE30026.1 123 IEELLRKSSTKKTTKKKRQTEGTTA--PKRARRASQKQAEKTPQTEGAPAPEQAQTAAQEQDKGNIQARNKENLP--SEATVTQQETGRNALNE 212
                 8999**9998888855433333333..333333233444444444444333333333333333333222222222..23333334455544443 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  11.1    0.0024       6.1       8      76 ..     127     195 ..     123     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0024
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       DDRGK   8 kkkleeKekkrqqreaeeeereerkkleekreeerkekeekeeekekkkeeeerkkeeekerkeqeeye 76 
                  +k   K+ ++++r++e     +r ++ +++++e++ + e   + e+++++++++ + + +++++e++ 
  CCE30026.1 127 LRKSSTKKTTKKKRQTEGTTAPKRARRASQKQAEKTPQTEGAPAPEQAQTAAQEQDKGNIQARNKENLP 195
                 579999*******************************************99999999999999998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1504  (0.0838864); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 1707.59
//
Query:       CCE30027.1  [L=165]
Description: uncharacterized protein CPUR_03875 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.022   14.5   0.0      0.034   13.9   0.0    1.3  1  Pilus_CpaD  Pilus biogenesis CpaD protein (pilus_cpaD)
       0.22    9.4   0.7       0.23    9.3   0.7    1.0  1  V_ATPase_I  V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> Pilus_CpaD  Pilus biogenesis CpaD protein (pilus_cpaD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.8e-06     0.034      35     101 ..      18      86 ..       4      98 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.8e-06
  Pilus_CpaD  35 veeaeasldlkvasgdggLtaaqrarlealaeeyrregagaivisv..psgssneaaaaaaaaeiravl 101
                 v ++++sl + + ++  ++++++r++l+++a+  +++g++++ ++    + + +e++a+++aa+ +++ 
  CCE30027.1  18 VLSEDRSLPIDALETMPKFSKQERRNLRNFAKLTKEKGRKRVKLEKllSQAKVKEMKAKRFAADAKELY 86 
                 556789999999999*****************************995455556669*******999876 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.7   2.6e-05      0.23      25     146 ..      11     136 ..       2     162 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 2.6e-05
  V_ATPase_I  25 fvkevrrcdemerkl..rfleeeieklekavikeeea...eesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakeflee 118
                 fvk+++ +   +r+l  + le+   k++k+++++ ++    ++++ +++ +l++l ++ + +e + k++ + +++l +++++++e+k ++   ke +++
  CCE30027.1  11 FVKKIKYVLSEDRSLpiDALETMP-KFSKQERRNLRNfakLTKEKGRKRVKLEKLLSQAKVKEMKAKRFAADAKELYDRYERMKEAKRLYDGWKEEIAR 108
                 555555554444443113344332.222222222222333667777788889999999999*******************************9999988 PP

  V_ATPase_I 119 eeeeeeeeeseeeeeekeeeeeeeseee 146
                 e++ + e+ ++ +++ +  +++++++++
  CCE30027.1 109 EAAAKGEAAAKGDATIEGGSKATPETSS 136
                 7444444444333333222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1641  (0.0915277); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1314.12
//
Query:       CCE30028.1  [L=236]
Description: related to wound-responsive protein KED [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-09   38.5   1.6    1.6e-09   38.5   1.6    3.3  2  SMAP           Small acidic protein family
     0.0072   16.3  40.0      0.013   15.5  40.0    1.4  1  SPX            SPX domain
  ------ inclusion threshold ------
       0.36   10.1  58.7       0.55    9.5  58.7    1.3  1  BUD22          BUD22
        0.4    9.7  26.1       0.45    9.6  26.1    1.2  1  LAP1C          Lamina-associated polypeptide 1C (LAP1C)
       0.99    8.0  22.1        1.4    7.6  22.1    1.3  1  Ndc1_Nup       Nucleoporin protein Ndc1-Nup
        1.4    7.4   6.7          2    6.8   6.7    1.4  1  LCD1           DNA damage checkpoint protein
        1.4    7.4  33.3        1.6    7.2  33.3    1.1  1  Peptidase_S64  Peptidase family S64
        2.5    7.2  40.7          3    6.9  40.7    1.1  1  SOG2           RAM signalling pathway protein
        4.9    5.6  34.4        5.5    5.4  34.4    1.1  1  Utp14          Utp14 protein


Domain annotation for each model (and alignments):
>> SMAP  Small acidic protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -13.1  15.5         9   1.8e+04      32      32 ..      96      96 ..       7     164 .. 0.65
   2 !   38.5   1.6   8.2e-13   1.6e-09       1      75 []     166     235 ..     166     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: -13.1 bits;  conditional E-value: 9
        SMAP 32 e 32
                +
  CCE30028.1 96 S 96
                0 PP

  == domain 2  score: 38.5 bits;  conditional E-value: 8.2e-13
        SMAP   1 WgnahfssdgkrasKFlRLMGikkaaeaaasegagggaanvaadvqkrqrlfsnLeqqYeaAra..athtmrgvGLG 75 
                 W+  +++++++r+ KF+RL+G+kk  +  ++    g+     + ++++ + + ++ +q+e +++  a  t++++GLG
  CCE30028.1 166 WNVGGLEGGAARQTKFMRLLGGKKG-GVPTN---TGA---STNIKSNSIKAEADIRRQFETGMKakAEGTRQRRGLG 235
                 9999999*****************8.65432...222...3456889999**************987889******9 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  40.0   6.4e-06     0.013      62     190 ..      20     185 ..       2     190 .. 0.34

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.4e-06
         SPX  62 e........rtepstsaaadesgnsaadasssepkdeae...............slprrsplsrssrssssygglvssppsansssssddssesnpa.. 135
                 +        ++ +s+s++a+esg+s++ +ssse+++  +               +         s+++s s +++ ss++s++sssss++ss+s+++  
  CCE30028.1  20 KaaaieessDDTSSESTSASESGSSSDSSSSSESESDSSesgsssdssesgsgsD---------SDSESGSESESGSSSSSSSSSSSSSSSSSSSSSss 109
                 1223333333333333333333333333333333322222222221112222221.........11111111111111111111111111111110000 PP

         SPX 136 .......dssssssssesesssssspsllrrlfsesesreeksersyetrplr................................aekeFferL 190
                        +ssssssss+s+s+s+s ++++++  +                  +                                ++++F+++L
  CCE30028.1 110 ssssssaSSSSSSSSSSSSSESDSDKKVVKKKKK------------------KtpkpkandsknvskpadaaeqwnvggleggaaRQTKFMRLL 185
                 0000000122222222222222222222222211..................112223333444444555777888888888988999998877 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  58.7   0.00028      0.55     132     283 ..       2     152 ..       1     160 [. 0.35

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00028
       BUD22 132 kkllgiekkkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsedeekeeseddeeeeeededdedaee...deedeeaeerelaqydgllasdd 227
                 k++l+i++     e+e+kk+kk+++ ++++++++ e+++++e+ ++s++++++ese+d++e+ +++d+++++    +++++++e+++ +++ +  +s++
  CCE30028.1   2 KRRLDIKE---GGEPEAKKSKKAAAIEESSDDTSSESTSASESGSSSDSSSSSESESDSSESGSSSDSSESGSgsdSDSESGSESESGSSSSSSSSSSS 97 
                 55666666...4444444444444444444444422222222222222223333334433333333333333333333344444444444444222222 PP

       BUD22 228 eded..eyneetdeesseesdssdssesasesesessek...kkkkkkkkkkkakakkvts 283
                 ++++  +++++++++ss++s+ss+ss+s s+ses+s++k   k      kkkk++++k ++
  CCE30028.1  98 SSSSssSSSSSSSSSSSSASSSSSSSSSSSSSESDSDKKvvkK------KKKKTPKPKAND 152
                 2222112233333333333333333444444444444443322......222233333333 PP

>> LAP1C  Lamina-associated polypeptide 1C (LAP1C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  26.1   0.00022      0.45      42     173 ..      21     148 ..       6     223 .. 0.41

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00022
                 .............XXXXXXXXXXXXXX..XXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX CS
       LAP1C  42 vetigsesadtedkseseqevnlseepkdetEeedsessqsgeeghklsseslgeekldsedsvsssdktgradaqleessaalseeasdrtaasqeps 140
                 + +i+++s dt+ +s+s +e   s++++   E+ +s+ss+sg +  +++s s +++  +s+++++s+ +   ++++ ++ss+++s ++s+ ++ s  +s
  CCE30028.1  21 AAAIEESSDDTSSESTSASESGSSSDSSSSSES-ESDSSESGSSSDSSESGSGSDSDSESGSESESGSS---SSSSSSSSSSSSSSSSSSSSSSSSSSS 115
                 223333333333333333322222222222221.11222221111111111111111111111111111...111111111111111111111111222 PP

                 X......XXXXXXXXXXXXXXXXXXXXX..XXX CS
       LAP1C 141 aadsqeaqssghskaeqeeqdtlrrtrllvpea 173
                 a+ s+++ ss+ s+++  +++++++ + ++p+ 
  CCE30028.1 116 ASSSSSSSSSSSSSESDSDKKVVKKKKKKTPKP 148
                 211111111111111111111111111111111 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  22.1   0.00068       1.4     375     463 ..      42     159 ..       4     224 .. 0.50

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00068
    Ndc1_Nup 375 kelprlsksplkkk.....ddeifgn............................sltaeaspkssssskegvekalsslakspgqs.psptarlsprar 439
                 ++++++s+s++ ++           +                            s+++++s++sssss+++ +++ ss a+s ++s +s +++ s++++
  CCE30028.1  42 GSSSDSSSSSESESdssesG-----SssdssesgsgsdsdsesgsesesgssssSSSSSSSSSSSSSSSSSSSSSSSSSASSSSSSsSSSSSSESDSDK 135
                 22222221111111111110.....01112222223333334455555554432222222222222222222222222222222223333333338888 PP

    Ndc1_Nup 440 kllekaksrllskeqkealsesti 463
                 k+++k+k+++ ++++  + + s++
  CCE30028.1 136 KVVKKKKKKTPKPKANDSKNVSKP 159
                 888888888888544433333333 PP

>> LCD1  DNA damage checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.7   0.00099         2      82     111 ..     115     211 ..      81     231 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00099
                 -........................THHHHHHHHH....................................................HHHTSTTT-- CS
        LCD1  82 s........................kKkRKieestaedaslsls...........................................lkkkviklqk 111
                 s                        kKk+K+ + +a+d+++ ++                                            k++ ik + 
  CCE30028.1 115 SasssssssssssssesdsdkkvvkKKKKKTPKPKANDSKNVSKpadaaeqwnvggleggaarqtkfmrllggkkggvptntgastnIKSNSIKAEA 211
                 0111122222334455556666665888999888877764433334444444444444444444444444444444444444444445555555555 PP

>> Peptidase_S64  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  33.3   0.00078       1.6      14     142 ..      31     155 ..       5     220 .. 0.42

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00078
  Peptidase_S64  14 eeskekkslepsksnskskesgesssslkelrpifesekaseeessaeedsstelaesssekssskqssSlfS.ksrktystkqssaksssskakk 108
                    ++s++++ +e+ +s+++s++s+    s++++++   s+++s+e+ s ++++s++ +es+s +sss +ssS  S +s +++s+++ss++ss+s+++ 
     CCE30028.1  31 TSSESTSASESGSSSDSSSSSE----SESDSSES-GSSSDSSESGSGSDSDSESGSESESGSSSSSSSSSSSSsSSSSSSSSSSSSSSSSASSSSS 121
                    1111111111111111111111....11111111.1111222222222222222122222222211111111101222222222222222222333 PP

  Peptidase_S64 109 sssvakaedvgkplrvletekltslntvleeeee 142
                    sss+++ ++ +   +v++++k ++ ++ ++++++
     CCE30028.1 122 SSSSSSSSESDSDKKVVKKKKKKTPKPKANDSKN 155
                    3455566666666677775554443333333332 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  40.7    0.0015         3     163     302 ..      19     158 ..       5     231 .. 0.43

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0015
        SOG2 163 kptaskkkragrtksksisttssgssstlvssaesstesrassvtytartRhagsfsaqdveqGaalt..plrsdqipfnlsrsrrssssgnsaspaan 259
                 k+ a+ +++   t+s+s+s ++sgsss++ ss es++ s++s +   +++ ++gs s  d+e G +++  +++s++ + ++s+s++ssss+ s+s++++
  CCE30028.1  19 KKAAAIEESSDDTSSESTSASESGSSSDSSSSSESESDSSESGSS--SDSSESGSGSDSDSESGSESEsgSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 115
                 333344445555555555555555555444444444444443333..3335567777778888888885421111111111111111111111111111 PP

        SOG2 260 gaqsetsersasssgvqssasstPlgegstsppgalsrqslst 302
                 +++s++s +s+sss+++s +  +  ++++t++p+a  ++++s+
  CCE30028.1 116 ASSSSSSSSSSSSSESDSDKKVVKKKKKKTPKPKANDSKNVSK 158
                 1111111111111112222222222222222222222222222 PP

>> Utp14  Utp14 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  34.4    0.0027       5.5     405     589 ..      25     156 ..       2     230 .. 0.35

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0027
       Utp14 405 eelrrelekgdeeeedeeeeeeeekesknvGrrvfgpskkskkkekkkkkkeskakkekreeeeedeskaaeekakke...kskksekkkkkkkeesak 500
                 e           e++d++       +s+++     g+s++s+++++++++++++ ++++++e+ + +++++e+ +++e   +   s++++++++++s++
  CCE30028.1  25 E-----------ESSDDT-------SSESTSASESGSSSDSSSSSESESDSSESGSSSDSSESGSGSDSDSESGSESEsgsS---SSSSSSSSSSSSSS 102
                 1...........111111.......111111111122222222222222222222222222222222222222222211110...11111111111111 PP

       Utp14 501 eeeeeeeenpwlae.eekkkskkeevaaekssskakkskakakkkkkksskkkeaakekkkkdeeidlkkketlkekekt.lkkkkkedke 589
                 ++++++++++  ++ +++++s                                     ++++++e d +kk+ +k+k+kt ++k++++++ 
  CCE30028.1 103 SSSSSSSSSSSSSAsSSSSSS-------------------------------------SSSSSSESDSDKKVVKKKKKKTpKPKANDSKNV 156
                 111111111110001111111.....................................111111122221111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2019  (0.112611); expected 358.6 (0.02)
Passed bias filter:                      699  (0.0389871); expected 358.6 (0.02)
Passed Vit filter:                       378  (0.0210832); expected 17.9 (0.001)
Passed Fwd filter:                       174  (0.00970495); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.86u 0.37s 00:00:02.23 Elapsed: 00:00:00.54
# Mc/sec: 1311.97
//
Query:       CCE30029.1  [L=46]
Description: uncharacterized protein CPUR_03877 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-12   46.3   0.1    3.5e-12   46.2   0.1    1.0  1  RAMP4     Ribosome associated membrane protein RAMP4
  ------ inclusion threshold ------
      0.064   13.3   0.0      0.076   13.0   0.0    1.1  1  YqzE      YqzE-like protein


Domain annotation for each model (and alignments):
>> RAMP4  Ribosome associated membrane protein RAMP4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.1   3.9e-16   3.5e-12      20      58 ..       1      42 [.       1      44 [. 0.94

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 3.9e-16
       RAMP4 20 rGkvpkslk...kkekkspvgpwlLglfiFVViGSaifqiir 58
                +Gk+++++k   k+++ksp++p+++g++ F+++G+++f+ ++
  CCE30029.1  1 MGKAEEQIKkrvKETHKSPISPIWIGVLGFIIFGGLLFEALS 42
                5999***99999***************************886 PP

>> YqzE  YqzE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.5e-06     0.076      21      50 ..       3      32 ..       1      36 [. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.5e-06
        YqzE 21 keeRkkkkeekkeekepfsyrwFGviPlal 50
                k e + kk  k+  k+p+s  w Gv+++ +
  CCE30029.1  3 KAEEQIKKRVKETHKSPISPIWIGVLGFII 32
                889999********************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 355.86
//
Query:       CCE30030.1  [L=113]
Description: uncharacterized protein CPUR_03878 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1345  (0.0750181); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 894.28
//
Query:       CCE30031.1  [L=778]
Description: probable beta-glucosidase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-44  150.7   0.0    1.6e-43  149.1   0.0    1.9  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    2.8e-38  132.1   0.0    4.9e-38  131.3   0.0    1.3  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    2.3e-22   78.9   0.1    4.1e-22   78.1   0.1    1.5  1  Fn3-like         Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.1   0.0   2.6e-47   1.6e-43       2     188 ..     380     623 ..     379     643 .. 0.87

  Alignments for each domain:
  == domain 1  score: 149.1 bits;  conditional E-value: 2.6e-47
                      EEEEEGSS--S-S-STEEEEEESGGGS......................................SS-SS-BSSS----S---HHHHHHHHHHH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxx......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C   2 VLLkNennlLPLkkklkkiaviGpnad......................................etlklGggsgtvtvsylvsplegirerle 57 
                      VL+kNe+++LPL kk + + v+G +a+                                      +t+  Gg  gt ++ y+ +pl++i++r++
       CCE30031.1 380 VLVKNERQALPL-KKPRMVSVFGYDATvpatkntdklfelgymsskemgqavlgreyrfdqaargGTIVAGGRAGTNAPAYISDPLSAIQQRAQ 472
                      9***********.7778****************************************************************************9 PP

                      ........-HHHHHHHHHHHTSEEEEEEEES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTT.GTTTEEEEEE-S-- CS
                      x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  58 s......eegideaveaakeaDvavvvvgedpeiegEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpvavepw.keenvkAilaawlp 144
                      +       + ++   ++ +++ +++v++++    ++Eg+Dr+ l+ + ++d+l+ +vaa++ n+vvv++++g   v++w +++nv+A + a+lp
       CCE30031.1 473 KdntwvnWDLSSPDPDVNAASQACLVFINAM---ATEGWDRQGLHDD-FSDALVLNVAAKCANTVVVIHAAGIRLVDSWiEHPNVTAAVLAHLP 562
                      99****9778888899999999*********...*********9998.********************************************** PP

                      GCCHHHHHHHHHTTSS---B--SS-EESSSGGG.............................. CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx................x RF
  Glyco_hydro_3_C 145 GqegGtaiadvLfGdvnPsGkLpvtfpksledlpddyyeek...dt................y 188
                      Gq++G a++ +L Gd+n+sGkLp+t +++++d+p+  y ++   +                 y
       CCE30031.1 563 GQDSGAALVSLLWGDANFSGKLPYTLARNESDYPV--YAPCgrgRGnttnpqcdyaegvyldY 623
                      *********************************66..66665331123344444444555553 PP

>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.0   8.2e-42   4.9e-38      69     318 ..      96     332 ..      79     333 .. 0.91

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 8.2e-42
                    EEEE---BTTB---SSS.---S-HHHHHHHT-HHHHHHHHHHHHHHHHHHT--EE---B--.---STTSSSGGGSS-SSHHHHHHHHHHHHHHHHH CS
  Glyco_hydro_3  69 llavDqegGlvqrlgeg.tlfPsalalaatssldlikelgriiakelralgididfaPvvd.vnrdprngigvrsFsedpelvaalaaamvkGlqg 162
                    l+ +D+ +G++    +     Ps l  +a+++++l +e g  +a+e ra g++i ++P +  ++r p  g++ ++Fs dp+l+++l a+++ G+q+
     CCE30031.1  96 LCLMDAGNGVR--ATDMvSAWPSGLHVGASWDRNLTYERGLWMAREFRAKGVNIALGPNAGpLGRTPLGGRNWEGFSVDPYLAGQLNAKTIVGMQN 189
                    56677777777..44555899*************************************99559********************************* PP

                    TT-EEEEEEETTGTT-SSET...TTSEEB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES- CS
  Glyco_hydro_3 163 agvaatvKHFpghGdgavds...hkelptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDa 255
                    agv+a +KHF++  + +      + e + ++++ + l+e +l pf   ++ag+ sVM +   ++ +++t a  ++kll +vL+ el F+G+v+ D+
     CCE30031.1 190 AGVMANLKHFIANEQETYRRpyfGIEAASSNIDDKTLHEYYLWPFMDGVRAGAASVMCS---YNRVNNTYACDNSKLLNGVLKGELAFEGFVMLDW 282
                    ************843333323447799999*****************************...********************************** PP

                    TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHHHHH CS
  Glyco_hydro_3 256 lamkeiadrggkeeavvlaLkAGvDilLvpeertseikalkkavkeGeltearidesvrrvlr 318
                                ++   ++ +AG+D+l+     +   ++l +av++G + e+r+ + ++r+l 
     CCE30031.1 283 N-----------AQHTLRSANAGLDMLMPGGGSW--GENLTEAVRNGTVEEKRVTDMATRILA 332
                    9...........66778899********999998..8************************85 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.1   6.9e-26   4.1e-22       1      71 []     698     764 ..     698     764 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 6.9e-26
                 EEEEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESSS CS
    Fn3-like   1 evvqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgtss 71 
                 e++qlYv+ p +    p+k+L+gF+kv+LapG+ + v+f+l+r+dls w + kq+wv+++Geytv+vg+ss
  CCE30031.1 698 EIAQLYVRIPGA----PPKQLRGFDKVSLAPGQDAVVRFELTRRDLSEWHVGKQRWVLQEGEYTVFVGASS 764
                 799********9....*****************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5503.67
//
Query:       CCE30032.1  [L=1025]
Description: uncharacterized protein CPUR_03880 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-79  267.9   0.0    1.3e-77  261.7   0.0    3.2  2  Med5      Mediator complex subunit Med5


Domain annotation for each model (and alignments):
>> Med5  Mediator complex subunit Med5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.014   2.6e+02      24     117 ..      50     115 ..      29     268 .. 0.68
   2 !  261.7   0.0   7.4e-82   1.3e-77     305     956 ..     334     881 ..     320     939 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.014
        Med5  24 lnlykelynekfiskienedeeeesekatevleklssdlvkllnsek...sllladyvvellf...vnynseLvk..efLpklksvknstvLihllsks 114
                  +                                    +++l++s++   s+l+a++ ++      v+ +++++   + L++   v++ ++L +l+++s
  CCE30032.1  50 ND------------------------------------FIRLVHSQHplpSILVAELFLRPQPdndVSPDPRIPPyiQALSQHGYVDAPSILRALYKYS 112
                 44....................................4444444442223455555555554555555555555555666666666666666666666 PP

        Med5 115 saf 117
                 s +
  CCE30032.1 113 SLH 115
                 655 PP

  == domain 2  score: 261.7 bits;  conditional E-value: 7.4e-82
        Med5 305 eknvdalltdLIetsFtcfaqfvsNklYhqensnlnLlerkWviFiikkLPlllle.....nssdnpqvitnALesiddkVvkaiksyssekddvknrn 398
                 + +++  ++dLI +sF    ++++N+ ++ e s+   l++    F+i kLPl++ +      +++++ +it+AL+++d     ++++ s ++d+ +++n
  CCE30032.1 334 SGQTQSGVIDLILASF----DVLANAVFRSEASKDAHLLKT---FLISKLPLIVCQlctgfDINSTEFCITEALNRVDT---TIFPTTSLMFDETRSNN 422
                 56788999********....***********9998888788...************99999888889************...9**********997766 PP

        Med5 399 edLFDDypstslDiRhdFlkslimlkLqppsvineyLredqmvDvksLpttddlvitnsqgvkelvsdikef..iiselesleleaiaddsnsssngll 495
                              +R +F  ++++++L+    ++++L+e +m   +sL        ++   v++ ++d ++   +i+++e+++++ +a           
  CCE30032.1 423 PYT--------DSVREEFCTACALHGLVQRDHVERILGETSMSYESSLEK-----HSKDRLVQDCFADAEKMqgLIRDVEKIDGNVGA----------- 497
                 554........45*****************************43333332.....23445567778888777899**********999........... PP

        Med5 496 qllnnfetiaptkqkeisnaildlleelieeketeklkkicalltfnvshsltviLsfvsPekileklikfiDvswessveskeedsddddfesqnvyl 594
                                 +++a++d++++l+++k+t +l+ +c+ l  + +h+l+ +L+f +   il++l++++D +w+         +++d++e+q++y 
  CCE30032.1 498 ----------------VAHALVDIMRQLCHNKDTVSLHLLCSQL-AQKPHTLDILLLFEKVSAILQPLCQLLD-NWH---------YEEDQGEYQPIYE 569
                 ................9***************************.9999************************.***.........9************ PP

        Med5 595 sfglillliiaivktydisledvalksseldiknsfiiklisklseIpdafvldesneeddelqeksnkllqsWlrdLF..vngslSdeliksvdvkql 691
                 +fg+illli+a++++y++  +d+++ s+     +s ++k +++ +           ++e d+l  +++ ++  W++ LF  + g+l d+l++s+ + ++
  CCE30032.1 570 EFGSILLLILAFSYRYNLTAVDMGIMSP-----DSSVAKILTSAHV----------SRERDDLSDQEKGHVTGWIKGLFssDSGGLGDDLMSSCTPHDF 653
                 ****************************.....********99887..........456789999**************98899*************** PP

        Med5 692 akLiPfifkQvllavelgvisdisnlvgGfeYllqpfLlvglikivtWLeqyLselkndktaeellekilklLnsllnpsslnedskafhsavLrlnav 790
                   L+++if+ +++a   g ++  + l+gG+eYl ++fLl++l+ ++  L++yL+  +++       ++i+++L+ +l pss++++++a+ s v +l+a 
  CCE30032.1 654 HSLVATIFQNIVVAYAHGYLK-DEALKGGIEYLVDTFLLPSLVPALRFLADYLWVEQKE------QKAIIRILQLILLPSSISGEASAMLSSVRNLVAA 745
                 ********************5.599*****************************87766......346899**************************** PP

        Med5 791 sLlkvlrkfrvresqsnYgiYssesqgdpkleslIskLvsvlnispiydvdsrvisseenaysqkelsyekllitnenplnkiltnqinsf..Wnlhss 887
                 +L + lr+ +++  ++                          ni+p++ ++   +   +      + ++++++i ++ ++   l+++++ +  W+ h+ 
  CCE30032.1 746 PLDHSLRTYQRQDPKN-------------------------QNIEPLLMALRDNLPLSRRTGGADHCELDSWTISSSTGMAGALRHTVQGLvqWAIHPA 819
                 ***********55333.........................2666666666666665555555566667*****************************9 PP

        Med5 888 .....tyYnldyLkeliklvtpkkfLedvlrtLkykvtsygvpgsrnkqsneesehvldylfyflvlsdvesqe 956
                        Y++++L ++ ++ ++k++L  +++++ ++ ++            + + +v+d++  +++++dv ++ 
  CCE30032.1 820 antiaAPYTHRQLMAMTRVAGAKRTLCLLVDEVRTQSEA------------GSASIVYDVVGAMICAPDVTNEP 881
                 9999999****************9999999999999988............899****************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1025 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 6789.13
//
Query:       CCE30033.1  [L=532]
Description: probable adenylosuccinate lyase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-18   67.0   3.4    2.7e-17   63.1   3.4    2.2  1  Lyase_1    Lyase
    1.7e-16   60.5   0.0    6.6e-16   58.6   0.0    2.1  1  ADSL_C     Adenylosuccinate lyase C-terminus
  ------ inclusion threshold ------
      0.053   12.8   0.3       0.11   11.7   0.3    1.5  1  IKBKB_SDD  IQBAL scaffold dimerization domain
       0.53   10.3   9.5       0.16   12.0   6.1    1.8  2  FlxA       FlxA-like protein
       0.58   10.0   3.4          1    9.2   2.0    2.1  2  DivIC      Septum formation initiator


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   3.4   7.6e-21   2.7e-17      14     303 ..      54     348 ..      44     355 .. 0.75

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 7.6e-21
                 HHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSSGIIIIITTT--HH CS
     Lyase_1  14 ftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekvepndkvhtgqSsn 112
                 f++rsr   + +         l++a a++++d+  + a++++ +++ l  ++ +  f+ ++i+e++     m+     g ++    ++++ +h g +s 
  CCE30033.1  54 FSQRSRHSTWRK-----LWLGLAEAEASLGIDV--VTAEALDQMRAHLT-VSDE-DFATASIEEKIRRHDVMAHVHAFG-VV--APAAAGIIHLGSTSC 140
                 555555444444.....4455778888888888..77777777888887.6666.677777777776655554444444.33..48999*********9 PP

                 HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEETTTTTTTSSTT.TS CS
     Lyase_1 113 DqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvellgggtavgtgl.na 210
                  + +    +++++al + Ll++l + i+ l + a+  k+ + +G Th q+A+P+t g   + +a+ l +d+e ++ ++  l+   ++g t++ + + ++
  CCE30033.1 141 FVTDNTELILMRDAL-DILLNKLAKVISNLAAFANRWKSEPTLGLTHDQPAQPITVGRRAAQWAQDLMMDLEAIEAVRSGLKFRGAQGTTGTQASFlEI 238
                 888888889999***.67**********************************************************************88876654133 PP

                 CCTHHHHHHHHHH..HHHCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-T..............T.. CS
     Lyase_1 211 dpefaelvakela..kvtglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSS..............i.. 290
                  +  ++  ++ l+    ++++   + ++ +++ +r   + ++ a++ la+s  k++ D+rll+s    ++e+   +s++GSS              +  
  CCE30033.1 239 FQG-DHTKCDRLNelLCEKFGfRACYDISTQTYTRKVDLIVANAVAGLAVSAHKMCTDIRLLAS--NKEIEEPKEASQIGSSgkshrtliifrassVmk 334
                 222.45555555522234455555788888888888888899**********************..788888888888888744444443333333234 PP

                 .STTTEBTHHHHHH CS
     Lyase_1 291 .MPgKvNPvqlEll 303
                  MP K+NP  +E +
  CCE30033.1 335 sMPYKRNPMRSERI 348
                 46777777777766 PP

>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   1.8e-19   6.6e-16       1      73 []     422     504 ..     422     504 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 1.8e-19
                 TGGGHHHHHHHHH.HTH-HHHHHHHHHHHHHHHHHC.........HHHHHHT-HHHHCHHCHHHHHT-GGGCCTTHHHHHHHH CS
      ADSL_C   1 GlifservllaLv.kglgReeAyelVqeaamkawee.........llelLaadpevkkseeeldalfdpayylgsadeivdrv 73 
                 +++++e+++++Lv kg +R+eA+e ++ ++ +a  +         l+e+++ ++ +k  + eld +++p+ y+g+++eiv+++
  CCE30033.1 422 PFMVTEAIIMKLVaKGASRQEAHEKIRVLSNQASSTvkdegkpndLIERIRGNEYFKPIWGELDSMLQPELYIGRCPEIVNKF 504
                 79***********88********************9*********************98899******************875 PP

>> IKBKB_SDD  IQBAL scaffold dimerization domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   3.1e-05      0.11     138     175 ..       8      45 ..       1      68 [. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.1e-05
   IKBKB_SDD 138 qeeevkkLdeeimalqteivelqrsPlarrqgevledl 175
                  + ++++L+++im+lq+++ e q+sP+   q+      
  CCE30033.1   8 AQTQIQELQKKIMQLQAQVEEPQKSPYDTYQTSLTSRY 45 
                 5789***********************87666555444 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.1   4.5e-05      0.16      50      77 ..       4      31 ..       1      52 [. 0.65
   2 ?   -2.2   0.1       1.2   4.2e+03      12      27 ..     440     455 ..     435     466 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.5e-05
        FlxA 50 qqqliqaQIqqlqaQIaqlqqqqaekaq 77
                q+q  q+QIq lq+ I qlq+q +e ++
  CCE30033.1  4 QAQDAQTQIQELQKKIMQLQAQVEEPQK 31
                5666666666666666666666555544 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
        FlxA  12 ssgsasqiasLqkQik 27 
                  ++  ++i+ L +Q +
  CCE30033.1 440 RQEAHEKIRVLSNQAS 455
                 4444555555555544 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.0   0.00028         1      24      50 ..       3      29 ..       1      34 [. 0.85
   2 ?   -1.7   0.0      0.73   2.6e+03      33      53 ..     159     179 ..     153     181 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00028
                HHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC 24 qeiaalqaelaklkaeneeLeaevkdL 50
                 + ++ q ++++l++++++L+a+v++ 
  CCE30033.1  3 DQAQDAQTQIQELQKKIMQLQAQVEEP 29
                578999*****************9975 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.73
                 HHHHHHHHHHHHHHHCC-XXX CS
       DivIC  33 laklkaeneeLeaevkdLksd 53 
                 l+kl + + +L+a  +++ks+
  CCE30033.1 159 LNKLAKVISNLAAFANRWKSE 179
                 689999999*********865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1277  (0.0712254); expected 358.6 (0.02)
Passed bias filter:                     1017  (0.0567237); expected 358.6 (0.02)
Passed Vit filter:                       136  (0.00758548); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 3741.67
//
Query:       CCE30034.1  [L=178]
Description: uncharacterized protein CPUR_03882 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1387.64
//
Query:       CCE30035.1  [L=199]
Description: uncharacterized protein CPUR_03883 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1619.44
//
Query:       CCE30036.1  [L=287]
Description: uncharacterized protein CPUR_03884 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-59  202.5   8.1    1.5e-59  202.3   8.1    1.1  1  DUF572    Family of unknown function (DUF572)
  ------ inclusion threshold ------
      0.051   13.7   2.8        1.8    8.7   0.4    2.4  2  zf-ACC    Acetyl-coA carboxylase zinc finger domain
        1.3    9.0   5.6         10    6.1   0.1    3.0  3  DUF951    Bacterial protein of unknown function (DUF951)
        1.4    7.6   5.6        1.7    7.3   5.6    1.1  1  SAPS      SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.3   8.1   3.3e-63   1.5e-59       1     203 [.       9     225 ..       9     284 .. 0.76

  Alignments for each domain:
  == domain 1  score: 202.3 bits;  conditional E-value: 3.3e-63
      DUF572   1 kYyPPDfdpskipalrekar...lkn...rqlvvRlmaPfnmrCktCgeyIykGvkFNarKekVgnetYlgipIfrFyikCtrClneitfkTDPkntdY 93 
                 kYyPPDfdp  i   r+++    +++   r+ +vR+maPf+m+C+tCge+IykG+kFN+rKe+  + +Yl+i+If  +ikCtrC++ei ++TDPkn dY
  CCE30036.1   9 KYYPPDFDPRDIT--RRRGGrkgQEQsgtRIQTVRIMAPFSMKCTTCGEFIYKGRKFNSRKETNMEHKYLNIQIFLLHIKCTRCSAEIILRTDPKNNDY 105
                 9***********6..33333112222445**********************************9999******************************** PP

      DUF572  94 vveeGatRnfkaek.......leeeea.......kreekekeeeeaedamkklEkrtkdskkemealesLeeLqelnqrqakvdfda..nlelrkefre 176
                 ++++Ga Rn ++++            +       +ree+e++ ee+++am+ lE + +d k em+a   L+++++ n+r  + +++    ++ + + +e
  CCE30036.1 106 AMVKGAVRNAEPWRnrvaeeeS----VeerldrlEREEAEAAGEEEKNAMADLEAKNADAKLEMAAGDMLDKIRQRNARIHQSEKEGtdYVDSVVRPEE 200
                 **********999999766552....13444566888888888999*******************************9976666655115566667777 PP

      DUF572 177 ekkereeeeedeealkekislekikll 203
                 e+++r+e+e deea +  +  e++ + 
  CCE30036.1 201 EERARQERE-DEEAARRVF-AEAKARA 225
                 777777777.888888555.3222222 PP

>> zf-ACC  Acetyl-coA carboxylase zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.4   0.00039       1.8       3      13 ..      49      59 ..      48      60 .. 0.93
   2 ?    4.7   0.1    0.0073        33       2      10 ..      85      93 ..      85      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00039
      zf-ACC  3 KCpsCgemlyk 13
                KC+ Cge +yk
  CCE30036.1 49 KCTTCGEFIYK 59
                9*********8 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0073
      zf-ACC  2 tKCpsCgem 10
                +KC++C++ 
  CCE30036.1 85 IKCTRCSAE 93
                8*****985 PP

>> DUF951  Bacterial protein of unknown function (DUF951)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0023        10      22      45 ..      39      62 ..      33      70 .. 0.79
   2 ?    4.3   0.1    0.0086        38      30      43 ..      84      97 ..      82     102 .. 0.87
   3 ?   -0.8   0.2      0.34   1.5e+03       5      14 ..     266     275 ..     263     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0023
      DUF951 22 ilRvGadiklkClgcgrevmlpRs 45
                 +R+ a + +kC++cg+ +   R+
  CCE30036.1 39 TVRIMAPFSMKCTTCGEFIYKGRK 62
                578888999*******99876665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0086
      DUF951 30 klkClgcgrevmlp 43
                 +kC++c  e++l 
  CCE30036.1 84 HIKCTRCSAEIILR 97
                69********9985 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.34
      DUF951   5 divemKKpHP 14 
                  +v+ KK H+
  CCE30036.1 266 RVVKKKKDHA 275
                 68999****8 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   5.6   0.00039       1.7     249     345 ..     124     229 ..      88     261 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00039
        SAPS 249 erDevrerlleel........tseeealedvs.deaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdasseesalaeet 338
                 e++ v erl + +        ++e++a+ d++ ++a+ + + ++ d+ dk ++ + + ++s+k+ +++ d+  + ++ee  +++++d+++ + + ae +
  CCE30036.1 124 EEESVEERLDRLEreeaeaagEEEKNAMADLEaKNADAKLEMAAGDMLDKIRQRNARIHQSEKEGTDYVDSVVRPEEEERARQEREDEEAARRVFAEAK 222
                 33333222222223333334466688888888566667778899999**********999999999999999999999999999999999999887777 PP

        SAPS 339 eeklrkk 345
                 + +  ++
  CCE30036.1 223 ARAAAEE 229
                 7666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1411  (0.0786993); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2126.74
//
Query:       CCE30037.1  [L=344]
Description: related to mouse KIN17 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-52  176.5   1.0    1.8e-52  176.5   1.0    1.8  3  Kin17_mid    Domain of Kin17 curved DNA-binding protein
    5.8e-05   23.3   1.8    0.00016   21.8   1.8    1.9  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
     0.0002   21.7   4.0    0.00035   20.9   3.3    1.9  2  zf-met       Zinc-finger of C2H2 type
     0.0076   16.6   0.4     0.0076   16.6   0.4    2.2  2  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
  ------ inclusion threshold ------
      0.042   13.6   2.7       0.12   12.2   2.7    1.7  1  SurA_N_3     SurA N-terminal domain


Domain annotation for each model (and alignments):
>> Kin17_mid  Domain of Kin17 curved DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.5   1.0     5e-56   1.8e-52       1     126 []      52     177 ..      52     177 .. 0.99
   2 ?   -4.3   0.3       4.5   1.6e+04     109     121 ..     190     199 ..     180     206 .. 0.40
   3 ?   -3.6   0.6       2.8     1e+04      98     115 ..     303     320 ..     293     327 .. 0.48

  Alignments for each domain:
  == domain 1  score: 176.5 bits;  conditional E-value: 5e-56
   Kin17_mid   1 rqleliaentkkvieeyskeFekdFlklLrtrhgekkveankvYqeyiqdkdHvhmNaTkwtsLteFvkyLgkegkvkveetekgllisyidrspeale 99 
                 rq+++++e++kk+i+++s++F +dFl+lL+t hgek+v++n++Yqeyi++k+H+hmNaT+w sLteF kyLgkeg+++veetekg++is+id+sp+al+
  CCE30037.1  52 RQMLVVGEDPKKFINQFSEDFLRDFLQLLKTGHGEKQVQMNHFYQEYIANKEHIHMNATRWPSLTEFAKYLGKEGICRVEETEKGIHISWIDNSPDALR 150
                 89************************************************************************************************* PP

   Kin17_mid 100 rkeklekkekaekedeereekllekqi 126
                 r+e+l++ke++++ de+ e++++++qi
  CCE30037.1 151 RHEALRRKEAQDQGDEQLEQRMIREQI 177
                 **************************8 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 4.5
   Kin17_mid 109 kaekedeereekl 121
                 ++e+++ee   ++
  CCE30037.1 190 ASEAKEEE---RE 199
                 22222222...22 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 2.8
   Kin17_mid  98 lerkeklekkekaekede 115
                 +e+ +k+++ e+  +e+ 
  CCE30037.1 303 IEQPQKMSEAERIMREEM 320
                 444444444443333333 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   1.8   4.6e-08   0.00016       2      26 ..      26      50 ..      25      51 .. 0.96

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.6e-08
                 CBBTTTTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHlkSKkH 26
                 +YC++C+K++ ++n ++ H  S +H
   CCE30037.1 26 WYCQVCEKQCRDANGFKMHTQSESH 50
                 8*********************999 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   3.3   9.7e-08   0.00035       1      25 []      26      50 ..      26      50 .. 0.96
   2 ?   -2.5   0.0       2.1   7.7e+03      11      20 ..     144     153 ..     144     154 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 9.7e-08
      zf-met  1 fyCelCnvtfnsesqlksHlqGKkH 25
                +yC +C +++ + + +k+H q+  H
  CCE30037.1 26 WYCQVCEKQCRDANGFKMHTQSESH 50
                9********************9777 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.1
      zf-met  11 nsesqlksHl 20 
                 ns+ +l+ H 
  CCE30037.1 144 NSPDALRRHE 153
                 7999***996 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   2.1e-06    0.0076      42      90 ..      11      66 ..       3      74 .. 0.71
   2 ?    0.5   0.4      0.21   7.6e+02      64      92 ..      93     121 ..      82     125 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.1e-06
   zf-C2H2_2 42 ylrekiee......kleClyCekefkslealreHmkkkgHckine.eeeeekkeie 90
                +l +k+++      ++ C +Cek++++ + ++ H ++++H + +    e+ kk i+
  CCE30037.1 11 HLANKLKSkglqrlRWYCQVCEKQCRDANGFKMHTQSESHVRQMLvVGEDPKKFIN 66
                44444444444467899***********************9977633444444444 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.21
   zf-C2H2_2  64 ealreHmkkkgHckineeeeeekkeiekf 92 
                 + ++e +++k+H  +n ++ ++ +e++k+
  CCE30037.1  93 HFYQEYIANKEHIHMNATRWPSLTEFAKY 121
                 55788899999999987665555555554 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.7   3.3e-05      0.12      45     123 ..     164     240 ..     156     246 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.3e-05
    SurA_N_3  45 ngekIsraefqqayrrqleqlrqqlggnldaelldelglrqqvldqlidealllqeakklglsvsdeevakeiasipaF 123
                 ++e++ ++ +++++rr ++q++ +     ++++ +e++lr+q  d+ i+    +++a k+g+ ++ e+v+ e  ++p++
  CCE30037.1 164 GDEQLEQRMIREQIRRAQQQASASA--GASEAKEEERELRRQDGDEKITLSFGSKKATKNGIGTTAEAVDGEEGKTPSL 240
                 5666777777777777777766666..567777788*********************************9887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1426  (0.0795359); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2519.71
//
Query:       CCE30038.1  [L=121]
Description: related to SPT4-transcription elongation protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-32  112.1   0.2    1.3e-32  111.8   0.2    1.1  1  Spt4           Spt4/RpoE2 zinc finger
  ------ inclusion threshold ------
      0.058   13.1   0.2      0.074   12.8   0.2    1.2  1  TBCC           Tubulin binding cofactor C
      0.063   13.3   0.2       0.14   12.2   0.1    1.6  2  Coronavirus_5  Coronavirus gene 5 protein
       0.33   10.9   3.4          5    7.1   0.0    2.7  2  Cys_rich_CPXG  Cysteine-rich CPXCG


Domain annotation for each model (and alignments):
>> Spt4  Spt4/RpoE2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.2   2.8e-36   1.3e-32       1      77 []      13      90 ..      13      90 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 2.8e-36
        Spt4  1 lrACllCklvktedqFeeegCpnC.eilelkgdkekvsectseefeGlvaildpekSwvAkwqrldkkvpglYAlkve 77
                lrAC+ C++v+t ++F++egCpnC e+l+l+g+++++++cts+ feGl++++dp+kSwvAkwqrld +v+glYA+kv+
  CCE30038.1 13 LRACMVCSIVMTASRFRDEGCPNCeEFLHLAGSQDQIESCTSQVFEGLITLADPSKSWVAKWQRLDGYVAGLYAIKVS 90
                69**************************************************************************95 PP

>> TBCC  Tubulin binding cofactor C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   1.6e-05     0.074      43      84 ..      12      54 ..       4      67 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
                EEES-BS-EEE---SEEEEES-BS-EEE---S.SEEEEES-BS CS
        TBCC 43 fiedcenctivvacrqlrihdctnvdvylltk.srPiiedskg 84
                +++ c  c iv+ + ++r + c n++ +l+   s+  ie++++
  CCE30038.1 12 YLRACMVCSIVMTASRFRDEGCPNCEEFLHLAgSQDQIESCTS 54
                6899**********************99996525777777775 PP

>> Coronavirus_5  Coronavirus gene 5 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.034   1.5e+02      19      44 ..      11      37 ..       6      40 .. 0.76
   2 ?   12.2   0.1   3.1e-05      0.14      19      52 ..      27      61 ..      16      79 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.034
  Coronavirus_5 19 iylregldcvyflnka.gqaepcpact 44
                    ylr  + c   +  +  + e cp c 
     CCE30038.1 11 RYLRACMVCSIVMTASrFRDEGCPNCE 37
                   5999999998777654157899**996 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.1e-05
  Coronavirus_5 19 iylregl.dcvyflnkagqaepcpactslvfqgkt 52
                    +  eg  +c  fl  ag  +   +cts vf+g  
     CCE30038.1 27 RFRDEGCpNCEEFLHLAGSQDQIESCTSQVFEGLI 61
                   45556653799*********************965 PP

>> Cys_rich_CPXG  Cysteine-rich CPXCG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0011         5      17      31 ..       6      20 ..       4      30 .. 0.87
   2 ?    2.4   1.9     0.033   1.5e+02       3      27 ..      33      52 ..      32      54 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0011
  Cys_rich_CPXG 17 sagdqeYieDCqvCC 31
                    +g+q+Y   C vC 
     CCE30038.1  6 TSGQQRYLRACMVCS 20
                   578***********5 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.033
  Cys_rich_CPXG  3 CPyCgeeievlvDlsagdqeYieDC 27
                   CP+C e +++     ag+q+ ie C
     CCE30038.1 33 CPNCEEFLHL-----AGSQDQIESC 52
                   9999988775.....6778888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 915.27
//
Query:       CCE30039.1  [L=142]
Description: uncharacterized protein CPUR_03887 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1065.29
//
Query:       CCE30040.1  [L=475]
Description: probable phosphoprotein phosphatase (serine/threonine specific protein phosphatase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-32  110.8   0.9    8.2e-32  109.4   0.9    1.8  1  PPP5         PPP5 TPR repeat region
    2.5e-30  106.5   0.1    4.2e-30  105.8   0.1    1.3  1  Metallophos  Calcineurin-like phosphoesterase
      5e-17   60.9   1.0    3.8e-05   23.3   0.0    3.5  3  TPR_1        Tetratricopeptide repeat
    4.1e-14   51.5   0.6     0.0022   18.0   0.0    3.5  3  TPR_2        Tetratricopeptide repeat
    6.8e-10   38.5   1.3     0.0015   18.2   0.0    3.4  3  TPR_11       TPR repeat
    4.9e-07   29.5   0.2       0.22   11.8   0.0    3.6  3  TPR_8        Tetratricopeptide repeat
    0.00016   22.1   0.0        1.5    9.4   0.0    3.2  3  TPR_19       Tetratricopeptide repeat
    0.00043   20.4   0.1    0.00093   19.3   0.1    1.6  1  TPR_9        Tetratricopeptide repeat
     0.0016   18.7   0.4        4.9    7.8   0.1    3.6  3  TPR_17       Tetratricopeptide repeat
     0.0082   16.9   0.0        5.3    8.1   0.0    3.2  2  TPR_14       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.099   11.8   0.1        6.3    5.9   0.0    2.2  2  TPR_15       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PPP5  PPP5 TPR repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.9   5.1e-35   8.2e-32       1      94 []     113     203 ..     113     203 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 5.1e-35
        PPP5   1 lkeceklirreaFekAIeveekesasetldlesieveksYdGprLeeeeekitqeFvkamierfkkgkklhkkyvyaillkvkellkkepslve 94 
                 l+ec+k++r+ aF  AIe ++++sa+e +dl+s+ ve+ YdG+rL   e+++tqeF+++m+erfk++kk+h+kyvy+i+++vk+++ +e ++ve
  CCE30040.1 113 LEECKKIVRQMAFFDAIEIGDEPSAAEGIDLDSMVVEDGYDGVRL---ENEMTQEFIDDMTERFKNNKKIHRKYVYQIIIAVKKIIYDEATMVE 203
                 68*******************************************...668*****************************************97 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.1   2.6e-33   4.2e-30       4     202 ..     213     406 ..     211     408 .. 0.90

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 2.6e-33
                  EEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHHHHHH CS
  Metallophos   4 lvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygylgifs 92 
                  +++gD+H     gq+ dl++l+++  ++++  ++l++GD+vdrg++++e++ l +a+++ +p+ ++l +GNHe        gfe e++ ky       
   CCE30040.1 213 TICGDTH-----GQYFDLMELFRRNGSPSDKHWYLFNGDFVDRGSWSTEIALLlYAYKWLRPNGFFLNRGNHEtddmnrvyGFEGECKAKYN-----E 300
                  79*****.....*************9999************************99*****9************9999999999999999988.....6 PP

                  HHHEHHHCEEETSEEEEEETTEEEEEEEESECEEE.THHHHHHHHHHHSCHHHHCC.....HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHH CS
  Metallophos  93 epwrsdaevfnnlplaslgsgslkvlllhGgspel.lvsldklgslnleleapepg.....dewlkdlekrekadwvivlgHsplyrgsgylfgdeal 184
                  ++++ ++e f++lpla l++   k+l+lhGg   + +v+ld++++ln++   + ++     + ++ d        +   +g s   rg g +fg++ +
   CCE30040.1 301 RVFKLFSESFSALPLATLVGE--KYLVLHGGLFSDdNVTLDDIRKLNRHNQRQPGQsglmmEMLWTD--------PQDEPGRSASKRGVGLQFGPDIT 388
                  788888***************..********4333699**********9999888888999999999........55555555555************ PP

                  HHHHHHTTESEEEEESSS CS
  Metallophos 185 edllkkygvdlvisGHtH 202
                  +++++k+g+ +vi++H+ 
   CCE30040.1 389 KKFCEKNGLEAVIRSHEV 406
                  ****************85 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.1e-06    0.0018       4      31 ..       8      35 ..       5      38 .. 0.93
   2 !   16.7   0.0     3e-06    0.0048       4      32 ..      42      70 ..      39      72 .. 0.93
   3 !   23.3   0.0   2.3e-08   3.8e-05       1      34 []      73     106 ..      73     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.1e-06
                HHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1  4 lynlGnayfklgkydeAleyyekALeln 31
                l+n Gn  f  g+y  A+++y kA++ln
  CCE30040.1  8 LKNQGNKAFASGDYIGAVDFYTKAIKLN 35
                78*************************9 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 3e-06
                HHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  4 lynlGnayfklgkydeAleyyekALelnP 32
                + n+++a+ k + y  A+++  kALelnP
  CCE30040.1 42 FTNRAQAHIKTEAYGYAIQDAGKALELNP 70
                78*************************** PP

  == domain 3  score: 23.3 bits;  conditional E-value: 2.3e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 +ka+y++G+a     +++eA+ +++++++l+Pnn
  CCE30040.1  73 VKAFYRRGLARTAILRPKEAINDFKECVRLDPNN 106
                 58*******************************8 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.8e-06    0.0045       4      32 ..       8      36 ..       5      38 .. 0.92
   2 !   13.2   0.1   4.4e-05     0.072       4      33 ..      42      71 ..      39      72 .. 0.92
   3 !   18.0   0.0   1.4e-06    0.0022       2      34 .]      74     106 ..      73     106 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.8e-06
       TPR_2  4 lynlGlayyklgdyeeAleafekAleldP 32
                l n+G+ ++++gdy  A++++ kA++l+ 
  CCE30040.1  8 LKNQGNKAFASGDYIGAVDFYTKAIKLND 36
                6799***********************96 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.4e-05
       TPR_2  4 lynlGlayyklgdyeeAleafekAleldPn 33
                  n+++a++k   y  A+++  kAlel+P+
  CCE30040.1 42 FTNRAQAHIKTEAYGYAIQDAGKALELNPG 71
                569**************************6 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 1.4e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +a y++Gla  +  +++eA+++f+++++ldPnn
  CCE30040.1  74 KAFYRRGLARTAILRPKEAINDFKECVRLDPNN 106
                 799*****************************8 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.1e-07    0.0015       1      40 [.      12      51 ..      12      53 .. 0.94
   2 !    6.2   0.0    0.0052       8.5      13      37 ..      58      82 ..      54      84 .. 0.86
   3 !   11.2   0.0   0.00014      0.23      12      34 ..      91     113 ..      90     113 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.1e-07
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40
                G+  ++ G+y +A+  Y kA+kl+ + a+++ n+++a+ k
  CCE30040.1 12 GNKAFASGDYIGAVDFYTKAIKLNDKEATFFTNRAQAHIK 51
                88889********************************965 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0052
      TPR_11 13 AieaYkkAlkldPdnaeayynLGla 37
                Ai++  kAl+l+P  + a+y +Gla
  CCE30040.1 58 AIQDAGKALELNPGMVKAFYRRGLA 82
                5555579****************98 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00014
      TPR_11  12 eAieaYkkAlkldPdnaeayynL 34 
                 eAi+++k+ ++ldP+n +a ++L
  CCE30040.1  91 EAINDFKECVRLDPNNKDARLKL 113
                 9******************9987 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0039       6.3      13      32 ..      17      36 ..      12      38 .. 0.89
   2 !    6.4   0.0    0.0077        12       4      32 ..      42      70 ..      39      71 .. 0.92
   3 !   11.8   0.0   0.00014      0.22       3      34 .]      75     106 ..      73     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0039
                HTT-HHHHHHHHHHHHHHHH CS
       TPR_8 13 klgdyeeAkeyyekaleldp 32
                  gdy  A+ +y ka++l+ 
  CCE30040.1 17 ASGDYIGAVDFYTKAIKLND 36
                5799**************96 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0077
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8  4 yynlgsiylklgdyeeAkeyyekaleldp 32
                  n +++++k++ y  A++   kalel+p
  CCE30040.1 42 FTNRAQAHIKTEAYGYAIQDAGKALELNP 70
                6799************************9 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 a y+ g++     + +eA+  ++++++ldp+n
  CCE30040.1  75 AFYRRGLARTAILRPKEAINDFKECVRLDPNN 106
                 6677777777777899**************97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00092       1.5       1      39 [.      15      53 ..      15      60 .. 0.92
   2 ?    2.0   0.0      0.18     3e+02       9      34 ..      57      84 ..      51      87 .. 0.81
   3 !    7.4   0.0    0.0038       6.2       7      34 ..      89     116 ..      88     118 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00092
      TPR_19  1 llaegdyaeAlalleqalqedpknaearllLAeallalg 39
                ++a+gdy  A++++++a++ + k a    + A+a++++ 
  CCE30040.1 15 AFASGDYIGAVDFYTKAIKLNDKEATFFTNRAQAHIKTE 53
                5899********************************986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.18
      TPR_19  9 eAlalleqalqedpknaearl..lLAea 34
                 A++   +al+ +p++  a +  +LA+ 
  CCE30040.1 57 YAIQDAGKALELNPGMVKAFYrrGLART 84
                57888899***********997777876 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0038
      TPR_19   7 yaeAlalleqalqedpknaearllLAea 34 
                 + eA++ +++    dp+n +arl L e+
  CCE30040.1  89 PKEAINDFKECVRLDPNNKDARLKLEEC 116
                 789********************88555 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   5.7e-07   0.00093       4      67 ..      48     111 ..      44     114 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.7e-07
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaea 67 
                 ++i  e +  a++ +   l l+P  +   + RGl++    ++++A++d+  +++l+p++ da++
  CCE30040.1  48 AHIKTEAYGYAIQDAGKALELNPGMVKAFYRRGLARTAILRPKEAINDFKECVRLDPNNKDARL 111
                 688889999999999999****************************************999985 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1     0.003       4.9       1      24 [.      27      50 ..      27      60 .. 0.88
   2 ?    1.5   0.0       0.3   4.9e+02       4      22 ..      64      82 ..      62      93 .. 0.84
   3 ?    5.2   0.0     0.019        32       2      18 ..      96     112 ..      95     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.003
      TPR_17  1 lylkaleldPnnadaynnLAelll 24
                +y+ka++l+ + a +++n+A+++ 
  CCE30040.1 27 FYTKAIKLNDKEATFFTNRAQAHI 50
                69******************9975 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.3
      TPR_17  4 kaleldPnnadaynnLAel 22
                kalel+P  ++a++ ++ +
  CCE30040.1 64 KALELNPGMVKAFYRRGLA 82
                8******999999999876 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.019
      TPR_17   2 ylkaleldPnnadaynn 18 
                 ++++++ldPnn da   
  CCE30040.1  96 FKECVRLDPNNKDARLK 112
                 799********999866 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.033        54      12      43 ..      16      47 ..      13      48 .. 0.89
   2 !    8.1   0.0    0.0033       5.3       3      41 ..      75     113 ..      71     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.033
      TPR_14 12 lalGdpdeAiallrralalaPddaeawlllaq 43
                +a+Gd+ +A++ + +a++l+ ++a++ +  aq
  CCE30040.1 16 FASGDYIGAVDFYTKAIKLNDKEATFFTNRAQ 47
                689*****************999998887776 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0033
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 a ++++ a  a  +p+eAi+ ++++++l+P++ +a+l l
  CCE30040.1  75 AFYRRGLARTAILRPKEAINDFKECVRLDPNNKDARLKL 113
                 556666666666689*******************99876 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0039       6.3     142     178 ..      34      71 ..      24      78 .. 0.87
   2 ?    3.8   0.0     0.017        27     154     184 ..      81     111 ..      73     113 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0039
      TPR_15 142 ae.qsaafllaraelyrqegqtdaAlrdyreAlalapd 178
                 ++ ++a+f+  ra+++ ++ +   A++d+ +Al+l+p+
  CCE30040.1  34 LNdKEATFFTNRAQAHIKTEAYGYAIQDAGKALELNPG 71 
                 444899******************************98 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.017
      TPR_15 154 elyrqegqtdaAlrdyreAlalapdsselra 184
                  + ++  ++++A++d++e ++l+p+++++r 
  CCE30040.1  81 LARTAILRPKEAINDFKECVRLDPNNKDARL 111
                 555555689******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3367.54
//
Query:       CCE30041.1  [L=446]
Description: uncharacterized protein CPUR_03889 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.5e-113  380.8   3.8   2.3e-113  380.2   3.8    1.3  1  Es2         Nuclear protein Es2
  ------ inclusion threshold ------
      0.039   13.7   0.1       0.27   11.1   0.0    2.3  2  SNN_linker  Stannin unstructured linker


Domain annotation for each model (and alignments):
>> Es2  Nuclear protein Es2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.2   3.8  2.5e-117  2.3e-113       1     431 []      35     406 ..      35     406 .. 0.87

  Alignments for each domain:
  == domain 1  score: 380.2 bits;  conditional E-value: 2.5e-117
         Es2   1 pqkvLdEdeYtdaLskIIaRDFFPgLlelraqneyLdAleskDkewireaqrrltevmakkrtptsrgrrrrkksatsatplaraaeTPlsawggdTPa 99 
                 p+kvLdEd Yt+a+s+IIaRDFFPgLle++ q+eyLdA+eskD +wi++a+ rl++vm    tp++++++    s+ ++t+  ++++TP++ + gdTP+
  CCE30041.1  35 PKKVLDEDYYTEAISHIIARDFFPGLLETQIQQEYLDAIESKDAAWISSAGLRLRTVM----TPGRNTKH----SSARFTA--DGGRTPTT-FVGDTPS 122
                 789*******************************************************....99776663....2334555..55******.889***9 PP

         Es2 100 svaseeleteseetaaesaseeeskkavdenlsLdaFqskYTSEDNeSFnklldkqnekrrekyawlwegekiaskrqiaqrereakllekekrlaiea 198
                 s+a        +           sk++ d+++sL++Fq+ YTSEDNeSF++l+dkqn+k+++kyawlw+g+k ask+ i+q+e+ +kl      +++ +
  CCE30041.1 123 SIAP-------TVV--------TSKPRLDTSMSLSQFQATYTSEDNESFYRLVDKQNQKKADKYAWLWRGNKLASKQMIKQKEVSDKLSL---TQSLVD 203
                 8877.......222........2289*******************************************************997766666...456789 PP

         Es2 199 dgsktselaaepseddrpakpdtwkykarNsLMFkPdsvedaleteaekaeaasrakpkeinyantRleekskeseakeeeasevpaspslsairaaia 297
                 dg ++++la++++  drpa+pd+w++ ++NsLMF+P++ +d + t a++ae+asr++p++i yantR          ++ +a++ p+sp++sa+++aia
  CCE30041.1 204 DGFERKNLAIKDR-HDRPARPDAWDAAPQNSLMFQPQGLDDGVVTIAQRAEEASRMAPRSIDYANTRA---------PQLNAPRRPPSPTMSAVKDAIA 292
                 ****996555555.88****************************************************.........44457788************** PP

         Es2 298 grprkadseag.yagsetprvnGYafVddePspepgsaeeeaelkllsplmtwgeidatPlrldsedtpsgnpFkipeaskREelahrlvekvakkkr. 394
                 grpr++d++++   g+etprvnGY+fVdde +             ++        ++ tPlr+d +  ++ npFk+++++kRE l++r+v++++k+++ 
  CCE30041.1 293 GRPRQCDQDSSiVGGGETPRVNGYSFVDDEDD-------------DDG-------AQITPLRIDLGPGDAHNPFKLQDQRKRELLHERMVDRISKSNKe 371
                 ********9999****************6666.............122.......2346666666668899**********************888773 PP

         Es2 395 sekaasskktsgaatPr..ssplaksrsaasLtPAAqrL 431
                 s++++ ++k+++ ++P+  ssp    r +++LtPAAqrL
  CCE30041.1 372 SARTGLTGKAATPQVPKfpSSP----RVSGDLTPAAQRL 406
                 4455556666655666688888....679*********8 PP

>> SNN_linker  Stannin unstructured linker
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.17   1.5e+03      11      16 ..     150     155 ..     144     156 .. 0.87
   2 ?   11.1   0.0     3e-05      0.27      10      23 ..     297     310 ..     294     311 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.17
  SNN_linker  11 sEDEES 16 
                 sED ES
  CCE30041.1 150 SEDNES 155
                 9****9 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 3e-05
  SNN_linker  10 QsEDEESIVGdGET 23 
                 Q+    SIVG GET
  CCE30041.1 297 QCDQDSSIVGGGET 310
                 9************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3554.86
//
Query:       CCE30042.1  [L=742]
Description: probable abc1 protein precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-32  109.8   0.0    1.5e-31  109.0   0.0    1.4  1  ABC1      ABC1 family
  ------ inclusion threshold ------
          3    7.5   6.1         21    4.8   0.4    3.1  4  DUF2937   Protein of unknown function (DUF2937)
        6.3    7.0  13.0        1.5    9.0   4.2    2.7  2  MAGI_u5   Unstructured region on MAGI


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.0   2.6e-35   1.5e-31       2     113 ..     391     501 ..     390     508 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 2.6e-35
        ABC1   2 elgkkleeiFaefdeePiAaASiaqVhrAklk.sgeeVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdefskslleEldferEAkn 99 
                 +lg++++++F+efde+PiAaASi+qVh+A+l+ +g++VavK+q pgv+++i+sDl++l +l+++++ ++k+l   l++++d+++ +l +E+d+erEA+ 
  CCE30042.1 391 NLGDNWRDLFSEFDETPIAAASIGQVHKATLSsNGKKVAVKIQFPGVADSINSDLDNLGVLLNATQLLPKGLY--LNKTIDNARLELGWECDYEREAQC 487
                 799*****************************88***************************************..************************ PP

        ABC1 100 aekfrenfaklkev 113
                 a + r+ ++ +++v
  CCE30042.1 488 ALRYRSLLQGDQDV 501
                 *******9999974 PP

>> DUF2937  Protein of unknown function (DUF2937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.4    0.0035        21      23      39 ..     118     134 ..     117     138 .. 0.88
   2 ?   -1.8   0.0      0.36   2.2e+03      75     103 ..     328     356 ..     319     375 .. 0.74
   3 ?   -3.7   0.0       1.5   8.7e+03      83     126 ..     527     570 ..     524     575 .. 0.72
   4 ?    4.2   0.0    0.0053        31      22      64 ..     591     633 ..     588     639 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0035
     DUF2937  23 fadqYqqrLeghldelk 39 
                 f + YqqrLe+++ +++
  CCE30042.1 118 FNQAYQQRLEAQRLAAE 134
                 89**********99886 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.36
     DUF2937  75 daesiqalverlerLeqelqalqqaslle 103
                  +++++++v++l+r++ +  +l q+  ++
  CCE30042.1 328 SGKNMERIVAKLSRMRGAALKLGQMMSFQ 356
                 68999999999999999999998854444 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 1.5
     DUF2937  83 verlerLeqelqalqqasllerlvvllraadaeileetlenfsp 126
                 v+r++ L+qe++   + ++l+  +  ++++++   +  ++nf +
  CCE30042.1 527 VTRVKSLTQEQRDWIGTQILRLCLREMTEFNFMQTDPNWTNFLY 570
                 78999999999988887777777777777777766666777665 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.0053
     DUF2937  22 efadqYqqrLeghldelkrqlagfqatAkrffkgdlealiahy 64 
                 +f+ qY q Le++ ++ + +++++++        + + +++ +
  CCE30042.1 591 AFVRQYVQLLEAASRSDRASIKTLSESLGYLTGHESKTMLDAH 633
                 599*************999999998765544444555555555 PP

>> MAGI_u5  Unstructured region on MAGI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.2   0.00025       1.5      23      69 ..      60     106 ..      38     119 .. 0.72
   2 ?    2.1   1.5     0.032   1.9e+02      40      80 ..     204     247 ..     194     253 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00025
     MAGI_u5  23 ssqhsvsshrslhtdsPshsslalplsesvappppsqplpslpiqdp 69 
                 s  hs   + ++  d+ + +s ++p++ + +pp psqp+p+ p + +
  CCE30042.1  60 SPEHSAKHNGAAASDAVAGASRTTPAASTPSPPRPSQPIPAEPENVQ 106
                 5566666666677777777888888888888888******9997633 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.032
     MAGI_u5  40 shsslalplsesvappppsqpl..pslpiq.dpadgtiqkkPDP 80 
                   s++  p+ esvap   sqp+  p         dg i  k   
  CCE30042.1 204 ERSAEFQPARESVAPADASQPVkaPDSSSMpASNDGDIESKSQS 247
                 3466778999*****99****95432222234556666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 5815.88
//
Query:       CCE30043.1  [L=297]
Description: related to PITSLRE protein kinase isoforms [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-57  192.5  29.4    8.3e-57  191.8  29.4    1.4  1  RRP36     rRNA biogenesis protein RRP36


Domain annotation for each model (and alignments):
>> RRP36  rRNA biogenesis protein RRP36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.8  29.4   4.6e-61   8.3e-57       1     166 []     125     288 ..     125     288 .. 0.99

  Alignments for each domain:
  == domain 1  score: 191.8 bits;  conditional E-value: 4.6e-61
       RRP36   1 rkskhaPtevsskkpvsrkrevvkvkkkksrDPRFdslsgeldedlfeknYaFLdeyrekEleelkkelkkekdkeeekeelkrelqrlesrekerekk 99 
                 r+skhaP+e++sk+pv+r+re+++ +++k+rDPRFd+l+g+lde++++k+YaFLdeyre+E+++l++++kk+k+ + +ke lkr+l+++esr+k+++kk
  CCE30043.1 125 RSSKHAPQEQTSKRPVKRLREIIPDPRRKARDPRFDPLVGKLDETRARKAYAFLDEYRETEMADLRAQIKKSKN-PLDKEALKRQLMSMESRKKAQKKK 222
                 89*********************9999999********************************************.************************ PP

       RRP36 100 ererevlkelkkeekekvkegkkpfflkksekkklllkekfeelkkkkklekaierkrkKnasKekk 166
                 ++e+++l+e++ +eke+v +gk+pf+lk+se+kk+ll+e+fe++ +k+++++aierkrkK+++Kekk
  CCE30043.1 223 DEEQTLLAEHRAKEKELVAQGKTPFYLKRSEQKKQLLVERFEKM-SKSQVDRAIERKRKKVVGKEKK 288
                 ********************************************.9********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2191  (0.122204); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2287.38
//
Query:       CCE30044.1  [L=355]
Description: uncharacterized protein CPUR_03892 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-21   76.1   0.0    3.5e-21   75.6   0.0    1.2  1  NIF       NLI interacting factor-like phosphatase
  ------ inclusion threshold ------
          7    8.3  16.6        2.4    9.7  13.5    1.8  2  DUF3729   Protein of unknown function (DUF3729)


Domain annotation for each model (and alignments):
>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   3.9e-25   3.5e-21       2     152 ..     175     342 ..     174     346 .. 0.84

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 3.9e-25
         NIF   2 tLVLDLDetLvhsklekskklkvegekvevsvlkRpgldefLkelsklyevvifTasseeyaeavidil.dpekkl.lshrlyresc.v..kkkg.... 91 
                 ++VLDL++tL+ +            ++ + ++  Rp+++ fL+++ + y v i+++++++++++++ +l  p +++ +   + r++     + ++    
  CCE30044.1 175 LVVLDLNGTLLFRP----------SRQNPTHFVQRPHAKTFLQYCLETYHVAIWSSAQPKNVKSMVTQLlTPAQRSqCVVIWARDRLgLsvT-DYgerv 262
                 79*********888..........56668*************************************999855555437777*****954432.335788 PP

         NIF  92 eyvKdLsll................gr.dlsrvvivDdspdsfelqpengipiksffs..dkkDneLlkllpllkelakv 152
                 +++K Ls l                gr d+ ++v+vDds+++ +++p+n++ i++f++   +  n L ++  +l++l ++
  CCE30044.1 263 QVYKRLSGLwsdpevmashpnavegGRwDQTNTVLVDDSTEKGRSEPYNILAIPEFAGlqAEPANVLPQVHDYLNHLCYQ 342
                 999*****97777777777766665559****************************766588888999999999988755 PP

>> DUF3729  Protein of unknown function (DUF3729)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  13.5   0.00027       2.4      13     108 ..      63     174 ..      61     178 .. 0.85
   2 ?   -2.8   0.0         2   1.8e+04      55      67 ..     214     226 ..     187     241 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00027
     DUF3729  13 stLytrtwStsgfss..dfSppeaaaiaeappvglprp.vstppsasdvlvlpppseeaalesdlvpsvakpasppsplapkaparkvpappp...... 102
                 s+L+t t S s +s     Sp e + ++++pp+ l+   +s  p++++  + pp++e +a +++++++v++ a+p+   +p+ +  +vp p+p      
  CCE30044.1  63 SLLTTTTSSSSPISGagTASPRETMRLSSTPPTTLDALaDSFIPATTTSSKSPPRKEVQARSTSPTDKVTSTARPKPRRKPSDSSGGVPCPSPiylkqa 161
                 899******99998622689999**9**99999999998999999**********************************************98666655 PP

     DUF3729 103 .......arrrrL 108
                        +  rr+
  CCE30044.1 162 dfppttlSSPRRI 174
                 5555555555555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2
     DUF3729  55 asdvlvlpppsee 67 
                   +++  + p++ 
  CCE30044.1 214 HVAIWSSAQPKNV 226
                 4444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2867.04
//
Query:       CCE30045.1  [L=411]
Description: probable translation elongation factor eEF-1,gamma chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-42  142.0   0.1    1.4e-41  140.9   0.1    1.6  1  EF1G      Elongation factor 1 gamma, conserved domain
    9.4e-16   57.8   0.1    2.2e-15   56.7   0.1    1.7  1  GST_C     Glutathione S-transferase, C-terminal domain
      2e-10   40.5   0.0      2e-09   37.3   0.0    2.3  2  GST_C_2   Glutathione S-transferase, C-terminal domain
    1.8e-09   37.8   0.0    5.1e-09   36.4   0.0    1.8  1  GST_N     Glutathione S-transferase, N-terminal domain
    4.7e-07   29.9   0.1    2.3e-06   27.7   0.0    2.1  2  GST_C_3   Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.025   15.0   0.0    1.6  1  GST_N_3   Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> EF1G  Elongation factor 1 gamma, conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.9   0.1   4.6e-45   1.4e-41       1     107 []     250     355 ..     250     355 .. 0.99

  Alignments for each domain:
  == domain 1  score: 140.9 bits;  conditional E-value: 4.6e-45
        EF1G   1 kakdplaalpkskfvldewKrkYsnedteekalkyfwenfdkeeyslwkveYkyneeltktfmssnliggffqrleklrkyaFgsvvvfgennnseisG 99 
                 k+k+p++ lpk k+ ld+wKr++sn+++   alk+fwen+  e+ys+w+v+Ykyn+elt tfms+nliggf +rle +rk  Fgs++v+ge+n s i+G
  CCE30045.1 250 KPKHPCDLLPKPKMALDDWKRQFSNSES-ADALKWFWENVSFEDYSIWRVDYKYNDELTLTFMSNNLIGGFNTRLEGSRKFLFGSASVYGETNASVIQG 347
                 79*************************8.99******************************************************************** PP

        EF1G 100 vwlfrGqe 107
                 ++++rGqe
  CCE30045.1 348 AFVIRGQE 355
                 ******97 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.1   7.2e-19   2.2e-15       5      93 .]      91     196 ..      71     196 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 7.2e-19
                 HHHHHHHHHSTTH................HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT.TTTSHHHHHHH CS
       GST_C   5 isqilllfyvkae................ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafg.qekfpnlkawl 86 
                 +s +++++y+++e                  +++ v+ea++ v ++++++ee+l  +++lvG+++tlAD+  +p+ln+ +++ ++ + + + pn+++w+
  CCE30045.1  91 ASILKWMSYFNSEivsqfgnwfqpllgkqPYNKKNVEEASKTVQKAIKVVEEHLLHNTFLVGERMTLADLFCAPLLNRGFQYFFDKEwRNQNPNVSRWY 189
                 66677888888888888888888888888555559******************************************999999999999********** PP

                 HHHHTSH CS
       GST_C  87 erimarp 93 
                 e+++++p
  CCE30045.1 190 ETVVNQP 196
                 *****98 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   6.8e-13     2e-09       4      68 ..     126     190 ..     123     191 .. 0.96
   2 ?    0.1   0.0      0.28   8.3e+02      18      31 ..     319     333 ..     313     334 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 6.8e-13
                 HCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHHH CS
     GST_C_2   4 veraleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdireaypnlraWle 68 
                 ve+a +++++a++++e+hL + +fl G++ tlaD + ap l r  +++ + ++r + pn+ +W+e
  CCE30045.1 126 VEEASKTVQKAIKVVEEHLLHNTFLVGERMTLADLFCAPLLNRGFQYFFDKEWRNQNPNVSRWYE 190
                 6888899*********************************************************8 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.28
                 CTTT---SS..CTTC CS
     GST_C_2  18 leahLadsp.flfGd 31 
                 ++++L++s+ flfG+
  CCE30045.1 319 FNTRLEGSRkFLFGS 333
                 6899**********7 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   1.7e-12   5.1e-09       3      75 ..       4      74 ..       2      75 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.7e-12
                EEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET.TEEEESHHHHHHHHH CS
       GST_N  3 ltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn.gkkltESraIleYia 75
                +tly+  ++pr+ +i+++++a ++e ++ +++f    ++++e+lk n lgk+Pa++++ g+ l E  a + Y+ 
  CCE30045.1  4 GTLYTTSDNPRSVAIKAVAKANDLELKISEVEF---GNADAEHLKANGLGKIPAFVGEdGFALSECIAVAIYVT 74
                69******************************9...55689***************************999985 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.6   1.8e+03       7      41 ..      67     105 ..      63     125 .. 0.67
   2 !   27.7   0.0   7.6e-10   2.3e-06      13      90 ..     118     196 ..     102     197 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.6
                 HHCCCC..SHCHHH....HHHHHHHHHHHHCHHHHHHHHHH CS
     GST_C_3   7 iaklly..dqkeea....ekkkefleerlpkflkyfekvlk 41 
                 ia+++y  +q+e++    + k+++    + k+++yf+  + 
  CCE30045.1  67 IAVAIYvtSQNEKTtllgKTKQDYA--SILKWMSYFNSEIV 105
                 5556666555555578766666665..67788888876554 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 7.6e-10
                 SHCHHHHHHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHH.HHHHH...TCCCC-HHHHHHHHHHHTSH CS
     GST_C_3  13 dqkeeaekkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvld.gleea...ealkkfpklkalyervearp 90 
                 +q+++ +k  e   ++++k +k++e++l   ++++lvg+++T+ADl++  +l+ g++++   e+ ++ p++ ++ye v ++p
  CCE30045.1 118 KQPYN-KKNVEEASKTVQKAIKVVEEHLL--HNTFLVGERMTLADLFCAPLLNrGFQYFfdkEWRNQNPNVSRWYETVVNQP 196
                 44544.777888899**************..899****************987356777854444999**********9988 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   8.2e-06     0.025       8      70 ..      13      76 ..       6      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.2e-06
                HHHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-TT--SSEEE.TTS-EEESHHHHHHHHHHH CS
     GST_N_3  8 pyarrvrlaLnekglpvevvevtpgehdeellaknplgkvPvLe.ddgealtdSlaIidyLeel 70
                p +  ++ + +  +l+ ++ ev+ g+ d+e l+ n+lgk+P+++  dg al +  a++ y+ ++
  CCE30045.1 13 PRSVAIKAVAKANDLELKISEVEFGNADAEHLKANGLGKIPAFVgEDGFALSECIAVAIYVTSQ 76
                5555566778889999***************************9899****9988888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       865  (0.0482459); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3093.99
//
Query:       CCE30046.1  [L=307]
Description: probable MRPS9-mitochondrial ribosomal protein,small subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-39  135.0   0.4    2.7e-39  134.4   0.4    1.3  1  Ribosomal_S9  Ribosomal protein S9/S16


Domain annotation for each model (and alignments):
>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.4   1.5e-43   2.7e-39       1     121 []     187     307 .]     187     307 .] 0.99

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 1.5e-43
                   EECTTEEEEEEEEESSSEEEETTEECCHHSTTSCHHHHHCHHHHHTTTSSSEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTCCCTS- CS
  Ribosomal_S9   1 GrrKesvArvwikegkgkilvngksleeYfkeeaarekvleplkltgllgkfdvfvkvkgGGlsgqaeAirlgiaraLvalekeekkeLkkaglltr 97 
                   GrrK+s+Ar+ ++eg+g++lvngk l+e f + ++re+++ +l++t+ l+k++  + v+gGG++gqaeAi+l+ia+aLva+e++ k+ L+kag++tr
    CCE30046.1 187 GRRKSSTARAFLVEGTGEVLVNGKLLSEAFGRVHDRESAVWALTATQRLDKYNAWILVEGGGTTGQAEAITLAIAKALVAHEPALKTPLRKAGCITR 283
                   9*****************************99***************************************************88************ PP

                   B--------TTSSCTTB----S-- CS
  Ribosomal_S9  98 DpRvvErkKtgkkkARkkyqwskR 121
                   DpR vErkK  + kARk++ w+kR
    CCE30046.1 284 DPRAVERKKHDHLKARKRPAWVKR 307
                   ***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2244.13
//
Query:       CCE30047.1  [L=934]
Description: uncharacterized protein CPUR_03895 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-69  233.2   0.0      5e-69  232.6   0.0    1.2  1  ATG13     Autophagy-related protein 13


Domain annotation for each model (and alignments):
>> ATG13  Autophagy-related protein 13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.6   0.0   2.8e-73     5e-69       1     240 []      77     316 ..      77     316 .. 0.95

  Alignments for each domain:
  == domain 1  score: 232.6 bits;  conditional E-value: 2.8e-73
                 HHHHHHHHHHHHHHTT--.---------S--B-GGGEEB---HHHHHHHCCCCCS-TCTTT..--EEEEEEEETTT--TT-EEEEE-TTS-EEEEE... CS
       ATG13   1 IqnfftKaaliilqsrlt.ksssesssskklnkWFnlelddtdlfkeelrlWksvssllen.pppliievyLdlsdlssnqvlvlkdesgkrwdvd... 94 
                 +qnff+Kaa++i++sr++ k++++++++ k+nkWF+le+++ d+f+++l++Wk+++sl en ppplii+++Ld+s l+++q+lv+ d++gkrwdv+   
  CCE30047.1  77 VQNFFSKAAVLIIESRVKvKPARTARGQPKTNKWFQLETNELDNFRDDLKIWKTCGSL-ENrPPPLIIDIFLDTSGLKESQSLVILDDDGKRWDVMeql 174
                 79****************7578999*******************************55.55599*********************************** PP

                 ..............ECCC-SEEEEEEEEEEEE-S-------------HHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHCHTT------EEEEEEECTTS CS
       ATG13  95 ........ssdsekkgskkteivLErWlleldstsssetsdeaselelptvyKksivlfRsLytllrlLPayklsrklaksknsepalkigcRildgsk 185
                         +s ++ + s++ e++LE+W++ l+    s t d++++l  p++yKk+iv+fRsL+++++lLP++k++++ +  k+s+pal  +cRi  ++ 
  CCE30047.1 175 nssdssssGSYHAPPPSRNAEVLLEQWRIDLKTAGGSPTGDFGPIL--PAIYKKAIVFFRSLFIITKLLPTWKFASQ-SPAKQSHPALVPKCRIRLAE- 269
                 ****999878888999********************99999****9..*****************************.77889************999. PP

                 ----TTSB-TT---SCCCGT-----TTEEEEE---EEETTEEEEEEEEEES--EC CS
       ATG13 186 pisskgeiglskpliasesnaenseehleqykftpietplGrlslsvtYRndcdF 240
                    + g + l++p+       + ++e +++y f+++e+p+G ls++vtYRndc+F
  CCE30047.1 270 -PGRMGPDLLKQPI-------DGRREPVTEYVFGDLEVPVGCLSTTVTYRNDCSF 316
                 .99999********.......457889**************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 6864.02
//
Query:       CCE30048.1  [L=626]
Description: related to protein HSE1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-37  127.3   0.2    8.1e-37  126.2   0.2    1.6  1  VHS       VHS domain
    1.3e-15   56.7   0.0    2.8e-15   55.6   0.0    1.6  1  SH3_1     SH3 domain
    2.3e-15   56.2   0.1    6.8e-15   54.7   0.1    1.9  1  SH3_9     Variant SH3 domain
    1.8e-12   46.7   0.0    4.4e-12   45.5   0.0    1.7  1  SH3_2     Variant SH3 domain
    6.5e-11   42.4   1.2    1.7e-10   41.0   1.2    1.8  1  GAT       GAT domain
     0.0025   17.6   4.0      0.006   16.4   4.0    1.7  1  UIM       Ubiquitin interaction motif
  ------ inclusion threshold ------
       0.16   12.1   0.3       0.28   11.3   0.3    1.4  1  zf-CCHC   Zinc knuckle


Domain annotation for each model (and alignments):
>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   0.2   3.2e-40   8.1e-37       6     139 ..       9     140 ..       4     142 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.2 bits;  conditional E-value: 3.2e-40
                 HHHHHHHHHT-TT-SS--HHHHHHHHHHHHCSTCHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTTTCHCS CS
         VHS   6 slekliekATdeslreedlslileicDlinekeagpkeavrlikkkinsknphvallaLklldalvkNcGskfhleiaskeflnelvklilekknskla 104
                 +++ ++ kATde l++ed+++i+e+cD +  +  gpkea++++ k++ ++n++v+l++L+l  a+ +NcG+++h ei+s+ f++ l+kl+  ++ +++ 
  CCE30048.1   9 PFDDVVAKATDENLTSEDWAAIIEVCDKVTGDASGPKEAAQSMIKRLAHRNANVQLYTLELAHAVCQNCGKPMHREISSRAFTDALLKLANDRNTHNQ- 106
                 68899***********************************************************************************8888888886. PP

                 .HHHHHHHHHHHHHHHTTT-TTGHHHHHHHHHHHH CS
         VHS 105 kvkkkvlelleeWadafknkpelkkisdvykllkr 139
                  vk k+l+ ++eW+d+f+n+ +l  + d+y++lk 
  CCE30048.1 107 -VKAKILQKMKEWTDMFSNDADLGIMGDAYQRLKH 140
                 .********************************96 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   1.1e-18   2.8e-15       1      47 [.     234     278 ..     234     279 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 1.1e-18
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEE CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliP 47 
                 +AlYD+ ++e++EL fk+GDvi vle + ++Ww+g lkg   +G++P
  CCE30048.1 234 RALYDFVPSEAGELEFKRGDVIAVLESVYKDWWRGSLKG--NTGIFP 278
                 7*************************************5..6***** PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.1   2.7e-18   6.8e-15       1      49 []     235     283 ..     235     283 .. 0.99

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 2.7e-18
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsltGrtGlvPanyve 49 
                 Aly+++p e+ eL++ rGDvi v+e    +W++gsl+G+tG +P nyve
  CCE30048.1 235 ALYDFVPSEAGELEFKRGDVIAVLESVYKDWWRGSLKGNTGIFPLNYVE 283
                 8***********************************************7 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   1.7e-15   4.4e-12       1      56 [.     232     284 ..     232     285 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 1.7e-15
                 EEEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEECCCEEEEEGCGEEE CS
       SH3_2   1 yvraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegevgGrvGlfPsslvee 56 
                 +vra+ d+v++  +eL+fk+Gdvi+vl   ++   +ww+g+ +G  G+fP ++ve+
  CCE30048.1 232 RVRALYDFVPSEAGELEFKRGDVIAVL---ESVYKDWWRGSLKGNTGIFPLNYVEK 284
                 68*************************...77777*******************97 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   1.2   6.7e-14   1.7e-10       2      76 ..     308     379 ..     307     380 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 6.7e-14
         GAT   2 nnaklLsemLsstepdeellenellkeLyetckamqpriqklieetadeedllaelLqlNDeLnnvlerYerlkk 76 
                 +n++ L  +Ls+ +    +++ne + +Ly++  a++p+++klie++++++d   ++ qlN+++ ++ + Ye+l++
  CCE30048.1 308 KNVEKLLTLLSASNVAPRDEDNEEISKLYHQTLAIRPKLIKLIEKYSQKKD---DFTQLNEKFIKARRDYEALLE 379
                 69*********9994446889*****************************8...*****************9986 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   4.0   2.3e-06     0.006       2      16 ..     164     178 ..     163     178 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.3e-06
         UIM   2 EdedLqrAlalSlqE 16 
                 Ede+Lq+Al lSlqE
  CCE30048.1 164 EDEELQMALKLSLQE 178
                 9*************9 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00011      0.28       2      12 ..      73      83 ..      72      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
                CTSSSSSSSST CS
     zf-CCHC  2 kCynCGepGHi 12
                +C nCG+p+H+
  CCE30048.1 73 VCQNCGKPMHR 83
                6*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1273  (0.0710023); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.39
# Mc/sec: 4839.40
//
Query:       CCE30049.1  [L=1135]
Description: related to RIS1-similarity to RAD5 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-65  219.5   1.4    2.4e-63  214.0   1.4    3.0  1  SNF2_N      SNF2 family N-terminal domain
    2.4e-17   63.3   0.0    7.8e-17   61.6   0.0    2.0  2  Helicase_C  Helicase conserved C-terminal domain
    8.4e-06   25.9   0.0    2.8e-05   24.2   0.0    1.9  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.0   1.4     4e-67   2.4e-63      54     350 .]     316     626 ..     295     626 .. 0.79

  Alignments for each domain:
  == domain 1  score: 214.0 bits;  conditional E-value: 4e-67
                 TT--EEE---TTS--HHHHHHHHH...HHTTTS---........S-EEEE--HHHHHHHHHHHHHH-TTS-.EEE--SSHHHH---------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  54 svrGGiLaDemGLGKTvqvlalilaqrakeekdkek.krkdtlagptLivvPaslldqWeneierhvsssa.lrvlvyggqkkmkkkntkvapkllady 150
                   +GG+LaD+mGLGKT+q+++l+l++r+ e+  +   k+ +++ + tL+v+P sl++qWe+ei+  v+ss+ l+vlv++g +      ++ + k la+y
  CCE30049.1 316 VPKGGLLADDMGLGKTLQSVSLMLTNRKPEKGSPGWkKAFENVVKTTLVVAPLSLIRQWEHEIADKVASSRgLKVLVHHGPQ------RTKDFKELAKY 408
                 558*********************999766655543577899999******************9998776549******964......34467999*** PP

                 -EEEE-HHHHHHHT.............TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHH CS
                 xxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 151 dvvittYdvlsreaelq.......kkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfd 242
                 dvv+ttY++l   +e++         +     ++w+rv+lDE+ht+kn ++k ++a+  L++++rw+l+GTP+qn l dl +L+ fLr++p+++ + ++
  CCE30049.1 409 DVVVTTYHILV--SEFGkadeagkDAKVGCFGLHWWRVILDEAHTIKNRNAKSTKACYALRSEYRWCLSGTPMQNTLDDLQSLVRFLRIRPYDDLKQWK 505
                 **********9..5556679998656667889******************************************************************* PP

                 HHTHHHHH.HHHHHHHHHHHTT-STTEE---GGGT..--.....S---EEEEEEEEE--HHHHHHHH......................HHHHHH-HHH CS
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx..xx.....xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 243 kllqrpie.aqaekgrsrLlqllqrlmlrrakkdv..ek.....nlPpkteeiiflklskverksYn..rllevlrkkalakllkrseaalkssskske 331
                 + +++p +    +  ++rL+++l+ +m rr+k+ +  +        P  + e     +++ erk+      l+ +   +   l  r++ +++   +   
  CCE30049.1 506 EHIDTPLKnGRGHIAIRRLHSVLRCFMKRRTKEILkkDGalnpgGKPSAKGEPSATGFKHTERKIVMvsAKLTPAERRFYDRLEARADRNMEVMMQ--- 601
                 ********334556789******************6522222223466677777888888888876610223333334444444444444443333... PP

                 -......HHHHHHHHHHHHH---XX CS
                 x......xxxxxxxxxxxxxxxxxx RF
      SNF2_N 332 k......ilelllelrqacnhpqlv 350
                 +       + lll+lrq+cnhp+lv
  CCE30049.1 602 NkvsyanAFTLLLRLRQVCNHPKLV 626
                 1344566999************986 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.6   1.6e+04      36      71 ..     383     412 ..     368     415 .. 0.59
   2 !   61.6   0.0   1.3e-20   7.8e-17       2     110 ..     920    1030 ..     919    1031 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.6
                 HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEE CS
  Helicase_C  36 lekkgikvavlhgelpqnereeileqfnkgesdvLi 71 
                  +++g+kv+v+hg     +r + +++    ++dv++
  CCE30049.1 383 ASSRGLKVLVHHG----PQRTKDFKEL--AKYDVVV 412
                 4456888888888....3444444444..3455555 PP

  == domain 2  score: 61.6 bits;  conditional E-value: 1.3e-20
                  HHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C    2 kleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprn 96  
                  k++ + ++l++e++++k ++f++++++l+ v+ +l   g+++++++g+++++ ree+l++ + ++e++ +L + + ++ G++++ ++ Vi++++ +n
  CCE30049.1  920 KIREMSKILQNEAQQHKFIVFSQFTSMLDLVEPFLDADGFEYVRYDGSMKNDAREESLRRLReDDETRiLLCSLKCGSLGLNLTAATRVIIVEPFWN 1016
                  788899999*******************9999999999************************645555477889*********************** PP

                  HHHHHHHHTTSSST CS
  Helicase_C   97 vtsyiqriGRtgRa 110 
                  +    q+i+R++R 
  CCE30049.1 1017 PFVEEQAIDRVHRL 1030
                  *************7 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   4.8e-09   2.8e-05      23     169 ..     316     478 ..     272     480 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4.8e-09
                 TTSEEEEEESTTSTHHHHHHHHHHHH-S................-EEEEESSHHHHHHHHHHGGGGTGG......GEEEESSS-B--.......-SEEE CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierllkkgkee...........kflflvprkslleqtleefkkflseayke..igkkvsgdkkkakekdstnkkilv 108
                   k gl++   G GKTl +++l+   +k +k +           k+ ++v  +sl+ q+++e+++   + +          +++k++  k+  + +++v
  CCE30049.1 316 VPKGGLLADDMGLGKTLQSVSLMLTNRKPEKGSpgwkkafenvvKTTLVVAPLSLIRQWEHEIADKVASSRGLkvLVHHGPQRTKDF--KELAKYDVVV 412
                 56788999999************99888766669**********99999999********999877776654334333333444444..7779****** PP

                 EEHHHHHHTH........HHHTTT-S........EEEEETGGGTTS..TTTHHHHHT---SEEEEEESS- CS
      ResIII 109 ttiqsldadseeeeeeseellrdrfd........viiiDEaHrlgak.kswreilekfkeavllglTATp 169
                 tt++ l ++      + +e+++d++          +i DEaH ++   ++ +++  ++++ ++  l++Tp
  CCE30049.1 413 TTYHILVSEF----GKADEAGKDAKVgcfglhwwRVILDEAHTIKNRnAKSTKACYALRSEYRWCLSGTP 478
                 **********....555566666665666699999********999642344444455556666667776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1104  (0.0615762); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.27s 00:00:01.19 Elapsed: 00:00:00.43
# Mc/sec: 8010.64
//
Query:       CCE30050.1  [L=125]
Description: probable nuclear transport factor 2 (ntf-2) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-31  108.8   0.2    2.7e-31  108.6   0.2    1.0  1  NTF2      Nuclear transport factor 2 (NTF2) domain
  ------ inclusion threshold ------
      0.081   13.3   0.0      0.096   13.1   0.0    1.1  1  DUF4440   Domain of unknown function (DUF4440)


Domain annotation for each model (and alignments):
>> NTF2  Nuclear transport factor 2 (NTF2) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.2     3e-35   2.7e-31       1     119 [.       8     121 ..       8     122 .. 0.96

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 3e-35
                 HHHHHHHHHHHHHHHHGGGGGGGGEEEEEEEEEETTEEEEESHHHHHHHHHHSSCSCEEEEEEEEEEEETSEGGGCEEEEEEEEEEEETTSCCEEEEEE CS
        NTF2   1 vakafvqqYYaaldagdregllalyaadaslltpegsspvkgreaIteffrslpftrielkittvdaqpdeaslstgvlvmvtGelkvddfkkrrkfsq 99 
                 +ak+f+  YY+++d+ dr+gl+ ly +d+s+lt+e   +  g+++It++++ lpf++++++++t+daqp++   ++g+++ vtG+l vd+++++++fsq
  CCE30050.1   8 IAKQFIDFYYNTFDT-DRKGLASLY-RDNSMLTFEST-SSLGTANITAKLTGLPFEKVKHQVSTLDAQPSN--DNGGIIILVTGQLLVDEEQRPMNFSQ 101
                 689************.*********.***********.******************************954..489***************988***** PP

                 EEEEEEETTTEEEEEEEEEE CS
        NTF2 100 tfilapqsnkgyfvlnDifr 119
                 +f l++++ ++yfv nD+f 
  CCE30050.1 102 AFQLSRDGAGQYFVYNDVFK 121
                 ******************96 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.1e-05     0.096      14     101 ..      21     108 ..       6     113 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
                 CT-HHHHHHCEEEEEEEE-TTS-EEEHHHHHHHHHCCHCEEEEEEEEEEEEEEETTEEEEEEEEEEEECCTTEEEEEEEEEEEEEEEE CS
     DUF4440  14 agdaealaallapdavlvgpsgtvldkeellealeagfaagrslelteeevrvlgdlAvvtgrytfegrgdgepvegrgrftsvwrke 101
                   d++ la+l++++ +l+  s + l+++++ ++l+  ++++   ++++++ ++++d +  +  +t +   d+e+ ++++   + + ++
  CCE30050.1  21 DTDRKGLASLYRDNSMLTFESTSSLGTANITAKLTGLPFEKVKHQVSTLDAQPSNDNGGIIILVTGQLLVDEEQRPMNFSQAFQLSRD 108
                 57999******************************999999999**********6633333333444444555555666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1106.81
//
Query:       CCE30051.1  [L=582]
Description: uncharacterized protein CPUR_03899 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.074   12.8   9.8       0.99    9.1   3.3    2.2  2  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
        3.8    7.2   6.5          1    9.0   1.7    2.3  2  FAM176      FAM176 family


Domain annotation for each model (and alignments):
>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.5   0.00034       3.1      87     142 ..     189     250 ..     161     260 .. 0.56
   2 ?    9.1   3.3   0.00011      0.99     114     154 ..     392     432 ..     351     482 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00034
                 ---------------------..-----------------......---------------- CS
  Cwf_Cwc_15  87 eeeeeeeeeeakrrkeelleeareidaddedseeeeeeee......eesdddsdsdsddddd 142
                 e+ e+++++ +krr++++ + + +   d+++s+++++ +       +es  dsds s+ddd+
  CCE30051.1 189 EKLEKRRQKFEKRRRRQTSAREGSSGTDSSASRKDTAPSGltngfpTESAVDSDSWSEDDDE 250
                 22233333333444433333334556666666554444446666654444455444444443 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00011
                 ----------------------------------------- CS
  Cwf_Cwc_15 114 ddedseeeeeeeeeesdddsdsdsdddddedetaeLlrELe 154
                 d+ ++ +++++++++s+d+   dsdd++d+de+a  l  Le
  CCE30051.1 392 DQTSEGARRKKSRRKSNDQAAVDSDDEEDDDEKASALIKLE 432
                 33333333344444555555555555555555555444444 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.11   9.5e+02      57      75 ..     194     212 ..     164     256 .. 0.59
   2 ?    9.0   1.7   0.00011         1      48      99 ..     391     442 ..     385     464 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.11
      FAM176  57 kkkklkeesekasededee 75 
                 +++k +++ +++++  +  
  CCE30051.1 194 RRQKFEKRRRRQTSAREGS 212
                 2222222222222222322 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00011
      FAM176  48 rkdlerlkkkkkklkeesekasededeeeeeeeedsseseaeeelsefertl 99 
                 r+++++ +++kk++++++++a  d+d+ee+++e+ s+  + e++ ++++++l
  CCE30051.1 391 RDQTSEGARRKKSRRKSNDQAAVDSDDEEDDDEKASALIKLEHDDKDSDGKL 442
                 5566677778888888888888888888888888877777666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4165.92
//
Query:       CCE30052.1  [L=1292]
Description: related to PEST phosphatase interacting protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-53  180.5   1.6    5.8e-53  179.9   1.6    1.3  1  Seipin      Putative adipose-regulatory protein (Seipin)
    6.5e-16   58.4   0.1    1.7e-15   57.0   0.1    1.8  1  FCH         Fes/CIP4, and EFC/F-BAR homology domain
    3.4e-09   36.2   0.1    6.9e-09   35.2   0.1    1.5  1  SH3_1       SH3 domain
    5.7e-06   25.9   0.0    4.7e-05   23.0   0.0    2.3  2  SH3_2       Variant SH3 domain
    1.7e-05   24.5   0.1    3.6e-05   23.5   0.1    1.5  1  SH3_9       Variant SH3 domain


Domain annotation for each model (and alignments):
>> Seipin  Putative adipose-regulatory protein (Seipin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.9   1.6   1.6e-56   5.8e-53       2     197 .]     948    1162 ..     947    1162 .. 0.97

  Alignments for each domain:
  == domain 1  score: 179.9 bits;  conditional E-value: 1.6e-56
      Seipin    2 illvlavilyilfyyayvpevilskpvhlqygkltsPyanvslnsdssllkenqkYdvsveLslPeseaNlelGnFmvelellsssgk......... 89  
                  +ll la ++  +f++++vp++++++pv+lqy+++ +Py+ ++l   ++  k +q+Ydvsv+L +P+s++N+e GnFmv+l l+ +  k         
  CCE30052.1  948 TLLTLASMATAMFFQSFVPDQFITTPVFLQYQSGVNPYGIAQL--AYPSPKLHQDYDVSVQLLMPRSPSNKEQGNFMVSLYLVREGVKghrvltngr 1042
                  799****************************************..8888***********************************833358******* PP

      Seipin   90 .............ilanssrpalLpyrsplvrllrtllllpllllglneesqtlrvplaesv.vennenpptsarvevqsraapelqiysAklrfea 172 
                               +l++s+rpal+py++p++++++++l+l +++l + ++ ++++++lae++ +++ + +pt+a ve++++  + +qiy+  l+++a
  CCE30052.1 1043 rmasvqqyldgetVLFQSRRPALMPYEDPILSAVKRVLFLGYYVLFPGAQARSMTIQLAERInFDKVAAKPTTAVVEIEAG--QHIQIYETALTLTA 1137
                  **************************************************************888889***********95..67************ PP

      Seipin  173 kltglrylmyshpilsfvvftllfw 197 
                  +l+glr+lm+++++l++ vft+lfw
  CCE30052.1 1138 QLRGLRWLMFHYRLLTYTVFTILFW 1162
                  ************************9 PP

>> FCH  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.1   4.8e-19   1.7e-15       1      76 [.      26      97 ..      26      98 .. 0.95

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 4.8e-19
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----TT-.....HHHHHHHHHHHHHHHHHHHHHH CS
         FCH  1 gfkvlqkrleqgialledlqeflkeRaeiEkeYakkLqkLakkylkrrkkkseestlvtawtvlleeteklaqshl 76
                g+ +l++r+++   ++++l++f+  Ra++E+eY++kL  L++k l++     e++tl+t++++l+ e+e +a++h+
  CCE30052.1 26 GVGPLLERMQSAKTTCDELKSFYSARASLEDEYSRKLLHLSRKSLGSH----ESGTLKTSLDTLRGEVEAMAKQHQ 97
                56789*****************************************54....679********************7 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.1   1.9e-12   6.9e-09       1      38 [.     882     919 ..     882     923 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.9e-12
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEET CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlk 38 
                 +AlY Y+a  ++EL f kGD + vl +++dgWw+++++
  CCE30052.1 882 RALYMYNAAIPEELGFAKGDFLAVLRHQDDGWWEAEDT 919
                 7**********************************987 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.28   9.9e+02      11      23 ..     282     294 ..     278     309 .. 0.83
   2 !   23.0   0.0   1.3e-08   4.7e-05       2      41 ..     881     917 ..     880     919 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.28
                 CGCCB--B-TTEE CS
       SH3_2  11 edkseLsfkkGdv 23 
                  ++  ++f++Gdv
  CCE30052.1 282 DPPKYINFCRGDV 294
                 45666*******7 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 1.3e-08
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwege 41 
                 +ra+  y+++ ++eL f kGd+++vl   ++ +dgwwe+e
  CCE30052.1 881 ARALYMYNAAIPEELGFAKGDFLAVL---RHQDDGWWEAE 917
                 788889********************...*********97 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1     1e-08   3.6e-05       1      37 [.     883     919 ..     883     926 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1e-08
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegslt 37 
                 Aly y++  ++eL + +GD++ v++  +dgW+e++ t
  CCE30052.1 883 ALYMYNAAIPEELGFAKGDFLAVLRHQDDGWWEAEDT 919
                 89**********************999*******964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1195  (0.0666518); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.89u 0.26s 00:00:01.14 Elapsed: 00:00:00.43
# Mc/sec: 9034.35
//
Query:       CCE30053.1  [L=2214]
Description: related to CDC39 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.7e-111  370.6   0.0   1.7e-110  369.4   0.0    1.7  1  Not1             CCR4-Not complex component, Not1
    5.9e-88  294.0   2.9    9.9e-88  293.3   2.9    1.4  1  CNOT1_CAF1_bind  CCR4-NOT transcription complex subunit 1 CAF
    3.3e-48  163.3   1.4    3.3e-48  163.3   1.4    2.1  2  DUF3819          Domain of unknown function (DUF3819)
    8.3e-40  136.0   0.0    2.2e-39  134.6   0.0    1.7  1  CNOT1_TTP_bind   CCR4-NOT transcription complex subunit 1 TTP
      1e-38  132.8   0.1      3e-38  131.2   0.1    1.9  1  CNOT1_HEAT       CCR4-NOT transcription complex subunit 1 HEA


Domain annotation for each model (and alignments):
>> Not1  CCR4-Not complex component, Not1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  369.4   0.0  4.9e-114  1.7e-110      10     367 ..    1858    2210 ..    1849    2211 .. 0.95

  Alignments for each domain:
  == domain 1  score: 369.4 bits;  conditional E-value: 4.9e-114
        Not1   10 kaleeeeeeillafaealhalqPlkfpgFvfaWleLisHRlflpklLelkdqkgwealakLlvdllkfleellkkaelsevvkvlykgtlrillvLl 106 
                  + ++ee+++++l++a +l+al P+++pgF+faW++Li+HR+flp lL++++++gw+a+++Llv++l+fl+e+lk+ ++++v+k+ly++t r+ll L+
  CCE30053.1 1858 DISDEEQHSMVLTIAARLEALGPQRLPGFCFAWISLIQHRAFLPLLLQMPNNAGWPAYMRLLVHHLEFLSEQLKAPDTARVTKELYRATHRLLLSLQ 1954
                  478999******************************************************************************************* PP

        Not1  107 hDfPeFLaenhyslcdaippsciqLrNlilsAfPkkmklpdpftpglkvdrleeikeaPkilsdvteaLeeaglkkevdeylkeepsesllaeilek 203 
                  hDfP FLa n+ +lc++i p+c++L   ++s++P++        +  + d  +++k +P++l++++++L++ gl   vd++l+++pse+++a+i+++
  CCE30053.1 1955 HDFPAFLAGNQLKLCATILPHCTHLMQAVVSSNPRQGFS-----K--SQDGQDDLKIHPSMLEEAKSILRDGGLLGLVDQTLQNGPSEDAVAQIAHA 2044
                  **********************************75433.....2..236678999***************************************** PP

        Not1  204 leleekeketg..ekikvnvklinalVlyvgieaieeakkksskavfstkssevallskLikeldpearYlllsaianqLRYpnshThyfskvllel 298 
                  ++++++++++   + + +n ++i a+ ly+ ++a+e+     s+++++ k++ev++ls Li+el p+arY+++ +++nqLR+p+  T +  ++ll++
  CCE30053.1 2045 MTQSQSSETAYgrVAMAANPSVIGAVSLYISHHAAERLGGVLSSTNVTGKEPEVSTLSLLIHELAPQARYYVIVSLVNQLRFPSGVTDFSGQLLLHI 2141
                  *977666544489*************************99998888999************************************************ PP

        Not1  299 FsekesdseekeiqeqItrvLlERlivnrPhpWGllitfieLiknekykfwelpfikaapeieelfesl 367 
                  F+++++d+e+++i+eqItrv++ERl+  +P+pWGl++t++eL+kneky+f++lpf+kaape++e+f+s+
  CCE30053.1 2142 FGKDMNDPEDTDIREQITRVFFERLFGFWPQPWGLILTVVELLKNEKYMFFNLPFVKAAPEVAERFASV 2210
                  *********99*******************************************************997 PP

>> CNOT1_CAF1_bind  CCR4-NOT transcription complex subunit 1 CAF1-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.3   2.9   2.8e-91   9.9e-88       3     222 ..     951    1170 ..     949    1173 .. 0.97

  Alignments for each domain:
  == domain 1  score: 293.3 bits;  conditional E-value: 2.8e-91
                       ----HHHHHHHHHHHHS--TTTHHHHHHHHHHH--GGGHHHHHHHHHHHTTTT-GGGHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHBS CS
  CNOT1_CAF1_bind    3 eepeeevqdkilfilnnlseenleeklkelkellkeeylkwfaqyLVekrvsiepnfhklYlkllekleskkLaeevlketlknikklLnse 94  
                       e p e+ q ki+f+lnn++e+++ +  ++l+++l++++++wfa++LVe+r++++pn+h++Yl+l++ l++k+L++e++++t+  ++k+Lnse
       CCE30053.1  951 EIPGEDDQGKIQFVLNNITESTILSMRNDLRDMLEHKHQQWFANHLVEERAKMQPNYHHVYLELVTLLQDKSLWNEIVRATYVGVSKMLNSE 1042
                       67889999************************************************************************************ PP

                       -G..GGS-HHHHHHHHHHHHHHTGGGT----TTTB-HHHHHHHHHHTT-HHHHHHHHHHHHGGGGG-TTTSTT-HHHHHHHHHHHHHHHHT- CS
  CNOT1_CAF1_bind   95 ktlessserslLknLgsWLGsiTlarnkpikhknlalkeLLleayekgrlevvipfvckvLesakkSkvFkppnpWlmailklLaelyelad 186 
                       +tl++s+er+ LknLg WLG +Tlar++pikhkn+a+k+LL+ea++++rl+vvipfvck+L + ++S vF+ppnpWlm+i+ lL+ely+ a+
       CCE30053.1 1043 ATLQNSTERAYLKNLGGWLGLLTLARDQPIKHKNIAFKQLLMEAHDTKRLIVVIPFVCKILMQGASSAVFRPPNPWLMDIIYLLIELYHNAE 1134
                       ******************************************************************************************** PP

                       --HHHHHHHHHHHHHTT--TTSS---S----XXXXX CS
  CNOT1_CAF1_bind  187 lklnlkFeievLckeLkldlkdlepsellkerekee 222 
                       lklnlkFeievLck L+ld+k+++ps  + +r   e
       CCE30053.1 1135 LKLNLKFEIEVLCKGLNLDHKSIKPSGEILNRPVIE 1170
                       **************************9998887655 PP

>> DUF3819  Domain of unknown function (DUF3819)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.3   8.1e+03      69      95 ..     974    1001 ..     966    1013 .. 0.71
   2 !  163.3   1.4   9.3e-52   3.3e-48       2     146 .]    1230    1369 ..    1229    1369 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.3
                  HHHHHHHHHHHHHHHHH-----...--- CS
     DUF3819   69 vtckepLresissnlrqllknal.tkql 95  
                   + ++ Lr  ++++ +q ++n+l ++  
  CCE30053.1  974 LSMRNDLRDMLEHKHQQWFANHLvEERA 1001
                  5678889999999999999988753333 PP

  == domain 2  score: 163.3 bits;  conditional E-value: 9.3e-52
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----..------ CS
     DUF3819    2 dlkklvqlaierairEiiqpvversvtiAvitteelvkKDFalepdenkmrkaahlmvrnLagsLalvtckepLresissnlrqllknaltkqlkeq 98  
                  +l+++v++a++ra+++iiqpvv+rsvtiA+i+t ++++KDF  epden++r++a +mv++ agsLalvt+kepLr+++++++r+l ++      ++ 
  CCE30053.1 1230 RLHEIVRNALTRALQDIIQPVVDRSVTIAAISTAQMIRKDFVAEPDENRVRTSAINMVKATAGSLALVTSKEPLRANLTNYMRNLSNDL-----PSG 1321
                  5899*********************************************************************************9998.....555 PP

                  -.---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH CS
     DUF3819   99 eleqaiqilvndNlelacaliekaaaekavreideklakelearkthr 146 
                   +e +i ++v++Nl+lac++iek a e+av+ei++++++elear++hr
  CCE30053.1 1322 LPEGTIIMCVSSNLDLACSIIEKQAEERAVPEIEDMIEPELEARRRHR 1369
                  56999******************************************8 PP

>> CNOT1_TTP_bind  CCR4-NOT transcription complex subunit 1 TTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.0   6.2e-43   2.2e-39      32     169 ..     742     882 ..     721     900 .. 0.90

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 6.2e-43
  CNOT1_TTP_bind  32 eveeeansyFqklYseeisveevietLkkfksskskrekevfacmiknLfdEyrffpqYPekeLkitaqLfGsiieeqLvsykalgiaLrivLea 126
                      ++++ +  ++ +Y  e+ v +++e+L+++k+s ++ +++ f+cmi+ LfdEy++++ YP + L +ta LfG+ii+++L+s ++l+i L ++Lea
      CCE30053.1 742 AANAKMEDHYKMMYGDEMEVRSIVEILRRYKHSRDPLDQDTFSCMIHGLFDEYSHYNTYPLEALATTAVLFGGIISHKLISDLPLKIGLGMILEA 836
                     667888999************************************************************************************** PP

  CNOT1_TTP_bind 127 lrk.ppgskmfefgikaLeqfksrLkeypqycqhlasiphlk..ef 169
                     +r  pp+  m++fg++aL+q+  r+ e+p +c++l +i+ l+  e 
      CCE30053.1 837 VRDsPPQEPMYKFGLQALMQLLVRFREWPGFCKQLLAISGLQgtEA 882
                     **98999********************************9995444 PP

>> CNOT1_HEAT  CCR4-NOT transcription complex subunit 1 HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.2   0.1   8.3e-42     3e-38       2     150 .]     546     693 ..     545     693 .. 0.97

  Alignments for each domain:
  == domain 1  score: 131.2 bits;  conditional E-value: 8.3e-42
                 HHHHHHHHHHHH.HS-GGGHHHHC--HHHHHHHHHS-S-........-SHHHHHHHHTT-HHHHHHHS-TTCHHHCHHHHHHHT---HHHHHHHH--TT CS
  CNOT1_HEAT   2 elidelfplfls.nhpnsalvlhklweidrqlllkalvdayakdplelsrIldvaqelkilsellnklpfnfaldLaalasrreyldlekwledklkeh 99 
                 +++++lf++fl+ ++p++++vl++lw++dr++++++l+da+a +p++l+ I+++a ++++l+ l++  p  f++dLaa+a++++yldl +w++ + +  
  CCE30053.1 546 DTLNSLFENFLYkRSPQYDFVLDSLWRKDREWVTARLIDAHAVKPSDLPLIFEHAVRHDWLDFLVYL-PNGFGMDLAAFAHAEGYLDLNNWANFNKD-R 642
                 789****************************************************************.978*********************99999.5 PP

                 ...THHHHHHHHHHHHH--T.......TTSSSSTTTS--HHHHHHHHHHHH CS
  CNOT1_HEAT 100 gekfvqalldfLeekakqelerqeekpsnepepkskslsvetvatlLevLq 150
                 g++++q+l +fL++k++ el  q++ p + ++++s+sl+v+tv +lL++L+
  CCE30053.1 643 GSEIAQTLTQFLMIKCELELTAQRSPPDSMQAKPSTSLQVRTVLALLTILE 693
                 588********************99999999******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.49
# Mc/sec: 13702.60
//
Query:       CCE30054.1  [L=421]
Description: uncharacterized protein CPUR_03902 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.046   13.2   3.7      0.066   12.7   3.7    1.2  1  HGTP_anticodon2  Anticodon binding domain of tRNAs
        1.1    8.0   8.7        1.5    7.6   8.7    1.2  1  Apt1             Golgi-body localisation protein domain
        1.2    9.8   5.1        2.8    8.6   5.1    1.7  1  NAM-associated   No apical meristem-associated C-terminal dom
        1.6    7.2  11.5        2.1    6.8  11.5    1.1  1  Macoilin         Macoilin family
        6.5    6.3   7.3        2.8    7.5   4.6    1.7  2  PPP4R2           PPP4R2
        9.4    5.9  15.4         19    4.9  15.4    1.5  1  PAP1             Transcription factor PAP1


Domain annotation for each model (and alignments):
>> HGTP_anticodon2  Anticodon binding domain of tRNAs
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.7   2.2e-05     0.066     117     205 ..      39     132 ..      21     182 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.2e-05
  HGTP_anticodon2 117 skssaessqkedeass....esseele.ealaskeerqkevrvlvaatrskksnkrekveqddAqeaaaelvksllngpiaaidtrd.evlemi 204
                      ++s ++ss+++ + ss    +ss++l+ + +++++++ ++   +++ + sk+ ++ + v + +     +++++s + +p+a+++t+d +v+  i
       CCE30054.1  39 PSS-SSSSSSSLSPSSssspSSSSSLStSGTSTTSAHLSDSGDSMDSHSSKRLKRSHGVASRSKNVVHEKIIHSSSLAPVASVETSDaDVIAKI 131
                      111.111111111111111223333333445555566677777999******999999999555566789***************763677766 PP

  HGTP_anticodon2 205 s 205
                       
       CCE30054.1 132 D 132
                      5 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   8.7   0.00051       1.5     324     394 ..      36      96 ..       8     191 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00051
        Apt1 324 sessssssssssssassssssssrssslelrlkptsstssssssessssssskkrsseesslessaserv.....k 394
                 s+ +sssssssss +   ssss             s +ssss s+s +s++s+  s + +s+ s++s+r       
  CCE30054.1  36 SRRPSSSSSSSSSLSP--SSSS-------------SPSSSSSLSTSGTSTTSAHLSDSGDSMDSHSSKRLkrshgV 96 
                 1111111111111111..1111.............11111111111111111111111222222222222111111 PP

>> NAM-associated  No apical meristem-associated C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.1   0.00094       2.8      31      85 ..      39     101 ..      25     175 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00094
  NAM-associated  31 pkssassspatsssestdee.......dssesssesseesaadsestsssrlkRPiGkkk.aK 85 
                     p+ss+sss++ s s+s++++       + ++ +s+  ++s  + +s ss+rlkR  G  + +K
      CCE30054.1  39 PSSSSSSSSSLSPSSSSSPSsssslstSGTSTTSAHLSDSGDSMDSHSSKRLKRSHGVASrSK 101
                     333333332222222222222000201223333333344444555666667777777655455 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  11.5    0.0007       2.1     322     393 ..      36     129 ..      16     185 .. 0.47

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0007
    Macoilin 322 ssssssnknskkasagsagssnssskkhsessksvtsss........ssknskkqklpaGkssaalkdaaenslpnnql..............s 393
                 s  +ss+++s+++ + s++ss sss ++s+s  s+ts+          s++sk+ k + G +s++++   e+++ +++l              +
  CCE30054.1  36 SRRPSSSSSSSSSLSPSSSSSPSSSSSLSTSGTSTTSAHlsdsgdsmDSHSSKRLKRSHGVASRSKNVVHEKIIHSSSLapvasvetsdadviA 129
                 1111111111111111222222222222222222222222222344344555566677777777777777777777777444444443333330 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.6   0.00092       2.8     167     249 ..      29     106 ..       7     139 .. 0.76
   2 ?   -2.0   0.0      0.73   2.2e+03     187     247 ..     222     280 ..     212     342 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00092
      PPP4R2 167 eedkansssqedsedvslvsipwvdekteselspfikeidsimsvnlgfedeeekeedd...neseesaseseeiteekdesvkve 249
                  ++++ +s  ++s+ +s +s++++ +++ s++s+ ++  +s+ s++l++  +++++++    +         ++ +++++++v  e
  CCE30054.1  29 AAASNKASRRPSSSSSSSSSLSPSSSSSPSSSSSLSTSGTSTTSAHLSDSGDSMDSHSSkrlK--------RSHGVASRSKNVVHE 106
                 55667778888999999*************************************999554442........233334444444333 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.73
      PPP4R2 187 ipwvdekteselspfikeidsimsvnlgfedeeekeeddneseesaseseeiteekdesvk 247
                 +p+ + +++s  +p ++ + ++ sv+l +++ +++ +  ++ ++ + + e + ++ d +++
  CCE30054.1 222 CPRQPLSDSSIPQPIHRSPIVTPSVSLTDDSGSDDVD--ARRRDLSPSPEVDLSSPDFDDM 280
                 5555555666666666666666666666666666555..3333333333333333333333 PP

>> PAP1  Transcription factor PAP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  15.4    0.0062        19     110     190 ..      26     106 ..       6     142 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0062
        PAP1 110 stassaesqsstysansgtstssdSPsssseshqgq.lSScgTSPEPstqSPaakksketsstieeeevahttidgeksfce 190
                 ++a+ a+++ s    +s++s+ss SPssss+ +++  lS +gTS    + S ++    +++s+   ++    ++ +++   e
  CCE30054.1  26 RAAAAASNKASRRPSSSSSSSSSLSPSSSSSPSSSSsLSTSGTSTTSAHLSDSGDS-MDSHSSKRLKRSHGVASRSKNVVHE 106
                 333333333334444445666789**999998877668999999888777776666.4444333333333344444444445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1145  (0.063863); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 2979.28
//
Query:       CCE30055.1  [L=428]
Description: uncharacterized protein CPUR_03903 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-16   60.8   0.0    1.9e-16   60.3   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
     0.0018   18.9   0.0          1   10.1   0.0    3.0  1  Methyltransf_11  Methyltransferase domain
     0.0018   18.9   0.0       0.35   11.6   0.0    3.3  2  Methyltransf_25  Methyltransferase domain
     0.0066   17.2   0.0      0.053   14.3   0.0    2.3  1  Methyltransf_12  Methyltransferase domain
      0.007   16.2   0.0        1.9    8.3   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
       0.53   10.3   4.4        1.4    8.9   4.4    1.7  1  SEC-C            SEC-C motif


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   6.4e-20   1.9e-16       9     158 ..     158     390 ..     145     401 .. 0.79

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 6.4e-20
  Methyltransf_23   9 lsdklerllpklraggrvLdiGcGtGillevlre......................ngf.svtgvDlspeaveiae.................. 61 
                      ++++++rl+  + a g+vL+++ GtG++le+++                       +g  s+tg D+s  + + a+                  
       CCE30055.1 158 IKKLRKRLA--ECAHGNVLEVAIGTGRNLEYYQWdglngqnkakikdkskdmrkgnHGItSFTGLDMSVDMLDVARkrlvktvpqldacepvvk 249
                      567888888..6899****************955556666777777777777766545569*************99999999999999988887 PP

  Methyltransf_23  62 ..................................................kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqi 105
                                                                        ++ +a ++++       + +++d+I ++++l++v dp ++l ++
       CCE30055.1 250 kptmadqtggqltflndrirlvrsdvhtalpppvvagaayaatrspplppTTATATPKPT-------NPKYYDTILQTFGLCSVADPVAVLCNL 336
                      777777777777777776666666666666666666666666666555555555555555.......666************************ PP

  Methyltransf_23 106 atllkpg.Gylllseplaslk.edrllldwlylvpagrhisffsarslkelleea 158
                      a+ +kp+ G+++l+e+++ ++   + lld  +  + ++ +++++ r++  l+eea
       CCE30055.1 337 ASAVKPNtGRIILLEHGRGWSgLVNGLLDRNARKHFDKYGCWWN-RDIDALVEEA 390
                      *****************99965666677777788888888****.99*9999987 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00033         1      47      91 ..     286     343 ..     174     349 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00033
                      E.............TTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11  47 f.............vvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                                      a+a+  p + +++D ++ ++ l+ v+dp ++l ++a  +kp+
       CCE30055.1 286 GaayaatrspplppTTATATPKPTNPKYYDTILQTFGLCSVADPVAVLCNLASAVKPN 343
                      0444444444433355666666777888888888888888888888888888888886 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00012      0.35      20      46 ..     213     239 ..     173     282 .. 0.71
   2 ?    1.5   0.0      0.17     5e+02      50      96 ..     299     343 ..     257     343 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                      TSSEEEEEESSHHHHHHHHHHHHHTTT CS
  Methyltransf_25  20 gkakvtgvDiseemleaareraeeegl 46 
                      g  ++tg+D+s +ml+ ar+r+ +  +
       CCE30055.1 213 GITSFTGLDMSVDMLDVARKRLVKTVP 239
                      5799*****************977544 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.17
                      EEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEE CS
  Methyltransf_25  50 fvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpg 96 
                        ++ a+  p + + +D ++ +++l+ +  +d  ++l ++a+++kp+
       CCE30055.1 299 PTTATATPKPTNPKYYDTILQTFGLCSV--ADPVAVLCNLASAVKPN 343
                      5556666667788899999998776655..577899*9999999995 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.8e-05     0.053      19      96 ..     213     343 ..     174     346 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.8e-05
  Methyltransf_12  19 pdieytgvDispsaiedakeklakrennn.nnnvelealdlldldgg............................................... 64 
                        +++tg+D s ++++ a+++l k  ++  + +  +++   +d+ gg                                               
       CCE30055.1 213 GITSFTGLDMSVDMLDVARKRLVKTVPQLdACEPVVKKPTMADQTGGqltflndrirlvrsdvhtalpppvvagaayaatrspplppttatatp 306
                      445788*********888888877766540444455555555666669********************************************** PP

  Methyltransf_12  65 .....ssfDlvvasnvlhhlkdirevldnirklLkpg 96 
                           +++D+++  + l+ ++d+ +vl n+++++kp+
       CCE30055.1 307 kptnpKYYDTILQTFGLCSVADPVAVLCNLASAVKPN 343
                      **************999999****************8 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0045        13      30      48 ..     215     234 ..     193     240 .. 0.83
   2 !    8.3   0.0   0.00063       1.9      73     150 ..     312     389 ..     302     411 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0045
  Methyltransf_31  30 e.vvGiDiseeaielArena 48 
                      + ++G+D+s +++ +Ar+++
       CCE30055.1 215 TsFTGLDMSVDMLDVARKRL 234
                      3599*************986 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00063
  Methyltransf_31  73 ekfDlilsnevlnaladpdkileeiervlkpgg..illiedprllaelp.....akveeeskayevvegakigtqkdelyellee 150
                      + +D il    l+ +adp ++l ++ +++kp++  i+l+e+ r+++ l      ++++++ ++y+++       ++ +++ l+ee
       CCE30055.1 312 KYYDTILQTFGLCSVADPVAVLCNLASAVKPNTgrIILLEHGRGWSGLVnglldRNARKHFDKYGCW-------WNRDIDALVEE 389
                      668999998888*******************963345556666555555444457777777777777.......66666666665 PP

>> SEC-C  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   4.4   0.00047       1.4       3       9 ..     113     119 ..     112     121 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00047
       SEC-C   3 dpCPCGS 9  
                 dpCPCGS
  CCE30055.1 113 DPCPCGS 119
                 9*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3246.31
//
Query:       CCE30056.1  [L=517]
Description: related to impact protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-25   89.4   0.0      4e-25   88.2   0.0    1.7  2  UPF0029   Uncharacterized protein family UPF0029


Domain annotation for each model (and alignments):
>> UPF0029  Uncharacterized protein family UPF0029
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0   2.2e-29     4e-25       1     105 []     267     375 ..     267     375 .. 0.95
   2 ?   -3.9   0.1      0.96   1.7e+04      55      75 ..     432     454 ..     424     455 .. 0.69

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 2.2e-29
                 TTEEEEEEEEE-SSHHHHHHHHHHH--..TT...SSEEEEEE....EE.....TTEE-TTSSTSHHHHHHHHHHTTB-SEEEEEEEE--SS--HHHHHH CS
     UPF0029   1 kkSrFiavlaaveseeevkaileelkkenkk...athniyAyrlrqkvek.vnedsdddgEpaAGkkllelLekeklenvlvvvtRwfGGikLGpgrlr 95 
                 k S+Fia+ a+++s++   ++++ l++++++   athn++A r++  ++  v+e s+ddgE++AG+ ll ++++++++n+lv+ tRw+GG++LGp+r+r
  CCE30056.1 267 KGSTFIAHTAELTSPSLRTSLMKGLMSDKPDletATHNVWALRCSYGNSPlVQEASSDDGETGAGNFLLGIMREAHITNTLVILTRWYGGVMLGPDRWR 365
                 68*************************999999*********9998776546777******************************************** PP

                 HHHHHHHHHH CS
     UPF0029  96 aiseaareaL 105
                  ++e++++aL
  CCE30056.1 366 LMRECVNDAL 375
                 *******997 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.96
                 TTSST..SHHHHHHHHHHTTB-S CS
     UPF0029  55 dgEpa..AGkkllelLekeklen 75 
                 dg  +   Gkk l +L+ ek  n
  CCE30056.1 432 DGGDGrrEGKKTLVALQDEKQAN 454
                 44444478999999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4042.26
//
Query:       CCE30057.1  [L=326]
Description: probable CDC28-cyclin-dependent protein kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-69  234.1   0.0    2.4e-69  233.6   0.0    1.2  1  Pkinase        Protein kinase domain
    5.1e-31  107.9   0.0    6.5e-31  107.6   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
    0.00059   18.9   0.0      0.011   14.8   0.0    2.0  2  Haspin_kinase  Haspin like kinase domain
     0.0013   18.1   0.0     0.0024   17.3   0.0    1.4  1  Kinase-like    Kinase-like
     0.0048   16.8   0.0       0.01   15.8   0.0    1.5  1  APH            Phosphotransferase enzyme family
      0.006   15.7   0.0      0.009   15.1   0.0    1.2  1  Seadorna_VP7   Seadornavirus VP7
     0.0062   15.9   0.1      0.019   14.3   0.0    1.7  2  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.6   0.0   9.4e-73   2.4e-69       1     264 []       4     307 ..       4     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: 233.6 bits;  conditional E-value: 9.4e-73
                 EEEEEEEEEESSEEEEEEEETTT.TEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHH....... CS
     Pkinase   1 yekleklGeGsfGkVykaveket.gkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladlle....... 90 
                 y+klek+GeG++G+Vyka++ ++ g+ivA+Kki+ e +++   ++++rEi++lk++k +nivrl++++++  ++lylv+e+++ + l++++e       
  CCE30057.1   4 YQKLEKVGEGTYGVVYKARDLSNgGRIVALKKIRLEAEDEGVPSTAIREISLLKEMKDDNIVRLFNIVHSdGHKLYLVFEFLDLD-LKKYMEalpvsdg 101
                 7899***************9766269*****************************************99846789********77.9999888888888 PP

                 .......HHSS--HH.............HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHH CS
     Pkinase  91 .......rkgslsee.............eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEv 168
                        +                     ++k++ q++ g++y+Hs++++HrDlKp+N+Lid++g+lK++DFGla+ +    + +t++v+t +Y+APE+
  CCE30057.1 102 grgkplpE------GtsttimhlglddaVTRKFMMQLCDGVKYCHSRRVLHRDLKPQNLLIDKEGNLKLADFGLARAFGVPLRtYTHEVVTLWYRAPEI 194
                 85555540......4555555556665599************************************************988777*************** PP

                 H.TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS......................-HHHHHHHHH CS
     Pkinase 169 l.keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei......................seeakdllkk 243
                 l ++++ys+ vD+Ws+G+i++e+ t+k +f+   g++    e+d+++ki++ lg + + ++p  ++                       +++ ++ll+ 
  CCE30057.1 195 LlGGRQYSTGVDMWSVGCIFAEMCTRKALFP---GDS----EIDEIFKIFRALGtPDEDTWPDVTSYpdfkssfpkwkrdyrtplchnlDKKGLELLEM 286
                 *9*****************************...666....8999999999999766677777777799999999999********************* PP

                 HT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 244 llkkdpkkRltaeellqhpyl 264
                 ll +dp  R++a+++++hpy+
  CCE30057.1 287 LLIYDPAGRISAKQACNHPYF 307
                 ********************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.0   2.5e-34   6.5e-31       4     201 ..       7     220 ..       4     254 .. 0.89

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 2.5e-34
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHT.... CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkk.... 95 
                   +k+GeG++G V++++     ++    Va+K+++ ea++e   +  ++e++++k++k +niv+l  ++  ++++l++v+e+++  dL+k++++     
   CCE30057.1   7 LEKVGEGTYGVVYKARDL---SNGGRIVALKKIRLEAEDEGvPSTAIREISLLKEMKDDNIVRLFNIVHsDGHKLYLVFEFLDL-DLKKYMEALpvsd 100
                  689************998...89999*******98777776478899*********************977888********98.9*******9**** PP

                  ...............CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHH CS
  Pkinase_Tyr  96 ...............ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslk 178
                                  +  l+   + +f++q+++G++y +s++++Hrdl  +N L++++   k++DfGLar+       ++ +++ + + + apE+l 
   CCE30057.1 101 ggrgkplpegtsttiMHLGLDDAVTRKFMMQLCDGVKYCHSRRVLHRDLKPQNLLIDKEGNLKLADFGLARAF--GVPLRTYTHEVVTLWYRAPEILL 196
                  **********99954444445555669**********************************************..66667778888999999***987 PP

                  HSE.EEHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 179 ekk.ftsksDvWsfGvllwEiftl 201
                   ++ +++  D+Ws G +  E++t 
   CCE30057.1 197 GGRqYSTGVDMWSVGCIFAEMCTR 220
                  6555*****************995 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.031        79     103     150 ..       5      59 ..       1      89 [. 0.66
   2 !   14.8   0.0   4.1e-06     0.011     230     258 ..     146     179 ..     143     203 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.031
  Haspin_kinase 103 asllndseklssevyqtke...kdkevvlKviplevledvtis...kelsl.kel 150
                    ++l + +e+ ++ vy++++     + v+lK+i le+ ++   s   +e+sl ke+
     CCE30057.1   5 QKLEKVGEGTYGVVYKARDlsnGGRIVALKKIRLEAEDEGVPStaiREISLlKEM 59 
                    44555599999999*9998764567899******766663333112333333333 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4.1e-06
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsRle.....s 258
                    HRdL+ +n L+dk++n  l d+ l+R+      +
     CCE30057.1 146 HRDLKPQNLLIDKEGNLKLADFGLARAFgvplrT 179
                    **************************97666553 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   9.2e-07    0.0024     145     243 ..     125     217 ..     109     245 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.2e-07
  Kinase-like 145 arlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl...sevekgfaPpEllgsrggytrknktkmthkldaWqlGlv 239
                   r+ + +ql   + + +++ ++h +++++nll d++g l+l +f+  +  g   +      v   +  pE+l   g        +++ ++d W +G  
   CCE30057.1 125 TRKFM-MQLCDGVKYCHSRRVLHRDLKPQNLLIDKEGNLKLADFGLARAFGVPLRTythEVVTLWYRAPEILLG-G-------RQYSTGVDMWSVGCI 213
                  44444.89999999******************************977777765554211223356777887765.2.......367888888888865 PP

  Kinase-like 240 iyri 243
                     +
   CCE30057.1 214 FAEM 217
                  4444 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     4e-06      0.01     165     197 ..     141     171 ..     124     192 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4e-06
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 ++++lH+Dl+p+Nll+d++++    + Df++a+
  CCE30057.1 141 SRRVLHRDLKPQNLLIDKEGNLK--LADFGLAR 171
                 5789*************666666..88999886 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.5e-06     0.009     157     186 ..     139     166 ..     122     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.5e-06
  Seadorna_VP7 157 fhsestnllhGDcnpenlmcDknGylklvD 186
                    h  s  +lh D +p+nl+ Dk G+lkl D
    CCE30057.1 139 CH--SRRVLHRDLKPQNLLIDKEGNLKLAD 166
                   44..7899********************99 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.94   2.4e+03      56      72 ..      47      63 ..      20      70 .. 0.75
   2 !   14.3   0.0   7.4e-06     0.019     115     166 ..     120     167 ..     111     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.94
         Kdo 56 travrEfrllkrLeeag 72
                 +a rE++llk++++  
  CCE30057.1 47 STAIREISLLKEMKDDN 63
                47899999999998765 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 7.4e-06
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 l+++++r+ ++++   ++  h++ v H+dl ++n+l+++e+    ++ l D+
  CCE30057.1 120 LDDAVTRKFMMQLCDGVKYCHSRRVLHRDLKPQNLLIDKEG----NLKLADF 167
                 68899**********************************99....5555565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2572.57
//
Query:       CCE30058.1  [L=381]
Description: related to cyclin pclA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-14   53.6   0.0    3.5e-14   52.6   0.0    1.5  1  Cyclin_N  Cyclin, N-terminal domain
    1.5e-10   41.7   0.1    3.5e-10   40.5   0.1    1.6  1  Cyclin    Cyclin


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   3.9e-18   3.5e-14      18     127 .]      65     191 ..      52     191 .. 0.82

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 3.9e-18
                 TCT....TCTSSS-H..HHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHH.HS---CC...CHHHHHHHHHHHHHHHHSSS---HHHHHHHT.... CS
    Cyclin_N  18 dyl....dqqpelnp..emRailidwlvevaekfkltpetlflavnyldRfls.kksvpkd...klqlvgatcLllAaKveeisppkledlvyit.... 102
                 ++l     q+p+ +   ++ ++l +++ +++ + +++  tl+ +++yl R+ s  + + +    + +++++++L+l+aK+ ++s+pk ++++ +t    
  CCE30058.1  65 SHLssttPQSPNCEAadNTLPSLEQFISQLVMSSNVQVPTLMSSLVYLTRLKSkLQPMARGlrcTTHRIFLASLILSAKYLNDSSPKNKHWANYThftt 163
                 333323455666433348999999*****************************54567666888*******************************9997 PP

                 TT...SS-HHHHHHHHHHHHHHTTT--- CS
    Cyclin_N 103 de...afteeeilemErliLetLnfdls 127
                 d     f+++e++ mE+++L  L++dl+
  CCE30058.1 164 DVysfGFNRTEVNLMEKQLLFLLDWDLR 191
                 225569********************95 PP

>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1   3.9e-14   3.5e-10       9     161 .]      33     190 ..      26     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 3.9e-14
                 HHHHHHHHHHH--------------T.....................T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H-TT---ST CS
      Cyclin   9 llldrlvanndetatasadsksnlensqkqssshtkttfaqtpkessFatkavpaisigsylsrlqkfgesaplvllgtliYldrivkrcvsealvvts 107
                 ++  r v + d+t   s+  +s+ ++ q+q  sh   t+ q+p++ +   +++   s+ + +s+l   ++++   l+++l+Yl r+    ++ +     
  CCE30058.1  33 AEAARNVIACDSTMMLSKTHPSPPSHKQRQQPSHLSSTTPQSPNCEAADNTLP---SLEQFISQLVMSSNVQVPTLMSSLVYLTRLKS-KLQPMARGLR 127
                 56778899999999999999**99999*****************998777766...89****************************99.6777777778 PP

                 TTHHHHHHHHHHHHHHHH-SS---HHHHHHHH.........TS-HHHHHHHHHHHHHHTTT-- CS
      Cyclin 108 anihRllivallvatKflvDlsysnekfakvg.........gislkELnkLEidFlflvdFdl 161
                  + hR+ +++l  + K l+D+s +n+++a+ +         g   +E+n +E + lfl+d+dl
  CCE30058.1 128 CTTHRIFLASLILSAKYLNDSSPKNKHWANYThfttdvysfGFNRTEVNLMEKQLLFLLDWDL 190
                 999***************************7644443333344679**************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3122.39
//
Query:       CCE30059.1  [L=1520]
Description: probable ABC1 transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-80  267.6  55.2    3.9e-42  144.0  17.0    3.2  3  ABC2_membrane    ABC-2 type transporter
    1.2e-38  132.7   0.0    3.1e-18   66.6   0.0    2.5  2  ABC_tran         ABC transporter
    2.4e-31  107.5   1.6    3.9e-28   97.2   0.1    3.1  2  PDR_CDR          CDR ABC transporter
      5e-17   62.3   0.0    1.3e-16   61.0   0.0    1.8  1  ABC_trans_N      ABC-transporter N-terminal
    6.9e-07   29.0   0.0    0.00011   21.8   0.0    2.3  2  AAA_25           AAA domain
    1.7e-06   28.2   0.1     0.0011   19.2   0.0    2.6  2  AAA_33           AAA domain
      4e-06   27.3   0.4     0.0005   20.5   0.1    2.4  2  AAA_16           AAA ATPase domain
    1.1e-05   25.1   0.5     0.0024   17.6   0.1    2.6  2  AAA_29           P-loop containing region of AAA domain
    2.3e-05   23.7  13.9    2.3e-05   23.7  13.9    4.1  4  ABC2_membrane_3  ABC-2 family transporter protein
    4.1e-05   23.6   0.1     0.0035   17.3   0.0    2.3  2  RsgA_GTPase      RsgA GTPase
    0.00032   21.2   0.1     0.0038   17.8   0.0    2.5  2  AAA_18           AAA domain
    0.00045   19.7   0.0     0.0065   15.9   0.0    2.6  2  SMC_N            RecF/RecN/SMC N terminal domain
    0.00063   19.4   0.8      0.028   14.0   0.1    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0036   17.2   0.0       0.26   11.1   0.0    2.5  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0054   17.0   0.3       0.52   10.6   0.0    2.8  2  AAA_22           AAA domain
     0.0071   16.4   0.2        3.7    7.7   0.1    2.7  2  MMR_HSR1         50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.019   14.7   0.1       0.45   10.2   0.1    2.4  2  AAA_30           AAA domain
      0.023   14.6   2.1        1.3    8.9   0.4    2.5  2  NACHT            NACHT domain
      0.026   15.0   0.2        0.6   10.5   0.0    2.8  2  AAA_17           AAA domain
       0.03   14.8   0.1        3.6    8.0   0.0    3.2  3  AAA              ATPase family associated with various cellul
      0.031   14.8   0.0      0.088   13.3   0.0    1.7  1  AAA_23           AAA domain
      0.087   13.2   0.1         19    5.7   0.0    2.7  2  RNA_helicase     RNA helicase
       0.14   12.4   0.6       0.41   10.9   0.3    2.0  2  AAA_28           AAA domain
       0.17   12.2   0.2         30    4.9   0.1    3.0  2  SbcCD_C          Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0  17.0   5.3e-45   3.9e-42       2     210 .]     514     723 ..     513     723 .. 0.97
   2 ?   -0.3   0.3      0.81   6.1e+02     163     182 ..     779     798 ..     763     816 .. 0.62
   3 !  132.9  24.6   1.3e-41   9.9e-39       2     209 ..    1186    1395 ..    1185    1396 .. 0.97

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 5.3e-45
  ABC2_membrane   2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsay 96 
                    q+k++++r ++++w d + + +++ i+ +++al++g++f++++  + +++ r  +lf+++l++a+++l+++ +    +r+++e++ ++ +y++sa 
     CCE30059.1 514 QVKLCTRRAYQRIWNDITAT-ATQAISNVVMALIIGSIFFGTPdATVSFYGRGSVLFMAILMNALTSLSEI-TGLYDQRPIVEKHASYAFYHPSAE 607
                    99******************.*********************9667777799************9999999.************************ PP

  ABC2_membrane  97 vlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm.pkwl 189
                    ++a v++++pv ++ a++f ++ yfl  l+++   ffl++l+++++++++s++++ ++a ++++ +a+ ++++++l l++++Gf ip++ m p w+
     CCE30059.1 608 AAAGVMADIPVKFVTAVAFNVVLYFLSELRREpgPFFLYFLITYISTMVMSAVFRTMAAATKTVSQAMSISGVLVLALVIYTGFAIPVPEMhP-WF 702
                    ********************************9888*******************************************************77.** PP

  ABC2_membrane 190 qwiaylnPltyavealrsnlf 210
                     wi ++nP++ya+e+l++n+f
     CCE30059.1 703 SWIRWINPVFYAFEILVANEF 723
                    *******************97 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.81
  ABC2_membrane 163 qlaslvllpllllsGffipi 182
                    +++ l+ ++ ++ls +f+++
     CCE30059.1 779 NFGILIAFLVFFLSTYFVTV 798
                    34444444444444444443 PP

  == domain 3  score: 132.9 bits;  conditional E-value: 1.3e-41
  ABC2_membrane    2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvl.erelvsplysls 94  
                     q+++++ r f+q+wr p+++ +++l+  ++ +l++g+ f+++++++ g + + +  f++++++ s +++++p+f+++r+++ +re++s+ ys+ 
     CCE30059.1 1186 QLQIVTHRIFQQYWRMPAYI-FAKLALGIFAGLFIGFTFFDAKSTKAGTQAVIFNTFMLTTIFSSVVQQMQPMFVTQRSLYeVRERPSKAYSWQ 1278
                     99******************.99********************9999999******************************************** PP

  ABC2_membrane   95 ayvlakvlvelpvsllqalifll.ivyflvgldls.rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmp 186 
                     ++++a+++ve+p++++ a+++++  +y+++g++ s r +l+l++++ ++++ass++++  a +p++++a+ +++++ ++ +++sG++ + +++p
     CCE30059.1 1279 VFMIANIVVEIPYQAFTAILIWAaSYYPVIGIQSSdRQGLVLVFVIQLFIYASSFAIMCQAAMPDAHTAGSVVNVLAILSIVFSGVLQTAQALP 1372
                     ***********************5555568******99******************************************************** PP

  ABC2_membrane  187 kwlqwiaylnPltyavealrsnl 209 
                     +++ ++++++P+ty v ++++++
     CCE30059.1 1373 GFWVFMYRVSPFTYWVGGIVGTE 1395
                     *****************999876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   3.4e-20   2.5e-17       8     136 ..     192     345 ..     185     346 .. 0.90
   2 !   66.6   0.0   4.1e-21   3.1e-18       1     137 []     885    1036 ..     885    1036 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 3.4e-20
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...................esde 83 
                 l++ge++ ++G+ G+G+StLlk+++g+l+     ++ +i+++g + k+  +++++ e+ + ++ +++fp+ltv+++                       
  CCE30059.1 192 LSPGELLIVLGRPGSGCSTLLKTMCGELQGlelgEQSNIHYNGISQKN-MMKEFKGEMVYNQEVDKHFPHLTVGQTlefaasvrtpqrriqgmsrV--- 286
                 89***************************99999999*****998888.99**********999***************99999887777765550... PP

                 C.....HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 x.....xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 e.....iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                 e     ++ +++ +gl+++ +t+v+++  + +SgG+++rv++a++++  ++l  +D+ t
  CCE30059.1 287 EycqyiAKVVMAVFGLSHTYNTKVGNDFiRGVSGGERKRVSIAEMVVAGAPLTAWDNST 345
                 155556999***************99999***************************987 PP

  == domain 2  score: 66.6 bits;  conditional E-value: 4.1e-21
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................ 79  
                  l++vs  +k+g+++a++G +GaGK+tLl +la+ ++     G++l++gk+l+     s++++ g+++q++ + ++ tvre+                
  CCE30059.1  885 LDHVSGWVKPGTLTALMGVSGAGKTTLLDALAQRTTMgvITGDMLVNGKPLDA----SFQRNTGYVQQQDLHLETATVRESlrfsamlrqpksvske 977 
                  6889999***************************9988899999*******99....************99999999*********99999886433 PP

                  HHHTC...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                  xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran   80 esdee...iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137 
                  e   +   +e+++s l+++++++ vv+  ++ L   q++ + +   l+ kpklll lDEpt+
  CCE30059.1  978 E---KyafVEEVISMLKMEDFANAVVGVPGQGLNVEQRKLLTIGVELAAKPKLLLfLDEPTS 1036
                  3...2667********************************************87649***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.1   5.2e-31   3.9e-28       5      90 ..     735     820 ..     732     822 .. 0.94
   2 !    8.1   0.1    0.0032       2.4      44      78 ..    1463    1500 ..    1447    1511 .. 0.64

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 5.2e-31
     PDR_CDR   5 pgyenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevlvfkrgkapk 90 
                 p y+    ++ vC v+Ga+pGq +VsGd++++++++ys+sh+wrnfgiliafl+ffl +y++++el+sa++s +e+lvf+rg+ p+
  CCE30059.1 735 PPYSPNIGNSWVCDVAGAIPGQYTVSGDAFIATNYEYSYSHVWRNFGILIAFLVFFLSTYFVTVELNSATSSVAEALVFRRGHVPA 820
                 56776668999************************************************************************986 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0032
     PDR_CDR   44 shlwrnfgiliaflif...flalyllatelisaekskg 78  
                   ++ rnfgi+++++++   f +l  +++ + +++k+++
  CCE30059.1 1463 GERFRNFGIMWGYILInigFAVLLYYLFRVKQWKKGSS 1500
                  4566*********9761114444445555555555544 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   1.7e-19   1.3e-16       1      81 []      73     163 ..      73     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 1.7e-19
  ABC_trans_N   1 eLartlsrqssssssssss.........e...sssedeeeed....se.FdlekwlknlreridrdgikprklGVvFknLtVeGvgsgadyqpTvgna 81 
                  eL r+++ +s++ s+ + +         +   ++            ++ Fdlekw++++++++ + g +  ++GV+++nL V+G+gs++++q Tvg+a
   CCE30059.1  73 ELVRIATALSRRGSNPAGQpspggqlgsSdenEP-------AcnpeNKdFDLEKWVRRFMDQMMAGGLEENSMGVSYRNLDVFGSGSALQLQDTVGSA 163
                  6899999988888888777766554332122233.......24456444******************9999************************986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.029        22      25      53 ..     187     215 ..     166     228 .. 0.82
   2 !   21.8   0.0   1.5e-07   0.00011      13      61 ..     875     923 ..     864     970 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.029
      AAA_25  25 lvkgllpagelallaGapgtGKttlaldl 53 
                  ++g+l  gel ++ G+pg+G +tl+  +
  CCE30059.1 187 SFDGFLSPGELLIVLGRPGSGCSTLLKTM 215
                 4679********************98655 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 1.5e-07
      AAA_25  13 adlaapppprrwlvkgllpagelallaGapgtGKttlaldlalavatGk 61 
                  +++ +p+++ + v g++  g+l++l+G +g+GKttl+  la  ++ G 
  CCE30059.1 875 IEIKGQPRRLLDHVSGWVKPGTLTALMGVSGAGKTTLLDALAQRTTMGV 923
                 568999999999******************************9988554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.012       9.3       1      65 [.     197     272 ..     197     290 .. 0.73
   2 !   19.2   0.0   1.5e-06    0.0011       2      78 ..     898     971 ..     897    1002 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
      AAA_33   1 lvllvGlpGsGKstlaerllkklg...........avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelark 65 
                 l+++ G pGsG stl++ ++ +l+           +  +s+ ++++  +g+ + +++  +++ + + +++ e+a++
  CCE30059.1 197 LLIVLGRPGSGCSTLLKTMCGELQglelgeqsnihYNGISQKNMMKEFKGEMVYNQEVDKHFPHLTVGQTLEFAAS 272
                 68999***************99997666666666666666666776666655555555555665666666566655 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.5e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrr.rlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildat 78 
                 + l G++G+GK+tl++ l++++++ +++ d l + +      q+ t y +   +   +l e+a+ + s +++++l+++
  CCE30059.1 898 TALMGVSGAGKTTLLDALAQRTTMGVITGDMLVNgKPLDASFQRNTGYVQ---QQDLHL-ETATVRESLRFSAMLRQP 971
                 5689**************************98883333344444444444...233344.778888888888888887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.057        42      10      45 ..     182     216 ..     178     238 .. 0.79
   2 !   20.5   0.1   6.7e-07    0.0005      10     145 ..     882    1035 ..     878    1063 .. 0.56

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.057
      AAA_16  10 eqLlsalervrsgrpelvllsGesGvGKsslvrell 45 
                 +q+l+ ++   s++ el+++ G +G+G s+l+++  
  CCE30059.1 182 RQILHSFDGFLSPG-ELLIVLGRPGSGCSTLLKTMC 216
                 56666677666665.89***************8765 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 6.7e-07
      AAA_16   10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql........esaipy..........salaqalareellrqllde 88  
                  ++Ll+ ++ + +++  l+ l G sG GK++l+++l+++ +   + +++g+   +        ++++ y          +++ +       + ++l++
  CCE30059.1  882 RRLLDHVSGWVKPG-TLTALMGVSGAGKTTLLDALAQRTT---MGVITGDMLVNgkpldasfQRNTGYvqqqdlhletATVRES----LRFSAMLRQ 970 
                  57777788777777.6999*****************6333...44555555555111111344444443222211111111111....223333333 PP

      AAA_16   89 aesaeleawrekleeala................avpelagaeasrllellkrllallsrderplvlvlDdlq 145 
                  ++s + e+         a                av  ++g++ +   ++l  + + l+ + + l+l+lD+  
  CCE30059.1  971 PKSVSKEEKY-------AfveevismlkmedfanAVVGVPGQGLNVEQRKLLTIGVELAAKPK-LLLFLDEPT 1035
                  4444444444.......2444555588999999988888888888888888888855554244.999999765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.027        20      22      42 ..     195     215 ..     186     239 .. 0.66
   2 !   17.6   0.1   3.3e-06    0.0024      22      43 ..     895     916 ..     885     919 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.027
      AAA_29  22 kgatlltGpsGsGKSTllDAi 42 
                  +  ++ G+ GsG STll  +
  CCE30059.1 195 GELLIVLGRPGSGCSTLLKTM 215
                 4467889**********9765 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 3.3e-06
      AAA_29  22 kgatlltGpsGsGKSTllDAiq 43 
                    t l+G sG+GK+TllDA++
  CCE30059.1 895 GTLTALMGVSGAGKTTLLDALA 916
                 34899***************86 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   1.6       6.7     5e+03     220     247 ..     542     573 ..     530     584 .. 0.51
   2 !   23.7  13.9   3.1e-08   2.3e-05     226     340 ..     623     791 ..     608     795 .. 0.80
   3 ?   -2.7   6.6       3.2   2.4e+03     249     294 ..    1209    1255 ..    1194    1264 .. 0.63
   4 !    6.2  12.4    0.0063       4.7     217     308 ..    1293    1386 ..    1267    1393 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 6.7
  ABC2_membrane_3 220 qlllill.lafgl...gipfgnlglllllfll 247
                      +++li++ ++fg+    ++f++ g++l++ +l
       CCE30059.1 542 VMALIIGsIFFGTpdaTVSFYGRGSVLFMAIL 573
                      22233332555555555555555555544444 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 3.1e-08
  ABC2_membrane_3 226 llafgl...gipfg..nlglllllfllfglayialgyllsslfknsetaqilifivil..llsgffggl.fpledlpsalkwifsiiPffapgl 311
                      ++af++   +++    + g ++l+fl+ ++++ ++++++ ++   ++t++++++i  +  l++++++g+ +p++ ++ +++wi +i+P f+ ++
       CCE30059.1 623 AVAFNVvlyFLSELrrEPGPFFLYFLITYISTMVMSAVFRTMAAATKTVSQAMSISGVlvLALVIYTGFaIPVPEMHPWFSWIRWINPVFYAFE 716
                      34444433223333477899*******************999999999988888877743566666666566*******************999 PP

  ABC2_membrane_3 312 gllrlitgdplwe................................................illsliilalfavvyl 340
                       l+   + +   +                                                ++++++il++f v++l
       CCE30059.1 717 ILVANEFHNR--NftcssivppyspnignswvcdvagaipgqytvsgdafiatnyeysyshVWRNFGILIAFLVFFL 791
                      9966633222..24477888899999999999****************************************99997 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.2
  ABC2_membrane_3  249 glayialgyllsslfknsetaqilifivil.llsgffgglfpledlp 294 
                       + + i+ g+++++ f +++++ + + +vi+ ++++  +++ +++++ 
       CCE30059.1 1209 LALGIFAGLFIGFTFFDAKSTKAGTQAVIFnTFMLTTIFSSVVQQMQ 1255
                       55667777777777766666666655555544666666555555554 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0063
  ABC2_membrane_3  217 yllqlllill.l..afglgipfg.nlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsii 304 
                       +++ +l++ + +  ++g  i+ +   gl+l++++  ++ +++++ ++ +++ ++ ta +++ ++ +l ++f+g+l + ++lp+++    ++ 
       CCE30059.1 1293 AFTAILIWAAsYypVIG--IQSSdRQGLVLVFVIQLFIYASSFAIMCQAAMPDAHTAGSVVNVLAILSIVFSGVLQTAQALPGFWVFMYRVS 1382
                       45667777775357888..88886778999999999999999************************9999999999********99999999 PP

  ABC2_membrane_3  305 Pffa 308 
                       Pf++
       CCE30059.1 1383 PFTY 1386
                       9986 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.074        55      99     129 ..     194     226 ..     172     239 .. 0.77
   2 !   17.3   0.0   4.6e-06    0.0035      87     125 ..     882     921 ..     861     961 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.074
                  T.SEEEEECSTTSSHHHHHHHHCTT--.---S- CS
  RsgA_GTPase  99 d.ktsvlvGqSGvGKStLinallpele.lktge 129
                    ++ +++G  G G StL++++ +el+ l+ ge
   CCE30059.1 194 PgELLIVLGRPGSGCSTLLKTMCGELQgLELGE 226
                  448899****************99863145555 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 4.6e-06
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                  ++ l++++ ++k   +++l+G SG+GK+tL++al++++++
   CCE30059.1 882 RRLLDHVSGWVKPgTLTALMGVSGAGKTTLLDALAQRTTM 921
                  4567888888888799******************998654 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.5   1.1e+03       2      18 ..     199     215 ..     198     259 .. 0.69
   2 !   17.8   0.0   5.1e-06    0.0038       3      55 ..     900     950 ..     899    1015 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.5
      AAA_18   2 lltGtpGvGKttlakeL 18 
                 ++ G pG+G +tl k  
  CCE30059.1 199 IVLGRPGSGCSTLLKTM 215
                 789*********98866 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 5.1e-06
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrlded 55 
                 l+G++G+GKttl ++L++r+ +gv+ +d++ ++ +l+  ++   +   + ++d
  CCE30059.1 900 LMGVSGAGKTTLLDALAQRTTMGVITGDMLVNGKPLDASFQR--NTGYVQQQD 950
                 89*****************999********999999999998..444444444 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.87   6.5e+02     106     185 ..     237     362 ..     187     372 .. 0.58
   2 !   15.9   0.0   8.7e-06    0.0065      26     201 ..     897    1068 ..     886    1084 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.87
                 TSEEEEEETTEEE-HHHHHHHHHCTT-STT..................................................CS-HHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................xxxxxxxxxxxxxxxxxxx RF
       SMC_N 106 kgeseykingkevtkkevsellesagiske..................................................lLSgGektLvalaLlfAiq 154
                 +++   +++g+ v ++ev + +++  + ++                                                    SgGe++ v++a +    
  CCE30059.1 237 QKNMMKEFKGEMVYNQEVDKHFPHLTVGQTlefaasvrtpqrriqgmsrveycqyiakvvmavfglshtyntkvgndfirGVSGGERKRVSIAEM---- 331
                 33333344444444444444444444444455555555555555555555555555555555555555555666666555677777777776643.... PP

                 CCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 155 kvkpaplyllDeidaaLDeknvkkvaellke 185
                  v  apl   D+    LD +   k+++ l+ 
  CCE30059.1 332 VVAGAPLTAWDNSTRGLDSATALKFVTSLRL 362
                 3556666666666666666666666666655 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 8.7e-06
                  EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--..BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk..skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk 120 
                  +ta++G  G+GK+ lldA+       + +++   + + l++    +++ + + ++v+     +d +l++ + + s++ +++  +  ++  ++k +  
  CCE30059.1  897 LTALMGVSGAGKTTLLDAL----A--QRTTMGVITGDMLVNGkpLDASFQRNTGYVQQ----QDLHLETATVRESLRFSAMLRQPKSVSKEEKYAFV 983 
                  799***************9....3..44468888888888875444555555666655....34443333333344444444444444444444555 PP

                  HHHHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHH CS
                  xxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  121 kevsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreem 201 
                  +ev ++l+++++           L   +++L+ + + +A   +kp+ l +lDe  + LD +   +++ +l++  ++ Q i  ++++  
  CCE30059.1  984 EEVISMLKMEDFANAvvgvpgqGLNVEQRKLLTIGVELA---AKPKLLLFLDEPTSGLDSQSSWAICAFLRKLADSGQAILCTIHQPS 1068
                  555555555555544333333389999999*99999987...68**************************************998865 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.059        44       3      27 ..     198     222 ..     196     240 .. 0.85
   2 !   14.0   0.1   3.7e-05     0.028       3      37 ..     898     929 ..     896     952 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.059
                 EEEEESTTCCHHHHHHHHHCT--SS CS
        cobW   3 tvltGflGsGKTtLlnhllenragl 27 
                 +++ G +GsG +tLl++++ + +gl
  CCE30059.1 198 LIVLGRPGSGCSTLLKTMCGELQGL 222
                 6899**************9665655 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 3.7e-05
                 EEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-S CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklavivNefg 37 
                 t l G  G+GKTtLl +l ++     + vi++++ 
  CCE30059.1 898 TALMGVSGAGKTTLLDALAQR---TTMGVITGDML 929
                 7899**************987...899*****996 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00034      0.26       1      23 [.     897     917 ..     897     979 .. 0.79
   2 ?    3.5   0.0     0.072        54     252     273 ..    1021    1041 ..    1011    1070 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
      AAA_21   1 lnvliGpNgsGKSnLLdaldlla 23 
                 l++l G  g+GK++LLdal   +
  CCE30059.1 897 LTALMGVSGAGKTTLLDALA--Q 917
                 6999***************3..3 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.072
      AAA_21  252 lralkkgsllliDEpEngLHPk 273 
                  l+a +k  ll++DEp +gL+ +
  CCE30059.1 1021 LAAKPK-LLLFLDEPTSGLDSQ 1041
                  445555.8***********974 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.13        98       6      29 ..     196     219 ..     193     246 .. 0.83
   2 !   10.6   0.0    0.0007      0.52       5      29 ..     895     919 ..     892     964 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.13
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                  +l+v G +G+G +tll+++  +l
  CCE30059.1 196 ELLIVLGRPGSGCSTLLKTMCGEL 219
                 5799**************987666 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0007
      AAA_22   5 agilvvtGesGtGKTtllrrlleql 29 
                  ++++++G sG+GKTtll  l+++ 
  CCE30059.1 895 GTLTALMGVSGAGKTTLLDALAQRT 919
                 57899**************999875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.016        12       3      22 ..     199     218 ..     197     245 .. 0.85
   2 !    7.7   0.1    0.0049       3.7       3      22 ..     899     918 ..     897     944 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.016
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 +++Grp +G StL+++++ge
  CCE30059.1 199 IVLGRPGSGCSTLLKTMCGE 218
                 689***************97 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0049
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 a++G + +GK+tL+ al ++
  CCE30059.1 899 ALMGVSGAGKTTLLDALAQR 918
                 899**************987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.25   1.9e+02      17      38 ..     194     215 ..     186     221 .. 0.83
   2 ?   10.2   0.1    0.0006      0.45      18      44 ..     895     921 ..     886    1009 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.25
      AAA_30  17 gdrvavltGpAGtGKttalkal 38 
                 +  + ++ G++G+G +t+lk++
  CCE30059.1 194 PGELLIVLGRPGSGCSTLLKTM 215
                 445999*************975 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0006
      AAA_30  18 drvavltGpAGtGKttalkalreawea 44 
                   +++l G+ G+GKtt+l al++  + 
  CCE30059.1 895 GTLTALMGVSGAGKTTLLDALAQRTTM 921
                 45899****************886664 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.033        25       2      25 ..     197     220 ..     196     231 .. 0.86
   2 ?    8.9   0.4    0.0018       1.3       3      27 ..     898     922 ..     896     933 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.033
                 CEEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawa 25 
                 l+i+ G++GsG +tLl+ ++ +++
  CCE30059.1 197 LLIVLGRPGSGCSTLLKTMCGELQ 220
                 689**************9998876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0018
                 EEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaeg 27 
                  +l G +G GKTtLl  la+    g
  CCE30059.1 898 TALMGVSGAGKTTLLDALAQRTTMG 922
                 6799**************9976655 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.61   4.6e+02       1      21 [.     201     222 ..     201     267 .. 0.74
   2 ?   10.5   0.0    0.0008       0.6       1      31 [.     901     930 ..     901     995 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.61
                 EE-TTSSHHHHHHHHHHHH.TE CS
      AAA_17   1 lGgPGsGKgtqceklveky.gf 21 
                 lG PGsG +t+++++  ++ g+
  CCE30059.1 201 LGRPGSGCSTLLKTMCGELqGL 222
                 699*********9998776444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0008
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllr 31 
                 +G+ G+GK+t+++ l+++    +++ Gd+l 
  CCE30059.1 901 MGVSGAGKTTLLDALAQRTTMGVIT-GDMLV 930
                 59*****************999998.99885 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.18   1.4e+02       2      38 ..     199     244 ..     198     262 .. 0.70
   2 ?    8.0   0.0    0.0049       3.6       3      25 ..     900     922 ..     898     991 .. 0.85
   3 ?   -2.2   0.0         7   5.2e+03      63      78 ..    1150    1172 ..    1122    1193 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.18
                 EEESSTTSSHHHHHHHHHHHH.........THEEEEEETTTCSSSS CS
         AAA   2 llyGppGtGKTllakavakel.........gvefleisgsellsky 38 
                 ++ G pG G ++l k ++ el         ++++  is +++++++
  CCE30059.1 199 IVLGRPGSGCSTLLKTMCGELqglelgeqsNIHYNGISQKNMMKEF 244
                 789*****************84444433333555555555555444 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0049
                 EESSTTSSHHHHHHHHHHHHTHE CS
         AAA   3 lyGppGtGKTllakavakelgve 25 
                 l+G  G GKT+l  a+a+ + + 
  CCE30059.1 900 LMGVSGAGKTTLLDALAQRTTMG 922
                 89****************97543 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 7
                  EEETGGGHHHHH.......TTCC CS
         AAA   63 fiDEidalaksr.......sgse 78  
                  ++ E+da++ ++       +g++
  CCE30059.1 1150 VMQEMDAIHAEKqheapaeDGTS 1172
                  6899****999855444443334 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   0.00012     0.088      21      41 ..     897     917 ..     893     991 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00012
      AAA_23  21 ltlItGpNGaGKTTildAikl 41 
                 lt++ G  GaGKTT+ldA+  
  CCE30059.1 897 LTALMGVSGAGKTTLLDALAQ 917
                 8999**************975 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.025        19       2      50 ..     199     247 ..     198     253 .. 0.75
   2 ?    4.5   0.0      0.06        45       3      36 ..     900     931 ..     898     953 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.025
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvys.rnpeddfwdgYtgq 50 
                   ++ G++g G Stl k+++ +l++   l +++++ + + +++++++ ++g+
    CCE30059.1 199 IVLGRPGSGCSTLLKTMCGELQGLE-LGEQSNIHYnGISQKNMMKEFKGE 247
                   689******************9554.444455544377777888887776 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.06
  RNA_helicase   3 lyGpsgeGKStlakeLakallkklklkkkdsvys 36 
                   l G sg GK+tl + La++ +  ++ ++ d ++ 
    CCE30059.1 900 LMGVSGAGKTTLLDALAQRTT--MGVITGDMLVN 931
                   7899************99877..44455455544 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       9.4   7.1e+03       4      19 ..     200     215 ..     198     281 .. 0.60
   2 ?   10.9   0.3   0.00055      0.41       3      24 ..     899     920 ..     897     929 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 9.4
      AAA_28   4 itGgestGKTtlleaL 19 
                 ++G +++G +tll+ +
  CCE30059.1 200 VLGRPGSGCSTLLKTM 215
                 6788999999998755 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00055
      AAA_28   3 vitGgestGKTtlleaLaargy 24 
                 +++G +++GKTtll aLa+r +
  CCE30059.1 899 ALMGVSGAGKTTLLDALAQRTT 920
                 6899**************9944 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.041        30      18      41 ..     835     858 ..     826     860 .. 0.77
   2 ?    3.7   0.0     0.095        71      66      89 ..    1028    1051 ..    1021    1052 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.041
     SbcCD_C  18 dedgkekelsrssgtlSGGekqfl 41 
                 ++d + k +s++s+t SGGek+++
  CCE30059.1 835 APDAAAKATSDESATASGGEKSKA 858
                 45666777*************876 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.095
     SbcCD_C   66 lvfLDEAFsklDeesiatllelle 89  
                  l+fLDE  s+lD++s+ ++ ++l+
  CCE30059.1 1028 LLFLDEPTSGLDSQSSWAICAFLR 1051
                  79************9988877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 1.05u 0.28s 00:00:01.33 Elapsed: 00:00:00.45
# Mc/sec: 10065.05
//
Query:       CCE30060.1  [L=860]
Description: probable carnitine acetyl transferase FacC [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.3e-207  689.4   0.0   1.8e-206  687.3   0.0    1.7  1  Carn_acyltransf  Choline/Carnitine o-acyltransferase


Domain annotation for each model (and alignments):
>> Carn_acyltransf  Choline/Carnitine o-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  687.3   0.0    1e-210  1.8e-206       1     587 []      77     741 ..      77     741 .. 0.93

  Alignments for each domain:
  == domain 1  score: 687.3 bits;  conditional E-value: 1e-210
                      S-------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHSSHT-STTTHHHHHHHHTTT--S-HHHHTBEEEE-GCCC CS
  Carn_acyltransf   1 LprLPvPkLedTleryleslkpllseeelekteklveeflkgeGpkLqerLraekekktsknwledwWedyaYleyrdplvlnsnpfllleddp 94 
                      Lp+LP+P L +T+++yle+lkpl+s+ e ++te++v++fl+++Gp Lqe+L+++++   +++++e++W+d +Yl+ ++p+vln npf+lleddp
       CCE30060.1  77 LPKLPIPHLASTCDKYLEALKPLQSPRERAETEHAVRDFLSTDGPDLQEKLKKYARG--KTSYIEQFWYD-SYLNFDNPVVLNLNPFFLLEDDP 167
                      9**************************************************888666..67*********.*********************** PP

                      CTSTCHHHHHHHHHHHHHHHHHHHHHHTT-S--TE.EETEE---GGGGGSSSEEEE--SSS-EEEEE--TSS---EEEEEETTEEEEEECECEC CS
  Carn_acyltransf  95 dpkeknqqlkraAklilsalkfkkllrreelepdvikkgkplcmsqykrlfnttRiPgkekDklvkykkedkesrhivVlrkgqfYkvdvledd 188
                      + +++n+q++raA+l++sal+f++++r+eel+pd++ kg+plcm+q++rlf+t+R+P+++  ++v+    d+e++hivV+++gq+Y++dvl++d
       CCE30060.1 168 T-PARNNQVTRAASLVVSALEFIRAVRKEELPPDTV-KGQPLCMYQFSRLFGTARVPTEHGCQIVQ----DPEAKHIVVICHGQIYWFDVLDQD 255
                      *.8888888*************************77.59******************955555554....788******************556 PP

                      TTEE--HHHHHHHHHHHHHHHHCCG....----GGGGGGS-HHHHHHHHHHHCC-TCH.HHHHHHHHHCSS-EEEE----SS---HCCHHHHHH CS
  Carn_acyltransf 189 ggrllspaelekqleeIlsdsekees...aeepvgvlTtenRdewakareellksekk.NkeslelIesalfvvcLDdespededeeelakqll 278
                       + ++++++++ +l+ I +d+ +++    a+ ++gvl+tenR++w+ +r+ l ++ ++ N+++l++++salf +cLD ++p+d     l++++l
       CCE30060.1 256 SDVIMTEKDIAVNLRTITEDAAQTPIqdaAKGALGVLSTENRKTWSGLRDILTRDAESnNADCLNIVDSALFALCLDYTEPQDVA--ALCQNML 347
                      6699**************666666557889999******************99888778*********************75555..5****** PP

                      CT...........TCGC--TTBSEEEEE-TTS-EEEEE-STT--HHHHHHHHHHHHHCCHCTTTT--S...........----S-SSS...... CS
  Carn_acyltransf 279 hg...........sgtnRWfDKslqlivtknGkaglnfEHswaDgtvvlrlvedvltdsilkeakekn...........eekssssees..... 345
                      +g           ++tnRW+DK +q+iv+knG+ag+nfEH+++Dg++vlr+++dv+td+il++a+++n                +++++     
       CCE30060.1 348 CGtsevkngvqigTCTNRWYDK-MQIIVCKNGSAGINFEHTGVDGHTVLRFASDVYTDTILRFARTINgqaptlwtstsP----DPSKRdpesf 436
                      *8889999999*9*********.*************************************************99965431....2222235568 PP

                      ......-EEE-----HHHHHHHHHHHHHHHHHHCCEEEEEEEETS--HHHHCCCT--HHHHHHHHHHHHHHHHHSS---EEEEEE-TTSTT--E CS
  Carn_acyltransf 346 ...lpepeklefkldeelkeaieeaetrldklisdldlkvlefkeyGksfikkfklspDafiQmalQlAyyrlygklaatyEsastrkFrhGRt 436
                         +++p+kle+++ +el+ a+++aetrl++li+++++++l+f+ yGk+fi+++++spDaf+Qma+Q+Ayy lyg++++tyE+a+t+ + hGRt
       CCE30060.1 437 gdvNTTPRKLEWDMVPELSIAVRFAETRLADLIEQHEFQCLDFSAYGKNFITSMGFSPDAFVQMAFQAAYYGLYGRVECTYEPAMTKFYLHGRT 530
                      8898899*************************************************************************************** PP

                      EEEE---HHHHHHHHHHHSSCTHCCHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHT.--HH......................... CS
  Carn_acyltransf 437 EtirsvteeslafvkamdskasdeeklellrkAvkahskltkeaakGkGvdrHLfaLkllakel.eseg......................... 504
                      E++r+v+++s++fv+++  ++s e+k+e+lr+A+++h+++tke+ k++G+drHL+aL ++++++ + ++                         
       CCE30060.1 531 EAVRTVSKDSVDFVQTFWADTSVEHKIEALRRACQKHTARTKECLKAEGCDRHLYALLCVWQKHvD-DEvdgglpssvgagssdcspggspgkk 623
                      *****************88999****************************************9963.335789999999999999999999999 PP

                      ......................................SS.-HHHHSHHHHHCT--SEEEEE...SSSEEEES--SSTT-EEEEEEEETC.EEE CS
  Carn_acyltransf 505 ......................................eelpelFkdplykklnnwrLsTSqlsspalkgfGfgpvvpdGyGigYiikddsisf 560
                                                            ++lp +F+d +++kln+++LsTS++++p+l+ fGfgp++ dG+GigYiik+dsis+
       CCE30060.1 624 asdassepplqvskldgecsersspssssrdthshprpRPLPFIFADGGWDKLNTTVLSTSNCGNPSLRQFGFGPTSGDGFGIGYIIKNDSISI 717
                      999999999999999999999888888888888888888888**************************************************** PP

                      EEEETCTTS--HHHHHHHHHHHHHHHH CS
  Carn_acyltransf 561 visskkksetsserfaeaLeealedik 587
                      ++ssk   +++++rf+++Le++l +i+
       CCE30060.1 718 CVSSK---HRQTKRFVDTLESYLLEIR 741
                      ****7...89**************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 5946.31
//
Query:       CCE30061.1  [L=413]
Description: uncharacterized protein CPUR_03909 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.033   15.1   0.0       0.09   13.7   0.0    1.8  1  EphA2_TM         Ephrin type-A receptor 2 transmembrane domai
      0.047   13.4   1.2      0.047   13.4   1.2    1.8  2  Gly-zipper_YMGG  YMGG-like Gly-zipper


Domain annotation for each model (and alignments):
>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     1e-05      0.09       1      37 [.     296     342 ..     296     391 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1e-05
    EphA2_TM   1 iiaaavaglvllvilvilvlvlvrrrsknrkqksdl..........k 37 
                 i++++v+g+  lv++v+++++ +rrr+++ +  ++           +
  CCE30061.1 296 IVGGVVGGVASLVAVVLITFFYLRRRKRRTAGTTEAppssrplmqsT 342
                 68899999999999999888888777776666655455544444330 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   1.5      0.82   7.4e+03      33      37 ..      14      18 ..       6      20 .. 0.45
   2 ?   13.4   1.2   5.3e-06     0.047      25      43 ..     287     305 ..     283     307 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.82
                     XXXXX CS
  Gly-zipper_YMGG 33 AaaGa 37
                     A +Ga
       CCE30061.1 14 ASIGA 18
                     33333 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 5.3e-06
                      XXXXXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG  25 ggkGAaiGAaaGalaGgai 43 
                      + +G+ iGA +G+++Gg++
       CCE30061.1 287 NNRGTPIGAIVGGVVGGVA 305
                      4579999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1109  (0.0618551); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 3226.05
//
Query:       CCE30062.1  [L=323]
Description: probable ribose-phosphate diphosphokinase catalytic chain I [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-44  150.5   2.2    1.5e-37  129.4   0.8    2.4  2  Pribosyl_synth   Phosphoribosyl synthetase-associated domain
      1e-42  144.7   0.6    3.3e-42  143.1   0.1    2.0  2  Pribosyltran_N   N-terminal domain of ribose phosphate pyroph
    2.5e-16   59.6   0.4    5.3e-16   58.5   0.4    1.5  1  Pribosyltran     Phosphoribosyl transferase domain
     0.0009   18.7   0.2     0.0018   17.8   0.2    1.4  1  UPRTase          Uracil phosphoribosyltransferase
  ------ inclusion threshold ------
      0.042   13.3   0.0      0.087   12.3   0.0    1.5  1  DUF4392          Domain of unknown function (DUF4392)
      0.078   13.0   2.2       0.16   11.9   2.2    1.5  1  Chlorosome_CsmC  Chlorosome envelope protein C


Domain annotation for each model (and alignments):
>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.5e-07   0.00045       3      36 ..     168     201 ..     166     207 .. 0.92
   2 !  129.4   0.8   4.9e-41   1.5e-37      75     183 ..     210     318 ..     202     319 .. 0.98

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.5e-07
                     GGEEEEESSGGGHHHHHHHHHHTT-EEEEE---- CS
  Pribosyl_synth   3 rnavivakspgsakkatsyaerlrlglavihGeq 36 
                      n+viv+ + g ak+at+ a+rl++g a+ih e+
      CCE30062.1 168 ENCVIVSPDAGGAKRATAIADRLNVGFALIHKER 201
                     69*****************************996 PP

  == domain 2  score: 129.4 bits;  conditional E-value: 4.9e-41
                     --EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--HHHHHT-TTEEEE--HHHHHHH CS
  Pribosyl_synth  75 ltvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvlathGllssdaprlleesaidevvvtntipheiqklrcskiktvdislllaea 169
                     + +vGdv+ ++ai+vdd+ d   ++v+aae+++++Ga ++y+++thG+ls +a +++++s++  +vvtnt+p   +  rcsk+k +d+s  laea
      CCE30062.1 210 MVLVGDVQDKVAILVDDMADTCGTLVKAAETVNQHGAKQVYAIVTHGILSGKAIENINASCLASLVVTNTVPLGDKTERCSKLKVIDVSATLAEA 304
                     789******************************************************************************************** PP

                     HHHHHHT---TT-S CS
  Pribosyl_synth 170 irrihngesmsylf 183
                     irr hnges+sylf
      CCE30062.1 305 IRRTHNGESVSYLF 318
                     *************9 PP

>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.1   0.1   1.1e-45   3.3e-42       1     116 []       9     126 ..       9     126 .. 0.98
   2 ?   -1.0   0.0      0.56   1.7e+03      59      87 ..     226     254 ..     201     275 .. 0.77

  Alignments for each domain:
  == domain 1  score: 143.1 bits;  conditional E-value: 1.1e-45
  Pribosyltran_N   1 lkifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqsls.kpvndnlmelllmidalrrasakritaViPylgysrq 94 
                     +k+++g+s+++L+ k+a+rlgv+++++   +++++E++v+i esvr++dvfi+qs++  +vnd lmell+mi+a+r+asa+ritaViP ++y+rq
      CCE30062.1   9 IKLISGTSHRALSTKVASRLGVQIANTMSLNYSNQETSVSIGESVRDEDVFILQSTApGDVNDGLMELLIMIHACRTASARRITAVIPSFPYARQ 103
                     699*****************************************************9688*********************************** PP

  Pribosyltran_N  95 drk.ksrepisaklvaklLeaaG 116
                     d+k ksr+pisakl+a++L+ +G
      CCE30062.1 104 DKKdKSRAPISAKLIANMLQVSG 126
                     ***999**************998 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.56
  Pribosyltran_N  59 pvndnlmelllmidalrrasakritaViP 87 
                     ++ d+   l+  ++++++  ak++ a++ 
      CCE30062.1 226 DMADTCGTLVKAAETVNQHGAKQVYAIVT 254
                     45555666777788888889999988875 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.4   1.8e-19   5.3e-16      19     124 ..     158     255 ..     153     278 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 1.8e-19
                   TEEEEEE--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-B CS
  Pribosyltran  19 aaeileeyngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgp 115
                   +++i+++ + ++ v+v ++ gG  +a+++ad+L+v +a + k++ rp++ + ++        l +d+ +k  ++VDD+ dt gTl +a+e +  +g+
    CCE30062.1 158 LRWIRDNLESENCVIVSPDAGGAKRATAIADRLNVGFALIHKERPRPNVVGRMV--------LVGDVQDKVAILVDDMADTCGTLVKAAETVNQHGA 246
                   6788888999*******************************************9........9********************************** PP

                   SEEEEEEEE CS
  Pribosyltran 116 eevriavlv 124
                   ++v ++v +
    CCE30062.1 247 KQVYAIVTH 255
                   ***999976 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   5.9e-07    0.0018      94     182 ..     192     279 ..     179     287 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.9e-07
     UPRTase  94 vghlglqreeetlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefpkvkvvtaa 182
                 vg +++++e    + v     L  +++++ ++l+D +  T g++++a +++ ++g+++   +v   + s ++++++ ++     vvt +
  CCE30062.1 192 VGFALIHKERPRPN-VVGRMVLVGDVQDKVAILVDDMADTCGTLVKAAETVNQHGAKQVYAIVTHGILSGKAIENINASCLASLVVTNT 279
                 55555555554433.3334457778999*****************************9999999*********9999887766666655 PP

>> DUF4392  Domain of unknown function (DUF4392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.9e-05     0.087      26     152 ..      82     208 ..      70     233 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.9e-05
     DUF4392  26 aaeslshakksvlItTGFpvhpahsppeEtDGplGAialaraLqalgkkvvivtdelnekiveaaveqgvlkte.vpll..elqdrsaeaaivfltkdg 121
                 a+++ s  +   +++  Fp + ++  ++ +  p++A ++a +Lq  g++ vi +d l++++++ ++++ v +    p +   ++d+ ++ + v++  d+
  CCE30062.1  82 ACRTASARR-ITAVIPSFPYARQD-KKDKSRAPISAKLIANMLQVSGCNHVITMD-LHASQIQGFFNVPVDNLYaEPSVlrWIRDNLESENCVIVSPDA 177
                 566666666.78888999999987.4777778*******************9999.9999999999995555444333346777777777777777776 PP

     DUF4392 122 dkkeaeaeelleklkp.dhliaiErpGraadG 152
                  ++ + a+++ ++l+   +li  Erp ++  G
  CCE30062.1 178 GGA-KRATAIADRLNVgFALIHKERPRPNVVG 208
                 666.6677777776666788888888777665 PP

>> Chlorosome_CsmC  Chlorosome envelope protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.2   5.5e-05      0.16      73     132 ..     212     270 ..     205     277 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.5e-05
  Chlorosome_CsmC  73 vvgetidrvaitvkdvsraaGelysdavknvenvtdnaakavGdvgvsasevvknvagsf 132
                      +vg+  d+vai v d++ + G+l + a+++v++   +   a+   g+ + +++ n+++s 
       CCE30062.1 212 LVGDVQDKVAILVDDMADTCGTLVK-AAETVNQHGAKQVYAIVTHGILSGKAIENINASC 270
                      699*******************975.7899999999999999999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2719.10
//
Query:       CCE30063.1  [L=438]
Description: uncharacterized protein CPUR_03911 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00011   21.9   1.8       0.11   12.2   0.1    2.5  2  Adeno_E3_CR2     Adenovirus E3 region protein CR2
     0.0004   21.2   0.0       0.21   12.5   0.0    2.6  2  EphA2_TM         Ephrin type-A receptor 2 transmembrane domai
  ------ inclusion threshold ------
      0.015   14.1   0.0      0.076   11.7   0.0    1.9  2  Herpes_gE        Alphaherpesvirus glycoprotein E
      0.023   14.4   0.3      0.023   14.4   0.3    2.9  3  Gly-zipper_YMGG  YMGG-like Gly-zipper
      0.024   14.1   9.5       0.13   11.7   1.1    2.6  2  SKG6             Transmembrane alpha-helix domain
       0.05   14.0   0.5       0.05   14.0   0.5    2.0  2  DUF1180          Protein of unknown function (DUF1180)
       0.16   11.9   0.7        1.8    8.5   0.2    2.2  2  Syndecan         Syndecan domain
        9.1    6.0   7.1        2.3    8.0   0.2    2.7  3  Trp_oprn_chp     Tryptophan-associated transmembrane protein 


Domain annotation for each model (and alignments):
>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.3   0.00084       1.9       4      33 ..     252     281 ..     251     284 .. 0.71
   2 !   12.2   0.1   5.1e-05      0.11       4      23 ..     381     400 ..     380     406 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00084
  Adeno_E3_CR2   4 stiaIivaVvvGlaiIiicmlyYaCcYrkh 33 
                   ++++++v+ v+ l+ +++  l Y  ++++ 
    CCE30063.1 252 AIVGGVVGGVASLVSVVLITLFYLRRRKRR 281
                   578999988888888887777776666654 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.1e-05
  Adeno_E3_CR2   4 stiaIivaVvvGlaiIiicm 23 
                   +++++++a+ +Gl+iI++c+
    CCE30063.1 381 AIVGGVAAIGAGLLIIFFCL 400
                   689****************6 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   9.2e-05      0.21       1      37 [.     253     297 ..     253     336 .. 0.66
   2 !    6.0   0.0    0.0097        22       4      34 ..     381     411 ..     379     430 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.2e-05
    EphA2_TM   1 iiaaavaglvllvilvilvlvlvrrrsknrkqksdl........k 37 
                 i++++v+g+  lv++v+++l+ +rrr+++ +  ++         +
  CCE30063.1 253 IVGGVVGGVASLVSVVLITLFYLRRRKRRTAGTTEAppssrplmQ 297
                 688999999999998888888886666666655544554444430 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0097
    EphA2_TM   4 aavaglvllvilvilvlvlvrrrsknrkqks 34 
                 a+v+g+  + + ++++++++rrr+++ +   
  CCE30063.1 381 AIVGGVAAIGAGLLIIFFCLRRRKSRTAGTG 411
                 5677777777777777777755555544443 PP

>> Herpes_gE  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.4e-05     0.076     319     412 ..     226     320 ..     213     339 .. 0.68
   2 ?   -0.3   0.0      0.16   3.6e+02     350     377 ..     381     408 ..     364     426 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX CS
   Herpes_gE 319 PqrdedeaestkskeiappnngtsraalllaavliaalllvllglsalvcltkrrrrkkrrvksrlsdeaptYirlpvsdl.ladvseDseeeed 412
                 P++   +  + +   ++++n gt ++a+ ++ v + a l++++++  +    ++rr + +   +  s   ++ +  p+  +  ++ s+Ds+ ++ 
  CCE30063.1 226 PKTSRSSGGDSSEIDMGRNNRGTPIGAIVGGVVGGVASLVSVVLITLFYLRRRKRRTAGTTEAPPSSRPLMQSTASPEMSMaQNQASSDSNPNDG 320
                 555555555666667789999********************998887776666666666654555555556666666666655566777765443 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.16
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Herpes_gE 350 avliaalllvllglsalvcltkrrrrkk 377
                 a++++++ + +++l+++ cl +r+ r +
  CCE30063.1 381 AIVGGVAAIGAGLLIIFFCLRRRKSRTA 408
                 4455555555555555555555555544 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.4       2.3   5.2e+03      32      38 ..      13      19 ..       6      20 .. 0.52
   2 ?   14.4   0.3     1e-05     0.023      25      43 ..     244     262 ..     235     264 .. 0.82
   3 ?    0.4   1.4      0.25   5.6e+02      28      34 ..     381     392 ..     353     393 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.3
                     XXXXXXX CS
  Gly-zipper_YMGG 32 GAaaGal 38
                     +A +Ga+
       CCE30063.1 13 MASIGAA 19
                     4444443 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1e-05
                      XXXXXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG  25 ggkGAaiGAaaGalaGgai 43 
                      + +G+ iGA +G+++Gg++
       CCE30063.1 244 NNRGTPIGAIVGGVVGGVA 262
                      4579999999999999976 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.25
                      X.....XXXXXX CS
  Gly-zipper_YMGG  28 G.....AaiGAa 34 
                            AaiGA+
       CCE30063.1 381 AivggvAAIGAG 392
                      043344555554 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   1.8    0.0031       6.9      11      38 .]     252     279 ..     244     279 .. 0.88
   2 ?   11.7   1.1   5.7e-05      0.13      16      38 .]     382     404 ..     380     404 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0031
        SKG6  11 aIavaVaVPVaViiivLlailifvrRRk 38 
                 aI+ +V+ +Va  + v+l+ l+  rRRk
  CCE30063.1 252 AIVGGVVGGVASLVSVVLITLFYLRRRK 279
                 78889999***9999999999999*997 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 5.7e-05
        SKG6  16 VaVPVaViiivLlailifvrRRk 38 
                 ++ +Va+i + Ll+i++  rRRk
  CCE30063.1 382 IVGGVAAIGAGLLIIFFCLRRRK 404
                 6669******************8 PP

>> DUF1180  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.073   1.6e+02      67     131 ..     218     282 ..     192     284 .. 0.57
   2 ?   14.0   0.5   2.2e-05      0.05       4     123 ..     263     404 ..     260     409 .. 0.54

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.073
     DUF1180  67 ngsspragsaad.aggslavvpelssntd.kpmtlqrallvlvvvsaavivylvvRtvrlrrrnrkt 131
                 ++s   a++++  ++g+++   ++  n++  p   + +  v+ +v+++v  + ++  + lrrr+r+t
  CCE30063.1 218 SKSIISASPKTSrSSGGDSSEIDMGRNNRgTPIG-AIVGGVVGGVASLV-SVVLITLFYLRRRKRRT 282
                 4444444444333455555555565444403333.33333444454444.44556677788888876 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2.2e-05
     DUF1180   4 lLalvlLLlllLaasaadasralspaasspeaepPlppgataaespgkataieaksaqaaeggngsspragsaad........................ 78 
                 +L +v+L++l+      + +r ++ + ++p +++Pl  ++ta  sp+ + a +++s+ ++ ++   s ra+sa+                         
  CCE30063.1 263 SLVSVVLITLFY---LRRRKRRTAGTTEAPPSSRPLM-QSTA--SPEMSMAQNQASSDSNPNDGSESLRASSASAqqqqlgvsiitvakytswhdvlgl 355
                 688888888887...4555566666777777778883.3444..4666666555555554444334445555555344556666666666666666666 PP

     DUF1180  79 .aggslavvp....elssntdkpmtlqrallvlvvvsaavivylvvRtvr 123
                  +ggs+ v +    +l++ ++k    + +  v+ + ++++i+++ +R  +
  CCE30063.1 356 sGGGSD-VGSsggdNLAKDSSKTPVEAIVGGVAAIGAGLLIIFFCLRRRK 404
                 422222.2223555555555544442333345555566667777777544 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0008       1.8       9      36 ..     250     277 ..     245     282 .. 0.76
   2 ?    1.2   0.0      0.16   3.6e+02      12      36 ..     382     404 ..     375     411 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0008
    Syndecan   9 laaviggvvvgllfaillvlflvYRmrK 36 
                 + a++ggvv g+  ++ +vl+ ++ +r+
  CCE30063.1 250 IGAIVGGVVGGVASLVSVVLITLFYLRR 277
                 5789999998888888888877776664 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.16
    Syndecan  12 viggvvvgllfaillvlflvYRmrK 36 
                 + +g+v++ + a ll++f   R rK
  CCE30063.1 382 I-VGGVAA-IGAGLLIIFFCLRRRK 404
                 4.444444.4555666666666555 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.74   1.7e+03       2      26 ..       6      30 ..       5      41 .. 0.61
   2 ?    1.0   0.1      0.15   3.3e+02     118     138 ..     248     268 ..     211     305 .. 0.57
   3 ?    8.0   0.2     0.001       2.3     108     140 ..     367     399 ..     305     409 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.74
  Trp_oprn_chp  2 lllalgAallllasrltWvtvtvsd 26
                  +l+a++A++ ++a++++ v ++++ 
    CCE30063.1  6 VLGAASAMASIGAASRNLVATQSRV 30
                  4566666666666666665555544 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.15
  Trp_oprn_chp 118 wpvlalaggvllllagvllll 138
                    p+ a++ggv+  +a+++ ++
    CCE30063.1 248 TPIGAIVGGVVGGVASLVSVV 268
                   344444444444444433322 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.001
  Trp_oprn_chp 108 saaaaveltawpvlalaggvllllagvllllra 140
                   + + a + ++ pv a++ggv+++ ag+l++   
    CCE30063.1 367 GDNLAKDSSKTPVEAIVGGVAAIGAGLLIIFFC 399
                   2233333556******************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3246.80
//
Query:       CCE30064.1  [L=460]
Description: uncharacterized protein CPUR_03912 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0016   17.8   1.1     0.0029   17.0   1.1    1.4  1  SKG6             Transmembrane alpha-helix domain
  ------ inclusion threshold ------
       0.42   10.6   9.6       0.55   10.2   9.6    1.2  1  TFIIA            Transcription factor IIA, alpha/beta subunit
        2.2    8.1   4.3          5    7.0   4.3    1.6  1  Adeno_E3_CR2     Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.1   4.8e-07    0.0029       7      38 .]     271     302 ..     266     302 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.8e-07
        SKG6   7 sntvaIavaVaVPVaViiivLlailifvrRRk 38 
                 +   aI+ +V+ +Va+i + Ll+i++  rRR+
  CCE30064.1 271 TPVGAIVGGVVGGVAAIGAGLLIIFFCLRRRN 302
                 55679999***********************7 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   9.6   9.2e-05      0.55     111     232 ..     305     445 ..     227     459 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.2e-05
       TFIIA 111 ataatfslpakleppvqipa..gvtlqtasg.qlykvnv...qasgaqqiaaqplqqvvqq..sqgsaaqssvaalqaq.sqqaqalaepqqqlekq.. 198
                 ++ +t+++p++++p++q +a  g+   + +    y ++     ++ ++++a++++  +     + g  +q s+ +++++ s+ +   +  +++ ++   
  CCE30064.1 305 TAGTTETPPSTIQPSMQPMAspGMPMTQNRDpAFYDSHSnrgSKPLQTYLASAHQYPNATPppQDGYFSQPSIDSSSPTaSKITDFRISHMTA-SPTpt 402
                 444555555555554444443322211111122222222222222233333222222222134334444444443333321111111111111.11123 PP

       TFIIA 199 ...........qqqqqqqqqqqqqq.qvqqqqqeesqqaqqasqeq 232
                            qq++ qq+q   +q  ++qqqq++  q++q+   q
  CCE30064.1 403 smdaygapvpgQQPHAQQNQSGGSQaVQDQQQQQQRIQQHQP---Q 445
                 444455555544444444444444422222222211111111...1 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.3   0.00083         5       5      23 ..     280     298 ..     276     299 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00083
  Adeno_E3_CR2   5 tiaIivaVvvGlaiIiicm 23 
                    +++++a+ +Gl+iI++c+
    CCE30064.1 280 VVGGVAAIGAGLLIIFFCL 298
                   69****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:01.48
# Mc/sec: 937.98
//
Query:       CCE30065.1  [L=141]
Description: uncharacterized protein CPUR_03913 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-07   28.8   0.0    9.5e-07   28.3   0.0    1.2  1  PIF1      PIF1-like helicase
     0.0013   18.4   0.0     0.0017   18.1   0.0    1.3  1  AAA_30    AAA domain
  ------ inclusion threshold ------
      0.045   14.1   0.0      0.053   13.9   0.0    1.2  1  AAA_19    AAA domain


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.6e-10   9.5e-07      57     118 ..      67     128 ..      61     138 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.6e-10
                 ESSHHHHHCC.TSEECHHHHT-TTSSS-HH.HHHHHTSCCCHHHHHC-SEEEEECGGGSBHHH CS
        PIF1  57 AssGvAalllegGrtahsrfkiplekdees.tckikrgsklaellkktsliiwDEapmverec 118
                 A +G+Aa+ +  G+t+hs+ k+p++ +e    ++ ++  +++  l+k++ ii+DE +m+  + 
  CCE30065.1  67 APTGIAANAI-DGQTIHSLLKLPVSRSESLpPLEASQLANVRAALAKVHYIILDEKSMIGLRT 128
                 88********.9************998865156*************************86555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.8e-07    0.0017      49     109 ..      63     133 ..      25     140 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.8e-07
      AAA_30  49 viglAptgkaAkvLaeelgieastiakllkrlk................grarlepgtllivDEagmvdtkqlaall 109
                 +  +Aptg aA++      i+++ti++llk                    ra+l++ + +i DE +m++ ++l+++ 
  CCE30065.1  63 MERAAPTGIAANA------IDGQTIHSLLKLPVsrseslppleasqlanVRAALAKVHYIILDEKSMIGLRTLRQIR 133
                 3445555555554......5688999999555599999999999*9*9877888889****************9985 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   8.9e-06     0.053      67     127 ..      76     137 ..      24     140 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.9e-06
      AAA_19  67 aeatTiHrlalldfddlltealelle...eaeeekklqeeellivDEfqdvdelqyrLlkallg 127
                  + +TiH+l  l++    +e l  le    a+ +  l +  ++i DE +++     r ++a ++
  CCE30065.1  76 IDGQTIHSL--LKLPVSRSESLPPLEasqLANVRAALAKVHYIILDEKSMIGLRTLRQIRATPN 137
                 34799****..888888888888888875345566675555***********999888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.71
# Mc/sec: 600.62
//
Query:       CCE30066.1  [L=245]
Description: uncharacterized protein CPUR_03914 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.073   12.9   0.2       0.15   11.9   0.1    1.6  2  RecO_C    Recombination protein O C terminal


Domain annotation for each model (and alignments):
>> RecO_C  Recombination protein O C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   8.3e-06      0.15      65     111 ..      48      94 ..      46     128 .. 0.87
   2 ?   -2.3   0.0      0.19   3.4e+03     117     125 ..     160     169 ..     113     199 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.3e-06
                 ----SB-TTT--BS--EE-TTT.....SSEE-TTT-SS----HHHHH CS
      RecO_C  65 apdldsCaacgekialaafspswggllcsecaakapagrplspetla 111
                 +pd  +C +cg + +l +f p++g     +c a+++++r+ + ++l+
  CCE30066.1  48 GPDYRKCINCGLTKPLEDFKPFRGTSYVLRCIACRERQRQTTSSALH 94 
                 79********************9997777777777777777777665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.19
                 TTS.-HHHHH CS
      RecO_C 117 lrg.dleklg 125
                 ++  +l++l+
  CCE30066.1 160 RGRqELDALH 169
                 3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1745.79
//
Query:       CCE30067.1  [L=541]
Description: related to RAD57 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-41  140.9   0.0    3.8e-40  137.8   0.0    2.0  1  Rad51     Rad51
    2.7e-05   23.8   0.1    0.00019   21.1   0.1    2.3  1  AAA_25    AAA domain
    0.00059   19.3   0.0     0.0012   18.2   0.0    1.5  1  ATPase    KaiC
    0.00078   19.9   0.1    0.00078   19.9   0.1    1.8  2  AAA_16    AAA ATPase domain
     0.0011   18.5   0.0        0.4   10.1   0.0    2.1  2  RecA      recA bacterial DNA recombination protein
  ------ inclusion threshold ------
      0.023   14.6   0.4       0.19   11.6   0.4    2.1  1  NACHT     NACHT domain
      0.029   14.1   0.0      0.051   13.3   0.0    1.4  1  AAA_24    AAA domain
      0.033   14.7   0.0      0.057   13.9   0.0    1.4  1  ABC_tran  ABC transporter
      0.072   13.4   0.1       0.29   11.4   0.1    2.0  1  AAA_22    AAA domain


Domain annotation for each model (and alignments):
>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.8   0.0   1.9e-43   3.8e-40      18     223 ..     153     474 ..     134     488 .. 0.89

  Alignments for each domain:
  == domain 1  score: 137.8 bits;  conditional E-value: 1.9e-43
                 EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHH......HHTT--HHHHGGGEEEEE CS
       Rad51  18 qlttGskklDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveia......erykldkeevlenvayaR 110
                 +++t +  lD  L GGi+t sitei Ge+++Gktql  tlc++vqlp   +G  ++a+yi+te+++ ++rl ++       +    ++++  +  +  R
  CCE30067.1 153 RISTLDPLLDVPLAGGIPTSSITEITGESGAGKTQLLLTLCLAVQLP-PPHGLSKQALYISTESGLATRRLAQMLsshpllQ----QSKDDSNASPSSR 246
                 48888999***************************************.5689*********************994444442....2223333333444 PP

                 --ST............THHHHHHH.HTHHHHHHS-EEEEEEETTTGGGCH-..............------THHHHHHHHHHHHHHHHHHHHH--EEEE CS
       Rad51 111 ayti............ehqeellq.qaaallaedkfallivDsvtalyRtd..............fsgrgelakRqqklgkllrtLrkladefevavvi 182
                    +            e+q ++l+ q++ lla+++++ll++Dsv+a+yR++               s   ++a+R   l +l   Lr la ++++avv+
  CCE30067.1 247 LRPSldnilstvtpdlESQDHILEyQVPVLLARHNIGLLVIDSVAANYRAEfergdhgptsstssSSYAANMAARSAALVRLGALLRDLARRHDIAVVV 345
                 4333444455566666*********************************************999877789***************************** PP

                 EEE----...............................................................................---.------... CS
       Rad51 183 tnqvvaq...............................................................................vdgqaalfsa... 199
                 +nqv ++                                                                               +d q  +f++   
  CCE30067.1 346 ANQVADRfpssvlrqpltpagatrggkghagtiqdsplasrnrppppsalqstplssslspsssplppppffpptddqppahpalrLDHQQRWFTGwgd 444
                 *************************************************************************************************** PP

                 ......------HHHHHHHH-SEEEEEEE- CS
       Rad51 200 ......dpkkPigGlvlahasttRlalrkg 223
                         k P++Glv++ +++ R++l k+
  CCE30067.1 445 dprsnrALKTPSLGLVWSTQISCRIVLLKR 474
                 999988889******************997 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   9.5e-08   0.00019      28     159 ..     167     298 ..     153     351 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 9.5e-08
      AAA_25  28 gllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal............rddarllvldlagvesl 114
                 g +p  +++ ++G +g+GKt l+l l+lav +  p  g         ly+s+E +     rRl++++  +            +              s 
  CCE30067.1 167 GGIPTSSITEITGESGAGKTQLLLTLCLAVQLPPPH-G----LSKQALYISTESGL--ATRRLAQMLSSHpllqqskddsnaS-------------PSS 245
                 4569999999********************974433.3....5679*********9..99*******9985666554443321.............122 PP

      AAA_25 115 pLf.akdrggtlltadvdalea.......aieevegvrlvviDplsralggde 159
                 +L+ ++d+  +++t+d++  +        ++ ++++++l+viD++++ ++++ 
  CCE30067.1 246 RLRpSLDNILSTVTPDLESQDHileyqvpVLLARHNIGLLVIDSVAANYRAEF 298
                 222122333333444443333300011113334578********999888754 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.2e-07    0.0012       5      35 ..     154     188 ..     151     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.2e-07
      ATPase   5 IeglDeilk....gGipegrvvlitGepGtGKtif 35 
                 I  lD +l+    gGip  +++ itGe+G+GKt +
  CCE30067.1 154 ISTLDPLLDvplaGGIPTSSITEITGESGAGKTQL 188
                 5556666555555********************66 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.3       7.8   1.6e+04      85     104 ..     105     121 ..      96     142 .. 0.49
   2 !   19.9   0.1   3.9e-07   0.00078       9     107 ..     154     286 ..     152     347 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 7.8
      AAA_16  85 lldeaesaeleawrekleea 104
                 ++de   ae+++ ++k +e+
  CCE30067.1 105 EADE---AEAAERQQKGKEQ 121
                 3333...3333333333332 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 3.9e-07
      AAA_16   9 leqLlsalervrsgrp...elvllsGesGvGKsslvrellr..alekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekle 102
                 +++L  +l+   +g+    +++ ++GesG GK+ l+ +l    +l   +g+  ++ + + es+++   laq+l+ + ll+q +d+++++  ++ r  l+
  CCE30067.1 154 ISTLDPLLDVPLAGGIptsSITEITGESGAGKTQLLLTLCLavQLPPPHGLSKQALYISTESGLATRRLAQMLSSHPLLQQSKDDSNASPSSRLRPSLD 252
                 66778888855555555889999*************44443125555544443333333356666677******************************9 PP

      AAA_16 103 eala.............................a 107
                   l+                              
  CCE30067.1 253 NILStvtpdlesqdhileyqvpvllarhnigllV 286
                 9999555555544444444444444444444440 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0002       0.4      39      78 ..     159     197 ..     146     225 .. 0.82
   2 !    6.2   0.0     0.003         6     124     192 ..     274     352 ..     245     372 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0002
                 HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH CS
        RecA  39 laldialGiGGlpkGriieiyGpessGkttlalhaiaeaq 78 
                   ld+ l  GG+p   i+ei G   +Gkt l l +   +q
  CCE30067.1 159 PLLDVPLA-GGIPTSSITEITGESGAGKTQLLLTLCLAVQ 197
                 55777776.*********************9998776666 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.003
                 HHHHTTT--SEEEEE-TTT---STT--.-------....--HHHHHH..HHHHHHHHHHH....TTT--EEEEEEE---- CS
        RecA 124 dalvrsgaidlivvdsvaalvpkaeie.Gemgdsk....vglqarlm..sqalrkltgai....sksntvvifinqirek 192
                  +l+    i l+v+dsvaa   +ae e G+ g ++     +  a +   s al +l + +    ++ +++v+  nq+ ++
  CCE30067.1 274 PVLLARHNIGLLVIDSVAANY-RAEFErGDHGPTSstssSSYAANMAarSAALVRLGALLrdlaRRHDIAVVVANQVADR 352
                 45777789**********965.7777657765433000033334443336788888876522224677888888888766 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   9.5e-05      0.19       5      89 ..     177     289 ..     173     296 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.5e-05
                 EEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTT.TTTS-...-HCHHHCCCCTS--SSS-C............................... CS
       NACHT   5 lqGeaGsGKTtLlqklalawaegklpqgafklvFflslre.lsrsgnarsladllfsqlpepaapvse............................... 71 
                 ++Ge+G GKT Ll  l+la + + + +   k  +++s  + l ++    +la++l s+ +  +++ +                                
  CCE30067.1 177 ITGESGAGKTQLLLTLCLAVQLPPPHGLS-KQALYISTESgLATR----RLAQMLSSHPLLQQSKDDSnaspssrlrpsldnilstvtpdlesqdhile 270
                 89******************999988876.555555544314443....44444444322222222222333447777777777777777775555555 PP

                 .CHHHHCCSCCCEEEEEE- CS
       NACHT  72 .vwavllelperlLlilDg 89 
                   + vll++ +  Ll++D+
  CCE30067.1 271 yQVPVLLARHNIGLLVIDS 289
                 5555555555555678776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.6e-05     0.051       7      74 ..     177     290 ..     174     345 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
      AAA_24   7 iyGpsgiGKTtlakel............gpkplfidtekGlksldadkfpdie....................swedfldevvel.............. 59 
                 i+G+sg+GKT l+++l             +++l+i te Gl+    +++ + +                    s++++l++v+ +              
  CCE30067.1 177 ITGESGAGKTQLLLTLclavqlppphglSKQALYISTESGLATRRLAQMLSSHpllqqskddsnaspssrlrpSLDNILSTVTPDlesqdhileyqvpv 275
                 89*************************99***********97766666554445555555555555555444444444444444455555555555555 PP

      AAA_24  60 aaeladyktlviDti 74 
                   + +++  lviD++
  CCE30067.1 276 LLARHNIGLLVIDSV 290
                 555555666666665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.9e-05     0.057       8      34 ..     169     195 ..     164     269 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.9e-05
                 EETTSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagl 34 
                 +  ++++ i+Ge+GaGK+ Ll +l+  
  CCE30067.1 169 IPTSSITEITGESGAGKTQLLLTLCLA 195
                 678899***************998755 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00015      0.29       6      98 ..     173     288 ..     170     294 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsstsskdllrellralglelka........................erlsseel 78 
                 +i+ +tGesG+GKT ll +l    +          +++ +++   s+   + l+++l +   l++++                           s++++
  CCE30067.1 173 SITEITGESGAGKTQLLLTLCLAVQLP---PPhgLSKQALYISTESGLATRRLAQMLSSHPLLQQSKddsnaspssrlrpsldnilstvtpDLESQDHI 268
                 6888************99998876422...223334444444444444444444444443333333333444555554444444444444333333334 PP

      AAA_22  79 l.ealeqalraravielliiD 98 
                 l  ++   l ++  i+ll+iD
  CCE30067.1 269 LeYQVPVLLARHN-IGLLVID 288
                 4233333333333.3666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 3727.27
//
Query:       CCE30068.1  [L=1159]
Description: probable DNA-directed RNA polymerase III second-largest chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-120  403.2   0.3   1.9e-120  402.5   0.0    1.5  2  RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
    3.6e-56  189.9   0.2    6.2e-56  189.1   0.2    1.3  1  RNA_pol_Rpb2_1  RNA polymerase beta subunit
    4.2e-33  113.6   0.6    9.6e-33  112.4   0.6    1.6  1  RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
    3.3e-29  101.9   0.2    7.7e-29  100.7   0.1    1.7  2  RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
    9.4e-22   77.1   0.2    2.3e-21   75.8   0.2    1.7  1  RNA_pol_Rpb2_4  RNA polymerase Rpb2, domain 4
    2.3e-19   69.4   0.0    4.8e-19   68.3   0.0    1.6  1  RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
    3.6e-11   43.5   0.2    1.2e-10   41.7   0.2    2.0  1  RNA_pol_Rpb2_5  RNA polymerase Rpb2, domain 5
  ------ inclusion threshold ------
       0.71    8.6   2.9        2.7    6.7   0.5    2.5  3  NRDD            Anaerobic ribonucleoside-triphosphate reducta


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.5         3   6.8e+03     156     203 ..     189     229 ..     182     244 .. 0.37
   2 !  402.5   0.0  8.4e-124  1.9e-120       1     390 []     686    1064 ..     686    1064 .. 0.93

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 3
                     -EEETT-EEE---..B-----...-----------...-B---EE--TT CS
  RNA_pol_Rpb2_6 156 aevkegdilvgkvtkgeteltpeekllraifgekare.vkdtslrvksg 203
                     ++++++ ++v           +++++++a  +++++e + +t +++k++
      CCE30068.1 189 EQLSKNRVIVEAD--------EKNNIISASVTSSTHErKSKTYVTMKKD 229
                     4444444444432........1112222222222222122233333332 PP

  == domain 2  score: 402.5 bits;  conditional E-value: 8.4e-124
                      HHHT-SS-TTB-HHHHHHHHHHGGGB-S---TTTTT---SSEEEESS----SSB-S.TTTTTS........GGGS-SEEEEEBBBS--TTTTT CS
  RNA_pol_Rpb2_6    1 vaklapvvehvqspriiiqaamekqalgiyslnkfkrsnqktyllcinqkPlvktgdkveagqvldgpatekgelalGqnavVAvmsyeGYni 93  
                      va ++p+++h+qspr+++q+am+kqa+g +++n+f+r+++ +y+l+++q+P+v ++ ++++++        +++l++G+na+V vmsy+GY+i
      CCE30068.1  686 VAGIIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISK-TIQLIH--------YDKLPAGHNATVVVMSYSGYDI 769 
                      6899****************************************************.999999........********************** PP

                      TT-EEEBCHHHHTTTT-EEEEEE..EEE--SSSS---.-S--..-.........-SS-GGGS-TTSB--SS-EEETT-EEE---..B-----. CS
  RNA_pol_Rpb2_6   94 EDaiilnerlvdrdvftsihikeyeveardtklgeeeitrdipnv.........seealkkLdedGivrvgaevkegdilvgkvtkgeteltp 177 
                      EDa++ln++++dr++ ++ ++++y++e +++++g++e + d+ n+         +e++++ Ld+dG+ +vg +vk+g+++v+k   ++ +l+ 
      CCE30068.1  770 EDALVLNKASIDRGFGRCQVFRKYTTELQKYPNGRRERIGDPVNQensgggpvrREAKYEVLDDDGLATVGYRVKHGEVMVKKE--TPLDLS- 859 
                      ***********************************666666666669************************************5..444444. PP

                      ..-----------...-B---EE--TT-EEEEEEEEE.......EE-TT--EEEEEEEEEEE---TT-BEEETTS---BBEEEB-TTTSEEET CS
  RNA_pol_Rpb2_6  178 eekllraifgekare.vkdtslrvksgeegvVdkvkvfsrekgdelkagvnklvkvyvaqkRklqvGDKfasrhGqKGvvslilpqeDmPfle 269 
                          ++ i  +++ + ++d+ + ++   ++++dkv++       + +++ ++++kv ++q+R++++GDKf+srhGqKGvv++i++qeDmPf++
      CCE30068.1  860 ----TTGIGLDRGPSeYRDSPVSYRIPDPAYIDKVMI-------SRTEKDMTVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFAD 941 
                      ....3444444444349********************.......7788889****************************************** PP

                      TS---SEEE-GGGCHHH-BTTHHHHHHHHHCCCSSSS--B..--TT-...-HHHHHHHHHTTS-TT-EE-EEETTTS-B-SS-EEB-EEEEEE CS
  RNA_pol_Rpb2_6  270 dGivvDivlNPlgvPSRmtigqllEtllgkaaalegkkvd..atvFdgakeeeikelLeeagleasGkevlydGrtGekleaeifvGviYylk 360 
                      +G ++Di++NP+g+PSRmt+g+llE+l gka+ ++g+  +  + +F+++  e++++ L   g++ +Gk+++++G tGe+lea+if G+iYy++
      CCE30068.1  942 NGLCPDIIMNPHGFPSRMTVGKLLECLTGKASIIDGRPDYgfGDAFRSHPVEDMSKVLLDYGFSWEGKDYFTSGLTGEPLEAYIFNGPIYYQR 1034
                      ************************************876522689**8888****************************************** PP

                      BS--CCCS----SS--B-TTT--B-SCGGG CS
  RNA_pol_Rpb2_6  361 LkhlvedKihaRstGpyslltqQPlgGkaq 390 
                      Lkh+v+dK+h+Rs+Gp   lt+QP++G+++
      CCE30068.1 1035 LKHMVQDKMHSRSRGPRAILTRQPTEGRSR 1064
                      ****************************86 PP

>> RNA_pol_Rpb2_1  RNA polymerase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.1   0.2   2.8e-59   6.2e-56       1     197 [.      43     418 ..      43     427 .. 0.97

  Alignments for each domain:
  == domain 1  score: 189.1 bits;  conditional E-value: 2.8e-59
                     CTTHHHHHHHHHHHHTHHHHHCTTSSECCHCSSSHCSSSCEEEEEEEEEEESCSSEC.TT.SCEEES.HHHHHHCTSBXEEEEEEEEEEEECCCC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1   1 gLvsqqldSFnkfveqdlekiikeeaaieseeeiqssgeelelkfvsirlgkPvvde.sd.asereiyPkearlrnltYsaplyvklklvvyekd 93 
                     gLv+q++dS+n fveq++++i++++ +i+s++++     ++ l+f +ir+++P   + +d  s+ e++P+e+rlr++tY ap+ v++k+++    
      CCE30068.1  43 GLVKQHIDSYNFFVEQEIKDIVRANRTIRSDVDS-----NFWLDFTDIRVDRPRRLDhNDaKSRSEVTPMECRLRDMTYAAPIVVDIKYIR---- 128
                     69*******************************7.....5*************9877466345679*************************.... PP

                     TCCEEEEEEEEEEEEEXBTTSTTSSSTTS.HHHHHHTTS.TTS..SSEEETTCEEEEXEEEE................................. CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
  RNA_pol_Rpb2_1  94 nkeeikeeevyiGelPlMlrskacvlseaseeelvelkEcpldqGGyFiinGtekvivaqek................................. 155
                     +k++i +++v +G++P+Ml+s +c ls+a++ ++ +++Ecpld+GGyFiinGtekvi+ qe+                                 
      CCE30068.1 129 DKHQIIRKNVPLGRMPVMLKSCKCRLSGATNAQMEAMNECPLDPGGYFIINGTEKVILIQEQlsknrviveadeknniisasvtsstherkskty 223
                     9********************************************************************************************** PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      CCE30068.1 224 vtmkkdrivmthnvlvegvpiviilkalgglsdyeimqlvagsdgryqdefvinfdeaaragvftqhqaleyigarvkmgskrtmfgpqvrrnhv 318
                     *********************************************************************************************** PP

                     ..........................................................XHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSSSH CS
                     ..........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 156 ..........................................................laGeLlaslfrvllkklerdvkerlqksleklddlml 192
                                                                               laG+Ll+ lf++l+k++ ++vk++++k l+k++++ +
      CCE30068.1 319 eegldalanliiahvpiegldfypkalyvammtrrvlmasqnpklvddrdfvgnkrleLAGQLLSLLFEDLFKRFMSEVKMSVDKFLKKNNRAIP 413
                     *******************************************************************************************8888 PP

                     HHHSC CS
                     xxxxx RF
  RNA_pol_Rpb2_1 193 qllvn 197
                      ++v+
      CCE30068.1 414 LDAVH 418
                     77775 PP

>> RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.6   4.3e-36   9.6e-33       1      86 [.    1066    1151 ..    1066    1152 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 4.3e-36
                      BBEEEEHHHHHHHHHHTBHHHHHHHHTTTTTEEEEEEESSSSSCCCEEEBTTTTCSSSEEEEEEEHHHHHHHHHHHHTTBEEEEES CS
  RNA_pol_Rpb2_7    1 GGlrfGEMErdaliayGaaalLkerltikSDavevdvcgrckllaaaneCkivkseekiekveipeafklLlqeLqslgialklll 86  
                      GGlr+GEMErd+liayGa++lL erl+ +SD +++d+c++c+l+ ++ +C+++ks+++++++++p+a+klL+qeL s+++ ++l+l
      CCE30068.1 1066 GGLRLGEMERDCLIAYGASQLLLERLMLSSDGTQLDICQQCGLFGYKGYCNTCKSTRQVTQMQMPYAAKLLVQELISMNVGVRLQL 1151
                      9*******************************************************************************999875 PP

>> RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.1   3.4e-32   7.7e-29       2     190 .]     193     376 ..     192     376 .. 0.90
   2 ?   -4.3   0.0       5.1   1.2e+04     134     151 ..     507     524 ..     506     528 .. 0.79

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 3.4e-32
                     TSCEEEEE-SSSSSESSSCCEECCCEEEEECCCCSTSCEEEEECTTSSSEEEHHHHHHHTT--STTHHHHHHTSSSTTHHHHHHHHHHHHHHCTS CS
  RNA_pol_Rpb2_2   2 sngiyvekekdknkisatvtsslisqrgsvlklekdgktliwtriskkrkipivivlkAlglvsdreIlericydsedsqlleelleeleekeei 96 
                     +n+++ve+++++n isa+vtss+++++++++++ k++++++ +++ ++  +pivi+lkAlg +sd eI++ + +++ ++q+++ ++  +  ++ +
      CCE30068.1 193 KNRVIVEADEKNNIISASVTSSTHERKSKTYVTMKKDRIVMTHNVLVE-GVPIVIILKALGGLSDYEIMQLVAGSDGRYQDEFVINFDEAARAGV 286
                     8***************************************99998888.********************************************** PP

                     SSCHHHHHHHHHCSSTTSSSCCCCCHHH.HHHHCHHHHHHHTTTTSSTTTTTSSSTCHH..HHHHHHHHHHHHHHHHTTSSSS--TTSGGGEEEE CS
  RNA_pol_Rpb2_2  97 qtqeealdyigkvvalrrgeearlqsar.eilqkrydlgeigreklnkhlglseslenkrlkaqdilymidrLlslklgrrevDDiDhlgnkRvr 190
                      tq +al+yig++v+++++++ + ++ r +  +    l+ + +  +  h+ ++   +    ka ++++m++r+l+++++++ vDD+D +gnkR++
      CCE30068.1 287 FTQHQALEYIGARVKMGSKRTMFGPQVRrNHVE--EGLDALANLIIA-HVPIEGLDFYP--KALYVAMMTRRVLMASQNPKLVDDRDFVGNKRLE 376
                     ************999988888776555503443..356666665555.*******8888..********************************95 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 5.1
                     HHHTTTTSSTTTTTSSST CS
  RNA_pol_Rpb2_2 134 geigreklnkhlglsesl 151
                     g + +  l++h++++ + 
      CCE30068.1 507 GLVKNLALMTHITTNVEE 524
                     56788899******9984 PP

>> RNA_pol_Rpb2_4  RNA polymerase Rpb2, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.2     1e-24   2.3e-21       1      62 []     557     618 ..     557     618 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 1e-24
                     EECTT-BEEE-S-HCCHHHHHHHHCCTTSS-TT-EEEE-TTT--EEEE-SSEEB-EEEEE-S CS
  RNA_pol_Rpb2_4   1 VfvNGrllGvtrdpkklvetlRelRRkgkiseevsivlnekqkevkiatDgGRvcRPliiVe 62 
                     ++vNG+ +++tr pk+++ ++R++RR+g is++vsi ln++ + v+iatD+GR+cRP+iiV+
      CCE30068.1 557 IHVNGTPFALTRYPKRFAYRFRTMRRRGWISPFVSINLNSHFNAVHIATDEGRICRPYIIVK 618
                     68***********************************************************7 PP

>> RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   2.2e-22   4.8e-19       2      68 .]     455     518 ..     454     518 .. 0.97

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 2.2e-22
  RNA_pol_Rpb2_3   2 vldrlnplselshlrrvsslrgglskerkttevRdlhpshwGriCpveTPEGencGlvksLallarv 68 
                     vl rl+++s l  ++r+ss    ++k+rk + +R l+ps+wG++C ++TPEGe cGlvk+Lal++++
      CCE30068.1 455 VLSRLSYISALGMMTRISSQ---FEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHI 518
                     789***************88...*****************************************987 PP

>> RNA_pol_Rpb2_5  RNA polymerase Rpb2, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.2   5.5e-14   1.2e-10       1      58 []     639     679 ..     639     679 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 5.5e-14
                     HHHHHHTTSEEEEEHHHHTT--EESSTTTCSST-SSTTTSS--TTSSSST-SEEES-G CS
  RNA_pol_Rpb2_5   1 wddLlregvvEylDaeEEetamIamtpedleksreekealeekenskshtyTHcEIhP 58 
                     +dd+l++gvvEylD++EE++a++a++++++++s                 +TH+EI+P
      CCE30068.1 639 FDDFLTKGVVEYLDVNEEQDALVALYEKNMTQS-----------------TTHLEIEP 679
                     9*****************************887.................69999999 PP

>> NRDD  Anaerobic ribonucleoside-triphosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       0.8   1.8e+03     268     300 ..     433     465 ..     403     482 .. 0.69
   2 ?    0.9   0.0     0.067   1.5e+02     142     170 ..     572     599 ..     565     663 .. 0.80
   3 ?    6.7   0.5    0.0012       2.7     505     533 ..    1098    1126 ..    1089    1129 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.8
                 S---EEEEEEEEEEHHHHHH..HH-HHHHHHHH CS
        NRDD 268 rlggrgslgvvtiNlprlaleakgdeekffelL 300
                 r   +g+++v   N++r ++ +  ++  +++ L
  CCE30068.1 433 RAIQTGNWSVKRFNMNRAGVTHVLSRLSYISAL 465
                 45559************9997554544455444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.067
                 HHHHHTTS-S..SSSS---EEEEEE.-HH CS
        NRDD 142 efvynlntlpsrrGaQvpFtninlgldtp 170
                 +f y +  ++ rrG  +pF++inl+   +
  CCE30068.1 572 RFAYRFR-TMRRRGWISPFVSINLNSHFN 599
                 7999999.566************986655 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0012
                  --EEEETT.--EESSSB-TTT--BE.EEE CS
        NRDD  505 pkidvCnecgykgeiekCpkCgseeevev 533 
                  +++d+C++cg  g++  C +C+s+++v+ 
  CCE30068.1 1098 TQLDICQQCGLFGYKGYCNTCKSTRQVTQ 1126
                  689************88*****9988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 7847.00
//
Query:       CCE30069.1  [L=1084]
Description: related to Drosophila pumilio protein and Mpt5p protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-54  179.2  17.7    4.5e-07   29.2   0.0    8.7  8  PUF       Pumilio-family RNA binding repeat
  ------ inclusion threshold ------
       0.94    9.5   3.1       0.79    9.8   0.2    2.3  3  INCENP_N  Chromosome passenger complex (CPC) protein INCENP N
        1.2    8.9  10.1       0.58   10.0   6.5    2.1  2  Collagen  Collagen triple helix repeat (20 copies)


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1     3e-09   1.8e-05       2      32 ..     649     679 ..     648     681 .. 0.85
   2 !   29.2   0.0   7.6e-11   4.5e-07       3      27 ..     686     710 ..     684     715 .. 0.88
   3 !   22.6   0.1   9.7e-09   5.8e-05       8      35 .]     727     755 ..     722     755 .. 0.90
   4 !   25.7   0.2     1e-09     6e-06       6      35 .]     762     791 ..     761     791 .. 0.89
   5 !   25.2   0.1   1.4e-09   8.4e-06       4      30 ..     796     822 ..     794     823 .. 0.92
   6 !   20.8   0.0   3.4e-08   0.00021       9      33 ..     837     861 ..     830     863 .. 0.84
   7 !   18.7   0.1   1.6e-07   0.00096       6      34 ..     870     897 ..     866     898 .. 0.88
   8 !   17.7   0.0   3.4e-07     0.002       9      31 ..     911     933 ..     907     937 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3e-09
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqkk 32 
                 + g + +L++dq+G++ +Qk le     q++
  CCE30069.1 649 FTGQIYELCKDQHGCRYLQKKLEERNADQVH 679
                 67999******************87776665 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 7.6e-11
                 GGGHHHHHTSTTHHHHHHHHHHHSC CS
         PUF   3 kgnlvqLstdqyGnyvvQkllehat 27 
                  +++++L+td++Gny++Qklle + 
  CCE30069.1 686 NQHVIELMTDPFGNYLCQKLLEFCN 710
                 689*******************976 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 9.7e-09
                 HHHTSTTHHHHHHHHHHH.SCHHHHHHHH CS
         PUF   8 qLstdqyGnyvvQklleh.ateeqkklil 35 
                  ++ +q+G++++Qk++e+ +t+ q++li+
  CCE30069.1 727 RIALNQHGTRALQKMIEYiSTPQQVHLII 755
                 5899******************9999996 PP

  == domain 4  score: 25.7 bits;  conditional E-value: 1e-09
                 HHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   6 lvqLstdqyGnyvvQkllehateeqkklil 35 
                 +v+L++d +Gn+v+Qk+l ++t+ + ++i+
  CCE30069.1 762 VVELIQDLNGNHVIQKCLNKLTSLDAQFIF 791
                 89******************9888887776 PP

  == domain 5  score: 25.2 bits;  conditional E-value: 1.4e-09
                 GGHHHHHTSTTHHHHHHHHHHHSCHHH CS
         PUF   4 gnlvqLstdqyGnyvvQkllehateeq 30 
                 +++++  t+++G++v+Q++++ha+  q
  CCE30069.1 796 NHCIEVGTHRHGCCVLQRCIDHASGDQ 822
                 799*******************99877 PP

  == domain 6  score: 20.8 bits;  conditional E-value: 3.4e-08
                 HHTSTTHHHHHHHHHHHSCHHHHHH CS
         PUF   9 LstdqyGnyvvQkllehateeqkkl 33 
                 L++d++GnyvvQ++++ ++++ ++ 
  CCE30069.1 837 LVQDPFGNYVVQYIIDLNEPSFTEP 861
                 89**************888877765 PP

  == domain 7  score: 18.7 bits;  conditional E-value: 1.6e-07
                 HHHHHTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF   6 lvqLstdqyGnyvvQkllehateeqkkli 34 
                 + qLs +++ ++v++k+l  ++ +q k++
  CCE30069.1 870 ISQLSRHKFSSNVIEKCLR-CSQPQSKDM 897
                 569***************9.999998877 PP

  == domain 8  score: 17.7 bits;  conditional E-value: 3.4e-07
                 HHTSTTHHHHHHHHHHHSCHHHH CS
         PUF   9 LstdqyGnyvvQkllehateeqk 31 
                 L  d y+nyvvQ+ le at+ qk
  CCE30069.1 911 LLRDSYANYVVQTALEFATPQQK 933
                 778*************9999886 PP

>> INCENP_N  Chromosome passenger complex (CPC) protein INCENP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00013      0.79      19      30 ..     673     684 ..     666     685 .. 0.85
   2 ?   -2.5   0.1      0.88   5.3e+03      12      19 ..     703     710 ..     701     711 .. 0.72
   3 ?   -2.1   0.0      0.69   4.1e+03      12      27 ..     739     754 ..     739     754 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00013
    INCENP_N  19 nevenkhlvWLe 30 
                 ++++++h++WLe
  CCE30069.1 673 RNADQVHMIWLE 684
                 89*********8 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.88
    INCENP_N  12 qKlqeFln 19 
                 qKl eF n
  CCE30069.1 703 QKLLEFCN 710
                 78888876 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.69
    INCENP_N  12 qKlqeFlnevenkhlv 27 
                 qK+ e++ + +++hl+
  CCE30069.1 739 QKMIEYISTPQQVHLI 754
                 899***********95 PP

>> Collagen  Collagen triple helix repeat (20 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       0.3   1.8e+03      31      37 ..     408     414 ..     403     422 .. 0.44
   2 ?   10.0   6.5   9.6e-05      0.58       7      47 ..     553     593 ..     544     598 .. 0.45

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.3
                 E-TTSS- CS
    Collagen  31 GpaGekG 37 
                 Gp+G++G
  CCE30069.1 408 GPTGFSG 414
                 2222222 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 9.6e-05
                 XXXXXXXXXXXX-----XXXXEEEE-TTSS----------- CS
    Collagen   7 GepGppGppGkrGepGeaGekGekGpaGekGppGaaGkpGa 47 
                 G+ G + ++G +G +G +  +G++G +G +  +G +G +Ga
  CCE30069.1 553 GAGGMNNMNGMNGINGMNPMNGMNGMNGLNPMNGMNGMNGA 593
                 33333333444444444444444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1084 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.43
# Mc/sec: 7643.61
//
Query:       CCE30070.1  [L=476]
Description: probable ribosomal protein L15.e.B, cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-89  297.5   9.8    3.7e-89  297.5   9.8    1.9  2  Ribosomal_L15e  Ribosomal L15


Domain annotation for each model (and alignments):
>> Ribosomal_L15e  Ribosomal L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   1.0     0.087   1.6e+03      39      78 ..      44      80 ..      37     100 .. 0.45
   2 !  297.5   9.8   2.1e-93   3.7e-89       1     187 [.     275     460 ..     275     463 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.087
                    SS-SSHHHHHHHT--SSTTEEEEEEEE.E-SS---..---S CS
  Ribosomal_L15e 39 erptrldrArrLGYkakqGivvvrvrv.rrGgrkkkvskgk 78
                    ++p r++r r++   ak       v++ ++G+++ +++  +
      CCE30070.1 44 RQPKRPQRTRNVTSVAKPSN----VKIsKKGNKQTRANTLA 80
                    44555555555444444432....22212233333222222 PP

  == domain 2  score: 297.5 bits;  conditional E-value: 2.1e-93
                     -SHHHHHHHTTSTTSHHHHHHHHHHHHHHTTS-SEEEESS-SSHHHHHHHT--SSTTEEEEEEEEE-SS---..---SS---GGGG-SSS---SS CS
  Ribosomal_L15e   1 gaykylrelwkkkqsdvlrellrerlweyrqepavvrverptrldrArrLGYkakqGivvvrvrvrrGgrkkkvskgktgrkpkrqgvnklkpak 95 
                     ga ky++el+kkkqsd +++llr+r+weyrq+++++r++rp+r+d+ArrLGYkakqG+v++rvrvrrGgrk++++kg+t++kp++qg+n+lk ++
      CCE30070.1 275 GALKYVEELQKKKQSDLMSFLLRVRCWEYRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPAPKGATYGKPTNQGINQLKYQR 369
                     689******************************************************************************************** PP

                     -HHHHHHHHHHHHSTTSEEEEEEEEEEESSEEEEEEEEE-TTSHHHHT-TTTGGGGSGGGTTGGGGT-SHHHHHHTT-S-SS.TT-TTTSS- CS
  Ribosomal_L15e  96 slqaiaeervgrklpnlrvLnSYwvgeDgtykyyEvilvDpshkairndkkinwickkvhkhRelrGltsagkksRGlrkkglkgaekirgs 187
                     sl+a+aeervgr++ nlrvLnSYw+++D+tykyyEvilvDp+hkair d++inwi+++vhkhRe+rGlt++gkksRGl +kg++++++  g 
      CCE30070.1 370 SLKATAEERVGRRCANLRVLNSYWINQDSTYKYYEVILVDPQHKAIRIDPRINWIVNPVHKHREARGLTATGKKSRGL-NKGHRYNKTSAGR 460
                     ******************************************************************************.*******998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3555.41
//
Query:       CCE30071.1  [L=874]
Description: related to suppressor protein PSP1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-27   93.3   2.8    1.3e-26   92.7   2.8    1.3  1  PSP1      PSP1 C-terminal conserved region


Domain annotation for each model (and alignments):
>> PSP1  PSP1 C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   2.8   7.2e-31   1.3e-26       3      86 .]     637     720 ..     635     720 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 7.2e-31
        PSP1   3 vlrlatpedvstnlenkqdeekalhiaqeklkelnlnmklldaefqfdrkkltfyYvaeervDFreLvkeLfkfyktRIwLcai 86 
                 + rla++++++ ++ ++ +e+ka +++ +k+ke++l+m++ldaefq+d kkltfyY a++ ++F +Lv +Lfk+yktRIw+ ai
  CCE30071.1 637 IKRLAQHHELHSLRDKESQEAKAKRVCVQKVKEHGLDMEILDAEFQMDWKKLTFYYFADKYINFNNLVVDLFKVYKTRIWMSAI 720
                 88*******************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 6338.31
//
Query:       CCE30072.1  [L=303]
Description: related to NFU-1 protein (iron homeostasis) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-27   96.0   0.1    1.8e-27   95.3   0.1    1.4  1  NifU      NifU-like domain
      4e-27   94.1   0.0    1.1e-26   92.7   0.0    1.7  1  Nfu_N     Scaffold protein Nfu/NifU N terminal
  ------ inclusion threshold ------
      0.046   13.8   1.1       0.17   12.0   0.8    1.9  2  YojJ      Bacterial membrane-spanning protein N-terminus


Domain annotation for each model (and alignments):
>> NifU  NifU-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.1     3e-31   1.8e-27       1      67 []     209     275 ..     209     275 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 3e-31
                 HHHHHHH.HGGG--GG--EEEEEEEETTEEEEEEESGGGG-....THHHHHHHHHHHHH-TT--EEE CS
        NifU   1 ieevleeeirPaLasdGGdielvdvdegvVkvrlqGaCsgCpsstvtlkegiekaLkeevpevkeVe 67 
                 i+e+le++irPa+++dGGdie+ ++++g Vk++l+GaC++C sstvtlk+gie +L+++++evk V+
  CCE30072.1 209 IKELLETRIRPAIQEDGGDIEFRGFEDGFVKLKLRGACRTCDSSTVTLKNGIEGMLMHYIEEVKGVQ 275
                 89**************************************************************995 PP

>> Nfu_N  Scaffold protein Nfu/NifU N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.0   1.8e-30   1.1e-26       1      87 []      77     171 ..      77     171 .. 0.92

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 1.8e-30
       Nfu_N   1 iqteeTPNpnalkFlpgkellpe...gstaefksaeea.....asplakkLfkiegVksVfigsdFitvtkeddvdWeelkpevlevikeflesg 87 
                 iqte TPN +alkFlp+++++pe   +  +e+ + +++      spla+kL++i+g++sVf+g+dFitvtk+ d++W++++pe++++i+e+++sg
  CCE30072.1  77 IQTEVTPNADALKFLPNHRVVPEefnTPFIEYLNPRATispphPSPLAAKLMNIDGITSVFYGADFITVTKAGDANWAHIRPEIFSLITEAITSG 171
                 9*********************9885556999999943455679***********************************************9986 PP

>> YojJ  Bacterial membrane-spanning protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.41   2.5e+03      48      61 ..     125     138 ..     123     140 .. 0.87
   2 ?   12.0   0.8   2.8e-05      0.17       6      55 ..     252     301 ..     247     303 .] 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.41
        YojJ  48 ekfaeletlassyY 61 
                  k++++++++s +Y
  CCE30072.1 125 AKLMNIDGITSVFY 138
                 578999*******9 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 2.8e-05
        YojJ   6 leeelkeklkeeLeqiekeleevlkaldeedeClLcelesirekfaelet 55 
                 ++  lk+ +  +L++ ++e++ v ++ld+e+e  L e+ +  ek++  ++
  CCE30072.1 252 STVTLKNGIEGMLMHYIEEVKGVQQILDQEEEVALQEFSKFEEKLKHQQK 301
                 56689***********************************9999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2330.05
//
Query:       CCE30073.1  [L=252]
Description: uncharacterized protein CPUR_03921 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-10   40.7  11.0    2.3e-10   40.1  11.0    1.2  1  zf-HIT    HIT zinc finger
    7.8e-05   22.7   7.9    0.00016   21.7   7.9    1.5  1  zf-MYND   MYND finger


Domain annotation for each model (and alignments):
>> zf-HIT  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1  11.0   2.6e-14   2.3e-10       4      30 .]      58      85 ..      56      85 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 2.6e-14
                B-TTT-S.B-SEE-TTT--EESSHHHHH CS
      zf-HIT  4 lCgvCgf.pakYkCpkCntryCSLrCyk 30
                lCgvCg+   kYkCp+C+++yCS++C k
  CCE30073.1 58 LCGVCGAeQPKYKCPRCYIPYCSVACNK 85
                8*************************87 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   7.9   1.8e-08   0.00016       1      34 [.      59      91 ..      59      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.8e-08
                -TTT--.B-SC.E-TTTS-SEESSHHHHHHCHHHH CS
     zf-MYND  1 CavCgkaealk.kCagCksvfYCskeCqradwksH 34
                C vCg  e+ k kC++C  + YCs +C + + ++H
  CCE30073.1 59 CGVCGA-EQPKyKCPRC-YIPYCSVACNKTHKENH 91
                99****.55556*****.999***********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2073.12
//
Query:       CCE30074.1  [L=376]
Description: uncharacterized protein CPUR_03922 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2841.70
//
Query:       CCE30075.1  [L=870]
Description: related to aimless RasGEF (aleA) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-46  157.9   1.4      5e-46  157.1   1.4    1.4  1  RasGEF    RasGEF domain
      3e-11   43.5   0.1    9.9e-11   41.8   0.0    1.9  2  RasGEF_N  RasGEF N-terminal motif
  ------ inclusion threshold ------
      0.021   14.4   0.1       0.76    9.4   0.0    3.0  2  Ras       Ras family
       0.13   13.1   0.1       0.45   11.4   0.1    1.9  1  DUF5137   Protein of unknown function (DUF5137)
       0.15   12.4   0.0        1.8    8.8   0.0    2.6  2  AAA_22    AAA domain
       0.15   11.8   0.0       0.38   10.4   0.0    1.7  1  AAA_24    AAA domain


Domain annotation for each model (and alignments):
>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1   1.4   1.7e-49     5e-46       1     176 [.     618     800 ..     618     801 .. 0.92

  Alignments for each domain:
  == domain 1  score: 157.1 bits;  conditional E-value: 1.7e-49
      RasGEF   1 elAeqltlieaelfskikpeellgsa...wskedrs....pnveaviarfnrlsnwvaseilseeslkkRakviekfikiakecrklnNfnslmailsa 92 
                 ++A +lt+i++ +fs+i+ +++++++    ++++ +    +nv+++i++fn++++wva++il ++++k+Ra+++ekf++ia ++r+lnN+n+l+a+l++
  CCE30075.1 618 DVADELTRIDWIMFSSIRIRDFVRHVslsATQRN-KcrslQNVNRMINHFNHVAKWVANMILLRDKAKHRAQMLEKFMNIALRLRQLNNYNGLAAVLAG 715
                 69**********************9632133333.135589********************************************************** PP

      RasGEF  93 LqsspvsrLkktweavskkslktleeleelmspennfknyrealkssasskpciPflglyltdltfieegnpdtl..egk.iNfeKr 176
                 ++ ++++rL++t + vs + +k + +l  lm +++++ +yr a+++s  + p iPf+ l+ +dl+  eeg ++ +  +++ +N++K+
  CCE30075.1 716 INGTAIHRLTQTRALVSAEVQKRFARLLLLMGTQKSHFAYRLAWENS--PLPRIPFIPLHRRDLVTAEEGSKTIIgsNDDrVNWKKF 800
                 ***********************************************..9999*****************99888995556*****8 PP

>> RasGEF_N  RasGEF N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   3.3e-14   9.9e-11       2      96 ..     393     482 ..     392     492 .. 0.80
   2 ?   -3.2   0.1       3.5     1e+04      71      90 ..     659     678 ..     639     693 .. 0.58

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 3.3e-14
    RasGEF_N   2 vkagtlekLierLtsk..rlldddfletFLltyrsFttpaeLlekLieryeinppnnlesdesnswnsksssnirlrvlsvlkewvenhyydfsddk 96 
                 + +  ++ L++rL+++  + +d +f  +FL+ yr F  p+eL++++  r      ++ ++d  +s+n   ++ ++lr+++v+++wv++++ df ++ 
  CCE30075.1 393 IAGVAFKDLVDRLLAPplSRVDNNFSDIFLCLYRKFAAPNELFSAIQVRL-----QKVQHD--ESANYLIKTATQLRIVEVVSKWVSSYPGDFARSG 482
                 66778899******995444599***************************.....333333..234455666799******************9874 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.5
    RasGEF_N  71 snirlrvlsvlkewvenhyy 90 
                  n  ++ ++ + +wv n + 
  CCE30075.1 659 VNRMINHFNHVAKWVANMIL 678
                 22333667777777777665 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00025      0.76       2     115 ..     169     283 ..     168     355 .. 0.76
   2 ?   -1.5   0.1      0.57   1.7e+03      85     114 ..     654     683 ..     650     706 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00025
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTT...SSEEEEEEEEEETTEEEEEEEEEETTSGGG.HHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesT...igvdfytkeievdgkevkleiwDTAGqeef.kslrelyyrdaegillvyditsresfenvkkwvee 96 
                 + ++G  +vGK+s++ r  +   +   ++    + vd+ t+ +++ + e++   +D     ++ k+ +   +   +++l++yd+ sr+s +++ ++v  
  CCE30075.1 169 IAIIGADGVGKSSFVQRALDLACPPATNPSsarMAVDNVTHMVTLFELELEHFELDPCQPIQWpKEANGHIVPRLDAALVLYDVMSRNSIRELPQMVAS 267
                 678999999999999999888877666654222556777777777766665444565555455256677788899999********9999999999888 PP

                 HHHHSTTTSEEEEEEETTT CS
         Ras  97 ikrvaeenvpivLvGnKvD 115
                 +++     +p +L +  +D
  CCE30075.1 268 LTDA---GLPAILGACNCD 283
                 8764...346666666666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.57
                 HHHHTHHHHHHHHHHHSTTTSEEEEEEETT CS
         Ras  85 esfenvkkwveeikrvaeenvpivLvGnKv 114
                 +s++nv+++++++++va+   +++L+  K+
  CCE30075.1 654 RSLQNVNRMINHFNHVAKWVANMILLRDKA 683
                 688999999999999988667777777665 PP

>> DUF5137  Protein of unknown function (DUF5137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00015      0.45      33      55 ..     840     861 ..     836     865 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
     DUF5137  33 aeeiYeRSlqpeklPaLkpiqke 55 
                 +eeiY+RS+q+e+ +aL pi+ +
  CCE30075.1 840 DEEIYQRSIQVES-SALVPIEPS 861
                 79***********.******554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00061       1.8       6      30 ..     167     191 ..     163     288 .. 0.77
   2 ?   -0.1   0.1      0.35   1.1e+03      55     130 ..     638     716 ..     631     722 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00061
      AAA_22   6 gilvvtGesGtGKTtllrrlleqld 30 
                 + ++++G  G+GK+  ++r l+ ++
  CCE30075.1 167 YNIAIIGADGVGKSSFVQRALDLAC 191
                 6799***************999885 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.35
      AAA_22  55 dl.lrellralglelkaerlsseellealeqalraravielliiDEaqh.lrs.....eealeeLrsllnlsrkgvqliLvGt 130
                 d+ ++  l+a+++++ ++ ++  ++++++++ ++  a   +l+ D a h   +     +++   Lr+l n    g++ +L+G 
  CCE30075.1 638 DFvRHVSLSATQRNKCRSLQNVNRMINHFNHVAKWVAN-MILLRDKAKHrA-QmlekfMNIALRLRQLNN--YNGLAAVLAGI 716
                 55455557777877777888889999999999998888.888889998844.343234444444455555..88888888775 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00013      0.38       2      23 ..     166     187 ..     165     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
      AAA_24   2 klkiliyGpsgiGKTtlakelg 23 
                 +++i+i+G  g+GK++++ ++ 
  CCE30075.1 166 SYNIAIIGADGVGKSSFVQRAL 187
                 689***************9993 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 6048.32
//
Query:       CCE30076.1  [L=366]
Description: uncharacterized protein CPUR_03924 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2782.77
//
Query:       CCE30077.1  [L=501]
Description: related to ribosomal protein S5 (mitochondrial) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-22   77.6   0.1    1.8e-21   75.3   0.0    2.2  2  Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
    8.1e-18   64.2   0.6      2e-17   62.9   0.6    1.7  1  Ribosomal_S5    Ribosomal protein S5, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       0.2   1.8e+03      40      63 ..     162     185 ..     160     188 .. 0.83
   2 !   75.3   0.0     2e-25   1.8e-21       2      72 .]     414     484 ..     413     484 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.2
                     ---BS-SSHHHHHHHHHHHHHHTT CS
  Ribosomal_S5_C  40 akslgsrnpinvvkAtfeALkklr 63 
                     +k    ++   +++A++ A+++ +
      CCE30077.1 162 TKLTEKKTSDQLTRAMVRAVRRVK 185
                     7888889999999***99998876 PP

  == domain 2  score: 75.3 bits;  conditional E-value: 2e-25
                     EEETTEEEEEEE--TT--EES-HHHHHHHHHHT--SEE---BS-SSHHHHHHHHHHHHHHTTTT-.-GGGG CS
  Ribosomal_S5_C   2 gkfgavkvllkpaprGtGiiaggavravlelaGikDvlakslgsrnpinvvkAtfeALkklrspeevaalR 72 
                     +k +++ v l ++p+G+G+++ +++++++++ Gi+D+ a++ +s+np+n vkAtf+AL+++ +pee+a  R
      CCE30077.1 414 AKISGTVVELFSRPPGFGLRVPHRIFEMCRASGIHDIHARMPRSKNPMNSVKATFQALTNQVDPEEIAMGR 484
                     68899***************************************************************876 PP

>> Ribosomal_S5  Ribosomal protein S5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.6   2.2e-21     2e-17       3      65 .]     339     401 ..     337     401 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 2.2e-21
                   EEEEEEEEEEEEETTEEEEEEEEEEEEEETTTEEEEEEEEESSHHHHHHHHHHHHHHTEEE-- CS
  Ribosomal_S5   3 ekvlkikrvqkvtkgGrrtsfsalvvvGdgnGlvGlGvgkakevatAirkAiekAkknlvpvp 65 
                    kvl+++ v+++t+ G+++s ++++++G+gnG++G+Gv+k++e+ +A + A  +A++n+ p++
    CCE30077.1 339 RKVLVTRWVSNQTRLGKVRSTAVVAIAGNGNGRLGIGVAKSTEPGVASETAQLLAIRNMKPIR 401
                   79***********************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      694  (0.0387082); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3538.49
//
Query:       CCE30078.1  [L=86]
Description: uncharacterized protein CPUR_03926 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-29  101.1   0.5    2.9e-29  101.0   0.5    1.0  1  DASH_Dad3  DASH complex subunit Dad3


Domain annotation for each model (and alignments):
>> DASH_Dad3  DASH complex subunit Dad3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.5   1.6e-33   2.9e-29       1      70 [.      11      80 ..      11      83 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 1.6e-33
   DASH_Dad3  1 LspleqevLdeYerLaenlktLaselkeLasnsteeildgLReLErkiglvyTLlKaSVYsivlqqeede 70
                Lsple +vL+eYerLa+n+ +La +l+eLas+s+ ei dgLReLErk++l++TLlK+SVYsivlqqe+d 
  CCE30078.1 11 LSPLEIQVLEEYERLASNMSKLAGKLDELASSSSLEIGDGLRELERKTSLAFTLLKTSVYSIVLQQEYDG 80
                8******************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 667.07
//
Query:       CCE30079.1  [L=162]
Description: uncharacterized protein CPUR_03927 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.14   12.5   1.5       0.15   12.3   1.5    1.2  1  DUF3365          Protein of unknown function (DUF3365)
       0.22   11.1   8.5       0.37   10.4   8.5    1.3  1  IL11             Interleukin 11
       0.26   11.3  11.6       0.26   11.2  11.6    1.1  1  TFIIA            Transcription factor IIA, alpha/beta subunit
       0.31   10.5   5.1       0.32   10.4   5.1    1.1  1  DUF2868          Protein of unknown function (DUF2868)
       0.35    9.8   8.2       0.39    9.6   8.2    1.2  1  Herpes_DNAp_acc  Herpes DNA replication accessory factor
       0.35   11.0   8.0       0.47   10.6   8.0    1.2  1  RasGAP_C         RasGAP C-terminus
       0.91    9.8   3.4        1.5    9.2   3.4    1.3  1  DUF4134          Domain of unknown function (DUF4134)
        1.4    7.5  13.6        1.3    7.6  13.6    1.0  1  MAP65_ASE1       Microtubule associated protein (MAP65/ASE1 f
        1.5    7.5   6.1        1.8    7.4   6.1    1.2  1  Androgen_recep   Androgen receptor
        3.9    6.2   7.2        4.9    5.9   7.2    1.1  1  TraG_N           TraG-like protein, N-terminal region
        8.1    5.4  13.6         10    5.1  13.5    1.3  1  DUF945           Bacterial protein of unknown function (DUF94


Domain annotation for each model (and alignments):
>> DUF3365  Protein of unknown function (DUF3365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.5   9.4e-05      0.15      14      76 ..       9      69 ..       1     126 [. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.4e-05
                XXXX.XXX--HHHHHHHHHHHHHHHHHHHHHHTTS-S..--GGGGS--SHHHHHHHHT-EEEEE CS
     DUF3365 14 lrsq.krqaeeealekarllaeqleavreyvakslkptivpayaareiaeefsekrkgysyket 76
                ++++ +++ +++++++ +++ +++e++ + + k+  p   p++ +r  + + ++k++  +yk t
  CCE30079.1  9 MQQHsQQHSQQQLQQQTQMMQQMMEQMTKLTVKQPTP-RTPTTPTR--STRNNDKNPTGTYKLT 69
                3334377799999999999999999998888888776.33333333..3333333322233332 PP

>> IL11  Interleukin 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   8.5   0.00023      0.37      83     136 ..       3      55 ..       2      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00023
        IL11  83 LkkvskkskhslepklgelisklkrLlkslqllmskleaprvpvvspslppssa 136
                 L+++++ ++hs +++ ++l++++ ++++++ ++m+kl ++++++ +p+ p  s+
  CCE30079.1   3 LQTMQQMQQHSQQHSQQQLQQQT-QMMQQMMEQMTKLTVKQPTPRTPTTPTRST 55 
                 7889999***************9.77888889************9999987754 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  11.6   0.00016      0.26     165     256 ..       8      82 ..       1     155 [. 0.38

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
       TFIIA 165 qsqgsaaqssvaalqaqsqqaqalaepqqqlekqqqqqqqqqqqqqqq.qvqqqqqe...esqqaqqa.sqeqvagsqvessqtdgaedaleeespv 256
                 q q++ +q+s ++lq+q+                  q++qq ++q+ + +v+q + +   +   ++++  +++ +++++++ +  + e ++++++++
  CCE30079.1   8 QMQQHSQQHSQQQLQQQT------------------QMMQQMMEQMTKlTVKQPTPRtptT---PTRStRNNDKNPTGTYKLTYVNTE-SDKSDTSM 82 
                 111111111111111111..................1111111111111111111111110...111111111111111111111111.11111111 PP

>> DUF2868  Protein of unknown function (DUF2868)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.1    0.0002      0.32     138     225 ..       6      97 ..       1     127 [. 0.64

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0002
     DUF2868 138 sllrqrralarlpldlslpgyqaLlarlqtpsletgvndaaapePeaapepkaeaepepasep.advlelelderla.....elelraglgvrv 225
                 +  +q+ ++++ + +  l++ ++++++++++++++ v++++ + P++ ++ + ++ ++p+++   +++++e d++++      + l+++++++v
  CCE30079.1   6 MQQMQQHSQQHSQQQ--LQQQTQMMQQMMEQMTKLTVKQPTPRTPTTPTRSTRNNDKNPTGTYkLTYVNTESDKSDTsmpdaASPLNQTTRHSV 97 
                 333444445555555..888999999999999**999888555555555555555555444435556666666666566655555555555554 PP

>> Herpes_DNAp_acc  Herpes DNA replication accessory factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   8.2   0.00024      0.39     288     374 ..       1      94 [.       1     130 [. 0.70

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00024
                      EE-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX...........................XXXXXXXXXXXXX CS
  Herpes_DNAp_acc 288 vLldaaeevkaaataeepedsqevssslsdsrrkpespspdsP.prtpelPaspledkeedaasd.......eeslkeeP.ttakPaapsksse 372
                      +Ll++ +++++ +++  +++ q+ ++ +++  ++ ++    +P prtp++P++   +++++ + +            ++  t+ + aa++ +++
       CCE30079.1   1 MLLQTMQQMQQHSQQHSQQQLQQQTQMMQQMMEQMTKLTVKQPtPRTPTTPTRSTRNNDKNPTGTykltyvnT--ESDKSdTSMPDAASPLNQT 92 
                      589999999999999999999999999999988887777775549******9996666655555467777542..2333313333344444344 PP

                      XX CS
  Herpes_DNAp_acc 373 ka 374
                      ++
       CCE30079.1  93 TR 94 
                      33 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   8.0   0.00029      0.47      55     122 ..       2      70 ..       1      77 [. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00029
    RasGAP_C  55 leetlktLseknnyl.esqlesYkayienvleqlkkkkgklpfskqyfk.krelkksgklpkfgsykysa 122
                 l +t+++++++++++ ++ql++  + +++++eq++k   k p+ +   +  r+ ++++k p +g+yk + 
  CCE30079.1   2 LLQTMQQMQQHSQQHsQQQLQQQTQMMQQMMEQMTKLTVKQPTPRTPTTpTRSTRNNDKNP-TGTYKLTY 70 
                 5689*******99873578***************999866333333333044445555555.59999886 PP

>> DUF4134  Domain of unknown function (DUF4134)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.4    0.0009       1.5       7      42 ..       4      39 ..       1      41 [. 0.84

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0009
     DUF4134  7 lvlaalsafAqskGaagiseatsevasyfdpvtkli 42
                 ++ +++  +q+++++ ++++t++++++++ +tkl+
  CCE30079.1  4 QTMQQMQQHSQQHSQQQLQQQTQMMQQMMEQMTKLT 39
                5566677778888*********************97 PP

>> MAP65_ASE1  Microtubule associated protein (MAP65/ASE1 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  13.6   0.00082       1.3     418     507 ..       8      98 ..       1     157 [. 0.64

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00082
                 ..HHHHHHHHHHHHHHHHHHHHHHHCXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  MAP65_ASE1 418 kyqererqksarklkkasqteeeilkgskmrtpskrrvtapkTPsklksmskvssssss...lkktpsnskslsankntalstanerkrklps 507
                 + q+ ++q s+++l++++q  ++++ + +++t ++++   p TP   +s+++  ++ ++   l    ++s  +  + + a+s  n+  r   +
  CCE30079.1   8 QMQQHSQQHSQQQLQQQTQMMQQMMEQMTKLTVKQPTPRTPTTPT--RSTRNNDKNPTGtykLTYVNTESDKSDTSMPDAASPLNQTTRHSVT 98 
                 235677889999999999999999999999999999999999997..5666666666665554433333333333334455544443333332 PP

>> Androgen_recep  Androgen receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.1    0.0011       1.8     186     210 ..       5      29 ..       2     107 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0011
  Androgen_recep 186 tmqllqqqqqehhhqqhqhqqqqqq 210
                     tmq +qq  q+h +qq q+q q  q
      CCE30079.1   5 TMQQMQQHSQQHSQQQLQQQTQMMQ 29 
                     5555555555544444444433322 PP

>> TraG_N  TraG-like protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   7.2     0.003       4.9     249     320 ..       3      82 ..       2      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.003
      TraG_N 249 kdalsaasqyltgvsssa.saediirqallinalkdg.sq......tlanlvdrsaaaaglaaasaalataqaeaqqnss 320
                  +++++ +q  +++s++  +++  ++q+++ +++k    q      t++++++r++ ++ + +  +++  ++++++ +s+
  CCE30079.1   3 LQTMQQMQQHSQQHSQQQlQQQTQMMQQMMEQMTKLTvKQptprtpTTPTRSTRNNDKNPTGTYKLTYVNTESDKSDTSM 82 
                 57899999999999999888899999999998866665338899999999999999999999999999999888877765 PP

>> DUF945  Bacterial protein of unknown function (DUF945)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  13.5    0.0063        10     297     336 ..       3      44 ..       1      91 [. 0.63

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0063
      DUF945 297 qeaynqlqakala..kaeeqlqeqleeallealpkLlakgpe 336
                  ++++q+q+ +++  +++ q+q q++++++e+++kL  k+p+
  CCE30079.1   3 LQTMQQMQQHSQQhsQQQLQQQTQMMQQMMEQMTKLTVKQPT 44 
                 445555555555555777777777888888888888777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4743  (0.264543); expected 358.6 (0.02)
Passed bias filter:                     2072  (0.115567); expected 358.6 (0.02)
Passed Vit filter:                       322  (0.0179597); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 1164.98
//
Query:       CCE30080.1  [L=1907]
Description: related to transport protein USO1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00023   21.1   1.8    0.00023   21.1   1.8    9.7  9  Apolipoprotein  Apolipoprotein A1/A4/E domain
     0.0026   17.2   0.1      0.062   12.8   0.0    3.3  4  KNOX2           KNOX2 domain
  ------ inclusion threshold ------
       0.12   12.6   1.8        1.2    9.3   0.3    2.9  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.71    9.7   3.8         13    5.6   0.2    3.4  2  CCDC92          Coiled-coil domain of unknown function


Domain annotation for each model (and alignments):
>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2     0.068   3.1e+02      22      65 ..     236     281 ..     209     296 .. 0.52
   2 ?   -3.5   0.1       1.8   8.2e+03      88     103 ..     388     403 ..     370     437 .. 0.52
   3 ?    2.6   6.4     0.025   1.1e+02      85     154 ..     482     552 ..     455     631 .. 0.63
   4 !   21.1   1.8   5.2e-08   0.00023      50     165 ..     721     841 ..     717     904 .. 0.81
   5 ?   -8.6  20.2         4   1.8e+04      35     147 ..    1114    1238 ..     966    1260 .. 0.83
   6 !   13.7  12.4   9.3e-06     0.042      46     183 ..    1182    1327 ..    1176    1334 .. 0.68
   7 !    6.9  11.2    0.0012       5.4       4     117 ..    1319    1434 ..    1318    1441 .. 0.81
   8 ?    1.2  10.4     0.063   2.8e+02      74     162 ..    1495    1578 ..    1478    1589 .. 0.77
   9 ?   -3.7  15.1         2   9.1e+03       3     141 ..    1515    1659 ..    1513    1668 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.068
                     CHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHCCCCHHHHHHCCC CS
  Apolipoprotein  22 plaqelrdrlskeleelrarl...raeleevrarlepyrdevqeqlg 65 
                      l+  +++ l ke  +l++r    +++l +++++ +++ ++v++ l 
      CCE30080.1 236 TLTN-IATSLQKEMSALTRRSrdnATDLLSLKEATKTRDEDVRKSLR 281
                     3322.344444444444444433333344444444444444433332 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.8
                     HCHHCCHHCHCCHCHH CS
  Apolipoprotein  88 adaeelqeqlavyaee 103
                      +++el e +++ +e+
      CCE30080.1 388 SKVDELAEYVRSQSEN 403
                     2444444444443333 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.025
                     HHHHCHHCCHHCHCCHCHHHHHHHHHH.HHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSS CS
  Apolipoprotein  85 rlaadaeelqeqlavyaeelrerlerh.vealkarlapyveelrqklaerleelkeslaphaeeveerlss 154
                      ++a ++el+  +   ++el +rle+  v+++ +   p  +e+   ++e le++ke+l++ ++e + + ++
      CCE30080.1 482 EVKALVRELRGEVLGMGRELGKRLEHVgVKSIEDSEPPSKDEVSRVIDEGLEQMKEQLNNVLREHRRQSAQ 552
                     45555555666666666666666665446666666666666666666666666666666665555533222 PP

  == domain 4  score: 21.1 bits;  conditional E-value: 5.2e-08
                     HHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHH...HHHHHHHHHHHHHHHHC..HHHHHHHHHHHHHHHHHHH CS
  Apolipoprotein  50 rarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaee...lrerlerhvealkarla..pyveelrqklaerleelke 139
                       +l+p  de+ ++l++ +e ++ +  ++++e +e laa+ +++   l++ +++   lr  +e  v+++ +  +   ++e l   ++e  ee+++
      CCE30080.1 721 AVALAPNHDEIVTRLQDIMEYMKLEFRALSDEAKENLAANGRDADHVLDATKDGldnLRIAIEGYVDRVSSATDhdGFMETLTRTMDEFKEEVSK 815
                     56788888888888888888888888888888888888888888888888888877778888888888888887667888888999999999999 PP

                     -----..-----SSSHHHHHHHTS-T CS
  Apolipoprotein 140 slaphaeeveerlssrveelreklee 165
                      + ++++ ++e l++++e lre ++ 
      CCE30080.1 816 VVSEAKDDSREHLHNEIESLREIVNS 841
                     99999999999999999999998876 PP

  == domain 5  score: -8.6 bits;  conditional E-value: 4
                      HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHH....HHHHHHHCCHHHHHHHH......HHHHCHHCCHHCHCCHCHH...HHHHHHHHHHH CS
  Apolipoprotein   35 leelrarlraeleevrarlepyrdevqeqlgqn....leelrqrlapyteelre......rlaadaeelqeqlavyaee...lrerlerhvea 114 
                      le l  +l+  lee +++ e+  +  +e+ +++    +e++  +++++++ l+       + ++d+ +l+  l+  +e+   l e++ +++++
      CCE30080.1 1114 LETLVTQLSLTLEEMKEKSEQTPSTEEEMATKSgveaVEAVVLEIKTALDGLAStdfatfSNKEDVSNLETVLKDAKEKidaLSESTVKAMDD 1206
                      445556666677777777777666666666553222278888889999999999999999888899999999999888877788888888888 PP

                      HHHHHCHHHHHHHHHHHHHHHHHHH-----..- CS
  Apolipoprotein  115 lkarlapyveelrqklaerleelkeslaphaee 147 
                       +a +   ++++ + ++  lee++e +++++ee
      CCE30080.1 1207 RQAEIVGVADRVTE-VKTFLEEFQEAFKAKLEE 1238
                      89999999999988.999999999999998887 PP

  == domain 6  score: 13.7 bits;  conditional E-value: 9.3e-06
                      HHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHH..........HHHHHHHHHHHHHHHHCHHHHHHHH CS
  Apolipoprotein   46 leevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaee..........lrerlerhvealkarlapyveelrq 128 
                      le+v +  ++++d++ e   + +++ ++++   +++++e ++  +ee qe+ +++ ee          l e++++++++  + ++++v e+++
      CCE30080.1 1182 LETVLKDAKEKIDALSESTVKAMDDRQAEIVGVADRVTE-VKTFLEEFQEAFKAKLEEgssgvegltkLFEGMSEKIDKN-ESVGEDVKEMFE 1272
                      455555555555555555555555555555555555533.4445555555555555555555555555555555555543.679999999999 PP

                      HHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XXXXXXXX CS
  Apolipoprotein  129 klaerleelkeslaphaeeveerlssrveelrekleeqaeelrerleanleelka 183 
                       ++ + ee ke +a +  e+ e+l++ ++++ +k ee+ +el ++ ++++  +++
      CCE30080.1 1273 AMKTHFEENKEVVAGARLESNEKLQEAADNIGTKIEEKMAELIAKQDEFKTAMEQ 1327
                      99***********************************999998888888776665 PP

  == domain 7  score: 6.9 bits;  conditional E-value: 0.0012
                      HCCCCHHHHHCCHHHCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHC CS
  Apolipoprotein    4 esldelkayaeeleeqlaplaqelrdrlskeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeq 96  
                      + ++++ +++++ +e  +  ++ +++     +e+l+  +++  ++v+++le +++e+ +++ +++e+l +r ++ t e ++ +++ +e+++++
      CCE30080.1 1319 DEFKTAMEQKSDANEARGLETEAAVASTKTIAEDLKLLIDTLGSTVTDSLE-KMEEASKTVFSKVEDLAARTEENTTEGKAEHEQTLEQIRQA 1410
                      677888888888888888888877777777777777777666777777775.799***********************************999 PP

                      HCCHCHHHHHHHHHH....HHHHHH CS
  Apolipoprotein   97 lavyaeelrerlerh....vealka 117 
                       ++  e+l+ ++++     +ea+k+
      CCE30080.1 1411 ATA-VEGLQGEMKETqpqiLEAVKD 1434
                      776.999999999885555666555 PP

  == domain 8  score: 1.2 bits;  conditional E-value: 0.063
                      HCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHT CS
  Apolipoprotein   74 rlapyteelrerlaadaeelqeqlavyaeelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrek 162 
                      ++++ +e+l+e+ + d   +qe+l++    l ++  +++ ++ ++l+  +++++q++ + + e+++ l ++++++e++ ++r + lre+
      CCE30080.1 1495 EVKTKLEQLAEQQKSDGTSVQEKLDK----LVDHSTTSAPQVVSQLE-TLDKVHQSVVHTAAEISRFLSDQTQRIEDEHEDREKMLRET 1578
                      56777777777777777777777776....55556666666666666.67888899999999999999999999999999988888875 PP

  == domain 9  score: -3.7 bits;  conditional E-value: 2
                      HHCCCCHHHHHCCHHHCHHCHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCH CS
  Apolipoprotein    3 eesldelkayaeeleeqlaplaq.elrdrlskeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelq 94  
                      +e+ld+l+    +  +q+ +  q e+ d++ +      a++++ l+++++r+e+  ++ +++l ++  el ++la+  +  +  l+++ ee +
      CCE30080.1 1515 QEKLDKLVDHSTTSAPQVVS--QlETLDKVHQSVVHTAAEISRFLSDQTQRIEDEHEDREKMLRETNLELERKLAERDHVEASILSLRDEEER 1605
                      67777777777777777776..44799**********************************************99876665555554444444 PP

                      HCHCCHCHH........HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-- CS
  Apolipoprotein   95 eqlavyaee........lrerlerhvealkarlapyveelrqklaerleelkesl 141 
                       + +vy+           ++rl+  v++l + l    eel + +++r+e l++++
      CCE30080.1 1606 VRSSVYKLRneqeglikQKTRLAGDVGSLETALRLRKEELSD-MEHRAESLERRI 1659
                      444444433323334333334444455555555555555544.777777777665 PP

>> KNOX2  KNOX2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.5   6.7e+03      29      41 ..     204     216 ..     203     217 .. 0.85
   2 ?   -3.2   0.0       1.4   6.1e+03      20      31 ..     533     544 ..     522     545 .. 0.66
   3 !   12.8   0.0   1.4e-05     0.062       9      34 ..     796     821 ..     789     830 .. 0.91
   4 ?   -1.0   0.0      0.28   1.3e+03      19      47 ..     867     895 ..     862     895 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.5
       KNOX2  29 pveEAteFlreie 41 
                 p++EA  +l++i+
  CCE30080.1 204 PLREAEPALSNIT 216
                 8999999999986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.4
       KNOX2  20 vkYkeeLtrpve 31 
                  + ke+L ++++
  CCE30080.1 533 EQMKEQLNNVLR 544
                 445666666666 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 1.4e-05
       KNOX2   9 DqFMeaYcdvLvkYkeeLtrpveEAt 34 
                 D FMe+  + + ++kee +++v EA+
  CCE30080.1 796 DGFMETLTRTMDEFKEEVSKVVSEAK 821
                 99***********************7 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.28
       KNOX2  19 LvkYkeeLtrpveEAteFlreieqqLqsL 47 
                 L++ ++e  rp  E  e l  i++ L++L
  CCE30080.1 867 LTSLRQEILRPRPETSEILDAIQDGLNDL 895
                 7899*******************999987 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3   0.00028       1.2      18      49 ..    1338    1374 ..    1336    1377 .. 0.81
   2 ?    0.9   0.1      0.12   5.5e+02      18      46 ..    1493    1521 ..    1490    1524 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00028
                      H.HHSSB-HHHHHHHHTS....-HHHHHHHHHHHHHT CS
  Fe_dep_repress   18 e.ekkvvktkdlaerLnv....spssVsemlkkLekd 49  
                      e e +v++tk +ae L+      +s+V+ +l+k+e++
      CCE30080.1 1338 EtEAAVASTKTIAEDLKLlidtLGSTVTDSLEKMEEA 1374
                      44899*********9875222279**********985 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.12
                      HHHSSB-HHHHHHHHTS-HHHHHHHHHHH CS
  Fe_dep_repress   18 eekkvvktkdlaerLnvspssVsemlkkL 46  
                      +++++ k  +lae  +  + sV+e l kL
      CCE30080.1 1493 DSEVKTKLEQLAEQQKSDGTSVQEKLDKL 1521
                      577788889*******************9 PP

>> CCDC92  Coiled-coil domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.5     0.022        97      24      34 ..     827     837 ..     825     840 .. 0.88
   2 ?    5.6   0.2     0.003        13      18      35 ..     856     873 ..     854     874 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.022
      CCDC92  24 gLHkEIekLqk 34 
                  LH+EIe+L++
  CCE30080.1 827 HLHNEIESLRE 837
                 6********96 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.003
      CCDC92  18 haatLkgLHkEIekLqke 35 
                 h+++L++LH+ + +L++e
  CCE30080.1 856 HQEVLDALHNGLTSLRQE 873
                 ****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1907 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2015  (0.112388); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.64u 0.37s 00:00:02.00 Elapsed: 00:00:00.55
# Mc/sec: 10411.40
//
Query:       CCE30081.1  [L=304]
Description: probable YHM1 (mitochondrial carrier) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-29  102.1   1.0    4.7e-15   55.3   0.0    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   8.8e-07     0.016       4      87 ..      14      99 ..      11     109 .. 0.68
   2 !   29.2   0.0   3.5e-11   6.3e-07       8      94 ..     127     204 ..     120     206 .. 0.86
   3 !   55.3   0.0   2.6e-19   4.7e-15       3      92 ..     212     297 ..     210     301 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.8e-07
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS.STTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  4 svlkellaGglagavatlvttPldvvKtrlqtqkks.skksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlye 87
                s ++++l +g ag+++  + +P+d++  rl++++++ s+ +++++ i++ + +      + +l+ Gl+ +    + +++ k +   
  CCE30081.1 14 SNVARILGSGSAGIAELAIFHPVDTIAKRLMSNQSRvSSVAQYNQiIFKDMASASAGRKFISLFPGLGYAAGYKVLQRVYKYGGQP 99
                567889999***************99888877666615555555466666666666666777888887776666666666655555 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 3.5e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 +  aG+l g++  ++  Pldv+K++ qt+++  + ++       +  i+++eG+ glyrG++ +  r+ap s++ f+   + k++++
  CCE30081.1 127 HSTAGSLIGIG-EVMLLPLDVLKIKRQTNPEAFRGRG-------VFAIIRDEGF-GLYRGWGWTAARNAPGSFALFGGSAFAKEYIF 204
                 66778888876.66778****************9965.......4589*****9.**********************9999999875 PP

  == domain 3  score: 55.3 bits;  conditional E-value: 2.6e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrl 92 
                  +++++++a+ ++++++ +v +Pldv+Ktr+q+ + ++ +s+    +++l+++ ++eG++++++Gl+p+ll++ p+ +  f+l +tl+  
  CCE30081.1 212 ATWYQNFVASIAGASASLVVSAPLDVIKTRIQNRNFENPESG----FRILSNMARQEGFSSFFKGLVPKLLMTGPKLVFSFWLAQTLIPA 297
                 568899999999999999999****************99975....78*********************************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2222.94
//
Query:       CCE30082.1  [L=654]
Description: related to DNA-directed RNA polymerase III chain RPC82 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-51  173.3   0.0    2.1e-48  165.3   0.0    2.4  2  RNA_pol_Rpc82  RNA polymerase III subunit RPC82
      3e-15   56.1   0.2    6.9e-14   51.7   0.3    2.7  2  HTH_9          RNA polymerase III subunit RPC82 helix-turn-he
      0.003   17.4   0.2      0.052   13.4   0.0    2.9  3  TFIIE_alpha    TFIIE alpha subunit


Domain annotation for each model (and alignments):
>> RNA_pol_Rpc82  RNA polymerase III subunit RPC82
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0019        11      98     156 ..      71     136 ..      39     154 .. 0.83
   2 !  165.3   0.0   3.5e-52   2.1e-48       3     258 .]     160     487 ..     158     487 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0019
                    E-TSSE.EEE-SHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHTSTSS-GSS-TTS......H CS
  RNA_pol_Rpc82  98 ldpglv.lriNlerflvhlRdeaLvqlaksrigettaevyeaaLklleersprlsadll......l 156
                    +d +++ + +N + +    R+  + + +++r+g      ++++ +l ++++ +l++ ++      +
     CCE30082.1  71 PDTRVTnYEANSDACYNLVRSGKILEVINDRYGNAERDLVQTLMQLGYAKIADLEHAFTsrapkvN 136
                    5555556889**********************************************9986555541 PP

  == domain 2  score: 165.3 bits;  conditional E-value: 3.5e-52
                    HHHHHTTSSEEESSSTTTS-HHHHHHHHHHHTHTTSSSSSSSSTHHHHHHHHHHHHHHHHHHHHHHHSGT....T..TTCETSSSSSEE....... CS
  RNA_pol_Rpc82   3 fvkLveagflqrvpslhfrpiedlwnalyeeelkktprssttseikkkaeakekiktelrdlresseslkkkegrstadstsngtarKrrk..... 93 
                    + +L++a+ l++v +  fr + +++  ++++++k  p   + +  k k+e++++++++ +++r++++ lk    r  +++  + t+r++ +     
     CCE30082.1 160 LGRLIQAEILETVRPESFRNPSEMYREIEADVTKTGP---GEKAAKNKIEMHMQVVERYKTFRDQTKGLK----RHLDQTSGPITKRRKLRnssah 248
                    569***********************99999999988...99****************************....77777777777777766889** PP

                    ...........E-TSSEEEE-SHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHTSTSS-GSS-TTS.HHHHHHTTTCSCSSTHHHH-STT--- CS
  RNA_pol_Rpc82  94 .......etealdpglvlriNlerflvhlRdeaLvqlaksrigettaevyeaaLklleersprlsadll.leeedkksitftandiaralpksldl 181
                           + + l+p++v+r+N+er+lv+lR+++Lv++a + +g  t+evy+a+L ll+ ++ r++ad+l  e++ ++s t+t+++i+++l+ ++++
     CCE30082.1 249 qddyvfdDAPNLNPNVVVRVNYERCLVELRNQRLVDYAVDQLGGATGEVYRALLDLLTVKLARCRADPLtGEQNYDPSTTVTTMQIYEHLSDDVNV 344
                    *******************************************************************99899999********************* PP

                    -----------------.-----................-----------.............................................. CS
  RNA_pol_Rpc82 182 sksigKrkssnssaaek.kklkt................eeseeeseeng.............................................. 214
                    s++igK ++ +  ++e+ +k+++                +         +                                              
     CCE30082.1 345 SGGIGKPSK-DLIDTESaEKIRPgpysydsdsdsdsdsgT---------Dakpiakpaapprgrmakavsaaaaaaaaaaereakfdddddedgdr 430
                    ****99993.333333336777776798765444444440.........14455555555555555556666666666666666666666666677 PP

                    .............---HHHHHHHHHHHHHSSSSSSCSEET...TEBE-SSTTTHHHH CS
  RNA_pol_Rpc82 215 .............qarlslieqhLklLasdsleflrkigpsggGeytVdfsrlieqL 258
                                 ++r+++ + hL lL++++  f+r++g+ g G+++Vdf+ l+++L
     CCE30082.1 431 qttvkfedgaapkESRIEQMRNHLLLLSESKHRFVRHSGKHGRGQWAVDFDLLMDRL 487
                    788999999*********************************************987 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.3   1.1e-17   6.9e-14       1      58 [.       9      66 ..       9      70 .. 0.95
   2 ?    0.9   0.0     0.081   4.8e+02       5      35 ..      96     126 ..      94     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1.1e-17
                HHHHHHHHHCSTTHHHHHHHHHHHHSSBEHHHHHHHHSSTHHHHHHHHHHHHHTTSEE CS
       HTH_9  1 elcteiieehFGevvakVvetLlrkgrltlrelvkktkLsldqVkksLvvLiqhrlVq 58
                elc +++ ++FGe+++++   L++kgr t+++l+++t+Ls + ++++L vLiq +l  
  CCE30082.1  9 ELCALLVNDLFGELPSRILVALFAKGRCTISQLIQQTSLSSRHIRNGLGVLIQQNLLY 66
                69*****************************************************975 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.081
                 HHHHHCSTTHHHHHHHHHHHHSSBEHHHHHH CS
       HTH_9   5 eiieehFGevvakVvetLlrkgrltlrelvk 35 
                 e+i + +G   +  v+tL++ g   + +l +
  CCE30082.1  96 EVINDRYGNAERDLVQTLMQLGYAKIADLEH 126
                 789999**************99887777765 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   8.7e-06     0.052       1      98 [.       9     111 ..       9     115 .. 0.88
   2 ?   -0.5   0.0      0.19   1.1e+03      46      60 ..     272     286 ..     261     314 .. 0.85
   3 ?   -1.2   0.0      0.31   1.8e+03      18      70 ..     507     560 ..     495     597 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.7e-06
                  HHHHHHHHHCS-HHHHHHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEEEEEE.....TTTEEEEEEEEEECCCHCCCHHHHHHHHH CS
  TFIIE_alpha   1 ellkevvrkfygeeavlvldvLlekgevteedlakelkidlnelrklLnrLyearlvkykrrrd.....eekswykyywrinyeklvdvvkrkleevv 93 
                  el + +v   +ge    +l +L  kg  t  +l +++++    +r+ L  L ++ l   +   d      e +    y ++   k+++v+ ++  +  
   CCE30082.1   9 ELCALLVNDLFGELPSRILVALFAKGRCTISQLIQQTSLSSRHIRNGLGVLIQQNLLYHHADPDtrvtnYEANSDACYNLVRSGKILEVINDRYGNAE 106
                  577889999************************************************9999888777656677777899999********99998888 PP

                  HHHHH CS
  TFIIE_alpha  94 kkLee 98 
                  ++L +
   CCE30082.1 107 RDLVQ 111
                  87765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.19
                  HHHHHHHHCTSEEEE CS
  TFIIE_alpha  46 klLnrLyearlvkyk 60 
                  + L +L+++rlv+y 
   CCE30082.1 272 RCLVELRNQRLVDYA 286
                  578899999999985 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.31
                  HHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEEEE.EETTTEEE CS
  TFIIE_alpha  18 vldvLlekgevteedlakelkidlnelrklLnrLyearlvkykrr.rdeekswy 70 
                     +L ekg++ e  l     +++  +   + +++  +lv+++   rd++    
   CCE30082.1 507 LTRILREKGKLDEKVLPSAALMKKSDVQGKMLAMQMGGLVDVQEVpRDNSRLAN 560
                  556788899999999999999999999888888888899998875255444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 4800.56
//
Query:       CCE30083.1  [L=457]
Description: probable ubiquinol-cytochrome c reductase complex core protein 2 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-17   63.3   0.1    4.1e-17   62.5   0.1    1.3  1  Peptidase_M16    Insulinase (Peptidase family M16)
    2.6e-11   43.9   0.0    4.1e-11   43.2   0.0    1.3  1  Peptidase_M16_C  Peptidase M16 inactive domain
  ------ inclusion threshold ------
      0.069   13.4   0.0       0.23   11.7   0.0    1.8  2  DUF2551          Protein of unknown function (DUF2551)
        0.6   10.9   3.2       0.71   10.6   1.1    2.2  2  LEA_3            Late embryogenesis abundant protein


Domain annotation for each model (and alignments):
>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.1   9.1e-21   4.1e-17       2     145 ..      48     188 ..      47     191 .. 0.94

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 9.1e-21
                    EEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHS CS
  Peptidase_M16   2 valesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfka 97 
                    va++++ + +t+++++v +aG ry p   +Gl+  le  afk+T+++++ ++ +e+e lGg+l+At +re  v  +++l++dl++  ++la+v+  
     CCE30083.1  48 VASRDA-HGPTAKLAIVAKAGTRYQPL--PGLTVGLEEYAFKNTQRRSALRINREAELLGGQLQATHTREALVLEASFLRDDLPYFTELLAEVVSM 140
                    666666.9****************995..6****************************************************************** PP

                    BTTSHHHHHHHHH.HHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHS CS
  Peptidase_M16  98 plleesevererk.vvekeveavdaepekvveenlhaaayrekalgrsl 145
                    ++ + +e+++e + v + + + ++a+ ++++++n ha a+  + lg+++
     CCE30083.1 141 TKYTTHELHEEIEpVFNIKQASFNANASALALDNAHAVAFH-NGLGSPI 188
                    *************9999999********************9.7787776 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   9.1e-15   4.1e-11       1     181 [.     199     376 ..     199     378 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 9.1e-15
                      CH-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHT CS
  Peptidase_M16_C   1 sltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskende 94 
                      +l+ e +  + +  Y+  n+ +++ G  +  +l +++ k+f d++a++  ++  + +++   t+ +++ +  ++    +++ +af+g +     
       CCE30083.1 199 YLNEEYIARYADVVYSKPNIAVVADG-ASASDLSSWVTKFFQDVPATS--QSGESLKTVA-STYHGGEQRTSHQA--GNSMVIAFPGSNA--AG 284
                      58899999******************.*******************98..5555555555.56777777777777..7************..89 PP

                      THHHHHHHHHHHHSS......TTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH CS
  Peptidase_M16_C  95 ddlalavlntlLggg......mesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeglteeelerakn 181
                          +avl+ lLgg       + ++L ++ +  + ++ sv+  n  y+d gl++i++++    v ++ e + k l+++++  ++++++++a +
       CCE30083.1 285 SKPEIAVLAALLGGKstikrsAGFSLLSKAT-ASTPGLSVETTNLAYTDAGLLTIQLSGSAASVRKAAEETGKILKNIANGTVSKDDITKAVS 376
                      9999*****************9999999999.9999*****************************************************9986 PP

>> DUF2551  Protein of unknown function (DUF2551)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.1e-05      0.23      11      45 ..     128     162 ..     119     168 .. 0.85
   2 ?   -2.9   0.0       1.8   8.1e+03      25      45 ..     365     386 ..     357     406 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.1e-05
     DUF2551  11 GiRrevLklfleakkltveeiyeklkekfdvsykg 45 
                  + +e+L  ++++ k+t++e++e+++  f++++ +
  CCE30083.1 128 PYFTELLAEVVSMTKYTTHELHEEIEPVFNIKQAS 162
                 555789999**********************9876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
     DUF2551  25 kltveeiyeklkek.fdvsykg 45 
                 ++  ++i +++++  fd+  +g
  CCE30083.1 365 TVSKDDITKAVSNAkFDILEQG 386
                 5566788888887778886655 PP

>> LEA_3  Late embryogenesis abundant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.1   0.00016      0.71       8      45 ..       8      46 ..       2      66 .. 0.74
   2 ?   -2.8   0.0       2.5   1.1e+04      34      50 ..     344     360 ..     328     377 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
       LEA_3  8 akalsalvaeslslaiv.rrgYaaaaaaaavkeaaeasa 45
                 k++ ++v +s s     rrg+aaaa+++a++ a  ++ 
  CCE30083.1  8 TKSAQQAVRRSCSVLPLqRRGFAAAASSGAFETAEVSGL 46
                566777888888877766**********99887654444 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.5
       LEA_3  34 aaavkeaaeasaaaska 50 
                 aa+v++aae+++++ k+
  CCE30083.1 344 AASVRKAAEETGKILKN 360
                 34444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3389.42
//
Query:       CCE30084.1  [L=883]
Description: related to PBP1-Pab1p interacting protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-25   89.3   1.2    1.8e-25   89.3   1.2    2.6  2  LsmAD      LsmAD domain
  ------ inclusion threshold ------
        1.1    9.2   5.9         10    6.2   3.0    3.4  2  ATP_sub_h  ATP synthase complex subunit h
        2.4    8.1   5.4          5    7.1   5.4    1.5  1  DUF4484    Domain of unknown function (DUF4484)


Domain annotation for each model (and alignments):
>> LsmAD  LsmAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   1.2     3e-29   1.8e-25       1      71 []      79     153 ..      79     153 .. 0.95
   2 ?    0.5   1.9      0.15   9.1e+02      21      45 ..     355     379 ..     348     404 .. 0.66

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 3e-29
       LsmAD   1 FgvkstYdEnlYTtkldksspeykereaeAeriArEIessastnahvaeerglkv....ddsgldEEdkYSaVrR 71 
                 Fg+k++YdEn+YTt ++k++p+++er+a+Aer+A+EIe+sa  +ahvaeer +++       +++EEdkYS+VrR
  CCE30084.1  79 FGLKTDYDENIYTTAINKTHPQFRERMAAAERKAKEIERSAPVTAHVAEERIMDYvsgtGVGQENEEDKYSGVRR 153
                 9****************************************************99998555559*********99 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.15
       LsmAD  21 peykereaeAeriArEIessastna 45 
                  + ke +a+A + A+E+++++++ a
  CCE30084.1 355 AKQKEIQAKAMKNAEEMKKNKAEAA 379
                 5567888999999999999966543 PP

>> ATP_sub_h  ATP synthase complex subunit h
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.0    0.0017        10      23      61 ..     363     403 ..     358     409 .. 0.78
   2 ?    1.5   0.0     0.051   3.1e+02      35      49 ..     468     482 ..     458     484 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0017
   ATP_sub_h  23 kayk.pkplkaadaegaVkkwsaPaaPka..PeleadlaseL 61 
                 ka+k ++++k+++ae+aVk+ ++P+ ++a  P+ ea++as +
  CCE30084.1 363 KAMKnAEEMKKNKAEAAVKELNQPKDATAakPS-EAQSASGV 403
                 77776677889*************876542288.99888765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.051
   ATP_sub_h  35 aegaVkkwsaPaaPk 49 
                  + +V+ +s+P+aP+
  CCE30084.1 468 RQVEVQRFSQPPAPS 482
                 5779**********7 PP

>> DUF4484  Domain of unknown function (DUF4484)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.4   0.00083         5      37     141 ..     269     390 ..     248     416 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00083
     DUF4484  37 aaLLadl...apastsvsas............slaslaaeeeseereeaeeeeeeeearkelaiiaYFhrLTtqilsvladivdssdeekeddeddeee 120
                 +aLL+++    p+ +++sa+            s as ++ +++e+ ++++++ ++e + +el   a   +LTt + + l  i+++  +++++ + +  +
  CCE30084.1 269 SALLSRNssvLPKDNTLSATstverdvlnsfkSFASQQR-QNAEKARSNKARADKEVKLTELKKFANNFKLTTPVPTDLVSIIAKDPAKQKEIQAKAMK 366
                 455554323322222222223445566663334444444.33344444445556677789999999999**************7775442222222111 PP

     DUF4484 121 lde...eeedeeeeeeeaeeeeee 141
                 + e   ++++e + +e ++ ++++
  CCE30084.1 367 NAEemkKNKAEAAVKELNQPKDAT 390
                 111011112222222333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1255  (0.0699983); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 6294.41
//
Query:       CCE30085.1  [L=387]
Description: related to RNQ1-prion, epigenetic modifier of protein function [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-08   34.8   0.1    2.6e-08   33.8   0.1    1.6  1  WW        WW domain
  ------ inclusion threshold ------
        2.1    8.2   7.8        2.7    7.8   7.8    1.3  1  SPX       SPX domain


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   2.9e-12   2.6e-08       1      31 []      19      49 ..      19      49 .. 0.98

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.9e-12
                X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31
                LP+GW++qwd  s ++YY+   Tg  qWe P
  CCE30085.1 19 LPSGWIAQWDGASRKYYYVQIATGAAQWEIP 49
                8****************************98 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.8   0.00031       2.7      66     132 ..     244     309 ..     173     380 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00031
         SPX  66 pstsaaadesgnsaadasssepkdeaeslprrsplsrssrssssygglvssppsansssssddsses 132
                 + +++  ++s++saa++sss ++++a+++++++++ +ss +s++ ++ +++p++ +++++++ s  +
  CCE30085.1 244 TYNPPGGTHSASSAAPHSSSHTPSSATNQSHQQHS-SSSHHSQAHQSYPPPPSQGHNANQHSGSTYQ 309
                 44555666667777777777777777777777777.5666666666666666666666666554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3137.53
//
Query:       CCE30086.1  [L=237]
Description: uncharacterized protein CPUR_03934 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-07   29.6   0.0    8.4e-07   29.0   0.0    1.5  1  Pga1      GPI-Mannosyltransferase II co-activator


Domain annotation for each model (and alignments):
>> Pga1  GPI-Mannosyltransferase II co-activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   4.7e-11   8.4e-07       3      99 ..      10     109 ..       8     217 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 4.7e-11
        Pga1   3 flvalvlANTEtfllkvPkdFplienrdeltrevaesnktlisLedsniakktyn....tkvkpkktllielndlksdetyqvkicWtAidPisikdld 97 
                 +l++++ AN E + ++ P  F  + + + + +++a  nk+    +d    +++ n    ++    ++  i +++l +++ y+ ++cW+A++P ++k + 
  CCE30086.1  10 TLAQIAAANVEKIIFNAPPPFGPSPPGSLALSTLALLNKIPTLTHDARSLRTELNrdvvSERYSGHSSWILVRNLTENQRYELRVCWSALEPTDFK-IT 107
                 688999****************97777777777777777777777766666666632222223357889**************************9.44 PP

        Pga1  98 hl 99 
                   
  CCE30086.1 108 AH 109
                 33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1902.16
//
Query:       CCE30087.1  [L=449]
Description: probable alpha-tubulin B [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-66  224.6   0.0    1.8e-66  224.1   0.0    1.2  1  Tubulin    Tubulin/FtsZ family, GTPase domain
    2.2e-49  166.8   0.1      4e-49  166.0   0.1    1.3  1  Tubulin_C  Tubulin C-terminal domain
     0.0041   16.8   0.0     0.0096   15.6   0.0    1.6  1  Tubulin_3  Tubulin domain


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.1   0.0   3.1e-70   1.8e-66       1     196 [.       3     213 ..       3     214 .. 0.99

  Alignments for each domain:
  == domain 1  score: 224.1 bits;  conditional E-value: 3.1e-70
                 EEEEEEEHHHHHHHHHHHHH...HHHCH................HHHT.....TTEEEEE....EEESBHHHHHTS-GS........EEEE--CCCCTT CS
     Tubulin   1 eiivigvGqcGnqignelwellakehgiqsdg............dslesfFsesgkveyiprsvaidtdpqvlneikags..elfnpnklllgkegagn 85 
                 e+i i+vGq+G+qi+n++wel++ ehgiq+dg            + +++fFse+g+++y+pr++ +d++p+v++++++g   +lf+p+ +++gke+a+n
  CCE30087.1   3 EVISINVGQAGCQIANSCWELYCLEHGIQPDGylteerkaqdpdQGFSTFFSETGQGKYVPRAIYCDLEPNVVDQVRTGDyrNLFHPEMMITGKEDASN 101
                 799*****************************************9****************************************************** PP

                 C--TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--.GG.G-HHHHHHHHHHHHHHHHT-SE CS
     Tubulin  86 ngaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs.efsevvvepynailalkelieesda 183
                 n+a+g+++vgke++e +l++ir+ +++c  lqgf++++s+gGGTGSG+g++++e+l+ +y k+ ++ ++v+P  ++ ++vvepyn+il++++  e+sd+
  CCE30087.1 102 NYARGHYTVGKELIEGVLDKIRRVADNCVGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPApQTATSVVEPYNSILTTHTTLEHSDC 200
                 **************************************************************************999********************** PP

                 EEEEEHHHHHCCS CS
     Tubulin 184 vividNdaLlkil 196
                  +++dN+a+++i+
  CCE30087.1 201 SFMVDNEAIYDIC 213
                 ************9 PP

>> Tubulin_C  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.0   0.1   6.6e-53     4e-49       1     124 [.     263     391 ..     263     392 .. 0.99

  Alignments for each domain:
  == domain 1  score: 166.0 bits;  conditional E-value: 6.6e-53
                 TTC-EEEEEEESSSCTTTTTCS-HHHHHHHHHTCSGGGBSSSTSTTTSSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTSTTTEEEEEEECECT CS
   Tubulin_C   1 PrlhFlltsyaPlvsaekaavektsvqdvtrallepknimvkvdprkgkylaiallirGdvepkevnkavqrikekkkaqfveWiptgikvalnkkspy 99 
                 Pr+hF+l++yaP++sa+kaa+e +svq++t +++ep+n+mvk+dpr+gky+a++ll+rGdv+p++ ++av+++k+k+++qfv+W+ptg+k ++++++p 
  CCE30087.1 263 PRIHFPLVAYAPVISAAKAAHEANSVQEITMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDTHAAVASLKTKRTIQFVDWCPTGFKLGICYQAPE 361
                 9************************************************************************************************** PP

                 -TTTS.....SCEEEEEEEEGGGHHHHHHH CS
   Tubulin_C 100 vkkqs.....kvsvlmlaNttsiaelfkrl 124
                  +++      +++v+ml+Ntt+iae++++l
  CCE30087.1 362 NVPNGdlakvNRAVCMLSNTTAIAEAWSSL 391
                 ****99**999****************987 PP

>> Tubulin_3  Tubulin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.6e-06    0.0096      41     108 ..     106     167 ..      73     209 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.6e-06
   Tubulin_3  41 edwsvGeeLfeeldkehdlldrdlrpfaeecdqlrglqvftgvddaWG.Gfaakylerlrdeygkksil 108
                  +++vG+eL e       +ld+ +r  a++c  l+g+ vf +     G Gf+a  +erl  +ygkks l
  CCE30087.1 106 GHYTVGKELIE------GVLDK-IRRVADNCVGLQGFLVFHSFGGGTGsGFGALLMERLSVDYGKKSKL 167
                 44667777765......35665.899****************99887769***************9954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3361.33
//
Query:       CCE30088.1  [L=374]
Description: related to hydroxymethylglutaryl-CoA lyase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-44  151.9   0.1    4.3e-42  144.5   0.1    2.0  1  HMGL-like  HMGL-like


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   0.1   2.4e-46   4.3e-42       1     262 [.      38     340 ..      38     342 .. 0.86

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 2.4e-46
                 B-EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--.......TSGGGT.THHHHHHHS---TT-B.....--EE-SSHHHHHHHHH....TT CS
   HMGL-like   1 kvkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEv.......gfpaaseddfevvraiakavkkar...ilalvrarekdikaavealkgag 89 
                 kv++v++ +RDG q++k+a+ ++ k+++++ L++ gv+ iE+       ++p++  ++ e ++ i +  +++     ++ + +++k +k a++ lk + 
  CCE30088.1  38 KVRLVEVGPRDGLQNEKKAIPLATKIELIERLARTGVATIEAgsfvsskWVPQMA-NSSEIMEHILQRSPQTPvpvTYSFLSPNIKGFKNAADVLKANP 135
                 6899***************************************************.999******9999999444444555555555555555444321 PP

                 -S...................EEEEEEES-HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-E......TTT-BTTTB.S--HHHHHHHHHHHHHHT-SE CS
   HMGL-like  90 ak...................rvhvfiatselhlkaklkkdreevakkaeeavkaarslgkd......velsledas.rtdleflaevveaaeeaGatr 162
                 a+                   ++ vf +++e + +++l++d++ ++ +++++++ a+ lg +      v+l+++ ++ + d++++ae+  ++ eaGa++
  CCE30088.1 136 ATfsteldtqkhsngerkpaiEIAVFASATESFSQKNLNCDIQTSLGQFKAVIQDAKALGLRvrayisVVLGCPFEGfDVDPHKVAEISAELLEAGADE 234
                 1111111111111111122227999*******************************************999999875499******************* PP

                 EEEEETTS---HHHHHHHHHHHHHHS-.GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--......SSBBB-BHHHHHHHHHHTT-B----HH CS
   HMGL-like 163 iniaDtvGvltPneaaelisalkervkdkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlG......eraGnaaleelvaalealgvdtgldlq 255
                 i++ Dt G+ t     +l++ +++   +  ++++H+H+++G+A+ nt + +e G++  d++v GlG      +++Gn+a+e++v+ +e+lg+dtg+dl 
  CCE30088.1 235 ISLGDTTGMGTAPRTSALLRCMSAAGIRTEDIAMHFHDTYGQALVNTAVSLEHGIRTFDSSVGGLGgcpyspGATGNVATENMVYFMETLGMDTGIDLD 333
                 ***********************9988899********************************************************************* PP

                 HHHHHHH CS
   HMGL-like 256 klrsiaa 262
                  + +i a
  CCE30088.1 334 AMSDIGA 340
                 *999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2913.59
//
Query:       CCE30089.1  [L=511]
Description: probable H+-exporting ATPase 57K chain, vacuolar [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-65  219.9   0.0    3.8e-65  219.5   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    1.4e-13   51.2   1.4    2.8e-13   50.2   1.4    1.6  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
  ------ inclusion threshold ------
       0.04   14.1   0.0      0.088   13.0   0.0    1.5  1  DUF5535        Family of unknown function (DUF5535)


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.5   0.0   6.4e-69   3.8e-65       1     213 []     144     374 ..     144     374 .. 0.98

  Alignments for each domain:
  == domain 1  score: 219.5 bits;  conditional E-value: 6.4e-69
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS................S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd................d.aiiyvgiGergnevaevleefpegtimkrtvlvantsne 81 
                  Gi+++D++ +i++Gq++ i++a+g+++++i++++++q+                   +  i++ ++G + ++++ + ++f+e++ + rt+l++n +n+
   CCE30089.1 144 GISAIDTMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVkqkgvtnkgvhdgheeNfSIVFGAMGVNLETARFFTRDFEENGSLGRTTLFLNLAND 241
                  89***********************************86557889**********98789************************************** PP

                  -HHHHHHHHHHHHHHHHHHHH.TTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSH CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  82 pvaareasiytgitlAEyfrd.qgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdp 178
                  p+++r++++++++t+AEy+++  +k+vl+i+++ls ++++lre+s++ +e+p+++gyp+y++++l+++yERag++  r+Gs+t++++++++++D+++p
   CCE30089.1 242 PTIERIITPRLALTTAEYYAYqLEKHVLVILTDLSSYCDSLREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVAGRNGSITQIPILTMPNDDITHP 339
                  ********************9679************************************************************************** PP

                  HHHHHHHHSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 179 vttatlgitdgfivLdkklaqrkhfPainvlvSvS 213
                  +++ t +it+g+i++d++l +r+++P+invl S+S
   CCE30089.1 340 IPDLTGYITEGQIFVDRALYNRGIYPPINVLPSLS 374
                  *********************************98 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   1.4   4.7e-17   2.8e-13       4      69 .]      24      87 ..      21      87 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 4.7e-17
                   EETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBT.TSEEEEES CS
  ATP-synt_ab_N  4 viGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsr.GteVkrTG 69
                   v+Gp+v+ e+++   p + ++++  l++ gt++ g++l+ ++d+++v+v+++t+G+++  t+V++TG
     CCE30089.1 24 VNGPLVILENVKF--PRYSEIVSLTLPD-GTVRSGQVLEARGDRAVVQVFEGTSGVDVkKTRVEFTG 87
                   99***********..888888888888*.*************************************9 PP

>> DUF5535  Family of unknown function (DUF5535)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.5e-05     0.088      42      80 ..     454     492 ..     445     505 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
     DUF5535  42 lgwllsrgvrreqvdrlptkvllelyikeakrsrgrasy 80 
                 l+w l r  +r+ ++r p+kvl e y +  k ++++ + 
  CCE30089.1 454 LAWSLLRIFPRDLLNRIPAKVLNEYYQRAQKDAKSKGKA 492
                 89************************9877754443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3678.53
//
Query:       CCE30090.1  [L=416]
Description: related to aldose 1-epimerase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-52  178.6   0.8    2.2e-52  178.2   0.8    1.2  1  Aldose_epim      Aldose 1-epimerase
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.19   11.7   0.0    1.3  1  Pept_tRNA_hydro  Peptidyl-tRNA hydrolase


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.2   0.8   2.5e-56   2.2e-52       9     284 ..      50     385 ..      46     410 .. 0.95

  Alignments for each domain:
  == domain 1  score: 178.2 bits;  conditional E-value: 2.5e-56
                  TEEEEEECTCTTEEEEEEETT.S..TEESB-B-STHHHHHHSC...CSSCEECSS-SEEETTEEEETTEEEECCCCBT.......TTCEETBSGGG.. CS
  Aldose_epim   9 aglsakislyGAtllslkvpdke..qrevllgsddaeeylkds...yfgatlgrvanRianGeFeldGkpyqlpqnee.......gknplHGgarg.. 92 
                  +  sa+++ yGA +  + v+d++  +r+v+ g+d+a+ y +d+   +fg + gr+anRi+n +Fe+dG++y++++ne+       g n+lHGg  g  
   CCE30090.1  50 HDISASFIAYGASVSNFMVKDQYgiERDVVTGFDNASYYGQDQqhpHFGGVPGRYANRIKNSTFEIDGVQYKITPNEHptegnpkGVNTLHGGPDGwd 147
                  6789*****************99************988888879****************************************************** PP

                  .SB-EEEEEEETTEEEEEEEEEEETCHCSTSEEEEEEEEEEETTEEEEEEEEEEESSS-EEEEEEEEEEEETSSC......TCTGGEEEEEE.EEEEE CS
  Aldose_epim  93 .reWeveevkeddgvtvslvlkpdgeegypgdlevrvtytLnednelkieyeatndgkptpfnltnHtYFnlsge......sidshelqiea.deyle 182
                   r+++v+ +++ +++t+s+v+ pdg+eg+pg++   +tytLn+++ ++i++ a+ ++k+tp+ l+ HtY+nl g       +i +h+l +      + 
   CCE30090.1 148 wRNFTVVAHTN-HSITFSFVD-PDGKEGFPGEVVSFITYTLNGRD-WDIKMVAEATTKKTPIMLSSHTYWNLDGFannetnKIFNHTLHMPYaGLRVG 242
                  **********6.*********.*********************99.***************************9999*************99667788 PP

                  ECTTSGEEEEEEECTTCCC.CC.CSSEEHCSSET.............EEEEEEEESSC........SEEEEEETTTTEEEEEEEETTSSEEEEEECTT CS
  Aldose_epim 183 vdeeliptgelkdvkgtpf.df.rqpkaigedlk.............glDhayllksk........lkaviidpdkksgiklevsttepalvvytgnf 257
                  vd+ liptgel + k+ +  df ++pk++g  l              g+D++y ++          ++av ++ ++ sgi+l+v+t++ a+++y+ ++
   CCE30090.1 243 VDNILIPTGELLPNKNGSVnDFwSKPKQLGASLGdeeltgncgfnctGYDNCYINNRDalspydwrKEAVTTLSSDWSGIQLDVYTDQDAFQMYSCGG 340
                  9999*********999999999999999999988999*******************99********9*****************************99 PP

                  TT..................SEECCEEESSECTCETCCCECHHHT CS
  Aldose_epim 258 lk..................kylsreglaletqmlpdepnhpefp 284
                  ++                  +  ++  + le q ++d +nhpe+ 
   CCE30090.1 341 QNgsvalkktqgvhdgkfprTIPQYGCVVLEVQDYIDGINHPEWM 385
                  999****99999999999988888899999999999999999996 PP

>> Pept_tRNA_hydro  Peptidyl-tRNA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.1e-05      0.19      13      94 ..     155     260 ..     152     264 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.1e-05
                      TTCGGGHHHHHHHHHHHH....................TCEEEEEETTEEEEEEEESS-GGGHHHHHHHHHHHCT--......GEEEEEEETTS CS
  Pept_tRNA_hydro  13 ektRHNvGflvvdelakk....................aevaegkiegekvlllkPqtymNlsGeavkellkfykiese....eilvvhDdldl 82 
                      ++t H++ f +vd   k+                     ++  + +++++ ++l ++ty Nl+G a +e  k+++ + +     + v +D++ +
       CCE30090.1 155 AHTNHSITFSFVDPDGKEgfpgevvsfitytlngrdwdIKMVAEATTKKTPIMLSSHTYWNLDGFANNETNKIFNHTLHmpyaGLRVGVDNILI 248
                      6899999999999555444554455555555555566633333466666668899***********99999977754323456999******** PP

                      STTEEEEEESS- CS
  Pept_tRNA_hydro  83 plgkirlkkkgs 94 
                      p+g++   k+gs
       CCE30090.1 249 PTGELLPNKNGS 260
                      ***998877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3158.11
//
Query:       CCE30091.1  [L=459]
Description: probable candidate tumor suppressor DPH2L1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.7e-118  394.1   0.0   6.7e-118  393.5   0.0    1.2  1  Diphthamide_syn  Putative diphthamide synthesis protein


Domain annotation for each model (and alignments):
>> Diphthamide_syn  Putative diphthamide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.5   0.0  3.7e-122  6.7e-118       1     299 [.     132     432 ..     132     437 .. 0.98

  Alignments for each domain:
  == domain 1  score: 393.5 bits;  conditional E-value: 3.7e-122
  Diphthamide_syn   1 fPegllpdsaeiadileef..gaevvilgDttYGaCcvdevaaehlgadllvHyGhsclspvd..rlpvlYvfveieldvehlvetlkknfkek 90 
                      +Pegll ++++i+dil++f  g+e++i+gD+tYGaCc+d+++a++lg+dllvHy+hscl+pvd  ++++lYvfv+i++d+ hl+++l++nf ++
       CCE30091.1 132 MPEGLLLFATTISDILTQFcpGIETLIMGDVTYGACCIDDYTARALGCDLLVHYAHSCLIPVDvtKIKTLYVFVDISIDTAHLLASLERNFASG 225
                      8***************99999****************************************9999**************************999 PP

  Diphthamide_syn  91 kkivlvstiqyahaleevkeeleeegyevvkvpqsekplspgevlgctspklkeeeeevdailyigdgrfhllslmlsnpklpvyrydpyskkl 184
                      k+i++v+tiq++ +++ v++ le++g++v+ vpq   pls+ge+lgctsp+lke ++ vd ily+gdgrfhl+s+m++np++p+yrydpys+kl
       CCE30091.1 226 KTIAVVGTIQFNATIHGVRSSLEAAGFNVL-VPQI-APLSKGEILGCTSPRLKE-DDAVDMILYLGDGRFHLESIMIHNPTIPAYRYDPYSRKL 316
                      99*********************99****9.****.****************86.699************************************ PP

  Diphthamide_syn 185 teesydakkllrrRyaaiekakdakkvGiivgtlgvqgrlelverlkkllkeagkksylvlvgelnpakLanfaeidafVlvaCprlsiddgke 278
                      t+e+y ++++ + R++ai++a++ak++G+i+g+lg+qg+++++  ++k+lke+g+  + +l++e++p kLa ++e++++V+vaCprlsid+g++
       CCE30091.1 317 TRETYGHDEMQSLRRNAIHTARTAKRWGLILGSLGRQGNPHTMALIEKRLKEKGIPWVNLLLSEIFPGKLALMNEVECWVQVACPRLSIDWGYA 410
                      ********************************************************************************************** PP

  Diphthamide_syn 279 FekPvltpyElevalg.erewt 299
                      F++P+ltpyE+ valg ++ew+
       CCE30091.1 411 FPRPLLTPYEALVALGvKEEWD 432
                      *****************99*98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3594.82
//
Query:       CCE30092.1  [L=148]
Description: uncharacterized protein CPUR_03940 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-41  139.5   0.0    1.9e-40  138.5   0.0    1.5  1  Ctf8      Ctf8
  ------ inclusion threshold ------
       0.18   12.2   0.0       0.23   11.9   0.0    1.2  1  DEC-1_C   Dec-1 protein, C terminal region


Domain annotation for each model (and alignments):
>> Ctf8  Ctf8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.0   2.1e-44   1.9e-40       1     142 []      23     142 ..      23     142 .. 0.93

  Alignments for each domain:
  == domain 1  score: 138.5 bits;  conditional E-value: 2.1e-44
        Ctf8   1 llqtpsglalLElQGtinlpekekeeaeeesvsdeakaqetveevkiGrldfpdyspeaedtkwmkrvyLyvgkhQrLtGevkkLakplavlrrrksek 99 
                 l+qtpsglalLElQG+ nlp+++++++ ++              v+iG++dfpdy p+ae t+wmk v+L vg++QrLtGevkkL+k++av+r+r+++ 
  CCE30092.1  23 LIQTPSGLALLELQGEFNLPHRSSDQSCNDG-------------VEIGQIDFPDYVPDAEGTAWMKCVHLHVGQNQRLTGEVKKLPKAIAVIRKRANRM 108
                 79*******************9988887765.............***************************************************8777 PP

        Ctf8 100 keeeeeeeekeeeksseeeseeeleivdivkykiifssrPePv 142
                  e+++          + +e++e+le+v+iv++ki+fssrPePv
  CCE30092.1 109 LENSAG---------TYMEEGEHLEVVEIVRHKILFSSRPEPV 142
                 775544.........4899***********************8 PP

>> DEC-1_C  Dec-1 protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.6e-05      0.23      26      78 ..      64     115 ..      43     131 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.6e-05
     DEC-1_C  26 qmpenegtarhkvdalglggnkrkksksksappavinyyyaapqrpvvqsygt 78 
                  +p+ egta  k   l +g n+r     k  p a+        +r + +s gt
  CCE30092.1  64 YVPDAEGTAWMKCVHLHVGQNQRLTGEVKKLPKAIAV-IRKRANRMLENSAGT 115
                 58**********************9999999887644.334445666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1085.20
//
Query:       CCE30093.1  [L=239]
Description: probable 40s ribosomal protein S6.e, cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-57  193.4   0.0    2.3e-57  192.4   0.0    1.5  1  Ribosomal_S6e  Ribosomal protein S6e
  ------ inclusion threshold ------
      0.081   12.0   6.2      0.098   11.7   6.2    1.1  1  Atg14          Vacuolar sorting 38 and autophagy-related subu


Domain annotation for each model (and alignments):
>> Ribosomal_S6e  Ribosomal protein S6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.4   0.0   2.5e-61   2.3e-57       1     125 []       1     126 [.       1     126 [. 1.00

  Alignments for each domain:
  == domain 1  score: 192.4 bits;  conditional E-value: 2.5e-61
                    -EEEEEETTTTEEEEEE-.CHHHCTTCTT-BSSEEEECCTTTSSSTS-EEEEEEEEETTC-BB-TTS-SSSEEEEEEETTSSSS-SSSSS-EEEEE CS
  Ribosomal_S6e   1 mklnisdpatgkqkliev.dekklrtligkrigeevdgdalGeelkgyvlkitggsdkqGfpmkqgvltpgrvrlLlskggvgyrprrkGerkrks 95 
                    mklnis+pa+g+qkli++ de+kl  +++kr+g ev+gd++G+e+kgy+++itgg+dkqGfpmkqgvl pgrvrlLl++g+++yrprr+Gerkrks
     CCE30093.1   1 MKLNISYPANGSQKLIDIeDERKLAVFMEKRMGAEVAGDSVGDEFKGYIFRITGGNDKQGFPMKQGVLSPGRVRLLLADGHSCYRPRRTGERKRKS 96 
                    9*********************************************************************************************** PP

                    EE-SB--SSEEEEEEEEEE--SS--TTTSS CS
  Ribosomal_S6e  96 vrGcivsadisqlnlvivkkgekdiegltd 125
                    vrGciv  d+s+l+l ivk+g+  i+gltd
     CCE30093.1  97 VRGCIVGMDLSVLALSIVKQGDAAIPGLTD 126
                    *****************************8 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   6.2   1.1e-05     0.098      58     134 ..     162     238 ..     139     239 .] 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.1e-05
       Atg14  58 ledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqia 134
                  + k + kk + +  k+++  + +rlq  ++++   ++++e+ k +  ++ + l+kR +++++++   ++rr++++ 
  CCE30093.1 162 VQPKGEGKKPYTKAPKIQRLVTPQRLQHKRHRIALKRRQTEKVKDEANEYAQVLAKRVAEAKAHKADARKRRASSMH 238
                 5677788888999999999******************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1104  (0.0615762); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1918.97
//
Query:       CCE30094.1  [L=4029]
Description: related to TOM1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.5e-129  432.2   0.0   1.5e-129  432.2   0.0    5.3  5  DUF913         Domain of Unknown Function (DUF913)
   7.8e-125  417.0   1.8   7.8e-125  417.0   1.8    3.3  3  DUF908         Domain of Unknown Function (DUF908)
    7.5e-93  311.4   0.0    1.4e-92  310.4   0.0    1.5  1  HECT           HECT-domain (ubiquitin-transferase)
    1.6e-24   84.5  18.3    1.2e-08   34.1   0.4    4.1  3  UBM            Ubiquitin binding region
  ------ inclusion threshold ------
         10    3.1  10.2         25    1.8  10.2    1.6  1  GREB1          Gene regulated by oestrogen in breast cancer


Domain annotation for each model (and alignments):
>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.2   0.0  4.2e-133  1.5e-129       1     366 [.     567    1009 ..     567    1011 .. 0.91
   2 ?    1.0   0.1     0.048   1.7e+02     275     349 ..    2052    2130 ..    1989    2136 .. 0.63
   3 ?   -2.0   0.4      0.37   1.3e+03     243     300 ..    2316    2393 ..    2281    2505 .. 0.53
   4 ?   -3.4   9.9         1   3.6e+03     264     301 ..    2826    2873 ..    2794    2923 .. 0.42
   5 ?    0.4   0.9      0.07   2.5e+02     288     319 ..    3342    3390 ..    3282    3434 .. 0.46

  Alignments for each domain:
  == domain 1  score: 432.2 bits;  conditional E-value: 4.2e-133
      DUF913    1 sravrvlDtlitniqnafqafanakgldalidrledevdealeevkegkgtpaelrssvvdyeipfqrqqlLKslLkfikhlmqss...gsgtdrll 94  
                  s+++++lD+li+++qnaf++f+na+glda++ +l+d+v+ea+ + ++++g++a+++s +vdyeip+++qq+LK+lLkf++h+m+++   g++tdrll
  CCE30094.1  567 SMVLAFLDGLIWTYQNAFTSFFNANGLDAVATLLVDTVAEAQGSQQSSHGVHADQQSAAVDYEIPYYQQQTLKWLLKFVHHIMSNAysyGGNTDRLL 663 
                  689*********************************************************************************99*********** PP

      DUF913   95 rnlidssqLlksLrkIienakvfGssvwslAvnilsdfihnePtslavlqeaglteslLeal................................... 156 
                  rnl+++s+Ll+sLr+Ii+n++ fGs+vw+++v+ilsdfi+n+Pts+a+++e+g+++++Lea+                                   
  CCE30094.1  664 RNLAEKSDLLQSLREIIANKRSFGSVVWTNSVTILSDFINNDPTSFAAISESGMIKTYLEAItgrtlpeqrageeakqteehqegdndgessissat 760 
                  ************************************************************************************************* PP

      DUF913  157 .........................lakgilpsrEvlasiPnvlsalcLNnaGlelfksskaleslfeifespehvkamesdgdlasnlGssfdELv 228 
                                            a+gil+s+E+++++P+vl+++cLNn+G++++++ska++s++eifesp hv++me ++d+asn+G +fdEL+
  CCE30094.1  761 vsvvadddqphppsdedirrtrqnePAQGILASSEAMNIVPQVLNSICLNNTGMKMVVASKAFDSFLEIFESPVHVNCMEMNRDIASNVGANFDELA 857 
                  ************************************************************************************************* PP

      DUF913  229 RhhpsLktaiikavikmlarvvelgkeka......akllved......assasskseasssssssetkeeekssededvemeda...eeetesesde 310 
                  Rhhp+L+tai++avi+m+arv+ lg ek       a+l+v +      + + +   ++ +++++++ k +   ++  d++m+d    ++et++e+++
  CCE30094.1  858 RHHPPLRTAISDAVIDMVARVRWLGIEKGinsdwgARLYVVThegvisTIHPNGYVAEGTTEVATGYKDK--GTDTVDIDMSDGigeAAETAKETAK 952 
                  *****************************99999988888886666653333333333333333333333..3444456666666664555555555 PP

      DUF913  311 seeseee.keknslldyilnvakFLeallsnnslcreFvekgGiellldlltlpslP 366 
                  +e+  ++  +++sl++yi+ +a+FL+++lsn+ l+++Fv++gGiellldl+++psl 
  CCE30094.1  953 EEKIAQKvVPSQSLTPYIHSLANFLTGYLSNTFLKTNFVKRGGIELLLDLCESPSLD 1009
                  5555555599999******************************************96 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.048
      DUF913  275 sssssssetkeeek..ssededvemeda.....eeetesesdeseeseeekeknslldyilnvakFLeall.snnslcreFve 349 
                  +ss++ +++++e++   + d++    da     +++++++++++ ++  ++e++++  y   + ++L+ ll s ++++ eF++
  CCE30094.1 2052 ESSTTVTSADTESSatVPMDAE----DAitkgpSTANNAKDKKQPKPVFKAEEHPIFVYRCFLLNCLTELLmSYTRTKVEFIN 2130
                  1111111111111111222222....2244443333333333344444458888899**********9999777779999985 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.37
      DUF913  243 ikmlarvvelgkeka.akllved...assasskseasssssssetkeeek...................ssededvemeda 300 
                  +++l+ +    ke +  ++l+ d   ++s ++++++ss s  ++++ ee+                   +   +d+ +ed 
  CCE30094.1 2316 LRVLRVLTGTVKELShSSILPADptgDNSDDEFASSSSVSDVDDDNREETpdlyrnsalgmlepraeddE---SDEGDEDD 2393
                  3333333333333333233444455422222222222222222222222245555566666666543320...12111111 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 1
      DUF913  264 d...........assasskseasssssssetkeeek.............ssededvemeda...e 301 
                  +           +    +k+e+             +             s+e+++ e++++   +
  CCE30094.1 2826 ElevqkqaeeerK----KKEEE-------------ErrtreekaaqetaSKEKREAEQREEndrA 2873
                  0222212111110....11111.............011111111122221111111111111110 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.07
      DUF913  288 k...............ssededvemeda....eeetesesdeseeseeeke 319 
                  +               +++d    +e+a    e++++ es++++++ ++k+
  CCE30094.1 3342 EgeaeapnaaeqasdnAPPD--ATTEEAqepaENPADGESTKEKKEASSKK 3390
                  11111222222222221111..11112222222222222222222222222 PP

>> DUF908  Domain of Unknown Function (DUF908)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.0   1.8  2.2e-128  7.8e-125       2     358 .]     120     501 ..     119     501 .. 0.95
   2 ?   -1.4   5.2      0.34   1.2e+03     169     244 ..    2854    3000 ..    2771    3021 .. 0.52
   3 ?   -2.9   1.3      0.95   3.4e+03     172     212 ..    3356    3390 ..    3320    3501 .. 0.53

  Alignments for each domain:
  == domain 1  score: 417.0 bits;  conditional E-value: 2.2e-128
      DUF908   2 dkelvlaiLrftrlLLenCgNrsiYnSsehLndLLnttdldvllatLrlllrlaqrysasnkrtksasrtvqqallanhynisldrllklAqpfpktpv 100
                 d  l+ a+Lrf+r+LLe+CgNrsiY+Ss+hLndLLn+t+ ++l++tL+ +++laqry+as+kr+ ++sr++++allanhyni+ldr+l+lA+pf+ktp+
  CCE30094.1 120 DIVLIQAVLRFSRMLLEHCGNRSIYASSAHLNDLLNSTSSSILIHTLEAGSELAQRYQASVKRIATPSRQISSALLANHYNIDLDRVLQLAMPFVKTPI 218
                 5679*********************************************************************************************** PP

      DUF908 101 sdssakaasek...............kastteyaldlvslakedskvlpsewgdvkvtYYkkssseeqkaesksskeeaseslissspstPtplrrssk 184
                  + +++ +s++               ++ tt++a+dlv++a+ d++  +++wgd+kv YY++++s+ ++a+++  ++        s+pstPtplrrs++
  CCE30094.1 219 VNLADSMPSTTpvstkgkekvygnsgRNLTTTHANDLVAIATCDNTR-WQSWGDIKVLYYSQDDSDRNDAPNEPGRS--------SEPSTPTPLRRSHT 308
                 **999999999***************9***************99998.********************999987554........59************ PP

      DUF908 185 lgkts.........sspsspaktstpskaaksqe.glktfeipesevsskslyellakavekiPkesryellhririakalnssseeRqqllaiRllAi 273
                  g+++          + ssp  ++tp+ a+++++ g+++fe+p+s + s+s+y+l++++++++P++++ye++hr+r+akal++s e Rqq+la RllAi
  CCE30094.1 309 IGSQQntprvrianPDDSSPILARTPAIADEQTTpGQRLFELPKSVIGSTSIYDLIRRIPDDMPQSAKYEVFHRLRVAKALADSIEARQQMLATRLLAI 407
                 **955678888988556667778899877766551666************************************************************* PP

      DUF908 274 tnlayihpesefqtkllkqdpd......lvyqLaeLihpe...esevprelqtaaleaLealarkkaklsdvlsaLnanvnhGiLlyvlRkava 358
                 tnlayih++s f +k+l++d d      lvyqLaeLihp    + ++p+ lqt+al++Lea+a ++ k++dvlsaLnanvnhGiLlyv+Rkava
  CCE30094.1 408 TNLAYIHSDSSFVEKVLRHDVDetrryqLVYQLAELIHPAadpNASIPLRLQTFALALLEAIAGFTPKCQDVLSALNANVNHGILLYVIRKAVA 501
                 *****************************************988************************************************97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.34
      DUF908  169 i........................ssspstPtplrrssklgkts............sspsspaktstpskaaksqeglktfeipesev........ 221 
                  +                          + st++   ++ + +  +            + + +pa++ ++++aa++     +  i  +ev        
  CCE30094.1 2854 QetaskekreaeqreendraqreqlAAAESTDAAEHHERTDQ--EpmegvvetsastDMSDAPAPQVSEASAADQPRV--MTTIRGEEVdvtelgid 2946
                  111111111222222223333343433333333222222222..1333444433433333333333333333333333..33344444444666666 PP

      DUF908  222 ...............................sskslyellakavekiPkesrye 244 
                                                  + +  +++++ ++ +P+e r e
  CCE30094.1 2947 peylaalpeefreeviaqtvserrsqareeaTAGESTDVFQEFLDALPEELRLE 3000
                  666666666666666666666665555554322445556666666666666555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.95
      DUF908  172 spstPtplrrssklgkts....sspsspaktstpskaaksqeglk 212 
                  +++ P  + ++++  +++    +          ++k++k++++ k
  CCE30094.1 3356 DNAPPDATTEEAQEPAENpadgE----------STKEKKEASSKK 3390
                  11111111111111111011110..........111111111111 PP

>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.4   0.0     4e-96   1.4e-92       2     306 ..    3724    4028 ..    3723    4029 .] 0.94

  Alignments for each domain:
  == domain 1  score: 310.4 bits;  conditional E-value: 4e-96
                  HHHHHHT-GGGSSEEESSTTSSSEEE-TTHHHHS.....HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT-.---TCHHHHH-HHHHHHHHHHH.. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT    2 llskelldpklglfeeesedsgtlypkpssseee.llklfeflGkvlGkaiyeeilldlpfsraflkfllgeekitledleeidpelakslkellsl 97  
                  +ls++++dp++ lf+  s+d+ t++p++ s  +  +l  f+f+G+++Gka+ye++lld  fsra++k +lg + ++++d+e++dp+++ksl ++l  
  CCE30094.1 3724 VLSRQMFDPNYVLFTPVSSDRTTFHPTKLSGVNPeHLLFFKFIGRIIGKALYEGRLLDCFFSRAVYKRILG-KSVSVKDMESFDPDYYKSLCWML-- 3817
                  699***********9999999999999887665585568********************************.6**********************.. PP

                  HS-GGG....GT-BSEEEEE.TTEEEEEESSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS CS
                  xxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   98 esnteeved.laLtFtipen.agasatieLipnGanipVtnenkkeYiklyvnyllkksvekqleaflkGfsevipskalklfdaeelellisGede 192 
                  e++    +d +  tF+++ + +g ++ ++LipnG+++ Vt+enk+eY++l+v+++l  sv+ q+e+flkGf+e+ip++++++f+++elellisG  +
  CCE30094.1 3818 ENEI---ADiITETFSVEDDeFGVTNIVDLIPNGREVAVTDENKHEYVRLVVEHRLLSSVKDQMESFLKGFHEIIPAELISIFSEQELELLISGLPD 3911
                  4454...440556*****99****************************************************************************7 PP

                  .--HHHHHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-.....B--EEEEE-S..-TTS--EEEGGGTEEEE--- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  193 lidvedlrrnteykggynaesetiewlweilkefspeekrlfLqFvTgssrlPlgGfael.....hpkftierkskedetrLPtahTCfnlLklpdY 284 
                   idv+d++++tey++ y+ +s++i+w+w+++++f++ee++++LqFvTg+s++Pl+Gf+el      ++f i+r    d++rLP++hTCfn+L++p+Y
  CCE30094.1 3912 -IDVDDWKSHTEYQN-YTPSSQQIQWFWRAVRSFDKEERAKLLQFVTGTSKVPLNGFKELegmngVSRFNIHRDY-GDKDRLPSSHTCFNQLDIPEY 4005
                  .************87.********************************************9999999******66.9******************** PP

                  SSHHHHHHHHHHHHHHH.H--XX CS
                  xxxxxxxxxxxxxxxxx.xxxxx RF
        HECT  285 sskeilkekLltAieet.egFel 306 
                  +s++ l+ +L  Ai+++ e F++
  CCE30094.1 4006 ESYDALRAQLYKAITQGsEYFGF 4028
                  ****************9777876 PP

>> UBM  Ubiquitin binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.4   3.4e-12   1.2e-08       3      34 ..    2939    2970 ..    2937    2971 .. 0.91
   2 !   26.9   4.0     6e-10   2.2e-06       2      35 .]    2978    3011 ..    2977    3011 .. 0.91
   3 !   31.6   1.1   2.1e-11   7.6e-08       3      34 ..    3028    3059 ..    3026    3060 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 3.4e-12
         UBM    3 apppegiDpsFLaaLPpdLReEVLaqqdeeql 34  
                  ++++ giDp++LaaLP++ ReEV+aq   e++
  CCE30094.1 2939 DVTELGIDPEYLAALPEEFREEVIAQTVSERR 2970
                  78899*********************999987 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 6e-10
         UBM    2 aapppegiDpsFLaaLPpdLReEVLaqqdeeqlr 35  
                  +a++ ++++ +FL+aLP++LR E+ +q+++e +r
  CCE30094.1 2978 TAGESTDVFQEFLDALPEELRLEIAQQERQEERR 3011
                  5678888************************987 PP

  == domain 3  score: 31.6 bits;  conditional E-value: 2.1e-11
         UBM    3 apppegiDp.sFLaaLPpdLReEVLaqqdeeql 34  
                  ++ +e +D+ s+L ++Pp+LRe+VL++q e+ +
  CCE30094.1 3028 PVVAE-MDAaSILLTFPPALREQVLMDQGEDIM 3059
                  55677.************************987 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  10.2    0.0069        25    1143    1265 ..    2802    2930 ..    2737    2935 .. 0.53

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.0069
       GREB1 1143 s..........pvkvekseskdavesglsskasakselseasaaaasaseeakspkasvtseeeeseeskekekeslsketesqlsleaseqkeald 1229
                  +          p+  e++++ +a+e  ++ +a+++ + +e ++   + +e+a +++as   +e+  +e+ e++ + ++++  +  s++a+e++e +d
  CCE30094.1 2802 KlgniiaarltPDVLERERKIKAQELEVQKQAEEERKKKE-EEERRTREEKAAQETAS---KEKREAEQREENDRAQREQLAAAESTDAAEHHERTD 2894
                  0344444444466666666666666666666666665444.33333333333333322...222222222222222222333333445555666666 PP

       GREB1 1230 akasskssssssssssassPssscslakavkrPpiv 1265
                  ++      ++s+s+  + +P++++s a a+ +P+++
  CCE30094.1 2895 QEPMEGVVETSASTDMSDAPAPQVSEASAADQPRVM 2930
                  6666666777777778888**************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4029 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2014  (0.112332); expected 358.6 (0.02)
Passed bias filter:                      855  (0.0476881); expected 358.6 (0.02)
Passed Vit filter:                       219  (0.0122148); expected 17.9 (0.001)
Passed Fwd filter:                        84  (0.00468515); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 3.15u 0.39s 00:00:03.54 Elapsed: 00:00:00.66
# Mc/sec: 18425.00
//
Query:       CCE30095.1  [L=924]
Description: related to GTPase-activating protein (GAP) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-48  165.4   0.4    6.5e-47  159.9   0.4    2.5  1  RabGAP-TBC     Rab-GTPase-TBC domain
     0.0002   21.2  22.2      0.001   18.9  21.8    2.5  1  KASH_CCD       Coiled-coil region of CCDC155 or KASH
    0.00024   21.4  16.6    0.00024   21.4  16.6    3.5  4  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
     0.0014   18.7   4.8     0.0014   18.7   4.8    4.3  4  Cnn_1N         Centrosomin N-terminal motif 1
  ------ inclusion threshold ------
      0.037   14.0   1.2      0.091   12.8   0.1    2.3  2  Pyridox_ox_2   Pyridoxamine 5'-phosphate oxidase
      0.057   13.5  23.0      0.066   13.3   9.1    3.1  2  UPF0242        Uncharacterised protein family (UPF0242) N-ter
       0.18   11.8   3.9       0.49   10.4   3.9    1.8  1  Trypan_PARP    Procyclic acidic repetitive protein (PARP)
        1.3    9.3  23.1       0.18   12.1   0.4    4.8  5  HALZ           Homeobox associated leucine zipper
        4.8    7.7  37.1        1.2    9.7  12.1    3.7  3  APG6_N         Apg6 coiled-coil region
        4.8    7.7  11.8        3.4    8.1   0.7    3.9  3  FlaC_arch      Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   0.4   3.7e-50   6.5e-47      30     214 ..     517     700 ..     421     701 .. 0.86

  Alignments for each domain:
  == domain 1  score: 159.9 bits;  conditional E-value: 3.7e-50
  RabGAP-TBC  30 ksekeksklekseeskelsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevgYcqGmndivaplllvsldeeeaFwcfvsLlekyklrdlyt 128
                 +++k+++k+  ++ +k ++ I++D+    + s++   + +q+ L+ + kay++ +  vgY qGmn++  pll ++++e eaF+++v+L+++yklrdl++
  CCE30095.1 517 AEKKKRQKEDAAAVQKLEKLIRRDLGARTSFSKYAAAAGLQDGLFGVCKAYALFDDGVGYAQGMNFLIMPLL-FNMPEDEAFCLLVRLMHQYKLRDLFI 614
                 44556666666666777********8777768999999**********************************.999*********************** PP

  RabGAP-TBC 129 sslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwD.lllegekfvllrvalailklleeel 214
                 +++pgl+  l+++e+ll++  p+ly hl++ g+ + l+a++wfltlf++ fpl++vlr++D +l eg +  +lr+++a+++++ + l
  CCE30095.1 615 QDMPGLHLHLYQFERLLEDLEPALYCHLHRRGISSHLYATQWFLTLFAYRFPLQLVLRIYDlILSEGLSA-ILRFGIALMQKNAATL 700
                 *************************************************************555599988.*********8887655 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9  21.8   5.8e-07     0.001      10     139 ..     789     923 ..     780     924 .] 0.86

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.8e-07
    KASH_CCD  10 vadLqlnNkkLaeenskLkkavetaeetnakLteeieeLkkklkstQqalqkaklleeEleelkalvke....leE....krarlkaqnkqlekenqsL 100
                 + dL+++N++La + +kL   v++ + + a L+ e+ + k        +  + ++l+  + el++++++    +eE    +r  l  +n ++  enq  
  CCE30095.1 789 LHDLRQSNQSLAIQLRKLEVRVQAGDTEQAALATELVHTKVEN---EELRDENESLKGQVKELRVVIEKqpveIEEawkmERDDLMKRNANVHEENQRV 884
                 78*******************************9998766554...4556778899999999999887522225664444578999************* PP

    KASH_CCD 101 iakiesLqeenikllaekdelkkklkeLlkekaeLkkql 139
                 ++++++L+e++ + ++   e  ++ +eL ++ a+Lk+q 
  CCE30095.1 885 EKELADLEEQLVQTKMRYAEIDSQHEELKRKWADLKRQF 923
                 *************************************96 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.99   1.8e+03      92     136 ..     273     317 ..     268     327 .. 0.76
   2 ?   -3.0   0.3       4.2   7.5e+03      69      77 ..     518     526 ..     493     540 .. 0.45
   3 ?   -0.4   4.1      0.68   1.2e+03      55      96 ..     764     805 ..     751     823 .. 0.57
   4 !   21.4  16.6   1.3e-07   0.00024      41     149 ..     820     918 ..     816     923 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.99
  Jnk-SapK_ap_N  92 kelqekveqleeenrelelkaknaadqlsrleekeaelkkeyskl 136
                    ++  + ++ l+++ +++  k+++  d ++r + ++ ++ k+  k+
     CCE30095.1 273 RNTASSIATLTSNPEMMLSKLDEEYDGVNRASGSQRDSLKDRFKA 317
                    566778888888888888899999999999999988887766554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.2
  Jnk-SapK_ap_N  69 ekelrkrae 77 
                    ek++r++++
     CCE30095.1 518 EKKKRQKED 526
                    222222111 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.68
  Jnk-SapK_ap_N  55 lreeleqLeteyerekelrkraeeeleeiedqweeerkelqe 96 
                      e+l+ ++te e+++++ k+ e el+ + ++ ++ + +l++
     CCE30095.1 764 TPETLKAFTTEWEEKRKADKDRETELHDLRQSNQSLAIQLRK 805
                    445566666666666666666666666555544443333333 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 1.3e-07
  Jnk-SapK_ap_N  41 lasrneeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeyskl 136
                    la++  + ++e eelr+e+e+L+    + kelr   e++  eie++w+ er +l ++ ++++een+++e       ++l++lee+  + k +y++ 
     CCE30095.1 820 LATELVHTKVENEELRDENESLKG---QVKELRVVIEKQPVEIEEAWKMERDDLMKRNANVHEENQRVE-------KELADLEEQLVQTKMRYAEI 905
                    677777899*************99...67899*************************************.......66777777777777777777 PP

  Jnk-SapK_ap_N 137 heretellkklke 149
                     ++++el +k ++
     CCE30095.1 906 DSQHEELKRKWAD 918
                    7777777666655 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.9      0.76   1.4e+03      34      68 ..     501     535 ..     487     539 .. 0.74
   2 ?   -3.4   0.0       6.2   1.1e+04      54      69 ..     743     758 ..     740     760 .. 0.86
   3 !   18.7   4.8   7.8e-07    0.0014       3      69 ..     783     848 ..     783     852 .. 0.94
   4 !    7.6   4.3    0.0023       4.2      36      70 ..     865     899 ..     852     902 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.76
      Cnn_1N  34 seeqkeellkenielkveveslqkelkekkkllre 68 
                 s++++e++ k  i +  e ++ qke  +  ++l++
  CCE30095.1 501 SDKSQEAIAKAQIAVAAEKKKRQKEDAAAVQKLEK 535
                 33789999999999999999999997766666665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.2
      Cnn_1N  54 slqkelkekkkllrea 69 
                 s+ ke+ + ++l+r+a
  CCE30095.1 743 SMDKEVYRADQLVRDA 758
                 7999999999999997 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 7.8e-07
      Cnn_1N   3 rEqeeqidkLkKENFdLKLriyfLeerleklseeqkeellkenielkveveslqkelkekkkllrea 69 
                 ++ e+++ +L+  N +L +++  Le r++++++ ++ +l  e++  kve+e+l++e++++k +++e+
  CCE30095.1 783 KDRETELHDLRQSNQSLAIQLRKLEVRVQAGDT-EQAALATELVHTKVENEELRDENESLKGQVKEL 848
                 67899****************************.78899999********************99986 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0023
      Cnn_1N  36 eqkeellkenielkveveslqkelkekkkllreae 70 
                  ++++l+k n ++++e++  +kel  ++++l + +
  CCE30095.1 865 MERDDLMKRNANVHEENQRVEKELADLEEQLVQTK 899
                 5789**************************98865 PP

>> Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   5.1e-05     0.091      74     125 ..     385     440 ..     371     449 .. 0.83
   2 ?   -2.2   0.1       2.1   3.8e+03      99     140 ..     766     809 ..     764     810 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.1e-05
                   GG.EEE.EEEEEEEEEEEEE.--HHHHHHHCCCHHHHHSTTT.GGCSB---CCCCC CS
  Pyridox_ox_2  74 fn.sln.yrSVvvrGraeev.tdeeekaealellvekivpgr.wenlrpptrkelk 125
                    + +++ ++SVv  G+a++  t++ee  +a  + + +++ g  w+ l + +++ l+
    CCE30095.1 385 SHvDWDiWQSVVYEGPAAVArTSPEELNRAIATGIPNAIRGViWQVLAQSKNEHLE 440
                   4999************887779***************9999999977666666655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.1
                   HHCCCHHHHHSTTT.GGCSB---CCCCCT.EEEEEEEEEEEEEE CS
  Pyridox_ox_2  99 ealellvekivpgr.wenlrpptrkelka.tsvlrlkieevsgr 140
                   e l++++  + ++r  ++ r+ +  +l++ ++ l+++++++ +r
    CCE30095.1 766 ETLKAFTTEWEEKRkADKDRETELHDLRQsNQSLAIQLRKLEVR 809
                   67899999998888666777666666665677888887777666 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   9.1   3.7e-05     0.066       7     173 ..     658     860 ..     654     861 .. 0.70
   2 ?   -0.6  15.5      0.68   1.2e+03      82     168 ..     832     915 ..     805     922 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-05
     UPF0242   7 siiflYllPll.llaiysiqllseqksWsllsiGl..llaaaGsLlllllllkwekalkekl...........................ekskleekea 75 
                 + +f Y  Pl  +l iy + +ls +    +l +G+  +   a++Ll++  + ++ + lk kl                           +         
  CCE30095.1 658 LTLFAYRFPLQlVLRIYDL-ILS-EGLSAILRFGIalMQKNAATLLAIQDMQQLTTYLKDKLfdvyidkdpsqgsilengffgsssssmD--------- 745
                 5689999999768888875.566.44445665555438899********************98988888888888885555543222221......... PP

     UPF0242  76 klteld..........eglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiae.......dfeelkleleeqLaekqellqe...y 154
                    ++            ++k+  e+l+  + e ee ++  + +e+el+ l++ nq+L ++l +          + ++l  el  +  e +el +e   +
  CCE30095.1 746 ---KEVyradqlvrdaCEIKITPETLKAFTTEWEEKRKADKDRETELHDLRQSNQSLAIQLRKLEVrvqagdtEQAALATELVHTKVENEELRDEnesL 841
                 ...222444456666678999999*******************************99999988655676775533344444333333333333321115 PP

     UPF0242 155 qetieeqrsvlekrqdqie 173
                 + +++e+r v+ek+  +ie
  CCE30095.1 842 KGQVKELRVVIEKQPVEIE 860
                 6678888888888766665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.68
     UPF0242  82 eglktkeealeelqeeeeeLkeeldakeeelerl.keenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqrsvlekr 168
                 e+l+ ++   e l+ + +eL+  ++++  e+e+  k e   L ++  ++ e+++++ +el   L+e+  + +   ++i +q+++l+++
  CCE30095.1 832 EELRDEN---ESLKGQVKELRVVIEKQPVEIEEAwKMERDDLMKRNANVHEENQRVEKELA-DLEEQLVQTKMRYAEIDSQHEELKRK 915
                 1222222...222223333333366666666553145566777777777778888877774.47777777777778888888888877 PP

>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.9   0.00027      0.49      47      92 ..      61     102 ..      32     127 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
  Trypan_PARP  47 tkvsdddtngtdpepepepepepepepepepepetepeeepepepe 92 
                  tk s+   ++  p+p+p  ep+p p+pe +p      +e+++++ +
   CCE30095.1  61 TKRSASFNKSPSPQPKPRGEPQPVPQPEHQPHR----DEKGNDKVQ 102
                  555554444445555555555555555555554....333333222 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.5   2.7e+03       8      19 ..     309     320 ..     308     323 .. 0.72
   2 ?    4.0   0.6     0.033        59      23      39 ..     791     807 ..     787     811 .. 0.85
   3 ?   12.1   0.4   9.9e-05      0.18      18      39 ..     828     849 ..     828     852 .. 0.92
   4 ?    5.6   2.3      0.01        19      15      42 ..     868     895 ..     864     896 .. 0.91
   5 ?   -0.8   0.1         1   1.8e+03      14      32 ..     902     920 ..     899     923 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
        HALZ   8 dvLKasYdaLks 19 
                 d+LK ++ aL++
  CCE30095.1 309 DSLKDRFKALRM 320
                 568888888875 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.033
        HALZ  23 sLkkenekLkaelqeLk 39 
                  L++ n++L ++l++L 
  CCE30095.1 791 DLRQSNQSLAIQLRKLE 807
                 6999***********97 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 9.9e-05
        HALZ  18 ksdydsLkkenekLkaelqeLk 39 
                 k +++ L++ene+Lk +++eL+
  CCE30095.1 828 KVENEELRDENESLKGQVKELR 849
                 5689*****************7 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.01
        HALZ  15 daLksdydsLkkenekLkaelqeLkekl 42 
                 d L  ++ ++++en++ ++el+ L e+l
  CCE30095.1 868 DDLMKRNANVHEENQRVEKELADLEEQL 895
                 77888999*****************987 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1
        HALZ  14 YdaLksdydsLkkenekLk 32 
                 Y    s+++ Lk+    Lk
  CCE30095.1 902 YAEIDSQHEELKRKWADLK 920
                 5555566666665544444 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.3      0.23   4.1e+02      47      73 ..     510     536 ..     480     550 .. 0.63
   2 ?    9.7  12.1   0.00065       1.2      47     127 ..     766     846 ..     740     850 .. 0.87
   3 ?    5.2  11.0     0.016        29      67     125 ..     864     922 ..     852     924 .] 0.47

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.23
      APG6_N  47 eeleeleeeleklekeeeelleeLkel 73 
                 +   +   e +k +ke ++++++L++l
  CCE30095.1 510 KAQIAVAAEKKKRQKEDAAAVQKLEKL 536
                 222233334555555555555555554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00065
      APG6_N  47 eeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqye 127
                 e l++   e e+ +k+ ++ ++eL +l + +++l+ +l++le   +a + e+++  +e    ++e +el +e +sl+ q++
  CCE30095.1 766 ETLKAFTTEWEEKRKADKDRETELHDLRQSNQSLAIQLRKLEVRVQAGDTEQAALATELVHTKVENEELRDENESLKGQVK 846
                 577888889999999999999******************************************************999876 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.016
      APG6_N  67 leeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaq 125
                   e ++l k ++++ +e +  e+el++lee+  +  ++y e + +++el+ + + l+ q
  CCE30095.1 864 KMERDDLMKRNANVHEENQRVEKELADLEEQLVQTKMRYAEIDSQHEELKRKWADLKRQ 922
                 33444444444444444444444444444444444444444444444444444444444 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2      0.23   4.1e+02      13      38 ..     786     811 ..     783     812 .. 0.90
   2 ?    8.1   0.7    0.0019       3.4      12      40 ..     820     848 ..     814     851 .. 0.89
   3 ?    2.9   0.7     0.082   1.5e+02       4      27 ..     890     913 ..     865     923 .. 0.55

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.23
   FlaC_arch  13 steletvkkeneelsksveelkenVk 38 
                 +tel  ++++n++l  ++ +l+ +V+
  CCE30095.1 786 ETELHDLRQSNQSLAIQLRKLEVRVQ 811
                 899******************99886 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0019
   FlaC_arch  12 lsteletvkkeneelsksveelkenVkdl 40 
                 l tel   k eneel+++ e lk +Vk+l
  CCE30095.1 820 LATELVHTKVENEELRDENESLKGQVKEL 848
                 6789999999****************987 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.082
   FlaC_arch   4 elEnklsklsteletvkkeneels 27 
                 +lE++l +++++ + + ++ eel+
  CCE30095.1 890 DLEEQLVQTKMRYAEIDSQHEELK 913
                 334444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (924 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2027  (0.113057); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 5772.30
//
Query:       CCE30096.1  [L=206]
Description: probable ribosomal protein Rps8bp [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-54  182.9   1.4    3.4e-54  182.7   1.4    1.1  1  Ribosomal_S8e  Ribosomal protein S8e


Domain annotation for each model (and alignments):
>> Ribosomal_S8e  Ribosomal protein S8e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.7   1.4   1.9e-58   3.4e-54       1     137 []       1     192 [.       1     192 [. 1.00

  Alignments for each domain:
  == domain 1  score: 182.7 bits;  conditional E-value: 1.9e-58
                    XXXBXXCCCSEESSTEEXXXSSXXXCCSBXXXXXXXEESSHEEEEEEETTCEEEEEEESESEEEEEETTTTEEEEEEEEEEECSSSTCHHHHTTC- CS
  Ribosomal_S8e   1 mgisrdskhkrkltGgkakllrkkrkielgrkekatklgaervkvvrvrgGkrkkralrlkkanvthpeekvtkklkIlgVkknpsnneyvrlgvl 96 
                    mgisrds+hkr+++G+k++ +rkkr++e gr+ ++t++ga+rv++vr+rgG++k+ralrl+++n+++++e++t+k++++ V ++psnne+vr+++l
     CCE30096.1   1 MGISRDSRHKRSASGAKRAYYRKKRAFEAGRQGANTRIGAKRVHTVRTRGGNHKYRALRLDSGNFAWASEGCTRKTRVIAVAYHPSNNELVRTNTL 96 
                    99********************************************************************************************** PP

                    -TTEEEEEESHH.......................................................HHHHHHTTEEEEEEESEHHHHSSEEEEEE CS
  Ribosomal_S8e  97 tKgaiievdvse.......................................................LgevtqsgkvvAqvtsrPgqdGcvnavlL 137
                    t++a++++d+++                                                       +++++++g+++A ++srPgq+G++++++L
     CCE30096.1  97 TRSAVVQIDAAPfrqwyeahygqpigrrrqkaqaakegkteeevkkskavekkqaerfaaagkvdpvVEKQFEAGRLYAIISSRPGQSGRCDGYIL 192
                    ***********************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1159  (0.0646439); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1513.34
//
Query:       CCE30097.1  [L=206]
Description: probable ribosomal protein Rps8bp [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-54  182.9   1.4    3.4e-54  182.7   1.4    1.1  1  Ribosomal_S8e  Ribosomal protein S8e


Domain annotation for each model (and alignments):
>> Ribosomal_S8e  Ribosomal protein S8e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.7   1.4   1.9e-58   3.4e-54       1     137 []       1     192 [.       1     192 [. 1.00

  Alignments for each domain:
  == domain 1  score: 182.7 bits;  conditional E-value: 1.9e-58
                    XXXBXXCCCSEESSTEEXXXSSXXXCCSBXXXXXXXEESSHEEEEEEETTCEEEEEEESESEEEEEETTTTEEEEEEEEEEECSSSTCHHHHTTC- CS
  Ribosomal_S8e   1 mgisrdskhkrkltGgkakllrkkrkielgrkekatklgaervkvvrvrgGkrkkralrlkkanvthpeekvtkklkIlgVkknpsnneyvrlgvl 96 
                    mgisrds+hkr+++G+k++ +rkkr++e gr+ ++t++ga+rv++vr+rgG++k+ralrl+++n+++++e++t+k++++ V ++psnne+vr+++l
     CCE30097.1   1 MGISRDSRHKRSASGAKRAYYRKKRAFEAGRQGANTRIGAKRVHTVRTRGGNHKYRALRLDSGNFAWASEGCTRKTRVIAVAYHPSNNELVRTNTL 96 
                    99********************************************************************************************** PP

                    -TTEEEEEESHH.......................................................HHHHHHTTEEEEEEESEHHHHSSEEEEEE CS
  Ribosomal_S8e  97 tKgaiievdvse.......................................................LgevtqsgkvvAqvtsrPgqdGcvnavlL 137
                    t++a++++d+++                                                       +++++++g+++A ++srPgq+G++++++L
     CCE30097.1  97 TRSAVVQIDAAPfrqwyeahygqpigrrrqkaqaakegkteeevkkskavekkqaerfaaagkvdpvVEKQFEAGRLYAIISSRPGQSGRCDGYIL 192
                    ***********************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1159  (0.0646439); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1518.82
//
Query:       CCE30098.1  [L=717]
Description: uncharacterized protein CPUR_03946 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   11.6   0.0       0.33   10.5   0.0    1.4  1  DUF3884   Protein of unknown function (DUF3884)


Domain annotation for each model (and alignments):
>> DUF3884  Protein of unknown function (DUF3884)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   1.9e-05      0.33      20      62 ..     488     528 ..     480     534 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 1.9e-05
     DUF3884  20 eeilkkLGkWlvttgdeWiChSdlekeeFkkkFlelteltvde 62 
                  +i+ +LG W    ++ W+ + ++e   F+k   +l +l++++
  CCE30098.1 488 AKIVTELGSWSQ--SKRWMSQTSKERMMFQKVITNLFHLSANK 528
                 57899*****54..689***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 5450.14
//
Query:       CCE30099.1  [L=307]
Description: related to TSC13-required for elongation of VLCFA moiety of sphingolipids [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-27   95.1   0.2    5.9e-27   94.5   0.2    1.3  1  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
     0.0012   18.4   0.6     0.0021   17.6   0.2    1.5  1  DUF1295     Protein of unknown function (DUF1295)


Domain annotation for each model (and alignments):
>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.2   6.5e-31   5.9e-27       1     149 [.     156     306 ..     156     307 .] 0.93

  Alignments for each domain:
  == domain 1  score: 94.5 bits;  conditional E-value: 6.5e-31
  Steroid_dh   1 akmpllivakavl.fcvlnGllqarylsyyqpy..aedylkkdrlllgivlfvlgmliniksdiiLrelrkegetkykiprgglFelvsapnyfgEile 96 
                 ++mp+++++k+ + ++ ++Gll a  +s+y p   a    +    l+g++l++++++ n   +  L +lr +g t++kip g+ F lv++pny++Eil 
  CCE30099.1 156 NTMPVFNIFKNSFfYWAISGLLCA--VSIYSPRslAARAEQPLIDLVGLALYLFSETGNALVHLYLSSLRSPGGTERKIPSGYGFSLVTCPNYMYEILA 252
                 68********9888**********..78888766655555666679***************************************************** PP

  Steroid_dh  97 wigyalvtkslaalaFalftvlnltvraaahhkwykkkf.ekYpksRkiliPfv 149
                 w g  +v++ +  + F     +++ ++a+ +   y+k+f +kY k+R  ++P +
  CCE30099.1 253 WAGIIIVSRDWSVALFISIGAAQMYTWAKGKEMAYRKEFpDKYKKKRYGILPGL 306
                 ***************************************889*****9999976 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   2.4e-07    0.0021      92     203 ..     169     279 ..     149     283 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.4e-07
     DUF1295  92 vlQavllylvalpvllaaaskeeqalkaldviglalwlvgivlealaDqQlsafkkdpankgkvldsGL.wrysRHPNYfgealiWwglflialealeg 189
                    a+  +l a++++   +    ++   +d++glal+l+  +++al    ls+ ++    + + + sG  +++   PNY+ e+l W g+++++    + 
  CCE30099.1 169 FYWAISGLLCAVSIYSPRSLAARAEQPLIDLVGLALYLFSETGNALVHLYLSSLRSPGGTE-RKIPSGYgFSLVTCPNYMYEILAWAGIIIVSRDW-SV 265
                 44456666677777777766666777889999********999999999999998755544.45555544999999*************9998765.66 PP

     DUF1295 190 lealaiagpllltl 203
                 +++++i ++ + t+
  CCE30099.1 266 ALFISIGAAQMYTW 279
                 66899888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2438.31
//
Query:       CCE30100.1  [L=307]
Description: uncharacterized protein CPUR_03948 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-13   48.5   0.2    1.2e-12   47.9   0.2    1.2  1  GCN5L1           GCN5-like protein 1 (GCN5L1)
  ------ inclusion threshold ------
       0.16   10.8   1.5       0.22   10.4   1.5    1.1  1  Spc7             Spc7 kinetochore protein
        3.7    6.4  10.3        4.3    6.2  10.3    1.1  1  CytochromB561_N  Cytochrome B561, N terminal


Domain annotation for each model (and alignments):
>> GCN5L1  GCN5-like protein 1 (GCN5L1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.2   2.1e-16   1.2e-12      25     111 ..     104     190 ..      92     193 .. 0.93

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 2.1e-16
      GCN5L1  25 esaaaltealvdklnsgvaeayanqkklekeakalqanvakfakqtdqWlalvesfnsalkeiGDvenWaktienDlksitealeyv 111
                 + +a++ + l  +l+s+ + +++n+  l+k+  ++ ++++ ++++ ++ ++ +++  +++ke+GDv+nWa+ +e+ + +++e+++ +
  CCE30100.1 104 AVVASMGNLLDSELQSRASLLHSNAMVLDKQEGDVVRATDMLRQEREKLAREADQAARKVKEVGDVQNWAELLERGFLVLEETIRLA 190
                 347899*****************************************************************************9976 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.5   3.7e-05      0.22     140     197 ..     113     170 ..     108     178 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.7e-05
        Spc7 140 LkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesid 197
                 L ++l+++ + l + + +L+kqe  + ++ + l++e+++l +e+++  ++++e+ +++
  CCE30100.1 113 LDSELQSRASLLHSNAMVLDKQEGDVVRATDMLRQEREKLAREADQAARKVKEVGDVQ 170
                 7899***********************************************9998876 PP

>> CytochromB561_N  Cytochrome B561, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  10.3   0.00071       4.3     125     210 ..      14      96 ..       2     166 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00071
  CytochromB561_N 125 srkkpPksksslqasssevlvplhqsvsssss.esrkgsdkssagsgkkleSistsskssaspsvylrss..lvdlsssplssnlsaen 210
                      ++ + P  +     ss  ++ p    +sssss +s+ + ++s a++  +  S+s +s+s+  p  y +s+    + ++s++++  s+++
       CCE30100.1  14 HHLGMPAPQ---LFSSTYPPYPP---YSSSSSsSSSPSPSSSMAAYPPSPPSLSMPSSSAQPPYAYGHSEshASPPPQSQTPPSPSTQH 96 
                      555666655...45555555776...6666665788899999*****************888899977767744445555544333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1028  (0.0573373); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2243.98
//
Query:       CCE30101.1  [L=980]
Description: related to adenylate cyclases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-73  247.1   7.2    2.3e-52  178.9   1.0    3.9  5  SOG2      RAM signalling pathway protein
    9.6e-18   63.7   2.8      2e-08   33.9   0.4    2.6  2  LRR_8     Leucine rich repeat
    1.2e-12   47.8   7.4    2.3e-05   24.7   0.5    3.9  4  LRR_4     Leucine Rich repeats (2 copies)
      0.001   19.3  10.9        2.6    8.9   0.2    5.7  5  LRR_1     Leucine Rich Repeat
  ------ inclusion threshold ------
      0.017   15.7   0.0      0.048   14.2   0.0    1.7  1  DUF2408   Protein of unknown function (DUF2408)
       0.59   10.3   6.1        1.7    8.9   0.0    4.4  5  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   0.9       4.4   1.3e+04     270     330 ..      52      63 ..      27      87 .. 0.38
   2 ?   -3.4   1.6       1.4   4.1e+03     168     231 ..     336     405 ..     317     442 .. 0.46
   3 !  178.9   1.0   7.6e-56   2.3e-52       1     158 [.     446     601 ..     446     613 .. 0.96
   4 !   80.8   0.6   4.2e-26   1.3e-22     283     506 ..     609     835 ..     601     836 .. 0.81
   5 ?   -8.0  10.9         6   1.8e+04     178     286 ..     853     954 ..     839     979 .. 0.32

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 4.4
        SOG2 270 asssgvqssasstPlgegstsppgalsrqslsttgststltsssksrsssrsntnasastp 330
                 +s+s+                                                 na+++  
  CCE30101.1  52 NSNSR-------------------------------------------------NAASNGG 63 
                 11111.................................................1111111 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.4
        SOG2 168 kkkragrtksksisttssgssstlvssaesstesrassvtyta..rt.....RhagsfsaqdveqGaaltp 231
                 ++++  r +s+++  t+   + ++ ++ + +++ r+ s  +++  r+     R  g+ s++ +e G+  + 
  CCE30101.1 336 PNRSHYRGLSQQNTATR-RPGVMPLTIGSVNERLRSNSESLLRadRGpngrsRRMGIVSRKTSELGTLDET 405
                 33333333333333333.22233444444444444444444443322444447788888888888876662 PP

  == domain 3  score: 178.9 bits;  conditional E-value: 7.6e-56
        SOG2   1 YfrRLSvLPeetiskavkvpllelVdaaRglLFalsqihqairqitsfvkeeria.vslerllysasshidnLieaLerfdslesrrgtpspsvdravi 98 
                 Y+rRLSvLPe++ +++v +p++   +aa+g+L++++qih++i+ ++++ ++ +++ +sle+++y+++sh+++L++ ++r+d +  +  + s +++++v 
  CCE30101.1 446 YVRRLSVLPERRRESQVFDPVI---EAAKGILYSIFQIHPMIQILMTLTSDGSAKrSSLEIVFYNTNSHVEELEQEIQRHDTALLKHDEHSVRENENVY 541
                 9*********************...**********************************************************9999************ PP

        SOG2  99 klCktivsaFkkiisvLrknlkafvesdDvrYiRtllLmlygSmaEvrnawksiapelea 158
                 ++C+t+vsa+++++++L  n+++fv+++D rYiRtll++ly S++E+r + +s+++++ +
  CCE30101.1 542 RACQTLVSAYGHVCTLLADNIDTFVNNGDARYIRTLLMLLYNSVMELRVTLASMTALKPQ 601
                 *******************************************************99953 PP

  == domain 4  score: 80.8 bits;  conditional E-value: 4.2e-26
        SOG2 283 Plgegstsppgalsrqslsttgststltsssksrs.ssrsnt..nasastprslattpappasaesfastltasrintlaa...vDeq........lle 367
                 P+ +++t +    +r+s +t++ ++t ++  k+ s +  ++t  ++++  p+  ++ +  +a  +s+a+++ +s++++ +    vD +        ++ 
  CCE30101.1 609 PPDTNETMK--PYQRESFATPTTDRTAKMRGKNGSvA-HNSTslRVATDIPAHYSNGQYLTAKLASTAPRSGGSSSSSGTRdhaVDRTgedvrferIVV 704
                 444444444..56677777777777777776666642.2222346666666666666666666666544444555555554688888899999999*** PP

        SOG2 368 tletavklalvvysqlteeiskvaeassagqqrlteelakkirdLtdtcrqameltkaLrerLsllklkedlsekgsttsektklwedinaFlksivsi 466
                  +++ ++++l++++    +++ +++  sa+qqr + + a+ ++ L+  c ++ ++++a r+rL +++lk+      ++ +++ ++w ++++F++s+ s+
  CCE30101.1 705 SIKKSIDAVLRTLPNYLVQLQGCLR--SAMQQRVPLAHAQDWKSLISVCGNTIQQSEAMRNRLATINLKD------PSVRSQPAFWTLCHNFVQSWTSF 795
                 *************************..89*************************************8777......789******************** PP

        SOG2 467 laliKelslmhelPnevrpnLaslakatkevtvlLdlsSy 506
                 +  iK+ ++ +++P+++   L+++++ +k +++ +  s++
  CCE30101.1 796 VHGIKMSINRASIPSDTPMRLRPVQESMKQTGIAIVQSPW 835
                 ***************************************9 PP

  == domain 5  score: -8.0 bits;  conditional E-value: 6
        SOG2 178 ksisttssgssstlvssaesstesrassvtytartRhagsfsaqdveqGaaltplrsdqipfnl.........................srsrrssssg 251
                 +s+s + s+++ t+ s a  +  + + s+t+ +                              +                         sr+ +s + +
  CCE30101.1 853 SSNSGSFSQTPITPQSAALGPALQATVSTTPHS------------------------------AsfaaafqgnvfdradalianpgismSRNGASYKGH 921
                 222222222333333333332222222222222..............................112222222222222222222222225555555555 PP

        SOG2 252 nsaspaangaqsetsersasssgvqssasstPlge 286
                  + ++ ++++++++s+ ++++  ++s +++t lg 
  CCE30101.1 922 VGFNSLSSISSMSSSDGNNTA--SSSFSPKTGLGL 954
                 555555555544444422222..222222222222 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   1.6e-10   4.8e-07       5      60 ..     109     164 ..     108     165 .. 0.91
   2 !   33.9   0.4   6.6e-12     2e-08       2      61 .]     177     234 ..     176     234 .. 0.97

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.6e-10
                 EEE-TTS--SEE-TTSSTT.-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8   5 sLdLsnNrltslddeaFkg.lsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60 
                 +LdLs+  +++l+ e+      +L+ L Ls+Nllt+l p  fs ++sLr+L+++gN+
  CCE30101.1 109 TLDLSRKGIEHLPEEVVVIvKDQLERLALSHNLLTSL-PVKFSECTSLRYLNIRGNQ 164
                 68999999999999988885578**************.9*****************8 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 6.6e-12
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L++LdL +N l +l++   k l++LkvL+  +N ++ l p +++++ sL+ L L+gN++
  CCE30101.1 177 SLEILDLGRNFLRNLPPAISK-LTSLKVLSVPRNHIREL-PLCLADMGSLQVLKLDGNPI 234
                 79****************999.*****************.9*****************97 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.5   7.6e-09   2.3e-05       2      39 ..     131     168 ..     130     175 .. 0.87
   2 !   24.5   0.9   8.6e-09   2.6e-05       1      40 [.     153     192 ..     153     200 .. 0.85
   3 !   16.7   0.4   2.4e-06    0.0071       1      30 [.     176     206 ..     176     207 .. 0.92
   4 !   14.3   0.1   1.4e-05     0.041       1      36 [.     199     234 ..     199     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 7.6e-09
                 S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39 
                 +Le L Ls+N lt++p  ++ +++L++L++ gN +  d+
  CCE30101.1 131 QLERLALSHNLLTSLPVkFSECTSLRYLNIRGN-QMIDF 168
                 69***************9888*********888.65577 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 8.6e-09
                 SS--EEE--SS---E-S-HH.H-TT--EEE-.-S-----GG CS
       LRR_4   1 pnLevLdLsnNqltdiplle.klpnLkeLdLsgNnlitdld 40 
                 ++L++L++++Nq+ d+pl+   l++L+ LdL +N ++++l+
  CCE30101.1 153 TSLRYLNIRGNQMIDFPLPLcDLKSLEILDLGRN-FLRNLP 192
                 79****************5526*********556.999986 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 2.4e-06
                 SS--EEE--SS---E-S-.HHH-TT--EEE- CS
       LRR_4   1 pnLevLdLsnNqltdipl.leklpnLkeLdL 30 
                 ++Le+LdL+ N l+ +p+ ++kl++Lk+L++
  CCE30101.1 176 KSLEILDLGRNFLRNLPPaISKLTSLKVLSV 206
                 68****************7778*******85 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 1.4e-05
                 SS--EEE--SS---E-S-.HHH-TT--EEE-.-S--- CS
       LRR_4   1 pnLevLdLsnNqltdipl.leklpnLkeLdLsgNnli 36 
                 ++L+vL+   N+++++pl l+ + +L++L L gN +i
  CCE30101.1 199 TSLKVLSVPRNHIRELPLcLADMGSLQVLKLDGN-PI 234
                 69****************8889*********999.54 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.19   5.6e+02       1      17 [.     131     147 ..     131     151 .. 0.87
   2 !    6.4   0.1    0.0059        18       1      18 [.     154     171 ..     154     174 .. 0.85
   3 !    8.9   0.2   0.00087       2.6       1      21 [.     177     196 ..     177     198 .. 0.76
   4 ?   -1.0   0.1       1.6   4.9e+03       1      19 [.     200     217 ..     200     219 .. 0.79
   5 ?    4.4   0.0     0.028        83       1      19 [.     223     240 ..     223     244 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.19
       LRR_1   1 nLrhLdLsnnpllglpp 17 
                 +L++L Ls+n l++lp 
  CCE30101.1 131 QLERLALSHNLLTSLPV 147
                 599*********99986 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0059
       LRR_1   1 nLrhLdLsnnpllglppn 18 
                 +Lr+L++++n+ +++p +
  CCE30101.1 154 SLRYLNIRGNQMIDFPLP 171
                 69*********9888865 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00087
       LRR_1   1 nLrhLdLsnnpllglppnsfq 21 
                 +L+ LdL++n+l + +p++++
  CCE30101.1 177 SLEILDLGRNFL-RNLPPAIS 196
                 69**********.55555555 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.6
       LRR_1   1 nLrhLdLsnnpllglppns 19 
                 +L++L + +n++ + +p +
  CCE30101.1 200 SLKVLSVPRNHI-RELPLC 217
                 69*****99999.666655 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.028
       LRR_1   1 nLrhLdLsnnpllglppns 19 
                 +L++L L +np+ ++pp++
  CCE30101.1 223 SLQVLKLDGNPI-SFPPRD 240
                 69**********.899987 PP

>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.6e-05     0.048      18     126 ..     486     596 ..     466     606 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
     DUF2408  18 irrsLlslaakskaeeakesee......vkeelkelkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqd..geekkvassl 108
                 i+ +L s  + ++++              +++++el++e+++ ++   ++++   +e+++v  + q++++   + c  l++++ +    g+++++++ l
  CCE30101.1 486 ILMTLTSDGSAKRSS------LeivfynTNSHVEELEQEIQRHDTALLKHDEHSVRENENVYRACQTLVSAYGHVCTLLADNIDTFVnnGDARYIRTLL 578
                 333333333333333......144555599***************999999999999999**********************99755458899****** PP

     DUF2408 109 qpiYdrLleikttLenLl 126
                   +Y++ +e++ tL +++
  CCE30101.1 579 MLLYNSVMELRVTLASMT 596
                 **************9987 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.38   1.1e+03       5      16 ..     132     143 ..     131     144 .. 0.87
   2 ?    8.9   0.0   0.00057       1.7       2      15 ..     152     166 ..     151     167 .. 0.88
   3 ?   -0.5   0.1      0.58   1.7e+03       4      13 ..     177     186 ..     175     188 .. 0.89
   4 ?   -1.4   0.0       1.2   3.5e+03       2      15 ..     198     211 ..     197     212 .. 0.84
   5 ?   -1.9   0.0       1.7   4.9e+03       4      16 ..     223     235 ..     223     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.38
       LRR_6   5 LteLdLsgNdIg 16 
                 L+ L Ls+N ++
  CCE30101.1 132 LERLALSHNLLT 143
                 899******886 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00057
       LRR_6   2 nthLteLdLsgNd.I 15 
                 +t+L++L+++gN+ I
  CCE30101.1 152 CTSLRYLNIRGNQmI 166
                 89**********955 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.58
       LRR_6   4 hLteLdLsgN 13 
                 +L+ LdL  N
  CCE30101.1 177 SLEILDLGRN 186
                 89*****998 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1.2
       LRR_6   2 nthLteLdLsgNdI 15 
                  t+L+ L++  N+I
  CCE30101.1 198 LTSLKVLSVPRNHI 211
                 589****9999988 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 1.7
       LRR_6   4 hLteLdLsgNdIg 16 
                 +L+ L L gN I+
  CCE30101.1 223 SLQVLKLDGNPIS 235
                 6999******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (980 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 7204.88
//
Query:       CCE30102.1  [L=297]
Description: related to recQ gene for DNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-15   56.6   0.0    5.7e-15   55.6   0.0    1.6  1  Helicase_C    Helicase conserved C-terminal domain
    2.3e-12   47.4   3.0    2.3e-12   47.4   3.0    1.8  2  RecQ_Zn_bind  RecQ zinc-binding


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   6.3e-19   5.7e-15      19     110 ..      90     183 ..      68     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 6.3e-19
                 EEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHH..HTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSST CS
  Helicase_C  19 ilifvntidrlekvklllekkgikvavlhgelpqnereeileqf..nkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRa 110
                  +i++ ++d++e+++  l+  gi + ++h++lp++ +e++l+++  n+  +d+++at++ ++Gid ++v++V++  +p++ + y q +GR+gR 
  CCE30102.1  90 GIIYTISRDECESLSAALRDAGIGARPFHAKLPKEVKEDTLSRWinNEAGYDIIVATTAFGMGIDKNNVRFVVHWRIPKSFEGYYQEAGRAGRD 183
                 499999*****8766667788***********************53367799*****************************************6 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.1     1e+04      23      39 ..      35      51 ..      27      61 .. 0.76
   2 !   47.4   3.0   2.6e-16   2.3e-12       2      63 ..     196     257 ..     195     258 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.1
  RecQ_Zn_bind 23 aelekleamlaycentt 39
                  a++++l+  ++y+ +++
    CCE30102.1 35 AQRHNLHMEIRYTRDED 51
                  57788888888886655 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 2.6e-16
  RecQ_Zn_bind   2 qDvsrlrrlieqseesekekeaelekleamlaycentteCrrkllleyFgeeaaeeeC.gnCD 63 
                   +D++r+ r+++++ +++ +  a+l++lea+  ycent++Cr+ ++++yFge+++  eC   CD
    CCE30102.1 196 EDLERVMRMVRGDCKEDPNATARLRSLEALATYCENTNSCRHAQICKYFGETSEP-ECdFACD 257
                   79********99988999999******************************7555.5*54599 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2507.01
//
Query:       CCE30103.1  [L=225]
Description: uncharacterized protein CPUR_03951 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-20   72.7   0.4    4.1e-20   72.2   0.4    1.2  1  DUF2470   Protein of unknown function (DUF2470)
  ------ inclusion threshold ------
      0.033   14.5   0.8      0.056   13.8   0.8    1.4  1  DUF4499   Domain of unknown function (DUF4499)
       0.11   12.9   0.0       0.16   12.3   0.0    1.3  1  PilZ      PilZ domain


Domain annotation for each model (and alignments):
>> DUF2470  Protein of unknown function (DUF2470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.4   6.8e-24   4.1e-20       2      77 .]      14      86 ..      13      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 6.8e-24
                HHHHHHHHHH-HHHHHHHHHHCST-TTCCEE..EEEEE-SSEEEEEEC.....CEEEEEE-SS---SCCHHHHHHHHH CS
     DUF2470  2 ariiaHMNkDHaddlllylrhygkvkeaksa..rmtdidldgltlrlgakagsektvripFdpplkswaearerLveM 77
                +riiaHMN+ H   l +ylrhy + +  +sa  ++ d++l+g+++r   ++   +++ ++F+ppl+sw ++r+r+veM
  CCE30103.1 14 DRIIAHMNQLHSRELTHYLRHYRGLTTRQSAgaTLHDLSLQGMRIR---AR--GIDHVVNFNPPLQSWTQVRQRVVEM 86
                79*********************66666555549************...45..369*********************9 PP

>> DUF4499  Domain of unknown function (DUF4499)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.8   9.4e-06     0.056      32      86 ..     149     206 ..     120     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.4e-06
     DUF4499  32 versqtllrlgfvlavliHvlEalya.lklckkkgisnaaa..lkWflqTlllGfaSl 86 
                 +e  ++l++++f+ ++ iH+lE ly  ++  +k+g+   ++  + W+++ +l Gf+++
  CCE30103.1 149 AETFRWLVKMIFLPVLGIHILEPLYFdMSRLRKHGVDRGSSlwWMWIVSCFLEGFTAF 206
                 567789******************95488999****999987889999****999875 PP

>> PilZ  PilZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.7e-05      0.16      19      71 ..      38      84 ..      22      98 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.7e-05
                EETTEEEEEEEEEEESSEEEEEEST-SS-TTSEEEEEEECECEEEEEEEEEEE CS
        PilZ 19 eadegelkgrliDiSlgGlairlpdeelalgdrvelklpldkdqelslpgrVv 71
                 +  ++  ++l+D+Sl G++ir++      g +  ++++++ + + +++ rVv
  CCE30103.1 38 LTTRQSAGATLHDLSLQGMRIRAR------GIDHVVNFNPPLQSWTQVRQRVV 84
                55666677889*************......55555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1950.12
//
Query:       CCE30104.1  [L=818]
Description: uncharacterized protein CPUR_03952 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-12   46.3   0.7    4.5e-12   45.6   0.7    1.3  1  Fungal_trans    Fungal specific transcription factor domain
    1.3e-06   28.4   8.6      3e-06   27.2   8.6    1.6  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain
     0.0055   16.7   0.1      0.011   15.7   0.1    1.5  1  JAKMIP_CC3      JAKMIP CC3 domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.7   7.5e-16   4.5e-12       2     198 ..     269     467 ..     268     500 .. 0.84

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 7.5e-16
  Fungal_trans   2 drffsnfhpqfpilhkpsflpkt.....ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeili....hedfsspss 89 
                   +++ + f +   i+h p+f +++     +  + +    a ++l+l+i+a+++     ++ +    +  ++++  ++  r+ i      +++ ++ ++
    CCE30104.1 269 SVYLDQFEQIHRIVHIPTFRKEYadfwrQPPSMRYRGAAMTALVLSIMAVASCVHTRDKFR----FIGMMSNARHWAERWIIACdgwlSRQSQKHRK 361
                   678888887779************9776666666677788888899999987654444444....57777677777778877779997777777777 PP

  Fungal_trans  90 slwilq.sLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpL 185
                    l + q + ll+     ++ +++ ++  +g  ++   s+gLhr+ps+ g   + k ++ ++e+rrR+w ++  +D + ++++G p+ll+    +++ 
    CCE30104.1 362 -LIHFQiACLLYLGKRVNTIKKKRFWTSSGALIQDGISVGLHREPSHMG---GGKITIYNQEMRRRIWTTVQEFDMQASFDHGLPTLLSQLHYDTNP 454
                   .*****9888888888899999***************************...689***99************************************* PP

  Fungal_trans 186 Pcddddlwesdda 198
                   P + dd+++ +++
    CCE30104.1 455 PSNLDDEDFDEET 467
                   *****99887765 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   8.6   5.1e-10     3e-06       2      36 ..      34      68 ..      33      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 5.1e-10
                S-HHHHHCT---STSSSS-HHHHHCT..HHHCCCCTC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkkln..leCtfyses 36
                +C +Cr++K  Cd+++P C +C+k+     C+ y+ +
  CCE30104.1 34 SCLECRRRKLSCDRGFP-CERCIKSDtpDRCS-YESR 68
                8****************.*******9888899.7655 PP

>> JAKMIP_CC3  JAKMIP CC3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.9e-06     0.011      60     141 ..     468     549 ..     414     584 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-06
  JAKMIP_CC3  60 kglkdeqvaeeeselrfrqLlaeyqalqrayalLreklggeldaerelkareqleselrktkskikdLeeaLaqkGqdskwv 141
                  +l   + a e++   f+ L+++   l+++++ L +  ++e+d e++++  + l +e+    s     +     +G+ +k+ 
  CCE30104.1 468 TSLPPSKAATEYTFCSFQNLTRQSLPLRLELSRLLTGPSAEIDYEQVIRYTNDLTHEIDALPSWDMSVQGVQGVQGSTTKNK 549
                 22333467788888899****************************************9988776555555555666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.38
# Mc/sec: 6476.92
//
Query:       CCE30105.1  [L=416]
Description: uncharacterized protein CPUR_03953 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3472.51
//
Query:       CCE30106.1  [L=897]
Description: related to ATP dependent RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-34  118.6   0.0    2.2e-17   63.4   0.1    2.3  2  DEAD           DEAD/DEAH box helicase
    5.9e-21   74.9   0.0    1.6e-20   73.5   0.0    1.7  1  Helicase_C     Helicase conserved C-terminal domain
    8.4e-09   35.6   0.0    8.6e-08   32.4   0.0    2.6  2  ResIII         Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.15   11.6   0.0       0.15   11.6   0.0    2.3  2  UvrD-helicase  UvrD/REP helicase N-terminal domain
       0.37   11.2  18.0      0.084   13.3   2.1    3.3  2  DUF4692        Regulator of human erythroid cell expansion (R


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.1   6.1e-21   2.2e-17       2      94 ..     355     457 ..     354     474 .. 0.88
   2 !   52.9   0.0     1e-17   3.7e-14      95     174 ..     516     603 ..     506     605 .. 0.84

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 6.1e-21
                 HHHHHHHHHHH.....TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST......SEEEEEETTSSHHH CS
                 xxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.....gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid......lrvlliiggvaard 89 
                 ++Q +aipl+l     + gdvlv+a+TGsGKTla+++p+++ +++    t+ +al+v PtreL++q  + ++ + k ++      +rv + ig+++ ++
  CCE30106.1 355 AVQTAAIPLLLptskqRAGDVLVSAATGSGKTLAYALPIVRDISQ-GVVTRLRALVVLPTRELVKQAQDVFEICAKAYEsedrkrVRVGVAIGSQSIKS 452
                 79*********88766559************************87.999**********************99999655567888999999**999999 PP

                 HHHHH CS
                 xxxxx RF
        DEAD  90 qlskl 94 
                 ++++l
  CCE30106.1 453 EQEAL 457
                 98887 PP

  == domain 2  score: 52.9 bits;  conditional E-value: 1e-17
                 HTTCSEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTT.........SEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxx RF
        DEAD  95 dngvdivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklq.........rqvivlSATlpkdvk 174
                  ++vdi++ tpgrl++++ +t  +nl+ vr+lV+DEad+l++q+f+ +++ +l +++  t++ ++           + ++lSATl++d++
  CCE30106.1 516 TSKVDILICTPGRLVEHIeQTPGFNLDYVRWLVVDEADKLMSQSFQGWLELVLDKFQ--TKRFSARdfpdmaysgVRKVILSATLTRDLS 603
                 378***************77888*********************************4..333332247889998888*********9875 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   4.4e-24   1.6e-20      19     111 .]     733     831 ..     727     831 .. 0.88

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 4.4e-24
                 EEEEESSHH...HHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  19 ilifvntid...rlek.vklllekkgikvavlhgelpqnereeileqfn..kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                 +lif+++ +   rl++ ++ll  + + ++ +l++++ +  r++il++f   +  ++++ia+d ++rGidipk+++Vin+dlp +v+ y++r+GRt+Rag
  CCE30106.1 733 CLIFTKSNEsalRLSRlLTLLDASLETQIQTLTSTTATHIRRKILRAFTtpASPVRLIIASDLVARGIDIPKLQHVINYDLPASVAGYVHRVGRTARAG 831
                 58999999965544434555544459**********************97778899*****************************************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.59   2.1e+03      83     136 ..     134     188 ..     111     192 .. 0.62
   2 !   32.4   0.0   2.4e-11   8.6e-08       7     122 ..     356     492 ..     350     599 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.59
                 ..GEEEESSS-B--.................-SEEEEEHHHHHHTH........HHHTTT-SEE CS
      ResIII  83 keigkkvsgdkkka..........kekdstnkkilvttiqsldadseeeeeeseellrdrfdvi 136
                 k+     + +k+k+          ++ +s+n++  v+t ++  +d+    + +e  l +++dv+
  CCE30106.1 134 KK-----NRRKRKQrtraaddsddESDESDNSQGPVETPSKPAKDR----QRKEMPLAQEEDVV 188
                 22.....112222233334555556888999999999999999998....44445555555555 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 2.4e-11
                 HHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.......-EEEEESSHHHHHHHHHHGGGGTGG................GEEEESS CS
      ResIII   7 yQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee..kflflvprkslleqtleefkkflseayke............igkkvsg 91 
                  Q+ ai  ll + k +r   +l+ +aTG+GKTl +a  i r  ++g     ++l++ p+++l++q+++ f+ +++ + +e             + ++s+
  CCE30106.1 356 VQTAAIPLLLPTSK-QRAGDVLVSAATGSGKTLAYALPIVRDISQGVVTrlRALVVLPTRELVKQAQDVFEICAKAYESEdrkrvrvgvaigSQSIKSE 453
                 56666766666665.78889***************6655555555555569*******************88888877666666665554432222222 PP

                 S-B--.......-SEEEEEHHHHHHTH................ CS
      ResIII  92 dkkkakekdstnkkilvttiqsldadseee............e 122
                 ++  +    + ++++   t+q+++++ +++            e
  CCE30106.1 454 QEALI----DRDSRYDPDTYQAIQEEHNQKrasgptsadvddE 492
                 22222....3444444444444444443333334434333330 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -11.3  10.4         5   1.8e+04     168     183 ..     180     239 ..      86     294 .. 0.45
   2 ?   11.6   0.0   4.1e-05      0.15      13      51 ..     372     410 ..     366     436 .. 0.88

  Alignments for each domain:
  == domain 1  score: -11.3 bits;  conditional E-value: 5
                    H............................................HHHCCCHHHHHCHHH CS
  UvrD-helicase 168 k............................................keelslskskaeelr 183
                    +                                            ke++   ++k++ ++
     CCE30106.1 180 PlaqeedvvmedrgdavgdnedvdgdvqmdhgstvdtqpepespvKEKKLKREKKKKPVK 239
                    033333333333333333444444444444444444333333333222222223333333 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 4.1e-05
                    SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEE CS
  UvrD-helicase  13 ggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvv 51 
                     g++lv+A+ GsGKT   a  i+r i ++ ++  r lvv
     CCE30106.1 372 AGDVLVSAATGSGKTLAYALPIVRDISQGVVTRLRALVV 410
                    689************************997766666655 PP

>> DUF4692  Regulator of human erythroid cell expansion (RHEX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   6.8     0.038   1.4e+02      35      95 ..     100     165 ..      91     183 .. 0.60
   2 ?   13.3   2.1   2.3e-05     0.084      39     125 ..     657     744 ..     652     749 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.038
     DUF4692  35 serllkaarlqapepspahksp.paakel..ketraerstsvsepryrhdsdtssdssdssds..s 95 
                 s + lk+ ++++ e++  ++ + p  +e+  ++ +++r+ + + +r  +dsd  sd sd+s++  +
  CCE30106.1 100 SAKKLKKGKTESHEANGVERGAgPGLTERssEKKKKNRRKRKQRTRAADDSDDESDESDNSQGpvE 165
                 567778888877776665543314444430033444455555555667789988888888888542 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.3e-05
     DUF4692  39 lkaarlqapepspahksppaakelketraerstsvsepryrhdsdtssdssdssds..sspptsqatkdvnYtqvvFsapgglknesal 125
                 l+++ ++   +++ ++ p+++ + ke++ + +    + + +++sdtssd sd+s      +++ +a   +  tq+      +++nesal
  CCE30106.1 657 LRGSDMKNVAAKEGEDAPLSKVS-KESKDDGKSDSGSDTSSDESDTSSDDSDASGDspDGSSSAKARTTIPNTQLPICLIFTKSNESAL 744
                 66666777777778888888877.88888888888888999********9999876244445677778888888877777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1167  (0.0650901); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.47
# Mc/sec: 5777.77
//
Query:       CCE30107.1  [L=493]
Description: probable to N-acetylglucosaminyltransferase SPT14 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-46  156.2   3.7    4.2e-46  155.5   1.4    2.2  2  PIGA             PIGA (GPI anchor biosynthesis)
      5e-28   97.8   0.0      8e-28   97.1   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
      1e-26   93.9   0.4    1.5e-26   93.4   0.4    1.3  1  Glyco_transf_4   Glycosyltransferase Family 4
    5.5e-24   85.1   0.0    1.2e-23   84.0   0.0    1.5  1  Glyco_trans_1_4  Glycosyl transferases group 1
    1.3e-10   41.9   0.0    2.1e-10   41.2   0.0    1.4  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    0.00038   20.5   0.1     0.0007   19.6   0.1    1.4  1  Glyco_trans_4_2  Glycosyl transferase 4-like
     0.0048   17.3   0.0      0.018   15.4   0.0    2.0  2  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> PIGA  PIGA (GPI anchor biosynthesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   1.4   1.7e-49   4.2e-46       1      90 []      45     134 ..      45     134 .. 0.99
   2 ?    0.0   0.0      0.51   1.3e+03      42      81 ..     285     321 ..     261     323 .. 0.78

  Alignments for each domain:
  == domain 1  score: 155.5 bits;  conditional E-value: 1.7e-49
        PIGA   1 hayedrkGvryltnglkvYyvPllvlyrevtlptvlstlpllrnillrekidivhghqalstlaheailhaktlGlktvftDhsLfgfad 90 
                 h+++drkGvryltnglkvY+vP+lv+yr++t+ptv+s++p+lr i++re+i+ivhgh++ls l+he ilha+t+Gl+tvftDhsLfgfad
  CCE30107.1  45 HSHDDRKGVRYLTNGLKVYHVPFLVIYRQATFPTVFSFFPILRYIFIRERIEIVHGHGSLSCLCHEGILHARTMGLRTVFTDHSLFGFAD 134
                 99**************************************************************************************98 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.51
        PIGA  42 lrnillrekidivhghqalstlaheailhaktlGlktvft 81 
                 +r +++r +i     h +l+     +i+ a + Gl +v t
  CCE30107.1 285 VRDVMIRGHIY---LHPSLTEAFGTVIVEAASCGLYVVCT 321
                 56677777664...58899999999999999999999987 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   3.1e-31     8e-28      13     144 ..     213     343 ..     205     371 .. 0.93

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 3.1e-31
                      TT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS- CS
  Glycos_transf_1  13 ekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgfG 106
                      ++  +i++++rl ++Kg dlli a++++ ++ +pn++++iaG+g++   l++++e+  l+d+v++lg v +ed+  ++ + +i+++ps +E+fG
       CCE30107.1 213 NDMITIVVISRLFYNKGTDLLIAAIPRILET-HPNTRFIIAGSGPKAIDLEQMIEQNVLQDRVEMLGPVRHEDVRDVMIRGHIYLHPSLTEAFG 305
                      5667899**********************98.************************************************************** PP

                      HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT- CS
  Glycos_transf_1 107 ivllEAmaaglpviasnaggpaevvkdgetGllvkpnn 144
                      +v++EA ++gl v+++++gg++ev+ ++ t + +++++
       CCE30107.1 306 TVIVEAASCGLYVVCTQVGGIPEVLPSHMTTFAKPEED 343
                      *************************9999988777774 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.4   5.8e-30   1.5e-26       1     167 [.      19     184 ..      19     187 .. 0.91

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 5.8e-30
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeev....elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalga..all 89 
                     +GG+e h+++L+  L +rGh+V ++t+++d++ + +       v+ vp   +   + ++  ++f++ lr ++ re++ +vH h++ ++++  + l
      CCE30107.1  19 PGGIESHIYQLSSKLIDRGHKVIIITHSHDDRKGVRYltngLKVYHVPFLVIYRQATFPTVFSFFPILRYIFIRERIEIVHGHGSLSCLCheGIL 113
                     59******************************9999897776666666777777778888999999******************99997654667 PP

  Glyco_transf_4  90 alrrrlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvD 167
                      +r   g+++V+t H+l+      ++   +s+l ++l++++l+ +d+ i+vS++++++ + r  ++p  + Vipn+v 
      CCE30107.1 114 HART-MGLRTVFTDHSLF------GFADAASILTNKLLKFILSDVDHSICVSHTCKENTVLRASLDPLMVSVIPNAVV 184
                     7776.*************......99*************************************************995 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   4.8e-27   1.2e-23       3     129 ..     217     350 ..     216     355 .. 0.85

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 4.8e-27
                      EEEEES---GG.GTHHHHHHHHHHHH.H.H.EEEEEES---..HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--..---SHHHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkk.d.vrlvivGdgprpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs..egfglkll 88 
                      +i+ ++rl  n kg dll+ a+p++++  +  r++i+G+gp++ +le++++   l++rve++G v  ed+++++ + ++++ Ps  e fg +++
       CCE30107.1 217 TIVVISRLFYN-KGTDLLIAAIPRILEThPnTRFIIAGSGPKAIDLEQMIEqnVLQDRVEMLGPVrhEDVRDVMIRGHIYLHPSltEAFGTVIV 309
                      6999****557.**************88526*********96679999886666899*********999****************99******* PP

                      HHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHH CS
  Glyco_trans_1_4  89 EamaaglpvVatdvggiaevv..gengllvppgdpealaeail 129
                      Ea+++gl vV+t+vggi+ev+    + +  p  ++++l+ a +
       CCE30107.1 310 EAASCGLYVVCTQVGGIPEVLpsHMTTFAKP--EEDDLVLATC 350
                      *******************998545545444..5566665555 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   8.4e-14   2.1e-10       1     159 [.      20     181 ..      20     182 .. 0.82

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 8.4e-14
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvlt.papapgapeleedgvrvhrlp..vprrps.pladlaalralrrllrqrrerpdvvhahsptaglaa.. 88 
                      gGi+ ++++l++ L +rGh V ++t ++++++  ++  +g+ v+++p  v +r++  ++  ++ + lr ++   rer+ +vh h++++ l    
       CCE30107.1  20 GGIESHIYQLSSKLIDRGHKVIIIThSHDDRKGVRYLTNGLKVYHVPflVIYRQAtFPTVFSFFPILRYIF--IRERIEIVHGHGSLSCLCHeg 111
                      8************************75556666668899********886677762666689999999999..9************99988744 PP

  Glyco_trans_4_4  89 .rlarrrrgiplvvtlhglllrrg.sgavrrlyralerrllrradavlvvseaeaeelr.algvpadrvvvvpn 159
                       ++ar + g++ v+t h+l    g + a+  l   l +++l+ +d+ ++vs+   e  + +  +++  v v+pn
       CCE30107.1 112 iLHAR-TMGLRTVFTDHSLF---GfADAASILTNKLLKFILSDVDHSICVSHTCKENTVlRASLDPLMVSVIPN 181
                      46778.88*********964...31334555669999**************99887655257799999999998 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   2.7e-07    0.0007      11     138 ..      24     157 ..      14     158 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.7e-07
  Glyco_trans_4_2  11 vhtlrlakeLakrgyeVhvitp.kkgakdele.aegihvhrlkvd...rkgpleyl.kaf.klkklikkikPDvvhahyakpy.gllgslaarl 96 
                       h ++l ++L +rg++V +it  ++++k++    +g++v+ ++     r+ ++ ++ + f  l+ ++ ++ + +vh h   +     g l ar 
       CCE30107.1  24 SHIYQLSSKLIDRGHKVIIITHsHDDRKGVRYlTNGLKVYHVPFLviyRQATFPTVfSFFpILRYIFIRERIEIVHGHGSLSClCHEGILHART 117
                      5889999**************97777766655478999999975555466688887367856699999***********988835556677888 PP

  Glyco_trans_4_2  97 sgvipvvlsvwGldvlkfpkksk.lkklllklalkkatkvist 138
                       g  ++v++ +  + + f++++  l  +llk+ l+ ++ +i+ 
       CCE30107.1 118 MG-LRTVFTDH--SLFGFADAASiLTNKLLKFILSDVDHSICV 157
                      88.9*******..457777777758888******999999876 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.9   9.9e+03      25      51 ..     112     137 ..     107     141 .. 0.76
   2 !   15.4   0.0   7.1e-06     0.018       1      87 [.     294     380 ..     294     384 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.9
  Glyco_trans_1_2  25 altddaegleelftpgkevilfedlee 51 
                      +l  ++ gl+  ft+  +++ f+d ++
       CCE30107.1 112 ILHARTMGLRTVFTDH-SLFGFADAAS 137
                      5677889999999876.8888888765 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 7.1e-06
  Glyco_trans_1_2   1 ivLnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhra 87 
                      i+L+ps  e + ++++Eaa cG  +++++  g++e +     + +f+  ++++l+ +  ++++     + + e+ +e+v++ +++ + a
       CCE30107.1 294 IYLHPSLTEAFGTVIVEAASCGLYVVCTQVGGIPEVLPSH--MTTFAkpEEDDLVLATCKAITAVRAGKVRTEKFHEQVKKMYSWSNVA 380
                      789*********************************9665..66666568888888888888877777777888888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3649.62
//
Query:       CCE30108.1  [L=1096]
Description: related to tpa inducible protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-05   23.1   0.0    0.00024   21.1   0.0    2.0  1  Bromodomain  Bromodomain
  ------ inclusion threshold ------
       0.86    7.8   4.4        1.5    7.0   4.4    1.3  1  RAP1         Rhoptry-associated protein 1 (RAP-1)
          3    6.1   7.0          5    5.4   7.0    1.2  1  DUF515       Protein of unknown function (DUF515)


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     4e-08   0.00024       4      73 ..     870     972 ..     867     977 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 4e-08
                  HHHHBHTTTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SS.................................HHHHHHHHHHHHHHH CS
  Bromodomain   4 ilsellehklaepFlepvdpeefpdyyavikkPldLstIkkklesnkYks.................................ladfeadlkllfsNa 68 
                  +l+++ +h +a +F   v ++  p+y +++ +P d++ I++ +++++                                     a++e +l  +f Na
   CCE30108.1 870 ALDQISSHRDANMFATGVRERDAPNYRQIVLQPQDITSIRSAIKQGNKAAlqaasalpggdpgtasvwlpmsedlvppraiinSAQLERELVHMFCNA 967
                  689**************************************997766555567889999999999999999999999999999999999999999999 PP

                  HHHSH CS
  Bromodomain  69 rkyng 73 
                  ++yn+
   CCE30108.1 968 IMYNP 972
                  99998 PP

>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.4   0.00025       1.5     130     202 ..      73     145 ..      42     212 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00025
        RAP1 130 ktskpkststesl.ksssdskskasaksnvksaskyGesssseesatdsskasasvagivGadeeeppapkntl 202
                  t++ ++t t +l +s s+  s++++ s+  +as  G s+s+  sa  s+++sa  a+   +   + pa ++  
  CCE30108.1  73 ETGQAETTATAGLlESGSELASESASTSAQAAASTSG-SASASASASASASTSAQAAASAPTSTLASPASRQNK 145
                 5777777888876145555555555555555555554.555566777778888877777777777777766544 PP

>> DUF515  Protein of unknown function (DUF515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   7.0   0.00084         5     312     379 ..      90     156 ..      78     208 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.00084
      DUF515 312 SEsqsqsssvseesstsssessstsespGdvsisdsssasdsssvsqstseslsssisYsvNLaeiLk 379
                 SE  s s+s+s ++  s+s s s+s s   +s s s +a  s  +s  +s ++    + s+ L+ +L+
  CCE30108.1  90 SELASESASTSAQAAASTSGSASASAS-ASASASTSAQAAASAPTSTLASPASRQNKTGSLPLPSLLR 156
                 232233333333333333333222222.1233334444444444444445555555666677777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1096 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1833  (0.102237); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.59u 0.36s 00:00:01.95 Elapsed: 00:00:00.62
# Mc/sec: 5359.39
//
Query:       CCE30109.1  [L=1021]
Description: uncharacterized protein CPUR_03957 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-13   49.3  13.5     0.0032   18.3   0.0    8.3  8  WD40         WD domain, G-beta repeat
    0.00047   20.4   0.3         11    6.5   0.0    5.1  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
        1.6    9.4  12.8        5.9    7.5   0.0    5.9  7  PQQ_3        PQQ-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0031        19      14      28 ..     156     170 ..     141     181 .. 0.86
   2 !   18.3   0.0   5.3e-07    0.0032       4      38 .]     192     229 ..     190     229 .. 0.83
   3 ?    0.3   0.0      0.26   1.6e+03      13      36 ..     505     531 ..     494     533 .. 0.80
   4 !    8.7   0.2   0.00055       3.3       2      35 ..     538     574 ..     537     577 .. 0.75
   5 ?   -0.2   0.0      0.36   2.2e+03      21      37 ..     604     619 ..     585     620 .. 0.73
   6 ?   -2.1   0.0       1.5   8.9e+03      15      37 ..     647     669 ..     639     670 .. 0.79
   7 ?    3.5   0.0     0.025   1.5e+02      19      38 .]     703     723 ..     680     723 .. 0.77
   8 !   11.6   0.1   6.8e-05      0.41       9      37 ..     735     767 ..     730     767 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0031
                 EEEEEETTSSEEEEE CS
        WD40  14 tslafspdgawlasG 28 
                 t+la spdg++la G
  CCE30109.1 156 TCLALSPDGRFLAVG 170
                 9***********987 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 5.3e-07
                 EEEEESS.SSEEEEEEETTSSEEEE.E.ETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlas.G.sdDgtvriWd 38 
                 l +++ H ++vt++a+s d+++las G   Dg + +W+
  CCE30109.1 192 LVSISEHaFGVTAVAWSADSKYLASlGaANDGYLFVWK 229
                 556789*888*************9763246*******6 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.26
                 EEEEE...EETTSSEEEEEETTSEEEE CS
        WD40  13 vtsla...fspdgawlasGsdDgtvri 36 
                 v+ la   + ++g++++++++ g vr+
  CCE30109.1 505 VNQLAsarVTRSGQLVVTADRQGVVRV 531
                 6666666688999******99***998 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00055
                 EEEEEEESS.SSEEEEE.EETTSSEEE.EEETTSEEE CS
        WD40   2 qclrtltGH.ssvtsla.fspdgawla.sGsdDgtvr 35 
                 +cl  +++H ++  +++  + d+++l+ ++++D+t  
  CCE30109.1 538 DCLLDIKAHnGHCLCISvHDEDSKFLMaCCGRDRTAQ 574
                 68888899955566777899999998626689**975 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.36
                 TSSEEEEEETTSEEEEE CS
        WD40  21 dgawlasGsdDgtvriW 37 
                 d +  +++s D+t+ i 
  CCE30109.1 604 DDKI-ITCSLDRTLQIH 619
                 4444.57999**99885 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 1.5
                 EEEEETTSSEEEEEETTSEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriW 37 
                 s+a spd++ ++ +  D++v  +
  CCE30109.1 647 SMAMSPDHRTVFVSLLDRSVCHF 669
                 67889999999887669998755 PP

  == domain 7  score: 3.5 bits;  conditional E-value: 0.025
                 ETTSSEEEEEE..TTSEEEEEE CS
        WD40  19 spdgawlasGs..dDgtvriWd 38 
                 s+d  +l+ Gs   D+++r++d
  CCE30109.1 703 SKDLEFLL-GSsnTDKSIRLYD 723
                 55667888.54235******98 PP

  == domain 8  score: 11.6 bits;  conditional E-value: 6.8e-05
                 SS.SSEEEEE....EETTSSE....EEEEETTSEEEEE CS
        WD40   9 GH.ssvtsla....fspdgaw....lasGsdDgtvriW 37 
                 GH   +++++     +         ++ Gs Dgt++iW
  CCE30109.1 735 GHtEAINGISfvedED----GskkvVSVGS-DGTIMIW 767
                 8966699997543333....3445366789.******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0026        16      30      89 ..     146     207 ..     141     210 .. 0.61
   2 ?    1.5   0.0     0.062   3.7e+02      38      59 ..     199     220 ..     187     257 .. 0.74
   3 ?   -1.8   0.0      0.64   3.8e+03      49      81 ..     322     354 ..     320     365 .. 0.75
   4 !    6.5   0.0    0.0018        11      47      87 ..     514     553 ..     497     588 .. 0.87
   5 ?   -1.8   0.0      0.64   3.8e+03      52      74 ..     709     731 ..     703     747 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0026
  ANAPC4_WD40  30 wtleedkedsevrsLaWkpdgklLavaysdg.....evrlldaesgkvvhslsvksekavtclgW 89 
                  wt    ++ +  ++La +pdg++Lav+           +llda+s   + s+s ++   vt + W
   CCE30109.1 146 WTS--RERIKAATCLALSPDGRFLAVGETGYaprvlIFSLLDASSDVPLVSISEHAF-GVTAVAW 207
                  555..56677889*************9654322111234455555555555555555.3666666 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.062
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysd 59 
                     v+++aW+ d k La   + 
   CCE30109.1 199 AFGVTAVAWSADSKYLASLGAA 220
                  55799***********985443 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.64
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  dgk L+  ++ g v +ld  + ++  ++  + +
   CCE30109.1 322 DGKRLMLCTEAGDVCILDDDDRQMKLTSVLNLD 354
                  8999************99888877655555555 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0018
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                    +g+l + a  +g vr+ld+ s++++  +++++ +   c+
   CCE30109.1 514 TRSGQLVVTADRQGVVRVLDVDSEDCLLDIKAHNGH-CLCI 553
                  568999999999**************9999999985.5555 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 0.64
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvh 74 
                  lL  +  d ++rl+da+ g  + 
   CCE30109.1 709 LLGSSNTDKSIRLYDASAGMFLD 731
                  677788999*******9997765 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.1   1.2e+04      18      34 ..      65      81 ..      54      82 .. 0.64
   2 ?   -1.5   0.2      0.69   4.1e+03       5      26 ..     207     227 ..     204     228 .. 0.69
   3 ?    0.5   0.1      0.15   9.2e+02      15      38 ..     317     340 ..     307     342 .. 0.83
   4 ?    7.5   0.0   0.00099       5.9      15      39 ..     358     382 ..     353     383 .. 0.89
   5 ?    4.3   0.1      0.01        60      17      40 .]     513     536 ..     499     536 .. 0.84
   6 ?   -1.8   0.0      0.85   5.1e+03      15      37 ..     646     670 ..     641     673 .. 0.68
   7 ?   -0.9   0.0      0.43   2.6e+03       4      18 ..     766     780 ..     765     787 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.1
       PQQ_3 18 avdgglvyvgtgdGtly 34
                 ++g    v++  G+ly
  CCE30109.1 65 YIAGAAAIVVDVEGHLY 81
                33666666777778887 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.69
       PQQ_3   5 Wsvqlpgpvnssp.avdgglvyv 26 
                 Ws +  +++ +s+ a+ +g+++v
  CCE30109.1 207 WSAD--SKYLASLgAANDGYLFV 227
                 6655..44446667999****98 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.15
       PQQ_3  15 sspavdgglvyvgtgdGtlyAlDa 38 
                 s +avdg ++   t+ G ++ lD 
  CCE30109.1 317 SCAAVDGKRLMLCTEAGDVCILDD 340
                 5569***************99995 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.00099
       PQQ_3  15 sspavdgglvyvgtgdGtlyAlDae 39 
                 +s ++ g++ yvg+ dG l  lD e
  CCE30109.1 358 TSITIRGNIAYVGGRDGQLATLDVE 382
                 678999*************999975 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.01
       PQQ_3  17 pavdgglvyvgtgdGtlyAlDaet 40 
                 ++ +g lv++++ +G ++ lD ++
  CCE30109.1 513 VTRSGQLVVTADRQGVVRVLDVDS 536
                 4779*****************875 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 0.85
       PQQ_3  15 sspavd..gglvyvgtgdGtlyAlD 37 
                 ss+a++   ++v+v+  d +++ +D
  CCE30109.1 646 SSMAMSpdHRTVFVSLLDRSVCHFD 670
                 67777522678**998887776555 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 0.43
       PQQ_3   4 lWsvqlpgpvnsspa 18 
                 +W+ +l++p +ss+ 
  CCE30109.1 766 IWALDLDDPSTSSMS 780
                 7********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 6944.16
//
Query:       CCE30110.1  [L=48]
Description: uncharacterized protein CPUR_03958 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 369.37
//
Query:       CCE30111.1  [L=910]
Description: uncharacterized protein CPUR_03959 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.9e-152  508.3   0.0   3.1e-152  507.6   0.0    1.3  1  Rgp1        Rgp1
     0.0079   16.7   0.1      0.085   13.3   0.0    2.6  4  Arrestin_C  Arrestin (or S-antigen), C-terminal domain
  ------ inclusion threshold ------
       0.11   12.5   0.3       0.54   10.3   0.0    2.2  3  Arrestin_N  Arrestin (or S-antigen), N-terminal domain


Domain annotation for each model (and alignments):
>> Rgp1  Rgp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  507.6   0.0  5.2e-156  3.1e-152       1     416 [.     429     830 ..     429     831 .. 0.92

  Alignments for each domain:
  == domain 1  score: 507.6 bits;  conditional E-value: 5.2e-156
        Rgp1   1 tLlmgYvQisGsftlDgslineskfeevkrkavvggs.ggvvglekskrssgllgglgwgsiseslgellggnelstlkemresaesksiPllstpqsl 98 
                 +L+mgY+Qi+G ftlDgsl++ ++fe+vk+k++vgg+ ggv+g+e +kr+sgll+glgwg is+slg+llgg+elstlkemr+sa+s+s+Pllstpqs+
  CCE30111.1 429 SLMMGYAQIQGNFTLDGSLVSLGPFEQVKQKGAVGGRgGGVIGVEPTKRESGLLRGLGWGTISNSLGDLLGGGELSTLKEMRGSANSRSVPLLSTPQSI 527
                 69*********************************777************************************************************* PP

        Rgp1  99 LfvdLtLaPGEsksFefsfkLPkdLpPsyrgkaikisYsLviGtqrpggak.qqvksvevPirvlpsvnssgeqlghdLmspyillrdearvkevksrk 196
                 LfvdL+La GEs+s+e+sf LPk+LpP++rgk+ikisY+LviGtqr gga+ qqv+sve+P+rvl+svns+ge+lghdLm+pyillrd+a v+++    
  CCE30111.1 528 LFVDLQLASGESQSYEYSFCLPKGLPPTHRGKTIKISYKLVIGTQRAGGAReQQVRSVEIPFRVLGSVNSHGEILGHDLMNPYILLRDTAVVNSLG--- 623
                 ***********************************************99999********************************************... PP

        Rgp1 197 kssssskekkkskskkkseksesskedFlkyveelleneseskdieellspqlevqfeeeedseeneesrrksvvskesssvkeaidllilrsqla... 292
                        +++k++++++s  +  ++++Fl+yv+ l +++++s+ + +llsp+ + + e          s+++ + ++  +++keai+l+i+rs+++   
  CCE30111.1 624 -------RRPKAHKPRASFGRPATMDEFLTYVDGLSTRRDSST-AMALLSPTETPT-E--RR------SSSPTTSHEAVTTAKEAIHLAIMRSNMSsdg 705
                 .......223334444555555679********9888887775.699999998653.1..11......2223344557788***************988 PP

        Rgp1 293 ...snlqks...yeIarngkrvAvltLskpaYrlgetitlvidfsdaeklkvyavtatLesfEkidpslalrseasikrvtrkvvaesseitlfarerv 385
                    ++   s   +eI+rng+rv+v++L++paYrlge +t++idfsda ++ +yav+atLe++Ek+d s+a+rseas++rvtrkv+++sse+++++r rv
  CCE30111.1 706 qqpQH---SanrFEISRNGQRVGVVMLTRPAYRLGEIVTMAIDFSDA-DIACYAVHATLETCEKVDASVAVRSEASLQRVTRKVYVASSEAAMYSR-RV 799
                 54444...3555**********************************9.7***********************************************.** PP

        Rgp1 386 sfkltipksatpqFkTsgvqlkWllrleFvl 416
                 +f++tip satp+F+Ts ++l+W++r+eFv+
  CCE30111.1 800 VFTPTIPISATPEFVTSSISLEWKIRIEFVV 830
                 ******************************9 PP

>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.3   1.4e+04      14      30 ..      76      92 ..      71      99 .. 0.80
   2 ?   -3.5   0.0       2.2   1.3e+04      66      89 ..     208     237 ..     190     260 .. 0.65
   3 !   13.3   0.0   1.4e-05     0.085      72     129 ..     535     591 ..     505     596 .. 0.74
   4 ?   -0.9   0.0      0.34     2e+03      15     116 ..     733     832 ..     727     849 .. 0.44

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.3
                SEEETT--EEEEEEEEE CS
  Arrestin_C 14 kgyvpGetipvtvkidn 30
                + ++ Ge+++ tv+++n
  CCE30111.1 76 QTVFAGEEVKCTVTFKN 92
                56788999999999987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.2
                 EEE---B-TTEE.EEEEEEE.--......- CS
  Arrestin_C  66 sdsvkvtsaakdkletevelqiP......e 89 
                 s++++ ++ ++++ +  ++lqiP      +
  CCE30111.1 208 SEPPSRSQRPQRSHNRAASLQIPlqglasA 237
                 555555778888889999999996444430 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 1.4e-05
                 B-TTEE.EEEEEEE.----B-----S---EEEEEEEEEEEEEEE.S..SEEEEEEEEEEEE CS
  Arrestin_C  72 tsaakdkletevelqiPeeltpssarnvelikvsYklkvkltls.g..sggelslelPivl 129
                 +s++++++e  +++ +P+ l+p+    ++ ik+sYkl +  +   g   ++  s+e+P+ +
  CCE30111.1 535 ASGESQSYE--YSFCLPKGLPPTH--RGKTIKISYKLVIGTQRAgGarEQQVRSVEIPFRV 591
                 556666666..***********99..8**********998876642434445567777765 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.34
                 EEETT--EEEEEEEEE-SSSEEEEEEEEEE..EEEEEESS..SEEEEEEEEEEEEE---B-TTEE.EEEEEEE.----B-----S---EEEEEEEEEEE CS
  Arrestin_C  15 gyvpGetipvtvkidndskkkvkkikvslv..qhvdvcafnrsnkkeknvvaksdsvkvtsaakdkletevelqiPeeltpssarnvelikvsYklkvk 111
                 +y  Ge +++ +++  d    ++ + ++l+  ++vd     rs+ + ++v +k ++v  ++aa  +    ++ +iP ++tp     ++ i+ + k++++
  CCE30111.1 733 AYRLGEIVTMAIDFS-DADIACYAVHATLEtcEKVDASVAVRSEASLQRVTRK-VYVASSEAAMYSRRVVFTPTIPISATPEF--VTSSISLEWKIRIE 827
                 666677666666654.3333333333333200222222222222222222222.22222122222222223335555555555..56666666666666 PP

                 EEEES CS
  Arrestin_C 112 ltlsg 116
                 + + +
  CCE30111.1 828 FVVPH 832
                 66665 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       2.4   1.4e+04       9      33 ..      75      99 ..      69     102 .. 0.74
   2 ?   10.3   0.0     9e-05      0.54      87     126 ..     534     574 ..     525     592 .. 0.79
   3 ?   -2.3   0.0       0.7   4.2e+03      96     132 ..     801     837 ..     796     849 .. 0.82

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.4
                EEEEETT--EEEEEEE-CCCCTT.C CS
  Arrestin_N  9 devyhpgetvdGkvlleteelkkar 33
                d++ ++ge+v+ +v++++  + ++r
  CCE30111.1 75 DQTVFAGEEVKCTVTFKNVAATTNR 99
                6667889999999988887766665 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 9e-05
                 HHH-T.TEEEEEE---TTS--SECSGEEEEEEEEEEEEECC CS
  Arrestin_N  87 LpkGe.hafpFsfelPknlpsSfeGkaggvrYevkvtldrp 126
                 L +Ge   + +sf lPk lp+++ Gk  ++ Y++ +  +r+
  CCE30111.1 534 LASGEsQSYEYSFCLPKGLPPTHRGKTIKISYKLVIGTQRA 574
                 5556524699999*******************987666665 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.7
                 EEE---TTS--SECSGEEEEEEEEEEEEECCCE--C. CS
  Arrestin_N  96 FsfelPknlpsSfeGkaggvrYevkvtldrpwkidkk 132
                 F+ ++P+++ + f  +  + ++++++++  p + +++
  CCE30111.1 801 FTPTIPISATPEFVTSSISLEWKIRIEFVVPHQGNED 837
                 88999********999999999999999888865554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (910 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 6547.84
//
Query:       CCE30112.1  [L=322]
Description: uncharacterized protein CPUR_03960 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.02   15.3   0.4        7.7    7.0   0.0    2.3  2  Inhibitor_I69  Spi protease inhibitor


Domain annotation for each model (and alignments):
>> Inhibitor_I69  Spi protease inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0   0.00043       7.7       4      52 ..     178     225 ..     176     232 .. 0.69
   2 ?    6.3   0.1   0.00071        13       4      34 ..     255     285 ..     252     301 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00043
  Inhibitor_I69   4 vseeeAlkiAekffaqngaktaasaasqsslsseattsasasepayYVf 52 
                    +s++eAl iAek+++ ++ +++ + ++ + ++ + +++++ +++++ V+
     CCE30112.1 178 RSQDEALTIAEKAMKGKELSHGTTYSRGE-TRLNIRSRSARDRELLAVY 225
                    799**************999996655443.3555555555555555544 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.00071
  Inhibitor_I69   4 vseeeAlkiAekffaqngaktaasaasqssl 34 
                     +e+eA+++Ae++++ ++  + +s  ++ s+
     CCE30112.1 255 MTEDEARSLAEQYLRLKREPQVKSEDKKPSI 285
                    689*************999888766554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 2084.58
//
Query:       CCE30113.1  [L=497]
Description: probable aldehyde dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.3e-183  609.4   0.2   3.7e-183  609.3   0.2    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.028   13.9   0.0        3.9    6.9   0.0    2.4  2  DUF1487   Protein of unknown function (DUF1487)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  609.3   0.2  4.1e-187  3.7e-183       1     462 []      27     487 ..      27     487 .. 0.99

  Alignments for each domain:
  == domain 1  score: 609.3 bits;  conditional E-value: 4.1e-187
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH.HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafk.awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvl 97 
                 wve+ + +++evinP+t+evi++v +at++dvd avaaA++af+  w++++++ R+ +L+k+ad++e++ + la++e+l++Gk+++ a+a+v  ++ ++
  CCE30113.1  27 WVEGVDkKKFEVINPTTEEVITSVCEATEKDVDIAVAAARKAFEtVWKEVTPQARSYMLMKLADIVEKNVDILAAVESLDNGKSISMAKADVGAVAGCI 125
                 899999556***********************************77***************************************************** PP

                 HHHHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCH CS
      Aldedh  98 ryyaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsev 196
                 ryy ++a+k+eg+++ ++++++ ++r ePlGv+g+I+PWNfPll++awk+ pala+GNt++lK ae+tpls l++a+l++eag+P+gv+n+++g g+ +
  CCE30113.1 126 RYYGGWADKIEGKTIDIAPDMFHYTRPEPLGVCGQIIPWNFPLLMLAWKIGPALATGNTIILKTAEQTPLSGLVFANLVKEAGFPPGVFNLLSGFGKVA 224
                 *****************9********************************************************************************* PP

                 HHHHHH-TTESEEEEES-HHHHHHHHHH.HHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHH CS
      Aldedh 197 gealvehpevdkvsftGstevgrkiaka.aaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaak 294
                 g+a+ +h ++dkv+ftGst vgr i+ka a++nlk+vtlElGGk+p+iv++daD+++a++++ +g+++n GQ C+a++r++vqe+iyd+f+e+++++a+
  CCE30113.1 225 GAAISSHMDIDKVAFTGSTIVGRTIMKAaASSNLKKVTLELGGKSPNIVFNDADIEQAISWVNFGIYFNHGQCCCAGTRIFVQEGIYDQFLEAFKKRAQ 323
                 ****************************666******************************************************************** PP

                 T--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSS CS
      Aldedh 295 klkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdt 393
                 k kvgdp++edt  GP++s+ q++++++y++++k+ega++ +Gg   e++ +kgyf++Pt+++nv++dm+i++eEiFGPV ++ kfkdeee+i++ N+t
  CCE30113.1 324 KNKVGDPFAEDTFQGPQVSQLQYDRIMSYIQSGKDEGATIEVGG---ERHGDKGYFIQPTIFSNVRSDMKIMKEEIFGPVCAISKFKDEEEVIRLSNET 419
                 ********************************************...7899************************************************ PP

                 SEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 394 eyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 +yGLaa+++tkdl++  rv ++l+aG+v++N+++  +++  pfgG+k+Sg+Gre g+++l +yt+ k+v
  CCE30113.1 420 PYGLAAAIHTKDLNTSIRVCNALKAGTVWVNCYNMLSHQL-PFGGFKESGIGRELGEAALANYTQNKSV 487
                 *************************************999.************************9987 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0023        21       9      56 ..     272     321 ..     268     327 .. 0.80
   2 ?    6.9   0.0   0.00043       3.9     116     171 ..     400     454 ..     379     460 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0023
     DUF1487   9 vifedgDlnsalealvesl..kePfaegavatvlveesirdefvervrsk 56 
                 ++f+d+D+++a+  +   +  ++   + a   ++v+e i d+f+e  +++
  CCE30113.1 272 IVFNDADIEQAISWVNFGIyfNHGQCCCAGTRIFVQEGIYDQFLEAFKKR 321
                 79**********98876541156666777789***********9988876 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00043
     DUF1487 116 vvTlhtFrnakEvvkllakeslkfasvsvwneklaavyelvarlnvdvftiNCakv 171
                 v  ++ F+  +Ev++l+++ +  +a  +++ + l +   + ++l+  ++ +NC+++
  CCE30113.1 400 VCAISKFKDEEEVIRLSNETPYGLA-AAIHTKDLNTSIRVCNALKAGTVWVNCYNM 454
                 678899**********987666665.689************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3631.33
//
Query:       CCE30114.1  [L=207]
Description: uncharacterized protein CPUR_03962 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.51   10.4  10.1       0.82    9.7  10.1    1.3  1  Mito_fiss_reg   Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  10.1   4.6e-05      0.82     155     219 ..      27     119 ..      12     132 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 4.6e-05
  Mito_fiss_reg 155 sdtpdllepksssaspslepsss...lpp...ppppppppi.......................ppespsvldssnsaielikqrrgakktsse 219
                    +++p++++p++s +sp+ +psss     p   ppppp pp+                        + ++sv++++ ++i+l  +++++k++s++
     CCE30114.1  27 QTNPEFSSPRRSRPSPQPQPSSSpspN-PhtkPPPPPWPPLrhnptpsasrvrdheghehssppVNLATSVIKHNPKVIDLTTNTKDSKHHSRH 119
                    467788888888888877776654331.222233333444256667778888886665555555444566666666666666666664444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1658.94
//
Query:       CCE30115.1  [L=348]
Description: uncharacterized protein CPUR_03963 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0062   16.4   0.4      0.014   15.3   0.4    1.6  1  Lactamase_B_3  Beta-lactamase superfamily domain
     0.0074   15.8   0.1      0.012   15.1   0.1    1.3  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.4   1.5e-06     0.014      19      86 ..      54     170 ..      25     184 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-06
  Lactamase_B_3  19 ilvDPf.................................kanlgyeppa......................eeaDlvlisqaledHahletlkqla 59 
                    +++DP+                                 +        +                        +D++l+s +  dH h +tl+  +
     CCE30115.1  54 VVLDPWlvgptellgswfihidlpsspalptaaavetaaR--------QiedlasehvlkrrmsnevfnpsSYIDAILLSFHYYDHVHEATLRDFN 141
                    5666665555555544444444444444444433333330........0333333334444444444444499**********************9 PP

  Lactamase_B_3  60 envkvleegeslev.g.gleiravatshd 86 
                     +v+v+++ +++++ +    +r+va  hd
     CCE30115.1 142 VRVPVIATRQAANIvKpWNHFRNVAVVHD 170
                    99999999999886242345666666665 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.4e-06     0.012      30      81 ..     118     167 ..      97     187 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.4e-06
                    SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHT CS
  Lactamase_B_2  30 pidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylalee 81 
                     ida+ll+   yDH++   tlr +  + +p++a+++ + +++ + ++ +  +
     CCE30115.1 118 YIDAILLSFHYYDHVHE-ATLRDFNVR-VPVIATRQAANIVKPWNHFRNVAV 167
                    69*************85.9****9874.****************87765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2494.64
//
Query:       CCE30116.1  [L=574]
Description: related to peptidylprolyl isomerase (cyclophilin)-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-41  139.7   0.1    3.8e-40  137.7   0.0    2.0  2  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
     0.0003   21.2   0.2     0.0003   21.2   0.2    4.1  2  DUF4604        Domain of unknown function (DUF4604)
  ------ inclusion threshold ------
          1    9.9   0.0          1    9.9   0.0    3.0  4  PRA-PH         Phosphoribosyl-ATP pyrophosphohydrolase


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.0   6.3e-44   3.8e-40       4     157 ..      17     192 ..      14     193 .. 0.85
   2 ?   -1.4   0.1      0.42   2.5e+03      49      82 ..     257     288 ..     252     308 .. 0.57

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 6.3e-44
  Pro_isomerase   4 ietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgkts....................ageqekkggesi...... 73 
                    i+t  +G+i +eLfa+++P t++nFl++  +g+Ydgt+FhR++++f++qgGdptg+++                    +          +      
     CCE30116.1  17 IHTT-LGEILVELFAKQTPLTCRNFLQHSLDGYYDGTIFHRLVPNFILQGGDPTGTGNggeciydggafsgdldpwpmD----------Errgmna 101
                    7885.**************************************************988777777777777666666652..........0233333 PP

  Pro_isomerase  74 ....raipdEit.sklkhkrGalamartgkepnsagsqFfItlkeaphldgkytvFGkVv.eGmdvvekiekvetde..erpkknvkivsae 157
                          ++dE++ +  +++rG+l+ma++ + +n++gsqFf+tl+++++l+gk+t FG+V  + +  + ki + e+d+   rp  +v+i+++e
     CCE30116.1 102 gptgIHFKDEFHsRLKFNRRGLLGMANE-SRENTNGSQFFFTLDKTEELNGKNTLFGRVAgDTIFNLAKIGESEVDAdsGRPLYPVRIERVE 192
                    3333799*****55555699*******9.68*****************************99999*******98888889********9987 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.42
  Pro_isomerase  49 fmvqgGdptgktsageqekkggesiraipdEits 82 
                     +vq  d ++ +  ++  k + ++++++p E ++
     CCE30116.1 257 LVVQEDDQEEAEHSNK--KPTTKKKQKVPLEAKK 288
                    5788888655544232..2222244688888842 PP

>> DUF4604  Domain of unknown function (DUF4604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   5.1e-08    0.0003     137     173 .]     202     238 ..     129     238 .. 0.79
   2 ?  -27.5  41.9         3   1.8e+04      80     137 ..     266     360 ..     240     571 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.1e-08
     DUF4604 137 kskakkkekekkkakkkkkkkkkkkkkkklLSFgdde 173
                 k++ +   ++++ka++++k+kkk k  k lLSFgdde
  CCE30116.1 202 KKRSRVAIHTTQKAASTTKPKKKRKGGKQLLSFGDDE 238
                 4444445678999***********************8 PP

  == domain 2  score: -27.5 bits;  conditional E-value: 3
     DUF4604  80 eeeeeeeeegeeaeed..........iefkkpkkasikeka.......sslaaksskkkkk.gkvvgeedeeeed........................ 136
                 e+e ++++++ +++++          i++++++       +       ++ + +   + k  g++ + ++++ee                         
  CCE30116.1 266 EAEHSNKKPTTKKKQKvpleakkteaISTAAET-------KktpsrsaVDKSES--PQDKLrGRGRSRQKTTEEPeespcrpespipektalekaneei 355
                 111111111111111122211111111111111.......11222211111111..1111123333333332222556666666666666666665555 PP

     DUF4604 137 ....k 137
                     +
  CCE30116.1 356 aalkA 360
                 54441 PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         3   1.8e+04      27      43 ..      17      33 ..      10      46 .. 0.70
   2 ?   -2.9   0.7       1.6   9.6e+03      16      35 ..     271     291 ..     259     309 .. 0.62
   3 ?   -1.7   1.7      0.67     4e+03      10      45 ..     325     361 ..     323     387 .. 0.68
   4 ?    9.9   0.0   0.00017         1       6      60 ..     415     470 ..     412     475 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3
                HHHHHHHHHHHHHHHT- CS
      PRA-PH 27 raaligEEavElleaas 43
                + + +gE +vEl +   
  CCE30116.1 17 IHTTLGEILVELFAKQT 33
                56778888888877655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.6
                 ----.-HHHHHHHHHHHHHHH CS
      PRA-PH  16 Peas.taelaslraaligEEa 35 
                  +++ t+++++ +++++++Ea
  CCE30116.1 271 NKKPtTKKKQKVPLEAKKTEA 291
                 334435555555777777776 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.67
                 ----SS-----HHHHHH.HHHHHHHHHHHHHHHT-SC CS
      PRA-PH  10 erkpetPeastaelasl.raaligEEavElleaaseg 45 
                 +++ e+Pe+s+ + +s  + +   E a E ++a +++
  CCE30116.1 325 QKTTEEPEESPCRPESPiPEKTALEKANEEIAALKAS 361
                 5677888888888888843333345566666666554 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00017
                 HHCT----SS----.-HHHHHHHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHH CS
      PRA-PH   6 rligerkpetPeas.taelaslraaligEEavElleaasegdlaeladelaDllYv 60 
                 r+++ + ++ P ++ ++   s+++a +g E +E +eaa++    e   +l+Dl ++
  CCE30116.1 415 RAFQSKLEKVPPKPaPPGSTSKPDAEKGSEGTEAVEAAEATAEGEEEAALCDLHFI 470
                 789999999888888*************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1310  (0.073066); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 4011.86
//
Query:       CCE30117.1  [L=763]
Description: related to heat shock transcription factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-27   96.5   1.5    2.4e-27   95.4   1.5    1.6  1  HSF_DNA-bind  HSF-type DNA-binding
  ------ inclusion threshold ------
      0.043   14.3   0.0      0.096   13.2   0.0    1.5  1  Ets           Ets-domain


Domain annotation for each model (and alignments):
>> HSF_DNA-bind  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   1.5   2.6e-31   2.4e-27       1      94 [.     151     252 ..     151     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 2.6e-31
                   HHHHHHHHHCT...TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE.....---SSB....TTB--TTSEEEEESS--XX CS
  HSF_DNA-bind   1 FlkkLyklled...eelisWsedgksfvvkdkeefakevlpkyfkhsnfssFvrqLnlYgFrk.....vkrkee....kkkkkskvweFshenFkrg 85 
                   F++kL ++le+   e++i+Wse+g+sf v d++efak+++p++fkh+n++sFvrqLn+YgF+k          +    +++k+++ +e+++++F+rg
    CCE30117.1 151 FVQKLSSFLEEpknEHFIRWSEKGDSFFVLDEDEFAKRLIPELFKHNNYASFVRQLNMYGFHKrvglsD----NsmraSERKNKSPSEYHNPFFRRG 243
                   9********87677999**********************************************776442....13344666666777********** PP

                   XXXXXXXXX CS
  HSF_DNA-bind  86 kpelLkkik 94 
                   +p+lL  i+
    CCE30117.1 244 HPNLLWLIN 252
                   *****9886 PP

>> Ets  Ets-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.096       6      59 ..     155     206 ..     151     217 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
         Ets   6 llelLedpskssiiaWtdkeegeFklvdpeevarlWgkrknkpkmnyeklsral 59 
                 l + Le+p+++++i+W +k + +F ++d++e+a++   +   ++ ny ++ r+l
  CCE30117.1 155 LSSFLEEPKNEHFIRWSEK-GDSFFVLDEDEFAKRLIPELF-KHNNYASFVRQL 206
                 5678*************88.999999999999987544432.233555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1200  (0.0669307); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.39
# Mc/sec: 5934.67
//
Query:       CCE30118.1  [L=166]
Description: probable peptidylprolyl isomerase (cyclophilin)-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-45  153.1   0.0    8.4e-45  152.9   0.0    1.0  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.0   4.7e-49   8.4e-45       2     158 .]       3     159 ..       2     159 .. 0.92

  Alignments for each domain:
  == domain 1  score: 152.9 bits;  conditional E-value: 4.7e-49
  Pro_isomerase   2 vdietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesi..raipdEitsklkh.krGalama 94 
                    v+++t  +G+i+ie+f +++Pk++enFl+l+ + +Y+ + FhR+i++fm+q+G p + t++++   k+g+si   +++dEi+++l+h +rG+++ma
     CCE30118.1   3 VTLHTT-LGDIKIEVFCESVPKAAENFLALCASDYYNSSPFHRLIPKFMIQTGMPASPTPDNP---KSGQSIwgGTFDDEIRPSLRHtQRGVVSMA 94 
                    789995.**************************************************988554...2333445579******999999******** PP

  Pro_isomerase  95 rtgkepnsagsqFfItlkeaphldgkytvFGkVv..eGmdvvekiekvetde.erpkknvkivsaev 158
                    ++g  p ++gsqFfIt+++aphldg+ tv GkV+  +++ v+ k+e+ve+d+ +rp+++++i++++v
     CCE30118.1  95 NKG--PGTNGSQFFITFDKAPHLDGSSTVLGKVIgdDSLVVLAKMEAVEVDKkHRPVEKIRIERVTV 159
                    *97..8********************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1228.57
//
Query:       CCE30119.1  [L=374]
Description: uncharacterized protein CPUR_03967 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-21   75.9   4.2    3.5e-19   69.3   0.1    2.1  2  ORC6      Origin recognition complex subunit 6 (ORC6)


Domain annotation for each model (and alignments):
>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.1     2e-23   3.5e-19       1     191 [.       9     195 ..       9     209 .. 0.79
   2 !    7.9   0.7   8.8e-05       1.6     296     356 ..     276     344 ..     265     345 .. 0.79

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 2e-23
        ORC6   1 LsdllpthsgglpkkllslassLynlSlskkvvlkneeEiARchiCaelAaekLkekldlpysvkkiPlppkaykklldlfrqsLsnsssatstPsksp 99 
                 L +l+pt++++lp+ l+ la sL+++S++++++lk++eEiAR+          Lk +ldlp+   ++P+pp+ y++l++ ++ +L n s  t   s++ 
  CCE30119.1   9 LLSLMPTYGSDLPPSLVELAGSLLAQSRHRASTLKADEEIARQ----------LKTSLDLPPIAPRPPIPPRIYNRLYAHLDAILPNAS--TTARSSRV 95 
                 5689*************************************95..........9***********************************..33344444 PP

        ORC6 100 sspst...........dpkslrkqlfsTPtKsktlktalsasksssplkrrrklaneedgeeeeed.apswvstsir..dsrpeisrtlspskslgdes 184
                 + ps+           + ++ +    +TPtK+ +l+++  +s+  s lk r     ++d + ++   +  w ++ ir  ++++++ + l p++++g e 
  CCE30119.1  96 RIPSRrirenadtmpiKSQPRAVPSRGTPTKEMSLAKFRVPSRAASALKAR-----KLDVQGSRHHrVHPWIQPVIRhmCAESGQKK-LAPTIFAGIEC 188
                 444446668888**998888888899************8878888888833.....3344444444456677777877544444333.47777777777 PP

        ORC6 185 ilfndss 191
                 +l +d++
  CCE30119.1 189 TLVPDGR 195
                 7666665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 8.8e-05
        ORC6 296 dvdewiklv..eewikgeeWfrei.......ekkydyfdgaeeeesqakeskareglGsMlqdrvdylSe 356
                 d d +++ v    w+   +W+  i        k ++   ++e+e+ +++ s  + +  +Mlq ++dylSe
  CCE30119.1 276 DFDAAVAKVneNKWLS-GDWYDGIvdvlcstDKADVDMLEVEQEQEERQASLPTRRADAMLQEQNDYLSE 344
                 5666666666566777.589*999999998767777777788888888888888***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2945.68
//
Query:       CCE30120.1  [L=354]
Description: uncharacterized protein CPUR_03968 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-11   44.3   0.0      2e-11   43.6   0.0    1.3  1  Dioxygenase_C  Dioxygenase


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   1.1e-15     2e-11       1      99 [.     126     222 ..     126     234 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 1.1e-15
                    ---S--EET--EEESEEE---S--TT--EEEEEEEEE-TT.SSB-TT-EEEEE---TTS--TTS-TTS-SS.TTTTE.EEEE--TTSEEEEEEE-- CS
  Dioxygenase_C   1 iegPlyveeapededlarledkgeeegerlvlsGrvldea.GkplagalvelWhanaeGrYshkkeeheap.elnlr.griltdeeGryrirtikP 93 
                    i gP+yv++     +++r e  ++e+g++++l  + +d +  + +++  v++Whana G Ys  + e +   + n+  g  +td++G  + r+i P
     CCE30120.1 126 IIGPYYVAG-----EYLREEISDNEPGVPIYLDFQFVDVKtCEAVPNLIVDMWHANALGVYSGVTAEGQGGlKTNFGrGVQITDDDGVVQYRSIFP 216
                    578999993.....445555556789************75279*******************9999987778999976999*************** PP

                    --EE-- CS
  Dioxygenase_C  94 apYpip 99 
                    + Y  +
     CCE30120.1 217 GHYIGR 222
                    **9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 1898.43
//
Query:       CCE30121.1  [L=368]
Description: related to levodione reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-57  193.6   2.5    4.4e-57  193.3   2.5    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.3e-51  174.9   1.3    1.5e-51  174.6   1.3    1.1  1  adh_short        short chain dehydrogenase
    7.2e-11   42.3   0.6    1.8e-10   41.0   0.6    1.7  1  KR               KR domain
    0.00061   19.3   0.2      0.001   18.6   0.2    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.031   13.4   0.0      0.042   13.0   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.077   13.4   0.2        0.2   12.1   0.2    1.7  1  Ribosomal_S11    Ribosomal protein S11


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.3   2.5   1.5e-60   4.4e-57       4     234 .]     112     357 ..     107     357 .. 0.94

  Alignments for each domain:
  == domain 1  score: 193.3 bits;  conditional E-value: 1.5e-60
                   TSHHHHHHHHHHHTT-E.EEEEESSGGH.HHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGae.vvltdlneea.kkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                    gIGra+A+++ae+Ga+ + ++d+++++ +++ +e+++++++  v   + D++de++v+a+v+++ e++g+lD+++ nagi+   ++ f+e++ ++f
    CCE30121.1 112 LGIGRATAHQFAENGAKaIYICDYDDSNlAAHQHEIEAAYPHVdVhpWQFDAADEDKVKAVVDDALERYGQLDVFFANAGITGI-NTVFTEFTSADF 207
                   7***************97899*******9999999999999555789************************************8.************ PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC.......CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg.......gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg 184
                    +++ +n+ s+fl ak+a+p +mk +       gsi+ ++sv++ r+ ++ + y+a+K a+++l++++A++l+  ++RvNa++pg+i+T +++ + +
    CCE30121.1 208 MEVMRINTLSVFLAAKYAAPaMMKTSpskpqscGSIIGTASVAGLRSNAGSTPYSASKTAVVSLAQTMAYQLAGTNVRVNAICPGLIETGMTALVYE 304
                   ********************77776688999************************************************************887776 PP

                   ...HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 185 ...fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                      ++  ++++ +  p +r g ++e+a++alfL sde+sy++Gq  +v gGl+
    CCE30121.1 305 sarARGSENKIGQLNPTKRGGHADEIARVALFLGSDESSYVNGQAWAVCGGLS 357
                   444666999******************************************86 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   1.3   5.2e-55   1.5e-51       1     190 [.     101     302 ..     101     307 .. 0.96

  Alignments for each domain:
  == domain 1  score: 174.6 bits;  conditional E-value: 5.2e-55
                 SEEEEESTTS..HHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSG CS
   adh_short   1 kvvlvtGass..GIGraiakelakeGakvvv.vdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpf 93 
                 kvv++tGa s  GIGra+a+++a++Gak +  +d+ +++l++   e++++    +++++q+D +d+++v+a+v++a +++g+ldv+ +NAGi   ++ f
  CCE30121.1 101 KVVIITGANSalGIGRATAHQFAENGAKAIYiCDYDDSNLAAHQHEIEAAypHVDVHPWQFDAADEDKVKAVVDDALERYGQLDVFFANAGItGINTVF 199
                 89******8766****************9999******************9999**************************************888999* PP

                 GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH......HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHH CS
   adh_short  94 selseeewervievNltgvflltravlpaml......kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdm 186
                  e++++++ +v+ +N  +vfl+++ ++pam+       qs G+I+ ++Svag+ ++ag ++YsAsK av++l++++a +la t++rvna++PGl++T+m
  CCE30121.1 200 TEFTSADFMEVMRINTLSVFLAAKYAAPAMMktspskPQSCGSIIGTASVAGLRSNAGSTPYSASKTAVVSLAQTMAYQLAGTNVRVNAICPGLIETGM 298
                 *******************************9999877999********************************************************** PP

                 HHHH CS
   adh_short 187 akel 190
                 ++ +
  CCE30121.1 299 TALV 302
                 9865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.6   6.1e-14   1.8e-10       3     165 ..     103     277 ..     101     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 6.1e-14
                 EEEETTTS..HHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.---TT CS
          KR   3 ylitGGlG..gLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dklle 98 
                 ++itG+    g+G+++a++ ae+ga+ + ++  + ++ ++++++i++ +   ++v+  + D +d+d+v+a+++++ ++ +++   +  Ag++  ++ ++
  CCE30121.1 103 VIITGANSalGIGRATAHQFAENGAKAIYICDYDDSNLAAHQHEIEA-AYPHVDVHPWQFDAADEDKVKAVVDDALERYGQLDVFFANAGITGiNTVFT 200
                 78999977226789*******************97666666666653.4459***************************************98677889 PP

                 T--HHHHHHHH.........TTTTHHHHHHHHHTTT.S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH CS
          KR  99 emtaedleqvl.........apKvkGawnLhelled.esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs 165
                 e t++d+ +v+         a+K ++   +++  ++ +s   ++ ++S+agl  +ag + Y+a  + + +la++ + 
  CCE30121.1 201 EFTSADFMEVMrintlsvflAAKYAAPAMMKTSPSKpQSCGSIIGTASVAGLRSNAGSTPYSASKTAVVSLAQTMAY 277
                 999999988853333333337999999998887666799***************************99999998765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   3.4e-07     0.001       2     228 ..     104     340 ..     103     353 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.4e-07
                 EEETTTSH..HHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S---HHHHHH.. CS
   Epimerase   2 lVtGatGf..iGsalvkallekgyevigldrlssasntarledl.........elveldltdrs....alerlfkee.qpdavihlAavggvaasse.. 82 
                 ++tGa+    iG+a++++++e+g + i +  + +++  a+++++         +  + d  d++     ++++++++ q d+ +  A++ g+++ ++  
  CCE30121.1 104 IITGANSAlgIGRATAHQFAENGAKAIYICDYDDSNLAAHQHEIeaayphvdvHPWQFDAADEDkvkaVVDDALERYgQLDVFFANAGITGINTVFTef 202
                 678877764489***********997777777444444444444999****997778888887733345566667778999999999999999888733 PP

                 SHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTS CS
   Epimerase  83 dpadfieknlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngege 181
                 + adf+e   + tl ++ aa+ a +  ++  s s     +  + + +++   + + ++pY+a+K+a+ +l++ +  +y+l  +++r+ n + p+     
  CCE30121.1 203 TSADFMEVMRINTLSVFLAAKYAAP-AMMKTSPSKPQSCGSIIGTASVAGLRSNAGSTPYSASKTAVVSLAQTM--AYQLAGTNVRV-NAICPG---LI 294
                 589****************997777.5555555444443333445566655555999***************76..9999******6.899999...88 PP

                 TTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 182 vsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvleh 228
                 ++++ + + +++ ++  +   +g++++    ++++++a++ l++   
  CCE30121.1 295 ETGMTALVYESARARG-SENKIGQLNPTKRGGHADEIARVALFLGSD 340
                 9***********9999.99999*****************99998665 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.4e-05     0.042       1      74 [.     103     174 ..     103     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
                      EEEETTTSH..HHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT CS
  Polysacc_synt_2   1 vlvtGagGs..iGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekale 74 
                      v++tGa  +  iG++  +q++++ +k i++ + d+ +l + ++e+e+ + +  +  +++p   d +d+++++ +++
       CCE30121.1 103 VIITGANSAlgIGRATAHQFAENGAKAIYICDYDDSNLAAHQHEIEAAYPH--V--DVHPWQFDAADEDKVKAVVD 174
                      799**987633789******************************9877776..4..55688999999999887765 PP

>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   6.7e-05       0.2      28      75 ..     246     293 ..     237     312 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.7e-05
  Ribosomal_S11  28 saGglgvkasrkssPyaaqlaaekaaekvldkGikavevkvkgpGpGr 75 
                    +a   g++++  s+Py+a ++a     +++ + +   +v+v++  pG 
     CCE30121.1 246 TASVAGLRSNAGSTPYSASKTAVVSLAQTMAYQLAGTNVRVNAICPGL 293
                    455678899999*******************************88884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2783.27
//
Query:       CCE30122.1  [L=505]
Description: uncharacterized protein CPUR_03970 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.022   15.5   0.1      0.057   14.2   0.1    1.7  1  Cadherin_C_2  Cadherin cytoplasmic C-terminal
      0.049   13.6   0.0      0.074   13.0   0.0    1.1  1  DUF5090       Domain of unknown function (DUF5090)


Domain annotation for each model (and alignments):
>> Cadherin_C_2  Cadherin cytoplasmic C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   6.3e-06     0.057       3      51 ..     169     218 ..     167     238 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.3e-06
  Cadherin_C_2   3 tlYLviaLasvSflFLltvivlvavrlrkerksaalqkkk.slvskpalk 51 
                   t+  +iaLa+v  + Ll+  v++ + +r++r+ + +++k+ s  s p+++
    CCE30122.1 169 TVAVTIALATVAGVALLAAAVFLWMLCRRRRSGNLISRKAkSGISAPSVP 218
                   56678*****************9999999998888888543344444433 PP

>> DUF5090  Domain of unknown function (DUF5090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.3e-06     0.074      19      79 ..     144     202 ..     131     220 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.3e-06
     DUF5090  19 kkveekvkeqiekieeSklGkklPtevk.nlklkdiikitlllkavllipiyllviaengnk 79 
                 +  e +++ +   +++S++G+++Pt v   + l++++ ++ll  av   ++++l+ + ++ +
  CCE30122.1 144 DGHESAIESTALTAKNSAIGNRIPTTVAvTIALATVAGVALLAAAV---FLWMLCRRRRSGN 202
                 5568889999999*************96468899999999998775...5678886666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 4228.94
//
Query:       CCE30123.1  [L=1165]
Description: related to histone acetyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-76  254.0   0.0    9.4e-76  253.5   0.0    1.2  1  MOZ_SAS    MOZ/SAS family
    2.6e-20   71.8   3.0    2.6e-20   71.8   3.0    2.8  4  zf-MYST    MYST family zinc finger domain
    1.5e-08   34.6  10.8    4.6e-08   33.0  10.8    1.9  1  PHD_4      PHD-finger
     0.0077   16.1  12.1     0.0077   16.1  12.1    2.1  2  PHD        PHD-finger
  ------ inclusion threshold ------
        1.2    8.9   4.9        2.8    7.8   4.9    1.6  1  zf-MIZ     MIZ/SP-RING zinc finger
        1.8    8.5   8.0       0.14   12.1   2.2    2.1  2  C1_1       Phorbol esters/diacylglycerol binding domain (C1 d
        2.7    7.9   8.4        4.9    7.1   8.4    1.3  1  zf-RING_9  Putative zinc-RING and/or ribbon


Domain annotation for each model (and alignments):
>> MOZ_SAS  MOZ/SAS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.5   0.0   3.7e-79   9.4e-76       1     174 [.     629     808 ..     629     813 .. 0.97

  Alignments for each domain:
  == domain 1  score: 253.5 bits;  conditional E-value: 3.7e-79
     MOZ_SAS   1 ppGkeiYrkeklsvfevdGekeklycqnLcllaklFldhktlyydvepFlfYvlteadeegahivGyFskekesaeeynlaCilvlPpyqrkgyGklli 99 
                 ppG+eiYr+e++s+fevdG+k+ +ycqnLcllaklFl +ktlyydvepFlfYvl+e d++g+h+vGyFskek +++++n++Cil+lP +qrkgyG+lli
  CCE30123.1 629 PPGDEIYRHESVSIFEVDGRKHPVYCQNLCLLAKLFLGSKTLYYDVEPFLFYVLCEFDDTGYHFVGYFSKEKRASSQNNVSCILTLPIHQRKGYGNLLI 727
                 8************************************************************************************************** PP

     MOZ_SAS 100 efsYeLskrekkigtPekPlsdlgllsyrsywkeeilellkek......ekkkisieeisektgikeeDiistleelkllk 174
                 +fsY L+k+e+k+g+PekPlsd+gl+syr+yw+ e+++++ +       +k+ +si++is+ +g++++D++s le l+ l 
  CCE30123.1 728 DFSYLLTKVEEKTGSPEKPLSDMGLVSYRNYWRLELCRYFLRYmegdrhKKEGLSIKKISDDSGMTADDVVSGLEGLRALV 808
                 **************************************988878999988999*********************9988765 PP

>> zf-MYST  MYST family zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.6     4e+03      30      38 ..     205     213 ..     199     214 .. 0.79
   2 ?   -3.4   0.4         3   7.8e+03      28      39 ..     253     264 ..     251     265 .. 0.85
   3 !   71.8   3.0     1e-23   2.6e-20       3      55 .]     572     624 ..     570     624 .. 0.98
   4 ?   -2.2   0.2       1.2   3.1e+03      31      44 ..     760     773 ..     754     778 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.6
     zf-MYST  30 ekLyvCefC 38 
                   L vC fC
  CCE30123.1 205 GPLHVCTFC 213
                 5699***** PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3
     zf-MYST  28 nkekLyvCefCl 39 
                 n+++ + C  C+
  CCE30123.1 253 NCAQAWKCPACF 264
                 7888999****9 PP

  == domain 3  score: 71.8 bits;  conditional E-value: 1e-23
     zf-MYST   3 niekieiGeyeiktWYfSpYPeelankekLyvCefClkYmksakelerHkkkC 55 
                 +ie ie+G +ei+tWY +pYP+e+++++ Ly+CefClkYm+s+  + rHk kC
  CCE30123.1 572 QIECIEFGGWEIDTWYAAPYPAEYSRNRVLYICEFCLKYMNSDYVAWRHKLKC 624
                 6999************************************************* PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.2
     zf-MYST  31 kLyvCefClkYmks 44 
                 +L +C + l+Ym+ 
  CCE30123.1 760 RLELCRYFLRYMEG 773
                 5668*******985 PP

>> PHD_4  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0  10.8   1.8e-11   4.6e-08       6      67 ..     209     263 ..     206     264 .. 0.94

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.8e-11
       PHD_4   6 aCivCgedgkedevveeesetpsslmeCsvCyeivHpeClkekegegvvnedlpnsWeCpkC 67 
                 +C++C++d+++d     +se  ++++ C+ C e +H +C++   +  + +e+ ++ W+Cp C
  CCE30123.1 209 VCTFCKQDEEND-----PSEDFEMYLACTGCGENAHQQCARD--AAAMTEENCAQAWKCPAC 263
                 8***********.....7999*******************88..7889999*********** PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  12.1     3e-06    0.0077       1      49 [.     209     263 ..     209     266 .. 0.79
   2 ?   -1.5   0.1      0.98   2.5e+03      43      50 ..     601     608 ..     591     610 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3e-06
                 SBTTTTS.....TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSS.TBSSTTT CS
         PHD   1 rCavCkk.....ksdeeeelvqCdgCkrwfHqkClkppleseekpeg.ewlCekC 49 
                 +C +Ck+      s++ e  + C gC++  Hq+C +    ++e+     w C+ C
  CCE30123.1 209 VCTFCKQdeendPSEDFEMYLACTGCGENAHQQCARDAAAMTEENCAqAWKCPAC 263
                 5******87432233355679**************9999877776667******* PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.98
                 TBSSTTTH CS
         PHD  43 ewlCekCk 50 
                  ++Ce C 
  CCE30123.1 601 LYICEFCL 608
                 69999995 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.9    0.0011       2.8      22      47 ..     238     263 ..     226     266 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
                 -SS--EEHHHHHHHHHHS---B-TTT CS
      zf-MIZ  22 kHlqCfdlesylelnertetWnCPvC 47 
                  H+qC    + ++  + +++W+CP C
  CCE30123.1 238 AHQQCARDAAAMTEENCAQAWKCPAC 263
                 6****98888888888999******* PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.2   5.4e-05      0.14      15      50 ..     211     250 ..     206     255 .. 0.73
   2 ?   -1.8   0.7       1.2   3.1e+03      26      34 ..     255     263 ..     250     265 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.4e-05
                 TTT-SB-....-SSSS-EEEETTT--EE-CCCCTTS-SBT CS
        C1_1  15 khCgefl....wgkekqglkCswCkllvHkkChekvpkec 50 
                 + C++      ++ +   l+C+ C++++H++C++ ++ ++
  CCE30123.1 211 TFCKQDEendpSEDFEMYLACTGCGENAHQQCARDAAAMT 250
                 4444443444344777889**************9988765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
                 S-EEEETTT CS
        C1_1  26 kqglkCswC 34 
                  q++kC +C
  CCE30123.1 255 AQAWKCPAC 263
                 699***999 PP

>> zf-RING_9  Putative zinc-RING and/or ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   8.4    0.0019       4.9     156     197 ..     208     259 ..     204     267 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0019
   zf-RING_9 156 fiCelCkseellfpf.qlktverCekCkavfHkeClkkkekk.........e 197
                 ++C +Ck++e   p  + + +  C+ C++  H++C ++++           +
  CCE30123.1 208 HVCTFCKQDEENDPSeDFEMYLACTGCGENAHQQCARDAAAMteencaqawK 259
                 79******999999735666679*************9887665554554445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.10u 0.30s 00:00:01.40 Elapsed: 00:00:00.47
# Mc/sec: 7465.97
//
Query:       CCE30124.1  [L=320]
Description: uncharacterized protein CPUR_03972 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-17   62.7   8.1    2.4e-17   62.1   3.1    2.9  3  zn-ribbon_14  Zinc-ribbon
    4.3e-12   46.1   0.0    6.7e-12   45.5   0.0    1.3  1  ATP_bind_3    PP-loop family
  ------ inclusion threshold ------
      0.092   12.3   2.8      0.098   12.2   0.4    2.2  3  RecR          RecR protein


Domain annotation for each model (and alignments):
>> zn-ribbon_14  Zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2     0.033     2e+02       1       8 [.      69      76 ..      69      82 .. 0.82
   2 ?   -0.9   0.0      0.21   1.2e+03      19      30 ..     177     188 ..     175     189 .. 0.87
   3 !   62.1   3.1     4e-21   2.4e-17       1      31 [.     288     318 ..     288     319 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.033
  zn-ribbon_14  1 gkCerCGy 8 
                  g+C+ CG 
    CCE30124.1 69 GNCTYCGV 76
                  79*****7 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.21
  zn-ribbon_14  19 vLLegLnkgrpk 30 
                   +L+++L+k rp 
    CCE30124.1 177 TLIKSLEKVRPS 188
                   799*****9995 PP

  == domain 3  score: 62.1 bits;  conditional E-value: 4e-21
  zn-ribbon_14   1 gkCerCGylSSqkiCkACvLLegLnkgrpkl 31 
                   g+C +CGy+SSq++C+AC+LLe+Lnk+rp++
    CCE30124.1 288 GQCVKCGYMSSQEMCQACTLLETLNKNRPEV 318
                   69***************************97 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   1.1e-15   6.7e-12      22     167 ..       6     163 ..       1     177 [. 0.84

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 1.1e-15
                 HCTTTTTEEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE--H..........HHCTTSTCCCHHHHHHHHHHHHCHHCCT.CEEE---BHHHHH CS
  ATP_bind_3  22 lkkklgiklvaihvdhglreeskeeaelvkelckklnikleiekvdv..........akkkgknleeaARelRYevlkealkkegievlllAhhadDqa 110
                 ++++ +++lv++ vd g++   ++  e+vk+ + +++++l+i   d           ++  +k+  +    +R ++l++ +k  +i++++++h+adD a
  CCE30124.1   6 ERHNYQLDLVLLSVDEGIKGYRDDSLETVKRNAVQYDMPLQIVGYDQlygwtmdqvvETIGKKGNCTYCGVFRRQALDRGAKMLNIRHVVTGHNADDVA 104
                 4456677999*********************************99999988876554333355555667789*************************** PP

                 HHHHHHHCCT--CCHHH-S-SEEEETTCCEE-..CCCT--HHHHHHHHHHTT---B--C CS
  ATP_bind_3 111 EtfllrlargsglaglagikeaseiasirlvR..PlLkvskeeleeylkekkikwveDe 167
                 Et+l++l rg  ++   +++ ++  as ++ R  Pl   + +e+  y+++kk++++  e
  CCE30124.1 105 ETVLMNLLRGDLPRLSRSTSIVTGSASSEVKRskPLKYAYEKEIVLYAHHKKLDYFSTE 163
                 *************999888888877776666655*********************9766 PP

>> RecR  RecR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       0.4   2.4e+03      18      25 ..      70      77 ..      63      81 .. 0.71
   2 ?   -3.4   0.0       1.3   7.6e+03       3      13 ..     176     186 ..     175     187 .. 0.53
   3 ?   12.2   0.4   1.6e-05     0.098      15      35 ..     286     306 ..     283     307 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.4
                E-TTT--E CS
        RecR 18 hCsrCgnl 25
                 C  Cg +
  CCE30124.1 70 NCTYCGVF 77
                57777755 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.3
                 HHHHHHHHHHH CS
        RecR   3 eeLaeaLqeak 13 
                 + L+++L++++
  CCE30124.1 176 RTLIKSLEKVR 186
                 55666665554 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 1.6e-05
                 H-EE-TTT--EESSSS-CCCC CS
        RecR  15 kvrhCsrCgnlteedlCaICs 35 
                 ++++C +Cg ++ ++ C+ C+
  CCE30124.1 286 TLGQCVKCGYMSSQEMCQACT 306
                 6789****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2366.32
//
Query:       CCE30125.1  [L=262]
Description: probable ribosomal protein L7a.e.B, cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-22   76.6   0.8    1.6e-21   75.8   0.8    1.4  1  Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 famil
  ------ inclusion threshold ------
        0.1   11.6   0.2       0.12   11.3   0.2    1.1  1  CLPTM1          Cleft lip and palate transmembrane protein 1 


Domain annotation for each model (and alignments):
>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.8   1.8e-25   1.6e-21       3      94 ..     122     214 ..     120     215 .. 0.93

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 1.8e-25
                     HHHHHHHHHHHTEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHHHTTEEEEEESCHHHHHHHTTSSSE.CSEEEEEESTTTHHH CS
  Ribosomal_L7Ae   3 ieevlkkakkagklvlGlkevtkalergeaklvilAedvepeekkkllealckekevpyvkvkskkeLGelvgkkrp.vsalaikdegdskdl 94 
                      +++  ++kk+ ++++Gl++v+ ++e+++a lv++ +dv+p+e + +l+ lck+++vpy +vk+k++LG++v+kk++ v al+ +  +d+++l
      CCE30125.1 122 GKKKEDVSKKPYTVKYGLNHVVGLIENKKASLVLIPNDVDPIELVVFLPSLCKKMGVPYAIVKGKARLGTVVHKKTAaVLALTEVRSEDKTEL 214
                     67888999*******************************************************************998888888888888765 PP

>> CLPTM1  Cleft lip and palate transmembrane protein 1 (CLPTM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   1.4e-05      0.12     123     176 ..      82     137 ..      21     162 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.4e-05
      CLPTM1 123 dekydkksvvhktkqLtkylpkkkekktknLlkekeeeeeee...ekeekpvivsyw 176
                 ++ +d++++ +  k L+ky p++k++k+  Llke ++ +e +   + ++kp +v+ +
  CCE30125.1  82 QSVLDRNTAAQAFKLLNKYRPETKAEKKDRLLKEATAIKEGKkkeDVSKKPYTVK-Y 137
                 667889999999**********************999666652223333333333.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2042.52
//
Query:       CCE30126.1  [L=366]
Description: related to integral membrane protein PTH11 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2940.75
//
Query:       CCE30127.1  [L=522]
Description: related to allantoate transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-34  119.6  31.5    8.1e-34  117.1  32.5    1.6  2  MFS_1       Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.42   10.6   0.0    2.0  2  Holin_BhlA  BhlA holin family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1  32.5     9e-38   8.1e-34       1     353 []      74     447 ..      74     447 .. 0.89
   2 ?   -1.6   0.0      0.11   9.9e+02     160     187 ..     475     499 ..     463     516 .. 0.66

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 9e-38
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 ++l++ + +l+  il+ a+ + l++dl++s+  ++ ++t+ ++g + + +p  ++ + + + ++l + ++l+++++++++ a+++  ll++r++ G+++
  CCE30127.1  74 MFLCYTMQFLDKVILNYAAVMGLNKDLNLSGNDFSNIATFLFVGLLCFEIPNIYFLQVIPAAKWLGANVALWGVATACGAAAHNYQSLLASRIFLGIFE 172
                 599************************************************************************55555458888************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllgg......llasslg.....Wravfyilaivsllafvlfllllpeepperkrkspkee 187
                 ++++p+ + + ++w++k+e++  ++++++g +lG i+g l++             g     Wr +f+ l+ v+++++++ +l++p++p + k+ s++e+
  CCE30127.1 173 ATIAPSLMLISSQWYTKSEQAPRFSFWYLGLGLGQIVGGLVSFgfqhmaP-----GaalagWRTMFVTLGCVTVVLGICTFLFIPDTPMKAKWLSDAEK 266
                 **************************************999984444440.....244444************************************** PP

       MFS_1 188 e............kgtgpaplvp......awkallkdpvlwillialllfffgfsglltllplylqevlgls....glllaglllallalvgailalla 264
                                      ++       + + l dp++++ll++++l+++    ++t++ ++++  l       ++  a+ll + ++lv++++ l++
  CCE30127.1 267 VallkhvsvnqtgI-------SSrkfrykEILEALGDPQIYLLLLSVILISISSGVITTYSSTLIKNILSDQspdrAAKNAALLNMPSGLVSIAFTLIV 358
                 97777744443332.......225555565667777777766777777776566669999999877777777899*7799999999999999999**** PP

       MFS_1 265 grlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 g+ +++ + r+++++a+++ +++  +l+ + ++s+ v +l++++l+   ++   + ++  +++ a++ ++++a++l++  +s+g ++gp
  CCE30127.1 359 GFGVRKQSQRWAWIIACIIPAIIGGALISFLPSSNRVGILAGIYLVNAVVAPLAIFYNWTVVNCAGATKRAFAAALVSGSFSIGNIIGP 447
                 ****************************************************************************************8 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.11
       MFS_1 160 vsllafvlfllllpeepperkrkspkee 187
                  +   ++lf+ ++++++++  r++++ee
  CCE30127.1 475 TT---LLLFFYYVWANKRRDDRSRETEE 499
                 22...23555788888888888888877 PP

>> Holin_BhlA  BhlA holin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.3   1.1e+04      39      52 ..     282     295 ..     270     296 .. 0.75
   2 ?   10.6   0.0   4.7e-05      0.42      21      54 ..     478     513 ..     472     517 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.3
  Holin_BhlA  39 erekkyqeiikklt 52 
                  r  +y+ei++ l 
  CCE30127.1 282 SRKFRYKEILEALG 295
                 68889999998875 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 4.7e-05
  Holin_BhlA  21 vllvYilkkqekreekqeerekkyq..eiikkltek 54 
                 +l++Y + ++++r+++  e e++y   ++ ++lt+k
  CCE30127.1 478 LLFFYYVWANKRRDDRSRETEEQYLspDVWSTLTDK 513
                 799********************9522688888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3679.19
//
Query:       CCE30128.1  [L=571]
Description: probable PCK1-phosphoenolpyruvate carboxykinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.9e-214  710.4   0.0     1e-213  710.2   0.0    1.0  1  PEPCK_ATP  Phosphoenolpyruvate carboxykinase
  ------ inclusion threshold ------
       0.12   12.7   0.0       0.21   12.0   0.0    1.3  1  AAA_16     AAA ATPase domain
       0.18   12.0   0.0       0.34   11.1   0.0    1.4  1  AAA_33     AAA domain


Domain annotation for each model (and alignments):
>> PEPCK_ATP  Phosphoenolpyruvate carboxykinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  710.2   0.0  1.7e-217    1e-213       3     464 ..      57     522 ..      55     523 .. 0.99

  Alignments for each domain:
  == domain 1  score: 710.2 bits;  conditional E-value: 1.7e-217
                 EEES--HHHHHHHHHHTTS.-EE-TTS-EEE--TT--S--GGGEEEE--TTTTTTS-BTTTBEEE-HHHHHHHHHHHHHHHHTS.-EEEEEEEE-SSTT CS
   PEPCK_ATP   3 virnlsvaeLveealkree.gkltstgalvvetgkktgRspkdkfiVedeetedkiwWgkvnkpiseekfealkekvleylkek.elyvvdafagadpk 99 
                 +i n+sva+L+e+al  e+ + +ts+gal++++gkktgRsp dk+iVe+++++d+iwWg vnkp+s+e ++ ++e++++yl+++ ++yvvd++ag+d+k
  CCE30128.1  57 IIPNPSVAALYEDALVYETgSAITSSGALTAYSGKKTGRSPLDKRIVEEPSSKDDIWWGPVNKPMSSEVWKINRERAVDYLNTRnRIYVVDGYAGWDEK 155
                 788**************99899**************************************************************9************** PP

                 T-EEEEEEES-HHHHHHHHHHSBGGS-S-TTT---SEEEEEETT----HHHH--SSS-EEEEETTTTEEEEES---THHHHHHHHHHHHHHHH.HTT-E CS
   PEPCK_ATP 100 yrlkvrviterawqalfvknllirpteeeleefepdftilnapefkadpekdglnsetvvalnlekklvlilgteYaGEikKsifsvmnyllp.kkgvl 197
                 yr++vrvi+ ra++alf++n+lirp +eele+f+pd+ti+na++f a+++++g++s t+va+n+++k+++ilgteYaGE+kK++f+v+ y +p k++vl
  CCE30128.1 156 YRIRVRVICARAYHALFMRNMLIRPPREELEHFHPDYTIYNAGSFPANRYTEGMTSPTSVAINFSQKEMVILGTEYAGEMKKGVFTVLFYEMPvKHNVL 254
                 *********************************************************************************************99**** PP

                 EEEEEEEE-T.TS-EEEEEE-TTSSHHHHH-BTTB-EEESSEEEE-SS-EEES-SEEEEE-TT--TTTSHHHHHHHSTT-EEES-EE-TTT--EETT-- CS
   PEPCK_ATP 198 smhcsanvgekkgdvalfFGLSGtGKTtLsadperkligdDehgwsdegvfniegGcYaKtidLskekepeiynairfgavlENvvldeetrevdfddt 296
                 ++h+san g ++gdv+lfFGLSGtGKTtLsadp+r+ligdDeh+wsd+gvfniegGcYaK+i+Ls+ekep+i+ air+g+vlENvv+d++trevd+dd+
  CCE30128.1 255 TLHSSANEG-RNGDVTLFFGLSGTGKTTLSADPNRALIGDDEHCWSDRGVFNIEGGCYAKCIGLSAEKEPDIHGAIRYGSVLENVVFDPDTREVDYDDA 352
                 *********.677************************************************************************************** PP

                 SS-S--EEEEEGGGSSSB-TTSEE.--EEEEEEEE--TTS-S-SEEEE-HHHHHHHHHH-EEEE-----------EEEE-GGG-GGG-SS-HHHHHHHH CS
   PEPCK_ATP 297 slteNtrvaypiehienakeesva.ghpkniifLtadafgvlPpvskLtkeqamyhFlsGytakvaGtergvtepeatFsacfgapFlplhpteyaelL 394
                 +lteNtr+aypie+i+nak ++++ + p+nii+Lt+da gvlPp+skL+++q+m+hF+sGyt+k+aGte gvtep+atFs+cf++pFl+lhp++ya++L
  CCE30128.1 353 TLTENTRCAYPIEYISNAKIPCLSeNMPTNIILLTCDARGVLPPISKLNRSQTMFHFISGYTSKMAGTEDGVTEPQATFSSCFAQPFLALHPMRYAKML 451
                 **********************99899************************************************************************ PP

                 HHHHHHH--EEEEEE-SEESSSTTT.SEE--HHHHHHHHHHHHTTCCCTS-EEE-TTT--EEES-BTTC-G CS
   PEPCK_ATP 395 aeklekhnakvyLvNtGwtggaygv.gkrislkatraiikaildgeleavefekdpvfglevptevpgvps 464
                 a+k+e+h+++++L+NtGw+g  +   gkr++lk+trai++ai++gel++v++e+  vf+l+vp ++p+vp+
  CCE30128.1 452 ADKIEQHGSNAWLLNTGWVGAGFAHgGKRCPLKYTRAILDAIHSGELATVQYETYGVFNLQVPMTCPNVPD 522
                 ********************9988879******************************************96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.4e-05      0.21      15     105 ..     256     358 ..     251     416 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.4e-05
      AAA_16  15 alervrsgrp.elvllsGesGvGKsslvrellralekd.......ggif.lrgkcdql..esaipysa.laqalareellrqlldeaesaeleawrekl 101
                 + +++++gr   ++l+ G sG+GK++l     ral +d       +g+f ++g c     + +++  + +  a+   ++l+ +  +++++e+++++++l
  CCE30128.1 256 LHSSANEGRNgDVTLFFGLSGTGKTTLSADPNRALIGDdehcwsdRGVFnIEGGCYAKciGLSAEKEPdIHGAIRYGSVLENVVFDPDTREVDYDDATL 354
                 55577777777899**************99999999998999987677777776665533222222444666665666666666666666666666666 PP

      AAA_16 102 eeal 105
                 +e++
  CCE30128.1 355 TENT 358
                 6655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.6e-05      0.34       1      17 [.     268     284 ..     268     290 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.6e-05
      AAA_33   1 lvllvGlpGsGKstlae 17 
                 ++l+ Gl+G+GK+tl+ 
  CCE30128.1 268 VTLFFGLSGTGKTTLSA 284
                 689***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4331.40
//
Query:       CCE30129.1  [L=1162]
Description: probable SUP35-eukaryotic peptide chain release factor GTP-binding subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-42  143.3   0.0      1e-41  142.7   0.0    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    6.6e-29  100.5   0.1    1.5e-28   99.3   0.1    1.7  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    1.8e-23   83.6   0.0      4e-23   82.4   0.0    1.6  1  Cupin_8      Cupin-like domain
    9.9e-09   35.5   0.5      4e-08   33.5   0.1    2.2  2  GTP_EFTU_D2  Elongation factor Tu domain 2
     0.0042   16.6   0.0      0.021   14.3   0.0    2.0  2  Cupin_4      Cupin superfamily protein
     0.0046   17.0   0.1      0.018   15.1   0.1    1.9  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.051   14.0   0.0       0.12   12.8   0.0    1.6  1  JmjC         JmjC domain, hydroxylase
       0.17   11.7   0.0       0.56    9.9   0.0    1.9  1  Cupin_2      Cupin domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   0.0   4.5e-45     1e-41       1     183 [.     729     942 ..     729    1007 .. 0.88

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 4.5e-45
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST.............HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHH CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv.............lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFske 86 
                 k+++ni++ighvD+GK+TL +++l++tg+++++++++ ++++             +D +keEr +g T+++    +e  t+k++++++D+PGH+ ++ +
  CCE30129.1 729 KEHVNIIFIGHVDAGKSTLGGSILWSTGMVDERTMDKYKREAkdlgreswylswvMDLTKEERTKGKTVEVGRGFFE--TEKRRYSILDAPGHKTYVPN 825
                 689********************************99553334889*******************************..******************** PP

                 HHHHHHT-SEEEEEEETTTB.......STHHHHHHHHHHHHTTTE.EEEEEESCGST.....HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEE CS
    GTP_EFTU  87 virglrvlDgavlvvdaveG.......vepqteevlrlalkegvp.iivfiNKmDrl.....kaelkeiveevkqklsrkeeklekygekgekevpvvf 172
                 +i g++++D+ +lv++a++G          qt+e++ la+++gv+ +iv+iNKmD +     +++++e+ ++++q l       +  g++ +++v +++
  CCE30129.1 826 MIGGASQADVGILVISARKGeyetgfeRGGQTREHAMLAKTQGVNkLIVAINKMDDTtvewsQERYNECTTKLSQFL-------KGTGYNLKTDVFFMP 917
                 *************************9999****************************99999999999999999666.......555555556788888 PP

                 EBTTTTBTHH..............H CS
    GTP_EFTU 173 gSalkgegvk..............t 183
                 ++a +  ++k              +
  CCE30129.1 918 VAAQSSLNIKnrlpeglapwwsgpS 942
                 8888888777444555555555543 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.1   6.8e-32   1.5e-28       4     111 ..    1049    1157 ..    1046    1158 .. 0.94

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 6.8e-32
                   EECCEEEEEEESSS..SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEEC...CEEEE--TTTHCCCCEEEE CS
  GTP_EFTU_D3    4 phtkfeAqvyilekerhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnviveveli...kpialekgseypqlGrFai 96  
                    +++feAq+ il    +t++ +g+++vl++++a +++++++Ll+kl+k t+++s+  p  +k+Gd++i+++++i     +++ek+++ypq+GrF++
   CCE30129.1 1049 CVAEFEAQIRILDL--KTILSSGFNCVLHVHSAIEEVTFAALLHKLQKGTNRKSKAPPTHAKKGDSIIARMQVIggaGSVCVEKFEDYPQMGRFTL 1142
                   5789**********..********************************************************9833358***************** PP

                   ECTTCEEEEEEEEEE CS
  GTP_EFTU_D3   97 ReggrTvaaGvvtei 111 
                   R++g+T+a+G++t++
   CCE30129.1 1143 RDQGQTIAIGKITRL 1157
                   ************986 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   1.8e-26     4e-23     100     251 ..     187     348 ..     117     351 .. 0.66

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 1.8e-26
     Cupin_8 100 ylqnanlasefpelked.sdlpfateafgkkpeavnlWlGnsasvsslHkDhyeNlycvvrGrKkftLfpPsdapflyeaslsptedgtvvssvdve.. 195
                 y+++ +l++   +l+e+    ++ t+a ++   + ++WlG++ + + lH+D+  Nl+c++  +K ++L+pPs ++++  + +++  +++  s++ ++  
  CCE30129.1 187 YIAQCPLSDLPLSLQEKlAAPELVTRAGKGDIYSSSIWLGTEPTYTPLHRDPNPNLFCQMWRQKVVRLLPPSTGDRVFFEVQQQ-IQQQGNSRIRTAem 284
                 333333333333344444455566677777777999**************************************9996554322.33444555555523 PP

     Cupin_8 196 .....epdlekfprlkda..kkalevtlnaGevLylPalWfHeVkslaeep.lhlavnywydms 251
                      ++ l++     da    + e++l +G++L++P++W+H Vks ++++ ++++vn+w+ +s
  CCE30129.1 285 mqgkeRLALHDAIWENDAppDGMCEAELDPGDALFIPEGWWHSVKSRESDGfINVSVNWWFSNS 348
                 344454444444444444667899**********************98555589*******987 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.2   2.7e+03      28      50 ..     272     294 ..     258     297 .. 0.68
   2 !   33.5   0.1   1.8e-11     4e-08       1      74 []     973    1041 ..     973    1041 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
                  SEEEEEEEEEEEEETEEESEEET CS
  GTP_EFTU_D2  28 kkeivtrissletfhededeava 50 
                  ++   +ri+  e+++++e+ a +
   CCE30129.1 272 QQQGNSRIRTAEMMQGKERLALH 294
                  333569*********99987665 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 1.8e-11
                   EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETE.EESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2    1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhe.dedeavaganaGvivaikgledaiivGdtlt 74  
                   Gt ++g+++ G++kkG+ +++  ++ ++    +++s+l+ ++e ++ ++ +g+++   +++++ ed i+ G +l+
   CCE30129.1  973 GTMCDGKIEAGVVKKGMSLVL--MPRKQA---VEVSALYGEQEeEVPILQCGDQVRMRLKGVEEED-ILPGFVLC 1041
                   899******************..555466...*********88677778*****************.******98 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.53   1.2e+03     210     250 ..     114     154 ..     113     170 .. 0.82
   2 !   14.3   0.0   9.2e-06     0.021     144     207 ..     275     341 ..     270     356 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.53
                 CCEEHCCHHHCHHHHHHHHHHHHHHHCTSCHHCTCGTTTGG CS
     Cupin_4 210 raptaaellesvldllldklpeiderlrdallravqargei 250
                 r p  ++l++s+ d+l d+  ++d++l   l +av+++ ++
  CCE30129.1 114 RGPREQDLISSFRDFLWDSEHRKDRDLAVMLRSAVKENPDL 154
                 678899************99999998888888777666655 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 9.2e-06
                 C-EEEEEE-SCCCTTSSSEE--TTCCG--.S-SEEEEE-TT-EEEE-TT-EEEEEBBT.-C.CEEEE CS
     Cupin_4 144 GrkrWrvykptvpelelkseeplkildef.epvedfvLepGDlLYlPrgviHqgvaed.es.ltlSv 207
                 G+ r r  ++++ +++l  ++++ + d   + + +  L pGD L++P g++H+ ++ + ++ +++Sv
  CCE30129.1 275 GNSRIRTAEMMQGKERLALHDAIWENDAPpDGMCEAELDPGDALFIPEGWWHSVKSREsDGfINVSV 341
                 5555555555555555555555544443235567899****************99988755245555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1     8e-06     0.018       2      92 ..     734     849 ..     733     878 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8e-06
                 EEEEESTTSSHHHHHHHHH..................T.............STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt..................g.............ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgka 69 
                 ++++G+  +GKStL  +++                  +             +  + ++++g+T ++ +g ++++++++ ++D pG  +    +  + + 
  CCE30129.1 734 IIFIGHVDAGKSTLGGSILwstgmvdertmdkykreaKdlgreswylswvmDLTKEERTKGKTVEVGRGFFETEKRRYSILDAPG--H----KTYVPNM 826
                 89****************9777777766666665555055566666655545789999999999999999999999*********..4....2345555 PP

                 HHHHHCTSEEEEEEETTTTCSHH CS
    MMR_HSR1  70 flaleeadlillvvdaseeklkp 92 
                 +    +ad+ +lv++a++++++ 
  CCE30129.1 827 IGGASQADVGILVISARKGEYET 849
                 55566689999999988555533 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.5e-05      0.12       5     113 ..     226     342 ..     223     343 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.5e-05
                 E-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHH....HHHHHH.HHCCSTTG.CCTTTCEE-HHH.HHHTT---...EEEEE-TT-EEEE CS
        JmjC   5 gmpksttpwhiedqglySinylhfgapkvWyiipeekkekle....kvlskk.nskeqpdl.lrhkstlispkq.lekegipv...yrfvqkpgefVfv 93 
                 g + ++tp h++ +  +  + + ++++    + p+++ +++     ++++++ ns+   ++ ++ k +l    +  +++  p+   ++ +  pg+++f+
  CCE30129.1 226 GTEPTYTPLHRDPNPNL--FCQMWRQKV-VRLLPPSTGDRVFfevqQQIQQQgNSRIRTAEmMQGKERLALH-DaIWENDAPPdgmCEAELDPGDALFI 320
                 55667777777766555..344444433.3344444444433112222333344444444423333333333.3477777775333788999******* PP

                 -TT-EEEEEESSSE..EEEEEE CS
        JmjC  94 fpgayHsvfnlgfn..iaeavn 113
                 + g++Hsv +  +   i+++vn
  CCE30129.1 321 PEGWWHSVKSRESDgfINVSVN 342
                 ********88765322566665 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00025      0.56      38      61 ..     309     332 ..     304     341 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00025
                 EEEEETTEEEEE-TT-EEEEEE-S CS
     Cupin_2  38 eveleaGdsvyfpagtpHrfrNtg 61 
                 e el +Gd++++p g +H ++ ++
  CCE30129.1 309 EAELDPGDALFIPEGWWHSVKSRE 332
                 67899**************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.78u 0.24s 00:00:01.02 Elapsed: 00:00:00.39
# Mc/sec: 8911.46
//
Query:       CCE30130.1  [L=471]
Description: probable casein kinase II beta subunit CKB1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-72  242.1   0.0    4.5e-72  241.7   0.0    1.1  1  CK_II_beta  Casein kinase II regulatory subunit


Domain annotation for each model (and alignments):
>> CK_II_beta  Casein kinase II regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.7   0.0   2.5e-76   4.5e-72       1     182 []     144     390 ..     144     390 .. 0.93

  Alignments for each domain:
  == domain 1  score: 241.7 bits;  conditional E-value: 2.5e-76
  CK_II_beta   1 sWiswflslkgneyfvevdedfiedkfnltgLseevpnykealelildv...............................eeeeeleeseksevessae 68 
                 +W+s+f+ l g+eyf+ev+e+fied+fnltgL+ +v++ykeale+ildv                               ++++++ +s+ s +essae
  CCE30130.1 144 NWVSSFCALLGHEYFAEVTEEFIEDDFNLTGLQIQVAMYKEALEMILDVepeedidvdeeeeedddnesglgegqgrmggRRRHSRMASDLSVIESSAE 242
                 6******************************************************************************999999************** PP

  CK_II_beta  69 lLYgliHaryiltkkglakmlekykkkefgrCprvlCekqkvLPvGlsdkpgektvklyCpkCedvYspkssrsrsidGafFGttfphlllltypelep 167
                 +LYgliH+r+i+++ g+++m +ky++++fg Cpr++Ce++++LPvGlsd pge+tvkl+Cp+C dvY p++sr +++dGafFG+tf  l+llt+pe++ 
  CCE30130.1 243 MLYGLIHQRFICSRVGIQQMSQKYEAGHFGCCPRTNCEQARTLPVGLSDIPGEDTVKLFCPSCLDVYVPPNSRFQTVDGAFFGRTFGALFLLTFPEYDL 341
                 ***********************************************************************9999**********************95 PP

  CK_II_beta 168 kksk..................................ekyepriyGfk 182
                 +k++                                  + y+p+iyGf+
  CCE30130.1 342 TKRGtevlfsmstsrvpndeplvngmyarnigpglgpgHVYQPKIYGFR 390
                 44445556666666666666666666677777777777**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 4039.03
//
Query:       CCE30131.1  [L=1137]
Description: related to PAN2-component of Pab1p-stimulated poly(A) ribonuclease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-103  346.4   0.1   3.2e-103  345.7   0.1    1.4  1  UCH_1     Ubiquitin carboxyl-terminal hydrolase
      2e-21   77.3   0.0    3.4e-21   76.5   0.0    1.4  1  RNase_T   Exonuclease
     0.0016   18.0   0.0     0.0048   16.4   0.0    1.8  1  UCH       Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.7   0.1  5.4e-107  3.2e-103       1     320 []     488     801 ..     488     801 .. 0.94

  Alignments for each domain:
  == domain 1  score: 345.7 bits;  conditional E-value: 5.4e-107
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplrnlalshlakeckkehcLlcElgflfdmldkakglncqasnFlralssipeasalglileeeeetekssaisls 99 
                 sGLE+hi+nsY+NslLQ+++f+p++rnlal+h+a++c +e cLlcElgflfdml+ka g+ cqa+n+l+alss+pea  +gl+ ee+       ++sl 
  CCE30131.1 488 SGLETHISNSYANSLLQIMHFTPLIRNLALQHAATACLSEICLLCELGFLFDMLQKADGSICQATNLLKALSSHPEAGPMGLL-EED-----PRSASLN 580
                 8*********************************************************************************9.543.....3456899 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 100 sliqsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyP..kpsne.kkeakvtfasilksslerekttra 195
                  + qs+ rf+l+++ +++++ +    +++sa+eq+l+t+a++ irc++C+se +r++st+v+dl yP  kps + +k+++vtf+++lk s+ere+t+++
  CCE30131.1 581 LMLQSLTRFFLSKIVTDYESVS----SASSAMEQVLATSATSLIRCTNCRSEYTRPGSTYVNDLLYPpfKPSGRnAKAPRVTFSQVLKGSIERETTSKG 675
                 9******************987....599*************************************76764443488999******************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
       UCH_1 196 wCekCkryqpteqrktvknlPpvLalnakleeeeelelwktknwlpleiklsldedknl.....eeklkeerekakaekeikvYeLqsvvvhigds.ke 288
                 wC++C+ryq++  rkt+++lP+vL+ln+ +++ e+++lw+t++wlp+ei++++++++++     + +l+ +r      ++i+vY+++++ ++i+++ ++
  CCE30131.1 676 WCSRCQRYQTIAARKTIHSLPAVLMLNTRITSHENRMLWSTPGWLPEEIGIIVEQGQFFcyegeDLQLHLQRG----MHNITVYSVIGMAINIENGpTQ 770
                 *******************************9999********************9999*7777777777777....*****************99667 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 289 sghLvslvkvaekelerdppesqWylFNDflV 320
                 ++hLvs+v+va+ e + ++++sqW+lFNDflV
  CCE30131.1 771 KPHLVSMVNVAHAEPQ-ASQQSQWHLFNDFLV 801
                 *************999.99999********98 PP

>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   5.7e-25   3.4e-21       1     165 []     877    1050 ..     877    1050 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 5.7e-25
                  EEEEEEESSSTT............CTTS-EEEEEEEEEETTCC..EEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHH CS
     RNase_T    1 vviDlEttglda............kekdeiieiaaisidggen..eigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrk 83  
                  v++D+E++ + +            ++++ + ++a+ s+++g+   ++ +++++y++ +e+  + d++t+++git+++ld++ s+++ l+ +k  ++k
  CCE30131.1  877 VALDTEFVAIRQpeiemnsdgereTIRPIVYALARTSVVRGQGenAGLPFIDDYIAIQEP--IVDYLTSYSGITRQDLDPRLSKHSLLP-LKLAYKK 970 
                  7899999999999999999999887788889*********99999***************..***********************9999.9999999 PP

                  HTCCCETTTCEEEESSHHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTTCHSSSS.TSSHHHHHHHHHHHH CS
     RNase_T   84 lallvahnaafdvgflraadkrilkkevpkrnqfldtlildkatlkelartsldklaeklgleedgr.aHrAldDaeataklf 165 
                  l++l + + + ++g++ ++d+r+++++vp  +q++dt++l+  + + ++  sl++la++l++e ++   H++++D ++++kl+
  CCE30131.1  971 LWVLLNLG-CKFLGHGLKQDFRVINIHVP-KSQIIDTIDLFFLKTRLRKL-SLAFLAWYLLKEDIQLeTHDSIEDSRTALKLY 1050
                  99999887.********************.999***********988887.*****************************997 PP

>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.1e-07    0.0048       2     247 ..     489     808 ..     488     866 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.1e-07
                 EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGG..GTSSSTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
         UCH   2 GlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkellkskskavsPkklkktlsklaks..fsgykqq 98 
                 Gl+    ++y ns+lQ++  +p +r++ l+ + ++  s+                l+++l  lf  l+k   ++ + ++l+k+ls+  +   +   +  
  CCE30131.1 489 GLETHISNSYANSLLQIMHFTPLIRNLALQHAATACLSEIC--------------LLCELGFLFDMLQKADGSICQATNLLKALSSHPEAgpMGLLEED 573
                 677777889*************999*****55555555444..............*********999999999************99999755444444 PP

                 EHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE.................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................... RF
         UCH  99 DaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks.................................................... 145
                      l+ +L++l + + +  +  + +++ ++ +s +++++ ++ +s                                                    
  CCE30131.1 574 PRSASLNLMLQSLTRFFLS--KIVTDYESVSSASSAMEQVLATSATSlirctncrseytrpgstyvndllyppfkpsgrnakaprvtfsqvlkgsiere 670
                 4567799999999999988..45555999999999999999999999999999********************************************** PP

                 ..................EEEEEEB-SEEEEEEESEEETEEEEE--SEEB--SEEE-G...........GGBSS-BTTS-TCS-BEEEEEEEEEE..SC CS
                 ..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxx..xx RF
         UCH 146 ..................klklkrlPeiLiihlkRfsynssksKlntkvefpeeldls...........sylaeekkkkteekkkYeLiavvvHs..Gs 213
                                   + ++++lP++L+++   ++ ++++   +t+   pee+ +            + l+ + ++  ++ + Y+ i++ + +  G 
  CCE30131.1 671 ttskgwcsrcqryqtiaaRKTIHSLPAVLMLNTR-ITSHENRMLWSTPGWLPEEIGIIveqgqffcyegEDLQLHLQRGMHNITVYSVIGMAINIenGP 768
                 *******************************975.66655546667777777766666666666555554455555566666677***99887652267 PP

                 TTSEEEEEEEE.......CTTTTEEEEEETTEEEEE-HHCC CS
                 xxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 214 lssGHYvayik.......nekngkWykydDetvkevkeeee 247
                 +++ H v++++       ++++++W  ++D  v +v++e e
  CCE30131.1 769 TQKPHLVSMVNvahaepqASQQSQWHLFNDFLVRPVSAE-E 808
                 899999997776555555555566*******99999977.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 7808.65
//
Query:       CCE30132.1  [L=301]
Description: uncharacterized protein CPUR_03980 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-06   28.6   0.1    3.3e-06   27.7   0.1    1.5  1  Methyltransf_25  Methyltransferase domain
    9.4e-05   22.2   0.0    0.00012   21.9   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    0.00028   21.5   0.1    0.00078   20.0   0.1    1.7  2  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.012   16.4   0.0      0.023   15.4   0.0    1.5  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   7.3e-10   3.3e-06       2      96 ..     117     218 ..     116     218 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 7.3e-10
                      EEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBC.....CGBSSSTTTEEEEEEEST.GGGSSHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeegl.nvefvqgda.....edlpfedgsfDlvvssga.lhhlsdedlekalk 87 
                      Ld+Gc  G+++++l + + + +++ g+D+ ++++++    +++++   ++fv+gd+      +l+  ++++ ++++ g+ +h+++ +++  + k
       CCE30132.1 117 LDVGCCVGQVLRQLRHDGvQGSQLFGTDVHSKFVDIGYDLFQDHDSiGATFVVGDMldpedAQLDVLSRKVTIIYA-GSfFHLFNWSQQLCVGK 209
                      9***************98746********************996656*********66533337789999999999.88788899998888888 PP

                      HHHHHEEEE CS
  Methyltransf_25  88 eiarvLkpg 96 
                      ++   Lk+g
       CCE30132.1 210 RLVGFLKEG 218
                      887777765 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.8e-08   0.00012       5      84 ..     114     189 ..     110     261 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.8e-08
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl 84 
                        +lD+GC  G+ + +l +   ++++++G D   + +       q++ +  ++F +gd+ + e    d++ D++  + ++
       CCE30132.1 114 DAFLDVGCCVGQVLRQLRHDGVQGSQLFGTDVHSKFVDIGYDLFQDHDSIGATFVVGDMLDPE----DAQLDVLSRKVTI 189
                      578***************99999**************************************44....5889997666444 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         2     9e+03      19      37 ..      42      59 ..      33      69 .. 0.67
   2 !   20.0   0.1   1.7e-07   0.00078       1      74 [.     117     199 ..     117     218 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2
                     SEEEEEES-HHHHHHHHHH CS
  Methyltransf_11 19 arvvgvDlskemlklakek 37
                     +rvv++D+ +  +++a+++
       CCE30132.1 42 RRVVCFDI-PSSRRRAQDR 59
                     78999996.4445555555 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1.7e-07
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCC.....TSS-TT-EEEEEEES-CCC- CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl.kvefvvadaek.....lpfednsfDlvvssevlhhv 74 
                      LdvGc+ G+++++l + g   ++++g+D+  +++++  +  ++ +    +fvv+d+ +     l + + ++ ++++ +++h +
       CCE30132.1 117 LDVGCCVGQVLRQLRHDGvqgSQLFGTDVHSKFVDIGYDLFQDHDSiGATFVVGDMLDpedaqLDVLSRKVTIIYAGSFFHLF 199
                      8**************888888*************999888888877877899**99962223355555555555555555555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   5.2e-06     0.023       1      79 [.     117     199 ..     117     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.2e-06
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhl 79 
                      L++Gc +G++lr l+ +  +++++ g+D+++++++     +++++   +++v  + ld +d +      ++ +++a +++h +
       CCE30132.1 117 LDVGCCVGQVLRQLRHDGvQGSQLFGTDVHSKFVDIGYDLFQDHDSIGATFVVGDMLDPEDAQLDvlsRKVTIIYAGSFFHLF 199
                      8*****************9999999*********9999999998888888888888888777666777777777787877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2364.23
//
Query:       CCE30133.1  [L=733]
Description: uncharacterized protein CPUR_03981 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-09   36.7   9.7    4.9e-09   36.2   9.7    1.3  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.036   13.1   0.1       0.08   12.0   0.1    1.6  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   9.7   5.5e-13   4.9e-09       1      39 [.     174     216 ..     174     217 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 5.5e-13
                 SS-HHHHHCT---ST....SSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   1 haCdnCrkkKvKCda....kkPaCsnCkklnleCtfysesskr 39 
                 +aCd+Cr+kK+KCda    + P Cs+C++ + +C f + ++kr
  CCE30133.1 174 RACDECRRKKIKCDAqsdtGDPPCSSCARASIPCLFSRVPQKR 216
                 69*************88885555************88887776 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     9e-06      0.08      87     178 ..     426     512 ..     357     517 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9e-06
  Fungal_trans  87 pssslwilqsLlllelyektssdralher.hhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpplldd 178
                    ++++ + q+Ll+l +   ++   +l  +  +gva  la +++L + +s   ++         +    R+ww+   +D++ a  +G+pp +++
    CCE30133.1 426 RATDIVHAQTLLMLIIDADWRAASTLPFLlARGVA--LANTMKLWKLSSADVNS----ENDSYEHLCVRIWWSLVLMDRWQAAGTGHPPQIPE 512
                   44557788888888888888887666666678888..88888887776666632....4444457788*********************6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 5351.42
//
Query:       CCE30134.1  [L=293]
Description: related to transcription activator CUP2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   11.7   0.0       0.17   11.1   0.0    1.2  1  Lyx_isomer  D-lyxose isomerase


Domain annotation for each model (and alignments):
>> Lyx_isomer  D-lyxose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.6e-06      0.17     159     193 ..     227     261 ..     209     284 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.6e-06
  Lyx_isomer 159 GesitlepglyHkfwaekgkgkvlvgevstvndDe 193
                 G+s  l+   y +f++++++++v vg +s+v +D 
  CCE30134.1 227 GSSTDLTSIDYDSFYGKNSDSNVAVGTISMVEEDP 261
                 89999**************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2171.01
//
Query:       CCE30135.1  [L=68]
Description: uncharacterized protein CPUR_03983 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       111  (0.00619109); expected 358.6 (0.02)
Passed bias filter:                       89  (0.00496402); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 520.06
//
Query:       CCE30136.1  [L=113]
Description: uncharacterized protein CPUR_03984 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       190  (0.0105974); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 877.50
//
Query:       CCE30137.1  [L=1463]
Description: related to phytochrome [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-30  103.5   0.0    7.9e-29  100.3   0.0    2.2  2  PHY           Phytochrome region
    4.8e-19   68.9   0.1      6e-18   65.4   0.0    2.4  2  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    2.7e-17   62.9   0.1    3.5e-16   59.3   0.1    2.6  1  Response_reg  Response regulator receiver domain
    4.5e-13   49.0   2.3      3e-12   46.4   1.2    2.7  2  HisKA         His Kinase A (phospho-acceptor) domain
    8.8e-13   49.0   0.0    3.7e-12   47.0   0.0    2.1  1  GAF           GAF domain
    1.9e-08   34.9   0.0      7e-08   33.1   0.0    2.0  2  PAS_2         PAS fold
  ------ inclusion threshold ------
      0.042   13.7   0.0      0.097   12.5   0.0    1.6  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik


Domain annotation for each model (and alignments):
>> PHY  Phytochrome region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.0   3.1e-32   7.9e-29       6     170 ..     635     801 ..     630     814 .. 0.94
   2 ?    0.4   0.0      0.14   3.5e+02       3      52 ..     854     903 ..     852     957 .. 0.88

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 3.1e-32
                 HHHHHHHHHSSSHHHHHTTTCCHHHHHTT-SEEEEEETTEEEEEESS--HHHHHHHHHHHHHTTTTSEEEESBCCCTSGGGGCC..CCCHSEEEEEEES CS
         PHY   6 eklvealareedleeglvdespnlldlvkadGaalllegklltlGetPseeairkllqwlereseeevfstdsLseayPeaaal..advasGllaisls 102
                 +kl++ + ++++    ++++s++ll+l +ad  +l ++g++  lG+  ++++  ++l  l  ++ + v++++++s+++P+++     + ++Gll ++ls
  CCE30137.1 635 RKLINTAPTHKNPSGYIIASSDDLLHLFDADFGVLSIKGETKFLGKIEQSQEALAMLVYLRMRKLTSVTASQDVSQDFPDLKYApgFQEIAGLLYVPLS 733
                 6899999999*********************************************************************88654226899********* PP

                 STTTEEEEEEE-CEEEEEEEESSSGGCCCCCCTCCCCSHHCHHHCCCCCETTEBS---HHHHHHHHHH CS
         PHY 103 skeseyllWfRpevvqtvkWgGdpekaaeaddagsrlsPRkSFeawketvrgrslpWeeveleaarel 170
                    ++++++fR+ +v++vkW+G+p ++  +d ++  l+PRkSF++wketv g+++ W+e  +e+a  l
  CCE30137.1 734 VGGHDFIVFFRRGQVNEVKWAGNPYHKTIKDGTAGLLEPRKSFKLWKETVLGKCRDWNEEQVETAAVL 801
                 *******************************9*******************************99866 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHSSSHHHHHTTTCCHHHHHTT-SEEEEEETTEEEEEESS CS
         PHY   3 sleeklvealareedleeglvdespnlldlvkadGaalllegklltlGet 52 
                 sl++++ ++lar++++ + l+   ++lldl+ka+    l+e+++  lG +
  CCE30137.1 854 SLDQEMRDNLARSHSASKSLICVINDLLDLTKAEEGQSLVENEVFDLGLC 903
                 5678899999***********************98888899999888865 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   2.3e-21     6e-18       1     110 [.     936    1061 ..     936    1063 .. 0.90
   2 ?    0.5   0.0      0.33   8.6e+02      23      55 ..    1095    1134 ..    1083    1170 .. 0.61

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 2.3e-21
                  EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE.....TEEEEEEEESSSSSTTHHHTGTCSTTCH............HCSTCHTSTSSSHHHHH CS
   HATPase_c    1 gdekrLrqiisnlvdNavkfatkageieveikase.....ddlvisveDnGiGipkedlkklfekfsq............ddstkrggggtGlGlsi 80  
                  gd++r+rq++sn++ Na+ + t++g++ ve+ +s+       + + v D+G G+++ +l+ lf  + q             +++krg+   GlGl++
  CCE30137.1  936 GDSRRVRQALSNVLANAIAH-THSGSVNVEVFVSDvrdgtALVDFVVADSGVGMSPRQLDALFRDLEQvstedldvpspdVQDRKRGTRTLGLGLAV 1031
                  79******************.9999998888885555556677789**************9998777777899999*99988999999********* PP

                  HHHHHHHTTTEEEEEEETTTEEEEEEEEES CS
   HATPase_c   81 vkklvelmgGeiwvesepgrGttftftlpl 110 
                  v ++v+ m+G+++++se+g+G++f+++lp+
  CCE30137.1 1032 VARVVRNMDGQLRLKSEEGQGSRFVIQLPF 1061
                  ****************************97 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.33
                  TTTEEEEEEEE..EE.....TEEEEEEEESSSSSTTHHHT CS
   HATPase_c   23 kageieveika..se.....ddlvisveDnGiGipkedlk 55  
                   + +++v+++a  s      ++ +i+  D G  ++++   
  CCE30137.1 1095 ASASVSVSVSAsaSAslqapQEGEITLIDRGSRVDPDTDA 1134
                  344555666654411455678***********99997655 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.1   1.4e-19   3.5e-16       1     110 [.    1303    1429 ..    1303    1431 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 1.4e-19
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH..ESEEEEESSCSSSEHHHHHHHHHHCTTT................SEEEEE CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek..vdlillDinmpgmdGlellkeireedpe................lpviil 77  
                    vl+++Ddp+++++lr+ le+ g  ev+ + +g+++ + +ke++  +d++l+D++mp +dGl+ +k+ir ++++                +p+ ++
    CCE30137.1 1303 VLVAEDDPINMKILRKRLERVGH-EVHHTVNGEDCAAVYKEKSfkFDVVLMDMQMPIVDGLTSAKMIRSTEHSqdhkghsrlaknnrhrIPIFAV 1396
                    89*********************.***************888878**********************9888333456777788888888****** PP

                    ESSTSHHHHHHHHHCTESEEEESSG-HHHHHHH CS
  Response_reg   78 tahseeedavealkagaddflsKpfdpeeLlka 110 
                    +a   e+ ++ +++ag d+ + Kp+d ++L + 
    CCE30137.1 1397 SASLMEAKKQLYVDAGFDGWILKPIDFKRLSTL 1429
                    ****************************99775 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   1.2   1.2e-15     3e-12       4      67 .]     827     889 ..     825     889 .. 0.94
   2 ?    0.2   0.0       0.3   7.8e+02       4      63 ..     932    1005 ..     930    1008 .. 0.69

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 1.2e-15
                 HHHHHHHHHHHHHHHHHHHHHHH.HHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   4 rflagvaHELrtPLsailgnaea.LkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                  +la+ aHE rtPL+ai+ ++e+ L++  +l++e +++l++ +s ++ l  +++dlLdl++ e+g
  CCE30137.1 827 LLLANSAHEVRTPLNAIINYLEIaLED--SLDQEMRDNLARSHSASKSLICVINDLLDLTKAEEG 889
                 589********************5677..8*******************************9987 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.3
                  HHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHH................HHHHHHHHHHHHCC CS
       HisKA    4 rflagvaHELrtPLsailgnaeaLkregklteelkeyletiesear................rldhlvedlLdlsr 63  
                  +f+ g +   r+ Ls +l+na a     + + +++ ++ ++++++                 +ld+l  dl + s+
  CCE30137.1  932 QFVHGDSRRVRQALSNVLANAIAHTH--SGSVNVEVFVSDVRDGTAlvdfvvadsgvgmsprQLDALFRDLEQVST 1005
                  67777788889999999999988766..355777777777777777666666666666666677777777666665 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.5e-15   3.7e-12       1     122 [.     455     615 ..     455     624 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.5e-15
                 SHHHHHHHHHHHHHHHHTESEEEEEE....................EEETTEEE...CEEEEECCEEEET.TSHHHH.......HHHHHSSSEEESTGG CS
         GAF   1 dleelldtvveelrellgadrvalyl....................pdydGlhy...dipqasrwlfmkn.grgicg.......qvlatgqplvipdst 68 
                 +l+  l+++v  ++el+g +rv++y+                    + y Glh+   dip ++r l+  n +r + +        v +t+++l +p ++
  CCE30137.1 455 NLDAFLKILVGIVKELTGFHRVMVYQfdasfngkvvtelvdtsqtvDLYKGLHFpasDIPRQARELYKLNkVRLLYDrdlesarMVCRTKEDLDVP-LD 552
                 58899********************99999999999999999999988999999***********7777754444444444444566688888888.43 PP

                 TSTTHHTT...HHHHHHHHTTESEEEEEEEEETTEEEEEEEEEESSS.....CS.HHHHHHHH CS
         GAF  69 pdprfaqy...nrrdllenmgirsslvvPlvndgelwGllvlhnpsp.....pf.treelell 122
                  +  ++++    + ++l+nm +rss+++++ + +elwGl+++h   +     +f  r  ++l+
  CCE30137.1 553 MTHSYLRAmspIHVKYLANMAVRSSMSISINAFDELWGLVSCHAYGNhgmrvSFpIRKMCRLV 615
                 444466667888899****************************95444455556666666666 PP

>> PAS_2  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   2.7e-11     7e-08       1      70 [.     255     328 ..     255     378 .. 0.74
   2 ?   -3.5   0.0       6.5   1.7e+04      43      69 ..     482     508 ..     455     513 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.7e-11
                 HHC--CCC-SEE-TTSEEEEEETT...TTEEEEEETTHHHHCSS-CCCC.TTTCCCCCSECTTHHHHCCHS-CC CS
       PAS_2   1 aylekIqrggliQPfGcllavdek...slrvlqvSeNaaemLglteekl.lgtdlralltassaalLekalsar 70 
                 ++ e+I+++g++Q fG+l+a++e+   s+ v  vSeN  ++ g t+++l   +++ ++lt+++ + L +++ + 
  CCE30137.1 255 CDDEPIHTPGAVQGFGVLIALREDsggSFSVRYVSENSGKIIGYTPKQLfRLRNFLDILTEEQQDNLLDHIDFI 328
                 899******************9997888*****************99985334555555565555555554444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.5
                 CCCCTTTCCCCCSECTTHHHHCCHS-C CS
       PAS_2  43 eekllgtdlralltassaalLekalsa 69 
                 +++ +g+ + +l++ s++++L k l++
  CCE30137.1 482 DASFNGKVVTELVDTSQTVDLYKGLHF 508
                 445589999999999999999887765 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.8e-05     0.097       4      80 ..     942    1030 ..     939    1039 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.8e-05
  HATPase_c_3    4 ekAlaelvdNsld...Adaenvkievnknr..gktgeivieDdGkGmseeelknalr.latsskeakr......kstslGkkGiGlklA 80  
                   ++Al  ++ N++    + + nv++ v++ r  ++  ++v+ D G Gms+++l+  +r l + s+e         + +++G + +Gl lA
   CCE30137.1  942 RQALSNVLANAIAhthSGSVNVEVFVSDVRdgTALVDFVVADSGVGMSPRQLDALFRdLEQVSTEDLDvpspdvQDRKRGTRTLGLGLA 1030
                   679999999*998755666678888887773344489*****************99747776666443444444455566655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.46
# Mc/sec: 9648.08
//
Query:       CCE30138.1  [L=1636]
Description: related to ABC transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-48  164.6   0.3    1.3e-25   90.5   0.0    2.8  2  ABC_tran         ABC transporter
    1.1e-27   97.0  47.5    9.4e-17   61.1  27.0    2.8  3  ABC2_membrane_3  ABC-2 family transporter protein
    2.2e-23   83.5   2.8    2.7e-05   24.1   0.0    4.4  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    1.9e-10   40.3   0.9    0.00045   19.9   0.4    3.5  3  AAA_29           P-loop containing region of AAA domain
    1.3e-09   37.8   1.6      0.023   14.1   0.0    4.1  3  SMC_N            RecF/RecN/SMC N terminal domain
    1.1e-05   26.0   5.4      0.025   15.1   0.3    2.5  2  AAA_23           AAA domain
    9.8e-05   22.3   0.3        0.3   11.0   0.0    2.6  2  RsgA_GTPase      RsgA GTPase
    0.00076   19.9   0.1       0.99    9.8   0.0    2.9  2  AAA_16           AAA ATPase domain
    0.00081   19.0   0.7       0.72    9.4   0.1    2.4  2  AAA_27           AAA domain
     0.0011   18.7   0.0       0.64    9.7   0.0    3.1  3  AAA_15           AAA ATPase domain
     0.0025   17.5   2.3        1.4    8.5   0.1    3.2  3  AAA_30           AAA domain
     0.0078   15.5   0.9        3.9    6.7   0.0    2.5  2  Zeta_toxin       Zeta toxin
  ------ inclusion threshold ------
      0.013   16.0   0.0       0.56   10.8   0.0    3.1  2  Arc_PepC_II      Archaeal Peptidase A24 C-terminus Type II
      0.013   16.1   0.0      0.065   14.0   0.0    2.2  2  DUF4162          Domain of unknown function (DUF4162)
      0.021   15.4   0.0         12    6.4   0.0    2.7  2  AAA_18           AAA domain
      0.028   14.7   0.1        4.3    7.6   0.0    2.8  2  AAA_22           AAA domain
      0.033   14.4   0.5        3.5    7.9   0.5    2.5  2  AAA_28           AAA domain
      0.035   13.7   0.6        5.3    6.6   0.2    2.3  2  SRP54            SRP54-type protein, GTPase domain
      0.085   11.8   1.3       0.48    9.3   0.1    2.2  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
       0.11   12.2   0.5         19    4.9   0.1    2.5  2  MukB             MukB N-terminal
        0.2   10.8   0.2        1.6    7.8   0.1    2.1  2  G-alpha          G-protein alpha subunit
        0.3   11.2   2.1        9.2    6.3   0.0    2.4  2  DUF87            Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.2   1.4e-22   1.2e-19       2     135 ..     499     630 ..     498     632 .. 0.94
   2 !   90.5   0.0   1.6e-28   1.3e-25       1     136 [.    1280    1422 ..    1280    1423 .. 0.93

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 1.4e-22
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 +++sl+  +g+++a++G nG+GKSt l ++agl++ t+G+i++d            r  +g+ pq++ l+++ltv+e+             +s+ee+++
  CCE30138.1 499 SELSLQAGKGQIIALLGANGSGKSTTLDAIAGLHRLTSGSITID-----------GRGGLGIAPQKNVLWDDLTVEEHlaifnrlkapdaqASKEEMHD 586
                 5789999**********************************888...........699******************************99999999999 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                 +++ ++l  +++  +    ++LSgGqk++++l  +l   ++l ++DE 
  CCE30138.1 587 LVKAIDLLPKRKAFA----KTLSGGQKRKLQLGIMLTGGSTLCCVDEV 630
                 999999999888887....****************************6 PP

  == domain 2  score: 90.5 bits;  conditional E-value: 1.6e-28
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...........esdee 84  
                  ++nv++ +k+ge+ a++G+nGaGKSt ++l+ g +kp  + G++ +++k++ + +l  +r ++gv+pq + l++ + vre+           + + +
  CCE30138.1 1280 VDNVTFGIKRGEVFALLGPNGAGKSTTISLIRGDMKPsrNGGDVIVEDKSVIH-DLAAARTHLGVCPQIDALDQMT-VREHlefyarvrgisDVEHN 1374
                  58***********************************88899**999999988.9**************8888777.*******9999996666666 PP

                  HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136 
                  ++++l+ +gl+ ++ +      + LSgG k++++l  al+ +p+++llDEp+
  CCE30138.1 1375 VSAILQAVGLEAFASRMG----YALSGGNKRKLSLGIALMGNPTVVLLDEPS 1422
                  ************999987....*****************************7 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.5       1.4   1.1e+03       4      21 ..      27      44 ..       7      57 .. 0.51
   2 !   41.9  11.0   7.9e-14   6.4e-11      57     344 ..      55     436 ..      25     437 .. 0.66
   3 !   61.1  27.0   1.2e-19   9.4e-17       7     344 ..     842    1217 ..     836    1218 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
  ABC2_membrane_3  4 liitlllPiilvlllgli 21
                     li+ ++lP++l +++ ++
       CCE30138.1 27 LIMAFVLPLVLSAFFSFA 44
                     334444444444444444 PP

  == domain 2  score: 41.9 bits;  conditional E-value: 7.9e-14
  ABC2_membrane_3  57 svelvyevdseeeakkalkngdidgilvipkgfskdll........................................................ 94 
                       ++ v++v s+++a +a ++ + d ++ i++g+s+                                                           
       CCE30138.1  55 GFSPVQPVRSLSNAFDAARSSGRDKLVLINNGYSRGDIdqvldkvanaattdssmklarldteddlatecrsslrgvtscfaavvmrsspnegp 148
                      3445566677777777777777777777777777666666666666666666666777777777778999999999999999999998888888 PP

  ABC2_membrane_3  95 .....kgesatvtvlinssnlnss.....kailna.lnsllqqlnasalv.......lqseatstsaninvestql........eeelsnvasf 162
                           ++ ++++ ++++   + +      ++i+   l+ +    +as ++        + e + ts++                e + + +++f
       CCE30138.1 149 gglwnYTIRTDAAFWSEPVKFDVDksdnvQQIYILpLQRFVDLAIASLNNpnsdplaRTDELAFTSIT-------QeqrevkvrEAYHKAIVNF 235
                      88888555555555554444422233333445554555544444444444444333333333333333.......3333555578888****** PP

  ABC2_membrane_3 163 lvgliliilifitasfiavsiveEkesrikelqlvsgv..splqywlskilgdflvyllqll.lill....lafglgipfgnlglllllfllfg 249
                      +++++++ +++it+  ++ ++++E+es++ +l+  + v  +p+    ++i++  l + + ++  +++    + +g  +p +n  ++l++ l+ g
       CCE30138.1 236 MAVAFIANILWITYH-LTGFMATERESGMSQLIDAMIVvrRPWMAQAARIIAHHLSFSILYApAWIIgsviIRYG-VFPNTNTAIVLFFNLFAG 327
                      ***************.6669**********999888445577777777777777777777764344445324666.45555777777777777* PP

  ABC2_membrane_3 250 layialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllrli...........tgdplwe........ 324
                      la+++++ l+ s+fk++    i +++villl+++  +l   +   +++++++ ++  +++ ++l+ ++                 e        
       CCE30138.1 328 LALASMSILFASFFKKAQLSGITAILVILLLGILAQALTQPK--TGPVAILSVLFTPCTFVYFLTLMArfertnratnlV-----Enppnspwq 414
                      *****************9988889999998888888888544..366666666777777777776666777776655550.....244444454 PP

  ABC2_membrane_3 325 il..lsliilalfavvylllal 344
                      i     ++il++ ++vy l+a+
       CCE30138.1 415 IPgiVFFVILIVHILVYPLIAA 436
                      4334788888888888888876 PP

  == domain 3  score: 61.1 bits;  conditional E-value: 1.2e-19
  ABC2_membrane_3    7 tlllPiilvlllglifsnsve....ddentpi........avvdedn.............sslsqqlvealeaspsve........lvyevd 65  
                        +llPi+ ++l  l +  ++     ++e+ ++         + d+++             s  s  l+ +++ s s +        +++ v+
       CCE30138.1  842 AFLLPIFAAALTSLYVRGKTQtgctAAEQASTsstedaftQIADDSRivflagptarlstSAISDLLQPIFNGSRSGSimgsaalkNIQLVE 933 
                       56666666666666665433322322333332222333334444444555555555555555555555555555544455555555677777 PP

  ABC2_membrane_3   66 seeeakkalkngdidgilvipkgfskdllkgesatvtvlinssnlnss...kailnalnsllqqlnasalvlqseatstsaninvestql.e 153 
                       + +e ++ +k++ +     ++ g+s+      s +   +  +   +ss   +++l  ++                   t+++i ++  +   
       CCE30138.1  934 TFDEWQQYIKDNYAKVTTALWLGDSN------SNPTFGWAANLFITSSitaQQFLDVIA-------------------TNTSIATTWSSFdI 1000
                       77777777777755555555555543......223333333333333311122233322...................33333333333323 PP

  ABC2_membrane_3  154 eelsnvasflvgliliil.ifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilllafglgipfg..nlglll 242 
                         ++++ + l  +i++ l +  +++f++ +   E+++ ++ lq++ gv+p+ +w +  l+df+  l+ ++++++++ g  i+    +l++++
       CCE30138.1 1001 PFNPGIGDALNLVIYMGLaLACYPAFFSLYPSVERRKFVRALQYSNGVRPFPLWAAYTLFDFIFVLIASAIMTAVWAG--ISSIwfHLVYVF 1090
                       33355555544433322223334444444555599999****************************************..777777****** PP

  ABC2_membrane_3  243 llfllfglayialgyllsslfkns......etaqilifivilllsgffgglfp.ledlpsalkwifsiiPffapglgllrli...tgdplwe 324 
                       ++f+l+gla+i ++y++s ++k++      ++a++++f++  l+  +++++++ +++++s+l +  ++i  fap+ + +r +   t  +l++
       CCE30138.1 1091 VVFFLYGLASILFSYVISLFTKTQlgtfawAAAYQAVFFLGYLIAYICIVTYVqVNKIDSTLLVSHFVISVFAPICSATRALflaT--NLFS 1180
                       *****************************999*******************999********999999988888888888884321..3444 PP

  ABC2_membrane_3  325 .................illsliilalfavvylllal 344 
                                        ++ ++++l+l +v++++l l
       CCE30138.1 1181 tacdgnelsthpgslkaYGGPILYLILQCVALFALLL 1217
                       688888899999****999***************987 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.2   9.2e-08   7.5e-05       2      37 ..     511     552 ..     510     567 .. 0.73
   2 !   24.1   0.0   3.3e-08   2.7e-05     237     297 ..     604     660 ..     581     661 .. 0.88
   3 !   10.2   0.3   0.00058      0.47       2      20 ..    1293    1311 ..    1292    1357 .. 0.83
   4 !   23.2   0.0   6.5e-08   5.3e-05     236     300 ..    1394    1454 ..    1364    1457 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 9.2e-08
      AAA_21   2 nvliGpNgsGKSnLLdaldllarl......drdvegltdels 37 
                  +l G+NgsGKS+ Lda+ +l+rl      ++   gl++ ++
  CCE30138.1 511 IALLGANGSGKSTTLDAIAGLHRLtsgsitIDGRGGLGIAPQ 552
                 689******************998666665444444444444 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 3.3e-08
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 lS G+kr l l  +l       +l ++DE+ +gL+P   r+++++l +++  +  +i+tTH
  CCE30138.1 604 LSGGQKRKLQLGIMLTGGS---TLCCVDEVSSGLDPLSRRKIWDILLSERG-KRTLIMTTH 660
                 79999**966666666544...************************88877.99******* PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00058
      AAA_21    2 nvliGpNgsGKSnLLdald 20  
                   +l GpNg+GKS+ + +++
  CCE30138.1 1293 FALLGPNGAGKSTTISLIR 1311
                  689************9995 PP

  == domain 4  score: 23.2 bits;  conditional E-value: 6.5e-08
      AAA_21  236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpl 300 
                   lS G kr l l  al   +   +++l+DEp +gL+ ++ r  ++ l ++   g  ++ltTHS +
  CCE30138.1 1394 ALSGGNKRKLSLGIALMGNP---TVVLLDEPSSGLDAAAKRIMWRTLAATVP-GRSILLTTHSME 1454
                  5899*************999...**************9999999******99.**********75 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.13   1.1e+02      30      45 ..     258     273 ..     247     280 .. 0.83
   2 !   19.9   0.4   5.6e-07   0.00045      22      43 ..     507     529 ..     499     533 .. 0.84
   3 !   13.5   0.1   5.4e-05     0.044      13      39 ..    1281    1307 ..    1277    1311 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.13
      AAA_29  30 psGsGKSTllDAiqal 45 
                 + +sG S l+DA++++
  CCE30138.1 258 ERESGMSQLIDAMIVV 273
                 578**********987 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 5.6e-07
      AAA_29  22 kg.atlltGpsGsGKSTllDAiq 43 
                 kg ++ l G++GsGKST lDAi+
  CCE30138.1 507 KGqIIALLGANGSGKSTTLDAIA 529
                 456889***************97 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 5.4e-05
      AAA_29   13 dghtieidlkgatlltGpsGsGKSTll 39  
                  d+ t+ i++ +++ l Gp+G+GKST +
  CCE30138.1 1281 DNVTFGIKRGEVFALLGPNGAGKSTTI 1307
                  66788999777**************76 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   9.6e-05     0.079      25      44 ..     509     528 ..     500     536 .. 0.88
   2 !   14.1   0.0   2.9e-05     0.023     124     197 ..     591     660 ..     567     676 .. 0.77
   3 !    6.0   0.1    0.0085       6.9      25      44 ..    1291    1310 ..    1267    1469 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.6e-05
                 SEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAi 44 
                 ++ a++G+NGSGKs  ldAi
  CCE30138.1 509 QIIALLGANGSGKSTTLDAI 528
                 67899**************9 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.9e-05
                 HHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivisl 197
                  +ll++ +   ++LSgG+k  + l ++        + l+++De+ + LD   ++k+ ++l +++ +  +i++++
  CCE30138.1 591 IDLLPKRKAFAKTLSGGQKRKLQLGIM----LTGGSTLCCVDEVSSGLDPLSRRKIWDILLSERGKRTLIMTTH 660
                 345555555556*******97666665....67899**********************9998888888888886 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0085
                  SEEEEEESTTSSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxx RF
       SMC_N   25 sftaivGpNGSGKsnlldAi 44  
                  ++ a++GpNG+GKs  +  i
  CCE30138.1 1291 EVFALLGPNGAGKSTTISLI 1310
                  466899*******9877655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.3   3.1e-05     0.025      20      40 ..     509     529 ..     499     531 .. 0.86
   2 !   12.6   0.7   0.00018      0.14      16      39 ..    1284    1310 ..    1271    1312 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.1e-05
      AAA_23  20 gltlItGpNGaGKTTildAik 40 
                  + ++ G NG+GK+T ldAi 
  CCE30138.1 509 QIIALLGANGSGKSTTLDAIA 529
                 58899**************96 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00018
      AAA_23   16 dF...skgltlItGpNGaGKTTildAi 39  
                   F      ++++ GpNGaGK+T +  i
  CCE30138.1 1284 TFgikRGEVFALLGPNGAGKSTTISLI 1310
                  344444469*************99777 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0     0.002       1.6      98     131 ..     507     540 ..     457     546 .. 0.82
   2 !   11.0   0.0   0.00037       0.3      81     124 ..    1271    1315 ..    1246    1328 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.002
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktgevs 131
                  k+++++l+G  G GKSt ++a+++ ++l  g++ 
   CCE30138.1 507 KGQIIALLGANGSGKSTTLDAIAGLHRLTSGSIT 540
                  569*******************998888777775 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00037
                   E--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase   81 lvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpele 124 
                   + s  +++++++++  +k  ++ +l+G+ G+GKSt i  ++++++
   CCE30138.1 1271 TKSFGKNTAVDNVTFGIKRgEVFALLGPNGAGKSTTISLIRGDMK 1315
                   445566788889999998889****************99998764 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0012      0.99      20      45 ..     504     529 ..     497     609 .. 0.83
   2 !    6.8   0.0    0.0096       7.8      23      52 ..    1289    1320 ..    1278    1421 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
      AAA_16  20 rsgrpelvllsGesGvGKsslvrell 45 
                  +g ++++ l G+ G+GKs+ +++++
  CCE30138.1 504 QAGKGQIIALLGANGSGKSTTLDAIA 529
                 678889****************9997 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0096
      AAA_16   23 rpelvllsGesGvGKsslvrellralekd..g 52  
                  r+e+  l G+ G GKs+ +  ++  ++ +  g
  CCE30138.1 1289 RGEVFALLGPNGAGKSTTISLIRGDMKPSrnG 1320
                  457899*************9999888777442 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00089      0.72      18      49 ..     500     531 ..     496     532 .. 0.89
   2 !    7.7   0.0     0.003       2.4      10      44 ..    1273    1308 ..    1265    1312 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00089
      AAA_27  18 sldfsaeeadlhliyGpNEAGKstalrAisdl 49 
                 +l+++a++ ++  ++G+N +GKst+l+Ai  l
  CCE30138.1 500 ELSLQAGKGQIIALLGANGSGKSTTLDAIAGL 531
                 68889999999999**************9865 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.003
      AAA_27   10 ryGkftdr.sldfsaeeadlhliyGpNEAGKstalr 44  
                   +Gk t   +++f+ ++ ++  ++GpN AGKst+++
  CCE30138.1 1273 SFGKNTAVdNVTFGIKRGEVFALLGPNGAGKSTTIS 1308
                  57776653378999999999999**********986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00078      0.64      25      44 ..     510     529 ..     498     584 .. 0.86
   2 ?    3.2   0.1      0.07        57      25      43 ..    1292    1310 ..    1282    1329 .. 0.89
   3 ?    1.3   0.0      0.27   2.2e+02     324     365 ..    1413    1452 ..    1409    1454 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00078
      AAA_15  25 ltvliGkNnsGKSsileald 44 
                 +  l G+N+sGKS+ l+a+ 
  CCE30138.1 510 IIALLGANGSGKSTTLDAIA 529
                 78899*************96 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.07
      AAA_15   25 ltvliGkNnsGKSsileal 43  
                  +  l G+N++GKS+ + ++
  CCE30138.1 1292 VFALLGPNGAGKSTTISLI 1310
                  67899**********9988 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.27
      AAA_15  324 nvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365 
                  + ++l++EP   L   a+++++++l+  +   +  +++tTHS
  CCE30138.1 1413 PTVVLLDEPSSGLDAAAKRIMWRTLAATVPGRS--ILLTTHS 1452
                  668899************************997..******9 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0018       1.4      17      45 ..     507     535 ..     500     631 .. 0.85
   2 !    7.4   0.0    0.0041       3.3      18      43 ..    1290    1315 ..    1278    1422 .. 0.86
   3 ?   -3.5   0.1         9   7.3e+03      45      73 ..    1441    1470 ..    1429    1482 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0018
      AAA_30  17 gdrvavltGpAGtGKttalkalreaweaa 45 
                 + ++ +l G+ G+GK+t+l a++ +++  
  CCE30138.1 507 KGQIIALLGANGSGKSTTLDAIAGLHRLT 535
                 4568999***************9998866 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0041
      AAA_30   18 drvavltGpAGtGKttalkalreawe 43  
                    v +l Gp G+GK+t+++ +r  ++
  CCE30138.1 1290 GEVFALLGPNGAGKSTTISLIRGDMK 1315
                  458899*************9986554 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 9
      AAA_30   45 a.ggrviglAptgkaAkvLaeelgieasti 73  
                    g+++++ +++ + A++La  +gi a+++
  CCE30138.1 1441 VpGRSILLTTHSMEEADALAGRAGIMARRM 1470
                  347899999999999999999999988765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.2    0.0053       4.3      17      50 ..     509     542 ..     497     544 .. 0.84
   2 !    6.7   0.0    0.0048       3.9      21      43 ..    1295    1319 ..    1281    1329 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0053
  Zeta_toxin  17 klillgGqpGAGKselaellkdelerqgnvvrld 50 
                  +i l G+ G+GKs+++++++  ++ +++ +++d
  CCE30138.1 509 QIIALLGANGSGKSTTLDAIAGLHRLTSGSITID 542
                 678899**************99999888888887 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0048
  Zeta_toxin   21 lgGqpGAGKselaellkdele..rq 43  
                  l G  GAGKs++++l++ +++  r+
  CCE30138.1 1295 LLGPNGAGKSTTISLIRGDMKpsRN 1319
                  66889***************96533 PP

>> Arc_PepC_II  Archaeal Peptidase A24 C-terminus Type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.64   5.2e+02      41      73 ..     219     251 ..     203     255 .. 0.83
   2 ?   10.8   0.0   0.00069      0.56      10      87 ..     750     855 ..     746     859 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.64
  Arc_PepC_II  41 svekeldeelrkelkkykkkglieetvWvtygv 73 
                  ++e +++e ++k + +++   +i +  W+ty +
   CCE30138.1 219 QREVKVREAYHKAIVNFMAVAFIANILWITYHL 251
                  45667889***********************75 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00069
  Arc_PepC_II  10 yrvkvkellkkflflleefeekdgkikrkfisvekeld.............................eelrkelkkykkkglieetvWvtygvPflip 78 
                  yr ++ ++++ fl l ee+ +++++ ++ ++++  e +                             + +++ +  ++k+ ++ ++ W+ y v fl+p
   CCE30138.1 750 YRFSGPTIEDVFLQLAEEVRDQEESRES-SARMAVESQrfpdkdvfsqdessqqvspglklldgkrvSYWKQAVILFRKRIVVLKRNWILYLVAFLLP 846
                  78888899999*******9998886443.445554555578899**********************9******************************* PP

  Arc_PepC_II  79 itaGfiial 87 
                  i+a  +++l
   CCE30138.1 847 IFAAALTSL 855
                  ****99997 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   7.9e-05     0.065       1      80 [.     684     764 ..     684     765 .. 0.77
   2 ?   -2.2   0.0       8.5     7e+03      54      81 .]    1582    1609 ..    1577    1609 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.9e-05
                 E-HHHHHTTS.-SSEEEEE-------..---EEEE-TT..S-EEEEE-----------------EEEEEEEE---HHHHHHHH CS
     DUF4162   1 GtleeiKrsy.gknrieveadaeelleepgveeveeeg..gelelkledeeaanellkaltsgveirsFeeeePsLndIFiek 80 
                 G+  ++K+++ g+ r++v+ +   + ++p+v+ v +++  + ++   ++++ a +++++l +  +i  ++   P+++d+F+++
  CCE30138.1 684 GSSVQLKDQFgGGYRVHVQ-KSPGVTNLPSVQGVHRKDafDLVTYVAPTSQLAAQVIRTL-DAQNISDYRFSGPTIEDVFLQL 764
                 5666899999666666677.44555667777777666665667777777***********.8889****************96 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 8.5
                  --------EEEEEEEE---HHHHHHHHH CS
     DUF4162   54 lkaltsgveirsFeeeePsLndIFiekv 81  
                  l++ ++ + i ++++ +  L+ +F+  v
  CCE30138.1 1582 LEENKRLLGIGHYSVSPTGLDQVFLSIV 1609
                  555556677999************9876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.015        12       1      22 [.     511     532 ..     511     596 .. 0.73
   2 ?    6.0   0.0     0.021        17       3      64 ..    1295    1359 ..    1294    1396 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.015
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 I+l G+ G+GK+t  ++++ ++
  CCE30138.1 511 IALLGANGSGKSTTLDAIAGLH 532
                 899************9997665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.021
      AAA_18    3 ltGtpGvGKttlakeLskrlgf..gvnlrdvakenglllevdpe...aldeskrldedkldklldal 64  
                  l G+ G+GK+t    ++    +  ++n +dv+ e+ +++ + ++    l  + ++d   ++ + + l
  CCE30138.1 1295 LLGPNGAGKSTTISLIRGD--MkpSRNGGDVIVEDKSVIHDLAAartHLGVCPQIDALDQMTVREHL 1359
                  78**************555..4459999999999999888888866644444444444444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0053       4.3       4      29 ..     507     532 ..     504     668 .. 0.84
   2 ?    4.0   0.0      0.07        57       6      24 ..    1291    1309 ..    1287    1331 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0053
      AAA_22   4 tagilvvtGesGtGKTtllrrlleql 29 
                 + +i+++ G  G+GK+t+l  ++  +
  CCE30138.1 507 KGQIIALLGANGSGKSTTLDAIAGLH 532
                 5789**************99887655 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.07
      AAA_22    6 gilvvtGesGtGKTtllrr 24  
                   + ++ G+ G+GK+t++  
  CCE30138.1 1291 EVFALLGPNGAGKSTTISL 1309
                  567899*********9875 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.5    0.0043       3.5       2      20 ..     511     529 ..     510     545 .. 0.87
   2 ?    3.9   0.0     0.071        58       2      20 ..    1293    1311 ..    1292    1362 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0043
      AAA_28   2 ivitGgestGKTtlleaLa 20 
                 i+++G+ ++GK+t+l a+a
  CCE30138.1 511 IALLGANGSGKSTTLDAIA 529
                 89*************9998 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.071
      AAA_28    2 ivitGgestGKTtlleaLa 20  
                  ++++G+ ++GK+t+++ + 
  CCE30138.1 1293 FALLGPNGAGKSTTISLIR 1311
                  689***********98776 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2    0.0065       5.3       3      25 ..     510     532 ..     508     541 .. 0.83
   2 ?    5.1   0.0     0.019        16       3      19 ..    1292    1308 ..    1290    1319 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0065
                 EEEEEESTTSSHHHHHHHHHHHH CS
       SRP54   3 villvGlqGaGKTttlaKLaall 25 
                 +i+l+G +G+GK ttl  +a l 
  CCE30138.1 510 IIALLGANGSGKSTTLDAIAGLH 532
                 899************99888655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.019
                  EEEEEESTTSSHHHHHH CS
       SRP54    3 villvGlqGaGKTttla 19  
                  v++l+G++GaGK tt++
  CCE30138.1 1292 VFALLGPNGAGKSTTIS 1308
                  789************96 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00059      0.48      19      50 ..     498     529 ..     486     538 .. 0.87
   2 ?    0.7   0.1      0.26   2.1e+02      28      50 ..    1289    1311 ..    1277    1326 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00059
                 HHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB  19 lerllakaGraqvvGltGvPGaGkstlvealg 50 
                 +++l+ +aG+ q + l G  G+Gkst+++a++
  CCE30138.1 498 VSELSLQAGKGQIIALLGANGSGKSTTLDAIA 529
                 5678899*********************9975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.26
                  -SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB   28 raqvvGltGvPGaGkstlvealg 50  
                  r +v  l G  GaGkst+++ + 
  CCE30138.1 1289 RGEVFALLGPNGAGKSTTISLIR 1311
                  6678889999*********9765 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.024        19      28      46 ..     510     528 ..     507     533 .. 0.86
   2 ?    4.8   0.0     0.027        22      27      44 ..    1291    1308 ..    1280    1316 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.024
                 HHHHHS--SHHHHHHHHHH CS
        MukB  28 vttlsGgnGaGksttmaaf 46 
                 + +l G+nG+Gkstt+ a+
  CCE30138.1 510 IIALLGANGSGKSTTLDAI 528
                 67899**********9876 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.027
                  HHHHHHS--SHHHHHHHH CS
        MukB   27 lvttlsGgnGaGksttma 44  
                   v +l G nGaGkstt+ 
  CCE30138.1 1291 EVFALLGPNGAGKSTTIS 1308
                  5889***********975 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0019       1.6      26      47 ..     511     532 ..     495     540 .. 0.84
   2 ?   -0.2   0.0      0.54   4.4e+02      26      44 ..    1293    1311 ..    1277    1332 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0019
                 EEEEESTTSSHHHHHHHHHHHC CS
     G-alpha  26 llllGqseSGKsTilkqlklly 47 
                 + llG+++SGKsT+l  +  l+
  CCE30138.1 511 IALLGANGSGKSTTLDAIAGLH 532
                 88*************9998777 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.54
                  EEEEESTTSSHHHHHHHHH CS
     G-alpha   26 llllGqseSGKsTilkqlk 44  
                  + llG ++ GKsT++  ++
  CCE30138.1 1293 FALLGPNGAGKSTTISLIR 1311
                  679***********97766 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.5     0.066        53      26      43 ..     511     528 ..     508     537 .. 0.89
   2 ?    6.3   0.0     0.011       9.2      26      57 ..    1293    1325 ..    1279    1328 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.066
       DUF87  26 lAilgsTGsGKSntvavL 43 
                 +A lg  GsGKS+t   +
  CCE30138.1 511 IALLGANGSGKSTTLDAI 528
                 699***********8766 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.011
       DUF87   26 lAilgsTGsGKSntvavLleelle.kkgatili 57  
                  +A lg  G+GKS+t++++   +   ++g+ +++
  CCE30138.1 1293 FALLGPNGAGKSTTISLIRGDMKPsRNGGDVIV 1325
                  899*************99877776555557766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 1.15u 0.29s 00:00:01.44 Elapsed: 00:00:00.47
# Mc/sec: 10520.00
//
Query:       CCE30139.1  [L=498]
Description: related to transcription/repair factor TFIIH subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.9e-136  454.7   0.0   2.3e-136  454.4   0.0    1.1  1  Tfb2          Transcription factor Tfb2
    3.5e-20   72.2   1.1    6.5e-20   71.3   1.1    1.5  1  Tfb2_C        Transcription factor Tfb2 (p52) C-terminal doma
     0.0032   17.6   0.0      0.007   16.5   0.0    1.6  1  Helicase_C_3  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> Tfb2  Transcription factor Tfb2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  454.4   0.0  3.9e-140  2.3e-136       1     355 []      13     407 ..      13     407 .. 0.96

  Alignments for each domain:
  == domain 1  score: 454.4 bits;  conditional E-value: 3.9e-140
        Tfb2   1 eyleklpettlerLYkspatclaif.rlLpslakqlvmrllylekpvplsdlekwvkkeskkekeealkkLkelhilkekk.lkekkqelklnptFkks 97 
                 +yleklp+tt+++LY++p+t++aif r+Lp+lak+lvmr+ly++kp+  ++l+ w+k+++k+++++a+ +Lk lhi++ +  +kek+qe++l+++Fk+s
  CCE30139.1  13 DYLEKLPGTTFRKLYQQPSTAFAIFrRMLPHLAKTLVMRILYMPKPMLFTELDVWLKPDAKRQRDHAIATLKGLHIIQVSVpSKEKPQEMQLTTNFKNS 111
                 7****************************************************************************9987456666************ PP

        Tfb2  98 lrkaltgggeeksfgvpseeedkekvdvefLdkyakekWesilhflvgseee......eepskevlelLkasglveekeskkslkItseGFqFlLqdin 190
                 lr altggge++sfgvps+     ++d++fLd+ya++kWe+ilhf+v+s         ++p+k+v+e+L a++lv+++ + +s++It++GF+FlLq+ n
  CCE30139.1 112 LRLALTGGGEHNSFGVPSTLMVPPEIDLAFLDRYARKKWEDILHFVVSSVGYkstgdtTGPNKSVKEILIAGRLVDRRAN-GSIGITQAGFTFLLQEPN 209
                 ************************************************998888888878***************88887.9***************** PP

        Tfb2 191 aQiwtlllqylkaleerg...mdlvevlsflfqLsslelgkaYsvealsetqkemledLrdlGLvyqrkkkskrFypTrlattLts............. 273
                 aQ+wtlll +l+a+++++   +++v++lsflf L+slelg+aY+++al+e++k+ml +L d+GL+y++ ++++ F+pTrlattLts             
  CCE30139.1 210 AQVWTLLLLWLEASDTNQaagLETVDMLSFLFVLASLELGRAYDTNALTEQRKNMLPSLLDFGLIYIPPNNRSMFFPTRLATTLTSvgsslrsisdgva 308
                 *************99665324679************************************************99************************* PP

        Tfb2 274 .................sssessseskeegfiivETNfrvyAYtssplqialLslFvklkyrfpnlvvgkitresvreAlknGItadqIisyLeshahp 355
                                  ++ + +   + +g++ivETN+r+yAYt+s+lqia+L+lF+kl++rfp++v+g++tr+s+r+A++ GItadqIisy+++hah+
  CCE30139.1 309 aatavtpgtshagaatnNAWNGTLGGDGKGSVIVETNYRIYAYTQSTLQIAVLALFCKLNMRFPDMVAGRLTRNSIRQAINFGITADQIISYMAAHAHE 407
                 *************99886667788899***********************************************************************6 PP

>> Tfb2_C  Transcription factor Tfb2 (p52) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   1.1   1.1e-23   6.5e-20       1      68 []     427     492 ..     427     492 .. 0.99

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 1.1e-23
      Tfb2_C   1 DQIrLWekernRlkaeegvlyddFesqadfeevleyakelgvllwedeekrllvvkeeghesvkefik 68 
                 DQIrLW+ e +R+k++ g+l++dF++ ++f e++++a+e+gvl+w+++++ ++++++   e++++++k
  CCE30139.1 427 DQIRLWQLENERMKTTSGFLFRDFDDHKEFVETARFAEEIGVLVWKSDKSGMFFANK--YEQIRDYMK 492
                 9*******************************************************9..*******97 PP

>> Helicase_C_3  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.2e-06     0.007      38      70 ..     374     406 ..     340     414 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.2e-06
  Helicase_C_3  38 ahtyrltplSlrrAldaGltaeeiiefLerlsk 70 
                   +   rlt+ S+r+A++ G+ta++ii++++++++
    CCE30139.1 374 MVAGRLTRNSIRQAINFGITADQIISYMAAHAH 406
                   5567***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3619.47
//
Query:       CCE30140.1  [L=454]
Description: uncharacterized protein CPUR_03988 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3305.31
//
Query:       CCE30141.1  [L=344]
Description: related to mouse T10 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-68  230.3   0.0    4.2e-68  230.1   0.0    1.0  1  TANGO2     Transport and Golgi organisation 2
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.28   10.9   0.0    1.4  1  PDR_assoc  Plant PDR ABC transporter associated


Domain annotation for each model (and alignments):
>> TANGO2  Transport and Golgi organisation 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.1   0.0   4.7e-72   4.2e-68       1     252 [.       1     319 [.       1     320 [. 0.91

  Alignments for each domain:
  == domain 1  score: 230.1 bits;  conditional E-value: 4.7e-72
      TANGO2   1 MCIllftveahpkykLiLasNRDEflaRptkeaaww...eenseilsgrDlerkegGTWlGitkegrlAvLtNlrepsekek..kakkarsRGelvldf 94 
                 MCI+lft +ahp+y LiL++NRDEf+ Rpt++ +ww      +e+ls+rDl+r e+GTW+G+tk+g++AvLtN+re++++++  + ++ +sRG +v+++
  CCE30141.1   1 MCIVLFT-TAHPDYALILLDNRDEFIIRPTSRPHWWkhpATGQEVLSSRDLQRAEKGTWMGVTKSGHFAVLTNYREANTHDAshPVHGIKSRGGMVTAW 98 
                 *******.****************************7544778*********************************9944443478899********** PP

      TANGO2  95 Ltsseksseeyleelak..eakkyggFnLlvgdlk..skelayisnrskeeeelsp......gvhglSNsll..dspwpKveegkkkleelveesve.e 180
                 L +   s ++ +++l++    k +ggF++++g+l+  s  +a++snr  +++e+        ++ glSN+++  ++pwpKv++g ++l+++v++ ve +
  CCE30141.1  99 LAGLGDSVKDGVHHLVQdgGVKGVGGFSMVCGKLRknSPGIAVVSNRAGHADEVPFvahhrgETWGLSNTTFdaQAPWPKVQKGTDLLRTTVQDAVEkQ 197
                 *9999999*******9988899*************98889********65577644678999**********7777******************99977 PP

      TANGO2 181 kseeelieellellsddtllpk.deel...eeleellssifippiee...............................................akkeY 228
                 +se++l+++l++ll+++t+ p  d+ +   e +  l+++if+pp+ +                                                ++ Y
  CCE30141.1 198 ASEKDLVNSLFNLLDTNTF-PAtDPDMsfeEVTGLLRHTIFVPPLGNeahreamkeaqakgktawaedegalkaveeilqaeqpevsapgsvgfETGMY 295
                 77888*************7.444555556666778899*****99966899*******************************************889** PP

      TANGO2 229 GTrtqtvilvdkegkvtfiErtle 252
                 GT++qtv+lvd++g+v+f+Er l+
  CCE30141.1 296 GTQRQTVMLVDWQGRVKFVERALW 319
                 *********************986 PP

>> PDR_assoc  Plant PDR ABC transporter associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.2e-05      0.28      12      45 ..      39      72 ..      33      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.2e-05
   PDR_assoc 12 tlGvavLksrglfteaywYWigvgallgftiLFN 45
                  G++vL sr+l   ++  W+gv     f++L N
  CCE30141.1 39 ATGQEVLSSRDLQRAEKGTWMGVTKSGHFAVLTN 72
                569********************99999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2414.90
//
Query:       CCE30142.1  [L=463]
Description: related to salicylate hydroxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-21   74.7   0.2    6.3e-20   71.7   0.2    2.0  1  FAD_binding_3   FAD binding domain
    2.5e-12   47.1   0.1    9.5e-06   25.4   0.1    2.3  2  DAO             FAD dependent oxidoreductase
    5.6e-07   29.1   0.0     0.0095   15.2   0.2    2.4  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    7.6e-07   29.3   0.1    1.8e-06   28.1   0.1    1.6  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    2.5e-06   26.6   0.1     0.0083   15.0   0.0    2.8  3  Trp_halogenase  Tryptophan halogenase
    1.2e-05   24.7   0.1    2.1e-05   23.9   0.1    1.4  1  Thi4            Thi4 family
    0.00084   19.9   0.0      0.011   16.3   0.2    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0023   17.3   0.0       0.53    9.5   0.0    2.4  2  Amino_oxidase   Flavin containing amine oxidoreductase
     0.0028   16.8   0.2     0.0051   16.0   0.2    1.4  1  FAD_binding_2   FAD binding domain
     0.0028   16.4   0.1       0.22   10.2   0.1    2.1  2  HI0933_like     HI0933-like protein
  ------ inclusion threshold ------
      0.051   12.1   0.1      0.079   11.5   0.1    1.2  1  Mqo             Malate:quinone oxidoreductase (Mqo)
      0.074   12.1   0.1       0.22   10.5   0.1    1.7  2  Lycopene_cycl   Lycopene cyclase protein
       0.11   12.5   0.1       0.33   10.9   0.0    1.8  2  NAD_binding_9   FAD-NAD(P)-binding
       0.11   12.1   0.1       0.23   11.1   0.1    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA
       0.15   11.1   0.0       0.34   10.0   0.0    1.5  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
        0.2   10.9   0.0       0.66    9.2   0.0    1.7  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.2   5.6e-23   6.3e-20       3     333 ..       3     340 ..       1     354 [. 0.74

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 5.6e-23
                    EEEEE--SHHHHHHHHHHHHTT.HHEEEEESSSSSCCSSS--EEE..HHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC...CEEEEEHHC CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaG.vrvvlvekrsttvvlpradgln..qrtmellrqlGledrilaegapnelmgealynelsdt...pkaradlel 92 
                    +V+IVGaG +Gl+la  Ls++   +v+++e+ +    +  + g++  +    ++r lGl d++l + +  ++  ++l  +  d     ++++ + +
     CCE30142.1   3 EVVIVGAGISGLTLAVTLSRYPnFNVTVLERAAALELENVGNGIQvpCNAASIMRCLGLLDKMLVQVKHPATLYKNLAYD--DGkelVDRNLSVYE 96 
                    8********************42459******998888766665533899************998775444444444444..22345666666667 PP

                    HHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEE CS
  FAD_binding_3  93 esspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvl 188
                    e  +  + ++   +  r+L+++a+++g+ ++ + ev   + d +  + ++ +     e   +a+ +++ DG +S++r  +  +++   t       
     CCE30142.1  97 ELYGAPWLLIHRADYMRLLRDEATQAGVVIKYGCEVC--HVDFSAPSVTLSNGH--VE---KADLVIASDGIHSRIRLLMHPSMRPVPTG--EYAY 183
                    9***********************************9..788888666666554..55...79**************9999885544433..4666 PP

                    EEEEEC.-SCCCTTCCEEEEECCTTEE.........EEEECCE.TEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEE..EEEEEEEE CS
  FAD_binding_3 189 dvlfda.dlsdiveplvlilsaesrgv.........mviPlen.tlerfyvqvearaekeersekfteeevkarlreivgektldv..eieevsaw 271
                     +lf+  +l+++ + +  i s++s +           + Pl++ +l + +++++ ++ +++ ++ ++    ++++ +  ++  l+   + ++  ++
     CCE30142.1 184 RALFKRsQLASTSA-WQHIVSNPSVIRmwlgpganaVLYPLQDgKLFNLVIIITDTDFNASFRQGEDLIGPVRNWLRDWDPFLLQMldKTDRLVRF 278
                    66676656663322.333444444433567777777899**9955555555544444444445555555556666666666655554467777778 PP

                    EE.EEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHH CS
  FAD_binding_3 272 tv.aqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdt 333
                    ++ ++++ +++++g v l+GDAaH++ P  +qG   a++Da+ L++ L+   + +   + Ldt
     CCE30142.1 279 PLyQAQILSSWSRGCVGLIGDAAHAMMPHLAQGAAAAVEDAFVLGTLLGRCAQ-HKTATALDT 340
                    76256899****************************************99888.666666666 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   8.5e-09   9.5e-06       2      29 ..       4      34 ..       3      44 .. 0.92
   2 !   19.6   0.0   4.8e-07   0.00054     143     220 ..     106     178 ..      83     307 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 8.5e-09
                EEEECTSHHHHHHHHHHHHTT...EEEEESS CS
         DAO  2 vviiGGGiiGlstAyeLarrg...Vtllekg 29
                vvi+G+Gi Gl+ A  L+r +   Vt+le++
  CCE30142.1  4 VVIVGAGISGLTLAVTLSRYPnfnVTVLERA 34
                9*****************99889*******8 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 4.8e-07
                 EEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HHHTTCTTTSEEEEE CS
         DAO 143 vdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsd.llgllkeldlpispv 220
                 ++ a +++ l+++a ++Gv i +g+ev +++     +  v  t + g++++ad v+ + G++s+  l +++ + +p +p+
  CCE30142.1 106 IHRADYMRLLRDEATQAGVVIKYGCEVCHVDFS---APSV--TLSnGHVEKADLVIASDGIHSRiRLLMHPSM-RP-VPT 178
                 59999************************9654...3444..223387766799*********9744233333.23.332 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   8.5e-06    0.0095       3     175 ..       4      35 ..       2      61 .. 0.66
   2 !   11.1   0.0   0.00015      0.17     184     244 ..     110     168 ..      97     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.5e-06
                  EEEE--SHHHHHHHHHHHHH.TS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaqa.gakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdeekia 99 
                  vv++G+G+ Gl++a tl+++ +++vt++e                                                                     
   CCE30142.1   4 VVIVGAGISGLTLAVTLSRYpNFNVTVLE--------------------------------------------------------------------- 32 
                  66777777777777777774466666664..................................................................... PP

                  ESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 100 ydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveard 175
                                                                                           ++ 
   CCE30142.1  33 -------------------------------------------------------------------------RAA 35 
                  .........................................................................333 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00015
                  HHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 184 elsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstell 244
                  +  + l+++ ++ Gv +k g++v  +d      +v+l++g++++adlv+ + G+  + +ll
   CCE30142.1 110 DYMRLLRDEATQAGVVIKYGCEVCHVDFSAP--SVTLSNGHVEKADLVIASDGIHSRIRLL 168
                  5567789999****************98887..89******************99888776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   1.6e-09   1.8e-06       1      29 [.       6      35 ..       6      37 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.6e-09
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekrd 29
                   IvGaG+sGl++A +L+++ +f+v++le++ 
     CCE30142.1  6 IVGAGISGLTLAVTLSRYpNFNVTVLERAA 35
                   9****************99********975 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.4e-06    0.0083       1      64 [.       3      67 ..       3      86 .. 0.81
   2 !    7.7   0.0    0.0012       1.3     152     213 ..     107     165 ..      88     170 .. 0.89
   3 ?   -0.1   0.0      0.28   3.1e+02     306     357 ..     281     333 ..     265     350 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.4e-06
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SS.S---SS-E.E--THHHH.THHHHT--HHHHC CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlvesee.igtvgvGe.atipsirk.llrlLgideeefl 64
                    ++vivG+G++G + A +l+++   +++vt++e ++ +   +vG    +p     ++r Lg+ ++ ++
      CCE30142.1  3 EVVIVGAGISGLTLAVTLSRYP--NFNVTVLERAAaLELENVGNgIQVPCNAAsIMRCLGLLDKMLV 67
                    59*******************9..68*****976516667899944577766679999999888444 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0012
                     -HHHHHHHHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG-II CS
  Trp_halogenase 152 daalyakfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfrgll 213
                      +a y ++Lr+ a+++Gv +  g+    + + d +  s++l++g++ +adl+i   G  +++
      CCE30142.1 107 HRADYMRLLRDEATQAGVVIKYGCE---VCHVDFSAPSVTLSNGHVEKADLVIASDGIHSRI 165
                     6899******************997...4556677789***************999998875 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.28
                     --EEES-SEETTEE.E-CCCTEE--CCCS-HHHHHHHHHHHHHHT--BTT--H CS
  Trp_halogenase 306 ttGrrkqawvknvv.alGlasgfvePlestsihliqaalrrLlallpdksdep 357
                      + +  ++w++++v ++G+a+ ++ P  +++ + + +++  L +ll +   ++
      CCE30142.1 281 YQAQILSSWSRGCVgLIGDAAHAMMPHLAQGAAAAVEDAFVLGTLLGRCAQHK 333
                     45667789******668*********999999999998888888776655555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   1.9e-08   2.1e-05      19      52 ..       3      36 ..       1      49 [. 0.91

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.9e-08
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailersvs 52
                +vvivGaG sGLt a +l++ p+++v++ler  +
  CCE30142.1  3 EVVIVGAGISGLTLAVTLSRYPNFNVTVLERAAA 36
                79****************************9876 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   9.7e-06     0.011       2      34 ..       4      37 ..       3      47 .. 0.88
   2 ?    0.1   0.0       1.1   1.2e+03      28      67 ..     106     136 ..      99     147 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.7e-06
                EEEECSSHHHHHHHHHHHHTTS.EEEEEESSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgk.kVtvversdkl 34
                vv+vG+G +gl lA +l+++ + +Vtv+er+  l
  CCE30142.1  4 VVIVGAGISGLTLAVTLSRYPNfNVTVLERAAAL 37
                9******************9876*******9876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.1
                 EESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEE CS
   Pyr_redox  28 versdkllrllDeeaskilqeklekngievllntkveeie 67 
                 ++r+d ++         +l+++ ++ g+ + ++ +v  ++
  CCE30142.1 106 IHRADYMR---------LLRDEATQAGVVIKYGCEVCHVD 136
                 55555555.........88889999999999988887776 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0098        11       1      22 [.      11      33 ..      11      35 .. 0.95
   2 !    9.5   0.0   0.00047      0.53     219     257 ..     120     156 ..      98     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0098
                   HHHHHHHHHHHHTT.EEEEEEES CS
  Amino_oxidase  1 laGLaaArqLlsaG.fdVtvlEa 22
                   ++GL+ A +L++   f+VtvlE 
     CCE30142.1 11 ISGLTLAVTLSRYPnFNVTVLER 33
                   8*********************6 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00047
                    TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEE CS
  Amino_oxidase 219 elrgldirlntrVkeikregdgvtvtledgevveaDaVv 257
                    ++ g+ i+++++V  ++ ++    vtl++g+v +aD V+
     CCE30142.1 120 TQAGVVIKYGCEVCHVDFSAPS--VTLSNGHVEKADLVI 156
                    478***************6655..5557*********88 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   4.5e-06    0.0051       2      33 ..       4      36 ..       3      53 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.5e-06
                   EEEE--SHHHHHHHHHHHHTTT.-EEEEESSSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGl.kvavvekeqe 33
                   v+++G+G++GL+ A+++++    +v+v+e + +
     CCE30142.1  4 VVIVGAGISGLTLAVTLSRYPNfNVTVLERAAA 36
                   9******************7766******9877 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1    0.0002      0.22       2      34 ..       3      36 ..       2      65 .. 0.90
   2 ?    4.1   0.0     0.014        15     112     164 ..     112     160 ..      91     163 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0002
                 SEEEE--SHHHHHHHHHH.HHTT--EEEE-SSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisa.akrgkrVlllekakk 34
                 +v+++G+G +Gl  A+++ +  + +V++le+a +
   CCE30142.1  3 EVVIVGAGISGLTLAVTLsRYPNFNVTVLERAAA 36
                 79***************9667899******9865 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.014
                  HHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 112 vdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                  +++l  e+++agv +++ +ev +v+ ++ +   v++ s++++e + lv+A+ G
   CCE30142.1 112 MRLLRDEATQAGVVIKYGCEVCHVDFSAPS---VTL-SNGHVEKADLVIASDG 160
                  68999*******************665555...888.889999999***9765 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     7e-05     0.079       3      42 ..       2      40 ..       1      47 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7e-05
         Mqo  3 vdvvliGaGimsatlgvllkelepelsievlerldkvaee 42
                ++vv++GaGi   tl+v l++  p+++++vler  +   e
  CCE30142.1  2 IEVVIVGAGISGLTLAVTLSR-YPNFNVTVLERAAALELE 40
                58*****************98.6**********8877665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0002      0.22       2      35 ..       4      36 ..       3      45 .. 0.89
   2 ?   -1.9   0.0       1.2   1.3e+03      82     143 ..     104     163 ..      95     171 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0002
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieasps 35
                   vv++GaG  gl lA  l +  p+ +v+++e ++ 
     CCE30142.1  4 VVIVGAGISGLTLAVTL-SRYPNFNVTVLERAAA 36
                   9****************.88899****9997665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
  Lycopene_cycl  82 grvsskrlkeellerlvengvkl.leakvesveeeeageslvvleggrkirarlvvdarglas 143
                      +++++  + l  +  ++gv   +      v +++++  +v+l++g+  +a lv+ + g+ s
     CCE30142.1 104 LLIHRADYMRLLRDEATQAGVVIkYGCE---VCHVDFSAPSVTLSNGHVEKADLVIASDGIHS 163
                    5566666666666666655544303334...44555555689999999999999999999766 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00029      0.33       1      35 [.       5      35 ..       5      41 .. 0.88
   2 ?   -2.8   0.0         5   5.6e+03     126     150 ..     134     156 ..     110     160 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpse 35
                   +ivGaG++Gl+++  L +      ++++t+ +++ 
     CCE30142.1  5 VIVGAGISGLTLAVTLSRYP----NFNVTVLERAA 35
                   7****************995....99999999865 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5
  NAD_binding_9 126 dleeradgqavlladgaslaadaVv 150
                     ++ +a +  v+l++g+  +ad V+
     CCE30142.1 134 HVDFSAPS--VTLSNGHVEKADLVI 156
                    44444443..678888888888887 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1    0.0002      0.23       1      34 [.       4      38 ..       4      51 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
                EEEES-SHHHHHHHHHHHH.HTHCEEEE-SCHHHH CS
        ApbA  1 iailGaGaiGsllaakLak.agadvtlilrsrrle 34
                ++i+GaG  G +la++L++  + +vt++ r + le
  CCE30142.1  4 VVIVGAGISGLTLAVTLSRyPNFNVTVLERAAALE 38
                68****************************98544 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00031      0.34       3      37 ..       2      35 ..       1      39 [. 0.91
   2 ?   -3.5   0.0       3.9   4.4e+03      93     126 ..     106     139 ..     101     149 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00031
  K_oxygenase  3 lDligiGiGpsnLsLailleevkkelkalflerqp 37
                 ++++++G+G s L+La++l+  + ++++ +ler  
   CCE30142.1  2 IEVVIVGAGISGLTLAVTLSRYP-NFNVTVLERAA 35
                 579********************.********976 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.9
  K_oxygenase  93 psRkefedYlrWvasqleeqvrfgeeveevepde 126
                  ++R+++ + lr  a q    +++g+ev +v++++
   CCE30142.1 106 IHRADYMRLLRDEATQAGVVIKYGCEVCHVDFSA 139
                  6788888888888888888889999999888765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00059      0.66       1      31 [.       5      35 ..       5      40 .. 0.92
   2 ?   -1.8   0.0       1.3   1.5e+03      81     133 ..     109     160 ..     106     182 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00059
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgn 31
                 +I+GaG  Gl+ a++l +    ++++lE+++
   CCE30142.1  5 VIVGAGISGLTLAVTLSRYPNFNVTVLERAA 35
                 7******************999******986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
  Pyr_redox_3  81 kealeYlrevaksfelpiklfeeVesvkkedegfevetske.tyeAkkviiAtG 133
                  +++++ lr  a++  + ik+ +eV  v+ ++ +  v+ s++ + +A+ vi + G
   CCE30142.1 109 ADYMRLLRDEATQAGVVIKYGCEVCHVDFSAPS--VTLSNGhVEKADLVIASDG 160
                  556666666666666666666666666655433..3333331333444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3362.73
//
Query:       CCE30143.1  [L=1082]
Description: uncharacterized protein CPUR_03991 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1082 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 7733.27
//
Query:       CCE30144.1  [L=871]
Description: uncharacterized protein CPUR_03992 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-51  173.8   0.0    1.4e-50  171.3   0.0    2.0  2  Vint         Hint-domain
    1.3e-26   92.5   0.0    3.6e-26   91.1   0.0    1.8  2  Vwaint       VWA / Hh  protein intein-like
    3.2e-15   56.8   0.0    6.3e-15   55.9   0.0    1.5  1  VWA          von Willebrand factor type A domain
    2.5e-14   53.5   0.0    9.4e-14   51.6   0.0    2.0  1  VWA_3        von Willebrand factor type A domain
    5.7e-14   52.3   0.0    2.5e-13   50.2   0.0    1.9  2  RT_RNaseH    RNase H-like domain found in reverse transcripta
    1.8e-13   51.0   0.0    4.5e-13   49.8   0.0    1.7  1  VWA_2        von Willebrand factor type A domain
    2.2e-07   30.8   0.2    9.4e-07   28.8   0.0    2.1  2  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
  ------ inclusion threshold ------
      0.047   13.1   0.2       0.46    9.8   0.2    2.1  1  VWA_CoxE     VWA domain containing CoxE-like protein


Domain annotation for each model (and alignments):
>> Vint  Hint-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.47     1e+03     130     151 ..     100     121 ..      89     139 .. 0.75
   2 !  171.3   0.0   6.4e-54   1.4e-50       1     157 [.     558     729 ..     558     736 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.47
        Vint 130 fGdykavvkslakLgvkkdgvv 151
                 fG++++vv+sl  ++ ++++++
  CCE30144.1 100 FGTRSTVVQSLLYMNERNKKTA 121
                 9*************65555544 PP

  == domain 2  score: 171.3 bits;  conditional E-value: 6.4e-54
        Vint   1 pCfagesrvklaegktvkiselrkgmkvqtpkgarkvaavlktkveeeelcrl......gellvTpwHPvrleg.keWafPadvae...kkvkytgsvY 89 
                 +Cfa ++ v+la+g+tv+i+ lr+g+kv+tp+gar+va+vl+++v++e+lc +       +llvTpwHP++l+g ++W+fP  +     + v+ytg vY
  CCE30144.1 558 VCFAESTPVELASGRTVPIRLLRRGTKVRTPTGARQVAMVLRMAVQDETLCCVvygvsgHGLLVTPWHPISLDGdAAWMFPGLLVGdgmEVVEYTGWVY 656
                 6***************************************************99***966**************899****99887788999******* PP

        Vint  90 svlLeadeepdahailveg.....vwgvtlgHgltegedvraHeffGdykavvkslakLgvkkdgvvlsegvk 157
                 sv+L++d ++++hai+v+g     vwgvtlgHg+++g+dvraH f+Gdy+av +sla Lg +k+gvv+++gv+
  CCE30144.1 657 SVMLQPDGNAASHAIRVGGsggdgVWGVTLGHGIVRGRDVRAHCFLGDYAAVGRSLAGLGEDKSGVVEGRGVR 729
                 *****************8889999********************************************99964 PP

>> Vwaint  VWA / Hh  protein intein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0   1.6e-29   3.6e-26       1      69 [.     419     494 ..     419     495 .. 0.96
   2 ?   -3.8   0.0       6.6   1.5e+04      42      55 ..     533     546 ..     532     555 .. 0.72

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 1.6e-29
      Vwaint   1 delcksLladLe.....gqvslalssreyyerwGrhYllSllsaHarQrcnsfkdpgpqaYg..splfkacrdrld 69 
                 d+++ sL++dL+     gq+sla+++ ++  +wG+hYl+S+++aH+rQ+cnsfkdpgp++Yg  splf++crd l+
  CCE30144.1 419 DARNISLMQDLNgppphGQISLAINNTAHLYKWGIHYLPSYMNAHSRQICNSFKDPGPLQYGaeSPLFISCRDSLN 494
                 567889*******************************************************************986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.6
      Vwaint  42 rQrcnsfkdpgpqa 55 
                  Qrc+ +  p+p+a
  CCE30144.1 533 VQRCQHRSPPTPLA 546
                 69999999887764 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   2.8e-18   6.3e-15       1     165 [.      46     220 ..      46     228 .. 0.91

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 2.8e-18
                 EEEEEEE-STTS.............CHHHHHHHHHHHHHHHHHHTBTTTTEEEEEEEESSSEEEEEETTSHC..HHHHHHHHHHTGSGGGGSSC-HHHH CS
         VWA   1 DivfvlDgSgsm.............geenfekvkefikklveklevgpegtrvglvqfssevktefslndys..skeellsalnnlkysgggttntgka 84 
                 Div+vlD+S sm             g + ++ +k ++ ++++ l+   + +r+g+v f++  +++ sl  ++  +k+++  +++ l  +++g+tn+  +
  CCE30144.1  46 DIVLVLDVSTSMrddapvpgdseptGLSVMDLIKHAALTILQTLT---PEDRLGIVVFGTRSTVVQSLLYMNerNKKTASAKIKGL--QPSGSTNLWHG 139
                 9******************999888888888**************...99***********99999999988889**********8..9999999**** PP

                 HHHHHHHHHHHHGTSSTTSEEEEEEEESS--CSS....HTHHHHHHHHGCTEEEEEEEESSSHHHHHHHHHSSSSCHHCEEEESS CS
         VWA  85 lkyaleklfkssagaRenakkviilltdGksndg....dpkeaaneakeqgikvfavGvgnadekelLnkiasepgeghvftvtd 165
                 ++++++ + +s  +   + ++ +++ltdG +n g     + ++++ ++    ++ ++G+g  +   lL+++a+ ++ g++ + +d
  CCE30144.1 140 IQNGIRVFDESLDN---GNVRAMMVLTDGMPNHGcpqqGYIPKLKAMQPLPATLDTFGFGYGVRSGLLKSLAEFGH-GNYAFIPD 220
                 ******99999999...**************999999999999999999999999999999999999999998888.66655555 PP

>> VWA_3  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   4.2e-17   9.4e-14       2     155 .]      46     217 ..      45     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 4.2e-17
       VWA_3   2 evvivvDvsssmsaen..............klvkdaLsvalrqLptndkiavllfgtkprplfpgsravsaaelqealqkikelelslgasnlegaLke 86 
                 ++v+v+Dvs sm++                +l+k+a   +l++L+++d++ +++fgt+ + + +    ++++ ++ a +kik l++ +g +nl   ++ 
  CCE30144.1  46 DIVLVLDVSTSMRDDApvpgdseptglsvmDLIKHAALTILQTLTPEDRLGIVVFGTR-STVVQSLLYMNERNKKTASAKIKGLQP-SGSTNLWHGIQN 142
                 79**********98766667777788888899**************************.779999999999***************.***********8 PP

       VWA_3  87 alrqp...akpgevrsvilltDgssaq..geervsdlisrar.ekirfhalglgsslsaamlqaLAeasgGtyef 155
                  +r +     +g+vr+ ++ltDg++    +++  + ++++ +   ++++++g+g  +   +l+ LAe ++G+y f
  CCE30144.1 143 GIRVFdesLDNGNVRAMMVLTDGMPNHgcPQQGYIPKLKAMQpLPATLDTFGFGYGVRSGLLKSLAEFGHGNYAF 217
                 88766555789**************55477777777777644499**********99****************76 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.7   3.7e+03      32      53 ..     353     374 ..     322     378 .. 0.83
   2 !   50.2   0.0   1.1e-16   2.5e-13      23      96 ..     760     835 ..     751     841 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.7
                 EEEEEEEE--HHHHTS-HHHHH CS
   RT_RNaseH  32 piafaSrklsgaernystieke 53 
                  i  aS++ls ae  y+    e
  CCE30144.1 353 NILQASKSLSTAELVYHESRAE 374
                 5778999*****9999877666 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 1.1e-16
                 EETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--.EEEE-SS--TTTTT----.---HH CS
   RT_RNaseH  23 qreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqg.rk.ftvitDhknlkyllskkslngrla 96 
                 q  ++g  +p+a+ S ++ +a+rny++++kel++ + +lk + + l++ ++ ft++ Dhknl+y++ +++ ++r+a
  CCE30144.1 760 QYSDKGVLNPVAYHSARFMAAQRNYTIHDKELFSNISCLKSWSEELRSaARpFTILADHKNLEYFTAPREMSERQA 835
                 556678899**************************************98556***************999889886 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0     2e-16   4.5e-13       1     106 [.      47     165 ..      47     166 .. 0.91

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 2e-16
       VWA_2   1 lvfvlDtSgSmrngdy........gptrleaakdaveallksl.pgdrvglvtfsdgpevlipl....tkdkakilnalrnleakgggtnlaaaLqlar 86 
                 +v+vlD+S Smr+++         g + ++ +k+a+ ++l++l p+dr+g+v+f+++++v+ +l    +++k++  +++++l+++ g tnl  ++q   
  CCE30144.1  47 IVLVLDVSTSMRDDAPvpgdseptGLSVMDLIKHAALTILQTLtPEDRLGIVVFGTRSTVVQSLlymnERNKKTASAKIKGLQPS-GSTNLWHGIQNGI 144
                 79***********9778999988778899************9967***********99999988777559**************6.************* PP

       VWA_2  87 kalkkrr.kgekrvivlitDg 106
                  ++++   +g+ r ++++tDg
  CCE30144.1 145 RVFDESLdNGNVRAMMVLTDG 165
                 ***9766899**********9 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.2   2.6e+03      58      79 ..     354     375 ..     349     381 .. 0.83
   2 !   28.8   0.0   4.2e-10   9.4e-07      48     100 .]     760     814 ..     757     814 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
  RT_RNaseH_2  58 iafaSrklskaernysttekel 79 
                  i  aS++ls ae  y+    e+
   CCE30144.1 354 ILQASKSLSTAELVYHESRAEI 375
                  5669********9999888776 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 4.2e-10
  RT_RNaseH_2  48 qedddgkerpiafaSrklskaernysttekellAivwalkkfrhyllg..rkftv 100
                  q +d+g ++p+a+ S ++ +a+rny++++kel++ + +lk +++ l +  r+ft+
   CCE30144.1 760 QYSDKGVLNPVAYHSARFMAAQRNYTIHDKELFSNISCLKSWSEELRSaaRPFTI 814
                  56676669************************************99987777775 PP

>> VWA_CoxE  VWA domain containing CoxE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2    0.0002      0.46      54     161 ..      41     166 ..      30     183 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0002
    VWA_CoxE  54 erkprelvllvDvSgSmaaysai...........flallhAllqqlp......rtevfaFdtrlvdlTralrerDpaeaLarvsaavedlgGgTrigaa 135
                 ++ p ++vl++DvS Sm + + +           +  + hA+l  l+      r  +++F+tr + + + l  +++++  a+++ +  + +G T++  +
  CCE30144.1  41 DHVPCDIVLVLDVSTSMRDDAPVpgdseptglsvMDLIKHAALTILQtltpedRLGIVVFGTRSTVVQSLLYMNERNKKTASAKIKGLQPSGSTNLWHG 139
                 567889***********9754332222222111133445666544444447889999999999999999996666666666665445558899998888 PP

    VWA_CoxE 136 laeflelvtrpaLsrrav..vvlvsDgl 161
                 +++ ++++  ++L ++ v  +++++Dg+
  CCE30144.1 140 IQNGIRVFD-ESLDNGNVraMMVLTDGM 166
                 888888888.677776533388888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 6107.46
//
Query:       CCE30145.1  [L=1056]
Description: uncharacterized protein CPUR_03993 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-66  224.5   0.1    3.2e-51  174.4   0.1    3.1  2  Pkinase_fungal  Fungal protein kinase
    2.6e-06   27.2   4.0    8.7e-06   25.5   4.0    2.0  1  F-box-like      F-box-like
      5e-06   26.1   1.4     0.0012   18.6   0.2    4.0  4  TPR_1           Tetratricopeptide repeat
    0.00053   19.4   0.0    0.00094   18.6   0.0    1.3  1  Pkinase         Protein kinase domain
    0.00085   19.1   1.3     0.0028   17.5   1.3    2.0  1  F-box           F-box domain
     0.0013   19.1   1.6        1.5    9.3   0.0    5.4  7  LRR_4           Leucine Rich repeats (2 copies)
     0.0018   18.9   1.6       0.04   14.7   0.4    3.8  5  TPR_14          Tetratricopeptide repeat
     0.0045   17.0   1.9       0.91    9.8   0.3    4.0  4  TPR_2           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   1.2e-13   2.7e-10      79     128 ..     678     726 ..     675     731 .. 0.92
   2 !  174.4   0.1   1.4e-54   3.2e-51     161     408 .]     732     977 ..     727     977 .. 0.84

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.2e-13
  Pkinase_fungal  79 RsGvlsseridirkdpekfirvvlglllmdddeLGlDptivtesdgrrsy 128
                     + G ++s++idi+k+p  fi+v+lg+l+m++++LG+Dpti   sdg++sy
      CCE30145.1 678 KLGGIVSKQIDINKEPVWFIQVILGFLWMSEEDLGFDPTI-KGSDGQQSY 726
                     5799************************************.459999988 PP

  == domain 2  score: 174.4 bits;  conditional E-value: 1.4e-54
  Pkinase_fungal 161 wrarkegergkeyvvKdsWrdaerksEaelLkkaeergvegvarlvahedve..ekdddi.aeiRkgldvtkaekfrskrkvvsssssqelsska 252
                     w++  +++ +k +v+KdsW+ +e ++E+e+L +a +++  +var+++h +v   +++dd  ++iR+gld+t+a++  +                 
      CCE30145.1 732 WKIGSKDHPEKPLVIKDSWQWPEHDEEGEMLLRADRQNAINVARYYHHDTVRvrGMNDDArDCIRRGLDITTASNY-Q----------------- 808
                     888888888999******************************************9999999************322.2................. PP

  Pkinase_fungal 253 evklkksesskkvekrsvdssv.stskrsrlenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskke 346
                     +++l++ +s ++ +       v ++++ ++ en+  + +v +       + +s+k+ll +l+ +I gh+sL+ ++giLHrDiS+nN++i+++ ++
      CCE30145.1 809 QGHLQPPSSDNRLT-------VePPDDYKH-ENKAIE-IVKR-------DSSSRKALLVCLEGCIIGHQSLY-DKGILHRDISTNNLMINEEPDN 886
                     22333333433444.......213333333.555553.3443.......46899******************.********************** PP

  Pkinase_fungal 347 gerkglLiDLDlakelsddssesgare..............................rtGTleFmaievlkgeeHsyrhDLESffyvllwic 408
                     ++ + +LiDLDla+++++ ++ s++                                rt T++Fmai +l+g+eHs++hDLESff+vl+wic
      CCE30145.1 887 PSWSYFLIDLDLASKTKR-KKPSVRDSvlwdwtsgrewvrkkleiamgaltpseasgRTRTTAFMAILLLHGQEHSFMHDLESFFWVLFWIC 977
                     *****************7.77776544677777888888888999999999999999**********************************9 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   4.0   3.9e-09   8.7e-06       3      48 .]     178     225 ..     176     225 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.9e-09
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrva...ldtplLWrrlvlr 48 
                  LP Ei  qIF yL +s+   + +VCr W+r     l++ +LWr++++r
  CCE30145.1 178 FLPAEIVTQIFLYLRLSQRFICLRVCREWKRTLtspLHC-QLWRTMTIR 225
                 6******************************99777778.*****9886 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0       0.1   2.3e+02      13      32 ..      13      32 ..      12      32 .. 0.89
   2 !   18.6   0.2   5.4e-07    0.0012       2      33 ..      83     114 ..      82     115 .. 0.95
   3 ?    1.1   0.0      0.18   3.9e+02       2      16 ..     117     131 ..     116     135 .. 0.84
   4 ?   -2.5   0.0       2.5   5.6e+03      15      30 ..     786     801 ..     785     801 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.1
                HTT-HHHHHHHHHHHHHHST CS
       TPR_1 13 klgkydeAleyyekALelnP 32
                  +ky  A + + +A+ ++P
  CCE30145.1 13 LAKKYSRASALFTRAICICP 32
                569*************9988 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 5.4e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 +al+ ++++y  lgk+d A+++ e  Lel P+
  CCE30145.1  83 QALNSRAATYAALGKLDHAIKDAEWMLELAPQ 114
                 79****************************96 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHTT- CS
       TPR_1   2 kalynlGnayfklgk 16 
                 + + +lGn+ + +++
  CCE30145.1 117 DGYLRLGNTARLQKN 131
                 789*********998 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2.5
                 T-HHHHHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekALel 30 
                 g+ d+A ++ ++ L +
  CCE30145.1 786 GMNDDARDCIRRGLDI 801
                 6779******999975 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.2e-07   0.00094     107     154 ..     856     909 ..     828     929 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.2e-07
                 HHHHHHHHHHTTEE-SS-SGGGEEEETTTE.....EEE-SGTTSEESSSSCS.B CS
     Pkinase 107 ilegleylHskgiiHrDlKpeNiLidekge.....lKitDFGlakelesssk.l 154
                  + g + l++kgi+HrD+ ++N++i+e+ +       ++D++la++ +++++ +
  CCE30145.1 856 CIIGHQSLYDKGILHRDISTNNLMINEEPDnpswsYFLIDLDLASKTKRKKPsV 909
                 55667789******************76666999999**********9988643 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.3   1.2e-06    0.0028       6      40 ..     179     213 ..     175     220 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.2e-06
                 S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box   6 LPsevlrhILerLplsdllalrrVSkgwrilidsd 40 
                 LP e++ +I+ +L ls ++ + rV++ w++ + s+
  CCE30145.1 179 LPAEIVTQIFLYLRLSQRFICLRVCREWKRTLTSP 213
                 999***************************98876 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.17   3.7e+02       1      33 [.     276     309 ..     276     312 .. 0.82
   2 !    9.3   0.0   0.00068       1.5       2      30 ..     334     365 ..     333     371 .. 0.91
   3 ?   -3.0   0.0       5.3   1.2e+04      21      32 ..     398     408 ..     392     412 .. 0.73
   4 ?   -2.5   0.1       3.5   7.8e+03      20      30 ..     461     471 ..     456     473 .. 0.65
   5 ?   -3.8   0.0         8   1.8e+04      13      33 ..     552     572 ..     551     577 .. 0.72
   6 ?    1.3   0.0      0.24   5.3e+02      19      30 ..     590     601 ..     585     608 .. 0.81
   7 ?   -3.5   0.0       7.6   1.7e+04      22      30 ..     624     632 ..     620     636 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.17
                 SS--EEE--SS---E-S-HHH.-TT--EEE-.-S CS
       LRR_4   1 pnLevLdLsnNqltdipllek.lpnLkeLdLsgN 33 
                 p+Le+L  s   l ++p+ ek  + L++L++ ++
  CCE30145.1 276 PSLEKLEVSYLGLLSFPSDEKiWKRLRYLSIESC 309
                 7899999997567778888898999****99665 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00068
                 S--EEE--S......S---E-S-HHH-TT--EEE- CS
       LRR_4   2 nLevLdLsn......NqltdiplleklpnLkeLdL 30 
                 +Le+L+Ls+      N++ ++p    lpnLk L +
  CCE30145.1 334 SLEHLHLSGipqywyNRVPSLPI---LPNLKILRI 365
                 7*******9999********999...*******97 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.3
                 H-TT--EEE-.- CS
       LRR_4  21 klpnLkeLdLsg 32 
                  +p L++L + g
  CCE30145.1 398 AFPRLEQLFI-G 408
                 4899999988.4 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 3.5
                 HH-TT--EEE- CS
       LRR_4  20 eklpnLkeLdL 30 
                   l++L++++L
  CCE30145.1 461 TRLTSLQHITL 471
                 44777777766 PP

  == domain 5  score: -3.8 bits;  conditional E-value: 8
                 --E-S-HHH-TT--EEE-.-S CS
       LRR_4  13 ltdiplleklpnLkeLdLsgN 33 
                 l+  ++l + p+ ++L + g+
  CCE30145.1 552 LKNYEWLCGAPSIHTLRCYGF 572
                 566677777899999999776 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.24
                 HHH-TT--EEE- CS
       LRR_4  19 leklpnLkeLdL 30 
                 l+ +pnL++L++
  CCE30145.1 590 LATFPNLRTLSI 601
                 55699****998 PP

  == domain 7  score: -3.5 bits;  conditional E-value: 7.6
                 -TT--EEE- CS
       LRR_4  22 lpnLkeLdL 30 
                 l++L+++++
  CCE30145.1 624 LTHLETIYV 632
                 889999988 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.9   1.5e+04      14      32 ..      14      32 ..       4      38 .. 0.76
   2 !   14.7   0.4   1.8e-05      0.04       4      42 ..      85     123 ..      82     125 .. 0.91
   3 ?   -2.8   0.0       7.5   1.7e+04      11      41 ..     272     301 ..     265     301 .. 0.67
   4 ?   -2.6   0.0       6.5   1.5e+04      17      29 ..     515     527 ..     514     529 .. 0.86
   5 ?   -0.6   0.0       1.5   3.4e+03      14      30 ..     785     801 ..     782     806 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.9
      TPR_14 14 lGdpdeAiallrralalaP 32
                + ++ +A al+ ra+  +P
  CCE30145.1 14 AKKYSRASALFTRAICICP 32
                5678899999999998877 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.8e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 l  +a+ ++alG++d Ai+ ++++l+laP+ ++ +l+l+
  CCE30145.1  85 LNSRAATYAALGKLDHAIKDAEWMLELAPQLPDGYLRLG 123
                 556899****************************99997 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 7.5
      TPR_14  11 llalGdpdeAiallrralalaPddaeawlll 41 
                 l a+  +++ +  +  +l+ +P+d+ +w +l
  CCE30145.1 272 LKASPSLEKLEVSYLGLLS-FPSDEKIWKRL 301
                 5555666666666666677.99999999886 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 6.5
      TPR_14  17 pdeAiallrrala 29 
                 pd+A+all  a++
  CCE30145.1 515 PDGARALLSNAIK 527
                 899****999886 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 1.5
      TPR_14  14 lGdpdeAiallrralal 30 
                 +G  d+A+++ rr l+ 
  CCE30145.1 785 RGMNDDARDCIRRGLDI 801
                 6889*********9985 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.055   1.2e+02       5      28 ..       5      28 ..       2      32 .. 0.88
   2 !    9.8   0.3   0.00041      0.91       3      33 ..      84     114 ..      82     115 .. 0.90
   3 ?   -0.6   0.1      0.87   1.9e+03       2      18 ..     117     133 ..     116     145 .. 0.84
   4 ?   -2.0   0.0       2.5   5.5e+03      15      30 ..     786     801 ..     785     802 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.055
       TPR_2  5 ynlGlayyklgdyeeAleafekAl 28
                 + G+  y +++y +A ++f +A+
  CCE30145.1  5 IQAGRHSYLAKKYSRASALFTRAI 28
                567889999*************98 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00041
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 al+ ++  y++lg+++ A+++ e  lel+P+
  CCE30145.1  84 ALNSRAATYAALGKLDHAIKDAEWMLELAPQ 114
                 8999*****************9988888886 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.87
       TPR_2   2 ealynlGlayyklgdye 18 
                 +++ +lG+ ++ +++ e
  CCE30145.1 117 DGYLRLGNTARLQKNDE 133
                 68999*****9999976 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2.5
       TPR_2  15 gdyeeAleafekAlel 30 
                 g  ++A+++ ++ l +
  CCE30145.1 786 GMNDDARDCIRRGLDI 801
                 56699******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1056 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 7106.73
//
Query:       CCE30146.1  [L=640]
Description: uncharacterized protein CPUR_03994 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        3.7    7.7  16.5      0.035   14.2   5.3    3.1  3  Cep57_CLD_2  Centrosome localisation domain of PPC89
        6.8    7.4  12.7         13    6.5   3.8    3.0  2  YabA         Initiation control protein YabA


Domain annotation for each model (and alignments):
>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.4      0.27   2.4e+03      46      58 ..     187     199 ..     168     214 .. 0.65
   2 ?   14.2   5.3   3.9e-06     0.035       4      48 ..     235     279 ..     233     281 .. 0.92
   3 ?   -0.4   0.2      0.14   1.3e+03      16      40 ..     513     537 ..     511     543 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.27
  Cep57_CLD_2  46 elneLkaevealr 58 
                  e++  ++evealr
   CCE30146.1 187 EHEMMRREVEALR 199
                  4444555555555 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.9e-06
  Cep57_CLD_2   4 evktLqnrLdsltrklqvheeelkrLnkERdsalrqLgvAyeeln 48 
                  e+++L  rL+ +   +q  e+e  +L  ERd+ l+++++ +e  +
   CCE30146.1 235 ENERLHHRLKVAKKVIQQKEDETTHLEEERDMLLTRIRENREHFQ 279
                  89************************************9887665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.14
  Cep57_CLD_2  16 trklqvheeelkrLnkERdsalrqL 40 
                  ++  +  +++ ++L++ + sa r+L
   CCE30146.1 513 SQASEGVQGAEESLRRQHHSARRSL 537
                  566677789999*********9998 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   2.9    0.0086        78      20      53 ..     138     182 ..     134     230 .. 0.72
   2 ?    6.5   3.8    0.0014        13      13      68 ..     211     262 ..     203     319 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0086
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...........X CS
        YabA  20 lleeleelkeelaelleenaeLeleneklrerl...........e 53 
                 ++++ +el+  l++++ e ++L++e  +++ +            +
  CCE30146.1 138 MNASADELRFMLQTCIAEQQKLKMETAHFKLQYnllslqseddvK 182
                 667788999999999999999999999988776555554333330 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXX CS
        YabA  13 leeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelse 68 
                 l++  ++++++  ++k+  ++ +een++L+   +  ++ ++++e+++++ +    e
  CCE30146.1 211 LSTAPDSMQSKYLQMKQWYEAAMEENERLHHRLKVAKKVIQQKEDETTHLE----E 262
                 666667899999999999999999999999998888888844433333222....2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1527  (0.0851693); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4509.61
//
Query:       CCE30147.1  [L=141]
Description: uncharacterized protein CPUR_03995 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.091   11.5   0.0       0.11   11.3   0.0    1.0  1  DUF2207   Predicted membrane protein (DUF2207)
        2.1    8.6   5.0       0.65   10.2   1.6    1.8  2  HemY_N    HemY protein N-terminus


Domain annotation for each model (and alignments):
>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.2e-05      0.11     376     447 ..      28     127 ..       7     133 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.2e-05
     DUF2207 376 gkkklkklsalglgliilglilillallllvll...........................lvfllilllillliaiivll.lfsrllgrrteeGaella 446
                 +  ++k  +++ +++ i ++ ++ ++++ + +l                             ++l +++++++i+  v++  +s++++r+ ++G+  ++
  CCE30147.1  28 PADYYKPDNIVKVLIPISIVGWLAFGAICVLCLnghgragrwipewyldsggsrwdkaavGAWWLAVVFAWPVILPSVAVrSLSGRVRRWRANGRGRRG 126
                 44455555555555555555555444444444466788889*******************555555555544444444440345799999888886665 PP

     DUF2207 447 k 447
                 +
  CCE30147.1 127 R 127
                 5 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       0.3   2.7e+03      21      50 ..      40      69 ..      36      73 .. 0.69
   2 ?   10.2   1.6   7.3e-05      0.65      19      62 ..      86     129 ..      84     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.3
      HemY_N 21 lllvllfvllylllrllrlllrlparvrrw 50
                +l+ + +v ++++ +++ l l+  +r+ rw
  CCE30147.1 40 VLIPISIVGWLAFGAICVLCLNGHGRAGRW 69
                455566777777777777777777777777 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 7.3e-05
      HemY_N  19 avlllvllfvllylllrllrlllrlparvrrwrrrrrerkarea 62 
                 av +  l++v ++ ++    ++ +l++rvrrwr++ r r++r +
  CCE30147.1  86 AVGAWWLAVVFAWPVILPSVAVRSLSGRVRRWRANGRGRRGRGR 129
                 4555666667777777777788899***************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1087.16
//
Query:       CCE30148.1  [L=1157]
Description: related to receptor-like protein kinase 5 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-29  100.8  36.9    2.7e-06   27.1   1.4    9.0 10  LRR_8     Leucine rich repeat
    2.2e-28   97.8  29.8      9e-05   22.8   0.1   10.5 11  LRR_4     Leucine Rich repeats (2 copies)
     0.0031   17.5  27.5      0.044   13.8   0.8   10.4 12  LRR_6     Leucine Rich repeat
     0.0076   16.6  27.3         19    6.3   0.3   11.7 14  LRR_1     Leucine Rich Repeat
  ------ inclusion threshold ------
       0.01   15.3  15.8       0.14   11.7   0.0    5.5  6  LRR_9     Leucine-rich repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   1.9   2.3e-08   8.4e-05      26      61 .]     578     612 ..     569     612 .. 0.93
   2 !   20.5   3.9   8.2e-08   0.00029      22      61 .]     621     660 ..     616     660 .. 0.92
   3 !   27.1   1.4   7.5e-10   2.7e-06       3      61 .]     650     706 ..     649     706 .. 0.96
   4 !   19.0   0.0   2.4e-07   0.00087       3      61 .]     696     756 ..     695     756 .. 0.91
   5 !   17.0   0.1     1e-06    0.0037       2      53 ..     745     793 ..     744     793 .. 0.92
   6 !   24.4   0.0   5.2e-09   1.9e-05       2      61 .]     767     824 ..     766     824 .. 0.93
   7 ?    0.3   0.0      0.17     6e+02      27      61 .]     933     968 ..     920     968 .. 0.63
   8 ?   -0.1   0.2      0.22   7.8e+02       4      36 ..     959     991 ..     956     994 .. 0.56
   9 !   12.8   2.3     2e-05     0.073       1      61 []    1005    1066 ..    1005    1066 .. 0.95
  10 !   12.7   0.2   2.2e-05     0.079       9      61 .]    1062    1113 ..    1054    1113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.3e-08
                 T--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  26 nLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L++LdL  N l+ + p  f+ L++L+sL+Ls+N+L
  CCE30148.1 578 GLETLDLHGNVLSAV-PLGFRRLANLTSLNLSSNKL 612
                 79*************.9*****************98 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 8.2e-08
                 TT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  22 kglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                  ++++L+ L+Ls Nll+   + a+ +L +L++LdL gN++
  CCE30148.1 621 LQMTSLRDLKLSKNLLSGPLNAALLDLGALEMLDLHGNNI 660
                 5799**************667*****************97 PP

  == domain 3  score: 27.1 bits;  conditional E-value: 7.5e-10
                 -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 L+ LdL+ N++t+l++++ + +s+L++L++++N+l+ +  +++  L  L++L+++ NrL
  CCE30148.1 650 LEMLDLHGNNITALPPHMER-MSRLRILNMNENQLEMIPFDSLCKL-PLTELHVRKNRL 706
                 899***************99.*************************.799*****9997 PP

  == domain 4  score: 19.0 bits;  conditional E-value: 2.4e-07
                 -SEEE-TTS-.-SEE-TTSSTT-TT--EEE--SS---G.GGGGGGTT--S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNr.ltslddeaFkglsnLkvLdLsnNlltt.lspgafsgLpsLrsLdLsgNrL 61 
                 Lt+L++++Nr   +l ++  +gl+ L++Ld s N+lt+ + ++  ++Lp++ s  Ls Nr+
  CCE30148.1 696 LTELHVRKNRlTGVLIPKPVEGLTYLQTLDASANRLTHlVPEDGQVNLPAVHSVSLSANRI 756
                 99********66789***********************55566778*************97 PP

  == domain 5  score: 17.0 bits;  conditional E-value: 1e-06
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.E CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrs 53 
                  ++s++Ls Nr+++ +d a   +++L +L+L +N + ++ p+ f +L +Lr+
  CCE30148.1 745 AVHSVSLSANRIQHFPDIAS--WTSLLTLSLDENHIARI-PENFTSLQKLRY 793
                 57899************986..59***************.9*********96 PP

  == domain 6  score: 24.4 bits;  conditional E-value: 5.2e-09
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L +L+L+ N++  ++ e F++l++L++ d s+N ++++ p  ++ +  L+++ L+gN+L
  CCE30148.1 767 SLLTLSLDENHIARIP-ENFTSLQKLRYADFSSNDISVI-PPEIARMQGLTMIRLTGNPL 824
                 5779***********7.67888*****************.899***************97 PP

  == domain 7  score: 0.3 bits;  conditional E-value: 0.17
                 --EEE--SS---GGGGGGGTT-...-S-.EEE--SS-- CS
       LRR_8  27 LkvLdLsnNllttlspgafsgL...psLrsLdLsgNrL 61 
                 L  +dLs  ++++l+ +++s     +++r++ L +N+L
  CCE30148.1 933 L--MDLSKSEMSSLDHQTCSAVaaqNQVRQIQLHHNPL 968
                 4..46777777777777666552225788999999886 PP

  == domain 8  score: -0.1 bits;  conditional E-value: 0.22
                 SEEE-TTS--SEE-TTSSTT-TT--EEE--SS- CS
       LRR_8   4 tsLdLsnNrltslddeaFkglsnLkvLdLsnNl 36 
                 + ++L++N l +++         L +L+Ls+  
  CCE30148.1 959 RQIQLHHNPLAKIPIPLTAFGLTLSILSLSHSH 991
                 556666666666655444444566666666654 PP

  == domain 9  score: 12.8 bits;  conditional E-value: 2e-05
                  TT-SEEE-TTS--SEE-TTS.STT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    1 pnLtsLdLsnNrltslddea.FkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  p L++L++ +N+ tsl++ + F + + L+ Ld s N+lt l  +  + +p+L  L   +N+L
  CCE30148.1 1005 PALRELSIMSNQVTSLSPLTrFLKAPILEKLDASLNRLTALPLDLKRTFPQLSVLLAFSNQL 1066
                  679**************9776999*********************************99998 PP

  == domain 10  score: 12.7 bits;  conditional E-value: 2.2e-05
                  TTS--SEE-TTSSTT-TT--EEE--SS---GGGGG..GGTT--S-.EEE--SS-- CS
       LRR_8    9 snNrltslddeaFkglsnLkvLdLsnNllttlspg..afsgLpsLrsLdLsgNrL 61  
                   +N+lt l++++ +g   L++ d s+N +  l+p+   ++g   L+ Ld++gNr+
  CCE30148.1 1062 FSNQLTQLEPDSIRG---LRIVDVSSNDIGQLNPRlgLLEGVDGLQRLDVTGNRF 1113
                  4677**********5...99*************963379**************85 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   1.9   7.3e-08   0.00026       3      37 ..     579     613 ..     578     619 .. 0.88
   2 !   14.7   6.4   8.5e-06      0.03       2      36 ..     601     636 ..     600     644 .. 0.84
   3 !   22.8   0.1   2.5e-08     9e-05       3      39 ..     650     686 ..     649     693 .. 0.85
   4 !    9.0   0.0   0.00053       1.9       3      38 ..     696     733 ..     696     737 .. 0.78
   5 !    9.5   0.0   0.00039       1.4       3      42 ..     721     762 ..     719     764 .. 0.81
   6 !    6.0   0.2    0.0046        16       1      28 [.     766     791 ..     766     793 .. 0.76
   7 !   11.1   0.0   0.00012      0.42       1      37 [.     789     825 ..     789     830 .. 0.87
   8 ?   -0.7   0.0       0.6   2.1e+03       5      20 ..     960     976 ..     957     994 .. 0.65
   9 !   13.1   0.2   2.8e-05     0.099       3      43 ..     982    1024 ..     980    1025 .. 0.79
  10 !   14.8   0.9   7.8e-06     0.028       3      40 ..    1032    1070 ..    1032    1074 .. 0.90
  11 !    7.0   0.0    0.0023       8.2       2      33 ..    1076    1111 ..    1075    1118 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 7.3e-08
                 --EEE--SS---E-S-.HHH-TT--EEE-.-S---- CS
       LRR_4   3 LevLdLsnNqltdipl.leklpnLkeLdLsgNnlit 37 
                 Le+LdL++N l+ +pl ++ l nL++L+Ls+N +++
  CCE30148.1 579 LETLDLHGNVLSAVPLgFRRLANLTSLNLSSN-KLG 613
                 9****************888*********999.654 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 8.5e-06
                 S--EEE--SS---E-S-...HHH-TT--EEE-.-S--- CS
       LRR_4   2 nLevLdLsnNqltdipl...leklpnLkeLdLsgNnli 36 
                 nL++L+Ls+N+l   +l   l ++++L+ L Ls N l+
  CCE30148.1 601 NLTSLNLSSNKLGNESLatiL-QMTSLRDLKLSKN-LL 636
                 9************77776644.6*********999.54 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 2.5e-08
                 --EEE--SS---E-S-..HHH-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdipl..leklpnLkeLdLsgNnlitdl 39 
                 Le LdL++N++t +p+   + +  L+ L++++N +++ +
  CCE30148.1 650 LEMLDLHGNNITALPPhmER-MSRLRILNMNEN-QLEMI 686
                 99**************7666.*********888.88544 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00053
                 --EEE--SS---E-S-HH...H-TT--EEE-.-S----- CS
       LRR_4   3 LevLdLsnNqltdiplle...klpnLkeLdLsgNnlitd 38 
                 L++L+ + N+lt +  ++   +l+ L++Ld s N ++t 
  CCE30148.1 696 LTELHVRKNRLTGVLIPKpveGLTYLQTLDASAN-RLTH 733
                 89**********6444334457*********999.6654 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.00039
                 --EEE--SS---E-S-.HH..H-TT--EEE-.-S-----GGGG CS
       LRR_4   3 LevLdLsnNqltdipl.le..klpnLkeLdLsgNnlitdldeL 42 
                 L++Ld s N+lt + +  +  +lp  ++++Ls N +i+ ++++
  CCE30148.1 721 LQTLDASANRLTHLVPeDGqvNLPAVHSVSLSAN-RIQHFPDI 762
                 99*****88***6666433668*********999.88877665 PP

  == domain 6  score: 6.0 bits;  conditional E-value: 0.0046
                 SS--EEE--SS---E-S-HHH-TT--EE CS
       LRR_4   1 pnLevLdLsnNqltdiplleklpnLkeL 28 
                 ++L +L+L  N++  ip   ++++L++L
  CCE30148.1 766 TSLLTLSLDENHIARIPE--NFTSLQKL 791
                 68999****9*****888..55555554 PP

  == domain 7  score: 11.1 bits;  conditional E-value: 0.00012
                 SS--EEE--SS---E-S-.HHH-TT--EEE-.-S---- CS
       LRR_4   1 pnLevLdLsnNqltdipl.leklpnLkeLdLsgNnlit 37 
                 ++L++ d+s+N ++ ip+ ++ +  L+ + L+gN +++
  CCE30148.1 789 QKLRYADFSSNDISVIPPeIARMQGLTMIRLTGN-PLR 825
                 68****************6445*********999.554 PP

  == domain 8  score: -0.7 bits;  conditional E-value: 0.6
                 EEE--SS---E-S-.HH CS
       LRR_4   5 vLdLsnNqltdipl.le 20 
                  + L++N l +ip  l 
  CCE30148.1 960 QIQLHHNPLAKIPIpLT 976
                 56799999999998433 PP

  == domain 9  score: 13.1 bits;  conditional E-value: 2.8e-05
                  --EEE--SS---E-S-HH...H-TT--EEE-.-S-----GGGGX CS
       LRR_4    3 LevLdLsnNqltdiplle...klpnLkeLdLsgNnlitdldeLk 43  
                  L +L+Ls+ +l   + l+    lp L+eL++ +N ++t+l++L 
  CCE30148.1  982 LSILSLSHSHLAGESYLSeplELPALRELSIMSN-QVTSLSPLT 1024
                  5679999889998888444545********9455.*****9985 PP

  == domain 10  score: 14.8 bits;  conditional E-value: 7.8e-06
                  --EEE--SS---E-S-.HH.H-TT--EEE-.-S-----GG CS
       LRR_4    3 LevLdLsnNqltdipl.le.klpnLkeLdLsgNnlitdld 40  
                  Le+Ld s N+lt +pl l+  +p+L +L L + n++t+l+
  CCE30148.1 1032 LEKLDASLNRLTALPLdLKrTFPQLSVL-LAFSNQLTQLE 1070
                  89*****88*******97745*******.*9999***996 PP

  == domain 11  score: 7.0 bits;  conditional E-value: 0.0023
                  S--EEE--SS---E-S-....HHH-TT--EEE-.-S CS
       LRR_4    2 nLevLdLsnNqltdipl....leklpnLkeLdLsgN 33  
                   L+++d s+N +  +++    le+ + L+ Ld++gN
  CCE30148.1 1076 GLRIVDVSSNDIGQLNPrlglLEGVDGLQRLDVTGN 1111
                  599**************9776668999******999 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.67   2.4e+03       5      16 ..     579     590 ..     579     592 .. 0.86
   2 !   13.8   0.8   1.2e-05     0.044       4      21 ..     601     618 ..     599     621 .. 0.88
   3 ?    1.1   0.1      0.15   5.4e+02       3      16 ..     624     637 ..     622     639 .. 0.85
   4 ?   -0.8   0.1      0.62   2.2e+03       8      16 ..     653     661 ..     650     662 .. 0.85
   5 ?   -0.0   0.1      0.34   1.2e+03       3      15 ..     671     683 ..     670     684 .. 0.88
   6 ?    2.4   0.0     0.059   2.1e+02       5      17 ..     696     708 ..     693     709 .. 0.90
   7 ?   -1.0   0.2      0.69   2.5e+03       3      15 ..     766     778 ..     766     779 .. 0.90
   8 ?   -1.0   0.0      0.73   2.6e+03       3      16 ..     789     802 ..     787     802 .. 0.79
   9 ?   -1.8   0.1       1.3   4.7e+03       4      18 ..     981     995 ..     980     996 .. 0.82
  10 ?    1.5   0.0      0.11   4.1e+02       5      16 ..    1007    1018 ..    1005    1019 .. 0.92
  11 !    5.3   0.0    0.0066        24       5      16 ..    1077    1088 ..    1074    1089 .. 0.92
  12 ?    0.3   0.0      0.27   9.6e+02       5      15 ..    1103    1113 ..    1102    1114 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.67
       LRR_6   5 LteLdLsgNdIg 16 
                 L++LdL gN ++
  CCE30148.1 579 LETLDLHGNVLS 590
                 89****999876 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.2e-05
       LRR_6   4 hLteLdLsgNdIgDeGae 21 
                 +Lt+L+Ls+N++g+e + 
  CCE30148.1 601 NLTSLNLSSNKLGNESLA 618
                 8*************9875 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.15
       LRR_6   3 thLteLdLsgNdIg 16 
                 t+L+ L Ls N ++
  CCE30148.1 624 TSLRDLKLSKNLLS 637
                 89*********887 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.62
       LRR_6   8 LdLsgNdIg 16 
                 LdL gN+I+
  CCE30148.1 653 LDLHGNNIT 661
                 9*******8 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.34
       LRR_6   3 thLteLdLsgNdI 15 
                 + L+ L+++ N++
  CCE30148.1 671 SRLRILNMNENQL 683
                 579********97 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.059
       LRR_6   5 LteLdLsgNdIgD 17 
                 LteL+++ N +++
  CCE30148.1 696 LTELHVRKNRLTG 708
                 9*********997 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 0.69
       LRR_6   3 thLteLdLsgNdI 15 
                 t+L +L+L  N+I
  CCE30148.1 766 TSLLTLSLDENHI 778
                 689********98 PP

  == domain 8  score: -1.0 bits;  conditional E-value: 0.73
       LRR_6   3 thLteLdLsgNdIg 16 
                 ++L++ d s+NdI+
  CCE30148.1 789 QKLRYADFSSNDIS 802
                 56777799****96 PP

  == domain 9  score: -1.8 bits;  conditional E-value: 1.3
       LRR_6   4 hLteLdLsgNdIgDe 18 
                 +L  L+Ls+ ++ +e
  CCE30148.1 981 TLSILSLSHSHLAGE 995
                 7899*****988765 PP

  == domain 10  score: 1.5 bits;  conditional E-value: 0.11
       LRR_6    5 LteLdLsgNdIg 16  
                  L+eL++++N+++
  CCE30148.1 1007 LRELSIMSNQVT 1018
                  99********97 PP

  == domain 11  score: 5.3 bits;  conditional E-value: 0.0066
       LRR_6    5 LteLdLsgNdIg 16  
                  L+ +d+s+NdIg
  CCE30148.1 1077 LRIVDVSSNDIG 1088
                  99*********8 PP

  == domain 12  score: 0.3 bits;  conditional E-value: 0.27
       LRR_6    5 LteLdLsgNdI 15  
                  L+ Ld++gN +
  CCE30148.1 1103 LQRLDVTGNRF 1113
                  899******75 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.2   7.1e+02       2      12 ..     579     589 ..     578     599 .. 0.81
   2 !    6.3   0.3    0.0052        19       1      16 [.     601     616 ..     601     623 .. 0.80
   3 ?   -0.6   0.5      0.99   3.5e+03       1      20 [.     625     644 ..     625     647 .. 0.82
   4 ?    2.1   0.0      0.13   4.6e+02       2      17 ..     650     665 ..     649     667 .. 0.87
   5 !    6.1   0.2    0.0061        22       1      23 []     672     694 ..     672     694 .. 0.95
   6 ?   -0.1   0.0      0.67   2.4e+03       2      16 ..     696     710 ..     696     718 .. 0.77
   7 ?    0.5   0.0      0.42   1.5e+03       2      18 ..     721     737 ..     720     742 .. 0.88
   8 ?   -0.0   0.0      0.62   2.2e+03       1      17 [.     790     806 ..     767     810 .. 0.76
   9 ?   -3.1   0.0         5   1.8e+04       5      12 ..     817     824 ..     814     831 .. 0.74
  10 ?   -3.8   0.0         5   1.8e+04       2      12 ..     982     992 ..     981     996 .. 0.77
  11 ?   -2.4   0.0       3.9   1.4e+04       2      17 ..    1007    1022 ..    1006    1026 .. 0.79
  12 ?    0.8   0.1      0.33   1.2e+03       9      23 .]    1063    1077 ..    1032    1077 .. 0.74
  13 ?    2.0   0.0      0.14   4.9e+02       2      18 ..    1077    1093 ..    1076    1094 .. 0.88
  14 ?    2.7   0.0     0.079   2.8e+02       2      19 ..    1103    1119 ..    1102    1125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.2
       LRR_1   2 LrhLdLsnnpl 12 
                 L++LdL +n l
  CCE30148.1 579 LETLDLHGNVL 589
                 9********87 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0052
       LRR_1   1 nLrhLdLsnnpllglp 16 
                 nL++L+Ls+n l++ +
  CCE30148.1 601 NLTSLNLSSNKLGNES 616
                 8**********96544 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.99
       LRR_1   1 nLrhLdLsnnpllglppnsf 20 
                 +Lr L Ls n l+g +++++
  CCE30148.1 625 SLRDLKLSKNLLSGPLNAAL 644
                 6999********88877766 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.13
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 L+ LdL +n+++ lpp
  CCE30148.1 650 LEMLDLHGNNITALPP 665
                 899********98887 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0061
       LRR_1   1 nLrhLdLsnnpllglppnsfqnL 23 
                 +Lr L+++ n+l+ +p +s+++L
  CCE30148.1 672 RLRILNMNENQLEMIPFDSLCKL 694
                 69******************987 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.67
       LRR_1   2 LrhLdLsnnpllglp 16 
                 L++L+++ n+l+g +
  CCE30148.1 696 LTELHVRKNRLTGVL 710
                 899********6544 PP

  == domain 7  score: 0.5 bits;  conditional E-value: 0.42
       LRR_1   2 LrhLdLsnnpllglppn 18 
                 L++Ld s n+l++l p+
  CCE30148.1 721 LQTLDASANRLTHLVPE 737
                 99*********999886 PP

  == domain 8  score: -0.0 bits;  conditional E-value: 0.62
       LRR_1   1 nLrhLdLsnnpllglpp 17 
                 +Lr+ d s+n ++ +pp
  CCE30148.1 790 KLRYADFSSNDISVIPP 806
                 46666888888866665 PP

  == domain 9  score: -3.1 bits;  conditional E-value: 5
       LRR_1   5 LdLsnnpl 12 
                 + L++npl
  CCE30148.1 817 IRLTGNPL 824
                 7899***9 PP

  == domain 10  score: -3.8 bits;  conditional E-value: 5
       LRR_1   2 LrhLdLsnnpl 12 
                 L  L Ls+ +l
  CCE30148.1 982 LSILSLSHSHL 992
                 66899999887 PP

  == domain 11  score: -2.4 bits;  conditional E-value: 3.9
       LRR_1    2 LrhLdLsnnpllglpp 17  
                  Lr+L + +n+ ++l+p
  CCE30148.1 1007 LRELSIMSNQVTSLSP 1022
                  99**998888766655 PP

  == domain 12  score: 0.8 bits;  conditional E-value: 0.33
       LRR_1    9 nnpllglppnsfqnL 23  
                  +n+l++l+p+s+ +L
  CCE30148.1 1063 SNQLTQLEPDSIRGL 1077
                  688899999998776 PP

  == domain 13  score: 2.0 bits;  conditional E-value: 0.14
       LRR_1    2 LrhLdLsnnpllglppn 18  
                  Lr  d+s+n +++l p+
  CCE30148.1 1077 LRIVDVSSNDIGQLNPR 1093
                  99*********998775 PP

  == domain 14  score: 2.7 bits;  conditional E-value: 0.079
       LRR_1    2 LrhLdLsnnpllglppns 19  
                  L++Ld+++n++ + p +s
  CCE30148.1 1103 LQRLDVTGNRF-RVPRWS 1119
                  9********99.666665 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.16   5.8e+02      86     117 ..     598     631 ..     575     643 .. 0.65
   2 ?    6.3   1.0    0.0017       6.1      44     120 ..     650     726 ..     639     734 .. 0.82
   3 ?   11.7   0.0   3.9e-05      0.14      63     129 ..     718     782 ..     713     796 .. 0.80
   4 ?    4.6   0.1    0.0059        21      46     102 ..     770     826 ..     766     841 .. 0.75
   5 ?    2.0   0.1     0.036   1.3e+02      64     127 ..     956    1019 ..     934    1027 .. 0.79
   6 ?    2.3   0.1     0.028     1e+02      67     104 ..    1033    1070 ..    1020    1093 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.16
       LRR_9  86 vlPnleelvltnnel..qeladldPlaslkklel 117
                  l nl++l l++n+l  ++la++  ++sl++l+l
  CCE30148.1 598 RLANLTSLNLSSNKLgnESLATILQMTSLRDLKL 631
                 4778999999999973346788877777777764 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0017
       LRR_9  44 fdtidlsdndirkld.gfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsl 120
                 ++ +dl  n+i  l   +  + rl++l +n+n++  i  +    lP l+el + +n+l+ +   +P+  l  l++l  
  CCE30148.1 650 LEMLDLHGNNITALPpHMERMSRLRILNMNENQLEMIPFDSLCKLP-LTELHVRKNRLTGVLIPKPVEGLTYLQTLDA 726
                 56789999999999625678999**************999999999.8999999999998888899988888888765 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 3.9e-05
       LRR_9  63 lkrlktlllnnnrivriaeglee.vlPnleelvltnnelqeladldPlaslkklellsllknpvtnkk 129
                 l  l+tl  + nr++++ ++ ++  lP ++++ l+ n++q++ d   +as  +l +lsl +n +++ +
  CCE30148.1 718 LTYLQTLDASANRLTHLVPEDGQvNLPAVHSVSLSANRIQHFPD---IASWTSLLTLSLDENHIARIP 782
                 4557889999*****98766555269******************...678888888999888887665 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.0059
       LRR_9  46 tidlsdndirkl.dgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqe 102
                 t+ l++n i ++ ++f  l++l+   +++n i  i ++++++   l+ + lt+n l++
  CCE30148.1 770 TLSLDENHIARIpENFTSLQKLRYADFSSNDISVIPPEIARM-QGLTMIRLTGNPLRD 826
                 567778888777578888888888888888888888888764.567777777777665 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.036
       LRR_9   64 krlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpvtn 127 
                  ++++ + l  n + +i   l  +  +l+ l l++++l   + l    +l+ l+ ls+++n vt+
  CCE30148.1  956 NQVRQIQLHHNPLAKIPIPLTAFGLTLSILSLSHSHLAGESYLSEPLELPALRELSIMSNQVTS 1019
                  5677778888888888888888888899999999999888888766799***********9986 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.028
       LRR_9   67 ktlllnnnrivriaegleevlPnleelvltnnelqela 104 
                  + l  + nr++ +  +l+++ P+l+ l+  +n+l++l 
  CCE30148.1 1033 EKLDASLNRLTALPLDLKRTFPQLSVLLAFSNQLTQLE 1070
                  44556679********************9999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 7512.18
//
Query:       CCE30149.1  [L=123]
Description: uncharacterized protein CPUR_03997 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 967.06
//
Query:       CCE30150.1  [L=676]
Description: uncharacterized protein CPUR_03998 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-10   40.5   0.0    0.00033   21.2   0.0    4.9  5  Ank_2       Ankyrin repeats (3 copies)
    3.8e-09   36.0   0.4        3.4    8.5   0.0    6.4  7  Ank_3       Ankyrin repeat
    1.6e-07   31.4   1.7      0.023   15.1   0.0    5.3  6  Ank         Ankyrin repeat
    6.3e-07   29.8   0.1       0.19   12.4   0.0    4.6  4  Ank_4       Ankyrin repeats (many copies)
    3.3e-06   27.3   0.7       0.92    9.9   0.0    6.1  7  Ank_5       Ankyrin repeats (many copies)
     0.0069   16.3   1.0      0.016   15.1   0.1    2.2  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0031       9.2      53      80 ..     142     169 ..      74     171 .. 0.74
   2 !   21.2   0.0   1.1e-07   0.00033      14      80 ..     225     312 ..     211     314 .. 0.69
   3 ?    4.4   0.0      0.02        59      49      81 ..     356     397 ..     339     399 .. 0.70
   4 ?    4.1   0.0     0.023        69      11      26 ..     383     402 ..     369     488 .. 0.48
   5 ?   -0.5   0.0      0.63   1.9e+03      32      72 ..     603     653 ..     574     657 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0031
       Ank_2  53 grtpLhyAarsghleivklLlekgadin 80 
                   t+Lh+A+ + + +i++ Lle ga ++
  CCE30150.1 142 TSTALHLAVVKRNWRIANRLLEMGARLD 169
                 569********999*******9999775 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 1.1e-07
       Ank_2  14 klLl.egadpn......k....ngktaLhyAakngnlei..vklLleh........adndgrtpLhyAarsghleivklLlekgadin 80 
                 + L+ +ga  +      +       ++Lh+Aa  +++++   ++L ++         ++++ tpL++A rsg ++ +k+L+++gad +
  CCE30150.1 225 EALItQGASRDammitsQdgtaSRISILHFAAADTSVNLdeWRFLFDAfpehinevCTEKNITPLQAALRSGCIQGMKILVQNGADTE 312
                 55656553333333332134456689*******997776669****9445565444336677********************9*9975 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.02
       Ank_2  49 adndgrtpLhyAars........g.hleivklLlekgadinl 81 
                 ++ dg ++L  A+ +        g   ++++lLle+gad+n 
  CCE30150.1 356 VNPDGDSVLVSAILYfmsspvnyGdAKRVIDLLLEHGADPNS 397
                 5577888888888777765553313578999********995 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.023
       Ank_2  11 elvklLl.egadpn..k.ng 26 
                  +++lLl +gadpn  + ng
  CCE30150.1 383 RVIDLLLeHGADPNsiSyNG 402
                 57777777777777542333 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.63
       Ank_2  32 yAakngnleivklLleh......adndgrtpL....hyAars.ghleivklL 72 
                 y+a ++  + ++ L+         d dg++pL    h+A+ + g ++++++L
  CCE30150.1 603 YSAAETIDD-ISRLIRRgvnitlPDIDGHNPLelfrHLAIVKaGASDVLEFL 653
                 334433222.455554333333434667777432445666666665666655 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0011       3.4       3      30 ..     143     169 ..     141     170 .. 0.90
   2 ?   -2.5   0.0       4.5   1.3e+04       5      27 ..     211     232 ..     210     235 .. 0.72
   3 ?    3.4   0.0     0.053   1.6e+02       4      30 ..     250     278 ..     248     279 .. 0.81
   4 !    8.2   0.0    0.0014       4.3       2      28 ..     285     310 ..     284     313 .. 0.91
   5 !    7.5   0.0    0.0026       7.7      12      30 ..     378     396 ..     376     397 .. 0.80
   6 ?   -2.3   0.0       3.7   1.1e+04       4      27 ..     457     482 ..     457     483 .. 0.67
   7 ?   -2.9   0.0       5.8   1.7e+04      18      29 ..     612     622 ..     603     623 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0011
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                  t+LhlA+   n  i+  Lle +ga ++
  CCE30150.1 143 STALHLAVVKRNWRIANRLLE-MGARLD 169
                 59*******************.999776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.5
       Ank_3   5 pLhlAarsgnleivkfLlenkga 27 
                 pL+lA  ++++  +++L+   ga
  CCE30150.1 211 PLFLAFFQNDPITAEALIT-QGA 232
                 5666666677766999999.776 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.053
       Ank_3   4 tpLhlAarsgnlei..vkfLlenkgadvn 30 
                 ++Lh+Aa  +++++   +fL++ +   +n
  CCE30150.1 250 SILHFAAADTSVNLdeWRFLFDAFPEHIN 278
                 79**********65559999997777766 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0014
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 + tpL  A+rsg++  +k L++ +gad
  CCE30150.1 285 NITPLQAALRSGCIQGMKILVQ-NGAD 310
                 57********************.8*99 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0026
       Ank_3  12 sgnle.ivkfLlenkgadvn 30 
                 +g+ + ++++Lle +gad+n
  CCE30150.1 378 YGDAKrVIDLLLE-HGADPN 396
                 5666558******.9****9 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 3.7
       Ank_3   4 tpLhlAarsgnl..e.ivkfLlenkga 27 
                 +pL +A+++ +   e ++ +L e +ga
  CCE30150.1 457 SPLATAILNRDAqpEwLCNMLYE-YGA 482
                 57777888777743357888888.776 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 5.8
       Ank_3  18 vkfLlenkgadv 29 
                 +  L++ +g+++
  CCE30150.1 612 ISRLIR-RGVNI 622
                 788999.99987 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0011       3.2       4      28 ..     144     169 ..     143     172 .. 0.85
   2 ?   -2.6   0.0       3.2   9.6e+03      18      28 ..     224     235 ..     211     237 .. 0.71
   3 ?    1.9   0.0      0.12   3.6e+02       4      28 ..     287     312 ..     285     314 .. 0.76
   4 !   15.1   0.0   7.8e-06     0.023       1      29 [.     359     397 ..     359     399 .. 0.82
   5 ?   -3.8   0.0         6   1.8e+04      10      22 ..     411     418 ..     406     425 .. 0.70
   6 ?   -2.0   0.0         2   5.9e+03      11      31 ..     608     626 ..     587     627 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
                 BHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnln 28 
                 T+LHlA+   ++ri+  LL  GA l+
  CCE30150.1 144 TALHLAVVKRNWRIANRLLeMGARLD 169
                 9******888899**99996698666 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.2
                 HHHHH.TTTSTT CS
         Ank  18 iklLL.hGAnln 28 
                 +++L+ +GA+ +
  CCE30150.1 224 AEALItQGASRD 235
                 568999999866 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.12
                 BHHHHHHHHTTHHHH...HHHH.TTTSTT CS
         Ank   4 TPLHlAatngkkrii...klLL.hGAnln 28 
                 TPL  A + g   +i   k L+ +GA+  
  CCE30150.1 287 TPLQAALRSG---CIqgmKILVqNGADTE 312
                 9***999999...7744466887799975 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 7.8e-06
                 TSBBHHHHHH........HHTT.HHHHHHHH.TTTSTTC CS
         Ank   1 dGnTPLHlAa........tngk.kriiklLL.hGAnlna 29 
                 dG+++L  A+        ++g+ kr+i lLL hGA++n+
  CCE30150.1 359 DGDSVLVSAIlyfmsspvNYGDaKRVIDLLLeHGADPNS 397
                 78888888878777777766667**************96 PP

  == domain 5  score: -3.8 bits;  conditional E-value: 6
                 HHHTTHHHHHHHH CS
         Ank  10 atngkkriiklLL 22 
                 +     ++i++L+
  CCE30150.1 411 S-----NVIHELV 418
                 3.....3898886 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 2
                 HHTTHHHHHHHH.TTTSTTCBT CS
         Ank  11 tngkkriiklLL.hGAnlnald 31 
                 t++    i+ L+ +G n+++ d
  CCE30150.1 608 TID---DISRLIrRGVNITLPD 626
                 444...4566887788888766 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.045   1.4e+02       2      31 ..     143     172 ..     142     182 .. 0.82
   2 !   12.4   0.0   6.3e-05      0.19       3      48 ..     250     298 ..     248     305 .. 0.85
   3 !    5.7   0.0    0.0078        23       3      39 ..     287     322 ..     287     323 .. 0.91
   4 !    8.0   0.0    0.0015       4.5      15      36 ..     383     403 ..     365     407 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.045
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqd 31 
                 +taLh a+ + + +++ +Lle ga ++  +
  CCE30150.1 143 STALHLAVVKRNWRIANRLLEMGARLDIPC 172
                 699*****************9998877654 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 6.3e-05
       Ank_4   3 taLhyaai..sgrlelvrlLlekgad.inaqdnrsGetalhiAakrgnv 48 
                 ++Lh aa+  s +l+  r+L++  ++ in+++ +   t+l+ A++ g +
  CCE30150.1 250 SILHFAAAdtSVNLDEWRFLFDAFPEhINEVCTEKNITPLQAALRSGCI 298
                 689*****77777777******99999****99*9*********98855 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0078
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetal 39 
                 t+L +a  sg+++  ++L+++gad  a  ++s +t+l
  CCE30150.1 287 TPLQAALRSGCIQGMKILVQNGADTEAN-PGSSRTPL 322
                 68889999****************8888.99999998 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0015
       Ank_4  15 elvrlLlekgadinaqdnrsGe 36 
                 ++++lLle+gad+n   + +G+
  CCE30150.1 383 RVIDLLLEHGADPNSI-SYNGL 403
                 789***********98.88876 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00031      0.92      15      43 ..     141     169 ..     127     175 .. 0.82
   2 ?    1.4   0.0      0.14   4.3e+02      18      54 ..     250     290 ..     241     292 .. 0.77
   3 ?    2.4   0.0     0.068     2e+02       5      52 ..     273     321 ..     269     322 .. 0.77
   4 ?    0.6   0.0      0.26   7.6e+02       1      13 [.     388     399 ..     378     406 .. 0.69
   5 ?    0.4   0.0      0.29   8.6e+02       4      28 ..     444     467 ..     438     486 .. 0.69
   6 ?    3.8   0.0     0.026        79      35      55 ..     615     635 ..     610     636 .. 0.91
   7 ?   -2.4   0.0       2.2   6.5e+03      25      35 ..     642     653 ..     638     653 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00031
       Ank_5  15 ggntpLhvAakygaadvvrlLlargadln 43 
                 +  t+Lh+A+ +++++++++Ll++ga l+
  CCE30150.1 141 ETSTALHLAVVKRNWRIANRLLEMGARLD 169
                 455*******************7777555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.14
       Ank_5  18 tpLhvAak..ygaadvvrlLl.argadlnltdsrG.ltald 54 
                 ++Lh+Aa    +++d  r+L+ a+++++n  + +   t+l+
  CCE30150.1 250 SILHFAAAdtSVNLDEWRFLFdAFPEHINEVCTEKnITPLQ 290
                 57888887556899999999999999999776665577765 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.068
       Ank_5   5 gpadvnrldgggn.tpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                 +p+ +n  + ++n tpL  A + g+ + +++L+ +gad+ +  ++ +t+
  CCE30150.1 273 FPEHINEVCTEKNiTPLQAALRSGCIQGMKILVQNGADTEANPGSSRTP 321
                 5666666677777799999999**************9987766555555 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.26
       Ank_5   1 Llehgpadvnrld 13 
                 Llehg ad+n   
  CCE30150.1 388 LLEHG-ADPNSIS 399
                 67777.6666654 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.29
       Ank_5   4 hgpadvnrldgggntpLhvAakyga 28 
                 +g  dv +++++  +pL +A+ ++ 
  CCE30150.1 444 KG-LDVTTTEPWLPSPLATAILNRD 467
                 44.7777777777788888888554 PP

  == domain 6  score: 3.8 bits;  conditional E-value: 0.026
       Ank_5  35 LlargadlnltdsrGltaldl 55 
                 L+ rg++++l d +G ++l+l
  CCE30150.1 615 LIRRGVNITLPDIDGHNPLEL 635
                 7799***************97 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 2.2
       Ank_5  25 k.ygaadvvrlL 35 
                   +ga+dv+++L
  CCE30150.1 642 VkAGASDVLEFL 653
                 449*****9997 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   5.3e-06     0.016       3      42 ..      44      81 ..      42      83 .. 0.93
   2 ?   -3.3   0.1         3     9e+03      38      45 ..     499     506 ..     497     508 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.3e-06
  F-box-like  3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLW 42
                 LP E+ l I s+L++s  + l +++  W+ ++   p L+
  CCE30150.1 44 LLPLELKLLIMSHLNASGFSHLGQTSQFWYHFV--IPKLY 81
                69*****************************99..77888 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3
  F-box-like  38 tplLWrrl 45 
                 tp+LW++ 
  CCE30150.1 499 TPRLWNHY 506
                 789**986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4844.44
//
Query:       CCE30151.1  [L=490]
Description: related to component of actin cortical patches LAS17 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0058   16.3  18.6       0.35   10.4  13.3    2.3  2  SR-25     Nuclear RNA-splicing-associated protein
      0.006   16.6   4.2      0.006   16.6   4.2    2.6  3  PRIMA1    Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4  13.3   3.9e-05      0.35      46      96 ..     195     243 ..     178     253 .. 0.53
   2 !    8.4   0.2   0.00016       1.4      66     138 ..     373     454 ..     359     465 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.9e-05
       SR-25  46 ekeeerskekkkkkrrrssssssssssssssssssssssssddrkkrgkkk 96 
                 + +++rs++ +  k++++ sss sssss ssss++++  s+    k+gk+k
  CCE30151.1 195 RDRRDRSRDSRATKAHTHHSSSRSSSSSRSSSSAGTTVRSEY--PKKGKTK 243
                 223366666666666655665555555555555555444443..3444444 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00016
       SR-25  66 sssssssssssssss....ssssssdd.....rkkrgkkkdkkkkkkkkkkkkkkekkkakekakaeaaaaealpgpsldqw 138
                 s s+ssss  ss  s      + s+++      + r+++++++  +++ k  ++ + ++ k + ++e+ ++e+lp  +l  +
  CCE30151.1 373 SPSRSSSSWDSSHYSrrrhHQHHSDEGalvlaSRPRSRSRSRRDIRSEIKALQRELVHRPKVEVEREVVRTERLPNGELIIY 454
                 3333333333333220000233444449999888888888888888888888888889999889999999999998877555 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.4   4.1         2   1.8e+04      26      38 ..     141     155 ..     133     158 .. 0.46
   2 !   16.6   4.2   6.7e-07     0.006       4      53 ..     302     351 ..     299     364 .. 0.85
   3 ?   -0.1   0.1     0.098   8.7e+02      21      44 ..     461     484 ..     453     488 .. 0.78

  Alignments for each domain:
  == domain 1  score: -6.4 bits;  conditional E-value: 2
      PRIMA1  26 ypplppppp..pppp 38 
                 y p+p p     ppp
  CCE30151.1 141 YTPIPLPKArgLPPP 155
                 344444432112333 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 6.7e-07
      PRIMA1   4 scsktvaekvtescqeacqcrrypplpppppppppprllsltaaestvsp 53 
                 s  ++v e+++e   e+ q  ++pp p+ + ppppp +++++aa ++ + 
  CCE30151.1 302 SAGNLVEERIEERRTEIFQAPARPPPPATAVPPPPPTVIVAPAAAPAPVY 351
                 566778899999****************************9999887655 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.098
      PRIMA1  21 cqcrrypplpppppppppprllsl 44 
                 +  r++pp     +  ppp ll +
  CCE30151.1 461 TVARPKPPRIEKDKKGPPPGLLRA 484
                 456999999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3519.31
//
Query:       CCE30152.1  [L=105]
Description: uncharacterized protein CPUR_04000 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 840.71
//
Query:       CCE30153.1  [L=129]
Description: uncharacterized protein CPUR_04001 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-15   56.0   0.0    5.1e-15   55.6   0.0    1.2  1  4HBT      Thioesterase superfamily
    0.00023   21.3   0.0    0.00034   20.7   0.0    1.3  1  DUF4442   Domain of unknown function (DUF4442)
     0.0086   16.3   0.0       0.01   16.1   0.0    1.1  1  4HBT_3    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   8.5e-19   5.1e-15       2      78 ..      23      99 ..      22     100 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 8.5e-19
                SSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-.BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEE CS
        4HBT  2 GvvhgGvylallDeaagaalrslggrgilvvvvelsidflrp.vrlgdeltvearvlrlgrtsavvevevrdedgrlv 78
                +++hgG++++l+D a+++a++s g++    v  +l++++l+p + +gd l  +a++ ++g+t a+++v++ +++g+l+
  CCE30153.1 23 NTIHGGTLASLVDLAGSLAVASTGRF-ATGVSTDLNVTYLAPgGNPGDLLKGTATCDKIGKTLAYTTVTFINSKGQLA 99
                699***********************.***************99******************************9987 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   5.7e-08   0.00034      27      92 ..       4      70 ..       2     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 5.7e-08
                ETTEEEEEE---GGGB-TTSSB-HHHHHHHHHHHHHHHHHHHS-TTEEEEEEEEEEEE-S-..--S-E CS
     DUF4442 27 epgraevrlkkrrrvrNhigtvHAiAicnlaElamGllaeatlpdthrwipkgmevdYlak..atgdl 92
                e+gr++ +l   +++ N + t+H++ +++l++la G la a++++ +  + +  +v Yla+    gdl
  CCE30153.1  4 EAGRVNFELDIHKNHTNRLNTIHGGTLASLVDLA-GSLAVASTGRFATGVSTDLNVTYLAPggNPGDL 70
                67999999************************98.66788999*****************93333554 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.7e-06      0.01     162     246 ..      25     106 ..      13     108 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.7e-06
                 SHHHHHHHHTT-..-GGGGTSS-......SB--EEEEEEEE-S--..S-...EEEEEE-SEEETTEEEEEEEEE-TTS-EEEEEEEEE CS
      4HBT_3 162 ahlaaLaylsDsf.pvprvhglrldaeasgwmpsldltiyfhrep..aedeWllleaetpwagdgrglvearlwdedGrlvAtstQeg 246
                  h  +La l+D     ++v ++ +      + +s+dl++   + p  ++++ l   a++ ++g   +++++++ +++G+l A+ +++ 
  CCE30153.1  25 IHGGTLASLVDLAgS-LAVASTGRF----ATGVSTDLNVTYLA-PggNPGDLLKGTATCDKIGKTLAYTTVTFINSKGQLAARGSHTK 106
                 566679999999645.555555542....3458*********9.8663499********************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 962.22
//
Query:       CCE30154.1  [L=117]
Description: uncharacterized protein CPUR_04002 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 908.48
//
Query:       CCE30155.1  [L=126]
Description: uncharacterized protein CPUR_04003 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0069   16.2   0.0     0.0082   16.0   0.0    1.2  1  Phage_integrase  Phage integrase family
  ------ inclusion threshold ------
      0.087   13.2   0.9       0.14   12.6   0.9    1.5  1  HTH_31           Helix-turn-helix domain
       0.24   11.3   0.0        0.5   10.2   0.0    1.5  1  UBA_3            Fungal ubiquitin-associated domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.4e-06    0.0082     108     169 ..      40     101 ..      16     104 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.4e-06
                      HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCC CS
  Phage_integrase 108 rqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthv 169
                      r  v +a++r + + gi  ++t+H++R+ +a +    g+  +  + l+ +ss +  ++Yt++
       CCE30155.1  40 RDHVVGALRRRCTAIGIPLHVTGHSFRRGAAQHAHDIGLTRDQMKTLGRWSSDAVDRYYTAA 101
                      56778899999*****************************************9999999986 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.9   2.3e-05      0.14       7      39 ..      45     102 ..      14     112 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
      HTH_31   7 ralRera.........................GLsqeevAerlgvsestlsrlEqGrr 39 
                  alR+r+                         GL+++++  + ++s + + r+ +++ 
  CCE30155.1  45 GALRRRCtaigiplhvtghsfrrgaaqhahdiGLTRDQMKTLGRWSSDAVDRYYTAAS 102
                 57888889999999999999999999***************************99876 PP

>> UBA_3  Fungal ubiquitin-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   8.4e-05       0.5      20      32 ..      37      49 ..      32      51 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 8.4e-05
                T--HHHHHHHHHH CS
       UBA_3 20 GFekdkvievLkr 32
                GFe+d v+ +L+r
  CCE30155.1 37 GFERDHVVGALRR 49
                9***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1037.81
//
Query:       CCE30156.1  [L=842]
Description: uncharacterized protein CPUR_04004 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-10   41.5   0.0      2e-10   40.6   0.0    1.5  1  RVT_1        Reverse transcriptase (RNA-dependent DNA polymer
    6.2e-05   23.2   0.0    0.00017   21.8   0.0    1.6  1  RT_RNaseH    RNase H-like domain found in reverse transcripta
  ------ inclusion threshold ------
      0.061   13.4   0.0       0.16   12.0   0.0    1.7  1  RT_RNaseH_2  RNase H-like domain found in reverse transcripta


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   3.4e-14     2e-10      53     196 ..     444     564 ..     424     584 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 3.4e-14
                 .........HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHH CS
       RVT_1  53 davedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnell 151
                 +a++d+l+ +++ + +++++k Dlk+aF  +p++   r l  f+ +                           +y+++ lp+G+ ++P++fnlf + l 
  CCE30156.1 444 TALRDMLQMVRRAGPSCHIVKKDLKDAFRVIPVASCVRWLLGFTWD-------------------------DSSYTENCLPFGLRTAPFIFNLFAEALH 517
                 45577888889999********************************.........................89************************** PP

                 TT-T......TEEECTTEEEEEESS.HHH.HHHHHHHHHHHHHHTT- CS
       RVT_1 152 relrkrakgvtllrYaDDililsks.kee.lqelleaveewlkesgl 196
                  +l+   ++  l++Y DD++++    ++  +  + ++ ++  +  gl
  CCE30156.1 518 WMLEALLPDTLLCHYLDDFVFVLPAaRSTrAPLVHSTWQQLTSYLGL 564
                 ****999*************998874333555555555555555555 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.8e-08   0.00017       6      92 ..     692     785 ..     687     796 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.8e-08
                 EEEEEEECTEEEEEEEEEETTE...EEEE......EEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS--EEEE-SS--TTTTT----.- CS
   RT_RNaseH   6 filetDAsddgigavLsqreedge.erpi......afaSrklsgaernystiekellAivaalkkfrhylqgrkftvitDhknlkyllskksln 92 
                 f+l+tDAs++g+g+  +  +  ++ +r        + + r + ++e   ++   e++Ai  a++++    q++ ++++tD++  ++ ++k ++ 
  CCE30156.1 692 FHLFTDASNTGLGGFYYRGHTAQSdWRTAlplpqdQSFARPILPTEAGLHINTTEIIAIATAIDTWASTWQHATVIIHTDNTTAQSGFTKGHTR 785
                 89***************94333334443311133356789999***************************************999888766644 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.7e-05      0.16      27      98 ..     687     766 ..     679     768 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
  RT_RNaseH_2  27 pdkp.filetDaSdtgigavLsqedddgk.erpi......afaSrklskaernysttekellAivwalkkfrhyllgrkf 98 
                   ++p f+l tDaS+tg+g+  +  +  ++ +r+       + + r + ++e   ++   e+ Ai  a++++    +  ++
   CCE30156.1 687 ANRPvFHLFTDASNTGLGGFYYRGHTAQSdWRTAlplpqdQSFARPILPTEAGLHINTTEIIAIATAIDTWASTWQHATV 766
                  5555489***************9999998888763334445799999999999999999999999999999877666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 6090.49
//
Query:       CCE30157.1  [L=118]
Description: uncharacterized protein CPUR_04005 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 939.13
//
Query:       CCE30158.1  [L=854]
Description: uncharacterized protein CPUR_04006 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-31  107.8   0.1    3.6e-31  107.8   0.1    2.0  2  Rad4            Rad4 transglutaminase-like domain
    1.2e-28   99.3   0.2      3e-28   98.0   0.2    1.7  1  BHD_3           Rad4 beta-hairpin domain 3
    1.5e-21   76.0   0.0    3.8e-21   74.7   0.0    1.8  1  BHD_1           Rad4 beta-hairpin domain 1
      2e-19   70.3   0.3      2e-19   70.3   0.3    3.6  3  BHD_2           Rad4 beta-hairpin domain 2
     0.0037   17.7   3.1      0.066   13.7   2.0    3.0  2  Transglut_core  Transglutaminase-like superfamily
  ------ inclusion threshold ------
        2.1    8.9   6.7          2    9.0   0.4    3.2  3  POX             Associated with HOX


Domain annotation for each model (and alignments):
>> Rad4  Rad4 transglutaminase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   1.5       4.2   1.2e+04      15      29 ..     362     375 ..     353     386 .. 0.34
   2 !  107.8   0.1   1.2e-34   3.6e-31      17     146 ..     428     557 ..     411     558 .. 0.92

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 4.2
                 ---......--TTHH CS
        Rad4  15 kskkketkkkkkrlk 29 
                 +++ +++ ++++++k
  CCE30158.1 362 QKS-TTSATTTSNAK 375
                 222.11111111111 PP

  == domain 2  score: 107.8 bits;  conditional E-value: 1.2e-34
                 -........--TTHHHHHTTS-SEEEEEEETTTTEEEEEESSSS-EESS--TTS--TGGGS----EEEEE-TTS-EEE-HHHH-T.TCCCCHGGGSGG. CS
        Rad4  17 k..kketkkkkkrlkdkdlpypvyWvEvfspekkkwisvdplvgstiekkeileplaekakqvlsYVvAfdsdgsakDVTrRYlsdysnsktkklrve. 112
                    k++++++++    +++  pvyW+Ev+++ ++kw +vdp+v+ +  k + +ep  ++ +++lsYVvAf++dg+akDVTrRY+++ +++kt+klr+  
  CCE30158.1 428 PapKPQKTYSSEPVRIRESAHPVYWIEVLDKGHQKWQPVDPVVTHSFWKPKLFEPPITDRENSLSYVVAFEADGTAKDVTRRYAKA-FTAKTRKLRIDt 525
                 13357888999999999***************************999*************************************98.***********8 PP

                 GSHHHHHHHHHHHHHH--S---H..HHHHHHHHH CS
        Rad4 113 kskeekkWfesvlrplekrnkertevdalEdael 146
                 + +++ +W+++v++pl+ +++++   d +Ed el
  CCE30158.1 526 ALDDGGQWWRKVMKPLRPQRASD--LDLIEDNEL 557
                 8899*******************..*******99 PP

>> BHD_3  Rad4 beta-hairpin domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.2     1e-31     3e-28       1      75 [.     698     770 ..     698     771 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 1e-31
                 ----TTS-EE-SSGGGS-TTEEEEE-TTHHHHHHHCT---EEEEEEEEE-SS-EE..EEEEEEEEEGGGHHHHHH CS
       BHD_3   1 vPkNeygnieifkpsmlPegavhislkgaakaakklgidyapAvvGFefkgrrgkgiPvidGivVaeedeeavle 75 
                 vPkN++gni++++psm+P+g+vhi +++aa+aa ++g+dyapA++GF f+gr+g+  +v++GivVa e++ea+++
  CCE30158.1 698 VPKNKFGNIDVYVPSMIPQGGVHIIHEHAARAAHLIGVDYAPALTGFSFQGRHGT--AVLRGIVVAREYQEAIQA 770
                 8*************************************************99999..***************986 PP

>> BHD_1  Rad4 beta-hairpin domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   1.3e-24   3.8e-21       1      51 []     563     620 ..     563     620 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 1.3e-24
       BHD_1   1 kepmPenlqdfKnhplYvLerhLkrnEvlhpdakpvgvfkk.......kepVYrRsdV 51 
                 +epmP+n+qdfK+hp+Y+LerhL+r+E+l  da+p+g+++         e++YrR+dV
  CCE30158.1 563 REPMPKNVQDFKDHPVYALERHLRRHEALALDARPSGTLTAgagsrgtLEKIYRRKDV 620
                 69*************************************4366777779********9 PP

>> BHD_2  Rad4 beta-hairpin domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.8   8.5         6   1.8e+04      19      40 ..      45     111 ..      37     128 .. 0.62
   2 !   70.3   0.3   6.7e-23     2e-19       1      63 [.     624     690 ..     624     691 .. 0.93
   3 ?   -4.7   1.4         6   1.8e+04      30      37 ..     821     828 ..     813     840 .. 0.39

  Alignments for each domain:
  == domain 1  score: -5.8 bits;  conditional E-value: 6
       BHD_2  19 PvKrvksraktarkkredekk.............................................e 40 
                 P++ +k+r+  a++++  ++k                                             e
  CCE30158.1  45 PARPLKRRRPNAEREVGRRMKsspdqkrpklegpgsdedsgediefedvplptptvqtmeadddddE 111
                 6777777777766666666666677777777777766666666666666666666666655544332 PP

  == domain 2  score: 70.3 bits;  conditional E-value: 6.7e-23
       BHD_2   1 rSaerWyrlGReVkpgelPvKrvksraktarkkredekk....eeeeeeeegevpLYgewQTelYvp 63 
                 rS  +Wyr+GR Vkp+e+PvK++++ra+ + ++r+d+++    ++e+++  +++pLY+ +QTelY+p
  CCE30158.1 624 RSTGKWYRMGRLVKPNEIPVKWIPKRARPRDARRDDKAAhtrdDDEDDDGLAGIPLYSMEQTELYEP 690
                 8999************************9999999888888888888888****************9 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 6
       BHD_2  30 arkkrede 37 
                  + + +++
  CCE30158.1 821 EAEAEAER 828
                 11111111 PP

>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   2.0   2.2e-05     0.066      45      88 ..     307     368 ..     284     468 .. 0.60
   2 ?   -2.7   0.0       2.7     8e+03      55      71 ..     508     524 ..     491     525 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.2e-05
  Transglut_core  45 avletgkGncedfaslfvallRalGipaRvvtgylsgeeekeq..................s 88 
                     ++ ++ +G     a+l++a+lR++G+ aR+v  +++ + + +                    
      CCE30158.1 307 DAAKQLQGSRDVGAQLYCAMLRSVGVRARLVCSLQPLACTTSAppmpksssarsgqksttsA 368
                     5555667888999******************9998854444334444444444444444440 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.7
  Transglut_core  55 edfaslfvallRalGip 71 
                     + +a++f+a  R l+i 
      CCE30158.1 508 RRYAKAFTAKTRKLRID 524
                     67999999999999985 PP

>> POX  Associated with HOX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.4   0.00067         2      28      95 ..     152     219 ..     103     224 .. 0.67
   2 ?   -0.2   0.4      0.46   1.4e+03      32      68 ..     362     401 ..     336     414 .. 0.37
   3 ?    0.8   0.0      0.22   6.7e+02       7      24 ..     764     805 ..     759     844 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00067
         POX  28 sssaskkkkkkakkskeseegegsssssssass.....saelssaer.qelqrkkakLlsmldeVdrrYrqYld 95 
                 ss+ +++ + + +++k+++++ +sss      +      ++ls+aer + +q  +a+L+ +l  V rr   + d
  CCE30158.1 152 SSEENSHLQLNLTAQKAAQTAATSSS------KrpgerRKPLSKAEReHRVQVHQAHLVCLLAHVARRNHWCND 219
                 22222222222222222222222222......123345777777776267999***************877766 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.46
         POX  32 skkkkkkakkskeseegegsssssssass.............saelssae 68 
                 +k++++++++s+++++++          +             ++ ls+a+
  CCE30158.1 362 QKSTTSATTTSNAKTRTQ----------DalekykalvnssrENALSEAS 401
                 111111111111111111..........0111122222233344444444 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.22
         POX   7 YlkaaqelLdevvsvga........................k 24 
                 Y +a+q +L+ +++v++                        +
  CCE30158.1 764 YQEAIQAVLEGIADVQQemederrgwaarrmwrrmlmglriR 805
                 88999**********733445555555555555555555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1257  (0.0701099); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 6025.28
//
Query:       CCE30159.1  [L=334]
Description: related to dicarboxylate carrier protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-55  182.5   5.3    4.8e-19   68.1   0.1    3.3  3  Mito_carr        Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.83    8.8   4.0       0.87    8.7   0.0    2.7  3  Serine_protease  Gammaproteobacterial serine protease


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.2   5.1e-20   4.6e-16       8      93 ..      47     132 ..      40     135 .. 0.93
   2 !   57.0   0.1   1.5e-19   1.4e-15       3      96 ..     143     238 ..     141     239 .. 0.91
   3 !   68.1   0.1   5.4e-23   4.8e-19       6      88 ..     245     328 ..     242     332 .. 0.90

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 5.1e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                  ++ Ggl+g+vat+v++P+d+vK+r+q++++ s+   + + l+v ++i+ +  ++ ly Gl++ llr+a+++ ++ ++++tl + l
  CCE30159.1  47 PFINGGLSGMVATSVVQPVDMVKVRIQLAGEGSSGGPKPSPLSVTRQIIASGKVMDLYTGLSAGLLRQAVYTTARIGFFDTLMTSL 132
                 699*****************************99987777*****************************************98766 PP

  == domain 2  score: 57.0 bits;  conditional E-value: 1.5e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa..ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96 
                 ++++ + +aG++ag +a+++ +P d++ +r+q+++ +  ++++++  ++d+l +i k+eG+ +l+ G+ p+++r +  ++ +++++   k+ l+kk
  CCE30159.1 143 VGFADRAAAGLTAGGLAAMIGNPADLALIRMQSDGLKPLAERKNYksVVDALTSIAKSEGIGALWAGAAPTVVRAMGLNFGQLAFFSEAKEQLKKK 238
                 7889999**************************99997655555456*******************************************999886 PP

  == domain 3  score: 68.1 bits;  conditional E-value: 5.4e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyet 88 
                 +++l a+++ag +a+++  P+d+vKtrlq q+k s  +  ++ ++d++ k+ k+eGl+ +yrG++   +r+ap +++++ + ++
  CCE30159.1 245 AQTLSASAIAGFFASFFSLPFDFVKTRLQKQSKGSDGKVAYKgMVDCFAKVAKQEGLLRFYRGFGTYYVRIAPHAMVTLIVADY 328
                 57899*************************9999866544446**********************************9988775 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.058   5.2e+02     177     194 ..      48      65 ..      41      75 .. 0.81
   2 ?   -1.8   0.1      0.15   1.4e+03     175     192 ..     147     164 ..     125     170 .. 0.82
   3 ?    8.7   0.0   9.7e-05      0.87     151     226 ..     220     297 ..     204     316 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.058
  Serine_protease 177 llaGalsGviAtvlttif 194
                      ++ G lsG++At +  ++
       CCE30159.1  48 FINGGLSGMVATSVVQPV 65 
                      678999999999887765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.15
  Serine_protease 175 nkllaGalsGviAtvltt 192
                       + +aG ++G +A+++  
       CCE30159.1 147 DRAAAGLTAGGLAAMIGN 164
                      567888899988888765 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 9.7e-05
  Serine_protease 151 vnFaalgvvedeiakflkindel...ynkllaGalsGviAtvlttifnsykDkkllaskvengrlltaspftllkqlks 226
                      +nF  l+++ +   ++lk +++l    + l a a++G  A++++ +f   k +   +sk  +g++  +  +  + ++++
       CCE30159.1 220 LNFGQLAFFSEAK-EQLKKKTDLsprAQTLSASAIAGFFASFFSLPFDFVKTRLQKQSKGSDGKVAYKGMVDCFAKVAK 297
                      6788887776654.3444444331115678899********************************99998888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2456.09
//
Query:       CCE30160.1  [L=465]
Description: uncharacterized protein CPUR_04008 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-98  330.6  29.2    2.5e-98  330.3  29.2    1.1  1  BUD22     BUD22


Domain annotation for each model (and alignments):
>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.3  29.2  1.4e-102   2.5e-98       5     432 .]      20     465 .]      16     465 .] 0.75

  Alignments for each domain:
  == domain 1  score: 330.3 bits;  conditional E-value: 1.4e-102
       BUD22   5 lkkLrkalkkakgferqklvkklKtakkekkskklerleeelealKslDleqiAekilaskllktkklaeseelpealksikdkkpksnpeekneelek 103
                 + ++ +alk +kgferq+l+k+++++  + +++k++rle+e+ +lKslDl+q+A+++l+ +llk k++a s++lpe+l+  +++kp+++pee+      
  CCE30160.1  20 EDEVFRALKASKGFERQRLSKRIRDQ--ATTPDKAQRLEREISVLKSLDLHQTARAHLHLSLLKVKSIAASPDLPEELRR-GVSKPNLPPEEQ------ 109
                 56899******************999..9***************************************************.**********77...... PP

       BUD22 104 tkalenvtsrLlnsktvkevveeivesvkkllgiekkkkkkeeekkkkkkkkkkkkkkeeee.........eeesdkeeesedsedeekeeseddeeee 193
                  +al+nvts+L+n+++v+++ +++v++v++ll++   +++k ++k+k++ +++++++  +++         +         +++e      + ddee+e
  CCE30160.1 110 -AALHNVTSNLYNKDPVRQATDRAVKAVCSLLDVAIPENSKRSRKDKREVQEEQSSNGIKSSvptstlkenA---------SAAET---GGQFDDEESE 195
                 .********************************999555555555555555555555555555555443331.........33333...2333333333 PP

       BUD22 194 eededdedaee.............deedeeaeerelaqydglla.sddeded........................eyneetdeesseesdssdssesa 254
                 +e+ +++d++e             +++++e+ee++++++d+ll+  ++e+ed                        +++ee++ e+ + sd++++ e a
  CCE30160.1 196 FEGFSSHDEDEmanartekdeqegSDSASEDEEDNVEKLDDLLGnASEEEEDwndekyaqfrgkekvnlddisvsgSDDEESEAEAVSGSDEQSEAEPA 294
                 333333333333333444444456678889999999999997775666666689999999999999999988775544444444444445555555555 PP

       BUD22 255 sesesessek....kkkkkkkkkkkakakkvtsstfLPsLmgGYisGseddeasdaeesvapkRKNRrGQrARraIwEKKYGknAkHvkkekekekeer 349
                  +++s+s ++    ++k++kk+++++k   ++ stfLPsLmgGYisGse+  asd e  +a++ K+RrGQrAR+aIwE+KYG +AkH+ + + k     
  CCE30160.1 295 TQRTSPSLTPpietTTKTSKKSSSASKPGLISGSTFLPSLMGGYISGSES--ASDIE--EAKP-KKRRGQRARQAIWEQKYGTGAKHLLNPSRKG---- 384
                 55555555558874555555555555556667*****************8..88888..3333.9**********************99995555.... PP

       BUD22 350 kerqkeyeerdsGWdakrgakaeedk..sekksksk.............akkkkkkkkddkkakaaaekelHPSWeAkkkakekkkaakfqGKKIvFD 432
                          rdsGWd++rga+++ ++  s     +k             a+++k++k       +++e+ lHPSWeA+kka + +ka++f G+K+vFD
  CCE30160.1 385 --------GRDSGWDMRRGAVDGGERgkS--STPWKkgiqrpgaghmepAPAPKPRK-------RDDEGALHPSWEARKKARQTQKAVAFTGQKVVFD 465
                 ........9*****************531..33333578888655444444444444.......555666***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1194  (0.066596); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 2950.98
//
Query:       CCE30161.1  [L=539]
Description: uncharacterized protein CPUR_04009 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3877.20
//
Query:       CCE30162.1  [L=612]
Description: uncharacterized protein CPUR_04010 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0021   18.0   0.0     0.0042   17.0   0.0    1.5  1  DbpA           DbpA RNA binding domain


Domain annotation for each model (and alignments):
>> DbpA  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.3e-07    0.0042      40      71 ..      68      99 ..      66     100 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.3e-07
                S-EEEEE-TT-HHHHHHHHTT--SSS----EE CS
        DbpA 40 kfSfvevpkekaeevlkalkkkkikGrkvrve 71
                ++ +v++p+++ae++ k+l+++++kG k+r+e
  CCE30162.1 68 RYGYVDLPEADAEKLRKRLNGTTFKGVKMRIE 99
                688****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2302  (0.128395); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        83  (0.00462937); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.55u 0.36s 00:00:01.91 Elapsed: 00:00:00.52
# Mc/sec: 3536.62
//
Query:       CCE30163.1  [L=278]
Description: probable holocytochrome-c synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.2e-117  389.8   0.2     1e-116  389.6   0.2    1.0  1  Cyto_heme_lyase  Cytochrome c/c1 heme lyase


Domain annotation for each model (and alignments):
>> Cyto_heme_lyase  Cytochrome c/c1 heme lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  389.6   0.2  5.7e-121    1e-116      45     292 .]      10     260 ..       1     260 [. 0.96

  Alignments for each domain:
  == domain 1  score: 389.6 bits;  conditional E-value: 5.7e-121
  Cyto_heme_lyase  45 eaaakekkkesasacpvkeeeeseeeeeksalsklnplnympselsqerapeqkvdLpteReissiPkgdeeglWeYPspqqmynAmlrKGyed 138
                      + ++ +++++++s cpv++e++++ ++ ks +s+lnplnym+++lsq++ap+q+v+Lpt+Re+ssiP+g+++g+WeYPspqqmynA+lrKGy d
       CCE30163.1  10 KPKSDTNSSSTPSGCPVPHEARTAGDKPKSIMSQLNPLNYMFPDLSQKKAPNQTVALPTSREESSIPRGSGDGTWEYPSPQQMYNALLRKGYAD 103
                      4556677888999********************************************************************************* PP

  Cyto_heme_lyase 139 ipedavesmvavHnflnEgaWeeileWEkkfakglakgwkkckrgeekveeelekee.....ePkLlrFqGrpkelsPkarllqllgklfPskf 227
                      ++ +avesmv+vHnflnEgaW+e+++WE++f kgl+kgw++c+rge+++ eele+++     +P+L+rFqGrpk+l+Pka++lq+lg+++Pskf
       CCE30163.1 104 TDITAVESMVSVHNFLNEGAWAEVVGWEQRFGKGLYKGWQVCRRGEAHTPEELERNWdgdqpDPTLIRFQGRPKDLTPKATMLQVLGWIYPSKF 197
                      ****************************************************9999999999******************************** PP

  Cyto_heme_lyase 228 stelPFDRHDWlvlRkteeeekkevrYviDyYsgpdeetGepvfllDvRPaldsltaaadRlvrw 292
                      +te+PFDRHDW+v+R+ + e +++vrYviDyYsg++e+tGepvf+lDvRPa  +++ aa+R++rw
       CCE30163.1 198 GTEPPFDRHDWFVSRDVNGE-RQQVRYVIDYYSGEPEPTGEPVFYLDVRPAA-TPRGAAERIIRW 260
                      ****************8887.9*****************************9.9**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2028.40
//
Query:       CCE30164.1  [L=702]
Description: related to aminoglycoside acetyltransferase regulator from P. stuartii [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-22   80.1   0.0    1.5e-13   51.0   0.0    2.6  2  ABC1          ABC1 family
  ------ inclusion threshold ------
      0.023   14.3   0.0      0.074   12.6   0.0    1.7  2  RIO1          RIO1 family
      0.051   13.7   0.0       0.17   12.0   0.0    1.8  1  POTRA_TamA_1  POTRA domain TamA domain 1
      0.056   13.4   0.0       0.17   11.8   0.0    1.9  1  APH           Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.5e-09   6.8e-06       4      33 ..     233     262 ..     232     267 .. 0.92
   2 !   51.0   0.0   3.3e-17   1.5e-13      36     118 ..     305     387 ..     294     388 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.5e-09
        ABC1   4 gkkleeiFaefdeePiAaASiaqVhrAklk 33 
                 g+  e+iF+efd++P++++ iaqV++Aklk
  CCE30164.1 233 GRRFEDIFDEFDQKPLGVGAIAQVYKAKLK 262
                 67889***********************98 PP

  == domain 2  score: 51.0 bits;  conditional E-value: 3.3e-17
        ABC1  36 eeVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdefskslleEldferEAknaekfrenfaklkevkvPkv 118
                 + VavKv +p+v++++++Dl+++ ++a++l+ ++    l+l   v +f + ++ +ld++ EA+n e+fr+nf++ ++ ++P  
  CCE30164.1 305 SYVAVKVLHPKVERTVRRDLRIMGFFASVLHFIPTIEWLSLPDEVGQFGEMMKLQLDLRIEAANLETFRRNFKARSTASFPYP 387
                 68**************************99888777779************************************99999976 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.67     3e+03     152     175 ..     308     330 ..     308     334 .. 0.81
   2 ?   12.6   0.0   1.7e-05     0.074      60     139 ..     374     451 ..     357     458 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.67
                 EEETTSTTHHHHHHHHHHHHHHHH CS
        RIO1 152 aveldhpnalefLerDveniikfF 175
                 av++ hp+ +   +rD++  + fF
  CCE30164.1 308 AVKVLHPKVERTVRRDLRI-MGFF 330
                 68899***********974.4455 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHTT--S--EEEEETTEEEEE--EETTEEGGBHHHCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEE CS
        RIO1  60 rnLkrleeagvpvPkpielkrhvlvmefigedgvaapklkdveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlv 139
                 rn k+ ++a +p P      r+vl+ ef +  g++++   +      ++e+++e l++  +++   + vHaDL   N++v
  CCE30164.1 374 RNFKARSTASFPYPYTDFTTRNVLIEEFAQ--GIPLASFMENGGGVFQHEIADEGLDAFLRMLLLDNFVHADLHPGNIMV 451
                 56777777878888888899**********..*******99997668899********999*99*************998 PP

>> POTRA_TamA_1  POTRA domain TamA domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.7e-05      0.17       6      60 ..     282     336 ..     279     340 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.7e-05
  POTRA_TamA_1   6 GldgeleeNvrayLsliseeesesserlerllrraeeeirkALralGYYqptief 60 
                   Gl + +++ v++ L++ +++  +s   ++ l+ ++e+ +r+ Lr +G++ +  +f
    CCE30164.1 282 GLTKNVRRHVDVVLKSSPKRVPSSYVAVKVLHPKVERTVRRDLRIMGFFASVLHF 336
                   8999999999***********99999***********************987765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.8e-05      0.17     149     181 ..     424     452 ..     305     461 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC CS
         APH 149 eeqvlaalaallpgelptvllHgDlhpgNllvd 181
                 +e  l+a+++ l+      ++H DlhpgN++v+
  CCE30164.1 424 DE-GLDAFLRMLLL---DNFVHADLHPGNIMVR 452
                 33.56666666663...789***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4538.83
//
Query:       CCE30165.1  [L=652]
Description: uncharacterized protein CPUR_04013 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.001   18.2   1.3      0.039   13.0   0.1    3.2  3  TCO89     TORC1 subunit TCO89


Domain annotation for each model (and alignments):
>> TCO89  TORC1 subunit TCO89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -11.9  22.9         1   1.8e+04     129     417 ..      26     322 ..      22     359 .. 0.50
   2 !   13.0   0.1   2.1e-06     0.039     462     478 ..     439     455 ..     379     459 .. 0.92
   3 !   12.8   0.1   2.4e-06     0.044     500     529 ..     494     523 ..     488     555 .. 0.87

  Alignments for each domain:
  == domain 1  score: -11.9 bits;  conditional E-value: 1
       TCO89 129 eAqdddksnntqknspkqersfsedevvkdrlsvesdslrkls.epnsdkPlsrlrnrvdsdskltssravkPmdhdkidpsksrnkdfdksassdkik 226
                   +++d  nnt+  s +++   ++++    r   ++ s++    ++n + P+ +l  r+ s  + +     +P+       + + + + ++ ++s +i 
  CCE30165.1  26 SGSQSDGTNNTGGPSHQHRVKSHQKHHHVGRFNTRVPSTKAFHkHANAHGPPPKLTRRQTSGPASP-AEVERPPHR-----RATSEVKLQGQSTSANIP 118
                 556677777777777766666677777777777777777777656777778888888887777777.222233322.....333344556666666666 PP

       TCO89 227 aslndetlekedeisdddivhdnvkddvnediidavpknsslvkaeahslerq...eedsaslasvtkeknkveiaDennkalsiieeesekkreeqyv 322
                 +sl    l+++   + +    ++  d+++   ++   ++       +++++r+    +d+  +    ++ n+  i  +   + s       + + +q+v
  CCE30165.1 119 KSLSHTSLKRN-RSQAEVAKRTKSSDKLKRAPSGTGVHRH--TAKTSKTQVRFdlgSDDPDDEWIDASGSNSPYISRKSSINNSVQPSLRPTTEMSQPV 214
                 66665555554.1111112222222232222222222222..112223333321113444444444445555555544433333333333333336666 PP

       TCO89 323 pdmilsqstGverkf.enelsrqnslak..........lknaeredkkelknarlnelkfntinqqlnaklksdri..kskadfssaissltnn.Lqrg 407
                     lsq   ++++  e+e+ +q+ +++            ++ r+  + l+ ++ +e++ +   +q+ ++ + +     ska  s+    lt+  Lqr+
  CCE30165.1 215 APSALSQTQQLQQQKeEEEVVKQQPQTRpheepqtqlrHGQQGRQGLQGLQQQQQQEQQQQLSDEQQQQQQQHSPAsvASKAT-SQHKEYLTSRlLQRT 312
                 66666666666544303344444444434444444422233445555566666666666666555555553333331122222.223344666525777 PP

       TCO89 408 npesrlarsk 417
                  p+s +++  
  CCE30165.1 313 PPQSAPPKMT 322
                 7777776654 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.1e-06
       TCO89 462 dSRTQrKlllQResSil 478
                 +SRTQ+Kl lQR+sS+l
  CCE30165.1 439 KSRTQQKLNLQRASSVL 455
                 7**************97 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 2.4e-06
       TCO89 500 referisheYtnvrRfsnplaesLerisqs 529
                 r +er   eY  vrR++np+a sL+r+s+ 
  CCE30165.1 494 RLLERTGMEYLVVRRYQNPVARSLNRLSRL 523
                 788999*********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2613  (0.145742); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.21u 0.34s 00:00:01.55 Elapsed: 00:00:00.53
# Mc/sec: 3679.49
//
Query:       CCE30166.1  [L=598]
Description: related to DAL81-transcriptional activator for allantoin and GABA catabolic genes [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-21   74.1   0.2    2.9e-20   72.4   0.2    1.8  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.2   1.6e-24   2.9e-20       1     266 [.     118     362 ..     118     363 .. 0.87

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 1.6e-24
  Fungal_trans   1 ldrffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeili...hedfsspssslwil 94 
                   +d++f  +hp fpi++k+ fl+ +     ++ ++ sp  l+a++ l+ + ++      + ++ +++        + e li   ++d+   ++ l ++
    CCE30166.1 118 IDVYFRIVHPAFPIIQKHVFLERY----ERSHREFSPPILAAVYLLAINWWDHSPELAHLPRPNVR--------ELERLIrgtLADAMNRPK-LSTI 201
                   799*********************....9999999999*****************99999999988........333344445678888888.**** PP

  Fungal_trans  95 qsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlp......L 185
                   q+ lll+    + +     +      v + ++lgLh + s+++       +++e+  rrRl+wa ++ Dk+ al++Grp+++++s+  ++      +
    CCE30166.1 202 QAGLLLSQRPEGDQ-----WAPTAQLVAIGQELGLHLDCSNWK------IPPWEKGLRRRLAWALYIQDKWGALIHGRPSHIFASNWGVRalsandF 287
                   *******9999998.....888888999***************......99999**************************99****99996432222 PP

  Fungal_trans 186 PcddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlq....seklswveeleraldnWr 266
                   P   d +w+  da+e +++e       k+r+ +s +++L++ils+i+ ++++++++  + d      +++ls  + ++ +l++W+
    CCE30166.1 288 P---DVEWDEGDADEREDIE-------KGRLLFSRFVRLSEILSEILETFYTLRSTQAIADAGlqstQLVLSLAKPVQLKLKEWY 362
                   2...2256666666666666.......99*****************************999999999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4265.30
//
Query:       CCE30167.1  [L=827]
Description: uncharacterized protein CPUR_04015 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.015   15.5   0.3      0.029   14.6   0.3    1.4  1  ABC_tran_CTD  ABC transporter C-terminal domain
       0.26   11.7   0.6       0.69   10.3   0.6    1.6  1  DUF1270       Protein of unknown function (DUF1270)


Domain annotation for each model (and alignments):
>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.3   3.3e-06     0.029      20      67 ..     776     820 ..     771     821 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.3e-06
  ABC_tran_CTD  20 LEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelyerWeeL 67 
                   +Ee+++++++  +dp+     e ++  ++ l+++eae    + rW eL
    CCE30167.1 776 IEEQLKKIDESTSDPDAA---EHVQPRMTLLADIEAEMGMQENRWHEL 820
                   79*************954...88************************9 PP

>> DUF1270  Protein of unknown function (DUF1270)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.6   7.7e-05      0.69      18      39 ..      43      64 ..      38      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.7e-05
     DUF1270 18 laivlmPllyfttaWsiaGfas 39
                l +vl  +l f t W++ Gfa 
  CCE30167.1 43 LRLVLAAFLLFVTLWAVNGFAG 64
                678*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 6161.72
//
Query:       CCE30168.1  [L=589]
Description: uncharacterized protein CPUR_04016 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-05   22.6   0.0    9.9e-05   21.8   0.0    1.3  1  Spermine_synth  Spermine/spermidine synthase domain


Domain annotation for each model (and alignments):
>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   5.5e-09   9.9e-05      19     131 ..     346     453 ..     328     494 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 5.5e-09
                     T-EEEEESSTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHSHHHHTTCGGCTTEEEEESTCHHHHCTCSS....-EEEEEEECCSTTCSSCG CS
  Spermine_synth  19 pkevLiiGGgDGgvlrevvkhntvekitlvdiDqkvidfskkflpslaisafndarvklvlgdgfkflkayek....kfdvvivdsldpvgpaen 109
                       + L+iG g G +   +v h    + t+v+ D  v +f  k++   +++         vl+d++++ +++++    ++d+++ d     g ae 
      CCE30168.1 346 DAKALVIGLGVGTTPSALVAHG--INTTVVEYDPVVYEFATKYFDLKENN-------PPVLQDAVGYTAQLANiapaTYDYIVHDVFT--GGAEP 429
                     6789******************..899*****************877766.......44888999998888888888*********99..66666 PP

                     ..CSSHHHHHHHHHTEEEEEEEEE CS
  Spermine_synth 110 ..lFskeffdllkkvlkedGviil 131
                       lF+ eff++l   l + G +  
      CCE30168.1 430 vdLFTLEFFQSLHALLAPRGTVAI 453
                     67**************99997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4220.57
//
Query:       CCE30169.1  [L=267]
Description: uncharacterized protein CPUR_04017 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2072.46
//
Query:       CCE30170.1  [L=162]
Description: uncharacterized protein CPUR_04018 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1329.14
//
Query:       CCE30171.1  [L=354]
Description: related to l-arginine:lysine amidinotransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-09   37.6   0.0     0.0013   17.9   0.0    3.9  4  Amidinotransf  Amidinotransferase


Domain annotation for each model (and alignments):
>> Amidinotransf  Amidinotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   7.1e-08    0.0013      23      52 ..      54      83 ..      30      87 .. 0.80
   2 !    1.3   0.0    0.0079   1.4e+02     118     145 ..      98     125 ..      97     135 .. 0.92
   3 !    7.8   0.0   8.5e-05       1.5     185     247 ..     195     254 ..     189     283 .. 0.84
   4 !    5.1   0.0   0.00058        10     287     340 .]     299     353 ..     294     353 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 7.1e-08
                   S---HHHHHHHHHHHHHHHHTTT-EEEEHH CS
  Amidinotransf 23 deiilekaqkEHdafvqvLrekGveVlvle 52
                   +++i++kaq+E d+f+ vL+++Gv+V+ + 
     CCE30171.1 54 AAEIVSKAQAELDNFASVLQQHGVKVYRPN 83
                   6789**********************9875 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.0079
                    TTTTEEEEBSEEEE---SSGGGHHHHHH CS
  Amidinotransf 118 trdwfstigggvvlnpmaapnRrrErll 145
                    +rd  +t g++++  p+a+  Rr E++l
     CCE30171.1  98 PRDALMTVGNTLIESPFAWACRRDEVEL 125
                    8************************976 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 8.5e-05
                    TEEEEEESS.SS-HHHHHHHHHHHHHTTS-SEEEEEE--GGSSTS-GGGTEEEEETTEEEE-HH CS
  Amidinotransf 185 gvvaigvss.RtdeegieelakklfyktvafkviaieipkgraimHldtvftvvdddavvclps 247
                    g++++g +s  t+++gie+l ++   +     ++ + +  ++ ++Hldt++ ++ + ++++ p+
     CCE30171.1 195 GKTLVGQLShVTNMKGIEYLRSQVPDG----YSVEVLHTTDEHALHLDTTILPLRHGLAIYNPE 254
                    67778888889****************....556778**************9999988888776 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.00058
                    S-EEEETTEEEEETTGHHHHHHHHHT..T-EEEEE-HTTTGGGS--TTTT-EEEEE CS
  Amidinotransf 287 NvLelkpgvvvaydrntvtnekleea..gievievpiselerGgGgarCmsaplfr 340
                    N+L+l+++++   +  +v+++   ++  g+e i  p++     gG+++C++  l+r
     CCE30171.1 299 NTLSLDEKKI-FIEEQDVEFADWLKEefGMEPIMLPFQHVNCLGGSFHCATVDLVR 353
                    8899985555.6666667776666665899*********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2868.39
//
Query:       CCE30172.1  [L=1439]
Description: related to multidrug resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-50  169.0   0.0    3.9e-29  101.9   0.0    2.6  2  ABC_tran      ABC transporter
    1.3e-17   64.4   1.3    1.3e-17   64.4   1.3    4.0  3  ABC_membrane  ABC transporter transmembrane region
    4.6e-08   32.8   1.7       0.11   11.9   0.0    4.2  4  SMC_N         RecF/RecN/SMC N terminal domain
    9.1e-07   28.9   2.1      0.022   14.7   0.2    2.6  2  RsgA_GTPase   RsgA GTPase
    1.2e-06   28.5   2.5       0.11   12.2   0.0    3.4  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.4e-06   28.6   0.4      0.012   15.9   0.0    3.1  2  AAA_22        AAA domain
    2.4e-06   27.2   2.3      0.011   15.5   0.3    2.6  2  AAA_29        P-loop containing region of AAA domain
    5.5e-05   23.0   0.2       0.18   11.5   0.0    2.9  3  AAA_24        AAA domain
    0.00011   22.6   0.5       0.88    9.9   0.1    2.8  2  AAA_16        AAA ATPase domain
    0.00012   21.3   2.4       0.12   11.5   0.3    2.5  2  T2SSE         Type II/IV secretion system protein
    0.00015   21.8   0.1       0.83    9.8   0.0    2.7  2  MMR_HSR1      50S ribosome-binding GTPase
     0.0002   21.0   0.3        0.2   11.2   0.1    2.3  2  AAA_7         P-loop containing dynein motor region
    0.00054   20.1   0.0      0.068   13.3   0.0    2.7  2  AAA_33        AAA domain
    0.00065   20.2   2.2       0.11   13.0   0.2    2.3  2  AAA_23        AAA domain
      0.001   18.8   0.0        1.9    8.2   0.0    2.5  2  AAA_30        AAA domain
     0.0011   19.0   0.5          1    9.4   0.0    2.4  2  Dynamin_N     Dynamin family
     0.0011   18.3   0.7        0.6    9.4   0.1    2.3  2  FtsK_SpoIIIE  FtsK/SpoIIIE family
     0.0093   15.7   0.2        2.6    7.7   0.2    2.3  2  AAA_15        AAA ATPase domain
     0.0095   15.1   0.5        2.1    7.5   0.0    3.3  3  NB-ARC        NB-ARC domain
  ------ inclusion threshold ------
      0.012   15.8   1.5        1.7    8.7   0.1    2.4  2  DUF87         Helicase HerA, central domain
       0.03   14.3   0.5          9    6.3   0.1    3.5  3  AAA_5         AAA domain (dynein-related subfamily)
      0.038   13.6   0.2        8.3    5.9   0.0    2.6  2  AAA_25        AAA domain
      0.041   13.5   3.2       0.65    9.6   0.3    2.4  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.067   13.6   0.1         33    4.9   0.0    3.5  3  AAA           ATPase family associated with various cellular 
       0.11   12.4   1.1        7.3    6.5   0.1    2.5  2  NACHT         NACHT domain
       0.12   12.9   0.2        8.7    6.9   0.0    2.6  2  AAA_18        AAA domain
       0.13   12.2   0.6        7.7    6.5   0.1    2.4  2  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.17   12.3   0.1         11    6.4   0.0    2.6  2  RNA_helicase  RNA helicase
       0.36   10.3   1.5         14    5.1   0.1    2.5  2  Pox_A32       Poxvirus A32 protein
        1.2    9.0   4.8         15    5.5   0.4    2.7  2  NTPase_1      NTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   2.1e-20   1.3e-17       1     134 [.     640     773 ..     640     776 .. 0.80
   2 !  101.9   0.0   6.5e-32   3.9e-29       1     137 []    1217    1362 ..    1217    1362 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 2.1e-20
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTC...HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxx...xx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..........esdee...ie 86 
                 +kn++l++  g+++ ivG+ G+GKSt+l+ll+g+l +  G+i            +  ++  ++ pq p +  ++ vr+n          ++++    ++
  CCE30172.1 640 VKNLNLDITSGKTTMIVGPVGSGKSTFLRLLLGELPQVLGTI------------TTEHSTCAFAPQSPWISWGT-VRSNilgmspwdskWYKSVvdaCS 725
                 58****************************************............45577888899998888887.999999999844443333322344 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDE 134
                   ++ l+l++ ++t+ + ++s LSgGq+ rv+laral ++++l++lD+
  CCE30172.1 726 LGVDFLDLPDGDQTKTGPRGSRLSGGQQMRVSLARALYSRKSLIVLDD 773
                 44455555556667776677***************************8 PP

  == domain 2  score: 101.9 bits;  conditional E-value: 6.5e-32
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsk 91  
                  l++++l+++ ge++a+ G++G+GKS+Ll +++g+l+ ++G+i++dg++++++++ +lrk++ +lpqep++ + + vren        de+i k ls+
  CCE30172.1 1217 LNRIDLNIQSGERIALCGRTGSGKSSLLLTILGMLELEAGSITIDGQNISRIPRGELRKRLNTLPQEPFFLQAS-VRENadplqlSTDERIIKTLST 1312
                  6899***************************************************************9988888.*********9999********* PP

                  STTGGTTCBGESTTS....GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   92 lglkelkdtvvkssp....ssLSgGqkqrvalarallkkpkllllDEpta 137 
                  ++l e+ +++ + ++     +LS+Gq+q  +lara+++  +++++DE+t+
  CCE30172.1 1313 VRLWEILESRGGLDAplseDELSHGQRQLFCLARAIARPGNIVIVDEATS 1362
                  *****88888766666778*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   3.6      0.06        36      13     267 ..     282     536 ..     270     540 .. 0.62
   2 ?    0.7   0.3      0.54   3.3e+02       5      60 ..     907     963 ..     905     968 .. 0.72
   3 !   64.4   1.3   2.2e-20   1.3e-17      89     249 ..     969    1129 ..     966    1148 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.06
                   HHHHHHHHHHHHHHHHHHSS...TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHH CS
  ABC_membrane  13 vlsplfplvlgrildtlldk...gdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltn 106
                   +  ++ p++ +r+ld+  +    ++ ++     ++ +++l+ ++ + + + ++++ + +    +  l + ++ k lr++ +   +  + +l    + 
    CCE30172.1 282 GFTFAEPFLVKRVLDFTAEPegpNTRNF--GYGLIGAYALVHIGKAMSLTWYEHMTYRVITMFRGSLINIIYGKTLRLDARAVLDAEAITL---TSA 373
                   5566677777777777766522223333..4444445555555555555555555556666666677777777777777777776433333...334 PP

                   HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHH CS
  ABC_membrane 107 dvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyfl 203
                   d+++++ g+++ +      + + +++ +++ +lg  + +  ++++ l++ v + ia    +++    +a++k+ +v+  +l +++ ++  g  ++  
    CCE30172.1 374 DIDRISLGMQTMHDSYASVIELSLSLWLLSKLLGIAV-VPPTIFIALCLAVGIPIATAAGNAQVPWLEAIEKRLAVTSKTLGNMKAIRMTGLTDAIH 469
                   4444444444444444444444455555555555544.33334444555566667777788888889999***********************9999 PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT...SSTHHHHHHHHHHH CS
  ABC_membrane 204 ekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisg...elsvgdlvvflslf 267
                   + +   + ++ +a++   +++ l+ g++++ ++++ +l l   + l +++   +l+ g ++++lslf
    CCE30172.1 470 KFISSLRAQEIQASRLFRLLSVLQTGAANCTFTFAPVLGLGAFAILAKANdteTLTEGVAFAVLSLF 536
                   9999999999999999999999999999999888887775333333333234466666655555555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.54
                   HHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH.HHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   5 illailagvlsplfplvlgrildtlldkgdpet.ealnvysllllllglaqfilall 60 
                   +++ +l ++++ +   + + +l++ +d+++++    + +++ ++++l+++ ++ ++ 
    CCE30172.1 907 FCVYVLICAAYTFGLNFPSIWLQWWTDYNTNHPnGSIEYWLSVYFGLAALAIFGCMT 963
                   556667777777777777777888887777777556888888888888888877765 PP

  == domain 3  score: 64.4 bits;  conditional E-value: 2.2e-20
                    HHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   89 msffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassva 183 
                    + f  +++ G+ ++r+  d++ +++ l+++l   + ++l +v++ +++f+ + ++++ l +++ l+++v++++ +++++l+  + +a a+++s++
    CCE30172.1  969 TTFLTSTNIGSTTNRFGQDLQLIDSDLPQSLDKTILNFLGVVVSAVLVFTGSAYVAVSLPVCIALVFIVQKFYLRTSHQLRLLDIEAKAPLFSHL 1063
                    5677789**************************************************************************************** PP

                    HHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  184 eEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttl 249 
                    +E+l+g+ t++a+g+ ++++e+  + l+  +k ++    ++++l+ +++ll+  + ++   f+t +
    CCE30172.1 1064 IETLNGLITLRAYGWSSEYIERSYDVLDASQKPYYLLWCIQRWLNLVLDLLAGGIAVILVAFATMM 1129
                    *************************************************99877766665555544 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0044       2.6      24      41 ..     650     667 ..     640     678 .. 0.82
   2 ?    4.8   0.0     0.027        16     136     180 ..     747     787 ..     721     821 .. 0.86
   3 ?    4.5   0.0     0.035        21      27      46 ..    1230    1249 ..    1215    1270 .. 0.80
   4 !   11.9   0.0   0.00019      0.11     132     211 ..    1329    1404 ..    1282    1410 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0044
                 SSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnll 41 
                  + t+ivGp GSGKs +l
  CCE30172.1 650 GKTTMIVGPVGSGKSTFL 667
                 4689***********987 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.027
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkva 180
                  LSgG++  v+l    A   +++++l +lD++   LD +  + v 
  CCE30172.1 747 RLSGGQQMRVSL----ARALYSRKSLIVLDDVLTGLDRATEASVL 787
                 699999865555....56679999*************98776665 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.035
                  EEEEESTTSSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxx RF
       SMC_N   27 taivGpNGSGKsnlldAilF 46  
                   a+ G+ GSGKs+ll  il 
  CCE30172.1 1230 IALCGRTGSGKSSLLLTILG 1249
                  5899**********988854 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 0.00019
                  -STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  132 iskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211 
                  +s+++LS G+++L  la  +    ++p  ++++De  +  D +  + + ++++e+ k   +i ++++ +++ + d++v +
  CCE30172.1 1329 LSEDELSHGQRQLFCLARAI----ARPGNIVIVDEATSSVDLETDELMQRVIQEELKGRTLIAVAHKLHTVVDYDRIVLI 1404
                  67789********9887654....59******************************************999999998876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   3.7e-05     0.022      97     133 ..     647     684 ..     636     688 .. 0.83
   2 !   13.1   0.2   0.00011     0.067      90     131 ..    1217    1259 ..    1201    1264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.7e-05
                  CTT.SEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpelelktgevsek 133
                  +++ kt+++vG+ G GKSt++  ll+el +  g + ++
   CCE30172.1 647 ITSgKTTMIVGPVGSGKSTFLRLLLGELPQVLGTITTE 684
                  4444***********************99999988776 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00011
                   HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase   90 leelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131 
                   l+++  ++++ + ++l+G +G GKS+L+ ++l+ lel+ g++ 
   CCE30172.1 1217 LNRIDLNIQSgERIALCGRTGSGKSSLLLTILGMLELEAGSIT 1259
                   56666667766899*******************9999999886 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00019      0.11       2      19 ..     653     670 ..     652     684 .. 0.91
   2 !    9.6   0.1    0.0012      0.74       3      32 ..    1231    1260 ..    1230    1294 .. 0.67
   3 ?    4.7   0.0     0.038        23     228     283 ..    1325    1376 ..    1318    1395 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00019
      AAA_21   2 nvliGpNgsGKSnLLdal 19 
                 ++++Gp gsGKS++L++l
  CCE30172.1 653 TMIVGPVGSGKSTFLRLL 670
                 79**************99 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0012
      AAA_21    3 vliGpNgsGKSnLLdaldllarldrdvegl 32  
                  +l G+ gsGKS+LL ++ ++  l + ++  
  CCE30172.1 1231 ALCGRTGSGKSSLLLTILGMLELEAGSITI 1260
                  799**************9998652222222 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.038
      AAA_21  228 dgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellk 283 
                   + +l+ +elS G+++l++l+ a++r      ++++DE  ++ +   + +l++ + 
  CCE30172.1 1325 LDAPLSEDELSHGQRQLFCLARAIARPG---NIVIVDEATSSVDL-ETDELMQRVI 1376
                  578899999****************988...89*****8888888.4455554443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.1e-05     0.012       6      61 ..     651     707 ..     647     790 .. 0.69
   2 !    9.3   0.2    0.0021       1.3       8      33 ..    1230    1255 ..    1224    1380 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.1e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrell 61 
                 + ++++G++G+GK+t lr ll +l+++    + + ++  + ++s+  s+ ++++++l
  CCE30172.1 651 KTTMIVGPVGSGKSTFLRLLLGELPQVLGTITTEHSTCAFAPQSPWiSWGTVRSNIL 707
                 6689********************998777664444444444444456666666665 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0021
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeea 33  
                  ++++G +G+GK+ ll ++l  l+ ea
  CCE30172.1 1230 IALCGRTGSGKSSLLLTILGMLELEA 1255
                  79*************99998886554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   1.8e-05     0.011      17      39 ..     645     667 ..     639     673 .. 0.82
   2 !   10.7   0.1   0.00056      0.34      18      39 ..    1223    1244 ..    1216    1251 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.8e-05
      AAA_29  17 ieidlkg.atlltGpsGsGKSTll 39 
                 ++i+ +g +t+++Gp GsGKST+l
  CCE30172.1 645 LDIT-SGkTTMIVGPVGSGKSTFL 667
                 5666.4559*************97 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00056
      AAA_29   18 eidlkgatlltGpsGsGKSTll 39  
                  +i+  + + l G++GsGKS+ll
  CCE30172.1 1223 NIQSGERIALCGRTGSGKSSLL 1244
                  555444899***********98 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0035       2.1       3      35 ..     651     687 ..     649     721 .. 0.77
   2 !   11.5   0.0    0.0003      0.18       3      48 ..    1228    1282 ..    1226    1374 .. 0.66
   3 ?   -0.3   0.0       1.2   7.4e+02     123     186 ..    1352    1421 ..    1343    1427 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0035
      AAA_24   3 lkiliyGpsgiGKTtlakel...gpkpl.fidtekGl 35 
                 +  +i+Gp g+GK+t+++ l    p++l  i te+++
  CCE30172.1 651 KTTMIVGPVGSGKSTFLRLLlgeLPQVLgTITTEHST 687
                 6789*************99986644444245666655 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0003
      AAA_24    3 lkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie............s 48  
                   +i++ G  g+GK++l++++     ++ +e+G+  +d+ ++ +i+            +
  CCE30172.1 1228 ERIALCGRTGSGKSSLLLTI---LGMLELEAGSITIDGQNISRIPrgelrkrlntlpQ 1282
                  689*****************...99*****************9975544444443331 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.2
      AAA_24  123 knvifiahektrkdedpegeakytrlepklgkktanelkeevDlvlranlkred.........kvgervlkts 186 
                  +n++++ +++   d ++++  +   ++ +l+ +t  ++ +++++v++ +  r +         +++ rvl  +
  CCE30172.1 1352 GNIVIVDEATSSVDLETDEL-MQRVIQEELKGRTLIAVAHKLHTVVDYD--RIVlidkgkiieCGNPRVLLQN 1421
                  47777766666666666555.777888899999999*******999954..4444566666666666666555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0016      0.93      24      51 ..     650     677 ..     639     785 .. 0.81
   2 !    9.9   0.1    0.0015      0.88      22     107 ..    1225    1328 ..    1215    1386 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0016
      AAA_16  24 pelvllsGesGvGKsslvrellralekd 51 
                 +  ++++G+ G+GKs+ +r ll +l + 
  CCE30172.1 650 GKTTMIVGPVGSGKSTFLRLLLGELPQV 677
                 36799****************9877765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0015
      AAA_16   22 grpelvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysalaqalareellrqllde...........aesaeleawrekleeala 106 
                  +++e + l G  G+GKssl+ ++l  le + g i++ g++ +         + +   r + l+ l +e           a       ++ +l    +
  CCE30172.1 1225 QSGERIALCGRTGSGKSSLLLTILGMLELEaGSITIDGQNISR--------IPRGELR-KRLNTLPQEpfflqasvrenA-------DPLQL----S 1301
                  455789999***************8777773577788887777........4444433.555555555444322222211.......11111....1 PP

      AAA_16  107 ..........................a 107 
                                            +
  CCE30172.1 1302 tderiiktlstvrlweilesrggldaP 1328
                  222344444467777666654443332 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.3   0.00019      0.12     115     156 ..     636     677 ..     601     687 .. 0.79
   2 !    8.9   0.1    0.0012      0.69     116     156 ..    1214    1254 ..    1197    1262 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
       T2SSE 115 kekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156
                  + i + l+  +++ ++ ++ G+ gsGK+t+l  ll e+++ 
  CCE30172.1 636 GAMIVKNLNLDITSGKTTMIVGPVGSGKSTFLRLLLGELPQV 677
                 5666777888899999999*******************9986 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0012
       T2SSE  116 ekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156 
                  + + + +   +++   i + G TgsGK+ ll ++l +++ +
  CCE30172.1 1214 NSVLNRIDLNIQSGERIALCGRTGSGKSSLLLTILGMLELE 1254
                  5666777788999999*******************998766 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0014      0.83       3      26 ..     654     677 ..     652     698 .. 0.83
   2 !    9.2   0.1    0.0021       1.2       1      22 [.    1229    1250 ..    1229    1268 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0014
                 EEEESTTSSHHHHHHHHHTSTEEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaiv 26 
                 +ivG   +GKSt+++ l+ge  +v
  CCE30172.1 654 MIVGPVGSGKSTFLRLLLGELPQV 677
                 89****************985443 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0021
                  EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1    1 evaivGrpNvGKStLinaltge 22  
                  ++a+ Gr+ +GKS+L+ +++g 
  CCE30172.1 1229 RIALCGRTGSGKSSLLLTILGM 1250
                  699*************999884 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00033       0.2      28      60 ..     645     676 ..     639     693 .. 0.82
   2 !    7.4   0.0    0.0047       2.8      26      58 ..    1220    1252 ..    1215    1264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00033
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkkldke 60 
                 l ++++k +++vGp+G+GK++ ++ ll +l+ +
  CCE30172.1 645 LDITSGKTTMIVGPVGSGKSTFLRLLLGELP-Q 676
                 557899******************9999998.4 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0047
       AAA_7   26 lelllknkkpvllvGptGtGKtviikdllkkld 58  
                  ++l ++++  + l+G tG+GK++++ ++l  l+
  CCE30172.1 1220 IDLNIQSGERIALCGRTGSGKSSLLLTILGMLE 1252
                  57789999****************999887776 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00011     0.068       3      27 ..     654     678 ..     653     723 .. 0.83
   2 ?    3.9   0.0     0.091        55       3      39 ..    1231    1271 ..    1230    1377 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00011
      AAA_33   3 llvGlpGsGKstlaerllkklgavl 27 
                 ++vG+ GsGKst+++ ll +l+ vl
  CCE30172.1 654 MIVGPVGSGKSTFLRLLLGELPQVL 678
                 89*****************999554 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.091
      AAA_33    3 llvGlpGsGKstlaerllkklg....avllssdtlrrrlfg 39  
                   l+G  GsGKs l+  +l  l      ++++  +++r  +g
  CCE30172.1 1231 ALCGRTGSGKSSLLLTILGMLEleagSITIDGQNISRIPRG 1271
                  68**********99888766665555566666664444444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   0.00019      0.11      11      38 ..     641     669 ..     636     672 .. 0.83
   2 ?    6.5   0.1     0.017        10      23      36 ..    1231    1244 ..    1217    1264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00019
      AAA_23  11 rdqeidF.skgltlItGpNGaGKTTildA 38 
                 ++ ++d  s + t I+Gp G+GK+T+l+ 
  CCE30172.1 641 KNLNLDItSGKTTMIVGPVGSGKSTFLRL 669
                 667777767799**************975 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.017
      AAA_23   23 lItGpNGaGKTTil 36  
                  +++G +G+GK+++l
  CCE30172.1 1231 ALCGRTGSGKSSLL 1244
                  79***********9 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0043       2.6      15      38 ..     648     670 ..     643     694 .. 0.81
   2 !    8.2   0.0    0.0031       1.9      21     115 ..    1230    1378 ..    1220    1388 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0043
      AAA_30  15 tsgdrvavltGpAGtGKttalkal 38 
                 tsg+ +++++Gp G+GK+t l+ l
  CCE30172.1 648 TSGK-TTMIVGPVGSGKSTFLRLL 670
                 5664.99**************987 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0031
      AAA_30   21 avltGpAGtGKttalkalreaweaa.g..........................grviglAptgkaAkvLaeelg...ieastiakllkrlk...... 81  
                   +l G+ G+GK+ +l ++  ++e + g                          ++ ++ A+  + A+ L+ +++   i++ ++ +l++ l+      
  CCE30172.1 1230 IALCGRTGSGKSSLLLTILGMLELEaGsitidgqnisriprgelrkrlntlpqEPFFLQASVRENADPLQLSTDeriIKTLSTVRLWEILEsrggld 1326
                  4678999999999999999999998669999977777777777777777777777777777777777777555533345555445554444889999 PP

      AAA_30   82 ..................grarlepgtllivDEagmvdtkqlaallkaaeka 115 
                                    +ra  +pg+++ivDEa      ++++l++++ ++
  CCE30172.1 1327 aplsedelshgqrqlfclARAIARPGNIVIVDEATSSVDLETDELMQRVIQE 1378
                  999999999999*****976778889********988888888888877654 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0017         1       2      22 ..     654     674 ..     653     693 .. 0.80
   2 !    7.6   0.1     0.006       3.6       1      20 [.    1230    1249 ..    1230    1263 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0017
                 EEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlged 22 
                 ++vG + sGKS++l  Llge 
  CCE30172.1 654 MIVGPVGSGKSTFLRLLLGEL 674
                 58*****************96 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.006
                  EEEEEBTTTTHHHHHHHHHT CS
   Dynamin_N    1 iavvGsqSsGKSSvlnaLlg 20  
                  ia++G + sGKSS+l  +lg
  CCE30172.1 1230 IALCGRTGSGKSSLLLTILG 1249
                  89*************99998 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1     0.001       0.6      33      60 ..     645     671 ..     634     674 .. 0.81
   2 !    7.0   0.0    0.0056       3.4      41      60 ..    1229    1248 ..    1202    1252 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.001
                   EEGGGS-.SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  33 ldlkkmashllvaGatgsGKStalntLi 60 
                   ld+ +    ++++G  gsGKSt+l+ L+
    CCE30172.1 645 LDITSGK-TTMIVGPVGSGKSTFLRLLL 671
                   5666666.79**************9886 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0056
                    SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE   41 hllvaGatgsGKStalntLi 60  
                     + ++G+tgsGKS  l t++
    CCE30172.1 1229 RIALCGRTGSGKSSLLLTIL 1248
                    6889**********998875 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.2    0.0043       2.6      16      43 ..     642     670 ..     640     671 .. 0.81
   2 ?    5.6   0.0     0.018        11      24      50 ..    1227    1254 ..    1217    1347 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0043
      AAA_15  16 dveidlsee.ltvliGkNnsGKSsileal 43 
                 +  +d+ +  +t ++G+ +sGKS++l++l
  CCE30172.1 642 NLNLDITSGkTTMIVGPVGSGKSTFLRLL 670
                 555666665699**************998 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.018
      AAA_15   24 e.ltvliGkNnsGKSsilealdlFlnnk 50  
                       l+G+ +sGKSs+l  +  +l+ +
  CCE30172.1 1227 GeRIALCGRTGSGKSSLLLTILGMLELE 1254
                  35679*************9998888765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.38   2.3e+02      24      44 ..     654     674 ..     639     683 .. 0.79
   2 !    7.5   0.0    0.0035       2.1      92     115 ..     754     777 ..     734     840 .. 0.89
   3 ?    2.6   0.0      0.11        66      21      41 ..    1228    1248 ..    1210    1255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.38
                 EEEESTTSSHHHHHHHHCCSH CS
      NB-ARC  24 alvGmgGvGKttlakqilnks 44 
                  +vG  G+GK+t ++  l ++
  CCE30172.1 654 MIVGPVGSGKSTFLRLLLGEL 674
                 69**********988666655 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0035
                 HHHHHHHHCCCTTEEEEEEEE-SH CS
      NB-ARC  92 lkrklvrlLltkrfllvlDDVwee 115
                 +   l r+L ++++l+vlDDV + 
  CCE30172.1 754 MRVSLARALYSRKSLIVLDDVLTG 777
                 677899***************875 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.11
                  EEEEEEESTTSSHHHHHHHHC CS
      NB-ARC   21 lvvalvGmgGvGKttlakqil 41  
                    +al G+ G+GK+ l+  il
  CCE30172.1 1228 ERIALCGRTGSGKSSLLLTIL 1248
                  4689***********987775 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.023        14      28      47 ..     655     674 ..     642     681 .. 0.87
   2 ?    8.7   0.1    0.0028       1.7      16      44 ..    1220    1248 ..    1210    1260 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.023
       DUF87  28 ilgsTGsGKSntvavLleel 47 
                 i+g  GsGKS++ ++Ll el
  CCE30172.1 655 IVGPVGSGKSTFLRLLLGEL 674
                 88999************987 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0028
       DUF87   16 ldlnklvtrHlAilgsTGsGKSntvavLl 44  
                  +dln    +++A  g+TGsGKS +   +l
  CCE30172.1 1220 IDLNIQSGERIALCGRTGSGKSSLLLTIL 1248
                  6666666789************9987776 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.015         9       3      30 ..     654     681 ..     652     688 .. 0.81
   2 ?    3.0   0.0      0.16        96       3      24 ..    1231    1252 ..    1229    1290 .. 0.83
   3 ?    0.2   0.0       1.2   6.9e+02      80     113 ..    1387    1421 ..    1375    1436 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.015
                 EEE--SSSSHHHHHHHGGGGBS--EEEE CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyv 30 
                 ++vGp G+gKs++ + l+  l + + ++
  CCE30172.1 654 MIVGPVGSGKSTFLRLLLGELPQVLGTI 681
                 79**************998887766555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.16
                  EEE--SSSSHHHHHHHGGGGBS CS
       AAA_5    3 lLvGppGtgKselaerlaaaln 24  
                   L G +G+gKs+l   ++ +l+
  CCE30172.1 1231 ALCGRTGSGKSSLLLTILGMLE 1252
                  599***********99999883 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.2
                  HHHHHHHHHHHSSEEE..-SSSEEE---....... CS
       AAA_5   80 evlnsLlslleerrllleeggelvkakndd.ller 113 
                  +v+ +L+++ + +r+ l + g+ + + n+  ll++
  CCE30172.1 1387 AVAHKLHTVVDYDRIVLIDKGKIIECGNPRvLLQN 1421
                  68999********************9998877665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.037        22      31      50 ..     648     667 ..     639     674 .. 0.87
   2 ?    5.9   0.0     0.014       8.3      30      52 ..    1224    1246 ..    1216    1249 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.037
      AAA_25  31 pagelallaGapgtGKttla 50 
                   g++++++G+ g+GK+t++
  CCE30172.1 648 TSGKTTMIVGPVGSGKSTFL 667
                 56899*************97 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.014
      AAA_25   30 lpagelallaGapgtGKttlald 52  
                  +  ge ++l+G++g+GK+ l+l 
  CCE30172.1 1224 IQSGERIALCGRTGSGKSSLLLT 1246
                  567999**************986 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3    0.0011      0.65       2      21 ..     652     671 ..     651     686 .. 0.86
   2 ?    3.9   0.2     0.058        35       4      21 ..    1231    1248 ..    1229    1265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
                 EEEEEESTTCCHHHHHHHHH CS
        cobW   2 vtvltGflGsGKTtLlnhll 21 
                 +t+++G++GsGK+t+l+ ll
  CCE30172.1 652 TTMIVGPVGSGKSTFLRLLL 671
                 689*************9888 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.058
                  EEEESTTCCHHHHHHHHH CS
        cobW    4 vltGflGsGKTtLlnhll 21  
                   l+G  GsGK++Ll ++l
  CCE30172.1 1231 ALCGRTGSGKSSLLLTIL 1248
                  68999**********998 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       7.5   4.5e+03      94     114 ..     588     607 ..     565     612 .. 0.74
   2 ?    4.1   0.0     0.095        57       2      22 ..     654     674 ..     653     696 .. 0.84
   3 ?    4.9   0.0     0.055        33       2      74 ..    1231    1367 ..    1230    1395 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 7.5
                 HHTTTSSSTEEEEEEESSGGG CS
         AAA  94 dgvkkkeskvivigatnrpdk 114
                 d  ++ ++k++ i+atnr ++
  CCE30172.1 588 DSRDT-RQKLVSITATNRAEE 607
                 44444.5679*******9765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.095
                 EEESSTTSSHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel 22 
                 +++Gp G GK+++ + +  el
  CCE30172.1 654 MIVGPVGSGKSTFLRLLLGEL 674
                 689*************99997 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.055
                  EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS................................................... CS
         AAA    2 llyGppGtGKTllakavakel..........gvefleisgsellsk................................................... 37  
                   l+G  G GK++l   +   l          g+++ +i   el++                                                    
  CCE30172.1 1231 ALCGRTGSGKSSLLLTILGMLeleagsitidGQNISRIPRGELRKRlntlpqepfflqasvrenadplqlstderiiktlstvrlweilesrgglda 1327
                  5899999999999999999984433333333344555555555533666666666666666666666777777777777777777777777777777 PP

                  ..STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHH CS
         AAA   38 ..yvgesekkirelfkeakekakp.silfiDEidalaksr 74  
                       e ++  r+lf  a++ a+p  i+++DE+ + +  +
  CCE30172.1 1328 plSEDELSHGQRQLFCLARAIARPgNIVIVDEATSSVDLE 1367
                  7777777777777887777777677788888877666555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.012       7.3       2      21 ..     652     671 ..     651     677 .. 0.85
   2 ?    4.1   0.1     0.066        39       3      21 ..    1230    1248 ..    1228    1256 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.012
                 CEEEEC-TTTCHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkla 21 
                 + ++ G+ GsGK+t+l+ l 
  CCE30172.1 652 TTMIVGPVGSGKSTFLRLLL 671
                 6799************9776 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.066
                  EEEEC-TTTCHHHHHHHHH CS
       NACHT    3 vilqGeaGsGKTtLlqkla 21  
                  ++l G+ GsGK+ Ll  + 
  CCE30172.1 1230 IALCGRTGSGKSSLLLTIL 1248
                  7899**********98875 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.015       8.7       2      18 ..     654     670 ..     654     695 .. 0.84
   2 ?    3.1   0.0      0.22   1.3e+02       1      15 [.    1230    1244 ..    1230    1285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.015
      AAA_18   2 lltGtpGvGKttlakeL 18 
                 ++ G+ G+GK+t+ + L
  CCE30172.1 654 MIVGPVGSGKSTFLRLL 670
                 589***********999 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.22
      AAA_18    1 IlltGtpGvGKttla 15  
                  I+l+G  G+GK++l 
  CCE30172.1 1230 IALCGRTGSGKSSLL 1244
                  89**********986 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.013       7.7      18      43 ..     647     674 ..     634     683 .. 0.77
   2 ?    3.3   0.0      0.13        77      18      45 ..    1224    1253 ..    1204    1260 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.013
                 H..TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrglakal 43 
                 +  g++ ++ G++G+GK+t+ r l+ +l
  CCE30172.1 647 ItsGKTTMIVGPVGSGKSTFLRLLLGEL 674
                 144778999*************998765 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.13
                  H..TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE   18 l..gdvilLeGdLGaGKTtlvrglakalgv 45  
                  +  g+ i+L G  G+GK+ l   ++  l++
  CCE30172.1 1224 IqsGERIALCGRTGSGKSSLLLTILGMLEL 1253
                  144667**************9988877766 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.019        11       2      31 ..     654     683 ..     653     705 .. 0.76
   2 ?    3.1   0.0      0.21   1.3e+02       1      19 [.    1230    1248 ..    1230    1266 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.019
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkk 31 
                   +++Gp g GKSt+ + L  +l + l+++++
    CCE30172.1 654 MIVGPVGSGKSTFLRLLLGELPQVLGTITT 683
                   689*************99998877754443 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.21
  RNA_helicase    1 iwlyGpsgeGKStlakeLa 19  
                    i l+G++g GKS+l  ++ 
    CCE30172.1 1230 IALCGRTGSGKSSLLLTIL 1248
                    579*********9987754 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.071        43      17      37 ..     654     674 ..     648     679 .. 0.88
   2 ?    5.1   0.1     0.023        14      15      35 ..    1229    1249 ..    1217    1254 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.071
     Pox_A32  17 alvGgsGsGktvyLlsLlrtl 37 
                  +vG  GsGk ++L+ Ll +l
  CCE30172.1 654 MIVGPVGSGKSTFLRLLLGEL 674
                 689***********9998765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.023
     Pox_A32   15 rlalvGgsGsGktvyLlsLlr 35  
                  r+al G +GsGk   Ll +l 
  CCE30172.1 1229 RIALCGRTGSGKSSLLLTILG 1249
                  99**************99875 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.4     0.025        15       3      38 ..     654     685 ..     652     688 .. 0.84
   2 ?    4.9   0.0     0.036        22       1      33 [.    1229    1263 ..    1229    1278 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.025
                 EEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellkssgvkvgGfyteev 38 
                 +i Gp G+GK+T+++ +l +l     +v G +t e+
  CCE30172.1 654 MIVGPVGSGKSTFLRLLLGEL----PQVLGTITTEH 685
                 689*************99999....56777777775 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.036
                  EEEEE--TTSSHHHHHHHHHHHH.....GGGEEEE CS
    NTPase_1    1 kvfiTGppGvGKtTlvkkvlellkss..gvkvgGf 33  
                  ++++ G+ G+GK+ l+  +l +l+ +   ++++G 
  CCE30172.1 1229 RIALCGRTGSGKSSLLLTILGMLELEagSITIDGQ 1263
                  5899****************998654224556665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.46
# Mc/sec: 9455.04
//
Query:       CCE30173.1  [L=508]
Description: related to benzoate 4-monooxygenase cytochrome P450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-49  167.6   0.0    7.9e-49  166.6   0.0    1.4  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.6   0.0   4.4e-53   7.9e-49       8     447 ..      45     478 ..      34     489 .. 0.75

  Alignments for each domain:
  == domain 1  score: 166.6 bits;  conditional E-value: 4.4e-53
                 HCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEE.SSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHH CS
        p450   8 plvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgr.pdeallatsrkpfkgkgvlfangekwkklRrfltpt 105
                 ++v    +l+    + +++ + +++yg+++ + +g+ ++  +s   + ke+++ +g +++g+ +d+++++  r  f++ gv        k++R++l +t
  CCE30173.1  45 WIVYQDMWLR----RSKKIGEWHHTYGDVVLIAPGEISFSSVS---LTKEIYGSTGRHPKGHyFDNFMFYGERPLFCTLGV--------KEHRQVLKRT 128
                 4455555555....44556669****************99999...99*******98888861355555554444444444........5555555555 PP

                 HTSH.....STT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH....HHHHHHHHHHHHHHHHCHHHHCCCC CS
        p450 106 ltsf.....gkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledek....lselvkaveelssllskssvqllll 194
                 + +      ++l +l ++++ ++ +lv++++k+ + + ++d+  + + + +d i+ +++g ++   + e+    + ++++  +e+ ++ ++ s++  l+
  CCE30173.1 129 FAFYqptaiYQLsTLQPIWNNVG-KLVDRIKKEIEGHPTVDVLLYCNFYSFDNITGLVYGPHLCARTIEEseceERKILEGWKEV-EVWNNLSYNCPLV 225
                 55444555566868888888775.79**********99**********************9977444333223222333333333.3444444444444 PP

                 CHHHT..CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 195 fpllk..ylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLak 291
                  ++++   +  k    + +a ++l d  +++i   r + ++      ++l  l +a k+ +ge  ls   +a ++l+ l a++ T + +l+++L +La+
  CCE30173.1 226 HRMIRaaLCYAKSDPAFLSAEERLTDWNMEKIMCARTNPEKM--VAGSLLYQLSNA-KTPDGE-PLSIPWIASEILDNLHAAQSTVALALTYTLWNLAR 320
                 443320023333334444444444444444444444444444..344444444444.466666.*********************************** PP

                 SHHHHHHHHHHHHHHC.CTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB CS
        p450 292 nPevqeklreEidevl.gdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFl 389
                 +P+ q+++reE++    + + +p++  + + p lda+i+E+ R  p++  + +R+v+ +   ++ ++p+Gt+v+++++++h++ +vf+++++++peR+l
  CCE30173.1 321 HPKWQDRVREELHALPrKADGSPEFPGILHAPILDACIRESSRCNPLSSGRAERVVPVEKPYSNIVLPAGTIVSTSTWSMHHRTDVFEDAHSYKPERWL 419
                 ***********9988855555****************************************************************************** PP

                 -TTS.CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEE CS
        p450 390 dekg.nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppil 447
                 ++++   +  +  ++PFG G+R C+G+ +A  e+kl+la ++ +Fe+   p ++ + ++
  CCE30173.1 420 NADEeTLRAMESCYMPFGYGARLCLGKAFALAEIKLLLAGVVLEFEFWNGPLSTTEWNM 478
                 **99633456778*********************************9766666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3935.11
//
Query:       CCE30174.1  [L=2103]
Description: related to AM-toxin synthetase (AMT) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.8e-136  453.4   0.0    3.4e-69  233.5   0.0    2.2  2  AMP-binding    AMP-binding enzyme
    7.5e-75  252.3   0.0    7.3e-44  150.2   0.0    2.6  2  Condensation   Condensation domain
    1.1e-24   86.6   0.8    1.2e-11   44.7   0.2    2.9  2  PP-binding     Phosphopantetheine attachment site
    5.5e-07   30.5   0.0      0.016   16.2   0.0    3.2  3  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
       0.03   14.3   1.7       0.29   11.1   0.3    3.1  3  DotD           DotD protein
       0.19   10.3   0.0       0.36    9.4   0.0    1.4  1  Transferase    Transferase family


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.5   0.0   1.1e-72   3.4e-69       3     422 ..      57     457 ..      55     458 .. 0.88
   2 !  217.9   0.0     6e-68   1.8e-64       4     422 ..    1153    1547 ..    1150    1548 .. 0.85

  Alignments for each domain:
  == domain 1  score: 233.5 bits;  conditional E-value: 1.1e-72
                  HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEE CS
  AMP-binding   3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvlia 100
                  ++++ +pd+ a+     +  ++Yr++de +++lA+ L ++Gv  +  V ++ ++s    +a+l+++kaG++ v l p+l++++l+ i++++++ +++ 
   CCE30174.1  57 KRVQVQPDAQAICA--WDGDWSYRQVDELSTNLAHRLVCMGVDIDVLVSLCFQKSKWTPIAMLGVMKAGGASVALEPSLPRDRLQRIVDQAKPNLML- 151
                  68899*******77..7889*****************************************************************************. PP

                  TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSC CS
  AMP-binding 101 tvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfk 198
                   ++s       + a++l ++++++v+d d +         ++ + +     + + ++p++ +y+++TSG+TG+PKG + +h n++++++ +  +t  +
   CCE30174.1 152 -CSSLT----VDLAGQL-TTQSILVVD-DLIV--------QPVSIS-----RLPIVQPWNKLYVVFTSGSTGTPKGTITTHSNFCSAIHHH--QTNLG 227
                  .76554....2334433.445667777.2222........211211.....233689******************************9997..44577 PP

                  CTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT.-SEEEEESS-E CS
  AMP-binding 199 lkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlss.lrlvllggepl 295
                  l+++++v+ ++ +++++++ ++ + ++++G++++++++++a   + l++ i+ +++++++ +P+v  ++  s          +l + l++v+++ge+l
   CCE30174.1 228 LSSSSRVYDFARYSFDMAW-SNFIHTMAAGGCLCIPSQSEA--INNLAGSIRSFSANFLNITPSVGSMVRPS----------ELDGiLKHVVFAGEAL 312
                  889****************.9****************9999..44599*******************99665..........67788*********** PP

                  BHHHHHHHHHHHTCEEEEEEEEGGGSSECEE.....CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHH CS
  AMP-binding 296 spellrffralfgeevlegYGlTEttgvvtv.....lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataea 388
                    +l+ ++ ++   +vl++YG++E+t+ +t      ++ +++++   s+G+ l ++ + +    + ++ p ge+Gel++ gp v  gYl+++e+tae 
   CCE30174.1 313 TNHLAAKWAQHA--RVLNLYGPAECTVGATLhvielDEASRNNAANTSIGRGLGCCTWIVSSSCHHKLAPVGEVGELVLEGPIVGAGYLGDEEKTAEL 408
                  ***********6..49*************7778898555556667789*************9999********************************* PP

                  EEE...............TCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 389 fds...............egrwlrTGDlgrldedGyleivgRkkdlikl 422
                  f++               +gr++rTGDl+r+++dG+l +vgRk+ ++k+
   CCE30174.1 409 FIEdpqwlvegppggvgrHGRLYRTGDLVRYEADGRLSYVGRKDSQVKI 457
                  **8899*********985488**************************98 PP

  == domain 2  score: 217.9 bits;  conditional E-value: 6e-68
                   HHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding    4 qaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99  
                   + +++p++ a+     +  +TY+eld+ ++ lA  L   Gv++g +V ++ ++s  + va++a++kaG++   l+ + ++++l+ i+++  a+ l 
   CCE30174.1 1153 TTRQQPEAQAVCA--WDGNWTYAELDKLSSHLAYSLVDSGVGPGVVVPLCIEKSRWMPVAMMAVMKAGGASLALDYAQPEDRLRSIVDQELARRLS 1246
                   5689999999966..7789******************77***************************************************999999 PP

                   ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHH CS
  AMP-binding  100 atvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslklet 195 
                               ++ +      +v+v+++  +l +++++ + +++     p + +e++p+ ++y+++TSG+TG+PKGV+++h+n+++++  +  + 
   CCE30174.1 1247 ------------PHSS-----VVVVVVSE-HCLGSRPAEPRVGKA-----P-TLPEVDPSRTLYLVFTSGSTGRPKGVVVTHENVASAILHQ--RG 1316
                   ............2222.....23344443.333344444444333.....3.56689******************************98885..34 PP

                   CSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCH.HHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEE CS
  AMP-binding  196 rfklkeddvvlsilplahifglilelllallsGatvvllpkdaald.pklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvll 290 
                   +  +++d++++ ++++ +++ + ++ll  l++Ga+++++++d++++ p   +++ ++l+++++ ++P+ ++      +lk       l+ lr vl+
   CCE30174.1 1317 TLAFTKDSRIYDFASYMFDVVW-CNLLQGLSAGACICIPSNDDRRNdP---WGAAARLGANTTILTPSTVRGH----DLK------PLQCLRNVLF 1398
                   466789****************.*****************99995524...6*****************9976....233......5778****** PP

                   ESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE......CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT CS
  AMP-binding  291 ggeplspellrffralfgeevlegYGlTEttgvvtv......lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlk 380 
                    gepls + l  +++ ++  v ++YG+TE+t++ t       +p +  +k++g +G+    + + +   ++ ++vp g +Ge+l+ gp v+ gYl 
   CCE30174.1 1399 IGEPLSTDDLSGLHSETI--VTNLYGPTECTTFSTAqqaisiFP-SSLNKRIG-IGTGQGLCAWLVNPSDHTKLVPLGCVGEVLLEGPLVAAGYLE 1490
                   ****************85..8*************7778777544.34434555.777755566666655668999********************* PP

                   -HHHHHHHEEE...............TCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding  381 kpeataeafds...............egrwlrTGDlgrldedGyleivgRkkdlikl 422 
                   ++e+t  af+                +gr+++TGDl+r+d+dG+l+++gRk+ ++k+
   CCE30174.1 1491 DEEKTTAAFFHdppwllegcqhhagrHGRLYKTGDLARFDTDGSLFFLGRKDSQVKI 1547
                   *********97789********9975478**************************98 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.0   2.4e-47   7.3e-44       2     441 ..     699    1114 ..     698    1131 .. 0.81
   2 !   99.6   0.0   5.5e-32   1.6e-28       2     327 ..    1796    2097 ..    1795    2103 .] 0.82

  Alignments for each domain:
  == domain 1  score: 150.2 bits;  conditional E-value: 2.4e-47
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    +d+ p +p+Q   + ++   ++s  y+  +vl+l++++d +rl+ka+++++ + ++LRt+++    +  vQv+ +e+++  ++        ++ e
    CCE30174.1  699 EDIFPCTPLQ--ELLIALTAKHSGDYVSRHVLQLHPKVDTNRLQKAWNQVVAMTPILRTRIIDLSHQGLVQVVISESPTWTHTDGR-----TSLE 786 
                    68899*****..99999999******************************************999***********9987743333.....3334 PP

                    HHHHHHHHHHHTC--SCCCS-SEEEEEEES...STTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCS CS
  Condensation   97 eaieefaqkdlqepfdLekgpLfraalfki...aenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyles 188 
                     + +  ++     + ++   +L++  l++    +e r +++l++HH i DG+Sl++ll+ +a++Y     ge+  ++++ ++++++++       
    CCE30174.1  787 PCRNGEIN-----HAEVLGTSLVHSRLIEEsfgDEIRRFFVLTMHHAIYDGWSLQLLLERIAETY----AGETR-AGTSVQFQSFIKH----IID 867 
                    44444444.....34444445555555442111588999**************************....88885.555555*******....556 PP

                    HHHHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT CS
  Condensation  189 kdlekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes 283 
                      l +++++Ws q+e++++  ++p+   +++ ++ +ad+ls+     te +        gvt  + l+aa+++l s yt+ dd+v+g+++sgR+ 
    CCE30174.1  868 IPLDESSKFWSAQFERFEA-QNFPEL--PSPRYEPRADQLSVHG--MTELQWP---DIIGVTASTTLQAAWSILTSSYTNADDTVFGVTVSGRQA 954 
                    66788**********9887.347777..4455555555555544..5555544...4569*********************************** PP

                    CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HH...CCCEEECCCC. CS
  Condensation  284 eikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgq...eseeeesqls. 374 
                     + ++++m+G  + t+P ri++++  t +e++++v+ +  +  + ++ +l+ +++ + + +   r   f++ ++++    +    +    + l+ 
    CCE30174.1  955 TVRGVDQMIGPTIATVPKRIRLSKRSTVAEFLRQVQMQSISLTKFEQAGLQTIRRVSPEAE---RACGFQTLLVIQPAADEkekAACDGLFVLAg 1046
                    *****************************************************99998555...6889*******99666654333344455553 PP

                    SEEECEE....E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSB CS
  Condensation  375 elklsvssve.aeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqk 441 
                    +++l  ++   + e + y lsle   ++++  ++  + ++l de ++  +l++l+++l ++ +  +++
    CCE30174.1 1047 GGELWSQVEDpMAEFRTYPLSLECHLDDDGVVVSARFDSKLLDEGKVAVLLRQLEHVLRRLCDVKSHQ 1114
                    344444444599**********************************************9987655554 PP

  == domain 2  score: 99.6 bits;  conditional E-value: 5.5e-32
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    +d  p +p+Q++++ l    +++  y+  +v  l++++d e + +a++++++  ++LRt+++   +++ vQvi +e ++++ +l  +  ++s   
    CCE30174.1 1796 EDAFPCTPLQEGLLALTA--KRPGDYVARFVYPLQPSVDTEHFVRAWEAVVSVSPILRTRIIDLGETRLVQVIVNE-PTTW-ALRGE--STS--- 1881
                    78899*******998875..55789************************************99889999**99855.3444.23333..111... PP

                    HHHHHHHHHHHTC--SCCCS.-SEEEEEEES.STTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSH CS
  Condensation   97 eaieefaqkdlqepfdLekg.pLfraalfki.aenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqylesk 189 
                     ++ e+a k+l+ ++    g p  r+a++k   +++ ++++++HH + DG+S++++l +l  ++ +  + +++ lp+++p ++++++      s 
    CCE30174.1 1882 LDAYEIADKKLSTGL----GtPMARFAVIKDpVTDSRFFIWTIHHALYDGWSISLMLDKLNVAF-HQSESHNILLPSSPPMQTFVKH----VISI 1967
                    224566666444444....459999999984146777899************************.666778889999999*******....8888 PP

                    HHHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHH.HSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT CS
  Condensation  190 dlekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrkla.keqgvtlndvllaalgllLskytgqddivvgteisgRes 283 
                    d+ ++++YW++q+ g+ ++  +p+     +++s++   +s ++   +++++r+l   + ++t      aa+++l  kyt + d+++g+++sgR+ 
    CCE30174.1 1968 DQDDAARYWDKQFHGFGAM-IFPTA----PSNSYQ--PISNAF---IKHRIRDLRwPKIDITPSIMVRAAWSMLAAKYTDRPDVIFGVTVSGRQA 2052
                    8899***********8874.36666....788888..555555...6778888761456899999999*************************** PP

                    CSTCHHC--SS-EEEEEEEEE--TT-.BHHHHHHHHHHHHHHHHC CS
  Condensation  284 eikdiermvGlFvntlPlridvkeak.tfselikrvkedllkaep 327 
                    ++ d+e++vG  + t+P+r+ + + + t  el+++++++++++  
    CCE30174.1 2053 AVADVEQIVGPTIATVPVRVSLHQTEmTVIELLRNIQAQAVEMTA 2097
                    **********************88886777**********99965 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.2   4.1e-15   1.2e-11       2      65 ..     594     656 ..     593     658 .. 0.96
   2 !   39.4   0.0   1.9e-13   5.8e-10       3      66 ..    1686    1748 ..    1685    1749 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 4.1e-15
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65 
                 +l++l+a+vlg+  +e+++ +++  lG+DS++a++l++  +++ g++++++d+f+hp l +++a
  CCE30174.1 594 RLQALWATVLGLRIDEVGAKDSFLRLGGDSISAMRLVGIARDH-GLSLSVADIFNHPVLDDMSA 656
                 699***************************************9.*****************987 PP

  == domain 2  score: 39.4 bits;  conditional E-value: 1.9e-13
  PP-binding    3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66  
                  l+ l++ vlgv+++ i++++++   G+DS++a++l+aa +++ g +++++++f+hp l +la++
  CCE30174.1 1686 LQGLWSAVLGVETKCISAEDSFLRIGGDSIAAMRLVAAARKQ-GMSLTVTQVFQHPLLCDLAKL 1748
                  889***************************************.*************88888776 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00029      0.87      29      76 .]     498     556 ..     482     556 .. 0.71
   2 ?   -3.3   0.0         6   1.8e+04      41      65 ..    1224    1253 ..    1207    1256 .. 0.56
   3 !   16.2   0.0   5.4e-06     0.016      22      76 .]    1584    1646 ..    1567    1646 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00029
                    -EEEEEE--....----.........HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C  29 lvafVvlkd....gsea.........leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    lvaf   ++    +            l + L++++ + l++y+ p++ + ++ lpk++sGK
     CCE30174.1 498 LVAFLQMETptgnD--NggrqleldaLLNGLNERLVTCLPAYMIPSAYIPLEILPKNASGK 556
                    56665543222220..122234456688889999999***********************9 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6
                     -....HHHHHHHHHHHHT-TTTS-S.EEEE CS
  AMP-binding_C   41 a....leeeLkahvrkelgpyavpk.kvvf 65  
                     +     e+ L++ v +el+    p+  vv+
     CCE30174.1 1224 LdyaqPEDRLRSIVDQELARRLSPHsSVVV 1253
                     133334688888888888877666645554 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 5.4e-06
                     --TTS---EEEEEE....---..---......HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   22 devkGealvafVvl....kdg..sea......leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                     d+    +lvaf+      ++g    a      + + L+a++ ++l++y+vp++++ ++e+p t+sGK
     CCE30174.1 1584 DK---AMLVAFIQVsvasESGniD-AqdefasITAGLQARLLAQLPAYMVPSAFIPIEEIPVTASGK 1646
                     44...7889997752221223441.13467889999******************************9 PP

>> DotD  DotD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         1   3.1e+03      28      54 ..      17      43 ..       5      46 .. 0.70
   2 ?   -0.3   0.0      0.33   9.8e+02      79     102 ..     971     993 ..     956     995 .. 0.77
   3 ?   11.1   0.3   9.7e-05      0.29      72     102 ..    2061    2092 ..    2054    2097 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1
                -------TTTS---GGGEEEEEEEEEH CS
        DotD 28 psplkdaieslpgelnrrvsvdWsGpl 54
                +s++ ++  ++  ++ +++ ++W+G++
  CCE30174.1 17 HSKAPTSAGDIITDYDLQLIWKWNGSV 43
                44455555566667999********87 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.33
                 --EEEEEEEEEEHHHHHHHHHHHH CS
        DotD  79 pvlvnvnakeeplaeiLrdigyQv 102
                 p  + ++    ++ae+Lr++++Q+
  CCE30174.1 971 PKRIRLSK-RSTVAEFLRQVQMQS 993
                 55555554.889**********97 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 9.7e-05
                  ES--.-SS--EEEEEEEEEEHHHHHHHHHHHH CS
        DotD   72 lGkr.pavpvlvnvnakeeplaeiLrdigyQv 102 
                  +G+    vpv v++ ++e++++e+Lr+i++Q+
  CCE30174.1 2061 VGPTiATVPVRVSLHQTEMTVIELLRNIQAQA 2092
                  55551359**********************97 PP

>> Transferase  Transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00012      0.36     150     203 ..     823     883 ..     820     907 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00012
  Transferase 150 vsvsHaiaDgaSlktfieswaelargekkvtvtplfa...relllprpeppsv....efdq 203
                   ++ Hai Dg Sl+ ++e  ae+ +ge  + ++++f+   +  + ++ ++ s+    +f++
   CCE30174.1 823 LTMHHAIYDGWSLQLLLERIAETYAGETRAGTSVQFQsfiKHIIDIPLDESSKfwsaQFER 883
                  5899***********************8777776665111444555533333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.03u 0.26s 00:00:01.29 Elapsed: 00:00:00.45
# Mc/sec: 13969.83
//
Query:       CCE30175.1  [L=8077]
Description: related to non-ribosomal peptide synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
          0 1326.0   0.0    2.1e-77  260.5   0.0    6.2  6  AMP-binding    AMP-binding enzyme
          0 1105.2  11.3      1e-42  146.4   0.0   10.2 10  Condensation   Condensation domain
    4.5e-63  209.5   0.3    7.5e-11   42.2   0.0    8.1  7  PP-binding     Phosphopantetheine attachment site
    4.5e-16   59.6   0.0      0.054   14.5   0.0    5.9  5  AMP-binding_C  AMP-binding enzyme C-terminal domain
    1.9e-12   46.6   0.2       0.08   11.6   0.0    6.1  7  Transferase    Transferase family
  ------ inclusion threshold ------
        0.3   11.4   5.6         39    4.6   0.1    4.7  4  DUF5122        Domain of unknown function (DUF5122) beta-prop
       0.53    9.8   5.0        1.6    8.3   5.0    1.8  1  Period_C       Period protein 2/3C-terminal region


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.4   0.0   1.9e-70   4.9e-67       3     422 ..     113     511 ..     111     512 .. 0.86
   2 !  231.3   0.0   6.1e-72   1.6e-68       4     422 ..    1677    2072 ..    1674    2073 .. 0.87
   3 !  168.7   0.0   6.1e-53   1.6e-49     116     422 ..    2785    3079 ..    2731    3080 .. 0.85
   4 !  190.2   0.0   1.8e-59   4.5e-56       3     422 ..    4279    4678 ..    4277    4679 .. 0.84
   5 !  260.5   0.0   8.2e-81   2.1e-77       3     422 ..    5835    6233 ..    5833    6234 .. 0.89
   6 !  240.8   0.0   7.7e-75     2e-71       2     422 ..    6911    7310 ..    6910    7311 .. 0.88

  Alignments for each domain:
  == domain 1  score: 226.4 bits;  conditional E-value: 1.9e-70
                  HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEE CS
  AMP-binding   3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvlia 100
                  ++a+++pd+ a+     +  ++Y+eld+ ++rlA +L slGvk+++ V ++ ++s  + v++l+++kaG++ v ++ + ++ +l+ i+++  + +l+ 
   CCE30175.1 113 TSAQRQPDALAVNA--WDGDFSYGELDAISTRLAFYLASLGVKPETIVPLYFEKSKWMPVTMLGVMKAGGASVLMDLSQPKSRLQAIIDQIAPVILL- 207
                  5799********66..7889*****************************************************************************. PP

                  TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSC CS
  AMP-binding 101 tvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfk 198
                   ++s++    +++aa+l  +++ +v  +++l k   l++++    ++    +  +++p++ ay+i+TSG+TG+PKG++++h+n++++v+ ++l   ++
   CCE30175.1 208 -TSSRN----EKVAAEL--TSTPVVAVSGNLVKR--LHDSD---PVE----QLLRTQPWNKAYLIFTSGSTGTPKGAIVTHENVCSAVRYQQLA--HG 287
                  .76554....4444433..333333333444433..33333...222....334689******************************9997543..45 PP

                  CTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EB CS
  AMP-binding 199 lkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggepls 296
                   ++d +v+ + ++a+++++  + + ++++Ga+++++++d+++d   l + i+++k++++  +P+++ al  +            +sl +++lgge+ls
   CCE30175.1 288 YRADARVYDFTSYAFDTAW-NNFMHTFTVGACLCIPSEDERRD--DLTGSINRFKPSMLDITPSAATALPLA----------TVQSLCTLILGGESLS 372
                  56899**************.*****************999977..489*********************554..........456999999******* PP

                  HHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBE.ETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE.. CS
  AMP-binding 297 pellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepv.pdgeeGellvrgpgvmkgYlkkpeataeafds.. 391
                     ++++++++   +  +YG+ E+t+  t+++ + + ++ + +G+ + g+   i+D+ + + + p g  Gel++ gp v +gYl+++e+ + af+   
   CCE30175.1 373 LWQAEKLSSVV--DLKLAYGPCECTPTSTIATVDPKATSDPNIGRGV-GIVTWIIDPRDHNALaPIGAIGELVLEGPLVGQGYLGDEEKSKVAFIHnp 467
                  **********8..4899***********9988888889999*****7.555666677666665489*****************************778 PP

                  .............TCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 392 .............egrwlrTGDlgrldedGyleivgRkkdlikl 422
                               egr++rTGDl+r++ dG+l ++gRk+ ++k+
   CCE30175.1 468 qwllrggagtpgrEGRLYRTGDLVRYNSDGTLAFLGRKDAQVKI 511
                  9*********975578**************************98 PP

  == domain 2  score: 231.3 bits;  conditional E-value: 6.1e-72
                   HHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding    4 qaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99  
                    a+k p ++a+     +  +TY+ ld++++++A++L  lGv++g  V ++ ++s  + va+la++kaG++ v l++tl++e+l  i+e++++ v++
   CCE30175.1 1677 IARKDPCAPAICA--WDGDFTYAALDDAASKVARYLATLGVRPGVIVPLCFEKSKWMPVAMLAVMKAGGASVALDSTLPEERLLSIVEQVNPIVIL 1770
                   5788888999966..7789***************************************************************************** PP

                   ETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHH CS
  AMP-binding  100 atvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkle 194 
                     ++  l +e+l +  a     ++v ++d  + l  ++l+++++           ++++p +++y+++TSG+TG PKGV+++h n++++++ +++ 
   CCE30175.1 1771 --TS--LgNEELTKRLA---GCSTVPLSD--SHL--ARLDTTTGIL---------PSVEPCNMLYVVFTSGSTGVPKGVIITHSNFSSAIRYQQV- 1845
                   ..43..32344433333...222233333..222..3344444333.........35799*****************************999643. PP

                   HCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEE CS
  AMP-binding  195 trfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvll 290 
                      ++k++++v+ ++ +a+++ + ++ l ++++Ga+++++++ ++ d   + e +++++++++ ++P+v+  l             dl  l ++l+
   CCE30175.1 1846 -ALGFKRSSRVYDFVKYAFDVTW-SNFLHSMTAGACLCIPSEAETSD--NITESLNNFRANFVDLTPSVASTLCPT----------DLTTLDQILF 1927
                   .3667789***************.***************99888844..688*********************886..........899******* PP

                   ESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHH CS
  AMP-binding  291 ggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeata 386 
                    ge+l  +++ ++ +  +   l++YG++E+t+ +t+ +  ++++++ s+G  +  + + +   +++++vp g++Gel + gp v  gYl++p++t+
   CCE30175.1 1928 SGEALTTHIAAQWAEDKI--ALNTYGPAECTVKATFSKVGKSDASAASIGSGFGLCTWVVQSADHNKLVPIGVVGELILEGPLVGDGYLNDPAKTE 2021
                   ***************966..59************9977777788999*******99999**9999******************************* PP

                   HHEEE...............TCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding  387 eafds...............egrwlrTGDlgrldedGyleivgRkkdlikl 422 
                   eaf++               + ++++TGDl+r+d+dG+l+++gRk+ ++k+
   CCE30175.1 2022 EAFIDspdwlvggakgysgrKVKLYKTGDLVRYDADGSLKFIGRKDGQVKI 2072
                   ****8899*********976433**************************98 PP

  == domain 3  score: 168.7 bits;  conditional E-value: 6.1e-53
                   CC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHC.SCCTTT-EEEESS- CS
  AMP-binding  116 kleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletr.fklkeddvvlsilp 210 
                   +l + + viv+d+  +l     ++++  +         +++kp+d++yi++TSGTTG+PKGV ++h n+++++  +   +  +++ ++ +v+ +++
   CCE30175.1 2785 RLSSERPVIVIDERLILSL---EARA--N-----G-ALPTVKPSDTLYIVFTSGTTGTPKGVRITHSNFSSAIVHQRSAHNfDNV-ANARVYDFAS 2868
                   4444455555553333322...1111..1.....2.33468****************************9999996544442444.799******* PP

                   TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHH CS
  AMP-binding  211 lahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggeplspellrffral 306 
                   +a+++++  ++l++l +G++++++++ +++d   l++ ie++++t++   P+ +  l  s           l+ l +++lgge+l+  + ++++ +
   CCE30175.1 2869 CAFDTSW-QNMLATLDCGGCLCIPSEAERRD--DLAKSIERFEITHLEMSPSGAMVLPLS----------TLKNLNTLILGGEKLQGCVKEWASVV 2951
                   *******.****************9999966..589*****************9998554..........57789***********9999888888 PP

                   HTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBE.ETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE.......... CS
  AMP-binding  307 fgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepv.pdgeeGellvrgpgvmkgYlkkpeataeafds.......... 391 
                         ++YG+ E+t+   v++ +    + g +G+  +gv   ivD +tge + p g  Gel++ gp v +gYl++p++ta+ f++          
   CCE30175.1 2952 ST---KNSYGPCECTPTSLVADVDSVAFNGGNIGRG-RGVNTWIVDTKTGESLmPVGSIGELMLEGPLVGPGYLGDPDKTASLFVEnplwltrgfl 3043
                   64...6************777777777899999*99.9************998789*****************************889******** PP

                   .....TCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding  392 .....egrwlrTGDlgrldedGyleivgRkkdlikl 422 
                        +gr+++TGDl++++edG+l ++gRk+ +ik 
   CCE30175.1 3044 dhpgrNGRLYKTGDLVFYNEDGTLTYIGRKDSQIKF 3079
                   **874377**************************95 PP

  == domain 4  score: 190.2 bits;  conditional E-value: 1.8e-59
                   HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding    3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98  
                   + a+++p+ +a+     +  +TY+eld++++++A+ L +lGv  gd+Va++ ++s    +a+la+lk+G+v+  l+++ ++      +e s++k+l
   CCE30175.1 4279 DVAKRRPESIAVDA--CDGVWTYAELDRHATQIAQQLGHLGVSIGDVVALYFEKSRWVSLAMLAVLKIGGVATLLDSSQSESVFVRTIELSDPKLL 4372
                   6799********55..6678**************************************************************************** PP

                   EETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHH CS
  AMP-binding   99 iatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkle 194 
                   +   +s     + + aa++ + ++v+v+ +d l++     e +   ++     + ++ ++++ a++iY+SG    PK V l+h+nl+++v+ +  +
   CCE30175.1 4373 L--SSS-----VMKPAAAKITNRSVLVINSDLLETL---AEVD---SS-----TLPRFQSSNHACLIYSSGFSASPKCVALTHDNLSSAVKHQ--R 4448
                   *..333.....3333444455667888886554433...2222...22.....2346789999**************************9996..3 PP

                   HCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEE CS
  AMP-binding  195 trfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvll 290 
                   + ++ +++++v+ ++p+a  + +     +++++G++++++   +a ++++l + i+++++t++  +P+v+  l ++            +sl+++++
   CCE30175.1 4449 DIQGYHAESRVYDFMPYASQITW-KVFSYTFTCGGCLCVPF--EAEHKQALENSISRWQPTILDIAPSVATVLPDH----------IVQSLETLII 4531
                   34677889***************.55555555566666633..333367899*********************998..........4569****** PP

                   ESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE...CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBE.ETTSEEEEEEEETTS-SEBTT-H CS
  AMP-binding  291 ggeplspellrffralfgeevlegYGlTEttgvvtv...lpleedkkklgsvGkplpgvevkivDeetgepv.pdgeeGellvrgpgvmkgYlkkp 382 
                   gge +sp+ +r++  l+ + +  +YGl E t+vv+    + +e      +++G+ + g+   ivD  +g  + p g  Gel++ gp +  gYlk+ 
   CCE30175.1 4532 GGEHVSPDDARRWAHLV-D-LKFTYGLFESTPVVIAgtvCLEEA---DEPRIGRGV-GMNTWIVDAREGTSLaPVGSIGELVLEGPLIGAGYLKDN 4621
                   ****************8.4.899***********5533333344...4688****6.888999999999888579999****************88 PP

                   HHHHHHEEE................T.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding  383 eataeafds................e.grwlrTGDlgrldedGyleivgRkkdlikl 422 
                   e+   a++                   g+++rTGDl+r+++dG+l +v Rk ++ k+
   CCE30175.1 4622 EKLDAAIIHdpcwltqgnsdtkhpgRtGQLFRTGDLVRYNRDGSLTFVARKENQTKV 4678
                   888888886689999*******9863456************************9886 PP

  == domain 5  score: 260.5 bits;  conditional E-value: 8.2e-81
                   HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding    3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98  
                   ++a+++pdk+a+     +  +TY++l++ +n+lA  L+slGv  g++V ++ ++s    va+la++kaG++ v l+ +l++++l+ il++++++++
   CCE30175.1 5835 KTARQFPDKPAICA--WDGDWTYQQLEDVSNKLAYKLLSLGVSVGNVVPFCFEKSRWTPVAILAVMKAGGTNVALDFSLPEDRLRVILQQVKPSII 5928
                   6899********77..7889**************************************************************************** PP

                   EETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHH CS
  AMP-binding   99 iatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkle 194 
                   +   +s +     +++ak+ + + + v+d++++      k+ +++++        ++ +p++++yii+TSG+TG+PKGVm+sh+n++++++ + l+
   CCE30175.1 5929 L--SSSSN-----AEMAKRLTMAPIFVVDEASVTLL---KSISSPAK------VFPKFTPSNIVYIIFTSGSTGTPKGVMISHGNFASAIHHQRLP 6008
                   *..43333.....44444455667888896665433...33333332......345689******************************9995444 PP

                   HCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEE CS
  AMP-binding  195 trfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvll 290 
                      +++++ +++ ++++ +++++  +l++al +Ga++++++++++  ++ l++ ++k+k+t++  +P++++ l  s            ++lr ++l
   CCE30175.1 6009 --LGFEPEARIYDFASYIFDASW-QNLFGALECGACLCIPSNFER--QNDLAGSLQKYKITHLDITPSAAQLLPLS----------TIKGLRSLVL 6089
                   ..567799***************.*****************9999..34599*******************99554..........4559****** PP

                   ESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHH CS
  AMP-binding  291 ggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeata 386 
                   gge+lsp l+++f++++  +v ++YG+ E+t+  t +  e  ++ + s+G+  +g+   +v      + p g  Gel++ gp v +gYl++ ++ta
   CCE30175.1 6090 GGESLSPILAQRFSSVV--SVRNVYGPCECTPTSTLASMESANVGVASIGRG-AGTNTWVVSTVCDSLAPIGSIGELFIEGPLVGPGYLNDADRTA 6182
                   ****************8..49*************98777788888999***9.7999999999989999*************************** PP

                   HHEEE...............TCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding  387 eafds...............egrwlrTGDlgrldedGyleivgRkkdlikl 422 
                     f++               +gr++rTGDl+ +++dG+l ++gRk+d+ik+
   CCE30175.1 6183 ACFIEnpswllrgseicagrQGRLYRTGDLVCYQPDGNLIFIGRKDDQIKI 6233
                   ****8899*********985578***************************8 PP

  == domain 6  score: 240.8 bits;  conditional E-value: 7.7e-75
                   HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESE CS
  AMP-binding    2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakv 97  
                   +e+a ++p+  a+     +  +TY+eld+ ++++A  L+slGv+++ +V ++ ++s  + va+la++kaGa+ v l++tl++++l+ il++ e+++
   CCE30175.1 6911 AETAHRQPNSSAVCA--WDGDWTYQELDSIASSIAYRLTSLGVGPDMVVPLCFEKSRWMPVAMLAVMKAGAASVALDTTLPRDRLRSILQHFEPSL 7004
                   57899********76..7889*************************************************************************** PP

                   EEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHH CS
  AMP-binding   98 liatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkl 193 
                   ++    s l   ++++a++l ++ +++v d+++     el ++e ++       + + + p+d +y+++TSG+TG PKG++++h n++++++ ++ 
   CCE30175.1 7005 VL--S-SSL---SRSIAEELTDRPIMVVGDENR-----ELFADEAPQ-------TLPVVLPSDKLYLVFTSGSTGVPKGAIVTHSNFCSAIHHQQ- 7081
                   **..2.223...456666666667777777444.....344344222.......33347899****************************99964. PP

                   HHC.SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEE CS
  AMP-binding  194 etr.fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlv 288 
                     +  +++++++v+  + +a+++++ ++ + ++++G++++++++ +    + ++  ++ ++++++  +P+v+  l +s          dlssl++v
   CCE30175.1 7082 --TiTGFRKTSRVFDLAKYAFDISW-SNFIHTMAAGGCLCIPSQHDS--IENIASSLQSFNANFMDITPSVATTLQAS----------DLSSLETV 7162
                   ..33567789***************.999************998887..445889********************777..........9******* PP

                   EEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE..CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-H CS
  AMP-binding  289 llggeplspellrffralfgeevlegYGlTEttgvvtv..lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkp 382 
                   +++ge+l ++ + ++++    +vl++YG++E+++ +t   l+     +++ s+G+ +  + + +   ++ ++vp g +Gel++ gp v +gY ++ 
   CCE30175.1 7163 VFAGEALTSHQAAQWSKQA--RVLNMYGPAECSVKATLaeLD-GSASSSAASIGRGVGACTWVVNPSNHDKLVPVGAVGELVLEGPIVGSGYIGDA 7255
                   ******************6..49*************886544.444478899*****9999999988899************************** PP

                   HHHHHHEEE..............T.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding  383 eataeafds..............e.grwlrTGDlgrldedGyleivgRkkdlikl 422 
                   e+ta af++                gr ++TGDl+ + +dG+l +vgRk++++k+
   CCE30175.1 7256 EKTAAAFVQdpawlllggpgysgRtGRVYKTGDLVQYAADGTLTFVGRKDNQVKI 7310
                   ********7899*********973578***************************8 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.2   0.00028      0.73     385     453 ..      19      89 ..       5      92 .. 0.86
   2 !  106.3   0.3   5.8e-34   1.5e-30       6     448 ..     740    1177 ..     737    1181 .. 0.81
   3 !  121.4   0.0   1.5e-38   3.9e-35      37     414 ..    1246    1603 ..    1208    1651 .. 0.78
   4 !  124.2   0.0   2.1e-39   5.5e-36       2     454 ..    2316    2739 ..    2315    2742 .. 0.82
   5 !  136.4   0.2   4.3e-43   1.1e-39       5     445 ..    3349    3782 ..    3346    3788 .. 0.83
   6 !  124.0   0.0   2.5e-39   6.4e-36      37     444 ..    3854    4241 ..    3816    4246 .. 0.80
   7 !   98.9   0.3     1e-31   2.6e-28       7     439 ..    4909    5333 ..    4904    5345 .. 0.74
   8 !  146.4   0.0   3.9e-46     1e-42      35     418 ..    5410    5774 ..    5373    5810 .. 0.81
   9 !  137.5   0.0     2e-43     5e-40       2     436 ..    6468    6869 ..    6467    6888 .. 0.80
  10 !   93.6   2.9   4.3e-30   1.1e-26       2     440 ..    7550    7961 ..    7549    7971 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00028
                   E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHH..HHSTTSBCCC-----HHHH CS
  Condensation 385 aeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqv..iehpeqklselkllsdaek 453
                     e    +l+le + + ++++++++Y ++  + e+++r++ +++++l q+  +e+ +++ls+++++s+ ++
    CCE30175.1  19 VTEHDTHALTLECTLQRQGMSLRVAYDSNILEIEQVNRLAAQFEHTLRQIcmLENASKTLSSIEMVSPHDT 89 
                   456677899***************************************974479************99876 PP

  == domain 2  score: 106.3 bits;  conditional E-value: 5.8e-34
                    EXXCCHHHHHHHHH.....HSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-..TT-----EEEE-T..TSS CS
  Condensation    6 plspaQkrmwflek.....leeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvil..eerevelevleisdlees 93  
                     lsp+Q   wf+++     + ++ + +n+ +++kl+  + ++ +++a+q+++erh  LR +f ee +g  vQ+i   e++ +++ + + +  +  
    CCE30175.1  740 NLSPMQ--KWFFAQcpsdaITQADYYCNQGFYVKLNRHVPIKKVSSAIQTIVERHSMLRAQFAEE-KGGWVQRIPapEDSAYHFSYADSQ--SV- 828 
                    69****..9***99333334678899************************************766.********9666666666555544..22. PP

                    SHHHHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCS CS
  Condensation   94 eeeeaieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyles 188 
                      +e i + a+k + +++d+++g  f a l+++ ++  +l+l  HH++vD vS++++l dl ++      g+ l    +t ++++   +++++ s
    CCE30175.1  829 --KE-IMANASK-SHQGLDIKRGLVFSADLYTLPTKDQYLILIAHHLVVDLVSWRVILDDLESVM----LGKRLHH-GFT-FQQWTTLQTDVALS 913 
                    ..33.4445553.799************************************************9....8999877.677.99999999999999 PP

                    HHHHHHHHHHHHHHH......S---BSS---SS---S-EEEEEE...EE-S-HHHHHHHHSTSS-HHHHHH.HHHHHHHHHHHT-SEEEEEEEEE CS
  Condensation  189 kdlekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikl...deeteeklrklakeqgvtlndvll.aalgllLskytgqddivvgteis 279 
                     ++  ++   ++ + +   ++++ k ++ +  ++++ d ++ ++   +++t  +++++  +++++  d+ l ++++++      ++ + +  e++
    CCE30175.1  914 SEFAPDKVLLTQNVHN---NHEFWKFTEGTTPNTAS-DHIAKDIeldKATTLLLIKDANTAYNTEPVDLILsSIWHAFFRIFPTRQGLTIFNEGH 1004
                    9999999988888887...55566664444444444.55555444455777788999********88865527899**999999999******** PP

                    SSTT..CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SS.SS-S-SEEEEESSS-HH....CCC CS
  Condensation  280 gRes..eikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkes.rspLfdpvfsfenylgq....ese 367 
                    gRe   + +d++r+vG+F+   P+ +   +++  s+l + vk++ ++  p +g  + ++ ++l++q  ++  s   + +++f ny gq    e  
    CCE30175.1 1005 GREPwtPEIDLSRTVGWFTTLSPIHVSRIDGDVASHLARLVKDTRRRL-PSNGWAY-WVSRHLNEQGIAAfASHSPTMEVQF-NYHGQfqqlERP 1096
                    ***99999*******************999999999999999999998.8888765.7778887777544133455566777.777776556555 PP

                    EEECCCCSEEECEE.....E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC---- CS
  Condensation  368 eeesqlselklsvssve..aeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklselkll 448 
                     + ++   ++ +vs v+    +   +d+++ ++   g  +i++++n+ l ++  i+ ++ ++k+ l  +  + ++k+ e +l 
    CCE30175.1 1097 DSLFEVVNFDDEVSAVGplLPTSVLFDINVVVQA--GVTKISFSWNRHLAHQDLIRDWAAQIKDSLRSICFELSKKQTETTLC 1177
                    5666666777777777666778889999999998..999******************************99999999887765 PP

  == domain 3  score: 121.4 bits;  conditional E-value: 1.5e-38
                    S---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-.TT-----EEEE-T..TSSSHHHHHHHHHHHHHTC--SCCCS.-SEEEEEEESSTT CS
  Condensation   37 geldlerlekalqelierhdaLRtvfleeengepvQvil.eerevelevleisdleeseeeeaieefaqkdlqepfdLekg.pLfraalfkiaen 129 
                     ++++++l++a+q+++ rh++LRtvf+    +  v +++   ++++  ++ ++ ++  +   a + +++  + + ++ + +  L+ a ++   ++
    CCE30175.1 1246 HKININALQEAWQTVVARHPSLRTVFIDS-VDASVAFNSvVLKSLHGDIILLESDSFAS---ACSMLKEVPKVNYYQAKPAhRLVLATILG--DD 1334
                    47999*********************865.66667666666666666667777334444...34444442223344443334677777777..** PP

                    EEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S---BSS---SS--- CS
  Condensation  130 rlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekeeaYWseqlegelpvlqLpkdkarpakrsfk 224 
                    r+l+ +++ H i+DG S++i + d a++Y   ++ eel++ + + +     +    l      ++ +YW+  l+g l+   +p+  ++ + ++f 
    CCE30175.1 1335 RVLCKIEMSHAISDGASTSITMTDWARAYSGELDIEELSDVTQQ-FT---RA----LSLVPKADKISYWKSKLSG-LEPCHFPRLGDSVPIDEFA 1420
                    *****************************666666666664444.33...44....44445567899********.55699************** PP

                    S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHH CS
  Condensation  225 adrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvGlFvntlPlridvkeaktfselikrvk 319 
                      +++ kl+++   ++++++++ +vt  ++++ a++l+Ls ytg+d + +g  +sgR  ++k+i +++G F n++  r+d++++ +  +l++ v 
    CCE30175.1 1421 TATVTWKLEDNALPQMKRFCEACSVTPASLFQCAWALTLSAYTGSDSVCFGYLASGRDIAMKGILDAIGAFANVMTCRVDIDREWSSDQLVHHVH 1515
                    ************************************************************************************9999******* PP

                    HHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE...E.....SSEEEEEEETTSSEEEEEEEETTT CS
  Condensation  320 edllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssveaeeeskydlsleasetngkltikieYntsl 414 
                     ++l+ ++ q     +++++l l+     + Lf++++s++    +++ +e  q + l ++      e+ ++yd++++++ tn + +++++Y+++ 
    CCE30175.1 1516 GQVLEDLNFQHCSIADVQHELGLPYG---QSLFNSIMSYQA--DDDDLTEGIQTQHLVFT--DLDWEDPTEYDMTINIRHTNASVYLTLNYRSAC 1603
                    *************************7...57********98..33444444444444444..33367999*********************9875 PP

  == domain 4  score: 124.2 bits;  conditional E-value: 2.1e-39
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    +d+ p sp+Q++++ l   +++   y+ q +l l+   d+ r+++a+++++   ++LRt++    ++  vQ il+e+   l+ +++sd   +e+ 
    CCE30175.1 2316 RDIFPCSPLQEGLLALT--SKRAGDYVAQYTLPLKYTTDVGRFRRAWEKVLMVTPILRTRIADIPDQGLVQAILDEEARWLQCFDVSD--YREQV 2406
                    578899******98876..556789************************************9999***********9999999****4..33333 PP

                    HHHHHHHHHHHTC--SCCCS-SEEEEEEESSTT..EEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSH CS
  Condensation   97 eaieefaqkdlqepfdLekgpLfraalfkiaen..rlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqylesk 189 
                    e+i          p+ L   pL+r ++ k++en  r ++ll++HH + DG+S+++++  l ++Y    kg ++ l+q++p+++++++      s+
    CCE30175.1 2407 EKI----------PMGLG-NPLVRYSVTKLSENdqRSVFLLTIHHALYDGWSMSLIMSRLERAY----KG-DVVLQQTPPFQRFVKH----ILST 2481
                    334..........44443.4*******999875337899*************************....55.568999999*******....7777 PP

                    HHHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTC CS
  Condensation  190 dlekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRese 284 
                      ek+ ++W+ ++e  ++   +pk     ++ +++  +    +++ + e+lr    e+++t  +   aal++l  + t+++d+v+g ++sgR+  
    CCE30175.1 2482 SDEKSTRFWKGRFEA-CEAQVFPKL----PSTTYQ-PTANSYFNHYI-ENLR--WPENDITASTAIRAALAILTARHTNSEDVVFGETVSGRQAD 2567
                    789***********8.443446666....333333.22222222222.2222..4799************************************* PP

                    STCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HH.CCCEEECCCC.... CS
  Condensation  285 ikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgq.eseeeesqls.... 374 
                    + ++++m+G  + t+P r+ ++ ++    ++ r++++ +++   ++++l+++++   + ++      f++ + +  + +  + +++ +  s    
    CCE30175.1 2568 VHGVDEMTGPTLATVPARVVLDWDEPVETFLDRIQTQHVQMTAFEQTGLQKIRRMGIHAKQ---ACDFQTLLLIHPFEQAtQLDTQIFAVSghhd 2659
                    ****************************************************887776665...3459999999887776766666666663322 PP

                    .SEEECEE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHH..HHSTTSBCCC-----HHHHH CS
  Condensation  375 .elklsvssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqv..iehpeqklselkllsdaeke 454 
                     + +++ +   + +   y+ls+e    + +l++++e+     ++  +++f+++l+++l q+  ++h e  l++++++s+++ e
    CCE30175.1 2660 dGDEVGAQ---IAQFDTYALSIECELATCGLNVQFEFDDRILSRYRVQKFARQLENILRQLcnVKHKELCLKDVETVSTDDLE 2739
                    24444433...556889******************************************983356888888888888877655 PP

  == domain 5  score: 136.4 bits;  conditional E-value: 4.3e-43
                    EEXXCCHHHHHHHHH.....HSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSS CS
  Condensation    5 yplspaQkrmwflek.....leeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleese 94  
                      lsp+Q  +wf+++     +++ s+ +n++++++++ ++ ++ + +a+ +++++h  LR +f+++ +g+  Q++ e + +  +++  +  +++ 
    CCE30175.1 3349 FLLSPIQ--RWFFSQcpsdiVNTPSHRCNQSFYVRIHRQVSSKEVGDAVSKVVKQHSMLRARFQQQ-DGDWTQIVPEMKRARYHFESSTLHSME- 3439
                    579****..*****94444457789**************************************755.*********999999987777733333. PP

                    HHHHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSH CS
  Condensation   95 eeeaieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqylesk 189 
                        ++++a++  q ++d+e+g  f a l +i++ +l+l+l  HH+++D vS++i+l dl +l    + g  +++++++       w  + l+ +
    CCE30175.1 3440 ---ELQALASR-RQLGLDIERGLVFSADLCRISSGELYLVLIAHHLVIDLVSWRIILDDLETLL---TGGVLMESLPFQ------IW--NNLQHQ 3519
                    ...37888886.9************************************************999...566666666666......45..446677 PP

                    HHHHHHHHHHHHHH......S---B..SS---SS---S-EEEEEEEE-S-H.HHHHHHHSTSS-HHHHHH.HHHHHHHHHHHT-SEEEEEEEEES CS
  Condensation  190 dlekeeaYWseqlegelpvlqLpkd..karpakrsfkadrlsikldeetee.klrklakeqgvtlndvll.aalgllLskytgqddivvgteisg 280 
                    + ++++ Y  ++l+    +++L+    + r ++++ +   +s+++d ++++ +l+++ ++ +++  d+ll a++ ++  +  ++  + + + ++g
    CCE30175.1 3520 EAKSTKFYQPNVLSTDGVNNDLAFWdfESRAPNSTHDHVIKSFTIDRKITSlTLKNANNALNTEPVDLLLsAVWDAFFRTFLSRHGLTIFIDGHG 3614
                    7788888888999998888888876567777777777778899997666552788899999***9999884689********************* PP

                    STT..CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HH..CCCEEEC CS
  Condensation  281 Res..eikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgq..eseeees 371 
                    Res   ++di+r+vG+F+   P+ +    + +f+++++rvk++ +k   ++g  + + ++  ++ +++  s     ++ f ny gq  + e e s
    CCE30175.1 3615 RESwnTNIDISRTVGWFTTLAPINMSRGYGRNFTDIVRRVKDARRKL-AANGWKYFSSRYLNREGMDAFSSHESVMEMCF-NYHGQfqQLEREDS 3707
                    ***9999***********************************99999.77777777766666666665433333445566.77777668888888 PP

                    CCCSEEEC.EE.....E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC- CS
  Condensation  372 qlselkls.vssve..aeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklsel 445 
                     +se++l+ vs v+      s +d+++++ e  g++++++++n+   ++  i ++++++   l+ + +  + + +e 
    CCE30175.1 3708 FFSEIELQdVSDVGpdLPASSLFDVNMSIEE--GQIHVSFAWNRHISHQGLIVQWIDQIGPSLQSICQTLAPRSRER 3782
                    8999999988888766678899999999988..*************************9999999988776666655 PP

  == domain 6  score: 124.0 bits;  conditional E-value: 2.5e-39
                    S---HHHHHHHHHHHHHH-SSCCEEEEE....TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHHHHHHHHTC--SCCCS.-SEEEEEEESST CS
  Condensation   37 geldlerlekalqelierhdaLRtvfle..eengepvQvileerevelevleisdleeseeeeaieefaqkdlqepfdLekg.pLfraalfkiae 128 
                      +d+e l++a+q  i rh++LR  f+e  + n  + Qv+le+   ++ +l  +  +  ++   ++++       + + ++  p+ r al ++ +
    CCE30175.1 3854 HVIDVEKLQTAWQDTIARHPSLRSLFIEslDPNLAFNQVVLEAYCGDVVLLTSE--TLHSARLSLQSLP------KVKYQQLkPPHRLALCQVLD 3940
                    4599**********************9966689999999999998888555555..3333222233333......34444444999999999988 PP

                    TEE.EEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S.---BSS---SS CS
  Condensation  129 nrl.llllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekeeaYWseqlegelpvlq.Lpkdkarpakr 221 
                    +r  l+ +++ H+i+DG S+gil+ d ak+Yq ++ + +l+    t  +++a++    l   d e+++ YW+  l+g  p l  L+++  + ++ 
    CCE30175.1 3941 TRTlLCQIEMSHTITDGASTGILIDDWAKAYQGVLGKANLDG---T-CREFAQS----LVAGDAESKRLYWKRKLKGIQPCLFpLLDR-VSGPST 4026
                    77516779***********************88888888666...4.6788898....788889*************88887767777.333333 PP

                    ---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--SS-EEEEEEEEE--TT-BHHHHHH CS
  Condensation  222 sfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvGlFvntlPlridvkeaktfselik 316 
                    ++  +  +i++d ++ + l+k++++++vt  ++++aa++l+L +ytg+d + +g ++sgR  +i +ie+++G + n +  r d++++ +   +++
    CCE30175.1 4027 EAV-SWSMIDIDRALFSSLQKFCESHSVTPASLFHAAWALTLATYTGTDSVCFGYIASGRDLPIPGIEDAIGAYANLMVCRADISREWSKPRFVQ 4120
                    333.5779999************************************************************************************ PP

                    HHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE...E.....SSEEEEEEETTSSEEEEEEEE CS
  Condensation  317 rvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssveaeeeskydlsleasetngkltikieYn 411 
                     + +++l+ + +q   l ++++dl +       +Lf++++sf+     e+ +e ++ +e+++  + +   + ++y++++++s   +  ++ i+  
    CCE30175.1 4121 YLHHQVLEDMGYQHCSLADIQHDLGIVSG---YQLFNTIMSFQR--DIEQPTEGPMIQEFDFV-E-ADGDDPTEYEVAISISWGVDFAQLFINCL 4208
                    *************************8775...78********88..33677778888888888.3.33589999*****9999444445555558 PP

                    TTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC CS
  Condensation  412 tslFdeetierflerlkelleqviehpeqklse 444 
                     s+F +++  r+++++k + ++++ + ++++++
    CCE30175.1 4209 PSRFTNNQCHRIITTFKAITSKLVCDEHSQCDD 4241
                    99999*******999999999998888887776 PP

  == domain 7  score: 98.9 bits;  conditional E-value: 1e-31
                    XXCCHHHHHHHHHH.....SSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    7 lspaQkrmwflekl.....eeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    lsp+Q  +wf+ +l     + + + +n++++++++ ++  e +  a+++++++h  LR +f+ +  ++++ + ++  + e  v +++  ++ e  
    CCE30175.1 4909 LSPIQ--QWFFDQLpsdkvNSRDYYCNQAFYVRIKRQVLAEHVALAIDKVVQQHSMLRARFQLN--TTTRIWTQSIPKPEDAVYNFT-SSQVESL 4998
                    9****..****987222224556789***********************************766..445444544444443444555.2444556 PP

                    HHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHC.... CS
  Condensation   97 eaieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyle.... 187 
                    +++++++++   +++++e+gp f a +f++ + +  l l  HH++vD vS++i+l dl ++ +  +   elp +  ++ +  a++ q+ +     
    CCE30175.1 4999 NKVKSIITQ-RHQELNIERGPVFSADMFSLPSGEQILALIAHHLVVDLVSWRIVLDDLEAILCGSTIAGELPFQIWHDLQ--AKEAQSSRLspes 5090
                    789999996.999************************************************9777777777777777643..3333332221222 PP

                    ..SHHHHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHH.HHHHHHHHHHHHHT-SEEEEEEEEE CS
  Condensation  188 ..skdlekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndv.llaalgllLskytgqddivvgteis 279 
                      s+++e + ++W+ +++        p+  ++  + sf+ dr++ +       +l+++  + +++  d+ l +++ ++  +   ++ + +  e++
    CCE30175.1 5091 vfSAAIELDLSFWNFTFAT-------PNTFDDHVEHSFDVDRTTTAT------LLQEANMAFNTEPVDLiLASVWDAFFRTFETRKGLTIFNEGH 5172
                    2256677777888888877.......777777777777766655544......778888888888776516679********************* PP

                    SSTT..CSTCHHC--SS-EEEEEEEEE--TT-.BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEEC CS
  Condensation  280 gRes..eikdiermvGlFvntlPlridvkeak.tfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeees 371 
                    gRe   + ++i+r+vG+F+ + Pl +  ++++ +  +++k+++++l +   + ++    L ++   +  es + ++++ f++   + q+ e++  
    CCE30175.1 5173 GREPwaPEIEISRTVGWFTTMTPLHVSRDHSTsNIPKVVKDMRRQLPSN-GRAYFASRYLNSEGM-KVFESHNAVMEVLFNYHG-QFQQLESDDG 5264
                    ***99999******************99888756779999999998887.777777777755555.444577878887777744.4444455555 PP

                    CCCSEEEC.EE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTT CS
  Condensation  372 qlselkls.vssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpe 439 
                     ++ l +  +  v+ +  ++  +s+++s+++g  ++++++n+   +++ i+++++++   ++++ +  +
    CCE30175.1 5265 LFENLAFDdIFDVGSSLPASTLFSINVSIEGGLTRFTFSWNKFMNHQNLIRNWMTQVGPSMKAICSSLS 5333
                    555444443333333334445556666666688889999999999999999999998888887777665 PP

  == domain 8  score: 146.4 bits;  conditional E-value: 3.9e-46
                    EES---HHHHHHHHHHHHHH-SSCCEEEEE....TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHHHHHHHHTC--SCCCS-SEEEEEEES. CS
  Condensation   35 legeldlerlekalqelierhdaLRtvfle..eengepvQvileerevelevleisdleeseeeeaieefaqkdlqepfdLekgpLfraalfki. 126 
                     +  ld+  l ka+q++i rh+aLR vf e  ++ +   Q +l++ + e+ +le++  ++ e    + ++++k  q +++  ++p+ r  l    
    CCE30175.1 5410 GKRPLDVAQLAKAWQAIIVRHPALRSVFFEgvDKITAYSQAVLKSHQGEVVILEAQ--TKPE----AVALIRKLPQVNYQR-RKPPHRLVLCATg 5497
                    26789***********************9954466677788888888888777777..6665....456666644555554.4566666666551 PP

                    STTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S---B.SS---S CS
  Condensation  127 aenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekeeaYWseqlegelpvlqLpkd.karpak 220 
                    +++   + +++ H+ivDG S++ill d +k+Y  +++  +l +      ++++ +    l+ + l ++ aYW++ l+g  ++  +p+    ++++
    CCE30175.1 5498 EDSAIICQIEMSHTIVDGASTSILLSDWSKAYSGALDVTPLFE----TNRNFVRA----LKANSLTNKLAYWKKKLAG-VEQCHFPRLaDVSSPS 5583
                    56667899************************66666555554....34678888....88899999***********.666778877667999* PP

                    S---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--SS-EEEEEEEEE--TT-BHHHHH CS
  Condensation  221 rsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvGlFvntlPlridvkeaktfseli 315 
                    +s+   + s+++d +  e+++++++ q++t  +++++a++llLs ytg++ + +g + sgR  ++++ie+ +  + n++  r +v++  t +++i
    CCE30175.1 5584 NSMVTATASVDIDGKSFENIQRFCRIQSITPSSIFQSAWALLLSSYTGSSSVCFGYISSGRDLPVEGIEHSINAYANMMICRATVSHTLTSQQFI 5678
                    *********************************************************************************************** PP

                    HHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE...E.....SSEEEEEEETTSSEEEEEEE CS
  Condensation  316 krvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssveaeeeskydlsleasetngkltikieY 410 
                    + + +++l+ ++ q   l ++++dl+l  +    pLf++++sf+     +++  +++ + ++l    + +e+ ++ydls+ ++   ++lt++++Y
    CCE30175.1 5679 RGLHDQVLEDLDFQHCSLADIQHDLRLSPD---FPLFNTIVSFQK----DEDDAAKDVNVGDLVFIDMDHEDPTEYDLSFDITYGRSQLTLSLDY 5766
                    ****************************98...7*********88....8888888888888887777799************************ PP

                    ETTTS-HH CS
  Condensation  411 ntslFdee 418 
                    +ts     
    CCE30175.1 5767 RTSYLAPV 5774
                    **955444 PP

  == domain 9  score: 137.5 bits;  conditional E-value: 2e-43
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    qd  p +p+Q++++ l   +++s  y+ q +++++  +d+ r+++a+++++e  ++LRt+++   ++  vQ il e+++++ ++ i d ++    
    CCE30175.1 6468 QDAFPCTPLQEGLLALT--SRRSGDYVAQNTFRIQADIDIPRFKRAWEHVVETTPILRTRIVDLGTQGLVQLILAEEPATW-AEPIVD-TRVY-- 6556
                    7889********98775..667999*************************************999****************.455552.4554.. PP

                    HHHHHHHHHHHTC--SCCCS...-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCS CS
  Condensation   97 eaieefaqkdlqepfdLekg...pLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyles 188 
                          +++    +++Le g   pL+r a+ + + +++ ++++vHH + DG+S++++l+ l ++Y    +ge lp+p+  p++d+++  +++  s
    CCE30175.1 6557 ------LEA----DLKLEMGlgmPLMRCAITRDSVKQYSFIWTVHHALYDGWSMPLILQRLERAY----DGEVLPTPP--PFQDFVDFISDIDSS 6635
                    ......443....3333332225******************************************....9**999854..467777666665555 PP

                    HHHHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT CS
  Condensation  189 kdlekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes 283 
                         +e++W+ q+++   ++qL +  ++p  +  +++++s+ +        + +  ++++t  +   aal++l   y+ ++++ +g ++sgR+ 
    CCE30175.1 6636 H----AENFWASQFDQ--MQAQLFPSLPSPVYQPRSDNEISLHV-------ENLAWPKTDTTPSTAIRAALSILVAVYSDSSEALFGATVSGRQI 6717
                    5....999*******9..66786555366666666666666666.......23466899************************************ PP

                    CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEE CS
  Condensation  284 eikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselkl 378 
                    ++ +ie+m+G  + t+P+r+++++++t  +++++v++++ ++   ++++l+ ++k +e  rk      f++ + +     + +  + s++   ++
    CCE30175.1 6718 PVPGIESMTGPTIATVPIRVTLDKQQTVHDFLRQVQAQVIDVTAFEQTGLQAIRKISEAARK---ACEFQTLLIIHP--AE-EPGNSSSFLFDDP 6806
                    999*******************************************************9998...345899998855..22.2222222222222 PP

                    C.EE....E.....SSEEEEEEE...TTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHH CS
  Condensation  379 s.vssve.aeeeskydlslease...tngkltikieYntslFdeetierflerlkelleqvie 436 
                    + ++s+  +e+++ +d   +  e   ++ +  +++ + +++ ++++++r++ +l  +l q+ +
    CCE30175.1 6807 EeQDSSDaDESIAGFDTHAITLEcdlEKAGVLFRFRFDSQVINRAEVDRLACQLDVILRQLCN 6869
                    224555667888888876666555667888888999999999999999999988888888764 PP

  == domain 10  score: 93.6 bits;  conditional E-value: 4.3e-30
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    qd++p+++ Q r +     + +s  y   ++l  +g l+ + l +a+ +lier d +R vf+   ++ ++Q il+++++e+ ++e +  +++  +
    CCE30175.1 7550 QDILPVTDQQSRYLLGTYTQARSAVY--YHTLDRDGHLNWNQLYDAFVSLIERLDMMRAVFIAY-KDMFLQAILTHADIEISLFETA--TDT-LD 7638
                    88999***995544444444444444..567899***************************866.99**************999999..333.35 PP

                    HHHHHHHHHHHTC--SCCCS-SEEEE.EEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHH CS
  Condensation   97 eaieefaqkdlqepfdLekgpLfraa.lfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskd 190 
                    e + +++++dl +++   + p  +++ +++ +e+++ +++++ H   DG  l+ +   l ++        +l +++ + +++y +     l   d
    CCE30175.1 7639 EYTLKLKKEDLLHNLSFGQ-PVSKIYvIHQTQEQKYRIVIRLSHAQYDGTALSKMWAVLEDTN--SSTCASLGNSELS-FSRYMNV----LSLMD 7725
                    5677888888888877665.556666166888999***************9988888887776..3333455555566.9999999....66677 PP

                    HHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHH.HSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTC CS
  Condensation  191 lekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrkla.keqgvtlndvllaalgllLskytgqddivvgteisgRese 284 
                     +k+++YW+++l+g        + ++  + +++  +rl+ +l +++ +++  +   + + t  ++l aa++ +L ky+ ++d+v+g+ ++gR+++
    CCE30175.1 7726 KQKAKDYWQKMLQG--------SVRTAIKHQTT--HRLAYALGPTIIKTIPAFElHSDEFTFATILKAAWAYVLAKYSATQDVVFGSLVHGRNQP 7810
                    789***********........45344555555..59*************9985266789*********************************** PP

                    STCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEEC CS
  Condensation  285 ikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselkls 379 
                      + + + G  vn++P r+  +++ +  +li +v +++++ +p + ++  e+++++  + k      f++v++ +ny    +ee+    s++++ 
    CCE30175.1 7811 --GTQCVFGPCVNIVPTRVIFQHDWSIRDLIVAVHRQQVDGMPFEMMGSREIIQRCTSWPK---WAYFSSVIVHQNYESRPDEENPDVHSAIDID 7900
                    ..*******************************************************9997...679*************999999999999999 PP

                    EE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTS CS
  Condensation  380 vssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeq 440 
                        +  ++ + ++ ++ +++  + +i+i+++ ++ + +    +++ l+++++q+ ++ ++
    CCE30175.1 7901 SADLSTGDIDSVEVYITSTPSPTSTEIHICFTDNVISYSLAHSLASDLTDTIKQFYKDIDA 7961
                    5555569999********************************************9998765 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.3e-08   5.9e-05       3      65 ..     655     716 ..     653     718 .. 0.94
   2 !   41.3   0.0   5.6e-14   1.4e-10       2      65 ..    2210    2272 ..    2209    2274 .. 0.96
   3 !   24.9   0.0   7.6e-09   1.9e-05       3      65 ..    3268    3329 ..    3266    3330 .. 0.96
   4 !    8.3   0.0    0.0011       2.9       2      56 ..    4824    4877 ..    4823    4884 .. 0.91
   5 !   42.2   0.0   2.9e-14   7.5e-11       3      65 ..    6363    6424 ..    6362    6425 .. 0.97
   6 !   39.4   0.0   2.3e-13   5.9e-10       2      64 ..    7443    7504 ..    7442    7507 .. 0.96
   7 !   18.9   0.0   5.6e-07    0.0014       4      63 ..    8010    8069 ..    8007    8071 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.3e-08
  PP-binding   3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65 
                 l+++ + +l+v + +i+++t++ + G+DS++a++l +  +++  + i++++l+  +tla++a 
  CCE30175.1 655 LCDACSVILNVTPADINLQTSFISNGGDSISAMRLSSYCRDA-HLIISVAMLLKSKTLASVAS 716
                 67888899**********************************.7***************9985 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 5.6e-14
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                  +l++l+a+vl++ +++i++++++   G+DS+ a++l++  ++e g++++++d+f+hp l+e+a+
  CCE30175.1 2210 RLQSLWASVLDIKADSIKANDSFLRIGGDSIGAMKLVGISRKE-GLALTVADIFQHPKLSEMAK 2272
                  799************************************9999.*****************996 PP

  == domain 3  score: 24.9 bits;  conditional E-value: 7.6e-09
  PP-binding    3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                  l ++ ++vl+vp++e++ + ++   G+DS++a++l+ + +++ +v ++++ l+  ++lae+a+
  CCE30175.1 3268 LMDACCRVLNVPASEVNMERSFVANGGDSISAMRLVPQCRAQ-DVILSVAALLKARSLAEVAK 3329
                  78899*************************************.*****************986 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0011
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfe 56  
                   +r++ + +l+v++  i+ + ++   G+DS++a+++    +++ g+e+++  l+ 
  CCE30175.1 4824 VIRDACSHALNVSPNLINMQRSFIANGGDSISAMRVSPYCRAA-GIEVSVVSLLR 4877
                  689999999***99999*************************9.9***9998875 PP

  == domain 5  score: 42.2 bits;  conditional E-value: 2.9e-14
  PP-binding    3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                  l+el++ +lg+p+  i+ ++++f+ G+DS+ a++l+a  +++ g++++++d+f hp l++la+
  CCE30175.1 6363 LQELWSAALGIPQNNIGSNSSFFSIGGDSIGAMKLAALARDR-GLSLTVADVFRHPCLKDLAR 6424
                  799***************************************.******************97 PP

  == domain 6  score: 39.4 bits;  conditional E-value: 2.3e-13
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaela 64  
                  +l+ l+a++lgv+++ i +d+++   G+DS++a++l  + +++ g+ i+++d++ +ptl+ ++
  CCE30175.1 7443 YLQGLWASILGVDDKCIRADDSFIHIGGDSIQAMKLSKRARDQ-GFHITVADVLSYPTLSKMS 7504
                  6899***************************************.***************9986 PP

  == domain 7  score: 18.9 bits;  conditional E-value: 5.6e-07
  PP-binding    4 relvaevlgv...pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlael 63  
                   +++++vlg    p++  d ++++f+ G+D  +a +l+a ++++ g +i  +d+fe+pt ++l
  CCE30175.1 8010 GTAWRDVLGAqtvPDD--DSSATFFEVGGDADNAGQLAAHMQRR-GYAIRIEDVFENPTWSRL 8069
                  579******9543322..47888*********************.**************8776 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00011      0.27       1      76 []     520     614 ..     520     614 .. 0.69
   2 !   14.5   0.0   2.1e-05     0.054      41      76 .]    2130    2172 ..    2091    2172 .. 0.72
   3 !    8.3   0.0    0.0017       4.5      42      76 .]    3193    3227 ..    3181    3227 .. 0.85
   4 !   13.8   0.1   3.4e-05     0.087      20      76 .]    6265    6324 ..    6246    6324 .. 0.71
   5 ?    2.8   0.0     0.094   2.4e+02      44      76 .]    7373    7405 ..    7337    7405 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                    HHHHHHHSSTTEEEEEEE-----TTS...---EEEEEE--............----.........HHHHHHHHHHHHT-TTTS-SEEEE-S---B- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkG...ealvafVvlkd............gsea.........leeeLkahvrkelgpyavpkkvvfvdelpkt 72 
                    e+E+  ++h  +++ +    p+   G   ++lv++  l++            +  +         l  +L+  + ++l++y+vp++ ++v+++p+ 
     CCE30175.1 520 EIENHMARHHLIRQSVSL-YPHT--GpfsKRLVGVLSLRNvlrpsteslielD--DaqghsgteeLISTLQMLLGEALPSYMVPSTWIVVKSIPLS 610
                    677777777777777766.3444..4446777777777644444444333330..0444444455999999999********************** PP

                    TTS- CS
  AMP-binding_C  73 rsGK 76 
                     sGK
     CCE30175.1 611 PSGK 614
                    ***9 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.1e-05
                     -.......HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   41 a.......leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                             + + L ++++k+++ y+ p +   +de+p+t++GK
     CCE30175.1 2130 RghdqineMIARLSDKLAKKIPGYMIPAAYLTIDEIPMTATGK 2172
                     02233566999*******************************9 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0017
                     HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   42 leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                       e+ ++ ++  l++y+vp+k ++v+ +p++ sGK
     CCE30175.1 3193 YIEDMRSSLEMSLPSYMVPSKWIAVKHIPLNSSGK 3227
                     56888999999***********************9 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 3.4e-05
                     ----TTS---EEEEEE---..-.--HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   20 vpdevkGealvafVvlkdg..s.ealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                     +p + + + l af   ++   + +++ + L ++++ ++++y+vp++ ++++ +p+t sGK
     CCE30175.1 6265 KPKDSERRLLTAFLSVDKAsaTlDEIVDGLTEKLAVKVPAYMVPSAYILLQTMPMTPSGK 6324
                     455555677889988833322223377788888888***********************9 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.094
                     HHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   44 eeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                       L+++++++++ y+ p+  + +d++p+ ++GK
     CCE30175.1 7373 VGLNDRLASQVPGYMIPSGYIMIDKMPLLATGK 7405
                     5689999*********************99999 PP

>> Transferase  Transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   6.7e-05      0.17     136     193 ..    1326    1387 ..    1282    1415 .. 0.77
   2 !    4.7   0.0    0.0038       9.7     150     205 ..    2436    2493 ..    2407    2529 .. 0.72
   3 ?    2.5   0.0     0.018        45     113     265 ..    3439    3596 ..    3430    3604 .. 0.75
   4 !    7.9   0.0    0.0004         1     150     175 ..    3948    3973 ..    3918    4005 .. 0.83
   5 ?   -2.0   0.0      0.42   1.1e+03     116     177 ..    5002    5063 ..    4994    5157 .. 0.81
   6 !   11.6   0.0   3.1e-05      0.08     143     190 ..    5499    5544 ..    5440    5574 .. 0.79
   7 ?   -3.5   0.0       1.1   2.9e+03     151     185 ..    6589    6623 ..    6588    6651 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.7e-05
  Transferase  136 vqvTkfkcGgvalgvsvsHaiaDgaSlktfieswaelarge....kkvtvtplfarelllpr 193 
                   v +T +++  v   + +sHai DgaS +  + +wa+   ge    + + vt +f+r+l l +
   CCE30175.1 1326 VLATILGDDRVLCKIEMSHAISDGASTSITMTDWARAYSGEldieELSDVTQQFTRALSLVP 1387
                   44688888889999**********************99999666556667777877765444 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0038
  Transferase  150 vsvsHaiaDgaSlktfieswaelargekkvtvtplfarel..llprpeppsvefdqle 205 
                    ++ Ha  Dg S++ +++ + +  +g++ +++tp f+r    +l   ++ s  f + +
   CCE30175.1 2436 LTIHHALYDGWSMSLIMSRLERAYKGDVVLQQTPPFQRFVkhILSTSDEKSTRFWKGR 2493
                   689*******************************999954113333344444444444 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.018
  Transferase  113 dslenllpqlavkkegeaipllavqvTkfkcGgvalgvsvsHaiaDgaSlktfieswaelargekkvtvtplfarelllpr....peppsv..... 199 
                   ++l+ l + ++   ++e   ++++    + +G + l     H ++D  S   ++ ++ +l  g + + + p    ++l+ +         +     
   CCE30175.1 3439 EELQALASRRQLGLDIERGLVFSADLCRISSGELYLVLIAHHLVIDLVSWRIILDDLETLLTGGVLMESLPFQIWNNLQHQeaksT----Kfyqpn 3530
                   67788888888888888888999999999***********************************6666666555566665533330....233444 PP

  Transferase  200 ......efdqlelrkfsasettevkevvtkkivleklsaskleeLkkk.asdesngkpatrfesvtallWrca 265 
                          ++ l + +f+    + +++ v k++++     +k+  L+ k a++  n +p   ++ + + +W ++
   CCE30175.1 3531 vlstdgVNNDLAFWDFESRAPNSTHDHVIKSFTID----RKITSLTLKnANNALNTEP---VDLLLSAVWDAF 3596
                   46555556666666799999999999999999999....8898888772455556666...777777777665 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0004
  Transferase  150 vsvsHaiaDgaSlktfieswaelarg 175 
                   + +sH+i+DgaS   +i +wa+  +g
   CCE30175.1 3948 IEMSHTITDGASTGILIDDWAKAYQG 3973
                   789******************97665 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 0.42
  Transferase  116 enllpqlavkkegeaipllavqvTkfkcGgvalgvsvsHaiaDgaSlktfieswaelargek 177 
                   + ++ q++ + ++e  p++++   ++ +G  +l     H ++D  S   ++ ++ ++  g  
   CCE30175.1 5002 KSIITQRHQELNIERGPVFSADMFSLPSGEQILALIAHHLVVDLVSWRIVLDDLEAILCGST 5063
                   5677788888899999*******************************999999988877764 PP

  == domain 6  score: 11.6 bits;  conditional E-value: 3.1e-05
  Transferase  143 cGgvalgvsvsHaiaDgaSlktfieswaelargekkvtvtplfarell 190 
                   +  ++  + +sH+i+DgaS + ++++w +   g+  + vtplf+ ++ 
   CCE30175.1 5499 DSAIICQIEMSHTIVDGASTSILLSDWSKAYSGA--LDVTPLFETNRN 5544
                   44688899*********************99999..677777766554 PP

  == domain 7  score: -3.5 bits;  conditional E-value: 1.1
  Transferase  151 svsHaiaDgaSlktfieswaelargekkvtvtplf 185 
                   +v Ha  Dg S+  +++ + +   ge+ +t +p  
   CCE30175.1 6589 TVHHALYDGWSMPLILQRLERAYDGEVLPTPPPFQ 6623
                   699****************9999999877777654 PP

>> DUF5122  Domain of unknown function (DUF5122) beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.015        39      23      32 ..     490     499 ..     485     499 .. 0.91
   2 ?    2.5   0.0     0.071   1.8e+02      23      32 ..    2051    2060 ..    2047    2060 .. 0.93
   3 ?    2.8   0.2     0.058   1.5e+02      23      32 ..    4657    4666 ..    4653    4666 .. 0.92
   4 ?   -1.7   0.0       1.4   3.7e+03      23      32 ..    6212    6221 ..    6210    6225 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.015
     DUF5122  23 lvRLnaDGsl 32 
                 lvR+n+DG+l
  CCE30175.1 490 LVRYNSDGTL 499
                 8********8 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.071
     DUF5122   23 lvRLnaDGsl 32  
                  lvR++aDGsl
  CCE30175.1 2051 LVRYDADGSL 2060
                  8********8 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.058
     DUF5122   23 lvRLnaDGsl 32  
                  lvR+n DGsl
  CCE30175.1 4657 LVRYNRDGSL 4666
                  8********8 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.4
     DUF5122   23 lvRLnaDGsl 32  
                  lv++++DG+l
  CCE30175.1 6212 LVCYQPDGNL 6221
                  7889999986 PP

>> Period_C  Period protein 2/3C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.0   0.00062       1.6      16      95 ..    3125    3205 ..    3113    3212 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00062
    Period_C   16 lqedsrsgtgsaasgsgasasseslgsgsn.gcdtsgsgtgssetsntskyfgSiDssendhkakkkaeseeseklikyvl 95  
                   q ds sgt+s +++s   ass+    +s   c++s ++++  +ts+t      +D+  ++h a+++a  e+    + + l
  CCE30175.1 3125 IQSDSDSGTESGTNSSSYHASSSTITPSSAsYCTQSPGSSSPPDTSRTPDLQHGMDIILENHTAAVQAYIEDMRSSLEMSL 3205
                  499********999998777777776555549******************************9999999888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (8077 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 2.42u 0.32s 00:00:02.74 Elapsed: 00:00:00.60
# Mc/sec: 40759.49
//
Query:       CCE30176.1  [L=224]
Description: uncharacterized protein CPUR_04024 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-16   59.1   0.0    7.7e-16   58.9   0.0    1.2  1  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
     0.0089   16.5   0.0      0.014   15.9   0.0    1.3  1  2OG-FeII_Oxy    2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   8.6e-20   7.7e-16      70     196 .]      63     183 ..      12     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 8.6e-20
  2OG-FeII_Oxy_2  70 lspfpeallrlverlvkaagpegwspnaalvnfYrdgariglHqDkeesaleapivSlSLGasatfrfgkesree..eiiailLesGdllvmgge 162
                     ++pfp++l+ l    +        +p+++  ++Y++ga i  H+D  ++   + + SlSLG+++ ++f++   ++     ++ L+  ++l m+g+
      CCE30176.1  63 FKPFPDWLVPLFPPGET------RAPDQVCLQHYPPGAGIPPHVDTHSA--YDQLYSLSLGSPVLMQFRDGGSDApgTRVELDLPARSMLRMSGQ 149
                     56666666666655543......34555555****************77..799**************97665553367778899********** PP

  2OG-FeII_Oxy_2 163 srkay.HgvprikkdtapeleleelrtrRinlTfR 196
                     sr ++ Hg++  k+dt p   + + r++R ++TfR
      CCE30176.1 150 SRLHWtHGIRARKTDTLPDG-QVRPRGERWSITFR 183
                     ***************97664.66679********9 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.5e-06     0.014       2      98 ..      83     183 ..      82     186 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-06
                   --EEEEEE.....E-S---------EEEEEESSSEEEEEEE-.TT---EEEE.....TEEEE----TTEEEEEE-HHHHHHTTS...-S----EEE- CS
  2OG-FeII_Oxy   2 eellvlny.....ypphpdpevilglgahtdaslltillqdd.vgglevfkd.....gkwlrvppvdnslivniGdallflsng...ryksvlHrVl 84 
                   +++++++y     +pph d++       +  ++l ++ l+++ ++ ++         g+ ++++ + +s++   G++ l +++g   r +++l  ++
    CCE30176.1  83 DQVCLQHYppgagIPPHVDTH-------SAYDQLYSLSLGSPvLMQFRD--GgsdapGTRVELDLPARSMLRMSGQSRLHWTHGiraRKTDTLPDGQ 170
                   7899999*9999999999999.......444455555666665555543..1222335555555567********************9999*****9 PP

                   ---GTGSEEEEEEE CS
  2OG-FeII_Oxy  85 pvnegerRvsiayf 98 
                    v++  +R+si+++
    CCE30176.1 171 -VRPRGERWSITFR 183
                   .555555*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       199  (0.0110993); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1745.89
//
Query:       CCE30177.1  [L=1047]
Description: probable sterol glucosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-17   62.8   0.0    7.9e-17   61.6   0.0    1.7  1  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom
    6.5e-07   28.5   0.0    1.1e-06   27.8   0.0    1.2  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
     0.0016   18.8   0.0     0.0059   16.9   0.0    1.9  1  ATG_C            Autophagy-related protein C terminal domain
  ------ inclusion threshold ------
      0.036   14.2   0.2        1.6    9.0   0.0    2.5  2  UPF0767          UPF0767 family


Domain annotation for each model (and alignments):
>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   1.8e-20   7.9e-17       1     139 []     224     387 ..     224     387 .. 0.95

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 1.8e-20
                      EEEEE-SSHHHHHHHHHHHHHHHCT.T-EEEEEEETCCCHHHHHHCCT-EEEE---G..........................HCTT..CHHHH CS
  Glyco_transf_28   1 ivllggGTgGhvfPalAlakeLkke.gheVrylgtkrgleerlveeaglefepiage..........................klrrklspknl 67 
                      iv++++G++G+v+P+l + k+Lk+e gh+Vr ++t++ ++e +++++glef +++g+                          + rr    +++
       CCE30177.1 224 IVIMVVGSRGDVQPFLRIGKYLKDEfGHRVR-IATHPIFRELVEKDSGLEFFSVGGDpaelmafmvknpgmiptletvkageiGKRRDVMAEMF 316
                      89********************9644*****.***************************************************99999****** PP

                      CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHCCCCCHCCCTTHCCCCCHCTS-ECCCCCCCCC-SCCCE CS
  Glyco_transf_28  68 keilkvlkavvkakkilkeakpdavvgtggyvslpaviaaplaripviihEqnaipglanktlsrtatkvai 139
                        +++     ++  ++ +++ p +v g    + ++++ia+p++ ++++ +E+++ip    +t++ t+t +++
       CCE30177.1 317 DGFWRSCIHANEDERTNQSKPPSTVDGRH-VFIADVIIANPPSFAHIHCAEALGIPLQLVFTFPYTPTHAFP 387
                      ***************99999999996655.77789********************************99875 PP

>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.4e-10   1.1e-06     266     409 ..     492     634 ..     480     649 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.4e-10
       UDPGT 266 eefvqssGehGvvvfSlGsmvseipeekanaiAsaLakipqkvlWr..fdgkkPstLakntllvkWlPqndlLgHPktkAFvtHaGangvyEaisnGvP 362
                  +f+++ Ge   +++ +Gs+v + +++  + i +a++k + + l +  + g   +    n  + +  P   l   P++kA v H+Ga +   ++  G+P
  CCE30177.1 492 VDFLEA-GEPP-IYIGFGSIVVDDADRFTELIFEAIEKAGVRALVSrgWGGFGRDEAPDNVFMLDNTPHDWL--FPRVKACVHHGGAGTAAIGLKCGLP 586
                 556666.5554.588999999999999999999999999988776433566777777788899999998766..5************************ PP

       UDPGT 363 mvglPlFgdqrdNikrmeakgaavt.lnvkemtsedllnAlkevindk 409
                  +++P+Fgdq      + + ga+   +  k++ts+ l++ +k ++ ++
  CCE30177.1 587 TMIIPFFGDQYFWGTMVGKSGAGPDpVPYKHLTSDKLAEGIKYLLTEE 634
                 ************99999999998754999**************99987 PP

>> ATG_C  Autophagy-related protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.3e-06    0.0059       9      87 ..     849     927 ..     843     931 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.3e-06
       ATG_C   9 edlreGlqqAysslskglksaaqtilavpsevaeskgakgavkavvravPvavlrPligateavsktlqGvrnqldpea 87 
                 +++r+Gl    +++  g+  a + ++ +p + a+++ga g +k++   +  +vl+P+ +++  +   +qGv +q+++ +
  CCE30177.1 849 SGVRSGLVASRREFVYGIYDAVTGLVYLPLRGARNEGAIGLLKGAGMGIAGLVLKPASAIVGPIGFSMQGVVKQIHRRH 927
                 57999*********************************************************************97765 PP

>> UPF0767  UPF0767 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.042   1.9e+02      24      64 ..     748     788 ..     745     792 .. 0.87
   2 ?    9.0   0.0   0.00035       1.6      16      72 ..     901     959 ..     897     968 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.042
     UPF0767  24 vGviGynlEsllsdkytpyeksisekReeRlleeelnkdvt 64 
                 +G+  y+l ++ + + + + ks ++k+++R+ +e+ ++++t
  CCE30177.1 748 IGSAPYRLGKTAKRRIKHKMKSSKDKKKKRESDEKGSQELT 788
                 6778899999999999999*************998887766 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00035
     UPF0767  16 vtlPvaavvGviGynlEsllsdkytpy..eksisekReeRlleeelnkdvtqveslkek 72 
                 v  P++a+vG iG+ +  ++++ +  +  ++ i+ +R     ++ +  d+t  + l+e+
  CCE30177.1 901 VLKPASAIVGPIGFSMQGVVKQIHRRHspQNFIRRARMALGESQVQAMDTTAATALQEE 959
                 5669*************999988776644667776666655555555677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1047 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.52
# Mc/sec: 6112.58
//
Query:       CCE30178.1  [L=429]
Description: probable carboxypeptidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-86  290.1   0.1    3.2e-86  289.7   0.1    1.1  1  Peptidase_M14  Zinc carboxypeptidase
      1e-09   38.6   0.0    5.9e-09   36.2   0.0    2.1  2  Propep_M14     Carboxypeptidase activation peptide
  ------ inclusion threshold ------
      0.015   15.0   0.1      0.039   13.7   0.1    1.7  1  Mersacidin     Two-component Enterococcus faecalis cytolysin 


Domain annotation for each model (and alignments):
>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.7   0.1   5.3e-90   3.2e-86       2     288 ..     130     416 ..     129     417 .. 0.97

  Alignments for each domain:
  == domain 1  score: 289.7 bits;  conditional E-value: 5.3e-90
                    HHHHHHHHHHSTTTEEEEEEEE-TTS-EEEEEEE-SSTTSTTST-CEEEEEE-SSTT-HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHEEEEEES- CS
  Peptidase_M14   2 eayldalaarypdlvrlvsiGkSvegRplkvlkisssateaeegkpvvlidggiHarEwigsalllylleqLlsaYgedeeikellddtdiyilpv 97 
                     ++l++la++y++ +++v+ Gk+ +g p+ +l+i   a ++ e+kp+v+++g++HarEwi+s ++ y+ ++L+s+Y++d+ei+ ++d++d+y++p 
     CCE30178.1 130 LQWLNDLASQYSQNAKIVTSGKTLQGEPITGLHIFGRASSSGEKKPAVVFHGTVHAREWIASMVVEYMTHELISKYDSDAEITSFVDKYDFYMFPI 225
                    59********************************************************************************************** PP

                    STHHHHHHHHHT-TTTTST-SBCTTSSSBS--GGGSSSSSTTSS.SSBSSTTSTTBHHSSTT.SHHHHHHHHHHHH....TTEEEEEEEEESSSEE CS
  Peptidase_M14  98 lNPDGyeysstedrlwrknrsnakessceGvDlnRnFpdlwnse.gastspcsetyrgpapfsepetravlefiqk....knivlfidlhsysqvi 188
                    +N+DG++y++t+dr+wrknr+++++s c G D+nRn+p++w+ e gas++pc+e ++g a+ ++pet+a++ef++k    + ++l+id+hsysq++
     CCE30178.1 226 VNVDGFKYTQTNDRMWRKNRQTTNGSNCLGHDINRNWPYKWDVEgGASKNPCAEDFKGTAAGDAPETKALSEFLRKvkaeQGLKLYIDYHSYSQLV 321
                    *****************************************99956****************************9999*9**************** PP

                    EESHSSSS---SS-TTHHHHHHHHHHHHHHHCHTTTTEEE-EEEEEHHHHT---SS-HHHHHHHHTT-SEEEEEEESSSSSSTTS--GGGHHHHHH CS
  Peptidase_M14 189 lypygstrdeispppddeelkslarkyaealqkmvrgteylsegitngaliyeasggmddwayertgvkfeytlelrdegkqgflppasqiepeae 284
                    ++pyg++++  ++ p+d+ l+ la+ +++a+ ++++  e +++g   + +iy+asg++ d++ +  + ++++t elrd+g++gf++p++qi+p+ e
     CCE30178.1 322 MTPYGYSCT--ARAPNDDALQALAKGAVDAIYAVHN-VE-FRYG-PICSTIYQASGSSVDYVADVVQAEYTFTSELRDTGEYGFILPPEQILPASE 412
                    ********8..********************99555.44.599*.89999*********************************************9 PP

                    HHHH CS
  Peptidase_M14 285 enwe 288
                    e ++
     CCE30178.1 413 EAFA 416
                    9875 PP

>> Propep_M14  Carboxypeptidase activation peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   9.8e-13   5.9e-09       1      73 []      34     104 ..      34     104 .. 0.97
   2 ?   -0.9   0.0      0.37   2.2e+03       9      21 ..     128     140 ..     127     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 9.8e-13
  Propep_M14   1 yrvtpeteeqlelLrdLeesseldfWkppsklgepvdilVppekledfeelLeslgisyevlieDvqklideE 73 
                 +r+ + +ee+  l+++L ++  l +W+ppsk+g  +d+ Vp+++l +f + +e +++   +++eD++k+i +E
  CCE30178.1  34 FRIPVADEEDGLLMQNLVDKLGLAVWQPPSKKGAFADMQVPADQLRAFGKAMEHRNV--IIMHEDLGKSIRNE 104
                 799999************************************************998..9**********987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.37
  Propep_M14   9 eqlelLrdLeess 21 
                 ++l++L+dL++++
  CCE30178.1 128 DHLQWLNDLASQY 140
                 799******9765 PP

>> Mersacidin  Two-component Enterococcus faecalis cytolysin (EFC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   6.6e-06     0.039      12      58 ..     336     382 ..     327     386 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.6e-06
  Mersacidin  12 GkslkeLSeeElsaiyGagDvqaetTPicytlksvaAsskvCiaaiv 58 
                  ++l+ L +  + aiy    v+ ++ Pic t+  ++ ss   +a +v
  CCE30178.1 336 DDALQALAKGAVDAIYAVHNVEFRYGPICSTIYQASGSSVDYVADVV 382
                 689*******************************9999977766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3131.34
//
Query:       CCE30179.1  [L=1098]
Description: related to PMR1-Ca++-transporting P-type ATPase located in Golgi [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-42  145.0   6.2      2e-42  145.0   6.2    3.0  3  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    2.1e-39  134.9   4.5    3.1e-38  131.1   1.2    3.4  3  E1-E2_ATPase     E1-E2 ATPase
    2.1e-22   80.5   0.1    4.5e-11   43.4   0.0    2.9  2  Hydrolase        haloacid dehalogenase-like hydrolase
    3.7e-16   59.0   0.0    1.6e-15   57.0   0.0    2.1  2  Cation_ATPase    Cation transport ATPase (P-type)
    5.7e-14   51.5   0.0    1.7e-13   50.1   0.0    1.9  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    0.00051   19.9   0.1      0.001   18.8   0.1    1.5  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.098   13.1   0.0         14    6.0   0.0    2.7  2  HAD              haloacid dehalogenase-like hydrolase
        3.1    8.5   9.6         11    6.8   0.7    3.9  4  Nucleos_tra2_N   Na+ dependent nucleoside transporter N-termi


Domain annotation for each model (and alignments):
>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.44   9.9e+02     131     173 ..     166     205 ..     106     214 .. 0.67
   2 !    6.0   2.2     0.004       8.9      99     149 ..     331     380 ..     330     423 .. 0.63
   3 !  145.0   6.2   8.9e-46     2e-42       1     182 []     878    1084 ..     878    1084 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.44
  Cation_ATPase_C 131 aillslllqvlivyvpglnavfgtaplsleewlialllalvvl 173
                      ++  +l + v++ ++    +     p+s++++++a+l+ +v+l
       CCE30179.1 166 GFCSILWVGVIVFFI---CWKPLSDPPSPTNLALAILVIIVIL 205
                      333333222222222...1222244555555555555555554 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.004
  Cation_ATPase_C  99 vlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpgln 149
                      v++ i++a ++  +r +l++ + +++  ++++a++++l+l++l++++ +l+
       CCE30179.1 331 VMGRIAKATAATEERATLIQ-KEIWRFVYIIVALTICLALLILFTWIGWLR 380
                      56666666666666666777.666666667777777777777776665443 PP

  == domain 3  score: 145.0 bits;  conditional E-value: 8.9e-46
  Cation_ATPase_C    1 plplsaiqiLwinLvtDllpalaLaleppekdimkrpPr.kkkepliskkmlrri.liqgllqalvtllvffltll................ 74  
                       plpls+ ++++i ++tDl+++l+L +e++e d+++ pPr +k+++li++k+++++ l+ g++ +  + ++ffl+++                
       CCE30179.1  878 PLPLSSFLMIIICVFTDLFLSLSLIMEKEEFDLLSLPPRnHKRDHLINTKIYIQAyLFTGTMETCTAHAMFFLYYWqaagipirdlffafek 969 
                       89**************************************************************************8998888888888877 PP

  Cation_ATPase_C   75 ....lfgisekenklssnyaqtmaFitlvlsqifnalnlrsrreslfkfsglf...snkllllaillslllqvlivyvpglnavfgtaplsl 159 
                           ++g++++e  + +++aq+++F+tlv++q+ n+l++r rr s++++  ++   +n++l+l++l+sll++++++ vpg++++fgta++++
       CCE30179.1  970 ysdgFHGYTQDELTHFNSVAQSVYFVTLVILQWGNILAVRNRRLSIVQADPFTskrRNPWLVLSMLISLLIAIFVTEVPGIQSLFGTASVPI 1061
                       7776557777777777*******************************9777667779*********************************** PP

  Cation_ATPase_C  160 eewlialllalvvllvdelvKll 182 
                         w+i ++lal +l +de++Kl+
       CCE30179.1 1062 RFWFIPVPLALGILCMDEVRKLI 1084
                       *********************97 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.058   1.3e+02     108     158 ..     153     202 ..     131     212 .. 0.57
   2 !  131.1   1.2   1.4e-41   3.1e-38       2     179 ..     228     424 ..     227     425 .. 0.94
   3 ?   -0.3   0.0      0.29   6.4e+02      34      48 ..     507     521 ..     498     526 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.058
                   --HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHH.HHHHHHHH CS
  E1-E2_ATPase 108 ktplqkkldklgkvlvpvvlliallvflialllgkslaeallr.alallvaa 158
                   +  ++k+l+ l++ +  +  + ++++f+ +  l ++   + ++ ala+lv++
    CCE30179.1 153 TNYIKKILSYLFGGFCSILWVGVIVFFICWKPLSDP--PSPTNlALAILVII 202
                   333445555555555555555555555555444444..45555566666665 PP

  == domain 2  score: 131.1 bits;  conditional E-value: 1.4e-41
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S..EEE-TTTS---S-EE-..........G-TTEE-TT-EEEE-EEEEEEE CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa..evdesaLTGEslpvek..........ekgdmvfsGtvvvsgeakavVt 86 
                   llp++a v+rdg++++i+a+elv GD+v l+ g++vpaD r+++ s   ++d ++LTGE+  +e           e ++ + +Gt vv+g+ ++vV+
    CCE30179.1 228 LLPSEALVMRDGQLKKIQASELVSGDVVHLQIGNKVPADLRLISHSGdiRFDRAILTGEADEIEGvidgtddnflESRNIALMGTLVVNGSGVGVVI 324
                   789*****************************************99999**************************9********************* PP

                   E-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.......HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHH CS
  E1-E2_ATPase  87 atgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.......eallralallvaaiPcaLplavplalalgar 176
                    tg  + +g+ia+++++++++ t +qk++ +++ ++v++ +++all++++++ + +           +l ++++ +va+iP+++p+av l+l+l a+
    CCE30179.1 325 LTGPRSVMGRIAKATAATEERATLIQKEIWRFVYIIVALTICLALLILFTWIGWLRRDHfafmnvvAMLNNVMSCVVAFIPEGMPVAVALTLMLVAK 421
                   *********************************************999999986555555779996666669************************* PP

                   HHH CS
  E1-E2_ATPase 177 rla 179
                   +++
    CCE30179.1 422 KMK 424
                   996 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.29
                   T-B--SEEEEEEE-S CS
  E1-E2_ATPase  34 gdrvpaDgrivegsa 48 
                    +++p+Dgr+v+g+a
    CCE30179.1 507 TMSMPIDGRVVQGNA 521
                   5789*********97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0     2e-14   4.5e-11       1     187 [.     442     736 ..     442     742 .. 0.73
   2 !   33.7   0.0     2e-11   4.4e-08     162     210 .]     761     809 ..     751     809 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 2e-14
                 SSEEEEESBTTTBCHHHHHHH.........HHHHHCHHHHHHHHHH...HHCHHHHHHHHHHHHH............HHHHHHHHHETTTE........ CS
                 xxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx............xxxxxxxxxxxxxx........ RF
   Hydrolase   1 iktvvfDkdGTLttgepsved.........vivsaalalaaaletg...sehpigkalvaaakar............sgaltgfatfigrg........ 67 
                 +++++ Dk+GTLt+ ++ v+          v + +          +    +h   ++l  aa               +        + gr         
  CCE30179.1 442 VNVICSDKTGTLTQNRMHVHSasfidgpieVADFN--------KQAtdeKPHANIQKLLDAASSCndatfdpttmsmP--------IDGRVvqgnatda 524
                 699**********9997776644333333322222........22233578888888888888775554333333220........3333344455666 PP

                 ........................HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH....................................... CS
                 ........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................... RF
   Hydrolase  68 ........................ayaigkpewltaldippdlgaaigsaqsqgrtvall....................................... 103
                                          +   k +w+           + ++a++++ +  ++                                       
  CCE30179.1 525 avlrfaagakgndfgtaivprvfqIAFNSKNKWMLTV-------HRKSTAEKEDTSNEYQifvkgapdvllptctkywsqktnsvqvmdeaaraafksy 616
                 6666666666777778888887776666677777777.......3333333333333333555566666779999999999999999999999999999 PP

                 ........................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESE CS
                 ........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 ........................................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfda 162
                                                         +  +++++ i dp   +pe+a++v + ++ag + +++tgd   ta ++a++ G  +f+ 
  CCE30179.1 617 qdtlsrnaervivlcekthiattamgtnafsdeiainateDLTIVGILGIIDP--ARPETAHTVSECRRAGARFFMVTGDYGLTAAAIARNTG--IFSS 711
                 999999999999************************999999***********..**************************************..7766 PP

                 EEEHHCESSTTTSHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 163 viasdietvakpspegkvaaireLq 187
                 + + d+ +  k+ pe + + + e +
  CCE30179.1 712 ENDPDTIATVKAAPETFAKDLAEAR 736
                 6666666677778888777666655 PP

  == domain 2  score: 33.7 bits;  conditional E-value: 2e-11
                 EEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 162 aviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 +v ++d+ ++a   pe+k+++++eL+ + + va+ GDgvnDa+al+aA+
  CCE30179.1 761 IVCEYDEIVFARTTPEQKLRIVEELRKRDNVVAVTGDGVNDAPALRAAD 809
                 556666777*****************9999******************8 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   7.1e-19   1.6e-15       3      90 ..     498     593 ..     496     594 .. 0.94
   2 ?   -1.9   0.0       1.7   3.8e+03      44      59 ..    1011    1026 ..    1005    1034 .. 0.80

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 7.1e-19
  Cation_ATPase   3 cNsaaf...sensekdevkllGnktEsALlvlaeklgldteelreetkkvqeipFnssrKrmsvvlkle......pekkvrlyvKGApeiilkrCt 89 
                    cN+a+f   + +++ d + + Gn+t++A l++a+ + + ++   +  ++v++i Fns++K+m++v++ +      +++++ ++vKGAp+++l  Ct
     CCE30179.1 498 CNDATFdptTMSMPIDGRVVQGNATDAAVLRFAAGA-KGNDFGTAIVPRVFQIAFNSKNKWMLTVHRKStaekedTSNEYQIFVKGAPDVLLPTCT 592
                    9*****9988999999********************.777788899*********************99**************************9 PP

  Cation_ATPase  90 h 90 
                    +
     CCE30179.1 593 K 593
                    7 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
  Cation_ATPase   44 eetkkvqeipFnssrK 59  
                     ++  +vq  pF+s+r+
     CCE30179.1 1011 RRLSIVQADPFTSKRR 1026
                     567789999*****98 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   7.4e-17   1.7e-13       1      68 [.     111     177 ..     111     178 .. 0.98

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 7.4e-17
  Cation_ATPase_N   1 ehalsleevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalv 68 
                      +h+l+ ++++++L+++  +GL+++ aa+rl++ G+N+l +k+k+++++k+l+ +   +  +L+v+++v
       CCE30179.1 111 FHQLPTDQLCQQLNVSKDEGLSESSAANRLQRDGRNAL-PKPKTNYIKKILSYLFGGFCSILWVGVIV 177
                      59************************************.**************************998 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   4.7e-07     0.001     195     245 ..     781     831 ..     778     840 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.7e-07
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE-- CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtks 245
                  +++el+   + v++ GDg ND + L aa++gvA+  +s+ +++aAd v  +
   CCE30179.1 781 IVEELRKRDNVVAVTGDGVNDAPALRAADVGVAIVTGSDVAIEAADLVLLD 831
                  667788888889999*******************************99865 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0062        14      83     129 ..     669     710 ..     595     746 .. 0.83
   2 ?    4.0   0.0     0.026        59     158     188 .]     782     806 ..     760     806 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0062
         HAD  83 pklldpgalellaahraaGdrvvvvSgglrplvepllaelgadevla 129
                 p+  +p+    ++++r+aG r+ +v+g +   + +++++ g   + +
  CCE30179.1 669 PA--RPETAHTVSECRRAGARFFMVTGDYGLTAAAIARNTG---IFS 710
                 33..579999999999*********************9999...444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.026
         HAD 158 lrewlaaegegidleevvay.GDspsDlpllr 188
                 ++e         ++++vva+ GD+++D p+lr
  CCE30179.1 782 VEE-------LRKRDNVVAVtGDGVNDAPALR 806
                 444.......22345588888*********98 PP

>> Nucleos_tra2_N  Na+ dependent nucleoside transporter N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.2      0.59   1.3e+03      24      38 ..     199     213 ..     173     219 .. 0.60
   2 ?    6.8   0.7    0.0047        11      22      45 ..     354     377 ..     338     408 .. 0.77
   3 ?   -3.0   0.0       5.1   1.1e+04      42      60 ..     840     858 ..     836     861 .. 0.79
   4 ?    4.5   0.0     0.025        55      26      52 ..    1031    1057 ..    1022    1062 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.59
                     HHHHHHHHHHHHHHH CS
  Nucleos_tra2_N  24 tVigglllQfvlAlf 38 
                     +Vi+ +llQ  + +f
      CCE30179.1 199 LVIIVILLQAGFSAF 213
                     456666666666554 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0047
                     HHHHHHHHHHHHHHHHHHHTSHHH CS
  Nucleos_tra2_N  22 wrtVigglllQfvlAlfvlktpag 45 
                     wr V + ++l ++lAl++l t +g
      CCE30179.1 354 WRFVYIIVALTICLALLILFTWIG 377
                     *******************96544 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.1
                     SHHHHHHHHHHHHHHHHHH CS
  Nucleos_tra2_N  42 tpagrdvfkalsdlvqall 60 
                     + +gr vf+ l ++++ ll
      CCE30179.1 840 IRWGRLVFQNLQKVIAYLL 858
                     5789999999999988776 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.025
                      HHHHHHHHHHHHHHHTSHHHHHHHHHH CS
  Nucleos_tra2_N   26 igglllQfvlAlfvlktpagrdvfkal 52  
                      +  +l+ +++A+fv  +p  +++f  +
      CCE30179.1 1031 VLSMLISLLIAIFVTEVPGIQSLFGTA 1057
                      4567899***************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1098 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 7409.49
//
Query:       CCE30180.1  [L=568]
Description: probable asparaginyl-tRNA-synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-86  287.8   0.0    1.4e-85  287.2   0.0    1.3  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    1.9e-08   34.2   0.0    3.4e-08   33.3   0.0    1.5  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.074   12.8   0.1       0.12   12.0   0.1    1.3  1  HIN              HIN-200/IF120x domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.2   0.0   2.3e-89   1.4e-85       2     312 ..     245     561 ..     244     563 .. 0.96

  Alignments for each domain:
  == domain 1  score: 287.2 bits;  conditional E-value: 2.3e-89
                  CCHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE....-E-S-SHHHHHHHHHCTHSEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   2 eelrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeff....aLtqspqlylellivagidrvf 95 
                  + ++l+ r+l lr e+ s+vl +r  +  a+ + ++e    ++ +P L+++++e+ga+lFk        +++    +Ltqs+qlyle+++++ ++ v+
   CCE30180.1 245 HATLLDLRHLTLRGENASSVLLVRDALEYAFNQAYHEARIRKVSPPALVQTQVEGGATLFKF-------DYYgadaFLTQSSQLYLETCLPS-MGSVY 334
                  678899********************************************************.......78888889***************.***** PP

                  EEEEEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCS.CCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS......... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......... RF
  tRNA-synt_2  96 qiaraFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevless.akdiefvirrnskdlkkpfkrltykeaieklnei......... 183
                  +i ++FRaE+s t+rhl+EFt+ieae+ fi+++d+++ le li+++++ ++ ++   +  ++ +++++ +++pf r++y++ai++l ++         
   CCE30180.1 335 CIEKSFRAEKSLTRRHLSEFTHIEAELDFIDFSDLLNHLEFLICRVLELTMADPiIAGYIKNLNPEFQVPERPFMRMKYSDAIQWLIDHeipneegep 432
                  ************************************************9988762233344555667899999*************999********* PP

                  ...-SS--HHHHHHHHHHS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTE.EEEEEEEB--SHHHHHHHHHHCCHHSSSGGGGHHHHHHH CS
                  ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 184 ...gkdldkaderalvkkeknepvfvtdfPaelkpFyarkeeddkkltesyDllingv.ElvgGslRiedpeeleeklkskgldeeaeekfswyleal 277
                     g+d+ +a er +++  +n+p+f+t+fPa +k Fy++k+ +d+k+tes+D l++gv E+vgGs+Ri+++eel +  k++gld   +e ++wy +++
   CCE30180.1 433 hsfGDDIAEAAERRMTD-IINKPIFLTHFPAHIKAFYMKKDPEDSKVTESVDCLMPGVgEIVGGSMRIDEYEELLAACKREGLD---PEAYYWYFDQR 526
                  *****************.******************************************************************...*********** PP

                  HCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-X CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 278 eyGapphgGlglGldRlvmlllgsesIrdviaFPk 312
                  +yG+ phgG+g+Gl+Rl+++l++++ +rd  ++P+
   CCE30180.1 527 KYGSSPHGGYGIGLERLLAWLCKQHTVRDCCLYPR 561
                  **********************************8 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   5.7e-12   3.4e-08       1      74 [.     144     221 ..     144     223 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 5.7e-12
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET.HHHHHHHTTS-TTSEEEEEEEEEECTTS.....SEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr.eeatklaenlkeGdvvrvtGrvkrrpgg.....elelkveeie 74 
                      V+v Grv++   r+ + v+f++lrDg g +qvv+    ++t+ a +l++++  +++G+ ++ p g       el+++ ++
       CCE30180.1 144 VRVLGRVHRE--RKQKDVLFVTLRDGYGFMQVVISGkLAKTYEALTLTRETSMEIFGEMREVPAGaraplNRELHADFYK 221
                      7899******..************************666666666677************99888788887888877665 PP

>> HIN  HIN-200/IF120x domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.1e-05      0.12      95     152 ..     123     181 ..      69     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
                 HHHHS---HHHHTTS.STTEEEEEEEEEEEEEEESSEEEEEEEETTEEEEEEEECSCTG CS
         HIN  95 kkaketpkikklkkq.asgtivnGlfkvqkktvkkkniiyeikDntgkmevvvsgkltk 152
                 ++a  ++k++k     ++gt v  l  v++ +++k+ ++ +++D  g m+vv+sgkl+k
  CCE30180.1 123 DEAGDHIKLRKTDDAdSTGTRVRVLGRVHRERKQKDVLFVTLRDGYGFMQVVISGKLAK 181
                 57888888888876515689999999******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1181  (0.0658709); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 3865.95
//
Query:       CCE30181.1  [L=675]
Description: galactose oxidase precursor [GAO] [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-23   83.2   0.2    2.7e-23   82.0   0.2    1.6  1  DUF1929         Domain of unknown function (DUF1929)
    3.4e-22   78.9   0.7    7.5e-22   77.8   0.7    1.6  1  F5_F8_type_C    F5/8 type C domain
    3.7e-14   52.4  10.9    0.00033   20.8   0.0    5.7  6  Kelch_6         Kelch motif
    5.6e-13   48.3   1.2    4.5e-06   26.1   0.5    5.1  4  Kelch_1         Kelch motif
    1.7e-09   37.5   6.8     0.0017   18.3   0.1    4.4  4  Kelch_4         Galactose oxidase, central domain
    5.7e-09   35.6   7.2      0.017   15.1   0.5    6.1  6  Kelch_2         Kelch motif
    8.5e-07   28.4   0.7     0.0016   17.7   0.1    2.9  3  Glyoxal_oxid_N  Glyoxal oxidase N-terminus
     0.0044   17.0   0.4       0.27   11.3   0.0    3.7  4  Kelch_5         Kelch motif
  ------ inclusion threshold ------
       0.23   11.3   5.9       0.51   10.2   0.4    4.0  5  RCC1_2          Regulator of chromosome condensation (RCC1) r


Domain annotation for each model (and alignments):
>> DUF1929  Domain of unknown function (DUF1929)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.2   1.4e-26   2.7e-23       1      95 [.     583     672 ..     583     673 .. 0.85

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 1.4e-26
     DUF1929   1 RPkissvptevkygetftvtvsvekeaeev.kvslvrpgfvTHsvnmdqRlveLevset.gytvtvtaPpnanvapPGyymlFvvn.dgvpSvgkwVk 95 
                 RP+i+s+++    ++++++      +++ v ++slvr+g++TH+vn+dqR+v+L++++  +++++v++P++++++ PGyymlFv+n +gvpSv+k+V+
  CCE30181.1 583 RPTIRSATQ---TDRRIAIL-----TDSPVkTASLVRYGTATHTVNTDQRRVPLDLKDMgNNKYSVEVPSDPGIVLPGYYMLFVMNaNGVPSVAKTVQ 672
                 566666533...35566655.....4667779***********************9555689************************99*********7 PP

>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.7   3.8e-25   7.5e-22       2     127 .]      57     181 ..      56     181 .. 0.91

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 3.8e-25
                   EEESSCSSTTTGGGGGGSSSTTSSEEESSSSTT..EEEEEEEEEEEEEEEEEEEECSSTT.SSEEEEEEEEEESSSSSEEEEEEECEEESSSSSSSE CS
  F5_F8_type_C   2 itasseesgewpaaaaldGnkntaWsssssddk..qwlqvdLgkpkkidgvvtqgrqdgg.nayvksykiqvsddgetWttvkdekvpgnsdnstpv 95 
                   +t+ s  +++++  +a+dGn++++W+++++ ++  + + vd+g +k+++g    +rqdg+  +++ + ++ vs+d+++W+ v++ +  g+ +  t +
    CCE30181.1  57 VTCDSA-QAGYECVKAIDGNNGSFWHTAYDGSNlpHEIVVDMGLVKNVNGMSALPRQDGSnHGWIAAHEVAVSTDNKNWEVVASGAWYGGDE--TLK 150
                   566777.8888999************887777789********************************************9999966655555..7** PP

                   EEEEEEEEEEEEEEEEEEEEESSSSSEEEEEE CS
  F5_F8_type_C  96 tntfdppvkaryvrltptswnggngialraEl 127
                     +f+   +aryvrl++ts+++g+++++ aEl
    CCE30181.1 151 FANFE-TRSARYVRLRATSEATGQQWTSLAEL 181
                   *****.9*********************9996 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       6.7   1.3e+04      35      44 ..     129     138 ..     128     139 .. 0.80
   2 ?   -0.8   0.0       1.1   2.1e+03      11      25 ..     216     235 ..     206     254 .. 0.62
   3 !   20.5   0.0     2e-07   0.00041       2      50 .]     263     308 ..     262     308 .. 0.91
   4 !   11.5   0.2   0.00014      0.28       4      43 ..     311     350 ..     309     358 .. 0.80
   5 !   20.8   0.0   1.6e-07   0.00033       2      41 ..     479     524 ..     478     525 .. 0.92
   6 ?    1.6   0.1       0.2   3.9e+02       2      22 ..     533     555 ..     532     565 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.7
     Kelch_6  35 petksWeqlp 44 
                  ++k+We ++
  CCE30181.1 129 TDNKNWEVVA 138
                 6899***987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
     Kelch_6  11 g..gkiYifGGytds...sp 25 
                    gk+ +++ yt +   ++
  CCE30181.1 216 PlsGKVLVWSSYTYDnfmGT 235
                 24489999999998776633 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 2e-07
     Kelch_6   2 raghslvsvgg..kiYifGGytdsspylnkvwvydpetksWeqlpplpvpr 50 
                 +++++ +s++g  k ++ GG+++     +k  +yd+ + sW+ +p ++vpr
  CCE30181.1 263 DMFCPGISIDGagKMVVTGGNSA-----SKTTFYDFGSQSWTAGPEMNVPR 308
                 67889999995559*********.....**********************9 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00014
     Kelch_6   4 ghslvsvggkiYifGGytds.spylnkvwvydpetksWeql 43 
                 + s+ + +g+++ +GG   + ++  n  +vydp+t++W+ l
  CCE30181.1 311 QASTSLSDGRVFTIGGCWSGgWSKKNG-EVYDPKTNKWTML 350
                 567778899999997776666777787.**********976 PP

  == domain 5  score: 20.8 bits;  conditional E-value: 1.6e-07
     Kelch_6   2 raghslvs.vggkiYifGGytds.....spylnkvwvydpetksWe 41 
                 ra+hs+v+ ++g+++i GG++ +     ++++  ++ ydp t+s++
  CCE30181.1 479 RAFHSSVVlPNGQVFITGGQSYAvpfsdDTPQLTPEMYDPATDSFS 524
                 899999665**********************************986 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.2
     Kelch_6   2 raghslvs..vggkiYifGGytd 22 
                 r++hs+++   +g+++ +GG  +
  CCE30181.1 533 RVYHSVALllQDGRVFSAGGGLC 555
                 8899997775778*****99865 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.026        51      32      46 .]     291     305 ..     274     305 .. 0.92
   2 !   26.1   0.5   2.3e-09   4.5e-06       5      44 ..     312     352 ..     308     353 .. 0.89
   3 ?    1.0   0.0      0.17   3.3e+02       9      20 ..     430     441 ..     428     450 .. 0.87
   4 !   11.0   0.0   0.00012      0.24       3      43 ..     481     527 ..     479     530 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.026
                 EETTTTEEEEECCCS CS
     Kelch_1  32 yDpetntWrelpsMp 46 
                 yD+ +++W+  p+M+
  CCE30181.1 291 YDFGSQSWTAGPEMN 305
                 9*************6 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 2.3e-09
                 EEEEEETTEEEEEEEBCS.SSBEEEEEEEETTTTEEEEECC CS
     Kelch_1   5 agavvvggkiYviGGsdg.gnalssvevyDpetntWrelps 44 
                 a+    +g+++ iGG+ + g + ++ evyDp+tn+W+ l+s
  CCE30181.1 312 ASTSLSDGRVFTIGGCWSgGWSKKNGEVYDPKTNKWTMLNS 352
                 6666789***********999****************9976 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.17
                 EETTEEEEEEEB CS
     Kelch_1   9 vvggkiYviGGs 20 
                 +++gki  +GGs
  CCE30181.1 430 AIRGKILTVGGS 441
                 689********7 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00012
                 BSEEEEEETTEEEEEEEBCS......SSBEEEEEEEETTTTEEEEEC CS
     Kelch_1   3 agagavvvggkiYviGGsdg......gnalssvevyDpetntWrelp 43 
                  + ++v  +g++++ GG++        ++  + e+yDp t++++   
  CCE30181.1 481 FHSSVVLPNGQVFITGGQSYavpfsdDTPQLTPEMYDPATDSFSNQQ 527
                 57899999*********************************998765 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.73   1.4e+03      13      38 ..     275     295 ..     266     303 .. 0.61
   2 !   18.3   0.1   8.6e-07    0.0017       1      45 [.     307     352 ..     307     358 .. 0.89
   3 !   18.0   0.0   1.1e-06    0.0022       2      30 ..     479     506 ..     478     508 .. 0.85
   4 ?    1.2   0.1      0.19   3.8e+02       2      20 ..     533     552 ..     533     555 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.73
     Kelch_4  13 gtiylfGGrgedgtllndlylldlst 38 
                 g+ +++GG ++       + ++d+ +
  CCE30181.1 275 GKMVVTGGNSASK-----TTFYDFGS 295
                 6666677666654.....44555555 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 8.6e-07
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstntWrrl.g 45 
                 pR++ ++ts+ dg+++ +GG+ + g + ++  ++d +tn+W++l +
  CCE30181.1 307 PRGYQASTSLSDGRVFTIGGCWSGGWSKKNGEVYDPKTNKWTMLnS 352
                 899********************987777779**********9954 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 1.1e-06
     Kelch_4   2 RaghsatsipdgtiylfGGrgedgtllnd 30 
                 Ra+hs++++p+g ++++GG++    +++d
  CCE30181.1 479 RAFHSSVVLPNGQVFITGGQSYA-VPFSD 506
                 9*******************975.55555 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.19
     Kelch_4   2 Raghsatsi.pdgtiylfGG 20 
                 R++hs+  + +dg+++  GG
  CCE30181.1 533 RVYHSVALLlQDGRVFSAGG 552
                 999**66666*******998 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.31   6.1e+02       9      21 ..     216     233 ..     209     252 .. 0.64
   2 !    6.3   0.1    0.0049       9.7       6      46 ..     269     302 ..     265     305 .. 0.84
   3 !   15.1   0.5   8.4e-06     0.017       4      43 ..     311     348 ..     307     352 .. 0.83
   4 !    7.1   0.0    0.0028       5.6       5      21 ..     426     444 ..     424     456 .. 0.73
   5 ?    3.2   0.0     0.047        94       4      19 ..     482     497 ..     478     524 .. 0.81
   6 ?   -0.0   0.1       0.5   9.9e+02       2      19 ..     533     552 ..     533     564 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.31
     Kelch_2   9 vpggkiyvvGGa.....h 21 
                  + gk++v+  +      
  CCE30181.1 216 PLSGKVLVWSSYtydnfM 233
                 4689******99444442 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0049
     Kelch_2   6 sssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWeevt 46 
                 +s  + gk++v GG        s s+  ++d+++++W+ ++
  CCE30181.1 269 ISIDGAGKMVVTGGN-------SASKTTFYDFGSQSWTAGP 302
                 5667789********.......999999*********9666 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 8.4e-06
     Kelch_2   4 ghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWe 43 
                   s+s ++g+++ +GG     +++s     v+d+++++W+
  CCE30181.1 311 QASTSLSDGRVFTIGGC--WSGGWSKKNGEVYDPKTNKWT 348
                 3455577**********..99999999999*********8 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0028
     Kelch_2   5 hsssvpggkiyvvGGa..h 21 
                 +++  ++gki+ vGG+  +
  CCE30181.1 426 TMFDAIRGKILTVGGSpsY 444
                 578899**********542 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.047
     Kelch_2   4 ghsssvpggkiyvvGG 19 
                 ++s++ p+g++++ GG
  CCE30181.1 482 HSSVVLPNGQVFITGG 497
                 5567789********9 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 0.5
     Kelch_2   2 rgghsssvp..ggkiyvvGG 19 
                 r+ hs++ +  +g++++ GG
  CCE30181.1 533 RVYHSVALLlqDGRVFSAGG 552
                 67788887788********9 PP

>> Glyoxal_oxid_N  Glyoxal oxidase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1     8e-07    0.0016      50     134 ..     244     327 ..     233     364 .. 0.84
   2 !    7.5   0.0     0.001       2.1     109     135 ..     473     499 ..     431     548 .. 0.79
   3 ?   -0.6   0.0      0.31   6.2e+02      67      97 ..     534     564 ..     514     577 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 8e-07
  Glyoxal_oxid_N  50 eydvatnavrplkvlt...dtwcssgalladGtlvqtGGfkdgerkvrllspceecdwvelkeelaekRwyatnqiLpdgrvivvGGr 134
                     ++d atn v p  v     d +c   +++  G++v tGG +  +++   + +     w+  + e++  R y +++ L dgrv+ +GG 
      CCE30181.1 244 LWDPATNVVTPKLVDNtdhDMFCPGISIDGAGKMVVTGGNSASKTTFYDFGSQ---SWTAGP-EMNVPRGYQASTSLSDGRVFTIGGC 327
                     578888999887775323389********************999999998876...599876.6899******************995 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.001
  Glyoxal_oxid_N 109 eelaekRwyatnqiLpdgrvivvGGrr 135
                      ++a++R + ++ +Lp+g+v++ GG++
      CCE30181.1 473 GNMASRRAFHSSVVLPNGQVFITGGQS 499
                     48999********************85 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.31
  Glyoxal_oxid_N  67 twcssgalladGtlvqtGGfkdgerkvrlls 97 
                     ++ s + ll+dG++ ++GG   g+ k  +++
      CCE30181.1 534 VYHSVALLLQDGRVFSAGGGLCGDCKTNHFD 564
                     6789999999******999998888877775 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.9   3.8e+03      22      36 ..     105     120 ..     105     121 .. 0.90
   2 ?   -1.2   0.0       1.1   2.2e+03      10      25 ..     212     229 ..     209     245 .. 0.68
   3 ?    0.4   0.1      0.34   6.8e+02      15      31 ..     275     291 ..     265     293 .. 0.73
   4 !   11.3   0.0   0.00013      0.27       5      32 ..     479     505 ..     476     512 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.9
     Kelch_5  22 Gkvg.rdgsvsddvyv 36 
                 G+++ +++++s++ ++
  CCE30181.1 105 GMSAlPRQDGSNHGWI 120
                 8899999******998 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
     Kelch_5  10 avtv..sekiYvyGGkvg 25 
                 av++  s+k++v++ +++
  CCE30181.1 212 AVVDplSGKVLVWSSYTY 229
                 555555699999988876 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.34
     Kelch_5  15 ekiYvyGGkvgrdgsvs 31 
                 +k+ v+GG +++   ++
  CCE30181.1 275 GKMVVTGGNSASKTTFY 291
                 899******98555444 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00013
     Kelch_5   5 Raghcavtv.sekiYvyGGkvgrdgsvsd 32 
                 Ra h++v++ +++++++GG ++    +++
  CCE30181.1 479 RAFHSSVVLpNGQVFITGGQSY--AVPFS 505
                 88899999966**********7..55543 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.5     3e+03      17      23 ..     218     224 ..     217     226 .. 0.87
   2 ?    0.3   0.0      0.34   6.7e+02      12      27 ..     269     284 ..     261     285 .. 0.85
   3 ?   -2.6   0.0       2.6   5.2e+03      16      24 ..     317     325 ..     316     326 .. 0.83
   4 ?   -1.2   0.0      0.94   1.9e+03       9      27 ..     481     499 ..     480     500 .. 0.80
   5 ?   10.2   0.4   0.00025      0.51       9      29 ..     535     556 ..     534     557 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
      RCC1_2  17 dGeVlcW 23 
                 +G+Vl W
  CCE30181.1 218 SGKVLVW 224
                 8****** PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.34
      RCC1_2  12 caLtedGeVlcWGsNs 27 
                 ++++  G+++ +G Ns
  CCE30181.1 269 ISIDGAGKMVVTGGNS 284
                 568889*********8 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.6
      RCC1_2  16 edGeVlcWG 24 
                 +dG+V++ G
  CCE30181.1 317 SDGRVFTIG 325
                 89***9876 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.94
      RCC1_2   9 yHscaLtedGeVlcWGsNs 27 
                 +Hs +++ +G V+ +G +s
  CCE30181.1 481 FHSSVVLPNGQVFITGGQS 499
                 677777789******9887 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00025
      RCC1_2   9 yHscaLt.edGeVlcWGsNsdG 29 
                 yHs+aL+  dG+V++ G   +G
  CCE30181.1 535 YHSVALLlQDGRVFSAGGGLCG 556
                 9****6648********98888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 5212.90
//
Query:       CCE30182.1  [L=476]
Description: related to delta-12 fatty acid desaturase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-22   80.7  21.7      4e-22   79.3  21.7    1.6  1  FA_desaturase  Fatty acid desaturase
    1.3e-08   35.1   0.0      5e-08   33.2   0.0    1.9  2  DUF3474        Domain of unknown function (DUF3474)


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3  21.7   4.5e-26     4e-22       3     249 ..     136     422 ..     132     426 .. 0.79

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 4.5e-26
  FA_desaturase   3 wlalllalllglf.llgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHaytngpdeDpdlaplal........srf 89 
                    w ++   +l glf ++++  ++aHe++Hga++    ++  +nd+ g++l  +l+++y++w+ sH  HH+ t++ ++D  + p           +  
     CCE30182.1 136 WGIYT--VLQGLFgTGLW--VIAHECGHGAFS----PSTLINDVTGWVLHSALLVPYFSWKFSHSAHHKATGHMERDMVFLPRTRaqqatrlgR-- 221
                    44444..9*****66666..************....9***************************99***************9888866654441.. PP

  FA_desaturase  90 eglfry..............llrlllgllvlgwllalvlglwlrrlarrrapsksrrrk......................wrllawlllllawlg 149
                                         +  l g++++gw  +l + ++ + +  r++  +++ +k                      +++++  + l  +++
     CCE30182.1 222 -----AveelgdlceetpiyTALHLVGQQLIGWPSYLMANVTGHNFHERQREGRGKGKKngfggsvnhfdprspifearhaKYIVLSDIGLGLAIA 312
                    .....2444566677777768888888888889999999998888888777666655558999999999999999999886333333333332222 PP

  FA_desaturase 150 lwlalllllglall....lwlvplllllfllalvlnyveHyg........gdwgerqvetsasirsaswllnll.tgnlnyHieHHlfPgvpwyrL 232
                    +++ l+  +g+  +    ++++p+l ++++l+ + ++++H+         ++w   +++  +  r  + + + l +g +  H+ HH+  ++p+y+ 
     CCE30182.1 313 ALVYLGNRFGW--AnmavWYFLPYLWVNHWLVAI-TFLQHTDptlphytaEEWNFVRGAAATIDREMGFIGRHLlHGIIETHVLHHYVSSIPFYNA 405
                    22222222233..2347799**************.***********99988888888888777779********455555**************** PP

  FA_desaturase 233 pelhrrlrellpehglp 249
                    +e+++++++++++h+ +
     CCE30182.1 406 DEASEAIKPVMGKHYRS 422
                    *************9865 PP

>> DUF3474  Domain of unknown function (DUF3474)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   5.6e-12     5e-08      91     129 ..      71     109 ..       6     113 .. 0.80
   2 ?   -1.5   0.0       0.3   2.7e+03      72      95 ..     267     290 ..     230     293 .. 0.70

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 5.6e-12
     DUF3474  91 DpgaPPPfkLadiraaiPkhCWvkdpWrsmsyvvrDvvv 129
                 ++ +PP f++ dir aiPkhC+ + + +   y++rD++ 
  CCE30182.1  71 NAFTPPDFTIKDIRDAIPKHCYERSALKGYGYILRDIAC 109
                 34489*******************************986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.3
     DUF3474  72 eeekeseelngveeeeeefDpgaP 95 
                  e + + + ng + + ++fDp +P
  CCE30182.1 267 REGRGKGKKNGFGGSVNHFDPRSP 290
                 333444455666689999**9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3262.72
//
Query:       CCE30183.1  [L=127]
Description: uncharacterized protein CPUR_04031 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00035   18.7   0.0    0.00041   18.4   0.0    1.0  1  Herpes_Helicase  Helicase
    0.00049   19.9   0.2    0.00094   19.0   0.2    1.5  1  UvrD_C_2         UvrD-like helicase C-terminal domain


Domain annotation for each model (and alignments):
>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.6e-08   0.00041     721     778 ..      39      95 ..      30     102 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.6e-08
  Herpes_Helicase 721 cttvDYgissklamtiaksqGlslekvAicFgnhknlklssvYvalsRatdseflvmd 778
                      ct + + ++   a+t+ ksqG+ l++  ++ +++        Yv++sR+   + +++d
       CCE30183.1  39 CTRTQFPLTVAYAITVHKSQGTTLDRAVVDVSAK-YFSPGLSYVTVSRVKTLDGIMFD 95 
                      89999999******************99999887.9*************988877776 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2     1e-07   0.00094       2      44 ..      49      85 ..      48      89 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1e-07
    UvrD_C_2  2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTR 44
                aya+t+hk+QG   +  +v  ++ a +  +     l Y+ v+R
  CCE30183.1 49 AYAITVHKSQGTTLDRAVV--DVSAKYFSP----GLSYVTVSR 85
                8******************..666665543....466666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 958.37
//
Query:       CCE30184.1  [L=470]
Description: related to delta-12 fatty acid desaturase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-21   75.0  18.8    5.1e-20   72.4  18.8    2.0  1  FA_desaturase  Fatty acid desaturase
    2.4e-10   40.7   0.0    7.9e-10   39.1   0.0    1.8  2  DUF3474        Domain of unknown function (DUF3474)


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4  18.8   5.7e-24   5.1e-20       3     248 ..     129     414 ..     125     419 .. 0.74

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 5.7e-24
  FA_desaturase   3 wlalllalllglf.llgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHaytngpdeDpdlaplal........srf 89 
                    w ++   +l glf ++++  +++He++H a++    ++++++dl g+++  +l+++y++w+ sH  HH+ +++ ++D  + p           +  
     CCE30184.1 129 WSIYT--VLQGLFaTGLW--VIGHECGHCAFS----PSPFISDLTGWVIHSALLVPYFSWKFSHSAHHKGIGNMERDMVFLPRTReqqatrlgR-- 214
                    55555..999***66666..************....9***************************99***************9888866664441.. PP

  FA_desaturase  90 eglfry..............llrlllgllvlgwllalvlglwlrrlarrrapsksrrrk......................wrllawlllllawlg 149
                                         +  l g +++gw  +l    + + +  r++  +++ +k                      +++++  + l   l+
     CCE30184.1 215 -----AveelgdlceetpiyTALHLVGKQLIGWPSYLMTNATGHNFHERQREGRGKGKKngfgggvnhfdprspifearqaKYIVLSDIGLG--LA 303
                    .....233445556666665666666666666666555555555555444444333333788888888888888888876544444444444..33 PP

  FA_desaturase 150 lwlalllllglall....lwlvplllllfllalvlnyveHyg........gdwgerqvetsasir.saswllnlltgnln.yHieHHlfPgvpwyr 231
                    ++++++l + ++++    ++++p+l ++++l+ + ++++H+         ++w   ++ + ++i+ + + + + l++++   H++HH+  ++p+y+
     CCE30184.1 304 IAALVYLGNRFGWAnmtvWYFLPYLWVNHWLVAI-TFLQHTDptlphynrEEWNFVRG-GACTIDrDLGFIGRHLFHGIAdTHVVHHYVSRIPFYN 397
                    33333333333333458899**************.******99999988555555444.5555557*********999988*************** PP

  FA_desaturase 232 Lpelhrrlrellpehgl 248
                     +e+++++++++++h+ 
     CCE30184.1 398 ADEASEAIKPIMGKHYR 414
                    **************986 PP

>> DUF3474  Domain of unknown function (DUF3474)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   8.8e-14   7.9e-10      87     128 ..      63     101 ..       7     105 .. 0.76
   2 ?   -2.1   0.0      0.47   4.2e+03      72      95 ..     260     283 ..     244     285 .. 0.72

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 8.8e-14
     DUF3474  87 eeefDpgaPPPfkLadiraaiPkhCWvkdpWrsmsyvvrDvv 128
                 +   ++ +PP f + diraaiPkhC+ +   +s +yv+rD  
  CCE30184.1  63 G---NAFTPPDFSIKDIRAAIPKHCYERSTIKSYAYVLRDLL 101
                 2...34589*******************************86 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.47
     DUF3474  72 eeekeseelngveeeeeefDpgaP 95 
                  e + + + ng + + ++fDp +P
  CCE30184.1 260 REGRGKGKKNGFGGGVNHFDPRSP 283
                 444555566777799999***988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3576.48
//
Query:       CCE30185.1  [L=710]
Description: uncharacterized protein CPUR_04033 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-31  109.6   0.0    3.1e-31  108.7   0.0    1.5  1  RabGAP-TBC  Rab-GTPase-TBC domain
    1.9e-08   33.1   1.4    1.9e-08   33.1   1.4    1.4  2  SBE2        SBE2, cell-wall formation
  ------ inclusion threshold ------
      0.022   15.1   0.2      0.059   13.8   0.2    1.7  1  Myofilin    Myofilin


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   0.0   5.3e-35   3.1e-31       2     211 ..     443     662 ..     442     666 .. 0.87

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 5.3e-35
  RabGAP-TBC   2 elRgevWklllgyep......evkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpes..esfknkqgqnqLeriLkaysiynpevgYcqG 92 
                 + Rg vW  ++g+e        +  l++    +e   +++ + e+ +  k+++ I+kDv+    ++   ++  ++++++L  +L+ay++y++++gY+ G
  CCE30185.1 443 RSRGLVWTRAIGNELslteatFQTALTRARDLEERVRTNRADAEDMRRVKWFKHIRKDVSEKTWKDlrIFEVAGPLHDALVDVLSAYAMYRNDIGYISG 541
                 679**********99999998555566666666777777888888888999********998886674555566************************* PP

  RabGAP-TBC  93 mndivaplllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlke..egldlelfaikwfltlflrefpletvlrlwD 189
                 +n i+a+lll+  + e+aF  +++Ll++    ++yt +     ++++++ + l++k   l++hl++   ++++el++ + fl lf+ ++ ++ ++rlwD
  CCE30185.1 542 CNTIAALLLLNLPNAESAFISLANLLNRPLALSFYTADEAAQMSAYNLVMQTLSHKSAPLHEHLTKtlSDVKPELYLNDIFLSLFTGHLAIDEAARLWD 640
                 *********66669999*********************9888888899****************88788****************************** PP

  RabGAP-TBC 190 .lllegekfvllrvalailklle 211
                  +++eg+   l+r a+a+l + e
  CCE30185.1 641 vYVFEGDAL-LVRAAVALLLSRE 662
                 777899866.99****9875444 PP

>> SBE2  SBE2, cell-wall formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.37   2.2e+03     250     312 ..     114     186 ..      87     202 .. 0.58
   2 !   33.1   1.4   3.2e-12   1.9e-08     444     522 ..     341     419 ..     267     504 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.37
        SBE2 250 n.........lsnstsai......vpnaktlkkkaltpsqryrlrkeqset.alrnsikrkeklydeqeqilelqeGdi 312
                 +         +s s+ +i      +  a tl+ + l  s + r r++  +  + r+s++  e+  de e      e di
  CCE30185.1 114 DprppplnrgHSTSSLSIiqrnrsISPALTLNVRDLNLSAKPRPRRDSWQSnSRRKSLQELEHECDEDE------EDDI 186
                 144444444455555555455555555578888889999999988876554145677777777777665......4455 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 3.2e-12
        SBE2 444 Gmedlilvsenkldvvshsrpswlppkdpeekklherqiskslsvasldqleknkdreeklikdetnrqkyvllldrdi 522
                  m d + +s++k  v+s +rpswlppkdp e + h r+ +k ++ ++     ++  r ++ +  ++n    + + + di
  CCE30185.1 341 IMVDPLPISKEKEAVLSRTRPSWLPPKDPSEERRHLREYQKMMAASAKADERREAARRSRAVSKDSNADSLMHIWENDI 419
                 5889999**********************************99988877778888999999999999887777776666 PP

>> Myofilin  Myofilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   9.8e-06     0.059      49     133 ..     298     383 ..     281     394 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.8e-06
    Myofilin  49 frplsdypdlawpssksiyddpihaservkspGyrydpvsrdtyGlsprniyphny.ssdryrparyitpr.pydaekewedhldrl 133
                  +pl++    +w ss+  yd+    +ervks+     p+ r    + p +i + +   ++r+rp+  + p+ p +  ++ +++ + +
  CCE30185.1 298 RKPLASVRPNTWNSSQMSYDQTYDKKERVKSSTPELPPLRRTNIMVDPLPISKEKEaVLSRTRPSW-LPPKdPSEERRHLREYQKMM 383
                 47898887779****************************************98776589*****97.44443666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 5567.93
//
Query:       CCE30186.1  [L=539]
Description: probable CCT2-chaperonin of the TCP1 ring complex, cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   8.4e-139  463.3  12.6   9.7e-139  463.1  12.6    1.0  1  Cpn60_TCP1   TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
        0.1   12.1   0.0       0.21   11.2   0.0    1.4  1  CRM1_repeat  Chromosome region maintenance or exportin repeat
       0.12   12.6   0.1       0.34   11.1   0.1    1.7  1  DUF5442      Family of unknown function (DUF5442)


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  463.1  12.6  1.6e-142  9.7e-139       3     490 ..      44     532 ..      42     533 .. 0.97

  Alignments for each domain:
  == domain 1  score: 463.1 bits;  conditional E-value: 1.6e-142
                 HHHHCCSSTTXXEEEEEE.TTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHHH CS
  Cpn60_TCP1   3 divkttlGPkGmdKmlvn.kggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekalek 100
                 d+vk+tlGPkGmdK+l++ + g++ vTnDGatilk++ +++ aak+lv++++ qd+evGDGTt+v++La+eLl+eaekl+++++hp+tiiegy+ a ++
  CCE30186.1  44 DLVKSTLGPKGMDKILQSaSTGEIMVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVAVLAAELLREAEKLVDKKIHPQTIIEGYRIASQA 142
                 89****************9******************************************************************************** PP

                 HHHHHHHHXEEBXSC.STT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECECTTSEEESEEEESS--SSTTSSCE CS
  Cpn60_TCP1 101 aleaLkeiaveisse.ekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsledselveGlvldkgvlspdmpkk 198
                 al+aL+e av++s++ e+ r++Ll++art+lssk+ ++++++++ l++dAv+ +++   + dl+ i+++k+ gg+l++s l eG++ldk++  +  pk+
  CCE30186.1 143 ALKALEESAVDHSKNpEAFRKDLLSIARTTLSSKVLAQDRDHFATLACDAVLRLKK---SSDLSHIQIIKKAGGKLSESYLDEGFILDKKIGVN-QPKR 237
                 ********99**9998899********************************77754...48*****************************9887.5*** PP

                 EECEEEEEESS-BS--HHCC.HHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHHT-- CS
  Cpn60_TCP1 199 lenakvllldvsLeiektet.kttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlakatGat 296
                 le+ak+l+ ++s++++k ++  + +++   ++l++lekae+++++ +++ i+++g n++++ + i +  ++++ ++gi+ +++++ + +erla +tG++
  CCE30186.1 238 LEKAKILVANTSMDTDKVKIfGARMKVGATSKLAELEKAEKDKMKAKVDLIKSHGINCFINRQLIYNWPEQLFTDAGIMSIEHADFDGIERLALVTGGE 336
                 *****************9886899*************************************************************************** PP

                 EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCTSX CS
  Cpn60_TCP1 297 avssledltpeelGtakkveeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaksvs 395
                 + s+++++++ +lG+++ +ee  ig+++++ +++v+ g+++ti+lrgat++ lde+er+++dAl v+++++ +++  +GGG++e+ +ak++++ a++v+
  CCE30186.1 337 ITSTFDHPEQVKLGQCDVIEEVIIGEDTLIKFSGVAAGEACTIVLRGATEQLLDEAERSLHDALAVLSQTVIEPRTTLGGGCAEMVMAKAVEAAATRVE 435
                 *************************************************************************************************** PP

                 CCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTT..TCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXXX CS
  Cpn60_TCP1 396 geeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidves..geiidlveagvvDplkvkrqalksAteaastiLrideiikak 490
                 g++qla+  fa AL ++p +La NaGld+ +++++lr+a   g  ++g+d+ +  g+++d+ + gv++++k k+ +++sA+ea +++Lr+d+ii+a 
  CCE30186.1 436 GKKQLAVSSFAIALRQLPTILADNAGLDSGDLVSRLRKAIYDGLNTYGLDLMTpgGDVTDMRDLGVIESYKLKKAVVSSASEASELLLRVDDIIRAA 532
                 ********************************************9*****9873356*************************************986 PP

>> CRM1_repeat  Chromosome region maintenance or exportin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.4e-05      0.21       5      21 ..      85     101 ..      82     101 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.4e-05
                  HHHHHHHHHHHHHSHHH CS
  CRM1_repeat   5 aalqYLvkISeVedrEi 21 
                  aa + Lv+IS+V+d+E+
   CCE30186.1  85 AAAKVLVNISKVQDDEV 101
                  67899***********8 PP

>> DUF5442  Family of unknown function (DUF5442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   5.7e-05      0.34      24      62 ..     259     299 ..     243     309 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.7e-05
     DUF5442  24 gaiikygdise..elkksekeklkeylkdisirtvnciikr 62 
                 ga +k g  s+  el k+ek+k+k  +  i  + +nc i+r
  CCE30186.1 259 GARMKVGATSKlaELEKAEKDKMKAKVDLIKSHGINCFINR 299
                 67777777774449*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4196.57
//
Query:       CCE30187.1  [L=746]
Description: related to PRT1-translation initiation factor eIF3 subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-37  129.5   3.0    9.6e-36  123.5   0.2    4.0  3  eIF2A         Eukaryotic translation initiation factor eIF2A
     0.0002   21.1   0.0    0.00042   20.1   0.0    1.6  1  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
     0.0099   16.1   0.1      0.028   14.7   0.1    1.8  1  MetallophosC  C terminal of Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.058   3.5e+02     129     159 ..     182     214 ..     178     222 .. 0.81
   2 ?    1.9   0.0      0.03   1.8e+02     128     165 ..     222     259 ..     202     266 .. 0.75
   3 !  123.5   0.2   1.6e-39   9.6e-36       2     193 ..     405     627 ..     404     628 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.058
                 EEETT..TTEEEEEEE-TT--EEEE-TTSSEEE CS
       eIF2A 129 iwdvk..kkkkiakaeaanatlvewspdgryvl 159
                 +w+ +  + ++i +  + + t ++wsp g+y++
  CCE30187.1 182 FWNNEkdQPETIVERMHWTETFLQWSPLGTYLT 214
                 5776655678888899999999*********86 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.03
                 EEEETTTTEEEEEEE-TT--EEEE-TTSSEEEEEE-TT CS
       eIF2A 128 eiwdvkkkkkiakaeaanatlvewspdgryvlTattap 165
                 ++w  ++ +  a++ ++   lv +sp+ +y++T +  p
  CCE30187.1 222 QLWGGNSWSRQARFAHPYVNLVAFSPTEKYMVTWSNRP 259
                 56666666677778888888899999999999987666 PP

  == domain 3  score: 123.5 bits;  conditional E-value: 1.6e-39
                 EESSECEEEEEE-TTTTEEEEEEE.E--TT-CEEEEEEEEEESSSTT--EEECCEESSS.EEEEEE-TTSS-EEEEES........SSSC.EEEEEECS CS
       eIF2A   2 sffkadkvklkWnkkGtsllvlvstevdktnksyygetelyliklkkkksevvelkkegpihdvaWspkskefaviyG........kmpa.kvslfdlk 91 
                 ++f+++++kl+W++++++l+v+v+ ++ k++ks  +  e+++ik+k++++evv+  k+  ++ +aW+pk+++fa+i            p+  vs+f  +
  CCE30187.1 405 NLFSVSDAKLHWQSEAAYLCVKVD-RHSKSKKSQATTLEIFRIKEKGVPVEVVDTIKD-TVINFAWEPKGDRFAIITTtepvgvtaVPPKtAVSFFCPE 501
                 79**********************.89***************************9888.59***************97222224321233467788764 PP

                 .........CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS.-EEEEEETT..............TTEEEEEEE-TT--EEEE-TTSSEEEEEE-TTT CS
       eIF2A  92 .........vkviskleeqkrNtiffspkgklvllaGfgnla.Geleiwdvk..............kkkkiakaeaanatlvewspdgryvlTattapr 166
                           k + +l++++ N+i++sp+g++v++a + n +  +l+++d +              +++ +++a+++  t+vew+p+gr+v+T  ++++
  CCE30187.1 502 kikgpiagnFKHLRTLDKKNSNAIYWSPRGRFVVIATIHNQQsSDLDFFDLDfegdkpesdkdmtaNLQLMSTADHYGVTDVEWDPSGRFVATWASVWK 600
                 56677776699999**************************98689***986433322222222334677899*************************** PP

                 -SSS-EEEEEETTTEEEEEEE-TTEEE CS
       eIF2A 167 lrvdngfkiwsysGklvykkefdelyq 193
                 + ++ng++i+ ++G+ + ++ ++++ q
  CCE30187.1 601 HSMENGYHIYDFKGEALREEPVEKFKQ 627
                 *******************99999866 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   7.1e-08   0.00042      28      60 ..      79     111 ..      44     119 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7.1e-08
                 EEEEEETTTSEEEEEEEEESSHHHHHHHHHHHT CS
       RRM_1  28 iklvrdetgkskgfafVeFeskedAekAlealn 60 
                 i ++ de+g s++fafVeF s  +A++A ++l+
  CCE30187.1  79 IHMPMDENGDSMRFAFVEFSSAAEAAAATRQLD 111
                 678888************************998 PP

>> MetallophosC  C terminal of Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   4.7e-06     0.028      23      94 ..     603     701 ..     588     732 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.7e-06
  MetallophosC  23 tpnGYsvyevdgndikwrykaagededyqmrlyapgevkkgakk.............................akknsvvvnvwngdpgwkVevyed 90 
                    +nGY++y+++g+ ++    ++++ +++q r   p+ ++k+++k                             + ++ ++ +++ + ++ +Vev ed
    CCE30187.1 603 MENGYHIYDFKGEALR--EEPVEKFKQFQWRPRPPTLLTKDEQKqvrknlreysrvfdqedadrgasadlavvEARRRMLEEWYAWRSDVEVEVHED 697
                   68*********88754..4577777777777777777777777777778888999999999999*********99********************** PP

  MetallophosC  91 gkal 94 
                    +al
    CCE30187.1 698 RAAL 701
                   8887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 5143.11
//
Query:       CCE30188.1  [L=1271]
Description: related to protein kinase IRE1 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-43  147.0   0.1    1.6e-42  144.7   0.1    2.1  2  Ribonuc_2-5A    Ribonuclease 2-5A
    6.2e-41  140.5   0.0    3.1e-30  105.4   0.0    2.4  2  Pkinase         Protein kinase domain
    8.7e-22   77.6   0.0    1.1e-18   67.5   0.0    2.2  2  Pkinase_Tyr     Protein tyrosine kinase
    1.9e-05   24.3   1.5       0.14   12.1   0.0    3.6  3  PQQ             PQQ enzyme repeat
    0.00041   19.8   0.0    0.00079   18.8   0.0    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0023   16.8   4.1     0.0037   16.1   0.9    2.7  2  Pkinase_fungal  Fungal protein kinase
     0.0037   16.9   2.4      0.048   13.2   0.1    2.9  2  PQQ_2           PQQ-like domain
      0.007   16.3   0.1       0.03   14.2   0.1    1.9  1  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.077   12.6   6.8       0.17   11.5   6.8    1.5  1  Spt20           Spt20 family
       0.19   11.4   3.4       0.92    9.2   0.1    2.2  2  DUF4569         Domain of unknown function (DUF4569)
        1.1    7.1   1.9        1.6    6.5   1.9    1.1  1  V_ATPase_I      V-type ATPase 116kDa subunit family
        2.8    8.5  10.9       0.48   10.9   4.5    2.7  2  CFIA_Pcf11      Subunit of cleavage factor IA Pcf11


Domain annotation for each model (and alignments):
>> Ribonuc_2-5A  Ribonuclease 2-5A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.4   2.1e+03      30      54 ..     202     226 ..     194     234 .. 0.79
   2 !  144.7   0.1   1.1e-45   1.6e-42       1     127 []    1139    1266 ..    1139    1266 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
  Ribonuc_2-5A  30 easevvksdWtkkldkelvdslgky 54 
                   + +++ +++W+ ++d+ +v+s++++
    CCE30188.1 202 NDRKTGTTRWHLNIDQPMVESIHHR 226
                   566667779***********99654 PP

  == domain 2  score: 144.7 bits;  conditional E-value: 1.1e-45
  Ribonuc_2-5A    1 rlefLrdvSdrfeiekrdpesellkkLeseasevvksdWtkkldkelvdslgkyrkYkgdsvrdLLRaiRNkkeHyeelpedvkeilgelpegfl 95  
                    rl+fL+dvSd+fe+e rdp+s++l++Les+a +v+++d+ k l +e+vdslgk+rkY g++++dLLRa+RNk++Hye+l+e +k+++g++peg+l
    CCE30188.1 1139 RLSFLCDVSDHFEKECRDPPSKALQALESHAVDVTGRDFLKLLPREFVDSLGKQRKYAGHRLLDLLRALRNKRNHYEDLTEAMKRLVGSFPEGYL 1233
                    799******************************************************************************************** PP

  Ribonuc_2-5A   96 sYftkrFPkLlievyevvketl.keeevfkkyf 127 
                    s++t rFP+Ll+++++vv+++  + +++fk+y+
    CCE30188.1 1234 SFWTVRFPNLLLVCWKVVHNVDwHVTDRFKEYY 1266
                    *********************988999***997 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   2.1e-33   3.1e-30       3     170 ..     831    1009 ..     829    1020 .. 0.87
   2 !   32.6   0.0   3.3e-11     5e-08     169     264 .]    1045    1133 ..    1042    1133 .. 0.77

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 2.1e-33
                  EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase    3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslsee 98  
                  ++e+lG+Gs+G+ + +  + +g++vAvK++  +  +      +lrE ++l++++ hpn++r+y+   ++  ly+ le +   +lad++er+ ++ e 
  CCE30188.1  831 TDEHLGTGSNGTLVFGG-RFDGREVAVKRMLIQFYD-----IALRETNLLRESDdHPNVIRYYSQQIHDGFLYIALERCA-ASLADIVERRDAFFEI 920 
                  6799*******987777.69**********998665.....489************************************.56******77774444 PP

                  ......HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE..TTTE....EEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHH..T CS
     Pkinase   99 ......eakkiakqilegleylHskgiiHrDlKpeNiLid..ekge....lKitDFGlakelesssk.....ltsfvgtseYlAPEvl..k 170 
                        ++  +++qi++g+++lHs +i+HrDlKp+NiL++  +  +    l+++DFGl+k+le +++     +    gt  + APE+l  +
  CCE30188.1  921 snagkvDIPGVLYQIANGIDHLHSLRIVHRDLKPQNILVNmgK--DgrprLMVSDFGLCKKLEGGQSsfgatTGRAAGTLGWQAPELLldD 1009
                  46677788899*****************************433..35599***************999**988899***********9642 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 3.3e-11
                  HTTSCBSHHHHHHHHHHHHHH.HHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase  169 lkeneyskkvDvWslGvilye.lltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264 
                  ++ ++ ++++D++slG++++  l++g++pf    ++   e +++q    + +l      l+   +    akdl++++l+ +p++R++a+e+++hp++
  CCE30188.1 1045 VHMRRATRAIDIFSLGLVFFYvLTNGSHPFDCG-DRYMREVNIRQ---GRYVL----DPLDALGDYAWVAKDLISSMLASNPRHRPSAQEVMSHPFF 1133
                  5677889*********98765166799****33.33445566666...33444....346677788999***************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   7.1e-22   1.1e-18       2     181 ..     830    1010 ..     829    1017 .. 0.86
   2 !    7.8   0.0    0.0012       1.8     179     257 ..    1047    1129 ..    1043    1130 .. 0.81

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 7.1e-22
                   EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT. CS
  Pkinase_Tyr    2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkk. 95  
                   +++++lG G+ G+ v g        +  +VavK +  +  +      l+e++++++  +hpn+++++   ++++ l+i +e ++  +L + ++++ 
   CCE30188.1  830 NTDEHLGTGSNGTLVFGGRF-----DGREVAVKRMLIQFYDI----ALRETNLLRESdDHPNVIRYYSQQIHDGFLYIALERCAA-SLADIVERRd 915 
                   56899*******98887777.....699*****996655555....79**********************************985.8*****9996 PP

                   ...CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE....TTEEEE-STTTHEETTTSSEE..EETTSSTSGGGGS-HHHHHHSE CS
  Pkinase_Tyr   96 ...ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse....nkvvkisDfGLardiekddey..vkkeeaklpvkWmapEslkekk 181 
                      e ++    d+  + +q+A+G+++L+s ++vHrdl  +N+L++     +    +sDfGL++++e  ++    ++++a   + W apE l +  
   CCE30188.1  916 affEISNAGKVDIPGVLYQIANGIDHLHSLRIVHRDLKPQNILVNMgkdgRPRLMVSDFGLCKKLEGGQSSfgATTGRAAGTLGWQAPELLLDDD 1010
                   6666666677778889*****************************8666566999**********7666665688888999********998765 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0012
                   HSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHH....HHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr  179 ekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpee....lyelmkkcweedpeeRptfselve 257 
                    ++ t + D++s G + + ++t+g++p+   +      ++++g+ +  p ++  +     ++l+++ ++++p++Rp+ +e+++
   CCE30188.1 1047 MRRATRAIDIFSLGLVFFYVLTNGSHPFDCGDRYMREVNIRQGRYVLDPLDALGDyawvAKDLISSMLASNPRHRPSAQEVMS 1129
                   56788999********************9888888788888888888887765541111579999************999875 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   9.3e-05      0.14       4      32 ..     191     219 ..     190     222 .. 0.87
   2 !    6.8   0.1    0.0046       6.9       3      28 ..     289     314 ..     288     317 .. 0.92
   3 ?    1.9   0.1      0.16   2.4e+02       3      16 ..     392     406 ..     390     407 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-05
                 EEEETTSEEEEEETTTCCEEEEEESSSCG CS
         PQQ   4 ylgsadGylyAlDadTGkvlWrfktggpv 32 
                  l++ dG l+A D++TG+ +W+ ++++p 
  CCE30188.1 191 LLATVDGDLFANDRKTGTTRWHLNIDQPM 219
                 46799****************99988875 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0046
                 EEEEETTSEEEEEETTTCCEEEEEES CS
         PQQ   3 vylgsadGylyAlDadTGkvlWrfkt 28 
                 vy+g++ ++   +Da TG++l  f +
  CCE30188.1 289 VYVGTKKTTMITIDAGTGRILKYFGP 314
                 9********************99876 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.16
                 EEEE.ETTSEEEEEE CS
         PQQ   3 vylg.sadGylyAlD 16 
                  y++ + dG++yA+D
  CCE30188.1 392 RYITtQHDGKVYAFD 406
                 6788899*******9 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   5.3e-07   0.00079     124     170 ..     932     978 ..     903     983 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.3e-07
         Kdo 124 lkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkar 170
                 l +++  i  lh++ + H+dl ++nil++ ++++  ++++ D+  ++
  CCE30188.1 932 LYQIANGIDHLHSLRIVHRDLKPQNILVNMGKDGRPRLMVSDFGLCK 978
                 679*****************************999999999997665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.44   6.6e+02     247     274 ..     101     128 ..      37     224 .. 0.71
   2 !   16.1   0.9   2.5e-06    0.0037     310     387 ..     930    1007 ..     635    1025 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.44
  Pkinase_fungal 247 elsskaevklkksesskkvekrsvdssv 274
                     + +++++++++ ++s kk +k+++++++
      CCE30188.1 101 HNQQQQQSQQNTRRSLKKNTKNNINEKK 128
                     1333333333333444444444444433 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.5e-06
  Pkinase_fungal  310 ealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga..rertGTleFmaievlk 387 
                       +l++  +g   L+   +i+HrD   +Nil++   k+g+++ +++D+ l k+l+  +s+ ga  ++  GTl + a e+l 
      CCE30188.1  930 GVLYQIANGIDHLH-SLRIVHRDLKPQNILVN-MGKDGRPRLMVSDFGLCKKLEGGQSSFGAttGRAAGTLGWQAPELLL 1007
                      56677777888899.999************99.88999****************87777665557778888777766665 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   3.2e-05     0.048     112     170 ..     173     239 ..     156     311 .. 0.65
   2 ?   -3.6   0.0       4.6   6.9e+03     197     230 ..    1017    1051 ..     994    1053 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-05
       PQQ_2 112 lrssaspava....gdtvvvgessgklvaldpkdGkvlWerelaaprgtsels.....rvgdisgrpv 170
                 ++++++++++     d v++++ +g+l a d k+G  +W+ ++ +p  +s ++     +v+d ++rpv
  CCE30188.1 173 VSPQTARSLEdwevEDFVLLATVDGDLFANDRKTGTTRWHLNIDQPMVES-IHhrastSVVDEDYRPV 239
                 55555555556666677888888888888888888888888888888555.22244444444444444 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.6
       PQQ_2  197 wske.issinglpildgdllyvvsagelialdrat 230 
                   +++  +s +g +  +g l++ + +g++++ +rat
  CCE30188.1 1017 LNDAsAHSGTGPHSGTGPLVIQGQDGTVVHMRRAT 1051
                  33444555555555555555544456666666655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1     2e-05      0.03     158     196 ..     940     977 ..     884     979 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
                 HH--SSS-EEEE-SS-SGGGEEEC.....TTEEEEE---TT- CS
         APH 158 allpgelptvllHgDlhpgNllvd...pddgrvtGviDfeda 196
                 ++l+   + +++H+Dl+p+N+lv+   ++ +r+  v Df+++
  CCE30188.1 940 DHLH---SLRIVHRDLKPQNILVNmgkDGRPRL-MVSDFGLC 977
                 4455...79***************987666776.56677765 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   6.8   0.00011      0.17     117     169 ..      37     139 ..       6     168 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
       Spt20 117 qqqqqqqqqqqqq..................................................qqeqqqqqnekdsttteekekksksknnsskskttt 165
                  qqq+qqq q q                                                   + +qqqqq++++++ + +k++k++ ++++  s++ +
  CCE30188.1  37 LQQQKQQQRQHQHgshavvpqaglsgedisadnlywesaavkprpiiaetpnndnegltpreqYHNQQQQQSQQNTRRSLKKNTKNNINEKKDPSNQYI 135
                 2222222222222555666778889*************************************9888888999999999999999999999999999999 PP

       Spt20 166 kkpk 169
                  +p+
  CCE30188.1 136 PIPD 139
                 9997 PP

>> DUF4569  Domain of unknown function (DUF4569)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.5     0.061        91      66     141 ..      99     176 ..      36     194 .. 0.66
   2 ?    9.2   0.1   0.00062      0.92      84     157 ..     651     725 ..     618     753 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.061
     DUF4569  66 sseeenskkqqqeleeekkvaksqslllerqvsaa.leiprreqssekelyLvps..sCksicknYpDLhIaGdqvldl 141
                 + ++++++++qq+  ++ k++ ++++  +++ s++ ++ip +++    +  L        s  +++pD h a + v + 
  CCE30188.1  99 QYHNQQQQQSQQNTRRSLKKNTKNNINEKKDPSNQyIPIPDDASALA-TSALASLavRAPSPLRQWPDSHLADGPVSPQ 176
                 33334444444444444555666777776666654267887766555.3333322234555666666666666666555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00062
     DUF4569  84 kvaksqslllerqvs.aaleiprreqssekelyLvps.sCksicknY.pDLhIaGdqvldlssdstdfvdessvelv 157
                 ++  +qs++ +++ s ++l++p   q  +  +  v    C+s+      DL I+Gd+v +++ d+++ +++ss++++
  CCE30188.1 651 SEISTQSPVSKKDDSaTSLDVPGVDQPGK--VAVVSGeDCTSLQATIkKDLDIGGDDVDNNKNDERNKTTQSSDPVS 725
                 34455666666554416789999988877..66666679***9877537******************9999998776 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   1.9    0.0011       1.6     611     694 ..      17     126 ..      10     136 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0011
  V_ATPase_I 611 qvvLlllalvcvpvlllvkPlilklkhkkkkkkkekkkeeee.................................eeeeeeeeeeeeeeeeaeeeeeee 676
                 +++L+ l+++  p+l  +  l  +++++++++++++    ++                                 e         + +e+ ++++++++
  CCE30188.1  17 KKLLVALSFFLLPWLQTADALQQQKQQQRQHQHGSHAVVPQAglsgedisadnlywesaavkprpiiaetpnndnE-------GLTPREQYHNQQQQQS 108
                 5789999*****************9999999999888887779***********9999999887777654432220.......1111111112222222 PP

  V_ATPase_I 677 eeeeeeeeeeeeeeeeee 694
                 +++++++ +++++++ +e
  CCE30188.1 109 QQNTRRSLKKNTKNNINE 126
                 222222222222222222 PP

>> CFIA_Pcf11  Subunit of cleavage factor IA Pcf11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.5   0.00032      0.48      46      86 ..      98     142 ..      82     146 .. 0.54
   2 ?   -0.2   0.4      0.97   1.4e+03      40      58 ..     710     725 ..     696     781 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00032
                 XXXXXXXXXXXXXXXXXXXXXXXXXX....HHHHT-EEEE-TTTS CS
  CFIA_Pcf11  46 sknaatqassssanesseksentsls....adlekkyVvVPesst 86 
                 ++  ++q+++s++n+  + ++nt+++    +d +++y+ +P++++
  CCE30188.1  98 EQYHNQQQQQSQQNTRRSLKKNTKNNinekKDPSNQYIPIPDDAS 142
                 33333333333333333333333333334489**********986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.97
                 XXXXXXXXXXXXXXXXXXX CS
  CFIA_Pcf11  40 ktskkasknaatqassssa 58 
                 k+++ +   ++tq+s   +
  CCE30188.1 710 KNDERN---KTTQSSDPVS 725
                 111111...1111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.49
# Mc/sec: 7875.55
//
Query:       CCE30189.1  [L=807]
Description: uncharacterized protein CPUR_04037 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-06   25.7   7.8    7.6e-06   25.7   7.8    3.3  3  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
        8.9    6.3  20.6       0.12   12.2  10.4    2.6  2  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   7.8   8.4e-10   7.6e-06       3      46 ..      96     140 ..      94     144 .. 0.94
   2 ?    0.1   0.2     0.085   7.7e+02       2      13 ..     215     226 ..     214     231 .. 0.78
   3 ?    1.4   2.3     0.034     3e+02      35      45 ..     280     294 ..     261     298 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 8.4e-10
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH..TT-B-TTT--B CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekllk..rkkkCpiCrrp 46 
                 + C iC +  + + + pC+H  +C+ C  ++++  ++k C  Cr+p
  CCE30189.1  96 DVCFICANPIAYHSIAPCNHA-TCHICGLRMRAlyKTKDCAHCRTP 140
                 68*******************.*********99***********98 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.085
                 GSB-TTTSSSBS CS
  zf-C3HC4_3   2 deeCviClerpr 13 
                 +++C +C ++++
  CCE30189.1 215 KRMCDLCTRNKK 226
                 679999998876 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.034
                 H....TT-B-TTT-- CS
  zf-C3HC4_3  35 k....rkkkCpiCrr 45 
                 +    ++++C iC r
  CCE30189.1 280 EhcrmKHERCFICDR 294
                 044448899999976 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2  10.4   1.4e-05      0.12       2      40 .]      98     137 ..      97     137 .. 0.90
   2 ?   -1.3   2.5      0.23   2.1e+03       2      28 ..     265     294 ..     261     300 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilr..sLeekneCPlC 40 
                 C iC + +     ++pC+H +C  C lr  +L + + C  C
  CCE30189.1  98 CFICANPIAYH-SIAPCNHATCHICGLRmrALYKTKDCAHC 137
                 99******985.99************987799999999888 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.23
  zf-C3HC4_2   2 CpiCldmlkdpsvvt.pC..gHvfCqkCil 28 
                 C  C ++++d   +   C  +H  C  C +
  CCE30189.1 265 CGFCGERFYDDDKLYeHCrmKHERCFICDR 294
                 666777776654444467446888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1215  (0.0677673); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 5266.94
//
Query:       CCE30190.1  [L=311]
Description: uncharacterized protein CPUR_04038 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.63   10.3   4.3       0.46   10.7   0.8    2.4  2  GPR15L           G-protein coupled receptor ligand 15


Domain annotation for each model (and alignments):
>> GPR15L  G-protein coupled receptor ligand 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.8   2.6e-05      0.46      33      70 ..      23      69 ..      12      71 .. 0.65
   2 ?   -0.7   0.1     0.094   1.7e+03      51      70 ..     135     154 ..     111     157 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.6e-05
      GPR15L 33 kerklrpC..Ckrvprlkllnlk.......grhvrlCrpcklkpesr 70
                + +  r C  C++ + ++ + l+       g++ r+C pck+k+  r
  CCE30190.1 23 PLPPSRLCsgCSKRRPVTDFPLQnplgdahGERYRVCAPCKVKRDNR 69
                555566676665554444443334455555************98765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.094
      GPR15L  51 nlkgrhvrlCrpcklkpesr 70 
                 ++  r   +C  ck++++ r
  CCE30190.1 135 SKNNRILLTCVRCKVRQQNR 154
                 33344445788899888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1566  (0.0873445); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2188.98
//
Query:       CCE30191.1  [L=183]
Description: uncharacterized protein CPUR_04039 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   10.8   0.0       0.16   10.6   0.0    1.1  1  Fusion_F0  Fusion glycoprotein F0, Isavirus


Domain annotation for each model (and alignments):
>> Fusion_F0  Fusion glycoprotein F0, Isavirus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     9e-06      0.16     197     226 ..      80     109 ..      54     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9e-06
   Fusion_F0 197 gctkgirvevpspvlvsskcqevtfrvvpf 226
                  c+   rv vps v v+s+c+e t+  + +
  CCE30191.1  80 ICATAPRVRVPSDVRVASRCREHTYATLAL 109
                 588899******************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1427.46
//
Query:       CCE30192.1  [L=271]
Description: probable UAF30-subunit of RNA polymerase I transcription factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-29  100.0   0.2    1.1e-28   98.9   0.2    1.6  1  SWIB      SWIB/MDM2 domain
    8.7e-17   60.8   2.0    1.4e-16   60.1   1.1    1.9  2  DEK_C     DEK C terminal domain
    5.7e-05   23.8  12.4    0.00093   19.9   0.8    2.4  2  DTHCT     DTHCT (NUC029) region
  ------ inclusion threshold ------
        0.2   10.2   3.2       0.22   10.1   3.2    1.1  1  Macoilin  Macoilin family
          9    6.7   9.2         12    6.3   6.8    2.5  2  BRF1      Brf1-like TBP-binding domain


Domain annotation for each model (and alignments):
>> SWIB  SWIB/MDM2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.2     3e-32   1.1e-28       1      74 []     195     267 ..     195     267 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 3e-32
        SWIB   1 kpvklspeLaellgekelsrpevvkklweYIkennLqdpedkreilcDekLkklfggkdrvkffempkllkkHl 74 
                 kp++ls+ L+el+ge++lsrp+vvk+lwe+Ik+n+Lqdp+dkr+ilcD+k+ ++f++  rv++f+m+k + +Hl
  CCE30192.1 195 KPFNLSETLSELCGETQLSRPQVVKRLWEHIKANDLQDPSDKRQILCDAKMLAVFKQ-ARVDMFKMNKDIGNHL 267
                 799****************************************************87.5**************7 PP

>> DEK_C  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   1.1     4e-20   1.4e-16       4      54 .]      11      62 ..       8      62 .. 0.95
   2 ?   -2.5   0.0       1.4   5.1e+03      22      39 ..     212     230 ..     210     238 .. 0.71

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 4e-20
       DEK_C  4 eeirkaireiLreaDLdtvTkkkvReqLeeklgvd.LsekKafIkalIdeil 54
                + +++ i++iL++aDL+t+++kkvR+ Le +lg+  Lse+K++Ik lI++++
  CCE30192.1 11 QRYTEIIDDILATADLETISRKKVRQGLESRLGGKdLSEHKDAIKLLIEARF 62
                6799********************************************9875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.4
       DEK_C  22 vTkkkvReqLeeklgvd.L 39 
                 +++ +v+++L e+   + L
  CCE30192.1 212 LSRPQVVKRLWEHIKANdL 230
                 6777888888887755555 PP

>> DTHCT  DTHCT (NUC029) region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.8   2.6e-07   0.00093      30      98 ..      77     143 ..      57     145 .. 0.76
   2 !    8.2   4.9    0.0012       4.2      53      95 ..     154     191 ..     149     198 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.6e-07
       DTHCT  30 aKgrkarKRktssssedddsdpgkktskatakKkkKkaseddddfsvdldseedseseaasRerpgRak 98 
                 +    arKR   +  + d+ dp+  ts ++akKk K++ + ++d+++ l ++ +++++  +R r+ R +
  CCE30192.1  77 PSVPTARKRTN-GLVDHDETDPDPSTSPEPAKKKVKQS-SPSEDADARLAAQLQAQENSLARGRTTRGR 143
                 33334678888.66689*******************85.555558888999999999999999999987 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0012
       DTHCT  53 kktskatakKkkKkaseddddfsvdldseedseseaasRerpg 95 
                  k  k+++kK+ Kk  +dd+  s+   +e ++ s +++R+  g
  CCE30192.1 154 TKKRKTPKKKSAKKVADDDE--SA---AEGSADSVVKKRKAGG 191
                 56677999999997555555..44...3455555666665555 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.2     6e-05      0.22     279     407 ..      90     227 ..      27     245 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6e-05
    Macoilin 279 vdsklqekeymenkskskrlsksessgsesellveesvkskssssssssn........knskkasagsagssnssskkhsessksvtsssssknskkqk 369
                 vd++ ++ +  ++   +k+  k++s+++  +     + +++++s     +           ++++++  +  + s+kk  + ++s +++s+++  kk+k
  CCE30192.1  90 VDHDETDPDPSTSPEPAKKKVKQSSPSEDADARLAAQLQAQENSLARGRTtrgrtirgGGVDRTTKKRKTPKKKSAKKVADDDESAAEGSADSVVKKRK 188
                 44444444444444444444455555555555555555544444443333345566663344444445557889999999999******999999**** PP

    Macoilin 370 lpaGkssa.alkdaaenslpnnqlskkdalvrLeadikk 407
                 +++G ++  +l ++  +   ++qls+++ + rL + ik 
  CCE30192.1 189 AGGGFQKPfNLSETLSELCGETQLSRPQVVKRLWEHIKA 227
                 *999877779999999*****************999984 PP

>> BRF1  Brf1-like TBP-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.8    0.0033        12      49      92 ..     131     198 ..      78     208 .. 0.67
   2 ?   -1.5   0.0      0.89   3.2e+03      21      40 ..     218     237 ..     215     253 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0033
        BRF1  49 e....................adkkkkkkkrkrkkkekkk..gep.etaae.avkkmlekkk....lskkIN 92 
                 e                    +   ++kk++  kkk++kk    + e+aae ++ ++++k+k    ++k  N
  CCE30192.1 131 EnslargrttrgrtirgggvdR---TTKKRKTPKKKSAKKvaD-DdESAAEgSADSVVKKRKagggFQKPFN 198
                 1345566667777888775432...344444344444444323.2578888699999999986777777666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.89
        BRF1  21 KeriWvelnkeyLeeqeekr 40 
                  +r+W+++ +  L++   kr
  CCE30192.1 218 VKRLWEHIKANDLQDPSDKR 237
                 57999999998888655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2027.78
//
Query:       CCE30193.1  [L=513]
Description: uncharacterized protein CPUR_04041 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-16   58.0   0.3      6e-15   55.3   0.1    2.1  2  DUF604    Protein of unknown function, DUF604
    8.5e-05   22.1   0.0    0.00088   18.8   0.0    2.1  2  Fringe    Fringe-like


Domain annotation for each model (and alignments):
>> DUF604  Protein of unknown function, DUF604
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.1   6.7e-19     6e-15       6      92 ..     287     370 ..     282     378 .. 0.90
   2 ?   -0.5   0.0     0.076   6.8e+02     140     166 ..     405     431 ..     393     443 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 6.7e-19
      DUF604   6 syemafGGgGfaiSyplakaLakvldeClerYpklygsddriqaClaelGvpltkekGfHqvDlrgdllGlLaahplaplvslHHld 92 
                    ma+GGgG+ +S+pl k L+  +d+Cl+  +++   d  ++ C+   G ++t+ kG+Hq+D++gd+ G+  +      +slHH +
  CCE30193.1 287 HGYMAYGGGGVFLSVPLLKLLEPHVDSCLR-ESRIREGDGMLKFCVEKTGTNFTEVKGLHQLDFKGDMGGFYESGKW--HLSLHHWK 370
                 445**************************6.5889999*********************************988765..589**976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.076
      DUF604 140 wGyavqvyekivlarelekplrtfkew 166
                  Gy++  y++ +++ +l+++++tf+e 
  CCE30193.1 405 NGYSIATYKSGTANLQLDRMESTFTES 431
                 6***********************875 PP

>> Fringe  Fringe-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.035   3.1e+02      86     124 ..     178     216 ..     161     228 .. 0.80
   2 !   18.8   0.0   9.8e-08   0.00088      84     207 ..     238     346 ..     221     350 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.035
      Fringe  86 kkkWfchvDDDnylnveaLlklLskynhtqdvylGkpsl 124
                  k  ++ +  D  l+ +++ kl  k+n++   ++G +  
  CCE30193.1 178 TKARLVAIVTDQHLSKRQMAKLTGKFNQSGINFIGTRPR 216
                 5555677778999******************99998755 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 9.8e-08
      Fringe  84 eskkkWfchvDDDnyl.nveaLlklLskynhtqdvylGkpsldrpieaterteenkkkkvkfwfatGGaGfclsralalklaPwasggrfvstsekirl 181
                 e ++kW +++DDD++  ++  + ++ +k n++   y+G  s ++ +              ++ +a GG+G+ ls  l + l+P+  ++  +s    ir 
  CCE30193.1 238 EPDTKWGVIIDDDTFFpSLFPVAQIFDKQNASLPAYVGGLSENKDAVS----------FHGY-MAYGGGGVFLSVPLLKLLEPHVDSCLRESR---IR- 321
                 5678**********9745677778888888888889998876665444..........2334.678*****************9987755444...55. PP

      Fringe 182 pdDctlGfiieelLgvslthsslfHs 207
                   D +l f++e+  g + t+++ +H+
  CCE30193.1 322 EGDGMLKFCVEK-TGTNFTEVKGLHQ 346
                 677889*****9.9***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3763.61
//
Query:       CCE30194.1  [L=245]
Description: related to endoglucanase I precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-40  137.9   6.4    5.3e-40  137.7   6.4    1.0  1  Glyco_hydro_12  Glycosyl hydrolase family 12


Domain annotation for each model (and alignments):
>> Glyco_hydro_12  Glycosyl hydrolase family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   6.4   2.9e-44   5.3e-40       2     213 ..      39     244 ..      38     245 .] 0.87

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 2.9e-44
                     EEEEEE--TTE.EEEEEEEEEEE-SSEEEEEEEEEEEEESSGB--EEEEE-BGGGTB--TT----EE.GGGEEEEEEEEEEEEE-TT--EEEEEE CS
  Glyco_hydro_12   2 pysvennlWgs.kegsgsvavkvdgekitssgasahtswkekgypevygGeksvksysnsgvalpvk.vssvssiptevsfsiddtnvkanvayd 94 
                     py++ +n Wg+ ++ sg ++  +       +  ++ tsw ++      gG  +vksysn g+a  ++ + +v+sip++ s+ +++ n+ a+vayd
      CCE30194.1  39 PYTIYHNNWGAaSASSGKQCTSFS--SRNGASVAWSTSWSWQ------GGPSNVKSYSNVGLAHVNRkLTDVKSIPSKWSWTYTGQNIVADVAYD 125
                     8********972567899**8886..4445566899******......*************9855444*************************** PP

                     EEEESSTT-S--TT-EEEEEEEE.EES---SSE....EEEEEEETTEEEEEEE.EESSSEEEEEEESS--EEEEEEHHHHHHHHH-SS---GGGS CS
  Glyco_hydro_12  95 lflaaeknqvtsigdvElmiWlarygniqPiGe....kietavvgGetWelwlGaeaeqdvlsFvakspikgysfDvkdFldaltsargldaedl 185
                     l+la+ +      + +E+miWla  g  +Pi +    +i+  ++ G tW+l+ G ++++ v+sFva+s+i+++ +D++ F+++l + +g++    
      CCE30194.1 126 LWLAPSAGA---DNTYEIMIWLAALGGAGPISQtgstPIANPQIAGTTWKLFKGPNGSTTVFSFVAPSNIENFDGDLNLFFKYLVESQGVAN-TN 216
                     *****9877...799**********99999965111246688999*******************************************9975.56 PP

                     EE-EEEEE--B..--TT-EEEEEEEEEE CS
  Glyco_hydro_12 186 ylislqiGtEpftgspetlkvenfsasv 213
                      +++lq+GtEpf gs + ++ +  s++v
      CCE30194.1 217 VITALQAGTEPFIGSNAVFNSPVCSIEV 244
                     79**************998877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1925.76
//
Query:       CCE30195.1  [L=533]
Description: probable phenol 2-monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-73  246.5   0.0    6.7e-73  245.9   0.0    1.2  1  FAD_binding_3   FAD binding domain
    5.1e-06   26.3   0.6    4.3e-05   23.3   0.1    2.5  3  DAO             FAD dependent oxidoreductase
    3.4e-05   24.0   0.1    0.00011   22.4   0.1    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00015   21.1   0.0    0.00033   20.0   0.0    1.4  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00033   19.8   0.3    0.00088   18.4   0.1    1.8  2  Lycopene_cycl   Lycopene cyclase protein
    0.00047   19.5   0.1    0.00077   18.8   0.1    1.3  1  Thi4            Thi4 family
    0.00057   18.7   0.0    0.00085   18.1   0.0    1.2  1  HI0933_like     HI0933-like protein
     0.0015   17.7   0.6     0.0029   16.8   0.6    1.4  1  FAD_binding_2   FAD binding domain
     0.0021   18.5   0.0      0.054   14.0   0.0    2.4  2  XdhC_C          XdhC Rossmann domain
     0.0021   18.6   0.1     0.0064   17.0   0.1    1.9  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0029   16.9   0.0     0.0053   16.0   0.0    1.4  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.028   13.5   0.0       0.32   10.0   0.0    2.0  2  SE              Squalene epoxidase
       0.04   13.6   0.0      0.068   12.8   0.0    1.3  1  ApbA            Ketopantoate reductase PanE/ApbA
      0.049   12.9   0.0       0.08   12.2   0.0    1.3  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.051   12.7   0.3      0.078   12.1   0.3    1.2  1  GIDA            Glucose inhibited division protein A
      0.064   12.6   0.0        0.9    8.9   0.0    2.2  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
        0.2   11.2   0.0       0.32   10.5   0.0    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.9   0.0   6.4e-76   6.7e-73       1     347 [.       3     365 ..       3     367 .. 0.81

  Alignments for each domain:
  == domain 1  score: 245.9 bits;  conditional E-value: 6.4e-76
                    EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHT..T-HHHHHHHSEECCCCEEEEEEECCCC.CEEEEEHHCH CS
  FAD_binding_3   1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrql..Gledrilaegapnelmgealynelsdt.pkaradlele 93 
                    etdVlIVGaGp+Gl+lal Ls+ G++v+l++k ++++  +ra +++ rt+el++ql   l+d++ +++ p    ++ ++++ +   + + +d+  +
     CCE30195.1   3 ETDVLIVGAGPTGLVLALWLSKLGIKVRLIDKAAQAATSTRAIVVQARTLELYDQLdpTLADELCENAHPIGALNIWVRGT-R-AfRLPIIDVGKR 96 
                    69*****************************************************9556*********8888888888888.3.358888888855 PP

                    .HCST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECC....CCCCCEEE..........ECCTTEEEEEEEEEEEE--GTT-HHHHHHT CS
  FAD_binding_3  94 .sspervtvypqteleriLvehaeerg.lqvrfktevesleqde....egvtaevr..........dketgeeetvrakYlvGaDGgrStvrktlg 173
                     +    +++++q++ e++L++++ + + + ++ ++e++ + q++     g ++ev+           ++++ +et++akY++G+DG +Stvrk+ +
     CCE30195.1  97 lTPRAPTQTISQHQHEKLLADRLLRYYgVPIELQKELLDFSQETpdkeAGGDTEVTeprpgpvtalIQTSQGTETIHAKYIAGCDGSHSTVRKKFK 192
                    15555567899***********999888********99888875111133445555777777777744445557*******************988 PP

                    GGEEEEEEEEE..EEEEEEEEEC-SCCCTTCCEEEEECCTTEEEEEECCE.TEEEEEEEEECCE-GGGS.CCCHHHHHHHHHHHHHHTTSSCEE.E CS
  FAD_binding_3 174 iefegeetvye..agvldvlfdadlsdiveplvlilsaesrgvmviPlen.tlerfyvqvearaekeer.sekfteeevkarlreivgektldv.e 264
                    ++++ ++++y+  + v+d+    ++    +++v i  ++s++++v Pl   +  r +  +e +++++++  +  t ++v +++    +   l+v +
     CCE30195.1 193 LDIPFPGGTYDrlFYVADIRGGGPVM---DGQVHICLDKSDFLAVFPLAGqGHGRLLGTIEDTNTDQNTpHKSLTFDDVGDEAL---QRMGLQVnK 282
                    88555555554227777777666666...56788999*************6666666666555544444244455555555555...555566669 PP

                    EEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHH CS
  FAD_binding_3 265 ieevsawtvaqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvd 347
                    ++++s++++++rvae++r++r fl GDAaH+h+P+gGqG+Nt+i DavnLawk+a+vl+G+A+e++LdtY+eerr +a+ +v 
     CCE30195.1 283 VTWFSSYRLHHRVAENFRHNRAFLLGDAAHVHSPVGGQGMNTGIGDAVNLAWKMASVLRGTASEAILDTYQEERRHFAESLVA 365
                    9******************************************************************************9986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   4.1e-08   4.3e-05       1      39 [.       5      43 ..       5      81 .. 0.84
   2 ?    0.1   0.0      0.44   4.7e+02      34      78 ..     424     481 ..     417     494 .. 0.81
   3 ?   -3.2   0.0       4.5   4.7e+03      15      29 ..     500     516 ..     500     520 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.1e-08
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgr 39
                dv+i+G+G +Gl  A++L++ g  V l++k+ +a+  +S r
  CCE30195.1  5 DVLIVGAGPTGLVLALWLSKLGikVRLIDKAAQAA--TSTR 43
                8******************************5554..5544 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.44
                 SSGGGSSEEEEESSSSTHHSTH..............HHHHHHHHHHHHHHHHHHHHSST CS
         DAO  34 sgaSgrnsgllhsglrylpeas..............elarlslealeelreleeelgid 78 
                 s +Sg++s+++++g r lp+                 ++ ++ +a+e l ++++e++++
  CCE30195.1 424 SCSSGGTSRVVRAGER-LPWVKtadgvdnftslnleWQVHVYGRAHETLLAWCKEHEMP 481
                 568**********998.999777999999999998844588889999999999998765 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.5
                 HHHHHHT.T.EEEEESS CS
         DAO  15 AyeLarr.g.Vtllekg 29 
                 A++L r  g V+l+e+g
  CCE30195.1 500 ALYLVRPdGhVALVERG 516
                 8999765459*****98 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1     1e-07   0.00011       1      31 [.       8      38 ..       8      57 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31
                   IvGaG +Glv+A  L+k g++v l++k+ + 
     CCE30195.1  8 IVGAGPTGLVLALWLSKLGIKVRLIDKAAQA 38
                   9**************************9876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.1e-07   0.00033     144     177 ..       5      38 ..       2      58 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.1e-07
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrl 177
                  ++++vG+G++G++lA  l+klg +v l++ + + 
   CCE30195.1   5 DVLIVGAGPTGLVLALWLSKLGIKVRLIDKAAQA 38 
                  5777888888888888888888877777776554 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   8.4e-07   0.00088       1      36 [.       5      38 ..       5      59 .. 0.87
   2 ?   -2.6   0.0         2   2.1e+03      54      87 ..     326     358 ..     298     377 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.4e-07
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   Dv+++GaGp gl lA  l  +k g+kv li+ +++ 
     CCE30195.1  5 DVLIVGAGPTGLVLALWL--SKLGIKVRLIDKAAQA 38
                   9*****************..**********988776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2
  Lycopene_cycl  54 leecvehsWsgtivylddgkkillgraYgrvssk 87 
                    + ++v+  W+++ v     ++  l+ +Y+  +++
     CCE30195.1 326 IGDAVNLAWKMASVLRGTASEAILD-TYQEERRH 358
                    4455555555555544444444444.45544433 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   7.3e-07   0.00077      16      49 ..       2      34 ..       1      42 [. 0.92

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.3e-07
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailer 49
                ae+Dv+ivGaG++GL  a  l+k  ++kv ++++
  CCE30195.1  2 AETDVLIVGAGPTGLVLALWLSKL-GIKVRLIDK 34
                89*********************9.*****9987 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   8.1e-07   0.00085       2      35 ..       5      38 ..       4      43 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 8.1e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakkl 35
                 dv+++G+G+ Gl  A+ ++k g +V l++ka ++
   CCE30195.1  5 DVLIVGAGPTGLVLALWLSKLGIKVRLIDKAAQA 38
                 89****************************9886 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.6   2.7e-06    0.0029       1      35 [.       5      39 ..       5      46 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.7e-06
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   Dv+++G+G  GL+ Al +++ G kv +++k+ +  
     CCE30195.1  5 DVLIVGAGPTGLVLALWLSKLGIKVRLIDKAAQAA 39
                   9*****************************98844 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   5.1e-05     0.054       1      40 [.       6      45 ..       6     120 .. 0.83
   2 ?    2.1   0.0      0.25   2.6e+02      50     107 ..     263     319 ..     217     324 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.1e-05
                EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-T CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpreefatkerfp 40
                ++i+Gag+ +  la  +++lg++v ++d+ +++at +r+ 
  CCE30195.1  6 VLIVGAGPTGLVLALWLSKLGIKVRLIDKAAQAATSTRAI 45
                68*****************************988776655 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.25
                 --S-HHHHHHHHHHHSSS--SEEEESS-HHHHHHHCTTS.--........TTEESS-S- CS
      XdhC_C  50 lthdhklDaealeaalrkkaayigllGSrkkaarrlerlraa.glseeelarlhaPiGl 107
                 lt d   D+++ +  l  +++ +    S + ++r+ e++r++  +   + a++h+P+G 
  CCE30195.1 263 LTFDDVGDEALQRMGL--QVNKVTWFSSYRLHHRVAENFRHNrAFLLGDAAHVHSPVGG 319
                 5666666666666666..78888999999999999999999988899999*******95 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1     6e-06    0.0064       2      33 ..       6      37 ..       5      52 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6e-06
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdk 33
                v++vG+G +gl lA  l++lg kV +++ + +
  CCE30195.1  6 VLIVGAGPTGLVLALWLSKLGIKVRLIDKAAQ 37
                89*************************98766 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     5e-06    0.0053       1      37 [.       7      43 ..       7      59 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg.nignsiy 37
                 +I+GaGP Gl  a+ l k+g+ ++  ++k+ ++ +s +
   CCE30195.1  7 LIVGAGPTGLVLALWLSKLGI-KVRLIDKAaQAATSTR 43
                 6********************.799****966666655 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.16   1.7e+02       2      20 ..     174     192 ..     173     198 .. 0.83
   2 ?   10.0   0.0    0.0003      0.32     125     168 ..     297     340 ..     277     386 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.16
          SE   2 AkltvvcDGifsklRkels 20 
                 Ak    cDG +s +Rk+++
  CCE30195.1 174 AKYIAGCDGSHSTVRKKFK 192
                 666678**********986 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0003
          SE 125 sknekkGlillGDalnmRHPltggGmtvalnDivllskllkple 168
                 ++ +++ + llGDa  +  P+ g Gm  ++ D+v l+  +  + 
  CCE30195.1 297 ENFRHNRAFLLGDAAHVHSPVGGQGMNTGIGDAVNLAWKMASVL 340
                 555677789************************99988777763 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.5e-05     0.068       1      43 [.       6      47 ..       6      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.5e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrl 43
                ++i+GaG  G +la  L+k g +v li++ +  +a +++ + +
  CCE30195.1  6 VLIVGAGPTGLVLALWLSKLGIKVRLIDKAA-QAATSTRAIVV 47
                68***************************99.55566665555 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.5e-05      0.08      29     101 ..       4      78 ..       1      89 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.5e-05
                  -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH..TTTCECEEHCHHHHHHHHHHHH-SEEEE---B CS
  AlaDh_PNT_C  29 akvlviGgGvaGlqAiatakglgakVtvlDvrparleqles..lgakfvevlksqeellaeavkeadvvigtvli 101
                    vl++G+G  Gl  +   ++lg kV+++D+ ++++   ++  ++a+++e++ +   +la+++ e    ig+  i
   CCE30195.1   4 TDVLIVGAGPTGLVLALWLSKLGIKVRLIDKAAQAATSTRAivVQARTLELYDQLDPTLADELCENAHPIGALNI 78 
                  689********************************9999999999999999988888888888777777777665 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   7.4e-05     0.078       1      29 [.       5      37 ..       5      51 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.4e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE....E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi....t 29
                dv ++G+G  G+  Al +++lG+kv Li    +
  CCE30195.1  5 DVLIVGAGPTGLVLALWLSKLGIKVRLIdkaaQ 37
                799*************************55431 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00085       0.9      36      83 ..       3      50 ..       1      59 [. 0.81
   2 ?    1.0   0.0      0.22   2.3e+02     125     166 ..     323     364 ..     318     373 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00085
                  TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC CS
  2-Hacid_dh_C 36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv 83
                  +  v i+G+G  G  +a  l+++g+kv  +d+  ++ +++++  v+  
    CCE30195.1  3 ETDVLIVGAGPTGLVLALWLSKLGIKVRLIDKAAQAATSTRAIVVQAR 50
                  56799****************************997776655555444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.22
                   ESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHH CS
  2-Hacid_dh_C 125 NtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspll 166
                   Nt+ G+ v+ +  ++ + +g+ + a lD+++ee  +  ++l+
    CCE30195.1 323 NTGIGDAVNLAWKMASVLRGTASEAILDTYQEERRHFAESLV 364
                   888888888887788888999************876555554 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0003      0.32       3      35 ..       6      38 ..       4      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0003
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S-HHH CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDideek 35
                    + ++G+G  Glv a+ l+++g++v ++D+ +++
      CCE30195.1  6 VLIVGAGPTGLVLALWLSKLGIKVRLIDKAAQA 38
                    789*************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 4175.69
//
Query:       CCE30196.1  [L=635]
Description: related to myo-inositol transport protein ITR1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-84  282.1  22.5    1.1e-83  281.7  22.5    1.1  1  Sugar_tr  Sugar (and other) transporter
    9.3e-18   64.3  47.7    2.4e-16   59.6  28.4    2.2  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.7  22.5   1.2e-87   1.1e-83       6     452 .]     125     587 ..     113     587 .. 0.89

  Alignments for each domain:
  == domain 1  score: 281.7 bits;  conditional E-value: 1.2e-87
                 HHHHHHHHHH.HHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHT.HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS- CS
    Sugar_tr   6 alggllfgYd.tgvigafltllkfaknfglsksksskeessvlsglivsi.flvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsv 102
                 a+g   +g+d tg  ga l++++   +fgl+ + +++      +gli si fl  ++iG++++ +l +++GR+  +  +a+++ +  + +a+ak   s+
  CCE30196.1 125 AIGAATQGWDqTGANGANLSFPE---EFGLTGEGKNE----WIVGLINSIiFLTAGLIGAFIVDPLNHYLGRRGEIFLTAACLTATPIGSAFAK---SW 213
                 56667777774566666666666...77777776533....467888776266789**************************************...** PP

                 TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHT CS
    Sugar_tr 103 evlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvek 201
                 + l+++R+++Gig+G+ +++vP+y +E+Ap++ Rgalv+++ql++++Gi++++  ++++++t++   wr+ +g++++p+l+l+i+++f+PESPr+l+++
  CCE30196.1 214 QGLFAARFVMGIGIGAKNATVPIYSAEMAPARTRGALVMFWQLWVVAGIFLGFAANVIVKDTGK-IAWRLQFGSAFIPSLILMIGIFFCPESPRWLMKN 311
                 ****************************************************************.9********************************* PP

                 T-HHHHHHHHHHHHHC...HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH......HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHH CS
    Sugar_tr 202 gkeeeakevlaklrge...edadrelaeekdsleaeqeeekaswkellsskt...vrqrlligvvlqifqqltGinaimyysptifenlglsks..llv 292
                 +k++ a +++ +lr     + +d +    + + e+++++++++ +++++ +    +r++   +  ++i+qq++Gin+i +ys++ife++g+sk+  l++
  CCE30196.1 312 NKYDMAFASMLRLRAHpiiAARDFYYSHVIYEVEKKETANSTYFSRMWDCFRiprIRRANYGASTVMIAQQMCGINIISFYSSSIFESVGYSKTeaLYA 410
                 ************999988878888888888888888777777777777777676567777777788999****************************** PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH.......HHHHTTSS.....................CHHHHH.HHHHHHHHHHTTT CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.....ivalllvaks..................kaasivaiv.fialfialfalgw 367
                 ++++g+v++vat+  +fl+d  GRRtl ++ +  m+i+++  g     +       +                    +a i+ +v f++lf+++++lg 
  CCE30196.1 411 SLGYGAVQVVATIPTLFLIDTKGRRTLTMITFPLMCIFLLAAGlsllpN-------GAyhisptdldqnpagdfrsRGARIGPVVlFVYLFTICYSLGE 502
                 **************************************99999555444.......4444555559999*****997777775542899********** PP

                 THHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 368 gpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 gpv + +++E+fp+  R  ++a av++n+++  + +l+fp +   +++++ f ++agl++++ +++f fv etk +tleei+++f
  CCE30196.1 503 GPVAFQYSAEVFPTIQREQGMAWAVCINNTFAGILGLTFPRMKTVMTATGAFGFYAGLNLIAWLMIFCFVRETKQLTLEEIDQVF 587
                 **********************************************************************************998 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6  28.4   2.7e-20   2.4e-16       3     352 ..     126     538 ..     124     539 .. 0.77
   2 !   19.1  11.3   5.7e-08   0.00051       9     186 ..     383     584 ..     373     623 .. 0.71

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 2.7e-20
       MFS_1   3 laaflsalarsilgpalplalaedlgispse.....igllltlyal.gaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslw.lllvlrv 93 
                 ++a+  +++ + ++ a      e++g+++       +gl+ ++ +l + +++++++ +l   +Grr  ++l+++ l+a   +  +f + +w  l+++r+
  CCE30196.1 126 IGAATQGWDQTGANGANL-SFPEEFGLTGEGknewiVGLINSIIFLtAGLIGAFIVDPLNHYLGRRGeIFLTAACLTATP-IGSAF-AKSWqGLFAARF 221
                 556666666666666665.5568888777777777788888886662669999999************************.66668.77788******* PP

       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkeee. 188
                 ++G+g ga ++++ ++ a+++p + rg  + ++++ + +G+ lg  ++ +++   g   Wr+ f  + i sl++++     +++++++r+  +  +   
  CCE30196.1 222 VMGIGIGAKNATVPIYSAEMAPARTRGALVMFWQLWVVAGIFLG-FAANVIVKDTGkiaWRLQFGSAFIPSLILMI---GIFFCPESPRWLMKNNKYDm 316
                 ***********************************999999999.888999989999*****************99...77777777777777777777 PP

       MFS_1 189 ..............................kgtgpaplvp.awkallkdpvlw....illialllfffgfsglltllplylqevlgls...glllagll 249
                                               k t+++  ++  w  ++ ++       +  ++++  ++g++++++++ ++  e  g+s   + l+a+l 
  CCE30196.1 317 afasmlrlrahpiiaardfyyshviyevekKETANSTYFSrMWDCFRIPRIRRanygASTVMIAQQMCGINIISFYSSSI-FESVGYSkteA-LYASLG 413
                 7****9999999999999999999877666444444444488888888885533446777777777999999*******7.*******7642.444444 PP

       MFS_1 250 lallalvgailallagrlsdrlgrrrrlllallllllaalglallavt...................ssavllll..........vlvliGfglgfv.f 318
                 ++++++v+    + + +l+d  grr+ ++++++l+ +++l+  l  ++                                     +++l+++++++   
  CCE30196.1 414 YGAVQVVA---TIPTLFLIDTKGRRTLTMITFPLMCIFLLAAGLSLLPngayhisptdldqnpagdfR------SrgarigpvvlFVYLFTICYSLGeG 503
                 66666666...999999999878777777776666655555555555544666666666555555551......0555555543355558899999988 PP

       MFS_1 319 psllalasdlappeeagtasglfn.tagslggalg 352
                 p ++ + ++++p+ ++ + ++++  + ++++g+lg
  CCE30196.1 504 PVAFQYSAEVFPTIQREQGMAWAVcINNTFAGILG 538
                 999999999***************55555999998 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 5.7e-08
       MFS_1   9 alarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa..ss.................... 84 
                 +++++i+++  +  + e+ g+s++e+  +  +y+++++va++p+ +l+d  Grr + ++++ l++++ ll++ ++  ++                    
  CCE30196.1 383 MCGINIISFYSS-SIFESVGYSKTEALYASLGYGAVQVVATIPTLFLIDTKGRRTLTMITFPLMCIF-LLAAgLSllPNgayhisptdldqnpagdfrs 479
                 444455555555.999***************************************999999999999.4444453343345555667888889999999 PP

       MFS_1  85 ........lwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllllpe 174
                         + +++++ +  +lg+    p++  + a++fp  +r ++++++   ++  a ilg  +  + +     +++f + a++ l+a ++++++++e
  CCE30196.1 480 rgarigpvVLFVYLFTICYSLGE---GPVAFQYSAEVFPTIQREQGMAWAVCINNTFAgILGLTFPRMKT-VMTATGAFGFYAGLNLIAWLMIFCFVRE 574
                 99996553225555555666665...9********************99999888777577776666555.66799*************8874444433 PP

       MFS_1 175 epperkrkspke 186
                 +  +  + ++++
  CCE30196.1 575 T--KQLTLEEID 584
                 3..333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.20s 00:00:00.78 Elapsed: 00:00:00.36
# Mc/sec: 5248.26
//
Query:       CCE30197.1  [L=991]
Description: uncharacterized protein CPUR_04045 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-37  127.8   0.0    1.8e-36  125.9   0.0    1.9  2  NatB_MDM20       N-acetyltransferase B complex (NatB) non cat
  ------ inclusion threshold ------
       0.71   10.1   3.0          3    8.1   0.0    3.5  5  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> NatB_MDM20  N-acetyltransferase B complex (NatB) non catalytic subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       0.3   2.7e+03      17      42 ..     176     208 ..     156     212 .. 0.47
   2 !  125.9   0.0     2e-40   1.8e-36       1     346 [.     296     681 ..     296     697 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.3
  NatB_MDM20  17 k.......kesleevqkfieelikkeeakspks 42 
                 k       ++++e++ ++ e+  ++++a  ++s
  CCE30197.1 176 KklysmlaQKQIERAAQLAEQAHASQTADGMPS 208
                 033333333345555555555555555555555 PP

  == domain 2  score: 125.9 bits;  conditional E-value: 2e-40
  NatB_MDM20   1 Wkvwklyldsafklkekke.sleevqkfieelikkeeakspksRnpyLArLelikrlrkrskkae.eektslsglvelileYfekfgsKlccfeDLkkY 97 
                 W vw+++l++a ++k ++   ++++ +++ ++ k++  k  ++Rn+ LA++  ++ l+   +++  ++++ +s +++ +l Y+e +g+ + cf+D+k +
  CCE30197.1 296 WLVWRHFLEAAAQIKGSDAgVVAKLRDLLIRVAKTKGLKPIYKRNILLAKVSSSFILEAGDQEDVdSDDKLSSLRLQDLLLYIEDQGTSMACFDDIKEF 394
                 99************997546********************************99966655555445444444449************************ PP

  NatB_MDM20  98 leeLskeerkeflekvs..............................slskseseseeekkekklrrlinalklerclgeheklseee........... 155
                 +e L+ +  k ++                                  ++s s++ ++             a                +           
  CCE30197.1 395 VERLDVSGMKHVAYTHVpdlaknamdpeisarirllslklqylvttcPISRSQVAGKA-----------PAS---------------Kclvcdsvfete 467
                 ****555333333333356666666666666666665555554443322233222222...........222...............112222222222 PP

  NatB_MDM20 156 .....keelvtellaiYraslrl..gaelletesqpsddlallaahalldlseks.........vdstlliqaillLeflltksphNfqlkLlLvrlYl 238
                       +++ +++l++Y+++  l  + +     sq+  +lal+a     +              ++ + l++a+l+Le+++  +p+  q  L+Lv+l l
  CCE30197.1 468 cchscFSTITSAALKAYKSASALeeQRDDGPVQSQILPELALVAGLCSAQMAFCGrpgyrvsepPKTEFLVRALLILENQVFLTPKHSQTCLVLVQLHL 566
                 2222258899999****9999995555555669999999999998776666655577999***99999******************************* PP

  NatB_MDM20 239 llGagslalklyskLdiKqiQlDtlghllftrlstlgpfska......lslleqalrfYesaek.etpesiakayekgsYskieefiefqerLknSlqr 330
                 llG + +  +++++L +K+++ D l++++++rlst+ p  ++       +l+e+++  + ++ +  +p+ ++ a+e gsY +i ++ ++ ++L+  ++r
  CCE30197.1 567 LLGSAHRCREIWQELGVKRTIVDCLAPIFYDRLSTISPVILDssddwgWELIETLRGHFANSLRtPMPRTLIGAFEAGSYASIIDMPKYTHNLRFGCTR 665
                 **************************************996666789999*********99988679******************************** PP

  NatB_MDM20 331 amvaleerrlqrllgg 346
                 am+ +ee r++rllg+
  CCE30197.1 666 AMSLVEEARADRLLGE 681
                 **************94 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.23   2.1e+03      15      36 ..      18      39 ..      12      40 .. 0.69
   2 ?   -2.3   0.0       0.6   5.4e+03      32      42 ..     122     132 ..     117     132 .. 0.84
   3 ?    8.1   0.0   0.00033         3       5      25 ..     213     235 ..     213     238 .. 0.93
   4 ?   -1.9   0.1      0.46   4.1e+03      13      38 ..     562     590 ..     560     591 .. 0.73
   5 ?   -3.5   0.0       1.5   1.3e+04      33      45 ..     937     949 ..     931     949 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.23
                     HHHHHTTCHHHHHHHHT..SS-HH CS
  Myb_DNA-binding 15 avkkhGnrWkkIaerlg..gRtek 36
                     a++   ++W+ + +  +   Rt +
       CCE30197.1 18 AFQD--GNWAVVMRLAQqrARTTN 39
                     5544..89****999995557766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.6
                      SS-HHHHHHHH CS
  Myb_DNA-binding  32 gRtekqcrsrw 42 
                      +R+  +c ++w
       CCE30197.1 122 TRCLQSCLLHW 132
                      9*********9 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00033
                      BHHHHHHHHHHHHHHT..TCHHH CS
  Myb_DNA-binding   5 teeEdelLleavkkhG..nrWkk 25 
                      +e+E +lL++ v+ hG  ++W+k
       CCE30197.1 213 SEQEILLLYDIVETHGtaDDWNK 235
                      799*************9999*97 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.46
                      HHHHHHHT..TCHHHHHHHHT.SS-HHHH CS
  Myb_DNA-binding  13 leavkkhG..nrWkkIaerlg.gRtekqc 38 
                      ++++ ++G   r ++I ++lg  Rt  +c
       CCE30197.1 562 VQLHLLLGsaHRCREIWQELGvKRTIVDC 590
                      56666666666667888899999999988 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 1.5
                      S-HHHHHHHHHHH CS
  Myb_DNA-binding  33 Rtekqcrsrwrny 45 
                      ++++++ sr+r +
       CCE30197.1 937 KSGEEVASRLREW 949
                      8999*****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (991 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.39
# Mc/sec: 7682.78
//
Query:       CCE30198.1  [L=84]
Description: uncharacterized protein CPUR_04046 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0049   17.1   2.7     0.0063   16.7   2.7    1.2  1  MTCP1     Mature-T-Cell Proliferation I type
     0.0053   16.8   5.0     0.0089   16.1   5.0    1.4  1  CHCH      CHCH domain
  ------ inclusion threshold ------
      0.023   15.1   1.4      0.035   14.5   1.4    1.3  1  COX17     Cytochrome C oxidase copper chaperone (COX17)
       0.12   12.4   2.9        1.4    9.0   0.4    2.2  2  Cmc1      Cytochrome c oxidase biogenesis protein Cmc1 like


Domain annotation for each model (and alignments):
>> MTCP1  Mature-T-Cell Proliferation I type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.7   1.4e-06    0.0063       1      46 [.      36      80 ..      36      84 .] 0.84

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.4e-06
       MTCP1  1 pckkeAcaiqdCLqknnYneskCekvieaLyeCCkkfykengedak 46
                pc++ A +  +CL +n  ++s C+++ +a ++C +++ +++  + +
  CCE30198.1 36 PCQEAAQRSYKCLFRNDGDKSMCSDYFQAYKDCKAAWNETRR-KGA 80
                8****************************9998888877754.333 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   5.0     2e-06    0.0089       1      33 [.      37      69 ..      37      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2e-06
                THHHHHHHHHHHHHCTSSTTTTHHHHHHHHHHH CS
        CHCH  1 CgeefkeylkClkdnsdefskCrkefeafkeCv 33
                C+e  +  +kCl  n+ + s C+++f+a+k+C+
  CCE30198.1 37 CQEAAQRSYKCLFRNDGDKSMCSDYFQAYKDCK 69
                777788889***********************8 PP

>> COX17  Cytochrome C oxidase copper chaperone (COX17)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.4   7.8e-06     0.035       9      40 ..      37      68 ..      31      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.8e-06
       COX17  9 CpetKkaRDeCilesgaeeekCkelieahkaC 40
                C+e  +   +C+++++ +++ C+++ +a+k+C
  CCE30198.1 37 CQEAAQRSYKCLFRNDGDKSMCSDYFQAYKDC 68
                7777777789*****98888************ PP

>> Cmc1  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1    0.0068        31      30      48 ..      32      50 ..      25      57 .. 0.81
   2 ?    9.0   0.4   0.00031       1.4      10      26 ..      55      71 ..      50      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0068
        Cmc1 30 kvvgkCneekeamkkClke 48
                k+v  C+e+ +   kCl  
  CCE30198.1 32 KFVDPCQEAAQRSYKCLFR 50
                78889***********965 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00031
        Cmc1 10 rkeCaelikalaeChkd 26
                +  C+++ +a+++C ++
  CCE30198.1 55 KSMCSDYFQAYKDCKAA 71
                578***********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 731.55
//
Query:       CCE30199.1  [L=460]
Description: related to geranylgeranyltransferase beta subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-34  117.9  12.9    5.9e-07   29.1   0.1    5.9  6  Prenyltrans  Prenyltransferase and squalene oxidase repeat


Domain annotation for each model (and alignments):
>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   4.2e-09   7.5e-05       2      40 ..      91     139 ..      90     142 .. 0.92
   2 !   19.0   0.0   4.7e-08   0.00085       3      38 ..     158     198 ..     156     199 .. 0.94
   3 !   25.5   0.1   4.5e-10     8e-06       2      44 .]     221     263 ..     220     263 .. 0.95
   4 ?   -1.6   0.0      0.13   2.4e+03       1      14 [.     282     295 ..     282     295 .. 0.89
   5 !   25.3   1.6   5.2e-10   9.3e-06      19      44 .]     333     358 ..     333     358 .. 0.99
   6 !   29.1   0.1   3.3e-11   5.9e-07       7      44 .]     369     407 ..     363     407 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.2e-09
                  HHHHHHHHHHHHSHTTS-BBSSTTS..........SBBHHHHHHHHHHH CS
  Prenyltrans   2 dvekavefLlscQnedGGwggrpgs..........esdtyytywalaaL 40 
                  d+ +++ ++ls Q+++GG++g++ +           + +++t++al+ L
   CCE30199.1  91 DRSSIRTWVLSLQHPQGGFCGSATHmlvgqdshkgSANLAATFFALLLL 139
                  678999*****************99*****9999999999999999876 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 4.7e-08
                  HHHHHHHHHHHSHTTS-BBSSTTS......SBBHHHHHHHHH CS
  Prenyltrans   3 vekavefLlscQnedGGwggrpgs......esdtyytywala 38 
                  ++k++ + ++ Q++dG++g   +       + d++++y a++
   CCE30199.1 158 RKKLLHWMKKLQRPDGSFGQVLWEgepvggR-DMRHSYLASC 198
                  89***************************88.*******987 PP

  == domain 3  score: 25.5 bits;  conditional E-value: 4.5e-10
                  HHHHHHHHHHHHSHTTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   2 dvekavefLlscQnedGGwggrpgsesdtyytywalaaLallG 44 
                  dve +++ ++ +Q +dGG ++  ++e++++y+y+a+ aL++l+
   CCE30199.1 221 DVEGMIDHVRHTQTYDGGVAEALDHEAHAGYAYCAVGALYMLD 263
                  789999999********************************96 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.13
                  HHHHHHHHHHHHHS CS
  Prenyltrans   1 idvekavefLlscQ 14 
                  +d+  +++fL  +Q
   CCE30199.1 282 PDRTALIRFLVHRQ 295
                  68899*****9998 PP

  == domain 5  score: 25.3 bits;  conditional E-value: 5.2e-10
                  -BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans  19 GwggrpgsesdtyytywalaaLallG 44 
                  Gw+gr+++ +dt+y++w+  +L+++G
   CCE30199.1 333 GWNGRWNKKADTCYCWWVAGTLSMMG 358
                  9************************8 PP

  == domain 6  score: 29.1 bits;  conditional E-value: 3.3e-11
                  HHHHHHHSH.TTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   7 vefLlscQn.edGGwggrpgsesdtyytywalaaLallG 44 
                  + +Ll++ +   GG++  +g+++d+y++y +laaLa +G
   CCE30199.1 369 RAYLLNITQhCTGGFSKYAGGYPDLYHAYLGLAALAVIG 407
                  6899**9999**************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3764.94
//
Query:       CCE30200.1  [L=190]
Description: uncharacterized protein CPUR_04048 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-63  213.0   0.0    2.3e-63  212.8   0.0    1.0  1  Ilm1        Increased loss of mitochondrial DNA protein 1
  ------ inclusion threshold ------
      0.076   12.9   0.3      0.076   12.9   0.3    1.9  2  SVM_signal  SVM protein signal sequence


Domain annotation for each model (and alignments):
>> Ilm1  Increased loss of mitochondrial DNA protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.8   0.0   2.5e-67   2.3e-63       1     165 []       4     175 ..       4     175 .. 0.98

  Alignments for each domain:
  == domain 1  score: 212.8 bits;  conditional E-value: 2.5e-67
        Ilm1   1 iSsktlirslalfhltlavylltspeviadqelvyllgealridaarsfskpssplAflgvlLlvlalvDlvllslneelavaeywgrqaplRlllffi 99 
                 i+sktli s++lfh++l+v+++t+p+ i dq lv +lg++++i++ar f+ +s+plAflg +L++l+l+Dl++ s++eel +++ywg+qaplR+l+ ++
  CCE30200.1   4 ITSKTLIISISLFHIALGVIFITNPQRIPDQILVQVLGQSMGIPHARGFDAQSHPLAFLGAVLAFLGLSDLISFSMPEELGALYYWGTQAPLRALFAIL 102
                 79************************************************************************************************* PP

        Ilm1 100 vslyiYlssesswla.........akgasyaaavsgvgleeLknrvvftfaflEmmfwfwvfvtLreErrevlar 165
                 v+ yiY++ +ss+l+         ++++sy++a  ++g+++Lknrv+f+f+f+Emm+wfwv+vtLreEr ev++r
  CCE30200.1 103 VTSYIYAFGPSSPLYggathltrgGQNPSYHPA--RWGGDALKNRVFFSFVFVEMMAWFWVWVTLREERPEVMER 175
                 ********************9999999999999..************************************9986 PP

>> SVM_signal  SVM protein signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   8.4e-06     0.076       9      27 ..       9      28 ..       5      31 .. 0.87
   2 ?   -2.6   0.2      0.62   5.5e+03      16      21 ..      66      71 ..      64      71 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.4e-06
  SVM_signal  9 lilnIiLF.ifLGLfLItNn 27
                li++I LF i LG ++ItN 
  CCE30200.1  9 LIISISLFhIALGVIFITNP 28
                899*****788********6 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.62
  SVM_signal 16 FifLGL 21
                 +fLGL
  CCE30200.1 66 LAFLGL 71
                689998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1372.22
//
Query:       CCE30201.1  [L=1014]
Description: related to serine/threonine-specific protein kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-65  219.7   0.0    5.9e-65  219.3   0.0    1.2  1  Pkinase        Protein kinase domain
    1.4e-40  139.2   0.0    2.2e-40  138.6   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
    3.3e-08   33.2   0.0    1.9e-07   30.7   0.0    1.9  2  Kinase-like    Kinase-like
    3.7e-05   22.8   0.0    3.7e-05   22.8   0.0    2.1  3  Haspin_kinase  Haspin like kinase domain
  ------ inclusion threshold ------
      0.014   15.4   1.2       0.04   13.8   0.1    2.1  3  APH            Phosphotransferase enzyme family
      0.018   14.4   0.5       0.14   11.5   0.0    2.4  2  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
      0.045   12.8   0.0       0.07   12.2   0.0    1.2  1  Seadorna_VP7   Seadornavirus VP7


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.3   0.0   2.3e-68   5.9e-65       1     264 []     133     380 ..     133     380 .. 0.91

  Alignments for each domain:
  == domain 1  score: 219.3 bits;  conditional E-value: 2.3e-68
                 EEEEEEEEEESSEEEEEEEETTTT.EEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketg.kivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 y+  + +G+GsfGkVy a++k t+  +v++K   k++       +++rEi+ ++++ hp+i rlyev+ +++ ++lvley++g+el ++l ++g l+  
  CCE30201.1 133 YTLGRLIGKGSFGKVYLATHKLTNgSKVVLKSAHKDD------ANLAREIHHHRQFVHPHIARLYEVIITESLVWLVLEYCSGDELYNHLLERGPLPVP 225
                 677899*************997761455555544443......35899*************************************************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS- CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkp 195
                 +++ki++q++ +++y+Hs++++HrDlK eNiL+d+++++K++DFG+ +e+e + + l++f+gt  Y APE+lk+++y ++kvDvWslGvily ll+g+ 
  CCE30201.1 226 KVQKIFAQLVGAVSYVHSQSCVHRDLKLENILLDKNENVKLVDFGFTREYEGRMNyLQTFCGTICYAAPEMLKGEKYaGEKVDVWSLGVILYALLCGEL 324
                 ****************************************************99999***************999999********************* PP

                 STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 196 pfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 pf +++++       ++    +kil   +e+ + ++++  +a++l+k ll+k p  R+ ++++l+hp+l
  CCE30201.1 325 PFDDDDDNV------TR----TKIL---TEDPKFPDHLTADALSLIKLLLSKRPLPRPAFADILAHPFL 380
                 ***444433......33....3555...4589999********************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.0   8.5e-44   2.2e-40       3     256 ..     135     375 ..     133     377 .. 0.91

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 8.5e-44
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  lg+ +G+G+fGkV+ +t k    ++  kV++K+      +++ ++l +e++  +++ hp+i +l+ v++ e+ +++v+ey++g +L ++L ++   +l
   CCE30201.1 135 LGRLIGKGSFGKVYLATHK---LTNGSKVVLKSA-----HKDDANLAREIHHHRQFVHPHIARLYEVIITESLVWLVLEYCSGDELYNHLLER--GPL 222
                  7899*************99...788899***998.....3345789*********************************************98..9** PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHHHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkft.sksDvWsfGvllwE 197
                   + ++ ++ +q+  +++y++s+++vHrdl   N+Ll++n+ vk+ DfG +r+ e + +y ++      + + apE+lk +k+  +k DvWs Gv+l+ 
   CCE30201.1 223 PVPKVQKIFAQLVGAVSYVHSQSCVHRDLKLENILLDKNENVKLVDFGFTREYEGRMNYLQT--FCGTICYAAPEMLKGEKYAgEKVDVWSLGVILYA 318
                  *****************************************************777777654..566799*********9976489************ PP

                  HHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 198 iftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  +++ ge p+ + +++ + +k+ + +  + p++ +++  +l+k  ++++p  Rp f++++
   CCE30201.1 319 LLC-GELPFDDDDDNVTRTKILT-EDPKFPDHLTADALSLIKLLLSKRPLPRPAFADIL 375
                  **9.*****99877666666644.45688999************************996 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.24   6.2e+02      16      51 ..     135     170 ..     130     184 .. 0.80
   2 !   30.7   0.0   7.2e-11   1.9e-07     147     260 ..     228     336 ..     209     363 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.24
  Kinase-like  16 rgellkkgdrsvvfevkdqetgeplavkvfllpsea 51 
                   g l++kg +++v++++ + t+ + +v     +++a
   CCE30201.1 135 LGRLIGKGSFGKVYLATHKLTNGSKVVLKSAHKDDA 170
                  6889*****************999988877766654 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 7.2e-11
  Kinase-like 147 lllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.seve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviy 241
                  + + +ql+  + + +++  vh +++ +n+lld++  ++l +f+  + +  ++    + +    +a pE+l    +y          k+d+W lG+  y
   CCE30201.1 228 QKIFAQLVGAVSYVHSQSCVHRDLKLENILLDKNENVKLVDFGFTREYEGRMNYlQTFCgtICYAAPEMLKG-EKY-------AGEKVDVWSLGVILY 317
                  556699*************************************99999888876477776677999999876.233.......4579*********** PP

  Kinase-like 242 riwclklPltlateeakee 260
                   + c +lP++ + +++   
   CCE30201.1 318 ALLCGELPFDDDDDNVTRT 336
                  **********998887665 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.5e-08   3.7e-05     206     257 ..     225     275 ..     194     285 .. 0.83
   2 ?   -6.0   2.6         7   1.8e+04      14      47 ..     643     688 ..     636     691 .. 0.56
   3 ?  -11.0   7.9         7   1.8e+04       1      30 [.     780     810 ..     778     827 .. 0.59

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.5e-08
  Haspin_kinase 206 kqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                     ++++if q v  ++ + ++    HRdL+l+niL+dkn nv l+d+   R  
     CCE30201.1 225 PKVQKIFAQLVGAVSYVHSQ-SCVHRDLKLENILLDKNENVKLVDFGFTREY 275
                    57889999999998888776.567**********************999965 PP

  == domain 2  score: -6.0 bits;  conditional E-value: 7
  Haspin_kinase  14 ssqsslkhk.tshssLqkf...........sssssessssnkislP 47 
                     s++ l hk +shs   +              +ss +ss++++slP
     CCE30201.1 643 RSTPDLHHKdSSHSNSSRKdvsprpqtskyPTTSSVNSSQPTVSLP 688
                    5666677762234433333445555554445666666677777776 PP

  == domain 3  score: -11.0 bits;  conditional E-value: 7
  Haspin_kinase   1 sssslsleslk.srssqsslkhktshssLqk 30 
                    sss++s++s+  +r s+s+ +  +s  s+  
     CCE30201.1 780 SSSVSSIRSMHhHRHSHSKASSTSSTGSVST 810
                    5677777776514566666666666555544 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.82   2.1e+03      22      84 ..     159     214 ..     143     242 .. 0.63
   2 ?   13.8   0.1   1.5e-05      0.04     166     196 ..     244     272 ..     226     273 .. 0.85
   3 ?   -2.8   0.1       1.9   4.8e+03      85     105 ..     454     474 ..     404     535 .. 0.54

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.82
                 -EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH  22 ryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84 
                 ++vl+ +++   a+ +r++++  ++++ + ++  ev+      +e++ +++++ey+ g  l++
  CCE30201.1 159 KVVLKSAHKD-DANLAREIHHHRQFVHPHIARLYEVII-----TESL-VWLVLEYCSGDELYN 214
                 6677777777.666666666666666666334444444.....2222.677777777777777 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.5e-05
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 ++ +H+Dl++ N+l+d++++    ++Df+++
  CCE30201.1 244 QSCVHRDLKLENILLDKNENVK--LVDFGFT 272
                 6679************777777..****986 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHHHHHHCCH CS
         APH  85 klsaaqlpellealgeflaal 105
                 k ++++l++ l++l  + ++l
  CCE30201.1 454 KRQEKDLEKELRRLSTASGRL 474
                 223333333333333333333 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.3e-05      0.14     121     166 ..     228     269 ..     210     276 .. 0.84
   2 ?   -0.4   0.3      0.23   5.9e+02     161     191 ..     436     468 ..     401     486 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.3e-05
         Kdo 121 rallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 ++++ ++  +++  h+    H+dl   nill+++e    ++ l+D+
  CCE30201.1 228 QKIFAQLVGAVSYVHSQSCVHRDLKLENILLDKNE----NVKLVDF 269
                 5666666778999*********************9....9999998 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.23
         Kdo 161 iwliDldkarlrlr..adrwrekdLarLkrsfl 191
                  w + l+k +++++  +++ +ekdL++ +r++ 
  CCE30201.1 436 WWKLLLEKEERKMQrrERKRQEKDLEKELRRLS 468
                 555557777777654356677788876555544 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.7e-05      0.07     154     187 ..     238     269 ..     217     279 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
  Seadorna_VP7 154 LmdfhsestnllhGDcnpenlmcDknGylklvDP 187
                   +  +h  s+ ++h D + en++ Dkn ++klvD 
    CCE30201.1 238 VSYVH--SQSCVHRDLKLENILLDKNENVKLVDF 269
                   44556..899**********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1163  (0.064867); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.63
# Mc/sec: 4824.64
//
Query:       CCE30202.1  [L=1746]
Description: probable SWR1-DEAH-box protein, putative RNA helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-66  225.1   0.3    1.6e-66  224.4   0.3    1.3  1  SNF2_N      SNF2 family N-terminal domain
      1e-18   67.7   0.0    7.6e-18   64.9   0.0    2.2  2  Helicase_C  Helicase conserved C-terminal domain
    3.4e-09   36.9   0.0    7.4e-09   35.8   0.0    1.6  1  ResIII      Type III restriction enzyme, res subunit
    0.00023   21.4  12.5    0.00023   21.4  12.5    2.4  2  HSA         HSA
    0.00029   20.7   0.0    0.00074   19.3   0.0    1.6  1  DEAD        DEAD/DEAH box helicase
     0.0027   16.9   0.3        1.1    8.4   0.0    2.8  2  HDA2-3      Class II histone deacetylase complex subunits 2 a


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.4   0.3   5.4e-70   1.6e-66      52     349 ..     878    1160 ..     873    1161 .. 0.88

  Alignments for each domain:
  == domain 1  score: 224.4 bits;  conditional E-value: 5.4e-70
                  HHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-------------- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N   52 kqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklla 148 
                  ++++ +GiLaDemGLGKT+q++al++++  +++            gp+L+vvP+s++ +We e+++++++ ++  +++++++    k++++  +   
  CCE30202.1  878 YANNTNGILADEMGLGKTIQTIALLAHLACHHHA----------WGPHLVVVPTSVMLNWEMEFKKWCPGFKILAYYGSQEE---RKRKRQGWNNDD 961 
                  67899*********************66665554..........479************************99776666654...333445556666 PP

                  ---EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTT.....T--HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxx RF
      SNF2_N  149 dydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreep.....fgekqt 240 
                    +v+it+Y+ + +++      +v+k+++w+++vlDE+h++kn +s+  ++++ ++t+ r++ltGTP+qn+l++l++Ll fL++       f + q 
  CCE30202.1  962 IWNVCITSYQLVLQDQ------QVFKRRRWHFMVLDEAHNIKNFKSQRWQTLLGFNTRARLLLTGTPLQNNLTELWSLLFFLMPAEngvggFADLQE 1052
                  689**********898......9***********************************************************98543333389999* PP

                  HHHHTHHHHH...........HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHH CS
                  xxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  241 fdkllqrpie...........aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkss 326 
                  f++++++p             ++a++ +s+L+++l++++lrr k+dvek++P k e++ f++lsk +r++Y              +l+rse + + s
  CCE30202.1 1053 FQDWFHKPESqilesgrdqmdEEAKAIISKLHKVLRPYLLRRLKADVEKQMPAKYEHVEFCRLSKRQRELYD------------GFLSRSETKETLS 1137
                  ********999*********9999************************************************............5555555555555 PP

                  H-HHH-HHHHHHHHHHHHH---X CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  327 skskekilelllelrqacnhpql 349 
                  s +   i+++l++lr++cnhp+l
  CCE30202.1 1138 SGNYLSIINCLMQLRKVCNHPDL 1160
                  533466***************98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.45   1.3e+03      11      66 ..     907     961 ..     897     971 .. 0.67
   2 !   64.9   0.0   2.5e-21   7.6e-18       2     111 .]    1423    1535 ..    1422    1535 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.45
                 HHTTTTSEEEEEESSHHHHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTS CS
  Helicase_C  11 kleeeggkilifvntidrlekvklllekk...gikvavlhgelpqnereeileqfnkge 66 
                  +++  g  l++v+t  +l+    +  kk   g+k+++++g  +q+er++  + +n+++
  CCE30202.1 907 CHHHAWGPHLVVVPTSVMLNWEMEF--KKwcpGFKILAYYG--SQEERKRKRQGWNNDD 961
                 5667777788999999988653333..33467*********..6777776666666555 PP

  == domain 2  score: 64.9 bits;  conditional E-value: 2.5e-21
                  HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSS..EEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C    2 kleallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesd..vLiatdvaerGidipkvnlVinfdlpr 95  
                  kl+ l +ll kl++ g+++lif++ ++ l+ ++ +l+ +g k+++l+g ++ ++r+   ++fn++ +   ++++t+ ++ Gi+++++++Vi++d ++
  CCE30202.1 1423 KLQVLDKLLrKLQSGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGATKVEQRQILTDRFNNDPRIlcFILSTRSGGLGINLTGADTVIFYDQDW 1519
                  7889999999*****************998888887888***********************9644443799************************* PP

                  SHHHHHHHHTTSSSTT CS
  Helicase_C   96 nvtsyiqriGRtgRag 111 
                  n++  +q  +R++R+g
  CCE30202.1 1520 NPAMDKQCQDRCHRIG 1535
                  **************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.5e-12   7.4e-09       3     169 ..     862    1022 ..     860    1024 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.5e-12
                  EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG..........GEEEESSS CS
      ResIII    3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseayke......igkkvsgd 92  
                  +lreyQ + ++ l+  l   ++++g+++ + G GKT+  ++l ++l+ +++     l++vp+ s++  ++ efkk+ +   k       +      +
  CCE30202.1  862 TLREYQHDGLDWLA-GLY-ANNTNGILADEMGLGKTIQTIALLAHLACHHHAWgPHLVVVPT-SVMLNWEMEFKKWCPGF-KIlayygsQ------E 948 
                  58999999998776.554.799*****************99999999887776678888886.78889*******99985.444543321......1 PP

                  -B--..........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T..TTHHHHHT---SEEEEEESS- CS
      ResIII   93 kkka...kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk..swreilekfkeavllglTATp 169 
                  ++k+     ++++ +++++t++q + +d+       + ++r r  +++ DEaH+++  k   w+ +l   +   +l lT+Tp
  CCE30202.1  949 ERKRkrqGWNNDDIWNVCITSYQLVLQDQ-------QVFKRRRWHFMVLDEAHNIKNFKsqRWQTLLGF-NTRARLLLTGTP 1022
                  11112223345678999******999999.......99*****************99744599996665.66888889***9 PP

>> HSA  HSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4  12.5   7.6e-08   0.00023       3      66 ..     363     425 ..     361     429 .. 0.93
   2 ?   -2.9   0.8         3   8.9e+03      10      29 ..     462     481 ..     452     483 .. 0.48

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 7.6e-08
                 XXXXXXX--HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--XXXXXXXXXXXXXXXX CS
         HSA   3 eperrqkthhdylLeeilwhakdfkeerkskrakakklaravakyhnniekeeqkriereeker 66 
                 e++r q ++hd++++++ ++++ +  e++++ra akkla a+ + + +++ +   + e e++e+
  CCE30202.1 363 EAPR-QWSRHDHMMKAMANFRRLMLAEHQRHRAAAKKLAEACRDEWVRRQPKSAEQLEAEAREK 425
                 6778.99******************************************999999999999987 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3
                 --HHHHHHHTTHHHHHHHHH CS
         HSA  10 thhdylLeeilwhakdfkee 29 
                 ++  + L+e+++++++  ++
  CCE30202.1 462 KRVKAALNEAVNLSEQKLQA 481
                 22234455555555555554 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.5e-07   0.00074      15     140 ..     882    1003 ..     866    1022 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.5e-07
                  CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   15 gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrlddl 111 
                   + ++a e G GKT    i++l++++  ++      l+v+Pt   + +   ++kk++     ++l+ +g++++r+ +++  n+ di        + +
  CCE30202.1  882 TNGILADEMGLGKTIQ-TIALLAHLAC-HHHAWGPHLVVVPTSV-MLNWEMEFKKWCPG--FKILAYYGSQEERKRKRQGWNNDDIWNVCITSYQLV 973 
                  566788899*****98.4555555544.3455556789999976.55678899999996..779999998888777777767755555555555554 PP

                  H.HCTSSHCTTEEEEEEETHHHHHHTTTHH CS
                  x.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  112 l.stgklnlsqvrflVlDEadrlldqgfsd 140 
                  l +++ ++ ++  f+VlDEa+++ + + ++
  CCE30202.1  974 LqDQQVFKRRRWHFMVLDEAHNIKNFKSQR 1003
                  42566788999***********98875444 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00037       1.1      36      71 ..    1128    1164 ..    1074    1185 .. 0.76
   2 !    5.5   0.1    0.0028       8.2      86     153 ..    1417    1480 ..    1409    1571 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00037
                  HSTTT--HHHH..HHHHHHHH.HHHHHHH-GGGT--T CS
      HDA2-3   36 etsdsqeklsls.ikslticlenlslvanHPsLLvdH 71  
                  + s+ +e+ls+  + s+  cl +l+ v nHP+L +d 
  CCE30202.1 1128 SRSETKETLSSGnYLSIINCLMQLRKVCNHPDLFIDR 1164
                  44455555544468899999***************96 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0028
                  HHHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S CS
      HDA2-3   86 laetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkk 153 
                  l +  gK++vl +l+  +++         l+  +  k ld++E +l  ++ k+ r++g +  ++ +  
  CCE30202.1 1417 LQYDCGKLQVLDKLLRKLQSGG----HRALIFTQMTKVLDILEQFLNIHGHKYLRLDGATKVEQRQIL 1480
                  67889**************999....7889999999999*****************998755554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.20u 0.36s 00:00:01.56 Elapsed: 00:00:00.53
# Mc/sec: 9861.43
//
Query:       CCE30203.1  [L=142]
Description: uncharacterized protein CPUR_04051 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-08   35.1   0.6    1.3e-08   34.9   0.6    1.3  1  NDUF_B8   NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASH


Domain annotation for each model (and alignments):
>> NDUF_B8  NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.6   7.3e-13   1.3e-08      54      97 ..      26      69 ..       2     118 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 7.3e-13
     NDUF_B8 54 DglgaGDYPklpvvsaderDPyedWddrdlrrnwGelvhldldr 97
                D  + G Y + p +  + rDPy dW d+++rrn+Ge++h d d+
  CCE30203.1 26 DPDMNGGYVNPPRIKRQFRDPYADWWDPQERRNYGEPIHEDNDT 69
                3336899********************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1085.11
//
Query:       CCE30204.1  [L=528]
Description: uncharacterized protein CPUR_04052 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3765.72
//
Query:       CCE30205.1  [L=603]
Description: related to triacylglycerol lipase II precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-84  284.9   0.0    1.7e-84  284.6   0.0    1.0  1  COesterase     Carboxylesterase family
     0.0015   18.4   0.1     0.0092   15.9   0.1    2.0  1  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.6   0.0   1.9e-88   1.7e-84       2     487 ..      42     563 ..      41     566 .. 0.82

  Alignments for each domain:
  == domain 1  score: 284.6 bits;  conditional E-value: 1.9e-88
                 SSEEEETTEEEEEEEEEESTCSEEEEEEEEESSB---GGGTTS--BE.----SSEEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSSS CS
  COesterase   2 spvvetslGkvrGkrvklksekevdaFlGiPYAepPvgelRFkkPep.aepwtgvrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkekk 99 
                 +p+v++++G+ +G + +   + + d FlGiPYA++P   +RF++P+p  e w  +r At+++p C+   ++    +      +sEDCLyLn+  P+ + 
  CCE30205.1  42 APTVSVKNGTYEGIYSP---GYHQDFFLGIPYAKKP---QRFSPPQPlDEVWDTIRPATSYPPHCLGYGSENIGYN------MSEDCLYLNIIRPHGL- 127
                 6899**********999...34789**********9...9*******99*****************9996444333......9************997. PP

                 STTSSEEEEEEE--STTTS-BGCG..S-THHHHHHH.....TSEEEEE----HHHHH-B-SS..TTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEE CS
  COesterase 100 eakkklPVlVwihGggfqtgsase..ydgsaLaaeg.....nvivVtinYRlGvlGFlstgd..eeapGNvGllDqvlALrWVkenIasFGGdpervtl 189
                  ++ klPV++ ihGgg++ g + +  ++ s+++++       +i V++nYRl ++GFl  ++  ++   N+G+ Dq++AL+WV+enI++FGG pe+vt+
  CCE30205.1 128 AQDAKLPVVFNIHGGGLYQGGSADkrFNLSFIVEQSvqmkkPIIGVSLNYRLAAWGFLGSKEaiNAGATNIGYRDQRMALHWVNENIHAFGGSPEKVTI 226
                 677778**********99888866689999999998888889******************885677888****************************** PP

                 EEETHHHHHHHHHHHSGGGT..TSBSEEEEES--TTSTTTSBSH......HHHHHHHHHHHT.TS-CSSHH.HHHHHHHCS-HHHHHHCCGGSSSSSST CS
  COesterase 190 fGesAGaasvsllllsplsr..glfkraIlqSGsalspwaiqkk......arkrakklakkv.gckasssk.elveclrsksaeelldaqekaleasss 278
                 +Ges+Ga sv +++l +  +  +lf+ aI qSG   +   +          + ++++l + +  c  s  + + ++clr  + ++l +        +++
  CCE30205.1 227 WGESSGAESVTVQVLAHNGQhdRLFRGAIGQSGFGGMLPRLPGGfnatatHQTSFDNLVRSIpSCASSVNTpNALKCLRDSNFQQLNASIAH---MTEQ 322
                 ****************9888567*********96544333333334444455666666666536744444479**************99977...6777 PP

                 TC-SSS-B--SSSSSS-HHHHHHCGC..CSEEEEEEETTTTHHHHCCHSTTT..SSSSHHHHHHHHHHHHHHHHHHHCC...............HHHHH CS
  COesterase 279 klvsfaPvvdgdflpekPeellkseg..kvplliGvnkdegllflaylldke..ksvkkkeeklsesllkdelyleaek...............keels 358
                    +++Pv dg+fl+++ ++++++ +  kvp+l+G n+deg++f  +   ++  + + ++  + ++s  +++ ++e ++               + ++ 
  CCE30205.1 323 STANWVPVLDGNFLNSHSAKQIANGQfaKVPILVGSNSDEGAMFGGVANTDDdfRRMVQQAFSPNASDNVNKSIHEIVNevaylypniqsvgipSLQTM 421
                 889*********************88*****************97654444322233333333333333333333333378889999977766644444 PP

                 HHHHHHHSTTTSSTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSGCS.......... CS
  COesterase 359 eaikeeytdeadrddaeksrkallelltdvlfkapvlrtaklhasrgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllekee.......... 447
                   +++     + +++    r++++++++d+lf    +r+  +++++g p ++Y+fd r   +  p++ g++h +e+ +vf++     +e          
  CCE30205.1 422 PHVLQAGD--EYTQQVGLQRRRVNAFIGDMLFGYLRRRANLAWSRHGIPSFAYRFDVRP--HGVPDTLGATHFQEVAFVFHNLDGVGYEtnpfggndtq 516
                 44444333..455777788999***********************************99..4559***************9866655555678888888 PP

                 S-HHHHHHHHHHHHHHHHHHHHSSTTS.......TTSS----B.TTT CS
  COesterase 448 ftkedeklsrkmmtywtnFaktgnPnk.......eeeekWpkytkee 487
                 +tk+ + l+ +m   w nF+ +++P++         ++ Wp +++++
  CCE30205.1 517 YTKKARALATTMCAQWINFIVHQDPSGprgsenePANTTWPVFNPQD 563
                 9999***********************99999988999999998876 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1     1e-06    0.0092       3      86 ..     138     237 ..     136     279 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1e-06
                    EE--STTTS--TTTT....HHHHHHHHHHH.TSEEEEEE---TT......TS-TTH.....HHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHH CS
  Abhydrolase_3   3 yfHGGGfvlgsldth....dalcrelakel.gavvvsvdYrlAP......ehpfPa.....avedalaalrwlaeqawelgadpsrivlaGdSaGG 82 
                     +HGGG + g+++ +      ++++ +++   ++ vs +YrlA       +  + a      + d   al+w+ e+ +++g  p+++++ G+S G+
     CCE30205.1 138 NIHGGGLYQGGSADKrfnlSFIVEQSVQMKkPIIGVSLNYRLAAwgflgsKEAINAgatniGYRDQRMALHWVNENIHAFGGSPEKVTIWGESSGA 233
                    57777766444444425533344443333213455777788775333333333332111116889999********99*****************9 PP

                    HHHH CS
  Abhydrolase_3  83 nlaa 86 
                      ++
     CCE30205.1 234 ESVT 237
                    7544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4422.91
//
Query:       CCE30206.1  [L=272]
Description: uncharacterized protein CPUR_04054 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.2    6.4   7.6        3.2    5.9   7.6    1.1  1  SSP160    Special lobe-specific silk protein SSP160


Domain annotation for each model (and alignments):
>> SSP160  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   7.6   0.00018       3.2     272     305 ..      98     130 ..      83     140 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00018
      SSP160 272 alealasssasanstssststststttststttt 305
                 a + + +s+a+ n  s+stststst+tstst+t 
  CCE30206.1  98 AEQYFRDSAATDN-DSTSTSTSTSTSTSTSTATD 130
                 3344444444443.33444455555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2117.42
//
Query:       CCE30207.1  [L=235]
Description: uncharacterized protein CPUR_04055 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-17   64.1   0.0    1.7e-17   63.8   0.0    1.1  1  Peptidase_M24  Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   9.3e-22   1.7e-17       3     166 ..      19     184 ..      17     207 .. 0.85

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 9.3e-22
                    HHHHHHHHHHHHHHHHHH.HHTTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTT.BCSSSB--TTEEEEEEEEEEETTEEEEEEEEE CS
  Peptidase_M24   3 irkaariasaaleavlea.ikpgvterelaaeieattlkrhgarglafppivasgenaavlhy.tpndrvlkegdlvlidagaeydgyasDitrTv 96 
                    +r a + a + +ea+ +  i+pgv e++l + i +  +   g + ++++ +v sg+n+  +   +p drv++e+d++++d+g++++ + +D +rT+
     CCE30207.1  19 LRDAEAKAVQLFEAIERDlIRPGVHEKDLSKQIYDLGFDLFGIKTHWHKRVVRSGPNTLCPFEeNPPDRVIEEDDILIVDLGPVFEAWEADFGRTF 114
                    799999*********6445*****************99*********************99998889***************************** PP

                    ECSSGSHHHHHHHHHHHHHHHHHHHC-S..TTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEEEE CS
  Peptidase_M24  97 lvGkftpeqrelyeavleaqeaaikavk..pGvtlseidaaarevlesaglakffphglGHgvGlevhdegp 166
                    ++G++  + + l +a++ + +++  +    p+++++e++ +a + +e++g+  f     GH vG   h+  p
     CCE30207.1 115 VLGSDAGKLK-LRDALEPMWHKVKGEYDsnPDMSGEELYGIAVRAAEAEGW-VFGAPIAGHIVGSFPHERIP 184
                    ***6655555.77777777777766553449****************99**.7777799*****87776644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1993.67
//
Query:       CCE30208.1  [L=607]
Description: related to triacylglycerol lipase V precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-82  276.1   0.0    8.4e-82  275.7   0.0    1.1  1  COesterase     Carboxylesterase family
  ------ inclusion threshold ------
      0.036   13.9   0.8       0.34   10.7   0.8    2.1  1  Abhydrolase_3  alpha/beta hydrolase fold
      0.046   13.2   0.3      0.076   12.5   0.3    1.2  1  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.7   0.0   1.4e-85   8.4e-82       2     487 ..      41     567 ..      40     570 .. 0.83

  Alignments for each domain:
  == domain 1  score: 275.7 bits;  conditional E-value: 1.4e-85
                 SSEEEETTEEEEEEEEEESTCSEEEEEEEEESSB---GGGTTS--BE.----SSEEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSSS CS
  COesterase   2 spvvetslGkvrGkrvklksekevdaFlGiPYAepPvgelRFkkPep.aepwtgvrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkekk 99 
                 +p+v++++G+ +G   +   + + d FlGiPYA++P   +RF++P+p  e w  +r At+++p C+   ++    +      +sEDCLyLn+  P+ + 
  CCE30208.1  41 KPTVSVKNGTYEGIFSP---GYHQDFFLGIPYAKKP---QRFSPPQPlDEGWDTIRPATSYPPHCLGYGSFNIGYN------MSEDCLYLNIIRPHGL- 126
                 68899999999999988...337899*********9...9*******99*****************9996544433......9************997. PP

                 STTSSEEEEEEE--STTTS-BGCG..S-THHHHHHH.....TSEEEEE----HHHHH-B-SS..TTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEE CS
  COesterase 100 eakkklPVlVwihGggfqtgsase..ydgsaLaaeg.....nvivVtinYRlGvlGFlstgd..eeapGNvGllDqvlALrWVkenIasFGGdpervtl 189
                  ++ klPV ++ihGgg++ g + +  ++ s+++++       +i V++nYRlG++GFl  ++  ++   N+G+ Dq++AL+WV+enI++FGG +++vt+
  CCE30208.1 127 AQDAKLPVAFYIHGGGLYQGGSADkrFNLSFIVEQSvrmkkPIIGVSLNYRLGAWGFLGSKEalDAGATNIGFRDQRMALHWVNENIHAFGGSSDKVTI 225
                 677778**********99988866689999999998999989******************776688899****************************** PP

                 EEETHHHHHHHHHHHSGGGT..TSBSEEEEES--TTSTTTSBSH..HHHHHHHHHHHTTS......-CSSHH.HHHHHHHCS-HHHHHHCCGGSSSSSS CS
  COesterase 190 fGesAGaasvsllllsplsr..glfkraIlqSGsalspwaiqkk..arkrakklakkvgc......kasssk.elveclrsksaeelldaqekaleass 277
                 +G s+Ga sv +++l +  +  +lf+ aI qSG   +   +     a  + +++ +++        +  + + + +eclr+ + ++l +     +++  
  CCE30208.1 226 WGGSSGAESVTAQVLAHNGQhgRLFRGAIGQSGFGGMLPRLPGGfnATATLQTIFNDLVRsipscaSLVN-TiNALECLRNADFQQLNASIAH-MTEAP 322
                 ****************9888667*********96544444444345555555555555432222233333.269***************9998.89999 PP

                 TTC-SSS-B--SSSSSS-HHHHHHCGC..CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCC..................... CS
  COesterase 278 sklvsfaPvvdgdflpekPeellkseg..kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaek..................... 353
                 +  + + Pv dg+fl++  ++++++ +  kvp+l+G n+deg++f  +      ++++++++  +++l+  +  + +k                     
  CCE30208.1 323 ILALIWPPVLDGTFLTDYGAKQIANGQfaKVPILVGSNSDEGSFFGPMSGV--VNTDDDFRRAVQQVLSPAASDNINKsihaildevlylypniqsvgn 419
                 *************************88******************995433..3344444444444444444444444566688899999999966655 PP

                 .HHHHHHHHHHHHSTTTSSTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSGCS.... CS
  COesterase 354 .keelseaikeeytdeadrddaeksrkallelltdvlfkapvlrtaklhasrgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllekee.... 447
                  + ++   +++    ++ +++    r++++++++d++f    +r+  +++++g p ++Y+fd +   +  p++ g++h +e+ +v+++   e +e    
  CCE30208.1 420 pSLQTMPHLLQAG--DEYTQEVGLQRRRVNAFIGDMFFGYLRRRANLAWSRHGIPSFAYRFDVCP--HGVPDTLGASHFQEVAFVLHNLNGEGYEtnpf 514
                 4333333333333..3455667778999************************************9..4559***************9999998888999 PP

                 ......S-HHHHHHHHHHHHHHHHHHHHSSTTS.......TTSS----B.TTT CS
  COesterase 448 ......ftkedeklsrkmmtywtnFaktgnPnk.......eeeekWpkytkee 487
                       +tk+ + l+ +m   + nF+ +++P++         ++ Wp +++++
  CCE30208.1 515 ggndtqYTKKARALATTMCAQLINFIVHQDPSGpygsenePANTTWPVFNPQD 567
                 9999999999*************************9999989999**999876 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.8   5.6e-05      0.34       3      87 ..     137     237 ..     135     256 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.6e-05
                    EE--STTTS--TTTT....HHHHHHHHHHH.TSEEEEEE---TT......TS-TTH.....HHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHH CS
  Abhydrolase_3   3 yfHGGGfvlgsldth....dalcrelakel.gavvvsvdYrlAP......ehpfPa.....avedalaalrwlaeqawelgadpsrivlaGdSaGG 82 
                    y+HGGG + g+++ +      ++++ +++   ++ vs +Yrl        +  + a      + d   al+w+ e+ +++g   +++++ G S G+
     CCE30208.1 137 YIHGGGLYQGGSADKrfnlSFIVEQSVRMKkPIIGVSLNYRLGAwgflgsKEALDAgatniGFRDQRMALHWVNENIHAFGGSSDKVTIWGGSSGA 232
                    77777766444443325533333333333213444677777653222222333333111115789999********99*****************9 PP

                    HHHHH CS
  Abhydrolase_3  83 nlaaa 87 
                      ++a
     CCE30208.1 233 ESVTA 237
                    75444 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   1.3e-05     0.076      45     100 ..     199     261 ..     185     265 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
                   HHHHHHHHHHHHHTT...S--GGGEEEEEETHHHHHHHHHH...H.H-GGG-SEEEEESE--- CS
  Peptidase_S9  45 fdDfiaaaealakeg...yvdserlaitGgSyGGyltgaal...n.qrpdlFkaavaevpvvd 100
                   f+D+  a+ +++++      +s+++ i+GgS G   + a +   n q+++lF++a+ + ++  
    CCE30208.1 199 FRDQRMALHWVNENIhafGGSSDKVTIWGGSSGAESVTAQVlahNgQHGRLFRGAIGQSGFGG 261
                   5555555555544432215689***********97665432122469***********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 4803.78
//
Query:       CCE30209.1  [L=99]
Description: uncharacterized protein CPUR_04057 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.15   11.7   0.0       0.36   10.5   0.0    1.6  2  ATP-grasp_6  ATP-grasp-like domain


Domain annotation for each model (and alignments):
>> ATP-grasp_6  ATP-grasp-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.18   3.2e+03       5      18 ..      10      23 ..       9      25 .. 0.75
   2 ?   10.5   0.0     2e-05      0.36      16      40 ..      59      83 ..      54      84 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.18
  ATP-grasp_6  5 LSTqillkeAikrG 18
                 LS  il+ +  + G
   CCE30209.1 10 LSAIILMHDEDQAG 23
                 78889998876665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 2e-05
  ATP-grasp_6 16 krGikveilDrednfikLkkkdkve 40
                 ++G++v+il    ++i+L++ ++ e
   CCE30209.1 59 QQGLSVSILEAYGQMIRLRHIERFE 83
                 89*****************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 792.89
//
Query:       CCE30210.1  [L=102]
Description: uncharacterized protein CPUR_04058 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-07   29.3   0.0    6.9e-07   29.2   0.0    1.0  1  Peptidase_M24  Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   3.9e-11   6.9e-07      45     111 ..      23      89 ..       8      98 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 3.9e-11
                    CEESSSSEEEEGGGGGSTTT.BCSSSB--TTEEEEEEEEEEETTEEEEEEEEEECSSGSHHHHHHHHH CS
  Peptidase_M24  45 rglafppivasgenaavlhy.tpndrvlkegdlvlidagaeydgyasDitrTvlvGkftpeqrelyea 111
                    + ++++ +v sg+ +  +   +p drv++e+d++++d g++++ + +D +rT+++G++  + + + +a
     CCE30210.1  23 KTHWHKRVVRSGPSTLCPFEeNPPDRVIEEDDILIVDRGPVFEAWEADFGRTFVLGSDAGRLK-VRDA 89 
                    5667889999******88888889********************************4433222.3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 785.76
//
Query:       CCE30211.1  [L=376]
Description: uncharacterized protein CPUR_04059 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-11   45.0   0.1    1.6e-11   44.6   0.1    1.3  1  APH              Phosphotransferase enzyme family
    0.00024   20.5   0.0    0.00037   19.9   0.0    1.2  1  EcKinase         Ecdysteroid kinase
     0.0016   18.1   0.0     0.0029   17.2   0.0    1.4  1  Choline_kinase   Choline/ethanolamine kinase
  ------ inclusion threshold ------
      0.018   13.9   0.1      0.027   13.4   0.1    1.3  1  DUF1679          Protein of unknown function (DUF1679)
      0.034   13.3   0.0       0.08   12.1   0.1    1.6  2  Fructosamin_kin  Fructosamine kinase
       0.04   13.2   0.0      0.059   12.7   0.0    1.1  1  ALIX_LYPXL_bnd   ALIX V-shaped domain binding to HIV


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.1   5.5e-15   1.6e-11      53     212 ..     101     287 ..      27     313 .. 0.72

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 5.5e-15
                 B--B-CTTB..S-EEETTE........EEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHH.CCCGCC CS
         APH  53 pvPevlagd..tddeeigl........lfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesata.rllase 140
                 ++Pe++++d  t+ +++++         +al  y+ + s ++     q  +l+ealge l+++h  ++++++ a   a+ ++++   +s ++  ++ ++
  CCE30211.1 101 STPEMYYFDcnTNTQVHEYlpnaislkDYALKHYQRPLSTET---KVQCIQLGEALGEWLRKFHVWGGEFDGGAQLQAPVMRNQVAWNSDMQaLKKTLN 196
                 688888655558888888889988888999999999999999...99*******************999999998887766666444444442334444 PP

                 TCCHHHHHHHH..............HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..........TTEEEEE---TT-EEEECCHHHHCCHHH.C CS
         APH 141 lldlleeleeq..............vlaalaallpgelptvllHgDlhpgNllvd........pddgrvtGviDfedaglgpplyDlavllrs.w 212
                 +++ l+++ ++              +++++aa+++  ++  ++HgD+ +gN+l+         p++     ++D+e+a lg ++ D++ l++  w
  CCE30211.1 197 YDQ-LLRMVQEfpglleehehvlqeIIDMVAAERQDKSRLDVIHGDFWTGNVLLPdaalqenpPTPV---KIVDWEMAQLGIRAEDVGQLIAElW 287
                 444.66666667777776777555577777777777***********************96544444...59****************9996545 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.2e-07   0.00037     173     262 ..     199     284 ..     172     296 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.2e-07
    EcKinase 173 aalealreelpelekeaekleklkenlferllelveekeeefnvlnHGDlwvnNimfkydeeg..epedvilvDFQlsrygSpalDLlyfly 262
                 ++l+++ +e+p+l    e+ e + +++++ +++   ++++++ v+ HGD+w+ N+++   + +   p+ v++vD+ ++++g  a D+  ++ 
  CCE30211.1 199 QLLRMV-QEFPGLL---EEHEHVLQEIIDMVAAER-QDKSRLDVI-HGDFWTGNVLLPDAALQenPPTPVKIVDWEMAQLGIRAEDVGQLIA 284
                 344444.3333332...333444444444444444.777788876.**********97665444489************9988888777665 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   9.8e-07    0.0029     103     190 ..     185     286 ..     138     293 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 9.8e-07
                     CCS.TT..ECHHGGCCHCCCT.HHHHHHHHHTHHHHHH..............CHGG-EEEE-S--SGGGEEE.......-CTTEEEE--GTT-EE CS
  Choline_kinase 103 nkeaqtkakkekkkkqlklin.ledlekelekleklle..............elespvvfcHnDlqegNill......nkeekklvlIDFEYagy 176
                     n+++q  +k+ ++++ l++++ +  l +e        e              + +s +   H D   gN+ll      ++    + ++D+E a+ 
      CCE30211.1 185 NSDMQALKKTLNYDQLLRMVQeFPGLLEEH-------EhvlqeiidmvaaerQDKSRLDVIHGDFWTGNVLLpdaalqENPPTPVKIVDWEMAQL 272
                     444444444444444333332122222222.......12222344466666678888******************998888889*********** PP

                     EEHHHHHHHHHHHT CS
  Choline_kinase 177 nyrgfDlanhfiEw 190
                       r+ D+++ ++E 
      CCE30211.1 273 GIRAEDVGQLIAEL 286
                     *********99996 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1     9e-06     0.027     270     314 ..     237     283 ..     178     286 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9e-06
     DUF1679 270 lvhgDlwsaNiLfsee..eegklklkkviDyQlvslgnpaeDlvrll 314
                 ++hgD w  N+L      +e+  +  k++D+ +++lg  aeD++ l+
  CCE30211.1 237 VIHGDFWTGNVLLPDAalQENPPTPVKIVDWEMAQLGIRAEDVGQLI 283
                 68**********96542256678899*****************9987 PP

>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.55   1.6e+03       9      38 ..      15      50 ..       8     130 .. 0.61
   2 ?   12.1   0.1   2.7e-05      0.08     167     202 ..     211     249 ..     134     259 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.55
  Fructosamin_kin  9 lsealgkafeiteaekveggeineaylls......e 38
                     ++e   ++++ ++ +++ gg +n  y+ +      +
       CCE30211.1 15 WKELCYTKYAAKTLRPLRGGTANFVYHAQlhvplpS 50
                     555666666777777777777776666554444442 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.7e-05
  Fructosamin_kin 167 fakieelvervaell...skhqpkpsllHGdLWsgNaal 202
                       ++ e++++++ +++   ++ +++  ++HGd+W+gN+ l
       CCE30211.1 211 LEEHEHVLQEIIDMVaaeRQDKSRLDVIHGDFWTGNVLL 249
                      444444444444444333344566779*********865 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     2e-05     0.059      10      66 ..     188     244 ..     185     248 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
  ALIX_LYPXL_bnd  10 aeevrsqgglqrlekllqdlqelkerneeiLdeieklLdeEesedeklrakygtrWt 66 
                     ++++++  + ++l +++q+ + l+e+ e++L+ei ++ ++E++  ++l   +g+ Wt
      CCE30211.1 188 MQALKKTLNYDQLLRMVQEFPGLLEEHEHVLQEIIDMVAAERQDKSRLDVIHGDFWT 244
                     677777778899********************************9999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2758.36
//
Query:       CCE30212.1  [L=215]
Description: uncharacterized protein CPUR_04060 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-38  132.5   0.0    1.6e-38  132.1   0.0    1.2  1  Cupin_5   Cupin superfamily (DUF985)


Domain annotation for each model (and alignments):
>> Cupin_5  Cupin superfamily (DUF985)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.0   8.7e-43   1.6e-38       2     140 ..      70     203 ..      69     204 .. 0.94

  Alignments for each domain:
  == domain 1  score: 132.1 bits;  conditional E-value: 8.7e-43
                 HHHHHTT-EEBTTSSEEEEEEE.SSEEE.CSS.STC.CES-EEEEEEEE.TTBEEEEEEESSEEEEEEEEES-EEEEEEST..TSCEEE..EEESS-TT CS
     Cupin_5   2 eliaklnLephpegGyfretdrseltvpsskledgkeRsasTaIyyllt.sgevsalhrvksdevwhyhaGrpLrlvllha..dgrvet..vvlGpdva 95 
                 e+i+ lnL+p++egGyfr+t++++++vp s+      Rs+sT+I+yl+  ++ +s++h+v+++evwhy+aG+pL l  ++   +g++++  + lGp++ 
  CCE30212.1  70 EVIKLLNLSPNVEGGYFRQTFEDPDKVPGSN------RSLSTSIFYLMVgEQGISKWHTVDAAEVWHYYAGAPLFLEQVKRfgNGSINHniTALGPHIF 162
                 79*************************9876......************9***********************99999977545787777799****** PP

                 TTEBSEEEE-TTSEEEEEESSSSTSSEEEEEEEESSC--GGGEEE CS
     Cupin_5  96 ageklqlvVpagkwkaaellgddeeeylLvsctvaPGFefedfel 140
                 +ge +q+v+ + +w++a ++g+    ++Lv++tv+PGF+ e+f+l
  CCE30212.1 163 QGEVPQVVIAKRVWQRAISMGN----WTLVGTTVSPGFTQEGFKL 203
                 ********************95....***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1783.25
//
Query:       CCE30213.1  [L=254]
Description: uncharacterized protein CPUR_04061 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-20   73.7   0.0    2.6e-20   73.0   0.0    1.3  1  Cupin_5       Cupin superfamily (DUF985)
  ------ inclusion threshold ------
      0.016   15.1   2.7      0.025   14.5   2.7    1.2  1  DUF1980       Domain of unknown function (DUF1980)
       0.72    8.9  11.8       0.96    8.5  11.8    1.1  1  SprA-related  SprA-related family
        1.5    7.5   4.1        1.9    7.1   4.1    1.1  1  MAP70         Microtubule-associated protein 70
        2.7    9.0   4.0        4.7    8.2   4.0    1.4  1  DUF4834       Domain of unknown function (DUF4834)
        3.3    6.1  10.3        3.9    5.9  10.3    1.1  1  Macoilin      Macoilin family


Domain annotation for each model (and alignments):
>> Cupin_5  Cupin superfamily (DUF985)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   8.6e-24   2.6e-20       2      96 ..     103     196 ..     102     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 8.6e-24
                 HHHHHTT-EEBTTSSEEEEEEE.SSEEE.CSS.STC.CES-EEEEEEEE.TTBEEEEEEESSEEEEEEEEES-EEEEEEST.T.SCEEE..EEESS-TT CS
     Cupin_5   2 eliaklnLephpegGyfretdrseltvpsskledgkeRsasTaIyyllt.sgevsalhrvksdevwhyhaGrpLrlvllha.d.grvet..vvlGpdva 95 
                 ++i+ lnL++ +egGyfr+t++++++vp+s+      Rs+s+  yyll+ ++ +s + r    evwhy+aG+pL +v++++ + g+ ++   vlGpd+ 
  CCE30213.1 103 QVIQYLNLSTKAEGGYFRQTFEDPDKVPQSN------RSLSSLMYYLLRgADGYSSWQRAYVTEVWHYYAGAPLVMVMVQNlEnGSSNSmiSVLGPDLF 195
                 89**************************977......******************************************98755444445589999986 PP

                 T CS
     Cupin_5  96 a 96 
                 +
  CCE30213.1 196 S 196
                 5 PP

>> DUF1980  Domain of unknown function (DUF1980)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   2.7   8.5e-06     0.025      81     149 ..       8      83 ..       5     107 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.5e-06
     DUF1980  81 PlllglllptkvldssiakakGfnfslak.......eskseqkedegtqeqslkpdtssyvtkdgydkemkkeakk 149
                  ll++  +p+++l ++ ++ kGfn++ ++       +s+++++++++++++s++++ts++ +++  +++ ++   +
  CCE30213.1   8 TLLFASAIPSSALRAKASAFKGFNYKSSSltnvtsvQSNNTSNSTSNNTSNSTSNNTSNSTSNNTSNNASNNTSTN 83 
                 57888899*********************88877775555555555555555555555555555555544444443 PP

>> SprA-related  SprA-related family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  11.8   0.00032      0.96      12      89 ..      12      88 ..       6     125 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00032
  SprA-related 12 vsdvsltgLageestiadklefvssdtrsvasvvsstnsssvdatisdatsinstvktardatasastsesgsvsdti 89
                  +s ++  +L+ + s   + +++ ss   +v sv s   s+s++   s++ts n + +t++++++ as+  s +  +  
    CCE30213.1 12 ASAIPSSALRAKASA-FKGFNYKSSSLTNVTSVQSNNTSNSTSNNTSNSTSNNTSNSTSNNTSNNASNNTSTNCNNNA 88
                  566666666666633.34455666666666666655555555546666666666666655555555544444333322 PP

>> MAP70  Microtubule-associated protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.1   0.00065       1.9     392     467 ..      20      94 ..       7     111 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00065
       MAP70 392 lkhaksasksfdggkrsldrskvlsngakenselkestdetkeaeskdskkeaeeekesekakadsedlvsgllyd 467
                 l+   sa k f+  + sl +  ++++++++ns+ ++++ +++++++++s++++++++ s++++++++++ ++ l d
  CCE30213.1  20 LRAKASAFKGFNYKSSSLTNVTSVQSNNTSNSTSNNTS-NSTSNNTSNSTSNNTSNNASNNTSTNCNNNATSTLVD 94 
                 55555666666666667766555555555455554444.4444445555555566666666666666665555544 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.0    0.0016       4.7      34      80 ..      32      78 ..       5      91 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0016
     DUF4834 34 srkkssksaqkqfgnstnsnqqksqsrsetkeegeiieeersekeak 80
                 +++s  ++++ ++n+t++++++++s+s+++++ +++++++s++ ++
  CCE30213.1 32 YKSSSLTNVTSVQSNNTSNSTSNNTSNSTSNNTSNSTSNNTSNNASN 78
                44455566666666666666666666666666666655555554333 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  10.3    0.0013       3.9     305     356 ..      38      87 ..      14     142 .. 0.50

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0013
    Macoilin 305 gsesellveesvkskssssssssnknskkasagsagssnssskkhsessksv 356
                 ++ ++++ ++  ++++s ++s+s++n+ ++s+ s ++sn++s++ s++ ++ 
  CCE30213.1  38 TNVTSVQSNNT-SNSTSNNTSNSTSNNTSNST-SNNTSNNASNNTSTNCNNN 87 
                 11111111111.11111111111111111111.1222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2275  (0.126889); expected 358.6 (0.02)
Passed bias filter:                      896  (0.0499749); expected 358.6 (0.02)
Passed Vit filter:                       157  (0.00875676); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 1983.86
//
Query:       CCE30214.1  [L=339]
Description: uncharacterized protein CPUR_04062 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.083   13.2   0.0       0.18   12.1   0.0    1.5  1  PH_8      Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.9e-06      0.18      18      74 ..     157     211 ..     154     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.9e-06
        PH_8  18 fFvLdlksstlsYyrddnssalrgkiplslaiisaneekreiiidsGaevWeLkasn 74 
                 +Fv + + s l  ++++  + lrg+ pl+ +i sa +e+r  + d    +W+L+  n
  CCE30214.1 157 YFVQETSLSILYIFQTR--KYLRGRSPLRDSIFSAPSERRSQSTDQKSVLWQLIYAN 211
                 78888888888888765..67********************************8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2616.96
//
Query:       CCE30215.1  [L=152]
Description: uncharacterized protein CPUR_04063 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-46  157.7   0.0    2.2e-46  157.5   0.0    1.0  1  Cupin_5   Cupin superfamily (DUF985)


Domain annotation for each model (and alignments):
>> Cupin_5  Cupin superfamily (DUF985)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5   0.0   1.3e-50   2.2e-46       2     140 ..       9     138 ..       8     139 .. 0.93

  Alignments for each domain:
  == domain 1  score: 157.5 bits;  conditional E-value: 1.3e-50
                 HHHHHTT-EEBTTSSEEEEEEE.SSEEE.CSS.STC.CES-EEEEEEEE.TTBEEEEEEE.SSEEEEEEEEES-EEEEEESTT.SCEEEEEESS-TTTT CS
     Cupin_5   2 eliaklnLephpegGyfretdrseltvpsskledgkeRsasTaIyyllt.sgevsalhrv.ksdevwhyhaGrpLrlvllhad.grvetvvlGpdvaag 97 
                 ++i++lnL+phpe+G+f+et+r+      +k  +++ R+ sT Iyyll+ +   s++hrv ++ evwhy+ G+pLrl+l+ +d + +++vvlGpdv ag
  CCE30215.1   9 DIINALNLKPHPEKGFFAETFRD------PK--ASGGRAPSTYIYYLLEgEAGLSHWHRVlDAVEVWHYYCGAPLRLSLSWNDgKPTRDVVLGPDVCAG 99 
                 79********************8......33..3455***********************9********************96478889********** PP

                 EBSEEEE-TTSEEEEEESSSSTSSEEEEEEEESSC--GGGEEE CS
     Cupin_5  98 eklqlvVpagkwkaaellgddeeeylLvsctvaPGFefedfel 140
                 +++q++V++g+w+ a++lgd    ++Lv+c+vaPGF+f++fe+
  CCE30215.1 100 QRPQVIVERGEWQHAQSLGD----WTLVGCSVAPGFDFNKFEM 138
                 ******************96....*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1214.44
//
Query:       CCE30216.1  [L=149]
Description: probable ribosomal protein L23a, cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-22   79.4   7.5    1.7e-22   79.4   7.5    1.8  2  Ribosomal_L23eN  Ribosomal protein L23, N-terminal domain
    2.6e-15   56.6   0.2    6.3e-15   55.3   0.2    1.7  1  Ribosomal_L23    Ribosomal protein L23
  ------ inclusion threshold ------
      0.021   14.6   0.1      0.033   14.0   0.1    1.3  1  GPW_gp25         Gene 25-like lysozyme


Domain annotation for each model (and alignments):
>> Ribosomal_L23eN  Ribosomal protein L23, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   7.5   2.8e-26   1.7e-22       2      51 .]      10      59 ..       9      59 .. 0.98
   2 ?   -3.1   0.1       1.6   9.3e+03       5       9 ..      96     100 ..      94     106 .. 0.59

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 2.8e-26
  Ribosomal_L23eN  2 kakAlkAkKavlkGthshkkrKirtsttFhrPKTLrlsRaPKYpRkSiph 51
                     ++kA+ A+KavlkG+h+ k+ K rtst+FhrPKTL+lsR+PKY Rk i h
       CCE30216.1 10 SKKAQDAAKAVLKGSHARKHVKTRTSTSFHRPKTLILSRSPKYMRKAIAH 59
                     79*********************************************987 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.6
  Ribosomal_L23eN   5 AlkAk 9  
                      A+kA+
       CCE30216.1  96 ANKAQ 100
                      55554 PP

>> Ribosomal_L23  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.2   1.1e-18   6.3e-15       2      60 ..      68     127 ..      67     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 1.1e-18
                    SEEEE--SHHHHHHHTT.E.EEEEE-SS-THHHHHHHHHHHHT--EEEEEEEEE--EBES CS
  Ribosomal_L23   2 vilkPvitEkstklaek.nkyvFeVakdanKleikkaveklFgVkVekVntlnvkgkkkr 60 
                    vi+ P+ tE ++k++e+ n++vF V+ +anK +ik  ++kl++++  k+ntl+++  kk+
     CCE30216.1  68 VIVHPLNTESAMKKMEEhNTLVFIVDVRANKAQIKTSLKKLYDIDCVKINTLIRPDGKKK 127
                    89**************9889*********************************9987775 PP

>> GPW_gp25  Gene 25-like lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   5.5e-06     0.033      50      90 ..      52      96 ..      39     100 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.5e-06
                HHHHHHHHH-TTEEEEEEEE...........CCCCTEEEEEEEEEE CS
    GPW_gp25 50 eireailrfEpRirlvsveveveeed.....edargrlrieIeatl 90
                ++r+ai+ +EpR++ ++v v++ +++     ++++++l + ++ + 
  CCE30216.1 52 YMRKAIA-HEPRLDAHRVIVHPLNTEsamkkMEEHNTLVFIVDVRA 96
                6788887.6***********98888899**9999********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1203.03
//
Query:       CCE30217.1  [L=771]
Description: related to LAMMER kinase-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-52  177.7   0.0    1.3e-51  175.5   0.0    1.9  1  Pkinase      Protein kinase domain
    3.4e-20   72.4   0.0    1.1e-19   70.7   0.0    1.8  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.012   15.0   0.2        2.9    7.1   0.0    2.4  2  Kinase-like  Kinase-like
      0.097   12.0   0.0       0.21   10.9   0.0    1.5  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5   0.0   2.9e-55   1.3e-51       1     264 []     399     737 ..     399     737 .. 0.86

  Alignments for each domain:
  == domain 1  score: 175.5 bits;  conditional E-value: 2.9e-55
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS...CTT...B--EEEEEEESSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk...hpn...ivrlyevfeekdelylvleyveggeladllerkg 93 
                 y+ +  lG+G+fGkV++a+++++++ vAvK+i+  ++  +     + E+++l++lk   h+n    ++l ++f    ++++v++++  ++++d+l+ +g
  CCE30217.1 399 YKINGLLGQGTFGKVVQARDRKRNEAVAVKIIRSVQKYRDA---SRIELRVLATLKandHDNrnrCIHLRDCFDYRGHICIVMDLLG-QSVFDFLKGNG 493
                 667889**************************999887755...4777777777776667654459*******************98.67******666 PP

                 S..--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET..............................TTEEEE-SGTTSEESSSSCSBCTTTSC CS
     Pkinase  94 s..lseeeakkiakqilegleylHskgiiHrDlKpeNiLide..............................kgelKitDFGlakelessskltsfvgt 160
                    +++++++++a+q+++++++lH+ ++iH DlKpeNiL+ e                              + e++++DFG a+  ++ +  +s+v t
  CCE30217.1 494 FvpFPNSHIQNFARQLFTSVAFLHDLNLIHTDLKPENILLAEdayqtftynrkipsssssinrqasqrrvllNTEIRLIDFGSATFQDEYH--SSVVST 590
                 5579*************************************889***************9999998888887777**********999866..9***** PP

                 GGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS.......................... CS
     Pkinase 161 seYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei.......................... 233
                 ++Y+APE++ + + s ++D+Ws+G+il+e++tg  +f+ +++        ++l ++  ++g  +++++  + +                          
  CCE30217.1 591 RHYRAPEIIMGLGWSYPCDIWSIGCILVEFFTGDALFQTHDNL-------EHLAMMEAVVGS-RMDSHLVQAVnkstrnggnpaskyfkrlrldyptpe 681
                 **************************************44433.......333333444442.2222222222333466777788899*********** PP

                 .........................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 .........................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                           ++++dll+k++ +dp +R+ta+++l+hp++
  CCE30217.1 682 ttrgsrrfvkamkhlseiipsnnqfFKNFLDLLRKIFVYDPAQRITAKQALNHPWF 737
                 ***********************999*****************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   2.5e-23   1.1e-19       4     220 ..     402     641 ..     399     658 .. 0.84

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 2.5e-23
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTT...B--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpn...ivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  +  lG+G+fGkVv+++ +    k+++ VavK++++ ++ ++ ++  l+ ++++k+ +h+n    ++l  +   +++++iv++++ + ++ +fL+ +  
   CCE30217.1 402 NGLLGQGTFGKVVQARDR----KRNEAVAVKIIRSVQKYRDaSRIELRVLATLKANDHDNrnrCIHLRDCFDYRGHICIVMDLLGQ-SVFDFLKGNGF 494
                  5679***********999....89999******7655544313333455666666677762236666677779999*******976.7889*****99 PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE..............................TTEEEE-STTTHEETTTSSEEEETTSS CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse..............................nkvvkisDfGLardiekddeyvkkeea 165
                   ++  +++ +fa q+   +++L++ +l+H dl   N+Ll+e                              n+ +++ DfG a      dey++  + 
   CCE30217.1 495 VPFPNSHIQNFARQLFTSVAFLHDLNLIHTDLKPENILLAEdayqtftynrkipsssssinrqasqrrvllNTEIRLIDFGSATFQ---DEYHS--SV 587
                  *********************************************************************************88866...55543..44 PP

                  TSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHT CS
  Pkinase_Tyr 166 klpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklke 220
                      ++ apE+++    +   D+Ws G +l E ft g+  +++ +n e l+++++
   CCE30217.1 588 VSTRHYRAPEIIMGLGWSYPCDIWSIGCILVEFFT-GDALFQTHDNLEHLAMMEA 641
                  5566899****************************.9999999999888877765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00064       2.9      14      56 ..     399     444 ..     392     462 .. 0.78
   2 ?    5.3   0.0    0.0023        10     143     180 ..     504     536 ..     477     541 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00064
  Kinase-like  14 lvrgellkkgdrsvvfevkdqetgeplavkvfllps...easkkdl 56 
                  ++   ll++g +++v++++d +++e +avk+  + +   +as+ +l
   CCE30217.1 399 YKINGLLGQGTFGKVVQARDRKRNEAVAVKIIRSVQkyrDASRIEL 444
                  5566799***********************9766542345555555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0023
  Kinase-like 143 tiarlllTlqlirlaanLqakglvhgkftvdnllldek 180
                  + ar+l T      +a L+++ l+h++++++n+ll e+
   CCE30217.1 504 NFARQLFTS-----VAFLHDLNLIHTDLKPENILLAED 536
                  556666666.....9*******************9876 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.6e-05      0.21     124     155 ..     506     537 ..     486     544 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.6e-05
         Kdo 124 lkavgrliaklhragvnHadlyaknillqqee 155
                  +++ + +a lh++++ H+dl + nill +++
  CCE30217.1 506 ARQLFTSVAFLHDLNLIHTDLKPENILLAEDA 537
                 5666678999******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5179.49
//
Query:       CCE30218.1  [L=288]
Description: uncharacterized protein CPUR_04066 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2069.31
//
Query:       CCE30219.1  [L=599]
Description: L-amino-acid oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-51  175.6   0.1    3.7e-51  174.8   0.1    1.3  1  Amino_oxidase    Flavin containing amine oxidoreductase
      5e-10   39.5   0.1    1.9e-09   37.6   0.1    2.0  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    2.6e-06   27.2   0.0    4.6e-05   23.2   0.0    2.1  2  DAO              FAD dependent oxidoreductase
     0.0023   17.1   0.0     0.0042   16.2   0.0    1.4  1  FAD_binding_2    FAD binding domain
     0.0063   15.8   0.1      0.011   15.0   0.1    1.2  1  Thi4             Thi4 family
     0.0074   15.6   0.0      0.013   14.8   0.0    1.3  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
  ------ inclusion threshold ------
      0.034   13.4   0.1      0.074   12.3   0.1    1.5  1  FAD_binding_3    FAD binding domain
       0.21   11.2   0.4       0.63    9.7   0.1    2.0  2  GalKase_gal_bdg  Galactokinase galactose-binding signature


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.8   0.1   1.7e-54   3.7e-51       1     451 [.      73     575 ..      73     576 .. 0.78

  Alignments for each domain:
  == domain 1  score: 174.8 bits;  conditional E-value: 1.7e-54
                    HHHHHHHHHHHHTT.EEEEEEESSSSSBTTS-EEEETT.....EEEESS--EEET..............TTHHHHHHHHHTTCCCCEE.EESCC.. CS
  Amino_oxidase   1 laGLaaArqLlsaG.fdVtvlEardrvGGRirtvrsdG.....ylielGamwftg..............agnpllellkelgledsls.lpdpg.. 73 
                    l+GL++   L++aG  +V+vlEa++r+GGR++t ++ G      + elGam+++               + + ++el++el+  +  +  p++   
     CCE30219.1  73 LSGLTTYLLLHQAGfTNVQVLEASNRLGGRVHTQYLTGgpwdySYQELGAMRLPVdyidpdskkkynisDTQLVFELINELNRLNGGErSPHHIkl 168
                    79***********************************66999999**********************99999********9988888856666677 PP

                    .GCEEEEETTEECC.....TTEECHHHHHHHHHHHHHHHH........CHHHHHHHHHHHHHHHHH.HHHCCCCHHHHHHHHHCHHHHH...HHHH CS
  Amino_oxidase  74 .apkrvlskggref.....pgdlspvpaewealleqgals........aellsleeklrlgleall.qktldeldldskslaesleelg...rrep 151
                      + ++ ++g ++f     p       ++++  ++q+a+         ++  ++++  ++ +++l+  ++l +++  + + +  + + g   + ep
     CCE30219.1 169 iEWIEKSDNGLQYFngirtP-------SGLPPTVKQVANQpgkynspeIHDADTKATDKKLQDSLPgNGFLLQMAKSMYKAHRQWIDGGlldGAEP 257
                    77777777666766444442.......444444443434444444446666777777777777777766777777777777666655441113333 PP

                    HHHHHHHHHHHHHHHHHHHHHHHCHTSTTTTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHH.TTTTEEEETSEEEEEEEE........ET CS
  Amino_oxidase 152 gdvevwdrliepelfaklefasglfagdpselsaklalpllwelegfggslllprgGlsqlpealae.elrgldirlntrVkeikr........eg 238
                    g  + w+ +   + + k +++s  ++    +   +++ +  + l + ++s  +++gG+s+lp a+    ++++++r+ntr  +i++        +g
     CCE30219.1 258 G--DRWSEFSFLSQYLKGSLNSTDVLDLQQDPRGSFWEYMYDGLYEDSDSWATIDGGMSRLPMAFGPlLESNNTVRFNTRIERITHsdegtkpgQG 351
                    3..368887775555555555555444334444454444555555555555555********************************6655554333 PP

                    TCEEEEETTSTEE......EESEEEE-S-HHHHHSSEEES.CCSHHHHHHHHHSEEEEEEEEEEEESSGGSGCSTSE.CECECCCEEETTTEEEEE CS
  Amino_oxidase 239 dgvtvtledgevv......eaDaVvvTvplgvlkailfsP.plpdekaeairnlgfgsvnkvilefdrkfwednalg.qgvlvseltttlgeafis 326
                     + ++ +++          + D+ +v +p+ v++  +++  +lp   ++ai nl + + +kv le+ r+fwe  ++     ++s +t+ +g  +++
     CCE30219.1 352 KKLSLLYKNNFRDaafqksTHDYAIVSAPFTVVR--QWRLpSLPATMRNAINNLVYDGNCKVGLEYSRRFWETMQNPiI-GSCSTTTDIPGIFMVC 444
                    336666665555577779****************..7776578*****************************9776323.5999999999999999 PP

                    CC....ECCCSTTTEEEEEEEEECHHHHHHHTTS...-HHHHHHHHHHHHHHHHT..GTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHH CS
  Amino_oxidase 327 sd....fpsrappgkglvllvyvggdaanelesl...sdeelvqavlrdLrklfg..eevpepkatlvtrWhtdplargsysyvsvgpghedydpl 413
                    ++      + +++g   ++ +y+    a+e++ +   sdee+vq+vl+ +++++g  +   + ++  +++W  dp++ g+++ +s+g +he y p+
     CCE30219.1 445 YPsynvGAGANNSGPATIMASYIDSSFAHEVARMrtmSDEEHVQYVLDAMSEIHGeeTRKLYTGKWARKCWDLDPYTAGAFANPSAG-QHELYIPV 539
                    8887764455555555699999999999998666666******************9999999999**********************.7******* PP

                    HCHHCSTTEEE.SGGGCTTTTTS.HHHHHHHHHHHHHHH CS
  Amino_oxidase 414 akpegdprlffAGehtsreypgt.vegAilSGlraAari 451
                    +++  ++++ f Gehts  y+++ +  A+ SG+r A ++
     CCE30219.1 540 YMQ-VHKNMIFIGEHTS--YTHGwISAAVDSGIRGAVQM 575
                    ***.*************..*****************987 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1   8.3e-13   1.9e-09       1      47 [.      68     115 ..      68     126 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 8.3e-13
                    EE--SHHHHHHHHHHHCCTE.EEEEE-SSSSSSGGG-EECETTCEECT CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagf.dvlllekrdrlGGraasyevpgvrvdy 47 
                    IvGaGlsGl++  lL++agf +v++le+++rlGGr+++  + g + dy
     CCE30219.1  68 IVGAGLSGLTTYLLLHQAGFtNVQVLEASNRLGGRVHTQYLTGGPWDY 115
                    9*******************77***************99886644444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.1e-08   4.6e-05       1      73 [.      65     158 ..      65     262 .. 0.79
   2 ?    2.0   0.0     0.058   1.3e+02     270     342 ..     457     563 ..     416     566 .. 0.65

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.1e-08
                 EEEEECTSHHHHHHHHHHHHTT...EEEEESSSSTT.S.SGGGSSEEEEESSSSTHHSTH...................HHHHHHHHHHHHHHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg...Vtllekgdiag.s.gaSgrnsgllhsglrylpeas...................elarlslealeelrelee 73 
                 d++i+G+G  Gl+t + L ++g   V +le+++++g + ++   ++g +  ++ +l                       +  +l++e+++el +l++
  CCE30219.1  65 DIAIVGAGLSGLTTYLLLHQAGftnVQVLEASNRLGgRvHTQYLTGGPWDYSYQELG--AmrlpvdyidpdskkkynisD-TQLVFELINELNRLNG 158
                 8*****************9999**********9999535888888888877663333..133455555555566666643.3777777777766664 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.058
                 E...............EETTCSSTSCSHHHHHHHHHHHHHHSGG....G..CG.EEEEEEEEEEETTS...SEEEEEEE........TEEEEEEEEEC. CS
         DAO 270 d...............eesgdddpevdeedidellealrklfPq....l..gd.vlrkwaGlrplpdg...lpligetp........gvkglylatGh. 334
                 +                e +  ++  dee+++++l+a++++  +    l  g+  +++w  l p + g   +p  g+++         +k++++   h 
  CCE30219.1 457 SgpatimasyidssfaHEVARMRTMSDEEHVQYVLDAMSEIHGEetrkLytGKwARKCWD-LDPYTAGafaNPSAGQHElyipvymqVHKNMIFIGEHt 554
                 3555555555444444223333369999**************774443255442445777.88853334678888885588888888889999999997 PP

                 .TTTHHHHH CS
         DAO 335 .sghGltla 342
                  + hG+ +a
  CCE30219.1 555 sYTHGWISA 563
                 777777776 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.9e-06    0.0042       1      46 [.      65     113 ..      65     124 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.9e-06
                    SEEEE--SHHHHHHHHHHHHTTT.-EEEEESSSGGGS..GGGG--S-EE CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGl.kvavvekeqefgg..atawsqGgid 46 
                    D+ ++G+Gl+GL+  l +++aG  +v v+e  ++ gg  +t++  Gg +
     CCE30219.1  65 DIAIVGAGLSGLTTYLLLHQAGFtNVQVLEASNRLGGrvHTQYLTGGPW 113
                    899**********************************999999888876 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   4.7e-06     0.011      15      56 ..      61     102 ..      53     111 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.7e-06
                 HTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4  15 yaesDvvivGaGssGLtaayylakkpdlkvailersvspGGG 56 
                   + D++ivGaG sGLt+   l ++   +v +le+s  +GG 
  CCE30219.1  61 AKKKDIAIVGAGLSGLTTYLLLHQAGFTNVQVLEASNRLGGR 102
                 5678*************98888888666899*****999995 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.8e-06     0.013     122     182 ..      40     105 ..      11     110 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.8e-06
                  TBEECCSECHHHHHHCCSS-T...SEEEEES-SHHHHHHHHHHHHHT-E.EEEEESSSSSS.TTS- CS
                  xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxx RF
  Pyr_redox_2 122 nvgklvrtldsaealklkllp...krivvvGgGyiGvElAaalaklgke.vtlveardrll.rald 182
                  +++++vr l+++++   +      k+i++vG+G+ G+ +   l+++g   v ++ea +rl  r + 
   CCE30219.1  40 QWFDGVRLLKQKQPPAADVAAakkKDIAIVGAGLSGLTTYLLLHQAGFTnVQVLEASNRLGgRVHT 105
                  4556666666666666655558889*********************9866*********9877665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.3e-05     0.074       3      28 ..      65      90 ..      63     102 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.3e-05
                   EEEEE--SHHHHHHHHHHHHTTHHEE CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvv 28
                   d++IVGaG++Gl++ llL++aG  +v
     CCE30219.1 65 DIAIVGAGLSGLTTYLLLHQAGFTNV 90
                   789*******************9855 PP

>> GalKase_gal_bdg  Galactokinase galactose-binding signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.9   4.3e+03       6      17 ..     366     380 ..     364     383 .. 0.73
   2 ?    9.7   0.1   0.00028      0.63      22      47 ..     549     573 ..     546     575 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.9
                      HHS--..-.EEEEEE CS
  GalKase_gal_bdg   6 tFgke..p.fvasAP 17 
                      +F+k+  + +++sAP
       CCE30219.1 366 AFQKSthDyAIVSAP 380
                      677775447999999 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00028
                      EE--S-TTTT-EEEEEEEEEEEEEEE CS
  GalKase_gal_bdg  22 LiGEHtDYngGfVlpmAieqdiyiav 47 
                      +iGEHt Y +G  + +A++ +i  av
       CCE30219.1 549 FIGEHTSYTHGW-ISAAVDSGIRGAV 573
                      69*********8.5789999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4380.28
//
Query:       CCE30220.1  [L=867]
Description: related to sna41 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-251  836.5   0.0   8.1e-251  833.8   0.0    2.7  1  CDC45            CDC45-like protein
  ------ inclusion threshold ------
        1.6    7.9  26.1        3.1    7.1  14.4    2.2  2  BUD22            BUD22
        1.9    8.4   6.2        3.7    7.5   6.2    1.4  1  Spore_coat_CotO  Spore coat protein CotO


Domain annotation for each model (and alignments):
>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  833.8   0.0  1.4e-254  8.1e-251       1     635 [.      26     862 ..      26     863 .. 0.95

  Alignments for each domain:
  == domain 1  score: 833.8 bits;  conditional E-value: 1.4e-254
       CDC45   1 VlilvaldvDalCAariLtsLLkkdliphkivPVsGyedlekaleelvee.....geelrsvvllnlGalvdleellelee........gvevyViDsh 86 
                 Vlilval++DalC++riLt+LLk+d+iphki+PV+Gy+dleka+++lv++     g+++++vv+l++G++vdl  ll+le+        gvev+ViD+h
  CCE30220.1  26 VLILVALEPDALCGCRILTRLLKHDYIPHKIQPVAGYSDLEKAGKQLVAPmmesqGGSGGVVVCLGVGGMVDLGPLLGLETdgeetpysGVEVWVIDAH 124
                 9*****************************************************9******************************************** PP

       CDC45  87 RPwnleNlfgss...............................eekerivvfDDgdieeeleeereayealeeeeesdeedeeeeeeddddeeeeeeee 154
                 RPwnl N+fg+                                +++++ivvfDDgdieeele+ereay+al +++++ ++          d + ++e+e
  CCE30220.1 125 RPWNLGNVFGGYplegssdvdgnsyqsrtpvgidggqvgrayeSGRGGIVVFDDGDIEEELEREREAYMALVDMPDVGDDP-G-------DLGLSDEDE 215
                 *********999*******************************99********************************6222.2.......222222333 PP

       CDC45 155 edeedeeedeeeskkkrksksdeeee.sddddersrkrrrse..........................................psakklrrqlkkerr 210
                 ed+++  ++ +++++krks+sd++e+ s+dd+ r+++rrrs+                                          psa++lrr+l ++r+
  CCE30220.1 216 EDDDTLGSTPSRAGQKRKSWSDDHEDeSSDDELRPHQRRRSNssshidsprrptqrglvtlrgpdaalwsdpmdppsaaqeppaPSARTLRRRLIRLRQ 314
                 33444555667889999*999988887999999****************************************************************** PP

       CDC45 211 kyeavlekyysqgtsygesvsslmYsLaselgredndlLWlAIvGltslelserisae...................ryerlrallrdeVrrlnpss.. 288
                 ++ea+l+kyy++g+s++e++ss+mYsLaselgredndlLWl+IvG++ +el++r+sa+                   r++rlr+llrdeVrrlnp +  
  CCE30220.1 315 EKEAILHKYYKMGSSFAEPISSMMYSLASELGREDNDLLWLTIVGVSAMELYGRSSAGiaapvrandtsrpsgwmglRGARLRQLLRDEVRRLNPPEit 413
                 ***********************************************************************************************77** PP

       CDC45 289 .......ktekietkarspddtsirlseelrllLlRhWsLydSmlhssYvaskLklWsekGrkrLhkLLAkmGvsLaqakqkYthmdlelkreLrekle 380
                        +t++i+t+ar+p+dtsirls+e+r+lL+RhWsLydSmlhs+Y++s+Lk+Wse+G krLhkLLAkmGvsLaq+kq+Ythmd++lkreLr kl 
  CCE30220.1 414 ngrvipeHTGVIPTTARNPEDTSIRLSPEPRFLLIRHWSLYDSMLHSPYLFSRLKTWSETGIKRLHKLLAKMGVSLAQCKQSYTHMDMMLKRELRAKLL 512
                 *************************************************************************************************** PP

       CDC45 381 kiapeygLddlvye...............sFvrsygyraelsAaDvvealtAlLevgkgveaksekeaeesekeseeeeeeeeeeeaeeeekeeeewvk 464
                 k+ + y+L+++v+                +Fvrs+g+ra+lsA+Dv+++++AlLevgk+v++ ++++a  +++      ++ + ee+ e  ++ eewv 
  CCE30220.1 513 KYGSLYNLEEMVPAvdtddkdragakdgwGFVRSWGWRATLSAQDVGVVIGALLEVGKQVQSGDASTAGGNSQ----LGRDGDVEEEVEFGAQTEEWVG 607
                 **********************************************************886444433333333....345566667778899******* PP

       CDC45 465 nFweAydaLdkknidlLkkglelaqslqraivrtgtsliekkqirtlrafrlavlkdgpdlelFthpaaLtkLalwllealresekekk.k..kkkkll 560
                 +FweAydaL+  nid Lk+gl++aq l+rai+rtgtsli+kkqi++lrafr++v+kdgpd+ lFthpaaLtkLalw++eal+e+e++++ k  +  +++
  CCE30220.1 608 RFWEAYDALE--NIDCLKAGLPTAQFLHRAIYRTGTSLINKKQIKHLRAFRMCVVKDGPDVTLFTHPAALTKLALWIGEALAEQERDSHgKlsQGGRGT 704
                 **********..***************************************************************************9955998889** PP

       CDC45 561 PlVlasldeergtylVvGvtgkaasggdve..................................................................... 590
                 PlV+asl+e+r +y+VvG++g++  ++  +                                                                     
  CCE30220.1 705 PLVVASLNEKRSVYIVVGTGGGGGPDT--Tflhreatkrrkaekeartktkeaarlakekiraekraakraagaqdgddeeeedaetesggsdseeese 801
                 *********************884444..345999**************************************************************** PP

       CDC45 591 ................kNrFglaFqevaeetgarvridsFessvievrkeDlakFlekLsl 635
                                  N+Fg aFq+v++et+arvridsF+++v+ev k+Dl++Fle+Ls+
  CCE30220.1 802 esegeeeeterergygLNKFGSAFQQVVSETNARVRIDSFDHCVVEVTKDDLGGFLESLST 862
                 ***********************************************************97 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.8   0.00075       4.5     206     261 ..     179     260 ..     139     279 .. 0.54
   2 ?    7.1  14.4   0.00051       3.1     148     204 ..     740     812 ..     729     854 .. 0.37

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00075
       BUD22 206 eedeeaeerelaqydglla.............sddeded.............eyneetdeesseesdssdssesaseseses 261
                 ++ ee+ ere ++y +l++             sd+++ed             + ++ +d+ ++e+sd++ + ++  +s+s+s
  CCE30220.1 179 GDIEEELEREREAYMALVDmpdvgddpgdlglSDEDEEDddtlgstpsragqKRKSWSDDHEDESSDDELRPHQRRRSNSSS 260
                 3334444555555555555666777888888855555554466666655554222333333333222222222222222222 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00051
       BUD22 148 kkkkkkkkkkkkkkeeee................eeesdkeeesedsedeekeeseddeeeeeededdedaee 204
                 k++k++k++++k+ke+++                + ++d ++e+e++ ++e+  s+++ee+ee++ ++e++e+
  CCE30220.1 740 KRRKAEKEARTKTKEAARlakekiraekraakraAGAQDGDDEEEEDAETESGGSDSEEESEESEGEEEETER 812
                 3333333333333333332222222222232222111111111111111122222222222222222222222 PP

>> Spore_coat_CotO  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.2   0.00061       3.7      38     108 ..     740     810 ..     716     836 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00061
  Spore_coat_CotO  38 qaaakekkdeaeekkpekaveeeveqekkkeaaePaeqeeeekaeeeekkeeeeqkeeeeekqetvea.ekP 108
                      +  ++ek+  ++ k+ ++ ++e++  ek++ a+  a +++ + +eee+ + e  ++  eee +e  +  e+ 
       CCE30220.1 740 KRRKAEKEARTKTKEAARLAKEKIRAEKRA-AKRAAGAQDGDDEEEEDAETESGGSDSEEESEESEGEeEET 810
                      223333333333333344444445443333.44444444444444444444444433333333322221222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (867 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1160  (0.0646996); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                       138  (0.00769703); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.45
# Mc/sec: 5742.75
//
Query:       CCE30221.1  [L=190]
Description: probable regulator of phosphatidylinositol-4-OH kinase protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-26   87.5  12.9    2.2e-08   33.1   0.2    4.9  5  EF-hand_1     EF hand
    3.4e-25   88.3   9.3    3.5e-16   59.4   1.2    3.0  3  EF-hand_7     EF-hand domain pair
    3.9e-25   85.6   4.5    1.5e-06   27.7   0.1    5.2  5  EF-hand_6     EF-hand domain
      6e-18   63.5  14.2    3.5e-05   23.1   0.1    4.6  5  EF-hand_5     EF hand
      2e-16   59.6  11.6    1.3e-05   25.0   1.3    3.9  3  EF-hand_8     EF-hand domain pair
    4.2e-09   36.3   8.6     0.0039   17.1   0.2    4.0  4  EF-hand_4     Cytoskeletal-regulatory complex EF hand
    1.1e-05   25.7   0.8     0.0025   18.1   0.1    3.0  3  EF-hand_9     EF-hand domain
    0.00071   19.9   2.8       0.87    9.9   0.3    3.1  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
      0.017   15.0   3.4        0.5   10.3   0.1    3.7  5  EF-hand_10    EF hand
      0.024   13.5   0.1        2.2    7.0   0.1    2.1  2  DUF1679       Protein of unknown function (DUF1679)
       0.13   12.6   2.2        8.9    6.7   0.0    3.6  3  EF-hand_14    EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.96   1.6e+03      16      27 ..      21      32 ..       8      34 .. 0.76
   2 ?    5.1   0.0     0.012        19      14      27 ..      40      53 ..      40      55 .. 0.87
   3 !   27.7   0.2   7.1e-10   1.2e-06       3      27 ..      66      90 ..      64      92 .. 0.90
   4 !   33.1   0.2   1.3e-11   2.2e-08       2      28 ..     101     127 ..     100     128 .. 0.92
   5 !   27.4   0.4   8.4e-10   1.4e-06       2      25 ..     149     172 ..     148     175 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.96
                EEEHHHHHHHHH CS
   EF-hand_1 16 kIdfeEfkellk 27
                + d++E++++ k
  CCE30221.1 21 HFDKKELQQWYK 32
                568889988766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.012
                SSEEEHHHHHHHHH CS
   EF-hand_1 14 dGkIdfeEfkellk 27
                +G +++eEf+++ +
  CCE30221.1 40 SGMLSKEEFQKIYR 53
                799*******9976 PP

  == domain 3  score: 27.7 bits;  conditional E-value: 7.1e-10
                HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellk 27
                + +F++fD+D++G Idf+Ef+ +l+
  CCE30221.1 66 DYVFNVFDTDKSGSIDFKEFICALS 90
                679*****************99885 PP

  == domain 4  score: 33.1 bits;  conditional E-value: 1.3e-11
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 l+++F+++D DgdGkI+++E+++++++
  CCE30221.1 101 LDWAFQLYDIDGDGKISYDEMLQIVEA 127
                 89********************99875 PP

  == domain 5  score: 27.4 bits;  conditional E-value: 8.4e-10
                 HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkel 25 
                 +++iFr++DkD +G +d+eEfke 
  CCE30221.1 149 VRKIFRMMDKDENGSLDLEEFKEG 172
                 79********************97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00012      0.19      38      71 .]      19      53 ..       5      53 .. 0.78
   2 !   31.9   0.3   8.1e-11   1.3e-07      16      69 ..      40      88 ..      39      90 .. 0.85
   3 !   59.4   1.2   2.2e-19   3.5e-16       2      68 ..      99     171 ..      98     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
   EF-hand_7 38 gsklsdeelellfkefDtdk.dGvisfdEFlklyr 71
                  +++++el+++ k f +d+ +G +s +EF+k+yr
  CCE30221.1 19 STHFDKKELQQWYKGFLKDCpSGMLSKEEFQKIYR 53
                45667899********999988***********97 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 8.1e-11
   EF-hand_7 16 dgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                +g+l+kee+++++r++f     g+++s    +++f+ fDtdk+G+i+f EF  +
  CCE30221.1 40 SGMLSKEEFQKIYRQFF---PFGDPSS--FADYVFNVFDTDKSGSIDFKEFICA 88
                699*************9...5555533..466*******************976 PP

  == domain 3  score: 59.4 bits;  conditional E-value: 2.2e-19
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee......lellfkefDtdkdGvisfdEFlk 68 
                 +kl +aF+++D dgdg+++++e+l+++++i+ + g ++kl+++e      ++++f+++D+d +G+++++EF++
  CCE30221.1  99 DKLDWAFQLYDIDGDGKISYDEMLQIVEAIYKMVGSMVKLPEDEdtpekrVRKIFRMMDKDENGSLDLEEFKE 171
                 799*******************888******9997777777766666667*********************87 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.26   4.2e+02      17      27 ..      22      32 ..      16      35 .. 0.83
   2 !    8.7   0.0    0.0011       1.8      14      28 ..      40      54 ..      36      61 .. 0.87
   3 !   27.7   0.1   9.2e-10   1.5e-06       3      27 ..      66      90 ..      64      96 .. 0.92
   4 !   22.2   0.0   5.2e-08   8.5e-05       5      27 ..     104     126 ..     104     133 .. 0.91
   5 !   22.8   0.1   3.3e-08   5.4e-05       2      24 ..     149     171 ..     148     175 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.26
   EF-hand_6 17 idaeElrkalr 27
                 d++El+++++
  CCE30221.1 22 FDKKELQQWYK 32
                699*****997 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0011
   EF-hand_6 14 dGkidaeElrkalrk 28
                +G +++eE++k++r+
  CCE30221.1 40 SGMLSKEEFQKIYRQ 54
                8************96 PP

  == domain 3  score: 27.7 bits;  conditional E-value: 9.2e-10
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalr 27
                +++F+ fD+d++G+id++E++ al+
  CCE30221.1 66 DYVFNVFDTDKSGSIDFKEFICALS 90
                589********************98 PP

  == domain 4  score: 22.2 bits;  conditional E-value: 5.2e-08
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 aF+l+D dgdGki+++E+ ++  
  CCE30221.1 104 AFQLYDIDGDGKISYDEMLQIVE 126
                 7*****************99865 PP

  == domain 5  score: 22.8 bits;  conditional E-value: 3.3e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk 24 
                 +r++F+++Dkd +G++d eE++ 
  CCE30221.1 149 VRKIFRMMDKDENGSLDLEEFKE 171
                 79*******************85 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.7   6.1e+03      17      23 ..      23      29 ..      23      29 .. 0.82
   2 !    7.0   0.0    0.0026       4.2      13      24 ..      40      51 ..      40      52 .. 0.88
   3 !   21.4   0.3   7.4e-08   0.00012       3      21 ..      66      85 ..      64      87 .. 0.91
   4 !   23.1   0.1   2.1e-08   3.5e-05       4      24 ..     104     124 ..     101     125 .. 0.87
   5 !   19.5   0.4   2.9e-07   0.00047       2      23 ..     150     171 ..     149     173 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.7
                -HHHHHH CS
   EF-hand_5 17 skeELkt 23
                +k EL++
  CCE30221.1 23 DKKELQQ 29
                7899986 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0026
                SSCE-HHHHHHH CS
   EF-hand_5 13 DGkIskeELktl 24
                +G +skeE++++
  CCE30221.1 40 SGMLSKEEFQKI 51
                699******985 PP

  == domain 3  score: 21.4 bits;  conditional E-value: 7.4e-08
                H.HHHHH-SS-SSCE-HHHH CS
   EF-hand_5  3 d.tFqaiDlNgDGkIskeEL 21
                d +F+ +D++++G I++ E+
  CCE30221.1 66 DyVFNVFDTDKSGSIDFKEF 85
                669****************9 PP

  == domain 4  score: 23.1 bits;  conditional E-value: 2.1e-08
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                 +Fq  D +gDGkIs +E  ++
  CCE30221.1 104 AFQLYDIDGDGKISYDEMLQI 124
                 6****************8775 PP

  == domain 5  score: 19.5 bits;  conditional E-value: 2.9e-07
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 ++ F+++D++  G ++ eE+k+
  CCE30221.1 150 RKIFRMMDKDENGSLDLEEFKE 171
                 678*****************96 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   1.3   7.7e-09   1.3e-05       2      49 ..      40      86 ..      39      90 .. 0.78
   2 !   18.6   0.2   7.3e-07    0.0012      25      50 ..      98     123 ..      96     127 .. 0.89
   3 !   21.1   0.3   1.2e-07    0.0002       8      50 ..     126     171 ..     125     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 7.7e-09
   EF-hand_8  2 kgkItreelrrilril...glkkglseee.vdilfrefDtdgdGkisfeEFc 49
                +g +++ee+++i+r +   g      ++  +d +f+ fDtd++G i+f+EF+
  CCE30221.1 40 SGMLSKEEFQKIYRQFfpfG-----DPSSfADYVFNVFDTDKSGSIDFKEFI 86
                67789999999995442322.....334459********************7 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 7.3e-07
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFcv 50 
                 e+++d+ f + D+dgdGkis++E ++
  CCE30221.1  98 EDKLDWAFQLYDIDGDGKISYDEMLQ 123
                 6899*******************876 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 1.2e-07
   EF-hand_8   8 eelrril.rilglkk..glseeevdilfrefDtdgdGkisfeEFcv 50 
                 e  ++++ ++++l++  ++ e+ v+ +fr +D d++G +++eEF +
  CCE30221.1 126 EAIYKMVgSMVKLPEdeDTPEKRVRKIFRMMDKDENGSLDLEEFKE 171
                 66788888999999999999999*********************87 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.045        74      22      70 ..       4      53 ..       1      60 [. 0.75
   2 !    9.2   0.1    0.0007       1.1      47      71 ..      67      91 ..      61      94 .. 0.87
   3 !   17.1   0.2   2.4e-06    0.0039      41      83 ..      97     138 ..      89     146 .. 0.85
   4 !   10.6   0.1   0.00025      0.41      41      65 ..     145     169 ..     138     174 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.045
   EF-hand_4 22 ednkltgdkvapvlknskleedklekiwd..ladidedgkldfeefciamr 70
                +++kl++d++  + k++++++++l++ ++  l d    g+l  eef  + r
  CCE30221.1  4 SQSKLSQDQLVELQKSTHFDKKELQQWYKgfLKDCP-SGMLSKEEFQKIYR 53
                578999999999999999999999987753366654.47888888876665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0007
   EF-hand_4 47 kiwdladidedgkldfeefciamrl 71
                 ++++ d d+ g++df+ef+ a+ +
  CCE30221.1 67 YVFNVFDTDKSGSIDFKEFICALSV 91
                578999*************999865 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 2.4e-06
   EF-hand_4  41 eedklekiwdladidedgkldfeefciamrlifdlvngeikdv 83 
                  edkl+  ++l did dgk+ ++e+  ++  i+ +v     ++
  CCE30221.1  97 MEDKLDWAFQLYDIDGDGKISYDEMLQIVEAIYKMVGSM-VKL 138
                 4799******************************99654.445 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00025
   EF-hand_4  41 eedklekiwdladidedgkldfeef 65 
                 +e+++ ki+ + d de+g+ld+eef
  CCE30221.1 145 PEKRVRKIFRMMDKDENGSLDLEEF 169
                 578899******************9 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0         1   1.7e+03      36      64 ..      26      54 ..      14      56 .. 0.67
   2 !   18.1   0.1   1.5e-06    0.0025       2      62 ..      67     125 ..      66     129 .. 0.88
   3 !    7.9   0.1    0.0024       3.9       3      59 ..     104     170 ..     102     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1
   EF-hand_9 36 eLeelakelDPdgedasvdldtflrvmre 64
                eL++++k +  d   + + ++ f+++ r+
  CCE30221.1 26 ELQQWYKGFLKDCPSGMLSKEEFQKIYRQ 54
                78888887654444556778888877765 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.5e-06
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvm 62 
                  vF+v+Dt+k G +  ++ i  L  +  +   e +L+   +++D dg  +++  d  l+++
  CCE30221.1  67 YVFNVFDTDKSGSIDFKEFICALSVTS-RGRMEDKLDWAFQLYDIDGD-GKISYDEMLQIV 125
                 68*********************7655.599**************999.999999888876 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0024
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaq...........dpeeseLeelakelDPdgedasvdldtfl 59 
                  F+++D++  G++   +++++ +a  +            d++e ++ +  +++D d++ +s+dl+ f+
  CCE30221.1 104 AFQLYDIDGDGKISYDEMLQIVEAIYKMvgsmvklpedeDTPEKRVRKIFRMMDKDEN-GSLDLEEFK 170
                 59999999999998877777666543322223555555577788999999***98888.999999997 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1     0.004       6.5      44     111 ..      15      86 ..       2      88 .. 0.67
   2 !    9.9   0.3   0.00053      0.87      51      86 ..      96     131 ..      90     172 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.004
  SPARC_Ca_bdg  44 eeeknlke.ckepvawkFsklDtnsdkvlsksELaplraplvkleh...CikpflescDadkdkkislkEwc 111
                   e +k+++   ke  +w    l     ++lsk+E ++++ ++ ++       +  ++  D+dk ++i+ kE++
    CCE30221.1  15 ELQKSTHFdKKELQQWYKGFLKDCPSGMLSKEEFQKIYRQFFPFGDpssFADYVFNVFDTDKSGSIDFKEFI 86 
                   3344444404444455555555558999**********999998651114567899**************96 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00053
  SPARC_Ca_bdg  51 eckepvawkFsklDtnsdkvlsksELaplraplvkl 86 
                   ++++++ w F+  D + d+ +s  E+ ++ + + k+
    CCE30221.1  96 RMEDKLDWAFQLYDIDGDGKISYDEMLQIVEAIYKM 131
                   578999*******************99998888776 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         4   6.5e+03      37      48 ..      21      32 ..      18      34 .. 0.71
   2 ?    0.6   0.0      0.32   5.3e+02      35      49 ..      40      54 ..      36      55 .. 0.87
   3 ?    1.9   0.0      0.13     2e+02      21      43 ..      63      85 ..      61      87 .. 0.87
   4 ?   -2.1   0.0       2.3   3.8e+03       1      10 [.     115     124 ..     115     128 .. 0.75
   5 ?   10.3   0.1    0.0003       0.5      24      45 ..     150     171 ..     144     175 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4
  EF-hand_10 37 rLegeEieeFyk 48
                  + +E+++ yk
  CCE30221.1 21 HFDKKELQQWYK 32
                567788888886 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.32
  EF-hand_10 35 sgrLegeEieeFykl 49
                sg L  eE+++ y++
  CCE30221.1 40 SGMLSKEEFQKIYRQ 54
                7999*****999985 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.13
  EF-hand_10 21 eYAekLFkkcDkSksgrLegeEi 43
                ++A  +F   D+ ksg+++ +E+
  CCE30221.1 63 SFADYVFNVFDTDKSGSIDFKEF 85
                6899999999*******998886 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 2.3
  EF-hand_10   1 kmsfkEvkrl 10 
                 k+s++E+ ++
  CCE30221.1 115 KISYDEMLQI 124
                 8899998665 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 0.0003
  EF-hand_10  24 ekLFkkcDkSksgrLegeEiee 45 
                 +k+F+  Dk ++g+L+ eE++e
  CCE30221.1 150 RKIFRMMDKDENGSLDLEEFKE 171
                 79*****************987 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0014       2.2     329     366 ..      25      59 ..      16      95 .. 0.89
   2 ?    4.9   0.0    0.0062        10     168     199 ..     115     146 ..     106     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0014
     DUF1679 329 elLeqyyetflkaledngeepytleqLkdsYklyfplm 366
                 + L+q+y+ flk +    +   + e+ ++ Y+ +fp +
  CCE30221.1  25 KELQQWYKGFLKDC---PSGMLSKEEFQKIYRQFFPFG 59 
                 569***********...46799**************86 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0062
     DUF1679 168 nikadelipvlkaiAtlqalslslseeekksa 199
                 +i+ de++++++ai ++    ++l+e+e +  
  CCE30221.1 115 KISYDEMLQIVEAIYKMVGSMVKLPEDEDTPE 146
                 6899*********************9987644 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.52   8.5e+02      54      71 ..      34      51 ..       6      56 .. 0.64
   2 ?    6.7   0.0    0.0055       8.9       2      27 ..      65      90 ..      64      96 .. 0.92
   3 ?    2.6   0.1      0.11   1.7e+02      54      72 ..     155     173 ..     100     185 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.52
  EF-hand_14 54 eaeesetleldretFkkc 71
                  +++ +  l++e+F+k+
  CCE30221.1 34 FLKDCPSGMLSKEEFQKI 51
                344555588999999987 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0055
  EF-hand_14  2 edllfdlfkdeetdklsvakllkaLa 27
                +d +f++f++++++++ +++++ aL+
  CCE30221.1 65 ADYVFNVFDTDKSGSIDFKEFICALS 90
                79*******************99986 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.11
  EF-hand_14  54 eaeesetleldretFkkcv 72 
                  + + e+ +ld e+Fk+  
  CCE30221.1 155 MMDKDENGSLDLEEFKEGS 173
                 2344455667777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1433.56
//
Query:       CCE30222.1  [L=100]
Description: uncharacterized protein CPUR_04070 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.54   10.5   7.4        3.1    8.1   2.6    2.4  2  DIM       DIM protein


Domain annotation for each model (and alignments):
>> DIM  DIM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2    0.0018        31       1      19 [.       1      20 [.       1      23 [. 0.84
   2 ?    8.1   2.6   0.00017       3.1      14      35 ..      58      80 ..      51      81 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0018
         DIM  1 MkcLsLlaflllll.alaaa 19
                Mk+  +++fl+  l a++a+
  CCE30222.1  1 MKFQAVTTFLVAALpAVLAV 20
                99999*******77777776 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00017
         DIM 14 lalaaanal.pGkViINGkCkdC 35
                +al +   l +G V++ G C+ C
  CCE30222.1 58 CALTSPPTLsAGGVVVDGICVGC 80
                6665555559***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 782.11
//
Query:       CCE30223.1  [L=271]
Description: uncharacterized protein CPUR_04071 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-10   38.6   0.0      0.001   18.8   0.0    2.1  2  Methyltransf_16  Lysine methyltransferase
     0.0018   18.1   0.0     0.0031   17.4   0.0    1.3  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.1e-07     0.001      13      94 ..      67     147 ..      56     156 .. 0.81
   2 !   17.6   0.0   2.6e-07    0.0024      99     150 ..     174     228 ..     166     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.1e-07
  Methyltransf_16  13 tgesigrkvWdaavvlvkylekklakelganelsklsvlELGsGtGlvGlavaell.peakviltDleellellkknielnkn 94 
                       g   g+++W+   + + +l+ +++  + +  +   +vlELG  +G+  l + + +   a+ +l+D++ +++ll +ni +n++
       CCE30223.1  67 AGGTTGAVLWKVTPLFANWLASASNPLFTTILTPSSTVLELG--CGISPLNALAIApRIANYVLSDQNYVQKLLSQNILANQS 147
                      4567899***************88777888889999*****7..7777776655553578999***************99874 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.6e-07
  Methyltransf_16  99 kvkvevLdWgee.leedllek..eevDlilaaDcvYledslelLvkvLkellkke 150
                      ++ +++LdW+++ + ++l e+  + +D ++a DcvY+   +++ v++  +l ++e
       CCE30223.1 174 NMIFRALDWEQDqVSPELAEPasSYFDAVVATDCVYNYALVDPFVQTCVDLRNHE 228
                      566899***98625566655411579********************999988765 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.5e-07    0.0031      13      93 ..      90     209 ..      80     216 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.5e-07
  Methyltransf_23  13 lerllpk.lraggrvLdiGcGtG.illevlrengfsvtgvDlspeaveiae.....................................kakkaq 67 
                       + l+++ l +++ vL++GcG    ++  ++++ +++++ D++ ++  + +                                      a  ++
       CCE30223.1  90 SNPLFTTiLTPSSTVLELGCGISpLNALAIAPRIANYVLSDQNYVQKLLSQnilanqssstapsasrgsnkrrlgktvtppppqnmifRALDWE 183
                      5566755578999**********7799999************9988888776666677776666667666666666666666666666666666 PP

  Methyltransf_23  68 kdqfdeqeaaepqgkfdlIvlrevle 93 
                      +dq+  + a++ + +fd +v++++ +
       CCE30223.1 184 QDQVSPELAEPASSYFDAVVATDCVY 209
                      66666666666666*******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2177.57
//
Query:       CCE30224.1  [L=105]
Description: uncharacterized protein CPUR_04072 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 891.69
//
Query:       CCE30225.1  [L=3584]
Description: non-ribosomal peptide synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.2e-195  649.2   0.0      3e-68  230.4   0.0    3.2  3  AMP-binding    AMP-binding enzyme
   9.4e-102  341.0   0.0    1.8e-49  168.7   0.1    5.3  5  Condensation   Condensation domain
      2e-39  133.7   3.2    1.7e-13   50.7   0.1    3.7  3  PP-binding     Phosphopantetheine attachment site
    0.00014   22.8   0.1        3.6    8.6   0.0    4.2  4  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.4   0.0   6.7e-72     3e-68       4     422 ..     307     706 ..     304     707 .. 0.84
   2 !  203.6   0.0   8.8e-64   3.9e-60       2     423 .]    1396    1803 ..    1395    1803 .. 0.84
   3 !  211.7   0.0     3e-66   1.3e-62       3     423 .]    2507    2906 ..    2505    2906 .. 0.86

  Alignments for each domain:
  == domain 1  score: 230.4 bits;  conditional E-value: 6.7e-72
                  HHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEET CS
  AMP-binding   4 qaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliat 101
                  ++  +p+  a+v+   +  lTY+e+d+ ++ lA+ Lr +Gv++g  Va++l+++   v+ ++a+lkaG++   l+p+++  +l+ +++d +++ ++  
   CCE30225.1 307 SCCSRPNSQAVVS--WDGCLTYNEMDRLSSHLAQRLRDAGVEPGVFVALCLDRCKWAVIGIVAVLKAGGAFCALDPSYPVSRLKKMCQDLGITSVL-- 400
                  5567888889988..6778******************99*********************************************************.. PP

                  CTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCC CS
  AMP-binding 102 vdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfkl 199
                  + + ++++      + +  ++v vld d+l  e+ l +++e +         + ++p+d++y i+TSG+TGkPKG++++h++++a +     ++ f++
   CCE30225.1 401 TVKSNIQH------ASPLASKVFVLD-DNLHSESALSSTKEHA-------ARSCVSPHDPVYAIFTSGSTGKPKGIIVEHASFSACALGS--KEAFSF 482
                  54444333......234445678888.5555555665555333.......334799*****************************99995..566999 PP

                  TTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBH CS
  AMP-binding 200 keddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggeplsp 297
                  +++d+vl++ ++a+++++ +e+l++l++Gatv ++++ a+l+   l +++++l+vt  +++P+v++               +++sl ++ l+ge++++
   CCE30225.1 483 EPRDRVLHFSSYAFDASV-VEILAPLIAGATVAIPSERARLE--DLPRAMTELGVTWAFLTPTVARLYRPT----------QMPSLNTLCLVGEAVNA 567
                  9****************8.***************99998844..4789****************9998444..........7899***999******* PP

                  HHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTT.SCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE... CS
  AMP-binding 298 ellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeet.gepvpdgeeGellvrgpgvmkgYlkkpeataeafds... 391
                  + +++++++   +++ gY ++E++++ +    + ++++  + G  +p + + ivD ++ ++++p g  Gel + g  v++gY  +p      +++   
   CCE30225.1 568 SDVKAWSSK---RLISGYNPAECCPAGIS-G-PINHNMSRRLGSTFPSQVAWIVDSKDhEKLLPVGAIGELAIEGSVVARGYIHDPTCSDP-LTPfvv 659
                  ***999998...59*************83.3.4444677789*****9999999865415677********************99755322.222444 PP

                  ..............T.CCEEEEEEEEEEE.TTSEEEEEEECCCEEEE CS
  AMP-binding 392 ..............e.grwlrTGDlgrld.edGyleivgRkkdlikl 422
                                  +r + TGDl+r+d +dG+++++gRk++++k+
   CCE30225.1 660 kppswlrrfrtnvnRgNRIYLTGDLARRDcDDGSVHYLGRKDNQVKI 706
                  568999999999973467**********9567*************98 PP

  == domain 2  score: 203.6 bits;  conditional E-value: 8.8e-64
                   HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESE CS
  AMP-binding    2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakv 97  
                   +++++ +pd++a+     + ++TY+el++r++rlA   r +  +++++V+++  +s+  vva la+lka+a+ ++l+ t +++ l+ i+++ ++ +
   CCE30225.1 1396 QAKCQAQPDATAIDA--WDGRVTYGELERRAERLADLVRGHVSEPDQVVVLYFTKSWLTVVAQLAVLKASAAFITLDITQPPHYLRRIIAALGPIL 1489
                   678999*******55..7889*****************97466***************************************************** PP

                   EEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHH CS
  AMP-binding   98 liatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkl 193 
                   ++  +++el ++++e ++ +     v+ +d+d+l+ ++   +++  +        ++ +   +l+y++ TSGTTG+PK +m  h+++++n++ l  
   CCE30225.1 1490 IL--TSEELYSAAEELQE-D--EVPVMAVDKDNLSHATAIASQT--S-------SSACTVDCELMYVVATSGTTGMPKIIMTNHQSFMTNASPL-- 1569
                   **..88777444444443.3..3345677877777663333333..2.......222344789***************************8885.. PP

                   HHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEE CS
  AMP-binding  194 etrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslrlv 288 
                   ++r +++++++v+++  +++++ + +e ll+ll+G+++++++  ++  ++++++ i ++k++ + g P+ + +ll+ +            + ++++
   CCE30225.1 1570 TNRMGITAESRVFQFCGYSFDLMI-AEHLLTLLAGGCICIPSLHNR--DNRFAASIVEFKAN-WIGSPSSVLQLLDpQ----------TVPTVKTI 1651
                   67788889***************7.***************886665..4678889999****.556666666666733..........5778***9 PP

                   EEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE.CHCTTTCTSTTS-BEE-TTEEEEEE-...TTTSCBEETTSEEEEEEEETTS-SEBTT CS
  AMP-binding  289 llggeplspellrffralfgeevlegYGlTEttgvvtv.lpleedkkklgsvGkplpgvevkivD...eetgepvpdgeeGellvrgpgvmkgYlk 380 
                   + gge+l + l++++ ++   ++l++YG++E+t++++v ++ + d++ ++ vG+   g+ + ivD   ++++ pvp g eGel + g+ + +gYl+
   CCE30225.1 1652 MQGGERLLQGLVDRWASHA--RLLNAYGPSECTMIMSVsDTVRPDTRDVQNVGFS-TGCICWIVDaqhPDKLLPVPIGAEGELIIEGHILSRGYLG 1744
                   99****************6..49*************7765555666678899*99.56677777622245677889******************** PP

                   -HHHHHHHEEE...............T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding  381 kpeataeafds...............e.grwlrTGDlgrldedGyleivgRkkdliklr 423 
                   + ++t+ af +               +  r +rTGD++r + dG++ +v Rk+ ++k+r
   CCE30225.1 1745 DADKTNAAFLAlpgwlkdfradrgqsQgHRVYRTGDMVRQNSDGSISFVRRKDAQVKVR 1803
                   **********889999********974456***************************96 PP

  == domain 3  score: 211.7 bits;  conditional E-value: 3e-66
                   HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding    3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98  
                   +q+ + pd + +     +  +TYr+lde +++l+  + ++G++++ ++ i+l+++    va+la+lk G   v +++t +a++l  i+++ ++ v+
   CCE30225.1 2507 QQCLRCPDSPSVCA--WDGNFTYRQLDELSSALSEEIVRKGAGPEVTIPIVLEKTRWTPVAMLAVLKSGSSFVLMDSTHPAARLGAIVQAIGPPVI 2600
                   56677888888866..67789*****************99******************************************************** PP

                   EETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHH CS
  AMP-binding   99 iatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkle 194 
                   i  v+++  +k++          ++ v++ +++l  e l +++   +++   +++  l++ + ay+++TSG+TGkPKG++++h++l+++++ +   
   CCE30225.1 2601 I--VSAQTRSKVATF--------STDVVEVGNWLAREILVAKQ---HVT---RQNGLLQATNAAYLVFTSGSTGKPKGAIVEHASLSTAAKYM--A 2678
                   *..755442322222........23345555666555555554...333...2455799******************************8886..4 PP

                   HCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEE CS
  AMP-binding  195 trfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvll 290 
                    r  +++ ++vl++ + a+++ + +e+l++l  G++v++++++++   + l+++ e+ kv+    +P+v++ +     ++      ++++l+++++
   CCE30225.1 2679 SRLHIDSASRVLQFSSHAWDIPV-TEVLVTLRMGGCVCVPSEEER--TGNLAKASERMKVNWALWTPTVARLFK----PE------EFPHLETLVF 2761
                   555566789*************8.***************998877..56799*****************99983....33......7899****** PP

                   ESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBE.ETTSEEEEEEEETTS-SEBTT-HHHH CS
  AMP-binding  291 ggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepv.pdgeeGellvrgpgvmkgYlkkpeat 385 
                   +ge+ls++ l+ + +++  ++++gYG++E++ + tv ++ ++  ++  +G p  g+ + +v+ +t e++ p+g  Gel++ gp v +gYl++p + 
   CCE30225.1 2762 AGEALSATDLETWCDRV--RLVQGYGPAECSLISTVTDPLTRSDNPRCIGLP-SGCVAWVVNRDTHELLaPPGAIGELVLEGPIVGRGYLGDPGRA 2854
                   ****************8..49*************874444555567789***.788888999999998867************************* PP

                   HHHEEE............T.CCEEEEEEEEEEE.TTSEEEEEEECCCEEEET CS
  AMP-binding  386 aeafds............e.grwlrTGDlgrld.edGyleivgRkkdliklr 423 
                   a+af+s            +  r+++TGDl+r +   G l +vgR +d++k+r
   CCE30225.1 2855 ASAFISppawlmrlrgsgSsIRLYKTGDLVRQHvSSGLLTFVGRNDDQVKVR 2906
                   *****8899*******984578*********97477**************96 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.18     8e+02     218     272 ..      62     117 ..      46     124 .. 0.80
   2 !    8.4   0.1   0.00017      0.76     384     456 ..     216     285 ..     202     286 .. 0.90
   3 !  113.0   0.0   3.2e-36   1.4e-32       2     437 ..     962    1353 ..     961    1359 .. 0.85
   4 !  168.7   0.1   3.9e-53   1.8e-49       2     453 ..    2066    2483 ..    2065    2485 .. 0.86
   5 !   43.3   0.0   4.4e-15     2e-11      33     346 ..    3174    3472 ..    3157    3509 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.18
                   --SS---S-EEEEEE.EE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEE CS
  Condensation 218 pakrsfkadrlsikl.deeteeklrklakeqgvtlndvllaalgllLskytgqddi 272
                    a +s  a ++++k+ d++  +kl+++ ++ +    +v+  a++++L +y  ++++
    CCE30225.1  62 AATYSGPAITQVVKVnDKTSGSKLNNAVNDRDLYAAEVFKGAWAVVLGTYLAKSHV 117
                   555555556777788789999*****************************998887 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00017
                   .E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----HHHHHHH CS
  Condensation 384 eaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklselkllsdaekekL 456
                   e ++ ++yd+ ++      ++++ ++Y+ +  +e++ + ++ +++ +l+ +++ p+q l+++++ s+ +++ L
    CCE30225.1 216 ETKQLTQYDCMVHFAS---DMRCMLSYRDQFMSESQARHLAATMRVVLSSIVSAPQQSLADVDMCSSLDYQTL 285
                   4677899999999988...9**********99999*******************************9999877 PP

  == domain 3  score: 113.0 bits;  conditional E-value: 3.2e-36
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    +d+yp +++Q  +  ++  + +++ay+  +++kl++++d +rl +a+    + h +LRt++++ ++g+ +Qv+ ++ ++  e+ e+sd ++s   
    CCE30225.1  962 EDIYPCTHLQ--QSLMASTDHNPNAYVAILAFKLKSGIDRTRLGRAWHIACSGHAILRTRLVQTDTGDCYQVVVKKPPHWTETNEVSD-DGS--- 1050
                    799*******..888889999******************************************99*************9999999994.344... PP

                    HHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHH CS
  Condensation   97 eaieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdl 191 
                     +i    +     +f L   pL++ +l +       l++++HH + DG+Sl++l+ +l  +Y      +el+  + +  k+y++      + +  
    CCE30225.1 1051 -TIPLSCT-----SFGLG-YPLIQLHLTS-----NRLFVAMHHALYDGWSLPVLIGELDLAY------RELSVRRLPCLKNYVKY-----TMDSA 1122
                    .4888888.....78884.4999998888.....889*************************......33333333334566655.....22344 PP

                    HHHHHHHHHHHH......S---B.SS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCS CS
  Condensation  192 ekeeaYWseqlegelpvlqLpkd.karpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgResei 285 
                      ++++W+  l+  ++ + +p+    + + +   a ++s+ l            +  +vtl +  ++a++++ ++ytg +d+++g++ sgR  ++
    CCE30225.1 1123 DAAASFWRAELQD-ADPVHFPEPsGLDYKPQPCAAMTVSVPL---------ANSRCRNVTLATEIQFAWAMTVYTYTGCKDVIFGLISSGRAAPV 1207
                    6789********8.7778999996556666667777788888.........44456789999999****************************** PP

                    TCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECE CS
  Condensation  286 kdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsv 380 
                     +ie+m+G      Plr+ ++++ ++ e++ +++ ++++      ++ + +++   +   ++ +  f++v+  e    +  eee   ++++++  
    CCE30225.1 1208 AQIESMLGPTFACTPLRVSIDPQGKLGEALDDLQYTVVEQSLFVHFGAQAIRQLGPNAA-AACN--FQTVLAVEADGPDAGEEEGCWFTRYDFL- 1298
                    ***************************************************66655444.4455..*******985555666666777777777. PP

                    E...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHS CS
  Condensation  381 ssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqvieh 437 
                      +e  + s+ +l+l  + ++++ +i+  Y +++ de ++ r+l +++++l q+ ++
    CCE30225.1 1299 --SEVASFSSHALTLRCKLSTRGVEINAVYDKAVVDERQMGRILAQFEHILTQIHSN 1353
                    ..335679999******************************************9876 PP

  == domain 4  score: 168.7 bits;  conditional E-value: 3.9e-53
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE...TTEEEEEE-TT-----EEEE-T..TSSSH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfle.eengepvQvileerevelevleisdleesee 95  
                    +++yp sp+Q+++++ +  +++++   +q  +  +   d++r+++a++e+++rh +LRt fl+  e+    Qv+l++ + ++ v        ++e
    CCE30225.1 2066 ERIYPCSPIQQGILMSHARNPHHYDEMIQWRVAGDVPCDISRMQRAWREVVSRHGILRTLFLQvSEDSFLDQVVLKNYSPDISVYT------DRE 2154
                    578************99988776666667777777778999********************9866788888****99999993332......222 PP

                    HHHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--.HHHHHHHHHHHHCSH CS
  Condensation   96 eeaieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktp.Ykdyaeweqqylesk 189 
                    +    e+ +     pf+ ++ p  +  +f+++++ + + l++HH +vDG+Sl i+ rdl  +Yq  +      ++ ++p Y++y+  +q+    +
    CCE30225.1 2155 DG---EAYR-----PFE-DSVPMHQLLVFQRSADDVIVSLRIHHALVDGISLHIIRRDLELAYQGCL-----HELAEPPaYHEYISYLQE---TR 2232
                    22...3334.....554.5679999**************************************4333.....344445559999999655...56 PP

                    HHHHHHHHHHHHHH......S.---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT CS
  Condensation  190 dlekeeaYWseqlegelpvlq.LpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes 283 
                     +++ e+YW+ +l+g  ++ + +p+ +++pa + +    ++++l     ++l ++++e++  ++ vl+ +++++ ++y  +dd+ +g ++sgR  
    CCE30225.1 2233 LRKSPEEYWKSYLRG--ATGAlFPAVQDEPARDGMYFGAVEVEL--GPSANLAQFCEEHKLGVTVVLHVVWAIIVQRYAATDDVCFGYMTSGRHV 2323
                    66799**********..444559999**********99999999..66789******************************************** PP

                    CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEE CS
  Condensation  284 eikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselkl 378 
                    ++++ e+mvG   n+l  r++++ + ++ +++ + +ed  ++++hq    ++Lv+ l    + s   Lf++ ++  n    ++ ee  ++s+l l
    CCE30225.1 2324 SVVNAENMVGPLFNMLIGRVKLAYHLSLLSAMYTYQEDFINSLDHQH---QSLVETLHSIGS-SAGDLFNTLITVVN----DQPEEHASRSALRL 2410
                    *********************************************98...566666666665.5566********88....77777777777777 PP

                    CEE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----HHHH CS
  Condensation  379 svssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklselkllsdaek 453 
                      + v+  + s+y ++l++  +++k++++++Y+tsl ++ + ++++++++ +l++++e p++ l+ l++l+++++
    CCE30225.1 2411 VGDAVQ--SRSEYPITLNILNRTDKMKMQLSYHTSLLSSVSANTIAKTFRFVLQRTLERPHELLRALQVLDEDQM 2483
                    755555..99***********************************************************999875 PP

  == domain 5  score: 43.3 bits;  conditional E-value: 4.4e-15
                    EEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHHHHHHHHTC..--SCCCS-SEEEEEEE CS
  Condensation   33 lklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaieefaqkdlqe..pfdLekgpLfraalfk 125 
                    l++++ + +e+l+ a   +++ h +LRt f+   +++ vQ  l + +++ + ++ +   e e  +a+e f ++ + +  +f +    L  + +++
    CCE30225.1 3174 LYFSKPVASEALKAAASRVVKLHSILRTAFVPL-EDTYVQLTLCDFDLPSQEIQTN---EAEVSAAMELFCRDAADKtaGFGVPVTKL--ILMLD 3262
                    67789999**********************976.8999999988777777766666...33335678888886433300333332222..33455 PP

                    SSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S---B.SS--- CS
  Condensation  126 iaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekeeaYWseqlegelpvlqLpkd.karpa 219 
                    ++ +   lll++    +DGvS+  ++ d  ++ +++ +  e p+p+   Y+d+a      +  ++  +    W+++l+g+  +  +p++ +++  
    CCE30225.1 3263 RQGDCPSLLLRLQRAQFDGVSVMRIMADWRSALEHASCSWE-PAPSLD-YADFALG----RVAQNTPDVFGMWRDVLQGSSMTYLVPQQeYISMT 3351
                    6677779**************************99999888.777777.*******....555666788899*******6665557777555555 PP

                    SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--SS-EEEEEEEEE--TT-BHHHH CS
  Condensation  220 krsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvGlFvntlPlridvkeaktfsel 314 
                    +r   +  ++ ++       +     + g t+ +v  aa++++Ls+ t+++d+ +   + +R  + ++i++mvG  +n +P+r+ ++++ + s+l
    CCE30225.1 3352 DRAHAERLVTSSC------DIPLPEPAPGYTMATVAKAAWAICLSRETQSEDLLFLQLVRNRHLALDGIDKMVGCSLNYVPVRVPLRRDWKTSDL 3440
                    5555544444444......566777899******************************************************************* PP

                    HHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-S CS
  Condensation  315 ikrvkedllkaephqgypleeLvkdlelqrke 346 
                    ++ + ++  +++     +  +Lv ++ ++ + 
    CCE30225.1 3441 LHWLHQQHIRTMTGHTADWPDLVAKSTTWSSD 3472
                    ****99999999**************999873 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.9   1.6e-13   7.4e-10       3      64 ..     852     913 ..     851     914 .. 0.94
   2 !   41.8   0.0   2.3e-14     1e-10       2      64 ..    1951    2012 ..    1950    2014 .. 0.96
   3 !   50.7   0.1   3.7e-17   1.7e-13       2      65 ..    3044    3106 ..    3043    3108 .. 0.97

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 1.6e-13
  PP-binding   3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgv.eiplsdlfehptlaela 64 
                 lr+l+a++l++p  eid+d+++f lG+DSl+a++lla   ee g+ +i   d+f hptl +l+
  CCE30225.1 852 LRDLFAQALDLPRTEIDLDSNFFQLGGDSLSAMRLLALALEE-GIsSIAYQDIFSHPTLTQLV 913
                 89***********************************99999.555*************9986 PP

  == domain 2  score: 41.8 bits;  conditional E-value: 2.3e-14
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaela 64  
                  ++ +++a+vl++++  +++++++f lG+DS+++++++aa  ++ g+++++ d+fe++ ++ la
  CCE30225.1 1951 EIHAIWARVLQIEPHTFGVHDSFFRLGGDSISSMQVAAACGAA-GISVTVKDMFEYRIIRKLA 2012
                  689****************************************.************9998886 PP

  == domain 3  score: 50.7 bits;  conditional E-value: 3.7e-17
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                  +l++lv +vl++pl +i++d+dlf lG+DSl+a++l++a +++ g+e+++  +f+h+ +++la+
  CCE30225.1 3044 ELQQLVGQVLQRPLHSISLDEDLFRLGMDSLTAMTLASAARRR-GWEVSVPIIFQHSRVSDLAR 3106
                  799****************************************.******************98 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.21   9.5e+02      24      76 .]     739     813 ..     715     813 .. 0.68
   2 !    8.6   0.0    0.0008       3.6      47      76 .]    1886    1915 ..    1823    1915 .. 0.87
   3 !    7.6   0.0    0.0017       7.5       2      76 .]    2915    3006 ..    2914    3006 .. 0.68
   4 ?   -2.3   0.0       2.1   9.4e+03      27      54 ..    3025    3053 ..    3018    3057 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.21
                    TTS.---EEEEEE---...---............HHHHHHHHHHH.......HT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C  24 vkG.ealvafVvlkdg...sea............leeeLkahvrk.......elgpyavpkkvvfvdelpktrsGK 76 
                    v G  al+a++ +++    s +            + ++L+a++++       +l++++vp+    v  +p  +sGK
     CCE30225.1 739 VSGhTALIALIMPDQRldnS-DkvsksllieledVSQDLRAQLASaasklrlALPSHMVPSVYLPVRHFPTLKSGK 813
                    55545677777774312221.12344556666667777777775556667779*******9999999999999998 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0008
                     HHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   47 kahvrkelgpyavpkkvvfvdelpktrsGK 76  
                     +  + +++++y+vp+ +v v+e+p+ +sGK
     CCE30225.1 1886 QTALQDRMPAYMVPDLFVPVSEFPREASGK 1915
                     5567889**********************9 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0017
                     HHHHHHSSTTEEEEEEE-----TTS---EEEEEE---...---.................HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS CS
  AMP-binding_C    2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg...sea.................leeeLkahvrkelgpyavpkkvvfvdelpktrsG 75  
                     vE  ++++   +++ V  v+    G +l+a+V   +g   s +                 l+++  +++r+++++y+ p+ +  ++ lpk ++G
     CCE30225.1 2915 VEGQVAQVFPGSQVIVLVVKR-SSGAVLAALVLQ-NGedrS-SagetanlfpppslafaaLAKAAFSKLRETMPTYMIPSIILPLSYLPKAATG 3005
                     555555555666666663333.367555555543.343331.134445667777788888999999999************************* PP

                     - CS
  AMP-binding_C   76 K 76  
                     K
     CCE30225.1 3006 K 3006
                     9 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.1
                     ---EEEEEE---.---HHHHHHHHHHHHT CS
  AMP-binding_C   27 ealvafVvlkdg.sealeeeLkahvrkel 54  
                     ea va  v ++  s+a+e+eL++ v + l
     CCE30225.1 3025 EAYVAASVSHRPaSTAMEAELQQLVGQVL 3053
                     455555554323134599*****999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.42u 0.30s 00:00:01.72 Elapsed: 00:00:00.72
# Mc/sec: 15043.46
//
Query:       CCE30226.1  [L=3584]
Description: non-ribosomal peptide synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.6e-196  653.0   0.0    5.5e-69  232.8   0.0    3.2  3  AMP-binding     AMP-binding enzyme
   1.4e-103  347.0   0.0      1e-48  166.2   0.2    5.3  5  Condensation    Condensation domain
    1.9e-40  137.1   1.5    3.5e-13   49.7   0.1    3.6  3  PP-binding      Phosphopantetheine attachment site
    7.2e-05   23.7   0.2       0.78   10.8   0.0    4.1  4  AMP-binding_C   AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
      0.042   13.6   0.0        3.8    7.2   0.0    3.2  3  WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransfer


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.8   0.0   1.5e-72   5.5e-69       4     422 ..     307     706 ..     304     707 .. 0.85
   2 !  201.7   0.0   4.2e-63   1.5e-59       2     423 .]    1396    1803 ..    1395    1803 .. 0.85
   3 !  215.0   0.0   3.7e-67   1.3e-63       4     423 .]    2508    2906 ..    2505    2906 .. 0.86

  Alignments for each domain:
  == domain 1  score: 232.8 bits;  conditional E-value: 1.5e-72
                  HHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEET CS
  AMP-binding   4 qaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliat 101
                  ++  +p+  a+v+   +  lTY+e+d+ ++ lA+ Lr +Gv++g  Va++l+++   v+ ++a++kaG++   l+p+++  +l+ +++d ++++++  
   CCE30226.1 307 SCCSRPNSQAVVS--WDGCLTYNEMDRLSSHLAQRLRDAGVEPGVFVALCLDRCKWAVIGIVAVMKAGGAFCALDPSYPVSRLKEMCRDLGITIVL-- 400
                  5567888889988..6778******************99*********************************************************.. PP

                  CTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCC CS
  AMP-binding 102 vdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfkl 199
                  + + +++++       +  ++v  ld d++++e+ l ++ es+++       ++++p+d++y ++TSG+TGkPKG++++h++++a + s  +++ +  
   CCE30226.1 401 TVKSNIQHA------SPLASKVFALD-DDVYFESALSSAHESASW-------VSVSPHDPVYAVFTSGSTGKPKGIIMEHASFSACALSS-VKPLQI- 482
                  544443332......33444577777.788999888887766643.......3589***************************9998884.555544. PP

                  TTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBH CS
  AMP-binding 200 keddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggeplsp 297
                   ++d+vl+++++a+++++ +e+l++l++Gatv ++++ a+l+   l +++++lk+t  +++P+v++    +          +++ l+++ lgge++++
   CCE30226.1 483 ADQDRVLHFASYAFDASV-IEILAPLIAGATVAIPSERARLE--DLPRAMTDLKATWAFLTPTVARLYRPE----------QMPTLKTLCLGGEAVNA 567
                  589**************8.***************99998844..4789****************9988444..........6889***999******* PP

                  HHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBE.ETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE... CS
  AMP-binding 298 ellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepv.pdgeeGellvrgpgvmkgYlkkpeataeafds... 391
                  + +r ++++   +++ gY ++E+++  +  pl++  +++ s G  ++ + + ivD+++ e + p g  Gel + gp v++gY  +   t++   +   
   CCE30226.1 568 SDTRSWSSK---NLISGYNPAECCPLGISGPLND--RMPRSLGSTFASQTAWIVDPKDHEKLlPAGAIGELAIEGPVVARGYIHD--VTCSDPSTpfv 658
                  ********9...499************8455444..58889*************9976554449*******************87..55554433456 PP

                  ...............T.CCEEEEEEEEEEE.TTSEEEEEEECCCEEEE CS
  AMP-binding 392 ...............e.grwlrTGDlgrld.edGyleivgRkkdlikl 422
                                   +r + TGDl+rld +dG+++++gRk+d++k+
   CCE30226.1 659 vklppwlrrfratanRgNRIYLTGDLARLDcDDGSVHYLGRKDDQVKI 706
                  6788999999999863467**********9567*************98 PP

  == domain 2  score: 201.7 bits;  conditional E-value: 4.2e-63
                   HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESE CS
  AMP-binding    2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakv 97  
                   +++++ +pd++a+     +  +TY+el++r+++lA   rs+  k++++V+++  +s+  vva la+lkaGa+ ++l  + + + l+ ++++ ++ +
   CCE30226.1 1396 QAKCQAQPDATAIDA--WDGCVTYGELERRAEKLAGLVRSHVSKPDQVVVLYFSKSWLTVVAQLAVLKAGAAFITLEISQPVHYLQRVISALGPVL 1489
                   678899*******55..6778**************99998566***************************************************** PP

                   EEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHH CS
  AMP-binding   98 liatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkl 193 
                   ++  ++++l +++++ ++       v+ +d+d+l++++    ++  ++       ++ + + dl+yii TSGTTG+PK Vm  h+++++n++ l +
   CCE30226.1 1490 VL--TSEDLFSAAEDLQD-N--AVPVMAVDKDDLSDATART-SQ--AS------SSACTVECDLMYIIATSGTTGMPKIVMTDHQAFMTNASPL-M 1570
                   **..87777444444333.2..3346678888877663222.22..21......23345699****************************8887.4 PP

                   HHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEE CS
  AMP-binding  194 etrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslrlv 288 
                   +   ++++d++v+++  +++++ + +e +l+ll+G+++++++  ++  ++++++ i +l+++ ++g P+ + +ll+ +            + ++++
   CCE30226.1 1571 N-GLGITSDSRVFQFCGYSFDLLI-VEHFLTLLAGGCICIPSLHNR--NNRFAASIVELEAN-WVGSPSSVLQLLDpQ----------TVPTVKTI 1651
                   4.456689***************7.***************887766..5678899999****.888888888888834..........5678***9 PP

                   EEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE...CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBE...ETTSEEEEEEEETTS-SEB CS
  AMP-binding  289 llggeplspellrffralfgeevlegYGlTEttgvvtv...lpleedkkklgsvGkplpgvevkivDeetgepv...pdgeeGellvrgpgvmkgY 378 
                   + +ge+l++ l++++ +++  +++++YG++E+++ +     +++++d   ++  G++  g  + iv+ et e +   p g eGel + g+++ +gY
   CCE30226.1 1652 MQAGERLQQGLVDRWASHV--RLINAYGPAECSVGALArdtVRPDTD--DVQNLGFA-TGSVCWIVNAETSEKLlpvPIGAEGELIIEGHTLSRGY 1742
                   99****************8..49*************55544444444..57779999.68888999988887544449****************** PP

                   TT-HHHHHHHEEE...............T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding  379 lkkpeataeafds...............e.grwlrTGDlgrldedGyleivgRkkdliklr 423 
                   l++ ++t+ +f                 +  r + TGD++r + dG++ +v Rk+ ++k+r
   CCE30226.1 1743 LGDADKTNASFLRlpnwlrdfradrgqsQgHRVYLTGDIVRQNSDGSMSFVRRKDAQVKIR 1803
                   ***********97889999*******974456***************************96 PP

  == domain 3  score: 215.0 bits;  conditional E-value: 3.7e-67
                   HHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding    4 qaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99  
                   q+ + pd + +     +  +TYr+ld+ +++l+  + ++G++++ ++ i+l+++    va+la+lk G   v +++t +a++l  i++d++  v+i
   CCE30226.1 2508 QCIRCPDSPSVCA--WDGNFTYRQLDDLSSALSEEIVRKGAGPEVTIPIVLEKTRWTPVAMLAVLKSGSSFVLMDSTHPAARLGAIIQDVGHPVII 2601
                   5666788888855..66789*****************99********************************************************* PP

                   ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHH CS
  AMP-binding  100 atvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslklet 195 
                     v+++  +k++       +  ++ v++ +++l  e l ++++        +++  l++ + ay+++TSG+TGkPKG++++h++l+++++ +    
   CCE30226.1 2602 --VSAQTRSKVA-------TF-STDVVEVGDWLAREILVAKQQIT------RQNGLLQATNAAYLVFTSGSTGKPKGAIVEHASLSTAAKYM--AS 2679
                   ..6544422222.......22.22345555566665665555333......2455799******************************8886..45 PP

                   CSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEE CS
  AMP-binding  196 rfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllg 291 
                   r  +++ ++vl++ + a+++ + +e+l++l  G++v++++++++   + l+++ e+ kv+    +P+v++ +     ++      ++++l++++++
   CCE30226.1 2680 RLHIDSASRVLQFSSHAWDIPV-TEVLVTLRMGGCVCVPSEEER--TGNLAKASERMKVNWALWTPTVARLFK----PE------EFPHLETLVFA 2762
                   55566789*************8.***************998877..56799*****************99983....33......7899******* PP

                   SS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBE.ETTSEEEEEEEETTS-SEBTT-HHHHH CS
  AMP-binding  292 geplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepv.pdgeeGellvrgpgvmkgYlkkpeata 386 
                   ge+ls++ l+ + +++  ++++gYG++E++ + tv ++ ++  ++  +G p  g+ + +v+ +t e++ p+g  Gel++ gp v +gYl++pe+ a
   CCE30226.1 2763 GEALSAADLETWCDRV--RLIQGYGPAECSLISTVTDPLTRSDNPRCIGLP-SGCVAWVVNRDTHELLaPPGAIGELVLEGPIVGRGYLGDPERAA 2855
                   ***************8..49*************874444555567789***.788888999999998867************************** PP

                   HHEEE............T.CCEEEEEEEEEEE.TTSEEEEEEECCCEEEET CS
  AMP-binding  387 eafds............e.grwlrTGDlgrld.edGyleivgRkkdliklr 423 
                   +af+s            +  r+++TGDl+r +   G l +vgR +d++k+r
   CCE30226.1 2856 SAFISppawlmklrgsgSsIRLYKTGDLVRQHvSSGLLTFVGRNDDQVKVR 2906
                   ****8899*******984578*********97477**************96 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.071   2.6e+02     233     272 ..      78     117 ..      69     125 .. 0.86
   2 !    9.0   0.1   0.00014      0.48     380     456 ..     211     285 ..     148     286 .. 0.92
   3 !  122.4   0.0   5.4e-39   1.9e-35       2     437 ..     962    1353 ..     961    1360 .. 0.85
   4 !  166.2   0.2   2.9e-52     1e-48       2     453 ..    2066    2483 ..    2065    2485 .. 0.86
   5 !   41.0   0.0   2.7e-14   9.8e-11      33     346 ..    3174    3472 ..    3157    3510 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.071
                   EE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEE CS
  Condensation 233 deeteeklrklakeqgvtlndvllaalgllLskytgqddi 272
                   d++  +kl+++ + ++++  +v+  a++++L +y  ++++
    CCE30226.1  78 DKDSGSKLKNVINGKDISASEVFKGAWSVVLGTYLAKSHV 117
                   788899****************************998887 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00014
                   EE....E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----HHHHHHH CS
  Condensation 380 vssve.aeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklselkllsdaekekL 456
                   +++ e + + ++yd+ ++      ++++ ++Y+ +  +e++ + ++ +++ +l+ +++ p+q l+++++ s+ +++ L
    CCE30226.1 211 MTILEeNDQLTQYDCMIHFAS---DMRCMLSYRDQFMSENQARHLAATMRVVLSSIASAPQQSLADVDVCSSLDYQTL 285
                   45677788999*******998...9**********999*********************************9998876 PP

  == domain 3  score: 122.4 bits;  conditional E-value: 5.4e-39
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    +d+yp +++Q  +  ++    +++ay+  +++kl++++d +rle+a+    + h +LRt++++ ++g+ +Qv+ ++ ++  e+ e+sd ++s   
    CCE30226.1  962 EDIYPCTHLQ--QSLMASTAHNPNAYVAILAFKLKSGVDRTRLERAWHIACSGHAILRTRLVQTDTGDCYQVVVKKPPHWTETNEVSD-DGS--- 1050
                    799*******..5556666669*****************************************99*************9999999994.333... PP

                    HHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHH CS
  Condensation   97 eaieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdl 191 
                      ++++++     +f L + pL++ +l +     + l++++HH + DG+Sl+ l+ +l  +Y +l   +    p  ++Y +ya            
    CCE30226.1 1051 --TNSLLRT----SFGLGR-PLIQLHLTT-----DQLFVAMHHALYDGWSLPMLIGELDLAYRELSVRRL---PCLKNYVKYAMD--------SA 1122
                    ..5788885....999964.9*****999.....99**************************44443333...334558888877........33 PP

                    HHHHHHHHHHHH......S---B.SS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCS CS
  Condensation  192 ekeeaYWseqlegelpvlqLpkd.karpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgResei 285 
                      ++++W+  l+  ++ + +p+  + + + +   a ++s+ l               +vtl +  ++a++++ ++ytg +d+++g++ sgR  ++
    CCE30226.1 1123 DAAASFWQAELQD-ADPVHFPAPsSLDYKPQPCAAMTISVPL---------VNSPRRNVTLATEIQFAWAMTVYTYTGCKDVIFGLISSGRAAPV 1207
                    57899*******8.5667777775577777888878888888.........33345689999999****************************** PP

                    TCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECE CS
  Condensation  286 kdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsv 380 
                     +ie+++G      Plr+ ++++ ++ e++ +++ ++++      ++ + +++   +   ++ +  f++v+  e    +  eee s ++++++  
    CCE30226.1 1208 AQIESILGPTFACTPLRVSIDPQGKLGEALDDLQYTIVEQSMFVHFGAQAIRQLGPNAA-AACN--FQTVLAVEADGPETGEEEGSWFTRYDFL- 1298
                    ****************************************9**********66655444.4455..9******994444556666666666666. PP

                    E....E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHS CS
  Condensation  381 ssve.aeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqvieh 437 
                       +   + s+y+l+l  + ++++ +i+  Y +   de ++ r+l +++++l q+ ++
    CCE30226.1 1299 ---SdVASFSSYALTLRCKLSTRGVEINAVYDKLMVDERQMGRILAQFEHILTQIHSN 1353
                    ...4466899********************************************9887 PP

  == domain 4  score: 166.2 bits;  conditional E-value: 2.9e-52
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE...TTEEEEEE-TT-----EEEE-T..TSSSH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfle.eengepvQvileerevelevleisdleesee 95  
                    +++yp sp+Q+++++ +  +++++  ++q  +  + + d++r+++a++e+++rh +LRt fl+  e+    Qv+l++ + ++ v   +  e+ e 
    CCE30226.1 2066 ERIYPCSPIQQGILMSHARNPHHYDEVIQWKVAGDVSCDISRMQRAWREVVSRHGILRTLFLQvSEDSFLDQVVLKNYSPDISVCTNE--EDVE- 2157
                    789**************999887777888888888889999********************98667888889**99999999555444..2222. PP

                    HHHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--.HHHHHHHHHHHHCSH CS
  Condensation   96 eeaieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktp.Ykdyaeweqqylesk 189 
                            +     pf+ ++ p  +  +f+++++ ++++l++HH +vDG Sl i+ rdl  +Y    +g+  +++  +p Y++y+  +q+   ++
    CCE30226.1 2158 -----P-YR-----PFE-DSVPMHHLLVFQRSADDVTVYLRIHHALVDGLSLHIIRRDLELAY----QGRL-DELAQPPgYHEYISYLQE---KR 2232
                    .....2.22.....443.4558888899***********************************....6655.66677777*****99555...77 PP

                    HHHHHHHHHHHHHH......S.---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT CS
  Condensation  190 dlekeeaYWseqlegelpvlq.LpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes 283 
                     +++ ++YWs +l+g  ++ + +p+ +++pa++      ++i+l     +kl+++++e++  ++ vl+ +++++ ++y  +d++ +g ++sgR  
    CCE30226.1 2233 SRKSLQEYWSSYLQG--ATGSlFPAVQDEPASDGQYFGAVEIEL--GSIAKLTQFCEEHKLGVTVVLHVVWAIIVQRYAATDEVCFGYMTSGRHV 2323
                    8889***********..555658988888887777768888888..8899********************************************* PP

                    CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEE CS
  Condensation  284 eikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselkl 378 
                    ++ ++e++vG   n+l  r++++ + +  + + + +e+  ++++hq    ++Lv+ l    + s   Lf++ ++  n    ++ e+  ++s+l l
    CCE30226.1 2324 PVTNVENVVGPLFNMLIGRVKLAYHLSVLSTMYAYQENFINSLDHQH---QSLVETLHSIGS-SAGDLFNTLITVVN----DQPEDHVSQSALRL 2410
                    ******************************************99997...566666666665.5566********88....66666666666666 PP

                    CEE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----HHHH CS
  Condensation  379 svssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklselkllsdaek 453 
                      +sv+  + s+y ++l++  + +k++++++Y+tsl +  + +++++ ++ +l++++e+p++ l+ l +l+++++
    CCE30226.1 2411 VGDSVQ--SRSEYPITLNILNHADKIKMQLSYHTSLLSGVSANTIAKAFRFVLQRTLEQPHELLRALPVLDEDQM 2483
                    655555..999******************************************************9999998876 PP

  == domain 5  score: 41.0 bits;  conditional E-value: 2.7e-14
                    EEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHHHHHHHHTC..--SCCCS-SEEEEEEE CS
  Condensation   33 lklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaieefaqkdlqe..pfdLekgpLfraalfk 125 
                    l++++ + +e+l+ a   +++ h +LRt f+   +++ vQ  l + +++ + ++ +++e     +a+e f ++ + +  +f +    L  + +++
    CCE30226.1 3174 LYFSKPMASEALKAAASRVVKLHSILRTAFVPL-EDTYVQLTLCDFDLPSQEIQTNQAEV---SAAMELFCRDAADKtaGFGVPVTKL--ILMLD 3262
                    667889999*********************976.89999999988777777777773333...4568888886433300333333333..34467 PP

                    SSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S---B.SS--- CS
  Condensation  126 iaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekeeaYWseqlegelpvlqLpkd.karpa 219 
                    ++ + l lll++    +DGvS+  ++ d  ++ +++ +  e p+p+   Y+d+a      +  ++  +    W+++l+g+  +  +p++ +++  
    CCE30226.1 3263 RQGDCLSLLLRLQRAQFDGVSVMRIMADWRSALEHASCSWE-PAPSLD-YADFALG----RVAQNTPDVFGMWRDVLQGSSMTYLIPQEkYISMT 3351
                    7888899**************************99999888.777777.*******....555666788899*******7776668888444444 PP

                    SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--SS-EEEEEEEEE--TT-BHHHH CS
  Condensation  220 krsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvGlFvntlPlridvkeaktfsel 314 
                    +r + a+rl+ +        +     + g t+ +v  aa++++L + t+++d+ +   + +R  + ++i++mvG  +n +P+r+ ++++ + s+l
    CCE30226.1 3352 DR-AHAERLVTSS-----CDIPLPEPAPGYTMATVAKAAWAICLARETESEDLLFLQLVRNRHLALDGIDKMVGCSLNYVPVRVPLRRDWKISDL 3440
                    44.4445544443.....3667777899******************************************************************* PP

                    HHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-S CS
  Condensation  315 ikrvkedllkaephqgypleeLvkdlelqrke 346 
                    ++ + ++  +++  +  +  ++v ++ ++ + 
    CCE30226.1 3441 LHWLHQQHIRTMAGDTADWPDVVAKSTTWSSD 3472
                    ****99999999*************9999873 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.3   4.6e-13   1.6e-09       3      64 ..     852     913 ..     850     914 .. 0.94
   2 !   46.3   0.0   1.1e-15     4e-12       2      64 ..    1951    2012 ..    1950    2014 .. 0.97
   3 !   49.7   0.1   9.9e-17   3.5e-13       2      65 ..    3044    3106 ..    3043    3108 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 4.6e-13
  PP-binding   3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgv.eiplsdlfehptlaela 64 
                 l++l+a+ l++p  +id+d+++f lG+DSl+a++lla   ee g+ +i   d+f hptl+e++
  CCE30226.1 852 LQALFAQSLDLPCTRIDLDSNFFQLGGDSLSAMRLLALALEE-GIsSIAYQDIFSHPTLREIV 913
                 899**********************************99999.555***************97 PP

  == domain 2  score: 46.3 bits;  conditional E-value: 1.1e-15
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaela 64  
                  ++ +++a+vl++++  +++++++f lG+DS++ ++++aa  ++ g+++++ d+fe++t++ la
  CCE30226.1 1951 EISAIWARVLQIEPHTFGVHDSFFRLGGDSISGMQVAAACGAA-GISVTVKDMFEYRTIRKLA 2012
                  6889***************************************.****************997 PP

  == domain 3  score: 49.7 bits;  conditional E-value: 9.9e-17
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65  
                  +l++lv +vl++pl +i++d+dlf lG+DSl+a+++++a +++ g+e+++  +f+h+ l++la+
  CCE30226.1 3044 ELQQLVGQVLQRPLHSISLDEDLFRLGMDSLTAMTIASAARRR-GWEVSVPIIFQHSRLSDLAR 3106
                  799****************************************.******************98 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.8   6.5e+03      42      76 .]     776     813 ..     726     813 .. 0.67
   2 !   10.8   0.0   0.00022      0.78      46      76 .]    1885    1915 ..    1819    1915 .. 0.66
   3 !    7.6   0.0    0.0022       7.8       2      76 .]    2915    3006 ..    2914    3006 .. 0.67
   4 ?   -1.4   0.0       1.4   4.8e+03      25      55 ..    3023    3054 ..    3016    3058 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.8
                    HHHHHHHHHHH...HT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C  42 leeeLkahvrk...elgpyavpkkvvfvdelpktrsGK 76 
                     +++L + + k   +l++++vp+    +  +  t+sGK
     CCE30226.1 776 FRANLASAASKlrlALPSHMVPSVYLPIRHFSTTKSGK 813
                    44444444433555999999999999888999999998 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00022
                     HHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   46 LkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                      +  + +++++y+vp+ +v v++lp+ +sGK
     CCE30226.1 1885 AETALQDRMPAYMVPDLFVPVSDLPREASGK 1915
                     44455779**********************9 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0022
                     HHHHHHSSTTEEEEEEE-----TTS---EEEEEE---...---.................HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS CS
  AMP-binding_C    2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg...sea.................leeeLkahvrkelgpyavpkkvvfvdelpktrsG 75  
                     vE  ++++   +++ V  v+    G +l+a+V   +g   s +                 l+++  +++r+++++y+ p+ +  ++ lpk ++G
     CCE30226.1 2915 VEGQVAQVFPGSQVIVLVVKR-SAGAVLAALVLQ-NGedrS-SagetanlfpppslafaaLAKAAFSKLRETMPTYMIPSIILPLSYLPKAATG 3005
                     555555555556666653333.366555555443.443331.134445667777788888999999999************************* PP

                     - CS
  AMP-binding_C   76 K 76  
                     K
     CCE30226.1 3006 K 3006
                     9 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1.4
                     TS---EEEEEE---.---HHHHHHHHHHHHT- CS
  AMP-binding_C   25 kGealvafVvlkdg.sealeeeLkahvrkelg 55  
                     + ea va  v ++  s+a+e+eL++ v + l 
     CCE30226.1 3023 EIEAYVAASVSHRPaSTAMEAELQQLVGQVLQ 3054
                     4556566655532323559******9998775 PP

>> WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.24   8.6e+02     133     144 ..    1077    1088 ..    1074    1109 .. 0.80
   2 ?    7.2   0.0    0.0011       3.8     129     144 ..    2181    2196 ..    2177    2252 .. 0.87
   3 ?    1.5   0.0     0.058   2.1e+02     131     160 ..    3270    3299 ..    3264    3338 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.24
  WES_acyltransf  133 lkvHHAliDGvg 144 
                      + +HHAl DG +
      CCE30226.1 1077 VAMHHALYDGWS 1088
                      67********86 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0011
  WES_acyltransf  129 iAillkvHHAliDGvg 144 
                      + ++l++HHAl+DG++
      CCE30226.1 2181 VTVYLRIHHALVDGLS 2196
                      679***********96 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.058
  WES_acyltransf  131 illkvHHAliDGvgglkllarlldldpddp 160 
                      +ll++  A  DGv++++++a + ++ ++++
      CCE30226.1 3270 LLLRLQRAQFDGVSVMRIMADWRSALEHAS 3299
                      7899999**************999877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.43u 0.31s 00:00:01.74 Elapsed: 00:00:00.51
# Mc/sec: 20969.85
//
Query:       CCE30227.1  [L=314]
Description: uncharacterized protein CPUR_04075 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-22   79.0   0.0    7.9e-22   78.6   0.0    1.2  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0   4.4e-26   7.9e-22       3     211 .]      29     230 ..      27     230 .. 0.81

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 4.4e-26
                 HHSEEEETTSS-HHHHHHHHHHHHHH......HHHCHTTCCSEEEEECEEESTTCCCEECCCHHCHHHHTTHHHHHHHHHHHHTSCEEEEEEEEEEEEE CS
        PhyH   3 edGylviegflsaeevealraeieal......ldralesgdkidfffeekaaadedglleksinkvghflhprkvadlvrailgqdvyvaavlqsmyqd 95 
                 edG+++iegfl++e+v++l+++++a        +++ +++++   f+ ++++ d    + +   +++ f+h+  +++ + + ++  ++++   + +y +
  CCE30227.1  29 EDGVAIIEGFLTPEQVQKLNKDVDAPlkadreQLKFKADKKDDPHFWLADFIPDHVARVHNLVDFSHCFRHE-ILNHELLHKICRLTFEE---SGDY-W 122
                 89************************9999976666666666666777777777555555777777778888.99999999999998863...3333.5 PP

                 ....EEE-TTTCB-EEEEE-SGGGST...EES..GCCEEEEEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTSCCCTTTGHGSCEEEE.BT CS
        PhyH  96 ....ifkqpkiGgevqpwHqDstflp...tdp..eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevk 185
                      + ++++G+  q wH+D++++p     p  +e ++++ +al+d+ +e G +++i GS k+ +++      e+           ++++++  v +k
  CCE30227.1 123 lgygAVIENGPGTTEQKWHRDQPRYPlvkEGPdaPEGMLNFFTALTDFDAETGKTQYILGSNKR-VEL-----GEP-----------DADHPIEYVGLK 204
                 566667777777777***********877333669*****************************.442.....122...........2347899***** PP

                 TTEEEEEETTSEEEE-TB.SSSXEEE CS
        PhyH 186 aGdavlfhgrllHgsgaNrsdksRra 211
                 +Gd+ + +g++ H+++ Nrsdk+Rra
  CCE30227.1 205 PGDTTIVSGKITHRGSDNRSDKMRRA 230
                 ************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2309.50
//
Query:       CCE30228.1  [L=448]
Description: uncharacterized protein CPUR_04076 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.7e-111  372.5   0.2   3.3e-111  372.2   0.2    1.0  1  Trp_DMAT  Tryptophan dimethylallyltransferase


Domain annotation for each model (and alignments):
>> Trp_DMAT  Tryptophan dimethylallyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.2   0.2  1.8e-115  3.3e-111       2     362 ..      26     382 ..      25     383 .. 0.94

  Alignments for each domain:
  == domain 1  score: 372.2 bits;  conditional E-value: 1.8e-115
                 HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTGGGC-S--ECSTC-SS--TTSTT--SEEEEEETTT.....TEEEEEE--B-TTBTSTTBTT- CS
    Trp_DMAT   2 qrfWwkttgpllaslLeeagYsveqqyehLlffrkvvvPaLGprpaskrspkwkslltddgsPiElSwnfsssgdkkptvRfaiepigplagteedpln 100
                 qr Ww++t+p++a++L++agY++++qy+hL +f+k+++P LG +p+++ +++w s+lt+ g P+ElS+n+++     ++vR+++epi++ +gte+dp+n
  CCE30228.1  26 QRLWWHSTAPMFAAMLDNAGYNIHDQYRHLGIFKKHIIPFLGVYPTKD-KERWLSILTRCGLPLELSLNCTD-----SVVRYTYEPINEVTGTEKDPFN 118
                 89*******************************************766.49*******************98.....9********************* PP

                 -CHHHHHHHHHHHH.STT---HHHHHHHHHHS--HHHHHHHHHGGGTTTS----EEEEEEEETTTEEEEEEEE-THHHHHHHT--HHHHHHHHHHHHCS CS
    Trp_DMAT 101 qqatrellerlaqlavpgvdlewfdhfkealllseeeeaklaekgekskkaksqvflafdlkkggkivlKaYffPrlkalatgqsaeelvfdairalkp 199
                 + a+++ +++laq +  g+dlewf +fk++l+l+e+e+a+l++++  ++++k+q+ la+dlk ++++ lK+Yf+P lk++atg+s+++l+fd++ +l++
  CCE30228.1 119 TLAIMASVQKLAQIQ-AGIDLEWFSYFKDELTLDESESATLQSNELVKEQIKTQNKLALDLK-ESQFALKVYFYPHLKSIATGKSTHDLIFDSVFKLSQ 215
                 *************97.*************************99999****************.69********************************88 PP

                 ..GCCHHHHHHHHHHHHHC......E----EEEEEEEEESS-CCC--EEEEEEESEESHHHHHHHHTTTTT-SH.HHHHHHHHHHHHH.HHCT---EE- CS
    Trp_DMAT 200 .geelepalklleeylesr......pkkeklrpellsiDcvdpsksRlKiYlrtpstsfdsvrdvmtLGGrlddeeteeglellrelwklllglpegfr 291
                  +++++pa+++l +y+++r      ++   l+++lls+D++dp+ksR+KiYl ++ +s++ ++d++tLGG++ d++t++gl++lrelw  ll++p g+ 
  CCE30228.1 216 kHDSIQPAFQVLCDYVSRRnhsaesDQHIALHARLLSCDLIDPAKSRVKIYLLEKTVSLSVMEDLWTLGGQRVDASTMDGLDMLRELW-SLLKVPTGHL 313
                 8****************99****99889999*****************************************888*************.9999999777 PP

                 ..........---...............EEEEEEE-TT-SS-EEEEEEE-T..TS-HHHHHHHHHHHHHHCT-HHHHHHHH CS
    Trp_DMAT 292 ..........plpeksktekdesslssgllfyfelkpgkelPepKvYipvrhygenDlaiaraleeffeklgwgeaaesye 362
                           +           ++ +   + +++l++++++Pep+vY+ v+  g+nD++i +al+ ff+++g +++a++y 
  CCE30228.1 314 eypkgylelgE----------IPNEQLPSMANYTLHHNNPMPEPQVYFTVF--GMNDAEISNALTIFFQRHGFDDMAKKYR 382
                 44444333322..........2333344778********************..**************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3151.76
//
Query:       CCE30229.1  [L=290]
Description: uncharacterized protein CPUR_04077 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-07   30.8   0.1    9.6e-06   25.3   0.0    2.4  2  NmrA            NmrA-like family
    4.1e-07   30.1   0.0    1.9e-05   24.6   0.0    2.8  2  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0    0.0071        64       1      32 [.       3      34 ..       3      47 .. 0.79
   2 !   25.3   0.0   1.1e-09   9.6e-06     125     232 ..     116     220 ..     114     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.0071
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt 32
                +l +G+TGr +k+++ ++ + + +  +  R +
  CCE30229.1  3 VLLTGGTGRTAKHIAGIFRQTNVPFLVASRSS 34
                6899***********99998888777766666 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 1.1e-09
                 HHHHHHHC.TS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHHHHHHHH.TTEEEEE-SEEE-HHHHHHHH CS
        NmrA 125 ieeyvral.gipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikilkdprkl.kgkriklagntlsgneivelf 221
                 i e++ ++  + yt ++++ fmenf+++     ++ +a  +d+ + ++ +n k+ ++ ++ Di+++ + +l  + +l +  +i    + l+++e+++++
  CCE30229.1 116 IHEHLDSIkDVTYTVLRPTWFMENFSTKGE---IQCEAIRRDSTVYSATENGKIPFI-SVVDIARVAACALTAE-TLkNSDHILQGPDLLTYDEVAQAL 209
                 556666665689**************9544...455555666788899999889999.******9877777665.5559999999************** PP

                 HHHHTS-EEEE CS
        NmrA 222 ekkigktvkYt 232
                 + ++g++++ t
  CCE30229.1 210 TGVLGRKITHT 220
                 *******9876 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.1e-09   1.9e-05       1     182 [.       7     183 ..       7     185 .. 0.73
   2 ?   -1.7   0.0      0.25   2.3e+03     122     148 ..     251     277 ..     234     284 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.1e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT.-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT--EEE CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvt.dvedlaealkgadaVvsalggggkdeegaknivdaakeagvkRfv 94 
                     G+tG+++++++    +  +++  +  R+++  +  e++ + + ++ +   ++ ++ + +k +++V+ +  +  + ++ +++ +d a  ++vk+fv
      CCE30229.1   7 GGTGRTAKHIAGIFRQT-NVPFLVASRSSSAGT-AENHRKFDWLDEETFpNALSVDQGMKPISVVWLCPPPLYDLATPVIKFIDFAVSQNVKKFV 99 
                     9**********988887.576655555555544.78999***99966543999****************999999999***************** PP

                     EEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHH.SSSEEEEEEE-CEE-ST--SEEEE...........ETTSS----EEEHHHHHHHH CS
  NAD_binding_10  95 lvsaigvgdevpgefgewnkellkaylaakraaeellra.sgldwTivrpggLtdepttkyrvv...........ekgepfkggsisradVAdvl 177
                     l+sa  +++   g  g+           a+ +  e+l + +++++T++rp++++++ +tk ++            +  e+ k   is  d+A+v+
      CCE30229.1 100 LLSASVIQK---G--GP-----------AMGKIHEHLDSiKDVTYTVLRPTWFMENFSTKGEIQceairrdstvySATENGKIPFISVVDIARVA 178
                     *****9994...2..22...........33455566666689***********998544444433344432222112222223478888999998 PP

                     HHHCT CS
  NAD_binding_10 178 vavld 182
                     + +l+
      CCE30229.1 179 ACALT 183
                     87776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.25
                     HHHHHHHHHHHHSSSEEEEEEE-CEE- CS
  NAD_binding_10 122 aakraaeellrasgldwTivrpggLtd 148
                     ++    e+++ +    wT v+p g+ +
      CCE30229.1 251 IKSGSEERVVSDEVKAWTGVKPRGFIN 277
                     445566777777788899999988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2063.13
//
Query:       CCE30230.1  [L=344]
Description: uncharacterized protein CPUR_04078 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-79  266.5   0.0    3.3e-79  266.2   0.0    1.0  1  Methyltransf_33  Histidine-specific methyltransferase, SAM-de


Domain annotation for each model (and alignments):
>> Methyltransf_33  Histidine-specific methyltransferase, SAM-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.2   0.0   1.8e-83   3.3e-79       2     307 ..      19     341 ..      18     343 .. 0.93

  Alignments for each domain:
  == domain 1  score: 266.2 bits;  conditional E-value: 1.8e-83
  Methyltransf_33   2 aedvlagLsskpktlpskllYDarGselFeeitelpeYyptrtEiaiLqehaaeiaaai.paatlvelGsGsseKtrlLLealeaaekeltYvp 94 
                       e++++gL+s+pktlp+ l+Y+++G+e+++++ ++p++yp r+Ei+iL++  ++ia++i p++++++lGs+++eK+ +LLealea+ek++ Y++
       CCE30230.1  19 PEQIIKGLTSQPKTLPPLLFYSNEGLEHWNHHSRQPDFYPRRQEIEILKQGGNDIARSIaPSSVILDLGSANLEKVGYLLEALEAQEKDVLYFA 112
                      579*******************************************************97888******************************* PP

  Methyltransf_33  95 lDvseeaLeealeal.aaeypsleveglvgdyedglewlaslpeaederrlvlflGssigNlepeeaaafLrklraa.l....gpgdllLlGvD 182
                      lD+s+ +L+++l+++ ++++++++++gl+g++edgl+w++++pe +d +++vl+lG +igN+++++aaafL++++++ l    ++++ +Ll++D
       CCE30230.1 113 LDISAPQLATTLKEIpSSNFRHVRFAGLHGTFEDGLRWINETPEIRDLPHCVLLLGLTIGNFSRQNAAAFLQNIANHaLtgasKNKSSILLSLD 206
                      ***************6669**********************************************************769988779******** PP

  Methyltransf_33 183 lvkdeekleaAYndsagvtaaFnlnllerinrel....gad..........fdledfehvaewnaeegriemylrsk.rdqtvrvealdltvaf 261
                      ++k ++k+++AY+++  v   F+l++l+ ++  l    + +          +++e++++ +ewn + gr+e++l  +  d+ +   ++ +++ +
       CCE30230.1 207 SCKVPTKVTRAYTSDGVVP--FALQALTYAKALLcdriD-NgidekvlscnLRPEHWHYLSEWNFALGRHEASLIPRfGDVCLG--SMLQDIIV 295
                      *************887766..************965551.144455566669999**********************8888884..44578*** PP

  Methyltransf_33 262 kagekirteiSyKyteeevrelleaaglevlkvWtdeksdfalyll 307
                      k++ek+r+++SyKy+++e ++l+ ++g++   vWt+e +d+a+y l
       CCE30230.1 296 KKEEKVRFACSYKYDAKERQKLFLDSGVDQGMVWTNEGCDVAIYEL 341
                      ******************************************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2603.11
//
Query:       CCE30231.1  [L=483]
Description: probable isoamyl alcohol oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-13   51.0   0.8    2.1e-13   50.2   0.8    1.4  1  FAD_binding_4  FAD binding domain
    8.5e-12   45.0   0.0    1.5e-11   44.2   0.0    1.4  1  BBE            Berberine and berberine like


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.8   2.4e-17   2.1e-13       6     138 ..      19     160 ..      14     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 2.4e-17
                    EESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTCSCCEEEEEETTS--EEEEET..........TTTEEEEETTSBHHHHHHHHHHHTTECSSG CS
  FAD_binding_4   6 rpeseeevaaalrlaneaglpvlvrGgGssllgqavatggvvldlsrlnrileide..........eegtatveaGvtlgdlvealaakglllgle 91 
                     ++s+ +++a +r+a++++l++++ ++G++ +g + a   + +++s l++ +++ +          ++  +t++aGv   +++ + a++g+++ l 
     CCE30231.1  19 VVRSTSDIQASVRFASRHNLRLVIKNTGHDSAGRSSAPHSFQIHTSLLQN-ISLHKnfiargsttgRGPAVTLGAGVMQWQAYVHGAKNGYTI-LG 112
                    689*****************************88888999*****87999.566665999998888899*****************7777777.69 PP

                    GGTTCGSBHHHTTTTT-.EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  92 pgsgipgtvGGaiatna.gGygsekyGlirdnvlglevvladGevvrl 138
                     ++ + g +GG++ +++ ++ +s + Gl +d+vl+++vv a+G ++++
     CCE30231.1 113 GECPTVGAIGGFLQGGGvSSIHSFTRGLAVDQVLEYQVVSAKGDLITA 160
                    99999********9877256899999******************9986 PP

>> BBE  Berberine and berberine like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   1.7e-15   1.5e-11       1      45 [.     412     456 ..     412     457 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.7e-15
                 --TTS--GGG-HHHHHHHHG.GGHHHHHHHHHHH-TT--S--TT-- CS
         BBE   1 aYvNyrdldlgkewgerYFg.gNferLvkvKtkyDPdNvFrneqsI 45 
                 +Y N  d++++ e+++rY+g +N++rL+ +K+++DP+++F    ++
  CCE30231.1 412 SYRNLGDPQEK-EFQARYWGaDNYARLAATKAAWDPSHLFMTSLGV 456
                 69*********.********99******************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3784.14
//
Query:       CCE30232.1  [L=261]
Description: related to D-arabinitol 2-dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-43  148.6   0.0    2.5e-43  148.3   0.0    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.1e-40  139.2   0.0    1.5e-40  138.8   0.0    1.2  1  adh_short        short chain dehydrogenase
    1.4e-10   41.3   0.1    2.2e-10   40.7   0.1    1.3  1  KR               KR domain
    0.00026   20.6   0.1     0.0003   20.3   0.1    1.5  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0029   17.1   0.0     0.0046   16.4   0.0    1.3  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
     0.0038   16.4   0.0     0.0068   15.6   0.0    1.4  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
      0.054   12.5   0.2      0.095   11.7   0.0    1.5  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
        0.1   12.3   0.0       0.18   11.5   0.0    1.4  1  Wax2_C           WAX2 C-terminal domain
       0.16   11.0   0.1       0.26   10.3   0.1    1.3  1  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3   0.0   1.2e-46   2.5e-43       1     229 [.      13     256 ..      13     258 .. 0.93

  Alignments for each domain:
  == domain 1  score: 148.3 bits;  conditional E-value: 1.2e-46
                   TTTTSHHHHHHHHHHHTT-EEE.EEESSGGH.HHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG....CSS-GG CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevv.ltdlneea.kkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapk....lkgpfl 88 
                   G asgIG+a+ ++lae+Ga v+ l+d++  +  +  e++a++ +++ v   e+DV++ ++v+++ + +v+++g l+++ n agia+      +  +l
    CCE30232.1  13 GGASGIGAATCRLLAERGAAVIcLADVSSTNfTSLQESIAKSNPSTlVhcTELDVRSADKVDQWLQSIVSTHGDLHGAANVAGIAQGaglrATPTIL 109
                   669****************9763899***998888888888888886578999*********************************99987788999 PP

                   GH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC....CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGG CS
  adh_short_C2  89 etsreefdraldvnlyslfllakaalplmkeg....gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasg 181
                   e +++e+ r+ldvnl+++f+ ++a +++mk+      sivn++s++a   vp+  ayg++K a+  lt ++A+++   giRvN+vspg+++T++  +
    CCE30232.1 110 EENDAEWSRILDVNLNGVFYSTRAQVRVMKDLppghRSIVNVASIAAFSHVPDVYAYGTSKSACAYLTTCIAADVFWSGIRVNCVSPGITNTPMLPQ 206
                   9****************************986676899*********************************************************** PP

                   STTHHHHHHHHHHHSTTSS..-B-HHHHHHHHHHHCSGGGTT--SEEEEE CS
  adh_short_C2 182 ikgfdelleelearaplgr..lgtpeevaeaalfLasdeasyitGqtlvv 229
                   ++ + + l+e+++++  +   +g+++ va+++++L+s+++  + G+++ v
    CCE30232.1 207 FEPKAKSLDEIKDMYRDQGypTGEADGVARTIVWLLSEDSIPVYGANINV 256
                   **9999*****999998876689**********************99987 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.8   0.0   7.3e-44   1.5e-40       1     191 [.       7     208 ..       7     212 .. 0.94

  Alignments for each domain:
  == domain 1  score: 138.8 bits;  conditional E-value: 7.3e-44
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S......S-- CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi......tgs 90 
                 kv  +tG++sGIG a+++ la++Ga v++ +d s+ +   + +++ +   ++ +++ ++Dv+++++v++ ++ +v+ +g l+   n AGi        +
  CCE30232.1   7 KVFAITGGASGIGAATCRLLAERGAAVIClADVSSTNFTSLQESIAKSnpSTLVHCTELDVRSADKVDQWLQSIVSTHGDLHGAANVAGIaqgaglRAT 105
                 6788*************************899999999999999998878888*******************************999999999988888 PP

                 SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTE..EEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short  91 gpfselseeewervievNltgvflltravlpamlkqssG..rIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                  ++ e +++ew r+++vNl+gvf  tra ++ m++   G  +Ivnv+S+a++ +v+ v aY++sK a a lt ++a ++  +girvn+v PG+++T+m 
  CCE30232.1 106 PTILEENDAEWSRILDVNLNGVFYSTRAQVRVMKDLPPGhrSIVNVASIAAFSHVPDVYAYGTSKSACAYLTTCIAADVFWSGIRVNCVSPGITNTPML 204
                 9999******************************77777447********************************************************8 PP

                 HHHC CS
   adh_short 188 kelr 191
                  + +
  CCE30232.1 205 PQFE 208
                 7665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   1.1e-13   2.2e-10       3     116 ..       9     127 ..       8     180 .. 0.76

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.1e-13
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS......S---EEEE-------- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee......ppikGvihaAgvlrdk 95 
                 + itGG+ g+G +++r lae+ga+ + l   s+++  + ++ ia+ ++  + v++ ++Dv ++d+v ++l++i +++      ++++G+ + Ag+ ++ 
  CCE30232.1   9 FAITGGASGIGAATCRLLAERGAAVICLADVSSTNFTSLQESIAK-SNPSTLVHCTELDVRSADKVDQWLQSIVSTHgdlhgaANVAGIAQGAGLRATP 106
                 57**************************99995555555555554.445889********************999883333334555666666666677 PP

                 -TTT--HHHHHHHHTTTTHHH CS
          KR  96 lleemtaedleqvlapKvkGa 116
                 ++ e +++++ ++l   ++G+
  CCE30232.1 107 TILEENDAEWSRILDVNLNGV 127
                 777777777877777766665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   1.5e-07    0.0003       3      79 ..      11      98 ..       9     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.5e-07
                EETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHH.T-SEEEE--S.---HHH CS
   Epimerase  3 VtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkee.qpdavihlAa.vggvaa 79
                +tG++  iG+a+++ l+e+g  vi+l+  ss++ t+++e +         + +eld++ ++++++ +++    +  +h Aa v+g+a+
  CCE30232.1 11 ITGGASGIGAATCRLLAERGAAVICLADVSSTNFTSLQESIaksnpstlvHCTELDVRSADKVDQWLQSIvSTHGDLHGAAnVAGIAQ 98
                9*************************9997777777777779***********************99987666666777777777765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.3e-06    0.0046       2      74 ..      11      80 ..      10      84 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.3e-06
                   EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74
                   iTG+a  iG+ +++lL e+g  v+ + + ss+  t+  e++ak++    ++ ++  + D++ ++++++ l+++
     CCE30232.1 11 ITGGASGIGAATCRLLAERGAAVICLADVSSTNFTSLQESIAKSN---PSTLVHCTELDVRSADKVDQWLQSI 80
                   9***********************998888776666666666543...45679999******99999999876 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.4e-06    0.0068       3      76 ..      11      80 ..       9      93 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.4e-06
                     EETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.. CS
  Polysacc_synt_2  3 vtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel 76
                     +tG++  iG + +r ++++ ++ i l + + ++  ++++++ ++  ++ ++    ++  dvr +++++++l+++
       CCE30232.1 11 ITGGASGIGAATCRLLAERGAAVICLADVSSTNFTSLQESIAKSNPSTLVH----CTELDVRSADKVDQWLQSI 80
                     9***************************************97666664443....4578********9999854 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.7e-05     0.095       1      67 [.      10      80 ..      10     103 .. 0.81
   2 ?   -3.3   0.1       1.7   3.4e+03      76     115 ..     148     187 ..     146     204 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.7e-05
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlDlres..pelleelskvnvkk...viegDvtdkdkleealegv 67
                ++tGga  +G+a ++ L +++ +  +  +D+     ++l+e++ k+n  +   + e Dv+++dk+++ l+++
  CCE30232.1 10 AITGGASGIGAATCRLLAERG-AAVICLADVSSTnfTSLQESIAKSNPSTlvhCTELDVRSADKVDQWLQSI 80
                59***************9999.58999999876522578899999998888778889*********999975 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.7
   3Beta_HSD  76 lvdvagkltedeimkvnvkGTrnvleacvkagvrvlvYtS 115
                 +v+va+   + ++ +v  +GT +   a +++ + + v+ S
  CCE30232.1 148 IVNVASIAAFSHVPDVYAYGTSKSACAYLTTCIAADVFWS 187
                 6677777777788888888887654444455555555555 PP

>> Wax2_C  WAX2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.9e-05      0.18       3      54 ..      11      69 ..       8      92 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.9e-05
      Wax2_C  3 ltgklskvaraialaLcergvkvlvl...skeeyeklkkelpeelqknlvlskk....a 54
                +tg +s ++ a++  L+erg  v+ l   s++++++l++++++++ ++lv+ ++    +
  CCE30232.1 11 ITGGASGIGAATCRLLAERGAAVICLadvSSTNFTSLQESIAKSNPSTLVHCTEldvrS 69
                689999******************9988899********************99854441 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00013      0.26       4      59 ..      10      63 ..       7     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00013
                   EEESTTSHHHHHHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHHHHH--SEEEE-- CS
  RmlD_sub_bind  4 lvtGanGqlGseLakqlaeeglevlaltreeldltdaeavaellkeakpdvvvnaA 59
                    +tG+   +G +  ++lae+g++v+ l  +++  t+ ++++e +++ +p+ +v++ 
     CCE30232.1 10 AITGGASGIGAATCRLLAERGAAVICL--ADVSSTNFTSLQESIAKSNPSTLVHCT 63
                   69********************99999..8888999999****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1946.58
//
Query:       CCE30233.1  [L=473]
Description: probable catalase isozyme P [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.1e-137  458.3   0.0   2.7e-137  458.0   0.0    1.0  1  Catalase      Catalase
     0.0021   18.1   0.1     0.0037   17.4   0.1    1.3  1  Replic_Relax  Replication-relaxation
     0.0034   17.6   0.0     0.0094   16.1   0.0    1.8  1  Catalase-rel  Catalase-related immune-responsive


Domain annotation for each model (and alignments):
>> Catalase  Catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  458.0   0.0  4.5e-141  2.7e-137      26     355 ..      32     368 ..       9     396 .. 0.94

  Alignments for each domain:
  == domain 1  score: 458.0 bits;  conditional E-value: 4.5e-141
                 T-HHHHHHHHHHHT------SS--SEEEEEEEEEESS--TTT---GGGSSTT-EEEEEEEEE-SS--TT--SSSSS--EEEEEEEETTEEEEEEEESSS CS
    Catalase  26 qdvhlieklahfdreripeRvvhAkGagahgeFevtkdisdltkakllskvgkktpvlvRfStvagekgsadtaRdvrGfavkfyTeeGnwDlvgnntp 124
                 qd  l++ l++f+re+ipeR vhA+Gaga+geFevt+d+sd++ +++l  vgkktp++vRfSt + e+gsa+++Rdv+G+a+k +T++GnwD+v+ n+p
  CCE30233.1  32 QDSRLRDILSRFNREKIPERAVHARGAGAYGEFEVTHDVSDICDIDMLLGVGKKTPCVVRFSTTTLERGSAESVRDVKGMAIKHFTQDGNWDWVCLNIP 130
                 89************************************************************************************************* PP

                 S-S-S-GGGHHHHHHHHSB-TTT-SB-HHHHHHHHHT-GGGHHHHHHHHSGGGSBS-GGGS-EE--S-EEEE-TT--EEEEEEEEEETT---B--HHHH CS
    Catalase 125 vFfirDpikfpdlihsqkrepqtnlkdaamfwdflslnpeslhqvlilfsdrgipksyrhmngygvhtfklvnkegevvyvkfhfktkqgvknltaeea 223
                 +FfirDp kfpd++h+q+++p+tn+ +++  w+f+ +n+e+lh+v++ fsd g++ +yr+m+gy  h++k+v  +g+++yv++ + ++qg +  t ++a
  CCE30233.1 131 MFFIRDPSKFPDMVHAQRPDPTTNVANPSRWWEFVCNNHETLHMVMFQFSDFGTMFDYRSMSGYAAHAYKWVMPDGSWKYVHWFLASDQGPNFETGHQA 229
                 *************************************************************************************************** PP

                 HHHHHH-TTHHHHHHHHHHHTT---EEEEEEEEEEHHHHTTTHHHHT-TT----TTTS--.......EEEEEEEEEE--S-HHHHTTT----TT---TT CS
    Catalase 224 eklagedpdyatrdLyeaiekgeypewelyvqvmteeeaeklrfnilDlTkvwpekevpl.......revGkltLnrnpenyFaevEqvafspsnlvpG 315
                 +++ ++d+++atrdLy+++e+geyp+w+++vqv+++e+a kl fnilD+Tk w+  ++p        r++GkltL + p++yF+e+Eq+afsps+lv G
  CCE30233.1 230 KQIGADDAESATRDLYQSLERGEYPSWTVKVQVVDPEDAPKLPFNILDVTKHWNLGNYPPdidvipgRTLGKLTLKKGPQDYFEEIEQLAFSPSRLVHG 328
                 *******************************************************9998777777779******************************* PP

                 EE--S-HHHHHHHHHHHHHHHHHT-TTGGGSGGG---..- CS
    Catalase 316 iepseDklLqgRlfsYadtqryRlGvnyqqlpvNrpkakv 355
                 +e+seD++Lq+Rlf+Y+d+q++RlG+n   lp Nr+k+ +
  CCE30233.1 329 VEASEDPMLQARLFAYPDAQKHRLGPNNLDLPANRTKKLA 368
                 ***********************************97333 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   6.2e-07    0.0037     106     159 ..     142     220 ..     139     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.2e-07
  Replic_Relax 106 alaaaaR..etpdaa...lteWresaktkafgk........................kaktllkPDaflsweedg.fflEvDtg 159
                   ++++a+R     +++   +++W+e+ ++++ +                          a++++ PD+  sw++   +fl  D+g
    CCE30233.1 142 DMVHAQRpdP--TTNvanPSRWWEFVCNNHETLhmvmfqfsdfgtmfdyrsmsgyaaHAYKWVMPDG--SWKY-VhWFLASDQG 220
                   6788999553..444447************7778*********************************..**99.5599988876 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.6e-06    0.0094       4      63 ..     404     466 ..     401     468 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.6e-06
                   G--SSHHHHHHHHHS-....HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-HHHHHHHHH CS
  Catalase-rel   4 fddhfsQagllyrsms....eeekerlvnniafelskvedeeiqerqlehfakvDpdlgqrVae 63 
                    + +++ ++++++ +     e+ ++ lv n+a+++s+v+  ++++++ + +a +  dl+ rV++
    CCE30233.1 404 NETDYKFPREFWKALPrlrgEAFQNSLVVNMAKSVSQVP-ADMRQKVYSTLALIADDLADRVRT 466
                   4679999999**65542333899***************9.**********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3568.51
//
Query:       CCE30234.1  [L=507]
Description: related to trichodiene oxygenase cytochrome P450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-52  176.3   0.0    1.8e-51  175.4   0.0    1.4  1  p450       Cytochrome P450
  ------ inclusion threshold ------
        0.2   11.4   0.0        0.3   10.9   0.0    1.2  1  Birna_VP4  Birnavirus VP4 protein


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.4   0.0     2e-55   1.8e-51      26     437 ..      74     475 ..      57     484 .. 0.79

  Alignments for each domain:
  == domain 1  score: 175.4 bits;  conditional E-value: 2e-55
                 HHHHHHHH.-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHH CS
        p450  26 lrklqkky.gpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl.sleelveeea 122
                 +++l+++y  pi r+ +++ +++ +  ++ + +   k+        +++ +++   +f+g + +     + +  R+ l p   +  +     +l  + +
  CCE30234.1  74 FSRLHEQYnSPIIRIGPNNVHTTQVEFYDVIFKSGSKWL-------KDKSFYK---YFNGLDAMIEP-YQYRTYRTHLAPLYAQRAIDgLAPKLRSDLT 161
                 666666665555555555555555554444444444443.......2233343...44444444433.4455555555555555533333445566666 PP

                 HHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCCSCHHHHHHHHHHHHHHHHH CS
        p450 123 edlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp.llkylptkllrklkeavkklkdll 220
                 +    ++r++++ + +++++++l    +++i   lF+  ++l++ ++   +++a+e+l  ++++  +  + + p +l+ +p+  + ++++   +++++ 
  CCE30234.1 162 NSASGMMRQTKNGQ-TVNMAKVLRTLSTSMILHNLFSLDISLNDGDEYHPFLEAFEQL--MTQSWLFVTYPMVPmVLSLIPGTSFARFNSSYTTFSNYC 257
                 66777788888877.7*************************9999999**********..666666667777777************************ PP

                 HHHHHH.HHHCHCHCSCSSCSH.HHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC.CTTTT-HHH CS
        p450 221 dkliee.rretldsakksrrdf.ldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevl.gdkreptyd 316
                  +   e +r++ +s+++s+rd  ++  l+ k + + ++k         v+++ ++G+dTt+ t++ a+y+++  P+v e l  E+de+    ++e++y+
  CCE30234.1 258 TAWNDEdMRKQRESEEQSTRDShTKRYLSLK-DDDARKKTAIPYPLDDVFNFVAGGSDTTAYTTACAFYHILSSPTVRENLVVELDEHSsIIRDEFDYN 355
                 *999762344444444555555055555554.44444789999999*****************************************9965566***** PP

                 HCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TT CS
        p450 317 dlqklpyldavikEtLRlhpvvplllpRevtk.dvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiG 414
                  +q+lpyl+avikEtLR++ +vp +lpR v++  ++i+ +++p+Gt v++  +a++ ++++fp P++F peR+   k    + +   ++F+ GpR+CiG
  CCE30234.1 356 KIQNLPYLNAVIKETLRISVPVPGSLPRIVPQgGITIGSFSLPAGTGVSITQQAISFNEKIFPLPHSFLPERWIGPKS-V-GLDKWNIAFSRGPRQCIG 452
                 ********************************99****************************************9987.4.89999************* PP

                 HHHHHHHHHHHHHHHHHHEEEEE CS
        p450 415 erlArmelklflatlLqnFevel 437
                   lA++el+ ++a ++++F++ l
  CCE30234.1 453 TTLAYLELRCVIAYFFSRFDMAL 475
                 *******************9876 PP

>> Birna_VP4  Birnavirus VP4 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.3e-05       0.3      13      61 ..     140     189 ..     134     231 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.3e-05
   Birna_VP4  13 aaPli..gaideladallGDkaqsasGryvaraasGkarsaskrlrqllea 61 
                  aPl    aid+la +l  D ++sasG  + ++  G++  ++k lr+l ++
  CCE30234.1 140 LAPLYaqRAIDGLAPKLRSDLTNSASG-MMRQTKNGQTVNMAKVLRTLSTS 189
                 566642269******************.99999*************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3546.97
//
Query:       CCE30235.1  [L=1303]
Description: related to non-ribosomal peptide synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-60  204.5   0.0    2.8e-60  204.1   0.0    1.2  1  AMP-binding   AMP-binding enzyme
    1.7e-32  112.7   0.0    7.4e-26   90.8   0.0    4.5  2  Condensation  Condensation domain
    2.9e-15   56.4   0.1    1.2e-13   51.1   0.1    2.7  2  PP-binding    Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.1   0.0   4.7e-64   2.8e-60       3     423 .]     256     653 ..     254     653 .. 0.84

  Alignments for each domain:
  == domain 1  score: 204.1 bits;  conditional E-value: 4.7e-64
                  HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEE CS
  AMP-binding   3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvlia 100
                  e+++ tp +va+     +  ++Y+el+e ++ + + Lr+lG++++  V il ++s   v+a+l+++kaG++ + l+p+ ++++l+ i++++ a+++++
   CCE30235.1 256 EWCRWTPSAVAVCG--WDGDFSYKELNELSTGVKHDLRHLGIGPEVFVPILFEKSRWAVIAMLGVMKAGGAFILLDPAHPPKRLRSICDKVSARLVVS 351
                  66777999999965..7889*****************************************************************************3 PP

                  TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSC CS
  AMP-binding 101 tvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfk 198
                   v++++   l++        +  +v+  +e++++ ++++  e +++      +  + p++ +y ++TSG+TG+PKGV+ sh +++a++  + l+   +
   CCE30235.1 352 SVQQAD---LAAG------LAGHVVIVGGEVATAGMAQHVGEHDDSM-----DCIAAPHNALYAVFTSGSTGTPKGVVNSHSSFLAAMPVY-LK-ALE 433
                  222222...2222......2234556667888787777777666543.....34789*****************************96664.33.466 PP

                  CTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS.-E CS
  AMP-binding 199 lkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllgge.pl 295
                  l+++++v++++++a+++ + ++ l++l++G++v+++++ ++  +  l  +i++++ t++ ++P+v++ l +   ++      d++sl++++lgge + 
   CCE30235.1 434 LDNNSRVFQFASYAFDVTI-FDALMTLVAGGCVCVPSNADR--SSDLTSAIQHFGTTHLSVTPTVARIL-D---PQ------DFPSLKTIVLGGElSA 518
                  7789**************7.***************998888..34589*****************9998.3...44......99******99887356 PP

                  BHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE.. CS
  AMP-binding 296 spellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafds.. 391
                  s ell++++++   +v+ +YG +E+t++ + ++ +++ ++++++     ++ + +  ++++++ p g +Gellv g+ v +gYl + ++t+e+f++  
   CCE30235.1 519 SDELLKWVNNV---RVIRLYGASECTVMSIQCT-SGPASSIKTINYETGNCCWVVNPQNHEQLRPLGAVGELLVEGAVVGRGYLDDASQTSETFIEap 612
                  66777777776...59************97444.67777999999997666665555555666689*****************************889 PP

                  .........TCCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 392 .........egrwlrTGDlgrldedGyleivgRkkdliklr 423
                           +   +++GDl+r+ +d ++++v Rk  ++klr
   CCE30235.1 613 awlqelrqgSSTVYKSGDLVRIAADKSVQFVCRKSTQVKLR 653
                  9***9*964245***************************96 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   1.6e-05     0.096     198     336 ..       7     129 ..       5     236 .. 0.57
   2 !   90.8   0.0   1.2e-29   7.4e-26       2     444 ..     905    1294 ..     904    1298 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.6e-05
                   HHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC--SS CS
  Condensation 198 WseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdiermvGl 294
                   W+++le + p  ++p+  ++   +s +  ++ ++l e+   +l ++ ++ gv++  vl  a+g++L+ ytgqd + + +++    s           
    CCE30235.1   7 WRKYLEDYIP-CSFPTFLDNEGADSKSFASVLVRL-EHPYGRLMSFSNNCGVDVAVVLNVAWGIVLQAYTGQDATCFAVIAE---SN---------- 88 
                   6666666555.556665444444444445666666.55666788999**************************999987763...33.......... PP

                   -EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHH CS
  Condensation 295 FvntlPlridvkeaktfselikrvkedllkaephqgypleeL 336
                    +n+ P ri+   +k  s+++++ +    +   + ++p   L
    CCE30235.1  89 -LNIRPCRIRFTSDKVVSDILSACQSPCGEKTGDHDIPASHL 129
                   .45556666666666666666666665555555556666655 PP

  == domain 2  score: 90.8 bits;  conditional E-value: 1.2e-29
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    +d+yp +p+Qk+++  ++ +++  a++ ++ + l   +dl+rl+ a+ ++ + +++LRt+++      ++Qv+  e ++++  +e  d+e +e  
    CCE30235.1  905 EDVYPCTPLQKGLL--AETMRDAAAFVAKIEVPLPRDVDLDRLRHAWAAVAKANPILRTRMIFSPSYGMLQVVVRE-DIPW--IESDDVESQE-- 992 
                    799*******9986..56667899*************************************999999999999865.4555..4555444443.. PP

                    HHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHH CS
  Condensation   97 eaieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdl 191 
                      + ++              +L++  l +    +  l+l +HH + DG Sl++++ +l ++Y    +ge+l   + + + +y            +
    CCE30235.1  993 --LVAVG------------RSLVQLILRR--RPSTALFLHIHHAVYDGYSLPLMFAQLNNAY----HGETLAFRPASAFIRYLAT---------M 1058
                    ..22222............3677766666..788899*************************....***********99999988.........6 PP

                    HHHHHHHHHHHH.......S.---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTC CS
  Condensation  192 ekeeaYWseqlegel.pvlq.LpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRese 284 
                     ++ +YW+ + +g + p+   Lp  + rp  +s   +++ ++             ++ + t n+    a++++    +g  d+  gt++sgR+ +
    CCE30235.1 1059 PDATDYWQSMCQGLEsPSFPaLPHSSHRPHPDSKATHTVCVAS-----------PQAREYTPNTHVRLAWAITQAHEQGLLDVFYGTVVSGRNAP 1142
                    6789****99999651344468888888888888866666665...........34444555555556899999999****************** PP

                    STCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEEC CS
  Condensation  285 ikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselkls 379 
                    +++ie+m+   v t+P ri ++ +    ++++r+++ + +  p ++++l e+   + l ++++    f++ + ++ + ++++e++ ++ s+ + +
    CCE30235.1 1143 VDQIESMLIPTVATVPCRISLDVDSPVRKILHRIQDVATRGIPFEQIGLAEI---SHLGKDAAHACSFQTLLLMQPTAVEQNENDFFNTSTSDAN 1234
                    *********************9999999999999999999999999999999...555567778999**************************** PP

                    EE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC CS
  Condensation  380 vssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklse 444 
                          +  + y+++l  + +n++l+++  Y  +  +  t++r+l+ l + ++++ + p + + +
    CCE30235.1 1235 -----YRADATYAINLFCTLENQDLSVTALYDGNIVSTDTMQRLLQNLGKSMQEIHAAPRTLIGD 1294
                    .....45789*********************************************9999877665 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.038   2.3e+02      24      45 ..      23      44 ..      20      51 .. 0.83
   2 !   51.1   0.1   2.1e-17   1.2e-13       4      66 ..     803     864 ..     800     865 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.038
  PP-binding 24 lfdlGlDSllavellaaleeef 45
                l++ G DS +++++l++le+ +
  CCE30235.1 23 LDNEGADSKSFASVLVRLEHPY 44
                4469**************9865 PP

  == domain 2  score: 51.1 bits;  conditional E-value: 2.1e-17
  PP-binding   4 relvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66 
                 ++ +a+vlg++l++i++d+++f+lG+DSl+a++l+a+ +++ ++++++  +f+hp l+ela++
  CCE30235.1 803 QRFFAQVLGLSLDQIGADDHFFSLGGDSLTAMRLAAMARKA-KFDLTVQNVFDHPELSELARH 864
                 5679*************************************.*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.43
# Mc/sec: 9003.46
//
Query:       CCE30236.1  [L=380]
Description: probable NADPH2 dehydrogenase chain OYE2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-88  297.6   0.0    1.5e-88  297.3   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil
  ------ inclusion threshold ------
      0.051   13.0   0.2         11    5.4   0.0    2.6  3  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.3   0.0   1.7e-92   1.5e-88       1     341 [.       5     343 ..       5     344 .. 0.88

  Alignments for each domain:
  == domain 1  score: 297.3 bits;  conditional E-value: 1.7e-92
                   CCCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEE CS
  Oxidored_FMN   1 kLFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvv 97 
                   +LF+ + +g++ L+++iv +pmtr ra d+g v+   ++ +y+qra+  +tl++t+a+++ p  +gf+n pgiw+++qi++w++++++vh +gs+++
    CCE30236.1   5 NLFNTVPFGKNVLNHKIVLSPMTRFRADDNG-VPLSYMKTFYAQRASVRGTLLVTDAVAICPRTKGFPNVPGIWNKDQIAAWKEVVDEVHSKGSFIW 100
                   69999**************************.7778************************************************************* PP

                   EEEE--GGGS..SCSTCEC....SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHHHHHH.TT-SEEEEEE-CTSHHHHHH-TTT---- CS
  Oxidored_FMN  98 vqlwhlGreakseyladqe..vdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAkraie.AgfDgVeihganGYLlnqFlspksnkrt 191
                   +qlw +Gr+a  e l  q+   +s s   +++ +    +e+  +++l+++ei+q+i ++v+ Ak+a++ AgfDgVeihganG+L++qFl+   n+rt
    CCE30236.1 101 LQLWATGRAADLEALTSQGlkLESSS---EVPVA---PGEPT-PRALDEDEIQQYILDYVQGAKNAVHgAGFDGVEIHGANGFLVDQFLQSSCNRRT 190
                   *****************996655555...22222...34566.89**************************************************** PP

                   STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHH.HHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCCTT.HHHHH CS
  Oxidored_FMN 192 DeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaet.aqkivllkelekrlkdgkklalvhaaeprkrgagsvrteqe.kntef 286
                   D++gGs+enR rF le+ + V++avg++rvg++lSp + ++ + ++ +   q+   +  l +  +++ +la   ++e    +  s rt+ + +n+ f
    CCE30236.1 191 DQWGGSIENRSRFGLEITRGVVDAVGHDRVGMKLSPWSTFQGMGTMDDLvPQFEHFITCLREMDIAYLHLANSRWVE---EEDPSIRTHPDfHNQTF 284
                   **********************************************9997666666777777777777888888888...33333444445577777 PP

                   HCC.CHSSEEEE-SS--SHHHHHHHHHT...TS-SEEEESTHHHH-TTHHHHHHCCTCG CS
  Oxidored_FMN 287 vke.vwkkplitvgriadeekaaeivae...geadLvamgRefladpdlveklkkglpl 341
                   v+    k p++ +g+++ ++    + +     ++ Lv +gR+ +++pdl+++l+ g++l
    CCE30236.1 285 VQMwGKKRPILLAGGYDPDSARRLVDQTysdRNNVLVVFGRHYISNPDLPFRLRMGIAL 343
                   77625678***********9765554434438899*******************99876 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.33   2.9e+03     110     137 ..      82     109 ..      79     116 .. 0.77
   2 ?    4.6   0.0    0.0021        19       4      24 ..     160     180 ..     158     192 .. 0.83
   3 ?    5.4   0.0    0.0012        11     144     193 ..     208     265 ..     194     281 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.33
                   HHHHHHHHHHHHHHTSEEEEE--TTTTS CS
  AP_endonuc_2 110 aeslneladyaekegvklalEtlagsgv 137
                   +++++e++d+ + +g ++ l+ +a   +
    CCE30236.1  82 IAAWKEVVDEVHSKGSFIWLQLWATGRA 109
                   5689999999999998888888877665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0021
                   HHHCT-SEEEEECCTCSHHHH CS
  AP_endonuc_2   4 aaeaGfdgvElfgrdlvpvse 24 
                   ++ aGfdgvE++g+++  v++
    CCE30236.1 160 VHGAGFDGVEIHGANGFLVDQ 180
                   6779**********9998874 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0012
                   HHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGG........EEEEEE.EESS CS
  AP_endonuc_2 144 larlldavdspnvgvclDtgHlliaeedvddalraladr........ikhvHikDakg 193
                   ++ ++dav++++vg+ l +  ++   + +dd++ +++          i+++H++ +++
    CCE30236.1 208 TRGVVDAVGHDRVGMKLSPWSTFQGMGTMDDLVPQFEHFitclremdIAYLHLANSRW 265
                   56789********************888888888888888888888******988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2659.93
//
Query:       CCE30237.1  [L=1792]
Description: related to AM-toxin synthetase (AMT) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-62  209.4   0.0    9.4e-62  209.0   0.0    1.2  1  AMP-binding    AMP-binding enzyme
    1.5e-44  152.1   0.0    2.4e-44  151.5   0.0    1.3  1  NAD_binding_4  Male sterility protein
    7.1e-15   54.6   0.0    3.5e-12   45.7   0.0    3.9  3  Condensation   Condensation domain
    4.8e-12   45.8   0.0    1.4e-11   44.3   0.0    1.7  2  Epimerase      NAD dependent epimerase/dehydratase family
    1.1e-07   32.1   0.1    7.5e-07   29.4   0.0    2.5  2  PP-binding     Phosphopantetheine attachment site
  ------ inclusion threshold ------
      0.051   12.6   0.0       0.23   10.4   0.0    1.9  1  3Beta_HSD      3-beta hydroxysteroid dehydrogenase/isomerase 


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.0   0.0   3.2e-65   9.4e-62       1     423 []     239     642 ..     239     642 .. 0.85

  Alignments for each domain:
  == domain 1  score: 209.0 bits;  conditional E-value: 3.2e-65
                  HHHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding   1 leeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98 
                  ++++++ +p+ +a++    + ++TY eld+ ++ lA  L+++G++++  V i++ ++    va+l+i ka ++   l+ + + ++l+ i+++ ++++ 
   CCE30237.1 239 FRQRCDLHPNSPAVIA--WDGSFTYDELDHFSSLLATRLQAAGIGPDVFVTICATRCRWIPVAMLGIIKARGAFCALDLSHPLDRLKDICDALKSTIT 334
                  6789999*******99..888*******************99******************************************************** PP

                  EETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHC CS
  AMP-binding  99 iatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletr 196
                  i  +  ++ ++++++       ++viv+  d++ ++++   ++  +     p ++ + +p + +y ++TSG+ GkPKGV+++hr++v+++ +  +++ 
   CCE30237.1 335 I--TTPTD-SNIARK-----LASTVIVIGGDAPVESDRITPMN--D-R---P-KPINGHPTNALYSVFTSGSSGKPKGVVVEHRSFVSSALAS-IQPL 416
                  *..55555.223222.....34568888888888775544443..2.2...3.34479******************************98884.5544 PP

                  SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS- CS
  AMP-binding 197 fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggep 294
                  + ++++d+vl++  +a+++++ +e+l++l+sGat+ +++++ +  ++ l +++++l++t   ++P+v++   +   ++      +++slr++ lgge 
   CCE30237.1 417 D-IRPHDRVLHFSAYAFDISV-FEVLTPLISGATIAIPSEKRR--KESLTHAVQELGATWALLTPTVARLY-D---PD------EFPSLRTLALGGEL 500
                  4.579***************8.***************886655..78899*****************9987.3...44......899****9999999 PP

                  EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE.CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBE.ETTSEEEEEEEETTS-SEBTT-H..HHHHHH CS
  AMP-binding 295 lspellrffralfgeevlegYGlTEttgvvtv.lpleedkkklgsvGkplpgvevkivDeetgepv.pdgeeGellvrgpgvmkgYlkkp..eataea 388
                   +++ +  ++++   +v+ +Y ++E++++ +  +    + +  +  G+   ++++ ivD+ +   + p g +Gell+ gp v+++Y  +p  +   + 
   CCE30237.1 501 AQASDIALWQSK---NVVVIYNPAECCPIGVSgPA---CPADGKFLGWSHTCQRAWIVDPRDHDKLpPIGAVGELLIEGPVVARCYAHDPnfSSPDSP 592
                  999999888877...49999**********85333...33345668*************9877666269999*****************943444455 PP

                  EEE..............T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 389 fds..............e.grwlrTGDlgrldedGyleivgRkkdliklr 423
                  f++              +  r++rTGDl+r+  d +l+++gRk+ +ik+r
   CCE30237.1 593 FIQstpswmlrlrsntpSgTRLYRTGDLARYGSDASLYYMGRKDSQIKIR 642
                  77578999******9963456**********99***************96 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5   0.0     8e-48   2.4e-44       1     240 [.    1415    1640 ..    1415    1655 .. 0.91

  Alignments for each domain:
  == domain 1  score: 151.5 bits;  conditional E-value: 8e-48
                     EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHH..H--EE CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelae..evdvi 91  
                     +TGa GF+G+ +l+  L++ + + ++++lvR +s ++a+ R ee+ ++ + +s+ +   +++++v +GDl++p+lGL+e+++++la+  ++++i
     CCE30237.1 1415 VTGANGFIGTQILRHCLEDPT-IdRVIALVRGSSANEARSRTEESARRAQWWSDCH---SQKLEVWPGDLAMPHLGLNETHWRRLADrtTINAI 1504
                     7****************9987.88*******************************8...**************************76226899* PP

                     EE--SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHH CS
  NAD_binding_4   92 ihsaAtvnfdepykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaE 184 
                     ih++A+v++ ++y +l ++Nv +t ++l+la +  +l  +++vS+  y +++ e                 +e + a+ +  +  Y+q+K++aE
     CCE30237.1 1505 IHNGASVHWLKRYADLEATNVGATAQLLQLAVANPRL-GFVYVSSgRYTDPNAE----------------SEEPAAANVAATAMPYSQTKFVAE 1581
                     *************************************.*******889999888................5689999***************** PP

                     HHHHHHHHHH---.....EEEEEE-EEE--SSST---TTSHHHHHHHHHHHH-EEES-SB- CS
  NAD_binding_4  185 klvrearrrsglp.....vvivRpsiitgesktGwingsdlgirgllgliakgvlpeilgd 240 
                      l+r+++   +lp     v i+ ++ ++g++ tG++n +d+++r++  +++ g + +  g+
     CCE30237.1 1582 SLIRRTA--ARLPhgqtqVRIISLGLVIGDPLTGVVNADDYLWRLIATCVQAGEFNSSAGS 1640
                     ******9..4577555559**********************************99977666 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.084   2.5e+02     249     275 ..      24      50 ..       3      60 .. 0.83
   2 ?   -3.8   0.0       1.2   3.7e+03     406     450 ..     170     214 ..     147     218 .. 0.80
   3 !   45.7   0.0   1.2e-15   3.5e-12       2     438 ..     895    1285 ..     894    1298 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.084
                   S-HHHHHHHHHHHHHHHHHT-SEEEEE CS
  Condensation 249 vtlndvllaalgllLskytgqddivvg 275
                    +   ++l+ +g++L  y  +dd+ + 
    CCE30237.1  24 FSFAAIFLTTWGIVLRAYLDTDDVFFE 50 
                   56789******************9875 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.2
                   EEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----H CS
  Condensation 406 ikieYntslFdeetierflerlkelleqviehpeqklselkllsd 450
                   + ++Yn ++ ++ +   ++ +++++ +++++ p+  ++e++ ls+
    CCE30237.1 170 CYLSYNVTRVSDDQAAHVAATFETVAKCIADVPHRLVQEVESLSQ 214
                   567899999999999999999**************9999999987 PP

  == domain 3  score: 45.7 bits;  conditional E-value: 1.2e-15
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE...TTEEEEEE-TT-----EEEE-T..TSSSH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfle.eengepvQvileerevelevleisdleesee 95  
                    +d+yp +p+Q    +++   +++   ++++ l l+  +d +r+++++ +  + +  LRt+++   e+g+ +Qv+           +i  ++++e 
    CCE30237.1  895 EDIYPCTPMQ--ASIISLAVKGKIMPFLTFGLALRDHVDTKRVKDTWHAAYRANSLLRTRIIVcAETGQLYQVVVGG--------DIF-WDDDE- 977 
                    799*******..99999999****************************************99878899999999754........445.45555. PP

                    HHHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--.HHHHHHHHHHHHCSH CS
  Condensation   96 eeaieefaqkdlqepfdLekgpLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktp.Ykdyaeweqqylesk 189 
                         +faq  ++ p     gpL+r++l++       l +++H  + D +S++ ll+d++ +Y    +g +lp+ ++ + Y +ya +        
    CCE30237.1  978 ---CGNFAQP-KSGPSASIGGPLVRMKLVE-----GQLSIAIHRALYDNWSIRQLLNDISGAY----NGLTLPSRPSFNcYVSYAAR-------- 1051
                    ...6788885.5666666678*********.....889*************************....99999998888889999999........ PP

                    HHHHHHHHHHHHHH......S---B.SS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT CS
  Condensation  190 dlekeeaYWseqlegelpvlqLpkd.karpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes 283 
                     le ++++ +  l       +L +  +++p +++        ++++++  ++ + +ke+   l + ++ a++++ +  t+++d+v+g+  sgR +
    CCE30237.1 1052 SLEAASSFCNAELGD----SDLDAAkYPEPVSQNSH-----TNFRAWLGIRVFTCQKESIDVLASEFQLAWAMIAYARTNKKDVVFGVLSSGRSN 1137
                    566778888777765....44544413444444444.....67778999999999999999999******************************* PP

                    CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEE CS
  Condensation  284 eikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselkl 378 
                    + kd ++++G    + Plr+++++ ++   ++++++ ++ +   +   +l ++  +l   r+++    +++v+  e  l +      s+ ++l+ 
    CCE30237.1 1138 ASKDTKEIMGPIATVTPLRVTIDGTQDVGGALEELQYRQEEQAMYTHLGLRRI-GQL--GRNAAAACQIQTVLIVEPDLPDLRGVWFSNDATLPN 1229
                    ************************************99999989999999888.333..345556777999999988555533333333222222 PP

                    CEE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHST CS
  Condensation  379 svssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehp 438 
                      s   + + s+y l+++ +   ++  i   +  +     +++++l++++++l q+  + 
    CCE30237.1 1230 H-S---DADASNYRLTIKCVVGPDCTDIFAIFDHQSLPIMEVKEILSQFEHILGQIHGKE 1285
                    2.2...456778999999888888888888888888888888888888888888876555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.96   2.9e+03      82     115 ..    1099    1133 ..    1059    1154 .. 0.80
   2 !   44.3   0.0   4.7e-15   1.4e-11       1     158 [.    1413    1589 ..    1413    1618 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.96
                  HSHHHHHHHHTHHHHHHHHHHHHHTCT.EEEEEEE CS
   Epimerase   82 edpadfieknlqgtlnlleaarkagvk.rllflsS 115 
                  ++  d++ + +q+++ ++ +ar+++ +  +  lsS
  CCE30237.1 1099 KESIDVLASEFQLAWAMIAYARTNKKDvVFGVLSS 1133
                  667789999999*********99877645555565 PP

  == domain 2  score: 44.3 bits;  conditional E-value: 4.7e-15
                  EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHC.......................EEEE--TT-HHHHHHHHHHHT-SEEEE-- CS
   Epimerase    1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledl.......................elveldltdrsalerlfkeeqpdavihlA 72  
                  ++VtGa+GfiG+++++++le   ++ vi+l r ssa++  ++ +                         + +l l +++ ++rl +++ ++a+ih +
  CCE30237.1 1413 VFVTGANGFIGTQILRHCLEDPtIDrVIALVRGSSANEARSRTEEsarraqwwsdchsqklevwpgdlAMPHLGL-NETHWRRLADRTTINAIIHNG 1508
                  68***************999999777*******88877766666699**************66666544444444.4568****************7 PP

                  S---HHHHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHH CS
   Epimerase   73 avggvaassedpadfieknlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaa 158 
                  a  ++     + ad+  +n+  t +ll+ a ++    ++++sS     ++ae   ee +     ++  pY+ +K  +e+l+++ aa
  CCE30237.1 1509 ASVHWLK---RYADLEATNVGATAQLLQLAVANPRLGFVYVSSGRYTDPNAE--SEEPAAANVAATAMPYSQTKFVAESLIRRTAA 1589
                  7555555...5566677**************99777*******888888888..7888866656****************998765 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.6   7.8e+03      19      29 ..      43      53 ..      37      54 .. 0.81
   2 !   29.4   0.0   2.5e-10   7.5e-07       2      65 ..     784     847 ..     783     848 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.6
  PP-binding 19 dpdtdlfdlGl 29
                d d+ +f++Gl
  CCE30237.1 43 DTDDVFFEYGL 53
                56778*****8 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 2.5e-10
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaa 65 
                 +l+++ + vlg++ + ++ ++d+f lG+DSl+a++lla   +e  ++i+ +d+f +p l++la+
  CCE30237.1 784 RLQRMYSLVLGISRDKVGMESDFFRLGGDSLQAMKLLALAPKEGLTDISYEDIFRYPRLKDLAR 847
                 57777888***********************************989****************97 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   7.7e-05      0.23       2     160 ..    1415    1587 ..    1414    1601 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.7e-05
   3Beta_HSD    2 vtGgaGFlGralvkeLvrleelkevrvlD...............lrespelleelskvnvkk..viegDv......tdkdkleealegvdvvihlas 75  
                  vtG+ GF+G ++ ++ ++   +  v +l                 r  +++ ++ ++    k  v  gD+      +++ + ++  +   ++  ++ 
  CCE30237.1 1415 VTGANGFIGTQILRHCLEDPTIDRVIALVrgssanearsrteesARRAQWW-SDCHSQ---KleVWPGDLamphlgLNETHWRRLADRTTINAIIHN 1507
                  99**********999998776555444435666766666655543334444.333333...233778888333333356677777776555544444 PP

   3Beta_HSD   76 lvdvagkltedeimkvnvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlka 160 
                     v+   +   +   nv  T ++l+ +v +    +vY+Ss     pn ++ee   ++           +y+++K +aE l+ ++
  CCE30237.1 1508 GASVHWLKRYADLEATNVGATAQLLQLAVANPRLGFVYVSSGRYTDPNAESEEPAAAN-----VAATAMPYSQTKFVAESLIRRT 1587
                  5555553444448999*************************99999988777766333.....33456789********999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.99u 0.26s 00:00:01.25 Elapsed: 00:00:00.46
# Mc/sec: 11602.55
//
Query:       CCE30238.1  [L=453]
Description: uncharacterized protein CPUR_04086 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3166.15
//
Query:       CCE30239.1  [L=782]
Description: probable 3-isopropylmalate dehydratase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.7e-159  531.7   0.0   2.5e-159  531.2   0.0    1.2  1  Aconitase    Aconitase family (aconitate hydratase)
    5.3e-39  133.5   0.0      1e-38  132.7   0.0    1.5  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  531.2   0.0  2.8e-163  2.5e-159       1     461 []      13     472 ..      13     472 .. 0.97

  Alignments for each domain:
  == domain 1  score: 531.2 bits;  conditional E-value: 2.8e-163
   Aconitase   1 ekiwdahlvee..eg..iayvpdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefLksaak 95 
                 +k++++h+v+e  +g  ++y+ dr+l+++vt++qa+++l++a++++rr+++tlat+dh+vp++     s +  + +++ +e+  +r  +++ +L+++ k
  CCE30239.1  13 DKVLSNHIVDEklDGtiLLYI-DRHLVHEVTSPQAFEGLRNAGRKLRRPDCTLATTDHNVPTS-----SRKGMKDIASFIEEDDSR--TQCVTLEENVK 103
                 699999*99776766756777.*****************************************.....666677888999988888..*********** PP

   Aconitase  96 afgirvvppg...qGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavigk 191
                 +fg++++ +g   qGIvH++++E+g++lpg+tvv++DSHT+++g++G la+G+G++e+e+v+++q+l +k+ k+++++++G+l +gv++kD++l+ igk
  CCE30239.1 104 EFGLTYFGLGdrrQGIVHVIGPEQGFTLPGTTVVCGDSHTSTHGAFGSLAFGIGTSEVEHVMATQCLITKRSKNMRIQVDGELAPGVSSKDIILHAIGK 202
                 *************************************************************************************************** PP

   Aconitase 192 lrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaav.lveaydkaqalf.elaadedaeydkvleldlstle 288
                 ++++g++g+v+Ef+G+ ++ Ls+e+r++i+NM++E GA++g++++de t+eYLk  gr+ a++   ++++ka+a++ +l++d++a+yd  + +d +++ 
  CCE30239.1 203 IGTAGGTGAVIEFCGSVIRGLSMEARMSICNMSIEGGARAGMVAPDEITFEYLK--GRPLAPKyGSDEWAKATAYWkALQSDPGAKYDIDIFIDGKDII 299
                 ******************************************************..******98889*********88********************* PP

   Aconitase 289 psvagpkrPqdavplselvk.k.efkeelekeaaekaley.klkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgv.ktsvaPG 383
                 p+++++++P+d+vp+++ v+ + +f++e++k + ++ ley +l++gt+++d+ vd+++igSCTNs++ed+raaa++++     g+k+++++ +++v+PG
  CCE30239.1 300 PTITWGTSPEDVVPITGVVPdPeTFATEAKKVSGRRMLEYmGLTPGTPMEDIVVDKVFIGSCTNSRIEDLRAAAHVVK-----GKKIADNIkRAMVVPG 393
                 *******************98558******************************************************.....********99****** PP

   Aconitase 384 SevvkayleaeGlleiLekaGfevvgagCstCig.nsdrleegeaivsssNRNFegRqgpntrayLaSPelvvaaAlaG 461
                 S+ vk ++eaeGl++i+ +aGfe+++agCs+C+g n+d l+++e+++s+sNRNFegRqg+++r++L+SP +++aaA+ G
  CCE30239.1 394 SGLVKTQAEAEGLDQIFVDAGFEWREAGCSMCLGmNPDILAPQERCASTSNRNFEGRQGAGSRTHLMSPVMAAAAAIVG 472
                 *****************************************************************************98 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   0.0   1.1e-42     1e-38       2     130 ..     545     667 ..     544     668 .. 0.96

  Alignments for each domain:
  == domain 1  score: 132.7 bits;  conditional E-value: 1.1e-42
                  CCCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHHH CS
  Aconitase_C   2 ekllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalrl 99 
                  +k++ lkG++++++ +nvdtd++ipkqf++ti+++glg++l++  r+n +      e++++v+ +e+y+  +ak++v +g nfG+GSSRehA++al++
   CCE30239.1 545 PKFESLKGIAAPLDMANVDTDAIIPKQFLKTIKRTGLGSALFHALRYNPDGS----ENPNFVLSKEPYR--NAKILVCTGVNFGCGSSREHAPWALLD 636
                  6899***************************************998887655....7999*********..*************************** PP

                  TTEEEEEES-B-HHHHHHHHHTT-EEEEEST CS
  Aconitase_C 100 lGikaviaeSFerIfennliknglLplefke 130
                  +Gik +ia+SF++If nn +kng+Lp+++ +
   CCE30239.1 637 FGIKCIIAPSFADIFFNNTFKNGMLPIRITN 667
                  ***************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5605.09
//
Query:       CCE30240.1  [L=339]
Description: uncharacterized protein CPUR_04088 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2719.51
//
Query:       CCE30241.1  [L=501]
Description: uncharacterized protein CPUR_04089 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-36  124.6   0.2      4e-36  123.4   0.2    1.6  1  DUF2418   Protein of unknown function (DUF2418)


Domain annotation for each model (and alignments):
>> DUF2418  Protein of unknown function (DUF2418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.2   2.2e-40     4e-36       1      96 []     161     265 ..     161     265 .. 0.99

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 2.2e-40
     DUF2418   1 devweLsvWdpskfslrlftlFsPlhvlllvlll.........sesvlktlllvvllslqlylliskfeqqikDkkiiqkevleEYnekfVkPrlnvlv 90 
                 ++vweLs+Wdp ++++rl++lFsP+hvl+++++l         s++v++tl+++++ls+q++ll s+++qq+kD++iiq+ev++EY+++fV+Pr+n++v
  CCE30241.1 161 RDVWELSMWDPLPVCIRLLCLFSPGHVLVYLIFLplapldprpSVTVFNTLIMQIVLSVQMMLLSSRYSQQAKDSAIIQREVFHEYDTNFVQPRINPVV 259
                 68************************************************************************************************* PP

     DUF2418  91 rdvavq 96 
                 rdv++q
  CCE30241.1 260 RDVGTQ 265
                 ****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3993.35
//
Query:       CCE30242.1  [L=123]
Description: probable vacuolar ATP synthase subunit F [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-33  113.9   0.1    3.8e-33  113.7   0.1    1.0  1  ATP-synt_F  ATP synthase (F/14-kDa) subunit


Domain annotation for each model (and alignments):
>> ATP-synt_F  ATP synthase (F/14-kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   0.1   2.1e-37   3.8e-33       2      91 .]      14     117 ..      13     117 .. 0.99

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 2.1e-37
                 EEEESHHHHHHHHHTTCEEEE..............CSSHHHHHHHHHHHHH.HTTEEEEEEEHHHHCCCHHHHHHCTCSSSSEEEEESCSCCGGSHHCH CS
  ATP-synt_F   2 avIGdedtvtgfrlaGvgeve..............vtdeeeieealkelle.redigiilitekiaeeirelideykeealPaileIPskegpydeekd 85 
                 avIGded+vtg++laG+g+v+              +td+++ie+a++++++ r+digi+li+++ia++ir+ id+y+  a+P++leIPsk++pyd+ekd
  CCE30242.1  14 AVIGDEDSVTGLLLAGIGHVTtgadaqknflvvdsKTDNAAIESAFNQFTQeRKDIGIVLINQHIADRIRHCIDTYTA-AFPTVLEIPSKDHPYDPEKD 111
                 9*************************************************99**************************.******************** PP

                 HHHHHH CS
  ATP-synt_F  86 svrkkv 91 
                 sv+++v
  CCE30242.1 112 SVLRRV 117
                 ***997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 950.46
//
Query:       CCE30243.1  [L=175]
Description: probable phosphatidylglycerol/phosphatidylinositol transfer protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-15   56.4   0.0    5.9e-15   55.9   0.0    1.3  1  E1_DerP2_DerF2  ML domain
  ------ inclusion threshold ------
      0.022   15.1   0.0      0.029   14.7   0.0    1.2  1  TRP_N           ML-like domain
        0.1   13.1   0.0       0.13   12.7   0.0    1.3  1  Arrestin_C      Arrestin (or S-antigen), C-terminal domain
       0.18   12.1   0.0       0.35   11.2   0.0    1.4  1  NPCBM_assoc     NPCBM-associated, NEW3 domain of alpha-galact


Domain annotation for each model (and alignments):
>> E1_DerP2_DerF2  ML domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   1.3e-18   5.9e-15       3     119 ..      42     153 ..      40     175 .] 0.87

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1.3e-18
                     EEEES.STTTSSEEEEEEEEEESSECEECTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEE-BSSEETCHHHHHHTTTT-SSSB-TCEEEEE CS
  E1_DerP2_DerF2   3 sfedC.gankddavtvksveisppcplkrgqnltisadgstsdeissglkaevevkvggwikvpfelpetddaCkvlelgegleCPikageyvty 96 
                     s+e C +++++  + ++++++ p+ p+++gq l +++ g ++++i++ +  +++v +g +i+++ +      +C++++    l+CP++ g ++ +
      CCE30243.1  42 SIELCpDKKSAGFFDIERIDLAPN-PPVAGQALVVNFRGIVTRTIEKHAFYDLHVNYG-LIRLLGM---RGSFCSQIT-AVDLKCPLRFGRKFGI 130
                     6889*989999***********99.********************************9.7******...559***995.5679************ PP

                     EEEEES-CCCHSCEEEEEEEEEE CS
  E1_DerP2_DerF2  97 tlslplpselpngkyrvelelld 119
                     t++++lp+++p+g+y+v++++ +
      CCE30243.1 131 TKTITLPKKIPPGNYTVTADVFN 153
                     ******************99866 PP

>> TRP_N  ML-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.5e-06     0.029      30     133 ..      72     173 ..      40     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.5e-06
       TRP_N  30 tvvfnvtgt..ssienkavtlelkveaygyevvnetvdpCdan..vkglCPlgpgfkinasgvlkvseevvseipsiaYsipdldatvrvriystgeat 124
                  +v+n+ g+   +ie++    +l v+   ++ + ++  +C++   v+  CPl+ g k+ ++++++ ++    +ip   Y+++      r+  y  +  +
  CCE30243.1  72 ALVVNFRGIvtRTIEKH-AFYDLHVNYGLIRLLGMRGSFCSQItaVDLKCPLRFGRKFGITKTITLPK----KIPPGNYTVTADVFNYRIIHY-VKIVE 164
                 55666666532445555.67788888777888899******9999****************9887775....9********988888888455.45678 PP

       TRP_N 125 eiaCvsati 133
                 +i Cv+ ti
  CCE30243.1 165 RITCVTTTI 173
                 999999887 PP

>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.9e-05      0.13      73     116 ..     122     168 ..      73     175 .] 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
                 -TTEE.EEEEEEE.----B--...---S---EEEEEEEEEEEEEEES CS
  Arrestin_C  73 saakdkletevelqiPeeltp...ssarnvelikvsYklkvkltlsg 116
                   +++k+ ++ ++++P++++p   + + +v+++++ +++k++ ++++
  CCE30243.1 122 LRFGRKFGITKTITLPKKIPPgnyTVTADVFNYRIIHYVKIVERITC 168
                 37788899999*************8889*************988775 PP

>> NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.8e-05      0.35      46      76 ..     121     151 ..     111     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.8e-05
  NPCBM_assoc  46 slapGetveatvkVtppagaaaGdyevtaka 76 
                   l+ G+++  t ++t p+++ +G y+vta +
   CCE30243.1 121 PLRFGRKFGITKTITLPKKIPPGNYTVTADV 151
                  677788999999****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1326.99
//
Query:       CCE30244.1  [L=181]
Description: probable phosphatidylglycerol/phosphatidylinositol transfer protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-26   91.9   0.1    5.5e-26   91.6   0.1    1.1  1  E1_DerP2_DerF2  ML domain
  ------ inclusion threshold ------
      0.094   12.5   0.0        0.1   12.4   0.0    1.2  1  Alph_Pro_TM     Putative transmembrane protein (Alph_Pro_TM)


Domain annotation for each model (and alignments):
>> E1_DerP2_DerF2  ML domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.1   6.2e-30   5.5e-26       2     134 .]      41     167 ..      40     167 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 6.2e-30
                     -EEEES.STTTSSEEEEEEEEEESSECEECTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEE-BSSEETCHHHHHHTTTT-SSSB-TCEEEE CS
  E1_DerP2_DerF2   2 vsfedC.gankddavtvksveisppcplkrgqnltisadgstsdeissglkaevevkvggwikvpfelpetddaCkvlelgegleCPikageyvt 95 
                      ++e+C +++ + ++++++v++ p+ p+++g++l+i+a+g ++++i++g++++++vk+g +i+++     + d+C+++  +  leCP+k+g    
      CCE30244.1  41 SPLEYCpDKKAEGYIKIERVDLAPN-PPAAGKDLAIKATGYVTKTIEKGAYIDLTVKYG-LIRLLAT---KADLCEQI-GEVDLECPLKSGVM-F 128
                     5789**989999***********99.********************************9.7*****9...88****99.68899*********.6 PP

                     EEEEEES-CCCHSCEEEEEEEEEECTTEEEEEEEEEEEE CS
  E1_DerP2_DerF2  96 ytlslplpselpngkyrvelelldedgkeltCvkidvsi 134
                     +t++++lp+e+p+g+y+v++++ +++ k++tC++++v++
      CCE30244.1 129 ITKTVTLPNEIPPGTYTVTADVFSASHKRITCLTATVKF 167
                     7**********************************9985 PP

>> Alph_Pro_TM  Putative transmembrane protein (Alph_Pro_TM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.1e-05       0.1     145     173 ..     124     153 ..      70     175 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.1e-05
  Alph_Pro_TM 145 dgtl.fraevalPanvpeGkytvevyllrd 173
                  +g + + ++v+lP ++p+G+ytv++ +++ 
   CCE30244.1 124 SGVMfITKTVTLPNEIPPGTYTVTADVFSA 153
                  555524568**************9988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1392.48
//
Query:       CCE30245.1  [L=896]
Description: uncharacterized protein CPUR_04093 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-06   26.8   2.1    3.3e-05   24.3   0.0    2.9  2  SET       SET domain
    6.5e-06   25.9  12.6    6.5e-06   25.9  12.6    1.8  2  PHD       PHD-finger


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.7e-09   3.3e-05     108     166 ..     361     414 ..     260     415 .. 0.78
   2 ?   -2.2   3.5      0.54   4.8e+03      71      96 ..     494     541 ..     474     810 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.7e-09
                 HEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEE...TTSSEEEEEESSXBXTTEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx RF
         SET 108 gysidaralksgngagplarflNHsCdpNcnltvqnv...lrgprvavfAtrdIkkGeElti 166
                  ++id  ++k+g+ a    r++  sC+pN+  +++ +    +++++ +++ r I+++e++t+
  CCE30245.1 361 PLYID--TRKEGSSA----RYVRRSCKPNA--QLDTYlseGSEYHFWLVSDRYIPANEQITL 414
                 44588..44999999....***********..55555569********************95 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.54
                 HHHHHHHHHHHTHHHHHHHXTTTS........X..............X CS
                 xxxxxxxxxxxxxxxxxxxxxxxx........x..............x RF
         SET  71 qkqaekedtdaalkasskaesdln........a..............s 96 
                  ++ +k+  +a+++ass ++s+++        +              +
  CCE30245.1 494 SRNSKKKSKKARNHASSPTNSRAAsegqfddsMdvehgsrskhssrdR 541
                 556677777777777777777776443333331333333333333331 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9  12.6   7.2e-10   6.5e-06       2      51 ..      50      98 ..      49      99 .. 0.89
   2 ?   -3.7   0.0       1.3   1.2e+04      42      50 ..     681     689 ..     675     695 .. 0.62

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 7.2e-10
                BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSS.TBSSTTTHT CS
         PHD  2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpeg.ewlCekCke 51
                C +C+   d+++++++C++C++w+H +C  p+ ++e   ++    C  C++
  CCE30245.1 50 C-ICNF-CDDDGNTIFCETCETWQHIDCFYPNNQDEALTKDfAHSCADCEP 98
                6.7777.777**********************99998888899******86 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.3
                 STBSSTTTH CS
         PHD  42 gewlCekCk 50 
                 g+w+ + C+
  CCE30245.1 681 GQWFSQFCH 689
                 466666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (896 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6330.44
//
Query:       CCE30246.1  [L=490]
Description: probable UDP-N-acetylglucosamine:dolichyl phosphate N-acetylglucosamine-1-phosphate transferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-30  105.2   8.1    8.4e-30  103.8   8.1    1.7  1  Glycos_transf_4  Glycosyl transferase family 4
  ------ inclusion threshold ------
       0.34   11.0   2.7        0.6   10.3   0.3    2.7  3  DUF2107          Predicted membrane protein (DUF2107)


Domain annotation for each model (and alignments):
>> Glycos_transf_4  Glycosyl transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   8.1   9.4e-34   8.4e-30       2     159 ..     169     343 ..     168     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 9.4e-34
  Glycos_transf_4   2 llllltillilllGflDDvlglkarlKlilqilaalililtld..lslttlglllt.....qvlielglilavlltllvivgvtNavNliDGld 88 
                      l++++++  i+llG+ DD++++++r+K  +  la++++++++   + +t++ ++++      +l++lg++++++++ +++++   ++N+++G++
       CCE30246.1 169 LGAIISLQTIALLGIGDDLFDIRWRHKWWIPGLASIPILVVYFvdFDVTSIVIPVQlqpylGELFDLGPLYYIYMACVAMFCP-QSINMLAGIN 261
                      567888899****************************99999855555555555557676679********************.********** PP

  Glycos_transf_4  89 Glaagvsiiialalvvla.......avdgrsellllalallgallG....fllfNrypAkvFmGDsgslflGlvlavlailg 159
                      G+++++++++al++++         + +  ++++l++l ll + +G    +ll+N+ypA+vF+GD++ +f G+v+av+ ilg
       CCE30246.1 262 GIEVSQCVVVALLIAFNDclylltpYPHPATDSHLFSLYLLLPWIGvscaLLLHNWYPARVFVGDTYCYFSGMVFAVVGILG 343
                      **********9999887788888884445555555555555544444444****************************9987 PP

>> DUF2107  Predicted membrane protein (DUF2107)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.4   3.6e+03      23      42 ..      43      62 ..      21      65 .. 0.74
   2 ?   10.3   0.3   6.7e-05       0.6       8      53 ..     240     285 ..     233     288 .. 0.88
   3 ?   -3.4   0.0       1.2   1.1e+04      42      54 ..     467     479 ..     444     479 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.4
     DUF2107 23 dplvrllnlEvpavGvllil 42
                 pl+  l l v+a+ ++  +
  CCE30246.1 43 APLIASLALSVAAFSLCYAM 62
                58888899999999888766 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 6.7e-05
     DUF2107   8 liiGtlaaaiGPrekdplvrllnlEvpavGvllilLaynetlALlT 53 
                  i  + +a++ P++ + l  +  +Ev+++ v+ +l+a+n+ l LlT
  CCE30246.1 240 YIYMACVAMFCPQSINMLAGINGIEVSQCVVVALLIAFNDCLYLLT 285
                 56667789999**********************************9 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.2
     DUF2107  42 lLaynetlALlTf 54 
                  L   + lALl f
  CCE30246.1 467 GLFVRHKLALLVF 479
                 4455678888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3954.61
//
Query:       CCE30247.1  [L=713]
Description: uncharacterized protein CPUR_04095 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-12   47.8   0.1    4.1e-12   46.5   0.1    1.7  1  Transglut_core  Transglutaminase-like superfamily
  ------ inclusion threshold ------
      0.098   13.7   0.1       0.36   11.9   0.1    2.0  1  Gln_amidase     Papain fold toxin 1, glutamine deamidase


Domain annotation for each model (and alignments):
>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.1   4.6e-16   4.1e-12      14     112 .]     403     511 ..     391     511 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 4.6e-16
  Transglut_core  14 pl.ekakaiyewvrknveys.aprrtpgsrd..aeavletgkGncedfaslfvallRalGipaRvvtgyls..geeekeq........svaseda 94 
                     ++ +ka+ai +w ++n++y+  +  ++g r+  +e+++++g ++c+++a ++ a+++ +G+++ vv g  +  g+    +        + a+ d 
      CCE30247.1 403 SYsDKARAIFTWCHHNIAYDtVSFFNNGVRHhsVEDTITSGLAVCQGYAEVYMAVAKRAGLECIVVAGHGKgfGH----TalrkgerpPPAKPDG 493
                     3459****************8555555555456**********************************99884433....2345588898899999 PP

  Transglut_core  95 HawvevylegygWvplDp 112
                     Haw+ v ++g+ W  +D+
      CCE30247.1 494 HAWNAVRVDGGVWKLVDA 511
                     ********9999*98885 PP

>> Gln_amidase  Papain fold toxin 1, glutamine deamidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     4e-05      0.36      88     108 ..     477     511 ..     427     515 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4e-05
  Gln_amidase  88 v..............sgHafnavrndnGavvwlDp 108
                                 +gHa+navr d G  +++D+
   CCE30247.1 477 HtalrkgerpppakpDGHAWNAVRVDGGVWKLVDA 511
                  135555555667778*************8888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 5157.30
//
Query:       CCE30248.1  [L=663]
Description: uncharacterized protein CPUR_04096 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-28   99.6   0.3    2.8e-28   98.7   0.0    1.6  2  DUF659         Protein of unknown function (DUF 659)
  ------ inclusion threshold ------
      0.016   14.8   0.3      0.043   13.4   0.3    1.7  1  zf-C2H2_12     Zinc-finger C2H2-type
      0.094   12.5   0.2          1    9.2   0.0    2.8  3  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region


Domain annotation for each model (and alignments):
>> DUF659  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       1.6   9.8e+03     123     142 ..      51      70 ..      46      71 .. 0.77
   2 !   98.7   0.0   4.6e-32   2.8e-28       1     152 []     178     330 ..     178     330 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.6
      DUF659 123 pcaahclnlmledilklkwv 142
                 +  ++ l+++l+ ++k+++v
  CCE30248.1  51 VMKTKDLERILKHLCKCPKV 70 
                 56677899999999998876 PP

  == domain 2  score: 98.7 bits;  conditional E-value: 4.6e-32
      DUF659   1 PsseeLrgtlLqeeveeikkkvkeikkswektgcsillDgwtdkkgrslinflvscpkG.tvFlksvdassekktaeylaelldkvieevgaenVvqvi 98 
                 Ps+++L+++lL++++++i  +++e  ++ +++++++++Dgwt+++g+++ n+++ +p G +vF+ ++  ++e+   + la+ l +vi++ g++++  ++
  CCE30248.1 178 PSRQALATELLDSSYDKILAQTTEELEKNTNDHLTLVTDGWTTSRGEKITNYMLVTPFGqSVFHATCPRDTERIPCADLAKDLLNVIDAAGSTKIKAIC 276
                 9**********************************************************9***********8888888********************* PP

      DUF659  99 tdnasnykkagklleekyptifwtpcaahclnlmledilklkwvkevlekakki 152
                 td+a+n++ka+  + +++p+i+ + + ++ lnl+ +d l+++++k vl++++++
  CCE30248.1 277 TDAAKNMNKAVGIVLRSHPNIHAFRWNSQDLNLLAKDALEIPALKVVLTQVSEV 330
                 *************************************************99876 PP

>> zf-C2H2_12  Zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   7.3e-06     0.043      15      45 ..      35      65 ..      25      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.3e-06
  zf-C2H2_12 15 dydpqrrglvCmvCgeslaslklstikrHIr 45
                +yd  ++gl+C  C++++ +  l++i +H  
  CCE30248.1 35 NYDQVQDGLMCKFCETVMKTKDLERILKHLC 65
                7****************************86 PP

>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.75   4.5e+03      47      68 ..     122     144 ..     121     152 .. 0.75
   2 ?   -1.4   0.0      0.35   2.1e+03      19      39 ..     327     347 ..     307     351 .. 0.61
   3 ?    9.2   0.0   0.00017         1      19      84 ..     548     611 ..     532     613 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.75
                    -S-TTTTHHHHHHT.HHHHH-TT CS
  Dimer_Tnp_hAT  47 pvssaasErsFstl.gkvllesr 68 
                    p+s+  s ++ st+  ++l +++
     CCE30248.1 122 PISTSVSKWVESTAhERELIDQQ 144
                    89999999999999755555554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.35
                    .--HHHHHHHTTTTSHHHHHH CS
  Dimer_Tnp_hAT  19 efdvlewwkensskyPnlskl 39 
                      +v +w++++++ y  l  +
     CCE30248.1 327 VSEVSNWFRNDKEVYSHLKAM 347
                    356777777777777666655 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00017
                    .--HHHHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHHHHHH CS
  Dimer_Tnp_hAT  19 efdvlewwkensskyPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallcieq 84 
                    ++++  ww+ + ++   ls la  +L+i  ss   +r +st g + + sr+ l+ +  ++l++i  
     CCE30248.1 548 RISPYIWWRYHFDN--ELSTLALELLAIRPSSGMIDRLWSTHGFMNNSSRTGLQTEGAKKLVYIAT 611
                    57788899866554..7*******************************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1092  (0.0609069); expected 358.6 (0.02)
Passed bias filter:                      771  (0.043003); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 4020.97
//
Query:       CCE30249.1  [L=323]
Description: uncharacterized protein CPUR_04097 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.003   17.3   0.1     0.0051   16.6   0.1    1.3  1  DEAD        DEAD/DEAH box helicase
  ------ inclusion threshold ------
        0.6    9.5  47.0       0.97    8.8  47.0    1.3  1  SDA1        SDA1
        1.9    7.2   9.6        2.3    6.9   9.6    1.1  1  Presenilin  Presenilin


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   8.6e-07    0.0051       4      62 ..     258     310 ..     255     317 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 8.6e-07
                 HHHHHHHHHTTC.EEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHH CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   4 Qaeaiplilggg.dvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeq 62 
                 Q+++i +++ g+  ++    TG GK+l f++p++        +++  +++++P+ +L ++
  CCE30249.1 258 QSSVIRAVIAGDtPIVQITSTGGGKSLSFMLPAY-------CSPHGTTIVIVPLVALQQD 310
                 88999999977724555579**************.......5677899******999887 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  47.0   0.00016      0.97      81     181 ..      16     113 ..       6     163 .. 0.36

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00016
        SDA1  81 eeekkekreeeeedsddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekkk 179
                 +++++     +++d+dd+dd++d++ ++d+d+++d+     d ++d+++++++d   d ++++++++++++++++++++ +++++++++++++++++++
  CCE30249.1  16 NDDND-----DNDDNDDNDDNDDNDDNDDNDDNDDN-----DDNDDNDDNDDND---DNDDNDDNDDNDDNDDNDDNDD-NDDNDDNDDNDDNDDNDEE 100
                 11111.....11111111111111111111111111.....1111111111111...1111111111111111111111.1111222222222222222 PP

        SDA1 180 k...........k 181
                 +           +
  CCE30249.1 101 FsinasrfaipaD 113
                 2334444454442 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   9.6   0.00038       2.3     230     308 ..      17      94 ..       2     170 .. 0.48

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00038
  Presenilin 230 aevaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessesseeeeee 308
                 +++  ++++++++++++++++++++++++++ +++++ +++++++++++ ++++++++ ++++++++ ++++++++ ++
  CCE30249.1  17 DDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDNDDND-DN 94 
                 2222222222222222222222222222222222222222222222222222222222222222211111111111.11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                        72  (0.00401584); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.09u 0.37s 00:00:01.46 Elapsed: 00:00:00.54
# Mc/sec: 1794.16
//
Query:       CCE30250.1  [L=20]
Description: uncharacterized protein CPUR_04098 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (20 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        71  (0.00396006); expected 358.6 (0.02)
Passed bias filter:                       53  (0.0029561); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.25s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 157.35
//
Query:       CCE30251.1  [L=101]
Description: uncharacterized protein CPUR_04099 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 811.63
//
Query:       CCE30252.1  [L=117]
Description: uncharacterized protein CPUR_04100 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 940.89
//
Query:       CCE30253.1  [L=344]
Description: uncharacterized protein CPUR_04101 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-80  270.4   0.0    2.2e-80  270.1   0.0    1.1  1  Methyltransf_33  Histidine-specific methyltransferase, SAM-de
  ------ inclusion threshold ------
       0.13   11.6   0.0       0.22   10.9   0.0    1.2  1  RE_CfrBI         CfrBI restriction endonuclease


Domain annotation for each model (and alignments):
>> Methyltransf_33  Histidine-specific methyltransferase, SAM-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.1   0.0   2.5e-84   2.2e-80       2     307 ..      19     341 ..      18     343 .. 0.93

  Alignments for each domain:
  == domain 1  score: 270.1 bits;  conditional E-value: 2.5e-84
  Methyltransf_33   2 aedvlagLsskpktlpskllYDarGselFeeitelpeYyptrtEiaiLqehaaeiaaai.paatlvelGsGsseKtrlLLealeaaekeltYvp 94 
                      a++v++gL+skpktlp+ l+Y+++G+e+++ + ++p++yp r+Ei+iL+++ +eia++i p++++++lGs+++eK+++LLealea+ek++ Y++
       CCE30253.1  19 ADQVVKGLKSKPKTLPCLLFYSNEGLEHWNYHARQPDFYPRRQEIEILKQRGSEIARSIaPNSVILDLGSANLEKITYLLEALEAQEKDVLYFA 112
                      789*******************************************************97888******************************* PP

  Methyltransf_33  95 lDvseeaLeealeal.aaeypsleveglvgdyedglewlaslpeaederrlvlflGssigNlepeeaaafLrklraa.l....gpgdllLlGvD 182
                      lDvs+ +L+++l+++ ++++++++++gl g++edgl+w++++pe +d +++vl+lG +igN+++++aaafL++++++ l    ++++ +Ll++D
       CCE30253.1 113 LDVSAPQLAATLKEIpSSNFRHVRFAGLYGTFEDGLRWINETPEIRDLPHCVLLLGLTIGNFSRQNAAAFLQNIANHaLtgasKNKSSILLSLD 206
                      ***************6669**********************************************************769988779******** PP

  Methyltransf_33 183 lvkdeekleaAYndsagvtaaFnlnllerinrel........gad......fdledfehvaewnaeegriemylrsk.rdqtvrvealdltvaf 261
                      ++k ++k+++AY+++  v   F+l++l+ +++ l        + +      ++++d+++ +ewn + gr+e++l  +  d+ +   ++ ++v +
       CCE30253.1 207 SCKVPTKVTRAYTSDGVVP--FALQALTYARTLLcdrfddgiD-KkalscnLRPDDWHYLSEWNFALGRHEASLIPRfGDVCLG--SMLQDVVV 295
                      *************887766..*************655554441.04455559999**********************8888884..44578*** PP

  Methyltransf_33 262 kagekirteiSyKyteeevrelleaaglevlkvWtdeksdfalyll 307
                      k++ek+r+++SyKy+++e ++l+ ++g++   vWt+e +d+a+y l
       CCE30253.1 296 KKDEKVRFACSYKYDAKERQKLFLDSGVDQGMVWTNEGCDVAIYEL 341
                      ******************************************9977 PP

>> RE_CfrBI  CfrBI restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.4e-05      0.22      89     123 ..      79     113 ..      69     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.4e-05
    RE_CfrBI  89 akdvvldlakknikeLssLleelkedatDelqisi 123
                  + v+ldl+  n+++++ Lle l+ + +D l   +
  CCE30253.1  79 PNSVILDLGSANLEKITYLLEALEAQEKDVLYFAL 113
                 5689*************************986665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2803.91
//
Query:       CCE30254.1  [L=231]
Description: uncharacterized protein CPUR_04102 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-26   91.0   0.1    9.4e-26   90.5   0.1    1.2  1  DUF659    Protein of unknown function (DUF 659)


Domain annotation for each model (and alignments):
>> DUF659  Protein of unknown function (DUF 659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.1   5.2e-30   9.4e-26      33     149 ..      17     134 ..       7     137 .. 0.95

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 5.2e-30
      DUF659  33 gcsillDgwtdkkgrslinflvscpkG.tvFlksvdassekktaeylaelldkvieevgaenVvqvitdnasnykkagklleekyptifwtpcaahcln 130
                  +++++Dgw + +g+s+in+++ +p+G + F++s  a  + +t+e+la+ + +vie+vg++++  ++ d+a+n +k ++l++ek   +f + c++h+ln
  CCE30254.1  17 RLTLVTDGWINVRGESIINYMLVTPEGgAHFHSSETAGVNSHTGEFLAQRMMNVIEKVGVRHINAICCDSAANQQKEVQLVQEKLTRVFDIECISHQLN 115
                 579***********************8799999999999************************************************************ PP

      DUF659 131 lmledilklkwvkevleka 149
                 l+++dilkl+ + e+++ a
  CCE30254.1 116 LVIKDILKLSPFAETMQCA 134
                 ***************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1861.78
//
Query:       CCE30255.1  [L=255]
Description: uncharacterized protein CPUR_04103 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0065   16.9   1.2     0.0065   16.9   1.2    2.2  2  AFT       Transcription factor AFT
  ------ inclusion threshold ------
      0.042   13.9   2.2      0.094   12.8   2.2    1.6  1  FLYWCH    FLYWCH zinc finger domain


Domain annotation for each model (and alignments):
>> AFT  Transcription factor AFT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.2   7.3e-07    0.0065      63     109 ..      75     124 ..      39     125 .. 0.69
   2 ?    0.7   0.3     0.075   6.7e+02      66      95 ..     217     248 ..     136     254 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.3e-07
                 .........XXXXXXXXXX----EEEEEEETT.TTEEEEEEEE..---SS CS
         AFT  63 eeetsskkkkkkravsrynsCPfrvratyslk.rkkWsivvvn..nehsh 109
                 ++e  s+++  ++  sr  +CPfrv+a+  ++ ++ W+ +vv+  ++h+h
  CCE30255.1  75 GKERVSRSSGIRNHNSRLWNCPFRVQASCKVRlNNMWEYSVVSgrEKHNH 124
                 3444555666778889999************94467**999983355666 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.075
                 ......XXXX.XXXXXX---.-EEEEEEETTT CS
         AFT  66 tsskkkkkkr.avsrynsCP.frvratyslkr 95 
                 +s ++++++  + ++++sCP fr r+  ++++
  CCE30255.1 217 MSLSSMNSRAiSGTKKSSCPaFRKRTKPTVRH 248
                 33333333330335677888788887766665 PP

>> FLYWCH  FLYWCH zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.2   1.1e-05     0.094      24      62 .]      87     124 ..      79     124 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
                 -SS-EEEEEGGGTTS----EEEEE..TTEEEE-S-.-SS CS
      FLYWCH  24 rngktyWrCskyrklkCrArvvteegdgriisvkgeHnH 62 
                 +++++ W C  + +  C++r+  +  +++++s +++HnH
  CCE30255.1  87 NHNSRLWNCPFRVQASCKVRLNNM-WEYSVVSGREKHNH 124
                 3799********************.************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2112.07
//
Query:       CCE30256.1  [L=269]
Description: uncharacterized protein CPUR_04104 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-67  225.9   0.1    1.1e-66  225.7   0.1    1.0  1  Trp_DMAT  Tryptophan dimethylallyltransferase


Domain annotation for each model (and alignments):
>> Trp_DMAT  Tryptophan dimethylallyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.7   0.1   6.1e-71   1.1e-66     108     362 ..       4     263 ..       1     264 [. 0.91

  Alignments for each domain:
  == domain 1  score: 225.7 bits;  conditional E-value: 6.1e-71
                 HHHHHHH.STT---HHHHHHHHHHS--HHHHHHHHH..GGGTTTS----EEEEEEEETTTEEEEEEEE-THHHHHHHT--HHHHHHHHHHHH.CS..GC CS
    Trp_DMAT 108 lerlaqlavpgvdlewfdhfkealllseeeeaklae..kgekskkaksqvflafdlkkggkivlKaYffPrlkalatgqsaeelvfdairal.kp.gee 202
                 +++laq +  g+dlewf  fk++l+l+e+e+a l++  ++  ++++k+q+ la+dlk ++++ lK+Yf+P lk++atg+s+++l+fd++ +l ++   +
  CCE30256.1   4 VQKLAQIQ-AGIDLEWFSDFKDDLTLNESESAILQSnvNELVKEQIKTQNKLALDLK-ESQFALKVYFYPHLKSVATGKSTHDLIFDSVFKLsQKhESS 100
                 78999997.****************9********9999999999*************.69********************************8556789 PP

                 CHHHHHHHHHHHHHC......E----EEEEEEEEESS-CCC--EEEEEEESEESHHHHHHHHTTTTT-SH.HHHHHHHHHHHHH.HHCT---EE-.... CS
    Trp_DMAT 203 lepalklleeylesr......pkkeklrpellsiDcvdpsksRlKiYlrtpstsfdsvrdvmtLGGrlddeeteeglellrelwklllglpegfr.... 291
                 ++pa+++l++y+ +r      ++   l+++lls+D++dp+ksR+KiYl ++ +s+  ++d++tLGGr+ d++t++gle+lrelw  ll++p g+     
  CCE30256.1 101 IQPAFQVLRDYVLRRnhssevDQHRALHARLLSCDLIDPAKSRVKIYLQEQTVSLPAMEDLWTLGGRRVDASTMDGLEMLRELW-SLLKVPTGHLeypk 198
                 ************99999****889999*****************************************888*************.99999997774443 PP

                 ......---...............EEEEEEE-TT-SS-EEEEEEE-T..TS-HHHHHHHHHHHHHHCT-HHHHHHHH CS
    Trp_DMAT 292 ......plpeksktekdesslssgllfyfelkpgkelPepKvYipvrhygenDlaiaraleeffeklgwgeaaesye 362
                       +           ++ +   l++++l+ ++++Pep+vY+ v+  g+nD++i +al+ f++++g +++a++y 
  CCE30256.1 199 gymelgE----------IPNEQLPSLVNYTLHRNDPMPEPQVYFTVF--GMNDAEISNALTIFLQRHGFADMAKKYR 263
                 3332221..........3333445889********************..**************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2005.61
//
Query:       CCE30257.1  [L=388]
Description: uncharacterized protein CPUR_04105 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-108  363.2   0.1   2.1e-108  363.0   0.1    1.0  1  Trp_DMAT  Tryptophan dimethylallyltransferase


Domain annotation for each model (and alignments):
>> Trp_DMAT  Tryptophan dimethylallyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.0   0.1  1.2e-112  2.1e-108       2     362 ..      26     382 ..      25     383 .. 0.94

  Alignments for each domain:
  == domain 1  score: 363.0 bits;  conditional E-value: 1.2e-112
                 HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTGGGC-S--ECSTC-SS--TTSTT--SEEEEEETTT.....TEEEEEE--B-TTBTSTTBTT- CS
    Trp_DMAT   2 qrfWwkttgpllaslLeeagYsveqqyehLlffrkvvvPaLGprpaskrspkwkslltddgsPiElSwnfsssgdkkptvRfaiepigplagteedpln 100
                 qr Ww++t+p++a++L++agYsv++qy+hL++f+++++P LG +p++  +++w s+lt+ g P+ElS+n+++     ++vR+a+epi++ +gte+dp n
  CCE30257.1  26 QRLWWHSTAPMFAAMLDNAGYSVHDQYRHLSIFKTHIIPFLGVYPTKG-QERWLSILTRCGLPLELSLNCTD-----SVVRYAYEPINEMTGTEKDPSN 118
                 89*******************************************766.59*******************98.....9********************* PP

                 -CHHHHHHHHHHHH.STT---HHHHHHHHHHS--HHHHHHHHHGGGTTTS----EEEEEEEETTTEEEEEEEE-THHHHHHHT--HHHHHHHHHHHHCS CS
    Trp_DMAT 101 qqatrellerlaqlavpgvdlewfdhfkealllseeeeaklaekgekskkaksqvflafdlkkggkivlKaYffPrlkalatgqsaeelvfdairalkp 199
                 + ++   +++laq +  g+dlewf +fk++l+l+e+e+a l++++  ++++k+q+ la+dlk ++++ lK+Yf+P lk++atg+s++ l+fd++ +l++
  CCE30257.1 119 TLPIIGSVQKLAQIQ-AGIDLEWFSYFKDELTLDESESAILQDTELVKEQIKTQNKLALDLK-ESQFALKVYFYPHLKSIATGNSTHFLIFDSVFKLSQ 215
                 *************97.****************9********99999****************.69********************************88 PP

                 ..GCCHHHHHHHHHHHHHC......E----EEEEEEEEESS-CCC--EEEEEEESEESHHHHHHHHTTTTT-SH.HHHHHHHHHHHHH.HHCT---EE- CS
    Trp_DMAT 200 .geelepalklleeylesr......pkkeklrpellsiDcvdpsksRlKiYlrtpstsfdsvrdvmtLGGrlddeeteeglellrelwklllglpegfr 291
                  +++++pa+++l +y+++r      ++   l+++lls+D++dp+ksR+KiYl ++ +s+  ++d++tLGGr+ d++t++gl++lrelw  ll++p g+ 
  CCE30257.1 216 kHDSIQPAFQALCDYVSRRndssevDQHRALHARLLSCDLIDPAKSRVKIYLQEQTVSLPAMEDLWTLGGRRVDASTMDGLDMLRELW-SLLKVPTGHL 313
                 8****************99******889999*****************************************888*************.9999999777 PP

                 ..........---...............EEEEEEE-TT-SS-EEEEEEE-T..TS-HHHHHHHHHHHHHHCT-HHHHHHHH CS
    Trp_DMAT 292 ..........plpeksktekdesslssgllfyfelkpgkelPepKvYipvrhygenDlaiaraleeffeklgwgeaaesye 362
                           +           ++ +   l++++l+ ++++Pep+vY+ v+  g+nD++i +al+ f++++g +++a++y 
  CCE30257.1 314 eypkgymelgE----------IPNEQLPSLVNYTLHRNDPMPEPQVYFTVF--GMNDAEISNALTIFLQRHGFADMAKKYR 382
                 44433332221..........3333445889********************..**************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2995.17
//
Query:       CCE30258.1  [L=288]
Description: uncharacterized protein CPUR_04106 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-62  210.6   0.2    2.6e-62  210.3   0.2    1.1  1  BCIP      p21-C-terminal region-binding protein


Domain annotation for each model (and alignments):
>> BCIP  p21-C-terminal region-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   0.2   1.5e-66   2.6e-62       1     206 []      36     228 ..      36     228 .. 0.92

  Alignments for each domain:
  == domain 1  score: 210.3 bits;  conditional E-value: 1.5e-66
        BCIP   1 evnVdFeffdpeee.dfhgiknLlrqlffldaeevdlseLadlileqktvGsvvkvdgeesDpvygllsvlnlkkhkekecikqlkeyllekakksass 98 
                 +++V+Fe+f++++  df+g+k Llrqlf+ da  +++s+Ladlil+q+t+Gs+vkvdg+e D  + +l+vln   ++eke ++++++yl+eka+ +as 
  CCE30258.1  36 MLDVEFEWFNFDPAiDFQGVKSLLRQLFDVDAGFFNMSALADLILSQPTIGSTVKVDGKEHDA-FVMLTVLNTFINREKEPMRDVIKYLTEKANINAS- 132
                 689************************************************************.*********777778****************999. PP

        BCIP  99 kkklkklLssskdkkvglliseRliNiPvevvpplykmLleeiewaqeeeeekesykfthylilskvykevkskedekkkkkkkkkkkkkkkseedeli 197
                  + ++++L+  +d++vgl++seRliN+P+ev+pp+y+mLl+e+e+a e++   e+y+f+hyli+sk+y+ev+s+ d   ++++kk     ++++e+ ++
  CCE30258.1 133 LAAIPDILN--SDRHVGLVLSERLINVPIEVAPPMYSMLLDELEAAVEDK---EPYDFSHYLIVSKTYTEVESALDG--EHRRKK-----QAKDEAMTF 219
                 ********5..6789********************************888...*******************99874..222222.....22367889* PP

        BCIP 198 yfhpEdeil 206
                  fh+Ede+l
  CCE30258.1 220 HFHMEDEVL 228
                 *******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2265.46
//
Query:       CCE30259.1  [L=593]
Description: related to vacuolar protein sorting-associated protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-09   37.5   0.5    2.6e-09   37.0   0.5    1.1  1  Vps5      Vps5 C terminal like
    6.1e-09   35.8   0.0    1.1e-08   35.0   0.0    1.4  1  PX        PX domain
     0.0036   17.5   1.6      0.075   13.3   0.1    2.4  2  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.039   13.8   0.9      0.082   12.7   0.9    1.6  1  DUF429    Protein of unknown function (DUF429)
      0.041   14.0   0.5      0.078   13.1   0.5    1.4  1  NST1      Salt tolerance down-regulator


Domain annotation for each model (and alignments):
>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.5   7.3e-13   2.6e-09      47     233 ..     294     480 ..     291     483 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 7.3e-13
        Vps5  47 iellvsqrkelasataelakslesLaslelskslsralsqlaeveerikellerqaeqdvltLgetideylrligsvksvfeqRvklwqkwqsaeqels 145
                 ++ +v+ r+ l  a  +++  l+s+   e +++l++a+++l  v +++ ++++ qa +   t g   +   +    vk+ +++R+ l +   ++++  +
  CCE30259.1 294 VDKMVKARRGLGLAESDYGVKLSSMHVQEPHPGLANAYKKLGRVIQTMGDYHAAQATAQAATVGDPFQYHSQDSFIVKESLTNRQILIRDFLQSQEVTR 392
                 67899*************************************************************9999999999********************99* PP

        Vps5 146 kkkeqleKlekaaksqqdklqqlkkeveelerkvqeaekeFeeisetikkElerFetervedfknvvekyLesaiesqkevielWetf 233
                  k +++++l++++  ++dk++++   ++e+++   ++ k+ +++++++ ++  ++    ++d++ ++ +y    ie+++  ++l et 
  CCE30259.1 393 SKLNAADRLKASSSVRRDKVDEAITALDEARQAESDLYKKTHRVTHNLLHDRRKWFARTAADLRASIREYVLREIEAERRTLSLLETV 480
                 *******************************************************************************999998886 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   3.1e-12   1.1e-08      10     112 ..     137     238 ..     128     239 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 3.1e-12
                 EEEEETTSSEEEEEEEEEETTS....SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSH CS
          PX  10 eretsgskkhsyylyevelktg....akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrnse 104
                 er+   +kk+ +  + v+++       +++ v+R +s+F++L ++L +  p+  +P  P++ +     + +ee  ++ r++++++++  ++++ l++++
  CCE30259.1 137 ERT---GKKDPVLRFDVHTNLPsfrtTQYRDVRRLHSEFVKLAQHLVSANPEALVPAVPPPITAAG--AGTEEDDNRVRAMMQRWFNYTCSNETLMRDD 230
                 433...77888888888888888899999*********************************9988..999**************************** PP

                 HHHHHHHS CS
          PX 105 vlteFLev 112
                 ++  F e+
  CCE30259.1 231 EMVLFVES 238
                 **999987 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   2.1e-05     0.075      41      71 ..     324     354 ..     319     355 .. 0.86
   2 ?    2.9   0.1     0.038   1.3e+02      14      44 ..     407     437 ..     395     444 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.1e-05
      TPR_12  41 hpltattlrnLgrlyralgryeeAlelleea 71 
                 hp++a+++  Lgr+ + +g+y +A++  + a
  CCE30259.1 324 HPGLANAYKKLGRVIQTMGDYHAAQATAQAA 354
                 9999999999999999999999999987765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.038
      TPR_12  14 rrlgrydeAlellekaleiarrllGpdhplt 44 
                  r+ + deA++ l++a+++ + l+ ++h  t
  CCE30259.1 407 VRRDKVDEAITALDEARQAESDLYKKTHRVT 437
                 577889************9999999888655 PP

>> DUF429  Protein of unknown function (DUF429)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.9   2.3e-05     0.082      62     163 ..     429     554 ..     334     585 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      DUF429  62 ggRaaDraarkllarrgasvfpvpar.aalaag........kglserafgllpklrevdelldarpelrgrvvEvhPeaafvalnggaplakkk.ktae 150
                  ++++ r++++ll  r+++   + a+  a             + ++r++ ll+ +r   + +da  +l++   E+hP aa  + + +a+++ +k + ++
  CCE30259.1 429 LYKKTHRVTHNLLHDRRKWFARTAADlRA---SireyvlreIEAERRTLSLLETVRPDIRSIDASGGLSRLGREAHPTAASLRRTSLASSQGPKgDAWS 524
                 45566666666663336666666665333...23347777777889***********99************************99*********98899 PP

      DUF429 151 graeRrellara.................i 163
                 g  +R +  +                   +
  CCE30259.1 525 GVPRRSDATRSTsgsfmgkvpeendgaseD 554
                 999999988877777655555554444331 PP

>> NST1  Salt tolerance down-regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.5   2.2e-05     0.078      44     129 ..     392     478 ..     352     480 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.2e-05
        NST1  44 rsnsnnqneesstslstsksvaittssarsvknnppsvssaalrsakkvskdrsiwntssqE.ereklkeFWlsLgEeERReLvkvE 129
                 rs+ n  ++ +++s +++ +v    +  + +++ ++ + +++ r ++++ +dr +w   +    r  ++e+ l   E ERR L  +E
  CCE30259.1 392 RSKLNAADRLKASSSVRRDKVDEAITALDEARQAESDLYKKTHRVTHNLLHDRRKWFARTAAdLRASIREYVLREIEAERRTLSLLE 478
                 4444444444444444444455555555666666777888999*************988887469****************997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4310.44
//
Query:       CCE30260.1  [L=506]
Description: related to cop9 (constitutive photomorphogenic),subunit 6 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-10   41.3   1.2    5.3e-10   39.7   1.2    1.8  1  MitMem_reg  Maintenance of mitochondrial structure and functi
    1.2e-06   28.5   0.0    2.4e-06   27.5   0.0    1.5  1  JAB         JAB1/Mov34/MPN/PAD-1 ubiquitin protease


Domain annotation for each model (and alignments):
>> MitMem_reg  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   1.2   5.9e-14   5.3e-10       2     109 ..     333     462 ..     332     464 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 5.9e-14
  MitMem_reg   2 aeeigvehllkpsiqdas...stlstglnrqyyslkilqerldlikdYlkkve.................egelpvnheilrnlqkllnllP...hlet 77 
                 + ei+++ + + ++ d +    ++++ l+++ +++k+l++r++l+  Yl+ +                  +++++++h ilr++ +l+n+l       +
  CCE30260.1 333 SDEINIQSIDQGTA-DLTreeDEMIAALTTKANAVKMLHSRIRLLTTYLQHLPpsyinghtmsstidtigADQTTPSHCILRQILALVNRLDlivPTHK 430
                 55665555554222.33345579******************************88888877777777776557889999************75444444 PP

  MitMem_reg  78 eelekefnvetnDvllvvyLasltrsilalne 109
                 +e+e e+ +e+n+v l+ ++++l++s++++ +
  CCE30260.1 431 QEFEAELEREANNVSLTNLMSALVQSLNDARQ 462
                 68*************************99876 PP

>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   2.6e-10   2.4e-06       2     105 ..      93     199 ..      92     207 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.6e-10
                 SSCEEEEEHHHHHHHHHHHHHH..HHHTS--EEEEEEEESSSEEEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHC.TT.SEEEEEEEESSS CS
         JAB   2 svqavhleslvllkildhalrt..ekeeeevmGlliGelnddttveitnvfalpfeetekdvdavsldqeylekksellkklr.gr.ervvGWYhshpd 96 
                 s+ +v +++lvl+ ++dh++r   +++e  v+G ++G++n++  +   + f+ + +++++ v    ld    ++  +++  +   r + +vGWY+   +
  CCE30260.1  93 SLLQVVVHPLVLFGVSDHVSRHfiRQQEGPVVGAILGQQNGR-EITMEHTFECQLKKSSEAVGGYLLDIGRFKSRLDQMTTVHmDReLGLVGWYTIVTG 190
                 6789*************9999733344468************.999****************999999887777777777766456799*****86555 PP

                 S-SS--HHH CS
         JAB  97 itvwlsevd 105
                  +  + +v 
  CCE30260.1 191 SGPLPVHVP 199
                 555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3734.19
//
Query:       CCE30261.1  [L=635]
Description: related to capsular associated protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-20   70.9   8.6    2.6e-16   59.6   6.9    3.0  2  Glyco_transf_90  Glycosyl transferase family 90


Domain annotation for each model (and alignments):
>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   3.1e-05      0.55      69      96 ..     204     231 ..     142     245 .. 0.80
   2 !   59.6   6.9   1.4e-20   2.6e-16     104     322 ..     358     613 ..     348     618 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 3.1e-05
  Glyco_transf_90  69 lqLlrkypgklpDlelmfncdDrPvvkk 96 
                       +++ ++   lpD++l fn++D P v  
       CCE30261.1 204 TDMMARFLQYLPDMDLAFNIHDEPRVVL 231
                      5666777788**************9864 PP

  == domain 2  score: 59.6 bits;  conditional E-value: 1.4e-20
  Glyco_transf_90 104 aappPlfsycgdeetlDivfPdwsfwgwpevnikrwslllkelkegnkkvkweerepyaywkGnpsvae......tReeLlkcnrskkelvdar 191
                      ++  P+fs ++ +++ Di++P   +w+ + +             +++k ++w++++++ yw+G+ +         +R+   ++ ++ ++  +a 
       CCE30261.1 358 HDLFPIFSQSKMSSYSDIIYPSPWYWSGKVT------------YNEAKDLSWNDKDAQLYWRGSTTGGFgrdgswKRHHRQRLVQKLTHAPQAD 439
                      4678*****************9999977766............355667799999999999999876540001123444444444444555555 PP

  Glyco_transf_90 192 ltkq............................................dekkeskegvke.ssledqckhkYkiyieGvaasvsekyilacdsl 240
                      + ++                                             +++ ++ gvk+ ++++d  ++++ + ++G a s ++  +l  +s 
       CCE30261.1 440 VLEMetvgggdqtheapsngilrqikrsevdallnvrfshvgqcdpadCQAQIKHFGVKDmVDMNDAWRYRFLLDMDGNAFSGRFYALLQSRSQ 533
                      5555889**************************************99633345556777636999***************************** PP

  Glyco_transf_90 241 vllvkpeyydffsreLkplehYvPikskdklrdlkeavdwgna.hdekaqeiaeegseFireeLkmddvydYmfhLlteYakl 322
                      v+++ + ++++  + Lkp++hYvP++   + +d  e+v++  +  + +a+++a+++s+++ + L+  d+  ++f+Ll eYa++
       CCE30261.1 534 VFKQ-AIFQEWHRERLKPWVHYVPMSM--RGHDWVELVRFYSSrSNTRAEAMARASSDWAGKTLRKVDMEAWFFRLLLEYARV 613
                      *986.79******************99..7889999998776515679*********************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4531.95
//
Query:       CCE30262.1  [L=515]
Description: uncharacterized protein CPUR_04110 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-09   38.5   0.0    4.4e-09   37.1   0.0    1.7  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.19   12.5   0.8       0.35   11.6   0.8    1.3  1  Rxt3            Histone deacetylation protein Rxt3


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   4.9e-13   4.4e-09       2      91 ..     394     504 ..     393     506 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 4.9e-13
                     EEEEE-TT-EEEEE-SS--................--TT.-.EEEEEEEEE....ET-B--EEE...............---TT-EEEEE-..B- CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfe................keegsgqrrltvllyLnekeseeGGelelyekdk.....eavkikpkkgrlvlFesdell 75 
                      v+ry +g ey++H+D                    +e++++  +t+llyLn  +++eGGe ++y  +      +a+ ++p  g +++F+ +e +
      CCE30262.1 394 RVYRYVPGAEYRCHIDGAWppsgirpdgtymydasPAEKKQSSLFTFLLYLN--DDFEGGETTFYMPAIregtlNAYPVRPVMGAVAVFPHGESK 486
                     689**99*********988***************96667689*********8..78*****999777668899999***************8775 PP

                     T...EEE--B.-SS-EEEE CS
  2OG-FeII_Oxy_3  76 p...HevlpvtkggeRlsl 91 
                         He++ v++ g ++++
      CCE30262.1 487 GallHEGTSVRR-GAKYII 504
                     599*******66.599987 PP

>> Rxt3  Histone deacetylation protein Rxt3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.8   3.9e-05      0.35      67     119 ..      35     104 ..       9     107 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.9e-05
        Rxt3  67 kkskeekskdeseaekklekkkkrtpvnvp.................ekkDlhvtlliLpkLekYastvr 119
                 k++++++++ + ea+kk+ k++ ++++ +p                 ++++l++t+  L +L +Y ++++
  CCE30262.1  35 KRKRKAQAQAHPEASKKAAKTTSTQSIVTPppddsahsepkqlqtviSDEELDITIETLTTLAQYPGLTK 104
                 111111111111111111111111111111345566777788889989*****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1159  (0.0646439); expected 358.6 (0.02)
Passed bias filter:                      779  (0.0434492); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 3733.73
//
Query:       CCE30263.1  [L=772]
Description: related to peptide transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-121  407.0  38.0   1.7e-121  406.8  38.0    1.0  1  OPT              OPT oligopeptide transporter protein
  ------ inclusion threshold ------
      0.069   13.6  12.9        0.1   13.1   4.9    3.9  3  SNARE_assoc      SNARE associated Golgi protein
        0.7   10.1   7.2        3.1    8.1   7.2    2.1  1  DUF3093          Protein of unknown function (DUF3093)
        3.2    8.3   6.1       0.44   11.0   0.1    2.6  2  DUF4231          Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.8  38.0  3.9e-125  1.7e-121       2     615 ..      78     742 ..      77     743 .. 0.96

  Alignments for each domain:
  == domain 1  score: 406.8 bits;  conditional E-value: 3.9e-125
         OPT   2 lTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk........................lslnpgpftikEnvliqtmas 76 
                 lT+R++v++ +l+++ +++ +++++++++v+is  ++ l+a+++gka+a +lp+                        +++npgp++ kE++++ ++a 
  CCE30263.1  78 LTFRSIVVASALAAFQAVMSQIYSFKPTSVTISGTFIVLIAYWVGKAWAALLPRgdlqeknwtekggqgplplrirlaRFINPGPWNLKEHTVCAITAT 176
                 8************************************************************************************************** PP

         OPT  77 aaatlalatglivvipalelygqsagfgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegeeksrlkfflivflgsfvwgl 175
                 +a++ a++  +++++ ++  y+ ++++++ il ++s++l+G+g+ g+lR++ v+  + +++s+++t++ l+ lh ++ + ++ l++f++ f+g++++++
  CCE30263.1 177 SASNAAASITVFTAQDLF--YDLPPNAATIILSVISIGLFGYGLCGVLRPICVWHVESVYWSSIPTIKTLQGLHWQDVKSSKPLRVFWYSFVGMAAYEF 273
                 ******************..**********************************************************99******************* PP

         OPT 176 fplylfpalssfswltwiapknv.....vlanlf.......glgllpltfdwnviaayiGsglivplwvavnmliGavlswgiliPllyysngwypayl 262
                 fp+y+fp+l+s+s+ + ++ k++     +l+nlf       glgl+ l++dw++++         pl+ +v++ iG+++++  ++++ yy+n w++++ 
  CCE30263.1 274 FPAYIFPWLNSISIPCLASMKATgvtaeTLTNLFggatnneGLGLFSLSLDWQYTS--------LPLKLQVHQAIGFLVCFAAMLGI-YYTNAWDAKSQ 363
                 ******************9998877777788888*********************9........5**********************.*********** PP

         OPT 263 p.............ydvteildedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksarsprteeddrhrrlmrk.ykdv 347
                 p             y +++++   g+ld++++ +yg++ l++++a  +++ +aai +li+h +l++g d  +a+ks   +    ddrh++ m k y++v
  CCE30263.1 364 PfmstrlrtaggkaYPTSKVF-VGGILDKTAFAKYGIPRLTGSFAYALFMANAAIGALIAHCALFWGGDFVKAYKSS--RAGRFDDRHHAHMAKhYREV 459
                 *************99888888.9*****************************************************9..99999999999986549*** PP

         OPT 348 pmwwylallvlslvigiivvealftqlpvwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmq 446
                 p+wwy+++lv s+++g++vv    ++lpvw+++ all++++++  s+++++  g   +++++ l+++++g+++p rp+ n++f a+++++++++ ++  
  CCE30263.1 460 PWWWYVLILVFSFILGLVVVVRENVTLPVWAYVAALLVGIVISPLSTLLLARFGN--GISTNNLSKMLAGLMVPERPIGNMYFSAWSHSVISNCVNLCG 556
                 *******************************************************..****************************************** PP

         OPT 447 DLKtGhllkasPraqfvaqliGtlvgavvniavlkllvkaygdict.adasnaftaPqakvfaavavl.lvggk........kglpwafllgavapfil 535
                 DLK+G +lk++Pr +f++q++Gt++g +vn+av+  +v+a ++++t  d+s a+++ +++++++ a   ++++         + +p ++++ga++++i 
  CCE30263.1 557 DLKMGEYLKIPPRVMFLTQIYGTVLGGFVNYAVMVSIVDAHRELLTdSDGSAAWSGASIQSYNTNAASwALAKYlygaestySLVPIGLAIGAGIVAIH 655
                 ****************************************************************999877777689999**877889999999999999 PP

         OPT 536 llllkkfpkkstarkl..plplafavgfylppsl.....sialligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiafl 615
                  ++ + +p+ +  +    + p ++ +++y+p++       ++ +i g++++++l+++++  ++ y+y++  +++    ++ +i++f 
  CCE30263.1 656 RIFSHFVPRIRGLALTeiNMPQLIQYAGYIPYNQsqtcvILSWIITGFFSQFYLRNYKPRIFRDYMYLVTGAFDGASLFVLFILSFS 742
                 9999999977777666999999999999999999888753377999****************************9999999999886 PP

>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.23     1e+03      22      43 ..     107     127 ..      82     195 .. 0.59
   2 ?   13.1   4.9   2.3e-05       0.1      16     112 ..     408     504 ..     399     512 .. 0.76
   3 ?    2.5   0.1     0.042   1.9e+02      18      41 ..     570     593 ..     561     646 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.23
  SNARE_assoc  22 vtslgallGaslayllgrylgr 43 
                  vt+ g+++  ++ay++g+ ++ 
   CCE30263.1 107 VTISGTFI-VLIAYWVGKAWAA 127
                  34444444.3455555555542 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.3e-05
  SNARE_assoc  16 lllgtlvtslgallGaslayllgrylgr.kalrrkllsekrvka.lerlverygf.lallllrllpivPrdlvnyvaGltrvsfkrFflatfiGsipw 110
                  + l +  +++gal++ +  ++ g ++   k   r+ +  +r +a  +++ ++  + +++l+l ++ i+   lv +v     ++++ +++a ++G+++ 
   CCE30263.1 408 YALFMANAAIGALIAHCALFWGGDFVKAyK-SSRAGRFDDRHHAhMAKHYREVPWwWYVLILVFSFIL--GLVVVVRENVTLPVWAYVAALLVGIVIS 502
                  45678899******************9953.4443333333333466666665654999999999998..9***********************9987 PP

  SNARE_assoc 111 al 112
                   l
   CCE30263.1 503 PL 504
                  55 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.042
  SNARE_assoc  18 lgtlvtslgallGaslayllgryl 41 
                  +++l+ + g++lG++++y+++  +
   CCE30263.1 570 VMFLTQIYGTVLGGFVNYAVMVSI 593
                  57899999**********987555 PP

>> DUF3093  Protein of unknown function (DUF3093)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.2   0.00069       3.1       7      50 ..     458     501 ..     455     512 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00069
     DUF3093   7 wvplwwWllaalvalaaalvaae.vglavavlvaavlvalavval 50 
                  vp+ww++l+++++++++lv++   +++++v+++ v+++l+ +++
  CCE30263.1 458 EVPWWWYVLILVFSFILGLVVVVrENVTLPVWAY-VAALLVGIVI 501
                 59***********999666555415555555553.3333333333 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.8       2.5   1.1e+04      25      47 ..      83     104 ..      77     127 .. 0.48
   2 ?   11.0   0.1   9.9e-05      0.44       8      58 ..     451     501 ..     445     515 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.5
     DUF4231  25 ivlgallpilvs......sklgagvsvlk 47 
                 iv++  l+++++      s       + +
  CCE30263.1  83 IVVASALAAFQAvmsqiyS-------FKP 104
                 4555555555443333332.......222 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 9.9e-05
     DUF4231   8 kkasrakrrfrllrlitivlgallpilvssklgagvsvlkiltallsalva 58 
                   a+++++  ++  ++++v++++l ++v+  +++  +v+++++all  +v+
  CCE30263.1 451 HMAKHYREVPWWWYVLILVFSFILGLVVVVRENVTLPVWAYVAALLVGIVI 501
                 5799*************************7788888999998888876653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 5042.38
//
Query:       CCE30264.1  [L=279]
Description: uncharacterized protein CPUR_04112 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-11   42.3   1.1      2e-08   34.5   1.1    2.2  1  APH             Phosphotransferase enzyme family
    5.8e-05   22.8   0.0    9.1e-05   22.1   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
      0.089   12.1   0.0       0.12   11.6   0.0    1.3  1  EcKinase        Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   1.1   3.4e-12     2e-08      36     205 ..      84     237 ..      55     259 .. 0.64

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 3.4e-12
                 HHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHH CS
         APH  36 eirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesat 133
                 ++r+e+a+l+++ak+   pvP+ l++ + ++   l  al+e   g  l++     +   l  a+ ++ a+l +     lp+ ++l+q            
  CCE30264.1  84 RLRNEAAVLQFVAKHTTiPVPKFLDLWEENGLVHLKTALVEN--GIELRN----VDESLLSTAIMSVTAQLESD---ILPQLRRLRQ----------NF 163
                 567777777777777667777777644333333335555555..444444....12234444444555555333...3333333333..........22 PP

                 HCCCGCCTCCHHHHHHHHHHHHHHHH--S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHH CS
         APH 134 arllaselldlleeleeqvlaalaallpg....elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDl 205
                  +++ +el+  l  ++  +  +  + +p+     ++ vl+H Dl  +N+lvdp+  +++ ++D+e+ag  p  +Dl
  CCE30264.1 164 MGSPNPELPM-LPPRRF-WDWKGTRVWPSmtkdTDDYVLCHTDLDRQNILVDPNTFKIVSILDWETAGFFPQEWDL 237
                 2233333333.222222.222233344445555779********************************99998887 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.5e-08   9.1e-05     141     183 ..     194     237 ..     181     244 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.5e-08
                     HGG-EEEE-S--SGGGEEE.-CTTEEE.E--GTT-EEEEHHHHH CS
  Choline_kinase 141 lespvvfcHnDlqegNillnkeekklv.lIDFEYagynyrgfDl 183
                        + v+cH Dl  +Nil++ ++ k+v + D+E ag+ ++ +Dl
      CCE30264.1 194 DTDDYVLCHTDLDRQNILVDPNTFKIVsILDWETAGFFPQEWDL 237
                     445689*************98887765277**********9998 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.1e-05      0.12     209     257 ..     192     237 ..     114     252 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.1e-05
    EcKinase 209 ekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQlsrygSpalDL 257
                 +k+++ +vl+H Dl ++Ni++  +   +++ v ++D+ ++ + +   DL
  CCE30264.1 192 TKDTDDYVLCHTDLDRQNILVDPN---TFKIVSILDWETAGFFPQEWDL 237
                 5677778*************9665...6789999999887776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2132.74
//
Query:       CCE30265.1  [L=285]
Description: uncharacterized protein CPUR_04113 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-10   41.8   0.3    2.5e-07   30.9   0.0    2.1  2  APH             Phosphotransferase enzyme family
    0.00026   20.7   0.0    0.00042   20.0   0.0    1.3  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
       0.11   13.3   0.0       0.19   12.4   0.0    1.5  1  RNA_polI_A14    Yeast RNA polymerase I subunit RPA14
       0.23   10.7   0.1       0.39   10.0   0.1    1.4  1  EcKinase        Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00019      0.84      34      60 ..      82     109 ..      53     161 .. 0.82
   2 !   30.9   0.0   5.5e-11   2.5e-07     157     204 ..     185     236 ..     130     260 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHHHHHTT-.B--B-CTT CS
         APH  34 aeeirrevallrlLakagv.pvPevlag 60 
                 a +ir+e+a+l+++ak+   pvPe l++
  CCE30265.1  82 ADRIRNEAAVLQFVAKHTTiPVPEFLDL 109
                 5789***********99889****9984 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 5.5e-11
                 HHH--S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHH CS
         APH 157 aallpg....elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyD 204
                 ++ +p+     ++ vl+H Dl  +N+lvdp+  +++ ++D+e+ag  p  ++
  CCE30265.1 185 KRVWPSmtkdTDDYVLCHTDLDRQNILVDPNTFKIVSILDWETAGFFPQEWE 236
                 3444446667889*******************************98766555 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   9.3e-08   0.00042     141     183 ..     194     237 ..     180     246 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 9.3e-08
                     HGG-EEEE-S--SGGGEEE.-CTTEEE.E--GTT-EEEEHHHHH CS
  Choline_kinase 141 lespvvfcHnDlqegNillnkeekklv.lIDFEYagynyrgfDl 183
                        + v+cH Dl  +Nil++ ++ k+v + D+E ag+ ++ ++l
      CCE30265.1 194 DTDDYVLCHTDLDRQNILVDPNTFKIVsILDWETAGFFPQEWEL 237
                     445689*************98887765277*****998887776 PP

>> RNA_polI_A14  Yeast RNA polymerase I subunit RPA14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.3e-05      0.19      48      74 ..     140     167 ..      92     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.3e-05
  RNA_polI_A14  48 tglsvdtelss.vlsQLkRiqRdlrGLP 74 
                   +  sv+ +l+s +l QL+R+ R++ G P
    CCE30265.1 140 AITSVTAQLESdILPQLRRLRRNFMGSP 167
                   44455556554389**********9977 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   8.8e-05      0.39     209     246 ..     192     226 ..     123     232 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 8.8e-05
    EcKinase 209 ekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQ 246
                 +k+++ +vl+H Dl ++Ni++  +   +++ v ++D+ 
  CCE30265.1 192 TKDTDDYVLCHTDLDRQNILVDPN---TFKIVSILDWE 226
                 5667778*************9655...56777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2137.15
//
Query:       CCE30266.1  [L=281]
Description: uncharacterized protein CPUR_04114 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-12   46.4   0.6    1.1e-09   38.5   0.6    2.1  1  APH             Phosphotransferase enzyme family
    3.4e-05   23.5   0.0    5.2e-05   22.9   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
      0.029   14.0   0.0       0.47   10.0   0.0    2.1  2  RIO1            RIO1 family
      0.073   12.4   0.0       0.11   11.8   0.0    1.3  1  EcKinase        Ecdysteroid kinase
       0.15   12.8   0.0       0.29   11.9   0.0    1.5  1  RNA_polI_A14    Yeast RNA polymerase I subunit RPA14


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.6   3.2e-13   1.1e-09      36     205 ..      84     237 ..      75     260 .. 0.71

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 3.2e-13
                 HHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHH CS
         APH  36 eirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesat 133
                 ++r+e+a+l+++ak+   pvPe la+ + ++   l  al+e   g  l++     +++ ll        a+ +v   ++ l+++    l +lr l +  
  CCE30266.1  84 RLRNEAAVLQFVAKHTTiPVPEFLALWEENGLVHLKTALVEN--GIELRN-----VDESLL------STAITSV---TAQLESDI---LPQLRRLRRNF 163
                 678888888888877777888888754444444445566655..444444.....222222......2233333...22223333...45556666666 PP

                 HCCCGCCTCCHHHHHHHHHHHHHHHH--S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHH CS
         APH 134 arllaselldlleeleeqvlaalaallpg....elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDl 205
                  +++++el+  +  ++  + a+ ++ +p+     ++ vl+H Dl  +N+lvdp+  +++ ++D+e+ag+ p  ++l
  CCE30266.1 164 MGSPDPELPV-IPPRRF-WQAKEKRVWPSmtkdTDECVLCHTDLDRQNILVDPNTFKIVSILDWETAGYFPQEWEL 237
                 6779999999.666666.77888888888888999*********************************98877776 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.4e-08   5.2e-05     140     183 ..     193     237 ..     178     258 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.4e-08
                     CHGG-EEEE-S--SGGGEEE.-CTTEEE.E--GTT-EEEEHHHHH CS
  Choline_kinase 140 elespvvfcHnDlqegNillnkeekklv.lIDFEYagynyrgfDl 183
                     +   + v+cH Dl  +Nil++ ++ k+v + D+E agy ++ ++l
      CCE30266.1 193 KDTDECVLCHTDLDRQNILVDPNTFKIVsILDWETAGYFPQEWEL 237
                     445569**************98887765277*******9998887 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.041   1.5e+02      50     102 ..      80     136 ..      48     163 .. 0.65
   2 ?   10.0   0.0   0.00013      0.47     112     146 ..     185     219 ..     162     228 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.041
                 HHHHHHHHHHHHHHHHHHTT.--S--EEE.EETTEEEEE--E..ETTEEGGBHHHCG CS
        RIO1  50 lvklwaekEfrnLkrleeag.vpvPkpie.lkrhvlvmefig..edgvaapklkdve 102
                  +    ++E + L+ ++++  +pvP+ ++ ++++ lv       e+g+++ ++++  
  CCE30266.1  80 YIADRLRNEAAVLQFVAKHTtIPVPEFLAlWEENGLVHLKTAlvENGIELRNVDESL 136
                 555566789999998887766999998753788888854333336888888887765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE CS
        RIO1 112 eevleemrklykeaglvHaDLSeyNvlvdedkvvi 146
                 + v  +m k   e+ l H DL   N+lvd + + i
  CCE30266.1 185 KRVWPSMTKDTDECVLCHTDLDRQNILVDPNTFKI 219
                 455668999999*****************995433 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     3e-05      0.11     209     249 ..     192     229 ..     116     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3e-05
    EcKinase 209 ekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQlsr 249
                 +k+++ +vl+H Dl ++Ni++  +   +++ v ++D+ ++ 
  CCE30266.1 192 TKDTDECVLCHTDLDRQNILVDPN---TFKIVSILDWETAG 229
                 6788889*************9655...67788888887765 PP

>> RNA_polI_A14  Yeast RNA polymerase I subunit RPA14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.1e-05      0.29      48      74 ..     140     167 ..     106     170 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.1e-05
  RNA_polI_A14  48 tglsvdtelss.vlsQLkRiqRdlrGLP 74 
                   +  sv+ +l+s +l QL+R+ R++ G P
    CCE30266.1 140 AITSVTAQLESdILPQLRRLRRNFMGSP 167
                   34455555554389**********9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2302.23
//
Query:       CCE30267.1  [L=213]
Description: uncharacterized protein CPUR_04115 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1818.46
//
Query:       CCE30268.1  [L=690]
Description: uncharacterized protein CPUR_04116 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.3   2.2       0.25   11.5   2.2    1.5  1  zf-CCHC   Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.2   1.4e-05      0.25       2      17 ..     364     379 ..     363     380 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.4e-05
                 CTSSSSSSSSTTTTST CS
     zf-CCHC   2 kCynCGepGHiardCp 17 
                 +C++CG  GH+  +C+
  CCE30268.1 364 ACFRCGIAGHYPANCS 379
                 7**********99995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 5028.68
//
Query:       CCE30269.1  [L=225]
Description: uncharacterized protein CPUR_04117 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   13.7   0.0       0.19   11.2   0.0    2.0  2  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase
       0.13   12.2   0.0       0.31   11.0   0.0    1.6  1  DUF4357   Domain of unknown function (DUF4357)


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.055     5e+02       2      24 ..      37      54 ..      36      58 .. 0.81
   2 ?   11.2   0.0   2.1e-05      0.19     169     206 ..      68     106 ..      66     137 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.055
                E-TT.S-EEE.......-THHHHC CS
       RVT_1  2 pKkgpgsyRp.isllsvdykalnk 24
                +K + g+ R  +     dy+alnk
  CCE30269.1 37 KKAN-GGCRFcV-----DYRALNK 54
                7888.9****55.....******9 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 2.1e-05
                 EEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE CS
       RVT_1 169 Dililsks.keelqelleaveewlkesglkinpeKtklv 206
                 D+li+s + k ++ + + +v ++l+++gl++  eK+++ 
  CCE30269.1  68 DVLIYSGGsKADHLRKVLEVLRRLRDAGLSLGIEKCSFG 106
                 99*****97778************************997 PP

>> DUF4357  Domain of unknown function (DUF4357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.4e-05      0.31      25      42 ..      24      41 ..      13      44 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.4e-05
     DUF4357 25 FsSPSaAAsvvlGrsaNG 42
                 sS+SaAA vvl + aNG
  CCE30269.1 24 ASSSSAAAPVVLVKKANG 41
                69***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1693.06
//
Query:       CCE30270.1  [L=68]
Description: uncharacterized protein CPUR_04118 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 556.34
//
Query:       CCE30271.1  [L=273]
Description: uncharacterized protein CPUR_04119 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-11   45.0   0.5    2.8e-09   37.3   0.5    2.1  1  APH             Phosphotransferase enzyme family
    0.00023   20.8   0.0    0.00034   20.3   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
       0.08   13.7   0.0       0.16   12.7   0.0    1.5  1  RNA_polI_A14    Yeast RNA polymerase I subunit RPA14
       0.18   11.1   0.0       0.26   10.6   0.0    1.3  1  EcKinase        Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.5   6.2e-13   2.8e-09      35     205 ..      82     236 ..      72     259 .. 0.70

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 6.2e-13
                 HHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCH CS
         APH  35 eeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesa 132
                  ++r+e+a+l+++ak+   pvPe la+ + ++   l  al+e   g  l++     +   l  a+ ++ a+l +         d+    l +lr l + 
  CCE30271.1  82 DRLRNEAAVLQFVAKHTTiPVPEFLALWEENGLVHLKTALVEN--GIELRN----VDESLLSTAIMSVTAQLES---------DI----LPQLRRLRRN 161
                 5678888888888888777888888855444444445666666..444444....1223333344444444432.........23....4445555555 PP

                 HHCCCGCCTCCHHHHHHHHHHHHHHHH--S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHH CS
         APH 133 tarllaselldlleeleeqvlaalaallpg....elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDl 205
                   +++++el+  +  ++  ++ + ++ +p+     ++ vl+H Dl  +N+lvdp+  +++ ++D+e+ag  p  ++l
  CCE30271.1 162 FMGSPDPELPV-IPPRRF-WRPKEKRVWPSmtkdTDEYVLCHTDLDRQNILVDPNTFKIVSILDWETAGFFPQEWEL 236
                 55669999999.666666.66777777777777999********************************987766665 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   7.6e-08   0.00034     141     183 ..     193     236 ..     181     262 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.6e-08
                     HGG-EEEE-S--SGGGEEE.-CTTEEE.E--GTT-EEEEHHHHH CS
  Choline_kinase 141 lespvvfcHnDlqegNillnkeekklv.lIDFEYagynyrgfDl 183
                        + v+cH Dl  +Nil++ ++ k+v + D+E ag+ ++ ++l
      CCE30271.1 193 DTDEYVLCHTDLDRQNILVDPNTFKIVsILDWETAGFFPQEWEL 236
                     445689*************98887765277*****998888776 PP

>> RNA_polI_A14  Yeast RNA polymerase I subunit RPA14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.5e-05      0.16      48      74 ..     139     166 ..     104     169 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.5e-05
  RNA_polI_A14  48 tglsvdtelss.vlsQLkRiqRdlrGLP 74 
                   + +sv+ +l+s +l QL+R+ R++ G P
    CCE30271.1 139 AIMSVTAQLESdILPQLRRLRRNFMGSP 166
                   67888888876489**********9977 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   5.8e-05      0.26     209     246 ..     191     225 ..     118     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.8e-05
    EcKinase 209 ekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQ 246
                 +k+++ +vl+H Dl ++Ni++  +   +++ v ++D+ 
  CCE30271.1 191 TKDTDEYVLCHTDLDRQNILVDPN---TFKIVSILDWE 225
                 5667778*************9655...56777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1924.00
//
Query:       CCE30272.1  [L=760]
Description: related to peptide transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.6e-119  399.6  40.6     3e-119  399.4  40.6    1.0  1  OPT          OPT oligopeptide transporter protein
  ------ inclusion threshold ------
        2.6    8.6   5.7       0.43   11.1   0.1    2.6  2  DUF4231      Protein of unknown function (DUF4231)
        5.3    7.2   8.0          7    6.8   0.9    3.5  3  FxsA         FxsA cytoplasmic membrane protein
        9.5    6.7  22.5      0.063   13.8   5.3    4.0  4  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  399.4  40.6  6.8e-123    3e-119       2     615 ..      78     730 ..      77     731 .. 0.93

  Alignments for each domain:
  == domain 1  score: 399.4 bits;  conditional E-value: 6.8e-123
         OPT   2 lTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk........................lslnpgpftikEnvliqtmas 76 
                 lT+R++v++ +l+++ +++ +++ +++++v+is  ++ l+a+++gka+a++lp+                        +++npgp++ kE++++ ++a 
  CCE30272.1  78 LTFRSIVVASALAAFQAVMSQIYAFKPTSVTISGTFIVLIAYWVGKAWAVLLPRgdlqekkwtekggrgplprlirlaRFINPGPWNLKEHTVCSITAT 176
                 8************************************************************************************************** PP

         OPT  77 aaatlalatglivvipalelygqsagfgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegeeksrlkfflivflgsfvwgl 175
                 +a++ a++  +++++ ++  y+ ++++++ il ++s++l+G+g+ g+lR++ v+  + +++s+++t++ l+ lh ++ + ++ l++f++ f+g++++++
  CCE30272.1 177 SASNAAASITVFTAQDLF--YDLPPNAATIILSVISIGLFGYGLCGVLRPICVWHVESVYWSSIPTIKTLQGLHWQDVKSSKPLRVFWYSFVGMAAYEF 273
                 ******************..**********************************************************99******************* PP

         OPT 176 fplylfpalssfswltwiapknv.....vlanlf.......glgllpltfdwnviaayiGsglivplwvavnmliGavlswgiliPllyysngwypayl 262
                 fp+y+fp+l+s+s+ + ++ k++     +l+nlf       glgl+ l++dw++i+++      +pl+ +v++ iG+++++  ++++ yy+n w++++ 
  CCE30272.1 274 FPAYIFPWLNSISIPCLASMKTTgttaeTLTNLFggatnneGLGLFSLSLDWQYITSFQ---TSIPLKLQVHQAIGFFVCFAAMLGI-YYTNAWDAKSQ 368
                 *****************99998888888899999**********************976...*************************.*********** PP

         OPT 263 p.............ydvteildedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksarsprteeddrhrrlmrk.ykdv 347
                 p             y +++++   g+ld++++ + g++ l++++a  +++ +aai +li+h +l++g d  +a+ksa  +    ddrh++ m k y++v
  CCE30272.1 369 PfmstrlrtadgktYPTSKVF-VGGILDKTAFAKFGIPRLTGSFAYAMFMANAAIGALIAHCALFWGGDFVKAYKSA--RAGRFDDRHHAHMAKhYREV 464
                 *************98888888.9******************************************************..99999999999986549*** PP

         OPT 348 pmwwylallvlslvigiivvealftqlpvwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmq 446
                 p+wwy+++lv s+++g++vv    ++lpvw+++ all++++++  s+++++  g   +++++ l+++++g+++p rp+ n++f a+++++++++ ++  
  CCE30272.1 465 PWWWYVLILVFSFILGLVVVVRENVTLPVWAYVAALLVGIVISPLSTLLLARFGN--GISTNNLSKMLAGLMVPERPIGNMYFSAWSHSVISNCVNLCG 561
                 *******************************************************..****************************************** PP

         OPT 447 DLKtGhllkasPraqfvaqliGtlvgavvniavlkllvkaygdict.adasnaftaPqakvfaavavl.lvggk...kglpwafllgavapfilllllk 540
                 DLK+G +lk++Pr +f++q++Gt++g +vn+av+  +v+a ++++t  ++s a+++ +++++++ a   ++++     g ++ ++ ++ a+++ +++++
  CCE30272.1 562 DLKMGEYLKIPPRVMFLTQIYGTVLGGFVNYAVMVSIVDAHRELLTeSNGSAAWSGANIQSYNTNAASwALAKYlygAGSTYILVPIGLAIGAGIVAIH 660
                 ****************************************************************99987666656654555666656666666666666 PP

         OPT 541 kfpkkstarklplplafavgfylppsl..sialligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiafl 615
                 ++      ++  l+   ++  y+  ++   ++ +i g++++++l+++++  ++ y+y++  +++    ++ +i++f 
  CCE30272.1 661 RIV-----SH--LIQYAGYIPYNQSQTcvILSWIITGFFSQFYLRNYKPRIFRDYMYLVTGAFDGASLFVLFILSFS 730
                 533.....22..233333444455555543388999****************************9999999999886 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   1.5       2.6   1.2e+04      25      37 ..      83     101 ..      77     126 .. 0.48
   2 ?   11.1   0.1   9.7e-05      0.43       8      58 ..     456     506 ..     450     520 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.6
     DUF4231  25 ivlgallpilvs......s 37 
                 iv++  l+++++       
  CCE30272.1  83 IVVASALAAFQAvmsqiyA 101
                 4444444444442222221 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 9.7e-05
     DUF4231   8 kkasrakrrfrllrlitivlgallpilvssklgagvsvlkiltallsalva 58 
                   a+++++  ++  ++++v++++l ++v+  +++  +v+++++all  +v+
  CCE30272.1 456 HMAKHYREVPWWWYVLILVFSFILGLVVVVRENVTLPVWAYVAALLVGIVI 506
                 5799*************************7788888999998888876653 PP

>> FxsA  FxsA cytoplasmic membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.026   1.2e+02      13      49 ..     337     373 ..     329     399 .. 0.75
   2 ?    6.8   0.9    0.0016         7      21      46 ..     464     489 ..     455     498 .. 0.86
   3 ?   -3.4   0.4       2.3   1.1e+04      21      41 ..     637     657 ..     628     667 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.026
        FxsA  13 llvlvasaiGvlatllllvltallGallvrrqgrral 49 
                 l ++v +aiG+++ ++ +++     a+ +++q +   
  CCE30272.1 337 LKLQVHQAIGFFVCFAAMLGIYYTNAWDAKSQPFMST 373
                 56799**************999999999998875543 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0016
        FxsA  21 iGvlatllllvltallGallvrrqgr 46 
                 + +++ +l+lv++++lG+++v r+ +
  CCE30272.1 464 VPWWWYVLILVFSFILGLVVVVRENV 489
                 679****************9988765 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.3
        FxsA  21 iGvlatllllvltallGallv 41 
                 +G++ t +l+ +  ++Ga +v
  CCE30272.1 637 YGAGSTYILVPIGLAIGAGIV 657
                 566666666666666666555 PP

>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.11   4.7e+02      21      78 ..     106     159 ..      81     192 .. 0.51
   2 ?   13.8   5.3   1.4e-05     0.063      15     112 ..     412     509 ..     404     517 .. 0.78
   3 ?    2.5   0.5     0.042   1.9e+02      18      42 ..     575     599 ..     568     651 .. 0.67
   4 ?   -3.4   0.2       2.9   1.3e+04      20      32 ..     708     720 ..     680     733 .. 0.49

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.11
  SNARE_assoc  21 lvtslgallGaslayllgrylgrkalrrkllsekrvkalerlverygflallllrllp 78 
                   vt+ g+++  ++ay++g+ ++    r  l ++k+ ++     +    +++ l+r++ 
   CCE30272.1 106 SVTISGTFI-VLIAYWVGKAWAVLLPRGDLQEKKWTEK---GGRGPLPRLIRLARFIN 159
                  334444444.3455555555543333333333333333...33223445555555555 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.4e-05
  SNARE_assoc  15 glllgtlvtslgallGaslayllgrylgr.kalrrkllsekrvkalerlverygf.lallllrllpivPrdlvnyvaGltrvsfkrFflatfiGsipw 110
                   + + +  +++gal++ +  ++ g ++   k++r   ++ ++    +++ ++  + +++l+l ++ i+   lv +v     ++++ +++a ++G+++ 
   CCE30272.1 412 AYAMFMANAAIGALIAHCALFWGGDFVKAyKSARAGRFDDRHHAHMAKHYREVPWwWYVLILVFSFIL--GLVVVVRENVTLPVWAYVAALLVGIVIS 507
                  35778999*******************99544444444444444466666666664899999999998..9***********************9987 PP

  SNARE_assoc 111 al 112
                   l
   CCE30272.1 508 PL 509
                  55 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.042
  SNARE_assoc  18 lgtlvtslgallGaslayllgrylg 42 
                  +++l+ + g++lG++++y+++  + 
   CCE30272.1 575 VMFLTQIYGTVLGGFVNYAVMVSIV 599
                  57899999**********9986555 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 2.9
  SNARE_assoc  20 tlvtslgallGas 32 
                   +++++ga+ Gas
   CCE30272.1 708 YMYLVTGAFDGAS 720
                  2333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 5067.89
//
Query:       CCE30273.1  [L=677]
Description: related to peptide transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-111  373.0  40.8   3.6e-111  372.8  40.8    1.0  1  OPT       OPT oligopeptide transporter protein


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.8  40.8    2e-115  3.6e-111       2     538 ..      78     663 ..      77     673 .. 0.95

  Alignments for each domain:
  == domain 1  score: 372.8 bits;  conditional E-value: 2e-115
         OPT   2 lTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk........................lslnpgpftikEnvliqtmas 76 
                 lT+R++v++ +l+++ +++ +++ +++++v is  ++ l+a+++gka+a +lp+                        +++npgp++ kE++++ ++a 
  CCE30273.1  78 LTFRSIVVASALAAFQAVMSQIYAFKPTSVGISGTFIVLIAYWVGKAWAALLPRgdlqekqwtekggqgtlplrirlaRFINPGPWNLKEHTICAVTAT 176
                 8************************************************************************************************** PP

         OPT  77 aaatlalatglivvipalelygqsagfgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegeeksrlkfflivflgsfvwgl 175
                 +a++ a++  +++++ ++  y+ ++++  +il ++s++l+G+g++g+lR++ v+  + +++ +++t++ l+ lh ++ + ++ l++f++ f+g++v+++
  CCE30273.1 177 SASNAAASITVFTAQDLF--YNLPPNATIVILSVISIGLFGYGLSGILRPICVWHVESVYWGSIPTIKTLQGLHWQDVKSSKPLRVFWYSFVGMAVYEV 273
                 ******************..**********************************************************99******************* PP

         OPT 176 fplylfpalssfswltwiapknv.....vlanlf.......glgllpltfdwnviaayiGsglivplwvavnmliGavlswgiliPllyysngwypayl 262
                 fp+y+fp+l+s+s+ + ++ k++     +l+nlf       glgl+ lt+dw++i++   s +  pl+ +v++ iG+++++  ++++ yy+n w++++l
  CCE30273.1 274 FPAYIFPWLNSISVPCLASMKATgstaaILTNLFggstnneGLGLFSLTLDWQYITS---SSMSLPLKLQVHQAIGFLICFAAMLGV-YYTNAWDAKSL 368
                 *****************99988777777888888**********************8...56*************************.*********** PP

         OPT 263 p.............ydvteildedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksarsprteeddrhrrlmrk.ykdv 347
                 p             y +++++   gvl+++++ + g++ l++++a  +++ +aai ++i+h +l++g d  +a+ksa  +    ddrh++ m k y++v
  CCE30273.1 369 PfmstrlwtaggkaYPTSKVF-VGGVLNKTAFAKFGIPRLTGTFAYAMFMANAAIGAMIAHCALFWGGDFVKAYKSA--RAGRFDDRHHAHMAKhYREV 464
                 *************99888888.9******************************************************..99999999999986549*** PP

         OPT 348 pmwwylallvlslvigiivvealftqlpvwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmq 446
                 p+wwy+++lv s+ +g++vv   +++lpvw+++l+ll++++l+ +s+++++  g   +++++ l+++++g+++p rp+ n++f a++++++  ++ +  
  CCE30273.1 465 PWWWYALILVFSFFLGLVVVVREKVTLPVWAYVLSLLVGIVLSPFSTLLLARFGN--GVATYNLSKMMAGLMIPERPIGNMYFSAWSHSVINSCAMMCL 561
                 *******************************************************..****************************************** PP

         OPT 447 DLKtGhllkasPraqfvaqliGtlvgavvniavlkllvkaygdict.adasnaftaPqakvfaavavl.lvggk.......kglpwafl.lgavapfil 535
                 DLK+G +lk++Pr +f++q++Gt++g ++n+av+  +v a ++++t  ++s+ +++  ++++++ a   ++++        ++l   +l +ga++++i 
  CCE30273.1 562 DLKMGEYLKIPPRVMFLTQIYGTILGGFINYAVMVSIVGAHRELLTgSNGSSTWSGAAIQSYNSNAASwALAKYlygaggtYSLVPIALaVGAGIVAIH 660
                 ****************************************************************99987666667887888555555551555555555 PP

         OPT 536 lll 538
                  +l
  CCE30273.1 661 RIL 663
                 444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4788.91
//
Query:       CCE30274.1  [L=266]
Description: probable chorismate mutase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2016.62
//
Query:       CCE30275.1  [L=672]
Description: probable CAF4 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-28   96.6  10.9    4.1e-06   27.4   0.6    6.0  6  WD40         WD domain, G-beta repeat
      7e-09   35.9   0.2      0.068   13.5   0.0    5.0  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.9e-05   23.5   5.3       0.53    8.9   0.1    4.9  5  Nup160       Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.041   13.9   0.2       0.13   12.3   0.7    1.5  2  Cep57_CLD    Centrosome localisation domain of Cep57
       0.63   10.6   2.7        1.8    9.1   2.7    1.7  1  APG6_N       Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.7e-06    0.0095       4      38 .]     315     350 ..     312     350 .. 0.73
   2 !   21.8   0.0   6.6e-08   0.00024       1      38 []     354     390 ..     354     390 .. 0.92
   3 !   22.8   0.1   3.3e-08   0.00012       4      38 .]     438     471 ..     436     471 .. 0.93
   4 !   10.0   0.1   0.00036       1.3      25      38 .]     531     544 ..     506     544 .. 0.78
   5 !   27.4   0.6   1.1e-09   4.1e-06       3      38 .]     550     584 ..     548     584 .. 0.87
   6 ?   -2.9   0.0       4.3   1.5e+04      13      38 .]     600     623 ..     595     623 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.7e-06
                 EEEEESSSS.EEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtsla.fspdgawlasGsdDgtvriWd 38 
                 +r +++H++ vt+l+   p g+ ++s+  D t+++Wd
  CCE30275.1 315 IRQIRAHKDtVTALDfDAPFGT-MVSAALDDTIKVWD 350
                 67889**555****84444444.556777*******9 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 6.6e-08
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+c+++l GH  sv++l  + + + la+G  D t+r+Wd
  CCE30275.1 354 GRCIGVLGGHtASVRAL--QVEDNILATGAADATIRLWD 390
                 68********888**99..778888****99*******9 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 3.3e-08
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l+tl++H + vt+l  +  g+ l+sGs D+t+r Wd
  CCE30275.1 438 LYTLEAHvDQVTAL--HFRGDVLVSGSADKTIRHWD 471
                 789****888****..999999*************9 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00036
                 EEEEETTSEEEEEE CS
        WD40  25 lasGsdDgtvriWd 38 
                 la+G+ Dg vr+Wd
  CCE30275.1 531 LACGTADGMVRLWD 544
                 799999*******9 PP

  == domain 5  score: 27.4 bits;  conditional E-value: 1.1e-09
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                   r+l GH + +t+l  + d+  l++Gs D+++riWd
  CCE30275.1 550 VHRSLVGHtGAITCL--QFDNVHLVTGSLDRSIRIWD 584
                 568999**777****..778888*************9 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 4.3
                 EEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40  13 vtslafspdgawlasG.sdDgtvriWd 38 
                 +ts+    d + ++++ +    v+++d
  CCE30275.1 600 ITSM--MFDARRIVTAaG-EDVVKVYD 623
                 5665..334444554426.88888887 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.096   3.4e+02      27      79 ..     313     363 ..     304     375 .. 0.76
   2 ?    3.6   0.0     0.022        80      35      68 ..     361     392 ..     340     397 .. 0.71
   3 !    9.6   0.0   0.00031       1.1      35      78 ..     442     483 ..     433     495 .. 0.84
   4 !   13.5   0.0   1.9e-05     0.068      50      90 ..     528     567 ..     523     569 .. 0.87
   5 ?    2.0   0.0     0.072   2.6e+02      51      89 ..     569     605 ..     565     608 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.096
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                   r+ ++   +++ +v++L +      ++ a  d ++++ d + g+++  l  +
   CCE30275.1 313 SRIRQI--RAHKDTVTALDFDAPFGTMVSAALDDTIKVWDLNAGRCIGVLGGH 363
                  555566..678889999999988888888889999999999999988766555 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.022
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                   ++  +vr+L  + ++++La + +d ++rl d +
   CCE30275.1 361 GGHTASVRAL--QVEDNILATGAADATIRLWDLS 392
                  5566677776..57899*************9976 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00031
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                  +++  +v++L+++  g +L+ + +d ++r  d e g++v++l+v
   CCE30275.1 442 EAHVDQVTALHFR--GDVLVSGSADKTIRHWDLERGRCVQTLDV 483
                  5566789999987..77**********************99986 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 1.9e-05
  ANAPC4_WD40  50 gklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  ++ La +++dg vrl d  sg+v +sl  ++  a+tcl++ 
   CCE30275.1 528 ETALACGTADGMVRLWDLRSGQVHRSLVGHTG-AITCLQFD 567
                  578*******************9888866666.7****986 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.072
  ANAPC4_WD40  51 klLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                    L+ +  d ++r+ d  +g +  ++ +++   +t++ +
   CCE30275.1 569 VHLVTGSLDRSIRIWDLRTGAIFDAYAYDNP--ITSMMF 605
                  568899999*****************99988..888876 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.022        80     235     253 ..     339     357 ..     335     361 .. 0.87
   2 ?    1.5   0.0     0.025        88     224     252 ..     368     396 ..     362     424 .. 0.74
   3 !    8.9   0.1   0.00015      0.53     219     268 ..     441     491 ..     427     503 .. 0.74
   4 ?    2.7   0.0     0.011        40     225     253 ..     523     551 ..     498     555 .. 0.74
   5 !    6.3   0.0   0.00086       3.1     224     252 ..     562     590 ..     557     598 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.022
                 EEETT-EEEEEETTTTEEE CS
      Nup160 235 alsrdgkLrvWnlltgkcl 253
                 ++ +d +++vW+l+ g+c+
  CCE30275.1 339 SAALDDTIKVWDLNAGRCI 357
                 6789***********9997 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.025
                 .....TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 224 avveigqtylfalsrdgkLrvWnlltgkc 252
                 +  ++++++l++   d ++r+W+l+  + 
  CCE30275.1 368 RALQVEDNILATGAADATIRLWDLSRSSY 396
                 4445589*****************97765 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00015
                 EEEET........TTTEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS- CS
      Nup160 219 ldvavavvei...gqtylfalsrdgkLrvWnlltgkclatidllrdeeaqdes 268
                 l + v+ v++     ++l++ s d+++r W+l+ g+c+ t d      a++ s
  CCE30275.1 441 LEAHVDQVTAlhfRGDVLVSGSADKTIRHWDLERGRCVQTLDVM--WAAAQAS 491
                 555556666666677899999*******************9988..3344444 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.011
                 ....TTTEEEEEETT-EEEEEETTTTEEE CS
      Nup160 225 vveigqtylfalsrdgkLrvWnlltgkcl 253
                   ++ +t l+  + dg +r+W+l++g++ 
  CCE30275.1 523 ALQVFETALACGTADGMVRLWDLRSGQVH 551
                 4445888899999************9975 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.00086
                 .....TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 224 avveigqtylfalsrdgkLrvWnlltgkc 252
                  + + ++ +l++ s+d+ +r+W+l+tg +
  CCE30275.1 562 TCLQFDNVHLVTGSLDRSIRIWDLRTGAI 590
                 456668999*****************865 PP

>> Cep57_CLD  Centrosome localisation domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.7   3.6e-05      0.13      86     170 ..     130     218 ..      83     226 .. 0.83
   2 ?   -3.8   0.0       3.1   1.1e+04      13      41 ..     467     495 ..     465     513 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.6e-05
   Cep57_CLD  86 mvesaekerkavlekqaslekekkqesselqaklekLek....LEkeylrLtatqklaekkikeLeekLkeEehqrklvqdkaaqlqte 170
                 m  + +k r+ v + ++ le++ +++++e +a l +++k    + +e+  L+ ++++a + i+e+++k+ + +  rk++ ++ a l++e
  CCE30275.1 130 MTDEGKKHRRRVSRGRKLLEEKGSTSHQEPRAGLSQVKKekaaMMHEFDLLSIRKSMASSEIREIDNKIANLHGMRKIILERLAGLEQE 218
                 77777888888888777777777666665555555544322226689999********************************9988765 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.1
   Cep57_CLD  13 irrLELersqAeknlkslskeaskykkvl 41 
                 ir+ +Ler +  ++l  + + a+ + +v+
  CCE30275.1 467 IRHWDLERGRCVQTLDVMWAAAQASASVS 495
                 88889999999999998888888777766 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.7   0.00049       1.8      18      92 ..     163     234 ..     126     252 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00049
      APG6_N  18 leqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeele 92 
                 l+q++ke+ a++   + l  +k+      +e++e+++++++l+  ++  le L+ le+e++ le ++ ++e  l+
  CCE30275.1 163 LSQVKKEKAAMMHEFDLLSIRKSM---ASSEIREIDNKIANLHGMRKIILERLAGLEQEEALLEHDIIDIEGRLD 234
                 455555555555544444444333...357889999999999999999999999999999999998888886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 4931.48
//
Query:       CCE30276.1  [L=580]
Description: uncharacterized protein CPUR_04124 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-27   96.4   0.0    4.3e-27   95.4   0.0    1.5  1  Cupin_8   Cupin-like domain
    2.6e-05   23.8   0.1     0.0049   16.4   0.0    2.8  3  Cupin_4   Cupin superfamily protein
     0.0034   17.8   0.0      0.019   15.4   0.0    2.0  2  JmjC      JmjC domain, hydroxylase
     0.0065   15.5   2.7     0.0098   15.0   2.7    1.2  1  DEC-1_N   DEC-1 protein, N-terminal region
  ------ inclusion threshold ------
        1.9    7.9   9.2        2.7    7.4   7.8    1.8  2  CAP_N     Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.0   1.2e-30   4.3e-27      11     249 ..     280     580 .]     270     580 .] 0.81

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 1.2e-30
     Cupin_8  11 kskPviikgalkdwpalqk..wtddeylleylkek..aedvkvsvektpdgeadsfkeneelkfvkpeeeemtfkdfldelearrdtrsep........ 97 
                   +P+i++++++ wpal+   w++    +eyl ++   +++ v ve ++  + +           +  +e m+f++fl+++  ++     p        
  CCE30276.1 280 PPRPIIFTDLVSSWPALTDrpWKS----REYLLSRtfGGRRLVPVEIGRSYVDE-----------TWGQELMSFRKFLSKYVVGDAVPPPPpppppppp 363
                 569************998767998....55554443345555556555532333...........345899******8887777665554477888888 PP

     Cupin_8  98 ..................................yaylqnanlasefpelkedsdlp.fateafgkkpe..................avnlWlGnsasv 143
                                                   + yl++ nl +++p+l++d ++p f+ + + + p                     n W+G+++++
  CCE30276.1 364 apstgptsgpscespavvpaaaaaaehagdvvgeVGYLAQHNLFQQIPSLRNDVSIPdFCWSTVRGYPTggddagvgakepppleepLLNAWFGPARTI 462
                 888888888888888888888888888888888899*****************7777655555655556677889999999999999999********* PP

     Cupin_8 144 sslHkDhyeNlycvvrGrKkftLfpPsdapflyeaslsptedgtvvssvdve.............epdlekfprlkda...kkalevtlnaGevLylPa 226
                 + lH D y+Nl+++v G+K ++L+ P+    ++++  ++  d +++s +dv              ++d+e+  r++++    +++e+ l +G++L +P 
  CCE30276.1 463 TPLHTDGYHNLLVQVVGTKYVRLYAPWARG-MRPRGVENGVDMSNTSALDVGllegwdegpegdtKMDEEELRRVRSEledAEYWECILGEGDTLLIPM 560
                 ***************************865.677776777788889999987899********99888888887777777779**************** PP

     Cupin_8 227 lWfHeVkslaeeplhlavnywyd 249
                 +W+H+V+sl  + ++ +v +w++
  CCE30276.1 561 GWWHYVRSL--S-VSFSVSFWWN 580
                 *******99..5.8********6 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.56     2e+03     205     267 ..      22      82 ..      17     112 .. 0.56
   2 !    4.2   0.0     0.007        25     129     155 ..     464     490 ..     451     517 .. 0.80
   3 !   16.4   0.0   1.4e-06    0.0049     173     209 ..     543     577 ..     518     579 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.56
                 EEEEECCEEHCCHHHCHHHHHHHHHHHHHHHCTSCHHCTCGTTTGGGTTS-HHHHHHHHHHHH CS
     Cupin_4 205 lSvglraptaaellesvldllldklpeiderlrdallravqargeidsdsidalaaqlsellr 267
                  S+ +r  + ++ll+++ d+ ++ ++ + ++ ++ ++   + +ge  +++ d l++q  +llr
  CCE30276.1  22 SSCVVRGLSLQTLLSWYRDATQKLITST-HDTQQTSPHGSDGTGES-AAANDLLTRQATSLLR 82 
                 5666777788888877777777777766.33333333322333332.2222444444444444 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.007
                 -SEE-SSEEEEEEEEC-EEEEEE-SCC CS
     Cupin_4 129 gpHyDdyDVfllQleGrkrWrvykptv 155
                 + H D y  +l+Q+ G+k+ r+y+p  
  CCE30276.1 464 PLHTDGYHNLLVQVVGTKYVRLYAPWA 490
                 56*********************9654 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 1.4e-06
                 S-SEEEEE-TT-EEEE-TT-EEEEEBBT-CCEEEEEE CS
     Cupin_4 173 epvedfvLepGDlLYlPrgviHqgvaedesltlSvgl 209
                 + + + +L  GD L +P g++H+ ++++  +++Sv++
  CCE30276.1 543 AEYWECILGEGDTLLIPMGWWHYVRSLS--VSFSVSF 577
                 45779**********************7..5555554 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.51   1.8e+03       4      20 ..     456     472 ..     454     482 .. 0.82
   2 !   15.4   0.0   5.4e-06     0.019      74     112 ..     539     577 ..     519     579 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.51
                 EE-TT-EEEEE--GGG- CS
        JmjC   4 lgmpksttpwhiedqgl 20 
                 +g+ +++tp h++ ++ 
  CCE30276.1 456 FGPARTITPLHTDGYHN 472
                 7999********97765 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 5.4e-06
                 HHTT---EEEEE-TT-EEEE-TT-EEEEEESSSEEEEEE CS
        JmjC  74 ekegipvyrfvqkpgefVfvfpgayHsvfnlgfniaeav 112
                 e e  +++++   +g+++ ++ g++H v +l  ++++++
  CCE30276.1 539 ELEDAEYWECILGEGDTLLIPMGWWHYVRSLSVSFSVSF 577
                 445669***************************999986 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   2.7   2.7e-06    0.0098      92     191 ..     327     430 ..     307     443 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.7e-06
     DEC-1_N  92 lgpqvGaalqsllplqsldgllGaaapapalaaapppapapvp........ddpapapaapqaaafaffnpanldassllgq..llaqlpavpaipagt 180
                 ++ + G+ l s+  + s + ++G+a p p +  +ppp+pap++        ++pa +paa    a a      +++ + l+q  l  q+p++ +  +  
  CCE30276.1 327 VDETWGQELMSFRKFLS-KYVVGDAVPPPPP-PPPPPPPAPSTgptsgpscESPAVVPAAA---AAAEHAGDVVGEVGYLAQhnLFQQIPSLRNDVS-I 419
                 56778888888888876.5688999887654.45666677766434333333333333333...334444556777889998777788888866544.6 PP

     DEC-1_N 181 ldflaqlrqfl 191
                 +df     + +
  CCE30276.1 420 PDFCWSTVRGY 430
                 77766555555 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.36   1.3e+03      69      92 ..     189     212 ..     184     257 .. 0.63
   2 ?    7.4   7.8   0.00076       2.7     246     261 ..     350     371 ..     330     398 .. 0.54

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.36
                 HHHHHHHHHH-HHHHHHHHHHHHH CS
       CAP_N  69 kefvelskkiggevaeqaelvkka 92 
                 ++ ++l ++++++v++ ++ v +a
  CCE30276.1 189 EKTLTLLEELDSQVHQRVKQVTTA 212
                 333334444444444444444443 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00076
                 X.....XXXXXXXX........ CS
       CAP_N 246 g.pppPpPpPppasvf.....e 261
                 + pppPpPpPpp++++     +
  CCE30276.1 350 AvPPPPPPPPPPPPAPstgptS 371
                 3244444444433333233330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.36
# Mc/sec: 4832.53
//
Query:       CCE30277.1  [L=541]
Description: uncharacterized protein CPUR_04125 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0095   15.8   1.1       0.51   10.2   0.1    2.6  2  Sec34            Sec34-like family
  ------ inclusion threshold ------
       0.03   14.8   0.8        9.7    6.7   0.1    2.9  2  DUF4140          N-terminal domain of unknown function (DUF41
      0.033   14.1   1.5      0.033   14.1   1.5    2.7  3  Wtap             WTAP/Mum2p family
       0.13   11.6  11.6       0.24   10.7   5.8    2.6  2  GAS              Growth-arrest specific micro-tubule binding
       0.34   10.7   9.1        0.6    9.9   3.4    2.4  2  DivIC            Septum formation initiator
       0.35   10.7   9.6          3    7.6   9.6    2.2  1  KASH_CCD         Coiled-coil region of CCDC155 or KASH
       0.41   10.8  10.2        3.2    7.9   2.9    2.9  2  bZIP_1           bZIP transcription factor
       0.44   11.0   4.6        8.6    6.9   0.4    2.7  2  Snapin_Pallidin  Snapin/Pallidin
        0.5   10.3   2.5       0.67    9.9   0.4    2.2  2  Sec20            Sec20
       0.53   10.2   7.9          9    6.2   3.6    2.5  2  Ax_dynein_light  Axonemal dynein light chain
       0.72   10.0  19.3      0.061   13.5   4.6    3.8  3  CENP-Q           CENP-Q, a CENPA-CAD centromere complex subun
          1    9.5   7.0        4.1    7.6   2.3    2.7  2  Med9             RNA polymerase II transcription mediator com
        1.1    9.0  10.6        2.6    7.8   3.8    2.5  2  DUF4201          Domain of unknown function (DUF4201)
        1.7    9.0   8.4       0.88   10.0   3.7    2.3  2  DUF4200          Domain of unknown function (DUF4200)
          2    8.6   6.4         18    5.5   0.2    2.5  2  Cnn_1N           Centrosomin N-terminal motif 1
        7.3    7.0  11.2       0.76   10.1   2.0    2.9  3  KxDL             Uncharacterized conserved protein
          9    6.8   5.8         14    6.2   0.5    2.5  2  FlaC_arch        Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00049      0.51      39      74 ..     407     442 ..     398     453 .. 0.88
   2 ?    3.4   0.1     0.059        63      31      67 ..     483     519 ..     478     532 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00049
       Sec34  39 ktsslheaceqlleeqkrleelaeeieekLkyFeel 74 
                   ++l+++ e+l  e+++l+++ ++++++L+ Fe+ 
  CCE30277.1 407 TEKELRNTIEELSLENRSLKDMLDNVSKRLHAFEAS 442
                 4579*****************************975 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.059
       Sec34  31 ekfksvsektsslheaceqlleeqkrleelaeeieek 67 
                 +k ++++e+  +  +++e+l +++++++++ ++ +ek
  CCE30277.1 483 QKTQDMEEQLAAATAHMERLEKDNRKMQKTLDKYREK 519
                 4444444444444444444444444444444443333 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0092       9.7      65      97 ..     392     438 ..     357     439 .. 0.74
   2 ?    5.5   0.1     0.022        23      68      93 ..     479     504 ..     451     523 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0092
     DUF4140  65 e.............e.lkalraeleeledelaaledelaaaearlaf 97 
                               +  k+lr+++eel  e + l+d l+++++rl +
  CCE30277.1 392 IstssgarrkgvpsRtEKELRNTIEELSLENRSLKDMLDNVSKRLHA 438
                 044555555555554489*************************9975 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.022
     DUF4140  68 kalraeleeledelaaledelaaaea 93 
                 +alr++ +  e++laa+++ ++++e+
  CCE30277.1 479 EALRQKTQDMEEQLAAATAHMERLEK 504
                 44455555555555555554444444 PP

>> Wtap  WTAP/Mum2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       2.8     3e+03      64     101 ..      23      62 ..      19      78 .. 0.61
   2 ?   -0.8   0.1       1.2   1.3e+03     124     146 ..     411     433 ..     400     447 .. 0.65
   3 ?   14.1   1.5   3.1e-05     0.033     111     153 ..     482     524 ..     477     526 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.8
        Wtap  64 eaenkleeaqeeLqalkftpdsqtGkrL..makcrvLeqE 101
                 ++++ ++ ++ +L+a  f+  +q+ ++   +  +++Le+ 
  CCE30277.1  23 SSDTTVAINEHTLAAGEFSNAAQSTTSIeaLRTLKLLEEH 62 
                 6677777888888888887665544433113444555544 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
        Wtap 124 qkkfveelkkaleeleelleele 146
                 +++++eel  +++ l+++l+ ++
  CCE30277.1 411 LRNTIEELSLENRSLKDMLDNVS 433
                 35555666666666666655554 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 3.1e-05
        Wtap 111 egrvakLeselalqkkfveelkkaleeleelleeleeevevlq 153
                  ++++ +e++la++++++e+l+k ++++++ l++ +e  evl+
  CCE30277.1 482 RQKTQDMEEQLAAATAHMERLEKDNRKMQKTLDKYREKWEVLK 524
                 5799**********************************99986 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.3     0.039        41      42      73 ..     408     439 ..     403     453 .. 0.61
   2 ?   10.7   5.8   0.00023      0.24      30      78 ..     480     528 ..     479     536 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.039
         GAS  42 eernekelseisqenkrlkepLkkaeeeveeL 73 
                 e++ ++ ++e+s en++lk+ L ++ + +   
  CCE30277.1 408 EKELRNTIEELSLENRSLKDMLDNVSKRLHAF 439
                 55666666666666666666666665555444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00023
         GAS  30 slKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlk 78 
                  l+++ ++++++ ++++ +++ ++++n++++++L k +e+ e L++ +k
  CCE30277.1 480 ALRQKTQDMEEQLAAATAHMERLEKDNRKMQKTLDKYREKWEVLKAGAK 528
                 589999**************************************98655 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.3     0.059        63      27      50 ..     409     432 ..     406     440 .. 0.80
   2 ?    9.9   3.4   0.00057       0.6      18      63 ..     484     529 ..     481     533 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.059
                 HHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC  27 aalqaelaklkaeneeLeaevkdL 50 
                 ++l +++++l+ en++L++ +++ 
  CCE30277.1 409 KELRNTIEELSLENRSLKDMLDNV 432
                 578889999999999999887776 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00057
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXX CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerARs 63 
                 + +++++++aa +a++++l ++n+++++ +++++   + +++ A+ 
  CCE30277.1 484 KTQDMEEQLAAATAHMERLEKDNRKMQKTLDKYREKWEVLKAGAKA 529
                 5789*****************************8766666666665 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   9.6    0.0028         3       4     112 ..     409     521 ..     406     533 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0028
    KASH_CCD   4 sdlistvadLqlnNkkLaeenskLkkavetaeetnakLteeieeLkkklkstQ..qalqkakllee..EleelkalvkeleEkrarlkaqnkqlekenq 98 
                 ++l +t+++L l N++L++    + k + + e ++++ +  + e  + ++ +     +++  l++     e l++ ++++eE+ a + a+ ++lek+n 
  CCE30277.1 409 KELRNTIEELSLENRSLKDMLDNVSKRLHAFEASSQHSAMALAESYRIMRPGSpvSVAVSPPLMKSrpGDEALRQKTQDMEEQLAAATAHMERLEKDNR 507
                 68889************99999999999999988888666666666666644411333344444441145789************************** PP

    KASH_CCD  99 sLiakiesLqeeni 112
                  +++ +++  e+ +
  CCE30277.1 508 KMQKTLDKYREKWE 521
                 ***99999888765 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.8      0.01        11      29      55 ..     409     435 ..     405     442 .. 0.89
   2 ?    7.9   2.9     0.003       3.2      19      60 ..     480     524 ..     471     528 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.01
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  29 eeLerrvkaLekeNksLkseleelkke 55 
                 +eL +  ++L+ eN sLk+ l++ +k 
  CCE30277.1 409 KELRNTIEELSLENRSLKDMLDNVSKR 435
                 799999****************99986 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.003
                 HHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  19 rsRqRKqaeieeLer...rvkaLekeNksLkseleelkkevekLk 60 
                 + Rq+ q   e+L+     ++ Lek N +++++l++++++ e Lk
  CCE30277.1 480 ALRQKTQDMEEQLAAataHMERLEKDNRKMQKTLDKYREKWEVLK 524
                 6788888888888752226889******************99998 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3     0.034        36      16      61 ..     409     454 ..     406     456 .. 0.86
   2 ?    6.9   0.4    0.0082       8.6      23      64 ..     479     519 ..     465     525 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.034
  Snapin_Pallidin  16 deldeklkelrqsQeeLleqldrlnekLkeleeaqeaevlpdlkey 61 
                      +el+++++el  + + L+++ld+ +++L+ +e   + ++++ +++y
       CCE30277.1 409 KELRNTIEELSLENRSLKDMLDNVSKRLHAFEASSQHSAMALAESY 454
                      678999**********************999998886667766666 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0082
  Snapin_Pallidin  23 kelrqsQeeLleqldrlnekLkeleeaqeaevlpdlkeyakK 64 
                      ++lrq+ +++ eql   ++ +++le+++  ++ ++l++y++K
       CCE30277.1 479 EALRQKTQDMEEQLAAATAHMERLEKDNR-KMQKTLDKYREK 519
                      57999999******************999.999999***999 PP

>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       4.6   4.9e+03      14      35 ..     422     443 ..     411     456 .. 0.49
   2 ?    9.9   0.4   0.00064      0.67       8      57 ..     479     528 ..     478     540 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.6
       Sec20  14 sqllsqevqqSeenleeldast 35 
                 ++ l++  ++  + l++++as+
  CCE30277.1 422 NRSLKDMLDNVSKRLHAFEASS 443
                 3333333344444444444444 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00064
       Sec20   8 eslraisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskk 57 
                 e+lr+  q + ++    +  +e l++  ++++k+ ++y +  +vl+ ++k
  CCE30277.1 479 EALRQKTQDMEEQLAAATAHMERLEKDNRKMQKTLDKYREKWEVLKAGAK 528
                 68999***************************************999877 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.015        16     118     159 ..     405     446 ..     391     455 .. 0.82
   2 ?    6.2   3.6    0.0085         9     131     176 ..     481     525 ..     472     540 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.015
  Ax_dynein_light 118 eqgkselekkikeLeeekeelekqvaelkaklealekreker 159
                       ++++el+++i+eL  e+++l++ + ++ ++l a e++++  
       CCE30277.1 405 SRTEKELRNTIEELSLENRSLKDMLDNVSKRLHAFEASSQHS 446
                      567899999**********************99999887765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0085
  Ax_dynein_light 131 Leeekeelekqvaelkaklealekrekerrqeeekkheeeieflkk 176
                      L+++ +++e+q+a  +a +e lek++ + +++   k++e+ e lk 
       CCE30277.1 481 LRQKTQDMEEQLAAATAHMERLEKDNRKMQKTL-DKYREKWEVLKA 525
                      566666666666666666666665554433333.333444444443 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1       0.2   2.1e+02       3      13 ..      63      74 ..      41     133 .. 0.69
   2 ?    2.8   1.1      0.12   1.3e+02      18      67 ..     406     455 ..     389     458 .. 0.78
   3 ?   13.5   4.6   5.8e-05     0.061      28      80 ..     479     531 ..     473     539 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.2
      CENP-Q  3 lrkLar.lpfPp 13
                +r+La  l++Pp
  CCE30277.1 63 HRQLAElLKLPP 74
                344455555555 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.12
      CENP-Q  18 dggkekeldfeklldekaaleaqLspelhslelLeaeiekeeralerdye 67 
                 + +ke    +e+l+ e+++l++ L+   + l+  ea  ++   al++ y+
  CCE30277.1 406 RTEKELRNTIEELSLENRSLKDMLDNVSKRLHAFEASSQHSAMALAESYR 455
                 66677777788888888888888888888888888888888888887776 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 5.8e-05
      CENP-Q  28 eklldekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaea 80 
                 e+l ++++  e qL+++  ++e Le++ +k++++l +  e+ + L++ aka +
  CCE30277.1 479 EALRQKTQDMEEQLAAATAHMERLEKDNRKMQKTLDKYREKWEVLKAGAKARR 531
                 566789999*****************************************976 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2      0.07        74      49      78 ..     405     434 ..     400     436 .. 0.89
   2 ?    7.6   2.3    0.0039       4.1      43      79 ..     483     519 ..     479     520 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.07
        Med9  49 drsveeqeaeieeleeqlakKrelLkkykn 78 
                 +r+ +e  + ieel+ +++  +++L + ++
  CCE30277.1 405 SRTEKELRNTIEELSLENRSLKDMLDNVSK 434
                 6899999******************98766 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0039
        Med9  43 relpgidrsveeqeaeieeleeqlakKrelLkkyknr 79 
                 ++ +++++  +   a++e le+ ++k ++ L ky+++
  CCE30277.1 483 QKTQDMEEQLAAATAHMERLEKDNRKMQKTLDKYREK 519
                 5678999999************************986 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.5      0.02        21       2      36 ..     409     443 ..     408     448 .. 0.89
   2 ?    7.8   3.8    0.0024       2.6      96     136 ..     481     521 ..     478     535 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.02
     DUF4201   2 rkkrnelsklrlklislkhqlakiqeklekkeelg 36 
                 ++ rn++++l+l++ slk  l +++++l+ +e  +
  CCE30277.1 409 KELRNTIEELSLENRSLKDMLDNVSKRLHAFEASS 443
                 5679*************************999866 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0024
     DUF4201  96 lkkelkekeerlaklrkelykvklerdklrkqneklkqqgg 136
                 l+++++++ee+la+  ++++++++++ k++k  +k +++ +
  CCE30277.1 481 LRQKTQDMEEQLAAATAHMERLEKDNRKMQKTLDKYREKWE 521
                 55566666666666666666666666666666666555544 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.63   6.7e+02      26      53 ..     408     435 ..     399     455 .. 0.52
   2 ?   10.0   3.7   0.00083      0.88      72     108 ..     482     518 ..     478     528 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.63
     DUF4200  26 eealkqreeelekkeqeleedllkfdkf 53 
                 e++l++  eel  +++ l++ l ++ k 
  CCE30277.1 408 EKELRNTIEELSLENRSLKDMLDNVSKR 435
                 3333333333333333333333333333 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00083
     DUF4200  72 rklkkekeaeikklkaeietlkseiekleekleeykk 108
                 r++++++e++++ ++a++e+l+++++k++++l++y++
  CCE30277.1 482 RQKTQDMEEQLAAATAHMERLEKDNRKMQKTLDKYRE 518
                 67899999**************************987 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2     0.017        18       3      35 ..     409     441 ..     403     453 .. 0.60
   2 ?    4.7   1.7     0.032        34      36      69 ..     483     516 ..     471     524 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.017
      Cnn_1N   3 rEqeeqidkLkKENFdLKLriyfLeerleklse 35 
                 +E+ ++i++L+ EN +LK  +    +rl++ + 
  CCE30277.1 409 KELRNTIEELSLENRSLKDMLDNVSKRLHAFEA 441
                 566666666666666666555555555555544 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.032
      Cnn_1N  36 eqkeellkenielkveveslqkelkekkkllrea 69 
                 ++ +++++++     ++e l+k++ +++k l++ 
  CCE30277.1 483 QKTQDMEEQLAAATAHMERLEKDNRKMQKTLDKY 516
                 3445555555555555566666655555555543 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       9.1   9.6e+03      21      37 ..      55      71 ..      53      78 .. 0.79
   2 ?    2.0   0.3      0.24   2.6e+02      21      52 ..     414     445 ..     406     454 .. 0.70
   3 ?   10.1   2.0   0.00072      0.76      30      79 ..     479     528 ..     477     531 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 9.1
        KxDL 21 tsgrlnkknreLlelna 37
                t++ l++ +r+L el +
  CCE30277.1 55 TLKLLEEHHRQLAELLK 71
                67788888888888765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.24
        KxDL  21 tsgrlnkknreLlelnalsqerlaklrarfkq 52 
                 t  +l  +nr L+++ + +++rl+ ++a  + 
  CCE30277.1 414 TIEELSLENRSLKDMLDNVSKRLHAFEASSQH 445
                 55666667777777777777777777766554 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00072
        KxDL  30 reLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkakla 79 
                 + L +  + ++e+la ++a++++  k+ ++++k L++ ++k + lka ++
  CCE30277.1 479 EALRQKTQDMEEQLAAATAHMERLEKDNRKMQKTLDKYREKWEVLKAGAK 528
                 578899999**********************************9999776 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.6      0.22   2.3e+02       3      32 ..     409     438 ..     408     443 .. 0.81
   2 ?    6.2   0.5     0.013        14       1      32 [.     484     515 ..     481     522 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.22
   FlaC_arch   3 delEnklsklsteletvkkeneelsksvee 32 
                 +el n +++ls e  ++k+ ++++sk ++ 
  CCE30277.1 409 KELRNTIEELSLENRSLKDMLDNVSKRLHA 438
                 578888999999999999999999988875 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.013
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksvee 32 
                 +++++E++l      +e ++k+n +++k++++
  CCE30277.1 484 KTQDMEEQLAAATAHMERLEKDNRKMQKTLDK 515
                 67789999999999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1401  (0.0781416); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.41
# Mc/sec: 3980.57
//
Query:       CCE30278.1  [L=1157]
Description: uncharacterized protein CPUR_04126 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-40  139.0   0.1    3.6e-40  137.9   0.1    1.6  1  VASt             VAD1 Analog of StAR-related lipid transfer d
    2.1e-23   82.4   0.0    3.8e-23   81.5   0.0    1.5  1  GRAM             GRAM domain
  ------ inclusion threshold ------
       0.26   10.6  16.0       0.63    9.3  16.0    1.6  1  NOA36            NOA36 protein
       0.74    7.9  14.2        1.5    7.0  14.2    1.4  1  Nop14            Nop14-like family
        1.3    8.2   4.1        3.4    6.8   3.7    1.9  2  Zip              ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> VASt  VAD1 Analog of StAR-related lipid transfer domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.9   0.1     1e-43   3.6e-40       2     154 .]     800     947 ..     799     947 .. 0.93

  Alignments for each domain:
  == domain 1  score: 137.9 bits;  conditional E-value: 1e-43
                 EEEEEESS-HHHHHHHHHSS-THH.HHHHHHH.TT-BS-H.HHSE.........EEEEEEEE--SSSS-SEEEEEEEEE..EEEEETT.EEEEEEEEE- CS
        VASt   2 lveevlpisvkalfellfgdksef.lkkfleerqkttdisvgpweeakekgkltRklsytkplkgsigpkqtkvtetqtilveeddly.yivvvtttkt 98 
                 l++e++p++++++++l+fg +s   + k+l+++qk+t+i++++ +   ++++++R++sy+kpl+gsigpkqtk++ t+t  +e+ dl+ ++++  +t+t
  CCE30278.1 800 LADETVPAPLGKVYNLVFGPGSVAwMGKWLSAEQKCTEIQMEDKKGL-TGENKSRTFSYIKPLNGSIGPKQTKCVVTET--MEQIDLEkSVNLSVSTQT 895
                 6899**************888876599999999******99999544.46*****************************..888889889********* PP

                 T.TSTTTTSEEEEEEEEEEEETTTE..E.EEEEEEEEEESS--TTHHHHHHHHHHH CS
        VASt  99 pldvPygdsFsvetryvitwgsknskstcrltvstkvefsksswlkgiIekgalkg 154
                 p +vPyg+ F+v+try+++w+++n   t r+++ ++ve+s+++wlkg+Iek++ +g
  CCE30278.1 896 P-EVPYGNLFTVKTRYCLSWAENNA--T-RVQINCTVEWSGKCWLKGTIEKNVNDG 947
                 *.******************99888..6.***********************9886 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   1.1e-26   3.8e-23       2     113 ..     532     639 ..     531     640 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 1.1e-26
                 HHHHHS----TT--EEEEEEEEEESS.SEEEEEEEEESSEEEEEE-STT---EEEEEGGGEEEEEE....-TT-TT-EEEEESS-..EEEEE--TTHHH CS
        GRAM   2 lfrkkfkellpeEkllatykCyllrdggpvqGrlyltnyrlcFrskplgsskkvvlpladikriekstsaanllengiqvetsskdlelaFagfvtrde 100
                 +f++ fk++++++ l+++y+C+l+r+ ++++Grly+++ +lcF+s++lg+ +++v+ + +i+++ek +s+a l++ng+ + t +   +  Fa+f +rd 
  CCE30278.1 532 DFHTLFKSVPDDDYLIEDYSCALQRE-ILAHGRLYVSEGHLCFSSNILGWTTTLVMSFDEIVSVEK-RSTALLFKNGLMISTLHA--KHIFASFTSRDA 626
                 79************************.***************************************.******************..8*********** PP

                 HHHHHHHHHHH-X CS
        GRAM 101 aiefieellkkah 113
                 ++++i + +k  h
  CCE30278.1 627 TYDLIVNIWKLGH 639
                 ******9999766 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  16.0   0.00018      0.63     231     302 ..     643     714 ..     633     720 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00018
       NOA36 231 rslkfgrqkqadgsddddddeedsdydaylkalasgddeddegdedddddddeedddeeeddedeeeeeeee 302
                 rs   g q +++g d+ ++ +++++ ++  +   sg+d+  ++d ddddddd++ d+e+ dde+  +eee++
  CCE30278.1 643 RSTLNGVQLEGTGGDKTEKVSSEQEAAEVEHHEPSGSDQMSDEDVDDDDDDDDDGDEEDGDDEEFYDEEEHN 714
                 666678888888888888888888877777777777666666665555555555555555555544444443 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  14.2   0.00041       1.5     349     419 ..     662     733 ..     636     773 .. 0.37

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00041
       Nop14 349 eededdfeedddlveseseeee......eeeeedeeeeedeeeee..eeeededdlsdleseeeeeedeleeelleeek 419
                 +  e++  e ++++ s+s++ +      +++++d+ +eed ++ee  +eee +++l++ +   +   de     +e+ek
  CCE30278.1 662 VSSEQEAAEVEHHEPSGSDQMSdedvddDDDDDDDGDEEDGDDEEfyDEEEHNQHLESHS--TDMAADE-----PEAEK 733
                 111222222221122222211100000011111111111111111111212212211111..1222222.....11111 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.7   0.00096       3.4     111     190 ..     666     745 ..     626     751 .. 0.69
   2 ?   -3.4   0.0       1.2   4.3e+03     138     168 ..    1105    1135 ..    1036    1148 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00096
         Zip 111 pkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkeklaslkvraiill 190
                 ++ a+ ++ e++ ++++s++ v+++ ++ d++ e+d+d+++   + + +q+ +++++  a++e + ek+ ++kv a++ +
  CCE30278.1 666 QEAAEVEHHEPSGSDQMSDEDVDDDDDDDDDGDEEDGDDEEFYDEEEHNQHLESHSTDMAADEPEAEKAGARKVSAMTTV 745
                 22222233345556667888888888888888888888888777777777777777777777788888888888887766 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.2
         Zip  138 kedhvaeadtdadskeelrngkqekseseke 168 
                   e ++++ + +++++ee+ +++q  + +++e
  CCE30278.1 1105 EEPNGRKRGVEHRTVEEKLREEQMDEREIQE 1135
                  2334555556666666666666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       992  (0.0553294); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.44
# Mc/sec: 7869.33
//
Query:       CCE30279.1  [L=282]
Description: uncharacterized protein CPUR_04127 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-12   46.2   0.3      7e-10   39.2   0.3    2.1  1  APH             Phosphotransferase enzyme family
    0.00023   20.8   0.0    0.00038   20.1   0.0    1.4  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
       0.07   13.9   0.0       0.14   12.9   0.0    1.5  1  RNA_polI_A14    Yeast RNA polymerase I subunit RPA14


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.3   1.2e-13     7e-10      35     204 ..      83     236 ..      74     259 .. 0.75

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1.2e-13
                 HHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCH CS
         APH  35 eeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesa 132
                  ++r+e+a+l+++ak+   pvPe l++ + +++ +l  al+e   g  l++     +   l  a+ ++ a+l +         d+l     +lr l + 
  CCE30279.1  83 DRLRNEAAVLQFVAKHTTiPVPEFLDLWEENGVVYLKTALVEN--GVELRN----VDESLLSTAIMSVTAQLES---------DIL----PQLRRLRRN 162
                 6789999999999999888999999988888888888888888..777777....2223333444444444432.........344....445555555 PP

                 HHCCCGCCTCC.HHHHHHHHHHHHHHHH--S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHH CS
         APH 133 tarllaselld.lleeleeqvlaalaallpg....elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyD 204
                   +++ +el+  +  ++++   a+ ++ +p+     ++ vl+H Dl  +N+lvdp+  +++ ++D+e+ag  p  ++
  CCE30279.1 163 FMGSPNPELPViPPHRFWR---AKEKRVWPSmtkdTDDYVLCHTDLDRQNILVDPNTFKIVSILDWETAGFFPQEWE 236
                 5556899999955556666...566666666666999********************************98776655 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.4e-08   0.00038     141     183 ..     194     237 ..     178     254 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.4e-08
                     HGG-EEEE-S--SGGGEEE.-CTTEEE.E--GTT-EEEEHHHHH CS
  Choline_kinase 141 lespvvfcHnDlqegNillnkeekklv.lIDFEYagynyrgfDl 183
                        + v+cH Dl  +Nil++ ++ k+v + D+E ag+ ++ ++l
      CCE30279.1 194 DTDDYVLCHTDLDRQNILVDPNTFKIVsILDWETAGFFPQEWEL 237
                     445689*************98887765277*****998887776 PP

>> RNA_polI_A14  Yeast RNA polymerase I subunit RPA14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.4e-05      0.14      47      74 ..     138     167 ..     103     170 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.4e-05
  RNA_polI_A14  47 a.tglsvdtelss.vlsQLkRiqRdlrGLP 74 
                   + + +sv+ +l+s +l QL+R+ R++ G P
    CCE30279.1 138 StAIMSVTAQLESdILPQLRRLRRNFMGSP 167
                   2467888888876489**********9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2074.56
//
Query:       CCE30280.1  [L=855]
Description: related to interferon-regulated resistance GTP-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-32  112.3   0.0    8.7e-32  110.5   0.0    2.0  1  Dynamin_N      Dynamin family
    1.9e-12   47.0   0.0      1e-11   44.6   0.0    2.0  1  Dynamin_M      Dynamin central region
     0.0001   22.3   0.0    0.00036   20.6   0.0    2.0  1  MMR_HSR1       50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.023   14.5   0.1       0.26   11.0   0.0    2.3  2  Adenine_glyco  Methyladenine glycosylase
       0.11   13.0   0.0       0.38   11.3   0.0    2.0  1  ABC_tran       ABC transporter
          7    7.1   0.0          7    7.1   0.0    3.2  3  AAA_23         AAA domain


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.0   2.9e-35   8.7e-32       1     167 [.      84     273 ..      84     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 2.9e-35
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C..............CS...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas..............eravkeelkekekkledfsevreeieketekiagankg 85 
                 i+vvG+qS+GKSSvl+a+ g + +pr+++ +Tr  +e++l++++eas              e+++  +++   + + +f+ + +e ++  +  +  +  
  CCE30280.1  84 IVVVGDQSAGKSSVLEAISGTP-FPRDAGACTRFATEIRLRRSKEASlrvsiipdrsrplsEHNALLSYGGSVTSEMSFESMMREATQLIAPRDVPGRF 181
                 89********************.7*********************885555554443333322233333333555555555555555555555555555 PP

                 --SS-EEEEEEETTS-SEEEEE---B-SSSGTTS.........HHHHHHH.STTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N  86 iskkvillkilsllvkgltlvDlPGldsvnkrdq.........elvkeyi.kkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                   ++++++++ +++ + ltlvDlPGl +v++rdq         +l ++y+  +++iilav   n+d  ++  l+ ar+ dpkg+rti+vltk
  CCE30280.1 182 AARDILVVEKSGPDLPLLTLVDLPGLVRVANRDQsdadiqtieALSDHYMkSPRTIILAVIGGNNDYVQAPILKKARHFDPKGSRTIGVLTK 273
                 5555***************************************************************************************9 PP

>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   3.4e-15     1e-11      12     210 ..     299     532 ..     287     551 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 3.4e-15
   Dynamin_M  12 LklGYvgVvnRsqkdInkkksieealkkEkaFFeshpayrkl.adkaGtpyLakkLnqiLvehIrkslPelkkkineklqklekeleelgeskpsdeek 109
                  klG+++  n +  +  k  + e++ +kE++FF +  +   l  +++G+++L  kL+ +L +hI k   +l+++i++ l+++  +l+++g+ k++ ee 
  CCE30280.1 299 FKLGWYVLLNPGPGE--KLFTPEDRARKEAEFFTRGRWH-ALpPQMWGVAALRAKLSVQLQKHIGKHVKSLRRQIQQALETCDGQLKAMGSAKDTVEEM 394
                 566666666666665..566778999**********875.555***********************************************999888899 PP

   Dynamin_M 110 tklllqlitkfkedfkklieGe...............se.vstkelsggar.ireiFne...................tle.kslekidpleelsdeei 171
                 ++ + +l+t+ ++ ++ +++G+               s+    ++l+  ar  +e F++                   +l+ + +   ++ ++++++e+
  CCE30280.1 395 RFEMGELFTASNNLVTPAVNGNyknpfgvkffagqpsSKgTPAHKLRARAReESERFSKlfrqqgrkvnfagstinghHLPaAGVVGDQSKKKFAQREV 493
                 999*******************88887777776665433223555666665555555552222444444444435444444455555666666666*** PP

   Dynamin_M 172 rtairnsrGrelplfvpekaFealvkkqikkleepalkc 210
                 + ++r++rG elpl  +++a  +l++ + +++   a+++
  CCE30280.1 494 EPLLRQIRGNELPLDSNPRAPYILFQDYSRNWPVLAQEY 532
                 **************9999999999999999987777766 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.2e-07   0.00036       1      84 [.      83     243 ..      83     293 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.2e-07
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE.................................................... CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke.................................................... 47 
                 ++++vG   +GKS+++ a++g+     d   +Tr  +e+r++ ++ e                                                    
  CCE30280.1  83 QIVVVGDQSAGKSSVLEAISGT-PFPRDAGACTRFATEIRLRRSK-Easlrvsiipdrsrplsehnallsyggsvtsemsfesmmreatqliaprdvpg 179
                 589******************6.4567888999999999998443.24688888999999999999********************************* PP

                 ...................EEEEECGGCSS.....HHHHHHHHHHHHHHHHC...TSEEEEEEE CS
    MMR_HSR1  48 ...................ielvDtpGlie.....gaseekglgkaflalee...adlillvvd 84 
                                    ++lvD+pGl+      +++ + +  +a+ ++       +il v+ 
  CCE30280.1 180 rfaardilvveksgpdlplLTLVDLPGLVRvanrdQSDADIQTIEALSDHYMkspRTIILAVIG 243
                 ***************************9743332222222233333333222211255666664 PP

>> Adenine_glyco  Methyladenine glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.9e-05      0.26     112     173 ..     423     486 ..     402     490 .. 0.82
   2 ?    0.6   0.1      0.14   4.2e+02      55     114 ..     655     714 ..     640     750 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.9e-05
  Adenine_glyco 112 wsfvdgkpiveelksaeevpattelsealskdLkkrG..fkfvGptivysflqavGlvndhlee 173
                     +f  g+p ++ + +++      e+se++sk ++++G  ++f G+ti   +l a+G+v d  ++
     CCE30280.1 423 VKFFAGQPSSKGTPAHKLRARAREESERFSKLFRQQGrkVNFAGSTINGHHLPAAGVVGDQSKK 486
                    567777777777666666777889***********9944679****************999876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.14
  Adenine_glyco  55 fdgFdlekvakydeekveelladegiirnrl....KieavisnAravlalqeefgsfseylwsf 114
                     + F++ ++ ++ ++ +e++ a+++  r+r+    + + +i+ Ar ++a  +   +    l+sf
     CCE30280.1 655 LRLFNPIEILRMPDSTIESISAENKATRDRRialkQQKKAIEEARNICASLAMRSD----LRSF 714
                    56799999*************99999999852221234455555555443333333....3333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.38      14      73 ..      84     144 ..      15     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                 EEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkp.teGeilldgkdlkeqeleslrkeigvlpqepqlfpe 73 
                 +++vG+  aGKS++l++++g   p ++G  +   ++++ ++ ++++ +++++p  ++  +e
  CCE30280.1  84 IVVVGDQSAGKSSVLEAISGTPFPrDAGACTRFATEIRLRRSKEASLRVSIIPDRSRPLSE 144
                 789*****************99887899998889999998888888888888887655555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0023         7      22      40 ..      84     102 ..      65     139 .. 0.89
   2 ?   -3.7   0.1       4.9   1.5e+04     180     198 ..     358     376 ..     347     378 .. 0.70
   3 ?   -6.5   8.8         6   1.8e+04     164     164 ..     680     680 ..     480     783 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0023
      AAA_23  22 tlItGpNGaGKTTildAik 40 
                  +++G+  aGK+++l+Ai 
  CCE30280.1  84 IVVVGDQSAGKSSVLEAIS 102
                 5899**************7 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.9
      AAA_23 180 ekekeleeleeeleeilke 198
                    k  + l+++++++l+ 
  CCE30280.1 358 HIGKHVKSLRRQIQQALET 376
                 4556788888888888876 PP

  == domain 3  score: -6.5 bits;  conditional E-value: 6
      AAA_23 164 e 164
                  
  CCE30280.1 680 A 680
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1559  (0.0869541); expected 358.6 (0.02)
Passed bias filter:                      782  (0.0436165); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.44
# Mc/sec: 5793.03
//
Query:       CCE30281.1  [L=416]
Description: uncharacterized protein CPUR_04129 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.061   14.0   0.0       0.84   10.4   0.0    2.7  3  DUF2406   Uncharacterised protein (DUF2406)


Domain annotation for each model (and alignments):
>> DUF2406  Uncharacterised protein (DUF2406)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   4.7e-05      0.84      42      56 ..     206     220 ..     204     226 .. 0.91
   2 ?   -1.5   0.0      0.24   4.3e+03      27      46 ..     269     302 ..     242     304 .. 0.56
   3 ?   -1.4   0.0      0.22   3.9e+03      45      61 ..     386     402 ..     383     403 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.7e-05
     DUF2406  42 NPtRsRdERPLdTIR 56 
                 NPt s  E+PLdTI 
  CCE30281.1 206 NPTASAEEKPLDTIH 220
                 **************5 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.24
     DUF2406  27 y...........kDvfGkei...adpDlSNPtRs 46 
                 y           +D  G +i   a+ Dl  P R+
  CCE30281.1 269 YlqlylprnkdeEDDKGVTIiiaATGDLACPVRN 302
                 3333456665557788888777777888888886 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.22
     DUF2406  45 RsRdERPLdTIRsFeaa 61 
                 RsR    +d IR Fe a
  CCE30281.1 386 RSRRPSTMDPIRYFELA 402
                 45544559******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3031.86
//
Query:       CCE30282.1  [L=766]
Description: QA-1F quinic acid utilization activator QA-1F [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-06   27.5   9.1    2.5e-06   27.5   9.1    1.7  2  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   9.1   1.4e-10   2.5e-06       2      39 ..      31      67 ..      30      68 .. 0.94
   2 ?   -4.8   1.2         1   1.8e+04       2       6 ..     220     224 ..     220     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.4e-10
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39
                aCd Cr  + KCd+++P+C+ C+ l   C+ y+  +k+
  CCE30282.1 31 ACDACRAAREKCDGERPQCGACAALDRSCS-YTPATKK 67
                9*****************************.9988887 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 1
                 S-HHH CS
     Zn_clus   2 aCdnC 6  
                 +C++C
  CCE30282.1 220 SCTHC 224
                 79999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 5684.83
//
Query:       CCE30283.1  [L=327]
Description: related to sterol delta 5,6-desaturase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-25   87.8  23.6    2.6e-24   86.1  21.8    2.1  2  FA_hydroxylase  Fatty acid hydroxylase superfamily
  ------ inclusion threshold ------
        3.2    7.8   5.4       0.48   10.4   1.0    1.8  2  DUF2556         Protein of unknown function (DUF2556)


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.044   3.9e+02      61      94 ..      71     103 ..      57     124 .. 0.69
   2 !   86.1  21.8   2.9e-28   2.6e-24       2     133 .]     161     290 ..     160     290 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.044
  FA_hydroxylase  61 llllllgplsalllvlvlaallelliHsglhvsl 94 
                     l +l++++l a  l++++ al +++i+  + +++
      CCE30283.1  71 LSILIVTQLGATSLYFFFSALSYYFIFDRR-LEY 103
                     445666688888888888899888888882.222 PP

  == domain 2  score: 86.1 bits;  conditional E-value: 2.9e-28
  FA_hydroxylase   2 llallledfveYwvHrllHrvkllwrrlHkvHHsseaptalaalrahplealllallllllllllg.plsalllvlvlaallelliHsglhvslg 95 
                     +l+++++d++ Yw+Hr+ H+++ +++++Hk HH+   pt++aal++hpl+  ++ l++ +  ++ + +  ++l+++v+ +++++liH g  ++ +
      CCE30283.1 161 VLYMAFNDITIYWIHRWEHHPS-VYKHIHKPHHKWIVPTPWAALAFHPLDGYVQSLPYHIFPFICPiQRYLYLALFVAVQIWTILIHDGDMFTGH 254
                     799****************965.9*******************************7777666555558888888***************656666 PP

  FA_hydroxylase  96 wllerllatpraHrlHHskneegnfgvllslwDrlfgT 133
                     w+ er++++p++H lHH +++  n+g+++++ D  fg+
      CCE30283.1 255 WV-ERFINSPAHHTLHHIYFT-VNYGQYFTWADNYFGS 290
                     66.899***************.**************95 PP

>> DUF2556  Protein of unknown function (DUF2556)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.0   5.3e-05      0.48       5      27 ..     153     175 ..     149     178 .. 0.93
   2 ?   -2.8   0.2      0.71   6.3e+03       3      15 ..     227     240 ..     226     257 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.3e-05
     DUF2556   5 YgWLvvFalsillldalimqwie 27 
                 Y WL v a++ ++++ + ++wi 
  CCE30283.1 153 YTWLFVSAVLYMAFNDITIYWIH 175
                 89*******************95 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.71
     DUF2556   3 RkYgWLvvF.alsi 15 
                  +Y +L +F a+ i
  CCE30283.1 227 QRYLYLALFvAVQI 240
                 67778777634443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2346.39
//
Query:       CCE30284.1  [L=113]
Description: uncharacterized protein CPUR_04132 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 886.71
//
Query:       CCE30285.1  [L=112]
Description: uncharacterized protein CPUR_04133 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 812.03
//
Query:       CCE30286.1  [L=101]
Description: uncharacterized protein CPUR_04134 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 758.38
//
Query:       CCE30287.1  [L=115]
Description: uncharacterized protein CPUR_04135 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   13.4   0.0      0.032   13.4   0.0    1.1  1  NadA      Quinolinate synthetase A protein


Domain annotation for each model (and alignments):
>> NadA  Quinolinate synthetase A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.8e-06     0.032     122     178 ..      31      88 ..       8     105 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-06
                 TTTHHHHHHHSS.-SEEEEES-HHHHHHHHHHH.SEEEEESSSS-GCGGG--CHHHHH CS
        NadA 122 Ssnavkvvealk.ekkilflPDqnLgryvakklgekkiilwkgaCsvHeefkaeevee 178
                 S+  ++ +ea + +  +lf   +nL++yv  k ++++   + g+C++H + ka +++ 
  CCE30287.1  31 SADSSDRLEARDdGCCVLFQNQNNLAHYVVPKANDATTYPFVGYCQIHINRKAGSCNG 88 
                 45555555555336679*******************************9887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 872.41
//
Query:       CCE30288.1  [L=161]
Description: uncharacterized protein CPUR_04136 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1192.55
//
Query:       CCE30289.1  [L=122]
Description: uncharacterized protein CPUR_04137 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 904.35
//
Query:       CCE30290.1  [L=551]
Description: uncharacterized protein CPUR_04138 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-05   24.9   0.3    4.7e-05   23.2   0.3    2.0  1  F-box       F-box domain
    3.2e-05   23.7   1.5    0.00013   21.7   1.2    2.3  2  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.3   5.2e-09   4.7e-05       2      36 ..      50      84 ..      49      86 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5.2e-09
                HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHH CS
       F-box  2 tlsrLPsevlrhILerLplsdllalrrVSkgwril 36
                t+ +LP e+l  I  +L+l dl+++r+VS+ w+  
  CCE30290.1 50 TICDLPAEILSVIALQLGLEDLIRCRLVSRLWHAT 84
                799*****************************965 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   1.2   1.5e-08   0.00013       1      33 [.      51      83 ..      51      86 .. 0.95
   2 ?   -2.0   0.0      0.39   3.5e+03      28      37 ..     239     248 ..     239     251 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.5e-08
  F-box-like  1 isrLPdEiLlqIFsyLppsdLlrlalVCrrWrr 33
                i++LP EiL+ I  +L ++dL+r++lV+r W+ 
  CCE30290.1 51 ICDLPAEILSVIALQLGLEDLIRCRLVSRLWHA 83
                689****************************95 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.39
  F-box-like  28 CrrWrrvald 37 
                 +++W+r++l 
  CCE30290.1 239 SKDWKRITLA 248
                 7999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3944.51
//
Query:       CCE30291.1  [L=318]
Description: probable cutinase 1 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-47  161.5   0.1    2.7e-47  161.0   0.1    1.2  1  Cutinase         Cutinase
     0.0069   16.0   0.0     0.0093   15.5   0.0    1.1  1  DUF2974          Protein of unknown function (DUF2974)
  ------ inclusion threshold ------
      0.024   14.5   0.0      0.037   13.9   0.0    1.2  1  VirJ             Bacterial virulence protein (VirJ)
      0.098   12.1   0.1       0.24   10.9   0.1    1.6  1  Glyco_transf_21  Glycosyl transferase family 21
       0.25   11.3   0.5       0.51   10.3   0.5    1.5  1  Serglycin        Serglycin


Domain annotation for each model (and alignments):
>> Cutinase  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.0   0.1   7.4e-51   2.7e-47       2     177 ..      55     231 ..      54     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 161.0 bits;  conditional E-value: 7.4e-51
                 --SEEEEEE--TT--TTT.SSHHHHHHHHHHHH.TTT-EEEEE--..----CGG..STTSS-HHHHHHHHHHHHHHHHH-TT-EEEEEEETHHHHHHHH CS
    Cutinase   2 ckdvevifArgttepggl.gsvGeavvsalesavgsksvavqgvn..YpAdleq..lyegseeagakeaaalvqslaskCPdtkivlgGYSqGaqvidn 95 
                 c+++++ifArg+te+g++  svG+ v+++l++++g+ +v++qgv+  Y+A   +  +++gs+ a+++e+ +l++ +++kCP + i +gGYSqGa+++++
  CCE30291.1  55 CPKAIFIFARGSTEQGNMgASVGPTVANTLTNQLGKGQVWIQGVGgpYTAGIPEnaMPAGSSPAAIAEMDRLFTLAHTKCPTSSILAGGYSQGAALAAA 153
                 ******************889*****************************9998889****************************************** PP

                 HHTT.....S-HHHHHHEEEEEEES-TTCCCCTTS-TTS-GGGEEEE--TT-GGG.TS----GGGG-GGGG.HHHHHHHHHHH CS
    Cutinase  96 aieggatatlpaavadkvaavvlfGdpsnvaglpevsklyaskikslCdagDpiC.gsgneleaHlsYvseyttqaakFvvsk 177
                 a+++      +++++++++a+vlfG+++n ++ +++ +++a+++k++C++gD++C gs++ ++aHl+Y+ +++ +a++F+ sk
  CCE30291.1 154 AVSN-----ASPEIRNQIVATVLFGYTKNLQNGGKIPNYPADRVKVFCNPGDMVCtGSLMITPAHLNYIPQAGGAAPQFLESK 231
                 ****.....9*********************************************888888999***************9987 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.6e-06    0.0093      85     119 ..     138     172 ..     123     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.6e-06
     DUF2974  85 kiylgGhSkGGnlAvyaamnaeddlqeriskiysf 119
                 +i+ gG+S+G+ lA+ a+ na+++++++i + + f
  CCE30291.1 138 SILAGGYSQGAALAAAAVSNASPEIRNQIVATVLF 172
                 5889*************************887765 PP

>> VirJ  Bacterial virulence protein (VirJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     1e-05     0.037      49     108 ..     119     177 ..     113     187 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
        VirJ  49 evaaDldrlikkyakrwkkkkvvliGysfGaDvlPaaynkLkaatrdkvklvsllalskk 108
                 ++ a++drl + ++++  + +++  Gys+Ga +  aa+ + +++ r+++ +++l++ +k+
  CCE30291.1 119 AI-AEMDRLFTLAHTKCPTSSILAGGYSQGAALAAAAVSNASPEIRNQIVATVLFGYTKN 177
                 44.4799***********************************************998876 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   6.6e-05      0.24      83     118 ..      14      53 ..       3      56 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.6e-05
  Glyco_transf_21  83 fl.ntlagvlqa...klsglgfavGksmalrreaLeaiGG 118
                         +++++v++     l++ +f++G+ m ++r++Le+ +G
       CCE30291.1  14 AAaAPVPNVIAGdvnGLEARQFGMGMGMGMTRNDLESGSG 53 
                      33367777777755457899****************9887 PP

>> Serglycin  Serglycin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5   0.00014      0.51      80     107 ..     270     297 ..     259     305 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
   Serglycin  80 nlndvfplsedysgsgsGsGsGsGsgsg 107
                 ++n + p +    gsg GsG GsG gsg
  CCE30291.1 270 EMNTFTPQVPAAGGSGLGSGLGSGFGSG 297
                 5677778888887777777666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2276.87
//
Query:       CCE30292.1  [L=35]
Description: uncharacterized protein CPUR_04140 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        92  (0.00513135); expected 358.6 (0.02)
Passed bias filter:                       88  (0.00490825); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.26s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 262.95
//
Query:       CCE30293.1  [L=469]
Description: related to integral membrane protein PTH11 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-07   31.7   8.6    2.1e-07   30.9   8.6    1.4  1  CFEM             CFEM domain
  ------ inclusion threshold ------
        1.8    8.2  15.1       0.81    9.4   4.0    2.9  3  Cation_ATPase_C  Cation transporting ATPase, C-terminus


Domain annotation for each model (and alignments):
>> CFEM  CFEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   8.6   2.3e-11   2.1e-07       2      65 ..      16      73 ..      15      74 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.3e-11
                TTTS-GGGTCGGG---TTSS.S-TT-HHHHHH-HHHHHHHHHHHHHH--THHHHHHHHHHHHHH CS
        CFEM  2 lsalPkCaqdClaeavkkssgCakddtaCiCtnaklqseitdCvtaaCtaeealaavnaasslC 65
                +s+lP+Ca +C+ +       C+ ++  CiC  +++ s++t C+ ++C+  +a   +n++s +C
  CCE30293.1 16 ISQLPACALSCISS-----R-CDVNNATCICAHNSYRSDMTGCMFQSCGLPDAMFSRNWTSIIC 73
                789*********98.....4.********************************9999***9999 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.7    0.0033        29     128     173 ..      87     131 ..      62     141 .. 0.77
   2 ?   -1.7   3.7      0.22     2e+03      93     142 ..     170     215 ..     124     241 .. 0.63
   3 ?    9.4   4.0     9e-05      0.81      69     148 ..     261     340 ..     199     349 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0033
  Cation_ATPase_C 128 lllaillslllqvlivyvpglnav.fgtaplsleewlialllalvvl 173
                        + + ++++l+v+i +v  ++++  +t++ + e+w+i+++ ++ v+
       CCE30293.1  87 TNYLLGGIVILTVIIRLV--FKRFySSTRRFGSEDWTIMVATVITVV 131
                      446667788888999999..777747999*******88877766554 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.22
  Cation_ATPase_C  93 maFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvli 142
                      ++F+ + l+ i+  l        +f+ +g+++  ++ +++ ++++l++++
       CCE30293.1 170 LYFTLITLVKICLSLFYLN----IFPGRGIRKLLWITVGFHVAFGLTFIL 215
                      4444444444444444444....777777777777777777777766654 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 9e-05
  Cation_ATPase_C  69 ffltlllfgisekenklssnyaqtmaFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpgl 148
                      ++++l l + +  + +++++++ +++F+t  ++ i+ +l l+s ++ +++++ ++ n+ +++  ++++ + ++ +  p l
       CCE30293.1 261 WLIALPLTQLQKLRLHWKKKVGAAVMFMTGGIVTIISILRLKSFSHFANSYNPTWDNWNIVFWSTIEVCIGLICCCLPTL 340
                      222333445666666677999************************************99999999988888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3341.48
//
Query:       CCE30294.1  [L=295]
Description: uncharacterized protein CPUR_04142 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-23   81.7   1.4    7.5e-15   55.2   0.6    2.3  2  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
     0.0013   18.3   0.4     0.0022   17.6   0.4    1.5  1  DUF1295     Protein of unknown function (DUF1295)
  ------ inclusion threshold ------
       0.11   12.4   0.4       0.26   11.1   0.4    1.6  1  CHD5        CHD5-like protein


Domain annotation for each model (and alignments):
>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.6e-09   1.6e-05       3      70 ..     117     188 ..     115     199 .. 0.85
   2 !   55.2   0.6   1.2e-18   7.5e-15      69     149 ..     211     294 ..     206     295 .] 0.91

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.6e-09
  Steroid_dh   3 mpllivakavlfcvlnGllqarylsyyqpy.aedylkkd...rlllgivlfvlgmliniksdiiLrelrkeg 70 
                 + +l +++a+ f vlnG+  + +l+ y p  ae+++ +    +++lg+++f +g+  n+  d  Lre+r+ +
  CCE30294.1 117 IHILVALMALSFQVLNGISIGAWLAAYGPVtAEEWALQSsfgQFVLGVAIFYMGLAANFFHDGELREIRRTE 188
                 56778899999****************999899999876333689*********************998765 PP

  == domain 2  score: 55.2 bits;  conditional E-value: 1.2e-18
  Steroid_dh  69 egetkykiprgglFelvsapnyfgEilewigyalvt..kslaalaFalftvlnltvraaahhkwykkkf.ekYpksRkiliPfv 149
                   ++ y+ip+ glF +v  ++yf E +ew g+ +++    ++a++F +  v+ + +ra++  kwy k+f e+  + R +++P v
  CCE30294.1 211 SVQKHYQIPQTGLFRYVLYAHYFCEWIEWTGFLIAAgwTCVPAWTFLINEVCAMLPRAVKGKKWYMKTFgEDKVRGRWAVLPGV 294
                 56789***************************9987423689***************************9999999***99987 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.4   3.7e-07    0.0022     122     193 ..     161     255 ..     110     269 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.7e-07
     DUF1295 122 viglalwlvgivlealaDqQlsaf........................kkdpankgkvldsGLwrysRHPNYfgealiWwglflialealegleal 193
                 v+g+a++ +g++++ + D  l +                         k + + + ++ ++GL+ry     Yf e++ W g++++a  +  ++ + 
  CCE30294.1 161 VLGVAIFYMGLAANFFHDGELREIrrtemrrqerilgqqpggssgkssKVSVQKHYQIPQTGLFRYVLYAHYFCEWIEWTGFLIAAGWTCVPA-WT 255
                 57888888888888888888888888888888888888888888888788888888899***********************99886665554.33 PP

>> CHD5  CHD5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   4.4e-05      0.26     112     157 ..      96     142 ..      89     143 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.4e-05
        CHD5 112 lvlkfwyrktpvfylpkgwfPllve.wllslplaplgsVSltiWlfa 157
                 +v+ ++yr  +   +++++ P  +   l++l + +l+++S+++Wl+a
  CCE30294.1  96 FVIHYTYRALIFPLIQPSMSPIHILvALMALSFQVLNGISIGAWLAA 142
                 444445554444455999***987636677**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2160.46
//
Query:       CCE30295.1  [L=895]
Description: uncharacterized protein CPUR_04143 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-24   85.7   0.0    3.9e-24   84.9   0.0    1.4  1  MINDY_DUB  MINDY deubiquitinase


Domain annotation for each model (and alignments):
>> MINDY_DUB  MINDY deubiquitinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.0   2.2e-28   3.9e-24       1     116 [.     379     530 ..     379     531 .. 0.93

  Alignments for each domain:
  == domain 1  score: 84.9 bits;  conditional E-value: 2.2e-28
   MINDY_DUB   1 vNvLlLsgk........iellpedreevsleeLlelladilldnnplnqeen...lsellelLpklqtgldvnprF....................... 65 
                 vN+L ++++        +e+l + re++sl+ Ll++++d+l++ ++++ +++   +s+l+++L++l++g++vnprF                       
  CCE30295.1 379 VNALTMTTPsdipettlVEIL-RPREQISLDLLLRAVFDELMSPRRTSPDKTlpdVSDLYAFLQSLHNGMNVNPRFvptpemvnaykrtslthlhpter 476
                 699999999999999999998.999*********************8888778889******************************************9 PP

   MINDY_DUB  66 ....dgidsFektselalFdllnipLvHGwlvdp.qdaeaaealsaksYneavell 116
                     +g  +Fe+t e++l+ +++ipL+HGwl+ + +  + + +++a sY++a++ll
  CCE30295.1 477 gsliPG--TFENTTEMSLYATFSIPLIHGWLPAQsDPVYDVLERQAASYEDAQNLL 530
                 998888..************************996677788888*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (895 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 5980.51
//
Query:       CCE30296.1  [L=108]
Description: uncharacterized protein CPUR_04144 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 787.58
//
Query:       CCE30297.1  [L=476]
Description: related to aldehyde dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-138  461.8   1.9   2.5e-138  461.5   1.9    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  461.5   1.9  1.4e-142  2.5e-138       7     462 .]      20     472 ..      15     472 .. 0.97

  Alignments for each domain:
  == domain 1  score: 461.5 bits;  conditional E-value: 1.4e-142
                 SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   7 etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelae 105
                 ++++  +Patg+v+ k + a+ +d+ +av+aA+ea  +w++++++eR++iL kaad++ +r++ela++++ etG     a+ ++++ai +lr +a+ ++
  CCE30297.1  20 KSFDIKSPATGKVLHKSAGASVDDATKAVDAAAEALTSWRRTTPQERQDILLKAADIMSRRRDELATCMVDETGCASDWADLNLNSAIAMLRDVAGRVS 118
                 45999********************************************************************************************** PP

                 HHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE-...-SSTCCHHHHH CS
      Aldedh 106 klegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvv...tgsgsevgeal 200
                 +l+g+  ++ ++++ a+v reP+Gvv++I++WN P +l ++++a  +aaGNtvv+K +e  p + + l+ ++++aglP+gv+n++   + + + v + l
  CCE30297.1 119 TLAGSFPAMaNPNRSAIVLREPYGVVLSIAAWNAPYILGSRAVAFPIAAGNTVVFKASESCPRTFWTLVDVLRDAGLPNGVVNLLvhePSDAAAVTSSL 217
                 ****9988877**************************************************************************776677889999** PP

                 HH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS CS
      Aldedh 201 vehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvg 299
                 +++p+v+k++ftGst+vgr ia++aa++lk+v+lElGGk+p+iv+eda+ld a+++++ g+f++ GQ+C++++++lv++ + d f++kl++a++++   
  CCE30297.1 218 ITDPRVKKINFTGSTAVGRIIATQAAEHLKPVVLELGGKAPAIVWEDANLDLAAQQCALGSFIHGGQICMCTEKILVHKAVKDTFRQKLAAAVAAMFP- 315
                 *********************************************************************************************99855. PP

                 -TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESE CS
      Aldedh 300 dpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLa 398
                    d +  v  li++a+++k +++v++a+e+ga++l+G     a++++   ++P v++nvt dm+i+++E FGP +sv+ +++eeeai+iaNdteyGL+
  CCE30297.1 316 --SDGEAIV--LINSAAAHKNRQLVADATERGATILHGD--VAAHESSTTRMRPIVVDNVTADMDIYKTESFGPTVSVLDIESEEEAIRIANDTEYGLT 408
                 ..5556777..9*************************99..67889999************************************************** PP

                 EEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 399 agvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 a+vft+dl+r +r+ae++eaG v+iN++t+++++alp+gG k Sg+Gr++ + glee+t++k+v
  CCE30297.1 409 AAVFTQDLRRGLRLAEAIEAGAVHINSMTVHDENALPHGGAKSSGYGRFNASLGLEEWTRTKNV 472
                 **************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3552.14
//
Query:       CCE30298.1  [L=295]
Description: uncharacterized protein CPUR_04146 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.051   11.8  11.2      0.067   11.4  11.2    1.1  1  Nop14            Nop14-like family
       0.15   12.3  10.0       0.32   11.3  10.0    1.6  1  DUF4611          Domain of unknown function (DUF4611)
       0.18   10.0  11.1       0.24    9.7  11.1    1.1  1  CDC45            CDC45-like protein
       0.42   10.0  14.9       0.63    9.4  14.9    1.2  1  CobT             Cobalamin biosynthesis protein CobT
       0.79    9.4   7.7        1.5    8.5   7.7    1.4  1  FAM176           FAM176 family
       0.95    8.4  14.6        1.5    7.8  14.6    1.2  1  Paf1             Paf1
       0.97    8.8  13.7        1.3    8.3  13.7    1.1  1  SDA1             SDA1
        2.8    7.8  14.7          4    7.3  14.7    1.1  1  Sigma70_ner      Sigma-70, non-essential region
        3.4    7.4   9.0        5.4    6.8   9.0    1.2  1  Pox_Ag35         Pox virus Ag35 surface protein
          7    6.2  15.5         11    5.5  15.5    1.3  1  PPP4R2           PPP4R2
        7.5    5.4  18.1        9.9    5.0  18.1    1.1  1  Radial_spoke     Radial spokehead-like protein
        8.6    6.1   6.7         13    5.5   6.7    1.2  1  TFB6             Subunit 11 of the general transcription fact


Domain annotation for each model (and alignments):
>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  11.2   4.5e-05     0.067     364     402 ..     245     278 ..     202     290 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.5e-05
       Nop14 364 seseeeeeeeeedeeeeedeeeee.eeeededdlsdlese 402
                 +e     +eeeedeeeee+eeeee eeeeded+ +d+ +e
  CCE30298.1 245 EE-----DEEEEDEEEEEEEEEEEgEEEEDEDE-EDMIAE 278
                 11.....22222222222222222122222221.121111 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  10.0   0.00021      0.32      49      85 ..     242     281 ..     228     295 .] 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00021
     DUF4611  49 lveqe...aqddvaaagdeeeegededdeeeekniknktk 85 
                 lve+e   ++d+ +++++eeeege+e+de+ee  i + + 
  CCE30298.1 242 LVEEEdeeEEDEEEEEEEEEEEGEEEEDEDEEDMIAEEER 281
                 4555445578888888889999*********999876543 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  11.1   0.00016      0.24     120     171 ..     231     282 ..     217     293 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00016
       CDC45 120 reayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkr 171
                 re y al++   ++eedeeee+e++++eeeeee ee+e+++eed   ++++r
  CCE30298.1 231 RERYLALRDLGLVEEEDEEEEDEEEEEEEEEEEGEEEEDEDEEDMIAEEERR 282
                 6677777777777655544444444433333333333333333333333333 PP

>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  14.9   0.00042      0.63     198     242 ..     237     281 ..     231     291 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00042
        CobT 198 Lqdldlaeesaeepeeedeeeeedeeeeeeeseeeeeegedddke 242
                 L+dl l ee+ ee+e+e+eeeee+eee+eee++e+ee+  ++++ 
  CCE30298.1 237 LRDLGLVEEEDEEEEDEEEEEEEEEEEGEEEEDEDEEDMIAEEER 281
                 678888854444444444444444444444433322222222222 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   7.7   0.00098       1.5      64      92 ..     248     276 ..     223     292 .. 0.48

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00098
      FAM176  64 esekasededeeeeeeeedsseseaeeel 92 
                 e+e+++e+e+eeeeee e+++++++e+ +
  CCE30298.1 248 EEEEDEEEEEEEEEEEGEEEEDEDEEDMI 276
                 11111222222222222222222222222 PP

>> Paf1  Paf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  14.6   0.00098       1.5     362     403 ..     244     281 ..     225     292 .. 0.45

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00098
        Paf1 362 eekeeeeeeeeeeeeekseeeeekeeekeeaeeeseaeseee 403
                 ee++eeee+eeeeee    eeee+ ee+e+++ee+  ++ee 
  CCE30298.1 244 EEEDEEEEDEEEEEE----EEEEEGEEEEDEDEEDMIAEEER 281
                 332222222222222....33333333333333333333332 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  13.7   0.00089       1.3     136     170 ..     246     278 ..     222     290 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00089
        SDA1 136 sedeeeeeeeeeekeekeeeeeeeeeeeeeeeeee 170
                 +++eee+eeeeee+ee+e eeee+  e+ee+  +e
  CCE30298.1 246 EDEEEEDEEEEEEEEEEEGEEEED--EDEEDMIAE 278
                 111221222122222222222222..111111111 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  14.7    0.0027         4      28      65 ..     241     279 ..     224     286 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0027
  Sigma70_ner  28 GflDeeeeeeeeeeeedeeeeeee.edddeeeseseaad 65 
                  G+++ee+eeee+eeee+eeeeee  e++de+e+++ a++
   CCE30298.1 241 GLVEEEDEEEEDEEEEEEEEEEEGeEEEDEDEEDMIAEE 279
                  667744444444443333333333333333334444433 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   9.0    0.0036       5.4      77     107 ..     247     277 ..     220     287 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0036
    Pox_Ag35  77 eeaaeeeeledseedeenendedeseesvqa 107
                 +e++e+ee e++ee+ee e++ede ee + a
  CCE30298.1 247 DEEEEDEEEEEEEEEEEGEEEEDEDEEDMIA 277
                 1111112122222222222222222222222 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  15.5    0.0072        11     249     286 ..     244     280 ..     209     283 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0072
      PPP4R2 249 eekdddeeddeedtdyveeeeddesedddeeeeeeeee 286
                 ee +d+ee+dee+++ +eeee++e+ed+dee+  +eee
  CCE30298.1 244 EE-EDEEEEDEEEEEEEEEEEGEEEEDEDEEDMIAEEE 280
                 44.44555555555556667777777777776666666 PP

>> Radial_spoke  Radial spokehead-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  18.1    0.0066       9.9     356     408 ..     244     294 ..     232     295 .] 0.70

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0066
  Radial_spoke 356 npekeeeeeeeeeeeeeeeeeeeeepEtgpplltplseDasiddvppWtvrls 408
                   ++e eeee+eeeeeeeeeee eeee E + ++++  +e+ +     pW +r s
    CCE30298.1 244 EEEDEEEEDEEEEEEEEEEEGEEEEDEDEEDMIA--EEERRQTGRGPWNARPS 294
                   4445666666666666677777777787777765..45567788889998876 PP

>> TFB6  Subunit 11 of the general transcription factor TFIIH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.7    0.0086        13     119     150 ..     246     274 ..     221     286 .. 0.45

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0086
        TFB6 119 eeeeeedeeededeeeeeeeeeeeeeeedeed 150
                 e+eeeedeee+e+  eeeee e eee+edeed
  CCE30298.1 246 EDEEEEDEEEEEE--EEEEEGE-EEEDEDEED 274
                 1111111111111..1111111.111112122 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1735  (0.0967706); expected 358.6 (0.02)
Passed bias filter:                      893  (0.0498076); expected 358.6 (0.02)
Passed Vit filter:                       248  (0.0138323); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 1986.43
//
Query:       CCE30299.1  [L=146]
Description: probable histone H2A F/Z family member HTZ1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-19   68.1   0.1      2e-18   67.0   0.0    1.5  2  Histone        Core histone H2A/H2B/H3/H4
    3.8e-13   48.9   0.2    3.8e-13   48.9   0.2    1.9  2  Histone_H2A_C  C-terminus of histone H2A
    4.5e-06   26.8   0.5    6.1e-06   26.4   0.0    1.5  2  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   3.3e-22     2e-18      45     131 .]      17     103 ..       5     103 .. 0.95
   2 ?   -2.1   0.1      0.75   4.5e+03      47      52 ..     133     138 ..     124     144 .. 0.47

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 3.3e-22
                 HHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone  45 tvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArrlr 131
                 +   +  +k+q+++++ + ++p  Rv r +++++++++r+ a+a ++++++lE+l++e++e+A++++k+ K ++itp+++qlA+r++
  CCE30299.1  17 KTSAEGPKKQQSHSARAGLQFPCGRVKRLLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNATKDLKVKRITPRHLQLAIRGD 103
                 55667889*****************************************************************************75 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.75
                 HHHHHH CS
     Histone  47 alkeir 52 
                 ++k+++
  CCE30299.1 133 KKKKKK 138
                 111111 PP

>> Histone_H2A_C  C-terminus of histone H2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       1.3     8e+03      25      33 ..      45      53 ..      43      53 .. 0.70
   2 !   48.9   0.2   6.3e-17   3.8e-13       1      34 [.     104     139 ..     104     141 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.3
  Histone_H2A_C 25 LLpkktkkk 33
                   LL+++t++k
     CCE30299.1 45 LLKQNTQNK 53
                   888888765 PP

  == domain 2  score: 48.9 bits;  conditional E-value: 6.3e-17
  Histone_H2A_C   1 EELnkLLggVTIAqGGVLPnIhkvLL...pkktkkkk 34 
                    EEL++L++ +TIA GGVLP+I+ +LL    kk+kkkk
     CCE30299.1 104 EELDTLIR-ATIAFGGVLPHINRALLdstEKKKKKKK 139
                    9*******.*****************88855555554 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0     1e-09   6.1e-06       2      65 .]      36     100 ..      35     100 .. 0.96
   2 ?   -3.3   0.2       1.9   1.2e+04      49      54 ..     132     137 ..     125     144 .. 0.58

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1e-09
                    XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                    ++P  rvk+++k+  ++  ++   A ++++ ++e    e+++ A   +k+ k K i++ h++lA+
     CCE30299.1  36 QFPCGRVKRLLKQNtQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNATKDLKVKRITPRHLQLAI 100
                    69************888888*******************************************97 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.9
                    CCTTSS CS
  CBFD_NFYB_HMF  49 kkekrK 54 
                    +k+k+K
     CCE30299.1 132 EKKKKK 137
                    333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1057.31
//
Query:       CCE30300.1  [L=613]
Description: uncharacterized protein CPUR_04148 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-11   43.3   0.3    4.9e-11   42.4   0.3    1.5  1  R3H        R3H domain
    3.3e-05   23.6   0.0    7.1e-05   22.6   0.0    1.6  1  RRM_1      RNA recognition motif. (a.k.a. RRM, RBD, or RNP do
  ------ inclusion threshold ------
       0.26   11.4   1.4        5.6    7.2   0.1    2.6  2  NR_Repeat  Nuclear receptor repeat


Domain annotation for each model (and alignments):
>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.3   8.3e-15   4.9e-11       3      60 .]     321     380 ..     319     380 .. 0.92

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 8.3e-15
                 HHHHHHHHHHHHH-S.--EEE---.--SHHHHHHHHHHHHSSEEEEEE--SS-SEEEEEE CS
         R3H   3 llrvekklaefvkdt.grslefpp.mssyeRriiHelaeaygleseSvGeepkRrvvvtk 60 
                 +l+++ +l+ f +d+ ++ l+f p  s+++Rr iH la+++gle++S Ge + R+++v k
  CCE30300.1 321 CLEFYTELVMFKRDEsREILVFSPgISPEHRRSIHILAHHMGLEHQSMGEADSRQLTVLK 380
                 888999999999996479******99******************************9965 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.2e-08   7.1e-05       1      70 []     182     252 ..     182     252 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.2e-08
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 ++++n+p+ v +e+L  ++ + +  +     +    g  +g af +F+s ed +  +ea+ng+ ++gr+l+
  CCE30300.1 182 IVIKNIPFAVRKETLASIMLEMNLPQPYAFNYHfDSGVFRGLAFANFQSAEDTRVVIEAMNGMDVHGRKLR 252
                 78999999999999999999988887777777778*********************************986 PP

>> NR_Repeat  Nuclear receptor repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.028   1.6e+02       5      24 ..     382     401 ..     381     409 .. 0.86
   2 ?    7.2   0.1   0.00094       5.6      21      44 ..     556     576 ..     543     578 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.028
   NR_Repeat   5 dhprqgSIlynlltSAkqth 24 
                 +hp + S ++n++ ++   h
  CCE30300.1 382 QHPSPTSNIHNMPGNTLDAH 401
                 7************9876655 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00094
   NR_Repeat  21 kqthaApeaPearpgapwWgcscG 44 
                 + ++a    Pe +p++p W++  G
  CCE30300.1 556 NNKQA---VPERQPRGPEWETTTG 576
                 66788...9**********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 4031.38
//
Query:       CCE30301.1  [L=390]
Description: related to NADPH quinone oxidoreductase homolog PIG3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-22   77.6   0.0    1.3e-21   76.9   0.0    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
      4e-19   70.0   0.0    8.3e-19   69.0   0.0    1.6  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    6.7e-06   25.9   0.0    1.5e-05   24.8   0.0    1.7  1  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.045   13.6   0.0        0.8    9.6   0.0    2.3  1  ADH_N_2       N-terminal domain of oxidoreductase
      0.072   13.5   0.0       0.16   12.4   0.0    1.5  2  HAD           haloacid dehalogenase-like hydrolase
       0.11   12.8   0.4        0.2   11.9   0.4    1.4  1  Ly-6_related  Caenorhabditis elegans ly-6-related protein


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   4.5e-25   1.3e-21       2     128 ..     216     350 ..     216     352 .. 0.91

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 4.5e-25
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC....TSSE CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakk.lGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg....gkge 94 
                 v la++q+A+a+G ++i ++ss++ l+ a + lGad++in+k+  +++e + ++tgg g+d++fe+   ++tl+ ++++++ gG++ ++Gg    +   
  CCE30301.1 216 VSLAGLQAAHAAGYKTIIISSSDDTLQRATQhLGADHAINSKTYwEWQEPVMKATGGLGADIIFETGR-PRTLRKSFESVAFGGTINCMGGvsgtM--A 311
                 56899**************************9*********************************877.**********************87532..3 PP

                 EE.....EEHHHHH.HTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  95 ee.....fdlrnll.lkeksilGsllgslreefkealdll 128
                  e     +d++ l+ ++ ++++G+++g+ +++f+e+l + 
  CCE30301.1 312 GEpelhrLDISELVlRRCVTMRGVIGGG-KDRFEEMLGFY 350
                 335799******776999**********.9*****99875 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   2.8e-22   8.3e-19       1     133 []     248     386 ..     248     386 .. 0.77

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 2.8e-22
                   TT-SEEEETT.STTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.....S-EEE-CHHHCTTT-EEEE--GGG....-... CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp....lsaallkpakkrkgrsvkyeflfs.mkas... 84 
                   lGAd++i+++   +++    +atgg g D++++t g + +l++s++ ++ gG++ ++gg +           +++   +  ++   l   ++++   
    CCE30301.1 248 LGADHAINSKtYWEWQepvmKATGGLGADIIFET-GRPRTLRKSFESVAFGGTINCMGGVSgtmaG------EPE-LHRLDISELVLRRcVTMRgvi 336
                   8******8885555559999*************9.777777*******887***999984333221......222.222222222222222222556 PP

                   ..-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  85 .aqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                     ++d++ee++ ++ee+++rpvvd+vf+++ a++A+ryl +g+ +GK+V+
    CCE30301.1 337 gGGKDRFEEMLGFYEEKQIRPVVDKVFGFDGAVDAMRYLGEGKRFGKVVV 386
                   669**********************************************8 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   5.1e-09   1.5e-05       2     103 ..      52     157 ..      51     163 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 5.1e-09
                 TEEEEEEEEEEE-HHHHHHHTTS............TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETT CS
       ADH_N   2 gevlikvkaagiCgsDlhilkgg............kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllg 88 
                 gevl+k++a+g++  D+++ +g+            ++ ++k p+++  +++G+v + ++++  l  G+rV+  +l+s  +         +  +  + lg
  CCE30301.1  52 GEVLVKIHAVGLNMRDVQVCNGQytyplqdqqqqqHQKQQKVPIVPCSDMCGTVIQSNSNL--LPPGTRVASIFLQSHLQG------PLQQDHLSSALG 142
                 89*******************************9999999****************99877..9******99887765443......334444446666 PP

                 TSS-SSSBSEEEECG CS
       ADH_N  89 vsldGgfaeyvvvpe 103
                 + l+G ++ey v+p+
  CCE30301.1 143 LPLPGVLTEYRVFPA 157
                 666666666666665 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00027       0.8      21      60 ..      42      79 ..      25     129 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00027
     ADH_N_2 21 eeeelpelkdGevlvralylSvDPymRgrmndaksyvepv 60
                e++++p +++Gevlv+++ +++   mR     + +y  p+
  CCE30301.1 42 EQVPVPVPGEGEVLVKIHAVGLN--MRDVQVCNGQYTYPL 79
                357999***********998887..665554444444444 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.3e-05      0.16      94     160 ..     221     289 ..     217     299 .. 0.73
   2 ?   -3.7   0.0       4.6   1.4e+04     115     144 ..     355     380 ..     341     386 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.3e-05
         HAD  94 laahraaGdrvvvvSgglrplvepllaelgadevlat.elevdd....rltgelglegkpvrgegkvaalre 160
                 l+a++aaG++++++S++ + l +++  +lgad+ +++  + + +    + tg+  l  +++++ g+++ lr+
  CCE30301.1 221 LQAAHAAGYKTIIISSSDDTLQRATQ-HLGADHAINSkTYWEWQepvmKATGG--LGADIIFETGRPRTLRK 289
                 78899**********99888777777.**********4333333665555555..66666666666666666 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.6
         HAD 115 vepll.aelgadevlatelevddrltgelgl 144
                 ++p+  + +g+d  ++       r+ ge++ 
  CCE30301.1 355 IRPVVdKVFGFDGAVDAM-----RYLGEGKR 380
                 344443344433333332.....55555444 PP

>> Ly-6_related  Caenorhabditis elegans ly-6-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   6.7e-05       0.2      16      51 ..      74     108 ..      65     113 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.7e-05
  Ly-6_related  16 iykePknFtdrCdeeeaeskielvaCssiCvtlved 51 
                    y+ P   +++ +++++++k+++v+Cs++C t++++
    CCE30301.1  74 QYTYPL-QDQQQQQHQKQQKVPIVPCSDMCGTVIQS 108
                   577787.46667788889**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2800.64
//
Query:       CCE30302.1  [L=411]
Description: uncharacterized protein CPUR_04150 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-16   61.5   0.2    1.5e-16   61.0   0.2    1.2  1  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.05   13.2   0.0      0.096   12.3   0.0    1.5  1  Choline_kinase  Choline/ethanolamine kinase
      0.069   13.5   0.0       0.19   12.1   0.0    1.7  1  Phage_TAC_4     Phage tail assembly chaperone


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.2   2.6e-20   1.5e-16      33     202 ..     103     305 ..      70     342 .. 0.75

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 2.6e-20
                 -HHHHHHHHHHHHHHH.HTT-B--B-CTTB.S-EEETTEEEEEEE----EE-SS....HHHHHHHHHHHHHHHHHHCCHHCH................. CS
         APH  33 aaeeirrevallrlLa.kagvpvPevlagd.tddeeigllfalieyvpgrsllr....klsaaqlpellealgeflaalhqv................. 108
                  + ++ +e a ++ L  ++ +pvPev+a+d    +e g++++l+e + g++l+     +  aa +++++ +++++l +l ++                 
  CCE30302.1 103 HEISMLSEIATMKTLKsRTTIPVPEVFAFDvSPSNEFGFPYVLLECLKGKTLEStmakTVPAAYKQHVASQVADVLYQLENLtfdrlgriwcgencdep 201
                 445667888899888856667*********99*************************98889***************9999977777777777776666 PP

                 ............-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TTEEEEE--- CS
         APH 109 ...........dpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallpg...elptvllHgDlhpgNllvdpddgrvtGviDf 193
                            + a+++++  l++  ++ rq+ +++a + +++ ++++++++  + +a +        ++p  l+H Dlh gNll+d d+  +tGviD+
  CCE30302.1 202 priipsrssdgSLATARVQTSLEW-FYDHRQRQNRQALKEHADDPEWRAACWI-LKQATPHIIVEdrlHGPFPLCHLDLHFGNLLFD-DEYNLTGVIDW 297
                 666665555533555555566655.5555666555556666666665555555.4444444444488889*****************.778889***** PP

                 TT-EEEECC CS
         APH 194 edaglgppl 202
                   a ++p l
  CCE30302.1 298 SGAATAP-L 305
                 *999994.4 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.6e-05     0.096     112     171 ..     235     297 ..     155     305 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
                     CHHGGCCHCCCTHHHHHHHHHTHHHHH...HCHGG-EEEE-S--SGGGEEE.-CTTEEEE--G CS
  Choline_kinase 112 kekkkkqlklinledlekeleklekll...eelespvvfcHnDlqegNillnkeekklvlIDF 171
                     +++ k++++  ++      l++   ++   ++l+ p  +cH Dl  gN+l+++e +   +ID+
      CCE30302.1 235 RQALKEHADDPEWRAACWILKQATPHIiveDRLHGPFPLCHLDLHFGNLLFDDEYNLTGVIDW 297
                     444444555555554444444444333223366677999************99999999***9 PP

>> Phage_TAC_4  Phage tail assembly chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.2e-05      0.19      18      60 ..     315     357 ..     307     379 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.2e-05
  Phage_TAC_4  18 vklprldgekakveftfkamdrkelaeleeereqseakeeeka 60 
                  +++pr+++ek +v++ f+a  r+ l+el++  eq++  +++k+
   CCE30302.1 315 ITFPRISDEKNEVILDFRATVRDCLQELVSISEQTRPTKKKKT 357
                  89***************************99999976555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2959.95
//
Query:       CCE30303.1  [L=324]
Description: uncharacterized protein CPUR_04151 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-05   23.8   0.1     0.0055   16.6   0.1    2.3  2  DYW_deaminase  DYW family of nucleic acid deaminases


Domain annotation for each model (and alignments):
>> DYW_deaminase  DYW family of nucleic acid deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0013        23      62      81 ..     181     205 ..     148     213 .. 0.68
   2 !   16.6   0.1   3.1e-07    0.0055      71     118 ..     259     308 ..     246     315 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0013
  DYW_deaminase  62 k.....kplllsHsEKlalaygllk 81 
                    +     + ++ +H EK+ +ay + k
     CCE30303.1 181 FdqgipGRFIACHVEKQLIAYFIYK 205
                    233333559***********98765 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 3.1e-07
  DYW_deaminase  71 EKlalaygllktesg...aqiriiknlrvCeDChsafkliskilkaeivvr 118
                    EK+ l    +  ++    + ++i + + vC+DC  ++k + k l+ +iv r
     CCE30303.1 259 EKQRLTELWESRPQEstnW-VHIFVSNEVCDDCQRFAKHVQKKLGIHIVFR 308
                    7777777777766664434.55666678*******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2494.00
//
Query:       CCE30304.1  [L=861]
Description: uncharacterized protein CPUR_04152 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-09   37.7   0.8    5.5e-09   36.5   0.8    1.7  1  OrsD      Orsellinic acid/F9775 biosynthesis cluster protein 
  ------ inclusion threshold ------
       0.13   12.7   3.2      0.099   13.1   1.0    2.1  2  zf-met    Zinc-finger of C2H2 type


Domain annotation for each model (and alignments):
>> OrsD  Orsellinic acid/F9775 biosynthesis cluster protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.8   6.2e-13   5.5e-09       3     113 ..      12     114 ..      10     115 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 6.2e-13
        OrsD   3 feyneeyrvliCreCkyavlpselerHLrkrhrqlkrektqelletvehemslrqldelareaeavslpsaesepipgLpvyeGyrCrakakCkyltrs 101
                 ++y +++r+liC++  ya++  + +rH ++ h +l++ + ++++++++   +l+ +    r+ + ++ p  + +pi+gL +++G  C     C  lt s
  CCE30304.1  12 LKYHKDLRILICEHHGYALQ--NPHRHVENDHPELSKTELERFKRQLSSLWQLSLWP---RKDQFIHGPLNPRAPIEGLTIHDGWSC---HLCDMLTPS 102
                 6899*********9999986..5679*********9999999999996667777776...6667777788*****************...89******* PP

        OrsD 102 lktlrkHlqkkh 113
                 ++++r H  k+h
  CCE30304.1 103 SQSMRMHYYKSH 114
                 ********9999 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.0   1.1e-05     0.099       1      20 [.      91     110 ..      91     111 .. 0.96
   2 ?   -3.2   0.0       1.5   1.3e+04      18      24 ..     324     330 ..     322     330 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
      zf-met   1 fyCelCnvtfnsesqlksHl 20 
                 + C lC++ + s +++++H+
  CCE30304.1  91 WSCHLCDMLTPSSQSMRMHY 110
                 89*****************9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.5
      zf-met  18 sHlqGKk 24 
                  Hl++ k
  CCE30304.1 324 KHLNSEK 330
                 7999966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 5728.32
//
Query:       CCE30305.1  [L=213]
Description: uncharacterized protein CPUR_04153 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1725.64
//
Query:       CCE30306.1  [L=204]
Description: uncharacterized protein CPUR_04154 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1499.19
//
Query:       CCE30307.1  [L=1689]
Description: uncharacterized protein CPUR_04155 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0038   16.2   0.1      0.097   11.6   0.0    2.7  2  Ge1_WD40   WD40 region of Ge1, enhancer of mRNA-decapping pro
  ------ inclusion threshold ------
      0.035   13.9  10.1      0.018   14.9   7.1    1.9  2  DUF445     Protein of unknown function (DUF445)
       0.13   12.6   0.8       0.71   10.2   0.2    2.6  3  HEPN_Swt1  Swt1-like HEPN
        3.6    7.6   5.8        1.3    9.1   2.2    2.1  2  Xpo1       Exportin 1-like protein


Domain annotation for each model (and alignments):
>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.066     3e+02     173     209 ..     408     445 ..     366     448 .. 0.84
   2 !   11.6   0.0   2.2e-05     0.097     176     289 ..     686     819 ..     667     830 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.066
    Ge1_WD40 173 sveeieegll.kieehsliveaafspdGtalatasedG 209
                 +v++ie+ ++ +i+    i+ ++ sp+Gtal  as  G
  CCE30307.1 408 TVQAIEQQIIrNIRGGKRISVGSRSPEGTALKNASDSG 445
                 455666655525777789****************9988 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.2e-05
    Ge1_WD40 176 eieegllkieehsliveaafspdGtalatasedGevkffqvylede...................eeprCLheWkPhdGksl.ssllfldnhkeesdeq 254
                  ++++ lki+      + +fs d t++    + G vkf+ v    +                   ++p       P + k+  +s+++ld+ +   +  
  CCE30307.1 686 LLKQSSLKINTGKAGKDFTFSQDDTVVVSLDKSGRVKFWDVRELTAahqdsdprfplpahssleiNDPLLTLATTPEGEKTWpTSVFLLDKQRPYQKRG 784
                 467788899988888999**********999*********9765444567889999988888876555555567787777764688888888888999* PP

    Ge1_WD40 255 fWrfaitgadnnselklWscelWtClqtikfapsi 289
                   r++i g ++n+ l+lW   l + +q +++  s 
  CCE30307.1 785 ALRYMIVGMKQNHTLQLWDLALCKPVQELNLPHSK 819
                 *******************9999999999876654 PP

>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   7.1     4e-06     0.018      93     289 ..    1151    1348 ..    1124    1381 .. 0.49
   2 ?   -2.5   0.0      0.75   3.4e+03      59      77 ..    1536    1554 ..    1499    1573 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4e-06
      DUF445   93 lkeiledlddesikellkknlkkkleevipepllgklle.llleeerhkkllddlldriknllkdeevkekikelidelieeesgklvlesivsmfl 188 
                  ++++  d   + ++ +l ++++++l++  +++l+gk+ e ++l++e+ ++   +lld ++++l+++ +k  ++ li++ + +     v++ i+++ +
  CCE30307.1 1151 VSAAALDSAMNTVQTRLTAAVSDTLKSS-LKNLQGKIDEgARLRDENFNQRQVKLLDMVSEVLNENTQK-VLETLIHDQFTKL----VIPAIGNKAT 1241
                  3333444444555555555555555443.3444444432134556666666666666666666655555.4444444444333....4444444444 PP

      DUF445  189 reltsil.ekvksdpdhllreeedkkvreliadllnd....pelaakveklkkkklsdlevqeyeealwealkdlllkdlneeesllreriskllek 280 
                  ++++++l +k+++  +  +++e++  + + +++ l++     ++a++v k+ +++l+++  ++ +++l+   k+l ++++++  ++++++ ++ lek
  CCE30307.1 1242 KAVSDVLqNKLQPHIASTVQKEIQSSLPRALTQSLQSadlvSTVADRVGKSINSTLQQEVATTLTQRLTPTFKNLARQSAQQAVKEVHQQYQDGLEK 1338
                  4433332133444444444444444333333333333000034445555555555555555555555555555555555554336666666666666 PP

      DUF445  281 lgeklaed.p 289 
                  + ++ a d  
  CCE30307.1 1339 MQAQHAADsH 1348
                  6666666533 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.75
      DUF445   59 lakkLkeaevasklaewlk 77  
                  +++++ke+ +++++++w++
  CCE30307.1 1536 MEQAIKEDRLQDAMIQWIQ 1554
                  2233333333333333332 PP

>> HEPN_Swt1  Swt1-like HEPN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         1   4.7e+03       1      37 [.    1203    1239 ..    1203    1246 .. 0.80
   2 ?   10.2   0.2   0.00016      0.71       4      84 ..    1246    1329 ..    1242    1333 .. 0.88
   3 ?   -3.1   0.0       2.2     1e+04       3      31 ..    1638    1666 ..    1637    1671 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1
   HEPN_Swt1    1 kaLdlLeegLrpfverelskaygedwweeveaslekd 37  
                  k Ld+++e L++  +++l++ ++++ +++v +++ ++
  CCE30307.1 1203 KLLDMVSEVLNENTQKVLETLIHDQFTKLVIPAIGNK 1239
                  6799999999999999999999999999998866544 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00016
   HEPN_Swt1    4 dlLeegLrpfverelskaygedwweeveasle.kdeeek..kesekeiskldvqdllrvitenWkevFkkklsraerslaseLr 84  
                  d+L++ L+p ++ +++k++++  ++++++sl+ +d  ++   + +k+i+++  q+  + +t++  ++Fk+  ++++++ ++e++
  CCE30307.1 1246 DVLQNKLQPHIASTVQKEIQSSLPRALTQSLQsADLVSTvaDRVGKSINSTLQQEVATTLTQRLTPTFKNLARQSAQQAVKEVH 1329
                  789*************************98886333333446799*************************99999999999986 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.2
   HEPN_Swt1    3 LdlLeegLrpfverelskayged.wweeve 31  
                  L+lL e Lrp+++    ++y+ d w+++v 
  CCE30307.1 1638 LELLMERLRPLIAG-YDTSYPVDpWLATVD 1666
                  899********998.555555554777766 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.2   0.00029       1.3       4     116 ..    1248    1362 ..    1242    1385 .. 0.75
   2 ?   -2.9   0.1       1.4   6.5e+03      62     115 ..    1538    1593 ..    1530    1602 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00029
                  HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT..HHHHHHHHHHHHHHHHHHHTSHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC. CS
        Xpo1    4 lrnklaealaelflqeypnnWpsffddllsllss.spsglelllriLkvlpeEiadfsrskleqerrndlkdllrsnvqkilelllqileqsqskk. 98  
                  l+nkl+  +a  + +e +++ p ++++ l++    s  +  +   i ++l++E+a++  ++l+   +n  ++  ++ v+++++ +++ le++q ++ 
  CCE30307.1 1248 LQNKLQPHIASTVQKEIQSSLPRALTQSLQSADLvSTVADRVGKSINSTLQQEVATTLTQRLTPTFKNLARQSAQQAVKEVHQQYQDGLEKMQAQHa 1344
                  556666666666666655555555555555555522333333344556899*****999***999999999999999*****************999 PP

                  HHHHHHHHHHHHHHHHTT CS
        Xpo1   99 qsselveavLkclsswvs 116 
                  + s  +++ L c++   +
  CCE30307.1 1345 ADSHKIDQLLTCVTGLTD 1362
                  999999999999987655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
                  TTSCHHH.HHHHHHHHHHH.HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT CS
        Xpo1   62 skleqer.rndlkdllrsn.vqkilelllqileqsqskkqsselveavLkclsswv 115 
                  +  +++r + ++ ++++s  +q+i+e +l++   s+ ++ ++ l+  v+ ++++++
  CCE30307.1 1538 QAIKEDRlQDAMIQWIQSGyAQEIFERCLSLQHPSRFEHLPPILLLVVIATIANFL 1593
                  45556666777788888888999999998887777776677777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1762  (0.0982765); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.53
# Mc/sec: 9672.44
//
Query:       CCE30308.1  [L=185]
Description: uncharacterized protein CPUR_04156 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-15   56.5  10.1      1e-14   54.5   8.9    2.2  2  BC10      Bladder cancer-related protein BC10


Domain annotation for each model (and alignments):
>> BC10  Bladder cancer-related protein BC10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.037   6.7e+02       1       5 [.       1       5 [.       1      33 [. 0.74
   2 !   54.5   8.9   5.8e-19     1e-14       4      64 ..      43      94 ..      41      95 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.037
        BC10 1 MfcLr 5
               MfcLr
  CCE30308.1 1 MFCLR 5
               99*98 PP

  == domain 2  score: 54.5 bits;  conditional E-value: 5.8e-19
        BC10  4 LrflipvlllpvrsnrslvnaselfivlfligftvelkPcvycsiilgllikaicrpnlsd 64
                L +++p+l++p       +nas++fi lf+i++++ ++Pcvycsi+l++l+++  ++n+sd
  CCE30308.1 43 LNSWLPLLFIP-------TNASPAFIFLFFICTYFLNRPCVYCSILLLILFFT--SCNWSD 94
                899********.......***********************************..****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1392.74
//
Query:       CCE30309.1  [L=882]
Description: uncharacterized protein CPUR_04157 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6253.55
//
Query:       CCE30310.1  [L=152]
Description: uncharacterized protein CPUR_04158 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1272.67
//
Query:       CCE30311.1  [L=277]
Description: uncharacterized protein CPUR_04159 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-08   35.3   0.2     0.0018   18.2   0.0    2.2  2  APH             Phosphotransferase enzyme family
    3.6e-07   29.7   0.1    6.1e-07   29.0   0.1    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00012   21.7   0.0       0.31   10.6   0.0    2.2  2  Choline_kinase  Choline/ethanolamine kinase
    0.00072   19.0   0.2      0.001   18.5   0.2    1.1  1  Pkinase         Protein kinase domain
    0.00084   19.0   0.0     0.0013   18.3   0.0    1.3  1  RIO1            RIO1 family
  ------ inclusion threshold ------
      0.049   13.3   0.0       0.13   11.9   0.0    1.6  2  WaaY            Lipopolysaccharide core biosynthesis protein 
       0.14   10.9   0.3       0.19   10.5   0.3    1.1  1  Pkinase_fungal  Fungal protein kinase
       0.19   10.6   0.2       0.26   10.2   0.2    1.1  1  Haspin_kinase   Haspin like kinase domain


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   8.1e-07    0.0018      12     108 ..     123     215 ..     115     218 .. 0.89
   2 !   18.1   0.1   8.8e-07     0.002     157     197 ..     209     244 ..     206     252 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.1e-07
                 EEEEEEETT.-...-EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHH CS
         APH  12 rtylvttpa.g...ryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalh 106
                 r+y  t+p+     ++++++++ +r+  +i+ e a+++ + ++gv  P+ l   t + + +   ++ e+++g+  ++       p+ l+++  +la+lh
  CCE30311.1 123 RVYVATHPRiNgggPVLMKIANWPRELDRIETEIAVYQRICDQGV-GPKFLGHVTEGPDGRVIGFITEWLGGARSAE-------PRDLDDCRKALARLH 213
                 67777777663467*******************************.9*****99*******9***************.......899999999999999 PP

                 CH CS
         APH 107 qv 108
                 q+
  CCE30311.1 214 QL 215
                 97 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 8.8e-07
                 HHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 157 aallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 +a+l+   + ++ HgD++  N+lv+ ++++v ++iDfe ++
  CCE30311.1 209 LARLH---QLGIKHGDINKYNFLVR-EGHEV-ALIDFEVSR 244
                 44555...79999************.77777.*****9776 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   2.7e-10   6.1e-07     128     187 ..     206     260 ..     187     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 2.7e-10
         Kdo 128 grliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradrwrekdLarLk 187
                  ++ a+lh++g++H+d++  n+l+++++    e++liD++ +rl    +   e+++++Lk
  CCE30311.1 206 RKALARLHQLGIKHGDINKYNFLVREGH----EVALIDFEVSRLDC-SHDELEEEMNALK 260
                 56789**********************9....*********99988.5555566677666 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00027      0.61       5      52 ..     138     187 ..     135     218 .. 0.69
   2 !   10.6   0.0   0.00014      0.31     145     175 ..     215     244 ..     199     252 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00027
                     EEEEEE-TTCTTCCHHHHHHHHHHHHHHTTSSS-EEEEETT...EEEEE-- CS
  Choline_kinase   5 vllRiygkkteelidretElvvfallserglgpklygifen...Grieefi 52 
                     vl++i +    el   etE+ v++++ ++g+gpk++g  ++   Gr+  fi
      CCE30311.1 138 VLMKIANWP-RELDRIETEIAVYQRICDQGVGPKFLGHVTEgpdGRVIGFI 187
                     566665555.788999********************987541116666665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00014
                     EEEE-S--SGGGEEE.-CTTEEEE--GTT-E CS
  Choline_kinase 145 vvfcHnDlqegNillnkeekklvlIDFEYag 175
                     +   H D+ + N+l+  e +++ lIDFE + 
      CCE30311.1 215 LGIKHGDINKYNFLV-REGHEVALIDFEVSR 244
                     5667***********.9***********886 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   4.6e-07     0.001     109     148 ..     207     246 ..     202     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.6e-07
                 HHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEES CS
     Pkinase 109 egleylHskgiiHrDlKpeNiLidekgelKitDFGlakel 148
                 ++l+ lH+ gi H D+ + N+L+ e  e+ ++DF +++  
  CCE30311.1 207 KALARLHQLGIKHGDINKYNFLVREGHEVALIDFEVSRLD 246
                 799*********************8888*******99875 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   5.9e-07    0.0013     120     150 ..     210     241 ..     195     257 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.9e-07
                 HHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1 120 klykeaglvHaDLSeyNvlvded.kvviIDvs 150
                 + +++ g+ H+D+++yN lv e+ +v +ID+ 
  CCE30311.1 210 ARLHQLGIKHGDINKYNFLVREGhEVALIDFE 241
                 445689999**************9******96 PP

>> WaaY  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.6e-05      0.13     144     182 ..     205     244 ..     198     267 .. 0.80
   2 ?   -1.2   0.0      0.57   1.3e+03     142     169 ..     250     276 ..     241     277 .] 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.6e-05
        WaaY 144 ikqsieklhqlgmvsgdphrgnfivkk.devriidlsgkr 182
                  ++++ +lhqlg+  gd  + nf+v++ +ev +id+   r
  CCE30311.1 205 CRKALARLHQLGIKHGDINKYNFLVREgHEVALIDFEVSR 244
                 578899*******************86269****975444 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.57
        WaaY 142 akikqsieklhqlgmvsgdphrgnfivk 169
                 +++++ +++l++  + s dp  g f+v+
  CCE30311.1 250 DELEEEMNALKD-RLGSTDPRGGSFVVQ 276
                 566777888765.57899********98 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   8.5e-05      0.19     312     359 ..     202     243 ..     200     267 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.5e-05
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDla 359
                     l D+ k++ +L+ + gi H Di  +N l+      ++++  LiD+++ 
      CCE30311.1 202 LDDCRKALARLH-QLGIKHGDINKYNFLVR-----EGHEVALIDFEVS 243
                     67999*******.*****************.....6888899998875 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00011      0.26     226     261 ..     215     250 ..     205     262 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00011
  Haspin_kinase 226 feFEHRdLhldniLvdknlnvtlidlklsRlesseg 261
                    +   H d+   n Lv++ ++v lid+ +sRl  s++
     CCE30311.1 215 LGIKHGDINKYNFLVREGHEVALIDFEVSRLDCSHD 250
                    56679999999********************94444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1902.16
//
Query:       CCE30312.1  [L=276]
Description: uncharacterized protein CPUR_04160 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-08   32.6   0.1    7.1e-08   32.1   0.1    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    9.6e-07   29.0   0.5     0.0015   18.5   0.5    2.2  2  APH             Phosphotransferase enzyme family
    6.6e-06   25.9   0.0      0.021   14.4   0.1    2.5  3  Choline_kinase  Choline/ethanolamine kinase
    0.00044   19.7   0.2    0.00068   19.1   0.2    1.2  1  Pkinase         Protein kinase domain
     0.0059   16.2   0.0      0.011   15.3   0.0    1.5  1  RIO1            RIO1 family
  ------ inclusion threshold ------
      0.026   13.3   0.2      0.038   12.8   0.2    1.2  1  Pkinase_fungal  Fungal protein kinase
       0.05   13.2   0.1       0.13   11.9   0.1    1.6  2  WaaY            Lipopolysaccharide core biosynthesis protein 
      0.081   12.5   0.0       0.12   12.0   0.0    1.2  1  FTA2            Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.1   3.2e-11   7.1e-08     122     176 ..     199     248 ..     185     268 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 3.2e-11
         Kdo 122 allkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlrad 176
                 + l++  ++ a+lh++g++H+d++ +n+l+++++    e++liD++ ++l    +
  CCE30312.1 199 RDLEDCRKALARLHQLGIKHGDINKHNFLVREGH----EVVLIDFEVSKLDC-SR 248
                 5677777889***********************9....********998776.44 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00013       0.3      11     108 ..     121     214 ..     114     217 .. 0.82
   2 !   18.5   0.5   6.8e-07    0.0015     159     196 ..     210     242 ..     206     246 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                 CEEEEEEETT.-...-EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCH CS
         APH  11 nrtylvttpa.g...ryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaal 105
                 +r+y vt+p+     +++++++  +++   ++ e a+++ + + gv  P+ l   t +++ +   ++ e+++g+  ++       p+ le++  +la+l
  CCE30312.1 121 QRVYVVTHPRiNdggPVLMKIAVWPQEIDWTETEIAIYQRICDKGV-GPKFLGHVTEGTDGRVIGFITEWLGGARSAE-------PRDLEDCRKALARL 211
                 567777766654556777777665556777889*************.9999999999999999999************.......88999999999999 PP

                 HCH CS
         APH 106 hqv 108
                 hq+
  CCE30312.1 212 HQL 214
                 997 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 6.8e-07
                 H--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 159 llpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 +l+   + ++ HgD++ +N+lv++++  v  +iDfe +
  CCE30312.1 210 RLH---QLGIKHGDINKHNFLVREGHEVV--LIDFEVS 242
                 444...78999************888888..****966 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00032      0.72      13      52 ..     145     186 ..     134     217 .. 0.67
   2 !   14.4   0.1   9.4e-06     0.021     145     177 ..     214     245 ..     196     256 .. 0.81
   3 ?   -2.2   0.0       1.2   2.6e+03     126     142 ..     250     266 ..     245     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00032
                     TCTTCCHHHHHHHHHHHHHHTTSSS-EEEEETTE...EEEE-- CS
  Choline_kinase  13 kteelidretElvvfallserglgpklygifenG...rieefi 52 
                       +e+  +etE+ +++++ ++g+gpk++g  ++G   r+  fi
      CCE30312.1 145 P-QEIDWTETEIAIYQRICDKGVGPKFLGHVTEGtdgRVIGFI 186
                     4.6788899*******************988764122554444 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 9.4e-06
                     EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEE CS
  Choline_kinase 145 vvfcHnDlqegNillnkeekklvlIDFEYagyn 177
                     +   H D+ ++N+l+  e +++vlIDFE +   
      CCE30312.1 214 LGIKHGDINKHNFLV-REGHEVVLIDFEVSKLD 245
                     6667***********.9***********99876 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.2
                     HHHHHHHTHHHHHHCHG CS
  Choline_kinase 126 dlekelekleklleele 142
                     +le+e++ l+++le+++
      CCE30312.1 250 ELEDEMNALKNWLESTD 266
                     6899********98765 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2     3e-07   0.00068     109     147 ..     206     244 ..     201     257 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3e-07
                 HHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEE CS
     Pkinase 109 egleylHskgiiHrDlKpeNiLidekgelKitDFGlake 147
                 ++l+ lH+ gi H D+ ++N+L+ e  e+ ++DF ++k 
  CCE30312.1 206 KALARLHQLGIKHGDINKHNFLVREGHEVVLIDFEVSKL 244
                 799*********************8888******99985 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     5e-06     0.011     120     149 ..     209     239 ..     194     258 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5e-06
                 HHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 120 klykeaglvHaDLSeyNvlvded.kvviIDv 149
                 + +++ g+ H+D+++ N lv e+ +vv+ID+
  CCE30312.1 209 ARLHQLGIKHGDINKHNFLVREGhEVVLIDF 239
                 445689999*********************8 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   1.7e-05     0.038     312     360 ..     201     243 ..     199     256 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlak 360
                     l+D+ k++ +L+ + gi H Di  +N l+      ++++ +LiD+++ k
      CCE30312.1 201 LEDCRKALARLH-QLGIKHGDINKHNFLVR-----EGHEVVLIDFEVSK 243
                     79**********.*****************.....78999****99865 PP

>> WaaY  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   5.8e-05      0.13     144     181 ..     204     242 ..     198     261 .. 0.82
   2 ?   -1.7   0.0      0.81   1.8e+03     144     169 ..     251     275 ..     245     276 .] 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.8e-05
        WaaY 144 ikqsieklhqlgmvsgdphrgnfivkk.devriidlsgk 181
                  ++++ +lhqlg+  gd  + nf+v++ +ev +id+   
  CCE30312.1 204 CRKALARLHQLGIKHGDINKHNFLVREgHEVVLIDFEVS 242
                 578899*******************86269999997644 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.81
        WaaY 144 ikqsieklhqlgmvsgdphrgnfivk 169
                 +++ +++l++  + s dp  g f+v+
  CCE30312.1 251 LEDEMNALKNW-LESTDPQGGTFVVQ 275
                 56667777654.6799********98 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.2e-05      0.12     153     204 ..     178     227 ..     150     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.2e-05
        FTA2 153 kkrpiraIVKelellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                  +  + +++ e   l +  + e+++l++ ++ l +lh+lgI + D++++n++
  CCE30312.1 178 TDGRVIGFITE--WLGGARSAEPRDLEDCRKALARLHQLGIKHGDINKHNFL 227
                 55567888888..668899999***************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2109.20
//
Query:       CCE30313.1  [L=277]
Description: uncharacterized protein CPUR_04161 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-08   33.3   0.5    7.3e-08   32.0   0.2    1.7  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    2.2e-06   27.4   0.0      0.029   14.0   0.1    2.2  2  Choline_kinase  Choline/ethanolamine kinase
    1.3e-05   25.3   0.4    0.00023   21.2   0.4    2.0  2  APH             Phosphotransferase enzyme family
      9e-05   22.0   0.4    0.00013   21.5   0.4    1.1  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.041   13.5   0.0      0.073   12.7   0.0    1.4  1  RIO1            RIO1 family
      0.052   13.2   0.1       0.11   12.1   0.1    1.6  1  WaaY            Lipopolysaccharide core biosynthesis protein 
      0.065   12.0   0.1      0.087   11.6   0.1    1.1  1  Pkinase_fungal  Fungal protein kinase
       0.17   11.5   0.0       0.23   11.0   0.0    1.2  1  FTA2            Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.7   1.6e+03     172     191 ..      98     117 ..      85     127 .. 0.72
   2 !   32.0   0.2   3.2e-11   7.3e-08     129     189 ..     207     262 ..     188     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.7
         Kdo 172 rlradrwrekdLarLkrsfl 191
                    +  w+ + +++L++s++
  CCE30313.1  98 DEVNSGWQTAKFDELEFSLQ 117
                 55578899999999999965 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 3.2e-11
         Kdo 129 rliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradrwrekdLarLkrs 189
                 ++ a+lh++g++H+d++ +n+l+++++    e++liD++ ++l    +   e+++++Lk +
  CCE30313.1 207 KALARLHQLGIKHGDINKHNFLVRERH----EVALIDFEVSKLDC-SHVELEEEMNALKDR 262
                 6789**********************9....********999887.666667777777665 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   6.2e-05      0.14       6      52 ..     139     187 ..     135     218 .. 0.75
   2 !   14.0   0.1   1.3e-05     0.029     145     178 ..     215     247 ..     199     260 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.2e-05
                     EEEEE-TTCTTCCHHHHHHHHHHHHHHTTSSS-EEEEE...TTEEEEE-- CS
  Choline_kinase   6 llRiygkkteelidretElvvfallserglgpklygif...enGrieefi 52 
                     l++i     ++l  +etE+ v++++ ++g+gpk++g     +nGr+  fi
      CCE30313.1 139 LMKIAVWP-QQLDWMETEIAVYQRICDKGVGPKFLGHVtegPNGRVIGFI 187
                     55555554.78899********************9975233688888887 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.3e-05
                     EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEEE CS
  Choline_kinase 145 vvfcHnDlqegNillnkeekklvlIDFEYagyny 178
                     +   H D+ ++N+l+  e++++ lIDFE +   +
      CCE30313.1 215 LGIKHGDINKHNFLV-RERHEVALIDFEVSKLDC 247
                     5667***********.9***********998765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0043       9.7      12     108 ..     123     215 ..     115     218 .. 0.79
   2 !   21.2   0.4     1e-07   0.00023     157     198 ..     206     245 ..     200     252 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0043
                 EEEEEEETT.-...-EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHH CS
         APH  12 rtylvttpa.g...ryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalh 106
                 r+y  t+p+     +++++++  ++    ++ e a+++ + + gv  P+ l   t +   +   ++ e+++g   ++       p+ l+++  +la+lh
  CCE30313.1 123 RVYVATHPRiNgggPVLMKIAVWPQQLDWMETEIAVYQRICDKGV-GPKFLGHVTEGPNGRVIGFIAEWLGGVRSAE-------PRDLDDCRKALARLH 213
                 555555555523456666665555556778899************.99****999999999999999**99999999.......888999999999999 PP

                 CH CS
         APH 107 qv 108
                 q+
  CCE30313.1 214 QL 215
                 97 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 1e-07
                 HHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 157 aallpgelptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 ++ l++  + ++ HgD++ +N+lv+ + ++v ++iDfe ++l
  CCE30313.1 206 RKALARLHQLGIKHGDINKHNFLVR-ERHEV-ALIDFEVSKL 245
                 3333335689***************.77887.9****97765 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.4   5.7e-08   0.00013     109     148 ..     207     246 ..     202     262 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.7e-08
                 HHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEES CS
     Pkinase 109 egleylHskgiiHrDlKpeNiLidekgelKitDFGlakel 148
                 ++l+ lH+ gi H D+ ++N+L+ e+ e+ ++DF ++k  
  CCE30313.1 207 KALARLHQLGIKHGDINKHNFLVRERHEVALIDFEVSKLD 246
                 799********************************99865 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.2e-05     0.073     120     150 ..     210     241 ..     195     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
                 HHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1 120 klykeaglvHaDLSeyNvlvded.kvviIDvs 150
                 + +++ g+ H+D+++ N lv e  +v +ID+ 
  CCE30313.1 210 ARLHQLGIKHGDINKHNFLVRERhEVALIDFE 241
                 445689999*************99******85 PP

>> WaaY  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.8e-05      0.11     144     179 ..     205     241 ..     183     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.8e-05
        WaaY 144 ikqsieklhqlgmvsgdphrgnfivkk.devriidls 179
                  ++++ +lhqlg+  gd  + nf+v++ +ev +id+ 
  CCE30313.1 205 CRKALARLHQLGIKHGDINKHNFLVRErHEVALIDFE 241
                 577899******************975379****975 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.9e-05     0.087     312     360 ..     202     244 ..     200     273 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.9e-05
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlak 360
                     l D+ k++ +L+ + gi H Di  +N l+      ++++  LiD+++ k
      CCE30313.1 202 LDDCRKALARLH-QLGIKHGDINKHNFLVR-----ERHEVALIDFEVSK 244
                     67999*******.*****************.....56778889888765 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001      0.23     156     204 ..     182     228 ..     152     243 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
        FTA2 156 piraIVKelellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                  + +++ e   l +  + e+++l++ ++ l +lh+lgI + D++++n++
  CCE30313.1 182 RVIGFIAE--WLGGVRSAEPRDLDDCRKALARLHQLGIKHGDINKHNFL 228
                 56777888..568889999***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2275.81
//
Query:       CCE30314.1  [L=260]
Description: uncharacterized protein CPUR_04162 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-07   31.2   0.1    2.2e-07   30.4   0.1    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    5.8e-07   29.7   0.2    0.00058   19.8   0.5    2.4  2  APH             Phosphotransferase enzyme family
    2.1e-05   24.2   0.1       0.02   14.5   0.1    2.1  2  Choline_kinase  Choline/ethanolamine kinase
    0.00033   20.1   0.4    0.00049   19.5   0.4    1.1  1  Pkinase         Protein kinase domain
     0.0059   16.2   0.0     0.0092   15.6   0.0    1.3  1  RIO1            RIO1 family
  ------ inclusion threshold ------
      0.022   14.4   0.0      0.032   13.9   0.0    1.2  1  FTA2            Kinetochore Sim4 complex subunit FTA2
      0.052   12.3   0.4      0.072   11.9   0.4    1.1  1  Pkinase_fungal  Fungal protein kinase
      0.075   12.6   0.1       0.14   11.8   0.1    1.4  1  WaaY            Lipopolysaccharide core biosynthesis protein 


Domain annotation for each model (and alignments):
>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1   9.8e-11   2.2e-07     123     171 ..     170     214 ..     154     223 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 9.8e-11
         Kdo 123 llkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarl 171
                  l +  ++ a+lh++g++H+d++ +n+l+++++    e++liD++ ++l
  CCE30314.1 170 DLDDCRKALARLHQLGIKHGDINKHNFLVREGH----EVVLIDFEVSKL 214
                 5566667899**********************9....*******97765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00017      0.38      37     108 ..     121     184 ..     103     187 .. 0.93
   2 !   19.8   0.5   2.6e-07   0.00058     157     197 ..     178     213 ..     173     221 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  37 irrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqv 108
                 i++e a+++ + + gv  P+ l   t ++  ++  ++ e+v g+  ++       p+ l+++  +la+lhq+
  CCE30314.1 121 IESEIAVYQRICDKGV-GPKFLGHVTEGTNGRIIGFITEWVSGARSAE-------PRDLDDCRKALARLHQL 184
                 789*************.9******************************.......89999999999999997 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 2.6e-07
                 HHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 157 aallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 +a+l    + ++ HgD++ +N+lv++++  v  +iDfe ++
  CCE30314.1 178 LARL---HQLGIKHGDINKHNFLVREGHEVV--LIDFEVSK 213
                 3444...48999*************888888..****9765 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00063       1.4      20      53 ..     121     157 ..     115     187 .. 0.68
   2 !   14.5   0.1   9.1e-06      0.02     145     178 ..     184     216 ..     168     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00063
                     HHHHHHHHHHHHHTTSSS-EEEEE...TTEEEEE--T CS
  Choline_kinase  20 retElvvfallserglgpklygif...enGrieefie 53 
                      e+E+ v++++ ++g+gpk++g     +nGri  fi 
      CCE30314.1 121 IESEIAVYQRICDKGVGPKFLGHVtegTNGRIIGFIT 157
                     689******************9862225788887774 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 9.1e-06
                     EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEEE CS
  Choline_kinase 145 vvfcHnDlqegNillnkeekklvlIDFEYagyny 178
                     +   H D+ ++N+l+  e +++vlIDFE +   +
      CCE30314.1 184 LGIKHGDINKHNFLV-REGHEVVLIDFEVSKLDC 216
                     5667***********.9***********998765 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.4   2.2e-07   0.00049     109     148 ..     176     215 ..     171     228 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.2e-07
                 HHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEES CS
     Pkinase 109 egleylHskgiiHrDlKpeNiLidekgelKitDFGlakel 148
                 ++l+ lH+ gi H D+ ++N+L+ e  e+ ++DF ++k  
  CCE30314.1 176 KALARLHQLGIKHGDINKHNFLVREGHEVVLIDFEVSKLD 215
                 799*********************8888*******99875 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.1e-06    0.0092     120     149 ..     179     209 ..     162     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.1e-06
                 HHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 120 klykeaglvHaDLSeyNvlvded.kvviIDv 149
                 + +++ g+ H+D+++ N lv e+ +vv+ID+
  CCE30314.1 179 ARLHQLGIKHGDINKHNFLVREGhEVVLIDF 209
                 445689999*********************8 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.4e-05     0.032     151     204 ..     146     197 ..     123     212 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
        FTA2 151 dgkkrpiraIVKelellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 +g +  i +++ e   +++  + e+++l++ ++ l +lh+lgI + D++++n++
  CCE30314.1 146 EGTNGRIIGFITE--WVSGARSAEPRDLDDCRKALARLHQLGIKHGDINKHNFL 197
                 5666779999999..67999*******************************996 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   3.2e-05     0.072     312     360 ..     171     213 ..     169     227 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.2e-05
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlak 360
                     l D+ k++ +L+ + gi H Di  +N l+      ++++ +LiD+++ k
      CCE30314.1 171 LDDCRKALARLH-QLGIKHGDINKHNFLVR-----EGHEVVLIDFEVSK 213
                     67999*******.*****************.....78999****99865 PP

>> WaaY  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.1e-05      0.14     144     179 ..     174     210 ..     154     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.1e-05
        WaaY 144 ikqsieklhqlgmvsgdphrgnfivkk.devriidls 179
                  ++++ +lhqlg+  gd  + nf+v++ +ev +id+ 
  CCE30314.1 174 CRKALARLHQLGIKHGDINKHNFLVREgHEVVLIDFE 210
                 578899*******************862689999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2189.88
//
Query:       CCE30315.1  [L=447]
Description: related to rRNA processing protein EBP2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-88  296.4  17.3    3.3e-88  295.7  17.3    1.2  1  Ebp2      Eukaryotic rRNA processing protein EBP2
  ------ inclusion threshold ------
      0.017   15.2   2.0      0.017   15.2   2.0    2.1  2  DUF1517   Protein of unknown function (DUF1517)
       0.19   11.9   1.2       0.48   10.6   1.2    1.6  1  VIT       Vault protein inter-alpha-trypsin domain


Domain annotation for each model (and alignments):
>> Ebp2  Eukaryotic rRNA processing protein EBP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.7  17.3   5.5e-92   3.3e-88       8     268 .]     182     441 ..     175     441 .. 0.94

  Alignments for each domain:
  == domain 1  score: 295.7 bits;  conditional E-value: 5.5e-92
        Ebp2   8 alekgelkegedvvpekkkkltinnkeaLkekleeikl...kklpwvetldltsk...paeiedvedDlkRElaFykqaleavkearkrlkklgvpfkR 100
                 ++ ++e k++ed++p+  ++ltinn++aL+++le++++   + + +++++++ s+    ++i+dv+dDl+RElaFy+q+l+a+k +r+ l ++gvpf+R
  CCE30315.1 182 DF-DDEDKDEEDIKPH--TRLTINNTSALQAALERVAIlhnQRAAFATHQSVSSStktAESIPDVSDDLQRELAFYSQCLDAAKIGRANLLAEGVPFSR 277
                 66.4477899999999..9*******************99999**********9988778889************************************ PP

        Ebp2 101 PeDYFAEMvKsDehMekvkekLleeqaakkaseearkqRelkkfgKqvqveklqeRqkeKketlekikklkkkrkkldfle.eeeedefdvaleealkk 198
                 P+DYFAEMvK+D+hMekvk+ L+ee++akkas+eark+R+lkkfgKqvqv+klqeRqk K+etl+kik+lk+kr+++     ++e+d fdv+++++l++
  CCE30315.1 278 PKDYFAEMVKEDAHMEKVKALLIEEASAKKASAEARKLRDLKKFGKQVQVAKLQERQKAKRETLDKIKNLKRKRQESGGDMaTNEADIFDVSVDNELAS 376
                 ************************************************************************999998766799*************88 PP

        Ebp2 199 kkkkkkkkkkgkknkkrkakdkKfGfGGkkrgsKsndaessadvsgfsakkkkkkkgkkkkkkRpgksrR 268
                 ++k+k +++++++++kr++k++K+GfGGkkr++Ks+da ss d+s+f++kk      k++ k+Rpgk+ R
  CCE30315.1 377 HSKRKVATERAGTGAKRQKKNAKYGFGGKKRHAKSGDAISSGDLSHFNTKKM-----KAGVKSRPGKNGR 441
                 888888889999**************************************94.....578899***9976 PP

>> DUF1517  Protein of unknown function (DUF1517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.49   2.9e+03     131     150 ..     200     219 ..     191     226 .. 0.76
   2 ?   15.2   2.0   2.9e-06     0.017      43     106 ..     293     357 ..     281     393 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.49
     DUF1517 131 diasaedlkeaLqalasisa 150
                 +i+++++l++aL+++a ++ 
  CCE30315.1 200 TINNTSALQAALERVAILHN 219
                 78899999999999887665 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.9e-06
     DUF1517  43 evvlaLlrheeywvyaasesdqfk.edsaeakfnqlsleerskfeeetlsnvngvkrkkeaskke 106
                 e v+aLl +e++   a++e+++++  ++  ++++   l+er+k ++etl ++++ krk+++s  +
  CCE30315.1 293 EKVKALLIEEASAKKASAEARKLRdLKKFGKQVQVAKLQERQKAKRETLDKIKNLKRKRQESGGD 357
                 67999*******************9999999999999******************9999988875 PP

>> VIT  Vault protein inter-alpha-trypsin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.2   8.1e-05      0.48      53      98 ..     322     372 ..     319     384 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.1e-05
         VIT  53 ggkvikgevkekeearkeyeeava.....qgktaglleqeepdvftvsvgn 98 
                 g++v +++++e+++a++e  + ++     ++++ g + ++e d+f vsv n
  CCE30315.1 322 GKQVQVAKLQERQKAKRETLDKIKnlkrkRQESGGDMATNEADIFDVSVDN 372
                 668889************9999998998888899999999*********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1313  (0.0732333); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3603.61
//
Query:       CCE30316.1  [L=235]
Description: uncharacterized protein CPUR_04164 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1708.18
//
Query:       CCE30317.1  [L=867]
Description: probable subtilisin-like serine protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-41  143.2   1.1    1.5e-41  142.6   1.1    1.2  1  Peptidase_S8    Subtilase family
    3.4e-16   60.0   0.7    5.7e-16   59.2   0.1    1.7  2  fn3_5           Fn3-like domain
    4.4e-05   23.3   0.0    0.00026   20.8   0.0    2.2  2  FlgD_ig         FlgD Ig-like domain
  ------ inclusion threshold ------
      0.078   12.9   0.4        0.2   11.5   0.4    1.6  1  Glyco_hydro_45  Glycosyl hydrolase family 45


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   1.1   3.3e-45   1.5e-41       1     284 [.     144     562 ..     144     583 .. 0.94

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 3.3e-45
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   gkgv+va++D+Gvd +hp l +   g+  lv+   + + +  ++++++  +++  d +g    HGthvAGi+aa+ ++  ++ g a+g++++s++v+
    CCE30317.1 144 GKGVKVALIDSGVDFTHPALGNGCFGKGCLVSFGTDLVGDAYNGSNKAVPDDIPMDCEG----HGTHVAGIVAAQ-KNPMGFTGAATGVTLGSYRVF 235
                   89*****************************9999999999999999999999999999....************.888999*************** PP

                   STTSB-HH..HHHHHHHHHHHHCT-SEEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEES CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaaedkvdvinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgayt 194
                   + +g  ++  + +++a+++a+ed++ +i+ s+    + + +++++ al + r v ++gv v++SaGN+g++g        +++ +  k+v++v++y+
    CCE30317.1 236 GCEGDGAN--DIIMAAFNKAFEDGANIISASIV---QAQGWSEDPWALTASRIV-EHGVPVIMSAGNDGNSGL-----FFISDGADGKGVTAVASYD 321
                   77777764..8999******************9...8888999998899*****.9*************4444.....2333333336********* PP

                   ................................................................................................. CS
                   ................................................................................................. RF
  Peptidase_S8 195 ................................................................................................. 194
                                                                                                                    
    CCE30317.1 322 sldaplisfhasyqidngremdfiytdgdastwgvsmplyatsldsgvaddackplpantpdlskyialirrggcdfsdklnnlvakgtqyvmfynd 418
                   ************************************************************************************************* PP

                   ............................................................TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCC CS
                   ............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 ............................................................tegkiapfSsrGpssdgklkpdivapGgnivstwsrq 231
                                                                               t g i++fSs Gp+++ ++kp++ apGg i+st +  
    CCE30317.1 419 eagtvivspddptvvkstgivspeigiawvkqlkagrkvtvnvlppaksklslstqpnniTGGTISTFSSWGPTWEMEFKPQVGAPGGLILSTFPVA 515
                   *******************************************************************************************999999 PP

                   CHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-EE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 232 snnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqdl 284
                   +       sy  +sGTSm++P+ a+++Al+ +    l pe +  +l  tA++ 
    CCE30317.1 516 K------GSYAVISGTSMSCPLTAAIIALISEVRGTLDPELMTNLLSSTAKPQ 562
                   9......339****************************************876 PP

>> fn3_5  Fn3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.1   1.4e+04      68      85 ..     451     468 ..     450     479 .. 0.72
   2 !   59.2   0.1   1.3e-19   5.7e-16       2     114 ..     603     716 ..     602     717 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.1
       fn3_5  68 vpAnssktvtvtldlpsd 85 
                 ++A++++tv+v   ++s+
  CCE30317.1 451 LKAGRKVTVNVLPPAKSK 468
                 678889999887666554 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 1.3e-19
       fn3_5   2 aLkeigdk.fsftltlkNtsnkaltykvsandvlTdladkeegklilkaaspeike...aaltfetskvtvpAnssktvtvtldlpsdakk.kngyfve 95 
                 +++++++  ++ ++t++N + +a+tyk++++++lT ++  ++  ++++    +      a+l+f+++++t+pA+ s+ v vt+ +  ++ + k+  +++
  CCE30317.1 603 SFNDTDHLaTNLNFTITNKGSRAVTYKLDQVPSLTMYTLGKDAVNTMPFPNEA--VnaqASLSFSQNSITLPAGHSTVVGVTAKPAAGVINpKRLALWS 699
                 688886666999*************************9776666665544433..2346**************************87765579****** PP

       fn3_5  96 GfvtlkdsedknpelsvPY 114
                 G+vt+++++++   ls+PY
  CCE30317.1 700 GYVTINGTDGS--VLSMPY 716
                 ***********..****** PP

>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.69   3.1e+03      14      37 ..     602     626 ..     594     633 .. 0.77
   2 !   20.8   0.0   5.7e-08   0.00026      46      75 ..     811     840 ..     807     842 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.69
                 EEEE..ESSSEEEEEEEE-SS--EE CS
     FlgD_ig  14 lgve.lpeaadevtvtikDasGevV 37 
                 l+++  ++ a+++++ti+++  + V
  CCE30317.1 602 LSFNdTDHLATNLNFTITNKGSRAV 626
                 5555677789999*****9976666 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 5.7e-08
                 SSEEEEEEE-SB-TTS-B--SEEEEEEEEE CS
     FlgD_ig  46 saGvvsftWdGtdndGnkladGaYtvkvta 75 
                 + G  sf WdG+ ++G+++++G Y++ v a
  CCE30317.1 811 ERGWISFPWDGKLESGKYAPAGHYRFVVRA 840
                 56889**********************987 PP

>> Glyco_hydro_45  Glycosyl hydrolase family 45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   4.5e-05       0.2     121     162 ..     151     190 ..     136     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.5e-05
  Glyco_hydro_45 121 lqdqnfdlqipggglgifdkgctaefgkeaalggdqyggvks 162
                     l d   d+  p  g g f kgc   fg    l gd y g + 
      CCE30317.1 151 LIDSGVDFTHPALGNGCFGKGCLVSFGT--DLVGDAYNGSNK 190
                     457789**********************..9******99654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (867 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 6519.93
//
Query:       CCE30318.1  [L=1179]
Description: probable protein kinase PAK1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-48  163.2   0.1    1.4e-32  113.1   0.0    2.2  2  Pkinase      Protein kinase domain
    2.1e-21   76.4   0.1    2.2e-19   69.8   0.0    3.4  2  Pkinase_Tyr  Protein tyrosine kinase
    0.00037   20.5   0.1      0.012   15.6   0.0    2.8  3  APH          Phosphotransferase enzyme family
    0.00043   19.7   0.0     0.0013   18.2   0.0    1.7  1  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.3   2.8e-16   1.3e-12       1      85 [.     108     202 ..     108     226 .. 0.86
   2 !  113.1   0.0   3.1e-36   1.4e-32      95     264 .]     405     623 ..     389     623 .. 0.88

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 2.8e-16
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH........HHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke........kkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggel 85 
                 ye++e++G+G  GkV  a++ etg+ vA+K+i + ++k +          +k+ +Ei+ilkk++h n+v l+ev+ +   +++y+vle+ve ge+
  CCE30318.1 108 YEVIEEIGRGMHGKVKLARSLETGENVAIKIIPRFSKKRRLGkltalspqDKTKKEIAILKKIRHANVVALLEVIDDpeLKKIYMVLEHVELGEI 202
                 7899****************************87666655445678999999************************96668**********8874 PP

  == domain 2  score: 113.1 bits;  conditional E-value: 3.1e-36
                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS....................BCTTTSCGGGS-HHHH.... CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk....................ltsfvgtseYlAPEvl.... 169
                 ++ e+a++ ++ ++ gleylH +g++HrD+Kp+N+L  ++  +Ki+DFG++   +   +                    l + vgt+ + APE+     
  CCE30318.1 405 FTFEQARSTFRDTVLGLEYLHYQGVVHRDIKPANLLWTKDHRVKISDFGVSYFGRPIRDgeaddtvseseakdfdddleLAKTVGTPAFFAPELCytdl 503
                 77889*********************************9999********98877666667799*******************************9888 PP

                 ...TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHT.HHHHHHHCTSHH...HHHTTS.....................-HHHHHHHHH CS
     Pkinase 170 ...keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldq.lekilkilgetkeklpeasei.....................seeakdllkk 243
                     + ++s+++DvWslGv+ly+l++ + pf +e++ + ++k++++ ++  ++ l++++ ++  a++                      ++ + dll++
  CCE30318.1 504 dsgLQPKVSEQIDVWSLGVTLYCLIYARIPFLAEDEFQMFRKIATDeVHIPRRRLKPVDPSTSPAEHSlykrhnahpyrddndleyedvDNLLYDLLRQ 602
                 76444666************************99999988888777355555566665555555555468999999************9999******* PP

                 HT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 244 llkkdpkkRltaeellqhpyl 264
                 +l k+p+kR+  +++++hp++
  CCE30318.1 603 MLIKNPEKRIRLRDIKRHPWV 623
                 ********************6 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   4.9e-23   2.2e-19       3     220 ..     110     548 ..     108     561 .. 0.87
   2 ?   -0.6   0.0      0.15   6.7e+02     228     257 ..     590     619 ..     564     620 .. 0.83

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 4.9e-23
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.........HHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.........keelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLl 89 
                  + +++G+G  GkV  ++      ++ ++Va+K++ + +++++         +++  +e++i+kk++h n+v+ll v+   + +++++v+e v+ G++ 
   CCE30318.1 110 VIEEIGRGMHGKVKLARSL----ETGENVAIKIIPRFSKKRRlgkltalspQDKTKKEIAILKKIRHANVVALLEVIDdpELKKIYMVLEHVELGEIV 203
                  6799************999....8889999999966444443222223334778889*********************877788***********996 PP

                  HHHHHT............................................................................................ CS
  Pkinase_Tyr  90 kfLrkk............................................................................................ 95 
                     rkk                                                                                            
   CCE30318.1 204 W--RKKglphicqydrklveremaggeaptaeeiqynellerrhaikeikrakmaqnfagpsdfwsvehgaaddrsssagpwsrissqdnfammdrss 299
                  4..55567999*************************************************************************************** PP

                  .................................................................................................. CS
  Pkinase_Tyr  96 .................................................................................................. 95 
                                                                                                                    
   CCE30318.1 300 spsgsrqssaapsrslsfassnllpskmsedalwvedmetpgpldsntpydntlfgasaeegsrgptfrersssiadsiishmssvdynpfahdpfae 397
                  *************************************************************************************************9 PP

                  ...CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTH......EETTTSSEE...........EETTSSTSGGGGS- CS
  Pkinase_Tyr  96 ...ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLa......rdiekddey...........vkkeeaklpvkWma 173
                       + +t+++  s   +   G+eyL+ + +vHrd+   N L ++++ vkisDfG++      rd e dd+             +  ++     + a
   CCE30318.1 398 dysFVPCFTFEQARSTFRDTVLGLEYLHYQGVVHRDIKPANLLWTKDHRVKISDFGVSyfgrpiRDGEADDTVseseakdfdddLELAKTVGTPAFFA 495
                  9988899*************************************************98555444444555554222211111111122334566899* PP

                  HHHHHHSE.......EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHT CS
  Pkinase_Tyr 174 pEslkekk.......ftsksDvWsfGvllwEiftlgespypglkneevleklke 220
                  pE   +         ++++ DvWs Gv+l+ ++  ++ p+   ++ ++++k+ +
   CCE30318.1 496 PELCYTDLdsglqpkVSEQIDVWSLGVTLYCLIY-ARIPFLAEDEFQMFRKIAT 548
                  **9988877889999***************9987.8999988888888888854 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.15
                  TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 228 ekcpeelyelmkkcweedpeeRptfselve 257
                  e++ + ly+l+++ + ++pe+R +++++ +
   CCE30318.1 590 EDVDNLLYDLLRQMLIKNPEKRIRLRDIKR 619
                  4577889*****************999975 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.063   2.8e+02      29      84 ..     153     205 ..     141     222 .. 0.74
   2 !   15.6   0.0   2.6e-06     0.012     152     204 ..     410     463 ..     388     464 .. 0.81
   3 ?   -2.2   0.0      0.68   3.1e+03      49      93 ..    1050    1097 ..    1041    1122 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.063
                 -TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE---.-EE-SS CS
         APH  29 pparaaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvp.grsllr 84 
                 + + ++ ++ +e a+l+ ++ a+v    ev++   d e + + + ++e v+ g++++r
  CCE30318.1 153 ALS-PQDKTKKEIAILKKIRHANVvALLEVID---DPELKKI-YMVLEHVElGEIVWR 205
                 444.8899**************9988888888...6666665.555555543777787 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.6e-06
                 HHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHH CS
         APH 152 vlaalaallpg...elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyD 204
                 ++ +++++++g      ++++H+D++p Nll++  d+rv  + Df+ +  g p+ D
  CCE30318.1 410 ARSTFRDTVLGleyLHYQGVVHRDIKPANLLWT-KDHRV-KISDFGVSYFGRPIRD 463
                 6677777777777778899**************.66776.6888888888877766 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.68
                  HTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS...HHHHHHHHH CS
         APH   49 kagvpvPevlagdtddeeigllfalieyvpgrsllr...klsaaqlpe 93  
                  ++ +p+P   ++   ++e+++  +l+++++g s ++   ++  + +p+
  CCE30318.1 1050 DSSLPAPLSRDCADTEAEHLRTRRLVSRQEGSSEADtppAMVKETTPA 1097
                  455688888887777777777899999999999999666555555555 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.8e-07    0.0013     159     250 ..     423     534 ..     417     543 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.8e-07
  Kinase-like 159 nLqakglvhgkftvdnllldekgglmlggftaLv.....ragtkvvl.seve................kgfaPpEllgsrggytrknktkmthkldaW 234
                  +L+ +g+vh ++++ nll+ ++ ++++ +f+  +     r+g+     se e                 +f  pEl+          + k++ ++d+W
   CCE30318.1 423 YLHYQGVVHRDIKPANLLWTKDHRVKISDFGVSYfgrpiRDGEADDTvSESEakdfdddlelaktvgtPAFFAPELCYTDLD--SGLQPKVSEQIDVW 518
                  89***************************9754333333888765443777788*********5555544555555555332..4457799******* PP

  Kinase-like 235 qlGlviyriwclklPl 250
                   lG++ y +  + +P+
   CCE30318.1 519 SLGVTLYCLIYARIPF 534
                  ********99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 7851.81
//
Query:       CCE30319.1  [L=358]
Description: uncharacterized protein CPUR_04167 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2485.30
//
Query:       CCE30320.1  [L=1329]
Description: related to ubiquitin-protein ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-67  225.8   0.0    1.2e-66  225.3   0.0    1.2  1  HECT      HECT-domain (ubiquitin-transferase)
    6.7e-17   61.5   3.1    6.7e-17   61.5   3.1    2.1  2  AZUL      Amino-terminal Zinc-binding domain of ubiquitin lig


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.3   0.0   1.4e-70   1.2e-66       3     306 ..    1006    1328 ..    1004    1329 .] 0.87

  Alignments for each domain:
  == domain 1  score: 225.3 bits;  conditional E-value: 1.4e-70
                  HHHHHT-GGGSSEEESSTTSSSEEE-TTHHHHS....HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT-.---TCHHHHH-...HHHHHHHHHHH. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx RF
        HECT    3 lskelldpklglfeeesedsgtlypkpssseeellklfeflGkvlGkaiyeeilldlpfsraflkfllgeekitledleeid...pelakslkells 96  
                   ++e ldp++g f + +++++  ++ p s  ee   +fe++G ++++a+y++++l+++f++af+++llg ++++  +l++i    pela+ l+ l++
  CCE30320.1 1006 AIAECLDPEYGAF-TVDSRTRMAWFVPGSLVEE--WKFEMIGLLMSLAVYNGLTLPITFPKAFYRKLLG-QPVE--QLYHIAdgwPELASGLTTLQE 1096
                  67899********.4688888888888764444..46********************************.5665..888884477************ PP

                  .HS-GGG...GT-...BSEEEEETTEEEEEE....................SSTTGGG..SB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHT CS
                  xxxxxxxxxxxxx...xxxxxxxxxxxxxxx....................xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   97 lesnteevedlaL...tFtipenagasatie....................LipnGan..ipVtnenkkeYiklyvnyllkksvekqleaflkGfse 168 
                  +++++ +ved+     +F+i+  +g++ t                      L    +n    Vtnen++ Y++ yv+yl++ s+++q++af +Gf+ 
  CCE30320.1 1097 WDEQDGSVEDIFArtyEFSISA-FGHEVTLPmtktdsawpqgipkpptlssLAAAADNdaPLVTNENRDAYVSDYVRYLTDVSIRPQFRAFERGFRA 1192
                  **********966634666553.888875554444555666666666655554443335478*********************************** PP

                  TS-HHHHTTS-HHHHHHHHBCSSS.--HHHHHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-B--EEEEE-S... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
        HECT  169 vipskalklfdaeelellisGedelidvedlrrnteykggynaesetiewlweilkefspeekrlfLqFvTgssrlPlgGfaelhpkftierksk.. 263 
                  +++sk+l+l++++ l+++i+G ++ id+++lrr+++y g ++++++t++ +w+i+k+f++ +kr++L+FvT+s+r+P+gG++++  +f+i+++++  
  CCE30320.1 1193 CLESKSLSLLTPSILQSVIEGVQD-IDMSELRRHARYVG-WDSSHRTVKDFWSIVKKFDDTMKRKLLEFVTASDRVPVGGMKNV--QFVIQKNGEed 1285
                  ***********************7.************75.********************************************..******98743 PP

                  .-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHHH--XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  264 edetrLPtahTCfnlLklpdYsskeilkekLltAieetegFel 306 
                   +  +LPta TC  +L lp+Y ++e+l+e+L +A+e+++gF++
  CCE30320.1 1286 GEGGHLPTAYTCYGTLLLPEYRDREVLRERLGMALENAQGFGF 1328
                  45679************************************97 PP

>> AZUL  Amino-terminal Zinc-binding domain of ubiquitin ligase E3A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   3.1   7.5e-21   6.7e-17       7      59 .]      86     144 ..      81     144 .. 0.99
   2 ?   -2.8   0.2      0.89     8e+03      32      46 ..     558     572 ..     553     578 .. 0.77

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 7.5e-21
        AZUL   7 qYfyQLthGCgsknCtnptCassr.....kapvrrltpnsAaalAleLakqde.eagLC 59 
                 qY++QL++GCgs+ C + tC+++r     k pvrr++p+sA++lA+ La+q + ++gLC
  CCE30320.1  86 QYIHQLRDGCGSSFCITATCFTCRkrlagKGPVRRYNPTSARTLAVCLASQSQpDRGLC 144
                 8********************************************************** PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.89
        AZUL  32 apvrrltpnsAaalA 46 
                 +  r+++pn+Aaa +
  CCE30320.1 558 RLARKAKPNNAAASS 572
                 4568999****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.44
# Mc/sec: 9005.28
//
Query:       CCE30321.1  [L=392]
Description: related to alkylated dna repair protein alkb homolog [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-31  109.6   0.0    2.8e-30  106.0   0.0    2.0  2  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.016   2.9e+02       1      47 [.      92     141 ..      92     153 .. 0.79
   2 !  106.0   0.0   1.6e-34   2.8e-30      35     196 .]     186     388 ..     168     388 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.016
  2OG-FeII_Oxy_2   1 glllipnflsaeeaaellrell...eegpfrqptilggkrvsvqqtllgp 47 
                     gll++pn++++e +++ll ++l    ++p++q ++  + ++++++t  ++
      CCE30321.1  92 GLLIVPNLVPPEVQKSLLCRMLhrdLSNPIHQTNMHLHYTLPYHETETRS 141
                     78999******999999998887744788999999988888888775554 PP

  == domain 2  score: 106.0 bits;  conditional E-value: 1.6e-34
  2OG-FeII_Oxy_2  35 gkrvsvqqtllgplgwatdgpgyrysekesvdakplspfpeallrlverlvkaagpegwspnaalvnfYrdgariglHqDkeesaleapivSlSL 129
                     +k++  +q+l + l+w+t+g +y+++++ ++ +++ + fp++l r++e l     +++ +++aa+vnfY++g+ +++H+D +e+  ++ ++SlS+
      CCE30321.1 186 HKPLTARQVLTRRLHWVTLGGQYDWTSR-VYPDQEPPRFPADLSRFLETL-----FPETRAEAAIVNFYSPGDTMMMHRDVSEE-SDKGLISLSF 273
                     6788999999****************99.9********************.....6899***********************98.9********* PP

  2OG-FeII_Oxy_2 130 Gasatf.............................rfgkesree.............eiiailLesGdllvmggesrkayHgvprikkdtapele 182
                     G+ + f                             +                     +   ++L+sGd++ m+ e+r+a+Hgvp++ k+t p ++
      CCE30321.1 274 GCDCLFmiapnsshshhntepeqrtddshapesspK-------MenqktqppqngpkKYLLLRLRSGDAIYMTKEARYAWHGVPKVIKGTCPPYL 361
                     ******666666666666666555555555555552.......0444444556666699999***************************776666 PP

  2OG-FeII_Oxy_2 183 .............leelrtrRinlTfR 196
                                  +  ++++Rinl++R
      CCE30321.1 362 rdwpaengeyadwEGWMGNKRINLNVR 388
                     77777778888999999********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3088.56
//
Query:       CCE30322.1  [L=439]
Description: related to probable gtp-binding protein engb [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-15   56.1   1.4    5.2e-15   55.5   0.0    2.1  3  MMR_HSR1      50S ribosome-binding GTPase
    5.2e-07   29.9   0.1     0.0046   17.0   0.1    2.4  2  Dynamin_N     Dynamin family
    7.9e-06   25.5   0.0    1.7e-05   24.4   0.0    1.6  1  GTP_EFTU      Elongation factor Tu GTP binding domain
     0.0014   18.5   0.4      0.072   13.0   0.2    2.7  2  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.025   14.3   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
      0.013   14.8   0.1      0.087   12.1   0.1    2.0  1  AIG1          AIG1 family
      0.013   14.9   0.1      0.032   13.6   0.0    1.6  2  FtsK_SpoIIIE  FtsK/SpoIIIE family
       0.03   13.9   0.0       0.14   11.7   0.0    1.9  2  FeoB_N        Ferrous iron transport protein B
      0.049   12.9   0.0        0.1   11.9   0.0    1.4  1  Septin        Septin
      0.067   13.7   0.0       0.18   12.3   0.0    1.7  1  ABC_tran      ABC transporter


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   1.2        10   1.8e+04      24      34 ..     124     134 ..     116     143 .. 0.46
   2 !   55.5   0.0   2.9e-18   5.2e-15       1     114 []     185     323 ..     185     323 .. 0.81
   3 ?   -3.1   0.0       4.5     8e+03      49      58 ..     397     405 ..     386     418 .. 0.62

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 10
                 EEESSSTTSSS CS
    MMR_HSR1  24 aivsdkpgtTr 34 
                 +i++ +  tT+
  CCE30322.1 124 SITTTTTTTTT 134
                 33333333333 PP

  == domain 2  score: 55.5 bits;  conditional E-value: 2.9e-18
                 EEEEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSEEEEEEE...ETTEE......................EEEEECGGCSS.HHHHHH.HHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge..kaivsdkpgtTrdinegrvk...lkgke......................ielvDtpGlie.gaseek.glgkaf 70 
                 e++++G +N+GKSt++na++g+  +a+vs++pg T+ +n + v    +                          ++lvDtpG +  +++ ++ +   ++
  CCE30322.1 185 EIILLGASNAGKSTFLNAILGSvnAARVSRRPGLTTLMNAFGVGpppT---TtttsthqpsvsifkdidppqhsLILVDTPG-YGfKSQLNWgESVIQY 279
                 589******************98679***************9984440...13444455556666666666666********.9778899998788889 PP

                 HHHHC.TSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  71 lalee.adlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                 l+ +     ++l+++ se+kl p d+ + ++l ea+ ++++vl+k
  CCE30322.1 280 LDQRAmLRGAVLLLS-SEKKLLPHDKWMLRTLAEANTRTLVVLTK 323
                 987774588888887.447799**********9999999999997 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4.5
                 EEEECGGCSS CS
    MMR_HSR1  49 elvDtpGlie 58 
                  ++D++G ++
  CCE30322.1 397 AILDMAG-FS 405
                 6899999.54 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   2.6e-06    0.0046       1      21 [.     186     206 ..     186     222 .. 0.87
   2 !   10.6   0.0   0.00025      0.45      86     167 ..     239     323 ..     227     324 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.6e-06
                 EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlge 21 
                 i+++G+ ++GKS++lna+lg+
  CCE30322.1 186 IILLGASNAGKSTFLNAILGS 206
                 7899***************97 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00025
                 --SS-EEEEEEETTS-SEEEEE---B-SSSGTTS.HHHHHHH.STTEE..EEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N  86 iskkvillkilsllvkgltlvDlPGldsvnkrdq.elvkeyi.kkadi..ilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                  +  v ++k+ ++ ++ l lvD+PG+    + +  e v +y+ ++a +   ++++s++++l   ++  l r + + ++rt+vvltk
  CCE30322.1 239 HQPSVSIFKDIDPPQHSLILVDTPGYGFKSQLNWgESVIQYLdQRAMLrgAVLLLSSEKKLLPHDKWML-RTLAEANTRTLVVLTK 323
                 445588999999*************98877766678888999555543224566666666776666655.5566678999999998 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   9.7e-09   1.7e-05       5     153 ..     185     349 ..     182     419 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 9.7e-09
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH.HHHSTHCHSHHHHHHTSCSSCEEEEEE...T..TCSSEEEEEEEESSS.....GGGHHHHHHH.. CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgeka.eeervlDtlkeErergiTiksaaisle...k..etkkylinliDtPGH.....vdFskevirg.. 90 
                  i+++g  ++GK+T++ ++l + +a +   +++ + ++ +           T +s++       k  +  ++ + l+DtPG       ++ + vi+   
  CCE30322.1 185 EIILLGASNAGKSTFLNAILGSVNAARV--SRRpGLTTLMNAFGVGPPPTTTTTSTHQPSVsifKdiDPPQHSLILVDTPGYgfksqLNWGESVIQYld 281
                 57889999************77777555..3342546667776666666666666554333355446999***********633333578888888744 PP

                 .HHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST....HHHHHHHHHHHHHHHHHH CS
    GTP_EFTU  91 .lrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrl....kaelkeiveevkqklsrk 153
                   ++l gavl++++++   p  + +lr + + ++++ v+++K+D+      +++ e++++++++l + 
  CCE30322.1 282 qRAMLRGAVLLLSSEKKLLPHDKWMLRTLAEANTRTLVVLTKADKSkagwTERCVEMADDIQTELADL 349
                 456799****************************************6666666666666666666433 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2     4e-05     0.072      99     125 ..     183     209 ..     160     268 .. 0.82
   2 ?    2.5   0.0     0.067   1.2e+02      38      75 ..     306     342 ..     288     356 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4e-05
                  TSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelel 125
                     ++l+G S +GKSt++na+l++ ++
   CCE30322.1 183 TPEIILLGASNAGKSTFLNAILGSVNA 209
                  55679*****************98443 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.067
                  HHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHT CS
  RsgA_GTPase  38 fLvlaeekgiepvivlnKiDlleeeeeleelkeeleal 75 
                  +L ++ e++ + ++vl+K+D  +    +e+  e   ++
   CCE30322.1 306 MLRTLAEANTRTLVVLTKADKSKAGW-TERCVEMADDI 342
                  566778899999********988766.55555544444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.4e-05     0.025      15      42 ..     175     203 ..     169     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
      AAA_29  15 htieidlkg.atlltGpsGsGKSTllDAi 42 
                 ++++ +++   ++l G+s +GKST+l Ai
  CCE30322.1 175 RQHPPNMHTpEIILLGASNAGKSTFLNAI 203
                 5666666667799*************998 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.8e-05     0.087       2     133 ..     185     331 ..     184     359 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.8e-05
                 EEEEESSTTSSHHHHHHHHHTS--................SS--TTTS---SS-EEEEE.EETT.....EEEEEEE--SC.CCTTCCHHCHHHHHHHHH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkka................Fesklsaqsvtkkcqkksr.twdg.....kkinViDTPgl.fdlsvsadkiskeivrcl 77 
                 +i+l+G + +GkS+  N+ilg+                  F      ++ t++ ++ s    ++     +++  +DTPg  f ++    +  +++++ l
  CCE30322.1 185 EIILLGASNAGKSTFLNAILGSVNaarvsrrpglttlmnaFGVGPPPTTTTTSTHQPSVsIFKDidppqHSLILVDTPGYgFKSQL---NWGESVIQYL 280
                 59******************986556666666655555554444333333222222222122222222255666666665343333...3344555555 PP

                 HHCTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTCC CS
        AIG1  78 llseegihalllvlslgrfteedekalktlkelFGekilkylivvftrkddledds 133
                    +    a+ll  s +++  +d+ +l+tl e     +   + vv+t++d++++  
  CCE30322.1 281 DQRAMLRGAVLLLSSEKKLLPHDKWMLRTLAE-----ANTRTLVVLTKADKSKAGW 331
                 55555555666666666777777777777643.....4556666666666666655 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         2   3.6e+03     173     197 ..      19      43 ..      16      58 .. 0.78
   2 ?   13.6   0.0   1.8e-05     0.032      39      63 ..     183     207 ..     169     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2
                   ...-----------B-----EEEEE CS
  FtsK_SpoIIIE 173 gpsygvhvlvtagrelekrpslvvi 197
                    ps   h+ v++++ +++rp+++  
    CCE30322.1  19 APSRSRHISVSTHQCIRQRPAIRRK 43 
                   6788899999999999999999865 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.8e-05
                   -.SEEEE--TTSSHHHHHHHHHHHH CS
  FtsK_SpoIIIE  39 ashllvaGatgsGKStalntLilSl 63 
                   ++ ++++Ga+  GKSt+ln+++ S+
    CCE30322.1 183 TPEIILLGASNAGKSTFLNAILGSV 207
                   2799****************99875 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.6e-05      0.14       3      34 ..     186     219 ..     184     225 .. 0.80
   2 ?   -0.9   0.0      0.57     1e+03      91     118 ..     300     327 ..     248     339 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.6e-05
                 EEEEESTTSSHHHHHHHHHTTS..EEEEESTTSS CS
      FeoB_N   3 valvGnpnvGkttlfnaltgak..qkvgNwpGvt 34 
                 ++l+G  n+Gk+t++na+ g+    +v+  pG t
  CCE30322.1 186 IILLGASNAGKSTFLNAILGSVnaARVSRRPGLT 219
                 899***************9975225677777766 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.57
                 HHHHHHHHHHHHHTTSSEEEEEETHHHH CS
      FeoB_N  91 lernLyLtlqllelgvpvvlalnmidea 118
                 l  +  ++  l+e +++++++l + d+ 
  CCE30322.1 300 LPHDKWMLRTLAEANTRTLVVLTKADKS 327
                 4444456666778888888888887765 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.6e-05       0.1       7      92 ..     186     283 ..     182     288 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.6e-05
                 EEEEEBTTSSCCCCCCTTSSSS----...........--------------S-EEEEEEEEET..TCEEEEEEEE---BSSSSSHHCCC.HHHHHHHHH CS
      Septin   7 lmvvGesglGkttlintlfetdliee...........ekleeasekkkktveikkkkvvieed..gvklnltviDtpgfGdavdnsksw.epiveyide 91 
                 +++ G+s  Gk+t++n+++ +    +           + +      +++t++ ++ +v+i +d    +  l ++Dtpg+G +   + +w e +++y+d+
  CCE30322.1 186 IILLGASNAGKSTFLNAILGSVNAARvsrrpglttlmNAFGVGPPPTTTTTSTHQPSVSIFKDidPPQHSLILVDTPGYGFKS--QLNWgESVIQYLDQ 282
                 8999**************9998877788999998887333333334555555555555554432256789999*******654..44553678888887 PP

                 H CS
      Septin  92 q 92 
                 +
  CCE30322.1 283 R 283
                 6 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0001      0.18      14      36 ..     186     208 ..     182     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
                 EEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllk 36 
                 + ++G + aGKSt+l++++g ++
  CCE30322.1 186 IILLGASNAGKSTFLNAILGSVN 208
                 679****************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3267.78
//
Query:       CCE30323.1  [L=504]
Description: uncharacterized protein CPUR_04171 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-40  136.5   1.1    1.8e-34  118.6   1.0    2.2  2  zf-C3HC   C3HC zinc finger-like
    6.4e-29  100.0   1.5    3.2e-27   94.5   0.1    2.6  2  Rsm1      Rsm1-like
    7.8e-05   23.2   0.2     0.0019   18.8   0.1    2.5  2  BIR       Inhibitor of Apoptosis domain


Domain annotation for each model (and alignments):
>> zf-C3HC  C3HC zinc finger-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   1.0   3.1e-38   1.8e-34       1     131 [.      99     238 ..      99     240 .. 0.96
   2 !   15.9   0.0   1.7e-06      0.01      28     120 ..     285     383 ..     276     396 .. 0.72

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 3.1e-38
     zf-C3HC   1 pwdredllrRlkTfkalk.WtskpselselkcAkrGWkcvskdrlkCevCgaslvlkl........ksseeesdeqlnkklaekylkqlveaHeenClW 90 
                 p dr++ll+Rl+Tf++ + Wt+kp++++e ++AkrGW+c+ k++++C+ C+++lv+kl        k+s    +++ +++laeky++ ++++H+++ClW
  CCE30323.1  99 PGDRDELLKRLATFQDITdWTPKPDKINENEWAKRGWICQGKEKVRCVLCHKELVVKLsknedesaKPSAALASSEIADALAEKYSDLVISSHQQDCLW 197
                 679*******************************************************999999888888889999*********************** PP

     zf-C3HC  91 rnkecpesleslplakpeellsdlkkrldellqladklpsl 131
                 r+++c++sl +l   +++++l+ l++r+del  ++++lp++
  CCE30323.1 198 RKRGCEDSLLRLSFSNTQATLASLRQRYDELSSRSSSLPYE 238
                 *************************************9987 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.7e-06
     zf-C3HC  28 elkcAkrGWkcvs.......kdrlkCevCgaslvlklksseeesdeqlnkklaekylkqlv..eaHeenClWrnkecp.esleslplakpeellsdlkk 116
                 +l++A  GW+          ++   C +C ++l l     ++++ + + + ++   +++l+  ++H+  C+W++   + +s+     +k+  +ls+  k
  CCE30323.1 285 ALALALMGWQGLTdsrigavSNSASCHTCFRRLGLW--MFKSKEVDPQGNVVVPAPMDHLDpvREHRLFCPWKDARAQsRSALTS--DKQPPTLSTAWK 379
                 5789999**995448999999**************9..6777777777888888888888878**********998874444333..333334444333 PP

     zf-C3HC 117 rlde 120
                  l +
  CCE30323.1 380 TLIQ 383
                 3333 PP

>> Rsm1  Rsm1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.2    0.0085        51      17      68 ..     140     205 ..     108     225 .. 0.74
   2 !   94.5   0.1   5.3e-31   3.2e-27       1      92 []     285     386 ..     285     386 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0085
        Rsm1  17 lglvsCeaCfrrlGLWmfkskedgels...............vvkrld.vleeHleycPwknakaqke 68 
                  + v C  C++ l   + k+++++                   ++  d v+++H + c w+    +  
  CCE30323.1 140 KEKVRCVLCHKELVVKLSKNEDESAKPsaalasseiadalaeKYS--DlVISSHQQDCLWRKRGCEDS 205
                 45799********99999998887554778887777777532222..226677777777777665554 PP

  == domain 2  score: 94.5 bits;  conditional E-value: 5.3e-31
        Rsm1   1 AlalalfGWdsltssrlg....lvsCeaCfrrlGLWmfkskedgels......vvkrldvleeHleycPwknakaqkelakeseakeeeskagwellkq 89 
                 Alalal+GW++lt+sr+g    ++sC++CfrrlGLWmfkske++++       ++++ld+++eH+ +cPwk a+aq+++a +s+++  +  ++w++l q
  CCE30323.1 285 ALALALMGWQGLTDSRIGavsnSASCHTCFRRLGLWMFKSKEVDPQGnvvvpaPMDHLDPVREHRLFCPWKDARAQSRSALTSDKQPPTLSTAWKTLIQ 383
                 899***************999999*******************98879999999********************************99999*****999 PP

        Rsm1  90 llk 92 
                  +k
  CCE30323.1 384 TIK 386
                 876 PP

>> BIR  Inhibitor of Apoptosis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   3.2e-07    0.0019       1      49 [.     108     152 ..     108     165 .. 0.83
   2 ?    1.8   0.0     0.067     4e+02      35      56 ..     303     324 ..     276     353 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.2e-07
         BIR   1 RlatFkk..nWpeskkeakpsaeeLaeaGFyytptseskdnvqCfyCklal 49 
                 RlatF++  +W+ +    k +++e a+ G++++++    ++v+C++C+++l
  CCE30323.1 108 RLATFQDitDWTPKP--DKINENEWAKRGWICQGK----EKVRCVLCHKEL 152
                 9****9865599554..568889************....9********998 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.067
         BIR  35 eskdnvqCfyCklaldgweedD 56 
                   ++++ C+ C ++l  w  + 
  CCE30323.1 303 AVSNSASCHTCFRRLGLWMFKS 324
                 4567899********9997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3531.33
//
Query:       CCE30324.1  [L=461]
Description: related to SRP40-suppressor of mutant AC40 of RNA polymerase I and III [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-20   74.2   2.1    1.2e-20   74.2   2.1    2.9  3  SRP40_C     SRP40, C-terminal domain


Domain annotation for each model (and alignments):
>> SRP40_C  SRP40, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   4.7         1   1.8e+04      50      58 ..     147     155 ..     143     165 .. 0.72
   2 ?   -6.2   2.6         1   1.8e+04      53      57 ..     329     333 ..     322     337 .. 0.50
   3 !   74.2   2.1   6.5e-25   1.2e-20       1      76 []     392     459 ..     392     459 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1
     SRP40_C  50 rkeKnKkKr 58 
                 +k+KnKkK 
  CCE30324.1 147 KKKKNKKKT 155
                 466777775 PP

  == domain 2  score: -6.2 bits;  conditional E-value: 1
     SRP40_C  53 KnKkK 57 
                 K K K
  CCE30324.1 329 KSKSK 333
                 33333 PP

  == domain 3  score: 74.2 bits;  conditional E-value: 6.5e-25
     SRP40_C   1 pFrRvdeeevvevadkrladnsyeakkgaeddyGekanedLiktrGkgFrkeKnKkKrgsyrggeIdtesvnSikF 76 
                 +F+R+ +++v  ++d+++a+n+y +      +y+++a+edLi+t+GkgF+keKnKkK+gs+rgg+Id++++ S+ F
  CCE30324.1 392 RFSRI-PKDV--KVDPKFASNQYVH-----VGYSQRAHEDLIVTKGKGFTKEKNKKKKGSFRGGAIDITHSGSVYF 459
                 7****.6663..4599*******95.....68************************************99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2093  (0.116738); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                       276  (0.0153941); expected 17.9 (0.001)
Passed Fwd filter:                       137  (0.00764125); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.41u 0.43s 00:00:02.84 Elapsed: 00:00:00.67
# Mc/sec: 2062.94
//
Query:       CCE30325.1  [L=581]
Description: uncharacterized protein CPUR_04173 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.1    8.6   6.2       0.37   11.1   0.5    2.5  2  DUF2530   Protein of unknown function (DUF2530)


Domain annotation for each model (and alignments):
>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5     2e-05      0.37       3      59 ..     286     342 ..     284     344 .. 0.93
   2 ?   -1.4   0.7      0.16   2.8e+03      16      41 ..     402     427 ..     398     445 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2e-05
     DUF2530   3 pPeLprrLtdprpvivvgtllWlvalvvllvvgdaleswlpvclaGlvvGllGlaif 59 
                  P++p++L  p++++ + ++l  +a++ + +++++ +++l ++l  l+  ++G+a f
  CCE30325.1 286 RPAVPAKLFSPVHILSILSCLLSIAILTTAILRRDGTAILAISLLSLASTVVGYASF 342
                 69*****************************************99999999999855 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.16
     DUF2530  16 vivvgtllWlvalvvllvvgdalesw 41 
                  +++gt+l ++++v+l   + +l+  
  CCE30325.1 402 LMALGTMLLMLSVVLLGNCTWELKVF 427
                 67889999999999998777777663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4152.44
//
Query:       CCE30326.1  [L=585]
Description: related to CECR1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-22   80.5   0.0    3.3e-21   76.0   0.0    2.5  1  A_deaminase  Adenosine/AMP deaminase
  ------ inclusion threshold ------
      0.074   13.4   0.0       0.22   11.8   0.0    1.8  1  YozD         YozD-like protein


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   3.7e-25   3.3e-21       6     327 ..     143     559 ..     137     560 .. 0.81

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 3.7e-25
                  EEEEECCCSS-HHHHHHHHHHHCHT..SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHT................................... CS
  A_deaminase   6 dlHvHldgclnpktllrlakkkgikeldekvveedeklltlqekfesLkeflydlsvdvlvlh................................... 68 
                  +lH+H ++cl p+ ll++ak  ++      +++++ +l + +++ ++ ++   ++s+++   +                                   
   CCE30326.1 143 HLHIHYNACLPPRVLLDIAKGMDRM-----FITSNLPL-VPDSEYTNYDRCELQFSITSREREipgnlfspeyhprqtmrfdeflheftnhynrlgpe 234
                  79*****************988755.....66665554.44556677888888888888777777888889999************************ PP

                  .......................................CCCCCCHHHHHHCCCCCHCTTCCCCCCCCSHHHHH..............HH-GC.STCC CS
  A_deaminase  69 .......................................wlievvrllavekakdlakdfvkylevifsPlfea..............tagpq.lpel 112
                                                           + + r+++  + +d+++d  +y+e++  P+f+               ++g   +  +
   CCE30326.1 235 ewllekllfheeeahgvlqtaagawekfnsrtrmmkglfNYETAYRQYTRRCLEDFMRDNIQYAEIR--PTFMKsnrlyndegtaridNRGIMgIIIE 330
                  *************************************998999**********************86..99999999999888665442222223333 PP

                  HHHHCCCCCCCCCCHCCT-EEEEEECCETT.TCCGHCCCHHHHHHCCCC...CCCCCCCCC-TTSTTGGG.....HHHHHCCC..CHTT-EEEEEESS CS
  A_deaminase 113 evvlkvvdgfdsvedeskvkerlilvksrk.peewseeinelasyyrdy...tvvnldllndekiepasl.....flklraea..gkstllltpHaGE 199
                  ev+  + d  +s    ++   ++i  + r+  +e  ++    + +++++    +++ dl+++e ++ + +      l+ +++    + ++ +  H+GE
   CCE30326.1 331 EVTRFQHDV-ASKGGYFG-GLKVIYTAPRSmSPEEVRQSLGECLRFKQEwpkWIAGYDLAGEESKGRPLKdfvkeLLDFKKNCaeANVDIPFLFHCGE 426
                  333333333.33333344.4566666666674455555555566776655669********999988877766643334444300345677899**** PP

                  SS-CHH.....HHHHHHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-SHHHH.HH CS
  A_deaminase 200 aggleh.....vveAllllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgttLiee.Ya 291
                  + ++ +     +v+Alll +a+rigHG  l k p ++++++++ + le+cP+SN  lg    +a + +  +l ++++ ++n+D+ +   +tL+++ Y+
   CCE30326.1 427 TLDMGTevdgnLVDALLL-GAKRIGHGFALTKHPYIMQQMRRRGVCLELCPISNEVLGLTPRVAGHSMYSLLANNVHCTINSDNGAFYRSTLSHDfYQ 523
                  *9875333444999*998.*************************************************************************998689 PP

                  HHHHHHT--HHHHHHHHHHHHHCSSS-HHHHHHHCH CS
  A_deaminase 292 iaaqvfklseedlaelarNsvkqsflsadekkklld 327
                  ++   +  +   +++l   s++ + l+++ kk  l+
   CCE30326.1 524 VMIGRADMDLFGWKQLVLWSIEHACLDEADKKSVLN 559
                  999999*************************99886 PP

>> YozD  YozD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.5e-05      0.22      19      53 ..      27      60 ..      19      63 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.5e-05
        YozD 19 kELvkRGyvPaeeEleelADitFdYllekciidEe 53
                 +Lv RG++P+e+E  ++ D    Y+ ++ ii+E+
  CCE30326.1 27 ADLVTRGFAPSENEPTNVMDPA-GYFAARQIIVED 60
                68*****************965.799999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 4119.25
//
Query:       CCE30327.1  [L=173]
Description: uncharacterized protein CPUR_04175 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-30  104.8   7.2    6.1e-30  104.1   7.2    1.3  1  HsbA      Hydrophobic surface binding protein A
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.44   10.6   0.0    1.9  2  DUF1664   Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   7.2   6.8e-34   6.1e-30       3     119 ..      25     143 ..      23     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 6.8e-34
                 HHHHHHHHHHHHHHHHHHHHHH--SH...HHHHHHHHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHH.HCHHHHHHHHHHHHHTHHHHHHHT-HHH CS
        HsbA   3 tvisdittistavtaldtavnafnGg.asalpilsasnalvsaikkattdaqasapltdeealalaqavq.tLepdvkaaldaliaKkpafdkagltsl 99 
                 +v++d+ ti+++++ +++avn+fnG+ +sa pil+a  +l+s+ik+at++a+a++ +++ +a  ++++++ +++p+++aal a+++Kk++f+ agl+++
  CCE30327.1  25 QVKKDLVTINADTQEVTKAVNGFNGDlKSAPPILTAQHKLTSDIKTATDHAKAAGKVNEPDADFIINYISgQFQPSIDAALSAIKSKKDKFQGAGLAGT 123
                 89***********************999******************************************99*************************** PP

                 HHHHHHHHHHHHHHHHHHHH CS
        HsbA 100 vlssLqdlkaasdaLsdalv 119
                 v++sL++lk ++daLsdal+
  CCE30327.1 124 VKTSLTQLKGDADALSDALI 143
                 ******************98 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.9e-05      0.44      84     118 ..      18      52 ..      10      55 .. 0.89
   2 ?   -2.2   0.0      0.45     4e+03      66      66 ..     117     117 ..      96     141 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.9e-05
     DUF1664  84 eikeevtevredlseigedvesvkeavegleskle 118
                  i ++v +v++dl +i+ d ++v +av+g+++ l+
  CCE30327.1  18 VIPRDVGQVKKDLVTINADTQEVTKAVNGFNGDLK 52 
                 57799************************999887 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.45
     DUF1664  66 s 66 
                  
  CCE30327.1 117 G 117
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1239.63
//
Query:       CCE30328.1  [L=510]
Description: related to pisatin demethylase cytochrome P450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-65  220.8   0.0    3.9e-65  220.4   0.0    1.1  1  p450      Cytochrome P450
  ------ inclusion threshold ------
       0.11   11.5   0.1       0.17   10.8   0.1    1.3  1  ANTH      ANTH domain


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.4   0.0   4.4e-69   3.9e-65      89     443 ..     133     475 ..      97     494 .. 0.87

  Alignments for each domain:
  == domain 1  score: 220.4 bits;  conditional E-value: 4.4e-69
                 TCGHHHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHC CS
        p450  89 fangekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllsk 186
                 + + +++++ R++  +++ ++ +l  +e++v ++++ l++++++++g +  +d +++++ + +dv+g+ +Fg++f++l++ ++  ++k++++ +    k
  CCE30328.1 133 TRDKDDHTRRRKTWDKAFSTK-ALrDYEPRVAKYTNLLLQRIEEHQGIP--FDASKWFNFYSFDVMGDMAFGENFNMLNSGHAHAFMKLIHKHLIAAGK 228
                 334488899999999****99.999************************..******************************************877766 PP

                 HHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCT.SSSSHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 187 ssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkge.sklsdeelaatvlellfaGvdTtsstlsw 284
                  s  l+ lfpl++ +p   ++++       +++   +   +re+ +++     d  + ll++  e+ ++ s  ++ +l+a +  + +aG+dTt++tls 
  CCE30328.1 229 LS-HLIWLFPLIRAMPILNREDAA------AQVWLLKQISHREKNRPD---VPDVFSWLLSDF-ERLEKpSRQDRFNLQADMQLIAIAGSDTTAATLSS 316
                 55.677788989989877766666......344444444666777777...578888888885.555556899999*********************** PP

                 HHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS CS
        p450 285 aLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk.dvvirgylipkGtevivnlyalhrdpevfpnPee 382
                  +++La+n++   kl++E+d+ ++++ e++++ l+k+++l+a+i+E+LRl p+vp++l+R+++   + i++++ip  t+v ++ ya  rd+ +f  P++
  CCE30328.1 317 LFFLLATNKTECVKLQQELDTCFPGATELDQSKLSKMKFLQACINEALRLLPPVPSGLQRMTPPeGLMIGDRFIPGETIVTIPSYAQYRDERFFAFPNS 415
                 ***********************88899*********************************976599******************************** PP

                 --GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSG CS
        p450 383 FdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdp 443
                 F peR+  + +   ++s  ++PFG G+ +C+G+ l+ me++l+ +t+L++F+v+l +e+++
  CCE30328.1 416 FIPERWTTRPELI-KDSSIYVPFGSGKYACVGKALGLMEVRLVTSTILRRFDVDLAHEKAE 475
                 *********9954.9****************************************998776 PP

>> ANTH  ANTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   1.9e-05      0.17      71     128 ..     126     183 ..     124     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.9e-05
                 CHHHHHHHHTT-----TT---TSHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHSS-. CS
        ANTH  71 psveqellsarrrisellnlssfddssskswdysafiraYakyLderlefhrklkvdk 128
                 p++  ++ + +++ ++  + +++  s ++ +dy + + +Y+++L +r+e h+  ++d 
  CCE30328.1 126 PAISVHMTRDKDDHTRRRKTWDKAFSTKALRDYEPRVAKYTNLLLQRIEEHQGIPFDA 183
                 556667788899999999999998899*************************999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3685.85
//
Query:       CCE30329.1  [L=495]
Description: uncharacterized protein CPUR_04177 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-25   90.8   0.1    4.1e-12   46.4   0.0    2.2  2  IPPT             IPP transferase
    2.6e-24   85.8   0.0    5.4e-24   84.8   0.0    1.6  1  Lysine_decarbox  Possible lysine decarboxylase
    3.9e-11   42.8   0.0    7.6e-11   41.8   0.0    1.4  1  IPT              Isopentenyl transferase
    7.2e-05   22.4   3.4     0.0014   18.3   4.2    2.5  2  LDcluster4       SLOG cluster4 family
     0.0073   15.6   0.9      0.017   14.4   0.9    1.6  1  LSDAT_prok       SLOG in TRPM, prokaryote
  ------ inclusion threshold ------
      0.013   16.0   0.0      0.025   15.1   0.0    1.5  1  AAA_18           AAA domain
       0.03   14.6   0.4      0.054   13.8   0.4    1.4  1  Hydin_ADK        Hydin Adenylate kinase-like domain


Domain annotation for each model (and alignments):
>> IPPT  IPP transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   1.6e-15   4.1e-12       1      65 [.      40     102 ..      40     117 .. 0.92
   2 !   42.4   0.2   2.7e-14   6.8e-11     142     224 ..     120     231 ..     103     233 .. 0.77

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 1.6e-15
                 TTBTT-HTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-H CS
        IPPT   1 qvYrgmdIgTakptaeeragvphhlidildpdeeysvadFqkdalkaieeilargkipilvGGTg 65 
                 q Y+   I+Ta+p +ee + vphhlid l++dee    d++++a +++e+i ar+ +pilvGG+ 
  CCE30329.1  40 QCYKPGGIITARPLPEETDDVPHHLIDYLEADEE--PEDYVSQAVRIMEDISARDGLPILVGGST 102
                 789999*************************997..57*************************96 PP

  == domain 2  score: 42.4 bits;  conditional E-value: 2.7e-14
                 EEEEEECSHHHHHHHHHHHHHHHHHTTHHHHHHHHHH.............C.CCCSTTSHHHHHHHTT...............SS-HHHHHHHHHHHHH CS
        IPPT 142 lviglesdreelyeridkRvdemleaGlleEveklla.............k.alqaigykelleyleg...............elsleeaieklkaatr 211
                 l + l  +r+  ++ +++R +eml++GlleE+e+l++             + +++aigy+e l+yl+                e+ +ee +  ++a+t 
  CCE30329.1 120 LALTLVPQRSAYQRLVETRGEEMLQRGLLEELEELHHlekrllhgvsdlsRgVWKAIGYREYLPYLQAvrsvngkadgcssqeEYLREEGRLSMNASTL 218
                 5556656888888999********************87777777766655335*************63333333444444433566899********** PP

                 HHHHHHHHHHHTT CS
        IPPT 212 qyaKrQltWfrkk 224
                 +y   Ql W+r++
  CCE30329.1 219 HYGQDQLEWMRHT 231
                 **********975 PP

>> Lysine_decarbox  Possible lysine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   2.1e-27   5.4e-24       1     130 [.     332     479 ..     332     481 .. 0.89

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 2.1e-27
                      HHHHHHHHHHTTS-..EEEEEECCHHHHHCC...........TTT-SEEEEESSHHHHHHHHHHH......ESEEEE-S-SHHHHHHHHHHHHH CS
  Lysine_decarbox   1 meavakgaleaggr..viGiipkillaeeap...........neevnelvivedmeeRkealvel......adafvilPGGiGTleElleiltl 75 
                      m+ava+  + ++g+  v+G++p +l++ e               + ++ ++v+dm++Rk+ + ++      + +fv+l GG+GTleElle+ t+
       CCE30329.1 332 MGAVASTLVALSGPsaVHGVVPAALARYESGgagdgrvngeyASRFGRRTVVRDMHTRKRLMTQMvregapGSGFVALSGGYGTLEELLEAATW 425
                      89999999988888789*********95544599999987777777778***********9988744444457********************* PP

                      HHTTSS-S.EEEEEEGGGCCHHHHHHHHHHHHTTSS-GGGGGCEEEESSHHHHHH CS
  Lysine_decarbox  76 iqlgkhqkvPiillnpkgyydkllefletlveegtisekareliivvddpeevle 130
                       qlg+h+   + ++ ++g+yd ll++++++  +g++++k++++i+v+ ++eev++
       CCE30329.1 426 HQLGIHRC-GVSVFSVDGFYDGLLDWIRRVAGHGFVGNKDADIIRVARTAEEVVA 479
                      ******99.*******************************************986 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0     3e-14   7.6e-11       5     164 ..       9     159 ..       6     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 3e-14
         IPT   5 lifGatttGKtaeaiklaketgapvivlDRvqcyselavgsGrpleeelegtrRiylddrslseGvidaeeanerLikevesykdeegl.ilEGGSiSL 102
                 +i+G+t++GKt+  +++ak+    vi++D +qcy+   + + rpl+ee + +    +d  + +e   ++e++ +  +  +e  ++++gl il GGS SL
  CCE30329.1   9 AIVGPTASGKTKLGVAIAKAYLGEVISVDSLQCYKPGGIITARPLPEETDDVPHHLIDYLEADE---EPEDYVSQAVRIMEDISARDGLpILVGGSTSL 104
                 79**************************************************999998777766...89999999999999999977777********* PP

         IPT 103 lkrmakdeywnadfewevkrlrlpdedvflakakkRvrqmlrpeeegaslldElaelwkepk 164
                    + + ++   +   ++    +p++ ++     +R ++ml+      +ll+El+el++ +k
  CCE30329.1 105 TMPLLQAAFA--REYEVLALTLVPQRSAYQRLVETRGEEMLQR-----GLLEELEELHHLEK 159
                 *******999..333456667789*****************97.....99999999976544 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       3.4   8.8e+03      30      45 ..      90     105 ..      73     129 .. 0.69
   2 !   18.3   4.2   5.4e-07    0.0014       2      75 ..     288     377 ..     287     429 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.4
  LDcluster4  30 AkegavlltGgrtGvm 45 
                 A+ g+ +l Gg t++ 
  CCE30329.1  90 ARDGLPILVGGSTSLT 105
                 6777778888887654 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 5.4e-07
  LDcluster4   2 lkigVmGsaeteakeealelaeelGrliAkegavlltGgrt.GvmeaaskG..akeagGltvGilpassekehsnk.............y 75 
                   ++V+G ++ + ++++++ a++l+  + +++++l+ Gg t G+m a++    a +    + G++pa+ ++ +s               +
  CCE30329.1 288 RVVCVFGGSSGGHDSSHIDAAKALAVTLHRHDMCLVYGGGTtGIMGAVASTlvALSGPSAVHGVVPAALARYESGGagdgrvngeyasrF 377
                 679****8887788888********************99877*******99433344445668888854443333334555555554443 PP

>> LSDAT_prok  SLOG in TRPM, prokaryote
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.9   6.7e-06     0.017       2      75 ..     288     357 ..     287     368 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.7e-06
  LSDAT_prok   2 pvlvlvGgasgldeeeaarlrkllravlaplaealgavvidgGtdtGvmkllgraraaveatfpLiGVApegtV 75 
                 +v+ ++Gg sg  +++  ++++   + la ++++++++ + gG +tG+m ++     a+++   + GV p+   
  CCE30329.1 288 RVVCVFGGSSGGHDSS--HIDA--AKALAVTLHRHDMCLVYGGGTTGIMGAVASTLVALSGPSAVHGVVPAALA 357
                 5888999999888877..3333..356899**********************9999999999999999998765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   9.6e-06     0.025       1      80 [.       8      99 ..       8     154 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.6e-06
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf......gvnlrdvakenglllevdpe..........aldeskrldedkldklldaleenssaleegknlvid 80
                I++ G+ ++GKt l+ +++k   +      ++ l+++ + + +     pe          ++ e +++ ed++ ++++++e +s+  ++g ++++ 
  CCE30329.1  8 IAIVGPTASGKTKLGVAIAKA--YlgevisVDSLQCYKPGGIITARPLPEetddvphhliDYLEADEEPEDYVSQAVRIMEDISA--RDGLPILVG 99
                89****************999..44668999999999999999999999999999999999999999999999999999999987..666666664 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   2.1e-05     0.054       1      33 [.       7      39 ..       7      41 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.1e-05
   Hydin_ADK  1 aiivhGaPlsGKtatavtLakkYeaAlltiDsv 33
                ai + G+  sGKt+  v++ak+Y   ++++Ds+
  CCE30329.1  7 AIAIVGPTASGKTKLGVAIAKAYLGEVISVDSL 39
                78999**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3914.15
//
Query:       CCE30330.1  [L=1994]
Description: uncharacterized protein CPUR_04178 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.3e-195  651.0   0.0   2.2e-195  650.3   0.0    1.4  1  BLM10_mid      Proteasome-substrate-size regulator, mid regio
    8.9e-30  102.5   0.0    3.5e-29  100.6   0.0    2.2  1  DUF3437        Domain of unknown function (DUF3437)
    1.7e-19   69.8   0.1      5e-19   68.4   0.1    1.9  1  BLM10_N        Proteasome-substrate-size regulator, N-termina
  ------ inclusion threshold ------
        0.1   12.5   6.3       0.21   11.5   6.3    1.4  1  Auxin_canalis  Auxin canalisation
       0.19   11.2   2.3         13    5.2   0.0    2.8  3  CLASP_N        CLASP N terminal
       0.41   10.0   1.8       0.74    9.1   0.1    2.2  3  TMEM164        TMEM164 family
        1.3    9.4   6.2         12    6.5   0.1    4.9  5  HEAT           HEAT repeat


Domain annotation for each model (and alignments):
>> BLM10_mid  Proteasome-substrate-size regulator, mid region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  650.3   0.0  8.7e-199  2.2e-195       1     524 []     386     913 ..     386     913 .. 0.99

  Alignments for each domain:
  == domain 1  score: 650.3 bits;  conditional E-value: 8.7e-199
   BLM10_mid   1 LekLiksietffHPSnsGswtkplskfvkelikeflkRwneEekkecktpeerrLteeikkefVkiLrtvvllgifskdskvanyaqsaLklLalLePd 99 
                 Le+L++si+tffHPSn+G+wt++ls++  ++++ f++Rwn+E+++e ++p+err+t+e+kk+fV +L++ +++g+fsk+s+v++ + +aL+ La+LePd
  CCE30330.1 386 LEGLMESIDTFFHPSNQGPWTNMLSRLTLHITNAFVSRWNREQSGELDVPAERRITPELKKRFVASLKETTFMGLFSKSSRVSSCFYNALQGLAFLEPD 484
                 899************************************************************************************************ PP

   BLM10_mid 100 lilpkiLeriypsLeglnethRtiasLkalttlarvlvstklyrvhltplLslllpgIDlNDlekTlntlnfivsvaqfipiedltkeeeelsdeslal 198
                 lilp++L+riyps++gl+e+hRt++sL++l+++a+++ + k yr+h+t lL l+lpgID+NDl+kT+ tl fi+sva+++p+  ltke ++++d+++a+
  CCE30330.1 485 LILPGALQRIYPSIQGLVEVHRTTSSLNSLQMIAHIMSKLKGYRCHITALLALALPGIDANDLSKTQDTLYFIQSVAYSVPFVPLTKEGSHIHDTTMAM 583
                 *************************************************************************************************** PP

   BLM10_mid 199 efiqqevekleekkeeeeeeeefeldkeeeeaalrsStaaFeewvksfldrvftLlenlPeeskkksgklEesvvnklpatldilleslsdelfdlalk 297
                 +++q+e++++e+++++ + +++ el++eee ++lrsSta+F e+v ++l+++ftLlenlP+++++++g++E++v+n+lpa+l++l++sls+elfd+al+
  CCE30330.1 584 QWVQAEMDRMERDGQNLQIDYQNELTDEEEANILRSSTAGFGEFVLTLLGKIFTLLENLPDANQVRGGTPEDNVANALPAALSPLFSSLSPELFDMALD 682
                 *************************************************************************************************** PP

   BLM10_mid 298 kvvdfvsnnvksnavdavaellaalvkanpektlkkllpllienIreei.engAgsvr.ttseilprDraLvwnlsiLnevvrnagealLkykdellel 394
                 k+++fvs +v+++a+da+a++l+al+k+npektlk ++p+ + nIr+ei  n A+s r t+++ lprDraLvw++s+L ++v+++g+++Lkykdell +
  CCE30330.1 683 KIATFVSGHVVHQARDAMAWILNALCKVNPEKTLKVFVPMFVVNIRNEIeYNHAASDRtTGTDYLPRDRALVWHISMLAQTVVHVGREVLKYKDELLGI 781
                 *************************************************99*******78888************************************ PP

   BLM10_mid 395 lklllekcksergyvltsklvhslLltLtktyptesrlvnpeeekseelkeehWGklqedenlkikWhvPseeeidfAvelleeivepalkklekllee 493
                 + +++ekc++ + ++l+s+++h+l l+Lt+typ++ +l++p+  k+  l+ ++WG+++++ +l+i+Wh Ps  ei+fAvel+ +++++a ++le l+++
  CCE30330.1 782 AVFMQEKCRGLP-TILVSNYIHHLFLNLTHTYPIDEALYEPHVMKRG-LDVQDWGQTTRPADLTIRWHRPSPPEIEFAVELFASQTKSAAQQLELLISD 878
                 ************.*******************************777.*************************************************** PP

   BLM10_mid 494 ek....skkdkewsdelcryllllrlalsGislLf 524
                 +     + k+kewsde++r ++ +rl++sGis++f
  CCE30330.1 879 NPpvsrTGKNKEWSDEVSRLMQQIRLVISGISTMF 913
                 99***99**************************98 PP

>> DUF3437  Domain of unknown function (DUF3437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   1.4e-32   3.5e-29       2      88 .]    1906    1994 .]    1905    1994 .] 0.95

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 1.4e-32
     DUF3437    2 lerhaavlglsAlvlafpydvP..kwlpevleeLaraardpa.pirktvkktlseFkrthqDtWeedkkkFteeqledledvllspsYya 88  
                  ++rhaavlgl+Al++afpy +P  +w+pevl++Lar a+ ++  ++k+ k++lseFk+t+qD+W+ d+k Ft+eqledle+v l++sY+a
  CCE30330.1 1906 TRRHAAVLGLGALIEAFPYATPppEWMPEVLATLARRAAGDPgIVGKATKSILSEFKKTRQDSWTVDQKYFTQEQLEDLEGV-LWKSYFA 1994
                  589*****************9999************66666659**************************************.******7 PP

>> BLM10_N  Proteasome-substrate-size regulator, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.1     2e-22     5e-19       4      81 .]      34     100 ..      31     100 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 2e-22
     BLM10_N   4 eisratsygldypedeeellkeiedkkskffaRsrprtfpyeklLPYkvEsekerakyLshilknLYiAikslDiqgg 81 
                  isra s+g  yp+         +++++   +R+rprtf y+++LP++vE+e+er+++L+ ilk+LYiA+k++D+++g
  CCE30330.1  34 PISRAISPGNSYPS--------PDENNK---KRHRPRTFAYFRQLPFEVEEERERDAALDGILKQLYIALKAQDFSPG 100
                 689999******99........566777...9********************************************96 PP

>> Auxin_canalis  Auxin canalisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   6.3   8.3e-05      0.21     126     182 ..    1859    1916 ..    1809    1921 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.3e-05
  Auxin_canalis  126 ekkkeeaRaqnAqvhAavSvAgvAAAvAAvaaataasssss.kdeqaaktdaAvASAa 182 
                     ++kk +  a      Aa++ A+  AAvAAvaa +++s++    ++q ++ +aAv    
     CCE30330.1 1859 KRKKRDVTAAATATTAATAAAAATAAVAAVAATESRSETPVdMQSQITRRHAAVLGLG 1916
                     4444444555555678899999999999999999988888768889999999986555 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0051        13      44     137 ..     445     537 ..     437     542 .. 0.88
   2 ?   -3.1   0.1       1.8   4.6e+03     150     181 ..    1071    1102 ..    1067    1103 .. 0.83
   3 ?    4.9   0.0    0.0066        17     179     222 ..    1804    1848 ..    1789    1853 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0051
     CLASP_N  44 veelleclkqlleailkalssLrttlsstgchllkelaiqlkeq.ldpmveillptLlkllgdtKkiisqnanqalaallsnas.fsprilqvlsv 137
                  + ++++lk   e  +  l s ++ +ss     l+ la  + +  l   +++++p++  l+  +   +s n+ q +a ++s+++ + ++i  +l +
  CCE30330.1 445 KKRFVASLK---ETTFMGLFSKSSRVSSCFYNALQGLAFLEPDLiLPGALQRIYPSIQGLVEVHRTTSSLNSLQMIAHIMSKLKgYRCHITALLAL 537
                 578999999...99999***************************66666********************************999666666555555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.8
     CLASP_N  150 saiwLkilltrfeshkskleasllldlieksl 181 
                  + ++L++ ++ +++hks+l+++llldl++ +l
  CCE30330.1 1071 AYMLLRMKHNASARHKSELDKRLLLDLAKSCL 1102
                  56678888888889************999998 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0066
     CLASP_N  179 kslkkgleDanptVRetaRstfweffkvwPsrAksll.ssldpkv 222 
                  +++  +l+Da+ +VR+ a st+  + ++ P   +  + ++l+   
  CCE30330.1 1804 NAVSDMLSDAQLEVRSCASSTLAGMIRCSPRLIRDPMvERLQRRF 1848
                  567789**********************99876665556666555 PP

>> TMEM164  TMEM164 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00029      0.74     134     189 ..     531     586 ..     513     590 .. 0.85
   2 ?   -2.8   0.1       1.3   3.2e+03     141     170 ..     783     812 ..     760     817 .. 0.81
   3 ?   -3.1   0.0       1.5   3.8e+03      72     103 ..    1243    1281 ..    1212    1282 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00029
     TMEM164 134 ngallallfpvvntrllp.fevevyyiqHvlllvvPvyllklggvysveplsdfsws 189
                   allal++p +++  l+ ++ ++y+iq v+ + vP+  l+++g++  + +  ++w+
  CCE30330.1 531 ITALLALALPGIDANDLSkTQDTLYFIQSVA-YSVPFVPLTKEGSHIHDTTMAMQWV 586
                 4699**********99972566789999775.899***************9999996 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
     TMEM164 141 lfpvvntrllpfevevyyiqHvlllvvPvy 170
                 +f++ ++r lp+     yi+H+ l +  +y
  CCE30330.1 783 VFMQEKCRGLPTILVSNYIHHLFLNLTHTY 812
                 6899999**************999776555 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.5
     TMEM164   72 krllLvllslvfGiEig.......fKlatktviylLnpC 103 
                  kr  + +l +++G+E++       +K+at+   + Ln C
  CCE30330.1 1243 KRKKVEALKMTLGLELTkqakgahWKIATRCAFFALNMC 1281
                  444455566666666543333333899**********99 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       2.2   5.5e+03      17      30 ..     697     710 ..     693     710 .. 0.89
   2 ?    0.3   0.0      0.44   1.1e+03       4      27 ..    1601    1624 ..    1598    1627 .. 0.82
   3 ?   -4.0   0.0         7   1.8e+04      11      21 ..    1770    1780 ..    1767    1782 .. 0.83
   4 ?    6.5   0.1    0.0045        12       2      28 ..    1803    1829 ..    1802    1832 .. 0.87
   5 ?    1.1   0.0      0.25   6.3e+02      17      29 ..    1908    1920 ..    1903    1922 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHC CS
        HEAT  17 ReaAakaLgalaev 30 
                 R+a a+ L al++v
  CCE30330.1 697 RDAMAWILNALCKV 710
                 9999********96 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.44
                  HHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT    4 lllkllsDpspeVReaAakaLgal 27  
                   +l  + +p   VRea  k L+ +
  CCE30330.1 1601 DFLAHIDHPYKAVREAIGKVLCVI 1624
                  57788899********99999887 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 7
                  -SSHHHHHHHH CS
        HEAT   11 DpspeVReaAa 21  
                   +s+++R  A+
  CCE30330.1 1770 ASSWHQRLRAL 1780
                  689****9886 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0045
                  HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    2 lPlllkllsDpspeVReaAakaLgala 28  
                  ++++  +lsD   eVR+ A  +L+ ++
  CCE30330.1 1803 FNAVSDMLSDAQLEVRSCASSTLAGMI 1829
                  677889*****************9876 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.25
                  HHHHHHHHHHHHH CS
        HEAT   17 ReaAakaLgalae 29  
                  R aA++ Lgal+e
  CCE30330.1 1908 RHAAVLGLGALIE 1920
                  99*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1994 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.13u 0.28s 00:00:01.41 Elapsed: 00:00:00.42
# Mc/sec: 14192.58
//
Query:       CCE30331.1  [L=570]
Description: uncharacterized protein CPUR_04179 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 4256.88
//
Query:       CCE30332.1  [L=379]
Description: uncharacterized protein CPUR_04180 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-09   37.9   0.1    2.4e-09   37.1   0.1    1.5  1  Complex1_LYR    Complex 1 protein (LYR family)
  ------ inclusion threshold ------
       0.12   12.4   7.5       0.31   11.1   7.5    1.7  1  PRIMA1          Proline-rich membrane anchor 1
       0.35   11.6   0.2       0.35   11.6   0.2    1.8  2  Complex1_LYR_2  Complex1_LYR-like
        0.7    9.5   3.6        1.1    8.8   3.6    1.2  1  SR-25           Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.1   5.4e-13   2.4e-09       2      58 ..      17      72 ..      16      73 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 5.4e-13
  Complex1_LYR  2 qvLsLYRalLRearkfpdyntreyfrrriRdeFrknkhvtDpekieellkkgreeLe 58
                  +v+sLYRalLR+a+k+  +  r  +r+ +R +F   + +t+ + + + +++g+++L 
    CCE30332.1 17 AVISLYRALLRSADKVATPE-RSALRHAVRSRFVVDRPLTSLRLVYASMAAGYKFLS 72
                  69******************.*********************************995 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.5   6.9e-05      0.31      10      41 ..      79     112 ..      73     130 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.9e-05
      PRIMA1  10 aekvtescqeacqcrrypplp..ppppppppprl 41 
                  +++te +q +++ rr+pp p  +p pppppp+l
  CCE30332.1  79 DQTSTEYAQVVSHLRRMPPPPnrTPLPPPPPPKL 112
                 56788999********999984458889999987 PP

>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   7.8e-05      0.35       1      31 [.      18      48 ..      18      94 .. 0.90
   2 ?   -3.1   0.1       3.1   1.4e+04      61      78 ..     189     207 ..     176     211 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.8e-05
  Complex1_LYR_2  1 vlsLYrrllrelrelppelrslgdayvraef 31
                    v+sLYr+llr++ +     rs++++ vr++f
      CCE30332.1 18 VISLYRALLRSADKVATPERSALRHAVRSRF 48
                    79**********87788889999*99*9998 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.1
  Complex1_LYR_2  61 npglkmteeek.vrktanr 78 
                      p++++t+e+   +++a +
      CCE30332.1 189 EPTWQATQEDEwEDLMAAQ 207
                     4667777777755566654 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.6   0.00025       1.1      62      88 ..     269     295 ..     252     305 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00025
       SR-25  62 rssssssssssssssssssssssssdd 88 
                 + +s  + sssssss +sssss   d+
  CCE30332.1 269 HPASVPEASSSSSSSPPSSSSSRGGDE 295
                 344555555555555555555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3018.59
//
Query:       CCE30333.1  [L=594]
Description: uncharacterized protein CPUR_04181 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-06   28.6   1.7      2e-06   27.8   1.7    1.3  1  bZIP_1    bZIP transcription factor
  ------ inclusion threshold ------
       0.36   11.4   3.9       0.82   10.2   3.9    1.5  1  bZIP_Maf  bZIP Maf transcription factor
       0.66   10.1   3.9        1.2    9.2   3.9    1.4  1  bZIP_2    Basic region leucine zipper


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   1.7   3.3e-10     2e-06       8      46 ..      17      55 ..      13      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 3.3e-10
                XXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  8 krkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLk 46
                +r+ + R a+r++RqRK   i  Le+rvk+Le  N + +
  CCE30333.1 17 RRRTQIRLAQRAYRQRKDTTITTLEKRVKELERANDDIS 55
                899999*****************************9865 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.9   0.00014      0.82      32      71 ..      16      55 ..      11      60 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00014
    bZIP_Maf 32 rRRrlKNrgyakscrkrrlqqkeelekekeeleeelerlq 71
                 RRr++ r++++  r+r+ +   +lek  +ele++++   
  CCE30333.1 16 FRRRTQIRLAQRAYRQRKDTTITTLEKRVKELERANDDIS 55
                5********************************9988765 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.9   0.00021       1.2       8      42 ..      17      52 ..      14      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00021
                XXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  8 rRr.kNreAarrsRekkkakeeeleervkeLeeeNa 42
                rRr + r A r +R++k      le+rvkeLe+ N+
  CCE30333.1 17 RRRtQIRLAQRAYRQRKDTTITTLEKRVKELERAND 52
                5666889999*************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4170.55
//
Query:       CCE30334.1  [L=155]
Description: probable TIM17-mitochondrial inner membrane import translocase subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-32  110.0   8.1      1e-31  109.6   8.1    1.2  1  Tim17     Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   8.1   5.6e-36     1e-31       1     110 [.      12     119 ..      12     120 .. 0.96

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 5.6e-36
       Tim17   1 cvyktglsgvlGallGavfglvkgsrradtpapskerlreglrsvgkrgpslGknfgvvgglysgiecaleklRgkediwnsvaAGaltGall..ragp 97 
                 +++++g+++ +Ga++G++++ vkg+r+++    ++er+  ++ +v+ r+p lG+nfgv+ggl+s+++ca++++R+ked++n+++AG++tG+ l  r+g+
  CCE30334.1  12 IFNDFGGAFCMGAIGGTIWHGVKGFRNSP----YGERRIGAITAVKMRAPVLGGNFGVWGGLFSTFDCAVKGVRKKEDPYNAIIAGFFTGGSLafRGGF 106
                 5899***********************99....9********************************************************998456*** PP

       Tim17  98 qaaavgaiggaaf 110
                 +aa ++aig+a++
  CCE30334.1 107 KAARNNAIGCAVL 119
                 ***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1202.92
//
Query:       CCE30335.1  [L=893]
Description: related to PHO89-Na+/phosphate co-transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-101  339.9  15.7   1.7e-101  339.7  15.7    1.1  1  PHO4      Phosphate transporter family
  ------ inclusion threshold ------
      0.037   14.0   0.0      0.077   13.0   0.0    1.4  1  PX        PX domain
        2.7    8.3   8.8        2.4    8.5   0.5    2.8  2  UPF0444   Transmembrane protein C12orf23, UPF0444


Domain annotation for each model (and alignments):
>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.7  15.7  2.8e-105  1.7e-101       1     336 [.      24     597 ..      24     598 .. 0.97

  Alignments for each domain:
  == domain 1  score: 339.7 bits;  conditional E-value: 2.8e-105
        PHO4   1 iGanDvanafatsvgskaltlrqAvilaaifeflGavllGaeVaetirkgivdvelf..dpselmlgmlaallgaavwlllatvlglPvStthslvGal 97 
                 +GanDvana+atsv+s+++t+rqA++l+ +fe+lGa+++Ga+ a+ti++gi+ + +f  +p + +l++++a++ga +w+ ++t  +  vS+t sl+ ++
  CCE30335.1  24 NGANDVANAWATSVSSRSITYRQAMVLCLVFELLGALTVGARTASTIKNGIIPLAAFkdNPGVQLLAFTCAAAGASLWVQWCTRHSAHVSSTYSLISSI 122
                 8***************************************************9998899999999********************************** PP

        PHO4  98 iGaalaaeggeavkw.....kklvkivlswvlsPllggiiaallfllvkrlilvk.eklknalralpvlvlvtiailalsilfkge............. 177
                 +G+++a+ g+++v+w     k+l+ i++++ ++P ++++++a++f+l+k+++ v+ +++++a+++ p+++l+  ++++ls+++kg+             
  CCE30335.1 123 AGVGVATVGASGVQWgwnngKGLGAIFAGLGMAPAISAVFGAVIFMLIKTVVHVRkNPIRWAVWTSPFFFLIAGVVCTLSVVYKGSprlgldkkpawfi 221
                 ******9999*****8877769*****************************98777****************************999999999999999 PP

        PHO4 178 ................................................................................................... 177
                                                                                                                    
  CCE30335.1 222 vavtlgvgfglfvlsalffvpyvhakvlkkdytvtwkdivlgpllfkrqapadavnakvpnyavvqheddpsesetrndddgvfdaknlekagkpgqvi 320
                 999999999****************************************************************************************** PP

        PHO4 178 ................................................................................................... 177
                                                                                                                    
  CCE30335.1 321 petdsdnnnnnqklilaechqdgykrlvfearqrhhaklrrgngplawamrtlhanpmgagsiyekhnvvivckrlpamvvvallygmnydihsaqvgi 419
                 *************************************************************************************************** PP

        PHO4 178 ...............skkddeeteklfkflqvvsaalvsfahGanDvanaiGpllaalisiyk...a..sk.evplwvlllgglaialGlllgGkrvik 255
                                +kk+ +e+e l++f+q+++a+++sfahGanDv na+G++ aa++s+++   a  s+ +v lw +++++l i++G++++G++++k
  CCE30335.1 420 egtpdgrrmqrvydvAKKYPNEVEYLYSFVQIITACTASFAHGANDVGNAVGVW-AAMYSAWStgkAltSNsPVELWQIAVIALTICIGFITYGYNIMK 517
                 *******99888765559************************************.999999998863556668889*********************** PP

        PHO4 256 tvGekitkkltpsrGfaaelaaaltvllasklglPvStThvlvgavvGvGlakkresavnwklvrnivlaWvlTlpvsall 336
                  +G+kit  ++psrG ++e++aa+tvl++s++ lPvSt+ +++ga+vGvGl+++  +avnw+ v+ +v++W++T+p+++l+
  CCE30335.1 518 VMGNKITY-HSPSRGSSMEMGAAITVLVFSQYSLPVSTSMCITGATVGVGLCNGTFRAVNWQRVGLLVFSWFMTIPIAGLI 597
                 *******5.**********************************************************************97 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.3e-05     0.077      15      66 ..     640     698 ..     629     726 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
                 TTSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHT........TSTSTSSSTS CS
          PX  15 gskkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfp........rvkiPplPkk 66 
                  ++++ ++ +++++++  +++ +kRrY+++eeL+++ +++          + ++P+ P+ 
  CCE30335.1 640 APRWEPTTKISITHRNL-IYQGLKRRYEELEELQDRAREHAApdlefyfdAGIMPSTPPT 698
                 578899*********96.****************99877776677666666677777665 PP

>> UPF0444  Transmembrane protein C12orf23, UPF0444
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   2.3     0.028   1.7e+02      18      61 ..      88     132 ..      84     153 .. 0.77
   2 ?    8.5   0.5    0.0004       2.4      26      66 ..     536     575 ..     529     581 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.028
     UPF0444  18 lfsvtkGavGatvgGvawvGgksLeltksa..vtavpevGvglvkg 61 
                 l++ t  a Ga++  v w   +s +++ ++  + +++ vGv+ v +
  CCE30335.1  88 LLAFTCAAAGASLW-VQWCTRHSAHVSSTYslISSIAGVGVATVGA 132
                 66788899999999.****999999988772245577777766654 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0004
     UPF0444  26 vGatvgGvawvGgksLeltksavtavpevGvglvkgsvsav 66 
                 +Ga++  v+     sL +++s+ ++ ++vGvgl  g++ av
  CCE30335.1 536 MGAAIT-VLVFSQYSLPVSTSMCITGATVGVGLCNGTFRAV 575
                 689998.9999999**********************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 6222.41
//
Query:       CCE30336.1  [L=453]
Description: uncharacterized protein CPUR_04184 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.5    7.2   5.2        1.8    7.7   0.1    2.1  2  7tm_7     7tm Chemosensory receptor


Domain annotation for each model (and alignments):
>> 7tm_7  7tm Chemosensory receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0001       1.8      90     146 ..     128     187 ..     126     201 .. 0.82
   2 ?   -0.2   3.2     0.024   4.4e+02      83     184 ..     194     290 ..     191     293 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0001
       7tm_7  90 fqrrrlarllnellkldrrlkrlgnrrnkrrfnrllllllvliillllvtll...gylll 146
                 ++ r l++++ e  +l  +l + +++ n+r+  +l+++l+++ + ++ ++l+   +y+  
  CCE30336.1 128 RRGRTLREYYDENPHLLPQLPFTWHHGNRRWRLFLFAFLVFVDASAVPIALYygmHYAGG 187
                 578999************************************999998888865544444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.024
       7tm_7  83 villsllfqrrrlarllnellkldrrlkrlgnrrnkrrfnrllllllvliillllvtllgylllsqyftlvlllllyllpylvlqlllllyfllllliy 181
                 + ++++ +  + + ++  + ++l+++ ++          ++++ +l+++ +l+++v+    +   + ++ v+l +l+  + +  +l++l   + ++++y
  CCE30336.1 194 FAVVTTIWGGPTYLEFAIRTFRLMKKERFYRPLG--TESRWCFDMLTWASVLTITVVTA-LFVVGSAPHEVWLRVLCMPAPA--ILYCLGGMMTVMMLY 287
                 5666666666666666666677766666665555..34444444444444444433333.1333333333333333333333..355555555555555 PP

       7tm_7 182 ell 184
                 +++
  CCE30336.1 288 TVM 290
                 444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3451.05
//
Query:       CCE30337.1  [L=1108]
Description: related to myosin heavy chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0017   17.4  24.8     0.0017   17.4  24.8    5.1  5  DUF812         Protein of unknown function (DUF812)
     0.0057   16.9  17.0     0.0057   16.9  17.0    9.4 10  ATG16          Autophagy protein 16 (ATG16)
     0.0091   16.0   5.8     0.0091   16.0   5.8    8.7 11  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
  ------ inclusion threshold ------
        1.1    8.0 131.3      0.045   12.6  24.8    8.0  9  Spc7           Spc7 kinetochore protein
        1.6    8.2 112.6      0.088   12.4   5.2    6.7  5  Filament       Intermediate filament protein


Domain annotation for each model (and alignments):
>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   3.9   4.9e-05      0.17     207     372 ..     107     275 ..      17     284 .. 0.57
   2 !   17.4  24.8   4.6e-07    0.0017     309     489 ..     283     462 ..     275     472 .. 0.87
   3 ?   -0.8  24.5      0.14   5.1e+02     276     469 ..     482     671 ..     463     689 .. 0.76
   4 ?   -2.6  24.6      0.53   1.9e+03     266     479 ..     638     864 ..     627     873 .. 0.62
   5 ?   -5.9  21.4         5   1.8e+04     293     413 ..     896    1019 ..     861    1030 .. 0.41

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.9e-05
      DUF812 207 pslleenaaelaaeqeweeeaneqgl..asr.....lteeeykkrkkeklqkrlaeqlrkaalkseeaessasksksdlaellsefseksetdslktkg 298
                 +s+    ++  a+e+e++   ++++    s+        ++ +    +     +a++l +a  +++ a  s+  s+++++    + + +s++    t  
  CCE30337.1 107 TSTHRSRPSVSASEDERKPGLTSSASrrTSTlmsspSRMADKRTTAGTVGTAGAARKLASATSSTTGARTSTLGSRASMSGTPASTRPASTAT--RTPT 203
                 333334444444444444433333332222210001111222222222222233333333322222222333333333333333332222222..2333 PP

      DUF812 299 srfthaeklqftkeela.kkaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeeke 372
                 + +t +++l++     a   a+t  ++  +  +e+eel++++ + +++ie+l+++i++ e+ + ++ e+l +  +
  CCE30337.1 204 TSTTASKRLSMSGL--AsRPATTRSDA-SNGAKEIEELKTKLADGDAQIETLKSQIQASEAVVAELREQLANVPA 275
                 33333334433222..22344455554.67788999999999999999999999999999999999999887655 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 4.6e-07
      DUF812 309 ftkeelakkaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalvea 407
                 +++++++++ e   +lk++ e  l++l+++++++ +k+++ e+e+++ +s++  +e++   +++e e l ++++  +  le  ++ ++  ++Lq+++ +
  CCE30337.1 283 VQSAQASSADEAIANLKAEHESALANLESRLSDVIAKLQSAEAELDQHKSNLASAEDSRASTQSEIEVLRQSLERVQ--LESEEKVKAGEAALQSAMAD 379
                 44444457889999*******************************************************99987655..444567999*********** PP

      DUF812 408 saqrlvelakqWekhRvplieeyre.lkesksekekeaerkleeikklrekmkevaeelrqkeellkqLvaeleklpkdvsRs 489
                  a+++ el++   +  +  ++e+++ lk   ++ +++ ++  + i +l+++   +++el++k ++l   +a+le+ + d+ Rs
  CCE30337.1 380 HAAKMAELQTSLTEEHKSTVAELEAkLKADSDKDQSDGQSHETVISELKDSHASTVAELKSKIDELTASQAALEATSSDKARS 462
                 *********99877777777777751677777777899999999**************************************8 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.14
      DUF812 276 sdlaellsefseksetdslktkgsrfthaeklqftkeela...kkaeteeelkkkreeeleelqeqieeleski.eeleeeikklessikqveeeleee 370
                 + ++++  +  e++ t+ ++ + s  +++++l  tke ++    ka++ + + + r+ee+ +l+ + +e ++++ + +e+ei++l+ +    + + ee+
  CCE30337.1 482 RATNDVAGKSAESTGTQLSELHSSLAAREKELAATKEDMStllIKATESQSALADRDEEILKLKAMHDERMKNLsQDYENEIESLRGDA-FFKRKFEEL 579
                 3333344444455666666777778888888888888566777677777778899999********99877776267********9986.578899999 PP

      DUF812 371 keeneelekevklkkktlellpdaeeniekLqalveasaqrlvelakqWekhRvplieeyrelkesksekekeaerkleeikklrekmkevaeelrqke 469
                 + + +el+ + + + ++++ +  a  n ++L ++ve+ ++   e +k  ++ R+   ee+++ k+ +s  ++  er l++ik+ +++   v+     k+
  CCE30337.1 580 EGQHTELKTTSEEASRAHAEAL-AAVN-AELASAVETLKSLEAEHQKNLDALRASHAEELESAKTGASADKDANERLLDDIKAQHAEELAVI-----KK 671
                 9999999999999999999883.4444.789*******99999***************************************9887765554.....34 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 0.53
      DUF812 266 eae.ssasksksdlaellsefseksetds.lktkgsrfthaeklqftke.............ela..kkaeteeelkkkreeeleelqeqieeleskie 347
                 e++  +as +k+  + ll++++ +++++  + +k+s+   ++      e             +    ++ae+   ++++  e l+++ +   +++++++
  CCE30337.1 638 ESAkTGASADKDANERLLDDIKAQHAEELaVIKKESESVLSK------ElealgashhavleA-LksEHAEELGKMQAAHGEALSAVGSAGTDAHADAD 729
                 233355666666666666666433333320223333333333......133333333443321.12356666667777777788888888888777665 PP

      DUF812 348 elee...eikklessik..qveeeleeekeeneelekevklkkktlellpdaeeniekLqalveasaqrlvelakqWekhRvplieeyrelkeskseke 441
                 e+++   e+++++++++  q+++e+  e ++n  + k ++ ++k++++     + + +++a+  +++++l el +   k  +  i ey++ ++s +++ 
  CCE30337.1 730 EVAKlraELEAVREQLQkaQADSEVAVETAKNDLEGKHIDEMEKLIAM---NTNAMDRMKADGIQARRDLEELTAAHSKSIEDTISEYKSTSSSLEDRL 825
                 554411155554444441133444555555555555555555555555...577799999999999********************************* PP

      DUF812 442 keaerkleeikklrekmkevaeelrqk.eellkqLvael 479
                 +e +   +++++  +  +e+ ++++ + +++  qL +e 
  CCE30337.1 826 TEQRAVNADLEAAVRAAREALAKAQAEvDDMGHQLAQEK 864
                 ************999999999999876377888886553 PP

  == domain 5  score: -5.9 bits;  conditional E-value: 5
      DUF812  293 slktkgsrfthaeklqftkeelakkaeteeelkkkreeeleelqeqieeleskieeleee....ikklessikqveeeleeekeeneelekevklk. 384 
                   lk+ +++f  a + ++  +  + ++e+ +   ++ ++ l++++  ++ +++++e++++e     k+  ++ k ++++++++ ee + ++ke++ k 
  CCE30337.1  896 ALKQTQANFHAAGEETLRAK--EDEVESHKAQLAATQDTLATMKIDLDLAKKELEAHKAEshakYKTAMADYKDLNDSMTTLVEEANIKAKELEFKl 990 
                  11222222333322222111..123333333333334444444444444444444333331111233333444444555555555555555555443 PP

      DUF812  385 kktlellpdaeeniekLqalveasaqrlv 413 
                  ++t +l++d +  +e+L+a ++ ++++l 
  CCE30337.1  991 EQTTHLAEDNDRKVEELEAQLKVKEAELA 1019
                  45555555555555555555555555544 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   3.3       3.6   1.3e+04      50      50 ..      80      80 ..      10     147 .. 0.59
   2 !    7.5  13.8    0.0012       4.4      26     144 ..     163     282 ..     144     304 .. 0.69
   3 ?    3.5  16.9      0.02        71      67     154 ..     279     370 ..     272     386 .. 0.69
   4 ?   -2.7  12.1       1.6   5.8e+03      72     152 ..     373     451 ..     359     454 .. 0.48
   5 !   16.9  17.0   1.6e-06    0.0057      39     154 ..     436     549 ..     421     567 .. 0.78
   6 ?   -3.8  11.3       3.5   1.2e+04      76     142 ..     576     640 ..     552     664 .. 0.52
   7 ?   -9.1  27.4         5   1.8e+04      19     175 ..     600     753 ..     590     814 .. 0.77
   8 ?   -0.5  17.1      0.34   1.2e+03      32     152 ..     736     859 ..     728     871 .. 0.67
   9 ?   -6.7  27.6         5   1.8e+04      29     178 ..     866    1022 ..     859    1027 .. 0.64
  10 ?   -3.1   0.3       2.1   7.5e+03     113     149 ..    1057    1093 ..    1045    1097 .. 0.54

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.6
       ATG16 50 s 50
                 
  CCE30337.1 80 G 80
                0 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0012
       ATG16  26 rLldrtsaleaenaklekaaasaks...sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklked 121
                 +L+  ts+    + +   + as +    s++++++a+++++++++  ++++ +++ l+++ a++r++ ++  k+ +el+++l +  +++++l++++++ 
  CCE30337.1 163 KLASATSSTTGARTSTLGSRASMSGtpaSTRPASTATRTPTTSTT--ASKRLSMSGLASRPATTRSDASNGAKEIEELKTKLADGDAQIETLKSQIQAS 259
                 555555544443333333333333335555555555555555555..77788999******************************************** PP

       ATG16 122 eerlaeleaeraaletklkdree 144
                 e+ +ael+++ a++  + +  +e
  CCE30337.1 260 EAVVAELREQLANVPAAAATDAE 282
                 **********9987665544433 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.02
       ATG16  67 qsnskqsakiqsleqklaqlree....laelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvq 154
                 +++++qsa+ +s ++++a l++e    la+l  + ++   +l+++++el++ +++l + e + a+ ++e+++l++ l++ + e +ek k+ +
  CCE30337.1 279 TDAEVQSAQASSADEAIANLKAEhesaLANLESRLSDVIAKLQSAEAELDQHKSNLASAEDSRASTQSEIEVLRQSLERVQLESEEKVKAGE 370
                 34667888888888888888888444456666667777777777888888888888888888888888888888888888888888777655 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.6
       ATG16  72 qsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleekl....kedeerlaeleaeraaletklkdreeelrekekl 152
                  ++ +++ ++k+a+l++ l+e +k      + + el+++l+++ +k     ++ e+ + el++++a+   +lk++ +el   +++
  CCE30337.1 373 LQSAMADHAAKMAELQTSLTEEHK------STVAELEAKLKADSDKDqsdgQSHETVISELKDSHASTVAELKSKIDELTASQAA 451
                 233344444555555555555544......4555555555555444400004555556666666666666666666666655555 PP

  == domain 5  score: 16.9 bits;  conditional E-value: 1.6e-06
       ATG16  39 aklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraalet 137
                 a+l++++ + ++  s+++ + +++++a++++++  +ki++le+++a+lr+    + ks + + ++l el ++l+++e++l + +e +  l  + ++ + 
  CCE30337.1 436 AELKSKIDELTA--SQAALEATSSDKARSDQQAFLTKIAALESEIAELRATNDVAGKSAESTGTQLSELHSSLAAREKELAATKEDMSTLLIKATESQS 532
                 333333333333..333333444444444557999**************************************************************** PP

       ATG16 138 klkdreeelrekeklvq 154
                 +l+dr+ee+  ++++++
  CCE30337.1 533 ALADRDEEILKLKAMHD 549
                 ********998887765 PP

  == domain 6  score: -3.8 bits;  conditional E-value: 3.5
       ATG16  76 iqsleqklaqlreelaelyksrgelaqrll.elneelqkleeklkedeerlaeleaeraaletklkdr 142
                  ++le + ++l++  +e+ ++++e    ++ el +++++l++   e +++l++l+a++a   ++l++ 
  CCE30337.1 576 FEELEGQHTELKTTSEEASRAHAEALAAVNaELASAVETLKSLEAEHQKNLDALRASHA---EELESA 640
                 45555566666666666665555544444213444444444444444444444444433...333333 PP

  == domain 7  score: -9.1 bits;  conditional E-value: 5
       ATG16  19 eliqaynrLldrtsaleaenaklekaaasakssksskksakekeasasq.snskqsakiqsleqklaqlreelaelyksr.gelaqrllelneelqk.l 114
                 +l +   +L+  +++l++  a+++k+  + ++s +      e+++sa++  +++++a+   l++  aq+ eela   k+  + l++ l +l +++++ l
  CCE30337.1 600 ALAAVNAELASAVETLKSLEAEHQKNLDALRASHA------EELESAKTgASADKDANERLLDDIKAQHAEELAVIKKESeSVLSKELEALGASHHAvL 692
                 34444556777777777777777666666554222......2222222234566788889999999999999999999651568899999998877516 PP

       ATG16 115 eeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklr 175
                 e+  +e +e+l +++a + +   ++ +     +  +  v +l+ El+a + ql++a + ++
  CCE30337.1 693 EALKSEHAEELGKMQAAHGEALSAVGSAGTDAHADADEVAKLRAELEAVREQLQKAQADSE 753
                 6667778899*******99999999999999999999999********9999999877655 PP

  == domain 8  score: -0.5 bits;  conditional E-value: 0.34
       ATG16  32 saleaenaklekaaasaks..sksskksakekeasasq.....snskqsakiqsleqklaqlreelaelyksrge.laqrllelneelqkleeklkede 122
                 ++lea +++l+ka a+++   +++++  + +              + +++ +  +++  +q r +l+el  ++++  ++ + e +++ + le++l+e++
  CCE30337.1 736 AELEAVREQLQKAQADSEVavETAKNDLEGKH-----IdemekLIAMNTNAMDRMKADGIQARRDLEELTAAHSKsIEDTISEYKSTSSSLEDRLTEQR 829
                 34455555555444444444433333333333.....24444456667777888888888999999998887665168999999999999999999999 PP

       ATG16 123 erlaeleaeraaletklkdreeelrekekl 152
                 +  a+lea ++a +++l++ ++e+ +  + 
  CCE30337.1 830 AVNADLEAAVRAAREALAKAQAEVDDMGHQ 859
                 999999999999999999999998876554 PP

  == domain 9  score: -6.7 bits;  conditional E-value: 5
       ATG16   29 drtsaleaenaklekaaasaks......sksskksakekeasasq........snskqsakiqsleqklaqlreelaelyksrgelaqrllelneel 111 
                  dr+ al++  a++++++ ++++             a  k+++  +        +  +++++++s +++la++++ la++       ++ l + ++e 
  CCE30337.1  866 DRMTALAELDAAASARPDTSEAdalrkeL------AALKQTQ--AnfhaageeTLRAKEDEVESHKAQLAATQDTLATMKIDLDLAKKELEAHKAES 954 
                  77777777777775555555554443221......1111111..12122233334445566666666666666666666666666666666666666 PP

       ATG16  112 qkleeklkedeerla.eleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrkle 178 
                  +++ +++++d + l+ ++++ +++ + k k++e +l++ ++l +d    ++ L+ ql+  E++l + +
  CCE30337.1  955 HAKYKTAMADYKDLNdSMTTLVEEANIKAKELEFKLEQTTHLAEDNDRKVEELEAQLKVKEAELAEAK 1022
                  66666677776666524677788888899999999999999999999999999999999999988765 PP

  == domain 10  score: -3.1 bits;  conditional E-value: 2.1
       ATG16  113 kleeklkedeerlaeleaeraaletklkdreeelrek 149 
                  +++e     +++  +  ++ ++l ++++ ++ e+r++
  CCE30337.1 1057 DKDEDDADHSSSALASLTRARVLAQQIDVLDREMRDR 1093
                  4444444444444444455556666666666666554 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   5.8   2.5e-06    0.0091      21     120 ..     262     360 ..     260     378 .. 0.90
   2 ?   -0.9   0.1      0.43   1.5e+03      53      75 ..     372     394 ..     361     411 .. 0.45
   3 ?    3.1   4.0     0.026        93      48     107 ..     421     484 ..     380     488 .. 0.73
   4 ?    2.8   6.3      0.03   1.1e+02      22     105 ..     424     510 ..     420     543 .. 0.76
   5 ?    1.3   1.2     0.091   3.3e+02      22      91 ..     506     567 ..     491     589 .. 0.60
   6 ?    2.0   0.5     0.053   1.9e+02      41      87 ..     577     626 ..     570     645 .. 0.62
   7 ?   -0.5   0.0      0.31   1.1e+03      21      67 ..     654     701 ..     642     717 .. 0.73
   8 ?    1.1   0.6       0.1   3.7e+02      34      66 ..     732     764 ..     712     802 .. 0.62
   9 ?   -0.1   4.0      0.25   8.8e+02      31      62 ..     830     861 ..     777     935 .. 0.60
  10 ?   -2.0   1.1      0.94   3.4e+03      32      63 ..     926     956 ..     892     999 .. 0.52
  11 ?   -1.1   0.2      0.49   1.7e+03      41      80 ..     980    1019 ..     946    1025 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.5e-06
  Baculo_PEP_C  21 vLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstLnnllqalnn 117
                   v++ +r q++++ a+ at+ +    q ++ +e++ +l ae +++l++l ++L+d +++lq + + eL+  +s+l++   s + ++s ++ l q+l+ 
    CCE30337.1 262 VVAELREQLANVPAAAATDAEVQSAQASSADEAIANLKAEHESALANLESRLSDVIAKLQ-SAEAELDQHKSNLASAEDSRASTQSEIEVLRQSLER 357
                   7899*******************************************************9.999***********9999999999999888888887 PP

  Baculo_PEP_C 118 ldl 120
                   ++l
    CCE30337.1 358 VQL 360
                   654 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.43
  Baculo_PEP_C  53 dlksllaeldtrldtlltnLtda 75 
                   +l+s++a+ ++++++l t Lt+ 
    CCE30337.1 372 ALQSAMADHAAKMAELQTSLTEE 394
                   33444444444444444444332 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.026
  Baculo_PEP_C  48 nalsedlksllaeldtrldtlltnLtdalnalq....dtlrneLtnlnsiltnLlssvtNinst 107
                   +++ ++lk++ a+  ++l++ +++Lt++ +al+    d+ r++ ++  ++++ L s+++ + +t
    CCE30337.1 421 ETVISELKDSHASTVAELKSKIDELTASQAALEatssDKARSDQQAFLTKIAALESEIAELRAT 484
                   3455555555555555666666666666666666666999999999999999999999888766 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.03
  Baculo_PEP_C  22 LnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq...dtlrneLtnlnsiltnLlssvtNin 105
                   ++ ++   ++++a+l++ +d++  +  al++  ++   + ++++ t +++L++ +++l    d   +  +++ ++l++L ss++  +
    CCE30337.1 424 ISELKDSHASTVAELKSKIDELTASQAALEATSSDKARSDQQAFLTKIAALESEIAELRatnDVAGKSAESTGTQLSELHSSLAARE 510
                   455555566666788888887777777777777777777777888999999999999988878888888899999999999887655 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.091
  Baculo_PEP_C  22 LnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnln 91 
                   L+a          +la++++++ t L +  ++ +s+la+ d+++ +l +  ++ +++l+++ +ne+++l 
    CCE30337.1 506 LAAR-------EKELAATKEDMSTLLIKA-TESQSALADRDEEILKLKAMHDERMKNLSQDYENEIESLR 567
                   3333.......344555555555555543.3345555666666666666666677777777777776664 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.053
  Baculo_PEP_C  41 daietqLnalsedlksllaeldtrldtlltnLtdalnalq...dtlrneL 87 
                   +++e+q ++l++  ++++ + +++l+++ ++L +a+ +l+    + +++L
    CCE30337.1 577 EELEGQHTELKTTSEEASRAHAEALAAVNAELASAVETLKsleAEHQKNL 626
                   56666666666666666666666666666666666666664433333333 PP

  == domain 7  score: -0.5 bits;  conditional E-value: 0.31
  Baculo_PEP_C  21 vLnairlqnvqilaqlatlldai.etqLnalsedlksllaeldtrldt 67 
                   +L++i++q ++ la +++  +++  ++L+al ++ +++l++l+++ ++
    CCE30337.1 654 LLDDIKAQHAEELAVIKKESESVlSKELEALGASHHAVLEALKSEHAE 701
                   689999999998888888877652567888887777777777664444 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.1
  Baculo_PEP_C  34 aqlatlldaietqLnalsedlksllaeldtrld 66 
                   a+l + l+a+ +qL++ ++d + +++  +++l+
    CCE30337.1 732 AKLRAELEAVREQLQKAQADSEVAVETAKNDLE 764
                   445555555555555555555544444444333 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 0.25
  Baculo_PEP_C  31 qilaqlatlldaietqLnalsedlksllaeld 62 
                    + a+l++++ a  + L + ++++ ++  +l+
    CCE30337.1 830 AVNADLEAAVRAAREALAKAQAEVDDMGHQLA 861
                   23333333333333333333333333333333 PP

  == domain 10  score: -2.0 bits;  conditional E-value: 0.94
  Baculo_PEP_C  32 ilaqlatlldaietqLnalsedlksllaeldt 63 
                   + a+ + +l++++  L+  +++l++  ae ++
    CCE30337.1 926 L-AATQDTLATMKIDLDLAKKELEAHKAESHA 956
                   2.222222222222333333333333333333 PP

  == domain 11  score: -1.1 bits;  conditional E-value: 0.49
  Baculo_PEP_C   41 daietqLnalsedlksllaeldtrldtlltnLtdalnalq 80  
                    +  +++L+   e+ ++l ++ d+++++l ++L+ + ++l+
    CCE30337.1  980 NIKAKELEFKLEQTTHLAEDNDRKVEELEAQLKVKEAELA 1019
                    3334444444455566777777777777777777777776 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.0   0.00012      0.42     206     275 ..     233     302 ..     214     304 .. 0.77
   2 ?   12.6  24.8   1.3e-05     0.045     143     299 ..     290     448 ..     283     458 .. 0.87
   3 ?    7.1  13.0    0.0006       2.2     143     254 ..     437     552 ..     435     570 .. 0.80
   4 ?   -0.7  16.1      0.14   5.2e+02     172     276 ..     572     674 ..     552     680 .. 0.82
   5 ?   -3.1  14.7      0.79   2.8e+03     135     231 ..     653     762 ..     649     798 .. 0.60
   6 ?   -0.3  13.5      0.11   3.8e+02     163     264 ..     729     832 ..     688     838 .. 0.68
   7 ?    4.1   8.1    0.0049        17     153     238 ..     794     876 ..     771     887 .. 0.64
   8 ?    7.4   9.4   0.00048       1.7     174     243 ..     885     954 ..     872     970 .. 0.82
   9 ?    4.4  19.1    0.0041        15     142     266 ..     910    1034 ..     909    1037 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00012
        Spc7 206 eelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeev 275
                 +e++elk++++   +++++l++q++++e+ ++el+eq +++ ++ a   +v+ ++ ++ ++ + +lk+e+
  CCE30337.1 233 KEIEELKTKLADGDAQIETLKSQIQASEAVVAELREQLANVPAAAATDAEVQSAQASSADEAIANLKAEH 302
                 5677777777777777778888888888888888888888888888888888888888888888888776 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.3e-05
        Spc7 143 gleenlegleed.kelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieek.kkelaelqeqleeleekieel 239
                 +++e +++l+++ ++ L++ e+ l+++  +l++ +ael +   +l +a e+  ++++ e+e lr++l++++ e eek k+  a lq+ +++ ++k++el
  CCE30337.1 290 SADEAIANLKAEhESALANLESRLSDVIAKLQSAEAELDQHKSNLASA-EDSRASTQSEIEVLRQSLERVQLESEEKvKAGEAALQSAMADHAAKMAEL 387
                 5677888888772468*****************************995.556999*******************9984667889*************** PP

        Spc7 240 keqk.seleeeiaeaervleeckgwsesevsrlkeevkaleeltgwkivslsgstleltyr 299
                 +++  +e+++ +ae e  l++  + ++s+ ++ ++  ++l++ +  ++ +l+++  elt  
  CCE30337.1 388 QTSLtEEHKSTVAELEAKLKADSDKDQSDGQSHETVISELKDSHASTVAELKSKIDELTAS 448
                 9876267999**************************************9999776666554 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0006
        Spc7 143 gleenlegleedkelLekqe.eeldellpeleeekaeleeeleklqe...aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekie 237
                 +l++++++l++ ++ Le+   +++ +  +++ ++ a+le+e+++l++    a + ++++ ++L el+++la+ ++e+++ k+++++l  + +e++++++
  CCE30337.1 437 ELKSKIDELTASQAALEATSsDKARSDQQAFLTKIAALESEIAELRAtndVAGKSAESTGTQLSELHSSLAAREKELAATKEDMSTLLIKATESQSALA 535
                 678899999999999987651567888889999*************9666555667789999*************************999999999999 PP

        Spc7 238 elkeqkseleeeiaeae 254
                 + +e++ +l++   e  
  CCE30337.1 536 DRDEEILKLKAMHDERM 552
                 99999988887665433 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.14
        Spc7 172 leeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleelee.kieelkeqkseleeeiaeaervleeckgwsesevs 269
                 ++++++ele ++++l++ +ee +    e L+++  ela++ ++++      ae q++l++l++   eel++ k+ + ++  + er+l+  k   ++e+ 
  CCE30337.1 572 FKRKFEELEGQHTELKTTSEEASRAHAEALAAVNAELASAVETLK---SLEAEHQKNLDALRAsHAEELESAKTGASADKDANERLLDDIKAQHAEELA 667
                 578999***************999*************99988887...566667777777765146789999999999999999999999999999999 PP

        Spc7 270 rlkeevk 276
                  +k+e +
  CCE30337.1 668 VIKKESE 674
                 9988766 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 0.79
        Spc7 135 qllegLkegleenlegleedke.lLekqeeel.dellpeleeekaeleeeleklqeaaeeles..........idkeeLeelreelaelkaeieekkke 221
                 +ll+++k +  e+l+ +++++e +L+k+ e l  +    le+ k+e  eel k+q+a+ e  s           d +e+++lr el+++ +++++ +++
  CCE30337.1 653 RLLDDIKAQHAEELAVIKKESEsVLSKELEALgASHHAVLEALKSEHAEELGKMQAAHGEALSavgsagtdahADADEVAKLRAELEAVREQLQKAQAD 751
                 578888888888888887665426777777774445555566666777777777774433333344455555677777777777777777777755554 PP

        Spc7 222 la.elqeqlee 231
                  +  +++ +++
  CCE30337.1 752 SEvAVETAKND 762
                 33122233333 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.11
        Spc7 163 eeldellpeleeekaeleeeleklqe.....aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleek.ieelkeqkseleeeiaeaer 255
                 +e+     +l++e ++++e+l+k q+      ++  ++++ + + e+ + +a + + +++ k++  + +++leel+++  +++++ +se+++  ++ e+
  CCE30337.1 729 DEVA----KLRAELEAVREQLQKAQAdsevaVETAKNDLEGKHIDEMEKLIAMNTNAMDRMKADGIQARRDLEELTAAhSKSIEDTISEYKSTSSSLED 823
                 2333....3333333333333333333332122222336688899999999999999999999999999999999865167789999999999999999 PP

        Spc7 256 vleeckgws 264
                  l e++ ++
  CCE30337.1 824 RLTEQRAVN 832
                 999998765 PP

  == domain 7  score: 4.1 bits;  conditional E-value: 0.0049
        Spc7 153 edkelLek.qeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekiee 238
                 +d e+L++ + + +++   e+++  ++le++l+++++ +++l    ++ ++++re+la+++ae++    +la+ + ++ +  +++++
  CCE30337.1 794 RDLEELTAaHSKSIEDTISEYKSTSSSLEDRLTEQRAVNADL----EAAVRAAREALAKAQAEVDDMGHQLAQEKMDRMTALAELDA 876
                 444444431345566666666667777777777777755554....56888888888888888888888887776665555555554 PP

  == domain 8  score: 7.4 bits;  conditional E-value: 0.00048
        Spc7 174 eekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqk 243
                 +e ++l++el+ l++ ++++ +  +e L++  +e++++ka++++ ++ la+++ +l+  ++++e+ k++ 
  CCE30337.1 885 SEADALRKELAALKQTQANFHAAGEETLRAKEDEVESHKAQLAATQDTLATMKIDLDLAKKELEAHKAES 954
                 577899****************999****9999**********999999999999998888887766543 PP

  == domain 9  score: 4.4 bits;  conditional E-value: 0.0041
        Spc7  142 egleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLee.lreelaelkaeieekkkelaelqeqleeleekie 237 
                  e+l+ + +++e+ k++L++ ++ l +++ +l+  k+ele+  ++  ++++  +  d ++L+  +   ++e++ + +e++ +l++ +   e+ + k+e
  CCE30337.1  910 ETLRAKEDEVESHKAQLAATQDTLATMKIDLDLAKKELEAHKAESHAKYKT-AMADYKDLNDsMTTLVEEANIKAKELEFKLEQTTHLAEDNDRKVE 1005
                  567778889999999**********************99998888887765.67787888761555567899999999******************* PP

        Spc7  238 elkeqkseleeeiaeaervleeckgwses 266 
                  el++q +  e+e+aea+ +  ++kg s+s
  CCE30337.1 1006 ELEAQLKVKEAELAEAKAIAGKNKGLSAS 1034
                  ************************99876 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   5.2   2.4e-05     0.088     200     285 ..     224     309 ..     217     320 .. 0.86
   2 ?   -2.3  44.3      0.74   2.6e+03      36     289 ..     415     775 ..     397     778 .. 0.82
   3 ?    6.1  35.1     0.002       7.1      29     282 ..     578     864 ..     570     873 .. 0.64
   4 ?    5.5   3.5     0.003        11     225     284 ..     887     946 ..     876     950 .. 0.90
   5 ?   -0.2   7.4      0.17     6e+02     187     260 ..     945    1018 ..     941    1035 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
                 XXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 200 lqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreY 285
                  ++ a++  +++++ k+ +++   qi++l++++++ ++  a l++qla++ +  ++++e   ++ s+ +e++a++++e +  l + 
  CCE30337.1 224 TRSDASNGAKEIEELKTKLADGDAQIETLKSQIQASEAVVAELREQLANVPAAAATDAEVQSAQASSADEAIANLKAEHESALANL 309
                 5667788889999999999999999999999999999999999999999999999999999999*************999888765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.74
                 XXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX....................................... CS
    Filament  36 eleekksaevsklkelyekeleelrkqldeltkerarlql.eldnlreeledlrkkyeke....................................... 94 
                    + +++ +s+lk+   ++++el++++delt+ +a l++   d++r + + + +k++                                         
  CCE30337.1 415 SDGQSHETVISELKDSHASTVAELKSKIDELTASQAALEAtSSDKARSDQQAFLTKIAALeseiaelratndvagksaestgtqlselhsslaarekel 513
                 333444667788999999999999999999999999998625689999999999997665567999999999999999999999999999999999999 PP

                 .......................................XXXXXXXXXXXXXXX..........................XXXXXXXXXXXXXXXXXXX CS
    Filament  95 .......................................lnkreevEaelkalr..........................kdldeatlarvdLekkves 128
                                                         n+ ++ E+e+++lr                             +++ la v+ e  + s
  CCE30337.1 514 aatkedmstllikatesqsaladrdeeilklkamhdermKNLSQDYENEIESLRgdaffkrkfeelegqhtelkttseeaSRAHAEALAAVNAE--LAS 610
                 999999999999999999999999****999999999998999999999999999999999999999999999988888855666666655544..566 PP

                 XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-H.HHHHHHHHH CS
    Filament 129 LkeelaflkkvheeEvkelqkqvs.eqvlvevdaarkld.Lteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsak.eeitelrrq 224
                   e l+ l   h++ ++ l+++++ e  +  + a+   d  ++ l +i+aq+ e  +  ++e+e++ ++ le l  + +   eal+s + ee+ +++  
  CCE30337.1 611 AVETLKSLEAEHQKNLDALRASHAeELESAKTGASADKDaNERLLDDIKAQHAEELAVIKKESESVLSKELEALGASHHAVLEALKSEHaEELGKMQAA 709
                 67777889999************8555667777777777556799***************************999998888888876542778888888 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHH CS
    Filament 225 iqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireema.rqlreYqeLL 289
                   +  + + s    +++  +++a l ++lea +e+lq++ ++ e ++++++++++ ++++e ++L+
  CCE30337.1 710 HGEALSAVGSAGTDAHADADEVAKLRAELEAVREQLQKAQADSEVAVETAKNDLEgKHIDEMEKLI 775
                 8888888888888999999999*******************************9856778888775 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.002
                 XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX..........XXXXXXX CS
    Filament  29 eLeakieeleekksaevsklkelyekeleelrkqldeltkerarlqleldnlreel.edlrkkyekelnkreevEaelkalr..........kdldeat 116
                 eLe + +el+ +++++++   e+  +  +el +++++l++ +a  q +ld lr+++ e+l +      +++++ E+ l +++          k+  e  
  CCE30337.1 578 ELEGQHTELKTTSEEASRAHAEALAAVNAELASAVETLKSLEAEHQKNLDALRASHaEELESAKTGASADKDANERLLDDIKaqhaeelaviKKESESV 676
                 455555555554444444444444444445555555555555555556666665541344444444456666666666666665566666655555666 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXX CS
    Filament 117 larvdLekkvesLkeelaflkkvheeEvkelqkqvs....eqvlvevdaarkld....Lteilkeiraqyeelaeknreeaeewyk....skleelqea 203
                 l++ +Le+   s +  l+ lk+ h eE+ ++q+ +     +  +  +da    d    L + l+ +r+q  +  ++++  +e   +    + ++e+++ 
  CCE30337.1 677 LSK-ELEALGASHHAVLEALKSEHAEELGKMQAAHGealsAVGSAGTDAHADADevakLRAELEAVREQLQKAQADSEVAVETAKNdlegKHIDEMEKL 774
                 665.788888888999*******************8543222244567766666888877777777777766655555444433221111457788888 PP

                 XXXXXXXXXX-HHHHHHHHHHHHHHHH........HHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 204 aeknsealrsakeeitelrrqiqslei........eleslkkqkasleaqlae...leerleaeleklqeklseleeelaeireemarql 282
                 +++n++a+ ++k +  ++rr +++l++         ++++k++++sle++l+e   +++ lea+++ ++e+l++ ++e+ ++ +++a++ 
  CCE30337.1 775 IAMNTNAMDRMKADGIQARRDLEELTAahsksiedTISEYKSTSSSLEDRLTEqraVNADLEAAVRAAREALAKAQAEVDDMGHQLAQEK 864
                 8888888888888888888888877642222222259999***********993333567889999999999999999999999988765 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.003
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 225 iqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlre 284
                  ++l+ el++lk+++a+ +a+ +e+    e e+e+++++l++ ++ la+++ +++   +e
  CCE30337.1 887 ADALRKELAALKQTQANFHAAGEETLRAKEDEVESHKAQLAATQDTLATMKIDLDLAKKE 946
                 578999*********************************************998877666 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.17
                  XXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  187 eeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaelekl 260 
                  +e+e+   +  ++ ++a++  ++   s+ + ++e++ + ++le +le+  + ++   ++++ele++l+ + ++l
  CCE30337.1  945 KELEAHKAESHAKYKTAMADYKDLNDSMTTLVEEANIKAKELEFKLEQTTHLAEDNDRKVEELEAQLKVKEAEL 1018
                  55555555555666666666666666777777788888888888888888888888888888888776655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2645  (0.147526); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                        92  (0.00513135); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 3.22u 0.42s 00:00:03.64 Elapsed: 00:00:00.79
# Mc/sec: 4224.07
//
Query:       CCE30338.1  [L=682]
Description: uncharacterized protein CPUR_04186 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 5030.56
//
Query:       CCE30339.1  [L=461]
Description: related to phosphotyrosyl phosphatase activator PTPA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.4e-116  387.6   0.0   5.1e-116  387.3   0.0    1.0  1  PTPA      Phosphotyrosyl phosphate activator (PTPA) protein


Domain annotation for each model (and alignments):
>> PTPA  Phosphotyrosyl phosphate activator (PTPA) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.3   0.0  2.9e-120  5.1e-116       1     301 []      32     368 ..      32     368 .. 0.90

  Alignments for each domain:
  == domain 1  score: 387.3 bits;  conditional E-value: 2.9e-120
                 -B----SCHHHHHHCCCHHHHHHHHHHHHHHHHHT......................T-SS-HHHHHHHHHHHHHCCCTS---SS--SSS-THHHHHHH CS
        PTPA   1 pakrileeedlekfkkSkayadilefisrlneavkgkklee..............eeeasesvekllklLdeleelideippeeqpsRfGnkafrtwhd 85 
                 p+kri+e +++++f ++kayadi++f+ +ln+++++++++               + ++++s++ l++lL++le+li+++pp+++p+RfGn++fr+wh+
  CCE30339.1  32 PSKRINEGHHVQHFLTTKAYADICTFVLQLNHSLCPRTNSAspssppilfplipgSPTSTPSIQILQRLLSDLEALIEQAPPDPGPRRFGNVSFRKWHS 130
                 89***********************************9955566677778888877777999************************************* PP

                 HHHHHHHHHH.HHHS-GGGGGG.........HHHHHHHHHTTT-BTTTTEE-HHHHHHHHHHHHHHHHTT-STT......--HHHHHHHHHHHHHHHHH CS
        PTPA  86 rleeraeell.eellpeelkkael...ekaaieelkaYlkesfGnatrlDYGtGhElsFlafllcLeklgllkeee..eedeealvlkvfekYlelvrr 178
                  +ee+++++l ++ l ++  + +     ++a +e+++Yl+++fG+++rlDYGtGhElsF+afl+cL+kl+++ + +     e+++v +v+e+Yl++vr+
  CCE30339.1 131 LVEEKLDAFLlQDGLLKDALSITGgdgVTTAKDEVSSYLLGAFGSSQRLDYGTGHELSFIAFLGCLWKLRYFGDGApdGCIEREIVRNVIEPYLNVVRK 229
                 ******97551444444444333367777889****************************************877655569****************** PP

                 HHHHTT-EES--------SSS-SHHHHHHHHC.................SSS-G....GGGG-HHHHHHHTTT-HHHHHHHHHHHH--S-HHHH-HHHH CS
        PTPA 179 LqstYtLepAgshGvwGLDDyqflpflfGsaQ.................lvehkklkpksildaevveeyakeylYlsaiafinevKkgpfrehSpmLy 260
                 L++tYtLepAgshGvwGLDD++f+p++fGsaQ                  ++++  +p++i+++++ve+++++++Y+sai+fin+vKkgpf+ehSp+Ly
  CCE30339.1 230 LILTYTLEPAGSHGVWGLDDHSFVPYIFGSAQftrpisaetepmplegsAMGAP--RPSDIAKSAIVEDQRHTNMYFSAIGFINDVKKGPFWEHSPILY 326
                 ********************************7777776666666444333334..7****************************************** PP

                 HHHCC--.HHHHHHHHHHHHHHHTTT-HHHHTT--BBSSSBS CS
        PTPA 261 disavkt.WekvnkGlikmYkaevLskfpvvqhflfGsllpw 301
                 dis++k+ W k+nkG+ikm++aevLskfpvvqhf+fGsl++w
  CCE30339.1 327 DISGIKDgWGKINKGMIKMFNAEVLSKFPVVQHFPFGSLFSW 368
                 ****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3849.58
//
Query:       CCE30340.1  [L=127]
Description: uncharacterized protein CPUR_04188 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1153  (0.0643092); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 873.89
//
Query:       CCE30341.1  [L=256]
Description: uncharacterized protein CPUR_04189 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.024   15.1   3.5      0.035   14.5   3.5    1.2  1  Dsh_C     Segment polarity protein dishevelled (Dsh) C termin


Domain annotation for each model (and alignments):
>> Dsh_C  Segment polarity protein dishevelled (Dsh) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   3.5     2e-06     0.035      40     165 ..     120     241 ..     110     254 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2e-06
       Dsh_C  40 pYqyptphpyssqppayeessysygsgsagsqhsegsr.ssgsnrsegkakreaskeekerkaggsgsesesstrssv.srrerekaqserssaaaser 136
                  ++yp  h     p       y  ++ sag+  +  s+ ss s +s+++ +  +  +e+ +k ++++ +s   ++s + +  +  ++++ r+++++s+ 
  CCE30341.1 120 HFDYPPRHSTLKLP--ETLIVYDSAPRSAGATAAGKSNtSSNSFQSQAT-EFAEMMRERGAKDTSASDKSTILAHSHQnKAARIAESPQRREAKDTSTD 215
                 56677777733333..333789999999999876555413333444443.2333333443343333334444344433134566788888999999999 PP

       Dsh_C 137 skrssklrsksslsshaerssalsygppg 165
                 s++ s+ rs + +    +  +++s +p g
  CCE30341.1 216 SVTGSASRSVKLVD---AGPETQSIDPGG 241
                 99885554444333...233445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1868.24
//
Query:       CCE30342.1  [L=744]
Description: related to TOK1-voltage-gated, outward-rectifying K+ channel [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-33  113.8  24.9    8.2e-20   70.6   3.9    2.8  3  Ion_trans_2  Ion channel
    0.00069   18.9  10.5      0.004   16.4   0.4    2.6  2  Ion_trans    Ion transport protein
  ------ inclusion threshold ------
      0.051   13.7   0.3       0.28   11.3   0.3    2.4  1  DUF4229      Protein of unknown function (DUF4229)
      0.075   12.5   0.0        0.4   10.1   0.0    2.2  2  SieB         Super-infection exclusion protein B
        0.1   12.5   0.6       0.28   11.1   0.6    1.7  1  DUF2633      Protein of unknown function (DUF2633)


Domain annotation for each model (and alignments):
>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   1.2         5   1.8e+04       8      15 ..     180     187 ..     170     198 .. 0.46
   2 !   56.7   4.7   4.9e-19   1.8e-15       2      77 ..     224     296 ..     223     298 .. 0.95
   3 !   70.6   3.9   2.3e-23   8.2e-20       2      78 ..     385     461 ..     384     462 .. 0.93

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 5
                  HHHHHHHH CS
  Ion_trans_2   8 ifgaviys 15 
                  i++a++y+
   CCE30342.1 180 IWAAILYF 187
                  33333333 PP

  == domain 2  score: 56.7 bits;  conditional E-value: 4.9e-19
                  HHHHTCHHHHHHHHT....T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   2 vlllvlifgaviysleegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77 
                  ++l++l+fga+i+s     ++w +lda+Y++ vtl+T+G+Gd++p+t++ r++++ y+l+G++ ++l+++ + +++
   CCE30342.1 224 LFLSYLLFGALIFSH---IQDWHYLDAVYWANVTLFTVGFGDFAPTTNISRALVLPYALVGVISLGLVISSIRSMI 296
                  6899***********...8999************************************************999886 PP

  == domain 3  score: 70.6 bits;  conditional E-value: 2.3e-23
                  HHHHTCHHHHHHHHT....T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   2 vlllvlifgaviysleegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvlt 78 
                  +++l+l+ ++++ ++e  +++w+++d++Yf+fv+l TiGYGd +p+++ag++f +++ ll l+++++++++ g+ ++
   CCE30342.1 385 WIMLWLVGAVIFMHCERPYQQWTYFDSFYFCFVSLITIGYGDRTPHSNAGKAFFVFWSLLALPTMTVLISNAGDTVV 461
                  578899999999999888****************************************************9998875 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   3.4    0.0012       4.5     178     233 ..     236     292 ..     137     303 .. 0.76
   2 !   16.4   0.4   1.1e-06     0.004     137     240 ..     381     463 ..     348     468 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0012
                 S.......HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 178 n.......fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliavi 233
                         +++a++w+ ++++t+g+gd  ++t  ++       +v+ + l++++ l l+i  i
  CCE30342.1 236 FshiqdwhYLDAVYWANVTLFTVGFGDFAPTTNISR------ALVLPYALVGVISLGLVISSI 292
                 0334444499**************************......888888888888877777666 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 137 llvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviad 235
                 +  v+++  l+g  +f+ + r           p ++++   ++f+++++ f+++ t+g+gd +++   +k       f +f  l ++ ++ +li +  d
  CCE30342.1 381 SGSVWIMLWLVGAVIFMHCER-----------P-YQQW---TYFDSFYFCFVSLITIGYGDRTPHSNAGK------AFFVFWSLLALPTMTVLISNAGD 458
                 444555555555555533333...........3.3333...477777777888888**************......88888888889999999988888 PP

                 HHHHH CS
   Ion_trans 236 nfqel 240
                 ++ ++
  CCE30342.1 459 TVVKF 463
                 87665 PP

>> DUF4229  Protein of unknown function (DUF4229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   7.7e-05      0.28      22      68 .]     270     315 ..     263     315 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.7e-05
     DUF4229  22 arliglpvpllvaallAlvvalplSmvllkklRdrataqvaerderR 68 
                  r+++lp  l+ ++ l+lv++ + Sm+ l + R+r+ a+++e+  rR
  CCE30342.1 270 SRALVLPYALVGVISLGLVISSIRSMI-LERGRRRLDARMEEKNRRR 315
                 56778899999**************97.6899**********99998 PP

>> SieB  Super-infection exclusion protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00011       0.4      37      81 ..     279     323 ..     276     335 .. 0.88
   2 ?   -2.0   0.1      0.61   2.2e+03      50      75 ..     499     524 ..     494     525 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
        SieB  37 lvflisiayllaqvvskllaeikekikkkreqkkvekklknLtee 81 
                 lv +is++++++++ s +l+  +++++ ++e+k++++ ++++t++
  CCE30342.1 279 LVGVISLGLVISSIRSMILERGRRRLDARMEEKNRRRIIRTMTKT 323
                 5779***************************************85 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.61
        SieB  50 vvskllaeikekikkkreqkkvekkl 75 
                 ++      i+e+ k+kr++k++ +++
  CCE30342.1 499 MFRNATNAIREREKQKRQIKRTTSMI 524
                 55566677888888888888887775 PP

>> DUF2633  Protein of unknown function (DUF2633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   7.8e-05      0.28       8      35 ..     218     244 ..     214     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.8e-05
     DUF2633   8 rlTrivLliSFLflFGRllYsaigawsH 35 
                  + + +L++S+L lFG l++s i  w+ 
  CCE30342.1 218 LMLQTILFLSYL-LFGALIFSHIQDWHY 244
                 57889******8.69***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5166.89
//
Query:       CCE30343.1  [L=1522]
Description: probable MOT2-transcriptional repressor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-08   33.3   0.0    1.5e-07   31.2   0.0    2.2  2  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
     0.0044   16.4   0.5     0.0044   16.4   0.5    3.9  4  Rtf2         Rtf2 RING-finger
  ------ inclusion threshold ------
       0.02   14.5   0.0      0.041   13.5   0.0    1.4  1  SET_assoc    Histone lysine methyltransferase SET associated
      0.083   12.9   0.0       0.21   11.6   0.0    1.7  1  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   3.3e-11   1.5e-07       1      70 []      74     152 ..      74     152 .. 0.90
   2 ?   -2.7   0.0       1.2   5.4e+03      19      50 ..     654     688 ..     653     695 .. 0.69

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 3.3e-11
                 EEEESETTTSSHHHHH......HHHHTTSCEEEEEEEEE..TTTSEEEEE.EEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLk......elFskfGpiksiklvrd..etgkskgfa.fVeFeskedAekAlealngkklggrelk 70 
                 +++++L+p+v e+eL       e+F+++G i++i++++    +g+++  + +V+Fe++++A k+++a++g + g+r+lk
  CCE30343.1  74 VYITGLAPTVREDELLktlrrpEFFGQYGTIQKISISNRksPDGQHHSLGiYVTFEKPDEALKCIQAVHGSQNGDRVLK 152
                 79*************844555569**************99*88888888868********************9999886 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
                 HHTTSCEEEEEEEEE...TTTSEEEEEEEEESSHH CS
       RRM_1  19 FskfGpiksiklvrd...etgkskgfafVeFeske 50 
                 F++fG+ ++ k  +    +t +s g + V+ ++++
  CCE30343.1 654 FQDFGSKQKRKGKKHrhaNTSSSGGSGLVDLADPS 688
                 556666554444444557999999***99988876 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.5   9.7e-07    0.0044     152     211 ..       4      63 ..       2     112 .. 0.87
   2 ?   -3.6   1.9       1.3   5.6e+03     201     243 ..     300     334 ..     278     349 .. 0.40
   3 ?   -5.7  10.8         4   1.8e+04     187     247 ..    1047    1107 ..    1037    1124 .. 0.52
   4 ?   -6.8  23.0         4   1.8e+04     185     241 ..    1130    1181 ..    1110    1201 .. 0.41

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 9.7e-07
        Rtf2 152 vClvCgkeykeedviplnptkeelellkarleeekakkkkkkkakkkkkakakgskaeae 211
                  C+ C  +y+e+ +    ++kee+++ +a+++++++k+ ++k +k+ +k +++ ++ ++ 
  CCE30343.1   4 LCPACRRPYDEKTIEYKVMSKEEMAEFRANIHKNQKKRAQEKRQKELQKRETERENRKNL 63 
                 5*************9999*****************9999999999988887776665554 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.3
        Rtf2 201 akakgskaeaeaaskssseasesskagkkkekkkekkkrslae 243
                 ++a+ ++ ea++a++       + k+ ++ ++ ++++ +++++
  CCE30343.1 300 QDAADDA-EASSAMS-------KGKQVQQPTAPASSEFKKADP 334
                 2111111.1111111.......112222222222222222222 PP

  == domain 3  score: -5.7 bits;  conditional E-value: 4
        Rtf2  187 akkkkkkkakkkkkakakgskaeaeaaskssseasesskagkkkekkkekkkrslaeknek 247 
                   k++++k++k+  k+++k  +++ ++++++++     +k++kk++ +k+ ++rs  +++++
  CCE30343.1 1047 TKSQQRKQRKEVLKQETKVIAETLKVDPEEHAPVIGRKKKQKKEKPTKSTSARSNMSDSAT 1107
                  4455555556666666666666666655544444333333333333333334433333333 PP

  == domain 4  score: -6.8 bits;  conditional E-value: 4
        Rtf2  185 ekakkkkkkkakkkkkakakgskaeaeaaskssseasesskagkkkekkkekkkrsl 241 
                  +++ +k+kk+ak+k+k+k+k+s++eae + +    +++++++gk+ +k++ k++ ++
  CCE30343.1 1130 RAKTAKEKKAAKAKSKEKDKESEKEAETERE----KEKGKEKGKERAKETGKSR-DM 1181
                  2222233333333333322222222222222....2122222222222222222.22 PP

>> SET_assoc  Histone lysine methyltransferase SET associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.2e-06     0.041      32      57 ..     120     145 ..     118     153 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.2e-06
   SET_assoc  32 dktGyYivFndskeAerCfraedgtk 57 
                 +  G+Y++F++  eA +C +a++g++
  CCE30343.1 120 HSLGIYVTFEKPDEALKCIQAVHGSQ 145
                 788*******************9986 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.7e-05      0.21      16      51 ..      91     136 ..      74     138 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.7e-05
  Nup35_RRM_2  16 lVle..hFasfGeIvkhyvp........kevsvmyvkfesekdaek 51 
                    ++  +F ++G I k++++          +  +yv+fe++++a k
   CCE30343.1  91 TLRRpeFFGQYGTIQKISISnrkspdgqHHSLGIYVTFEKPDEALK 136
                  334478*******************987667779*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2127  (0.118635); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                       166  (0.00925874); expected 17.9 (0.001)
Passed Fwd filter:                        68  (0.00379274); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.83u 0.35s 00:00:02.18 Elapsed: 00:00:00.58
# Mc/sec: 7892.23
//
Query:       CCE30344.1  [L=286]
Description: probable NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-45  154.6   0.0    2.5e-45  154.0   0.0    1.2  1  Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd s


Domain annotation for each model (and alignments):
>> Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0   0.0   1.4e-49   2.5e-45       2     121 ..     103     223 ..     102     224 .. 0.97

  Alignments for each domain:
  == domain 1  score: 154.0 bits;  conditional E-value: 1.4e-49
                     E--HHHHHHHHHHHHH...TT--EEEEEEEEETT..SSSEEEEEEEE--S-.-EEEEEE....-S-BEE--TTT-STHHHHHHHHHHHSHHBCTT CS
  Complex1_30kDa   2 vvepedllevakflkdeeelgfdvlsdltavDek..eerfevvyhllsleknerirvkvevdeeepevpSvtdlfpgadwyEREayDmfGivfeg 94 
                     +++p+ +++v +flk +++ +f+++s++ta D++   +rfevvy+lls+++n rirvk+++de +p vpS+t+l+ ga+wyERE+yD+fG+ f+g
      CCE30344.1 103 YISPSGVIPVFTFLKYNTAAEFTQVSTVTAADYPtrAKRFEVVYNLLSVRHNSRIRVKTYADEASP-VPSITPLYDGANWYEREVYDLFGVFFTG 196
                     789999**************************9999***********************9988888.**************************** PP

                     SSTSS-SSSSTTSSS-TTSTTS----- CS
  Complex1_30kDa  95 hpdlrrillpedfeghPLRkdfplsge 121
                     hpdlrri+++++feghPLRkdfpl+g+
      CCE30344.1 197 HPDLRRIMTDYGFEGHPLRKDFPLTGY 223
                     ************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 1875.79
//
Query:       CCE30345.1  [L=837]
Description: uncharacterized protein CPUR_04193 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-29   99.8   1.0    1.1e-28   98.7   1.0    1.6  1  Zds_C     Activator of mitotic machinery Cdc14 phosphatase ac
  ------ inclusion threshold ------
        3.9    7.1  15.6        6.1    6.4   0.2    2.5  2  MRP-S31   Mitochondrial 28S ribosomal protein S31


Domain annotation for each model (and alignments):
>> Zds_C  Activator of mitotic machinery Cdc14 phosphatase activation C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   1.0   1.2e-32   1.1e-28       1      52 []     663     714 ..     663     714 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 1.2e-32
       Zds_C   1 vpdvvmydtRfpihvERaiYRlsHlKLanprRpLreQVLlSNfMYsYLnlvn 52 
                 +pdv++++tRfp+  ERaiYR++H+KLan+rRpL +QVLlSNfMYsYL++v+
  CCE30345.1 663 QPDVDYNWTRFPLLEERAIYRMAHIKLANARRPLLSQVLLSNFMYSYLAIVQ 714
                 69************************************************97 PP

>> MRP-S31  Mitochondrial 28S ribosomal protein S31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   9.0    0.0038        34      32     129 ..     551     647 ..     540     660 .. 0.69
   2 ?    6.4   0.2   0.00068       6.1       5      78 ..     710     780 ..     707     788 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0038
     MRP-S31  32 ekkkkkekkkselqkatedaekekkkesleeelvaAasavassLpsdkkkteseLlakLrkheeekeaqkkaeekelslsniisdmkvdkeqekkell 129
                 + kkk+e+k+ +++   e +++  + +++++++ +   +  +sL  d+ ++ s Ll+  +++ + k+++kk+++ ++ +s+i  ++k   e+ek ++ 
  CCE30345.1 551 KDKKKEESKRAKAKALVERTSDTARLDVIQSSIEKTIAKGRESLVLDRDNIDSKLLEERKRDSHRKNESKKEKDGSI-FSSIFGGSKRREEKEKATKK 647
                 22233333333344445556666678899999999999********************9887777777766666655.79999998866666554443 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00068
     MRP-S31   5 lellksmkvevttkeklkkeklqkkkkekkkkkekkkselqkatedaekekkkesleeelvaAasavassLpsd 78 
                 l ++++m++++++ ++ ++++l++++++k+++++ + s++q+ +edae++   e+++ +  +Aa + a+s p d
  CCE30345.1 710 LAIVQAMHPQMNVPTSPQQKRLEEEARRKRQEQDYA-SRQQDDNEDAENS--LEQYNFDYHRAAVQYAESGPDD 780
                 578899999999988877777777666555555555.5888888888876..5789999999999988886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1486  (0.0828825); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 5542.99
//
Query:       CCE30346.1  [L=730]
Description: uncharacterized protein CPUR_04194 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-49  164.9   0.0    1.3e-48  164.2   0.0    1.3  1  DUF2433        Protein of unknown function (DUF2433)
    0.00075   20.1   0.0     0.0016   19.0   0.0    1.6  1  Metallophos    Calcineurin-like phosphoesterase
     0.0019   18.4   0.0     0.0084   16.3   0.0    2.0  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> DUF2433  Protein of unknown function (DUF2433)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   0.0   2.1e-52   1.3e-48       1     124 []     302     431 ..     302     431 .. 0.93

  Alignments for each domain:
  == domain 1  score: 164.2 bits;  conditional E-value: 2.1e-52
     DUF2433   1 YgssyNefsvnpsleayrsklakskakfaevwetvkkeveaaid..eaqrklLenalevvekiPtiak......eeakkneastskekeesafknlWnf 91 
                 YgssyNefsvnp+l++yr+kla+ska+f++vwetvk+eve ai   eaq++lL+nal++vek+P++a+      +    +++++  + +esafkn+Wnf
  CCE30346.1 302 YGSSYNEFSVNPTLDHYRGKLAASKASFNDVWETVKGEVEPAIAqnEAQQNLLRNALQIVEKMPSTAAggnpfgG--PVTGQAALGQVDESAFKNMWNF 398
                 9***************************************9998889*********************8877543..3445566899************ PP

     DUF2433  92 NLcDaaygslvldikegrigaelrsqGfnfayr 124
                 NL+Daa+g lvl+i++grig+e+r+qGfnf++r
  CCE30346.1 399 NLADAAFGYLVLEIQDGRIGTEMRAQGFNFSHR 431
                 *******************************98 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.7e-07    0.0016       1      64 [.      65     132 ..      65     234 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.7e-07
                  EEEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEEST..SSSSSHHHHHHHHHHHHHHHH...........T CS
  Metallophos   1 lrilvigDlHlalgggqlddllkllddllreekpdlvllaGD..lvdrgdlekellellaalvky...........p 64 
                  +r+l+i+D+      g+l++l++l +++    ++d ++++GD  ++d+++l+   ++ l+++ +y            
   CCE30346.1  65 IRVLCIADVR-----GNLRSLNELAKQA----RADHIIHTGDfgFYDDTSLDRIAEKTLKHVAQYsplipepvkkaI 132
                  59********.....**********999....99**********999998888555558777777666655444440 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.4e-06    0.0084       2      37 ..      66     112 ..      65     217 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.4e-06
  Metallophos_2   2 klaiiSDlHsnldaleavlealkevgvdaiihaGD..............l 37 
                    +++ i+D+++nl+ l++++++ +++  d+iih+GD               
     CCE30346.1  66 RVLCIADVRGNLRSLNELAKQ-ARA--DHIIHTGDfgfyddtsldriaeK 112
                    7899*****999999999888.455..9*******444444444443330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5243.09
//
Query:       CCE30347.1  [L=312]
Description: probable COQ5-ubiquinone biosynthesis,methyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-79  264.7   0.0    6.8e-79  264.5   0.0    1.0  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.8e-15   57.4   0.0    1.4e-14   54.6   0.0    2.1  2  Methyltransf_25  Methyltransferase domain
    2.9e-13   50.3   0.0    3.2e-12   46.9   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
    1.6e-12   47.5   0.0    2.2e-12   47.0   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    1.1e-10   42.1   0.0    1.8e-10   41.4   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    1.8e-08   34.4   0.0    2.8e-08   33.8   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.098   12.5   0.0       0.26   11.1   0.0    1.7  2  Methyltransf_8   Hypothetical methyltransferase


Domain annotation for each model (and alignments):
>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.5   0.0   2.7e-82   6.8e-79       4     233 .]      62     310 ..      58     310 .. 0.91

  Alignments for each domain:
  == domain 1  score: 264.5 bits;  conditional E-value: 2.7e-82
                      XXXXXXXXXXX-HHHHHHHHHHHHHTTTHHHHHH.HHHHH--S--TT.....EEEEES-TT-HHHHHHHHHHHHHH.....EEEEEES-HHHHH CS
  Ubie_methyltran   4 lkeekvkevfesvaskyDlmndvlslgihrlWkk.fveklvavkrga.....kvlDvagGtgDlafklsdsvgekg.....kvvvlDinenmLk 86 
                       k+++v+ vf+sva++yD+mnd +slgihrlWk+ fv  l+ + +       +vlDvagGtgD+af+++d+++++      ++++ Din++mL 
       CCE30347.1  62 EKQKRVAGVFSSVAESYDKMNDFMSLGIHRLWKDhFVSSLNPGATTPlgqpqRVLDVAGGTGDIAFRILDHANTRNgnpniHITISDINPDMLA 155
                      46778*****************************999988755432223444********************9998899999************ PP

                      HHHHHHHHHTSS...TEEEEE--TTT-T..TS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----.SHHHHHHHHHHHH.HH CS
  Ubie_methyltran  87 vgekklkeegki...nieflqanaeeLp..feddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskve.lpllsqayelyskevl 174
                      vg+++  +   +   ++ fl anae Lp   +d+s D++tvsfG+rn+++++ aL+ea+rvlkpGG + +lefskv   pl++  y+ +s++ +
       CCE30347.1 156 VGQQRSLDLPASyqsSLSFLEANAEVLPpqIKDNSLDLYTVSFGIRNFSNIPAALREAHRVLKPGGVFACLEFSKVDkYPLFNAVYKRWSYSAI 249
                      *****98865544679***********844579******************************************9626899999********* PP

                      HHHHHHHHS-HHHHHHHHHHHHHS--HHHHHHHHHHTTEEEE..EEEEEGGGTEEEEEEEE CS
  Ubie_methyltran 175 PvlGkllakdldsyryLvesirafPdqetlkeliedaGfksv..eyesltgGvvaihigvk 233
                      P++G+l+a d dsy+yLvesi +fP q+ ++++i  aGf+ +   ye+ltgG++aih+g+k
       CCE30347.1 250 PMIGQLVAGDRDSYQYLVESIDRFPSQDAFRDMILAAGFEVAgdGYEDLTGGIAAIHRGIK 310
                      ****************************************98446**************98 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   5.3e-18   1.4e-14       1      97 []     115     221 ..     115     221 .. 0.89
   2 ?    0.3   0.0      0.45   1.2e+03      47      94 ..     262     310 ..     250     311 .. 0.72

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 5.3e-18
                      EEEET-TTSHHHHHHHCTS....T..SSEEEEEESSHHHHHHHHHHHHHTTT....TEEEEESBCCGBS..SSTTTEEEEEEESTGGGSSHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl....g..kakvtgvDiseemleaareraeeegl....nvefvqgdaedlp..fedgsfDlvvssgalhhlsdedl 82 
                      vLd++ GtG+++++++++     g  + ++t  Di+++ml+  ++r  +  +    +++f++++ae lp   +d+s Dl ++s+++  +s  ++
       CCE30347.1 115 VLDVAGGTGDIAFRILDHAntrnGnpNIHITISDINPDMLAVGQQRSLDLPAsyqsSLSFLEANAEVLPpqIKDNSLDLYTVSFGIRNFS--NI 206
                      9***************99766652579*******************9884445577************95559**********9999988..89 PP

                      HHHHHHHHHHEEEEE CS
  Methyltransf_25  83 ekalkeiarvLkpgG 97 
                      ++al+e++rvLkpgG
       CCE30347.1 207 PAALREAHRVLKPGG 221
                      **************9 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.45
                      TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSH..HHHHHHHHHHHHHEE CS
  Methyltransf_25  47 nvefvqgdaedlpfedgsfDlvvssgalhhlsd..edlekalkeiarvLk 94 
                      + ++++ +++++p +d+  D+++++ ++++  d  edl   ++ i+r +k
       CCE30347.1 262 SYQYLVESIDRFPSQDAFRDMILAA-GFEVAGDgyEDLTGGIAAIHRGIK 310
                      56889999999*****999*99995.566543312566666666666666 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.3e-15   3.2e-12       1      96 []     116     225 ..     116     225 .. 0.90
   2 ?    1.0   0.0      0.27   6.8e+02      44      69 ..     262     287 ..     247     311 .. 0.74

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.3e-15
                      EEET-TTSHHHHHHH.....HTT...SEEEEEES-HHHHHHHHHHCCHHT-....EEEETTEECCCTS..S-TT-EEEEEEES-CCC-CCHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaeala.....krg...arvvgvDlskemlklakekaseegl....kvefvvadaeklp..fednsfDlvvssevlhhvedpeka 80 
                      Ldv+ GtG +a  +      ++g    +++  D+++ ml++ ++++ + +     +++f++a+ae lp  ++dns Dl ++s+ + ++ +  +a
       CCE30347.1 116 LDVAGGTGDIAFRILdhantRNGnpnIHITISDINPDMLAVGQQRSLDLPAsyqsSLSFLEANAEVLPpqIKDNSLDLYTVSFGIRNFSNIPAA 209
                      799999999888888566655559999************9999999998889999999********9668************************ PP

                      HHHHHHHEEEEEEEEE CS
  Methyltransf_11  81 lkeiaRvLkpgGllvi 96 
                      l+e++RvLkpgG++++
       CCE30347.1 210 LREAHRVLKPGGVFAC 225
                      *************975 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.27
                      EEEETTEECCCTSS-TT-EEEEEEES CS
  Methyltransf_11  44 kvefvvadaeklpfednsfDlvvsse 69 
                      + +++v+++ ++p +d+  D++++  
       CCE30347.1 262 SYQYLVESIDRFPSQDAFRDMILAAG 287
                      467999***************99876 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   8.5e-16   2.2e-12       5     120 ..     113     238 ..     109     270 .. 0.87

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 8.5e-16
  Methyltransf_31   5 lrvlDlGCGtGeltfelae.....elgpkaevvGiDiseeaielArenaqklgld...nveFeqgdieeleklledekfDlilsnevlnaladp 90 
                       rvlD++ GtG+++f++ +     + +p+++++  Di+++++ + ++++ +l  +    ++F ++++e l+ +++d++ Dl +    +  +++ 
       CCE30347.1 113 QRVLDVAGGTGDIAFRILDhantrNGNPNIHITISDINPDMLAVGQQRSLDLPASyqsSLSFLEANAEVLPPQIKDNSLDLYTVSFGIRNFSNI 206
                      68*****************999999999*******************999998877789************88********88887889***** PP

  Methyltransf_31  91 dkileeiervlkpggilliedprllaelp..a 120
                      +++l+e++rvlkpgg++++ +++  +++p   
       CCE30347.1 207 PAALREAHRVLKPGGVFACLEFSKVDKYPlfN 238
                      *********************99666666553 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   7.1e-14   1.8e-10       1      99 []     116     223 ..     116     223 .. 0.97

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 7.1e-14
  Methyltransf_12   1 LeiGcGtGsllrallekl......pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirev 85 
                      L++ +GtG++++++l++       p+i++t +Di+p++++  +++  +  +   + + + + +++ l+++   +s Dl ++s+ + ++ +i ++
       CCE30347.1 116 LDVAGGTGDIAFRILDHAntrngnPNIHITISDINPDMLAVGQQRSLDLPASYQSSLSFLEANAEVLPPQikdNSLDLYTVSFGIRNFSNIPAA 209
                      89*************************************9999999999999999999999999999988999********************* PP

  Methyltransf_12  86 ldnirklLkpgGrl 99 
                      l++++++LkpgG++
       CCE30347.1 210 LREAHRVLKPGGVF 223
                      ************86 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   1.1e-11   2.8e-08      20     162 ..     109     290 ..      82     291 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.1e-11
  Methyltransf_23  20 lraggrvLdiGcGtG.illevl....rengf...svtgvDlspeaveiae......kakkaqkdqfdeqeaae.....pqgkfdlIvlrevleh 94 
                      l +++rvLd++ GtG i  ++l     +ng    ++t  D++p + +  +       a+ + + +f e +a++     ++++ dl + ++++ +
       CCE30347.1 109 LGQPQRVLDVAGGTGdIAFRILdhanTRNGNpniHITISDINPDMLAVGQqrsldlPASYQSSLSFLEANAEVlppqiKDNSLDLYTVSFGIRN 202
                      45678**********8888888644433443446999****9998887766666664444444444333333366666777************* PP

  Methyltransf_23  95 vpdppellrqiatllkpgGylllseplasl......................kedrllldwlylvpagrhi.sffsarslkelleeaGlev 162
                      + + p++lr +++ lkpgG++ ++e+ + +                        + + ++++ylv+    i +f s ++++++  +aG+ev
       CCE30347.1 203 FSNIPAALREAHRVLKPGGVFACLEFSKVDkyplfnavykrwsysaipmigqLVAGDRDSYQYLVES---IdRFPSQDAFRDMILAAGFEV 290
                      *************************976657888887777777666666633233333335555544...448889999999999999997 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.26     118     159 ..     186     228 ..     155     242 .. 0.79
   2 ?   -2.7   0.0       1.7   4.3e+03     156     180 ..     266     290 ..     263     293 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
                     --TT-EEEEEEES---S.S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Methyltransf_8 118 ledesvdvavfclslmg.tnladflkeanrvlkvGGllkvaev 159
                     ++d+s d+  + + +    n+   l+ea+rvlk+GG++   e 
      CCE30347.1 186 IKDNSLDLYTVSFGIRNfSNIPAALREAHRVLKPGGVFACLEF 228
                     56888887766666653278999*************9987775 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
                     EEEEGGG-S-HHHHHHHHHCTTEEE CS
  Methyltransf_8 156 vaevksrfesvklfaraltklGfev 180
                     + e   rf+s + f   +   Gfev
      CCE30347.1 266 LVESIDRFPSQDAFRDMILAAGFEV 290
                     5566779999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2524.56
//
Query:       CCE30348.1  [L=450]
Description: related to pyruvate dehydrogenase (lipoamide) alpha chain precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-87  291.1   0.0    8.4e-87  290.9   0.0    1.1  1  E1_dh            Dehydrogenase E1 component
    4.4e-05   23.3   0.3      0.001   18.9   0.1    2.5  2  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
     0.0097   14.9   0.0      0.015   14.3   0.0    1.2  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
  ------ inclusion threshold ------
      0.044   13.0   0.0       0.22   10.7   0.0    1.9  2  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.9   0.0   1.9e-90   8.4e-87       2     298 ..      98     402 ..      97     404 .. 0.97

  Alignments for each domain:
  == domain 1  score: 290.9 bits;  conditional E-value: 1.9e-90
                 HHHHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TTSEEEESS--HHHHHHTT--HHHHHHHHTT-TTTSSGTT-..-E..BTT..BEEE CS
       E1_dh   2 klvllrrvedaldalykrkkrigfyhlsagqealkvgiaaalekeDliiteYReagvllarglsleeilaeltgkvkgkggsrh.elmyaekesrilgg 99 
                 + +l+  ++d ++ +++r++r++fy+ sag+ea+ vg+   l++eD +  +YRe+g++  rg++ +e++++l  ++++ g +r  +++y++k  +i ++
  CCE30348.1  98 RDMLYISIMDLIMFDAQRQGRLSFYMVSAGEEAVSVGSSSVLDPEDPVYCQYREQGFFKERGMTTKEFMSQLFANKNDPGRGRNmPVHYGSKRLNIHTI 196
                 6789999******************************************************************************************** PP

                 -SSTTTHHHHHHHHHHHHH......HHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEE CS
       E1_dh 100 ngivgaqvplvaGialaak......iegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygisTeaekasaskeladrargvgipglrV 192
                  +++++q p++ G+ +a k         k +va++++G+gAa++Gd+++a+n+aa+ ++pv+f+++NN+y+isT++  +++ + +a r+ g+gi  +rV
  CCE30348.1 197 ASTLATQIPQASGAGYALKiqklqdPSSKAKVAVCFFGEGAASEGDFHAAMNIAATRSCPVVFICRNNGYAISTPTLDQYRGDGIASRGIGYGIDTVRV 295
                 *******************77777767899********************************************************************* PP

                 ETTSHHHHHHHHHHHHHHHHT.TT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH CS
       E1_dh 193 dgnDplavyeAvkfAaerare.gkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelkeiekevrkeveeavkk 290
                 dgnD+ av+eAvk A+e a + g +p+lie++tYR+ +Hs+sDd+ +yr+r eve+++  ++pi+rl++ + +kg ++e ++ke ++++rke+   + +
  CCE30348.1 296 DGNDIWAVREAVKKAREMALQdGGKPVLIECMTYRVSHHSTSDDSFAYRARVEVEDWKRRDNPITRLRKWMEAKGCWDEAKEKEARDSLRKEILKGFSE 394
                 ******************9753889************************************************************************** PP

                 HHHS---- CS
       E1_dh 291 aeskkele 298
                 ae++k+++
  CCE30348.1 395 AEKEKKPA 402
                 ****9986 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.3e-07     0.001      24     153 .]     194     326 ..     180     326 .. 0.73
   2 ?   -2.9   0.0       1.2   5.4e+03     113     149 ..     362     402 ..     346     403 .. 0.55

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.3e-07
                   ETTTS-TTTHHHHHHHHHHH.......ST...TSEEEEEEEHHHHHHT.GGGHHHHHHTT-.SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS CS
  TPP_enzyme_C  24 sgglgtmGyglpaAiGakla.......kp...drevvaivGDGgflmi.lqelatavrrnl.pitvvvlnNegygmtggqqepfggkrksgpagkdl 108
                   +++ +t+  ++p A+Ga  a       +p    +  v++ G G+     +++ ++++  +  p+++++ nN++   t    + +g+           
    CCE30348.1 194 HTIASTLATQIPQASGAGYAlkiqklqDPsskAKVAVCFFGEGAASEGdFHAAMNIAATRScPVVFICRNNGYAISTPTLDQYRGD----------- 279
                   568999***********99445556664432147889*******998887666666655554999999888887555554444433........... PP

                   ----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHH.....CSSSEEEEEE CS
  TPP_enzyme_C 109 kpvdfaklaealGakgarvekadveeleealkeal.....ekkgpaliev 153
                       +a    ++G++ +rv+ +d+  ++ea+k+a+     + ++p+lie+
    CCE30348.1 280 ---GIASRGIGYGIDTVRVDGNDIWAVREAVKKARemalqDGGKPVLIEC 326
                   ...25566689999999999999999999999998888888889999986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
                   HHHHHHHTTSE.EE...EESSH.HHHHHHHHHHHHCSSSEE CS
  TPP_enzyme_C 113 faklaealGak.ga...rvekadveeleealkealekkgpa 149
                   + k +ea G+   a     +++  +e+ + + ea ++k+pa
    CCE30348.1 362 LRKWMEAKGCWdEAkekEARDSLRKEILKGFSEAEKEKKPA 402
                   55566666666444433222333455555555555666665 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.4e-06     0.015     146     243 ..     228     328 ..     200     347 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.4e-06
                      -EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEEGGGT-.-S-HHHHHHHTT-EEEEETTTT-HHHHHHHHHHHHH....-TT CS
  Transketolase_N 146 ytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGeteisf.tedvakrfeaygWhvievedgedveaikaaieeaka....ekd 234
                         ++ g+g   eG  + a+++a+t     ++ +  +n  +i   t  ++  + +a+r   yg ++++  dg+d+ a+++a+++a++    +  
       CCE30348.1 228 VAVCFFGEGAASEGDFHAAMNIAATRSC-PVVFICRNNGYAISTPTLDQYrGDGIASRGIGYGIDTVR-VDGNDIWAVREAVKKAREmalqDGG 319
                      45789******************99876.578889999999999886665156688999999999998.7899999999999999862222568 PP

                      S-EEEEEE- CS
  Transketolase_N 235 kPsliklrt 243
                      kP li++ t
       CCE30348.1 320 KPVLIECMT 328
                      *******98 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.9e-05      0.22     115     178 ..     202     271 ..     194     276 .. 0.77
   2 ?   -0.8   0.0      0.16     7e+02     245     272 ..     295     327 ..     289     328 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.9e-05
  DXP_synthase_N 115 tsisaalGlavardlkg.e.....kkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsiskn 178
                     t i +a G   a ++++ +      k +v+  G+ga + G  + a+n +++ +  ++ i  +N  +is++
      CCE30348.1 202 TQIPQASGAGYALKIQKlQdpsskAKVAVCFFGEGAASEGDFHAAMNIAATRSCPVVFICRNNGYAISTP 271
                     66667777666644444212222146678889********************************999875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.16
  DXP_synthase_N 245 idGhdleelikvleevkkl.....kgpvllhvv 272
                     +dG+d+ ++ +++++++++      +pvl+ ++
      CCE30348.1 295 VDGNDIWAVREAVKKAREMalqdgGKPVLIECM 327
                     8***************99844433457777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3187.91
//
Query:       CCE30349.1  [L=1878]
Description: related to rat ubiquitin ligase Nedd4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-71  241.6   0.0    2.1e-71  241.0   0.0    1.3  1  HECT      HECT-domain (ubiquitin-transferase)
    0.00052   20.0  10.1        3.4    7.9   0.1    6.8  7  Arm       Armadillo/beta-catenin-like repeat
    0.00091   19.3   0.8        3.4    8.2   0.0    4.1  3  HEAT      HEAT repeat
     0.0024   18.3   1.2        4.3    8.0   0.0    3.6  3  HEAT_EZ   HEAT-like repeat
  ------ inclusion threshold ------
      0.024   14.2   0.2       0.14   11.7   0.0    2.3  3  CLASP_N   CLASP N terminal
       0.05   14.0   0.9        3.7    8.0   0.0    3.8  4  HEAT_2    HEAT repeats
        0.1   12.2   2.6       0.93    9.0   0.1    3.4  3  MMS19_N   Dos2-interacting transcription regulator of RNA-Pol
       0.13   12.4   0.1       0.39   10.9   0.1    1.8  1  DUF2013   Protein of unknown function (DUF2013)


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.0   0.0   9.2e-75   2.1e-71       3     307 .]    1530    1878 .]    1528    1878 .] 0.90

  Alignments for each domain:
  == domain 1  score: 241.0 bits;  conditional E-value: 9.2e-75
                  HHHHHT-GGGSSE.......EESSTTSSSEEE-TTHHHHS.......................HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT.. CS
                  xxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
        HECT    3 lskelldpklglf.......eeesedsgtlypkpssseee...................llklfeflGkvlGkaiyeeilldlpfsraflkfllg.. 71  
                  +ske+ ++kl+l+       +            +++s +                     l+lf++lGk++++++++++++d++f+++f++      
  CCE30349.1 1530 VSKEFSKKKLKLWremdsvgQ-----------AEFVSGQFglfprplnqeelsaangerILHLFKMLGKFVARSMIDSRIIDIHFNPIFFRIGDAps 1615
                  678888888888843333331...........2222111133344555556788888887789***************************9855566 PP

                  .-.---TCHHHHH-HHHHHHHHHHH..HS-GGG............................GT-BSEEEEETTEEEEEESSTTGGGSB--TTTHHHH CS
                  .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   72 .eekitledleeidpelakslkellslesntee.........................vedlaLtFtipenagasatieLipnGanipVtnenkkeY 142 
                     k +l  ++ +dp la+slk ++++   ++e                         +edl+L+Ft+p   g+   ieL +nG++ +V+ en+++Y
  CCE30349.1 1616 tGIKPSLGAVKVVDPGLARSLKAIKKFALAKKEidedpnrsaaqkvadaesividnvrLEDLCLDFTLP---GYP-HIELEDNGSQKRVNIENVDRY 1708
                  633677889******************99998899**********************************...9**.9******************** PP

                  HHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS.--HHHHHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  143 iklyvnyllkksvekqleaflkGfsevipskalklfdaeelellisGedelidvedlrrnteykggynaesetiewlweilkefspeekrlfLqFvT 239 
                  ++++++++l ++v++q+eaf+ Gfs+v+p +al++f+++el +l+   de++++e+l + +++++g+n +s+ +++l++ +++fs   +r+fLqF+T
  CCE30349.1 1709 LEKVIDMTLGTGVRQQVEAFRTGFSQVFPYSALSAFTPDELVSLFGRVDEDWSLETLTDSIKADHGFNMDSRSVKNLLQTMSQFSLPHRREFLQFTT 1805
                  *********************************************88888*********************************************** PP

                  SSSS--TTCGGG-B--EEEEE-S......-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHH.H--XXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
        HECT  240 gssrlPlgGfaelhpkftierksk....edetrLPtahTCfnlLklpdYsskeilkekLltAieet.egFels 307 
                  gs++lP+gGf++l+p ft+++k +    +++++LP+++TC+n+LklpdY+s e++k +L  A++e+   F+ls
  CCE30349.1 1806 GSPKLPIGGFRSLTPMFTVVCKPSehpyTSDDYLPSVMTCVNYLKLPDYTSIETMKTQLFKAMKEGqGAFHLS 1878
                  *********************999999999************************************5559986 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.013        28      14      39 ..     197     223 ..     195     225 .. 0.94
   2 ?   -0.6   0.0      0.69   1.5e+03      13      40 ..     239     267 ..     238     268 .. 0.75
   3 ?    4.3   0.0     0.019        43       2      41 .]     268     307 ..     267     307 .. 0.92
   4 !    7.9   0.1    0.0015       3.4      13      37 ..     320     344 ..     315     347 .. 0.85
   5 ?    0.3   0.0      0.37   8.3e+02       5      24 ..     404     425 ..     400     429 .. 0.78
   6 ?   -1.6   0.1       1.4   3.2e+03      19      33 ..     549     563 ..     543     565 .. 0.86
   7 ?    1.2   0.0      0.18   4.1e+02       8      33 ..     877     902 ..     874     908 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.013
                 HHHHHHHTT.TSSHHHHHHHHHHHHHH CS
         Arm  14 vppLvrLLs.sedeevqeeAawALsNL 39 
                 v+ Lv+L++  e++ev   A+++L+NL
  CCE30349.1 197 VKELVALMNkEESPEVMLLACRCLANL 223
                 788***********************9 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.69
                 HHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm  13 avppLvrLLs.sedeevqeeAawALsNLa 40 
                 avp+L++ L      ++ e+A+++L  ++
  CCE30349.1 239 AVPVLCSKLLeISFIDLAEQALSTLEKIS 267
                 677777544449999999*****998777 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.019
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 se    +++ G++ + ++ L+   +++q+ A+++ +N ++
  CCE30349.1 268 SEYPSSIVREGGLTACLSYLDFFATSTQRTAVTTAANCCR 307
                 67778899*****************************997 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0015
                 HHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm  13 avppLvrLLssedeevqeeAawALs 37 
                 ++p+L++ L s d++v+e+A  ++s
  CCE30349.1 320 VMPILLNVLGSNDQRVVEQASLCVS 344
                 79******************77766 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.37
                 HHHHHHTTHHHHHHHHTT..TS CS
         Arm   5 kdavieaGavppLvrLLs..se 24 
                   ++ ++++v+ L ++L+  s+
  CCE30349.1 404 SAELFKLNVVETLYQMLTgvSP 425
                 567899***********97665 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 1.4
                 HHTTTSSHHHHHHHH CS
         Arm  19 rLLssedeevqeeAa 33 
                 ++Ls+ de ++ eA+
  CCE30349.1 549 KMLSNLDEAILSEAL 563
                 6788*********97 PP

  == domain 7  score: 1.2 bits;  conditional E-value: 0.18
                 HHHTTHHHHHHHHTTTSSHHHHHHHH CS
         Arm   8 vieaGavppLvrLLssedeevqeeAa 33 
                 +  +G v+ L++  s++de++ + A 
  CCE30349.1 877 LLASGLVQTLLDIFSNPDEQLARSAQ 902
                 5679***************9988775 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0051        11       6      30 ..     201     226 ..     196     227 .. 0.82
   2 !    8.2   0.0    0.0015       3.4       1      30 [.     320     349 ..     320     350 .. 0.94
   3 ?   -1.1   0.0       1.4   3.2e+03       8      26 ..     508     526 ..     506     546 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0051
                 HHHH.T-SSHHHHHHHHHHHHHHHHC CS
        HEAT   6 lkll.sDpspeVReaAakaLgalaev 30 
                 + l+ + +speV   A+++L++l+e 
  CCE30349.1 201 VALMnKEESPEVMLLACRCLANLMEA 226
                 55665679***************985 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0015
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 ++P+ll+ l +++ +V e A +++  ++e 
  CCE30349.1 320 VMPILLNVLGSNDQRVVEQASLCVSGIVES 349
                 69************************9986 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.4
                 HHT-SSHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLga 26 
                 ll+ + peVR+ A+  + +
  CCE30349.1 508 LLEGCKPEVRRFALIIFPT 526
                 5666778899888765554 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.3   5.1e+03      30      49 ..     153     172 ..     148     178 .. 0.83
   2 !    8.0   0.0    0.0019       4.3      28      55 .]     195     223 ..     180     223 .. 0.87
   3 !    7.1   0.0    0.0035       7.7       4      48 ..     295     339 ..     292     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.3
     HEAT_EZ  30 lpaLlalLnddsdeVRaaAa 49 
                 l++Ll+ L+ d+ +V+  A+
  CCE30349.1 153 LRELLNNLRQDDLSVQIIAL 172
                 78899**********99887 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0019
     HEAT_EZ  28 eilpaLlalLnddsd.eVRaaAagaLgnl 55 
                 + +++L+al+n +++ eV   A+++L+nl
  CCE30349.1 195 AFVKELVALMNKEESpEVMLLACRCLANL 223
                 57999*****775555**********997 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0035
     HEAT_EZ   4 RraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaA 48 
                 +r A+ + ++++ + p++  p+v +++p Ll+ L + +++V ++A
  CCE30349.1 295 QRTAVTTAANCCRNIPDDSFPVVRDVMPILLNVLGSNDQRVVEQA 339
                 67777777788889999999******************9996665 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.2e-05      0.14      67     129 ..     292     354 ..     266     363 .. 0.86
   2 ?   -1.9   0.0      0.88     2e+03      80     112 ..     508     541 ..     507     560 .. 0.75
   3 ?   -3.4   0.0       2.6   5.8e+03      91     127 ..     878     914 ..     868     922 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.2e-05
     CLASP_N  67 ttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfsp 129
                 t+   t++ +  ++++   ++  p+v+ ++p+Ll++lg++ +++ ++a+ +++ ++++ +++p
  CCE30349.1 292 TSTQRTAVTTAANCCRNIPDDSFPVVRDVMPILLNVLGSNDQRVVEQASLCVSGIVESFKYQP 354
                 6666777777788888888888899*********************************99987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.88
     CLASP_N  80 laiqlkeqldpmveillptLlkllgdtKki.isq 112
                 l++ +k+++  ++ i++ptL +  ++t ++ ++q
  CCE30349.1 508 LLEGCKPEVRRFALIIFPTLTDAFSSTVNLsVRQ 541
                 66778999999999*********99998872355 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.6
     CLASP_N  91 mveillptLlkllgdtKkiisqnanqalaallsnasf 127
                 ++  l++tLl+  ++  +  + +a+ ++  ++   s+
  CCE30349.1 878 LASGLVQTLLDIFSNPDEQLARSAQSTFLEIFMGYSL 914
                 5667889999999999999999999999888876664 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0017       3.7      13      63 ..     164     230 ..     153     249 .. 0.64
   2 ?    1.0   0.0      0.25   5.6e+02      12      82 ..     251     339 ..     240     343 .. 0.47
   3 ?    0.4   0.0      0.39   8.8e+02      31      53 ..     319     341 ..     290     363 .. 0.69
   4 ?   -1.1   0.1       1.2   2.6e+03      49      74 ..     841     867 ..     823     877 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0017
      HEAT_2  13 dpevrraairaLg.............rignpealpaLvell.ededpavRraaaeaLgaigd..pea 63 
                 d  v++ a+++L               + ++  ++ Lv l+ + e+p+v   a++ L+ + +  p++
  CCE30349.1 164 DLSVQIIALQELSeillvsnednlagHFSPDAFVKELVALMnKEESPEVMLLACRCLANLMEalPAS 230
                 55566666666665544433333333344446699******88999***********9885322554 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.25
      HEAT_2  12 pdpevrraairaLgrignp........ealpaLvellededpavRraaaeaLgai....gd......pealpaLkellddddddvvRea 82 
                 ++ +++ +a+ +L +i ++          l a++++l+   + ++r+a+++++ +     d       ++ p+L+  l + d +vv +a
  CCE30349.1 251 SFIDLAEQALSTLEKISSEypssivreGGLTACLSYLDFFATSTQRTAVTTAANCcrniPDdsfpvvRDVMPILLNVLGSNDQRVVEQA 339
                 55555556666666554443333333333555555555555555555555555442222111222234456666666655555555444 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.39
      HEAT_2  31 ealpaLvellededpavRraaae 53 
                 +++p+L+++l + d +v ++a  
  CCE30349.1 319 DVMPILLNVLGSNDQRVVEQASL 341
                 78999999998888888887765 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.2
      HEAT_2  49 raaaeaLgaig.dpealpaLkellddd 74 
                 + aa +Lg ++ d+e l+ L++++d+d
  CCE30349.1 841 KRAAASLGGVKkDKELLAKLARYFDTD 867
                 334445555542455556666555544 PP

>> MMS19_N  Dos2-interacting transcription regulator of RNA-Pol-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00041      0.93     108     157 ..     178     229 ..     152     239 .. 0.79
   2 ?    0.1   0.0      0.22   4.9e+02     209     244 ..     239     275 ..     229     282 .. 0.87
   3 ?   -1.0   0.1      0.47     1e+03     195     247 ..     509     562 ..     502     569 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00041
     MMS19_N 108 allekhrealkelge..dflegfvelvdgEkDPrnLllvfellkvllrefdl 157
                  ll +++++l  + +   f++ +v+l++ E  P+ +ll+++ l +l+++++ 
  CCE30349.1 178 ILLVSNEDNLAGHFSpdAFVKELVALMNKEESPEVMLLACRCLANLMEALPA 229
                 4445556777433334699***************************998854 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.22
     MMS19_N 209 alplllekLds.tsvsakldaLqtlaacveaygaeav 244
                 a+p+l+ kL + +  +  ++aL+tl ++ ++y  + v
  CCE30349.1 239 AVPVLCSKLLEiSFIDLAEQALSTLEKISSEYPSSIV 275
                 89*******999999*****************87766 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.47
     MMS19_N 195 LreclaasplfaplalplllekLds.tsvsakldaLqtlaacveaygaeavaeh 247
                 L++c     +fa  ++p l + ++s  + s+++ +L +  +++++ +++ ++e 
  CCE30349.1 509 LEGCKPEVRRFALIIFPTLTDAFSStVNLSVRQKVLMAQLKMLSNLDEAILSEA 562
                 6777777889***************44567899999888888888777766665 PP

>> DUF2013  Protein of unknown function (DUF2013)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00017      0.39      45      92 ..     194     243 ..     152     260 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
     DUF2013  45 ktfgenlilllNReedlvlqllilklLyllft..tsetaelfYtnDlkVL 92 
                   f+++l+ l+N+ee++ ++ll ++ L  l+     ++a+++Y n + VL
  CCE30349.1 194 DAFVKELVALMNKEESPEVMLLACRCLANLMEalPASVANVVYGNAVPVL 243
                 6799***************************966688999***9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1878 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1192  (0.0664845); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                        70  (0.00390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.73u 0.35s 00:00:02.08 Elapsed: 00:00:00.57
# Mc/sec: 9904.32
//
Query:       CCE30350.1  [L=1060]
Description: uncharacterized protein CPUR_04198 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1060 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2078  (0.115902); expected 358.6 (0.02)
Passed bias filter:                      750  (0.0418317); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.33u 0.37s 00:00:01.70 Elapsed: 00:00:00.52
# Mc/sec: 6169.39
//
Query:       CCE30351.1  [L=1392]
Description: related to SEC3-component of exocyst complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     2e-232  773.5   0.2   2.7e-232  773.1   0.2    1.1  1  Sec3_C          Exocyst complex component Sec3
    3.8e-28   97.4   0.0    7.2e-28   96.5   0.0    1.5  1  Sec3-PIP2_bind  Exocyst complex component SEC3 N-terminal PIP
  ------ inclusion threshold ------
        0.1   13.6   0.1       0.44   11.6   0.1    2.1  1  DUF2018         Domain of unknown function (DUF2018)
       0.11   12.9   2.3       0.14   12.5   0.0    2.3  3  Sec3_C_2        Sec3 exocyst complex subunit
       0.29    9.8   1.5       0.34    9.6   0.1    1.7  2  Vps52           Vps52 / Sac2 family


Domain annotation for each model (and alignments):
>> Sec3_C  Exocyst complex component Sec3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  773.1   0.2  7.5e-236  2.7e-232       3     700 .]     655    1376 ..     653    1376 .. 0.98

  Alignments for each domain:
  == domain 1  score: 773.1 bits;  conditional E-value: 7.5e-236
      Sec3_C    3 adeleerLsreLskleaan.ikrllesdkkveelkkdidkalkecdeldalltlysveLstlsedieyIEsqnngLQvksaNqklLykeLeellstv 98  
                  ++e++ +L+re+++++a++ ++r++e+d++v+++k++id a++ec+eld+lltlysveLstls+di+yIE+q++gLQv++aNqklL keLe+ll+t+
  CCE30351.1  655 TEEMKVDLEREINRAQAGGwLARFQEEDERVSAIKRGIDLAMTECEELDNLLTLYSVELSTLSDDIAYIEAQGQGLQVQTANQKLLRKELESLLETC 751 
                  7899********************************************************************************************* PP

      Sec3_C   99 slsesdleaLkeaelssanglealeealeaLfkAltaIdsdlk................dlesdlgemravkerrerYekvsssFlrrlveflekkf 179 
                  ++ + dleaL++a+l++  gl+++e+ l +LfkA+++Id++l+                d ++d+g+mr+v+e++e+Y ++s  F+rrl++f++++f
  CCE30351.1  752 AITSTDLEALRSAPLEDSRGLQEVETTLITLFKAMVKIDPTLGgaepvanaksaldqtpDFNTDYGNMRIVQEKKEMYLQESAHFMRRLIDFMARQF 848 
                  ************************************************************************************************* PP

      Sec3_C  180 ksaekelgkdldsatkkklslekhlevlnlLliYsgLilflKevdaekfeallqqYnasiskvYereikeffeslkkslkkssgseeseslssssse 276 
                  ++  +  +  l+ a +kk +++++   +++L++Ys+L+l++++vd +++++l+q+Y+++++++Y+  +++ ++ ++k+++k++g+e  e l+s +  
  CCE30351.1  849 DESSAGSRRSLEGALSKKGDSSHYDAGREMLWKYSPLMLYARDVDLQNWNRLIQIYQDKSHPLYKGHFQNVIALWRKNARKMTGEE-TELLFSFK-V 943 
                  99999999999999************************************************************************.78888885.5 PP

      Sec3_C  277 ekkteglalrksrkltlkssktganls........ekaaqkktsgrlkpdeafaevLdeleplilveQnFiidfFhlssletldfnefvkqsapser 365 
                  ek++ g a +++rk t+k+s+t+a++          +a ++ +++r  p+e+fa+v+d+l pl+++eQnFiidfFh+++le++df+++v++ ap++r
  CCE30351.1  944 EKQQDGVA-MAARKMTVKRSHTLARALrspladrgANADKSGSDSRSFPYEVFAGVMDDLSPLVEMEQNFIIDFFHATTLEQSDFADAVAATAPRDR 1039
                  66666566.**************998899999887777779999***************************************************** PP

      Sec3_C  366 rakdlsrsknvesdrelarkveklmeaifqflekelvnlvekvlkvdplqalgilvyleqkikeleesnqsflssvlqkllekvkslfkkfvdeqve 462 
                  +++dl++ + +e+dr+lar+v++ meaif+fl++el++l+e+v   dplq++g+l++le+k  ++++snq+fl+++lqkl+  +++ f+kfv+eq++
  CCE30351.1 1040 HGGDLKSYRLMEPDRDLARRVTRSMEAIFAFLQPELQRLMEWVIGQDPLQGVGVLAVLEKKLSDISQSNQDFLNTLLQKLHGLLEGRFSKFVEEQIK 1136
                  ************************************************************************************************* PP

      Sec3_C  463 sieetkvkvkkrkgvlpfvrnfpefvkavEsmlssaeralavrtlvdqaYeklieavfelLkreakeekaks...vadeeedkeklnrhvllleNmn 556 
                  +ieetkvk++krkgv++f+r fp f+ avE+m+s  + +la r+++d++Y+++ + +f++L+++a+e++a      +++ edke+ln+h+ll+eNmn
  CCE30351.1 1137 AIEETKVKINKRKGVISFFRVFPAFMAAVENMVSGLDPNLALRRMIDREYDRILKCMFDSLMVIARELPAGGvasATADLEDKEALNFHILLIENMN 1233
                  *********************************************************************9998887788****************** PP

      Sec3_C  557 hfleeLselknsevleelrdeakqlfdeelelYvdavlrrplgkLieFvegveellqt.kkaaeissqaaySkqalkkilskYtakeirkgieklyk 652 
                  hfle+ +     ev+ee++d+a ++++e++ +Y++av+rrplgkL++++e++e+++qt k+++ i++qa++ ++ ++kils+Y+ake+rkgie+l+k
  CCE30351.1 1234 HFLEDTDTRGL-EVVEEWKDQANTEYHEHMGMYLNAVMRRPLGKLLDYLENIEAQIQTgKSPTSIARQASNDRSIFNKILSNYDAKEVRKGIEALRK 1329
                  ***********.************************************************************************************* PP

      Sec3_C  653 rvekhfledadravleeeLlqkvwseleeefiskylrlekiiqkvYdg 700 
                  rvekhf +dad+++l+++L++kv  ++e++++++  r++k++++vY+g
  CCE30351.1 1330 RVEKHF-GDADDPALSRTLVAKVTADCEKFYLDVESRIGKVTTDVYGG 1376
                  ******.99999**********************************86 PP

>> Sec3-PIP2_bind  Exocyst complex component SEC3 N-terminal PIP2 binding PH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0     2e-31   7.2e-28       2      90 .]      76     170 ..      75     170 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 2e-31
  Sec3-PIP2_bind   2 kkprfLclsvtksgrkevrlhkvKensngssfsigktWkLkeLklvegrdpdk.........ddpeFdltfdkpykweaesskeknaFirsLvkl 87 
                     +k+r+++++v+ksgr  vrlhk+K+n ng+ fsigktW+L++L+++e+++  +         +d  F++t++kpy w+a++ kek++Fi+sL+k+
      CCE30351.1  76 EKQRVIIVAVRKSGR--VRLHKSKQNMNGT-FSIGKTWNLDDLSQIESFTGPHvsannrewgGDTGFLITLGKPYFWQAQTDKEKKFFIASLIKI 167
                     69***********99..************9.*******************9999********8899***************************** PP

  Sec3-PIP2_bind  88 ykk 90 
                     y k
      CCE30351.1 168 YGK 170
                     975 PP

>> DUF2018  Domain of unknown function (DUF2018)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00012      0.44      13      41 ..     732     760 ..     731     784 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                 HHCS-HHHHHHHHHHHHHHHHHHHHHHHH CS
     DUF2018  13 ifhAnknlvekeLekllerlaalelllee 41 
                 +++An++l +keLe lle  a+  + le 
  CCE30351.1 732 VQTANQKLLRKELESLLETCAITSTDLEA 760
                 789******************98876665 PP

>> Sec3_C_2  Sec3 exocyst complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.8e-05      0.14      43      85 ..     684     726 ..     662     727 .. 0.88
   2 ?   -4.1   0.0         5   1.8e+04      38      56 ..     735     753 ..     734     758 .. 0.80
   3 ?   -1.8   0.3       1.1     4e+03       2      39 ..    1099    1136 ..    1098    1148 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.8e-05
    Sec3_C_2  43 elkevkdilqdsilGCeslfstlnlyslelstvlndvinieqq 85 
                 ++  +k  ++ ++  Ce l   l lys+elst  +d+  ie q
  CCE30351.1 684 RVSAIKRGIDLAMTECEELDNLLTLYSVELSTLSDDIAYIEAQ 726
                 566778888888999**********************999988 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 5
    Sec3_C_2  38 aeekielkevkdilqdsil 56 
                 a++k+  ke+++ l+ +++
  CCE30351.1 735 ANQKLLRKELESLLETCAI 753
                 5688888999999999986 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.1
    Sec3_C_2    2 krlseldWseedaikdvlkelefsldeaiiesveelae 39  
                  k+ls++  s++d ++  l++l   l++ + + vee ++
  CCE30351.1 1099 KKLSDISQSNQDFLNTLLQKLHGLLEGRFSKFVEEQIK 1136
                  78999999999999999999999999999999998765 PP

>> Vps52  Vps52 / Sac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   9.5e-05      0.34      31      99 ..     700     768 ..     680     808 .. 0.87
   2 ?   -2.6   0.1      0.47   1.7e+03     124     166 ..    1105    1148 ..    1095    1168 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 9.5e-05
       Vps52  31 eqledlLeeFqsdlssissdikklqekSnelqlrLenrkaveaklsklvddlivppelidvIiegkvne 99 
                 e+l +lL+ + ++ls +s di  ++ + + lq++  n+k  + +l +l++  ++ +  ++++  +++++
  CCE30351.1 700 EELDNLLTLYSVELSTLSDDIAYIEAQGQGLQVQTANQKLLRKELESLLETCAITSTDLEALRSAPLED 768
                 67899*********************************************9999988777777777766 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.47
       Vps52  124 lkalkDvk.klldkLrnkalekireyivqkiktlRkpkvnvqii 166 
                  +++++D+   ll+kL+     +  +++ ++ik++ + kv++ + 
  CCE30351.1 1105 SQSNQDFLnTLLQKLHGLLEGRFSKFVEEQIKAIEETKVKINKR 1148
                  56777775478888888888888888888888888877776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.48
# Mc/sec: 8787.27
//
Query:       CCE30352.1  [L=497]
Description: related to ADH4-alcohol dehydrogenase IV [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   8.2e-102  340.7   0.0   1.1e-101  340.4   0.0    1.1  1  Fe-ADH        Iron-containing alcohol dehydrogenase
    1.1e-14   54.7   0.0    7.9e-12   45.4   0.0    2.2  2  Fe-ADH_2      Iron-containing alcohol dehydrogenase
     0.0067   16.1   0.0       0.01   15.5   0.0    1.3  1  Peripla_BP_6  Periplasmic binding protein
  ------ inclusion threshold ------
        3.2    7.9   6.3        1.4    9.0   3.4    2.0  2  DUF1658       Protein of unknown function (DUF1658)


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.4   0.0  2.4e-105  1.1e-101       2     354 ..      77     472 ..      76     479 .. 0.95

  Alignments for each domain:
  == domain 1  score: 340.4 bits;  conditional E-value: 2.4e-105
                 SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHHH CS
      Fe-ADH   2 trivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKai 100
                 + i+fg+g+++e+g ++++lgak++ +vtd+ +  k++++++v+e+l+++gi ++vf++v+ +p++++++ea++ +r  ++d+++avGGGsviDtAK++
  CCE30352.1  77 SSIRFGPGVTQEVGMDFRNLGAKKVAVVTDATVD-KLDAMRQVRECLTREGIGFEVFSNVRVEPKDSSIKEAINWVRPYQPDAFLAVGGGSVIDTAKLM 174
                 579*****************************65.**************************************************************** PP

                 HHHTT........................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHH CS
      Fe-ADH 101 alllanpe..vedyl....gegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahal 193
                 +l+l++pe  + d++    g+g++  k+  plia+PTtaGtGse+t++a+++  ++ +k+++++++l P+l i+Dp  t t+P++v a++glD+l+h l
  CCE30352.1 175 NLYLNYPEadFLDFVnaplGNGRPIDKPLSPLIAVPTTAGTGSETTGTAIFDLVSKRAKTGVAHRNLKPTLGICDPLNTRTMPAAVKASSGLDVLCHSL 273
                 ******9559999999999*****99999***********************99999****************************************** PP

                 HHHHH.H..................T---TTSSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC....CG... CS
      Fe-ADH 194 Eayvs.k..................kanplsdalaleairliaknleravadgedleareqmllastlaglafsnaglgavHalahalgal...fg... 267
                 E+ ++ +                  +anp+sd+++ +a+r  +k+l+rav+d++d ea ++mllastlag++f+nag++++H+++++++++   ++   
  CCE30352.1 274 ESWTAiPynertprppnpimrpayqGANPISDVFSFHALRRTVKYLPRAVKDPDDFEAQSEMLLASTLAGVGFGNAGVHLCHGMSYPISGQnpgYQhag 372
                 *****66***********************************************************************************867721455 PP

                 .......GGGGS-HHHHHHHHH..........HHHHHHT...........T--HHHHHHHHHHHHHTT.---SHHHHT-TT-HHHHHHHHHT-T.SGGG CS
      Fe-ADH 268 .......iphglanaillpavlrfnaeaaperlaqlaralgge....sdeeaaeeliealrellkelg.lptsLselgvdeedldklaeaalkd.rsla 353
                        iphg+++a+  pav+rf+a+++p+r+ + a+a+g +    ++e+a e l+eal ++l++lg  p +L++lg+ ee++d+l+e ++ + r l 
  CCE30352.1 373 yevpaplIPHGVSVAVSAPAVFRFTAASNPRRHLDAAEAFGVDisnvKEESAGEVLAEALTRFLADLGdQPAGLRDLGFGEEHIDSLVEGTIPQaRVLM 471
                 666777799*******************************999****999*****************94577*******************99976665 PP

                 G CS
      Fe-ADH 354 n 354
                  
  CCE30352.1 472 L 472
                 5 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   1.8e-15   7.9e-12       2      99 ..      81     179 ..      80     183 .. 0.95
   2 !    7.5   0.0   0.00068         3     174     235 ..     300     361 ..     204     387 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 1.8e-15
    Fe-ADH_2   2 igegaleklgellkelelkkvllvadentkka.agekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsakln 99 
                 +g+g+ +++g  +++l++kkv++v+d+++ k+ a ++v+e l+++gi  ev+++v+ e++ +++++ ++ +r+ + d+++avGgG++iD+ak++   ln
  CCE30352.1  81 FGPGVTQEVGMDFRNLGAKKVAVVTDATVDKLdAMRQVRECLTREGIGFEVFSNVRVEPKDSSIKEAINWVRPYQPDAFLAVGGGSVIDTAKLMNLYLN 179
                 789****************************99***********************************************************9876655 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00068
    Fe-ADH_2 174 anevseplaklsaamvqeaaeklvedkketealeellealalsgigisrpaSGsEHliSHal 235
                 an +s+ ++  + + +++ + ++v+d+++ ea +e+l a++l+g+g+ +++   +H +S  +
  CCE30352.1 300 ANPISDVFSFHALRRTVKYLPRAVKDPDDFEAQSEMLLASTLAGVGFGNAGVHLCHGMSYPI 361
                 56778888999999999******************************887777777666544 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.3e-06      0.01     126     201 ..      91     166 ..      54     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.3e-06
                   HHHHHHHTTSCEEEEEEESSHHHHHHHHHHHHHHHCCTEE..EEEEEEE-TTHHHHHHHHHHHHTTT-SEEEEESSHH CS
  Peripla_BP_6 126 veylakelggkkvalvyadyafgregiaalkaaakaaGge..vvgeepvplgttdfsaqvlqikaagadavllagtga 201
                   +++  ++lg+kkva+v++++    ++++++++ ++++G+   v  +++v++ +++ +++++ ++  ++da l++g+g+
    CCE30352.1  91 MDF--RNLGAKKVAVVTDATVDKLDAMRQVRECLTREGIGfeVFSNVRVEPKDSSIKEAINWVRPYQPDAFLAVGGGS 166
                   443..679*****************************66665****************************88888775 PP

>> DUF1658  Protein of unknown function (DUF1658)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.4   0.00032       1.4       8      19 ..      27      38 ..      25      40 .. 0.91
   2 ?   -3.4   0.0       2.7   1.2e+04       4       9 ..     280     289 ..     278     289 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00032
     DUF1658  8 iPARPsHGrdGr 19
                +PA P+H+++G+
  CCE30352.1 27 PPACPCHSNPGH 38
                8**********9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.7
     DUF1658   4 K....TrriP 9  
                 +    T+r+P
  CCE30352.1 280 PynerTPRPP 289
                 5555589998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3572.06
//
Query:       CCE30353.1  [L=194]
Description: uncharacterized protein CPUR_04201 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-10   40.6  11.4    3.9e-07   29.5   0.4    4.2  4  Hexapep     Bacterial transferase hexapeptide (six repeats)
     0.0013   18.5  13.4        5.1    6.9   0.1    4.8  5  Hexapep_2   Hexapeptide repeat of succinyl-transferase
     0.0021   17.1   0.3      0.013   14.5   0.0    1.9  2  Fucokinase  L-fucokinase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.056   3.4e+02       3      16 ..      42      55 ..      27      60 .. 0.64
   2 !    6.3   0.1    0.0014       8.3      21      35 ..      63      77 ..      40      78 .. 0.68
   3 !    8.5   1.0   0.00028       1.7      18      35 ..      89     106 ..      88     107 .. 0.92
   4 !   29.5   0.4   6.6e-11   3.9e-07       1      35 [.     109     143 ..     109     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.056
                EEETTEEE-TTEEE CS
     Hexapep  3 vIGsnvlIgpfavi 16
                +I s ++I+p a +
  CCE30353.1 42 TIQSESIIHPRARL 55
                44444455554444 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0014
                EE-TTEEEETTEEEE CS
     Hexapep 21 kIGdnvkIgagvvig 35
                 IG+++++++ + ig
  CCE30353.1 63 LIGRRCIVHERTHIG 77
                477777777766665 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00028
                 TTEEE-TTEEEETTEEEE CS
     Hexapep  18 gnVkIGdnvkIgagvvig 35 
                 g+V++Gd+v+++ g+vi 
  CCE30353.1  89 GGVVLGDYVVVEVGTVIE 106
                 79**************96 PP

  == domain 4  score: 29.5 bits;  conditional E-value: 6.6e-11
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 +t++G+++++  +++ig+++kIG+n++I + +vi+
  CCE30353.1 109 DTQVGEGTTLQVGCKIGSGAKIGRNCTISHKSVIA 143
                 689******************************96 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       0.7   4.2e+03      20      27 ..      29      36 ..      27      37 .. 0.76
   2 !    4.8   0.0    0.0041        24       7      26 ..      46      70 ..      40      71 .. 0.73
   3 !    5.7   6.5     0.002        12       4      34 .]      64     107 ..      62     107 .. 0.80
   4 !    4.0   0.1    0.0071        42      15      29 ..     113     127 ..     110     129 .. 0.89
   5 !    6.9   0.1   0.00085       5.1       3      27 ..     129     155 ..     127     156 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.7
                E-TT-EE- CS
   Hexapep_2 20 lGdncvvg 27
                + dn++++
  CCE30353.1 29 ISDNAILQ 36
                77999986 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0041
                T-EE-TT-EE....S.EEE-TT-EE CS
   Hexapep_2  7 nCliGanagi....G.vslGdncvv 26
                 ++i+++a      G + +G++c+v
  CCE30353.1 46 ESIIHPRARLeshsGsILIGRRCIV 70
                5788888884477745999999988 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.002
                 E-TT-EE-TT-EE.............SEEE-TT-EE-TT-EE-S CS
   Hexapep_2   4 IGdnCliGanagi.............GvslGdncvvgaGvvita 34 
                 IG +C+++ +  i             Gv lGd +vv+ G vi a
  CCE30353.1  64 IGRRCIVHERTHIgarpadpgtarsgGVVLGDYVVVEVGTVIEA 107
                 888888888888766666766677767**************976 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.0071
                 EESEEE-TT-EE-TT CS
   Hexapep_2  15 giGvslGdncvvgaG 29 
                 g G++l  +c++g+G
  CCE30353.1 113 GEGTTLQVGCKIGSG 127
                 679**********99 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.00085
                 EE-TT-EE-TT-EE..SEEE-TT-EE- CS
   Hexapep_2   3 iIGdnCliGanagi..GvslGdncvvg 27 
                 +IG nC i   ++i  G +l dn vv+
  CCE30353.1 129 KIGRNCTISHKSVIapGEELPDNTVVY 155
                 799999998888877887777777776 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.034   2.1e+02     284     311 ..      40      71 ..      18      99 .. 0.62
   2 !   14.5   0.0   2.2e-06     0.013     280     340 ..     104     164 ..      91     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.034
  Fucokinase 284 svsvgegsvie.hsslk...gnvsigsnsivs 311
                 s++++ +s+i    +l+   g++ ig ++iv+
  CCE30353.1  40 SITIQSESIIHpRARLEshsGSILIGRRCIVH 71 
                 33344444444433333322445555555554 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.2e-06
  Fucokinase 280 vle.ssvsvgegsvie.hsslkgnvsigsnsivsglelesseeslelpddtilqtlslklske 340
                 v+e ++ +vgeg+ ++  ++++++ +ig n+ +s+ ++ +  e  elpd+t++ +  l+++++
  CCE30353.1 104 VIEaGDTQVGEGTTLQvGCKIGSGAKIGRNCTISHKSVIAPGE--ELPDNTVVYSDGLRRQDQ 164
                 454467888888888778******************9999855..9*******9988888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1463.76
//
Query:       CCE30354.1  [L=486]
Description: probable NADH2 dehydrogenase (ubiquinone) flavoprotein 1 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-46  157.6   0.0    3.1e-46  157.0   0.0    1.3  1  Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subu
    3.4e-29  100.7   1.3    4.4e-29  100.4   0.2    1.8  2  NADH_4Fe-4S   NADH-ubiquinone oxidoreductase-F iron-sulfur bi
      1e-09   38.1   0.0    3.6e-09   36.4   0.0    2.0  2  SLBB          SLBB domain


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.0   0.0   5.2e-50   3.1e-46       1     149 [.      82     255 ..      82     258 .. 0.95

  Alignments for each domain:
  == domain 1  score: 157.0 bits;  conditional E-value: 5.2e-50
  Complex1_51K   1 vkeagivGrGGagfPthvKlkakakkkk......kylivNaaEcEPgltkDrllmreepheileGlkiaaealgaekgvigvrdekpeaiealekal 91 
                   vk++g++GrGGagfP+++K+++++ k        +yl+vNa+E+EPg++kDr +mr++ph+++eG+ +a +a++a+ ++i++r+e   +++ l++a+
    CCE30354.1  82 VKASGLRGRGGAGFPSGLKWSFMNFKGWendnkpRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNASAAYIYIRGEFVYEAAVLQNAI 178
                   799*******************986433567788*************************************************************** PP

  Complex1_51K  92 aeakaagl...........ldievvklagkYpaGeekaLiesltgr.evprgkpp..advgv.....vvnNveTlaa 149
                   +ea+++gl           +d+ ++++ag+Y++Gee+ Liesl+g+ + pr kpp  a vg+     +v NveT+a 
    CCE30354.1 179 NEAYKEGLigknacgsgydYDVYLHRGAGAYVCGEETSLIESLEGKpGKPRLKPPfpAAVGLfgcpsTVANVETIAV 255
                   *******************************************************8888888************985 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.2   7.1e+03      19      29 ..     258     268 ..     258     277 .. 0.84
   2 !  100.4   0.2   7.3e-33   4.4e-29       3      84 ..     372     453 ..     370     454 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.2
                  HHHHIIIIHHH CS
  NADH_4Fe-4S  19 tpCreGtkrll 29 
                  t Cr G  + +
   CCE30354.1 258 TICRRGGDWFA 268
                  68****99976 PP

  == domain 2  score: 100.4 bits;  conditional E-value: 7.3e-33
                  HHHHHHHHHHH--S--HHHHIIIIHHHHHHHHHTBT---HHHHHHHHHHHHHHSS--SSTHHHHHHHHHHHHHHHHHHHHHH CS
  NADH_4Fe-4S   3 arrllefyaaesCGkCtpCreGtkrllelleriaagegteedldlleelaetikgtslCalgdsaanpvlsalrkFreefea 84 
                  + rl +fy++esCG+CtpCreG+k+ ++++ r+++g+g+e+++d+l+el+++++g+++Calg++ a+p++ ++r+Fr e+ea
   CCE30354.1 372 ISRLSHFYRHESCGQCTPCREGSKWTEQIMSRFERGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEA 453
                  67899**************************************************************************997 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0     6e-13   3.6e-09       2      57 ..     281     331 ..     280     332 .. 0.91
   2 ?   -2.6   0.0       0.9   5.4e+03      28      37 ..     467     476 ..     466     483 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 6e-13
                 EEEESSBSS-EEEEEETT-BHHHHHHTTT-SBSS.........-E.EEE-SSSSS-- CS
        SLBB   2 VtVtGeVkrPgnyevpigttlsdlieqaGGltddadlksvnLarl.avipgGpmmgi 57 
                 ++++G+V++P+++e  + ++l++lie+++G+ + ++        l a+ipgG++++i
  CCE30354.1 281 FCISGHVNNPCTVEEEMSIPLRELIEKHCGGVRGGWD------NLlAIIPGGSSTPI 331
                 79*************************8888888873......7899********98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.9
                 TTT-SBSS.. CS
        SLBB  28 qaGGltddad 37 
                 +aGG+t +  
  CCE30354.1 467 LAGGWTANTK 476
                 79****9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3712.21
//
Query:       CCE30355.1  [L=124]
Description: uncharacterized protein CPUR_04203 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 956.10
//
Query:       CCE30356.1  [L=541]
Description: uncharacterized protein CPUR_04204 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00053   20.3   0.4     0.0066   16.8   0.2    2.6  2  Smr       Smr domain
     0.0031   17.9   7.3     0.0094   16.3   7.3    1.9  1  DUF1771   Domain of unknown function (DUF1771)
  ------ inclusion threshold ------
      0.041   13.6   0.2       0.14   11.9   0.1    2.0  2  CUE       CUE domain


Domain annotation for each model (and alignments):
>> Smr  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.2   1.2e+03      68      79 ..     259     270 ..     251     270 .. 0.86
   2 !   16.8   0.2   1.1e-06    0.0066       1      62 [.     457     530 ..     457     537 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.2
                 CCTGGGEEEEEE CS
         Smr  68 keGgkGavvVlL 79 
                  eG +Ga+vV+L
  CCE30356.1 259 CEGSQGATVVKL 270
                 5899******98 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.1e-06
                 EE-TT--HHHHHHHHHHHHHH..........HHHTT-SEEEEE--STTSTT..HCHHHHHHHHHHHCSTTEEEE CS
         Smr   1 lDLhglrraealnvletflda..........asakglrsvevihGkGahag..vgvLrpavmgwLagkeaveaf 62 
                 +DLhg  +++  ++ ++ +++            a++   ++vi+G G+h+   v  Lr++v   L +  +  ++
  CCE30356.1 457 IDLHGVLVHDGVRIARQKVQDwwqglgemraRKAREQGGFTVITGLGRHSAggVSQLRQCVAAALLQDGWKMSV 530
                 7999998888888888888886666666654333567899*********5557**********99988655554 PP

>> DUF1771  Domain of unknown function (DUF1771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   7.3   1.6e-06    0.0094       7      63 ..     390     451 ..     389     452 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.6e-06
     DUF1771   7 eAdeharkrnelfekAaeAyrrGd.....gaaAkelseqGkehgekmeeanreAaeaIfeer 63 
                 +Ad ++++r+ + + Aa+  rrG      ++aA +++++++e+ + ++ a   Aa+ +++e+
  CCE30356.1 390 RADTYHQARRDAASTAAQLHRRGAssplyRQAAGYYADRAREQARYAQSATSTAADLLVDEQ 451
                 79******************************************************999886 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.3e-05      0.14       2      39 ..     136     173 ..     135     176 .. 0.85
   2 ?   -2.1   0.0      0.56   3.3e+03      27      40 ..     259     272 ..     255     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHH CS
         CUE   2 eqmletLkemFPdldeevIravLrasngnvEatinaLL 39 
                 e+++  L++mF +l + +++++L   +g+   + + LL
  CCE30356.1 136 EDKILVLQSMFAELKPYDVSYALKKADGDFQMALDDLL 173
                 578899**********************9876666665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.56
                 CTTTHHHHHHHHHH CS
         CUE  27 sngnvEatinaLLe 40 
                   g+  at+ +LLe
  CCE30356.1 259 CEGSQGATVVKLLE 272
                 6788999******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4101.44
//
Query:       CCE30357.1  [L=1276]
Description: related to human PTC protein involved in nevoid basal cell carcinoma syndrome [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-81  273.8   6.7    1.7e-81  273.4   6.7    1.2  1  NPC1_N          Niemann-Pick C1 N terminus
    3.5e-72  243.7  12.4    5.1e-45  153.9   0.0    2.1  2  Patched         Patched family
    1.7e-49  167.6   3.4    1.7e-49  167.6   3.4    2.7  2  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ
    2.9e-05   23.1   8.8    2.9e-05   23.1   8.8    2.8  2  MMPL            MMPL family
  ------ inclusion threshold ------
      0.018   14.9   0.8      0.037   13.9   0.8    1.4  1  Folate_rec      Folate receptor family


Domain annotation for each model (and alignments):
>> NPC1_N  Niemann-Pick C1 N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.4   6.7   4.8e-85   1.7e-81       2     244 .]      34     266 ..      33     266 .. 0.96

  Alignments for each domain:
  == domain 1  score: 273.4 bits;  conditional E-value: 4.8e-85
      NPC1_N   2 grCalygeCgkksifgkelpcpyngpakelseearelLkelCpelfkeetkvCCdeeqletLkknlklaeellsrCpaClknflnlfCeftCspdqskF 100
                 grCa++g+Cgk+s+fgkelpc++n+ a++++ e r+ L++lC+++++ +++vCC+ +q+++Lk++l ++++l+ +CpaC++nf+n+fC+ftCspdqs F
  CCE30357.1  34 GRCAFRGQCGKQSLFGKELPCVDNDLAQDPDAELRQELVDLCGADWS-DGPVCCTLDQVRSLKSELGTPNTLIGSCPACKHNFFNMFCKFTCSPDQSLF 131
                 89********************************************9.*************************************************** PP

      NPC1_N 101 lnvtktekkkeekeavkevdyliseefaekfydSCkdvkfpatngkamdlicGgaakknaqkwlkflgdekanggsPfqinfklseeeeeeeegmepln 199
                 +nvt+++ k ++k  v+e+d+lise+++++fydSCk+vkf+ +n++amdli+Gga  kn++++lkflgd+k++ gsPfqin++    e++e+ +m +l+
  CCE30357.1 132 VNVTQAAPK-NDKLLVTELDQLISEKYGSGFYDSCKEVKFGGANSRAMDLIGGGA--KNYHDMLKFLGDKKPLVGSPFQINYP----ESYEDPSMGALD 223
                 ******965.5899*****************************************..***************99*********....468899****** PP

      NPC1_N 200 eetlkCnesldessaCsCvDCeesCpakpelpelke..sfkvggldg 244
                 ++++kCn ++d++++C CvDC+e+C   p+lp+++e  s++vg+l++
  CCE30357.1 224 MTPKKCN-DEDPNFRCVCVDCPEMC---PKLPDVEEsgSCRVGALPC 266
                 *******.999**************...77777777679****9998 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9   0.0   1.4e-48   5.1e-45     154     491 ..     523     871 ..     499     904 .. 0.85
   2 !   90.3   9.8   2.4e-29   8.5e-26     588     808 ..    1005    1236 ..     972    1238 .. 0.85

  Alignments for each domain:
  == domain 1  score: 153.9 bits;  conditional E-value: 1.4e-48
     Patched 154 lksakaivlqyflkldeeeve..elskeyerelekll...kdkyasehievsilhsqiledelqrnaktllpflvvtiaiLlvfsiivsvvlssd...a 244
                 + +a+a+ +++  + + e ++    + ++e++l + l   +d+ ++  + +s++++ +le+el++  +t +  ++++ +++++++++   +  +    +
  CCE30357.1 523 VTEAQALTVTWVINNPPEGSDarGTAIDWENKLRDRLlevQDEAKQRGLRLSFNTEISLEQELNKSTNTDAKIVIISYLVMFIYACMALGTPLKYvfrN 621
                 4455555555555444444331146889*****986511134444559*************************************99886433322334 PP

     Patched 245 lkidwvrskpilailgvlspvlAivsslGlllwlGfrfn.sivtvtPFLvLaiGvDdmflmvaawkrteakls...vkkrigealseagvaitiTslTd 339
                     +v sk++l +lg++  +++i +s+G+ +w+G++    iv v+PF+vLa+GvD++fl+v++ +r++ + +   v++r+++al   g++i+   lT+
  CCE30357.1 622 PALLLVESKVSLGLLGIIIVLMSITASIGFFSWVGLKATlIIVEVIPFIVLAVGVDNIFLIVHELDRVNLSCPdrmVEERVARALGRMGPSILFSALTE 720
                 566799******************************98725789***********************998877778*********************** PP

     Patched 340 vlsFgiGaittlpaiqlFciytavailfdfiYqitffaavlaiaakaeaegrhsllliiekeespsklqeiesessekdddkskeaee.lkskffreiy 437
                  ++F++Ga   +pa+  F++y+a a++++ + q+t+f + la+ + +  ++r  l ++ + ++  +++++  +++ + + + s+  ee +   f++++y
  CCE30357.1 721 TVAFALGAAVGMPAVRNFAAYAAGAVFINALLQMTMFVSFLALNQIRVEDRRCELWPWWQIKK--ARIYNNGNNGFVGSGHVSEIEEEsILQIFIKNTY 817
                 ******************************************987766666666777766455..569999999999989999999995666788899* PP

     Patched 438 apfllnksvrlvvlllfvvylaiaiyGcvnikegLepkklvledsplvevlkli 491
                 ap ll k v+l v+++f+  +a a+  +  i+ gL+   ++ ++s+l+++++++
  CCE30357.1 818 APRLLLKRVKLGVIVVFLGVFAAALALIPMIEIGLDQRVAIPDESYLIPYFNDL 871
                 ***************************************************987 PP

  == domain 2  score: 90.3 bits;  conditional E-value: 2.4e-29
     Patched  588 dlvwdnesdeettelkkfrftlalkdlseptdrtkllkelRsiadkese...lnvtvfdedaafadqlltilpstiqnivlallcmfvvallfipel 681 
                   + ++    +e+  +++  f++a   l+  +d  ++    R ia++       +v  +   + f dq+l i+p t   +   + ++fv+a++++ ++
  CCE30357.1 1005 AVAIN----HEDNTIEASHFRTAHTPLRSQADFINAYAAARRIASEITArtgQDVFPYSVFYIFFDQYLSIIPLTAALLSALVGIIFVIAAVLLGSP 1097
                  44555....6677788888899999********************98777779********************9988777777799*********** PP

     Patched  682 itvlvitlsivsidigviGflslWgvdLDpismitiimsiGfsvdlsaHiayaf......vrsekd........dakeRvvealealgwPvvqgalS 764 
                  +t++v t++++   i ++G +++ gv L ++s++++i+++G sv++ aHia a+      v               ++R+  +l ++g  v+ g + 
  CCE30357.1 1098 MTSAVLTITVTICVIDIMGAMAVFGVSLNAVSLVNLIICVGISVEFCAHIARAYtfpsrtV----MesnnttlrGRDARAWTSLVNVGGSVFSGITV 1190
                  *****99999999999**********************************85552132221....12334555556789999************998 PP

     Patched  765 T.ilgvlvLlfvdsymvqvFfktvvLv.vvigllHgLlilPillsl 808 
                  T +lgv vL+f  s + +++   v+L  vv+ +lH+L++lP+ ls+
  CCE30357.1 1191 TkLLGVCVLAFTRSKIFEIYYFRVWLAlVVFAALHALVFLPVALSV 1236
                  8578***************877777752789***********9985 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   3.4   4.7e-53   1.7e-49       2     151 ..     627     779 ..     626     781 .. 0.97
   2 ?   -2.1   8.9      0.88   3.2e+03      11     132 ..    1102    1232 ..    1094    1237 .. 0.72

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 4.7e-53
                     HHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHHHTTTCH...HHHHHHHHHHHCCCCHHCCCHHH CS
  Sterol-sensing   2 vkskfgLglagviivllsvasslgllaylgltltliilevlPflvlavgvdnifvlvkavqrtsrslde...seriaealgevgpsilltsltel 93 
                     v+sk+ Lgl g+iivl+s+++s+g+++++gl++tlii+ev+Pf+vlavgvdnif++v++++r++ s ++   +er+a+alg++gpsil ++lte+
      CCE30357.1 627 VESKVSLGLLGIIIVLMSITASIGFFSWVGLKATLIIVEVIPFIVLAVGVDNIFLIVHELDRVNLSCPDrmvEERVARALGRMGPSILFSALTET 721
                     89*************************************************************998877778*********************** PP

                     HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTXXTTTXXX CS
  Sterol-sensing  94 lalllgaltdvpavqeFclfaavavlvdFllqitfFvavLsldirreeserldvlccl 151
                     +a++lga++ +pav++F+ +aa av+++ llq+t+Fv++L+l++ r+e++r++++++ 
      CCE30357.1 722 VAFALGAAVGMPAVRNFAAYAAGAVFINALLQMTMFVSFLALNQIRVEDRRCELWPWW 779
                     ****************************************************998875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.88
                      HHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHHHTTTCH.........HHHHHHHHHHHCCCCHH.CCCHHH CS
  Sterol-sensing   11 agviivllsvasslgllaylgltltliilevlPflvlavgvdnifvlvkavqrtsrslde.........seriaealgevgpsill.tsltel 93  
                      + +i+v++ v+  +g +a++g++l+ ++l v   + + ++v+    + +a++  sr+  e         + r    l +vg s+++  ++t+l
      CCE30357.1 1102 VLTITVTICVIDIMGAMAVFGVSLNAVSL-VNLIICVGISVEFCAHIARAYTFPSRTVMEsnnttlrgrDARAWTSLVNVGGSVFSgITVTKL 1193
                      567899999999****************9.888888899999888899998765555444445667888888888888888887752345666 PP

                      HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHH CS
  Sterol-sensing   94 lalllgaltdvpavqeFclfaavavlvdFllqitfFvav 132 
                      l   + a+t+ +  + + +   +a++v  +l++++F+ v
      CCE30357.1 1194 LGVCVLAFTRSKIFEIYYFRVWLALVVFAALHALVFLPV 1232
                      655544466665555555555666666677777777765 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   8.8   8.2e-09   2.9e-05     165     319 ..     629     779 ..     623     787 .. 0.78
   2 ?    0.9  21.2     0.049   1.8e+02     148     324 ..    1078    1265 ..    1028    1271 .. 0.69

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 8.2e-09
        MMPL 165 rSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedr..eeaviravastgkvvtaaGltvaia 261
                   +   ll ++ v++s+ a++g+        gl+ +  ++     +++avG+D   l+v  +       +dr  ee v+ra++++g+ +++++lt  +a
  CCE30357.1 629 SKVSLGLLGIIIVLMSITASIGFF----SWVGLKATLIIVEVIPFIVLAVGVDNIFLIVHELDRVNLSCPDRmvEERVARALGRMGPSILFSALTETVA 723
                 4455667889999*****999992....34466777888888899********666666555444434444323689******************9999 PP

        MMPL 262 mlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGraalakprrkrkkrwW 319
                 ++  +++ +p++++++ ++a +v++ +l+ +T+  ++l+l   +  ++ rr +   wW
  CCE30357.1 724 FALGAAVGMPAVRNFAAYAAGAVFINALLQMTMFVSFLALNQIR--VEDRRCELWPWW 779
                 99999****************************99999886666..566666666677 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.049
        MMPL  148 ievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlil.alllglelstfvlgllvvlliavGtDYallLvsRyreelaa....gedreea 239 
                  +  + + +i+vi +++++S+++ +++ +tv + ++  +g ++++   l+++ l + ++   + + + + ++ a  + sR   e+++    g+d+ +a
  CCE30357.1 1078 LLSALVGIIFVIAAVLLGSPMTSAVLTITVTICVIDIMGAMAVFgVSLNAVSLVNLIICVGISVEFCAHIARAYTFPSRTVMESNNttlrGRDA-RA 1173
                  44456789**************************999999554413455566666555555555555555555556788776665411113343.34 PP

        MMPL  240 viravastgkvvtaaGltv..aiamlgLvvarlpvlaqvGvaialGv.lvdvlivlTllPAllvllGraalakprrkrkk......rwWrrlgr 324 
                    + +  +g+ v ++G+tv   + ++ L+++r ++++   + + l++ ++++l +l +lP  l+++G a+ ++p+ + +       r+Wr + +
  CCE30357.1 1174 -WTSLVNVGGSV-FSGITVtkLLGVCVLAFTRSKIFEIYYFRVWLALvVFAALHALVFLPVALSVAGGAGYVDPESEGTAaqdltdRRWRAIRV 1265
                  .44455555554.67888722577788***********9999998862579999*******9*******98866655555567777***87744 PP

>> Folate_rec  Folate receptor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.8     1e-05     0.037      16     111 ..      69     169 ..      54     181 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
                 STGGGGG.GGGTTS.BSSBHHHHHHTTSSSXTTTSS.TTTTSCXXHHHHHHHHHHHHHHHHXSCCGGGEEE......TCCEEEXSEE..EXHHHHHHHH CS
  Folate_rec  16 eklleeC.spyken.sCCtsetseelssdesilanfrwerCgelsqeCekfleqlecfyecsphlglwikp......erkerilkvp..LCeelCdawf 104
                 ++l ++C +++++   CCt ++ ++l+s+ ++ +n  + +C    ++C++ + +  c + csp+++l+++       + k  ++++   + e +   ++
  CCE30357.1  69 QELVDLCgADWSDGpVCCTLDQVRSLKSELGT-PNTLIGSC----PACKHNFFNMFCKFTCSPDQSLFVNVtqaapkNDKLLVTELDqlISEKYGSGFY 162
                 3455556357888746***********99998.44455555....89*********************5544467653333444444448888999999 PP

                 HHTTTSE CS
  Folate_rec 105 eaCkedl 111
                 ++Cke  
  CCE30357.1 163 DSCKEVK 169
                 9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.47
# Mc/sec: 8241.28
//
Query:       CCE30358.1  [L=515]
Description: uncharacterized protein CPUR_04206 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-37  129.1   0.5    1.7e-36  125.7   0.5    2.3  1  YTH       YT521-B-like domain


Domain annotation for each model (and alignments):
>> YTH  YT521-B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   0.5   9.5e-41   1.7e-36       1     166 []     245     382 ..     245     382 .. 0.91

  Alignments for each domain:
  == domain 1  score: 125.7 bits;  conditional E-value: 9.5e-41
                 EEEEEEEESHHHHHHHHHHHCEEEEEHHHHHHHHHHHHCS.EEEEEEEETTTSEEEEEEEEE......SEEBTTS-................GGCC--T CS
         YTH   1 kryFilKslseedlekSvetgvWatqkhnekkLdqafrtsekVyLiFsvnksgeFfGyArmasssssssavelassaseesasesidasaeessfweae 99 
                 +ryF++Ks +  ++ +S+++++W+tq++n + L qaf +s++V+L+Fsvn+s+ F+GyA+m+      s ++ +                   + w ++
  CCE30358.1 245 TRYFLVKSSTMTNVMRSQQDNLWVTQNKNGSLLAQAFLESKTVVLFFSVNRSKAFQGYAHMT------SLPDASIP----------------PPLWITA 321
                 59************************************************************......44444444................4677655 PP

                 TEE...........EEEEEEEEEEEEEEGHHCCCHCHCCCTT.BGCG--TTEEE-HHHHHHHHHHHC CS
         YTH 100 skkeeaseeskswgkpFkveWistkrlpfsrtrhlrnpwnenreVkvsrdgtelepsvGrqLlelfe 166
                 + +      + ++++pF+++W++t +++f+++ hl+n++ne+ +V+v rdg+e ++++Gr+++++++
  CCE30358.1 322 TAN------DMHTTHPFHIHWVKTAEISFYEFAHLKNALNEHLSVSVGRDGQEYPQDCGRRMVQVMN 382
                 544......57899**************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1815  (0.101233); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 3395.88
//
Query:       CCE30359.1  [L=442]
Description: uncharacterized protein CPUR_04207 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-49  168.1   4.5    5.9e-49  167.6   4.5    1.2  1  Mannosyl_trans2  Mannosyltransferase (PIG-V)


Domain annotation for each model (and alignments):
>> Mannosyl_trans2  Mannosyltransferase (PIG-V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   4.5   3.3e-53   5.9e-49      18     442 ..      22     441 ..      14     442 .] 0.78

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 3.3e-53
  Mannosyl_trans2  18 LviLfrialipddtsealnppcllaspslvdslvek.....llen.lvsWDsvyflkiaenGyeyeheyaflpllplfvsllskevlaplvgll 105
                      L +L++  l+    s+al p    +++ +++++  +     ll   l  WD+ y ++ + +G  ye+e+af  +lp  vs ++    + l g+ 
       CCE30359.1  22 LFLLWKGFLLAVALSAALAPAYDTSTTLFLERMYGRdarvpLLAAqLTRWDALYAMHASIKGRIYEQEWAFGLGLPALVSGIA----RLLAGVT 111
                      557899999999999999999988888888877665333334555599****************************9988766....4555666 PP

  Mannosyl_trans2 106 slravlvlsvfsls.illfllaavilsdvsvlvlkareasfkasllfclspaavflasiYseaLfallafsgvyslesgi.............s 185
                        + +l+  v+ l   + ++la   l++++vl   + + ++ ++ l +lspa  fl++ Y e+ fa ++f g      g               
       CCE30359.1 112 PSGYALEPMVAILLaHITHFLAVLCLYRLTVLLSGNARLAYLSAALHILSPAGLFLSAPYNESPFACFSFLGNLLFAVGLtsallgplrthgaM 205
                      67888886666544399*****************************************************997777777678899999999999 PP

  Mannosyl_trans2 186 issvllfalstivrsnglvsvgflmfsllqrffeaLi...elrkarkllkvliallLsvillflplvlfqyYaYkqfClqrsaGdevpWCksdv 276
                      i++ + f l+t+ rsngl s     ++ ++     ++     ++   l  +li+++L +++++   v+ q  a+ ++C +  +    pWC   v
       CCE30359.1 206 IAAGMSFGLATVFRSNGLTSGLLFAVEAVNSLRRIVVggsGSQRVGGL-VALIVAVLGGLCVAAGSVVPQTLAWMRYCAGD-RDVSRPWCDKMV 297
                      9999**************996666555555544444311044444444.45667789**********************99.52455******* PP

  Mannosyl_trans2 277 pllYsyiqshYWgvGlLkYyelkqvPnfLlaaPvlilvvysilsyvksrpelflslGlqaseknkklekakdltylsadvfvlvvhaa..vlvv 368
                      p++Y ++q++YW+vG+L+Y++l+qvP fLlaaP+l +++ s +   + +p+ + s    ++++n +  k           fv  + a+  v+ v
       CCE30359.1 298 PSIYTFVQEKYWNVGFLRYWTLNQVPLFLLAAPMLAILLTSGIDLFQ-NPQQV-SRVAGKPRNNDEGCK----------WFVRALAASqvVVAV 379
                      *******************************************9998.67654.444456666666455..........344444443004445 PP

  Mannosyl_trans2 369 iaflimhvqvltrflsasPllyWfaadllqktdlkkkkwkplaedkivklliyWkacaayilLgtlLfanflPf 442
                      +a++  hvq++tr+ s  P+ yW++a  l +   k+++ +      iv +++       y  ++  Lfa flP+
       CCE30359.1 380 LAIMTYHVQIITRISSGYPVWYWWVAGCLMEK--KRQRLGTV----IVMFMML------YGGVQGGLFATFLPP 441
                      677788*********************99943..55555444....4444443......344566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3380.12
//
Query:       CCE30360.1  [L=696]
Description: uncharacterized protein CPUR_04208 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-55  188.1   0.0    2.8e-55  187.3   0.0    1.3  1  MR_MLE_C  Enolase C-terminal domain-like
    0.00099   19.3   0.0     0.0022   18.2   0.0    1.6  1  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N
  ------ inclusion threshold ------
      0.066   12.4   0.0       0.11   11.6   0.0    1.3  1  MAAL_C    Methylaspartate ammonia-lyase C-terminus


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.3   0.0   4.6e-59   2.8e-55       3     219 ..     450     666 ..     448     667 .. 0.87

  Alignments for each domain:
  == domain 1  score: 187.3 bits;  conditional E-value: 4.6e-59
                 HHHHHHHHHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSSTTTHHHHHHHHHH..HH.S CS
    MR_MLE_C   3 aeearelvaeqgfravKlkvggddvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvppeddleglaelra..ra.s 98 
                  + +re +a qg+r++Klkvgg+ ++ed +r++ +r+++g +    lmvDanq w++++Ai+ +++l+ ++++++EEP++p dd+ g++++r+  +  +
  CCE30360.1 450 EALLRETLA-QGYRHFKLKVGGN-LEEDKRRLTIARNVIGYDRGNILMVDANQVWSVPEAIENMKQLAVFQPWFIEEPTSP-DDIFGHKAVREalKPyG 545
                 566667666.5********9997.*******************************************88************.78********9865589 PP

                 SEEEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCSSHHHHHHHHHHHHTTTTBEEEEEEGGGGH..TSGCSBSS CS
    MR_MLE_C  99 ipiaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgsgglglaaslhlaaaipnllileyfldael..leeellee 195
                 i +a+gE++++r  f+++l +ga+d++q+d++r gG++e+++v+ la+++gvpv+pHsg  g+gl   ++ +++i+ + +  +    e+  + +e++ +
  CCE30360.1 546 IGVATGEMVQNRVVFKQMLMNGAIDVCQIDACRLGGVNEVMAVLLLAKKYGVPVVPHSG--GVGLPEYTQHLSTIDYVVVSGQKSVLEYvdHLHEHFLH 642
                 **********************************************************5..555554444444444444444444444455789***** PP

                 SSEEETTEEECTSSSBTSSEB-HH CS
    MR_MLE_C 196 plevedGrvtvpdgpGlGveldee 219
                 p ++++G++++p  pG++ve+++e
  CCE30360.1 643 PSVIKNGYYQTPMNPGYSVEMKPE 666
                 *********************965 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.7e-07    0.0022      33     115 ..     287     381 ..     273     383 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.7e-07
                 EEECTTEEEEEEEE-STTGHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSS.............CHHHHHHHHHHHHHHHHHHTTSBHHHH CS
    MR_MLE_N  33 ietseGvvGigeatsvggraetikaelddhlapllvgkdaanisdlaqllkravlg.............nmsAkaaidmAlwDlkakalnlpladL 115
                 +et+    G+g  +++g r + i  +  +h+a+ l gk ++ + + +    r  +              +  A  a+  A+wDl +k+l+ p++++
  CCE30360.1 287 LETNSSFSGHGMTFTIG-RGNDIVCAAIRHVAERLQGKTLSSLVGSWGQTWRYLVSdsqlrwlgpekgvIHLALGAVVNAIWDLWGKVLGKPVWKI 381
                 56778889*********.999999999999*****************9999999999999*********************************986 PP

>> MAAL_C  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.9e-05      0.11     112     193 ..     524     599 ..     490     607 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.9e-05
      MAAL_C 112 gPldagskeeqierlaelreklkekgikvelvaDeWcntledirefvdaeaadlvqiktPDlGginntieavlyckekgvga 193
                 +P    + +++i   +++re+lk  gi v     e   +    ++   ++a d+ qi +  lGg+n+++  +l +k+ gv +
  CCE30360.1 524 EP----TSPDDIFGHKAVREALKPYGIGVA--TGEMVQNRVVFKQMLMNGAIDVCQIDACRLGGVNEVMAVLLLAKKYGVPV 599
                 43....455667777888999988888765..68999999999999*******************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4791.05
//
Query:       CCE30361.1  [L=106]
Description: uncharacterized protein CPUR_04209 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 819.84
//
Query:       CCE30362.1  [L=91]
Description: uncharacterized protein CPUR_04210 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.011   16.4   0.0      0.017   15.7   0.0    1.4  1  Asp_protease_2  Aspartyl protease


Domain annotation for each model (and alignments):
>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.0   9.6e-07     0.017       3      32 ..      35      69 ..      33      90 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.6e-07
  Asp_protease_2  3 vtinG..kpvrfllDTGas.ttlispelaekl..g 32
                    ++i+G   +++++ DTGa+ ++ ++pe+a+++   
      CCE30362.1 35 LKIDGigLKANAFCDTGAGiYLSMTPEFAQRAvkT 69
                    5788754799*********77********998443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 693.41
//
Query:       CCE30363.1  [L=574]
Description: uncharacterized protein CPUR_04211 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.011   14.9   0.0      0.019   14.1   0.0    1.3  1  PHA_synth_III_E  Poly(R)-hydroxyalkanoic acid synthase subuni


Domain annotation for each model (and alignments):
>> PHA_synth_III_E  Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.1e-06     0.019     210     249 ..     517     556 ..     507     564 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-06
  PHA_synth_III_E 210 vgvksverlreklqeaaekgkqiksaralfdlWveaaeev 249
                      v   ++erlr++++++++ + +++ a+a+fd+W +a+  v
       CCE30363.1 517 VMIAAYERLRDQISAMESPDPKLQGAKAMFDTWLDALKAV 556
                      56789******************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 4266.81
//
Query:       CCE30364.1  [L=396]
Description: related to switching protein SWI10 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-48  162.1   0.0    5.8e-48  161.7   0.0    1.2  1  Rad10     Binding domain of DNA repair protein Ercc1 (rad10/S
  ------ inclusion threshold ------
       0.15   12.7   0.0       0.32   11.6   0.0    1.5  1  HHH_5     Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> Rad10  Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.0   6.4e-52   5.8e-48       1     114 []      72     185 ..      72     185 .. 0.99

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 6.4e-52
       Rad10   1 tilvserqkgnplLkslknvpweykdivpDyvigsttcvlflslkyhklhpeYieerlkklkkkyklrvlLvlvDvedseevlkeLnkicilndltlll 99 
                 tilvs+rq+gnp+L+s++++pwey+di +D+v+g ttc+lflslkyh+lhpeYi++r+++l+ ky+lr+lL++vD++++e++l+eL+k++++n++t++l
  CCE30364.1  72 TILVSPRQRGNPILTSIRSIPWEYSDIPADFVLGLTTCALFLSLKYHRLHPEYIYTRIRNLQGKYDLRILLTMVDISNHEDALRELSKTSVVNNVTIIL 170
                 69************************************************************************************************* PP

       Rad10 100 awsaeeaaryletlk 114
                 +wsa ea+ryle++k
  CCE30364.1 171 CWSAAEAGRYLELYK 185
                 ************998 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.5e-05      0.32      11      55 ..     218     261 ..     216     263 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.5e-05
                 -HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHH CS
       HHH_5  11 GpktAlallsaGiesvedlaaadveeLakipGiGkktAeriilel 55 
                 ++++A+al+   ++s+   ++a++e+L+ i G G  +++r+  ++
  CCE30364.1 218 NKSDAVALVAS-FGSLKNAINAEQEQLSMISGWGGVKVKRWTAAI 261
                 6789*******.****************************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2768.16
//
Query:       CCE30365.1  [L=525]
Description: related to class I alpha-mannosidase 1B [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.5e-137  459.3   0.0   1.7e-137  459.1   0.0    1.0  1  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  459.1   0.0  9.3e-142  1.7e-137       1     457 [.      48     522 ..      48     523 .. 0.93

  Alignments for each domain:
  == domain 1  score: 459.1 bits;  conditional E-value: 9.3e-142
                     HHHHHHHHHHHHCTTSSEEETTTTEEE-SS.SS-CCHHHHHHHHHHCCHHHHHHHHHHHHHHC----S.SS.E..EEHHHHHHHHHHHHHHHHHH CS
  Glyco_hydro_47   1 afkhswegYkkyAwghDelrPlskkgrdtfgglgatlvDsLdtllimglkeefeeaveavekkidfdtsdske..vsvFEttIRyLGGLlsaydl 93 
                     af  sw+gY k+A++hD ++P++++++d  + +g+t+vD+L+t+++m+  + ++ ++++++ kidf+t+ +++  vs+FEt+IRyLGGLls ydl
      CCE30365.1  48 AFAISWNGYYKHAFPHDTFHPVTNGYEDDRAAWGVTVVDALSTAIVMNSLDIVQPMLDHIA-KIDFTTTAASNygVSLFETNIRYLGGLLSGYDL 141
                     6999*********************************************************.*****876654559******************* PP

                     H...........S-HHHHHHHHHHHHHHHHGGGSSTTS---SEEETTT--EE-.STCGCEEEHHHHCSSHHHHHHHHHHHT-CHHHHHHHCCHHH CS
  Glyco_hydro_47  94 s..........ekkedvllekAveladrLlpAFdtpsglpvarvnlkkrkaskkerassesvlAelgslslEftrLsqlTgdkkYedlaervtka 178
                                +++ d+ll++A+ lad L  AFdtpsg+p  +v l++++   k+++s ++++Ae+g+l+lE+trLs+lTg+k+Y++l+e++ ++
      CCE30365.1 142 LtgpykrlgatTQQVDILLKQAQSLADSLSIAFDTPSGIPDGTVFLNPTR---KHSNSPQNNIAEVGTLVLEWTRLSDLTGNKTYAKLIEKAQNY 233
                     *9********999*********************************5554...5556666788******************************** PP

                     HHCHC.C.HHHTTB-BSEEETTT--EESTEE-SSTTTHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHH.TEEE-TTT..--EEE-EECTTC CS
  Glyco_hydro_47 179 leelq.ektklpglvpikidastgkfvaekislgargDSyYEYllKqylllggeeeqyrkmyeealdaikkhllfrpskkkeddllfvgevtste 272
                     l + + + + +pglv++++++++g+f +++ ++g++ DS+YEYl+K+y++  ++  +y++++ +a+d++ +hll++p+++k  dl+f++ +t   
      CCE30365.1 234 LLHPTgSPEAWPGLVGTFVSTKNGSFLDSSGGWGGGDDSFYEYLIKMYVYDPEAYGEYKDRWVTAVDSTIDHLLSHPTSRK--DLTFLSGYT--- 323
                     ***9999999********************************************************************999..9******86... PP

                     TS.EE-EEEGGGGHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS...........S-ECTSSSSEEE-....GGG- CS
  Glyco_hydro_47 273 egklspeidhLscFlgGllalgakllekeedlelAkkltegcvkayeatktglmPEifevkpces......aeecewneekkdealk...riedr 358
                     ++k++p+  hL+ F+gG+++lg+  l+++++ +l+ +lte+++++y + + g++PE f++ + +       +  ++  +++ +++ k     ++ 
      CCE30365.1 324 GKKTHPNSGHLASFAGGNFILGGIVLNNDKYKQLGIQLTESYHETYLQEAAGIGPEGFRWVDAALpandtsN--KPPPADQAAFYKKagfYTTSG 416
                     6779********************************************************965545555432..333334444444455567899 PP

                     -B----HHHHHHHHHHHHH--THHHHHHHHHHHHHHHHCEETTEE--ECETTSS.S-EE-S-B-HHHHHTHHHHHHHHC-S-TTT-......TTT CS
  Glyco_hydro_47 359 kyllRPEaiESlfylYritgdekyrevgwemfealekatktesgysaledVtke.epekeDemeSFwlaEtlKYlYLlFsdedvls......lde 446
                      y+lRPE++ESl+y+Yr+tgd+ky++++w++fe++++ ++   g+++l+dVtk   + + Dem+SFw+aEtlKYlYL+F+ +  ++       +e
      CCE30365.1 417 YYILRPETVESLYYAYRLTGDKKYQNYAWRAFENVRRLARHGDGFAELKDVTKVdGGGFVDEMQSFWMAETLKYLYLIFAADGPVHvqgqggKNE 511
                     ****************************************************987899**************************9999******* PP

                     EEE-TTS-EEE CS
  Glyco_hydro_47 447 yVfnTeAHplk 457
                     +V+nTe+Hp++
      CCE30365.1 512 FVYNTECHPVR 522
                     *********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3783.50
//
Query:       CCE30366.1  [L=126]
Description: probable 13 kD U4/U6.U5 snRNP associate protein Snu13 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-21   76.2   0.1    1.7e-21   75.8   0.1    1.1  1  Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 famil
     0.0029   17.7   0.0      0.003   17.6   0.0    1.2  1  RNase_P_pop3    RNase P subunit Pop3
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.17   11.8   0.0    1.2  1  PELOTA_1        PELOTA RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.1   2.8e-25   1.7e-21       2      92 ..      19     109 ..      18     111 .. 0.95

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 2.8e-25
                     HHHHHHHHHHHHTEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHHHTTEEEEEESCHHHHHHHTTSSSECSEEEEEESTTTH CS
  Ribosomal_L7Ae   2 aieevlkkakkagklvlGlkevtkalergeaklvilAedvepeekkkllealckekevpyvkvkskkeLGelvgkkrpvsalaikdegdsk 92 
                     +i ++l+ a + ++ ++G++evtkal+rg+ ++ ilA+d+ep  +  +++ lc++k+ pyv+v+sk  LG+++g +r+v+a++i ++++s+
      CCE30366.1  19 EILDLLQSATHLRQAKKGANEVTKALNRGTCEIAILAADTEPLAILLHIPLLCEDKGTPYVYVPSKTLLGRACGVSRAVIAASINSNEASE 109
                     577889999999************************************************************************9999886 PP

>> RNase_P_pop3  RNase P subunit Pop3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   5.1e-07     0.003      28     124 ..       6      95 ..       1     126 [] 0.70

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.1e-07
  RNase_P_pop3  28 klvleLlqekvlkklvrlleskeneeseltvglneivelLecsesddvvllvcnkDtPsvLlsqlpllvavanltvklvqlpksaqakldeklGlsk 124
                   +  + L + ++ ++++ ll+   ++  +   g ne+ + L+  +  ++ +l+ + + P+ +l ++pll++ +    + v +p ++   l  + G+s+
    CCE30366.1   6 NAAWPLADAALTQEILDLLQ-SATHLRQAKKGANEVTKALN-RGTCEIAILAADTE-PLAILLHIPLLCEDKG--TPYVYVPSKT--LLGRACGVSR 95 
                   56688888889999998888.4455567789**********.88888888888777.************9987..5666666544..3445555555 PP

>> PELOTA_1  PELOTA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.8e-05      0.17      20      72 ..      31      85 ..      18      96 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.8e-05
    PELOTA_1 20 nliKPgigEaTRvlLRRvPekvlvrdeee..pdlahlllLakekgvpveevpdlp 72
                   K g  E T++l R + e  ++++++e  + l h+ lL+++kg+p++ vp+++
  CCE30366.1 31 RQAKKGANEVTKALNRGTCEIAILAADTEplAILLHIPLLCEDKGTPYVYVPSKT 85
                56688999******999999877777666456789*************9998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 976.51
//
Query:       CCE30367.1  [L=727]
Description: uncharacterized protein CPUR_04215 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-57  193.3   0.1    3.5e-57  192.3   0.1    1.5  1  Ndc80_HEC        HEC/Ndc80p family
    0.00093   19.7   4.1    0.00093   19.7   4.1    3.1  2  DUF16            Protein of unknown function DUF16
     0.0046   17.0  13.5     0.0046   17.0  13.5    3.9  3  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
  ------ inclusion threshold ------
      0.019   15.3   3.1       0.14   12.5   0.0    3.2  2  DUF2935          Domain of unknown function (DUF2935)
      0.024   15.1   9.4        0.4   11.2   0.4    4.0  2  NPV_P10          Nucleopolyhedrovirus P10 protein
       0.05   13.8  10.8       0.21   11.9   1.7    3.5  3  Ntox28           Bacterial toxin 28
       0.66    9.5  42.5       0.19   11.3  11.7    3.4  3  Filament         Intermediate filament protein
        1.2    9.2  43.4      0.075   13.1  16.4    3.7  3  DHR10            Designed helical repeat protein 10 domain
        1.5    7.9  27.2       0.76    8.8   9.7    2.6  2  Atg14            Vacuolar sorting 38 and autophagy-related su
        1.6    9.0  32.1       0.13   12.5   7.3    3.3  3  FliJ             Flagellar FliJ protein
        1.6    8.1  15.7        4.2    6.7   5.0    3.5  2  FliD_C           Flagellar hook-associated protein 2 C-termin
        1.9    7.9  35.0      0.056   12.9  11.8    2.6  2  Leu_zip          Leucine zipper
        2.3    8.5   9.3         23    5.3   0.1    4.8  5  DUF948           Bacterial protein of unknown function (DUF94
        3.2    7.1  42.3       0.26   10.7  13.1    3.3  3  Golgin_A5        Golgin subfamily A member 5
        3.2    8.1  10.4       0.11   12.9   2.1    2.4  2  DUF4510          Domain of unknown function (DUF4510)
        3.2    8.2  21.7         17    5.9   0.3    6.3  6  FlaC_arch        Flagella accessory protein C (FlaC)
        3.4    8.2  24.7       0.69   10.4   0.1    5.1  5  Fungal_TACC      Fungal Transforming acidic coiled-coil (TACC
        6.2    5.6  44.9        2.7    6.8  11.6    3.5  3  Spc7             Spc7 kinetochore protein
        7.6    6.1  36.8        5.1    6.7  11.4    3.4  3  Lebercilin       Ciliary protein causing Leber congenital ama
        8.1    6.7  13.1       0.29   11.4   1.8    3.4  3  UPF0231          Uncharacterised protein family (UPF0231)


Domain annotation for each model (and alignments):
>> Ndc80_HEC  HEC/Ndc80p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.3   0.1   3.9e-60   3.5e-57       8     150 ..     116     268 ..     109     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: 192.3 bits;  conditional E-value: 3.9e-60
   Ndc80_HEC   8 s.......stskasffsesekaasverDprplrdksfqseliqellefLkennfe....hsisaktlksPsqkdfssifkfLykrldpsyefqkkieee 95 
                 +       ++ ++sff+++ ++a v++Dprpl+d+sfq+++ qel+e+++ n+fe    h +s++++ksP+qkdf+++f++Ly+r+dps++f k+i++e
  CCE30367.1 116 PrqsmaggTSYRQSFFQTTLQPAGVPKDPRPLKDRSFQQRMGQELMEYMTLNDFEmqmgHVLSPNVMKSPTQKDFNYMFQWLYHRIDPSHKFLKNIDQE 214
                 444444467889*************************************************************************************** PP

   Ndc80_HEC  96 vvkilkelrYPfaesisKsqlaAvgtphtwptllaaLhWlvelaklleelseskt 150
                 v++ilk+lrYPf++si+KsqlaAvg+++ w+t+l++LhW+++la++l+ +  +++
  CCE30367.1 215 VPPILKQLRYPFERSITKSQLAAVGGQN-WSTFLGLLHWMMQLAQMLDGYVGNAY 268
                 **************************99.******************99987766 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   4.1     1e-06   0.00093      24     102 ..     374     455 ..     360     490 .. 0.90
   2 ?    5.3   4.1      0.03        26      33      95 ..     587     650 ..     560     688 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1e-06
                 HHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH..........HHHHHHHHHHHHHHHHHHH CS
       DUF16  24 qlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln...kvdetleliletLqkinkRlDsi 102
                 +++++     qr +k e +v+ l+e+++kl+++ ++ +e+ + l++ ++aqg +++   ++++  + + +  ++ ++RlD+i
  CCE30367.1 374 KFEDYNTLALQRSEKYEGRVTRLQEELDKLTEELKEAEEERRGLQKAVDAQGISMQdidRMNSERDRLQKGTESASQRLDEI 455
                 577788888899999*************************************888877788888888888888888888887 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH........HHHHHHHHHHHH CS
       DUF16  33 kqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln.kvdetleliletLqki 95 
                 k+ +++  ++v++l++++ + e++ ek  e  + +k   +aq e+++ k+ +    + e++q +
  CCE30367.1 587 KEAIEDKRNEVEALEHRVRAAEEEYEKTKEVTTAQKMASDAQIEKMEkKLSRMRAALTESVQLL 650
                 4444555566666666666666666666666666666666666666643333444455555544 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.6      0.14   1.3e+02      86     115 ..     322     351 ..     310     356 .. 0.45
   2 !   17.0  13.5   5.1e-06    0.0046       5     114 ..     374     479 ..     371     484 .. 0.92
   3 ?    5.7   9.1     0.017        15      58     113 ..     582     637 ..     563     648 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.14
  TPR_MLP1_2  86 eleeseesweeqkeelekelselekriedl 115
                 ++e+s ++  ++ e le e + l + ie+l
  CCE30367.1 322 DFEQSNAKYVSELEILEAENARLLEEIEEL 351
                 333333333333333333333333333333 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 5.1e-06
  TPR_MLP1_2   5 sleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelek 103
                 ++e+  + +++++e++e +++ lqe+l k +e++kea++  er  +++a d++ ++   ++++++++e+  l++  esa++ l+e ++  +e+++e   
  CCE30367.1 374 KFEDYNTLALQRSEKYEGRVTRLQEELDKLTEELKEAEE--ERRGLQKAVDAQGISM--QDIDRMNSERDRLQKGTESASQRLDEIKKRVAEKESEASC 468
                 5667777899*****************************..************9996..99*************************************9 PP

  TPR_MLP1_2 104 elselekried 114
                 +l+ele+ +e 
  CCE30367.1 469 KLDELERLVEK 479
                 99999997776 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.017
  TPR_MLP1_2  58 elqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekrie 113
                  l  ++e +++ ++e++ l+ ++ +a++e e+ +e  + qk + + +++++ek++ 
  CCE30367.1 582 LLDGIKEAIEDKRNEVEALEHRVRAAEEEYEKTKEVTTAQKMASDAQIEKMEKKLS 637
                 57778999999999999999999999999999999999999999999999999875 PP

>> DUF2935  Domain of unknown function (DUF2935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00016      0.14      12      84 ..     310     409 ..     309     482 .. 0.88
   2 ?    1.2   0.9       0.5   4.5e+02      69      95 ..     673     699 ..     573     706 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
     DUF2935  12 rimkeHalfiealldpkekdlikeakefkkeFekllaeavelseglv...........................rasseleeavakLneealkltreli 83 
                 r ++ H  ++++ +++++++++ e++ ++ e  +ll+e +el++ +                            + s++ e +v +L ee  klt+el 
  CCE30367.1 310 RMIASHVEVMAQDFEQSNAKYVSELEILEAENARLLEEIEELEKSTPnpakldeicsayegdkvkfedyntlalQRSEKYEGRVTRLQEELDKLTEELK 408
                 67788**************************************99999999999999999999999999999986667777777777777777777776 PP

     DUF2935  84 q 84 
                 +
  CCE30367.1 409 E 409
                 5 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.5
     DUF2935  69 akLneealkltreliqFkkellekvls 95 
                 ++L++e+ ++++ +i+Fk ++++++++
  CCE30367.1 673 EELHTEISRMLNDIIKFKIHVQKNLED 699
                 467788888888888888888887765 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   2.0     0.034        30      18      56 ..     391     433 ..     382     490 .. 0.81
   2 ?   11.2   0.4   0.00045       0.4       5      67 ..     582     645 ..     577     652 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.034
     NPV_P10  18 dkVdalqqqvddvqenlpdvte....lnekLdaqsaqLaelet 56 
                  +V+ lq+++d+++e+l++ +e    l++ +daq  ++++++ 
  CCE30367.1 391 GRVTRLQEELDKLTEELKEAEEerrgLQKAVDAQGISMQDIDR 433
                 5789999999999999988876555567777777777777765 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00045
     NPV_P10   5 iLlvIradikavddkVdalqqqvddvqenlpdvtelnekLd.aqsaqLaeletkvenIqdiLnp 67 
                  L  I+++i++  + V+al+++v   +e+ ++++e+++    a  aq++++e+k++     L++
  CCE30367.1 582 LLDGIKEAIEDKRNEVEALEHRVRAAEEEYEKTKEVTTAQKmASDAQIEKMEKKLSRMRAALTE 645
                 57789*****************************9987544166799*********99999984 PP

>> Ntox28  Bacterial toxin 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.7   0.00023      0.21      49     100 ..     406     457 ..     400     462 .. 0.93
   2 ?   -1.3   0.0       2.9   2.6e+03      84     103 ..     459     478 ..     456     479 .. 0.84
   3 ?    6.0   0.6     0.016        14      46      90 ..     610     656 ..     603     665 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00023
      Ntox28  49 HvkeltdaqkGLenvrralekelenppdsdteRevLerklkeavleLdrved 100
                  +ke ++ ++GL++  +a   ++++    ++eR+ L++  + a+++Ld +++
  CCE30367.1 406 ELKEAEEERRGLQKAVDAQGISMQDIDRMNSERDRLQKGTESASQRLDEIKK 457
                 58999999*****************************************986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.9
      Ntox28  84 LerklkeavleLdrvedfle 103
                 + +k +ea+ +Ld +e ++e
  CCE30367.1 459 VAEKESEASCKLDELERLVE 478
                 678899**********9987 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.016
      Ntox28  46 pydHvkeltdaqkGLen.vrralekelenppdsdteR.evLerklke 90 
                  y+  ke+t aqk  ++  ++++ek+l + + + te  + Le++  +
  CCE30367.1 610 EYEKTKEVTTAQKMASDaQIEKMEKKLSRMRAALTESvQLLEQRDIN 656
                 58999*******988762579****************5555555444 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2    0.0058       5.2      14      52 ..     328     365 ..     321     374 .. 0.84
   2 ?   11.3  11.7   0.00021      0.19     189     288 ..     385     483 ..     372     485 .. 0.91
   3 ?    0.4  17.7      0.43   3.9e+02     146     286 ..     564     701 ..     553     711 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0058
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX CS
    Filament  14 AsYidkVraLEqenkeLeakieeleekksaevsklkely 52 
                 A Y+     LE+en++L  +ieele+  +++++kl+e++
  CCE30367.1 328 AKYVSELEILEAENARLLEEIEELEKS-TPNPAKLDEIC 365
                 8899999*****************999.67777666655 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00021
                 XXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 189 aeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqe 287
                   e y+ ++++lqe+ +k +e+l++a+ee   l++ +++  i ++++  +++  +++l+   e  ++ l+++++ ++e+e+e +   +e++r ++ Y+ 
  CCE30367.1 385 RSEKYEGRVTRLQEELDKLTEELKEAEEERRGLQKAVDAQGISMQDIDRMNSE-RDRLQKGTESASQRLDEIKKRVAEKESEASCKLDELERLVEKYNT 482
                 4578*******************************************999866.67788888889999*****************************98 PP

                 H CS
    Filament 288 L 288
                 L
  CCE30367.1 483 L 483
                 7 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.43
                 XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 146 elqkqvseqvlvevdaarkld.Lteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasle 243
                 e+ ++ ++ + v +++   ld ++e++++ r++ e+l ++  + aee y++  e  + +   ++++++++++ ++ +r  + + +++l +++  + ++e
  CCE30367.1 564 EISERRNAAMEVMMKDHDLLDgIKEAIEDKRNEVEALEHRV-RAAEEEYEKTKEVTTAQKMASDAQIEKMEKKLSRMRAALTE-SVQLLEQRDINTKIE 660
                 33333334577777777777799999999999999986665.56888898766666666667777899999999999887754.566666666666665 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 244 aqlaeleerleaeleklqeklseleeelaeireemarqlreYq 286
                    + l  r ++ +e+l+ ++s++ +++ + + +++++l++Y 
  CCE30367.1 661 --YEQLVLRANSLREELHTEISRMLNDIIKFKIHVQKNLEDYA 701
                 ..56778888888999999999999999999999999999996 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.7       1.3   1.1e+03      29      61 ..     321     353 ..     313     357 .. 0.76
   2 ?   13.1  16.4   8.3e-05     0.075      29     116 ..     387     474 ..     382     475 .. 0.94
   3 ?    5.7  11.7     0.016        14      54     117 .]     578     641 ..     563     641 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.3
       DHR10  29 qvvekdlrsciklleeieaelakleeakkklke 61 
                 q++e+  ++ +  le +eae a+l e+ ++l++
  CCE30367.1 321 QDFEQSNAKYVSELEILEAENARLLEEIEELEK 353
                 667777778888888888888888887777765 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 8.3e-05
       DHR10  29 qvvekdlrsciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaakarleelr 116
                 +++e  + ++ + l+++ +el++ ee+++ l+++ da     ++   ++++++rlq+  e+a ++l+  +++ +ek+ +a  +l+el+
  CCE30367.1 387 EKYEGRVTRLQEELDKLTEELKEAEEERRGLQKAVDAQGISMQDIDRMNSERDRLQKGTESASQRLDEIKKRVAEKESEASCKLDELE 474
                 57889999999999999999999999999999999999999999999***************************************97 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.016
       DHR10  54 eakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaakarleelre 117
                 +  + l+  ++a+e+k++e++ le++ +  +   e+ +e ++ ++  +++  e+++++l ++r+
  CCE30367.1 578 KDHDLLDGIKEAIEDKRNEVEALEHRVRAAEEEYEKTKEVTTAQKMASDAQIEKMEKKLSRMRA 641
                 556678899**************************************************99986 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   9.7   0.00084      0.76      25     117 ..     387     479 ..     379     490 .. 0.85
   2 ?    4.1   9.5     0.024        21      41     142 ..     582     688 ..     553     706 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00084
       Atg14  25 yelrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsd 117
                 +++  r+++l++e + l +++++a+e+++  +++ d+   + ++++++ s++ +l++ ++  +++l++ kk+++ek  + + + d+l +  ++
  CCE30367.1 387 EKYEGRVTRLQEELDKLTEELKEAEEERRGLQKAVDAQGISMQDIDRMNSERDRLQKGTESASQRLDEIKKRVAEKESEASCKLDELERLVEK 479
                 5677899**********************99999999999**********************************9987766666666555555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.024
       Atg14  41 lkkkiekalegke.eaeqledkiknkkakleelk....sliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqia 134
                 l   i++a+e k+ e+e le +++   +  e++k    +++  + ++++++++kls+ ++++ e  + l++++ ++k  +++l +  n+l+e+ +++i+
  CCE30367.1 582 LLDGIKEAIEDKRnEVEALEHRVRAAEEEYEKTKevttAQKMASDAQIEKMEKKLSRMRAALTESVQLLEQRDINTKIEYEQLVLRANSLREELHTEIS 680
                 444555666655544444444555444444444411114445566779*****************************9999999999999999999999 PP

       Atg14 135 klqdaikr 142
                 +++++i++
  CCE30367.1 681 RMLNDIIK 688
                 99999875 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2        10   8.9e+03      44      64 ..     331     351 ..     315     355 .. 0.50
   2 ?    7.7   9.7    0.0045       4.1       3      98 ..     389     479 ..     382     487 .. 0.75
   3 ?   12.5   7.3   0.00015      0.13      28     109 ..     562     638 ..     552     644 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 10
        FliJ  44 aaelrnyqafisaldeaiaqq 64 
                 ++el +++a  ++l e+i+++
  CCE30367.1 331 VSELEILEAENARLLEEIEEL 351
                 344444444444444444444 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0045
        FliJ   3 aareLaeaqrelqqaeekleeleqyrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqearqerkklekLker 98 
                  + ++ + q el++  e+l e e++r+ +qk   ++  g+s++++   ++ +++l++  +++ q l+  +k+v ++++e   a  ++  le+L e+
  CCE30367.1 389 YEGRVTRLQEELDKLTEELKEAEEERRGLQKAVDAQ--GISMQDIDRMNSERDRLQKGTESASQRLDEIKKRVAEKESE---ASCKLDELERLVEK 479
                 456667778888888888888888888885444444..69999999999999999999999999999999999988764...55555555555555 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00015
        FliJ  28 rqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqearqerkklekLkerekkeeqkeenr 109
                 r+e +++ ++++     + +++ +  ++ ++eai+  ++e++ +e++v +a+ee+ + +    + ++  + +++++ k++ r
  CCE30367.1 562 RKEISERRNAAM-----EVMMKDHDLLDGIKEAIEDKRNEVEALEHRVRAAEEEYEKTKEVTTAQKMASDAQIEKMEKKLSR 638
                 445555566666.....88999*********************************999999999999999999999999876 PP

>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.0    0.0047       4.2     190     239 ..     432     481 ..     320     482 .. 0.85
   2 ?    4.5   2.9     0.022        20     142     233 ..     561     684 ..     546     690 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0047
                 SHHHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH CS
      FliD_C 190 gtlqtasknltkqikdldkkiedldkrletleerlkkqfaalekavskln 239
                 + ++++ ++l+k +++ +++ ++++kr+ ++e++   +  +le++v+k+n
  CCE30367.1 432 DRMNSERDRLQKGTESASQRLDEIKKRVAEKESEASCKLDELERLVEKYN 481
                 46679999999999999999****************************99 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHTTT...............................SS.......SXSHHHH..HHHHHHHHHSTT.SHHHHHHHHXXXXHHHHH CS
      FliD_C 142 LkkalkenpssveelFsgs...............................tsqektvtsdsglatr..lenllksyvkssngtlqtasknltkqikdld 207
                 L+k ++e+ ++ +e+ +++                               ++++k+vt  + +a++  +e++ k++++ +  +l+++ + l++++ +++
  CCE30367.1 561 LRKEISERRNAAMEVMMKDhdlldgikeaiedkrnevealehrvraaeeeYEKTKEVTTAQKMASDaqIEKMEKKLSRMR-AALTESVQLLEQRDINTK 658
                 55555555555555555555555555555555555555555555555555566667777777776444778888888887.888889999999999999 PP

                 HHHHHHHHCHHHHHHHHHHHHHHHHH CS
      FliD_C 208 kkiedldkrletleerlkkqfaalek 233
                  ++e+l  r+++l e+l++ ++++ +
  CCE30367.1 659 IEYEQLVLRANSLREELHTEISRMLN 684
                 99999999999999999998888865 PP

>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  11.8   6.3e-05     0.056      58     212 ..     314     474 ..     304     523 .. 0.71
   2 ?    0.1  15.2       0.5   4.5e+02     131     233 ..     586     690 ..     555     713 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.3e-05
     Leu_zip  58 shtnvLllrqlfsqAEkwhLklqaDiselenReLlEkiaefEekefkss...nkkeseelkkkkLePlneg..GgaeLLkkeierLkeenekLkerlke 151
                 sh++v  + q f+q +  ++  + +i e en  LlE+i e+E+++ +     +  +  e  k k e  n      +e  +  + rL+ee +kL e lke
  CCE30367.1 314 SHVEV--MAQDFEQSNAKYVS-ELEILEAENARLLEEIEELEKSTPNPAkldEICSAYEGDKVKFEDYNTLalQRSEKYEGRVTRLQEELDKLTEELKE 409
                 55544..56888888765554.56799****************987665111444567778888888776533567778888***************** PP

     Leu_zip 152 lEkqatsaleeksklekalkelqkelgekkdeke....nskeiskleeklaelkldlektleekt 212
                  E++   + +   +   +++++++  +e++  ++     s+++ ++++++ae +++ + +l+e +
  CCE30367.1 410 AEEERRGLQKAVDAQGISMQDIDRMNSERDRLQKgtesASQRLDEIKKRVAEKESEASCKLDELE 474
                 *9987665555555555555553333333222222223667777777777777777666655544 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.5
     Leu_zip 131 LkkeierLkeenekLkerlkelEkqatsaleeksklekalkelqkelgekkdeke...nskeiskleeklaelkldlektleektasaksleedlastk 226
                 +k  ie  ++e e L++r++  E++ +++ +e +  +k  +++q e  ekk ++     +++++ le++  + k+++e+ + + ++  ++l++++  + 
  CCE30367.1 586 IKEAIEDKRNEVEALEHRVRAAEEEYEKT-KEVTTAQKMASDAQIEKMEKKLSRMraaLTESVQLLEQRDINTKIEYEQLVLRANSLREELHTEISRML 683
                 46677777778888888888777765543.333333444444443333333322222266777778888888888888888888888888888888777 PP

     Leu_zip 227 helLkvq 233
                 ++++k +
  CCE30367.1 684 NDIIKFK 690
                 7776644 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.5   3.1e+03      26      49 ..     199     222 ..     192     224 .. 0.82
   2 ?    1.6   0.2      0.39   3.5e+02      34      65 ..     392     423 ..     386     448 .. 0.70
   3 ?    5.3   0.1     0.026        23      24      63 ..     448     487 ..     431     496 .. 0.85
   4 ?    0.3   0.6      0.98   8.8e+02      38      76 ..     586     620 ..     557     634 .. 0.48
   5 ?    1.7   0.3      0.35   3.1e+02      22      68 ..     634     680 ..     627     686 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.5
      DUF948  26 ktldeaaatieelekqvdpilkev 49 
                 + +d   ++++++ ++v pilk++
  CCE30367.1 199 HRIDPSHKFLKNIDQEVPPILKQL 222
                 5677788999**********9986 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.39
      DUF948  34 tieelekqvdpilkevedllakvnelledvne 65 
                 +++ l++++d++++e++++ ++ + l++ v  
  CCE30367.1 392 RVTRLQEELDKLTEELKEAEEERRGLQKAVDA 423
                 67777888888888887776666666555554 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.026
      DUF948  24 lkktldeaaatieelekqvdpilkevedllakvnelledv 63 
                 +++ lde++++++e e+++   l+e+e+l++k n+l+ ++
  CCE30367.1 448 ASQRLDEIKKRVAEKESEASCKLDELERLVEKYNTLAYQI 487
                 5678899999999999999999999999999999987665 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.98
      DUF948  38 lekqvdpilkevedllakvnelledvneklekvdpltea 76 
                 +++ ++   +eve+l + v++     +e+ ek +++t+a
  CCE30367.1 586 IKEAIEDKRNEVEALEHRVRA----AEEEYEKTKEVTTA 620
                 222222222233333333322....33344444444444 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.35
      DUF948  22 lklkktldeaaatieelekqvdpilkevedllakvnelledvnekle 68 
                 +kl+++  +++++++ le++  ++  e e+l+  +n l e+++ ++ 
  CCE30367.1 634 KKLSRMRAALTESVQLLEQRDINTKIEYEQLVLRANSLREELHTEIS 680
                 789999999999999999999999999****9999999998887765 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   8.5       0.2   1.8e+02      49     135 ..     320     412 ..     301     419 .. 0.55
   2 ?   10.7  13.1   0.00029      0.26       7     100 ..     384     482 ..     379     532 .. 0.77
   3 ?    6.0  14.1     0.008       7.1      67     173 ..     555     660 ..     546     712 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.2
   Golgin_A5  49 ldelkqerdllreelqklnqqieqlrtelqdleaqq.....qaeaeslre.qlqeleeqleeerkakeeveaelerlkeelryleeelvrska 135
                  ++ +q +  + +el+ l+ +  +l  e+++le+++       e+ s+ e    ++e+  +   +++e++e  + rl+eel+ l eel+++ +
  CCE30367.1 320 AQDFEQSNAKYVSELEILEAENARLLEEIEELEKSTpnpakLDEICSAYEgDKVKFEDYNTLALQRSEKYEGRVTRLQEELDKLTEELKEAEE 412
                 333344444444556666666666666666666654111112333333331445666666777777788888888888888888888876654 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00029
   Golgin_A5   7 qeledYKqkAarILQsKekliasLkegs.....geeglesstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqelee 100
                 q  e+Y  + +r+    +kl ++Lke++      +++++++ ++++++d +++erd l++ +++++q+++++++ +++ e++++   ++l+  ++++++
  CCE30367.1 384 QRSEKYEGRVTRLQEELDKLTEELKEAEeerrgLQKAVDAQGISMQDIDRMNSERDRLQKGTESASQRLDEIKKRVAEKESEASCKLDELERLVEKYNT 482
                 66789999999999999********976222223445668999*************************************9998888877666666543 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.008
   Golgin_A5  67 nqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrekeieklrnqlttkslsssse 165
                 +++   lr+e+ +  + + + + + ++ l  ++e++e +r++ e++e+ ++  +ee + ++e  + +k+ + ++i++ ek+++++r+ lt + +   ++
  CCE30367.1 555 RSNFLMLRKEISERRNAAMEVMMKDHDLLDGIKEAIEDKRNEVEALEHRVRAAEEEYEKTKEVTTAQKMASDAQIEKMEKKLSRMRAALTESVQL-LEQ 652
                 55566678888887777777777778888888888888888888888888888888888888888888888888888888888888888766544.355 PP

   Golgin_A5 166 selesRlk 173
                  +++ ++ 
  CCE30367.1 653 RDINTKIE 660
                 55555544 PP

>> DUF4510  Domain of unknown function (DUF4510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   2.1   0.00012      0.11      16      69 ..     387     443 ..     377     489 .. 0.66
   2 ?   -1.0   1.4       2.2     2e+03      42     115 ..     592     622 ..     559     682 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
     DUF4510  16 esGagelelvareLqalqeeLqeaaeaRRaawearv.gg.lgqGpewsaarr.alqe 69 
                 e+ +g++ ++  eL++l eeL+ea e+RR  ++a   +g   q  ++ ++ r  lq+
  CCE30367.1 387 EKYEGRVTRLQEELDKLTEELKEAEEERRGLQKAVDaQGiSMQDIDRMNSERdRLQK 443
                 5557889999*******************9888764344133444444443323443 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.2
     DUF4510  42 aRRaawearvgglgqGpewsaarralqeaVaqeLaaLqlsweqdeapakPhgphRlvraeagaaegaglraaev 115
                  +R + ea                                             hR+  ae++  +++++  a+ 
  CCE30367.1 592 DKRNEVEA---------------------L----------------------EHRVRAAEEEYEKTKEVTTAQK 622
                 22222222.....................2......................2333333333333333322222 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.3     0.019        17       4      36 ..     322     354 ..     320     369 .. 0.86
   2 ?    4.5   0.9     0.051        46       1      31 [.     392     422 ..     392     423 .. 0.94
   3 ?    5.1   0.1     0.033        30       7      38 ..     429     462 ..     428     488 .. 0.73
   4 ?   -0.8   0.0       2.3   2.1e+03       1      29 [.     469     507 ..     469     510 .. 0.67
   5 ?    2.2   0.4      0.28   2.5e+02      16      38 ..     583     605 ..     571     617 .. 0.81
   6 ?    0.8   0.2      0.76   6.8e+02       2      17 ..     629     644 ..     626     661 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.019
   FlaC_arch   4 elEnklsklsteletvkkeneelsksveelken 36 
                 ++E+   k  +ele +++en  l +++eel+++
  CCE30367.1 322 DFEQSNAKYVSELEILEAENARLLEEIEELEKS 354
                 56777788889*******************986 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.051
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksve 31 
                 r+  l+++l+kl  el+ +++e   l+k v+
  CCE30367.1 392 RVTRLQEELDKLTEELKEAEEERRGLQKAVD 422
                 8999*******************99999997 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.033
   FlaC_arch   7 nklsklsteletvkkeneelsksveelkenV..k 38 
                 ++++++ +e + ++k  e+ s+ ++e+k++V  k
  CCE30367.1 429 QDIDRMNSERDRLQKGTESASQRLDEIKKRVaeK 462
                 5788999999999999************999651 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 2.3
   FlaC_arch   1 ridelEnklsklst..........eletvkkeneelsks 29 
                 ++delE  ++k  t          + ++++ +n el+ +
  CCE30367.1 469 KLDELERLVEKYNTlayqiavippTAANARGQNYELQLT 507
                 789999999888886666666666666666666666655 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.28
   FlaC_arch  16 letvkkeneelsksveelkenVk 38 
                 l+ +k+ +e+ +++ve l+ +V+
  CCE30367.1 583 LDGIKEAIEDKRNEVEALEHRVR 605
                 78899999999999999999996 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.76
   FlaC_arch   2 idelEnklsklstele 17 
                 i+++E+kls++   l+
  CCE30367.1 629 IEKMEKKLSRMRAALT 644
                 7788888888877553 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00077      0.69      25      59 ..     316     353 ..     314     359 .. 0.83
   2 ?    6.1   0.9     0.017        16      16      54 ..     384     421 ..     376     431 .. 0.58
   3 ?    0.9   0.7       0.7   6.3e+02      36      67 ..     434     465 ..     427     475 .. 0.67
   4 ?    1.4   0.5       0.5   4.5e+02      38      69 ..     581     612 ..     575     618 .. 0.79
   5 ?    2.5   3.6      0.22     2e+02      33      77 .]     608     652 ..     601     652 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00077
  Fungal_TACC  25 Vkllkkgye...akyqkkldklelenkslkqeieqLkk 59 
                  V+++ + +e   aky ++l+ le en +l +eie+L+k
   CCE30367.1 316 VEVMAQDFEqsnAKYVSELEILEAENARLLEEIEELEK 353
                  66777777633369**********************98 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.017
  Fungal_TACC  16 qYSsKHEqKVkllkkgyeakyqkkldklelenkslkqei 54 
                  q S+K E +V  l+++   k  ++l++ e+e+++l++ +
   CCE30367.1 384 QRSEKYEGRVTRLQEEL-DKLTEELKEAEEERRGLQKAV 421
                  55566666665555555.455555555555555554444 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.7
  Fungal_TACC  36 yqkkldklelenkslkqeieqLkkqleaerkE 67 
                   +++ d+l++  +s +q ++++kk+++ +++E
   CCE30367.1 434 MNSERDRLQKGTESASQRLDEIKKRVAEKESE 465
                  45566677777777777777777777666555 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.5
  Fungal_TACC  38 kkldklelenkslkqeieqLkkqleaerkEKq 69 
                  + ld +++  +  ++e+e L++++ a+++E +
   CCE30367.1 581 DLLDGIKEAIEDKRNEVEALEHRVRAAEEEYE 612
                  55777788888999**********99888744 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.22
  Fungal_TACC  33 eakyqkkldklelenkslkqeieqLkkqleaerkEKqeLlkllde 77 
                  e+ y+k  +  + ++ +   +ie+++k+l+  r+  +e ++ll++
   CCE30367.1 608 EEEYEKTKEVTTAQKMASDAQIEKMEKKLSRMRAALTESVQLLEQ 652
                  6678888899999999*****************999999999986 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  11.6    0.0031       2.7     166     283 ..     324     446 ..     302     448 .. 0.74
   2 ?    4.5   3.4     0.015        14     185     268 ..     436     519 ..     432     533 .. 0.55
   3 ?    6.6  16.9    0.0034         3     178     299 ..     560     692 ..     548     698 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0031
        Spc7 166 dellpeleeekaeleeeleklqeaaeelesid..keeLeelreelaelkaeieekk....kelaelqeqleeleekieelkeqkseleeeiaeaervle 258
                 ++   ++++e + le+e ++l e+ eele+++  +++L e+ ++ +  k++ e  +    ++ ++ + ++++l+e++++l+e+ +e+eee +  ++ ++
  CCE30367.1 324 EQSNAKYVSELEILEAENARLLEEIEELEKSTpnPAKLDEICSAYEGDKVKFEDYNtlalQRSEKYEGRVTRLQEELDKLTEELKEAEEERRGLQKAVD 422
                 344445566666666666666666666666443488888888888888888887661112345667778889999999999999999999999999998 PP

        Spc7 259 eckgwsesevsrlkeevkaleeltg 283
                   +g+s ++++r+++e ++l++ t+
  CCE30367.1 423 -AQGISMQDIDRMNSERDRLQKGTE 446
                 .789*****************9885 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.015
        Spc7 185 klqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesev 268
                 +++++ ++ +++ +++L e+++++ae ++e + k +el++l e+ ++l+ +i+ +    ++++ +  e + +++e  +++++++
  CCE30367.1 436 SERDRLQKGTESASQRLDEIKKRVAEKESEASCKLDELERLVEKYNTLAYQIAVIPPTAANARGQNYELQLTINEDSEFTSTNL 519
                 344444445555555566666666666666665556666665555555555555555555555555555555555555555555 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0034
        Spc7 178 eleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqe...........qleeleekieelkeqkseleeeiaeaervleeckgwse 265
                  l++e+ + ++aa e+   d++ L  ++e++++  +e+e+++ ++   +e           q+ +++++ie+++++ s++++++ e+ ++le++   ++
  CCE30367.1 560 MLRKEISERRNAAMEVMMKDHDLLDGIKEAIEDKRNEVEALEHRVRAAEEeyektkevttaQKMASDAQIEKMEKKLSRMRAALTESVQLLEQRDINTK 658
                 555555555555555555444444444444444444444444333333330000000111144566789999999*****************9999999 PP

        Spc7 266 sevsrlkeevkaleeltgwkivslsgstleltyr 299
                  e ++l  + ++l e++  +i ++ ++ ++++++
  CCE30367.1 659 IEYEQLVLRANSLREELHTEISRMLNDIIKFKIH 692
                 9***************999999999999998876 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.18   1.6e+02     145     184 ..     314     353 ..     300     357 .. 0.80
   2 ?    6.7  11.4    0.0057       5.1     121     191 ..     395     464 ..     384     482 .. 0.77
   3 ?    6.3  12.1    0.0075       6.7      60     133 ..     588     666 ..     563     701 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.18
  Lebercilin 145 rkleleeksfrrqlaaekkktkeaqeevkalqeeierlkq 184
                  ++e++ + f++  a+  +    +++e+++l eeie+l++
  CCE30367.1 314 SHVEVMAQDFEQSNAKYVSELEILEAENARLLEEIEELEK 353
                 5788888888888888888888888888888888888886 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0057
  Lebercilin 121 eLqkkLeeleakleekeekikeLerkleleeksfrrqlaaekkktkeaqeevkalqeeierlkqklkeKer 191
                 +Lq++L++l+++l+e+ee+ + L++ ++ +  s  + + + ++    +q+ ++++ ++++++k++++eKe 
  CCE30367.1 395 RLQEELDKLTEELKEAEEERRGLQKAVDAQGISM-QDIDRMNSERDRLQKGTESASQRLDEIKKRVAEKES 464
                 6788888888888888888888888888766554.456677777777888888888888888888888875 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0075
  Lebercilin  60 qllarhneEvrvlrerlRksqekerelek....klkekeaellrlkdklkklkk.LsedknLaereeLqkkLeeleakl 133
                 + ++  ++Ev++l  r+R ++e+++++++    +   ++a+++++++kl+++++ L e  +L+e+ ++++k+e  +  l
  CCE30367.1 588 EAIEDKRNEVEALEHRVRAAEEEYEKTKEvttaQKMASDAQIEKMEKKLSRMRAaLTESVQLLEQRDINTKIEYEQLVL 666
                 4567777888888888888877766655411113334677888888888888888888888888888888877655444 PP

>> UPF0231  Uncharacterised protein family (UPF0231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.8   0.00032      0.29      35     119 ..     396     482 ..     389     484 .. 0.74
   2 ?   -1.8   0.3         4   3.6e+03      29      55 ..     587     613 ..     566     634 .. 0.64
   3 ?    0.4   1.5      0.81   7.2e+02      37      86 ..     627     675 ..     614     692 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00032
     UPF0231  35 dlekiqevlaaieelkasqeeelqlkgkeyslllde.devevkanalaleedeeeel..eedlslydeesiafCGleDfeelleswqe 119
                  +e++++++++++e++++ ++ lq   +   + +++ d +++++ +l+  +++ ++   e + ++ ++es+a+C l+ +e+l+e++++
  CCE30367.1 396 LQEELDKLTEELKEAEEE-RRGLQKAVDAQGISMQDiDRMNSERDRLQKGTESASQRldEIKKRVAEKESEASCKLDELERLVEKYNT 482
                 567788888888888888.66666666666676665277779999998887776666233344567********************86 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4
     UPF0231  29 neevgkdlekiqevlaaieelkasqee 55 
                 +e +++++++++++ + +++++++ e+
  CCE30367.1 587 KEAIEDKRNEVEALEHRVRAAEEEYEK 613
                 455555666666666666666655333 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.81
     UPF0231  37 ekiqevlaaieelkasqeeelq.lkgkeysllldedevevkanalaleede 86 
                 ++i+++ +++++++a+ +e++q l+ ++++  ++ ++  ++an+l+ e   
  CCE30367.1 627 AQIEKMEKKLSRMRAALTESVQlLEQRDINTKIEYEQLVLRANSLREE--L 675
                 6788888889999988555554168899***************99443..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2140  (0.11936); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        70  (0.00390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.25u 0.33s 00:00:01.58 Elapsed: 00:00:00.50
# Mc/sec: 4357.25
//
Query:       CCE30368.1  [L=337]
Description: related to PEROXISOMAL MEMBRANE PROTEIN PER10 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-32  111.3  24.7    1.1e-31  110.6  12.3    3.4  2  Pex14_N       Peroxisomal membrane anchor protein (Pex14p) co
     0.0013   19.0   8.5     0.0015   18.8   6.5    2.0  2  Csm1_N        Csm1 N-terminal domain
     0.0031   15.1   5.5     0.0041   14.7   5.5    1.0  1  DUF3584       Protein of unknown function (DUF3584)
  ------ inclusion threshold ------
       0.01   15.7   3.2      0.016   15.1   3.2    1.2  1  Sigma70_ner   Sigma-70, non-essential region
      0.017   13.1   1.1      0.022   12.7   1.1    1.1  1  Prominin      Prominin
      0.091   11.6   6.0       0.16   10.8   6.0    1.3  1  Spc7          Spc7 kinetochore protein
      0.099   11.7   1.0       0.14   11.2   1.0    1.2  1  Atg14         Vacuolar sorting 38 and autophagy-related subun
       0.12   12.4   0.2        3.5    7.7   0.2    2.8  1  HLH           Helix-loop-helix DNA-binding domain
       0.14   12.2   1.7       0.26   11.3   1.7    1.5  1  DUF1043       Protein of unknown function (DUF1043)
       0.32   11.1   2.6       0.33   11.1   0.7    2.0  2  Mating_N      Mating-type protein beta 1
       0.51   10.4   6.3       0.81    9.8   6.3    1.2  1  DUF848        Gammaherpesvirus protein of unknown function (D
       0.89    9.6   4.1        1.9    8.6   3.6    1.8  1  DUF1664       Protein of unknown function (DUF1664)
        2.6    8.6  10.8        6.3    7.3   3.0    2.5  3  Spectrin      Spectrin repeat


Domain annotation for each model (and alignments):
>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6  12.3   8.1e-35   1.1e-31       1     157 []       4     120 ..       4     120 .. 0.81
   2 ?    1.9   4.5      0.22   3.1e+02      60     107 ..     247     284 ..     205     329 .. 0.43

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 8.1e-35
     Pex14_N   1 RedlveqAvkFLqdpsVrsaplekkvaFLesKGLtqeEIeeaLkraereeeasesavaassaseqaqeesasssatpqpqaasqtsqsspspsppaqqq 99 
                 Redlv++A +FLqdpsV+s+++e+k++FL+sK+Lt+eEI   L+r +                      +a ++a+ +p+++s +              
  CCE30368.1   4 REDLVASAAQFLQDPSVASSTVENKISFLRSKNLTEEEISVSLARIG---------------------GPAPPTAQYSPPPPSGP-------------- 67 
                 9********************************************44.....................22344444444444222.............. PP

     Pex14_N 100 qqqyrpPivtypefltkppkppppPlrtwrdllitatalaglgaglyglskryiaPmi 157
                 +q+y+pP+ ++       +++pp+P+r+wrd++i+at+++g+g++ly+lskry++P+i
  CCE30368.1  68 PQHYYPPYAQQ-----AWQPQPPVPRRDWRDWFIMATVVSGVGYSLYSLSKRYVYPLI 120
                 22345565554.....255667**********************************96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.22
     Pex14_N  60 ssas..eqa......qeesasssatpqpqaasqtsqsspspsppaqqqqqqyrpPi 107
                 ++ s  +++      +    + s+tp++++ +++++s+++ps             i
  CCE30368.1 247 TT-StyPRQpgsniaS----NRSTTPTAPTVESPADSPNTPS-------------I 284
                 11.1222222322221....1111111111111111111111.............1 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   6.5   1.1e-06    0.0015       4      66 ..     128     190 ..     126     198 .. 0.87
   2 ?    5.9   2.4     0.012        16       8      65 ..     157     214 ..     157     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.1e-06
      Csm1_N   4 LteYKesVqerldsAdllvsklvhENsvLsqkletkdqeiesLkeqlaeleekvkeleerrkk 66 
                 L + K+s++e+ d+A  lv++lv+   vL+++ +++++++ +  e+l ++ +++k ++ rr++
  CCE30368.1 128 LEQDKKSIEEQFDKAFALVEQLVKDTEVLKEAEQQRTEKLDTAIEELYSVMADLKTANRRRED 190
                 6788**************************999999999888888888888888888877766 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.012
      Csm1_N   8 KesVqerldsAdllvsklvhENsvLsqkletkdqeiesLkeqlaeleekvkeleerrk 65 
                 Ke+ q+r ++ d +++ l      L+++++ +++ +++++ +++ l+  + ++ +++k
  CCE30368.1 157 KEAEQQRTEKLDTAIEELYSVMADLKTANRRREDDVQRIRDEVQGLQLAIPKAMDNQK 214
                 78889**************99999********************99988877776665 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   5.5     3e-06    0.0041     602     699 ..     137     234 ..     125     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3e-06
     DUF3584 602 eeLrerlqaleealqsaeakqkqaeeelkqlnaeleeakravaeaatalknardtlerlqnekesekdklekaiaerkqqaeeqlqkldaqlkqleeq 699
                 e+  ++ + +e+ +++ e  +++ +++ ++l  ++ee+   +a+ +ta + ++d+++r+++e + ++ ++ ka+ ++k+    +l +++ +l  l+  
  CCE30368.1 137 EQFDKAFALVEQLVKDTEVLKEAEQQRTEKLDTAIEELYSVMADLKTANRRREDDVQRIRDEVQGLQLAIPKAMDNQKSLTDSRLSEINTELTSLKTL 234
                 4555555555555555555555555567899************************************************************9988764 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   3.2   1.2e-05     0.016      66     135 ..     128     201 ..     123     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
  Sigma70_ner  66 eeelkeealekfeelreqyeklrk....alkkkgrkskkyekareelseefkefrLtpkqidrLveqlrslver 135
                  +e++k+ + e+f++  ++ e+l k    + + ++++++k++ a+eel  +++ ++  +++ +  v+++r+ v+ 
   CCE30368.1 128 LEQDKKSIEEQFDKAFALVEQLVKdtevLKEAEQQRTEKLDTAIEELYSVMADLKTANRRREDDVQRIRDEVQG 201
                  45555555555555555555555555515555577******************************999998876 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.1   1.6e-05     0.022     631     713 ..     130     211 ..     111     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.6e-05
    Prominin 631 ekleelanelsngkknlkqslkneaqdlraiqqelvlplessvkklkksvkkldeensdlqesikkllaaveraenflkkngs 713
                 ++ +++ ++++++   l ++l ++ + l++ +q+++++l++++++l++ + +l++ n+  ++ ++++ ++v+ ++  ++k ++
  CCE30368.1 130 QDKKSIEEQFDKA-FALVEQLVKDTEVLKEAEQQRTEKLDTAIEELYSVMADLKTANRRREDDVQRIRDEVQGLQLAIPKAMD 211
                 3333344444444.7999******************************************************99999887665 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   6.0   0.00012      0.16     171     283 ..     127     236 ..     123     254 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
        Spc7 171 eleeekaeleeeleklqeaaeelesidkeeLeel.reelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesev 268
                 +le+ k+++ee+++k  + +e+l + d e L+e+ +++ ++l++ iee+   +a+l++   + e++++ ++++ + l+ +i +a   ++++k+ ++s +
  CCE30368.1 127 RLEQDKKSIEEQFDKAFALVEQLVK-DTEVLKEAeQQRTEKLDTAIEELYSVMADLKTANRRREDDVQRIRDEVQGLQLAIPKA---MDNQKSLTDSRL 221
                 5666666666666666666666555.5555555524556677777777777777777777777777777777777777777744...444445555555 PP

        Spc7 269 srlkeevkaleeltg 283
                 s++++e+ +l+ l+ 
  CCE30368.1 222 SEINTELTSLKTLYS 236
                 555555555554444 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.0    0.0001      0.14      34     160 ..     128     226 ..     109     272 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
       Atg14  34 lksekeslkkkiekalegke........eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqne 124
                 l  +k+s++++++ka +  e         +e ++++ +++ +++eel s +adl+  +++ +d++++ ++e++  +  ++k  d+ k            
  CCE30368.1 128 LEQDKKSIEEQFDKAFALVEqlvkdtevLKEAEQQRTEKLDTAIEELYSVMADLKTANRRREDDVQRIRDEVQGLQLAIPKAMDNQK------------ 214
                 334444444444444444443444333333333444444444555555555555555555555555555555555555555555555............ PP

       Atg14 125 leerrkkqiaklqdaikrieqklsslssktlesrss 160
                                         sl++++l+   +
  CCE30368.1 215 ------------------------SLTDSRLSEINT 226
                 ........................333333333222 PP

>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2    0.0026       3.5       7      28 ..     158     179 ..     156     254 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0026
                 HHHHHHHHHHHHHHHHHHHCST CS
         HLH   7 erErrRRdriNsaleeLrellP 28 
                 e+E++R +++ +a+eeL + + 
  CCE30368.1 158 EAEQQRTEKLDTAIEELYSVMA 179
                 89***************88876 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.7   0.00019      0.26      38      80 ..     126     190 ..     123     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
     DUF1043  38 aeleeqkqeledHfaqsaelLetlaedyqkLyqhlaksseeL......................l 80 
                 ++le+ k+ +e+ f+++  l+e+l +d++ L++  ++ +e+L                       
  CCE30368.1 126 ERLEQDKKSIEEQFDKAFALVEQLVKDTEVLKEAEQQRTEKLdtaieelysvmadlktanrrreD 190
                 689***************************************55555544444443333333330 PP

>> Mating_N  Mating-type protein beta 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.7   0.00024      0.33      29      93 ..     128     192 ..     126     194 .. 0.94
   2 ?   -2.8   0.0       4.9   6.8e+03      12      27 ..     222     237 ..     213     248 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
    Mating_N  29 Lrgesea.lstFlsawskfdellqschdsLseeTleliysfssliatvssgllelesekeaiedel 93 
                 L++++++  ++F +a++ +++l++   + L+e  +++  ++ ++i+ + s +++l++++ + ed++
  CCE30368.1 128 LEQDKKSiEEQFDKAFALVEQLVKD-TEVLKEAEQQRTEKLDTAIEELYSVMADLKTANRRREDDV 192
                 8899999899***************.78********************************999987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.9
    Mating_N  12 edvrqtLdalrkdFfs 27 
                  ++++ L++l++ + +
  CCE30368.1 222 SEINTELTSLKTLYSQ 237
                 4566666666655555 PP

>> DUF848  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.3   0.00059      0.81      35     129 ..     135     232 ..     125     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00059
      DUF848  35 FekQfddarkalrs.leqlkrtkeik.alveavdteieakkkelslLkklnrkkvarveeLtdkvlelkeevsleldsleeaqeeyqeg.essetsip 129
                  e+Qfd+a + +++ +++++  ke + +  e++dt ie+    ++ Lk  nr++ ++v+ ++d+v+ l+  +  ++d+ +   ++   + + + ts++
  CCE30368.1 135 IEEQFDKAFALVEQlVKDTEVLKEAEqQRTEKLDTAIEELYSVMADLKTANRRREDDVQRIRDEVQGLQLAIPKAMDNQKSLTDSRLSEiNTELTSLK 232
                 6889999988877624667766665516789**************************************99999999988888777767677777776 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.6    0.0013       1.9      36     111 ..     132     207 ..     125     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0013
     DUF1664  36 krslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeave 111
                 k+s+++  ++    +eq+ ++ +  k+  ++r +++d+ ++e   + +++k    + ++d+++i+++v+ ++ a+ 
  CCE30368.1 132 KKSIEEQFDKAFALVEQLVKDTEVLKEAEQQRTEKLDTAIEELYSVMADLKTANRRREDDVQRIRDEVQGLQLAIP 207
                 56666777777777889999999999999****************************************9998874 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         8   1.1e+04      64      86 ..      11      33 ..       5      41 .. 0.57
   2 ?    7.3   3.0    0.0046       6.3      44      98 ..     126     180 ..     124     184 .. 0.92
   3 ?    6.6   0.3    0.0077        11      42     100 ..     184     239 ..     176     241 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8
                HHHHHHTTHTTHHHHHHHHHHHH CS
    Spectrin 64 aeklldeghsaseeieerleeln 86
                a ++l+    as  +e++++ l+
  CCE30368.1 11 AAQFLQDPSVASSTVENKISFLR 33
                55555555555555555555444 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0046
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  44 kaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaae 98 
                 ++le++ ++ +e++++  +l e+l++  +  +e+ ++r+e+l+++ eeL + +a+
  CCE30368.1 126 ERLEQDKKSIEEQFDKAFALVEQLVKDTEVLKEAEQQRTEKLDTAIEELYSVMAD 180
                 68999999****************9999********************9887765 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0077
                 HHHHHHHHHHHHHHHHHHHH.HHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  42 khkaleaelaaqqervkaln.elaeklldeghsaseeieerleelnerWeeLkelaaerk 100
                 + ++ e++++  +++v+ l+ ++ +++    + ++  + +rl+e+n+   +Lk+l  +r 
  CCE30368.1 184 ANRRREDDVQRIRDEVQGLQlAIPKAM----DNQKSLTDSRLSEINTELTSLKTLYSQRM 239
                 444445555555555555553333333....34679999**************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1802  (0.100508); expected 358.6 (0.02)
Passed bias filter:                      974  (0.0543254); expected 358.6 (0.02)
Passed Vit filter:                       152  (0.00847788); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 2348.16
//
Query:       CCE30369.1  [L=497]
Description: uncharacterized protein CPUR_04217 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-43  147.0   0.1    4.3e-42  144.4   0.1    2.1  1  Abhydrolase_3  alpha/beta hydrolase fold
     0.0024   16.8   0.0     0.0058   15.5   0.0    1.6  1  Say1_Mug180    Steryl acetyl hydrolase


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.4   0.1   4.8e-46   4.3e-42       1     210 [.     178     416 ..     178     417 .. 0.84

  Alignments for each domain:
  == domain 1  score: 144.4 bits;  conditional E-value: 4.8e-46
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHH.HHT..ETTCEEEEEEETHHHHHHHHHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqaw.elg..adpsrivlaGdSaGGnlaaavalrar 93 
                    ++yfHGG+  +++++th++++++lak +g +++sv+Yrl P++pfPa + d+l a+  l+     +++  ++p++iv+aGdSaGGnla+a+ + + 
     CCE30369.1 178 MLYFHGGAHAMMDPSTHRPMVKRLAKFTGGRAFSVRYRLVPQNPFPASLLDCLVAYLTLLYPPPgSFHdaVKPEHIVIAGDSAGGNLAMALIQVLV 273
                    79************************************************************96666666************************99 PP

                    HTT---..............EEEEEEESE-SST..............SSTTSHHHHHCHHT.TTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGC CS
  Abhydrolase_3  94 degepk..............vagqvliyPvtdl..............ertesesikkaeel.adgplltraaldlfwrlylpeadrddplasplla 160
                    d ++ +              +a+++  +P++d                +  ++  ++ ++  + +++++++  + f  +y++++ +++pl+sp+++
     CCE30369.1 274 DLKRTGerimwhgeereipvPAAVACNSPWLDIahssqpyygkipeaFDYLGPLADLGRRGvEPCSIWPANPPRKF--MYAADDIITHPLVSPVMR 367
                    997666899********************88774333333332332223333444444444455555566666654..5778999*********** PP

                    S-SST---EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 161 edlsglpptlvvvaefDplrdegeayaerlraagvevelieyegmvHgfa 210
                    +d++g+pp++ + +++  l  e++ +a++l+  gv+v ++eye m+H+fa
     CCE30369.1 368 RDWAGFPPVYFCAGWE-RLAYEAKFLAQKLERDGVKVVFEEYEAMPHCFA 416
                    9*********987776.9*******************************8 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.5e-07    0.0058     125     239 ..     178     308 ..     157     324 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.5e-07
  Say1_Mug180 125 llylHGGgfalklipvtlvfLsnlrklfpdmailvsDYtvtaakdqskkYplqvleslavydylv........kskgfknvvvlGdSaGGnlvLslll 214
                  +ly+HGG  a+  +p t   +     +f       + Y ++     ++ +p  +l++l  y  l          +    ++v+ GdSaGGnl + l+ 
   CCE30369.1 178 MLYFHGGAHAMM-DPSTHRPMVKRLAKFTGGRAFSVRYRLVP----QNPFPASLLDCLVAYLTLLypppgsfhDAVKPEHIVIAGDSAGGNLAMALIQ 270
                  788888888874.55555555555555665555556688877....6778888999988886554111111114455578***********9887654 PP

  Say1_Mug180 215 k............lsklnkvv.lPkkaiaiSPWlnlti 239
                                +  ++++ +P  ++  SPWl+++ 
   CCE30369.1 271 VlvdlkrtgerimWHGEEREIpVPAAVACNSPWLDIAH 308
                  43333344444333333444446888889999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3702.52
//
Query:       CCE30370.1  [L=546]
Description: related to 24-dehydrocholesterol reductase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-13   49.2   0.0    7.4e-13   48.4   0.0    1.3  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   4.1e-17   7.4e-13      12     138 ..      10     135 ..       6     136 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 4.1e-17
                    HHHHHHHHHHHCTSCEEEESSSTTEE.STTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGSBHHHTTTT CS
  FAD_binding_4  12 evaaalrlaneaglpvlvrGgGssll.gqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgipgtvGGaiat 106
                     +aaa+r   e++   +++ g ++ +     + g+ ++d+s l +++ +d++++ta ve+ v++++lve + ++gl+ ++ ++     t+GG  a+
     CCE30370.1  10 KIAAAVRSFFEQKESYRIFHGSTNSTrPRP-RPGARIVDISSLSNVVGVDRAARTALVEPNVPMDRLVESTLRHGLVPPVVMEF-PGITAGGGYAG 103
                    6899999999****************5666.79*******99*****************************8888888876666.5669******* PP

                    T-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4 107 nagGygsekyGlirdnvlglevvladGevvrl 138
                     ag + s k+G + d++ + e+vl++G vv++
     CCE30370.1 104 TAGESSSFKHGYFNDTINSIEMVLGNGDVVTA 135
                    *****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3785.48
//
Query:       CCE30371.1  [L=452]
Description: probable hydroxymethylglutaryl-CoA synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.9e-103  344.9   0.4   4.9e-103  344.6   0.4    1.1  1  HMG_CoA_synt_C  Hydroxymethylglutaryl-coenzyme A synthase C t
    1.8e-96  321.0   0.2    2.6e-96  320.5   0.2    1.2  1  HMG_CoA_synt_N  Hydroxymethylglutaryl-coenzyme A synthase N t


Domain annotation for each model (and alignments):
>> HMG_CoA_synt_C  Hydroxymethylglutaryl-coenzyme A synthase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.6   0.4  5.5e-107  4.9e-103       1     279 [.     176     450 ..     176     451 .. 0.97

  Alignments for each domain:
  == domain 1  score: 344.6 bits;  conditional E-value: 5.5e-107
                     EEE-TT--EEEE----SEE---TT-S--EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH...-.-----GGG-SEEEE--SSHHHHHHHHHHHH CS
  HMG_CoA_synt_C   1 ivfdrklrashmehayDFykPdlaseYPvvDGklslscYlkaldrcYksyskkvkkitkd...a.dkeftlddfdyvifhsPfcklvqkslarll 91 
                     +v++++lr+++m+hayDFykPdl+seYP+vDG++s++cY kald +Y+ y+k+  k+t+    +  +++ ld+fdy++fh+P+cklvqks+arl+
      CCE30371.1 176 VVMEPGLRGTYMQHAYDFYKPDLTSEYPYVDGHYSINCYTKALDAAYRDYCKREAKLTSGtngTdASKTPLDRFDYLAFHAPTCKLVQKSYARLM 270
                     799**************************************************99888765543356677************************* PP

                     HHHHHH.S-HHHHHHH-GGGGGGTT--GGGGGT-HHHHHHHHHHHHHHHHHHTGGGGHHHHHH---GGGHHHHHHHHHHHHS-HHHHTT-EEEEE CS
  HMG_CoA_synt_C  92 ynDflanassdkeeevkekleekddlkldesltdkdlekallkiakelfkkkvkpsllvptevGnmYtaslyaalasllskvsadelagkriglf 186
                     y D+lan++ + +++v ++l  +   ++++sltd+ +ek+++ ++k+ f+++v+p+++v+t +GnmY  s+++ +aslls v  + l+gkr+g+f
      CCE30371.1 271 YHDYLANPDAPAFADVPAELRDM---DYEKSLTDRVVEKTFMGLTKQKFQDRVHPAIQVATMCGNMYCGSVWGGVASLLSFVDPKALEGKRLGVF 362
                     *******************9988...********************************************************************* PP

                     EEETTTEEEEEEEEE-S--STTSHHHHHTTTTHHHHHHTSEEE-HHHHHHHHHHHHHHTT--SB---S-GGGS-TT-EEEEEE-TTS-EEEEE CS
  HMG_CoA_synt_C 187 sYGsGlaaslfslrvkqdvsedsildiakvldlkkkLdsRkevtPeefeealelrekahlkknfkpqgsidsLaegtyyLeevDdkfRRsYav 279
                     sYGsGlaas++s+rv+++v+      i k l++  +L++R+ v+Pe f ++ elr++ahlkk+++p+g+  +++++tyyL++vD++f+R+Y+v
      CCE30371.1 363 SYGSGLAASFMSFRVNGNVES-----IHKNLNIPARLEARRAVSPETFDAMCELRHQAHLKKDYTPKGDPSTISPDTYYLTKVDEMFKREYNV 450
                     ********************9.....*****************************************************************87 PP

>> HMG_CoA_synt_N  Hydroxymethylglutaryl-coenzyme A synthase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.5   0.2  2.9e-100   2.6e-96       1     174 []       4     175 ..       4     175 .. 1.00

  Alignments for each domain:
  == domain 1  score: 320.5 bits;  conditional E-value: 2.9e-100
  HMG_CoA_synt_N   1 rpkdvgilaleiylpaqyvdqaelekfdgveagkytiglgqtrmgfvsdredinslsltvvqkllertkldydaigrlevgtetiidksksvksv 95 
                     rp+++gi+a+eiy+p+qyv+q+elekfdgv agkytiglgqt+m+f++dredi+sl+ltv ++ll+++++d +++grlevgteti+dksksvksv
      CCE30371.1   4 RPQNIGIKAIEIYFPSQYVEQSELEKFDGVAAGKYTIGLGQTKMSFCDDREDIYSLALTVTSNLLKKNNIDPNSVGRLEVGTETILDKSKSVKSV 98 
                     79********************************************************************************************* PP

  HMG_CoA_synt_N  96 lmqlfeesgntdiegidtlnacyggtaalfnavnwiessawdgryalvvagdiaiydsgnarptggagavalligpdap 174
                     lmqlf++  nt++egidt+nacyggt+alfn+vnw+essawdgr+a+vvagdia+y++gnarptggagava+l+gp+ap
      CCE30371.1  99 LMQLFGD--NTNLEGIDTVNACYGGTNALFNSVNWVESSAWDGRDAIVVAGDIALYAKGNARPTGGAGAVAMLVGPNAP 175
                     *******..*********************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3320.46
//
Query:       CCE30372.1  [L=658]
Description: related to BCS1 protein precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-51  174.2   5.1    2.8e-51  174.2   5.1    2.3  2  BCS1_N          BCS1 N terminal
      1e-15   58.3   0.0    3.7e-14   53.3   0.0    2.5  1  AAA             ATPase family associated with various cellula
      0.002   18.6   1.0     0.0044   17.4   0.0    2.1  2  AAA_16          AAA ATPase domain
     0.0058   16.6   0.0       0.02   14.9   0.0    1.9  1  AAA_5           AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.019   14.7   0.0        0.2   11.4   0.0    2.1  2  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
      0.033   13.8   0.0      0.077   12.6   0.0    1.6  1  AAA_25          AAA domain
      0.038   13.8  19.5       0.51   10.1   0.0    3.2  3  AAA_11          AAA domain
      0.077   12.7   0.1       0.86    9.3   0.1    2.2  2  IstB_IS21       IstB-like ATP binding protein
        3.2    7.5  14.3       0.68    9.7   8.5    2.2  2  Band_3_cyto     Band 3 cytoplasmic domain
        3.6    6.0  21.0        5.6    5.3  21.0    1.3  1  Borrelia_P83    Borrelia P83/100 protein


Domain annotation for each model (and alignments):
>> BCS1_N  BCS1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   5.1   1.6e-54   2.8e-51       4     187 .]      70     267 ..      67     267 .. 0.87
   2 ?    0.9   0.6      0.22   3.9e+02      52      73 ..     565     594 ..     483     634 .. 0.65

  Alignments for each domain:
  == domain 1  score: 174.2 bits;  conditional E-value: 1.6e-54
      BCS1_N   4 llaaarrllselaslirrrflvsveissdDeaydwvlaWlsaqpasrrsrelsvetrtksrssdssaee....dededeeedg................ 82 
                 +  ++ ++ + l+s++++++ +sv+i+ dDe+y++v+ Wls+q++s++sr++ ++t+++sr++   + +    d    +e+d+                
  CCE30372.1  70 VSVVWGYARDMLWSVVNDHLRSSVTIRTDDEIYNMVMLWLSRQKFSHNSRHFVANTNVNSRNRYVRSYHssdsD----SESDDdseknaqintltgass 164
                 55678888899**************************************************8555444455431....222112334567777888999 PP

      BCS1_N  83 kkkkplrylPavgtthlfrykgrllavtRereekssdsetgapeetltltclgrsreilkeLleearelalkkqegktviyraaagsggeWrrvasRpk 181
                  +k++l+y+P+ g th+f+y+ + l ++R r+ +++ +++++++e+l+++c+gr+++ilkeLl ear+l++k++ +kt+i+ra+   g++W+r++sR +
  CCE30372.1 165 PQKQALHYTPSCG-THYFWYRMQPLTFERIRNVEQNAQASSSEKEELRISCYGRNPRILKELLLEARQLHMKRDDRKTIIFRAN-MAGSYWERCMSRLN 261
                 6677*********.7****************98888888888****************************************66.78************ PP

      BCS1_N 182 RplstV 187
                 Rp+stV
  CCE30372.1 262 RPFSTV 267
                 *****9 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      BCS1_N  52 srelsve.trtksrssdssaee.......d 73 
                  re +++ t+ + +++d+++e+       +
  CCE30372.1 565 KREAEARkTKLDAKKQDEQKEDgekkgnkE 594
                 244444433333333333322232222220 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   2.1e-17   3.7e-14       2     130 ..     305     450 ..     304     452 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 2.1e-17
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.........................T CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.........................s 75 
                 ll+GppGtGK++l  a+a  + ++++ +s+s+       ++e+++  lf ++ +    +++++++id+ + +                          +
  CCE30372.1 305 LLHGPPGTGKSSLSLALAGYFRMRIYIVSLSNGS-----ATEDNLTTLFYDLPT---RCVVLLEDIDSAGLTHtreenpnpstspettttgdsdkkgsT 395
                 9*******************98887777777777.....77********99754...4**********9888877999999999999999988877633 PP

                 TCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEET CS
         AAA  76 gseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkiei 130
                  s+ ++++  ++ Ll+ ldgv ++e+  i+i++tn+++kld+al+r gR+d+ i +
  CCE30372.1 396 PSTPSSGRISLSGLLNILDGVASQEG-RILIMTTNHVEKLDKALIRpGRIDMTIPF 450
                 34455566678999999999999766.9***********************99976 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.5e-06    0.0044      22     148 ..     297     435 ..     285     440 .. 0.50
   2 ?   -3.2   1.5       5.2   9.3e+03      62      62 ..     535     535 ..     446     631 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.5e-06
      AAA_16  22 grp..elvllsGesGvGKsslvrellralekdggif...lrgkcdqlesa..ipysa.laqalareellrqllde..aesaeleawrekleeala.... 106
                 g p  +  ll+G++G+GKssl  +l+ +++ + ++     +g +++   +  + ++   +++     ll++++++  + ++e ++ + + +e+++    
  CCE30372.1 297 GIPyrRGYLLHGPPGTGKSSLSLALAGYFRMR-IYIvslSNGSATED--NltTLFYDlPTRCV---VLLEDIDSAglTHTREENPNPSTSPETTTtgds 389
                 44566899**************9999777776.44323333333333..12222222122222...333333333332222222222222222224455 PP

      AAA_16 107 ....avpelagaeasrllellkrll.allsrderplvlvlDdlqwad 148
                     ++p+ ++++ +  l  l ++l   +s+++r l+++  +++++d
  CCE30372.1 390 dkkgSTPSTPSSG-RISLSGLLNILdGVASQEGRILIMTTNHVEKLD 435
                 4443222222222.444455556665666665555666665555555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.2
      AAA_16  62 q 62 
                  
  CCE30372.1 535 P 535
                 1 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05      0.02       3      39 ..     305     341 ..     303     348 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HH CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdttee 39 
                 lL GppGtgKs+l+  la  ++ ++ +v l+ +  +e
  CCE30372.1 305 LLHGPPGTGKSSLSLALAGYFRMRIYIVSLSNGSATE 341
                 89*******************9999999998876544 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011       0.2      37      94 ..     305     363 ..     299     374 .. 0.82
   2 ?    0.7   0.0      0.22     4e+02      48      89 ..     456     499 ..     434     505 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
      RuvB_N  37 llyGpPGlGkttlakiiakelgvklkitsgPvl.ekagdlaalltnleekdvlfideih 94 
                 ll+GpPG Gk++l+  +a  + +++ i s       + +l++l+ +l ++ v+++++i 
  CCE30372.1 305 LLHGPPGTGKSSLSLALAGYFRMRIYIVSLSNGsATEDNLTTLFYDLPTRCVVLLEDID 363
                 89*****************9999999888655404556789999999998888888775 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.22
      RuvB_N  48 tlakiiakelgvklkitsgP..vlekagdlaalltnleekdvlf 89 
                 ++a+ i + + +  +  ++P  + eka+dlaal ++l +k  l+
  CCE30372.1 456 SMAAAIFRAIYAPYENETTPsrADEKATDLAALQAQLAKKRALM 499
                 5566666666555544444422679************9987765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.3e-05     0.077      19      54 ..     287     322 ..     276     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.3e-05
      AAA_25  19 ppprrwlvkgllpagelallaGapgtGKttlaldla 54 
                 p  rrw+  + +p     ll G+pgtGK+ l l la
  CCE30372.1 287 PVTRRWYANRGIPYRRGYLLHGPPGTGKSSLSLALA 322
                 668999999999********************9998 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.035        63     113     225 ..     127     271 ..      86     274 .. 0.66
   2 ?   10.1   0.0   0.00029      0.51      20      41 ..     304     325 ..     289     372 .. 0.82
   3 ?    0.9  15.1      0.18   3.2e+02     100     185 ..     535     621 ..     521     644 .. 0.53

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.035
      AAA_11 113 vekrlekee......kaqlakeiskeleklakelrafeeeeek....................................eklkkskekskskleqerrk 169
                 v++r +  +      + + +++ s++++++            +                                    ++++++++ s+s++e+ r  
  CCE30372.1 127 VNSRNRYVRsyhssdSDSESDDDSEKNAQI------------NtltgasspqkqalhytpscgthyfwyrmqpltferiRNVEQNAQASSSEKEELRIS 213
                 333332222222221222222222222222............022333344444688888888889999999999999999999999999999999999 PP

      AAA_11 170 lkkerkelskeleeaeesleeevldeaeivltTl.sga.gsklleklakkfdvviIDE 225
                 +     ++ kel  + ++l  +  d++ i++  + +g+  ++ +++l++ f +vi DE
  CCE30372.1 214 CYGRNPRILKELLLEARQLHMKRDDRKTIIFRANmAGSyWERCMSRLNRPFSTVILDE 271
                 99999999999999999999888889999986541333367889999999*****999 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00029
      AAA_11  20 tliqGPPGtgKTktivellsql 41 
                  l++GPPGtgK++  ++l  + 
  CCE30372.1 304 YLLHGPPGTGKSSLSLALAGYF 325
                 599*********9888877666 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.18
      AAA_11 100 iseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeek.......eklkkskekskskleqerrklkkerkelskeleeae 185
                 ++ a++sv  +    ++ ++ +  + +++ ++e e+ +++l+a++++e+k       +   k++e++   ++q++++ +k  ke ++++   +
  CCE30372.1 535 PEAAIQSVESWVLAMRKERQDKALKESERAKREAEARKTKLDAKKQDEQKedgekkgN---KEAEDE---KTQKEHEEQKDNKEKNENIPLSQ 621
                 5666677766666666666666777777777777777777777777766654443221...222222...22222222333333333322222 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.34   6.1e+02     136     169 ..     235     270 ..     228     282 .. 0.81
   2 ?    9.3   0.1   0.00048      0.86      48      68 ..     302     322 ..     289     325 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.34
   IstB_IS21 136 kryerrsiiitsnlpfaewdevlg..datlatAilD 169
                 kr +r++ii  +n+  + w+++++  +  ++t ilD
  CCE30372.1 235 KRDDRKTIIFRANMAGSYWERCMSrlNRPFSTVILD 270
                 788999***************998777778888887 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00048
   IstB_IS21  48 enivllGpsGvGKshlaialg 68 
                  + +l Gp+G+GKs l+ al+
  CCE30372.1 302 RGYLLHGPPGTGKSSLSLALA 322
                 567899*************97 PP

>> Band_3_cyto  Band 3 cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3       0.2   3.6e+02      70     128 ..     105     163 ..      79     215 .. 0.44
   2 ?    9.7   8.5   0.00038      0.68      70     160 ..     525     619 ..     493     635 .. 0.60

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.2
                  HHHTS-EE-CCHHHHHT-EEE-EE-TTS----------EE--SSS-SS-HHHHHHTTTT CS
  Band_3_cyto  70 raLLlkhrHqneekekgvllptvrslssigsllsekkkaskellskqssleteeakase 128
                   +L l ++  ++++++ v  + v+s + + ++  +  ++s+++ +++++++ ++++ ++
   CCE30372.1 105 VMLWLSRQKFSHNSRHFVANTNVNSRNRYVRSYHSSDSDSESDDDSEKNAQINTLTGAS 163
                  33333333333323333333333344443333333333333333333322222222222 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00038
                  HHHTS-EE-CCH...HHHHT-EEE-EE-TTS---------....-EE--SSS-SS-HHHHHHTTTTTSS--..........--SSTTGGGCCGGGS-T CS
  Band_3_cyto  70 raLLlkhrHqne...ekekgvllptvrslssigsllsekk....kaskellskqssleteeakaseslskssseeslsssleeekkkkkekilkkipe 160
                  + LLl+h+H  e   ++ ++++l ++++ ++ + ++se      +   ++++k  +++++e+k++++++ ++++e  ++++e+e++k +++  + ip 
   CCE30372.1 525 QGLLLRHKHDPEaaiQSVESWVLAMRKERQDKALKESERAkreaE---ARKTKLDAKKQDEQKEDGEKKGNKEAEDEKTQKEHEEQKDNKEKNENIPL 619
                  679*******99665556667777777777755444444433221...22222222333333333333334444444445555555555555555654 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  21.0    0.0031       5.6     214     300 ..     550     634 ..     471     655 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0031
  Borrelia_P83 214 raqvlkeeldkkqkdadkakkkadtaednadkqrkevreklqeaknlpepa...dvsskkedkkvaeekkreiekaqkeikkkdeeakka 300
                   r++      dk+ k+ ++ak++a+ ++ ++d ++++ +++  e k+ +++a   ++++++e++k ++ek  +i  +q+e kk+de a + 
    CCE30372.1 550 RKE----RQDKALKESERAKREAEARKTKLDAKKQDEQKEDGE-KKGNKEAedeKTQKEHEEQKDNKEKNENIPLSQEERKKDDESATQD 634
                   332....444455555555555555555555444433322222.2222222000222222222222333344444555555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2550  (0.142228); expected 358.6 (0.02)
Passed bias filter:                      874  (0.0487478); expected 358.6 (0.02)
Passed Vit filter:                       251  (0.0139997); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.46
# Mc/sec: 4310.65
//
Query:       CCE30373.1  [L=739]
Description: uncharacterized protein CPUR_04221 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.6    8.5   5.7       0.72   10.3   0.4    2.9  2  mono-CXXC  single CXXC unit


Domain annotation for each model (and alignments):
>> mono-CXXC  single CXXC unit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.6      0.43   7.7e+03      37      50 ..     606     619 ..     605     622 .. 0.77
   2 ?   10.3   0.4     4e-05      0.72      19      54 ..     688     721 ..     685     724 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.43
   mono-CXXC  37 rsSlasdkKtssss 50 
                 +  +as k t+sss
  CCE30373.1 606 NQTFASTKSTTSSS 619
                 67799988888887 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 4e-05
   mono-CXXC  19 asapdRsrlavDdvkdrvrsSlasdkKtssssvClq 54 
                 + +p  sr++ D+ +d   sS as    ssss  lq
  CCE30373.1 688 NEVP--SRGGRDGISDHFASSSASSWEISSSSSSLQ 721
                 6789..888***************999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 5391.08
//
Query:       CCE30374.1  [L=361]
Description: uncharacterized protein CPUR_04222 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2613.97
//
Query:       CCE30375.1  [L=318]
Description: probable SEC13-protein transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-26   92.0  18.6    1.3e-05   25.9   0.4    7.0  6  WD40         WD domain, G-beta repeat
    2.6e-12   46.9   7.4    3.4e-05   24.1   0.1    4.5  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    0.00051   19.1   0.1        0.8    8.6   0.0    3.5  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
  ------ inclusion threshold ------
       0.75    7.7   3.5        4.8    5.0   0.1    2.1  2  IKI3         IKI3 family


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.1e-05     0.047       8      37 ..      23      53 ..      17      54 .. 0.88
   2 !   25.9   0.4   2.8e-09   1.3e-05       3      38 .]      62     100 ..      59     100 .. 0.88
   3 !   11.5   0.1    0.0001      0.45       2      35 ..     109     145 ..     108     146 .. 0.81
   4 !   12.7   0.0   4.2e-05      0.19       6      38 .]     158     208 ..     156     208 .. 0.65
   5 !   21.7   0.4   5.7e-08   0.00026       6      37 ..     222     257 ..     217     258 .. 0.82
   6 !   13.6   0.3   2.2e-05     0.098      10      38 .]     277     303 ..     264     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
                ESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  8 tGHss.vtslafspdgawlasGsdDgtvriW 37
                +GH++ +++   + +g+ la++s D+tv+i+
  CCE30375.1 23 SGHDDmIHDAVLDYYGRKLATCSSDRTVKIF 53
                79*66899999999********88*****97 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 2.8e-09
                 EEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 
                 ++ tl+GH + v++++   +++g+ las+++Dg+v iW+
  CCE30375.1  62 HIETLKGHeGAVWCVSwaHPKYGNILASSGYDGKVFIWK 100
                 56789***888****9999999999**9999*******6 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.0001
                 EEEEEEESS.SSEEEEEEETTSSE..EEEEETTSEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw..lasGsdDgtvr 35 
                 q +++++ H  sv+ +a+sp+ a   la++s Dg+v 
  CCE30375.1 109 QRIYEFSQHkASVNVVAWSPHEAGclLATASSDGNVS 145
                 6788999**877**999888888876788877**996 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 4.2e-05
                 EEESS.SSEEEEEEETTSSE.......................EEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgaw.......................lasGsdDgtvriWd 38 
                 t+ +H  +v+s+      +w                       +++G+ D+ v+iW+
  CCE30375.1 158 TFPAHgLGVNSV------SWapattpgsiissaptpgsmgnrrFVTGGSDNMVKIWS 208
                 688995559999......5555445555545555555555555677877*******5 PP

  == domain 5  score: 21.7 bits;  conditional E-value: 5.7e-08
                 EEESS.SSEEEEEEETTSSE...EEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtslafspdgaw...lasGsdDgtvriW 37 
                 +l GH ++v+++a+sp       +as+s D+tvriW
  CCE30375.1 222 SLAGHgDWVRDVAWSPTVLQksyIASASQDKTVRIW 257
                 688**777****766665559999************ PP

  == domain 6  score: 13.6 bits;  conditional E-value: 2.2e-05
                 SSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  10 HssvtslafspdgawlasGsdDgtvriWd 38 
                    v+ +++s +g+ la ++ D++v +W+
  CCE30375.1 277 A--VWRVSWSLSGNVLAVSGADNKVSLWK 303
                 3..99***********96666*******6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1   0.00081       3.6      46      90 ..      34      79 ..      17      81 .. 0.77
   2 !    5.6   0.1    0.0042        19      12      64 ..      43      98 ..      41     106 .. 0.52
   3 !   24.1   0.1   7.5e-09   3.4e-05      25      90 ..     107     172 ..     102     174 .. 0.88
   4 ?    2.7   0.0     0.036   1.6e+02      30      66 ..     207     258 ..     200     265 .. 0.71
   5 !   13.8   0.7   1.2e-05     0.053      26      65 ..     263     302 ..     233     309 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00081
  ANAPC4_WD40 46 WkpdgklLavaysdgevrllda..esgkvvhslsvksekavtclgWg 90
                     g+ La   sd +v+++++  es++ +++l+ ++  av c++W+
   CCE30375.1 34 LDYYGRKLATCSSDRTVKIFEIdgESQRHIETLKGHEG-AVWCVSWA 79
                 5567999************8663377788888888888.7******7 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0042
  ANAPC4_WD40 12 latedgellvfRlng..qrvwtleedkedsevrsLaWkp..dgklLavaysdgevrl 64
                   ++d  + +f ++g  qr  ++  +++++ v +++W +   g++La +  dg+v +
   CCE30375.1 43 TCSSDRTVKIFEIDGesQRHIET-LKGHEGAVWCVSWAHpkYGNILASSGYDGKVFI 98
                 44455555555554422222222.355666666666653224677777777766655 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 7.5e-09
  ANAPC4_WD40  25 ngqrvwtleedkedsevrsLaWkpd..gklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  ++qr++++  ++++ +v+ +aW+p   g lLa a sdg+v++l+ +++ v h+   ++   v++++W+
   CCE30375.1 107 QWQRIYEF--SQHKASVNVVAWSPHeaGCLLATASSDGNVSVLEFKDTAVDHATFPAHGLGVNSVSWA 172
                  6*******..7899999999998753378*********************999888888899999996 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.036
  ANAPC4_WD40  30 wtl............eedkedsevrsLaWkp...dgklLavaysdgevrlld 66 
                  w++            + ++++  vr++aW+p   + + +a a +d +vr+  
   CCE30375.1 207 WSFdpasqsykqegeSLAGHGDWVRDVAWSPtvlQKSYIASASQDKTVRIWT 258
                  5555555555554444456788899****99444578999999999999976 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 1.2e-05
  ANAPC4_WD40  26 gqrvwtleedkedsevrsLaWkpdgklLavaysdgevrll 65 
                   +  w+ +  + +  v  ++W+ +g++Lav+ +d++v+l 
   CCE30375.1 263 TNGQWESKVLNFEAAVWRVSWSLSGNVLAVSGADNKVSLW 302
                  34445556667788999********************986 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00018       0.8     183     235 ..      22      71 ..       7      77 .. 0.76
   2 !    4.3   0.0    0.0037        17     179     212 ..     109     145 ..      95     152 .. 0.75
   3 ?    1.0   0.0     0.036   1.6e+02     187     219 ..     275     307 ..     248     315 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00018
    Ge1_WD40 183 kieehsliveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdG 235
                 +  ++ +i +a++   G  lat+s+d +vk f +   d e++r +   k h+G
  CCE30375.1  22 NSGHDDMIHDAVLDYYGRKLATCSSDRTVKIFEI---DGESQRHIETLKGHEG 71 
                 3345569***********************9998...5666777777777777 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0037
    Ge1_WD40 179 egllkieehs.liveaafspd..GtalatasedGevk 212
                 + + ++++h   +   a+sp   G  latas+dG v 
  CCE30375.1 109 QRIYEFSQHKaSVNVVAWSPHeaGCLLATASSDGNVS 145
                 4566788885478888899854499*********996 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.036
    Ge1_WD40 187 hsliveaafspdGtalatasedGevkffqvyle 219
                 ++ +   ++s  G +la++ +d +v +++ +l 
  CCE30375.1 275 EAAVWRVSWSLSGNVLAVSGADNKVSLWKENLR 307
                 356778889999*************99987766 PP

>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1    0.0011       4.8     281     388 ..      48     159 ..      18     170 .. 0.63
   2 ?    3.5   0.7     0.003        14     295     331 ..     266     303 ..     198     306 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0011
                 XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX..XXXXXXXXXXXX.XXXXXX..XXXXXXXXXXXXXXXX...XXXXXXXX.XXXXXXXXXX.XXX CS
        IKI3 281 ldvvfFErNGLrhgefslrlekeeeevqsLaWsa..dSevLavrledr.vqlwti..sNyhWYLKqelrysasegveevkWdpe.kpltLlvltesgki 373
                  +v  FE  G  ++++++ l+ +e  v  + W +   +++La + +d  v +w    +N+ W    e++ +++++v+ v W p+ ++  L  ++++g++
  CCE30375.1  48 RTVKIFEIDGESQRHIET-LKGHEGAVWCVSWAHpkYGNILASSGYDGkVFIWKEqgQNNQWQRIYEFS-QHKASVNVVAWSPHeAGCLLATASSDGNV 144
                 356677777777777777.35777777777776522477777766555577776422577775555555.44555566788777234444445555777 PP

                 XXXXXXXXXXXXXXX CS
        IKI3 374 evvdfafetavsets 388
                 +v +f  + +   t 
  CCE30375.1 145 SVLEFKDTAVDHATF 159
                 777776555555555 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.003
                 XXXXXX.XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX CS
        IKI3 295 efslrlekeeeevqsLaWsadSevLavrl.edrvqlwt 331
                 + + ++ + e+ v  + Ws +++vLav+   ++v lw 
  CCE30375.1 266 QWESKVLNFEAAVWRVSWSLSGNVLAVSGaDNKVSLWK 303
                 55555566788889999999999999966255699996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2354.31
//
Query:       CCE30376.1  [L=1193]
Description: related to growth regulation protein WHI2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-43  146.8   0.1    1.4e-42  145.9   0.1    1.4  1  CMAS             Mycolic acid cyclopropane synthetase
      7e-40  137.1   0.0    1.1e-39  136.5   0.0    1.2  1  p450             Cytochrome P450
    5.9e-10   39.2   0.0      1e-09   38.4   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    9.6e-10   39.0   0.0    2.3e-09   37.8   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    3.6e-08   34.0   0.0    9.4e-08   32.7   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    2.6e-07   31.3   0.0    5.7e-07   30.2   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.026   14.3   0.0      0.055   13.3   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
      0.061   12.9   0.0       0.14   11.7   0.0    1.5  1  MTS              Methyltransferase small domain
       0.16   11.7   0.0        0.3   10.8   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.1   6.8e-46   1.4e-42       4     272 ..     410     671 ..     407     672 .. 0.93

  Alignments for each domain:
  == domain 1  score: 145.9 bits;  conditional E-value: 6.8e-46
                 XXXHHHHHHHHTS-HHHHCTTS-TT.---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHH CS
        CMAS   4 kkevenikahYDlsndffalfldpt.mtYsCAyferddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqakla 101
                 +++++ +++hY   + f+  fld+  + Ys A f+++ ++Le+A ++K++ i+ +l+l++Gm++LdiG GWG+++++ ++r +v+v  +Tl ++ a + 
  CCE30376.1 410 RTDFRLMRSHYGRDDSFYLSFLDKRyRLYSHALFKSPTDSLEDAAENKMEAIFSQLGLQEGMHILDIGGGWGGVAQYCASR-GVRVTTITLADNGADYI 507
                 6789999****************97367*****************************************************.***************** PP

                 HHHHHTS-SSS-EEEEES-GGG---..--SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS-.--B CS
        CMAS 102 kkrvdeldlerkvevklldyedlde..kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkelaerglklkfidkeiFPgGe.lps 197
                 ++ + e dl   +ev+l d+ d d    +d+ vs+  +eh+    y +f +k+ +llk++G+l l +  + +k  ++      +f++ +i+ g +   +
  CCE30376.1 508 RNLIIENDLL--AEVRLEDFFDHDPaeLYDHAVSLASIEHM--PDYRRFARKAWDLLKPGGRLYLDGSAAVEKYDVS------AFTRDYIWRGTHtYMT 596
                 *****99976..6788888877664449************8..57************************99999999......8*******98762568 PP

                 HHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHHSHHHHHHHHHHHHHHHHHHHHTTSCEEEE CS
        CMAS 198 ieeieeeiseagftvvdveslrahYakTLkaWaealqenkdeaialvseevarmyelYLagcaeaFrkgyidvaq 272
                 ++++++e    gf++++ve   ++Y  T+ +Wa +l+e kd +ia  +ee++r+++l + g +++F+ + ++ ++
  CCE30376.1 597 VQDVVAELLYHGFELLRVEGETKDYHLTVLEWARRLEESKDAIIAGWGEETYRVFRLMMWGGQHSFKVNALQAYH 671
                 899*****************************************************************9998776 PP

>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.0   5.6e-43   1.1e-39     235     407 ..      17     186 ..       3     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 136.5 bits;  conditional E-value: 5.6e-43
                 SCSSCSHHHHHHHHC..TTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHH CS
        p450 235 kksrrdfldalllak..kekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEt 331
                 k+s   +++ l +++  +e+ +e+ lsd  +a + ++l+faGvdTt+++l++ +y  ++   ++++l +E+ +   d    ++d+l++lp+l  vi+Et
  CCE30376.1  17 KESSQRGIKTLFSEMlpQEYTQEQPLSDMVIALESINLIFAGVDTTATALTYLIYAVLQEDAIKQELVHELASCSDD---ASWDELEQLPFLHGVIQET 112
                 4455566666666667656666679*********************************************9999988...57***************** PP

                 HHHSCSSTTEEEEESSS.CEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEE CS
        p450 332 LRlhpvvplllpRevtk.dvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGa 407
                 LRl+p+vp +l Rev+     ++gy++p+G++v   +y+lhrdp++++nPe+F p R+ + +      + af+PFG 
  CCE30376.1 113 LRLYPPVPATLRREVPPeGALLGGYMMPAGITVGAQAYTLHRDPAIWDNPERFEPRRWTNPTP---DMNAAFMPFGG 186
                 ***************874677777*************************************76...689******96 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   5.2e-13     1e-09       9     119 ..     458     570 ..     438     611 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 5.2e-13
  Methyltransf_23   9 lsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae..........kakkaqkdqfdeqeaaepqgkfdlIvlrevl 92 
                      + +   +l+  l++g+ +LdiG G G ++++++ +g+ vt + l ++  + ++          + +   +  +      +p++ +d +v+  ++
       CCE30376.1 458 MEAIFSQLG--LQEGMHILDIGGGWGGVAQYCASRGVRVTTITLADNGADYIRnliiendllaEVRLEDFFDH------DPAELYDHAVSLASI 543
                      333334444..89999********************9888888888777777777777776666666666666......8************** PP

  Methyltransf_23  93 ehvpdppellrqiatllkpgGylllse 119
                      eh+pd+ +  r++++llkpgG+l+l  
       CCE30376.1 544 EHMPDYRRFARKAWDLLKPGGRLYLDG 570
                      ***********************9965 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.1e-12   2.3e-09       1      95 [.     474     567 ..     474     568 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.1e-12
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      Ld+G G G +a+++a+rg rv+++ l+++  ++ ++ + e++l  e++ +d+ +   + + +D  vs  +++h++d +++ ++++ +LkpgG+l
       CCE30376.1 474 LDIGGGWGGVAQYCASRGVRVTTITLADNGADYIRNLIIENDLLAEVRLEDFFDH-DPAELYDHAVSLASIEHMPDYRRFARKAWDLLKPGGRL 566
                      8*****************************************9889999999995.46789********************************9 PP

                      E CS
  Methyltransf_11  95 v 95 
                      +
       CCE30376.1 567 Y 567
                      7 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   4.7e-11   9.4e-08       1      97 []     473     564 ..     473     564 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 4.7e-11
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      +Ld+G G G +++++a r+   +vt + ++++  +++r+ + e++l +e++  d+ d + +++ +D  vs  +++h++  d++++ ++++++Lk
       CCE30376.1 473 ILDIGGGWGGVAQYCASRG--VRVTTITLADNGADYIRNLIIENDLLAEVRLEDFFDHD-PAELYDHAVSLASIEHMP--DYRRFARKAWDLLK 561
                      8*****************5..**********************************9987.5569******777***87..899*********** PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       CCE30376.1 562 PGG 564
                      **9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   2.8e-10   5.7e-07       1      99 []     474     566 ..     474     566 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2.8e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L+iG+G G ++++++ +  ++++t + +  +  +  ++ + +++       e++ +d +d+d+ + +D  v++  ++h++d r++ +++ +lLk
       CCE30376.1 474 LDIGGGWGGVAQYCASR--GVRVTTITLADNGADYIRNLIIENDL----LAEVRLEDFFDHDPAELYDHAVSLASIEHMPDYRRFARKAWDLLK 561
                      8****************..88888888888888444555555554....55555556677788889**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgGrl
       CCE30376.1 562 PGGRL 566
                      ***97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.8e-05     0.055       2     119 ..     468     578 ..     467     630 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-05
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkile 95 
                      ++g+++lD+G G G  +   a++     ++++ D+ ++ i+    +  +  l  +e++ +d+++ + +   e +D  +s + + +++d   + +
       CCE30376.1 468 QEGMHILDIGGGWGGVAQYCASRGVRVTTITLADNGADYIRNLIIE--NDLL--AEVRLEDFFDHDPA---ELYDHAVSLASIEHMPDYRRFAR 554
                      6799*****************98777788***********998884..4455..69999*****6643...77********************* PP

  Methyltransf_31  96 eiervlkpggilliedprllaelp 119
                      ++ ++lkpgg+l ++   + ++++
       CCE30376.1 555 KAWDLLKPGGRLYLDGSAAVEKYD 578
                      ************998777555554 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.1e-05      0.14      28     137 ..     466     568 ..     453     575 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.1e-05
                 HCCTCSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHHHHHHHH CS
         MTS  28 pkelsgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsNPPfhagkatelavaeeliaeA 125
                   ++  ++lD+G G+G ++  +a++  +++ +tl d+ a      ++ + +n+l +ev+ +d +++ + + +d+ vs   + +  +      +++ ++A
  CCE30376.1 466 GLQEGMHILDIGGGWGGVAQYCASRGVRVTtITLADNGAD---YIRNLIIENDLLAEVRLEDFFDHDPAELYDHAVSLASIEHMPD-----YRRFARKA 556
                 4556778*****************9999777888887765...5567788999999999999999999999999999877776666.....88999999 PP

                 HHHEEEEEEEEE CS
         MTS 126 keaLkegGeLli 137
                  + Lk+gG+L++
  CCE30376.1 557 WDLLKPGGRLYL 568
                 999999999975 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015       0.3      55      96 ..     452     493 ..     428     516 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
                 EE--HHHHHHHHHHTT--TT-EEEEES-TTSHHH.HHHHHHHC CS
        PCMT  55 tiSaphmvalalellelkkgarvLevGsGsGylt.avlarlvg 96 
                    + +m a++ + l l++g+++L++G+G G  +  + +r v+
  CCE30376.1 452 DAAENKMEAIFSQ-LGLQEGMHILDIGGGWGGVAqYCASRGVR 493
                 5555667776655.79*************87544146666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.42
# Mc/sec: 8465.81
//
Query:       CCE30377.1  [L=216]
Description: related to benzoate 4-monooxygenase cytochrome P450 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-14   52.5   0.0    3.8e-14   52.3   0.0    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   2.1e-18   3.8e-14      12     170 ..      49     204 ..      38     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 2.1e-18
                 CHHHHTT.TCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHHHHHHHHHHTS CS
        p450  12 nllqlgr.keelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkklRrfltptlts 108
                  +l++++ ++++ +++++l+++ygp++r+ + +   v +s+ ++v+++   ++ + ++ +++ ++++   p++ +  +fa + +++ + Rr l +   +
  CCE30377.1  49 LILKINTlRGQRTRYIHSLHQQYGPFVRVAPRE---VSISDLDSVRQIHRIGTPFRKAAWYKEVTRQ---PPDDQCTVFAIQdPRKASARRKLFQRSAT 141
                 4567777899*******************9987...77899999***99999999999999999998...55555555554448888888888888887 PP

                 H.STTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHH CS
        p450 109 f.gklsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledekl 170
                     +++e++v + a+  v+k++k+++++++ d++++ s +a dv++s++Fg+++ ++e+ + 
  CCE30377.1 142 RaAVQQWEPVVAQLANLTVQKIKKDVSAKGSADVAKWWSMMAADVLTSLAFGESYRIVETGQV 204
                 845559*************************************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1563.87
//
Query:       CCE30378.1  [L=430]
Description: uncharacterized protein CPUR_04226 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-18   67.8   0.0    1.6e-18   67.3   0.0    1.2  1  Galactosyl_T  Galactosyltransferase


Domain annotation for each model (and alignments):
>> Galactosyl_T  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   8.7e-23   1.6e-18       1     187 [.     111     291 ..     111     296 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 8.7e-23
  Galactosyl_T   1 arRnaiRktWmnekeaegnriktlFlvGlsakedkkvkelvmeeaklygDivvvdl..edsYenltlKtltlllwavskvpeaklilkvDdDvyvnp 95 
                   +rR  iR+tWm     + +    +F+v ++    + ++  v  e++++gDi+v+d+  ed  + +t+Ktl + +w     ++++++ k D+D+++n+
    CCE30378.1 111 ERRMLIRSTWMRLF--RHVPFVPRFVVSNPG--PGWIET-VRYENRTFGDIIVLDHlvEDDVTANTVKTLEFYQWLLRSGQRYEFVTKLDTDLWLNA 202
                   59*********988..68999******9999..677776.999************6558************************************** PP

  Galactosyl_T  96 dkLlsllkrelidpsessvygkvlkegavirkkkskwyvseeeykfsryppyasGtlYvlsreavekllkaskhrkflkleDvlvGilaedl 187
                   + + + +      + ++s   +  ++ ++++    +  + + +++ s y ++a G++Y +++++++ l+  + + ++++ eD+ vGil++++
    CCE30378.1 203 PAFWQRYLLP---RLSNSSSSESDSDSSTYAASVNRTVIGQLYFSDSGYNTFAHGSMYTMTWDMIQLLVTLQDRYQVVTGEDAAVGILMHKA 291
                   *998877766...555666666667777888888888899999999******************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3163.04
//
Query:       CCE30379.1  [L=299]
Description: uncharacterized protein CPUR_04227 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-16   59.3   0.0    5.9e-16   58.7   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    1.5e-09   38.5   0.0    5.2e-09   36.7   0.0    2.0  2  Methyltransf_25  Methyltransferase domain
    2.2e-08   34.6   0.0    5.8e-08   33.3   0.0    1.7  2  Methyltransf_11  Methyltransferase domain
    3.5e-06   26.9   0.0    0.00015   21.6   0.0    2.3  1  Methyltransf_31  Methyltransferase domain
    0.00028   21.6   0.0     0.0014   19.3   0.0    2.1  1  Methyltransf_12  Methyltransferase domain
     0.0031   17.1   0.0     0.0052   16.3   0.0    1.3  1  MTS              Methyltransferase small domain
     0.0039   16.9   0.0     0.0057   16.4   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
      0.013   15.6   0.0       0.54   10.3   0.0    2.1  2  FtsJ             FtsJ-like methyltransferase
      0.058   12.7   0.0       0.14   11.5   0.0    1.7  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0     3e-19   5.9e-16      15     125 ..      97     216 ..      76     258 .. 0.75

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 3e-19
  Methyltransf_23  15 rllpk.lraggrvLdiGcGtG.illevlrengf..svtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellr 103
                      +l+p  + +  rvLdiG+GtG +l  ++++++   sv+g Dlsp + ++++ + ++ ++d +   e++ ++++fd+++ r+  + ++d++ l++
       CCE30379.1  97 FLAPLeKHKLHRVLDIGTGTGrYLGIEFADQFPnaSVIGTDLSPCQPQWIPpNVRFEIDDAT--LEWTWNDNYFDFMHIRYIVGGIQDWTGLFK 188
                      44543245566**********778889999987779*************9666666666666..5777899*********************** PP

  Methyltransf_23 104 qiatllkpgGylllseplasl......k 125
                       ++++++pgG+++  e++ +       +
       CCE30379.1 189 EAFRCCAPGGWVESVEIDPEFcsddgtA 216
                      ***************9876655555552 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.8   1.2e+04      52      71 ..      18      37 ..       5      49 .. 0.68
   2 !   36.7   0.0   2.6e-12   5.2e-09       1      97 []     109     198 ..     109     198 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.8
                     ESBCCGBSSSTTTEEEEEEE CS
  Methyltransf_25 52 qgdaedlpfedgsfDlvvss 71
                        aed p + +  D v+s 
       CCE30379.1 18 LVAAEDAPADPSDADSVFSE 37
                     45567778888888888874 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 2.6e-12
                      EEEET-TTSHHH.HHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrlt.lalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      vLd+G+GtGr++ +++a+++++a+v+g+D+s+ + + +        +nv+f+  da  ++  +d+ fD++++++ +     +d+  ++ke++r+
       CCE30379.1 109 VLDIGTGTGRYLgIEFADQFPNASVIGTDLSPCQPQWIP-------PNVRFEIDDAtLEWTWNDNYFDFMHIRYIVGG--IQDWTGLFKEAFRC 193
                      9********966599*****99**********9987653.......5779***9*97789************866554..569*********** PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      + pgG
       CCE30379.1 194 CAPGG 198
                      ****9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         9   1.8e+04      49      68 ..      18      37 ..       6      42 .. 0.71
   2 !   33.3   0.0   2.9e-11   5.8e-08       1      94 [.     110     200 ..     110     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9
                     TEECCCTSS-TT-EEEEEEE CS
  Methyltransf_11 49 vadaeklpfednsfDlvvss 68
                        ae+ p   +  D v+s 
       CCE30379.1 18 LVAAEDAPADPSDADSVFSE 37
                     45677778888888888875 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 2.9e-11
                      EEET-TTSHHHH.HHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlae.alakrg..arvvgvDlskemlklakekaseeglkvefvvadae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      Ld+G+GtGr++  ++a+++  a+v+g+Dls+ + ++          +v+f   da+ +   +dn+fD+  ++  +  ++d+  ++ke+ R++ p
       CCE30379.1 110 LDIGTGTGRYLGiEFADQFpnASVIGTDLSPCQPQWIPP-------NVRFEIDDATlEWTWNDNYFDFMHIRYIVGGIQDWTGLFKEAFRCCAP 196
                      8*********9725668889*************988832.......35666666664469********************************** PP

                      EEEE CS
  Methyltransf_11  91 gGll 94 
                      gG++
       CCE30379.1 197 GGWV 200
                      **85 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   7.5e-08   0.00015       2     112 ..     104     205 ..     103     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7.5e-08
  Methyltransf_31   2 dkglrvlDlGCGtGe.ltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdki 93 
                      +k  rvlD+G+GtG+ l++e+a   +p+a v+G D s+   +            nv+Fe+ d++      ++d+ fD+++ + ++  + d    
       CCE30379.1 104 HKLHRVLDIGTGTGRyLGIEFA-DQFPNASVIGTDLSPCQPQWIPP--------NVRFEIDDATLeWT--WNDNYFDFMHIRYIVGGIQDWTGL 186
                      67789*********62567888.779**********9965443333........999****9999444..999******999999999999999 PP

  Methyltransf_31  94 leeiervlkpggilliedp 112
                      ++e++r   pgg + + ++
       CCE30379.1 187 FKEAFRCCAPGGWVESVEI 205
                      9999999999997765555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   7.1e-07    0.0014       1      99 []     110     200 ..     110     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 7.1e-07
  Methyltransf_12   1 LeiGcGtGsll.ralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklL 93 
                      L+iG+GtG++l  ++++++p+++++g+D+sp +         ++++  n ++e+++  l+ +   ++fD  ++   +  ++d+  +++++ +++
       CCE30379.1 110 LDIGTGTGRYLgIEFADQFPNASVIGTDLSPCQP--------QWIP-PNVRFEIDDATLEWTWNDNYFDFMHIRYIVGGIQDWTGLFKEAFRCC 194
                      8*******97636788888************999........6664.3444555545444444448**************************** PP

  Methyltransf_12  94 kpgGrl 99 
                      +pgG++
       CCE30379.1 195 APGGWV 200
                      ****85 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.6e-06    0.0052      21      64 ..      95     139 ..      92     170 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.6e-06
                 HHHHHHCHCCTCSEEEEET-TTS.HHHHHHHHHTTC.EEEEEESB CS
         MTS  21 klLletlpkelsgkvlDlGcGaG.vlgaalakespeaevtlvdvd 64 
                 +l+l  l+k++ ++vlD+G+G+G +lg+++a++ p+a+v  +d +
  CCE30379.1  95 QLFLAPLEKHKLHRVLDIGTGTGrYLGIEFADQFPNASVIGTDLS 139
                 689999****999**********88*************9998876 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.8e-06    0.0057      27      91 ..      83     152 ..      78     178 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.8e-06
  Methyltransf_16  27 vlvkylekklake...lganelsklsvlELGsGtG.lvGlavaellpeakviltDleelle.llkkniel 91 
                      ++ +yl+    ++    + ++ +  +vl++G GtG   G+ +a + p+a+vi tDl+  ++  +  n+  
       CCE30379.1  83 LSHHYLTILFDDQlflAPLEKHKLHRVLDIGTGTGrYLGIEFADQFPNASVIGTDLSPCQPqWIPPNVRF 152
                      55667776555557766667888899*********668******************99654156666665 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00027      0.54      20      72 ..     104     159 ..      77     172 .. 0.81
   2 ?    3.1   0.0     0.045        89      29      38 ..     193     202 ..     190     223 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00027
                 -TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...TTEEEECS-CCC CS
        FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...pgvttiqgditd 72 
                 ++ ++v+D+g ++G +  +      +++ v++ Dl p++p    p+v++   d t 
  CCE30379.1 104 HKLHRVLDIGTGTGRYLGIEFADQFPNASVIGTDLSPCQPQwipPNVRFEIDDATL 159
                 35689***********877554433469**********998889999998777775 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.045
                 T-TTSHHHHH CS
        FtsJ  29 gaaPGgwsqv 38 
                 ++aPGgw + 
  CCE30379.1 193 CCAPGGWVES 202
                 9******975 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     7e-05      0.14     108     154 ..     159     205 ..      99     212 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7e-05
                      TT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 108 eeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlef 154
                       e   +d+ fD++ + + +  + D +  +kea+r   pGG +  +e+
       CCE30379.1 159 LEWTWNDNYFDFMHIRYIVGGIQDWTGLFKEAFRCCAPGGWVESVEI 205
                      4667899**********************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2137.47
//
Query:       CCE30380.1  [L=697]
Description: related to growth regulation protein WHI2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-39  134.2   0.4    5.1e-39  132.0   0.4    2.3  1  DUF1604    Protein of unknown function (DUF1604)
    1.6e-06   27.9   1.8    6.8e-06   25.9   0.9    2.4  2  G-patch    G-patch domain
    0.00022   21.2   0.1    0.00022   21.2   0.1    3.7  5  G-patch_2  G-patch domain


Domain annotation for each model (and alignments):
>> DUF1604  Protein of unknown function (DUF1604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.4   8.5e-43   5.1e-39       2      82 ..      38     123 ..      37     126 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 8.5e-43
     DUF1604   2 vpvwkqevtdekgrrrlhGAftGGfsaGyfntVGskeGwtPstfkSsrkerakk.....akkqrvedfmDeedleeleeskkletk 82 
                 +p+wkqev+dekgrrrlhGAftGG+saGyfntVGskeGwtPstf+Ssr++++k+     + +qr+e++mDeedl++++e+++l++ 
  CCE30380.1  38 LPLWKQEVRDEKGRRRLHGAFTGGWSAGYFNTVGSKEGWTPSTFVSSRTNKQKDgatpaTIQQRAEEYMDEEDLADAAEAQTLQIG 123
                 799*****************************************************99999********************99976 PP

>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.9   1.1e-09   6.8e-06       3      23 ..     153     173 ..     151     179 .. 0.85
   2 ?   -0.9   0.0      0.26   1.6e+03      34      44 ..     207     217 ..     202     218 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.1e-09
     G-patch   3 niGvkmLqkmGWkpGqGLGkk 23 
                  +G ++L+kmGWk GqG+G k
  CCE30380.1 153 TKGLQLLRKMGWKDGQGIGPK 173
                 69*****************76 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.26
     G-patch  34 kikkdraGlGa 44 
                 + k+dr+GlG+
  CCE30380.1 207 TAKTDRKGLGH 217
                 67899****97 PP

>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.91   5.4e+03      26      51 ..      75     103 ..      75     106 .. 0.54
   2 ?   -2.9   0.1       1.3   7.8e+03      52      60 ..     126     134 ..     116     135 .. 0.82
   3 !   21.2   0.1   3.7e-08   0.00022      18      58 ..     155     218 ..     152     221 .. 0.84
   4 ?    0.5   0.0      0.11   6.5e+02      38      57 ..     247     272 ..     232     276 .. 0.72
   5 ?   -2.8   0.0       1.2   7.1e+03      26      41 ..     369     395 ..     369     408 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.91
   G-patch_2  26 GWkegqgigknkkgr...vkpeepkrRpg 51 
                 GW++++ +++  +++    +p+ +++R++
  CCE30380.1  75 GWTPSTFVSSRTNKQkdgATPATIQQRAE 103
                 67755544443333333457777777775 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.3
   G-patch_2  52 rlGLGakpa 60 
                 ++GLGa++a
  CCE30380.1 126 FAGLGASTA 134
                 78****875 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 3.7e-08
   G-patch_2  18 GaAlLrGMGWkegqgigknkkgr.......................vkpeepkrRpgrlGLGak 58 
                 G +lLr MGWk+gqgig +   +                        + ++++ +++r GLG++
  CCE30380.1 155 GLQLLRKMGWKDGQGIGPKVRRNarlelgnnapepdattymfapddSQVVHFTAKTDRKGLGHQ 218
                 899***************9877788888888888888888888888888888888888888876 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.11
   G-patch_2  38 kgr......vkpeepkrRpgrlGLGa 57 
                 +g+       + ++ k+R+g  G G+
  CCE30380.1 247 QGNglslfgNDKKKTKPRAGAFGVGV 272
                 333446666789999********997 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 1.2
   G-patch_2  26 GWkegqgigknkkgr...........v 41 
                 GWk++ + + +  ++            
  CCE30380.1 369 GWKASRDTSAKDGSSstytstadaakA 395
                 888666665554443445444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 5275.74
//
Query:       CCE30381.1  [L=1244]
Description: related to serine/threonine-specific protein kinase KIN1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-70  237.5   0.0    3.3e-70  236.5   0.0    1.6  1  Pkinase        Protein kinase domain
    2.5e-39  135.1   0.0    6.4e-39  133.8   0.0    1.6  1  Pkinase_Tyr    Protein tyrosine kinase
    9.9e-20   70.1   0.1      2e-19   69.1   0.1    1.5  1  KA1            Kinase associated domain 1
      8e-07   28.3   0.0    1.4e-06   27.5   0.0    1.3  1  Haspin_kinase  Haspin like kinase domain
    1.9e-05   24.1   0.1    4.2e-05   23.0   0.1    1.5  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00018   20.9   0.0    0.00045   19.6   0.0    1.7  1  Kinase-like    Kinase-like
  ------ inclusion threshold ------
      0.015   15.3   0.0      0.015   15.3   0.0    2.9  3  APH            Phosphotransferase enzyme family
      0.072   12.7   0.9       0.14   11.8   0.0    1.8  2  RIO1           RIO1 family
        0.1   12.1   0.0       0.25   10.9   0.0    1.6  1  YrbL-PhoP_reg  PhoP regulatory network protein YrbL


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.5   0.0   1.6e-73   3.3e-70       4     264 .]     328     588 ..     325     588 .. 0.91

  Alignments for each domain:
  == domain 1  score: 236.5 bits;  conditional E-value: 1.6e-73
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH............HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke............kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle 90 
                  +++G Gs+GkV  a++++ +++vA+K++ + ++++ ++             +++rE +i+  l+hp+i+ + +v++++ + y+++eyv+gg++ d++ 
  CCE30381.1 328 GKTIGAGSMGKVKLARKEDGSEQVACKIVPRGSTEEHQTradkeradqskeIRTAREAAIVTLLNHPHICGMRDVVRTNYHWYMLFEYVNGGQMLDYII 426
                 689**************************88777766666777788888778899**************************************999999 PP

                 HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHH CS
     Pkinase  91 rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGvily 188
                  +g+l+e++a+k+ +qi+++l+y+H+++i+HrDlK eNiLi+++g++Ki+DFGl++ ++ + +l++f+g+ ++ APE+l+++ y +++vD+Ws G++ly
  CCE30381.1 427 SHGKLKEKQARKFSRQIASALDYCHRNSIVHRDLKIENILISKTGDIKIIDFGLSNLFSPRGHLKTFCGSLYFAAPELLQARAYtGPEVDIWSFGIVLY 525
                 9*******************************************************************************999999************* PP

                 HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 189 elltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  l++gk pf  +++    +++++            k  ++ +s +s+e+k+ll+++l  dpk+R t++e++ hp++
  CCE30381.1 526 VLVCGKVPFD-DQSMPALHAKIK------------KGLVDYPSWLSSECKQLLSRMLVTDPKQRATMQEVMTHPWM 588
                 **********.333332333333............3456778889******************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   3.2e-42   6.4e-39       3     257 ..     327     584 ..     325     585 .. 0.86

  Alignments for each domain:
  == domain 1  score: 133.8 bits;  conditional E-value: 3.2e-42
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST.............TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEB CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke.............eateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGd 87 
                  lgk++G+G+ GkV  ++ +    + +++Va K++ +             +a+++++ +  +ea+i + l+hp+i  +  v+  + + ++++eyv+gG+
   CCE30381.1 327 LGKTIGAGSMGKVKLARKE----DGSEQVACKIVPRgsteehqtradkeRADQSKEIRTAREAAIVTLLNHPHICGMRDVVRTNYHWYMLFEYVNGGQ 420
                  689************9998....566666766664311112222221114445555567789************************************ PP

                  HHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.H CS
  Pkinase_Tyr  88 LlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkft.s 184
                  +l+++ ++   kl+ k+  +f+ q+A++++y +++++vHrdl   N+L+s++  +ki DfGL++     +   + ++   ++ + apE l+++ +t  
   CCE30381.1 421 MLDYIISH--GKLKEKQARKFSRQIASALDYCHRNSIVHRDLKIENILISKTGDIKIIDFGLSNLF---SPRGHLKTFCGSLYFAAPELLQARAYTgP 513
                  *******9..9******************************************************9...333334455678899**********9945 PP

                  HHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 185 ksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  + D+WsfG++l+ +++ g+ p+ + +   + +k+k+g  ++ p+  ++e ++l+++ + +dp++R+t++e+++
   CCE30381.1 514 EVDIWSFGIVLYVLVC-GKVPFDDQSMPALHAKIKKGL-VDYPSWLSSECKQLLSRMLVTDPKQRATMQEVMT 584
                  89**********9998.************999999885.7999**************************9975 PP

>> KA1  Kinase associated domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.1     1e-22     2e-19       3      45 .]    1202    1244 .]    1201    1244 .] 0.98

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 1e-22
         KA1    3 vkFEievcKlpelslygvrfkRlsGdtwqYkrlasqilseLkL 45  
                  + FEi+++K+p+lsl+g++fkR+ G+twq+k++a+qil++L+L
  CCE30381.1 1202 LEFEIFIVKVPLLSLHGIQFKRMTGNTWQFKNMADQILRDLRL 1244
                  68****************************************8 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     7e-10   1.4e-06     121     257 ..     344     484 ..     313     494 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 7e-10
  Haspin_kinase 121 e..kdkevvlKviplevledvtis.kelslkelkslklvkgtypglllllqdkvlkekpdfyseqql.flvlllkdkGtdLeev....klkswkqa 208
                    +   +++v++K++p +  e+ ++     +  ++k+++  + +   ++ll + ++   + d+++++ + +++ +  ++G+ L+ +    klk  kqa
     CCE30381.1 344 KedGSEQVACKIVPRGSTEEHQTRaDKERADQSKEIRTAREA-AIVTLLNHPHICGMR-DVVRTNYHwYMLFEYVNGGQMLDYIishgKLK-EKQA 436
                    4336799*************9999778889************.888888899999998.77776655155666778899888776543554.489* PP

  Haspin_kinase 209 lsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                     +   qi++ L     +    HRdL+++niL+ k++ + +id+ ls l 
     CCE30381.1 437 RKFSRQIASALDYCHRN-SIVHRDLKIENILISKTGDIKIIDFGLSNLF 484
                    ***********998655.889**********************999775 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   2.1e-08   4.2e-05      88     167 ..     405     479 ..     364     488 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.1e-08
         Kdo  88 leyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                  +y+  +l e ++g q L+ ++  + +l+e+  r+  ++++ +    hr  + H+dl + nil+ +++     i +iD+ 
  CCE30381.1 405 TNYHWYMLFEYVNGGQMLDYIIS-HGKLKEKQARKFSRQIASALDYCHRNSIVHRDLKIENILISKTG----DIKIIDFG 479
                 458889999*******9999998.688****************************************9....99999995 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.3e-07   0.00045     158     260 ..     448     545 ..     420     576 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.3e-07
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltla 253
                   + + + +vh +++ +n+l  + g +++ +f+       ++ l + +    fa pEll +r+            ++d W  G+v y + c k+P++ +
   CCE30381.1 448 DYCHRNSIVHRDLKIENILISKTGDIKIIDFGLSNLFSPRGHLKTFCgsLYFAAPELLQARAY--------TGPEVDIWSFGIVLYVLVCGKVPFDDQ 537
                  5678899***********************9887777888888788866779******99554........5579********************976 PP

  Kinase-like 254 t.eeakee 260
                    +  + +
   CCE30381.1 538 SmPALHAK 545
                  41444444 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   1.1       5.4   1.1e+04     128     146 ..     154     174 ..     129     207 .. 0.37
   2 ?   15.3   0.0   7.3e-06     0.015     147     196 ..     438     481 ..     363     484 .. 0.79
   3 ?   -1.8   0.5       1.2   2.3e+03     112     162 ..     730     780 ..     724     810 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 5.4
                 HHHCHHH.CCCGCCTCC.HHH CS
         APH 128 qlesata.rllaselld.lle 146
                 +  s++  rll+ +l++  ++
  CCE30381.1 154 FASSSHLkRLLPQQLQQqQQQ 174
                 333332222222222221111 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 7.3e-06
                 HHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 147 eleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 ++ +q++ al+       + +++H+Dl+  N+l+ ++++    +iDf+++
  CCE30381.1 438 KFSRQIASALDYC----HRNSIVHRDLKIENILISKTGDIK--IIDFGLS 481
                 4445433333333....369***************555554..****976 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.2
                 TTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S CS
         APH 112 alpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallpg 162
                 +++ +++ ++ +e +r +e+++   + +e + l+ + +eqv++a+++l+++
  CCE30381.1 730 SAGSSREKDKVREKEREREREKEKEREREKDRLRGRDREQVADAVPELAAP 780
                 555556666666666677777543333333336888888899998888875 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.9e-05      0.14      51     150 ..     377     479 ..     347     482 .. 0.69
   2 ?   -3.2   0.1       2.7   5.5e+03      12      49 ..     643     683 ..     635     685 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
                 HHHHHHHHHHHHHHHHHTT.--S--EEEEETT.EEEEE--EETTEEGGBHHHCG.-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEE CS
        RIO1  51 vklwaekEfrnLkrleeag.vpvPkpielkrh.vlvmefigedgvaapklkdve.eeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvv 145
                  ++ + +E ++ + l++ +   + +++  + h  ++ e+++  ++  + +++ + +e++a++  +++ ++     +++ +vH DL   N+l+++  ++ 
  CCE30381.1 377 KEIRTAREAAIVTLLNHPHiCGMRDVVRTNYHwYMLFEYVNGGQMLDYIISHGKlKEKQARKFSRQIASA-LDYCHRNSIVHRDLKIENILISKTgDIK 474
                 4455556666666665554244556777777734678899866666666777775577777777777775.555669***************9998*** PP

                 E--GT CS
        RIO1 146 iIDvs 150
                 iID++
  CCE30381.1 475 IIDFG 479
                 ***96 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.7
                 EEEEEEE-S--...-SS-HHHHCTTTSTTSTCG--GS-HHH CS
        RIO1  12 evaiKiyktst...teFkkrkkyvsgekrfkdrksktnprk 49 
                 + a+K+y+ ++   t  k+ +k++   ++f +r++++n r+
  CCE30381.1 643 QQAVKLYQRERelpTPAKETEKKRGFGFDFYKRRNSSNSRD 683
                 67899998887222346677788888888888888887775 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.25      86     164 ..     402     475 ..     353     495 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
  YrbL-PhoP_reg  86 lvqTdlGlGlvvekirdadGnvaktLedlvkkeelta....elkeaLdefleelldnhivtndlsakNivvkknsegeeelvl 164
                    +v T+    +++e +++ +      L +++++++l++    +  +++   l+++  n iv +dl+++Ni++ k    +    +
     CCE30381.1 402 VVRTNYHWYMLFEYVNGGQ-----MLDYIISHGKLKEkqarKFSRQIASALDYCHRNSIVHRDLKIENILISKTGDIK----I 475
                    5555555555555555443.....556666555555411115667888999*******************99876544....4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1298  (0.0723967); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.45
# Mc/sec: 8350.21
//
Query:       CCE30382.1  [L=436]
Description: probable rcd1 protein involved in sexual development [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.5e-125  417.8   5.2   2.4e-125  417.1   5.2    1.3  1  Rcd1            Cell differentiation family, Rcd1-like
    2.4e-05   24.5  69.7      4e-05   23.8  69.7    1.3  1  TFIIA           Transcription factor IIA, alpha/beta subunit
     0.0031   16.7  28.3     0.0045   16.1  28.3    1.3  1  LAP1C           Lamina-associated polypeptide 1C (LAP1C)
     0.0051   15.6  20.9      0.009   14.7  20.9    1.4  1  Ndc1_Nup        Nucleoporin protein Ndc1-Nup
     0.0056   15.9  39.3     0.0085   15.4  39.3    1.3  1  Sin_N           Sin-like protein conserved region
  ------ inclusion threshold ------
      0.023   13.0  60.7      0.031   12.6  60.7    1.0  1  PAT1            Topoisomerase II-associated protein PAT1
      0.072   11.5   1.9      0.079   11.3   1.9    1.3  1  Mem_trans       Membrane transport protein
       0.12   11.1  40.7       0.18   10.6  40.7    1.2  1  Presenilin      Presenilin
       0.13   11.9  29.0       0.17   11.5  29.0    1.1  1  DUF4045         Domain of unknown function (DUF4045)
       0.14   11.1  38.6       0.21   10.6  38.6    1.3  1  eIF-3_zeta      Eukaryotic translation initiation factor 3 su
        0.4   10.4  29.1       0.65    9.7  29.1    1.4  1  DUF1387         Protein of unknown function (DUF1387)
       0.49   10.5  40.8       0.71   10.0  40.8    1.2  1  CCSAP           Centriole, cilia and spindle-associated
       0.82    7.9  29.0        1.1    7.5  29.0    1.1  1  CDC45           CDC45-like protein
        1.2    9.4   3.9        1.3    9.3   0.0    2.4  2  CnrY            Anti-sigma factor CnrY
        1.4    8.9  28.6        2.9    7.9  28.6    1.5  1  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr
        2.1    7.3  20.8          4    6.4  20.8    1.5  1  Membralin       Tumour-associated protein
        2.1    8.3  34.7        3.9    7.4  34.7    1.3  1  FAM60A          Protein Family FAM60A
        2.1    6.3  42.6        2.8    5.9  42.6    1.1  1  AF-4            AF-4 proto-oncoprotein
        2.4    7.7  29.8        3.7    7.1  29.8    1.2  1  DUF572          Family of unknown function (DUF572)
        2.5    6.7  35.5        3.6    6.3  35.5    1.1  1  Caldesmon       Caldesmon
        2.6    8.2  39.7        4.7    7.4  39.7    1.5  1  PNISR           Arginine/serine-rich protein PNISR
        3.6    6.3  29.7        6.7    5.4  29.7    1.5  1  NPR3            Nitrogen Permease regulator of amino acid tra
        3.6    7.2  24.2        5.1    6.7  24.2    1.2  1  CAC1F_C         Voltage-gated calcium channel subunit alpha, 
        3.7    7.4  32.0        6.5    6.6  32.0    1.4  1  SRP-alpha_N     Signal recognition particle, alpha subunit, N
        3.7    7.3  38.3        6.6    6.5  38.3    1.4  1  RR_TM4-6        Ryanodine Receptor TM 4-6
        5.2    5.6  33.3        6.9    5.2  33.3    1.1  1  Hamartin        Hamartin protein
        6.7    6.4  32.9         12    5.5  32.9    1.4  1  AAA_11          AAA domain
        6.8    5.6  39.1         10    5.0  39.1    1.2  1  SLC12           Solute carrier family 12
        7.8    5.3  28.1         13    4.6  28.1    1.3  1  PA26            PA26 p53-induced protein (sestrin)


Domain annotation for each model (and alignments):
>> Rcd1  Cell differentiation family, Rcd1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.1   5.2  3.9e-128  2.4e-125       1     259 []     163     421 ..     163     421 .. 0.99

  Alignments for each domain:
  == domain 1  score: 417.1 bits;  conditional E-value: 3.9e-128
        Rcd1   1 lildlakpekreeaLleLskkresvedlallLwesfgtvaaLLqeivsiYpllspptltaaesnrvcnaLallqcvashpetrklflkakiplyLypfL 99 
                 +i dl ++++re aLleLskkre+v++lal+Lw+sfg+++ LLqei+s+Y ll+p++ltaa+snrvcnaLallqcvash+etr+lfl+a+ipl+LypfL
  CCE30382.1 163 YIADLLNEKTREAALLELSKKREQVPELALILWHSFGVMTSLLQEIISVYTLLNPSQLTAAASNRVCNALALLQCVASHNETRTLFLNAHIPLFLYPFL 261
                 599************************************************************************************************ PP

        Rcd1 100 nttsksrefEylRltsLgvigaLvktddkevikflldteivplclrimesGselsktvAtfIlqkiLlddeGLeYicqtaerfsavaevLnkmvvslte 198
                 nttsksr+fEylRltsLgvigaLvk+d+++vi+fll+tei+plclrime+GselsktvA+fI+qkiLldd+GL+Yic+t+erf+av +vL++mv +l+e
  CCE30382.1 262 NTTSKSRPFEYLRLTSLGVIGALVKNDSSDVINFLLTTEIIPLCLRIMETGSELSKTVAIFIVQKILLDDNGLNYICATYERFYAVGTVLSNMVAQLVE 360
                 *************************************************************************************************** PP

        Rcd1 199 epssrllkhvircYlrLsdnprareaLkkclpelLkdktfkellkedpetkkwlkqLlenl 259
                 ++++rllkhv+rc+lrLsdn+rareaL++clpe L+d tf+++l++d +tk++l qLl nl
  CCE30382.1 361 SQTARLLKHVVRCFLRLSDNARAREALRQCLPEPLRDATFSSVLRDDAATKRCLAQLLINL 421
                 **********************************************************886 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8  69.7   6.4e-08     4e-05     131     284 ..      21     156 ..       2     213 .. 0.33

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 6.4e-08
       TFIIA 131 gvtlqtasg.qlykvnv.qasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqq.lekqqqqqqqqqqqqqqqqvqqqqqeesqqaq 226
                 ++++q+as  q+++v+v q+++++q a+q++q +    q+++a++++a+ q+q+qq+q++ ++qqq +++qqqqqqqqqqqqqqqq+qqqqq+++qqa+
  CCE30382.1  21 NWMHQQASHhQQNHVSVaQQQQQAQQAQQAQQAQ----QAQQAAQQAAQQQQQQQQQQQQQQQQQQqQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAS 115
                 3444444442333333343333333332222222....1111111111111111111111111111011111111111111111111111111111111 PP

       TFIIA 227 qa.sqe.............qvagsqvessqtdgaedaleeespvlegelsaeeeagaqkeelsreeidri.re 284
                 q+ +q+             +                              a+++ g   ++++++  d+i ++
  CCE30382.1 116 QQaQQHqhfnrmagnhaapV------------------------------ATNTLG--GNHVQDSGHDHIsED 156
                 11011111222222222220..............................222111..122333333333222 PP

>> LAP1C  Lamina-associated polypeptide 1C (LAP1C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  28.3   7.3e-06    0.0045      87     203 ..      11     124 ..       4     223 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.3e-06
                 ......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXX..XXXX..XXXXXXXXX CS
       LAP1C  87 hklsseslgeekldsedsvsssdktgradaqleessaalseeasdrtaasqepsaadsqeaqssghskaeqeeqdtlrrtrllvpeaeshqqetellee 185
                 h+ +++  +++ +++++s++++++++ a+ q + ++a+++++a++ ++a q+   +++q+ q++++++++q++q+++++ +   ++++ +qq+++++++
  CCE30382.1  11 HQYNPQGDAHNWMHQQASHHQQNHVSVAQQQQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQ-QQ--QQQQQQQQQQQQQQQ 106
                 5556666667777888888888888888888777777777777777666666666444444444443333333333333.22..222223333333333 PP

                 XXXXXXXXXXXXXXXXXX CS
       LAP1C 186 skesaqdtlrkskkksfv 203
                 +++++q++ ++ ++++ +
  CCE30382.1 107 QQQQQQQASQQAQQHQHF 124
                 334444444444444443 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7  20.9   1.5e-05     0.009     368     467 ..      41     160 ..       9     270 .. 0.41

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
    Ndc1_Nup 368 nkasapvkelprlsksplkkkddeifgnsltaeaspkssssskegvekalsslakspgqspsptarlsprarkllekaksrllskeqkealsestikkk 466
                 ++++++ ++ ++ +++       +  +   +a ++++++    ++ +++++++ ++++q+   ++++++++++  +++++++++++q++a++ ++++ +
  CCE30382.1  41 QQQAQQAQQAQQAQQAQ------QAAQ---QAAQQQQQQ----QQQQQQQQQQQQQQQQQ---QQQQQQQQQQQQQQQQQQQQQQQQQQASQ-QAQQHQ 122
                 11111111111111000......0111...111111111....00011000111111100...01111111111111111122222222222.222222 PP

    Ndc1_Nup 467 .....................................v 467
                                                       
  CCE30382.1 123 hfnrmagnhaapvatntlggnhvqdsghdhisednrrT 160
                 33444444444444444444444444444444444441 PP

>> Sin_N  Sin-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4  39.3   1.4e-05    0.0085     144     247 ..      30     168 ..      18     240 .. 0.48

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
       Sin_N 144 kk......eklsqqeskaeneeqdeeeeeakavtvkfkraeterqkkareqSyallkkkeee...EpWiklevheqesseseaerqklfkqttase... 230
                 ++      +   qq+++a++ +q +++++a++++ +++++++++q+++++q+ + +++++++    +  + + ++q+++++++++q+  +q ++ +   
  CCE30382.1  30 HQqnhvsvA---QQQQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQqqqQQQQQQQQQQQQQQQQQQQQQQASQQAQQ-Hqhf 124
                 332222121...2222222222211122222222222221222221111111111111111100011111112222222222223333333222.2355 PP

       Sin_N 231 ...........................tvtelslspkeylealv 247
                                            +++e + + ++y+++l+
  CCE30382.1 125 nrmagnhaapvatntlggnhvqdsghdHISEDNRRTMAYIADLL 168
                 55555555555666666666666555555555555566666555 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  60.7     5e-05     0.031     213     404 ..      24     207 ..      11     229 .. 0.35

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5e-05
        PAT1 213 aqaaaaaaasqqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqskqakpaepsasseaqeakqqappakvqp 311
                 +q+a++++++++ +a+q++qa++a+qa++a+qaqqa ++a++qqq+q+q++q+qq+++q+++    q++q++ ++++++++++++q ++qq++++ +q 
  CCE30382.1  24 HQQASHHQQNHVSVAQQQQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQ---QQQQQQQ-QQQQQQQQQQQQQ-QQQQQQQQASQQ 117
                 33333333333333333333322222222222222222222222222222222221111111...1111111.1111111111111.122222222233 PP

        PAT1 312 tqilqnpnrlaarlelsqkeqaaaqaapeqeakrqqssagk.qaqiithpqqlaqlseeekaayLeeeak.rakRnhkifllskdnGlmTpqDKn 404
                  q  q  nr+a ++ ++    a+++   ++ ++  ++++++ ++++++  ++   l+e+ ++a L e +k r +      +l +  G+mT   ++
  CCE30382.1 118 AQQHQHFNRMAGNHAAPV---ATNTLGGNHVQDSGHDHISEdNRRTMAYIAD--LLNEKTREAALLELSKkREQVPELALILWHSFGVMTSLLQE 207
                 333455555533332222...2222222222222222222212333333332..34555566666555550444445556677888888875555 PP

>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.9   0.00013     0.079     155     246 ..      51     216 ..      23     356 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
   Mem_trans 155 iseefpdtaasivsikvdsdvvsldgrkpleteaeikedgklhvtvrksnasrsdivssstprpsnltnaeiyslq....................... 230
                 +++++ ++aa+ ++++++++  +++++++ +++++ +++++ + + ++  ++++++ +++++++s++ +      q                       
  CCE30382.1  51 QQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQASQQAQ------Qhqhfnrmagnhaapvatntlggn 143
                 112222222222222222222222222222222222222222222222222222222222222222222......133444566666666666666666 PP

   Mem_trans 231 .........................................................mtrlilimvlrklirn 246
                                                                          mt l+ +++ +  ++n
  CCE30382.1 144 hvqdsghdhisednrrtmayiadllnektreaallelskkreqvpelalilwhsfgvMTSLLQEIISVYTLLN 216
                 6666666666666666666666666666666666666666666666666666666665555555555555555 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  40.7   0.00029      0.18     229     316 ..      32     119 ..      18     174 .. 0.46

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00029
  Presenilin 229 kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessesseeeeeeeeeeeese 316
                 +++v+ ++++++a++++++++ +++++++++ ++++++q+++++++++++++++++++++++++++++++++++++++++++++++ +
  CCE30382.1  32 QNHVSVAQQQQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQASQQAQ 119
                 3333333333333333333333333333333222222222222222222222222222222222222222222222222222222222 PP

>> DUF4045  Domain of unknown function (DUF4045)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  29.0   0.00027      0.17     214     306 ..      26     121 ..       9     182 .. 0.37

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00027
     DUF4045 214 pgshskkssvsgas..aeaskakeeaseeaekestekeespapasseeskesekeeekeseeekapskkaeaseekkeeeeesepeeeee....rkeap 306
                 + sh ++ +vs a+  ++a++a+++++    +++++ +++ a+++++++++++++++++++++++ ++++++++++++++++++ +++++    ++++ 
  CCE30382.1  26 QASHHQQNHVSVAQqqQQAQQAQQAQQ---AQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQqasqQAQQH 121
                 223333333333321122222222221...111111111111111111111111111111111111111111111111111111111111001111111 PP

>> eIF-3_zeta  Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  38.6   0.00033      0.21      39     147 ..      18     121 ..       6     186 .. 0.44

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00033
                 XXXXXXXX....XXXXXXX.XXX.XXXXXXXXXXXXXXXXXXXXXXX..XX.XXX..XXXXXXXXXXX.XXXXXXXXXX.................... CS
  eIF-3_zeta  39 kvaDwtseakekrekrrae.kygagsasafayqheedessFslVdnkkakkkkkeakrqrrgrgeekkerqqqqalnkkqgeeekeerskkkkkkkkgr 136
                  + +w+++++++++++  +  +++++++a + q++++ ++ +   +++a+++++++++   +++++++++qqqq+ +++q++++++++++++++++ ++
  CCE30382.1  18 DAHNWMHQQASHHQQN--HvSVAQQQQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQ---QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ-QQ 110
                 4455665533333333..1122222222222222222222222222222221211111...11111111111111111111111111111111111.11 PP

                 .......XXXX CS
  eIF-3_zeta 137 rkgwkdkkdke 147
                 +++++++ +++
  CCE30382.1 111 QQQASQQAQQH 121
                 11111111111 PP

>> DUF1387  Protein of unknown function (DUF1387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  29.1     0.001      0.65      51     140 ..      28     119 ..       5     178 .. 0.40

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.001
     DUF1387  51 sakdtesvdslsekldtasldak..eleseesasaeteekeselelqkaevelepklvaksesseaqqksakkqqkneskpksrtssessvk 140
                 s+++++ v  ++++++ ++ +++  + +++++a++  ++++++ ++q+++ + ++++ ++++++++qq+++++qq+++++ +++++++++ +
  CCE30382.1  28 SHHQQNHVSVAQQQQQAQQAQQAqqAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQASQQAQ 119
                 22222222221111111111111001111111111111111111111111111111111111111111111111111111111111111111 PP

>> CCSAP  Centriole, cilia and spindle-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  40.8    0.0011      0.71      62     171 ..      29     136 ..       9     188 .. 0.32

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0011
       CCSAP  62 s..knkvepeeskkevkleeeeeekeeeraaaeeeekaseeeteekevkekekqqakaeasksekekkekekseskqqkpkssalakrekrksakspqq 158
                 +  +n+v+  ++++++++ ++ ++++++++   ++++a+++++++++++++++qq++++ ++++++++++++++++qq++++++ ++++  ++a+++q+
  CCE30382.1  29 HhqQNHVSVAQQQQQAQQAQQAQQAQQAQQ---AAQQAAQQQQQQQQQQQQQQQQQQQQ-QQQQQQQQQQQQQQQQQQQQQQQQQQQQQASQQAQQHQH 123
                 111233333222222222222222111111...11111111111111111111111111.111111111111111111111112222222222222222 PP

       CCSAP 159 psekkkenrhPfa 171
                  +++  ++  P+a
  CCE30382.1 124 FNRMAGNHAAPVA 136
                 2222222222433 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  29.0    0.0017       1.1     100     217 ..      31     121 ..      11     186 .. 0.43

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0017
       CDC45 100 ekerivvfDDgdieeeleeereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrsepsa 198
                 +++++ v   ++ +++ ++ ++a +a +  +++ ++++++++++++                          ++++++++++++++++++++++++ ++
  CCE30382.1  31 QQNHVSVAQQQQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQQQ--------------------------QQQQQQQQQQQQQQQQQQQQQQQQ-QQ 102
                 2233333333322222222222222222222221111111111111..........................111111111111111111111111.11 PP

       CDC45 199 kklrrqlkkerrkyeavle 217
                 +++++q+++++ +++a+ +
  CCE30382.1 103 QQQQQQQQQQQASQQAQQH 121
                 1111111111111111111 PP

>> CnrY  Anti-sigma factor CnrY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.5       2.7   1.7e+03       5      49 ..      20      63 ..      17      67 .. 0.52
   2 ?    9.3   0.0     0.002       1.3      46      91 ..     223     272 ..     193     275 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.7
                HHHHHHHHHHHHHHT----HHHHHT-XXXXXXXXXXXXXXXXXXX CS
        CnrY  5 eewlssaakvsleasiGvdlasleeqldkemaqivlvarrdaqra 49
                ++w+ + a   ++  + v     +++ +++ aq++  a++ aq+a
  CCE30382.1 20 HNWMHQQASHHQQNHVSV-AQQQQQAQQAQQAQQAQQAQQAAQQA 63
                567776433333333333.22333344566677777776666654 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.002
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXX CS
        CnrY  46 aqraivcaalaalvafvainrvatlmlekaaptw....laspsaaspysl 91 
                 a    vc ala l   ++ n + tl l+   p++    l + s + p+  
  CCE30382.1 223 AASNRVCNALALLQCVASHNETRTLFLNAHIPLFlypfLNTTSKSRPFEY 272
                 555679**********************9999862222578888888875 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  28.6    0.0046       2.9      94     189 ..      22     123 ..       5     186 .. 0.42

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0046
                     HHHHHT.THHHHHHC--------------.--------------------------------------SS---TTGGG--..........----- CS
  Neur_chan_memb  94 wvrkvf.ldklprllfmkrpsevkdnekklssgasseaeelilskskseskkaklseeqgsekastckckckegeeaspstqlsk.....eelsp 182
                     w+++ +  +  +++  +++++++++++++++++++++a++   ++++++ ++++++++q+++++++++ ++++++++++++q+++     +++s+
      CCE30382.1  22 WMHQQAsHHQQNHVSVAQQQQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQqqqqqQQASQ 116
                     33333303333333333333333333333322222222222222222221211111111111111111111111111111111111111122222 PP

                     TTTTTHH CS
  Neur_chan_memb 183 elkkave 189
                     + +++ +
      CCE30382.1 117 QAQQHQH 123
                     2222222 PP

>> Membralin  Tumour-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  20.8    0.0064         4      83     168 ..      39     114 ..      10     191 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0064
   Membralin  83 rnlkksevllessekeeesekkisisenkkvllkeasvtlleesvlevsleaeeeekessslkkeeelrsveliensslktnlkll 168
                 +++++           ++ ++  + ++++++ ++ a+++++++++++ +++++++++++++ +++++ +++++ ++++ +++ ++ 
  CCE30382.1  39 QQQQQ----------AQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQA 114
                 22222..........22222222222222222222222221111111111111111111111111111111111111111111111 PP

>> FAM60A  Protein Family FAM60A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  34.7    0.0064       3.9      66     173 ..      15     122 ..      10     132 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0064
      FAM60A  66 PagskrnWkhvvdaragpglkslaklkkkekkesskkieekfekklkkkkklkktkakasdasssereaspassdsasedsdesedeeekkrkkllekk 164
                 P+g  +nW h   ++   +  s+a+++++ ++ ++ ++ +++++ +++  ++++++++++++++++++++ ++++++++++++++++++++++++++++
  CCE30382.1  15 PQGDAHNWMHQQASHHQQNHVSVAQQQQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 113
                 99*************999999999999885555444444444444444444343333333333333333333333333333333333333233333333 PP

      FAM60A 165 kkrsaeklv 173
                 ++++a++++
  CCE30382.1 114 ASQQAQQHQ 122
                 333333333 PP

>> AF-4  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  42.6    0.0046       2.8      97     232 ..      26     160 ..       3     197 .. 0.45

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0046
        AF-4  97 qssrlapsfqnssksqsvkppasaslssstlsqsskksqpssepsrslhsssfsssslnhsqqsraessreksessseekkerredleesasdsss.ak 194
                 q   +++++qn+++  ++++ a ++ ++++++q ++ +q+++++++++++++ ++++++++qq++++++++++++++++++ ++++++++++ s++  +
  CCE30382.1  26 Q---ASHHQQNHVSVAQQQQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ-QQQQQQQQQQASQQaQQ 120
                 1...12222233333333333333333344455555555444444444444444444333333333333333322222222.22222222333333123 PP

        AF-4 195 eeelspllsslsspv..kpLsllhssqhansktqssskah 232
                 +++ + ++  ++ pv  ++L   h +++++ + +++++++
  CCE30382.1 121 HQHFNRMAGNHAAPVatNTLGGNHVQDSGHDHISEDNRRT 160
                 3333333333444441156777777777776655444443 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  29.8    0.0059       3.7     242     320 ..      36     114 ..       7     151 .. 0.31

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0059
      DUF572 242 esskekkkeslekklskltkkkadsslvvrKkkkeeekskeskekteeeskeseeeskkeeetsaeeekeekakkksss 320
                 + +++++++++ ++ ++ ++++++ +   + +++++++++++++++++++++++++++++++++++++++++++++++ 
  CCE30382.1  36 SVAQQQQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQA 114
                 1111111111111111111111111111111111111111111111111111111111111111111111111111111 PP

>> Caldesmon  Caldesmon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  35.5    0.0058       3.6      71     167 ..      24     121 ..       7     190 .. 0.36

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0058
   Caldesmon  71 akreerrqrrlke.alerqkeldaeaaeaseerslaeekeeaeeeekssrrkeryrdeeeeeeeteekekereekkqaeskeeeeeekaeaeeeaeee 167
                 ++++ + q+     a+++q+ ++a++a++ +++++a+++  +++++++++++++ +++++++++++++++++++++q+++++++++++++a+++a+++
  CCE30382.1  24 HQQASHHQQNHVSvAQQQQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQASQQAQQH 121
                 33332222222221111111111111111111111111111111111111111111111111111111111111111111111111111111111111 PP

>> PNISR  Arginine/serine-rich protein PNISR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  39.7    0.0075       4.7      31     115 ..      39     122 ..      16     186 .. 0.36

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0075
       PNISR  31 rerrekeraerrkeekkesskeeeeaknprnlakskfdsedeksdeeeeegaegedsesqekasskksevdeqespeeeeaarke 115
                 +++++ ++a+++++ +++++  ++ a++++++++ +++++++++++++ ++++++++++q+++++++++ ++q+++ +++a++++
  CCE30382.1  39 QQQQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQ-QQQQQQQQQQQQQQQQQQQQQQQQQQQASQQAQQHQ 122
                 111111111111111111111111111111111111111111111111.111111111111111111111111111111222222 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  29.7     0.011       6.7      42     122 ..      41     114 ..      14     164 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.011
        NPR3  42 gkwrkskkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeeeeeededdeesekeeeek 122
                 ++  ++ ++ ++ ++ ++  +++++++++++++++++++++++++++++++++++ ++++++++++++++      ++++ 
  CCE30382.1  41 QQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ-QQQQQQQQQQQQQQ------QQQQA 114
                 1111111111111111111111111111111111111111111111111111111.11111111111111......11111 PP

>> CAC1F_C  Voltage-gated calcium channel subunit alpha, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  24.2    0.0082       5.1      75     170 ..      26     124 ..       6     178 .. 0.47

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0082
     CAC1F_C  75 apsddrgvsskissrkpsvkqslssetkrsskvevltedsegsaklkae...vsgekglekqeeeeeevvssekraaldeqaetteevvllqplrseha 170
                 ++s+++++++++++++++++q+   +++++ ++   +  ++++++++ +    + ++ +++q++++++ +++++++++++q++++++ + +q ++++h 
  CCE30382.1  26 QASHHQQNHVSVAQQQQQAQQAQQAQQAQQAQQAAQQAAQQQQQQQQQQqqqQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQASQQAQQHQHF 124
                 455556666666555555444444333333333332222222222222211111111112222222222222222223333333333344444444433 PP

>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  32.0      0.01       6.5      95     175 ..      50     138 ..      11     188 .. 0.34

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.01
                  HHHHHHHXXXXXXXXX........XXX..XXXXXXXXXX.....XX.XX.............XX..XXXXX...XXXXXXXXXX.............. CS
  SRP-alpha_N  95 dqllrelEasaeaakkskaakepkamksfeeskkskktvksskedkkpe..gkkkkgakkekda..sddstpsatpetsrpstp.............. 174
                   q+ +++ ++a++a+++++++++++         ++++++++++++  +  ++++++++++  +  ++++++++++++s+++++              
   CCE30382.1  50 AQQAQQAQQAAQQAAQQQQQQQQQQ---------QQQQQQQQQQQQ--QqqQQQQQQQQQQ--QqqQQQQQQQQQQQASQQAQQhqhfnrmagnhaap 134
                  1111111111111111111111111.........111110000000..0000000000000..01111111111111111111111222222222222 PP

                  ...X CS
  SRP-alpha_N 175 ...s 175
                     +
   CCE30382.1 135 vatN 138
                  3321 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  38.3     0.011       6.6      83     179 ..      32     128 ..       5     132 .. 0.36

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.011
                 X...XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHH CS
    RR_TM4-6  83 t...pelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkakskkkeeaeaeesellkklevyqtkllnyl 178
                 +   ++++++++ +++++ +++++ ++ a++  +a+ ++++++++++++++++++++++++++++++++++++++++++++++  ++ +++q++  n +
  CCE30382.1  32 QnhvSVAQQQQQAQQAQQAQQAQQAQQAAQQ--AAQ-QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQASQQAQQHQHFNRM 127
                 1222222222222112222221111111111..112.12222222222222233333333333333333333333334444444445555555555555 PP

                 H CS
    RR_TM4-6 179 A 179
                 A
  CCE30382.1 128 A 128
                 5 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  33.3     0.011       6.9     503     607 ..      21     124 ..      14     185 .. 0.54

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.011
    Hamartin 503 rtleslaksqrrkrlasalssesisdaegaatkkeaksskeaesslekekscsakqsftpieqklessk.dcpadeeesensleeklltpspckkaskq 600
                 +++++ a+ ++++++  a+++++ ++a++a + ++  +++ a+++ +++++++ +q+ ++++q+ ++++ + ++++++++++++++  ++++ ++as+q
  CCE30382.1  21 NWMHQQASHHQQNHVSVAQQQQQAQQAQQAQQAQQ--AQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQqQQQQQQQQQQQQQQQQQQQQQQQQQASQQ 117
                 56777777776666666666663333333333222..22222222222222222222222222222222122222222222222333333333333334 PP

    Hamartin 601 kvstqeg 607
                  +++q+ 
  CCE30382.1 118 AQQHQHF 124
                 4444433 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  32.9      0.02        12      96     187 ..      25     114 ..      13     145 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.02
      AAA_11  96 eeeriseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaees 187
                 ++ +++++ + vs+ +++++ ++++ +aq+a++ +++ ++ a++ ++++++++++++++++++++++++q++++ ++++++ +++ ++++++
  CCE30382.1  25 QQ-ASHHQQNHVSVAQQQQQAQQAQ-QAQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQA 114
                 44.5666666677666666666554.333333333333333333333333333222222222222222222222222222222222222221 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  39.1     0.016        10     132     238 ..      25     125 ..      13     161 .. 0.36

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.016
       SLC12 132 eeeeeeeekekkeaeesekeeeekkkakkkklle..ekskekeekekleekdsnlslseekkeeekekkkekkkkkekkeklkkkekslllkeaskeek 228
                 ++ +++++++ ++a++++++++++++++ +++++  +++ +++++++ ++++++++++++++++++++++++++++        +++++  ++++++  
  CCE30382.1  25 QQASHHQQNHVSVAQQQQQAQQAQQAQQAQQAQQaaQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ--------QQQQQQQQQQQQQAS 115
                 3333333333333333222221111111111111111111111111111111111111111111111111111111........111111111111112 PP

       SLC12 229 evleeitqfq 238
                 +  ++ ++f+
  CCE30382.1 116 QQAQQHQHFN 125
                 2222333333 PP

>> PA26  PA26 p53-induced protein (sestrin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  28.1     0.021        13     183     281 ..      27     126 ..      11     186 .. 0.36

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.021
        PA26 183 sskklksasasanekedssee...eeeelerkaaaeaeaevealmermkklqeeedeeeeaseeelserfekeeseslllaaadaeeaavasdlsryve 278
                  s++ +++++ a+++++++++   ++++++++aa++a+++ +  +++ +++q++++++++++++++++  +++++++ + +++++++++++++ +++ +
  CCE30382.1  27 ASHHQQNHVSVAQQQQQAQQAqqaQQAQQAQQAAQQAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ--QQQQQQQQQQQQQQQQQQQASQQAQQHQH 123
                 22222222222222222222200022222222222222222222222222222211111111111111..11111111111112222222233333333 PP

        PA26 279 dpe 281
                  + 
  CCE30382.1 124 FNR 126
                 333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      6679  (0.372525); expected 358.6 (0.02)
Passed bias filter:                     1709  (0.0953204); expected 358.6 (0.02)
Passed Vit filter:                      1298  (0.0723967); expected 17.9 (0.001)
Passed Fwd filter:                       299  (0.0166769); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 2.45u 0.39s 00:00:02.84 Elapsed: 00:00:00.59
# Mc/sec: 2214.27
//
Query:       CCE30383.1  [L=63]
Description: uncharacterized protein CPUR_04231 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 483.62
//
Query:       CCE30384.1  [L=312]
Description: uncharacterized protein CPUR_04232 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0016   18.5   7.7     0.0027   17.8   7.7    1.3  1  bZIP_1    bZIP transcription factor
     0.0096   16.0   7.3      0.015   15.4   7.3    1.2  1  bZIP_2    Basic region leucine zipper


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   7.7     3e-07    0.0027       7      35 ..      51      79 ..      48      81 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3e-07
                XXXX--HHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  7 ekrkqkNReaArrsRqRKqaeieeLerrv 35
                e+r+++NR+a+r +R++ + + e Lerr+
  CCE30384.1 51 ERRRIQNRIAQRNYRKKLKRRLEDLERRA 79
                8**************************96 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   7.3   1.7e-06     0.015       4      34 ..      49      79 ..      46      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-06
                XXXXXXXXXXXXXXX-HHHHHHHHHHHHHHH CS
      bZIP_2  4 eyrerRrkNreAarrsRekkkakeeeleerv 34
                 +++rR +Nr+A r++R+k k + e+le+r+
  CCE30384.1 49 LAERRRIQNRIAQRNYRKKLKRRLEDLERRA 79
                5566666*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1042  (0.0581181); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2167.49
//
Query:       CCE30385.1  [L=226]
Description: uncharacterized protein CPUR_04233 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-40  138.8   0.0    2.2e-40  138.3   0.0    1.2  1  CIA30     Complex I intermediate-associated protein 30 (CIA30


Domain annotation for each model (and alignments):
>> CIA30  Complex I intermediate-associated protein 30 (CIA30)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.0   1.2e-44   2.2e-40      10     159 ..      18     177 ..      12     178 .. 0.94

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 1.2e-44
       CIA30  10 dkwtllsDrvmGGvStaslklskkdktalFsGnlstelinrgGFasvrtkkrkrkldlssyegleLrvk....GDgrkYklnlktesk.......eqsg 97 
                 d w +++Drv+GG+S+++l+++ + ++a+F+G+l+t +++++GFas+++  ++ +ldl++y+g+ + v+    +Dg++Y l+lk++ +       eqs+
  CCE30385.1  18 DVWVTTDDRVRGGASHSYLTVD-SPDHARFHGHLDTSTLGGAGFASQHS-LGELHLDLQDYDGIVVSVRgpdkADGKRYALTLKDDLVppssdgkEQSS 114
                 56*******************7.678***********************.*******************77778************99*********** PP

       CIA30  98 lsyqadfetkkgewetvkipfsdfvptfrGrvvedqeeldlskiksigllls...dkqegpfeLe 159
                 +s++a+f ++k    +vk+p+++f++t+rGr+ ed+ +l+l++ik++gl+++   +kq+g+f+L 
  CCE30385.1 115 VSWEAQFVAEK--PGDVKLPWDQFKATYRGREKEDAAPLNLKDIKRVGLMMRsffGKQDGDFQLH 177
                 *******9753..469***********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1661.28
//
Query:       CCE30386.1  [L=319]
Description: uncharacterized protein CPUR_04234 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-40  137.7   2.2    1.3e-38  132.9   2.2    2.1  1  DUF1295     Protein of unknown function (DUF1295)
     0.0011   19.0   0.1     0.0083   16.1   0.0    2.1  2  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase


Domain annotation for each model (and alignments):
>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   2.2   1.4e-42   1.3e-38      33     235 .]      90     311 ..      73     311 .. 0.83

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 1.4e-42
     DUF1295  33 seaaklrrllvllLvvlWglRLalhllrrtlkkgeDkryeelrkelgktiallsllvvfvlQavllylvalpvllaaaskeeq.....alkaldvigla 126
                 ++a+++r+++v+ +++lW+ RL+++l+ r++ +g+D+r+e+lr +       l+++  f lQa+++ l+ +pv + +a    +      l   dv+g+ 
  CCE30386.1  90 AAAWNWRQVVVTSMAMLWATRLGYYLFDRITRDGHDPRFEKLRTQP------LRFAASFFLQAMWVSLMLMPVFALNAVPAVAwravpRLMLSDVLGVG 182
                 5669***************************************965......68999999*************99987543335566689999****** PP

     DUF1295 127 lwlvgivlealaDqQlsaf...kkdpankgkvldsGLwrysRHPNYfgealiWwglflialea.................leglealaiagpllltlll 205
                 +w  g+++ea+aD+Q+s++   kk+ + + ++l++GL+++sR P Yfge+ +W gl   a+ a                 +   +al+ ++p +  +ll
  CCE30386.1 183 IWAGGFAMEAVADAQKSRWvegKKKKEHEEQFLAKGLFSVSRFPHYFGEISLWTGLATTAAGAlalkpvqialgftgpagVLATTALSFTAPAFSAFLL 281
                 *******************999999999999*************************9888776443333333333222221223456678999****** PP

     DUF1295 206 vfvsgipllEkkalkkykdkeeyreYqkkt 235
                 ++vsgip++E++ +k++kd++ey+++++ t
  CCE30386.1 282 TQVSGIPMTEERHDKRFKDNKEYQAWKRDT 311
                 **************************9876 PP

>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   9.3e-07    0.0083      43     104 ..     178     242 ..     139     254 .. 0.85
   2 ?    0.4   0.0     0.063   5.6e+02     104     140 ..     268     306 ..     263     319 .] 0.68

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.3e-07
  Steroid_dh  43 llgivlfvlgmliniksdiiLr...elrkegetkykiprgglFelvsapnyfgEilewigyalvt 104
                 +lg+++++ g+ ++  +d +     e +k++e++ +    glF    +p+yfgEi  w g+a  +
  CCE30386.1 178 VLGVGIWAGGFAMEAVADAQKSrwvEGKKKKEHEEQFLAKGLFSVSRFPHYFGEISLWTGLATTA 242
                 68999999999999999876544558899999999999*********************998655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.063
  Steroid_dh 104 tkslaalaFalftvlnl..tvraaahhkwykkkfekYpk 140
                 + s+ a aF  f ++++   + + + h    k +++Y  
  CCE30386.1 268 ALSFTAPAFSAFLLTQVsgIPMTEERHDKRFKDNKEYQA 306
                 557788888877776662257888999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2490.96
//
Query:       CCE30387.1  [L=339]
Description: probable FBP1-fructose-1,6-bisphosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-70  234.5   0.1    8.5e-70  234.1   0.1    1.1  1  FBPase    Fructose-1-6-bisphosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> FBPase  Fructose-1-6-bisphosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.1   0.1   4.7e-74   8.5e-70       2     189 .]      16     204 ..      15     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 234.1 bits;  conditional E-value: 4.7e-74
      FBPase   2 tltrfiveeqkeeanatgeltallsalklalkiisskvrkaelvnllGlagaeNvtGdeqkklDvladeiliealkaseevkvlvSEEeeelivlerek 100
                 tltrf+ eeq+++++a g++t l  al+ ++k i+  +r+a l+nl+Glag++N+tGdeqkklDv++++++iea+++s++++vlvSEEee++i +++  
  CCE30387.1  16 TLTRFLNEEQTKHKEASGDFTLLCHALQYSFKSIAYYIRRATLINLTGLAGSSNTTGDEQKKLDVISNDLFIEAMRSSGKCAVLVSEEEEDVIYFDSAD 114
                 9************************************************************************************************** PP

      FBPase 101 egkyvvafDPlDGSSnidtnvsvGtifsiyrkksedeettidvlqpGkeqvAAgyvvYGsstmlVltlga.GvngFtlDpslgefiltke 189
                  ++y+va+DP+DGSSn+d++vsvGtif+i++ +   +  ++d+l+pG ++vAAg+++YG+s++lVlt+++  vngFtlD+ +gefilt++
  CCE30387.1 115 GARYAVACDPIDGSSNLDAGVSVGTIFAIHKLPDGSRGCKEDILRPGTDLVAAGFTMYGASAQLVLTMKDsSVNGFTLDNGIGEFILTHP 204
                 *******************************7777777777***************************9879****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2392.54
//
Query:       CCE30388.1  [L=235]
Description: related to peroxin-11 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-62  211.3   0.1    1.3e-62  211.2   0.1    1.0  1  PEX11     Peroxisomal biogenesis factor 11 (PEX11)


Domain annotation for each model (and alignments):
>> PEX11  Peroxisomal biogenesis factor 11 (PEX11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.2   0.1   7.4e-67   1.3e-62       1     223 []      12     231 ..      12     231 .. 0.99

  Alignments for each domain:
  == domain 1  score: 211.2 bits;  conditional E-value: 7.4e-67
       PEX11   1 ldklvkflaqtqgrDKllRalqYasrllayllerkgsskelvkklkklesqfslsRKllRlgkflehlqaaaklld.nkledpvlrllavlrnlgyalY 98 
                 ++++++f+a+t grDKllR++qY++r++a++l r+++++++++++++ ++q++l+RK+lR+gk++ehl+aa ++    +++d +lr++av+r++gya+Y
  CCE30388.1  12 VAHYLRFIATTTGRDKLLRTIQYFARFYAWYLLRTNATRSQITPWTTTKKQLGLTRKILRVGKNIEHLKAAVVATAgANPRDVFLRYAAVGRQIGYAGY 110
                 5799**********************************************************************9999999****************** PP

       PEX11  99 lllDhvlwlkklgllkvknakklsrlssrfwlfglvlslvrdlyelrllqekekklkkekkekeereeeklaavlkkrpallldlvknllDllialnel 197
                 l+lD  ++ +++g+   + ak+++  ++rfw++glv+s +++ly  ++l+++e++ ++  k++e+  e k  ++  +r a  l+l+++l+Dl+i+ ++l
  CCE30388.1 111 LTLDAATVPDAAGIRGWEGAKRVQGHAYRFWAAGLVCSAAAQLYVQYRLRQREARIDR--KDGEGVVESK--RIAFERSASHLQLISDLCDLTIPASAL 205
                 *******************************************************998..99****9999..*************************** PP

       PEX11 198 gilklsdgvvGlaGliSSllgllqlw 223
                 g++ l+dg+vGlaG++ Sl+g++ +w
  CCE30388.1 206 GWVGLDDGFVGLAGTLGSLIGIYGQW 231
                 ***********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1817.29
//
Query:       CCE30389.1  [L=327]
Description: questionable protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-22   78.0   0.0      1e-09   38.0   0.0    2.3  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   6.8e-14   1.2e-09       1      69 [.       9      70 ..       9      71 .. 0.91
   2 !   38.0   0.0   5.9e-14     1e-09       3      68 ..     105     167 ..     104     169 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 6.8e-14
                EEEESETTTSSHHHHHHHHHT..TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFsk..fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69
                l++gnLp+++t+ +++++F     G+i+++kl++       gf+f+e++++ dA++ +   +g  l+g++l
  CCE30389.1  9 LYLGNLPRNATKADIEAHFAThgTGEITDVKLMN-------GFGFIEYKDPMDARDVVP--DGSDLMGTRL 70
                89******************96678999*****9.......9**************998..8888888776 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 5.9e-14
                 EESETTTSSHHHHHHHHHTTS.CEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1   3 VgnLppdvteeeLkelFskfG.piksiklvrdetgkskgfafVeFeskedAekAlealngkklggre 68 
                 +++Lp+++++++Lk++ ++ G +++  +      + s+g +fVe+e+  d + A+e+l+g+ ++g+ 
  CCE30389.1 105 ITGLPHETSWQDLKDFARQPGlDVVYSE----TGRDSNGRGFVEYETAADLRTAVEKLDGRDFKGNH 167
                 799***************9872444444....4555****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2618.07
//
Query:       CCE30390.1  [L=1223]
Description: related to intermediate filament protein MDM1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-53  182.0   0.5    5.8e-53  179.6   0.5    2.4  2  PXA       PXA domain
    9.3e-30  103.5   0.2    3.6e-29  101.6   0.2    2.1  1  Nexin_C   Sorting nexin C terminal
    1.8e-19   69.8   0.6    7.3e-19   67.8   0.6    2.1  1  PX        PX domain
      1e-13   51.6   0.2    3.1e-13   50.0   0.2    1.9  1  RGS       Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PXA  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.6   0.5   1.3e-56   5.8e-53       1     181 [.      99     282 ..      99     283 .. 0.97
   2 ?   -3.0   0.0       1.4   6.3e+03      92     128 ..    1059    1097 ..     994    1110 .. 0.57

  Alignments for each domain:
  == domain 1  score: 179.6 bits;  conditional E-value: 1.3e-56
         PXA   1 speldeelhellalilrdfVlsWYskissdeeFptevrsilrsviralanrlkkvDlaqllltrlldlltshlrdyrqaeekvkskkae......eesd 93 
                 s++++++++ ll+lilrdfV+sWYs+is+++ Fp+e+++++rsvi +l + l++ Dla+++++rl++++t+h+rd+  ae++++++k +      ee+d
  CCE30390.1  99 SQQVAKAVDGLLDLILRDFVRSWYSHISPNPVFPNEIDRAVRSVITSLLDLLRDKDLADIVTSRLIPIFTAHIRDFYDAEKAIRGRKLNrsvtesEELD 197
                 68999********************************************************************************************** PP

         PXA  94 ldlaakffalephpalsavlrdieeskeaelaylrslverlLslllppedlesetvrtlvreilanvvlkplleklsdPdfinqliik 181
                 l++a+k++++++h a+s    +++++k  +++ylrslverl+++llp++ l+s++v+t++rei++++vl p++++lsdPd++nq +++
  CCE30390.1 198 LAIASKYKDGRLHAAAS---LSSPDTKMVQQDYLRSLVERLMPKLLPKNMLASRSVSTIIREIVSCAVLSPVFQLLSDPDTWNQAMEN 282
                 ****************9...556889999********************************************************987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
         PXA   92 sdldlaakffalephpalsavlrd..ieeskeaelaylr 128 
                  + ++  ++f+++e++p ++++++   +  + ++ +++lr
  CCE30390.1 1059 EAEAELNAFENKELEPFIKPICDIflEVFELNRGNNWLR 1097
                  333444578888888888888865553333333455555 PP

>> Nexin_C  Sorting nexin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.2     8e-33   3.6e-29       1     111 [.    1095    1201 ..    1095    1202 .. 0.95

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 8e-33
     Nexin_C    1 WlrrqaltvlkqvlqqllgdtierwlkekiekltseeavaslikklrdalWPdgeskaesaperseeeklrtraearklLlellpdalvsvvGrkna 97  
                  Wlr++a+   ++vlqqllg+tier+++++++ l ++e+++++i +l+d++WP+g   + ++++rs+++k++tr+ea  +L +l+pd+++svvGr na
  CCE30390.1 1095 WLRGRAV---VVVLQQLLGGTIERKVRDNVKGLLQDESLLRYIGMLQDSMWPNG-ILQRDKKPRSAAQKKKTRTEASLMLATLVPDLAGSVVGRVNA 1187
                  *****99...********************************************.55555578********************************** PP

     Nexin_C   98 eealkrifellQnp 111 
                  ++a++rif++l+n+
  CCE30390.1 1188 QAASRRIFATLNNS 1201
                  ************97 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.6   1.6e-22   7.3e-19       9     113 .]     883     986 ..     873     986 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 1.6e-22
                 EEEEEETTSSEEEEEEEEEETTS....SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHHS CS
          PX   9 leretsgskkhsyylyevelktg....akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrns 103
                  ++e   +++  +y++ev+++ g    a +w v RrYs+F++Lh+kL++++ +v+   +P+++++ +   +++ef++krr++Le+yL++ll  p  ++s
  CCE30390.1 883 GREE--DGREFAMYVVEVQRNAGeqmpAASWIVTRRYSEFHDLHQKLRSRYASVRSLDFPRRRVVMK---FQSEFLRKRREALEKYLRELLFLPDVCRS 976
                 3322..68889999999999999****************************************9976...***************************** PP

                 HHHHHHHHSS CS
          PX 104 evlteFLevs 113
                 ++l+ FL++s
  CCE30390.1 977 RDLRAFLSQS 986
                 *******875 PP

>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.2     7e-17   3.1e-13       2     117 ..     416     552 ..     415     553 .. 0.93

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 7e-17
                 HHHHHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS................SHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCSS. CS
         RGS   2 leslledqpgrslFreFlesefseenlsFwlaveefkka................keqeelkkkakeIyneylapsspkelnidkklreelekrleke. 83 
                 l +ll+d++g+s+F e++e++     ++Fwl v++f++                   +e    + ++I ++yl   s+ el+++++ r e++++le   
  CCE30390.1 416 LVELLKDSSGLSYFMEYMERQRLMSLVQFWLVVDGFRNPleddgledehhaftlpMWSEPDRLDLQQIHQAYL---SKPELHVPESSRREVRRFLEAGk 511
                 5689*******************************************9999999844444455699*******...********************999 PP

                 .......STTTTTTHHHHHHHHHHHHHHHHHHHHTSHHHHH CS
         RGS  84 .......qpsrklfeeaqeevfellekdsypkFlkselylr 117
                         + rk+  +aq++v+e ++++ y+ F ks+ly +
  CCE30390.1 512 satslqyYNARKAILKAQSAVLEEMQSQHYHGFKKSDLYYK 552
                 ******999******************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 8122.20
//
Query:       CCE30391.1  [L=271]
Description: probable methyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-54  184.3   0.0    1.6e-54  184.0   0.0    1.1  1  Methyltransf_4   Putative methyltransferase
      0.001   19.7   0.0     0.0029   18.3   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.034   13.7   0.0    1.8  1  MTS              Methyltransferase small domain
      0.022   14.6   0.0      0.028   14.2   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
      0.064   14.0   0.0       0.18   12.6   0.0    1.7  2  Methyltransf_12  Methyltransferase domain
      0.081   13.6   0.0       0.36   11.5   0.0    2.2  2  Methyltransf_11  Methyltransferase domain
       0.14   12.1   0.0       0.28   11.1   0.0    1.6  2  Methyltransf_32  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.0   0.0   6.3e-58   1.6e-54       4     171 ..      84     258 ..      81     260 .. 0.97

  Alignments for each domain:
  == domain 1  score: 184.0 bits;  conditional E-value: 6.3e-58
                     EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHC.......TTSSEEEEES-CCCHHHHCS-TTSEEEEEEES-----SGGGGG CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkieal.......elkNlrilrgdalkvllelledgslekifilFPDPwfKkrhhK 91 
                      +++iGcG G++lvalA+  P++++lG+Eir++v++ v +ki al        ++N +++r + +k+l++++++++l+kifi+FPDP+fK+r+hK
      CCE30391.1  84 EIVDIGCGFGGLLVALAPLYPETLMLGLEIRTSVTQFVQEKIWALreqnggtLYQNAACIRANTMKFLPNFFKKAQLSKIFICFPDPHFKARKHK 178
                     589***************************************999999999999***************************************** PP

                     GSTTSHHHHHHHHHHEEEEEEEEEEESHHHHHHHHHHHHHCSTTEEESSCCCSCCTCHCHHCCCSSTTCCCCCCTTSS-E CS
  Methyltransf_4  92 rRllqpellkelarvLkkgGvlelaTDveeyaeemlkvleeeplferlskeeeleeeplsvlriatkyeqkvqskgkeiy 171
                      R+++ +l +e+a++L++gG+++++TDve ++ +m+++l+++p+fer+s+ee +e+e+++v+r+ t++++kv +++++++
      CCE30391.1 179 ARIVSTTLNSEYAYALRPGGIVYTITDVEALHLWMVQHLDAHPSFERVSEEEVQEDECVKVMREETEEGKKVARNQGQKF 258
                     ***************************************************************************99987 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.4   1.1e+04      46      65 ..      27      46 ..      14      56 .. 0.73
   2 !   18.3   0.0   1.1e-06    0.0029       1      75 [.      85     171 ..      85     198 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.4
                     TTEEEEESBCCGBSSSTTTE CS
  Methyltransf_25 46 lnvefvqgdaedlpfedgsf 65
                     ++ +f+++ a++ pf d++ 
       CCE30391.1 27 PRKRFYRQRAHANPFSDHTL 46
                     46678888888888887765 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.1e-06
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHH...TTT......TEEEEESBCCG.BS..SSTTTEEEEEEEST.GG CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraee...egl......nvefvqgdaed.lp..fedgsfDlvvssga.lh 75 
                      ++d+GcG G l+ ala  +++  ++g++i  +  + ++e++ +   +        n+ +++++  + lp  f++++   +++++   h
       CCE30391.1  85 IVDIGCGFGGLLVALAPLYPETLMLGLEIRTSVTQFVQEKIWAlreQ-NggtlyqNAACIRANTMKfLPnfFKKAQLSKIFICFPdPH 171
                      89*****************99****************9998665431.1335555555555555443445556666666666555343 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.3e-05     0.034      32      75 ..      82     125 ..      75     220 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
                 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHH CS
         MTS  32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenl 75 
                 + +++D+GcG+G l +ala  +pe+ +  +++ +   ++ +e +
  CCE30391.1  82 DIEIVDIGCGFGGLLVALAPLYPETLMLGLEIRTSVTQFVQEKI 125
                 4469*******************988777777777766666654 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.1e-05     0.028       2      43 ..      80     120 ..      79     248 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaiel 43 
                      +k+++++D+GCG G l+ +la  l+p+  + G++i   + ++
       CCE30391.1  80 KKDIEIVDIGCGFGGLLVALA-PLYPETLMLGLEIRTSVTQF 120
                      799******************.88999999999987766555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     7e-05      0.18       1      46 [.      86     131 ..      86     141 .. 0.87
   2 ?   -3.0   0.0         5   1.3e+04      93      98 ..     194     199 ..     186     228 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrenn 46 
                      ++iGcG G ll al++  p++  +g++i +s+ +  +ek+ + +++
       CCE30391.1  86 VDIGCGFGGLLVALAPLYPETLMLGLEIRTSVTQFVQEKIWALREQ 131
                      69***************************99998888887666655 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5
  Methyltransf_12  93 LkpgGr 98 
                      L+pgG+
       CCE30391.1 194 LRPGGI 199
                      444443 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       5.7   1.5e+04      46      62 ..      30      46 ..      15      62 .. 0.67
   2 ?   11.5   0.0   0.00014      0.36       1      54 [.      86     149 ..      86     202 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.7
                     EETTEECCCTSS-TT-E CS
  Methyltransf_11 46 efvvadaeklpfednsf 62
                     +f +++a+  pf d++ 
       CCE30391.1 30 RFYRQRAHANPFSDHTL 46
                     45666666667777665 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00014
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-........EEEETTEECCC CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl........kvefvvadaek 54 
                      +d+GcG G l+ ala  +  +  +g+++ + +++ ++ek+   ++        +  +++a+  k
       CCE30391.1  86 VDIGCGFGGLLVALAPLYpeTLMLGLEIRTSVTQFVQEKIWALREqnggtlyqNAACIRANTMK 149
                      59*************888899999*********9999988777666666665544444444443 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.28      22      71 ..      78     125 ..      63     187 .. 0.81
   2 ?   -2.7   0.0       2.1   5.3e+03      59      60 ..     239     240 ..     207     262 .. 0.48

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
  Methyltransf_32  22 kesgaltvvDvGaGkgYLsfvlalkeke.yklkvvgidakeelvekaekra 71 
                      + ++++++vD+G+G g L  +la       ++ ++g+++++++++  ++  
       CCE30391.1  78 QLKKDIEIVDIGCGFGGLLVALAP---LyPETLMLGLEIRTSVTQFVQEKI 125
                      557899****************99...53678899****999998776655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.1
  Methyltransf_32  59 ak 60 
                      + 
       CCE30391.1 239 VM 240
                      11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1990.43
//
Query:       CCE30392.1  [L=364]
Description: probable homoserine dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-51  174.4   0.0    2.5e-51  174.0   0.0    1.1  1  Homoserine_dh  Homoserine dehydrogenase
    1.5e-20   74.0   0.0    2.8e-20   73.1   0.0    1.4  1  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
       0.14   11.3   0.1        0.2   10.8   0.1    1.2  1  IGPS           Indole-3-glycerol phosphate synthase


Domain annotation for each model (and alignments):
>> Homoserine_dh  Homoserine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.0   0.0   4.2e-55   2.5e-51       1     173 []     155     356 ..     155     356 .. 0.91

  Alignments for each domain:
  == domain 1  score: 174.0 bits;  conditional E-value: 4.2e-55
                    --HHHH.HHTCTTSEEEEEEEE--HHHHHHHHHHHCHT...T-HHHHHHHHHHTTSS-SSTHHHHTTHHHHHHHHHHHHHHCTTT-.-GGGSEE-- CS
  Homoserine_dh   1 Piiktl.keilsgdritrieGilngtlnyiltemeeeg...asfsevlkeaqelGyaeaDptdDveGlDaarKlailarlafglev.eledveveg 91 
                    P+i+tl +++ +gd++t+ieG+++gt++++++ ++ ++    ++s+ +k+a+elGy+e+Dp+dD++GlD+arKl+ilarla gl+v ++++++ve+
     CCE30392.1 155 PVISTLkDLVETGDEVTKIEGVFSGTMSFLFNSFAPTSgggGKWSDEVKKAKELGYTEPDPRDDLNGLDVARKLTILARLA-GLPVeSPTSFPVES 249
                    9**********************************54335577**************************************.***977999***** PP

                    ST...............TS-HHH....HHHHHCTTEEEEEEEEE...C.EEEEEEEEEETTSGGGHSSST-EEEEEEESSSEE..EEEEES-SSHH CS
  Homoserine_dh  92 is...............kltaed....ikeakeegkvlklvasa...v.earVkpelvpkshplasvkgsenavlvetdrlge..lviqGpgaGae 162
                    +                kl+a+d     k+a++ +kvl++v+s+   + +++V+++ +++shp+a +kgs+n+++++t+r+g+  l++qG+gaG++
     CCE30392.1 250 LIpkelescssgdefleKLPAFDqqmdEKKASAGDKVLRFVGSIdvaTkSVKVGLQTFEPSHPIAALKGSDNIISFYTKRYGSnaLIVQGAGAGGD 345
                    88888888888888888777776665588888999********8865169********************************************** PP

                    HHHHHHHHHHH CS
  Homoserine_dh 163 pTAsavlsDll 173
                    +TA++v +Dl+
     CCE30392.1 346 VTAMGVTADLI 356
                    *********97 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   4.6e-24   2.8e-20       1     117 []      13     147 ..      13     147 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 4.6e-24
                    --SHHHHHHHHHHHH---S...SEEEEEEEEESS.EEE-TT.........HHHHHT--CB---HHHHHHHH....S-EEEEE-S--HHHHTTHHHH CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqse...ielelvavadrd.sllskd.........rkallasealtldlddliahl....dpdvvVEcasseavaelvlka 79 
                    G+G++G+ +l+ql++ + +    +l l+ +a ++  l ++d         +  l+ s +++++l+dl++ l       ++V+++ss+ va+ ++ +
     CCE30392.1  13 GAGGVGKCFLSQLRDLAVRrpsPKLSLCYIATSRkALYNDDyssinlesaIDTLASSSKTPQSLPDLVEYLtkapGKAIIVDNTSSQDVADAYPTV 108
                    99***************9999999**********7777777********99999999************88998669******************* PP

                    HHTTEEEE-S--CGGG.-HHHHHHHTSSSTTS--.EE-G CS
  NAD_binding_3  80 Lkagkdvvtankgala.dealyeeLreaaeangakiyve 117
                    Lkag++vvt+nk+a++ + +l++++++a+ a+gak+y+e
     CCE30392.1 109 LKAGVSVVTPNKKAFSgSYKLWQDIFQASAASGAKVYHE 147
                    *************************************97 PP

>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   3.4e-05       0.2      45     107 ..      73     136 ..      43     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.4e-05
                 TTS-EEEEEE-SEETTTEESBSS--HHHHHHHHTTT.-SEEEEE-.-CCCC---CCHHHHHHHH CS
        IGPS  45 ekklaliaEvKkaSPskgliredfdpaeiAkkyeeagAsaiSVLt.eekyFqGsledLrevrqa 107
                  ++l  ++E+  + P k  i +++  +++A +y +   + +SV t ++k F Gs++  +++ qa
  CCE30392.1  73 PQSLPDLVEYLTKAPGKAIIVDNTSSQDVADAYPTVLKAGVSVVTpNKKAFSGSYKLWQDIFQA 136
                 555666899999************************9********55789****9988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2989.10
//
Query:       CCE30393.1  [L=329]
Description: uncharacterized protein CPUR_04241 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-28   96.5  19.4    8.5e-28   96.5  19.4    3.0  3  DUF4078     Domain of unknown function (DUF4078)
  ------ inclusion threshold ------
        1.4    7.9  10.1         11    5.0   0.0    2.3  2  Atg14       Vacuolar sorting 38 and autophagy-related subunit
        4.9    6.8  32.4      0.031   14.0   9.3    2.3  2  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
        6.9    7.2  15.8       0.28   11.7   6.2    2.5  3  APG6_N      Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> DUF4078  Domain of unknown function (DUF4078)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   2.4      0.94   4.2e+03      56      80 ..      80     105 ..      61     111 .. 0.48
   2 ?   -0.8   1.5      0.44     2e+03      53      71 ..     169     186 ..     156     201 .. 0.61
   3 !   96.5  19.4   1.9e-31   8.5e-28       1      86 []     226     311 ..     226     311 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.94
     DUF4078  56 eeTeeqRkkreelkekRkae.leerl 80 
                 +e     ++ ++l+ +R+++  ++r+
  CCE30393.1  80 KEVAGTEEESQQLALARRKMeDKARR 105
                 44444444555544444333033333 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.44
     DUF4078  53 elreeTeeqRkkreelkek 71 
                 ++r+ T+ +++++e ++++
  CCE30393.1 169 RMRRGTKAEKERTE-RRAR 186
                 45555544433333.3333 PP

  == domain 3  score: 96.5 bits;  conditional E-value: 1.9e-31
     DUF4078   1 qmeelareeeesatppeevhYdaekEvRtkGvgfyaFskDeeeRkkqmeeLeelreeTeeqRkkreelkekRkaeleerlkkirer 86 
                 +meelar++++satppe++hYda++E+RtkG+gfy+FskDe+ R+k+m++L+e+r++Tee+Rk+re+++++R++e+++r++++ +r
  CCE30393.1 226 KMEELARKRDRSATPPEQKHYDADSEIRTKGTGFYKFSKDEDARAKEMAHLAEERQRTEEERKTREAQRAARRQEIDQRRREMGAR 311
                 69*******************************************************************************99765 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0024        11     212     230 ..      20      38 ..       5      43 .. 0.90
   2 ?    2.1   8.4     0.018        82      70     117 ..     267     314 ..     261     329 .] 0.74

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0024
       Atg14 212 eeIsasLsyiaqLlaLvsh 230
                  ++s+sL ++aqL++L+sh
  CCE30393.1  20 TTLSSSLDFTAQLTSLISH 38 
                 589***************9 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.018
       Atg14  70 eelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsd 117
                 +   +++a l e+ q+ ++ ++++ ++ +++++++ ++++++  Rr++
  CCE30393.1 267 DARAKEMAHLAEERQRTEEERKTREAQRAARRQEIDQRRREMGARRAQ 314
                 556778888999999999999999999999999999999999966654 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   9.3   6.9e-06     0.031      81     172 ..      77     186 ..      11     202 .. 0.58
   2 ?   -2.0  15.8      0.54   2.4e+03      90     181 ..     225     308 ..     190     315 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.9e-06
                 -........--------------------------............---------------------------------------------------- CS
  Cwf_Cwc_15  81 e........ekekkeeeeeeeeeeakrrkeellee..........areidaddedseeeeeeeeeesdddsdsdsdddddedetaeLlrELekikrera 161
                          e+e+++ + ++++ e+k r+ ++++           a  +d d +  e+ e +    s+++s+sd+d dd+ +e  e   E+ +++r  +
  CCE30393.1  77 LtlkevagtEEESQQLALARRKMEDKARRYAAMKRgdyvpkeneaAPLVDFDRKWAEDVEGKGGGYSSSSSSSDDDGDDEANEIIEYEDEFGRMRRGTK 175
                 032223333222222222222223333332322223333333332346777777776655555555555666666666666666677789********* PP

                 ----------- CS
  Cwf_Cwc_15 162 eekerkereka 172
                 +eker er ++
  CCE30393.1 176 AEKERTERRAR 186
                 *****999865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.54
                 ------------------..------------------------------------------------------------------------ CS
  Cwf_Cwc_15  90 eeeeeeeakrrkeelleeareidaddedseeeeeeeeeesdddsdsdsdddddedetaeLlrELekikreraeekerkerekaeeeekeree 181
                 e+ ee ++kr ++++  e+++ dad+e +++             + ++d+d    e a+L  E ++  +er+  ++++++ ++e ++++re 
  CCE30393.1 225 EKMEELARKRDRSATPPEQKHYDADSEIRTK--------GTGFYKFSKDEDARAKEMAHLAEERQRTEEERKTREAQRAARRQEIDQRRREM 308
                 3444455666666666677788888887754........333444556677778999**************999999999999998888875 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2     0.055   2.5e+02      50      90 ..      76     102 ..      15     114 .. 0.61
   2 ?   -2.7   0.1       1.7   7.8e+03      86      86 ..     176     176 ..     146     201 .. 0.54
   3 ?   11.7   6.2   6.3e-05      0.28      44     111 ..     243     314 ..     214     324 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.055
      APG6_N  50 eeleeeleklekeeeelleeLkelekereeleaelaaleee 90 
                 +                l+e + +e+e ++l+ ++++ e +
  CCE30393.1  76 KL--------------TLKEVAGTEEESQQLALARRKMEDK 102
                 22..............3333344444444444333333333 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
      APG6_N  86 a 86 
                 a
  CCE30393.1 176 A 176
                 1 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 6.3e-05
      APG6_N  44 k....qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqle 111
                 +     d+e++     + k +k+e++  +e++ l +er++ e+e+++ e++ +a+ +e ++  re  + + +
  CCE30393.1 243 QkhydADSEIRTKGTGFYKFSKDEDARAKEMAHLAEERQRTEEERKTREAQRAARRQEIDQRRREMGARRAQ 314
                 133333444444444478899999999999999999999999999999999999999999998888775554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1805  (0.100675); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 2499.97
//
Query:       CCE30394.1  [L=461]
Description: probable cross-pathway control protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-06   27.0   2.8      1e-05   25.5   2.8    1.8  1  bZIP_2     Basic region leucine zipper
    2.8e-05   24.1   1.7    6.6e-05   22.9   1.7    1.6  1  bZIP_1     bZIP transcription factor
  ------ inclusion threshold ------
       0.13   12.5   0.0         12    6.2   0.0    2.9  3  PAP_assoc  Cid1 family poly A polymerase


Domain annotation for each model (and alignments):
>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   2.8   1.7e-09     1e-05       8      40 ..     412     444 ..     407     447 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.7e-09
                 XXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   8 rRrkNreAarrsRekkkakeeeleervkeLeee 40 
                 +R +N+ Aar+sRe+k ++ e+l +r+  Le+e
  CCE30394.1 412 KRARNTLAARKSRERKALHVEDLMNRIATLEAE 444
                 899****************************98 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   1.7   1.1e-08   6.6e-05       9      47 ..     412     450 ..     408     458 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.1e-08
                 XX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   9 rkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLks 47 
                 ++++N  aAr+sR+RK   +e L +r ++Le+e    ks
  CCE30394.1 412 KRARNTLAARKSRERKALHVEDLMNRIATLEAERDHWKS 450
                 899*****************************9776655 PP

>> PAP_assoc  Cid1 family poly A polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.028   1.7e+02      48      59 ..     271     282 ..     253     284 .. 0.84
   2 ?    6.2   0.0    0.0019        12      42      61 ..     385     409 ..     361     410 .. 0.68
   3 ?   -1.7   0.0       0.6   3.6e+03      43      56 ..     420     433 ..     411     436 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.028
                 ESSSSEBEETTC CS
   PAP_assoc  48 nrfllaIeDPfe 59 
                 ++++l ++DPf 
  CCE30394.1 271 SPHDLLVQDPFS 282
                 6899*******6 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0019
                 -.....SSEECESSSSEBEETTCCC CS
   PAP_assoc  42 a.....eskernrfllaIeDPfeld 61 
                       +++++ + +++IeDP++++
  CCE30394.1 385 IagvnpRKRDKPLPPIVIEDPNDTT 409
                 14444557789999********986 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.6
                 SSEECESSSSEBEE CS
   PAP_assoc  43 eskernrfllaIeD 56 
                  +k r+r+ l +eD
  CCE30394.1 420 ARKSRERKALHVED 433
                 5678999*****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3450.61
//
Query:       CCE30395.1  [L=546]
Description: related to fluconazole resistance protein (FLU1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-40  136.6  53.8    2.9e-39  135.0  44.7    2.0  2  MFS_1          Major Facilitator Superfamily
    1.1e-12   47.6  12.5    1.1e-12   47.6  12.5    2.7  3  Sugar_tr       Sugar (and other) transporter
    1.1e-08   34.0   2.6    1.1e-08   34.0   2.6    1.9  2  TRI12          Fungal trichothecene efflux pump (TRI12)
    0.00022   20.2   1.5    0.00058   18.8   1.5    1.6  1  PTR2           POT family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0  44.7   6.4e-43   2.9e-39       7     352 ..      78     458 ..      71     459 .. 0.80
   2 !   10.3   3.6   5.3e-05      0.24     121     182 ..     442     503 ..     440     508 .. 0.92

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 6.4e-43
       MFS_1   7 lsalarsilgpalplalaedlgispseigl.lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalf 103
                  +a+++s+ ++a+p  ++ ++gis ++++   ++++ +g++++ +++G+l++ fGrr + + +++lf+l++l++++ +++w  +lv+r ++G+++ga +
  CCE30395.1  78 NTAMSSSLPAMAVP-NITAEFGISSTTANAlPISVFLIGYIFGPIIWGPLTEHFGRRDLSIHTFILFSLFTLACAL-APSWnSFLVFRTFCGVCGGAPI 174
                 45666666777777.9***********88846777999********************999999999999555556.77788***************** PP

       MFS_1 104 pagaaliadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll................peepperkrkspk 185
                 +++a ++ad+f + + rgra+++++ ++  G++++p+++g+ ++s+gWr++f++  i +  + ++++++l                + e p  +  +p+
  CCE30395.1 175 AIVAGILADIFGDhRTRGRAFAVFMCATVWGPLFAPIVSGYTSTSIGWRWTFWVGLICA-GVTLCIIVWLpetfgpillarrakrmRKETPGIRIIAPR 272
                 *************9***************************************865555.555777899956666666555555544444444444444 PP

       MFS_1 186 eeekgtgpaplvpawkallkdpvlw........illialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdr.. 270
                 e+    ++++++++++ + ++p  +        +  + l+l+f++f++ ++  p+++++ +gls    gl+++   ++++++++++++ ++  ++ r  
  CCE30395.1 273 EL----EESSVSKLLTVVITRPIRMlaselivtATCAYLALVFAIFYMCFQAYPVIFRDLYGLSpgitGLIYLP--VGIGSVLSLGVFWFWDGYLARaq 365
                 44....777777777777777755234554555566666666889999*******99*******9998888888..99999999999999999999977 PP

       MFS_1 271 ........lgrrrrlllallllllaalglallavtssavllllvlvl....iGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                             rrl la+l++ l +++l++l+++ +a++  +v +l    +G+g+ + f +ll++++d++    a++a+++++ ++s+ +a+ 
  CCE30395.1 366 hrgaswakREEFRRLPLAVLGGPLYVISLFWLGFSAKASVPFYVPMLagipFGMGYILLFMALLNYLTDSYE-IFAASANAAASCCRSILAAVL 458
                 877665444449***********************666655554444467899999999************5.9999**********9888775 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 5.3e-05
       MFS_1 121 raigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrk 182
                 +a++ +s + s+ a++ pl+ + +   lg +++f +++++s++++ + +++++  p+ r+r+
  CCE30395.1 442 SANAAASCCRSILAAVLPLATSHMFRRLGISGAFALIGGLSAVMCAIPFIFIWKGPSIRARS 503
                 6889999999************************************999****999988775 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6  12.5   2.4e-16   1.1e-12      14     194 ..      77     246 ..      64     268 .. 0.82
   2 ?   -3.0   0.6      0.53   2.4e+03     347     362 ..     303     318 ..     277     329 .. 0.50
   3 ?    0.4   1.4     0.052   2.3e+02     384     437 ..     440     493 ..     435     496 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 2.4e-16
                 HHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHH CS
    Sugar_tr  14 YdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlv 112
                  +t++ ++  ++        +  s+++         l  s+fl+G i+G ++ g+l++ fGR++  + + +lf+  ++ +a+a+   s+  ++v R ++
  CCE30395.1  77 LNTAMSSSLPAMAVPNITAEFGISSTTA------NALPISVFLIGYIFGPIIWGPLTEHFGRRDLSIHTFILFSLFTLACALAP---SWNSFLVFRTFC 166
                 5555555544444444444444444433......46999*********************************************...************ PP

                 HHHHHHHHHHHH.HHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS--- CS
    Sugar_tr 113 GigvGlasvlvP.myisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPES 194
                 G++ G+  ++v  ++++ +   + Rg+   ++  a+++G l+a i+   ++++ +   wr+++++ l+ a + l ++++lPE+
  CCE30395.1 167 GVCGGAPIAIVAgILADIFGDHRTRGRAFAVFMCATVWGPLFAPIVSGYTSTSIG---WRWTFWVGLICAGVTLCIIVWLPET 246
                 *****9766665155555679999********************99877776666...************************9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.53
                 ..CHHHHHHHHHHHHH CS
    Sugar_tr 347 aasivaivfialfial 362
                   +++a+vf ++++++
  CCE30395.1 303 TCAYLALVFAIFYMCF 318
                 2333344444433332 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.052
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS CS
    Sugar_tr 384 Rskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffv 437
                  ++a a a ++  +   +  l +  ++ ++g  + f++ +gl ++++ + f+f+
  CCE30395.1 440 AASANAAASCCRSILAAVLPLATSHMFRRLGISGAFALIGGLSAVMCAIPFIFI 493
                 5789999999*********************99999999999999999999986 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   2.6   2.5e-12   1.1e-08      53     224 ..      76     249 ..      52     288 .. 0.80
   2 ?   -1.9   0.2      0.19   8.5e+02     211     270 ..     350     409 ..     336     435 .. 0.64

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 2.5e-12
       TRI12  53 vvatyfvlqasasalpnilqdvgqsen..sslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaag.pa 148
                 v+ t +     a a+pni  + g s    ++l  +++ +g     ++ g lt+ fgrr + i t il  + ++  + a  +n++l   t+ gv+ g p 
  CCE30395.1  76 VLNTAMSSSLPAMAVPNITAEFGISSTtaNALPISVFLIGYIFGPIIWGPLTEHFGRRDLSIHTFILFSLFTLACALAPSWNSFLVFRTFCGVCGGaPI 174
                 55566666667899*******998865116788999********************************999999999****************988344 PP

       TRI12 149 gasplfvgelm.snktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaq 224
                      ++ +++   +t+   + +    +v     +p +    +    wrw f++ +i + +++  i+vw  p +f  
  CCE30395.1 175 AIVAGILADIFgDHRTRGRAFAVFMCATVWGPLFAPIVSGYTSTSIGWRWTFWVGLICAGVTL-CIIVW-LPETFGP 249
                 44455556665156788888888888888888899***999****************987653.34555.5666654 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.19
       TRI12 211 llivvwyyppsf..aqlhgkkvrkreelakldwigiilvivgvslfllgvswggkpnspwns 270
                  l v w++   +  aq  g   +kree+ +l    +      +slf lg s   k   p+  
  CCE30395.1 350 SLGVFWFWDGYLarAQHRGASWAKREEFRRLPLAVLGGPLYVISLFWLGFS--AKASVPFYV 409
                 35577777765422678899999****999876655555566788888876..345555555 PP

>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.5   1.3e-07   0.00058      57     121 ..     177     239 ..     173     243 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.3e-07
                 HHHHHCTTT-SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHH CS
        PTR2  57 vSafgadqfeekdprersrfFsiFyfsiNvGSLlsliitpylqenvgyplgFgipavlmiiallv 121
                 v+ ++ad f  +d+r r+r F +F+ +   G L+++i+ +y     g+ ++F +  ++  ++l +
  CCE30395.1 177 VAGILADIF--GDHRTRGRAFAVFMCATVWGPLFAPIVSGYTSTSIGWRWTFWVGLICAGVTLCI 239
                 566777777..567889999********************************9999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 4021.36
//
Query:       CCE30396.1  [L=1379]
Description: uncharacterized protein CPUR_04244 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-22   80.9   0.1    1.8e-22   80.1   0.1    1.3  1  TRF              Telomere repeat binding factor (TRF)
    4.9e-05   23.4   0.0    0.00014   22.0   0.0    1.9  1  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> TRF  Telomere repeat binding factor (TRF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.1     2e-26   1.8e-22       5     223 ..     139     358 ..     135     367 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 2e-26
                 .HHHHHHHHHHHHHHHHTHHHHHHHHHHH.TSHHHHHHHHHHHHCHCHCCCCHHHHHHHHHHHHHHSHHHHHHHHHHHHTTTHTTEECSSSTS-HHHHH CS
         TRF   5 LplLdnlstqllrllaespyqkilaivsepdsefgeafdtllslfertkklysekkpllspsilkkressiestlrkinlatfllsvlgtleigflela 103
                 +  L+nl+ ++l +l++ p+++++ +v  +dse +++f++l+  fe++++lys ++ l+ +++l+ ++ +   ++  +nla+  + + +  + +++  +
  CCE30396.1 139 IHALGNLALSMLLILVQPPFEDTIRLVRGTDSEHKRSFHQLKISFENVRQLYSAESVLM-ADQLDFKDDESKTFVELANLAQLGSWLVDGSPKALSSAD 236
                 6789*************************************************666666.5*******************************9****** PP

                 HHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHH.TT-HHHHHHHHHHHS.SSSTCCHH......HHH..HHHHHTTHHHHHHHHHHHHHHHTC.. CS
         TRF 104 enfldifcpenelgkllkpqgvLyleLktqayisalk.eaeerskeeiLddlf.pddlediLlerrngklltpsetdfverckkrkekLlniinekd.. 198
                 +nfl +f  +   ++l    ++Lyl++ktq  i  l  +++e++ e+++ ++f  + led+L+e++ g  l++  + fv+ +++rke+L   ++e++  
  CCE30396.1 237 DNFLALFQCQL--SNLPPGMTELYLSIKTQRAIEFLVeKEPEKPSEQVIGEVFvTQGLEDVLKEKHGGGELSTADQSFVSSLQTRKETLEGEVKEQAep 333
                 *******8888..**********************9989************994567999******************************99999999* PP

                 CHHHHCS-HHHHHHHHHHHHHCCCH CS
         TRF 199 keLlqkyswesflkellsYvsknms 223
                  +L +k+  e++l++ lsY  ++++
  CCE30396.1 334 AALREKHPAEDLLRSYLSYARSKLK 358
                 *******************998876 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.6e-08   0.00014       1      46 []     613     669 ..     613     669 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.6e-08
                      CSSSBHHHHHHHHHHHHHHT.TCHHHHHHHHT.S.........S-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhG.nrWkkIaerlg.g.........Rtekqcrsrwrnyl 46 
                      r +Wt+eE++ L  ++ +     W+ I+  +g +         Rt  q +++ rn++
       CCE30396.1 613 RRPWTQEEEKALMAGLDMVKgPHWSQILTLFGqNgtisdilrdRTQVQLKDKARNLK 669
                      689***************77688*********84689*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1678  (0.0935914); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.33u 0.31s 00:00:01.64 Elapsed: 00:00:00.48
# Mc/sec: 8573.29
//
Query:       CCE30397.1  [L=438]
Description: related to beta (1-3) glucanosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-96  322.3   0.4    6.5e-96  321.3   0.4    1.5  1  Glyco_hydro_72   Glucanosyltransferase
     0.0085   15.2   0.1      0.023   13.8   0.1    1.6  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom


Domain annotation for each model (and alignments):
>> Glyco_hydro_72  Glucanosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.3   0.4  7.2e-100   6.5e-96       5     292 ..      22     300 ..      19     341 .. 0.94

  Alignments for each domain:
  == domain 1  score: 321.3 bits;  conditional E-value: 7.2e-100
                     SSTTS--EEEETTEEEETTT-BBE-EEEEE--BE------SSB-GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEE CS
  Glyco_hydro_72   5 aeeaveaieikgnkffdsksgeqfyikGvdyqpggseevsslvdpladaeaCkrdikllkelgvntvrvyavdnskdhdeCmkalsdagiyvild 99 
                     + +a+e+ie +gnkff +k+g+qf+ikGv+yq   +       dpl da +C+rd +l+kelgvnt+rvy vd++++h+ Cmka++dagiy+++d
      CCE30397.1  22 SVAALEPIEAVGNKFF-NKNGSQFFIKGVAYQLVPE-------DPLVDAAQCQRDFSLMKELGVNTIRVYHVDPHAQHEGCMKAMNDAGIYLLVD 108
                     568899**********.799************9887.......9*************************************************** PP

                     S-BTTBS--TTS-..---HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EEEEE---TTTHHHH CS
  Glyco_hydro_72 100 lnepkesinradpassynedllervfkvidafkeyknvlgffaGnevvndksntaasayvkavvrdvkeyikkkkerkiPvGysaaddaelrvel 194
                     l + ++ i+ +     +n+++ +r+ +v+daf++y+nvlgff Gne + +k+++ a++y+ka+ rd+k+y  +k +r+iP+Gysaad+ +lr  l
      CCE30397.1 109 LDTFDTYIEASGL--YWNSTQHDRYSEVLDAFHSYNNVLGFFIGNENIAKKEDSPAAPYLKAAARDMKAYRDRKGYRTIPIGYSAADIVQLRPML 201
                     ********98877..9******************************************************************************* PP

                     HHHTTBTT-...--S-EEEEE----SS--HHHHSHHHHHHHHTT-SS-EEEEEE---SSSS---THHHHHTSHHHHTTEEEEEES-SB--SSS-- CS
  Glyco_hydro_72 195 aeylaCgded.dkadffglnmyeWCgkssfktsGydertkefenysiPlflseyGCnkvtprkftevealyseemtsvfsGGlvyeyseeannyG 288
                      +yl+Cg ++ + +dff+ln+y+WC+ s+f+ s y+  +k  +++ +P+f+se GCn   pr++++ +a+++e m + +sG ++ye+ +e+n+yG
      CCE30397.1 202 QDYLTCGGNSsEIVDFFALNSYSWCDPSTFEQSSYNVLQKYAKDFPVPMFFSETGCNVPGPRVWDDQDAIFGEAMINDWSGSIIYEWIQETNHYG 296
                     ******98773589********************************************************************************* PP

                     SEEE CS
  Glyco_hydro_72 289 lvki 292
                     l+++
      CCE30397.1 297 LITY 300
                     *976 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   2.5e-06     0.023       6      83 ..      35     111 ..      31     174 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.5e-06
                      TEEEETTEEE-EEEEEE-S-BTTTBTS--HHHHHHHHHHHHHCT--EEEETTS.-..-SHHHHHHHHHHT-EEEEE-S-B- CS
  Glyco_hydro_2_C   6 kllliNgkrllfkGvnrHedadrrGraideellvkDlkllkqlniNavRtsHY.P..nqeevyelcDeyGlyvidEanlet 83 
                      k +  Ng ++++kGv        +   +d  +  +D+ l+k+l++N++R  H  P  ++e  ++ +  +G+y++ +    t
       CCE30397.1  35 KFFNKNGSQFFIKGVAYQLV--PEDPLVDAAQCQRDFSLMKELGVNTIRVYHVdPhaQHEGCMKAMNDAGIYLLVDL--DT 111
                      55666777777777764332..23457899999*******************63422677899*********98543..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3273.96
//
Query:       CCE30398.1  [L=58]
Description: uncharacterized protein CPUR_04246 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 446.47
//
Query:       CCE30399.1  [L=53]
Description: uncharacterized protein CPUR_04247 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   16.0   3.4      0.024   15.1   3.4    1.4  1  SMP       Seed maturation protein


Domain annotation for each model (and alignments):
>> SMP  Seed maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   3.4   1.3e-06     0.024      18      57 ..       5      39 ..       3      41 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.3e-06
         SMP 18 pVtpeDAaavqaAEaraageartapgGvAaaaqaAAdaNe 57
                p t+eDAa++q A a   g+a         +aq+A d+N+
  CCE30399.1  5 PMTKEDAARIQRAQAKEGGDAD-----FVRRAQSAGDKNA 39
                789****************554.....7799999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 421.05
//
Query:       CCE30400.1  [L=277]
Description: uncharacterized protein CPUR_04248 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-15   56.1   0.0    4.3e-15   55.3   0.0    1.4  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
  ------ inclusion threshold ------
       0.18   12.2   0.0       0.33   11.3   0.0    1.4  1  DUF4413        Domain of unknown function (DUF4413)


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   4.8e-19   4.3e-15       3      86 .]     127     209 ..     125     209 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 4.8e-19
                    HHHHT------TT....--HHHHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHHHHHHHH CS
  Dimer_Tnp_hAT   3 dkyleelpvlrrkeksefdvlewwkensskyPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallcieqwl 86 
                    ++ylee + +++   +efd++++w +++   P ls++a dvL++p +s  +Er Fs ++  l+++r++l+ ++ e   c++qwl
     CCE30400.1 127 RRYLEE-DPIPFLDGEEFDPIQYWLKRRVTQPQLSQMALDVLACPPMSDDCERLFSSAKMLLSDRRSRLKMDIIEGGECLRQWL 209
                    78****.99998766********************************************************************7 PP

>> DUF4413  Domain of unknown function (DUF4413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.7e-05      0.33      54      95 ..      34      74 ..      22      80 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.7e-05
     DUF4413 54 llaiaviLDPryKlkyvefalkkiygedakkvvdkvrdklke 95
                ++ + v+LDPr K++ +  ++ +  +++a  +v +v++ + +
  CCE30400.1 34 TYYLCVVLDPRAKMSWFHDTWDMYPDTKA-AWVPEVQRLMLQ 74
                566779************99988776654.477777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2159.84
//
Query:       CCE30401.1  [L=107]
Description: uncharacterized protein CPUR_04249 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 778.82
//
Query:       CCE30402.1  [L=65]
Description: uncharacterized protein CPUR_04250 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00059   20.2   0.7    0.00072   20.0   0.7    1.2  1  SMP       Seed maturation protein


Domain annotation for each model (and alignments):
>> SMP  Seed maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.7     4e-08   0.00072      17      58 ..       5      44 ..       1      45 [. 0.90

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4e-08
         SMP 17 kpVtpeDAaavqaAEaraageartapgGvAaaaqaAAdaNer 58
                +  ++eDA ++q+  a   +  + +pg   a++q+A d+Ne+
  CCE30402.1  5 QTMAKEDASRIQSSQAKSGA--NMTPGDFTARVQSAGDRNEN 44
                67789*************99..777999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 488.10
//
Query:       CCE30403.1  [L=2148]
Description: polyketide synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-68  230.0   0.1    7.7e-68  228.8   0.1    1.7  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    1.9e-35  121.4   0.5    5.1e-35  120.0   0.5    1.8  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    2.5e-26   91.4   0.1    1.5e-25   88.9   0.0    2.4  1  HTH_51           Helix-turn-helix domain
    6.1e-19   68.7   0.7    1.2e-18   67.6   0.7    1.5  1  Acyl_transf_1    Acyl transferase domain
    3.8e-14   53.2   0.0    4.2e-13   49.9   0.0    2.8  2  Methyltransf_12  Methyltransferase domain
    6.7e-13   48.8   0.0    1.5e-11   44.4   0.0    2.9  3  Methyltransf_23  Methyltransferase domain
    4.4e-12   46.2   0.2    1.4e-11   44.6   0.2    1.9  1  PP-binding       Phosphopantetheine attachment site
    4.6e-12   45.8   0.0    8.8e-12   44.9   0.0    1.3  1  PS-DH            Polyketide synthase dehydratase
    9.3e-12   45.2   9.0    8.7e-10   38.7   0.9    3.7  2  SAT              Starter unit:ACP transacylase in aflatoxin b
    2.3e-11   44.2   0.0    2.2e-10   41.1   0.0    2.9  1  Methyltransf_25  Methyltransferase domain
    1.2e-09   38.7   0.0    1.8e-08   34.9   0.0    2.8  2  Methyltransf_11  Methyltransferase domain
    2.3e-08   34.5   0.0    6.7e-08   33.0   0.0    1.8  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    7.1e-07   29.1   0.0    2.3e-06   27.5   0.0    1.8  1  Methyltransf_31  Methyltransferase domain
    7.9e-07   28.7   0.1    2.2e-06   27.3   0.1    1.6  1  Thiolase_N       Thiolase, N-terminal domain
     0.0027   17.1   0.0     0.0057   16.0   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0078   16.0   2.0     0.0098   15.7   0.4    2.1  2  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
      0.009   15.7   0.0      0.024   14.3   0.0    1.7  2  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m
  ------ inclusion threshold ------
      0.017   14.3   0.0       0.41    9.8   0.0    2.5  2  Methyltransf_33  Histidine-specific methyltransferase, SAM-de
      0.089   12.9   0.1       0.62   10.2   0.0    2.5  2  NRho             Rhomboid N-terminal domain
       0.17   11.7   0.0        0.5   10.1   0.0    1.8  1  DUF938           Protein of unknown function (DUF938)


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.8   0.1   8.6e-71   7.7e-68       2     253 .]     391     635 ..     390     635 .. 0.91

  Alignments for each domain:
  == domain 1  score: 228.8 bits;  conditional E-value: 8.6e-71
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllleaa 96 
                    ++va+vGm++rfPg+nd++efwelL++g + ++e+p+dr ++++    +   ++ i++ +g+f+d + +fd++ff++s rea++     r lle++
     CCE30403.1 391 NSVAVVGMACRFPGANDPDEFWELLRAGLSMVREAPSDRLNVNNS---RLAGHANIEV-WGNFIDdALSFDHRFFKKSSREAASWGLEKRKLLEVV 482
                    57**********************************988777777...4555556666.************************************* PP

                    HHHHHHHTS..-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  97 wealedagl..tpeeldgsrvgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    ++ale+ag   + ++   s+ g++iG+ +++y + +   ++    +a++ ++g+ ++ + +gr+s+++g++Gp++t+d+ACsSslva++ a+++++
     CCE30403.1 483 YQALESAGHfrPGASELPSDYGCYIGAVSNNYYDNVGCHPP----NAYS-VIGT-SRGFFSGRLSHQFGFTGPAMTIDSACSSSLVAINSACRAIQ 572
                    ********864445556777**********88554555444....4688.8999.***************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    sge++ a+aGG+++  +p ++  ++aag+lsp+g ck+fd +adG+++GEGv+avvLk+l+ a
     CCE30403.1 573 SGECSRAIAGGTNVFSSPYDYQNLAAAGFLSPTGACKPFDVSADGYCRGEGVAAVVLKSLSAA 635
                    ***********************************************************9876 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0   0.5   5.7e-38   5.1e-35       1     117 [.     643     759 ..     643     760 .. 0.97

  Alignments for each domain:
  == domain 1  score: 120.0 bits;  conditional E-value: 5.7e-38
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      ++vi+gsavn++ +++++t p  ++q +++ k+l++a+ +p++v+yveahgtgt++gDpiE+++++++fg ++rk++l  gS K niGH+ea a
       CCE30403.1 643 LGVIVGSAVNQNYNDAHITVPCSSSQTNVYGKVLNMANASPHSVTYVEAHGTGTQVGDPIECQSIRDAFGGSHRKDTLHFGSLKGNIGHTEASA 736
                      589********77*************************************************************99****************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      Gva+likv+l+++hg+ip ++++
       CCE30403.1 737 GVAGLIKVLLMMQHGTIPGQASF 759
                      ******************99886 PP

>> HTH_51  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   1.7e-28   1.5e-25       1      87 [.    1782    1868 ..    1782    1871 .. 0.97

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 1.7e-28
      HTH_51    1 FeeikkltdqfieetglagylkevlpkqteLvvalvveAFekLgcdlrsakpGqklprikhlpkhkrlvdylYevLeearlvdldgd 87  
                  F+ +k +++  ++etg+ g++++ +p+q+ Lv+a+vve+F kLgcdl+++++G+++++i h+p+h++lv++lY+vLe+a+l++++++
  CCE30403.1 1782 FQGCKGAYEIAAVETGAVGFWEKRYPRQAALVLAYVVETFGKLGCDLKALRAGDRVDMIAHIPQHSKLVRQLYRVLEDAKLIHTNNH 1868
                  899999*****************************************************************************9986 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.7   1.4e-21   1.2e-18       3     264 ..     922    1195 ..     920    1245 .. 0.83

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 1.4e-21
                     EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHHHH CS
  Acyl_transf_1    3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGElA 96  
                     vf Gq     G   e+ + s++ +  ++++dea++s    s+  ++ +++   ++++  +  aL+a q a a ++   G+    +vGHS G l 
     CCE30403.1  922 VFAGQEKDFVGLSKEMVDASARLRSHLDECDEAVRSLGHASLYPAVYEAD--SIQSMSTMHAALFAAQYATAMTWIDNGLSISCIVGHSFGQLT 1013
                     8999999999**************************9999**********..8888888899******************************** PP

                     HHHHCCSSSHHHHHHHHHHHHHHHHHHT.S-EE.CCEECS........HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHH.... CS
  Acyl_transf_1   97 aavvagalsseeallavvlrsrlmmqla.gpgd.maavel.......aeeeeklr.cqddvvgavansprrvvisgsqealrelvervsk.... 176 
                     ++   g+ls+ +a++ vv r  l+ +    +++ m ++           e ++     d++  a+ n+p + v++g++ a+ +l +++      
     CCE30403.1 1014 SLCISGSLSLRDAMRIVVGRAELIENSWgEERGcMMSILApysvvqsILESLNSTsPSDKLEIACFNGPTNHVVTGTSKAIGRLERHITDsdtl 1107
                     *********************99999884444414444336766543222333334789*******************9998887776641112 PP

                     .CC.CCEEECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTS.SSECC-CCEE CS
  Acyl_transf_1  177 .egvgalvenvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsa.aetiplvfve 264 
                      e v++++ +v   +hs+  ++i ++l +   ++  +kp++   ++  ++e++ +e  a    +  r +v f ++v+++  + +  v ve
     CCE30403.1 1108 rESVRVRRLKVTHGFHSALTESILPQLEKLANSVKWNKPTISVELT--TQEAVGQEPGAWLIPQHTRHAVYFSQTVQRIaQKYQSCVWVE 1195
                     1457888999999*************99988889999998877665..68899999999999999************9933334445555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       3.1   2.8e+03      29      89 ..     835     900 ..     815     902 .. 0.81
   2 !   49.9   0.0   4.7e-16   4.2e-13       1      99 []    1972    2072 ..    1972    2072 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3.1
  Methyltransf_12  29 spsai.edakeklakrennnnnnvelealdlldldgg...ssfDlvvas.nvlhhlkdirevldni 89 
                      s++++ + ak+ la+ e++++++v+  +l ++ l+     s  Dlv++  +++  lkd++ +l++i
       CCE30403.1 835 SEASLrVYAKKLLAFVEAQKTSCVDHAQLLSDILFNLadrSNHDLVYSYaGTVTDLKDLENLLKSI 900
                      555565678888999999999999999998777766688899999998879999999999998876 PP

  == domain 2  score: 49.9 bits;  conditional E-value: 4.7e-16
  Methyltransf_12    1 LeiGcGtGsllrallekl....pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirev 85  
                       Le+G+GtG ++++l ++l    ++ ey+++D+sps +++ak+ +++       ++e+ +ld+++++++   +sf  +v+ n++h+++++  +
       CCE30403.1 1972 LEVGAGTGGTTKYLVRHLqklgIPFEYVFTDLSPSLVTAAKRIFKDCP-----EMEFATLDIEKEPSPswlNSFHFIVSMNCIHATRNLTVS 2058
                       8************************************66666666666.....6666666666555556778******************** PP

  Methyltransf_12   86 ldnirklLkpgGrl 99  
                       l++++++L+ +G+l
       CCE30403.1 2059 LKSLHRMLRVDGVL 2072
                       ************87 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.4   2.1e+03       8      39 ..    1176    1206 ..    1169    1251 .. 0.80
   2 ?   -0.3   0.0      0.92   8.3e+02      90     111 ..    1838    1859 ..    1837    1882 .. 0.87
   3 !   44.4   0.0   1.7e-14   1.5e-11       9     163 ..    1952    2123 ..    1945    2125 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.4
  Methyltransf_23    8 elsdklerllpklraggrvLdiGcGtGillev 39  
                       ++s+ ++r+++ + ++  +++ G G+Gi++ v
       CCE30403.1 1176 YFSQTVQRIAQ-KYQSCVWVEAGQGSGIMSLV 1206
                       56777888886.677779*********99764 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.92
  Methyltransf_23   90 evlehvpdppellrqiatllkp 111 
                       +++ h+p + +l+rq+++ l++
       CCE30403.1 1838 DMIAHIPQHSKLVRQLYRVLED 1859
                       6899**************9996 PP

  == domain 3  score: 44.4 bits;  conditional E-value: 1.7e-14
  Methyltransf_23    9 lsdklerllpklragg..rvLdiGcGtGillevl....re..ngfsvtgvDlspeaveiae....kakkaqkdqfdeqeaaepqg....kfd 84  
                       l ++le+++++ +++g  r+L++G+GtG ++++l    ++   +f++++ Dlsp +v  a+      + +++   d ++++        +f 
       CCE30403.1 1952 LGEFLEKAMTNPDRPGkfRILEVGAGTGGTTKYLvrhlQKlgIPFEYVFTDLSPSLVTAAKrifkDCPEMEFATLDIEKEPS--PswlnSFH 2041
                       678899999875555558***************974332222357*********9999886554433333344443334444..14578*** PP

  Methyltransf_23   85 lIvlrevlehvpdppellrqiatllkpgGylllseplasl....kedrllldwlylvpagrhisffsarslkelleeaGlevv 163 
                       +Iv++++++  ++++  l++++++l+ +G+l l e++++      +  l++ w++ + +gr      ++ +k+++ +aG++ v
       CCE30403.1 2042 FIVSMNCIHATRNLTVSLKSLHRMLRVDGVLALVEITRNMfwldIAVGLFEGWWLFN-DGREHAITHEEVWKRDMLRAGFQAV 2123
                       ************************************999944422444566677644.5566677777888999999999866 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.2   1.5e-14   1.4e-11       2      67 .]    1664    1729 ..    1663    1729 .. 0.97

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.5e-14
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  k+++++  v++vpl+ei+p+ +l  lG+DSll++e+l +++ + g+ i+l +++ +p+++++++++
  CCE30403.1 1664 KVLQVLHNVTDVPLDEITPEVSLEQLGIDSLLVTEVLTEMQSTTGINIDLNTFLFFPNVGAICQHV 1729
                  79999************************************************99*********97 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   9.8e-15   8.8e-12      26     290 ..    1331    1607 ..    1315    1609 .. 0.82

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 9.8e-15
                  SS.TTTSEEETTEEB--TTHHHHHHHHHHHHTS---.....-EEEEEEEE----.B--SS.-EEEEEEEEE-TTS-E....EEEEEEE-SS-TT..E CS
       PS-DH   26 elpwLrDHrvdgkvvlPgagylemaleAarqltges....kavelrdvsilkalvlpede.pvevqlslepeedgadrawvefeifSregggee.wt 116 
                   +  L+ H   ++++ P+  y+e++  Aa  l +++    +++ +r+++++ a   p  +  + +++ l++  dg d  +++fe++S  ++ ++   
  CCE30403.1 1331 YVYLLNGHIASNQALAPTSLYIELLSRAAILLKEDAsfdtHVLNVRNLRLQGAR--PGLDpKKNIYIKLTRISDGID--SWAFECTSSLKKCGGdAH 1423
                  566799***************************99899999*********9998..4445599*********88888..9******9998876678* PP

                  EEEEEEEEE-----..........--B--HHHHHH.....HS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE---GGGSST CS
       PS-DH  117 ehatGtvrlaegaa..........aaavdlealqa.....rcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrlpeelagg 198 
                   ha G+v l+++++          +a              +  + ++++ + ++++Y++l ++ + y + +qg++++ +   ea ++++++ + + +
  CCE30403.1 1424 IHAVGEVGLDKRDDplladtfkrwSALI------GyprclSLMNNEDAEGMRGKHLYQAL-RKLVSYDEMYQGMKSISFYGHEAAGKVAAKLNPSLS 1513
                  ***********99988875554432222......13322233344455667899******.777***************999999999999777777 PP

                  TTT-SB-HHHHHHHHHHG..GG.----------EEEEEEEEEEE-S....-BTS--EEEEEE----SS-EEEEEEEE-.SS-BEEEEEESEEEEE CS
       PS-DH  199 esayvlhPallDaalQllaaal.saeaekadaaylPvaierlrvyr.pssaageelwvharleeegarsivadltlvd.edGrvvaeieglrlrr 290 
                  +s+ + +  ++D+ +Q  ++ +   +  +++++ +  +i+r++ ++   +   ++  +++ l+e+++++ v+d+ +++ ++++vv+ + g+++ r
  CCE30403.1 1514 SSEGLYDTPIIDSMMQFAGVIVkWFAHPGDKEVLISQGIDRVVTSGaF-DITAGQWVAYSLLTEDTEERTVCDVYIFEqASQKVVLAFLGFSFSR 1607
                  77877766689*****6656665666789999*************963.334455667777799999***********99********9999875 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.9   9.8e-13   8.7e-10      68     240 .]      88     258 ..      28     258 .. 0.77
   2 !    6.1   1.7    0.0088       7.9      81     236 ..     984    1119 ..     921    1123 .. 0.59

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 9.8e-13
         SAT  68 sglkspalssallciaqlaqfivyleenpeeypspe.......stylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevarvaarleegss 159
                 ++++  a+ ++l+ ++q a f+++l+++ +++ s +       + ++ G+C+G l Aaa+a s+s + L +     vr+a+ +G++v     ++e    
  CCE30403.1  88 DDDSPHAAILPLTILLQTALFLQHLDNTASQVSSFSvtiqslqKFGVQGFCIGFLTAAAIAFSESKEHLAQHVATSVRLAMCIGVYVDSNIFAVE---- 182
                 44444666799*************999999998844589999999*******************************************9888888.... PP

         SAT 160 sssesWslavtglseeelekalaefneekg...lppasrvyisavssss.vtisGpPstleallksskakkkkkksklpiyapyH 240
                      +sla +     +++   ++f+ee+    l + +++yis+v++ + vt++   +  ++l k  +    + k ++  ++++H
  CCE30403.1 183 P----PSLALAV----SVRWRPDQFSEEQVegiLRAYKHAYISCVTDVTcVTVTAQYRDEQRLTKALQEVGLRVK-PISLRGRFH 258
                 2....4444442....3566666666666533233448*********999***9998888888888887777766.888888877 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0088
         SAT   81 ciaqlaqfivyleenpeeyps.pestylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevarvaarleegsssssesWslavtglseee 176 
                  + aq a  + ++        +  + +++vG++ G+l + +++ s sl + +++               + +a+ +e +s  +++  ++++  ++ + 
  CCE30403.1  984 FAAQYATAMTWI-------DNgLSISCIVGHSFGQLTSLCISGSLSLRDAMRIV--------------VGRAELIE-NSWGEERGCMMSIL-APYSV 1057
                  444444444443.......22223567788888888887777777776644332..............23555555.55555666777777.47777 PP

         SAT  177 lekalaefneekglppasrvyisavssss.vtisGpPstl....eallksskakkkkkksklpiy 236 
                  ++++l+++n++++   + ++ i++ ++++ ++++G  +++    +++ +s+ + ++ + ++l+++
  CCE30403.1 1058 VQSILESLNSTSP---SDKLEIACFNGPTnHVVTGTSKAIgrleRHITDSDTLRESVRVRRLKVT 1119
                  7777777777777...6677777777777777777777775555555555555555555555555 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   2.5e-13   2.2e-10       1      97 []    1971    2070 ..    1971    2070 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 2.5e-13
                       EEEET-TTSHHHHHHHCTS...T.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS..SSTTTEEEEEEESTGGGSSHHHHHHHH CS
  Methyltransf_25    1 vLdlGcGtGrltlalakrl...g.kakvtgvDiseemleaareraeeeglnvefvqgdaedlp..fedgsfDlvvssgalhhlsdedlekal 86  
                       +L++G+GtG +t++l ++l   g   +++ +D+s++++ aa++ +++  +++ef + d+e+ p     +sf+++vs++++h +   +l   l
       CCE30403.1 1971 ILEVGAGTGGTTKYLVRHLqklGiPFEYVFTDLSPSLVTAAKRIFKD-CPEMEFATLDIEKEPspSWLNSFHFIVSMNCIHATR--NLTVSL 2059
                       8*****************9766589*****************99964.46*********9966225679*******99999865..78889* PP

                       HHHHHHEEEEE CS
  Methyltransf_25   87 keiarvLkpgG 97  
                       k ++r+L+ +G
       CCE30403.1 2060 KSLHRMLRVDG 2070
                       *******9887 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.8   1.6e+03      70      89 ..    1839    1858 ..    1833    1862 .. 0.90
   2 !   34.9   0.0     2e-11   1.8e-08       1      95 [.    1972    2073 ..    1972    2074 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.8
                       -CCC-CCHHHHHHHHHHHEE CS
  Methyltransf_11   70 vlhhvedpekalkeiaRvLk 89  
                       ++ h+++++k++++++RvL+
       CCE30403.1 1839 MIAHIPQHSKLVRQLYRVLE 1858
                       678999************97 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 2e-11
                       EEET-TTSHHHHHHH....HTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-T..T-EEEEEEES-CCC-CCHHHHHHHH CS
  Methyltransf_11    1 LdvGcGtGrlaeala....krg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfed..nsfDlvvssevlhhvedpekalkei 84  
                       L+vG+GtG  +++l     k g   ++v +Dls+ ++++ak+  ++ + ++ef   d+ek p ++  nsf ++vs +++h   ++   lk +
       CCE30403.1 1972 LEVGAGTGGTTKYLVrhlqKLGipFEYVFTDLSPSLVTAAKRIFKDCP-EMEFATLDIEKEPSPSwlNSFHFIVSMNCIHATRNLTVSLKSL 2062
                       89*************6554445***************99988888887.59*********88888889************************ PP

                       HHHEEEEEEEE CS
  Methyltransf_11   85 aRvLkpgGllv 95  
                       +R+L+ +G+l+
       CCE30403.1 2063 HRMLRVDGVLA 2073
                       ********997 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   7.5e-11   6.7e-08       2      88 ..     763     853 ..     763     877 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 7.5e-11
  KAsynt_C_assoc   2 npeipaleegrlkVvteptpwpggi..vgvNsfGfGGsnvHviLksnkkekrkeesk..eeslprLlvlsgrteeaveallekleehllda 88 
                     np+ipale   + + te+ pw+     + vNs+G  Gsn+ v +++++  +++  ++  + s ++ + ls+ +e++++ +++kl +  + +
      CCE30403.1 763 NPKIPALEPDLMSIATETKPWEASPkmACVNSYGAAGSNAAVAIREAPPVSSAVLAQrsTISGKKPVYLSAASEASLRVYAKKLLAFVEAQ 853
                     9********************998888*******************995554444433478999****************99998774433 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   2.6e-09   2.3e-06       6     113 ..    1970    2078 ..    1967    2112 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.6e-09
  Methyltransf_31    6 rvlDlGCGtGeltfelae...elgpkaevvGiDiseeaielArenaqklgldnveFeqgdieelekl.ledekfDlilsnevlnaladpdki 93  
                       r+l++G+GtG  t+ l +   +lg   e+v  D s+  ++ A+ + +     ++eF   die+ ++  +  ++f +i+s + ++a+ ++   
       CCE30403.1 1970 RILEVGAGTGGTTKYLVRhlqKLGIPFEYVFTDLSPSLVTAAKRIFK--DCPEMEFATLDIEKEPSPsWL-NSFHFIVSMNCIHATRNLTVS 2058
                       89**************998888888999****************977..5668************88777.9******************** PP

  Methyltransf_31   94 leeiervlkpggilliedpr 113 
                       l++++r l+ +g+l++ ++ 
       CCE30403.1 2059 LKSLHRMLRVDGVLALVEIT 2078
                       **************998876 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   2.4e-09   2.2e-06      72     123 ..     546     595 ..     537     616 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2.4e-09
                 S-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS-EEET CS
  Thiolase_N  72 ipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsnaptaes 123
                 +  + pa+t++ +csS+l a++ a+++i++ge++ ++agG+   s  + +++
  CCE30403.1 546 F--TGPAMTIDSACSSSLVAINSACRAIQSGECSRAIAGGTNVFSSPYDYQN 595
                 4..779**********************************999887665555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.3e-06    0.0057      45     158 ..    1964    2081 ..    1953    2097 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.3e-06
                       S--TT.EEEEES-TT-HHHHHHHHHHHHHH...EEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-H CS
  Ubie_methyltran   45 vkrga.kvlDvagGtgDlafklsdsvgekg...kvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDk 132 
                       +++g+ ++l+v +Gtg  +  l +++++ g   + v  D++++++  +++  k+   ++   l  + e  p   +sf ++     +  + + 
       CCE30403.1 1964 DRPGKfRILEVGAGTGGTTKYLVRHLQKLGipfEYVFTDLSPSLVTAAKRIFKDCPEMEFATLDIEKEPSPSWLNSFHFIVSMNCIHATRNL 2055
                       34555689*****************999988889**************99999999999888988888888888****99888899999999 PP

                       HHHHHHHHHHEEEEEEEEEEEE---- CS
  Ubie_methyltran  133 lkaLkeayrvlkpGGrlvvlefskve 158 
                       + +Lk+++r+l++ G l  +e+++  
       CCE30403.1 2056 TVSLKSLHRMLRVDGVLALVEITRNM 2081
                       99*******************98853 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       5.2   4.6e+03       2      17 ..     133     148 ..     132     160 .. 0.79
   2 !   15.7   0.4   1.1e-05    0.0098       3      46 ..     553     596 ..     551     649 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.2
                  EEE-GGGHHHHHHHHH CS
  ACP_syn_III   2 DlnaaCsgfvyalsvA 17 
                   ++  C gf++a ++A
   CCE30403.1 133 GVQGFCIGFLTAAAIA 148
                  57899*****999888 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.1e-05
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGCS-TTTH CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlskilDwkdr 46 
                  + +aCs+ ++a++ A ++i+sg+++r++  g++++s+  D+++ 
   CCE30403.1 553 IDSACSSSLVAINSACRAIQSGECSRAIAGGTNVFSSPYDYQNL 596
                  678*************************************9973 PP

>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.9   6.2e+03       3      31 ..    1174    1202 ..    1174    1204 .. 0.87
   2 !   14.3   0.0   2.6e-05     0.024       2      94 ..    1952    2038 ..    1951    2056 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.9
  Methyltransf_28    3 aiwlleewqalgrpskklrliElGpGkGt 31  
                       a+++ ++ q++ ++ +++  +E G G+G 
       CCE30403.1 1174 AVYFSQTVQRIAQKYQSCVWVEAGQGSGI 1202
                       67899999999999999*********995 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.6e-05
  Methyltransf_28    2 laiwlleewqalgrpskklrliElGpGkGtLmadvLrtlrkflpefyealeyhlvEaSpqlrerQknrLkekakevkk......estvkslg 87  
                       l+++l + +++ +rp k +r++E+G+G+G   + + r+l+k   +     ey+  + Sp+l  + k+  k+  +e++       ++ +    
       CCE30403.1 1952 LGEFLEKAMTNPDRPGK-FRILEVGAGTGGTTKYLVRHLQKLGIP----FEYVFTDLSPSLVTAAKRIFKDC-PEMEFatldieKEPS---- 2033
                       67788888888899997.***********************9777....69**********99988887764.555553342222222.... PP

  Methyltransf_28   88 vkveWle 94  
                          +Wl+
       CCE30403.1 2034 --PSWLN 2038
                       ..34544 PP

>> Methyltransf_33  Histidine-specific methyltransferase, SAM-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.17   1.5e+02      49     125 ..    1177    1252 ..    1169    1276 .. 0.79
   2 ?    9.8   0.0   0.00045      0.41      64     120 ..    1970    2025 ..    1946    2041 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.17
  Methyltransf_33   49 LqehaaeiaaaipaatlvelGsGsseKtrlLLeal..eaaekeltYvplDvseeaLeealealaaeypsleveglvgdy 125 
                       +++  + ia++ ++++ ve G G  + +  L +a+  e+++++  ++pl   +++ ++++++la+++ +l  +g+  ++
       CCE30403.1 1177 FSQTVQRIAQKYQSCVWVEAGQG--SGIMSLVKACvgESQQHQQLFCPLL-LNDITQSNASSLATTVVELWKAGVSVQF 1252
                       6788899***999******9999..5689999999998888899999994.4466777777777777666666666665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00045
  Methyltransf_33   64 tlvelGsGsseKtrlLLealeaaekeltYvplDvseeaLeealealaaeypsleveg 120 
                       +++e G+G++  t++L ++l++ + +++Yv  D+s + + +a++++ ++ p++e++ 
       CCE30403.1 1970 RILEVGAGTGGTTKYLVRHLQKLGIPFEYVFTDLSPSLV-TAAKRIFKDCPEMEFAT 2025
                       89*******************9999**********8755.55666667778777665 PP

>> NRho  Rhomboid N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       4.8   4.3e+03       8      30 ..      16      38 ..      15      38 .. 0.91
   2 ?   10.2   0.0   0.00069      0.62       7      59 ..    1892    1943 ..    1889    1945 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.8
                EE-TTTTGGGHHHHHHTTT--SE CS
        NRho  8 rlPlaeDLsglvqlLqrlkVphR 30
                rlP ++++  l+++L r+k +++
  CCE30403.1 16 RLPPKKEVNRLRHALLRHKCICQ 38
                89****************98875 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00069
                  EEE-TTTTGGGHHHHHHTTT--SEEEEETTEEEEE---SSHHHHHHHHHTTSS CS
        NRho    7 lrlPlaeDLsglvqlLqrlkVphRvsEeegeQvLwvpderlaeqvreLyeryp 59  
                  + +Pl+ DL  +vq+   +   +   E+ g Q+++   ++  +++++Lye +p
  CCE30403.1 1892 ISFPLEADLHKVVQAVGSQLAECLLGEKDGLQIVFGN-KENKKALEDLYEHWP 1943
                  679*******************************987.999999********8 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00056       0.5      27     137 ..    1965    2072 ..    1951    2075 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00056
      DUF938   27 e....rvLEiasGtGqHAvffApalpnl....kwqpsdqdeelresiaawadelalsnlkpPleldvtaevapvereappapasidailsinllHis 115 
                  +    r+LE+++GtG    ++  +l++l    ++  +d  ++l  + +   ++++   +    +ld+ +e+ p         +s+  i+s+n +H +
  CCE30403.1 1965 RpgkfRILEVGAGTGGTTKYLVRHLQKLgipfEYVFTDLSPSLVTAAKRIFKDCPEMEFA---TLDIEKEPSPSW------LNSFHFIVSMNCIHAT 2052
                  333469*****************9997533338999999999999999999999988775...799999988766......478999******9975 PP

      DUF938  116 pwsaveglfagagellkkkavl 137 
                      +   ++++ ++l+  +vl
  CCE30403.1 2053 RNL-TV-SLKSLHRMLRVDGVL 2072
                  433.33.357777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.15u 0.29s 00:00:01.44 Elapsed: 00:00:00.48
# Mc/sec: 13512.71
//
Query:       CCE30404.1  [L=246]
Description: uncharacterized protein CPUR_04252 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-25   90.3   0.0    1.8e-25   89.8   0.0    1.0  1  FSH1           Serine hydrolase (FSH1)
    0.00013   21.9   0.0    0.00092   19.1   0.0    2.1  2  Abhydrolase_2  Phospholipase/Carboxylesterase
     0.0016   19.1   1.2      0.002   18.8   1.2    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0063   16.4   0.3       0.01   15.7   0.0    1.5  2  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.052   13.2   0.0    1.8  2  Abhydrolase_1  alpha/beta hydrolase fold
      0.096   12.2   0.0       0.13   11.8   0.0    1.2  1  PE-PPE         PE-PPE domain


Domain annotation for each model (and alignments):
>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   6.1e-29   1.8e-25       5     189 ..      17     232 ..      13     237 .. 0.78

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 6.1e-29
        FSH1   5 kkiLcLhGytqsgeiFraktsalrkllkklnvelvyldaplelaekadlpkseseeeekseeeeesraWfrkkdekneyegleesldavkdyike.... 99 
                 ++iLcLhG + ++++Fr ++++l + l + n+++v++dap+  +  + +  +         + +++r W+r k++ +   g e  ++ + d+++e    
  CCE30404.1  17 PRILCLHGGGVNAQVFRLQCRGLFRVLGD-NFRFVFPDAPYLSSADPGILPT-------YAHLQPFRRWLRWKQD-QPNPGPEAICQDIDDALREamvq 106
                 69**************************9.***********99555555443.......7999********9995.44445555555555555555555 PP

        FSH1 100 ......ngpfdGiiGFSqGaalaallaslleellkea.....shpslkfailvsGfkleepk.......................yeeyy...eedki. 160
                       +g ++ ++GFSqGa +aa l+  ++  ++++       p++kfa+l++G ++  ++                       +  ++   +ed i 
  CCE30404.1 107 ddiagaTGNWVAVMGFSQGAKIAASLLLRQQL-RTSKlgpspAGPNFKFAVLMAGRAPLISMdpdltdslaladadelttgafaqVTGAFlqgSEDHIl 204
                 677777999***************99987774.444458888****************88778889999999998888888866633344577566656 PP

        FSH1 161 qtptLhvlGelDtvvdeerseaLaeafkn 189
                 ++pt+hv+G++D   + +  + L + +++
  CCE30404.1 205 TLPTIHVHGRKDPGLA-DHQRLLTDFCRE 232
                 ************9998.555666666655 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.1e-07   0.00092      16     129 ..      18     139 ..       9     144 .. 0.69
   2 ?   -0.4   0.0      0.28   8.5e+02     156     168 ..     205     217 ..     185     223 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.1e-07
                    EEEEE--TT--SHHHHHHHH...TT--TTEEEEEE---EEE-GGGTT-EEE-SS-B-......-SSTTS..-B-HHHHHHHHHHHHHHHHHHHHTT CS
  Abhydrolase_2  16 vviflHGlGdsghawaeaak..teaalpnikfifphgpelpvtlnggmrmpaWfdlv......glspek..kedeagikksaekleelidaelkkg 101
                     ++ lHG G +++ + ++ +    +  +n+ f+fp +p+l +  +g    p    l+       +++++     ea+ ++++  l e   ++  +g
     CCE30404.1  18 RILCLHGGGVNAQVFRLQCRglFRVLGDNFRFVFPDAPYLSSADPGIL--PTYAHLQpfrrwlRWKQDQpnPGPEAICQDIDDALREAMVQDDIAG 111
                    5778999999998888777622345568999******99776655443..4444444111111333333334567777777777777666666678 PP

                    --GGGEEEEEETHHHHHHHHHHHT-SS- CS
  Abhydrolase_2 102 ipssriiigGFSqGaalalylaltlpkk 129
                     + + ++++GFSqGa +a  l l ++++
     CCE30404.1 112 ATGNWVAVMGFSQGAKIAASLLLRQQLR 139
                    9*****************9999988875 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.28
                    G-EEEEEEETT-S CS
  Abhydrolase_2 156 klpilqiHgeeDp 168
                     lp +++Hg +Dp
     CCE30404.1 205 TLPTIHVHGRKDP 217
                    699********98 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.2   6.7e-07     0.002       1     104 [.      19     166 ..      19     237 .. 0.51

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6.7e-07
                    EEEE--GC.....G.C.HHHHHHHHCCTCEEEEE--TTS.....T....................S-GGCS--HHHC...........HHH..HHH CS
  Abhydrolase_6   1 vlllHGagssassW.l.vapLaallaagvhvlapDlpGh.....G....................rsdpppldledl...........adl..aal 56 
                    +l+lHG+g +a ++ l  + L + l++ ++ + pD+p       G                                           +d   +a+
     CCE30404.1  19 ILCLHGGGVNAQVFrLqCRGLFRVLGDNFRFVFPDAPYLssadpGilptyahlqpfrrwlrwkqdQ----------PnpgpeaicqdiDDAlrEAM 104
                    79************6356788888899988899***966221111333333333333332222221..........01112222311133345555 PP

                    HCCTT..TTSE....EEEEETCHHHHHHHHHHCC....................EEEEES-....----TTT CS
  Abhydrolase_6  57 ldelaagggpv....vlvGHSlGGalalaaapla..................lvvgvlldp..pptalpagl 104
                    +++ +ag+        ++G S+G+ +a+    l+                  + ++vl+++  p     +  
     CCE30404.1 105 VQDDIAGA--TgnwvAVMGFSQGAKIAAS---LLlrqqlrtsklgpspagpnFKFAVLMAGraP-----LIS 166
                    55555433..2336699******998888...44455445555555555544333355555211.....111 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.3   3.8e+03       1       9 [.      19      27 ..      19      42 .. 0.80
   2 !   15.7   0.0   3.5e-06      0.01      47     145 ..      91     196 ..      85     226 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
                   EEEE--STT CS
  Abhydrolase_3  1 lvyfHGGGf 9 
                   ++++HGGG 
     CCE30404.1 19 ILCLHGGGV 27
                   6899***95 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 3.5e-06
                    HHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---........EEEEEEESE.....-SSTSSTTSHHHHHCHHTTTS CS
  Abhydrolase_3  47 aavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepk........vagqvliyP.....vtdlertesesikkaeeladg 129
                    a ++d+ +alr +  q+  +ga  + ++++G S G+++aa ++lr++ + +           ++ vl+          + +   ++ +++ +lad+
     CCE30404.1  91 AICQDIDDALREAMVQDDIAGATGNWVAVMGFSQGAKIAASLLLRQQLRTSKLgpspagpnFKFAVLMAGrapliS--M-D---PDLTDSLALADA 180
                    456889999999999988999**********************888877432256777777677777766333211..1.2...222222334444 PP

                    SSSCHHHHHHHHHHHS CS
  Abhydrolase_3 130 plltraaldlfwrlyl 145
                      lt+ a+++++ ++l
     CCE30404.1 181 DELTTGAFAQVTGAFL 196
                    4555555555555555 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.7e-05     0.052       1      94 [.      17     136 ..      17     143 .. 0.78
   2 ?   -2.2   0.0      0.87   2.6e+03     196     225 ..     187     219 ..     165     233 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
                    SEEEEE-STTTCGGG..GTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHH....................SHHHHHHHHH.HHHHHCTTS CS
  Abhydrolase_1   1 pvlvilhGlpgssdv..waerglapaLakdgfdvillDlrGvgySspapacinddy....................gtasvaddld.rildalgdd 73 
                    p +++lhG++ ++ v    +rgl++ L +  f+++ +D +   + +p++    ++y                    +  +++ d+d ++++a  +d
     CCE30404.1  17 PRILCLHGGGVNAQVfrLQCRGLFRVLGD-NFRFVFPDAPYLSSADPGIL---PTYahlqpfrrwlrwkqdqpnpgP-EAICQDIDdALREAMVQD 107
                    679************5534678**99999.*******************9...677777888888999999999962.447777775557777666 PP

                    SE.......E.EEEETHHHHHHHHHHHHH CS
  Abhydrolase_1  74 kl.......t.lvGhSmGGmialayaaey 94 
                     +       + ++G+S+G  ia+ ++++ 
     CCE30404.1 108 DIagatgnwVaVMGFSQGAKIAASLLLRQ 136
                    5433333334599*********9998875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.87
                    CHHHHHHHHHC..THHHHS.EEEEEEETTCSSS CS
  Abhydrolase_1 196 dsaklllrlre..lknvla.ptlvisgtsDplv 225
                    ++a++ + + +   + +l  pt+ ++g++Dp  
     CCE30404.1 187 AFAQVTGAFLQgsEDHILTlPTIHVHGRKDPGL 219
                    444555544443312233368888888888865 PP

>> PE-PPE  PE-PPE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.3e-05      0.13      45      68 ..     105     135 ..      80     162 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.3e-05
      PE-PPE  45 a.......agekvvvfGySqgalvasnekar 68 
                         +g+ v+v+G+Sqga +a+  + r
  CCE30404.1 105 VqddiagaTGNWVAVMGFSQGAKIAASLLLR 135
                 123334447888************9875544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1727.67
//
Query:       CCE30405.1  [L=357]
Description: related to short-chain dehydrogenase/reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-38  131.2   0.0    4.9e-38  130.5   0.0    1.3  1  adh_short     short chain dehydrogenase
    7.5e-31  107.5   0.0    1.3e-30  106.6   0.0    1.4  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    5.8e-08   32.8   0.6    2.9e-07   30.6   0.6    1.9  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.0   8.3e-42   4.9e-38       2     189 ..      90     273 ..      89     278 .. 0.94

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 8.3e-42
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 vv+vtG++sG+G+ +a+ +  +Ga+v+v+d +   +     e +  g+ + ++++Dv d ++v ++  +++ +lg+  +L+nNA+i   ++f +ls +e
  CCE30405.1  90 VVVVTGGGSGLGLLVAEVYGMRGASVAVLDVRRG-M-----EGG-GGRGVRFYECDVGDGKRVAEVAMEIERDLGTPTILINNAAIVIGKSFLNLSLDE 181
                 8***************************998844.2.....222.2667************************************************** PP

                 HHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT..EEEEEEEESSBSSHHHHH CS
   adh_short 101 wervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptg..irvnavaPGlvdTdmake 189
                 ++ ++ +Nl g+f + +a+lpaml ++++G+Ivn+sSv+g+ + a+++ Y+A+Ka++++l rsl  el+++   ir + ++PG ++T++ + 
  CCE30405.1 182 IDTSLRINLLGPFYCLKAFLPAMLrSGRGGTIVNISSVIGHLGAAQLTDYAAAKAGLTALHRSLTAELREKHpeIRTVLITPGQLSTPLFHG 273
                 ************************999*******************************************9999*************99875 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0   2.3e-34   1.3e-30       4     190 ..      98     282 ..      93     296 .. 0.91

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 2.3e-34
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdrald 100
                   sg+G  +A+ +  +Ga+v++ d+++       e     g +++ecDV d + v++++ e+++++g+  il+nna+i+    ++fl++s +e+d+ l 
    CCE30405.1  98 SGLGLLVAEVYGMRGASVAVLDVRRGM-----EGGGGRGVRFYECDVGDGKRVAEVAMEIERDLGTPTILINNAAIVIG--KSFLNLSLDEIDTSLR 187
                   89**********************998.....3444456778************************************9..**************** PP

                   HHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGG..TEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2 101 vnlyslfllakaalp.lmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpk..giRvNavspgpikTlaasgikgfdelle 190
                   +nl + f+++ka+lp ++++g  g ivn+ssv ++ + ++ + y+aaKa+l al r+l +el +k  +iR   + pg + T++  g+k  +++ +
    CCE30405.1 188 INLLGPFYCLKAFLPaMLRSGrgGTIVNISSVIGHLGAAQLTDYAAAKAGLTALHRSLTAELREKhpEIRTVLITPGQLSTPLFHGVKTPSRFFA 282
                   ***************66666688***************************************996337******************998776655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.6   4.9e-11   2.9e-07       3     163 ..      91     245 ..      90     253 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 4.9e-11
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 +++tGG  gLGl +a+    +ga+  vl  R++      +         g  v+++++Dv d + v+++  ei+++ ++ +  i+ A ++  k + +++
  CCE30405.1  91 VVVTGGGSGLGLLVAEVYGMRGASVAVLDVRRGM-----E------GGGGRGVRFYECDVGDGKRVAEVAMEIERDLGTPTILINNAAIVIGKSFLNLS 178
                 68**************************999933.....1......2347799************************88888999999999999***** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled.....esldffvlfSSiagllgsagqanYaaaNaflDalaeyr 163
                  +++++ l+  + G     +++ +      +   +v +SS+ g lg+a+ ++Yaaa a l al ++ 
  CCE30405.1 179 LDEIDTSLRINLLGPFYCLKAFLPamlrsGRGGTIVNISSVIGHLGAAQLTDYAAAKAGLTALHRSL 245
                 *********9999976544444432443488899************************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2835.95
//
Query:       CCE30406.1  [L=395]
Description: uncharacterized protein CPUR_04254 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-13   50.3   0.8      3e-13   50.3   0.8    2.5  2  Neugrin        Neugrin
     0.0041   17.3  14.8     0.0041   17.3  14.8    3.0  2  MRP-L20        Mitochondrial ribosomal protein subunit L20
  ------ inclusion threshold ------
       0.81    8.2  11.6        1.1    7.7  11.6    1.2  1  Macoilin       Macoilin family
        1.7    8.5  23.9        2.9    7.8  23.9    1.4  1  Endomucin      Endomucin
        2.1    5.3  10.1        2.6    5.0  10.1    1.0  1  GREB1          Gene regulated by oestrogen in breast cancer
        5.2    5.1  11.9        6.9    4.7  11.9    1.2  1  Hid1           High-temperature-induced dauer-formation prote
        6.3    5.5  15.5        9.2    5.0  15.5    1.2  1  Apt1           Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> Neugrin  Neugrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   8.1         7   1.8e+04     146     169 ..     110     131 ..      58     190 .. 0.46
   2 !   50.3   0.8   1.2e-16     3e-13       6      61 ..     229     284 ..     225     306 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 7
     Neugrin 146 rkkqvqvleeakslvsateekGeq 169
                 ++k   ++e+a+ +  +++   + 
  CCE30406.1 110 QDK--TTIESASTTETSATRDTSL 131
                 111..1222222222211111111 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 1.2e-16
     Neugrin   6 aPeRrLtWeaieqiRYLkeefpeeWtvprLaeGFdvstDvirRvlkskfvPtlerk 61 
                 aP++rL+ +a+  iR L+  fpe +t + La+ F+vs++virRvlksk+ P++e  
  CCE30406.1 229 APRKRLSPDALAGIRALNAQFPEVYTTKTLADKFKVSPEVIRRVLKSKWAPSAEEE 284
                 8**************************************************98764 PP

>> MRP-L20  Mitochondrial ribosomal protein subunit L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3  14.8   1.6e-06    0.0041      41     149 ..     194     294 ..      90     304 .. 0.66
   2 ?   -8.9  10.2         7   1.8e+04     134     161 ..     326     353 ..     312     355 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.6e-06
     MRP-L20  41 tPtkFLPksdprrellaakeskassk....................sselPpvlkkksekekkyhltkedieeirrLraeDPekwsrkkLakkFgcskl 119
                  P++ L                   +                    +++ P  +  ++       l+++  + ir L a+ Pe +++k La kF++s+ 
  CCE30406.1 194 VPAAPL-------------------QdngekpqrakehwqiqkealKAKFPDGWAPRK------RLSPDALAGIRALNAQFPEVYTTKTLADKFKVSPE 267
                 333333...................033333333333222221233555555554433......5********************************** PP

     MRP-L20 120 fvsmvteapkekkkeveaeleavkerWgek 149
                  ++ v++ + +  +e     +  +erW  +
  CCE30406.1 268 VIRRVLKSKWAPSAEE---EQDRQERWFRR 294
                 *****98875444443...34456666544 PP

  == domain 2  score: -8.9 bits;  conditional E-value: 7
     MRP-L20 134 eveaeleavkerWgekrriaredRkkRk 161
                 e++++  + +++W+ek ++   +R+ R 
  CCE30406.1 326 ERRKRAVKWEQEWEEKEKAMELERRARA 353
                 3334445667899999999999999996 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  11.6   0.00044       1.1     226     453 ..      69     290 ..      49     361 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00044
    Macoilin 226 lvevdpvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymenkskskrlsksessgsesellveesvksksssss 324
                 +v v+  +l +  +++++  +++k++  e+r  +ks++    +++++ + + +  s ++     +  ++s+r +++ + +++s +++ +s++s++s+ s
  CCE30406.1  69 VV-VEGEVLGDTAATTTSAANTIKTTPEETRTATKSTQ----NTSEQDKTTIESASTTETSATRDTSLRSRRPTETRKRDKTSATKQPHSSSSSTSPLS 162
                 33.45555555555555444444333333333322222....222222222222333333333444555555555555666666666666666666666 PP

    Macoilin 325 sssnknskkasagsagssnssskkhs..essksvtsss.ssknskkqklpaGkssaalkdaaenslpnnqlskkdalvrLeadikkLkaeLqasrqteq 420
                 ++s++ +++ +    +ss+  s+++s  e s s+  ++  ++n +k + +  +  +++k+a +   p++ + +k  +    a i+ L+a++ +     +
  CCE30406.1 163 TESTPPTHTRTR---DSSKPRSRNLSydEDSTSTVPAApLQDNGEKPQRA-KEHWQIQKEALKAKFPDGWAPRKRLSPDALAGIRALNAQFPEVYT-TK 256
                 665554444433...33333333333003333332222345555555543.344558888888888888876666555555556666666554433.33 PP

    Macoilin 421 elrskissl.tseerslkselqqlkkendllqtk 453
                  l +k++       r lks+     +e++  q++
  CCE30406.1 257 TLADKFKVSpEVIRRVLKSKWAPSAEEEQDRQER 290
                 4555444330233455555555555555444444 PP

>> Endomucin  Endomucin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  23.9    0.0011       2.9      31     139 ..      82     196 ..      19     220 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
   Endomucin  31 itlstststtksastPkaqkklkkstagts........pkgttsselsktslvsttssltttkeeegttttdvsknessttkatvtslslsnavstlqs 121
                 +t+s +++   +++tP+ + + +kst++ts        + +tt+  +++ +  + +  +t t++ ++t+ t+  + +ss+t++  t+ +  + + t +s
  CCE30406.1  82 TTTSAANT---IKTTPEETRTATKSTQNTSeqdkttieSASTTETSATRDT-SLRSRRPTETRKRDKTSATKQPHSSSSSTSPLSTESTPPTHTRTRDS 176
                 22222222...3444544333333333333110000003333332222222.22233455567778888888888889999999999999999999999 PP

   Endomucin 122 sqqktenqssiktke..isv 139
                 s+ ++ n s ++ ++  +++
  CCE30406.1 177 SKPRSRNLSYDEDSTstVPA 196
                 99999999887765521333 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  10.1     0.001       2.6    1102    1230 ..      89     222 ..      56     261 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.001
       GREB1 1102 stdnedeelqedgerpksnssa......vqstsdsvaadaaeessktspvkvekseskdavesglsskasakselseasaaaasaseeakspkasvt 1192
                  + +   ee+ + +++++++s++        st+++ a+  +++  ++ p++++k ++++a++++ ss++s+++ ++e+++++++ ++++++p++   
  CCE30406.1   89 TIKTTPEETRTATKSTQNTSEQdkttieSASTTETSATR-DTSLRSRRPTETRKRDKTSATKQPHSSSSSTSPLSTESTPPTHTRTRDSSKPRSRNL 184 
                  111112222222222222222200000022222221111.122233336677777778888888888888888877778888888888888888777 PP

       GREB1 1193 seeeeseeskekekeslsketesqlsleaseqkealda 1230
                  s  e s++++     + + e+ ++++++ + qkeal+a
  CCE30406.1  185 SYDEDSTSTVPAAPLQDNGEKPQRAKEHWQIQKEALKA 222 
                  77777777766665555555555555555555555555 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  11.9    0.0027       6.9     567     700 ..      75     214 ..      68     258 .. 0.49

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0027
        Hid1 567 vfealrnltlesaseeiersnesarldsideeeeenssessrieesrsesrspslsevpelksslaitddeskaereksatessssqavsqlremseka 665
                 v+  ++++t+++a+  ++  +e+++ ++ +++++e+++  +++ ++++ s +  +s  ++  ++  + d +++a+++ ++++ss+s++ +++  +++++
  CCE30406.1  75 VLGDTAATTTSAANTIKTTPEETRTATKSTQNTSEQDKTTIESASTTETSATRDTSLRSRRPTETRKRD-KTSATKQPHSSSSSTSPLSTESTPPTHTR 172
                 555666777777776666655544444444444444444444444444444443333333333333333.33344444444444444333222222222 PP

        Hid1 666 .rakesaesteesrqesatskksp......sgmsqsaeekft 700
                  r  +++ s++ s +e +ts  ++       + +q+a+e+++
  CCE30406.1 173 tRDSSKPRSRNLSYDEDSTSTVPAaplqdnGEKPQRAKEHWQ 214
                 022222222222333333332222000000233444444444 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  15.5    0.0036       9.2     313     411 ..      94     211 ..      57     226 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0036
        Apt1 313 s.......seeddesdeesessssss........ssssssassssssssrssslelrlkptsstssssssessssssskkrsseesslessaservkss 396
                 +       ++++++s++                 ++++s ++++s +s+r+++  +r+  ++s++++ +s+sss+s  +++s+ +++++++ s++++s+
  CCE30406.1  94 PeetrtatKSTQNTSEQ--------DkttiesasTTETSATRDTSLRSRRPTETRKRD--KTSATKQPHSSSSSTSPLSTESTPPTHTRTRDSSKPRSR 182
                 11212111111111111........111222212333333333333333333333331..123333333344444444455555555555555555333 PP

        Apt1 397 r..............asddleemksRask 411
                 +              + +d  e+ +Ra++
  CCE30406.1 183 NlsydedststvpaaPLQDNGEKPQRAKE 211
                 35555555566666666666666677665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1972  (0.109989); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.40
# Mc/sec: 2957.84
//
Query:       CCE30407.1  [L=253]
Description: related to inhibitor of calcineurin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-48  164.5   0.0    2.9e-48  164.1   0.0    1.2  1  Calcipressin  Calcipressin


Domain annotation for each model (and alignments):
>> Calcipressin  Calcipressin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.1   0.0   1.6e-52   2.9e-48       2     185 ..      48     246 ..      47     247 .. 0.89

  Alignments for each domain:
  == domain 1  score: 164.1 bits;  conditional E-value: 1.6e-52
  Calcipressin   2 ldvvdadnlellralieqtdeilawsllksFrRiivvfsseeaaaavrsqldwekeeilGkklrlYfaqpttidrdaakkhLalPeaeklFlISPPa 98 
                   ld++ +dnle +r+li +t+ i a+++lksFrRi+v f++ ++a+avr+   w++e+i G ++r+Yf+q t++  +++++hLalP+a+klF+ISPP+
    CCE30407.1  48 LDIFRPDNLESIRSLIANTAAIHAFAPLKSFRRIVVSFFDIDSAIAVRRI--WDGEAIIGDRCRVYFGQQTNV--ELKDEHLALPDAGKLFFISPPP 140
                   689***********************************************..****************98876..999******************* PP

  Calcipressin  99 SPPegweqkaedaPnrtvlaeDlqealakLel.......................eekaqlsagk.dktpsvdltlvkvevgeseadeeeadevsdt 171
                   SPP+gwe + edaPn+ v+aeDl++al+kL+                           + l     +++ s  l++v ve++++  +e      s  
    CCE30407.1 141 SPPHGWEVRLEDAPNKLVHAEDLAQALSKLHAnktlgcdspvspvdgpntvgrtrSRSSTLIYSPgQNGGSPALPAVFVEDMTDGPEE-----ISPI 232
                   *******************************999999999999999999999886444444444457777888888877777765554.....4578 PP

  Calcipressin 172 prtkpkivkTarPp 185
                   ++ +p +++T rPp
    CCE30407.1 233 ESGRPLMAHTSRPP 246
                   88899999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2051.66
//
Query:       CCE30408.1  [L=482]
Description: related to mitochondrial phenylalanyl-tRNA synthetase (MSF1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-49  166.5   0.4    2.7e-25   89.3   0.0    2.2  2  tRNA-synt_2d  tRNA synthetases class II core domain (F)
    2.6e-26   91.8   0.0    6.1e-26   90.7   0.0    1.7  1  FDX-ACB       Ferredoxin-fold anticodon binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.2     5e-25   4.5e-21       7     130 ..      72     188 ..      66     226 .. 0.92
   2 !   89.3   0.0     3e-29   2.7e-25     151     245 .]     274     364 ..     239     364 .. 0.89

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 5e-25
                   CTSCTSHSB-SHHHHHHHHHHHHHHCTTCEESS.TTSEEEHHHHTSTTTSTTTSHHHCHTTSEBTCTSSS-ECESEEE-SSTHHHHHHHHTTS-SSE CS
  tRNA-synt_2d   7 pgkrieagklhpltkvleeikeiflelgfeeve.gpevesefynfdaLnvpqdhpaRdmqdtFylkkpekaveekllLRthttavqirtlekkkppi 102
                    ++r++  k hp++ +++ i++ f +  ++  +  + v s   nfd L +p+dhp R+++dt+y+       ++++lLRtht+a q+ + +++  + 
    CCE30408.1  72 TSRRLHLQKDHPVQITRQIIESSFPQPTYKHYSdYHPVVSTQQNFDSLGFPSDHPGRALSDTYYI-------NDTTLLRTHTSAHQADVFRANASDG 161
                   5677888999*********************995566889*************************.......6799******************999 PP

                   EEEEEEEEEBSST-SSSB-SEEEEEEEE CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqvegl 130
                   +iis + v+Rrda+D+ h ++Fhq+eg 
    CCE30408.1 162 YIISAD-VYRRDAIDRNHYPVFHQMEGA 188
                   999987.*******************95 PP

  == domain 2  score: 89.3 bits;  conditional E-value: 3e-29
                   HHCTSTEEEEEEECEETTEEEEEEEEEEECCSSSSEEEEEEEEEE-HHHHHHTT-.TTSEEEEEEEEHHHHHHHHHT-SSGHHHHTT.HHHHGGG CS
  tRNA-synt_2d 151 klfgaevkvrfrpsyfpftePsaevdvylvekkkkwlEllgaGmvrpevleavgideevsgfafGlGveRlamlkygieDiRelvendlrflrqf 245
                   ++ ++ +++r+ ++yfpft Ps e++vy+    ++wlE+lg+G+vr++  +++g+  ++ g afG+G++R+aml ++i+DiR ++++d rfl+qf
    CCE30408.1 274 DFVDEPLRMRWVEAYFPFTSPSWELEVYY---AGDWLEVLGCGVVRQSLYNNAGV-PSQLGWAFGIGIDRIAMLLFKIPDIRLFWSRDQRFLSQF 364
                   56677799*********************...9**********************.7788********************************997 PP

>> FDX-ACB  Ferredoxin-fold anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   6.8e-30   6.1e-26       1      94 []     381     482 .]     381     482 .] 0.99

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 6.8e-30
                 -SS--EEEEEEEEEES..........SS-HHHHHHHHHHHH-TTEEEEEEEEEEESTTS-SSEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHTT. CS
     FDX-ACB   1 SkfPaverDlalvvde..........kveaaelleavreaagellesvqlfDvYrgkklaegkkSlalrltlqskertLtdeevnaaiekvvealekkl 89 
                 Sk+P++ rD+++++++           v++++++e+vr+ ag+++e+v+l+D+++++k  +g+kS+a+ ++++s e+tLt e  na ++ v++al+k+l
  CCE30408.1 381 SKYPPCPRDVSFWLPStsaavggtakGVHENDVMEIVRSVAGDVVEDVRLMDEFTNPK--TGRKSMAFHIVYRSLEQTLTGEAANAYHQDVRNALVKEL 477
                 9************************9********************************..9************************************** PP

                 T-BES CS
     FDX-ACB  90 gaelR 94 
                 g+elR
  CCE30408.1 478 GVELR 482
                 ****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3842.57
//
Query:       CCE30409.1  [L=257]
Description: probable dicarboxylate carrier protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-44  147.9   0.6    2.6e-17   62.5   0.1    3.0  3  Mito_carr  Mitochondrial carrier protein
     0.0055   16.3   0.0     0.0099   15.5   0.0    1.4  1  HisKA_4TM  Archaeal 4TM region of histidine kinase


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.3e-12   1.2e-08      45      94 ..       7      56 ..       1      59 [. 0.87
   2 !   47.9   0.0   1.1e-16   9.5e-13      10      95 ..      69     156 ..      61     158 .. 0.89
   3 !   62.5   0.1   2.9e-21   2.6e-17       5      93 ..     164     246 ..     161     250 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.3e-12
                CSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr 45 saaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94
                 +++  ++ +i+k++G+++ly+Gl+++llr+  +s ++f++ye lk  ++
  CCE30409.1  7 PKSMSGTFVHIVKTDGISALYSGLSASLLRQLTYSTVRFGVYEDLKARYT 56
                3348999**************************************98776 PP

  == domain 2  score: 47.9 bits;  conditional E-value: 1.1e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr  10 laGglagavatlvttPldvvKtrlqtqkksskksksaa..ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 ++++ +g +++++ +  dv+ +r+q ++    ++++++  +ld + ++ +eeG ++ +rG+lpn  r a+ +a ++++y+t+krll +
  CCE30409.1  69 AMAVGSGFLGGIAGNFADVLNVRMQHDAALPPSERRNYkhALDGMVRMAREEGPMSWFRGWLPNSSRAAVMTAGQLATYDTFKRLLVD 156
                 56778999******************99887666655566*********************************************986 PP

  == domain 3  score: 62.5 bits;  conditional E-value: 2.9e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 ++ ++ a+ lag++a+++t P+dv+Ktr++++++++       i++ +++iyk++Glr +++G++p++lr  p + ++fv+ e+ ++++
  CCE30409.1 164 MTTHFSASFLAGLAAATATSPIDVIKTRVMSSAHKQG------IVRLVGEIYKTDGLRWMFKGWVPSFLRLGPHTICTFVFLEMHRKTY 246
                 7889***************************999976......9***************************************999877 PP

>> HisKA_4TM  Archaeal 4TM region of histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.1e-06    0.0099      92     128 ..      56      97 ..      40     107 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-06
   HisKA_4TM  92 grtiaePvfvvlvaaevG.....avaGllaGylaararadas 128
                  rt  eP+f+vl a+ vG     ++aG +a  l++r + da+
  CCE30409.1  56 TRTSGEPTFPVLSAMAVGsgflgGIAGNFADVLNVRMQHDAA 97 
                 69999**********9853333379999999********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1876.08
//
Query:       CCE30410.1  [L=355]
Description: probable DNA-directed RNA polymerase II chain RPB3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-32  111.0   0.0    5.6e-32  110.4   0.0    1.2  1  RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
    2.4e-17   62.1   0.0    3.2e-17   61.7   0.0    1.2  1  RNA_pol_L      RNA polymerase Rpb3/Rpb11 dimerisation domain
  ------ inclusion threshold ------
      0.016   15.5   0.0      0.028   14.7   0.0    1.3  1  Calycin_like   Calycin-like beta-barrel domain


Domain annotation for each model (and alignments):
>> RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   9.3e-36   5.6e-32       1     112 []      61     182 ..      61     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 9.3e-36
                    EEEEECTSSS.HHHHHCHHHCSTCBSSCHHHHHHHHCTT-ETSSSSTTCSEEEEEEEEESSEC....EEGGGCBESSSSCEES.........STTS CS
  RNA_pol_A_bac   1 VeieentsvlqDEvvaHrlgliplvsedvleillnlkelveeeeegeeeksvelkLnvkgpge....vtagdlkledadveiv.........npdi 83 
                    Ve+e n+svl+DE++aHrlglipl+++ v e l++++++  ++e+++e++sv+l+L+++++++    v+a+dl++   + + v           + 
     CCE30410.1  61 VEVEVNSSVLADEFIAHRLGLIPLNAKGVGE-LNYSRDC--DCEQYCEQCSVTLTLHARCTSDdimkVYARDLVVDGRHATQVgapvisdpeGMGC 153
                    77888**************************.*******..9*********************************87777777888899888999* PP

                    EEEEEETT-EEEEEEEEEEESSEECTTT- CS
  RNA_pol_A_bac  84 lIakLrkgqeleleakvkkGiGkehakfs 112
                    lIakLrk+qel+l++++kkGi+kehak++
     CCE30410.1 154 LIAKLRKDQELKLTCIAKKGIAKEHAKWM 182
                    ****************************6 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   5.4e-21   3.2e-17       2      68 ..      32     267 ..      31     268 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 5.4e-21
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................... RF
   RNA_pol_L   2 fllrgvdhtlgNaLRrillsevpgvaiea...................................................................... 30 
                 f l+++ ++++N+LRri+ +evp++ai+                                                                       
  CCE30410.1  32 FALSNTNLSFANSLRRIIQAEVPTIAIDLvevevnssvladefiahrlgliplnakgvgelnysrdcdceqyceqcsvtltlharctsddimkvyardl 130
                 889***************************************************999999999999999999999999999999999999999999999 PP

                 ....................................................................................xx............. RF
   RNA_pol_L  31 ....................................................................................pv............. 32 
                                                                                                     p+             
  CCE30410.1 131 vvdgrhatqvgapvisdpegmgcliaklrkdqelkltciakkgiakehakwmptsavgfeydphnklhhldmwfenntdpekewPKskyaewedppqeg 229
                 999999999999777777777777777777777777777777777777666666666666665555555555555555555555226666666666666 PP

                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  33 ..vkvntdkdklilevetdgslkPeealkeAlkiLkek 68 
                   +++ +++d++++evet g ++P+++++ ++++L+ k
  CCE30410.1 230 epFNYDAVPDRFYFEVETAGGMEPDQIVQGGIRVLQTK 267
                 666888*****************************987 PP

>> Calycin_like  Calycin-like beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.7e-06     0.028      18      64 ..      13      67 ..       2      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.7e-06
                  ---B-S-EEEEEE-SSS-EEEEEE-GG.G.........------EEEEEEEEE-SS CS
  Calycin_like 18 spsdadakvtitknedgtvnlsLknfsfg.........elplGditvdnvkvtkeg 64
                   ++++  +vti++++ ++v+++L+n +++         + ++ +i +d v+v+ ++
    CCE30410.1 13 GEPEQ-PQVTISAADSTRVDFALSNTNLSfanslrriiQAEVPTIAIDLVEVEVNS 67
                  34444.68*******************66668899999*************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2599.17
//
Query:       CCE30411.1  [L=447]
Description: probable SOF1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-31  107.6  14.7    2.8e-31  107.6  14.7    1.9  2  Sof1          Sof1-like domain
    9.5e-30  102.2  13.0    4.9e-06   27.2   0.0    6.8  7  WD40          WD domain, G-beta repeat
    2.1e-09   37.6   1.2     0.0053   17.0   0.2    4.4  4  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    5.2e-05   21.9   0.4       0.21   10.1   0.0    2.8  3  Cytochrom_D1  Cytochrome D1 heme domain
    0.00013   21.0   0.0       0.56    9.1   0.0    3.4  4  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
    0.00015   21.7   0.1      0.019   14.8   0.0    2.9  3  eIF2A         Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> Sof1  Sof1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.4   4.3e+03      39      60 ..     313     334 ..     306     336 .. 0.76
   2 !  107.6  14.7   9.4e-35   2.8e-31       1      87 []     356     442 ..     356     442 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.4
        Sof1  39 rhRhvPkaikkakkekremkea 60 
                 r R   + i+++k+++r+m ++
  CCE30411.1 313 RDRGHSRDIYHTKRMQRVMTAK 334
                 6666778899999999999765 PP

  == domain 2  score: 107.6 bits;  conditional E-value: 9.4e-35
        Sof1   1 AkAseklgvlsaReraaleyreaLkekykhmpeikrIarhRhvPkaikkakkekremkeaekrKeenrrkhskkgsvprkserkkkv 87 
                 A+Ase+ g++s+R+r+aley+e+L ++y hmpei+rI+rhRhvPk++kka ++k+++++++krKeen+r+h+kk+ ++rkser+k+v
  CCE30411.1 356 ANASESGGIKSTRQRQALEYNETLTQRYGHMPEIRRIKRHRHVPKVLKKAGEIKTQEIKSIKRKEENERRHTKKQFERRKSEREKMV 442
                 8************************************************************************************97 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1     7e-07    0.0021       8      38 .]      63      95 ..      57      95 .. 0.88
   2 !   18.0   0.0   1.3e-06    0.0039       4      38 .]     103     137 ..     101     137 .. 0.87
   3 ?   -1.8   0.1       2.4   7.2e+03      14      38 .]     158     181 ..     147     181 .. 0.65
   4 !    9.6   0.1   0.00058       1.7      13      38 .]     209     227 ..     192     227 .. 0.80
   5 !    8.8   0.0    0.0011       3.2      14      38 .]     244     269 ..     237     269 .. 0.93
   6 !   27.2   0.0   1.6e-09   4.9e-06       4      38 .]     277     312 ..     275     312 .. 0.93
   7 !   23.0   0.0   3.4e-08    0.0001       9      37 ..     316     354 ..     315     355 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 7e-07
                ESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  8 tGH.ssvtslafspdgaw.lasGsdDgtvriWd 38
                +GH ++v+s+a +p++   +asGs Dg v++Wd
  CCE30411.1 63 RGHvDGVYSIAKDPNSLErFASGSGDGVVKVWD 95
                6**999****98888888889**88*******9 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.3e-06
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l++ t+H + v s+ + +d+++l+++  D+t++++d
  CCE30411.1 103 LWHTTAHeNIVKSMEWTRDQKLLTCAA-DRTIKLFD 137
                 67889**7779***********97556.******98 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.4
                 EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvriWd 38 
                 tsl+ +++++ +a++     v i+d
  CCE30411.1 158 TSLSHHRSKNAFAAAA-SSVVCIYD 181
                 7777777777777666.77777766 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00058
                 E.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 v.tslafspdgawlasGsdDgtvriWd 38 
                 v ts+        las+s D+++ i+d
  CCE30411.1 209 VeTSV--------LASCSNDRSIVIYD 227
                 66777........9***********98 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.0011
                 EEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  14 tslafspdgaw.lasGsdDgtvriWd 38 
                 +++a+sp  a+ la++s+D++++++d
  CCE30411.1 244 NHIAWSPMEAFnLATASEDHNIYLFD 269
                 6899*******************998 PP

  == domain 6  score: 27.2 bits;  conditional E-value: 1.6e-09
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l +l+ H   v ++ +sp g  l+s+s+D+t+r+W+
  CCE30411.1 277 LNILKDHvAAVMDVEWSPTGEELVSASWDRTIRLWN 312
                 567899*888*************************8 PP

  == domain 7  score: 23.0 bits;  conditional E-value: 3.4e-08
                 SS.SSEEEEE.........EETTSSEEEEEETTSEEEEE CS
        WD40   9 GH.ssvtsla.........fspdgawlasGsdDgtvriW 37 
                 GH  ++++ +         + pd ++++sGsdDg++r+W
  CCE30411.1 316 GHsRDIYHTKrmqrvmtakWTPDARYVLSGSDDGNIRLW 354
                 6633344333444444444******************** PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00013      0.38      29      71 ..      93     142 ..      81     146 .. 0.80
   2 ?    1.9   0.0     0.091   2.7e+02      39      77 ..     199     238 ..     181     251 .. 0.75
   3 !   17.0   0.2   1.8e-06    0.0053      10      90 ..     256     336 ..     246     336 .. 0.87
   4 !    8.3   0.0   0.00097       2.9      32      69 ..     324     358 ..     314     374 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
  ANAPC4_WD40  29 vwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  vw+l        +++++++ v+s++W  d klL  a +d +++l+d ++ k
   CCE30411.1  93 VWDLtnrddslwHTTAHENIVKSMEWTRDQKLLTCA-ADRTIKLFDPYNSK 142
                  5555555555555589999*************9987.68899**9999876 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
  ANAPC4_WD40  39 sevrsLaWkpdg.klLavaysdgevrlldaesgkvvhsls 77 
                   +++++a++  + ++La   +d ++ ++d  + + v +  
   CCE30411.1 199 DTITNVAFNYVEtSVLASCSNDRSIVIYDLRTSTPVAKTV 238
                  567888888655157888888889*****99998887765 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 1.8e-06
  ANAPC4_WD40  10 iAlatedgellvfRl.ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +A a+ed ++++f + ++ r  ++  +++   v +++W+p g+ L+ a  d ++rl +   g+    +++k+ ++v++ +W+
   CCE30411.1 256 LATASEDHNIYLFDMrKMDRALNI-LKDHVAAVMDVEWSPTGEELVSASWDRTIRLWNRDRGHSRDIYHTKRMQRVMTAKWT 336
                  788999999999988577999999.6888999*****************************************999999995 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.00097
  ANAPC4_WD40  32 leedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  +   k+ ++v   +W pd +    + +dg++rl  a+ 
   CCE30411.1 324 T---KRMQRVMTAKWTPDARYVLSGSDDGNIRLWRANA 358
                  4...778899999********************98865 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0     7e-05      0.21     279     352 ..     165     235 ..     150     255 .. 0.82
   2 !    8.7   0.1   0.00018      0.53     290     337 ..     260     307 ..     247     341 .. 0.85
   3 ?   -1.1   0.0      0.17   5.2e+02     176     198 ..     333     354 ..     317     370 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7e-05
                   -SEEEEE-TT-SSHT-EEEEETTBT-EEE-HHHHHT--..EEEEEE-TTSSEEEEEEE--SSEEEEEETTTTEEEE CS
  Cytochrom_D1 279 skqlwvdaflnpdndsvaviDkktlekvltlaesaglk..vvhvEfnkdGdevwlSvwdgkdalvvyDdktlklkk 352
                   sk    +af+   +  v ++D++ ++ + ++ +++     +++v fn   + v+ S  +    +v+yD +t + ++
    CCE30411.1 165 SK----NAFAAAASSVVCIYDLERHTAAPEVLKWPTSVdtITNVAFNYVETSVLASCSNDR-SIVIYDLRTSTPVA 235
                   44....4556677899*******************987889****************9988.9*****99877554 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00018
                   SSHT-EEEEETTBT-EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--S CS
  Cytochrom_D1 290 pdndsvaviDkktlekvltlaesaglkvvhvEfnkdGdevwlSvwdgk 337
                    ++ +++++D +++  +l++ ++   +v+ vE++  G+e+  + wd+ 
    CCE30411.1 260 SEDHNIYLFDMRKMDRALNILKDHVAAVMDVEWSPTGEELVSASWDRT 307
                   56789***************9999999*************99999987 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.17
                   EEE-TTSSEEEEEEGGGTEEEEE CS
  Cytochrom_D1 176 ggldpdkRYflaaanaedkvavv 198
                   + ++pd RY l++     ++ ++
    CCE30411.1 333 AKWTPDARYVLSGSDDG-NIRLW 354
                   56777777777743322.44444 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.4   4.2e+03     203     220 ..      83     100 ..      81     109 .. 0.77
   2 !    4.3   0.0    0.0055        16      66      98 ..     199     231 ..     166     246 .. 0.84
   3 !    9.1   0.0   0.00019      0.56     152     214 ..     248     311 ..     242     320 .. 0.91
   4 ?    3.4   0.0      0.01        31     185     221 ..     325     361 ..     314     373 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.4
    Ge1_WD40 203 atasedGevkffqvyled 220
                 a  s dG+vk + +   d
  CCE30411.1  83 ASGSGDGVVKVWDLTNRD 100
                 677889999999876554 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0055
    Ge1_WD40  66 gevldlafahvsskillavdekgslfvykveev 98 
                 ++++++af +v++++l++  +  s+++y++++ 
  CCE30411.1 199 DTITNVAFNYVETSVLASCSNDRSIVIYDLRTS 231
                 47899***********************99865 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00019
    Ge1_WD40 152 gdkaeiwsvdmiaskygsgelsveeieegllkieehs.liveaafspdGtalatasedGevkff 214
                 ++ +e +++++ ++++++   +  +++++l  +++h   +++  +sp G  l  as d +++++
  CCE30411.1 248 WSPMEAFNLATASEDHNIYLFDMRKMDRALNILKDHVaAVMDVEWSPTGEELVSASWDRTIRLW 311
                 677899****************99999998888888549***********************98 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.01
    Ge1_WD40 185 eehsliveaafspdGtalatasedGevkffqvylede 221
                 ++   +++a ++pd   +   s dG +++++ + +++
  CCE30411.1 325 KRMQRVMTAKWTPDARYVLSGSDDGNIRLWRANASES 361
                 444579************************9988776 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.24   7.1e+02     124     161 ..      88     128 ..      84     135 .. 0.67
   2 !   12.8   0.0   2.7e-05      0.08      80     162 ..     218     303 ..     179     306 .. 0.78
   3 !   14.8   0.0   6.5e-06     0.019      38     132 ..     262     356 ..     255     378 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.24
                 S-EEEEEETT..TTEEEEEEE-TT--.EEEE-TTSSEEEEE CS
       eIF2A 124 aGeleiwdvk..kkkkiakaeaanat.lvewspdgryvlTa 161
                  G +++wd +  + +  +++ ++n + ++ew  d ++++ a
  CCE30411.1  88 DGVVKVWDLTnrDDSLWHTTAHENIVkSMEWTRDQKLLTCA 128
                 58899999984333445555555554278999988876654 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.7e-05
                 SSSCEEEEEECS..CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTE...EEEEEE-TT--EEEE-TTSSEEEEEE CS
       eIF2A  80 kmpakvslfdlk..vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkk...kiakaeaanatlvewspdgryvlTat 162
                   +++++++dl+    v +++ + + N i +sp + + l     +   ++ ++d+ k++   +i k + a   +vewsp+g+ ++ a+
  CCE30411.1 218 SNDRSIVIYDLRtsTPVAKTVLNFASNHIAWSPMEAFNLATASEDH--NIYLFDMRKMDralNILKDHVAAVMDVEWSPTGEELVSAS 303
                 56789******864556667788899**********9999988888..788899885541114555566667789******9998875 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 6.5e-06
                 EEEEEESSSTT--EEECCEESSS..EEEEEE-TTSS-EEEEESSSSCEEEEEECS....CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEE CS
       eIF2A  38 etelyliklkkkksevvelkkegp.ihdvaWspkskefaviyGkmpakvslfdlk....vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwd 131
                   ++yl +++k +     lk ++  + dv+Wsp+++e+  +    ++++ l++ +     ++ ++ + q+  t ++ p  ++vl +      G++ +w 
  CCE30411.1 262 DHNIYLFDMRKMDRALNILKDHVAaVMDVEWSPTGEEL--VSASWDRTIRLWNRDrghsRDIYHTKRMQRVMTAKWTPDARYVLSGS---DDGNIRLWR 355
                 57899999999888888888777669999999999996..68899999999999655535555555666778999999999999753...446666665 PP

                 T CS
       eIF2A 132 v 132
                  
  CCE30411.1 356 A 356
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1051  (0.0586201); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3194.94
//
Query:       CCE30412.1  [L=1448]
Description: related to SPT23-suppressor of TY retrotransposon [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-13   48.3   0.3    3.7e-05   24.0   0.2    2.9  2  Ank            Ankyrin repeat
      1e-12   48.0   0.2    6.4e-09   35.9   0.0    2.5  2  Ank_5          Ankyrin repeats (many copies)
    1.1e-10   42.0   0.0    2.2e-10   41.0   0.0    1.5  1  Ank_2          Ankyrin repeats (3 copies)
    2.7e-09   37.4   0.1    7.4e-09   36.0   0.1    1.7  1  Ank_4          Ankyrin repeats (many copies)
    3.4e-08   33.4   0.1    2.3e-07   30.8   0.2    2.4  2  TIG            IPT/TIG domain
    4.2e-08   32.8   0.2      0.012   16.1   0.0    2.7  2  Ank_3          Ankyrin repeat
  ------ inclusion threshold ------
       0.24   11.5   0.6         34    4.7   0.1    2.6  2  Phenol_monoox  Phenol hydroxylase conserved region


Domain annotation for each model (and alignments):
>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.2   1.4e-08   3.7e-05       2      32 .]    1003    1034 ..    1002    1034 .. 0.96
   2 !   21.4   0.0   9.1e-08   0.00023       2      30 ..    1036    1065 ..    1035    1067 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.4e-08
                  SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank    2 GnTPLHlAatngkkriiklLL.hGAnlnaldn 32  
                  G+T LHlA++ g +r + +LL +GAn++a+d+
  CCE30412.1 1003 GHTMLHLACSLGYHRFVAALLaRGANPDARDK 1034
                  99*******************99*******96 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 9.1e-08
                  SBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank    2 GnTPLHlAatngkkriiklLL.hGAnlnal 30  
                  G+TPLH+Aa n++++i++ L   GA+++++
  CCE30412.1 1036 GFTPLHMAAINDQPEIVRRLMlVGADPTIR 1065
                  9********8999****965436****987 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.8e-07   0.00072      10      52 ..     997    1039 ..     992    1039 .. 0.87
   2 !   35.9   0.0   2.5e-12   6.4e-09       1      56 []    1022    1076 ..    1022    1076 .. 0.98

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.8e-07
       Ank_5   10 nrldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52  
                  + ++  g t Lh+A++ g+ + v  Llarga+++++d+ G t+
  CCE30412.1  997 DLKRSTGHTMLHLACSLGYHRFVAALLARGANPDARDKGGFTP 1039
                  44455555********************************998 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 2.5e-12
       Ank_5    1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56  
                  Ll++g a+++++d+gg+tpLh+Aa +  +++vr+L+  gad++++  + lt+ dlA
  CCE30412.1 1022 LLARG-ANPDARDKGGFTPLHMAAINDQPEIVRRLMLVGADPTIRSLSSLTPADLA 1076
                  89999.************************************************99 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   8.6e-14   2.2e-10      23      82 ..     997    1065 ..     966    1066 .. 0.79

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 8.6e-14
       Ank_2   23 n.k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlk 82  
                  + k  +g+t Lh+A++ g++ +v +Ll+        d+ g tpLh+Aa ++++eiv+ L+  gad++++
  CCE30412.1  997 DlKrsTGHTMLHLACSLGYHRFVAALLARganpdaRDKGGFTPLHMAAINDQPEIVRRLMLVGADPTIR 1065
                  342459************99*******966566645599******************99977***9986 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.1   2.9e-12   7.4e-09       3      53 ..    1005    1054 ..    1003    1055 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 2.9e-12
       Ank_4    3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilkl 53  
                  t Lh a++ g ++ v+ Ll++ga+++a+ ++ G+t+lh+Aa + ++ei++ 
  CCE30412.1 1005 TMLHLACSLGYHRFVAALLARGANPDAR-DKGGFTPLHMAAINDQPEIVRR 1054
                  679*************************.*******************985 PP

>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.7   4.3e+03      52      75 ..     510     534 ..     504     545 .. 0.79
   2 !   30.8   0.2   8.8e-11   2.3e-07       1      73 [.     794     864 ..     794     872 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.7
         TIG  52 tlvcttPpgpsg.llnvsvlvdgaq 75 
                  ++c++  ++++ ++nv+++ ++ q
  CCE30412.1 510 RIACYCRHHSEKmGFNVIFTIKDYQ 534
                 589*******999******999933 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 8.8e-11
         TIG   1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp.sgllnvsvlvdg 73 
                 Pvi +i Pn g+  gG  +t+ G  F    + + v +g+ ++t+t+++ +++lvc++Pp p +g + v++++ g
  CCE30412.1 794 PVIHKIIPNEGPKIGGIEVTVLGASF---FQGLEVWFGECKATTTTYWGDSSLVCLLPPSPvAGAVAVTFKHHG 864
                 9*************************...********************************7779999999998 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1     2e-05     0.051       2      31 .]    1003    1031 ..    1002    1031 .. 0.94
   2 !   16.1   0.0   4.7e-06     0.012       2      30 ..    1036    1063 ..    1035    1064 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2e-05
       Ank_3    2 GetpLhlAarsgnleivkfLlenkgadvna 31  
                  G t+LhlA++ g +  v +Ll  +ga+++a
  CCE30412.1 1003 GHTMLHLACSLGYHRFVAALLA-RGANPDA 1031
                  89********************.9***985 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 4.7e-06
       Ank_3    2 GetpLhlAarsgnleivkfLlenkgadvn 30  
                  G tpLh+Aa ++ +eiv+ L    gad+ 
  CCE30412.1 1036 GFTPLHMAAINDQPEIVRRLML-VGADPT 1063
                  88********************.899985 PP

>> Phenol_monoox  Phenol hydroxylase conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.019        48      35      59 ..     120     144 ..     117     145 .. 0.93
   2 ?    4.7   0.1     0.013        34      24      46 ..     278     300 ..     276     311 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.019
  Phenol_monoox  35 mpFgalvekvlkpligahPdfarid 59 
                     +F+++ ++  + ++g++Pd+++id
     CCE30412.1 120 ARFSEFADDDHPFTFGREPDVSSID 144
                    68*********************98 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.013
  Phenol_monoox  24 capvalplppdmpFgalvekvlk 46 
                    +ap+alp p +++Fg+  ++ ++
     CCE30412.1 278 SAPHALPTPTQTQFGKTSSQSMA 300
                    69**************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.44
# Mc/sec: 9785.96
//
Query:       CCE30413.1  [L=610]
Description: related to Na+/H+-exchanging protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-48  164.8  13.5    3.3e-48  164.4  13.5    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.4  13.5   1.9e-52   3.3e-48       3     376 ..      22     457 ..      20     458 .. 0.89

  Alignments for each domain:
  == domain 1  score: 164.4 bits;  conditional E-value: 1.9e-52
                     HHHHHHHHHHH..H.HHHTTSXHHHHHHHHHHHHTTTTTS........................HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCT CS
  Na_H_Exchanger   3 llillallvgl..l.arrlklpeivgliiaGlllGpsglglieps...................eedlevlselglilllFlaGleldlrelrkn 75 
                     l+++++l++++  l  ++++++e ++ +++G+  Gp+g  +i+p                    + ++  +s+l+l ++l laG+ l+ ++l+k 
      CCE30413.1  22 LGGFVSLFGLVsyLvKEKYYMSEALISLLVGVATGPHGADWIRPRsyaacardglsdeqcaerlMAVTLNFSRLVLGVQLVLAGVQLPSKYLWKQ 116
                     556666666667755******************************************************************************** PP

                     HHHHHHHHHHHHHHHHHHHHHHHH.H.HTXTTCHHHHHHHHHHHTSSXHHHHHHHC....CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHT CS
  Na_H_Exchanger  76 lksilllallgvlitvvliGlllyll.lilgiplleallfgailsatdpvvvlailk...eegrvperlgtlllgesvlnDavavvllavllala 166
                     l+++lll  +g++ ++++++ll++ + ++++ ++l+al++ga++++tdpv+ + i+k     + +p++l +l+++es+ nD+++ ++l+++l l+
      CCE30413.1 117 LRPVLLLVGPGMACMWLATSLLVW-GlVGGNTSFLHALAVGACVTPTDPVLSAVIVKgqfADHNIPKDLQNLIVAESGTNDGLGYPFLFLALYLI 210
                     ******************999999.54779***************************99977888****************************** PP

                     X...XXXXTSSSTS.........XHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS....CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHH CS
  Na_H_Exchanger 167 k...eeaggetsll.........lllliflvvavgglllglvigwllrlitrft....dddrelevllvlllallaallaellgvsgilgaflaG 245
                     k   ++ gge++ +         +++ + ++ ++++++ g+v+gwl++ +++++      dre++++++++lal++ ++  ++g +++l++f+aG
      CCE30413.1 211 KfvaGQPGGENDQGggageamglWFAYTWAYTVLLSIVYGAVVGWLAKELLHWAeerrYVDRESFLVFAIALALFVLGTCGMIGTDDVLACFVAG 305
                     **996666666666666777777*******************************9988889********************************** PP

                     HHHH.HHHHHTTHHHH.HHHHHHHHHHHHHHHHHHHHSXHHHHHX..XHHHHHHHHHHHHHHHTHHHHHHHHHTTTX.SSXH.HHHHHCCCCSS. CS
  Na_H_Exchanger 246 lvls.eyefsnklsek.lesfreglfnplfFvlvGlsldlkvlnn..hlsvlilvllilvaillgrilavflllrll.glsl.realiigfgglq 334
                      +++ + +f+ ++  + l ++ + l+n+ +F+  G+ l++  + +   + v +lv l l+++ll+r+++vf + +++ ++s+ r+a+++gf g  
      CCE30413.1 306 NAFTwDDWFRLQTKDDsLQPTVDMLLNVSIFLWYGAYLPWDQFSHnaVVPVRRLVPLGLLVMLLRRLPWVFGMHKWIpQISHaRQAIFVGFFGP- 399
                     ***********999999**********************88886688788889999*********************8566659999***7777. PP

                     BHHHHHHHHHHHHHHXHHHH.................TT.SSTTTCSTSXHHHHHHHHHH CS
  Na_H_Exchanger 335 rgavalalaalgpalgllar.................el.yallivvvlftvlvqGlslk 376
                     +  v++++ ++++++ ++++                 e+   ++ + ++++++v+Gls++
      CCE30413.1 400 I-GVSAIFYLFITLE-FIKAhlsdengvpredvrdlaETtTIIVWFLAVCSIVVHGLSIP 457
                     3.4555555555555.33333444677777799988755366666778999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4162.84
//
Query:       CCE30414.1  [L=312]
Description: related to ribonuclease H1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-37  128.0   0.1    4.7e-37  127.3   0.1    1.3  1  RNase_H    RNase H
    3.5e-20   72.0   4.4    1.3e-15   57.3   2.2    2.4  2  Cauli_VI   Caulimovirus viroplasmin
     0.0025   17.2   0.8     0.0025   17.2   0.8    1.5  2  L-fibroin  Fibroin light chain (L-fibroin)
  ------ inclusion threshold ------
      0.092   12.6   0.0       0.33   10.8   0.0    2.0  1  HTH_23     Homeodomain-like domain


Domain annotation for each model (and alignments):
>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   0.1   1.1e-40   4.7e-37       4     142 ..     164     309 ..     161     310 .. 0.87

  Alignments for each domain:
  == domain 1  score: 127.3 bits;  conditional E-value: 1.1e-40
                 EEEEEEEEEECTTTCE.EEEEEECTT....EEEEEEEC.CCCHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBH CS
     RNase_H   4 vvvYtDGsclgnpgeg.gagavlykeg..arnisaple.eaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpv 98 
                 + +YtDGs+l n ++g +ag+++y+++  arn+s++l  e+qtn+raEL+A+  aL+ +  +++v+i++DS+Y +k +t+w  +wk+++wkt++ + +v
  CCE30414.1 164 LQIYTDGSSLANGRAGaRAGVGVYFGDadARNVSERLVgEPQTNQRAELMAMLRALEIAPLKQTVQIISDSQYSIKCLTEWAIGWKRKGWKTATGE-NV 261
                 579*********99999****8877765677******99******************77899****************************888777.7* PP

                 TT....HHHHHHHHHCHC.SSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H  99 kn....kdlaellkelak.kkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142
                 kn    + +  +++e ++ + + +++wvkgHa++ +gN +aDrlA+++a
  CCE30414.1 262 KNqdiiRAILDKMDERTRaNSTTYFHWVKGHASD-RGNMAADRLAVRGA 309
                 **544444555666666656779***********.8**********997 PP

>> Cauli_VI  Caulimovirus viroplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.9e-06     0.031      21      44 .]      15      38 ..       9      38 .. 0.86
   2 !   57.3   2.2     3e-19   1.3e-15       2      44 .]      54      96 ..      53      96 .. 0.97

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.9e-06
    Cauli_VI 21 qkqvkgfpgakyKsFktraeAeaf 44
                 +  k ++ a+ KsF++r++Aeaf
  CCE30414.1 15 LADMKDCSRATVKSFTSRSDAEAF 38
                56678999***************9 PP

  == domain 2  score: 57.3 bits;  conditional E-value: 3e-19
    Cauli_VI  2 yYAVakGrepgiYttWdecqkqvkgfpgakyKsFktraeAeaf 44
                +YAVa+G+ +giYt+W+e+ +++kg++g+kyK+F +r++A a+
  CCE30414.1 54 FYAVAVGNPTGIYTDWSEAAAAIKGVKGPKYKKFGSRKDAAAY 96
                9***************************************987 PP

>> L-fibroin  Fibroin light chain (L-fibroin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.67     3e+03      57      96 ..      28      69 ..      18      96 .. 0.61
   2 !   17.2   0.8   5.5e-07    0.0025      49     130 ..     122     204 ..     105     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.67
   L-fibroin 57 dyasqasavaqtagiiahlsagipgd..acaaanvinsytdg 96
                 ++s++ a a +ag     s+g p    a+a  n    ytd 
  CCE30414.1 28 SFTSRSDAEAFAAGEKIPASSGDPERfyAVAVGNPTGIYTDW 69
                566666777777777666777777642255555666667764 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 5.5e-07
   L-fibroin  49 lkdmasqgdyasqasavaqtagiiahlsagi.pgdacaaanvinsytdgvrsgn.fagfrqslgpffghvgqnlnlinqlvinp 130
                 lk ++s     ++ +a a+ta   a  +a    g ac a  v++ ytdg    n  ag r  +g +fg      n+ ++lv +p
  CCE30414.1 122 LKSVTSGAAPPARKTATARTAAAAAAAAARAdSGVACPAEGVLQIYTDGSSLANgRAGARAGVGVYFGDAD-ARNVSERLVGEP 204
                 66677777777788899999998887777542799**************98777369***********864.456667776665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.4e-05      0.33      10      35 ..       2      27 ..       1      39 [. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.4e-05
      HTH_23 10 illllaeGlsvreIAreLgvsrrTvy 35
                ++++ ++++s r+ A++ ++sr Tv 
  CCE30414.1  2 AMHATLVRWSLRALADMKDCSRATVK 27
                5678888*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2444.67
//
Query:       CCE30415.1  [L=151]
Description: uncharacterized protein CPUR_04263 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0002   21.7   1.8    0.00025   21.5   1.8    1.2  1  DUF4510   Domain of unknown function (DUF4510)


Domain annotation for each model (and alignments):
>> DUF4510  Domain of unknown function (DUF4510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   1.8   1.4e-08   0.00025      12      82 ..       4      72 ..       2     109 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.4e-08
     DUF4510 12 PripesGagelelvareLqalqeeLqeaaeaRRaawearvgg.lgqGpewsaarralqeaVaqeLaaLqlsw 82
                P  pe   +e+elv reLq+l++++q    + R+ ++a+v + ++ G+     +++ qea ++   aLq+ +
  CCE30415.1  4 PMQPEVVLSEAELVFRELQTLRQQVQVFEAQQRQTQQANVAAqQELGT---LLQQKQQEALQRSADALQQHF 72
                6677778899****************9988899999998866034454...457777899999999999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2091  (0.116627); expected 358.6 (0.02)
Passed bias filter:                      775  (0.0432261); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1111.72
//
Query:       CCE30416.1  [L=274]
Description: uncharacterized protein CPUR_04264 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2121.28
//
Query:       CCE30417.1  [L=410]
Description: uncharacterized protein CPUR_04265 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-23   83.3   0.0    2.2e-23   82.5   0.0    1.3  1  RT_RNaseH    RNase H-like domain found in reverse transcripta
    1.5e-11   44.2   0.0    2.9e-11   43.3   0.0    1.4  1  RT_RNaseH_2  RNase H-like domain found in reverse transcripta
    1.8e-06   27.6   0.1      3e-06   26.9   0.1    1.3  1  RVT_1        Reverse transcriptase (RNA-dependent DNA polymer


Domain annotation for each model (and alignments):
>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.0   3.7e-27   2.2e-23      17     103 ..     128     216 ..     125     218 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 3.7e-27
                 EEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--.EEEE-SS--TTTTT----.---HHHHHHHC- CS
   RT_RNaseH  17 igavLsqreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqg.rk.ftvitDhknlkyllskkslngrlarWaleLs 103
                 +g++Lsq +++g  +p+a+ S +l + ++ny++++kell+i+ +lk +   l++ ++ ft++tDhknl+y++ ++  ++r+arWa++L+
  CCE30417.1 128 LGGCLSQYDARGILHPVAYHSARLMAPQKNYTIHDKELLSIISCLKAWSAELRSvSQpFTIFTDHKNLEYFTAPRIMSERQARWAETLA 216
                 79****************************************************9888******************99*********97 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   4.9e-15   2.9e-11      42     100 .]     128     188 ..     126     188 .. 0.93

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 4.9e-15
  RT_RNaseH_2  42 igavLsqedddgkerpiafaSrklskaernysttekellAivwalkkfrhyllg..rkftv 100
                  +g++Lsq d  g ++p+a+ S +l + ++ny++++kell+i+ +lk ++  l +  ++ft+
   CCE30417.1 128 LGGCLSQYDARGILHPVAYHSARLMAPQKNYTIHDKELLSIISCLKAWSAELRSvsQPFTI 188
                  79********888************************************999887777775 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   5.1e-10     3e-06     167     222 .]      14      65 ..      13      65 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 5.1e-10
                 TTEEEEEESS.HHHHHHHHHHHHHHHHHTT--BEGGG-EEE.....ESSEEETTEEE CS
       RVT_1 167 aDDililsks.keelqelleaveewlkesglkinpeKtklvlftvkseevkyLGvtl 222
                 +DD+li+s++ k+++ +  ++v ++l+ +gl +  +K+ +       +evkyLG+++
  CCE30417.1  14 VDDLLIYSSDsKDDHVRKTREVLRRLQAAGLYLDIKKCNFG-----VTEVKYLGFIV 65 
                 6*******997888***************************.....8*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3276.92
//
Query:       CCE30418.1  [L=155]
Description: ribonuclease T1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00023   21.8   0.0    0.00037   21.2   0.0    1.3  1  Ribonuclease  ribonuclease


Domain annotation for each model (and alignments):
>> Ribonuclease  ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     2e-08   0.00037       5      76 ..      39     105 ..      36     129 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2e-08
  Ribonuclease   5 artklqaieaGskagsgpfryksigGdvfgNregl.LPkkksgyYrEydvntpgekyr....gadRivtg.dgldske 76 
                   a + + ++++G+  g + +++      v++N+e++ L    +g+++E+++ ++g++y     g+dR+++  d    ++
    CCE30418.1  39 ANASCSRVKKGTAIGANSYPH------VYRNSEKIdLK-GLRGPFYEWPILSNGRIYDggnpGPDRVIITkD----CT 105
                   678899999997776655555......88******776.559**************9888999******934....33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1127.45
//
Query:       CCE30419.1  [L=107]
Description: uncharacterized protein CPUR_04267 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 792.93
//
Query:       CCE30420.1  [L=608]
Description: uncharacterized protein CPUR_04268 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-05   24.3  11.4    4.8e-05   23.4  11.4    1.4  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.083   12.7  21.4       0.17   11.6  21.4    1.5  1  AAA_11          AAA domain
       0.19    8.8  29.2       0.26    8.3  29.2    1.1  1  GREB1           Gene regulated by oestrogen in breast cancer
       0.23    9.7  47.1       0.33    9.2  47.1    1.2  1  PAT1            Topoisomerase II-associated protein PAT1
        1.3    7.8  27.3        2.2    7.0  27.3    1.4  1  Presenilin      Presenilin
        3.5    6.1  24.5        5.2    5.5  23.8    1.6  2  Macoilin        Macoilin family
          6    5.8  13.8        9.3    5.2  13.8    1.3  1  Membralin       Tumour-associated protein
        6.1    6.1  36.8        9.4    5.5  36.8    1.2  1  DUF3523         Domain of unknown function (DUF3523)
        9.1    5.0  22.6         16    4.2  22.6    1.4  1  ALMT            Aluminium activated malate transporter


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4  11.4   2.4e-08   4.8e-05       1      37 [.      51      87 ..      51      90 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.4e-08
                SS-HHHHHCT---ST.SSSS-HHHHHCTHHHCCCCTCC CS
     Zn_clus  1 haCdnCrkkKvKCda.kkPaCsnCkklnleCtfysess 37
                +aCd+C+++K  C + + +aC +C++l++eC+  s s 
  CCE30420.1 51 KACDRCHSQKLSCKRvGEEACERCIRLQTECK-SSPSL 87
                59**************9999***********9.66665 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  21.4   8.7e-05      0.17      78     190 ..      51     193 ..      29     200 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.7e-05
      AAA_11  78 lldsegekykpkivRvgnee.....eriseavksvsleekvekrlekee...........................kaqlakeiskeleklakelrafe 144
                    +++ ++k+++ Rvg e+     + ++e  +s sl++k ++r ++ee                           +        +++++++++ ++++
  CCE30420.1  51 KACDRCHSQKLSCKRVGEEAcerciRLQTECKSSPSLRYKKQQRHQQEEqqqshlqlfhhhpqhhstqhqhqqhplQ--------QQQQQQQQQQQQQH 141
                 44456788899999999999999974445555555666666666666656677799999999998777555554422........22222222222222 PP

      AAA_11 145 eeeek......eklkkskekskskleqerrklkkerkelskeleeaeeslee 190
                 + +++      +++++ ++++ ++++q++++l+++r+  +++ +++++ +++
  CCE30420.1 142 QHQHHqqhqhqHQHQQHQHQQHQHQHQQEQQLQQQRHHSQSQTQSQTRPVQN 193
                 2111122222255666666666667777777777776666666666666655 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  29.2   0.00013      0.26    1130    1289 ..      69     243 ..      35     249 .. 0.39

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00013
       GREB1 1130 svaadaaeesskts......pvkvekseskdavesglsskasakselse.asaaaasaseeakspkasvtseeeeseeskekekeslsketesqlsl 1219
                  + ++ +   +++ +       +k ++++++++++s l+   ++ ++ s+ +++++++ ++++++++++ +++++++++++++++++ + ++++q ++
  CCE30420.1   69 EACERCIRLQTECKsspslrYKKQQRHQQEEQQQSHLQLFHHHPQHHSTqHQHQQHPLQQQQQQQQQQQQQQHQHQHHQQHQHQHQHQ-QHQHQQHQ 164 
                  3333332222222111111111111211122222222111111111111122222222222222222222222222222222222222.22222222 PP

       GREB1 1220 easeqkealdakasskssssssssssassP........ssscslakavkrPpivllskavydiltssdssglp.ksssl 1289
                  ++ +q+++l+++++ ++s+++s +  +++P         + +   + +++ ++++l + +  il++ + ++l+ +++sl
  CCE30420.1  165 HQHQQEQQLQQQRHHSQSQTQSQTRPVQNPvvesqppiGRRSPKRRKTSNERSLVLEQQALPILAPAEQTRLNdSCVSL 243 
                  3333333333333333333333333334444544445655555666667788888999999999988877775256666 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  47.1   0.00017      0.33     204     334 ..      87     209 ..      50     245 .. 0.41

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00017
        PAT1 204 mraqakkkaaqaaaaaaas....qqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqskqakpaepsasseaq 298
                 +r +++++++q+++++++     ++P++++++++++++  ++++q+qq+++++++q+q+++q+++++q+++++++ +++q++q++q +++         
  CCE30420.1  87 LRYKKQQRHQQEEQQQSHLqlfhHHPQHHSTQHQHQQHPLQQQQQQQQQQQQQQHQHQHHQQHQHQHQHQQHQHQQHQHQHQQEQQLQQQ--------- 176
                 444444444444333333222234444333333222222222222222222222222222222222222222222222222222222221......... PP

        PAT1 299 eakqqappakvqptqilqnpnrlaarlelsqkeqaa 334
                   ++++++++++ t+ +qnp +  ++ ++ +++ ++
  CCE30420.1 177 --RHHSQSQTQSQTRPVQNPVVE-SQPPIGRRSPKR 209
                 ..222222223334445566655.222222222222 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  27.3    0.0011       2.2     217     299 ..      90     176 ..      73     242 .. 0.41

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0011
  Presenilin 217 satvvvlaaeek.......kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseess 299
                 + +   +++e++       +   ++++++++++++++  +++++++++++++++++ q++++++++++++++++++++++++++++ +++
  CCE30420.1  90 KKQQRHQQEEQQqshlqlfH--HHPQHHSTQHQHQQHPLQQQQQQQQQQQQQQHQH-QHHQQHQHQHQHQQHQHQQHQHQHQQEQQLQQQ 176
                 33333333333222111110..1111111111111111111111111111111111.111111111111111111111111111111111 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  23.8    0.0026       5.2     238     353 ..      95     214 ..      55     243 .. 0.47
   2 ?   -3.3   0.0       1.2   2.5e+03     621     643 ..     386     408 ..     384     420 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0026
    Macoilin 238 nhslnkkdsslklpeleyrekkksakssrsdskkkhehn......esvdsklqekeymenkskskrlsksessgsesellveesvkskssssssssnkn 330
                 +++ ++++s l+l + + ++++++++++++  +++++++      +++++++q++++++++ ++++ ++++++++e++l+++ + ++  s ++s++ + 
  CCE30420.1  95 HQQEEQQQSHLQLFHHHPQHHSTQHQHQQHPLQQQQQQQqqqqqqQHQHQHHQQHQHQHQHQQHQHQQHQHQHQQEQQLQQQRHHSQ--SQTQSQTRPV 191
                 222222233333333333333222222222222222222112222333333344444334433333333333333333333332222..2233333344 PP

    Macoilin 331 skkasagsagssnssskkhsess 353
                 ++    ++  ++  s+k+ ++s+
  CCE30420.1 192 QNPVVESQPPIGRRSPKRRKTSN 214
                 44444444555555665555554 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.2
    Macoilin 621 eikdLkakiaevlavlPstselt 643
                 +++++++++ ++ +vlP+ ++++
  CCE30420.1 386 QLNEINSRLLDLASVLPQLATAR 408
                 67899************854444 PP

>> Membralin  Tumour-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  13.8    0.0047       9.3      85     143 ..     120     178 ..      63     246 .. 0.49

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0047
   Membralin  85 lkksevllessekeeesekkisisenkkvllkeasvtlleesvlevsleaeeeekesss 143
                 +++++ l+++++++++++++ +++++++ ++++ +++++++++ ++++++e++ +++++
  CCE30420.1 120 QHQQHPLQQQQQQQQQQQQQQHQHQHHQQHQHQHQHQQHQHQQHQHQHQQEQQLQQQRH 178
                 11111122222222111111111111111111111111111111111111111111111 PP

>> DUF3523  Domain of unknown function (DUF3523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  36.8    0.0047       9.4      27     145 ..      69     202 ..      52     234 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0047
     DUF3523  27 eaLERaAkalrelesskhakkalelikkqEetrqaElqakkkeyeaeleqleierkrveaeerrktlqee.tkqkqqraqyedeLarkryqdeleaqrk 124
                 ea ER  ++  e  ss+  +   +  ++qEe +q+ lq   ++ + + +q++ +++  +++++++  q++ ++q+q+++q++ + + +++q++++++++
  CCE30420.1  69 EACERCIRLQTECKSSPSLRYKKQQRHQQEEQQQSHLQLFHHHPQHHSTQHQHQQHPLQQQQQQQQQQQQqQHQHQHHQQHQHQHQHQQHQHQQHQHQH 167
                 7889999999999999999888889999999999999999999999999999999988877776665555055667788999999999*********** PP

     DUF3523 125 rneellkkqeesvlrqEair..............i 145
                 ++e++l++q   ++ q + +              i
  CCE30420.1 168 QQEQQLQQQRHHSQSQTQSQtrpvqnpvvesqppI 202
                 ******99977666655544337666655555551 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  22.6     0.008        16     309     423 ..      86     180 ..      45     226 .. 0.44

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.008
        ALMT 309 vlrelaesvkkmkklskveellkevkvaaeeLqskldskskLlvnsekweaakkkekaeeveekkeeekeseskkeeaeaveeaeseseksllkeskrs 407
                  lr ++++ +++++++                    +s+ +L+ + ++++ ++++++++  ++++++++++++++++++++++++++++++++++++++
  CCE30420.1  86 SLRYKKQQRHQQEEQQ--------------------QSHLQLFHHHPQHHSTQHQHQQHPLQQQQQQQQQQQQQQHQHQHHQQHQHQHQHQQHQHQQHQ 164
                 2222222222222222....................223333333333333333333333333333333333333333333333333333333322222 PP

        ALMT 408 lklskkesapaeesle 423
                  + +++++ +++++  
  CCE30420.1 165 HQHQQEQQLQQQRHHS 180
                 2222222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4833  (0.269563); expected 358.6 (0.02)
Passed bias filter:                      961  (0.0536003); expected 358.6 (0.02)
Passed Vit filter:                       520  (0.0290033); expected 17.9 (0.001)
Passed Fwd filter:                       100  (0.00557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.65u 0.39s 00:00:02.04 Elapsed: 00:00:00.55
# Mc/sec: 3302.38
//
Query:       CCE30421.1  [L=229]
Description: probable SOD2-superoxide dismutase (Mn) precursor, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-37  125.5   0.1    1.5e-36  124.6   0.1    1.4  1  Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal do
    1.7e-30  105.3   2.0    3.1e-30  104.5   2.0    1.4  1  Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin


Domain annotation for each model (and alignments):
>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.1   1.7e-40   1.5e-36       1     102 []     125     226 ..     125     226 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.6 bits;  conditional E-value: 1.7e-40
                 --HHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETT.TEEEEEEEETTTBGGGGTTCEEEEEE-SGGGTHHHHTT-HHHHHHHHGGGBBHHH CS
    Sod_Fe_C   1 psgelaeaieedfgslekfkkefkaaalavfgsGwawLvldkk.kkLeivttknqdnplvkeakplLalDvwehAYyldyqnkradYieafwnvvnWke 98 
                 p+g+l +ai++dfgs++++kk+ ++a ++++gsGwawLv+dk+ ++L +vt +nqd p++ + +plL++D wehAYyl+yqn++ +Y++a+w+v+nW +
  CCE30421.1 125 PEGKLLAAIKKDFGSFDTLKKQTNTALAGIQGSGWAWLVKDKTsGTLGVVTRANQD-PVMGNLEPLLGIDAWEHAYYLQYQNRKVEYFSAIWDVINWGT 222
                 89**************************************998679**********.7998999*********************************** PP

                 HHHH CS
    Sod_Fe_C  99 veer 102
                 v++r
  CCE30421.1 223 VSKR 226
                 *986 PP

>> Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   2.0   3.4e-34   3.1e-30       3      82 .]      36     115 ..      34     115 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 3.4e-34
                 -----SS-TTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHHCHHHHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTB- CS
    Sod_Fe_N   3 eLpeLpYaydaLePhisketlelHhdkHhktYvnnlNkalekleeakkkleelvlkklekalrnnagghvnHslfwknls 82 
                 +Lp+LpY+y+aLeP+is +++elHh kHh+tYvn +N+a+e l  a++k ++ +++++   l++++ggh+nHslfw+nl+
  CCE30421.1  36 TLPDLPYDYAALEPQISGQIMELHHAKHHQTYVNSYNAAIEALGDAQAKNDTKAAAAQAPLLNFHGGGHINHSLFWENLA 115
                 79****************************************************9999********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1610.12
//
Query:       CCE30422.1  [L=181]
Description: related to PSF3-part of GINS, replication multiprotein complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-18   66.2   0.0    5.5e-18   65.4   0.0    1.4  2  Sld5      GINS complex protein


Domain annotation for each model (and alignments):
>> Sld5  GINS complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.89   1.6e+04      30      53 ..       6      22 ..       5      30 .. 0.71
   2 !   65.4   0.0   3.1e-22   5.5e-18       2     109 .]      43     158 ..      42     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.89
                HHHCCCHHTTSSSSTTTTTTHHHH CS
        Sld5 30 leailedetkssdlpslpphflel 53
                ++ail+d +k+       p+++el
  CCE30422.1  6 VDAILTDAEKV-------PCQFEL 22
                57888888888.......556655 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 3.1e-22
                 EEEHHHHHHHH.........HTTSCCCHHCHHHCHHHHHHCCCHHTTSSSSTTTTTTHHHHHHHHHHHHT.HCHHHHHHHHHHHHHHHHHHHTHCHHHH CS
        Sld5   2 eLPlWlaelLk.........rqrrveieppewlspesleailedetkssdlpslpphflelavkllelardldelkrllrdllevRlakirkfaenled 91 
                 +LPlWlae+L+          ++  ++ +p++ls+++++a+++d++++  l++++ h + ++v++l+l+ + +el+ +lr ++ vR+ ++  +a++ +d
  CCE30422.1  43 SLPLWLAEMLAlastggsddARPPLTLSLPPCLSEQVVNALKADPRAV-ALRDQSAHLYGIGVRMLDLFDE-RELSTVLRRTFVVRAGELGLHARKADD 139
                 69******************99**************************.********************99.*************************** PP

                 HH.HTS-TCCHCCS-HHHH CS
        Sld5  92 aa.gggggellsglseeEk 109
                  a +g+g e+l+gl+e+E+
  CCE30422.1 140 GAgSGQGAEFLRGLDEWER 158
                 **9999************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1298.53
//
Query:       CCE30423.1  [L=160]
Description: uncharacterized protein CPUR_04271 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1253.39
//
Query:       CCE30424.1  [L=255]
Description: uncharacterized protein CPUR_04272 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2074.50
//
Query:       CCE30425.1  [L=504]
Description: probable Cysteine desulfurase, mitochondrial precursor (tRNA splicing protein SPL1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-92  308.0   0.0      1e-91  307.7   0.0    1.1  1  Aminotran_5      Aminotransferase class-V
    4.4e-06   26.2   0.0    6.3e-06   25.7   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00014   21.3   0.1    0.00061   19.2   0.1    1.9  2  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0036   15.9   0.0     0.0053   15.3   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.021   13.6   0.0      0.034   12.9   0.0    1.2  1  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.7   0.0   2.8e-95     1e-91       1     371 []     105     469 ..     105     469 .. 0.98

  Alignments for each domain:
  == domain 1  score: 307.7 bits;  conditional E-value: 2.8e-95
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC...-TTTSEEEEET CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslars...lkpgdeivvte 95 
                  iyld++ tt++ ++Vlda+  +y   ++n+h+ +h +g+e  kaveeare++a li+a+  +eiiftsG+te++n+ ++++ar      ++++i++t+
   CCE30425.1 105 IYLDMQSTTPVDPRVLDAMIPFYVGVYGNPHSRTHAYGWESEKAVEEAREHIASLIGADA-KEIIFTSGATESNNMSIKGVARFfgrSGKKNHIITTQ 201
                  8**********************************************************6.*********************99888999******** PP

                  TSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTES CS
  Aminotran_5  96 aehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvD 193
                  +eh++ l  +++l+ + g++++++p++++g++++++le++++++t+lv+i+ v+n++G+iqp+eeigkl+++k++++++Daaqavg+ip+dv+++++D
   CCE30425.1 202 TEHKCVLDSCRHLQ-DDGFEITYLPVQKNGLVNMSDLEAAMKPETALVSIMTVNNEIGVIQPIEEIGKLCRQKKIFFHTDAAQAVGKIPLDVNAMNID 298
                  *************7.88********************************************************************************* PP

                  EEEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_5 194 flafsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerl 291
                  ++++s+hK++gP+GiG+ yvr++  ++l p+ +gg+       +e++       +++GT   + ++g+g+a ++  + +++   k+ k l+++ll++l
   CCE30425.1 299 LMSISSHKIYGPKGIGACYVRRRPRVRLDPIITGGG-------QERG-------LRSGTLAPPLVVGFGEACRIA-KEEMQYDSKRIKYLSDRLLKGL 381
                  ************************************.......9999.......9******************99.8999999*************** PP

                  CTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTT....HHHHHHTT.S.......-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 292 kslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhca....qplmkrlale.......gtvRaSlyiynteeevdrl 371
                   s++++  +g d++   +++v+++f++v+ e + ++L++  Ia++sG++c+    +p+++++al        +++R+++++ +te+e+d++
   CCE30425.1 382 LSMEHTSQNG-DEKAFYPGCVNVSFAYVEGESLLMALKD--IALSSGSACTsaslEPSYVLRALGnsdesahSSIRFGIGRFTTEAEIDYV 469
                  ********99.899*******************999998..**********9999999999999999*********************975 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.8e-09   6.3e-06      30     170 ..     145     283 ..      81     377 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.8e-09
                      --HHHHHHHHHHHHHTT-S..EEEEES-HHHHHHHHH....HHH--..TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHH CS
  Beta_elim_lyase  30 edktvnrLedavaelfgke..aalfvpqGtaAnsill....killq..rgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekle 115
                       +k v++  +++a l+g++   ++f+   t +n++++    + + +  +++ +i t++ h +      + +  g + + l+ +++G +++ +le
       CCE30425.1 145 SEKAVEEAREHIASLIGADakEIIFTSGATESNNMSIkgvaRFFGRsgKKNHIITTQTEHKCVLDSCRHLQDDGFEITYLPVQKNGLVNMSDLE 238
                      34566777777777888773257899999********555422222224567888899999888888888999999999999999********* PP

                      HHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETT CS
  Beta_elim_lyase 116 aaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgAR 170
                      aa+k+      +++l+s+ + nn     +  ++ ++e+ +++++++i +h D+A 
       CCE30425.1 239 AAMKP------ETALVSIMTVNNE----IGVIQPIEEIGKLCRQKKIFFHTDAAQ 283
                      ****9......4789988777774....55677788999*************995 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   1.7e-07   0.00061      23     151 ..     147     287 ..     138     306 .. 0.77
   2 ?   -0.8   0.0       0.2   7.2e+02     315     360 ..     434     473 ..     361     474 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.7e-07
                      HHHHHHHHHHHHHHT..-SEEEEESSHHHHHHHHHHH....TTTT.TT-EEEEESSS-THHHHHHHHT...T-EEEEE-B-TTTSSB-GGGCGG CS
  DegT_DnrJ_EryC1  23 peveeFEkafaaylg..vkhaiavssGtaAlhlaLra....lgvg.pgdeVIvpsltFvatanavlel...gakpvfvDvdpdtynidpaaiea 106
                      + vee  + +a  +g  +k  i +s +t+++ ++++     +g + +++ +I++++       + ++l   g +  ++ v+ +   ++ +++ea
       CCE30425.1 147 KAVEEAREHIASLIGadAKEIIFTSGATESNNMSIKGvarfFGRSgKKNHIITTQTEHKCVLDSCRHLqddGFEITYLPVQ-KNGLVNMSDLEA 239
                      556666667777777656777777888888888887655553332488888888888877766666653336777777777.67889******* PP

                      G--TTE..EEEEEB-G.GGB---HHHHHHHHHHCT-EEEEE-TT-TT- CS
  DegT_DnrJ_EryC1 107 aitert..kaIlpVhl.yGqvadmdalkaiaakhglkvieDaAhAlGa 151
                      a  ++t    I++V+   G +  ++++ ++++++++ +  DaA+A+G 
       CCE30425.1 240 AMKPETalVSIMTVNNeIGVIQPIEEIGKLCRQKKIFFHTDAAQAVGK 287
                      ******777899997538****************************95 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.2
                      SCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHHHH CS
  DegT_DnrJ_EryC1 315 qpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVveal 360
                       p y  r      +l n+++ a++ + + +    te+++d+V +a+
       CCE30425.1 434 EPSYVLR------ALGNSDESAHSSIRFGIGRFTTEAEIDYVLKAV 473
                      4444444......478999999999999999999999999999988 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-06    0.0053      46     179 ..     141     286 ..     120     308 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-06
                      BTTT--HHHHHHHHHHHHHHT-.SEEEEESSHHHHHHHH.HHTTS....-TT..EEEEEESTSSHHHHHHHHHTHHH.TTCEEEEEST...TSH CS
  Cys_Met_Meta_PP  46 YsRsgnptrsvleeriaaLegg.eaalavssGmaAiaaa.ilall....kaG..deivvsddlYggtqrllkkvlkk.lgievkfvdt...sdl 127
                      Y+      ++   e+ia L g+ ++ ++++sG + ++++ i  ++    ++G  ++i+++++ +++  + ++++    ++i++  v++    ++
       CCE30425.1 141 YGWESEKAVEEAREHIASLIGAdAKEIIFTSGATESNNMsIKGVArffgRSGkkNHIITTQTEHKCVLDSCRHLQDDgFEITYLPVQKnglVNM 234
                      55555556666778999999996678999999987655413333211114452246***99999999999998877767777777766444689 PP

                      HHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHT CS
  Cys_Met_Meta_PP 128 eelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfasp 179
                      ++le+a+k++t lv + t+ n    +  ie+i kl++++++    D++ a +
       CCE30425.1 235 SDLEAAMKPETALVSIMTVNNEIGVIQPIEEIGKLCRQKKIFFHTDAAQAVG 286
                      9****************************************99999876655 PP

>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.4e-06     0.034     149     238 ..     198     284 ..     188     291 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.4e-06
                    EEETTS-HHHHHHHHHH...T-EEEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHHCT-EEEEE-TTG CS
  Pyridoxal_deC 149 ytsdqahssvekaalvl...gvklrvipldengklrgaalekaieedkekGlipffvvatlGttvlgaFddlkelgdicekydlwlHvDAAya 238
                     t +  h +v    + l   g+++ ++p+++ng + +++le+a++ + +    ++ v+  +G+        ++e+g++c++ ++  H DAA a
     CCE30425.1 198 ITTQTEHKCVLDSCRHLqddGFEITYLPVQKNGLVNMSDLEAAMKPETAL-VSIMTVNNEIGVI-----QPIEEIGKLCRQKKIFFHTDAAQA 284
                    5666667777433333312258899********9*********9999988.5556999998875.....68********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3679.85
//
Query:       CCE30426.1  [L=433]
Description: probable RVS167 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-68  230.2   7.3    3.4e-68  229.9   7.3    1.1  1  BAR            BAR domain
    4.7e-15   54.9   0.1      1e-14   53.8   0.1    1.6  1  SH3_1          SH3 domain
      1e-12   47.7   0.1    1.8e-12   46.9   0.1    1.4  1  SH3_9          Variant SH3 domain
    8.1e-10   38.2   0.3    3.7e-09   36.1   0.0    2.2  3  SH3_2          Variant SH3 domain
  ------ inclusion threshold ------
      0.044   13.9   0.0       0.67   10.1   0.0    2.2  2  SH3_10         SH3 domain
      0.096   12.0   4.6      0.034   13.5   1.1    1.9  2  DUF2220        Uncharacterized protein conserved in bacteria 
       0.22   11.3   0.0       0.42   10.4   0.0    1.4  1  DUF3104        Protein of unknown function (DUF3104)
       0.28   10.4   6.1       0.28   10.4   0.1    2.1  2  TMPIT          TMPIT-like protein
        4.4    7.2   8.8        0.1   12.5   1.1    2.0  3  HEPN_Toprim_N  HEPN/Toprim N-terminal domain 1


Domain annotation for each model (and alignments):
>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.9   7.3   1.7e-71   3.4e-68       1     238 [.       6     246 ..       6     247 .. 0.98

  Alignments for each domain:
  == domain 1  score: 229.9 bits;  conditional E-value: 1.7e-71
         BAR   1 lkKafnRasqlleekvgkaekTkLDedFeelerrldvteklieklvkelkeylqanpgarakqivleklkeqplelLaesmieagkelgedss..fg.. 95 
                 + K++ Ra+q++++k++ +e+Tk D ++ ++err++++e++++kl++e+k+y++a++g++ +qi           +++++m+e++k+++++ s  ++  
  CCE30426.1   6 FSKSLTRAPQTIKHKFNIGEHTK-DAVYIDAERRFQELETETKKLHDESKKYFEAINGMLKHQI-----------EFSQAMTEIYKPISGRVSdpDSik 92 
                 6799*******************.****************************************...........****************99665599 PP

         BAR  96 ........kalekygeavkklaqteeelekrvetnfldplrellekefkeiqkerkklehkrlDyDaakarlkklktkkskkakde...ekaeeelrkA 183
                          a+e+y+++vk+l++t++++ +++e+++++p +el+ + +k i+k++ k+ehk+lDyD+++a+lkkl++kk+++ kde   +kae e ++A
  CCE30426.1  93 pegnpegiRACEEYEAIVKELQETLAPELEMIESRVIRPATELM-DVIKVIRKTALKREHKKLDYDRHRATLKKLQDKKERSPKDEkamWKAEGESEQA 190
                 9*******************************************.****************************************************** PP

         BAR 184 qqkfeesneelkaeLpnllalevefv.nqlqafveaqldfhkqaaqlleqlqqqls 238
                 +q++e++n++lk+eLp+l+ le+ef+ + +q+f+++ql+++++++++++++++ ++
  CCE30426.1 191 TQEYEYFNNLLKDELPKLFHLEQEFIqPLFQSFYYMQLNIFYTLHERMQRCDIGYF 246
                 ***************************************************99887 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.1   5.1e-18     1e-14       1      47 [.     381     427 ..     381     428 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 5.1e-18
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSS..SEEEEEETTSTEEEEEE CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksed..gWwkgrlkgtgkeGliP 47 
                 +AlYDY a+ +++Lsf+ GDvi++++++ +  +Ww grl+  gkeG +P
  CCE30426.1 381 TALYDYSAQADGDLSFRAGDVIEIVSRTQNenEWWIGRLN--GKEGQFP 427
                 59*************************99999********..69****9 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.1   9.1e-16   1.8e-12       1      49 []     382     432 ..     382     432 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 9.1e-16
       SH3_9   1 AlypyepreddeLsLqrGDvitviee..sedgWlegsltGrtGlvPanyve 49 
                 Aly+y ++ d  Ls+++GDvi + ++   e+ W+ g+l+G+ G +P nyv+
  CCE30426.1 382 ALYDYSAQADGDLSFRAGDVIEIVSRtqNENEWWIGRLNGKEGQFPGNYVQ 432
                 8**********************9773358********************7 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.7   9.4e+03       2      10 ..     100     108 ..     100     112 .. 0.85
   2 ?   -1.1   0.0      0.78   1.6e+03      22      29 ..     137     147 ..     137     184 .. 0.77
   3 !   36.1   0.0   1.8e-12   3.7e-09       5      55 ..     383     432 ..     379     433 .] 0.86

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.7
                 EEESS-B-S CS
       SH3_2   2 vraiedyvg 10 
                 +ra+e+y++
  CCE30426.1 100 IRACEEYEA 108
                 799***986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.78
                 EEEEEE..... CS
       SH3_2  22 dvikvls...l 29 
                 dvikv++   l
  CCE30426.1 137 DVIKVIRktaL 147
                 89***976663 PP

  == domain 3  score: 36.1 bits;  conditional E-value: 1.8e-12
                 SS-B-SCGCCB--B-TTEEEEEE..EEEECT.TEEEEEECCCEEEEEGCGEE CS
       SH3_2   5 iedyvgedkseLsfkkGdvikvlslgskdsd.gwwegevgGrvGlfPsslve 55 
                 + dy ++  + Lsf++Gdvi ++  +++ ++ +ww+g+ +G+ G fP ++v+
  CCE30426.1 383 LYDYSAQADGDLSFRAGDVIEIV--SRTQNEnEWWIGRLNGKEGQFPGNYVQ 432
                 66899999999************..4444446*******************8 PP

>> SH3_10  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.21   4.2e+02       6      24 ..     260     278 ..     258     321 .. 0.85
   2 ?   10.1   0.0   0.00034      0.67      13      59 ..     378     428 ..     366     431 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.21
      SH3_10   6 rskpgepiaveALcdykqa 24 
                 r  ++e++++ ++c +k+ 
  CCE30426.1 260 RADIQEQTEALSICRFKTT 278
                 567999**********986 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00034
      SH3_10  13 iaveALcdykqa...evsiekgeevtLldnsdre.kWkVqtssGaemtvPg 59 
                  +v+AL dy  +   + s++ g+ + +++ +++e +W + + +G+e + Pg
  CCE30426.1 378 ETVTALYDYSAQadgDLSFRAGDVIEIVSRTQNEnEWWIGRLNGKEGQFPG 428
                 5899**99987766799************9987637**************8 PP

>> DUF2220  Uncharacterized protein conserved in bacteria C-term(DUF2220)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.64   1.3e+03     135     164 ..      40      68 ..      24      73 .. 0.62
   2 ?   13.5   1.1   1.7e-05     0.034     120     172 ..     161     217 ..     156     222 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.64
     DUF2220 135 aeiarelprLteaeaklyedlledelkerl 164
                 +e  +e+++L+++ +k +e++   +lk+++
  CCE30426.1  40 QELETETKKLHDESKKYFEAING-MLKHQI 68 
                 44445566688877777776544.566665 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.7e-05
     DUF2220 120 etlekhrkgvadee.saeiare...lprLteaeaklyedlledelkerlRLEQErip 172
                 +tl+k +++ ++ + +++   +    ++  ++e++ +++ll+del +  +LEQE i+
  CCE30426.1 161 ATLKKLQDKKERSPkDEKAMWKaegESEQATQEYEYFNNLLKDELPKLFHLEQEFIQ 217
                 5666665555555433333222444566899************************94 PP

>> DUF3104  Protein of unknown function (DUF3104)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00021      0.42       3      30 ..     394     418 ..     393     424 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00021
     DUF3104   3 LgvkaGdlVivkplsnaqsaeedwWmGl 30 
                 L+++aGd++ +  +s +q  e++wW+G 
  CCE30426.1 394 LSFRAGDVIEI--VSRTQ-NENEWWIGR 418
                 7899***9877..46666.899*****7 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00014      0.28       2      81 ..      37     123 ..      36     128 .. 0.86
   2 ?    1.8   4.3     0.057   1.1e+02       5      89 ..     115     201 ..     111     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
       TMPIT   2 eeweelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk.......eeeeeeveelkeelkerkkv 81 
                 ++++ele+e+k+l+++ k+y + ++ + k+q ++s+++++  k ++   s+ +++k + +       ee+e +v+el+e+l+ + ++
  CCE30426.1  37 RRFQELETETKKLHDESKKYFEAINGMLKHQIEFSQAMTEIYKPISGRVSDPDSIKPEGNpegiracEEYEAIVKELQETLAPELEM 123
                 56899********************************************99999999977667777788888888888887766555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.057
       TMPIT   5 eelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesll 89 
                 e+l+ e++ +e++  +  ++l ++ k + k++ + +++k ++ + +++lkkl+ +++   ++e+++ + + e +++++  +  ++ll
  CCE30426.1 115 ETLAPELEMIESRVIRPATELMDVIKVIRKTALKREHKKLDYDRHRATLKKLQDKKErsPKDEKAMWKAEGESEQATQEYEYFNNLL 201
                 5677788888888888899999999***************************99966557778888888877777777666555555 PP

>> HEPN_Toprim_N  HEPN/Toprim N-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.88   1.8e+03      18      58 ..      28      71 ..      18      79 .. 0.69
   2 ?   12.5   1.1   5.1e-05       0.1      80     173 ..     104     201 ..     101     209 .. 0.74
   3 ?   -4.2   0.1       6.6   1.3e+04      78      94 ..     252     268 ..     249     282 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.88
  HEPN_Toprim_N 18 knhygidhgwlFqekDrvrrrsdqidydyy...eddeeseygyr 58
                   k  ++id +  Fqe + ++ + ++ +++y+     + ++++ ++
     CCE30426.1 28 KDAVYIDAERRFQELETETKKLHDESKKYFeaiNGMLKHQIEFS 71
                   45557777888888888888888877777776666666666655 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.1e-05
  HEPN_Toprim_N  80 aeyeeyvkeaieeresfqeaede....areellsfeeflkafvlndwlsalkkaiddgiieledeereeeepegrlakialdr.ddlaysessvlg 170
                    +eye+ vke +e   ++ e+ +     + +el+  ++++++++l++    l+ +  + ++++  +++e+ +++++   +  +  +++a++e+++++
     CCE30426.1 104 EEYEAIVKELQETLAPELEMIESrvirPATELMDVIKVIRKTALKREHKKLDYDRHRATLKKLQDKKERSPKDEKA-MWKAEGeSEQATQEYEYFN 198
                    89**********999555554445668************************7555555555555555555555544.34333369*********98 PP

  HEPN_Toprim_N 171 sll 173
                     ll
     CCE30426.1 199 NLL 201
                    776 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 6.6
  HEPN_Toprim_N  78 aeaeyeeyvkeaieere 94 
                    +e+++ e +++ +e+ e
     CCE30426.1 252 IEEAFIEKRADIQEQTE 268
                    56666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1131  (0.0630822); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2978.15
//
Query:       CCE30427.1  [L=184]
Description: related to mismatched base pair and cruciform dna recognition protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-18   64.5  24.0    7.1e-12   45.1   6.3    3.9  3  CsbD      CsbD-like


Domain annotation for each model (and alignments):
>> CsbD  CsbD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.5     1e-09   1.9e-05       7      44 ..      14      51 ..       9      56 .. 0.90
   2 !   45.1   6.3   3.9e-16   7.1e-12       4      49 ..      78     123 ..      75     127 .. 0.95
   3 !    4.0   3.5    0.0027        48       9      43 ..     131     165 ..     125     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1e-09
        CsbD  7 aeqvkGkvKeaaGkaTgdekleaeGkadqlkGkaqqky 44
                ++ ++G+++ a+G +Tg++  +a+G  +q ++k ++ +
  CCE30427.1 14 VDSATGAIQSAVGSLTGNTAEQAKGDVKQDAAKTEHDA 51
                6899****************************998776 PP

  == domain 2  score: 45.1 bits;  conditional E-value: 3.9e-16
        CsbD   4 kgkaeqvkGkvKeaaGkaTgdekleaeGkadqlkGkaqqkygdakd 49 
                  g ++q  G++Ke++G ++g+++l+a+G+ ++++G+ q++ g++kd
  CCE30427.1  78 AGSWNQTVGSAKETVGNIVGSDDLKAAGRQQNAEGQQQEAKGQVKD 123
                 699******************************************9 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0027
        CsbD   9 qvkGkvKeaaGkaTgdekleaeGkadqlkGkaqqk 43 
                  v+G+v  a+  +Tgd++ e+     ++ Gkaqq+
  CCE30427.1 131 RVQGTVGGAVASLTGDKEGETHYDQMRADGKAQQR 165
                 68899999999999999877777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1522.20
//
Query:       CCE30428.1  [L=1362]
Description: uncharacterized protein CPUR_04276 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.44
# Mc/sec: 9241.15
//
Query:       CCE30429.1  [L=1046]
Description: probable transcription elongation complex subunit (CDC68) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-55  186.2   0.4    1.4e-54  184.3   0.4    2.1  1  FACT-Spt16_Nlob  FACT complex subunit SPT16 N-terminal lobe d
    9.3e-55  185.0   0.2    9.3e-55  185.0   0.2    2.9  3  SPT16            FACT complex subunit (SPT16/CDC68)
    3.4e-25   89.0   0.0    6.2e-25   88.1   0.0    1.4  1  Peptidase_M24    Metallopeptidase family M24
    7.5e-16   58.3   1.3    1.5e-15   57.4   0.2    2.1  2  Rtt106           Histone chaperone Rttp106-like


Domain annotation for each model (and alignments):
>> FACT-Spt16_Nlob  FACT complex subunit SPT16 N-terminal lobe domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.3   0.4   3.1e-58   1.4e-54       1     160 [.       6     165 ..       6     166 .. 0.97

  Alignments for each domain:
  == domain 1  score: 184.3 bits;  conditional E-value: 3.1e-58
                      --HHHHHHHHHHHHHHHHSHHHHH...STT-SEEEEEE-S--TT----HHHHHHHHHHSS--SSEEEEEESSEEEEEEEHHHHHTTGGGCTSTT CS
  FACT-Spt16_Nlob   1 idkkafkkRlkklysawkeeeedk...fssvdallvvlGksdeenpykKstalqtWLlGyefpdtlilltkkkiviltskkKaklLeplkekke 91 
                      id+k f++R++++ +awk++  +k   f+++++++v++Gk +e  +++K++a+++WLlGyefp+tl+llt +++++lt++kKak+Le+lk ++ 
       CCE30429.1   6 IDSKLFQERISHFATAWKNDLRTKdglFGGASSIVVMMGKMEEMPEFHKNNAMHFWLLGYEFPTTLMLLTVETLYVLTTQKKAKHLEQLKGGR- 98 
                      8*****************666655677*****************************************************************9. PP

                      -.SSEEEEEEE-S-HHHHHHHHHHHHHHHHTTTSEEEE-TT----SHHHHHHHHHHCCCGGG.EEEE-HH CS
  FACT-Spt16_Nlob  92 eekvevellvreKdadenkknfeklieaikeagkkvGvlaKdkseGkfveewkkalkeakke.eevDvsa 160
                         +++e+lvr Kda+en+++f ++ ++ik+ag+kvG++ Kd+s+G+fv+ew+k+++e++k+ e+vD+++
       CCE30429.1  99 ---FPIEVLVRGKDAAENEQLFVTIADKIKAAGDKVGTIVKDTSKGPFVDEWNKVFSEKCKDvETVDITP 165
                      ...9****************************************************************97 PP

>> SPT16  FACT complex subunit (SPT16/CDC68)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.0      0.58   2.6e+03      69     119 ..     470     505 ..     442     519 .. 0.54
   2 !  185.0   0.2   2.1e-58   9.3e-55       1     151 []     547     697 ..     547     697 .. 0.99
   3 ?   -3.2   0.0       1.9   8.5e+03      20      27 ..     884     891 ..     882     932 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.58
       SPT16  69 eltfrskdekklqevfreikelkkkvkkreaekkekedlveqekLilsksk 119
                 ++t    +               ++ +++ +e +e++   +q++L  +k+k
  CCE30429.1 470 NITSTRLR---------------SERSNQVDEGAEQKRKEHQKELAHKKQK 505
                 33333333...............3333333344444444444444444432 PP

  == domain 2  score: 185.0 bits;  conditional E-value: 2.1e-58
       SPT16   1 iyvdkkketillPifGiavPFhistiknvskseegdytylrinFnvpgsavgkkeealfknpeaifikeltfrskdekklqevfreikelkkkvkkrea 99 
                 ++vd++++t++lPi G++vPFhi+tikn+sks+e+d++ lrinF +pg+ v++k++++f+  +a+f+++ltfrs+d ++ +e++ +i+++k+++ k+e+
  CCE30429.1 547 VVVDSRNSTVILPILGRPVPFHINTIKNASKSDENDFSFLRINFLSPGQGVVRKDDQPFEDASAHFVRSLTFRSTDGERYSEIAAQISNMKRDAVKKEQ 645
                 58*********************************************************99************************************** PP

       SPT16 100 ekkekedlveqekLilskskrkprLkdlyirpniegkklaGtleaheNGlRy 151
                 ekk++ed+veq+kL++ +++r+ +L+++yirp++egk++ G++e+h+NG+Ry
  CCE30429.1 646 EKKDMEDVVEQDKLVEIRNRRPAVLDNVYIRPAMEGKRVPGKVEIHQNGIRY 697
                 ***************************************************9 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.9
       SPT16  20 PFhistik 27 
                 P+hi+ti 
  CCE30429.1 884 PYHINTIP 891
                 88999884 PP

>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.0   1.4e-28   6.2e-25       2     208 ..     182     422 ..     181     423 .. 0.81

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 1.4e-28
                    HHHHHHHHHHHHHH.HHHHHHH......TTCBHHHHHHHHHHHHHHHTT....................TCEESSSSEEEEGGGGGSTTT.BCSSS CS
  Peptidase_M24   2 lirkaariasaale.avleaik......pgvterelaaeieattlkrhg....................arglafppivasgenaavlhy.tpndr 69 
                    ++r a++++ a ++ ++l+++       ++vt+ +la++++++ l ++                     + ++   p ++sg ++++  + ++n++
     CCE30429.1 182 AMRTASKACVALMTpYFLDEMSnildseKKVTHSQLAEKVDRK-LDDTKfwktvelpnkgklpsdfdagQLDWILGPAIQSGGKYDLRFAsDANNE 276
                    5788888888888855556544222333589999999999976.666445555556666677777777799***************9888566899 PP

                    B--TTEEEEEEEEEEETTEEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHH.HT.TBCCGBSSCSEEEESSSSSE CS
  Peptidase_M24  70 vlkegdlvlidagaeydgyasDitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevle.sa.glakffphglGHgvGlevhd 163
                     l++  +++  +g +y+ y+s i+rT+lv+ ++++q+ +y+++  ++++++k+++ G+t++e++ +a ++++ ++ +++k+f +++G+g+Gle +d
     CCE30429.1 277 NLHA-GIIIAGMGLRYKSYCSMIARTYLVD-PNKAQESNYKLLHMIHNNILKEIQDGMTAKEVYLKALNLIKvKKpEMEKHFLKNVGWGIGLENRD 370
                    9*99.8***********************6.7777899**********************************6556789****************8 PP

                    EEEEESSSTTCSSB--TTBEEEEEEEEEEET.........TTEEEEEBEEEEEE CS
  Peptidase_M24 164 egpsvsresndgrkleeGmvftiEpgiyfap.........geggvriedtvlvt 208
                        v + ++++r+l++Gm++ i++g+  ++          +++  + dt+ vt
     CCE30429.1 371 P-TLVLN-AKNNRVLKDGMTLIIHTGFQDIDnpqpqdknsKVYSLVLTDTIRVT 422
                    6.44664.667*****************66544555554333799999999998 PP

>> Rtt106  Histone chaperone Rttp106-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.4   6.2e+03      45      65 ..     737     760 ..     709     763 .. 0.60
   2 !   57.4   0.2   3.3e-19   1.5e-15       2      88 ..     824     910 ..     823     911 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.4
      Rtt106  45 v...svtsrtfdlvvelkkeeveF 65 
                     + +++t d+ + ++ ++++F
  CCE30429.1 737 PiivGNKKKTKDVQFYREATDIQF 760
                 133345566666666666666666 PP

  == domain 2  score: 57.4 bits;  conditional E-value: 3.3e-19
      Rtt106   2 gVkasrkakeGlLyflekgllfgfkkPllfiplediesvsfeRvsvtsrtfdlvvelkk...eeveFsmidqeelegidefvkskgikik 88 
                 gV+++   +++++++++++l+ +++ P+++i++edie++++eRv++  ++fd+v+ +k+   +++++++i+ e l+++++f++s++i+++
  CCE30429.1 824 GVPFR---SNVFIQPTTDCLMQVVEPPFMVITIEDIEIAHLERVQFGLKNFDMVFIFKDfarAPYHINTIPVEFLDQVKDFLDSSDIAYS 910
                 67777...89***********************************************88999*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1046 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1361  (0.0759105); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 6699.74
//
Query:       CCE30430.1  [L=241]
Description: uncharacterized protein CPUR_04278 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1839.05
//
Query:       CCE30431.1  [L=285]
Description: related to MNORI-2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-06   27.8   0.0    1.2e-05   24.8   0.0    2.2  2  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
    4.7e-06   26.2   0.0    7.2e-06   25.6   0.0    1.3  1  Pkinase      Protein kinase domain
    2.8e-05   24.2   0.4     0.0051   16.8   0.1    2.4  2  APH          Phosphotransferase enzyme family
     0.0018   17.9   0.0     0.0039   16.8   0.0    1.5  1  RIO1         RIO1 family
  ------ inclusion threshold ------
      0.057   12.7   0.0      0.065   12.5   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.4e-09   1.2e-05      50     153 ..      71     173 ..      55     183 .. 0.82
   2 ?   -2.7   0.0      0.84     3e+03     160     191 ..     210     240 ..     203     257 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 3.4e-09
         Kdo  50 rfklgrtravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlega...qdLedllakwae..laeelkrallkavgrliaklhragvnHad 143
                  ++l r r+  E r+l + +++g++vp   a  + +        l+ e + g+    +++++l +  e   a+ + r l++++g +i ++h++g+ H+d
  CCE30431.1  71 DHRLTRHRILSEARILAKCQREGLRVPAVYAIDESA------GWLMLEWIPGTpvrVNINNWLGTRTEgiEADDRLRDLMRRIGLAIGRMHKIGIVHGD 163
                 4789999999****************9766665543......358888888874446999999997779878888899********************* PP

         Kdo 144 lyaknillqq 153
                 l   n++l  
  CCE30431.1 164 LTTSNMMLCP 173
                 ***9998865 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.84
         Kdo 160 eiwliDldkarlrlradrwrekdLarLkrsfl 191
                 ei++iDl  a   +  +  r  dL  L+r f 
  CCE30431.1 210 EIVIIDLGLASGAV-HEEERAVDLYVLERAFG 240
                 67888888888877.78888889988888775 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0     2e-09   7.2e-06      42     151 ..      71     225 ..      34     243 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2e-09
                 H.....HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEB....HHHHHH..HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGE CS
     Pkinase  42 e.....kkvlrEikilkklkhpnivrlyevfeekdelylvleyvegge....ladlle..rkgslseeeakkiakqilegleylHskgiiHrDlKpeNi 129
                 +     +++l+E +il+k++ + +     +  +++  +l+le+++g+     ++++l   ++g+ +++++++++++i  ++  +H+ gi+H Dl ++N+
  CCE30431.1  71 DhrltrHRILSEARILAKCQREGLRVPAVYAIDESAGWLMLEWIPGTPvrvnINNWLGtrTEGIEADDRLRDLMRRIGLAIGRMHKIGIVHGDLTTSNM 169
                 134455899***********988866666777889999*******999555555555575566677789****************************** PP

                 EEET..................................TTEEEE-SGTTSEESSSS CS
     Pkinase 130 Lide..................................kgelKitDFGlakeless 151
                 ++                                    +ge+ i+D+Gla+ + ++
  CCE30431.1 170 MLCPpsrataataattattgttattattgtlcqdvdelSGEIVIIDLGLASGAVHE 225
                 *9854677777777777777777777777777766666666777777777665555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.4e-06    0.0051      35     108 ..      77     157 ..      35     158 .. 0.85
   2 !    7.3   0.1    0.0011       4.1     163     181 ..     154     172 ..     134     179 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.4e-06
                 HHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS............HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  35 eeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr............klsaaqlpellealgeflaalhqv 108
                  +i +e+++l+  ++ g++vP+v+a    de +g  ++++e++pg++++              + ++ l++l +++g +++++h +
  CCE30431.1  77 HRILSEARILAKCQREGLRVPAVYA---IDESAG--WLMLEWIPGTPVRVninnwlgtrtegIEADDRLRDLMRRIGLAIGRMHKI 157
                 567789999999999999*******...778888..89999999999999999999999998677889999999999999999976 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0011
                 SS-EEEE-SS-SGGGEEEC CS
         APH 163 elptvllHgDlhpgNllvd 181
                   + +++HgDl + N+++ 
  CCE30431.1 154 MHKIGIVHGDLTTSNMMLC 172
                 56779************85 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.1e-06    0.0039      53     139 ..      77     171 ..      62     176 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHHHHHHHTT--S--EEEEETTE..EEEE--EETTEEG.GBHHHCG.-...HHHHHHHHHHHHH...HHHHHHHTSTEEESS-STTSEEE CS
        RIO1  53 lwaekEfrnLkrleeagvpvPkpielkrhv..lvmefigedgvaa.pklkdve.e...eeeaeelyeevle...emrklykeaglvHaDLSeyNvlv 139
                      E r+L + +++g++vP ++++ + +  l++e+i   g+++ +++++   +     ea++ ++++++     +  +++ g+vH+DL   N+++
  CCE30431.1  77 HRILSEARILAKCQREGLRVPAVYAIDESAgwLMLEWIP--GTPVrVNINNWLgTrteGIEADDRLRDLMRrigLAIGRMHKIGIVHGDLTTSNMML 171
                 5556799****************9998765559*****9..55542345554433222445555666666633334456789************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.8e-05     0.065      44     138 ..      75     173 ..      34     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
                  HHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTE....BHHHHHHHTCTTTSBHHH.HHHHHHHHHHHHHHHHHTTEEEST-SGGGEEE CS
  Pkinase_Tyr  44 ekeelleeakimkklkhpnivkllgvctkeepllivteyvkgG....dLlkfLrkkekekltlkd.llsfalqvAkGmeyLeskklvHrdlaarNvLl 136
                  +++++l+ea+i+ k++ + +       ++e+  ++++e+++g     ++++ L ++ +e ++ +d l +++  +  ++  +++  +vH dl++ N++l
   CCE30431.1  75 TRHRILSEARILAKCQREGLRVPAVYAIDESAGWLMLEWIPGTpvrvNINNWLGTR-TEGIEADDrLRDLMRRIGLAIGRMHKIGIVHGDLTTSNMML 171
                  478899*********888875555555577888999****9986666889999999.777777762557999*************************9 PP

                  EE CS
  Pkinase_Tyr 137 se 138
                  + 
   CCE30431.1 172 CP 173
                  75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1955.61
//
Query:       CCE30432.1  [L=336]
Description: related to gamma-glutamylcysteine synthetase light chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-06   26.4   0.0    5.2e-06   25.9   0.0    1.1  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.23   10.7   0.6       0.31   10.3   0.6    1.1  1  ORC6          Origin recognition complex subunit 6 (ORC6)


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   5.8e-10   5.2e-06      60     186 ..     115     257 ..     106     273 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 5.8e-10
                   TGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-...................HHHHHHHHHHHHHTTSEEEEEE CS
  Aldo_ket_red  60 kreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslp..................sieevldaleelvkeGkiraiGv 138
                   +  ++ i+ K+ +     + + + + i e+l    k+Lgt ++Dll    p  s +                  + + ++ +le+l+  G ++ +Gv
    CCE30432.1 115 DTNQYEITVKL-FLLPGTSLSDRGQYIAEALALVAKELGTPTIDLLVASFPGISFEgtceweadkknahqgnldDELATWTILEDLHNRGIAKRLGV 210
                   55667788888.7777788888889999********************************************************************* PP

                   ES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EE CS
  Aldo_ket_red 139 Snfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpl 186
                   ++f  e+l++  + + v +++ q++  ++    +  l +l++++g+ l
    CCE30432.1 211 AEFGSEKLSAFIERARVAPAVDQINLQDC-CNVPPPLKRLAEEHGIEL 257
                   **********99****************9.566677888888888876 PP

>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.6   3.4e-05      0.31      65     105 ..       9      72 ..       5     125 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.4e-05
        ORC6  65 kkiPlppkaykklldlfrqsLsnss..satstPskspsspst.....................d 105
                 +k++   ++   ll+++r+++s+ +   a+s+Ps++p+++++                     +
  CCE30432.1   9 RKSGSGNRSNLELLNSLRDNISEAKrdYASSSPSRAPTTKPNsaavangnscstssqnghgngN 72 
                 6666667777789*************99************997766655444433333333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2395.19
//
Query:       CCE30433.1  [L=155]
Description: probable clathrin-associated adaptor complex ap-1 small chain sigma1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-51  173.9   1.1      2e-51  173.7   1.1    1.0  1  Clat_adaptor_s  Clathrin adaptor complex small chain
  ------ inclusion threshold ------
      0.029   15.1   0.1      0.053   14.3   0.1    1.4  1  PulA_N1         Pullulanase N1-terminal domain


Domain annotation for each model (and alignments):
>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.7   1.1   2.2e-55     2e-51       2     141 ..       3     142 ..       2     143 .. 0.98

  Alignments for each domain:
  == domain 1  score: 173.7 bits;  conditional E-value: 2.2e-55
                     EEEEEEE-TTS-EEEEEESSSS-CHHHHHHHHHHHHHHHTT-SSS-SEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT CS
  Clat_adaptor_s   2 ikaililnkkgkvrlakfytavddkkkqklieevyelvsaRdsklsniveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdkyfg 96 
                     i+++++l+++gkvrlak++t+++ k+k+k++++v +lv+aR + ++n++e++d+k++Y+ryasL+F+ + ++ +neli le+ih++ve +dky+g
      CCE30433.1   3 IQYLILLSRQGKVRLAKWFTTLSPKEKAKIVKDVAQLVLARRTRMCNFLEYKDTKIVYRRYASLFFIAGCSSDDNELISLEIIHRYVEQMDKYYG 97 
                     89********************************************************************************************* PP

                     S-SHHHHHHCHHHHHHHHHCCEETTEES---HHHHHHCHHHHHHH CS
  Clat_adaptor_s  97 nVceldlvfnfekvylildEivsgGeiletskkevlkrvelldkl 141
                     nVceld++f f k y ildE++ +Ge++e+skk+vl+ + + d+l
      CCE30433.1  98 NVCELDIIFSFTKAYYILDELLLAGELQESSKKNVLRCIGQQDSL 142
                     ************************************999888765 PP

>> PulA_N1  Pullulanase N1-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   5.9e-06     0.053      30      79 ..      74     125 ..      58     128 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.9e-06
                 EESSEEEEEEEEEEE..EESSEEEEEEE-SS---TTS--EEE-TTS-EEEEE CS
     PulA_N1  30 keedekieLeikeke..eleeevkYvckleeelelgkeylildehgnktdLq 79 
                 ++++e i+Lei +++  ++++++  vc+l++ +++ k y+ilde     +Lq
  CCE30433.1  74 SDDNELISLEIIHRYveQMDKYYGNVCELDIIFSFTKAYYILDELLLAGELQ 125
                 478999*****998611455555569*****************987776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1051.22
//
Query:       CCE30434.1  [L=345]
Description: uncharacterized protein CPUR_04282 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-54  182.7   0.0    8.6e-54  182.3   0.0    1.2  1  Maf1         Maf1 regulator
  ------ inclusion threshold ------
      0.077   12.8   1.3       0.16   11.8   1.3    1.5  1  CRAM_rpt     Cysteine-rich acidic integral membrane protein p
        2.4    7.4  11.6        3.5    6.9  11.6    1.2  1  NOA36        NOA36 protein


Domain annotation for each model (and alignments):
>> Maf1  Maf1 regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.3   0.0   1.4e-57   8.6e-54       1     174 []      25     222 ..      25     222 .. 0.92

  Alignments for each domain:
  == domain 1  score: 182.3 bits;  conditional E-value: 1.4e-57
        Maf1   1 iegrlelYsckaagsdkklykkiekeleselessskeslsls...........aaseslssssPfgplsdkssrktlayLiatLnasfpdYDFss.lrs 87 
                 ++g+++lY++k++g dkkly++iekel s++++  + s+sls            + + +s++sPfgpls+ ssr+t+ayLiatLnas+p+YDFs+ lr+
  CCE30434.1  25 VTGDCDLYTTKSTGADKKLYRSIEKELCSQHAALLQFSASLSppdrehmlatsPDLQLFSTASPFGPLSEMSSRRTFAYLIATLNASHPHYDFSHvLRP 123
                 689*************************************99*********98889999**************************************** PP

        Maf1  88 seFkkekslksvinnidstLsslveekyeelre.................klWklideeidlkdCdiYsYkpdedsdpf.keegalwsfnYFffnkklK 168
                  +Fk+e++l++v+ n+ds L+++    ++                     ++W+lid+e+ l++C+i+s++p+   dp+ ++e+a+w+ +YFff+++lK
  CCE30434.1 124 GDFKRERNLRRVMVNLDSILQNVR-PGFD---AasfdssqggepgsvwgpQCWSLIDKEMGLSECTIFSWRPNP--DPLeEDESAIWAAHYFFFSRALK 216
                 **********************32.2222...133345778888888888***********************7..7**76779*************** PP

        Maf1 169 rvlfls 174
                 rv++l+
  CCE30434.1 217 RVAYLY 222
                 ****96 PP

>> CRAM_rpt  Cysteine-rich acidic integral membrane protein precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.3   2.7e-05      0.16      13      22 .]      20      29 ..      19      33 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.7e-05
    CRAM_rpt 13 TddCslTGdC 22
                T dCs+TGdC
  CCE30434.1 20 TPDCSVTGDC 29
                5566666666 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  11.6   0.00059       3.5     228     297 ..     255     325 ..     233     337 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00059
       NOA36 228 lstrslkfgrqk.qadgsddddddeedsdydaylkalasgddeddegdedd.dddddeedddeeeddedeee 297
                  s+r  ++g  +  ++g+ + ddde+  d + +++    gd     +d+d+ ddddde dd+++e+de+e+ 
  CCE30434.1 255 TSARRISHGLGQyTSGGAYSFDDDESRLDDGLFWNRGEDGD-LVLFSDDDYfDDDDDEMDDEDDENDEQEDG 325
                 45555555443303344445555667777777777765553.333333333133333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2660.82
//
Query:       CCE30435.1  [L=111]
Description: uncharacterized protein CPUR_04283 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 904.96
//
Query:       CCE30436.1  [L=60]
Description: uncharacterized protein CPUR_04284 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.17   12.1   0.0    1.3  1  CXCR4_N   CXCR4 Chemokine receptor N terminal


Domain annotation for each model (and alignments):
>> CXCR4_N  CXCR4 Chemokine receptor N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.7e-06      0.17      11      29 ..      24      43 ..      15      44 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.7e-06
     CXCR4_N 11 lGSGDyd.dykEpCfqeENa 29
                 GSG +d d + +C+q EN+
  CCE30436.1 24 TGSGGFDmDTTKVCYQPENE 43
                58998877779********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 534.22
//
Query:       CCE30437.1  [L=272]
Description: related to ammecr1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-42  144.5   0.0    2.4e-42  144.4   0.0    1.2  1  AMMECR1   AMMECR1
    0.00052   19.4   0.6    0.00095   18.5   0.0    1.6  2  SLAIN     SLAIN motif-containing family
  ------ inclusion threshold ------
       0.83   10.3   5.1       0.77   10.4   1.1    2.3  2  Apelin    APJ endogenous ligand


Domain annotation for each model (and alignments):
>> AMMECR1  AMMECR1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.4   0.0     4e-46   2.4e-42      28     164 ..      80     252 ..       7     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 144.4 bits;  conditional E-value: 4e-46
                 S............EEEEEEEEE..EE....................CCECCCECEEEEEEHHHHHHHHHHHHHHT-TTS----HHHHTTEEEEEEEE-- CS
     AMMECR1  28 e............kaglFVtlk..ekkg..................eLRGCiGtleperpLaeevaenAlaaAfeDpRFspvtaeElpeleveVsvLte 94 
                              +a+lFVt++  +                     +LRGCiGt+e ++pL  ++ e+A+a++++D+RFsp+++ Elp+l+v+V++Lt+
  CCE30437.1  80 AaaagastslgtsSAPLFVTWNtiS--DdkslddddeededeegdhSLRGCIGTFE-SQPLSIGIPEYAIASSLQDTRFSPIKKTELPSLRVTVTLLTD 175
                 044444444555599*******642..34689************************.9***************************************** PP

                 -EE--.GGG--TTT-EEEEE.ET...TEEEEE-THHHHHTT--HHHHHHHHHHHHTS-T..TCCCSTTSEEEEE-EE CS
     AMMECR1  95 pepiv.ledlevgkhGliie.kg...srsatlLPqvaveqgwdkeeflasllrKaglrp..dewkdseikltryeve 164
                 +e+++ + d+e+g+hG+ ++ ++   ++ +t+LP+va+eq+w++ee+l++l rK g+r+  + w + ++k+try+++
  CCE30437.1 176 FEKVDdPYDWEIGVHGIKLSfTDrghRYGGTYLPNVAPEQRWNREETLKNLARKTGWRAgrSSWASLQLKVTRYRGR 252
                 ****55777**********976345699******************************98555***********976 PP

>> SLAIN  SLAIN motif-containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.4     0.084     5e+02     340     382 ..      39      80 ..      30      88 .. 0.51
   2 !   18.5   0.0   1.6e-07   0.00095     149     238 ..      76     167 ..      72     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.084
       SLAIN 340 atayvsptvqgskslpssaslqslsvrkaqssgsplpskpaga 382
                 +++y sp v+g++  p+s+     +++++++s+s+ p +p+ a
  CCE30437.1  39 SLSYSSPAVNGTR-QPASQRPGGFNAANSSASSSTRPGRPSYA 80 
                 4566666666643.34444444444344444444445554443 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1.6e-07
       SLAIN 149 rqdyasts.asasrrsssaSlqslrrgtlsdqeldaysledeeeeydsl..pqprltrfsplqrglphsstfsSprdsrrsrsPstsqeys.sr 238
                 r  ya+++ as s  +ssa l  +  +  +d+ ld+++ ede+ee d+       ++  +pl  g+p+    sS++d+r s  P +++e+   r
  CCE30437.1  76 RPSYAAAAgASTSLGTSSAPLFVTWNTISDDKSLDDDDEEDEDEEGDHSlrGCIGTFESQPLSIGIPEYAIASSLQDTRFS--PIKKTELPsLR 167
                 56799998899999*******9999999999***********99999885645567888999999**************99..99988876445 PP

>> Apelin  APJ endogenous ligand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.11   6.3e+02      24      37 ..      48      61 ..      45      63 .. 0.87
   2 ?   10.4   1.1   0.00013      0.77       4      46 ..     211     252 ..     208     254 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
      Apelin 24 kgaRngpgqrqagr 37
                +g+R++++qr++g 
  CCE30437.1 48 NGTRQPASQRPGGF 61
                689*********95 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00013
      Apelin   4 astedgkelEegsvrklvqpkgaRngpgqrqagrrkfRRqRPR 46 
                 + +e++ + Ee ++++l+++ g R+g++ + + + k+ R R R
  CCE30437.1 211 VAPEQRWNREE-TLKNLARKTGWRAGRSSWASLQLKVTRYRGR 252
                 67888888899.*******************999999999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1945.32
//
Query:       CCE30438.1  [L=678]
Description: uncharacterized protein CPUR_04286 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-07   30.3   1.1    8.8e-07   28.7   1.1    1.9  1  F-box       F-box domain
    2.5e-06   27.3   1.1    2.5e-06   27.3   1.1    2.0  2  F-box-like  F-box-like
     0.0027   18.4   0.2      0.012   16.3   0.1    2.3  2  TPR_14      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.024   15.0   8.1        2.3    8.8   0.1    5.8  6  LRR_4       Leucine Rich repeats (2 copies)
       0.09   12.6   0.2         16    5.5   0.0    3.2  3  TPR_1       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   1.1   2.4e-10   8.8e-07       4      40 ..     187     223 ..     185     225 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.4e-10
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwrilidsd 40 
                 ++LP e++r+I+  L++++l  + rV+k+w +++ s+
  CCE30438.1 187 LCLPAEIVRQIFLLLDFTELPVCLRVCKKWARILTSP 223
                 79******************************99875 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       3.8   1.4e+04      26      36 ..      52      62 ..      51      64 .. 0.82
   2 !   27.3   1.1   6.9e-10   2.5e-06       3      38 ..     188     223 ..     186     234 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.8
  F-box-like 26 lVCrrWrrval 36
                ++C+   rva+
  CCE30438.1 52 CTCKNYERVAA 62
                58**9999995 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 6.9e-10
  F-box-like   3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt 38 
                  LP Ei  qIF  L++++L  + +VC++W+r+  ++
  CCE30438.1 188 CLPAEIVRQIFLLLDFTELPVCLRVCKKWARILTSP 223
                 6***********99******************9554 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         5   1.8e+04      16      27 ..      26      37 ..      19      37 .. 0.73
   2 !   16.3   0.1   3.4e-06     0.012       2      42 ..      93     133 ..      92     135 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5
      TPR_14 16 dpdeAiallrra 27
                ++++A++ + ra
  CCE30438.1 26 EHEQAVKFFTRA 37
                678888877765 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 3.4e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 +al +l + ++alG++d+Ai+ ++++l+laP  ++ +l+l+
  CCE30438.1  93 QALDLLISTFEALGKLDQAINNAEWMLELAPRLPDGYLRLG 133
                 588999*****************************999997 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.95   3.4e+03      21      32 ..     163     174 ..     154     181 .. 0.74
   2 ?    2.6   0.2     0.057     2e+02       2      33 ..     285     297 ..     276     320 .. 0.58
   3 ?    8.8   0.1   0.00064       2.3      11      34 ..     358     379 ..     342     391 .. 0.75
   4 ?    3.1   0.1     0.038   1.4e+02       1      18 [.     368     392 ..     368     412 .. 0.54
   5 ?   -0.6   0.0      0.56     2e+03      21      31 ..     463     473 ..     453     477 .. 0.75
   6 ?    2.2   0.0     0.075   2.7e+02      18      30 ..     596     608 ..     590     616 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.95
                 H-TT--EEE-.- CS
       LRR_4  21 klpnLkeLdLsg 32 
                 + p+L++L++ +
  CCE30438.1 163 SSPKLQQLYVAR 174
                 479999999855 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.057
                 S--EEE--SS---E-S-HHH-TT--EEE-.-S CS
       LRR_4   2 nLevLdLsnNqltdiplleklpnLkeLdLsgN 33 
                 +                   l +L+ LdL+g 
  CCE30438.1 285 K-------------------LEHLEILDLTGL 297
                 3...................555555555442 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00064
                 S---.E-S-HHH-TT--EEE-.-S- CS
       LRR_4  11 Nqlt.diplleklpnLkeLdLsgNn 34 
                 N l  +ip+   lpnLk+L + +N+
  CCE30438.1 358 NGLAsTIPS---LPNLKTLRIGDNP 379
                 666656666...*********7774 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.038
                 SS--EEE--SS-......--.E-S- CS
       LRR_4   1 pnLevLdLsnNq......lt.dipl 18 
                 pnL++L +++N       +   ip+
  CCE30438.1 368 PNLKTLRIGDNPqeepdqVDeVIPF 392
                 5666666666644555555555555 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 0.56
                 H-TT--EEE-. CS
       LRR_4  21 klpnLkeLdLs 31 
                 +l++L++++L 
  CCE30438.1 463 GLKSLQYISLE 473
                 5999***9993 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.075
                 -HHH-TT--EEE- CS
       LRR_4  18 lleklpnLkeLdL 30 
                 +l+ +pnL++L +
  CCE30438.1 596 FLATFPNLRTLKI 608
                 36679******98 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.041   1.5e+02      15      27 ..      25      37 ..      23      39 .. 0.92
   2 ?    5.5   0.0    0.0044        16      11      32 ..     102     123 ..      98     125 .. 0.89
   3 ?    0.2   0.1      0.21   7.5e+02       2      20 ..     127     145 ..     126     158 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.041
                T-HHHHHHHHHHH CS
       TPR_1 15 gkydeAleyyekA 27
                +++++A++++ +A
  CCE30438.1 25 KEHEQAVKFFTRA 37
                799*********9 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0044
                 HHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  11 yfklgkydeAleyyekALelnP 32 
                 +  lgk+d+A+   e  Lel P
  CCE30438.1 102 FEALGKLDQAINNAEWMLELAP 123
                 789****************999 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHTT-HHHH CS
       TPR_1   2 kalynlGnayfklgkydeA 20 
                 + + +lGn  + ++k + A
  CCE30438.1 127 DGYLRLGNFARLQKKDEYA 145
                 7899****99999986666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 5419.83
//
Query:       CCE30439.1  [L=393]
Description: uncharacterized protein CPUR_04287 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0015   18.8   0.7         27    5.4   0.0    5.3  6  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.012   15.4   0.2      0.023   14.5   0.2    1.4  1  ANTAR     ANTAR domain


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.3   1.1e+04      23      28 ..      10      15 ..       6      20 .. 0.52
   2 ?    0.3   0.0      0.12   1.1e+03      23      30 ..      70      77 ..      63      84 .. 0.71
   3 !    5.4   0.0     0.003        27      17      32 ..      89     104 ..      86     111 .. 0.77
   4 ?    2.4   0.0     0.025   2.3e+02      21      30 ..     121     130 ..     112     139 .. 0.74
   5 ?   -3.4   0.0       1.7   1.6e+04      17      26 ..     220     228 ..     215     233 .. 0.62
   6 ?    2.9   0.0     0.018   1.6e+02      21      31 ..     319     329 ..     312     338 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
                TT--EE CS
       LRR_4 23 pnLkeL 28
                p+L++L
  CCE30439.1 10 PSLEYL 15
                444444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.12
                TT--EEE- CS
       LRR_4 23 pnLkeLdL 30
                 +L++LdL
  CCE30439.1 70 SSLEHLDL 77
                45666666 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.003
                 S-.HHH-TT--EEE-.- CS
       LRR_4  17 pl.leklpnLkeLdLsg 32 
                 pl l  lpnLk+L +s+
  CCE30439.1  89 PLiL-HLPNLKTLRMSQ 104
                 5534.4********975 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.025
                 H-TT--EEE- CS
       LRR_4  21 klpnLkeLdL 30 
                  +pnL++L++
  CCE30439.1 121 AFPNLEQLSI 130
                 49******98 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 1.7
                 S-HHH-TT-- CS
       LRR_4  17 plleklpnLk 26 
                 + l+ + nL+
  CCE30439.1 220 QDLN-FQNLR 228
                 4566.77776 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.018
                 H-TT--EEE-. CS
       LRR_4  21 klpnLkeLdLs 31 
                  +pnL++L+++
  CCE30439.1 319 TFPNLRTLSIW 329
                 499*****996 PP

>> ANTAR  ANTAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   2.6e-06     0.023      29      50 ..     361     382 ..     354     383 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-06
                 HHHHHHHHHHHCTTTS-HHHHH CS
       ANTAR  29 deAfrlLrklSmdsnvklrevA 50 
                 deAf++Lr+++++++v+l e+ 
  CCE30439.1 361 DEAFAQLRQAARNQGVRLMEMS 382
                 9*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2922.29
//
Query:       CCE30440.1  [L=667]
Description: uncharacterized protein CPUR_04288 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-09   36.0   2.7    1.3e-06   28.2   0.6    3.0  2  F-box-like  F-box-like
     0.0016   18.3   0.3     0.0058   16.5   0.0    2.1  2  F-box       F-box domain
  ------ inclusion threshold ------
        0.1   13.5   1.2        1.1   10.3   0.3    3.1  3  TPR_14      Tetratricopeptide repeat
       0.18   12.3   2.4         35    5.0   0.0    4.9  6  LRR_4       Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0017       7.6      21      44 ..      42      65 ..      32      68 .. 0.89
   2 !   28.2   0.6   2.8e-10   1.3e-06       2      47 ..     182     229 ..     181     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0017
  F-box-like 21 LlrlalVCrrWrrvaldtplLWrr 44
                L r++++C+++  va+   +++r+
  CCE30440.1 42 LKRGRCTCKDFEKVASQQNSIYRE 65
                67899***********999**996 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 2.8e-10
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrlvl 47 
                 ++LP Ei  qIFs+L   +Ll +  V+++W+ +  ++  + LWr +++
  CCE30440.1 182 LYLPAEIVTQIFSCLACDELLHCLGVSKQWAYMLTSPiyAPLWRDMTF 229
                 58*************999***************988777778887765 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-06    0.0058       6      39 ..     184     217 ..     180     221 .. 0.93
   2 ?   -3.0   0.1       1.7   7.6e+03      15      23 ..     279     287 ..     279     289 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
                 S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT CS
       F-box   6 LPsevlrhILerLplsdllalrrVSkgwrilids 39 
                 LP e++ +I++ L   +ll +  VSk w  ++ s
  CCE30440.1 184 LPAEIVTQIFSCLACDELLHCLGVSKQWAYMLTS 217
                 99**************************999877 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.7
                 HHTS-HHHH CS
       F-box  15 LerLplsdl 23 
                 Le+L++ dl
  CCE30440.1 279 LEHLEFLDL 287
                 899999997 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.2   5.4e+03      15      32 ..      20      37 ..      10      44 .. 0.78
   2 ?   10.3   0.3   0.00024       1.1       2      42 ..      88     128 ..      87     130 .. 0.95
   3 ?   -2.0   0.0       2.1   9.5e+03      17      30 ..     509     522 ..     508     524 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
      TPR_14 15 GdpdeAiallrralalaP 32
                +++++A++l+ ra + +P
  CCE30440.1 20 ENYKRALTLFTRAMRSCP 37
                579999999999977776 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00024
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 eal ++a+ + a G +  A++ ++++l+laP+ ++ +l+l+
  CCE30440.1  88 EALDLRAATFVAMGLLGHAMKDAEWILELAPQLPDGYLRLG 128
                 79999********************************9998 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.1
      TPR_14  17 pdeAiallrralal 30 
                 p+eA++ll  a+++
  CCE30440.1 509 PKEARTLLSNAIQT 522
                 789*****999875 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.7   7.6e+03      19      28 ..      78      87 ..      74      93 .. 0.71
   2 ?   -1.3   0.1      0.74   3.3e+03      21      30 ..     278     287 ..     268     291 .. 0.69
   3 ?    5.0   0.0    0.0078        35      17      33 ..     356     372 ..     344     380 .. 0.81
   4 ?    3.4   0.0     0.026   1.2e+02       1      30 [.     362     396 ..     362     405 .. 0.72
   5 ?   -3.5   0.0       3.6   1.6e+04      22      30 ..     522     530 ..     516     533 .. 0.67
   6 ?    1.8   0.0      0.08   3.6e+02      21      30 ..     589     598 ..     582     605 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.7
                HHH-TT--EE CS
       LRR_4 19 leklpnLkeL 28
                ++k++nL+++
  CCE30440.1 78 FSKCDNLHHI 87
                6678899885 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.74
                 H-TT--EEE- CS
       LRR_4  21 klpnLkeLdL 30 
                 +l +L+ LdL
  CCE30440.1 278 SLEHLEFLDL 287
                 3667777776 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0078
                 S-HHH-TT--EEE-.-S CS
       LRR_4  17 plleklpnLkeLdLsgN 33 
                 pl+  lpnLk L +sg 
  CCE30440.1 356 PLIPHLPNLKILRMSGT 372
                 44335*********985 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.026
                 SS--EEE--SS.---E-S-....HH.H-TT--EEE- CS
       LRR_4   1 pnLevLdLsnN.qltdipl....le.klpnLkeLdL 30 
                 pnL++L  s++ ++  +p+    l+  +p+L++L +
  CCE30440.1 362 PNLKILRMSGTvRIN-VPFpmypLSiAFPSLEQLFI 396
                 799999999944455.66666663356999999987 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 3.6
                 -TT--EEE- CS
       LRR_4  22 lpnLkeLdL 30 
                  + L+++d+
  CCE30440.1 522 TKRLTSFDI 530
                 567888887 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.08
                 H-TT--EEE- CS
       LRR_4  21 klpnLkeLdL 30 
                  +pnL++L++
  CCE30440.1 589 TFPNLRTLSI 598
                 499*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4715.53
//
Query:       CCE30441.1  [L=979]
Description: related to argonaute like post-transcriptional gene silencing protein QDE-2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-77  261.3   0.0    1.5e-77  260.8   0.0    1.2  1  Piwi      Piwi domain
      2e-15   57.6   0.1    5.2e-15   56.3   0.1    1.7  1  ArgoN     N-terminal domain of argonaute
    4.5e-15   55.1   0.0    1.8e-14   53.1   0.0    2.1  2  ArgoL1    Argonaute linker 1 domain
    1.5e-12   47.5   0.0    2.9e-12   46.6   0.0    1.5  1  PAZ       PAZ domain
    6.6e-10   39.2   0.0    1.8e-09   37.7   0.0    1.8  1  ArgoL2    Argonaute linker 2 domain
    0.00011   22.3   0.3    0.00045   20.4   0.1    2.1  2  ArgoMid   Mid domain of argonaute


Domain annotation for each model (and alignments):
>> Piwi  Piwi domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.8   0.0   5.2e-81   1.5e-77       2     300 ..     602     906 ..     601     908 .. 0.96

  Alignments for each domain:
  == domain 1  score: 260.8 bits;  conditional E-value: 5.2e-81
                 EEEEECSSGHHCHHHHHHHHHHTCCCCEEEEEHHHHCTCCHHHHHHHHHHHHHHHHTT-BS.-EEESSSTTSSE........EEEEEEEEEECCCSCCC CS
        Piwi   2 ilvilpekkkdkyheikkyletdlgiisqcillktilkrqlkkqtltnvllkinvKlGgkn.vliveikleldv....sptliiGidishgtagtvdnp 95 
                 ++v++  k+++ y+ +kk  +  +gi sq++ ++ ++    + q+ +nv+lk+n+KlGg     ++  k + ++     pt++iG+dishg+ +  ++p
  CCE30441.1 602 LFVVVGHKNSPHYERLKKSADCRFGILSQVVNASFVKTN--TAQYHSNVCLKVNAKLGGATaRTMPPWKAQTTYfpkdRPTMMIGVDISHGAPDA-KTP 697
                 6789999*****************************888..68*****************999999999999999********************.*** PP

                 EEEEEEEEEETSSEEEEEEEEESSCCCCHHHH..HHHHHHHHHHHHHHTTTT-TTSEEEEEESS....S..S-HHHHHHHHHHHHHHHHHCTT.TEEEE CS
        Piwi  96 svaavvasldkensrylaevstqassqellek..lkeiikellrefkksskkkkperiivyRdGvseGqfkqvlnsEvkelkealkklkeqyq.pkltv 191
                 s aa+++ +d + +ry+a v+ +  + e+l+   + +++  l++ +k  ++   p++ii++RdGvse qf  v+++E++++k  l+k ++    pk+tv
  CCE30441.1 698 STAAMTMAVDRDALRYAAAVESNGYRVEMLTTtnVGSMFGPLFEYWKAGHDGAFPKHIIYFRDGVSEDQFAHVIDQEIRQIKLYLQKKEPALPiPKFTV 796
                 ****************************998755778****************************************************99888***** PP

                 EEEECSCS--EEESESTC.CCEETTTCEEETTEEEEEEEECCEEECCCCEEEEEEEEEEEEEEES..S-CCHHHHHHHHHCTGGTTTTSS-SS-HHHHH CS
        Piwi 192 ivvqkrhhtrfFasdkae.ksqnippGtvvdkkitlpeekdfylcshaglqgtvkPtkytvlvdeaklsadelqsltyklchmyqrstrsvsiPapvyy 289
                 iv++krh +rfF+++ +  ++ n++pGt+v+ ++t+p   dfyl+sh+ +qgt++P++y+v++de+++s+++lq+++y+ c+ y+rst++vs+ + vyy
  CCE30441.1 797 IVATKRHRIRFFPQKGKGdRNDNPLPGTLVEREVTHPFMWDFYLSSHVAIQGTARPVHYHVILDEMGVSVNDLQKMIYQQCYSYARSTTAVSLHPAVYY 895
                 ************998776699****************************************************************************** PP

                 HHHHHHHHHTC CS
        Piwi 290 AhklAkrvrnn 300
                 Ah++ +r+r +
  CCE30441.1 896 AHLAGARARAH 906
                 ****9999875 PP

>> ArgoN  N-terminal domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.1   1.7e-18   5.2e-15       4     138 .]      82     220 ..      79     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 1.7e-18
       ArgoN   4 klraNyFkvtsl.pdktlyhYdveitkkakrvglrriielll....eeykkselagkkpayDgrknlysakkLp...kefe.dl.paaeesakkepsek 92 
                  + +N +++t++  +k++++Ydv +++++ +v+  +++++++    ++++ + +  +k+++Dgrk+++++   +    +f+ dl +  +     +++++
  CCE30441.1  82 IVEVNQYRMTKFdFSKDIHQYDVIVSPDT-GVK-SALMKKIWqhesTKQALQRFMYQKWIFDGRKLAWAPCLVDegeIRFTvDLdE-GK-----KSPDG 172
                 589*******5546789*****9776443.666.77888888544233667788899******************99999999955.22.....23345 PP

       ArgoN  93 rrrksrtfkvtikfaksinlqsLleyl.rgkq.deasleaiqaLdivl 138
                  +r+ ++f + ++ ++++++++++ yl r+ q +++++ a++++d++l
  CCE30441.1 173 PSRNTNQFLIVLRATTQVQISAIRGYLdRKVQfNTSVQVALNFMDHLL 220
                 667788*********88**********445559999999*******97 PP

>> ArgoL1  Argonaute linker 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   5.9e-18   1.8e-14       1      52 []     230     287 ..     230     287 .. 0.85
   2 ?   -2.4   0.0       1.3   3.9e+03      39      49 ..     681     691 ..     676     691 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 5.9e-18
      ArgoL1   1 gvgrsFfsppskqrvdL.ggggleawrGfyqSvR......ptqggLllNvDvsntaFyk 52 
                 +++r+F++++++ ++ L  gg+le+++G+y+S+R       ++ gL+lN Dvsnt+F+k
  CCE30441.1 230 AIKRNFYPKDQQ-GRLLiHGGVLEVHKGTYASIRmshnlvQGGTGLALNADVSNTVFWK 287
                 59********44.44446888*************99996666666*************7 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
      ArgoL1  39 LllNvDvsnta 49 
                 +++ vD+s++a
  CCE30441.1 681 MMIGVDISHGA 691
                 8999*****97 PP

>> PAZ  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   9.8e-16   2.9e-12      17     136 ..     331     445 ..     317     446 .. 0.91

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 9.8e-16
                 S----HHCCCCTTBEEEETTTTS-...CEEEEEEEESS........--TTSEECCTTCT..CECCHHHHCCT---ST-TT--EEEEEES-SS----EEE CS
         PAZ  17 rkdrkkaaealkgliVmtwynnrn...ktyyvadittd........lapsstFpdkdkeneitfaeYfkkkYnieikdqdqplldvdkktesehssqkq 104
                  +d  k  + +++l++++ ++nr    k+y++ d+ +d        +a++ tF++++++  +t+a+Y+++kY+ ++k+  +pl++ ++           
  CCE30441.1 331 ASDAFKYLRRMRKLKFTIYHSNRVdsdKVYTILDFAFDakygfegaTAKTVTFDHDGTK--VTVADYYQQKYQANLKHAGLPLINAGR---------GG 418
                 5567788899**********9944667******************999********888..***************************.........89 PP

                 EE-CCCCEEESSBCCCCCTCCCHHHHCCCH.. CS
         PAZ 105 iLvpElcdihpisasqrykkkllpsilqrlnl 136
                 ++++E+  i    + qry++kl  +  q++ +
  CCE30441.1 419 FIPMEFAII---QPMQRYTFKL--NPEQTAAM 445
                 *********...**********..99999887 PP

>> ArgoL2  Argonaute linker 2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   6.2e-13   1.8e-09       1      46 [.     455     500 ..     455     501 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 6.2e-13
      ArgoL2   1 eRkksIlegvkvlgydddpylrafGisidpqmttVpGRvLppPtlk 46 
                 +R ++I++ v  l+++ dpyl+a+G++ d+ +t++++R+Lp+P ++
  CCE30441.1 455 QRREDIERNVAGLQLSSDPYLKAYGVEFDSTFTKTEARILPAPVVH 500
                 799*****9999*******************************987 PP

>> ArgoMid  Mid domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.5e-07   0.00045       4      54 ..     511     560 ..     510     566 .. 0.90
   2 ?   -4.4   0.0         6   1.8e+04      39      52 ..     865     878 ..     864     880 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.5e-07
     ArgoMid   4 nGsWdmrgkqFlepk.akikkWAilcfasqrkvkenkledfikqlvkiskdv 54 
                 +G+Wd+rgk+F + + +++++W +++++  ++v+  +l+ f+k+++  +  +
  CCE30441.1 511 SGRWDLRGKKFWKHNtTPLENWGFIVMD--NCVNFPQLQAFAKTFRAAYLGH 560
                 69**********999899********88..9*************99877655 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 6
     ArgoMid  39 kledfikqlvkisk 52 
                 +++d++k++ +++ 
  CCE30441.1 865 SVNDLQKMIYQQCY 878
                 58999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (979 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 6197.08
//
Query:       CCE30442.1  [L=743]
Description: uncharacterized protein CPUR_04290 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-10   37.9   0.5        1.1    9.1   0.0    6.4  6  PUF       Pumilio-family RNA binding repeat


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0017        30       3      32 ..     126     155 ..     124     158 .. 0.85
   2 !    8.8   0.0   7.7e-05       1.4       4      25 ..     163     184 ..     160     193 .. 0.84
   3 !    3.0   0.0    0.0053        96       2      25 ..     225     248 ..     224     256 .. 0.79
   4 !    3.6   0.0    0.0033        59       6      24 ..     313     331 ..     310     335 .. 0.89
   5 !    9.1   0.0   6.1e-05       1.1       5      33 ..     391     419 ..     388     421 .. 0.83
   6 ?   -0.4   0.0     0.063   1.1e+03       2      15 ..     626     639 ..     625     642 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0017
                 GGGHHHHHTSTTHHHHHHHHHHHSCHHHHH CS
         PUF   3 kgnlvqLstdqyGnyvvQkllehateeqkk 32 
                 +g+ ++L++ q  ++++++l++ ++++qkk
  CCE30442.1 126 QGKELKLASSQSCSRLMERLIQLSSTSQKK 155
                 5778899999999**********9999987 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 7.7e-05
                 GGHHHHHTSTTHHHHHHHHHHH CS
         PUF   4 gnlvqLstdqyGnyvvQklleh 25 
                  ++++L++++++++ ++ l+ +
  CCE30442.1 163 SHFLSLVQHRFASHCCEALFLR 184
                 599**************99976 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.0053
                 HGGGHHHHHTSTTHHHHHHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQklleh 25 
                 ++gnl+ L td+++++ ++ ll +
  CCE30442.1 225 LEGNLTFLLTDRFASHTLRVLLLV 248
                 6788999*********88877766 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.0033
                 HHHHHTSTTHHHHHHHHHH CS
         PUF   6 lvqLstdqyGnyvvQklle 24 
                 l +L+++  Gn  +Q lle
  CCE30442.1 313 LRVLAKHAIGNPTLQLLLE 331
                 678***************9 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 6.1e-05
                 GHHHHHTSTTHHHHHHHHHHHSCHHHHHH CS
         PUF   5 nlvqLstdqyGnyvvQkllehateeqkkl 33 
                 ++  ++ dq G++++++l +h++ +  k+
  CCE30442.1 391 FINGMIYDQIGSRLIETLVQHCPGKVFKQ 419
                 6667788**************99887776 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.063
                 HGGGHHHHHTSTTH CS
         PUF   2 ikgnlvqLstdqyG 15 
                 ++++  +Lst q+G
  CCE30442.1 626 LSPHMGSLSTSQFG 639
                 5788889******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1581  (0.0881812); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 4733.31
//
Query:       CCE30443.1  [L=512]
Description: related to glutamic acid decarboxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-73  245.6   0.0    2.8e-72  243.5   0.0    1.7  2  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
    4.3e-07   29.2   0.0    6.2e-07   28.7   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
    4.3e-05   22.9   0.0    5.6e-05   22.6   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
       0.17   10.6   0.0       0.25   10.0   0.0    1.2  1  SepSecS          O-phosphoseryl-tRNA(Sec) selenium transferas


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.094   4.2e+02      15      40 ..      23      48 ..      14      55 .. 0.81
   2 !  243.5   0.0   6.3e-76   2.8e-72       1     372 [.      75     441 ..      75     443 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.094
                   SHH.HHHHHHHHHHCTGGGS--TTST CS
  Pyridoxal_deC 15 kaesleqilediekilapgvttwhsp 40
                   +ae+l+++l  ++++++p+v+  ++ 
     CCE30443.1 23 RAEELDDLLMAVRDLIVPFVKAADDA 48
                   6778****************998875 PP

  == domain 2  score: 243.5 bits;  conditional E-value: 6.3e-76
                    TTTTGGGSCSSHHSSHH.HHHHHHHHHHCTGGGS--TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--G CS
  Pyridoxal_deC   1 PeylkrlldeaapekaesleqilediekilapgvttwhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpe 96 
                    Pe+l   ld ++p++ +  + +l+ +++il++ v+tw++  ++kl+   n+  ++++d++ +  n+n   ++ sPalt +e ++   la+ +g+  
     CCE30443.1  75 PEKLNVSLDLSLPDEGQGRKGLLQAVADILKYSVNTWDQGFMDKLYA-SNNPVGVISDIMLSVLNTNLHVYQVSPALTVIEKRTARALAHKFGFC- 168
                    88888999******************************999999888.99999****************************************99. PP

                    GGTCCT-EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-E...EEEE--BTTTBB-HHHHHHHH CS
  Pyridoxal_deC  97 eflekegggvlqvgssestllallAartkvikemkekgkelkeaeildklvlytsdqahssvekaalvlgvk...lrvipldengklrgaalekai 189
                       +  +gg+  +g+s s+l +l+ ar+   +  k +g+           v++ts++ h+svek a ++g++   +  +p+d++g++r++al++++
     CCE30443.1 169 ---GPRAGGITCQGGSSSNLTSLVMARNILYPDTKVHGNG------KHDFVVFTSADGHYSVEKSAMICGFGsanVWKVPVDKEGSMRADALRELV 255
                    ...4459*******************************99......5679*********************999999******************* PP

                    HHHHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHHCT-EEEEE-TTGGGGGGSGGGGGGGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGC CS
  Pyridoxal_deC 190 eedkekGlipffvvatlGttvlgaFddlkelgdicekydlwlHvDAAyaGsaficpeirhllkgieradSitvnphKlllvlldcsalivkdkeal 285
                     ++k+ G +p++v+ t+G+tv g++d   e+  ic++ +lw+H+D  ++G +  + + + +++g  +ad it+nphK++ ++  cs l+  d +  
     CCE30443.1 256 IKAKADGKTPLYVNTTAGSTVRGSYDPFPEISAICKEFGLWMHIDGSWGGPVVFSAKLKSKVNGSHLADTITINPHKMMNAPTTCSFLLGPDMNLF 351
                    ************************************************************************************************ PP

                    HHHH-EEECCCT.TT.TTTSEECCCGSSSSSGHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECS..TTBSSEEEE CS
  Pyridoxal_deC 286 qqalqleaeYLehed.sdvaadlgtkaiplsrrvrilklwfvlralGveglqnqirksvelakyleklirkderfeiva..evelglVcF 372
                    ++a++ ea YL+h++  + + dl + +++++rr ++lk+ + +  +G  g+++qi++ +++a  l+  ++k+++f +v+   + +  VcF
     CCE30443.1 352 NKANSTEAGYLFHTNpDQDTWDLADLTLQCGRRGDSLKVALAWLYYGADGFERQIDHAFDMASCLYTSVEKTGHFVMVTadPPPCLQVCF 441
                    ***************766689*********************************************************986678999999 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   1.4e-10   6.2e-07      87     215 ..     206     347 ..     178     380 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.4e-10
                  TTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH-......-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-T. CS
  Aminotran_5  87 pgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekll......nektklvaithvsnvtGtiqpveeigklakkkgalvlvDaa. 177
                  + d +v t+a+ h  +   ++++ +  a+v ++p+d+eg+++ d+l++l+       +++ +v  t+ s+v G  +p++ei +++k+ g ++++D++ 
   CCE30443.1 206 KHDFVVFTSADGHYSVEKSAMICGFGSANVWKVPVDKEGSMRADALRELVikakadGKTPLYVNTTAGSTVRGSYDPFPEISAICKEFGLWMHIDGSw 303
                  455566666665555669999*************************9998899886678889**********************************83 PP

                  ......TTTTTS---HHHHTESEEEEETTT.TTSSTT-EEEEEEH CS
  Aminotran_5 178 ......qavghipidvkklgvDflafsghK.llgPtGiGvlyvrk 215
                        +a ++ +++ + l +D +++  hK +++Pt  ++l + +
   CCE30443.1 304 ggpvvfSAKLKSKVNGSHL-ADTITINPHKmMNAPTTCSFLLGPD 347
                  3322223333444444443.6899999999888888888887765 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.3e-08   5.6e-05      17     169 ..     132     302 ..     121     428 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.3e-08
                      HH.HCS----CCCT--HHHHHHHHHHHHHTT-SEEEE................ES-HHHHHHHHH...HHH-.-TTEEEEEETT.-HHHHSSTT CS
  Beta_elim_lyase  17 aq.aaamlGdesYgedktvnrLedavaelfgkeaalf................vpqGtaAnsill...kill.qrgeevivtep.ahihfdetg 88 
                       + + +++   +Y+ ++   ++e+++a+++ ++ ++                 +++  +A +il+   k++   +++ v++t+  +h+      
       CCE30443.1 132 IMlSVLNTNLHVYQVSPALTVIEKRTARALAHKFGFCgpraggitcqggsssnLTSLVMARNILYpdtKVHGnGKHDFVVFTSAdGHYSVEKSA 225
                      5555555555667777777777777776555555444445555543333333333334444444477778874444445555445888888889 PP

                      HHHHCC--EEEEE-EBTTTBE-HHHHHH.HS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEET CS
  Beta_elim_lyase  89 aiaelagvklrdlknkeaGkmdleklea.aikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgA 169
                       i  ++++++ +++ +++G m +++l++ +ik++ +   k++l + t++  t+ G   s +   e++ai+k+ g+ +h+Dg 
       CCE30443.1 226 MICGFGSANVWKVPVDKEGSMRADALRElVIKAKAD--GKTPLYVNTTAGSTVRG---SYDPFPEISAICKEFGLWMHIDGS 302
                      99999***********************55555444..77777666666665444...7899999***************97 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   5.5e-05      0.25     102     194 ..     208     303 ..     198     321 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 5.5e-05
                 -CCEEEEEETC.HHHHHHHCTT-EEEEE-EEECTTEEEEHHHHHHHHH..HCCTCCCEEEEEECSSTTTTB----HHHHHHHHHCCT--EEEEGCC CS
     SepSecS 102 kkviwvridek.SslkavelaGleialvekvlegDelitdvedveeii..ekkreevilavlstlsffaprspDdvkeiakiCaeydvPhlvNgAY 194
                 + v++  +d + S  k++   G+  a v kv    e     ++  e +   k  + ++l v +t       s D+ +ei++iC+e+++   + g +
  CCE30443.1 208 DFVVFTSADGHySVEKSAMICGFGSANVWKVPVDKEGSMRADALRELVikAKADGKTPLYVNTTAGSTVRGSYDPFPEISAICKEFGLWMHIDGSW 303
                 5688888886659999********9999887655555555555555554466778889999999999999999*************9877666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3758.14
//
Query:       CCE30444.1  [L=660]
Description: uncharacterized protein CPUR_04292 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-09   35.0   4.0    1.3e-06   28.2   1.4    2.8  2  F-box-like  F-box-like
     0.0047   16.8   0.0      0.016   15.1   0.0    1.9  1  F-box       F-box domain
  ------ inclusion threshold ------
      0.019   15.8   0.8       0.13   13.2   0.4    2.6  3  TPR_14      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0013       7.6      21      44 ..      42      65 ..      26      68 .. 0.86
   2 !   28.2   1.4   2.1e-10   1.3e-06       2      47 ..     182     229 ..     181     230 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0013
  F-box-like 21 LlrlalVCrrWrrvaldtplLWrr 44
                L r++++C+++  va+   +++r+
  CCE30444.1 42 LERGRCTCKDFEKVASQQNSIYRE 65
                678899**********999**996 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 2.1e-10
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrlvl 47 
                 ++LP Ei  qIFs+L   +Ll +  V+++W+    ++  ++LWr+l++
  CCE30444.1 182 LYLPAEIVTQIFSCLACDELLHCLGVSKQWAYTLTSPihARLWRNLTF 229
                 58*************999************99997766799***9987 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.6e-06     0.016       6      38 ..     184     216 ..     180     219 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-06
                 S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT CS
       F-box   6 LPsevlrhILerLplsdllalrrVSkgwrilid 38 
                 LP e++ +I++ L   +ll +  VSk w   + 
  CCE30444.1 184 LPAEIVTQIFSCLACDELLHCLGVSKQWAYTLT 216
                 99**************************87665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         3   1.8e+04      13      27 ..      18      32 ..       9      38 .. 0.65
   2 ?   13.2   0.4   2.1e-05      0.13       2      42 ..      88     128 ..      87     130 .. 0.95
   3 ?   -2.0   0.0       1.6   9.4e+03      17      30 ..     502     515 ..     501     517 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3
      TPR_14 13 alGdpdeAiallrra 27
                  +++++A++++  a
  CCE30444.1 18 KTENYKRALTVFTSA 32
                456788898888766 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.1e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 eal ++a+ + a G +d A++ ++++l+laP+ ++ +l+l+
  CCE30444.1  88 EALDLRAATFVAMGLLDHAMKDAEWILELAPQLPDGYLRLG 128
                 7999*********************************9998 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.6
      TPR_14  17 pdeAiallrralal 30 
                 p+eA++ll  a+++
  CCE30444.1 502 PKEARTLLSNAIQT 515
                 789*****999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4815.16
//
Query:       CCE30445.1  [L=248]
Description: uncharacterized protein CPUR_04293 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00098   19.0   0.0      0.014   15.3   0.0    2.5  2  Exo_endo_phos_2  Endonuclease-reverse transcriptase
  ------ inclusion threshold ------
      0.029   14.5   0.4      0.068   13.3   0.3    1.6  2  SNAD4            Secreted Novel AID/APOBEC-like Deaminase 4
      0.092   12.2   1.3       0.25   10.8   0.2    2.2  2  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.089   5.3e+02      81      98 ..     149     166 ..     124     183 .. 0.62
   2 !   15.3   0.0   2.3e-06     0.014       2      44 ..     207     247 ..     206     248 .] 0.92

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.089
  Exo_endo_phos_2  81 fkssngsstiDltltsdn 98 
                      +++++++++iD++l  + 
       CCE30445.1 149 WNTRKRKQLIDIVLNFNV 166
                      333333566666654333 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.3e-06
  Exo_endo_phos_2   2 liisvYippsdelenlestlekllselkspkiiilGDfNakhp 44 
                       i+svY p      + +  +++l+s + +++ i++GDfN +hp
       CCE30445.1 207 DIFSVYSPTYG--GQWTIPIKELMSMPARSRSIFVGDFNQHHP 247
                      6999**99999..9999999*******999************8 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   1.1e-05     0.068      50     108 ..     119     176 ..     108     181 .. 0.80
   2 ?   -1.2   0.0      0.37   2.2e+03      19      52 ..     178     214 ..     164     216 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
       SNAD4  50 wsPCae.CaekiaeflaehpnvtLeifaarLyfweeenregLrsLaka.gvkvkimkleef 108
                  +PC + C ++ ++   eh++++L i    Ly w++++r++L ++  +  v+++++ ++e 
  CCE30445.1 119 PTPCLReCLRECIRHADEHSTLKLMI--RVLY-WNTRKRKQLIDIVLNfNVELDVIAIQEV 176
                 58**655*******999999666665..4588.9999999999887665788888888776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.37
       SNAD4  19 nkke...haEllflekikseldpsqeyrvtwylswsP 52 
                 n+++    aE ++ ++ +   d +++  v ++  +sP
  CCE30445.1 178 NENQisyGAEGCLHSQATRAWDVDRKEGVDIFSVYSP 214
                 3333456799999999988777777888888888888 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.39   2.3e+03     191     233 .]      51      80 ..      26      96 .. 0.65
   2 ?   10.8   0.2   4.2e-05      0.25       3      52 ..     149     182 ..     147     247 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.39
                    TTTTTEB-BEEEEEEC.HHHCCEEEEEEECCHHEECTSSCSSSB CS
                    xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 191 vtraggsrlDrilasp.alalfrsgvlppplalvrrealtlSDH 233
                      +a+  + D +l+ + +                 r+  t++DH
     CCE30445.1  51 AHPAWSRTPDFVLWPThN--------------GPKRDRPTPTDH 80 
                    444555555555555322..............222233444444 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4.2e-05
                    EEESTGCHHHHTHHHHHHHHHHHHHHCTT..SEEEEEEEBSCTCHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   3 wNvngqaspalgssrrsdrladlltayda..DvlgLQEvdddelsripllla 52 
                    wN+              ++l d++ +++   Dv+++QEv++         ++
     CCE30445.1 149 WNTRK-----------RKQLIDIVLNFNVelDVIAIQEVNNEN-------QI 182
                    66666...........999********9999*******66554.......33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1757.33
//
Query:       CCE30446.1  [L=330]
Description: uncharacterized protein CPUR_04294 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0021   18.7   0.6     0.0042   17.7   0.6    1.5  1  FAR1      FAR1 DNA-binding domain
  ------ inclusion threshold ------
        2.8    8.0   6.3         16    5.6   0.1    2.0  2  FlxA      FlxA-like protein


Domain annotation for each model (and alignments):
>> FAR1  FAR1 DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.6   4.7e-07    0.0042       2      87 ..     136     222 ..     135     225 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.7e-07
        FAR1   2 fYkeYakrvGFs.vrvkksrrsrkdgeiirrk..fvCskeGfkkekkktkeakrerastrtgCkAmlvvkkekegkwvv.tklvkeHNHe 87 
                 f +++a+  G + v+++ s+r + +g+ i+ +  + C + G++ ++      +r+ ++++t+C   +    +k+++w+  +k +  HNH+
  CCE30446.1 136 FLQSWARANGAAfVKKSGSNRREFNGTKIATHwlLLCDRGGSRPSRGLG---HRQTSTQKTDCPVRVCASATKRNNWQWtYKASGVHNHP 222
                 667778777755134444444444444444432279******9999888...8899999**************999985268999****7 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   3.1     0.012     1e+02      52      74 ..      15      37 ..      11      44 .. 0.85
   2 ?    5.6   0.1    0.0017        16      16      39 ..      43      66 ..      38      72 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.012
        FlxA 52 qliqaQIqqlqaQIaqlqqqqae 74
                q+i +Q+q+ q QI +l+++ a 
  CCE30446.1 15 QQILNQLQVFQDQILRLERERAA 37
                88999************999876 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0017
        FlxA 16 asqiasLqkQiknlqkqLkelses 39
                ++qi +Lq+Q++nl   L++ + s
  CCE30446.1 43 ENQIGALQQQVANLAAGLRSFTPS 66
                678888888888888777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2327.50
//
Query:       CCE30447.1  [L=410]
Description: uncharacterized protein CPUR_04295 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3025.49
//
Query:       CCE30448.1  [L=975]
Description: related to argonaute like post-transcriptional gene silencing protein QDE-2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-77  260.3   0.0    3.1e-77  259.8   0.0    1.2  1  Piwi      Piwi domain
    3.2e-15   56.9   0.3    7.6e-15   55.7   0.3    1.7  1  ArgoN     N-terminal domain of argonaute
      2e-14   53.0   0.1      1e-13   50.7   0.0    2.3  3  ArgoL1    Argonaute linker 1 domain
    2.9e-13   49.8   0.0    5.6e-13   48.9   0.0    1.4  1  PAZ       PAZ domain
    8.7e-10   38.8   0.0    1.8e-09   37.8   0.0    1.6  1  ArgoL2    Argonaute linker 2 domain
    9.2e-05   22.6   0.4    0.00033   20.8   0.4    1.9  1  ArgoMid   Mid domain of argonaute


Domain annotation for each model (and alignments):
>> Piwi  Piwi domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.8   0.0     1e-80   3.1e-77       2     300 ..     596     900 ..     595     902 .. 0.93

  Alignments for each domain:
  == domain 1  score: 259.8 bits;  conditional E-value: 1e-80
                 EEEEECSSGHHCHHHHHHHHHHTCCCCEEEEEHHHHCTCCHHHHHHHHHHHHHHHHTT-BS.-EEESSSTTSSE........EEEEEEEEEECCCSCCC CS
        Piwi   2 ilvilpekkkdkyheikkyletdlgiisqcillktilkrqlkkqtltnvllkinvKlGgkn.vliveikleldv....sptliiGidishgtagtvdnp 95 
                 ++v++  k+++ y+ +kk  +  +gi sq++ ++ +     + q+ +nv+lk+n+KlGg     ++  k + ++     pt++iG+dishg+ +  ++p
  CCE30448.1 596 LFVVVGHKNSPHYERLKKSADCRFGILSQVVNASAVATN--NGQYHSNVCLKVNAKLGGATaRTMPPWKAQTTYfpkdRPTMMIGVDISHGAPDG-KTP 691
                 6789999*****************************999..57*****************999999999999999********************.*** PP

                 EEEEEEEEEETSSEEEEEEEEESSCCCCHHHH.HHHHHHHHHHHH.HHTTTT-TTSEEEEEESS....S..S-HHHHHHHHHHHHHHHHHC.TTTEEEE CS
        Piwi  96 svaavvasldkensrylaevstqassqellek.lkeiikellref.kksskkkkperiivyRdGvseGqfkqvlnsEvkelkealkklkeq.yqpkltv 191
                 s aa+++ +d + +ry+a v+ +  + e+l+    +++   l+++    ++   p++ii++RdGvse qf  v+++E++++k  l++  +   +pk+tv
  CCE30448.1 692 STAAMTMAVDRDALRYAAVVESNGYRVEMLTAaNVHFMIGTLSKYwMAGHDGAFPKHIIYFRDGVSEDQFAHVIDQEIRQIKLYLREKAPAlPMPKFTV 790
                 ******************************995334555555555166788889********************************88776157***** PP

                 EEEECSCS--EEESESTC.CCEETTTCEEETTEEEEEEEECCEEECCCCEEEEEEEEEEEEEEES..S-CCHHHHHHHHHCTGGTTTTSS-SS-HHHHH CS
        Piwi 192 ivvqkrhhtrfFasdkae.ksqnippGtvvdkkitlpeekdfylcshaglqgtvkPtkytvlvdeaklsadelqsltyklchmyqrstrsvsiPapvyy 289
                 iv++krhh+rfF+++ +  ++ n++pGt+v+ ++t+p   dfyl+sh+ +qgt++P++y+v++de+++++++lq+++y+ c+ y+rst++vs+ + vyy
  CCE30448.1 791 IVATKRHHIRFFPQKGKGdRNDNPLPGTLVEREVTHPFMWDFYLSSHVAIQGTARPVHYHVILDEMGVPVNDLQKMIYQQCYSYARSTTPVSLHPAVYY 889
                 ************998776699****************************************************************************** PP

                 HHHHHHHHHTC CS
        Piwi 290 AhklAkrvrnn 300
                 Ah++ +r+r +
  CCE30448.1 890 AHLAGARARAH 900
                 ****9999875 PP

>> ArgoN  N-terminal domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.3   2.5e-18   7.6e-15       4     138 .]      76     214 ..      73     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 2.5e-18
       ArgoN   4 klraNyFkvtsl.pdktlyhYdveitkkakrvglrriielll....eeykkselagkkpayDgrknlysakkLp...kefe.dl.paaeesakkepsek 92 
                  + +N +++t++  +k++++Ydv +++++ +v+  +++++++    ++++ +++  +k+++Dgrk+++++   +    +f+ dl +  ++    +++++
  CCE30448.1  76 MVEVNQYRMTKFdFSKDIHQYDVIVSPDT-GVK-SALMKKIWqhesTKQALQKYMYQKWIFDGRKLAWAPCLVDkseIRFTvDLdE--GK----KSPDR 166
                 689*******5546789*****9776443.566.77888887543222555556688******************88889999954..32....22335 PP

       ArgoN  93 rrrksrtfkvtikfaksinlqsLleyl.rgkq.deasleaiqaLdivl 138
                  +r+ ++f + ++ + ++++++++ yl r+ q +++++ a++++d++l
  CCE30448.1 167 PSRNTNQFFIVLRATAQVQISAIRGYLdRKVQfNTSVQVALNFMDHLL 214
                 567788*********77**********445559999999*******97 PP

>> ArgoL1  Argonaute linker 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   3.4e-17     1e-13       1      51 [.     224     280 ..     224     281 .. 0.85
   2 ?   -4.0   0.0         4   1.2e+04      37      43 ..     561     567 ..     554     567 .. 0.84
   3 ?   -2.3   0.0       1.2   3.6e+03      39      49 ..     675     685 ..     669     685 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 3.4e-17
      ArgoL1   1 gvgrsFfsppskqrvdL..ggggleawrGfyqSvR......ptqggLllNvDvsntaFy 51 
                 +++r+F++++ ++  +L  +g++le+++G+y+S+R       ++ gL+lN Dvsnt+F+
  CCE30448.1 224 AIKRNFYPQG-QK-GKLlmDGNVLEVHKGTYASIRmshnlvQGGTGLALNADVSNTVFW 280
                 59******99.43.44447999*************99996666666************* PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4
      ArgoL1  37 ggLllNv 43 
                 +gLllNv
  CCE30448.1 561 DGLLLNV 567
                 69****8 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.2
      ArgoL1  39 LllNvDvsnta 49 
                 +++ vD+s++a
  CCE30448.1 675 MMIGVDISHGA 685
                 8999*****97 PP

>> PAZ  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   1.9e-16   5.6e-13      17     136 ..     325     439 ..     311     440 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.9e-16
                 S----HHCCCCTTBEEEETTTTS-...CEEEEEEEESS........--TTSEECCTTCT..CECCHHHHCCT---ST-TT--EEEEEES-SS----EEE CS
         PAZ  17 rkdrkkaaealkgliVmtwynnrn...ktyyvadittd........lapsstFpdkdkeneitfaeYfkkkYnieikdqdqplldvdkktesehssqkq 104
                  +d  k  +++++l++++ ++nr    k+y++ d+ +d        +a+  tF++++++  +t+a+Y+++kY+ ++k+  +pl++ +k           
  CCE30448.1 325 ASDAFKYMRKMRKLKFTIHHSNRVasdKVYTILDFAFDakhgaegaTAKVVTFDQDGTK--VTVADYYQQKYKANLKNAGLPLINAGK---------GG 412
                 566778899***********9954667******************999999*****888..***************************.........89 PP

                 EE-CCCCEEESSBCCCCCTCCCHHHHCCCH.. CS
         PAZ 105 iLvpElcdihpisasqrykkkllpsilqrlnl 136
                 ++++E+  i    + qry++kl  +  q++ +
  CCE30448.1 413 FIPMEFAII---QPMQRYTFKL--NPEQTAAM 439
                 *********...**********..99999887 PP

>> ArgoL2  Argonaute linker 2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   6.1e-13   1.8e-09       1      46 [.     449     494 ..     449     495 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 6.1e-13
      ArgoL2   1 eRkksIlegvkvlgydddpylrafGisidpqmttVpGRvLppPtlk 46 
                 +R ++I++ v  l+++ dpyl+a+G++ d+ +t++++R+Lp+P ++
  CCE30448.1 449 QRREDIERNVAGLQLSSDPYLKAYGVEFDSTFTKTEARILPAPVVH 494
                 799*****9999*******************************987 PP

>> ArgoMid  Mid domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.4   1.1e-07   0.00033       4      52 ..     505     552 ..     503     557 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.1e-07
     ArgoMid   4 nGsWdmrgkqFlepk.akikkWAilcfasqrkvkenkledfikqlvkisk 52 
                 +G+Wd+rgk+F +++ a++k+W +++++  ++v+  +l+ f+k+++ +  
  CCE30448.1 505 SGRWDLRGKKFWKQNfAPLKNWGFIVMD--NCVNFPQLQAFAKTFRTTFL 552
                 69************99**********88..9*************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (975 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 6657.58
//
Query:       CCE30449.1  [L=987]
Description: related to RNA14-component of pre-mRNA 3`-end processing factor CF I [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-83  281.3   4.3    5.9e-82  276.0   0.0    3.8  4  Suf       Suppressor of forked protein (Suf)
    0.00019   22.0   0.5       0.12   13.3   0.1    5.0  5  TPR_14    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.79   10.0   4.4        3.3    8.0   0.0    3.5  5  HrpJ      HrpJ-like domain


Domain annotation for each model (and alignments):
>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.6       1.7     1e+04     202     230 ..      66      93 ..      22     124 .. 0.53
   2 !    3.5   0.0    0.0096        58       4      88 ..     173     255 ..     172     297 .. 0.61
   3 ?   -3.6   0.0       1.5   8.8e+03      88     120 ..     313     343 ..     307     347 .. 0.70
   4 !  276.0   0.0   9.9e-86   5.9e-82       1     294 [.     592     888 ..     592     889 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.7
         Suf 202 lesedssvkkPdklqmvespkkgaagrrl 230
                 ++ ++s+ + Pdk++ +++ +k+a++++ 
  CCE30449.1  66 VAVDNSP-PTPDKSAPGTTAQKSANKPKM 93 
                 2222222.455555555555555555443 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0096
         Suf   4 wikymrasrRaeGikgaRkvFkkARkkprltyevyvasAllEyyiskdkkvAtkIFelGlKkFpedeefvlkYldyLislnddnn 88 
                 w  ++   +R ++i+  R  +++  +      +++v+   +E   ++  + A + F + l + p+ +     Yl+y  + nd +n
  CCE30449.1 173 WLSLVADYKRRSRIEDLRRLYNRFLEVFPQAGDIWVEWIEMELNLDNFVD-AEQLFGRCLMTVPNVKL-WTSYLNYIRRRNDLTN 255
                 77777777777777777777777777777777777777777777444444.77788777777776544.4578888888887766 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1.5
         Suf  88 naRvlfekvvsklskekeakelykkfleyestf 120
                 ++R  + ++++ + +    + l+k + ++e   
  CCE30449.1 313 QLRKAYHRAINVPISTV--NTLWKEYDQFEMGL 343
                 56666666666666555..89999999999765 PP

  == domain 4  score: 276.0 bits;  conditional E-value: 9.9e-86
         Suf   1 tlvwikymrasrRaeG.....ikgaRkvFkkARkkprltyevyvasAllEyyiskdkkvAtkIFelGlKkFpedeefvlkYldyLislnddnnaRvlfe 94 
                 ++vwi+  ra+rR++G       g RkvF++AR+++rlt++vyva+AllE  ++kd+  + kIFe+G+++Fp+de f+++Yl+yL+s +d++naRv+fe
  CCE30449.1 592 SYVWIAMARAMRRIQGkgnqtEGGLRKVFTDARQRGRLTSDVYVAVALLESIVYKDAV-GAKIFERGARLFPNDEGFMIEYLKYLHSKDDTTNARVVFE 689
                 79***************9999999********************************98.**************************************** PP

         Suf  95 kvvsklskeke....akelykkfleyestfgdlssilklekRmeelfpedskleqfvdRYklknldpikkrelksetkqeeekallqkkee........ 181
                 ++v++l +++e    a++ly++f++yes++g+l++i kle+Rm+elfp+d+kl++f++RY+ ++++p+++  ++s++ q+++k++  + ++        
  CCE30449.1 690 TCVNRLVSKPEtlhkARPLYAYFHKYESQYGELAQISKLEARMAELFPDDPKLNNFTARYSSDSFNPVAVPIIISKAVQMRPKQMAPAIAQptlaress 788
                 ***********************************************************************************7765555566665555 PP

         Suf 182 ..qaaslees.........kvpqaqeskkrklesedssvkkPdklqmvespkkgaagrrleqqrksessksaeaasksqkalqqqpaplprsivallsv 269
                          +         +  +a+ s+kr+  ++++++++P++++++ sp kgaagrrl+qqr++++                    l+r+i++ll +
  CCE30449.1 789 ipP------PtrheqsprpHFVRATASPKRPFGMDEDDLNPPKRVARGVSPLKGAAGRRLDQQRRNQA------------------SALHRDITFLLGI 863
                 550......255555555599***************99*********************999988733..................3489********* PP

         Suf 270 LPsaqsfdgpvfnpeklvellrete 294
                 LP+++++d++++np  l++llr+t+
  CCE30449.1 864 LPPSHTYDAQRLNPAGLTTLLRDTP 888
                 **********************986 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1     2e-05      0.12       2      43 ..     171     212 ..     170     213 .. 0.94
   2 ?    1.7   0.0       0.1   6.3e+02       4      33 ..     207     236 ..     206     244 .. 0.82
   3 ?   -1.1   0.0      0.81   4.8e+03       3      38 ..     446     485 ..     444     490 .. 0.61
   4 ?    0.4   0.0      0.28   1.7e+03      21      41 ..     651     671 ..     647     673 .. 0.85
   5 ?   -1.1   0.0      0.83   4.9e+03      13      38 ..     718     743 ..     705     748 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +a+l l++ + ++ + ++ ++l++r l+ +P+  ++w ++ +
  CCE30449.1 171 DAWLSLVADYKRRSRIEDLRRLYNRFLEVFPQAGDIWVEWIE 212
                 79***********************************99875 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.1
      TPR_14   4 llalaeallalGdpdeAiallrralalaPd 33 
                 + +  e +l+l+++ +A++l+ r+l + P+
  CCE30449.1 207 WVEWIEMELNLDNFVDAEQLFGRCLMTVPN 236
                 6667788999**************998887 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.81
      TPR_14   3 allalaeallal..Gdpde..AiallrralalaPddaeaw 38 
                 ++ ++a+ ++++  ++ d+   i++l++ + ++P++  + 
  CCE30449.1 446 MWVDAAAWCFENdiRENDKslGIEMLQQGIIANPESVLLA 485
                 5555555554432223333348999999999999987765 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.28
      TPR_14  21 iallrralalaPddaeawlll 41 
                 +++++r  +l+P+d+ + +++
  CCE30449.1 651 AKIFERGARLFPNDEGFMIEY 671
                 689***********9887776 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.83
      TPR_14  13 alGdpdeAiallrralalaPddaeaw 38 
                 + G++++  +l  r+ +l+Pdd+ ++
  CCE30449.1 718 QYGELAQISKLEARMAELFPDDPKLN 743
                 45666666665567789999999765 PP

>> HrpJ  HrpJ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00055       3.3     135     165 ..     183     213 ..     174     214 .. 0.89
   2 ?    1.5   0.0     0.054   3.2e+02     133     150 ..     306     323 ..     302     335 .. 0.79
   3 ?   -2.2   0.1      0.77   4.6e+03      23      54 ..     539     570 ..     509     626 .. 0.51
   4 ?   -3.3   0.0       1.7   9.9e+03      46      75 ..     722     751 ..     699     753 .. 0.57
   5 ?   -3.0   0.0       1.4   8.1e+03      13      40 ..     837     864 ..     835     876 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00055
                 TS-HHHHHHHHHHHHTS---HHHHHHHHHCC CS
        HrpJ 135 qlslqaLRdlYrqavsddqslsalyealler 165
                  +++  LR+lY+++++  +++ +++ +++e+
  CCE30449.1 183 RSRIEDLRRLYNRFLEVFPQAGDIWVEWIEM 213
                 578899***********************96 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.054
                 CCTS-HHHHHHHHHHHHT CS
        HrpJ 133 tdqlslqaLRdlYrqavs 150
                 +dq++ ++LR+ Y++a+ 
  CCE30449.1 306 QDQQKMDQLRKAYHRAIN 323
                 799*************94 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.77
                 XXXXXXXXXXXXHHHHHHCT-TT-HHHHHHHH CS
        HrpJ  23 kseaekleelldllekvldleaeeklkeLrkl 54 
                 + +a++le   +   ++ld+++e+ +k+  ++
  CCE30449.1 539 IKQAAALEPPVQDSIEPLDDDDEQAAKKSPTE 570
                 44455555555555555555555555443333 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.7
                 -.HHHHHHHHS-TT..--HHHHHHHHHHH-- CS
        HrpJ  46 e.klkeLrkllksgqlsssaqllalleslfg 75 
                   ++++L  +++    ++++ l ++ + +++
  CCE30449.1 722 LaQISKLEARMAEL-FPDDPKLNNFTARYSS 751
                 33566666665553.5666666666665555 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 1.4
                 XXXXXXXXXXXXXXXXXXXXXXHHHHHH CS
        HrpJ  13 Laqrkrsdakkseaekleelldllekvl 40 
                 +a r++ ++++++a++l++   +l  +l
  CCE30449.1 837 AAGRRLDQQRRNQASALHRDITFLLGIL 864
                 6678888888899999988888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 6650.88
//
Query:       CCE30450.1  [L=278]
Description: probable ASF1-anti-silencing protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-71  238.6   0.0    3.7e-71  238.1   0.0    1.3  1  ASF1_hist_chap  ASF1 like histone chaperone
  ------ inclusion threshold ------
      0.089   12.4   0.0        0.2   11.3   0.0    1.5  1  DMSP_lyase      Dimethlysulfonioproprionate lyase
       0.48   10.7   5.4       0.55   10.5   5.4    1.3  1  Na_trans_assoc  Sodium ion transport-associated


Domain annotation for each model (and alignments):
>> ASF1_hist_chap  ASF1 like histone chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.1   0.0   6.1e-75   3.7e-71       1     154 []       1     154 [.       1     154 [. 1.00

  Alignments for each domain:
  == domain 1  score: 238.1 bits;  conditional E-value: 6.1e-75
                     X-SEEEEEEEESS-SEETTS-EEEEEEEEESS--SS-EEEEEEEESSSSSGGGEEEEEEEEEES--SEEEEEEEEE----GGGSSSGGGSEEEEE CS
  ASF1_hist_chap   1 mslvnvtnvkvlnnpakfsdpfkfeitfeclekLeedlewkliyvgsaeseeedqeLdsvlvGPikvGvnkFvfeadppdvskipkedvlgvtvi 95 
                     ms+v+++ vkv+nnpakf+d+++feitfecle+Le+dlewkl+yvgsa+s+++dqeLds+lvGP++vGvnkF fead+p++++ip+ d++gvtvi
      CCE30450.1   1 MSVVSLLGVKVVNNPAKFTDKYQFEITFECLEALEKDLEWKLTYVGSATSDQYDQELDSLLVGPVPVGVNKFLFEADSPNINRIPDGDIIGVTVI 95 
                     9********************************************************************************************** PP

                     EEEEEETTEEEEEEEEEEEEEETT--CTTHHHS---GGGEEEEE-TTS-EEEE----TT CS
  ASF1_hist_chap  96 lltasYkeqeFvrvGYyvnneyedeelkenppekpkieklvRniladkprvtrfkikwd 154
                     llt++Y+++eFvrvGYyvnney++eel+++pp kp +e+++Rnil++kprvtrf+ikwd
      CCE30450.1  96 LLTCAYDGREFVRVGYYVNNEYDSEELNADPPGKPVVERVRRNILSEKPRVTRFAIKWD 154
                     **********************************************************8 PP

>> DMSP_lyase  Dimethlysulfonioproprionate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.3e-05       0.2      44      77 ..      23      56 ..       8      68 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.3e-05
  DMSP_lyase 44 alralvralkalepaLeweqsyseadasadfldk 77
                +++  +++l+ale++Lew+ +y +   s+++ ++
  CCE30450.1 23 QFEITFECLEALEKDLEWKLTYVGSATSDQYDQE 56
                4667799*****************9999999765 PP

>> Na_trans_assoc  Sodium ion transport-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.4   9.3e-05      0.55     108     165 ..     181     256 ..      66     265 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.3e-05
  Na_trans_assoc 108 leneededessess.eeekkk.eeeql...................ekdessssegstvDlkdpeeeleeieeeaeese 165
                      e+ ++ede++      ek + +                         d++ +se+  vD++ + ee+ ++ee   e +
      CCE30450.1 181 AEEADEEDEEEAAAeAAEKLDrQ---PgedeemagvdddlenghanGLDDDEMSEDGSVDIEGESEEELDEEEVDGEID 256
                     33222222222221123333331...13344567888888899999999************988777777777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2106.42
//
Query:       CCE30451.1  [L=752]
Description: probable RAS GTPase-activating protein sar1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-59  199.3   0.1    1.6e-58  197.8   0.0    1.8  2  RasGAP    GTPase-activator protein for Ras-like GTPase
    1.5e-29  102.9   5.6    1.5e-29  102.9   5.6    2.5  3  RasGAP_C  RasGAP C-terminus


Domain annotation for each model (and alignments):
>> RasGAP  GTPase-activator protein for Ras-like GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.51   4.6e+03      23      53 ..      50      79 ..      35      93 .. 0.60
   2 !  197.8   0.0   1.8e-62   1.6e-58       2     208 .]     167     374 ..     166     374 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.51
      RasGAP 23 nsvvsklleeytkrpegqeyLkkilkpllqk 53
                 ++ s++ ++++   +  +yL++ ++ l+q+
  CCE30451.1 50 TKISSQSKKNFVLE-KDVRYLDSRIALLIQN 79
                34455555666666.6666666666555555 PP

  == domain 2  score: 197.8 bits;  conditional E-value: 1.8e-62
      RasGAP   2 iseliklElessenpndllrsnsvvsklleeytkrpegqeyLkkilkpllqkilekedlnlelDPrkiyeelkkkkesktgkk.sessgkksekeasel 99 
                 ++++++++++++ ++++llr+n+ vs+++++yt+r+ gq++Lk +l++ +++++e +dl+le++P k+ye + ++ e+ tg+   ++++ ++ ++a e+
  CCE30451.1 167 FQSVLTYQFDHTTDYSSLLRANTPVSRMMTTYTRRGPGQSFLKTVLAERINSLIELKDLDLEINPLKVYERMLEQIEEDTGSLpANLPKGITGEQAAEN 265
                 8999***********************************************************************999999865899************ PP

      RasGAP 100 ekvsqmleknldkLkelvneildsIfksleqlPvgiRiickqirekvkekfpdaseeeilnligsflflrfliPaivnPklfglvdkqiseeqrrnLtl 198
                 ++v+ ++e +l+ L e++n +l++I+  le+ P+giR+ickqir ++k+k+pda+++ i++lig+f+flrf++Paiv+Pk ++l+d ++ e+ rr+Ltl
  CCE30451.1 266 SQVQAIIEPRLTMLTEIANGFLSTIIDGLEEAPYGIRWICKQIRSLTKRKYPDANDQVICTLIGGFFFLRFINPAIVTPKSYMLIDGTPAERPRRTLTL 364
                 *************************************************************************************************** PP

      RasGAP 199 iaKllqnlan 208
                 iaK+lqnlan
  CCE30451.1 365 IAKMLQNLAN 374
                 ********97 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.7      0.24   2.1e+03      28      54 ..      42      68 ..      27     101 .. 0.54
   2 ?   -4.1   0.2       1.8   1.6e+04      14      37 ..     221     245 ..     214     246 .. 0.67
   3 !  102.9   5.6   1.7e-33   1.5e-29       2     136 ..     553     672 ..     552     673 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.24
    RasGAP_C 28 qellneIakdirnkgrlrekrkeEles 54
                q++l ++++ i +++++    +++++ 
  CCE30451.1 42 QKVLRDLKTKISSQSKKNFVLEKDVRY 68
                344444444444444444444444444 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.8
    RasGAP_C  14 eLeelg.visrennyqellneIakd 37 
                 eL++l+  i+    y+ +l++I++d
  CCE30451.1 221 ELKDLDlEINPLKVYERMLEQIEED 245
                 5555552356667788999999877 PP

  == domain 3  score: 102.9 bits;  conditional E-value: 1.7e-33
    RasGAP_C   2 velkkkalenlkeLeelgvisrennyqellneIakdirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvleqlkkkkgklpfskqy 100
                 v+++++a+e l +L+elgvi++++++  l +e++++++++g+++e + +E+ +lee++kt++++n+yl  qle+Yk+y++nv++q++ +k         
  CCE30451.1 553 VRKGIRAMELLSQLQELGVIDKNDQFDILRDEVEQELQHLGSMKEGVLAETLKLEEVYKTIRDHNSYLVGQLETYKSYLHNVRSQSEGNK--------- 642
                 789**********************************************************************************99986......... PP

    RasGAP_C 101 fkkrelkksgklpkfgsykysakqLeekgVLleieg 136
                       +k++k + +g+yk++++qLe++gV+ ++++
  CCE30451.1 643 ------RKQQKHQVLGPYKFTHQQLEKEGVIQKSNV 672
                 ......5678899******************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       912  (0.0508673); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5234.81
//
Query:       CCE30452.1  [L=184]
Description: related to peroxiredoxin 5, mitochondrial precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-27   95.2   0.0    3.3e-27   95.0   0.0    1.1  1  Redoxin   Redoxin
    3.5e-05   23.7   0.0    5.4e-05   23.1   0.0    1.3  1  AhpC-TSA  AhpC/TSA family


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   3.7e-31   3.3e-27       1     147 []      31     183 ..      31     183 .. 0.91

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 3.7e-31
                 -TTSBB---E.CCEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHH..HHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH.....TT-TSEEE CS
     Redoxin   1 kagdkaPdft.lplaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehp..yleklaellkekgvdvvavvadndafvkefwgk.....eglkfpvl 90 
                 kagd++P+f  l   ++ g +v+l+e fk  k ++++vpgaf++tCs  h+  y+++     + k   +v+vv++nd+fv+++w++      +  ++++
  CCE30452.1  31 KAGDAVPSFDgL-MENSPGFKVNLAEeFKASKGYIVGVPGAFTGTCSGVHIpgYINHP----ALKKAGQVFVVSVNDPFVMKAWAEqldpaGKSGIRFI 124
                 79********53.5589***********************************999998....445677999*******************955579*** PP

                 E-TTSHHHHHTT-TTEEE.GGG...EEE-EEEEEEETTEEEEEEESSSCHT.STTSHHHHH CS
     Redoxin  91 sDgsaaftkalGlrleedaseg...lrtpryavidedgkvvylevepepet.eesnaeavl 147
                 +D+sa+ftkal   l+ d se     r++rya+ +e+gkv++++vep+ ++ ++s a++vl
  CCE30452.1 125 ADPSAEFTKALE--LDFDGSEIfggARSKRYALKIENGKVTKTFVEPDGTGaDVSLAKKVL 183
                 ************..6678888789************************9779999998887 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   6.1e-09   5.4e-05       2     103 ..      33     140 ..      32     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 6.1e-09
                 TSB----EEE..STTCEEEEC.HHHTTSEEEEEEESTST-CCHHH.HHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.....SSEEEE-TTS CS
    AhpC-TSA   2 gdkapdfelk..nadgetvsl.sdykgkpvvlffypkdwcpvCtt.elpalaklyeefkergvevigvsvdspeshkkfiekes....lnfpllsDeeg 92 
                 gd++p+f +   n  g +v+l +++k ++  ++ +p++++  C   ++p +  +++++k+   +v+ vsv++p+ +k+++e+ +      ++ ++D++ 
  CCE30452.1  33 GDAVPSFDGLmeNSPGFKVNLaEEFKASKGYIVGVPGAFTGTCSGvHIPGYI-NHPALKK-AGQVFVVSVNDPFVMKAWAEQLDpagkSGIRFIADPSA 129
                 89999999987777899****5566999999************972555555.5788885.668*********************************** PP

                 HHHHHTT-EET CS
    AhpC-TSA  93 kvakaygvlke 103
                 ++ ka+++ ++
  CCE30452.1 130 EFTKALELDFD 140
                 ****9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1357.78
//
Query:       CCE30453.1  [L=529]
Description: probable ring-finger protein Ariadne-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-22   79.4  48.4    3.6e-12   46.3   7.8    4.6  4  IBR           IBR domain, a half RING-finger domain
  ------ inclusion threshold ------
      0.017   15.6   0.0      0.038   14.5   0.0    1.6  1  UN_NPL4       Nuclear pore localisation protein NPL4
       0.02   14.8   8.2       0.02   14.8   8.2    4.9  4  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
      0.026   14.9   8.8      0.026   14.9   8.8    4.3  3  zf-RING_2     Ring finger domain


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   6.0     0.019        86      26      55 ..     142     170 ..     138     173 .. 0.73
   2 !    5.5   0.1    0.0045        20      12      32 ..     176     198 ..     169     204 .. 0.68
   3 !   46.3   7.8     8e-16   3.6e-12       1      62 []     211     278 ..     211     278 .. 0.92
   4 !   38.2  14.8   2.8e-13   1.3e-09      13      58 ..     296     342 ..     283     348 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.019
         IBR  26 CeaiieksegcksvtCskCgfefCfnCkke 55 
                 C+  +e++e+  +    kCg+++C+ C++ 
  CCE30453.1 142 CDICCEDEEDLPT-FAMKCGHRYCVGCHAH 170
                 7777777777443.356799*******965 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0045
         IBR  12 les..dpnlkwCprpdCeaiiek 32 
                 +++  +  +++Cp+ +C++i+ +
  CCE30453.1 176 IKQegEAAKIQCPSDGCGRIYDS 198
                 3331245599********99855 PP

  == domain 3  score: 46.3 bits;  conditional E-value: 8e-16
         IBR   1 ekyeklklkkslesdpnlkwCprpdCeaiieksegcks.......vtCskCgfefCfnCkkewHeglsC 62 
                 ++y++l+ ++++e ++ +kwCp+pdC +++e s ++k+       v+Cs Cg++fCf C ++ H+++ C
  CCE30453.1 211 DRYHELLNRNYVEGKEHFKWCPAPDCPNVVECSVKKKEldkvvpaVECS-CGYRFCFGCPHSDHQPAPC 278
                 69****************************88888555677889899**.****************999 PP

  == domain 4  score: 38.2 bits;  conditional E-value: 2.8e-13
         IBR  13 es.dpnlkwCprpdCeaiieksegcksvtCskCgfefCfnCkkew..He 58 
                 ++ + n+k Cp  +C++ iek+ gc+++tC+kC++efC+ C+  w  H+
  CCE30453.1 296 NWiSANTKECP--KCGSTIEKNGGCNHMTCRKCKYEFCWMCMGLWseHG 342
                 4556799****..********************************6554 PP

>> UN_NPL4  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   8.5e-06     0.038       3      64 ..     398     458 ..     396     464 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.5e-06
                 ---EEEEEETTEEEEEEE-TTSBHHHHHHHHHHHSS-STTT-EEESSTTCGCCCSSSSSSCC CS
     UN_NPL4   3 eeiiiRvqSadGikRieisekstlktllekvaeelkfsengfslylernkttelvssssksv 64 
                 ee +   q a+G++ ie++  s +++ l+  ++ lk + + f+ yl rn  te+  +++k +
  CCE30453.1 398 EEKMFQLQTASGMSWIEVQYLSSASQALQTCRQTLKWT-YAFAFYLARNNLTEIFEDNQKDL 458
                 666778899****************************9.***************86666666 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   8.2   4.4e-06      0.02       1      39 [.     142     188 ..     142     189 .. 0.85
   2 ?   -1.7   4.5      0.62   2.8e+03      14      25 ..     257     268 ..     242     279 .. 0.82
   3 ?    2.9   0.5     0.023     1e+02      28      41 .]     296     308 ..     294     308 .. 0.83
   4 ?   -2.5  14.9       1.1   4.8e+03       1      31 [.     305     340 ..     305     350 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.4e-06
                 -TTT-S--SS-E..E-TTS--B-CHHHHHHHHC.......TSSB--T CS
    zf-C3HC4   1 CpiCleeakepn.elleCkHsfCskCirkilks.......rkkvkCP 39 
                 C iC+e  ++    +++C+H++C  C  ++l +         k +CP
  CCE30453.1 142 CDICCEDEEDLPtFAMKCGHRYCVGCHAHYLTQkikqegeAAKIQCP 188
                 9*****999977689***************99888777776667787 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.62
                 E-TTS--B-CHH CS
    zf-C3HC4  14 lleCkHsfCskC 25 
                    C+ +fC+ C
  CCE30453.1 257 ECSCGYRFCFGC 268
                 568********9 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.023
                 HHHHCTSSB--TTT CS
    zf-C3HC4  28 kilksrkkvkCPlC 41 
                 ++++  ++++CP+C
  CCE30453.1 296 NWIS-ANTKECPKC 308
                 7888.88889**** PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.1
                 -TTT-S--SS-E......E-TTS--B-CHHHHHHHH CS
    zf-C3HC4   1 CpiCleeakepn.....elleCkHsfCskCirkilk 31 
                 Cp C ++++++      +  +Ck +fC +C+  + +
  CCE30453.1 305 CPKCGSTIEKNGgcnhmTCRKCKYEFCWMCMGLWSE 340
                 999999999988777767777777777777766665 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   8.8   5.8e-06     0.026       2      41 ..     141     188 ..     140     192 .. 0.79
   2 ?   -2.4  11.4       1.4   6.2e+03      10      43 ..     249     308 ..     240     309 .. 0.60
   3 ?    0.3  13.2       0.2     9e+02       2      39 ..     304     344 ..     303     349 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.8e-06
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssst.........CP 41 
                  C IC+e+ + +  + +++CgH ++  C +++l+++++         CP
  CCE30453.1 141 ACDICCEDEE-DLPTFAMKCGHRYCVGCHAHYLTQKIKqegeaakiqCP 188
                 5****84443.33445788*************99998888888888888 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
   zf-RING_2  10 lssadsvlllpCgHvfhreCl............erwlrssst..............CPlC 43 
                 l++   ++ + Cg+ f++ C             ++wlr++                CP C
  CCE30453.1 249 LDKVVPAVECSCGYRFCFGCPhsdhqpapcelvKKWLRKCADdsetanwisantkeCPKC 308
                 4444445566899*******7667777777777555544444444444444444467766 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.2
   zf-RING_2   2 eCpICleelssadsvl...llpCgHvfhreClerwlrssst 39 
                 eCp C + ++++  +    + +C++ f++ C+  w ++  +
  CCE30453.1 304 ECPKCGSTIEKNGGCNhmtCRKCKYEFCWMCMGLWSEHGTS 344
                 899**999977666442214479899*****9999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1410  (0.0786435); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3730.79
//
Query:       CCE30454.1  [L=723]
Description: probable EXO1-exonuclease which interacts with Msh2p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-22   79.8   0.0    4.4e-22   78.2   0.0    1.9  2  XPG_I          XPG I-region
    1.3e-05   25.6   0.0    2.9e-05   24.5   0.0    1.6  1  XPG_N          XPG N-terminal domain
    8.4e-05   22.2   0.0    0.00016   21.2   0.0    1.4  1  XPG_I_2        XPG domain containing
      0.005   17.4   0.0       0.03   14.9   0.0    2.2  3  5_3_exonuc     5'-3' exonuclease, C-terminal SAM fold
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.029   14.5   0.0    1.5  1  TPR_2          Tetratricopeptide repeat
       0.12   13.0   0.2        2.7    8.7   0.0    2.5  2  HHH_5          Helix-hairpin-helix domain
       0.13   13.1   0.0        0.4   11.6   0.0    1.9  1  TPR_14         Tetratricopeptide repeat
        1.5    7.2   5.1        2.2    6.7   5.1    1.1  1  Peptidase_S64  Peptidase family S64


Domain annotation for each model (and alignments):
>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0     2e-25   4.4e-22       2      94 .]      80     167 ..      79     167 .. 0.84
   2 ?   -3.4   0.0       5.8   1.3e+04      38      58 ..     197     228 ..     196     247 .. 0.61

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 2e-25
                 HHT--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT.ECECTT..EEECEEEEEEHHHHHHHHT--HHHHHHHHHHHCET CS
       XPG_I   2 lmgipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnlskkkskkkkekekkkvevidlekvlkelgltreqlidlaillgcD 94 
                 ++g+pyvvAp+EA+Aq++yL+++glv++++s+DsDll+FGa+++l++l   ++++    e +  +   ++   + +g+++ +++ +ail+gcD
  CCE30454.1  80 KVGVPYVVAPYEADAQLVYLERQGLVHGILSDDSDLLVFGAKRLLTKLD--QYGNF--IEINRRDFCACR-EVSLTGWSDTDFRRMAILSGCD 167
                 78**********************************************7..55555..223334445553.345579***************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.8
                 HHTT-SEEEESTT.ECECTT............ CS
       XPG_I  38 llFGapkvlrnlskkkskkk...........k 58 
                 l F +++v +n+ +++++++           k
  CCE30454.1 197 LQFEGKRVSENYLTQFYQAEltflhqwvfcpK 228
                 77888999999886666665455555555443 PP

>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.3e-08   2.9e-05      63     100 ..       2      39 ..       1      40 [. 0.91

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHTTEEEEEEE--S--GGGHHHHHHHHHHHHH CS
       XPG_N  63 srllrlldfgikPifVFdgkapdlkkeelekrserrqe 100
                 +r+ +l++fgi+P++VFdg+ ++ k+ +++ r   r+e
  CCE30454.1   2 HRVRMLQYFGITPYMVFDGDYLPSKAATEAFRARSREE 39 
                 8999************************9988877765 PP

>> XPG_I_2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.1e-08   0.00016       5      58 ..      70     119 ..      66     141 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 7.1e-08
     XPG_I_2   5 mvpavieaLknrwkakditevvpgEADkfcAvlA.rklgcaVLTsDSDLlvhdlg 58 
                 m  a+i  Lk   k++++++v p EAD++  +l  + l   +L++DSDLlv+  g
  CCE30454.1  70 MATALIQQLK---KVGVPYVVAPYEADAQLVYLErQGLVHGILSDDSDLLVF--G 119
                 7788999999...9*******************98889*************9..4 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         8   1.8e+04      26      40 ..      66      80 ..      62      82 .. 0.81
   2 !   14.9   0.0   1.3e-05      0.03      18      61 ..     167     209 ..     160     227 .. 0.80
   3 ?   -1.8   0.0       2.2     5e+03      25      45 ..     614     634 ..     612     653 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 8
  5_3_exonuc 26 iGektAakLlkeygs 40
                i +  A++L+++ ++
  CCE30454.1 66 ITPEMATALIQQLKK 80
                778899999999876 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.3e-05
  5_3_exonuc  18 DnipGvpgiGektAakLlkeygsleeilenldelkekklkekLe 61 
                 D + G pg+G ktA +Ll++ ++ e++++ l+ +++k++ e+  
  CCE30454.1 167 DYLNGLPGVGLKTAYRLLRKSKTPEHVVRLLQ-FEGKRVSENYL 209
                 8899***********************99665.45666666644 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.2
  5_3_exonuc  25 giGektAakLlkeygsleeil 45 
                   G+ tAa++l+  + l++  
  CCE30454.1 614 STGPSTAATMLTPLQRLAARA 634
                 57999*****99988887654 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.3e-05     0.029       6      33 ..      42      69 ..      38      70 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
       TPR_2  6 nlGlayyklgdyeeAleafekAleldPn 33
                 l++a++k+g++ +A++ f+k++ + P+
  CCE30454.1 42 KLANALLKAGKPSQAAHEFQKCIDITPE 69
                69***********************996 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.26   5.7e+02      32      57 .]      55      80 ..      40      80 .. 0.70
   2 ?    8.7   0.0    0.0012       2.7       3      28 ..     168     192 ..     167     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.26
                S-HHHHHTSTTS-HHHHHHHHHHHHH CS
       HHH_5 32 adveeLakipGiGkktAeriilelkd 57
                ++++e++k  +i ++ A  +i++lk+
  CCE30454.1 55 QAAHEFQKCIDITPEMATALIQQLKK 80
                35678889889999999999999986 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0012
                 HHHTSTT--HHHHHHHHTTT--SHHH CS
       HHH_5   3 eLlsvsGiGpktAlallsaGiesved 28 
                 +L +++G+G ktA +ll++  +++e 
  CCE30454.1 168 YLNGLPGVGLKTAYRLLRK-SKTPEH 192
                 688999*******999999.778775 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00018       0.4       4      39 ..      40      75 ..      37      79 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00018
      TPR_14  4 llalaeallalGdpdeAiallrralalaPddaeawl 39
                 ++la all +G+p +A+  ++++++  P+ a+a++
  CCE30454.1 40 KKKLANALLKAGKPSQAAHEFQKCIDITPEMATALI 75
                578*****************************9986 PP

>> Peptidase_S64  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.1   0.00099       2.2       6     126 ..     500     646 ..     495     661 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00099
  Peptidase_S64   6 glkkkkkdeeskekkslepsksnskskesgesssslkelrpifesekaseeessaeedsstelae.............................ss 72 
                    + k +  +ee k++  + +++s+ +++  gess+s+++  ++ +s++ ++ ++++++dss+ +++                             s+
     CCE30454.1 500 SDKAEVVKEEMKSQPVAGEASSEGEASAVGESSQSASQDVSTSQSTQITMPSQKQHDDSSAITMQpppskqrpmplktpsrahlsrfayssrsfST 595
                    455555566666666666677777888888888888888888788888899999999988888889999999999999998888888888876544 PP

  Peptidase_S64  73 sekssskqssSlfSksrktystkqssaksssskakksssvakaedvgkplrvle 126
                      +  s+q sS+fS +  t st  s a++  +  ++  ++  ++++  p++v +
     CCE30454.1 596 PASPMSYQ-SSIFS-TGPTPSTGPSTAATMLTPLQRL-AARANTTMASPQQVTS 646
                    45555555.88999.6777788877777776655444.5666677777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4778.13
//
Query:       CCE30455.1  [L=226]
Description: uncharacterized protein CPUR_04303 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-48  162.1   1.2    9.7e-48  161.8   1.2    1.1  1  Tma16     Translation machinery-associated protein 16
  ------ inclusion threshold ------
      0.068   12.8   0.4      0.097   12.3   0.4    1.3  1  CHASE7    Periplasmic sensor domain


Domain annotation for each model (and alignments):
>> Tma16  Translation machinery-associated protein 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.8   1.2   1.1e-51   9.7e-48       3     145 ..      21     164 ..      19     165 .. 0.98

  Alignments for each domain:
  == domain 1  score: 161.8 bits;  conditional E-value: 1.1e-51
       Tma16   3 kalHpkSRkakqLaraalRdeklakkkkerakkkssllervkffqealde.ekkplsleelkeliekylkRndeeleelkserrkgrpkskreelleek 100
                 +alH kSR++ +L++aa+Rd++l+k++++r kk++++l+rv+ff+e+l++ +++pl+ e +++li+k+++++dee++++k++rr+grp+s++e++l+ k
  CCE30455.1  21 NALHAKSRDSFRLHKAAIRDQRLEKLAAARGKKEQPILDRVAFFHEELAKkDNEPLDVEAVQSLIQKFIHQYDEEYDSVKKARRSGRPPSTKEDMLKLK 119
                 79*********************************************999899********************************************** PP

       Tma16 101 kereeeeyetGfevpDLtdeenvkllreWngdlsslstlkfiris 145
                 +++ e+eye+Gf +pD+t++e+ kll++W+g++++lstl ++++s
  CCE30455.1 120 IKALEAEYEKGFVLPDVTSAESAKLLENWKGEWAYLSTLSWVKVS 164
                 *******************************************98 PP

>> CHASE7  Periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   1.1e-05     0.097       8      84 ..      33     107 ..       5     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.1e-05
      CHASE7   8 ledayvasqrnqlaevakaldrqlQfsvdkLlflrngmeealqapldldalraavqqfeerRdkpaWqlelnrrral 84 
                 l++a + +qr  l++ a a  ++ Q  +d++ f+ + + +  ++pld++a+++ +q+f ++ d++  +++ +rr + 
  CCE30455.1  33 LHKAAIRDQR--LEKLAAARGKKEQPILDRVAFFHEELAKKDNEPLDVEAVQSLIQKFIHQYDEEYDSVKKARRSGR 107
                 5666666665..899999999****************************************9999999997777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1711.98
//
Query:       CCE30456.1  [L=260]
Description: related to MAM33-mitochondrial acidic matrix protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-73  246.8   4.9    2.4e-73  246.6   4.9    1.1  1  MAM33      Mitochondrial glycoprotein
  ------ inclusion threshold ------
      0.031   14.4   0.5      0.067   13.2   0.1    1.7  2  Dynamin_N  Dynamin family
        0.1   11.9   0.3        6.5    6.0   0.0    2.7  3  MipZ       ATPase MipZ


Domain annotation for each model (and alignments):
>> MAM33  Mitochondrial glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.6   4.9     4e-77   2.4e-73       1     212 []      51     258 ..      51     258 .. 0.96

  Alignments for each domain:
  == domain 1  score: 246.6 bits;  conditional E-value: 4e-77
       MAM33   1 LesEikyekeavkeeeeepesvkeflenggFeiedkpgkeevtLtrkfgdekIrvtfsvadlaneeeeeeeeeeeeedeaeeeeeeeeeeeeeeeesfp 99 
                 LesEi++e+e+  ++e++p+s+k+fl n++Fe+ d+pg+e+v+L+r+fg+ekI+v+fs+++l+n  +++ +e++e e e++ee   ee+ e ee+ +  
  CCE30456.1  51 LESEIQVEQET--KSEQQPASIKDFLANSPFELVDTPGEETVKLVREFGKEKITVSFSISELNN--FDPYSEDAELEAEEMEEGRAEEDVEGEEDGAAN 145
                 89********7..5679***********************************************..777777888888888788888888889****** PP

       MAM33 100 vrlsvtiekpgksggaLelectaqdgefvidnvsyykdaelakeetaeadwkrrllyeGPpFenLDedLqellerYLeerGIdeelaefipdysevkEq 198
                 ++l+v+iekpg+++gaL+++++aqdg ++i n++yy+da+ a+ +t e+++kr+++y GP+F++LD dLq l+er+LeerG++e++a+f+pdy+evkEq
  CCE30456.1 146 INLNVVIEKPGSKSGALVIDASAQDGAISISNMYYYDDAKTAHIDTPESAHKRADVYAGPAFGSLDVDLQILMERFLEERGVTEAMAAFVPDYVEVKEQ 244
                 **********999************************************************************************************** PP

       MAM33 199 keYvrWLenvkkFv 212
                 +eYv+WL+nvk+Fv
  CCE30456.1 245 EEYVKWLNNVKDFV 258
                 *************8 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.1e-05     0.067      23     112 ..       6      88 ..       4     107 .. 0.83
   2 ?   -1.3   0.0      0.33     2e+03      61      82 ..     109     130 ..      89     192 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
                 -S---SSS---S-EEEEECCT---CCS...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETTS-SEEEEE---B- CS
   Dynamin_N  23 ilprgpnptTrrplelqlgeeeeaseravkeelkekekkledfsevreeieketekiagankgiskkvillkilsllvkgltlvDlPGld 112
                 i p+++ + T ++  l+ ++     +++++ +  ++e ++e + +++ ei+ e+e+++       +++ ++k++ l ++  +lvD+PG  
  CCE30456.1   6 IRPSSTAIKTSAVSALRSSTGAAQYSTESSRRAANGECDDELAAKLESEIQVEQETKS------EQQPASIKDF-LANSPFELVDTPGEE 88 
                 5699**************99988667777778888899******************99......4456666654.5677899******65 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.33
                 EB--CHHHHHHHHHHHHHHHTS CS
   Dynamin_N  61 kledfsevreeieketekiaga 82 
                 +l++f+ + e  e e e+ ++ 
  CCE30456.1 109 ELNNFDPYSEDAELEAEEMEEG 130
                 3333333333333333333321 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0011       6.5      73     113 ..      50      90 ..      30     103 .. 0.80
   2 ?    1.8   0.0      0.02   1.2e+02      77     143 ..     135     190 ..      98     204 .. 0.53
   3 ?    1.2   0.0     0.032   1.9e+02      26      56 ..     201     230 ..     195     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0011
                 -HHHHTTS-HHHHHHHHHHHHHHHHHH-SEEEEE--SS--H CS
        MipZ  73 aeeaeveeeeeaevaeleelvadleaeldfividtPGsdsa 113
                 + e+e++ e+e++ ++  + ++d+ a++ f ++dtPG+++ 
  CCE30456.1  50 KLESEIQVEQETKSEQQPASIKDFLANSPFELVDTPGEETV 90 
                 44567777777777899999*****************9874 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.02
                 HTTS-HHH.HHHHHHHHHHHHHHH-SEEEEE--SS--HHHHHHHHT-SEEEEEEESSHHHHCCCEEE- CS
        MipZ  77 eveeeeea.evaeleelvadleaeldfividtPGsdsalsrlahsladtlvtPlndsfvdfdllgkvd 143
                 +ve+ee+     +l+            +vi+ PGs+s    + +s  d  +   n  + d    +++d
  CCE30456.1 135 DVEGEEDGaANINLN------------VVIEKPGSKSGALVIDASAQDGAISISNMYYYDDAKTAHID 190
                 333222220223344............55566666655555555555555555555555555555555 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.032
                 HTTT--EEEEE--TTT-HHHHHHHHHHHHHH CS
        MipZ  26 lkkGarvaaidldlrqrtlarylenraatae 56 
                 +++G   +++d+dl q  ++r+le r  t++
  CCE30456.1 201 VYAGPAFGSLDVDL-QILMERFLEERGVTEA 230
                 67899999*****8.8899*****9987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1948.84
//
Query:       CCE30457.1  [L=463]
Description: related to putative oxysterol-binding protein OSBP [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-51  173.4   0.0    8.8e-40  136.7   0.0    2.2  2  Oxysterol_BP  Oxysterol-binding protein


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   0.0   4.9e-44   8.8e-40       3     270 ..      27     384 ..      25     389 .. 0.85
   2 !   31.5   3.2   4.4e-12   7.8e-08     313     357 ..     389     438 ..     387     457 .. 0.81

  Alignments for each domain:
  == domain 1  score: 136.7 bits;  conditional E-value: 4.9e-44
                   HCCHTTSTT.-BCCCS..---GGGEEEEEHHHHHHHCCTTCHHHHHHHC.SSHHHHHHHHHHHHHHCCCGCTSTSSSEEE---TT-EEEEEETTCEE CS
  Oxysterol_BP   3 wsilkkciG.kDLski..slPvffneplSlLqrlaedleyselLdkaakeddsleRlayVaaFalSsyastikrrlkKPFNPlLGEtfelvredkgf 96 
                   + ilk+ iG  DL ++  slP +++ep+  L+ +  +l  ++ + ++ ++d++++R++ V++F+l++  ++ k++ +KP+N  LGE f++ +e ++ 
    CCE30457.1  27 LGILKNFIGvSDLASVrfSLPSQLLEPTPNLE-YWTYLDTPNAFVAIGTSDEPIDRMLEVIRFWLTKDLKYAKGKPCKPYNSCLGEFFRCNWETEDN 122
                   6799*****558*988669*************.5679*******************************************************66333 PP

                   ...........................................................EEEEEEEETTTTEEEEEEEE..CTEEEEEEEEEEEEE- CS
  Oxysterol_BP  97 ...........................................................rfiaEQVsHhPpvsAfhaes..egweldgeikvkskfl 132
                                                                               +++EQ+sHhPpvsAfh+++  +g++ +g  +++ kf+
    CCE30457.1 123 aprietadlngaiasangsdkgslrslkappksdknestvslsvpkhgtstpdkkpiriSYLTEQTSHHPPVSAFHITCpeRGLSARGFDQITAKFT 219
                   36667778888899999999999********************************************************9999************** PP

                   SSEEEEEE-SEEEEEE....EEESEEEEEEE--EEEEE-TTTTS-EEEEEEEEEEEETTT--EEEEEEE---SSS---SSEEEEEEEE......... CS
  Oxysterol_BP 133 gkslevkpeGtahlel....lkksgehYtwtkpttivhniivgklwvelsgeveitnhstgdkakleFkkkglfsskksnkvegkvkd......... 216
                   g+s++v p G+ +l +     k  ge+Y++t+p +++ ++  g+l v +s+ ++it  +t+ ka+l++ ++g+++ ++ nk+ g++++         
    CCE30457.1 220 GTSVKVLP-GEHNLGIfislDKFGGETYQLTHPAAHLGGLFRGSLSVSVSEMSYITCPETKLKAILHYVEEGWLG-RTTNKIDGVIFRydpendtks 314
                   ******99.544443333326779********************************888***************5.89****999997778888888 PP

                   .....TTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT.........-..BSXXGCGSSTTBCCCCC CS
  Oxysterol_BP 217 .....kkkevlyeisGkwdeelyikkkktekkeeeedasek.........s..kvkekeeqeefeseklW 270
                         +++vl+++sG w e+++++      k++  +++ +             v ++++q  +es +lW
    CCE30457.1 315 rvqdvPDEDVLIRLSGPWREKIVFTIGPRPVKSTPPEQQYTiadvaplhvApkVVPPEDQQLPNESLTLW 384
                   888888899**************94444444444444333343444444415466677777888888898 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 4.4e-12
                   HHHHTT-HHHHHHHHHHHHHHHHHHHHHHCCTT.----SSEEEEE....T CS
  Oxysterol_BP 313 raleegdideAeeeKkrlEekQRerrkereekk.ewkpkwFekek....d 357
                   +a+ ++++++A+e K +lEe+QR+++++re+++ +w+p +Fe+++    +
    CCE30457.1 389 KAIHAKKYSKATELKIELEESQRQKARQREKNQeTWQPVFFEHVTgnggK 438
                   68999************************666647*******99854441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3575.27
//
Query:       CCE30458.1  [L=993]
Description: related to SRO77-polarized exocytosis by regulating SNARE function [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.1e-119  399.7   0.0   3.1e-118  394.9   0.0    2.2  2  Lgl_C        Lethal giant larvae(Lgl) like, C-terminal
    3.6e-06   27.6   0.1      0.011   16.6   0.0    4.1  3  WD40         WD domain, G-beta repeat
     0.0094   16.2   0.0        0.2   12.0   0.0    3.0  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> Lgl_C  Lethal giant larvae(Lgl) like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.0    0.0078        47      99     127 ..     247     275 ..     237     313 .. 0.82
   2 !  394.9   0.0  5.2e-122  3.1e-118       2     393 .]     510     901 ..     509     901 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.0078
                 EEEEEETTSEEEEEETTTTEEEEEEEGGG CS
       Lgl_C  99 FvAigyesgslviiDlRGPaviynenise 127
                 F+A +  +gslv+ D++  +vi    +++
  CCE30458.1 247 FIATAHDDGSLVLWDIKEQKVITARTLQD 275
                 9*********************9888777 PP

  == domain 2  score: 394.9 bits;  conditional E-value: 5.2e-122
                 --EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEE CS
       Lgl_C   2 vevksvslaaetlElavaletGeVvvfkfgknknfknkeksgaleleqkrlqlknskeklldisdrakpslkegflPvtllnlkqgevsalkvSniGFv 100
                 v+++++s++++t+E++v+++tGe +++++g n+++++ + +++l+++         ++ l+dis+ra+p+lkeg++P++l ++ qg+++a++vSn+GFv
  CCE30458.1 510 VDITTMSMSSSTGEFVVGTRTGEAIIYRWGLNRFYGRDQPPQQLDPN---------PKGLTDISSRAEPTLKEGLQPFVLYEMMQGPITAIQVSNVGFV 599
                 89**********************************76667777766.........9****************************************** PP

                 EEEETTSEEEEEETTTTEEEEEEEGGG..T-SS----EEE................EEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEE CS
       Lgl_C 101 AigyesgslviiDlRGPaviynenisekllskeksskvtt................ieFsvmelggdgyssilllvGtnkGelltfkilPessGrfeve 183
                 A+g e g l++iDlR P++ y++ +++  ++ ++ s +++                ieF+vm+l++d+yssi+++vGtn G+++tfk+lP+ +G+++++
  CCE30458.1 600 AVGSELGFLALIDLRVPKIFYQAPMTDFAKQDRRASLFKRdhhgpteeaqkewpvvIEFGVMTLDEDKYSSICCFVGTNLGKVITFKLLPSADGAYSAQ 698
                 ***************************44444444444445555566677788889******************************************* PP

                 EEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTS CS
       Lgl_C 184 fadktaaddskilkiasieketgesalAtiskmqklskglvveglvvatskkdirvikpakskethksfedellcsaisvvkteekkkgivlvaltkdg 282
                 +a+++ + d++i+++ +ie++tg+ alAt++++++l++g  v+g++va+++++irv+kpa+sk+++k+f+d +lc++++v ++e   +g ++val+ d+
  CCE30458.1 699 AAGVV-HFDGPIVSLSPIEANTGKPALATGPIVASLREGRHVDGALVAVTQSEIRVFKPATSKGASKVFDD-ILCDSAAVAELE--LQGFAVVALFGDR 793
                 *****.****************************************************************9.********7665..6************ PP

                 EEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES----..------B---TT----------TTTS-SS-----HHHHH CS
       Lgl_C 283 evkvlslPsLkeikkvklpealdarrlsessilrnGdilvrlgkleaallsvlgksktskeeeetdtlynekaaipprPqvsslqWirGtqyvskedLd 381
                 +++++s+P+Lkei k+ l  ++d++r+++  + ++Gdi+ ++g++e+a++ v+g +k+   +++ d ++n+k+++pprP++s+lqWi+Gtqyvs+ dLd
  CCE30458.1 794 TARAFSIPGLKEIGKATL-PMVDPSRSTSAIVTQTGDIFAWTGPSELAVIHVWGTGKP--LQQSPDIMINPKLECPPRPTISNLQWISGTQYVSPLDLD 889
                 ******************.689***********************************9..8888999******************************** PP

                 HHHH-TT----S CS
       Lgl_C 382 lLigGpnRppsk 393
                 lL+gG++Rppsk
  CCE30458.1 890 LLVGGADRPPSK 901
                 ***********9 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.62   3.7e+03      12      29 ..      38      55 ..      31      58 .. 0.83
   2 !   16.6   0.0   1.8e-06     0.011      16      38 .]     239     261 ..     224     261 .. 0.90
   3 !    5.4   0.0    0.0062        37      28      38 .]     473     483 ..     465     483 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.62
                SEEEEEEETTSSEEEEEE CS
        WD40 12 svtslafspdgawlasGs 29
                 ++++a++p +++la G+
  CCE30458.1 38 QISCFAYDPVQSLLAIGT 55
                499******999999885 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.8e-06
                 EEEETTSSEEEEEETTSEEEEEE CS
        WD40  16 lafspdgawlasGsdDgtvriWd 38 
                   ++p+g+++a+++dDg++ +Wd
  CCE30458.1 239 ALYHPSGTFIATAHDDGSLVLWD 261
                 459*******************9 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0062
                 EETTSEEEEEE CS
        WD40  28 GsdDgtvriWd 38 
                 ++ D t+riWd
  CCE30458.1 473 AHGDSTIRIWD 483
                 656*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.29   1.8e+03      38      60 ..      36      58 ..      30      65 .. 0.84
   2 !   12.0   0.0   3.3e-05       0.2      43      82 ..     238     277 ..     227     303 .. 0.79
   3 ?   -2.2   0.0      0.91   5.4e+03      52      73 ..     469     490 ..     465     498 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.29
  ANAPC4_WD40 38 dsevrsLaWkpdgklLavaysdg 60
                 +s+++++a+ p  +lLa++++++
   CCE30458.1 36 NSQISCFAYDPVQSLLAIGTNES 58
                 57899999999999999998876 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.3e-05
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                  +  ++p+g+++a a++dg++ l d++++kv+ + + ++  
   CCE30458.1 238 HALYHPSGTFIATAHDDGSLVLWDIKEQKVITARTLQDCG 277
                  55699**************************999888765 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.91
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvv 73 
                  ++  a+ d+++r+ d+ +++ +
   CCE30458.1 469 IIQAAHGDSTIRIWDSGHADEI 490
                  6778999******999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (993 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 7094.19
//
Query:       CCE30459.1  [L=278]
Description: uncharacterized protein CPUR_04307 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-05   24.4   0.0    3.8e-05   23.6   0.0    1.3  1  Trypsin    Trypsin
  ------ inclusion threshold ------
      0.029   15.3   0.0      0.063   14.2   0.0    1.5  1  Trypsin_2  Trypsin-like peptidase domain


Domain annotation for each model (and alignments):
>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   4.3e-09   3.8e-05      22     102 ..      36     119 ..      22     167 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 4.3e-09
                 TC..EEEEEEEEEETT...EEEEEGGGTTT.GGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTT.TTTTEEEEEESSSSTSBS CS
     Trypsin  22 sg..khlCgGslisen...wvlTAaHCvsn.asdvkvvlgehnlkksegkeqklkvekvivhpnynpst.ldnDiallklkepvklgd 102
                  +  kh C++s+++++   +++TAaHC+s   ++++   g    ++  + + +++v  ++++p++n++   + D+a + l +   ++ 
  CCE30459.1  36 DNlsKHYCTASVVDSKqgnIIITAAHCLSTdGTEINFAPGY---NNGATPYGTYPVLATYINPKWNSKYdETVDFAFMMLGKG-MFNG 119
                 334789*******9866669*********966666665554...44444456799999999******9977899999998776.4444 PP

>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     7e-06     0.063       5     141 ..      47     188 ..      31     193 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7e-06
   Trypsin_2   5 lvgsdg..lilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadp........elDlAllkvssderaglpplplgpsealkgg......... 84 
                 +v+s    +i+T+aH+++ ++++     +  +   ++++ ++p+   + +p          D+A++ +       +    +  +ea+ gg         
  CCE30459.1  47 VVDSKQgnIIITAAHCLSTDGTEIN--FAPGYNNGATPYGTYPVLATYINPkwnskydeTVDFAFMML---GKGMFNGTMVNVQEATGGGnrlvinagy 140
                 444443469********99999888..3333444444444444444444446666665455*******...3333444334444444444544444455 PP

   Trypsin_2  85 .epvyvvGyplggeksgsvssGivsgvvesesaasgegesfl.qtdaatspGsSGGplf 141
                  ++v +vGy  g+++  ++ss ++ + +             +     ++++G+SG+p +
  CCE30459.1 141 eQNVEIVGYAYGEQRARHCSSMTYEAKRG-----------QMgIECGPLQSGTSGAPWI 188
                 56666677755555544444444444444...........3324445777788888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2166.91
//
Query:       CCE30460.1  [L=563]
Description: uncharacterized protein CPUR_04308 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       990  (0.0552178); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4307.87
//
Query:       CCE30461.1  [L=278]
Description: uncharacterized protein CPUR_04309 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2175.79
//
Query:       CCE30462.1  [L=224]
Description: uncharacterized protein CPUR_04310 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1687.36
//
Query:       CCE30463.1  [L=911]
Description: related to alpha-glucosidase b [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-160  535.4   2.5   1.7e-160  535.0   2.5    1.1  1  Glyco_hydro_31   Glycosyl hydrolases family 31
    1.3e-38  131.7   0.0    2.6e-38  130.8   0.0    1.5  1  NtCtMGAM_N       N-terminal barrel of NtMGAM and CtMGAM, malt
      2e-16   60.1   0.4    7.3e-16   58.2   0.4    2.1  1  Gal_mutarotas_2  Galactose mutarotase-like


Domain annotation for each model (and alignments):
>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  535.0   2.5  2.8e-164  1.7e-160       1     440 []     248     804 ..     248     804 .. 0.96

  Alignments for each domain:
  == domain 1  score: 535.0 bits;  conditional E-value: 2.8e-164
                     EEEE-SSHHHHHHHHHHHH-------GGGGSEEEE-TT--SHHHHHHHHHHHHHTT--EEEEEESCGGSBTTCCTB-.TTTSS.-H.HHHHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxx RF
  Glyco_hydro_31   1 yvflGptpkevvkqyteltGrpalpPrwalGfhqsrygykdeeeveevvdkfreagiPldvivlDidymdkrkdftwdkerFp.dp.kemvdelh 93 
                     y+++Gptp +v+kqy+e+tG +  +P+ +lGfhq+r+gy+d  +v+evv ++++agiPl+++++Didym++r  f++d++rFp    +e+v++lh
      CCE30463.1 248 YFLAGPTPVDVAKQYAEITGLSVTVPYSSLGFHQCRWGYRDVFDVAEVVYNYSQAGIPLETMWTDIDYMNERAIFSVDPDRFPlRMmRELVAHLH 342
                     9**********************************************************************************9556******** PP

                     HTT-EEEEEE-SEE.E.-TTSHHHHHHHHTTSBECCCCCS.TCEC.TSSEEEEB-TTSHHHHHHHHHHHHHHHCT...CT--EEEE-STTTB.SC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31  94 ekgvklvvivdpaiskqeeeyeafdegkekgvflknkdgs.ykgk.wpgstafpDftnpearewwkkelkkflld...lgvdglwiDmnepsnfe 183
                     ++++k+v++vdpa+++++  y ++++g++k+vfl n++++ ++g+ wpg ta+pD++   +re+w +e+ +f++    ++vd lwiDmnepsnf+
      CCE30463.1 343 ANKQKYVLMVDPAVAAKD--YGPYNNGVQKDVFLLNSTNQiFHGVvWPGLTAYPDWFADGTREYWIEEFANFFSPdsgIDVDYLWIDMNEPSNFC 435
                     **************8765..**************999999888889**************************99568999999************ PP

                     CCCHH.HHCCCTS.................................................................................. CS
                     xxxxx.xxxxxxx.................................................................................. RF
  Glyco_hydro_31 184 egsds.eekeake.................................................................................. 195
                      +++  +e+ ake                                                                                  
      CCE30463.1 436 PYPCLdPESAAKEypppppavreppralsgwpcdfqpsgsnckrldleqsqslsrrspnqevahpkklgakvafeehgrlhhrssnakwmglpgr 530
                     ****987777777********************************************************************************** PP

                     ..........................CETTCC....HHHHCCCHHHHHHHHHHHHHHHHTTTST-EEEESSEETTGGGCTEEE--S-BSSHHHHH CS
                     ..........................xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 196 ..........................tkaags....hydvhnlygllmakatyeglkekkpkkrpfiltRstfaGsqryaahWsGdnassWeslr 260
                                               +    +    + d+hnlyg++m++a+++++ +++p+krp+++tRstfaG+++++ hW+Gdn s+W ++r
      CCE30463.1 531 eltnppykinntwgplpekaintsliH----HngltQFDTHNLYGTMMSEASRAAMLARRPSKRPLVITRSTFAGAGSHVSHWLGDNDSDWPHYR 621
                     ******************999976422....134579********************************************************** PP

                     HHHHHHHHH.HTTT--SEEEECT-SG.HCHHHHHHHHHHHHTTSSSEEE--STTSS--SHHHHCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH CS
                     xxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 261 esipallsf.slsGvpfwgaDigGFe.ntteelyaRWvqlGafsPffrnHsskdakrqepwafgeeveeaarkaielRyrLlPylYtlfyeahet 353
                     +si+++l+f sl++v+++g+D++GF+ ntteel+aRW++lGaf+Pf+rnH+++++  qe++++++ v+eaarkai++RyrLl+y+Yt++++++++
      CCE30463.1 622 WSISGMLQFaSLFQVSMVGSDVCGFNgNTTEELCARWAMLGAFQPFYRNHNAEGQVAQEFYRWSS-VTEAARKAIDIRYRLLDYFYTAMMQQSSD 715
                     *********9****************9************************************99.***************************** PP

                     ---SEE-HHHH-TT-CCCCC--S-EEETTTEEE----STT-SEEEEEE-SSEEEETTT--EEES.SEEEEEE--.TTSS-EEEETTEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxx RF
  Glyco_hydro_31 354 glpvvrplflefpedektfdiddqfmfGdsLLvaPvleeeatsvevyLPggkWydfwtgekyeg.gqtveltap.ldeiplfvraGaIi 440
                     g+p ++p+f+ +p+dektf +d qf++G+sLLvaPv e++atsv+vyLP++ +ydf+t+ek+ g g+tv+++ + l++iplf r+G+I+
      CCE30463.1 716 GTPAMQPMFYMYPHDEKTFGLDLQFFWGPSLLVAPVHEQGATSVDVYLPDDIFYDFHTHEKIVGsGHTVTMSNQsLTDIPLFFRGGSIV 804
                     *************************************999*********99*************65577555442567**********7 PP

>> NtCtMGAM_N  N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.0   4.4e-42   2.6e-38       1     116 []      43     155 ..      43     155 .. 0.96

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 4.4e-42
  NtCtMGAM_N   1 gltadlklagsacsvygndieelkleveyetddrlrvkItdannkryevpeellprpssssssssksdnkelevsvtnepFgfkvtRkstgevlfdtsg 99 
                 gl+adl+l+g++c+ yg+d+++l+l+v  et +rl+vkI+da+++ y+vpe ++prp++ +   +k++   l+++++++pF+f+v+R+ tgevlfd+s 
  CCE30463.1  43 GLSADLHLSGKSCNAYGKDLDNLRLQVVAETAQRLHVKIYDAAEQVYQVPEYVFPRPKAAQDGVDKAE---LKFDFKEQPFSFQVSRTTTGEVLFDSSA 138
                 689******************************************************98877766666...**************************** PP

  NtCtMGAM_N 100 gplvfedqflqlstklp 116
                 ++l+fedq+l+l+t+lp
  CCE30463.1 139 AGLIFEDQYLRLRTSLP 155
                 ***************98 PP

>> Gal_mutarotas_2  Galactose mutarotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.4   1.2e-19   7.3e-16       1      63 [.     157     221 ..     157     223 .. 0.88

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.2e-19
                      T-EEEEEES-SS-SS-TTEEE..EE-----TS-HCC.CTS-SCEEEEEEEE..TCEEEEEE--SSSE CS
  Gal_mutarotas_2   1 dehvyGlGEkagplnlrgtry..rlwntdafgyeaessdplYgsiPfmisl..segyGvfvdnpaet 63 
                      d ++yGlGE++++++l+++ y  +lwn d++++ +    +lYgs+P+++++  + ++Gvf++n+  +
       CCE30463.1 157 DTNLYGLGEHSDSFRLKTRNYtrTLWNADVPSIPNS--ANLYGSHPVYMEHrtNGSHGVFLLNSNGM 221
                      5789**************977669*******97555..7**************777*******9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 6657.64
//
Query:       CCE30464.1  [L=542]
Description: related to lysine permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.1e-128  426.8  40.2   1.1e-127  426.6  40.2    1.0  1  AA_permease    Amino acid permease
    6.3e-36  124.1  45.9    7.6e-36  123.8  45.9    1.0  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.6  40.2  1.2e-131  1.1e-127       2     474 ..      57     505 ..      56     509 .. 0.98

  Alignments for each domain:
  == domain 1  score: 426.6 bits;  conditional E-value: 1.2e-131
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  v++ia+gg iGtglf+g+g+ l+++Gp+++l++y+++g+++f++mlslge+a ++p++g+f  +a rf+++++Gf+  +ny+f++++  a++l+a++ 
   CCE30464.1  57 VQMIAIGGTIGTGLFLGTGKSLATGGPAALLICYAITGAIVFITMLSLGEMAAFIPVAGSFCSFAGRFVDDAFGFALTWNYWFNDAVSTAADLVALQL 154
                  9************************************************************************************************* PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeeeg 196
                  ++q+w  +++ p  w+ ++ f+vvl+++nl+ vk+yge e++l+l+k+i+i+ fi+vgi++++gg+++ ++ g+++++ +g+     +++g       
   CCE30464.1 155 VLQYW--TDHFP-GWALSLMFWVVLIAVNLATVKAYGELEYWLSLLKVITIVVFIVVGIVVNCGGNRQGHYiGGENWHIPGA----PFVGG------- 238
                  *****..*****.*********************************************************9***********....*****....... PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplina 294
                   + +f+svfv+++fa+ G+e++ai+agE+ +P k++P+++++v++ri++fY+ls+lligl vp++++gl ++s s+ spf i+++++g  +++++ina
   CCE30464.1 239 -IGGFASVFVTASFAYGGTESIAITAGETMNPTKNLPRVVKNVFWRILLFYILSVLLIGLNVPYDYPGLSTKSSST-SPFTIVFEMTGAHAAGSVINA 334
                  .**********************************************************************99999.********************* PP

  AA_permease 295 viltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRk 392
                  vilt++ls++n +l+++ R+ly+la++g+aP+v++k+sk++vP++a+l++ +is l++   s+  +a + +++l +++++++ + w++i ++++rfR 
   CCE30464.1 335 VILTSVLSAGNHALFAGVRLLYTLAMEGHAPRVFGKLSKNQVPWVAVLFTGLISGLCF--GSSFIGAGQLWTWLQNLVGVSNQLSWIAIGIASIRFRA 430
                  **********************************************************..55555556****************************** PP

  AA_permease 393 alkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                   l  qg+ + +l+fk +++p+g++  ++++++++l++++  + +       ++ +sf+++y+ ++++l++++++k+++++k+
   CCE30464.1 431 GLARQGKTH-LLPFKNWTYPYGPWASVFLNSFLVLVQGWSCFSP------VFDGVSFVSFYIELPIMLVMYLAWKYFKRTKF 505
                  **9999955.**********************************......88999************************987 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8  45.9   8.5e-40   7.6e-36       1     408 [.      52     475 ..      52     495 .. 0.83

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 8.5e-40
  AA_permease_2   1 lsllsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlas 94 
                    ls +++ +++ig +ig+g f  +  ++a+ggpa++l+   ++++++++ +l + E+++ +p  g   +++ ++    ++f  +w +wf  ++++a+
     CCE30464.1  52 LSARQVQMIAIGGTIGTGLFLGTgkSLATGGPAALLICYAITGAIVFITMLSLGEMAAFIPVAGSFCSFAGRFVDDAFGFALTWNYWFNDAVSTAA 147
                    56788999************99999999999996666666666666789999*****99***********************************77 PP

  AA_permease_2  95 ilsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwpgv 190
                     l+++   l+++++ ++ g+      +   + ++++++n+  +k ++ +  +l +lk+ ++++++i++g+++ +gg  + +   +++++  g p+v
     CCE30464.1 148 DLVALQLVLQYWTD-HFPGWA-----LSLMFWVVLIAVNLATVKAYGELEYWLSLLKV-ITIVVFIVVGIVVNCGGNRQGHYIGGENWHIPGAPFV 236
                    77777777777554.777764.....333467788899999*****************.8*************99988877666667888888876 PP

  AA_permease_2 191 ......llgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddei..anlsnlgsvaalffeavggkvvaiiv 276
                          ++++ ++ ++++G es+a  + e  +++k++p++  +++  +l++y+l  +++   vp d+   ++ s++ s+++++fe++g+ ++ +++
     CCE30464.1 237 ggiggfASVFVTASFAYGGTESIAITAGEtmNPTKNLPRVVKNVFWRILLFYILSVLLIGLNVPYDYPglSTKSSSTSPFTIVFEMTGAHAAGSVI 332
                    565554778888*****************86667*********************999999999999866444556789***************** PP

  AA_permease_2 277 vilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalil 372
                    +++i  s+l a+n a+++  r+l+ la +g  Pr+f k +k++ p++a+ +t ++s +++  + ++ +   ++l ++  +++ +s++++ i+ +  
     CCE30464.1 333 NAVILTSVLSAGNHALFAGVRLLYTLAMEGHAPRVFGKLSKNQVPWVAVLFTGLISGLCFGSSFIGAGQLWTWLQNLVGVSNQLSWIAIGIASIRF 428
                    ********************************************************9998766666699999************************ PP

  AA_permease_2 373 rkkrphlkr...............pgkilvaiigalfllfllvalffppkg 408
                    r    ++++               ++ + ++ + +l+      + +f p+ 
     CCE30464.1 429 RAGLARQGKthllpfknwtypygpWASVFLNSFLVLVQ----GWSCFSPVF 475
                    *9999997778988777666333222234444444444....444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4171.24
//
Query:       CCE30465.1  [L=705]
Description: uncharacterized protein CPUR_04313 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-14   51.1   3.1      2e-13   50.0   3.1    1.5  1  Fungal_trans  Fungal specific transcription factor domain
    0.00076   19.5  17.4     0.0015   18.6  17.4    1.5  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   3.1   2.2e-17     2e-13       2     187 ..     149     334 ..     148     342 .. 0.78

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 2.2e-17
  Fungal_trans   2 drffsnfhpqfpilhkpsflpkt.....ssenssksayaspllllailalGalfsesetkesnssltses....qefiafplraeilihedfsspss 89 
                   + f  n++ q++il   sfl+++     s +++++   + ++lll+++a   + ++ e +++  +    s    +e+++   r     h    + s+
    CCE30465.1 149 QNFLNNVNFQYHILYTSSFLEEYrawwtSRSEDRPLGLQWTCLLLTVCACSTQHTDAELQRKLETDLGQSthklAEQYHNAAREL---HSVIPVRSN 242
                   679999*****************55555555555555555555555555555555555555544444444655544443333332...556788999 PP

  Fungal_trans  90 slwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLP 186
                   +l  +qsLl+ +++     +    + +++ a+r a++lg h++            +e+++e+rrR+w+    +D +i++ l rp ++d s+ ++ LP
    CCE30465.1 243 HLLNVQSLLHSCFWYRSEARFVESWHVLSAAIREAQELGIHKETVTGP------MPEFDREMRRRVWCILDTWDWQISSLLSRPMIIDRSDCDVGLP 333
                   9*******************999******************8876655......99999************************************** PP

  Fungal_trans 187 c 187
                   +
    CCE30465.1 334 N 334
                   8 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6  17.4   1.7e-07    0.0015       2      38 ..      14      51 ..      13      53 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.7e-07
                S-HHHHHCT---STSSSS-HHHHHCT..HHHCCCCTCCC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkkln..leCtfysessk 38
                aC++C ++K KC+++ P C +C+k+    +C f + s++
  CCE30465.1 14 ACTECQRRKQKCNREWP-CNHCQKRKvaDKCCFSPSSTQ 51
                9****************.********9999*96666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4932.29
//
Query:       CCE30466.1  [L=688]
Description: uncharacterized protein CPUR_04314 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-33  114.2   0.0    9.1e-33  113.6   0.0    1.3  1  CLP1_P    mRNA cleavage and polyadenylation factor CLP1 P-loo
  ------ inclusion threshold ------
       0.07   13.4   0.0       0.19   12.0   0.0    1.7  1  AAA_22    AAA domain


Domain annotation for each model (and alignments):
>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0     1e-36   9.1e-33       1     188 []     243     433 ..     243     433 .. 0.82

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 1e-36
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgr...kpv.yvDlDvGqseispPgtislalverpi......dveegfsl..dapl.vyffGdtspsdnpslylalvke 86 
                 Gpk +GKST+arlL N++l  +    k v ++DlD+Gq+e++pPgt+sl  v+ p       +  ++f    +  +  +   + +p ++p+l++a+  +
  CCE30466.1 243 GPKSAGKSTFARLLTNRLLTTSLgdsKAVmVLDLDPGQPEFAPPGTLSLIRVSLPNlgvpftH--TSFGDpgNTIVrCHALASVTPASSPDLFIACAID 339
                 9*****************965422244445************************997878542..3333222333314666****************** PP

      CLP1_P  87 lareveekleenkkakasgliIntpGwvkglgaellleliealepdvvvvldqeellnelkrdlplskvkvvklpkspgvvqrsreerrelreerireY 185
                 l++ ++ +      +++ +liIntpGw+ g g++ll++li  l+p++v+++++e     ++   + ++ ++ +lp++p      + + ++ r++++++Y
  CCE30466.1 340 LYEFYQ-R-----LHRKCPLIINTPGWILGTGLDLLVALITKLRPTQVIYMSEEGPTDVVETLQEATRHEFSTLPSQPSD--VMSRTSAHFRSMQMMSY 430
                 ******.4.....45579**********************************9888777777777888888899888775..445566799******** PP

      CLP1_P 186 Fyg 188
                 F++
  CCE30466.1 431 FHS 433
                 *95 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.1e-05      0.19       4      31 ..     235     262 ..     231     302 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqlde 31 
                 ++++++++G++ +GK+t +r l+++l  
  CCE30466.1 235 NEYSGFICGPKSAGKSTFARLLTNRLLT 262
                 67899*******************9954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4969.08
//
Query:       CCE30467.1  [L=719]
Description: related to SRP40-suppressor of mutant AC40 of RNA polymerase I and III [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-41  141.7   8.7    3.3e-41  141.7   8.7    5.6  5  RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5


Domain annotation for each model (and alignments):
>> RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6  18.1      0.56     1e+04     120     192 ..      57     138 ..      42     151 .. 0.48
   2 ?  -10.0  19.1         1   1.8e+04     145     195 ..     154     219 ..     134     229 .. 0.44
   3 ?   -7.5  16.4         1   1.8e+04     132     192 ..     242     300 ..     223     321 .. 0.36
   4 !  141.7   8.7   1.8e-45   3.3e-41       2     202 ..     356     566 ..     355     591 .. 0.79
   5 ?   -6.8  15.0         1   1.8e+04     172     196 ..     669     698 ..     573     707 .. 0.52

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.56
                   XXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXX.........XXXXX CS
  RNA_polI_A34 120 Gsgdgppgtigssseesegekekkkkpkakkkekkkkkkkaaeede..eeeapkkkkkkkkkkkekkeee.......kkeek 192
                   Gs+d++ +++gss+e ++   +  +k+ +++++++k+ k ++  d+  e +a   k+ + +k ++ k e+       + +e+
    CCE30467.1  57 GSSDDDSSSSGSSDEGDHFLRNITSKSVKASNATSKQNKDDEIADSddERKAAANKTASGSKMQSVKRENssedeasDDSES 138
                   6777788888888887555555444444444444444444444442222333333333333333333222222222322222 PP

  == domain 2  score: -10.0 bits;  conditional E-value: 1
                   X................XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX..XXXXXX.. CS
  RNA_polI_A34 145 k................pkakkkekkkkkkkaaeedeeeeapkkkkkkkkkkkekkeeekkeekeee 195
                                     +++ + +k++++++++e+ e++++++  +  +++ + ++e+++ee+e+e
    CCE30467.1 154 GgrslkpaatsgkrpskTASAPQLRKEESESDSNEN-EAPEKREAAQPMSDDNSSEGESDAEEDEDE 219
                   033444333334333223444444444444444444.444444444444555555544444444433 PP

  == domain 3  score: -7.5 bits;  conditional E-value: 1
                   .........XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX..XXXXX CS
  RNA_polI_A34 132 sseesegekekkkkpkakkkekkkkkkkaaeedeeeeapkkkkkkkkkkkekkeeekkeek 192
                   ss e+++++e+++k  ++ + k+ +kk   ++++++   k+++k  ++  +++++++++++
    CCE30467.1 242 SSGEEHSDDEEAEK--SPVPVKSLNKKTPVKSSNKKTPVKPSSKTVEQPPSAQVSDESSSE 300
                   22222333333333..222222222222222221122222233333333333322211111 PP

  == domain 4  score: 141.7 bits;  conditional E-value: 1.8e-45
                   TTEEEEEEEEETTS-GGG-S..EE---SSCSEEEE.EETTEEEEEEEGGGCS-GTTEEEEEE-SSSTB-TTSS-B-SEEEEEEE--XXXXXXXXXX. CS
  RNA_polI_A34   2 egkelWlIkaPasvpikslegvevplsgvqtgksvlshkgqdYgiledsdeeekggerlLlpdkkkdgyelaakpisrtlnisevvqlpstdaepaa 98 
                   +gk++W++++Pa+vpi++++++e+p++++++ + v+sh+++dYgi++ds    k+++++L+p+  + +y++a+k+i+++++++++ ql  ++  +  
    CCE30467.1 356 QGKQVWYFTVPANVPISVVQNMEIPMNQSNRDDRVFSHDDEDYGISFDSM-VPKSSIQILIPSADGVQYQSAPKQINQVMHVKKIAQLGRGNLRALP 451
                   8************************************************9.46***************************************55555 PP

                   ..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXX............XXXXX........XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX CS
  RNA_polI_A34  99 s.vvpkp.prpqpkgLkmRFkPfGsgdgppgtigssseesegekekkkk........pkakkkekkkkkkkaaeedeeeeapkkkkkkkkkkkekke 185
                   s ++pk+  r qpkg+k R++PfG+++g ++  g+++++ + + +++++        p+++k +kk kkkk+  +d   ++ +k k k  ++ e++ 
    CCE30467.1 452 SePAPKEpCRAQPKGMKLRYQPFGVNTGMGQIGGDEESDIDVDVDMVDApaaavpptPATSKADKKDKKKKQNSQD--VDTARKGKRKLTSEDEAAA 546
                   557777725777**************86666555555554555555555677777777777777777777777777..7777776666666666665 PP

                   .....XXXXXX...XXXXXX CS
  RNA_polI_A34 186 ee...kkeekeeeskkskkk 202
                   ++   + e++++ + kskk+
    CCE30467.1 547 AAeqlQGESQSAAKVKSKKQ 566
                   44445444444444444444 PP

  == domain 5  score: -6.8 bits;  conditional E-value: 1
                   XXXXXXXXXXXXXX.......XXXXXX... CS
  RNA_polI_A34 172 kkkkkkkkkkekkeee.....kkeekeees 196
                   k +kk k kkekke+      ++++ ++ +
    CCE30467.1 669 KDSKKAKAKKEKKEKPaasttRQSPPPSAQ 698
                   222222222222222211222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1779  (0.0992247); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                        76  (0.00423894); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.97u 0.33s 00:00:02.29 Elapsed: 00:00:00.58
# Mc/sec: 3752.50
//
Query:       CCE30468.1  [L=412]
Description: probable aureobasidin-resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-25   87.5   9.4    1.3e-24   86.9   9.4    1.2  1  PAP2_3    PAP2 superfamily
    6.5e-09   35.7   4.4    1.6e-08   34.4   4.4    1.8  1  PAP2      PAP2 superfamily


Domain annotation for each model (and alignments):
>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   9.4   1.5e-28   1.3e-24      18     189 ..     102     280 ..      89     281 .. 0.83

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 1.5e-28
      PAP2_3  18 lnklllahpa.lavilala.Yaslhfqvtllvlvllf.lrrrerlreflttlllatllgllvyalfPaagPrlleeagfvdtvaaaslag......alr 107
                 l ++l ah + + +ila+  Y ++hf ++ +  +l+f ++ +     f++t+ ++ +lg+++ + fP+++P++ +++g+v +   ++ +       +  
  CCE30468.1 102 LSNILSAHKHaILDILAWLpYGIIHFGAPAACSLLMFiFAAPGTTPVFARTFGWMSILGVTIQLIFPCTPPWYEDQNGLVPAAYGMKGSPagleriD-- 198
                 44566677666999999999***************************************************99988888887777777775444441.. PP

      PAP2_3 108 dgasravllrgtienglaa.......fPSlHvawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalalvaia 189
                      ++ + +  ++ + a       fPSlH ++a+l al++ +  ++   r++++ ++ +++++t+++ +HY++D+++G ++a++ ++
  CCE30468.1 199 -----KIFGIDLYTSNFTAaplpfgaFPSLHGGYAVLEALFMSHCFPQF--RMFFIGYVGWIWWSTMYLSHHYAIDLVGGGLIAAAFFY 280
                 .....333333333333333444444*********************99..**********************************9886 PP

>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   4.4   1.8e-12   1.6e-08      49     126 ..     206     281 ..     131     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 1.8e-12
        PAP2  49 s.......keakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRlylgvHflsDvlaGlliGialaal 126
                           ++  fPS H   a++ al++++ +++ r +         ++ ++ ++++s +yl +H+  D+++G li++a+++ 
  CCE30468.1 206 YtsnftaaPLPFGAFPSLHGGYAVLEALFMSHCFPQFRMF---------FIGYVGWIWWSTMYLSHHYAIDLVGGGLIAAAFFYS 281
                 044444433456789*************************.........9*******************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3211.07
//
Query:       CCE30469.1  [L=412]
Description: probable calmodulin-dependent protein kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-72  242.3   0.0    6.7e-72  242.0   0.0    1.1  1  Pkinase         Protein kinase domain
    1.3e-28  100.0   0.0    1.7e-28   99.6   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
      3e-07   30.0   0.0      4e-07   29.6   0.0    1.2  1  Kinase-like     Kinase-like
    8.7e-05   21.5   0.0    0.00019   20.4   0.0    1.5  2  Pkinase_fungal  Fungal protein kinase
    0.00059   19.3   0.0    0.00097   18.5   0.0    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0006   19.8   0.1     0.0011   19.0   0.1    1.4  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.0   0.0   2.3e-75   6.7e-72       1     264 []      16     277 ..      16     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 242.0 bits;  conditional E-value: 2.3e-75
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk..hpnivrlyevfeekdelylvleyveggeladllerkgslse 97 
                 y++ ++lG Gs+++V ++v+ +tg+ +A K+i+k+ +  +++  v++Ei++lkk++  h+ni++l+++fe+ ++lylv++++ ggel+d++ rkgs+ e
  CCE30469.1  16 YKVGKTLGAGSYSVVKECVHIDTGRYYAAKVINKRLMAGREH-MVRNEIAVLKKVSmgHQNILTLVDYFETMNNLYLVTDLALGGELFDRICRKGSYYE 113
                 78899*********************************9887.9************9****************************************** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE...EEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekge...lKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyell 191
                 ++a ++++ +l++++ylH++gi+HrDlKpeN+L+ + ++   l i+DFGl++ +++++   lt+ +gt+ Y+APE+ k+++++k+vD+W+lGvi y ll
  CCE30469.1 114 SDAADLIRATLSAVAYLHDHGIVHRDLKPENLLFRTPEDnadLLIADFGLSRIMDEEKFhvLTTTCGTPGYMAPEIFKKTGHGKPVDLWALGVITYFLL 212
                 **********************************95333467**************99899************************************** PP

                 HSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 192 tgkppfsgekgkekvekeldqlekilkilg..etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 +g +pf  +++ e       +   ++ il+   +   ++ ++ +s+eak++++++l++d++kR+ta+e+lqhp++
  CCE30469.1 213 CGYTPFDRDSDFE-------E---MQAILNadYSFTPIEYWRGVSNEAKEFVRRCLTVDHTKRITAHEALQHPFV 277
                 *******444433.......3...33444433445678999********************************96 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.0   5.7e-32   1.7e-28       2     254 ..      17     270 ..      16     274 .. 0.88

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 5.7e-32
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS..-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl..khpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  ++gk+lG+G+++ V e+       ++    a K+++++ ++ +++++ +e++++kk+   h+ni+ l+      ++l++vt+++ gG+L + + +k  
   CCE30469.1  17 KVGKTLGAGSYSVVKECVHI----DTGRYYAAKVINKRLMAGREHMVRNEIAVLKKVsmGHQNILTLVDYFETMNNLYLVTDLALGGELFDRICRK-- 108
                  5789*************999....6777788888888888888899999*******9778**********************************98.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfG 192
                   +   +d  +++    ++++yL+++ +vHrdl   N L ++   n    i+DfGL+r + ++++ ++ +++     +mapE++k++   +  D W+ G
   CCE30469.1 109 GSYYESDAADLIRATLSAVAYLHDHGIVHRDLKPENLLFRTpedNADLLIADFGLSRIM-DEEKFHVLTTTCGTPGYMAPEIFKKTGHGKPVDLWALG 205
                  8999999********************************976658899*********87.7777777777778889********************** PP

                  HHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTT...SBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 193 vllwEiftlgespypglkneevlekl.kegkrlekpek...cpeelyelmkkcweedpeeRptfse 254
                  v+++ +++ g +p+ + ++ e ++++ ++++  +  e+   +++e +e++++c++ d ++R t +e
   CCE30469.1 206 VITYFLLC-GYTPFDRDSDFEEMQAIlNADYSFTPIEYwrgVSNEAKEFVRRCLTVDHTKRITAHE 270
                  ****9999.*****999666666655488887655554111789*****************99776 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.4e-10     4e-07     105     255 ..      74     223 ..      59     265 .. 0.68

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.4e-10
  Kinase-like 105 esiywvvnallllpaa..svdl....eilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllld...ekgglmlggft..aL 191
                  ++i ++v++++ + +   ++dl    e++  +  k s  +   +++ r+ l       +a+L+++g+vh +++++nll+     +  l + +f+   +
   CCE30469.1  74 QNILTLVDYFETMNNLylVTDLalggELFDRICRKGSYYESDAADLIRATL-----SAVAYLHDHGIVHRDLKPENLLFRtpeDNADLLIADFGlsRI 166
                  566666666666665422566633323333333333333555555555555.....459********************63225789****9962144 PP

  Kinase-like 192 vragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlate 255
                  +   +  vl +++   g+  pE++ + g            ++d W+lG+  y++ c + P++ + +
   CCE30469.1 167 MDEEKFHVLTTTCgtPGYMAPEIFKKTG---------HGKPVDLWALGVITYFLLCGYTPFDRDSD 223
                  4455555558887788999999998844.........4679********************98764 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   6.3e-08   0.00019     317     396 ..     125     200 ..     113     204 .. 0.83
   2 ?   -3.7   0.0       1.3   3.8e+03     306     326 ..     301     320 ..     292     358 .. 0.53

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 6.3e-08
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhD 396
                      +   L+ + gi+HrD   +N+l+  +  e++   l++D+ l   +++ ++ ++  +  GT+ +ma e+ k++ H    D
      CCE30469.1 125 SAVAYLH-DHGIVHRDLKPENLLFRTP--EDNADLLIADFGLSRIMDE-EKFHVLTTTCGTPGYMAPEIFKKTGHGKPVD 200
                     4556799.*****************55..556788999*****99997.6666889***************998976655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.3
  Pkinase_fungal 306 kellealrDaIkghrsLflka 326
                     ++ l+a +D +++ ++L  +a
      CCE30469.1 301 RRTLHAAIDTVRAINKLR-EA 320
                     444444444444444444.22 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.2e-07   0.00097     115     167 ..     111     162 ..      59     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.2e-07
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 + e+  + l++a+  ++a lh+ g+ H+dl + n+l+++ e ++a + + D+ 
  CCE30469.1 111 YYESDAADLIRATLSAVAYLHDHGIVHRDLKPENLLFRTPE-DNADLLIADFG 162
                 5566667788888899************************8.99999999996 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   3.5e-07    0.0011     152     200 ..     119     168 ..      77     169 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.5e-07
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC...TTEEEEE---TT-EEEE CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvd.pddgrvtGviDfedaglgp 200
                 +++a +  ++   +++++H+Dl+p Nll++ p+d+    + Df+++++++
  CCE30469.1 119 LIRATLSAVAYLHDHGIVHRDLKPENLLFRtPEDNADLLIADFGLSRIMD 168
                 333333333337899****************5555554599**9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 3432.77
//
Query:       CCE30470.1  [L=195]
Description: uncharacterized protein CPUR_04318 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-13   49.1   4.4    7.3e-13   48.5   4.4    1.3  1  RF-1      RF-1 domain


Domain annotation for each model (and alignments):
>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   4.4   4.1e-17   7.3e-13      15     115 ..      67     189 ..      60     191 .. 0.72

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 4.1e-17
                 EEE---SSSSSSGCSSSCEEEEEETTT........................TEEEEEEECSSSHHHHHHHHHHHHHHHHHH...HHHHHCCCCCHTTTT CS
        RF-1  15 dtfrssGaGGQnVNktesaVrlthlpt........................gvivvecqeeRsqekNrekAlerLkaklke...keleeekeeekkrrv 86 
                 +++rssG+GGQ+VNkte++++ ++  +                        +++  + q++Rs+ +N  + +++L +++ +   +    e++eekk++ 
  CCE30470.1  67 TYARSSGPGGQHVNKTETKATTVYGVKellsllpknmhssirtsryyvassDSLQFQEQSQRSRTANETRNRRKLVDEITRiykATTPAETSEEKKKKY 165
                 789*******************773335677888899999999******996799************************77421222223333333332 PP

                 T-.S.-S---S.--ECEEEECGCTTEEEET CS
        RF-1  87 kkekkkigtgs.sekiRtynkkpqsrvkdh 115
                 +      + g+  ++ R ++kk +s  k+ 
  CCE30470.1 166 E------ALGKiFHETRIKQKKFKSAKKQS 189
                 2......23444455555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1584  (0.0883485); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1560.58
//
Query:       CCE30471.1  [L=823]
Description: related to RNA-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-09   37.8   0.0    2.2e-09   37.0   0.0    1.4  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
      3e-05   23.6   0.0    6.6e-05   22.5   0.0    1.5  1  RRM_5     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   2.5e-13   2.2e-09       1      70 []     355     418 ..     355     418 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 2.5e-13
                 EEEESE.TTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnL.ppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +f+gnL +  v+++++ +lF  +G+   i+l +        ++fV++++ e+ + A+e+l+g++++gr+++
  CCE30471.1 355 IFIGNLsSDKVSKRDVFDLFYRYGRLAQISLKS-------AYGFVQYHTAEEGRGAMENLQGTEIKGRRIH 418
                 8*****7777****************9999999.......7***************************996 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   7.3e-09   6.6e-05      23     114 ..     349     437 ..     334     441 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 7.3e-09
       RRM_5  23 vaegsVllVyglepdkvnldklFnlfclYgnvervkflktkketalvqmgdasaveravqHLnnaklfgkrlevalSKqqavsekepfeled 114
                  ++gs +++ +l  dkv    +F lf  Yg ++++ +   k  + +vq   a +   a++ L+++++ g+r+++ +S+ q  s+k+ +  +d
  CCE30471.1 349 FPDGSRIFIGNLSSDKVSKRDVFDLFYRYGRLAQISL---KSAYGFVQYHTAEEGRGAMENLQGTEIKGRRIHLEISRLQDKSKKDRHRSPD 437
                 57889999************************99975...78899*********************************99888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1214  (0.0677115); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.34s 00:00:01.15 Elapsed: 00:00:00.46
# Mc/sec: 5393.43
//
Query:       CCE30472.1  [L=588]
Description: related to ferric reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-17   61.9  15.1    1.1e-16   61.0  15.1    1.5  1  Ferric_reduct  Ferric reductase like transmembrane component
    2.6e-15   56.9   0.0    4.5e-15   56.1   0.0    1.4  1  NAD_binding_6  Ferric reductase NAD binding domain
    7.7e-09   35.6   0.0    3.8e-08   33.4   0.0    2.0  1  FAD_binding_8  FAD-binding domain
  ------ inclusion threshold ------
      0.027   15.1   0.0        4.1    8.1   0.0    2.3  2  NAD_binding_1  Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0  15.1   2.6e-20   1.1e-16       1     124 [.     144     261 ..     144     262 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 2.6e-20
  Ferric_reduct   1 lGiaalillplalllalRn.nflepltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilai 95 
                    lG++a+++lp+++ll+l++ n+++++++ s+++ +++H++lg+++  l+llH ily  +f+        +++  +++++ + +G++a l l  l++
     CCE30472.1 144 LGAIAVSQLPIQYLLSLKSlNPFAWVFKSSHEHINRYHRVLGRIIYGLVLLHLILYNAYFIY------AGIWLRRIFEFVVFCGLIASLGLHGLIA 233
                    699*************9998****************************************97......89************************** PP

  Ferric_reduct  96 tSlkfirrrlsyelFyylHhllyvaylll 124
                    tS+++ r +lsy+lF+++H++++v++ +l
     CCE30472.1 234 TSTHIAR-QLSYRLFFITHVAVAVLMPVL 261
                    *******.****************99876 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0     1e-18   4.5e-15       2     154 ..     429     568 ..     428     570 .. 0.85

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1e-18
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   2 envllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyeaedasdqlissiegense 97 
                    + vllv+gG+G+t++++i   l  +         k ++iw++r+ ++  w  d  +++ +     + +ih +lT  ++a+d+s+  +s + g +++
     CCE30472.1 429 DRVLLVSGGVGATFTLPIYHALKSEVP-----SAKRHFIWAIRSFEDTAWAVDPGKTILD-----DPNIHLFLTAGTTAPDNSEDATSENGGVELS 514
                    679***************999988876.....88999**************955553332.....4579***************999998888887 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  98 slkqgvdavsgtrnvkihfgRPnlkevlkdiaskhknssvgvfvCGppklvkevkkl 154
                     l  +  +  g    ++h +RP++++++ d  +++ ++sv+v+vCGp  ++++v++ 
     CCE30472.1 515 TLPLN--IGRGN-TSNLHRKRPDIQKIVDDTFRHNVGESVAVLVCGPVDMTRDVRSR 568
                    77755..22222.379**************************************985 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   8.5e-12   3.8e-08      14     107 ..     304     415 ..     294     417 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 8.5e-12
  FAD_binding_8  14 edliklkvskpkks...lkykaGqyvyinipslskl...........fwqsHPFtiasape.ddklslvikvksgltkklakkllsssk...kele 91 
                    + l+k++ s p +s   +++++G+++y++ip+ s+             +   PFt+a+a e +  +slv++v++g  + + + ++s+s     e++
     CCE30472.1 304 TTLLKITSSLPAHSvakFRATPGSHIYLSIPPSSRTdtvpsskstvvDLLFNPFTVATADEkNGTISLVVRVRKGPLTTILSDFSSASAtpaSEPS 399
                    56778888888877778*************8887766666555554446679******998899***********988888888888667889999 PP

  FAD_binding_8  92 nkkaklkvlidGPYGa 107
                    ++++k++++i GPYG+
     CCE30472.1 400 TEARKTTLAILGPYGT 415
                    ***************8 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0096        43       1      42 [.     433     473 ..     433     517 .. 0.82
   2 ?    8.1   0.0   0.00091       4.1      88     108 ..     546     566 ..     518     567 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0096
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTT CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedlly 42 
                    +++gG+G + ++ + +a+  e  +  k ++++++r+ ed + 
     CCE30472.1 433 LVSGGVGATFTLPIYHALKSE-VPSAKRHFIWAIRSFEDTAW 473
                    79*****************99.778999*******9998765 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00091
                    HSSTTEEEEEECSHHHHHHHH CS
  NAD_binding_1  88 lkkeethvyvCGppgMikavr 108
                       e++ v+vCGp  M ++vr
     CCE30472.1 546 NVGESVAVLVCGPVDMTRDVR 566
                    3467999***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4604.20
//
Query:       CCE30473.1  [L=481]
Description: probable glycine hydroxymethyltransferase,cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-205  682.1   0.0   2.1e-205  681.9   0.0    1.0  1  SHMT             Serine hydroxymethyltransferase
      5e-06   25.9   0.0      9e-06   25.1   0.0    1.4  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.064   12.5   0.0      0.087   12.1   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
       0.11   11.0   0.0       0.17   10.4   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  681.9   0.0  4.7e-209  2.1e-205       3     399 .]      21     418 ..      19     418 .. 1.00

  Alignments for each domain:
  == domain 1  score: 681.9 bits;  conditional E-value: 4.7e-209
                 HHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHHHH CS
        SHMT   3 esdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqanla 101
                 +sdpeva+i+k+e +rq+e+i liasen+ts+av++alGs ++nky+eGyPG+ryyGG++++d++e l+q+ra+++f+ld +kwgvnvq+lsGs+anl+
  CCE30473.1  21 DSDPEVASIMKDEIQRQRESIILIASENITSRAVFDALGSPMSNKYSEGYPGARYYGGNQHIDQIELLCQRRALQAFHLDSEKWGVNVQCLSGSPANLQ 119
                 79************************************************************************************************* PP

                 HHHHHT-TT-EEEEESCTTTSTGGGT-BTSS-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT-EE CS
        SHMT 102 vytallepgdrilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevgayl 200
                 vy+a++ p++r++gldl++GGhl+hG+++ ++kisa+s++fe+++++v+ etg+idyd+l ++a +++Pk++v Gtsay+rlidy+r+reiad+vgayl
  CCE30473.1 120 VYQAIMPPHGRLMGLDLPHGGHLSHGYQTPQRKISAVSTYFETMPFRVNLETGIIDYDQLAQNAVLYRPKVLVVGTSAYCRLIDYKRMREIADSVGAYL 218
                 *************************************************************************************************** PP

                 EEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEE.TTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSHHH CS
        SHMT 201 lvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvd.ktgkevleelekkinsavfPglqGGPlnhviaakavalkealepef 298
                 +vdmahi+Gl+aa+vip+Pfeyad+vtttthk+lrGprg++i++rkgv+svd k+gke+l++le  in++vfPg+qGGP+nh+i+a+avalk+a +pef
  CCE30473.1 219 MVDMAHISGLIAAEVIPTPFEYADIVTTTTHKSLRGPRGAMIFFRKGVRSVDaKSGKETLYDLEGPINFSVFPGHQGGPHNHTITALAVALKQAQTPEF 317
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTSSTTTT-SEEEEESHHHHHTT--HHHHHHHHH CS
        SHMT 299 kvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgdksalvtsGlrlGtpaltsrgfkeedlekvak 397
                 k+yq++v++nak+l++++k+ g+klv++Gtd+h+vl+dlr++ ldG+r e+vle++ni++nkn++Pgdksal++ G+r+Gtpa+tsrgf+e+d+e+v+k
  CCE30473.1 318 KAYQEKVISNAKTLENTFKSLGHKLVADGTDSHMVLLDLRQHSLDGARLEAVLEQINIACNKNSIPGDKSALTPCGIRIGTPAMTSRGFGEKDFERVGK 416
                 **************************************************************************************************9 PP

                 HH CS
        SHMT 398 fi 399
                 +i
  CCE30473.1 417 YI 418
                 97 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0     2e-09     9e-06      66     353 ..     103     403 ..      74     406 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2e-09
                    TGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEET.TTTEE-HHHHHHHHTTHHCTTE..TEEEEEEESS- CS
  Aminotran_1_2  66 kreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyse.edfhldlealeealkeapegnk..ktkvilvesph 158
                    k  ++v+++sG+ a++++  +++  ++g+   ++ p  ++ +++ +  + ++  +++y e   f+++le  + ++++++++ +  ++kv++v +  
     CCE30473.1 103 KWGVNVQCLSGSPANLQVYQAIM-PPHGRLMGLDLPHGGHLSHGYQTPQRKISAVSTYFEtMPFRVNLETGIIDYDQLAQNAVlyRPKVLVVGT-- 195
                    4456999****************.5889888888888888899999999999999988776889999999999999998888899999999974.. PP

                    TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTT.SSGGG-EEEEEEEH........HHHHHHHH CS
  Aminotran_1_2 159 NPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKaf.GlaGeRvGyilgna........avvsqlrk 245
                        + + l +++ + ++a++ +++l+vD+a+  +   +    +++++  e+ + +++++  K++ G  G   ++i+  +          +++l +
     CCE30473.1 196 ---SAYCRLIDYKRMREIADSVGAYLMVDMAHISGLIAA----EVIPTPFEYAD-IVTTTTHKSLrGPRG---AMIFFRKgvrsvdakSGKETLYD 280
                    ...556666666666666*******************93....45888888877.999999998744444...66666667777777888899999 PP

                    HHHHHTS..........SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..TEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCT CS
  Aminotran_1_2 246 lsrpfls..........ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael..glkvlasqsgmflltdlsaetakelskkLleevg 329
                    l  p+++           +++  a+a al+ a+    e+++ ++++++++k+l + +++l   l   + +s+m+ll +  ++ + +  ++ le+ +
     CCE30473.1 281 LEGPINFsvfpghqggpHNHTITALAVALKQAQT--PEFKAYQEKVISNAKTLENTFKSLghKLVADGTDSHMVLLDLRQHSLDGARLEAVLEQIN 374
                    9999999888988777667777777777777774..4***********************5555555667******99999999999999****** PP

                    EEEEEGGGGTS.....TTEEEEECTTS-H CS
  Aminotran_1_2 330 vyvtpgtsftv.....pgrlRitvAglte 353
                    +++ ++++++      p  +Ri  +++t+
     CCE30473.1 375 IACNKNSIPGDksaltPCGIRIGTPAMTS 403
                    *********98888877778998888875 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.9e-05     0.087     148     216 ..     202     318 ..      61     432 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
                      HHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-HH............................ CS
  Beta_elim_lyase 148 eelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvGgvlafrddel.......................... 215
                         +++++ia++ g  l++D A +     + +e + + f+y+D+vt    K l  + G++++fr+                             
       CCE30473.1 202 IDYKRMREIADSVGAYLMVDMAHISGLI-A-AEVIPTPFEYADIVTTTTHKSLRGPRGAMIFFRKGVRsvdaksgketlydlegpinfsvfpgh 293
                      445677889999999******9987655.3.44455678*************************985466667777776666666666666666 PP

                      ......................... CS
  Beta_elim_lyase 216 ........................e 216
                                              +
       CCE30473.1 294 qggphnhtitalavalkqaqtpefK 318
                      6666666666666666666665552 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   3.8e-05      0.17     108     205 ..     160     257 ..     154     273 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.8e-05
                      HHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-...GGGGT.-SEEEEETT CS
  Cys_Met_Meta_PP 108 lkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqr...plklg.aDivvhSaT 197
                      ++++  ++++e+ ++d ++l++ +   ++++ +v     t+  ++++D +++ ++a ++g+ ++vD + +s+l+     p  ++ aDiv+  + 
       CCE30473.1 160 FETMPFRVNLETGIIDYDQLAQNAVLYRPKVLVV----GTSAYCRLIDYKRMREIADSVGAYLMVDMAHISGLIAAeviPTPFEyADIVTTTTH 249
                      5556666777777777777777666666665555....467899****************************76532225566679******99 PP

                      TTTTCSSS CS
  Cys_Met_Meta_PP 198 KylgGhsd 205
                      K l G   
       CCE30473.1 250 KSLRGPRG 257
                      99999655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3601.91
//
Query:       CCE30474.1  [L=1175]
Description: related to transcription regulator SPT7 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-19   68.6   0.2    1.1e-18   67.0   0.2    1.9  1  Bromodomain     Bromodomain
    5.7e-11   42.3   0.3    1.6e-10   40.8   0.3    1.7  1  Bromo_TP        Bromodomain associated
     0.0054   17.1  11.0       0.01   16.2   0.4    3.5  3  PBP1_TM         Transmembrane domain of transglycosylase PBP1
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.031   14.4   0.0    1.7  1  Bromo_TP_like   Histone-fold protein
      0.016   14.8   0.4      0.054   13.1   0.1    2.0  2  DUF3562         Protein of unknown function (DUF3562)
       0.42   10.9   9.3        6.3    7.1   0.2    3.8  3  DUF4611         Domain of unknown function (DUF4611)


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.2   3.8e-22   1.1e-18       1      80 [.     329     410 ..     329     414 .. 0.91

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 3.8e-22
                  HHHHHHHBHTTT.CGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSH.TTSHHHH CS
  Bromodomain   1 lekilsellehk.laepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyng.egsviye 80 
                  lek+l+el+ h   + pFl  v+++e pdyy++ik P+dL  + kkl+s +Yks +df  dl+l+++N+ kyn+  +s++  
   CCE30474.1 329 LEKVLTELKAHTeYSTPFLTRVNKREAPDYYTFIKTPMDLGSMTKKLKSLTYKSKTDFVIDLNLIWDNCLKYNQdMNSPLRR 410
                  6899********66779********************************************************966666655 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.3   5.3e-14   1.6e-10       4      56 ..     785     837 ..     783     843 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 5.3e-14
                 HHHHHHHHHHHHHHHHT-SEE-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSS- CS
    Bromo_TP   4 arsllkvvvsqileeaGfdsaeesaLEtLteiaqkYirelgeqaksfaehagR 56 
                 ++++lk++v++il++ Gf+++++sa++tLt+ia++Y ++l ++ k + e++  
  CCE30474.1 785 CQNALKRSVAKILYHTGFEEMQPSAMDTLTDIAADYFQKLVKTFKTYREAEKA 837
                 8899*******************************************987765 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4   3.5e-06      0.01      22      71 ..     114     158 ..     103     164 .. 0.55
   2 !    5.8   1.2     0.006        18      28      70 ..     441     477 ..     426     481 .. 0.56
   3 ?   -2.4   0.1       2.2   6.6e+03      45      72 ..     567     594 ..     558     597 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.5e-06
     PBP1_TM  22 rkkasrrrrrdddyddeyddeedDdddddeeeevprkgkkkkpprkkrrw 71 
                   k+ +r  ++ddydd    + dD+++++ e +v+  g + + p+   + 
  CCE30474.1 114 PFKKVKRAINEDDYDD----DDDDEEEEEGEAPVAS-GANMQVPKASVSS 158
                 344555577899*999....2234334444444443.5666667665554 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.006
     PBP1_TM  28 rrrrdddyddeyddeedDdd.dddeeeevprkgkkkkpprkkrr 70 
                 +rr+++  dd       D   d d+e  ++ +g+k+ ++  k+r
  CCE30474.1 441 ERRKQNGGDD-------DAGeDSDDEPIMSSRGRKATTKGTKSR 477
                 2222222222.......333356667778999999888877776 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.2
     PBP1_TM  45 Ddddddeeeevprkgkkkkpprkkrrwl 72 
                   ++d+e +   + +kk++    k r l
  CCE30474.1 567 QAHEDEEYKIWKQTTKKDRALAAKERHL 594
                 3344444444444456666666666654 PP

>> Bromo_TP_like  Histone-fold protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     1e-05     0.031       3      44 ..     789     830 ..     787     855 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
  Bromo_TP_like   3 lklvivEillQvGferiseqslniltdllkyyiekillkikk 44 
                    lk +++ il  +Gfe +   ++++ltd+ + y +k+ +  k 
     CCE30474.1 789 LKRSVAKILYHTGFEEMQPSAMDTLTDIAADYFQKLVKTFKT 830
                    8899*******************************9887776 PP

>> DUF3562  Protein of unknown function (DUF3562)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.8e-05     0.054       2      36 ..     193     227 ..     192     229 .. 0.93
   2 ?   -2.7   0.0       1.5   4.6e+03      17      29 ..     852     864 ..     849     868 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
     DUF3562   2 ddvdeiiqaiAeetdaPeelVsrlyedavaalaed 36 
                 d+ d++i++iAe ++a+e++ +r +  ++  l++d
  CCE30474.1 193 DSNDDAIRKIAEARHATEQAARRSFHTIIYTLEND 227
                 5789***********************99999887 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
     DUF3562  17 aPeelVsrlyeda 29 
                 +Pee+V + +++a
  CCE30474.1 852 TPEEVVLHTLDEA 864
                 8*******99886 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   2.5    0.0073        22      59      76 ..     121     138 ..     107     154 .. 0.59
   2 ?    7.1   0.2    0.0021       6.3      26      76 ..     406     461 ..     398     480 .. 0.67
   3 ?   -3.0   0.0       2.9   8.6e+03      24      55 ..     878     910 ..     876     932 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0073
     DUF4611  59 aaagdeeeegededdeee 76 
                 a ++d+ ++++d+++eee
  CCE30474.1 121 AINEDDYDDDDDDEEEEE 138
                 344444444444433333 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0021
     DUF4611  26 drlksllsgvaqlreevsellstlveqe.....aqddvaaagdeeeegededdeee 76 
                 ++l+ +  g+ +  e+   l+ +l  +      a+++++++g +++ ged dde+ 
  CCE30474.1 406 SPLRRMANGMRKEAEKLIPLIPDLAIRSraeveAEERRKQNGGDDDAGEDSDDEPI 461
                 66777777776666666666665544432234388999999999999999999875 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.9
     DUF4611  24 eadrlksllsgv.aqlreevsellstlveqeaq 55 
                 + drl s l+ + ++++ + ++ll +    +a 
  CCE30474.1 878 DVDRLSSRLGVLhERMKLHLTDLLRPALAADAG 910
                 567777777666357999999999987777733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1446  (0.0806515); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.44
# Mc/sec: 8101.62
//
Query:       CCE30475.1  [L=199]
Description: uncharacterized protein CPUR_04323 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-07   31.5   3.3    3.2e-07   31.1   3.3    1.3  1  VanZ       VanZ like family
  ------ inclusion threshold ------
      0.049   13.6   0.8        2.6    8.0   0.7    2.2  2  RseC_MucC  Positive regulator of sigma(E), RseC/MucC
        8.2    6.0   6.6    1.5e+02    2.0   6.6    2.6  1  DUF4131    Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> VanZ  VanZ like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   3.3   5.3e-11   3.2e-07      57     124 ..      34     110 ..       5     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 5.3e-11
        VanZ  57 gnvalfvplGfllplllkkk..flk.......vlllgfllslsiElhQlfvp.gRsfdvdDvilntlGallGillyll 124
                  +v++++ + +l  +++       +        ++++++l ++ E++Q ++p  R fd+ D++ n +G l+G++l++l
  CCE30475.1  34 DKVVHLITFFILTIVFYWIVdtN-RrrtlnmtLVVCTLCLGVGSEFVQSILPnDREFDLYDIVANLVGSLAGLGLCSL 110
                 58899999877766666333431.145777756666779**********************************99987 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.7   0.00044       2.6      75     118 ..      13      60 ..       7      70 .. 0.85
   2 ?    3.8   0.0    0.0086        51      89     125 ..      83     122 ..      63     128 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00044
   RseC_MucC  75 llllilgallgsall....gssellaalgallglvlgflivrllskrl 118
                 lllli+g++  s l     ++++++++++ ++++++ ++iv   ++r+
  CCE30475.1  13 LLLLIAGYAGLSKLQlgglVNDKVVHLITFFILTIVFYWIVDTNRRRT 60 
                 788999999999998999999999999999999999999999888874 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0086
   RseC_MucC  89 l...gssellaalgallglvlgflivrllskrlkkkskfq 125
                 l    + +l+ +++ l+g ++g+ +  l+ kr+ ++++ q
  CCE30475.1  83 LpndREFDLYDIVANLVGSLAGLGLCSLYHKRMLERKRNQ 122
                 3666455677777777777777777777777766655544 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   6.6     0.024   1.5e+02       9      50 ..      38      78 ..       3     148 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.024
     DUF4131  9 llalllllllllllllrr.rprrrvllllllllllallgfalr 50
                 l+++++l+++ +++     +rrr+l + l+++ l+l++    
  CCE30475.1 38 HLITFFILTIVFYWI--VdTNRRRTLNMTLVVCTLCLGVGSEF 78
                333333333333333..24555555555555555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1420.39
//
Query:       CCE30476.1  [L=189]
Description: related to prefoldin subunit 3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-35  119.6   0.4    6.6e-35  119.6   0.4    1.7  2  Prefoldin    Prefoldin subunit
     0.0012   18.7   0.3     0.0012   18.7   0.3    3.2  4  Prefoldin_2  Prefoldin subunit
  ------ inclusion threshold ------
      0.019   14.9   0.2      0.019   14.9   0.2    2.0  2  DUF1151      Protein of unknown function (DUF1151)
      0.038   14.0   1.7        6.6    6.8   0.1    2.4  2  DUF1664      Protein of unknown function (DUF1664)
       0.04   13.5   6.3       0.59    9.7   0.3    2.1  2  Filament     Intermediate filament protein
       0.36   10.7   5.4       0.32   10.9   0.2    2.3  3  LMP          LMP repeated region
       0.42   11.1   5.6          5    7.6   0.1    3.3  5  FlaC_arch    Flagella accessory protein C (FlaC)
       0.67    9.6   7.9          1    9.0   2.8    2.1  2  Lebercilin   Ciliary protein causing Leber congenital amauros
        1.1    9.3   7.0        1.5    8.8   0.3    2.8  3  Sec2p        GDP/GTP exchange factor Sec2p


Domain annotation for each model (and alignments):
>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.4   3.3e-38   6.6e-35       1     120 []      47     169 ..      47     169 .. 0.99
   2 ?   -3.1   0.7       3.5     7e+03      80      95 ..     170     185 ..     170     188 .. 0.67

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 3.3e-38
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT....-TT-EEEEEEETTEEEEEE--STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin   1 lkeeleslqaelaqlkeaieelektletlktlkk...edegkevlvplgaglyvkaevkdtdkvlvdlGagyyveksleeAiellkkkleelekqlekl 96 
                 +++++ ++q++++ l+e+i+e++ktl+t++ lk    e+e++e++++l+++ly++a++++t++v+++lGa++++ + ++eA++ll  kl++++ +l ++
  CCE30476.1  47 YQFMEMNVQKRMGGLQEKIPEIQKTLDTVRFLKSrkdETEPIETTFELNDTLYTRAKIPPTEEVYLWLGANIMLSYQVDEAETLLTSKLSTAQTSLSNC 145
                 89************************************************************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  97 eeeleklkdqittleanlaqlyqk 120
                 ee+l++l++qitt+e++ a++y++
  CCE30476.1 146 EEDLDYLREQITTMEVATARVYNW 169
                 **********************98 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHHHHHH CS
   Prefoldin  80 ellkkkleelekqlek 95 
                 e+++k++e+ ++ +++
  CCE30476.1 170 EIVQKRKEKTSEEVDQ 185
                 5777777777776665 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2     0.038        75      70     103 ..      36      69 ..      23      76 .. 0.54
   2 ?    2.6   0.3     0.066   1.3e+02      66      85 ..      53      72 ..      37      90 .. 0.50
   3 !   18.7   0.3   6.3e-07    0.0012      27      96 ..      90     160 ..      54     167 .. 0.83
   4 ?   -0.3   0.8      0.52     1e+03      67      96 ..     172     187 ..     169     189 .] 0.45

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.038
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT CS
  Prefoldin_2  70 rketlekeiktlekqleklekeleelkeelqkkl 103
                  ++ + ++ i++++  + +++k++  l+e++ + +
   CCE30476.1  36 TLRKFQEMISKYQFMEMNVQKRMGGLQEKIPEIQ 69 
                  5555555555555555555555555555554433 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.066
                 HHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2 66 eLeerketlekeiktlekql 85
                 ++++r+  l+++i +++k l
   CCE30476.1 53 NVQKRMGGLQEKIPEIQKTL 72
                 22222222222222222222 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 6.3e-07
                  HHHHHHHHHHHHHHS-TT--EEEEET.TEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  27 qlkelelvleelelldedtkvyklvG.dvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelk 96 
                     el+++l +  +++++++vy   G +++++  ++e+++ L  ++ t+++ ++++e+ l++l+++++ ++
   CCE30476.1  90 TTFELNDTLYTRAKIPPTEEVYLWLGaNIMLSYQVDEAETLLTSKLSTAQTSLSNCEEDLDYLREQITTME 160
                  5568999999999*************5577788**********************************9887 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.52
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  67 Leerketlekeiktlekqleklekeleelk 96 
                  +++rke+ ++e+              +++k
   CCE30476.1 172 VQKRKEKTSEEV--------------DQQK 187
                  344444444444..............3333 PP

>> DUF1151  Protein of unknown function (DUF1151)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.2   9.4e-06     0.019      28      83 ..      51     103 ..      26     109 .. 0.92
   2 ?   -1.8   1.3       1.4   2.9e+03      51      51 ..     174     174 ..     126     189 .] 0.65

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.4e-06
     DUF1151  28 ELllnqkrglvleeKpELqrvlekrkeeqvlkqkkeeeeakkkkseLeqelekraq 83 
                 E+ +++++g ++e+ pE+q+ l+  +    lk +k+e e  +++ eL+ +l  ra+
  CCE30476.1  51 EMNVQKRMGGLQEKIPEIQKTLDTVR---FLKSRKDETEPIETTFELNDTLYTRAK 103
                 788888889999999***********...6**********************9987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
     DUF1151  51 k 51 
                 k
  CCE30476.1 174 K 174
                 1 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0033       6.6      73     122 ..      21      70 ..      17      75 .. 0.89
   2 ?    6.3   0.1    0.0047       9.3      80     117 ..     126     163 ..     120     173 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0033
     DUF1664  73 kkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 +k+++  ++ ++++  + + +e +s+ +    +v++ + gl++k+ +i++
  CCE30476.1  21 DKVEDYVATRQDVEPTLRKFQEMISKYQFMEMNVQKRMGGLQEKIPEIQK 70 
                 68899999999999999999999999999999999999999999999976 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0047
     DUF1664  80 eiskeikeevtevredlseigedvesvkeavegleskl 117
                 e+ + +++++++++  ls+ +ed++ ++e ++++e   
  CCE30476.1 126 EAETLLTSKLSTAQTSLSNCEEDLDYLREQITTMEVAT 163
                 56667788889999999999999999999999998655 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.3    0.0003      0.59      87     140 ..      19      72 ..      16      99 .. 0.85
   2 ?    6.9   1.1     0.002       4.1     242     279 ..     120     157 ..     107     188 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0003
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  87 lrkkyekelnkreevEaelkalrkdldeatlarvdLekkvesLkeelaflkkvh 140
                 +  k+e+ ++ r++vE +l++++  + + + + ++++k++  L+e +   +k  
  CCE30476.1  19 FVDKVEDYVATRQDVEPTLRKFQEMISKYQFMEMNVQKRMGGLQEKIPEIQKTL 72 
                 5679999**************************************997666654 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.002
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 242 leaqlaeleerleaeleklqeklseleeelaeireema 279
                 l  q+ e+e  l ++l+++q +ls+ ee+l  +re++ 
  CCE30476.1 120 LSYQVDEAETLLTSKLSTAQTSLSNCEEDLDYLREQIT 157
                 44556666666666666666666666666666665543 PP

>> LMP  LMP repeated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00016      0.32       9      75 ..      19      89 ..      16     104 .. 0.82
   2 ?    2.5   0.0     0.063   1.2e+02     120     152 ..     124     156 ..     120     161 .. 0.84
   3 ?   -3.9   0.2       5.7   1.1e+04      17      28 ..     173     184 ..     168     188 .. 0.46

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
         LMP  9 LiDnDkeiqkakkeLekeiqkanqalnsnntasmqsakss..LdakvteitkkLek..FnkdkeakFkeLe 75
                 +D+ ++ + +++++e  ++k ++++ + +  +m+  k    L+ k+ ei+k L++  F k++  + + +e
  CCE30476.1 19 FVDKVEDYVATRQDVEPTLRKFQEMISKYQFMEMNVQKRMggLQEKIPEIQKTLDTvrFLKSRKDETEPIE 89
                579999999************************999887444************97336666666655555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.063
         LMP 120 ieaaneeLkqaLakakaakeqvdnaakslkeqL 152
                 + +a + L  +L++a+++ ++ +++   l+eq+
  CCE30476.1 124 VDEAETLLTSKLSTAQTSLSNCEEDLDYLREQI 156
                 567888999999999999999999999999997 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 5.7
         LMP  17 qkakkeLekeiq 28 
                 qk k++ ++e+ 
  CCE30476.1 173 QKRKEKTSEEVD 184
                 333444444443 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.4   2.8e+03      20      27 ..      38      45 ..      20      58 .. 0.55
   2 ?    4.3   0.1     0.027        54       1      19 [.      57      75 ..      31      77 .. 0.71
   3 ?    4.2   0.0     0.028        56       1      20 [.      57      76 ..      57      93 .. 0.82
   4 ?    7.6   0.1    0.0025         5       7      34 ..     133     160 ..     124     168 .. 0.79
   5 ?   -1.1   0.2       1.3   2.7e+03      18      34 ..     171     187 ..     160     189 .] 0.75

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
   FlaC_arch 20 kkeneels 27
                +k +e +s
  CCE30476.1 38 RKFQEMIS 45
                33333333 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.027
   FlaC_arch  1 ridelEnklsklsteletv 19
                r++ l++k+++++ +l+tv
  CCE30476.1 57 RMGGLQEKIPEIQKTLDTV 75
                4555566666666666655 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.028
   FlaC_arch  1 ridelEnklsklsteletvk 20
                r++ l++k+++++ +l+tv+
  CCE30476.1 57 RMGGLQEKIPEIQKTLDTVR 76
                78899999999999999997 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0025
   FlaC_arch   7 nklsklsteletvkkeneelsksveelk 34 
                 +kls  +t+l++ +++++ l++++++++
  CCE30476.1 133 SKLSTAQTSLSNCEEDLDYLREQITTME 160
                 6788888888888888888888888876 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 1.3
   FlaC_arch  18 tvkkeneelsksveelk 34 
                  v+k  e+ s++v++ k
  CCE30476.1 171 IVQKRKEKTSEEVDQQK 187
                 57788888888888755 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.024        48     132     174 ..      32      74 ..      24      96 .. 0.65
   2 ?    9.0   2.8    0.0005         1     122     173 ..     131     184 ..     120     189 .] 0.79

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.024
  Lebercilin 132 kleekeekikeLerkleleeksfrrqlaaekkktkeaqeevka 174
                  +e + +k++e+  k + +e + ++++   ++k+ e+q+++++
  CCE30476.1  32 DVEPTLRKFQEMISKYQFMEMNVQKRMGGLQEKIPEIQKTLDT 74 
                 5555555555555555555555555555555555555555544 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0005
  Lebercilin 122 LqkkLeeleakleekeekikeLerkleleeksfrrqlaaekkktk..eaqeevk 173
                 L++kL+++++ l + ee+++ L+ ++  +e + +r ++ e  +++  ++ eev+
  CCE30476.1 131 LTSKLSTAQTSLSNCEEDLDYLREQITTMEVATARVYNWEIVQKRkeKTSEEVD 184
                 799********************************9998865554005555555 PP

>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.032        63      36      69 ..      42      75 ..      38      91 .. 0.90
   2 ?    8.8   0.3   0.00077       1.5      46      86 ..     122     162 ..     115     168 .. 0.84
   3 ?   -0.2   0.2      0.49   9.8e+02      38      62 ..     161     186 ..     158     188 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.032
                HHHHHHHHHHHHHHHHHHHHHHHHTTHCHCCCHC CS
       Sec2p 36 kmVaaarkekealekkneklkeqLkeketllesl 69
                +m+++ +  + +++k+   l+e++ e ++ l++ 
  CCE30476.1 42 EMISKYQFMEMNVQKRMGGLQEKIPEIQKTLDTV 75
                68999999999****************9999875 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00077
                 HHHHHHHHHHHHHHTTHCHCCCHCTSSSSHHHHCTTTXXXX CS
       Sec2p  46 ealekkneklkeqLkeketlleslqeqLkeLkevlekmeee 86 
                 +++++ ++ l+++L+ ++t l++ +e+L  L+e + +me  
  CCE30476.1 122 YQVDEAETLLTSKLSTAQTSLSNCEEDLDYLREQITTMEVA 162
                 56777788899999999999999999999999999999865 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.49
                 HHHHH.HHHHHHHHHHHHHHHHHTTH CS
       Sec2p  38 Vaaar.kekealekkneklkeqLkek 62 
                 Va+ar  + e ++k++ek  e+++++
  CCE30476.1 161 VATARvYNWEIVQKRKEKTSEEVDQQ 186
                 66666555677888888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1205  (0.0672095); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1380.93
//
Query:       CCE30477.1  [L=866]
Description: uncharacterized protein CPUR_04325 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   11.7   0.0       0.39   10.7   0.0    1.4  1  SwrA      Swarming motility protein


Domain annotation for each model (and alignments):
>> SwrA  Swarming motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.2e-05      0.39      67     110 ..     513     556 ..     507     561 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.2e-05
        SwrA  67 ylidnhkrlslsltdikksmqliedlldvevdsslkdfslsnvs 110
                  l++nh+ l++s td    m  i d +++    +l+ f+l n +
  CCE30477.1 513 ELVQNHRALGISSTDQLGLMLRIADTMKIRAGLQLSGFTLFNKC 556
                 699************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 6492.00
//
Query:       CCE30478.1  [L=782]
Description: uncharacterized protein CPUR_04326 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 5332.66
//
Query:       CCE30479.1  [L=117]
Description: uncharacterized protein CPUR_04327 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.059   13.4   0.2        2.9    7.9   0.0    2.1  2  LOH1CR12        Tumour suppressor protein
       0.13   12.1   0.0       0.16   11.8   0.0    1.1  1  Peptidase_M4_C  Thermolysin metallopeptidase, alpha-helical d


Domain annotation for each model (and alignments):
>> LOH1CR12  Tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00032       2.9      80     106 ..      11      37 ..       7      48 .. 0.86
   2 ?    3.6   0.0    0.0072        65      88     125 ..      69     106 ..      58     109 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00032
    LOH1CR12  80 asyaealskvnelsdqlsriqiiledi 106
                 ++ya++l  ++++s+++++++ i e++
  CCE30479.1  11 EEYAAQLRDLEKVSADMKKCDAISEEV 37 
                 68******************9987764 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0072
    LOH1CR12  88 kvnelsdqlsriqiiledivpllEtlnelLdedeRLeP 125
                 ++++l  + +++ + +  +v++lE l ++ +e  RL+P
  CCE30479.1  69 GMRQLVCIYAQLLTHMLPTVKSLESLQSMWEEFVRLDP 106
                 55555555555555666789999******999999998 PP

>> Peptidase_M4_C  Thermolysin metallopeptidase, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.8e-05      0.16      47     128 ..      10      85 ..       6     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.8e-05
  Peptidase_M4_C  47 pkskgdalRsmsnPssdgsspdhykkyvateednggvHlnSgilnkafyllaeggtktevkvtgigiekaakiyyraltkyl 128
                     ++++   lR++++ s+d ++ d ++++v    +++ vH+  g+    +  + e+   + ++ + +g+++   iy + lt+ l
      CCE30479.1  10 EEEYAAQLRDLEKVSADMKKCDAISEEV----QKLRVHMEAGVEAFRALGVMEQ--WCFKENNLLGMRQLVCIYAQLLTHML 85 
                     5677899*******************95....89*********87666666666..66666677788888888777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 840.83
//
Query:       CCE30480.1  [L=479]
Description: related to protein tyrosine phosphatase phi [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-48  162.9   0.0    1.4e-47  162.3   0.0    1.3  1  Y_phosphatase    Protein-tyrosine phosphatase
     0.0028   17.8   0.0     0.0056   16.8   0.0    1.5  1  PTPlike_phytase  Inositol hexakisphosphate
      0.007   16.4   0.0      0.012   15.6   0.0    1.4  1  Y_phosphatase3   Tyrosine phosphatase family
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.029   14.2   0.0    1.6  1  DSPc             Dual specificity phosphatase, catalytic doma


Domain annotation for each model (and alignments):
>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3   0.0   3.1e-51   1.4e-47       5     233 ..     168     426 ..     166     428 .. 0.84

  Alignments for each domain:
  == domain 1  score: 162.3 bits;  conditional E-value: 3.1e-51
                    SSSTTS-B-CTTEEEBTTTTTTTTEEEEEEEEECT.E.....EEEEEEEE---GGGHHHHHHHHHHT..T--EEEEESBSEETTEESS---S-SST CS
  Y_phosphatase   5 nRykdilpydksrVklkssegpsdYInAnyikgyk.k.....ekkyIatQgPlkstvedFWrmvwqe..kvkvivmLtsleekgrekcaqYwpeee 92 
                     Ry +i+p +++rV+lk  +++ dY+nA+ i++   +     + +yIa QgP+  ++   Wrmv ++  +  viv+Lts++e g  kc+qY+p++ 
     CCE30480.1 168 DRYFNIKPWNHNRVRLKVADDAFDYVNASTITLNPvRnkslpPLRYIAMQGPTLPSFTYVWRMVAEQtaSPAVIVQLTSMVEGGAVKCHQYFPDNA 263
                    699*************9999999********6665434566799********999************43457*********************777 PP

                    SS...EEEETTEEEEEE..........EEEEEESSEEEEEEEEEETTTTEEEEEEEEEEESSS-SSSSG..SCCHHHHHHHHHHHHHHSTTSS-EE CS
  Y_phosphatase  93 ee...sleygkikvtlk.........ekekedekeyvlrelevkkkkeeseerevkqlqytnWpdhgvp..esaksllklirkvekskeaksgpvv 174
                    ee   +   ++  + +          ++e + + ++  r+l ++ ++e  ++r +++l yt Wpd gvp  ++ +s+lkl+r  + ++ + s+p +
     CCE30480.1 264 EEpawT--LNEEDIWNDgwkawmayhSREDAADGAIEKRKLLLHVDGEA-QPRVIWHLLYTRWPDFGVPtiDDMESFLKLMRLSRDYN-QASSPRI 355
                    765433..44444444444566667667777788999999999988888.599****************999999******9999999.899**** PP

                    EECSSSSHHHHHHHHHHHHHHHHHH......HSE.......EEHHHHHHHHHTTSTTSS-SHHHHHHHHHHH CS
  Y_phosphatase 175 VhCsaGvgRtgtfvaldillqqlea......eee.......vdvlqivkelrkqRpgmvqtleqyiflyevi 233
                    VhCsaGvgRtgtf++l+ l+++le+      + +         ++++v +lr+qR +mvq+  qy fly+v+
     CCE30480.1 356 VHCSAGVGRTGTFISLEHLMRELESgtfahlN-HpdhkhspDLIYDTVDQLRQQRLSMVQSNVQYRFLYDVL 426
                    *************************5554431.1344455555667************************97 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.2e-06    0.0056      98     156 .]     316     376 ..     297     376 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.2e-06
                      TT-EEEEEEE-TTS---HHHHHHHHHHHHTS-T....T-EEEEE-SSSSHHHHHHHHHHHHHH CS
  PTPlike_phytase  98 lslrYaRipitdekapeeedfdalvsilkeape....ktalvfnCqmGrgRTTtamviatLll 156
                      ++l Y+R p  d + p+  d+++++++++   +    +++ +++C++G+gRT t++ +  L++
       CCE30480.1 316 WHLLYTRWP--DFGVPTIDDMESFLKLMRLSRDynqaSSPRIVHCSAGVGRTGTFISLEHLMR 376
                      566677764..88999999999999999877556788999**************998888875 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.7e-06     0.012      86     140 ..     307     371 ..     251     385 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.7e-06
  Y_phosphatase3  86 keeeeaeetlaelYrelle......sakkayrkvfealad.ee...pvlfHCtaGKDRTGvlaal 140
                     + e++ +  ++ lY ++++      +  +++ k+++  +d ++   p ++HC+aG  RTG ++ l
      CCE30480.1 307 DGEAQPRVIWHLLYTRWPDfgvptiDDMESFLKLMRLSRDyNQassPRIVHCSAGVGRTGTFISL 371
                     55666777778889999998887777778899999988887557999*************98876 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   6.5e-06     0.029      71      98 ..     349     377 ..     329     385 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.5e-06
                 HTT-EEEEEESSSSSHHHHHH.HHHHHHH CS
        DSPc  71 qkgkkvlVHCqaGisRSatli.iaYlmkt 98 
                 q     +VHC aG+ R++t+i + +lm++
  CCE30480.1 349 QASSPRIVHCSAGVGRTGTFIsLEHLMRE 377
                 5566668************9845788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3421.83
//
Query:       CCE30481.1  [L=611]
Description: uncharacterized protein CPUR_04329 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-27   95.2   5.3    1.6e-05   25.4   0.0    7.5  7  RCC1      Regulator of chromosome condensation (RCC1) repeat
    3.1e-13   49.1  17.1    6.5e-08   32.2   0.0    6.7  7  RCC1_2    Regulator of chromosome condensation (RCC1) repeat
  ------ inclusion threshold ------
       0.15   12.3   0.3       0.69   10.2   0.1    2.3  2  DUF1459   Protein of unknown function (DUF1459)


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.018   1.1e+02       4      11 ..     129     136 ..     128     168 .. 0.67
   2 ?    3.1   0.0     0.026   1.5e+02      33      49 ..     270     286 ..     258     287 .. 0.82
   3 !   20.1   0.0   1.2e-07   0.00074      12      50 .]     306     351 ..     304     351 .. 0.79
   4 !   25.4   0.0   2.6e-09   1.6e-05       2      49 ..     355     412 ..     355     413 .. 0.87
   5 !   14.6   0.0   6.3e-06     0.038       4      50 .]     441     501 ..     440     501 .. 0.86
   6 !   21.8   0.4   3.6e-08   0.00021       4      34 ..     527     557 ..     526     575 .. 0.88
   7 ?   -0.1   0.0      0.25   1.5e+03      38      49 ..     596     607 ..     565     608 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.018
                 EEEEE--G CS
        RCC1   4 VysWGrnd 11 
                 Vy+WG+n 
  CCE30481.1 129 VYAWGSNA 136
                 9****885 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.026
                 TTS-EEEEEEETTEEEE CS
        RCC1  33 sgnrvvkvacGddhtva 49 
                 +g++v+++++G  h++ 
  CCE30481.1 270 RGEKVTDISSGLEHCLI 286
                 455***********987 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 1.2e-07
                 GGTTSS.SS-.--E.....EEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1  12 yGqLGl.gtt.esv.....lvPtkveglsgnrvvkvacGddhtval 50 
                 +Gq+G+ g t +++     + P ++++l+g +v+++a+Gd+h+v l
  CCE30481.1 306 KGQMGIaGLTwDNRpkgpyDQPHELKFLQGCEVKAIAAGDNHSVIL 351
                 79****655565554453355**********************975 PP

  == domain 4  score: 25.4 bits;  conditional E-value: 2.6e-09
                 TEEEEEE--GGGTTSSSS---E...EEEEE-GGGTTS.......-EEEEEEETTEEEE CS
        RCC1   2 GrVysWGrndyGqLGlgttesv...lvPtkveglsgn.......rvvkvacGddhtva 49 
                 Gr++++G n  GqLG+ t++++   ++P +v+  +         +v+ +a+G+  t++
  CCE30481.1 355 GRIFTFGDNLCGQLGCETDVRStyiTTPLRVSVDKLYtkagvapKVTNIAAGGANTFF 412
                 9******************77756677*9997765448889999************97 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 6.3e-06
                 EEEEE--GGGTTSSSS-.--EEEEEE-GGGTTS.............-EEEEEEETTEEEEE CS
        RCC1   4 VysWGrndyGqLGlgtt.esvlvPtkveglsgn.............rvvkvacGddhtval 50 
                 ++ +G++ +G LG+g+  + + +Ptkv+ ls+              + ++ + G+ h++a+
  CCE30481.1 441 LWVCGQGIMGTLGTGKWtHVSRKPTKVNALSSLfefdestkknmpiKLKALSIGSTHCAAV 501
                 89************999655579****9999888888888999999999999999999986 PP

  == domain 6  score: 21.8 bits;  conditional E-value: 3.6e-08
                 EEEEE--GGGTTSSSS---EEEEEE-GGGTT CS
        RCC1   4 VysWGrndyGqLGlgttesvlvPtkveglsg 34 
                 V+ WG n+++qLG+g++ + ++Pt + +l+g
  CCE30481.1 527 VLFWGGNEHYQLGTGKRSNLNTPTYIGPLDG 557
                 888**********************988776 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 0.25
                 EEEEEETTEEEE CS
        RCC1  38 vkvacGddhtva 49 
                 +kv cG + t++
  CCE30481.1 596 QKVECGKYVTAV 607
                 57****999986 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.1    0.0073        44      20      26 ..     129     135 ..     117     137 .. 0.82
   2 ?    0.5   0.0     0.097   5.8e+02      10      25 ..     172     187 ..     170     190 .. 0.85
   3 ?   -0.7   0.0      0.22   1.3e+03      13      22 ..     217     226 ..     213     227 .. 0.86
   4 !   16.4   0.1   9.5e-07    0.0057       1      22 [.     274     295 ..     274     296 .. 0.95
   5 !   32.2   0.0   1.1e-11   6.5e-08       1      30 []     338     367 ..     338     367 .. 0.99
   6 ?   -3.1   0.0       1.3   7.7e+03       1      13 [.     400     412 ..     400     415 .. 0.71
   7 ?    0.2   2.4      0.12   7.3e+02       2      17 ..     489     504 ..     488     537 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0073
      RCC1_2  20 VlcWGsN 26 
                 V++WGsN
  CCE30481.1 129 VYAWGSN 135
                 9*****9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.097
      RCC1_2  10 HscaLtedGeVlcWGs 25 
                 +  a++e+G+++ WG 
  CCE30481.1 172 FGAAIDETGDLVQWGL 187
                 6789*******99995 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.22
      RCC1_2  13 aLtedGeVlc 22 
                 +L ++GeV++
  CCE30481.1 217 SLARNGEVYS 226
                 7899*****8 PP

  == domain 4  score: 16.4 bits;  conditional E-value: 9.5e-07
      RCC1_2   1 VksvsaGdyHscaLtedGeVlc 22 
                 V+++s+G  H ++Lt+ G+V++
  CCE30481.1 274 VTDISSGLEHCLILTSKGRVFT 295
                 899*****************96 PP

  == domain 5  score: 32.2 bits;  conditional E-value: 1.1e-11
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 Vk+++aGd+Hs++L+  G+++++G+N +GQ
  CCE30481.1 338 VKAIAAGDNHSVILDKLGRIFTFGDNLCGQ 367
                 89***************************9 PP

  == domain 6  score: -3.1 bits;  conditional E-value: 1.3
      RCC1_2   1 VksvsaGdyHsca 13 
                 V+ ++aG+  +++
  CCE30481.1 400 VTNIAAGGANTFF 412
                 5679999876665 PP

  == domain 7  score: 0.2 bits;  conditional E-value: 0.12
      RCC1_2   2 ksvsaGdyHscaLted 17 
                 k++s+G+ H  a++++
  CCE30481.1 489 KALSIGSTHCAAVMDN 504
                 6789999999999987 PP

>> DUF1459  Protein of unknown function (DUF1459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00011      0.69      52      72 ..     126     146 ..     118     152 .. 0.82
   2 ?   -3.9   0.0       2.8   1.7e+04      15      35 ..     285     305 ..     283     306 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00011
     DUF1459  52 YPsvyaWGsnknkesaasaia 72 
                 +P vyaWGsn ++  ++s+  
  CCE30481.1 126 HPGVYAWGSNAGRVVDPSSSD 146
                 799*********999888755 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.8
     DUF1459  15 liisssqqvvvPevsaayyps 35 
                 li++s+  v++ + s+  +ps
  CCE30481.1 285 LILTSKGRVFTAASSSQSFPS 305
                 567777888888877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 4262.99
//
Query:       CCE30482.1  [L=763]
Description: related to conserved oligomeric Golgi complex component 3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-44  149.3   0.3    1.7e-43  148.1   0.3    1.7  1  Sec34     Sec34-like family
    0.00043   20.0   2.5     0.0011   18.7   2.5    1.7  1  GCIP      Grap2 and cyclin-D-interacting


Domain annotation for each model (and alignments):
>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   0.3   1.9e-47   1.7e-43       1     146 [.     144     290 ..     144     293 .. 0.98

  Alignments for each domain:
  == domain 1  score: 148.1 bits;  conditional E-value: 1.9e-47
       Sec34   1 yldqLeskeeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLkyFeeldpitrkLnspgss.lvksesFlemL 98 
                 y dqL+ + +++d l+ +++++l +L++l+++f+sv+ +ts+++++ce+ll+e+krle+l++++ ++L ++ +ld++tr+Ln+pg+s lv++++F e++
  CCE30482.1 144 YEDQLSLTDRHLDGLIVDANATLALLTNLSDSFQSVHMQTSTFQAQCEDLLDERKRLEKLVDDVGTDLYFYVYLDTATRRLNAPGASrLVDDDEFGEIV 242
                 679************************************************************************************************ PP

       Sec34  99 kklDeclefleehpefkeaetYlirfkqcltrAltliknyvvnslkel 146
                 ++l++c+ef+ +h +++e ++Yl+r++ +lt+Al+l+ + +++ l++ 
  CCE30482.1 243 ENLNSCVEFMTKHDTYRERDAYLARYNALLTKALHLLDHGFSTRLEKW 290
                 *******************************************99986 PP

>> GCIP  Grap2 and cyclin-D-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   2.5   1.2e-07    0.0011     150     237 ..     123     212 ..      86     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.2e-07
                 ------------------TTS--HHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHH--TT...-HHHHHHHHHHHHHHHHHHHHHHHHHS CS
        GCIP 150 dededdldddedeergnqdrklseeekevikavlkll....katvallkklsrsiteegkkdskeqvaqldklldlskeiseqvDdLaaslY 237
                  + e d+dd+   ++++q+ +l e+++ +++  l+ l    +at+all+ ls s + +   +++++ aq ++lld  k + + vDd++++lY
  CCE30482.1 123 APGEIDIDDEML-KDAQQEYMLYEDQLSLTDRHLDGLivdaNATLALLTNLSDSFQ-SVHMQTSTFQAQCEDLLDERKRLEKLVDDVGTDLY 212
                 233334444433.6899999999*******998877779*****************.788899999************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 5424.12
//
Query:       CCE30483.1  [L=311]
Description: related to carrier protein YMC1, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-58  195.1   3.1    3.4e-19   68.6   0.3    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.1   2.3e-21     4e-17       4      95 ..      15     100 ..      12     102 .. 0.94
   2 !   64.0   0.0   4.8e-22   8.7e-18       3      90 ..     120     207 ..     118     210 .. 0.93
   3 !   68.6   0.3   1.9e-23   3.4e-19       2      93 ..     220     310 ..     219     311 .] 0.95

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 2.3e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +++++l++G+++g++++++ +P+d+vK+rlqt  + s       +l++  +iyk+eG +++y+G l  ll++    +++f+++   +r++ +
  CCE30483.1  15 QTARDLFSGAMGGIAQVVIGQPFDIVKVRLQTTTQYSG------ALQAATSIYKTEGPLAFYKGTLTPLLGIGACVSIQFGAFHAARRWFED 100
                 67899***************************999876......699*****************************************9976 PP

  == domain 2  score: 64.0 bits;  conditional E-value: 4.8e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHH.HGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGl.rglyrGllpnllrvapasalkfvlyetlk 90 
                 ls++++++aG++ag+++t + tP++ +++rlq+q++  +   +++ ld+++k+  +eGl rglyrG +++l r a+a +++f+++e+l 
  CCE30483.1 120 LSYTQYFAAGAFAGVANTALSTPIEHIRIRLQSQPHGDAR-LYNGPLDCVRKLSTHEGLlRGLYRGSVVTLYREASAYGAWFTTFEYLM 207
                 7899********************************9876.5567*************999*************************986 PP

  == domain 3  score: 68.6 bits;  conditional E-value: 1.9e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 e++++k  + Gglag v +l+ +P+dv+K ++qt++  +++++s+ +++++  +++  G+ g+++G+lp+l+r +p sa +f++ e++ r +
  CCE30483.1 220 EVPAWKIAFYGGLAGEVLWLASYPFDVIKSKMQTDGFGAQQRYSS-MRSCVAATWRAGGMGGFWKGILPTLFRAMPVSAGTFAVVEMTMRAI 310
                 67899999******************************9998877.*****************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2346.88
//
Query:       CCE30484.1  [L=802]
Description: related to Rad50-interacting protein 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.1e-178  594.3   0.0   4.5e-178  593.2   0.0    1.6  2  RINT1_TIP1     RINT-1 / TIP-1 family
    0.00083   19.4   2.4     0.0026   17.8   2.4    1.8  1  TPR_MLP1_2     TPR/MLP1/MLP2-like protein
     0.0011   18.7   2.6     0.0032   17.3   2.6    1.7  1  Phage_GP20     Phage minor structural protein GP20
  ------ inclusion threshold ------
      0.077   13.5   1.7        0.3   11.6   1.7    2.0  1  CRISPR_Cse2    CRISPR-associated protein Cse2 (CRISPR_cse2)
      0.086   12.3   2.0       0.19   11.1   2.0    1.6  1  FliD_C         Flagellar hook-associated protein 2 C-terminus
      0.089   13.0   4.0       0.28   11.4   4.0    1.8  1  Tropomyosin_1  Tropomyosin like
       0.11   13.1   1.5       0.31   11.6   1.5    1.8  1  Com_YlbF       Control of competence regulator ComK, YlbF/Ymc
       0.15   12.2   3.2         11    6.2   0.3    3.5  3  DUF2730        Protein of unknown function (DUF2730)
       0.17   11.2   3.9       0.38   10.1   3.9    1.5  1  DUF4407        Domain of unknown function (DUF4407)
       0.32   10.4   3.5       0.57    9.6   3.5    1.4  1  Orthopox_A5L   Orthopoxvirus A5L protein-like
       0.36   10.9   8.0        1.3    9.2   6.5    2.4  2  TolA_bind_tri  TolA binding protein trimerisation
       0.94    9.5   3.4       0.68   10.0   1.2    1.9  1  DUF1664        Protein of unknown function (DUF1664)
       0.96    9.5   4.5        2.1    8.4   3.4    2.1  2  UPF0242        Uncharacterised protein family (UPF0242) N-ter
          2    8.4   7.9        6.8    6.7   6.8    2.5  2  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
          7    7.2   8.6        2.3    8.7   2.6    3.4  3  HSCB_C         HSCB C-terminal oligomerisation domain
        7.1    7.0   5.5        3.2    8.1   2.1    2.2  1  DUF948         Bacterial protein of unknown function (DUF948)


Domain annotation for each model (and alignments):
>> RINT1_TIP1  RINT-1 / TIP-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.5   3.9e+03     322     356 ..     176     210 ..     154     216 .. 0.70
   2 !  593.2   0.0    4e-181  4.5e-178       1     499 []     242     793 ..     242     793 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.5
  RINT1_TIP1 322 rkraeelivealkkeikealkaYvnksqWsslsss 356
                 ++++ e++ + +k++ +++l+a ++k +W +++ +
  CCE30484.1 176 VEKVTESLRHEMKEKWSAELDAILTKRHWPKIDPQ 210
                 45566667777777777777777777777666655 PP

  == domain 2  score: 593.2 bits;  conditional E-value: 4e-181
  RINT1_TIP1   1 LplevlvkplekrFrYHFsgdkqTnklsk.pewflefilklleknldflrenvqpilakkfrek........idavsefitaLlplvreKvasvleevl 90 
                 Lp++v++ ++  +Fr+HF++dk+T++++   +++++++l+++ek++df+r+n++++la+kf++         +d+v++++t++lp++reKv++v+ee++
  CCE30484.1 242 LPFDVMTAIFIAEFRFHFMSDKPTSSPQVmETHCFPWFLTTIEKWEDFFRDNLGHMLAAKFNHAgmveqtvyLDPVCALVTSMLPVMREKVHAVAEEAV 340
                 8****************************899******************************************************************* PP

  RINT1_TIP1  91 sdpalLshlisellsfdkeLrekykYda...eekwkgLtselLdqekvfekWlevEkefalerfeeIisskdaweidyDsveskktkptksavrvvdLL 186
                 ++pa+Ls+++s+l++fd+++r+++ Yd    +++w+gLt e+Ld++  f++W++vE+++al+rf +I++s+d ++idyD++ ++k+kpt++avrv+dLL
  CCE30484.1 341 NRPAFLSSFVSQLMAFDEHIRSRFGYDGgegDQGWTGLTGEVLDDH--FDTWFKVERAMALDRFGQILDSHDGRRIDYDYAIHGKMKPTYAAVRVTDLL 437
                 ***************************44579**************..*************************************************** PP

  RINT1_TIP1 187 esiteryeplssfsyklkflsdIqlelldqYherLkssleayesltstvgrtlqgetkeqqaelegvkglerlckiygsakylenaledwsdevfFieL 285
                 +++t +y +l+++++k+kfl+dIql++ld Yh+rL+ sleay+s+tst+grtl+g+tkeq a+leg+++le+lck++gs+++++n+l++wsde+fFi L
  CCE30484.1 438 RTVTGKYARLRKLKHKIKFLTDIQLDILDGYHDRLRGSLEAYQSITSTLGRTLHGATKEQIAALEGTGSLETLCKVIGSSDHMANVLTEWSDETFFIVL 536
                 *************************************************************************************************** PP

  RINT1_TIP1 286 weelqerakknee...............stavgse........eegalFdetiaaydrlrkraeelivealkkeikealkaYvnksqWsslsssses.. 359
                 weelq r++++++               +              +eg +F+et++ay+++r+ ae+l+v+al +++ +a+++Y+++ qW+++ +++    
  CCE30484.1 537 WEELQARDAQRSKrdsaassiephgvtgR-----VpsilsegsNEGGIFEETVSAYSSRRQAAEQLLVSALAENHAKACRNYTHHVQWTTVGEAAILdd 630
                 *******9999997777776666665552.....044455578*************************************************9986689 PP

  RINT1_TIP1 360 ..slsvsselvellnllkrlldfLekalskalfrriwrelleklqdllweevllrnkFseaGaaQlarDvealfalvdryik..elklkkLkealkLln 454
                   ++sv+sel+e+l++l+r+++fL ka+s+a frriw+++l klqd+lw+ vl++++F++ GaaQ+a+D+ a+falv+r+i+  +++l +L+e+l+Lln
  CCE30484.1 631 pfQTSVTSELDEPLRVLQRDFEFLAKAISTAAFRRIWHHALVKLQDVLWNAVLMKQSFTTLGAAQFAHDCGAIFALVERFIPggSAALDSLREGLRLLN 729
                 9************************************************************************************************** PP

  RINT1_TIP1 455 lkve.................salsLkealervftd..eakklleelglekLseseardvLerr 499
                 l++e                  +l+Lkea++r+ftd  ea+k+leelgle+L++ +ar++L+rr
  CCE30484.1 730 LPTEpttaagasanvdgsaaePTLTLKEASDRAFTDndEARKVLEELGLEALTPVNARYILQRR 793
                 *********************99***********88889************************9 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   2.4   2.3e-06    0.0026      54     110 ..      25      81 ..      15      88 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.3e-06
  TPR_MLP1_2  54 edvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselek 110
                 +++ +l++l   l+++++++++l++++++a +el+e++ s + + e+l+k+++++++
  CCE30484.1  25 QTAADLNSLDHLLANVETQRNQLQTQLDDAIKELDEARRSTDDRNESLRKQIDDFNQ 81 
                 66778888889999**************************************99876 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   2.6   2.8e-06    0.0032      20      85 ..      37     103 ..      25     149 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.8e-06
  Phage_GP20  20 ldeveeerdtlkeqlkdrdkqLedLkkkakd.neeLqkqieelqaknkkakaeyeakiadlkldnai 85 
                 l++ve++r++l++ql+d+ k+L++   ++ d ne+L kqi++ ++  +  ++  +   +  + d+ai
  CCE30484.1  37 LANVETQRNQLQTQLDDAIKELDEARRSTDDrNESLRKQIDDFNQLQASIDTRVQVSATSDAPDEAI 103
                 679***********************999876899*******9998888777777666666666665 PP

>> CRISPR_Cse2  CRISPR-associated protein Cse2 (CRISPR_cse2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.7   0.00027       0.3      72     126 ..      61     133 ..      24     141 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00027
                  HTCTH..................HHHHHHHHHHCT-SSCCCHHHHHHHHHHHHHCTT--B-HHHHHHHHHTTT CS
  CRISPR_Cse2  72 asess..................esierRfqalltadtpeelarrLrrlvkllrskevpldyarLaddLlawq 126
                  a+ s+                   si+ R+q  +t+d p+e + rL+  +k l+s + + dy  L++d+ +++
   CCE30484.1  61 ARRSTddrneslrkqiddfnqlqASIDTRVQVSATSDAPDEAIARLQLPMKKLQSVDLAHDYLVLLRDVDKFR 133
                  3333223444444555555556699*******************************************98876 PP

>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.0   0.00017      0.19     142     218 ..      20      91 ..      10     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
                 HHHHHH..HHHHHHHHHHTTTSS.......SXSHHHHHHHHHHHHHSTT.SHHHHHHHHXXXXHHHHHHHHHHHHHCHH CS
      FliD_C 142 Lkkalk..enpssveelFsgstsqektvtsdsglatrlenllksyvkssngtlqtasknltkqikdldkkiedldkrle 218
                 L+++l+  ++++s+  l+++        t+ + l t+l++++k++ +++  +++ ++++l kqi+d+++ ++++d r++
  CCE30484.1  20 LDDQLQtaADLNSLDHLLAN------VETQRNQLQTQLDDAIKELDEAR-RSTDDRNESLRKQIDDFNQLQASIDTRVQ 91 
                 55555533567777777777......356789999*********99999.9999*****************99998865 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.0   0.00025      0.28      28      84 ..      21      78 ..      10      92 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
  Tropomyosin_1 28 qenlekeqeiksLtkknqqleeevekleeklkeakekaee.sekkktnnealtrkiql 84
                   +++l+   +++sL + + ++e + ++l+++l +a ++++e   +++  ne+l ++i+ 
     CCE30484.1 21 DDQLQTAADLNSLDHLLANVETQRNQLQTQLDDAIKELDEaRRSTDDRNESLRKQIDD 78
                   677888899***********************98666655156778899*****9986 PP

>> Com_YlbF  Control of competence regulator ComK, YlbF/YmcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.5   0.00028      0.31      16      90 ..      53     130 ..      40     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00028
                 HHHHHHHHHHHHH.HCSHHHHHHHHHHHHHHHHHHH.HHHTT..----HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH CS
    Com_YlbF  16 eeykeykeaeeal.eedeelqklikefkklqkelqe.kqmkg..eelkeeekkelqelkeeldknplvkeyleaeqeln 90 
                 + +ke+ ea++   + +e l+k+i++f++lq ++ + +q +   ++++e+ + +lq   ++l++ +l+ +yl   ++++
  CCE30484.1  53 DAIKELDEARRSTdDRNESLRKQIDDFNQLQASIDTrVQVSAtsDAPDEAIA-RLQLPMKKLQSVDLAHDYLVLLRDVD 130
                 55677777777664789*****************663444446466666666.99999999999999999987666655 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.3    0.0094        11      57      88 ..      22      53 ..      11      60 .. 0.88
   2 ?    2.1   0.1      0.19   2.1e+02      41      70 ..     146     175 ..     124     202 .. 0.71
   3 ?    1.9   0.0      0.21   2.4e+02      23      83 ..     422     480 ..     417     490 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0094
     DUF2730 57 enLPtakdlekLkllladlrgelkaleaevrq 88
                ++L ta dl++L+ lla+++ + ++l+ +++ 
  CCE30484.1 22 DQLQTAADLNSLDHLLANVETQRNQLQTQLDD 53
                5799***********************99985 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.19
     DUF2730  41 kveendkrlteletkvenLPtakdlekLkl 70 
                 ++ e  ++l+el  ++ +LP ++ l+ ++ 
  CCE30484.1 146 SALEPYTKLKELSLRLRSLPGNESLHLIDH 175
                 55566789****************997653 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.21
     DUF2730  23 llldskYakredleklaekveendkrlteletkvenLPtakdlekLkllladlrgelkale 83 
                  +++ +Ya    ++ l  +v+ +  rl +l+ k++ L t  +l+ L+     lrg l+a +
  CCE30484.1 422 GKMKPTYAAVR-VTDLLRTVTGKYARLRKLKHKIKFL-TDIQLDILDGYHDRLRGSLEAYQ 480
                 57777887765.455569999999**********988.77888888888888888887766 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.9   0.00034      0.38     186     254 ..      45     114 ..      18     126 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00034
     DUF4407 186 kekkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasq..aaaaaddGllarlea.ldrlt 254
                  + ++qld+a +el+e++++   ++r ++lr+++++ ++ +a++ ++ q  a+++a d  +arl+  +++l 
  CCE30484.1  45 NQLQTQLDDAIKELDEARRS--TDDRNESLRKQIDDFNQLQASIDTRVQvsATSDAPDEAIARLQLpMKKLQ 114
                 46789999999999999999..99999999999999998877665554411678888999999998888885 PP

>> Orthopox_A5L  Orthopoxvirus A5L protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.5   0.00051      0.57     212     270 ..      25      83 ..      20      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00051
  Orthopox_A5L 212 qkeldnmalkdlmssvekdmrqlqaetedlvtdvydareytrraidqlldlvkgferfq 270
                   q   d  +l  l++ ve++  qlq++ +d + ++ +ar +t    + l +++  f+++q
    CCE30484.1  25 QTAADLNSLDHLLANVETQRNQLQTQLDDAIKELDEARRSTDDRNESLRKQIDDFNQLQ 83 
                   5555666899*******************************999999988888888777 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.5    0.0012       1.3       3      73 ..      27      97 ..      25     100 .. 0.93
   2 ?   -0.1   0.0      0.88   9.9e+02      26      45 ..     461     480 ..     446     486 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0012
  TolA_bind_tri  3 edrvarLErilearsqlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrkleagg 73
                    + + +L+++l++ +    +lq+ql++  +el+e R ++++ +  l++ +   ++l   +D+r++ + ++ 
     CCE30484.1 27 AADLNSLDHLLANVETQRNQLQTQLDDAIKELDEARRSTDDRNESLRKQIDDFNQLQASIDTRVQVSATSD 97
                   5678999******99*************************************************9988876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.88
  TolA_bind_tri  26 qlealqqelreLRGqiEelq 45 
                    ql+ l    ++LRG++E  q
     CCE30484.1 461 QLDILDGYHDRLRGSLEAYQ 480
                    67777777899*****9765 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.2    0.0006      0.68      38      90 ..      39      91 ..      30     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0006
     DUF1664 38 slsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevt 90
                + +   +++ +ql++  ++l +++r   +r +++ k++d+ ++++++i+  v+
  CCE30484.1 39 NVETQRNQLQTQLDDAIKELDEARRSTDDRNESLRKQIDDFNQLQASIDTRVQ 91
                55666788888999999999999999999999999999999998888888775 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.4    0.0019       2.1      92     159 ..      17      87 ..       8     112 .. 0.75
   2 ?   -2.8   0.0       5.1   5.7e+03      11      29 ..     312     330 ..     308     332 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0019
     UPF0242  92 eelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelklele...eqLaekqellqeyqetie 159
                 e+  +++ + +  l++ +++l++ + + +qLq +l ++ ++ +e ++  +   e L+++   ++++q++i 
  CCE30484.1  17 EDYLDDQLQTAADLNSLDHLLANVETQRNQLQTQLDDAIKELDEARRSTDdrnESLRKQIDDFNQLQASID 87 
                 555555666666789999999999999999*****999998888888766111567777777777777664 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.1
     UPF0242  11 lYllPllllaiysiqllse 29 
                 +Yl P++ l+++ ++++ e
  CCE30484.1 312 VYLDPVCALVTSMLPVMRE 330
                 8********9999999874 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.8    0.0061       6.8      31      85 ..      35      88 ..       3     116 .. 0.63
   2 ?   -2.0   0.0         3   3.4e+03      65      97 ..     450     486 ..     430     496 .. 0.48

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0061
  Baculo_PEP_C 31 qilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrn 85
                   +la+++t+ ++++tqL++  ++l ++  + d+r ++l ++++d  n+lq ++++
    CCE30484.1 35 HLLANVETQRNQLQTQLDDAIKELDEARRSTDDRNESLRKQIDD-FNQLQASIDT 88
                  33455555555555555555555555555555555555555543.4666665555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3
  Baculo_PEP_C  65 ldtlltnLtdalnalq....dtlrneLtnlnsiltnL 97 
                   l++ ++ Ltd    +     d lr  L++ +si ++L
    CCE30484.1 450 LKHKIKFLTDIQLDILdgyhDRLRGSLEAYQSITSTL 486
                   2222222222211111244466777777776666665 PP

>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.6    0.0021       2.3      15      62 ..      23      65 ..      15      69 .. 0.85
   2 ?   -1.6   0.1       3.6   4.1e+03      27      45 ..     179     197 ..     167     208 .. 0.46
   3 ?   -1.9   0.0       4.4   4.9e+03      29      58 ..     581     609 ..     574     615 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0021
                HHHCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH CS
      HSCB_C 15 eleeaeeaadkeeleelkaeveerieeleaeleeafekkdleaaadll 62
                +l+ a   ad + l+ l a ve+++++l ++l++a+ k +l++a++ +
  CCE30484.1 23 QLQTA---ADLNSLDHLLANVETQRNQLQTQLDDAI-K-ELDEARRST 65
                45555...699*************************.4.899999876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHHHHHHH CS
      HSCB_C  27 eleelkaeveerieeleae 45 
                   e l++e++e+  +++++
  CCE30484.1 179 VTESLRHEMKEKWSAELDA 197
                 3334444444444333333 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.4
                 HHHHHHHHHHHHHHHHHHHHHHHTT-HHHH CS
      HSCB_C  29 eelkaeveerieeleaeleeafekkdleaa 58 
                 ee  ++ ++r+++ e+ l +a+ +++ ++a
  CCE30484.1 581 EETVSAYSSRRQAAEQLLVSAL-AENHAKA 609
                 5566677889999999999999.5455554 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.1    0.0029       3.2      21      77 ..      30      86 ..      26      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0029
      DUF948 21 llklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteav 77
                l++l ++l +++++ ++l+ q+d  +ke++++ + + +  e +++++++ ++l +++
  CCE30484.1 30 LNSLDHLLANVETQRNQLQTQLDDAIKELDEARRSTDDRNESLRKQIDDFNQLQASI 86
                678999********************************9999999999999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1253  (0.0698868); expected 358.6 (0.02)
Passed bias filter:                      874  (0.0487478); expected 358.6 (0.02)
Passed Vit filter:                       139  (0.0077528); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.46
# Mc/sec: 5191.63
//
Query:       CCE30485.1  [L=279]
Description: uncharacterized protein CPUR_04333 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-56  188.7   2.6    9.8e-56  188.7   2.6    2.0  2  Fig1      Ca2+ regulator and membrane fusion protein Fig1
    2.3e-10   40.5   5.3    3.1e-10   40.1   5.3    1.2  1  SUR7      SUR7/PalI family
     0.0026   16.9   9.0     0.0077   15.3   8.6    1.8  2  DUF898    Bacterial protein of unknown function (DUF898)
  ------ inclusion threshold ------
       0.64    8.7  13.3       0.12   11.1   0.1    2.1  2  DUF2207   Predicted membrane protein (DUF2207)
          1    9.8   3.5        2.4    8.6   0.0    2.7  2  COX7a     Cytochrome c oxidase subunit VII


Domain annotation for each model (and alignments):
>> Fig1  Ca2+ regulator and membrane fusion protein Fig1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.0      0.04   1.4e+02      80     109 ..      32      60 ..      22      63 .. 0.71
   2 !  188.7   2.6   2.7e-59   9.8e-56       5     188 .]      89     269 ..      86     269 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.04
        Fig1  80 yllmvaiiLtlllfllllyfplgseipllP 109
                 ++lm+ ii+ ++l+ lll   + s  pl+P
  CCE30485.1  32 HVLMILIIVSIILLSLLLA-GCSSSSPLIP 60 
                 7888888888888877754.3355666665 PP

  == domain 2  score: 188.7 bits;  conditional E-value: 2.7e-59
        Fig1   5 sanstggleelevrvGYlGvCvdkspksliCrkksnatelasllslsssssskstsdplnlvelakkfsdnvvhpyllmvaiiLtlllfllllyfpl.. 101
                  an+ gg ++l+ rvGY+G+Cv+ + +s+ C  ++nat+la+ +s         ++dplnl++la +f+d +v+pyl+++a+i++++++lll++fp+  
  CCE30485.1  89 IANIAGG-ASLQARVGYFGICVNPDGGSWLC--SNNATALAKEVS--------VDQDPLNLIWLAGQFKDMIVFPYLIIIAVIFAFICVLLLATFPGwh 176
                 5677455.55*********************..************........899******************************************* PP

        Fig1 102 ......gseipllPfkskavskvalvlsflllllwlvgalwqhvassaastlveeasmgivkskvGkkaealgWfafaflllvclglwvlilr 188
                       gse++++Pf+ +a+s+v l+++f++++++lv++lwqh+as+aas ++++  +g+v+s vG++a+a+gWf+fa+l++v++gl+v+il+
  CCE30485.1 177 deedseGSEREVKPFPPRALSQVSLAIIFIASIFILVSVLWQHTASVAASIIAQDFGNGSVRSGVGTSAMAMGWFSFALLIIVTIGLLVMILS 269
                 ******************************************************************************************986 PP

>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   5.3   8.6e-14   3.1e-10       4     211 ..      33     261 ..      30     262 .. 0.78

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 8.6e-14
        SUR7   4 illflslaalilllfailgsiknstpltsiylskfdlsgldlaqi....................gladvysfgvwgyCdnsdvnytkCskpkagypfd 82 
                 +l++l+++++ill + ++g+ ++s  + +i l+++  +  +                        g     ++g++g+C n d ++  Cs+   +   +
  CCE30485.1  33 VLMILIIVSIILLSLLLAGCSSSSPLIPDIFLLSLYYQKYQ---PapdtaqvdyngyaaianiagGASLQARVGYFGICVNPDGGSWLCSNNATALAKE 128
                 7899*********9999999966666668888887777333...23447888************9999999********999999999***99999888 PP

        SUR7  83 pleelnsesngkvdlPsnlrktlsklnnltkalfilhiialvlsfislvv..gllaic....vspdnsr............llsflnlllsvlsflatl 163
                    +++++  + + l +++++ +            l+iia+++ fi++++   + ++     +                  +ls + l + +++ +++l
  CCE30485.1 129 --VSVDQDPLNLIWLAGQFKDMIVF--------PYLIIIAVIFAFICVLLlaTFPGWHdeedS-----EgserevkpfpprALSQVSLAIIFIASIFIL 212
                 ..667777766777********996........889999999998876653245555444430.....2344344444443599999999999999999 PP

        SUR7 164 laalldtllfvfvrkkin.lkefgikaslglkflafaWlalaaallvvi 211
                 +++l++  + v +    + +++  + + +g++ +a+ W ++a++++v+i
  CCE30485.1 213 VSVLWQHTASVAASIIAQdFGNGSVRSGVGTSAMAMGWFSFALLIIVTI 261
                 999998888885554454889999**********************987 PP

>> DUF898  Bacterial protein of unknown function (DUF898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.4     0.071   2.6e+02     183     205 ..      27      49 ..       5      99 .. 0.61
   2 !   15.3   8.6   2.1e-06    0.0077     177     307 ..     142     274 ..      29     278 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.071
      DUF898 183 iwlaavllfllglvlliallaal 205
                 ++ +  +l++l++v +i+l ++l
  CCE30485.1  27 FLGYHHVLMILIIVSIILLSLLL 49 
                 33333333333333333333332 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.1e-06
      DUF898 177 vgdfykiwlaavllfllglvlliallaalltevl.akeaaatadaskseaellk.........lavllilalvllllallaaayykarifnlvwnnttl 265
                 +g+f  +++  +l+++++++++i++l++++     ++e+ ++++++      +k         +++ +i+++ +  ++l+ + + +++ + + + +  +
  CCE30485.1 142 AGQFKDMIVFPYLIIIAVIFAFICVLLLATFPGWhDEEDSEGSERE------VKpfppralsqVSLAIIFIASI--FILVSVLWQHTASVAASIIAQDF 232
                 5555555555555555555555555554443222022222222222......2234566665433333333333..33444444445555555555566 PP

      DUF898 266 egarfksslrardlvllyitnlllllltLGlarpwarvrlar 307
                 ++ + +s + + ++++ +++ +ll+++t+Gl++ ++++r  +
  CCE30485.1 233 GNGSVRSGVGTSAMAMGWFSFALLIIVTIGLLVMILSMRVLE 274
                 777779******************************999765 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   3.3e-05      0.12     382     437 ..      26     175 ..      18     189 .. 0.80
   2 ?   -0.2   9.3     0.091   3.2e+02     384     434 ..     194     273 ..     183     278 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.3e-05
     DUF2207 382 klsalglgliilglilillallllvll........................................................................ 408
                  +  +  +l+il+++ i+l+ lll+++                                                                        
  CCE30485.1  26 PFLGYHHVLMILIIVSIILLSLLLAGCssssplipdifllslyyqkyqpapdtaqvdyngyaaianiaggaslqarvgyfgicvnpdggswlcsnnata 124
                 556666777777777777777777777899999****************************************************************** PP

     DUF2207 409 ........................lvfllilllillliaiivlllfsrllgrr 437
                                         +vf +  l+i+++i++++++l+ ++++ +
  CCE30485.1 125 lakevsvdqdplnliwlagqfkdmIVFPY--LIIIAVIFAFICVLLLATFPGW 175
                 **********************6644444..4444444444444444466666 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.091
     DUF2207 384 salglgliilglilillallllvll.............................lvfllilllillliaiivlllfsrll 434
                 +al+ + + +++i+++++l+++                                + ++++ lli++ i+++v++l+ r+l
  CCE30485.1 194 RALSQVSLAIIFIASIFILVSVLWQhtasvaasiiaqdfgngsvrsgvgtsamaMGWFSFALLIIVTIGLLVMILSMRVL 273
                 5666666777777777776665554888999********************88877777777777777777777776554 PP

>> COX7a  Cytochrome c oxidase subunit VII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00068       2.4      17      43 ..     138     164 ..     133     169 .. 0.87
   2 ?   -0.8   2.2      0.61   2.2e+03      25      50 ..     244     270 ..     240     271 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00068
       COX7a  17 plwlrgprsklylypyyalfavgllgs 43 
                  +wl g    +++ py+++ av ++++
  CCE30485.1 138 LIWLAGQFKDMIVFPYLIIIAVIFAFI 164
                 79********************99887 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.61
       COX7a  25 sklylypy.yalfavgllgslygmyrm 50 
                 s++ ++ + +al+++ ++g l+++  m
  CCE30485.1 244 SAMAMGWFsFALLIIVTIGLLVMILSM 270
                 788899999999999999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1010  (0.0563333); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 1944.78
//
Query:       CCE30486.1  [L=894]
Description: related to class I alpha-mannosidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-172  575.0   0.0   1.6e-172  574.5   0.0    1.2  1  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  574.5   0.0  9.1e-177  1.6e-172       2     457 ..     189     889 ..     188     890 .. 0.98

  Alignments for each domain:
  == domain 1  score: 574.5 bits;  conditional E-value: 9.1e-177
                     HHHHHHHHHHHCTTSSEEETTTTEEE-SS.SS-CCHHHHHHHHHHCCHHHHHHHHHHHHHHC----S.SS.EEEHHHHHHHHHHHHHHHHHHH.. CS
  Glyco_hydro_47   2 fkhswegYkkyAwghDelrPlskkgrdtfgglgatlvDsLdtllimglkeefeeaveavekkidfdtsdskevsvFEttIRyLGGLlsaydls.. 94 
                     +++sw gYk+yAw+hDe++P+s++ rd+f+g++atlvDsLdtl+i glk+ef+ea  av+  idf+ +++++++vFEttIRyLGGLl+ayd+s  
      CCE30486.1 189 IQRSWAGYKQYAWMHDEITPVSNRSRDPFCGWAATLVDSLDTLWIAGLKDEFDEAAAAVK-IIDFTYTNRSTIPVFETTIRYLGGLLAAYDVSgg 282
                     689*********************************************************.9*******************************99 PP

                     ..S-HHHHHHHHHHHHHHHHGGGSSTTS---SEEETTT--EE-.STCGCEEEHHHHCSSHHHHHHHHHHHT-CHHHHHHHCCHHHHHCHC.C.HH CS
  Glyco_hydro_47  95 .ekkedvllekAveladrLlpAFdtpsglpvarvnlkkrkaskkerassesvlAelgslslEftrLsqlTgdkkYedlaervtkaleelq.ektk 187
                      ++++ +ll+kAvela++L++ Fdtp+++pv +++++++++s+++ra+ ++ +Ae+++ls+EftrL+q+Tg ++Y+d+++r+t+al ++q + t 
      CCE30486.1 283 aSGHYSFLLDKAVELAEILMGIFDTPNRMPVLYFHWRPEDTSRPRRAR-RAGMAEIATLSMEFTRLAQVTGRHTYYDAIDRITNALIDMQrTGTL 376
                     88999**********************************999988888.5556*************************************88899 PP

                     HTTB-BSEEETTT--EES............................................................TEE-SSTTTHHHHHHHH CS
  Glyco_hydro_47 188 lpglvpikidastgkfva............................................................ekislgargDSyYEYll 222
                     +pgl+p+++d+++++++a                                                            +++++g+++DS YEY+ 
      CCE30486.1 377 IPGLFPEHLDITGCSVAAaieqklkskastkqadsasnlkerkddklprddqlpngvdghdeelgciaqglvpvdngyQEYHMGGGQDSAYEYFG 471
                     *****************88**************************************************************************** PP

                     HHHHHCTS--HHHHHHHHHHHHHHHHH.TEEE-TTT..--EEE-EECTT....CTS.EE-EEEGGGGHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
  Glyco_hydro_47 223 Kqylllggeeeqyrkmyeealdaikkhllfrpskkkeddllfvgevtst....eegklspeidhLscFlgGllalgakllekeedlelAkklteg 313
                     K+ylllgg+e++y+k+ye+++d+i+khllfrp+ +++ d++f ++v  +       ++++e++hL+cF+gG++alg+kl+++++d+e A+klt+g
      CCE30486.1 472 KEYLLLGGKESKYQKLYEDTVDGINKHLLFRPMIPDDWDIIFPARVGIKadtnVVPNIEYEVTHLTCFIGGMYALGGKLFGRQKDIEYAAKLTDG 566
                     *************************************99***999877766654567899*********************************** PP

                     HHHHHHTSTTS---SEEEE-SS.....S-ECTSSSSEEE-....................................................... CS
  Glyco_hydro_47 314 cvkayeatktglmPEifevkpcesaeecewneekkdealk....................................................... 353
                     cv+ay++t++g+mPE+ ++ pc + ++c++ne+ +++al+                                                       
      CCE30486.1 567 CVWAYQSTASGIMPESGYLVPCPTFKQCSFNETLWRQALDpladsrdqrildweaiesgkqmeqrekrkaerqkedmvrvrtdrvgkvvsaehnt 661
                     *********************************************************************************************** PP

                     ............................................................................................... CS
  Glyco_hydro_47 354 ............................................................................................... 353
                                                                                                                    
      CCE30486.1 662 fsqtsfssshvalektsalekrsvipvtpsdpnlstsrasdeevnavvaekgleygatrsqtrnkqvpeakselsalkednprhsgpakvpalks 756
                     *********************************************************************************************** PP

                     ..............................GGG--B----HHHHHHHHHHHHH--THHHHHHHHHHHHHHHHCEETTEE--ECETTSSS-EE-S- CS
  Glyco_hydro_47 354 .............................riedrkyllRPEaiESlfylYritgdekyrevgwemfealekatktesgysaledVtkeepekeDe 419
                                                  ++++++y+lRPEaiES++y+Yritgd ++ e+gw mfea +kat+t s+++a+ +V ++e+e+ D+
      CCE30486.1 757 hhsqrprkppthqefveeqiqkgvprgfsSVSSKQYILRPEAIESVWYMYRITGDASWMEKGWAMFEATMKATRTPSANTAIANVLSQEHEPLDT 851
                     *********************************************************************************************** PP

                     B-HHHHHTHHHHHHHHC-S-TTT-TTTEEE-TTS-EEE CS
  Glyco_hydro_47 420 meSFwlaEtlKYlYLlFsdedvlsldeyVfnTeAHplk 457
                     meSFwlaEtlKY YLlFs+++++slde+V+nTeAHp+k
      CCE30486.1 852 MESFWLAETLKYYYLLFSESSLISLDEWVLNTEAHPFK 889
                     *************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 6141.11
//
Query:       CCE30487.1  [L=1659]
Description: related to bck1-like MAPKKK (ask1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-62  209.9   0.0    6.1e-62  209.4   0.0    1.2  1  Pkinase         Protein kinase domain
    1.8e-48  165.1   0.0    2.8e-48  164.5   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    6.2e-08   32.3   0.0      3e-06   26.8   0.0    2.3  2  Kinase-like     Kinase-like
     0.0031   16.9   0.0      0.008   15.6   0.0    1.6  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0069   15.2   0.0      0.017   14.0   0.0    1.7  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.092   12.7   0.0       0.17   11.7   0.0    1.4  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.4   0.0     2e-65   6.1e-62       4     261 ..    1368    1630 ..    1365    1634 .. 0.88

  Alignments for each domain:
  == domain 1  score: 209.4 bits;  conditional E-value: 2e-65
                  EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH........HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHH CS
     Pkinase    4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke........kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerk 92  
                   + +G+G++G+Vy +++++tg+  AvK+++++ +    +         ++ +Ei  +++l+h+niv+++++ ++++++ ++ley++gg++ + l+++
  CCE30487.1 1368 GQLIGKGTYGRVYLGMNATTGDFLAVKEVEVNAKAAGGDkskmremvAALDQEIDTMQHLDHDNIVQYLGCERKETSISIFLEYISGGSIGSCLRKH 1464
                  689**************************99876554444556678888899********************************************* PP

                  SS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHH CS
     Pkinase   93 gslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvl..keneyskkvDvWslG 184 
                  g+++e+ ++++++q+l+gl+ylH++gi+HrDlK +NiL+d +g  Ki+DFG++k+ ++       +s+ g+  ++APEv+  ++++ys+kvD+WslG
  CCE30487.1 1465 GKFEESVVSSLTRQTLSGLAYLHREGILHRDLKADNILLDLDGTCKISDFGISKKTDNIYGndkSNSMQGSVFWMAPEVIrsEAEGYSAKVDIWSLG 1561
                  ******************************************************99987666679***************877799*********** PP

                  HHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase  185 vilyelltgkppfsgekgkekvekeldqlekilkilg..etkeklpeaseiseeakdllkkllkkdpkkRltaeellqh 261 
                  ++++e+++g+ p+s+e+        +    +i+ki +  +     + +++i + a  ++ ++++++p +R+ta+ ll++
  CCE30487.1 1562 CVVLEMFAGRRPWSKEEA-------VG---AIYKIANgeTPPIPEDVQETIAPLAVAFMMDCFSVNPLDRPTADVLLSQ 1630
                  **************3333.......33...3555655323344455678889*********************988753 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.5   0.0   9.3e-52   2.8e-48       4     255 ..    1368    1627 ..    1366    1630 .. 0.91

  Alignments for each domain:
  == domain 1  score: 164.5 bits;  conditional E-value: 9.3e-52
                   EEEEEEESSEEEEEEEEET...TTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr    4 gkklGeGafGkVvegtlkg...ekekkevkVavKtl..keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrk 94  
                   g+ +G+G++G+V+ g   +       kev+V  K    ++++++e  ++l +e+++m++l+h+niv++lg+  ke ++ i +ey++gG++ + Lrk
   CCE30487.1 1368 GQLIGKGTYGRVYLGMNATtgdFLAVKEVEVNAKAAggDKSKMREMVAALDQEIDTMQHLDHDNIVQYLGCERKETSISIFLEYISGGSIGSCLRK 1463
                   5789***********9887666667788999999986556666667889999******************************************** PP

                   TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHH CS
  Pkinase_Tyr   95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDv 188 
                   +   k++ + + s++ q  +G++yL+++ ++Hrdl a N+Ll+ + ++kisDfG+++++ +     k+++ + +v WmapE+++++   ++ k D+
   CCE30487.1 1464 H--GKFEESVVSSLTRQTLSGLAYLHREGILHRDLKADNILLDLDGTCKISDFGISKKTDNIYGNDKSNSMQGSVFWMAPEVIRSEAegYSAKVDI 1557
                   9..9*******************************************************6666668899999***********998888******* PP

                   HHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHH....HHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr  189 WsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyel....mkkcweedpeeRptfsel 255 
                   Ws G ++ E+f  g++p+++ ++  ++ k+ +g+  + pe+++e+++ l    m++c++ +p +Rpt   l
   CCE30487.1 1558 WSLGCVVLEMFA-GRRPWSKEEAVGAIYKIANGETPPIPEDVQETIAPLavafMMDCFSVNPLDRPTADVL 1627
                   ***********9.********************************98544444*************98766 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.019        58      15      67 ..    1366    1418 ..    1358    1433 .. 0.90
   2 !   26.8   0.0     1e-09     3e-06     138     274 ..    1464    1599 ..    1441    1605 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.019
  Kinase-like   15 vrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelair 67  
                    +g+l++kg  + v++  +  tg+ lavk   ++++a+  d  +++e + a+ 
   CCE30487.1 1366 FKGQLIGKGTYGRVYLGMNATTGDFLAVKEVEVNAKAAGGDKSKMREMVAALD 1418
                   589*******************************************9877665 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1e-09
  Kinase-like  138 hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve......kgfaPpEllgsrggytrknktkm 227 
                   h k e+     lT q +   a+L+ +g++h ++++dn+lld +g  ++ +f+   +  + +  +         + +  pE++ s       +   +
   CCE30487.1 1464 HGKFEESVVSSLTRQTLSGLAYLHREGILHRDLKADNILLDLDGTCKISDFGISKKTDNIYG-NDKSnsmqgsVFWMAPEVIRS-------EAEGY 1551
                   55666666677899999999*******************************98877665554.333212334444567777776.......44578 PP

  Kinase-like  228 thkldaWqlGlviyriwclklPltlateeake.ewkfklckkipekvk 274 
                   + k+d W lG v++ + +   P  + +  + + +       +ipe v+
   CCE30487.1 1552 SAKVDIWSLGCVVLEMFAGRRPWSKEEAVGAIyKIANGETPPIPEDVQ 1599
                   99***************9999998765544330223333346666666 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.3     7e+03      12      40 ..    1301    1328 ..    1297    1339 .. 0.77
   2 !   15.6   0.0   2.7e-06     0.008     104     166 ..    1456    1514 ..    1445    1529 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.3
         Kdo   12 eeaegRrttwfvvaekvnaalrkyyrggl 40  
                   ea++R+t +++ + + n++   ++r+ +
  CCE30487.1 1301 HEANKRYTSASQPTDN-NSQTNLLRRKST 1328
                  6999999999999888.888888888753 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.7e-06
         Kdo  104 dLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166 
                  ++  +l+k+ +++e++   l +++    a lhr g+ H+dl a nill+ ++    ++ + D+
  CCE30487.1 1456 SIGSCLRKHGKFEESVVSSLTRQTLSGLAYLHREGILHRDLKADNILLDLDG----TCKISDF 1514
                  67789999999999999999999999***********************998....5655555 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   5.5e-06     0.017     313     389 ..    1477    1547 ..    1264    1565 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.5e-06
  Pkinase_fungal  313 rDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkge 389 
                      r+ + g+  L+   giLHrD  ++Nil+       + +  ++D+ + k++++   +++++   G + +ma ev++ e
      CCE30487.1 1477 RQTLSGLAYLH-REGILHRDLKADNILLD-----LDGTCKISDFGISKKTDNIYGNDKSNSMQGSVFWMAPEVIRSE 1547
                      677889999**.9***************9.....6788889***********9999999*************99964 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.8e-05      0.17     150     184 ..    1469    1508 ..    1439    1521 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.8e-05
                  HHHHHHHHHH--S....SS-EEEE-SS-SGGGEEEC...T CS
         APH  150 eqvlaalaallpg....elptvllHgDlhpgNllvd.pdd 184 
                  e v   l +  ++      ++++lH+Dl+ +N+l+d ++ 
  CCE30487.1 1469 ESVVSSLTRQTLSglayLHREGILHRDLKADNILLDlDGT 1508
                  55444444444445666789****************5444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.01u 0.34s 00:00:01.35 Elapsed: 00:00:00.50
# Mc/sec: 9957.35
//
Query:       CCE30488.1  [L=771]
Description: uncharacterized protein CPUR_04336 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-20   72.9   0.0    5.8e-20   71.6   0.0    1.7  1  Glyco_hydro_5_C  Glycoside hydrolase family 5 C-terminal doma
    2.3e-11   43.7   0.4      1e-08   35.0   0.2    2.6  2  Cellulase        Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_5_C  Glycoside hydrolase family 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   6.5e-24   5.8e-20       1      87 []     645     734 ..     645     734 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 6.5e-24
  Glyco_hydro_5_C   1 RPyPakvaGtplsfsfdlktgeftlewtadkssaedseTeIflPelhyp.kgrkvevsggkwey....deerqtlyvvwahsepgeqhtvtV 87 
                      RP+P+ vaG++  ++fdl+ + ++l+++a+k+++e+++T +f+Pe+h+p ++++v+vs gkwe+    +e+  +++++w+h e geq ++tV
       CCE30488.1 645 RPTPTVVAGNVSYTGFDLRRCVYELKIRASKAAEETAPTTVFVPEFHFPqDQCEVTVSAGKWELssddSEGPMLQRLKWWHPE-GEQ-SLTV 734
                      9************************************************99************9999778999*********9.999.8887 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.2   1.2e-12     1e-08      28     135 ..      71     252 ..      58     271 .. 0.79
   2 !    5.9   0.0   0.00084       7.5     187     251 ..     410     506 ..     381     543 .. 0.67

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.2e-12
                 HHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS...........TTT......CSSSSTTTTHHHHHHH..... CS
   Cellulase  28 devkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHse...........egw......ltkadgnssedtaeef..... 104
                 + +k  gfnt+R  ++w+ + +++p++ +de+ ++   e++ +ak+ g+ v+ d+H++           + w      l++ ++ ++e++         
  CCE30488.1  71 ARLKRYGFNTIRYIFTWEAIESAGPGI-YDEDFIQHTIEILRLAKSYGFFVFMDPHQDvwsrftggsgaPMWtlyacgLNPRSFAATEAA---Ivqnty 165
                 678899***********9999999999.*****************************988888888888666877666333333333333...133355 PP

                 ...................................................HHHHHHHHHHHHT.....TTTTTEEEESSSS--STT CS
   Cellulase 105 ...................................................fkklwtqiAeryk.....kndevvifelmNEPhgnn 135
                                                                    f ++++ +A+r        nd+vv++e mNEP+ + 
  CCE30488.1 166 pkpddfpkmiwstnyhrlaagtmftlffagkdfapkciidgmniqdylqdhFCNACAHLAKRIHeagdlENDPVVGWESMNEPNRGM 252
                 66666688888888899999999999999999999999999999999888855567777777654444489************9865 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.00084
                 G.....SSSSTTEEEEEEEETTTHHHTGCGS........................HSCTHHHHHHHHHHHHHHH.HHHTTS.EEEEEEEESS.TTSS CS
   Cellulase 187 P.....ndsqdnliysvHfYgpsdfaqtefg........................kdltdktnlaqrledaaky.lvekgi.pviigEfGgs.nadg 251
                 P     +d +  +++++HfY++   + ++ +                         +   ++ l+++l+++ +  l + g+ p +++EfG   ++d+
  CCE30488.1 410 PeikgtEDDDPMMAFTPHFYDGITLMTKHWNstwnvdvvgvlrgkylhpafaikiGESAIRNCLRDQLASLRQEgLDRTGKhPCLLTEFGIPyDMDE 506
                 14444323356789*******8887665555699999999999999999997777555555555555555544414555677999999998744444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 5554.75
//
Query:       CCE30489.1  [L=1424]
Description: related to SKI3-antiviral protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-34  113.8  32.5     0.0085   16.1   0.3   16.3 17  TPR_2     Tetratricopeptide repeat
    1.6e-33  115.1  32.0    1.4e-06   28.9   0.1   11.7 11  TPR_16    Tetratricopeptide repeat
    6.4e-33  111.2  14.2     0.0014   18.4   0.0   13.7 14  TPR_1     Tetratricopeptide repeat
    3.6e-29  101.1  18.3    2.7e-06   27.8   0.6   10.5 10  TPR_19    Tetratricopeptide repeat
    1.2e-28   96.9  13.9     0.0014   18.7   0.3   14.1 14  TPR_8     Tetratricopeptide repeat
    1.3e-27   94.1  23.1      0.022   15.5   0.0   15.5 15  TPR_14    Tetratricopeptide repeat
    1.6e-18   65.6   8.4       0.23   11.9   0.0   13.1 13  TPR_17    Tetratricopeptide repeat
    1.1e-17   64.1  34.3     0.0036   17.6   0.3   12.4 14  TPR_12    Tetratricopeptide repeat
    2.9e-17   62.0  15.5      0.016   14.9   0.0    9.0  9  TPR_11    TPR repeat
    2.1e-14   52.4  20.9      0.075   13.1   0.1   12.7 11  TPR_7     Tetratricopeptide repeat
    3.2e-08   33.7  32.1        0.4   11.4   0.0   14.2 14  TPR_6     Tetratricopeptide repeat
    1.3e-07   31.6   0.0    4.2e-07   30.0   0.0    2.0  1  TPR_22    Tetratricopeptide repeat
    6.6e-07   29.4   6.6        1.4    9.1   0.2    8.0  8  TPR_9     Tetratricopeptide repeat
    1.2e-06   28.7  12.7       0.35   11.1   0.1    7.0  5  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
    5.1e-06   26.6   6.1        1.8    8.8   0.0    6.4  6  HemY_N    HemY protein N-terminus
    6.2e-06   26.4  18.3         19    6.3   0.0   10.8 11  TPR_4     Tetratricopeptide repeat
      1e-05   25.1  18.4      0.075   12.4   0.3    6.6  7  TPR_MalT  MalT-like TPR region
    5.2e-05   23.0  15.0        2.6    8.0   0.2    8.7  9  TPR_10    Tetratricopeptide repeat
     0.0021   18.0   0.1      0.012   15.6   0.1    2.2  2  DUF4919   Domain of unknown function (DUF4919)
     0.0045   15.8   0.4     0.0087   14.9   0.4    1.4  1  Cas_Csm6  CRISPR-associated protein (Cas_Csm6)
     0.0097   14.9   1.9         13    4.7   0.0    4.5  6  ChAPs     ChAPs (Chs5p-Arf1p-binding proteins)
  ------ inclusion threshold ------
      0.019   15.0   2.7         20    5.3   0.1    6.0  6  MIT       MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.34   2.7e+02      13      33 ..      17      37 ..      13      38 .. 0.87
   2 !   16.1   0.3     1e-05    0.0085       3      34 .]      41      72 ..      39      72 .. 0.93
   3 ?    2.8   0.0      0.19   1.5e+02       9      31 ..     433     456 ..     426     459 .. 0.80
   4 !   13.2   0.0     9e-05     0.073       3      32 ..     462     491 ..     460     493 .. 0.89
   5 ?   -2.5   0.0       9.9   8.1e+03      12      28 ..     505     521 ..     499     521 .. 0.78
   6 ?   -0.2   0.0       1.8   1.5e+03       1      22 [.     537     558 ..     537     559 .. 0.84
   7 !    8.0   0.1    0.0042       3.4      11      30 ..     591     610 ..     589     612 .. 0.87
   8 ?   -0.5   0.0       2.3   1.8e+03       5      19 ..     619     633 ..     616     642 .. 0.86
   9 !   14.3   0.0   4.1e-05     0.033       6      34 .]     664     692 ..     662     692 .. 0.94
  10 ?    4.5   0.0     0.054        44       4      31 ..     696     723 ..     694     726 .. 0.90
  11 !   10.9   0.0   0.00048       0.4       5      32 ..     739     766 ..     735     768 .. 0.90
  12 ?   -0.7   0.1       2.6   2.1e+03       2      10 ..     914     922 ..     910     926 .. 0.69
  13 ?   -2.5   0.0       9.5   7.8e+03      23      33 ..     948     958 ..     946     959 .. 0.84
  14 !   13.6   0.0   6.8e-05     0.055       3      33 ..     995    1025 ..     993    1026 .. 0.93
  15 !   10.1   0.0   0.00087      0.71       1      31 [.    1027    1057 ..    1027    1060 .. 0.92
  16 !   10.6   0.2   0.00061       0.5       7      32 ..    1159    1184 ..    1157    1186 .. 0.92
  17 !   12.6   0.0   0.00014      0.12       3      28 ..    1203    1228 ..    1201    1231 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.34
       TPR_2 13 klgdyeeAleafekAleldPn 33
                + ++y++A+e+ +  ++ dP+
  CCE30489.1 17 RGQQYDDAVELARSLVKRDPK 37
                5689***************97 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1e-05
       TPR_2  3 alynlGlayyklgdyeeAleafekAleldPnn 34
                +l  l+ a++++++++eA+ +++kA el P++
  CCE30489.1 41 GLIFLAFALENKNQLDEAESFYKKASELRPKD 72
                57889*************************86 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.19
       TPR_2   9 layyklgdy.eeAleafekAleld 31 
                 l+y+++ +y +eA+ +f+++le d
  CCE30489.1 433 LVYFQSPRYhQEAKSLFDRVLEQD 456
                 6677777777***********987 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 9e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 al   Gl+ ++  +y++A++++e+Al+ d 
  CCE30489.1 462 ALIGVGLIFEEEEEYDQAIDFLERALKRDG 491
                 788889*********************986 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 9.9
       TPR_2  12 yklgdyeeAleafekAl 28 
                 + +gd++ A++ + ++l
  CCE30489.1 505 ALKGDWQTAKDELSECL 521
                 67899**9999988876 PP

  == domain 6  score: -0.2 bits;  conditional E-value: 1.8
       TPR_2   1 aealynlGlayyklgdyeeAle 22 
                 a+  y++G+++++l+   +A++
  CCE30489.1 537 ADTQYRMGCCLWNLNSSRQARK 558
                 5678*********998888876 PP

  == domain 7  score: 8.0 bits;  conditional E-value: 0.0042
       TPR_2  11 yyklgdyeeAleafekAlel 30 
                 y + +d ++A+++f kAlel
  CCE30489.1 591 YDYVKDRKRARRCFTKALEL 610
                 56678999***********9 PP

  == domain 8  score: -0.5 bits;  conditional E-value: 2.3
       TPR_2   5 ynlGlayyklgdyee 19 
                  +l+++y++ gd+e+
  CCE30489.1 619 ERLARSYAEGGDWER 633
                 589**********96 PP

  == domain 9  score: 14.3 bits;  conditional E-value: 4.1e-05
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                 ++G a ++++++ +A+  f++Al+l Pn+
  CCE30489.1 664 AMGVAELNNQEFRKAIVSFQAALRLSPND 692
                 68999**********************97 PP

  == domain 10  score: 4.5 bits;  conditional E-value: 0.054
       TPR_2   4 lynlGlayyklgdyeeAleafekAleld 31 
                 +  lG++y  +g++  A +a   A +l+
  CCE30489.1 696 WVGLGESYHSSGRFIAATKAILNAQRLE 723
                 889*****************99999886 PP

  == domain 11  score: 10.9 bits;  conditional E-value: 0.00048
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                 y++G++ ++lg+y+e ++ ++ +++  P
  CCE30489.1 739 YMMGNIKRELGEYDESIASYQDVIATQP 766
                 899******************9998877 PP

  == domain 12  score: -0.7 bits;  conditional E-value: 2.6
       TPR_2   2 ealynlGla 10 
                  a+ynlG+a
  CCE30489.1 914 VAHYNLGWA 922
                 477777776 PP

  == domain 13  score: -2.5 bits;  conditional E-value: 9.5
       TPR_2  23 afekAleldPn 33 
                 af++A+el+ +
  CCE30489.1 948 AFKRAIELESG 958
                 699****9865 PP

  == domain 14  score: 13.6 bits;  conditional E-value: 6.8e-05
       TPR_2    3 alynlGlayyklgdyeeAleafekAleldPn 33  
                  ++ nlG +++ +gd+ +A+eaf +  + dP+
  CCE30489.1  995 GWTNLGVLALLSGDFPQAKEAFTRGQSADPE 1025
                  699*********************9999997 PP

  == domain 15  score: 10.1 bits;  conditional E-value: 0.00087
       TPR_2    1 aealynlGlayyklgdyeeAleafekAleld 31  
                  a a+  +Gl+++ +g+ +eA+ +f  A e+ 
  CCE30489.1 1027 AHAWLGQGLVALLSGNIKEARVLFTHAMEIS 1057
                  5699***********************9986 PP

  == domain 16  score: 10.6 bits;  conditional E-value: 0.00061
       TPR_2    7 lGlayyklgdyeeAleafekAleldP 32  
                  l++ay++  +ye+A++  e Al+l  
  CCE30489.1 1159 LARAYLATANYEQAVKEGETALKLSS 1184
                  89*********************975 PP

  == domain 17  score: 12.6 bits;  conditional E-value: 0.00014
       TPR_2    3 alynlGlayyklgdyeeAleafekAl 28  
                  a+  lGl  y lg+yeeA+ +fe Al
  CCE30489.1 1203 AHLTLGLGKYFLGKYEEAETCFESAL 1228
                  7899999****************998 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   1.7e-09   1.4e-06       5      67 ..      13      72 ..       9      73 .. 0.93
   2 !   14.6   0.1   4.7e-05     0.038      14      64 ..     443     490 ..     433     493 .. 0.91
   3 ?    4.2   0.7     0.086        70      11      51 ..     595     632 ..     591     644 .. 0.90
   4 !   16.9   0.1   9.4e-06    0.0076       2      53 ..     664     712 ..     663     724 .. 0.89
   5 !    7.9   0.0    0.0059       4.8       1      29 [.     739     767 ..     739     779 .. 0.91
   6 ?    1.4   0.0      0.64   5.2e+02      19      43 ..     948     969 ..     944     974 .. 0.91
   7 !   26.7   0.0     8e-09   6.5e-06       3      57 ..     999    1050 ..     997    1057 .. 0.90
   8 ?    6.8   0.4     0.013        11       2      34 ..    1158    1187 ..    1157    1192 .. 0.87
   9 !   11.4   0.0   0.00046      0.38       2      48 ..    1206    1249 ..    1205    1253 .. 0.80
  10 !    9.2   0.0    0.0024       1.9      13      47 ..    1254    1285 ..    1239    1299 .. 0.84
  11 ?   -1.6   1.3       5.7   4.7e+03       2      19 ..    1386    1403 ..    1386    1404 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1.7e-09
      TPR_16  5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67
                ++a+r ++yddA+++++ ++krd   P  ++ l +l+ a+  ++ l+eA+ +y++a +  p++
  CCE30489.1 13 NDAIRGQQYDDAVELARSLVKRD---PKSYQGLIFLAFALENKNQLDEAESFYKKASELRPKD 72
                79999******************...*****************************98888876 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 4.7e-05
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 ++A  +++++l++d       +Al + g+++ +  +++ A++++++al+ +
  CCE30489.1 443 QEAKSLFDRVLEQD---ATSTAALIGVGLIFEEEEEYDQAIDFLERALKRD 490
                 79************...77788*************************9765 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.086
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrla 51 
                 +d  +A++ ++ al++     + + A+  l++++++ g+++
  CCE30489.1 595 KDRKRARRCFTKALELS---AAEVVAAERLARSYAEGGDWE 632
                 67789************...88899**************97 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 9.4e-06
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53 
                 a++ a l+++++++A+  ++aal++    P +++++ +lg+++   gr+ +A
  CCE30489.1 664 AMGVAELNNQEFRKAIVSFQAALRLS---PNDYHSWVGLGESYHSSGRFIAA 712
                 5677899*******************...***************99998555 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.0059
      TPR_16   1 lalaraalragdyddAaaaleaalkrdps 29 
                 ++++++ +++g+yd+ +a ++ +++ +p+
  CCE30489.1 739 YMMGNIKRELGEYDESIASYQDVIATQPG 767
                 899**********************9955 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.64
      TPR_16  19 aleaalkrdpssPdaaeAllllgda 43 
                 a+++a+++    + +a+++++lg++
  CCE30489.1 948 AFKRAIELE---SGNADFWNALGVI 969
                 799******...***********97 PP

  == domain 7  score: 26.7 bits;  conditional E-value: 8e-09
      TPR_16    3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaaly 57  
                  l+ +al +gd+++A +a+++   +d   P+ a+A+l+ g++al  g+ +eA+ l+
  CCE30489.1  999 LGVLALLSGDFPQAKEAFTRGQSAD---PEYAHAWLGQGLVALLSGNIKEARVLF 1050
                  66677779*****************...***********************9665 PP

  == domain 8  score: 6.8 bits;  conditional E-value: 0.013
      TPR_16    2 alaraalragdyddAaaaleaalkrdpssPdaa 34  
                  +lara+l+  +y++A++  e+alk+    +da 
  CCE30489.1 1158 DLARAYLATANYEQAVKEGETALKLS---SDAT 1187
                  79*********************998...6665 PP

  == domain 9  score: 11.4 bits;  conditional E-value: 0.00046
      TPR_16    2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqg 48  
                   l++  + +g+y++A+  +e al   + sPd      ll++++++qg
  CCE30489.1 1206 TLGLGKYFLGKYEEAETCFESALGESGNSPD---TTCLLAQVLWAQG 1249
                  567778899*****************99999...5666666666655 PP

  == domain 10  score: 9.2 bits;  conditional E-value: 0.0024
      TPR_16   13 yddAaaaleaalkrdpssPdaaeAllllgdaalrq 47  
                   d+A++al  +++++   Pd++++ lllg++al  
  CCE30489.1 1254 RDRAREALFGVIESQ---PDHVQSVLLLGVVALLD 1285
                  589999999******...**************965 PP

  == domain 11  score: -1.6 bits;  conditional E-value: 5.7
      TPR_16    2 alaraalragdyddAaaa 19  
                  +la+a++  g+ +dA++a
  CCE30489.1 1386 DLAKAYAGTGKAADAQRA 1403
                  58999**********987 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4   1.3e-05     0.011       6      34 .]      44      72 ..      39      72 .. 0.90
   2 ?   -2.1   0.0         5   4.1e+03      17      31 ..     442     456 ..     442     458 .. 0.88
   3 !   18.4   0.0   1.7e-06    0.0014       3      33 ..     462     492 ..     460     493 .. 0.90
   4 ?    0.4   0.0      0.82   6.6e+02       1      20 [.     537     556 ..     537     558 .. 0.83
   5 ?    4.5   0.1      0.04        33      12      30 ..     592     610 ..     590     611 .. 0.84
   6 !   14.7   0.0   2.5e-05     0.021       7      34 .]     665     692 ..     662     692 .. 0.94
   7 ?    2.0   0.0      0.25   2.1e+02       4      27 ..     696     719 ..     694     723 .. 0.83
   8 !   12.7   0.0   0.00011     0.087       5      32 ..     739     766 ..     736     767 .. 0.90
   9 ?    0.5   0.1      0.77   6.3e+02       1      10 [.     913     922 ..     913     925 .. 0.85
  10 ?   -1.0   0.0       2.2   1.8e+03      23      32 ..     948     957 ..     948     959 .. 0.82
  11 !   15.7   0.0   1.2e-05    0.0099       3      34 .]     995    1026 ..     993    1026 .. 0.93
  12 ?    5.1   0.0     0.027        22       3      32 ..    1029    1058 ..    1027    1060 .. 0.91
  13 ?    0.2   0.0      0.97   7.9e+02       7      22 ..    1159    1174 ..    1155    1184 .. 0.85
  14 !   12.1   0.0   0.00016      0.13       3      28 ..    1203    1228 ..    1201    1230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-05
                HHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  6 nlGnayfklgkydeAleyyekALelnPnn 34
                 l+ a+ +++++deA+ +y+kA el+P++
  CCE30489.1 44 FLAFALENKNQLDEAESFYKKASELRPKD 72
                5899***********************86 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5
                 HHHHHHHHHHHHHHS CS
       TPR_1  17 ydeAleyyekALeln 31 
                 ++eA   ++++Le +
  CCE30489.1 442 HQEAKSLFDRVLEQD 456
                 589*********987 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                 al + G+++ + ++yd+A+++ e+AL+ + +
  CCE30489.1 462 ALIGVGLIFEEEEEYDQAIDFLERALKRDGS 492
                 77788**********************9966 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.82
                 HHHHHHHHHHHHHTT-HHHH CS
       TPR_1   1 akalynlGnayfklgkydeA 20 
                 a++ y++G ++ +l+   +A
  CCE30489.1 537 ADTQYRMGCCLWNLNSSRQA 556
                 7899*******999866666 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.04
                 HHTT-HHHHHHHHHHHHHH CS
       TPR_1  12 fklgkydeAleyyekALel 30 
                  + ++ + A  ++ kALel
  CCE30489.1 592 DYVKDRKRARRCFTKALEL 610
                 56677889**********8 PP

  == domain 6  score: 14.7 bits;  conditional E-value: 2.5e-05
                 HHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPnn 34 
                 +G+a ++++++ +A+  ++ AL+l Pn+
  CCE30489.1 665 MGVAELNNQEFRKAIVSFQAALRLSPND 692
                 79999*********************97 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.25
                 HHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekA 27 
                 + +lG  y++ g++  A ++   A
  CCE30489.1 696 WVGLGESYHSSGRFIAATKAILNA 719
                 899***********9998876666 PP

  == domain 8  score: 12.7 bits;  conditional E-value: 0.00011
                 HHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnP 32 
                 y +Gn+ ++lg+yde ++ y+ ++  +P
  CCE30489.1 739 YMMGNIKRELGEYDESIASYQDVIATQP 766
                 789******************9998776 PP

  == domain 9  score: 0.5 bits;  conditional E-value: 0.77
                 HHHHHHHHHH CS
       TPR_1   1 akalynlGna 10 
                 a a+ynlG a
  CCE30489.1 913 AVAHYNLGWA 922
                 689*****87 PP

  == domain 10  score: -1.0 bits;  conditional E-value: 2.2
                 HHHHHHHHST CS
       TPR_1  23 yyekALelnP 32 
                 ++++A+el+ 
  CCE30489.1 948 AFKRAIELES 957
                 69*****986 PP

  == domain 11  score: 15.7 bits;  conditional E-value: 1.2e-05
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1    3 alynlGnayfklgkydeAleyyekALelnPnn 34  
                   + nlG++ +  g++ +A e++ +  + +P++
  CCE30489.1  995 GWTNLGVLALLSGDFPQAKEAFTRGQSADPEY 1026
                  7***********************99999986 PP

  == domain 12  score: 5.1 bits;  conditional E-value: 0.027
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1    3 alynlGnayfklgkydeAleyyekALelnP 32  
                  a+ + G++ +  g+ +eA   +  A e+ +
  CCE30489.1 1029 AWLGQGLVALLSGNIKEARVLFTHAMEISE 1058
                  9**********************9999865 PP

  == domain 13  score: 0.2 bits;  conditional E-value: 0.97
                  HHHHHHHTT-HHHHHH CS
       TPR_1    7 lGnayfklgkydeAle 22  
                  l+ ay+   +y++A++
  CCE30489.1 1159 LARAYLATANYEQAVK 1174
                  889999999****986 PP

  == domain 14  score: 12.1 bits;  conditional E-value: 0.00016
                  HHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1    3 alynlGnayfklgkydeAleyyekAL 28  
                  a+  lG+  + lgky+eA+ ++e AL
  CCE30489.1 1203 AHLTLGLGKYFLGKYEEAETCFESAL 1228
                  67778888899************998 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.6   3.4e-09   2.7e-06       5      62 ..      19      76 ..      15      87 .. 0.90
   2 ?    1.8   0.0      0.44   3.6e+02       7      29 ..     442     464 ..     440     467 .. 0.78
   3 !   17.5   0.1   5.4e-06    0.0044       3      53 ..     472     522 ..     470     532 .. 0.90
   4 ?    0.8   0.0       0.9   7.3e+02       8      45 ..     598     635 ..     595     646 .. 0.83
   5 !   10.7   0.0   0.00074       0.6       4      56 ..     672     725 ..     669     731 .. 0.84
   6 ?    0.7   0.1      0.95   7.8e+02      17      57 ..     726     767 ..     714     777 .. 0.73
   7 !   16.6   0.0     1e-05    0.0084       2      53 ..    1004    1055 ..    1003    1062 .. 0.91
   8 !   10.4   0.1   0.00089      0.72      21      47 ..    1149    1175 ..    1118    1189 .. 0.73
   9 !   15.5   0.0   2.3e-05     0.019       5      63 ..    1215    1274 ..    1214    1278 .. 0.85
  10 ?   -1.3   0.2         4   3.3e+03      30      47 ..    1386    1403 ..    1358    1405 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 3.4e-09
      TPR_19  5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddarya 62
                ++y++A++l +++ + dpk+   ++ LA al + +qldeAe   +++ e  p+d+++ 
  CCE30489.1 19 QQYDDAVELARSLVKRDPKSYQGLIFLAFALENKNQLDEAESFYKKASELRPKDSQAF 76
                79*****************9999999***************************96654 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.44
      TPR_19   7 yaeAlalleqalqedpknaearl 29 
                 ++eA +l+ ++l++d+ + +a++
  CCE30489.1 442 HQEAKSLFDRVLEQDATSTAALI 464
                 67888888888888888777765 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 5.4e-06
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpe 53 
                 +e+ y++A+++le+al+ d  n+++r   A +    g+++ A++ L++ ++
  CCE30489.1 472 EEEEYDQAIDFLERALKRDGSNLRVRSEAAWVKALKGDWQTAKDELSECLP 522
                 6899****************************************9987655 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.9
      TPR_19   8 aeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                  +A + +++al+ ++    a+ +LA+ + + g+++  e
  CCE30489.1 598 KRARRCFTKALELSAAEVVAAERLARSYAEGGDWERVE 635
                 67889999********999**9********99998755 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00074
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeA.ealLdalpeedp 56 
                 ++ +  A+  +++al  +p++   + +L e + ++g++ +A +a+L+a  +e++
  CCE30489.1 672 NQEFRKAIVSFQAALRLSPNDYHSWVGLGESYHSSGRFIAAtKAILNAQRLENQ 725
                 688999*******************************98884556666666655 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.95
      TPR_19  17 alqedpknaearl.lLAeallalgqldeAealLdalpeedpd 57 
                 a ++ p + +     + ++  +lg++de +a  +++ + +p 
  CCE30489.1 726 AGADVPADTWFTKyMMGNIKRELGEYDESIASYQDVIATQPG 767
                 666666666655426699999999999999999988888776 PP

  == domain 7  score: 16.6 bits;  conditional E-value: 1e-05
      TPR_19    2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpe 53  
                  l +gd+ +A +++++  ++dp++a a+l+   + l +g+++eA+ l   ++e
  CCE30489.1 1004 LLSGDFPQAKEAFTRGQSADPEYAHAWLGQGLVALLSGNIKEARVLFTHAME 1055
                  778*****************************************99887776 PP

  == domain 8  score: 10.4 bits;  conditional E-value: 0.00089
      TPR_19   21 dpknaearllLAeallalgqldeAeal 47  
                   ++    r +LA+a+la+ ++++A + 
  CCE30489.1 1149 FAQFTLTRTDLARAYLATANYEQAVKE 1175
                  667788899***************986 PP

  == domain 9  score: 15.5 bits;  conditional E-value: 2.3e-05
      TPR_19    5 gdyaeAlalleqalqedpknaearllLAeallalgql...deAealLdalpeedpddaryas 63  
                  g+y+eA   +e+al e+ ++++   lLA++l+a+g     d A+++L  + e++pd   ++s
  CCE30489.1 1215 GKYEEAETCFESALGESGNSPDTTCLLAQVLWAQGSEdsrDRAREALFGVIESQPD--HVQS 1274
                  89********************************9752226799999999999999..5554 PP

  == domain 10  score: -1.3 bits;  conditional E-value: 4
      TPR_19   30 lLAeallalgqldeAeal 47  
                  +LA+a+  +g  ++A+++
  CCE30489.1 1386 DLAKAYAGTGKAADAQRA 1403
                  799*******99999875 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       6.3   5.2e+03      16      33 ..      20      37 ..      18      38 .. 0.89
   2 !   18.7   0.3   1.7e-06    0.0014       4      34 .]      42      72 ..      39      72 .. 0.91
   3 ?   -1.9   0.0       6.7   5.5e+03      17      31 ..     442     456 ..     440     458 .. 0.85
   4 !   11.1   0.0   0.00045      0.37       7      32 ..     466     491 ..     461     493 .. 0.87
   5 ?    1.9   0.0      0.43   3.5e+02       1      22 [.     537     558 ..     537     559 .. 0.88
   6 ?    5.3   0.0     0.034        28      11      32 ..     591     612 ..     580     614 .. 0.86
   7 ?    6.1   0.0     0.019        15       8      34 .]     666     692 ..     662     692 .. 0.87
   8 ?    4.7   0.0     0.051        42       2      31 ..     694     723 ..     693     725 .. 0.89
   9 !   13.1   0.0   0.00011     0.087       5      30 ..     739     764 ..     737     767 .. 0.89
  10 !    7.3   0.0    0.0076       6.2       4      33 ..     996    1025 ..     994    1026 .. 0.95
  11 ?    4.5   0.0     0.059        48       1      32 [.    1027    1058 ..    1027    1060 .. 0.93
  12 !    7.7   0.1    0.0057       4.7       6      32 ..    1158    1184 ..    1155    1185 .. 0.91
  13 !    8.7   0.0    0.0026       2.2      12      29 ..    1212    1229 ..    1201    1233 .. 0.81
  14 ?   -2.0   0.0       7.1   5.8e+03       9      25 ..    1354    1370 ..    1353    1374 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 6.3
                -HHHHHHHHHHHHHHHHH CS
       TPR_8 16 dyeeAkeyyekaleldpd 33
                +y+ A+e  +  ++ dp+
  CCE30489.1 20 QYDDAVELARSLVKRDPK 37
                899999999999999997 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.7e-06
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  4 yynlgsiylklgdyeeAkeyyekaleldpdn 34
                +  l+ +++++++++eA+++y+ka el+p++
  CCE30489.1 42 LIFLAFALENKNQLDEAESFYKKASELRPKD 72
                667999***********************96 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 6.7
                 HHHHHHHHHHHHHHH CS
       TPR_8  17 yeeAkeyyekaleld 31 
                 ++eAk+ + ++le d
  CCE30489.1 442 HQEAKSLFDRVLEQD 456
                 79*********9976 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.00045
                 HHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldp 32 
                  g+i ++ ++y++A+ ++e+al+ d 
  CCE30489.1 466 VGLIFEEEEEYDQAIDFLERALKRDG 491
                 6999*******************986 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.43
                 CCHHHHHHHHHHHTT-HHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAke 22 
                 a+  y++g+++++l+   +A +
  CCE30489.1 537 ADTQYRMGCCLWNLNSSRQARK 558
                 56789**********9999975 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.034
                 HHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyekaleldp 32 
                 y+  +d + A  ++ kalel+ 
  CCE30489.1 591 YDYVKDRKRARRCFTKALELSA 612
                 7778999*************86 PP

  == domain 7  score: 6.1 bits;  conditional E-value: 0.019
                 HHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldpdn 34 
                 g + l+ +++ +A+ +++ al+l+p++
  CCE30489.1 666 GVAELNNQEFRKAIVSFQAALRLSPND 692
                 6677888999***************96 PP

  == domain 8  score: 4.7 bits;  conditional E-value: 0.051
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleld 31 
                 ++++ lg  y++ g++ +A +++  a +l+
  CCE30489.1 694 HSWVGLGESYHSSGRFIAATKAILNAQRLE 723
                 79******************9999888876 PP

  == domain 9  score: 13.1 bits;  conditional E-value: 0.00011
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekalel 30 
                 y++g+i ++lg+y+e++++y+ ++  
  CCE30489.1 739 YMMGNIKRELGEYDESIASYQDVIAT 764
                 99******************999865 PP

  == domain 10  score: 7.3 bits;  conditional E-value: 0.0076
                  HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8    4 yynlgsiylklgdyeeAkeyyekaleldpd 33  
                  + nlg + l  gd+ +Ake++ +  ++dp+
  CCE30489.1  996 WTNLGVLALLSGDFPQAKEAFTRGQSADPE 1025
                  99**************************97 PP

  == domain 11  score: 4.5 bits;  conditional E-value: 0.059
                  CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8    1 aeayynlgsiylklgdyeeAkeyyekaleldp 32  
                  a+a++  g++ l  g+++eA   + +a e+++
  CCE30489.1 1027 AHAWLGQGLVALLSGNIKEARVLFTHAMEISE 1058
                  689999***********************987 PP

  == domain 12  score: 7.7 bits;  conditional E-value: 0.0057
                  HHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8    6 nlgsiylklgdyeeAkeyyekaleldp 32  
                   l+++yl + +ye+A++  e al+l+ 
  CCE30489.1 1158 DLARAYLATANYEQAVKEGETALKLSS 1184
                  69*********************9986 PP

  == domain 13  score: 8.7 bits;  conditional E-value: 0.0026
                  HHTT-HHHHHHHHHHHHH CS
       TPR_8   12 lklgdyeeAkeyyekale 29  
                    lg+yeeA+ ++e al 
  CCE30489.1 1212 YFLGKYEEAETCFESALG 1229
                  679***********9985 PP

  == domain 14  score: -2.0 bits;  conditional E-value: 7.1
                  HHHHHTT-HHHHHHHHH CS
       TPR_8    9 siylklgdyeeAkeyye 25  
                  s+ + +gd ++A+ +++
  CCE30489.1 1354 SLAEATGDSHAAQMALR 1370
                  677899******99987 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1    0.0009      0.73      12      43 ..      16      47 ..       5      48 .. 0.88
   2 !   11.7   0.0   0.00047      0.38       7      43 ..      45      81 ..      41      82 .. 0.90
   3 ?   -1.6   0.0       8.9   7.3e+03      22      36 ..     293     307 ..     292     310 .. 0.85
   4 ?    4.7   0.0     0.081        66       4      39 ..     428     464 ..     426     469 .. 0.82
   5 !   12.4   0.2   0.00027      0.22       9      40 ..     468     499 ..     462     505 .. 0.86
   6 ?    4.6   0.2     0.089        73      15      43 ..     595     623 ..     582     640 .. 0.90
   7 !   11.8   0.0   0.00043      0.35       5      42 ..     663     700 ..     659     719 .. 0.91
   8 !   15.5   0.0   2.7e-05     0.022       5      43 ..     739     777 ..     735     778 .. 0.91
   9 ?    1.8   0.0      0.69   5.6e+02      17      43 ..     942     968 ..     937     969 .. 0.87
  10 ?    6.4   0.0     0.023        19       8      39 ..    1000    1031 ..     994    1052 .. 0.90
  11 ?    1.0   0.0       1.3     1e+03       8      30 ..    1113    1135 ..    1110    1139 .. 0.85
  12 ?    5.3   0.2     0.054        44       5      31 ..    1157    1183 ..    1154    1191 .. 0.86
  13 !    7.8   0.0    0.0081       6.6       3      43 ..    1203    1243 ..    1201    1244 .. 0.89
  14 ?    4.1   0.0      0.13   1.1e+02       6      41 ..    1240    1278 ..    1235    1281 .. 0.79
  15 ?   -1.1   0.1         6   4.9e+03       6      27 ..    1386    1403 ..    1383    1417 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0009
      TPR_14 12 lalGdpdeAiallrralalaPddaeawlllaq 43
                 + +++d+A++l+r +++++P++ + +++la+
  CCE30489.1 16 IRGQQYDDAVELARSLVKRDPKSYQGLIFLAF 47
                57789*******************99999996 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00047
      TPR_14  7 laeallalGdpdeAiallrralalaPddaeawlllaq 43
                la al++  ++deA+  +++a +l P+d +a   l +
  CCE30489.1 45 LAFALENKNQLDEAESFYKKASELRPKDSQAFQGLIK 81
                7889************************999887766 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 8.9
      TPR_14  22 allrralalaPddae 36 
                 +llr++++ +Pd++ 
  CCE30489.1 293 NLLRDYCKFFPDSDM 307
                 79**********875 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.081
      TPR_14   4 llalaeallalGd.pdeAiallrralalaPddaeawl 39 
                 +la   +++++ + ++eA  l++r+l+++ ++ +a++
  CCE30489.1 428 YLATSLVYFQSPRyHQEAKSLFDRVLEQDATSTAALI 464
                 66777889999873579************99988875 PP

  == domain 5  score: 12.4 bits;  conditional E-value: 0.00027
      TPR_14   9 eallalGdpdeAiallrralalaPddaeawll 40 
                  ++++ +++d+Ai+ l+ral+++ ++++++ +
  CCE30489.1 468 LIFEEEEEYDQAIDFLERALKRDGSNLRVRSE 499
                 5688999*******************999855 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.089
      TPR_14  15 GdpdeAiallrralalaPddaeawlllaq 43 
                  d ++A++++ +al+l  ++ +a  +la+
  CCE30489.1 595 KDRKRARRCFTKALELSAAEVVAAERLAR 623
                 57789**********************98 PP

  == domain 7  score: 11.8 bits;  conditional E-value: 0.00043
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 +a++ a+l+++++++Ai  +++al+l P+d   w  l+
  CCE30489.1 663 AAMGVAELNNQEFRKAIVSFQAALRLSPNDYHSWVGLG 700
                 789999***********************987777776 PP

  == domain 8  score: 15.5 bits;  conditional E-value: 2.7e-05
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++++ + ++lG++de+ia +++++a++P+++ + ++l q
  CCE30489.1 739 YMMGNIKRELGEYDESIASYQDVIATQPGEQGVIIALLQ 777
                 89999*************************999988876 PP

  == domain 9  score: 1.8 bits;  conditional E-value: 0.69
      TPR_14  17 pdeAiallrralalaPddaeawlllaq 43 
                 ++++i +++ra++l  ++a++w +l+ 
  CCE30489.1 942 WKASIWAFKRAIELESGNADFWNALGV 968
                 5778999***************99985 PP

  == domain 10  score: 6.4 bits;  conditional E-value: 0.023
      TPR_14    8 aeallalGdpdeAiallrralalaPddaeawl 39  
                  + + l +Gd+ +A +++ r  +++P+ a awl
  CCE30489.1 1000 GVLALLSGDFPQAKEAFTRGQSADPEYAHAWL 1031
                  5566779***********************97 PP

  == domain 11  score: 1.0 bits;  conditional E-value: 1.3
      TPR_14    8 aeallalGdpdeAiallrralal 30  
                  a ++++ ++ + A ++l+r++++
  CCE30489.1 1113 AMFEERMRNSASATKMLERLCSA 1135
                  6688999************9886 PP

  == domain 12  score: 5.3 bits;  conditional E-value: 0.054
      TPR_14    5 lalaeallalGdpdeAiallrralala 31  
                   +la+a+la  ++++A++  + al+l 
  CCE30489.1 1157 TDLARAYLATANYEQAVKEGETALKLS 1183
                  58****************999998876 PP

  == domain 13  score: 7.8 bits;  conditional E-value: 0.0081
      TPR_14    3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43  
                  a+l l+   + lG+++eA+++++ al    +++++  llaq
  CCE30489.1 1203 AHLTLGLGKYFLGKYEEAETCFESALGESGNSPDTTCLLAQ 1243
                  667777777889************************99998 PP

  == domain 14  score: 4.1 bits;  conditional E-value: 0.13
      TPR_14    6 alaeallalGd...pdeAiallrralalaPddaeawlll 41  
                  +la++l+a+G     d+A+++l  +++ +Pd+ +  lll
  CCE30489.1 1240 LLAQVLWAQGSedsRDRAREALFGVIESQPDHVQSVLLL 1278
                  69*******96455788***9999999999987766666 PP

  == domain 15  score: -1.1 bits;  conditional E-value: 6
      TPR_14    6 alaeallalGdpdeAiallrra 27  
                  +la+a++  G+ ++A +    a
  CCE30489.1 1386 DLAKAYAGTGKAADAQR----A 1403
                  68888888888887765....3 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.071        58       6      33 ..      32      59 ..      27      60 .. 0.87
   2 ?    6.7   0.0     0.013        11       1      27 [.      61      87 ..      61      98 .. 0.84
   3 ?   -0.1   0.0         2   1.6e+03       1      33 [.     448     480 ..     448     481 .. 0.90
   4 ?    3.6   0.0      0.12     1e+02       2      33 ..     483     514 ..     482     515 .. 0.95
   5 ?    3.3   0.1      0.16   1.3e+02       3      24 ..     570     591 ..     568     602 .. 0.77
   6 ?    2.0   0.0      0.41   3.3e+02       1      31 [.     603     633 ..     603     635 .. 0.93
   7 !   10.8   0.0   0.00064      0.52       2      32 ..     682     712 ..     681     714 .. 0.91
   8 ?    0.5   0.0       1.2   9.8e+02      13      24 ..     913     924 ..     911     944 .. 0.76
   9 !   11.9   0.0   0.00029      0.23       2      22 ..     949     969 ..     948     974 .. 0.91
  10 ?    6.3   0.0     0.017        14       4      34 .]     984    1014 ..     981    1014 .. 0.88
  11 ?    2.8   0.0      0.24   1.9e+02       2      33 ..    1016    1047 ..    1015    1048 .. 0.89
  12 ?   -1.0   0.1       3.8   3.1e+03      17      33 ..    1157    1173 ..    1149    1174 .. 0.86
  13 ?   -1.7   0.0       6.4   5.2e+03       6      24 ..    1265    1283 ..    1264    1292 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.071
      TPR_17  6 leldPnnadaynnLAelllknGdlmtAr 33
                +++dP++   +  LA +l+++++l++A+
  CCE30489.1 32 VKRDPKSYQGLIFLAFALENKNQLDEAE 59
                6788999999999**************8 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.013
      TPR_17  1 lylkaleldPnnadaynnLAelllknG 27
                +y+ka el P+++ a++ L +l+ k+G
  CCE30489.1 61 FYKKASELRPKDSQAFQGLIKLYTKQG 87
                6**********************9766 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 2
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 l+ ++le+d ++  a+   + ++++  ++++A+
  CCE30489.1 448 LFDRVLEQDATSTAALIGVGLIFEEEEEYDQAI 480
                 689*********999999999999999999986 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.12
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 +++al++d +n  +  + A++ + +Gd++tA+
  CCE30489.1 483 LERALKRDGSNLRVRSEAAWVKALKGDWQTAK 514
                 69****************************97 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.16
      TPR_17   3 lkaleldPnnadaynnLAelll 24 
                 l+a+ ++ n+a+ y++L+ +++
  CCE30489.1 570 LNAVTNNINHAPTYTYLGIFFY 591
                 78999999**********9865 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.41
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmt 31 
                 +++kalel    ++a   LA+ +++ Gd+++
  CCE30489.1 603 CFTKALELSAAEVVAAERLARSYAEGGDWER 633
                 799*********************9999876 PP

  == domain 7  score: 10.8 bits;  conditional E-value: 0.00064
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 ++ al+l Pn+  ++  L+e +++ G++  A
  CCE30489.1 682 FQAALRLSPNDYHSWVGLGESYHSSGRFIAA 712
                 799*********************9997655 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 1.2
      TPR_17  13 adaynnLAelll 24 
                 a+a++nL+++ +
  CCE30489.1 913 AVAHYNLGWAEH 924
                 789******987 PP

  == domain 9  score: 11.9 bits;  conditional E-value: 0.00029
      TPR_17   2 ylkaleldPnnadaynnLAel 22 
                 +++a+el+  nad++n L+++
  CCE30489.1 949 FKRAIELESGNADFWNALGVI 969
                 89*****************87 PP

  == domain 10  score: 6.3 bits;  conditional E-value: 0.017
      TPR_17    4 kaleldPnnadaynnLAelllknGdlmtArq 34  
                  ++l ++  +++ ++nL++l l  Gd+ +A++
  CCE30489.1  984 RSLHINERSPVGWTNLGVLALLSGDFPQAKE 1014
                  677888899999**************99985 PP

  == domain 11  score: 2.8 bits;  conditional E-value: 0.24
      TPR_17    2 ylkaleldPnnadaynnLAelllknGdlmtAr 33  
                  +++    dP +a a+   + + l  G+ ++Ar
  CCE30489.1 1016 FTRGQSADPEYAHAWLGQGLVALLSGNIKEAR 1047
                  5667788********************99997 PP

  == domain 12  score: -1.0 bits;  conditional E-value: 3.8
      TPR_17   17 nnLAelllknGdlmtAr 33  
                  + LA+++l   ++++A+
  CCE30489.1 1157 TDLARAYLATANYEQAV 1173
                  679*****999999997 PP

  == domain 13  score: -1.7 bits;  conditional E-value: 6.4
      TPR_17    6 leldPnnadaynnLAelll 24  
                  +e  P+++ +  +L+++ l
  CCE30489.1 1265 IESQPDHVQSVLLLGVVAL 1283
                  8999**********99754 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0072       5.9      48      75 ..      42      69 ..      18      71 .. 0.58
   2 ?   -1.8   0.0         5   4.1e+03      47      72 ..     379     404 ..     372     410 .. 0.66
   3 !   17.6   0.3   4.4e-06    0.0036      24      74 ..     440     489 ..     424     491 .. 0.87
   4 !    6.9   0.0    0.0094       7.6      13      65 ..     504     557 ..     496     559 .. 0.89
   5 ?    3.0   0.0      0.15   1.2e+02      40      74 ..     575     610 ..     569     613 .. 0.80
   6 ?    2.3   0.1      0.25   2.1e+02      17      33 ..     595     611 ..     579     643 .. 0.59
   7 ?    1.7   0.0       0.4   3.3e+02       9      64 ..     665     712 ..     661     716 .. 0.81
   8 !    9.6   0.0    0.0014       1.1       6      73 ..     696     763 ..     691     766 .. 0.74
   9 !    8.3   0.0    0.0034       2.8       8      33 ..     740     765 ..     732     777 .. 0.81
  10 ?   -2.2   0.1       6.4   5.2e+03      43      57 ..     911     925 ..     903     927 .. 0.79
  11 ?    3.3   0.0      0.13     1e+02      50      70 ..     998    1018 ..     996    1025 .. 0.88
  12 !    8.0   0.0    0.0042       3.4       3      35 ..    1027    1059 ..    1025    1065 .. 0.74
  13 !    7.4   0.2    0.0066       5.4      47      74 ..    1155    1182 ..    1153    1185 .. 0.87
  14 !   12.5   0.1   0.00017      0.14       5      71 ..    1203    1260 ..    1198    1261 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0072
      TPR_12 48 lrnLgrlyralgryeeAlelleealaia 75
                l+ L+ +++  ++++eA++++++a +++
  CCE30489.1 42 LIFLAFALENKNQLDEAESFYKKASELR 69
                4555555555556666666666666555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5
      TPR_12  47 tlrnLgrlyralgryeeAlelleeal 72 
                 ++r  g +++  g+ye  ++l ++a 
  CCE30489.1 379 SYRLAGAYFLHVGEYENVVDLMRKAR 404
                 56666666666677776666666665 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 4.4e-06
      TPR_12  24 ellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 +++++a  ++ r+l+ d     ++l++ g ++++ ++y++A+++le+al++
  CCE30489.1 440 RYHQEAKSLFDRVLEQDATS-TAALIGVGLIFEEEEEYDQAIDFLERALKR 489
                 68999999999998766655.589*************************86 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0094
      TPR_12  13 lrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralgryeeAl 65 
                  +  g+++ A + l ++l +  ++    d++l+a t++ +g +++ l+  ++A+
  CCE30489.1 504 KALKGDWQTAKDELSECLPLLqQKKIHSDKELLADTQYRMGCCLWNLNSSRQAR 557
                 5678*****************77779999****************999999987 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.15
      TPR_12  40 dhpltattlrnLgrl.yralgryeeAlelleealai 74 
                 ++ + a t+  Lg+  y++ ++ + A++ +++al++
  CCE30489.1 575 NNINHAPTYTYLGIFfYDYVKDRKRARRCFTKALEL 610
                 667778889999999456889999999999999997 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.25
      TPR_12  17 grydeAlellekaleia 33 
                 ++   A++++ kale+ 
  CCE30489.1 595 KDRKRARRCFTKALELS 611
                 44455666666666666 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.4
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeA 64 
                 ++++++  +++ +A+  +++al++    ++++h     +  +Lg+ y+ +gr+ +A
  CCE30489.1 665 MGVAELNNQEFRKAIVSFQAALRLS---PNDYH-----SWVGLGESYHSSGRFIAA 712
                 6788888889999999999999999...77777.....777888888888888766 PP

  == domain 8  score: 9.6 bits;  conditional E-value: 0.0014
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdh.pltattlrnLgrlyralgryeeAlelleeala 73 
                 ++ l++ ++  gr+  A +    a ++ +++ G d  ++t  t + +g + r+lg+y+e ++ +++++a
  CCE30489.1 696 WVGLGESYHSSGRFIAATKAILNAQRLENQA-GADVpADTWFTKYMMGNIKRELGEYDESIASYQDVIA 763
                 6678888888888888888888887777666.6666567777778888888888888888888887765 PP

  == domain 9  score: 8.3 bits;  conditional E-value: 0.0034
      TPR_12   8 nlaavlrrlgrydeAlellekaleia 33 
                  ++++ r+lg+yde+++ ++ +++ +
  CCE30489.1 740 MMGNIKRELGEYDESIASYQDVIATQ 765
                 589999***********999988766 PP

  == domain 10  score: -2.2 bits;  conditional E-value: 6.4
      TPR_12  43 ltattlrnLgrlyra 57 
                 + a + +nLg++ ++
  CCE30489.1 911 ARAVAHYNLGWAEHR 925
                 689999999999765 PP

  == domain 11  score: 3.3 bits;  conditional E-value: 0.13
      TPR_12   50 nLgrlyralgryeeAlellee 70  
                  nLg l +++g++ +A e++++
  CCE30489.1  998 NLGVLALLSGDFPQAKEAFTR 1018
                  99**************99987 PP

  == domain 12  score: 8.0 bits;  conditional E-value: 0.0042
      TPR_12    3 atalnnlaavlrrlgrydeAlellekaleiarr 35  
                  a a+   ++v +  g+  eA+ l+ +a+ei ++
  CCE30489.1 1027 AHAWLGQGLVALLSGNIKEARVLFTHAMEISES 1059
                  566767788888888888888888888888765 PP

  == domain 13  score: 7.4 bits;  conditional E-value: 0.0066
      TPR_12   47 tlrnLgrlyralgryeeAlelleealai 74  
                  t+ +L+r+y+a+ +ye+A++  e al++
  CCE30489.1 1155 TRTDLARAYLATANYEQAVKEGETALKL 1182
                  6679999999999999999999999986 PP

  == domain 14  score: 12.5 bits;  conditional E-value: 0.00017
      TPR_12    5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71  
                  a+  l++  + lg+y+eA++++e al        +++p+   t + L+++++a+   e+ +++ +ea
  CCE30489.1 1203 AHLTLGLGKYFLGKYEEAETCFESALGES-----GNSPD---TTCLLAQVLWAQ-GSEDSRDRAREA 1260
                  44479999999************996555.....44444...577777777777.555555555555 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1     0.003       2.5       7      42 .]      52      87 ..      51      87 .. 0.91
   2 ?    3.2   0.0     0.085        69       1      26 [.     467     492 ..     467     501 .. 0.82
   3 !   14.9   0.0   1.9e-05     0.016       8      42 .]     673     707 ..     666     707 .. 0.91
   4 !   14.6   0.0   2.5e-05      0.02       1      22 [.     742     763 ..     742     766 .. 0.90
   5 ?   -1.7   0.1         3   2.4e+03      30      35 ..     915     920 ..     912     924 .. 0.83
   6 !   10.9   0.0   0.00035      0.29      11      37 ..     943     969 ..     938     972 .. 0.89
   7 ?   -2.0   0.0       3.6   2.9e+03       8      37 ..    1007    1036 ..    1006    1041 .. 0.72
   8 ?    3.2   0.3     0.087        71       2      27 ..    1161    1186 ..    1160    1189 .. 0.86
   9 !    8.9   0.0    0.0015       1.2       7      42 .]    1214    1249 ..    1211    1249 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.003
      TPR_11  7 qGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42
                +++++eA   YkkA +l+P++  a+ +L ++y kqG
  CCE30489.1 52 KNQLDEAESFYKKASELRPKDSQAFQGLIKLYTKQG 87
                7899999999***********999999988888887 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.085
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPd 26 
                 G ++ e  +y++Ai  +++Alk d +
  CCE30489.1 467 GLIFEEEEEYDQAIDFLERALKRDGS 492
                 56677889*************97655 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 1.9e-05
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 +++ +Ai ++++Al+l+P++   + +LG+ y+  G
  CCE30489.1 673 QEFRKAIVSFQAALRLSPNDYHSWVGLGESYHSSG 707
                 67889**************************9876 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 2.5e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G++ +e+G+y+e+i++Y+  ++
  CCE30489.1 742 GNIKRELGEYDESIASYQDVIA 763
                 9*****************9887 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 3
      TPR_11  30 ayynLG 35 
                 a+ynLG
  CCE30489.1 915 AHYNLG 920
                 899999 PP

  == domain 6  score: 10.9 bits;  conditional E-value: 0.00035
      TPR_11  11 eeAieaYkkAlkldPdnaeayynLGla 37 
                 +++i a+k+A++l + na+++++LG++
  CCE30489.1 943 KASIWAFKRAIELESGNADFWNALGVI 969
                 6778899******************86 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 3.6
      TPR_11    8 GkyeeAieaYkkAlkldPdnaeayynLGla 37  
                  G++++A ea+ +    dP++a a+++ Gl+
  CCE30489.1 1007 GDFPQAKEAFTRGQSADPEYAHAWLGQGLV 1036
                  666666666666666799999999887776 PP

  == domain 8  score: 3.2 bits;  conditional E-value: 0.087
      TPR_11    2 dayyeqGkyeeAieaYkkAlkldPdn 27  
                  +ay +  +ye+A+++ ++Alkl++d 
  CCE30489.1 1161 RAYLATANYEQAVKEGETALKLSSDA 1186
                  57777889**************9985 PP

  == domain 9  score: 8.9 bits;  conditional E-value: 0.0015
      TPR_11    7 qGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42  
                  +GkyeeA ++++ Al  + ++++  + L++++++qG
  CCE30489.1 1214 LGKYEEAETCFESALGESGNSPDTTCLLAQVLWAQG 1249
                  7**********************************9 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.024        20       8      31 ..      48      71 ..      42      93 .. 0.83
   2 ?    0.1   0.0       1.3   1.1e+03       4      24 ..     381     402 ..     380     408 .. 0.84
   3 !   13.1   0.1   9.2e-05     0.075       6      33 ..     467     492 ..     462     495 .. 0.85
   4 ?    4.6   0.1     0.047        38       2      28 ..     583     610 ..     582     614 .. 0.80
   5 ?    1.4   0.0      0.49     4e+02       4      19 ..     620     635 ..     617     646 .. 0.83
   6 ?    2.3   0.0      0.26   2.1e+02      10      34 ..     670     692 ..     662     694 .. 0.78
   7 !    8.7   0.0    0.0023       1.9       5      33 ..     741     767 ..     739     770 .. 0.84
   8 ?   -2.5   0.0       8.6     7e+03      15      29 ..     942     956 ..     941     960 .. 0.75
   9 ?    2.8   0.0      0.18   1.5e+02       3      24 ..     997    1018 ..     996    1025 .. 0.86
  10 ?    5.1   0.1     0.033        26       5      21 ..    1159    1175 ..    1157    1189 .. 0.80
  11 !    8.2   0.0    0.0034       2.8      12      28 ..    1214    1231 ..    1211    1237 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.024
       TPR_7  8 lysrlGdyeeAielyeqsLaltkd 31
                + ++ ++ +eA+++y+++ +l+  
  CCE30489.1 48 ALENKNQLDEAESFYKKASELRPK 71
                67889999*********6666544 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.3
       TPR_7   4 nLarlysr.lGdyeeAielyeq 24 
                 +La +y+  +G+ye+ ++l ++
  CCE30489.1 381 RLAGAYFLhVGEYENVVDLMRK 402
                 688887777*******999877 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 9.2e-05
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkdpe 33 
                 + +++++ +y++Ai+++e+  al +d +
  CCE30489.1 467 GLIFEEEEEYDQAIDFLER--ALKRDGS 492
                 7899***************..9998865 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.047
       TPR_7   2 LlnLarl.ysrlGdyeeAielyeqsLal 28 
                 + +L+   y  + d+++A ++++++L+l
  CCE30489.1 583 YTYLGIFfYDYVKDRKRARRCFTKALEL 610
                 6778888566699***********8877 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.49
       TPR_7   4 nLarlysrlGdyeeAi 19 
                 +Lar y + Gd+e+ +
  CCE30489.1 620 RLARSYAEGGDWERVE 635
                 69***********976 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.26
       TPR_7  10 srlGdyeeAielyeqsLaltkdped 34 
                  + +++++Ai  +++  al+ +p+d
  CCE30489.1 670 LNNQEFRKAIVSFQA--ALRLSPND 692
                 56789**********..88887775 PP

  == domain 7  score: 8.7 bits;  conditional E-value: 0.0023
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltkdpe 33 
                 ++++ ++lG+y+e i  y+   +++ +p+
  CCE30489.1 741 MGNIKRELGEYDESIASYQD--VIATQPG 767
                 89****************99..7666665 PP

  == domain 8  score: -2.5 bits;  conditional E-value: 8.6
       TPR_7  15 yeeAielyeqsLalt 29 
                 ++  i+ ++++++l+
  CCE30489.1 942 WKASIWAFKRAIELE 956
                 889999999966665 PP

  == domain 9  score: 2.8 bits;  conditional E-value: 0.18
       TPR_7    3 lnLarlysrlGdyeeAielyeq 24  
                   nL++l    Gd+ +A e +++
  CCE30489.1  997 TNLGVLALLSGDFPQAKEAFTR 1018
                  69****************9999 PP

  == domain 10  score: 5.1 bits;  conditional E-value: 0.033
       TPR_7    5 LarlysrlGdyeeAiel 21  
                  Lar+y +  +ye+A++ 
  CCE30489.1 1159 LARAYLATANYEQAVKE 1175
                  9*************975 PP

  == domain 11  score: 8.2 bits;  conditional E-value: 0.0034
       TPR_7   12 lGdyeeAielyeqsL.al 28  
                  lG+yeeA++++e +L + 
  CCE30489.1 1214 LGKYEEAETCFESALgES 1231
                  79***********77554 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0018       1.5      12      33 .]      17      38 ..       9      38 .. 0.91
   2 ?   -0.1   0.0       2.3   1.9e+03       6      32 ..      45      71 ..      41      72 .. 0.85
   3 ?   -0.1   0.0       2.4   1.9e+03      17      30 ..     443     456 ..     426     459 .. 0.77
   4 !    7.7   0.0    0.0077       6.2       2      29 ..     462     489 ..     461     492 .. 0.87
   5 ?   -1.3   0.0       5.6   4.6e+03       7      25 ..     501     519 ..     499     521 .. 0.75
   6 ?    1.0   0.0         1   8.5e+02       2      21 ..     539     558 ..     538     559 .. 0.86
   7 ?    3.0   0.0      0.24     2e+02       5      18 ..     620     633 ..     617     643 .. 0.90
   8 ?    2.2   0.0      0.44   3.6e+02       6      32 ..     665     691 ..     664     692 .. 0.87
   9 !   11.4   0.0    0.0005       0.4       4      31 ..     739     766 ..     738     768 .. 0.94
  10 ?    0.5   0.0       1.5   1.2e+03       6      25 ..     999    1018 ..     998    1018 .. 0.76
  11 ?    1.8   0.2      0.58   4.7e+02       6      21 ..    1159    1174 ..    1158    1179 .. 0.89
  12 ?    1.3   0.0      0.83   6.8e+02       5      28 ..    1206    1229 ..    1202    1234 .. 0.76
  13 ?    1.1   0.0      0.95   7.7e+02      15      33 .]    1253    1271 ..    1240    1271 .. 0.75
  14 ?   -2.1   0.0        10   8.1e+03      12      27 ..    1357    1373 ..    1351    1374 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0018
                HHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6 12 klgdtdkAlealerlikeYPdS 33
                +++++d+A+e+ ++l+k+ P+S
  CCE30489.1 17 RGQQYDDAVELARSLVKRDPKS 38
                556*****************98 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 2.3
                HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  6 lalsyrklgdtdkAlealerlikeYPd 32
                la ++++ ++ d+A   +++  +  P+
  CCE30489.1 45 LAFALENKNQLDEAESFYKKASELRPK 71
                678888878*********999888775 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHH- CS
       TPR_6  17 dkAlealerlikeY 30 
                 ++A+ +++r++++ 
  CCE30489.1 443 QEAKSLFDRVLEQD 456
                 59********9986 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0077
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlike 29 
                 Al   +l +++  ++d+A++ ler +k+
  CCE30489.1 462 ALIGVGLIFEEEEEYDQAIDFLERALKR 489
                 677789999*966************997 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 5.6
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealer 25 
                 a+     gd+++A++ l +
  CCE30489.1 501 AWVKALKGDWQTAKDELSE 519
                 66667768******98765 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAle 21 
                  +y+++ ++ +l+ +++A++
  CCE30489.1 539 TQYRMGCCLWNLNSSRQARK 558
                 58*********988889986 PP

  == domain 7  score: 3.0 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdk 18 
                 +la+sy ++gd+++
  CCE30489.1 620 RLARSYAEGGDWER 633
                 89******99**96 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.44
                 HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYPd 32 
                 ++ + ++ ++ +kA+  ++  ++  P+
  CCE30489.1 665 MGVAELNNQEFRKAIVSFQAALRLSPN 691
                 688888855*************99998 PP

  == domain 9  score: 11.4 bits;  conditional E-value: 0.0005
                 HHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   4 yklalsyrklgdtdkAlealerlikeYP 31 
                 y+++   r+lg++d++++ ++++i   P
  CCE30489.1 739 YMMGNIKRELGEYDESIASYQDVIATQP 766
                 99*******9**************9998 PP

  == domain 10  score: 0.5 bits;  conditional E-value: 1.5
                  HHHHHHHHHHHHHHHHHHHH CS
       TPR_6    6 lalsyrklgdtdkAlealer 25  
                  l+ + +  gd  +A+ea+ r
  CCE30489.1  999 LGVLALLSGDFPQAKEAFTR 1018
                  666666656********986 PP

  == domain 11  score: 1.8 bits;  conditional E-value: 0.58
                  HHHHHHHHHHHHHHHH CS
       TPR_6    6 lalsyrklgdtdkAle 21  
                  la++y+++ ++++A++
  CCE30489.1 1159 LARAYLATANYEQAVK 1174
                  89*****55*****86 PP

  == domain 12  score: 1.3 bits;  conditional E-value: 0.83
                  HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6    5 klalsyrklgdtdkAlealerlik 28  
                   l+l  + lg++++A + +e+ + 
  CCE30489.1 1206 TLGLGKYFLGKYEEAETCFESALG 1229
                  5666677788**********9875 PP

  == domain 13  score: 1.1 bits;  conditional E-value: 0.95
                  HHHHHHHHHHHHHHH-TT- CS
       TPR_6   15 dtdkAlealerlikeYPdS 33  
                    d+A+eal  +i++ Pd+
  CCE30489.1 1253 SRDRAREALFGVIESQPDH 1271
                  457**************96 PP

  == domain 14  score: -2.1 bits;  conditional E-value: 10
                  H.HHHHHHHHHHHHHHH CS
       TPR_6   12 k.lgdtdkAlealerli 27  
                  + +gd+ +A  al+  i
  CCE30489.1 1357 EaTGDSHAAQMALRVAI 1373
                  4368*********9887 PP

>> TPR_22  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   5.2e-10   4.2e-07      13      91 .]     155     230 ..     143     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 5.2e-10
      TPR_22  13 litpqealkkLlkilskkeqeevsklvsrerlklsandpdyqikinslaWevykdsevdelynqLvnivddDeeRrkle 91 
                 + +p ++ + + +i +++e++++ +l+ + r +l a+ +d q  +     e+y +s++++ y+qL+n +++D+ Rr++e
  CCE30489.1 155 FPHPAQTYETVAHIQAEHENKRINTLIGERRTRLGAKLSDVQAEVK---REIYTQSRLEHTYRQLINWTNNDDVRRDME 230
                 56778888899999*******************9999999998765...69*************************998 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.6   1.3e+03       5      65 ..      15      75 ..      10      77 .. 0.90
   2 ?   -2.1   0.0       5.4   4.4e+03      30      57 ..     426     453 ..     423     464 .. 0.69
   3 !    9.1   0.2    0.0018       1.4       5      56 ..     470     521 ..     467     538 .. 0.88
   4 !    6.9   0.0    0.0086         7       6      51 ..     670     715 ..     666     728 .. 0.89
   5 ?    3.8   0.0     0.076        62      20      61 ..     984    1025 ..     981    1031 .. 0.88
   6 ?    0.5   0.0      0.85   6.9e+02      25      60 ..    1023    1058 ..    1020    1064 .. 0.89
   7 ?    1.1   0.1      0.54   4.4e+02      32      67 ..    1156    1191 ..    1153    1206 .. 0.78
   8 ?    1.1   0.0      0.57   4.6e+02      33      71 ..    1205    1243 ..    1197    1244 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.6
       TPR_9  5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65
                air ++++ a + + +l+  +P++ + +   +++l+  ++l +A      + +l p++ +a
  CCE30489.1 15 AIRGQQYDDAVELARSLVKRDPKSYQGLIFLAFALENKNQLDEAESFYKKASELRPKDSQA 75
                689999*******************999999999999999999999888888888888776 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.4
       TPR_9  30 eerrdRGlllaqlGclsaAladLeayla 57 
                 ++++   l+++q+ +++++++ L   + 
  CCE30489.1 426 SLYLATSLVYFQSPRYHQEAKSLFDRVL 453
                 566677799********99999865443 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0018
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeayl 56 
                   +ee++++a+  +er l  +    + r + + + a  G++++A ++L  +l
  CCE30489.1 470 FEEEEEYDQAIDFLERALKRDGSNLRVRSEAAWVKALKGDWQTAKDELSECL 521
                 6789*********************************************998 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0086
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAlad 51 
                 ++++++ +a+   +  l l P+d + +   G  ++ +G++ aA ++
  CCE30489.1 670 LNNQEFRKAIVSFQAALRLSPNDYHSWVGLGESYHSSGRFIAATKA 715
                 6899999*********************************999876 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.076
       TPR_9   20 rllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61  
                  r l ++ ++p  +   G+l   +G++ +A +++ +  + +p+
  CCE30489.1  984 RSLHINERSPVGWTNLGVLALLSGDFPQAKEAFTRGQSADPE 1025
                  78999999************************9987777775 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.85
       TPR_9   25 aPddpeerrdRGlllaqlGclsaAladLeaylalap 60  
                  +P+ ++ ++  Gl+   +G++++A+  + +++++++
  CCE30489.1 1023 DPEYAHAWLGQGLVALLSGNIKEARVLFTHAMEISE 1058
                  79999********************99999998876 PP

  == domain 7  score: 1.1 bits;  conditional E-value: 0.54
       TPR_9   32 rrdRGlllaqlGclsaAladLeaylalapdapdaea 67  
                  r d ++++    ++++A+++ e++l l+ da +  +
  CCE30489.1 1156 RTDLARAYLATANYEQAVKEGETALKLSSDATESKL 1191
                  6799*********************88886655443 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.57
       TPR_9   33 rdRGlllaqlGclsaAladLeaylalapdapdaeairaq 71  
                  +  Gl  + lG +++A  ++e +l  +++ pd   + aq
  CCE30489.1 1205 LTLGLGKYFLGKYEEAETCFESALGESGNSPDTTCLLAQ 1243
                  567778888***************999999998776665 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00043      0.35       3      58 ..      19      75 ..      18      93 .. 0.91
   2 !    7.6   0.1    0.0053       4.3       5      54 ..     442     492 ..     415     519 .. 0.64
   3 ?    1.1   0.0       0.6   4.9e+02       2      78 ..     672     757 ..     671     761 .. 0.65
   4 ?    4.5   3.0      0.05        41      56      81 ..    1194    1226 ..    1119    1227 .. 0.64
   5 !    7.7   0.0    0.0049         4       4      63 ..    1216    1279 ..    1214    1288 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00043
                T-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHH CS
      ANAPC3  3 nnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgc 58
                ++y++A+ la  l++++++s++ + +lA +l + +q ++A  +++ka +l++k+ ++
  CCE30489.1 19 QQYDDAVELARSLVKRDPKSYQGLIFLAFALENKNQLDEAESFYKKAsELRPKDSQA 75
                69*********************************************9988887765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC CS
      ANAPC3   5 yknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnsk 54 
                 +++A  l++r+l++++ s  ++   +l + + ++y++A+++l++a k +++
  CCE30489.1 442 HQEAKSLFDRVLEQDATSTAALIGVGLIFEEEEEYDQAIDFLERAlKRDGS 492
                 455555555555555555555555566666666666666666666555555 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.6
                 TT-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-H.........HHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3   2 qnnyknAiflaerllaaetespedayllAlclylngqykrAyellrkaklnsksl.........gcrylfAqcllkLkkyeeAiaa 78 
                 ++ +++Ai  +  +l  +++++ +   l++++ ++g++  A + + +a+  ++              y ++    +L++y+e ia 
  CCE30489.1 672 NQEFRKAIVSFQAALRLSPNDYHSWVGLGESYHSSGRFIAATKAILNAQRLENQAgadvpadtwFTKYMMGNIKRELGEYDESIAS 757
                 56677777777777766677777777789999999998888888888733333333444554555566666666677777776665 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.05
                  H.......HHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   56 l.......gcrylfAqcllkLkkyeeAiaaLek 81  
                           ++++++   + L+kyeeA++++e+
  CCE30489.1 1194 DqrkrariSAHLTLGLGKYFLGKYEEAETCFES 1226
                  1444444488899999999**********9986 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0049
                  -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-...HHHHHHHHHCT.SHHHC-HHHHHHHH CS
      ANAPC3    4 nyknAiflaerllaaetespedayllAlclylngq...ykrAyellrka.klnskslgcrylfA 63  
                  +y++A+ ++e +l  + +sp+ + llA++l  +g     +rA e l    ++++ + ++ +l++
  CCE30489.1 1216 KYEEAETCFESALGESGNSPDTTCLLAQVLWAQGSedsRDRAREALFGViESQPDHVQSVLLLG 1279
                  7999999999999888999999999999999998755566666666666666666666666665 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.18   1.5e+02      64      92 ..     499     527 ..     468     540 .. 0.86
   2 ?   -2.4   0.2       6.6   5.4e+03      75      95 ..     597     617 ..     595     637 .. 0.61
   3 ?   -0.2   0.0       1.3   1.1e+03      72      91 ..     706     725 ..     700     731 .. 0.87
   4 ?    5.9   0.0     0.018        15      63      91 ..     997    1025 ..     989    1032 .. 0.84
   5 ?    5.9   0.0     0.018        14      59      91 ..    1027    1059 ..    1024    1067 .. 0.83
   6 !    8.8   0.0    0.0022       1.8      52      99 ..    1194    1242 ..    1178    1249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.18
      HemY_N  64 seGlialaeGdfarAekaaakaaklseap 92 
                 + ++++ ++Gd+++A+ ++++ + l++++
  CCE30489.1 499 EAAWVKALKGDWQTAKDELSECLPLLQQK 527
                 67999************999988777664 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.6
      HemY_N  75 farAekaaakaaklseaplla 95 
                  +rA++ ++ka++ls+a+++a
  CCE30489.1 597 RKRARRCFTKALELSAAEVVA 617
                 456666666666666664443 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.3
      HemY_N  72 eGdfarAekaaakaaklsea 91 
                 +G+f +A ka+ +a++l+++
  CCE30489.1 706 SGRFIAATKAILNAQRLENQ 725
                 7**************99977 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.018
      HemY_N   63 lseGlialaeGdfarAekaaakaaklsea 91  
                  ++ G++al++Gdf +A++a+++ ++ +++
  CCE30489.1  997 TNLGVLALLSGDFPQAKEAFTRGQSADPE 1025
                  5679*****************99987755 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.018
      HemY_N   59 arealseGlialaeGdfarAekaaakaaklsea 91  
                  a++ l +Gl+al++G+ ++A+ +++ a + se+
  CCE30489.1 1027 AHAWLGQGLVALLSGNIKEARVLFTHAMEISES 1059
                  567789***************998888776665 PP

  == domain 6  score: 8.8 bits;  conditional E-value: 0.0022
      HemY_N   52 rrrrerkarealseGlialaeGdfarAekaaakaaklsea.pllaylla 99  
                  ++r++ +  ++l+ Gl +++ G +++Ae  + +a+  s + p  + lla
  CCE30489.1 1194 DQRKRARISAHLTLGLGKYFLGKYEEAETCFESALGESGNsPDTTCLLA 1242
                  689******************************9999977665555554 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       3.9   3.2e+03       3      22 ..      41      60 ..      40      62 .. 0.86
   2 ?   -1.7   0.0       8.6     7e+03       2      22 ..     495     515 ..     494     518 .. 0.84
   3 ?    1.7   0.1      0.67   5.4e+02       3      19 ..     617     633 ..     615     635 .. 0.83
   4 ?   -1.1   0.0       5.6   4.5e+03       4      20 ..     696     712 ..     694     713 .. 0.86
   5 ?    0.6   0.5       1.5   1.3e+03       1      13 [.     913     925 ..     913     926 .. 0.87
   6 ?    6.3   0.0     0.023        19       3      22 ..     995    1014 ..     993    1016 .. 0.85
   7 ?    4.4   0.1     0.093        76       1      23 [.    1027    1049 ..    1027    1050 .. 0.91
   8 ?    1.2   0.3      0.97   7.9e+02       3      20 ..    1155    1172 ..    1154    1173 .. 0.82
   9 ?    3.2   0.0      0.23   1.9e+02       3      25 ..    1203    1225 ..    1201    1226 .. 0.89
  10 ?    4.2   0.0      0.11        90       3      15 ..    1237    1249 ..    1235    1252 .. 0.87
  11 ?    3.5   0.6      0.19   1.5e+02       6      23 ..    1386    1403 ..    1385    1404 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 3.9
       TPR_4  3 allaLArallalGdldeAra 22
                 l++LA al    +ldeA+ 
  CCE30489.1 41 GLIFLAFALENKNQLDEAES 60
                5899*****999999*9985 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 8.6
       TPR_4   2 rallaLArallalGdldeAra 22 
                 r+++  A++ ++ Gd+ +A +
  CCE30489.1 495 RVRSEAAWVKALKGDWQTAKD 515
                 7889999999999**999966 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.67
       TPR_4   3 allaLArallalGdlde 19 
                 a+  LAr +++ Gd+++
  CCE30489.1 617 AAERLARSYAEGGDWER 633
                 66779*********985 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 5.6
       TPR_4   4 llaLArallalGdldeA 20 
                  ++L++ ++  G++ +A
  CCE30489.1 696 WVGLGESYHSSGRFIAA 712
                 578**********9887 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 1.5
       TPR_4   1 arallaLAralla 13 
                 a+a+++L++a ++
  CCE30489.1 913 AVAHYNLGWAEHR 925
                 68********887 PP

  == domain 6  score: 6.3 bits;  conditional E-value: 0.023
       TPR_4    3 allaLArallalGdldeAra 22  
                     +L+ ++l+ Gd+++A +
  CCE30489.1  995 GWTNLGVLALLSGDFPQAKE 1014
                  6689**************76 PP

  == domain 7  score: 4.4 bits;  conditional E-value: 0.093
       TPR_4    1 arallaLArallalGdldeAral 23  
                  a+a l+++ ++l+ G+  eAr l
  CCE30489.1 1027 AHAWLGQGLVALLSGNIKEARVL 1049
                  68999***************976 PP

  == domain 8  score: 1.2 bits;  conditional E-value: 0.97
       TPR_4    3 allaLArallalGdldeA 20  
                  ++ +LAra+la+ ++++A
  CCE30489.1 1155 TRTDLARAYLATANYEQA 1172
                  5789******98777777 PP

  == domain 9  score: 3.2 bits;  conditional E-value: 0.23
       TPR_4    3 allaLArallalGdldeAralle 25  
                  a+l L+   + lG ++eA++ +e
  CCE30489.1 1203 AHLTLGLGKYFLGKYEEAETCFE 1225
                  8999999999*********9887 PP

  == domain 10  score: 4.2 bits;  conditional E-value: 0.11
       TPR_4    3 allaLArallalG 15  
                  ++ +LA++l+a+G
  CCE30489.1 1237 TTCLLAQVLWAQG 1249
                  5679********9 PP

  == domain 11  score: 3.5 bits;  conditional E-value: 0.19
       TPR_4    6 aLArallalGdldeAral 23  
                  +LA a++ +G +++A+++
  CCE30489.1 1386 DLAKAYAGTGKAADAQRA 1403
                  59*************996 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0087       7.1     103     155 ..      76     128 ..      72     139 .. 0.87
   2 !    7.4   0.2    0.0031       2.5     114     205 ..     452     538 ..     380     560 .. 0.81
   3 !   12.4   0.3   9.2e-05     0.075      12     120 ..     670     775 ..     663     808 .. 0.81
   4 ?   -2.3   0.1       2.6   2.1e+03      24      51 ..     898     924 ..     894     931 .. 0.79
   5 ?   -1.5   0.0       1.6   1.3e+03      48     102 ..    1035    1049 ..     997    1071 .. 0.39
   6 ?    5.3   0.5     0.014        11     221     290 ..    1132    1206 ..    1112    1221 .. 0.77
   7 ?    0.7   0.1      0.34   2.8e+02     161     224 ..    1235    1297 ..    1214    1323 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0087
    TPR_MalT 103 yeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleql 155
                 ++  ++l+t+qg ++l  +++++v+l +++ E  +Le+A++ +++ i++++  
  CCE30489.1  76 FQGLIKLYTKQGTKKLNDYQIAVVSLVEIFDEAEHLEKAKDVVDQFIDYVRVN 128
                 677799*************************************9999887765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0031
    TPR_MalT 114 glqqlplvgfllvlladllyEwndLeeAeqhlqeGielleqlepeaaldayvllarialaqGdleeAetllekaeelaresnfhvdwlanae 205
                  l+q  ++  +l++ + ++ E  + ++A ++l+++  l ++ +++ +++++++   +++ +Gd+++A++ l +   l++++++h d    a+
  CCE30489.1 452 VLEQDATSTAALIGVGLIFEEEEEYDQAIDFLERA--LKRD-GSNLRVRSEAA--WVKALKGDWQTAKDELSECLPLLQQKKIHSDKELLAD 538
                 455678888999999*******************9..4444.46677777775..58899************************99876655 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 9.2e-05
    TPR_MalT  12 iasgdaeralelArqALallpeddllariaatavlGeasllqGdleaAlqalqeaekl..arqadslhvallallqqaeilvaqGrLheAletyeqalq 108
                 ++ +++++a+   ++AL l+p+d + + +     lGe ++  G++ aA++a   a++l    +ad +  + ++ +  ++i ++ G+ +e++  y++ ++
  CCE30489.1 670 LNNQEFRKAIVSFQAALRLSPNDYHSWVG-----LGESYHSSGRFIAATKAILNAQRLenQAGADVPADTWFTKYMMGNIKRELGEYDESIASYQDVIA 763
                 67788888888889999999999988755.....79********************9944467788899****************************99 PP

    TPR_MalT 109 lateqglqqlpl 120
                   + +++  + l
  CCE30489.1 764 TQPGEQGVIIAL 775
                 666665555444 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.6
    TPR_MalT  24 ArqALallpeddllariaatavlGeasl 51 
                 ++qA++  +  d +ar++a+++lG a +
  CCE30489.1 898 CKQAVHV-SAGDIHARAVAHYNLGWAEH 924
                 6677655.5567799*********8877 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1.6
    TPR_MalT   48 easllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAlet 102 
                   ++ll G                                          +eA  +
  CCE30489.1 1035 LVALLSG----------------------------------------NIKEARVL 1049
                  2222222........................................22222222 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.014
    TPR_MalT  221 aerwleaaelpsdddnhflelel.rn.larvllalgrydeAle...llerLlkaaeelgrvrslieiliLqalal 290 
                  +  +le+   ++++ + f ++ l r+ lar++la ++y++A +   +  +L ++a+e ++ +++ +     a++ 
  CCE30489.1 1132 LCSALESHCGKTHSAETFAQFTLtRTdLARAYLATANYEQAVKegeTALKLSSDATESKLAGDQRKRARISAHLT 1206
                  444555555677888899999886556************998777799999999999999999988776666665 PP

  == domain 7  score: 0.7 bits;  conditional E-value: 0.34
    TPR_MalT  161 ldayvllarialaqGdleeAetllekaeelaresnfhvdwlanaeevrvrlwlaqgdlaaaerw 224 
                   d + lla++ +aqG  +  +++ e +  + ++++ hv+ +  +  v + l + +g l+a ++ 
  CCE30489.1 1235 PDTTCLLAQVLWAQGSEDSRDRAREALFGVIESQPDHVQSVLLLGVVAL-LDQDEGSLEAVVEE 1297
                  46678999*******9999999999999999999999888766555554.34555555554443 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       7.5   6.1e+03      17      26 ..      20      29 ..      19      35 .. 0.60
   2 ?    4.3   0.1     0.049        40       8      30 ..      45      67 ..      42      69 .. 0.89
   3 ?    0.8   0.1      0.61     5e+02      17      38 ..     475     489 ..     467     491 .. 0.59
   4 ?   -1.4   0.0       2.9   2.4e+03      12      32 ..     591     611 ..     582     616 .. 0.81
   5 ?   -2.7   0.0       7.7   6.3e+03       8      21 ..     699     712 ..     699     714 .. 0.89
   6 ?    5.6   0.0     0.018        15       8      31 ..     741     764 ..     737     765 .. 0.92
   7 ?   -0.6   0.0       1.7   1.4e+03      16      33 ..    1041    1058 ..    1035    1062 .. 0.90
   8 !    8.0   0.2    0.0032       2.6       4      31 ..    1155    1182 ..    1154    1185 .. 0.92
   9 ?    4.6   0.0     0.038        31       8      29 ..    1207    1228 ..    1205    1229 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7.5
      TPR_10 17 rydeAealle 26
                +yd+A++l++
  CCE30489.1 20 QYDDAVELAR 29
                5677777654 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.049
      TPR_10  8 LanalrqrgrydeAealleeala 30
                La al + +++deAe ++++a +
  CCE30489.1 45 LAFALENKNQLDEAESFYKKASE 67
                8999***************9965 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.61
      TPR_10  17 rydeAealleealairrrllGp 38 
                 +y       ++a++  +r+l +
  CCE30489.1 475 EY-------DQAIDFLERALKR 489
                 44.......5555555555544 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 2.9
      TPR_10  12 lrqrgrydeAealleealair 32 
                 +  ++++++A++ + +al++ 
  CCE30489.1 591 YDYVKDRKRARRCFTKALELS 611
                 4778999**********9975 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 7.7
      TPR_10   8 LanalrqrgrydeA 21 
                 L+  +++ gr+ +A
  CCE30489.1 699 LGESYHSSGRFIAA 712
                 8999*******998 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.018
      TPR_10   8 LanalrqrgrydeAealleealai 31 
                 ++n+ r++g+yde+ a +++++a+
  CCE30489.1 741 MGNIKRELGEYDESIASYQDVIAT 764
                 79999*****************98 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 1.7
      TPR_10   16 grydeAealleealairr 33  
                  g+ +eA+ l+ +a++i +
  CCE30489.1 1041 GNIKEARVLFTHAMEISE 1058
                  899************987 PP

  == domain 8  score: 8.0 bits;  conditional E-value: 0.0032
      TPR_10    4 slnNLanalrqrgrydeAealleealai 31  
                  ++++La+a+ ++ +y++A++  e al +
  CCE30489.1 1155 TRTDLARAYLATANYEQAVKEGETALKL 1182
                  6789*******************99975 PP

  == domain 9  score: 4.6 bits;  conditional E-value: 0.038
      TPR_10    8 LanalrqrgrydeAealleeal 29  
                  L+   + +g+y+eAe  +e al
  CCE30489.1 1207 LGLGKYFLGKYEEAETCFESAL 1228
                  77788899***********997 PP

>> DUF4919  Domain of unknown function (DUF4919)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.5e-05     0.012      64     120 ..      12      68 ..       4     133 .. 0.91
   2 ?   -1.6   0.0       2.7   2.2e+03      69      92 ..     472     495 ..     470     515 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-05
     DUF4919  64 dkkelseeelkeiislaeealkknPfdlkqlnllayaykalgkkeeakiyskrlnkl 120
                  ++ +  ++++++++la++++k++P + + l +la+a++++++ +ea++++k+  +l
  CCE30489.1  12 INDAIRGQQYDDAVELARSLVKRDPKSYQGLIFLAFALENKNQLDEAESFYKKASEL 68 
                 57788899******************************************9998765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.7
     DUF4919  69 seeelkeiislaeealkknPfdlk 92 
                 +eee++++i++ e+alk++  +l+
  CCE30489.1 472 EEEEYDQAIDFLERALKRDGSNLR 495
                 689**************9866665 PP

>> Cas_Csm6  CRISPR-associated protein (Cas_Csm6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4   1.1e-05    0.0087     124     255 ..      11     138 ..       5     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
    Cas_Csm6 124 qikklieaYdYeaAleiaaslkseenekvlkLlelakarknld.lsevnklarktaldllPvkesekkklfeYllalklklkreeladfvrritplvve 221
                  i   i   +Y+ A+e+a sl ++ ++ +  L+ la a+ n + l e++ ++ k+a +l P    ++ + f+ l +l  k+ +++l d+ +++ +lv+ 
  CCE30489.1  11 SINDAIRGQQYDDAVELARSLVKRDPKSYQGLIFLAFALENKNqLDEAESFY-KKASELRP----KDSQAFQGLIKLYTKQGTKKLNDYQIAVVSLVEI 104
                 5677788889*********************************555555555.56777999....67778999999*********************99 PP

    Cas_Csm6 222 lleailkekckidikdyCatkkknedkyekrdkk 255
                   ea   ek k  + ++ ++ + n +k +  d  
  CCE30489.1 105 FDEAEHLEKAKDVVDQFIDYVRVNGNKLQYADAL 138
                 9998777778878889999988888877555544 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.016        13     218     283 ..      23      88 ..      16     105 .. 0.85
   2 ?    2.0   0.0       0.1        85     162     231 ..     420     491 ..     362     507 .. 0.70
   3 ?   -0.6   0.0      0.61     5e+02     247     286 ..     594     633 ..     574     641 .. 0.88
   4 ?    2.8   0.0      0.06        49     253     287 ..     678     712 ..     664     731 .. 0.79
   5 ?   -3.7   0.0       5.5   4.5e+03      97     128 ..    1314    1346 ..    1308    1349 .. 0.77
   6 ?   -3.0   0.1       3.5   2.8e+03     257     275 ..    1400    1418 ..    1397    1420 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.016
                 HHHHHHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT- CS
       ChAPs 218 davkllneeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikled 283
                 dav+l  + ++ ++k+++ L+  a  l +k++ + A +  k+a ++ P +++ +  L k Y+k++ 
  CCE30489.1  23 DAVELARSLVKRDPKSYQGLIFLAFALENKNQLDEAESFYKKASELRPKDSQAFQGLIKLYTKQGT 88 
                 7999999999999***99999988777788888****************************98653 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.1
                 SS--SSSSHHHHHHHHHHHHHT-HHHHHHHHHHHHTT-GGGHHHHHHHHHHTT-HH...HHHHHHHHHH-SSS CS
       ChAPs 162 qvptlvnNyLvetllklvrltkrydralellekLkeeepevvillarvllladeEv...davkllneeleeee 231
                 ++ +  + yL  +l+ +++  + +++a +l++++ e++   ++ l+ v l+ +eE    +a++ l+++l+ + 
  CCE30489.1 420 NTDNACSLYLATSLV-YFQSPRYHQEAKSLFDRVLEQDATSTAALIGVGLIFEEEEeydQAIDFLERALKRDG 491
                 345667788887776.8899999**********9999977777777776665555312469999999997655 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.61
                 SS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHH CS
       ChAPs 247 kkkeelAlevakravksaPsefktWalLvkvYikledien 286
                  k+ + A ++ ++a +++  e     +L+++Y + +d+e 
  CCE30489.1 594 VKDRKRARRCFTKALELSAAEVVAAERLARSYAEGGDWER 633
                 45568899******************************97 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.06
                 HHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHH CS
       ChAPs 253 AlevakravksaPsefktWalLvkvYikledienA 287
                 A+   + a +++P++++ W+ L ++Y + + +  A
  CCE30489.1 678 AIVSFQAALRLSPNDYHSWVGLGESYHSSGRFIAA 712
                 555668899*****************988877655 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 5.5
                  HHHHHHHHHHHHHT.TTTTTS----TTEEE--G CS
       ChAPs   97 flsgvlRsllladd.nadddevqklvetrklnP 128 
                   +s+vlRs+    d  ++ d vq++ e+  l P
  CCE30489.1 1314 QISEVLRSIAGLADgHTERDMVQQVQEDVMLYP 1346
                  589******976661566788888888887777 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 3.5
                  HHHHHHH-TT-HHHHHHHH CS
       ChAPs  257 akravksaPsefktWalLv 275 
                  a+rav ++P + + W+ L 
  CCE30489.1 1400 AQRAVMLSPWDVSGWTALR 1418
                  89*************9985 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.024        20      11      33 ..      46      68 ..      41      68 .. 0.90
   2 ?    2.0   0.0      0.27   2.2e+02      27      42 ..     476     493 ..     474     501 .. 0.74
   3 ?    0.5   0.0      0.82   6.7e+02       9      32 ..     664     687 ..     661     688 .. 0.88
   4 ?   -1.9   0.0       4.5   3.7e+03      17      32 ..    1040    1055 ..    1032    1056 .. 0.88
   5 ?   -2.6   0.1       7.4   6.1e+03      25      44 ..    1167    1187 ..    1164    1197 .. 0.63
   6 ?   -1.8   0.1       4.3   3.5e+03      18      32 ..    1215    1229 ..    1214    1230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.024
         MIT 11 AveeDnagnyeeAlelYkealel 33
                A  ++n+++ +eA + Yk+a el
  CCE30489.1 46 AFALENKNQLDEAESFYKKASEL 68
                8899****************986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.27
         MIT  27 YkealelLlqalke..kn 42 
                 Y +a++ L  alk+  +n
  CCE30489.1 476 YDQAIDFLERALKRdgSN 493
                 999*****9999942444 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.82
         MIT   9 kkAveeDnagnyeeAlelYkeale 32 
                  + v e n++++ +A+  ++ al+
  CCE30489.1 664 AMGVAELNNQEFRKAIVSFQAALR 687
                 6789999**************997 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 4.5
         MIT   17 agnyeeAlelYkeale 32  
                  +gn++eA  l+++a+e
  CCE30489.1 1040 SGNIKEARVLFTHAME 1055
                  699**********987 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 7.4
         MIT   25 elYkealelLlqalk.eknee 44  
                   +Y++a++   +alk  ++++
  CCE30489.1 1167 ANYEQAVKEGETALKlSSDAT 1187
                  568888877777777444433 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 4.3
         MIT   18 gnyeeAlelYkeale 32  
                  g+yeeA  ++++al+
  CCE30489.1 1215 GKYEEAETCFESALG 1229
                  89****999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.98u 0.27s 00:00:01.25 Elapsed: 00:00:00.51
# Mc/sec: 8448.73
//
Query:       CCE30490.1  [L=248]
Description: uncharacterized protein CPUR_04338 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-55  186.0   0.0      9e-55  185.8   0.0    1.0  1  RMI1_N    RecQ mediated genome instability protein


Domain annotation for each model (and alignments):
>> RMI1_N  RecQ mediated genome instability protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.0     5e-59     9e-55       3     216 ..      13     232 ..      11     233 .. 0.88

  Alignments for each domain:
  == domain 1  score: 185.8 bits;  conditional E-value: 5e-59
      RMI1_N   3 srkhlpvspeWleacvesleeepnlplsallktvleqlLasDltes....tnsssvlpaniaeqrksesspa...lkgpvvvQvldiedigsSaysqle 94 
                 s++ +++sp+ l ++v++++  p +pl++l++t++++lLa+Dlt+s     ++ +++pa+i     ++   +   l+++++vQvldie+++sS+++q+e
  CCE30490.1  13 SQNLPYPSPSLLASLVSTRS--PPPPLPSLVATAKTRLLACDLTTSelvdPAQLPSFPAEILPPAGANA--QevpLRQNICVQVLDIENLASSRWEQIE 107
                 6667899***********99..88**********************99994466778888855554442..2468************************ PP

      RMI1_N  95 aleavergeetrgrevirte.saaaasakadeenseekeeaqatsseskkrrmlkLeLtDg.gqkvkAiElkpikglsl.klaiGvKllLkggvkvrrG 190
                 +lea+erge+trgr+vir++ ++ + +a   +++ + + +a a +  + k+++++L+++D  g++v+A+El +++gl++ +++iG+Kl+L++g+ v+rG
  CCE30490.1 108 ELEAIERGERTRGRQVIRVTgEEGEDDARGVASAASARPSAGAGAGIAGKNATHRLVVQDRsGNRVYAVELLRMPGLGIaTMSIGCKLVLRAGCIVARG 206
                 *******************65666666666666666667777777899*************************************************** PP

      RMI1_N 191 vlLLepenvkvlGGeveeldkawkee 216
                 ++LL+pe++ vlGG++e+++  w  +
  CCE30490.1 207 TVLLTPETCLVLGGKIESWHDVWVAG 232
                 **********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1812.45
//
Query:       CCE30491.1  [L=365]
Description: uncharacterized protein CPUR_04339 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-26   90.4   0.1    1.2e-25   89.4   0.0    1.6  2  Vps51     Vps51/Vps67
     0.0002   20.2   0.2    0.00027   19.7   0.2    1.1  1  Dor1      Dor1-like family
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.026   14.7   0.0    1.4  1  COG5      Golgi transport complex subunit 5


Domain annotation for each model (and alignments):
>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.0   1.9e-29   1.2e-25       1      86 [.     163     248 ..     163     249 .. 0.98
   2 ?   -3.3   0.0       1.7     1e+04      26      46 ..     279     299 ..     272     301 .. 0.68

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 1.9e-29
       Vps51   1 ldspdfdaeayvrellakstlkellkveasllseiraldselkalVydnYskLisasdtIrkmksemdkldqklselkqaiskiae 86 
                 ld+p+fda +yv+ ++++s+l+++l+++ +++ e rald+e+kalVydnYskLi+a++tIrk++ +md+l ++ s+l++ai +i++
  CCE30491.1 163 LDDPEFDAGDYVARVVENSGLEDVLRLYTQVVGELRALDAEKKALVYDNYSKLITATETIRKLRANMDPLNPMASTLDPAIAQIYS 248
                 699*******************************************************************************9986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.7
       Vps51  26 kveasllseiraldselkalV 46 
                 ++ + l +e+ a+ + l+ lV
  CCE30491.1 279 QRSRHLAAEALATPNRLRHLV 299
                 455567777777777777777 PP

>> Dor1  Dor1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   4.5e-08   0.00027       9     125 ..     183     307 ..     176     317 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.5e-08
        Dor1   9 leelekepelLaeeaeeilaqiqdLarknyktlidaaealeairqelediraqledLvlklpkLteectrfskkaeeisek.......rkenkllldkh 100
                 le   +  +++  e ++++a+ ++L  +ny  li+a+e ++++r  ++ ++    +L   + ++++++  +++k+ e++          + ++l  +++
  CCE30491.1 183 LEDVLRLYTQVVGELRALDAEKKALVYDNYSKLITATETIRKLRANMDPLNPMASTLDPAIAQIYSQASSIREKLRESVPPpdsdqgrARAAELRRQRS 281
                 5555555566677899*************************************************************9988888889555666666666 PP

        Dor1 101 eql.lellelPqlmdrcirngyydea 125
                  +l  e l +P+++   +r+g+ +ea
  CCE30491.1 282 RHLaAEALATPNRLRHLVREGKVQEA 307
                 666359**************999887 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.4e-06     0.026       5     103 ..     165     258 ..     161     262 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.4e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TTHHHHHHHH CS
        COG5   5 epdFdpksfanallkatnnnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslssvlselksslesLsasyerlkskvlepyeeae 103
                 +p+Fd+ ++  +++      ++  +d+     ++   ++ ld + + l+ +n+++L++ ++++++l++ +++l++  + L  ++ ++ s+ +   e+++
  CCE30491.1 165 DPEFDAGDYVARVVE-----NSGLEDVLRLYTQVVGELRALDAEKKALVYDNYSKLITATETIRKLRANMDPLNPMASTLDPAIAQIYSQASSIREKLR 258
                 789999999999999.....44555666666788999*************************************************9999887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2578.03
//
Query:       CCE30492.1  [L=300]
Description: related to Ngg1p-interacting factor 3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-62  211.6   0.0    1.7e-62  211.2   0.0    1.0  1  NIF3      NIF3 (NGG1p interacting factor 3)


Domain annotation for each model (and alignments):
>> NIF3  NIF3 (NGG1p interacting factor 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.2   0.0   9.5e-67   1.7e-62       2     243 ..      21     273 ..      20     276 .. 0.90

  Alignments for each domain:
  == domain 1  score: 211.2 bits;  conditional E-value: 9.5e-67
        NIF3   2 ivevleelaplelae.swDnvGlqvg..dpekevkkvllaldlteevleeAiekgadliithHPlifkplkrlteddykkrllkkliknnislysaHtn 97 
                 +v+ +++l+p+ela+ swDnvGl+v+  d e++  +vl+++dlt +v+++Ai++ga++i+++HP+if++lk++t++d++++ l +l+k++i++y++Ht+
  CCE30492.1  21 VVKSMKKLYPEELADrSWDNVGLLVDnpDVERQRPSVLVTNDLTWQVADDAISQGASVIVSYHPFIFSGLKSITSSDAQQATLLRLAKEGIAVYCPHTS 119
                 7899**********99**********5556668999*************************************************************** PP

        NIF3  98 lDaapgGvndwlakal.....glekieplepskeekkeeeeglgrigeleepvsleelakklkkkl.glekvrva.....gdldkkvkkvaicaGsGas 185
                 +Daap+G+n+wla+ +       +++ +  p+  + +++ +g+g +g++e+pvsl e++k+l+++l gl++++va       + ++v+++ +caGsG +
  CCE30492.1 120 VDAAPQGLNTWLADIVsgphaSQRSVANPCPTAPK-SHAPAGYGTLGKFEKPVSLVEILKRLAAELgGLQHIMVAspvgaDIKTTSVQSFGVCAGSGYD 217
                 ****************7665433344444444433.5667**************************99******98886336778999**********9 PP

        NIF3 186 lieeakakgaDlliTGelkhhealdakekgiavidvgHyatErvflea.laelLkeklk 243
                 ++   k+++++ll+TGe++hh al a ++g +++ v H+++Er++l + la +L+++l+
  CCE30492.1 218 IL---KKADVELLVTGETSHHSALRAIQQGRTLVQVFHSNSERGYLHKvLAPRLEKELQ 273
                 99...88899************************************9989999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2276.77
//
Query:       CCE30493.1  [L=104]
Description: uncharacterized protein CPUR_04341 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-21   75.3   0.0    9.6e-21   73.9   0.0    1.6  1  BolA      BolA-like protein


Domain annotation for each model (and alignments):
>> BolA  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   5.4e-25   9.6e-21       1      76 []      13      79 ..      13      79 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 5.4e-25
        BolA  1 LtealkpehlevedeShkhaghaeaggetHFkvvivseaFegkslvarhRlvyalLkeelakgiHALslktktpee 76
                +t++l+++h+ev d+S        +g++++F+++ivs++F+g+++++rhRl++a+Lkee+a+ iHA++ k++tpee
  CCE30493.1 13 ITHRLQATHVEVADMS--------GGCGQAFTCLIVSPEFKGLNSLKRHRLINAALKEEIAA-IHAWTAKCQTPEE 79
                6889999999999999........478999********************************.***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 772.91
//
Query:       CCE30494.1  [L=747]
Description: related to beta-adaptin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.9e-135  452.4   1.5   2.6e-135  451.9   1.5    1.0  1  Adaptin_N      Adaptin N terminal region
    1.1e-61  207.6   1.2    9.7e-60  201.3   0.1    2.9  3  Cnd1           non-SMC mitotic condensation complex subunit 1
    1.5e-16   60.6   0.2    5.2e-07   30.0   0.0    5.4  7  HEAT_2         HEAT repeats
    4.4e-12   45.1   2.9      0.013   15.7   0.0    6.3  8  HEAT           HEAT repeat
     0.0001   22.7   0.1       0.29   11.7   0.0    4.8  4  HEAT_EZ        HEAT-like repeat
    0.00095   19.1   1.9      0.044   13.7   0.0    3.0  4  UNC45-central  Myosin-binding striated muscle assembly centra
  ------ inclusion threshold ------
      0.015   15.5   0.4        4.9    7.4   0.0    4.0  4  RTP1_C1        Required for nuclear transport of RNA pol II C
       0.27   11.1   1.4       0.43   10.5   0.2    2.0  2  Sec7_N         Guanine nucleotide exchange factor in Golgi tr
        2.4    8.2   3.9        4.5    7.3   3.9    1.4  1  Auts2          Autism susceptibility gene 2 protein


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  451.9   1.5  1.3e-138  2.6e-135       4     521 ..      16     531 ..      14     533 .. 0.95

  Alignments for each domain:
  == domain 1  score: 451.9 bits;  conditional E-value: 1.3e-138
                 HCCHHHHHHCCSSS-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHHHHHHH CS
   Adaptin_N   4 riqqelaeilnsnkdddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirglALrv 102
                  ++ el++ l s+  +  ++ke ++k i  ++lG+dvs lf++v+k++a+ d+ +K+lvYlyl+++a++++dl++L++n++ +D +dpn+l+r+lA+r+
  CCE30494.1  16 GETFELRAGLVSQ--YAYERKESIQKTIMAMTLGKDVSALFPDVLKNIATADLDQKKLVYLYLMNYAKSHPDLCILAVNTFVQDTEDPNPLVRALAIRT 112
                 5677888899999..9999******************************************************************************** PP

                 HCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCC.HHHHHHHCCHH CS
   Adaptin_N 103 LssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleei.kkndrlll.kllpklvrrLc 198
                 +++irv+++++++++ ++k+l+d+spyvrk+Aa++++kl++++p+ + ++ ++e ++e + d +p+vv++ v++l ei +  +++ +  + p   ++L 
  CCE30494.1 113 MGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSMCIENgFLETVQEMIGDPNPMVVANSVQALSEIsESAPDIGAlVITPATLKKLL 211
                 ******************************************************************************8666666557999******** PP

                 HHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST......HHHCCHHCHHHHHHSSCCTCHHHHHCHH CS
   Adaptin_N 199 nllteldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapkne......livlavnaLvrllsskdenlryvaLrtl 291
                  +l+e+++w+ ++++ +l ++ +++ +e+  + ++e+  +++q++n+aV+l++++++++ +++ +      l+++++  Lv+l+ s +e ++yvaLr++
  CCE30494.1 212 MALNECTEWGRITVLTTLANYPATDMKES--EHICERAVPQFQHVNPAVVLAAIKVVFTHMQSVNpemvrsLLKKMAPPLVTLVASAPE-VQYVALRNI 307
                 *****************************..56***********************9955555555999********************.********* PP

                 HHHHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXX CS
   Adaptin_N 292 lkivkkepkavqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekfatdaewvldvllellslsg 390
                   +++ + + + ++++++f++k++d+ ++++ +l++++++++e+N ++++ eLk+y+ ev d df++++vkaIg++a+k+++  +++++ l +l+s++ 
  CCE30494.1 308 DLLLQAK-PDILSKEMRVFFCKYNDPPYVKMQKLEIMVRIANEKNYEQLLAELKEYALEV-DMDFVRRAVKAIGQVAIKIENASAKCVQALEDLISTKV 404
                 *******.9999*********************************************999.************************************** PP

                 HHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT...HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC. CS
   Adaptin_N 391 esvkdeivevirdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsntesasdllrslaekfvlesekvklqiltalvKlyltspdke 489
                 ++v++e+v+v++d+++k+p   e ii +L+e++++++++ ar ++iW++Gey+e++sn   a ++l+ +   f++e ++++lqilta vKl+l +p   
  CCE30494.1 405 NYVVQEVVVVVKDILRKYPGY-EGIIPTLCEYIDELDEPSARGSLIWIVGEYAEKISN---ADQILEGFVDGFMEEFTQTQLQILTAVVKLFLKKPG-- 497
                 ********************9.66**********************************...***********************************5.. PP

                 THXHHHHHHHHHHH..XXSHHHHHHHHHHHHHHC CS
   Adaptin_N 490 tqekliqlvlslat..ssdlevrdRaveylqlls 521
                 +++ l+q +l+ at  +++ ++rdRa++y++lls
  CCE30494.1 498 NTQGLVQKILQAATaeNDNPDIRDRAYIYWRLLS 531
                 334688888888887988**************97 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.6   7.2e+03      92     129 ..      49      82 ..      41      85 .. 0.74
   2 !  201.3   0.1   4.9e-63   9.7e-60       1     161 [.     104     267 ..     104     268 .. 0.98
   3 ?    4.1   0.1     0.021        43       7     154 ..     375     519 ..     370     527 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.6
        Cnd1  92 aiynllpdiisklsdalnecsewgqitilefLlsyipk 129
                  +  l+pd+++++     +++ ++ + ++ +L++y ++
  CCE30494.1  49 DVSALFPDVLKNIA----TADLDQKKLVYLYLMNYAKS 82 
                 56677888888888....56778888888888888765 PP

  == domain 2  score: 201.3 bits;  conditional E-value: 4.9e-63
        Cnd1   1 liRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteiseksena.iynl 96 
                 l+Ralairt+gcirv+++v+y+ epLrk+L+De+pyVRktaai+vakL  +++ m++e+gfl+++++++ D+np+Vvan++ al+eise ++++ ++ +
  CCE30494.1 104 LVRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLfdLNPSMCIENGFLETVQEMIGDPNPMVVANSVQALSEISESAPDIgALVI 202
                 79****************************************************************************************777648999 PP

        Cnd1  97 lpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikviL 161
                 +p +++kl++alnec+ewg+it+l++L++y + d +e e+++e+ +p++qh+n+avvlaaikv+ 
  CCE30494.1 203 TPATLKKLLMALNECTEWGRITVLTTLANYPATDMKESEHICERAVPQFQHVNPAVVLAAIKVVF 267
                 9**************************************************************85 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.021
        Cnd1   7 irtlg..cirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleD.enprVvanalaalteiseksenaiynllpdiis 102
                 ++++g  +i+++n   + v+ L+  ++ +  yV +  ++vv   il+++   +g++ +l + +++ ++p+ + + + +  e++ek  +++ ++l   + 
  CCE30494.1 375 VKAIGqvAIKIENASAKCVQALEDLISTKVNYVVQEVVVVVKD-ILRKYPGYEGIIPTLCEYIDElDEPSARGSLIWIVGEYAEKI-SNADQILEGFVD 471
                 5566666666666666666666666666666666655544444.444555556666666666633134555666666666666664.223333333333 PP

        Cnd1 103 klsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvl 154
                  +     e   ++q +il+++++   k+  +++ lv+k+ +  +++n+   +
  CCE30494.1 472 GFM----EEFTQTQLQILTAVVKLFLKKPGNTQGLVQKILQAATAENDNPDI 519
                 333....333467888999998877777777999999999988888876555 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   2.5e-08   4.9e-05       4      57 ..      94     150 ..      91     158 .. 0.80
   2 !   30.0   0.0   2.6e-10   5.2e-07       2      79 ..     127     222 ..     126     230 .. 0.78
   3 ?    1.3   0.0      0.23   4.6e+02       4      71 ..     210     285 ..     207     296 .. 0.61
   4 ?    5.0   0.0     0.016        32       4      87 ..     289     378 ..     286     379 .. 0.71
   5 !   10.1   0.0    0.0004       0.8      14      82 ..     333     411 ..     326     416 .. 0.73
   6 !   12.1   0.0   9.9e-05       0.2      14      81 ..     368     446 ..     353     453 .. 0.75
   7 ?    1.5   0.0      0.19   3.8e+02       2      83 ..     430     523 ..     429     526 .. 0.57

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.5e-08
      HEAT_2   4 LlqalendpdpevrraairaLgrignpea....lpaLvellededpavRraaaeaLga 57 
                 ++q   +dp+p vr+ air++g i+ ++      + L++ l+de+p+vR++aa   ++
  CCE30494.1  94 FVQDT-EDPNPLVRALAIRTMGCIRVDKMvdymEEPLRKTLRDESPYVRKTAAICVAK 150
                 55666.8***************6655544333489999999************98877 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 2.6e-10
      HEAT_2   2 daLlqalendpdpevrraairaLg...rignp......ealpaLvellededpavRraaaeaLgaig...........dpealpaLkellddddddvv 79 
                 ++L + l +d++p+vr++a+++ +   ++ np        l+++ e++ d++p+v ++ ++aL++i            +p++l+ L+++l++ +++ +
  CCE30494.1 127 EPLRKTL-RDESPYVRKTAAICVAklfDL-NPsmcienGFLETVQEMIGDPNPMVVANSVQALSEISesapdigalviTPATLKKLLMALNECTEWGR 222
                 6899999.9***************65522.3323443355************************99544444446666699*********99998873 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.23
      HEAT_2   4 LlqalendpdpevrraairaLg.....ri.gnpealpaLvellededpavRraaaeaL.gaigd..pealpaLkell 71 
                 Ll al n   +  r++++ +L+     ++  ++ + +  v+  ++ +pav  aa++     +++  pe +++L++ +
  CCE30494.1 210 LLMAL-NECTEWGRITVLTTLAnypatDMkESEHICERAVPQFQHVNPAVVLAAIKVVfTHMQSvnPEMVRSLLKKM 285
                 55555.44444557777788885443322023344666666668889*******99774444433377776666655 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.016
      HEAT_2   4 LlqalendpdpevrraairaLg..rignpealpaLvell..eded.pavRraaaeaLgaigd....pealpaLkellddddddvvReaAaeaL 87 
                 L+ ++   + pev++ a+r++    ++ p++l    ++   +  d p+v ++  e +++i++    ++ l+ Lke++++ d d+vR+ A++a+
  CCE30494.1 289 LVTLV--ASAPEVQYVALRNIDllLQAKPDILSKEMRVFfcKYNDpPYVKMQKLEIMVRIANeknyEQLLAELKEYALEVDMDFVRR-AVKAI 378
                 55555..366889999999999765567777665555443465555799999999999997533347789999**999999999998.58887 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.0004
      HEAT_2  14 pevrraairaLgrignp....ealpaLvellededpavRraaaeaLgaig......dpealpaLkellddddddvvRea 82 
                 p+v+ + ++ + ri+n+    ++l+ L e++   d++  r a++a+g+++      + + ++aL++l  ++ ++vv+e 
  CCE30494.1 333 PYVKMQKLEIMVRIANEknyeQLLAELKEYALEVDMDFVRRAVKAIGQVAikienaSAKCVQALEDLISTKVNYVVQEV 411
                 6677777777777766655558899999999889999999999999977444443356668999999988888888775 PP

  == domain 6  score: 12.1 bits;  conditional E-value: 9.9e-05
      HEAT_2  14 pevrraairaLg....rignp..ealpaLvellededpavRraaaeaLgai.....gdpealpaLkellddddddvvRe 81 
                  +  r+a++a+g    +i n   ++++aL +l++++  +v ++++     i     g +  +p L+e+ d+ d++  R 
  CCE30494.1 368 MDFVRRAVKAIGqvaiKIENAsaKCVQALEDLISTKVNYVVQEVVVVVKDIlrkypGYEGIIPTLCEYIDELDEPSARG 446
                 455689999***6656333333388********************9998776766778999*****9998877766665 PP

  == domain 7  score: 1.5 bits;  conditional E-value: 0.19
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp.....ealpaLvellededpavRraaaeaLgai.....g.dpealpaLkellddddd.dvvReaA 83 
                 ++L++++ +  +p  r   i+  g+++++     ++l+ +v+    e + ++ ++ +a +++     g ++  ++  +++++ ++d +++R +A
  CCE30494.1 430 PTLCEYIDELDEPSARGSLIWIVGEYAEKisnadQILEGFVDGFMEEFTQTQLQILTAVVKLflkkpGnTQGLVQKILQAATAENDnPDIRDRA 523
                 6677777777777777777777775555544444666666666666667777777777776655443313444444444444444336777665 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0     0.003       5.9       8      26 ..      97     115 ..      91     116 .. 0.80
   2 !   14.9   0.0   1.2e-05     0.023       5      27 ..     129     151 ..     127     154 .. 0.89
   3 !   15.7   0.0   6.5e-06     0.013       1      29 [.     164     192 ..     164     194 .. 0.93
   4 ?   -2.9   0.0         6   1.2e+04      10      22 ..     252     264 ..     250     266 .. 0.82
   5 ?    0.5   0.1       0.5   9.9e+02       4      27 ..     288     310 ..     286     313 .. 0.77
   6 ?   -2.7   0.0       5.5   1.1e+04      20      28 ..     374     382 ..     371     383 .. 0.83
   7 ?   -1.9   0.0         3   6.1e+03       1      29 [.     428     457 ..     428     459 .. 0.72
   8 ?   -3.4   0.0       8.8   1.8e+04      10      20 ..     513     523 ..     504     524 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.003
                 HHT-SSHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLga 26 
                   +Dp+p VR+ A++++g 
  CCE30494.1  97 DTEDPNPLVRALAIRTMGC 115
                 458************9985 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.2e-05
                 HHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgal 27 
                 l k l+D+sp VR++Aa ++++l
  CCE30494.1 129 LRKTLRDESPYVRKTAAICVAKL 151
                 7789***************9988 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 6.5e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 +l ++++++ Dp+p V +++++aL +++e
  CCE30494.1 164 FLETVQEMIGDPNPMVVANSVQALSEISE 192
                 58899**********************98 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 6
                 T-SSHHHHHHHHH CS
        HEAT  10 sDpspeVReaAak 22 
                 ++ +p V  aA+k
  CCE30494.1 252 QHVNPAVVLAAIK 264
                 677999*99*997 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.5
                 HHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgal 27 
                 +l++ l  ++peV + A++++  l
  CCE30494.1 288 PLVT-LVASAPEVQYVALRNIDLL 310
                 5666.46899********998766 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 5.5
                 HHHHHHHHH CS
        HEAT  20 AakaLgala 28 
                 A+ka+g++a
  CCE30494.1 374 AVKAIGQVA 382
                 999999976 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 3
                 HHHHHHHHHT-..SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsD..pspeVReaAakaLgalae 29 
                 ++P+l++ + D  ++p+ R + ++ +g+ ae
  CCE30494.1 428 IIPTLCEYI-DelDEPSARGSLIWIVGEYAE 457
                 789999975.557777777777777777666 PP

  == domain 8  score: -3.4 bits;  conditional E-value: 8.8
                 T-SSHHHHHHH CS
        HEAT  10 sDpspeVReaA 20 
                 + ++p++R+ A
  CCE30494.1 513 ENDNPDIRDRA 523
                 45899999876 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.058   1.2e+02      38      54 ..      99     115 ..      93     116 .. 0.88
   2 !   11.7   0.0   0.00015      0.29       3      54 ..     105     150 ..     103     151 .. 0.86
   3 ?    2.4   0.0      0.12   2.3e+02      35      55 .]     170     190 ..     163     190 .. 0.86
   4 ?   -0.2   0.1      0.77   1.5e+03      13      36 ..     268     292 ..     256     304 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.058
     HEAT_EZ  38 nddsdeVRaaAagaLgn 54 
                 +d++++VRa A+++ g 
  CCE30494.1  99 EDPNPLVRALAIRTMGC 115
                 799*********99875 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00015
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 vR+ A++++G++       + ++v+ +  +L ++L+d+s+ VR++Aa++ ++
  CCE30494.1 105 VRALAIRTMGCIR------VDKMVDYMEEPLRKTLRDESPYVRKTAAICVAK 150
                 7888888888777......7789999999******************99776 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.12
     HEAT_EZ  35 alLnddsdeVRaaAagaLgnl 55 
                  +  d++++V a+++ aL+ +
  CCE30494.1 170 EMIGDPNPMVVANSVQALSEI 190
                 67889*************986 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.77
     HEAT_EZ  13 r.laggepellqplvpeilpaLlal 36 
                 + + +++pe ++ l++++ p+L+ l
  CCE30494.1 268 ThMQSVNPEMVRSLLKKMAPPLVTL 292
                 2577788888888888888888754 PP

>> UNC45-central  Myosin-binding striated muscle assembly central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.2e-05     0.044      13      93 ..     135     216 ..      87     243 .. 0.87
   2 ?   -3.9   0.0         6   1.2e+04     117     132 ..     344     359 ..     343     365 .. 0.83
   3 ?   -3.6   0.0       4.9   9.9e+03     123     136 ..     390     403 ..     380     418 .. 0.55
   4 ?    3.9   0.0     0.024        48      16      83 ..     478     545 ..     429     576 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.2e-05
                    ---TTHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHSCCTHHHHHHHHHHHHHHHHSSHHHHHHHHTSTTHHHHHHHHHH CS
  UNC45-central  13 rqpesvrslallilsklldaake.efeeaiseflesllekgdeddllnalsvltalFpvvpdvasalflsegflesllelve 93 
                    ++++ vr +a ++++kl+d +    +e+ + e++++ + +++   + n +++l+++ + +pd+++ +++  +++++l++l e
     CCE30494.1 135 DESPYVRKTAAICVAKLFDLNPSmCIENGFLETVQEMIGDPNPMVVANSVQALSEISESAPDIGALVITPATLKKLLMALNE 216
                    67899*************99655167789***********************************************999865 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6
                    SSHHHHHHHHHHHHHH CS
  UNC45-central 117 crkaiaknyvewLeel 132
                    +r a+ kny ++L el
     CCE30494.1 344 VRIANEKNYEQLLAEL 359
                    5889999999999886 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 4.9
                    HHHHHHHHHHHH-S CS
  UNC45-central 123 knyvewLeelvkss 136
                     ++v+ Le+l+ ++
     CCE30494.1 390 AKCVQALEDLISTK 403
                    34444444444433 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.024
                    TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHHHHHSSHHHHHHHHTSTT CS
  UNC45-central  16 esvrslallilsklldaakeefeeaiseflesllekgdeddllnalsvltalFpvvpdvasalflseg 83 
                     +++ ++l +++kl+ ++  +++  ++++l++  ++ d+ d+     +   l+ ++ dva++++ls++
     CCE30494.1 478 TQTQLQILTAVVKLFLKKPGNTQGLVQKILQAATAENDNPDIRDRAYIYWRLLSGDLDVAKTIVLSKK 545
                    5677889999999**9999**********************************************983 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0025       4.9       6      73 ..     131     196 ..      91     203 .. 0.79
   2 ?    4.2   0.0     0.024        47       6      82 ..     170     284 ..     165     301 .. 0.65
   3 ?   -2.2   0.0       2.4   4.8e+03      62     105 ..     338     381 ..     334     388 .. 0.76
   4 ?   -1.7   0.0       1.6   3.2e+03      18      79 ..     391     411 ..     373     442 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0025
     RTP1_C1   6 kdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpe 73 
                 k l+d+ + vr  + +  +kl+  +   ++   +  l++++e++ d+++ v  n++++L+++ +  p+
  CCE30494.1 131 KTLRDESPYVRKTAAICVAKLFDLNP--SMCIENGFLETVQEMIGDPNPMVVANSVQALSEISESAPD 196
                 56777777777777777777777776..7777788999999999999999999999999999888775 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.024
     RTP1_C1   6 kdlqdpllpvrahglvlLrkliekkske.......................................avldiekilkllleaLkdedsYvYLnaikgLv 65 
                 + + dp + v a+ ++ L+++ e+   +                                       ++++ e+i +  + + ++ ++ v L+aik++ 
  CCE30494.1 170 EMIGDPNPMVVANSVQALSEISESAP-DigalvitpatlkkllmalnectewgritvlttlanypatDMKESEHICERAVPQFQHVNPAVVLAAIKVVF 267
                 45555555555555555555555553.235555555555555555555566666666666666666677788888888888888888888888888887 PP

     RTP1_C1  66 aLadvfpeevlklLlee 82 
                 + ++ ++ e+++ Ll++
  CCE30494.1 268 THMQSVNPEMVRSLLKK 284
                 77777777777777765 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.4
     RTP1_C1  62 kgLvaLadvfpeevlklLleeyeeenekeslderlkvGEaLlrv 105
                 + L+ ++ + +e+  ++Ll+e +e + + ++d   ++  a+ +v
  CCE30494.1 338 QKLEIMVRIANEKNYEQLLAELKEYALEVDMDFVRRAVKAIGQV 381
                 67888999999999999999998888888888777776666666 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.6
     RTP1_C1  18 hglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklL 79 
                 ++++ L++li++k                                          + v++++
  CCE30494.1 391 KCVQALEDLISTK-----------------------------------------VNYVVQEV 411
                 4444444444444.........................................33333333 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00021      0.43      22     115 ..     241     333 ..     222     373 .. 0.76
   2 ?   -3.3   0.1       3.6   7.3e+03      75     102 ..     542     569 ..     536     575 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00021
      Sec7_N  22 k...pkfl.slaersktfsLeLlesvlsnhgdvfrkhpellqllkqklcplLlknlsespsfpvferslrivllLlkkfrseLktEievflsllilil 115
                 +   ++ + ++++ +  + L  ++ v+++ ++v   +pe++  l +k+ p L++++   ++++v  ++lr + lLl+   + L +E+ vf+   + + 
  CCE30494.1 241 EhicERAVpQFQHVNPAVVLAAIKVVFTHMQSV---NPEMVRSLLKKMAPPLVTLV--ASAPEVQYVALRNIDLLLQAKPDILSKEMRVFFCKYNDPP 333
                 144555555788889999999999999888875...69**9999999999999999..5788888889**********************98776665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.6
      Sec7_N  75 espsfpvferslrivllLlkkfrseLkt 102
                  s+++++++ ++++   Ll++++seL t
  CCE30494.1 542 LSKKPTITTTMTSLPPALLEQLLSELST 569
                 5677777777788888888888888776 PP

>> Auts2  Autism susceptibility gene 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.9    0.0023       4.5      46     145 ..     636     736 ..     618     743 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0023
       Auts2  46 ppgp.gllgglpyphdlarpatlfsatgaahpaatpf.gpsphhssfltpaahldpfsrsstfggLgalssnaFgGLgsptltassvf...gqkegpal 139
                  p++    ++ + p  +a p+   ++ g a+  ++ f +p++  +s +t+aa  +  + s  ++gL  l   +FgG gs +l +s+     +++eg + 
  CCE30494.1 636 APAShEQKSASATPDRMASPSGGAPSGGMAD-MMSMFdAPPADAGSSVTAAATSSGNGMSDLMSGLDGL---NFGGNGSSSLPSSATMqlsSSQEGDKH 730
                 444413344567899*****99999988885.5889978888999999999999***********6666...9******99965544311134455555 PP

       Auts2 140 qglssp 145
                  ++ sp
  CCE30494.1 731 RQMKSP 736
                 555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 4894.50
//
Query:       CCE30495.1  [L=872]
Description: related to DNA ligase (ATP) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-49  167.0   0.0    5.1e-47  160.2   0.0    2.3  2  DNA_ligase_A_M   ATP dependent DNA ligase domain
    1.2e-34  120.2   0.0    2.4e-34  119.1   0.0    1.6  1  DNA_ligase_A_N   DNA ligase N terminus
    2.8e-19   69.5   0.0    1.2e-18   67.5   0.0    2.2  2  DNA_ligase_A_C   ATP dependent DNA ligase C terminal region
      2e-05   25.0   0.0    3.4e-05   24.2   0.0    1.3  1  RNA_ligase       RNA ligase
  ------ inclusion threshold ------
      0.024   14.9   0.1        2.2    8.5   0.0    2.5  2  PHM7_cyt         Cytosolic domain of 10TM putative phosphate 
      0.082   12.7   0.0        2.5    7.9   0.0    2.2  2  mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain


Domain annotation for each model (and alignments):
>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.2   0.0   1.7e-50   5.1e-47       1     187 [.     426     613 ..     426     624 .. 0.96
   2 !    4.6   0.0    0.0075        22     185     204 .]     666     685 ..     665     685 .. 0.89

  Alignments for each domain:
  == domain 1  score: 160.2 bits;  conditional E-value: 1.7e-50
                     -EEEEEESCHHHHHHHTTTSEEEEEEEESSEEEEEEE.ETTEEEEEETTS-B-GGGCHHHHHHHHHHBSTTESEEEEEEEEEEEETTTTCBEHHH CS
  DNA_ligase_A_M   1 pmLAeslksiekalkkleekafivEiKyDGeRaqvhk.egdkvklfSRrlkditaakpelvkalkeafkkdeksvilDGElvavdketgeilpfq 94 
                     pmL + +++++++l+kl++++f +E+KyDG+Raq+h   ++kv++fSR l+ +t+++p+lv  + +++ + ++s+i++GE+va+d  +ge   fq
      CCE30495.1 426 PMLGSITRDLSEMLTKLQGRDFACEWKYDGQRAQIHCdAQGKVSIFSRHLELMTGKYPDLVHLIPKIRSEGVRSFIMEGEVVAIDHCSGELKSFQ 520
                     9***********************************9899******************************************************* PP

                     HHCHHHHCHCCTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEEE..SSHHHHHHHHHHHHHTTECEEEEEET CS
  DNA_ligase_A_M  95 klasrkkkkkkveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaeslev..kdveeleelleeaiseglEGlvvKnp 187
                     +l++r++k++++ ++  ++ +c+f+FD++yl++++l+d  ++eRr+lL+++++e ++r+  ++s++   +d+e++ e+++ a ++++EG++vK  
      CCE30495.1 521 TLTNRARKDVDIGTI--KVGVCFFAFDLMYLNEQPLLDSAFRERRELLRSLFTEVPHRFTWVTSIDAtsSDSETVLEFFKSATESKCEGIMVKIL 613
                     ***************..**********************************************99874478899*******************74 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0075
                     EETT-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 185 KnpdskYepgkrsknwlKvK 204
                     K   ++Yep+kr + wlKvK
      CCE30495.1 666 KPLLATYEPDKRLDCWLKVK 685
                     556789*************9 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0     8e-38   2.4e-34       2     172 ..     169     345 ..     168     346 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 8e-38
                     CHHHHHHHHHHCC.---HHHHHHHHHHHHHTS-..SHHHHHHHHHH....SS-CCCS------HHHHHHHHHHHHT--HHHHHHHHHHHS-HHHH CS
  DNA_ligase_A_N   2 FaelaelfekieestkkrlekrailanffrkvesagpedlypalrL....llPdydgreygigesllakalaealglskkkikdalakvgDlgev 92 
                     +a l++ f  +++ t +r+++++ l n++r +++ +p++l+pa++L    + P+y + e+g+g+s+++kal +++gl+++++k  ++k+gD g+v
      CCE30495.1 169 YAFLTRCFVLVSA-TASRIKIVDSLVNCLRILIEGDPSSLLPAVWLatnsISPAYISLELGLGGSAISKALKQVCGLDSRSLKSLYNKYGDAGDV 262
                     88999********.999****************************************************************************** PP

                     HHHHHCCHHHH.------BHHHHHHHHHHHHH-.STTHHHHHHHHHHHHHHHS.-HHHHHHHHHHHCT---SS--HHHHHHHH CS
  DNA_ligase_A_N  93 aeevlskrstl.akkspltieevnelLdklaaa.gkgsedekkkilkkllkra.speEakyliriilkdlriglsektvldal 172
                     a+e+++k+s + +k++plti+ v++ L k+a++ g+gs ++k++i+ +ll+ a + eE ++++r++ + lrig+ ++t+l al
      CCE30495.1 263 AFEAKKKQSFTlRKPKPLTIKGVYQALVKIASSqGQGSAETKQRIVDRLLQGArGGEESRFVVRTLCQHLRIGAVKTTMLIAL 345
                     ********9999******************9889******************9999************************998 PP

>> DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.7   1.4e+04      21      42 ..     241     263 ..     225     283 .. 0.58
   2 !   67.5   0.0     4e-22   1.2e-18       2      99 .]     710     827 ..     709     827 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.7
                     EEEE-SS--HHHHHHHHHHHG.....G CS
  DNA_ligase_A_C  21 vgkvgtGfsdaeleelrkklk.....e 42 
                     v+    G++ ++l+ l++k+       
      CCE30495.1 241 VC----GLDSRSLKSLYNKYGdagdvA 263
                     44....677777777777765445442 PP

  == domain 2  score: 67.5 bits;  conditional E-value: 4e-22
                     GGSEEEEEEEEEE..TTEEEEEEEE-SS--HHHHHHHHHHHG.........GGEECTTCESS---HHHHTTEEE-TT-EEEEEESEEECTSSSTT CS
  DNA_ligase_A_C   2 gglvgslllgvyd..dgkleyvgkvgtGfsdaeleelrkklk.........elerkkppfaekvpeeekrdvWvePelvveVkfaeitasgkyka 85 
                     +++++ +ll+v++  +g+le v+k+ +Gf+da ++ +++ ++         + + +kp f +   +   +dvW+eP+ v+e +fa+it s++y+a
      CCE30495.1 710 AKWWSPVLLAVRNdeTGTLEAVCKCISGFTDAFYKSMKQFYDdggdseeprNTRAQKPGFIDYRGP--VPDVWFEPQEVWEMAFADITLSPTYTA 802
                     688999*******99999***********************9777666654444445555333333..3559*********************** PP

                     ...........EECT-EEEEE-TTS CS
  DNA_ligase_A_C  86 ...........slRfPrfkrlReDk 99 
                                slRfPrf++ R+Dk
      CCE30495.1 803 akglvseerglSLRFPRFLKKRDDK 827
                     ************************8 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.1e-08   3.4e-05       3     148 ..     447     615 ..     445     621 .. 0.63

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.1e-08
                 EEEEEE-SSEEEEEEEETT..EEEEETTCEB..CTTTHHHHHHTHHHHHHHHHHHHH.....ECCEEEEEEEES.........SS..TTSS........ CS
  RNA_ligase   3 vvvtEKlDGtnfriylvke..vgvasRsqil..pfgeekfkefkrwaaalrkklkekla...neelilyGElig........hsikygglpk....... 79 
                 + ++ K DG +++i+++++  v ++sR  +l  +           ++ +l  +l  k++   ++++i+ GE++         +        +       
  CCE30495.1 447 FACEWKYDGQRAQIHCDAQgkVSIFSRHLELmtG-----------KYPDLV-HLIPKIRsegVRSFIMEGEVVAidhcsgelK--------Sfqtltnr 525
                 66788************6667**********431...........222222.3344444577789*********654433331........13334445 PP

                 ..............EEEEEEEEEEECTTBECE--HHHHHHHHHCCT.....B..EEEEE.SS..HHHHHCCC.H.HHHTC--EEEEEESSS CS
  RNA_ligase  80 ..............efyvFdifdirdkeeqrylspdevealakglg.....tvpvlyegkfl..aaeellelll.skgnkrEGlVikpese 148
                                f++Fd++ ++ ++      ++e+++l+++l         ++++ +++  ++e++le+++   ++k+EG+ +k  ++
  CCE30495.1 526 arkdvdigtikvgvCFFAFDLMYLN-EQPLLDSAFRERRELLRSLFtevphRFTWVTSIDATssDSETVLEFFKsATESKCEGIMVKILDN 615
                 56678899999999********998.33333334555555555332422243344444444444555555554346788********8776 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00073       2.2      76     130 ..     476     545 ..     430     552 .. 0.74
   2 ?    3.6   0.1     0.023        70       5      77 ..     579     663 ..     575     692 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00073
    PHM7_cyt  76 r.............pthklgflglkligkkvdaidyyrekleeldeeieeerekvkkk..plgaaFvtfe 130
                 +             p+ +    + ++++ +v aid+++ +l++ +   +++r+ v+    + g++F  f+
  CCE30495.1 476 ElmtgkypdlvhliPKIRSEGVRSFIMEGEVVAIDHCSGELKSFQTLTNRARKDVDIGtiKVGVCFFAFD 545
                 0444445555555588888888899999**************************9764237899998886 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.023
    PHM7_cyt   5 lvtgiPkelrseeklkeffeelypgkvves..vqivrdvkkldklveerekavrkleaalskykkngkklpkkr............p 77 
                  vt+i    +++e++ eff+++ ++k  e   v i  ++++++  v+  e  +    + ls +++++ k  k+r             
  CCE30495.1 579 WVTSIDATSSDSETVLEFFKSATESKC-EGimVKILDNLANVPYTVHAPEAQELGNTENLSTLNEDKGKA-KTRkkngeapnkklsT 663
                 58999999999**********988886.554488999999999999887766555555555554433222.2222356664444440 PP

>> mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00083       2.5       8      85 ..     437     513 ..     430     523 .. 0.76
   2 ?    2.3   0.0     0.044   1.3e+02      91     123 ..     539     571 ..     530     592 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00083
                      THHHHHHHS-EEEEEEESSEEEEEEEEECTEEEEEEETTS-EEEESSST-BTTSSSSTCTSBGGSEEEEEEEE.EEECT CS
  mRNA_cap_enzyme   8 enlekLkqkkYvvseKaDGiRylmllteeeegvylidRenevyrvenlrfprekdkeklekvldetllDgElv.idkve 85 
                      e l kL+ +++   +K DG R  +  + + + v ++ R+ e+   +  +++   +k + ++  ++ ++ gE+v id++ 
       CCE30495.1 437 EMLTKLQGRDFACEWKYDGQRAQIHCDAQGK-VSIFSRHLELMTGKYPDLVHLIPKIR-SEGVRSFIMEGEVVaIDHCS 513
                      56889***********************965.******99988777666666665444.55566667777776456555 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.044
                      EEEEEEEEEEETTEEGTTSBHHHHHHHHHHHTH CS
  mRNA_cap_enzyme  91 lryliyDivaingvtvaeeplskRleilkkeli 123
                      + +  +D++ +n + + ++ + +R e+l+  + 
       CCE30495.1 539 VCFFAFDLMYLNEQPLLDSAFRERRELLRSLFT 571
                      56889*******************998876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 6207.40
//
Query:       CCE30496.1  [L=232]
Description: related to eukaryotic translation initiation factor 3 subunit 11 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-37  127.0   0.0    7.6e-37  126.5   0.0    1.2  1  CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family


Domain annotation for each model (and alignments):
>> CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.0   4.2e-41   7.6e-37       2     143 ..      63     209 ..      62     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: 126.5 bits;  conditional E-value: 4.2e-41
  CSN8_PSD8_EIF3K   2 lkaelytniLlkaLtqndladfrlllkrlpaaiqqs...deeiqklltLetlLeeanyakfwstlksddlsadltadvagleelvReeiaklvg 92 
                      lk+e++tniL+ka+t +++++f+l+l+++ ++   +    e++ kl +L+  Le  +ya+fw++++ ddl  dl+ad++g+e+++R  ia+l++
       CCE30496.1  63 LKDEVVTNILVKAMTLFPSPQFSLALHLISPSAAATgelAEALAKLRSLNSQLEGSQYAQFWASVDGDDLCTDLIADISGFEDTIRHTIAQLIS 156
                      799****************************999999999****************************************************** PP

  CSN8_PSD8_EIF3K  93 kaYesIsadvlaelLglssdeelekfvkev.gWeldaatvi.vpfnpe.eakpe 143
                      +a+++++   l+++Lgl+ +e++  fv+ev gW++d++++i +p npe eak++
       CCE30496.1 157 QAFRELKLTHLESWLGLN-EEATRTFVTEVaGWTVDGEGNIqIPPNPEnEAKKA 209
                      ******************.****************9777654899999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1807.78
//
Query:       CCE30497.1  [L=360]
Description: related to rat apoptosis protein RP-8 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-46  156.2   0.3    3.2e-45  154.3   0.3    1.9  1  PDCD2_C   Programmed cell death protein 2, C-terminal putativ


Domain annotation for each model (and alignments):
>> PDCD2_C  Programmed cell death protein 2, C-terminal putative domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.3   0.3   1.8e-49   3.2e-45      40     175 .]     215     353 ..     111     353 .. 0.86

  Alignments for each domain:
  == domain 1  score: 154.3 bits;  conditional E-value: 1.8e-49
     PDCD2_C  40 eeeeekskeekeseeeelekyeksldktfekFkkriaaepeQvlRYelggkPLwls...skkspeeesdipkCsnCgskrvFEfQlmPqlinvLeveee 135
                 +++ e+++ ++  ++ ++e++e+s+d tf+kF++r+a++p+Qv+RYe+gg+PL++s   + +++ ++  ip CsnCg++r+FE+Ql+P++i++Le++++
  CCE30497.1 215 NAQIEAADAPDTVSALDKEAFESSMDATFQKFADRLAQNPDQVIRYEFGGAPLLYSktdAVGEKLSKGCIPGCSNCGGSRIFEVQLTPNAITELEADDM 313
                 33334444455558999***************************************5542233344569****************************** PP

     PDCD2_C 136 ekesldWgtilVytCeksCeekeeeeneegyveEfvlvQw 175
                 + e+++Wgti+V +C+k+C ++ ++e+e++y+eE+++vQw
  CCE30497.1 314 SLEGMEWGTIIVGVCAKDCVPRYTDEGESAYLEEWAGVQW 353
                 *******************9999999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3011.74
//
Query:       CCE30498.1  [L=546]
Description: probable CCT6-component of chaperonin-containing T-complex (zeta subunit) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.6e-161  535.7   1.0   1.1e-160  535.5   1.0    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
       0.14   10.7   0.0        0.2   10.1   0.0    1.2  1  Herpes_UL6  Herpesvirus UL6 like


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  535.5   1.0  1.2e-164  1.1e-160       1     490 [.      30     527 ..      30     528 .. 0.98

  Alignments for each domain:
  == domain 1  score: 535.5 bits;  conditional E-value: 1.2e-164
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 l+d++k++lGP G+ Kmlv+ +g+v++T+DG+ +l+e++i++P+a ++++aa++qd+ +GDGTt+vv+L+geLl++a ++i++g+hp++i++g+e a++
  CCE30498.1  30 LQDVLKSNLGPLGTIKMLVDGAGQVKLTKDGNILLREMQIQNPTAVMIARAATAQDDICGDGTTSVVLLVGELLKQADRFISEGLHPRVITDGFEIAKN 128
                 789************************************************************************************************ PP

                 HHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECECTTSEEESEEEESS--SSTTSSCE CS
  Cpn60_TCP1 100 kaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsledselveGlvldkgvlspdmpkk 198
                 +al++L++   ++ +e  dre Ll+vartsl +kl s+ a++l+  +vdAv++i ++  + dl++++++k++++   d++l++Gl+ld+g ++pdmpk+
  CCE30498.1 129 EALQFLDSF--KLAKE-VDRELLLNVARTSLATKLNSTLAKQLTPAIVDAVLAIYQAPAKPDLHMVEIMKMQHRTAADTQLIRGLALDHGARHPDMPKR 224
                 *********..55544.569*******************************9998888999************************************** PP

                 EECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECE..........EEESS-B-HHHHHHHHHCT-EEE-S--HHHHH CS
  Cpn60_TCP1 199 lenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnv..........vvcqkgiddlalhflakngilalrrvkkkdle 287
                 len+++l+++ +Le+ekte+++++ +s+a++++kl+++e+++++ +l+ki+++++++          +++qkgid+l+l++lakngilalrr+k++++e
  CCE30498.1 225 LENCYILTMNIGLEYEKTEVNSSFFYSSADQRDKLVQSERRFIDAKLKKIVDLKKELcgtdgtknfvIINQKGIDPLSLDILAKNGILALRRAKRRNME 323
                 *************************************************************************************************** PP

                 HHHHHHT--EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHH CS
  Cpn60_TCP1 288 rlakatGatavssledltpeelGtakkveeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakk 386
                 rl  ++G+ a +sledl+ + lG+a+ v+e+++g+ek+t++eevk++k++t++++g++++++ ++ +a++d+l++v n+i d+ vvpG+Ga+ +++a++
  CCE30498.1 324 RLQLICGGVAQNSLEDLSADVLGWAGLVYEQTLGEEKYTFVEEVKDPKSVTLMIKGPNQHTISQLTDAVRDGLRSVYNMIVDKSVVPGAGAFQVACARH 422
                 *************************************************************************************************** PP

                 HH..CCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCE CS
  Cpn60_TCP1 387 lk..eyaksvsgeeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLri 483
                 lk  ++++sv+g+ +++++afa+AL++ipktLa NaG+d ++ l+k++++ n+g   +g+++e+ge+ d+  +gv+D+++v r+++ s++ +as +L +
  CCE30498.1 423 LKsdKFKNSVKGKAKFGVDAFADALLIIPKTLAANAGHDVQDALTKMEDEFNEGG-VVGLNLETGEPMDPELEGVFDSFRVLRNCIASSSGIASNLLLC 520
                 *96678899**********************************************.******************************************* PP

                 EEEEXXX CS
  Cpn60_TCP1 484 deiikak 490
                 de +ka+
  CCE30498.1 521 DELLKAR 527
                 ***9987 PP

>> Herpes_UL6  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   2.2e-05       0.2     287     362 ..     365     432 ..     321     441 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 2.2e-05
  Herpes_UL6 287 skksdakkeLlklliklkenktvggitdvVedfleevsnslvdknklldasqpGfgkggasaqssekteqglkksv 362
                 ++ +d+k   + l+ik  ++ t++ +td V+d l+ v n +vdk+       pG g  +  a + +  ++++k+sv
  CCE30498.1 365 EEVKDPKS--VTLMIKGPNQHTISQLTDAVRDGLRSVYNMIVDKSVV-----PGAGAFQV-ACARHLKSDKFKNSV 432
                 56689998..9********************************8777.....55554432.222233344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 4486.43
//
Query:       CCE30499.1  [L=794]
Description: related to SWI5-transcription factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-08   34.3  10.7     0.0024   18.2   0.2    4.1  3  zf-H2C2_2   Zinc-finger double domain
    2.7e-08   33.8  17.3    0.00093   19.5   4.6    4.1  3  zf-C2H2     Zinc finger, C2H2 type
    5.5e-05   23.7  16.0       0.31   12.0   3.9    4.2  3  zf-C2H2_4   C2H2-type zinc finger
  ------ inclusion threshold ------
        1.2    9.2   4.9        4.1    7.6   4.9    2.0  1  AT_hook     AT hook motif
        1.6    8.9   8.8       0.96    9.7   6.3    1.9  2  zf-UBR      Putative zinc finger in N-recognin (UBR box)
        5.6    6.8  12.8        1.5    8.6   1.4    2.9  3  zf-C2H2_11  zinc-finger C2H2-type


Domain annotation for each model (and alignments):
>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2     0.091   2.7e+02      12      25 ..     464     479 ..     460     480 .. 0.80
   2 !   18.0   1.1   9.6e-07    0.0029       3      25 ..     485     507 ..     483     508 .. 0.92
   3 !   18.2   0.2     8e-07    0.0024       1      17 [.     511     527 ..     511     535 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.091
   zf-H2C2_2  12 ekpyeCp..lCdkaFk 25 
                 e +++C    C+k+F 
  CCE30499.1 464 EGKWTCIfeQCGKKFG 479
                 5568999888*****7 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 9.6e-07
   zf-H2C2_2   3 rrHirkHtgekpyeCplCdkaFk 25 
                 + H  +H +++ y+Cp C k F+
  CCE30499.1 485 KSHVQTHLNDRQYQCPTCLKCFV 507
                 78********************8 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 8e-07
   zf-H2C2_2   1 nLrrHirkHtgekpyeC 17 
                 +L+rH + Htg kpy C
  CCE30499.1 511 DLKRHAKIHTGVKPYPC 527
                 69*************99 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.4   5.5e-05      0.17       5      23 .]     473     491 ..     469     491 .. 0.96
   2 !   19.5   4.6   3.1e-07   0.00093       1      23 []     497     519 ..     497     519 .. 0.98
   3 !    8.7   0.5   0.00083       2.5       5      21 ..     528     544 ..     526     545 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.5e-05
                 TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   5 dCgksFkrksnLkrHirtH 23 
                  Cgk+F rk+n k+H +tH
  CCE30499.1 473 QCGKKFGRKENIKSHVQTH 491
                 6*****************9 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 3.1e-07
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y+Cp C k+F r+++LkrH ++H
  CCE30499.1 497 YQCPTCLKCFVRQHDLKRHAKIH 519
                 9********************99 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00083
                 TTTEEESSHHHHHHHHH CS
     zf-C2H2   5 dCgksFkrksnLkrHir 21 
                  Cg sF r + L+rH++
  CCE30499.1 528 QCGNSFARHDALTRHRQ 544
                 6**************97 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.3   0.00049       1.5       5      23 ..     473     491 ..     467     492 .. 0.87
   2 !   12.0   3.9    0.0001      0.31       1      23 [.     497     519 ..     497     520 .. 0.96
   3 !    8.2   0.4    0.0017       4.9       1      21 [.     525     544 ..     525     545 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00049
   zf-C2H2_4   5 iCgksFsskkaLlrHlkth 23 
                 +Cgk F +k+++++H++th
  CCE30499.1 473 QCGKKFGRKENIKSHVQTH 491
                 5*****************9 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.0001
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 ++Cp C k F ++++L+rH k h
  CCE30499.1 497 YQCPTCLKCFVRQHDLKRHAKIH 519
                 89******************998 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0017
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlk 21 
                 ++C +Cg sF +++aL rH +
  CCE30499.1 525 YPC-QCGNSFARHDALTRHRQ 544
                 667.9**************86 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.9    0.0014       4.1       3      12 ..     561     570 ..     561     571 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0014
     AT_hook   3 kRGRPrKaat 12 
                 kRGRPrK+++
  CCE30499.1 561 KRGRPRKNRP 570
                 8******986 PP

>> zf-UBR  Putative zinc finger in N-recognin (UBR box)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         6   1.8e+04      11      21 ..     369     379 ..     364     390 .. 0.58
   2 ?    9.7   6.3   0.00032      0.96      21      60 ..     494     534 ..     473     542 .. 0.66

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 6
      zf-UBR  11 vvyrCltCsld 21 
                 + y+  +Cs+ 
  CCE30499.1 369 ASYSTSDCSKR 379
                 44555555554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00032
      zf-UBR  21 d..etsviCeeCfkaskHeghelvelstkrnggvCdCGdeea 60 
                 d   ++  C +Cf ++ H+  +  +++t  +   C+CG++ a
  CCE30499.1 494 DrqYQCPTCLKCFVRQ-HDLKRHAKIHTGVKPYPCQCGNSFA 534
                 33346899******99.9666666788877778*****9875 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2       3.7   1.1e+04       9      14 ..     473     478 ..     472     479 .. 0.85
   2 ?    8.6   1.4   0.00051       1.5       5      26 ..     497     518 ..     493     519 .. 0.92
   3 ?    5.7   0.6    0.0041        12       8      25 ..     527     544 ..     527     544 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.7
  zf-C2H2_11   9 eCGlcf 14 
                 +CG +f
  CCE30499.1 473 QCGKKF 478
                 7**998 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00051
  zf-C2H2_11   5 cqCleCGlcftSqlsLsRHlfI 26 
                 +qC  C  cf  q  L+RH  I
  CCE30499.1 497 YQCPTCLKCFVRQHDLKRHAKI 518
                 7******************887 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0041
  zf-C2H2_11   8 leCGlcftSqlsLsRHlf 25 
                 ++CG  f+ + +L RH++
  CCE30499.1 527 CQCGNSFARHDALTRHRQ 544
                 69**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       918  (0.051202); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 5648.03
//
Query:       CCE30500.1  [L=679]
Description: uncharacterized protein CPUR_04348 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-32  111.0  10.1    4.8e-09   36.5   0.0    5.3  6  CBS       CBS domain
    5.7e-07   29.4   0.0    1.7e-06   27.8   0.0    1.9  1  PB1       PB1 domain
  ------ inclusion threshold ------
        2.6    7.3   3.9          5    6.4   3.9    1.3  1  NOA36     NOA36 protein


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   5.2e-11   3.1e-07      13      55 ..     105     147 ..      99     149 .. 0.91
   2 !   36.5   0.0     8e-13   4.8e-09       2      47 ..     160     205 ..     159     209 .. 0.93
   3 !   22.4   0.1   2.1e-08   0.00012       8      53 ..     270     314 ..     263     317 .. 0.87
   4 !   23.8   0.1   7.4e-09   4.4e-05       3      47 ..     330     374 ..     328     381 .. 0.88
   5 ?   -3.4   0.0       2.4   1.4e+04      29      40 ..     486     497 ..     482     503 .. 0.75
   6 ?   -3.4   0.6       2.3   1.4e+04       6      17 ..     587     598 ..     583     600 .. 0.73

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 5.2e-11
                 ETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHHH CS
         CBS  13 ppdttleealelmrekgvsrlPVVdedgklvGivtlrDllral 55 
                 +p+tt++ea++lm+ k+ ++++V+d+d+++ Gi+t +Dl+  +
  CCE30500.1 105 KPNTTVSEAAQLMAAKREDCVLVTDDDERIAGIFTAKDLAFRV 147
                 79***********999989**9*****************9765 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 8e-13
                 HHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEE CS
         CBS   2 gdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivt 47 
                 ++imt+++++++ dt+  +al+lm++kg+++lPV+de+  + Gi+ 
  CCE30500.1 160 AEIMTKNPLCARTDTSATDALDLMVRKGFRHLPVMDENQDISGILD 205
                 79*********************************99999999986 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 2.1e-08
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHH CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllr 53 
                 ++ tv+  t+++ea+ +m+e++ +++  V + g + Gi+t +D++ 
  CCE30500.1 270 PPTTVSVRTSVKEAAAMMKENHTTAV-LVQDAGAITGIFTSKDVVL 314
                 788***************66666677.7899************975 PP

  == domain 4  score: 23.8 bits;  conditional E-value: 7.4e-09
                 HHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEE CS
         CBS   3 dimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivt 47 
                  +mt+ + ++p d+t+  al++m + ++  lPV++++g++vG+v 
  CCE30500.1 330 RVMTPHPDFAPMDMTIQAALRKMHDGHYLNLPVMNGEGEIVGMVD 374
                 589**9*9***************444488**************95 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 2.4
                 TSSEEEEEETTT CS
         CBS  29 gvsrlPVVdedg 40 
                 +v+rl VV ++g
  CCE30500.1 486 RVHRLQVVASQG 497
                 499999997776 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 2.3
                 BSSCEEEETTSB CS
         CBS   6 trdvvtvppdtt 17 
                  ++vv+ pp++t
  CCE30500.1 587 ETPVVCTPPTST 598
                 578888888877 PP

>> PB1  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.9e-10   1.7e-06      39      83 ..     530     574 ..     475     575 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.9e-10
                 CCSEEEEEEETTSSEEEESSHHHHHHHHHHHHHTSSCCEEEEEEE CS
         PB1  39 dedvklkYpdedgdlVtitsDeDLeealeearslksktlrlhvqd 83 
                  + ++l+Y d++gd V+it+ +DL+ea+  a++ ++ ++ l+v+d
  CCE30500.1 530 YSGFALSYMDDEGDSVSITTNNDLREAIVLAHQGRRDKVDLFVHD 574
                 5789*****************************6666******97 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.9   0.00083         5     263     291 ..     598     626 ..     592     632 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00083
       NOA36 263 lasgddeddegdedddddddeedddeeed 291
                 +asg +e +++++dddd+d++ed++ e+d
  CCE30500.1 598 TASGLRERNRAYNDDDDEDEDEDEEAEQD 626
                 56777888999999999988888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1071  (0.0597356); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 5032.75
//
Query:       CCE30501.1  [L=404]
Description: related to MRP4-mitochondrial ribosomal protein,small subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-64  215.9   0.2    2.8e-62  209.8   0.2    2.4  1  Ribosomal_S2  Ribosomal protein S2
  ------ inclusion threshold ------
      0.021   14.4   0.2      0.045   13.3   0.2    1.5  1  LDcluster4    SLOG cluster4 family


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.8   0.2   3.1e-66   2.8e-62       1     215 []      76     271 ..      76     271 .. 0.90

  Alignments for each domain:
  == domain 1  score: 209.8 bits;  conditional E-value: 3.1e-66
  Ribosomal_S2   1 LLeagvhfGhqtrrwnpkmkpyIygerngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakrangyyvnerWlgGtLTNfk 97 
                   L+++++h+Gh+ ++wnp++++yIyg+r+gihii+le ++a+lrra +vv+eva +gg ilfvgt++++ e+v++aa+ a+g++v+++W++G +TN +
    CCE30501.1  76 LMASQAHMGHNSSLWNPANSRYIYGVRQGIHIISLEIIAAHLRRASRVVEEVAYRGGVILFVGTRRGQMEIVTKAAELAGGCHVFTKWTPGAITNRD 172
                   89*********************************************************************************************** PP

  Ribosomal_S2  98 tikks..ikklkeleeleedgeldltkkealklkkekekleknlggikkmkklPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIp 192
                    i k+  +k +++l++               +l          ++g++    lPdlvv+l+p +++++++E+  + ip+i+++Dtnvdp++v+y Ip
    CCE30501.1 173 VILKNqaTKVVNHLDNV----------LDGFDL----------YKGLA-RPLLPDLVVCLNPLENYTLLYECGLKSIPTIGVIDTNVDPSWVTYTIP 248
                   ****9333333333322..........112222..........22333.389********************************************* PP

  Ribosomal_S2 193 aNddsirsiklilgvladaieeg 215
                   aNdds+r++ +++gvl++a+++g
    CCE30501.1 249 ANDDSLRAMAVVAGVLGKAGQKG 271
                   *******************9987 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2     5e-06     0.045      18      60 ..     116     159 ..     109     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5e-06
  LDcluster4  18 alelaeelGrliAkeg.avlltGgrtGvmeaaskGakeagGltv 60 
                 +l++a ++ +++A +g ++l+ G r+G me + k+a+ agG  v
  CCE30501.1 116 HLRRASRVVEEVAYRGgVILFVGTRRGQMEIVTKAAELAGGCHV 159
                 56789999999998762667789999***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2931.35
//
Query:       CCE30502.1  [L=590]
Description: probable SPT10-transcription regulatory protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-14   52.6   1.7    7.6e-14   51.7   1.7    1.5  1  zf-H2C2         H2C2 zinc finger
    4.9e-10   39.4   0.1    1.4e-09   37.9   0.1    1.8  1  Integrase_H2C2  Integrase zinc binding domain
    2.5e-05   24.5   0.0    4.9e-05   23.5   0.0    1.5  1  Acetyltransf_1  Acetyltransferase (GNAT) family
     0.0028   17.8   0.0     0.0047   17.1   0.0    1.3  1  Acetyltransf_4  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.019   15.6   0.0      0.057   14.1   0.0    1.7  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
       0.15   12.1   0.0        0.3   11.1   0.0    1.4  1  FR47            FR47-like protein


Domain annotation for each model (and alignments):
>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   1.7   2.5e-17   7.6e-14       1      39 []     303     341 ..     303     341 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 2.5e-17
     zf-H2C2   1 HkltHlGinkltallarkYhwlgiketvseVissCkaCq 39 
                 H   H Gink+ta +a+kYhw +iketvs+V+++C +C+
  CCE30502.1 303 HVIYHGGINKTTATIAEKYHWSRIKETVSDVTRACAECK 341
                 6667**********************************7 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   4.6e-13   1.4e-09       4      53 ..     293     341 ..     290     345 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 4.6e-13
  Integrase_H2C2   4 slrkeilkeaHdsagHlGiektlerlrrryyWpgmrkdvkkyvksCetCq 53 
                     + + ei +++H    H Gi+kt+++++++y+W +++++v ++ ++C +C+
      CCE30502.1 293 ARQYEIARNVHVI-YHGGINKTTATIAEKYHWSRIKETVSDVTRACAECK 341
                     6688999*****7.***********************************7 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.6e-08   4.9e-05      42     117 .]     123     199 ..      78     199 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.6e-08
                     TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTE.SEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  42 geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegi.kkivlaveedndaairlYeklGF 117
                      e +G  s++++++ +  ++   s+    + r++G+G+++ ea++++a + g+ + ++  v e+n+a++r +  lGF
      CCE30502.1 123 KECLGSFSIKPNYPGRSSHICNASFITTDASRNRGVGRLMGEAYIDWAPRLGYtYSVFNLVYETNVASCRIWDALGF 199
                     6789999999999955555555589999999**********************7777547************88**9 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.6e-06    0.0047      61     147 ..     126     212 ..     115     223 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.6e-06
  Acetyltransf_4  61 vGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaei.aspnensiqfhkalGFelvgifkkcikkn 147
                      G + ++ +++ +++ +     ++   +++++g+gr + +a ++ + + ++++ +  + + +n +s  +++alGF+  g+ k+c++  
      CCE30502.1 126 LGSFSIK-PNYPGRSSHICNASFITTDASRNRGVGRLMGEAYIDWAPRLGYTYSVFNLvYETNVASCRIWDALGFKRIGRIKGCGNLR 212
                     5555555.55556666766667777569******************999999866555277799********************9865 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.9e-05     0.057      65     138 .]     124     200 ..      93     200 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-05
  Acetyltransf_3  65 v.iGsvglrdleeedee..aelgymlapsfwgkGyateavralleyafeelgler.lvavidkeNeaSirvleklGfe 138
                     + +Gs ++ +  + + +  ++ +++  ++++++G+++ + +a +++a  +lg+++ ++  + ++N aS r+   lGf+
      CCE30502.1 124 EcLGSFSIKPNYPGRSShiCNASFITTDASRNRGVGRLMGEAYIDWA-PRLGYTYsVFNLVYETNVASCRIWDALGFK 200
                     33888888866666555789999999999******************.777777669999*****************7 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.9e-05       0.3      29      80 ..     149     202 ..     145     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.9e-05
                 E-GGG-SSSHHHHHHHHHHHHHHHS-S-EEE..EEETT-HHHHHHHHHHT-EEE CS
        FR47  29 vlpehrrrGlgsrlvkalakeiaergktvll..vvvasNtpsirlyeklGfeki 80 
                 + +  r+rG g+++ +a +    + g+t ++  +v ++N +s+r++ +lGf+ i
  CCE30502.1 149 TTDASRNRGVGRLMGEAYIDWAPRLGYTYSVfnLVYETNVASCRIWDALGFKRI 202
                 678889*************9999999886553389****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4384.55
//
Query:       CCE30503.1  [L=556]
Description: probable CCT7-component of chaperonin-containing T-complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.1e-154  515.7   7.4   1.3e-154  515.5   7.4    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.028   14.8   0.8         13    6.3   0.1    3.2  3  Rep_fac_C   Replication factor C C-terminal domain
       0.14   12.7   0.0        0.5   10.8   0.0    1.9  1  PNTB_4TM    4TM region of pyridine nucleotide transhydrogenas


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  515.5   7.4  2.1e-158  1.3e-154       2     489 ..      37     525 ..      36     527 .. 0.98

  Alignments for each domain:
  == domain 1  score: 515.5 bits;  conditional E-value: 2.1e-158
                 HHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHHH CS
  Cpn60_TCP1   2 adivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekalek 100
                 + ++k+tlGP G d + v+++gk ++TnDGat++k l+i hPaa++lv++a+sqd evGDGTt+vv+Lage+l+e+++++++gv  + ii+g+++a + 
  CCE30503.1  37 QATIKSTLGPYGGDLLMVDENGKQTITNDGATVMKLLDIVHPAARILVDIARSQDAEVGDGTTSVVVLAGEILKEVKDHVEQGVSAQIIIKGLRRASQL 135
                 5789*********************************************************************************************** PP

                 HHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECECTTSEEESEEEESS--SST...TSS CS
  Cpn60_TCP1 101 aleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsledselveGlvldkgvlsp...dmp 196
                 a++++keia++ +   ++r++L+k+a+t+++skl+++++e+++++vvdAv+++++++  l+ + i+++ki ggsl++s++v+G++++k+++++   + p
  CCE30503.1 136 AVNKIKEIAISTDE-GNRRDTLKKLAATAMTSKLIKRNTEFFTEMVVDAVLSLDQDD--LNEKLIGIKKIPGGSLTESRFVNGVAFKKTFSYAgfeQQP 231
                 ********666654.5899*******************************8887665..99999*****************************99999* PP

                 CEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHHT- CS
  Cpn60_TCP1 197 kklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlakatGa 295
                 k+++++k+++l+v+Le + ++ +++v++++++e++++++ae++++ ++le+++++g++vv+++  i dla++++a+++i+++ rv  +d+er+++atGa
  CCE30503.1 232 KSFKKPKIVCLNVELELKAEKDNAEVRVEQVSEYQAIVDAEWQIIYKKLEALHETGAKVVLSKLPIGDLATQYFADRDIFCAGRVASEDMERVVQATGA 330
                 *************************************************************************************************** PP

                 -EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCT. CS
  Cpn60_TCP1 296 tavssledltpeelGtakkveeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaks. 393
                 t+ s+ +d+ pe+lGt++++ee++ig e++ ++ee++++k++t++lrg  +++++e+er+++dA+ +vk+a+++  +v GGGa+e+e++++l+++a++ 
  CCE30503.1 331 TVQSTCSDILPEHLGTCGNFEERQIGGERFNFFEECPEAKTCTLVLRGGAEQFIAEVERSLHDAIMIVKRAVKNHMIVGGGGAVEMEVSAYLHRFADKs 429
                 ************************************************************************************************987 PP

                 SXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXX CS
  Cpn60_TCP1 394 vsgeeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiika 489
                 ++ ++q +i+afakALe+ip++L+ NaG+d++++l+klr +h kg++++g+d++++ + d+ve+ v++p+ +k +al++Atea ++iL +de+i++
  CCE30503.1 430 ITNKQQAVIKAFAKALEIIPRQLCDNAGFDATDILNKLRVEHRKGKTWAGVDFKTEGVADMVERFVWEPALIKVNALQAATEASCLILGVDETIRN 525
                 999*******************************************************************************************86 PP

>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0022        13      20      46 ..     107     132 ..     104     148 .. 0.85
   2 ?   -3.2   0.0       1.9   1.1e+04      15      33 ..     270     287 ..     260     290 .. 0.74
   3 ?    5.3   0.0    0.0044        26      13      43 ..     437     467 ..     426     474 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHC---HHHHHHHHHHH CS
   Rep_fac_C  20 eaykklrellvekGysaediltqlhrv 46 
                 e+ k+++ + ve+G sa+ i++ l r 
  CCE30503.1 107 EILKEVK-DHVEQGVSAQIIIKGLRRA 132
                 78999*6.**************99775 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.9
                 HT-HHHHHHHHHHHHHHC- CS
   Rep_fac_C  15 ngdfeeaykklrellvekG 33 
                  ++++ +ykkl+  l e G
  CCE30503.1 270 DAEWQIIYKKLE-ALHETG 287
                 478999999995.888877 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0044
                 HHHT-HHHHHHHHHHHHHHC.---HHHHHHHH CS
   Rep_fac_C  13 clngdfeeaykklrellvek.Gysaediltql 43 
                 +  + f++a +++ ++l+++ G+ a+dil++l
  CCE30503.1 437 V-IKAFAKALEIIPRQLCDNaGFDATDILNKL 467
                 3.4889************999*********98 PP

>> PNTB_4TM  4TM region of pyridine nucleotide transhydrogenase, mitoch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.4e-05       0.5      14      52 ..     382     420 ..     373     448 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.4e-05
    PNTB_4TM  14 eviwkVtpaLhtPLmsvtnaisgiiivgallalgstlak 52 
                 + i +V+++Lh ++m v  a+   +ivg+  a++ ++++
  CCE30503.1 382 QFIAEVERSLHDAIMIVKRAVKNHMIVGGGGAVEMEVSA 420
                 5799***********************987777633333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4403.33
//
Query:       CCE30504.1  [L=456]
Description: uncharacterized protein CPUR_04352 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.11   12.3   0.5       0.25   11.2   0.5    1.5  1  Phage_Coat_Gp8  Phage major coat protein, Gp8


Domain annotation for each model (and alignments):
>> Phage_Coat_Gp8  Phage major coat protein, Gp8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   1.4e-05      0.25       2      32 ..     106     138 ..     105     141 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.4e-05
                     HHHHHHHHHHHHHHH.HH.HHHHHHHHHHHHHH CS
  Phage_Coat_Gp8   2 egddatsyAkaAfdS.Lk.aqAteligyaWavV 32 
                     eg++ t+y  + +dS L+  qAte i  +Wa  
      CCE30504.1 106 EGSANTNYTVDSMDSvLQvNQATEKIYKSWANA 138
                     8999***********55546**********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 3875.61
//
Query:       CCE30505.1  [L=643]
Description: related to phenol 2-monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-76  255.9   0.0    7.8e-76  255.6   0.0    1.1  1  FAD_binding_3   FAD binding domain
    1.1e-34  119.9   0.0    1.8e-34  119.1   0.0    1.4  1  Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation d
    0.00017   20.9   0.0       0.01   15.1   0.0    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0005   19.8   0.1       0.21   11.1   0.0    2.2  2  DAO             FAD dependent oxidoreductase
     0.0011   19.4   0.0       0.01   16.3   0.0    2.5  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0075   16.5   0.0      0.029   14.6   0.0    2.0  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.014   14.4   0.0        0.1   11.6   0.0    2.0  2  Lycopene_cycl   Lycopene cyclase protein
       0.03   13.1   0.0      0.047   12.4   0.0    1.3  1  HI0933_like     HI0933-like protein
      0.032   14.7   0.0      0.072   13.6   0.0    1.6  1  XdhC_C          XdhC Rossmann domain
      0.053   13.1   0.0      0.088   12.4   0.0    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.6   0.0   4.4e-79   7.8e-76       3     348 ..      15     373 ..      13     374 .. 0.89

  Alignments for each domain:
  == domain 1  score: 255.6 bits;  conditional E-value: 4.4e-79
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC....CEEEEEHH... CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdt....pkaradle... 91 
                    d++IVGaGp+Glml++ L++ G r   ++ r + ++++radg+++rt++llr++ l++r+ a+  p  + + a++n+ ++t     +     +   
     CCE30505.1  15 DIVIVGAGPVGLMLSTCLARWGYRIKHIDNRPEPTRTGRADGIQPRTLDLLRNMDLKARFMAHK-PARVCEVAFWNP-DRTgndiVRTG---Twas 105
                    899************************************************************9.9999********.55565442222...1234 PP

                    ....CHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECC.CCCCCEEE...ECCTTEE.EEEEEEEEEE--GTT-HHHHHHTGGEEE CS
  FAD_binding_3  92 ....lesspervtvypqteleriLvehaeerglqvrfktevesleqde.egvtaevr...dketgee.etvrakYlvGaDGgrStvrktlgiefeg 178
                        ++++++ +tv+ q  +eri ++++e+ g++v++   +++++ ++ ++ +  v    ++ +g++ etvra+Yl GaDG+rS vr++l i+++ 
     CCE30505.1 106 cpsfIDARYPFTTVLHQGHIERIFISDLESNGVRVQRPWTLQAFKSNDhDNPDYPVCvelKHVKGTQlETVRARYLFGADGARSFVRRQLNIQLKH 201
                    667899*******************************99977776543133332222345566666669************************766 PP

                    EEEE.EEEEEEEEEEEC-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGS.CCCHHHHHHHHHHHHHHTTSSCEE.EEEEEEEE CS
  FAD_binding_3 179 eetv.yeagvldvlfdadlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeer.sekfteeevkarlreivgektldv.eieevsaw 271
                     + v  ++ v+d +++++++di  + + ++s++ ++ mviP+e++ +r yvq++ +  +e + +   te+e+ + +++i ++++++  ++e++s++
     CCE30505.1 202 IDAVeHIWSVVDGVVRTNFPDIKMK-CTVHSRHGSI-MVIPREDNMVRLYVQMTSSSGRELSdRRTATEQEIQELAKKILHPYFIEWeRVEWYSVY 295
                    5554267*************99999.*****99996.*****************99998877588899******************989******* PP

                    EEEEEEESSSEET.TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 272 tvaqrvaekyrkg.rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdf 348
                    +++q +a++y+ + rvf+ GDA+H+h+P++GqG+N+a  Da nLawk+ av  G A ++lL+tYe+er+ va+ +++f
     CCE30505.1 296 PISQGIADSYSLDqRVFIGGDACHTHSPKAGQGMNMAFTDALNLAWKIHAVEGGFAHRDLLKTYESERKGVAESLLKF 373
                    *************************************************************************99987 PP

>> Phe_hydrox_dim  Phenol hydroxylase, C-terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0     1e-37   1.8e-34       1     166 []     420     597 ..     420     597 .. 0.91

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 1e-37
  Phe_hydrox_dim   1 FtsGvgveYqpsllvaevkskqnlatg..............lrpGrrlpsakVvrvaDanpvdlqdeipsdGrfRilvfagdlsdaeqksrlsal 81 
                     FtsG gv Y+p+++        n++++              lr G+++++ +V+rv+Dan+v+l++e+p++G+fRi++ ag+   + +k +ls+l
      CCE30505.1 420 FTSGHGVSYGPNTV--------NWSPShpaisslmhpegtrLRTGHLFLPSNVTRVVDANVVHLEQEVPLNGSFRIFTYAGN--PSVTKIALSDL 504
                     9*************........666666666677999999******************************************..555599***** PP

  Phe_hydrox_dim  82 adalsskesflsrftpada..........dvdsvievllihaaprkeiele.dlPevlrpfdeklgldy.ekvyvddes..yhe.dga.aYekyG 160
                     a+ l+sk sf+s++ ++d           +++ ++++++i+aa+r+ ie++ d+P +l+        +y ++vy+dd++  + +  +a  ++k+G
      CCE30505.1 505 ARGLDSKGSFYSSYIRPDIdtlshherhnPHSLFFTICTIFAANRAHIEISrDVPGLLA--------RYrDHVYADDQWdpRLPtAKAsSHAKMG 591
                     *****999********998********************************56******........************77555444459***** PP

  Phe_hydrox_dim 161 idkkrG 166
                     +d+++G
      CCE30505.1 592 FDQTQG 597
                     **9988 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.6e-06      0.01     144     200 ..      15      72 ..       4      80 .. 0.78
   2 ?    3.4   0.0     0.021        38     182     271 ..     122     223 ..     110     225 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.6e-06
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHHHHHHHHTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaaleealekeGvev 200
                  +iv+vG+G++G+ l+  la+ g+++  ++ r+++   +  + ++ +  + l++++ + 
   CCE30505.1  15 DIVIVGAGPVGLMLSTCLARWGYRIKHIDNRPEPTrTGRADGIQPRTLDLLRNMDLKA 72 
                  6899999999999999999999999999999999855555677777777777766665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.021
                  -HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.........EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEE.....E--TTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxx RF
  Pyr_redox_2 182 dkelsaaleealekeGvevklgtsvkeidgnge.........kle.vvledgeeidadlvvvavGvrpstelleeklglelderggi.....vvdefl 264
                  +  ++++    le +Gv+v+   + +++++n++         +l+ v+ ++ e++ a++++ a G r     + ++l+++l++ +++     vvd   
   CCE30505.1 122 QGHIERIFISDLESNGVRVQRPWTLQAFKSNDHdnpdypvcvELKhVKGTQLETVRARYLFGADGARSFV--R-RQLNIQLKHIDAVehiwsVVDGVV 216
                  55678888999******************99999999998665556777777778888888888777654..3.667777766666655677888888 PP

                  BESSTTE CS
                  xxxxxxx RF
  Pyr_redox_2 265 rtnvpgi 271
                  rtn p+i
   CCE30505.1 217 RTNFPDI 223
                  8888887 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00012      0.21       1      43 [.      15      57 ..      15      86 .. 0.84
   2 !    6.6   0.0    0.0027       4.9     186     313 ..     171     298 ..      99     333 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEE CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgl 43
                d+vi+G+G +Gl     Lar g  +  ++ ++++    +gr+ g+
  CCE30505.1 15 DIVIVGAGPVGLMLSTCLARWGyrIKHIDNRPEPT--RTGRADGI 57
                9******************99999*9999997765..67776665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0027
                 CT.EEEEEEEEEEE--GGGHHHH.HTT.CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTS..EEEEEESSE..EETTCSS CS
         DAO 186 tp.gendaadavVnaaGawsdll.gll.keldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdg..rvlvGgtad..eesgddd 277
                 t+ +++ +a+++  a Ga s ++ ++l  +l + i +v +   v++ + + +++p+  + +   + +++++ v+pr+d+  r++v  t +   e +d +
  CCE30505.1 171 TQlETV-RARYLFGADGARS-FVrRQLnIQL-KHIDAVEHIWSVVDGVVR-TNFPDIKMKCT-VHSRHGSIMVIPREDNmvRLYVQMTSSsgRELSDRR 264
                 333433.3466777777776.5555554444.455667777777766555.55565555555.8888999******99966677766653443333444 PP

                 TSCSHHHHHHHHHHHHHHSGGGCGEEE.EEEEEEEET CS
         DAO 278 pevdeedidellealrklfPqlgdvlr.kwaGlrplp 313
                  +++e++i+el +++ +  P + + +r +w+ ++p  
  CCE30505.1 265 -TATEQEIQELAKKILH--PYFIEWERvEWYSVYPIS 298
                 .6666666666655544..556676766899999942 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.8e-06      0.01       2      35 ..      16      49 ..      15      74 .. 0.88
   2 ?   -1.3   0.0       1.9   3.4e+03      42      70 ..     125     153 ..     122     155 .. 0.81
   3 ?   -2.5   0.0       4.5     8e+03      21      47 ..     223     251 ..     219     255 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.8e-06
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                +v+vG+G +gl+l + la+ g +++ +++++++ 
  CCE30505.1 16 IVIVGAGPVGLMLSTCLARWGYRIKHIDNRPEPT 49
                8******************************998 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHTTEEEECSEEEEEEEEET CS
   Pyr_redox  42 askilqeklekngievllntkveeiegse 70 
                 +++i+   le ng++v    ++++++ ++
  CCE30505.1 125 IERIFISDLESNGVRVQRPWTLQAFKSND 153
                 67888899*******99888888887665 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4.5
                 TTSEEEEEESSSSSS..TTSSHHHHHHHH CS
   Pyr_redox  21 lgkkVtvversdkll..rllDeeaskilq 47 
                 ++ k tv  r+  ++  + +D++++ ++q
  CCE30505.1 223 IKMKCTVHSRHGSIMviPREDNMVRLYVQ 251
                 66677777777777777888887777766 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.6e-05     0.029       1      35 [.      18      54 ..      18      79 .. 0.84
   2 ?   -2.7   0.0       4.1   7.3e+03      42      64 ..     423     445 ..     418     447 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.6e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS..GGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG..Gra 35
                   IvGaG  Gl +   La+ g+++  +++r+ +   Gra
     CCE30505.1 18 IVGAGPVGLMLSTCLARWGYRIKHIDNRPEPTrtGRA 54
                   9***************************998544554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.1
                    TCEECTS---EEETTHHHHCHHH CS
  NAD_binding_8  42 gvrvdygahifhgsgyypnvrrl 64 
                    g+ v yg+++++ s  +p+++ l
     CCE30505.1 423 GHGVSYGPNTVNWSPSHPAISSL 445
                    67789999999554557777666 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.7e-05       0.1       1      41 [.      15      53 ..      15      56 .. 0.94
   2 ?    0.2   0.0      0.16   2.9e+02     169     316 ..     215     367 ..     163     382 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.7e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnn 41
                   D+v++GaGp gl l   l  a+ g ++  i+  p++ ++++
     CCE30505.1 15 DIVIVGAGPVGLMLSTCL--ARWGYRIKHIDNRPEPTRTGR 53
                   9*****************..99**********999999875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.16
  Lycopene_cycl 169 ldkmvlMDfrveqkl.kgltFlYalPldsd..rllvEeTelaskpeLp..adalkkrlaaylra.lglkvkevveeEq.gviPvtlggslprleqk 257
                    + +  + D +++  +      + ++P +++  rl+v  T+ + ++ L+  + a ++ +++ +++ l+    e ++ E+ +v P+ +g   +    +
     CCE30505.1 215 VVRTNFPDIKMKCTVhSRHGSIMVIPREDNmvRLYVQMTSSSGRE-LSdrRTATEQEIQELAKKiLHPYFIEWERVEWySVYPISQGIADSYSLDQ 309
                    555556666655444333344556666655335677777766555.64224677788888888878888888888888789999888766665555 PP

  Lycopene_cycl 258 vlaiGaaaglvh.PaTGYsvarslaeapllasaiaaalresslsarawatlwprerkrqr 316
                     + iG+ a  +h P  G  +  +   a  la  i a+ +  + ++r   + +  erk  +
     CCE30505.1 310 RVFIGGDACHTHsPKAGQGMNMAFTDALNLAWKIHAVEG--GFAHRDLLKTYESERKGVA 367
                    666777777777699998888888888888888877766..6666666666666666555 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.6e-05     0.047       1      37 [.      14      50 ..      14      56 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.6e-05
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVlllekakklgr 37
                 +d++++G+G+ Glm +  +a+ g r+  +++ +++ r
   CCE30505.1 14 YDIVIVGAGPVGLMLSTCLARWGYRIKHIDNRPEPTR 50
                 589**************************99988765 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     4e-05     0.072       2      39 ..      17      54 ..      16      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4e-05
                EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG- CS
      XdhC_C  2 vifGaghvaqalarlaaalgfrvtvvdpreefatkerf 39
                vi+Gag+v+  l +++a+ g+r+  +d+r+e +++ r+
  CCE30505.1 17 VIVGAGPVGLMLSTCLARWGYRIKHIDNRPEPTRTGRA 54
                8*****************************86644444 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.9e-05     0.088       3      33 ..      16      46 ..      14      60 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.9e-05
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S-H CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDide 33
                    i+++G+G vGl+ +++la+ g  +  +D+  
      CCE30505.1 16 IVIVGAGPVGLMLSTCLARWGYRIKHIDNRP 46
                    99************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.37
# Mc/sec: 5183.21
//
Query:       CCE30506.1  [L=640]
Description: related to Ubl-specific protease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-20   73.6   0.1      3e-20   73.0   0.1    1.3  1  Peptidase_C48   Ulp1 protease family, C-terminal catalytic do
  ------ inclusion threshold ------
      0.021   14.7   0.1      0.065   13.1   0.1    1.8  1  Phage_tail_APC  Phage tail assembly chaperone protein


Domain annotation for each model (and alignments):
>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.1   3.4e-24     3e-20       2     205 ..     444     623 ..     443     628 .. 0.79

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 3.4e-24
                    --BHHHHHHHHHHHHHHHHH......CCCTCCCEEE--THHHHHHC..........SS.......TCHCHHHCTTCCCCC..S..-GGG-SEEEEE CS
  Peptidase_C48   2 wlndtvidfylkllaerles......seskaervhflntffvskLtkavkdfkknkskkkfkeskkkdlyngvrrwtrkv..nkedlfdkdiiyiP 89 
                    wlnd++++   + l + + +      ++++ +++  +++ff+++L+                    ++++++++r  r+   +ke l+d+d+i++P
     CCE30506.1 444 WLNDEIVNGSFNWLDQFINMaagikdTKKSTRKCLAMSSFFFKRLQ--------------------EQGVTRTQRTLRRYgvDKENLLDVDTILLP 519
                    666666665555554444434444458889999*************....................8889999999888878999*********** PP

                    EEC.TTEEEEEEEETCCCEEEEE-TTS-SSH.HHHHHHHHHHHHHHHHHCCCCCSTT-.GGGEEEEEEE-----SSCCCHHHHHHHHHHHHHCTHH CS
  Peptidase_C48  90 inedgkHWvlliinlpdktililDSlislhtvkkenrpinnlkpyLleealkkkqkqldltpfeierltkvpqqknsgDCGiyvlkfiellaegap 185
                    i+e  +HW ll+i   ++t+ + DS++ + + +k++++  ++++ L++        q+ + +  +++l++ p q n++DCG++++++  ++a g +
     CCE30506.1 520 ICE-HSHWTLLVIRPSKRTVAHIDSMSATGS-QKYISVGLAWLKDLMDD-------QF-VDSEWKVMLHEAPMQTNGYDCGVHTITNGMCVALGLN 605
                    ***.***************************.77777777666666665.......34.3333456788***********************9988 PP

                    CHHHHHSS.HHHHHHHHHHH CS
  Peptidase_C48 186 qessvtltekdvdsfrkkla 205
                      +s+    +d+++ r ++a
     CCE30506.1 606 PIDSY--VAEDMPRQRLRIA 623
                    77555..4788888877777 PP

>> Phage_tail_APC  Phage tail assembly chaperone protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   7.3e-06     0.065       2      34 ..     374     406 ..     373     413 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.3e-06
                     HHHHHHHHHHHHHTHHHHSTTS---HHHHHHHH CS
  Phage_tail_APC   2 aevRaeRdrrLaasDwvqlpDspldeeerqalk 34 
                     +++R+eRd+rLa++   + pD pl +   +++ 
      CCE30506.1 374 QQIRKERDERLARTGGLRIPDQPLVAPLSSDWL 406
                     68*********************9998888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.37
# Mc/sec: 5127.23
//
Query:       CCE30507.1  [L=319]
Description: related to a-agglutinin core protein AGA1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-08   35.2   0.0    2.3e-08   34.3   0.0    1.4  1  RGS       Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.3e-12   2.3e-08      11     112 ..      85     201 ..      74     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.3e-12
                 HHHHHHHHHHHTTCTHHHHHHHHHHHHHTS..............SHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCSS.STTTTTTHHHH CS
         RGS  11 grslFreFlesefseenlsFwlaveefkka..............keqeelkkkakeIyneylapsspkelnidkklreelekrleke.qpsrklfeeaq 94 
                  +s+F  +l ++++ e l+F l+ +++ ++              +    + +  +++++ y+ p +p+e+n++ ++r++l +  + +  p+++ ++ea 
  CCE30507.1  85 TLSAFMAYLSQNHCMETLEFTLDSQRYAAShnqlsfeesasqrsSAAARVCEWWNKLMQVYIVPCAPREVNLPAQVRDRLLNLPSGAyPPHPDELDEAG 183
                 789**********************************999876544555555599************************9998877779********** PP

                 HHHHHHHHHHHHHHHHTS CS
         RGS  95 eevfellekdsypkFlks 112
                 + ++el++++    Fl+s
  CCE30507.1 184 RIIYELMNDSLLVPFLQS 201
                 ****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2417.04
//
Query:       CCE30508.1  [L=993]
Description: related to phosphatidic acid-preferring phospholipase A1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-23   82.6   0.0      4e-22   79.5   0.0    2.3  1  DDHD      DDHD domain


Domain annotation for each model (and alignments):
>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0   2.3e-26     4e-22       1     219 [.     767     968 ..     767     971 .. 0.76

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 2.3e-26
        DDHD   1 ldFevedfFllGSPlGlflalrglera................ktvkpaldvaqlkrpacqqlyNiFhpaDPvAyRlEPLlepkf.sklkPvsiprykr 82 
                 ++F+++++FllGSP G+fl+l+++  +                + ++  +d  ++ + a++++yN+  + DP+Ay l+  l+p++ + l+   +p++  
  CCE30508.1 767 FEFDTTNLFLLGSPAGFFLLLEQAALIprrgrwksgadtrdilD-KNIVQDAGIFGCLAVDNIYNVLAKEDPIAYLLNGALDPAYaAGLRTAFVPSTSV 864
                 89********************6664477899999998766632.344455999*******************************999*********99 PP

        DDHD  83 rkllhlelkesltsigaalkqkvsglvsslsallnrslelaeeesaslaessksherasesskasqeskaaesstasssaksskaeekvelekvralnw 181
                 +          l+s+ +a++q v gl +s                   a ++k++er s+++  sq++ + ++ t++++a+          +k   ln+
  CCE30508.1 865 SV---------LKSVADAVRQIVPGLSKSS--------------YD--ALKQKDSERPSTARLPSQVELEVHDFTREEIAE----------KKAFLLND 928
                 55.........5566666666544443333..............22..223334444444445555544444444444554..........23489*** PP

        DDHD 182 wgRiDYaLq..egaleaeylsavasHasYWeseDvalFll 219
                 +g+iD+ L+   g+le++yl+++++H+sYW ++D++ +l 
  CCE30508.1 929 NGQIDWFLRsgTGPLEIQYLNMLSAHTSYWVNQDFIRMLC 968
                 *********87888*********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (993 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.41
# Mc/sec: 7195.87
//
Query:       CCE30509.1  [L=714]
Description: probable excision repair protein rhp3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-53  178.7   2.0    2.9e-52  176.8   0.1    2.4  2  DEAD_2        DEAD_2
    6.2e-47  159.7   1.5    1.8e-43  148.4   0.4    2.5  2  HBB           Helical and beta-bridge domain
    5.7e-44  150.3   0.1    1.8e-43  148.6   0.0    1.9  2  Helicase_C_2  Helicase C-terminal domain
  ------ inclusion threshold ------
      0.053   12.9   0.6      0.092   12.1   0.6    1.3  1  UvrD_C        UvrD-like helicase C-terminal domain


Domain annotation for each model (and alignments):
>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.8   0.1   6.6e-56   2.9e-52       6     176 .]       1     180 [.       1     180 [. 0.96
   2 ?    0.8   0.3     0.071   3.2e+02       3      26 ..     184     206 ..     183     221 .. 0.74

  Alignments for each domain:
  == domain 1  score: 176.8 bits;  conditional E-value: 6.6e-56
                 HHHHHHHHHHHHHHHHHCHH....HS---EEEE--CCCC-SCHHCCCHHCCCCHHHHHHHHHCCHHCCH......TTTTTT-SCCCCHHHHHHHHHHC- CS
      DEAD_2   6 hsqleqvvkelkklesykkk....kekvkvviLgSRknlCineevkkekkekavneaCkelkkkkaeek......eekCsffenleelkklkkllleev 94 
                 +s++e++++el++l++y++k    +e+++ ++L+SRknlC++++vk+ek+++ v+++C++l++  ++ek      +  C +++nl +l + ++l++++v
  CCE30509.1   1 MSEIEKALEELRELMKYRTKelgyEEDFRGLGLTSRKNLCLHPSVKREKSGTVVDARCRSLTAGFVKEKkergenVDLCVYHDNL-DLLEPHNLIPNGV 98 
                 699****************889999***************************************99998899999899*****99.777789******* PP

                 --CHHHHHHHHHCT--HHHHHHHHHCCTSEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCCCHHHHHHHCC-EEEECHHH CS
      DEAD_2  95 vdiedlvelgeklklCPYylsrelledadiiilpYqyLldekireslkgislknsivilDEAhNiedvceeaasveiseesl 176
                 +++e + ++ge++k CPY+++r++++ ++++i++Y+yLld+ki+e+++   +k++iv++DEAhNi++vc+ea+s++i+e+sl
  CCE30509.1  99 WTFEGILSYGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSRDFSKDCIVVFDEAHNIDNVCIEALSTDITEDSL 180
                 ************************************************7789**************************9986 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.071
                 ESSHHHHHHHHHHHHHHHHHCHHH CS
      DEAD_2   3 sRThsqleqvvkelkklesykkkk 26 
                 +R  ++leq + e++++ + +  +
  CCE30509.1 184 TRGAHNLEQKITEMRRTDQEQL-Q 206
                 7889999999999999976555.3 PP

>> HBB  Helical and beta-bridge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   0.4     4e-47   1.8e-43       2     190 .]     194     337 ..     193     337 .. 0.99
   2 !    9.8   0.0   0.00013      0.58     118     163 ..     354     400 ..     349     410 .. 0.82

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 4e-47
                 CHCHCCCCHHCCCCCCCHHHHHHHHHCCCCHHHHSTTTECCHCHHHHHCHCHHHCHHHHHHHHHHHHHHHHHHHCCHHCCCTCC-SHHHHHHHHHHHHH CS
         HBB   2 ikeaketdepklqdeysrLvegLreaeeereeeyvleeepilpdeileeavpglirsaehflsllkrlveygkarreekieksesPrsflsrlaeflla 100
                 i e+++td+++lq+ey++L++gLre+e++r+e+ ++ + p lpd++l+ea+pg+ir+aehf+++lkr++ey+k+r+++++++se+P sfl +l+     
  CCE30509.1 194 ITEMRRTDQEQLQNEYQKLINGLRETEQARQEDAFMGS-PALPDDLLQEAIPGNIRRAEHFTAFLKRFIEYLKTRMKVRQVISETPPSFLAHLR----- 286
                 78***********************************9.*******************************************************..... PP

                 HHTS.TTTEEEEEE.STT.EECCCCS-TCCHHHHHHHCHCCCCCCTS-SSHHHHHHHHT....EEE.S..S.GGHCCCCCCCCCSHTCCC CS
         HBB 101 wlssdeedYvrlvskeegesLeavcldPskalrflkerlssllmsgtltpleeysdiiGleaklkkfpspfpkEnlivlfatdVsTkyke 190
                                      e+++++ +k+lrf++erl+sl+++++lt++e+y+++                 +++++fat+V+T++k+
  CCE30509.1 287 ---------------------ENTFIE-KKPLRFCAERLTSLVRTLELTNIEDYQPL-----------------QEVATFATLVATYEKG 337
                 .....................******.*****************************.................*************986 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00013
                 T.EECCCCS-TCCHHHHHHHC.HCCCCCCTS-SSHHHHHHHHT.... CS
         HBB 118 gesLeavcldPskalrflker.lssllmsgtltpleeysdiiGleak 163
                 ++ L+ +cld + a+r++ +r  s++++sgt++ple y +++ + ++
  CCE30509.1 354 NPILHFTCLDAAIAIRPVFDRfYSVIITSGTISPLEIYPKMLDFSTV 400
                 689999****99999998776368999***********999766654 PP

>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.92   4.1e+03      20      58 ..     162     211 ..     145     229 .. 0.50
   2 !  148.6   0.0   4.1e-47   1.8e-43       2     170 ..     449     621 ..     448     622 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.92
  Helicase_C_2  20 klleevverlkeeleskki............eifveekeesrekvleeyke 58 
                   ++ + ++e+l++  +++++            +i +   + ++e++ +ey++
    CCE30509.1 162 NIDNVCIEALSTDITEDSLrratrgahnleqKITEM-RRTDQEQLQNEYQK 211
                   444555555555443333311112221111133333.66666666666666 PP

  == domain 2  score: 148.6 bits;  conditional E-value: 4.1e-47
  Helicase_C_2   2 lellevvpggvlvffpSyklleevverlkeel....eskkieifvee.keesrekvleeykek..kkkgaillavcrGklsEGidfsddllraviiv 91 
                   +e+++++p+g +vffpSy ++e++++ ++        +k + i+ve+ ++++++  le+y+++  +++gaill+v+rGk+sEGidf  +++r vi++
    CCE30509.1 449 IEFSKITPDGLVVFFPSYLYMESIISMWQGMSildeVWKYKLILVETpDAQETSLALETYRTAccNGRGAILLCVARGKVSEGIDFDHQYGRTVICI 545
                   68899************************966344344445777776688999999******667******************************** PP

  Helicase_C_2  92 glPfpnpkdpeveakreyldekgkknsgkewylpealravnQaiGRliRhkdDygaivllDeRfakeeireklpkwlre 170
                   g+Pf+ +++  ++a+ e+l+e+ +  + +e+   +a+r   Q++GR++R kdDyg++vl D+Rf+k++  ++lpkw+++
    CCE30509.1 546 GVPFQYTESRILKARLEFLRETYR-IKENEFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFQKKR--NQLPKWINQ 621
                   ************************.9****************************************98..88****986 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   2.1e-05     0.092     135     273 ..     167     330 ..     158     352 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.1e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 135 ilkrlvlgigkatveriseelkklglsltDfikedtleygeeFieliraleeknl..............elllkkiektaeerqalvskyadlfkelae 219
                  ++ l ++i++++++r  +  ++l  ++t++ ++d+ ++++e+ +li+ l e ++                ll++  + + +r ++++++ + f e+ +
  CCE30509.1 167 CIEALSTDITEDSLRRATRGAHNLEQKITEMRRTDQEQLQNEYQKLINGLRETEQarqedafmgspalpDDLLQEAIPGNIRRAEHFTAFLKRFIEYLK 265
                 5778899*********************************************9999*************558889999999***************999 PP

                 xxxxxxxxxxxxx.............xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 220 klaelkekseskr.............kkee...klenlreLysllkelekkeeeeeveeklneileiatL 273
                    ++++  ++               +k+      e+l +L+++l+ ++++++++     l+e+ + atL
  CCE30509.1 266 TRMKVRQVISETPpsflahlrentfiEKKPlrfCAERLTSLVRTLELTNIEDYQP-----LQEVATFATL 330
                 9999999988888899999999998744336677788888888888888855554.....4555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 5186.26
//
Query:       CCE30510.1  [L=199]
Description: uncharacterized protein CPUR_04358 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.065   13.0   0.0       0.16   11.6   0.0    1.6  2  Hira      TUP1-like enhancer of split


Domain annotation for each model (and alignments):
>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.18   3.2e+03     139     139 ..      79      79 ..      44     116 .. 0.48
   2 ?   11.6   0.0   9.1e-06      0.16      14      40 ..     160     186 ..     158     189 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.18
        Hira 139 r 139
                 +
  CCE30510.1  79 E 79 
                 1 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 9.1e-06
        Hira  14 asfLessgsyLlavtsvgllyvWnvkk 40 
                 ++ ++ss+  +++vts+g++yv+n++ 
  CCE30510.1 160 VVAMSSSSPQVMVVTSDGSFYVFNIDM 186
                 67899999****************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1588.49
//
Query:       CCE30511.1  [L=494]
Description: related to NADPH:adrenodoxin oxidoreductase precursor, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-09   35.6   0.0    5.5e-07   29.1   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.077   13.2   0.0       0.18   12.1   0.0    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   6.1e-11   5.5e-07       2     162 ..      22     193 ..      21     236 .. 0.64
   2 !    4.4   0.0    0.0021        19     220     265 ..     327     373 ..     307     411 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 6.1e-11
                  SEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH....HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECT CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvaedaeias....evvkklnqgielllgeevvkidpgkkkvklekkkeg 93 
                  +++++G+GpAG+ +a ++        v ++ +   +++g  + + ++   +e +e ++      + ++  ++ +  +    +   +++ vkl+ +   
   CCE30511.1  22 RLAIVGSGPAGFYTAYRVISriPLTHVDMF-ESLPVPYG-LVRHGVAPDHPEVKEKFEqiasSPTFRFFGNVSVGQK----ASHSQQGSVKLQSLL-- 111
                  789************999984446677777.33334443.5555566666666655554445555555555555555....333556678886555.. PP

                  CEEEEEESEEEE---E.EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T...........SEEEEES-SHHHHHHHHHH.......H CS
                  xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxx.......x RF
  Pyr_redox_2  94 deekiaydklvlAtGs.sprdlgipGvaenvgklvrtldsaealklkllp...........krivvvGgGyiGvElAaal.......a 162
                        yd ++lA G+ + + lgipG+   + +++++ ++  ++   l +           +++vv+G G++++++A  l       +
   CCE30511.1 112 ----RHYDCVLLAYGAcEDKELGIPGE--LALEGIHSARQFVGWYNGLPEdssldplldkaEDAVVIGHGNVALDVARILledvdvlR 193
                  ....479********669*********..3333333444444444444446666777777999**************99633333331 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0021
                  ETTSCE..EEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE--TTS.B CS
                  xxxxxx..xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.x RF
  Pyr_redox_2 220 ledgee..idadlvvvavGvrpstelle.eklglelderggivvdefl.r 265
                  +++  +  ++ d v+ +vG++  +   e  + g+e +e++g+v+++ l r
   CCE30511.1 327 TGQ--TvhLPSDIVFRSVGYKSAPLP-EfSETGIEFNETRGVVMNDGLgR 373
                  334..33599***********99855.679*************9998753 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     2e-05      0.18       1      31 [.      25      57 ..      25      76 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2e-05
                   EE--SHHHHHHHHHHHCC.TE.EEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gf.dvlllekrdrl 31
                   IvG+G +G ++Ay+   +  + +v+ +e+ + +
     CCE30511.1 25 IVGSGPAGFYTAYRVISRiPLtHVDMFESLPVP 57
                   9*************7655555589999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3822.20
//
Query:       CCE30512.1  [L=346]
Description: probable electron transfer flavoprotein alpha chain precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-39  134.0   0.2    7.9e-39  133.4   0.2    1.3  1  ETF        Electron transfer flavoprotein domain
    1.1e-33  115.1   0.5    2.5e-33  113.9   0.5    1.6  1  ETF_alpha  Electron transfer flavoprotein FAD-binding domain


Domain annotation for each model (and alignments):
>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.4   0.2   8.9e-43   7.9e-39       3     164 ..      36     199 ..      34     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 133.4 bits;  conditional E-value: 8.9e-43
                 EEE-EC.CCCE-HHHHHHHHHHHHHHHHHT--EEEEEEES....S-CHHHHHHCT-SEEEEEE-GGGSS--CCHHHHHHHHHHHHC--SEEEEESSCCH CS
         ETF   3 vlaehgvdgklnpvdlealeaArrlkekaggevtavvvGppeaeealrealaamGadkvilvddpalagydaeatakalaalikkedpdlvlagataig 101
                  + e++ dg+l + +l+a +aA+rl    gg+++++v+G++ ++ + +ea++  G+d++i v+++ ++  ++e  a+++++ ikk ++++v+ g++++g
  CCE30512.1  36 AILEQR-DGQLLKGSLSAFTAAKRL----GGTIHGFVAGTNVSAAS-EEAAKVDGVDQIIKVENELYEKGLPEVFAPLVVENIKKGNYTHVIGGHSSFG 128
                 688998.******************....9**********666555.999999********************************************** PP

                 HHHHHHHHHHCT-EEEEEESEEEEETCCEEEEEECCCCTEEEEEE-TSSSEEEEE-TTSS--...........- CS
         ETF 102 kqvaprlAalLgvplitdvteleveggkltvtRpieggnglaevveadlpavltvrpgafep...........a 164
                 k ++pr+AalL+ ++++dvt +e++ +  t++R+i++gn++a+v+++d ++++t+r +af p           +
  CCE30512.1 129 KSMLPRVAALLDSQQVSDVTTIEDD-K--TFVRSIYAGNAIATVESSDSIKIITIRGTAFAPdtstsgssqivE 199
                 ************************9.8..*********************************433333333333 PP

>> ETF_alpha  Electron transfer flavoprotein FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   0.5   2.8e-37   2.5e-33       2      84 .]     223     306 ..     222     306 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 2.8e-37
                 -TTT-S-EEEE-GGGSSGGGHH.HHHHHHHHHT-EEEE-HHHHTTTSS-CCCB-SSSS-----S-EEEES----HHHHGGGTT- CS
   ETF_alpha   2 dLeeakvvvsgGrGlkskenle.lleelaealgaavgasRavvdagwipeerqvGqtGktvaPklyiavGisGaiqhlaGmkes 84 
                 dL++a+ vvsgGrGlkske++e ++  la+algaavgasRa+vd+g+++++ qvGqtGk+vaP ly+avGisGaiqhlaGmk+s
  CCE30512.1 223 DLATASKVVSGGRGLKSKEQFEdVILPLADALGAAVGASRAAVDNGYADNSLQVGQTGKVVAPGLYLAVGISGAIQHLAGMKDS 306
                 899******************879**********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2449.72
//
Query:       CCE30513.1  [L=683]
Description: related to nucleosome remodeling complex subunit RSC8 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-30  102.8   1.4    1.5e-29  101.8   1.4    1.5  1  SWIRM-assoc_1    SWIRM-associated region 1
    9.9e-21   73.9   0.1    2.5e-20   72.6   0.1    1.7  1  SWIRM            SWIRM domain
    7.9e-10   38.8   0.0    1.8e-09   37.7   0.0    1.5  1  Myb_DNA-binding  Myb-like DNA-binding domain
      6e-05   23.2   0.2    0.00012   22.2   0.2    1.5  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.012   15.4   5.1      0.028   14.2   5.1    1.6  1  ZZ               Zinc finger, ZZ type
       0.19   12.0   0.0        0.4   10.9   0.0    1.5  1  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
       0.23   11.5   1.9        0.6   10.1   1.9    1.7  1  STG              Simian taste bud-specific gene product famil


Domain annotation for each model (and alignments):
>> SWIRM-assoc_1  SWIRM-associated region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   1.4   5.8e-33   1.5e-29       1      83 [.     549     631 ..     549     632 .. 0.96

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 5.8e-33
  SWIRM-assoc_1   1 siALaaaAakAkvlasqeereiqrlvaqlvetqlkKlelKLkqfeelEklleaerrelekqrqqLlleRlalkkevlkvaekl 83 
                    si+La+++a+A+ +as+eere++rlv++++++ l+KlelKLk+f+e+E +l+aerrele+ rqqLll+Rla+k++v k++++l
     CCE30513.1 549 SIPLASIGARAAGFASHEEREMTRLVSAATNIMLQKLELKLKCFSEIEGILQAERRELERGRQQLLLDRLAFKRRVGKIMDNL 631
                    589************************************************************************99988765 PP

>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.1   9.8e-24   2.5e-20       1      73 [.     133     202 ..     133     205 .. 0.94

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 9.8e-24
       SWIRM   1 ps.sewFdpdslhpiEkellselfngk..dktpeeYlkiRnkiialyrenpkeyltvteaqkalkrrrltgidvnl 73 
                 ps s+wFd++s+h+iE+++++e+fn +  +ktp++Y+++R+++i++yr np eyltvt++     rr+l+g dv++
  CCE30513.1 133 PSySTWFDMNSIHDIERKAMAEFFNTRnrSKTPAVYKDYRDFMINTYRLNPVEYLTVTAC-----RRNLAG-DVDA 202
                 67799*******************998889******************************.....9***99.9976 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   6.9e-13   1.8e-09       3      45 ..     375     417 ..     374     417 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 6.9e-13
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrny 45 
                      +W+  E ++Lle+++++ ++W +Iae++g+Rt+++c + ++++
       CCE30513.1 375 PWSDSETLRLLEGLERFDDDWGEIAEHVGTRTREECVLQFLQL 417
                      7*************************************99975 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.2   4.8e-08   0.00012       1      43 [.     376     417 ..     376     428 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4.8e-08
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkL 43 
                     W++ E+ +Ll++ e++ +dW +Iae+ + Rt ++c   +++ L
      CCE30513.1 376 WSDSETLRLLEGLERFDDDWGEIAEHVGTRTREECVLQFLQ-L 417
                     ***************************99********9998.6 PP

>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   5.1   1.1e-05     0.028       5      44 ..     310     354 ..     308     355 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                 EE-TTT-S..EESSEEEESSSS.....S-EE-HHHHHH..H---SS CS
          ZZ   5 ytCdgCseapligvRyhclrcs.....dYDLCqsCfst.hkagkhk 44 
                   C++C++++  +v yh+ + +      YD C +Cf + +   +h 
  CCE30513.1 310 INCHQCGNDC-TRVYYHSSQTDsspqaKYDVCPNCFMEgRLPSNHT 354
                 68******65.59*****9987344446*********999888885 PP

>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016       0.4      14      54 ..     360     401 ..     351     419 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
  SANT_DAMP1_like  14 eytdeeYeellkeed.WtkeetdyLfdlckeydlrfvviaDr 54 
                      + ++ +Y++ l ++  W+ +et  L++ ++++d  +  ia++
       CCE30513.1 360 KIENPTYTSSLDRDApWSDSETLRLLEGLERFDDDWGEIAEH 401
                      6778899999998756********************988876 PP

>> STG  Simian taste bud-specific gene product family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.9   0.00023       0.6       6     118 ..      20     129 ..      16     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00023
         STG   6 PllgqpsltgksnsehPqpkldpgsndlar.aplklnaspsdgfqpaggsgvqkwppsegLpsmdsWpsedpWqmlaaavedhlgevlpeelsyLssav 103
                 P l qpsl ++   + P+ +  p ++ la  ++lk++    +    a ++ v + p+s  + s+d+   ++p +++   ve   g++ pe +   s+ +
  CCE30513.1  20 PALVQPSLQRE---GLPEGTDVPMPDALAGdTSLKPDSVTIKAGLVADAAHVSNAPSSAAV-SADAEMGDAPIEVMQDKVESAEGDAAPETKEKTSKET 114
                 66777777654...789999999999999735799999999999999******99999988.99*********************************99 PP

         STG 104 alplgsgllpagssa 118
                 a +  ++ l +++ a
  CCE30513.1 115 AESAAREHLISQTHA 129
                 999999988877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4979.07
//
Query:       CCE30514.1  [L=891]
Description: probable subunit of pre-replication complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-98  327.0   0.2    6.3e-98  326.3   0.2    1.3  1  MCM              MCM P-loop domain
    1.4e-31  108.9   0.1    2.6e-31  108.1   0.1    1.4  1  MCM_OB           MCM OB domain
    3.8e-24   84.9   1.6    3.2e-23   82.0   0.5    2.4  2  MCM_lid          MCM AAA-lid domain
    2.1e-09   37.9   0.0    5.1e-09   36.6   0.0    1.6  1  MCM_N            MCM N-terminal domain
    3.3e-07   29.9   0.0    4.2e-06   26.3   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0039   17.1   0.0     0.0091   15.9   0.0    1.7  1  AAA_3            ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.035   13.8   0.0    1.6  1  Sigma54_activat  Sigma-54 interaction domain
      0.098   12.6   0.0       0.24   11.4   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.3   0.2  2.8e-101   6.3e-98       2     224 .]     289     511 ..     288     511 .. 0.99

  Alignments for each domain:
  == domain 1  score: 326.3 bits;  conditional E-value: 2.8e-101
                 HHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSE CS
         MCM   2 veeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaa 100
                 +++i+++ak+k+++e l++s+apsiygh+++kka+ll+l+gg++k+le++t+lrgdin+l+vgdp+taKsqlL++v ++ap a+ t+g+gss++gLtaa
  CCE30514.1 289 IRNINKVAKKKNLLELLSQSLAPSIYGHDHIKKAVLLMLLGGMEKNLENGTHLRGDINILMVGDPSTAKSQLLRFVLNTAPLAIATTGRGSSGVGLTAA 387
                 689************************************************************************************************ PP

                 EEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSS CS
         MCM 101 vvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFD 199
                 v+ d+etge  leaGa+v+ad+Gv+ciDefdkm++ dr+a+hE+mEqqt++iaKaGi+++Lnar+sv+aAanp++g+yd++k  ++ni l+++lLsrFD
  CCE30514.1 388 VTTDKETGERRLEAGAMVMADRGVVCIDEFDKMSDVDRVAIHEVMEQQTVTIAKAGIHTSLNARCSVVAAANPIFGQYDPHKDPHKNIALPDSLLSRFD 486
                 *************************************************************************************************** PP

                 EEEEE-SSTTHHHHHHHHHHHHHHH CS
         MCM 200 lifvllDkvdeekDeelaehivslh 224
                 l+fv+ D++++++D++++ehi+++h
  CCE30514.1 487 LLFVVTDDIEDTRDRQVSEHILRMH 511
                 **********************998 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.1   1.1e-34   2.6e-31       3     124 ..     117     246 ..     114     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 1.1e-34
                 GG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEES---.............-SB-..TTT-HHH-EEE-GGGSEEEEEEEEEEE----- CS
      MCM_OB   3 RdlrsehigklvkveGivtrasevkpklkkavfeckkcgktvevelee.............PrkCeekeCeskdpfkletekskfvdfqklklQEspee 88 
                 R+l+s+h++++v++eGivtr+s ++pk++++v+  +k +k +  e+++             Pr+      ++ +p++ e   ++f+d+q++++QE+pe+
  CCE30514.1 117 RTLSSQHLNHMVSLEGIVTRCSLIRPKVVRSVHFNEKRKKFQFREYQDqtmtngvttssvyPRED-----DEGNPLVTEYGFCTFRDHQTVSIQEMPER 210
                 9********************************99999985555666666667777777777732.....22458888888****************** PP

                 --------EEEEEEEGGGTT---TT-EEEEEEEEEE CS
      MCM_OB  89 vpaGelPrslevileddlvdkvkPGdrvevtGiyra 124
                 +paG+lPr +++il+ddlvd+vkPGdrv+++Gi+r+
  CCE30514.1 211 APAGQLPRGVDIILDDDLVDRVKPGDRVQIVGIFRT 246
                 **********************************97 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.5   1.4e-26   3.2e-23       2      83 ..     579     661 ..     578     665 .. 0.93
   2 ?    1.2   0.0      0.22     5e+02      47      64 ..     708     725 ..     695     737 .. 0.80

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 1.4e-26
                 HHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHH.TSSTSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHH CS
     MCM_lid   2 llrkYiayarekikPklseeakeklseaYvelRkee.edskrksipitvRqLesliRLseAlAklrlsevvteedveeairll 83 
                 +++kYi+ya++++kP+l+++a++ ++++Yv lR++e e+++r++ p tvR+Le++iRL++A+Ak rls+ v+e d+  a  +l
  CCE30514.1 579 FMKKYIQYAKTRVKPVLTQDASDRIADIYVGLRNDEmEGNQRRTSPLTVRTLETIIRLATAHAKARLSSRVEEPDAVAAEAIL 661
                 69*********************************9544599*********************************99887776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.22
                 --HHHHHHHHHHHHHHHH CS
     MCM_lid  47 itvRqLesliRLseAlAk 64 
                   +R++ +  RLs+  A+
  CCE30514.1 708 SGARTVRATTRLSQTTAR 725
                 56899***********99 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   2.3e-12   5.1e-09       3      86 ..      17      94 ..      15     158 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2.3e-12
       MCM_N  3 kFedFLeefkddsededgekkYrdqlqemaerekttLevdlddLaafdeeLaeailenpkeylplleealkevvkklepsykdd 86
                + edFL+        +   + Yr+ +  m+++++++L+vdld +++++++La+ il++p ++  +++ alk++++++ ++  d+
  CCE30514.1 17 QAEDFLDPS------DPHARSYRSDIILMLQKNQRRLTVDLDLVRDHSSDLAKGILDEPFDFSLAFNHALKKIIETIPQARPDQ 94
                567888855......45689******************************************************8887765554 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.14   3.1e+02      21      40 ..     343     362 ..     338     372 .. 0.84
   2 !   26.3   0.0   1.9e-09   4.2e-06      93     160 ..     395     462 ..     389     489 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
  Mg_chelatase  21 GgHnlllvGppGsGKtmlak 40 
                   G  n+l+vG p + K+ l +
    CCE30514.1 343 GDINILMVGDPSTAKSQLLR 362
                   7889************9876 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 1.9e-09
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcp 160
                   g ++ + G++ +a +Gv+ +DE+ +++     ++ e +e+++vti++a  +++  ar+ +vaa+Np  
    CCE30514.1 395 GERRLEAGAMVMADRGVVCIDEFDKMSDVDRVAIHEVMEQQTVTIAKAGIHTSLNARCSVVAAANPIF 462
                   5668899*********************9999**********************************64 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.1e-06    0.0091      44     113 ..     387     461 ..     347     487 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.1e-06
       AAA_3  44 tevfeekekefefkkGpvfan...llladeinrappktqsalleameerqvtvege..thklpepflvlatqnPi 113
                 +   ++++ e ++++G++++    ++  de ++ +   + a+ e+me+++vt++++   ++l+    v+a+ nPi
  CCE30514.1 387 AVTTDKETGERRLEAGAMVMAdrgVVCIDEFDKMSDVDRVAIHEVMEQQTVTIAKAgiHTSLNARCSVVAAANPI 461
                 45567777888889998664224499**************************9875226789************9 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.6e-05     0.035      79     142 ..     394     459 ..     391     465 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
                      TTTSS-BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEE..ESBTSSSEEE--EEEEEEES CS
  Sigma54_activat  79 tGAekekkGlfekadgGtlfLDeigelplelQekLlrvlqegev..ervGsskeikvdvriiaatn 142
                      tG ++ ++G++  ad G++ +De  +++    + + +v+++++v   + G +++ ++ + ++aa+n
       CCE30514.1 394 TGERRLEAGAMVMADRGVVCIDEFDKMSDVDRVAIHEVMEQQTVtiAKAGIHTSLNARCSVVAAAN 459
                      67778889*******************************9997522699***************97 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.24       1     123 [.     346     461 ..     346     475 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllle 97 
                 ++l+vG+p t+Ks+l + ++   ++++ +    r+ +   l+  + ++   g+++l+ +++v  +    ++++DE++++++    + + ++e++++ ++
  CCE30514.1 346 NILMVGDPSTAKSQLLRFVLN--TAPLAIATTGRGSSGVGLTAAVTTDkeTGERRLEAGAMV--MADRGVVCIDEFDKMSDVDRVAIHEVMEQQTVTIA 440
                 5899********999776554..566666666677777777777776666666667888888..7788999*********99999************99 PP

                 -SSSEEE---......-EEEEEESS- CS
       AAA_5  98 eggelvkaknddllerfrviatanpl 123
                 + g  ++ ++       +v+a+anp 
  CCE30514.1 441 KAGIHTSLNAR-----CSVVAAANPI 461
                 99999988885.....9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6188.31
//
Query:       CCE30515.1  [L=391]
Description: related to carbohydrate kinase MAK32 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-14   52.4   0.1    3.7e-08   33.0   0.4    2.1  2  PfkB      pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.4e-07    0.0024     163     246 ..     166     258 ..      78     262 .. 0.80
   2 !   33.0   0.4   2.1e-12   3.7e-08     248     294 ..     314     360 ..     286     365 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.4e-07
                 EEECESSSHHHHHHHHHHHCTESEEEEEHHHHHHHHTSCT..........HSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE..TTEEEEEEE. CS
        PfkB 163 pnlldplgaqfkeallellaladllkpneeElealtgekl..........edieealaalhklkakgaktvvvtlGkeGalvve..kdgelkvpav 246
                 p l+ +++   ++ + ++l+l+d+  pn++El+ l+g ++           +ie a ++l + ++ +   +vv   ++G+++++  +++  +++ +
  CCE30515.1 166 PDLCLSKE---LSNCTNALRLVDICSPNHSELAGLMGDDGldpetgevsaRSIERACEQLLASVPLQSYALVVRAAERGCYIAKngGKKCRQISGI 258
                 55555555...6789999*****************************66666666666666666666699*************8655555555555 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 2.1e-12
                 SSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSS CS
        PfkB 248 kvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkg 294
                   kvvD tG G +f gg+ +al++g++le+a++ ++ +A++++++ g
  CCE30515.1 314 NLKVVDATGGGNAFLGGLSVALARGEKLEDAVAWGSVAASFAIEQVG 360
                 579*****************************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3017.93
//
Query:       CCE30516.1  [L=268]
Description: related to 26S proteasome subunit RPN4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.12   13.2   0.6       0.24   12.3   0.6    1.4  1  DUF3306      Protein of unknown function (DUF3306)
       0.12   12.4   0.0       0.25   11.4   0.0    1.4  1  tRNA-Thr_ED  Archaea-specific editing domain of threonyl-tRNA


Domain annotation for each model (and alignments):
>> DUF3306  Protein of unknown function (DUF3306)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   2.7e-05      0.24       4      84 ..     168     242 ..     167     248 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.7e-05
     DUF3306   4 sRWsrRKsearapaeapepaqseeeaaeeeeaaeaeesveaaapeaeeaeeaeaeeeletlpdvealtaesdfaaFlakgV 84 
                 +RWs++ ++ + p+  ++     ++a++e+ ++ + +++  + +eae+ e a +  ++++ +d+ealt++  +++++  g+
  CCE30516.1 168 QRWSQKEQNSQ-PQVVHAD----STAEPETPKTISPKDAVLEFNEAEP-EWALPLFPQNSSNDMEALTKKHRVRDLMVLGI 242
                 7****999999.4444443....3444444444444455555555554.77889999999*********999999998776 PP

>> tRNA-Thr_ED  Archaea-specific editing domain of threonyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.8e-05      0.25      21      98 ..     186     261 ..     176     266 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.8e-05
                  SS-.SS---EEEESSEEEEEEE-BTT--H...HHHHHHHHHHHHHHHHHT-SEEEEEE-STS-SSB--HHHHHHHHHH CS
  tRNA-Thr_ED  21 keaeeeeekegrleealvvFiavEkeDeeekekvvekavkeikkvakkvkakkvvlypyaHLssslaspevakeilkk 98 
                  ++ae+e++k+ + ++a++ F + E e       + ++  ++++ ++kk  ++++++    HL+++l++p+   +i+++
   CCE30516.1 186 STAEPETPKTISPKDAVLEFNEAEPEWAL--PLFPQNSSNDMEALTKKHRVRDLMVLGICHLAQNLGRPNNINSIIQA 261
                  46778889999999999999998888777..67889999*******************************99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2035.04
//
Query:       CCE30517.1  [L=524]
Description: related to adenylate cyclase-associated protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.4e-113  378.3   3.1   4.7e-113  377.8   3.1    1.2  1  CAP_N          Adenylate cyclase associated (CAP) N terminal
    5.5e-55  185.3   0.4    8.7e-55  184.6   0.4    1.3  1  CAP_C          Adenylate cyclase associated (CAP) C terminal
  ------ inclusion threshold ------
       0.15   11.8   0.3        0.5   10.1   0.2    1.9  2  TBCC           Tubulin binding cofactor C
       0.94    9.5   8.0        1.1    9.3   4.2    2.3  2  PRIMA1         Proline-rich membrane anchor 1
        8.1    6.5   7.7        6.5    6.8   5.7    1.8  1  Mito_fiss_reg  Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.8   3.1  1.3e-116  4.7e-113       1     315 [.      11     338 ..      11     340 .. 0.85

  Alignments for each domain:
  == domain 1  score: 377.8 bits;  conditional E-value: 1.3e-116
                 XXXXXXXXXXXXXXXXX.....................XXXXXXXXXXXXXXXXXXXXXXXSXH............HHHHHHHHHHHHHHHHHHHHHHH CS
       CAP_N   1 ttlikRLEaatsrLEdiais...........essssasskasssssaaaaaaaaaakaaaaaaaa...........ksveaFdelisgsvkefvelskk 77 
                 ttlikRLEaatsrLEdia+s           ++ + a++++++ +++++ a++           +           +++e+Fd+lis sv ++ +ls++
  CCE30517.1  11 TTLIKRLEAATSRLEDIATStevvndvtisgQNVEFAAEDSEAPTTSSQIASS-----------KlspgptieqvpEAIEEFDQLISMSVGNYAKLSNE 98 
                 69***************999777766554432222222222222222222222...........123344455667*********************** PP

                 H-HHHHHHHHHHHHHHHHHHHHHHHHHHBE---.HHHHHHHCHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHCGGGGGGGGG--S-HHHHHHHHHHHHH CS
       CAP_N  78 iggevaeqaelvkkafeaqrkfllvaskakkPadseelqelLkplseaiqkvqeireknrksklfnhLsavsegipalgWvavepkPapyvkemkdaaq 176
                 +gg+va+q+++v ++f++qrkfll+++ka kPa  +++q+lLkp+++a+ +v+e++++nr+++++++Lsav++gi++l+W++++++P+++v+ ++ +aq
  CCE30517.1  99 LGGVVAKQSAKVLEGFQEQRKFLLITTKAVKPA-ATAYQNLLKPINDALLAVTELKDSNRQDPMYTQLSAVADGIMMLAWITLDSRPYKHVESSLSSAQ 196
                 ********************************8.***************************************************************** PP

                 HHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHSTTS----TTSBE..........SSC--XXXXXXX.....XXXXXXXX.....XXXXXXXX CS
       CAP_N 177 FYtNrVlkeykekdkkhveWvksflqilkeLqaYvkeyhttGltWnkkGkdaeealk...aaaaaasaaaagg.pppPpPpPppasvfeeesaaasasa 271
                 F++NrVlke kek++k+veW++sf+qi+++L++Yvk+++++G++Wn++G++a+++++   ++a+aa++ a+g+ + pPpPpP p++v + ++ ++++  
  CCE30517.1 197 FFGNRVLKEQKEKNPKQVEWIQSFYQIFRDLAEYVKQNFPSGIAWNATGHSAQDVVNslfQTAPAAPSVASGNtALPPPPPPGPPPVLNVKT-KSTSMM 294
                 ********************************************************999966666666666664555555554666665555.789999 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXX CS
       CAP_N 272 aaggmsavFaeLnkGeaiTkgLkkVdksqkThKnPslrasstvp 315
                 +++g++avF+eLnkG+++TkgL+kVdks++ThKnPslra+stv 
  CCE30517.1 295 PSSGLNAVFSELNKGSEVTKGLRKVDKSEMTHKNPSLRAGSTVG 338
                 9****************************************986 PP

>> CAP_C  Adenylate cyclase associated (CAP) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.6   0.4   2.4e-58   8.7e-55       1     157 []     364     522 ..     364     522 .. 0.96

  Alignments for each domain:
  == domain 1  score: 184.6 bits;  conditional E-value: 2.4e-58
       CAP_C   1 kppklelegnkwlvenqe.nnkeieieetelkqsvyifkCknstiqikgKvnaitldnckkvsvvvdsvvSsvevincksvkvqvlgkvptisiDktdg 98 
                 kp+k+el+gnkw++en+e + +++eie t+l+qsv+i++C+n+ti +kgK+n++t++n+ ++s+++d++vS+v+v++++++++qv g++pt+++D++dg
  CCE30517.1 364 KPAKMELDGNKWTIENYEkGPDPVEIE-TTLSQSVLISRCNNTTIVLKGKANQVTVENSARLSLIIDTLVSTVDVVKAQNFALQVIGTLPTVMLDQVDG 461
                 79***************73556****8.*********************************************************************** PP

       CAP_C  99 vqiyLskesldteivtsksseinvsvpkeedgdykElpipeqfktki..kkgklvtevveh 157
                 +q+y+skes+ t+i+tskss in+++ ++ d+dy+E+p+p+q+++++   k++lv+e+v h
  CCE30517.1 462 GQVYFSKESIGTKIFTSKSSGINLNIISGPDEDYREVPLPSQICSHYdgTKDELVNEIVGH 522
                 **************************99******************9777789**999865 PP

>> TBCC  Tubulin binding cofactor C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.85   3.1e+03      83     108 ..      42      67 ..      30      74 .. 0.85
   2 ?   10.1   0.2   0.00014       0.5       2      38 ..     395     431 ..     391     464 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.85
                 BSEEEE------TTSHHHHHHHT--S CS
        TBCC  83 kgirfapynlsypeleehlkkagldp 108
                 ++++fa    + p+ + ++++++l+p
  CCE30517.1  42 QNVEFAAEDSEAPTTSSQIASSKLSP 67 
                 68999999999999999999999987 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00014
                 -EEEE-S-BS-EEEE-S--S-EEEES-BS-EEE---- CS
        TBCC   2 ssvkisnlsdctiylldplssvtiddcknctivlgpv 38 
                 +sv is++++ ti+l ++ ++vt+++  +  +++ + 
  CCE30517.1 395 QSVLISRCNNTTIVLKGKANQVTVENSARLSLIIDTL 431
                 4556666666666666666666666665555555444 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.2    0.0003       1.1      27      52 ..     270     295 ..     248     306 .. 0.84
   2 ?    1.2   0.1     0.099   3.6e+02      18      43 ..     339     364 ..     328     378 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0003
      PRIMA1  27 pplpppppppppprllsltaaestvs 52 
                   lpppppp ppp l ++t + s+++
  CCE30517.1 270 TALPPPPPPGPPPVLNVKTKSTSMMP 295
                 5699*********9999988888765 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.099
      PRIMA1  18 qeacqcrrypplpppppppppprlls 43 
                 ++ c  r + p p   p p + rl  
  CCE30517.1 339 DQECSARGKSPAPGKKPKPESMRLKK 364
                 67899999999998888887777754 PP

>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.7    0.0018       6.5     162     216 ..     257     322 ..     239     335 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0018
  Mito_fiss_reg 162 epksssaspslep.ssslppppppppppi............ppespsvldssnsaielikqrrgakkt 216
                    ++  ++a+ps+++  + lpppppp ppp+            +++ + v+++ n+  e+ k  r+  k+
     CCE30517.1 257 QT--APAAPSVASgNTALPPPPPPGPPPVlnvktkstsmmpSSGLNAVFSELNKGSEVTKGLRKVDKS 322
                    22..3333333333455788888888885555555555544556666666666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3889.84
//
Query:       CCE30518.1  [L=609]
Description: probable carnitine O-acetyltransferase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.1e-201  668.8   0.0   8.1e-201  668.7   0.0    1.0  1  Carn_acyltransf  Choline/Carnitine o-acyltransferase


Domain annotation for each model (and alignments):
>> Carn_acyltransf  Choline/Carnitine o-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  668.7   0.0  4.5e-205  8.1e-201       1     587 []      31     595 ..      31     595 .. 0.93

  Alignments for each domain:
  == domain 1  score: 668.7 bits;  conditional E-value: 4.5e-205
                      S-------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHC..THHHHHHHHHHHHHSSHT-STTTHHHHHHHHTTT--S-HHHHTBEEEE-GC CS
  Carn_acyltransf   1 LprLPvPkLedTleryleslkpllseeelekteklveeflk..geGpkLqerLraekekktsknwledwWedyaYleyrdplvlnsnpfllled 92 
                      Lp+LPvP+Le+T++ryl+sl+p+ls+ e++++e++v++f +  g+G+kLq++L+a++e++++knwl+dwW+d+aYl yrdp+v+++++f+ + d
       CCE30518.1  31 LPQLPVPALEETAKRYLKSLHPILSAREYAASEAAVQDFIRpgGVGSKLQHKLVARREDSQTKNWLYDWWNDAAYLAYRDPVVPYVSYFYSHRD 124
                      8*****************************************99*********8776676788***************************6666 PP

                      CCCTSTCHHHHHHHHHHHHHHHHHHHHHHTT-S--TE.EETEE---GGGGGSSSEEEE--SSS-EEEEE--.TSS---EEEEEETTEEEEEECE CS
  Carn_acyltransf  93 dpdpkeknqqlkraAklilsalkfkkllrreelepdvikkgkplcmsqykrlfnttRiPgkekDklvkykk.edkesrhivVlrkgqfYkvdvl 185
                      d++  ++n++ +raA++++++l+fkkl+++++lep+ ++ + p+cm++yk++fn+tR+ ++++D+ vk+   e   ++h + +rk+qf+k+   
       CCE30518.1 125 DQT--RRNPA-TRAAAIASAVLEFKKLVETGTLEPEYMQ-KLPICMDSYKWMFNATRMVARPSDYPVKFPAlE---NKHFIAIRKNQFFKIAHE 211
                      665..88888.*************************654.69**************************98855...9**************964 PP

                      CECTTEE--HHHHHHHHHHHHHHHHCCG.----GGGGGGS-HHHHHHHHHHHCC-TCHHHHHHHHHHCSS-EEEE----SS---HCCHHHHHHC CS
  Carn_acyltransf 186 eddggrllspaelekqleeIlsdsekeesaeepvgvlTtenRdewakareellksekkNkeslelIesalfvvcLDdespededeeelakqllh 279
                         gg++l+++elekq+ ++++ +e    ++++vg+lT++nRd wa+are l ks+++N ++l +I+sa f+vcLDd+sp + +e  +a+q++h
       CCE30518.1 212 --VGGKQLNTSELEKQFVKVYQVAE----RDPAVGALTSQNRDIWADARELLTKSSSQNMNALGAIDSASFIVCLDDASPVTLEE--RAHQYWH 297
                      ..8899***************6543....468********************999888*********************966666..******* PP

                      TTCGC--TTBSEEEEE-TTS-EEEEE-STT--HHHHHHHHHHHHHCCHCTTTT--S----S-SSS....-EEE-----HHHHHHHHHHHHHHHH CS
  Carn_acyltransf 280 gsgtnRWfDKslqlivtknGkaglnfEHswaDgtvvlrlvedvltdsilkeakekneeksssseeslpepeklefkldeelkeaieeaetrldk 373
                      g+g+nRW+DK+lq+iv++nG++g+++EHs++Dgt++ rl++++ + +  k+        +   +++lpep+ l+f+l++ ++++i++a t++++
       CCE30518.1 298 GDGANRWYDKPLQFIVNDNGTSGFMGEHSMMDGTPTHRLNDYINDLIFGKKLDF----FDPVIRSDLPEPQLLRFNLTPPIRAEIDRAVTDFHA 387
                      ******************************************999884443332....33333334788************************* PP

                      HHCCEEEEEEEETS--HHHHCCCT--HHHHHHHHHHHHHHHHHSS---EEEEEE-TTSTT--EEEEE---HHHHHHHHHH.HSSCTHCCHHHHH CS
  Carn_acyltransf 374 lisdldlkvlefkeyGksfikkfklspDafiQmalQlAyyrlygklaatyEsastrkFrhGRtEtirsvteeslafvkam.dskasdeeklell 466
                      +i++++l v  +++yGks+ik+fk+spDa++Qm +QlAyy+++gk ++tyEsa+tr+F+ GRtEt+r+v++es+a++ +m ds++++e k +l+
       CCE30518.1 388 VIKQHELAVQAYQGYGKSLIKQFKCSPDAYVQMLIQLAYYKMFGKNRPTYESATTRRFQLGRTETCRTVSDESVAWCASMlDSSKTNELKVDLF 481
                      ********************************************************************************76688888889*** PP

                      HHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHT--HHSS.-HHHHSHHHHHCT--SEEEEE...SSSEEEES--SSTT-EEEEEEEETC.EEE CS
  Carn_acyltransf 467 rkAvkahskltkeaakGkGvdrHLfaLkllakelesegeelpelFkdplykklnnwrLsTSqlsspalkgfGfgpvvpdGyGigYiikddsisf 560
                      rkAvkah +++ +a++G+GvdrHLf+Lk l++    +gee+p+++kdp+++++++w+LsTSqlss+ ++g+G+++vv+dG+Gi+Y+i+ +si+f
       CCE30518.1 482 RKAVKAHLEYISAASDGNGVDRHLFGLKKLLR----QGEETPAIYKDPAFAYSSSWYLSTSQLSSEFFNGYGWSQVVDDGFGIAYMINANSINF 571
                      ****************************9998....67899***************************************************** PP

                      EEEETCTTS--HHHHHHHHHHHHHHHH CS
  Carn_acyltransf 561 visskkksetsserfaeaLeealedik 587
                      +i sk      s++++ +L+ea+ +++
       CCE30518.1 572 NIVSK---GLGSAHMSYYLNEAAGEMR 595
                      ****6...5699***********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4210.78
//
Query:       CCE30519.1  [L=1571]
Description: probable PENTAFUNCTIONAL AROM POLYPEPTIDE [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.7e-130  433.8   0.0     9e-130  433.1   0.0    1.3  1  EPSP_synthase   EPSP synthase (3-phosphoshikimate 1-carboxyvi
   5.8e-102  340.3   0.1   9.4e-102  339.7   0.1    1.3  1  DHQ_synthase    3-dehydroquinate synthase
    4.7e-56  190.6   0.0    8.2e-56  189.8   0.0    1.4  1  DHquinase_I     Type I 3-dehydroquinase
    2.7e-38  131.6   0.0    9.3e-37  126.6   0.0    2.5  2  SKI             Shikimate kinase
    1.5e-24   86.0   0.0    3.8e-24   84.7   0.0    1.8  1  Shikimate_dh_N  Shikimate dehydrogenase substrate binding dom
      2e-08   34.2   0.0    4.1e-08   33.2   0.0    1.5  1  Fe-ADH_2        Iron-containing alcohol dehydrogenase
    4.4e-05   23.6   0.0    0.00016   21.8   0.0    1.9  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
    0.00012   22.3   0.0       0.14   12.3   0.0    4.1  5  AAA_33          AAA domain
  ------ inclusion threshold ------
      0.023   14.9   0.0      0.065   13.5   0.0    1.8  1  TrkA_N          TrkA-N domain
       0.11   12.8   0.0       0.48   10.7   0.0    2.1  1  AAA_22          AAA domain
       0.15   12.6   0.0       0.34   11.5   0.0    1.6  1  AAA_18          AAA domain


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.1   0.0  5.5e-133    9e-130       6     417 .]     402     830 ..     398     830 .. 0.96

  Alignments for each domain:
  == domain 1  score: 433.1 bits;  conditional E-value: 5.5e-133
                    --EEEEE--B-HHHHHHHHHHHGGGBSSEEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGGGGGHHHHHHH CS
  EPSP_synthase   6 rlegevkvpGsksisnralllAaLaegestitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgnsgtalrlLtal 101
                     l+ +v++pGsksisnral+lAaL++g ++i+nlL+s+D+++ml a+ +Lg++ +++ + +e++ veg+gg+++a+  + l++gn+gta+r+Lt +
     CCE30519.1 402 GLTVTVTPPGSKSISNRALILAALGSGPCRIKNLLHSDDTEYMLSAISQLGGASYSWHDAGEILEVEGKGGNLSAS-RDELYIGNAGTASRFLTTV 496
                    67889**********************************************************************9.7****************** PP

                    HSEES.....SEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEET...SS-BEEEEETSSTTHHHHHHHHHHHTTSBS..EEEEES CS
  EPSP_synthase 102 lalas.....gevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkg...lklkgveikaevsSqqvtsllllaallaeg..ttelee 187
                    lal s     + +vLtG+++++ RPi +l+daLr +G+eie++ +en++pl+v++   ++++ +e++a+vsSq+v+s+l++a+ +a+   t++l++
     CCE30519.1 497 LALCSpirqtCSTVLTGNARMKVRPIGPLVDALRLNGVEIEYLGQENSLPLRVYStagFPGGVIELAATVSSQYVSSILMAAP-YAKRpvTLRLVG 591
                    **97669999********************************************9999*************************.666659999999 PP

                    ..-TTHHHHHHHHHHHHHTT-EEEETTSSEEEEEE--SS..B--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGHHH..HHHHHHHHTTE CS
  EPSP_synthase 188 ..lasepsiddtlkmlkkfgikietsgteesitvkGkek..lpgteyvvegDassAayflvaAaitggevtvenvginslqGdiealdeilekmga 279
                      ++s+p+id+t++m+k+fg+ + +s te  ++  +     +p+ ey++e+DassA+y+l+ Aaitg++ t+ n+g +slqGd+++++++l+ mg+
     CCE30519.1 592 gkPISQPYIDMTISMMKTFGVSVAKSATEADTYHIPLGTytNPS-EYIIESDASSATYPLAVAAITGTTCTIPNIGSSSLQGDARFAIDVLRPMGC 686
                    9***********************************99996777.*************************************************** PP

                    EEEEESTSEEEEEET...TS--BEEEEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEEEEEEEE.... CS
  EPSP_synthase 280 eitqeedasivvgps...glklkdvdietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeeedgliiipaek...q 369
                     ++q e +++v gp     + l  vd+e ++d+++t+ vl a+a+g+t i+gia++rvke+dr+aam ++L+k+G+ ++e++dgl+ii+ +    +
     CCE30519.1 687 SVKQDELSTTVTGPApghLKPLPRVDMEPMTDAFLTASVLGAVANGKTCITGIANQRVKECDRIAAMRNQLAKFGVVCTELDDGLEIIGRSLsdvR 782
                    ***********99998866777889*************************************************************9987778777 PP

                    EB-EEEE-TTSTTTTHHHHHHHHHSBSEEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 370 lkgaevesydDhRiamalalaglvaegeveiddiectdksfpefeekL 417
                      +  +++ydDhR+am+++++++va g ++i++++c+ k++p+++++L
     CCE30519.1 783 AAQEAIDCYDDHRVAMSFSVLSVVAPGATIITERQCVGKTWPGWWDTL 830
                    78889*****************************************87 PP

>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.7   0.1  5.7e-105  9.4e-102       2     261 ..      78     356 ..      77     357 .. 0.98

  Alignments for each domain:
  == domain 1  score: 339.7 bits;  conditional E-value: 5.7e-105
                   EEE-SSGGGCCHHHHHHHHHHHHHTT--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE---SEE CS
  DHQ_synthase   2 lvvpdgeksKsletlekildalleakleRksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafaqPkav 98 
                   +++++ge sKs et ++i d++l+++++R+ ++ialGGGv+gD++G+vAat++RGvrfvqvPttlla+vDss+GgKtai++p gKNl+G+f+qPk +
    CCE30519.1  78 YAIAPGEGSKSRETKAEIEDWMLSQSCTRDIVIIALGGGVIGDMIGYVAATFMRGVRFVQVPTTLLAMVDSSIGGKTAIDTPMGKNLVGSFWQPKRI 174
                   67999******************************************************************************************** PP

                   EEEGGGGGGS-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHC..........TTTHHHHHHHHHHHHHHHHHHHHHCCTTTTGGGGGGTTHHH CS
  DHQ_synthase  99 lidlevLktLperelraGlaEviKyalikdeelfelleenaeallk..........eeeeealeeliarsievkaevveeDekekglralLnlGHti 185
                   ++dl++L+tLp re+++G+aEviK+a+i++e+ f  le+ a+++++          ++ +e l++++  s +vkaevv++De+e glr+lLn+GH+i
    CCE30519.1 175 YVDLAFLQTLPVREFINGMAEVIKTAAIWNEDEFIFLEQYAAEITScirskskdrlASIKEILARIVVGSAKVKAEVVSADEREGGLRNLLNFGHSI 271
                   ******************************************99999*****9999778999*********************************** PP

                   HHHHHHHHTTTTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT...........-HHHHHHHHTTCTTX CS
  DHQ_synthase 186 gHaiEallgyekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkel..........leveellealkkDkkv 261
                   gHaiEa+l++ +llHGeaVaiGm+++ael+++lg+l++++v+rl k+++++glp+sl+++          ++v++ll++++ Dkk+
    CCE30519.1 272 GHAIEAILTP-QLLHGEAVAIGMIKEAELARYLGILRPHAVSRLSKCIASYGLPTSLQDKrvvkltagkrCTVDNLLKKMTVDKKN 356
                   **********.*********************************************************999**************8 PP

>> DHquinase_I  Type I 3-dehydroquinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.8   0.0     5e-59   8.2e-56       3     227 ..    1053    1271 ..    1051    1273 .. 0.91

  Alignments for each domain:
  == domain 1  score: 189.8 bits;  conditional E-value: 5e-59
                   EE--SSHH.HHHHHHHHHTTS-SEEEEEGGG-.TT.THHHHHHHHHHHHHHTTS-EEEE---GGGT-S.SSS-HHHHHHHHHHHHHCT-SEEEEEG CS
  DHquinase_I    3 pitgktle.eilaelesgkekaDlvElRlDllketseaedvseeleelrstsdlpliftlrtkaeggrfkrkseeeylellrtaielgadyvDvEl 97  
                   ++t + ++   +a+++++  ++D+vE+R+Dll++ ++ e+++++++ lr  s+lp+ift+rt ++gg f++++e+ + el+r a++lg++++DvE+
   CCE30519.1 1053 SLTMPRIDdTNVARIQKALVGSDAVEVRIDLLSDWAP-EAITQQISLLRFASQLPIIFTVRTVSQGGGFPDGEEKMRGELYRLALRLGVEFLDVEI 1147
                   677777877789999999889***********77755.***********999******************************************** PP

                   G-.HHGHHHHHHHHHHHTT-EEEEEEEESS----HH..HHHHHHHHHHHTT-SEEEEEE--SSHHHHHHHHHHHHHHHHHT-SS-EEEEE-TTTTG CS
  DHquinase_I   98 teapeeskkrlieekreggtkvIvSyhdfegtpsae..elkallekmqalgaDivKiavmaksieDvlrllsltseakeekdeaplIamamGelGk 191 
                   t+ ++   ++++++k  ++t vI+S+hd++g  s++  +++  ++++ ++g Di+K++  ak+ieD+++l s++ +    ++++plIa++mG+lGk
   CCE30519.1 1148 TSSDD-MLQEIVDSK--RNTLVIASHHDTTGSLSWKnaSWVPSYNRALQYG-DIIKLVGHAKTIEDNFELSSFKATTMM-SQQKPLIAINMGDLGK 1238
                   84344.444899999..9******************999************.*********************832222.468************* PP

                   HHHCHHHHHTB-EEEEESSS-..SSTT-EEHHHHHH CS
  DHquinase_I  192 iSRilgevfGspvtfasleeakasapGqltarelre 227 
                   +SR+l+e++ +pv ++s   + ++apGq++a+elr+
   CCE30519.1 1239 LSRVLNEFL-TPVCHPS--LPFKAAPGQMSAAELRQ 1271
                   *********.*******..7788***********98 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.13     2e+02      49      73 ..      94     118 ..      88     123 .. 0.88
   2 !  126.6   0.0   5.7e-40   9.3e-37       1     137 [.     868    1012 ..     868    1033 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.13
                 HHHHHHHHHHCCCSSEEEEE-TTGG CS
         SKI  49 elEsevlkelleeeglViatGGGav 73 
                 e E  +l + ++++ ++ia+GGG++
  CCE30519.1  94 EIEDWMLSQSCTRDIVIIALGGGVI 118
                 567889999999999********97 PP

  == domain 2  score: 126.6 bits;  conditional E-value: 5.7e-40
                  TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHH.HHHHHHHHHHHHHHHHHHCCCS..SEEEEE-TTGGGSHHHHHHHH....HHSEEEE CS
         SKI    1 mGaGKstvGkllAkklglefiDlDeliekrtgksiaeife.eegeegFrelEsevlkelleee..glViatGGGavlseenrellk....ekgiviy 90  
                  +GaGK+t G+++Ak+l+++f+DlD+++e r g++i++i++  +g++gFr+ E ++l++++++   g+V+++GGG+v+++e+rell+    ++g+vi+
  CCE30519.1  868 RGAGKTTAGHWIAKQLDWKFVDLDKELESRSGMTIPDIINgPRGWDGFRQAELNLLEDVMSKLprGHVVSCGGGIVETAEARELLCtyrdNGGTVIL 964 
                  7***************************************567******************9999******************************** PP

                  EE--HHHHHHHHHHTTSSGGGCSCHHHHHHHHHHH.HHHHHHCCSSCE CS
         SKI   91 LdvsleellerlkadkeRPllqekskeeelleela.ereplyeeaadv 137 
                  ++++l++++e+l++d++RP+++++ ++  ++++ + e +++y  ++ +
  CCE30519.1  965 VHRNLDQVIEYLMRDTTRPAYTTQIRQVYERRQPWyESCSNYLYYSPH 1012
                  ******************************************999877 PP

>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   2.3e-27   3.8e-24       1      83 []    1286    1366 ..    1286    1366 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 2.3e-27
                      EEESS-TT-SHHHHHHHHHHHCTSSEEEEEEE-SCCTHHHHHHHHHHTTESEEEE-TTSCCHHHGGSSEE-HHHHHHT--SEE CS
  Shikimate_dh_N    1 viGnpikhSlSPaihnaafkalglngsyeafeveedelekaveelralglaGlnvTiPfKeaviplldelseeAkaigAvNti 83  
                      ++G+pi++S+SPa+hna+f+++gl+++y++fe++  + e + e l+++ + G++vTiP+K+++ipllde++++A+ igAvNti
      CCE30519.1 1286 LVGSPISQSRSPALHNALFRDAGLPHEYHLFETS--STECLPELLQRETFGGASVTIPLKQDIIPLLDEVTPAAQIIGAVNTI 1366
                      69********************************..88899999999***********************************8 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   2.5e-11   4.1e-08      12     250 .]      34     290 ..      30     290 .. 0.69

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 2.5e-11
    Fe-ADH_2  12 ellkelelkkvllvadentkkaagekveeslkeagikve......vveeveeeadleeveklveal...re.ketdlvvavGgGtiiDiakyvsak..l 98 
                 +ll++ + ++ +l++d+n  +++  + +  ++ ++i +       +++  e++++ e+ +++ + +   +  +++ +++a+GgG+i D+  yv+a+  +
  CCE30519.1  34 DLLSQVRSSTYVLITDTNLHDTYVPSFRTFFEANKIAAGvrlltyAIAPGEGSKSRETKAEIEDWMlsqSCtRDI-VIIALGGGVIGDMIGYVAATfmR 131
                 567777778888888888888888888888877777543222222222234444444444444444221221344.99**************9975337 PP

    Fe-ADH_2  99 nvpyvsvpTaa..SvDGfaspgaslvvdgkkrtvakaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvqeaaek 195
                 +v++v vpT++   vD+      ++ +   k  v +   P  +++Dl +l++ P r    G+++++   ta  + + +  + e++a ++   ++++ + 
  CCE30519.1 132 GVRFVQVPTTLlaMVDSSIGGKTAIDTPMGKNLVGSFWQPKRIYVDLAFLQTLPVREFINGMAEVI--KTAAIWNEDEFIFLEQYAAEITSCIRSKSKD 228
                 99*******953345655555556666644554556778**************************9..5788888888888999999888888888888 PP

    Fe-ADH_2 196 lvedkketealeellealalsgigi..srpa.....SGsEHliSHaldmlalkqalHGeqVG 250
                  +++ ke+ a   + +a + + + +  +r +         H i Ha++++ + q lHGe V+
  CCE30519.1 229 RLASIKEILARIVVGSAKVKAEVVSadEREGglrnlLNFGHSIGHAIEAILTPQLLHGEAVA 290
                 8877666665555555545444444453333455556678***********9*******996 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   9.7e-08   0.00016      11      92 ..    1404    1487 ..    1396    1512 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 9.7e-08
                    TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCG...HHHHHHT-SEEEE-SSSSS-SB-H CS
  Shikimate_DH   11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealklee...lkellaeadvvisataseepilek 92  
                    + + + ++G G + + ++ +L++ g+  ++v++R+ +++k+la+ +  + +++ +++    +++ l++  v+is + + +pi ++
    CCE30519.1 1404 DAESAAVVGSGGTTRAAIYALHSMGFSPILVIGRDEHKVKALASAFPMH-YNIEPVSHqgaVHDGLHSPRVMISTIPADQPIDDR 1487
                    567899****************************************554.66666554222677889999999999998888654 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.9   3.1e+03      18      50 ..     331     363 ..     329     392 .. 0.62
   2 ?    2.2   0.0      0.11   1.8e+02      25     102 ..     685     763 ..     674     771 .. 0.79
   3 !   12.3   0.0   8.7e-05      0.14       2      39 ..     862     899 ..     862     968 .. 0.85
   4 ?   -3.9   0.0       8.6   1.4e+04      85     113 ..    1128    1156 ..    1121    1163 .. 0.80
   5 ?    1.6   0.0      0.17   2.8e+02      89     129 ..    1301    1341 ..    1270    1344 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.9
      AAA_33  18 rllkklgavllssdtlrrrlfgtdqqsktdytr 50 
                 r++k +++ + + d+l+++++++++++ ++ + 
  CCE30519.1 331 RVVKLTAGKRCTVDNLLKKMTVDKKNDGQQKKI 363
                 55544457888999******9977776654433 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.11
      AAA_33  25 avllssdtlrrrlfgtdqqsktdytrvldr..lyqilnelarkalsagrnvildatnlsrrerarflklarrlgvpvriv 102
                 ++ + +d+l+++++g  + +++ ++rv  +  + ++l + +  a + g+++i+   n + +e +r+ ++ ++l  ++ +v
  CCE30519.1 685 GCSVKQDELSTTVTGPAPGHLKPLPRVDMEpmTDAFLTASVLGAVANGKTCITGIANQRVKECDRIAAMRNQLA-KFGVV 763
                 67899**********98888988888654445999******************999999888888877777665.55444 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 8.7e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfg 39 
                 ++++G+ G+GK+t  + ++k+l++ +++ d++++   g
  CCE30519.1 862 IFVIGMRGAGKTTAGHWIAKQLDWKFVDLDKELESRSG 899
                 689*************************9998876555 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 8.6
      AAA_33   85 rarflklarrlgvpvrivvvetdeetlke 113 
                  r ++ +la rlgv+++ v ++++++ l+e
  CCE30519.1 1128 RGELYRLALRLGVEFLDVEITSSDDMLQE 1156
                  66888999999999999999999988877 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.17
      AAA_33   89 lklarrlgvpvrivvvetdeetlkeRlakRaangddrsevp 129 
                   +l+r++g p++ + +et+  ++   l +R+  g++++  p
  CCE30519.1 1301 NALFRDAGLPHEYHLFETSSTECLPELLQRETFGGASVTIP 1341
                  5789********************99999998777666555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     4e-05     0.065       2      82 ..    1409    1495 ..    1408    1533 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4e-05
                  EEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SS.....SHHHHHHHHHH CS
      TrkA_N    2 iiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatg.....ddeanilavll 82  
                  +++G G ++r+ +  L++ g ++++vi +de +v+ l+  + + ++ ++ + +   + g+ + +++i +++     dd +  +a+++
  CCE30519.1 1409 AVVGSGGTTRAAIYALHSmGFSPILVIGRDEHKVKALASAFPMHYNIEPVSHQGAVHDGLHSPRVMISTIPadqpiDDRVQRMALAM 1495
                  79****************66688******************99999999999999999*************6666655444444443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00029      0.48       4      33 ..     858     886 ..     855     938 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00029
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeea 33 
                 t+++++v+G  G+GKTt   ++++qld ++
  CCE30519.1 858 TKKSIFVIGMRGAGKTTAGHWIAKQLD-WK 886
                 7899********************996.44 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00021      0.34       1      64 [.     862     930 ..     862     979 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00021
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe.......aldeskrldedkldklldal 64 
                 I++ G+ G+GKtt ++ ++k l    +  d+ ke +++ + + +        +d +++++ + l+ ++++l
  CCE30519.1 862 IFVIGMRGAGKTTAGHWIAKQL--DWKFVDLDKELESRSGMTIPdiingprGWDGFRQAELNLLEDVMSKL 930
                 99*******************9..77777777777777666666222244444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.44
# Mc/sec: 10689.82
//
Query:       CCE30520.1  [L=90]
Description: uncharacterized protein CPUR_04368 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0026   17.5   0.0     0.0039   16.9   0.0    1.2  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.2e-07    0.0039      82     117 ..       7      40 ..       3      42 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.2e-07
       DDE_3  82 vlilDnasiHkseslrelveeeadrlellylPpySP 117
                 ++  Dna+iH+++ ++e +ee   +++ l +Ppy P
  CCE30520.1   7 IFMHDNAPIHTAKIVKECLEE--LEVTPLEWPPYKP 40 
                 6677*****************..***********88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 706.08
//
Query:       CCE30521.1  [L=586]
Description: related to DNA mismatch repair protein PMS1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-21   76.9   0.3      4e-21   75.3   0.3    1.7  1  MutL_C    MutL C terminal dimerisation domain


Domain annotation for each model (and alignments):
>> MutL_C  MutL C terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.3   2.2e-25     4e-21       5     147 .]     358     520 ..     355     520 .. 0.89

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 2.2e-25
                 EEEEETTTEEEEEE.............TTEEEEEEHHHHHHHHHHHHHHHHCCHSSB-EEEEEEEEEEE--HHHHHHHHHCHHHHHHCT-EEEE..... CS
      MutL_C   5 algqvhgtyilaen.............edglvlvDqhaAherilyeklkeqlkeeelksQpLliPlvlelspeeaalleehkeeLaklGfelee..... 85 
                 ++gq++ ++i+a +             +d+l +vDqha +e++++ekl++++     +sQ+L+ P  l l++ e+++++++  +L+++Gf+++      
  CCE30521.1 358 VVGQFNLGFIIALRprstsifqiandsQDELLIVDQHASDEKFNFEKLQANTVV---QSQRLVHPKPLVLTALEEEIVLQNVRALEANGFQVQVdvtgt 453
                 566777777766666666666666666889*******************98887...9***********************************999999 PP

                 .-STTEEEEEEEECCCTTTSHHHHHHHHHHHHCCCSS....-H-HCCHHHHHHHHCTTSSSSSS--- CS
      MutL_C  86 .fgpnslivravPallrqqnleelirelleelaekgk....esleekleellatmachssvkagrrl 147
                  + + ++++ a P+  + +   +++++l++ la+++        ++ ++++la++ac+ss+++g+ l
  CCE30521.1 454 aPVGSRCQLLALPLSRESTLTVKDLEDLISLLADEPVgsnyIPRPSAVRKMLAMRACRSSIMIGKAL 520
                 99999******************************9997653489*****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4411.21
//
Query:       CCE30522.1  [L=465]
Description: related to U4/U6 small nuclear ribonucleoprotein hPrp3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-67  227.6   1.5    2.8e-67  226.7   1.5    1.4  1  PRP3      pre-mRNA processing factor 3 (PRP3)
    9.1e-46  155.6   0.1    9.1e-46  155.6   0.1    2.1  2  DUF1115   Protein of unknown function (DUF1115)
  ------ inclusion threshold ------
      0.073   12.7   1.8       0.11   12.1   1.8    1.3  1  GET2      GET complex subunit GET2


Domain annotation for each model (and alignments):
>> PRP3  pre-mRNA processing factor 3 (PRP3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.7   1.5   4.7e-71   2.8e-67      11     222 ..      92     297 ..      79     298 .. 0.87

  Alignments for each domain:
  == domain 1  score: 226.7 bits;  conditional E-value: 4.7e-71
        PRP3  11 kvkkrkkralkfvekGkfikqaeqlrekaqleelkkeiaeeakkaglesdlklaekapkkeedevpndvEWWDavllkkkekkealkeeekkkekeeee 109
                   ++r++r l f++kGk+i+qa+++r++a+le++kk+ia++++kag+++dl+++ k++     + p+++EWWD+ l++ +++   ++++e    k + +
  CCE30522.1  92 GSRHRESRPLVFHQKGKYIQQANAIRRQAALEAMKKRIAMQTRKAGINEDLDVE-KNFVI---DSPPNIEWWDEGLVHGTNYGRIETAHEL---KLSGS 183
                 457899*********************************************977.66666...55669*******9987765555443322...22333 PP

        PRP3 110 esklkkitnyveHPvplkppkektkpaakplyLTkkErKklRrqrRkekekekqdkirlGLepppepKvklsNLmrvlgde....avqdPtkvEaeVre 204
                     + it+y++HPv l pp++++ p+akp++LT kE+ k+RrqrR+++ ke+q+kirlGL+p+p+pKvk  NLmrvlgd     av+dPt+vEa+V++
  CCE30522.1 184 ---ESIITEYIQHPVALAPPQDRHIPEAKPMFLTSKEQAKIRRQRRMADLKEMQAKIRLGLVPAPPPKVKKGNLMRVLGDGkfffAVKDPTAVEARVNR 279
                 ...349************************************************************************99655669************* PP

        PRP3 205 qmaeRekkHeerNeeRkl 222
                 ++a+R+++H ++Ne+Rkl
  CCE30522.1 280 EIAQRHQNHVQNNEARKL 297
                 *****************9 PP

>> DUF1115  Protein of unknown function (DUF1115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   1.0      0.36   2.1e+03       7      20 ..     296     309 ..     268     320 .. 0.45
   2 !  155.6   0.1   1.5e-49   9.1e-46       2     146 .]     322     461 ..     321     461 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.36
     DUF1115   7 sLsnpkhrfkvdkn 20 
                 +Ls+ ++  k+ kn
  CCE30522.1 296 KLSKDQKTEKLAKN 309
                 12222222222222 PP

  == domain 2  score: 155.6 bits;  conditional E-value: 1.5e-49
     DUF1115   2 vfriksLsnpkhrfkvdknAkqlsltGvvllgpkfnlvvveGgekaikkYkklmlrrikWteeer.edeeeeeekeaakekkeeeekdedekeeekdls 99 
                 v +i+sL+n++hr+kv  nA q++l+G ++++p+fnlv+veGg+ +i kYkklml+ri+Wte+++ +      + e+ +e ++e+ k+e++++  kd+s
  CCE30522.1 322 VLKISSLANGQHRYKVGVNAAQMALSGTCIMHPRFNLVIVEGGSWSITKYKKLMLNRIDWTENSPpR------NRENGSEPDKEWLKAENSDGVLKDMS 414
                 789***********************************************************99323......2334567899**************** PP

     DUF1115 100 nnkcelvweGevkkrnFkkwkfkeceteeearevLekkgvehywdla 146
                  n+c+lv+eGe k r+F+kw+ k+cet++ear++L +  + ++w+la
  CCE30522.1 415 LNRCTLVFEGEQKARAFRKWSTKVCETDAEARDILARVRMDNFWSLA 461
                 ********************************************986 PP

>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.8   1.9e-05      0.11       2     107 ..     213     317 ..     212     345 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
        GET2   2 LSeaEKrrlLRERRqaKmakGgAssRLnkItgqgssvksst.tsvLd......epaaekttpasttasssssaseh.ddpeiediseiavkpkktassk 92 
                 L+ +E+++++R RR a +++ +A+ RL  +     +vk+ +   vL       + +++++ +a  + + ++++++h ++ e  +    ++k++kt++++
  CCE30522.1 213 LTSKEQAKIRRQRRMADLKEMQAKIRLGLVPAPPPKVKKGNlMRVLGdgkfffAVKDPTAVEARVNREIAQRHQNHvQNNEARK----LSKDQKTEKLA 307
                 7899************************************99999988888874344444444444444443332202223333....22223332222 PP

        GET2  93 kksplseesepeapq 107
                      +++++++++ 
  CCE30522.1 308 -----KNQQKDAEKG 317
                 .....2222333334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1186  (0.0661498); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3429.10
//
Query:       CCE30523.1  [L=107]
Description: uncharacterized protein CPUR_04371 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-13   50.9   0.0    1.5e-13   50.8   0.0    1.0  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   8.2e-18   1.5e-13      96     191 ..       5     105 ..       1     107 [] 0.91

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 8.2e-18
                 EET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHH......HHHHHHHHH CS
       RVT_1  96 kvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskee......lqelleave 188
                 +++++++ + + f ++r++ ++++++ ++ +++ +g+pqGs++SP+lf +++ +l ++l+ + +   +l + DD+ i++ +++       l++++++++
  CCE30523.1   5 GLQPWMVAWTRGFTTGREAFLHFENQMIEAIPVPAGVPQGSPISPILFLIYIAPLYEKLKAA-EHTITLGFSDDTNIIAYGRTVeetqerLESAWSICQ 102
                 6778999*****************************************************85.899999**********99888888888888888888 PP

                 HHH CS
       RVT_1 189 ewl 191
                 +w 
  CCE30523.1 103 DWS 105
                 885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 815.12
//
Query:       CCE30524.1  [L=701]
Description: related to NEUROFIBROMIN [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4882.40
//
Query:       CCE30525.1  [L=1046]
Description: related to neurofibromin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   14.4   0.1         11    5.5   0.0    3.1  3  BAR       BAR domain


Domain annotation for each model (and alignments):
>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.001        19     105     143 ..     121     158 ..     120     161 .. 0.92
   2 ?   -1.4   0.1     0.084   1.5e+03     180     209 ..     716     745 ..     701     758 .. 0.82
   3 ?    5.5   0.0   0.00063        11      69     132 ..     852     922 ..     829     936 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.001
         BAR 105 vkklaqteeelekrvetnfldplrellekefkeiqkerk 143
                 vk++ qt+++l ++++++ + p ++ll +++++++ +++
  CCE30525.1 121 VKRMLQTLSQLLEPITDDYILPAQTLL-GQLPDYDVCIQ 158
                 68999**********************.*****998876 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.084
         BAR 180 lrkAqqkfeesneelkaeLpnllalevefv 209
                 lr + q   ++n e+++ + ++l++ev+ +
  CCE30525.1 716 LRLSVQHLGCQNSEVREAMREVLSTEVSSM 745
                 7777888999****************9875 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.00063
         BAR  69 l.....keqplelLaesmieagkelgedss.fgkalekygeavkkl.aqteeelekrvetnfldplrelle 132
                 +     ++q le++++++   +++  ++ s  g+ le++ +++k+l   +++ l + + +  l+p+++ + 
  CCE30525.1 852 RddvsiRNQLLEHISDWISRPFAPEQDRHSnTGSRLEEFYRVQKDLdKACLTALADVTLRLPLQPIDNQTG 922
                 1334558999***************9999989**************5556777777777777888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1046 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 6923.93
//
Query:       CCE30526.1  [L=632]
Description: related to exocyst complex 70 kDa component [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-91  305.3   0.0    1.4e-90  304.1   0.0    1.7  3  Exo70           Exo70 exocyst complex subunit
  ------ inclusion threshold ------
      0.069   13.4   0.7        3.4    8.0   0.0    3.4  4  FliS            Flagellar protein FliS
       0.23   10.6   0.9       0.68    9.0   0.3    2.0  2  PLU-1           PLU-1-like protein
        0.3   10.9   4.6        2.6    7.9   0.8    3.0  3  Apolipoprotein  Apolipoprotein A1/A4/E domain
       0.46   10.4   3.2        4.9    7.0   0.1    3.2  3  Sec8_exocyst    Sec8 exocyst complex component specific domai


Domain annotation for each model (and alignments):
>> Exo70  Exo70 exocyst complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.89   3.2e+03      98     115 ..      33      50 ..      17     142 .. 0.56
   2 ?   -4.1   0.0       1.7   6.3e+03      26      68 ..     199     239 ..     196     242 .. 0.64
   3 !  304.1   0.0     4e-94   1.4e-90       1     374 [.     246     628 ..     246     630 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.89
       Exo70  98 evkaeleellkklsetak 115
                 +++++++++l+kl+ + +
  CCE30526.1  33 QLTKKIQASLEKLEASGQ 50 
                 444444444444433332 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.7
       Exo70  26 fgeseseresvfaeiakesitellqllrefge.avakkskrspe 68 
                 +++++s + ++faei  + +      l +++  +v++++k++++
  CCE30526.1 199 QQADDSAASKIFAEIRGPYL---SSSLANLAAaSVNTAKKKNTD 239
                 56678888889999888888...555554555456655555665 PP

  == domain 3  score: 304.1 bits;  conditional E-value: 4e-94
       Exo70   1 krwikayktavkvlfasErrlleqifgeseseresvfaeiakesitellqllrefgeavakkskrspeklfklLdmyealsdllpeleslfsgeaksev 99 
                 +++i++y++a++ +f sE++++++if   ++++ svf+++++++++el++++re++ ++++++  ++++++++ +++e +s l+ +l++ ++     e+
  CCE30526.1 246 TNGISTYAQAMEAIFLSEYDNICSIFR--REDWGSVFQATCRGAVSELARTVRELNAHIKSHL--NTDCYLAY-EIIEIISGLSVSLDTRTG-----EL 334
                 589***********************9..**********************************..********.*****************8.....6* PP

       Exo70 100 kaeleellkklsetakslleefeesikkdssk.spvppdggvheltrnvmnylrkLleykdtlssllkdlkdeswssas.........ssqssssesss 188
                 k++l+++lk+++etaksll+e++e+++k+++  +++p+dg+  +l++++m++l++++e+ +++ss++ +l+d++w+s+          +++s++s++ +
  CCE30526.1 335 KDSLAAALKPVRETAKSLLSELLEDTRKKAAAlQTLPSDGAYPPLVVETMQRLQTMVEFLRPISSIMISLGDGGWKSNLgsvgggptdAIPSLASFDIG 433
                 *****************************999********************************************999******************** PP

       Exo70 189 adgesllalfladlisaLesnLeakakl.ykdkslqgiFlmNNlhyilqkvkrselklllgddwlrkhekkikqyaksYeresWskvlslLkdeglts. 285
                 adg+ ++a+++ d i+aL+  L++k+k  ++ ks+ g+F++N + +i++ +++s+l+ ll+++  + ++++ k+++++Y ++ +++++ +L d+++t+ 
  CCE30526.1 434 ADGKDIFAHYCIDSIDALLVALDQKSKVlLRGKSVAGVFIANCVVVIERGIRDSDLGPLLQSR-SDVLDQWHKKATAAY-TDVCRDLSVYLFDTIHTNr 530
                 ****************************99******************************888.99*************.9****************** PP

       Exo70 286 .............sskklssskekeqikekfkkFnsaFeelvrkqkswkvpDpeLReeLrreikekvipaYrkFlerykevdftknpekyvkytpedle 371
                               +k+ls sk+k++ikekf++Fn aF+++v+k+ks+++ +pe+R+++ r+i++k+ p+Y +F++ry+e d+ k+  kyvky++ ++ 
  CCE30526.1 531 tqrptsgqadsatVVKGLS-SKDKDKIKEKFTQFNVAFDDMVAKHKSYCM-EPEVRSMFGRDIRQKLQPLYDRFWDRYHEIDKGKG--KYVKYDKASIA 625
                 ************8888888.******************************.9******************************9988..********998 PP

       Exo70 372 nlL 374
                 +++
  CCE30526.1 626 AVF 628
                 875 PP

>> FliS  Flagellar protein FliS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.2   4.5e+03      41      65 ..      21      46 ..       4      55 .. 0.55
   2 ?    1.0   0.1      0.14     5e+02       8      54 ..      95     141 ..      90     151 .. 0.83
   3 ?    8.0   0.0   0.00094       3.4      36      76 ..     302     340 ..     277     345 .. 0.73
   4 ?   -1.7   0.0      0.95   3.4e+03      67      87 ..     588     608 ..     584     615 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.2
                HHHHHHHHHHHHHHHHHHHHTCCT.T CS
        FliS 41 iekkgeaiskaqdIiseLrasLdl.e 65
                ++  +  + k++++ ++ +asL+  e
  CCE30526.1 21 VDVLNSRLDKTTQLTKKIQASLEKlE 46
                44444555555555555555554333 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.14
                 CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH CS
        FliS   8 svetaspeklvlmLydgalkflkrakeaieekdiekkgeaiskaqdI 54 
                 ++  a pek  l  y g lk+l+r  + +++ ++ + ++ +s  +++
  CCE30526.1  95 QIIRAGPEKAGLSSYLGSLKRLNRSYADMQASNLRANQHTMSDLIRL 141
                 66778899999999999999999999999999999888888877766 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00094
                 HHTTTHHHHHHHHHHHHHHHHHHHHTCCTTTSCHHHHHHHH CS
        FliS  36 ieekdiekkgeaiskaqdIiseLrasLdlekggeiaknLaa 76 
                 i + ++ +        ++Iis+L+ sLd+  g e+ ++Laa
  CCE30526.1 302 I-KSHLNTDCYLAYEIIEIISGLSVSLDTRTG-ELKDSLAA 340
                 3.556666777777899************996.99988875 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.95
                 SCHHHHHHHHHHHHHHHHHHH CS
        FliS  67 ggeiaknLaalYdyiirrlle 87 
                 g +i ++L+ lYd + +r  e
  CCE30526.1 588 GRDIRQKLQPLYDRFWDRYHE 608
                 568999*******99888766 PP

>> PLU-1  PLU-1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3   0.00019      0.68     209     307 ..      25     156 ..       2     161 .. 0.65
   2 ?   -1.5   0.0      0.31   1.1e+03     222     260 ..     353     390 ..     280     401 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00019
       PLU-1 209 qelleaaekweekakelLeareklsleeLeallneaq.........................................eipvslpslaaleeilkkare 266
                 +++l++  ++++k +          le+Lea  ++++                                         +i  + p  a l++ l ++++
  CCE30526.1  25 NSRLDKTTQLTKKIQAS--------LEKLEASGQSVRdvagpisgetrrlqllgnnvvsvlaaidrlrkpadskdseeQIIRAGPEKAGLSSYLGSLKR 115
                 34444444444444443........33333333333333344445555666666666666666666666666777776677777889999********* PP

       PLU-1 267 wqrkveelikssqdaaerptlseleellkkg.eslpvkleel 307
                 ++r+++++ ++s+  a++ t+s+l +l+++g  +l +++++l
  CCE30526.1 116 LNRSYADM-QASNLRANQHTMSDLIRLMQSGsAQLEIYFDKL 156
                 ********.666744466*************666***99976 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.31
       PLU-1 222 akelLeareklsleeLeallneaqeipvslpslaaleei 260
                 ++elLe   + + + L+ l ++ +  p+++++++ l+ +
  CCE30526.1 353 LSELLE-DTRKKAAALQTLPSDGAYPPLVVETMQRLQTM 390
                 233334.55555555555555555555555555555554 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2      0.03   1.1e+02     148     172 ..      31      54 ..       8      87 .. 0.58
   2 ?    7.9   0.8   0.00072       2.6      52      94 ..     326     368 ..     287     372 .. 0.59
   3 ?   -3.9   0.0         3   1.1e+04      16      30 ..     591     605 ..     588     608 .. 0.52

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.03
                     ----SSSHHHHHHHTS-TTSHHHHH CS
  Apolipoprotein 148 veerlssrveelrekleeqaeelre 172
                       ++l++++++  ekle+  + +r+
      CCE30526.1  31 T-TQLTKKIQASLEKLEASGQSVRD 54 
                     2.23334444444444444444443 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00072
                     HCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCH CS
  Apolipoprotein  52 rlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelq 94 
                     +l +++ e++  l++ l+ +r++ +++++el e  +++a +lq
      CCE30526.1 326 SLDTRTGELKDSLAAALKPVRETAKSLLSELLEDTRKKAAALQ 368
                     3344444444444444444444444444444444444444444 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 3
                     HHHCHHCHHHHHHHH CS
  Apolipoprotein  16 leeqlaplaqelrdr 30 
                     ++++l pl+++++dr
      CCE30526.1 591 IRQKLQPLYDRFWDR 605
                     444555555555554 PP

>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.061   2.2e+02      68     126 ..      25      83 ..      14      94 .. 0.70
   2 ?   -1.3   0.1       0.5   1.8e+03      62      84 ..     240     262 ..     227     267 .. 0.77
   3 ?    7.0   0.1    0.0014       4.9      77     126 ..     319     370 ..     312     372 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.061
  Sec8_exocyst  68 nssiasYskilssiqesqekvselKesleeakkklstkkkeLkelnarsakykevieiL 126
                   ns     +++ ++iq s ek+++  +s+++    +s +   L+ l ++ + +   i+ L
    CCE30526.1  25 NSRLDKTTQLTKKIQASLEKLEASGQSVRDVAGPISGETRRLQLLGNNVVSVLAAIDRL 83 
                   55555566777788888888888888888888888888888877777665555555544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.5
  Sec8_exocyst  62 ehhqaFnssiasYskilssiqes 84 
                   + + a +++i++Y +++++i  s
    CCE30526.1 240 AIYRAGTNGISTYAQAMEAIFLS 262
                   556677899********999665 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0014
  Sec8_exocyst  77 ilssiqes.qekvselKesleeakkkl.stkkkeLkelnarsakykevieiL 126
                   i+s ++ s  +++ elK+sl++a k + +t k+ L+el ++++k    +++L
    CCE30526.1 319 IISGLSVSlDTRTGELKDSLAAALKPVrETAKSLLSELLEDTRKKAAALQTL 370
                   55666666246789*************66777889***********999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      740  (0.0412739); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4351.35
//
Query:       CCE30527.1  [L=103]
Description: probable histone H4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-09   37.0   0.1    3.5e-09   36.8   0.1    1.2  1  CENP-T_C         Centromere kinetochore component CENP-T hist
    9.6e-06   26.0   0.2    1.1e-05   25.8   0.2    1.2  1  Histone          Core histone H2A/H2B/H3/H4
    4.8e-05   23.4   0.1    6.9e-05   22.9   0.1    1.3  1  TAF              TATA box binding protein associated factor (
    0.00019   21.7   0.1    0.00032   20.9   0.1    1.5  1  CBFD_NFYB_HMF    Histone-like transcription factor (CBF/NF-Y)
    0.00035   20.9   0.1    0.00051   20.4   0.1    1.4  1  CENP-S           CENP-S protein
     0.0057   16.7   0.0     0.0069   16.5   0.0    1.1  1  TFIID-31kDa      Transcription initiation factor IID, 31kD su
  ------ inclusion threshold ------
      0.034   14.1   0.0       0.04   13.9   0.0    1.3  1  Bromo_TP         Bromodomain associated
      0.054   13.5   0.0       0.06   13.3   0.0    1.1  1  HIGH_NTase1_ass  Cytidyltransferase-related C-terminal region


Domain annotation for each model (and alignments):
>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.1   1.5e-12   3.5e-09      16      79 ..      33      96 ..      18      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.5e-12
    CENP-T_C 16 lakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79
                 a r   ++g  +++++  ++   ++++ f+e v +D  +y++Ha+RKt+ + Dv+  +krq++
  CCE30527.1 33 PAIRRLARRGGVKRISAMIYEETRTVLKSFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96
                44444445567789************************************************86 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.2     5e-09   1.1e-05      77     129 ..      40      92 ..      16      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 5e-09
                 TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  77 sekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 +++  +risa+  +   ++l+ +l+ +  +A  +++haKR+T+t+ D+  A++
  CCE30527.1  40 RRGGVKRISAMIYEETRTVLKSFLEGVIRDAVTYTEHAKRKTVTSLDVVYALK 92 
                 477889999***************************************99987 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   3.1e-08   6.9e-05       5      66 .]      31      92 ..      27      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3.1e-08
                -HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  5 pkesvkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                +k +++ +A   G++ +s+   ++    ++  l  ++++a+ +++h+kR++ t+ Dv +AL+
  CCE30527.1 31 TKPAIRRLARRGGVKRISAMIYEETRTVLKSFLEGVIRDAVTYTEHAKRKTVTSLDVVYALK 92
                66677778888888888877777777777778889*************************98 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   1.4e-07   0.00032       7      65 .]      34      91 ..      28      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.4e-07
                   HHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  7 rvkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   +++++ +   ++++i+    e    +++ f+e + + A+ +++++krKt++  ++  A+
     CCE30527.1 34 AIRRLARRG-GVKRISAMIYEETRTVLKSFLEGVIRDAVTYTEHAKRKTVTSLDVVYAL 91
                   577888888.88999999999999999***************************98876 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   2.3e-07   0.00051      42      73 ..      63      94 ..      21      97 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.3e-07
      CENP-S 42 lenlakDLeaFakHAkRstittdDvlLlaRrn 73
                le + +D  ++ +HAkR+t+t  Dv+  ++r+
  CCE30527.1 63 LEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                677889999****************9998885 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.1e-06    0.0069      12      70 ..      36      94 ..      31     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.1e-06
  TFIID-31kDa 12 hliLaslgvteyeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAiqsr 70
                 + + +  gv+ ++  +++    +   +   v++dA ++ ehak+k+v+  dv  A++ +
   CCE30527.1 36 RRLARRGGVKRISAMIYEETRTVLKSFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                 5566667888888888888888899999************************9998865 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.8e-05      0.04      33      70 ..      56      93 ..      27      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
                HHHHHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHH CS
    Bromo_TP 33 teiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70
                + +++++++ + ++a  + eha R ++t  Dvv +L++
  CCE30527.1 56 RTVLKSFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKR 93
                5688999999**************************97 PP

>> HIGH_NTase1_ass  Cytidyltransferase-related C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.7e-05      0.06      69     109 ..      25      65 ..      11      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.7e-05
  HIGH_NTase1_ass  69 erieGvsGtkireavvegnlekvkdmlPeetievlkeelen 109
                      + i+G++   ir+    g +++++ m+ eet +vlk++le 
       CCE30527.1  25 DNIQGITKPAIRRLARRGGVKRISAMIYEETRTVLKSFLEG 65 
                      679*********************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 760.93
//
Query:       CCE30528.1  [L=12]
Description: uncharacterized protein CPUR_04376 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (12 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        70  (0.00390429); expected 358.6 (0.02)
Passed bias filter:                       34  (0.00189637); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 91.49
//
Query:       CCE30529.1  [L=136]
Description: histone H3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-51  174.1   2.5    1.8e-51  173.9   2.5    1.0  1  Histone        Core histone H2A/H2B/H3/H4
    8.4e-06   26.1   0.0    1.3e-05   25.5   0.0    1.2  1  CENP-S         CENP-S protein
    3.4e-05   24.5   1.0    3.9e-05   24.3   1.0    1.2  1  PAF            PCNA-associated factor histone like domain
    3.6e-05   23.8   0.4    6.4e-05   23.0   0.1    1.6  2  CENP-T_C       Centromere kinetochore component CENP-T histon
     0.0035   17.6   0.3     0.0065   16.7   0.0    1.5  2  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
  ------ inclusion threshold ------
      0.028   14.5   0.2      0.046   13.8   0.0    1.5  2  TFIID-31kDa    Transcription initiation factor IID, 31kD subu
      0.057   13.4   0.0      0.097   12.7   0.0    1.4  1  Bromo_TP       Bromodomain associated


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.9   2.5     7e-55   1.8e-51       1     131 []       1     132 [.       1     132 [. 0.99

  Alignments for each domain:
  == domain 1  score: 173.9 bits;  conditional E-value: 7e-55
                 XXEESXEEEXXXXEEXXXXXXXXXXHT.TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHH CS
     Histone   1 marekekarkesektapekkvsakker.kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEa 98 
                 mar+k++ark+++++ap+k++++k +r +a+s+   kk++ry+pgtval+eir+yqkst+lli+klpf+R+vrei +++k+dlr++++a+ alqe +E 
  CCE30529.1   1 MARTKQTARKSTGGKAPRKQLASKAARkSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVES 99 
                 9************************************************************************************************** PP

                 HHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone  99 llvelfeeAnllakhaKRvTitpkDiqlArrlr 131
                 +lv+lfe++nl+a+haKRvTi++kDiqlArrlr
  CCE30529.1 100 YLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLR 132
                 *******************************97 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0     5e-09   1.3e-05      13      71 ..      70     130 ..      65     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5e-09
      CENP-S  13 kiveeeaa..ekeveatkqfiaaltelvykqlenlakDLeaFakHAkRstittdDvlLlaR 71 
                 ++v+e+a+  ++++++ +++i+al e v   l +l +D ++ a HAkR ti+ +D+ L  R
  CCE30529.1  70 RLVREIAQdfKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLARR 130
                 4555544423677789999*************************************99766 PP

>> PAF  PCNA-associated factor histone like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   1.0   1.5e-08   3.9e-05       1      62 [.       1      58 [.       1      88 [. 0.90

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.5e-08
         PAF  1 mVRTkAdvssarkavaakAprkslgassssssssssspkkkkkkyvGGNpvcpRptPaWQKp 62
                m RTk ++   rk  ++kAprk+l+++   +s+ s++  kk + y +G  v  R++   QK 
  CCE30529.1  1 MARTKQTA---RKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPG-TVALREIRRYQKS 58
                99******...****************999999999988888888888.6888999999986 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.9   7.3e+03      14      25 ..      19      30 ..      14      39 .. 0.59
   2 !   23.0   0.1   2.5e-08   6.4e-05      11      76 ..      70     130 ..      58     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.9
    CENP-T_C 14 kklakrfakasg 25
                k+la+++a++s+
  CCE30529.1 19 KQLASKAARKSA 30
                445555555544 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.5e-08
    CENP-T_C  11 avvkklakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkr 76 
                  +v+ +a++f     s  + + +a+ al+++ + ++  + eD +  a Ha+R ti+++D+ l  +r
  CCE30529.1  70 RLVREIAQDF----KSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQL-ARR 130
                 3455566666....5679*****************************************864.444 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       5.6   1.4e+04      39      46 ..      20      27 ..      19      29 .. 0.58
   2 !   16.7   0.0   2.5e-06    0.0065       2      64 ..      65     128 ..      64     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.6
                   HHHHHHHH CS
  CBFD_NFYB_HMF 39 elaseAae 46
                   +las+Aa+
     CCE30529.1 20 QLASKAAR 27
                   46666664 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.5e-06
                    XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklA 64 
                    +LP  r  + + +d +++ ++ ++A   ++e+ve ++ +l + ++  + ++kr ti+ ++i+lA
     CCE30529.1  65 KLPFQRLVREIAQDfKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLA 128
                    78999988878888899********************************************998 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         3   7.6e+03      73      90 ..      10      27 ..       4      31 .. 0.63
   2 ?   13.8   0.0   1.8e-05     0.046      23      67 ..      85     129 ..      68     136 .] 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3
  TFIID-31kDa 73 kqfkepppkelLlelAae 90
                 k+  ++ p++ L + Aa+
   CCE30529.1 10 KSTGGKAPRKQLASKAAR 27
                 455556777777776654 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.8e-05
  TFIID-31kDa  23 yeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAi 67 
                  +++  +  L + +  y +s++ed +++a hak+ +++ +d++lA 
   CCE30529.1  85 FQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLAR 129
                  677778889999999****************************95 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.8e-05     0.097      23      66 ..      84     127 ..      70     129 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.8e-05
                 EE-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SS--HHHHHH CS
    Bromo_TP  23 saeesaLEtLteiaqkYirelgeqaksfaehagRseptlkDvvl 66 
                 ++++sa+ +L+e +++Y+ +l e+++  a ha R + + kD+ l
  CCE30529.1  84 RFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQL 127
                 5899********************77777************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 992.64
//
Query:       CCE30530.1  [L=315]
Description: uncharacterized protein CPUR_04378 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-36  125.2   0.0    4.4e-36  124.9   0.0    1.1  1  Cupin_8   Cupin-like domain
    2.3e-07   30.6   0.0    4.3e-07   29.7   0.0    1.5  1  Cupin_4   Cupin superfamily protein
  ------ inclusion threshold ------
      0.092   12.5   0.0        1.3    8.7   0.0    2.0  2  AAA_24    AAA domain


Domain annotation for each model (and alignments):
>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   0.0   7.4e-40   4.4e-36       3     251 ..      26     256 ..      24     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 124.9 bits;  conditional E-value: 7.4e-40
     Cupin_8   3 effreyvakskPviikgalkdwpalqkwtddeylleylkekaedvkvsvektpdgeadsfkeneelkfvkpeeeemtfkdfldelearrdtrsepyayl 101
                 + f+++++   Pv+i+ a + + ++qkwt+ +y++++++    d++v +++++   +d  +en+++ ++++ +++++f+d +++ ea+  + + ++++ 
  CCE30530.1  26 QQFQDILEAAVPVVIEKA-DFGDCVQKWTT-TYMIDRVG---HDTQVIIHEGQ---RD--SENMDFIAKNFCYVTQSFEDVIRRAEAGH-RVYLRSLSR 113
                 45799*************.6699******5.66666655...45555554433...22..3456777899*****************96.444555555 PP

     Cupin_8 102 .....qnanlasefpelkedsdlpfateafgkkpeavnlWlGnsasvsslHkDhyeNlycvvrGrKkftLfpPsdapflyeaslsptedgtvvssvdve 195
                      q an++ +fp l +d++lp   + ++ +  +  l+++  +  ++lH+D++ N+y++v G K+++LfpP+d+++l  a+      g+++ss+dv 
  CCE30530.1 114 erpidQPANINLDFPGLASDFHLPDQMKSVQDSLFSSVLRVSG-RVNMWLHYDVMANIYAQVVGSKRLVLFPPTDIQNLAFAP------GASSSSLDVF 205
                 88888********************9999**99999******9.9*************************************9......999*****88 PP

     Cupin_8 196 epdlekfprlkdakkalevtlnaGevLylPalWfHeVkslaeeplhlavnywydms 251
                 +    +  +++ + ++ e+tln+G++LylP lW+H +k+    + ++a+n+++++ 
  CCE30530.1 206 SEL--SSCQMTGT-HPHEATLNPGDILYLPPLWLHAAKTI--AGPSIAINVFFRNL 256
                 753..34455566.************************99..555********976 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   7.2e-11   4.3e-07     170     210 ..     212     254 ..     131     262 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 7.2e-11
                 G--.S-SEEEEE-TT-EEEE-TT-EEEEEBBT.-CCEEEEEEC CS
     Cupin_4 170 def.epvedfvLepGDlLYlPrgviHqgvaed.esltlSvglr 210
                 ++  ++ ++  L+pGD+LYlP+ + H +++ + +s+ + v +r
  CCE30530.1 212 QMTgTHPHEATLNPGDILYLPPLWLHAAKTIAgPSIAINVFFR 254
                 33348889***********************988888777666 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00022       1.3      29     138 ..       8     119 ..       7     135 .. 0.84
   2 ?    1.4   0.0     0.037   2.2e+02      89     129 ..     260     303 ..     248     311 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00022
      AAA_24  29 idtekGlksldadkfpdieswedfldevvel........aaeladyktlviDtideleelclaevirqnekaeskedkgdgkGygelaeefrrllkklq 119
                 i +e+++ ++  ++++++++++d+l+++v +        ++ ++   t+ iD +++  + +++e +r +e+++ +     +k + ++++ f +++++ +
  CCE30530.1   8 IEVEASFTNIARTRLETPQQFQDILEAAVPVviekadfgDCVQKWTTTYMIDRVGHDTQVIIHEGQRDSENMDFI-----AKNFCYVTQSFEDVIRRAE 101
                 6789*************************999999999988888889***************9999999997777.....4558999999999999875 PP

      AAA_24 120 elrknvifiahektrkded 138
                  +++ v++ + +++r +++
  CCE30530.1 102 -AGHRVYLRSLSRERPIDQ 119
                 .456666666666666555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.037
      AAA_24  89 nekaeskedkgdgkGygelaeefrrllkklqelrk...nvifia 129
                   ++++  ++ d+++y + + ++ r+ k++qel+    ++++i 
  CCE30530.1 260 YAAGRDAYGNRDLAAYEKGRLDVERIGKRFQELPLatrHFYLIR 303
                 55677788899999*******************99999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2439.63
//
Query:       CCE30531.1  [L=468]
Description: probable cystathionine beta-lyase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-136  455.4   0.0   1.3e-136  455.2   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    1.6e-05   24.3   0.0    2.4e-05   23.7   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
    7.5e-05   21.4   0.0    0.00025   19.7   0.0    1.7  1  Met_gamma_lyase  Methionine gamma-lyase
     0.0006   19.2   0.1     0.0017   17.7   0.0    1.7  2  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
      0.097   12.5   0.0        6.9    6.5   0.0    2.7  2  ZFYVE21_C        Zinc finger FYVE domain-containing protein 2


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  455.2   0.0  3.5e-140  1.3e-136      10     381 ..      57     419 ..      48     420 .. 0.97

  Alignments for each domain:
  == domain 1  score: 455.2 bits;  conditional E-value: 3.5e-140
                      TCHTTTTBSS--B---SBBBESSHHHHCTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEEEESTSSHH CS
  Cys_Met_Meta_PP  10 ekdeqtgavavpiyltstykfkdvdeafageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGdeivvsddlYgg 103
                      +  +q+ga++ piy+++t+k++     + g +++y+Y+Rsgnptr+ le+++a++ +++++lavssGm+A+  ++++ll+ Gde+++ ddlYgg
       CCE30531.1  57 K--DQYGASSIPIYQSATFKQT----SASGGQQEYDYTRSGNPTRTYLERHLAKIMNANRVLAVSSGMGAL-DVVTRLLRPGDEVITGDDLYGG 143
                      3..489****************....56667788*************************************.99******************** PP

                      HHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT..-EEEEEGTTTHTTTS-GGGGT-SEEEEE CS
  Cys_Met_Meta_PP 104 tqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkag..vlvvvDntfaspllqrplklgaDivvhS 195
                      t+rll++++++ gi v++ dt++++++++ ++++t +v+lEtptnpl+k+vD+++ia++a++ +  +lvvvDnt++sp+l++pl+lgaDiv++S
       CCE30531.1 144 THRLLTYMATNQGIVVHHADTTNAKAVQERLSDKTAMVLLETPTNPLIKIVDLASIARMAHETNpkALVVVDNTMLSPMLCNPLDLGADIVYES 237
                      ***************************************************************999**************************** PP

                      TTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTSTTSTTHHH CS
  Cys_Met_Meta_PP 196 aTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekvyYpglpshpqhel 289
                      +TKyl+Gh+d++aGvi++++   ++++l f+ n++G+ lsp+d++ll+rG+kTL++R+e++q +A+++AefLe+h    +v+Ypgl+shpq++l
       CCE30531.1 238 GTKYLSGHHDIMAGVIACNE-ATIADRLFFTINSTGCGLSPNDSFLLMRGVKTLAIRMEKQQTSAQAIAEFLESHG--FRVRYPGLKSHPQYDL 328
                      *******************9.******************************************************9..9*************** PP

                      HHHHSSSG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 290 akkqlkgaggvlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvdDliaDlkqal 381
                      + + ++gag+vlsFe++++ + ++++v++ +l+++++s+G+v+sli++p++m+hasi++++r ++ + +d+iRl+vGiEd dDli+Dl++a 
       CCE30531.1 329 HWSIARGAGAVLSFETGDT-AVSERIVEAARLWAISVSFGCVNSLISMPCQMSHASIDAKTRSERHMPEDIIRLCVGIEDKDDLIEDLSRAV 419
                      *****************99.679*****************************************************************9986 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   6.7e-09   2.4e-05      32     188 ..      82     216 ..      51     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 6.7e-09
                    HHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSE.EEEEEBEETT CS
  Aminotran_1_2  32 laggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsgge.vvryplysee 126
                    ++  +++++g+++    le  lak ++        +++ + v+sG g +++++++ll+  pgde++  d  y+  ++ l ++     + ++     
     CCE30531.1  82 QQEYDYTRSGNPT-RTYLERHLAKIMN--------ANRVLAVSSGMG-ALDVVTRLLR--PGDEVITGDDLYGGTHRLLTYMATNqGIVVH----H 161
                    5555667777777.889999*******........885566666666.6677889998..******9999999999988877666555555....2 PP

                    TTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEE CS
  Aminotran_1_2 127 dfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDe 188
                      + +++a++e l++      kt ++l+e+p NP  ++ +l+ +  ++  ++  ++l++vD 
     CCE30531.1 162 ADTTNAKAVQERLSD------KTAMVLLETPTNPLIKIVDLASIARMAHETNP-KALVVVDN 216
                    227788888899998......999***********************666664.99999995 PP

>> Met_gamma_lyase  Methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   7.1e-08   0.00025      57     301 ..      95     315 ..      72     332 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 7.1e-08
  Met_gamma_lyase  57 rdtldkvyaevfgaeaalvrpqlvsGthaiatalfgvlrpgdellaitGk.PydtleeviGlrgegqgslkdfgikykevdlleegkvdieavk 149
                      r  l++  a++++a+  l    + sG  a+ + +   lrpgde++  tG   y                l  +  + + + ++++++ + +av+
       CCE30531.1  95 RTYLERHLAKIMNANRVLA---VSSGMGALDV-VTRLLRPGDEVI--TGDdLYGGT-----------HRLLTYMATNQGIVVHHADTTNAKAVQ 171
                      5556666666666665443...3455555544.345666666653..342023333...........3344555555566667778899***** PP

  Met_gamma_lyase 150 eaikektkliliqrskGyserkslsieeieeiiklvkeinedvivfvdncyGefveekePtevGadliaGsliknpGGgiaktGGyiaGkeelv 243
                      e + +kt ++l+       + + ++i ++++i ++ +e n++ +v vdn     +   +P ++Gad++  s  k   G    + G ia +e  +
       CCE30531.1 172 ERLSDKTAMVLLETP----TNPLIKIVDLASIARMAHETNPKALVVVDNTMLSPM-LCNPLDLGADIVYESGTKYLSGHHDIMAGVIACNEATI 260
                      ***********9976....5799**************************987655.579******************************99988 PP

  Met_gamma_lyase 244 e.aasyrltaPGiGkeaGatldslrelyqGl.flaPhvvaealkgavllarlleklgfev 301
                        +  + + + G G +   ++  +r    G+  la ++ ++   +a+ +a++le+ gf+v
       CCE30531.1 261 AdRLFFTINSTGCGLSPNDSFLLMR----GVkTLAIRMEKQQ-TSAQAIAEFLESHGFRV 315
                      5145567777777766666665554....4314666665554.45666777777777776 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.8e-07    0.0017      21     137 ..      90     206 ..      74     215 .. 0.79
   2 ?   -2.6   0.0      0.73   2.6e+03     278     318 ..     290     326 ..     285     332 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.8e-07
                      S.SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEE CS
  DegT_DnrJ_EryC1  21 s.gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertk 113
                      s +p+ + +E+ +a+ ++++ ++avssG  Al ++ r l   pgdeVI+    + +t    +++  +   v  ++dt n  ++a+++ +  +t+
       CCE30531.1  90 SgNPTRTYLERHLAKIMNANRVLAVSSGMGALDVVTRLLR--PGDEVITGDDLYGGTHRLLTYMATNQGIVVHHADTTN--AKAVQERLSDKTA 179
                      356788889**************************99975..77******99999999988888877777777777765..5677788888887 PP

                      EEE...EB-GGGB---HHHHHHHHHHC CS
  DegT_DnrJ_EryC1 114 aIl...pVhlyGqvadmdalkaiaakh 137
                       +l   p + + +++d++++ ++a+++
       CCE30531.1 180 MVLletPTNPLIKIVDLASIARMAHET 206
                      775333566677777777777777765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.73
                      EEEEEHCCHHHCHHHHHHHHHHCCEE-B-SGSCHGGGSCCH CS
  DegT_DnrJ_EryC1 278 yavlveeeaevkrdelvealkeegigtrvhypnplhrqpvy 318
                      +a+++e++++ + ++++e+l+++g  +rv yp  l+++p y
       CCE30531.1 290 LAIRMEKQQT-SAQAIAEFLESHG--FRVRYP-GLKSHPQY 326
                      5678887655.8999999999886..566774.67777766 PP

>> ZFYVE21_C  Zinc finger FYVE domain-containing protein 21 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0019       6.9      16      69 ..     157     210 ..     145     221 .. 0.84
   2 ?    2.8   0.0     0.028     1e+02      28      78 ..     270     321 ..     263     329 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0019
                 EEE--SS--S-EEEEEEE-TTSSEEEEESSSEEEEETTT---EE----SS-SSS CS
   ZFYVE21_C  16 fsvtlgeseksetmvCrLssnqrfllldgdshaevelsrisevqiltegadpgg 69 
                 + v++ ++ +++++  rLs +  ++ll+  ++  +++  ++++  ++++++p++
  CCE30531.1 157 IVVHHADTTNAKAVQERLSDKTAMVLLETPTNPLIKIVDLASIARMAHETNPKA 210
                 5688888899999******************************99999999874 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.028
                 EEEEEE-TTSSEEEEESSSEEEEETTT--.-EE----SS-SSSSS---S--E CS
   ZFYVE21_C  28 tmvCrLssnqrfllldgdshaevelsris.evqiltegadpgggnaratglk 78 
                 ++ C Ls n  fll+ g +   + +++ + + q ++e  ++ g ++r  glk
  CCE30531.1 270 STGCGLSPNDSFLLMRGVKTLAIRMEKQQtSAQAIAEFLESHGFRVRYPGLK 321
                 567*****************99999876515678888888887777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3702.25
//
Query:       CCE30532.1  [L=81]
Description: uncharacterized protein CPUR_04380, partial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 704.97
//
Query:       CCE30533.1  [L=846]
Description: related to cutinase transcription factor 1 beta [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-37  128.3   0.1    4.8e-37  127.4   0.1    1.4  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   0.1   2.7e-41   4.8e-37       1     265 [.     208     448 ..     208     450 .. 0.95

  Alignments for each domain:
  == domain 1  score: 127.4 bits;  conditional E-value: 2.7e-41
  Fungal_trans   1 ldrffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsL 97 
                   ++ +f ++hp +p++++  f++++    + +++  s lll a+l  G++ + +++  + + +t+ +   ++f+ ra++l+  d+++++++++i+qsL
    CCE30533.1 208 IEAYFRWVHPIMPVINRCRFMRQY----RDPKNPPSLLLLQAVLLAGSRVCTNAQLMDANGSTTPA--ALTFYKRAKALY--DANYEDDRVTIVQSL 296
                   578*********************....999999999999************************98..899999******..*************** PP

  Fungal_trans  98 lllelyektssd.ralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlw 193
                   ll+ +y  + +d ++ + +++ va  +a+  g+hr  ++++      l+++++  ++R+ww+ F  D+ +a+ lGrp++++ ++ ++++  +dd+++
    CCE30533.1 297 LLMGWYWEGPEDvTKNVFYWSRVATIVAQGSGMHRSVEQSQ------LSKFDKRLWKRIWWTLFTRDRSVAVALGRPVHISLDDSDVEMLTEDDFIE 387
                   ************99999999999999***************......***********************************************999 PP

  Fungal_trans 194 esddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnW 265
                   + +d+  e+ ++      +++++++++ ++L++i++ ++++ +s+ ++ +qr+        ++  ++al  W
    CCE30533.1 388 DETDRMSEFPPD------PIHVQFFLQYVKLCEIMGLVLSQQYSVASKGRQRNAI-----DLTHSDMALADW 448
                   999999999999......9*********************************999.....777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 6259.26
//
Query:       CCE30534.1  [L=18]
Description: uncharacterized protein CPUR_04382 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (18 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       127  (0.0070835); expected 358.6 (0.02)
Passed bias filter:                      106  (0.00591221); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.25s 00:00:00.52 Elapsed: 00:00:00.38
# Mc/sec: 142.26
//
Query:       CCE30535.1  [L=664]
Description: probable protein MCD4, required for GPI anchor synthesis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-43  149.0  10.4    1.9e-43  149.0  10.4    1.6  2  PigN             Phosphatidylinositolglycan class N (PIG-N)
    2.4e-11   43.8   3.1    7.7e-10   38.9   3.1    2.2  1  Phosphodiest     Type I phosphodiesterase / nucleotide pyroph
    3.4e-09   36.5   0.1    5.5e-09   35.9   0.1    1.3  1  Sulfatase        Sulfatase
    3.8e-06   26.5   0.0      6e-06   25.8   0.0    1.2  1  Metalloenzyme    Metalloenzyme superfamily
     0.0011   18.5   1.7       0.43   10.1   0.0    2.7  2  PsaF             Family of unknown function
  ------ inclusion threshold ------
      0.028   13.4   0.1      0.045   12.7   0.1    1.2  1  Alk_phosphatase  Alkaline phosphatase


Domain annotation for each model (and alignments):
>> PigN  Phosphatidylinositolglycan class N (PIG-N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4      0.44   1.3e+03      73      98 ..      12      37 ..       2      44 .. 0.75
   2 !  149.0  10.4   6.4e-47   1.9e-43      46     229 ..     454     654 ..     435     661 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.44
        PigN 73 qkspltyylYllfPvlfweevlaerk 98
                  +  ++y+Y +f ++f++ +++ ++
  CCE30535.1 12 AIAFHLVYIYSIFDIYFVSPIVSGME 37
                45556799*********999987655 PP

  == domain 2  score: 149.0 bits;  conditional E-value: 6.4e-47
        PigN  46 ktdsktllalkflavlllllllvllllqkspltyylYllfPvlfweevlaerkilkeglkellkevksskslvkkllllllivlvlellvlgyfhreil 144
                 + +++ l +  f++  +l+ l++ ++ +ksp tyylY lfPv+fweev+a+r++l+ g+ +l+  v+s+ ++++ ll+ +l+v+v+++l++gy++re+l
  CCE30535.1 454 TIQRTFLGTAPFVT--VLVSLYASFFTSKSPATYYLYSLFPVVFWEEVFAHRESLRLGRARLFADVQSTGDVLRLLLQSALYVIVIQSLAIGYIYREVL 550
                 23333333333555..9999******************************************************************************* PP

        PigN 145 svlfvllalwpllygtsflkknsllsllWllsclllsvFpllpvektenltlvvlggllilliglll.....llksl................skksvs 222
                 + +++++a+wpl+yg sf++k+ lls+lW++sc+++s+F+llp++k+e+++l++lgg++++ igll+         +                 k+ ++
  CCE30535.1 551 TGIYIMAAAWPLTYGVSFVQKHALLSTLWAVSCFIMSIFTLLPAMKVESVPLIMLGGFIMFSIGLLYlefedY---VlsdftwtaktripgnkGKSLIQ 646
                 *******************************************************************433330...14444555555666665555556 PP

        PigN 223 rall.vqv 229
                 r+l+ +qv
  CCE30535.1 647 RSLTgIQV 654
                 66666665 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   3.1   2.6e-13   7.7e-10      20     237 ..      87     284 ..      54     309 .. 0.74

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 2.6e-13
                   TSHHH.HHHHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SSSEEETTTTEEEEEETTTTGGGGGCTT...S-HHHHHHHTHTTCEEEESE CS
  Phosphodiest  20 llpnl.aaLakegvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgNtfydrktgeyvvfvtededaprwwqg...epiwdtaakarglkaaalfw 112
                   l+p+l ++++++g+ +   ++ +Pt++ p+h++l+ Gly +   +     +++ + +  vf+++++  +  w++    p + + a   g+ ++a+++
    CCE30535.1  87 LAPFLrSRILEHGTFGV-SHTRVPTESRPGHVALIAGLYEDVSAVATGWKFNPVNFDS-VFNRSRHT-WS-WGSpdiLPMFKHGAVP-GR-VDAFMY 177
                   56666347889999999.9999999999999999999999999999866678888886.77777665.33.4553565666666666.66.888888 PP

                   .T.TTTSEBTTCT.SC.TBHHSBTCT.CSTTSCHHHHHHHHHHHHHHHCHTHSHHHHHCT.SSESEEEEEECCCHHHHHHH-TTSHHHHHHHHHHHH CS
  Phosphodiest 113 .p.gsevdystyyylvsetppryleddfnakvpledkvdkavlqtwldaafakvvlekel.ekpdlllvyleetDtvgHkfGpdspevedalrrvDk 206
                    p   ++  +         + +y+         + d+v++     ++++a+ ++ l k+l e+  +++++l ++Dt+gH++ p+s+e +++++ vD+
    CCE30535.1 178 ePgFEDFSQD-------ALRLDYW---------VFDHVKE-----FFAQAAVNQTLNKALrENQIVFFLHLLGLDTAGHSHRPYSKEYLNNIKVVDQ 253
                   5302223333.......3344444.........3444433.....334444444455555589999******************************* PP

                   HHHHHHHHHHHTTGTTTEEEEEEES---EEE CS
  Phosphodiest 207 aigdLlealderglsaetniilvSDHGmadv 237
                    ++++ +++++   ++ t++i ++DHGm+d 
    CCE30535.1 254 GVKEITSLVQKFYADDRTAFIFTADHGMSDW 284
                   ****************************985 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   1.8e-12   5.5e-09     208     292 ..     232     314 ..     144     324 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.8e-12
                 H......HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEEECS CS
   Sulfatase 208 r......qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekaprvsee 292
                 +       +  +yln ++ vD++++++   +++   +d t ++ft+Dhg s         +g + + +++ tr+P++ w++g  ap+v+++
  CCE30535.1 232 TaghshrPYSKEYLNNIKVVDQGVKEITSLVQKFYADDRTAFIFTADHGMSD--------WGSHGDGHPDNTRTPFITWGSGVAAPEVYDA 314
                 044444467789**************************************77........88888999******************98876 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0     2e-09     6e-06     114     196 ..     202     290 ..     191     339 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2e-09
                    --HHHHHHHHHHHH.CC.-SEEEEEE-HHHHHHHTT-H..HHHHHHHHHHHHHHHHHHTTS-T....TTEEEEEE-SSB--TTTSS... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 114 mkavevaekaldailsgkfdlvvvniknaDmvGHtgdl..eatiaaieaaDeavkeildaieq....vdgilvvtADHgnaedmvkrdk 196
                      a++ ++++l++ l ++  ++++++   D +GH+  +  +++ + i+ +D+ vkei++ +++    + + ++ tADHg  +   + d 
     CCE30535.1 202 FFAQAAVNQTLNKALRENQIVFFLHLLGLDTAGHSHRPysKEYLNNIKVVDQGVKEITSLVQKfyadDRTAFIFTADHGMSDWGSHGDG 290
                    4556666666666667767799**********99877533899**************988874333378899*******8876666443 PP

>> PsaF  Family of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   1.4    0.0029       8.7       3      33 ..       3      33 ..       1      39 [. 0.87
   2 !   10.1   0.0   0.00014      0.43      70     125 ..     348     403 ..     327     412 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0029
        PsaF  3 aksltlisitvmfflfliysfndlffysevk 33
                   lt+++ ++ f l+ iys+ d++f s + 
  CCE30535.1  3 VARLTFLATAIAFHLVYIYSIFDIYFVSPIV 33
                567999********************99765 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00014
        PsaF  70 ygiglkmptgkyylfplhsyqsspdnmargslnslasplslyvyeihnkknnvvtf 125
                 y ig ++p+     +pl    ++ d+ a+ sl +    l +y  + hnkk n + f
  CCE30535.1 348 YLIGTEFPANSVGELPLAYLSANNDEKAKASLANARGILEMYRVKEHNKKSNELRF 403
                 889999***********999999****************************98776 PP

>> Alk_phosphatase  Alkaline phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.5e-05     0.045     244     308 ..     214     281 ..     203     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
                      HHHTTSTT-EEEEEEETCHHHHHHTTTHH..HHHHHHHHHHHHHHHHHHHCHH...CTTEEEEEEESSEE CS
  Alk_phosphatase 244 klLsknekGFFLlVEGsrIDhaaHendav..galsEvvefdeAvkaalefakk...eketlvvvTaDHsh 308
                      k+L++n+  FFL   G  +D a+H  +++  + l+ ++ +d+ vk+ + + +k   +++t  + TaDH  
       CCE30535.1 214 KALRENQIVFFLHLLG--LDTAGHSHRPYskEYLNNIKVVDQGVKEITSLVQKfyaDDRTAFIFTADHGM 281
                      578999999*****99..566666666651167****************99999889***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4533.77
//
Query:       CCE30536.1  [L=450]
Description: uncharacterized protein CPUR_04384 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-31  108.8   0.0      3e-31  107.9   0.0    1.5  1  Csm1            Chromosome segregation protein Csm1/Pcs1
     0.0033   15.7   3.4     0.0047   15.2   3.4    1.1  1  EzrA            Septation ring formation regulator, EzrA
     0.0043   17.1   5.0       0.01   15.8   5.0    1.5  1  Rootletin       Ciliary rootlet component, centrosome cohesio
  ------ inclusion threshold ------
      0.028   14.5   4.0      0.055   13.5   4.0    1.5  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.034   14.0   0.1      0.082   12.8   0.0    1.6  1  RsgA_GTPase     RsgA GTPase
       0.25   10.2   6.2       0.44    9.4   6.2    1.3  1  Spc7            Spc7 kinetochore protein
          4    7.5   6.1         12    6.0   6.1    1.7  1  UPF0242         Uncharacterised protein family (UPF0242) N-te


Domain annotation for each model (and alignments):
>> Csm1  Chromosome segregation protein Csm1/Pcs1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   0.0   1.2e-34     3e-31       1      83 [.     344     431 ..     344     432 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 1.2e-34
        Csm1   1 qlkedlyedLtGlivrsvkedesedvfdciqtgrngtlhfkLaisk.....efeeaeisYvPlldesrdkellelLPdYLveeitFpr 83 
                 q+kedly dLtGli+r++++ ++e vfdciqtgrngtlhf+La+++     +++e +++Y P+ld++rd+el+ +LPdYLveeitF+r
  CCE30536.1 344 QAKEDLYGDLTGLIIRGTSQIDHEIVFDCIQTGRNGTLHFRLALEAgedpeNYHEIQFTYRPQLDSERDRELMTILPDYLVEEITFTR 431
                 689*******************************************999999999*******************************97 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   3.4   1.8e-06    0.0047     255     335 ..     213     293 ..     200     307 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSHHHHT--HHHHTTGGG-TTTS-G CS
        EzrA 255 eelekkieeilerlkeleledveeelktieeeidsLyddlekEveAkkeveknlkelkeklehlekqnkelkeeldrlkqs 335
                 e+ + ++++i  + +e+++e+++ +  +++   d+L   l++E +Ak ++ k+ +++ ++le+ ++++ el++ + +l  s
  CCE30536.1 213 EKRHVQLRDIGVKAAECNFERMKRQSMETAAASDNLIRELKAELAAKSNIVKQNEQIGRQLERSQANVGELERVIADLTAS 293
                 44455778888999***********************************************************99999876 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   5.0   4.1e-06      0.01      29     127 ..     199     303 ..     195     308 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.1e-06
   Rootletin  29 kkrcseleqrlle......ktselektkltlll..........ssareleeeesadleealakLeeErqrseklaqvnslLreqleearqaneaLtedl 111
                 +kr  +l ++ ++      +                       +++++ + e  a  ++++++L+ E    ++++++n+    qle ++++  +L++ +
  CCE30536.1 199 RKRSVDLTEQYHAlekrhvQLR----------DigvkaaecnfERMKRQSMETAAASDNLIRELKAELAAKSNIVKQNEQIGRQLERSQANVGELERVI 287
                 5555666666655322111122..........1222334444567778888888888****************************************** PP

   Rootletin 112 qkltkdwerlreeleq 127
                   lt+ +++++ e+++
  CCE30536.1 288 ADLTASLSKAKSEIQS 303
                 ***********99875 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   4.0   2.1e-05     0.055      25     116 ..     248     300 ..     200     312 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.1e-05
  CENP-F_leu_zip  25 kvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqe 116
                      + +L++el                                          +++ +++e++ ++l+ +q  v eLe++  +l+  l+++  e
      CCE30536.1 248 LIRELKAELA---------------------------------------AKSNIVKQNEQIGRQLERSQANVGELERVIADLTASLSKAKSE 300
                     2333333332.......................................2233445555555555555555555555555555555544333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.2e-05     0.082       3      87 ..     151     234 ..     149     250 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.2e-05
                  --S-EETTTTEES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTH CS
  RsgA_GTPase   3 eRknelvrpkvaNvdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktk 87 
                   R n+l  +++ N d +++v++ + +  +++ l+ ++ ++ ++  e v+    +Dl+e+ ++le+ + +l+++g++   ++ ++ 
   CCE30536.1 151 TRDNSLQPSNIQNPDAAVMVMGYS-DLGRERDLKNLIPTCSHNANEFVVRKRSVDLTEQYHALEKRHVQLRDIGVKAAECNFERM 234
                  799*********************.7778888999999999999999999999*************************9998743 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   6.2   0.00017      0.44     165     253 ..     205     304 ..     192     315 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00017
        Spc7 165 ldellpeleeekaeleeeleklqe........aaeelesidkeeLeelreelaelka...eieekkkelaelqeqleeleekieelkeqkseleeeiae 252
                 l+e +++le+++ +l++   k  e        ++ e ++   + ++el+ ela+ ++   + e+  ++l++ q+++ ele  i++l+++ s++++ei++
  CCE30536.1 205 LTEQYHALEKRHVQLRDIGVKAAEcnfermkrQSMETAAASDNLIRELKAELAAKSNivkQNEQIGRQLERSQANVGELERVIADLTASLSKAKSEIQS 303
                 344444444444443332222222333333214444444556666777777766554111445556999999************************997 PP

        Spc7 253 a 253
                  
  CCE30536.1 304 L 304
                 5 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.1    0.0046        12      83     178 ..     204     307 ..     178     311 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0046
     UPF0242  83 glktkeealeelqeeeeeLkee.....ldakeeelerlkeenqqLqekleaiae...dfeelkleleeqLaekqellqeyqetieeqrsvlekrqdqie 173
                 +l+++  ale++  + ++   +     ++ +++++ +      +L  +l+a  +   ++ ++  ++  qL++ q  + e+++ i ++ ++l k + +i+
  CCE30536.1 204 DLTEQYHALEKRHVQLRDIGVKaaecnFERMKRQSMETAAASDNLIRELKAELAaksNIVKQNEQIGRQLERSQANVGELERVIADLTASLSKAKSEIQ 302
                 344444444444444444444455555566666555555555555444443222223777777888888888888888888888888888888888888 PP

     UPF0242 174 qLesk 178
                  L  k
  CCE30536.1 303 SLSLK 307
                 88766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1080  (0.0602376); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3347.80
//
Query:       CCE30537.1  [L=25]
Description: uncharacterized protein CPUR_04385 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (25 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        70  (0.00390429); expected 358.6 (0.02)
Passed bias filter:                       62  (0.00345808); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 230.07
//
Query:       CCE30538.1  [L=333]
Description: uncharacterized protein CPUR_04386 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-77  258.0   0.0    1.1e-76  257.7   0.0    1.1  1  Arv1      Arv1-like family


Domain annotation for each model (and alignments):
>> Arv1  Arv1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.7   0.0   5.9e-81   1.1e-76       1     210 []      49     263 ..      49     263 .. 0.96

  Alignments for each domain:
  == domain 1  score: 257.7 bits;  conditional E-value: 5.9e-81
        Arv1   1 iCieCgepvksLytkYskg.......nirltkCknCkkvaDkYvEfdnvilfiDllLlkpqaYrHllfNtlereeekfekikslirlvillllfevylt 92 
                 iCieC++pvk+L+t+Ys +       nirlt+C+nC++++DkYvE+d+v+lfiDl+L+kpq+YrHll+Ntl+r+ ++f+  +s+irl++llllf+vylt
  CCE30538.1  49 ICIECRYPVKTLWTQYSGAsdkssghNIRLTVCRNCGRFCDKYVEHDFVVLFIDLVLIKPQVYRHLLHNTLMRDGDRFD--PSIIRLGVLLLLFDVYLT 145
                 8***************9999999********************************************************..****************** PP

        Arv1  93 wariekk.......sesessslsaqaivlesakelkqylfflvlalletlvfhlsillllslesslsa...lllkykkarlnalltalllssyaklfpi 181
                 warie+           +  +l++++iv+       qy ffl+l+ ++tl+fh+si++l+++++s+ +   ++++ +  r+n+++tall+ss++klfpi
  CCE30538.1 146 WARIEELsepallpGGGNLGNLAQRPIVV-------QYFFFLILCAMSTLAFHMSIRFLTCSSFSPLNalgIMPQHA--RPNSVSTALLVSSSTKLFPI 235
                 ****9999999*99999999*********.......**************************999988877777655..******************** PP

        Arv1 182 lmlIWeydltalalslikllvllsnveal 210
                 lm+IW+yd++a+a+  ++++v+++nveal
  CCE30538.1 236 LMVIWHYDVPAAAR-SLGWAVVANNVEAL 263
                 *************7.*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2480.67
//
Query:       CCE30539.1  [L=75]
Description: uncharacterized protein CPUR_04387 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-23   82.8   2.6      2e-23   82.6   2.6    1.0  1  ATP_synt_H  ATP synthase subunit H
  ------ inclusion threshold ------
      0.026   14.8   3.7      0.028   14.7   3.7    1.0  1  DUF3429     Protein of unknown function (DUF3429)
      0.033   14.2   0.0       0.13   12.3   0.0    1.8  2  DUF1075     Protein of unknown function (DUF1075)
       0.21   11.2   1.5       0.24   11.0   1.5    1.0  1  DUF4131     Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> ATP_synt_H  ATP synthase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   2.6   4.4e-27     2e-23       2      62 .]       7      67 ..       6      67 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 4.4e-27
                THHHHHHHHHHHTCSCSSS-S.TTHHHHHHHHHHHHHHHHHTCHHTSSSS-SS---XXSXX CS
  ATP_synt_H  2 ilvgtiifavlgvvatfvvpkgenrglirvlviltavccWlfWlcvYlaQmnPLiaPilsn 62
                +++g++i+avl++v ++ +pkg n+ l+r+++il++v+c+l+W++++laQ++PLi+P+++n
  CCE30539.1  7 VFIGLAIIAVLCAVSWLAAPKGANQVLWRSSLILSIVSCYLMWAITFLAQLHPLIEPKRNN 67
                89********************************************************985 PP

>> DUF3429  Protein of unknown function (DUF3429)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   3.7   6.3e-06     0.028      43      93 ..       7      56 ..       1      62 [. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.3e-06
     DUF3429 43 laYgavilSFlGGvhWglaleeegaakakrtrlalsvvpsllawlalllps 93
                +  g +i++ l++v W +a +  ++  + r+ l+ls+v + l w+ ++l +
  CCE30539.1  7 VFIGLAIIAVLCAVSWLAAPKGANQVLW-RSSLILSIVSCYLMWAITFLAQ 56
                566899**********999665555444.79**************998864 PP

>> DUF1075  Protein of unknown function (DUF1075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.3      0.21   9.4e+02      94     108 ..       7      21 ..       3      39 .. 0.76
   2 ?   12.3   0.0     3e-05      0.13      91     119 ..      44      72 ..      39      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.21
     DUF1075  94 iMialtilgciamvi 108
                 + i+l+i++ +++v 
  CCE30539.1   7 VFIGLAIIAVLCAVS 21 
                 569999999998875 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3e-05
     DUF1075  91 vsYiMialtilgciamvisgKravkrhes 119
                  +Y+M a+t l+ +  +i++Kr+  r+e 
  CCE30539.1  44 SCYLMWAITFLAQLHPLIEPKRNNLREEF 72 
                 6*********************9998875 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.5   5.3e-05      0.24       5      52 ..       4      57 ..       2      71 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.3e-05
     DUF4131  5 lalvllalllllllllllllrr.......rprrrvllllllllllallgfalrap 52
                +++v+++l++++ l+++ +l          +r   +l++  ++l +++  +l ++
  CCE30539.1  4 SYAVFIGLAIIAVLCAVSWLAApkganqvLWRSSLILSIVSCYL-MWAITFLAQL 57
                67889999999999999887779988764333333333333333.3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 604.76
//
Query:       CCE30540.1  [L=429]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-23   82.7   0.0    1.7e-11   44.0   0.0    2.4  2  Pkinase      Protein kinase domain
    1.4e-09   37.6   0.2      5e-05   22.7   0.0    2.9  2  Pkinase_Tyr  Protein tyrosine kinase
    4.8e-05   22.8   0.0     0.0058   16.0   0.0    2.3  2  Kinase-like  Kinase-like
  ------ inclusion threshold ------
       0.43   10.5   5.3       0.16   11.9   0.6    2.5  3  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0     9e-13     4e-09       1     132 [.      38     181 ..      38     186 .. 0.83
   2 !   44.0   0.0   3.8e-15   1.7e-11     134     264 .]     241     409 ..     227     409 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 9e-13
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS....CTTB--EEEEEEE............SSEEEEEEE--TTE CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk....hpnivrlyevfee............kdelylvleyvegg 83 
                 y+ + klG+G++++V  a++++t k vA+K+   + ++ ++      E+ il +++      ni +  + +               ++ +lv+  ++++
  CCE30540.1  38 YRIVDKLGHGAYSTVWLAIDEQTTKYVAIKVGTSDAESADQV-----EVDILTQIRqcppRGNIWESNRLLIPavldhfevtgpnGTHPCLVTPPARCN 131
                 67889*************************998888777665.....888888888733333555444444447888888899899999****999887 PP

                 BHHHHHH..HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase  84 eladlle..rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid 132
                  l dl e   +  ++ + a+++a+q++ +l+ +H++g  H Dl   N+L++
  CCE30540.1 132 -LRDLKEvaPDDLFQLDAARSLAAQLVIALSLIHDRGYAHGDLHLGNLLLQ 181
                 .777766667899************************************97 PP

  == domain 2  score: 44.0 bits;  conditional E-value: 3.8e-15
                 TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHH CS
     Pkinase 134 kgelKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpea 230
                 +++l ++DFG+a + e +s+++s+      ++PE l   +++ s ++D+WslG++++el++ + +f g k++ ++++   q  +     ++        
  CCE30540.1 241 EAMLTLSDFGVAFRPEDKSRFESY-TPLVLRPPEALseAKTPLSFASDIWSLGCVIFELFADSSLFDGFKDQITIQQVDIQGPMPPAWWEK-------- 330
                 56799************9966655.56789******6555777************************887777555555554444444443........ PP

                 TTS...............................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 231 sei...............................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                   +                                                + +++ll+ +l++ p++Rl ++ +l+++++
  CCE30540.1 331 --CgvrqewyeetgkplrgsskpytwrqrfqdwvqdprlgrkwetlaedeLDALIELLRCILAWSPSERLDISGVLRSDWM 409
                 ..33333444445889999****************************9988999************************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   7.2e-05      0.32       3     136 ..      40     180 ..      38     187 .. 0.56
   2 !   22.7   0.0   1.1e-08     5e-05     141     218 ..     243     317 ..     237     330 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.2e-05
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS....-BTTB--EEEEEE............SSSSEEEEEE--T CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl....khpnivkllgvct............keepllivteyvk 84 
                  + +klG+Ga+++V+ +  +    +++  Va+K+ +++a++ ++     e++i++++       ni +   + +            ++ + ++vt  ++
   CCE30540.1  40 IVDKLGHGAYSTVWLAIDE----QTTKYVAIKVGTSDAESADQV----EVDILTQIrqcpPRGNIWESNRLLIpavldhfevtgpNGTHPCLVTPPAR 129
                  5689***********9988....88999****997777666433....33333333100122233322211111111222233343444666665433 PP

                  TEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEE CS
  Pkinase_Tyr  85 gGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLl 136
                    +L++  +   ++ ++l+   s+a+q+  +++ ++++ + H dl   N Ll
   CCE30540.1 130 C-NLRDLKEVAPDDLFQLDAARSLAAQLVIALSLIHDRGYAHGDLHLGNLLL 180
                  2.33333333344466666677777777777777777777777777777776 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1.1e-08
                  EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH CS
  Pkinase_Tyr 141 vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftlgespypglkneevlekl 218
                  +  +sDfG+a +     e +++ e+ +p+   +pE+l+e k  ++ +sD+Ws G +++E+f   +s + g+k++ +++++
   CCE30540.1 243 MLTLSDFGVAFRP----EDKSRFESYTPLVLRPPEALSEAKtpLSFASDIWSLGCVIFELFAD-SSLFDGFKDQITIQQV 317
                  56799****9988....45566778899999********99889*****************94.4455666666666655 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0048        21      17      53 ..      41      77 ..      29      87 .. 0.80
   2 !   16.0   0.0   1.3e-06    0.0058     183     245 ..     244     300 ..     236     316 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0048
  Kinase-like 17 gellkkgdrsvvfevkdqetgeplavkvfllpseask 53
                 ++ l++g  s v+++ d++t +++a+kv+++ +e + 
   CCE30540.1 41 VDKLGHGAYSTVWLAIDEQTTKYVAIKVGTSDAESAD 77
                 566899999*********************9997654 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.3e-06
  Kinase-like 183 lmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwc 245
                  l l +f+  +r  +k +  s ++  + PpE l++       +kt  +++ d W lG vi+ + +
   CCE30540.1 244 LTLSDFGVAFRPEDKSRFeSYTPLVLRPPEALSE-------AKTPLSFASDIWSLGCVIFELFA 300
                  789999999999999999999************9.......7899***************8765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.34   1.5e+03       4      52 ..      43      92 ..      41     125 .. 0.72
   2 ?   11.9   0.6   3.5e-05      0.16     143     181 ..     140     181 ..     108     189 .. 0.65
   3 ?   -0.9   0.3      0.29   1.3e+03     115     115 ..     345     345 ..     231     399 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.34
                EE--.SSCEEEEEEETT.--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT- CS
         APH  4 elsggasnrtylvttpa.gryvlrrnpparaaeeirrevallrlLakagv 52
                 l++ga++ ++l  +++ ++yv   + +++a+   + ev++l+++++ ++
  CCE30540.1 43 KLGHGAYSTVWLAIDEQtTKYVAIKVGTSDAESADQVEVDILTQIRQCPP 92
                57889999999999999789999888888444444567778888877755 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.5e-05
                 C.HHHHHHHHHHHHHHHH--S....SS-EEEE-SS-SGGGEEEC CS
         APH 143 d.lleeleeqvlaalaallpg....elptvllHgDlhpgNllvd 181
                 + +l +l++  ++ laa l        +++  HgDlh+gNll++
  CCE30540.1 140 PdDLFQLDA--ARSLAAQLVIalslIHDRGYAHGDLHLGNLLLQ 181
                 234444444..222222222223334799*************97 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.29
                 B CS
         APH 115 l 115
                 l
  CCE30540.1 345 L 345
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3127.93
//
Query:       CCE30541.1  [L=151]
Description: uncharacterized protein CPUR_04389 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1100.29
//
Query:       CCE30542.1  [L=89]
Description: uncharacterized protein CPUR_04390 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 653.92
//
Query:       CCE30543.1  [L=440]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-20   73.2   0.0    8.4e-09   35.2   0.0    2.6  2  Pkinase      Protein kinase domain
    2.7e-08   33.4   0.0     0.0032   16.8   0.0    3.3  3  Pkinase_Tyr  Protein tyrosine kinase
    9.4e-05   21.9   0.1       0.12   11.7   0.0    2.9  3  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.6e-12   9.3e-09       1     132 [.      40     180 ..      40     191 .. 0.78
   2 !   35.2   0.0   1.4e-12   8.4e-09     134     264 .]     240     410 ..     227     410 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.6e-12
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.......HHHHHHHHHHHHHSCTTB--EEEEEEE....SSEEEEEEE--TTEBHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.......kkvlrEikilkklkhpnivrlyevfee....kdelylvleyveggeladl 88 
                 y+ + klG+Gsf++V  av+++t k vA+K+     ++ + +       + +   i+  +++  + i   +e         ++ +lv+  +++  l d+
  CCE30543.1  40 YRIVDKLGHGSFSTVWLAVDEQTTKYVAIKVGTSGADRVEIDvlshmaqSPLSDDIRETNRFLISPIFDHFE---IsgpnGTHPCLVTPPARCS-LRDV 134
                 67889*************************988887777665554333233334444444444444444444...2555689999*****9977.9998 PP

                 HH..HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase  89 le..rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid 132
                  e   +g ++ + a+++a+q++ +l+ lH++g  H D+   N+L++
  CCE30543.1 135 KEelCSGFFELDVARSLAAQLVMALSLLHKRGYAHGDIHLGNLLLQ 180
                 88666788************************************97 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 1.4e-12
                 TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT....SHH.. CS
     Pkinase 134 kgelKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg....etkek 226
                 +++l ++DFG+a + e +s++ s       ++PE     e++ + ++D+WslG++++ell+ +p+ ++   +      ++   ++l++lg     + e 
  CCE30543.1 240 EAMLTLSDFGVAFRPEDKSRFVS-YTPLILRPPEAYhgPETPLTFASDIWSLGCVIFELLSTCPLIHSLIPQP---DSVTA--ELLDMLGpmppAWWER 332
                 45699********9999884433.3456689999996666888*********************999433332...22222..4556666443433333 PP

                 .HHHTTS...........................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 227 lpeasei...........................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++                                                 + +++l k +l++ p +R+ ++e+l++ ++
  CCE30543.1 333 WEA---RskydhkvrllnglakpeelrrrfqysvqnprqkqetdtlaedeLDAVLSLFKAMLAWSPADRPDISEVLSSTWM 410
                 333...2444888899*******************************9988999************************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.3   4.2e-05      0.25       3     137 ..      42     180 ..      40     186 .. 0.65
   2 !   16.8   0.0   5.3e-07    0.0032     141     202 ..     242     301 ..     235     328 .. 0.81
   3 ?   -2.9   0.0      0.55   3.3e+03     231     256 ..     380     405 ..     363     407 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.2e-05
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHH..HHHTS-BTT...B--EEEEEE....SSSSEEEEEE--TTEBHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeak..imkklkhpn...ivkllgvct....keepllivteyvkgGdLlkf 91 
                  + +klG+G+f++V+ +  +    +++  Va+K+ +++a++ e + l + a+  +  +++  n   i  +         ++ + ++vt  ++  +L++ 
   CCE30543.1  42 IVDKLGHGSFSTVWLAVDE----QTTKYVAIKVGTSGADRVEIDVLSHMAQspLSDDIRETNrflISPIFDHFEisgpNGTHPCLVTPPAR-CSLRDV 134
                  5689**********99988....88999****99999998875544443321133334433312122222222233344455777776543.456665 PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLls 137
                   ++  +  ++l+   s+a+q+  +++ L+++ + H d+   N Ll+
   CCE30543.1 135 KEELCSGFFELDVARSLAAQLVMALSLLHKRGYAHGDIHLGNLLLQ 180
                  5555566778888888888888888888888888888888888876 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 5.3e-07
                  EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHHTTS CS
  Pkinase_Tyr 141 vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftlg 202
                  +  +sDfG+a + e++++      + +p+   +pE+ +  +  +t +sD+Ws G +++E+++++
   CCE30543.1 242 MLTLSDFGVAFRPEDKSR----FVSYTPLILRPPEAYHGPEtpLTFASDIWSLGCVIFELLSTC 301
                  567899999998844444....44567888899**999877779*****************987 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.55
                  BHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 231 peelyelmkkcweedpeeRptfselv 256
                   +++ +l k  ++ +p++Rp++se++
   CCE30543.1 380 LDAVLSLFKAMLAWSPADRPDISEVL 405
                  456777888889999999*9999986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0013       7.7      14      51 ..      40      77 ..      31      93 .. 0.80
   2 ?    0.1   0.0     0.068     4e+02     144     178 ..     147     180 ..     134     188 .. 0.86
   3 !   11.7   0.0     2e-05      0.12     183     245 ..     243     299 ..     237     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0013
  Kinase-like 14 lvrgellkkgdrsvvfevkdqetgeplavkvfllpsea 51
                 +  ++ l++g +s v+++ d++t +++a+kv+++ ++ 
   CCE30543.1 40 YRIVDKLGHGSFSTVWLAVDEQTTKYVAIKVGTSGADR 77
                 445677999***********************998764 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.068
  Kinase-like 144 iarlllTlqlirlaanLqakglvhgkftvdnllld 178
                  +ar  l +ql+     L+++g  hg+++  nlll+
   CCE30543.1 147 VARS-LAAQLVMALSLLHKRGYAHGDIHLGNLLLQ 180
                  5665.5599999999*************9999986 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 2e-05
  Kinase-like 183 lmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwc 245
                  l l +f+  +r  +k +  s ++  + PpE            +t  t++ d W lG vi+ + +
   CCE30543.1 243 LTLSDFGVAFRPEDKSRFvSYTPLILRPPEAYHG-------PETPLTFASDIWSLGCVIFELLS 299
                  6788999888888888776999999999998665.......6899***************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3193.74
//
Query:       CCE30544.1  [L=448]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-23   81.4   0.0    2.2e-11   43.6   0.0    2.1  2  Pkinase      Protein kinase domain
    1.8e-09   37.3   0.1    0.00033   20.0   0.0    2.8  2  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.018   14.4   0.0        1.1    8.6   0.0    2.1  2  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   8.5e-13   5.1e-09       1     132 [.      38     178 ..      38     186 .. 0.81
   2 !   43.6   0.0   3.7e-15   2.2e-11     137     264 .]     241     409 ..     231     409 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 8.5e-13
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH......HHHHHH.HHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH. CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke......kkvlrE.ikilkklk.hpnivrlyevfeekdelylvleyveggeladlle. 90 
                 y+ + klG+G++++V  a++++t k vA+K+   + ++ + +      ++ l+E i+  +++  hp + ++  +  + ++ +lv+  ++++ l d+ e 
  CCE30544.1  38 YRIVDKLGHGAYSTVWLAIDEQTTKYVAIKVGTSDADQVEFDilshmaQRPLSEnIRKTNRMLiHPVLDHFEVSGPNGTHSCLVTPPARCN-LRDAKEv 135
                 67889**************************999999988888875554444442333333333554444444445599********9988.8877777 PP

                 .HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase  91 .rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid 132
                  r g l+ + a+ +a+q++ +l+ +H+ g  H Dl   N+L++
  CCE30544.1 136 aRYGLLQLDAARCLAAQLAMALSIIHNGGYAHGDLHLGNLLLQ 178
                 68899************************************97 PP

  == domain 2  score: 43.6 bits;  conditional E-value: 3.7e-15
                 EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTT CS
     Pkinase 137 lKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpease 232
                 l ++DFG+a + e +s   +     e ++PE     +++ +  +D+WslG++++ell+++p+f+  + ++   +++ q + +l ++   + ++++    
  CCE30544.1 241 LTLCDFGVAFRPEDKS-RFEAYTPLELRPPEAFfePKTPLTLFSDIWSLGCVIFELLANRPLFHVYSPEQ--DQITAQQVDMLGLMPsAWWKNWEA--- 333
                 789********99998.555666789*******8667888***********************9443333..444444344444443333333333... PP

                 S............................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 233 i............................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                                               e ++ ll+ +l++ p++Rl ++ +l+++++
  CCE30544.1 334 RtkwydekgrplgespdpytlktrfrdcvqdprlkrgwntlaedeLEALTTLLRCMLAWSPSERLDISGVLRSDWM 409
                 3444777899********************************9998999*************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1     4e-06     0.024       3     137 ..      40     178 ..      38     183 .. 0.71
   2 !   20.0   0.0   5.5e-08   0.00033     142     203 ..     241     298 ..     236     335 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4e-06
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHH..HH...HHHHTS-BTTB--EEEEEE....SSSSEEEEEE--TTEBHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelle..ea...kimkklkhpnivkllgvct....keepllivteyvkgGdLlkf 91 
                  + +klG+Ga+++V+ +  +    +++  Va+K+ +++a++ e + l +  +    + ++k++   i  +l        ++ + ++vt  +   +L++ 
   CCE30544.1  40 IVDKLGHGAYSTVWLAIDE----QTTKYVAIKVGTSDADQVEFDILSHmaQRplsENIRKTNRMLIHPVLDHFEvsgpNGTHSCLVTPPA-RCNLRDA 132
                  5689************988....89999******99999887433332102201122333333333333333333334555578887765.5578888 PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLls 137
                   +  +   l+l+   ++a+q+A +++ +++  + H dl   N Ll+
   CCE30544.1 133 KEVARYGLLQLDAARCLAAQLAMALSIIHNGGYAHGDLHLGNLLLQ 178
                  77777899999********************************997 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 5.5e-08
                  EEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHHTTSS CS
  Pkinase_Tyr 142 vkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftlge 203
                    ++DfG+a +     e +++ ea +p++  +pE+++e k  +t  sD+Ws G +++E++   +
   CCE30544.1 241 LTLCDFGVAFRP----EDKSRFEAYTPLELRPPEAFFEPKtpLTLFSDIWSLGCVIFELLA--N 298
                  679*****9988....5566778999***********999889****************87..4 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.006        36      17      55 ..      41      79 ..      29      99 .. 0.79
   2 ?    8.6   0.0   0.00018       1.1     186     243 ..     244     295 ..     237     306 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.006
  Kinase-like 17 gellkkgdrsvvfevkdqetgeplavkvfllpseaskkd 55
                 ++ l++g  s v+++ d++t +++a+kv+++ ++  + d
   CCE30544.1 41 VDKLGHGAYSTVWLAIDEQTTKYVAIKVGTSDADQVEFD 79
                 566899999********************9988765555 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00018
  Kinase-like 186 ggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyri 243
                   +f+  +r  +k +     +++ P El+   + +++  kt  t   d W lG vi+ +
   CCE30544.1 244 CDFGVAFRPEDKSR----FEAYTPLELRPPEAFFEP--KTPLTLFSDIWSLGCVIFEL 295
                  55555555555555....467777777777777777..889999************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3488.63
//
Query:       CCE30545.1  [L=481]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.2e-21   74.4   0.0    1.8e-09   37.3   0.0    2.1  2  Pkinase      Protein kinase domain
    6.8e-10   38.7   0.1     0.0001   21.7   0.0    2.9  2  Pkinase_Tyr  Protein tyrosine kinase
     0.0034   16.8   0.1       0.31   10.3   0.0    2.4  3  Kinase-like  Kinase-like
  ------ inclusion threshold ------
      0.089   12.7   0.1       0.26   11.2   0.1    1.8  1  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   2.1e-12   9.5e-09       1     132 [.      38     178 ..      38     188 .. 0.84
   2 !   37.3   0.0   4.1e-13   1.8e-09     137     264 .]     241     409 ..     229     409 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 2.1e-12
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.......HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH. CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.......kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladlle. 90 
                 y+ + klG+G++++V  a++++t k vA+K+   + ++ + +       + ++  i   +++  hp i ++  +  + ++ +lv+  ++++ l d+   
  CCE30545.1  38 YRIVDKLGHGAYSTVWLAMDEQTTKYVAIKVGTSDADQVEFDvlsqitrSPLRGNIWKTNRMLiHPVIDHFEVSGPNGTHSCLVTPPARCN-LRDVKGe 135
                 67889**************************99999998888886554333344444444444588777777777789***********88.8888886 PP

                 .HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase  91 .rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid 132
                   +++l+ + a+++++q++ +l+ +H++g  H Dl   N+L++
  CCE30545.1 136 gCHRILQLDAARSLTAQLAIALSLIHERGYAHGDLHLGNLLLQ 178
                 66777************************************97 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 4.1e-13
                 EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT....SHH...HH CS
     Pkinase 137 lKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg....etkeklpe 229
                 l ++DFG+a + + +s   +     e ++PE     e++ + ++D+WslG++ +el+++ p+f g  +++  e+++ q    +++lg         +++
  CCE30545.1 241 LTLCDFGVAFRPKDKS-RFEAYTPLELRPPEAFfePESPLTFASDIWSLGCVAFELFANLPLFFGYISEQ--EHITAQ---QVRLLGpmppA---WWKR 330
                 88*********99998.555666789*******9777889************************555544..455555...46777743332...3344 PP

                 HTTS............................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 230 asei............................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++                                               + ++ ll ++l + p++Rl ++ +l ++++
  CCE30545.1 331 WEARtkwydeegrplsgsskpytlkrrfqtcvqdprlergwdtfaedeLDALITLLLSMLVWSPSERLDISGVLGSDWM 409
                 4444667888999********************************998888999999***************9999997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   1.3e-05     0.056       3     137 ..      40     178 ..      38     185 .. 0.71
   2 !   21.7   0.0   2.3e-08    0.0001     141     201 ..     240     298 ..     234     329 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHH.HHHHHH.TS.......-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelle.eakimk.kl.......khpnivkllgvct.keepllivteyvkgGdLlk 90 
                  + +klG+Ga+++V+ +  +    +++  Va+K+ +++a++ e + l +   + ++ ++        hp ++    v   ++ + ++vt  +   +L++
   CCE30545.1  40 IVDKLGHGAYSTVWLAMDE----QTTKYVAIKVGTSDADQVEFDVLSQiTRSPLRgNIwktnrmlIHP-VIDHFEVSGpNGTHSCLVTPPA-RCNLRD 131
                  5689**********99888....89999*****99999988644443321111221221000001233.3333333333555577777655.568999 PP

                  HHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr  91 fLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLls 137
                     +  ++ l+l+   s+++q+A +++ ++++ + H dl   N Ll+
   CCE30545.1 132 VKGEGCHRILQLDAARSLTAQLAIALSLIHERGYAHGDLHLGNLLLQ 178
                  888889999***********************************997 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 2.3e-08
                  EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 141 vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftl 201
                  +  ++DfG+a +     + +++ ea +p++  +pE+++e +  +t +sD+Ws G + +E+f +
   CCE30545.1 240 LLTLCDFGVAFRP----KDKSRFEAYTPLELRPPEAFFEPEspLTFASDIWSLGCVAFELFAN 298
                  5679*****9988....5566778999***********988889****************985 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0067        30      17      51 ..      41      75 ..      29      91 .. 0.80
   2 ?   -3.6   0.1       1.2   5.4e+03     141     177 ..     141     177 ..     135     180 .. 0.76
   3 !   10.3   0.0   6.9e-05      0.31     183     245 ..     241     297 ..     234     317 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0067
  Kinase-like 17 gellkkgdrsvvfevkdqetgeplavkvfllpsea 51
                 ++ l++g  s v+++ d++t +++a+kv+++ ++ 
   CCE30545.1 41 VDKLGHGAYSTVWLAMDEQTTKYVAIKVGTSDADQ 75
                 566899999********************988765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.2
  Kinase-like 141 letiarlllTlqlirlaanLqakglvhgkftvdnlll 177
                  l+  a   lT+ql      ++++g  hg+++  nlll
   CCE30545.1 141 LQLDAARSLTAQLAIALSLIHERGYAHGDLHLGNLLL 177
                  5555667889988766677789999999999988887 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 6.9e-05
  Kinase-like 183 lmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwc 245
                  l l +f+  +r ++k +     +++ P El+   + +++  +   t++ d W lG v++ + +
   CCE30545.1 241 LTLCDFGVAFRPKDKSR----FEAYTPLELRPPEAFFEP--ESPLTFASDIWSLGCVAFELFA 297
                  56778888888888888....456666666666666666..67789*************8764 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   5.8e-05      0.26     147     181 ..     148     178 ..     122     186 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.8e-05
                 HHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC CS
         APH 147 eleeqvlaalaallpgelptvllHgDlhpgNllvd 181
                  l++  la  + l +   +++  HgDlh+gNll++
  CCE30545.1 148 SLTA-QLAIALSLIH---ERGYAHGDLHLGNLLLQ 178
                 3333.3555666666...899************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 3986.81
//
Query:       CCE30546.1  [L=231]
Description: uncharacterized protein CPUR_04394 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1887.09
//
Query:       CCE30547.1  [L=374]
Description: uncharacterized protein CPUR_04395 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-14   52.9   0.0    2.1e-13   50.3   0.0    2.2  2  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.11     2e+03       2      21 ..      51      70 ..      50     104 .. 0.80
   2 !   50.3   0.0   1.2e-17   2.1e-13     123     264 .]     129     370 ..     108     370 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.11
                EEEEEEEEESSEEEEEEEET CS
     Pkinase  2 ekleklGeGsfGkVykavek 21
                +++ klG G  ++V  a + 
  CCE30547.1 51 KTIAKLGFGRGSTVWLAENL 70
                67889********9988753 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 1.2e-17
                 S-SGGGEEEET.......................................TTE..EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHH CS
     Pkinase 123 DlKpeNiLide.......................................kge..lKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvD 179
                 D+K++NiL +                                        +g    +++DF  +  l  +    t  + +  Y+APEv+ + + s kvD
  CCE30547.1 129 DIKDDNILTSPmtesdikpfanhckasaqpryigkdgrvtyashdeiigiRGSpwPRLADFNTCFPLLPDDFcSTAPIQSDVYRAPEVILGIPWSYKVD 227
                 666666666633566666666666666666666666655555544444442235578999999988877776678889999****************** PP

                 HHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.......SHH...HHHTTS...................................... CS
     Pkinase 180 vWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.......etkeklpeasei...................................... 233
                 +W lG+++++l+ g+ +f g+ g++  +    +l +++ +lg       + +        +                                      
  CCE30547.1 228 IWNLGLMMWSLVQGTDLFDGSVGDDGEYDAHVHLAQMITTLGrpppllvKRERL------Crenkqsdlvspkgkecetmneywggpffdddgcmirkd 320
                 *******************99888755555555677777777766665422222......24444458899999999********************** PP

                 ...................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 ...................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                    + ++++ll +++k+ p++R +a+ell+hp++
  CCE30547.1 321 likegkmvpqllteltnedKTQFLRLLGDMIKWLPERRKSAAELLKHPFF 370
                 ******************999****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2907.76
//
Query:       CCE30548.1  [L=292]
Description: related to DRPLA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-11   44.4   7.5     0.0034   17.5   0.4    4.5  4  Myb_DNA-binding  Myb-like DNA-binding domain
      1e-09   38.5  11.2    0.00051   20.2   0.1    4.5  5  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.4   3.8e-07    0.0034       3      44 ..      19      58 ..      17      60 .. 0.88
   2 ?    3.0   0.0     0.013   1.2e+02      11      30 ..      71      91 ..      67      96 .. 0.71
   3 !   17.0   0.0   5.7e-07    0.0051       7      42 ..     165     200 ..     158     204 .. 0.77
   4 !    7.8   0.6   0.00043       3.9       2      31 ..     208     238 ..     207     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.8e-07
                     SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding  3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44
                      Wt +Ed lL+++      +W++I +r+ gRte +c+ r r+
       CCE30548.1 19 TWTVDEDALLIRLKSS-SASWEEITDRI-GRTEYSCKIRCRR 58
                     7***********9877.567********.6*******99886 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.013
                     HHHHHHHHHTTC.HHHHHHHH CS
  Myb_DNA-binding 11 lLleavkkhGnr.WkkIaerl 30
                      L+++   h ++ W+k+a+++
       CCE30548.1 71 ELARLYDSHKEQmWTKVANKM 91
                     4566666666445*****998 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 5.7e-07
                      HHHHHHHHHHHHHTTCHHHHHHHHT..SS-HHHHHHHH CS
  Myb_DNA-binding   7 eEdelLleavkkhGnrWkkIaerlg..gRtekqcrsrw 42 
                      eE  lL+++ +++   W+ I+ +++   Rt+k+c +++
       CCE30548.1 165 EEAILLAKYRANLK--WNDISTYFNfpERTPKACELHY 200
                      55555677777755..******999999*********9 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.00043
                      SSSBHHHHHHHHHHHHHHT.TCHHHHHHHHT CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhG.nrWkkIaerlg 31 
                      g W++e +++L ++ +++  + W  I e + 
       CCE30548.1 208 GGWSPELQNKLCKVYERLKqEMWIPIGEAMS 238
                      56***************99888988888775 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   3.1e-06     0.028       1      41 [.      20      58 ..      20      67 .. 0.88
   2 !    4.5   0.1    0.0045        40       5      28 ..      68      92 ..      65     122 .. 0.81
   3 !   20.2   0.1   5.6e-08   0.00051       1      40 [.     161     201 ..     161     207 .. 0.91
   4 ?    3.1   1.2     0.012   1.1e+02       1      28 [.     210     238 ..     210     251 .. 0.83
   5 ?   -3.4   0.0       1.3   1.2e+04      27      41 ..     274     288 ..     270     290 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.1e-06
  Myb_DNA-bind_6  1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwkn 41
                    Wt++Ed +L++l +     W++I + ++ Rt  +c+ r ++
      CCE30548.1 20 WTVDEDALLIRLKSSS-ASWEEITDRIG-RTEYSCKIRCRR 58
                    ************8875.79*********.*******99766 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0045
  Myb_DNA-bind_6  5 EdeiLlklveky.gndWknIaealn 28
                    ++ +L++l+  + ++ W+++a+ ++
      CCE30548.1 68 DKNELARLYDSHkEQMWTKVANKMS 92
                    5779********5579*****9885 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 5.6e-08
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealn..rRtpkqcfdrwk 40 
                     W+  E+ iLl  ++++  +W+ I++ +n   Rtpk+c  ++ 
      CCE30548.1 161 WSGHEEAILLAKYRAN-LKWNDISTYFNfpERTPKACELHYS 201
                     8999999**9999987.8*********999*******99885 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.012
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygn.dWknIaealn 28 
                     W++e + +L k++e+  +  W +I ea++
      CCE30548.1 210 WSPELQNKLCKVYERLKQeMWIPIGEAMS 238
                     88999999999999998746****99987 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 1.3
  Myb_DNA-bind_6  27 lnrRtpkqcfdrwkn 41 
                     l+ R p q   +w+n
      CCE30548.1 274 LAPREPGQTTKEWLN 288
                     445888888889988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       897  (0.0500307); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2300.50
//
Query:       CCE30549.1  [L=225]
Description: related to DRPLA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-06   27.6   0.2     0.0036   17.5   0.0    2.7  2  Myb_DNA-binding  Myb-like DNA-binding domain
      8e-05   22.8   0.1     0.0034   17.6   0.0    2.5  2  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     4e-07    0.0036       4      42 ..      71     110 ..      69     114 .. 0.75
   2 !    7.5   0.0   0.00053       4.7       2      29 ..     118     146 ..     117     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4e-07
                      SBHHHHHHH.HHHHHHHTTCHHHHHHHHT..SS-HHHHHHHH CS
  Myb_DNA-binding   4 WteeEdelL.leavkkhGnrWkkIaerlg..gRtekqcrsrw 42 
                      W+ +E+ +L +++ +++   W+ I+  ++  +R+ k+c+ ++
       CCE30549.1  71 WSGDEEAILlAKYRANLK--WSDISACFPgqTRSQKACKCHY 110
                      555555555266666655..*********999*******998 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00053
                      SSSBHHHHHHHHHHHHHHT.TCHHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhG.nrWkkIaer 29 
                      g W++e +++L +a + +  + W  I e 
       CCE30549.1 118 GGWSPELQNKLCKAYESLKrEMWIPIGEA 146
                      56*************99986668777665 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.8e-07    0.0034       1      39 [.      71     110 ..      71     126 .. 0.89
   2 ?    2.8   0.1     0.015   1.4e+02       1      32 [.     120     158 ..     120     163 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.8e-07
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealn..rRtpkqcfdrw 39 
                     W+ +E+ iLl  ++++  +W+ I+ +++   R++k+c+ ++
      CCE30549.1  71 WSGDEEAILLAKYRAN-LKWSDISACFPgqTRSQKACKCHY 110
                     999**********998.8*********779*******9877 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.015
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygn.dWknIaealn......rRtp 32 
                     W++e + +L k +e   +  W +I ea++       + +
      CCE30549.1 120 WSPELQNKLCKAYESLKReMWIPIGEAMSvswitaEKMH 158
                     55555566666666655456****999975555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1778.07
//
Query:       CCE30550.1  [L=252]
Description: uncharacterized protein CPUR_04398 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2156.62
//
Query:       CCE30551.1  [L=1746]
Description: uncharacterized protein CPUR_04399 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-09   36.2   0.0    8.8e-09   35.3   0.0    1.3  1  RVT_2            Reverse transcriptase (RNA-dependent DNA pol
      6e-05   22.8   0.3     0.0002   21.1   0.3    1.9  1  gag_pre-integrs  GAG-pre-integrase domain
      8e-05   22.8   0.0    0.00024   21.3   0.0    1.8  1  rve              Integrase core domain


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.5e-12   8.8e-09      16     176 ..    1256    1423 ..    1244    1442 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.5e-12
       RVT_2   16 gsrWvftkkkddlkevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaae....eelvvhqldvdsafLnae..ldeevyvkqPpGfeid 106 
                   sr v   k ++ +e   k+rlv+qG+s   g+++  + +P i+  s rL+ ala +    +e  +   d+  a+ +a+  l+ +vy + P      
  CCE30551.1 1256 RSRIVREVKGKATDEPYEKSRLVIQGHSDE-GKEFLLTQSPTIQRASQRLVAALAPTlldrYEIELAIRDITQAYTQAQtlLNRTVYAVLPLELRHL 1351
                  567788889999999999*********975.889********************974322256777788******9987446788************ PP

       RVT_2  107 reeekvykLnkslyGlkqapllWnek.idkvLkklgferseaesGlyvrgtgegk.livalyvddlliagsd 176 
                    e+  +++ + lyG+  +++ W+ +   +  +kl +  s+    l + ++ ++    v+l  dd li g+ 
  CCE30551.1 1352 YGEDALMQVLRPLYGMAESGTHWFATyFRHHREKLLMMTSTYDPCLLICSDDNNTfGCVGLQTDDTLILGDR 1423
                  ***********************87626677788888999999999999988888569********998754 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.3   3.4e-08    0.0002      19      64 ..     816     864 ..     805     865 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.4e-08
  gag_pre-integrs  19 knkssinlWHrRLGHpsfsrlkkLfk.......kgllpglkisk.sevCeaCql 64 
                       ++++i+  HrR+GHps+ rl k+ +       +++++     k  e+C+ Cql
       CCE30551.1 816 LSETQIRQLHRRFGHPSVARLAKVLEragedanRDAIA-----KiTEHCHQCQL 864
                      468999*******************9554333333333.....34689****98 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     4e-08   0.00024       9     117 ..     887     990 ..     881     992 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4e-08
         rve   9 qvDvtvvripdgggkayllvvvddfsrlilaealsde..mdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdn 105
                  vDv++++    g    +l+vvd+++ +  a +l  +  ++ +++ al e+ ++ + g  p+ v+ D g+ ++s +fr +++ + i+ +  ++   ++ 
  CCE30551.1 887 VVDVMHLD----G--RPVLHVVDAATSFQAARFLEPQkqKARDVWNALRECWIDTYLGP-PDWVVHDAGKNFASAEFRHLARLMAINTDEVPVEAHHSI 978
                 56666665....2..34677899999999999998775456667777777778877777.*************************************** PP

         rve 106 GkvErfhrtlkd 117
                 GkvEr h+ l++
  CCE30551.1 979 GKVERYHGPLRR 990
                 ********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.47
# Mc/sec: 11077.50
//
Query:       CCE30552.1  [L=287]
Description: uncharacterized protein CPUR_04400 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2329.79
//
Query:       CCE30553.1  [L=194]
Description: uncharacterized protein CPUR_04401 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1443.01
//
Query:       CCE30554.1  [L=126]
Description: uncharacterized protein CPUR_04402 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 977.10
//
Query:       CCE30555.1  [L=74]
Description: uncharacterized protein CPUR_04403 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.034   13.5   0.0      0.034   13.5   0.0    1.0  1  Pkinase       Protein kinase domain
       0.11   12.1   0.2       0.11   12.0   0.2    1.1  1  Angiomotin_C  Angiomotin C terminal
       0.12   12.3   0.6       0.16   11.8   0.6    1.2  1  PsbN          Photosystem II reaction centre N protein (psbN)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.7e-06     0.034     227     264 .]      33      70 ..       7      70 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.7e-06
                 .HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 227 lpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++  ++ ++++++l+ +++++ p++R ta+ell++p++
  CCE30555.1  33 TELTEKDKNQLLNLVADMIQWLPEHRKTAAELLKDPFF 70 
                 3444555899**************************98 PP

>> Angiomotin_C  Angiomotin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   1.9e-05      0.11      58      84 ..      26      53 ..      16      64 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.9e-05
  Angiomotin_C 58 lsasaLqeeLrekE.EriLaleadmvkW 84
                   +++ L  eL ek+  ++L+l adm++W
    CCE30555.1 26 KTLPHLLTELTEKDkNQLLNLVADMIQW 53
                  6889999*****97469*********** PP

>> PsbN  Photosystem II reaction centre N protein (psbN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   2.7e-05      0.16      32      43 .]      63      74 .]      60      74 .] 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.7e-05
        PsbN 32 keLaDPFedHED 43
                + L+DPF dHED
  CCE30555.1 63 ELLKDPFFDHED 74
                569********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 548.42
//
Query:       CCE30556.1  [L=444]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-21   75.2   0.0    1.2e-09   38.0   0.0    2.6  2  Pkinase      Protein kinase domain
    1.6e-07   30.9   0.6      0.006   15.9   0.0    3.3  3  Pkinase_Tyr  Protein tyrosine kinase
    1.8e-06   27.5   0.1    0.00041   19.8   0.0    2.8  3  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.4e-12   1.5e-08       1     132 [.      50     190 ..      50     200 .. 0.77
   2 !   38.0   0.0     2e-13   1.2e-09     135     264 .]     251     422 ..     245     422 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.4e-12
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.......HHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHH. CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.......kkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladlle. 90 
                 y+ ++klG+G+f++V  av+++t k vA+K+   + ++++         ++v + i+  k+l  p ++  +e      ++ +lv+  +++  l ++   
  CCE30556.1  50 YRIVHKLGHGTFSTVWLAVDEKTTKYVAIKIGTADADRNEISilaqmaqRSVSNNIREQKTLLIPAVLDQFELSGPsGNHPCLVTLPARCS-LREAKGa 147
                 67889**************************999988876665554444444444444444555555555554444677888888777766.6665554 PP

                 .HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase  91 .rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid 132
                  + g ++ + a+++a+q++ +++ +H++g  H Dl   N++++
  CCE30556.1 148 aEFGLFKIDVARSLAAQLIMAVSLVHDRGYAHGDLHLGNLFLQ 190
                 45677***********************************997 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 2e-13
                 TEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT....SHH... CS
     Pkinase 135 gelKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg....etkekl 227
                 + l+++DFG+a +   +s+++s+      ++PE l   e++ + ++D+WslG++++ell  ++++ g     + +  ++q    l++ g     +   +
  CCE30556.1 251 ARLMLGDFGVAFRPGDKSRFESY-TPLVLRPPEALfePETPLTFASDIWSLGCVIFELLGHRTLLDGYFLAPQDYITAQQ----LDLQGpmppAW---W 341
                 5699********99999966655.56789******9777999**********************9965555544444444....33333433422...2 PP

                 HHHTTS............................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 228 peasei............................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++++e                                                +++ll+++l+++p++R+ ++++l+++++
  CCE30556.1 342 KKWEERpkwyseegkplspacdvwswertfkewvqdsrqewnmgtladdeLLVLLKLLRSMLAWKPSERPDISNVLKSEWV 422
                 22222244477799*********************************76555678999*********************96 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   2.4e-05      0.15       3      59 ..      52     106 ..      50     194 .. 0.57
   2 !   15.9   0.0     1e-06     0.006     143     199 ..     254     308 ..     245     350 .. 0.86
   3 ?   -0.9   0.2      0.13   7.9e+02     185     206 ..     361     382 ..     342     422 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.4e-05
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHH..HHHHHHTS- CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelle..eakimkklk 59 
                  + +klG+G+f++V+ +  +    k++  Va+K+ +++a+++e + l +  + ++ ++++
   CCE30556.1  52 IVHKLGHGTFSTVWLAVDE----KTTKYVAIKIGTADADRNEISILAQmaQRSVSNNIR 106
                  6789***********9988....89999******9999988754443311333444444 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1e-06
                  EE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 143 kisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEif 199
                   ++DfG+a +       +++ e+ +p+   +pE+l+e +  +t +sD+Ws G +++E++
   CCE30556.1 254 MLGDFGVAFRP----GDKSRFESYTPLVLRPPEALFEPEtpLTFASDIWSLGCVIFELL 308
                  57888888776....345566778899999******998889***************97 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.13
                  HHHHHHHHHHHHHHHTTSSGTT CS
  Pkinase_Tyr 185 ksDvWsfGvllwEiftlgespy 206
                  + DvWs+  +  E ++ +++ +
   CCE30556.1 361 ACDVWSWERTFKEWVQDSRQEW 382
                  5666666555555555444433 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0044        26      15      54 ..      51      88 ..      40     108 .. 0.74
   2 ?   -0.9   0.0      0.13   7.9e+02     145     178 ..     158     190 ..     152     196 .. 0.86
   3 !   19.8   0.0   6.9e-08   0.00041     180     243 ..     250     307 ..     242     312 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0044
  Kinase-like 15 vrgellkkgdrsvvfevkdqetgeplavkvfllpseaskk 54
                   ++ l++g +s v+++ d++t +++a+k+++  ++  ++
   CCE30556.1 51 RIVHKLGHGTFSTVWLAVDEKTTKYVAIKIGTADAD--RN 88
                 3355688999********************997663..33 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.13
  Kinase-like 145 arlllTlqlirlaanLqakglvhgkftvdnllld 178
                  ar  l +qli  +   +++g  hg+++  nl+l+
   CCE30556.1 158 ARS-LAAQLIMAVSLVHDRGYAHGDLHLGNLFLQ 190
                  444.669*******************99999986 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 6.9e-08
  Kinase-like 180 kgglmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyri 243
                  + +lmlg+f+  +r g+k +  s ++  + PpE l +        +t  t++ d W lG vi+ +
   CCE30556.1 250 EARLMLGDFGVAFRPGDKSRFeSYTPLVLRPPEALFE-------PETPLTFASDIWSLGCVIFEL 307
                  568******************999*********9988.......5899***************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3406.89
//
Query:       CCE30557.1  [L=289]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-13   49.8   0.1    1.3e-11   44.4   0.0    2.1  2  Pkinase      Protein kinase domain
    8.4e-05   22.0   0.2    0.00022   20.6   0.0    1.8  3  Pkinase_Tyr  Protein tyrosine kinase
     0.0023   17.3   0.0     0.0037   16.6   0.0    1.2  1  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.1     0.007        42     110     132 ..       2      24 ..       1      32 [. 0.91
   2 !   44.4   0.0   2.1e-15   1.3e-11     134     264 .]      84     256 ..      79     256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.007
                 HHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase 110 gleylHskgiiHrDlKpeNiLid 132
                 +l+ +H++g  H Dl   N++++
  CCE30557.1   2 ALSLIHDRGYAHGDLHLGNLFLQ 24 
                 7999****************997 PP

  == domain 2  score: 44.4 bits;  conditional E-value: 2.1e-15
                 TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.....SHH. CS
     Pkinase 134 kgelKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.....etke 225
                 +++l ++DFG+a +   +s+++s++     ++PE l   e++ + ++D+WslG++++ell+ + + sg   +++ e+ + q       l+      +  
  CCE30557.1  84 EAMLILSDFGVAFRSGDKSRFKSYT-PLVLRPPESLfePETPLTFASDIWSLGCVIFELLAHRSLISGYFLETQDEMTAAQ-----VYLQgpmppAWWR 176
                 566889********99999776664.6788******9777999************************55444434444444.....2222343333333 PP

                 ..HHHTTS............................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 226 klpeasei............................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 k+++                                                 +e+ +ll+++l+++p++Rl + ++l+++++
  CCE30557.1 177 KWEK---RsvfydeegnplspacdlwswerrfrewvqsprqrwgtgtlaedeLDEVMKLLQRMLAWKPSERLDIYSVLKSEWM 256
                 4444...2556999************************************9999****************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       0.9   5.4e+03     117     136 ..       4      23 ..       2      25 .. 0.82
   2 !   20.6   0.0   3.6e-08   0.00022     141     200 ..      86     143 ..      80     177 .. 0.84
   3 ?   -2.8   0.0       0.5     3e+03     231     255 ..     226     250 ..     220     253 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.9
                  HHHHHTTEEEST-SGGGEEE CS
  Pkinase_Tyr 117 eyLeskklvHrdlaarNvLl 136
                  + ++++ + H dl   N +l
   CCE30557.1   4 SLIHDRGYAHGDLHLGNLFL 23 
                  567899999****9999887 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 3.6e-08
                  EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 141 vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEift 200
                  +  +sDfG+a +       +++ ++ +p+   +pEsl+e +  +t +sD+Ws G +++E++ 
   CCE30557.1  86 MLILSDFGVAFRS----GDKSRFKSYTPLVLRPPESLFEPEtpLTFASDIWSLGCVIFELLA 143
                  56789***99887....445566778899999******998889***************987 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.5
                  BHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 231 peelyelmkkcweedpeeRptfsel 255
                   +e+++l+++ ++ +p+eR ++ ++
   CCE30557.1 226 LDEVMKLLQRMLAWKPSERLDIYSV 250
                  5788999999999999999887665 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.2e-07    0.0037     182     243 ..      86     141 ..      77     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.2e-07
  Kinase-like 182 glmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyri 243
                   l+l +f+  +r g+k +  s ++  + PpE l +        +t  t++ d W lG vi+ +
   CCE30557.1  86 MLILSDFGVAFRSGDKSRFkSYTPLVLRPPESLFE-------PETPLTFASDIWSLGCVIFEL 141
                  6899**************99999********9877.......5899***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2230.95
//
Query:       CCE30558.1  [L=281]
Description: uncharacterized protein CPUR_04406 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2273.23
//
Query:       CCE30559.1  [L=207]
Description: uncharacterized protein CPUR_04407 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1553.99
//
Query:       CCE30560.1  [L=149]
Description: uncharacterized protein CPUR_04408 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1124.35
//
Query:       CCE30561.1  [L=524]
Description: uncharacterized protein CPUR_04409 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-13   50.4   0.0    3.1e-13   49.3   0.0    1.6  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
  ------ inclusion threshold ------
        0.1   13.0   0.0       0.26   11.7   0.0    1.7  1  DUF4413        Domain of unknown function (DUF4413)


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   3.5e-17   3.1e-13       3      86 .]     347     429 ..     345     429 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 3.5e-17
                    HHHHT------TT....--HHHHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHHHHHHHH CS
  Dimer_Tnp_hAT   3 dkyleelpvlrrkeksefdvlewwkensskyPnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallcieqwl 86 
                    ++ylee + +++   +efd++++w +++   P ls++a dvL++  +s  +Er Fs ++  l++sr++l+ ++ e   c++qwl
     CCE30561.1 347 RRYLEE-DPIPFLDGEEFDPIQYWLKRRVTQPQLSQMALDVLACSPMSDDCERLFSSAKMLLSDSRSRLKMDIIEGGECLRQWL 429
                    78****.99998766********************************************************************7 PP

>> DUF4413  Domain of unknown function (DUF4413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.9e-05      0.26      49      95 ..     249     294 ..     203     300 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.9e-05
     DUF4413  49 kksnlllaiaviLDPryKlkyvefalkkiygedakkvvdkvrdklke 95 
                 +k + ++ + v+LDPr K++ +  ++ +  +++a  +v +v++ + +
  CCE30561.1 249 DKDQAAYYLCVVLDPRAKMSWFHDTWDMYPDTKA-AWVPEVQRLMLQ 294
                 46667788889************99988776654.477777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3610.76
//
Query:       CCE30562.1  [L=491]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-16   59.1   0.0    2.9e-07   30.1   0.0    2.3  2  Pkinase      Protein kinase domain
    0.00062   19.1   0.0        1.4    8.1   0.0    2.9  3  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.039   13.3   0.0        7.8    5.7   0.0    2.2  2  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   5.1e-10   3.1e-06       1     121 [.      84     214 ..      84     215 .. 0.86
   2 !   30.1   0.0   4.9e-11   2.9e-07     135     264 .]     308     471 ..     303     471 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 5.1e-10
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.......HHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHH. CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.......kkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladlle. 90 
                 y++++klG Gsf++V  a++++t k vA+K+  ++  +++ +       ++v+  ++  +kl  p +v  ++ +     + +lv+  +++  l +    
  CCE30562.1  84 YRVVHKLGYGSFSTVWLALDEKTPKYVAIKVGTTDTSRSEIDtisqitqNAVMDNMRTDQKLLFPTVVDRFDLVGPnGIHPCLVTSPARCS-LRNSQDe 181
                 67899**************************999998888878777776777888888888889999999999987356889999999988.5555553 PP

                 ..HHSS--HHHHHHHHHHHHHHHHHHHHTTEE- CS
     Pkinase  91 ..rkgslseeeakkiakqilegleylHskgiiH 121
                     g ++ + a+++a+q++ +l+ lH++g+ H
  CCE30562.1 182 gfFFGLFPLDVARSFAAQLVIALSILHKRGFAH 214
                 6555679999*********************99 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 4.9e-11
                 TEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT...SHH...H CS
     Pkinase 135 gelKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg...etkeklp 228
                 ++l ++DFG+a +  ++s  +   ++   ++PE     ++  + ++D+WslG  ++ ll+ + ++++  +++   ++l +      ilg     +++++
  CCE30562.1 308 AKLVLGDFGVAFRPYEES-QDGSHASALMRPPESRfdPGRTLTFASDIWSLGYAIFDLLAPRWILNEYCERN--DNILSD-----TILGrsfYFDKEVK 398
                 56789******9999887.8899999999****998666777**********************99544433..333333.....34442222222222 PP

                 HHTTS........................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 229 easei........................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                     i                                         e +++ll+ +l+ +p++R+ ++++lq++++
  CCE30562.1 399 V---InttaeddirsleverqfrervrdsrhewkldkfaedenheIEALIKLLRCMLAFEPSERPDISKVLQSEWM 471
                 2...122244555777778999********************9999999**************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00045       2.7       4      58 ..      87     139 ..      84     153 .. 0.76
   2 !    8.1   0.0   0.00024       1.4     143     199 ..     311     365 ..     303     374 .. 0.76
   3 ?   -0.8   0.0      0.12   7.3e+02     228     256 ..     438     466 ..     418     468 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00045
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHH..HHHHHHTS CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelle..eakimkkl 58 
                   +klG G+f++V+ +  +    k+   Va+K+ + +++++e + + +  + ++m ++
   CCE30562.1  87 VHKLGYGSFSTVWLALDE----KTPKYVAIKVGTTDTSRSEIDTISQitQNAVMDNM 139
                  689***********9888....88999****99988888875554432255566665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00024
                  EE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 143 kisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEif 199
                   ++DfG+a +     + +++++++ +    +pEs ++    +t +sD+Ws G  ++ ++
   CCE30562.1 311 VLGDFGVAFRP----YEESQDGSHASALMRPPESRFDPGrtLTFASDIWSLGYAIFDLL 365
                  57899999888....4444455555555669***99854459**********9998876 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.12
                  TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 228 ekcpeelyelmkkcweedpeeRptfselv 256
                  ++  e+l +l++  ++ +p+eRp++s+++
   CCE30562.1 438 NHEIEALIKLLRCMLAFEPSERPDISKVL 466
                  44556677777777899******999986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0013       7.8      15      60 ..      85     128 ..      75     144 .. 0.76
   2 ?    5.1   0.0     0.002        12     183     242 ..     310     363 ..     303     368 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0013
  Kinase-like  15 vrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlk 60 
                   +++ l+ g +s v+++ d++t +++a+kv+++    s+++++ ++
   CCE30562.1  85 RVVHKLGYGSFSTVWLALDEKTPKYVAIKVGTTD--TSRSEIDTIS 128
                  34667999***********************985..5555555544 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.002
  Kinase-like 183 lmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyr 242
                  l+lg+f+  +r  ++ +  s+  +   PpE +   g+       + t++ d W lG +i+ 
   CCE30562.1 310 LVLGDFGVAFRPYEESQDgSHASALMRPPESRFDPGR-------TLTFASDIWSLGYAIFD 363
                  6666666555544444433666666677776655444.......78*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3522.63
//
Query:       CCE30563.1  [L=298]
Description: uncharacterized protein CPUR_04411 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-05   25.9   0.1    2.7e-05   25.1   0.1    1.4  1  Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
  ------ inclusion threshold ------
      0.078   12.3   0.0       0.14   11.5   0.0    1.3  1  CcmH            Cytochrome C biogenesis protein


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1     3e-09   2.7e-05       1      87 [.      16     104 ..      16     109 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3e-09
  Myb_DNA-bind_3   1 eWspeeekilvdllveqvkkgnriekktfkk..eawkeileefna.ktgakytkkqlknrlkklrkeyklvkellersgfsWDpttktvt 87 
                     +Ws+ee+ ++++ll+e  ++g + +++ +++  +  ++ + ++ + + + + ++k+++nr+  l+  +++ ++    +g +++++t +++
      CCE30563.1  16 RWSSEETFLFLELLLEA-RRGQQLNGNRVRDirDVLESFIPTLSTrFPNRQWNMKAIENRYAWLKGTWQAFCAAEAIPGTTYNEETGMLQ 104
                     5**************98.6777777888875224566666667777899999**********************************9986 PP

>> CcmH  Cytochrome C biogenesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.6e-05      0.14      63      93 ..     101     131 ..      96     144 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.6e-05
                 HHHHHT--HHHHHHHHHHHHTTT-EE---XX CS
        CcmH  63 emlkaGksdeeivdylvarYGdfVlykPpvk 93 
                  ml+  ks++++++   +rYG fV  kP  +
  CCE30563.1 101 GMLQINKSSAKVLESEHKRYGSFVAAKPLPT 131
                 689999*********************9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2197.45
//
Query:       CCE30564.1  [L=199]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-07   29.5   0.0    8.8e-07   28.6   0.0    1.5  1  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   4.9e-11   8.8e-07       1     121 [.      38     167 ..      38     169 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.9e-11
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB-.-EEEEEEE...............SSEEEEEEE--TTE CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpniv.rlyevfee...............kdelylvleyvegg 83 
                 y+ ++klG+Gsf++V  a++++t+k vA+K+  ++ +++        Ei+il ++  + +  +++e+ ++                ++ +lv+  +++ 
  CCE30564.1  38 YRIVHKLGHGSFSTVWLAIDETTRKYVAIKVGTVDAERS--------EINILSQMAQSPVSgNMWEYETSpvpvvldqfeidrpqGTYPCLVTLPARCS 128
                 67889**************************99998876........7888888885555414555544477777777777886555556776666654 PP

                 BHHHHHH..HHSS--HHHHHHHHHHHHHHHHHHHHTTEE- CS
     Pkinase  84 eladlle..rkgslseeeakkiakqilegleylHskgiiH 121
                  l d  e  r++ ++ + a+++a+q++++++ +H++g  H
  CCE30564.1 129 -LRDTKEasRQRLFQLDVARSLAAQLVHAVSLVHNRGYAH 167
                 .887777778888**********************99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1446.55
//
Query:       CCE30565.1  [L=226]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-13   49.9   0.0    3.4e-13   49.6   0.0    1.1  1  Pkinase      Protein kinase domain
     0.0001   21.7   0.0    0.00014   21.2   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
       0.15   11.4   0.2       0.45    9.8   0.0    1.7  2  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   5.7e-17   3.4e-13       1     132 [.      52     192 ..      52     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 5.7e-17
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.......HHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHH. CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.......kkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladlle. 90 
                 y++++klG+Gsf++V  a++++t k vA+K+  ++  +++ +       ++v+  ++  +kl  p ++  ++++     + +lv+  ++++ l d  + 
  CCE30565.1  52 YQVVHKLGHGSFSTVWLALDEKTTKYVAIKVGTTDTSRSEIDiisqitqNAVMDNVRTDQKLLFPTVLDRFDIIGPnGAHPCLVTPPARCN-LRDTKRa 149
                 78999***************************99999998888877777777888888888889999999999987478999****99988.7777776 PP

                 .HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase  91 .rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid 132
                  r+g ++ + a+++a+q++++l+ +H++g+ H Dl   N++++
  CCE30565.1 150 aRSGFFQLDVARSFAAQLVKALSIVHERGFAHGDLHFGNLFLQ 192
                 68899***********************************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.4e-08   0.00014       3     137 ..      54     192 ..      52     198 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.4e-08
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH........HHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee........keelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkf 91 
                  + +klG+G+f++V+ +  +    k++  Va+K+ + +++++e        ++++++++++ +kl  p ++    ++  ++ + ++vt  +   +L++ 
   CCE30565.1  54 VVHKLGHGSFSTVWLALDE----KTTKYVAIKVGTTDTSRSEidiisqitQNAVMDNVRTDQKLLFPTVLDRFDIIGpNGAHPCLVTPPA-RCNLRDT 146
                  6789***********9888....88999****9988777776333222334555556666666666777777777776666788888876.5699999 PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLls 137
                   r+ ++  ++l+   sfa+q+ k+++ ++++ + H dl   N +l+
   CCE30565.1 147 KRAARSGFFQLDVARSFAAQLVKALSIVHERGFAHGDLHFGNLFLQ 192
                  999999999******************************9999886 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   7.6e-05      0.45      11      56 ..      49      94 ..      42     111 .. 0.80
   2 ?   -1.0   0.0      0.15   8.7e+02     145     178 ..     160     192 ..     151     210 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 7.6e-05
  Kinase-like 11 ertlvrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdl 56
                 ++ + +++ l++g +s v+++ d++t +++a+kv+++    s+ d+
   CCE30565.1 49 NKRYQVVHKLGHGSFSTVWLALDEKTTKYVAIKVGTTDTSRSEIDI 94
                 4556677889*************************99766655543 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.15
  Kinase-like 145 arlllTlqlirlaanLqakglvhgkftvdnllld 178
                  ar    +ql++     +++g  hg+++  nl+l+
   CCE30565.1 160 ARSFA-AQLVKALSIVHERGFAHGDLHFGNLFLQ 192
                  55544.8999999999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1644.91
//
Query:       CCE30566.1  [L=419]
Description: uncharacterized protein CPUR_04414 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   22.8   0.1    0.00028   21.5   0.1    1.7  1  FAR1       FAR1 DNA-binding domain
  ------ inclusion threshold ------
       0.78    8.7   6.4      0.094   11.8   2.1    1.6  2  BAF1_ABF1  BAF1 / ABF1 chromatin reorganising factor


Domain annotation for each model (and alignments):
>> FAR1  FAR1 DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   3.1e-08   0.00028       2      67 ..     120     184 ..     119     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.1e-08
        FAR1   2 fYkeYakrvGFsvrvkksr..rsrkdgeiirrkfvCskeGfkkekkktkeakrerastrtgCkAmlvv 67 
                 + +++a  +GF v+++k +  + +++g++ r  f C + G +++++k+    ++r++ +t+Ck +++ 
  CCE30566.1 120 YLHDFAVPLGFDVARSKWYgkKNEATGKMSRLYFRCCRGGKQDSRRKA---DSRRNTIKTECKWKVTA 184
                 56789*********9998611455678999999*******99988888...999*********88765 PP

>> BAF1_ABF1  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.16   1.5e+03     459     486 ..      65      92 ..      47     111 .. 0.53
   2 ?   11.8   2.1     1e-05     0.094     419     498 ..     257     405 ..     150     416 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.16
   BAF1_ABF1 459 dneneerkrsrnnkksdlvklnaknslv 486
                 d+e+    ++++ + +d+ k+n+++++ 
  CCE30566.1  65 DTESDCDLQQKEVNLEDIEKMNTEEDHS 92 
                 4444334444444444444444333332 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1e-05
   BAF1_ABF1 419 n....................................................................sereerqkeleseakeaqaaAqaainesss 449
                 +                                                                    +  + r+k+ +s  + a+a  qaa+ne++ 
  CCE30566.1 257 PsgaiypkpysaanarrntpsrnttprtpagrpsapknssllagqdrthrptaesqssfqlsppagfssAPSQGREKNGRSFVSLAVAQTQAALNEQMV 355
                 01111112222222222222222222333333444444445555555566777777889999999998555566999999999**************** PP

   BAF1_ABF1 450 lkrtlaeeddneneerkrsrnnkksdlvkl.naknslvedesalesledv 498
                  k++la+e++   +e+kr  n+ +++ +k+ n++ + v+ + +l++  ++
  CCE30566.1 356 EKQRLANEEKRLANEEKRLANEAEAQRQKIvNMRAAFVSSRLRLMESGEI 405
                 *****999999999999998888776555415555666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1456  (0.0812092); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3089.63
//
Query:       CCE30567.1  [L=371]
Description: probable dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-15   56.1   0.0    3.2e-14   53.0   0.0    2.0  1  Pkinase         Protein kinase domain
      0.002   17.0   1.1     0.0066   15.3   0.4    1.8  2  Pkinase_fungal  Fungal protein kinase
     0.0093   15.9   0.1      0.021   14.8   0.1    1.7  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   5.3e-18   3.2e-14       3     264 .]      53     366 ..      51     366 .. 0.77

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 5.3e-18
                 EEEEEEEESSEEE.......EEEEET.TTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEE....SSEEEEEEE--TTEBHHH CS
     Pkinase   3 kleklGeGsfGkV.......ykavek.etgkivAvKkikkekakkkkekkvlrEikilkklk..hpnivrlyevfee....kdelylvleyveggelad 87 
                 ++ klG G  ++V       yk+ ++ +  + v +K+ + + ++ +++ + l+ i+    ++   ++i + +++fe      ++ +lv+e ++++ l++
  CCE30567.1  53 TVGKLGYGRGSTVwlaenlnYKIWSRsKIPRYVSIKITASDVEDAQER-AWLTRISEADPSHqgLSHIRTPIDAFEMkgalGTHSCLVFEPMRET-LWR 149
                 566777777777722222222222220223556666666665555554.444444433333335677888889998878888999********66.999 PP

                 HHH..HHSS--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEE.TTTE..EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHH. CS
     Pkinase  88 lle..rkgslseeeakkiakqilegleylH.skgiiHrDlKpeNiLid.ekge..lKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkv. 178
                 + +   ++ l+ + +k  +  +l++l+ylH + ++iH D+K++N++i  e++    +++D+    ++ +  + +++ g  +Yl+   +++n   ++++ 
  CCE30567.1 150 FQQrwPRQRLPLDAIKLHMLYLLKALDYLHtECRLIHTDIKDDNVMITiEHDSvlKRLVDY---FKMPQPRHIRDEDGRVTYLSVDGMEDNALfERPAg 245
                 998887899*********************5566**************866666567***9...4667777799**************88777554434 PP

                 ..HHHHHHHHHHHHH..HSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS...................................-HHHH CS
     Pkinase 179 ..DvWslGvilyell..tgkppfsgekgkekvekeldqlekilkilgetkeklpeasei...................................seeak 238
                   Dv+ + v l++++   g pp +  +++      +++++    i++e  ek  + +e+                                   +e ++
  CCE30567.1 246 ddDVYDAHVHLAQMIsiLGDPPQALVERER----RFRDFKIGSTIVNERGEKCSTMNEFwggpffdddgcmirkelikerrdlsdtvteitgdeKERFL 340
                 449**********97336999999666655....55554445677777778888888889*************************************** PP

                 HHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 239 dllkkllkkdpkkRltaeellqhpyl 264
                 d+  ++l++ p++R ta+el qhp+l
  CCE30567.1 341 DFAASMLQWLPENRKTAKELSQHPFL 366
                 ************************97 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1     0.041   2.4e+02     154     196 ..      59     108 ..      46     119 .. 0.84
   2 !   15.3   0.4   1.1e-06    0.0066     286     343 ..     134     199 ..      85     235 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.041
  Pkinase_fungal 154 vgRgTtcwrarkeger......gkeyv.vKdsWrdaerksEaelLkkaee 196
                      gRg t+w a++ + +       ++yv +K++  d e  +E   L +++e
      CCE30567.1  59 YGRGSTVWLAENLNYKiwsrskIPRYVsIKITASDVEDAQERAWLTRISE 108
                     59**********99888888876677767999999999999999988865 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.1e-06
  Pkinase_fungal 286 vhrrlvispvGkpiekaespkellealrDaIkgh........rsLflkagiLHrDiSenNilitds 343
                     +h++lv++p+ +++++++++    +   DaIk h          L+++++++H Di  +N++it +
      CCE30567.1 134 THSCLVFEPMRETLWRFQQRWPRQRLPLDAIKLHmlyllkalDYLHTECRLIHTDIKDDNVMITIE 199
                     699999999999999999988888888888877633332222679******************932 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   3.5e-06     0.021     102     186 ..     103     203 ..      14     210 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.5e-06
                 HCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--S..................SS-EEEE-SS-SGGGEEEC CS
         APH 102 laalhqvdpaalpladflaqdlellrqlesatarllaselld.lleeleeqvlaalaallpg..................elptvllHgDlhpgNllvd 181
                 l +++++dp + +l++++      ++++++ + + + +++++  +e l++ + +++++ +++                  + + +l+H D++ +N++++
  CCE30567.1 103 LTRISEADPSHQGLSHIR---TPIDAFEMKGALGTHSCLVFEpMRETLWR-FQQRWPRQRLPldaiklhmlyllkaldylHTECRLIHTDIKDDNVMIT 197
                 448999999999999999...44666666666566666666666667777.6666666666668888888888888888889****************9 PP

                 ...TTE CS
         APH 182 .pddgr 186
                  ++d  
  CCE30567.1 198 iEHDSV 203
                 655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2706.66
//
Query:       CCE30568.1  [L=576]
Description: related to asparagine synthases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-19   68.4   1.6    2.1e-08   34.2   0.1    3.2  3  Asn_synthase  Asparagine synthase
    4.1e-08   33.2   0.0    2.1e-07   30.9   0.0    2.1  1  GATase_7      Glutamine amidotransferase domain
    1.9e-05   24.9   0.0    9.6e-05   22.6   0.0    2.1  2  GATase_6      Glutamine amidotransferase domain
    0.00028   20.4   0.0     0.0051   16.3   0.0    2.2  2  DUF3700       Aluminium induced protein


Domain annotation for each model (and alignments):
>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   5.9e-05      0.26      17      53 ..     281     319 ..     275     335 .. 0.86
   2 !   22.3   0.1     2e-08   9.1e-05     117     149 ..     423     454 ..     415     458 .. 0.85
   3 !   34.2   0.1   4.8e-12   2.1e-08     203     301 ..     452     568 ..     448     572 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.9e-05
  Asn_synthase  17 dvpvGalLSGGlDSSliaalaarqsk..splktFsigfe 53 
                   d +v++l+SGGlD +++a la+  ++  +p+    ++fe
    CCE30568.1 281 DARVAVLFSGGLDCTVLARLASDLLPddQPIDLLNVAFE 319
                   889********************9999999999998884 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 2e-08
  Asn_synthase 117 kgvkvvLsGeGaDElfgGYpyfykaalsrsref 149
                   +  +v+LsG GaDElfgGY  ++  a+sr+ ++
    CCE30568.1 423 TTARVLLSGLGADELFGGYV-RHATAYSRRGYE 454
                   4578***************9.**9999987765 PP

  == domain 3  score: 34.2 bits;  conditional E-value: 4.8e-12
  Asn_synthase 203 gedelhrelyldlktllpgdllrkDrasmahglEaRvPflDhrlvevalrlppelklrg.................gieKyiLRealegylPeeile 282
                   g++ l +el+ld+ +l + +l r Dr  +++  E+R+PflD ++v++a +l +e+k +                  + +K+iLR +++ +   e+++
    CCE30568.1 452 GYEGLVEELQLDVSRLGKRNLGRDDRVIAHWEKEVRFPFLDEDFVRWAIGLSVEEKCDFahpevevesegeaqalpEPGKRILRLLAQELGMVEVAR 548
                   66778899************************************************99899**************************9999999999 PP

  Asn_synthase 283 RpKegfsapvgewklk.gel 301
                    +K++ + + ++ k++ g++
    CCE30568.1 549 EKKRAIQFGARTAKMEsGKV 568
                   99999998888888876665 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   4.7e-11   2.1e-07      13     116 ..      63     165 ..      52     169 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 4.7e-11
    GATase_7  13 aQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllallea............ewgeealerlnGmfAfaiwdeeekrlllaRDrlGi 99 
                 +QP++ + +   v++ nGe    +  +           +  D+e ++all++              + ++l+ ++G fAf+++de+ krl+  RDrlG 
  CCE30568.1  63 KQPLA-DPSTGSVLCWNGEAWKIRGREV----------QGNDAEAIMALLSEasrspcavddggTSVLRVLRDVEGPFAFIYYDEAAKRLFYGRDRLGR 150
                 56666.3455556666666443322222..........345777777777767777777775776777888999************************* PP

    GATase_7 100 kPLyygedkgdallfaS 116
                 ++L +     d +l+aS
  CCE30568.1 151 RSLLVKAG--DPFLLAS 165
                 ***98776..4677777 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.2e-08   9.6e-05      13     132 ..      43     164 ..      29     166 .. 0.75
   2 ?   -1.1   0.0      0.45     2e+03      17      81 ..     246     301 ..     231     324 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.2e-08
    GATase_6  13 evalaHvRlaivglaeeega.qPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall..........eelG...eevlerlrGmfa 97 
                 ++ +++  + +  l+ ++ a qP+  ++ + +l  NGe  + +         + ++    +D+e ++all          ++ G    +vl+ ++G fa
  CCE30568.1  43 HATILALTSTVLSLRGDHVAkQPLADPSTGSVLCWNGEAWKIR-------G-REVQ---GNDAEAIMALLseasrspcavDDGGtsvLRVLRDVEGPFA 130
                 455555555566666566666***999999*******998885.......3.4455...79*******997777777666555677777778******* PP

    GATase_6  98 faiwdkrentlilardrlgvkplyyavdesglafa 132
                 f  +d+++++l+  rdrlg++ l ++  ++ ++ a
  CCE30568.1 131 FIYYDEAAKRLFYGRDRLGRRSLLVKA-GDPFLLA 164
                 ********************9999985.6666655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.45
    GATase_6  17 aHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall 81 
                 +H+Rla +    + ++ P+  ++g ++++  G  +++    +++     + f +  D+ vl++l+
  CCE30568.1 246 LHRRLAESLR-LRVQQIPV--PSGAIMTSTTGATSTAL--DARV----AVLFSGGLDCTVLARLA 301
                 5677664433.34444666..88888888888877774..2222....22355666777777755 PP

>> DUF3700  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.041   1.8e+02     112     137 ..      22      47 ..      19      59 .. 0.88
   2 !   16.3   0.0   1.1e-06    0.0051     116     155 ..     112     151 ..      92     165 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.041
     DUF3700 112 rtLrdrgPypadqvvkdleGkfafvl 137
                 r Lr+rgP     v k l+ ++a +l
  CCE30568.1  22 RRLRNRGPDQQATVTKYLDDSHATIL 47 
                 78*******************99987 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.1e-06
     DUF3700 116 drgPypadqvvkdleGkfafvlydskaktvfvaldadgsv 155
                 d g  ++ +v++d+eG faf+ yd+ ak +f  +d+ g+ 
  CCE30568.1 112 DDGGTSVLRVLRDVEGPFAFIYYDEAAKRLFYGRDRLGRR 151
                 666777889***********************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3936.05
//
Query:       CCE30569.1  [L=315]
Description: uncharacterized protein CPUR_04417 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        7.2    6.6   7.5       0.39   10.7   0.7    2.5  2  cEGF      Complement Clr-like EGF-like


Domain annotation for each model (and alignments):
>> cEGF  Complement Clr-like EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.7   2.2e-05      0.39       4      20 ..      77      93 ..      76      93 .. 0.96
   2 ?   -3.0   1.1      0.42   7.5e+03       2       7 ..     310     315 .]     310     315 .] 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.2e-05
                EE-STTEEE.ETTTEEE CS
        cEGF  4 CsCppGYkltpdGrsCt 20
                C+CppG kl+++ ++C+
  CCE30569.1 77 CACPPGQKLDASSKTCV 93
                ****************7 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.42
                 EEEE-S CS
        cEGF   2 YrCsCp 7  
                 + C C+
  CCE30569.1 310 FDCHCH 315
                 5699*8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2398.28
//
Query:       CCE30570.1  [L=399]
Description: related to alpha-methylacyl-coa racemase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.3e-123  411.5   0.0   3.7e-123  411.3   0.0    1.0  1  CoA_transf_3  CoA-transferase family III


Domain annotation for each model (and alignments):
>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  411.3   0.0  2.1e-127  3.7e-123       1     368 []      10     374 ..      10     374 .. 0.98

  Alignments for each domain:
  == domain 1  score: 411.3 bits;  conditional E-value: 2.1e-127
  CoA_transf_3   1 LaGvrVldlsqvlaGplatslLAdlGAeVIkvEppkkgDpaRkvgpseekgesayflavnrnKrsvalDlkseegrellkrLvakADVvieNfrpgv 97 
                   L+G rVld+++vlaGp++t++L+d+GAeVIk+E+p +gD++R++gp      s   ++ nrnK+s+ l +++++g ++l++Lvak+D+++eN+ pg+
    CCE30570.1  10 LEGYRVLDMTRVLAGPYCTQILGDMGAEVIKIEHPVRGDDTRAWGPPV----SDKTEQANRNKKSLGLSFQHKQGVDILHKLVAKCDILVENYLPGT 102
                   89******************************************9955....677899*************************************** PP

  CoA_transf_3  98 lerlglgyeelrainPrLiyasvsgyGqsGpkakrpgyDlvaqaasGlmsltgepdgpPvkvgvplgDivtgllaavailaallarertGkGqvidv 194
                   l+++ l+y++lr+inP Liyas++gyGq+Gp+++r+gyD++++a++Glm++tg+ +gpPvkvgv+++D +tgl+++++i+aall r +tGkGq+ dv
    CCE30570.1 103 LKKYALDYDTLRRINPGLIYASITGYGQTGPYSNRAGYDVMVEAEFGLMHITGQRNGPPVKVGVAVTDLTTGLYTSNSIMAALLGRAKTGKGQHLDV 199
                   ************************************************************************************************* PP

  CoA_transf_3 195 slleaalallapqlleylatgevperq.gnrdpaaapygvyrtkdgwvaiaaatdkqwaalckalgrpelaedprfatnasrlenraeldaelaewl 290
                   +l +  +a+la+ +   l +ge+ + + g ++p++ py+ ++tkdg + ++ ++d+ +  l++ l +pe+++d rf+tna+r+ +r+el+a +++++
    CCE30570.1 200 ALSDCQTATLANIASSCLISGEKDSGRwGTAHPSIVPYRSFKTKDGDILLGGGNDRLFGVLADGLSKPEWKQDARFKTNADRVCHRDELEAMIEAIT 296
                   **************99977777777555********************************************************************* PP

  CoA_transf_3 291 aertaaewlellaaagvpaapvntleevlddpqlaarglvvevddpdygevpvvglpvrlsetparvkraaPklGedt 368
                   +++t+++wl+ ++  g+p a+vn+++ +l++ +++ar++vve+++++ g++++v++pv++s+t++ +++a+P+lG++t
    CCE30570.1 297 QQKTTEQWLQKFEGSGLPYAAVNDVQATLNHAHTKARDMVVEMNHKACGPIKLVNTPVKFSDTQPSIRSAPPMLGQHT 374
                   *****************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3057.77
//
Query:       CCE30571.1  [L=222]
Description: uncharacterized protein CPUR_04420 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0064   16.5   0.1     0.0088   16.0   0.1    1.3  1  Protocadherin    Protocadherin
  ------ inclusion threshold ------
      0.056   11.8   5.9       0.03   12.7   4.2    1.3  1  DUF3827          Domain of unknown function (DUF3827)
      0.058   13.2   0.0      0.097   12.5   0.0    1.4  1  ECSCR            Endothelial cell-specific chemotaxis regulat
      0.087   13.0   0.8       0.25   11.5   0.8    1.8  1  SLBP_RNA_bind    Histone RNA hairpin-binding protein RNA-bind
       0.13   13.2   0.2       0.19   12.6   0.2    1.6  1  EphA2_TM         Ephrin type-A receptor 2 transmembrane domai
       0.26   10.8   0.9       0.43   10.0   0.9    1.3  1  ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family


Domain annotation for each model (and alignments):
>> Protocadherin  Protocadherin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     3e-06    0.0088      29      86 ..      16      78 ..       9     148 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3e-06
  Protocadherin 29 dveslskdrlkiliavlaGvvtv..ilvilivvlvRycrqk..aksgykagkKe..eedfvtPk 86
                   d++     rl i+++v+aG+++v  i +i+iv +++ cr++   ++   +  K+   + +  P+
     CCE30571.1 16 DTQVPDGTRLWIVVGVIAGILVVtgIATIIIVSFIK-CRRRcrRRPSTPSPYKDvsAKKWARPR 78
                   55666778999********97765589999999999.887733344444444665566677776 PP

>> DUF3827  Domain of unknown function (DUF3827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   4.2     1e-05      0.03     260     289 ..      23      54 ..      11      62 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1e-05
     DUF3827 260 nnlWiivaVlvPilvvvii..iiilyakLCrk 289
                 + lWi+v+V++ ilvv+ i  iii+ ++ Cr+
  CCE30571.1  23 TRLWIVVGVIAGILVVTGIatIIIVSFIKCRR 54 
                 67**************9775588999999997 PP

>> ECSCR  Endothelial cell-specific chemotaxis regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.3e-05     0.097      25      63 ..      29      68 ..      16      91 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.3e-05
       ECSCR 25 fgvisfivilv.vvviilvsvvslrfkcrknkesedpqkp 63
                 gvi+ i+++  +  ii+vs +  r +cr+   +  p k 
  CCE30571.1 29 VGVIAGILVVTgIATIIIVSFIKCRRRCRRRPSTPSPYKD 68
                6899877655427789*************99888888776 PP

>> SLBP_RNA_bind  Histone RNA hairpin-binding protein RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.8   8.3e-05      0.25      33      55 ..      53      75 ..      46      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.3e-05
  SLBP_RNA_bind 33 krkkkehPktPdkeqkvSkrswd 55
                   +r+ ++ P+tP ++++vS ++w 
     CCE30571.1 53 RRRCRRRPSTPSPYKDVSAKKWA 75
                   3444889***************7 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   6.4e-05      0.19       1      37 [.      27      71 ..      27     171 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.4e-05
    EphA2_TM  1 iiaaavaglvllvilvilvlvlvrrrsknrkqksdl.........k 37
                i+++++ag++++  + ++++v + ++++ r++++ +         +
  CCE30571.1 27 IVVGVIAGILVVTGIATIIIVSFIKCRR-RCRRRPStpspykdvsA 71
                5777788777777655555554434433.33333322333433330 PP

>> ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.9   0.00014      0.43      19      43 ..      31      58 ..      28      62 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00014
                     HHHHHHHHHHHHHHHCCHH.HC..CCS- CS
  ATP1G1_PLM_MAT8 19 ifAglLfivGiliilSkkc.kC..kfkq 43
                     ++Ag+L ++Gi+ i+  ++ kC  +++ 
       CCE30571.1 31 VIAGILVVTGIATIIIVSFiKCrrRCRR 58
                     68*********86554444344114444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1865.84
//
Query:       CCE30572.1  [L=410]
Description: related to anthranilate phosphoribosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-61  207.2   0.0    6.2e-61  206.2   0.0    1.5  1  Glycos_transf_3  Glycosyl transferase family, a/b domain
    4.9e-10   39.1   0.1    9.2e-10   38.2   0.1    1.5  1  Glycos_trans_3N  Glycosyl transferase family, helical bundle 
  ------ inclusion threshold ------
        0.2   11.5   0.0         12    5.7   0.0    2.1  2  IPK              Inositol polyphosphate kinase


Domain annotation for each model (and alignments):
>> Glycos_transf_3  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.2   0.0     1e-64   6.2e-61       4     252 ..     107     393 ..     104     394 .. 0.93

  Alignments for each domain:
  == domain 1  score: 206.2 bits;  conditional E-value: 1e-64
                      BEEEEESS-SSSTHHHHHHHHHHHHHHTT-BEEEEE-STCTTCS-HHHHHCTS..T--S..T--HHHHHHHHHHHSEEEEEHHSSSSHHHHHHH CS
  Glycos_transf_3   4 lvDivgTGGdgantfNiStaaaivvAaaGvkvakhgnrsvssksGsaDvLeal..gvnl..eltpeeveklleevgvgflfapeyhkamkhvap 93 
                      l DivgTGGd +ntfN+St+a+i+++++ + v khgnr+++sksGsaD+++++     +   ++p+++ k+  e++ +flfap +h++m++vap
       CCE30572.1 107 LCDIVGTGGDCHNTFNVSTTASILASSL-LMVSKHGNRASTSKSGSADMINSMkpRAPVlsAVKPSSLVKIYSETNYSFLFAPVFHTGMRYVAP 199
                      78********************999888.89*********************95534445689******************************* PP

                      HHHHHTT.-SSHHHCHHHHHT....SEEEEHHHHHHHHTCHSEEEEEEEESTTSSCCS.TSHHHHHHHHHHHHHHHH.TT.....EEEEEEEEE CS
  Glycos_transf_3  94 vrrelgirTvfnlLGPLinpar..vkkqllgvyskelaeklaevlkelgveralvvhg.dGldevsllakttvaelk.dg.....eiteytlep 178
                      +r++l +rT+fn LGPL np++   +++++gv + +l ++ ae+lk  g  +al+v+g + lde+s ++ t+ + +  ++      i+++t++p
       CCE30572.1 200 IRKQLPFRTIFNNLGPLANPVEdvLEARVIGVGRRDLGPPFAEALKSAGCRKALIVCGeEELDEISCAGGTLCWLVReKEpggevVIEHFTITP 293
                      ********************6533799*******************************999*************9995557888889******* PP

                      GSSTSSSEEESHHHHS.SHHHHHHHHTTHHTSCHHHHH..HHHHHHHHHHHHHHTTSSSS.......................HHHHHHHHHHH CS
  Glycos_transf_3 179 edfglkraelealegg.epkenaeilkavlegkksaak..rdlvllnagaalvlagkads.......................lkegvakaeev 246
                      edfg  r++l+++ gg ep ena+il+++l g+  + +   d +++n++a++v+ag ++s                       +keg ++a+ +
       CCE30572.1 294 EDFGARRHDLSEVSGGkEPAENAAILQKILFGEFPDDNplIDFIAINTAALFVVAGVCESdtsdmghgddgkvilerghagqrWKEGYRRAKWA 387
                      *************987257***********9998776678*******************999******************************** PP

                      HHTSHH CS
  Glycos_transf_3 247 idsGkA 252
                      i+sG+A
       CCE30572.1 388 IKSGEA 393
                      ****99 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   1.5e-13   9.2e-10       2      62 ..      17      80 ..      16      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.5e-13
                     HHHHHHHTT..---HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-..--HHHHHHHHHHHHHH CS
  Glycos_trans_3N  2 diikklrdg.eeLtaeeirfaihgilkgevtdaqiaAfLmAlrlkG..etaeEiaalaeAmres 62
                     +++ kl+   ++ +aeei++ai+++++++vt+aq++A+L+Al+++     a+ + + a +m+++
       CCE30572.1 17 PLLTKLWPLrNDVSAEEIAEAISHFFTNQVTEAQTSALLIALHFTKldFRADVLQKTAGVMLKA 80
                     67889998867***********************************888899999999999876 PP

>> IPK  Inositol polyphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.007        42      76     103 ..      27      54 ..      22      78 .. 0.78
   2 ?    5.7   0.0    0.0019        12     116     150 ..     119     153 ..     115     313 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.007
                 CT-SHHHHHHHHHHCCCSSSSCCHHHHH CS
         IPK  76 rslskeevkealkkFlsngkslrkdaka 103
                 +++s+ee+ ea+++F+ n++++++ +++
  CCE30572.1  27 NDVSAEEIAEAISHFFTNQVTEAQTSAL 54 
                 57899************99966655544 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0019
                 HHHHCSHSEEESSEEEEEEEETT............ CS
         IPK 116 qvlesqeslrfyssSLLfvyegdseasekaeekea 150
                 ++++ +++  + +sSLL+v  + ++as++++ + +
  CCE30572.1 119 NTFNVSTTASILASSLLMVSKHGNRASTSKSGSAD 153
                 789999999**********9999877776643333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2910.84
//
Query:       CCE30573.1  [L=347]
Description: probable transcription initiation factor IIB [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-33  112.7   1.2    5.5e-19   68.0   0.1    2.3  2  TFIIB         Transcription factor TFIIB repeat
    1.8e-11   43.3   3.5      3e-11   42.6   3.5    1.4  1  TF_Zn_Ribbon  TFIIB zinc-binding
    0.00036   20.6   0.3     0.0016   18.5   0.1    1.9  2  RB_B          Retinoblastoma-associated protein B domain
     0.0012   18.6   1.1     0.0089   15.8   0.1    2.2  2  Cyclin_N      Cyclin, N-terminal domain
      0.002   18.2   0.1        1.8    8.7   0.0    2.9  3  Cyclin_C      Cyclin, C-terminal domain
     0.0071   15.5   0.2      0.046   12.8   0.1    1.9  2  McrBC         McrBC 5-methylcytosine restriction system compo
  ------ inclusion threshold ------
      0.024   14.7   0.2        1.5    8.9   0.0    2.3  2  TFIIB_C_1     Transcription factor IIB C-terminal module 1
      0.037   14.0   0.0         32    4.6   0.0    3.6  3  HTH_36        Helix-turn-helix domain
      0.054   14.1   0.0       0.29   11.7   0.0    2.5  1  Trm112p       Trm112p-like protein
      0.091   12.2   0.0        1.3    8.5   0.0    2.5  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I


Domain annotation for each model (and alignments):
>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.1   3.1e-22   5.5e-19       1      71 []     129     199 ..     129     199 .. 0.97
   2 !   43.6   0.2   1.2e-14   2.2e-11       3      71 .]     243     313 ..     241     313 .. 0.94

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 3.1e-22
                 HHHHHHHTT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--SHHH CS
       TFIIB   1 ikrfadaleLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVsekti 71 
                 i ++++ + + + V +aAk+++kl+ + k++kG+ ++ ++A c++iAcr+++v rt+kei +++ Vs+k++
  CCE30573.1 129 IVSLCETIHMGQNVSNAAKHIFKLVDKHKFMKGKPQEVVIAGCIFIACRQNNVPRTFKEIFNLTSVSKKEV 199
                 5689****************************************************************996 PP

  == domain 2  score: 43.6 bits;  conditional E-value: 1.2e-14
                 HHHHHTT--H..HHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--SHHH CS
       TFIIB   3 rfadaleLpe..kVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVsekti 71 
                 r +++l++++  k+ +   ela++a +   l+Grsp ++aAAc+y+Ac + ++ r    i++ + Vs+ t+
  CCE30573.1 243 RYVSQLGFKNqqKISKISRELAEKANDISALAGRSPLSVAAACIYMACHLMREPRASLPIAKQAGVSDGTV 313
                 5678899998889******************************************************9986 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   3.5   1.7e-14     3e-11       3      43 .]      23      65 ..      21      65 .. 0.96

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 1.7e-14
                  ETTTTC.EE.CHEETSTTCEEESSSSBEEEECCCCCCCHHHHH CS
  TF_Zn_Ribbon  3 CPnCgs.tn.lveDpergelvCtdCGlVlednsidegpewref 43
                  CP+C+  +  l+e++++g++vC +CG+V+  ++id ++ewr+f
    CCE30573.1 23 CPDCKEvPPnLIEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTF 65
                  ******9667********************************8 PP

>> RB_B  Retinoblastoma-associated protein B domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   8.8e-07    0.0016      13      95 ..     125     205 ..     118     222 .. 0.88
   2 ?   -0.5   0.0      0.66   1.2e+03      29      76 ..     251     300 ..     227     332 .. 0.55

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.8e-07
        RB_B  13 aavrlrdLcerLklsselrekiwtlfehvlveetellkdRhlDqillcavYvvakvtkeelsFkeiikaYrkqpqasskvyrs 95 
                 a+  + +Lce +++ +++++ + ++f+  lv++++++k +  + ++  ++++ ++ ++  ++Fkei +    ++++  +v+++
  CCE30573.1 125 AYKMIVSLCETIHMGQNVSNAAKHIFK--LVDKHKFMKGKPQEVVIAGCIFIACRQNNVPRTFKEIFNLTSVSKKEVGRVFKN 205
                 6778899**************999998..7899*********************************99888777777777765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.66
        RB_B  29 elrekiwtlfehvlveetel..lkdRhlDqillcavYvvakvtkeelsFk 76 
                 + ++ki ++ +++  +++++  l  R    +  +++Y+ + + +e +   
  CCE30573.1 251 KNQQKISKISRELAEKANDIsaLAGRSPLSVAAACIYMACHLMREPRASL 300
                 45555555555554433332225555555555678888887776655544 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1     5e-06    0.0089      29     102 ..     120     192 ..      94     212 .. 0.71
   2 ?    1.2   0.1      0.16   2.9e+02      75      87 ..     280     292 ..     266     323 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5e-06
                 HHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHH.HHHHHHHHHHHSSS---HHHHHHHT CS
    Cyclin_N  29 emRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvg.atcLllAaKveeisppkledlvyit 102
                 +    +++++v ++e  ++ +++   a  ++ +++ k+++ k k q v+ a+c+++A++ +++ p + +++  +t
  CCE30573.1 120 KGLMEAYKMIVSLCETIHMGQNVSNAAKHIF-KLVDKHKFMKGKPQEVViAGCIFIACRQNNV-PRTFKEIFNLT 192
                 444567999*************998887777.67888888888877665167*******9888.88888887776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHH CS
    Cyclin_N  75 lvgatcLllAaKv 87 
                  v+a+c+++A+ +
  CCE30573.1 280 SVAAACIYMACHL 292
                 599********87 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1       0.3   5.4e+02      77     112 ..     120     160 ..      90     165 .. 0.77
   2 !    5.9   0.0    0.0073        13      37      91 ..     156     211 ..     138     223 .. 0.82
   3 !    8.7   0.0   0.00099       1.8      16      86 ..     251     320 ..     235     326 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHH.....HHHHGSS--HHCCCCTCGGGCC CS
    Cyclin_C  77 edlkpcvelilell.....ssapssklqavrrkyssskfhk 112
                 + l++ +++i++l+      ++ s+  + +++ + ++kf+k
  CCE30573.1 120 KGLMEAYKMIVSLCetihmGQNVSNAAKHIFKLVDKHKFMK 160
                 55788899999999877764455556677888888888876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0073
                 CCHCCS-H.HHHHHHHHHHCCHHHHS--S-HHHHHHC---HHHHHHHHHHHHHHHH CS
    Cyclin_C  37 ydflsypp.SliAaaalllarstlnspewtetlehytgyskedlkpcvelilells 91 
                 ++f++ +p  ++ a+++++a+++ n p   +++ ++t +sk+++  + + ++++l 
  CCE30573.1 156 HKFMKGKPqEVVIAGCIFIACRQNNVPRTFKEIFNLTSVSKKEVGRVFKNLQKFLL 211
                 4566655514556889*******99999*************************994 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00099
                 HT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHHHC---HHHHHHHHHHH CS
    Cyclin_C  16 asedselrtlakylleltlldydflsyppSliAaaalllarstlnspewtetlehytgyskedlkpcveli 86 
                 ++++ ++ ++++ l+e +   + +++ +p  +Aaa++++a++ +++p ++  + +  g+s   +k  ++++
  CCE30573.1 251 KNQQ-KISKISRELAEKANDISALAGRSPLSVAAACIYMACHLMREPRASLPIAKQAGVSDGTVKTAYKHL 320
                 4445.67777777777776666788888999*****************99999999999999999998876 PP

>> McrBC  McrBC 5-methylcytosine restriction system component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   2.6e-05     0.046     169     209 ..     107     147 ..      90     154 .. 0.80
   2 ?    0.5   0.0      0.15   2.7e+02     121     163 ..     153     195 ..     147     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.6e-05
       McrBC 169 skisekdlqkvqlnrlfarykkvlqlaevilknqsplakqg 209
                 s+ ++++ q+  ++ l++ yk++ +l+e+i+++q+++++++
  CCE30573.1 107 SRTQNNANQDRAQKGLMEAYKMIVSLCETIHMGQNVSNAAK 147
                 344455555556899********************998876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.15
       McrBC 121 veydefsednaenRilksalelllkllrssetlkelrellsil 163
                 v++ +f+++ ++  ++  ++ +++++++++ t ke+ +l+s+ 
  CCE30573.1 153 VDKHKFMKGKPQEVVIAGCIFIACRQNNVPRTFKEIFNLTSVS 195
                 577899**************************99999999876 PP

>> TFIIB_C_1  Transcription factor IIB C-terminal module 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00086       1.5       7      76 ..     127     193 ..     123     206 .. 0.81
   2 ?    3.4   0.1     0.045        80      50      65 ..     281     296 ..     276     315 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00086
   TFIIB_C_1   7 nalevllklsrrdeavleealelakrfvGkrrergervekqeevaaaclmlaaerlrqPvPLaelrvldp 76 
                 +++ +l++ ++++++v + a ++ k  v   + +  +   qe v+a c+ +a+ + + P  ++e+  l +
  CCE30573.1 127 KMIVSLCETIHMGQNVSNAAKHIFKL-VD--KHKFMKGKPQEVVIAGCIFIACRQNNVPRTFKEIFNLTS 193
                 56789999999****99999999875.43..4445566678999***************99999988865 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.045
   TFIIB_C_1  50 vaaaclmlaaerlrqP 65 
                 vaaac+ +a+  +r+P
  CCE30573.1 281 VAAACIYMACHLMREP 296
                 89*********99998 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.018        32      27      51 ..     184     208 ..     171     209 .. 0.85
   2 ?    0.3   0.0      0.39     7e+02      29      51 ..     238     265 ..     227     266 .. 0.80
   3 ?    3.9   0.0     0.028        50      31      49 ..     302     320 ..     301     321 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.018
      HTH_36  27 sqetlakrlglsknTvsraikeLeq 51 
                 +++ + +++ +sk+ v r  k+L +
  CCE30573.1 184 TFKEIFNLTSVSKKEVGRVFKNLQK 208
                 577888899**************86 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.39
      HTH_36  29 etlakrl....gls.knTvsraikeLeq 51 
                 e+l++r+    g +  +++s++ +eL++
  CCE30573.1 238 EDLCSRYvsqlGFKnQQKISKISRELAE 265
                 7888888887787778899999999987 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.028
      HTH_36  31 lakrlglsknTvsraikeL 49 
                 +ak+ g+s+ Tv +a k L
  CCE30573.1 302 IAKQAGVSDGTVKTAYKHL 320
                 8**************9987 PP

>> Trm112p  Trm112p-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.29       3      48 ..      16     136 ..      14     154 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
                 GGCCC-B-TTTHH...C-....................................................................-HHHHHHHHH.TT CS
     Trm112p   3 lllniLaCpackg...pL....................................................................dwealvevaa.lg 29 
                 +l n+L+Cp ck     L                                                                      +al+++++ ++
  CCE30573.1  16 DLNNVLCCPDCKEvppNLieefssgdmvcqscgvvvgtriidtrsewrtfanddhggddpsrvggpqdefvegeqlattvafseskAHKALSRTQNnAN 114
                 6789**********9888888888888888888888888888888888888888888888888888888888888888888888888888888888777 PP

                 ---S-SS----S...CHHTTEE CS
     Trm112p  30 lnelpkekpedy...ellleld 48 
                 +++ +k + e y   + l e+ 
  CCE30573.1 115 QDRAQKGLMEAYkmiVSLCETI 136
                 7778888888887764444444 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.21   3.7e+02      29      50 ..     184     205 ..     178     207 .. 0.83
   2 ?    8.5   0.0   0.00075       1.3      33      50 ..     302     319 ..     280     320 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.21
  HTH_Tnp_ISL3  29 svkavArqlgvSwtTVwrildr 50 
                   ++k++ +++ vS + V r+++ 
    CCE30573.1 184 TFKEIFNLTSVSKKEVGRVFKN 205
                   7777778889**********96 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00075
  HTH_Tnp_ISL3  33 vArqlgvSwtTVwrildr 50 
                   +A+q gvS+ TV+ ++++
    CCE30573.1 302 IAKQAGVSDGTVKTAYKH 319
                   9*************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2720.87
//
Query:       CCE30574.1  [L=1442]
Description: related to ATPases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-69  233.7  13.0    2.6e-69  233.7  13.0    2.1  2  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
    9.3e-24   82.9   1.0    4.4e-22   77.5   0.0    2.7  2  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    3.3e-12   47.2   0.3    3.8e-07   30.6   0.0    3.3  3  Hydrolase        haloacid dehalogenase-like hydrolase
      2e-10   40.6   0.0    2.3e-09   37.2   0.0    2.4  2  Cation_ATPase    Cation transport ATPase (P-type)
    1.8e-08   34.1   0.1    3.9e-08   33.0   0.1    1.5  1  E1-E2_ATPase     E1-E2 ATPase
     0.0039   17.0   0.1      0.013   15.3   0.0    1.8  2  Hydrolase_3      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.8      0.25   7.5e+02     154     199 ..     377     431 ..     359     455 .. 0.50
   2 !  233.7  13.0   8.8e-73   2.6e-69       1     246 [.    1123    1373 ..    1123    1375 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.25
  PhoLip_ATPase_C 154 gtlvftalvlvvnlkvaletktwtl..........iliililg.sillyflflllys 199
                       ++v+t ++ vv l v + + ++++          +  +++ +  i+  ++f+++++
       CCE30574.1 377 NIVVVTLAIYVVILSVGVSMGYVKWkedyeqhawyLDQATVPFyQII--IAFIIMFN 431
                      45555566666666666655555444443333322111111111111..11112222 PP

  == domain 2  score: 233.7 bits;  conditional E-value: 8.8e-73
  PhoLip_ATPase_C    1 vraSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsae 92  
                       +r++DyaiaqFr+L+rLLlvhGrw+y R++k+ily+f+K+++f+l+ + +q yng++g+sly+s++lt++n+lftsl+ i+lgi++qd+sa+
       CCE30574.1 1123 ARVADYAIAQFRYLQRLLLVHGRWNYVRTAKFILYTFWKEMFFYLPTAQYQRYNGYTGTSLYQSTSLTVFNTLFTSLCTICLGIWEQDLSAD 1214
                       689***************************************************************************************** PP

  PhoLip_ATPase_C   93 lllkyPelYklgqknklfnlktfllwileglyqsliifflsylvlddssfsdgktndlqlfgtlvftalvlvvnlkval.etktwtliliil 183 
                       +ll++PelY +gq+nk +n+ +++ w+l g ++++i+++ ++++++  s    ++ +l+++g lvft+ +l++n k+++ et++   ++i++
       CCE30574.1 1215 TLLAVPELYVYGQRNKGLNIYKYIRWMLLGAVEGIIVWYGVWAAYGWIS-PAARDEGLYALGSLVFTVGILWINWKLFIfETHYKPTLVILS 1305
                       ****************************************999998653.499************************999************ PP

  PhoLip_ATPase_C  184 ilgsillyflflllyssllps.....ssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtf 246 
                       +l++   +f++l+++  ++       ++   ++++++ ++p +w++l+lv+++   ++l+ k+lkr++
       CCE30574.1 1306 FLITTWGWFAWLAFLDGVYAPgpdgpYNIRHTFTQHFGRDPVWWATLFLVLAFLGAFELAGKTLKRNL 1373
                       ****9************99999999877777789999999***********************99976 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   1.5e-25   4.4e-22      11      67 .]      90     146 ..      78     146 .. 0.93
   2 ?    2.9   0.5     0.029        88      17      35 ..    1147    1165 ..    1145    1175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 1.5e-25
  PhoLip_ATPase_N  11 kkkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqisplspvtti 67 
                       + y+sN+++Ts+Ytl+ F+pk+L+ qF rv N+YFL++ + q+iP++s+++ +tti
       CCE30574.1  90 GRAYVSNSVRTSRYTLWDFIPKQLIFQFTRVGNFYFLCVGVPQMIPGLSTTGSFTTI 146
                      568****************************************************97 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.029
  PhoLip_ATPase_N   17 NkIsTsKYtlltFlpknLf 35  
                       N+++T+K+ l+tF   ++f
       CCE30574.1 1147 NYVRTAKFILYTFWKEMFF 1165
                       9************877666 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.018        54       4      23 ..     485     504 ..     482     530 .. 0.83
   2 !   30.6   0.0   1.3e-10   3.8e-07      59     196 ..     885    1028 ..     835    1031 .. 0.75
   3 !    9.1   0.0   0.00047       1.4     158     208 ..    1045    1106 ..    1021    1108 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.018
                 EEEESBTTTBCHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   4 vvfDkdGTLttgepsvedvi 23 
                 ++ Dk+GTLt+  +  +++ 
  CCE30574.1 485 IFSDKTGTLTDNIMKFRKLS 504
                 789*******9988877665 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 1.3e-10
                  HHHHETTTE.......HHHHTHHHHHHHH....HCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSE CS
                  xxxxxxxxx.......xxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   59 gfatfigrg.......ayaigkpewltal....dippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdn 144 
                  +fat   +g       +  i +pe+ ++     d ++ l+++ +  +++g++      ++++  +i+d+  + +++ e++ +L++a+i++++ltgd 
  CCE30574.1  885 DFAT---EGlrtllyaQRYIPEPEYQRWKkgyvDASTSLDNRQERIEAAGEEIEQS-LDLVGATAIEDK--LQQGVPETIDRLRRANIKIWMLTGDK 975 
                  3444...3344566667788888888888777877788888888888888776666.699*********..************************** PP

                  HHHHHHHHHHTTGGGESEEEEHHCES.STTTSHHHHHHHHHHHT.STGGGEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxx RF
   Hydrolase  145 petaeraanqlGddyfdaviasdiet.vakpspegkvaaireLq.gkpeevamV 196 
                  +eta  +a+ +   +  +++ ++ ++   +++  +++a+ +eL  g+++ v+++
  CCE30574.1  976 RETAINIAHSAR-ICRPGSDLYILDVaKEEALDAQLLALDEELDnGSIHSVVVI 1028
                  ********9998.33333333333333666677777777777744667666665 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00047
                  GGESEEEEHHCESSTTTSHHHHHHHHHHHT...........STGGGEEEEESSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  158 dyfdaviasdietvakpspegkvaaireLq...........gkpeevamVGDgvnDaaalaa 208 
                  ++f++++ +d + +  +sp +k  ++r  +                ++++GDg+nD+a+++a
  CCE30574.1 1045 QFFSIILRVDSVICCRASPAQKALLVRAVRsslgktkgnknKHRGLTLAIGDGANDLAMIQA 1106
                  4556777777777788889999999999976776777654333556*************987 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   7.8e-13   2.3e-09      14      87 ..     644     733 ..     631     736 .. 0.79
   2 ?    0.1   0.0      0.29   8.7e+02      12      30 ..     964     982 ..     916    1004 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 7.8e-13
  Cation_ATPase  14 kdevkllGnktEsALlvlaeklgldteelree..................tkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkr 87 
                     ++     +++E AL+++a++lg  ++ +r+                   ++++ +i+F+s rKrms+v++  p+++v +++KGA   il r
     CCE30574.1 644 GKVDFQASSPDELALVRAAQELG-YQIVHRSArsitlrvpqssgiaekmtFDILDIIEFSSARKRMSIVVRC-PDGRVSIICKGADSAILPR 733
                    555556789*************3.33333333466777777777777777*********************9.8***************987 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.29
  Cation_ATPase  12 sekdevkllGnktEsALlv 30 
                    ++ + + l+G+k E+A+  
     CCE30574.1 964 ANIKIWMLTGDKRETAINI 982
                    566789999*****99854 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1   1.3e-11   3.9e-08      17     168 ..     227     443 ..     213     447 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.3e-11
                   EEEGGG--TTSEEEEETT-B--SEEEEEEE-S.....EEE-TTTS---S-EE-............................................ CS
  E1-E2_ATPase  17 eidakelvpGDivllkagdrvpaDgrivegsa.....evdesaLTGEslpvek............................................ 64 
                     + +++++GD+v l   + vpaD +++++        +d+ aL GE    +k                                            
    CCE30574.1 227 ATRWSNIKVGDVVRLSRDEGVPADLVLLHSDGenglvYIDTMALDGETNLKTKqvchalescdsiqgianckaefvvedpnpelfnfdgrvtvdgka 323
                   566789***********************444445779*********************************************************** PP

                   ...G-TTEE-TT-EEEE-EEE.EEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT............ CS
  E1-E2_ATPase  65 ...ekgdmvfsGtvvvsgeak.avVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla............ 145
                      + ++ v+ G+++ + +a  + V++tged ++    ++ + +++kk+ l+k ++ ++ +l++ v+++++ v +  + ++++              
    CCE30574.1 324 vplTLNEIVYRGSIMRNTTAAfGLVVNTGEDCKIRM--NSNRHPRAKKPALEKVVNIVVVTLAIYVVILSVGVSMGYVKWKEDYEqhawyldqatvp 418
                   **99************96655279*******99985..555667779************************99999999988888899999999888 PP

                   ..HHHHHHHHHHHHHS-TTHHHHHH CS
  E1-E2_ATPase 146 ..eallralallvaaiPcaLplavp 168
                     ++++ ++ ++  ++P aL +++ 
    CCE30574.1 419 fyQIIIAFIIMFNNVVPLALYITLE 443
                   8888888888888888988888765 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.72   2.2e+03      16      54 ..     950     988 ..     946    1057 .. 0.85
   2 !   15.3   0.0   4.2e-06     0.013     205     237 ..    1090    1122 ..    1061    1132 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.72
                  --HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCC CS
  Hydrolase_3  16 isektkeaikklkekgikvviATGRslravlpvleelgl 54 
                  +++   e+i +l+ ++ik+   TG + +++++++++  +
   CCE30574.1 950 LQQGVPETIDRLRRANIKIWMLTGDKRETAINIAHSARI 988
                  666777899999999999999999999999998887665 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 4.2e-06
                   GEEEEESSGGGHHHHHHSSEEEEETTS-HHHHH CS
  Hydrolase_3  205 eviafGDgeNDieMLeaaglgvAmgnaseevkk 237 
                    ++a+GDg ND++M++a+ +g+ +  ++e +++
   CCE30574.1 1090 LTLAIGDGANDLAMIQASHVGIGISGGQEGLQA 1122
                   589***************999999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.46
# Mc/sec: 9394.00
//
Query:       CCE30575.1  [L=929]
Description: uncharacterized protein CPUR_04424 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   31.5   0.0    1.7e-07   30.8   0.0    1.4  1  CUE       CUE domain
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.19   11.9   0.0    1.3  1  DUF1296   Protein of unknown function (DUF1296)


Domain annotation for each model (and alignments):
>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.8e-11   1.7e-07       6      41 ..      71     106 ..      66     107 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.8e-11
                 HHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHHC CS
         CUE   6 etLkemFPdldeevIravLrasngnvEatinaLLeg 41 
                 + ++emFPd++e ++ ++L+++ng+ + ++ ++ eg
  CCE30575.1  71 SVIREMFPDWSEADVLFALQETNGDENEAVARIAEG 106
                 789******************************998 PP

>> DUF1296  Protein of unknown function (DUF1296)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.2e-05      0.19      12      42 ..      73     103 ..      69     119 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.2e-05
     DUF1296  12 ikEivgkhsdeeIyamLkecnmDpneavqkL 42 
                 i+E+  + s++++  +L+e+n D neav + 
  CCE30575.1  73 IREMFPDWSEADVLFALQETNGDENEAVARI 103
                 8999999*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (929 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 6248.68
//
Query:       CCE30576.1  [L=415]
Description: uncharacterized protein CPUR_04425 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3121.12
//
Query:       CCE30577.1  [L=814]
Description: uncharacterized protein CPUR_04426 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-84  280.8   3.5    1.2e-77  260.7   6.5    2.8  2  Ofd1_CTDD       Oxoglutarate and iron-dependent oxygenase deg
      3e-24   85.5   0.0    9.8e-24   83.9   0.0    1.9  1  2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
    2.7e-13   50.6   0.1    8.3e-13   49.1   0.0    1.9  2  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.23   10.4  17.6       0.36    9.7  17.6    1.1  1  DUF5585         Family of unknown function (DUF5585)
        4.6    6.5   6.7         11    5.3   6.7    1.5  1  NOA36           NOA36 protein
        9.7    4.2  11.3         28    2.6  11.3    1.8  1  DNA_pol_phi     DNA polymerase phi


Domain annotation for each model (and alignments):
>> Ofd1_CTDD  Oxoglutarate and iron-dependent oxygenase degradation C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     9e-06     0.027     107     220 ..     123     234 ..      78     240 .. 0.75
   2 !  260.7   6.5   4.2e-81   1.2e-77       2     252 ..     331     776 ..     330     780 .. 0.97

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9e-06
                 HHH.HHHHSHHHHHHHHHHHSE.EE..-EEEEEEEEE-TTT-EE--BE----GEEEEEEEEE---S.-TTTSTT---EEEEE----------------- CS
   Ofd1_CTDD 107 eLlekllkskafrkwlalitgldll..tsesilarRfrpGkdytLatsteeeeavLevtlnltptk.gWesgevGGyelymagdddeeeDpavYksdde 202
                  L  + l s+ fr+++++itg+ +l  +++++ +  ++pG  + L +++   + ++   l+lt ++  W+ +  G+  l+   ++++++D  v +    
  CCE30577.1 123 ALR-DALYSETFRNYVSDITGCGPLsaKKTDMAVNVYSPG-GFLLCHDDVIGSRRVSYILYLTDPDmPWQPEWGGALRLF-PVQEKKNKDGEVAHVPL- 217
                 445.77889*************87755778899*******.**********99*********965416877555555555.45555555777755322. PP

                 ---EEEEE---EEEEEEE CS
   Ofd1_CTDD 203 ddsvLlslaaswNslslv 220
                  d     ++++wN+ls +
  CCE30577.1 218 PDP-VKVIPPAWNQLSFF 234
                 222.34467777777665 PP

  == domain 2  score: 260.7 bits;  conditional E-value: 4.2e-81
                 HHHHHTTTB-GGGTSHHHHHHHHHHHHHHSEEEESS-B-HHHHHHHHHHH..HHHHHHS----SGGG--T..T-EE-B-TTTEE-EEE-SSS----SSH CS
   Ofd1_CTDD   2 elefLlkylnpeYLtketveelqeqfeeessieledfLkkeiaeklkksleseekekekelpqkseeiek..pWkvagPphkqrylyldseeatekkee 98 
                 +lefLl+y++  YLt++++e++++q+e++s+i+l d+L+k + e+lk ++e++e++    lp+k+  ie+  +Wkva+Pphk+r+ly+ se+ + +++ 
  CCE30577.1 331 DLEFLLRYISAPYLTPDVMEQIADQLEQDSTITLPDILSKAFIERLKAYIEDAETKP---LPEKTATIEEstAWKVAQPPHKHRFLYQLSEDVRASRD- 425
                 789***********************************************7777775...9******999888*************998888876665. PP

                 HHHHHHHHHHH.HHHHSHHHHHHHHHHHSE.EE-EEEEEEEEE-TTT-EE--BE----GEEEEEEEEE---S-TTTS...................... CS
   Ofd1_CTDD  99 edaeeklkeLlekllkskafrkwlalitgldlltsesilarRfrpGkdytLatsteeeeavLevtlnltptkgWesg...................... 175
                     ++l+eLl++ll+s +frkwl+ +t++ +lts++++arRfr+G dytLat ++e    Le+ l++tpt gW ++                      
  CCE30577.1 426 ---ITPLTELLDTLLPSPQFRKWLQIATRC-TLTSQHVMARRFRRGGDYTLATGQTE-PLSLELGLGITPTPGWGEEegnededeeaeeaeeegededg 519
                 ...68*************************.************************96.69***************999********************* PP

                 ................................................................................................... CS
   Ofd1_CTDD 176 ................................................................................................... 175
                                                                                                                    
  CCE30577.1 520 deeeeaagpaadstaskvaetaeapaataistaaqiseaavtsaqavagaaqyfakmpasqaaarallaaalalaeamakesgqadciaiaanaastla 618
                 *************************************************************************************************** PP

                 .................................................................................TT---EEEEE-------- CS
   Ofd1_CTDD 176 .................................................................................evGGyelymagdddeeeD 193
                                                                                                  +vGG e+y+a+d+de++D
  CCE30577.1 619 sfaapeesdaaaeaaeeeppkdkgkgkavdttepvlasteetqqpskdkgkgkavlrsrdntpsiiqedenvpdsldteqvDVGGMEVYLAPDNDENDD 717
                 *************************************************************************************************** PP

                 ------------EEEEE---EEEEEEEEEETTEEEEE----TT-SS-EEEEEEEEEEEE CS
   Ofd1_CTDD 194 pavYksddeddsvLlslaaswNslslvlrdegvlkFvKYvsasakgsrwdvsgeyevks 252
                 +avYks+ ++ds L+ +aaswN+l+lv+rd+g+lkFvKYvs++a+g+rwdv+++++v+ 
  CCE30577.1 718 AAVYKSSGDQDSALFFQAASWNKLTLVMRDRGTLKFVKYVSRKARGDRWDVTAKFGVAD 776
                 *******************************************************9954 PP

>> 2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   3.3e-27   9.8e-24       1      93 []     153     273 ..     153     273 .. 0.71

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 3.3e-27
  2OG-FeII_Oxy_4   1 lsvssYekgdvllnHdDvlegeRrvayilyle...eeWkeddGGaL.llsdde..g...........dvtksivPkwnqlvlFevkes...hsva 75 
                     + v++Y+ g +ll+HdDv +g+Rrv+yilyl+    +W++++GGaL l+  +e  +           d +k i+P+wnql +F+v+++   h+v+
      CCE30577.1 153 MAVNVYSPGGFLLCHDDV-IGSRRVSYILYLTdpdMPWQPEWGGALrLFPVQEkkNkdgevahvplpDPVKVIPPAWNQLSFFAVQPGesfHDVE 246
                     6799**************.9***********865569*********55543332313344444444456****************8642478888 PP

  2OG-FeII_Oxy_4  76 evasvaeke.........RlsisgWfh 93 
                     ev + +++e         R++isgWfh
      CCE30577.1 247 EVYHAETQEqlkkdggrvRVAISGWFH 273
                     8853222111222233339*******9 PP

>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   2.8e-16   8.3e-13       2      96 .]     154     273 ..     153     273 .. 0.92
   2 ?   -3.9   0.0         6   1.8e+04      36      49 ..     790     803 ..     788     807 .. 0.75

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 2.8e-16
                     EEEEE-TT-EEEEE-SS----TT.-.EEEEEEEEE........ET-B--EEE.........................---TT-EEEEE-..B-T. CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfekeegsgqrrltvllyLne....keseeGGelelyekdk...............eavkikpkkgrlvlFesdellp. 76 
                      v++y +g+++ +H+D +      g+rr++++lyL++    +++e+GG+l+l++ ++               + + i+p  ++l +F ++  ++ 
      CCE30577.1 154 AVNVYSPGGFLLCHDDVI------GSRRVSYILYLTDpdmpWQPEWGGALRLFPVQEkknkdgevahvplpdPVKVIPPAWNQLSFFAVQPGESf 242
                     689*************86......78**********9*999999*********999999************999999************877669 PP

                     EEE--B.-SS...........-EEEEEEEEE CS
  2OG-FeII_Oxy_3  77 Hevlpvtkgg...........eRlsltgwir 96 
                     H v++v ++             R++++gw++
      CCE30577.1 243 HDVEEVYHAEtqeqlkkdggrVRVAISGWFH 273
                     9999998655689999999**********98 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6
                     E....ET-B--EEE CS
  2OG-FeII_Oxy_3  36 LnekeseeGGelel 49 
                     L+++++e+GG l +
      CCE30577.1 790 LSDSDDEQGGGLNM 803
                     76767789999987 PP

>> DUF5585  Family of unknown function (DUF5585)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  17.6   0.00012      0.36     154     282 ..     529     665 ..     518     681 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00012
     DUF5585 154 ssvaaassiPttaassavstlvpvsgtvtsavatghPslsta..laqvpssssaart.........aalatlataaqtvataantsdPmsrtlsPsksm 241
                 ++ ++as++  ta ++a++++  ++ ++ +av++++  +++a   a++p+s +aar+          a+a  + +a+ +a aan+++  +   +P    
  CCE30577.1 529 AADSTASKVAETAEAPAATAISTAAQISEAAVTSAQAVAGAAqyFAKMPASQAAARAllaaalalaEAMAKESGQADCIAIAANAASTLASFAAP---E 624
                 33455566666666666666666666666666666655555422689999999999999866655455666667788888888988888855555...5 PP

     DUF5585 242 psdtsasPipatraqaqGltsqvsvdqPvvnttdrptPpsn 282
                  sd++a+ +    ++ +G+ + v +  Pv + t+++  ps+
  CCE30577.1 625 ESDAAAEAAEEEPPKDKGKGKAVDTTEPVLASTEETQQPSK 665
                 6788888899999999*****************99998886 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.7    0.0036        11     270     298 ..     496     524 ..     477     533 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0036
       NOA36 270 ddegdedddddddeedddeeeddedeeee 298
                 ++eg+ed+d++ +e +++ e++d deeee
  CCE30577.1 496 EEEGNEDEDEEAEEAEEEGEDEDGDEEEE 524
                 45566666666665555555555554444 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  11.3    0.0094        28     642     673 ..     497     528 ..     493     571 .. 0.47

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0094
  DNA_pol_phi 642 dedeeddeeeeeeddeededseedddeeesde 673
                  +e +ed++ee+ee++ee ed++ d++ee    
   CCE30577.1 497 EEGNEDEDEEAEEAEEEGEDEDGDEEEEAAGP 528
                  33333333333333333333332222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1269  (0.0707792); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 5419.17
//
Query:       CCE30578.1  [L=166]
Description: uncharacterized protein CPUR_04427 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-14   53.0  10.6    2.7e-14   53.0  10.6    1.6  2  CFEM           CFEM domain
  ------ inclusion threshold ------
        1.4    7.1   6.4        1.5    7.0   6.4    1.0  1  RAP1           Rhoptry-associated protein 1 (RAP-1)
        2.6    8.1  14.5        3.7    7.6  14.5    1.2  1  Herpes_capsid  Gammaherpesvirus capsid protein


Domain annotation for each model (and alignments):
>> CFEM  CFEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0  10.6   4.6e-18   2.7e-14       2      66 .]      22      88 ..      21      88 .. 0.95
   2 ?   -3.1   0.0       1.5     9e+03      37      37 ..     105     105 ..      97     121 .. 0.51

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 4.6e-18
                TTTS-GGGTCGGG---TTSS...S-TT-HHHHHH-HHHHHHHHHHHHHH--THHHHHHHHHHHHHHH CS
        CFEM  2 lsalPkCaqdClaeavkkss..gCakddtaCiCtnaklqseitdCvtaaCtaeealaavnaasslCa 66
                l+++PkCa +C+ + ++ ++  gCa +d+aC+C+n+++ s i++C+++ C+ ++ ++++++a+ lC+
  CCE30578.1 22 LDKIPKCAYSCVSSYITGTNiaGCAPADIACVCGNQEFLSGISCCLEKDCSKDDIKSTIDFAAGLCN 88
                799***********998855599*******************************************6 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.5
                 H CS
        CFEM  37 l 37 
                  
  CCE30578.1 105 A 105
                 2 PP

>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.4   0.00026       1.5     109     182 ..      65     147 ..      34     161 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00026
        RAP1 109 aileeddskddl....efkasqsvv.ktskpkststeslksssdskskasaksn....vksaskyGesssseesatdsskasa 182
                 + le+d skdd+    +f a   ++    +pk    + +++ss ++s++ a ++    + s+s+   s s   +a +++ a+a
  CCE30578.1  65 CCLEKDCSKDDIkstiDFAAGLCNAsGVKTPKELICKKNAASSGASSSSGAAAAtatpTASGSQTSASGSEAPAASKTNAAAA 147
                 56777777777522227877554443445565555555555544444443333300002333433333333333333333322 PP

>> Herpes_capsid  Gammaherpesvirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  14.5   0.00063       3.7     109     157 ..      99     148 ..      73     154 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00063
  Herpes_capsid 109 gttgGgsdssasGasGgsastlsSgpsss.aaasglssgasStsdtasra 157
                     +   + +s+as +sG++a+t++ + s+s ++asg+ + a+S++++a+  
     CCE30578.1  99 ICKKNAASSGASSSSGAAAATATPTASGSqTSASGSEAPAASKTNAAAAP 148
                    45556677888888999888888777755378999999999999998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1060  (0.0591221); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1196.54
//
Query:       CCE30579.1  [L=402]
Description: related to ribosomal protein YmS2, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-22   81.4   4.7    1.8e-22   81.0   4.7    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
      2e-05   24.4   0.2    0.00011   22.0   0.2    2.0  1  Abhydrolase_1  alpha/beta hydrolase fold
      0.001   18.4   0.0     0.0014   17.9   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.043   13.9   0.1       0.12   12.4   0.1    1.7  1  Thioesterase   Thioesterase domain
       0.17   11.7   0.1       0.33   10.8   0.1    1.4  1  Lipase_3       Lipase (class 3)


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   4.7   5.1e-26   1.8e-22       2     219 ..     121     372 ..     119     373 .. 0.66

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 5.1e-26
                    EEE--GC.....GC..HHHHHHHHCCT.CEEEEE--TTST...S-GGCS--HHHCHHHHHHHCCTT...........TTSEEEEEETCHHHHHHHH CS
  Abhydrolase_6   2 lllHGagssassWl..vapLaallaag.vhvlapDlpGhG...rsdpppldledladlaalldelaa.........gggpvvlvGHSlGGalalaa 82 
                    +  HGagss+ s++   ++++++l++  +  la+D++ hG   ++++  ldl+  a+l+  l++++          + +p+vlvGHSlGGa+++  
     CCE30579.1 121 VAHHGAGSSGLSFAvvSSEIRNRLPSAgI--LAVDCRDHGstvSPEGTELDLRL-ATLSGDLHHVILstqkhmgwpQMPPIVLVGHSLGGAVVTD- 212
                    4459*********6556688666666659..*********44444555566655.55533333333356668999****************9999. PP

                    HHCC..................EEEEES-..----TTTS----TTHHHHHHTT-CCCCHCCH...........S-HSCCCCHHH...C.CCCHCHC CS
  Abhydrolase_6  83 apla................lvvgvlldppptalpagllaaalelllallallrllawlsre...........plprlfladed...a.daawrar 147
                      la                +v+g ++d+       +++a + + + ++ +++++ +w++r            ++p l+ +de+   a   +wr++
     CCE30579.1 213 --LAqrgtlgntllgyavldVVEGSAIDA-----LKSMQAYLSKRPGGFSSVETAVEWHVRSrtirnvvsaraSVPALLRRDETidpArPWRWRTN 301
                    ..553336777666655654444466666.....3333444444444444455556777333344455554443443444444444324799**** PP

                    CCGHHHHCCHHCHTTCCHHTT-TTGC.EEECTT-CHHHHCHHCCCHSTTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 148 larlaallaglgllpaaawadlpvpl.lvlggeDplvprllerllaqagarlpvvlpgaGHlphleepdevae 219
                    la+ +a++ g++      +  +     l+l+g+D+l  +l    ++  +++l +vl++aGH++h+++p+++a+
     CCE30579.1 302 LAATQAFWEGWFVGLSKKFLSAKGGKlLLLAGTDRLDTELTIGQMQ-GKYTL-QVLADAGHFLHEDSPEQTAA 372
                    ************6655555555555526669*******99555555.*****.******************97 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.2     3e-08   0.00011       1     256 [.     118     366 ..     118     367 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 3e-08
                    SEEEEE-STTTCGGGGTTGHHHHHHHHT..TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH.HH...HHHCTTSS...EEEEEETHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakd..gfdvillDlrGvgySspapacinddygtasvaddld.ri...ldalgddk...ltlvGhSmGGmia 87 
                    p++v +hG + s+ ++a   + + +  +   + ++++D r +g++  +  +   d ++a++  dl+  i   + + g+ +   ++lvGhS+GG+++
     CCE30579.1 118 PLFVAHHGAGSSGLSFAV--VSSEIRNRlpSAGILAVDCRDHGSTVSPEGTE-LDLRLATLSGDLHhVIlstQKHMGWPQmppIVLVGHSLGGAVV 210
                    578889999999999999..99999988999999999999999987766654.48899999999997667999999997644478*********** PP

                    HHHHHHH...GGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH...HCHHHCCHHHHHHH CS
  Abhydrolase_1  88 layaaey...perVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf...pdkskrfpssgsdn 177
                    + +a++    +      vl+         +  +  ++ks++ ++ +    +    +++ +  ++++++   ++  +      +d + ++ +  +++
     CCE30579.1 211 TDLAQRGtlgNTLLGYAVLDVV-------EGSAIDALKSMQAYLSKRPGGFSSVETAVEWHVRSRTIRNVVSARASVPAllrRDETIDPARPWRWR 299
                    *********7777777777777.......7778899999999999999999999999999999999999988876663354344444444433333 PP

                    CHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 178 asslatgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafleg 256
                     +  at  + ++e+w + +s k+l   ++      + l+++g +D+l+++  + +++++    +l v++dagH+++ + 
     CCE30579.1 300 TNLAAT--QAFWEGWFVGLSKKFLSAKGG------KLLLLAG-TDRLDTELTIGQMQGK---YTLQVLADAGHFLHEDS 366
                    333333..36*******************......8888866.**************88...899*********99886 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     4e-07    0.0014      33      96 ..     148     216 ..     118     308 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4e-07
  Hydrolase_4  33 avyalDhrGhGrse...gkrghvpsfddyvdDlaafvekvk..eehpel.plfllGhSmGGliallyllr 96 
                   ++a+D r hG +    g   ++ ++ ++  Dl+ ++   +    +p+  p++l+GhS+GG++++ +++r
   CCE30579.1 148 GILAVDCRDHGSTVspeGTELDL-RLATLSGDLHHVILSTQkhMGWPQMpPIVLVGHSLGGAVVTDLAQR 216
                  56788888888888433333322.56788899999985555124455559****************9987 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.4e-05      0.12       2      86 ..     118     216 ..     117     218 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.4e-05
                   EEEEE--TTC.CSGGGHHHHHHCTTC..EEEEEEECSTTST.....SHHHCTTCHHHHHHHHHHHHHHH-.....SSS.SEEEEEETHHHHHHHHHH CS
  Thioesterase   2 pLflfppagG.sasvfrslasklsdp..vvevlavqlpgre.....rdepplesieelaaeyaealrqiq.....peg.PyalfGhSlGgllAfevA 84 
                   pLf+ +++ G s  +f+  +s+++ +   + +lav  ++++     +++++   +++l   +   ++++q     p+  P +l+GhSlGg++  ++A
    CCE30579.1 118 PLFVAHHGAGsSGLSFAVVSSEIRNRlpSAGILAVDCRDHGstvspEGTELDLRLATLSGDLHHVILSTQkhmgwPQMpPIVLVGHSLGGAVVTDLA 214
                   79999999997788999999999998888888888888888767664444444555555555555555552222222349***********988887 PP

                   HH CS
  Thioesterase  85 rq 86 
                   ++
    CCE30579.1 215 QR 216
                   65 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   9.3e-05      0.33      66      78 ..     197     209 ..     174     216 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.3e-05
                 EEEEEEETHHHHH CS
    Lipase_3  66 sivvtGHSLGgal 78 
                  iv++GHSLGga+
  CCE30579.1 197 PIVLVGHSLGGAV 209
                 69**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2814.32
//
Query:       CCE30580.1  [L=157]
Description: uncharacterized protein CPUR_04429 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1211.96
//
Query:       CCE30581.1  [L=399]
Description: uncharacterized protein CPUR_04430 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-08   34.6   7.8    2.2e-08   34.1   7.8    1.3  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   7.8   1.2e-12   2.2e-08       2      38 ..      57      96 ..      56      98 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.2e-12
                S-HHHHHCT---ST..SSSS.-HHHHHCTHHHCCCCTCCC CS
     Zn_clus  2 aCdnCrkkKvKCda..kkPa.CsnCkklnleCtfysessk 38
                aC +Cr++K++C a  ++P+ C nC++l +eC+fy+  ++
  CCE30581.1 57 ACSHCRRRKIRCIAspDTPSrCVNCIRLKKECSFYPVDQQ 96
                9*************9*9999***************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2800.34
//
Query:       CCE30582.1  [L=143]
Description: uncharacterized protein CPUR_04431 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-05   25.6   1.7    1.2e-05   25.6   1.7    1.8  2  DUF202    Domain of unknown function (DUF202)
  ------ inclusion threshold ------
      0.026   15.0   0.0      0.043   14.3   0.0    1.4  1  FtsX      FtsX-like permease family


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   1.7   1.4e-09   1.2e-05       5      64 ..      13      68 ..      10      72 .. 0.80
   2 ?   -1.1   0.1      0.29   2.6e+03      50      50 ..     130     130 ..     107     142 .. 0.53

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.4e-09
      DUF202  5 AnERTf.LaWlRtslalialglallrffltgepsalgkilglilivlgiltllvglvrylr 64
                A++RTf  a++Rt+l+ ++++l++l++f ++       ++g++++v g+++llv+ +r ++
  CCE30582.1 13 AAQRTFeGAYMRTALGQFSFALVILKIFTEEFY-----AIGALFAVYGFAVLLVAGYRRYQ 68
                89999955******************9544333.....56*********999996666544 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.29
      DUF202  50 l 50 
                 +
  CCE30582.1 130 A 130
                 1 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.8e-06     0.043      17      91 ..      36     142 ..      33     143 .] 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.8e-06
        FtsX  17 vlllllteillitlvalviGlglgllaaqllsdvllssvf................................sselkisidlitvliiivlllllalla 83 
                 +l++++ e  +i+++ +v G++++l+a +  +++  +++                                 + + k+ +++ tvl++ +++l  +++ 
  CCE30582.1  36 ILKIFTEEFYAIGALFAVYGFAVLLVAGYRRYQGNRQFFTtrdldldldmstdtdtdtgmgadrrvqvqvqvQVRNKFKTSGDTVLLMTGVSLGAYVVL 134
                 6789999999*************************99966777777777777777777777777766655444************************** PP

        FtsX  84 gllsiski 91 
                 ++l  + +
  CCE30582.1 135 MVLTWRLV 142
                 99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1103.08
//
Query:       CCE30583.1  [L=1355]
Description: uncharacterized protein CPUR_04432 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.059   14.2   0.3      0.059   14.2   0.3    4.6  4  zf-C2H2_4   C2H2-type zinc finger
       0.14   12.6   8.7       0.38   11.1   8.7    1.7  1  Bud13       Pre-mRNA-splicing factor of RES complex
       0.34   11.5  21.4       0.49   11.0   0.2    4.7  4  zf-C2H2     Zinc finger, C2H2 type
          9    6.2   8.9         22    4.9   8.9    1.6  1  Suf         Suppressor of forked protein (Suf)


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   2.0     0.075   3.4e+02       1      20 [.     806     827 ..     806     829 .. 0.71
   2 ?    0.7   0.1      0.29   1.3e+03       1      20 [.     834     858 ..     834     860 .. 0.83
   3 ?   -0.5   1.8      0.69   3.1e+03       3      24 .]     870     893 ..     868     893 .. 0.76
   4 ?   14.2   0.3   1.3e-05     0.059       2      23 ..     941     962 ..     941     963 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.075
   zf-C2H2_4   1 fkCpiCgksFsskka..LlrHl 20 
                 f+Cp+C +  +++k   + +H+
  CCE30583.1 806 FECPLCYEKKKCQKPsdWTKHV 827
                 89****5555555555699986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.29
   zf-C2H2_4   1 fkCpi..C...gksFsskkaLlrHl 20 
                 f+C++  C   +k F++k ++ rH 
  CCE30583.1 834 FTCTWasCrdaTKMFKRKADWVRHE 858
                 6777777888899***********6 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.69
   zf-C2H2_4   3 Cpi..CgksFsskkaLlrHlkthH 24 
                 C+i  C+ ++ +++++l+Hl + H
  CCE30583.1 870 CDIdgCRHTCYRRDNFLQHLVREH 893
                 888889555558888*****9988 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 1.3e-05
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkth 23 
                 +C++Cg +F+++k+L  Hl +h
  CCE30583.1 941 PCRFCGDVFPTWKKLTVHLGKH 962
                 6******************999 PP

>> Bud13  Pre-mRNA-splicing factor of RES complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   8.7   8.5e-05      0.38      38     123 ..    1025    1110 ..    1020    1112 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.5e-05
       Bud13   38 ewgkGlvq.keekekrleelekekkkplaryaddedlneelkekerwdDPmaaflkkkkkkkkkkskkkkpkykgpaappNRfgIkP 123 
                  e +k + q ++e+ +r+++++++++++l r+ +d +  ++l+  + +  P+    +++ +++++++++++++y+g  ++   fgI+P
  CCE30583.1 1025 ERQKKQQQeQQEQGQRQQQQQQQEQQQLLRHSYDGQHGTSLRPPNLFAFPVLPTGSESYQQQQQQQQQQQQTYNG-RFEDIVFGIQP 1110
                  2222223303333344455555666789****************************9999999988888999*99.99999999998 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   1.9     0.095   4.2e+02       1      20 [.     806     827 ..     806     829 .. 0.93
   2 ?    6.7   0.2    0.0025        11       1      23 []     834     862 ..     834     862 .. 0.89
   3 ?    3.3   2.2     0.029   1.3e+02       3      23 .]     870     893 ..     868     893 .. 0.91
   4 ?   11.0   0.2   0.00011      0.49       3      23 .]     942     962 ..     941     962 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.095
                 EEETTTT..EEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCg..ksFkrksnLkrHi 20 
                 ++Cp C   k++  +s+ ++H 
  CCE30583.1 806 FECPLCYekKKCQKPSDWTKHV 827
                 89*******************6 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0025
                 EEET..TTT...EEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCg...ksFkrksnLkrHirt.H 23 
                 ++C+   C    k+Fkrk + +rH +  H
  CCE30583.1 834 FTCTwaSCRdatKMFKRKADWVRHENEgH 862
                 788888888999************98877 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.029
                 ET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   3 Cp..dCgksFkrksnLkrHirt.H 23 
                 C+  +C  ++ r++n+ +H+ + H
  CCE30583.1 870 CDidGCRHTCYRRDNFLQHLVReH 893
                 88889**************99888 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00011
                 ETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                 C  Cg +F+++  L++H+ +H
  CCE30583.1 942 CRFCGDVFPTWKKLTVHLGKH 962
                 9****************9988 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   8.9    0.0048        22     168     240 ..    1023    1096 ..    1019    1116 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0048
         Suf  168 kqeeekallqkkeeqaasleeskvpqaqeskkrklesedss.vkkPdklqmvespkkgaagrrleqqrksessk 240 
                  +qe++k+++q+++eq + ++++++++ q+  + +++ ++ + +++P+ +++   p+ + ++++++qq++++++ 
  CCE30583.1 1023 EQERQKKQQQEQQEQGQRQQQQQQQEQQQLLRHSYDGQHGTsLRPPNLFAFPVLPTGSESYQQQQQQQQQQQQT 1096
                  45566656555555555545555555555555666555555799999999998877666666655555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2205  (0.122985); expected 358.6 (0.02)
Passed bias filter:                     1009  (0.0562775); expected 358.6 (0.02)
Passed Vit filter:                       152  (0.00847788); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.28u 0.31s 00:00:01.59 Elapsed: 00:00:00.46
# Mc/sec: 8819.15
//
Query:       CCE30584.1  [L=767]
Description: related to calcium-related spray protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.2e-136  453.3  16.6   8.6e-136  453.0  16.6    1.1  1  TRP       Transient receptor potential (TRP) ion channel
    1.9e-38  132.0   1.2    3.4e-38  131.2   1.2    1.4  1  TRP_N     ML-like domain
  ------ inclusion threshold ------
       0.91    9.6   0.0       0.91    9.6   0.0    2.2  2  FtsL      Cell division protein FtsL


Domain annotation for each model (and alignments):
>> TRP  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.0  16.6  1.4e-139  8.6e-136       1     424 [.     177     641 ..     177     643 .. 0.94

  Alignments for each domain:
  == domain 1  score: 453.0 bits;  conditional E-value: 1.4e-139
         TRP   1 vkwvtaviaglallasnasavastlgnsn........aaahvaasvlslflyfQsvafigmlsvnyPpvlaawtqnfaWsmglirvsfmqkiinwyvqs 91 
                 v++++a+iag+al+++++sa+ ++l+ ++        a a+v+ s+ + +++fQ +a+++mlsv+yP++++++++nfa+s+ +i++s mq+ i+ ++  
  CCE30584.1 177 VSYIAAGIAGAALVMTGISALGAALSGGTaslggsgmATAAVSPSFSETMGWFQGMAMNSMLSVQYPQIYRSFAKNFAFSAAVIPWSGMQSAIDGFRSH 275
                 899************999999999888888999999888899999****************************************************** PP

         TRP  92 tgG...........tatlvlsssstssvsv.....kral...............krges.k.slpessskl..vrGikrvaekagiestnafmtgllff 155
                 tgG           +atlv+ +++t s ++     kra+               + +e+ + ++++ ++ +  v+Gi+++ae++ ++++n+fmt ll +
  CCE30584.1 276 TGGdldqdsyayleKATLVFPDGTTRSPNQglfkfKRAVdafvdlasreietsvNSTEPvSsGSDT-NELQhkVKGIQAFAEQLLVPKSNIFMTALLLV 373
                 ****************************99777664777777888888888886334554433333.33332347************************ PP

         TRP 156 liliallvvlvllfKlllellarkklikedrlkefrknwlgilkgallrlilifffqllvlclfeftqrdsaavvvlAvillalflgvllffafrvlit 254
                 +ilia +v+++ll+K++le++a ++ +++++lk frk+++g ++++++ lil+++++++++c+f+ft++ds  ++ lA+++la+f+g+l+ff+++++++
  CCE30584.1 374 AILIATIVLGILLVKVILETWALFG-SFPQSLKGFRKHYWGSIARTITSLILLLYGIWVLYCVFQFTRGDSVVAKTLAGVTLAIFTGILGFFTWKIWSV 471
                 *************************.89*********************************************************************** PP

         TRP 255 arkskrlhknpaylLysdkkvlnkyGflyeqyrasrywffvpllvylfvkalfialaqgsGkvQvialliiEllylvlliwlrPyedkrtnvlniiisv 353
                  ++ k++++++   +ysdk+++ ky+++y+ y+++++w+fvp+++y+f+k++ ia+++g+G++Q+i +++iE l+l+ll+w+rP+e++++n++niii++
  CCE30584.1 472 VHQLKQKEGDVD-AMYSDKSIWVKYSLFYDAYKKQYWWLFVPTIFYTFAKGVAIAAGDGHGMAQTISQVVIEGLMLCLLLWSRPFERRSSNIINIIIQT 569
                 ******999999.************************************************************************************** PP

         TRP 354 vkvlnvilllaFseefglseivktvvGvvlivinavlalvlliliivnaiiallsknpdrryrp.akddres 424
                 v+vl+++++l+F+eefg+++++kt++Gvvli+++++l+  l+ili++na+++++  np+r++r+ a+++r++
  CCE30584.1 570 VRVLSICCILVFVEEFGIKQTTKTITGVVLIAVQSTLTATLAILIVWNALTVCCTMNPHRKRRKeAEKIRRD 641
                 ************************************************************777779999987 PP

>> TRP_N  ML-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.2   1.2   5.6e-42   3.4e-38       1     138 [.      34     171 ..      34     172 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.2 bits;  conditional E-value: 5.6e-42
       TRP_N   1 lvtssfenClensqftaskfdvtftpdnktvvfnvtgtssienkavtlelkveaygyevvnetvdpCdan..vkglCPlgpgfkinasgvlkvseevvs 97 
                 l+t+ f++C ++ +++++++d++++++nktv f+v+g+s++e++ vt+ lkveayg +v++++++pCd++  ++ lCPl+ g +++a+g++++++++++
  CCE30584.1  34 LKTNGFSDCGSDPSVKMERVDISYNNENKTVSFDVAGSSTKEQN-VTAVLKVEAYGNTVYSNSFNPCDKStyFERLCPLPVG-TFAARGNQQIPAQYAN 130
                 6899****************************************.*************************9***********.**************** PP

       TRP_N  98 eipsiaYsipdldatvrvriystgeateiaCvsatitngkt 138
                 ++p+ia+++pd++a +++++  +++++ +aC+++++tngk+
  CCE30584.1 131 MVPGIAFQVPDISAHATLQLIGADDKNVVACFQSDVTNGKS 171
                 *********************88899*************97 PP

>> FtsL  Cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   1.2       1.7     1e+04      15      28 ..     367     380 ..     361     389 .. 0.60
   2 ?    9.6   0.0   0.00015      0.91      11      55 ..     602     646 ..     595     647 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.7
        FtsL  15 vlllllllvlvsav 28 
                 ++ lll+++l++ +
  CCE30584.1 367 MTALLLVAILIATI 380
                 44455666665544 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00015
        FtsL  11 svgkvlllllllvlvsavavvlithqtRqlvselekllserdkLe 55 
                  +++++  l++l++++a++v  +    R+  +e ek+ ++ d+L+
  CCE30584.1 602 VQSTLTATLAILIVWNALTVCCTMNPHRKRRKEAEKIRRDMDNLT 646
                 56788999***************************9999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1032  (0.0575604); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.40
# Mc/sec: 5683.58
//
Query:       CCE30585.1  [L=317]
Description: related to DRPLA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0019   18.3   0.1     0.0019   18.3   0.1    2.6  3  Myb_DNA-binding  Myb-like DNA-binding domain
     0.0029   17.7  11.3     0.0031   17.6  11.3    1.2  1  TFIIA            Transcription factor IIA, alpha/beta subunit
  ------ inclusion threshold ------
      0.016   15.4   4.1      0.039   14.2   0.1    3.2  3  Myb_DNA-bind_6   Myb-like DNA-binding domain
      0.033   13.2   9.0      0.038   12.9   9.0    1.2  1  DUF2722          Protein of unknown function (DUF2722)
       0.09   13.1   0.6         11    6.4   0.2    2.5  2  MazG-like        MazG-like family
       0.72    9.4  22.2          1    8.9  22.2    1.1  1  Spt20            Spt20 family
        3.1    6.5   3.9        3.6    6.3   3.9    1.1  1  Presenilin       Presenilin


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   7.4e-07    0.0019       3      44 ..      20      60 ..      18      62 .. 0.88
   2 ?   -2.9   0.0       3.2   8.2e+03      18      30 ..      85      98 ..      77      99 .. 0.70
   3 ?   -1.2   0.1      0.92   2.4e+03      21      30 ..     224     233 ..     213     246 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.4e-07
                     SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding  3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44
                     +Wt+eEd+lL+++   +   W++ ++ l+gR+  +c+ r++ 
       CCE30585.1 20 PWTAEEDDLLIQLKGIYE-GWNETLDVLPGRSLGSCQWRYQL 60
                     8*********98887765.6*****************99996 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.2
                     HHTTC.HHHHHHHH CS
  Myb_DNA-binding 18 khGnr.WkkIaerl 30
                     ++ ++ W+ I e++
       CCE30585.1 85 RLKEDiWSQIGEEM 98
                     45544599999887 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.92
                      TCHHHHHHHH CS
  Myb_DNA-binding  21 nrWkkIaerl 30 
                      n W+kI + l
       CCE30585.1 224 NMWAKIGNVL 233
                      56***98855 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6  11.3   1.2e-06    0.0031     186     237 ..     142     184 ..     104     292 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
       TFIIA 186 qalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqeesqqaqqasqeqvagsq 237
                 q++a  qqq   qqqq+qqqq+q qq q+qq qq++ qq+q a        +
  CCE30585.1 142 QVQAPRQQQV--QQQQVQQQQVQRQQVQQQQVQQQQVQQQQGA------R-R 184
                 1221112221..1112221211111112221111111111111......1.1 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.5e-05     0.039       1      41 [.      21      60 ..      21      74 .. 0.88
   2 ?    0.9   0.1      0.22   5.6e+02      13      28 ..      83      99 ..      74     127 .. 0.78
   3 ?   -1.7   0.2       1.4   3.6e+03      17      28 ..     223     234 ..     206     244 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.5e-05
  Myb_DNA-bind_6  1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwkn 41
                    Wt+eEd++L++l   y   W++  + l+ R+  +c+ r++ 
      CCE30585.1 21 WTAEEDDLLIQLKGIY-EGWNETLDVLPGRSLGSCQWRYQL 60
                    ****************.679999999955999999999975 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
  Myb_DNA-bind_6 13 vekygnd.WknIaealn 28
                    +e+   d W++I e+++
      CCE30585.1 83 YERLKEDiWSQIGEEMS 99
                    444433349***99986 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.4
  Myb_DNA-bind_6  17 gndWknIaealn 28 
                      n W +I + l+
      CCE30585.1 223 RNMWAKIGNVLK 234
                     345666665554 PP

>> DUF2722  Protein of unknown function (DUF2722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   9.0   1.5e-05     0.038      15      50 ..     147     182 ..     138     278 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
     DUF2722  15 sseqvskqqqkkesskqgsqqeqksqqqqqsqtete 50 
                  ++qv++qq ++++ ++++ q+q+ qqqq +q++  
  CCE30585.1 147 RQQQVQQQQVQQQQVQRQQVQQQQVQQQQVQQQQGA 182
                 455666666666666655555555555555553332 PP

>> MazG-like  MazG-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2    0.0042        11       7      31 ..      82     106 ..      78     110 .. 0.85
   2 ?    4.1   0.0     0.021        54       8      28 ..     218     238 ..     216     245 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0042
   MazG-like   7 aiElLkaellksveelfkallkgse 31 
                 a+E Lk +++++++e ++++++++e
  CCE30585.1  82 AYERLKEDIWSQIGEEMSMVWSEAE 106
                 78***************98887655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.021
   MazG-like   8 iElLkaellksveelfkallk 28 
                 +E+Lk +++ ++++++k  ++
  CCE30585.1 218 YEMLKRNMWAKIGNVLKIPWE 238
                 59**************97665 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  22.2   0.00039         1     103     142 ..     144     182 ..     126     209 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00039
       Spt20 103 ktqdqkqsqqnqqqqqqqqqqqqqqqqqqeqqqqqnekds 142
                 +  + +q+ q+qq qqqq q qq+qqqq +qqq+q+++ +
  CCE30585.1 144 QA-PRQQQVQQQQVQQQQVQRQQVQQQQVQQQQVQQQQGA 182
                 12.2222223444444444444444443333333333333 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.9    0.0014       3.6     242     284 ..     148     179 ..      85     234 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0014
  Presenilin 242 ekkkeeasesskeeeseeesseksaqsseseeeseeesseaes 284
                 +++            ++++ ++++ q+++ ++++ ++++ +++
  CCE30585.1 148 QQQ-----------VQQQQVQQQQVQRQQVQQQQVQQQQVQQQ 179
                 111...........11111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3197  (0.178314); expected 358.6 (0.02)
Passed bias filter:                      923  (0.0514808); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 2251.17
//
Query:       CCE30586.1  [L=153]
Description: uncharacterized protein CPUR_04435 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-07   31.5   3.4    7.2e-05   22.9   0.0    2.3  2  Myb_DNA-binding  Myb-like DNA-binding domain
    4.2e-07   30.1   5.6     0.0013   18.9   0.1    2.3  2  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   1.5   0.00025       2.2       4      36 ..      12      47 ..      11      51 .. 0.84
   2 !   22.9   0.0     8e-09   7.2e-05       3      44 ..      91     131 ..      89     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00025
                     SBHHHHHHHHHHHHHHT.TCHHHHHHHHT..SS-HH CS
  Myb_DNA-binding  4 WteeEdelLleavkkhG.nrWkkIaerlg..gRtek 36
                     W+ e  + L+++ ++   + W++Ia +++  +R ++
       CCE30586.1 12 WSDEKKDELARLYEMNKeEMWALIAAEMPvlWRQAE 47
                     99999999999999977666********98877665 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 8e-09
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44 
                      +W+ +E+  L  + +  G  Wk I++ l+gR++ +c s++++
       CCE30586.1  91 EWSGDEERVLFSYQRS-GMEWKHISRFLPGRSASSCNSYYHK 131
                      7999999999999988.999********************87 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   1.9   1.3e-05      0.11       1      32 [.      12      46 ..      12      53 .. 0.84
   2 !   18.9   0.1   1.5e-07    0.0013       1      54 [.      92     141 ..      92     147 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
  Myb_DNA-bind_6  1 WteeEdeiLlklvekygn.dWknIaealn..rRtp 32
                    W++e +++L++l+e++    W +Ia +++   R++
      CCE30586.1 12 WSDEKKDELARLYEMNKEeMWALIAAEMPvlWRQA 46
                    ***************96527******998665555 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.5e-07
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLrpkisrkkwsk 54 
                     W+ +E++ L + +++ g +Wk+I++ l+ R++++c  ++++++      ++w++
      CCE30586.1  92 WSGDEERVLFS-YQRSGMEWKHISRFLPGRSASSCNSYYHKQI---ATGPAWPQ 141
                     77788888877.567789*********55**********9944...23444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1329.33
//
Query:       CCE30587.1  [L=242]
Description: related to DRPLA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0022   18.2   2.5      0.053   13.8   0.0    3.1  3  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0025   18.0   2.6       0.25   11.6   0.0    2.8  3  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.15   1.4e+03      13      27 ..       3      18 ..       1      35 [. 0.65
   2 !   13.8   0.0     6e-06     0.053       1      57 [.      91     142 ..      91     145 .. 0.72
   3 !    4.1   0.1    0.0063        56       1      28 [.     137     165 ..     137     177 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.15
  Myb_DNA-bind_6 13 vekygnd.WknIaeal 27
                    +e+  +d W +Ia+++
      CCE30587.1  3 YERLKKDiWLQIATEM 18
                    5555555599999987 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 6e-06
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLrpkisrkkwskeed 57 
                     W+ +E+ iL   +++    W++I++ l+ R+p +c++ +   L    + ++ws+e +
      CCE30587.1  91 WSGDEEGILF-ACRDAKMSWNQISDRLPGRNPRSCQRQHSL-L---ARGPAWSQERK 142
                     5555666655.47888899********55*******98766.5...35666777665 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0063
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygn.dWknIaealn 28 
                     W++e + +L kl+e      W +I ++l+
      CCE30587.1 137 WSQERKNKLCKLYESLKPtMWAKIGDQLH 165
                     89999999999999988547***999986 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         1   9.1e+03       3       8 ..      21      26 ..      20      27 .. 0.81
   2 !   11.6   0.0   2.8e-05      0.25      21      39 ..     107     125 ..      89     127 .. 0.78
   3 !    5.9   0.1    0.0017        15       3      30 ..     136     164 ..     134     174 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1
                     SSBHHH CS
  Myb_DNA-binding  3 kWteeE 8 
                      Wte E
       CCE30587.1 21 VWTEAE 26
                     6**988 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.8e-05
                      TCHHHHHHHHTSS-HHHHH CS
  Myb_DNA-binding  21 nrWkkIaerlggRtekqcr 39 
                       +W+ I++rl+gR + +c+
       CCE30587.1 107 MSWNQISDRLPGRNPRSCQ 125
                      47****************7 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0017
                      SSBHHHHHHHHHHHHHHT.TCHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhG.nrWkkIaerl 30 
                      +W++e  ++L ++ + +    W+kI + l
       CCE30587.1 136 AWSQERKNKLCKLYESLKpTMWAKIGDQL 164
                      7*****************888****8844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2044.05
//
Query:       CCE30588.1  [L=304]
Description: related to DRPLA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-14   52.0   9.7    1.2e-06   28.6   0.2    4.2  4  Myb_DNA-binding  Myb-like DNA-binding domain
    2.9e-09   37.0   3.9     0.0019   18.4   0.1    4.0  4  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.2   1.3e-10   1.2e-06       1      45 [.      15      58 ..      15      59 .. 0.96
   2 ?   -2.0   0.0       0.5   4.5e+03      22      30 ..      82      91 ..      70      92 .. 0.73
   3 !   25.0   0.3   1.8e-09   1.6e-05       2      41 ..     157     195 ..     156     198 .. 0.83
   4 ?    1.8   0.1      0.03   2.7e+02       3      30 ..     205     233 ..     204     237 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.3e-10
                     CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrny 45
                     r++W+e E+  L    + h  +W++I++ l+gR++ +c sr++++
       CCE30588.1 15 RKAWSEAEEYFLFHSRESHR-SWTEISKSLPGRSAVSCSSRYYDL 58
                     789***************99.*********************987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.5
                     C.HHHHHHHH CS
  Myb_DNA-binding 22 r.WkkIaerl 30
                     + W+ Ia r+
       CCE30588.1 82 DmWAPIAARM 91
                     25****9987 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 1.8e-09
                      SSSBHHHHHHH.HHHHHHHTTCHHHHHHHHTSS-HHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelL.leavkkhGnrWkkIaerlggRtekqcrsr 41 
                      ++W+e+E+ lL ++   k   +W++Ia+ l+gRt+ +c+s+
       CCE30588.1 157 SAWSEDEETLLfAQRRSK--ISWDEIAKFLPGRTAASCQSH 195
                      58**99999983444444..67*****************98 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.03
                      SSBHHHHHHHHHHHHHHTTC.HHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnr.WkkIaerl 30 
                      +W ee  ++L ++   + ++ W+kI e+l
       CCE30588.1 205 AWHEERTNKLCQLYVSLKSSmWAKIGEEL 233
                      688888999999999999555****9987 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   2.1e-07    0.0019       1      49 [.      18      64 ..      18      71 .. 0.88
   2 ?   -0.5   0.0      0.17   1.5e+03       7      28 ..      70      92 ..      66     103 .. 0.71
   3 !   11.3   0.1   3.5e-05      0.31       1      39 [.     159     196 ..     159     204 .. 0.75
   4 !    5.7   0.1     0.002        18       1      28 [.     206     234 ..     206     257 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.1e-07
  Myb_DNA-bind_6  1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLrpkisr 49
                    W+e+E++ L    e + + W++I++ l+ R++ +c  r+   Lr +++ 
      CCE30588.1 18 WSEAEEYFLFHSRESH-RSWTEISKSLPGRSAVSCSSRYYD-LRNRREG 64
                    99******99888888.9*********55**********99.9877665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.17
  Myb_DNA-bind_6  7 eiLlklvekygnd.WknIaealn 28
                     +L+ l+e+   d W +Ia  ++
      CCE30588.1 70 HKLAILYERGKADmWAPIAARMA 92
                    67888888876434999987665 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 3.5e-05
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrw 39 
                     W+e+E+ +L    +     W +Ia+ l+ Rt+ +c+ ++
      CCE30588.1 159 WSEDEETLLFAQRRSK-ISWDEIAKFLPGRTAASCQSHH 196
                     6666666665544433.59********55******9876 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.002
  Myb_DNA-bind_6   1 WteeEdeiLlklveky.gndWknIaealn 28 
                     W+ee + +L +l+    ++ W +I e+l+
      CCE30588.1 206 WHEERTNKLCQLYVSLkSSMWAKIGEELK 234
                     99999999977665552789*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2515.29
//
Query:       CCE30589.1  [L=335]
Description: related to DRPLA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-13   48.7   6.5    2.3e-08   34.1   0.3    3.9  4  Myb_DNA-binding  Myb-like DNA-binding domain
    3.9e-08   33.4   2.3    0.00022   21.4   0.1    4.0  4  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.3   2.6e-12   2.3e-08       1      46 []      15      61 ..      15      61 .. 0.97
   2 ?   -1.7   0.0      0.38   3.4e+03      20      30 ..      81      93 ..      71      94 .. 0.65
   3 !   13.9   0.0     5e-06     0.045      18      41 ..     169     190 ..     152     192 .. 0.76
   4 ?    1.4   0.1     0.042   3.7e+02       4      30 ..     201     228 ..     199     236 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 2.6e-12
                     CSSSBHHHHHHHHHHHHHHT.TCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgkWteeEdelLleavkkhG.nrWkkIaerlggRtekqcrsrwrnyl 46
                     r++W+eeE+  Ll   + +   +W++I++ ++gR+e  cr r+++++
       CCE30589.1 15 RQAWSEEEEYFLLHSRESYRiRSWTEISKSFPGRSEGGCRVRYYDLK 61
                     799****************************************9875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.38
                     TTC...HHHHHHHH CS
  Myb_DNA-binding 20 Gnr...WkkIaerl 30
                     G +   W+ Ia r+
       CCE30589.1 81 G-KadmWAPIAARM 93
                     4.2246****9987 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 5e-06
                      HHTTCHHHHHHHHTSS-HHHHHHH CS
  Myb_DNA-binding  18 khGnrWkkIaerlggRtekqcrsr 41 
                      k   +W++Ia+ l+gRt+  c+ +
       CCE30589.1 169 K--ISWDEIAKLLPGRTAAGCQTH 190
                      3..46*************999866 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.042
                      SBHHHHHHHHHHHHHHTTC.HHHHHHHH CS
  Myb_DNA-binding   4 WteeEdelLleavkkhGnr.WkkIaerl 30 
                      W +e  ++L ++ + + ++ W+kI e+l
       CCE30589.1 201 WPQERKNKLCKLYASLKSSmWAKIGEEL 228
                      66666788999999999555****9865 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   2.5e-08   0.00022       1      44 [.      18      61 ..      18      73 .. 0.90
   2 ?   -0.2   0.0      0.13   1.2e+03       6      28 ..      71      94 ..      67     109 .. 0.74
   3 !    6.2   0.0    0.0014        13      18      56 ..     169     205 ..     154     209 .. 0.69
   4 ?    3.4   0.2      0.01        93       3      36 ..     203     235 ..     201     245 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.5e-08
  Myb_DNA-bind_6  1 WteeEdeiLlklvekyg.ndWknIaealnrRtpkqcfdrwknkLr 44
                    W+eeE++ Ll   e y  + W++I++ ++ R+   c+ r+   L+
      CCE30589.1 18 WSEEEEYFLLHSRESYRiRSWTEISKSFPGRSEGGCRVRYYD-LK 61
                    ****************868*********55**********98.65 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.13
  Myb_DNA-bind_6  6 deiLlklvekygnd.WknIaealn 28
                    +++L+ l+e+   d W +Ia  ++
      CCE30589.1 71 KDKLAVLYERGKADmWAPIAARMA 94
                    688888888876444999987665 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0014
  Myb_DNA-bind_6  18 n.dWknIaealnrRtpkqcfdrwknkLrpkisrkkwskee 56 
                     +  W +Ia+ l+ Rt+  c+ ++     ++   ++w++e 
      CCE30589.1 169 KiSWDEIAKLLPGRTAAGCQTHHFV---QSATGPEWPQER 205
                     248********55******987655...556666666665 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.01
  Myb_DNA-bind_6   3 eeEdeiLlklveky.gndWknIaealnrRtpkqcf 36 
                     +e + +L kl+    ++ W +I e+l    p++c 
      CCE30589.1 203 QERKNKLCKLYASLkSSMWAKIGEELM--IPWECA 235
                     566677888888773569******996..678875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2522.01
//
Query:       CCE30590.1  [L=234]
Description: uncharacterized protein CPUR_04439 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1853.26
//
Query:       CCE30591.1  [L=172]
Description: related to DRPLA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-06   27.1   1.5      1e-05   25.6   0.0    2.4  3  Myb_DNA-binding  Myb-like DNA-binding domain
     0.0011   19.1   0.0      0.023   14.9   0.0    2.4  2  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.58   5.2e+03       3       8 ..       4       9 ..       2      11 .. 0.79
   2 !   25.6   0.0   1.1e-09     1e-05       3      41 ..      58      95 ..      56      99 .. 0.87
   3 ?   -0.6   0.1      0.18   1.6e+03      16      30 ..     118     133 ..     105     142 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.58
                    SSBHHH CS
  Myb_DNA-binding 3 kWteeE 8
                    +W+e E
       CCE30591.1 4 SWSEAE 9
                    899998 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 1.1e-09
                     SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHH CS
  Myb_DNA-binding  3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsr 41
                     +W+ +E+  L  +++  G  W+ Ia+ ++gRt+ +c s+
       CCE30591.1 58 EWSGDEEAFLFAYHRA-GLAWNDIAKLMPGRTAHACESY 95
                     7999999888888877.*******************998 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.18
                      HHHHTTC.HHHHHHHH CS
  Myb_DNA-binding  16 vkkhGnr.WkkIaerl 30 
                        ++ ++ W+ I ++l
       CCE30591.1 118 YVRLKSSmWANIGQML 133
                      4455533499998876 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.6e-06     0.023       1      57 [.      59     111 ..      59     114 .. 0.75
   2 ?    2.6   0.1     0.018   1.6e+02       6      28 ..     111     134 ..     106     146 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.6e-06
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLrpkisrkkwskeed 57 
                     W+ +E+  L  +++  g  W+ Ia+ ++ Rt+ +c  ++++   +    ++w++e +
      CCE30591.1  59 WSGDEEAFLFAYHR-AGLAWNDIAKLMPGRTAHACESYHRE---QTATGPAWPQERK 111
                     66666666666665.478*********55*******99999...5567777777665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.018
  Myb_DNA-bind_6   6 deiLlklveky.gndWknIaealn 28 
                     + +L kl+ +  ++ W nI ++l 
      CCE30591.1 111 KNELCKLYVRLkSSMWANIGQMLT 134
                     556666665553679****99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1288.14
//
Query:       CCE30592.1  [L=427]
Description: probable dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-25   88.1   0.0    2.6e-24   86.0   0.0    1.9  1  Pkinase      Protein kinase domain
  ------ inclusion threshold ------
       0.02   14.2   0.2       0.97    8.7   0.0    2.9  4  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.0   2.9e-28   2.6e-24       1     264 []      77     423 ..      77     423 .. 0.88

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 2.9e-28
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.....HHHHHHHHHHHHHSCTTB--EEEEEEE....SSEEEEEEE--TTEB.HHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.....kkvlrEikilkklkhpnivrlyevfee....kdelylvleyvegge.ladll 89 
                 y+ + klG G +++V  a++ + +++vA+K+  ++++  +++       +  E + +++   + +  l+++f       ++++lv   +      +++ 
  CCE30592.1  77 YQIVGKLGYGVTSTVWLARDLSGCRHVALKIYVTSNEIGEMQdveldAYMCIENSSINHPGRRAVRSLLDSFDIdgpdGRHRCLVHSPLWDSVyGFRHR 175
                 77899**************************99998888877677766777888888888888999999999877887888888877666443256666 PP

                 HHHSS--HHHHHHHHHHHHHHHHHHHHTT.EE-SS-SGGGEEEET......................................TTEEEE-SGTTSEESS CS
     Pkinase  90 erkgslseeeakkiakqilegleylHskg.iiHrDlKpeNiLide......................................kgelKitDFGlakele 149
                 +  ++l++  + +++++++++l+ lH+++   H D+   NiL+                                         g+  ++D+G a +l 
  CCE30592.1 176 NPIRKLPKPVMAFVLRRLFQALDLLHQEChTAHTDIQERNILFGAdksvlealekeelenpcprkeidgrtiylsrklgipkqVGDPVLCDLGSALRLG 274
                 68889*********************76659************9558********************99999999999998665669************ PP

                 SSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS............... CS
     Pkinase 150 ssskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei............... 233
                  + + ++ +    Y+APEv+ + + s  vD+W +G++++  + g+++f g++ + k+++   +l +i+ +lg+   +l  + ++               
  CCE30592.1 275 DGITRREDIQPDVYRAPEVILGIPWSYRVDIWNVGCMIWDAFEGEHLFTGHDPEFKTYRGRAHLAEIIALLGPPPPSLLPRANLgskffsdagefcagi 373
                 ***999999****************************************9999999999999999999999954444444444467788888******* PP

                 ...................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 ...................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                     e ++++++k+l++dp+kR +a+el +++++
  CCE30592.1 374 sipeskpleqretvlegedRECFLRFMRKMLQWDPEKRSSAKELAEDEWV 423
                 ******************88899***********************9996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.25   2.3e+03       6      46 ..      82     118 ..      78     134 .. 0.72
   2 ?    1.8   0.0     0.013   1.2e+02     114     141 ..     195     223 ..     170     226 .. 0.79
   3 ?    8.7   0.0   0.00011      0.97     161     207 ..     278     323 ..     240     335 .. 0.83
   4 ?   -1.9   0.1      0.18   1.6e+03     236     257 ..     398     419 ..     389     420 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.25
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHH CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateeeke 46 
                  klG G  ++V+ ++      + + +Va+K+   +++  e++
   CCE30592.1  82 KLGYGVTSTVWLARDL----SGCRHVALKIYVTSNEIGEMQ 118
                  7888888888888777....889999999986655555544 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.013
                  HHHHHHHHT.TEEEST-SGGGEEEEETTE CS
  Pkinase_Tyr 114 kGmeyLesk.klvHrdlaarNvLlsenkv 141
                  ++++ L+++ +  H d+  rN+L   +k 
   CCE30592.1 195 QALDLLHQEcHTAHTDIQERNILFGADKS 223
                  5666676542789**********988775 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00011
                  ETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTT CS
  Pkinase_Tyr 161 kkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespyp 207
                  +++e   p  + apE++     + + D+W  G ++w  f+ ge+ ++
   CCE30592.1 278 TRREDIQPDVYRAPEVILGIPWSYRVDIWNVGCMIWDAFE-GEHLFT 323
                  556667788899*************************998.776655 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.18
                  HHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 236 elmkkcweedpeeRptfselve 257
                  ++m+k ++ dpe+R + +el e
   CCE30592.1 398 RFMRKMLQWDPEKRSSAKELAE 419
                  7899************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3120.93
//
Query:       CCE30593.1  [L=166]
Description: uncharacterized protein CPUR_04442 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1247.12
//
Query:       CCE30594.1  [L=308]
Description: related to DRPLA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-08   33.7   5.5    0.00075   19.6   0.1    3.7  4  Myb_DNA-binding  Myb-like DNA-binding domain
    1.2e-05   25.5   0.1       0.55   10.5   0.0    3.8  3  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
       0.54    9.4   3.9       0.35   10.0   2.1    1.5  2  Med3             Mediator complex subunit 3 fungal


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   1.3e-07   0.00075      20      46 .]       3      27 ..       1      27 [. 0.93
   2 ?   -4.1   0.0         3   1.8e+04      23      29 ..      50      56 ..      41      57 .. 0.71
   3 !   13.8   0.0   8.2e-06     0.049       6      42 ..     132     166 ..     128     169 .. 0.80
   4 ?    0.5   0.3      0.12   7.2e+02       9      30 ..     181     203 ..     174     209 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.3e-07
                     TTCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding 20 GnrWkkIaerlggRtekqcrsrwrnyl 46
                     G  Wk I   l+gRt k+c+ r++nyl
       CCE30594.1  3 GTAWKDI--SLPGRTTKSCKMRYNNYL 27
                     677****..*****************7 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3
                     HHHHHHH CS
  Myb_DNA-binding 23 WkkIaer 29
                     W+ +a +
       CCE30594.1 50 WAQVAGK 56
                     9999865 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 8.2e-06
                      HHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHH CS
  Myb_DNA-binding   6 eeEdelLleavkkhGnrWkkIaerlggRtekqcrsrw 42 
                      eeE+ l+++    +G  Wk+I++ l+gRt   c+ ++
       CCE30594.1 132 EEEEFLFANKRSGMG--WKEISDGLPGRTFAGCQAHY 166
                      455555588888899..************99999998 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.12
                      HHHHHHHHHHHT.TCHHHHHHHH CS
  Myb_DNA-binding   9 delLleavkkhG.nrWkkIaerl 30 
                       + L ++ + +  + W+kI e l
       CCE30594.1 181 KNELCKVYESLKrSMWSKIGEQL 203
                      56677778888844499998876 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   9.3e-05      0.55      19      47 ..       5      31 ..       1      40 [. 0.82
   2 !    6.4   0.0    0.0018        11       1      55 [.     129     179 ..     129     184 .. 0.68
   3 !    4.6   0.2    0.0064        38       7      30 ..     182     206 ..     176     212 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.3e-05
  Myb_DNA-bind_6 19 dWknIaeal.nrRtpkqcfdrwknkLrpki 47
                     Wk I+  l + Rt k+c++r++n Lr+++
      CCE30594.1  5 AWKDIS--LpG-RTTKSCKMRYNNYLRSQL 31
                    577776..635.**************9986 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0018
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLrpkisrkkwske 55 
                     W+ eE+e L    ++ g  Wk+I++ l+ Rt   c+ ++ ++++     ++w++e
      CCE30594.1 129 WSGEEEEFLFAN-KRSGMGWKEISDGLPGRTFAGCQAHYAEQIKT---GPAWPQE 179
                     666666666543.334568********55*********9995533...3336655 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0064
  Myb_DNA-bind_6   7 eiLlklvekygn.dWknIaealnrR 30 
                      +L k++e   +  W++I e+l+ R
      CCE30594.1 182 NELCKVYESLKRsMWSKIGEQLKVR 206
                     56666666665458*******9944 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.93   5.6e+03      44      69 ..      21      46 ..      19      51 .. 0.78
   2 ?   10.0   2.1   5.9e-05      0.35     207     229 ..      99     117 ..      89     143 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.93
        Med3 44 LqfnefiqimaslDeertkekskqek 69
                +++n+++++  +lDee+ ++  + +k
  CCE30594.1 21 MRYNNYLRSQLELDEEGLNDLARLDK 46
                67899999999999999888777655 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 5.9e-05
        Med3 207 kaaakaaakaqaqaqaqaqaqqq 229
                      a+a+aq q+q q q+q+q
  CCE30594.1  99 D----AEAQAQIQQQDQQQQQDQ 117
                 3....444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2184.29
//
Query:       CCE30595.1  [L=241]
Description: related to DRPLA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-08   34.5  10.1    2.8e-07   30.6   0.1    3.1  4  Myb_DNA-binding  Myb-like DNA-binding domain
    2.5e-05   24.5   0.7    0.00077   19.7   0.1    3.2  3  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.041   13.6   0.1      0.096   12.4   0.1    1.6  1  Sigma70_r4_2     Sigma-70, region 4


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.54   3.2e+03       3       8 ..       4       9 ..       2      12 .. 0.81
   2 !   30.6   0.1   4.7e-11   2.8e-07       8      46 .]      77     114 ..      71     114 .. 0.86
   3 !    9.2   0.8   0.00023       1.4       4      36 ..     120     155 ..     118     160 .. 0.83
   4 ?   -3.0   0.1       1.5   8.8e+03       7      17 ..     184     194 ..     183     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.54
                    SSBHHH CS
  Myb_DNA-binding 3 kWteeE 8
                    +Wte E
       CCE30595.1 4 PWTEAE 9
                    8***99 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 4.7e-11
                      HHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding   8 EdelLleavkkhGnrWkkIaerlggRtekqcrsrwrnyl 46 
                      E e Ll a+k+ G++W++Iae+l+ Rt  +c+ +++++l
       CCE30595.1  77 E-ETLLFACKRAGKSWEEIAEYLPERTITSCKGYYYRLL 114
                      4.5566689999***********************9986 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00023
                      SBHHHHHHHHHHHHHHT.TCHHHHHHHHT..SS-HH CS
  Myb_DNA-binding   4 WteeEdelLleavkkhG.nrWkkIaerlg..gRtek 36 
                      W++e +++L +  ++   + W+kI ++l   +R+++
       CCE30595.1 120 WSPELQNKLCRIYERSKpEMWAKIGQELLivWRSAE 155
                      ***************88777****887654677765 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 1.5
                      HHHHHHHHHHH CS
  Myb_DNA-binding   7 eEdelLleavk 17 
                      +E++++ ++++
       CCE30595.1 184 QEHDRIQQLHR 194
                      79999999886 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.3e-07   0.00077       7      45 ..      78     115 ..      73     128 .. 0.80
   2 ?    1.7   0.1     0.054   3.2e+02       1      27 [.     120     147 ..     120     160 .. 0.77
   3 ?   -0.9   0.0      0.33     2e+03       4      27 ..     184     207 ..     183     218 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.3e-07
  Myb_DNA-bind_6   7 eiLlklvekygndWknIaealnrRtpkqcfdrwknkLrp 45 
                     e+Ll  +++ g+ W++Iae l+ Rt ++c+ ++ + L  
      CCE30595.1  78 ETLLFACKRAGKSWEEIAEYLPERTITSCKGYYYRLL-R 115
                     678889***************99************44.3 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.054
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygn.dWknIaeal 27 
                     W++e + +L +++e+     W +I ++l
      CCE30595.1 120 WSPELQNKLCRIYERSKPeMWAKIGQEL 147
                     88888888888898887537****9986 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.33
  Myb_DNA-bind_6   4 eEdeiLlklvekygndWknIaeal 27 
                     +E +++++l+++ +   ++  + l
      CCE30595.1 184 QEHDRIQQLHRHTTHSLSQAGTSL 207
                     799999999999877776666665 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.6e-05     0.096      25      54 .]      87     117 ..      76     117 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.6e-05
                   S---HHHHHHHH.T--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  25 eglsykEIAell.gisegtVksrlsRArkkL 54 
                    g+s +EIAe+l + + +++k +++R ++++
    CCE30595.1  87 AGKSWEEIAEYLpERTITSCKGYYYRLLRRC 117
                   699***********************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1621  (0.0904122); expected 358.6 (0.02)
Passed bias filter:                      679  (0.0378716); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1769.83
//
Query:       CCE30596.1  [L=266]
Description: related to DRPLA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-11   43.7   4.0     0.0072   16.6   0.0    4.4  4  Myb_DNA-bind_6   Myb-like DNA-binding domain
    3.3e-11   43.2   7.4    8.5e-05   22.7   0.0    4.1  4  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-06     0.011       1      43 [.      18      58 ..      18      70 .. 0.80
   2 !    4.6   0.1    0.0044        39       6      28 ..      70      93 ..      66     106 .. 0.79
   3 !   16.6   0.0     8e-07    0.0072       1      58 [.     163     216 ..     163     218 .. 0.75
   4 !    6.7   0.2   0.00098       8.7       2      35 ..     211     243 ..     210     250 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-06
  Myb_DNA-bind_6  1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkL 43
                    W   Ede+L++l +  g  W +I++ l+ Rt  +c+dr+++ +
      CCE30596.1 18 WKLVEDELLVQLKK-SGMSWLEISNSLPGRTFRSCRDRHRS-I 58
                    55568999999865.579*********55***********9.4 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0044
  Myb_DNA-bind_6  6 deiLlklvekygnd.WknIaealn 28
                    + +L++ +e++  d W +Ia +++
      CCE30596.1 70 KNKLARSYERCKADmWAQIAAEMA 93
                    679999999998645*****9997 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 8e-07
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLrpkisrkkwskeedi 58 
                     W+ eE+  L    ++    Wk+I+  l+ Rt ++c+++++ +++   s ++w++e + 
      CCE30596.1 163 WSGEEETVLFACTRDK-MSWKSISALLPGRTTSSCQEHYQIQCK---SGPAWPQERKN 216
                     7777777777666665.68********55**********99664...46667777665 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.00098
  Myb_DNA-bind_6   2 teeEdeiLlklveky.gndWknIaealnrRtpkqc 35 
                      +e + +L kl+e   ++ W nI ++ln   p+ +
      CCE30596.1 211 PQERKNKLCKLYESLkSSMWANIGDELN--VPWKV 243
                     5566778888888873458********9..66665 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1     3e-08   0.00027       3      43 ..      17      56 ..      15      59 .. 0.90
   2 ?   -0.3   0.1      0.14   1.2e+03      16      30 ..      77      92 ..      67     101 .. 0.67
   3 !   22.7   0.0   9.4e-09   8.5e-05       6      43 ..     166     201 ..     160     202 .. 0.79
   4 ?    0.4   0.1     0.088   7.9e+02       4      31 ..     210     238 ..     208     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3e-08
                     SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHH CS
  Myb_DNA-binding  3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwr 43
                     +W   EdelL+++ k  G +W +I++ l+gRt  +cr+r r
       CCE30596.1 17 QWKLVEDELLVQLKKS-GMSWLEISNSLPGRTFRSCRDRHR 56
                     7999********9766.*********************976 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.14
                     HHHHT.TCHHHHHHHH CS
  Myb_DNA-binding 16 vkkhG.nrWkkIaerl 30
                      ++   + W+ Ia ++
       CCE30596.1 77 YERCKaDMWAQIAAEM 92
                     4455534499998766 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 9.4e-09
                      HHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHH CS
  Myb_DNA-binding   6 eeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwr 43 
                      eeE  l+++   k   +Wk+I+  l+gRt  +c+++++
       CCE30596.1 166 EEETVLFACTRDK--MSWKSISALLPGRTTSSCQEHYQ 201
                      4555555666666..56********************8 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.088
                      SBHHHHHHHHHHHHHHTTC.HHHHHHHHT CS
  Myb_DNA-binding   4 WteeEdelLleavkkhGnr.WkkIaerlg 31 
                      W +e  ++L ++ + + ++ W+ I ++l+
       CCE30596.1 210 WPQERKNKLCKLYESLKSSmWANIGDELN 238
                      66666788999999999555***998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1991.99
//
Query:       CCE30597.1  [L=96]
Description: uncharacterized protein CPUR_04446 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-11   43.6   0.0    2.2e-11   43.5   0.0    1.0  1  PIF1      PIF1-like helicase
    2.6e-05   24.0   0.0    3.1e-05   23.8   0.0    1.1  1  AAA_30    AAA domain
     0.0016   18.8   0.0      0.002   18.5   0.0    1.1  1  AAA_19    AAA domain


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   3.7e-15   2.2e-11     102     160 ..      24      80 ..       4      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 3.7e-15
                 C-SEEEEECGGGSBHHHHHHHHHHHHHHCT-...-SCCCC-EEEEE--TTS-----SSS CS
        PIF1 102 ktsliiwDEapmverecfealdrtlrdilkekeidkpFGGktvvlgGDfrQilPviekg 160
                 +   ii+DE +m+  + + ++d+ l+++  +   d+pFGG+ v l GDf Q++Pv +k+
  CCE30597.1  24 EQWYIILDEKSMIGLRTLYNVDQRLCQVNAK--PDTPFGGMSVLLSGDFVQLPPVFDKP 80 
                 34579***********************998..57********************9886 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   5.2e-09   3.1e-05      68     138 ..       3      83 ..       1      94 [. 0.79

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 5.2e-09
      AAA_30  68 ieastiakllkrlkgrarlepg.tllivDEagmvdtkqlaallkaaeka.........gakvilvGDerQlasVeaGgvlr 138
                 i+ +ti  +l +l+++++ e++   +i DE +m++ ++l ++ +++ +          g++v+l GD  Ql++V    +++
  CCE30597.1   3 ITLMTITDVLMSLREATTAENEqWYIILDEKSMIGLRTLYNVDQRLCQVnakpdtpfgGMSVLLSGDFVQLPPVFDKPLYK 83 
                 6678999999999976677777467888**********999888877755678999988**************97665555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.3e-07     0.002      89     145 ..      13      77 ..       2      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.3e-07
      AAA_19  89 elleeaeeekklqeeellivDEfqdvd.elqyrLlkallgekkk.........lllvGDpdQliyvf 145
                   l+  e ++  +e++++i DE +++   + y++ ++l++ ++k         +ll GD  Ql++vf
  CCE30597.1  13 MSLR--EATTAENEQWYIILDEKSMIGlRTLYNVDQRLCQVNAKpdtpfggmsVLLSGDFVQLPPVF 77 
                 3333..3444555899***********************88777899******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 691.73
//
Query:       CCE30598.1  [L=134]
Description: uncharacterized protein CPUR_04447 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00014   20.0   0.0    0.00017   19.7   0.0    1.0  1  Herpes_Helicase  Helicase
    0.00015   21.5   0.4    0.00036   20.3   0.4    1.6  1  UvrD_C_2         UvrD-like helicase C-terminal domain


Domain annotation for each model (and alignments):
>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.9e-08   0.00017     721     776 ..      39      93 ..      29     101 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.9e-08
  Herpes_Helicase 721 cttvDYgissklamtiaksqGlslekvAicFgnhknlklssvYvalsRatdseflv 776
                      ct + Y ++   a+t+ ksqG+ l++   + +  +       Yva+sR+     ++
       CCE30598.1  39 CTHTRYPLTVAYAITVHKSQGTTLDRAVADVS-ARDFTSGLSYVAVSRVKTLGGIM 93 
                      9999**********************666665.569************98766555 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.4   4.1e-08   0.00036       2      44 ..      49      85 ..      48      89 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.1e-08
    UvrD_C_2  2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTR 44
                aya+t+hk+QG   +  +    d +a++ ++    l Y+av+R
  CCE30598.1 49 AYAITVHKSQGTTLDRAVA---DVSARD-FT--SGLSYVAVSR 85
                8*****************9...555554.43..889******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 996.34
//
Query:       CCE30599.1  [L=192]
Description: uncharacterized protein CPUR_04448 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.041   14.3   0.1      0.063   13.7   0.1    1.3  1  EAF         RNA polymerase II transcription elongation factor
       0.14   12.3   7.1      0.097   12.8   5.1    1.8  2  SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
       0.66    8.0   3.6       0.86    7.6   3.6    1.1  1  DUF2967     Protein of unknown function (DUF2967)


Domain annotation for each model (and alignments):
>> EAF  RNA polymerase II transcription elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.1e-05     0.063      14      67 ..       4      58 ..       1      76 [. 0.67

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
         EAF 14 kssksefvairYnfkPasvdqsk.egtlkqsssenkevsvelsfsdtFeGseqpa 67
                + s+++f +ir++  P +vd+ + +++ +++++++++ + ++  +++++G+e+++
  CCE30599.1  4 RGSDDSFSTIRFDLSPPQVDDARlQARRQHQDQQQQQQQQQQRANSEWSGHEETS 58
                56899***************98854444443333333233333333588877665 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   5.1   1.6e-05     0.097      30      48 ..      34      52 ..       2      62 .. 0.62
   2 ?   -2.4   0.0       0.9   5.4e+03      34      34 ..     137     137 ..     104     155 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
  SUIM_assoc 30 qeqqqqqqqqqqdppgqls 48
                q qqqqqqqqqq    + s
  CCE30599.1 34 QDQQQQQQQQQQRANSEWS 52
                3444444444444444444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.9
  SUIM_assoc  34 q 34 
                  
  CCE30599.1 137 H 137
                 1 PP

>> DUF2967  Protein of unknown function (DUF2967)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.6   0.00014      0.86     568     599 ..      16      47 ..       4      61 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00014
     DUF2967 568 ssapptmkdgnffgssqkqkqrqsqrqqpqql 599
                 + +pp + d+++ +  q+q q+q+q+qq+q+ 
  CCE30599.1  16 DLSPPQVDDARLQARRQHQDQQQQQQQQQQRA 47 
                 5689********99999999988887777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1834  (0.102292); expected 358.6 (0.02)
Passed bias filter:                      793  (0.04423); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 1576.25
//
Query:       CCE30600.1  [L=102]
Description: uncharacterized protein CPUR_04449 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 884.45
//
Query:       CCE30601.1  [L=167]
Description: related to DRPLA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00014   22.0   0.9    0.00057   20.0   0.1    2.2  2  Myb_DNA-binding  Myb-like DNA-binding domain
     0.0022   18.2   1.3        0.3   11.4   0.1    2.3  2  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   6.4e-08   0.00057      22      43 ..       2      23 ..       1      25 [. 0.94
   2 ?   -0.4   0.1      0.15   1.4e+03      17      31 ..      45      60 ..      31      63 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.4e-08
                     CHHHHHHHHTSS-HHHHHHHHH CS
  Myb_DNA-binding 22 rWkkIaerlggRtekqcrsrwr 43
                     +Wk+I+  l+gRt  +cr++++
       CCE30601.1  2 SWKSISALLPGRTIISCRDHYK 23
                     7********************7 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.15
                     HHHTTC.HHHHHHHHT CS
  Myb_DNA-binding 17 kkhGnr.WkkIaerlg 31
                     + + ++ W+ I e+l+
       CCE30601.1 45 ESLKSSmWANIGEELN 60
                     4444336**9999886 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   3.3e-05       0.3      20      44 ..       3      27 ..       2      40 .. 0.80
   2 !    5.5   0.5    0.0023        21      12      28 ..      40      60 ..      32      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.3e-05
  Myb_DNA-bind_6 20 WknIaealnrRtpkqcfdrwknkLr 44
                    Wk+I+  l+ Rt  +c+d++k++++
      CCE30601.1  3 WKSISALLPGRTIISCRDHYKRQCK 27
                    ********55************553 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0023
  Myb_DNA-bind_6 12 lvekygn....dWknIaealn 28
                     +++y++     W nI e+ln
      CCE30601.1 40 FCKQYESlkssMWANIGEELN 60
                    688997666668********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1444.07
//
Query:       CCE30602.1  [L=302]
Description: related to DRPLA protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-07   31.2   7.4      0.016   15.4   0.0    4.4  4  Myb_DNA-bind_6   Myb-like DNA-binding domain
    7.1e-06   26.1  10.7    0.00075   19.6   0.0    3.7  3  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   2.2   4.8e-06     0.043       1      28 [.      20      67 ..      20      87 .. 0.78
   2 !   15.4   0.0   1.8e-06     0.016       1      57 [.     128     180 ..     107     183 .. 0.86
   3 ?    0.2   0.2     0.099   8.9e+02       8      28 ..     182     203 ..     175     213 .. 0.65
   4 ?   -2.2   0.0      0.59   5.3e+03       3      13 ..     254     264 ..     253     268 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.8e-06
  Myb_DNA-bind_6  1 WteeEdeiLlklvek................ygn...d.WknIaealn 28
                    Wt+eEde+L++l +                 y++   d W++Ia +++
      CCE30602.1 20 WTAEEDELLVQLKKSknrleseesknklsrlYERgksDiWTQIAAEMA 67
                    **************9888888888777777754465645*****9998 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.8e-06
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLrpkisrkkwskeed 57 
                     W+ +E+ iL  + ++  + Wk+I+++l+ Rt   c+ ++ +   +++  ++w++e +
      CCE30602.1 128 WSGDEETILFAY-RDAKKSWKTISDHLPGRTVGGCRCHYTT---QNLTGPAWPQERK 180
                     777788887765.55669*********55**********99...8899999999876 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.099
  Myb_DNA-bind_6   8 iLlklvekygn....dWknIaealn 28 
                     +   l++ y++     W++I e l 
      CCE30602.1 182 E---LCKSYESlkqsIWSKIGERLT 203
                     4...455554433346999998775 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.59
  Myb_DNA-bind_6   3 eeEdeiLlklv 13 
                     ++Ed+ L +++
      CCE30602.1 254 DQEDDQLSRHY 264
                     68999999888 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   4.6   0.00054       4.9       3      29 ..      19      65 ..      18      70 .. 0.71
   2 !   19.6   0.0   8.4e-08   0.00075       3      43 ..     127     166 ..     125     168 .. 0.83
   3 ?   -0.9   0.0      0.22     2e+03      22      30 ..     193     202 ..     178     207 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00054
                     SSBHHHHHHHHHHHHH..................HTTC...HHHHHHH CS
  Myb_DNA-binding  3 kWteeEdelLleavkk..................hGnr...WkkIaer 29
                     +Wt+eEdelL+++ k                    G +   W+ Ia +
       CCE30602.1 19 SWTAEEDELLVQLKKSknrleseesknklsrlyeRG-KsdiWTQIAAE 65
                     6**********9977777777766666666663333.24677777665 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 8.4e-08
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwr 43 
                      +W+ +E+ +L  +     ++Wk+I+++l+gRt   cr ++ 
       CCE30602.1 127 EWSGDEETILFAYRDA-KKSWKTISDHLPGRTVGGCRCHYT 166
                      6888888887766655.789*****************9985 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.22
                      C.HHHHHHHH CS
  Myb_DNA-binding  22 r.WkkIaerl 30 
                      + W+kI erl
       CCE30602.1 193 SiWSKIGERL 202
                      2599*99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2164.96
//
Query:       CCE30603.1  [L=1017]
Description: related to VPS9 (involved in vacuole trafficking) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-30  103.3   0.1    1.3e-29  102.5   0.1    1.5  1  VPS9      Vacuolar sorting protein 9 (VPS9) domain
      2e-15   56.8   0.2    4.1e-15   55.8   0.2    1.6  1  DUF5601   Domain of unknown function (DUF5601)
    1.7e-08   34.0   0.1    7.1e-08   32.0   0.0    2.0  2  CUE       CUE domain


Domain annotation for each model (and alignments):
>> VPS9  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.1   2.2e-33   1.3e-29       2     103 ..     680     779 ..     679     780 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 2.2e-33
        VPS9   2 eqaseeLkklseaksPreKlkcllrtieeiteavskseegeslgaDdlLPiliyviikssppnlysnvqfikrFrsktllegeegYylttleaavefie 100
                 + a++eL k+++++ Pr+K+ c+l++++ i+ ++  ++++++++aD ++P+liyv+++++p++l+snvq+i rFr++++l ge+gYyl++l  a++fie
  CCE30603.1 680 KLAQQELLKIKSYRAPRDKIICVLNCSKVIFGLL--KHNKADSSADSFMPLLIYVVLQCNPEHLVSNVQYILRFRDQEKLGGEAGYYLSSLMGAIQFIE 776
                 5699******************************..*************************************************************** PP

        VPS9 101 sle 103
                 +++
  CCE30603.1 777 NMD 779
                 *97 PP

>> DUF5601  Domain of unknown function (DUF5601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.2   6.9e-19   4.1e-15       1      65 []     537     601 ..     537     601 .. 0.99

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 6.9e-19
     DUF5601   1 KqiksfvrkisqrsisieelSemVqdFyqnlaerlnktplyktvsseavedlldeiEkyimtrlY 65 
                 +++ksf++++ ++++ + e++++++dF+ ++a+++   +++++vs+ + +++ +++Ek++m+rlY
  CCE30603.1 537 RYLKSFLSEFGKKQWMVHEQVKIISDFLAFIANKMMMCEVWGNVSDAEFDNAREGMEKLVMNRLY 601
                 789*************************************************************9 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.31   1.8e+03      29      40 ..     792     803 ..     789     803 .. 0.84
   2 !   32.0   0.0   1.2e-11   7.1e-08       3      42 .]     977    1016 ..     975    1016 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.31
                 TTHHHHHHHHHH CS
         CUE  29 gnvEatinaLLe 40 
                  nvEa+++ + e
  CCE30603.1 792 ANVEAAVSVIAE 803
                 69*****99865 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 1.2e-11
                  HHHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHHCC CS
         CUE    3 qmletLkemFPdldeevIravLrasngnvEatinaLLegs 42  
                  + +etL+ mFPdld+++I++v  +++g+v ++++a+L +s
  CCE30603.1  977 NVVETLSGMFPDLDKDIISDVVYQKQGRVGLAVDACLALS 1016
                  689**********************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1017 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       993  (0.0553851); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.49
# Mc/sec: 6254.14
//
Query:       CCE30604.1  [L=351]
Description: related to cytosolic Cu/Zn superoxide dismutase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-13   50.9   0.0      3e-13   50.1   0.0    1.4  1  Sod_Cu    Copper/zinc superoxide dismutase (SODC)


Domain annotation for each model (and alignments):
>> Sod_Cu  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   1.7e-17     3e-13       3     125 ..      48     175 ..      46     203 .. 0.71

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 1.7e-17
                 TS.EEEEEEEEEEEECSTTSTCEEEEEEEECSS-.STEEEEEEEESSTTTTTTTGGG-SB-STT-.CSSTTTTTCS-TTEEEEEEE.STTSE.EEEEEE CS
      Sod_Cu   3 kg.kgevsGtvtftqeeskesgsvevtvevkglp.pggkhgfHiHengdcsagfksagghfnptgkkhgapndeerhaGDLgniev.dadgt.akleit 97 
                 +g +g+v+G ++ +  +  +  +v++tv++++lp +gg + +HiH n     ++++ag+h++pt++ ++ p      aG L++ +v d  g+ ++++  
  CCE30604.1  48 PGlSGNVKGFISASAPP--DGVGVRFTVRFQNLPkTGGPFPYHIHLNKAAGGNCTAAGPHLDPTDRGDKPPC----DAGNLPSCQVgDLAGKyGRIDSD 140
                 57789*********866..4568***********87889***********999**********998887654....45555555553222333444433 PP

                 ..E....ESC.BCSTTT.BCT.TEEEEEESS---TT CS
      Sod_Cu  98 ..t....dklvslkgen.sil.gralvihagaDdlg 125
                   t    dk++slk+++  ++  r++vih  a++ +
  CCE30604.1 141 pfTaeyvDKYLSLKEDDpAFFgSRSFVIH-LANNTR 175
                 3313345*******988754449******.555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2369.97
//
Query:       CCE30605.1  [L=711]
Description: uncharacterized protein CPUR_04454 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.1   12.2  13.6       0.21   11.2  13.6    1.4  1  Spt20       Spt20 family
       0.27    9.9   5.0      0.066   11.9   1.7    1.5  2  MAP65_ASE1  Microtubule associated protein (MAP65/ASE1 family


Domain annotation for each model (and alignments):
>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  13.6   2.3e-05      0.21     106     168 ..     545     610 ..     528     620 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.3e-05
       Spt20 106 dqkqsq...qnqqqqqqqqqqqqqqqqqqeqqqqqnekdsttteekekksksknnssksktttkkp 168
                 + kq+q    +qqq  q++ qq qqqq q qqqq+++   t + +++  s++  +++ + t t+  
  CCE30605.1 545 QRKQQQlrlRQQQQELQAKYQQLQQQQHQRQQQQADSASVTGSPSQKGDSPAAGGAKAQSTATSSG 610
                 344555766666666666666666666666667777777777777777777777666666666655 PP

>> MAP65_ASE1  Microtubule associated protein (MAP65/ASE1 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.22   1.9e+03     451     476 ..      27      52 ..       6      79 .. 0.66
   2 ?   11.9   1.7   7.3e-06     0.066     408     461 ..     553     613 ..     548     675 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.22
                 XXXXXXXXXXXXXXXXX..XXXXXXX CS
  MAP65_ASE1 451 skrrvtapkTPsklksmskvssssss 476
                  ++++ +p+TP++ +s++++ ss+ +
  CCE30605.1  27 GASTSSIPSTPKVPRSDKNHASSDPN 52 
                 34455556777777777666655433 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 7.3e-06
                 HHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHCXXXXXXXXXXXXXX....X...XXX CS
  MAP65_ASE1 408 ieeqweeleekyqererqksarklkkasqteeeilkgskmrtpskrrvta....p...kTP 461
                 + +q++el++kyq+ ++q+ +r++++a +++ + + ++k  +p++ +++a    +   kTP
  CCE30605.1 553 LRQQQQELQAKYQQLQQQQHQRQQQQADSASVTGSPSQKGDSPAAGGAKAqstaTssgKTP 613
                 789**********999******999999999999999999999999998854431334555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2181  (0.121646); expected 358.6 (0.02)
Passed bias filter:                      952  (0.0530983); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.48
# Mc/sec: 4458.11
//
Query:       CCE30606.1  [L=923]
Description: related to purine utilization positive regulator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.9e-17   60.8   0.0    2.2e-16   59.7   0.0    1.6  1  Fungal_trans  Fungal specific transcription factor domain
    4.2e-06   26.8  13.4    6.7e-06   26.1  13.4    1.3  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.072   12.9   0.0       0.36   10.7   0.0    2.0  2  Gag_p24       gag gene protein p24 (core nucleocapsid protein


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   3.7e-20   2.2e-16       9     266 ..     231     464 ..     223     465 .. 0.83

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 3.7e-20
  Fungal_trans   9 hpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlllelyek 105
                   +  +p+lh+ +f ++ +   +++++ ++++++ +++a+  +  + +++               ++l+a+ ++  ++++ +++l +lq+L l+ +y++
    CCE30606.1 231 QIFWPVLHEKDFQNDLEEVYNGDKDPYKNFVARMVVAISLQKFDLQYAGL-----A-----DSYYLAAMQYS--EAVTRPKDLKTLQCLILVGYYSL 315
                   45569999999999998888889999999998888888777776666665.....2.....23567888888..99999****************** PP

  Fungal_trans 106 tssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpp.l.lddsqinlpLPcddddlwesddase 200
                    + +r+ +++++g+a r++++ gL ++++  +   + + ++ ++ +rrRl w + ++D  ++  lGrp+ +   ++q+++p++ d d  +e  +  +
    CCE30606.1 316 LTPTRTPVYYVIGLATRICQQEGLTDEKNVAS---GHNTDAQTIDMRRRLVWIVAMMDFGLSNLLGRPNgIaTGADQLDVPFFADVD--DECITPMG 407
                   ****************************9999...5699999999************************95599************9..44555555 PP

  Fungal_trans 201 etlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnWr 266
                   +t         + ++  a  +++  +++ +i ++l+  +    ++d++    +w+ ++e +l +W+
    CCE30606.1 408 ITAGP-----TSERKAVAIHIFKSRELQEGIRRTLYEQKRLEPNTDSS----PWFATMEQKLRAWK 464
                   55554.....34677788888888888888999888888888888888....99999999999997 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1  13.4   1.1e-09   6.7e-06       1      38 [.      51      88 ..      51      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.1e-09
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysessk 38
                +aC +Cr++K++Cd   P C  C+++++ C++ +  + 
  CCE30606.1 51 TACCRCRQRKTRCDPTLPRCIPCERSGSICEYLDTAKG 88
                69*****************************8777665 PP

>> Gag_p24  gag gene protein p24 (core nucleocapsid protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.9e-05      0.36     100     146 ..     223     268 ..     180     276 .. 0.84
   2 ?   -1.0   0.0      0.23   1.4e+03      45     125 ..     537     615 ..     510     616 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.9e-05
                 HHHHHHHHHHHHHHHHHHH--S.-CCC----TT--HHHHHHHHHHHH CS
     Gag_p24 100 leqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekal 146
                 +e  ++  ++ +  + ++  +  +l ++  G k+py++fvaR+  a+
  CCE30606.1 223 VELFKQKSQIFWPVLHEKDFQN-DLEEVYNGDKDPYKNFVARMVVAI 268
                 5556666777788888888887.9******************98776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.23
                 -S-HHHHHHHHHHHHHH.HHHHH----S----HHH.HHTSSS-HHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH--S.-CC CS
     Gag_p24  45 gssqlaaqlwkeeleee.ekdrvnraagpikissdmllgtgqllaeqsqlmqnvevleqvrrlillalekiprsgsktesla 125
                  ss+l+  lw + + e  e + + +++  +++    l      ++   +  +  ++++ +++++l+ +e  p+s ++t sla
  CCE30606.1 537 LSSSLNVLLWSTSYAEVrEAHPRPEVEELVNTA---LSCLDRCVERWPGTGYTSQLYAAMSKACLQSYESKPDSQKPTFSLA 615
                 455777788888887772222222222222222...2222333333334444456888888888888888888888886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (923 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 6172.24
//
Query:       CCE30607.1  [L=652]
Description: related to GAL4-like transcriptional activator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-16   57.8   0.5    1.2e-15   57.3   0.5    1.2  1  Fungal_trans  Fungal specific transcription factor domain
    1.3e-06   28.4  10.8    2.7e-06   27.4  10.8    1.5  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
       0.05   13.6   0.2       0.12   12.3   0.2    1.6  1  Sugarporin_N  Maltoporin periplasmic N-terminal extension


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.5     2e-19   1.2e-15       3     233 ..     185     397 ..     183     432 .. 0.77

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 2e-19
  Fungal_trans   3 rffsnfhpqfpilhkpsflpkt...ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqs 96 
                    f  n++p+fp + +  +l+     + +  +  + ++  +l+++la+G++ ++ +   ++++      + + f  ra+++  + +  p + ++ +qs
    CCE30607.1 185 YFMANIYPLFPCFSETALLTVLddvYRHDERVIKDSDYWMLYLVLAIGSTAQSRRIYDEQYN------NGVNFVSRAMAFA-DRALAPGY-VYQIQS 273
                   67777888888888866666665555555555556777888999999999988888887333......3455567888888.77777777.9***** PP

  Fungal_trans  97 LlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlw 193
                   Llll ly++        + ++g++ r +++lgLh++p+ ++     ++       rr+++++++ lD+ +++ + rp+ + d+++++++P   ++ +
    CCE30607.1 274 LLLLTLYSMLDPAHFDTWHLIGLTARAVVDLGLHQDPPMSS-----VKERSALDLRRKIFYCTYALDRAVSMAHARPFSFTDDSTSVAFPQGINHGE 365
                   ****************************************9.....344444799***********************99**********9888555 PP

  Fungal_trans 194 esddaseetlvetklsneeksrkiasfllaLkkilskiag 233
                    +    ++  ++        s ++a+ l+ L + +s  + 
    CCE30607.1 366 KQAAPGAISGPQ--------SADPALLLFQLRRAQSYWYQ 397
                   555544444444........66666666666666665555 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4  10.8   4.4e-10   2.7e-06       2      31 ..      20      51 ..      19      56 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 4.4e-10
                S-HHHHHCT---STSSSS-HHHHHCT..HHHC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkkln..leCt 31
                aC +Cr  KvKCd+k PaC+ C+k +   eC+
  CCE30607.1 20 ACSRCRAAKVKCDGKLPACTACEKAGreNECS 51
                9************************9888897 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   2.1e-05      0.12      27      46 ..      60      79 ..      51      88 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.1e-05
  Sugarporin_N 27 tiEaRLaaLEkrLqeAeqra 46
                  ++E R+++LE+rL  A++r 
    CCE30607.1 60 ALELRIEKLEQRLDYAKSRR 79
                  7899*************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4516.47
//
Query:       CCE30608.1  [L=457]
Description: probable cellulose 1,4-beta-cellobiosidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.4e-198  658.1   9.7   6.1e-198  657.9   9.7    1.0  1  Glyco_hydro_7  Glycosyl hydrolase family 7


Domain annotation for each model (and alignments):
>> Glyco_hydro_7  Glycosyl hydrolase family 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  657.9   9.7  3.4e-202  6.1e-198       2     434 .]      23     453 ..      22     453 .. 0.99

  Alignments for each domain:
  == domain 1  score: 657.9 bits;  conditional E-value: 3.4e-202
                    -SSS----EEEEEEEECTTSCEEEEEEEEEE-GGGS-EEETTSS-BSEETTEE-TTT-SSHHHHHHHEEE--HHHHHTC-EEEETTEEEEESEEES CS
  Glyco_hydro_7   2 gtktaevhpklttqkCtkaggCkkkkgsvvldanwrwlhkvegstnCytgnkwdktlCpdeetCaknCalegadYeetygittsgdaltlklvtke 97 
                    +++++e+hp l++++C+++g C++++g+v++danwrw+h+v+gs+nCytgn+wd+++C++e+tC+++C+++gadY++tyg+tt+gdal+lk+v+++
     CCE30608.1  23 CSSKPETHPPLSWSRCSRSG-CRSVQGAVTVDANWRWTHRVDGSQNCYTGNRWDTSICSSEKTCSESCCIDGADYAGTYGVTTTGDALSLKFVQQG 117
                    56899*************88.*************************************************************************** PP

                    SSSEEE-EEEEEEEETSTEE-EEE-TTEEEEEEEE-TT--TTEEEEEEEE---TTTTTTT-TT--SGGGGT----BTT--S--SEETTEE--TT-E CS
  Glyco_hydro_7  98 eksknvgsrvylleedekkYemfkllnkeftfdvdvsklpCGlngalyfvemdadGgksksetnkaGakyGtGYCdaqcprdlkfingeaNvegwk 193
                     +sknvgsr+yl++ de++Yemf+ll++eftfdvdvskl CGlngalyfv+md+dGg+++++ nkaGak+GtGYCd+qcprd+kfing aN+++w 
     CCE30608.1 118 PYSKNVGSRLYLMK-DESRYEMFTLLGNEFTFDVDVSKLGCGLNGALYFVSMDEDGGMKRFPMNKAGAKFGTGYCDSQCPRDVKFINGMANSKDWI 212
                    *************9.77******************************************************************************* PP

                    EESSETTEEE-SEEEE--EEEEEEEESSEEEEEEE-BSSSS-EEEEGGGG-S....STTSSSB-SS-EEBETTTTT-TTSEETTS..SEETTS-EE CS
  Glyco_hydro_7 194 pseedanagvgklGacCaemdiweaNsiataltphpcskkgqtkCegeeCgg....eryagvcdkdGCdfnsyrlgnkdfyGkgk..tvdttkkft 283
                    ps++danag+g+lGacCaemdiweaN+ia+a+tphpc+++ +++C+g+ Cgg    +ry+g cd+dGCdfnsyrlgn++fyG+g   t+dtt+k++
     CCE30608.1 213 PSKSDANAGIGSLGACCAEMDIWEANNIASAFTPHPCKNSAYHSCTGDGCGGtyskNRYSGDCDPDGCDFNSYRLGNTTFYGPGPkfTIDTTRKIS 308
                    ***************************************************88999***************************9989********* PP

                    EEEEEEETTSSTTS.EEEEEEEEEETTEEEE---EESTTCES.SSBCHHHHHHHHHHHT-.-HHHHTTHHHHHHHHHHSEEEEEEEEEE-TTTTTH CS
  Glyco_hydro_7 284 vvtqFltddetskgelkeirrlyvqdgkvienskskleglkkvnsitdefCeaqkkvfgdedkfkkkgglkkmgealergmvLvlsiwddkaanml 379
                    vvtqFl+    ++g+l+ei+r+yvq+gkvi+ns s+++g+++ nsit+ fC+aqkk+fg +++f++kgg+k m++a++++mvLv+s+wdd+++nml
     CCE30608.1 309 VVTQFLK---GRDGSLREIKRFYVQNGKVIPNSVSRVRGVPG-NSITQGFCNAQKKMFGAHESFNAKGGMKGMSAAVSKPMVLVMSLWDDHNSNML 400
                    *******...999****************************9.***************************************************** PP

                    HHHSBSSTTS-TTSTTTB-SSS-TTTT-HHHHHHHTTT-EEEEEEEEEEETTTTT CS
  Glyco_hydro_7 380 wLdskyptdkdaskpgvargpCsatsgkpkevekekpdasvtfsnikvGeigstf 434
                    wLds+ypt++  ++ g++rg+C+a+sg+p++ve+++pd++v+fsnik+G+igstf
     CCE30608.1 401 WLDSTYPTNS--RQRGSKRGSCPASSGRPTDVESSAPDSTVVFSNIKFGPIGSTF 453
                    ********99..678***************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3401.10
//
Query:       CCE30609.1  [L=701]
Description: related to SFH1 subunit of the RSC complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-90  302.5   0.0    3.4e-90  302.0   0.0    1.2  1  SNF5          SNF5 / SMARCB1 / INI1
  ------ inclusion threshold ------
       0.43   10.4   2.1       0.88    9.4   2.1    1.4  1  Rubredoxin_2  Rubredoxin metal binding domain


Domain annotation for each model (and alignments):
>> SNF5  SNF5 / SMARCB1 / INI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.0   0.0   3.7e-94   3.4e-90       1     237 []     182     525 ..     182     525 .. 0.91

  Alignments for each domain:
  == domain 1  score: 302.0 bits;  conditional E-value: 3.7e-94
        SNF5   1 qaekpetLvPiridldidk..............................yrlrDtFlwNlhetlitpeqFaqtlveDldlpeeaavveeiskqireqle 69 
                 qa++p tL+Piridldi +                              y+lrD+F+wNlhetl+t++qFaqtl +Dldlp++  +v+eiskqir+qle
  CCE30609.1 182 QASLPLTLIPIRIDLDIAAfvpmaafpppntpsvdvtlpqyrpgemtvpYKLRDIFCWNLHETLVTTDQFAQTLAQDLDLPNKGIIVAEISKQIRTQLE 280
                 89****************9**************************************************************999*************** PP

        SNF5  70 eyagvalhel.ase.....................................kkesatpae..kkeseedtpka........................ki 104
                 eyagvalh+l ++e                                     k+++++pa+  ++ s+ dtp++                        + 
  CCE30609.1 281 EYAGVALHPLfHTEpyappaaapaqtqtaaapiggangslmagtprpsffsKSREESPASfsRGLSRPDTPAQaaggaghraaatpkpggpapqvtaS- 378
                 **********9999999999999999999999999999999998888888744444444455777777777779999999988888888887755431. PP

        SNF5 105 seeeek......eekenkddelRvlikldiqigsklltDkfEWdllsplntpEeFAkqlcadlgLsgefvtaiaHaIrEqvlkykksllesgllvaglk 197
                      +       +++n+dd++R++i+l+++++s+l+tDkfEW+ll+p++t+E+FAk++cadlgL+ge+++a++HaI+E+vl++kk+++e+g+lv+g+ 
  CCE30609.1 379 -----AtpissdCDDYNPDDTYRCIINLSLNMASMLYTDKFEWSLLHPPGTAEAFAKTTCADLGLTGEWIPAMTHAIYEAVLRLKKEACEAGGLVTGWG 472
                 .....02334437777*********************************************************************************** PP

        SNF5 198 kl............eagwrfdee.laeefepkleelskeelekrekerereir 237
                 +l            eagwr+d+e l +++epk+e+lskee+ekre+erere+r
  CCE30609.1 473 GLhqelpndaalgtEAGWRYDPEhLGADWEPKIEILSKEEMEKRENEREREAR 525
                 *8888899999999*********9***************************98 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.1   9.8e-05      0.88      14      25 ..     612     623 ..     607     624 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 9.8e-05
  Rubredoxin_2  14 fGrCpsCgsWnt 25 
                    +rC +C+ W+t
    CCE30609.1 612 TWRCTHCRVWGT 623
                   6**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 5142.98
//
Query:       CCE30610.1  [L=251]
Description: probable D-ribulose-5-phosphate 3-epimerase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-60  204.5   0.0      5e-60  202.3   0.0    1.8  1  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
  ------ inclusion threshold ------
      0.053   12.8   0.1      0.071   12.4   0.1    1.2  1  ThiG            Thiazole biosynthesis protein ThiG
      0.063   12.9   0.1       0.13   11.9   0.0    1.6  2  OMPdecase       Orotidine 5'-phosphate decarboxylase / HUMPS 


Domain annotation for each model (and alignments):
>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.3   0.0   8.3e-64     5e-60       2     198 .]       7     228 ..       6     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 202.3 bits;  conditional E-value: 8.3e-64
                     EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSS-B-B-HHHHHHHGGG........E-S-EEEEEESSSHHHCHHHHHHCT-SEEEEE- CS
  Ribul_P_3_epim   2 iapSllsadfarlgeevkaveeagadllHvDvmDghfvpNltigplvvealrkl........telpldvHLmveevdrivpefaeagasiisvHa 88 
                     iapS+lsadfa+lg +  +  ++gad+lHvD+mDghfvpN+t+g  vv ++rk+         +  +d+H+m++e++++v+ef +ag ++ ++H+
      CCE30610.1   7 IAPSILSADFAQLGADCVRTMDQGADWLHVDIMDGHFVPNITFGAPVVAKIRKHverpseahGKGTFDCHMMIAEPKKWVKEFKNAGCDLYCFHY 101
                     9***************************************************996666544445579**************************** PP

                     S...............T-TTHHHHHHHHHHTTSEEEEEE-TT--GGGGTTTCCC-......SEEEEESS-TT-SS----CCHHHHHHHHHHHHHH CS
  Ribul_P_3_epim  89 E...............alehlkrtiqeikeaGakaglvlnpatplealeyllekl......dlvllmsvePgfgGQkFipevlekikkvrklide 162
                     E               + + +k++i+ i+++G  ag++++p t +++l ++le+       d+vl+m+v PgfgGQkF+ + l+k++++r+++++
      CCE30610.1 102 EaafstaaespeetsdKKTSPKELIRYIHDQGLLAGIAIKPDTSVDVLWDILEAAdpkdkpDMVLVMTVHPGFGGQKFMASELPKVQALRAKYPD 196
                     *88877665555443333467899***************************97552222227*******************************97 PP

                     HT---EEEEESS--TTTCHHHHHHT--EEEESHHHH CS
  Ribul_P_3_epim 163 keldlkievDGGvkldnieqiaeagadvlVagsavf 198
                         ++ievDGG+   +i+q+a+aga+v+Vagsavf
      CCE30610.1 197 ----MNIEVDGGLGPGTIDQAADAGANVIVAGSAVF 228
                     ....*******************************9 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.2e-05     0.071     166     226 ..     186     246 ..     165     251 .] 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.2e-05
                 HHHHHHHH-.SS-BEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHH CS
        ThiG 166 alkiiieea.kvPvivDAGigspsdaaqamelGadavllntavaeakdpvamArafklavea 226
                 +++ ++++  ++ + vD G+g p  + qa + Ga+ ++  +av  akdp ++ + ++ ave+
  CCE30610.1 186 KVQALRAKYpDMNIEVDGGLG-PGTIDQAADAGANVIVAGSAVFGAKDPSEVITLLRDAVES 246
                 567777787789999*****9.78899**************************999999985 PP

>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.68     4e+03      32      55 ..      35      60 ..      14      61 .. 0.65
   2 ?   11.9   0.0   2.1e-05      0.13     182     221 ..     198     236 ..     152     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.68
                EHHHHHHHTHH...HHTHHHHHHHHH CS
   OMPdecase 32 hydlvegwgfe..gtgaklaalarkh 55
                h+d+++g+     ++ga ++a++rkh
  CCE30610.1 35 HVDIMDGHFVPniTFGAPVVAKIRKH 60
                44444444444555666667777666 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.1e-05
                 EEEECTTCCGGGHHHHHHHTTCSEEEESHHHHTSSSHHHH CS
   OMPdecase 182 qggdgkgqqyntpekligiagadiiivGRgIlkagdpvee 221
                   ++ +g+ + t++++++ aga++i++G ++++a+dp e 
  CCE30610.1 198 NIEVDGGLGPGTIDQAAD-AGANVIVAGSAVFGAKDPSEV 236
                 567789999999999988.99****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1762.49
//
Query:       CCE30611.1  [L=136]
Description: uncharacterized protein CPUR_04460 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1011.97
//
Query:       CCE30612.1  [L=78]
Description: uncharacterized protein CPUR_04461 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 618.20
//
Query:       CCE30613.1  [L=528]
Description: uncharacterized protein CPUR_04462 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-15   54.9   0.0    3.9e-14   52.2   0.1    2.2  2  Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
    8.5e-05   22.2   0.1    0.00021   21.0   0.1    1.7  1  ubiquitin  Ubiquitin family
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.53   10.4   0.0    2.1  1  TmoB       Toluene-4-monooxygenase system protein B (TmoB)


Domain annotation for each model (and alignments):
>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.19   1.1e+03       5      26 ..     397     418 ..     394     421 .. 0.79
   2 !   52.2   0.1   6.5e-18   3.9e-14       2      71 ..     457     526 ..     456     527 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.19
                 EEESSS--EEEEEETTSBHHHH CS
   Rad60-SLD   5 lkgkdgkevkikVkptttvskL 26 
                 l +++  +v+++V+ + +++++
  CCE30613.1 397 LDDNSTMHVHFEVWTKAQFEEM 418
                 556666799*******999987 PP

  == domain 2  score: 52.2 bits;  conditional E-value: 6.5e-18
                 EEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEE CS
   Rad60-SLD   2 kiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvv 71 
                 +++lk+ +  +vk+ V+p+ttv++Li+ +++++   + + v + FDG++L++++t+e+ +i+d dt++v 
  CCE30613.1 457 RVVLKSRGLPDVKLTVRPETTVETLITGFQTQQASAVGKDVGIWFDGDRLEEHMTMEEVEIDDLDTLEVH 526
                 89******************************************************************96 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   3.6e-08   0.00021      10      70 ..     467     528 .]     455     528 .] 0.91

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.6e-08
                 EEEEEEETTSBHHHHHHHHHHHHTSSGGGE.EEEETTEEE-TTSBHGGHTTSTTEEEEEEES CS
   ubiquitin  10 kitleveesdtveelKekiaekegipaeqq.rLiysGkvLedertleeygiqdgstlhlvlr 70 
                 ++ l+v +++tve+l    + ++  ++ +   + ++G +Le++ t+ee+ i+d +tl+++++
  CCE30613.1 467 DVKLTVRPETTVETLITGFQTQQASAVGKDvGIWFDGDRLEEHMTMEEVEIDDLDTLEVHVK 528
                 6789*******************999998889***************************986 PP

>> TmoB  Toluene-4-monooxygenase system protein B (TmoB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   8.8e-05      0.53      46      77 ..     494     525 ..     478     526 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.8e-05
        TmoB  46 gaplrVrrqGevlprsmtvaeaglkpldavev 77 
                 g+ + +  +G++l+++mt+ e+++  ld +ev
  CCE30613.1 494 GKDVGIWFDGDRLEEHMTMEEVEIDDLDTLEV 525
                 67788899**********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2009  (0.112053); expected 358.6 (0.02)
Passed bias filter:                      793  (0.04423); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.39
# Mc/sec: 4099.11
//
Query:       CCE30614.1  [L=87]
Description: related to LSM6-Sm-like (Lsm) protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-20   70.7   0.0      7e-20   70.5   0.0    1.0  1  LSM       LSM domain
    0.00019   21.5   0.0    0.00023   21.3   0.0    1.1  1  SM-ATX    Ataxin 2 SM domain
     0.0069   16.5   0.1     0.0079   16.3   0.1    1.1  1  LSM14     Scd6-like Sm domain
  ------ inclusion threshold ------
       0.11   11.6   0.0       0.12   11.5   0.0    1.1  1  SPAN      Surface presentation of antigens protein


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   1.6e-23     7e-20       1      66 [.      20      84 ..      20      85 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 1.6e-23
                HHHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEGGGEEEEE CS
         LSM  1 kflkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRGnnivlis 66
                +fl++ i+  v+v+l++g  ++G L+++D +mN+ Le++ee++++  + r++g+ ++RGnn+++is
  CCE30614.1 20 SFLSNIIGCPVIVKLNSGVIYKGELQSVDGYMNIALEKTEEYVNGA-KRRDYGDAFVRGNNVMYIS 84
                599******************************************9.******************8 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     5e-08   0.00023       7      51 ..      21      63 ..      19      86 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5e-08
                HHHTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS CS
      SM-ATX  7 lltslvGkevevtvknGevyeGifstvslekdfsvvLkmarkvkk 51
                +l +++G++v v++ +G +y+G +++v+    ++++L+ + +  +
  CCE30614.1 21 FLSNIIGCPVIVKLNSGVIYKGELQSVDG--YMNIALEKTEEYVN 63
                5789************************9..9*****99988766 PP

>> LSM14  Scd6-like Sm domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.8e-06    0.0079       1      39 [.      24      61 ..      24      84 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.8e-06
       LSM14  1 efIGskislisksdirYeGilceinledstiaLqnvrsf 39
                ++IG+ + ++ +s++ Y+G l +++    +iaL++   +
  CCE30614.1 24 NIIGCPVIVKLNSGVIYKGELQSVD-GYMNIALEKTEEY 61
                58***********************.8899999996554 PP

>> SPAN  Surface presentation of antigens protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.7e-05      0.12      28      55 ..      51      77 ..      30      83 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.7e-05
        SPAN 28 lkkavekhkteysgdkkdrdygdafvmh 55
                ++ a+ek   ey    k rdygdafv  
  CCE30614.1 51 MNIALEKT-EEYVNGAKRRDYGDAFVRG 77
                55566765.589999999*******965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 699.99
//
Query:       CCE30615.1  [L=424]
Description: uncharacterized protein CPUR_04464 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0032   17.7   0.0     0.0074   16.5   0.0    1.6  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.2e-07    0.0074      17     102 ..     111     221 ..     108     229 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.2e-07
                 ETTTEEEEE-HHHHHHH-HHHHHHHTST.......................TTTTCCCE......EEEETTSGHHHHHHHHHHHHHSEEEC-...CGGG CS
         BTB  17 vgdgkefkahkavLaarSpyFkalftsk.......................eieessvs......eielddvepeafealLefiYtgeleit...seen 83 
                 ++ + ef+     La +Sp+Fka++++                        +      s      e++ ++   e+f  l+++++    +++   + e+
  CCE30615.1 111 CQ-EVEFRLSSRHLALASPVFKAMLSGFwkesapssdqdngsakpwsplqsG------SncqaryELTATEWVVEDFLLLMNIVHGHSGQVPysvDLET 202
                 67.5899999999***************999988877666666666655432......044555699999**************999999998888888 PP

                 HHHHHHHHHHHT-HHHHHH CS
         BTB  84 leelLaaadllqiprlkka 102
                 l+ +  + d++q++++++ 
  CCE30615.1 203 LARMSVLVDYYQCQEVTQF 221
                 88888899*****999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3134.28
//
Query:       CCE30616.1  [L=439]
Description: uncharacterized protein CPUR_04465 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   14.9   0.0        4.3    7.6   0.0    2.6  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00024       4.3      21      49 ..      96     123 ..      91     136 .. 0.77
   2 ?    4.3   0.0    0.0026        46      44     102 ..     175     235 ..     162     243 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00024
                 EEEEE-HHHHHHH-HHHHHHHTST.TTTTC CS
         BTB  21 kefkahkavLaarSpyFkalftsk.eiees 49 
                  +f+     La +Sp+Fk+++++  +  es
  CCE30616.1  96 VQFQLSSRHLALASPVFKTMLNGSwK--ES 123
                 567777778*************9942..33 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0026
                 TTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-...CGGGHHHHHHHHHHHT-HHHHHH CS
         BTB  44 keieessvseielddvepeafealLefiYtgeleit...seenleelLaaadllqiprlkka 102
                 + ++ s+  e++ ++ + e+f  l+++i+  ++ ++   +  +l+++  + d++q+++++++
  CCE30616.1 175 G-SDSSTRYELTATEWDDEVFLTLMNIIHGRNTLVPlsvDLITLVKMSVIVDYYQCQEVTQV 235
                 3.34444448889999999*************9999988888999999999*****999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3316.50
//
Query:       CCE30617.1  [L=405]
Description: uncharacterized protein CPUR_04466 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   18.4   0.0     0.0043   17.3   0.0    1.6  1  BTB         BTB/POZ domain
  ------ inclusion threshold ------
       0.06   13.8   0.2        4.6    7.8   0.0    2.6  2  DUF3019     Protein of unknown function (DUF3019)
      0.071   13.3   0.6        3.3    7.9   0.1    2.5  2  NtCtMGAM_N  N-terminal barrel of NtMGAM and CtMGAM, maltase-g
      0.074   13.0   0.1         13    5.8   0.0    2.3  2  DUF4365     Domain of unknown function (DUF4365)


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   9.6e-07    0.0043      22     102 ..     101     207 ..      95     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.6e-07
                 EEEE-HHHHHHH-HHHHHHHTST...................TTTTCCCE..........EEEETTSGHHHHHHHHHHHHHSEEEC-...CGGGHHHHH CS
         BTB  22 efkahkavLaarSpyFkalftsk...................eieessvs..........eielddvepeafealLefiYtgeleit...seenleelL 88 
                 +f+     La +Sp+Fk+++++                    +                 e++ ++ ++++f  l++++++   +++   + e+l  + 
  CCE30617.1 101 QFRLSSRHLALASPVFKTMLNGSwkesapssersngstktlsQ------LqsgsncevryELTATEWDAKDFLLLMNIVHCHSGQVPysiNLETLGRIS 193
                 67777778****************9999988877666655551......044555566699******************99999999888888999999 PP

                 HHHHHHT-HHHHHH CS
         BTB  89 aaadllqiprlkka 102
                  + d++q++++++ 
  CCE30617.1 194 VLVDYYQCQDVIQF 207
                 999*******9985 PP

>> DUF3019  Protein of unknown function (DUF3019)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.022        98      54      99 ..       3      48 ..       1      51 [. 0.88
   2 ?    7.8   0.0     0.001       4.6      50      98 ..     224     272 ..     220     276 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.022
     DUF3019 54 eltleleaekdlefelrdeeenktlasvklkvasvekktrrrrrnp 99
                 l+++l+ + d+ ++lr  ++++ + + k + ++ ++k++ rrr+ 
  CCE30617.1  3 DLRYDLDPQGDTILVLRCPKTQQAVWEPKNEATKLKQKNKARRRKL 48
                57899999***********************999988888888875 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.001
     DUF3019  50 akegeltleleaekdlefelrdeeenktlasvklkvasvekktrrrrrn 98 
                 ++ + l+++l+ + d++++lr  +++k++ + k +va+ ++k++ rrr+
  CCE30617.1 224 MTIQDLRYDLDPQGDTSLVLRCPNTKKSVWEPKDEVAKLKEKNKTRRRK 272
                 5667899********************************8888888886 PP

>> NtCtMGAM_N  N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.022        97      21      67 ..       2      43 ..       1      66 [. 0.75
   2 ?    7.9   0.1   0.00074       3.3      15      61 ..     221     273 ..     212     300 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.022
  NtCtMGAM_N 21 eelkleveyetddrlrvkItdannkryevpeellprpssssssssks 67
                ++l+ + + + d++l ++   +++  +e+++e  + ++++     k+
  CCE30617.1  2 QDLRYDLDPQGDTILVLRCPKTQQAVWEPKNEATKLKQKN-----KA 43
                78999999**********************9965443322.....22 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00074
  NtCtMGAM_N  15 vygndieelkleveyetddrlrvkItdannkryevpeellprpsss......s 61 
                 +    i++l+ + + + d+ l ++  +++++ +e+++e+ + ++++       
  CCE30617.1 221 PTTMTIQDLRYDLDPQGDTSLVLRCPNTKKSVWEPKDEVAKLKEKNktrrrkL 273
                 556689********************************875444332233330 PP

>> DUF4365  Domain of unknown function (DUF4365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0028        13      76     115 ..       3      42 ..       1      48 [. 0.80
   2 ?    4.8   0.0    0.0055        25      72     115 ..     224     267 ..     216     283 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0028
     DUF4365  76 nlnyllnlsvpvilvlvdlptekayWvslkgadktsnekk 115
                 +l+y l++++ +ilvl ++ t++a W+  ++a k  +++k
  CCE30617.1   3 DLRYDLDPQGDTILVLRCPKTQQAVWEPKNEATKLKQKNK 42 
                 577779999******************9999755554443 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0055
     DUF4365  72 ldvknlnyllnlsvpvilvlvdlptekayWvslkgadktsnekk 115
                 + +++l+y l++++ + lvl +++t+k  W+  ++++k  +++k
  CCE30617.1 224 MTIQDLRYDLDPQGDTSLVLRCPNTKKSVWEPKDEVAKLKEKNK 267
                 567788888*********************99888844444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2951.90
//
Query:       CCE30618.1  [L=221]
Description: uncharacterized protein CPUR_04467, partial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.7   0.1       0.32   11.4   0.1    1.7  1  FAO_M     FAD dependent oxidoreductase central domain


Domain annotation for each model (and alignments):
>> FAO_M  FAD dependent oxidoreductase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.8e-05      0.32       6      29 ..      20      42 ..      18      44 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.8e-05
       FAO_M  6 iDlwevDirRFgdlhnnreylrer 29
                +D+ +v+++RF d+  + e++r r
  CCE30618.1 20 RDMLPVHMSRFADHI-TTEWIRGR 42
                8***********888.8****988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1641.40
//
Query:       CCE30619.1  [L=545]
Description: uncharacterized protein CPUR_04468 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-05   25.1   0.0     0.0084   16.3   0.0    2.5  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0008        14      53     102 ..      19      71 ..       6      77 .. 0.86
   2 !   16.3   0.0   4.7e-07    0.0084      20     102 ..     253     347 ..     249     355 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0008
                 EEEETTSGHHHHHHHHHHHHHSEEEC-...CGGGHHHHHHHHHHHT-HHHHHH CS
         BTB  53 eielddvepeafealLefiYtgeleit...seenleelLaaadllqiprlkka 102
                 e++ ++ ++++f  l+++i+  +++++   + e+l  +  + d++q+++++++
  CCE30619.1  19 ELTATEWDANDFLLLMRVIHGRNIQVPlsiDLETLGRISVLVDYYQCEEVTRL 71 
                 78889999*******************999999999999999*****999876 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 4.7e-07
                 TEEEEE-HHHHHHH-HHHHHHHTST........TTTTCCCE.......EEEETTSGHHHHHHHHHHHHHSEEEC-...CGGGHHHHHHHHHHHT-HHHH CS
         BTB  20 gkefkahkavLaarSpyFkalftsk........eieessvs.......eielddvepeafealLefiYtgeleit...seenleelLaaadllqiprlk 100
                 + +f+ +   L+ +Sp+Fk+++++                        e++ ++ ++e+f  l+++++  + +++   + e l  +  + d++q+++++
  CCE30619.1 253 EVQFRLCSRHLSLASPVFKTMLNGVwkesappsD------WsdcqvryELTATEWDAEDFLLLMNIVHGCNQRVPlfiDLERLGRISVLVDYYQFQKVT 345
                 5689999999***************866665542......044455589*********************99999999889999999999999999998 PP

                 HH CS
         BTB 101 ka 102
                 ++
  CCE30619.1 346 QL 347
                 86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4090.42
//
Query:       CCE30620.1  [L=68]
Description: uncharacterized protein CPUR_04469 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.02   14.9   0.1       0.02   14.9   0.1    1.1  1  Pico_P2A  Picornavirus core protein 2A


Domain annotation for each model (and alignments):
>> Pico_P2A  Picornavirus core protein 2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   1.1e-06      0.02      19      60 ..       4      45 ..       1      65 [. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-06
    Pico_P2A 19 srdllvvrttahGadtiarCnCttgvyycksrrkyypvsvek 60
                +  ++++  +a G+   a  +C++g+yyc s  k    s+ +
  CCE30620.1  4 NTSVFIAALAAIGTVVQAAHTCKSGLYYCGSALKNMNYSFLN 45
                56788999999****9*************9988876665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 509.92
//
Query:       CCE30621.1  [L=386]
Description: uncharacterized protein CPUR_04470 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0046   17.2   0.0       0.01   16.0   0.0    1.5  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.7e-07      0.01      21     103 ..     100     209 ..      86     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.7e-07
                 EEEEE-HHHHHHH-HHHHHHHTST..................TTTTCCCE............EEEETTSGHHHHHHHHHHHHHSEEEC-...CGGGHHH CS
         BTB  21 kefkahkavLaarSpyFkalftsk..................eieessvs............eielddvepeafealLefiYtgeleit...seenlee 86 
                  +f+     La +Sp+F+a++++                   +                   e++ +d + e+f +l+++++  +  ++   + ++l++
  CCE30621.1 100 IHFRLSSRHLALASPVFRAMLNGSwkesapaldrsnngsaktR------AplqlgfdsqvrfELTAEDWDDEVFLILMNIVHGRNALVPlssDLTTLVK 192
                 678888888****************999999987765554440......1555666666668***********************99998877778888 PP

                 HHHHHHHHT-HHHHHHH CS
         BTB  87 lLaaadllqiprlkkac 103
                 +  + d++q++++++++
  CCE30621.1 193 MSVLVDYYQCQEVTQVV 209
                 88888******999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2968.66
//
Query:       CCE30622.1  [L=214]
Description: uncharacterized protein CPUR_04471 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.6   0.0      0.026   14.8   0.0    1.4  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.4e-06     0.026      21      79 ..     104     185 ..      99     212 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.4e-06
                 EEEEE-HHHHHHH-HHHHHHHTST.....................TTTTCCCE........EEEETTSGHHHHHHHHHHHHHSEEEC- CS
         BTB  21 kefkahkavLaarSpyFkalftsk.....................eieessvs........eielddvepeafealLefiYtgeleit 79 
                  +f+     La +Sp+Fk++++++                     +      +        e++ ++ + e+f +l+++i+  ++ ++
  CCE30622.1 104 VQFRLSSRHLALASPVFKTMLNGTwkesaapsdqskksaktrkppK------KdsdsstryELTATEWDDEVFLMLMNIIHGRNTLVP 185
                 678888888****************999998887776666666541......033344667888888888999999999998887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1612.98
//
Query:       CCE30623.1  [L=112]
Description: uncharacterized protein CPUR_04472 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       161  (0.00897987); expected 358.6 (0.02)
Passed bias filter:                      152  (0.00847788); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 803.96
//
Query:       CCE30624.1  [L=210]
Description: uncharacterized protein CPUR_04473 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1613.12
//
Query:       CCE30625.1  [L=230]
Description: uncharacterized protein CPUR_04474 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1886.25
//
Query:       CCE30626.1  [L=99]
Description: uncharacterized protein CPUR_04475 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.057   13.9   0.0      0.071   13.6   0.0    1.3  1  SUI1      Translation initiation factor SUI1
       0.13   11.9   0.0       0.15   11.7   0.0    1.1  1  Imm64     Immunity protein 64


Domain annotation for each model (and alignments):
>> SUI1  Translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.9e-06     0.071      27      60 ..      58      94 ..      28      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.9e-06
        SUI1 27 fgidlkklakelkkkfacsgsvvk...dggeeiqvQG 60
                 ++ l +l+k+lkkkf+ +  + k   +++  + +QG
  CCE30626.1 58 SDFSLRQLVKALKKKFSPGDYILKanlSSQYKVLLQG 94
                67899*****************995443368899999 PP

>> Imm64  Immunity protein 64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.7e-05      0.15      25      69 ..       8      52 ..       2      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.7e-05
       Imm64 25 niveylvdsdgiikeikyskdeegedWieesvdskifrdiyksls 69
                n+ ++++ ++    +++ +k+++ + Wi   v+s+ +++i + l+
  CCE30626.1  8 NLRQFMMAQETAEYNLRSPKEQQIQLWISACVESNAYNTITSKLT 52
                777899999*****************************9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 863.52
//
Query:       CCE30627.1  [L=586]
Description: related to putative cystathionine beta-lyase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-55  188.7   0.0    3.5e-55  187.1   0.0    1.8  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.067   12.1   0.0       0.11   11.4   0.0    1.3  1  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1   0.0     4e-59   3.5e-55       5     381 ..     181     571 ..     177     572 .. 0.85

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 4e-59
                      HHTTTTCHTTTTBSS--B---SBBBESSHHHH.................CTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHH CS
  Cys_Met_Meta_PP   5 vhagqekdeqtgavavpiyltstykfkdvdea.................fageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAia 81 
                      vha+     +++ava++++ ++t++++d  e+                  +   ++++YsR  np+++ le+ ++ + gg  ++ ++sG+aA  
       CCE30627.1 181 VHADDFIS-THRAVAPAMHVSTTFRYSDDPEElhrsgdpkkladwnnldPTAPLDSHIYSRDSNPNTTRLEAVLTSILGGP-SITYASGLAAFY 272
                      55555543.899999999999999999765557888999999988665333344569*********************997.5789*******5 PP

                      HHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGT CS
  Cys_Met_Meta_PP  82 aailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDnt 175
                      a+++ l     + ++  + Y g++ +++ + + +g++     + d++el        +++++Etp np+ +   ++  a+ a+++g+ + vD+t
       CCE30627.1 273 AMLVCL---NPKRIAIGEGYHGCHGVIQILSRLTGLKKLPLHC-DPSELG-----PGDVIHVETPLNPTGEARNLQYYADRAHQVGAYLTVDAT 357
                      444433...3456888899********9999999999877776.455553.....579************************************ PP

                      TTHTTTS-GGGGT-SEEEEETTTTTTCSSS--EEEEEES...SCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH CS
  Cys_Met_Meta_PP 176 faspllqrplklgaDivvhSaTKylgGhsdvvaGvivvk...gkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAef 266
                      fa p lq pl+++aD+++hS+TKy+gGhsd++ Gv++v+   + e ++k+l++    lG+v+   + wl lr l+TL+lR+ r++++A ++  +
       CCE30627.1 358 FAPPPLQDPLAFDADMIMHSGTKYMGGHSDMLCGVLTVSptrDAEGWAKQLRNERLVLGSVMGSLEGWLGLRSLRTLELRVTRQSQTATALVAW 451
                      ************************************97622255779999999999************************************** PP

                      HHTS........T......TEEEEE-TTSTTST..THHHHHHHSSSG-S.EEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTT CS
  Cys_Met_Meta_PP 267 Lekh........p......kvekvyYpglpshp..qhelakkqlkgagg.vlsFelkseeekakkfvdnlklfslaeslGgveslielpasmth 343
                      L+++        p       ve++ +++l+ +   +    ++q+kg+ g v++  +k+  e+akk+ ++lklf +a+slGgveslie  a++  
       CCE30627.1 452 LSSElkqkqgqqPssavarVVESLHHASLQPEAadENSWLRRQMKGGYGpVFAIVMKDM-EQAKKLPSRLKLFHHATSLGGVESLIEWRAMT-- 542
                      *998766666552666665889999****865411556789999999888***999988.78************************998765.. PP

                      TTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 344 asipkeereaagvtddliRlsvGiEdvdDliaDlkqal 381
                               +  v+++l+R+s+G+E ++Dl+aDl+qal
       CCE30627.1 543 ---------DPNVNPRLMRVSIGVESFEDLKADLEQAL 571
                      .........4678899*********************9 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.2e-05      0.11     144     204 ..     324     383 ..     320     398 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.2e-05
                  EEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTTTS CS
  Aminotran_5 144 aithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghKllg 204
                  ++    n tG    ++  +++a+++ga++ vDa+ a +  + d  ++++D+++ sg K++g
   CCE30627.1 324 HVETPLNPTGEARNLQYYADRAHQVGAYLTVDATFAPPPLQ-DPLAFDADMIMHSGTKYMG 383
                  555556889999999*****************998877765.8889************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4800.26
//
Query:       CCE30628.1  [L=247]
Description: related to nodulation protein nodB [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-21   75.0   0.0    5.8e-21   74.7   0.0    1.2  1  Polysacc_deac_1  Polysaccharide deacetylase
     0.0016   17.7   0.0     0.0042   16.3   0.0    1.7  2  Polysacc_deac_2  Divergent polysaccharide deacetylase
     0.0062   16.3   0.1     0.0088   15.8   0.1    1.2  1  RP854            Uncharacterized protein RP854
  ------ inclusion threshold ------
      0.038   14.0   0.1       0.78    9.7   0.0    2.2  2  pPIWI_RE_REase   REase associating with pPIWI_RE
      0.067   13.1   0.0       0.31   10.9   0.0    1.8  2  PS_pyruv_trans   Polysaccharide pyruvyl transferase
       0.13   12.2   0.0        1.9    8.4   0.0    2.4  2  GFRP             GTP cyclohydrolase I feedback regulatory pro
        0.2   12.6   0.0       0.34   11.9   0.0    1.4  1  LPD29            Large polyvalent protein associated domain 2


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   2.3e-24   5.8e-21       3     109 ..      44     158 ..      42     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 2.3e-24
                      HTTSTEEEEEEEESSCSCHHHHHHHHHHCT--EEEEE-HHHHCH-...HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHH CS
  Polysacc_deac_1   3 tkgkksvalTfDdgprdntteilpvLkkykvkatffvigglvedy...pdevremaasGveignHtinhsnlkrlseeevrreierakdalrka 93 
                      t+++k++al  Dd+p++ t+ei++vL++y+++atffvig++v+++   ++ +r++ ++G+e++nH+++ +  + ls +++++e++++k +l ka
       CCE30628.1  44 TTPDKIIALSLDDAPSTRTDEIMDVLREYNAHATFFVIGSQVQKQphrEEMLRRLIREGHELANHGMHDEPASGLSLRQLEDEVGEVKSILTKA 137
                      789**************************************9999888899******************************************9 PP

                      HS----E.....EE-GGGEE- CS
  Polysacc_deac_1  94 lgreprl.....fryPygsas 109
                      ++ e ++     +r+  g ++
       CCE30628.1 138 YEAEGKVlpnnyYRPGSGFFT 158
                      877655533333666666555 PP

>> Polysacc_deac_2  Divergent polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.4   3.7e+03     111     130 ..      64      87 ..      59     103 .. 0.53
   2 !   16.3   0.0   1.7e-06    0.0042     177     213 .]     201     238 ..     195     238 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.4
                      HHHHHHHHTT....-EEEE-S--T CS
  Polysacc_deac_2 111 avleelkerg....llflDsrtsa 130
                      +++++l+e++    ++++ s+ ++
       CCE30628.1  64 EIMDVLREYNahatFFVIGSQVQK 87 
                      344444444333324444455444 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.7e-06
                      EEEEEEE-SCC.HHHHHHHHHHHHHHCTEEE--HHHH- CS
  Polysacc_deac_2 177 saiaighprpe.tieaLkewlpeleaegielvpvsall 213
                       a++i+h r e t+ +L+ +lpel+++g+++v+vs+l+
       CCE30628.1 201 GAVIICHDRREwTAPMLRLVLPELRERGYRVVTVSELV 238
                      699******887************************96 PP

>> RP854  Uncharacterized protein RP854
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.4e-06    0.0088     152     209 ..      11      72 ..       5      75 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.4e-06
       RP854 152 tflkifseiysymppntlisfvrvrneevl....tpkniyklsvnhapnliyaklilyirel 209
                  +l i+s    y pp +lis++r +  +vl    tp +i  ls++ ap      ++  +re 
  CCE30628.1  11 LLLPIYSLYCIYKPPAALISYLRRKYPDVLfevtTPDKIIALSLDDAPSTRTDEIMDVLREY 72 
                 56789999899************998654433339*************98777777777765 PP

>> pPIWI_RE_REase  REase associating with pPIWI_RE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.082   2.1e+02      56      93 ..      65     101 ..      55     111 .. 0.74
   2 ?    9.7   0.0   0.00031      0.78      70     110 ..     204     242 ..     192     244 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.082
  pPIWI_RE_REase  56 lekldkgdpadeaflVvPdereeqrpdyravlrralpk 93 
                     + ++ ++  a+++f+V+  ++++q p  ++ lrr  ++
      CCE30628.1  65 IMDVLREYNAHATFFVIGSQVQKQ-PHREEMLRRLIRE 101
                     556667889999******999666.7777777776654 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00031
  pPIWI_RE_REase  70 lVvPdereeqrpdyravlrralpkakklevltesefleavk 110
                     ++  d+re++ p++r vl + +++   ++v+t+se+++av+
      CCE30628.1 204 IICHDRREWTAPMLRLVLPELRERG--YRVVTVSELVKAVE 242
                     6667999**************9665..***********996 PP

>> PS_pyruv_trans  Polysaccharide pyruvyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.31      10      72 ..      27      83 ..      25     106 .. 0.86
   2 ?   -0.2   0.0       0.3   7.8e+02       6      36 ..     156     186 ..     152     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                    HHHHHHHHTT-EEEEEESSTTT--HHHHHHHHHTS-GGGEE................EEE--E CS
  PS_pyruv_trans 10 alvklLrelgpdaeiivltpdpsetkkllkvktpilkklskvllkrlrkkdiddaddviivGg 72
                    al+ +Lr+++pd+ + v tpd   +  l++  + +++ + +vl+ ++ +        ++++G+
      CCE30628.1 27 ALISYLRRKYPDVLFEVTTPDKIIALSLDDAPSTRTDEIMDVLREYNAHAT------FFVIGS 83
                    899*******************************************88764......888887 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.3
                     HHHHHHHHHHHHTT-EEEEEESSTTT--HHH CS
  PS_pyruv_trans   6 lilealvklLrelgpdaeiivltpdpsetkk 36 
                      + ++++++L ++g++ ++ ++ p++++ ++
      CCE30628.1 156 FFTYGMRDMLGSRGYRIVLGSVYPHDPQIPY 186
                     6679999999999999999999988776655 PP

>> GFRP  GTP cyclohydrolase I feedback regulatory protein (GFRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.18   4.7e+02      57      68 ..     163     174 ..     158     181 .. 0.84
   2 ?    8.4   0.0   0.00075       1.9      53      71 ..     218     236 ..     203     241 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.18
        GFRP  57 nkLekkGykvva 68 
                 ++L ++Gy++v 
  CCE30628.1 163 DMLGSRGYRIVL 174
                 899******995 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00075
        GFRP  53 rvvLnkLekkGykvvamtg 71 
                 r vL  L ++Gy+vv++++
  CCE30628.1 218 RLVLPELRERGYRVVTVSE 236
                 78*************9986 PP

>> LPD29  Large polyvalent protein associated domain 29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013      0.34      12      61 ..      30      79 ..      26     108 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
       LPD29 12 keLKaaFPgvKFSVrkerysgssinvswmdgPteeq..vaevtkkles.adfn 61
                 +L++++P+v F V++ ++    i  s+ d+P +    + +v++++++ a+f 
  CCE30628.1 30 SYLRRKYPDVLFEVTTPDKI---IALSLDDAPSTRTdeIMDVLREYNAhATFF 79
                58****************98...*********994434666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2194.99
//
Query:       CCE30629.1  [L=1122]
Description: probable pre-mRNA splicing factor ATP-dependent RNA helicase PRP16 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-23   81.1   0.0    6.6e-23   81.1   0.0    3.2  4  HA2          Helicase associated domain (HA2)
    1.1e-19   70.6   0.0    3.3e-19   69.0   0.0    1.8  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    8.5e-14   51.8   0.0    2.2e-13   50.5   0.0    1.7  1  Helicase_C   Helicase conserved C-terminal domain
      2e-07   30.9   0.0    4.4e-07   29.8   0.0    1.6  1  DEAD         DEAD/DEAH box helicase
    2.8e-06   27.6   0.1    7.5e-06   26.3   0.1    1.6  1  AAA_22       AAA domain
    5.2e-06   26.0   0.0    8.1e-06   25.4   0.0    1.3  1  DDE_Tnp_1_7  Transposase IS4
    0.00018   21.3   0.5     0.0014   18.4   0.0    2.6  3  AAA_30       AAA domain
    0.00033   21.0   0.1      0.001   19.4   0.1    1.8  1  AAA_19       AAA domain
     0.0035   16.6   0.0     0.0091   15.3   0.0    1.7  1  DUF2075      Uncharacterized conserved protein (DUF2075)
      0.006   16.6   0.0       0.65   10.0   0.0    2.5  2  ResIII       Type III restriction enzyme, res subunit
     0.0094   15.3   0.0      0.022   14.1   0.0    1.6  1  ATPase       KaiC
  ------ inclusion threshold ------
      0.021   13.9   0.0      0.045   12.8   0.0    1.5  1  T2SSE        Type II/IV secretion system protein
      0.046   13.7   0.0        0.1   12.6   0.0    1.6  1  Flavi_DEAD   Flavivirus DEAD domain
      0.054   13.1   0.0        0.1   12.2   0.0    1.4  1  SRP54        SRP54-type protein, GTPase domain
      0.061   12.8   0.0       0.17   11.3   0.0    1.7  2  PhoH         PhoH-like protein
      0.069   13.2   0.1       0.29   11.1   0.1    2.0  1  AAA_14       AAA domain
       0.07   13.7   0.1       0.39   11.2   0.0    2.3  2  ABC_tran     ABC transporter
       0.15   12.1   1.2       0.57   10.2   1.2    2.0  1  Spc42p       Spindle pole body component Spc42p


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.5       2.6   2.5e+03      66      84 ..      89     121 ..      81     145 .. 0.48
   2 ?   -2.2   0.0       4.9   4.9e+03      79      92 ..     202     215 ..     165     230 .. 0.50
   3 !   81.1   0.0   6.6e-26   6.6e-23       4     107 ..     678     762 ..     675     798 .. 0.85
   4 ?   -2.5   0.8       6.4   6.3e+03      78      89 ..     928     942 ..     899     951 .. 0.43

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.6
         HA2  66 eeneeekeeeee.........e.....eekakk 84 
                 +++ ++ e e++         +     +e+++k
  CCE30629.1  89 SYEVSAWEAEQQetskadkmaSrydarQEQRRK 121
                 444443333333222222222122221222222 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.9
         HA2  79 eekakkkrkeeeka 92 
                 e++++++r++++++
  CCE30629.1 202 EARQQSERQKQAQQ 215
                 22222222222222 PP

  == domain 3  score: 81.1 bits;  conditional E-value: 6.6e-26
         HA2   4 lLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrklahkdae 102
                 +L algALd+ g+lTelGrkm+++P++p+lak+L++a e+  gc++e+itiv++lsv ++f +++e ++e ++      +++++  ++           
  CCE30629.1 678 DLWALGALDNLGELTELGRKMSAFPMDPSLAKLLITAEEY--GCTEEMITIVSMLSVPNVFYRPKERQDEADA------QREKFWVHE----------- 757
                 699******99**************************666..***********************87655443......333333333........... PP

         HA2 103 gDhlt 107
                 +Dhlt
  CCE30629.1 758 SDHLT 762
                 66666 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 6.4
         HA2  78 e...eekakkkrkee 89 
                 +   +++++++rk++
  CCE30629.1 928 QmaeDKRRDEERKKA 942
                 122122222222222 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   3.3e-22   3.3e-19       1      81 [.     821     897 ..     821     899 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 3.3e-22
                  HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHST CS
  OB_NTP_bind   1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfag 81 
                  +r+++++G+y q ar++ s++ y  +rt+  v++hp+S+l      ++p++vvy+el+ t+k+y+ ++ta+dp wL+ ++g
   CCE30629.1 821 IRKCICSGYYHQAARYKGSGE-YINLRTNLAVQLHPTSALYG---GHPPDYVVYHELILTSKVYVSTVTAVDPHWLADLGG 897
                  89******************9.999999*************7...79******************************9987 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   2.2e-16   2.2e-13      12     111 .]     488     613 ..     477     613 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 2.2e-16
                 HTTTTSEEEEEESSHHHHHH.HHHHHHHT.......TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS....SSH. CS
  Helicase_C  12 leeeggkilifvntidrlek.vklllekk.......gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp....rnv. 97 
                  + + g+il+f++ ++++e  ++l++++        +++++++++++p++ + +i+++   g +++++at++ae++++++++++V++ ++     +n+ 
  CCE30629.1 488 VSMDAGDILVFMTGQEDIEItCELVQKRLdalndapKLSILPIYSQMPADLQAKIFDRAAPGVRKCIVATNIAETSLTVDGIKYVVDAGYSkmkvYNPk 586
                 5678899*********887775666333355566789*****************************************************965554448 PP

                 .............HHHHHHHTTSSSTT CS
  Helicase_C  98 .............tsyiqriGRtgRag 111
                              +++ qr+GR+gR g
  CCE30629.1 587 mgmdtlqitpisqANASQRSGRAGRTG 613
                 8999999999999************86 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   4.4e-10   4.4e-07       3     171 ..     289     442 ..     287     447 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 4.4e-10
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdiv 101
                 + +e +  i +++  +v +eTGsGKT+     ++++ y     +  ++ +  P r  a  +++++ + ++   +++  +i g a r +  +  +++ i 
  CCE30629.1 289 VREELLRVIRENQVTIVIGETGSGKTTQLTQFLYEEGY----GRVGMIGCTQPRRVAAMSVAKRVAEEMD---VEL-GTICGYAIRFEDHTS-KETVIK 378
                 5678888999999*************996666665554....2333666899******999999999988...333.445567777777777.8899** PP

                 EEEHHHHHH.HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.H CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
        DEAD 102 vgtpgrldd.llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.k 171
                 + t g l++  l++    l++ +++++DEa++   +   d +  +++++ q   d k    +iv SAT++ k
  CCE30629.1 379 YLTEGILLReSLNEPD--LDRYSCIIMDEAHERALN--TDILLGLFKKILQRRRDLK----LIVTSATMNaK 442
                 ********94556555..*************99887..8999999999988888877....********955 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   7.6e-09   7.5e-06       4     127 ..     299     434 ..     296     443 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 7.6e-09
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.........erlsseellealeqalrarav.. 91 
                 + ++++v+Ge+G+GKTt l ++l++          r++ + +t p      ++++++++++++el +            s+e ++++l++ +  r    
  CCE30629.1 299 ENQVTIVIGETGSGKTTQLTQFLYEEGYG------RVGMIGCTQPRRVAAMSVAKRVAEEMDVELGTicgyairfeDHTSKETVIKYLTEGILLRESln 391
                 67899********************8533......7777777777777***************************755555555577777666666667 PP

      AAA_22  92 ......ielliiDEaqh..lrseealeeL..rsllnlsrkgvqliL 127
                        +++i DEa+   l + ++l  L  ++l+   r +++li+
  CCE30629.1 392 epdldrYSCIIMDEAHEraL-NTDILLGLfkKILQR--RRDLKLIV 434
                 77788888********9544.433333333333444..77777775 PP

>> DDE_Tnp_1_7  Transposase IS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   8.1e-09   8.1e-06       9     107 ..     978    1111 ..     970    1122 .] 0.72

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 8.1e-09
  DDE_Tnp_1_7    9 flpdkilerivkatNayakqk...............................kkwleltaeElkaFlGllllmglvrlpsvedyWstkdfyg.... 69  
                   f ++ ++er v+ tN  a  +                                +w ++  +E++ Fl++l+  g+++  + e yWs+   +     
   CCE30629.1  978 FCTEHLVERWVDWTNSWAAHRlsqrddearpqassnvvdeassdneaqrvglAEWVPTCVAEIYIFLAILIYDGIHKEDNYETYWSDPVTIAigag 1073
                   555555555555555555544555555555666666666666666666788899********************************9884444455 PP

  DDE_Tnp_1_7   70 ..npllseiMsreRFeeilsalhladnstkkaekdklkkv 107 
                     ++++ + M+++RF+++ +++++ d+ +++   d l  +
   CCE30629.1 1074 vpTHKILKFMTYRRFKQLCRHIRIFDPWNEPR--DSLDRL 1111
                   66999******************999765443..555544 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.1   1.1e+03      40      82 ..     124     172 ..     120     220 .. 0.75
   2 !   18.4   0.0   1.4e-06    0.0014      17      98 ..     299     407 ..     290     434 .. 0.75
   3 ?   -2.0   0.0       2.5   2.5e+03      81      99 ..     992    1020 ..     982    1035 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.1
      AAA_30  40 eaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk.........g 82 
                 +awe++ + v g+A     A++  +e   ea +++ l++ l+          
  CCE30629.1 124 DAWETNRMLVSGVAQRRDTAADFDDE---EATRVHMLVHDLRppfldgktiF 172
                 68999999999999999999999987...88999999988876666554440 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.4e-06
      AAA_30  17 gdrvavltGpAGtGKttalkal..reaweaag.......grviglAptgkaAkvLaeelgi............eastiakllkrlk............. 81 
                 +++v+++ G  G+GKtt l++   +e + + g       +rv++++  +++A+++  elg+                        k             
  CCE30629.1 299 ENQVTIVIGETGSGKTTQLTQFlyEEGYGRVGmigctqpRRVAAMSVAKRVAEEMDVELGTicgyairfedhtS-----------Ketvikyltegill 386
                 456**************9998755777777779***********************999963333333333323...........13445555566799 PP

      AAA_30  82 ....grarlepgtllivDEag 98 
                     ++ +l++ +++i DEa 
  CCE30629.1 387 reslNEPDLDRYSCIIMDEAH 407
                 999966789999999999995 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.5
      AAA_30   81 k..........grarlepg.tllivDEagm 99  
                  +          +  + +p+ +  +vDEa+ 
  CCE30629.1  992 NswaahrlsqrD-DEARPQaSSNVVDEASS 1020
                  444455566642.44566668999***996 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1     1e-06     0.001       8     129 ..     298     427 ..     291     434 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1e-06
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhival.....lvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelle......... 92 
                  +++v +v++  G+GKT+ l++ + +     +  +g  +p++++++++++r a+e+         e  Ti + a+  f+d +++  ++++         
  CCE30629.1 298 RENQVTIVIGETGSGKTTQLTQFLYEegygrVGMIGCTQPRRVAAMSVAKRVAEEMDV-------ELGTICGYAI-RFEDHTSK-ETVIKyltegillr 387
                 57899*************9998764311111223333344555555555555555555.......5577776644.33333322.12223333666666 PP

      AAA_19  93 eaeeekklqeee.llivDEfqd..vd.elqyrLlkallgek 129
                 e+ +e +l +++ ++i DE+ +  ++ +    L+k++l+++
  CCE30629.1 388 ESLNEPDL-DRYsCIIMDEAHEraLNtDILLGLFKKILQRR 427
                 77778889.6666******9862244556667777777655 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.1e-06    0.0091       2      99 ..     301     409 ..     300     432 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.1e-06
     DUF2075   2 avvlVtGvaGtGKtvvllnllael.......eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsef...kkaeekkeepked 90 
                 +v +V G++G+GKt  l ++l+e            + r+++ +sv ++  + +  +l        + e+ +  +++i+ l+e+   ++  ++ + ++  
  CCE30629.1 301 QVTIVIGETGSGKTTQLTQFLYEEgygrvgmIGCTQPRRVAAMSVAKRVAEEMDVELGTICGYAIRFEDHTSKETVIKYLTEGillRESLNEPDLDRYS 399
                 7899*******************9888888877779999999*****9999999999777745555566777788999999999*999999******** PP

     DUF2075  91 vvivDEAh.r 99 
                 ++i+DEAh r
  CCE30629.1 400 CIIMDEAHeR 409
                 ********44 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.05        50      22      45 ..     298     321 ..     272     324 .. 0.71
   2 !   10.0   0.0   0.00065      0.65     122     169 ..     387     439 ..     351     441 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.05
                 .TTSEEEEEESTTSTHHHHHHHHH CS
      ResIII  22 krdkrglikmaTGtGKTlvaakli 45 
                 ++++  ++  +TG+GKT  ++++ 
  CCE30629.1 298 RENQVTIVIGETGSGKTTQLTQFL 321
                 5666778899*******9877765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00065
                 .....HHHTTT-SEEEEETGGGTTS.T.....TTHHHHHT---SEEEEEESS- CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgakk.....swreilekfkeavllglTATp 169
                 +e  +e + dr+ +ii+DEaH  + ++      +++il+  ++ +l+  +AT+
  CCE30629.1 387 RESLNEPDLDRYSCIIMDEAHERALNTdillgLFKKILQRRRDLKLIVTSATM 439
                 56678899999**********98886456666899999988888888888887 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.2e-05     0.022      16      51 ..     297     330 ..     291     374 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
      ATPase  16 ipegrvvlitGepGtGKtifalqFlikgaekygepg 51 
                 i e++v+ + Ge+G+GKt+   qFl++    yg+ g
  CCE30629.1 297 IRENQVTIVIGETGSGKTTQLTQFLYEE--GYGRVG 330
                 7899**********************86..445544 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.5e-05     0.045     115     150 ..     290     321 ..     237     325 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.5e-05
       T2SSE 115 kekiaevlrkavrerglilvsGgTgsGKttllyall 150
                 +e++ +v    +re+++ +v G TgsGKtt l   l
  CCE30629.1 290 REELLRV----IRENQVTIVIGETGSGKTTQLTQFL 321
                 3444444....4566888899*********997665 PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0    0.0001       0.1       2     105 ..     298     407 ..     297     443 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0001
                 XX--EEEEE--TTS-TTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHT.TTS-EEE--.....-----------SEEEEEHHHHHHHHHHT---- CS
  Flavi_DEAD   2 rkkkltvldlhPGaGktrkvlpelvkeaierrlrtlvLaPtrvvlaemeeal.kglevrykt.....savkeektgrelvdvmchatftkrllspvrkk 94 
                 r++++t++    G+Gkt ++   l +e + r        P rv +  +++ + ++++v+  t       ++++++++ ++  +    + +  l++    
  CCE30629.1 298 RENQVTIVIGETGSGKTTQLTQFLYEEGYGRVGMIGCTQPRRVAAMSVAKRVaEEMDVELGTicgyaIRFEDHTSKETVIKYLTEGILLRESLNEPDLD 396
                 5678889999999***999888888888888777778889999877776554156677765522211235577778899******************** PP

                 --SEEEEETTT CS
  Flavi_DEAD  95 nyeliimDeah 105
                 +y  iimDeah
  CCE30629.1 397 RYSCIIMDEAH 407
                 *********** PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0001       0.1       2      60 ..     301     358 ..     300     446 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0001
                 EEEEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEEESTSSTTHHHHHHHHHHHTTEEEE CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkke.gkkvllvaaDtfRaaAveQLktlaeklgvpvi 60 
                 +v++++G +G+GKTt l++    +++  g+  ++ ++   R+aA+   k +ae+++v++ 
  CCE30629.1 301 QVTIVIGETGSGKTTQLTQFL--YEEGyGRVGMIGCTQPRRVAAMSVAKRVAEEMDVELG 358
                 68899**********998875..4444477888899999****************99864 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017      0.17      10      34 ..     291     315 ..     285     320 .. 0.90
   2 ?   -3.9   0.0       7.9   7.9e+03      45      85 ..     476     514 ..     472     523 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
                 HHHHHHHHH-SEEEEE--TTSSTTH CS
        PhoH  10 keylealkkndivfaiGpaGtGKty 34 
                 +e+l+++++n+++++iG++G+GKt 
  CCE30629.1 291 EELLRVIRENQVTIVIGETGSGKTT 315
                 678999*****************95 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7.9
                 HTTS-SEEEEEE-S--TT----SS---------TTTHHHHH CS
        PhoH  45 kkkkvkriiltrpaveageelGflpgdleekvdpylrplyd 85 
                  ++ v++++ +  +++ag+ l f+ g  +e +++ ++ +  
  CCE30629.1 476 VDQAVQQVLSIHVSMDAGDILVFMTG--QEDIEITCELVQK 514
                 56788889999999999999999999..4556655555544 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1    0.0003      0.29       2      99 ..     300     436 ..     299     451 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
      AAA_14   2 rkilvitGaRrvGKTtllkqlikell.........vkkesilyinldderd.................kkladpekllelilek..lke........ek 64 
                 +++ ++ G   +GKTt l q+++e+          ++++++  +++ +                    ++++ +e++++++ e   l +        ++
  CCE30629.1 300 NQVTIVIGETGSGKTTQLTQFLYEEGygrvgmigcTQPRRVAAMSVAKRVAeemdvelgticgyairfEDHTSKETVIKYLTEGilL-ReslnepdlDR 397
                 68999****************999988899998888888888888777555566778888887665542222333666777765432.24777899888 PP

      AAA_14  65 ktylflDEiqevpewekalkslvd....egknldvivtG 99 
                  +++++DE++e     ++l +l++    ++++l++ivt 
  CCE30629.1 398 YSCIIMDEAHERALNTDILLGLFKkilqRRRDLKLIVTS 436
                 999******998555555544444333277888888886 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00039      0.39       8      42 ..     297     332 ..     294     428 .. 0.74
   2 ?   -3.0   0.0       9.5   9.5e+03      79     120 ..     982    1030 ..     912    1033 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00039
                 EETTSEEEEEESTTSSHHHHH.HHHTTSS--SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLl.kllagllkpteGei 42 
                 ++e++++ ++Ge+G+GK+t l + l+++     G i
  CCE30629.1 297 IRENQVTIVIGETGSGKTTQLtQFLYEEGYGRVGMI 332
                 678999************955145555544455555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.5
                  H....HHHTCHHHHHHHSTTGGTTCBGESTTS...GGS-HHHHHHHHHH CS
                  x....xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
    ABC_tran   79 n....esdeeiekalsklglkelkdtvvkssp...ssLSgGqkqrvala 120 
                  +    + d   + a+++l++ +++++++ ss    +  S  + qrv la
  CCE30629.1  982 HlverWVDWTNSWAAHRLSQRDDEARPQASSNvvdEASSDNEAQRVGLA 1030
                  1444444444555556666666555555555455566677777777777 PP

>> Spc42p  Spindle pole body component Spc42p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.2   0.00058      0.57      31      66 ..     909     944 ..     907     949 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00058
      Spc42p  31 lRaKLiKYtelnkKLedqlenlersssslekkteda 66 
                  R K iK te n+K+e + + +e +  + e+k+ ++
  CCE30629.1 909 ARHKRIKETEFNRKMEIETQMAEDKRRDEERKKAEE 944
                 5999************88777777777766654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.81u 0.25s 00:00:01.06 Elapsed: 00:00:00.39
# Mc/sec: 8731.08
//
Query:       CCE30630.1  [L=541]
Description: related to WD repeat protein IEF SSP 9502 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-15   57.4  10.1     0.0091   16.8   0.1    5.8  5  WD40         WD domain, G-beta repeat
      9e-08   32.3   0.2     0.0045   17.3   0.1    4.7  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    2.9e-07   29.5   3.8    6.6e-05   21.8   1.3    3.8  3  Nup160       Nucleoporin Nup120/160
  ------ inclusion threshold ------
       0.14   11.1   0.8       0.29   10.0   0.3    1.7  2  PALB2_WD40   Partner and localizer of BRCA2 WD40 domain
       0.14   11.2   0.4       0.25   10.4   0.4    1.3  1  DUF1513      Protein of unknown function (DUF1513)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.2   0.00045       1.6      19      38 .]     207     226 ..     198     226 .. 0.91
   2 !   14.8   0.1   1.1e-05     0.039      11      38 .]     271     299 ..     265     299 .. 0.77
   3 !   15.9   0.2   5.1e-06     0.018       2      34 ..     304     338 ..     303     339 .. 0.85
   4 !   16.8   0.1   2.5e-06    0.0091       3      38 .]     398     435 ..     396     435 .. 0.77
   5 ?    1.9   0.0      0.13   4.7e+02      24      38 .]     469     482 ..     448     482 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00045
                 ETTSSEEEEEETTSEEEEEE CS
        WD40  19 spdgawlasGsdDgtvriWd 38 
                 ++ g+++a G++D+ + iWd
  CCE30630.1 207 DSKGNFVAVGTMDPDIEIWD 226
                 6789******99*******9 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.1e-05
                 SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtsla.fspdgawlasGsdDgtvriWd 38 
                 + v sla + ++ ++las+s D+tv++Wd
  CCE30630.1 271 DAVLSLAaNRQHRNLLASASADKTVKLWD 299
                 45667765556667789999********9 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 5.1e-06
                 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawla.sGsdDgtv 34 
                 qc +++t H + v+sla+++  a ++ sGs+D+t+
  CCE30630.1 304 QCAKSYTYHtDKVCSLAWHSTEATVLlSGSYDRTI 338
                 79999****555*****9999999644*******9 PP

  == domain 4  score: 16.8 bits;  conditional E-value: 2.5e-06
                 EEEEEESS.SSEEEEEEETTSSE.......EEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgaw.......lasGsdDgtvriWd 38 
                  ++tl +H  sv+s+      +        +a+Gs D+tv++W+
  CCE30630.1 398 SVWTLQAHdESVSSF------DInriipgfMATGSTDKTVKLWN 435
                 678999**7778877......44445555589***********8 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.13
                 EEEEEETTSEEEEEE CS
        WD40  24 wlasGsdDgtvriWd 38 
                 + ++Gs +g+  +Wd
  CCE30630.1 469 LAVAGS-NGNMQVWD 482
                 246899.*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.19   6.7e+02      49      69 ..     209     229 ..     207     235 .. 0.86
   2 !   17.3   0.1   1.3e-06    0.0045      47      91 ..     280     323 ..     259     324 .. 0.88
   3 ?    3.2   0.0     0.031   1.1e+02      38      70 ..     356     389 ..     348     397 .. 0.86
   4 ?   -1.3   0.0      0.79   2.8e+03      27      67 ..     397     436 ..     393     440 .. 0.70
   5 ?    3.7   0.0     0.022        78      50      79 ..     466     495 ..     450     501 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.19
  ANAPC4_WD40  49 dgklLavaysdgevrlldaes 69 
                  +g++ av++ d  +++ d  +
   CCE30630.1 209 KGNFVAVGTMDPDIEIWDLDT 229
                  79**************99876 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.3e-06
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                  ++  +lLa a +d +v+l d +++++ +s++++++k v++l W +
   CCE30630.1 280 RQHRNLLASASADKTVKLWDLKTAQCAKSYTYHTDK-VCSLAWHS 323
                  456689****************************95.******86 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.031
  ANAPC4_WD40  38 dsevrsLaWkpdg.klLavaysdgevrlldaesg 70 
                  +s v++++W p + + + v++++g ++ +d+ ++
   CCE30630.1 356 ESDVENVRWDPHDpNYFFVSTENGCIHYHDVRNA 389
                  6889*****9865489************999886 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.79
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkp.dgklLavaysdgevrllda 67 
                  + vwtl  +++d++v+s+  +     ++a +  d +v+l ++
   CCE30630.1 397 KSVWTL--QAHDESVSSFDINRiIPGFMATGSTDKTVKLWNI 436
                  678998..7888888887764314567777777777777665 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.022
  ANAPC4_WD40  50 gklLavaysdgevrlldaesgkvvhslsvk 79 
                  g  Lava s+g++++ d ++   ++++ ++
   CCE30630.1 466 GFRLAVAGSNGNMQVWDTSTNAAIRQVFAQ 495
                  557***************999999887655 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.043   1.5e+02     231     271 ..     211     249 ..     198     269 .. 0.72
   2 !   21.8   1.3   1.8e-08   6.6e-05     212     284 ..     265     333 ..     250     341 .. 0.72
   3 !    4.3   0.1    0.0035        13     233     255 ..     469     491 ..     361     525 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.043
                 TEEEEEETT-EEEEEETTTTEEEEEEE--.........-SSSTTS--SS CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclatidll........rdeeaqdesssk 271
                 +++++ + d  + +W+l+t  c++   +l                    
  CCE30630.1 211 NFVAVGTMDPDIEIWDLDTIDCMYPNAILgqggnnasE----------D 249
                 88999999999************998888666543321..........2 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 1.8e-08
                 -TT-ECEEEEET.....TTTEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEE CS
      Nup160 212 gasvalsldvavavveigqtylfalsrdgkLrvWnlltgkclatidllrdeeaqdessskstldpaesslirv 284
                 + s ++++ ++ a  + ++++l+++s d+++++W+l+t++c+ + +     +++++s ++ ++  a+  l+ +
  CCE30630.1 265 NDSYHIDAVLSLAANRQHRNLLASASADKTVKLWDLKTAQCAKSYTYH---TDKVCSLAW-HSTEATVLLSGS 333
                 333344444444444449**************************6666...599999999.777666666555 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0035
                 EEEEETT-EEEEEETTTTEEEEE CS
      Nup160 233 lfalsrdgkLrvWnlltgkclat 255
                 l+++ ++g+++vW+++t+  +++
  CCE30630.1 469 LAVAGSNGNMQVWDTSTNAAIRQ 491
                 56677899999999999988876 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   8.1e-05      0.29     300     347 ..     291     338 ..     279     341 .. 0.84
   2 ?   -2.3   0.0      0.45   1.6e+03     167     210 ..     396     440 ..     390     462 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 8.1e-05
  PALB2_WD40 300 tsGaiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsv 347
                 +  ++ +Wdl  ++c+   + ++d+  sl   s+  + ll+G  d ++
  CCE30630.1 291 ADKTVKLWDLKTAQCAKSYTYHTDKVCSLAWHSTEATVLLSGSYDRTI 338
                 55799**********999**********99888888899999999877 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.45
  PALB2_WD40 167 skekqtlmpPeetilafaeveGekdallgttv.lnniviWnlk.tG 210
                 +k+  tl++ +e++ +f  ++ +   +++t   ++ + +Wn++ tG
  CCE30630.1 396 TKSVWTLQAHDESVSSFD-INRIIPGFMATGStDKTVKLWNIQpTG 440
                 566678888888888884.566666666665504556699986355 PP

>> DUF1513  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4     7e-05      0.25     221     303 ..     275     367 ..     255     368 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7e-05
     DUF1513 221 svavdsegrlvavtsPrgnlvavwdlasgelleeaa..ladaagvaaaksg..flvssGq.gk......lvetaaeqaslkqekklssvawDnH 303
                 s a+++++r + +++   ++v +wdl++ ++ ++ +     ++ +a  +++  + + sG+ ++      +   +a+  ++ +e+++++v+wD H
  CCE30630.1 275 SLAANRQHRNLLASASADKTVKLWDLKTAQCAKSYTyhTDKVCSLAWHSTEatV-LLSGSyDRtivaadMRAPDAKAPRWGVESDVENVRWDPH 367
                 8899***************************99865114568888877766753.4444423334433233344555566677777******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3875.28
//
Query:       CCE30631.1  [L=299]
Description: uncharacterized protein CPUR_04480 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2241.13
//
Query:       CCE30632.1  [L=54]
Description: uncharacterized protein CPUR_04481 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0018   18.2   0.0     0.0022   18.0   0.0    1.2  1  HisKA     His Kinase A (phospho-acceptor) domain


Domain annotation for each model (and alignments):
>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.2e-07    0.0022       7      40 ..       8      40 ..       7      53 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.2e-07
                HHHHHHHHHHHHHHHHHHHHHHC...T-HSSCHHH CS
       HisKA  7 agvaHELrtPLsailgnaeaLkre.gklteelkey 40
                ag +H+LrtP++a +g+ + L     +    + + 
  CCE30632.1  8 AGNSHDLRTPVNATQGARDFLFSGsTP--LTVGQD 40
                6779**************999543223..333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       131  (0.0073066); expected 358.6 (0.02)
Passed bias filter:                      122  (0.00680462); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.41
# Mc/sec: 399.75
//
Query:       CCE30633.1  [L=110]
Description: uncharacterized protein CPUR_04482 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 857.01
//
Query:       CCE30634.1  [L=148]
Description: uncharacterized protein CPUR_04483 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1125.27
//
Query:       CCE30635.1  [L=588]
Description: related to PRP39-pre-mRNA splicing factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-07   29.9  10.2      0.084   13.7   0.0    7.3  9  TPR_14    Tetratricopeptide repeat
    3.1e-05   24.1   7.5    0.00029   20.9   0.3    2.8  3  Suf       Suppressor of forked protein (Suf)
  ------ inclusion threshold ------
        2.2    8.9   4.0          8    7.1   0.1    3.6  4  TPR_17    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.23   1.3e+03      19      42 ..      15      38 ..       9      40 .. 0.83
   2 ?    0.2   0.0      0.31   1.8e+03      21      43 ..      61      83 ..      57      84 .. 0.89
   3 ?    1.2   0.0      0.15   9.3e+02       4      41 ..      78     115 ..      75     118 .. 0.81
   4 ?   -2.4   0.2       2.1   1.3e+04       4      29 ..     150     175 ..     149     186 .. 0.76
   5 ?   -3.9   0.0         3   1.8e+04       5      13 ..     179     187 ..     175     191 .. 0.77
   6 !   13.7   0.0   1.4e-05     0.084       4      43 ..     281     320 ..     278     321 .. 0.96
   7 ?    4.0   0.0     0.019   1.1e+02       3      38 ..     350     385 ..     348     391 .. 0.86
   8 !    8.6   0.2   0.00061       3.6       7      33 ..     388     413 ..     382     424 .. 0.81
   9 ?    0.0   0.2      0.35   2.1e+03       3      24 ..     422     444 ..     420     446 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.23
      TPR_14 19 eAiallrralalaPddaeawllla 42
                +A++ +++ ++++Pd+ e w  + 
  CCE30635.1 15 AAVRKYEAEVEADPDNFESWENYI 38
                68888999999*****99998876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.31
      TPR_14 21 iallrralalaPddaeawlllaq 43
                +++++r l+++P    +w  +a+
  CCE30635.1 61 REAYDRFLQKFPLLFGYWKKYAD 83
                5899********99999999986 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.15
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 ++++a+ +++   p+ A+ +++r +a   ++ ++w+++
  CCE30635.1  78 WKKYADMEFNIAGPESAEMVYERGCANITNSVDLWTEY 115
                 6667777777666999*********9999999999887 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 2.1
      TPR_14   4 llalaeallalGdpdeAiallrrala 29 
                 + ++ e++++++  d+  a+  r+++
  CCE30635.1 150 WDKYIEYEERQEAQDRIYAIHARVIR 175
                 77888888888888887777776665 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 3
      TPR_14   5 lalaealla 13 
                  ++a+++++
  CCE30635.1 179 HQYARYYER 187
                 578998887 PP

  == domain 6  score: 13.7 bits;  conditional E-value: 1.4e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +++++++++  Gd+++ + l++r+l ++   +e+w+++a+
  CCE30635.1 281 WRKYLDFEESEGDFQRVVSLYDRCLVTCAFYDEFWFRYAR 320
                 999************************************8 PP

  == domain 7  score: 4.0 bits;  conditional E-value: 0.019
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeaw 38 
                  +++ a +++ +G+ d A+++  ++l + Pd  e+ 
  CCE30635.1 350 IRMQWAYFEEGSGRIDIALDIHAAILMKLPDCVEVI 385
                 67899*************************988765 PP

  == domain 8  score: 8.6 bits;  conditional E-value: 0.00061
      TPR_14   7 laeallalGdpdeAiallrralalaPd 33 
                  a++ +++ d+d+Ai++lr+  + aP+
  CCE30635.1 388 WAHLQRRQKDLDAAIQVLRDHTE-APT 413
                 688999*************9876.555 PP

  == domain 9  score: 0.0 bits;  conditional E-value: 0.35
      TPR_14   3 allalaeall.alGdpdeAiall 24 
                 + ++ a+ l+ a G  +eA+a++
  CCE30635.1 422 LVAEWAQMLWkAKGSAEEARAVF 444
                 5678899998355999***9987 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.3   4.9e-08   0.00029      40     133 ..      80     173 ..      55     213 .. 0.89
   2 !    6.9   0.3   0.00092       5.5     108     136 ..     279     307 ..     234     329 .. 0.82
   3 ?   -1.9   0.1      0.43   2.6e+03     132     132 ..     482     482 ..     434     526 .. 0.53

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.9e-08
         Suf  40 asAllEyyiskdkkvAtkIFelGlKkFpedeefvlkYldyLis.lnddnnaRvlfekvvsklskekeakelykkfleyestfgdlssilklekRm 133
                   A +E+ i+  ++ A  ++e+G  + +++ +   +Y ++ ++   d + +R lfe+  s +  +  a++ ++k++eye ++   + i+ + +R+
  CCE30635.1  80 KYADMEFNIAGPES-AEMVYERGCANITNSVDLWTEYCSFKMEtTHDPQIVRELFERGASLVGLDFLAHPFWDKYIEYEERQEAQDRIYAIHARV 173
                 5689****988888.*************************76515677889**********999999*****************99999999886 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00092
         Suf 108 elykkfleyestfgdlssilklekRmeel 136
                 + ++k+l++e   gd + +++l +R+ ++
  CCE30635.1 279 NNWRKYLDFEESEGDFQRVVSLYDRCLVT 307
                 44***********************9765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.43
         Suf 132 R 132
                 R
  CCE30635.1 482 R 482
                 2 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0013         8       2      19 ..      20      37 ..      19      40 .. 0.92
   2 ?   -1.8   0.0      0.91   5.4e+03       2      26 ..      64      88 ..      63      96 .. 0.73
   3 ?    0.7   0.0      0.15   9.1e+02       1      21 [.     300     320 ..     300     331 .. 0.87
   4 ?   -2.7   0.1       1.8   1.1e+04      20      34 .]     389     403 ..     389     403 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0013
      TPR_17  2 ylkaleldPnnadaynnL 19
                y+  +e dP+n++++ n+
  CCE30635.1 20 YEAEVEADPDNFESWENY 37
                88899**********997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.91
      TPR_17  2 ylkaleldPnnadaynnLAelllkn 26
                y ++l++ P  +  +  +A    ++
  CCE30635.1 64 YDRFLQKFPLLFGYWKKYADMEFNI 88
                999***9999888888887666555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.15
      TPR_17   1 lylkaleldPnnadaynnLAe 21 
                 ly ++l  +  + ++++ +A+
  CCE30635.1 300 LYDRCLVTCAFYDEFWFRYAR 320
                 799***************997 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.8
      TPR_17  20 AelllknGdlmtArq 34 
                 A l+++++dl+ A+q
  CCE30635.1 389 AHLQRRQKDLDAAIQ 403
                 67888999****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4375.33
//
Query:       CCE30636.1  [L=81]
Description: uncharacterized protein CPUR_04485 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00031   21.0   1.7    0.00072   19.8   1.7    1.5  1  Cornifin  Cornifin (SPRR) family
  ------ inclusion threshold ------
       0.15   12.4   0.2         12    6.3   0.1    2.2  2  EnY2      Transcription factor e(y)2


Domain annotation for each model (and alignments):
>> Cornifin  Cornifin (SPRR) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   1.7     8e-08   0.00072      27     119 ..       9      74 ..       2      80 .. 0.31

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 8e-08
    Cornifin  27 skvpepcntkvpepcqtkvpepcqtkvpepcqtkvpepcqtkvpepcytkvpepcsikvpepcfikapepcaikvpeqcltkapepcqtvvpe 119
                 skvpe  + kvp+  q  +p+  ++   + +q+                           + ++ k    +   vp++ + k pe  +  vp+
  CCE30636.1   9 SKVPESVQKKVPKDVQEAIPDQVHPTKGDGGQST--------------------------NKTHAKG-GGADSIVPQKIQEKLPESIERAVPN 74 
                 2333333333333333333332222222222211..........................1111221.1122333333333333333333333 PP

>> EnY2  Transcription factor e(y)2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0013        12      64      83 ..       7      26 ..       3      32 .. 0.71
   2 ?    4.4   0.0    0.0055        50      64      82 ..      52      70 ..      40      78 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0013
                HHHHS-HHHHHHHHHHHHHH CS
        EnY2 64 aralVPdevkkellqrIref 83
                + ++VP++v+k++ ++++e+
  CCE30636.1  7 GDSKVPESVQKKVPKDVQEA 26
                56778888888777777665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0055
                HHHHS-HHHHHHHHHHHHH CS
        EnY2 64 aralVPdevkkellqrIre 82
                a + VP++++++l + I+ 
  CCE30636.1 52 ADSIVPQKIQEKLPESIER 70
                4556677777776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 608.48
//
Query:       CCE30637.1  [L=1332]
Description: related to phosphatidylinositol phosphate phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-73  246.5   0.0    6.2e-73  245.9   0.0    1.3  1  Syja_N         SacI homology domain
    1.6e-08   34.4   0.0    3.1e-08   33.4   0.0    1.5  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Syja_N  SacI homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.9   0.0   6.9e-77   6.2e-73       1     320 []      83     429 ..      83     429 .. 0.83

  Alignments for each domain:
  == domain 1  score: 245.9 bits;  conditional E-value: 6.9e-77
      Syja_N   1 ygilGlirllsgsyllvitkreevgtlkgkkeiykitevellplsseeeaekalkslkakt..........ekkkeeke...........leekllkll 78 
                 yg lGli  + + +l vit++ + +t++ ++++ ki+ v++++lss++ ++     l +++          +      +             e+ +++l
  CCE30637.1  83 YGTLGLIAANGEVFLSVITRAIRAATVRPGETVEKISTVDFYCLSSADYDDV--VPLDEADfsdasstlsgQ------SgygqslgrrevSVEHPCREL 173
                 799*****9999**************99889*************75522222..222222233444444440......144455555555455578888 PP

      Syja_N  79 eklfessgsfYFsydlDltrslqrqlekssesskslplweraderFvWNrhllkpli.........ea...eldswllpviqGfveqsklkls.....k 160
                  + + s+gsfY+s d+Dlt++lq+++ +s +s++     +++d+ ++WN+++++pl+         e+   + +++l++  +Gf+++++++++     +
  CCE30637.1 174 -RKLLSNGSFYYSTDFDLTNRLQDRSINS-NSFDI----DNFDDTYLWNSFMIRPLVefrsrlmppERealDSSRILTSATRGFCKTMTIPQNaspirQ 266
                 .55559*******************9974.44444....479*************8866666666622668899************9999988877654 PP

      Syja_N 161 sqkekekkevtltlisRrsrkraGtRylrRGiddeGnvANfvEtEqilevessekeskilSfvqiRGSiPlfWsqeptlky.kpkirierseeenleaf 258
                 s k+ ++   ++ lisR s++raGtR+++RGidd+GnvANfvEtE+i+ +    + + ++S+vq+RGS+P+fW+q  +l   ++ki+++rs+e +++af
  CCE30637.1 267 SRKNGNGMPSYFSLISRLSCRRAGTRFNSRGIDDDGNVANFVETETIFCS----PAGTLFSYVQVRGSVPVFWEQAADLLPgRQKITVTRSKEGTQPAF 361
                 45558888999**************************************4....6789*******************98878***************** PP

      Syja_N 259 kkHfekllkrYgkvvvvnLl.ekkgrEkkLgeayekavkklnk.le....kekkklkyveFDfhkeck 320
                 +kH+e+l + Yg+v+++nLl ++k+ E +L++ y++a++++   ++     e+  lk +++Dfh+e+k
  CCE30637.1 362 DKHIEDLEQIYGAVHIINLLsDTKPAEVELSDLYRHAIHRCPYsQSesssAEHALLKETHYDFHAETK 429
                 ********************9999****************9874448998888999*********987 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   3.4e-12   3.1e-08       1     233 []     631     919 ..     631     919 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 3.4e-12
                    EEEEESTG....CHHHHTHHHHHHHHHHHHHHCTT............SEEEEEEEBSCTCHHHHHHHHH.......................TTCE CS
                    xxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxx.......................xxxx RF
  Exo_endo_phos   1 ltwNvngq....aspalgssrrsdrladlltayda............DvlgLQEvdddelsriplllal.......................ggfl 57 
                    +t+N+ng               +d l  +l    a            +++++QE+   + +       +                           
     CCE30637.1 631 GTFNLNGRtdgiD---------HD-LSPWLFGASAgsstggveqpdiYAVAFQEIVELSPQ-------QimnsdpsrkhmweeavkralnqrQ--- 706
                    699****543332.........33.88888444337777777777889******5555544.......4433444476666666655555551... PP

                    EEEECCH.........................................ECSSSTTSSEEEEEECSTE..EEEEEEEEEETSSSSGCEEEEEEEEEE CS
                    xxxxxxx.........................................xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  58 gasstsp.........................................tgggggggnggavlsrfpl..tslfrrtfiefndlvaalrreplaakl 110
                                                                    tg  +  gn+gav++rf    t++                        
     CCE30637.1 707 ------AslageryvllrsgqlvgaalcifvktsrlkhiknvegsvkkTGLSNMAGNKGAVAIRFDYanTHI------------------------ 772
                    ......04455555556666677777888888888888999999999********************99999........................ PP

                    EEEEECCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEE.........................................EEE-SSSTSGGGBSCG CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................................xxxxxxxxxxxxxxxx RF
  Exo_endo_phos 111 eqlniashrdhdlvrdlqllalllqvealnadrgapviv.........................................aGDfNarpsdddsrvl 165
                                                        ++v                                         +GDfN+          
     CCE30637.1 773 ------------------------------------CFVtahlaagfsnyeernrdyatihhglrfqrnrgiedhdailwMGDFNY---------- 822
                    ....................................99999999999999999999999999999999999999999999******.......... PP

                    HHHHHHCTTTHHSSCESCETTTTTTTTTTTEB-B.............................................................. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................................. RF
  Exo_endo_phos 166 rtrglalapapvglyllgggptptyvtraggsrl.............................................................. 199
                                                    r+                                                              
     CCE30637.1 823 --------------------------------RIglgletakalvnkrdlaslyendqlnlqmvaglafpfysearigfmptykfdvgtdnydsse 886
                    ................................**************************************************************** PP

                    ........EEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 200 ........DrilaspalalfrsgvlppplalvrrealtlSDH 233
                            Dril +++  ++ s+            +l +SDH
     CCE30637.1 887 karipawtDRILRKGSILRQLSYDSA---------PLRFSDH 919
                    **************655555444444.........5568**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.48
# Mc/sec: 8325.62
//
Query:       CCE30638.1  [L=150]
Description: uncharacterized protein CPUR_04487 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1123.16
//
Query:       CCE30639.1  [L=280]
Description: probable 14-3-3-like protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-106  353.9   0.7   3.4e-106  353.7   0.7    1.0  1  14-3-3    14-3-3 protein


Domain annotation for each model (and alignments):
>> 14-3-3  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.7   0.7  1.9e-110  3.4e-106       1     222 []      11     233 ..      11     233 .. 0.99

  Alignments for each domain:
  == domain 1  score: 353.7 bits;  conditional E-value: 1.9e-110
                 HHHHHHHCCHHHHHHHHHCHHHHCSS---HCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCTCC.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
      14-3-3   1 laklaeqaeryddmveymkkvvelkeeLskeernlLsvayKnvvgarRaswrvlssieqkeeske.ekkvelikeyrekiekeLkeiceevlelldktl 98 
                 la+l+eqaeryd+mv+ymk+v++l+ eL+++ernlLsvayKnvvg+rRaswr++ssieqkeesk+ +k++ +ikeyr+kie eL+++ce+vl++ld+ l
  CCE30639.1  11 LARLCEQAERYDEMVTYMKEVAKLGGELTVDERNLLSVAYKNVVGTRRASWRIISSIEQKEESKGsDKHLPTIKEYRSKIELELEKVCEDVLNVLDEAL 109
                 69***************************************************************9999****************************** PP

                 HCH.-SHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHTTTGCC-HHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHCCHCCCC CS
      14-3-3  99 ipkatseeskvfylkmkgDyyRYlaEfaegeekkeaaekakeaYeeAleiakkelqpthpirLglaLNySVflyeilnspekAcelakkafdeaiaeld 197
                 ip+a s eskvfy+kmkgDy+RYlaEfa+ge++k aa++a+eaY++A+++a+++l+pthpirLglaLN+SVf+yeilnsp++Ac+lak+afd+aiaeld
  CCE30639.1 110 IPNAASGESKVFYHKMKGDYHRYLAEFASGEKRKGAATAAHEAYKNATDVAQTDLTPTHPIRLGLALNFSVFYYEILNSPDRACHLAKQAFDDAIAELD 208
                 **9************************************************************************************************ PP

                 CS.TTTHHHHHHHHHHHHHHHHHHC CS
      14-3-3 198 elseesykdstlilqlLrdnltlWt 222
                 +lseesy+dstli+qlLrdnltlWt
  CCE30639.1 209 SLSEESYRDSTLIMQLLRDNLTLWT 233
                 ************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2116.63
//
Query:       CCE30640.1  [L=380]
Description: related to triacylglycerol lipase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-32  110.2   0.0    1.1e-31  109.6   0.0    1.3  1  Lipase_3       Lipase (class 3)
     0.0011   19.6   0.3     0.0015   19.1   0.3    1.4  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.013   15.1   0.0       0.27   10.8   0.0    2.1  2  DUF2974        Protein of unknown function (DUF2974)
      0.014   14.7   0.0      0.024   13.9   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
      0.032   13.9   0.0      0.054   13.1   0.0    1.3  1  Esterase       Putative esterase
      0.098   12.4   0.0       0.15   11.7   0.0    1.2  1  PGAP1          PGAP1-like protein


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.0   3.6e-35   1.1e-31       2     140 ..     101     268 ..     100     270 .. 0.93

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 3.6e-35
                 EEE----------------EEE-HHHH-G.......................TT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHH CS
    Lipase_3   2 vafRGtesakdwltdldfslteakellek.......................eggkvhsgfleayeeslreqvlkelkrllekypeysivvtGHSLGga 77 
                 vafRGt s+++++ dl + ++++ + +                         ++++vh+gfl++++  +r++vl++lk l+ +yp+y++ ++GHSLGga
  CCE30640.1 101 VAFRGTYSITNTIVDLSTVPQKYVPYPAPgdddndddndeqqeeahaqgpkcDNCTVHMGFLQSWQ-LARDTVLPKLKALKMEYPSYQVQLVGHSLGGA 198
                 89********************9998666999**********************************.******************************** PP

                 HHHHHHHHHHHTT-SS---EEEEEES----B-HHHHHHHHT-TTE.........EEEEEEETT--GGG-S-S CS
    Lipase_3  78 lAlLaaldlvengenekkkvtvvtfGqPrvgnkefaklvdsqlnk.........kvlrvvntnDivPrlppl 140
                 +A+Laal+l+       +++ v tfG+Pr gn+++a+++d  ++           + rv+++nD+vP lp  
  CCE30640.1 199 VACLAALELKLSLGW--DDLLVTTFGEPRLGNYHLARYIDTAFSLddtahperrSYRRVTHNNDPVPLLPLE 268
                 **********99966..9**********************66665666666777899************975 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   5.1e-07    0.0015      62     159 ..     178     285 ..     126     367 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.1e-07
                    .......TTSEEEEEETCHHHHHHHHHHCC.............EEEEES-..----TTT.S----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHH. CS
  Abhydrolase_6  62 a.....gggpvvlvGHSlGGalalaaapla...........lvvgvlldppptalpagl.laaalelllallallrllawlsreplprlfladed. 139
                    a        +v lvGHSlGGa+a++   +a           l    l+ +   ++ ++l    ++++++++ + l + a + r++++r  +++++ 
     CCE30640.1 178 AlkmeyPSYQVQLVGHSLGGAVACL---AAlelklslgwddL----LVTT---FGEPRLgNYHLARYIDTAFS-LDDTAHPERRSYRRVTHNNDPv 262
                    455555566788*************...66655755554432....4444...33333322222222222222.2222333333333333333332 PP

                    ...CCCCHCHCCCGHHHHCCHHC CS
  Abhydrolase_6 140 ...adaawrarlarlaallaglg 159
                       + ++w++r  ++  + a+ +
     CCE30640.1 263 pllPLEEWGYRSHAGEVYIAKQD 285
                    22224666666665554444443 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.039   1.2e+02      35      47 ..      95     107 ..      85     115 .. 0.83
   2 ?   10.8   0.0   9.1e-05      0.27      75     108 ..     176     210 ..     157     257 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.039
     DUF2974  35 eedtlvvaFRGTd 47 
                 +e++++vaFRGT 
  CCE30640.1  95 KEGSILVAFRGTY 107
                 6899********4 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 9.1e-05
     DUF2974  75 lnkileeseg.kiylgGhSkGGnlAvyaamnaedd 108
                 l+ +  e++  ++ l+GhS GG +A +aa++++ +
  CCE30640.1 176 LKALKMEYPSyQVQLVGHSLGGAVACLAALELKLS 210
                 55556666663599***************987655 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   8.1e-06     0.024      51      96 ..     161     206 ..     148     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.1e-06
  Hydrolase_4  51 hvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllr 96 
                   ++s++   d +   ++++k e+p  ++ l+GhS+GG++a+l++l+
   CCE30640.1 161 FLQSWQLARDTVLPKLKALKMEYPSYQVQLVGHSLGGAVACLAALE 206
                  556666666666666788999********************99865 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.8e-05     0.054      95     135 ..     165     206 ..     110     208 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
                 CHHHHTHHHHHHHHHCSEECCC.EEEEEETHHHHHHHHHHHC CS
    Esterase  95 etfltqeLlplldanfrtapdg.ravaGqSmGGlgALilalk 135
                 ++  ++++lp l+a +  +p++   ++G+S+GG +A ++al+
  CCE30640.1 165 WQLARDTVLPKLKALKMEYPSYqVQLVGHSLGGAVACLAALE 206
                 3666789999999999999999999*************9996 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.1e-05      0.15      89     109 ..     184     204 ..     172     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.1e-05
       PGAP1  89 eptsviliGHSmGGivaraal 109
                 +  +v l+GHS+GG va +a+
  CCE30640.1 184 PSYQVQLVGHSLGGAVACLAA 204
                 56689************7654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2854.05
//
Query:       CCE30641.1  [L=174]
Description: uncharacterized protein CPUR_04490 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.25   11.1   0.0    1.5  1  AlgF      Alginate O-acetyl transferase AlgF


Domain annotation for each model (and alignments):
>> AlgF  Alginate O-acetyl transferase AlgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.4e-05      0.25      48     103 ..     103     154 ..      90     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.4e-05
        AlgF  48 tklksvsplqssdfkflpaGkyqaqvgnkqlpvelkadsyytlvsqdgaslllvee 103
                 t +++v p + + +++ ++G+  + v+ ++ + +l+++sy+   ++ +    lv+ 
  CCE30641.1 103 TMVQNVCPDAKGKYEYAASGNVFIPVNCASGKCHLNTHSYNGTFTKMA----LVQH 154
                 6789*********************************99987665554....4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1412.96
//
Query:       CCE30642.1  [L=348]
Description: probable CDC21-thymidylate synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.5e-105  351.5   0.0   2.9e-105  351.2   0.0    1.0  1  Thymidylat_synt  Thymidylate synthase


Domain annotation for each model (and alignments):
>> Thymidylat_synt  Thymidylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.2   0.0  1.6e-109  2.9e-105       2     268 .]      25     348 .]      24     348 .] 0.93

  Alignments for each domain:
  == domain 1  score: 351.2 bits;  conditional E-value: 1.6e-109
                      HHHHHHHHHHHH-EEEE-TTSSEEEEEEE.EEEEEEGGG...CB----SSST--HHHHHHHHHHHHTT--BTHHHHTTT--TTH.....HHHHH CS
  Thymidylat_synt   2 qYldlvrkileeGeekedRtgtgtisvfg.aqlrfdlse...gefPllTtkkvflksvieEllWflsgetnvkeLqekgvkiWd.....ewade 86 
                      qYldl+r+il+eGe ++dRtgtgtis+f+ + l+f l++     +PllTtk+vfl++vi+EllWf++g+t+   L++ gvkiWd     e++d+
       CCE30642.1  25 QYLDLIREILDEGEVRPDRTGTGTISIFApRPLKFFLNRdgvPILPLLTTKRVFLRAVIAELLWFIEGNTSSLALSNAGVKIWDgngsrEFLDN 118
                      9****************************999*****9955545899*************************************7777744433 PP

                      T.......TB-SSSHHHHHHHBTST........TTSSB-HHHHHHHHHHHSTT-ST-EEE---GGGGGGSSS--SEEEEEEEE..SEE...... CS
  Thymidylat_synt  87 e.......gdlgpvYGkqwrkfkae........egkkidqlakvidqlkenpdsRriivsawnpaeldkmaLppChvlfqfyvkdkke...... 159
                              gdlgpvYG+qwr+f+ae        +gk++dqla+vid++k++p++Rrii+sawn ++l+ maLppChv++qfyv+   +      
       CCE30642.1 119 LglthrevGDLGPVYGFQWRHFGAEyvdaktdySGKGVDQLADVIDKIKNKPYDRRIIMSAWNARDLHLMALPPCHVFAQFYVSYPGRrrrngr 212
                      345555559*************9999*****999*********************************77**************84433689*** PP

                      ...........................TEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT-EEEEEEEEEEEEEEEGGGHHHHHHHHTS- CS
  Thymidylat_synt 160 ...........................gkLslqlyqRSaDvflGvpFNiasyalLthmlaqvtglkpgelihtigdaHiYsnhveqvkeqlere 226
                                                 g+L++qlyqRS+D++lGvpFNiasyalLthm+a+ ++l pg+l+h++gdaH+Y +h ++++ qlere
       CCE30642.1 213 vqksdasasasangsaekeadennnekGHLNCQLYQRSCDMGLGVPFNIASYALLTHMIAHACDLVPGSLTHVMGDAHVYADHEDALNVQLERE 306
                      *************************9999***************************************************************** PP

                      --S--EEEE--SSTHSGGG--GGGEEEES----SXXXXXXX. CS
  Thymidylat_synt 227 prelpklelnkekkvsiedfeledfelenYkphpkikakvav 268
                      pr++p+le++++k  si+ +++edf++++Y+ph++i++k++v
       CCE30642.1 307 PRDFPELEITRDKGCSIDGWKIEDFVVKGYDPHKTIAMKMSV 348
                      *********866655*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2585.09
//
Query:       CCE30643.1  [L=105]
Description: probable 60S ribosomal protein L36 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-41  140.8   7.8    1.4e-41  140.7   7.8    1.0  1  Ribosomal_L36e   Ribosomal protein L36e
  ------ inclusion threshold ------
      0.024   14.8   1.7      0.024   14.8   1.7    1.3  1  MRP-L28          Mitochondrial ribosomal protein L28
      0.049   13.7   0.5      0.061   13.4   0.5    1.1  1  PBS_linker_poly  Phycobilisome Linker polypeptide
      0.085   11.6   0.1      0.088   11.6   0.1    1.0  1  DUF2207          Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> Ribosomal_L36e  Ribosomal protein L36e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   7.8   3.1e-45   1.4e-41       2      96 .]       9     103 ..       8     103 .. 0.98

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 3.1e-45
  Ribosomal_L36e   2 sglavglnkGhkvtknvsklrpsrrkgrltkrtkfvrdiirevaGfapyerrvmellkvskdKralKfaKkrlgthirakrKreelsnvlaamrk 96 
                     +gl+vgln+Ghk+t++v k+r sr+kg+l+krt+fvr++++evaG+apyerrv+ell++skdKra+K+aKkrlgt+ rak+K++el++v+a++r+
      CCE30643.1   9 TGLTVGLNRGHKTTSRVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRARKLAKKRLGTFGRAKKKVDELQRVIAESRR 103
                     799*****************************************************************************************996 PP

>> MRP-L28  Mitochondrial ribosomal protein L28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   1.7   5.3e-06     0.024       6      67 ..      15      78 ..      11      86 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.3e-06
                XXXXXXXXX....XXXXXXXXXXXXX...XXXXXXXXXXXXXXXSXSXXTTSSTTX..XSXXXXX CS
     MRP-L28  6 lkkkkkvdpqvvkrreerakkrlekq...irkleksakelkPveelivplksvdsakrrqrklle 67
                l++ +k++ +vvk r +r k +l+k+   +r   k+  +l P e+++++l   +s+++r+rkl +
  CCE30643.1 15 LNRGHKTTSRVVKPRVSRTKGHLSKRtafVREVVKEVAGLAPYERRVIELLR-NSKDKRARKLAK 78
                567889999999998888888777643449******************9865.566699999876 PP

>> PBS_linker_poly  Phycobilisome Linker polypeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.5   1.4e-05     0.061      27      92 ..      28      98 ..      19     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
                     CSTHHHHHHHHTTSS-HHHHHHHHHCSHHHHHHHTTTS-H...HHHHHHHHHHH..TSS--SSHHHHHHHH CS
  PBS_linker_poly 27 erlselesklkngeisvrefvralakSelYrkrfyeklsn...yrvielafkhl..LGRapesqaEiskys 92
                      r s++  +l++++  vre v+++a    Y++r++e l n    r+ +la k+l   GRa ++ +E+++++
       CCE30643.1 28 PRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNskdKRARKLAKKRLgtFGRAKKKVDELQRVI 98
                     477788889999*********************99866551115788899999877899999999998765 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     2e-05     0.088     305     354 ..      44      95 ..      17     104 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2e-05
     DUF2207 305 ltilkkndeeldpyEkalldlLfdkseeg.ks..lkeikkyakkskkkakkfk 354
                 ++ ++k+ + l+pyE+++++lL + ++++  +  +k+++++ + +k k ++++
  CCE30643.1  44 VREVVKEVAGLAPYERRVIELLRNSKDKRaRKlaKKRLGTFGRAKK-KVDELQ 95 
                 4677888999************966666655577666777766666.444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 803.49
//
Query:       CCE30644.1  [L=510]
Description: uncharacterized protein CPUR_04493 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-25   87.9   0.2      7e-24   83.8   0.0    2.4  2  TUG-UBL1  TUG ubiquitin-like domain
    0.00071   19.6   0.1     0.0019   18.2   0.1    1.7  1  RBD       Raf-like Ras-binding domain
      0.004   17.1   0.0     0.0094   15.9   0.0    1.6  1  DUF4294   Domain of unknown function (DUF4294)


Domain annotation for each model (and alignments):
>> TUG-UBL1  TUG ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   1.2e-27     7e-24       2      65 .]       9      71 ..       8      71 .. 0.96
   2 ?    1.4   0.0     0.062   3.7e+02      22      49 ..     388     416 ..     385     429 .. 0.74

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 1.2e-27
    TUG-UBL1  2 tynfrrfkvkvtpnttlndvLeeackkfklddsasytLkhnnkpldlslpfRlsnLpngakLeL 65
                  + rr++vkvtp+t+l dvL++ackk++l +s++y +kh+++++dls+pfR s+L  gakLeL
  CCE30644.1  9 AADLRRTTVKVTPGTYLADVLDQACKKLNL-SSDKYLFKHKQRQVDLSVPFRTSGLIGGAKLEL 71
                5689**************************.888*****************************9 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.062
    TUG-UBL1  22 LeeackkfklddsasytLk.hnnkpldls 49 
                 L ea+++   d+s+++ L+  ++k l  +
  CCE30644.1 388 LYEAVRHVMADPSQKFHLLlSGSKILIQD 416
                 679*******7778777775888888444 PP

>> RBD  Raf-like Ras-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   3.2e-07    0.0019      10      47 ..      13      50 ..       5      61 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.2e-07
         RBD 10 qrtvvevkpgetvrdaLekalkkRglnpsacaVylkgs 47
                +rt+v+v pg  + d+L++a+kk +l+ +++    k++
  CCE30644.1 13 RRTTVKVTPGTYLADVLDQACKKLNLSSDKYLFKHKQR 50
                79************************998887777765 PP

>> DUF4294  Domain of unknown function (DUF4294)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.6e-06    0.0094      77     119 ..     162     204 ..     153     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-06
     DUF4294  77 kkefekeLkkLtrsqGkiLikLidRetgqtsYelikelrggfk 119
                 ++ f++ L +L ++ G++Li+L  R t+qt +e ++++  +f+
  CCE30644.1 162 FEDFQRTLAQLGHNSGNVLIRLGFRRTEQTLFEALQQISQSFE 204
                 689********************************99988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3357.69
//
Query:       CCE30645.1  [L=191]
Description: probable 20S proteasome subunit beta3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-38  130.9   0.0    4.2e-38  130.7   0.0    1.0  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   0.0   2.3e-42   4.2e-38      10     190 .]       1     176 [.       1     176 [. 0.97

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 2.3e-42
                 EEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTTTTTSEEE CS
  Proteasome  10 ikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgrrpfgvsl 108
                 + gkd+v++a+d r+  ++ ++s++ + K+f+    ++++++Gla D++t+++ +r+++++yrlr++r i ++     +a+++++ +++++++p+ vs 
  CCE30645.1   1 MVGKDCVAIACDLRLGLQALTVSNN-FPKVFQY-GDVFLGLTGLATDVNTVADLLRYKVNMYRLREERAIAPR----TFANLVSSSLYERRFGPYFVSP 93 
                 579*************999996666.9*****8.569************************************....********************** PP

                 EEEEEE.TTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 109 liagvd.eeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                 ++ag+d ++g+p+++ +d +G++   kd+++ G++se   +++e ++++d+  +e++e++ +al +a++rd+lsg++++v++i
  CCE30645.1  94 VVAGLDpKTGKPFICGFDSIGCMDHAKDFIVSGTASEQLFGMCEGLWEPDMGPDELFETISQALLNAVDRDALSGWGAHVYII 176
                 ******999************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1339.06
//
Query:       CCE30646.1  [L=1002]
Description: probable calcium P-type ATPase NCA-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-49  165.6   1.0    8.2e-49  165.6   1.0    2.5  3  E1-E2_ATPase     E1-E2 ATPase
    1.6e-46  158.3   4.9    1.6e-46  158.3   4.9    1.6  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    1.3e-21   77.8   0.2      6e-21   75.7   0.2    2.1  1  Hydrolase        haloacid dehalogenase-like hydrolase
    2.2e-20   72.1   0.0    5.7e-20   70.8   0.0    1.7  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    8.1e-20   70.7   0.0    1.5e-19   69.9   0.0    1.4  1  Cation_ATPase    Cation transport ATPase (P-type)
    1.1e-07   31.9   1.4    4.8e-06   26.5   0.7    2.6  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
    0.00012   22.6   0.0    0.00044   20.7   0.0    1.9  2  HAD              haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.45   1.1e+03     113     157 ..      52      96 ..      42      99 .. 0.78
   2 !  165.6   1.0   3.2e-52   8.2e-49       3     181 .]     122     327 ..     120     327 .. 0.96
   3 ?   -5.7   2.0         7   1.8e+04     130     161 ..     931     966 ..     911     968 .. 0.48

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.45
                   HHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHH CS
  E1-E2_ATPase 113 kkldklgkvlvpvvlliallvflialllgkslaeallralallva 157
                    +l+++  +lv++ l  a++ f +al+  ++ + a++   ++l++
    CCE30646.1  52 LILEQFKDQLVIILLGSAAVSFGLALFEDEGGWSAFVDPAVILTI 96 
                   5678899999*****************999999888884444444 PP

  == domain 2  score: 165.6 bits;  conditional E-value: 3.2e-52
                   S--EEEEE.-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S...EEE-TTTS---S-EE-..............G-TTEE-TT-EEEE-EE CS
  E1-E2_ATPase   3 lpptakvi.rdgteeeidakelvpGDivllkagdrvpaDgrivegsa...evdesaLTGEslpvek..............ekgdmvfsGtvvvsgea 81 
                   ++++++vi ++g + +++a++lvpGDiv +  gdr+paD+r++  ++    vd+++LTGEs+ v k              ++ +m+fsGt+vv g+a
    CCE30646.1 122 SANESNVIrNNGHISRVKAEDLVPGDIVTVSVGDRIPADCRVIAIESnsfAVDQAILTGESESVGKddemvvqddrcvlqDQVNMLFSGTTVVTGRA 218
                   6788899967889999**************************97555559*****************************99**************** PP

                   EEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.........HHHHHHHHHHHHHS-TTHHHHHHH CS
  E1-E2_ATPase  82 kavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.........eallralallvaaiPcaLplavpl 169
                   +avV  tg++t +g i +++ ++ s+ tpl++kl+ +g  l++v+++i++lv+li++ +++++          ++l  a++l vaaiP++L++++++
    CCE30646.1 219 RAVVALTGSSTAIGDIHESITAQISEPTPLKQKLNDFGDNLAKVITVICILVWLINIPNFNDPShgswakgaiYYLKIAVSLGVAAIPEGLAVVITT 315
                   ***************************************************************9*******9889999******************* PP

                   HHHHHHHHHHHT CS
  E1-E2_ATPase 170 alalgarrlakk 181
                   +lalg+r++a k
    CCE30646.1 316 CLALGTRKMAAK 327
                   *********975 PP

  == domain 3  score: -5.7 bits;  conditional E-value: 7
                   HHHHHHS-STTTSSTT....HHHHHHHHHHHHHS-T CS
  E1-E2_ATPase 130 allvflialllgksla....eallralallvaaiPc 161
                   al + l+ + + ++l+      +++  a++v++ P 
    CCE30646.1 931 ALHFGLLYIPVLQGLFaivpLNVTEWTAVVVISAPV 966
                   222222222222222234556666677777777775 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       4.6   1.2e+04      61      78 ..     263     280 ..     261     299 .. 0.64
   2 !  158.3   4.9   6.1e-50   1.6e-46       1     182 []     773     976 ..     773     976 .. 0.92

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 4.6
  Cation_ATPase_C  61 qalvtllvffltlllfgi 78 
                      ++++++lv+++++  f+ 
       CCE30646.1 263 ITVICILVWLINIPNFND 280
                      566666666666654443 PP

  == domain 2  score: 158.3 bits;  conditional E-value: 6.1e-50
  Cation_ATPase_C   1 plplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenkls........ 86 
                      p +l ++q+Lw+nLvtD+lpa+aL+++pp+ dim+r+Prk++epli + +++r li+g++++l+t++ +++++  ++ + ++   +        
       CCE30646.1 773 PEALIPVQLLWVNLVTDGLPATALSFNPPDHDIMRRQPRKRDEPLIGGWLFLRYLIIGTYVGLATVAGYAWWFM-YNPQGPQITFKqlsrfhhc 865
                      67899****************************************************************87777.4333333222256677778 PP

  Cation_ATPase_C  87 ................snyaqtmaFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewli 164
                                       ++++t+ + +lv++++fna+n+ s++esl++   l++n++l++ai+ls++l++ ++y+p+l+ +f ++pl+++ew+ 
       CCE30646.1 866 tadfpeigcgmfsndmAKAGSTVSLSILVVIEMFNAMNALSSSESLLS-LPLWKNMMLVYAIALSMALHFGLLYIPVLQGLFAIVPLNVTEWTA 958
                      8888888888998888899*****************************.********************************************* PP

  Cation_ATPase_C 165 alllalvvllvdelvKll 182
                      ++++++ v+l+de++Kl+
       CCE30646.1 959 VVVISAPVILLDEILKLI 976
                      ****************97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.2   2.4e-24     6e-21       3     210 .]     345     704 ..     343     704 .. 0.79

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 2.4e-24
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTE.HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrg.ayaigkpewltaldippdlgaaigsaqsqgrtv 100
                 +++ Dk+GTLtt ++sv +++  +                     +a  ++++   + +tf  rg  +a gkp    a   ++d   ++++  +   ++
  CCE30646.1 345 VICSDKTGTLTTNQMSVNKIVYLN---------------------EAGSDLTELDIEGTTFSPRGsIFANGKPVVDIAS--SSDTVRQMTEVAAICNDA 420
                 7999********************.....................6666664444444444446665555555555555..333333333333333333 PP

                 HHH................................................................................................ CS
                 xxx................................................................................................ RF
   Hydrolase 101 all................................................................................................ 103
                 +l                                                                                                 
  CCE30646.1 421 YLAydtrsatfsnvgeptegalrvlvekvgpcpsentppedcvhhashhyekqlprlatyefsrdrksmsvlvqngkqkkllvkgapesiiercthtli 519
                 33355555555555666666666666677777777777777777777777777777777788888888888888888888889**************** PP

                 ...........................................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESS CS
                 ...........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 ...........................................................qaralavftiadplkvkpeaaeavasLkaagievvlltgd 143
                                                                            +   l+++ + dp  +++e+   +++ k+agi+v+++tgd
  CCE30646.1 520 gangkrvalsekltgllmkevvdygnrglriiglasiddvsnnpllsaksteqyaqleqNMTFLGLVGMLDP--PRKEVPGSIEKCKEAGIRVIVITGD 616
                 *********************************************************9999***********..************************* PP

                 EHHHHHHHHHHTT.....GGGE.SEEEEHHCES...............STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxx.....xxxx.xxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 144 npetaeraanqlG.....ddyf.daviasdiet...............vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 n++tae++ +q+G     +d   +   +++ e                ++ ++p +k ++++ Lq  +e vam GDgvnDa+al++A+
  CCE30646.1 617 NRNTAESICRQIGvfgadEDLTsKSYTGREFENlspseqleaakraslFSRVEPGHKSKLVDLLQSLGEVVAMTGDGVNDAPALKKAD 704
                 *************999973333233333333336666777788888888999*************88888****************98 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   2.2e-23   5.7e-20       5      69 .]       8      72 ..       5      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 2.2e-23
  Cation_ATPase_N  5 sleevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69
                     ++ +vl ++++d++nGL++++++e++ kyG+N+++e+++++lw+++l+qf++ lvi+Ll +a+vs
       CCE30646.1  8 PIATVLSHFGVDEQNGLSDKQVEELRNKYGRNAIPEEPPTPLWELILEQFKDQLVIILLGSAAVS 72
                     67899**********************************************************98 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   5.7e-23   1.5e-19       2      91 .]     416     517 ..     415     517 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 5.7e-23
  Cation_ATPase   2 lcNsaafsensekdevkllGnktEsALlvlaekl..............gldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApei 83 
                    +cN+a + ++   ++++ +G++tE AL vl+ek+              +   + ++++ +++++++F+++rK+msv++++   k+  l+vKGApe+
     CCE30646.1 416 ICNDAYLAYDTRSATFSNVGEPTEGALRVLVEKVgpcpsentppedcvHHASHHYEKQLPRLATYEFSRDRKSMSVLVQN--GKQKKLLVKGAPES 509
                    8*******************************************999999999999***********************5..6************* PP

  Cation_ATPase  84 ilkrCthv 91 
                    i++rCth+
     CCE30646.1 510 IIERCTHT 517
                    ******96 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.024        62      23      53 ..     599     629 ..     592     633 .. 0.90
   2 !   26.5   0.7   1.9e-09   4.8e-06     201     247 ..     682     728 ..     674     736 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.024
                  HHHHHHHTTSEEEEE-SS-HHHHHHHHHHCC CS
  Hydrolase_3  23 aikklkekgikvviATGRslravlpvleelg 53 
                   i+k+ke+gi v++ TG +  +++++ +++g
   CCE30646.1 599 SIEKCKEAGIRVIVITGDNRNTAESICRQIG 629
                  699****************999999999887 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.9e-09
                  --GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GG CS
  Hydrolase_3 201 isleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnn 247
                     e v+  GDg ND + L++a++gvAmg++++  k aAd+v ++ n
   CCE30646.1 682 SLGEVVAMTGDGVNDAPALKKADIGVAMGSGTDVSKLAADMVLADSN 728
                  455667778*********************************99887 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.7e-07   0.00044      94     188 .]     600     701 ..     573     701 .. 0.69
   2 ?   -2.4   0.0       2.1   5.5e+03     103     128 ..     750     777 ..     730     790 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.7e-07
         HAD  94 laahraaGdrvvvvSgglrplvepllaelgadevlatelevdd....rltgelglegkpvrgegkvaalrewlaaegegidlee..........vvay. 177
                 ++++++aG+rv+v++g +r  +e ++++ g   v +     +d     +tg+ +   +p+ + + +++     + + e+ + ++          vva  
  CCE30646.1 600 IEKCKEAGIRVIVITGDNRNTAESICRQIG---VFGA---DEDltskSYTGREFENLSPSEQLEAAKRASL--FSRVEPGHKSKlvdllqslgeVVAMt 690
                 45556**********************999...5555...1112333999995555555555444433333..33333333333344666777789989 PP

         HAD 178 GDspsDlpllr 188
                 GD+++D p+l+
  CCE30646.1 691 GDGVNDAPALK 701
                 ********996 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.1
         HAD 103 rvvvvSgglrplvepll.aelg.adevl 128
                   +++S+++ ++v ++l a+lg +++++
  CCE30646.1 750 IRYLISSNIGEVVSIFLtAALGmPEALI 777
                 55899************99999766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1002 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 6677.41
//
Query:       CCE30647.1  [L=230]
Description: uncharacterized protein CPUR_04496 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-14   53.4   0.0    5.8e-14   52.7   0.0    1.4  1  RhoGEF    RhoGEF domain


Domain annotation for each model (and alignments):
>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   3.2e-18   5.8e-14      39     162 ..      20     195 ..       3     217 .. 0.76

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 3.2e-18
                 HHHCTTHHHHHHHHHHHHHHHHHHHH..........................................HHHTTSS-S-SHHHHHHHHSTHHHHHHHHHC CS
      RhoGEF  39 kiiFsnieeilelhrsflleeLeerl......................................k...eseeqkeaqsigdvflkfadkfkkYseYcsn 96 
                 +++  n+ eil+lh ++ll+e+   +                                      +        +   +++ vf+k ++ f  Y+eY ++
  CCE30647.1  20 RSVNQNLCEILQLH-EELLSEVGRAIfqsndeevgqswssaahaqpvlvkqqwvqggqraahidNppvLCAGPQIVAEVSRVFEKKMSRFFIYEEYGAK 117
                 56778999******.888887777778999999999999999999999999999888888766615553344555789********************* PP

                 HHHHHHHHHH..........HHHHHHHHHHHHHHHHTSGGG...TT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSH CS
      RhoGEF  97 ypnalkllke..........lskknkkfkafleeaeerpec...skldLeslLikPvqRlprYpLLLkellkntpeshp 162
                 y+ +l+ + +          +++  + ++ +l++ ++ p c   +  +L++lL+kP+qR+++YpL++ ellk+tp+ + 
  CCE30647.1 118 YDMILQDIASvgqmlpgwecNQRGLEALSVLLHS-SNVPDChsrRASTLKDLLVKPMQRVCKYPLIFGELLKYTPALDC 195
                 *****************98733344444333333.4444555557789**************************98733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1693.49
//
Query:       CCE30648.1  [L=1548]
Description: related to vegetatible incompatibility protein HET-E-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-60  205.4   0.1    2.1e-60  204.3   0.1    1.6  1  NACHT_N        N-terminal domain of NWD NACHT-NTPase
    5.4e-33  112.5  24.6    5.3e-10   39.7   0.1    8.6  8  WD40           WD domain, G-beta repeat
    8.3e-20   70.9   1.4     0.0006   20.1   0.0    8.3  9  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    1.8e-11   44.3   0.2    6.9e-11   42.3   0.0    2.0  2  NACHT          NACHT domain
    1.4e-09   37.4   5.8       0.04   12.9   0.0    6.4  8  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
    7.3e-06   26.4   0.2    0.00018   21.9   0.0    2.7  2  AAA_19         AAA domain
    0.00013   21.4   2.4        2.7    7.2   0.1    5.3  6  Nbas_N         Neuroblastoma-amplified sequence, N terminal
    0.00028   21.3   0.1     0.0022   18.4   0.0    2.5  2  AAA_16         AAA ATPase domain
    0.00094   17.9   5.3       0.53    8.8   0.0    4.5  4  Nup160         Nucleoporin Nup120/160
     0.0062   15.9   0.0       0.84    8.9   0.0    3.0  2  WD40_like      WD40-like domain
     0.0096   15.8   0.0         13    5.8   0.0    4.5  3  PD40           WD40-like Beta Propeller Repeat
     0.0099   15.2   0.0      0.025   13.8   0.0    1.7  1  DUF2075        Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
      0.019   13.9   1.5         13    4.6   0.0    3.8  4  PALB2_WD40     Partner and localizer of BRCA2 WD40 domain
      0.041   14.3   0.0       0.12   12.8   0.0    1.8  1  AAA            ATPase family associated with various cellular
       0.05   13.4   0.1       0.23   11.2   0.0    2.0  2  AAA_11         AAA domain
      0.071   12.8   0.0       0.18   11.5   0.0    1.6  1  AAA_30         AAA domain
      0.091   11.5   0.9        3.2    6.4   0.0    3.1  3  Nucleoporin_N  Nup133 N terminal like
        0.1   11.8   0.0        0.2   10.8   0.0    1.4  1  TIP49          TIP49 P-loop domain


Domain annotation for each model (and alignments):
>> NACHT_N  N-terminal domain of NWD NACHT-NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.3   0.1   2.1e-63   2.1e-60       1     219 [.      93     333 ..      93     335 .. 0.90

  Alignments for each domain:
  == domain 1  score: 204.3 bits;  conditional E-value: 2.1e-63
     NACHT_N   1 erLWdrAYdslkes..eaelvkeYekils.................eeeekesskkeeeseekeeeseeekrqeqlkrlvekglkrvekkkkakegiae 80 
                 +rLW++AYd l+ s  +a +v +Y ++l                   + ++e++  +++s   ++ +++ krq++++ lv kg ++ + ++k+ +++ +
  CCE30648.1  93 QRLWNEAYDGLEDSgaTAGIVISYAETLTmaitgddeqksetlihaITGNDERKPDTNTSILPTDLKDPIKRQAHMRYLVMKGRDKFASDSKMAQAVGD 191
                 69************9999****************9877766554321222222222233333456678889**************************** PP

     NACHT_N  81 aaevvlavkdlideavkaspeaalaWagvclvleiltnpvtaakanreGiayVvsrmewYveLeelllkensieesesglr...eelekklvdLYkklL 176
                 +a++vl+++++id a++++p+aal+Wagvc++l+iltnp++  +an  Gi++Vvsrm+wY++L ++ll+e+si e ++  +   ++le+ ++dLYk lL
  CCE30648.1 192 VASFVLQARGVIDVAIRNVPQAALPWAGVCVALQILTNPAKVSRANLAGITHVVSRMDWYCSLVDHLLDERSIVEGREPANmvtQRLETLVLDLYKRLL 290
                 *************************************************************************99988877888*************** PP

     NACHT_N 177 eyqiksVcryyrnqllvllrdlvklddWdgelkkikeaEealr 219
                  yq+ks+ +yyrn++l++lr+l ++d Wd el++i +aEealr
  CCE30648.1 291 LYQMKSISSYYRNSGLTYLRELASWDSWDTELQAIATAEEALR 333
                 *****************************************98 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   1.7e-08   1.7e-05       3      37 ..     963     997 ..     962     998 .. 0.95
   2 ?    1.2   0.1      0.81     8e+02       5      38 .]    1049    1084 ..    1045    1084 .. 0.76
   3 ?   -1.8   0.0       6.9   6.8e+03      14      38 .]    1104    1126 ..    1092    1126 .. 0.73
   4 ?    5.9   0.9     0.026        26      14      38 .]    1146    1170 ..    1124    1170 .. 0.68
   5 !   13.9   0.1   7.5e-05     0.074       9      38 .]    1224    1254 ..    1218    1254 .. 0.93
   6 !   39.7   0.1   5.3e-13   5.3e-10       1      38 []    1258    1296 ..    1258    1296 .. 0.94
   7 !   30.2   0.1   5.5e-10   5.5e-07       2      37 ..    1301    1337 ..    1300    1338 .. 0.92
   8 ?    6.5   0.3     0.017        17       6      38 .]    1346    1379 ..    1342    1381 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.7e-08
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 ++rtl+GH +svt+lafs dg+++++G+  g+v iW
  CCE30648.1 963 NTRTLDGHyGSVTALAFSEDGHFFSTGT-EGSVTIW 997
                 689******99*****************.******* PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.81
                  EEEESS.SS..EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    5 rtltGH.ss..vtslafspdgawlasGsdDgtvriWd 38  
                  rt+ +H     + +  f++d++ ++   ++ tv++Wd
  CCE30648.1 1049 RTI-THpERckIACANFHSDNKSVVIVLYNATVHMWD 1084
                  454.475225698999*****9999886799*****8 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 6.9
                  EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   14 tslafspdgawlasGsdDgtvriWd 38  
                   +l  spd++ la +   + + +Wd
  CCE30648.1 1104 IAL--SPDNSVLAVSFLENLIGVWD 1126
                  455..99*99999887788888887 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.026
                  EEEEEETTSSEEEEE..ETTSEEEEEE CS
        WD40   14 tslafspdgawlasG..sdDgtvriWd 38  
                  +++ f  d++ l  G  s Dgt+ +Wd
  CCE30648.1 1146 RDFTFAADSKTL--GsiSTDGTICLWD 1170
                  466688999998..53446*******9 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 7.5e-05
                  SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    9 GH.ssvtslafspdgawlasGsdDgtvriWd 38  
                   H s++ ++  spd+++ a++s Dg vr Wd
  CCE30648.1 1224 SHrSGIADVVISPDKTLAATASHDGEVRTWD 1254
                  59889**************9999*******9 PP

  == domain 6  score: 39.7 bits;  conditional E-value: 5.3e-13
                  TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                  g+cl  + GH ++v+s+afspdg+ l+sGs D tvr+W+
  CCE30648.1 1258 GECLNRFIGHkDDVNSVAFSPDGQTLVSGSSDETVRLWN 1296
                  689*******777****************99*******8 PP

  == domain 7  score: 30.2 bits;  conditional E-value: 5.5e-10
                  EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40    2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37  
                  +cl+t+ GH s v  +afspdg+ +as sdD tvr+W
  CCE30648.1 1301 ECLQTWNGHsSAVQRVAFSPDGKIVASFSDDETVRLW 1337
                  79*******666************99779******** PP

  == domain 8  score: 6.5 bits;  conditional E-value: 0.017
                  EEESSSSE.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    6 tltGHssv.tslafspdgawlasGsdDgtvriWd 38  
                  +++G+s v +++afs d++ las +  g+v +Wd
  CCE30648.1 1346 SIRGQSEVhSCIAFSNDNTTLASIDNTGSVALWD 1379
                  5679988989**********98536677777776 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.033        33      34      69 ..     967    1001 ..     928    1014 .. 0.79
   2 ?    1.5   0.0      0.38   3.8e+02      42      90 ..    1018    1065 ..    1010    1067 .. 0.83
   3 ?    2.9   0.0      0.13   1.3e+02      34      79 ..    1052    1097 ..    1029    1106 .. 0.77
   4 ?    1.7   0.0      0.32   3.2e+02      27      71 ..    1091    1131 ..    1073    1142 .. 0.78
   5 !    7.8   0.0     0.004         4       7      79 ..    1101    1183 ..    1098    1202 .. 0.81
   6 !    9.2   0.0    0.0015       1.5      30      80 ..    1216    1268 ..    1190    1271 .. 0.79
   7 !   20.1   0.0     6e-07    0.0006      37      81 ..    1267    1311 ..    1265    1316 .. 0.90
   8 !    9.5   0.0    0.0012       1.2      37      71 ..    1309    1343 ..    1306    1346 .. 0.91
   9 !   14.0   0.0   4.7e-05     0.047       2      81 ..    1317    1394 ..    1316    1405 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.033
  ANAPC4_WD40   34 edkedsevrsLaWkpdgklLavaysdgevrlldaes 69  
                    d++ ++v++La+++dg+++  ++ +g+v + + ++
   CCE30648.1  967 LDGHYGSVTALAFSEDGHFFSTGT-EGSVTIWETKT 1001
                   4677789************99986.58888877665 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.38
  ANAPC4_WD40   42 rsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90  
                   ++L+++ d + +  +y d +++++d e+++ +++++  +  +++c ++ 
   CCE30648.1 1018 EELSFSADSTSILAVYGD-TLHICDLETKTQIRTITHPERCKIACANFH 1065
                   578888888888888877.69*************998888789998876 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.13
  ANAPC4_WD40   34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79  
                   ++ e  ++ + +++ d+k  +++  + +v++ da +  + + ++++
   CCE30648.1 1052 THPERCKIACANFHSDNKSVVIVLYNATVHMWDAATDSTHQIFTAS 1097
                   5567789999999999**99**********9999998887666654 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.32
  ANAPC4_WD40   27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71  
                   ++++t+  ++e +++  +a +pd+++Lav++ ++ + + d+  g+
   CCE30648.1 1091 HQIFTA--SGETKSI--IALSPDNSVLAVSFLENLIGVWDVAAGT 1131
                   556666..4444444..5668*************99999998775 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.004
  ANAPC4_WD40    7 mDLiAlatedgellvfRl.ngqrvwtl.........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79  
                   + +iAl  +++ l+v+ l n   vw++           + +++  r++ +  d k L     dg++ l d+esg++ +s+s +
   CCE30648.1 1101 KSIIALSPDNSVLAVSFLeNLIGVWDVaagtghsarVLKRDGEAFRDFTFAADSKTLGSISTDGTICLWDIESGTCKRSFSPG 1183
                   5677777777777777775667788887777777665567888999*****************************99988765 PP

  == domain 6  score: 9.2 bits;  conditional E-value: 0.0015
  ANAPC4_WD40   30 wtl..eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80  
                   w+   e++++ s + ++  +pd +l a a +dgevr  d+e g++++ +  ++
   CCE30648.1 1216 WSQkdEAQSHRSGIADVVISPDKTLAATASHDGEVRTWDIERGECLNRFIGHK 1268
                   5544455778889999999***************************9987665 PP

  == domain 7  score: 20.1 bits;  conditional E-value: 6e-07
  ANAPC4_WD40   37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81  
                   ++  v+s+a++pdg+ L+ + sd +vrl ++e ++++++++ +s+
   CCE30648.1 1267 HKDDVNSVAFSPDGQTLVSGSSDETVRLWNVERAECLQTWNGHSS 1311
                   56789*********************************9988876 PP

  == domain 8  score: 9.5 bits;  conditional E-value: 0.0012
  ANAPC4_WD40   37 edsevrsLaWkpdgklLavaysdgevrlldaesgk 71  
                   ++s v+ +a++pdgk+ a   +d +vrl  + sg 
   CCE30648.1 1309 HSSAVQRVAFSPDGKIVASFSDDETVRLWTVDSGS 1343
                   6789*************************999986 PP

  == domain 9  score: 14.0 bits;  conditional E-value: 4.7e-05
  ANAPC4_WD40    2 swcptmDLiAlatedgellvfRlngqrvwtleedkedsevr.sLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81  
                   +++p   ++A  ++d+ +++  ++    +++     +sev+ ++a+++d++ La   + g+v l d  sgk  h ++ +++
   CCE30648.1 1317 AFSPDGKIVASFSDDETVRLWTVDSGSSFSI---RGQSEVHsCIAFSNDNTTLASIDNTGSVALWDTTSGKQTHLFRKEDT 1394
                   6899999999999999999999999999999...777788658*******************************9987766 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.4   2.4e+03     101     142 ..      19      60 ..       6      76 .. 0.79
   2 !   42.3   0.0     7e-14   6.9e-11       1     130 [.     439     588 ..     439     609 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.4
                 ........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE CS
       NACHT 101 ekqpvrtlLselirkkllpeasllltvrpralrdleeqleea 142
                  +++++ lL +l++ ++ ++++ + tv  +  r l++q++ a
  CCE30648.1  19 PPKASQGLLPSLVKSAVDQTVKAVTTVVQTEIRALPKQIVAA 60 
                 567889999999999999999999999999999999999887 PP

  == domain 2  score: 42.3 bits;  conditional E-value: 7e-14
                 SCEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-........-HCHHHCCCCTS--SSS-C..............CHHHHCCSC CS
       NACHT   1 rlvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna.....rsladllfsqlpepaapvse..............vwavllelp 80 
                 r+++++G +G GKT+Ll ++++++ ++    +  + ++++++++  +  n      r+l  +l  q+p ++++ +                +  +    
  CCE30648.1 439 RVLWIKGGPGTGKTMLLMGIVREMSSRSAAFVP-SASYYFCQGTADQMRNNataivRGLLWMLLIQQPRLIQHLRSkhryagsslftdsnAFGAMSDAL 536
                 799*************************99985.9*******9988766656999*9****************99988888888888888666666666 PP

                 CCEE.........EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECC CS
       NACHT  81 erlL.........lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpr 130
                 e++L         +++D+lDe+ +  +      + +l+ + +r    +++++l+++rp+
  CCE30648.1 537 ESMLkdpamtptcFVVDALDECDESVHD-----MFQLICKSLRV--SKKVRWLVSSRPG 588
                 6666888888999***********8888.....77777777777..8999999999996 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.19   1.9e+02     182     214 ..     909     941 ..     885     943 .. 0.84
   2 ?   -2.3   0.1       1.7   1.7e+03     268     288 ..     993    1012 ..     984    1047 .. 0.71
   3 ?   -1.6   0.0         1     1e+03     192     226 ..    1103    1137 ..    1061    1144 .. 0.71
   4 ?   -0.3   0.0      0.42   4.1e+02     168     216 ..    1123    1171 ..    1085    1177 .. 0.56
   5 !   12.9   0.0     4e-05      0.04     186     217 ..    1225    1256 ..    1210    1268 .. 0.85
   6 !   11.9   0.0   7.8e-05     0.077     187     234 ..    1268    1310 ..    1255    1312 .. 0.85
   7 !    7.3   0.0    0.0019       1.9     187     216 ..    1310    1339 ..    1307    1349 .. 0.88
   8 ?    0.9   0.0      0.18   1.8e+02     182     215 ..    1345    1379 ..    1340    1389 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.19
    Ge1_WD40 182 lkieehsliveaafspdGtalatasedGevkff 214
                 + + ++s+i  aa+ + Gtal  +  d  v+ f
  CCE30648.1 909 FLMAHQSTIKAAALQTYGTALLFSPRDSHVRRF 941
                 5577889*********************99966 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
    Ge1_WD40  268 elklWscelWtClqtikfaps 288 
                   + +W +++Wt   ti f p+
  CCE30648.1  993 SVTIWETKTWTTACTI-FLPD 1012
                  4789******999999.4444 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1
    Ge1_WD40  192 eaafspdGtalatasedGevkffqvyledeeeprC 226 
                    a+spd  +la++  + ++  + v     ++ r 
  CCE30648.1 1103 IIALSPDNSVLAVSFLENLIGVWDVAAGTGHSARV 1137
                  3479*********9999999999987766666665 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.42
    Ge1_WD40  168 gsgelsveeieegllkieehsliveaafspdGtalatasedGevkffqv 216 
                  g +++ + + +++ +  ++     + +f++d  +l   s+dG++ ++ +
  CCE30648.1 1123 GVWDVAAGTGHSARVLKRDGEAFRDFTFAADSKTLGSISTDGTICLWDI 1171
                  4444433333333333333334556667777777777777777666655 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 4e-05
    Ge1_WD40  186 ehsliveaafspdGtalatasedGevkffqvy 217 
                  + s i + ++spd t  atas+dGev+ + + 
  CCE30648.1 1225 HRSGIADVVISPDKTLAATASHDGEVRTWDIE 1256
                  447899**********************9985 PP

  == domain 6  score: 11.9 bits;  conditional E-value: 7.8e-05
    Ge1_WD40  187 hsliveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhd 234 
                  +  + + afspdG +l   s+d +v+++ v     e+  CL  W  h 
  CCE30648.1 1268 KDDVNSVAFSPDGQTLVSGSSDETVRLWNV-----ERAECLQTWNGHS 1310
                  4578899********************987.....5678999999985 PP

  == domain 7  score: 7.3 bits;  conditional E-value: 0.0019
    Ge1_WD40  187 hsliveaafspdGtalatasedGevkffqv 216 
                   s +   afspdG  +a  s d +v+++ v
  CCE30648.1 1310 SSAVQRVAFSPDGKIVASFSDDETVRLWTV 1339
                  3589999*********************88 PP

  == domain 8  score: 0.9 bits;  conditional E-value: 0.18
    Ge1_WD40  182 lkieehsli.veaafspdGtalatasedGevkffq 215 
                  + i+ +s++ ++ afs d t+la   + G v ++ 
  CCE30648.1 1345 FSIRGQSEVhSCIAFSNDNTTLASIDNTGSVALWD 1379
                  56777775515678999999999999999998886 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3      0.44   4.4e+02      56     118 ..     346     405 ..     320     415 .. 0.55
   2 !   21.9   0.0   1.8e-07   0.00018       7     126 ..     435     570 ..     430     680 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.44
      AAA_19  56 kelrerlaalgaeatTiHrlalldfddlltealelleeaeeekklqeeellivDEfqdvdelq 118
                 ++l+  +++ ++  +T+ ++   d++d ++ + e + + ++++    ++l++vD ++d+d l+
  CCE30648.1 346 QQLSRLMQSGDKMQSTLGNI-HQDLQDFISAQKEKVAN-DKDSAC-LRDLFFVDPMSDLDRLE 405
                 33333333333334444444.34455555444444333.333333.488***********554 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 1.8e-07
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae...............atTiHrlal.......ldfddl 83 
                 +++++vl + +GpGtGKT +l++iv+++ ++      + +   f +  a+++r++ +a+ +                 +  Hr a              
  CCE30648.1 435 EVRRRVLWIKGGPGTGKTMLLMGIVREMSSRSAA-FVPSASYYFCQGTADQMRNNATAIVRGllwmlliqqprliqhLRSKHRYAGsslftdsN----- 527
                 68899***********************998854.56777777888888888887755554467777777777777755555555433322220..... PP

      AAA_19  84 ltealelle...eaeeekklqeeellivDEfqdvdelqyrLlkall 126
                    a++++    e+  +++    ++++vD   + de    +++ ++
  CCE30648.1 528 ---AFGAMSdalESMLKDPAMTPTCFVVDALDECDESVHDMFQLIC 570
                 ...2222222222222233335557777777777766666666665 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       0.2     2e+02     235     259 ..    1104    1128 ..    1089    1136 .. 0.87
   2 ?   -1.1   0.0      0.95   9.5e+02     235     262 ..    1148    1175 ..    1130    1189 .. 0.76
   3 ?    4.9   0.0     0.014        14     214     259 ..    1208    1256 ..    1167    1263 .. 0.73
   4 ?    0.6   0.0      0.28   2.8e+02     226     268 ..    1265    1307 ..    1259    1312 .. 0.83
   5 ?    1.9   0.1      0.11   1.1e+02     226     260 ..    1307    1341 ..    1284    1355 .. 0.76
   6 !    7.2   0.1    0.0027       2.7     234     270 ..    1356    1392 ..    1311    1396 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.2
      Nbas_N  235 mslspdgtllavihfsgklsiwdip 259 
                  ++lspd ++lav  +   + +wd+ 
  CCE30648.1 1104 IALSPDNSVLAVSFLENLIGVWDVA 1128
                  689********************96 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.95
      Nbas_N  235 mslspdgtllavihfsgklsiwdipslk 262 
                  ++++ d   l  i   g +++wdi s  
  CCE30648.1 1148 FTFAADSKTLGSISTDGTICLWDIESGT 1175
                  577899999***************8844 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.014
      Nbas_N  214 lkllslklysrka...eekdgvfkmslspdgtllavihfsgklsiwdip 259 
                   +ll+ k +s+k+   + + g+  + +spd tl a+    g++  wdi 
  CCE30648.1 1208 TRLLDTKDWSQKDeaqSHRSGIADVVISPDKTLAATASHDGEVRTWDIE 1256
                  35555666665541115678***************************95 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.28
      Nbas_N  226 aeekdgvfkmslspdgtllavihfsgklsiwdipslkqrgewe 268 
                     kd v  +++spdg  l        + +w++   +   +w+
  CCE30648.1 1265 IGHKDDVNSVAFSPDGQTLVSGSSDETVRLWNVERAECLQTWN 1307
                  567899999999****999999999999999998888877886 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.11
      Nbas_N  226 aeekdgvfkmslspdgtllavihfsgklsiwdips 260 
                  +     v ++++spdg ++a       + +w++ s
  CCE30648.1 1307 NGHSSAVQRVAFSPDGKIVASFSDDETVRLWTVDS 1341
                  55667899999*******99999999999999976 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0027
      Nbas_N  234 kmslspdgtllavihfsgklsiwdipslkqrgeweqe 270 
                   +++s d t la i  +g++++wd  s kq   +++e
  CCE30648.1 1356 CIAFSNDNTTLASIDNTGSVALWDTTSGKQTHLFRKE 1392
                  468899*******************999998777665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1         3     3e+03      92     129 ..     313     354 ..     274     377 .. 0.70
   2 !   18.4   0.0   2.2e-06    0.0022      25     164 ..     439     575 ..     427     583 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3
      AAA_16  92 aeleawrekleealaavpelagaea....srllellkrllal 129
                 a+++ w+++l++ ++a  +l++a+     ++ l++l+rl++ 
  CCE30648.1 313 ASWDSWDTELQAIATAEEALRAASVqyntQSSLQQLSRLMQS 354
                 567888888888888766777666677776666666766644 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2.2e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekd........ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagae 115
                 +++ + G +G+GK+ l+  + r+++ +          +f +g++dq +        a+a+ r  l   l ++   ++ ++ r k   ++a ++  +++ 
  CCE30648.1 439 RVLWIKGGPGTGKTMLLMGIVREMSSRsaafvpsaSYYFCQGTADQMRN------NATAIVRGLLWMLLIQQ--PRLIQHLRSK--HRYAGSSLFTDSN 527
                 788999***********99999999997888888667888999999833......44555443333333333..2223333322..2222122223333 PP

      AAA_16 116 a.srllellkrll.allsrderplvlvlDdlqwadeaslqllaaLlrlles 164
                 a  ++ ++l ++l + + +   p+ +v+D l+  de+ ++++++++++l  
  CCE30648.1 528 AfGAMSDALESMLkDPAMT---PTCFVVDALDECDESVHDMFQLICKSLRV 575
                 3578888899999777777...9********************99988765 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.099        98     195     254 ..    1117    1178 ..    1109    1181 .. 0.83
   2 !    8.8   0.0   0.00054      0.53     219     254 ..    1228    1262 ..    1206    1274 .. 0.73
   3 ?    3.9   0.1     0.017        17     229     255 ..    1279    1305 ..    1269    1309 .. 0.83
   4 ?    1.2   0.1      0.12   1.2e+02     228     254 ..    1319    1346 ..    1304    1375 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.099
                  B--TTTT..TSS--SS---TT-ECEEEEET......TTTEEEEEETT-EEEEEETTTTEEEE CS
      Nup160  195 slsgllg.lladpsrrksgasvalsldvavavvei.gqtylfalsrdgkLrvWnlltgkcla 254 
                  +l +l+g +  ++  + s++  + +  ++ +++ + ++++l ++s dg++ +W++++g+c +
  CCE30648.1 1117 FLENLIGvWDVAAGTGHSARVLKRDGEAFRDFTFAaDSKTLGSISTDGTICLWDIESGTCKR 1178
                  5677788888888888888888888888888887789*********************9966 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00054
                  EEEET......TTTEEEEEETT-EEEEEETTTTEEEE CS
      Nup160  219 ldvavavvei.gqtylfalsrdgkLrvWnlltgkcla 254 
                    + v  v + ++t+++++s dg++r W+++ g cl 
  CCE30648.1 1228 GIADV--VISpDKTLAATASHDGEVRTWDIERGECLN 1262
                  33333..3224********************999986 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.017
                  TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160  229 gqtylfalsrdgkLrvWnlltgkclat 255 
                  + ++l++ s+d ++r+Wn++ + cl t
  CCE30648.1 1279 DGQTLVSGSSDETVRLWNVERAECLQT 1305
                  667888999***************988 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.12
                  ..TTTEEEEEETT-EEEEEETTTTEEEE CS
      Nup160  228 i.gqtylfalsrdgkLrvWnlltgkcla 254 
                  + + ++++++s d ++r+W +++g+  +
  CCE30648.1 1319 SpDGKIVASFSDDETVRLWTVDSGSSFS 1346
                  248899***************9998665 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.039        39       6     110 ..    1190    1298 ..    1188    1316 .. 0.52
   2 !    8.9   0.0   0.00084      0.84       5     114 ..    1315    1428 ..    1311    1447 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.039
   WD40_like    6 idiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilv..vtlDGtillslleneeeven.ekieedistvkvi..ddklli 97  
                  i +s++ ++i++Gg +d+ ++l+++   ++   +s +  +  v +++ d+ l   ++ DG + + ++e +e  +     ++d+  v     ++ l+ 
  CCE30648.1 1190 IALSPDLKIIAMGGLEDTTRLLDTKDWSQKDEAQSHRSGIADV-VISPDKTLAatASHDGEVRTWDIERGECLNRfIGHKDDVNSVAFSpdGQTLVS 1285
                  5566677777777777777777777777766666666655555.44444444301456777777777777743321344555555543211334444 PP

   WD40_like   98 GtnkGsiyvfskd 110 
                  G++  ++ +++ +
  CCE30648.1 1286 GSSDETVRLWNVE 1298
                  5555555554443 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00084
   WD40_like    5 sidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlD..Gtillsllenee...evenekieedistvkvidd.kl 95  
                   + +s++g++++  ++d+++++ +++s+ s si  +    v  +   ++d    +++D  G + l + + ++     ++e+  e ++ v + dd  +
  CCE30648.1 1315 RVAFSPDGKIVASFSDDETVRLWTVDSGSSFSIRGQ--SEVHSCIAFSNDNTTLASIDntGSVALWDTTSGKqthLFRKEDTVEPLALVFTPDDsAV 1409
                  68899*************************999764..34777777888888888888557777777776665556788888899999887665269 PP

   WD40_like   96 liGtnkGsiyvfskdlqle 114 
                  l+Gt+ G iy ++k   ++
  CCE30648.1 1410 LMGTSSGCIYSLDKATLSR 1428
                  9*********998865554 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.013        13      15      24 ..    1275    1284 ..    1272    1284 .. 0.89
   2 ?    3.1   0.1     0.097        96      15      23 ..    1317    1325 ..    1316    1331 .. 0.86
   3 ?   -0.2   0.0         1     1e+03      12      24 ..    1355    1367 ..    1350    1367 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.013
                  EE-TTSSEEE CS
        PD40   15 sfSPDGkrla 24  
                  +fSPDG++l+
  CCE30648.1 1275 AFSPDGQTLV 1284
                  8*******96 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.097
                  EE-TTSSEE CS
        PD40   15 sfSPDGkrl 23  
                  +fSPDGk  
  CCE30648.1 1317 AFSPDGKIV 1325
                  7*****975 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1
                  EEEEE-TTSSEEE CS
        PD40   12 gaPsfSPDGkrla 24  
                   +++fS+D ++la
  CCE30648.1 1355 SCIAFSNDNTTLA 1367
                  689******9997 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.5e-05     0.025       2      26 ..     439     463 ..     438     526 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.5e-05
     DUF2075   2 avvlVtGvaGtGKtvvllnllaele 26 
                 +v+ ++G++GtGKt++l+ ++ e++
  CCE30648.1 439 RVLWIKGGPGTGKTMLLMGIVREMS 463
                 7899******************992 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.7   1.7e+03     294     332 ..    1070    1107 ..    1044    1120 .. 0.59
   2 ?    4.6   0.0     0.013        13     293     321 ..    1155    1183 ..    1128    1199 .. 0.85
   3 ?    1.2   0.0      0.14   1.4e+02     294     348 ..    1240    1293 ..    1233    1296 .. 0.81
   4 ?    4.0   0.0      0.02        20     293     348 ..    1364    1419 ..    1360    1421 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.7
  PALB2_WD40  294 laaavltsGaiavWdlllghctalllpesdesWslvrWs 332 
                  ++  vl   ++ +Wd      t ++ + s+e+ s++  s
  CCE30648.1 1070 SVVIVLYNATVHMWDAATDS-THQIFTASGETKSIIALS 1107
                  44555566666666654433.345555555555555544 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.013
  PALB2_WD40  293 qlaaavltsGaiavWdlllghctalllpe 321 
                  ++  ++ t G+i +Wd+  g+c+  + p 
  CCE30648.1 1155 KTLGSISTDGTICLWDIESGTCKRSFSPG 1183
                  5667899***************9877775 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.14
  PALB2_WD40  294 laaavltsGaiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsvl 348 
                  laa+    G +  Wd+ +g+c   ++ + d+  s v +s    +l++G  d +v 
  CCE30648.1 1240 LAATASHDGEVRTWDIERGECLNRFIGHKDDVNS-VAFSPDGQTLVSGSSDETVR 1293
                  456666789**************99999998776.77888888899998888775 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.02
  PALB2_WD40  293 qlaaavltsGaiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsvl 348 
                  ++ a++  +G++a+Wd   g+ t l+  e   +   + ++  ds +l G   G ++
  CCE30648.1 1364 TTLASIDNTGSVALWDTTSGKQTHLFRKEDTVEPLALVFTPDDSAVLMGTSSGCIY 1419
                  466889999************9988877766665556699999******9999886 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00012      0.12       4      69 ..     444     557 ..     441     568 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
                 ESSTTSSHHHHHHHHHHHHTHE...........EEEEETTTCSSS.......................................STTHHHHHHHHHHHH CS
         AAA   4 yGppGtGKTllakavakelgve...........fleisgsellsk.......................................yvgesekkirelfke 52 
                  G pGtGKT+l   +++e++++           f++  + +++++                                        +g++++ ++ ++k+
  CCE30648.1 444 KGGPGTGKTMLLMGIVREMSSRsaafvpsasyyFCQGTADQMRNNataivrgllwmlliqqprliqhlrskhryagsslftdsnAFGAMSDALESMLKD 542
                 699***************964444444455555444444444433444444455554444444444567777767777666677777777777777766 PP

                 HHHTSTSEEEEEETGGG CS
         AAA  53 akekakpsilfiDEida 69 
                   ++ +p+++++D +d+
  CCE30648.1 543 -PAM-TPTCFVVDALDE 557
                 .233.366666666665 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3       1.7   1.7e+03     101     149 ..     329     378 ..     319     411 .. 0.60
   2 ?   11.2   0.0   0.00023      0.23      19      44 ..     440     465 ..     426     492 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.7
      AAA_11 101 seavksvsleekvekrlekee.kaqlakeiskeleklakelrafeeeeek 149
                 +ea+++ s+++ ++++l++ +  +q  ++++++l +++++l++f + +++
  CCE30648.1 329 EEALRAASVQYNTQSSLQQLSrLMQSGDKMQSTLGNIHQDLQDFISAQKE 378
                 56667777777777776664433333344444555555555554444332 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00023
      AAA_11  19 itliqGPPGtgKTktivellsqllsr 44 
                 +  i+G PGtgKT  ++++++++ sr
  CCE30648.1 440 VLWIKGGPGTGKTMLLMGIVREMSSR 465
                 5689******************9543 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00018      0.18      18      44 ..     438     464 ..     435     489 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
      AAA_30  18 drvavltGpAGtGKttalkalreawea 44 
                 +rv  ++G++GtGKt++l ++++ + +
  CCE30648.1 438 RRVLWIKGGPGTGKTMLLMGIVREMSS 464
                 67999************9999655544 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.9   1.8e+03     214     236 ..    1155    1175 ..    1148    1181 .. 0.75
   2 ?    6.4   0.0    0.0032       3.2     197     235 ..    1222    1259 ..    1200    1297 .. 0.82
   3 ?    1.7   0.1     0.082        82     203     250 ..    1312    1358 ..    1261    1396 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.9
                     CEEEEEETTSEEEEEEEETTCEE CS
  Nucleoporin_N  214 rilytlsskgvirvydlsasnge 236 
                     + l ++s++g+i  +d++  +g 
     CCE30648.1 1155 KTLGSISTDGTICLWDIE--SGT 1175
                     677789999999999999..344 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0032
                     ----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCE CS
  Nucleoporin_N  197 gasereeivqlridssrrilytlsskgvirvydlsasng 235 
                     ++s r+ i+ ++i++ + +  t+s +g++r++d++ +++
     CCE30648.1 1222 AQSHRSGIADVVISPDKTLAATASHDGEVRTWDIE-RGE 1259
                     67899*****************************9.654 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.082
                     -EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHH CS
  Nucleoporin_N  203 eivqlridssrrilytlsskgvirvydlsasngesslksdidirqill 250 
                     ++ +++ ++  +i+ + s + ++r + +  s++++s++++ ++ + ++
     CCE30648.1 1312 AVQRVAFSPDGKIVASFSDDETVRLWTVD-SGSSFSIRGQSEVHSCIA 1358
                     34444444444566666666666666666.555566666666666555 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0002       0.2      48      82 ..     436     471 ..     431     482 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX CS
       TIP49  48 laGravLlaGpsgtGktalaiaiskelg.edvpfva 82 
                 +  r++ ++G +gtGkt l ++i +e++ ++  fv 
  CCE30648.1 436 VRRRVLWIKGGPGTGKTMLLMGIVREMSsRSAAFVP 471
                 5668899********************955666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.15u 0.34s 00:00:01.49 Elapsed: 00:00:00.53
# Mc/sec: 8734.05
//
Query:       CCE30649.1  [L=438]
Description: uncharacterized protein CPUR_04498 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.037   13.7   0.0       0.06   13.0   0.0    1.2  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.3e-06      0.06     178     235 ..     211     270 ..     188     277 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.3e-06
       RVT_2 178 kiledvkkelakkfklkdlgkvskfLGieiaq..eaggiklsladyiakvvkkfeltdak 235
                 + l+ +   l+ +++l   g++++fLGi++ +  ++ ++ ls +  i+kv +kf+ t   
  CCE30649.1 211 EDLKALIAGLKDHYELDARGEANFFLGIQLFRdrKNRKVYLSHEVLISKVGDKFNQTARA 270
                 45666677899******************9985567788899999*********988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3252.34
//
Query:       CCE30650.1  [L=115]
Description: uncharacterized protein CPUR_04499 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-22   78.6   0.1    3.2e-22   78.4   0.1    1.1  1  SBDS      Shwachman-Bodian-Diamond syndrome (SBDS) protein
  ------ inclusion threshold ------
      0.029   13.5   0.1       0.55    9.4   0.1    1.9  2  NB-ARC    NB-ARC domain


Domain annotation for each model (and alignments):
>> SBDS  Shwachman-Bodian-Diamond syndrome (SBDS) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.1   3.5e-26   3.2e-22       2      85 ..       8      98 ..       7     101 .. 0.95

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 3.5e-26
                -EEEEEEETTEEEEEEE.-HHHHHHHHC.TT---HHHHBSSSS-EEETTTT.....EE--HHHHHHHHS---HHHHHHHHHHHSEEE--HH CS
        SBDS  2 vsivrykkgkkrFeiav.yknklleyre.gkeidLsevlqsekiFtnaskG.....etaskselekafgteskdeiikeILkkGeiqvsae 85
                +s+v++++ + +F i+v + ++++++++ +++i+L+++++++k+F+++++G     + a+k+ l+ +f+te++de+ik+IL +G++q  ++
  CCE30650.1  8 QSKVHFQGRNDDFLIFVdDVEEYKKWKNgDTTIPLAQFVSTFKVFLTHKQGtqgtyDAAPKNVLSAEFDTEDVDEVIKKILLNGNMQTVEM 98
                689************************9778********************************************************8765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   6.1e-05      0.55     101     138 ..      16      55 ..       1      58 [. 0.80
   2 ?    3.9   0.0    0.0029        26      44      90 ..      56     102 ..      52     115 .] 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 6.1e-05
                 CCTTEEEEEEEE-SHHHH.......HHHHCHTTSEEEEEE CS
      NB-ARC 101 ltkrfllvlDDVweeedwdk..igvvlparenrlrvllTT 138
                 ++  fl+  DDV e+++w++  ++++l ++ +  +v lT 
  CCE30650.1  16 RNDDFLIFVDDVEEYKKWKNgdTTIPLAQFVSTFKVFLTH 55 
                 45589*************8644889999999999999995 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0029
                 HCCCCCCBTEEEEEEEESXXHHHHHHHXXHHHHHCCCTTSSSS-STT CS
      NB-ARC  44 sdevegrFdsvawvvvsktdkseeiletilkeLslseddleekeeve 90 
                  + ++g++d     v+s +++ e++ e i k L + + ++ e++ ++
  CCE30650.1  56 KQGTQGTYDAAPKNVLSAEFDTEDVDEVIKKILLNGNMQTVEMPARQ 102
                 4778999*******************999999988887777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 887.46
//
Query:       CCE30651.1  [L=143]
Description: uncharacterized protein CPUR_04500 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1145.26
//
Query:       CCE30652.1  [L=103]
Description: uncharacterized protein CPUR_04501 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       201  (0.0112109); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 843.16
//
Query:       CCE30653.1  [L=231]
Description: uncharacterized protein CPUR_04502 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-42  143.9   6.4    1.9e-42  143.9   6.4    1.9  2  OPA3        Optic atrophy 3 protein (OPA3)
    8.5e-05   22.3  13.4    8.5e-05   22.3  13.4    1.6  2  SR-25       Nuclear RNA-splicing-associated protein
     0.0016   17.4   1.8     0.0025   16.8   1.8    1.2  1  DUF4702     Domain of unknown function (DUF4702)
     0.0024   18.8   2.4     0.0024   18.8   2.4    1.9  2  EBP50_C     EBP50, C-terminal
  ------ inclusion threshold ------
      0.012   15.9   6.5      0.017   15.4   6.5    1.2  1  DUF3446     Early growth response N-terminal domain
      0.015   15.6  18.4      0.015   15.6  18.4    1.6  2  DUF755      Domain of unknown function (DUF755)
      0.038   13.2   3.4      0.071   12.4   3.4    1.4  1  SMN         Survival motor neuron protein (SMN)
       0.38   10.2   1.3       0.66    9.4   1.3    1.3  1  DUF4400     Domain of unknown function (DUF4400)
       0.65    8.7   3.7       0.86    8.3   3.7    1.2  1  Presenilin  Presenilin
        1.1    8.2   5.7          1    8.3   0.7    2.0  2  Kre28       Spindle pole body component
        1.2    6.2   5.6        1.7    5.7   5.6    1.2  1  GREB1       Gene regulated by oestrogen in breast cancer


Domain annotation for each model (and alignments):
>> OPA3  Optic atrophy 3 protein (OPA3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.9   6.4   1.2e-45   1.9e-42       1     125 []       4     195 ..       4     195 .. 0.93
   2 ?    2.3   1.9     0.085   1.4e+02      96     125 .]     186     216 ..     184     216 .. 0.83

  Alignments for each domain:
  == domain 1  score: 143.9 bits;  conditional E-value: 1.2e-45
        OPA3   1 lpllKLaslavRtlsKPianrikaqakehprfrkvcirlaqalhrlemrlrlrllgd...ekaa................................... 61 
                 lpl+KLa+l+vR++sK++an+ikaqa++hprfr+++++++q++h+l+mrl+++ll+d   e                                      
  CCE30653.1   4 LPLFKLAALFVRHVSKYGANHIKAQAHDHPRFRAFAAKYGQHIHQLNMRLSVALLRDpeaE--Rrakeraeaptvkteeqhkidealkekaknnsasss 100
                 79*******************************************************6442..1568999***************************** PP

        OPA3  62 ............................rkirpLseekAvelGAellgEafifsvagglilyEywrssrke...akkeeevkeeleeleerieel 125
                                             r++rpL+e+kAv+l+A+++g+afi++va++li+yE+w++ +k+   +++ +++ e++e++++r+ el
  CCE30653.1 101 sssssssssssskssskkfqvkfdsvwkRRFRPLPEAKAVDLFADVIGDAFILGVACALITYESWKALQKPdvnKQRMDDLSERVEAIRRREAEL 195
                 ***********************************************************************333355556666788888888775 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.085
        OPA3  96 Eywrssrke.akkeeevkeeleeleerieel 125
                 E++r+++ e ++ ee++++++e+le+ ++el
  CCE30653.1 186 EAIRRREAElSEAEEAQRQRFEKLEAALREL 216
                 77888888867889999999*****999876 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3  13.4   5.2e-08   8.5e-05      37      88 ..      68     118 ..      43     134 .. 0.50
   2 ?   -2.8   0.5       2.4   3.9e+03     118     118 ..     194     194 ..     166     222 .. 0.49

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 5.2e-08
       SR-25  37 qsrkassasekeeerskekkkkkrrrssssssssssssssssssssssssdd 88 
                 ++r ++ + ++e e++k  +  k+++++ s+sssssssssssssss+sss++
  CCE30653.1  68 KERAEAPTVKTE-EQHKIDEALKEKAKNNSASSSSSSSSSSSSSSSKSSSKK 118
                 333333333333.344333333344334444444444444444444444433 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.4
       SR-25 118 e 118
                 e
  CCE30653.1 194 E 194
                 1 PP

>> DUF4702  Domain of unknown function (DUF4702)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.8   1.5e-06    0.0025      95     149 ..      59     112 ..      53     140 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.5e-06
     DUF4702  95 qdpvevpssgrrvrarpslstvkrhrvrPslCvGrpnnyPscsssmsdshsslta 149
                 +dp    ++++r++a p+++t ++h++  +l     nn  s+sss s s ss ++
  CCE30653.1  59 RDPEAERRAKERAEA-PTVKTEEQHKIDEALKEKAKNNSASSSSSSSSSSSSSSS 112
                 455555555555554.8999999***************99999888877776544 PP

>> EBP50_C  EBP50, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   2.4   1.5e-06    0.0024       9      80 ..      50     121 ..      27     150 .. 0.62
   2 ?   -0.5   0.1       1.4   2.3e+03      33      49 ..     184     200 ..     158     223 .. 0.49

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.5e-06
     EBP50_C   9 kvvPteehltgplPepvvnleaeeksneeeleeeelsellsksrklsssasessassetsleessskespea 80 
                 ++  + + l  p  e +++ +ae +  ++e++++  + l++k +++s+s+s+ss+ss++s++ +ss++++++
  CCE30653.1  50 NMRLSVALLRDPEAERRAKERAEAPTVKTEEQHKIDEALKEKAKNNSASSSSSSSSSSSSSSSKSSSKKFQV 121
                 555555666666666655555444444444444444444455555555555555555555555555555444 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.4
     EBP50_C  33 ksneeeleeeelsells 49 
                 +++ ++ +e+else+ +
  CCE30653.1 184 RVEAIRRREAELSEAEE 200
                 22222222222222221 PP

>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   6.5   1.1e-05     0.017      34      58 ..      96     117 ..      86     145 .. 0.47

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
     DUF3446  34 psspsssssssssssssssspslsc 58 
                 ++s+ss sssssssssss+s+  s 
  CCE30653.1  96 SASSSS-SSSSSSSSSSSKSS--SK 117
                 222222.22222222222222..22 PP

>> DUF755  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6  18.4   9.3e-06     0.015      66     123 .]      64     116 ..      43     118 .. 0.54
   2 ?   -2.9   0.7       4.7   7.7e+03      53      74 ..     177     196 ..     166     223 .. 0.43

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.3e-06
      DUF755  66 qkkrkeqkkssqthkkkkkksrnvssrsakkksakkrkksssSSssssssssssseSs 123
                 +++ ke +++ + ++++++k        a k +ak+ + sssSSssssssssss++Ss
  CCE30653.1  64 ERRAKERAEAPTVKTEEQHKID-----EALKEKAKNNSASSSSSSSSSSSSSSSKSSS 116
                 4555555555555555555555.....4555555555555555555555555555554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.7
      DUF755  53 qLiqlsqqlqqkkqkkrkeqkk 74 
                 ++  ls++++    ++r+++ +
  CCE30653.1 177 RMDDLSERVEA--IRRREAELS 196
                 44444444421..222222222 PP

>> SMN  Survival motor neuron protein (SMN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.4   4.4e-05     0.071     116     178 ..      74     137 ..      63     149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.4e-05
         SMN 116 adllteasdededalkeanvnetesstdesdrssrsakakdk.snleiakssqknlrfppvppp 178
                   ++te++++ ++alke+ +n++ ss+  s  ss s+ +k++ + +++   s +  rf p p  
  CCE30653.1  74 PTVKTEEQHKIDEALKEKAKNNSASSSSSSSSSSSSSSSKSSsKKFQVKFDSVWKRRFRPLPEA 137
                 55678888888999999999888888887777776666665515677788899*****999965 PP

>> DUF4400  Domain of unknown function (DUF4400)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.3   0.00041      0.66      18     104 ..      46     127 ..      35     131 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00041
     DUF4400  18 lgylsaeftrslllgepaaetaterantayewlfvksGllewlqalkqsasssgtnslaksvsegrefsaalselvasleeyleaav 104
                 + +l+ + + +ll   +a+++a+era++ +  + ++  + e+l++ ++ +s+s+ +s ++s s     s+ +++ +++++ ++++++
  CCE30653.1  46 IHQLNMRLSVALLRDPEAERRAKERAEAPTVKTEEQHKIDEALKEKAKNNSASSSSSSSSSSS-----SSSSKSSSKKFQVKFDSVW 127
                 567888888888888889999999999999999999999999998777766666555322222.....3333444555666666665 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.7   0.00052      0.86     233     271 ..      77     169 ..      45     222 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00052
  Presenilin 233 aeseeeeeaekkkeeasesskeeeseeesseksaqsse..........................................................s 271
                 +++e+++  e+ ke+a+++s++++s+++ss++s    +                                                          +
  CCE30653.1  77 KTEEQHKIDEALKEKAKNNSASSSSSSSSSSSS----SsskssskkfqvkfdsvwkrrfrplpeakavdlfadvigdafilgvacalityeswkalQ 169
                 111111111111111111111111111111111....011223345667777777777888888888888888888888888877777777776662 PP

>> Kre28  Spindle pole body component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.4     0.035        57     233     281 ..      83     132 ..      65     145 .. 0.52
   2 ?    8.3   0.7   0.00062         1     214     264 ..     161     214 ..     159     221 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.035
       Kre28 233 eeldrLkkekkeleevkkksknkeek.deevlenvkslnlLiklWkkkfi 281
                 +  + Lk++ k+ ++ + +s  +++   +  +   k    ++++Wk++f 
  CCE30653.1  83 KIDEALKEKAKNNSASSSSSSSSSSSsSSSKSSSKKFQVKFDSVWKRRFR 132
                 22333444444444433333333333222223333333469999**9997 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00062
       Kre28 214 tYeeWkslqk...slqekeelkeeldrLkkekkeleevkkksknkeekdeevle 264
                 tYe+Wk lqk   ++q+   l e+ + ++++ +el+e ++ ++++ ek e +l 
  CCE30653.1 161 TYESWKALQKpdvNKQRMDDLSERVEAIRRREAELSEAEEAQRQRFEKLEAALR 214
                 8*******9833346666778888888889999999999999998887665555 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.6     0.001       1.7    1191    1249 ..      57     114 ..      14     134 .. 0.37

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.001
       GREB1 1191 vtseeeeseeske.kekeslsketesqlsleaseqkealdakasskssssssssssassP 1249
                  +  + e+ +++ke  e  ++++e+++++ +     ++a +++ass+ssssssssss+s+ 
  CCE30653.1   57 LLRDPEAERRAKErAEAPTVKTEEQHKIDEALK--EKAKNNSASSSSSSSSSSSSSSSKS 114 
                  222222222222203333333333333333222..2222222222222222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2702  (0.150706); expected 358.6 (0.02)
Passed bias filter:                     1079  (0.0601818); expected 358.6 (0.02)
Passed Vit filter:                       176  (0.0098165); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 1652.16
//
Query:       CCE30654.1  [L=1028]
Description: related to protein kinase CDC5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-68  229.9   0.0    4.8e-68  229.4   0.0    1.2  1  Pkinase         Protein kinase domain
      8e-40  136.8   0.0    1.1e-39  136.3   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    1.5e-07   31.5   0.0    0.00023   21.3   0.0    2.7  2  POLO_box        POLO box duplicated region
    9.1e-06   25.2   0.0    3.2e-05   23.4   0.0    1.8  2  Kinase-like     Kinase-like
     0.0013   18.1   0.0     0.0024   17.3   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.016   15.1   0.3       0.04   13.8   0.3    1.6  1  Sushi_2         Beta-2-glycoprotein-1 fifth domain
      0.031   13.1   0.1      0.031   13.1   0.1    2.1  2  Pkinase_fungal  Fungal protein kinase
      0.091   11.7   0.0        0.2   10.6   0.0    1.5  1  Haspin_kinase   Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.4   0.0   2.1e-71   4.8e-68       1     264 []      71     332 ..      71     332 .. 0.91

  Alignments for each domain:
  == domain 1  score: 229.4 bits;  conditional E-value: 2.1e-71
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 y++ + lG+G+f+ +y++ +++t++++A+K++k +   k++ +k+++E++i+ k+kh+niv+++++f+ ++  +lvle++++g+l+d+++r++ l+e e
  CCE30654.1  71 YHVGKLLGKGGFAICYSGQHAATRQKYALKIVKCRMPPKME-QKFQTELQIHSKMKHKNIVQFFRAFTFNQCTFLVLELCNNGSLMDMVKRRKGLTEPE 168
                 78999****************************99888877.59******************************************************* PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvl..keneyskkvDvWslGvilyell 191
                 ++++  qi+ +++y+H kgiiHrDlK  Ni++d++ + Ki+DFGla+ + ++ +      t+ +gt++Y+APE+l  +++++++ vD+WslG+i++ +l
  CCE30654.1 169 VRFYSVQIAGAIKYMHGKGIIHRDLKMGNIFLDSRMNAKIGDFGLAALVVTGRDmqtirRTTLCGTPNYIAPEILqkGKKGHDHMVDIWSLGIIMFAML 267
                 ***************************************************999999999***************8777999***************** PP

                 HSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 192 tgkppfsgekgkekvekeldqlekilkilg.etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 t kppf++++++e +++  ++        + e+  +   ++ is+eakdl+ ++l+ d  +R+  +e+++hp++
  CCE30654.1 268 TSKPPFQSSTTDEIYRRARER--------DyEWPASATSHKFISQEAKDLVADMLQ-DADSRPEPDEIIRHPFF 332
                 *******66666644444433........11333445555666************7.7899************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   0.0   5.1e-43   1.1e-39       3     254 ..      73     325 ..      71     329 .. 0.87

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 5.1e-43
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  +gk lG+G f+  ++g+       +++k a+K++k ++  + ++++ +e++i +k+kh+niv++  + t ++ +++v+e++++G+L ++++++  + l
   CCE30654.1  73 VGKLLGKGGFAICYSGQHA----ATRQKYALKIVKCRMPPKMEQKFQTELQIHSKMKHKNIVQFFRAFTFNQCTFLVLELCNNGSLMDMVKRR--KGL 164
                  6899************999....8999******************************************99********************98..99* PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET..TTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi..ekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvl 194
                  t  ++  +++q+A +++y++ k ++Hrdl   N++l++++ +ki+DfGLa  +   +d ++ ++++     +++apE+l+++k    +  D+Ws G++
   CCE30654.1 165 TEPEVRFYSVQIAGAIKYMHGKGIIHRDLKMGNIFLDSRMNAKIGDFGLAALVvtGRDMQTIRRTTLCGTPNYIAPEILQKGKkgHDHMVDIWSLGII 262
                  ***************************************************994333444466667777899*********99889999********* PP

                  HHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHH...T-SSGGGS--HHH CS
  Pkinase_Tyr 195 lwEiftlgespypglkneevlekl.kegkrlekpekcpeelyelmkkc...weedpeeRptfse 254
                  ++ ++t ++ p+++ ++ e++++  +++++ ++ ++ ++ + +  k+    + +d+++Rp+  e
   CCE30654.1 263 MFAMLT-SKPPFQSSTTDEIYRRArERDYEWPASATSHKFISQEAKDLvadMLQDADSRPEPDE 325
                  ******.9**************997888888888777666654433320003356666666555 PP

>> POLO_box  POLO box duplicated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0026       5.8       1      20 [.     679     698 ..     679     701 .. 0.87
   2 !   21.3   0.0     1e-07   0.00023       9      37 ..     850     880 ..     848     932 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0026
                 CTTSEEEEEETTS-EEEEET CS
    POLO_box   1 stkygigyqLsdgtvgVnFn 20 
                 ++k g+gy L+dg+vg + +
  CCE30654.1 679 TNKFGLGYILNDGSVGCVLR 698
                 6999***********97655 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 1e-07
                 EETTS-EEEEETTTEEEEEETTT..TEEEEE CS
    POLO_box   9 qLsdgtvgVnFnDhtkiilspdg..kavtyi 37 
                  ++dg +++nF Dhtki+l + g  +++ + 
  CCE30654.1 850 VFCDGHFQFNFPDHTKIVLDATGtwCHFWHL 880
                 689****************998733444444 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.44     1e+03      16      47 ..      73     104 ..      68     131 .. 0.83
   2 !   23.4   0.0   1.4e-08   3.2e-05     150     257 ..     173     280 ..     113     320 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.44
  Kinase-like  16 rgellkkgdrsvvfevkdqetgeplavkvfll 47 
                  +g+ll+kg++ +++  +  +t ++ a+k+   
   CCE30654.1  73 VGKLLGKGGFAICYSGQHAATRQKYALKIVKC 104
                  6899********************99998654 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1.4e-08
  Kinase-like 150 TlqlirlaanLqakglvhgkftvdnllldekgglmlggft..aLvragtkvvl.seve....kgfaPpEllgsrggytrknktkmthkldaWqlGlvi 240
                   +q+   + +++ kg++h +++  n++ld +   ++g+f+  aLv  g  ++    +       +  pE+l +        k    h +d W lG+ +
   CCE30654.1 173 SVQIAGAIKYMHGKGIIHRDLKMGNIFLDSRMNAKIGDFGlaALVVTGRDMQTiRRTTlcgtPNYIAPEILQK-------GKKGHDHMVDIWSLGIIM 263
                  4777778899***************************996448999998888433333333334445555554.......667889************ PP

  Kinase-like 241 yriwclklPltlateea 257
                  + +   k P++  t + 
   CCE30654.1 264 FAMLTSKPPFQSSTTDE 280
                  *********98776543 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.1e-06    0.0024      94     155 ..     143     204 ..     128     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.1e-06
         Kdo  94 llterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                  l+ +l +  +L d++++ + l e   r    +++ +i+ +h  g+ H+dl + ni+l+ + 
  CCE30654.1 143 FLVLELCNNGSLMDMVKRRKGLTEPEVRFYSVQIAGAIKYMHGKGIIHRDLKMGNIFLDSRM 204
                 445557778899999998666777777778889*************************9987 PP

>> Sushi_2  Beta-2-glycoprotein-1 fifth domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   1.8e-05      0.04      17      60 ..     111     154 ..      95     158 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
     Sushi_2  17 gekvkiedllknrvlHgekvsffCknkekkCsytveaqCvdgkl 60 
                 ++k + e + + +++H+++v+ff   + ++C++ v + C++g+l
  CCE30654.1 111 EQKFQTELQIHSKMKHKNIVQFFRAFTFNQCTFLVLELCNNGSL 154
                 678888889999******************************98 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.4e-05     0.031     325     399 ..     185     258 ..     176     266 .. 0.79
   2 ?   -5.3   4.3       5.2   1.2e+04     205     205 ..     554     554 ..     428     627 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
  Pkinase_fungal 325 kagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses..garertGTleFmaievlkgee..HsyrhDLES 399
                      +gi+HrD  ++Ni +      ++ +  + D+ la  + + +  +   + +  GT++++a e+l++++  H ++ D+ S
      CCE30654.1 185 GKGIIHRDLKMGNIFLD-----SRMNAKIGDFGLAALVVTGRDMQtiRRTTLCGTPNYIAPEILQKGKkgHDHMVDIWS 258
                     689*************9.....6777888999999877654333322558899************86678*99999866 PP

  == domain 2  score: -5.3 bits;  conditional E-value: 5.2
  Pkinase_fungal 205 l 205
                     +
      CCE30654.1 554 I 554
                     1 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   8.7e-05       0.2     173     256 ..     126     216 ..      96     227 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.7e-05
  Haspin_kinase 173 kek.....pdfyseqqlflvlllkdkGtdLeevklkswkqalsi.fw..qivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRl 256
                    +++       f+ +q  flvl+l ++G+ ++ vk ++  +  ++ f+  qi+  ++    k    HRdL+++ni +d+ +n  + d+ l+ l
     CCE30654.1 126 HKNivqffRAFTFNQCTFLVLELCNNGSLMDMVKRRKGLTEPEVrFYsvQIAGAIKYMHGK-GIIHRDLKMGNIFLDSRMNAKIGDFGLAAL 216
                    3335444567777888889999999998888886655444444425533455555555555.577*********************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.45
# Mc/sec: 6825.81
//
Query:       CCE30655.1  [L=1245]
Description: CHS4 chitin synthase CHS-4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     5e-289  959.3   0.1   6.5e-289  958.9   0.1    1.1  1  Chitin_synth_2   Chitin synthase
    8.2e-14   52.0   3.4    2.5e-13   50.4   3.4    1.9  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    7.3e-11   42.4   0.1    6.8e-09   36.0   0.0    2.9  3  Glyco_tranf_2_3  Glycosyltransferase like family 2
     0.0002   20.9   0.0      0.002   17.7   0.0    2.1  2  Glyco_transf_21  Glycosyl transferase family 21
     0.0023   17.8   0.0      0.041   13.7   0.0    2.3  2  Glycos_transf_2  Glycosyl transferase family 2
     0.0061   16.7   0.0        4.6    7.5   0.0    2.9  2  Cyt-b5           Cytochrome b5-like Heme/Steroid binding doma


Domain annotation for each model (and alignments):
>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  958.9   0.1  2.2e-292  6.5e-289       2     527 .]     678    1202 ..     677    1202 .. 1.00

  Alignments for each domain:
  == domain 1  score: 958.9 bits;  conditional E-value: 2.2e-292
  Chitin_synth_2    2 stiiaksvaalqlidkrslefqlkfticlvtaysegeeglrttldslastdyddkrklllvvcdGlikGsGndkstPeivldllkdavspked 94  
                      s +i++s+++++++d+++++f+l++t+clvtayseg eg+rttlds+a+tdy++++k ++v+cdG+ikG+G+  stP+++l+++ d+ +p + 
      CCE30655.1  678 SGLIHDSLVPQPPSDWMPFGFPLAHTMCLVTAYSEGAEGIRTTLDSIAMTDYPNSHKAIVVICDGIIKGKGEAVSTPDVCLGMMRDHSTPPDM 770 
                      57899**************************************************************************************** PP

  Chitin_synth_2   95 veplsyvavaeGskrhnkakvyaGfyeyeddstvpeekqqrvPlivvvkvGtpseasekkPGnrGkrdsqiilmsflekvtfdermteleyel 187 
                      vep+syvava+Gskrhn+akvy+Gfy+y ++s +p+++qqrvP++++vk+Gtp+ea+++kPGnrGkrdsqiilmsfl+kv+fdermteleye+
      CCE30655.1  771 VEPFSYVAVASGSKRHNMAKVYCGFYDYGSNSRIPSQRQQRVPMMLIVKCGTPDEAEKSKPGNRGKRDSQIILMSFLQKVMFDERMTELEYEM 863 
                      ********************************************************************************************* PP

  Chitin_synth_2  188 fkkikkviGvspdfyeivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankkeswvtaiqvfeyyishhlskafesvfGsvtclPGc 280 
                      f+ ++kv+G+spd+yeivlmvdadtkv+pdslt++v+a+vkdp i+glcGetkiank++swvtaiqvfey+ishhl+k+fesvfG+vtclPGc
      CCE30655.1  864 FNGLWKVTGISPDYYEIVLMVDADTKVFPDSLTHMVSAMVKDPDIMGLCGETKIANKRDSWVTAIQVFEYFISHHLAKSFESVFGGVTCLPGC 956 
                      ********************************************************************************************* PP

  Chitin_synth_2  281 fslyrikaakgadgkwvPilvspeiveeysenvvdtlhkknllllGedrylttlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwins 373 
                      f++yrika+kg++++wvPil++p++ve+ysenvv+tlh+knl llGedrylttl+l+tfpkrk+vfvpqa+ckt++Pd+f+vllsqrrrwins
      CCE30655.1  957 FCMYRIKAPKGGQNYWVPILANPDVVEHYSENVVETLHEKNLYLLGEDRYLTTLMLRTFPKRKQVFVPQAVCKTTVPDNFMVLLSQRRRWINS 1049
                      ********************************************************************************************* PP

  Chitin_synth_2  374 tvhnllelvlvrdlcGtfcfsmrfvvfieligtvvlPvaiaftlylivasilksklvpviplvllaivlGlpailivltarkleyvawllvyl 466 
                      t+hnl+elvlvrdlcGtfcfsm+fvvfiel+gt+vlP+aiaft+y++++si++ ++ ++iplvlla++lGlp++li++ta++++yv+w+ +yl
      CCE30655.1 1050 TIHNLMELVLVRDLCGTFCFSMQFVVFIELVGTLVLPAAIAFTFYVVITSIIN-QPPQIIPLVLLALILGLPGLLILITAHSWSYVVWMFIYL 1141
                      ****************************************************9.9************************************** PP

  Chitin_synth_2  467 lalPifnfvlPlyafwhlddfswGetrvveGekkkkaageaegefdsskivlkrfeefere 527 
                      l+lPi+nfvlP+yafw++ddfswG+tr+++G+k kka  e+egefdsski++kr++efer+
      CCE30655.1 1142 LSLPIWNFVLPTYAFWKFDDFSWGDTRKTAGDKVKKAGIEYEGEFDSSKITMKRWAEFERD 1202
                      ***********************************************************96 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   3.4   8.5e-17   2.5e-13       1     192 [.     880    1155 ..     880    1159 .. 0.70

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 8.5e-17
  Glyco_trans_2_3    1 iilllDaDtvlppdclreiaaela.spevaivqgpvlvm.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalq..... 85  
                       i+l++DaDt + pd+l   ++ +  +p++  ++g + ++  + +w++ ++++++ ++h  + ++ + +g+v+ ++G  ++ r++a +     
       CCE30655.1  880 IVLMVDADTKVFPDSLTHMVSAMVkDPDIMGLCGETKIAnKRDSWVTAIQVFEYFISHHLAKSFESVFGGVTCLPGCFCMYRIKAPKggqny 971 
                       799****************9987768*********998747899**********99*****************************9999999 PP

  Glyco_trans_2_3   86 ................evg...gwdgdessvsEDfdmglrlqrkG..yrvrfvpeslvkekspltlraalrQrkRwayGc..eleklil... 151 
                                         +     + +   ++ED ++   ++r     + +fvp++++k+ +p++++  l Qr+Rw+     +l++l+l   
       CCE30655.1  972 wvpilanpdvvehyseN-VvetLHEKNLYLLGEDRYLTTLMLRTFpkRKQVFVPQAVCKTTVPDNFMVLLSQRRRWINSTihNLMELVLvrd 1062
                       99999888655555531.15655556677*****88865555554668899****************************6552222222556 PP

  Glyco_trans_2_3  152 ..................................................lvrllgylgsllw.salplhlallllfs.llalalvllllll 191 
                                                                         l   lg++g+l++  a ++++++++  + l+  ++ ++l+++
       CCE30655.1 1063 lcgtfcfsmqfvvfielvgtlvlpaaiaftfyvvitsiinqppqiiplvlLALILGLPGLLILiTAHSWSYVVWMFIYlLSLPIWNFVLPTY 1154
                       66666677777777777777666666666666666665555555444332111122222222212223444333333313445555555555 PP

  Glyco_trans_2_3  192 l 192 
                       +
       CCE30655.1 1155 A 1155
                       5 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.47   1.4e+03     105     132 ..     534     561 ..     526     609 .. 0.82
   2 ?    2.7   0.0     0.034     1e+02       3      57 ..     702     765 ..     699     792 .. 0.65
   3 !   36.0   0.0   2.3e-12   6.8e-09      88     228 ..     878    1047 ..     855    1049 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.47
  Glyco_tranf_2_3 105 lkrllqffltpkvgavgtpvfllnrstl 132
                      l+ + q+f ++k++a+ t++ +++r+++
       CCE30655.1 534 LALIFQWFISRKYAAAKTSQSSDRRKRA 561
                      77889999***************99987 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.034
  Glyco_tranf_2_3   3 dlavlVptfneed.vlgevlesllaqeypr..vevvvvv......desdaetlevaeelaaalp 57 
                      ++ +lV+++ e +  ++ +l+s++  +yp+    +vv++       ++  +t +v+ ++ ++++
       CCE30655.1 702 HTMCLVTAYSEGAeGIRTTLDSIAMTDYPNshKAIVVICdgiikgKGEAVSTPDVCLGMMRDHS 765
                      6789********967888******8889773333333334666444444555567766666665 PP

  == domain 3  score: 36.0 bits;  conditional E-value: 2.3e-12
  Glyco_tranf_2_3   88 sdlvllvDdDtvvePdtlkrllqffltpkvgavgtpvfl...lnrstlvsalgalefaerhlrflaarralg.vltlnGsgslirrevlkel 175 
                       +++vl+vD+Dt v Pd+l  ++ ++  ++++++g + ++   + r+++v+a + +e+ + h+   ++   +g v++l G ++++r +  k  
       CCE30655.1  878 YEIVLMVDADTKVFPDSLTHMVSAM-VKDPDIMGLCGETkiaNKRDSWVTAIQVFEYFISHHLAKSFESVFGgVTCLPGCFCMYRIKAPKGG 968 
                       679*******************999.56666666555552224599************9999999999999868***********9998888 PP

  Glyco_tranf_2_3  176 e.......................gldp.lflltdDy.elglrlrr.agfrtayvpgaavrevfpsslkayikqrnRwv 228 
                       +                       ++ + l ll++D   ++l+lr   + + ++vp+a++ ++ p+++  +  qr+Rw+
       CCE30655.1  969 QnywvpilanpdvvehysenvvetLHEKnLYLLGEDRyLTTLMLRTfPKRKQVFVPQAVCKTTVPDNFMVLLSQRRRWI 1047
                       899*******************9655558899999972556666668899999*************************7 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.6e-07     0.002      26     109 ..     873     961 ..     867     964 .. 0.74
   2 ?    0.6   0.0      0.11   3.4e+02     126     172 ..    1001    1047 ..     995    1048 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6.6e-07
  Glyco_transf_21  26 leaakydllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaaleaaflntl.agvlqa...klsglgfavGksmalr 109
                      ++   y+++++ D+d+ v pd L++++ a+ + p++  +++    ++++  + +  ++f ++  + ++++    ++g+ +  G ++++r
       CCE30655.1 873 ISPDYYEIVLMVDADTKVFPDSLTHMVSAMVKdPDIMGLCGETKIANKRDSWVTAIQVFEYFIsHHLAKSfesVFGGVTCLPGCFCMYR 961
                      556679*********************98865599888888666666666666666777654325555554435689999999999988 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.11
  Glyco_transf_21  126 LAeDyalgkllraa..GlkvvlspapiaqtsvprrsslrallaRqlrWa 172 
                       L eD  l++l+ +     k v++p+++++t vp+   +  ll++  rW 
       CCE30655.1 1001 LGEDRYLTTLMLRTfpKRKQVFVPQAVCKTTVPD--NFMVLLSQRRRWI 1047
                       78999999988888789999*************7..5777999999996 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.098   2.9e+02       4      37 ..     707     742 ..     705     745 .. 0.88
   2 !   13.7   0.0   1.4e-05     0.041      81     164 ..     879     963 ..     866     966 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.098
                      EEESS-.TTTHHHHHHHHHHH.GGCCEEEEEEEEES CS
  Glycos_transf_2   4 iptyNe.ektlletlesllaq.dpypdfeiivvDDg 37 
                      +++y e ++ ++ tl+s++   +p +++ i+v+ Dg
       CCE30655.1 707 VTAYSEgAEGIRTTLDSIAMTdYPNSHKAIVVICDG 742
                      899****************99888888888888776 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.4e-05
                      SEEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCC.HCCCCCCSTTCSTCCCEEEEH CS
  Glycos_transf_2  81 dyilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfker.krslkgnlsfeigsaallrre 164
                      +++l +DaD+ + pd l  +v a+ kd++ + l++  +i  ++d +  + +v+e  +  +  +   s +g++++  g+++++r +
       CCE30655.1 879 EIVLMVDADTKVFPDSLTHMVSAMVKDPDIMGLCGETKIANKRDSWVTAIQVFEYFISHHLAKsFESVFGGVTCLPGCFCMYRIK 963
                      699***********************77744444444555555555555554444444443330445677888888888888876 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0015       4.6      13      56 ..     291     349 ..     282     397 .. 0.77
   2 !    5.9   0.0    0.0046        14      16      71 ..     433     501 ..     423     504 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0015
                 EEEEEETTEEEECTTTCCCST...............TCSHHHHTTTTSBBHHHHHHTT..G CS
      Cyt-b5  13 dlwvairgkVYDvskflskhp...............GgesailkyaGkDateafksvv..h 56 
                   +++++g  YD+s   s+hp               +  ++ +k+aG+D + +f++v   +
  CCE30655.1 291 GGYMIFHGVAYDLS--TSHHPpaegiplrqdrlganVLYDLPEKHAGQDGSFLFQNVNghC 349
                 569***********..899*99999999999975555555667889999888888876644 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0046
                 EEETTEEEECT..TTCCCST............TCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHG.GEEE CS
      Cyt-b5  16 vairgkVYDvs..kflskhp............GgesailkyaGkDateafksvvhsekdaekllkk.ylvG 71 
                 +++ g+V D+s  ++ ++                +++ ++ +G+D+t+ f+s   +++ +++ l++  +vG
  CCE30655.1 433 IVYSGSVLDLSllNWFNESEisvpdrfkvmrdPESAVNKAIRGRDVTRMFQSS-GDKQ-IAQCLEEiTRVG 501
                 566666666665555555555566666666643445667889**********9.7666.567777778887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.47
# Mc/sec: 7930.51
//
Query:       CCE30656.1  [L=740]
Description: related to protoplast regeneration and killer toxin resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-40  135.7  29.2    1.1e-05   25.9   0.4    7.6  7  Sel1      Sel1 repeat
  ------ inclusion threshold ------
       0.12   12.6   0.8       0.67   10.2   0.1    2.5  2  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.4   6.3e-07    0.0056       1      38 []     438     475 ..     438     475 .. 0.87
   2 !   24.8   0.1   2.8e-09   2.5e-05       1      36 [.     476     509 ..     476     511 .. 0.94
   3 !   13.9   0.1   7.5e-06     0.067       2      36 ..     513     545 ..     512     547 .. 0.90
   4 !   25.9   0.4   1.2e-09   1.1e-05       3      38 .]     553     588 ..     551     588 .. 0.85
   5 !   22.1   0.0     2e-08   0.00018       1      38 []     589     625 ..     589     625 .. 0.94
   6 !   23.5   0.7   7.1e-09   6.4e-05       1      37 [.     626     662 ..     626     663 .. 0.89
   7 !   25.4   0.2   1.7e-09   1.6e-05       2      38 .]     665     699 ..     664     699 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.3e-07
        Sel1   1 aeAmyrLGmfylylnGlg.vpk.DpekAiewyekAAeqGd 38 
                 + A+y L+    y  Gl    k D+++A+ ++ +AA++G+
  CCE30656.1 438 PFAQYYLA--DGYASGLFsKGKeDYNSAFPLFVLAAKHGH 475
                 57******..888****644446****************9 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 2.8e-09
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeq 36 
                 ae++yr +  ++y++G g  kDp kA+++++ AA++
  CCE30656.1 476 AESAYRTA--LCYEFGWGCRKDPAKAVQFLRTAASK 509
                 79******..999*********************97 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 7.5e-06
        Sel1   2 eAmyrLGmfylylnGl.gvpkDpekAiewyekAAeq 36 
                  Am rLG   + l G+ g+++ ++++++w+++A e+
  CCE30656.1 513 GAMTRLG--KACLSGDlGEKR-YREGLKWLKLATEA 545
                 59*****..999****77999.***********986 PP

  == domain 4  score: 25.9 bits;  conditional E-value: 1.2e-09
        Sel1   3 AmyrLGmfylylnGl..gvpkDpekAiewyekAAeqGd 38 
                 A y+LG++y  ++G   ++ +D++ A e++ +AA++G+
  CCE30656.1 553 APYQLGCLY--ETGYgdDIFADESYAAELFTQAADLGH 588
                 77****555..7777535*******************9 PP

  == domain 5  score: 22.1 bits;  conditional E-value: 2e-08
        Sel1   1 aeAmyrLGmfylylnGlg.vpkDpekAiewyekAAeqGd 38 
                 +eA yr+G   +y++G+   p+Dp + +++y  AAe+++
  CCE30656.1 589 PEANYRMG--DAYEHGRLnCPRDPALSVHFYTGAAEKNH 625
                 79******..888****77*****************997 PP

  == domain 6  score: 23.5 bits;  conditional E-value: 7.1e-09
        Sel1   1 aeAmyrLGmfylylnGl.g.vpkDpekAiewyekAAeqG 37 
                 ++Am+ L+   +yl G    ++kD+e+A+ew +++Ae+G
  CCE30656.1 626 SAAMMGLC--AWYLVGAqPiLDKDEEEAYEWARRSAELG 662
                 68999999..555****857******************9 PP

  == domain 7  score: 25.4 bits;  conditional E-value: 1.7e-09
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                  A+y+L+  y+ + G g  +D+ +A  wy +AA++Gd
  CCE30656.1 665 KAQYALA--YFTEMGIGCRRDILEANVWYVRAADAGD 699
                 6******..777***********************97 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   7.5e-05      0.67      14      79 ..     469     539 ..     451     541 .. 0.84
   2 ?   -0.5   0.1      0.17   1.5e+03      34      50 ..     643     660 ..     620     673 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.5e-05
                 HHH.HHH--HHHHHHHHHHH....HHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHH..HT..T-HHHHHHHH CS
      ANAPC3  14 rllaaetespedayllAlcl....ylngqykrAyellrkaklnskslgcrylfAqcll..kL..kkyeeAiaaL 79 
                 +  aa++ ++e+ay  Alc+      +++  +A ++lr+a   ++++g+   +++++l  +L  k+y e+++ L
  CCE30656.1 469 L--AAKHGHAESAYRTALCYefgwGCRKDPAKAVQFLRTA-ASKRHPGAMTRLGKACLsgDLgeKRYREGLKWL 539
                 3..469999***********5444489*************.899999*******999988999999***99876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.17
                 HHTT-HHHHHHHHHCT.S CS
      ANAPC3  34 ylngqykrAyellrka.k 50 
                  l+++ ++Aye++r++ +
  CCE30656.1 643 ILDKDEEEAYEWARRSaE 660
                 567888999999999833 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       991  (0.0552736); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 5013.80
//
Query:       CCE30657.1  [L=565]
Description: probable calcium-binding protein precursor cnx1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.1e-165  550.0  17.3   2.6e-165  549.7  17.3    1.1  1  Calreticulin  Calreticulin family
  ------ inclusion threshold ------
        2.1    7.8  11.4      0.014   15.0   3.1    1.5  2  SseC          Secretion system effector C (SseC) like family


Domain annotation for each model (and alignments):
>> Calreticulin  Calreticulin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  549.7  17.3  2.9e-169  2.6e-165       1     367 []      46     416 ..      46     416 .. 0.99

  Alignments for each domain:
  == domain 1  score: 549.7 bits;  conditional E-value: 2.9e-169
  Calreticulin   1 fveqFeeeeelekrwikskakked.......eeakYkgkwsveepkklkglegdkgLvlkskakhhaisaklekpiklkkkdLvvqYevklqeglec 90 
                   f+eqF++  ++ekrw++s+akk+        ee+++ g+wsveep+k+kg++gdkgLv+k+ a+hhaisak++k+i++k k+LvvqYevklq+glec
    CCE30657.1  46 FLEQFTD--DWEKRWKPSHAKKDMqgsgkdeEEWAFVGEWSVEEPTKYKGMAGDKGLVVKNPAAHHAISAKFPKKIDNKGKTLVVQYEVKLQQGLEC 140
                   79****8..9**********9888899*99999**************************************************************** PP

  Calreticulin  91 ggayikLlseeeekdleefsdktpytimFGpdkcgstnkvhfilrkknpktgeieekhlkkppklkkdklthLytLilkpdntfeiridgkvvksgn 187
                   ggay+kLl++++  ++eefs++tpy imFGpdkcg+ nkvhfi+++knpktge+eekhl++pp++k+ k+t+LytLi++p+nt+ i+ +g++vk+g+
    CCE30657.1 141 GGAYMKLLRDNKALHQEEFSNTTPYVIMFGPDKCGHANKVHFIFNHKNPKTGEYEEKHLSSPPTAKIVKTTELYTLIVHPNNTYAIKQNGEEVKAGS 237
                   ************************************************************************************************* PP

  Calreticulin 188 lledfeppvnppkeidDpedkkPedWddrekipDpeavkPedwdekapekipdpeavkPedWledepelipdpeaekPedwdeeedgeweaplikNp 284
                   lledf+p+vnpp+eidDp+d+kP++W+d+++i+Dpea+kPedwde+ap +i d+ea++P+dWle+e ++i dpea+kP+dwd+eedg+w+ap+i+Np
    CCE30657.1 238 LLEDFTPAVNPPAEIDDPKDSKPDSWVDEARIADPEAKKPEDWDEDAPFEIIDDEATMPDDWLENEATTIADPEAQKPKDWDDEEDGDWIAPTIPNP 334
                   ************************************************************************************************* PP

  Calreticulin 285 kCeeasgCgkwkpplikNpkYkGkwkaplienpnYkGeWkprkipnpdyfedkkplkklepigaigfelwsmskdilfdniyi 367
                   kC+++sgCg+w++p++kNp+YkGkw+ap i+np+YkG W+prki+np++fedk+p + +ep+gaigfe+w+m++dilfdniyi
    CCE30657.1 335 KCADVSGCGPWTKPMKKNPDYKGKWTAPFIDNPAYKGPWAPRKIKNPAFFEDKHP-SYFEPMGAIGFEIWTMQSDILFDNIYI 416
                   *******************************************************.889***********************8 PP

>> SseC  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   1.3      0.99   8.8e+03     144     166 ..       5      27 ..       3      33 .. 0.55
   2 ?   15.0   3.1   1.6e-06     0.014     127     194 ..     486     557 ..     424     563 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.99
        SseC 144 avvaavvavgsaakgaaaavksg 166
                 a++aav+a+  a+++ a++v+++
  CCE30657.1   5 AAAAAVSAALLAGSAHADKVEES 27 
                 45555555555555555555555 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.6e-06
        SseC 127 dkaqlageivgavv.aavavvaavvavgsaakgaaaavksg...aaklaeavaeaigkaikkaaekagkeva 194
                   ++++ e++g+   +av+ va++va+ +++++a  avk++   a++ a+ v++++++a++  aeka +e+ 
  CCE30657.1 486 EAIKFVPEVAGGFAaIAVTFVALIVALLGLGGSAPPAVKETaaaAKGKAKEVKDKVAEAATTGAEKAKGEAT 557
                 6678888999887779************************98888888888888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3924.67
//
Query:       CCE30658.1  [L=215]
Description: uncharacterized protein CPUR_04507 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.13   11.8   4.6       0.18   11.3   4.6    1.2  1  VDE          VDE lipocalin domain
          4    6.5  15.0        4.6    6.3  15.0    1.1  1  SOG2         RAM signalling pathway protein
        4.3    7.2  10.3        4.7    7.0  10.3    1.1  1  SPX          SPX domain


Domain annotation for each model (and alignments):
>> VDE  VDE lipocalin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.6   2.9e-05      0.18      17      59 ..      22      66 ..      11      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.9e-05
         VDE 17 ladkdClkglvclakCkkdeqaCqikCgdly..enevldefleCa 59
                 ad++ + + +cl+kC  ++ +Cq +C+     +++++++ ++Ca
  CCE30658.1 22 SADPATASAAACLKKCAVGDVNCQSHCITVPspNEQQVNDTTKCA 66
                57999999*******************986533889999999998 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  15.0   0.00077       4.6     191     327 ..      51     190 ..       8     208 .. 0.46

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00077
        SOG2 191 lvssaesstesrassvtytart..RhagsfsaqdveqGaalt....plrsd.qipfnl..srsrrssssgnsaspaangaqsetsersasssg.vqssa 279
                  +s+ e++ + +++     +++   +   +++ d  qG  ++    +  s  +++  +  s ++ s+s + s+++++ + +s+ s+ ++ ++  +   a
  CCE30658.1  51 VPSPNEQQVNDTTKCAAACPQGsgSPEETQKYADCVQGCISKhyfdK--SGgTPQPTGgnSGNSGSGSGSSSSGSSSGAGTSD-SD-AHATATqTGAAA 145
                 34444444444444444333334488899999999999999987532..4434433333333333333333333333322222.22.222222233333 PP

        SOG2 280 sstPlgegstspp.galsrqslsttgststltsssksrsssrsnt.nasa 327
                 +s+   +gs+s + + + ++s  +     t++s+s+ ++s++s++  a++
  CCE30658.1 146 PSSSADSGSNSGSsSGSGSSSGDK-----TTDSGSQTSGSKTSSSpAATS 190
                 333333444443222222222222.....223333322222222211111 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  10.3   0.00079       4.7      73     133 ..     107     188 ..      22     202 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00079
         SPX  73 desgnsaadasssepkdeae.....................slprrsplsrssrssssygglvssppsansssssddssesn 133
                  +sgns + + ss++ ++                       s+ ++ ++s+ss+ s s +g +++++ +++s+s+ +ss++ 
  CCE30658.1 107 GNSGNSGSGSGSSSSGSSSGagtsdsdahatatqtgaaapsSSADSGSNSGSSSGSGSSSGDKTTDSGSQTSGSKTSSSPAA 188
                 2222222211111111111111111111111111112222233333333333333333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       993  (0.0553851); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 1575.03
//
Query:       CCE30659.1  [L=1124]
Description: uncharacterized protein CPUR_04508 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-14   52.4   0.0    1.2e-11   44.7   0.0    2.5  1  Lipase_3  Lipase (class 3)


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   6.5e-16   1.2e-11       1     138 [.     796     967 ..     796     971 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 6.5e-16
                 EEEE----------------EEE-HHHH-GTT-EEEHHHHHHHH...S-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS... CS
    Lipase_3   1 vvafRGtesakdwltdldfslteakellekeggkvhsgfleaye...eslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengene... 93 
                 v+a RGt   +d+l+dl++   ++     +  ++vh+g   +++   +     vl +lk+ l ++p+y +v++GHSLGg++ +L++++l e + +    
  CCE30659.1 796 VFACRGTLGFEDVLADLTCDYDDLLWR--GRAYRVHKGVHASAKrllFGGDGRVLVTLKEALLEFPDYGLVLCGHSLGGGVTSLLGVMLSEPNATGpgf 892
                 6899*************9998887665..469************766677889**************************************9988899* PP

                 ..................................---EEEEEES----B-HHHHHHHHT-TTEEEEEEEETT--GGG-S CS
    Lipase_3  94 ..................................kkkvtvvtfGqPrvgnkefaklvdsqlnkkvlrvvntnDivPrlp 138
                                                    +++ v+++G P +++ +++kl +      +++vv+  DivP l+
  CCE30659.1 893 visaepstakhphyqgqqqqqqqqhrfsnvhlpqGRRIHVYAYGPPGIMSPSLRKLTR---GL-ITTVVHGSDIVPYLS 967
                 *********************************99**********************9...55.889*********886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.46
# Mc/sec: 7386.42
//
Query:       CCE30660.1  [L=914]
Description: uncharacterized protein CPUR_04509 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-20   73.9   0.1    4.2e-20   72.8   0.1    1.5  1  Helitron_like_N  Helitron helicase-like domain at N-terminus


Domain annotation for each model (and alignments):
>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.1   2.4e-24   4.2e-20       6     130 ..     763     883 ..     755     905 .. 0.85

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 2.4e-24
  Helitron_like_N   6 Lq.gRfaehsrflflafnllqqyvvdayakveeerlsflrknqkelraesltgeeLkealeeetedeelkllgklvilpssvpgsprymqekrq 98 
                      L  gRfa+h++f++++ n+  +       ++ +++ ++l+++q+e    ++t e+L+e+++++ ++e+++ll+++++++ ++ g+++y+  kr+
       CCE30660.1 763 LSdGRFAQHPKFRYVVYNMWIRT------QTHKRSTFYLKRDQRE----DITIENLREMFNQD-SEEAQALLKSITRYAGNMLGTRPYWLGKRN 845
                      5259*****************77......9999999999997776....468888*******9.55558************************* PP

  Helitron_like_N  99 dlmaivrelgkPdlFiTltcndk.wpeikeel.....r 130
                      +l a+vr lg+P+lF+T++++d  w+++ + +     +
       CCE30660.1 846 ELAAMVRGLGCPSLFMTFSAADLhWESLAKLMpnyeaW 883
                      ***********************999999988554441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (914 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 6521.31
//
Query:       CCE30661.1  [L=321]
Description: uncharacterized protein CPUR_04510 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2501.61
//
Query:       CCE30662.1  [L=67]
Description: uncharacterized protein CPUR_04511 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 507.25
//
Query:       CCE30663.1  [L=209]
Description: uncharacterized protein CPUR_04512 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-23   82.6  10.5    2.4e-13   50.7   5.4    2.1  2  DUF2052   Coiled-coil domain containing protein (DUF2052)


Domain annotation for each model (and alignments):
>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.2   5.7e-13     1e-08       1      76 [.      32     103 ..      32     114 .. 0.87
   2 !   50.7   5.4   1.3e-17   2.4e-13     124     198 .]     119     191 ..      96     191 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 5.7e-13
     DUF2052   1 NrRyaaLqrlleegeYFseeemrerePlLYeqlvGqflteeerk.kardksdskeeslseiLlrreeeaaaaerlea 76 
                 NrR+a+L+r   +++YF + + + ++P+LYe l+   +t++er+ +  ++++   +sl++ L r e +  a ++  a
  CCE30663.1  32 NRRRAYLER---HPSYFDSVDDESADPVLYECLIKHHQTPQERQaEGLTRGYA--RSLEADLARGESRLSALATQAA 103
                 9********...******************************98777777777..9********9999877665544 PP

  == domain 2  score: 50.7 bits;  conditional E-value: 1.3e-17
     DUF2052 124 eekeeeeekeeeaeaevlseeereelreeFtsimrerFLsGeDeefDYsavDeneelDdlkeaerDaedkYFdee 198
                 +++++ +  +++ e+e ++++ +e+ r+ + ++++erF+ G De+f Y +vDene+lD   ea+r++e+k+F+ee
  CCE30663.1 119 RSSGRSSGVDRDWEEEGKQAPTKEQGRALWREFLTERFIHGGDEDFRYGDVDENESLDG--EARREEEEKWFEEE 191
                 5667777788888999999999*************************************..************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1584.29
//
Query:       CCE30664.1  [L=248]
Description: related to caffeoyl-coa o-methyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-34  117.2   0.0    8.1e-34  116.7   0.0    1.2  1  Methyltransf_3   O-methyltransferase
    6.4e-12   45.7   0.0    8.3e-12   45.3   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      1e-10   41.6   0.0    1.3e-10   41.3   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    1.5e-09   38.8   0.0      3e-09   37.9   0.0    1.5  1  Methyltransf_24  Methyltransferase domain
    1.5e-07   32.0   0.0    2.8e-07   31.2   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    0.00019   22.1   0.0    0.00039   21.1   0.0    1.6  2  Methyltransf_12  Methyltransferase domain
    0.00077   20.1   0.0     0.0029   18.2   0.0    1.9  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.013   14.6   0.0      0.016   14.3   0.0    1.2  1  Fibrillarin      Fibrillarin


Domain annotation for each model (and alignments):
>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.0   3.6e-37   8.1e-34      14     210 ..      34     245 ..      23     247 .. 0.83

  Alignments for each domain:
  == domain 1  score: 116.7 bits;  conditional E-value: 3.6e-37
                     HHHHHHTTTST.TGGGS--HHHHHHHHHHHHHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H CS
  Methyltransf_3  14 keLreatakktdlsemevsvdegqfLslLvklvnakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekieliegda 108
                      e  e   k +  +  ++s  e+++L  L +l++akrvleiG f G+s+ a a a+  DG+++ +++ +e++  a++ + + g+++  e+ +gda
      CCE30664.1  34 IEYHEWVQKTQPCAFFTISLLESRMLLWLARLIGAKRVLEIGAFVGFSVAAWAEAVGGDGRVTGLEQSPEYARFAREQLARYGWKN-AEILVGDA 127
                     5556666666669999********************************************************************75.79****** PP

                     HHHHHHHHTSSS---EEEEEE-S-GGGHHHHHHHHHH.........TEEEEEEEEEE-TTGGGGGG-SS--SH......HHHH.........HHH CS
  Methyltransf_3 109 lkvLeelvkdkklpefDfifvDaDkssyvnyyeklle.........LvkvGgliaiDntLWeGkvveeddeea......kalreyr....avlle 184
                     l+++ +l  +++   +D+if+Da ks+y++y + +le         +++ Ggli+ Dn+L eG v++  d+++      k  +++     a l e
      CCE30664.1 128 LETMSRLELQEP---YDIIFIDAKKSEYPEYLNSILEksqpgqknrMLRPGGLIVGDNVLREGLVADASDKNPatetvpKETVNWDstsiARLDE 219
                     ***999998885...******************999655555555589******************99554431111112222222111145779 PP

                     HHHHHTT-TTEEEEEE-SBT-EEEEE CS
  Methyltransf_3 185 lnkklaeDprveisllsvgDGitLvr 210
                     +nk++ e+pr+e +ll++ DG+ + r
      CCE30664.1 220 FNKAMHENPRIEAVLLPLFDGLAIGR 245
                     *********************98765 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   3.7e-15   8.3e-12      46     164 ..      39     161 ..       7     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 3.7e-15
                 S-EEEETTEEE--HHHHHHHHHHTT.--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES-GGGTT...GGG CS
        PCMT  46 aplsigynatiSaphmvalalelle.lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDGrkGy...eek 140
                  +++ +  a      + +++l +l  l   +rvLe+G+  G+  a  a+ vg +grv ++e+++e ++ a+++l + + +n  + vgD  + +   e +
  CCE30664.1  39 WVQKTQPCAFFTISLLESRMLLWLArLIGAKRVLEIGAFVGFSVAAWAEAVGGDGRVTGLEQSPEYARFAREQLARYGWKNAEILVGDALETMsrlELQ 137
                 5555555555555577889999999999************************************************************98776111557 PP

                 -SEEEEEESSBBSS--HHHHHTEE CS
        PCMT 141 aPYdaihvgaaapeiPealidQLk 164
                  PYd i++ a   e Pe l   L+
  CCE30664.1 138 EPYDIIFIDAKKSEYPEYLNSILE 161
                 9***************99876665 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   5.9e-14   1.3e-10       4     112 ..      68     183 ..      66     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 5.9e-14
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsn.......evlnala 88 
                      ++rvl++G+  G+ + ++ae +g +++v+G++ s+e  ++Are +++ g +n+e  +gd+ e ++ l l+ e++D+i+ +       e ln + 
       CCE30664.1  68 AKRVLEIGAFVGFSVAAWAEAVGGDGRVTGLEQSPEYARFAREQLARYGWKNAEILVGDALEtMSRLeLQ-EPYDIIFIDakkseypEYLNSIL 160
                      689**************************************************************99999.9********66666666669999 PP

  Methyltransf_31  89 dpdkileeiervlkpggilliedp 112
                      ++ +  ++  r l+pgg ++ +++
       CCE30664.1 161 EKSQPGQK-NRMLRPGGLIVGDNV 183
                      99999999.9*****999985544 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   1.3e-12     3e-09       1     105 [.      72     182 ..      72     183 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1.3e-12
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare...aglddrvrlikadseealasla.agsiDllfiDgghaa.eavled.l 88 
                      +EiG++ G+s +++++a+   g  r++ ++  p   e+a++are    +  ++++++++d+ e++++l+ ++++D++fiD+  +   ++l+  l
       CCE30664.1  72 LEIGAFVGFSVAAWAEAVGGDG--RVTGLEQSP---EYARFAREqlaRYGWKNAEILVGDALETMSRLElQEPYDIIFIDAKKSEyPEYLNSiL 160
                      7****************98776..7********...99999998554444455*************99999*********97553244444324 PP

  Methyltransf_24  89 eal.....lprlapggvvlfdD 105
                      e        ++l+pgg+++ d+
       CCE30664.1 161 EKSqpgqkNRMLRPGGLIVGDN 182
                      5553333346999999999997 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.2e-10   2.8e-07       1      75 [.      71     151 ..      71     176 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.2e-10
                      EEEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBC.CGBS..SSTTTEEEEEEEST.GG CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeegl.nvefvqgda.edlp..fedgsfDlvvssga.lh 75 
                      vL++G+  G  ++a+a+++ g+++vtg++ s+e+ + are++++ g+ n+e+++gda e+++  + ++ +D++++     +
       CCE30664.1  71 VLEIGAFVGFSVAAWAEAVgGDGRVTGLEQSPEYARFAREQLARYGWkNAEILVGDAlETMSrlELQEPYDIIFIDAKkSE 151
                      8******************65***********************999**********64455444677******9443333 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.8e-07   0.00039       1      98 [.      72     177 ..      72     178 .. 0.86
   2 ?   -3.4   0.0       7.5   1.7e+04      34      63 ..     190     219 ..     186     223 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.8e-07
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvas.nvlhhlkdirevld.... 87 
                      LeiG+ +G  ++a++e+   d ++tg++ sp+    a+e+la+++ +n++ +  +al+  ++ +  + +D++++     ++ + ++++l+    
       CCE30664.1  72 LEIGAFVGFSVAAWAEAVgGDGRVTGLEQSPEYARFAREQLARYGWKNAEILVGDALETMSRLELqEPYDIIFIDaKKSEYPEYLNSILEksqp 165
                      8*****************9**************************999999999999988877778******9765777777888888876666 PP

  Methyltransf_12  88 .nirklLkpgGr 98 
                       +  ++L+pgG 
       CCE30664.1 166 gQKNRMLRPGGL 177
                      666788888876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.5
  Methyltransf_12  34 edakeklakrennnnnnvelealdlldldg 63 
                      +da+ k  + e    + v+++ ++++ ld+
       CCE30664.1 190 ADASDKNPATETVPKETVNWDSTSIARLDE 219
                      567777777777777777777777766665 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.3e-06    0.0029       1      95 [.      72     179 ..      72     180 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-06
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCC....TSS-TT-EEEEEEES-CCC-.CCHHHHHHHH. CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl.kvefvvadaek....lpfednsfDlvvssevlhhv.edpekalkei. 84 
                      L++G+  G  ++a+a+++   +rv+g++ s+e  + a+e+  + g  + e++v+da +    l +++  +D++++        e ++++l++  
       CCE30664.1  72 LEIGAFVGFSVAAWAEAVggdGRVTGLEQSPEYARFAREQLARYGWkNAEILVGDALEtmsrLELQE-PYDIIFIDAKKSEYpEYLNSILEKSq 164
                      7899999********77779***********************9999999*9999986432355555.99999998855555466666666542 PP

                      ....HHHEEEEEEEE CS
  Methyltransf_11  85 ....aRvLkpgGllv 95 
                           R+L+pgGl+v
       CCE30664.1 165 pgqkNRMLRPGGLIV 179
                      222268888888775 PP

>> Fibrillarin  Fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.3e-06     0.016      71     152 ..      68     151 ..       9     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.3e-06
                  TSEEEEESTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH.HHHT.TSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTT CS
  Fibrillarin  71 gskvLYlGaasGttvsHvsDivgeegvvyavefsprvlreli.evak.kRknivPileDArkPekYralvekvDvifaDvaqpd 152
                   ++vL +Ga  G +v+  ++ vg +g+v ++e+sp   r    ++a+   kn   +++DA + ++  +l e  D+if D  +++
   CCE30664.1  68 AKRVLEIGAFVGFSVAAWAEAVGGDGRVTGLEQSPEYARFAReQLARyGWKNAEILVGDALETMSRLELQEPYDIIFIDAKKSE 151
                  579********************************988855423333146899999***********************88776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1832.43
//
Query:       CCE30665.1  [L=943]
Description: related to response regulator Mcs4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-21   76.8   0.0    2.5e-15   56.6   0.0    2.3  2  Response_reg  Response regulator receiver domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   1.4e-19   2.5e-15       1      80 [.     744     822 ..     744     831 .. 0.93
   2 !   17.9   0.0   1.4e-07    0.0025      68     106 ..     847     885 ..     835     891 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 1.4e-19
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESS CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltah 80 
                   vliv+D+p++++ll+ ++++ ++ + ++a +g++a++ +++  ++l+l+Di++p m+Gl++++eir+ ++   + +++++
    CCE30665.1 744 VLIVEDNPINLKLLEAFVKKLKV-RWQTAMNGRDAVDRWRTGGFHLVLMDIQLPVMNGLDATREIRRLERVNSIGVFSST 822
                   8**********************.********************************************988888787765 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.4e-07
                   CTTTSEEEEEESSTSHHHHHHHHHCTESEEEESSG-HHH CS
  Response_reg  68 edpelpviiltahseeedavealkagaddflsKpfdpee 106
                    ++ + +++lta s ++d++eal ag +dfl+Kp++   
    CCE30665.1 847 FKSPVIIVALTASSLQSDRHEALAAGCNDFLTKPVNFVW 885
                   44667889999***********************98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (943 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       871  (0.0485805); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.41
# Mc/sec: 6846.86
//
Query:       CCE30666.1  [L=279]
Description: uncharacterized protein CPUR_04515 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-48  164.8   3.9    3.5e-48  164.0   3.9    1.4  1  Bot1p           Eukaryotic mitochondrial regulator protein
  ------ inclusion threshold ------
       0.11   12.4   4.3       0.23   11.4   4.3    1.5  1  DNA_pol3_a_NII  DNA polymerase III polC-type N-terminus II


Domain annotation for each model (and alignments):
>> Bot1p  Eukaryotic mitochondrial regulator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0   3.9   3.9e-52   3.5e-48       2     162 ..      35     199 ..      34     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 164.0 bits;  conditional E-value: 3.9e-52
       Bot1p   2 lqPFPlNpsfrsepvlseelreeIyeevakkgksvrevSvkygvkikRveAivrLkelekkwknkgkpllkkysralekmlPl...napekkakeenln 97 
                 +qPFP+Np frs+pvl+e+++e I+e+v+k+g  +++vS+++gv+++R++A+vrLk+lek+w + gk+l+++y++a+  mlP    ++ e++ ++e++n
  CCE30666.1  35 DQPFPQNPLFRSQPVLDEQTKELIWEKVMKRGEALKAVSAEMGVDVRRIAAVVRLKQLEKQWVQDGKKLATPYAKAVMSMLPKtsfREGEENVPHEPIN 133
                 79********************************************************************************9999999********** PP

       Bot1p  98 dipvpsktassrfvpvaesepFtpvdaakvlel..epaaetlekaeevkeekesaeevteeeakkkk 162
                 +++v++ t +++f+pv+es++Ft+ daa++++    + ++++ ++  ++ ek +   v++ee+++ k
  CCE30666.1 134 ELHVHKWTLQQLFLPVGESRHFTREDAARAFNErmLSVDARSPQRFLINLEKDLMRGVSKEESQQ-K 199
                 *******************************9955556666666666777888888888777444.3 PP

>> DNA_pol3_a_NII  DNA polymerase III polC-type N-terminus II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.3   2.6e-05      0.23      76     111 ..     191     226 ..     177     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.6e-05
  DNA_pol3_a_NII  76 esseeeieefeeqkeeeeekaikeaieakekkeaek 111
                     +s+ee++++f ++ + ee+k++++ +++kek+e++ 
      CCE30666.1 191 VSKEESQQKFLTRVQTEERKFAEKLAKEKEKEEQMT 226
                     5789999**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1171  (0.0653132); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2332.21
//
Query:       CCE30667.1  [L=329]
Description: uncharacterized protein CPUR_04516 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-46  158.5   0.0    3.1e-46  158.2   0.0    1.0  1  Y_phosphatase3  Tyrosine phosphatase family
     0.0048   16.5   0.0     0.0073   15.9   0.0    1.2  1  Y_phosphatase   Protein-tyrosine phosphatase
     0.0048   16.5   0.0      0.028   14.0   0.0    2.0  2  Y_phosphatase2  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.2   0.0   5.1e-50   3.1e-46       6     231 ..      11     270 ..       7     271 .. 0.86

  Alignments for each domain:
  == domain 1  score: 158.2 bits;  conditional E-value: 5.1e-50
  Y_phosphatase3   6 vsNfRDlGg..........yptadgrkvrpgvlyRsaelsklteadlakLadlgirtviDLRspeErea..eap.........legaryvhlpv. 78 
                     ++N+RDlG            p+++  ++r g+lyR+a+ s    + +  L +l i++v+DLRs+ E+++              +++  ++h+pv 
      CCE30667.1  11 LPNLRDLGNvpippphpasSPSSSRLQTRAGLLYRAAAPST---SAVPSLLALSIAHVFDLRSEVEIDRqgG-HflaeiytsaPPALLRHHVPVf 101
                     68*******998888887666666667**********9996...5699******************866452.145666665444559999999* PP

  Y_phosphatase3  79 ........e.eaaeeekeeeeaeetlaelYrelle.sakkayrkvfealadee..pvlfHCtaGKDRTGvlaalllsllGvdeedivaDYlltne 161
                             + +++     ++++ + + ++Yr +l+  a++a++ ++++la+e+  p+l+ CtaGKDRTG+laa++l+l+Gvd+e+i+ +Y l++e
      CCE30667.1 102 llidytpqAvAIRYLDYGAADTIAGFVSAYRGILRaGAERAFAPILRHLAQENpsPCLVYCTAGKDRTGLLAAIVLALCGVDDETIAWEYGLSEE 196
                     **99987523446677788999999**********77889***********5569**************************************** PP

  Y_phosphatase3 162 yleelrerlkakleeellaea....leellsvrpeyleaaldaieekygsvegYlreelglseeeiealrerll 231
                     +l++l+ ++  +l ++++a a    + ++ls+rpe++ a+l+ i+e+yg+ve+Y+r++++ls+++ie++r++++
      CCE30667.1 197 GLAPLKPAMIMELLATQSAVAdesgAIRMLSSRPECMLATLQVIREEYGGVEEYVRTHCKLSQDDIEQIRTNFI 270
                     ***988888676666644444677999********************************************986 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.2e-06    0.0073     160     199 ..     148     184 ..     131     191 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-06
                    HHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHHHHHHH CS
  Y_phosphatase 160 rkvekskeaksgpvvVhCsaGvgRtgtfvaldillqqlea 199
                    r +    +++ +p++V C aG  Rtg ++a+ ++l+ +++
     CCE30667.1 148 RHLA---QENPSPCLVYCTAGKDRTGLLAAIVLALCGVDD 184
                    4444...4559**********************9998776 PP

>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0     0.098   5.8e+02      13      42 ..      42      71 ..      34      83 .. 0.85
   2 !   14.0   0.0   4.7e-06     0.028      82     129 ..     146     193 ..     113     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.098
                    TEEEESS--HHHHHHHHHCT-SEEEE-SSS CS
  Y_phosphatase2 13 elyrssyprasnfsflksLkLktiislspe 42
                     lyr++ p+ s  + l  L++  +  l+ e
      CCE30667.1 42 LLYRAAAPSTSAVPSLLALSIAHVFDLRSE 71
                    58********99999999999988888776 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 4.7e-06
                     HHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHH CS
  Y_phosphatase2  82 alklllnkenypvllhckrGkhrtglvigclRklqkWslasilnEyrr 129
                     +l+ l +++  p+l+ c+ Gk rtgl+ +++ +l + +   i  Ey +
      CCE30667.1 146 ILRHLAQENPSPCLVYCTAGKDRTGLLAAIVLALCGVDDETIAWEYGL 193
                     56777788889*******************999988888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2341.85
//
Query:       CCE30668.1  [L=651]
Description: related to acid sphingomyelinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-12   46.7   1.0    1.1e-11   45.6   1.0    1.5  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   1.0   6.1e-16   1.1e-11       2     203 ..     173     435 ..     172     436 .. 0.61

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 6.1e-16
                  EEEEEESBTB.......................................TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHl.......................................algggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaal 60 
                  ++++++DlH+                                       +  +g  ++  ++ ++l +  ++++ +++GD+vdr ++++ ++ + + l
   CCE30668.1 173 KVIHFSDLHIdplykvgavgdcsnpflccrnvsdhtktpagpfgyhkkcDTSYGLEESMYRATKKL-A-GDANYTIFTGDIVDREVWHTTIESNTKSL 268
                  89**********************************777777766644422222222222333333.2.57899999********9999777777666 PP

                  HHH.......TSEEEEEC-TTS...........................CHHHHHHHHHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESEC CS
  Metallophos  61 vky.......pipvylllGNHe...........................gfeeellnkygylgifsepwrsdaevfnnlplaslgsgslkvlllhGgs 124
                   +          ++y++ GNH+                           +++++ +  + ++ ++ + + +  ++  ++ +++          ++ + 
   CCE30668.1 269 HEAygrmkkvFPHFYPAVGNHDsspansfptagetnktfeikwlygllsTLWQGTEVGQVESDHYRGRYSY-RDTQRGIRVIG----------INTN- 354
                  66677755542345********8888888777554333333333333332222222222222222111111.23333333333..........2222. PP

                  EEETHHHHHHHHHHHSCHHHHCC..HHHHHH..HHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHH..HHHTTESEEEEESSSS CS
  Metallophos 125 pellvsldklgslnleleapepg..dewlkd..lekrekadwvivlgHsplyrgsgylfgdealedl..lkkygvdlvisGHtHv 203
                     l+   +l  l +e  +p+p+   +wl +    ++  ++ v ++gH+p+ +    +++++ +  +   + + + + ++GHtH 
   CCE30668.1 355 ---LYYYLNLW-LYKESMSPDPDgqLKWLVQelAAAEQVGEKVWIIGHMPMGDADVIQHSSNMFNQItsRFSNTISAMFFGHTHY 435
                  ...22222222.2222333333357********9******************5555555555555441145555**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4684.69
//
Query:       CCE30669.1  [L=622]
Description: probable alpha-glucosidase (maltase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.6e-108  361.2   0.0   8.9e-108  360.8   0.0    1.1  1  Alpha-amylase   Alpha amylase, catalytic domain
     0.0023   18.0   0.0     0.0063   16.6   0.0    1.8  1  Malt_amylase_C  Maltogenic Amylase, C-terminal domain
  ------ inclusion threshold ------
      0.012   14.8   0.0      0.022   13.9   0.0    1.3  1  hDGE_amylase    Glycogen debranching enzyme, glucanotransfera
       0.23   11.4   0.2       0.23   11.4   0.2    1.8  2  UBA             UBA/TS-N domain


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.8   0.0    2e-111  8.9e-108       1     334 [.      33     393 ..      33     398 .. 0.94

  Alignments for each domain:
  == domain 1  score: 360.8 bits;  conditional E-value: 2e-111
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGG CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkr 96 
                    GDL Gi++kLdYl +LG+++iw++P+++spq d+gYdi++y+ ++  +Gt +d++ Li+++h++g++++lDlV+NHtsd+h+wfkes+++k++pkr
     CCE30669.1  33 GDLPGITSKLDYLASLGINVIWICPMYDSPQVDMGYDISNYEDVYRPYGTVQDMEVLIKETHARGMRIMLDLVINHTSDQHAWFKESRSSKDNPKR 128
                    9*********************************************************************************************** PP

                    CCC-E..........ESS-STTC-.TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCC.CCCCCCTTT-SEEEETTCCCTTTCCCC.. CS
  Alpha-amylase  97 dyyiwkegk....eekeppnnwks.lfdgsaweydekaqeyylhlflkklpdLnteneevrkelkd.vvkfwlekgidGfRlDvvkhvskveal.. 184
                    ++yiw++ k    +e+ ppnnw+s + +gs we+de ++eyylhlf+ ++pd+n +nee rk+l+  +++fwl++g+dGfR+D+v+++sk  +l  
     CCE30669.1 129 NWYIWRPAKysstGERLPPNNWRSnFGGGSVWEWDERTEEYYLHLFAVEQPDMNFDNEEARKALYAsAMEFWLQRGVDGFRIDTVNMYSKPVGLpd 224
                    ***********9999*********5667899***********************************************************7777** PP

                    ................HCCHCCHHHHHHHHHHHTCCGTT-EEEEE-.TT-SCCCHCCCC-CGG-SICECCITTCGG..GCC-CTSTTSB-SS-HHH CS
  Alpha-amylase 185 ................esngeflheftqalnetvasrkevmtvgEv.ssdasedlrvyttearlelemvldfphld..vaqkakikeqlksisakk 261
                                    ++ng+++hef  ++n+   s++ ++ vgE  +  ++ +  +y++++ ++l+mv++f  +d  +++  k +  lk++++ +
     CCE30669.1 225 apitdpkaffqpggtvYTNGPRMHEFLGEMNQIL-SNYGAISVGELpFTPDTAKVLKYVSAQAKQLDMVFQFDVVDcgFGKTHKHETGLKNFTLPE 319
                    *******************************886.999*******83455677778888888888888888876661155666668889999**** PP

                    HHHHHHHHHHHS-CCCTTCEEES--TTS--HHHHTTSSTTTT.HHHHHHHHHCCCTSSSEEEEETTCCCT---- CS
  Alpha-amylase 262 lkellkkwlkaleeaaeeavtflgnHDqeRilsrlgddsaea.ekklklaaillltlrGvpviYyGeEigmtgg 334
                    +k++++++++ + +++ ++++fl+nHDq+R++sr++dds+e  +k++k++a+++  l+G+ ++Y+G+Eig  ++
     CCE30669.1 320 VKAAISRMQAVIYNTDGWTTVFLENHDQARSVSRFADDSPELrVKSAKMLALMQGCLSGTQYVYQGQEIGCVNA 393
                    ***************************************9989***************************9986 PP

>> Malt_amylase_C  Maltogenic Amylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.4e-06    0.0063       1      41 [.     515     557 ..     515     572 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-06
                     -EEEE---S-TTEEEEEEEETT..EEEEEEEESS-EEEEE--G CS
  Malt_amylase_C   1 GsfefleadnrkvlaYlReyed..etilvvaNrsaqaveldls 41 
                     G+f+ l++ +++ +++++e+    ++ilvv+N++aq   ++ +
      CCE30669.1 515 GDFRDLRPADPDLFVFVKELAPggDKILVVLNFTAQRKGFTRP 557
                     9*******************9888***********98776665 PP

>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.9e-06     0.022      24     113 ..      38     119 ..      30     131 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.9e-06
                   HHHHHHHHHHTT--EEEES--EEE-TT--TTSEEEEEEE-TTT-.....SSC.HHHHHHHHHHHHHH--EEEEEE--SEEETT-CCCCC- CS
  hDGE_amylase  24 WekvlkeikekgYnmiHftPlqelGesnSpYSiadqleldkelfeekdkeekeedveklvkklekeygllsltDvVlnHtannskwleeh 113
                    +++l+  ++ g n+i  +P+    + +  Y i++  ++ +          +++d+e l+k+++   g+  + D+V nHt+++ +w +e 
    CCE30669.1  38 ITSKLDYLASLGINVIWICPMYDSPQVDMGYDISNYEDVYRPY-------GTVQDMEVLIKETHA-RGMRIMLDLVINHTSDQHAWFKES 119
                   5677888999999******************999988877766.......467899999999875.699*****************9986 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.1     5e+03      10      15 ..      64      69 ..      64      69 .. 0.90
   2 ?   11.4   0.2     5e-05      0.23      11      26 ..     180     195 ..     180     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
                HHTTS- CS
         UBA 10 veMGFd 15
                v+MG+d
  CCE30669.1 64 VDMGYD 69
                79***8 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5e-05
                 HTTS-HHHHHHHHHHT CS
         UBA  11 eMGFdreevveALrat 26 
                 +M+Fd ee+++AL+a+
  CCE30669.1 180 DMNFDNEEARKALYAS 195
                 7*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4270.75
//
Query:       CCE30670.1  [L=107]
Description: uncharacterized protein CPUR_04519 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.052   14.1   0.0      0.065   13.7   0.0    1.1  1  HEPN_SAV_6107  SAV_6107-like HEPN
       0.24   11.4   0.4       0.35   10.9   0.4    1.2  1  PriA_CRR       PriA DNA helicase Cys-rich region (CRR) domain


Domain annotation for each model (and alignments):
>> HEPN_SAV_6107  SAV_6107-like HEPN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.3e-06     0.065      20      85 ..      11      79 ..       7      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.3e-06
  HEPN_SAV_6107 20 raAaAvLaargrpe...rrrrrprsaWelLaevaPelaewaalFaagaarraaieaGieravtareadd 85
                   r A Av  + ++++   r+++++ s+W++ + +  +l + a+l +++  rr++ ++G + +vt+re+ +
     CCE30670.1 11 RHACAVFMTTHASShslRQEAEIISVWSIEDVASGNLVTGADLGSESRLRRQSPNSGTRTRVTKRESSA 79
                   788899888666656889999**********************9999999***************9876 PP

>> PriA_CRR  PriA DNA helicase Cys-rich region (CRR) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   3.9e-05      0.35       3      18 ..      13      28 ..      12      28 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.9e-05
    PriA_CRR  3 nCdvsltyHksrnrLr 18
                 C+v +t H+s+++Lr
  CCE30670.1 13 ACAVFMTTHASSHSLR 28
                7*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 818.54
//
Query:       CCE30671.1  [L=548]
Description: probable maltose permease (MalP) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-89  300.6  21.6    2.4e-89  300.3  21.6    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.4e-21   76.8  45.8    3.4e-20   72.3  24.2    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.8    8.7  10.4      0.059   13.5   2.5    2.4  2  DUF5518   Family of unknown function (DUF5518)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.3  21.6   3.9e-93   2.4e-89       4     452 .]      52     506 ..      49     506 .. 0.94

  Alignments for each domain:
  == domain 1  score: 300.3 bits;  conditional E-value: 3.9e-93
                 HHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS- CS
    Sugar_tr   4 vaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsv 102
                 + +++ +++g+d+ ++++  + + f+k+fg+++ ++s+e ++ +++ + +++l+G+i+G +++g+++drfG++k+l+ a + ++  +++ ++a+   s+
  CCE30671.1  52 FLSTCLVMEGFDLVLLSTLFAYPPFQKKFGVQQPDGSYELTAAWQSGLNNATLAGQILGLFVVGYIADRFGYRKTLIGALTGCIGFIFIPFFAE---SL 147
                 5667789***************************************************************************************...** PP

                 TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHH CS
    Sugar_tr 103 evlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPESPrylve 200
                  +l++g+vl+G+++G++++l+++y+sE++p++lR +l+++ +l++++G+l+a+++  ++  +t++ +g++i+++lq+ +++ l+i+++++PESP++lv 
  CCE30671.1 148 SQLLAGQVLLGLPWGVFQTLTTTYASEVCPTHLRAYLTTYVNLCWVMGQLIASGVSRAMlTRTDQ-WGYKIPFALQWTWPVPLIIGIYLAPESPWWLVR 245
                 ***********************************************************555555.********************************* PP

                 TT-HHHHHHHHHHHHHC.....HHHHHHHHHHHHHHHHHHH......HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HH CS
    Sugar_tr 201 kgkeeeakevlaklrge.....edadrelaeekdsleaeqeee.kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..ll 291
                 +g+ e+ak++l++l +        +d+ +  +++++e e+e +  +s++ l++   +++r+ i+++++++q ++G +++m ys+++++++g+  +  + 
  CCE30671.1 246 RGRIEDAKKSLERLTTRntgavFRPDETISMMVHTNELEKELTaGTSYRDLFRGSVNTRRTEIVCMTWMIQTMCG-ASFMGYSTMFYRQAGMAVEnsFD 343
                 *************66655467777777777777777777665599*********77*******************.***************987777** PP

                 HHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHH CS
    Sugar_tr 292 vtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalai 390
                 +++  +++ +v t+ ++fl+ rfGRRtl+l G ++m+i+++ +g  a++++++ ++a+ ++  +++++++ + +++gpv++ lvsEl ++++R+k   +
  CCE30671.1 344 MSLAQYALGAVGTISSWFLMGRFGRRTLYLGGQTFMCILLLTIGCTAFAGRSN-TGAQWAIGSMLLVYTFTYDATVGPVCYSLVSELTSTRLRTKSVVL 441
                 ********************************************667777777.6******************************************** PP

                 HHHHHHHHHHHHHHHHHHHHCHHH...T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 391 avavnwlanflisllfpiiteaig...ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 a  + +++ + +++++p +++      g++ ++++ag + l +++++f +pe kgrt  e++ lf
  CCE30671.1 442 ARSAFNIVGIMTNTITPRMLNPTAwnwGAKAGFFWAGTCFLCAVWTYFRLPEPKGRTYGELDILF 506
                 ********************99888899*****************************99988765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3  24.2   5.8e-24   3.4e-20       4     350 ..      56     451 ..      48     453 .. 0.71
   2 !   18.8  13.7     1e-07   0.00062      43     182 ..     350     498 ..     344     526 .. 0.74

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 5.8e-24
       MFS_1   4 aaflsalarsilgpalpl.alaedlgispse......igllltl...yalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlr 92 
                 ++++ +++  +l++++     ++ +g++         + +  +l     +g++++ +++G+++drfG r++l+ +l++ + ++++++fa sl  ll++ 
  CCE30671.1  56 CLVMEGFDLVLLSTLFAYpPFQKKFGVQQPDgsyeltAAWQSGLnnaTLAGQILGLFVVGYIADRFGYRKTLIGALTGCIGFIFIPFFAESLSQLLAGQ 154
                 55555566666666666668999999666663333336664444655888*********************99999999888999999777779***** PP

       MFS_1  93 vlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...........Wravfyilaivsllafvlfllllpeepperk 180
                 vl Gl  g++ ++  ++++++ p   r+  + ++++++ +G +++ +++ ++++              W+++  +  i+++ ++    ++l+++ + + 
  CCE30671.1 155 VLLGLPWGVFQTLTTTYASEVCPTHLRAYLTTYVNLCWVMGQLIASGVSRAMLTRTDqwgykipfalqWTWP--VPLIIGIYLAPESPWWLVRRGRIED 251
                 **************************************************9998888888888888555554..4444444444433355544444444 PP

       MFS_1 181 rkspkeee..........................kgtgpaplvpawkallkdpvlw.....illialllfffgfsglltllplylqevlgls.glllag 247
                  k++ e++                          + t++++    ++ l++  v       ++++ ++ +++g s++ + + +y q  +    ++ +++
  CCE30671.1 252 AKKSLERLttrntgavfrpdetismmvhtnelekELTAGTS----YRDLFRGSVNTrrteiVCMTWMIQTMCGASFMGYSTMFYRQAGMAVEnSFDMSL 346
                 44444444688888888888888888887765552222222....333333332212234235555555555555566666666555555557545555 PP

       MFS_1 248 lllallalvgailallagrlsdr...lgrrrrlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfn 342
                 + +al+a++++ + +l gr+ +r   lg   ++++ +lll++++ ++a  ++t  ++++  +l++++f   ++v p   +l+s+l++++ + + + l+ 
  CCE30671.1 347 AQYALGAVGTISSWFLMGRFGRRtlyLGG--QTFMCILLLTIGCTAFAGRSNTGAQWAIGSMLLVYTFtYDATVGPVCYSLVSELTSTRLRTKSVVLAR 443
                 56666666666666677777777655554..8888888888888888888888666666669999***999999************************* PP

       MFS_1 343 tagslgga 350
                 +a++++g+
  CCE30671.1 444 SAFNIVGI 451
                 99999987 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1e-07
       MFS_1  43 lgaavaslplGrlsdrfGrrrvlllglllfalg.lllll..fa..sslw.lllvlrv..lqGlga.galfpagaaliadwfpkeergraigllsagfsl 132
                 ++ av+++   +l+ rfGrr ++l g +++++  l++++  fa  s+    ++++ +  +  +++ +++ p++++l++++++ + r++ + l+ ++f++
  CCE30671.1 350 ALGAVGTISSWFLMGRFGRRTLYLGGQTFMCILlLTIGCtaFAgrSNTGaQWAIGSMllVYTFTYdATVGPVCYSLVSELTSTRLRTKSVVLARSAFNI 448
                 445666666678889******************55555587767855443344433322555666899******************************* PP

       MFS_1 133 GailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrk 182
                   i++  + + ++    W +   +  + +  +f+++++ +++ p +++r 
  CCE30671.1 449 VGIMTNTITPRMLNPTAWNWGAKAGFFWAGTCFLCAVWTYFRLPEPKGRT 498
                 *****999998887777888855555555555554457777777776665 PP

>> DUF5518  Family of unknown function (DUF5518)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.5   9.8e-06     0.059      25      68 ..     101     144 ..      91     178 .. 0.72
   2 ?   -1.4   1.1      0.41   2.4e+03      68      80 ..     383     393 ..     344     422 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.8e-06
     DUF5518  25 vgsllgllvgGlvaGylaggdskdgavaGalaGligaipvlvll 68 
                 + +l+g ++g +v+Gy+a +   + ++ Gal+G ig+i +  ++
  CCE30671.1 101 NATLAGQILGLFVVGYIADRFGYRKTLIGALTGCIGFIFIPFFA 144
                 5678999******************************9983333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.41
     DUF5518  68 llvlllglvaaig 80 
                 ll++  g +a +g
  CCE30671.1 383 LLTI--GCTAFAG 393
                 1111..2223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3916.17
//
Query:       CCE30672.1  [L=509]
Description: related to pisatin demethylase (cytochrome P450) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-51  174.9   0.0    3.3e-51  174.5   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.5   0.0   1.8e-55   3.3e-51      15     448 ..      50     489 ..      36     498 .. 0.83

  Alignments for each domain:
  == domain 1  score: 174.5 bits;  conditional E-value: 1.8e-55
                 HHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTT. CS
        p450  15 qlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgkl. 112
                 +   +++ h  l ++ +kyg+i r+ ++    vv ++ +++++ l  +++++ + +++ +      p+k++ v + + +++  +R+++ +   ++    
  CCE30672.1  50 KATLSGQTHLDLYQVCEKYGQIARISPND---VVTCDIDLIRRMLSVRSQYTRSAWYNGMRFE---PHKNNIVSMRDDATHAIMRSRMAAGYSGK-EVd 141
                 33335778899999***********9876...7778889*********877777655555444...66666666666699999999999999999.556 PP

                 THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH.HHHHHHHHHHHHHHHHCHHHHCCCC....CHHHTCCSCHHH CS
        p450 113 sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledek.lselvkaveelssllskssvqllll....fpllkylptkll 206
                  le+ ++  + +l+  l++ a+e+  +d ++ +++ a+dv+++++Fg+ f+ l+++   + ++ a+e+ +  l  s v ++++    +pl+++l+ +  
  CCE30672.1 142 DLEQKIDTGVLNLLGLLDSYAKENRIFDFARKVQYLAVDVVTDLIFGETFGDLTSDAdVNGFLGAMERFVPTLIVSTVLPWMIpllgMPLFRPLIPSEH 240
                 9*************************************************9887766456677777776665555554444441111455555554444 PP

                 HHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH CS
        p450 207 rklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEide 305
                   l   v ++ +++++++ er+ + +++    rd+l  ++           l++e+   ++   ++aG+dTt+++++ +++++++nP v + l++Ei++
  CCE30672.1 241 DVLG--VGRIMGIAKRVVSERYGDEKKT---SRDMLGSFVAR--------GLTQEQAECEIAASIIAGSDTTATAIRSTMLYIMTNPRVLSSLQHEIQS 326
                 4444..489**************99999...9********99........6***********************************************9 PP

                 HCCTTT................T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSC.EEETTEEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GG CS
        p450 306 vlgdkr................eptyddlqklpyldavikEtLRlhpvvplllpRevtkd.vvirgylipkGtevivnlyalhrdpevf.pnPeeFdpe 386
                    + +                   y++l  +pyl+avikE LR+hp++ + ++++v+ d    +g  +p Gt+++++l+++ r+ +++ ++++eF+pe
  CCE30672.1 327 SSSSLQhetqssdsdsslplppITPYAHLRTMPYLQAVIKEGLRMHPPAASPMSKQVPPDgDNWNGIAFPPGTRISLCLWGVFRSRALWgNDADEFRPE 425
                 875555567899********98788********************************996267888********************************* PP

                 GGB-TTS..CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEES CS
        p450 387 RFldekg..nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppile 448
                 R+l+     + + + +  + F+aG+ +C+G+++A+ e++  ++ lL++Fe+++ + t+p+++ +
  CCE30672.1 426 RWLEVGPekRAEMDAVWDVLFSAGKWACLGRNVAHIEMSKTIVELLRRFEFSVVDPTRPWKSIN 489
                 ***97443223345555578*********************************99999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3783.57
//
Query:       CCE30673.1  [L=610]
Description: related to transcription activator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-08   33.5   9.8    6.2e-08   32.6   9.8    1.5  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   9.8   3.4e-12   6.2e-08       1      39 [.      15      52 ..      15      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 3.4e-12
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39
                +aCd Cr +Kv+C+ ++P C++C  lnl C f + + kr
  CCE30673.1 15 RACDACRVRKVRCSNEQP-CAQCSHLNLVCNFAPAPPKR 52
                69****************.************99888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4488.50
//
Query:       CCE30674.1  [L=478]
Description: related to alpha-amylase A precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-59  200.0   0.2    5.6e-58  197.1   0.2    2.1  1  Alpha-amylase  Alpha amylase, catalytic domain
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.026   13.9   0.0    1.5  1  Cellulase      Cellulase (glycosyl hydrolase family 5)
       0.11   12.6   0.0       0.36   11.0   0.0    1.8  1  GHL6           Hypothetical glycosyl hydrolase 6


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   0.2   9.4e-62   5.6e-58       1     337 []      78     363 ..      78     363 .. 0.85

  Alignments for each domain:
  == domain 1  score: 197.1 bits;  conditional E-value: 9.4e-62
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE-S-.TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGG CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifkspq.adhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepk 95 
                    G+++Gi  kLdY+k++G++aiw+sPi+++++  +hgY+++d ++++p+fGt+++lk L+++ah+kg+ v++D+VvNH +        s+k + + +
     CCE30674.1  78 GTFRGIQGKLDYIKGMGFDAIWISPIVANDDgGYHGYWTKDLYAVNPNFGTAQELKDLVNAAHSKGMFVMIDIVVNHVGPGPR----SNKRPSPLD 169
                    899************************965428**********************************************9877....444344334 PP

                    GCCC-E......ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCCHCCHCC CS
  Alpha-amylase  96 rdyyiwkegkeekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkdvvkfwlekg.idGfRlDvvkhvskvealesngef 190
                    + ++  +        p++    + +++w+ ++ +        l++lpdLnt+n+++rk  +d ++ +++++  dG+R+D+vkh++k        + 
     CCE30674.1 170 QPWAY-H--------PKCDI--DYNNQWSVENCQ--------LSNLPDLNTQNPAIRKLFQDWIRWLVREFrPDGLRIDTVKHIEK--------DY 238
                    44444.4........33433..345667654444........789*****************9999999999**************........** PP

                    HHHHHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEES-- CS
  Alpha-amylase 191 lheftqalnetvasrkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeeavtflgn 286
                    + +f++a+         ++ +gE ++++      y+    +   +++++p +   q++     +++ s ++l ++ +++ +  ++ a    tf++n
     CCE30674.1 239 WPDFMAAAG--------MYSLGEAFNGDPR----YVAGWASPTLSLFNYPIFWPLQRFY----QQKGSSQDLVDMHNQVGSVFPD-AAALGTFIDN 317
                    *******99........567******9995....45444555555899**999999998....4444578888888888888998.899******* PP

                    TTS--HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT----STT CS
  Alpha-amylase 287 HDqeRilsrlgddsaeaekklklaaillltlrGvpviYyGeEigmtggkdp 337
                    HD++R+ls  +d +      lk+a++ +++ rGvpv+YyG+E+g+ gg dp
     CCE30674.1 318 HDNARFLSQKNDVA-----LLKNALTYVMLARGVPVVYYGTEQGYGGGMDP 363
                    ********999888.....8*************************999876 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.4e-06     0.026      28     117 ..      88     222 ..      68     228 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.4e-06
                 HHHHHHT-SEEEEEEE.......CTGGTTSSTTT..GCTHHHHHHHHHHHHHHHHTT-EEEEEEESS..............................TT CS
   Cellulase  28 devkdagfntvRlpvs.......wgelvenapdy..kvdenslerveevvkyakenglyvildiHse..............................eg 87 
                 d +k +gf+++ +          ++++ + ++ y  + +    ++++++v++a ++g+ v++di  +                              ++
  CCE30674.1  88 DYIKGMGFDAIWISPIvanddggYHGYWT-KDLYavNPNFGTAQELKDLVNAAHSKGMFVMIDIVVNhvgpgprsnkrpspldqpwayhpkcdidynNQ 185
                 55666666666654331222222122221.22222233337899********************98888888888888888884444444444444433 PP

                 T.......CSSSSTTTTHHHHHHHHHHHHHHHHHHHT CS
   Cellulase  88 w.......ltkadgnssedtaeeffkklwtqiAeryk 117
                 w        +  d n+++ ++++ f+++++++  ++ 
  CCE30674.1 186 WsvencqlSNLPDLNTQNPAIRKLFQDWIRWLVREFR 222
                 3444444333344444444466668888888888885 PP

>> GHL6  Hypothetical glycosyl hydrolase 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     6e-05      0.36      19      66 ..     103     150 ..      86     157 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6e-05
        GHL6  19 ifardaggvvyYrtk.ldfvtehpklk.rdllkelvkachregikvvvrv 66 
                 i a+d gg+  Y tk l  +  +p+      lk+lv+a+h++g+ v++ +
  CCE30674.1 103 IVANDDGGYHGYWTKdL--YAVNPNFGtAQELKDLVNAAHSKGMFVMIDI 150
                 4599999*******955..9999999547889***********9888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 3845.56
//
Query:       CCE30675.1  [L=194]
Description: uncharacterized protein CPUR_04524 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-22   79.9   0.4    2.6e-22   79.5   0.4    1.2  1  HsbA      Hydrophobic surface binding protein A


Domain annotation for each model (and alignments):
>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.4   1.4e-26   2.6e-22       3     119 ..      45     163 ..      43     164 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 1.4e-26
                 HHHHHHHHHHHHHHHHHHHHHH--SH...HHHHHHHHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHH.HCHHHHHHHHHHHHHTHHHHHHHT-HHH CS
        HsbA   3 tvisdittistavtaldtavnafnGg.asalpilsasnalvsaikkattdaqasapltdeealalaqavq.tLepdvkaaldaliaKkpafdkagltsl 99 
                 + ++d+++i++++  l + v+ +nG+ +s +pi  + ++l ++i++at++ + ++  ++e+++a+++++q  + p++  a++ +++Kk+ f +ag ++ 
  CCE30675.1  45 QTTTDLEDITNNIYGLYQVVSMYNGSpISQYPIVGSQDKLLHSINEATAHGKLAPVASQEDSTAILTYIQtVMWPAMLRAITPMKSKKDLFSQAGQAPA 143
                 7899*********************8899*****************************************55*************************** PP

                 HHHHHHHHHHHHHHHHHHHH CS
        HsbA 100 vlssLqdlkaasdaLsdalv 119
                 +++ L dlk+a+++Lsdalv
  CCE30675.1 144 MKTLLVDLKTAVMELSDALV 163
                 *******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1476.74
//
Query:       CCE30676.1  [L=189]
Description: uncharacterized protein CPUR_04525 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-20   74.3   1.3    1.5e-20   73.8   1.3    1.2  1  HsbA      Hydrophobic surface binding protein A


Domain annotation for each model (and alignments):
>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   1.3   8.4e-25   1.5e-20       2     119 ..      39     158 ..      38     159 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 8.4e-25
                 HHHHHHHHHHHHHHHHHHHHHHH--SH...HHHHHHHHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHH.HCHHHHHHHHHHHHHTHHHHHHHT-HH CS
        HsbA   2 atvisdittistavtaldtavnafnGg.asalpilsasnalvsaikkattdaqasapltdeealalaqavq.tLepdvkaaldaliaKkpafdkaglts 98 
                 a+ +sd++ti +++++l++a + +nG+ +sa pi s+ +al ++i kat++a+  +  t+ +++a+++++q ++ p++  +l ++++Kk+ + +ag ++
  CCE30676.1  39 AQTKSDMETILKNINDLTKATDMYNGSpISAFPIVSKHDALLRSISKATAHAKDIHVPTEGDSAAIISYIQgSMWPAMGRTLSSIKTKKDILASAGQAA 137
                 6789**********************8899*****************************************99************************** PP

                 HHHHHHHHHHHHHHHHHHHHH CS
        HsbA  99 lvlssLqdlkaasdaLsdalv 119
                  ++s L++l     +Ls+alv
  CCE30676.1 138 AMKSILENLEFVMLKLSNALV 158
                 ******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1467.16
//
Query:       CCE30677.1  [L=234]
Description: uncharacterized protein CPUR_04526 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-27   94.7   0.2      7e-27   93.7   0.2    1.5  1  MULE             MULE transposase domain
    7.1e-06   25.1   0.1    1.1e-05   24.5   0.1    1.2  1  Transposase_mut  Transposase, Mutator family
  ------ inclusion threshold ------
      0.029   14.6   0.0       0.44   10.8   0.0    2.1  2  DDE_Tnp_IS240    DDE domain


Domain annotation for each model (and alignments):
>> MULE  MULE transposase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.2   1.2e-30     7e-27       4      96 .]       1      95 [.       1      95 [. 0.93

  Alignments for each domain:
  == domain 1  score: 93.7 bits;  conditional E-value: 1.2e-30
        MULE  4 lDgTyktnkyklplltvvgvddngqlvplafalveseneesyewllq..elleevsgqrspkviitDkekallnaleevfpeakhrlClfHiakn 96
                +D+Tyk n++k+pl++v+gv +  + + +af+l  +e+++ y w+lq  +  +e  + r+p+vi+tD+e+al++ l+ +fp++++++C++Hi kn
  CCE30677.1  1 MDNTYKVNRFKMPLMQVIGVSAVATNFSVAFGLAAREDTDAYMWFLQqlRSSQESAQIRAPEVIVTDFEAALKKSLRHIFPNCQQQICTWHILKN 95
                7**********************************************66344455566**********************************998 PP

>> Transposase_mut  Transposase, Mutator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   1.8e-09   1.1e-05     201     270 ..      30     103 ..      11     111 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.8e-09
  Transposase_mut 201 glevadsEsekfWlavlesLkn.rGlkgv...elvvsDahkGLvkaisavfpeaavQrCrvHllrnllakvpkk 270
                      ++ +a +E+ +++  +l++L++ +  +++   e++v+D  + L+k++++ fp+ ++Q C+ H+l+n++ +++kk
       CCE30677.1  30 AFGLAAREDTDAYMWFLQQLRSsQESAQIrapEVIVTDFEAALKKSLRHIFPNCQQQICTWHILKNVVLNIKKK 103
                      566778999999999*****86244444422279************************************9998 PP

>> DDE_Tnp_IS240  DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.4e-05      0.44      31      86 ..      29      86 ..      23     106 .. 0.82
   2 ?    1.6   0.0     0.051     3e+02      97     112 ..     170     185 ..     151     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.4e-05
  DDE_Tnp_IS240 31 ldflvskrRdtkaakaflrkalkkek....lepeeivtDkasayasalkelkregelfde 86
                   + f + +r dt+a   fl+++ ++++    + pe+ivtD  +a ++ l++++++ +  ++
     CCE30677.1 29 VAFGLAAREDTDAYMWFLQQLRSSQEsaqiRAPEVIVTDFEAALKKSLRHIFPNCQ--QQ 86
                   667788999************99988888999********************9764..33 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.051
  DDE_Tnp_IS240  97 nriEsdhrtlKkrlrp 112
                     r+Es+h +lK+rl++
     CCE30677.1 170 SRVESSHHALKARLKH 185
                    589*********9954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1776.90
//
Query:       CCE30678.1  [L=336]
Description: uncharacterized protein CPUR_04527 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00096   19.8   0.0     0.0016   19.1   0.0    1.4  1  DUF4646   Domain of unknown function (DUF4646)


Domain annotation for each model (and alignments):
>> DUF4646  Domain of unknown function (DUF4646)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   8.6e-08    0.0016      35      91 ..     108     164 ..      73     186 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.6e-08
     DUF4646  35 elaPpskavphplvthdVseedWkrFledikaaaalstaekiaagvaplalslgllg 91 
                 ++aP ++a+ph+l +h+++++ W+ F+++  a  +   +++++a++  +a slg+  
  CCE30678.1 108 PAAPFLSAYPHDLLSHGITQQAWHAFVDTTSAFLTAKVSDRAIAHAGDMAKSLGAPP 164
                 5689999***********************999999999999999988888888554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2640.98
//
Query:       CCE30679.1  [L=168]
Description: uncharacterized protein CPUR_04528 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1321.02
//
Query:       CCE30680.1  [L=388]
Description: probable TAD2-tRNA-specific adenosine deaminase 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-20   72.0   0.2    1.6e-19   69.6   0.2    2.1  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    4.5e-16   58.8   0.1    4.2e-07   29.8   0.0    2.3  2  MafB19-deam      MafB19-like deaminase
     0.0018   18.4   0.0      0.042   13.9   0.0    2.6  2  Bd3614-deam      Bd3614-like deaminase


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.2   2.7e-23   1.6e-19       4     100 ..      71     226 ..      68     227 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 2.7e-23
                      HHHHHHHHHHHHHHHHTTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.TSSCE.......................... CS
  dCMP_cyt_deam_1   4 dekllelalkaakeaqkcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaakn.ggskl.......................... 70 
                      + +++  al++a+ a   ++++VG+v+v+ng ii++g+n ++   + t HAE +A+ + ++  ++ +                           
       CCE30680.1  71 HMQFIGEALDMARLALRTNETPVGCVLVHNGTIIAKGMNATNVTRNGTRHAEFMAVSALLSYpPK-DGprttslkpkrpprvledanetvwvda 163
                      567888999999999999******************************************99433.2246799********************* PP

                      .................................TTEEEEEEE--BHHHHHHHHHHT-SEEEEE CS
  dCMP_cyt_deam_1  71 .................................egatlyvtlePCsmCakaiiqsgikkvvvg 100
                                                       ++++lyvt+ePC mCa ++ q+gikkv++g
       CCE30680.1 164 rppdegnedgrmghlypygqkfhpdarvsreilRECILYVTVEPCVMCASLLRQLGIKKVYFG 226
                      ************************************************************997 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   5.8e-10   3.5e-06       3      58 ..      71     126 ..      69     129 .. 0.92
   2 !   29.8   0.0     7e-11   4.2e-07      69     107 ..     195     243 ..     189     255 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 5.8e-10
  MafB19-deam   3 kekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaal 58 
                  + ++  +al +++ a+  +e ++g+v v+++ +ia+g n +++  + t HaE  a+
   CCE30680.1  71 HMQFIGEALDMARLALRTNETPVGCVLVHNGTIIAKGMNATNVTRNGTRHAEFMAV 126
                  5567778999******************************************9887 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 7e-11
  MafB19-deam  69 rlddatlyvtlepCdmCagaivqaglkklvygagnpks..........l 107
                   l +++lyvt+epC mCa ++ q g+kk+ +ga n k+           
   CCE30680.1 195 ILRECILYVTVEPCVMCASLLRQLGIKKVYFGAVNDKFggtggvfsihA 243
                  5789******************************999866655544444 PP

>> Bd3614-deam  Bd3614-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.057   3.4e+02      14      44 ..      96     128 ..      87     143 .. 0.77
   2 !   13.9   0.0   7.1e-06     0.042      71      98 ..     192     219 ..     160     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.057
  Bd3614-deam  14 lvsdqGelldaavn.tn.aenkvLHAEvnLlap 44 
                  ++ ++G++++ ++n tn + n + HAE+  +  
   CCE30680.1  96 VLVHNGTIIAKGMNaTNvTRNGTRHAEFMAVSA 128
                  5667899999999944545899*****976655 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 7.1e-06
  Bd3614-deam  71 rrpleegarllvtlqcCkmCAalvvaaa 98 
                  +r +  +  l+vt ++C mCA+l+ +++
   CCE30680.1 192 SREILRECILYVTVEPCVMCASLLRQLG 219
                  567788999*************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3043.00
//
Query:       CCE30681.1  [L=898]
Description: uncharacterized protein CPUR_04530 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.6   7.8      0.026   14.6   7.8    1.5  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   7.8   1.5e-06     0.026       1      15 [.     214     228 ..     214     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.5e-06
                 SS-HHHHHCT---ST CS
     Zn_clus   1 haCdnCrkkKvKCda 15 
                 +aCdnCr+kK++Cd 
  CCE30681.1 214 KACDNCRRKKIRCDP 228
                 59***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 6913.32
//
Query:       CCE30682.1  [L=326]
Description: uncharacterized protein CPUR_04531 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-06   27.2   0.0    6.5e-06   25.8   0.0    1.7  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.6e-10   6.5e-06       8     134 ..      98     214 ..      92     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3.6e-10
  Acyltransferase   8 enlpekgpailvaNHqsylDvlllwlllyksn.gprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegklvviFPE 100
                      e++p+  +++l+aN +s +D+++l++++   + +  +v  +++++++++ llg +m++lg +       +++   l n++e     ++v +FPE
       CCE30682.1  98 ERFPH-PGSVLAANLTSPIDAVYLAAIF---DpI-FTVSYPGQRNVQRVSLLGAIMHALGPVHTAP-PPGVKLVPLRNLLEEYPD-RVVAVFPE 184
                      66665.899*******************...422.699***************************9.888888888888776655.88****** PP

  Acyltransferase 101 GtrsregellpfkkGlvrlaakakkgvpivPvai 134
                       ++s+   +lpf+ +lv+    a  +vpi+Pv+i
       CCE30682.1 185 CGTSNGKAILPFSPSLVET--PA--KVPIFPVSI 214
                      *******************..55..77****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2441.93
//
Query:       CCE30683.1  [L=601]
Description: probable dihydroxy-acid dehydratase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.5e-212  705.6   0.4     4e-212  705.4   0.4    1.0  1  ILVD_EDD  Dehydratase family


Domain annotation for each model (and alignments):
>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  705.4   0.4  2.2e-216    4e-212       1     517 []      74     595 ..      74     595 .. 0.98

  Alignments for each domain:
  == domain 1  score: 705.4 bits;  conditional E-value: 2.2e-216
    ILVD_EDD   1 kpiigiansyselvpchvhlkelaeavkegveeaggvpaefntigvsDgiamgeegmrysLpsReliadsvetmleaqllDalvlisgCDKivPgllma 99 
                 k+++gi +++ e +pc++hl +l + v+e+v++ag +p++fntigvsDgi+mg++gmrysL+sRe+iads+et++++q++Da++ ++gCDK++Pg+ +a
  CCE30683.1  74 KAQVGISSVWYEGNPCNMHLMDLSKVVRESVAKAGLIPYRFNTIGVSDGISMGTSGMRYSLQSREIIADSIETVMNGQWYDANISLPGCDKNMPGVAIA 172
                 789************************************************************************************************ PP

    ILVD_EDD 100 aarlniPaifvsgGpmeagkkk...kldlssvfeavgalaagkiseeeleeleeaacpgaGsCsgmgTAntmaclaealGlslpgsasipatsaerkel 195
                   r+n+P+i+v+gG++++g  k   +ld++s+f+a+g++ +g+i+e++  ++ ++acpg G+C+gm+TAntma+++e++Gl+lpgs+s pa+++++ ++
  CCE30683.1 173 FGRVNRPSIMVYGGTIKPGCGKggeQLDIVSAFQAYGQFITGEITEAQRFDIIRNACPGSGACGGMYTANTMATALETMGLTLPGSSSNPAEDPAKIAE 271
                 ******************77556679************************************************************************* PP

    ILVD_EDD 196 aeeagkrivelvekdlkprdiltkeafeNAivvllalGGStNavlHllAiAreagveltlddfdelsrkvpllaklkPsgkydmedlhraGGvpavlke 294
                 +e+ g+++ +l+++d++prdi+t++afeNA++v+ +lGGStNavlHl+AiA ++g++lt+ddf+++s++vplla+l+Psgky med+h++GG+p++lk 
  CCE30683.1 272 CESIGEAVKNLLKEDIRPRDIMTRQAFENAMTVVSILGGSTNAVLHLIAIADSVGIKLTIDDFQTVSNRVPLLADLRPSGKYVMEDVHKIGGTPSLLKF 370
                 *************************************************************************************************** PP

    ILVD_EDD 295 Llkagllhgdvltvtgktlaenlee..aevkeqdvirplekplskegglavLkGnLapeGavvKtsaveeellkfegpArvfdseeeaveailkgkika 391
                 Llk+g+l+g+ +tvtgkt+++n+e+  +  ++q++irpl++p++++g++++++G+Lap+G+v K++++e   l+f+g+A+v+dse+++++ +++g+ik+
  CCE30683.1 371 LLKEGILDGSGITVTGKTMKQNMENvpDFPSDQKIIRPLSNPIKSTGHIQIMRGSLAPGGCVGKITGKE--GLRFTGKAKVYDSEDDMIHSLERGDIKK 467
                 ***********************98655559*************************************9..9********************99***** PP

    ILVD_EDD 392 gd..vvviryeGPkGgpGmpEmlkptsallgkglgkkvalitDGRfSGaskglvighvsPEAaegGpialvedGDiieidiekrtlelevseeelaaRr 488
                 g+  vv+iry GPkGgpGmpEmlkp+sa++g+glgk+val+tDGR+SG+s+g++igh++PEA +gGpialv+dGD i id+ek+ ++l+v e+e+++Rr
  CCE30683.1 468 GEksVVIIRYDGPKGGPGMPEMLKPSSAIMGAGLGKDVALLTDGRYSGGSHGFIIGHIVPEAIVGGPIALVKDGDEIIIDAEKHAIDLNVPEAEMEKRR 566
                 *999*********************************************************************************************** PP

    ILVD_EDD 489 aawkp.ekkvktrgllakyaklvssaseGA 517
                 ++wk+ +   +t+g+l+kya+lvs+as+G+
  CCE30683.1 567 KEWKApA-PRYTKGTLKKYAALVSDASSGC 595
                 ****933.3345*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4229.32
//
Query:       CCE30684.1  [L=161]
Description: related to endopeptidase Clp [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-38  131.3   0.2    5.4e-38  130.7   0.2    1.3  1  CLP_protease     Clp protease
     0.0039   16.2   0.0     0.0048   15.9   0.0    1.2  1  Chloroplast_duf  Petal formation-expressed
  ------ inclusion threshold ------
       0.01   16.1   0.5       0.01   16.1   0.5    1.9  2  DUF4061          Domain of unknown function (DUF4061)
      0.014   15.3   0.0      0.028   14.3   0.0    1.5  1  Plectin          Plectin repeat
       0.04   13.5   0.0      0.075   12.6   0.0    1.4  1  DUF2368          Uncharacterised conserved protein (DUF2368)


Domain annotation for each model (and alignments):
>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   0.2   1.5e-41   5.4e-38      70     181 ..       1     119 [.       1     120 [. 0.92

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 1.5e-41
                   HHHSSS-EEEEEEEEEETHHHHHHHTS-TTGEEEETTEEEEES-TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHT.......S-HHHHHHHHC CS
  CLP_protease  70 mqyikpdvsticlGlaaSmgslllaagekgkRfalpnarimihqPlggaqgqasdieieaeellkikerlneilakhtg.......qslekiekdld 159
                   m+yik++vst+c+G aaSm+++lla+ge gkR+alp++ imihqPlgg++gqasdi i+a+++++i+e+ n+i+ +h +        sle+++  ++
    CCE30684.1   1 MAYIKSPVSTVCVGGAASMAAILLAGGEAGKRYALPHSSIMIHQPLGGTHGQASDILIYANQIQRIREQSNKIMRHHLNlakgedrYSLEEVNDMME 97 
                   89************************************************************************99975222222257899999*** PP

                   STEEEEHHHHHHHTSSSEE-SS CS
  CLP_protease 160 rdtflsaeeAveyGLideviek 181
                   rd+++s++eA+e G ide+++k
    CCE30684.1  98 RDKYMSVDEALEVGVIDEILTK 119
                   *******************987 PP

>> Chloroplast_duf  Petal formation-expressed
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06    0.0048      90     185 ..      64     154 ..       7     159 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-06
  Chloroplast_duf  90 qRnatRlfkqLereiettlalgepseedvkdame..kvlalDkayPLPllgamlekfPekvepavWWpkkkqkqkkkkskkeektssknGwsee 181
                      qR   +  k ++++++ +   ++ s e+v+d+me  k +++D+a  + ++  +l k Pe+ve      +kk++q  +++k+   t++++G ++ 
       CCE30684.1  64 QRIREQSNKIMRHHLNLAKGEDRYSLEEVNDMMErdKYMSVDEALEVGVIDEILTKRPETVEGE----EKKKTQDGEEKKT---TQEAEGMNKT 150
                      3333333345555666666666777899****9733689***********************98....3333333333333...3346666666 PP

  Chloroplast_duf 182 leee 185
                       e+e
       CCE30684.1 151 HESE 154
                      6655 PP

>> DUF4061  Domain of unknown function (DUF4061)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.1   0.5   2.9e-06      0.01      31      73 ..      60     102 ..      50     110 .. 0.84
   2 ?   -0.9   0.8      0.59   2.1e+03      57      75 ..     131     149 ..     114     159 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.9e-06
     DUF4061  31 leqleeiReqQekLarlhfeldaeeeelaekeedalresdenl 73 
                  +q+++iReq +k++r h++l + e+ ++ +e +++ e+d+ +
  CCE30684.1  60 ANQIQRIREQSNKIMRHHLNLAKGEDRYSLEEVNDMMERDKYM 102
                 589*********************9999977777776776665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.59
     DUF4061  57 elaekeedalresdenlkk 75 
                 ++++ ee+++++++e ++k
  CCE30684.1 131 KTQDGEEKKTTQEAEGMNK 149
                 3333334444455555554 PP

>> Plectin  Plectin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.9e-06     0.028      19      38 ..     100     119 ..      97     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.9e-06
     Plectin  19 erlsveeAvkrGlldeetal 38 
                 + +sv+eA++ G++de +++
  CCE30684.1 100 KYMSVDEALEVGVIDEILTK 119
                 67**************8876 PP

>> DUF2368  Uncharacterised conserved protein (DUF2368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.1e-05     0.075      61     120 ..      17      80 ..      11      83 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
     DUF2368  61 yalavvllaagaikrknpllliPlv...PLtfvlaYqydl.aYGdklerireeAerileeesel 120
                  ++a++lla+g   ++  l+   ++   PL+   +   d+  Y ++++rire++++i+ ++ +l
  CCE30684.1  17 ASMAAILLAGGEAGKRYALPHSSIMihqPLGGTHGQASDIlIYANQIQRIREQSNKIMRHHLNL 80 
                 555555555555555544443333334588888888888537****************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1710  (0.0953762); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1175.99
//
Query:       CCE30685.1  [L=359]
Description: uncharacterized protein CPUR_04534 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2531.49
//
Query:       CCE30686.1  [L=248]
Description: uncharacterized protein CPUR_04535 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-13   48.2   0.0    1.1e-12   47.9   0.0    1.1  1  Pkinase         Protein kinase domain
    9.1e-08   31.9   0.0    1.4e-07   31.4   0.0    1.2  1  RIO1            RIO1 family
    2.4e-06   27.0   0.0    3.5e-06   26.5   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    1.6e-05   25.0   0.8    3.7e-05   23.8   0.3    1.7  2  APH             Phosphotransferase enzyme family
    6.4e-05   22.4   0.1    0.00026   20.4   0.0    1.9  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0002   20.3   0.0    0.00027   19.8   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.022   14.4   0.1      0.038   13.6   0.1    1.4  1  Choline_kinase  Choline/ethanolamine kinase
       0.17   11.2   0.0       0.27   10.5   0.0    1.2  1  Kinase-like     Kinase-like
       0.17   12.0   0.3       0.88    9.8   0.1    2.1  2  LRR_6           Leucine Rich repeat


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   5.7e-16   1.1e-12      43     150 ..     103     210 ..      90     239 .. 0.80

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 5.7e-16
                 HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEE CS
     Pkinase  43 kkvlrEikilkklk...hpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgel 137
                 + vlrE++  + l+   hpniv++ +++  + ++  ++l   + ++l++++e+ + +   +  + ++ i +g+++lHs +i+H D+ p Ni++de+++ 
  CCE30686.1 103 ELVLREVEAYELLRthpHPNIVEYRGCIVVDGRISgICLAKYK-ETLDERMEAGTPF---DKDRCLEGIERGIRHLHSLNIVHNDISPYNIMLDETDHP 197
                 67899999988888888************99999966666666.5599999865555...55567999******************************* PP

                 EE-SGTTSEESSS CS
     Pkinase 138 KitDFGlakeles 150
                  i+DF+  ++  +
  CCE30686.1 198 VIIDFDSWRQNGQ 210
                 *****99887555 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   6.8e-11   1.4e-07      47     149 ..      97     202 ..      80     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 6.8e-11
                 HHHHHHHHHHHHHHHHHHHHHTT--S--EEEEETTEEEEE--EETTEEGGBHHHCG.-HHHH.....HHHHHHHHHHHHHHHHTSTEEESS-STTSEEE CS
        RIO1  47 prklvklwaekEfrnLkrleeagvpvPkpielkrhvlvmefigedgvaapklkdve.eeeea.....eelyeevleemrklykeaglvHaDLSeyNvlv 139
                 +r+  +  + +E+++ + l+++  p P+ +e++  ++v   i+  g+ ++k k++  e+ ea     ++   e +e  ++ ++  ++vH D+S yN+++
  CCE30686.1  97 TREPLRELVLREVEAYELLRTH--PHPNIVEYRGCIVVDGRIS--GICLAKYKETLdERMEAgtpfdKDRCLEGIERGIRHLHSLNIVHNDISPYNIML 191
                 56677888899******99999..99*****************..*9999999988554444111113344456667788889**************** PP

                 ETT.EEEE--G CS
        RIO1 140 ded.kvviIDv 149
                 de  ++viID+
  CCE30686.1 192 DETdHPVIIDF 202
                 *988******8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.8e-09   3.5e-06      50     151 ..     110     206 ..      94     221 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.8e-09
                  HHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr  50 eeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf 147
                  e ++++++  hpniv++ g+++ ++++  +     + +L++ +++      t  d+ ++   + +G+++L+s ++vH d++  N++l+e+++  i Df
   CCE30686.1 110 EAYELLRTHPHPNIVEYRGCIVVDGRISGICLAKYKETLDERMEAG-----TPFDKDRCLEGIERGIRHLHSLNIVHNDISPYNIMLDETDHPVIIDF 202
                  456788999*************999977766655566666666665.....5566667778999***************************9999999 PP

                  TTHE CS
  Pkinase_Tyr 148 GLar 151
                     r
   CCE30686.1 203 DSWR 206
                  6555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.4   2.8e+03      33      58 ..     101     124 ..      91     145 .. 0.71
   2 !   23.8   0.3   1.8e-08   3.7e-05     148     194 ..     163     203 ..     141     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
                 -HHHHHHHHHHHHHHHHTT-B--B-C CS
         APH  33 aaeeirrevallrlLakagvpvPevl 58 
                 + e + rev+ + lL+ ++   P ++
  CCE30686.1 101 LRELVLREVEAYELLRTHPH--PNIV 124
                 45667788888888888844..4443 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.8e-08
                 HHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 148 leeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 + e  +++  ++l+   +  ++H+D++p N+++d++d++v  +iDf+
  CCE30686.1 163 CLE-GIERGIRHLH---SLNIVHNDISPYNIMLDETDHPV--IIDFD 203
                 444.6677778888...699********************..****8 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.29   5.8e+02     149     170 ..      33      54 ..      21      79 .. 0.81
   2 !   20.4   0.0   1.3e-07   0.00026     120     168 ..     160     204 ..     101     216 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.29
         Kdo 149 illqqeeeeeaeiwliDldkar 170
                 +++ +++    +++ iDl+k  
  CCE30686.1  33 FFWATTQLRSNKLSTIDLEKLD 54 
                 7888888888899999999965 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.3e-07
         Kdo 120 krallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldk 168
                 k + l+ + r i+ lh++++ H d+ + ni+l++++    + ++iD+d 
  CCE30686.1 160 KDRCLEGIERGIRHLHSLNIVHNDISPYNIMLDETD----HPVIIDFDS 204
                 567789999**************************9....*******95 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.4e-07   0.00027     317     358 ..     169     204 ..     153     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.4e-07
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDl 358
                     +g r L+   +i+H+DiS +Ni++      ++++ ++iD+D 
      CCE30686.1 169 RGIRHLH-SLNIVHNDISPYNIMLD-----ETDHPVIIDFDS 204
                     5667888.889*************9.....456778888886 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.9e-05     0.038     141     171 ..     173     202 ..     138     208 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.9e-05
                     HGG-EEEE-S--SGGGEEE.-CTTEEEE--G CS
  Choline_kinase 141 lespvvfcHnDlqegNillnkeekklvlIDF 171
                     + ++++  HnD+ + Ni+l +e+++ v+IDF
      CCE30686.1 173 HLHSLNIVHNDISPYNIML-DETDHPVIIDF 202
                     44568899***********.88888899**9 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00013      0.27     158     196 ..     172     210 ..     167     225 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragt 196
                   +L+++ +vh+++++ n++lde    ++ +f++ ++ g+
   CCE30686.1 172 RHLHSLNIVHNDISPYNIMLDETDHPVIIDFDSWRQNGQ 210
                  69********************99999999999888876 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         1     2e+03      10      23 ..      40      53 ..      39      53 .. 0.76
   2 ?    9.8   0.1   0.00044      0.88       3      16 ..     172     185 ..     170     186 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1
       LRR_6 10 LsgNdIgDeGaeaL 23
                L++N+++   +e+L
  CCE30686.1 40 LRSNKLSTIDLEKL 53
                89999988777765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00044
       LRR_6   3 thLteLdLsgNdIg 16 
                 +hL +L++ +NdI+
  CCE30686.1 172 RHLHSLNIVHNDIS 185
                 7************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1779.61
//
Query:       CCE30687.1  [L=283]
Description: uncharacterized protein CPUR_04536 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-12   46.1   0.0    5.1e-12   45.7   0.0    1.1  1  Pkinase          Protein kinase domain
    1.6e-05   24.3   0.0    2.4e-05   23.8   0.0    1.2  1  Pkinase_Tyr      Protein tyrosine kinase
    6.7e-05   22.3   0.0    9.6e-05   21.8   0.0    1.2  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00011   22.2   0.0    0.00016   21.7   0.0    1.2  1  APH              Phosphotransferase enzyme family
     0.0014   17.5   0.0      0.002   17.0   0.0    1.2  1  Pkinase_fungal   Fungal protein kinase
  ------ inclusion threshold ------
      0.088   12.4   0.0       0.14   11.7   0.0    1.2  1  RIO1             RIO1 family
      0.094   12.3   0.1       0.18   11.4   0.1    1.4  1  Choline_kinase   Choline/ethanolamine kinase
      0.095   11.6   0.1       0.14   11.1   0.1    1.2  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
       0.21   10.9   0.0       0.31   10.3   0.0    1.2  1  Kinase-like      Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   2.6e-15   5.1e-12      46     163 ..     106     221 ..     100     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 2.6e-15
                 HHHHHHHHHHS...CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE- CS
     Pkinase  46 lrEikilkklk...hpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKit 140
                 l+Ei+  + l+   hpni ++ +++ ++ +++ l++   + + l++++e   + ++ + +  ++ i +g+++lHs +i+H D+Kp+Ni++de++   i+
  CCE30687.1 106 LHEIEAYELLRqhpHPNIAQYRGCIVSDGRITgLCFANYSMT-LQQRME---VSTPFDKELCLEGIERGIRHLHSLSIVHNDIKPKNIMLDETDRPIII 200
                 66777666666666************9999987776666644.555555...567777888999*****************************99**** PP

                 SGTTSEESSSSCSBCTTTSCGGG CS
     Pkinase 141 DFGlakelessskltsfvgtseY 163
                 D++  ++  +  +l s  gt  +
  CCE30687.1 201 DLDAWQQKGQ--ELGSKKGTAGW 221
                 *997665544..25666666555 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.2e-08   2.4e-05      50     146 ..     110     201 ..     106     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.2e-08
                  HHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-S CS
  Pkinase_Tyr  50 eeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisD 146
                  e ++++++  hpni ++ g+++++++   +t ++   + +  L+++  e  t  d+  +   + +G+++L+s ++vH d+  +N++l+e++   i D
   CCE30687.1 110 EAYELLRQHPHPNIAQYRGCIVSDGR---ITGLCFA-NYSMTLQQR-MEVSTPFDKELCLEGIERGIRHLHSLSIVHNDIKPKNIMLDETDRPIIID 201
                  567899****************9998...7777754.567778887.444455555556678**************************988766666 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   4.8e-08   9.6e-05     118     172 ..     158     208 ..     126     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.8e-08
         Kdo 118 elkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlr 172
                   k+  l+ + r i+ lh++ + H d+ +kni+l++++    + ++iDld  +++
  CCE30687.1 158 FDKELCLEGIERGIRHLHSLSIVHNDIKPKNIMLDETD----RPIIIDLDAWQQK 208
                 45666789999**************************9....*******976665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   7.9e-08   0.00016     152     194 ..     166     203 ..     123     205 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7.9e-08
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                  +++  ++l+   + +++H+D++p N+++d++d ++  +iD++
  CCE30687.1 166 GIERGIRHLH---SLSIVHNDIKPKNIMLDETDRPI--IIDLD 203
                 5666778888...79*********************..***97 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     1e-06     0.002     317     363 ..     169     209 ..     153     224 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1e-06
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakels 363
                     +g r L+    i+H+Di  +Ni++      ++++ ++iDLD   + +
      CCE30687.1 169 RGIRHLH-SLSIVHNDIKPKNIMLD-----ETDRPIIIDLDAWQQKG 209
                     3556677.777*************9.....67899******876655 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.1e-05      0.14     107     149 ..     159     202 ..     138     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.1e-05
                 HHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 107 aeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                 ++el  e +e  ++ ++   +vH D+   N+++de  +++iID+
  CCE30687.1 159 DKELCLEGIERGIRHLHSLSIVHNDIKPKNIMLDETdRPIIIDL 202
                 67777888888899999*****************988******7 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     9e-05      0.18     141     170 ..     173     201 ..     138     203 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9e-05
                     HGG-EEEE-S--SGGGEEE.-CTTEEEE-- CS
  Choline_kinase 141 lespvvfcHnDlqegNillnkeekklvlID 170
                     + +++   HnD+ ++Ni+l +e+++ ++ID
      CCE30687.1 173 HLHSLSIVHNDIKPKNIML-DETDRPIIID 201
                     44457888***********.6666666777 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   7.2e-05      0.14     300     324 ..     179     203 ..     171     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.2e-05
  Pox_ser-thr_kin 300 flhvDlkPdniLifdskekliikvk 324
                       +h+D+kP ni++ ++++++ii ++
       CCE30687.1 179 IVHNDIKPKNIMLDETDRPIIIDLD 203
                      69*******************9876 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00016      0.31     157     196 ..     171     210 ..     157     221 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggftaLvragt 196
                  + +L+++ +vh++++++n++lde  + ++ +++a  ++g+
   CCE30687.1 171 IRHLHSLSIVHNDIKPKNIMLDETDRPIIIDLDAWQQKGQ 210
                  579********************98888888777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2251.56
//
Query:       CCE30688.1  [L=510]
Description: uncharacterized protein CPUR_04537 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-12   45.9   0.0    8.3e-12   45.0   0.0    1.3  1  Pkinase         Protein kinase domain
    1.1e-10   41.4   0.1    2.2e-10   40.5   0.1    1.4  1  DDE_3           DDE superfamily endonuclease
    4.3e-05   22.9   0.0    7.5e-05   22.1   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00023   21.2   0.6    0.00044   20.2   0.6    1.4  1  APH             Phosphotransferase enzyme family
    0.00041   19.8   0.1    0.00068   19.1   0.1    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
       0.01   14.7   0.3       0.02   13.7   0.3    1.4  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.016   14.8   0.1      0.029   14.0   0.1    1.3  1  RIO1            RIO1 family
      0.074   12.4   0.0       0.13   11.6   0.0    1.3  1  Kinase-like     Kinase-like
       0.14   11.7   0.3       0.29   10.7   0.2    1.6  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   4.2e-15   8.3e-12      45     164 ..     251     368 ..     239     392 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 4.2e-15
                 HHHHHHHHHHHS...CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE CS
     Pkinase  45 vlrEikilkklk...hpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKi 139
                 +l+E++  + lk   hpniv++ +++ ++d+++ ++l   + + l +++ +    ++ +   ++  i +g+++lHs gi+H D+ p+Ni++de +   i
  CCE30688.1 251 ILHEVEAYELLKrhpHPNIVEYRGCVVRDDRITgICLAKYKMT-LSERMAD---STPFDKDMFLDGIEHGIRHLHSLGIVHNDINPANIMLDELDRPII 345
                 667777666666666****************996777666644.5555554...677777899*****************************9999*** PP

                 -SGTTSEESSSSCSBCTTTSCGGGS CS
     Pkinase 140 tDFGlakelessskltsfvgtseYl 164
                 +DF+  ++  +  +l    gts ++
  CCE30688.1 346 IDFDAWQKNGQ--ELGITKGTSGWM 368
                 ***97655433..355556666665 PP

>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1   1.1e-13   2.2e-10      82     137 ..       7      59 ..       3      63 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1.1e-13
       DDE_3  82 vlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrr 137
                 ++i  n ++H+++ +++ +e+   +++ l +PpySP+lN iE++ws++k++++k r
  CCE30688.1   7 IFIHENEQVHRARNVKKCLED--LGVTALAWPPYSPDLNHIENLWSYIKQQIFK-R 59 
                 7888999**************..*****************************99.3 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.8e-08   7.5e-05      50     148 ..     256     349 ..     245     367 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.8e-08
                  HHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr  50 eeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf 147
                  e ++++k+  hpniv++ g++++++++  +     + +L++ + ++     t  d+  f   + +G+++L+s  +vH d+   N++l+e +   i Df
   CCE30688.1 256 EAYELLKRHPHPNIVEYRGCVVRDDRITGICLAKYKMTLSERMADS-----TPFDKDMFLDGIEHGIRHLHSLGIVHNDINPANIMLDELDRPIIIDF 348
                  557899999*************999977776666666777777666.....5666667888999*************************998888888 PP

                  T CS
  Pkinase_Tyr 148 G 148
                   
   CCE30688.1 349 D 349
                  5 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.6   2.2e-07   0.00044     158     194 ..     318     349 ..     292     353 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.2e-07
                 HH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 158 allpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 ++l+   + +++H+D++p N+++d+ d ++  +iDf+
  CCE30688.1 318 RHLH---SLGIVHNDINPANIMLDELDRPI--IIDFD 349
                 6777...799**************9999**..****8 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   3.4e-07   0.00068     122     167 ..     308     349 ..     292     356 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.4e-07
         Kdo 122 allkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 + l  +   i+ lh++g+ H d+++ ni+l++ +    + ++iD+d
  CCE30688.1 308 MFLDGIEHGIRHLHSLGIVHNDINPANIMLDELD----RPIIIDFD 349
                 5566677789***********************9....9******9 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.3     1e-05      0.02     313     360 ..     310     352 ..     306     369 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1e-05
  Pkinase_fungal 313 rDaIk.ghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlak 360
                      D I+ g r L+   gi+H+Di   Ni++      + ++ ++iD+D   
      CCE30688.1 310 LDGIEhGIRHLH-SLGIVHNDINPANIMLD-----ELDRPIIIDFDAWQ 352
                     555543779999.99**************9.....67888999999755 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.5e-05     0.029     104     149 ..     302     348 ..     245     354 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 104 eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                 +  +++++ + +e+ ++ ++  g+vH D++  N+++de  +++iID+
  CCE30688.1 302 TPFDKDMFLDGIEHGIRHLHSLGIVHNDINPANIMLDELdRPIIIDF 348
                 34567888899999999999*****************977******8 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.3e-05      0.13     158     198 ..     318     358 ..     316     367 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.3e-05
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtkv 198
                   +L+++g+vh+++++ n++lde  + ++ +f+a  + g++ 
   CCE30688.1 318 RHLHSLGIVHNDINPANIMLDELDRPIIIDFDAWQKNGQEL 358
                  58*********************999999999999998765 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00014      0.29     144     172 ..     322     349 ..     289     389 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
                     -EEEE-S--SGGGEEE.-CTTEEEE--GT CS
  Choline_kinase 144 pvvfcHnDlqegNillnkeekklvlIDFE 172
                     ++   HnD+ + Ni+l +e ++ ++IDF 
      CCE30688.1 322 SLGIVHNDINPANIML-DELDRPIIIDFD 349
                     46778***********.88888899***7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 4004.12
//
Query:       CCE30689.1  [L=262]
Description: uncharacterized protein CPUR_04538 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-09   37.6   0.0    2.2e-09   37.1   0.0    1.1  1  Pkinase         Protein kinase domain
    3.1e-06   27.3   0.1      5e-06   26.6   0.1    1.3  1  APH             Phosphotransferase enzyme family
    7.3e-05   22.2   0.1    0.00012   21.5   0.0    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00058   19.5   0.0     0.0011   18.6   0.0    1.3  1  RIO1            RIO1 family
     0.0075   15.6   0.0      0.079   12.3   0.0    2.0  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.013   14.3   0.1      0.018   13.8   0.1    1.1  1  Pkinase_fungal  Fungal protein kinase
      0.018   14.3   0.0      0.027   13.7   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
      0.035   13.7   0.0      0.063   12.9   0.0    1.4  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   9.6e-13   2.2e-09      57     146 ..      97     183 ..      91     199 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 9.6e-13
                 CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSE CS
     Pkinase  57 hpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlak 146
                  pniv++ +++ ++ ++  l+l   + +    l+er  + ++ +   +++ + +g+++lHs gi+H D+ p+Ni++de +   i+DF+  +
  CCE30689.1  97 IPNIVEYRGCVVTEGRISgLCLAKYKMT----LYERMEAGTPFDKDLFLEGVERGVRHLHSLGIVHNDINPSNIMFDEMDRPVIIDFDCWQ 183
                 5899999999999888886777666644....4444445677778899*****************************9999******9755 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1   2.2e-09     5e-06     158     195 ..     149     181 ..     117     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.2e-09
                 HH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT CS
         APH 158 allpgelptvllHgDlhpgNllvdpddgrvtGviDfed 195
                 ++l    + +++H+D++p N+++d+ d +v  +iDf++
  CCE30689.1 149 RHL---HSLGIVHNDINPSNIMFDEMDRPV--IIDFDC 181
                 344...4799**************9999*9..*****8 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.5e-08   0.00012     124     167 ..     141     180 ..      71     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.5e-08
         Kdo 124 lkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 l+ v r ++ lh++g+ H d+++ ni++++ +    + ++iD+d
  CCE30689.1 141 LEGVERGVRHLHSLGIVHNDINPSNIMFDEMD----RPVIIDFD 180
                 6788899************************9....9******9 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.9e-07    0.0011      68     149 ..      93     179 ..      88     184 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.9e-07
                 TT--S--EEEEETTEEEEE--EETTEEGGBHHHCG.-...HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1  68 agvpvPkpielkrhvlvmefigedgvaapklkdve.e...eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                 +++p+P+ +e++  v+    i+   +a +k+  +e +   +  +++l+ e +e   + ++  g+vH D++  N+++de  ++viID+
  CCE30689.1  93 MHIPIPNIVEYRGCVVTEGRISGLCLAKYKMTLYErMeagTPFDKDLFLEGVERGVRHLHSLGIVHNDINPSNIMFDEMdRPVIIDF 179
                 578999999999999999999965566666666664334455678889999999999999*****************987******8 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.091     2e+02      94     130 ..      31      67 ..      15      80 .. 0.86
   2 !   12.3   0.0   3.5e-05     0.079     157     189 ..     148     180 ..     140     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.091
  Kinase-like  94 kkkpfiqlkskesiywvvnallllpaasvdleilnkv 130
                  +k  +i + ++++ +w    l l + + +dle l k+
   CCE30689.1  31 NKTVMIIRGKDNEFFWATTKLKLTKTSTLDLEKLDKI 67 
                  6778888999999******************999874 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.5e-05
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggft 189
                  + +L+++g+vh+++++ n+++de  + ++ +f+
   CCE30689.1 148 VRHLHSLGIVHNDINPSNIMFDEMDRPVIIDFD 180
                  789*******************98877777775 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   8.2e-06     0.018     317     359 ..     146     182 ..     138     198 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.2e-06
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDla 359
                     +g r L+   gi+H+Di   Ni++      + ++ ++iD+D  
      CCE30689.1 146 RGVRHLH-SLGIVHNDINPSNIMFD-----EMDRPVIIDFDCW 182
                     6789999.9***************9.....5678899999875 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.2e-05     0.027      58     147 ..      95     179 ..      63     188 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
                  S-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr  58 lkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf 147
                  +  pniv++ g+++ e+++     ++   + +  L ++  e+ t  d+  f   v +G+++L+s  +vH d+   N++ +e +   i Df
   CCE30689.1  95 IPIPNIVEYRGCVVTEGRIS---GLC-LAKYKMTLYER-MEAGTPFDKDLFLEGVERGVRHLHSLGIVHNDINPSNIMFDEMDRPVIIDF 179
                  56677777777777666633...222.22333334444.33445555666888999************************9998888888 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.8e-05     0.063     144     172 ..     153     180 ..     122     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
                     -EEEE-S--SGGGEEE.-CTTEEEE--GT CS
  Choline_kinase 144 pvvfcHnDlqegNillnkeekklvlIDFE 172
                     ++   HnD+ ++Ni++ +e ++ v+IDF 
      CCE30689.1 153 SLGIVHNDINPSNIMF-DEMDRPVIIDFD 180
                     46778***********.88888899**96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1922.90
//
Query:       CCE30690.1  [L=340]
Description: uncharacterized protein CPUR_04539 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-11   43.1   0.0    4.2e-11   42.7   0.0    1.2  1  Pkinase         Protein kinase domain
      2e-06   27.3   0.0    2.9e-06   26.8   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    1.3e-05   25.3   0.2    1.9e-05   24.7   0.2    1.2  1  APH             Phosphotransferase enzyme family
     0.0014   18.0   0.0     0.0026   17.2   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0024   17.5   0.0     0.0036   16.9   0.0    1.2  1  RIO1            RIO1 family
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.019   14.3   0.0    1.2  1  Kinase-like     Kinase-like
      0.016   14.0   0.1      0.016   14.0   0.1    1.4  2  Pkinase_fungal  Fungal protein kinase
       0.12   12.0   0.0       0.17   11.4   0.0    1.4  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.9e-14   4.2e-11      43     144 ..      98     199 ..      86     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.9e-14
                 HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEE CS
     Pkinase  43 kkvlrEikilkklk...hpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgel 137
                 + +l+Ei+  + l+   hpniv++ +++ ++ +++ ++l   + + l++++ +    ++ +   +++ i +g+++lHs gi+H Dl p+N+++de +  
  CCE30690.1  98 DLLLHEIEGYELLRrhpHPNIVEYRGCVVQDGHITgICLAKYKMN-LDERMAD---STPFDKDLFLEGIERGIRHLHSLGIVHNDLSPDNVMLDELDRP 192
                 55666776555444445****************997776666644.7777765...566667789*****************************9999* PP

                 EE-SGTT CS
     Pkinase 138 KitDFGl 144
                  i+DF+ 
  CCE30690.1 193 IIIDFDS 199
                 *****86 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.3e-09   2.9e-06      51     147 ..     106     197 ..      84     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.3e-09
                  HHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr  51 eakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf 147
                   ++++++  hpniv++ g++++++++  +     + +L++ + ++     t  d+  f   + +G+++L+s  +vH dl+  Nv+l+e +   i Df
   CCE30690.1 106 GYELLRRHPHPNIVEYRGCVVQDGHITGICLAKYKMNLDERMADS-----TPFDKDLFLEGIERGIRHLHSLGIVHNDLSPDNVMLDELDRPIIIDF 197
                  46789999*****************88888888888899988887.....55566678899**************************9888888888 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.2   8.7e-09   1.9e-05     153     194 ..     162     198 ..     133     202 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 8.7e-09
                 HHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 153 laalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 +++  ++l+   + +++H+Dl+p+N+++d+ d ++  +iDf+
  CCE30690.1 162 IERGIRHLH---SLGIVHNDLSPDNVMLDELDRPI--IIDFD 198
                 556667778...79***************9999**..****9 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.1e-06    0.0026     124     167 ..     159     198 ..     141     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.1e-06
         Kdo 124 lkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 l+ + r i+ lh++g+ H dl + n++l++ +    + ++iD+d
  CCE30690.1 159 LEGIERGIRHLHSLGIVHNDLSPDNVMLDELD----RPIIIDFD 198
                 6778899************************9....99*****9 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.6e-06    0.0036     106     149 ..     153     197 ..     102     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 106 eaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                  +++l+ e +e  ++ ++  g+vH DLS  Nv++de  +++iID+
  CCE30690.1 153 FDKDLFLEGIERGIRHLHSLGIVHNDLSPDNVMLDELdRPIIIDF 197
                 457788888999999999*****************977******8 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.3e-06     0.019     158     199 ..     167     208 ..     158     228 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.3e-06
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtkvv 199
                   +L+++g+vh+++++dn++lde  + ++ +f++  r+g+k  
   CCE30690.1 167 RHLHSLGIVHNDLSPDNVMLDELDRPIIIDFDSWGRDGQKFA 208
                  69************************************9975 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   7.2e-06     0.016     318     357 ..     165     198 ..     156     214 .. 0.86
   2 ?   -3.9   0.1       1.9   4.3e+03     249     251 ..     262     264 ..     236     298 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.2e-06
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilitdskkegerkglLiDLD 357
                     g r L+   gi+H+D S +N+++      + ++ ++iD+D
      CCE30690.1 165 GIRHLH-SLGIVHNDLSPDNVMLD-----ELDRPIIIDFD 198
                     678999.99**************9.....56788888888 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.9
  Pkinase_fungal 249 ssk 251
                     s++
      CCE30690.1 262 SQT 264
                     111 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.7e-05      0.17     144     172 ..     171     198 ..     137     242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.7e-05
                     -EEEE-S--SGGGEEE.-CTTEEEE--GT CS
  Choline_kinase 144 pvvfcHnDlqegNillnkeekklvlIDFE 172
                     ++   HnDl + N++l +e ++ ++IDF 
      CCE30690.1 171 SLGIVHNDLSPDNVML-DELDRPIIIDFD 198
                     46778***********.88888899**95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2489.01
//
Query:       CCE30691.1  [L=99]
Description: uncharacterized protein CPUR_04540 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-09   37.0   0.1    2.9e-09   36.7   0.1    1.1  1  Pkinase         Protein kinase domain
    1.6e-05   24.6   0.4    2.1e-05   24.2   0.4    1.2  1  RIO1            RIO1 family
    5.4e-05   23.2   1.3    7.2e-05   22.8   1.3    1.1  1  APH             Phosphotransferase enzyme family
      8e-05   21.6   0.2    9.5e-05   21.3   0.2    1.1  1  Pkinase_fungal  Fungal protein kinase
    0.00046   19.6   0.0    0.00056   19.3   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0011   18.4   0.0     0.0012   18.2   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
  ------ inclusion threshold ------
      0.032   13.8   2.6      0.033   13.8   1.6    1.5  2  Choline_kinase  Choline/ethanolamine kinase
      0.048   13.0   0.0       0.05   12.9   0.0    1.1  1  Kinase-like     Kinase-like
       0.15   12.1   0.1       0.25   11.5   0.1    1.3  1  LRR_6           Leucine Rich repeat


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.1   1.4e-12   2.9e-09     108     183 ..      19      89 ..      14      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.4e-12
                 HHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHH CS
     Pkinase 108 legleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWsl 183
                   g+++lHs +i+H D+ p Ni++de+++  i+DF+  ++  +  +l +  g++ +     ++e+ey   + D++sl
  CCE30691.1  19 ELGIRHLHSLNIVHNDISPYNIMLDETDHPVIIDFDSWQQNGQ--ELGTKKGSRGWS----IEEEEYaRFENDIYSL 89 
                 569*********************************8776555..478888999885....6556665777777776 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.4     1e-08   2.1e-05     120     149 ..      23      53 ..      14      62 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1e-08
                 HHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 120 klykeaglvHaDLSeyNvlvded.kvviIDv 149
                 + ++  ++vH D+S yN+++de  ++viID+
  CCE30691.1  23 RHLHSLNIVHNDISPYNIMLDETdHPVIIDF 53 
                 5677899**************988******8 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   1.3   3.6e-08   7.2e-05     165     194 ..      27      54 ..      18      57 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.6e-08
                 -EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 +  ++H+D++p N+++d++d++v  +iDf+
  CCE30691.1  27 SLNIVHNDISPYNIMLDETDHPV--IIDFD 54 
                 4679*******************..****8 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2   4.8e-08   9.5e-05     318     361 ..      21      58 ..      16      73 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.8e-08
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlake 361
                     g r L+   +i+H+DiS +Ni++      ++++ ++iD+D   +
      CCE30691.1  21 GIRHLH-SLNIVHNDISPYNIMLD-----ETDHPVIIDFDSWQQ 58 
                     678999.9***************9.....557779999987655 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.8e-07   0.00056     129     169 ..      20      56 ..      12      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.8e-07
         Kdo 129 rliaklhragvnHadlyaknillqqeeeeeaeiwliDldka 169
                   i+ lh++++ H d+ + ni+l++++    + ++iD+d  
  CCE30691.1  20 LGIRHLHSLNIVHNDISPYNIMLDETD----HPVIIDFDSW 56 
                 569***********************9....*******965 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.9e-07    0.0012     113     148 ..      19      54 ..      15      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.9e-07
                  HHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STT CS
  Pkinase_Tyr 113 AkGmeyLeskklvHrdlaarNvLlsenkvvkisDfG 148
                    G+++L+s ++vH d++  N++l+e+++  i Df 
   CCE30691.1  19 ELGIRHLHSLNIVHNDISPYNIMLDETDHPVIIDFD 54 
                  5699************************99999996 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.6   1.7e-05     0.033     143     171 ..      26      53 ..       6      61 .. 0.85
   2 ?   -0.8   0.0      0.49   9.8e+02      98     137 ..      54      92 ..      53      97 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.7e-05
                     G-EEEE-S--SGGGEEE.-CTTEEEE--G CS
  Choline_kinase 143 spvvfcHnDlqegNillnkeekklvlIDF 171
                     ++++  HnD+ + Ni+l +e+++ v+IDF
      CCE30691.1  26 HSLNIVHNDISPYNIML-DETDHPVIIDF 53 
                     568889***********.88888899**9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.49
                     HHHHHCCS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHHH CS
  Choline_kinase  98 qkwllnkeaqtkakkekkkkqlklinledlekeleklekl 137
                     ++w +++ +++ +kk ++  ++++ +++++e+ + +l k+
      CCE30691.1  54 DSW-QQNGQELGTKKGSRGWSIEEEEYARFENDIYSLSKI 92 
                     567.666677777888888888888888888888877765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.5e-05      0.05     158     199 ..      23      64 ..      18      87 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtkvv 199
                   +L+++ +vh+++++ n++lde    ++ +f++  + g++  
   CCE30691.1  23 RHLHSLNIVHNDISPYNIMLDETDHPVIIDFDSWQQNGQELG 64 
                  59********************99999999999888887665 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00012      0.25       3      16 ..      23      36 ..      21      37 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
       LRR_6  3 thLteLdLsgNdIg 16
                +hL +L++ +NdI+
  CCE30691.1 23 RHLHSLNIVHNDIS 36
                7************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 758.28
//
Query:       CCE30692.1  [L=1539]
Description: related to retrotransposon HobS hobase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-56  190.7   0.0      5e-56  190.1   0.0    1.3  1  RVT_2            Reverse transcriptase (RNA-dependent DNA pol
      1e-07   31.7   0.1    2.1e-07   30.7   0.1    1.5  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type
    0.00011   22.4   0.2    0.00068   19.8   0.0    2.3  2  rve              Integrase core domain
     0.0019   18.0   0.0     0.0058   16.5   0.0    1.9  1  gag_pre-integrs  GAG-pre-integrase domain


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.1   0.0   1.1e-59     5e-56       6     240 ..    1058    1293 ..    1053    1295 .. 0.92

  Alignments for each domain:
  == domain 1  score: 190.1 bits;  conditional E-value: 1.1e-59
       RVT_2    6 vslPkdrkaigsrWvftkkkddl.kevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkqPp 101 
                  v  Pk+   ++ +Wvft k++   +  +ykarlva+Gfsq+ g+dyd++faP +r+d++rL+la+ a e+    + d++ af +++l+ee+y+ +P+
  CCE30692.1 1058 VVPPKGANLVSCKWVFTVKTNPDgTLERYKARLVARGFSQVHGKDYDQTFAPTVRMDTLRLFLAMVAAEDDECSHYDIKNAFTESDLKEEIYLEPPT 1154
                  66799**************99776899********************************************************************** PP

       RVT_2  102 GfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakkfklkdlgk 198 
                  G  +   +++ +k  +slyGlkqa++ Wn+ i++ L   gf +s a   ++++++ + k  + +yvdd++ a++++++l+ +  +l+k+fk k+lg+
  CCE30692.1 1155 GVSVK--KGRKWKALRSLYGLKQAARDWNQLIKDELISWGFIQSLADPCMFIHADNSVK--LLVYVDDIVAAAKNQGELDWFYSKLSKRFKAKNLGE 1247
                  **999..8999*****************************************9955555..557********************************* PP

       RVT_2  199 vskfLGieiaq..eaggiklsladyiakvvkkfeltda..ktvatP 240 
                  ++k LG  +++  ++ ++++ +++y+++v++kf++t+   k++++P
  CCE30692.1 1248 IEKILGAGVVRdrKTRTLEIDQEQYLKSVLDKFGITQEthKPKTVP 1293
                  ********9985567788899**************97511455666 PP

>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1   4.7e-11   2.1e-07       1      90 [.      97     186 ..      97     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 4.7e-11
  Retrotran_gag_2   1 wkkkdakalalIvlsisdsllelvkeektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkidd 90 
                      wk+ +ak+l++++  +s++    ++e +ta++vW  L++ y k+sa+   +++  l+s+ ++++  +    +kl+el +++ a++ ++++
       CCE30692.1  97 WKQANAKCLNIMLDGLSSDDAVIIDEYETAAAVWAQLNKRYAKTSASYANQYMASLHSFVYDQEAGIDGAWTKLKELRRKIVAANPDMKE 186
                      99***************************************************************************9999986665554 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.5e-07   0.00068      46     116 ..     618     687 ..     607     689 .. 0.90
   2 ?   -1.5   0.1      0.62   2.8e+03      50      90 ..     955     993 ..     944     998 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.5e-07
         rve  46 mdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdnGkvErfhrtlk 116
                 +da ++l+ +++ v+++  ++++rv+sDn++e   ka  ++  + g+  + t  +++++nG +Er ++t++
  CCE30692.1 618 SDAYQALKNWKVGVEKQTDKKIKRVRSDNAPELL-KAANDWHIEDGVVAQSTTIASSHQNGPAERSIQTVE 687
                 567778888888999999999*************.9********************************986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.62
         rve  50 tvlalleravarfggvepervlsDngseytskafrefladl 90 
                 tv++  +  +  ++    +r lsD   e ++k++r+++a+l
  CCE30692.1 955 TVTGSEQPRYFTRAT--RKRALSDTDEESIAKRVRAMIAHL 993
                 444444444444444..68999***************9997 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-06    0.0058      27      66 ..     543     584 ..     524     585 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
  gag_pre-integrs  27 WHrRLGHpsfsrlkkLfkkgllpglki..sksevCeaCqlgK 66 
                       HrR++H++ +++++L k   l ++ +   +  +C++C ++K
       CCE30692.1 543 YHRRFAHLGPDKIRNLHKVTTLQKKVKipADLDICDVCSITK 584
                      6*****************888877654346799******999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.47
# Mc/sec: 9913.45
//
Query:       CCE30693.1  [L=194]
Description: uncharacterized protein CPUR_04542 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-08   34.5   0.0    1.5e-08   34.3   0.0    1.1  1  Pkinase         Protein kinase domain
    4.1e-05   23.0   0.1    5.7e-05   22.6   0.1    1.1  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00014   21.9   1.7     0.0002   21.4   1.7    1.2  1  APH             Phosphotransferase enzyme family
    0.00022   20.6   0.0     0.0003   20.2   0.0    1.1  1  Kinase-like     Kinase-like
     0.0034   16.7   0.0     0.0045   16.3   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0047   15.8   0.1     0.0047   15.8   0.1    1.5  2  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.012   15.2   0.4      0.019   14.6   0.4    1.3  1  Choline_kinase  Choline/ethanolamine kinase
      0.068   12.8   0.1       0.11   12.1   0.1    1.2  1  RIO1            RIO1 family
       0.11   12.8   1.3       0.17   12.3   1.3    1.2  1  TYA             TYA transposon protein
        0.2   10.7   0.1       0.27   10.2   0.1    1.1  1  Seadorna_VP7    Seadornavirus VP7


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   8.4e-12   1.5e-08     103     162 ..      12      71 ..       5     118 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 8.4e-12
                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGG CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtse 162
                 +++ + +g+++lHs gi+H D+ p+N+++de + l i+DF+   +  ++ +     gt e
  CCE30693.1  12 FLEGVERGVRHLHSLGIVHNDINPDNVMLDELDRLIIIDFDSWGRKGQKLEDGMKKGTLE 71 
                 6778999***********************9999******98766666655555555555 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   3.2e-08   5.7e-05     124     168 ..      13      53 ..       8      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.2e-08
         Kdo 124 lkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldk 168
                 l+ v r ++ lh++g+ H d+++ n++l++ +    ++++iD+d 
  CCE30693.1  13 LEGVERGVRHLHSLGIVHNDINPDNVMLDELD----RLIIIDFDS 53 
                 6678899************************9....*******96 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   1.7   1.1e-07    0.0002     159     194 ..      22      52 ..      10      56 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.1e-07
                 H--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 159 llpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 +l+   + +++H+D++p+N+++d+ d  +  +iDf+
  CCE30693.1  22 HLH---SLGIVHNDINPDNVMLDELDRLI--IIDFD 52 
                 455...799**************666666..****9 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.7e-07    0.0003     157     199 ..      20      62 ..      13      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.7e-07
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggftaLvragtkvv 199
                  + +L+++g+vh+++++dn++lde  +l++ +f++  r+g+k  
   CCE30693.1  20 VRHLHSLGIVHNDINPDNVMLDELDRLIIIDFDSWGRKGQKLE 62 
                  789***********************************99975 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.5e-06    0.0045     111     148 ..      15      52 ..       8      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.5e-06
                  HHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STT CS
  Pkinase_Tyr 111 qvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfG 148
                   v +G+++L+s  +vH d+   Nv+l+e +   i Df 
   CCE30693.1  15 GVERGVRHLHSLGIVHNDINPDNVMLDELDRLIIIDFD 52 
                  5779****************************9*9995 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.6e-06    0.0047     317     363 ..      18      58 ..      11      75 .. 0.77
   2 ?   -1.9   0.1       0.6   1.1e+03     247     248 ..     132     140 ..      90     188 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.6e-06
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakels 363
                     +g r L+   gi+H+Di  +N+++      + ++ ++iD+D     +
      CCE30693.1  18 RGVRHLH-SLGIVHNDINPDNVMLD-----ELDRLIIIDFDSWGRKG 58 
                     6789999.9***************9.....67899999999765555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.6
  Pkinase_fungal 247 e.......l 248
                     +       +
      CCE30693.1 132 QdapdsigT 140
                     033333332 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.4   1.1e-05     0.019     145     171 ..      26      51 ..      12      53 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
                     EEEE-S--SGGGEEE.-CTTEEEE--G CS
  Choline_kinase 145 vvfcHnDlqegNillnkeekklvlIDF 171
                     +   HnD+ + N++l +e ++l++IDF
      CCE30693.1  26 LGIVHNDINPDNVML-DELDRLIIIDF 51 
                     6678***********.9********** PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   6.1e-05      0.11     111     149 ..      12      51 ..       5      54 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.1e-05
                 HHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 111 yeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                 + e +e   + ++  g+vH D++  Nv++de  +++iID+
  CCE30693.1  12 FLEGVERGVRHLHSLGIVHNDINPDNVMLDELdRLIIIDF 51 
                 556666667778899***************9769*****8 PP

>> TYA  TYA transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.3   9.3e-05      0.17      11      73 ..     101     167 ..      92     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.3e-05
         TYA  11 qtnqdpldvsaskleefdkastkansq....qettpassavpenhhhaspqaaqvpspqnGpyqqqr 73 
                  +++dpl  s+s   +  ka t a +q    q++  +  + pe h     q + +p+p  G  +q+ 
  CCE30693.1 101 SSSRDPLTESTSAATNASKAPTPATTQiggpQDAPDSIGTTPESHVEGEEQNTTTPPPAKGTEKQDE 167
                 5789***************9888877744435655566789********************998864 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00015      0.27     158     186 ..      22      50 ..      11      54 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
  Seadorna_VP7 158 hsestnllhGDcnpenlmcDknGylklvD 186
                   h  s +++h D+np+n+m D+   l ++D
    CCE30693.1  22 HLHSLGIVHNDINPDNVMLDELDRLIIID 50 
                   5568899***************9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1487.61
//
Query:       CCE30694.1  [L=350]
Description: uncharacterized protein CPUR_04543 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-11   42.1   0.0    8.8e-11   41.7   0.0    1.1  1  Pkinase         Protein kinase domain
    2.8e-06   26.8   0.0      4e-06   26.3   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    1.6e-05   25.0   1.3    2.6e-05   24.3   1.0    1.5  2  APH             Phosphotransferase enzyme family
     0.0022   17.6   0.0     0.0033   17.1   0.0    1.2  1  RIO1            RIO1 family
     0.0027   17.1   0.0     0.0041   16.5   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0078   15.0   0.0      0.013   14.3   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.013   14.8   0.0      0.019   14.3   0.0    1.1  1  Kinase-like     Kinase-like
       0.13   11.8   0.0       0.19   11.3   0.0    1.3  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   3.9e-14   8.8e-11      43     144 ..     106     207 ..      87     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 3.9e-14
                 HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEE CS
     Pkinase  43 kkvlrEikilkklk...hpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgel 137
                 + +l+E++  + l+   hpniv++ +++ ++ +++ ++l   + + l +++e++   ++ +   +++ i +g+++lHs gi+H Dl p+N+++de +  
  CCE30694.1 106 DLILHEVEAYELLRrhpHPNIVEYRGCVVRDGRITgICLAKYKMT-LYERIEDS---TPLNKDLFLAGIERGIRHLHSLGIVHNDLSPDNVMLDELDRP 200
                 56778887777776667*************999997777777755.77777764...444556899****************************9999* PP

                 EE-SGTT CS
     Pkinase 138 KitDFGl 144
                  i+DF+ 
  CCE30694.1 201 VIIDFDS 207
                 *****85 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.8e-09     4e-06      50     147 ..     113     205 ..      92     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.8e-09
                  HHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr  50 eeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf 147
                  e ++++++  hpniv++ g++++++++  +     + +L + ++++     t  ++  f + + +G+++L+s  +vH dl+  Nv+l+e +   i Df
   CCE30694.1 113 EAYELLRRHPHPNIVEYRGCVVRDGRITGICLAKYKMTLYERIEDS-----TPLNKDLFLAGIERGIRHLHSLGIVHNDLSPDNVMLDELDRPVIIDF 205
                  456889999*************999987777666666777777776.....3444445788999************************9888888888 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.7   3.8e+03      37      82 ..     108     160 ..     101     165 .. 0.62
   2 !   24.3   1.0   1.2e-08   2.6e-05     153     194 ..     170     206 ..     144     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE.......EEEEEE----EE- CS
         APH  37 irrevallrlLakagvpvPevlagdtddeeigl.......lfalieyvpgrsl 82 
                 i  ev+ + lL++++ p  + + g+  ++++ +        + l+e+++  ++
  CCE30694.1 108 ILHEVEAYELLRRHPHPNIVEYRGCVVRDGRITgiclakyKMTLYERIEDSTP 160
                 56788888888888554434444454444444455666667777777666665 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 1.2e-08
                 HHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 153 laalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 +++  ++l+   + +++H+Dl+p+N+++d+ d +v  +iDf+
  CCE30694.1 170 IERGIRHLH---SLGIVHNDLSPDNVMLDELDRPV--IIDFD 206
                 555567777...79***************999999..****9 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-06    0.0033     106     149 ..     161     205 ..     109     208 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 106 eaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                  +++l+   +e  ++ ++  g+vH DLS  Nv++de  ++viID+
  CCE30694.1 161 LNKDLFLAGIERGIRHLHSLGIVHNDLSPDNVMLDELdRPVIIDF 205
                 456677777888889999*****************977******8 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.8e-06    0.0041     126     167 ..     169     206 ..     150     216 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.8e-06
         Kdo 126 avgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                  + r i+ lh++g+ H dl + n++l++ +    + ++iD+d
  CCE30694.1 169 GIERGIRHLHSLGIVHNDLSPDNVMLDELD----RPVIIDFD 206
                 57788************************9....9******9 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.9e-06     0.013     318     358 ..     173     207 ..     165     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.9e-06
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDl 358
                     g r L+   gi+H+D S +N+++      + ++ ++iD+D 
      CCE30694.1 173 GIRHLH-SLGIVHNDLSPDNVMLD-----ELDRPVIIDFDS 207
                     678999.9***************9.....678889999986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.6e-06     0.019     157     202 ..     174     218 ..     162     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.6e-06
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlse 202
                  + +L+++g+vh+++++dn++lde  + ++ +f++  r g+k   + 
   CCE30694.1 174 IRHLHSLGIVHNDLSPDNVMLDELDRPVIIDFDSWGREGQKFE-NG 218
                  579***********************************99987.54 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.6e-05      0.19     144     172 ..     179     206 ..     147     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.6e-05
                     -EEEE-S--SGGGEEE.-CTTEEEE--GT CS
  Choline_kinase 144 pvvfcHnDlqegNillnkeekklvlIDFE 172
                     ++   HnDl + N++l +e ++ v+IDF 
      CCE30694.1 179 SLGIVHNDLSPDNVML-DELDRPVIIDFD 206
                     46778***********.88888899**95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.49
# Mc/sec: 2152.02
//
Query:       CCE30695.1  [L=207]
Description: uncharacterized protein CPUR_04544 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.078   13.2   0.1       0.11   12.7   0.1    1.3  1  FYVE_2    FYVE-type zinc finger


Domain annotation for each model (and alignments):
>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   6.3e-06      0.11      25      67 ..      48      90 ..      31     105 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.3e-06
      FYVE_2 25 eeeRlgelkeklekekskrellgnqaklgethCilCleefkll 67
                 ee ++e  ek+ +eks +ell ++ + +  +CilC++e  ++
  CCE30695.1 48 QEEEMEESAEKIAHEKSTHELLMKHPHPNIVRCILCVSEGFFM 90
                57789999****************************9986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1530.77
//
Query:       CCE30696.1  [L=318]
Description: uncharacterized protein CPUR_04545 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-11   44.6   0.0    1.4e-11   44.3   0.0    1.1  1  Pkinase         Protein kinase domain
    2.4e-05   23.7   0.0    3.8e-05   23.1   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    5.9e-05   22.0   0.2    9.7e-05   21.3   0.2    1.3  1  Pkinase_fungal  Fungal protein kinase
    7.7e-05   22.7   0.1    0.00011   22.2   0.1    1.2  1  APH             Phosphotransferase enzyme family
     0.0036   16.7   0.0     0.0052   16.2   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0036   16.9   0.0     0.0052   16.4   0.0    1.2  1  RIO1            RIO1 family
  ------ inclusion threshold ------
      0.019   14.3   0.0       0.03   13.6   0.0    1.2  1  Kinase-like     Kinase-like
      0.066   12.8   0.0      0.093   12.3   0.0    1.3  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   6.1e-15   1.4e-11      50     164 ..     105     214 ..      89     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 6.1e-15
                 HHHHHHSCTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEE CS
     Pkinase  50 kilkklkhpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlake 147
                 ++l++  hpniv++ +++ ++ +++ ++l        ++l+er  + ++ +   ++  i +g+++lHs gi+H D+ p+Ni++de +   i+DF+  ++
  CCE30696.1 105 ELLRRHPHPNIVKYRGCVVSDGRITgICLAKYT----MTLYERMAASTPFDKDLFLDGIERGVRHLHSLGIVHNDISPNNIMLDELDRPVIIDFDAWQN 199
                 6788888*************9999855554444....55666656688889999******************************9999******96543 PP

                 SSSSCSBCTTTSCGGGS CS
     Pkinase 148 lessskltsfvgtseYl 164
                   ++++l    gts ++
  CCE30696.1 200 --NGEELGITKGTSGWM 214
                 ..333356666666665 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.7e-08   3.8e-05      50     147 ..     102     194 ..      91     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.7e-08
                  HHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr  50 eeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf 147
                  e ++++++  hpnivk+ g++++++++  +       +L + + ++     t  d+  f   + +G+++L+s  +vH d++  N++l+e +   i Df
   CCE30696.1 102 EAYELLRRHPHPNIVKYRGCVVSDGRITGICLAKYTMTLYERMAAS-----TPFDKDLFLDGIERGVRHLHSLGIVHNDISPNNIMLDELDRPVIIDF 194
                  567899999*************999976666555555666666655.....55666678899**************************9888888888 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2   4.3e-08   9.7e-05     314     360 ..     157     198 ..     153     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.3e-08
  Pkinase_fungal 314 DaI.kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlak 360
                     D I +g r L+   gi+H+DiS nNi++      + ++ ++iD+D   
      CCE30696.1 157 DGIeRGVRHLH-SLGIVHNDISPNNIMLD-----ELDRPVIIDFDAWQ 198
                     555248899**.****************9.....67888999999755 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   5.1e-08   0.00011     158     194 ..     164     195 ..     133     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.1e-08
                 HH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 158 allpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 ++l+   + +++H+D++p+N+++d+ d +v  +iDf+
  CCE30696.1 164 RHLH---SLGIVHNDISPNNIMLDELDRPV--IIDFD 195
                 4444...79***************999999..****8 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.3e-06    0.0052     126     167 ..     158     195 ..     139     201 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.3e-06
         Kdo 126 avgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                  + r ++ lh++g+ H d+ + ni+l++ +    + ++iD+d
  CCE30696.1 158 GIERGVRHLHSLGIVHNDISPNNIMLDELD----RPVIIDFD 195
                 567889***********************9....9******9 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.3e-06    0.0052     108     149 ..     152     194 ..     109     199 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.3e-06
                 HHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 108 eelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                 ++l+ + +e   + ++  g+vH D+S  N+++de  ++viID+
  CCE30696.1 152 KDLFLDGIERGVRHLHSLGIVHNDISPNNIMLDELdRPVIIDF 194
                 5666777777778888*****************977******8 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.3e-05      0.03     157     196 ..     163     202 ..     155     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggftaLvragt 196
                  + +L+++g+vh++++++n++lde  + ++ +f+a    g+
   CCE30696.1 163 VRHLHSLGIVHNDISPNNIMLDELDRPVIIDFDAWQNNGE 202
                  789********************99999999988777766 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.2e-05     0.093     144     172 ..     168     195 ..     137     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.2e-05
                     -EEEE-S--SGGGEEE.-CTTEEEE--GT CS
  Choline_kinase 144 pvvfcHnDlqegNillnkeekklvlIDFE 172
                     ++   HnD+ ++Ni+l +e ++ v+IDF 
      CCE30696.1 168 SLGIVHNDISPNNIML-DELDRPVIIDFD 195
                     46778***********.88888999***6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2260.56
//
Query:       CCE30697.1  [L=462]
Description: uncharacterized protein CPUR_04546 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-05   23.3   0.1    0.00014   21.7   0.0    1.8  2  DUF4939    Domain of unknown function (DUF4939)
     0.0044   17.0   2.5     0.0079   16.2   2.5    1.5  1  zf-CCHC    Zinc knuckle
  ------ inclusion threshold ------
       0.34   10.7   3.3       0.22   11.3   0.5    2.1  2  zf-CCHC_4  Zinc knuckle


Domain annotation for each model (and alignments):
>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.3e-08   0.00014      28      99 ..     184     255 ..     172     264 .. 0.83
   2 ?   -2.4   0.0      0.69   4.2e+03      46      77 ..     267     298 ..     266     316 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.3e-08
     DUF4939  28 fpetfdGdtdrlpefivqtlsymlvdektfssdalkvtflitrltGealewvlpyikkdspllndyraflae 99 
                  pe f+G+ + +  +iv ++ y+  +  tf ++  ++tf+ +rl+    + v+    ++       r +la 
  CCE30697.1 184 LPEVFEGNKEEFEGWIVVIIDYLHTNRYTFRDEGTRMTFVFSRLKSSPRDMVMSRYTSEEDPYASVREMLAH 255
                 79************************************************9996555444444555555555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.69
     DUF4939  46 tlsymlvdektfssdalkvtflitrltGeale 77 
                 t++y  ++   f+  +  + ++i+r++  a +
  CCE30697.1 267 TTAYRTLNRLRFDIKKDDINYFISRVNTLADK 298
                 66788888889999999999999998876655 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.5   1.3e-06    0.0079       2      18 .]     404     420 ..     403     420 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.3e-06
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 +Cy CG +GH++ +Cp+
  CCE30697.1 404 ACYGCGMTGHLKAECPN 420
                 7***************6 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       0.5     3e+03      24      33 ..     332     341 ..     332     343 .. 0.83
   2 ?   11.3   0.5   3.7e-05      0.22      32      48 ..     403     419 ..     400     420 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.5
   zf-CCHC_4  24 efkYErLrsf 33 
                 e+ YEr  +f
  CCE30697.1 332 EVSYERFTRF 341
                 589***9887 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.7e-05
   zf-CCHC_4  32 sfCyiCgvlGHsdkrCd 48 
                  +Cy Cg+ GH  ++C+
  CCE30697.1 403 GACYGCGMTGHLKAECP 419
                 57**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3512.87
//
Query:       CCE30698.1  [L=117]
Description: uncharacterized protein CPUR_04547, partial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-05   24.9   0.0    2.2e-05   24.3   0.0    1.5  1  Chromo       Chromo (CHRromatin Organisation MOdifier) domain
  ------ inclusion threshold ------
      0.025   14.8   0.0      0.045   14.0   0.0    1.4  1  SelB-wing_2  Elongation factor SelB, winged helix


Domain annotation for each model (and alignments):
>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.4e-09   2.2e-05       1      31 [.      13      45 ..      13      66 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.4e-09
                EEEEEEEEEEEETTEEC..EEEEEEETTSTGGG CS
      Chromo  1 yeVerIidhrtdkdgle..leYlVKWkglpyse 31
                +eVerI+++r+   g +  l+Y V W+gl ++e
  CCE30698.1 13 WEVERILASRVFGRGDNrrLQYQVTWRGLEPDE 45
                79********555555557***********998 PP

>> SelB-wing_2  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     5e-06     0.045       3      18 ..      59      74 ..      57      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5e-06
                 HHHHHHHH-TTS--EE CS
  SelB-wing_2  3 vLaeYHrenPlrpGms 18
                 +L+++Hre+P+  G +
   CCE30698.1 59 TLESFHREYPDAAGPP 74
                 8*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1030.41
//
Query:       CCE30699.1  [L=620]
Description: uncharacterized protein CPUR_04548 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-13   48.8   0.0    1.3e-12   47.6   0.0    1.7  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase
    0.00015   21.4   5.0    0.00022   20.8   3.7    2.0  2  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
       0.81    9.9   7.4        1.9    8.7   3.8    2.7  2  zf-CCHC          Zinc knuckle


Domain annotation for each model (and alignments):
>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   2.2e-16   1.3e-12       2     117 ..     349     460 ..     348     462 .. 0.88

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 2.2e-16
  Exo_endo_phos_2   2 liisvYippsdelenlestlekllselkspkiiilGDfNakhplWgsedtdssargeeLiefleehslsllnllksgptfkssng.sstiDltl 94 
                       i+svY p  +      + ++++++++ + + +++GDfN +hplW++  ++ s   +eL+ef++   l  l ++  ++t++s+++ +stiD  +
       CCE30699.1 349 EIYSVYSPAYE--AAWVTPIQEFMTAPVQGRSVFVGDFNQHHPLWDKAGRT-SPGSDELLEFTTRWRLG-LATPWGETTWRSQGKrDSTIDHAW 438
                      699********..9999**********988*****************6655.7999*************.45555679999998899******* PP

  Exo_endo_phos_2  95 tsdnlalskleleeedlgSDHrp 117
                      +s+++ ++      +  gSDH p
       CCE30699.1 439 ASADVDVD-FLGGADLAGSDHVP 460
                      ******99.555557899***87 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.99   5.9e+03     177     198 ..     170     196 ..     118     196 .. 0.71
   2 !   20.8   3.7   3.7e-08   0.00022      31     233 .]     282     458 ..     236     458 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.99
                    H.....SSCESCETTTTTTTTTTTEB- CS
                    x.....xxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 177 v.....glyllgggptptyvtraggsr 198
                    v      +++ +g++++++ t+a ++r
     CCE30699.1 170 VnprqcYRCYKFGHIAAHCQTPARCGR 196
                    144455678889999999999999887 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 3.7e-08
                    T.....SEEEEEEEBSCTCHHHHHHHHH......TTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE CS
                    x.....xxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  31 a.....DvlgLQEvdddelsriplllal......ggflgasstsptgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni 115
                    +     Dv+++QE  + +  ++p+ +++      ++ ++        ++ ++++g            +  ++ ++++++  l     +        
     CCE30699.1 282 PprrklDVIAFQEPTGIDK-IPPHSSLGpfqlavYAGRT-------AIYVNRQHGT----------EEWSSRTGTDWCSIVLKGIEIYSV------ 353
                    1566669999999777774.3333333245443322222.......2333444444..........555666666666666665554444...... PP

                    CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTHH....SSCESCETTTTTTTTTTTEB-BEEEEEECH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 116 ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapapv....glyllgggptptyvtraggsrlDrilaspa 207
                           +++  +++++ +  e  +a+ +++ +++GDfN ++  +d   +++ g +   +       +  +++g t+++      s++D+++as +
     CCE30699.1 354 -------YSPAYEAAWVTPIQEFMTAPVQGRSVFVGDFNQHHPLWDKAGRTSPGSDELLEFTtrwrLGLATPWGETTWRSQGKRDSTIDHAWASAD 442
                    .......566779999999999999*********************99999999888887746779****************************64 PP

                    HHCCEEEEEEECCHHEECTSSCSSSB CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 208 lalfrsgvlppplalvrrealtlSDH 233
                    + +  +g            +l +SDH
     CCE30699.1 443 VDVDFLGG----------ADLAGSDH 458
                    44444444..........56666999 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.8   0.00031       1.9       1      17 [.     173     189 ..     173     190 .. 0.91
   2 ?    1.7   0.1     0.052   3.1e+02      12      17 ..     230     235 ..     230     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00031
                 SCTSSSSSSSSTTTTST CS
     zf-CCHC   1 rkCynCGepGHiardCp 17 
                 r+Cy+C + GHia  C 
  CCE30699.1 173 RQCYRCYKFGHIAAHCQ 189
                 58***********9995 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.052
                 TTTTST CS
     zf-CCHC  12 iardCp 17 
                 ++r+Cp
  CCE30699.1 230 WSRECP 235
                 8****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 4892.84
//
Query:       CCE30700.1  [L=173]
Description: uncharacterized protein CPUR_04549 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-08   31.9   0.0    1.2e-07   31.4   0.0    1.2  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   6.9e-12   1.2e-07       3      61 ..      66     130 ..      60     139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 6.9e-12
                 -TT.....S-EEE......-THHHHCTB--...........-------HHHH............. CS
       RVT_1   3 Kkg....pgsyRpisllsvdykalnkliakrLkdvl..ekllsenqpgfrpgrstldavedllka 61 
                 K+     +g++Rpislls+ +k+l++++a r + ++  +  l+e q+g r +rst+ a+ +l++ 
  CCE30700.1  66 KPEeyheAGGWRPISLLSIVGKVLEAAVAARVTAAAesNGSLPELQMGNRANRSTEVALSTLTEV 130
                 33378889****************************99999**************9888665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1303.93
//
Query:       CCE30701.1  [L=339]
Description: uncharacterized protein CPUR_04550 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-12   46.6   0.0    3.5e-12   46.3   0.0    1.1  1  Pkinase         Protein kinase domain
    1.2e-05   24.8   0.0    1.7e-05   24.3   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00017   21.6   0.2    0.00027   21.0   0.2    1.2  1  APH             Phosphotransferase enzyme family
    0.00045   19.6   0.1    0.00067   19.1   0.1    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0054   15.6   0.2       0.01   14.6   0.2    1.4  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.028   14.0   0.1      0.043   13.4   0.1    1.2  1  RIO1            RIO1 family
      0.093   12.3   0.6       0.19   11.3   0.4    1.6  2  Choline_kinase  Choline/ethanolamine kinase
       0.12   11.7   0.0       0.18   11.1   0.0    1.2  1  Kinase-like     Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   1.6e-15   3.5e-12      45     164 ..     105     222 ..      93     265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 1.6e-15
                 HHHHHHHHHHHS...CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE CS
     Pkinase  45 vlrEikilkklk...hpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKi 139
                 +l+E++  + lk   hpniv++ +++ ++d+++ ++l   + + l +++ +    ++ +   ++  i +g+++lHs gi+H D+ p+Ni++de +   i
  CCE30701.1 105 ILHEVEAYELLKrhpHPNIVEYRGCVVRDDRITgICLAKYKMT-LSERMAD---STPFDKDMFLDGIERGIRHLHSLGIVHNDINPANIMLDELDCPII 199
                 677777666666666****************996777666644.5555554...677777899*****************************888899* PP

                 -SGTTSEESSSSCSBCTTTSCGGGS CS
     Pkinase 140 tDFGlakelessskltsfvgtseYl 164
                 +DF+  ++  +  +l    gts ++
  CCE30701.1 200 IDFDAWQKNGQ--ELGITKGTSGWM 222
                 ***97655443..355666666665 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   7.6e-09   1.7e-05      50     148 ..     110     203 ..      98     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 7.6e-09
                  HHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr  50 eeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf 147
                  e ++++k+  hpniv++ g++++++++  +     + +L++ + ++     t  d+  f   + +G+++L+s  +vH d+   N++l+e ++  i Df
   CCE30701.1 110 EAYELLKRHPHPNIVEYRGCVVRDDRITGICLAKYKMTLSERMADS-----TPFDKDMFLDGIERGIRHLHSLGIVHNDINPANIMLDELDCPIIIDF 202
                  557899999*************999977776666666777776666.....666666788899**************************999999999 PP

                  T CS
  Pkinase_Tyr 148 G 148
                   
   CCE30701.1 203 D 203
                  5 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2   1.2e-07   0.00027     155     194 ..     169     203 ..     141     207 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.2e-07
                 HHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 155 alaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 +  ++l+   + +++H+D++p N+++d+ d ++  +iDf+
  CCE30701.1 169 RGIRHLH---SLGIVHNDINPANIMLDELDCPI--IIDFD 203
                 4456777...79***************99****..****8 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1     3e-07   0.00067     120     167 ..     160     203 ..     145     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3e-07
         Kdo 120 krallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 k + l  + r i+ lh++g+ H d+++ ni+l++ +      ++iD+d
  CCE30701.1 160 KDMFLDGIERGIRHLHSLGIVHNDINPANIMLDELD----CPIIIDFD 203
                 56677788899**********************998....77899998 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2   4.6e-06      0.01     313     361 ..     164     207 ..     161     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.6e-06
  Pkinase_fungal 313 rDaI.kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlake 361
                      D I +g r L+   gi+H+Di   Ni++      + ++ ++iD+D   +
      CCE30701.1 164 LDGIeRGIRHLH-SLGIVHNDINPANIMLD-----ELDCPIIIDFDAWQK 207
                     5566248899**.****************9.....679999999997555 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.9e-05     0.043     104     149 ..     156     202 ..      98     208 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 104 eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                 +  +++++ + +e  ++ ++  g+vH D++  N+++de   ++iID+
  CCE30701.1 156 TPFDKDMFLDGIERGIRHLHSLGIVHNDINPANIMLDELdCPIIIDF 202
                 34567888899999999999*****************9758899997 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   8.4e-05      0.19     144     173 ..     176     204 ..     142     243 .. 0.78
   2 ?   -2.2   0.0       1.1   2.6e+03      89     121 ..     233     265 ..     224     274 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.4e-05
                     -EEEE-S--SGGGEEE.-CTTEEEE--GTT CS
  Choline_kinase 144 pvvfcHnDlqegNillnkeekklvlIDFEY 173
                     ++   HnD+ + Ni+l +e ++ ++IDF  
      CCE30701.1 176 SLGIVHNDINPANIML-DELDCPIIIDFDA 204
                     46778***********.999999*****75 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
                     SS-HHHHHHHHHHHCCS.TT..ECHHGGCCHCC CS
  Choline_kinase  89 espslwktmqkwllnkeaqtkakkekkkkqlkl 121
                     + ++ ++++q+++ + ++ +  ++++++++ ++
      CCE30701.1 233 NDFFAFSKIQEYIYDPSSGKPLSRSTSSNSSQT 265
                     567788999999555555554444444444443 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     8e-05      0.18     158     197 ..     172     211 ..     167     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8e-05
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtk 197
                   +L+++g+vh+++++ n++lde    ++ +f+a  + g++
   CCE30701.1 172 RHLHSLGIVHNDINPANIMLDELDCPIIIDFDAWQKNGQE 211
                  69*******************9888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2509.34
//
Query:       CCE30702.1  [L=233]
Description: uncharacterized protein CPUR_04551 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1878.67
//
Query:       CCE30703.1  [L=280]
Description: uncharacterized protein CPUR_04552 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-11   44.6   0.0    1.5e-11   44.2   0.0    1.1  1  Pkinase         Protein kinase domain
    4.3e-06   26.2   0.0    5.9e-06   25.8   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    6.9e-06   25.6   0.0      1e-05   25.0   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    1.8e-05   24.8   0.3    2.8e-05   24.2   0.3    1.3  1  APH             Phosphotransferase enzyme family
      0.007   15.2   0.0       0.01   14.6   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.013   14.8   0.0      0.019   14.3   0.0    1.1  1  Kinase-like     Kinase-like
      0.053   13.1   0.0      0.073   12.7   0.0    1.2  1  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   5.8e-15   1.5e-11      43     161 ..     106     224 ..      94     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 5.8e-15
                 HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEE CS
     Pkinase  43 kkvlrEikilkklk...hpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgel 137
                 + vl+Ei+  + l+   hpniv++ +++ ++ +++ ++l   +  +l++++++++ l++     +++ i +g+++lHs gi+H D+ p+N+++de +  
  CCE30703.1 106 DLVLHEIEAYELLRrhpHPNIVEYRGCIVSDGRITgICLAKYK-VTLDERVQDSTPLNK---DLFLEGIGRGIRHLHSLGIVHNDINPDNVMLDELDRP 200
                 56788988877777777*************9999967776666.559999997555554...57999***************************9999* PP

                 EE-SGTTSEESSSSCSBCTTTSCG CS
     Pkinase 138 KitDFGlakelessskltsfvgts 161
                  i+DF+   +  ++ +     gt 
  CCE30703.1 201 IIIDFDSWGREGQKLSPGMKKGTL 224
                 *****9866666555555555555 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.3e-09   5.9e-06      50     147 ..     113     205 ..     100     226 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.3e-09
                  HHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr  50 eeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf 147
                  e ++++++  hpniv++ g++++++++  +     + +L++ ++++     t  ++  f   + +G+++L+s  +vH d+   Nv+l+e +   i Df
   CCE30703.1 113 EAYELLRRHPHPNIVEYRGCIVSDGRITGICLAKYKVTLDERVQDS-----TPLNKDLFLEGIGRGIRHLHSLGIVHNDINPDNVMLDELDRPIIIDF 205
                  567899999**************9*988888777778888888877.....44444457889**************************9888888888 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0     4e-09     1e-05     120     167 ..     163     206 ..     142     214 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4e-09
         Kdo 120 krallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 k   l+ +gr i+ lh++g+ H d+++ n++l++ +    + ++iD+d
  CCE30703.1 163 KDLFLEGIGRGIRHLHSLGIVHNDINPDNVMLDELD----RPIIIDFD 206
                 4556899****************************9....99*****9 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.3   1.1e-08   2.8e-05     157     194 ..     174     206 ..     145     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.1e-08
                 HHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 157 aallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                  ++l+   + +++H+D++p+N+++d+ d ++  +iDf+
  CCE30703.1 174 IRHLH---SLGIVHNDINPDNVMLDELDRPI--IIDFD 206
                 56777...79***************9999**..****9 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.1e-06      0.01     318     364 ..     173     213 ..     166     227 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.1e-06
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsd 364
                     g r L+   gi+H+Di  +N+++      + ++ ++iD+D    +++
      CCE30703.1 173 GIRHLH-SLGIVHNDINPDNVMLD-----ELDRPIIIDFDSWGREGQ 213
                     679999.9***************9.....678899999998766664 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.3e-06     0.019     158     198 ..     175     215 ..     164     225 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.3e-06
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtkv 198
                   +L+++g+vh+++++dn++lde  + ++ +f++  r g+k 
   CCE30703.1 175 RHLHSLGIVHNDINPDNVMLDELDRPIIIDFDSWGREGQKL 215
                  69******************************999999986 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.8e-05     0.073     105     149 ..     160     205 ..     107     208 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 105 eeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                   +++l+ e +   ++ ++  g+vH D++  Nv++de  +++iID+
  CCE30703.1 160 PLNKDLFLEGIGRGIRHLHSLGIVHNDINPDNVMLDELdRPIIIDF 205
                 4456677777888888999*****************977******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2318.94
//
Query:       CCE30704.1  [L=351]
Description: uncharacterized protein CPUR_04553 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-11   43.7   0.0    3.1e-11   43.1   0.0    1.2  1  Pkinase         Protein kinase domain
    4.6e-07   30.0   0.2      7e-07   29.4   0.2    1.2  1  APH             Phosphotransferase enzyme family
      1e-05   25.0   0.0    1.5e-05   24.4   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0005   19.5   0.1     0.0009   18.7   0.1    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.025   14.2   0.0    1.4  1  RIO1            RIO1 family
       0.11   12.0   0.4       0.22   11.1   0.1    1.6  2  Choline_kinase  Choline/ethanolamine kinase
       0.13   11.0   0.2       0.21   10.3   0.2    1.3  1  Pkinase_fungal  Fungal protein kinase
       0.16   11.3   0.0       0.24   10.7   0.0    1.2  1  Kinase-like     Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.4e-14   3.1e-11      44     144 ..     107     207 ..      94     223 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 1.4e-14
                 HHHHHHHHHHHHS...CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEE CS
     Pkinase  44 kvlrEikilkklk...hpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelK 138
                  vl+Ei+  + l+   hpniv++ +++ ++ +++ ++l   + + l++++++    ++ +   +++ i +g+++lHs gi+H Dl p+N+++de +   
  CCE30704.1 107 LVLHEIEAYELLRrhpHPNIVEYRGCVVSDGRITgICLARYKMT-LDERMKD---STPFDKDLLLEGIERGIRHLHSLGIVHNDLHPDNVMLDELDRPV 201
                 5778888777777777*************999997888877755.8888876...55556667899***************************9999** PP

                 E-SGTT CS
     Pkinase 139 itDFGl 144
                 i+DF+ 
  CCE30704.1 202 IIDFDS 207
                 ****85 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.2   3.1e-10     7e-07     147     195 ..     164     207 ..     127     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 3.1e-10
                 HHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT CS
         APH 147 eleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfed 195
                 +l  + +++  ++l+   + +++H+Dlhp+N+++d+ d +v  +iDf+ 
  CCE30704.1 164 DLLLEGIERGIRHLH---SLGIVHNDLHPDNVMLDELDRPV--IIDFDS 207
                 445557777888888...7****************999999..****95 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   6.7e-09   1.5e-05      50     147 ..     113     205 ..     105     229 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6.7e-09
                  HHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr  50 eeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf 147
                  e ++++++  hpniv++ g++++++++  +     + +L++ ++++  ++++ +    +   + +G+++L+s  +vH dl   Nv+l+e +   i Df
   CCE30704.1 113 EAYELLRRHPHPNIVEYRGCVVSDGRITGICLARYKMTLDERMKDS--TPFDKDL---LLEGIERGIRHLHSLGIVHNDLHPDNVMLDELDRPVIIDF 205
                  567899999****************998888888888999999887..5555444...456899************************9888778887 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1     4e-07    0.0009     122     167 ..     165     206 ..     148     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4e-07
         Kdo 122 allkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                  ll+ + r i+ lh++g+ H dl + n++l++ +    + ++iD+d
  CCE30704.1 165 LLLEGIERGIRHLHSLGIVHNDLHPDNVMLDELD----RPVIIDFD 206
                 568889999************************9....9******9 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.1e-05     0.025     105     149 ..     160     205 ..     105     208 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 105 eeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                   +++l+ e +e  ++ ++  g+vH DL   Nv++de  ++viID+
  CCE30704.1 160 PFDKDLLLEGIERGIRHLHSLGIVHNDLHPDNVMLDELdRPVIIDF 205
                 4467788888999999999*****************977******8 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   9.8e-05      0.22     143     171 ..     178     205 ..     145     209 .. 0.82
   2 ?   -3.3   0.0       2.5   5.6e+03     111     133 ..     310     332 ..     302     335 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.8e-05
                     G-EEEE-S--SGGGEEE.-CTTEEEE--G CS
  Choline_kinase 143 spvvfcHnDlqegNillnkeekklvlIDF 171
                     +++   HnDl + N++l +e ++ v+IDF
      CCE30704.1 178 HSLGIVHNDLHPDNVML-DELDRPVIIDF 205
                     447778***********.88888899**9 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.5
                     ECHHGGCCHCCCTHHHHHHHHHT CS
  Choline_kinase 111 kkekkkkqlklinledlekelek 133
                       ++k+k+ k++ +++++++++k
      CCE30704.1 310 PPKEKEKRCKFWAWYKIKEQVDK 332
                     55678888888888888888765 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   9.3e-05      0.21     317     363 ..     172     212 ..     162     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.3e-05
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakels 363
                     +g r L+   gi+H+D   +N+++      + ++ ++iD+D   +++
      CCE30704.1 172 RGIRHLH-SLGIVHNDLHPDNVMLD-----ELDRPVIIDFDSWGHEG 212
                     4668899.999*************9.....67889999999877766 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00011      0.24     157     197 ..     174     214 ..     162     224 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggftaLvragtk 197
                  + +L+++g+vh+++++dn++lde  + ++ +f++    g+k
   CCE30704.1 174 IRHLHSLGIVHNDLHPDNVMLDELDRPVIIDFDSWGHEGQK 214
                  579********************999888899887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2928.09
//
Query:       CCE30705.1  [L=118]
Description: uncharacterized protein CPUR_04554 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-10   41.0   0.0    1.6e-10   40.8   0.0    1.1  1  Pkinase          Protein kinase domain
    1.2e-05   25.3   0.1    1.5e-05   25.0   0.1    1.1  1  APH              Phosphotransferase enzyme family
    8.4e-05   22.0   0.0    0.00011   21.7   0.0    1.1  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0018   17.1   0.0      0.002   17.0   0.0    1.1  1  Pkinase_fungal   Fungal protein kinase
     0.0064   15.8   0.0     0.0077   15.6   0.0    1.1  1  Pkinase_Tyr      Protein tyrosine kinase
  ------ inclusion threshold ------
       0.01   15.2   0.0      0.013   14.8   0.0    1.1  1  Kinase-like      Kinase-like
      0.021   14.4   0.0      0.032   13.8   0.0    1.3  1  Choline_kinase   Choline/ethanolamine kinase
      0.047   13.3   0.0      0.065   12.8   0.0    1.2  1  RIO1             RIO1 family
      0.063   12.2   0.1      0.082   11.9   0.1    1.1  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
       0.21   11.2   0.0       0.27   10.8   0.0    1.2  1  FTA2             Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   8.7e-14   1.6e-10      95     144 ..      10      59 ..       1      81 [. 0.85

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 8.7e-14
                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTT CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGl 144
                  ++ + ++ ++ i +g+++lHs g+iH D+Kp+Ni++de +   i+DF+ 
  CCE30705.1  10 STPFDKSRCLEGIERGIRHLHSLGVIHNDIKPNNIMLDELDRPVIIDFDS 59 
                 5556677888999*************************9999******86 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   8.6e-09   1.5e-05     152     194 ..      21      58 ..       5      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 8.6e-09
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                  +++  ++l+   + +++H+D++p+N+++d+ d +v  +iDf+
  CCE30705.1  21 GIERGIRHLH---SLGVIHNDIKPNNIMLDELDRPV--IIDFD 58 
                 5666677888...79***************999999..****9 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.9e-08   0.00011     120     167 ..      15      58 ..       4      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 5.9e-08
         Kdo 120 krallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 k + l+ + r i+ lh++gv H d+ + ni+l++ +    + ++iD+d
  CCE30705.1  15 KSRCLEGIERGIRHLHSLGVIHNDIKPNNIMLDELD----RPVIIDFD 58 
                 5677889999*************************9....9******9 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.1e-06     0.002     315     363 ..      22      64 ..       7      79 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-06
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakels 363
                       +g r L+   g++H+Di  nNi++      + ++ ++iD+D    ++
      CCE30705.1  22 IERGIRHLH-SLGVIHNDIKPNNIMLD-----ELDRPVIIDFDSWGREG 64 
                     445778899.999*************9.....67889999999766655 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.3e-06    0.0077     106     147 ..      16      57 ..       2      65 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.3e-06
                  HHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr 106 lsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf 147
                   ++   + +G+++L+s  ++H d+   N++l+e +   i Df
   CCE30705.1  16 SRCLEGIERGIRHLHSLGVIHNDIKPNNIMLDELDRPVIIDF 57 
                  556667889***********************9887777777 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   7.4e-06     0.013     158     198 ..      27      67 ..      21      77 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.4e-06
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtkv 198
                   +L+++g++h++++++n++lde  + ++ +f++  r g+k 
   CCE30705.1  27 RHLHSLGVIHNDIKPNNIMLDELDRPVIIDFDSWGREGQKF 67 
                  69*******************************99999986 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.8e-05     0.032     143     171 ..      30      57 ..       3      61 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
                     G-EEEE-S--SGGGEEE.-CTTEEEE--G CS
  Choline_kinase 143 spvvfcHnDlqegNillnkeekklvlIDF 171
                     +++   HnD+ ++Ni+l +e ++ v+IDF
      CCE30705.1  30 HSLGVIHNDIKPNNIML-DELDRPVIIDF 57 
                     446778***********.88888899**9 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.6e-05     0.065     114     149 ..      21      57 ..       4      60 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 114 vleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                  +e  ++ ++  g++H D+   N+++de  ++viID+
  CCE30705.1  21 GIERGIRHLHSLGVIHNDIKPNNIMLDELdRPVIIDF 57 
                 45556677889****************977******8 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   4.6e-05     0.082     300     324 ..      34      58 ..      26      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.6e-05
  Pox_ser-thr_kin 300 flhvDlkPdniLifdskekliikvk 324
                       +h+D+kP+ni++ + ++++ii ++
       CCE30705.1  34 VIHNDIKPNNIMLDELDRPVIIDFD 58 
                      59***********999****99886 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.27     178     206 ..      19      47 ..       7      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
        FTA2 178 lpkllrdlkklhklgIvvrDlkeenyidg 206
                 l+ + r ++ lh+lg++++D+k++n++ +
  CCE30705.1  19 LEGIERGIRHLHSLGVIHNDIKPNNIMLD 47 
                 5678899*****************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1009.71
//
Query:       CCE30706.1  [L=288]
Description: uncharacterized protein CPUR_04555 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-14   53.3   0.0    3.1e-14   53.0   0.0    1.1  1  Pkinase          Protein kinase domain
    9.2e-06   25.7   0.1    1.4e-05   25.1   0.1    1.2  1  APH              Phosphotransferase enzyme family
    1.4e-05   24.5   0.0    2.2e-05   23.9   0.0    1.2  1  Pkinase_Tyr      Protein tyrosine kinase
    0.00015   21.2   0.0    0.00023   20.6   0.0    1.2  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0042   16.7   0.1     0.0064   16.1   0.1    1.2  1  RIO1             RIO1 family
  ------ inclusion threshold ------
      0.018   14.7   0.1      0.029   13.9   0.1    1.3  1  Choline_kinase   Choline/ethanolamine kinase
      0.024   13.4   0.0      0.038   12.8   0.0    1.2  1  Pkinase_fungal   Fungal protein kinase
      0.033   13.5   0.0      0.049   12.9   0.0    1.2  1  Kinase-like      Kinase-like
       0.18   10.8   0.1       0.25   10.3   0.1    1.2  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   1.6e-17   3.1e-14      45     150 ..     108     213 ..      92     269 .. 0.82

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.6e-17
                 HHHHHHHHHHHS...CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE CS
     Pkinase  45 vlrEikilkklk...hpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKi 139
                 vl+Ei+  + l+   hpniv++ +++ ++ +++ ++l   + + l+++++++  ++     ++++ i +g+++lHs gi+H DlKp+Ni++de +   i
  CCE30706.1 108 VLHEIEAYELLRrhpHPNIVEYRGCVVSDGRITgICLAKYKMT-LNERMKASIPFD---KDRYLEGIERGIRHLHSLGIVHNDLKPNNIMLDELDRPVI 202
                 678888777777767*************999997777766654.888888655555...5689*****************************9999*** PP

                 -SGTTSEESSS CS
     Pkinase 140 tDFGlakeles 150
                 +DF+   +  +
  CCE30706.1 203 IDFDSWGREGQ 213
                 ***97655555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1     7e-09   1.4e-05     153     194 ..     170     206 ..     144     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 7e-09
                 HHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 153 laalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 +++  ++l+   + +++H+Dl+p+N+++d+ d +v  +iDf+
  CCE30706.1 170 IERGIRHLH---SLGIVHNDLKPNNIMLDELDRPV--IIDFD 206
                 556667777...79***************999999..****9 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.1e-08   2.2e-05      50     147 ..     113     205 ..     105     209 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.1e-08
                  HHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr  50 eeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf 147
                  e ++++++  hpniv++ g++++++++  +     + +L++ ++++    +   d+ ++   + +G+++L+s  +vH dl   N++l+e +   i Df
   CCE30706.1 113 EAYELLRRHPHPNIVEYRGCVVSDGRITGICLAKYKMTLNERMKAS----IP-FDKDRYLEGIERGIRHLHSLGIVHNDLKPNNIMLDELDRPVIIDF 205
                  567899999*************999977666555555666666655....43.355678889**************************9887777777 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.1e-07   0.00023     121     167 ..     164     206 ..     148     214 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.1e-07
         Kdo 121 rallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                  + l+ + r i+ lh++g+ H dl + ni+l++ +    + ++iD+d
  CCE30706.1 164 DRYLEGIERGIRHLHSLGIVHNDLKPNNIMLDELD----RPVIIDFD 206
                 5678889999************************9....9******9 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.2e-06    0.0064     107     149 ..     162     205 ..     107     207 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.2e-06
                 HHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 107 aeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                 +++ y e +e  ++ ++  g+vH DL   N+++de  ++viID+
  CCE30706.1 162 DKDRYLEGIERGIRHLHSLGIVHNDLKPNNIMLDELdRPVIIDF 205
                 45667888888899999*****************977******8 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.5e-05     0.029     143     171 ..     178     205 ..     139     207 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
                     G-EEEE-S--SGGGEEE.-CTTEEEE--G CS
  Choline_kinase 143 spvvfcHnDlqegNillnkeekklvlIDF 171
                     +++   HnDl ++Ni+l +e ++ v+IDF
      CCE30706.1 178 HSLGIVHNDLKPNNIML-DELDRPVIIDF 205
                     457788***********.88888899**9 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.9e-05     0.038     318     377 ..     173     223 ..     164     227 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGT 377
                     g r L+   gi+H+D   nNi++      + ++ ++iD+D    +++   + g++ + GT
      CCE30706.1 173 GIRHLH-SLGIVHNDLKPNNIMLD-----ELDRPVIIDFDSWGREGQ---KLGPGMKQGT 223
                     678999.99**************9.....678899999998666663...3444555555 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.5e-05     0.049     158     198 ..     175     215 ..     170     225 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtkv 198
                   +L+++g+vh++++++n++lde  + ++ +f++  r g+k 
   CCE30706.1 175 RHLHSLGIVHNDLKPNNIMLDELDRPVIIDFDSWGREGQKL 215
                  69*********************999999**9999999885 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00013      0.25     300     324 ..     182     206 ..     174     209 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00013
  Pox_ser-thr_kin 300 flhvDlkPdniLifdskekliikvk 324
                       +h+DlkP+ni++ + ++++ii ++
       CCE30706.1 182 IVHNDLKPNNIMLDELDRPVIIDFD 206
                      69***********999***999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2046.09
//
Query:       CCE30707.1  [L=310]
Description: uncharacterized protein CPUR_04556 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-12   46.8   0.0    3.3e-12   46.3   0.0    1.1  1  Pkinase         Protein kinase domain
      9e-05   21.9   0.0    0.00019   20.8   0.0    1.5  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00013   21.9   1.1    0.00027   20.9   0.8    1.6  2  APH             Phosphotransferase enzyme family
    0.00027   20.4   0.1    0.00053   19.4   0.1    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0015   18.1   0.1     0.0023   17.6   0.1    1.3  1  RIO1            RIO1 family
  ------ inclusion threshold ------
      0.023   13.5   0.1      0.035   12.9   0.1    1.2  1  Pkinase_fungal  Fungal protein kinase
       0.12   12.0   0.1       0.18   11.4   0.1    1.2  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   1.3e-15   3.3e-12      43     163 ..     104     222 ..      90     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 1.3e-15
                 HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEE CS
     Pkinase  43 kkvlrEikilkklk...hpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgel 137
                 k vl+Ei++l+ l+   hpniv++ +++ ++ ++  l+l   + + l+++++   + ++ + + ++  + +g+++lHs  i+H D+ p+Ni++de +  
  CCE30707.1 104 KLVLHEIEVLELLRkhpHPNIVEYRGCVVTDGRISgLCLAKYKMT-LDERMK---VGAPFDKEIFLDGVERGIRHLHSLDIVHNDINPSNIMLDELDRP 198
                 67999****99999999*************999987777766644.666665...566777778999***************************9999* PP

                 EE-SGTTSEESSSSCSBCTTTSCGGG CS
     Pkinase 138 KitDFGlakelessskltsfvgtseY 163
                  i+DF+  ++  +  +l    gt+ +
  CCE30707.1 199 VIIDFDCWQKNGQ--ELGLKKGTPGW 222
                 *****98765444..34555556555 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   7.5e-08   0.00019      51     148 ..     112     204 ..      93     219 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 7.5e-08
                  HHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STT CS
  Pkinase_Tyr  51 eakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfG 148
                   +++++k  hpniv++ g+++ ++++  +     + +L++ ++          d+  f   v +G+++L+s ++vH d+   N++l+e +   i Df 
   CCE30707.1 112 VLELLRKHPHPNIVEYRGCVVTDGRISGLCLAKYKMTLDERMKVG-----APFDKEIFLDGVERGIRHLHSLDIVHNDINPSNIMLDELDRPVIIDFD 204
                  3456778899***********999854433333333444444443.....4445555778899************************98888888885 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.9   4.9e+03      37      59 ..     106     126 ..      97     142 .. 0.68
   2 !   20.9   0.8   1.1e-07   0.00027     160     195 ..     175     205 ..     150     208 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHTT-B--B-CT CS
         APH  37 irrevallrlLakagvpvPevla 59 
                 +  e ++l lL+k++   P ++ 
  CCE30707.1 106 VLHEIEVLELLRKHPH--PNIVE 126
                 5678999999999944..44443 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 1.1e-07
                 --SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT CS
         APH 160 lpgelptvllHgDlhpgNllvdpddgrvtGviDfed 195
                 l+   +  ++H+D++p N+++d+ d +v  +iDf++
  CCE30707.1 175 LH---SLDIVHNDINPSNIMLDELDRPV--IIDFDC 205
                 44...5669*************999999..*****8 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   2.1e-07   0.00053     124     167 ..     165     204 ..     142     212 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.1e-07
         Kdo 124 lkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 l  v r i+ lh++++ H d+++ ni+l++ +    + ++iD+d
  CCE30707.1 165 LDGVERGIRHLHSLDIVHNDINPSNIMLDELD----RPVIIDFD 204
                 5668899************************9....9******9 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1     9e-07    0.0023      52     149 ..     103     203 ..      79     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9e-07
                 HHHHHHHHHHHHHHHHTT--S--EEEEETTEEEEE--EETTEEGGBHHHCG.-.....HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.E CS
        RIO1  52 klwaekEfrnLkrleeagvpvPkpielkrhvlvmefigedgvaapklkdve.e.....eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.k 143
                    +  E++ L+ l+++  p P+ +e++  v+    i+  g+ ++k k +  e        ++e++ + +e  ++ ++   +vH D++  N+++de  +
  CCE30707.1 103 SKLVLHEIEVLELLRKH--PHPNIVEYRGCVVTDGRIS--GLCLAKYKMTLdErmkvgAPFDKEIFLDGVERGIRHLHSLDIVHNDINPSNIMLDELdR 197
                 55667899999999998..8999999999999999999..55544444333221234555689999999999999********************977* PP

                 EEE--G CS
        RIO1 144 vviIDv 149
                 +viID+
  CCE30707.1 198 PVIIDF 203
                 *****8 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.4e-05     0.035     317     359 ..     170     206 ..     161     220 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.4e-05
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDla 359
                     +g r L+    i+H+Di   Ni++      + ++ ++iD+D  
      CCE30707.1 170 RGIRHLH-SLDIVHNDINPSNIMLD-----ELDRPVIIDFDCW 206
                     4778999.999*************9.....6788899999975 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     7e-05      0.18     145     172 ..     178     204 ..     143     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7e-05
                     EEEE-S--SGGGEEE.-CTTEEEE--GT CS
  Choline_kinase 145 vvfcHnDlqegNillnkeekklvlIDFE 172
                     +   HnD+ ++Ni+l +e ++ v+IDF 
      CCE30707.1 178 LDIVHNDINPSNIML-DELDRPVIIDFD 204
                     6678***********.88888899**95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2366.16
//
Query:       CCE30708.1  [L=499]
Description: related to DNA primase large chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-85  285.2   0.0    6.5e-85  284.7   0.0    1.2  1  DNA_primase_lrg  Eukaryotic and archaeal DNA primase, large s


Domain annotation for each model (and alignments):
>> DNA_primase_lrg  Eukaryotic and archaeal DNA primase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.7   0.0   3.6e-89   6.5e-85       2     266 .]     195     480 ..     194     480 .. 0.98

  Alignments for each domain:
  == domain 1  score: 284.7 bits;  conditional E-value: 3.6e-89
                      EEEEEHHHHHHHTT-GGS-EETTEEEE-HHHHHHHHHHHHHHHHHH..........HHGGGSSS---HHHHHHHCT--................ CS
  DNA_primase_lrg   2 fykvpfedvldlvkrrrvllkkGyaylpkeeleslllekfrkrlekalestkeslpeleeeikederekleellealsesyvaed......vqe 89 
                      ++kv++e+v+dlv+ rrv+lk+G+a++p +e++s+++++f +rlek+le t+++lp+l    +ed+r  l+++l++ls+++++ d      +++
       CCE30708.1 195 WFKVDWERVPDLVEGRRVFLKQGKAFVPGREQSSMVVAEFSSRLEKQLELTARALPRL----DEDDR--LTPILNHLSKNFITPDstyvssSTA 282
                      79********************************************************....*****..*********************9999 PP

                      ...TTSSTTGGSHHHHTT--HHHHCCHHHHCCCSS--CHHHHHHHHHHHHCT--CHHHHCCCHCHST...HHHHHHHTHCHCHHHCC-STT--- CS
  DNA_primase_lrg  90 eedskisaknidklakesfPpCmrelleglkknghlkhegrlqltlFlkdiglsldeilelwkeaftr.teekFdkeyrynirhnyGkegkrtn 182
                       ++++i+a+nid+l+ ++fP Cm +l+++l+++ hlkh+grlq+tlFlk+igl+l+e+l +w+++f + t+++F+keyryn+rh+yG++g++ n
       CCE30708.1 283 PDGAQITASNIDHLS-QHFPACMSHLHRSLRRDAHLKHYGRLQYTLFLKGIGLNLEECLMFWRSSFHKvTDDQFNKEYRYNVRHAYGEVGGDSN 375
                      9**************.9***************************************************************************** PP

                      .....-----HHHHHHS....TT---S-HHHH..HHHHHHHHHHTT...HHHHHHHHHHHHTT.HHHHHHHHHHHHHS..............-T CS
  DNA_primase_lrg 183 .....yspysCekiltkpppgkgdahgCpfrh.dpdklktlLqeyg.lseediedilesvkegeyqvaCtkvFelthk..............ce 255
                           yspysC+kilt+ ppg g+ahgCp+rh + ++l++l + +g ++++ ++ + e+ +++++++aC++vFe +hk              ++
       CCE30708.1 376 rrgggYSPYSCQKILTEHPPGPGEAHGCPYRHfNMENLTALVNAMGvSDRAVLQGVKEDKEKQKFHMACNRVFEHVHKaeirkakdesvmtsSQ 469
                      **************************************99999***9999999*************************************9999 PP

                      TT-SSCHHHCC CS
  DNA_primase_lrg 256 rdeikhPlqYy 266
                       ++i hP++Y+
       CCE30708.1 470 LETIVHPNEYF 480
                      99********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3616.35
//
Query:       CCE30709.1  [L=99]
Description: uncharacterized protein CPUR_04558 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0013   18.5   1.9        0.1   12.5   0.1    3.0  3  zf-FPG_IleRS    Zinc finger found in FPG and IleRS
  ------ inclusion threshold ------
      0.013   15.6   0.3      0.016   15.3   0.3    1.1  1  Mut7-C          Mut7-C RNAse domain
       0.12   12.9   2.7        2.9    8.5   0.1    2.3  2  DUF1660         Prophage protein (DUF1660)
        1.1    9.2   5.6        3.9    7.5   0.9    2.2  2  Carla_C4        Carlavirus putative nucleic acid binding prot
        2.1    8.3   9.9        3.4    7.7   0.3    2.6  3  Zn_ribbon_SprT  SprT-like zinc ribbon domain
        4.2    7.7   8.0        9.1    6.6   0.4    3.0  3  zinc_ribbon_9   zinc-ribbon


Domain annotation for each model (and alignments):
>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.1   3.1e+02      17      28 ..      22      33 ..      16      35 .. 0.84
   2 ?    2.8   0.1     0.038   1.1e+02       4       8 ..      59      63 ..      57      71 .. 0.68
   3 !   12.5   0.1   3.4e-05       0.1      15      29 ..      83      94 ..      77      94 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.1
                  TTEEEEE-TTTT CS
  zf-FPG_IleRS 17 agrstyfCprCq 28
                  +g+st   p C+
    CCE30709.1 22 SGHSTATSPSCY 33
                  799**99****8 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.038
                  -TTT- CS
  zf-FPG_IleRS  4 CpRCw 8 
                  C RC 
    CCE30709.1 59 CMRCA 63
                  55554 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 3.4e-05
                  ECTTEEEEE-TTTT. CS
  zf-FPG_IleRS 15 gqagrstyfCprCqk 29
                      ++ y+C+rC+k
    CCE30709.1 83 A---HNLYYCERCAK 94
                  4...59*******96 PP

>> Mut7-C  Mut7-C RNAse domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.3   5.4e-06     0.016      89     132 ..      55      95 ..      37      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.4e-06
      Mut7-C  89 elsrCvaCngeleevekeevkervpekvyeeadeftrCekCrkv 132
                 e+ rC++C   +e ++ ++v    +  + + a++++ Ce+C k+
  CCE30709.1  55 EILRCMRCARSVEATSTDDV---SSTGMVRIAHNLYYCERCAKM 95 
                 578*****************...77899999999*******986 PP

>> DUF1660  Prophage protein (DUF1660)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00096       2.9      14      31 ..      48      66 ..      32      79 .. 0.73
   2 ?    4.8   0.6     0.013        39      18      29 ..      83      93 ..      75      99 .] 0.71

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00096
     DUF1660 14 enpaadseelyCeRC.eiv 31
                + p+a++e+l C RC   v
  CCE30709.1 48 PRPVASVEILRCMRCaRSV 66
                579999*********3333 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.013
     DUF1660 18 adseelyCeRCe 29
                a+  + yCeRC 
  CCE30709.1 83 AHNLY-YCERCA 93
                45555.9****3 PP

>> Carla_C4  Carlavirus putative nucleic acid binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.9    0.0013       3.9      51      63 ..      54      66 ..      46      74 .. 0.84
   2 ?    4.4   0.2     0.012        37      42      62 ..      75      95 ..      67      97 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0013
    Carla_C4 51 rsigRCeRCyRvy 63
                 +i RC RC+R +
  CCE30709.1 54 VEILRCMRCARSV 66
                589*******965 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.012
    Carla_C4 42 skYarrRRArsigRCeRCyRv 62
                s+ +  R A+++  CeRC+++
  CCE30709.1 75 SSTGMVRIAHNLYYCERCAKM 95
                55566789999*******986 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.6   4.8e+03      15      20 ..      11      16 ..       9      18 .. 0.61
   2 ?    7.7   0.3    0.0011       3.4       8      31 ..      30      63 ..      30      70 .. 0.83
   3 ?    5.4   6.1    0.0057        17       6      35 ..      58      97 ..      58      99 .] 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
  Zn_ribbon_SprT 15 thhlsi 20
                    +h++s+
      CCE30709.1 11 PHRSSS 16
                    566665 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0011
  Zn_ribbon_SprT  8 tgCgreythhlsirrhn...........YrCrrCk 31
                    ++C++  +h++s + ++            rC rC+
      CCE30709.1 30 PSCYSG-HHRFSMDAAAapprpvasveiLRCMRCA 63
                    689965.5666669999***********9999997 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0057
  Zn_ribbon_SprT  6 rCtgCgreythhlsirrhn..........YrCrrCkgtLr 35
                    rC +C r ++++++ +  +          Y+C rC+ + +
      CCE30709.1 58 RCMRCARSVEATSTDDVSStgmvriahnlYYCERCAKMVG 97
                    7999999999999999999999999999*******98765 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.37   1.1e+03      17      30 ..      22      35 ..      13      36 .. 0.68
   2 ?    6.6   0.4     0.003       9.1       5      19 ..      59      73 ..      59      77 .. 0.79
   3 ?    4.2   0.4     0.018        54       2      12 ..      86      96 ..      85      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.37
  zinc_ribbon_9 17 dedsdvlCPhCggg 30
                   + +s ++ P+C +g
     CCE30709.1 22 SGHSTATSPSCYSG 35
                   45555667999776 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.003
  zinc_ribbon_9  5 ChqCdrfVsvspded 19
                   C +C+r+V++++++d
     CCE30709.1 59 CMRCARSVEATSTDD 73
                   889******976544 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.018
  zinc_ribbon_9  2 syWChqCdrfV 12
                    y+C +C+++V
     CCE30709.1 86 LYYCERCAKMV 96
                   7*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.45
# Mc/sec: 660.58
//
Query:       CCE30710.1  [L=299]
Description: uncharacterized protein CPUR_04559 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   16.1   0.0      0.028   14.6   0.0    1.7  1  TetR_C_30  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_30  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.6e-06     0.028      32      66 ..     140     174 ..     128     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.6e-06
   TetR_C_30  32 pdeelrellaeeydpvarrfiaalrralPdlpeee 66 
                  ++++r+l +  y+p+ +r+++ l+ra+Pdlp + 
  CCE30710.1 140 VSARGRRLWDSVYAPLEERLLEKLARAHPDLPVHI 174
                 57899**************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2325.37
//
Query:       CCE30711.1  [L=1078]
Description: related to nonribosomal peptide synthetase MxcG (component of the myxochelin iron transport regulon) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-27   94.4   0.0    1.4e-26   93.3   0.0    1.6  1  NAD_binding_4  Male sterility protein
    9.2e-25   87.1   0.0    8.8e-24   83.9   0.0    2.0  1  AMP-binding    AMP-binding enzyme
    2.6e-15   56.5   0.0    4.7e-15   55.7   0.0    1.4  1  Epimerase      NAD dependent epimerase/dehydratase family
    3.6e-08   33.6   0.0    6.9e-08   32.7   0.0    1.5  1  PP-binding     Phosphopantetheine attachment site
    0.00012   21.7   0.0     0.0002   20.9   0.0    1.3  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
      0.001   19.0   0.0     0.0038   17.2   0.0    2.1  2  KR             KR domain
     0.0019   17.3   0.0      0.037   13.1   0.0    2.7  2  RmlD_sub_bind  RmlD substrate binding domain
  ------ inclusion threshold ------
      0.059   13.9   0.7       0.16   12.5   0.2    2.0  2  DUF1674        Protein of unknown function (DUF1674)


Domain annotation for each model (and alignments):
>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0     6e-30   1.4e-26       1     257 []     704     941 ..     704     941 .. 0.89

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 6e-30
                    EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHH.HHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE- CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpev.kiyllvRaksgesaee.RleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihs 94 
                    +TG TG LG+++l+ L ++ + v  +++l R ++g + ++ R+     + +l  ++      ++++++ D+s+ +lG+ +e+++ l e++d iih+
     CCE30711.1 704 VTGTTGSLGAYMLHFLCESPN-VkSVIALNRGQDGGASRQpRI---NSERGLTTDF-----AKVTFLSCDISKHDLGIGAEAYNYLLETCDRIIHN 790
                    7**************999975.77*******988854444266...4568888888.....5********************************** PP

                    -SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE..GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHH CS
  NAD_binding_4  95 aAtvnfdepykellrvNveGtrevlelakklkklkvllhvST..ayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvr 188
                    a  vnf+ ++++ +++ ++G+r ++++a++ +k+ +l++vS+  ++   +r +e                e+++ + +    +Y  sKa++  ++ 
     CCE30711.1 791 AWPVNFNLDVST-FEPYIRGVRTLVDFAHAAQKQVPLIFVSSigSVGGWTRPEE-------------PIPEKQLPDPNLAIMGYGLSKAAGSLILD 872
                    **********97.5789************999999*******955555555533.............366788888888889************** PP

                    HHHHHH---EEEEEE-EEE-.-SSST---TTSHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHHH CS
  NAD_binding_4 189 earrrsglpvvivRpsiitg.esktGwingsdlgirgllgliakgvlpeilgdkeavldlvpvDyvanai 257
                    +a+ +sg+  + vR++ i g + ++G  n ++++++++ +++ +g+lp  lg    v+d++pv+ va+ +
     CCE30711.1 873 AAAAHSGVVGASVRVGQIAGpRGEKGRWNPQEFLPSMIASSVHMGILPVDLGVL-DVVDWIPVEDVARSM 941
                    ********************88899***********************999987.79*********9976 PP

>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   3.9e-27   8.8e-24       9     421 ..      31     436 ..      23     438 .. 0.76

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 3.9e-27
                  TTSEEEEE......CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-E.....EEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTE CS
  AMP-binding   9 pdkvalvd......sgegqtlTYreldervnrlAagLrslGvkkgdr.....VaillpnspewvvallailkaGavvvplnptltaeelayiledsea 95 
                  p+++ + +      ++++  ++++el ++vn +A+ +    vk++++      + + +n ++  ++ la+ kaG+ +  ++p+ t+e  + +++d+++
   CCE30711.1  31 PQRPYILQprsadaKDGWAPISFGELANAVNYVAHLIAT-TVKPESKdefptLVYMGHNDVRIGIVTLAAIKAGCQAFFISPRNTPEMQRSLFQDTNS 127
                  56665555666666779******************9986.788888777997888889**************************************** PP

                  SEEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHH......HHH CS
  AMP-binding  96 kvliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnl......van 187
                  k +   + +   ++++ + +     + +++ +  +++ e+   e+++ + k+     + +    d+++++ TSG+TG+P  ++++++ +       a 
   CCE30711.1 128 KHIW--YAESFSSAVQTWIE----GQDMTCWQVPPPE-EWLRAETTPFPYKK-----TYQEARFDPLVVLHTSGSTGTPRPIIVRQGGMaiadeyRA- 212
                  ****..55555444444444....4556777755544.43444444444332.....335689***********************88854333211. PP

                  HHHHH.........HHHCSCCTT.....T-EEEESS-TTSCHH.HHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH. CS
  AMP-binding 188 vaslk.........letrfklke.....ddvvlsilplahifg.lilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle. 269
                                +               ++ls +p +h+ g l+ +l ++++   ++ l+ +  +l+++l +e++ + ++     +P++le + + 
   CCE30711.1 213 ----TlqpfcggeyFG------TyweehATRMLSLMPGFHAGGvLVNFLTAPIYFRVSIALPFPGRPLTAELAIECLVHSGADAALMPPSILEEMSKr 300
                  ....123332222222......13345599*************545678889999999999998888889999**********************887 PP

                  CCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE.CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEE CS
  AMP-binding 270 sgalkaakkakdlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtv.lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGe 366
                  +g  +       l++l +v +gg+ ls+++ +++  ++ + ++++ G TE ++ + +   +++++++   +     g+e+ + Dee++ +        
   CCE30711.1 301 DGGVD------ALKRLNFVTFGGGNLSQDVGDRLVGHGVT-LVNVIGSTESSTTALYfQSDPKSWQYFV-INAEQMGAEWVLHDEEENIYQ------- 383
                  88888......999***********************886.**************77544455555553.66777799**9*999965554....... PP

                  EEEEETTS-SEBTT-HHHHHHHEEE..TCCEEEEEEEEEEE..TTSEEEEEEECCCEEE CS
  AMP-binding 367 llvrgpgvmkgYlkkpeataeafds..egrwlrTGDlgrld..edGyleivgRkkdlik 421
                  l++r +        ++ + ++ f +  +     TGDl + +  ++G+  + gR++d+i+
   CCE30711.1 384 LVMRRKDA------HDPLDQQCFYTfpKATEWDTGDLYKPHptREGNWMYQGRADDVIV 436
                  77776643......334445555544332246899999965225899999999999997 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   2.1e-18   4.7e-15       1     223 [.     702     942 ..     702     948 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 2.1e-18
                 EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHC............EEEE--TT-HH......HHHHHHHHHT-SEEEE--S---HHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledl............elveldltdrs......alerlfkeeqpdavihlAavggvaa 79 
                 ilVtG tG +G+++++ l e   ++ vi+l+r ++++++ + +              ++  +d+ +++      a + l++   +d +ih      +++
  CCE30711.1 702 ILVTGTTGSLGAYMLHFLCESPnVKsVIALNRGQDGGASRQPRINserglttdfakvTFLSCDISKHDlgigaeAYNYLLE--TCDRIIHN----AWPV 794
                 8*******************999666*******988887766655999*********999999999998877755555555..8******9....89** PP

                 HHHSHHHHHHHHTHHHHHHHHHHHHHTCT.EEEEEEE.GGGGTSCSS.SSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEEST CS
   Epimerase  80 ssedpadfieknlqgtlnlleaarkagvk.rllflsS.sevYGkdae.qpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGp 175
                 +++    ++e  ++g+++l++ a++a+ +  l+f+sS  +v G   +  p  e+ l +p      Y+++K+ag  ++ a+aa  g+   ++r+  + Gp
  CCE30711.1 795 NFNLDVSTFEPYIRGVRTLVDFAHAAQKQvPLIFVSSiGSVGGWTRPeEPIPEKQLPDPNLAIMGYGLSKAAGSLILDAAAAHSGVVGASVRVGQIAGP 893
                 ************************997777*******555556555533655555555667889*********************************** PP

                 T..S-TTSTTSHHHHHHHHHHTTSSSEEEET.TST-EEEEEEHHHHHHHHH CS
   Epimerase 176 r..ngegevsrvipalirkilegkqevtllg.dgtalRdflyveDvaeail 223
                 r  +g  +++ ++p +i++  +    ++ ++     + d++ veDva+ +l
  CCE30711.1 894 RgeKGRWNPQEFLPSMIASSVHMG--ILPVDlGVLDVVDWIPVEDVARSML 942
                 *9888888*********9877755..333332557789*********9887 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   3.1e-11   6.9e-08       2      67 .]     575     646 ..     574     646 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 3.1e-11
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeef...gv.....eiplsdlfehptlaelaayl 67 
                  l++l+ + +++++ +   ++d+f+ G+DSl++++l++ l++ f   gv     +i ++ ++ +pt+++la++l
  CCE30711.1 575 SLLSLLVDKMEISHID--THQDFFSAGMDSLQVLTLTRLLKAGFeaaGVhvspaAIAPRAVYSNPTPRQLAKHL 646
                 5788889999998755..9*************************55555888889999999**********997 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     9e-08    0.0002       1     236 [.     703     944 ..     703     964 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 9e-08
                    EEETTTSHHHHHHHHHHHHC.T-CCEEEEEEESS-TTHHHHHCTTT...TTGC.CEEEEE--TT-HHH......HHHHHHHHT-SEEEE--S---H CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlek.gyevhgivrrsssfntgriehlakdpkeelee.nlklhkgDltDsss......lerllaevqpdevynLAAqshV 88 
                    L+TG +G  G+y++++L+e  + + ++  +r +   ++r  ++ +++   ++  ++++ ++D++ ++        + ll+   +d++++ A     
     CCE30711.1 703 LVTGTTGSLGAYMLHFLCESpNVKSVIALNRGQDGGASRQPRINSERGLTTDFaKVTFLSCDISKHDLgigaeaYNYLLE--TCDRIIHNA----W 792
                    9*****************98445555556677777777777777665544332499999999987654111110333443..47*****66....5 PP

                    HHHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-S..SSSB-TTS----...-SHHHHHHHHHHHHHHHHHHHH---EEEEE CS
  GDP_Man_Dehyd  89 dvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvq..evpqtEttpfyP...rsPYaaaKlyadwivvnyreayglfavngi 179
                    +v f+    t+e  + G+ +L++ + a++  k+v ++++S+    G  +  e p+ E++  +P      Y+ +K++   i  +     g+   + +
     CCE30711.1 793 PVNFNLDVSTFEPYIRGVRTLVDFAHAAQ--KQVPLIFVSSIGSVGGWTrpEEPIPEKQLPDPnlaIMGYGLSKAAGSLILDAAAAHSGVVGASVR 886
                    6778888899***************9876..6788888888766665533699*****88888332578*************************** PP

                    E-EEESTTS-TT...SCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHH CS
  GDP_Man_Dehyd 180 lfnhesprrget...fvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlm 236
                    +    +pr  e+    +++ ++ ++a   +     + lG ld + dw  v+D+++ m  +
     CCE30711.1 887 VGQIAGPRG-EKgrwNPQEFLPSMIASSVHMGILPVDLGVLD-VVDWIPVEDVARSMLDI 944
                    *******95.5423357788888888765555556789*998.88**********99765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.2   9.5e+03       5      34 ..     313     342 ..     312     355 .. 0.81
   2 !   17.2   0.0   1.7e-06    0.0038       2      66 ..     701     769 ..     700     839 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.2
                 EETTTSHHHHHHHHHHHHHHS-EEEEE-SS CS
          KR   5 itGGlGgLGlelarwlaekgarhlvllsRs 34 
                 +t G G+L + + + l+ +g + + +++ +
  CCE30711.1 313 VTFGGGNLSQDVGDRLVGHGVTLVNVIGST 342
                 5668899************99988888876 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.7e-06
                 EEEEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHH...HHHHHHHTT-EEEE----TT-HH CS
          KR   2 tylitGGlGgLGlelarwlaekg.arhlvllsRsaaadedska...liaelealgaevevvaaDvsdkd 66 
                 t l+tG +G+LG  + ++l+e+   ++++ l R +   ++ +      + l+   a+v+++++D+s++d
  CCE30711.1 701 TILVTGTTGSLGAYMLHFLCESPnVKSVIALNRGQDGGASRQPrinSERGLTTDFAKVTFLSCDISKHD 769
                 679******************98789999999997444444431115567778888**********976 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.11   2.5e+02       2      32 ..     701     733 ..     700     756 .. 0.78
   2 !   13.1   0.0   1.6e-05     0.037     185     235 ..     933     985 ..     807    1006 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.11
                    EEEEESTTSHHHHHHHHHCTT..TSEEEEEE-T CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlae..eglevlaltr 32 
                    +ilvtG +G lG  + + l e  +  +v+al+r
     CCE30711.1 701 TILVTGTTGSLGAYMLHFLCEspNVKSVIALNR 733
                    69**********999987765222335666666 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.6e-05
                    EHHHHHHHHHHHHH..HCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCHTT CS
  RmlD_sub_bind 185 sardlAevllqlle..kaaeekelagvyHlanegetswlefArailkeagads 235
                     ++d+A+ +l+++   ++++  +++g++Hl+n  ++ w ++A ai + ++++ 
     CCE30711.1 933 PVEDVARSMLDIAGitQMKALDDISGYFHLVNPHQARWEDMAVAIQDVYRESI 985
                    5899*****999761144444555*********************99988765 PP

>> DUF1674  Protein of unknown function (DUF1674)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   7.2e-05      0.16      32      49 ..     416     433 ..     389     433 .. 0.87
   2 ?   -3.4   0.0       6.5   1.5e+04      44      50 .]     749     755 ..     748     755 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.2e-05
     DUF1674  32 gpEPtRygDWeykGrvsD 49 
                 +p PtR+g W y Gr+ D
  CCE30711.1 416 KPHPTREGNWMYQGRADD 433
                 789************977 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.5
     DUF1674  44 kGrvsDF 50 
                 +G+++DF
  CCE30711.1 749 RGLTTDF 755
                 7*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1078 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 7347.76
//
Query:       CCE30712.1  [L=364]
Description: uncharacterized protein CPUR_04561 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-22   80.2   0.2    6.7e-14   51.8   0.1    2.1  2  FBPase    Fructose-1-6-bisphosphatase, N-terminal domain
  ------ inclusion threshold ------
       0.31   10.6   6.5       0.47   10.0   6.5    1.2  1  SR-25     Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> FBPase  Fructose-1-6-bisphosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   4.3e-10   3.9e-06      17      91 ..      16      90 ..       5     103 .. 0.76
   2 !   51.8   0.1   7.4e-18   6.7e-14      97     167 ..     123     187 ..      96     194 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 4.3e-10
      FBPase 17 atgelta.llsalklalkiisskvrkaelvnllGlag.aeNvtGdeqkklDvladeiliealkaseevkvlvSEEee 91
                +++ lt+ ++ al  ++  is+++r+    ++  + g + N +Gd q ++Dvla++il++al a  +v+++ SEE++
  CCE30712.1 16 THQSLTTsVIPALLGSIARISTALRHRH--HISPTDGnTLNAFGDAQLNVDVLAEKILRDALAACPAVCTASSEEDP 90
                5555543255666677777777777666..4544443156***********************************86 PP

  == domain 2  score: 51.8 bits;  conditional E-value: 7.4e-18
      FBPase  97 erekegkyvvafDPlDGSSnidtnvsvGtifsiyrkksedeettidvlqpGkeqvAAgyvvYGsstmlVlt 167
                   +++++y+vafDPlDGSS+i  n +vGti++i++  s+          p  +q+A  + vYG++t+  ++
  CCE30712.1 123 SASSSTSYTVAFDPLDGSSIIGPNWTVGTIIGIWH--STTAL----SQDPSTKQIASLLGVYGPRTTAFVA 187
                 4567899****************************..33333....446999*************997665 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.5   5.3e-05      0.47      45      81 ..      96     129 ..      73     137 .. 0.40

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 5.3e-05
       SR-25  45 sekeeerskekkkkkrrrsssssssssssssssssss 81 
                  ++ +e++++++ k ++    + ssssssss sss+s
  CCE30712.1  96 HDAPTENETSHQSKVSQ---ETPSSSSSSSSASSSTS 129
                 33332222222222222...22222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2517.25
//
Query:       CCE30713.1  [L=363]
Description: uncharacterized protein CPUR_04562 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2554.66
//
Query:       CCE30714.1  [L=524]
Description: uncharacterized protein CPUR_04563 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-18   64.5  37.9    1.1e-17   64.0  37.9    1.2  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0  37.9   6.1e-22   1.1e-17      12     439 ..      88     502 ..      76     503 .. 0.78

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 6.1e-22
  Transp_cyt_pur  12 lnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvviaivwfgvqa 105
                      +l+ +W +an+++n+++ + lg la+ L++ ++ ++ ++g+++g   +a +++ G++ G +++++ R+  G + s +  ll +v+ i++ ++  
      CCE30714.1  88 IQLAIMWYSANISLNNLAAAMLGpLAYQLGFLDCAMCAVFGAFVGSLTTAYMSIWGPQSGNRTMVVLRFFMGYWPSKILCLLNIVLMIGYATIDG 182
                     6899********************************************************************999988888889*********** PP

  Transp_cyt_pur 106 wiGsealllmlgkifgkwleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaegGpvldkavklgks 200
                     +iG+++l+ + +  +   + i g +l + ++ +v++f+  v ++++ + + ++  ++f    +l+++a   f+  a +k +g  ++ +   l+  
      CCE30714.1 183 IIGGQVLSAVSDGKM---TIIVGIVLVSVVCWVVAVFGMAVFHKYERYSWLPQTIVLF----ILIGSAGAFFDASAPSKNTGALLAAQR--LS-- 266
                     ****99988776554...45555888889999999*****************987777....466777767788899998885555544..44.. PP

  Transp_cyt_pur 201 elflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspld.......ilakfdet..agvll 286
                            + +l ++ +++  a+DF +y ++k+s+ ki+l+++ +l ++++++ ++ + +++ + +++aw++ +       i+a + ++  +g + 
      CCE30714.1 267 -----FFNICLYVPNSWAGAASDFYVYYPEKTSKRKIFLLTLIGLWVSFSFVYLIAIGLGTGVANSPAWAAANdissgalIVAGYEPLkgFGRFC 356
                     .....23577777888888888*****************************99999999999999999987622222222555555555444443 PP

  Transp_cyt_pur 287 ililvalaqlgvnisanllsagldlaallP..kkinikrgsliaavialvivpwkllssssklftaflsllavflspvagviiadyfvvrrgylk 379
                        +v + ++  n   +++sa+l ++ l    k +++ + s+++ +i l+ +++     +   f +f+ l+++    ++ +++ + +  r ++  
      CCE30714.1 357 --SVVVSLGVIANSIPSTYSAALGVQVLGRygKAVPRYVWSTVIVLIELILAVAGREHLFVI-FQNFCALMGYWAMIMVFIVLLEHLLFRGRQGF 448
                     ..444556667788888888888888887666888888888888888888888843333333.66777776665555555555566655555543 PP

  Transp_cyt_pur 380 laalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsylv 439
                             +  +Y       ++a+ a+i+G + +++g+a + +  +++ +++++d++ ++
      CCE30714.1 449 DWSRW---EDKDYQ---PLGLAALGAFIIGWVGAILGMAQAWYTGPLATLASGGDVGLWI 502
                     33333...466676...6778899999999999999999899999998888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3697.82
//
Query:       CCE30715.1  [L=409]
Description: related to integral membrane protein PTH11 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        6.5    6.8   7.3          4    7.5   0.3    3.2  4  DUF5316   Family of unknown function (DUF5316)


Domain annotation for each model (and alignments):
>> DUF5316  Family of unknown function (DUF5316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1    0.0095   1.7e+02      53      69 ..      43      59 ..      35      61 .. 0.86
   2 ?   -2.6   0.0      0.31   5.6e+03      13      28 ..     110     125 ..      99     133 .. 0.61
   3 ?   -2.6   0.1      0.32   5.7e+03      64      68 ..     143     147 ..     118     152 .. 0.52
   4 ?    7.5   0.3   0.00023         4      46      70 ..     206     230 ..     201     235 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.0095
     DUF5316 53 knllliglPNllaalll 69
                 +l+l++l N++++++ 
  CCE30715.1 43 DYLMLFALVNFTGVVIS 59
                5899*********9986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.31
     DUF5316  13 glvfiliagllsGafv 28 
                 +  +il a l+ G++ 
  CCE30715.1 110 ACLLILYARLTRGTLA 125
                 3345666777777665 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.32
     DUF5316  64 laall 68 
                 ++++l
  CCE30715.1 143 VVVIL 147
                 23333 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.00023
     DUF5316  46 rkrfklsknllliglPNllaallly 70 
                 rkr+ + +++l +g++N+laa+l+ 
  CCE30715.1 206 RKRKIILIFILGLGIFNILAAILNR 230
                 6788888889999*********974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2863.52
//
Query:       CCE30716.1  [L=160]
Description: related to decapping enzyme [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-30  103.4   0.0    5.8e-30  103.0   0.0    1.1  1  NTP_transf_9  Domain of unknown function (DUF427)


Domain annotation for each model (and alignments):
>> NTP_transf_9  Domain of unknown function (DUF427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   3.3e-34   5.8e-30       2      92 ..      26     116 ..      25     117 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 3.3e-34
                   EEE-SS-EEEEES--EEEEETTS--EEEB-GGGB-GGGEEEEEEEEEETTTEEEEEEEEEETTE.EEEEEEEEESS--TT-GGGTT-BEE-T CS
  NTP_transf_9   2 rvklngtvvaetddavvveetglppryYfppedvklellkpsdtttvCpwKGeasyyslavdgk.evkdaaWsYpeptpeaaeikgyvaFya 92 
                   ++k++g v+a+t++ ++ +et++pp+yY+p++++++  l p++++t+C++KG a+yy+++ +++   +++aWsY++ptp++++i+gyv+Fya
    CCE30716.1  26 QIKYHGDVIADTKEGFWALETHHPPTYYLPRSSIRIP-LIPTRKHTMCEFKGLATYYKIELAEDiSSSNRAWSYERPTPAFEAIRGYVSFYA 116
                   8999*******************************88.59**999**************9966659*************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1156.99
//
Query:       CCE30717.1  [L=229]
Description: probable translation elongation factor eEF-1,gamma chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-10   40.5   0.0    4.7e-10   39.7   0.0    1.4  1  GST_N     Glutathione S-transferase, N-terminal domain
    1.1e-07   32.2   0.0    1.9e-06   28.2   0.0    2.2  2  GST_N_3   Glutathione S-transferase, N-terminal domain
    4.9e-07   29.9   0.0      1e-06   28.8   0.0    1.4  1  GST_C     Glutathione S-transferase, C-terminal domain
    4.4e-06   26.8   0.0    7.4e-06   26.1   0.0    1.3  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    7.4e-06   25.9   0.0    1.4e-05   25.0   0.0    1.5  1  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.3e-13   4.7e-10       2      75 ..       2      76 ..       1      77 [. 0.89

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.3e-13
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTT..S-SSEEEETTEEEESHHHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnpl..gkvPaLedngkkltESraIleYia 75
                 + ly++ ++pr+ ++r+++aa g+++e v++ +      +  l++++pl  gk PaLe++g kltE+  I+ Y+a
  CCE30717.1  2 AFVLYGYAENPRTRVARIVAAAQGIPVELVKVIPRRD-IGRHLLIDKFPLsnGKTPALETPGIKLTETISIALYLA 76
                5679*************************99886222.23489********************************8 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   5.3e-10   1.9e-06       1      68 [.       5      76 ..       5      82 .. 0.89
   2 ?    1.5   0.0      0.11     4e+02      57      73 ..     138     154 ..     110     156 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5.3e-10
                EES-TTSHHHHHHHHHHHHHT--EEEE---TTTT..HHHHHHH-..TT--SSEEETTS-EEESHHHHHHHHH CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevtpgeh..deellakn..plgkvPvLeddgealtdSlaIidyLe 68
                Lyg+   p +r++r++    g+pve+v+v p +   +  l  k    +gk P+Le++g +lt++ +I+ yL 
  CCE30717.1  5 LYGYAENPRTRVARIVAAAQGIPVELVKVIPRRDigRHLLIDKFplSNGKTPALETPGIKLTETISIALYLA 76
                8999999***********************999865555556657889**********************96 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
                 EESHHHHHHHHHHHH-G CS
     GST_N_3  57 ltdSlaIidyLeelypg 73 
                   dSla++d Le+l ++
  CCE30717.1 138 KADSLAMLDVLEDLMNN 154
                 579*********98665 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.9e-10     1e-06      18      90 ..     128     201 ..     114     203 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.9e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT.TTTSHHHHHHHHHHH CS
       GST_C  18 ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafg.qekfpnlkawlerim 90 
                  ++++  +  +    ++l++le  + ++++lvG+++t+AD+ ++ +l ++ + +l+   ++ +pn  +++e + 
  CCE30717.1 128 PQNKPQIERGKADSLAMLDVLEDLMNNKTHLVGNEMTIADVFVAIVLARALEWVLDSAwRKRHPNCMKHFEMVT 201
                 55666677777888899***********************************99999999*********99886 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.1e-09   7.4e-06      32      88 ..     144     202 ..     128     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.1e-09
                 HHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH....TCCCC-HHHHHHHHHHHT CS
     GST_C_3  32 flkyfekvlkkkgggylvgdklTyADlalfqvldgleea....ealkkfpklkalyervea 88 
                 +l+++e ++   ++++lvg+++T+AD+++  vl    e+    ++ k++p+++++ e v a
  CCE30717.1 144 MLDVLEDLMN--NKTHLVGNEMTIADVFVAIVLARALEWvldsAWRKRHPNCMKHFEMVTA 202
                 5777888877..899************99999999999988544449********999976 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0     4e-09   1.4e-05       3      67 ..     133     197 ..     131     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4e-09
                 HHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHH CS
     GST_C_2   3 averaleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdireaypnlraWl 67 
                  +er ++   a+ld+le+++  ++ l G++ t+aD+++a +l r+     +  +r+++pn+ +++
  CCE30717.1 133 QIERGKADSLAMLDVLEDLMNNKTHLVGNEMTIADVFVAIVLARALEWVLDSAWRKRHPNCMKHF 197
                 5788888899***********************************7777789********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1640.05
//
Query:       CCE30718.1  [L=422]
Description: uncharacterized protein CPUR_04567 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-25   87.9   0.3    6.5e-15   55.5   0.1    2.2  2  Ank_2     Ankyrin repeats (3 copies)
    1.5e-15   55.7   0.2    0.00023   21.4   0.0    3.5  3  Ank_3     Ankyrin repeat
    2.3e-14   53.6   1.0    8.4e-09   35.8   0.2    2.7  3  Ank_4     Ankyrin repeats (many copies)
    1.4e-13   50.6   0.3    1.7e-06   28.2   0.1    3.5  3  Ank       Ankyrin repeat
    1.9e-11   44.0   2.2    8.2e-09   35.6   0.2    2.3  3  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   3.7e-13   1.3e-09      24      83 .]     322     389 ..     305     389 .. 0.86
   2 !   55.5   0.1   1.8e-18   6.5e-15       1      80 [.     330     419 ..     330     421 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 3.7e-13
       Ank_2  24 k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 +  +g ++L+ Aa++gnl i+++++ +      ++++g+t+Lh+Aa +gh+ +v++L+  g ++n++d
  CCE30718.1 322 SqaQGISPLFQAAMAGNLTILSFMVHNsvypesVNQEGQTILHVAAGNGHYYAVEFLIGFGLNVNARD 389
                 14699********************757788888899*********************5599999887 PP

  == domain 2  score: 55.5 bits;  conditional E-value: 1.8e-18
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadin 80 
                 L++Aa+ gnl ++ +++ +++ p+  + +g+t+Lh+Aa ng+  +v++L+ +       d  g+t+Lh+A+ +g +++vklL++ gad++
  CCE30718.1 330 LFQAAMAGNLTILSFMVhNSVYPEsvNqEGQTILHVAAGNGHYYAVEFLIGFglnvnaRDTMGNTALHLAIANGWEQVVKLLVDAGADVD 419
                 789*****99999999977766665525**********************977665544488************99*******99**985 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00015      0.54       2      23 ..     326     347 ..     325     354 .. 0.89
   2 !   19.6   0.0   2.4e-07   0.00087       1      31 []     358     387 ..     358     387 .. 0.92
   3 !   21.4   0.0   6.4e-08   0.00023       2      30 ..     392     419 ..     391     420 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 G +pL++Aa++gnl+i+ f++ 
  CCE30718.1 326 GISPLFQAAMAGNLTILSFMVH 347
                 89**************999886 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 2.4e-07
       Ank_3   1 nGetpLhlAarsgnl.eivkfLlenkgadvna 31 
                 +G+t+Lh+Aa +g++ + v+fL+  +g +vna
  CCE30718.1 358 EGQTILHVAAGNGHYyA-VEFLIG-FGLNVNA 387
                 69*************55.******.9***996 PP

  == domain 3  score: 21.4 bits;  conditional E-value: 6.4e-08
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+t+LhlA+ +g   +vk+L++  gadv+
  CCE30718.1 392 GNTALHLAIANGWEQVVKLLVD-AGADVD 419
                 9*********************.9***97 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0033        12      32      54 ..     323     345 ..     319     346 .. 0.85
   2 !   24.4   0.0     9e-09   3.2e-05       3      55 .]     328     379 ..     326     379 .. 0.96
   3 !   35.8   0.2   2.3e-12   8.4e-09       3      55 .]     361     412 ..     359     412 .. 0.97

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0033
       Ank_4  32 nrsGetalhiAakrgnveilklL 54 
                  ++G ++l  Aa+ gn+ il + 
  CCE30718.1 323 QAQGISPLFQAAMAGNLTILSFM 345
                 57899***********9999985 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 9e-09
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++L++aa++g+l ++ + + + + +  + n +G+t lh Aa +g++ ++++L+
  CCE30718.1 328 SPLFQAAMAGNLTILSFMVHNSVYPESV-NQEGQTILHVAAGNGHYYAVEFLI 379
                 79*****************999999999.***********************8 PP

  == domain 3  score: 35.8 bits;  conditional E-value: 2.3e-12
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+Lh aa  g++ +v++L+ +g ++na+ +  G+talh A+ +g  +++klL+
  CCE30718.1 361 TILHVAAGNGHYYAVEFLIGFGLNVNAR-DTMGNTALHLAIANGWEQVVKLLV 412
                 79**************************.999*******************96 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.12   4.3e+02       2      23 ..     326     347 ..     325     356 .. 0.84
   2 !   16.7   0.0   2.1e-06    0.0074       2      31 ..     359     389 ..     358     390 .. 0.93
   3 !   28.2   0.1   4.6e-10   1.7e-06       1      28 [.     391     419 ..     391     422 .] 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.12
                 SBBHHHHHHHHTTHHHHHHHHT CS
         Ank   2 GnTPLHlAatngkkriiklLLh 23 
                 G +PL  Aa+ g++ i+++ +h
  CCE30718.1 326 GISPLFQAAMAGNLTILSFMVH 347
                 899*********9999998885 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.1e-06
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G T LH+Aa ng+   +++L+  G n+na+d
  CCE30718.1 359 GQTILHVAAGNGHYYAVEFLIgFGLNVNARD 389
                 99*******************7789****99 PP

  == domain 3  score: 28.2 bits;  conditional E-value: 4.6e-10
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnln 28 
                 +GnT+LHlA+ ng ++++klL+  GA+++
  CCE30718.1 391 MGNTALHLAIANGWEQVVKLLVdAGADVD 419
                 6*********8888********66***86 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.1   3.9e+03      18      36 ..     328     346 ..     321     356 .. 0.76
   2 !   35.6   0.2   2.3e-12   8.2e-09      11      56 .]     354     399 ..     345     399 .. 0.93
   3 !   16.1   0.1   2.9e-06      0.01       6      43 ..     382     419 ..     380     422 .] 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.1
       Ank_5  18 tpLhvAakygaadvvrlLl 36 
                 +pL +Aa +g+++++ +++
  CCE30718.1 328 SPLFQAAMAGNLTILSFMV 346
                 6888999999999988877 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 2.3e-12
       Ank_5  11 rldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                   +++g+t+LhvAa +g+   v++L+ +g++ n++d +G+tal+lA
  CCE30718.1 354 SVNQEGQTILHVAAGNGHYYAVEFLIGFGLNVNARDTMGNTALHLA 399
                 5688999*************************************98 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 2.9e-06
       Ank_5   6 padvnrldgggntpLhvAakygaadvvrlLlargadln 43 
                   +vn++d  gnt+Lh+A+ +g  +vv+lL++ gad +
  CCE30718.1 382 GLNVNARDTMGNTALHLAIANGWEQVVKLLVDAGADVD 419
                 489*******************9999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3201.55
//
Query:       CCE30719.1  [L=206]
Description: probable class E vacuolar-protein sorting and endocytosis factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-06   27.5  20.8      3e-06   26.9  20.8    1.3  1  Snf7      Snf7
     0.0019   18.2   7.5     0.0033   17.4   7.5    1.5  1  Ist1      Regulator of Vps4 activity in the MVB pathway
  ------ inclusion threshold ------
        6.8    7.4  21.7       0.28   11.8  14.4    2.3  2  Com_YlbF  Control of competence regulator ComK, YlbF/YmcA


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9  20.8     5e-10     3e-06      14     167 ..      24     179 ..      10     187 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 5e-10
                 HHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHH CS
        Snf7  14 dkkqeslekkikkleaelkklakkgnkdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkamnkkvdidkidklmde 112
                  ++ ++  k+   l++++++l kkg+ ++a + +K +     + +q+d++    e  + +i+  ++++++   m q+ k+m  ++k+ ++ k   +++ 
  CCE30719.1  24 RREAQKAAKQDPILKKQIQELLKKGETQKAYQKAKMLLSKQALASQMDQVADMAELSAAQIQANNAMNRMTHMMAQSSKVMSVAQKNASPAKSLGVLET 122
                 567777777777889************************999999*9999999999999**************************************** PP

                 HHHHHHHHTCHHHHHHHHHTT-..GGTTHHHHHHHHHHHHHHHHHCSH.HHHHHHHT CS
        Snf7 113 iedqmekaeeisEalsrsldda..deedEeeleaeLdaLeqelgdeelldesvklpe 167
                 +++q+e++++++ + ++++     +++ E+ + + L +L+++ g+e  ++ ++  p+
  CCE30719.1 123 FKEQNEEYSMTNAIYQDAFSQStsAQVPEDAVHELLGKLADDAGIELKAQLNQATPA 179
                 *******************988999*******************9996655555555 PP

>> Ist1  Regulator of Vps4 activity in the MVB pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   7.5   5.5e-07    0.0033      15     105 ..      27     117 ..      13     168 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.5e-07
                 HHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT--SSSSSHHHHHHHHHHHHHH-TTTTTH CS
        Ist1  15 qkkkealakqarrdiaqlLengkeekArirveqliredillelleilelycelllarlsllekqkeldeelkEAvssliyAaprvselkEL 105
                  +k +++  + +++i +lL++g+++kA+ +++ l++ ++l + ++++  + el  a+++  ++++++++ + ++ + +  A+++ s  k L
  CCE30719.1  27 AQKAAKQDPILKKQIQELLKKGETQKAYQKAKMLLSKQALASQMDQVADMAELSAAQIQANNAMNRMTHMMAQSSKVMSVAQKNASPAKSL 117
                 345555666789***********************************************99999998888877766666666666555555 PP

>> Com_YlbF  Control of competence regulator ComK, YlbF/YmcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  14.4   4.7e-05      0.28      21     102 ..      24      99 ..      15     100 .. 0.85
   2 ?   -0.8   0.3      0.39   2.4e+03      39      55 ..     121     137 ..     107     175 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTT----HHHHH.HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Com_YlbF  21 ykeaeealeedeelqklikefkklqkelqekqmkgeelkeeekk.elqelkeeldknplvkeyleaeqelnellqevnkiiae 102
                  +ea++a ++d+ l+k+i+e+ k+ +     q   ++++++++    q+l +++d+  +++e+ +a+ + n+ +++++ ++a+
  CCE30719.1  24 RREAQKAAKQDPILKKQIQELLKKGE----TQ---KAYQKAKMLlSKQALASQMDQVADMAELSAAQIQANNAMNRMTHMMAQ 99 
                 589******************99888....22...34555555447789*****************************99986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.39
                 HHHHHHHHHHHHHHHTT CS
    Com_YlbF  39 kefkklqkelqekqmkg 55 
                 + fk++++e+++    +
  CCE30719.1 121 ETFKEQNEEYSMTNAIY 137
                 55666666665533333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2934  (0.163645); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1534.28
//
Query:       CCE30720.1  [L=1277]
Description: probable SKI2-antiviral protein and putative helicase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-50  170.3   0.4    6.4e-50  169.0   0.4    1.7  1  DSHCT           DSHCT (NUC185) domain
    3.9e-41  140.0   0.0    1.4e-40  138.3   0.0    1.9  2  Ski2_N          Ski2 N-terminal region
    2.3e-29  103.2   1.1    3.8e-29  102.4   1.1    1.4  1  rRNA_proc-arch  rRNA-processing arch domain
    5.3e-19   68.6   0.1    9.4e-18   64.6   0.0    2.8  3  DEAD            DEAD/DEAH box helicase
      2e-06   28.1   0.0    8.9e-06   26.0   0.0    2.2  1  Helicase_C      Helicase conserved C-terminal domain
    2.1e-05   24.6   0.1    0.00011   22.2   0.0    2.1  2  ResIII          Type III restriction enzyme, res subunit
     0.0099   15.5   1.3      0.016   14.8   0.2    1.8  2  Cut8            Cut8, nuclear proteasome tether protein
  ------ inclusion threshold ------
      0.054   12.4   0.1      0.099   11.6   0.1    1.3  1  TRAPPC-Trs85    ER-Golgi trafficking TRAPP I complex 85 kDa s


Domain annotation for each model (and alignments):
>> DSHCT  DSHCT (NUC185) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.4   2.9e-53   6.4e-50       3     162 ..    1101    1270 ..    1099    1273 .. 0.93

  Alignments for each domain:
  == domain 1  score: 169.0 bits;  conditional E-value: 2.9e-53
       DSHCT    3 tvtlkGrvaaeirsedeLlltellfsgvlddlepeelaAllsalvfeekredeeekepklseeleealeelkeiaeriakvs..............v 85  
                  +++lkG+va+e++s+deL+ltel++++vl ++ep+e+aAllsa+vf+ek+    ++ p+l+++le+  +++  i e++++v+              +
  CCE30720.1 1101 RIQLKGKVACEVHSGDELVLTELILDNVLAEFEPAEIAALLSAFVFQEKTL---VE-PTLTGNLERGRDTIIAISEKVNDVQtrlqviqsaddsndF 1193
                  689*********************************************953...33.8899999999988888888888888888888899999998 PP

       DSHCT   86 esrldlglvevvyaWakgasfaellektdldeGdiVRllrrleellrqlakaakvigneeLkkkaeeaielikRdiV 162 
                   s++++gl+evvy+Wa+g+sf++++  td+ eG+iVR+++rl+e++r++++aa+++g++eL+ k++ea+elikRdi 
  CCE30720.1 1194 ASKPRFGLMEVVYEWARGMSFKNITGLTDILEGTIVRTITRLDEVCREVKNAARIVGDPELYTKMQEAQELIKRDIT 1270
                  9989***********************************************************************95 PP

>> Ski2_N  Ski2 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.0   6.1e-44   1.4e-40       1     134 [.      53     198 ..      53     199 .. 0.90
   2 ?   -2.3   0.0       1.6   3.7e+03      97     127 ..    1186    1216 ..    1171    1218 .. 0.72

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 6.1e-44
      Ski2_N   1 dklqthwdrkkdyksllkippsasrtslefkRkgleGkivgykevslveasnataknSlSlsRkpgpksdfvrGsssnlpFaPGGleeevlk.dse... 95 
                 ++lq++wd ++dy+sl+ki p+++rt ++f+R+gleG+++gyk+v + + ++atak+S+Sl Rkp+++ dfvrG ++++pFaPGGl++ +++   e   
  CCE30720.1  53 NRLQQRWDFETDYTSLFKIAPPQTRTVTRFIRHGLEGRVTGYKNV-TLPLNSATAKTSTSLLRKPANRVDFVRGAAGFFPFAPGGLDSIEATaALEdqi 150
                 579******************************************.9****************************************866663222468 PP

      Ski2_N  96 ........kaseseekllhr.dekglltippGfsrGldfkedeeeeee 134
                          +++s  +++++ +e+gll+i+pG+srG+df++++++ e+
  CCE30720.1 151 haggapenGTKASRLDRVIEvGEGGLLQIAPGMSRGIDFSKKKSTVEQ 198
                 8999999877777788887769*******************9998775 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
      Ski2_N   97 aseseekllhrdekglltippGfsrGldfke 127 
                  + ++++++  + + gl ++   + rG++fk+
  CCE30720.1 1186 SADDSNDFASKPRFGLMEVVYEWARGMSFKN 1216
                  3334455666779999***********9986 PP

>> rRNA_proc-arch  rRNA-processing arch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   1.1   1.7e-32   3.8e-29       1     269 [.     809    1073 ..     809    1074 .. 0.83

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 1.7e-32
                      HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTC--TT....HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHGGG--TTEEEEEEETTTEEE CS
  rRNA_proc-arch    1 EyMlerSFsqfqnqkslpelekklkeleeelksitied....eedieeyyklrqqleelreeirkiltkpknilpfLqpGRlvrvksnddldf 89  
                      E+M++rSFs++++q+ lpe+ek +k ++++l++++ e       +++e++++ q++++ + e++k l++ + + +++   Rlv+++  ++ + 
      CCE30720.1  809 EEMIKRSFSEHATQQLLPEHEKDVKVAQADLAKVKREAckvcDVAMDECHQAAQDYKQFTFELYKGLLRIPIGRNMFVEQRLVVFN-YEGVR- 899 
                      9********************************997756677558****************************************9.55444. PP

                      EEEEEEEEEE-SSST.TB---TCTTEEEEEEEEEEETTS-GGG--TT--S--TT--B.......-TT..S-EEE.EEEEEEGGGEEEEEEEEE CS
  rRNA_proc-arch   90 gwGivlnfkkrnknskeeeasdeesyvVdvllvlsenskrkdedgekseesaeelkP.......kagdrekgev.evvpvplkcieaiSsvrl 174 
                       +G  ln +++++ s e            vl  ++ +s r+     ++++ + ++ P       k ++++k+ + + + vpl+++e+++++++
      CCE30720.1  900 TVGLMLNQRTNPRFSLE----------EPVLRICAIKSTRDG----RDGTDQLPFIPatrkylhKLPQNKKHIHtKNLFVPLSDVECLTKWVV 978 
                      5******9633322222..........289999999987743....44567788888888888645567889888****************** PP

                      ---SS..TTSTTHHHHHHHHHHHHHH.......HSS---B--TTTTS----HHHHHHHHHHHHHHHHHHTSGG.GSSSHHHHHHHHHHHHHHH CS
  rRNA_proc-arch  175 klpkd..lrkseareevakavqelkr.......rfpgiplldpikdmkikdeefkkllkkiealesrlaknpllhspnleelyalyekkvalq 258 
                      k   +      +  e+++kav++l+        r      ld     k+k+ +++++++k+++  ++++++p +++pn+ +++a++++++ ++
      CCE30720.1  979 KGTLPeiF---KGGEAAQKAVEQLQDicsswdgR---WDELDL---SKVKSLALQEIMEKRKQSIKMVTESPSFKCPNFLKHFAMCHDEWLIK 1062
                      96555434...45555555555555544455544...666666...89********************************************* PP

                      HHHHHHHHHHH CS
  rRNA_proc-arch  259 eeikelkkeis 269 
                      e+i++lk+++s
      CCE30720.1 1063 EHISQLKQSLS 1073
                      ********998 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.27     6e+02      45      83 ..      33      72 ..      20      97 .. 0.76
   2 !   64.6   0.0   4.2e-21   9.4e-18       3     171 ..     309     454 ..     307     458 .. 0.87
   3 ?   -3.3   0.0       2.9   6.5e+03      84     130 ..     989    1026 ..     981    1038 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.27
                STS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEET CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
        DEAD 45 ktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliig 83
                k++  a +++P+re   + ln+l+++ ++ +d++ l  i 
  CCE30720.1 33 KRQLEAKYLTPSREFSTEWLNRLQQRWDFeTDYTSLFKIA 72
                56667889*****************998656665555554 PP

  == domain 2  score: 64.6 bits;  conditional E-value: 4.2e-21
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdiv 101
                  Q+ea+ ++ +g++v+vaa+T +GKT ++  ++  +      k+ +ka++ +P ++L +q ++++++ +++++     ++g+v+ + + s       ++
  CCE30720.1 309 FQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALA-----AKHMTKAIYTSPIKALSNQKFRDFRQTFDEVG----ILTGDVQINPEAS-------CL 391
                 69***************************9999933.....488889***********************644....4566666655555.......55 PP

                 EEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 102 vgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpk 171
                 ++t++ l ++l +g   +++v+f+++DE++ + d +++  +++++  l       +++  +i+lSAT+p+
  CCE30720.1 392 IMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDYERGVVWEEVIIML-------PAHVSLILLSATVPN 454
                 99999****998888779******************************.......55667********94 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.9
                  TSSHHHHHHHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   84 gvaardqlskldngvdivvgtpgrlddllstgklnlsqvrflVlDEa 130 
                  g+aa++ +++l    di  +  gr+d+      l+ls+v+ l l E+
  CCE30720.1  989 GEAAQKAVEQL---QDICSSWDGRWDE------LDLSKVKSLALQEI 1026
                  55555555555...5566666666665......66788877777776 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     4e-09   8.9e-06      20     111 .]     645     751 ..     597     751 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4e-09
                 EEEESSHHHHHH.......HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.......SS..HHHHHH CS
  Helicase_C  20 lifvntidrlek.......vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.......rn..vtsyiq 102
                 +i+ ++i rl+        +  l+e  +  +av+hg l    +e +   f +  ++vL at   ++G+++p  ++V+  ++        rn  + +y q
  CCE30720.1 645 MIIEKSIARLKPedrslpqIVRLRELLSRGIAVHHGGLLPIVKELVEILFAETLVKVLFATETFAMGLNLPTRTVVF-SGYRkhdghsfRNllPGEYTQ 742
                 555566666655544443322333444889999**************************************665555.5555455555566667***** PP

                 HHTTSSSTT CS
  Helicase_C 103 riGRtgRag 111
                 ++GR+gR g
  CCE30720.1 743 MAGRAGRRG 751
                 *******75 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   5.1e-08   0.00011       7     170 ..     309     453 ..     299     454 .. 0.82
   2 ?   -0.9   0.0      0.65   1.5e+03     136     147 ..     852     863 ..     805     878 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.1e-08
                 HHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-S CS
      ResIII   7 yQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkk 105
                  Q+ea+  l+      +   +++++ T +GKT+va  +i+  +k+    k++   p k+l +q  ++f+++++e      ++++gd +++      +++
  CCE30720.1 309 FQKEAVYHLE------NGDSVFVAAHTSAGKTVVAEYAIALAAKH--MTKAIYTSPIKALSNQKFRDFRQTFDEV-----GILTGDVQIN-----PEAS 389
                 4555555553......5567889999*********6666666664..459**********************975.....8999999999.....8999 PP

                 EEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T...TTHHHHHT---.SEEEEEESS-S CS
      ResIII 106 ilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk...swreilekfke.avllglTATpe 170
                  l++t++ l + +     ++   l    +++i+DE+H +++ +    w+e++ ++++   l+ l+AT +
  CCE30720.1 390 CLIMTTEILRSML-----YRGADLIRDVEFVIFDEVHYVNDYErgvVWEEVIIMLPAhVSLILLSATVP 453
                 9999999999999.....77888888888************86788****8777755377888999975 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.65
                 EEEETGGGTTS. CS
      ResIII 136 iiiDEaHrlgak 147
                 + +DE+H ++++
  CCE30720.1 852 VAMDECHQAAQD 863
                 669****99884 PP

>> Cut8  Cut8, nuclear proteasome tether protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   3.1e+03     154     180 ..     937     961 ..     933     969 .. 0.77
   2 !   14.8   0.2   7.2e-06     0.016     125     164 ..    1061    1102 ..    1060    1105 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.4
        Cut8 154 sLkfldeatklvhkLPnfdnqshnyyk 180
                 +L f+    k++hkLP+  n++h ++k
  CCE30720.1 937 QLPFIPATRKYLHKLPQ--NKKHIHTK 961
                 68899999999*****6..55555555 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 7.2e-06
        Cut8  125 vkphLleFlncLsDfilnflppnetn..lstsLkfldeatkl 164 
                  +k+h++++++ LsD+ l++lp  e+   + + L+f+d at +
  CCE30720.1 1061 IKEHISQLKQSLSDQNLQLLPDYEQRiqVLKELEFIDSATRI 1102
                  79********************9986668899*******987 PP

>> TRAPPC-Trs85  ER-Golgi trafficking TRAPP I complex 85 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.4e-05     0.099       7      69 ..    1023    1081 ..    1018    1115 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.4e-05
  TRAPPC-Trs85    7 lrkllqefsnlqsslpnspkwlnpdvlryyvllhDeseeeeskaeallekikktlgle.calLp 69  
                    l++++++ +++ +   +sp + +p++l++++++hDe       +++ ++++k++l+++   lLp
    CCE30720.1 1023 LQEIMEKRKQSIKMVTESPSFKCPNFLKHFAMCHDEWL-----IKEHISQLKQSLSDQnLQLLP 1081
                    556666666666667777******************99.....9999********999788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.88u 0.26s 00:00:01.14 Elapsed: 00:00:00.43
# Mc/sec: 8914.32
//
Query:       CCE30721.1  [L=384]
Description: probable pyruvate dehydrogenase (lipoamide) beta chain precursor (PDB1) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-43  149.1   0.0    1.4e-43  148.7   0.0    1.2  1  Transket_pyr     Transketolase, pyrimidine binding domain
    8.3e-37  125.8   0.1    2.7e-36  124.2   0.0    1.9  3  Transketolase_C  Transketolase, C-terminal domain


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7   0.0   1.5e-47   1.4e-43       2     176 ..      57     232 ..      56     234 .. 0.98

  Alignments for each domain:
  == domain 1  score: 148.7 bits;  conditional E-value: 1.5e-47
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTH..HHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGG..HHGGHH CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDva..ggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangA..qiyadq 94 
                   + ++r+a++ealae+l+++p+v+++g++va  +g ++v+kgll+ +ge+rvid++i+E++++g a+Gaal+g l +++e++  +Fa++A  qi++++
    CCE30721.1  57 EYTVREALNEALAEELEANPKVFVLGEEVAqyNGAYKVTKGLLDRFGEKRVIDTPITESGFCGLAIGAALSG-LHPVCEFMTWNFAMQAidQIVNSA 152
                   5689**************************99****************************************.9*********************** PP

                   HHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  95 airsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                    ++ ++++g +++++++r p g+     +++s+   a++ ++pglkvv P +++++k+l+++air  d++Pv++++++  + 
    CCE30721.1 153 GKTLYMSGGIQPCNITFRGPNGFAAGVGAQHSQDYSAWYGSVPGLKVVSPWSAEDAKGLMKAAIR--DPNPVIVLENELMYG 232
                   *****************************************************************..99*******988775 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.71   6.4e+03      78      98 ..      62      78 ..      54      91 .. 0.53
   2 ?   -3.5   0.0         1   9.3e+03      51      70 ..     142     161 ..     137     167 .. 0.50
   3 !  124.2   0.0     3e-40   2.7e-36       1     122 [.     251     372 ..     251     374 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.71
                     HHHHHHHHHCCCTTCSSEEEE CS
  Transketolase_C 78 sevaaalaeeafdgldapvkr 98
                     +++++alae    +l+a  k 
       CCE30721.1 62 EALNEALAE----ELEANPKV 78
                     444444444....55555444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1
                      HHHHHHHHHHHSEEEEEEEE CS
  Transketolase_C  51 ketilesvkktgrlvvveea 70 
                       + i+++v++ g+ + +  +
       CCE30721.1 142 MQAIDQIVNSAGKTLYMSGG 161
                      45555555555555544444 PP

  == domain 3  score: 124.2 bits;  conditional E-value: 3e-40
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTT.TTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLeke.gisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdgld 93 
                      gka+++r+gkd+t+v+ ++ v ++l Aae+L+k+ gi+aeV++lr+vkplD eti +svkktg+l+ ve + +  G+g+e++a+ +e afd+l+
       CCE30721.1 251 GKAKVERSGKDLTIVTLSRCVGQSLTAAENLKKNyGIEAEVINLRSVKPLDIETIVASVKKTGHLLSVESGFPHYGVGAEILALTMEYAFDYLH 344
                      89******************************************************************************************** PP

                      SEEEEEEE-SSSSSSGHHHHHHHTT-SHH CS
  Transketolase_C  94 apvkrvggpdviepgsaeelekafgldae 122
                      ap +rv+g dv++p++ + le++  ++ +
       CCE30721.1 345 APAQRVTGADVPTPYA-QGLEEMSFPTEK 372
                      ****************.77***9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2747.30
//
Query:       CCE30722.1  [L=426]
Description: uncharacterized protein CPUR_04571 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-24   85.6   0.2    5.2e-24   85.1   0.2    1.2  1  FAD_binding_3   FAD binding domain
    6.7e-07   28.8   0.1     0.0031   16.8   0.0    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00031   20.9   0.1     0.0031   17.7   0.1    2.5  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0004   20.1   0.1     0.0027   17.4   0.1    2.1  2  DAO             FAD dependent oxidoreductase
     0.0019   18.7   0.0     0.0046   17.5   0.0    1.7  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0034   17.0   0.1     0.0065   16.1   0.1    1.6  1  ApbA            Ketopantoate reductase PanE/ApbA
  ------ inclusion threshold ------
       0.11   12.6   0.0        0.4   10.8   0.0    2.0  1  Lactococcin     Lactococcin-like family
       0.12   11.6   0.0       0.22   10.8   0.0    1.4  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
       0.12   11.2   3.1        4.2    6.1   0.4    2.4  2  Trp_halogenase  Tryptophan halogenase
       0.15   10.5   0.0       0.22   10.0   0.0    1.1  1  DUF859          Siphovirus protein of unknown function (DUF85


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.2   2.9e-27   5.2e-24       3     344 ..       8     358 ..       6     361 .. 0.84

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 2.9e-27
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC...CEEEEEHHCHHC CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdt...pkaradleless 95 
                    ++lI GaG aG +la  L++ G +v+++e++s+    ++   +  + +e ++ +G+ + ++++ + ++++ ++  n  + +   p+ ++  + ++ 
     CCE30722.1   8 KILIAGAGIAGPSLAFWLQRLGHSVTIIERWSSLRTGGQQLDIRGQGIEAIERMGIIQDVRQHVVDEAGVDIVDHNG-ESIiffPRYETGSK-HQA 101
                    689******************************************************************99999999.55578888888888.999 PP

                    ST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEEE CS
  FAD_binding_3  96 pervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvl 191
                     ++ + +   +l  iL+++ ++  +  +f+  v+++e+ +  v+ ++ d +     t +++ lvGaDG +S++r++l  +  g e+   +++ +v 
     CCE30722.1 102 ISSEYEIMRGDLCHILYDR-TKDKVVYKFGLSVQGFEDKGHAVSVTLSDGS-----TADCDLLVGADGQNSRIRRALNKDAGGDEQF--IQSTGVF 189
                    99999999**********9.899999********************99994.....89**********************9999988..5666665 PP

                    EEC.-SCCCTTC...CEEEEECCTTEE...............EEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEE CS
  FAD_binding_3 192 fda.dlsdivep...lvlilsaesrgv...............mviPlentlerfyvqvearaekeersekfteeevkarlreivgektldveieev 268
                         +++  e+    +   ++ +r +               ++ P  +    + +   ++++++ ++++ft+   +a +++ +   ++    +++
     CCE30722.1 190 TCYySIKRQTEDknrATCCFETGQRCLmtrwhtphlgqvylmTMAPGHQ----AEMKEALTKDVAAQKDAFTDMFRTAGYKQTSRLLDAMKTTDDF 281
                    5555566555666884444555555543444444446666655555555....3355556666677778888888888888888888888888999 PP

                    EEEEEEEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-.GGGGHHHHHHHHHHHHH CS
  FAD_binding_3 269 sawtvaqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAk.eelLdtYeeerravaqa 344
                     a +v + + + ++kgrv l GDAa + + + G+G   a+  a+ La  +     G+ + e+ L  Y++  ++   +
     CCE30722.1 282 YANEVVHVLNNAWSKGRVVLLGDAAFCPSSMSGKGTSAAMVGAYVLAGEISRCSGGDCDvEAALARYSATLHPYIDQ 358
                    999999999*********************************************99987366899999998887766 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.7e-06    0.0031     140     207 ..       4      72 ..       2      90 .. 0.78
   2 !    9.7   0.0   0.00024      0.44     193     241 ..     120     168 ..     115     180 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.7e-06
                  S-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHHHHHHHHTTEEEEESCEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 140 llpkrivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaaleealekeGvevklgtsvk 207
                  ++p +i++ G+G  G  lA  l +lg+ vt++e+ + l   + + +++ +  ea+e++G+   +++ v+
   CCE30722.1   4 QKPLKILIAGAGIAGPSLAFWLQRLGHSVTIIERWSSLRtGGQQLDIRGQGIEAIERMGIIQDVRQHVV 72 
                  567889999999999999999999999999999999998766677788888899999999888887773 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00024
                  HHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 193 lekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpst 241
                  ++k++v  k+g sv+ ++++g+ ++v+l+dg++ d+dl+v a G   + 
   CCE30722.1 120 RTKDKVVYKFGLSVQGFEDKGHAVSVTLSDGSTADCDLLVGADGQNSRI 168
                  678999***************9999*****************9987665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   1.7e-06    0.0031       1      39 [.      11      51 ..      11      68 .. 0.81
   2 ?   -0.6   0.0      0.88   1.6e+03      44      68 .]     391     415 ..     375     415 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.7e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS..SSGGG-EEC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr..lGGraasye 39
                   I GaG++G ++A  L++ g++v+++e+ ++  +GG+  +++
     CCE30722.1 11 IAGAGIAGPSLAFWLQRLGHSVTIIERWSSlrTGGQQLDIR 51
                   67************************955423777766655 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.88
                    EECTS---EEETTHHHHCHHHHCCC CS
  NAD_binding_8  44 rvdygahifhgsgyypnvrrllrel 68 
                     v    ++f+ +++++ v+ +++el
     CCE30722.1 391 NVPKLIQWFTAPDKDEWVMPWYQEL 415
                    5566689****99999999999987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.5e-06    0.0027       1      31 [.       8      40 ..       8      47 .. 0.87
   2 ?    0.5   0.0       0.2   3.6e+02     148     234 ..     113     202 ..      75     312 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.5e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdi 31
                +++i G+Gi+G s A++L+r g  Vt++e+ + 
  CCE30722.1  8 KILIAGAGIAGPSLAFWLQRLGhsVTIIERWSS 40
                599***************88899******9755 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEE.EEEEEEEE--GGGHH..HHHTT.CTT....T.SEEEEEEEEEEEEEECCTHS CS
         DAO 148 ltaalaraaealGveilegtevtgleeedgkvwgverttp.gen.daadavVnaaGawsd..llgll.kel....d.lpispvrgqvlvlkplsekl 234
                 l++ l+++ +++ v   +g  v+g+e++ g ++ v  t + g++ d+ d +V a G  s+      l k+     + ++ ++v  +++ +k+ +e  
  CCE30722.1 113 LCHILYDRTKDK-VVYKFGLSVQGFEDK-GHAVSV--TLSdGSTaDC-DLLVGADGQNSRirR--ALnKDAggdeQfIQSTGVFTCYYSIKRQTEDK 202
                 555555555444.777777778888554.333333..4444776333.558888887776432..23332233222233355666666665555533 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.6e-06    0.0046       1      42 [.       8      50 ..       8      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.6e-06
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHH CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeea 42
                k+++ G+G  g  lA  l++lg++Vt++er + l+  +   ++
  CCE30722.1  8 KILIAGAGIAGPSLAFWLQRLGHSVTIIERWSSLRtGGQQLDI 50
                699***************************9999975544444 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.6e-06    0.0065       1      52 [.       9      58 ..       9      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.6e-06
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETT.CEEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseg.geeil 52
                i+i+GaG  G  la  L++ g+ vt+i r+    +l++ G +l+++g g e +
  CCE30722.1  9 ILIAGAGIAGPSLAFWLQRLGHSVTIIERWS---SLRTGGQQLDIRGqGIEAI 58
                89****************************9...7888888888877655555 PP

>> Lactococcin  Lactococcin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00023       0.4      19      37 ..     176     194 ..     171     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
  Lactococcin  19 nGGkLtyvqskgaldwykd 37 
                   GG  +++qs+g+++ y+ 
   CCE30722.1 176 AGGDEQFIQSTGVFTCYYS 194
                  69***************96 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.22      27      61 ..       5      39 ..       1      77 [. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
                 ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C 27 epakvlviGgGvaGlqAiatakglgakVtvlDvrp 61
                 +p k+l+ G+G+aG + +   ++lg +Vt+++  +
   CCE30722.1  5 KPLKILIAGAGIAGPSLAFWLQRLGHSVTIIERWS 39
                 6889**************************99755 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.005       8.9       1      33 [.       8      37 ..       8      44 .. 0.92
   2 ?    6.1   0.4    0.0023       4.2     181     315 ..     136     295 ..      88     328 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.005
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlves 33
                    ki+i+G+G+aG   A  l++ +   ++vt++e 
      CCE30722.1  8 KILIAGAGIAGPSLAFWLQRLG---HSVTIIER 37
                    79*******************9...89999995 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0023
                     E-TTS-EEEEEETTS-EEE-SEEEE-SGGG-IIIIIIT-......--EEE-TTT----EEEEEEEE--H---SSEEEEE-SSEEEEEEEETTEEE CS
  Trp_halogenase 181 ldedgrveslrledgreveadlfiDcsGfrgllieqaLk......tgfedwsdvLltdrAlavqveseelvepytrataekaGWtWkiPLqhrlg 269
                      +++g+  s++l+dg + + dl + + G ++++  +aL+      ++f + + v+ +  ++  q+e ++ +++      ++ G +  +   h+ +
      CCE30722.1 136 FEDKGHAVSVTLSDGSTADCDLLVGADGQNSRI-RRALNkdaggdEQFIQSTGVFTCYYSIKRQTEDKNRATC-----CFETGQRCLMTRWHTPH 224
                     46689999********************99986.455651111112344444444444444444444443332.....34555544444445555 PP

                     EEEEE-TTTS..-HHHHHHHHHHHCT--TTTS-EEEE---EE........................ES-SEE CS
  Trp_halogenase 270 nGyvyssaha..dddeAlaellaeldgkleaeprkirfttGr........................rkqawv 315
                      G vy   +a   ++e  ++l++++ ++++a  ++ r t+G+                         ++aw+
      CCE30722.1 225 LGQVYLMTMApgHQAEMKEALTKDVAAQKDAFTDMFR-TAGYkqtsrlldamkttddfyanevvhvLNNAWS 295
                     5666666666333333444555555555554444443.4444455555555555555555555555555555 PP

>> DUF859  Siphovirus protein of unknown function (DUF859)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00012      0.22     472     576 ..     183     296 ..     172     306 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
      DUF859 472 iqqyqltdnngklktsldna...nilyevgqiylsasagnPslGflfhysengkntdgnkeaiqtflsnkgrlflrhhr......wskiiddwepWkef 561
                 iq   +++   ++k++ ++    +   e+gq +l++  ++P lG+++  ++   + +++kea+ + ++ +   f  ++r       s+ +d+ +   +f
  CCE30722.1 183 IQSTGVFTCYYSIKRQTEDKnraTCCFETGQRCLMTRWHTPHLGQVYLMTMAPGHQAEMKEALTKDVAAQKDAFTDMFRtagykqTSRLLDAMKTTDDF 281
                 555555555556666665543337889*************************************99998888875555422222268999999999999 PP

      DUF859 562 arndstvlintgwns 576
                   n+++++ n  w +
  CCE30722.1 282 YANEVVHVLNNAWSK 296
                 999999999999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3092.49
//
Query:       CCE30723.1  [L=515]
Description: related to class I alpha-mannosidase 1B [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.4e-140  469.2   0.0   1.6e-140  469.0   0.0    1.0  1  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  469.0   0.0  8.9e-145  1.6e-140       1     458 []      42     513 ..      42     513 .. 0.93

  Alignments for each domain:
  == domain 1  score: 469.0 bits;  conditional E-value: 8.9e-145
                     HHHHHHHHHHHHCTTSSEEETTTTEEE-SS.SS-CCHHHHHHHHHHCCHHHHHHHHHHHHHHC----S...SS.EEEHHHHHHHHHHHHHHHHHH CS
  Glyco_hydro_47   1 afkhswegYkkyAwghDelrPlskkgrdtfgglgatlvDsLdtllimglkeefeeaveavekkidfdts..dskevsvFEttIRyLGGLlsaydl 93 
                     af+++w+gY ++ ++hD l+P+s +  d  + +gat vD+L+t++im+  + ++++++++  +idf+t+   ++++s+FEt+IRyLGGL+s ydl
      CCE30723.1  42 AFQTAWDGYYEFTFPHDTLMPVSAGSADDRNSWGATAVDALSTAIIMEDAKTVDQILSYIP-TIDFTTTieVNSSISLFETNIRYLGGLMSGYDL 135
                     79***********************************************************.****9642135689******************* PP

                     H.............S-HHHHHHHHHHHHHHHHGGGSSTTS---SEEETTT--EE-.STCGCEEEHHHHCSSHHHHHHHHHHHT-CHHHHHHHCCH CS
  Glyco_hydro_47  94 s............ekkedvllekAveladrLlpAFdtpsglpvarvnlkkrkaskkerassesvlAelgslslEftrLsqlTgdkkYedlaervt 176
                                  +k+ d ll++A++lad L  AFdtp+g+p+++v ++++++++   ++ ++  A +g+l+lE+trLs+lTg+k+Y++la+++ 
      CCE30723.1 136 LkgpfrglvhdynSKNVDALLQQAKTLADGLSVAFDTPTGIPINTVFFNPTRRANV--SEDTNGPAGFGTLVLEWTRLSDLTGNKTYAELAQKAQ 228
                     ************999*********************************76664443..3333456****************************** PP

                     HHHHCHC.C.HHHTTB-BSEEETTT--EESTEE-SSTTTHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHH.TEEE-TTT..--EEE-EECT CS
  Glyco_hydro_47 177 kaleelq.ektklpglvpikidastgkfvaekislgargDSyYEYllKqylllggeeeqyrkmyeealdaikkhllfrpskkkeddllfvgevts 270
                     k+l + +   + +pglv+i+++++tg+f+++  ++g++ DSyYEYl+K+yl+  +e  +y++++ ea++++++hl+++ps+++  d++f++e++ 
      CCE30723.1 229 KYLVDPTgVPQGYPGLVGITVNITTGQFTDNLGHWGGGVDSYYEYLIKMYLYDPKEFGHYKDRWVEAANSTMEHLASHPSSRH--DVTFLAEYN- 320
                     *****9997778********************************************************************999..9******96. PP

                     TCTS.EE-EEEGGGGHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS.....S-E.CTSSSSEEE-.GGG--B---- CS
  Glyco_hydro_47 271 teegklspeidhLscFlgGllalgakllekeedlelAkkltegcvkayeatktglmPEifevkpcesaeecew.neekkdealkriedrkyllRP 364
                       ++++ p+ +hL+ F+gG+++lg+ ll++  +++++  lte+++++y +t+++++PE+f++ p  +++  ++ +++ +++a  +++ + y+lRP
      CCE30723.1 321 --DTRIIPSSQHLASFAGGNFILGGLLLNEARYIDFGITLTESYYETYVQTASKIGPEVFRWIPAGNNTAPPAeDAAFYAKAGFWVTYKDYVLRP 413
                     ..788**********************************************************9876444433033334444448999******* PP

                     HHHHHHHHHHHHH--THHHHHHHHHHHHHHHHCEETTEE--ECETTSS.S-EE-S-B-HHHHHTHHHHHHHHC-S-TTT-.....TTTEEE-TTS CS
  Glyco_hydro_47 365 EaiESlfylYritgdekyrevgwemfealekatktesgysaledVtke.epekeDemeSFwlaEtlKYlYLlFsdedvls.....ldeyVfnTeA 453
                     E+ ESl+y+Yr+tgd+ y+ ++w++f+a+++++++  ++s+l dVt    ++k+D +eSF+laEtlKY YL+F++++ ++      +++VfnTeA
      CCE30723.1 414 ETLESLYYAYRMTGDKIYQTMAWNAFTAIRDRCRAGVAFSGLTDVTLPdGGQKDDYQESFFLAETLKYAYLIFAEDSDVQfqgrrKNKFVFNTEA 508
                     **********************************************88788999*************************999**9********** PP

                     -EEE- CS
  Glyco_hydro_47 454 Hplkr 458
                     Hp+++
      CCE30723.1 509 HPFRI 513
                     ***85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4066.45
//
Query:       CCE30724.1  [L=162]
Description: uncharacterized protein CPUR_04573 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-15   55.9   0.0    5.6e-15   55.6   0.0    1.1  1  SnoaL_4   SnoaL-like domain
  ------ inclusion threshold ------
      0.026   14.5   0.5       0.75    9.8   0.0    2.5  3  DEC1      Deleted in esophageal cancer 1 family


Domain annotation for each model (and alignments):
>> SnoaL_4  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   6.2e-19   5.6e-15       5     126 ..      12     143 ..       9     144 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 6.2e-19
                 HHHHHHHHHHHHHHHHHTT-HHHHHTTEEE..EEEEEETTS....--EESHHHHHHHHHSHHHHHH-EEEEE---EEEE.ETTEEEEEEEEEEEEEETT CS
     SnoaL_4   5 dreaIrdlvarygyylDtkdweeladlFte..davvdytgvg..egvlegrdairaalrealdgfaltqHllsnpliel.dgdtAtgrayllatlvrdg 98 
                   ea+ d ++r+    D++d + + + F+e  d++ +++  +     ++g  ai+++ ++   ++++t+H+ sn ++ l + d+A+ ++ + a++  +g
  CCE30724.1  12 RTEAVTDALHRVLAGFDHNDVDMFKSAFAEgeDVTMEIRD-EtnMPPFKGLSAIVNKAFGF-VSKLDTTHMASNIRVFLeTDDKASLVCLVSAQHAPAG 108
                 579**************************999*******6.45878899999999999997.6999*************66689***********7777 PP

                 ....EEEEEE..EEEEEEEEEEE...TTEEEEEEE CS
     SnoaL_4  99 ....dggrqvlaggryedelvre...dggWrisrr 126
                     ++g+++l g+ ye++lvre   +g W+i ++
  CCE30724.1 109 rakePAGPKYLVGAEYEISLVREsgaEGLWKIMKW 143
                 6666669****************555556***775 PP

>> DEC1  Deleted in esophageal cancer 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.019   1.7e+02      30      37 ..      15      22 ..       4      26 .. 0.86
   2 ?    9.8   0.0   8.4e-05      0.75      42      68 ..     111     137 ..      96     139 .. 0.88
   3 ?   -3.2   0.1         1   9.2e+03      42      52 ..     142     152 ..     140     154 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.019
        DEC1 30 vvtdalhr 37
                 vtdalhr
  CCE30724.1 15 AVTDALHR 22
                58*****9 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 8.4e-05
        DEC1  42 kwqaGvcyngGkdfavslvrPkaaeGi 68 
                 k  aG  y  G ++ +slvr   aeG+
  CCE30724.1 111 KEPAGPKYLVGAEYEISLVRESGAEGL 137
                 5669999******************96 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1
        DEC1  42 kwqaGvcyngG 52 
                 kw a v ++ G
  CCE30724.1 142 KWIARVQWADG 152
                 88888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1215.63
//
Query:       CCE30725.1  [L=207]
Description: BLI-3 blue-light-inducible Bli-3 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-22   79.9   0.0    2.1e-22   79.3   0.0    1.2  1  Pyrid_ox_like   Pyridoxamine 5'-phosphate oxidase like
      1e-08   35.2   0.0      2e-08   34.3   0.0    1.5  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> Pyrid_ox_like  Pyridoxamine 5'-phosphate oxidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.0   2.3e-26   2.1e-22       3     147 ..      31     184 ..      29     186 .. 0.91

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 2.3e-26
  Pyrid_ox_like   3 vkklkelvkdiktamLtttea.dgklksrPMatqkveedg.dlwfltkkdsdkvkeirkdsqvnlafsdeskkkyvsvsGtaevvedrakieelWs 96 
                    v+ l + +  +k +m+tt++a +g+l+sr Ma + +e++g dl f t+++s k ++++ d++vn+af + sk +++s++G+a++ +dr+ +++++s
     CCE30725.1  31 VDDLGKFITACKYGMMTTKSAkSGRLVSRCMALAGTENSGiDLIFHTNTESGKTDDVSSDPEVNMAFLN-SKGEWASIAGHASIITDRDAVKKYYS 125
                    77889999**********9875899**************989*************************99.899*********************** PP

  Pyrid_ox_like  97 pvvkawfpe........gkddpnltlikvtpeeaeyWdsksgklvsllkmakaavtgkk 147
                     ++kaw+ +        +++dp++ ++++++e+  y  s +++++ ++++a++ + gk 
     CCE30725.1 126 VALKAWLGDlgdgvhdaSENDPRIGIVRLDAETVTYALSDKSQVMQAVEVAQSTLRGKP 184
                    ******85333333333899**********************************99975 PP

>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   2.3e-12     2e-08       7      87 ..      36     117 ..      31     118 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 2.3e-12
                     HHHHHSSEEEEEE.EETTSEEEEEEEEEEEETTT..TEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEEESCH CS
  Putative_PNPOx   7 eflaeskavvlAT.vdedGrPnvspvllkagdgr..dgivfatnadsrklrnleenprvallflddelgrgvrieGtaelvsdg 87 
                     +f+ ++k+++++T   ++Gr  ++ + l+ g +     ++f+tn++s k+ ++ ++p v++ fl+ + g++ +i G a +++d+
      CCE30725.1  36 KFITACKYGMMTTkSAKSGRLVSRCMALA-GTENsgIDLIFHTNTESGKTDDVSSDPEVNMAFLNSK-GEWASIAGHASIITDR 117
                     799**********55599*********99.44443434689************************99.9*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1562.72
//
Query:       CCE30726.1  [L=380]
Description: probable DELTA(24)-STEROL C-METHYLTRANSFERASE (ERG6) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-30  103.3   0.1    1.2e-29  102.4   0.1    1.5  1  Sterol_MT_C      Sterol methyltransferase C-terminal
    7.3e-20   71.4   0.0    1.3e-19   70.6   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    2.7e-19   69.7   0.0    5.8e-19   68.6   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    1.4e-17   63.9   0.0      2e-17   63.4   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    1.3e-12   47.6   0.1    1.8e-12   47.1   0.1    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
    1.2e-11   45.2   0.0      3e-11   43.9   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
    2.6e-11   43.6   0.0    4.1e-11   43.0   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    7.5e-11   41.8   0.0    1.2e-10   41.1   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    7.6e-05   22.2   0.0    0.00017   21.1   0.0    1.5  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00013   21.6   0.0     0.0002   21.0   0.0    1.3  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
    0.00016   21.5   0.0    0.00026   20.8   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0015   18.1   0.0     0.0026   17.4   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0072   15.8   0.0      0.013   15.0   0.0    1.4  1  TehB             Tellurite resistance protein TehB
  ------ inclusion threshold ------
      0.016   14.3   0.0      0.023   13.8   0.0    1.2  1  RrnaAD           Ribosomal RNA adenine dimethylase
      0.024   14.6   0.0      0.046   13.7   0.0    1.5  1  Methyltransf_32  Methyltransferase domain
      0.043   13.4   0.0      0.085   12.4   0.0    1.4  1  MetW             Methionine biosynthesis protein MetW
       0.16   12.0   0.8       0.42   10.7   0.8    1.7  1  Hormone_3        Pancreatic hormone peptide


Domain annotation for each model (and alignments):
>> Sterol_MT_C  Sterol methyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.1   1.1e-32   1.2e-29       1      65 [.     314     378 ..     314     379 .. 0.99

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 1.1e-32
  Sterol_MT_C   1 ltvfrmtkvGrfithnlvkvleflglapkGtqkvaefLekAadsLvaGGkegiFTPmylfvaRKP 65 
                  +t++rmt++Gr+i+hnl ++le+l++ap+Gt+k+a++L+ Aad+LvaGG+e++FTPmyl+++RKP
   CCE30726.1 314 FTIVRMTTWGRTIAHNLAGLLETLRIAPAGTKKTADSLALAADCLVAGGREKLFTPMYLMIGRKP 378
                  799************************************************************** PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   1.2e-22   1.3e-19       1      94 [.     134     230 ..     134     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 1.2e-22
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvGcG G  a+++ak   a+v+g++ +++++++a + a++egl  +++fv++d+ ++ fe+n+fD+v++ e+  h + +e + ++i RvLkpg
       CCE30726.1 134 LDVGCGVGGPAREIAKFTgAHVTGLNNNDYQIDRATHYAQKEGLanQLDFVKGDFMQMSFEENTFDAVYAIEATVHAPTLEGIYSQIFRVLKPG 227
                      8**************8778*************************************************************************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G++
       CCE30726.1 228 GVF 230
                      *97 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   5.5e-22   5.8e-19       1      97 []     133     228 ..     133     228 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 5.5e-22
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      vLd+GcG G  ++++ak  g a+vtg+  ++ ++++a + a++egl  +++fv+gd+ +++fe+++fD+v+++ a  h   + le ++++i+rv
       CCE30726.1 133 VLDVGCGVGGPAREIAKFTG-AHVTGLNNNDYQIDRATHYAQKEGLanQLDFVKGDFMQMSFEENTFDAVYAIEATVH--APTLEGIYSQIFRV 223
                      9***************9987.***************************************************988444..5689********** PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      LkpgG
       CCE30726.1 224 LKPGG 228
                      ****9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   1.9e-20     2e-17       2     111 ..     128     234 ..     127     277 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 1.9e-20
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkil 94 
                      ++g++vlD+GCG G  + e+a   +++a+v+G+ ++   i +A+  aqk gl   + F +gd+ +++  +e+++fD + + e+  + + ++ i+
       CCE30726.1 128 KEGMKVLDVGCGVGGPAREIA--KFTGAHVTGLNNNDYQIDRATHYAQKEGLAnQLDFVKGDFMQMS--FEENTFDAVYAIEATVHAPTLEGIY 217
                      789******************..5789**************************88************..************************* PP

  Methyltransf_31  95 eeiervlkpggillied 111
                       +i+rvlkpgg++ + +
       CCE30726.1 218 SQIFRVLKPGGVFGVYE 234
                      ************97544 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.1   1.7e-15   1.8e-12       9     217 ..      79     286 ..      71     291 .. 0.78

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 1.7e-15
                 HHHHHHTS-HHHHCTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHT CS
        CMAS   9 nikahYDlsndffalfldptmtYsCAyferddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvde 107
                   ++ Y l+ d+++   +++  + C  f++ +  +++A  +  + + + +++k+Gm++Ld+GcG G+ +r+ ++  +++v gl   + q  +a +  ++
  CCE30726.1  79 LTRHYYNLATDLYEYGWGQSFHF-C-RFSHGEP-FHQAIARHEHYLAHSIGIKEGMKVLDVGCGVGGPAREIAKFTGAHVTGLNNNDYQIDRATHYAQK 174
                 46778899999999999988877.4.4655554.8999999999999**************************************************** PP

                 S-SSS-EEEEES-GGG---...--SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---...BHHH CS
        CMAS 108 ldlerkvevklldyedlde...kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkelaerglklkfidkeiFPgGelp...siee 200
                 ++l+++ +    d+ +++     +d+v +++a+ h     ++  +++++++lk++G++ +    ++++  + +  lk + i+  i  g  +    +++e
  CCE30726.1 175 EGLANQLDFVKGDFMQMSFeenTFDAVYAIEATVH--APTLEGIYSQIFRVLKPGGVFGVYEWLMTEQYDNDN--LKHREIRLGIEQGDGISnmcKVSE 269
                 **************997533378999999999866..56799999*************998877776665553..333446655555443330003344 PP

                 HHHHHHHTT-EEEEEEE CS
        CMAS 201 ieeeiseagftvvdves 217
                   + +++agf+++++e 
  CCE30726.1 270 ALDAMKAAGFELLRAED 286
                 44466667777776665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   2.9e-14     3e-11       1      99 []     134     230 ..     134     230 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 2.9e-14
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhlkdirevldnirklL 93 
                      L++GcG+G  +r++++   ++++tg+  +  +i d++++ a++e+  +n++++ + d  + + + ++fD+v+a+++  h ++++ + ++i ++L
       CCE30726.1 134 LDVGCGVGGPAREIAKF-TGAHVTGLNNNDYQI-DRATHYAQKEG-LANQLDFVKGDFMQMSFEeNTFDAVYAIEATVHAPTLEGIYSQIFRVL 224
                      8*************776.***************.99999999887.6689999999998887778***************************** PP

  Methyltransf_12  94 kpgGrl 99 
                      kpgG++
       CCE30726.1 225 KPGGVF 230
                      ****86 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   3.9e-14   4.1e-11      21     163 ..     128     282 ..     107     284 .. 0.79

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 3.9e-14
  Methyltransf_23  21 raggrvLdiGcGtGillevlren.gfsvtgvDlspeaveiae.......kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqia 106
                      ++g++vLd+GcG+G  +++++++ g++vtg   ++ ++++a         a +  +++ d ++ ++++++fd ++++e + h p ++   +qi+
       CCE30726.1 128 KEGMKVLDVGCGVGGPAREIAKFtGAHVTGLNNNDYQIDRAThyaqkegLANQLDFVKGDFMQMSFEENTFDAVYAIEATVHAPTLEGIYSQIF 221
                      7889**********999999998899**************97888887744444444444478888999************************* PP

  Methyltransf_23 107 tllkpgGylllseplasl.k.edrllld..wlylvpagrhi.sffsarslkelleeaGlevv 163
                      + lkpgG++ + e+l    + +d+l ++  +++  ++g+ i ++   ++  +++++aG+e++
       CCE30726.1 222 RVLKPGGVFGVYEWLMTEqYdNDNL-KHreIRLGIEQGDGIsNMCKVSEALDAMKAAGFELL 282
                      *********9999866542323333.323466666666444488888899999999999975 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.2e-13   1.2e-10      39     154 ..     121     235 ..     111     244 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.2e-13
                      HHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-TTS-T-EEEEEEES-GGG-S- CS
  Ubie_methyltran  39 veklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfeddsfDvvtvsfGlrnvtD 131
                      + +  + k+g kvlDv +G g  a ++++  g+  +v++l+ n+  ++ + + +++eg   +++f++++ +++ fe+++fD v         + 
       CCE30726.1 121 LAHSIGIKEGMKVLDVGCGVGGPAREIAKFTGA--HVTGLNNNDYQIDRATHYAQKEGLAnQLDFVKGDFMQMSFEENTFDAVYAIEATVHAPT 212
                      55667899********************99987..6899*******************9889*******************7644444456778 PP

                      HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 132 klkaLkeayrvlkpGGrlvvlef 154
                       +    +++rvlkpGG + v e 
       CCE30726.1 213 LEGIYSQIFRVLKPGGVFGVYEW 235
                      88999************999885 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.9     3e+03      39      73 ..      15      49 ..       3      85 .. 0.53
   2 !   21.1   0.0   1.6e-07   0.00017     159     257 ..     127     231 ..     115     247 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.9
        PrmA 39 eedifepaleeeelkeevkvkalfkeeteakelia 73
                + + f++al+ ++ +++  + a+f++ ++ak+ + 
  CCE30726.1 15 RDAAFNKALHGKSAQARGGIAAMFSKGHDAKKAAV 49
                44445566666666777778888887777666432 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.6e-07
        PrmA 159 vkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellk....eekadviv...aNILaevlielaedikklv 250
                 +keg +vlDvG+G G  a   ak+  ++v+++  ++  ++ a + a++ +++++l+  ++++ ++    e+++d +    a + a  l  ++++i +++
  CCE30726.1 127 IKEGMKVLDVGCGVGGPAREIAKFTGAHVTGLNNNDYQIDRATHYAQKEGLANQLDF-VKGDFMQmsfeENTFDAVYaieATVHAPTLEGIYSQIFRVL 224
                 68899*************************************************986.777777555558899987622368999************** PP

        PrmA 251 kegglli 257
                 k+gg++ 
  CCE30726.1 225 KPGGVFG 231
                 ****985 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.9e-07    0.0002       3      61 ..     132     207 ..     130     254 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.9e-07
  Methyltransf_15   3 vilDlfsGaGGnviqfalv.fekviaieinleklacaqhNaevYgvsdkitlvlgdvfe................l 61 
                       +lD+ +G GG + ++a+  + +v +++ n  ++  a+h a+  g ++++++v+gd+++                +
       CCE30726.1 132 KVLDVGCGVGGPAREIAKFtGAHVTGLNNNDYQIDRATHYAQKEGLANQLDFVKGDFMQmsfeentfdavyaieaT 207
                      58***************977899**********************************9965555555555554443 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.4e-07   0.00026      69     167 ..     121     228 ..     110     248 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.4e-07
                 TT....--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GGGTTGGG-SEEEEEESSBBSS--H..... CS
        PCMT  69 le....lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGrkGyeekaPYdaihvgaaapeiPe..... 157
                 l     +k+g++vL+vG+G G  +  +a++ g++    +++     +++a++  +k++l+ ++ +v gD  +   e+  +da++   a+ + P+     
  CCE30726.1 121 LAhsigIKEGMKVLDVGCGVGGPAREIAKFTGAHV--TGLNNNDYQIDRATHYAQKEGLAnQLDFVKGDFMQMSFEENTFDAVYAIEATVHAPTlegiy 217
                 4444449***********************99876..9******99***********99868********999889999**998765555544311111 PP

                 .HHHHTEEEEE CS
        PCMT 158 .alidQLkeGG 167
                  ++++ Lk+GG
  CCE30726.1 218 sQIFRVLKPGG 228
                 16677777777 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.4e-06    0.0026      30     101 ..     128     201 ..     114     230 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.4e-06
                 CTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTT.STTS-EEEE CS
         MTS  30 elsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvlee.veekkfdli 101
                 ++  kvlD+GcG+G  + ++ak++   +vt ++++ + ++ a++ +++++l+  +++v+ d ++  +ee+ fd++
  CCE30726.1 128 KEGMKVLDVGCGVGGPAREIAKFTGA-HVTGLNNNDYQIDRATHYAQKEGLAnqLDFVKGDFMQMsFEENTFDAV 201
                 46679*****************9887.89******9999999999999999888999999988751567788876 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.2e-05     0.013      25      98 ..     124     200 ..     110     243 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
                 HCCCS-S-EEEEES-TTSHHHHHH.HHTT-EEEEEES-HHHHHHHHHHHHHTT-TT.EEEEE--GGG----S-.EEE CS
        TehB  25 avkivkpgkvldlgcgqgrnslyl.sllgydvtawdknensiafleeikekenlkn.istalydineaklder.ydf 98 
                 ++ i +  kvld+gcg g  +  + +  g +vt +++n+  i    + ++ke l n ++    d  +++++e+ +d 
  CCE30726.1 124 SIGIKEGMKVLDVGCGVGGPAREIaKFTGAHVTGLNNNDYQIDRATHYAQKEGLANqLDFVKGDFMQMSFEENtFDA 200
                 55666778********998776651578*************************975266666788888887762444 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.2e-05     0.023      26      96 ..     125     199 ..     116     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.2e-05
                 H-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHHHHCT CS
      RrnaAD  26 lnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpeevte 96 
                 + ++e ++vl++g G+G   +e+ak    +v+ l +    + + ++  +   ++++l  v+ Df+++++ e+  +
  CCE30726.1 125 IGIKEGMKVLDVGCGVGGPAREIAKFTgAHVTGLNNNDYQIDRATHYAQkegLANQLDFVKGDFMQMSFEENTFD 199
                 5689***********************9999999887766666655444566999**************997654 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.4e-05     0.046      24      93 ..     128     192 ..     111     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.4e-05
  Methyltransf_32  24 sgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeat 93 
                      ++ ++v+DvG+G g  ++ +a      + +v+g++ ++  +++a + a+k g  ++++l f +++  + +
       CCE30726.1 128 KEGMKVLDVGCGVGGPAREIAK---FTGAHVTGLNNNDYQIDRATHYAQKEG--LANQLDFVKGDFMQMS 192
                      55689***************99...88*************************..9999999999877654 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.1e-05     0.085      11      80 ..     127     202 ..     117     225 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.1e-05
        MetW  11 ikpgsrvldlGcGdGellellkeekqvdgrGleldeegvaecv....akGlsviqgdldkdl..enfedksfdyvv 80 
                 ik+g +vld+GcG G   + +++  + +  Gl++++  + +++    + Gl+   + +  d+    fe+++fd v 
  CCE30726.1 127 IKEGMKVLDVGCGVGGPAREIAKFTGAHVTGLNNNDYQIDRAThyaqKEGLANQLDFVKGDFmqMSFEENTFDAVY 202
                 8999***************99999**********999998876222234665544444445411468888888774 PP

>> Hormone_3  Pancreatic hormone peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.8    0.0004      0.42       6      31 ..      59      88 ..      58      88 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
                XXXTTS-HHHHH....HHHHHHHHHHHHHT CS
   Hormone_3  6 rPgedaspEeLa....kYyaaLrhYlnlvT 31
                +P+e++++Ee a     Y +  rhY+nl T
  CCE30726.1 59 KPAENETAEERAartaEYATLTRHYYNLAT 88
                7*********8533337***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2740.36
//
Query:       CCE30727.1  [L=377]
Description: related to cell cycle control protein cwf5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-10   39.8   0.0    5.6e-10   38.9   0.0    1.5  1  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
     0.0017   18.3   0.0     0.0031   17.5   0.0    1.4  1  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
     0.0033   17.3   0.0     0.0054   16.6   0.0    1.3  1  RRM_occluded  Occluded RNA-recognition motif
     0.0093   16.0   0.1      0.024   14.7   0.0    1.6  2  RRM_3         RNA binding motif
  ------ inclusion threshold ------
      0.054   13.7   0.0       0.13   12.5   0.0    1.7  2  RRM_8         RRM-like domain


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   1.6e-13   5.6e-10       1      69 [.     237     301 ..     237     302 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.6e-13
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTT.EEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealng.kklggrel 69 
                 lfV+++  d+ e++L+++F+  G+iks+  ++        +afV++e++e+AekA +a++g   + g++l
  CCE30727.1 237 LFVTGVEDDLPEHKLRDFFKVHGKIKSLVCSHM-----SHCAFVNYETREAAEKAAAACHGrAVIAGCPL 301
                 8************************99999995.....9**********************777777766 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   8.7e-07    0.0031       6      52 ..     239     286 ..     236     287 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8.7e-07
  Nup35_RRM_2   6 VsGydteli.elVlehFasfGeIvkhyvpkevsvmyvkfesekdaekA 52 
                  V+G++ +l   + +++F++ G+I    ++  ++ ++v +e++ +aekA
   CCE30727.1 239 VTGVEDDLPeHKLRDFFKVHGKIKSLVCSHMSHCAFVNYETREAAEKA 286
                  999999998356666********************************9 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.5e-06    0.0054       6      68 ..     239     301 ..     232     307 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.5e-06
  RRM_occluded   6 llplsDtvnkariralveekegeikkivLvpdheGAivefkdekiagkasLaLdgse.fegkkl 68 
                   + ++ D   + ++r++++ + g+ik +v+    ++A+v ++ +++a ka+ a +g   ++g  l
    CCE30727.1 239 VTGVEDDLPEHKLRDFFKVH-GKIKSLVCSHMSHCAFVNYETREAAEKAAAACHGRAvIAGCPL 301
                   45799***************.****************************999998763456555 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         3   1.1e+04      42      59 ..     135     152 ..     126     159 .. 0.60
   2 !   14.7   0.0   6.6e-06     0.024       4      56 ..     237     289 ..     235     298 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3
                 EEESSHHHHHHHHHHHHH CS
       RRM_3  42 vrFkedeeakkalekate 59 
                 v  k+d++a+++l  +++
  CCE30727.1 135 VYEKTDDKARELLRRLAN 152
                 444455557777766655 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6.6e-06
                 EEEEE-SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHHHH CS
       RRM_3   4 lklsGlnkelsredikellsklgevayvdyekgdkegevrFkedeeakkalek 56 
                 l+++G++++l+ ++++++++ +g+++    ++  + + v +++ e+a+ka  +
  CCE30727.1 237 LFVTGVEDDLPEHKLRDFFKVHGKIKSLVCSHMSHCAFVNYETREAAEKAAAA 289
                 7899********************************************99765 PP

>> RRM_8  RRM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.8   9.9e+03      61      82 ..      57      78 ..      53      80 .. 0.77
   2 ?   12.5   0.0   3.6e-05      0.13      34      84 ..     256     303 ..     224     308 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.8
       RRM_8 61 hDaerarsathgrniYDggClL 82
                + a+ra++  +  ni   +  L
  CCE30727.1 57 NGADRAQGRKKRTNICLTCARL 78
                5689999999999998777665 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.6e-05
       RRM_8  34 daYGavavqvLavstwqvealvsflsshDaerarsathgrniYDggClLdv 84 
                   +G  +++ L+ s ++  a v + ++  ae+a +a hgr +  g C L v
  CCE30727.1 256 KVHG--KIKSLVCSHMSHCAFVNYETREAAEKAAAACHGRAVIAG-CPLRV 303
                 5555..3567999999999**********************9875.55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2920.83
//
Query:       CCE30728.1  [L=114]
Description: uncharacterized protein CPUR_04577 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00022   21.2   0.0    0.00049   20.1   0.0    1.5  1  Complex1_LYR    Complex 1 protein (LYR family)
      0.007   17.1   0.3      0.011   16.4   0.2    1.3  1  Complex1_LYR_2  Complex1_LYR-like
  ------ inclusion threshold ------
       0.11   13.1   0.1       0.13   12.8   0.1    1.2  1  Complex1_LYR_1  Complex1_LYR-like


Domain annotation for each model (and alignments):
>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   8.2e-08   0.00049       3      55 ..       2      57 ..       2      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8.2e-08
  Complex1_LYR  3 vLsLYRalLRea.rkfpdyn.treyfrrriRdeFrknkhvt.Dpekieellkkgre 55
                  +L+ YR+l+R+a   f+++      +++ iR++Fr+  +++ +++  +  +k ++e
    CCE30728.1  2 ALAAYRNLMRAArLAFEGDApVLIAAKQSIRTQFRQQANLSpSEQTTQDSIKHAQE 57
                  5899********77888888666666*************99899999999999998 PP

>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   1.9e-06     0.011       2      49 ..       3      64 ..       2      73 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.9e-06
  Complex1_LYR_2  2 lsLYrrllrelrelppelr....slgdayvraefrrhk...........hlknpeeialflkn 49
                    l+ Yr+l+r++r l  e       + ++ +r +fr+++            +k+++e+a+fl++
      CCE30728.1  3 LAAYRNLMRAAR-LAFEGDapvlIAAKQSIRTQFRQQAnlspseqttqdSIKHAQEVAQFLRA 64
                    678********8.42222245668889999999999667888999999999999999999975 PP

>> Complex1_LYR_1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.2e-05      0.13       4      67 ..       3      68 ..       1      97 [. 0.61

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.2e-05
  Complex1_LYR_1  4 lrlyrallkaarrfPlrsrreiva..eevraafrhplndslttkevdyklllgweraaaiqtyaen 67
                    l  yr+l++aar     ++  ++a  + +r++fr+  n s  ++  ++ +    e a  +++   +
      CCE30728.1  3 LAAYRNLMRAARLAFEGDAPVLIAakQSIRTQFRQQANLSPSEQTTQDSIKHAQEVAQFLRANVVQ 68
                    778*********87666666665523469*****99888776666555555555544444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 866.04
//
Query:       CCE30729.1  [L=445]
Description: probable zuotin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-32  110.5   2.6      6e-32  110.5   2.6    3.7  4  RAC_head     Ribosome-associated complex head domain
    1.9e-20   72.8   1.8    8.1e-20   70.7   1.8    2.2  1  DnaJ         DnaJ domain


Domain annotation for each model (and alignments):
>> RAC_head  Ribosome-associated complex head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.7      0.83   7.5e+03       6      12 ..     125     131 ..     115     161 .. 0.51
   2 ?   -2.7   0.5       1.4   1.2e+04       7      16 ..     262     271 ..     255     285 .. 0.59
   3 ?   -9.7  12.3         2   1.8e+04      12      79 ..     302     314 ..     266     344 .. 0.57
   4 !  110.5   2.6   6.7e-36     6e-32       1      97 [.     347     442 ..     347     443 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.83
                 XXX-HHH CS
    RAC_head   6 aaKkalK 12 
                   Kk lK
  CCE30729.1 125 HRKKVLK 131
                 2222222 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.4
                 XX-HHHHHHH CS
    RAC_head   7 aKkalKKekr 16 
                 + ++ +K+k+
  CCE30729.1 262 KNANSRKKKK 271
                 3333334443 PP

  == domain 3  score: -9.7 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHTGGGSSSS--.HHHHHHHHHHHHHHHHH--HHHHHHHHHHHTT---HHHHHHHHH CS
    RAC_head  12 KKekralrgavkdanYFadgeaekakvidkvLedvdllieklddeeLaelaekleaakdaeevkavfk 79 
                  K+k++l +                                                        + +
  CCE30729.1 302 SKNKKRLEKE-------------------------------------------------------AAE 314
                 2222222222.......................................................222 PP

  == domain 4  score: 110.5 bits;  conditional E-value: 6.7e-36
                 XXXXXXXX-HHHHHHHHHHHHHHHTGGGSSSS--.HHHHHHHHHHHHHHHHH--HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTSS-GGG-- CS
    RAC_head   1 KKaKeaaKkalKKekralrgavkdanYFadgeaekakvidkvLedvdllieklddeeLaelaekleaakdaeevkavfkeevkelveagklkeeklk 97 
                 KKaKeaaK+a+KK+kr+l+g+vkdanYFa+gea+ a++id+vL dv+l+  k+d++e+a+la kl++ + a+e+kav++ evk+lv+agklk++++k
  CCE30729.1 347 KKAKEAAKNAVKKNKRVLKGSVKDANYFASGEAS-AAQIDSVLGDVELVQGKIDPDEIAALAGKLNGLTVADEIKAVWAGEVKRLVDAGKLKDGDVK 442
                 9*********************************.99********************************************************9987 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   1.8     9e-24   8.1e-20       1      63 []     102     169 ..     102     169 .. 0.93

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 9e-24
                 HHHHHHTSSTT...G-HHHHHHHHHHHHHHHSTTTS..CCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskd...asedeIkkaYrklalkyHPDkn..pkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 d+Y+iLg+sk    a+e++Ikka+rk++lk+HPDk+  ++ +e ++ Fk+i++A+evL dp +R+qYD
  CCE30729.1 102 DHYKILGISKYrwkATEEQIKKAHRKKVLKHHPDKKaaQGRTEDDQFFKCIQKATEVLLDPVRRRQYD 169
                 89********98889*******************8844556699***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2891  (0.161247); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                       163  (0.00909142); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.52
# Mc/sec: 2588.14
//
Query:       CCE30730.1  [L=377]
Description: uncharacterized protein CPUR_04579 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-08   33.2   0.1    7.2e-08   32.3   0.1    1.5  1  HLH       Helix-loop-helix DNA-binding domain


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1     4e-12   7.2e-08       1      52 [.     304     354 ..     296     355 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 4e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHCSTCSTTSS-STHHHHHHHHHHHHHHH CS
         HLH   1 rraahnerErrRRdriNsaleeLrellPslppskKlsKaeiLekAveYIkhL 52 
                 rr++h + E+rRR+ ++++++ L +l+P +   + +sK+++Lek+ e + +L
  CCE30730.1 304 RRRNHIQQEQRRRAVLKNGFSDLTDLVP-GLGARDMSKSAVLEKTAEWLERL 354
                 89**************************.778888************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2694.24
//
Query:       CCE30731.1  [L=104]
Description: uncharacterized protein CPUR_04580 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-26   92.6   0.4    2.3e-26   92.4   0.4    1.0  1  CVNH      CVNH domain


Domain annotation for each model (and alignments):
>> CVNH  CVNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.4   1.3e-30   2.3e-26       1     100 [.       3      98 ..       3      99 .. 0.94

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 1.3e-30
                 GGGSEEEEEE.ETT...EEEEEEE-TTSSEEEEEEEGGGTEEEETTEEEE..-BGGGSEEEEEEE--E....EEEEEEET.SS-EE.EEEEEGGGTEEE CS
                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
        CVNH   1 Fskscrdirl.dahgetiLhAecrredgsyqsssidLnkcigndnGslrw..gnfsesarnvrleeggeeeqvLeaeler.dgewvesseinLderIsN 95 
                 Fs ++++i+l +    ++L A+c +++g++q++s+dLn+c+gndnGs++w   nf+++a n++l+  g   +vL+a+l + dge v  ++i+L+erI+N
  CCE30731.1   3 FSITSQNIHLrE---AHLLYASCLDSEGNWQDCSFDLNDCLGNDNGSFVWdgDNFMDTAANMELD--G---SVLTATLLDnDGEPVGPRSIDLNERITN 93 
                 999*******44...56*********************************988***********7..4...7*****9988******999********* PP

                 ETTEE CS
                 xxxxx RF
        CVNH  96 nnGtL 100
                 +nG+L
  CCE30731.1  94 SNGQL 98 
                 ****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 816.13
//
Query:       CCE30732.1  [L=311]
Description: uncharacterized protein CPUR_04581 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-08   32.5   0.0    9.5e-08   32.0   0.0    1.3  1  Esterase       Putative esterase
    3.1e-05   23.5   0.0    5.4e-05   22.8   0.0    1.4  1  Peptidase_S9   Prolyl oligopeptidase family
    4.6e-05   22.8   0.0    6.7e-05   22.3   0.0    1.2  1  Hydrolase_4    Serine aminopeptidase, S33
      0.004   16.8   0.0     0.0075   15.9   0.0    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
     0.0046   17.6   0.1     0.0064   17.1   0.1    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.048   13.3   0.0      0.066   12.8   0.0    1.3  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
       0.13   11.9   0.0        0.2   11.3   0.0    1.3  1  Abhydrolase_8  Alpha/beta hydrolase


Domain annotation for each model (and alignments):
>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   3.7e-11   9.5e-08      72     161 ..     114     203 ..      90     251 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 3.7e-11
                 TSBTTSBB.TTEEETTCCCCCCHCHHHHTHHHHHHHH....HCSEECCC..EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHCTT CS
    Esterase  72 ysdwdlgarfyenategpgaeayetfltqeLlpllda....nfrtapdg..ravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgqee 161
                 y+  + +++  + + + ++a+++  ++++ ++p++++    ++++a ++  r ++G+S GGl++L++  + p++F  +++ Sp       +W++++
  CCE30732.1 114 YEPIYYDNGEPQTHLKWGEADNFLAAIQHDIMPFVEKslfgHLSFANKSirRGLFGHSYGGLFSLNALYTKPTLFDAIIAASPT------IWWNKD 203
                 55555556666778888999***************9832223445555578*******************************55......999833 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.1e-08   5.4e-05      65     104 ..     164     203 ..     142     222 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.1e-08
                   GEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCH CS
  Peptidase_S9  65 rlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlry 104
                   r +++G+SyGG+ ++ al  +p lF+a++a+ p + + ++
    CCE30732.1 164 RRGLFGHSYGGLFSLNALYTKPTLFDAIIAASPTIWWNKD 203
                   6689*****************************9988765 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.6e-08   6.7e-05      69     122 ..     156     208 ..     142     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.6e-08
  Hydrolase_4  69 vkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappl 122
                  +   ++  ++ l+GhS GGl +l++l ++p  ++++i ++P ++++++  +  +
   CCE30732.1 156 LSFANKSIRRGLFGHSYGGLFSLNALYTKPTLFDAIIAASPTIWWNKDS-IVNF 208
                  555566667889*********************************9875.4444 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.9e-06    0.0075      77     121 ..     167     205 ..     164     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.9e-06
                    EEEETHHHHHHHHHHHHHGGGEEEEEEESE.CSSCCHHHHHHHHHH CS
  Abhydrolase_1  77 lvGhSmGGmialayaaeyperVkalvllga.idpaaslieaqrqqa 121
                    l GhS+GG+++l+++   p   +a+++ ++ i        +++ ++
     CCE30732.1 167 LFGHSYGGLFSLNALYTKPTLFDAIIAASPtI-------WWNKDSI 205
                    68****************************53.......3333333 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   2.5e-06    0.0064      31     136 ..      95     241 ..      82     305 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.5e-06
                    EE--TTSTS-GGCS...................--HHHCHHHHHHHCCTT.................TTSEEEEEETCHHHHHHHHHHCC...... CS
  Abhydrolase_6  31 apDlpGhGrsdppp...................ldledladlaalldelaa...............gggpvvlvGHSlGGalalaaapla...... 86 
                    ++Dl   G++ +pp                   l + +++ ++a++++ ++                  +  l+GHS+GG+ +l    ++      
     CCE30732.1  95 VYDLYRRGPDLTPPsedgqyepiyydngepqthLKWGEADNFLAAIQHDIMpfvekslfghlsfanKSIRRGLFGHSYGGLFSLN---ALytkptl 187
                    5777777733333334444444443333334336666656666666666556888889999998776666799********9999...66666764 PP

                    ..EEEEES-..........----TTT...S----TTHHHHHHTT-CCCCHCCH..S-HSCCCC CS
  Abhydrolase_6  87 lvvgvlldppp........talpagl...laaalelllallallrllawlsre..plprlfla 136
                    +++ ++ +p+          +    +   +a a++++++  ++l+l +w s++  +      +
     CCE30732.1 188 FDAIIAASPTIwwnkdsivNFQ---EknfRAGAHPVPEGSSPSLIL-TWGSGKaeF-----PD 241
                    4444666663355554322233...244477777777777776665.888644331.....33 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.6e-05     0.066     104     142 ..     166     204 ..     155     300 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.6e-05
                    EEEEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCCCC CS
  Peptidase_S15 104 gmtGiSYlGttqllaaatgvpalkaivpeaaisdlyddy 142
                    g +G SY+G  +l a+ t++   +ai++++++  + +d+
     CCE30732.1 166 GLFGHSYGGLFSLNALYTKPTLFDAIIAASPTIWWNKDS 204
                    899****************************77666652 PP

>> Abhydrolase_8  Alpha/beta hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.7e-05       0.2     108     149 ..     162     202 ..     150     219 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.7e-05
  Abhydrolase_8 108 gqhlallgHSYGSlvaslAlddaaseVsdvvlyGSPGleaes 149
                    + +  l+gHSYG l +  Al        d++++ SP +  ++
     CCE30732.1 162 SIRRGLFGHSYGGLFSLNALYT-KPTLFDAIIAASPTIWWNK 202
                    556689**************99.5667788899999776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2454.14
//
Query:       CCE30733.1  [L=687]
Description: uncharacterized protein CPUR_04582 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-14   51.3   0.4      1e-12   47.6   0.2    2.5  2  Fungal_trans    Fungal specific transcription factor domain
  ------ inclusion threshold ------
      0.061   13.4   2.2       0.12   12.4   2.2    1.6  1  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr
       0.11   12.8   0.0        2.7    8.3   0.0    2.5  2  FpoO            F420H2 dehydrogenase subunit FpoO
       0.45   10.9   3.6        1.6    9.1   3.2    2.1  2  AIF_C           Apoptosis-inducing factor, mitochondrion-asso
        1.5    8.7  24.3        2.9    7.8  24.3    1.5  1  TFIIA           Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.2   2.9e-16     1e-12      73     248 ..     240     411 ..     171     428 .. 0.76
   2 ?    0.6   0.0     0.064   2.3e+02     215     248 ..     533     565 ..     499     591 .. 0.77

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 2.9e-16
  Fungal_trans  73 plraeili....hedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDkt 165
                    ++++ l     +++++  ++ ++ +q+Lll +ly    s+ + ++ ++++a +l+++ g hr +s +         +++a   r l+w ++ lDk 
    CCE30733.1 240 RQSQANLEtalaNTQLFLATR-VENVQALLLGALYAVDVSRPSVAWQLSCMAAQLCQTGGYHRAESLKH------DIPDTARLKRLLFWHVYTLDKG 329
                   333333335566888899999.*********************************************99......88888***************** PP

  Fungal_trans 166 ialklGrppllddsqinlpLPcddddlw..esddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlq 248
                   + l lGr p +++ +i++p   ++d l+  es+  + + +++     ++   +  ++ +aLk+ ++++++   ++ ++++q ++q
    CCE30733.1 330 LGLRLGRAPVIHECDIDIPRVFEFDGLGqlESTIPTLWINMS---YLQSRIYEQLYSPSALKSSQAELVDRARALASECRQFETQ 411
                   *********99********66666655411555566666666...7778888888888888888888877777777777776666 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.064
  Fungal_trans 215 rkiasfllaLkkilskiagsllsiekqlqqrdlq 248
                   ++    l++L++++ ++ag l+   k  qq+d+ 
    CCE30733.1 533 SESIDKLYRLCQVMCDVAG-LYVEAKSQQQQDQN 565
                   56677899***********.77777777777765 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.2   3.4e-05      0.12      79     169 ..     552     683 ..     496     687 .] 0.65

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.4e-05
                     HHHHHH-S-S.---HHHHHHHTTHHHHHHC--------------..........................................--------- CS
  Neur_chan_memb  79 lnvhhrsprt.htmpawvrkvfldklprllfmkrpsevkdnekkl.........................................ssgasseae 131
                     l+v  +s+++  +    +   f   l +l fm ++ ++ +n  ++                                         ++ ++++++
      CCE30733.1 552 LYVEAKSQQQqDQNMVPIGDEFEMYLGQLGFMPTEDQAMTNSGDNeagpaslssqaaqiadwfsgnrnmmglleedlshigsfpwmQQHQYQQNQ 646
                     45555444441222333455566666667777666666666665578888888888888888888888888888888777777776444444444 PP

                     -----------------------------SS---TTGG CS
  Neur_chan_memb 132 elilskskseskkaklseeqgsekastckckckegeea 169
                     +  l ++++ +++ +++++++++++++++++++++++ 
      CCE30733.1 647 QQQLLQHQQ-HQQHQQHQQHQQHQQHQQQHQHQHQHQH 683
                     444444443.3444455555555555555555444433 PP

>> FpoO  F420H2 dehydrogenase subunit FpoO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.1   3.8e+02      71      96 ..     271     296 ..     265     308 .. 0.88
   2 ?    8.3   0.0   0.00075       2.7      29      62 ..     457     490 ..     448     534 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.1
        FpoO  71 rlydvevqvPsfskgsekktaklckr 96 
                  ly v+v++Ps   + +   a+lc++
  CCE30733.1 271 ALYAVDVSRPSVAWQLSCMAAQLCQT 296
                 599*********************87 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00075
        FpoO  29 PeGvwkGlcekclkaakktydelskeeasgtaGk 62 
                 P G +  +c++cl++a+k+++ +++ ++++t G 
  CCE30733.1 457 PPGSITRFCDECLETARKAMKVHQECTKKSTIGG 490
                 66777889*************9999998888874 PP

>> AIF_C  Apoptosis-inducing factor, mitochondrion-associated, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.98   3.5e+03      27      97 ..     352     422 ..     345     433 .. 0.54
   2 ?    9.1   3.2   0.00045       1.6      31      92 ..     621     682 ..     617     687 .] 0.59

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.98
       AIF_C  27 gyeaiGivDssLptvgvfakatekdtpkaaveesseesksekeeeaskekseekseeekkkkekkeeeedy 97 
                  ++++G ++s++pt+ +     ++   ++  + s+ +s++++  +++++ ++e ++ e++++ ++e++ +y
  CCE30733.1 352 EFDGLGQLESTIPTLWINMSYLQSRIYEQLYSPSALKSSQAELVDRARALASECRQFETQADVAREKTYQY 422
                 57888888999998877666666555544443333333333333333333333333444445555555555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00045
       AIF_C  31 iGivDssLptvgvfakatekdtpkaaveesseesksekeeeaskekseekseeekkkkekke 92 
                 +G+++  L+ +g f   ++++ +++++++  +++++++++++++++++++++++++++++++
  CCE30733.1 621 MGLLEEDLSHIGSFPWMQQHQYQQNQQQQLLQHQQHQQHQQHQQHQQHQQHQQQHQHQHQHQ 682
                 79999999999999998888887776666655555555555554444444433333333222 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  24.3   0.00082       2.9     174     224 ..     633     683 ..     527     687 .] 0.44

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00082
       TFIIA 174 svaalqaq..sqqaqalaepqqqlekqqqqqqqqqqqqqqq.qvqqqqqeesqq 224
                 s + +q++  +q++q++ ++ qq   +qq+qq+qq+qq+qq q+q q+q+++q+
  CCE30733.1 633 SFPWMQQHqyQQNQQQQLLQHQQ---HQQHQQHQQHQQHQQhQQQHQHQHQHQH 683
                 33333333111111111111111...1111222222222221222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3238  (0.180601); expected 358.6 (0.02)
Passed bias filter:                      797  (0.0444531); expected 358.6 (0.02)
Passed Vit filter:                       175  (0.00976072); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.49
# Mc/sec: 4174.50
//
Query:       CCE30734.1  [L=163]
Description: uncharacterized protein CPUR_04583 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-07   29.5   3.2    9.9e-07   28.9   3.2    1.3  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
    0.00052   20.3   1.0    0.00087   19.6   1.0    1.4  1  zf-met       Zinc-finger of C2H2 type
  ------ inclusion threshold ------
      0.043   14.7   0.4      0.091   13.6   0.4    1.6  1  zf-C2H2_4    C2H2-type zinc finger
      0.049   14.1   0.9      0.087   13.3   0.9    1.4  1  zf-C2H2      Zinc finger, C2H2 type
      0.079   13.3   0.7       0.12   12.8   0.7    1.2  1  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
       0.39   10.9   2.9       0.66   10.1   2.9    1.3  1  zf-DBF       DBF zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   3.2   3.3e-10   9.9e-07       2      27 .]      23      50 ..      22      50 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.3e-10
                 CBBTTTTBBBSSHHHHHCCTTS..HHHH CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHlkS..KkHK 27
                 fYC lC+K ++ +n++++Hl+S  ++HK
   CCE30734.1 23 FYCSLCSKGYSRMNDYEAHLSSydHSHK 50
                 9*********************999998 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   1.0   2.9e-07   0.00087       1      22 [.      23      44 ..      23      44 .. 0.97

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.9e-07
      zf-met  1 fyCelCnvtfnsesqlksHlqG 22
                fyC+lC + ++  +++++Hl +
  CCE30734.1 23 FYCSLCSKGYSRMNDYEAHLSS 44
                8*******************87 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   3.1e-05     0.091       1      21 [.      23      43 ..      23      45 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.1e-05
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlk 21
                f+C++C+k +s+ +++  Hl 
  CCE30734.1 23 FYCSLCSKGYSRMNDYEAHLS 43
                89*****************86 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.9   2.9e-05     0.087       1      23 []      23      47 ..      23      47 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.9e-05
                EEETTTTEEESSHHHHHHHHHC..C CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirt..H 23
                ++C+ C+k ++r  ++++H+++  H
  CCE30734.1 23 FYCSLCSKGYSRMNDYEAHLSSydH 47
                89*****************987555 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.7   3.9e-05      0.12      47      78 ..      19      50 ..      11      62 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
   zf-C2H2_2 47 ieekleClyCekefkslealreHmkkkgHcki 78
                 ++++ C +C+k  + ++++++H+++ +H   
  CCE30734.1 19 AQKSFYCSLCSKGYSRMNDYEAHLSSYDHSHK 50
                456799*******************9999764 PP

>> zf-DBF  DBF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.9   0.00022      0.66       1      26 [.      20      48 ..      20      51 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
      zf-DBF  1 kksGYCEnCrvkf...edleeHlksekHr 26
                +ks YC  C++ +   +d+e Hl s  H 
  CCE30734.1 20 QKSFYCSLCSKGYsrmNDYEAHLSSYDHS 48
                5899*********4445899*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1144.51
//
Query:       CCE30735.1  [L=356]
Description: uncharacterized protein CPUR_04584 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-41  138.8   8.0      6e-33  113.8   4.3    2.1  2  DUF1691   Protein of unknown function (DUF1691)


Domain annotation for each model (and alignments):
>> DUF1691  Protein of unknown function (DUF1691)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   3.5e-10   6.3e-06       2      72 ..     107     173 ..     106     213 .. 0.83
   2 !  113.8   4.3   3.3e-37     6e-33       3     106 ..     222     337 ..     220     338 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.5e-10
     DUF1691   2 llglHvlvnrivPllv.gdsskvgllyvahglarspplslleyaaLvgsgvlHivsGlakwlgllrilkkik 72 
                 + +lH++++ ++P++     s++ +l + +++++   +   e +++   ++ Hi sG+a  l llr +++++
  CCE30735.1 107 FTALHLTNVSLIPAVTrSVPSSETFLLMTREIYQTSLS---EPIIVFLPVLTHIGSGIA--LRLLRRWQNMQ 173
                 889*************8899999*********998888...999999************..44444444442 PP

  == domain 2  score: 113.8 bits;  conditional E-value: 3.3e-37
     DUF1691   3 lglHvlvnrivPllv.gdsskvgllyvahglarspplslleyaaLvgsgvlHivsGlakwlgllrilkki...........kkkkrrrrwliingiaaa 89 
                 +++Hv++nr++Pl v gdss++gl+yvahg+ar+p +s+++y aL+g++++H+v+G+akwlg++   +++           ++++r+ rw+ ++g+++ 
  CCE30735.1 222 YAAHVFMNRVLPLAVeGDSSNIGLAYVAHGFARHPLTSYVAYLALLGTASGHMVWGMAKWLGWAPSTNSWrgkegvvadkkTRRTRQLRWFGVHGVSIG 320
                 589*************************************************************6666666667777776778888889********** PP

     DUF1691  90 kaalglaGglgvvkrgg 106
                 +aal+++Gglgvv+rgg
  CCE30735.1 321 VAALWAVGGLGVVARGG 337
                 ***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2766.23
//
Query:       CCE30736.1  [L=226]
Description: related to glycinamide ribonucleotide transformylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-34  119.4   0.0    1.7e-34  119.1   0.0    1.1  1  Formyl_trans_N  Formyl transferase


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0   9.6e-39   1.7e-34       2     180 ..      10     212 ..       9     213 .. 0.91

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 9.6e-39
                     EEEEEESESSHHHHHHHHHHHHTTSE.CEEEEEEESCTTEHCHHHHHHCCHCCCECHHCC..............SCCCCCCCHHHHHHH...HCT CS
  Formyl_trans_N   2 kivvlisgtgsnlqalldalkkgsle.advvlvvsnkdkaaglekaeaasiptkvfeekk..............leprsqfeeelaeel...kel 78 
                     +i+v++sg gsn+qal+da+++g l    ++++++n+ +a  + +ae+a+ip  +f+  +              +e r+ ++ +la+++   + +
      CCE30736.1  10 RILVMASGFGSNFQALIDAASTGRLPnSRIISLITNRRNAHAIVRAEKAGIPWDYFNLISngflrkgeadekiiAEGRRSYDAALAAQIlspQRE 104
                     8************************989*****************************99999************999999999999988444678 PP

                     T-SEEEEES--S---HHHH...HSSTTSEEEEESSSTTTTBSS-HHHHHH...HTTSSE.EEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHH CS
  Formyl_trans_N  79 kadlivlagymkllpkelv...qavrlkilniHpSLLPrfkGaaaiqral...eaGdke.tGvtihfvdeelDtGailaqkkveiiaedtkeele 166
                      ++li+lag+m + +++++   ++  ++i+niHp+L+++f+Ga ai+ra+   +aG    tG++ h+v +e+D G++++++++e  + + +eel+
      CCE30736.1 105 TPELIILAGWMYIFSSAFLeplEKAGVRIINIHPALPGEFDGAMAIERAFdelKAGRMTrTGIMAHYVIDEVDRGEPILVQEIEW-KGEGLEELK 198
                     9*****************955567789**********************72214565436***********************95.6899***** PP

                     HHHHHHHHHHHHHH CS
  Formyl_trans_N 167 qrvadaehkalvea 180
                     +r++  eh+++v+a
      CCE30736.1 199 ERIHVHEHQLIVKA 212
                     ***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1821.94
//
Query:       CCE30737.1  [L=688]
Description: uncharacterized protein CPUR_04586 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-10   39.6   0.2    8.3e-10   38.4   0.2    1.5  1  F-box-like  F-box-like
    4.4e-09   36.0   0.3      1e-08   34.8   0.3    1.7  1  F-box       F-box domain
  ------ inclusion threshold ------
        0.1   12.5   0.0       0.22   11.4   0.0    1.5  1  F-box_4     F-box


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.2   1.4e-13   8.3e-10       6      43 ..      61      97 ..      57     101 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.4e-13
  F-box-like  6 dEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWr 43
                dE+L++IFs+L+ ++Ll+++ VCrr++r+a+d   LWr
  CCE30737.1 61 DELLMRIFSFLDEKTLLAISPVCRRFNRIASDS-HLWR 97
                8*****************************999.***9 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.3   1.7e-12     1e-08       5      46 ..      58      99 ..      55     101 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.7e-12
                HS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH CS
       F-box  5 rLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwcks 46
                +L++e+l+ I+++L+ ++lla++ V+++++++  +  lw+ +
  CCE30737.1 58 DLSDELLMRIFSFLDEKTLLAISPVCRRFNRIASDSHLWRPH 99
                8**************************************865 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.7e-05      0.22       6      40 ..      57      91 ..      53      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.7e-05
     F-box_4  6 ssLPlevlqhiaslLDsfsLsqLslvskllrevcs 40
                ++L  e+l +i s+LD+ +L+ +s v++++  ++s
  CCE30737.1 57 TDLSDELLMRIFSFLDEKTLLAISPVCRRFNRIAS 91
                57889************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 5378.51
//
Query:       CCE30738.1  [L=462]
Description: uncharacterized protein CPUR_04587 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-13   48.8   0.0    1.4e-11   44.6   0.0    2.2  2  SWIRM     SWIRM domain


Domain annotation for each model (and alignments):
>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.018   3.1e+02      34      62 ..     240     268 ..     207     280 .. 0.82
   2 !   44.6   0.0   7.5e-16   1.4e-11       9      88 ..     383     454 ..     378     455 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.018
       SWIRM  34 lkiRnkiialyrenpkeyltvteaqkalk 62 
                 l+ R ++++ y+ + k +l+++ a   + 
  CCE30738.1 240 LTFRSQVMKHYTADRKGWLRKERALLEAD 268
                 7889******************9955444 PP

  == domain 2  score: 44.6 bits;  conditional E-value: 7.5e-16
       SWIRM   9 dslhpiEkellselfngkdktpeeYlkiRnkiialyrenp..keyltvteaqkalkrrrltgidvnllsrihefLerwGlIN 88 
                 + lhp+E  l+  l+     ++++Yl+++++i++++ ++    +++++t+aq+a+k      idvn++s+++++++++G+++
  CCE30738.1 383 SLLHPDEIVLAGILR----LDCATYLTSKRRIFERRLQCYrtGKEFRKTDAQQACK------IDVNKASKLWTAFDKVGWLD 454
                 789****88888888....******************98766888***********......9*****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3504.37
//
Query:       CCE30739.1  [L=1152]
Description: related to vesicular transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-15   56.3   0.1    5.5e-15   55.0   0.1    1.7  1  GRIP            GRIP domain
    0.00085   19.4  20.1    0.00085   19.4  20.1   12.6 12  DHR10           Designed helical repeat protein 10 domain
    0.00093   19.6  15.3    0.00093   19.6  15.3   10.6  9  DUF4200         Domain of unknown function (DUF4200)
     0.0024   17.7   4.5     0.0024   17.7   4.5   11.1 11  Phage_GP20      Phage minor structural protein GP20
     0.0067   16.5   1.9     0.0067   16.5   1.9   12.5 10  TolA_bind_tri   TolA binding protein trimerisation
      0.007   16.2  25.6      0.007   16.2  25.6    7.0  4  KASH_CCD        Coiled-coil region of CCDC155 or KASH
  ------ inclusion threshold ------
      0.015   14.6 154.4      0.052   12.9  14.2    9.1  9  GAS             Growth-arrest specific micro-tubule binding
      0.018   14.8   1.0      0.018   14.8   1.0    9.5  8  DUF4201         Domain of unknown function (DUF4201)
      0.063   13.9   0.0         27    5.4   0.0    4.5  1  DUF3800         Protein of unknown function (DUF3800)
      0.069   12.0 158.3      0.058   12.3   4.9    8.3  9  Spc7            Spc7 kinetochore protein
      0.086   12.9 155.1      0.017   15.1  20.2    8.9  8  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
       0.21   11.5   0.0       0.21   11.5   0.0    5.8  6  Pox_A_type_inc  Viral A-type inclusion protein repeat
       0.22   11.0 135.8        2.2    7.8  57.9    8.8  5  Filament        Intermediate filament protein
        1.1    9.6 148.9      0.093   13.2   4.5    8.2  8  Fez1            Fez1
        1.3    9.5 184.0       0.99    9.9   7.0   11.5 11  APG6_N          Apg6 coiled-coil region
        3.5    7.0 141.5       0.32   10.4  21.9    6.9  6  Golgin_A5       Golgin subfamily A member 5


Domain annotation for each model (and alignments):
>> GRIP  GRIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   4.9e-18   5.5e-15       4      44 .]    1102    1142 ..    1100    1142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 4.9e-18
        GRIP    4 leYLKNVllqFLeskeaserkqLvpVlstlLkfspeEeqkl 44  
                  + YLK++llqFLe+k+a  r qLvpVl+ lLkf++++eqk+
  CCE30739.1 1102 TMYLKTILLQFLEQKDARLRAQLVPVLGKLLKFDRSDEQKW 1142
                  79**************************************8 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1  10.0       0.7   7.8e+02      61     110 ..     224     273 ..     165     275 .. 0.84
   2 !    6.6  23.1    0.0067       7.5       2     111 ..     337     443 ..     336     449 .. 0.87
   3 ?    1.6   0.3      0.25   2.8e+02      55      88 ..     461     494 ..     450     496 .. 0.83
   4 ?   -0.2   9.2      0.91     1e+03      45      87 ..     580     622 ..     577     638 .. 0.73
   5 ?    5.8   9.3     0.012        14      29      92 ..     637     700 ..     630     705 .. 0.91
   6 !   19.4  20.1   7.6e-07   0.00085       2     106 ..     672     780 ..     671     794 .. 0.87
   7 ?   -2.6   3.3       4.8   5.3e+03      56      90 ..     772     806 ..     768     812 .. 0.62
   8 !    6.4   9.9    0.0079       8.8      50      95 ..     815     860 ..     809     868 .. 0.92
   9 ?    0.3  11.4       0.6   6.8e+02      53     115 ..     881     943 ..     864     945 .. 0.82
  10 ?   -2.8  15.6       5.8   6.5e+03      51     115 ..     939    1003 ..     927    1005 .. 0.50
  11 ?    1.5  21.6      0.27     3e+02       4     103 ..     965    1065 ..     962    1076 .. 0.88
  12 ?   -0.0   0.1      0.79   8.8e+02      71     113 ..    1108    1150 ..    1096    1150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.7
       DHR10  61 elrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaaka 110
                   +++l++ ++++ el++k+++ + +l +  e+le l+ ++++   +ak+
  CCE30739.1 224 MVMEELKKVSADKDELKKKHDQSEEKLRQTLEQLETLQSSQSATSVDAKN 273
                 56789999999999999999999999999999999999999888777765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0067
       DHR10   2 eslaeekeelaelErkarelqakidalqvvekdlrsciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreq 100
                 +++a++  e+++l  k  +lq+ + a q+  +   s+ + le++ ++l + ++ak   + l+++l++++ e + l+++ +  q ql++ ee+ ++ +++
  CCE30739.1 337 AEVASKTGEVQQLKGKVEDLQKELSAAQENST---SLAENLEKATKQLSESRDAKGSQETLQKQLDQRNSEIKTLSARLDSAQSQLKKVEEQAAKDKQE 432
                 57888888999999999999999998887776...556899999999999999999999***********************************99999 PP

       DHR10 101 aeekreaakar 111
                 +  k ++ +++
  CCE30739.1 433 HVSKIKDVDTK 443
                 99988777666 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.25
       DHR10  55 akkklkelrdaleekeielrelerkeerlqrqle 88 
                 +kk +++l++++e +++e+++  +k++ l+++++
  CCE30739.1 461 SKKLIDDLSQQIEGLKKEKSDSLAKIDELTKKID 494
                 6788899999999999999999999999999875 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.91
       DHR10  45 ieaelakleeakkklkelrdaleekeielrelerkeerlqrql 87 
                 +e+e+akl+++ ++ ++  ++l++k++  ++l  ++e lq  l
  CCE30739.1 580 LESEIAKLRTEVETKDREIEKLSKKRKSEEDLREEIENLQENL 622
                 5777777777777777777777777777777777777777766 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.012
       DHR10  29 qvvekdlrsciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaee 92 
                 + +e++ +++ k++ e+++++a+ +++  + ++++  l+e+++e  +l+ k + lq  l  a++
  CCE30739.1 637 KGLEQEKEHLEKQIVELQTQIASSQSEATHSSKTQSDLDELQKEYDDLKGKSATLQSDLGAAQQ 700
                 56899999999*********************************************99988875 PP

  == domain 6  score: 19.4 bits;  conditional E-value: 7.6e-07
       DHR10   2 eslaeekeelaelErkarelqakidalqvve....kdlrsciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeekler 96 
                 ++l+e ++e ++l  k+  lq  + a q++     kdl  + ++l+ ++ el++l+e ++ lk++rd+l+ k++el+ +e+ke+ l+r l++a++  + 
  CCE30739.1 672 SDLDELQKEYDDLKGKSATLQSDLGAAQQLAqtryKDLTDLRAVLQSAQPELKSLREDSAALKKARDELSAKTKELKGMEKKETDLKRDLSKAQQVSSD 770
                 7899999********************999844446*********************************************************987666 PP

       DHR10  97 lreqaeekre 106
                  +++ ++ +e
  CCE30739.1 771 REREIKTLQE 780
                 6665555444 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 4.8
       DHR10  56 kkklkelrdaleekeielrelerkeerlqrqlena 90 
                 ++++k l+++l+  +++++  e  ++  ++ l +a
  CCE30739.1 772 EREIKTLQERLKAESTNKQRAEEGKRTTEKDLRRA 806
                 45666666666666666666666666666666555 PP

  == domain 8  score: 6.4 bits;  conditional E-value: 0.0079
       DHR10  50 akleeakkklkelrdaleekeielrelerkeerlqrqlenaeekle 95 
                 ak e+++++l++++d+l++++ ++++le + + l+r  +  +e+ e
  CCE30739.1 815 AKAEKTERELQKAHDELNKLRPRVKDLEEQMHKLRRDKAASQEEAE 860
                 799**********************************999999876 PP

  == domain 9  score: 0.3 bits;  conditional E-value: 0.6
       DHR10  53 eeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaakarleel 115
                  e + +lke + + e++e+el+e++r  +  +r  e +++ l+ +  +a+ k +++++r+e++
  CCE30739.1 881 TELSIQLKESKSQAESLEEELSEVQRLLQERTREGETMRRLLADVDSRADIKVREMRTRMESA 943
                 555668899999999999999999999999999999999999999999999999999999876 PP

  == domain 10  score: -2.8 bits;  conditional E-value: 5.8
       DHR10   51 kleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaakarleel 115 
                  ++e+a ++ ++l+d+ +++ ++++  + + ++  r le+  + l++ r + ee+++++k+r +el
  CCE30739.1  939 RMESAIEERERLEDESSTLARRKSRETEQLKHTLRELEQQVKSLTHERDDLEERQREWKRRRDEL 1003
                  33444444444444444444444444445555555555555555555555555555555555555 PP

  == domain 11  score: 1.5 bits;  conditional E-value: 0.27
       DHR10    4 laeekeelaelErkarelqakidalqvvekdlrsciklleeieaelakleea.kkklkelrdaleekeielrelerkeerlqrqlenaeeklerlre 99  
                   ++ k +l elE++ + l++  d l++ +++ ++  + le ie++  ++ e+ ++++++lr al++ e +lre e+++  l+  l+  + ++e++ +
  CCE30739.1  965 TEQLKHTLRELEQQVKSLTHERDDLEERQREWKRRRDELEAIESKASAETEEmRSTVSQLRTALDTSEMQLREGEKQRGDLRTMLDDSRARYEKVAR 1061
                  678899*************************************99876655515689************************************9887 PP

       DHR10  100 qaee 103 
                  + ++
  CCE30739.1 1062 ELKT 1065
                  6554 PP

  == domain 12  score: -0.0 bits;  conditional E-value: 0.79
       DHR10   71 ielrelerkeerlqrqlenaeeklerlreqaeekreaakarle 113 
                  i l+ le+k +rl+ ql     kl +  ++ e+k + a + +e
  CCE30739.1 1108 ILLQFLEQKDARLRAQLVPVLGKLLKFDRSDEQKWATAVQHME 1150
                  5567799***************************999999886 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       6.2   6.9e+03      28      40 ..     157     169 ..     141     198 .. 0.59
   2 ?    3.0   2.3      0.11   1.3e+02      69      94 ..     237     262 ..     215     274 .. 0.59
   3 ?    4.4   1.5     0.043        48      76     103 ..     340     367 ..     326     380 .. 0.68
   4 !   19.6  15.3   8.3e-07   0.00093       8     107 ..     391     490 ..     386     492 .. 0.95
   5 ?    4.1   1.9     0.052        58      76     102 ..     578     604 ..     568     607 .. 0.87
   6 ?    3.2  20.1       0.1   1.1e+02      12     105 ..     581     676 ..     577     685 .. 0.79
   7 ?   -1.5   8.1       2.8   3.2e+03      29     103 ..     677     754 ..     669     759 .. 0.64
   8 !    8.6  19.6    0.0021       2.4       5     102 ..     919    1016 ..     916    1020 .. 0.94
   9 !    7.2  10.3    0.0057       6.4       3      92 ..     984    1073 ..     982    1085 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.2
     DUF4200  28 alkqreeelekke 40 
                 ++kqr ++lek e
  CCE30739.1 157 EIKQRLRKLEKLE 169
                 2333333333332 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.11
     DUF4200  69 eeerklkkekeaeikklkaeietlks 94 
                 +e +k++++ e+++++  +++etl+s
  CCE30739.1 237 DELKKKHDQSEEKLRQTLEQLETLQS 262
                 23344444555555555555555554 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.043
     DUF4200  76 kekeaeikklkaeietlkseiekleekl 103
                  +k+ e+++lk ++e+l++e++  +e+ 
  CCE30739.1 340 ASKTGEVQQLKGKVEDLQKELSAAQENS 367
                 4566677777777777777777666654 PP

  == domain 4  score: 19.6 bits;  conditional E-value: 8.3e-07
     DUF4200   8 mfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleey 106
                 ++ +q++l++ + ei++l  +l++++ +l+k e++  +d ++    +k+ d k+a+   k  + + +    ++ i +l ++ie lk+e++   +k++e+
  CCE30739.1 391 QETLQKQLDQRNSEIKTLSARLDSAQSQLKKVEEQAAKDKQEHVSKIKDVDTKSADLDAKLTKANSAASISKKLIDDLSQQIEGLKKEKSDSLAKIDEL 489
                 5679**************************************************************************************999999887 PP

     DUF4200 107 k 107
                  
  CCE30739.1 490 T 490
                 5 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.052
     DUF4200  76 kekeaeikklkaeietlkseiekleek 102
                    e+ei+kl++e+et   eiekl +k
  CCE30739.1 578 AALESEIAKLRTEVETKDREIEKLSKK 604
                 66899*******************998 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.1
     DUF4200  12 qealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseie...kleeklee 105
                 + ++++ + e +++ +++++  ++ +k+e+ l+e+++++++ l  + +  ++a ++++  +++k++ e++i +l+++i+  +se +   k++  l+e
  CCE30739.1 581 ESEIAKLRTEVETKDREIEKLSKK-RKSEEDLREEIENLQENLLTIGQDHVEAKERIKGLEQEKEHLEKQIVELQTQIASSQSEAThssKTQSDLDE 676
                 567777777777777777766555.78899****************************************************765411144444444 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 2.8
     DUF4200  29 lkqreeelekkeqeleedllkfdkflkendakra...ralkkaeeerklkkekeaeikklkaeietlkseiekleekl 103
                 l+++ ++l+ k + l+ dl   ++  +   +  +     l+ a+ e k  +e  a +kk+++e+++  +e++ +e+k 
  CCE30739.1 677 LQKEYDDLKGKSATLQSDLGAAQQLAQTRYKDLTdlrAVLQSAQPELKSLREDSAALKKARDELSAKTKELKGMEKKE 754
                 566666666666666666666666666655544311034677777888888888888888888888888888888775 PP

  == domain 8  score: 8.6 bits;  conditional E-value: 0.0021
     DUF4200    5 kremfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseieklee 101 
                  +r + +v+   + k  e+++++e++ +++e le++ + l ++  + ++ lk+  ++ ++  k    er+  +e+++e k+ ++e+e+++s+ +   e
  CCE30739.1  919 RRLLADVDSRADIKVREMRTRMESAIEERERLEDESSTLARRKSRETEQLKHTLRELEQQVKSLTHERDDLEERQREWKRRRDELEAIESKASAETE 1015
                  78889999999******************************************************************************99887766 PP

     DUF4200  102 k 102 
                  +
  CCE30739.1 1016 E 1016
                  6 PP

  == domain 9  score: 7.2 bits;  conditional E-value: 0.0057
     DUF4200    3 ekkremfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietl 92  
                  +++ +++e q++ ++ ++e++ +e +++ + ee++ + ++l+  l   +  l+e +++r + +   ++ r + ++ ++e+k ++++++t 
  CCE30739.1  984 HERDDLEERQREWKRRRDELEAIESKASAETEEMRSTVSQLRTALDTSEMQLREGEKQRGDLRTMLDDSRARYEKVARELKTAQSKLTTA 1073
                  5688999*****************************************************************************999876 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       2.3   2.6e+03      47      74 ..     147     174 ..     125     189 .. 0.78
   2 ?    5.3   2.2     0.014        16      40      72 ..     225     257 ..     213     278 .. 0.70
   3 ?    4.0   4.7     0.035        39      23      79 ..     328     381 ..     318     388 .. 0.64
   4 !    8.5  23.2    0.0015       1.7      21     125 ..     385     491 ..     377     496 .. 0.83
   5 !   17.7   4.5   2.1e-06    0.0024      13      65 ..     569     622 ..     558     630 .. 0.89
   6 !    8.8   7.8    0.0012       1.3      15      71 ..     630     687 ..     623     702 .. 0.86
   7 ?    1.8  16.2      0.17   1.9e+02      17     126 ..     671     784 ..     670     790 .. 0.89
   8 ?    0.1  10.4      0.57   6.4e+02       9      77 ..     792     864 ..     785     879 .. 0.68
   9 ?    0.2   1.4      0.52   5.8e+02      25      57 ..     878     910 ..     869     948 .. 0.53
  10 ?    4.4   6.0     0.027        30      25      91 ..     963    1030 ..     951    1034 .. 0.82
  11 ?    3.2   0.7     0.062        70      19      77 ..    1013    1071 ..    1010    1078 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.3
  Phage_GP20  47 kakdneeLqkqieelqaknkkakaeyea 74 
                 +a +n+eL  +i++   k++k +a+y +
  CCE30739.1 147 QAANNTELSPEIKQRLRKLEKLEATYPE 174
                 5667778888888887777777777755 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.014
  Phage_GP20  40 qLedLkkkakdneeLqkqieelqaknkkakaey 72 
                  +e+Lkk++ d +eL+k+ ++ ++k+ +  ++ 
  CCE30739.1 225 VMEELKKVSADKDELKKKHDQSEEKLRQTLEQL 257
                 467777777777777777777777776644433 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.035
  Phage_GP20  23 veeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadl 79 
                 ++ee   l+ +++ + +++++Lk+k   +e+Lqk++   q++     ++ e+  ++l
  CCE30739.1 328 YDEEIPHLQAEVASKTGEVQQLKGK---VEDLQKELSAAQENSTSLAENLEKATKQL 381
                 5556666666666777777777666...66677777666666666666666655554 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0015
  Phage_GP20  21 deveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlkldna.ielaLkeakaknekavkalld.....kdklklke 113
                  +++  ++tl++ql++r++++++L +     ++ q q+++++++++k k+e+ +ki+d++  +a ++  L++a+   +++ k+l+d     ++ lk ++
  CCE30739.1 385 RDAKGSQETLQKQLDQRNSEIKTLSAR---LDSAQSQLKKVEEQAAKDKQEHVSKIKDVDTKSAdLDAKLTKANS-AASISKKLIDdlsqqIEGLKKEK 479
                 5688999*****************877...9999************************98655539999999875.57899999997777777777777 PP

  Phage_GP20 114 dgelkgLdeqik 125
                   +l  +de  k
  CCE30739.1 480 SDSLAKIDELTK 491
                 777777777655 PP

  == domain 5  score: 17.7 bits;  conditional E-value: 2.1e-06
  Phage_GP20  13 kdit.kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqakn 65 
                  ++t  ++ + +e+e  +l ++++++d ++e+L kk k  e+L ++ie+lq+++
  CCE30739.1 569 AIVTgSTSNAALESEIAKLRTEVETKDREIEKLSKKRKSEEDLREEIENLQENL 622
                 567777888999***************************************986 PP

  == domain 6  score: 8.8 bits;  conditional E-value: 0.0012
  Phage_GP20  15 it.kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakae 71 
                 +  k++++ +e+e++ l++q+ + ++q+   + +a  + + q +++elq+++++ k +
  CCE30739.1 630 VEaKERIKGLEQEKEHLEKQIVELQTQIASSQSEATHSSKTQSDLDELQKEYDDLKGK 687
                 54599*********************************************99986644 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.17
  Phage_GP20  17 kakldeveeerdtlkeqlkdrdkqLedLk....kkakdneeLqkqieelqaknkkakaeyeakiadlkldnaielaLkeakaknekavkalldkdklkl 111
                 +++lde+++e d+lk++ ++ +++L   +    + +kd ++L + +++ q ++k   ++++a  ++++  +a +++Lk+ + k++++ + l   ++++ 
  CCE30739.1 671 QSDLDELQKEYDDLKGKSATLQSDLGAAQqlaqTRYKDLTDLRAVLQSAQPELKSLREDSAALKKARDELSAKTKELKGMEKKETDLKRDLSKAQQVSS 769
                 5788999999999999999999999765411115679************************************************************** PP

  Phage_GP20 112 kedgelkgLdeqikk 126
                 + + e+k+L+e +k+
  CCE30739.1 770 DREREIKTLQERLKA 784
                 ***********9985 PP

  == domain 8  score: 0.1 bits;  conditional E-value: 0.57
  Phage_GP20   9 aengkditkakldeveeerdtlkeqlkdrdkqL....edLkkkakdneeLqkqieelqaknkkakaeyeakia 77 
                 ae+gk  t+++l ++e+++ ++  + ++ + +L    ++L k    +++L++q+ +l  + +++++e+e k +
  CCE30739.1 792 AEEGKRTTEKDLRRAEADKIEWSAKAEKTERELqkahDELNKLRPRVKDLEEQMHKLRRDKAASQEEAEFKSQ 864
                 7788888888888888888888877777777663333456666667777777887777777766666554444 PP

  == domain 9  score: 0.2 bits;  conditional E-value: 0.52
  Phage_GP20  25 eerdtlkeqlkdrdkqLedLkkkakdneeLqkq 57 
                 ++ ++l  qlk+  +q e L+++  +++ L ++
  CCE30739.1 878 DQATELSIQLKESKSQAESLEEELSEVQRLLQE 910
                 444555555555555555555554444444333 PP

  == domain 10  score: 4.4 bits;  conditional E-value: 0.027
  Phage_GP20   25 eerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlk.ldnaielaLke 91  
                   e ++lk +l + ++q++ L  +  d ee q++ +    ++++ ++++ a+ +++    + +++aL++
  CCE30739.1  963 RETEQLKHTLRELEQQVKSLTHERDDLEERQREWKRRRDELEAIESKASAETEEMRsTVSQLRTALDT 1030
                  68899999999999999999999999999999999999999999999999988875134566666655 PP

  == domain 11  score: 3.2 bits;  conditional E-value: 0.062
  Phage_GP20   19 kldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakia 77  
                  +++e+ + + +l + l++ + qL + +k+ +d  ++  +     +k++++ +++++k++
  CCE30739.1 1013 ETEEMRSTVSQLRTALDTSEMQLREGEKQRGDLRTMLDDSRARYEKVARELKTAQSKLT 1071
                  66777788888888888888888888888777777777666666666666666666665 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.7      0.76   8.5e+02      29      70 ..     224     265 ..     205     271 .. 0.68
   2 !   16.5   1.9     6e-06    0.0067      23      74 ..     335     386 ..     328     388 .. 0.92
   3 !    7.7   7.1    0.0032       3.6       8      55 ..     380     426 ..     373     433 .. 0.82
   4 ?    2.7   0.0      0.12   1.4e+02      19      71 ..     464     495 ..     446     500 .. 0.55
   5 !    8.3   0.8    0.0021       2.4      28      56 ..     578     606 ..     564     627 .. 0.84
   6 ?    5.0   1.9     0.023        26       3      33 ..     633     663 ..     631     666 .. 0.93
   7 !    9.4  10.1   0.00095       1.1       2      74 ..     646     721 ..     645     723 .. 0.90
   8 ?   -0.3   3.4         1   1.1e+03       7      38 ..     818     849 ..     813     870 .. 0.72
   9 ?    4.9  10.1     0.024        27      10      61 ..     948     999 ..     939    1014 .. 0.78
  10 ?    3.6   2.0     0.063        70      26      71 ..    1013    1058 ..    1008    1062 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.76
  TolA_bind_tri  29 alqqelreLRGqiEelqyqleqleerQrdlYldlDerlrkle 70 
                       +el++   + +el+ + +q ee+ r+  ++l+++ ++ +
     CCE30739.1 224 MVMEELKKVSADKDELKKKHDQSEEKLRQTLEQLETLQSSQS 265
                    555666666666777777777777777777777777666555 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 6e-06
  TolA_bind_tri  23 lqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrkleagga 74 
                    lq ++ +   e+++L+G++E+lq +l+ ++e    l ++l++  ++l++++ 
     CCE30739.1 335 LQAEVASKTGEVQQLKGKVEDLQKELSAAQENSTSLAENLEKATKQLSESRD 386
                    899999999***********************************99998875 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0032
  TolA_bind_tri   8 rLErilearsqlllelqqqlealqqelreLRGqiEelqyqleqleerQ 55 
                    +L +  +a + ++  lq+ql++ ++e+++L   ++  q ql+++ee+ 
     CCE30739.1 380 QLSESRDA-KGSQETLQKQLDQRNSEIKTLSARLDSAQSQLKKVEEQA 426
                    44444444.378889******************************995 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.12
  TolA_bind_tri  19 lllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrklea 71 
                    l+ +l                     + q+e l++   d   ++De+ +k+ +
     CCE30739.1 464 LIDDL---------------------SQQIEGLKKEKSDSLAKIDELTKKIDT 495
                    44455.....................555555555555555555555555555 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0021
  TolA_bind_tri  28 ealqqelreLRGqiEelqyqleqleerQr 56 
                     al++e+++LR ++E    ++e+l ++ +
     CCE30739.1 578 AALESEIAKLRTEVETKDREIEKLSKKRK 606
                    689*********************98876 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.023
  TolA_bind_tri   3 edrvarLErilearsqlllelqqqlealqqe 33 
                    ++r++ LE+  e+ ++ ++elq+q+ + q+e
     CCE30739.1 633 KERIKGLEQEKEHLEKQIVELQTQIASSQSE 663
                    68***************************99 PP

  == domain 7  score: 9.4 bits;  conditional E-value: 0.00095
  TolA_bind_tri   2 ledrvarLErilears...qlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrkleagga 74 
                    le+++ +L  ++++++       + q+ l++lq+e ++L+G+   lq +l  +++  +  Y+dl  + + l+++++
     CCE30739.1 646 LEKQIVELQTQIASSQseaTHSSKTQSDLDELQKEYDDLKGKSATLQSDLGAAQQLAQTRYKDLTDLRAVLQSAQP 721
                    7999999999999877666667899***************************************999999988775 PP

  == domain 8  score: -0.3 bits;  conditional E-value: 1
  TolA_bind_tri   7 arLErilearsqlllelqqqlealqqelreLR 38 
                    ++ Er l++    l +l  ++++l++++ +LR
     CCE30739.1 818 EKTERELQKAHDELNKLRPRVKDLEEQMHKLR 849
                    56677777777777777777777777777776 PP

  == domain 9  score: 4.9 bits;  conditional E-value: 0.024
  TolA_bind_tri  10 ErilearsqlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYld 61 
                    Er+ + +s l  +  ++ e+l++ lreL  q+  l+++ ++leerQr+  + 
     CCE30739.1 948 ERLEDESSTLARRKSRETEQLKHTLRELEQQVKSLTHERDDLEERQREWKRR 999
                    555555555666667899*****************************97555 PP

  == domain 10  score: 3.6 bits;  conditional E-value: 0.063
  TolA_bind_tri   26 qlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrklea 71  
                     + e++++ +++LR  ++  + ql++ e++  dl + lD   ++ e+
     CCE30739.1 1013 ETEEMRSTVSQLRTALDTSEMQLREGEKQRGDLRTMLDDSRARYEK 1058
                     568999*******************************998887775 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   1.7      0.06        67     107     149 ..     225     264 ..     194     276 .. 0.68
   2 !   11.6  22.9   0.00016      0.18      17     139 ..     346     479 ..     333     495 .. 0.81
   3 !   16.2  25.6   6.2e-06     0.007      27     182 ..     566     731 ..     561     735 .. 0.76
   4 ?    2.3  16.3      0.11   1.3e+02      65     183 ..     677     810 ..     677     815 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.06
    KASH_CCD 107 LqeenikllaekdelkkklkeLlkekaeLkkqlheleellaek 149
                   ee++k+ a+kdelkkk  +   ++++L++ l +le+l +++
  CCE30739.1 225 VMEELKKVSADKDELKKKHDQ---SEEKLRQTLEQLETLQSSQ 264
                 447777777777777776653...4445677776666666655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00016
    KASH_CCD  17 NkkLaeenskLkkavetaeetnakLteeieeLkkklkstQqalqka....klleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakie...... 105
                  ++L+++++ L+k + +a+e++  L+e++e+  k+l  +  a  ++    k l++ + e+k+l  +l+  + +lk  ++q+ k++q  ++ki+      
  CCE30739.1 346 VQQLKGKVEDLQKELSAAQENSTSLAENLEKATKQLSESRDAKGSQetlqKQLDQRNSEIKTLSARLDSAQSQLKKVEEQAAKDKQEHVSKIKdvdtks 444
                 589********************************98887776655011145666667999999999*******************9999996222222 PP

    KASH_CCD 106 .sLqeenikllaekdelkkklkeLlkekaeLkkql 139
                  +L+ +++k  + ++ +kk + +L+++++ Lkk+ 
  CCE30739.1 445 aDLDAKLTKANSAASISKKLIDDLSQQIEGLKKEK 479
                 258889999999999999*********99999975 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 6.2e-06
    KASH_CCD  27 LkkavetaeetnakLteeieeLkkklkstQqalqkakl.......leeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaek 118
                 + +a+ t   +na L  ei +L++ +    + ++k          l eE+e+l++++ ++   + ++k + k le+e+++L+++i +Lq ++  +++e+
  CCE30739.1 566 IDQAIVTGSTSNAALESEIAKLRTEVETKDREIEKLSKkrkseedLREEIENLQENLLTIGQDHVEAKERIKGLEQEKEHLEKQIVELQTQIASSQSEA 664
                 5566667777899999999999999988887777655500001115555555555555555566777888899********************999997 PP

    KASH_CCD 119 ...delkkklkeLlkekaeLkkqlheleellaekealleektkqieeLkltieEyssiieeLraeks 182
                    ++ ++ l eL ke ++Lk +   l++ l+  ++l++ + k+  +L+++++  +   + Lr +  
  CCE30739.1 665 thsSKTQSDLDELQKEYDDLKGKSATLQSDLGAAQQLAQTRYKDLTDLRAVLQSAQPELKSLREDSA 731
                 2224567788999**********************************99999988877777777765 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.11
    KASH_CCD  65 leeEleelkalvkeleEkrarlkaqnk....q...lekenqsLiakiesLqeenikllaekdelkkklkeLl...kekaeLkkqlheleellaekeall 153
                 l++E ++lk    +l+     +++ ++        l    qs + +++sL e+   l+  +del  k+keL    k++ +Lk++l +++++ +++e+++
  CCE30739.1 677 LQKEYDDLKGKSATLQSDLGAAQQLAQtrykDltdLRAVLQSAQPELKSLREDSAALKKARDELSAKTKELKgmeKKETDLKRDLSKAQQVSSDREREI 775
                 567777777777666654333332222001121112223355555677777777777777777777777774222455689999999999999999765 PP

    KASH_CCD 154 ...eektkqieeLkltieEyssiie.eL.raeksr 183
                    +e+ k     k++ eE ++++e  L rae  +
  CCE30739.1 776 ktlQERLKAESTNKQRAEEGKRTTEkDLrRAEADK 810
                 22156777777778888888888886451456555 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1  10.3      0.19   2.1e+02      22     131 ..     149     259 ..     144     274 .. 0.72
   2 ?   10.0  26.5   0.00037      0.41      48     196 ..     331     482 ..     326     489 .. 0.89
   3 ?    9.7  14.4   0.00043      0.48      53     133 ..     574     654 ..     553     664 .. 0.90
   4 ?   12.9  14.2   4.6e-05     0.052      30     122 ..     610     702 ..     604     711 .. 0.64
   5 ?    7.2  17.5    0.0025       2.8      29     131 ..     682     784 ..     674     798 .. 0.73
   6 ?    0.0  22.1      0.41   4.6e+02      37     129 ..     812     908 ..     796     932 .. 0.72
   7 ?    0.4  15.7      0.31   3.5e+02      22     112 ..     867     958 ..     850     964 .. 0.55
   8 ?    9.7  15.8   0.00045       0.5      55     132 ..     932    1010 ..     916    1020 .. 0.87
   9 ?    7.6   2.1    0.0019       2.1      71     133 ..    1015    1074 ..    1007    1083 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.19
         GAS  22 rnNLelIkslKeeieelkkkeernekelseisqenkr..lkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekv 118
                 +nN el  + K+ + +l+k e+    +l  +    kr    ep +ka +e+  L   +++ e   + +++l+ r  ++ +elk+++ +++ l+++ ++ 
  CCE30739.1 149 ANNTELSPEIKQRLRKLEKLEATYPELLRSYRVAHKRatAIEPFEKALRENTPLA-SIRDPEALVEYINQLNLRGDMVMEELKKVSADKDELKKKHDQS 246
                 6777888888888888888888888887665544444115588888888888885.5778888888888888888888888888888888888888888 PP

         GAS 119 ekerdelykkfea 131
                 e++  +  ++ e+
  CCE30739.1 247 EEKLRQTLEQLET 259
                 8877776666665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00037
         GAS  48 elseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaa...iqevqqktglk 143
                 e+ ++++e  + + ++++++ +ve L+k+l   ++   sl++  ++ +++ +e +d k ++e l++++++  +e+++l+++ ++a   +++v +++   
  CCE30739.1 331 EIPHLQAEVASKTGEVQQLKGKVEDLQKELSAAQENSTSLAENLEKATKQLSESRDAKGSQETLQKQLDQRNSEIKTLSARLDSAqsqLKKVEEQAAKD 429
                 6677899999999999**************************************************************999988866677888888888 PP

         GAS 144 nllLekklkalqeelEkkeaqleevlaaanldpaalsavsekleevlesKnqe 196
                 +     k+k ++ +    +a+l+++ +aa++ ++ ++ +s+++e + ++K ++
  CCE30739.1 430 KQEHVSKIKDVDTKSADLDAKLTKANSAASISKKLIDDLSQQIEGLKKEKSDS 482
                 8888899999999999999*************9999*****999999999765 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00043
         GAS  53 sqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaai 133
                 s+ n  l+ ++ k++ eve   +++++ +k+++s + l++++++l+++l ++ ++h   ++r++ +e+e++ l+k+  +  
  CCE30739.1 574 STSNAALESEIAKLRTEVETKDREIEKLSKKRKSEEDLREEIENLQENLLTIGQDHVEAKERIKGLEQEKEHLEKQIVELQ 654
                 6789999******************************************************************99987765 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 4.6e-05
         GAS  30 slKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekveker 122
                  l+eeie+l+++     ++  e++++ k l+++ +++e+++ eL+ q++  +++     ++++ l el+ke+ dlk ++  l+  + ++++  
  CCE30739.1 610 DLREEIENLQENLLTIGQDHVEAKERIKGLEQEKEHLEKQIVELQTQIASSQSEATHSSKTQSDLDELQKEYDDLKGKSATLQSDLGAAQQLA 702
                 466777777777777777777777777777777777777777777777777777777777777777777777777766666666666665544 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.0025
         GAS  29 kslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelyk 127
                 + lK + ++l+    +++++ +   ++  +l+  L+ a+ e++ Lr++ +  +k + +l +  ++lk +ek+ +dlk +    +q  +  e+e+++l++
  CCE30739.1 682 DDLKGKSATLQSDLGAAQQLAQTRYKDLTDLRAVLQSAQPELKSLREDSAALKKARDELSAKTKELKGMEKKETDLKRDLSKAQQVSSDREREIKTLQE 780
                 567777777777777777777777777777778888888888888888888888888888888888888888888888888888888888888888888 PP

         GAS 128 kfea 131
                 + +a
  CCE30739.1 781 RLKA 784
                 7765 PP

  == domain 6  score: 0.0 bits;  conditional E-value: 0.41
         GAS  37 elkkkeernekelseisqenkrlkepLkkaeeeveeLrk....qlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkf 129
                 e  +k+e++e+el+++  e ++l+  +k +ee++ +Lr+      ++ e + q+++n++  l ++ ++ ++l+ + +  + + e++e+e  e+++  
  CCE30739.1 812 EWSAKAEKTERELQKAHDELNKLRPRVKDLEEQMHKLRRdkaaSQEEAEFKSQQYTNAQGLLASMRDQATELSIQLKESKSQAESLEEELSEVQRLL 908
                 5677888999999999999999999999999999999984322122333345666777777777777777777777777777777777777766544 PP

  == domain 7  score: 0.4 bits;  conditional E-value: 0.31
         GAS  22 rnNLelIkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyek.dkqslknlkarlkelekelkdlkwehevle 112
                 +n   l  s++++ +el  + ++ + + + +++e ++ +  L++ ++e e +r+ l++ ++    + +++++r++++ +e ++l+ e+  l 
  CCE30739.1 867 TNAQGLLASMRDQATELSIQLKESKSQAESLEEELSEVQRLLQERTREGETMRRLLADVDSrADIKVREMRTRMESAIEERERLEDESSTLA 958
                 33344555666666666666666666666666666666666666666666666666655431334555566666666666666655555554 PP

  == domain 8  score: 9.7 bits;  conditional E-value: 0.00045
         GAS   55 enkrlkepLkkaeeeveeLrkqlknyekdkq.slknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaa 132 
                  + ++++  ++ a ee+e+L+ +  +  + k+ + ++lk  l+ele+++k+l++e + le+r  + ++ rdel++   +a
  CCE30739.1  932 KVREMRTRMESAIEERERLEDESSTLARRKSrETEQLKHTLRELEQQVKSLTHERDDLEERQREWKRRRDELEAIESKA 1010
                  5689999**************99888776652799*************************************9866665 PP

  == domain 9  score: 7.6 bits;  conditional E-value: 0.0019
         GAS   71 eeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaai 133 
                  ee+r    + ++ + +l+ ++++l+e ek+  dl+   +  + r+ekv +e ++ ++k ++a 
  CCE30739.1 1015 EEMR---STVSQLRTALDTSEMQLREGEKQRGDLRTMLDDSRARYEKVARELKTAQSKLTTAA 1074
                  4444...45567788*****************************************9998876 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   1.0   1.6e-05     0.018      42     106 ..     323     387 ..     322     392 .. 0.95
   2 ?    8.4  12.2    0.0015       1.7      51     140 ..     391     477 ..     385     494 .. 0.89
   3 ?    7.3  17.1    0.0032       3.6      49     172 ..     582     692 ..     578     697 .. 0.51
   4 ?    3.6  14.9     0.042        47      59     169 ..     675     783 ..     673     791 .. 0.84
   5 ?   -2.4  22.4       2.9   3.3e+03      62     176 ..     730     846 ..     724     847 .. 0.92
   6 ?   -2.9  13.3       4.2   4.7e+03      61     139 ..     771     849 ..     769     867 .. 0.63
   7 ?    2.9   3.5      0.07        79      65     120 ..     873     928 ..     870     943 .. 0.79
   8 ?    0.1  16.7      0.53     6e+02      82     176 ..     946    1036 ..     931    1037 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
     DUF4201  42 idFeqlqienqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeer 106
                 +dF +   e+ +l+ ++++++ e+++lk k+ +  ++l+  +e+ + l+++l+++ k+l+e  + 
  CCE30739.1 323 EDFFSYDEEIPHLQAEVASKTGEVQQLKGKVEDLQKELSAAQENSTSLAENLEKATKQLSESRDA 387
                 599999*****************************************************998775 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0015
     DUF4201  51 nqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrv 140
                  ++l+k+++ rn e+k l+ +  +   +l+ + e     ++  +e+ +++k+ +++ a+l+++l+k++   +  +k  ++l+qq + l++
  CCE30739.1 391 QETLQKQLDQRNSEIKTLSARLDSAQSQLKKVEEQ---AAKDKQEHVSKIKDVDTKSADLDAKLTKANSAASISKKLIDDLSQQIEGLKK 477
                 689********************999988888776...5788889999************************************988776 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0032
     DUF4201  49 ienqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrvPaLlkDY 147
                  e+++l++++e ++ e+++l+kk           ++ +  l++e ++l+++l ++ ++  + ++++  +++e+++l+kq  +l++q +  + +a     
  CCE30739.1 582 SEIAKLRTEVETKDREIEKLSKK-----------RKSEEDLREEIENLQENLLTIGQDHVEAKERIKGLEQEKEHLEKQIVELQTQIASSQSEATHS-- 667
                 45555555555555555555444...........333345555555555555555555555555555555555555555555555555555555444.. PP

     DUF4201 148 dktkekveekrksvkkLrrkvkile 172
                  kt+++++e++k+ + L+ k   l+
  CCE30739.1 668 SKTQSDLDELQKEYDDLKGKSATLQ 692
                 5555555555555555555544444 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.042
     DUF4201  59 eernkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrvPaLlkDYdktkekveek 157
                 +e +ke   lk k+++    l   ++ +++  + l +l+  l++ + +l++lr+    +k+ rd l ++ ++lk        ++L +D  k ++   + 
  CCE30739.1 675 DELQKEYDDLKGKSATLQSDLGAAQQLAQTRYKDLTDLRAVLQSAQPELKSLREDSAALKKARDELSAKTKELKGMEKK--ETDLKRDLSKAQQVSSDR 771
                 6777788888888888888888888888888889999999999999999999999999999999999999999876665..999999999999999999 PP

     DUF4201 158 rksvkkLrrkvk 169
                 + ++k L++++k
  CCE30739.1 772 EREIKTLQERLK 783
                 999999999876 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 2.9
     DUF4201  62 nkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrvPaLl..kDYdktkekveekr 158
                 ++ Lk+ ++    + ++l+ + +k++ l++ ls++++  +++e++++ l+++l    ++++++++ ++  ++++   ++ ++      +kt+ ++++ +
  CCE30739.1 730 SAALKKARDELSAKTKELKGMEKKETDLKRDLSKAQQVSSDREREIKTLQERLKAESTNKQRAEEGKRTTEKDLRRAEADKIEwsAKAEKTERELQKAH 828
                 6779999999999********************************************************************9644447899999***** PP

     DUF4201 159 ksvkkLrrkvkilemrlk 176
                 ++++kLr +vk+le++++
  CCE30739.1 829 DELNKLRPRVKDLEEQMH 846
                 ***************987 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 4.2
     DUF4201  61 rnkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllr 139
                 r+ e+k l+++ + ++   +   e   + e+ l++++ +  e  ++ +k ++el+k++ e +klr + ++l++q + lr
  CCE30739.1 771 REREIKTLQERLKAESTNKQRAEEGKRTTEKDLRRAEADKIEWSAKAEKTERELQKAHDELNKLRPRVKDLEEQMHKLR 849
                 5666666666666666666666666666666666666666666666666666666666666666666666666655555 PP

  == domain 7  score: 2.9 bits;  conditional E-value: 0.07
     DUF4201  65 Lkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvkle 120
                 L  +++++t  + +l++ k  +  le+else +  l+e++++ + +r+ l  v  +
  CCE30739.1 873 LASMRDQATELSIQLKESKSQAESLEEELSEVQRLLQERTREGETMRRLLADVDSR 928
                 66788888888888888888888888888888888888888888888888777655 PP

  == domain 8  score: 0.1 bits;  conditional E-value: 0.53
     DUF4201   82 lkeklhmleselselk.kelkekeerlaklrkelykvklerdklrkqneklkqqggllrvPaLlkDYdktkekveekrksvkkLrrkvkilemrlk 176 
                  ++e+l   +s+l+++k  e+++++ +l++l++++ ++ +erd l++++++ k++  +   +a+     k  ++ ee+r++v +Lr+ ++  em+l+
  CCE30739.1  946 ERERLEDESSTLARRKsRETEQLKHTLRELEQQVKSLTHERDDLEERQREWKRRRDE--LEAIES---KASAETEEMRSTVSQLRTALDTSEMQLR 1036
                  56666666666655551679999999*************************999999..567876...99999999************99999987 PP

>> DUF3800  Protein of unknown function (DUF3800)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.024        27      21      21 ..     542     542 ..     139    1117 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.024
     DUF3800  21 v 21 
                 +
  CCE30739.1 542 T 542
                 0 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   8.1     0.066        74     162     263 ..     165     276 ..     147     285 .. 0.70
   2 ?   12.3   4.9   5.2e-05     0.058     205     264 ..     329     388 ..     313     391 .. 0.87
   3 ?    3.8  17.8     0.019        22     137     243 ..     391     493 ..     388     498 .. 0.76
   4 ?    9.1  20.6   0.00049      0.54     171     279 ..     579     685 ..     565     688 .. 0.66
   5 ?   11.2  15.6   0.00011      0.12     165     273 ..     670     780 ..     665     782 .. 0.71
   6 ?    5.3  24.7    0.0069       7.7     146     256 ..     745     858 ..     744     869 .. 0.90
   7 ?    3.4  19.7     0.026        29     154     259 ..     820     924 ..     813     946 .. 0.64
   8 ?    0.7  24.9      0.18     2e+02     143     261 ..     882    1004 ..     860    1009 .. 0.60
   9 ?    6.7  19.2    0.0026       2.9     153     257 ..     963    1070 ..     947    1085 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.066
        Spc7 162 eeeldellpeleeekaeleeeleklqeaaeeles...........idkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleee 249
                  e+l++ +pel + +   +++++ ++ +++ l +              e++++l  + + +++e+++ +++ +el+++ +++eek+ ++ eq ++l++ 
  CCE30739.1 165 LEKLEATYPELLRSYRVAHKRATAIEPFEKALREntplasirdpeALVEYINQLNLRGDMVMEELKKVSADKDELKKKHDQSEEKLRQTLEQLETLQSS 263
                 566777777777777777777777777666665556666664432224566677777778888888888888888888888888888888888777776 PP

        Spc7 250 iaeaervleeckgw 263
                  + a +v  +++g+
  CCE30739.1 264 QS-ATSVDAKNRGS 276
                 44.77777777765 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.2e-05
        Spc7 205 reelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgws 264
                  ee+  l+ae+++k  e+++l+ ++e+l++++++++e+ ++l e++++a + l e ++ +
  CCE30739.1 329 DEEIPHLQAEVASKTGEVQQLKGKVEDLQKELSAAQENSTSLAENLEKATKQLSESRDAK 388
                 578888999999999999999999999999999999999999999999999999998765 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.019
        Spc7 137 legLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleek 235
                 +e+L+++l+++ +++++ +++L++ +++l+++ ++  + k+e  +++++  +++++l     ++L ++ ++ +  k+ i+ ++++++ l++++ ++ +k
  CCE30739.1 391 QETLQKQLDQRNSEIKTLSARLDSAQSQLKKVEEQAAKDKQEHVSKIKDVDTKSADL----DAKLTKANSAASISKKLIDDLSQQIEGLKKEKSDSLAK 485
                 678888888888888888888888888888888888888888888888877755543....45888888888888888888888888888888888888 PP

        Spc7 236 ieelkeqk 243
                 i+el++++
  CCE30739.1 486 IDELTKKI 493
                 88887765 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00049
        Spc7 171 eleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevs 269
                 +le+e a+l+ e+e+  ++ e+l++  k e e lree+++l++++    +++ e +e+++ le++ e+l++q+ el+++ia++++    + + ++s+++
  CCE30739.1 579 ALESEIAKLRTEVETKDREIEKLSKKRKSE-EDLREEIENLQENLLTIGQDHVEAKERIKGLEQEKEHLEKQIVELQTQIASSQSEAT-HSSKTQSDLD 675
                 445555555555555555555544433333.677777777777777777777777777777777777777777777777776665554.6677888889 PP

        Spc7 270 rlkeevkale 279
                 +l++e+++l+
  CCE30739.1 676 ELQKEYDDLK 685
                 9988888886 PP

  == domain 5  score: 11.2 bits;  conditional E-value: 0.00011
        Spc7 165 ldellpeleeekaeleeeleklqe...aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekiee...lkeqkseleeeiaeaervl 257
                  ++ l+el++e+++l+ + ++lq+   aa++l++   ++L  lr  l++++ e+++++++ a l++ ++el++k +e   ++++ ++l+ ++++a++v 
  CCE30739.1 670 TQSDLDELQKEYDDLKGKSATLQSdlgAAQQLAQTRYKDLTDLRAVLQSAQPELKSLREDSAALKKARDELSAKTKElkgMEKKETDLKRDLSKAQQVS 768
                 556678888888888888888888888888899999999999999999999999888888777776666666655551115566666777777777765 PP

        Spc7 258 eeckgwsesevsrlke 273
                       +e e+++l+e
  CCE30739.1 769 S----DREREIKTLQE 780
                 5....45566666665 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.0069
        Spc7 146 enlegleedkelLekqeeeldellpeleeekaeleeeleklqe...aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelke 241
                 ++l+g+e+ ++ L+++ ++++++  + e+e ++l+e+l+ + +   +aee +  ++++L+ +  +  e +a+ e+ ++el++  ++l++l+ ++++l+e
  CCE30739.1 745 KELKGMEKKETDLKRDLSKAQQVSSDREREIKTLQERLKAESTnkqRAEEGKRTTEKDLRRAEADKIEWSAKAEKTERELQKAHDELNKLRPRVKDLEE 843
                 7899*******************************99998866555888888899******************************************** PP

        Spc7 242 qkseleeeiaeaerv 256
                 q+++l+ + a++++ 
  CCE30739.1 844 QMHKLRRDKAASQEE 858
                 ****99887766654 PP

  == domain 7  score: 3.4 bits;  conditional E-value: 0.026
        Spc7 154 dkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiae 252
                  +++L+k  +el++l p+++  +++ +++l++ ++a++e ++ ++++  +++  la+   +  e++ +l+e ++q e+lee+++e++   +e   e + 
  CCE30739.1 820 TERELQKAHDELNKLRPRVKDLEEQ-MHKLRRDKAASQEEAEFKSQQYTNAQGLLASMRDQATELSIQLKESKSQAESLEEELSEVQRLLQERTREGET 917
                 4555666666666666665544444.3334444445556666777777888888888888888888888888888888888888887777777777666 PP

        Spc7 253 aervlee 259
                  +r+l  
  CCE30739.1 918 MRRLLAD 924
                 6666555 PP

  == domain 8  score: 0.7 bits;  conditional E-value: 0.18
        Spc7  143 gleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeel...reelaelkaeiee.kkkelaelqeqleeleek 235 
                  +l+ +l++ ++++e Le++ +e+++ll+e ++e +++++ l++  ++a+      ++++e++   re+l++ ++++++ k++e+++l+  l ele++
  CCE30739.1  882 ELSIQLKESKSQAESLEEELSEVQRLLQERTREGETMRRLLADVDSRADIKVREMRTRMESAieeRERLEDESSTLARrKSRETEQLKHTLRELEQQ 978 
                  3445566666677777777777777777777777777777777776443332322333333322266666666666541456777777777777777 PP

        Spc7  236 ieelkeqkseleeeiaeaervleeck 261 
                  +++l+ ++++lee+ +e +r ++e +
  CCE30739.1  979 VKSLTHERDDLEERQREWKRRRDELE 1004
                  77777777777777777777766654 PP

  == domain 9  score: 6.7 bits;  conditional E-value: 0.0026
        Spc7  153 edkelLekqeeeldellpeleeekaeleeeleklqeaaeelesid...keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksel 246 
                  ++ e+L++   el++ +++l++e+++lee+ ++ +++++ele+i+   ++e ee+r+++++l + ++  + +l e ++q+ +l++ +++ +++++++
  CCE30739.1  963 RETEQLKHTLRELEQQVKSLTHERDDLEERQREWKRRRDELEAIEskaSAETEEMRSTVSQLRTALDTSEMQLREGEKQRGDLRTMLDDSRARYEKV 1059
                  5566666677777777777777777776666666666666666443236778888888888888888888888888888888888888888888888 PP

        Spc7  247 eeeiaeaervl 257 
                    e++ a++ l
  CCE30739.1 1060 ARELKTAQSKL 1070
                  88888777654 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   3.5      0.04        45      57     105 ..     211     263 ..     197     274 .. 0.63
   2 ?   15.1  20.2   1.5e-05     0.017      25     135 ..     331     444 ..     326     449 .. 0.91
   3 ?    5.5   1.1     0.014        16      25      81 ..     436     492 ..     434     495 .. 0.85
   4 ?    4.2  18.5     0.035        39      19      97 ..     577     658 ..     572     669 .. 0.60
   5 ?    0.4  19.5      0.56   6.2e+02      21     135 ..     669     786 ..     661     794 .. 0.70
   6 ?    6.7  25.8    0.0059       6.6       1     128 [.     813     944 ..     813     950 .. 0.90
   7 ?   10.4  13.9   0.00046      0.51      39     105 ..     939    1009 ..     930    1012 .. 0.81
   8 ?    6.3   3.9    0.0082       9.2      50     104 ..    1010    1068 ..    1007    1074 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.04
  CENP-F_leu_zip  57 lkeeieelaeelreleldLvalrsekeeLekelqkkqerv....seLeslnss 105
                     l e i++l+ +      +L++++ +k+eL+k+  ++ e+     ++Le+l+ss
      CCE30739.1 211 LVEYINQLNLRGDMVMEELKKVSADKDELKKKHDQSEEKLrqtlEQLETLQSS 263
                     55556666666666666777777777777776665555431111445555544 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.5e-05
  CENP-F_leu_zip  25 kvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsek...eeLekelqkkqervseLeslnsslenlleekEqe 116
                      +  L++e+     + ++++  +E+ ++e+++ +e+   lae+l++ + +L++ r  k   e+L+k+l + ++++++L ++  s +++l++ E++
      CCE30739.1 331 EIPHLQAEVASKTGEVQQLKGKVEDLQKELSAAQENSTSLAENLEKATKQLSESRDAKgsqETLQKQLDQRNSEIKTLSARLDSAQSQLKKVEEQ 425
                     688999***********************************************9965433399******************************** PP

  CENP-F_leu_zip 117 kvqmkeeskaaveeLqtql 135
                      ++ k+e+ ++++   t  
      CCE30739.1 426 AAKDKQEHVSKIKDVDTKS 444
                     *******999998877765 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.014
  CENP-F_leu_zip  25 kvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrse 81 
                     k++  +    +++++++k+   a  sk+ +  l ++ie l++e ++  +++++l++ 
      CCE30739.1 436 KIKDVDTKSADLDAKLTKANSAASISKKLIDDLSQQIEGLKKEKSDSLAKIDELTKK 492
                     677777777888999999999999999*************99999999999888875 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.035
  CENP-F_leu_zip  19 adsLkdkvenLerelemseenqekvil...eaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervs 97 
                     ++ L+  + +L  e+e+ +++ ek+       E+ ++e+e+l+e++ ++ +   e +  ++ l +eke+Lek++ + q ++ 
      CCE30739.1 577 NAALESEIAKLRTEVETKDREIEKLSKkrkSEEDLREEIENLQENLLTIGQDHVEAKERIKGLEQEKEHLEKQIVELQTQIA 658
                     4566666666666666666666655431113455666666666666666666666666666666777777777777666664 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.56
  CENP-F_leu_zip  21 sLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLek...elqkkqervseLeslnsslenllee 112
                     + +   ++L++e  +++ +   +  +   +++ ++t  + +  l++ l+  + +L++lr++   L+k   el  k ++ + +e+ + +l++ l++
      CCE30739.1 669 KTQSDLDELQKEYDDLKGKSATLQSDLGAAQQLAQTRYKDLTDLRAVLQSAQPELKSLREDSAALKKardELSAKTKELKGMEKKETDLKRDLSK 763
                     44555667777777777777777777777777777777777777788888888888888777777763334555566666667777888888888 PP

  CENP-F_leu_zip 113 kEqekvqmkeeskaaveeLqtql 135
                     + q     + e k+  e L+++ 
      CCE30739.1 764 AQQVSSDREREIKTLQERLKAES 786
                     88888888888888888887775 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.0059
  CENP-F_leu_zip   1 DekkklhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqer 95 
                     +  k ++++ +L+++  + ++L+ +v+ Le ++  + +++ +   eaE + ++  + +  +  ++ + +el+++L++ +s+ e+Le+el + q+ 
      CCE30739.1 813 WSAKAEKTERELQKAHDELNKLRPRVKDLEEQMHKLRRDKAASQEEAEFKSQQYTNAQGLLASMRDQATELSIQLKESKSQAESLEEELSEVQRL 907
                     778999***************************************************************************************** PP

  CENP-F_leu_zip  96 vseLeslnsslenlleekEqe....kvqmkeeskaav 128
                      +e  +  +++++ll +         ++m+ ++++a+
      CCE30739.1 908 LQERTREGETMRRLLADVDSRadikVREMRTRMESAI 944
                     ***9999999999999887765443344555555555 PP

  == domain 7  score: 10.4 bits;  conditional E-value: 0.00046
  CENP-F_leu_zip   39 nqekvileaEtskaevetl....keeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnss 105 
                        e++i e E    e +tl      e e+l+++lrele+++++l+ e+++Le+  +++++r +eLe+++s+
      CCE30739.1  939 RMESAIEERERLEDESSTLarrkSRETEQLKHTLRELEQQVKSLTHERDDLEERQREWKRRRDELEAIESK 1009
                      4577777777777777776222145789**************************************99876 PP

  == domain 8  score: 6.3 bits;  conditional E-value: 0.0082
  CENP-F_leu_zip   50 skaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervs....eLeslns 104 
                      + ae e++++ + +l++ l   e++L +  +++ +L  +l +++ r +    eL++++s
      CCE30739.1 1010 ASAETEEMRSTVSQLRTALDTSEMQLREGEKQRGDLRTMLDDSRARYEkvarELKTAQS 1068
                      55788889999999999999999999999999999999999888765411125555554 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00019      0.21       2      23 .]     345     366 ..     344     366 .. 0.94
   2 ?   -2.4   0.1       4.5   5.1e+03       7      16 ..     633     642 ..     632     642 .. 0.90
   3 ?   -1.4   0.1       2.3   2.5e+03      12      20 ..     756     764 ..     755     765 .. 0.87
   4 ?    5.7   0.2     0.013        14       2      16 ..     830     844 ..     829     847 .. 0.92
   5 ?   -2.8   0.7       6.4   7.2e+03      11      19 ..     895     903 ..     890     903 .. 0.85
   6 ?   -2.2   0.6       4.2   4.7e+03       2      16 ..     964     978 ..     963     978 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
  Pox_A_type_inc   2 EmsrlRsRIsDLErqLseCrrN 23 
                     E+++l+ +++DL ++Ls++ +N
      CCE30739.1 345 EVQQLKGKVEDLQKELSAAQEN 366
                     9****************99876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.5
  Pox_A_type_inc   7 RsRIsDLErq 16 
                     ++RI  LE++
      CCE30739.1 633 KERIKGLEQE 642
                     89******97 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.3
  Pox_A_type_inc  12 DLErqLseC 20 
                     DL+r Ls++
      CCE30739.1 756 DLKRDLSKA 764
                     9*****985 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.013
  Pox_A_type_inc   2 EmsrlRsRIsDLErq 16 
                     E++ lR R+ DLE q
      CCE30739.1 830 ELNKLRPRVKDLEEQ 844
                     99***********77 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 6.4
  Pox_A_type_inc  11 sDLErqLse 19 
                     ++LE +Lse
      CCE30739.1 895 ESLEEELSE 903
                     68*****97 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 4.2
  Pox_A_type_inc   2 EmsrlRsRIsDLErq 16 
                     E ++l+   ++LE+q
      CCE30739.1 964 ETEQLKHTLRELEQQ 978
                     6678888889***98 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   1.9      0.16   1.7e+02      56     261 ..     215     258 ..     150     286 .. 0.62
   2 ?    6.3   5.6    0.0055       6.2     212     269 ..     326     383 ..     312     400 .. 0.49
   3 ?    7.7   6.1    0.0021       2.4     198     269 ..     564     635 ..     546     636 .. 0.84
   4 ?    7.8  57.9     0.002       2.2      18     288 ..     634     950 ..     633     952 .. 0.74
   5 ?    6.8  18.7    0.0039       4.4     157     268 ..     957    1071 ..     947    1087 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.16
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  56 leelrkqldeltkerarlqleldnlreeledlrkkyekelnkreevEaelkalrkdldeatlarvdLekkvesLkeelaflkkvheeEvkelqkqvseq 154
                 +++l  + d + +e +++ ++ d+l++++++  +k+                                                               
  CCE30739.1 215 INQLNLRGDMVMEELKKVSADKDELKKKHDQSEEKLR-------------------------------------------------------------- 251
                 3333333333333333333333333333333333333.............................................................. PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 155 vlvevdaarkldLteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerl 253
                                                                                                                    
  CCE30739.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

                 HHHHHHHH CS
    Filament 254 eaeleklq 261
                  + le+l+
  CCE30739.1 252 -QTLEQLE 258
                 .3333332 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0055
                 XX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 212 rsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklselee 269
                  s  eei  l+ ++ s++ e+++lk++ + l+++l+ ++e+  + +e+l+++ ++l e
  CCE30739.1 326 FSYDEEIPHLQAEVASKTGEVQQLKGKVEDLQKELSAAQENSTSLAENLEKATKQLSE 383
                 5555555555555555555555555555555555555555544444444444444332 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0021
                 XXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 198 eelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklselee 269
                 + + +a+ + s +  + ++ei++lr +++++  e+e+l k+++s e+  +e+e+  e+ l+  q+ ++++e+
  CCE30739.1 564 AGIDQAIVTGSTSNAALESEIAKLRTEVETKDREIEKLSKKRKSEEDLREEIENLQENLLTIGQDHVEAKER 635
                 556677777788888999***********************************9999999988988888875 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.002
                 XXXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.................... CS
    Filament  18 dkVraLEqenkeLeakieeleekk..saevsklkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyeke.................... 94 
                 ++++ LEqe+++Le +i el+ +   s++++  ++  ++ l+el+k+ d+l+ + a lq +l+ +++ +++  k + +                     
  CCE30739.1 634 ERIKGLEQEKEHLEKQIVELQTQIasSQSEATHSSKTQSDLDELQKEYDDLKGKSATLQSDLGAAQQLAQTRYKDLTDLravlqsaqpelkslredsaa 732
                 7999*****************996445555567889999************************999887754444444467777778888888888888 PP

                 ...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXX CS
    Filament  95 ...........lnkreevEaelkalrkdldeatlarvdLekkvesLkeelaflkkvhe...eEvkelqkqvseqvlvevdaar.kldLteilkeiraqy 178
                            +++ + +E++  +l++dl +a+   +d e+++++L+e l+   ++ +   e  ++++k     +  e d+ + +   +++ +e+++ +
  CCE30739.1 733 lkkardelsakTKELKGMEKKETDLKRDLSKAQQVSSDREREIKTLQERLKAESTNKQraeEGKRTTEKD---LRRAEADKIEwSAKAEKTERELQKAH 828
                 87777777766666667777777777************************98655543110333344444...45556555331223445556666666 PP

                 XXXXX...XXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHH CS
    Filament 179 eelae...knreeaeewyksklee..lqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerle...aeleklqeklselee 269
                 +el +   + ++  e+++k + ++   qe+ae +s++  +a+  ++ +r q  +l+i+l++ k+q++sle++l+e++  l+   +e e++++ l+++++
  CCE30739.1 829 DELNKlrpRVKDLEEQMHKLRRDKaaSQEEAEFKSQQYTNAQGLLASMRDQATELSIQLKESKSQAESLEEELSEVQRLLQertREGETMRRLLADVDS 927
                 6655411144444455666665541158899999*****************************************997665111566789999988776 PP

                 ....HHHHHHHHHHHHHHHHHHH CS
    Filament 270 ....elaeireemarqlreYqeL 288
                     +++e+r +m+  ++e ++L
  CCE30739.1 928 radiKVREMRTRMESAIEERERL 950
                 3333699*******999997766 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0039
                  XXXXXXXXXX.XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament  157 vevdaarkld.Lteilkeiraqyeelaek..nreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaele 250 
                  +   ++r+++ L+++l+e+ +q  +l ++    ee ++ +k++ +el+   +k s++ +++++ +++lr  +++ e++l + +kq+  l++ l +  
  CCE30739.1  957 LARRKSRETEqLKHTLRELEQQVKSLTHErdDLEERQREWKRRRDELEAIESKASAETEEMRSTVSQLRTALDTSEMQLREGEKQRGDLRTMLDDSR 1053
                  4444555555588889999888887764411345566678888899988888888899999999999999999999999999999999999999988 PP

                  HHHHHHHHHHHHHHHHHH CS
    Filament  251 erleaeleklqeklsele 268 
                  +r+e+ +++l+ + s+l 
  CCE30739.1 1054 ARYEKVARELKTAQSKLT 1071
                  888776655555555444 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   6.2      0.12   1.4e+02      34     107 ..     152     261 ..     139     294 .. 0.45
   2 ?   13.2   4.5   8.3e-05     0.093      22      71 ..     335     384 ..     331     393 .. 0.90
   3 ?   11.4  11.0    0.0003      0.34      22     115 ..     394     520 ..     387     562 .. 0.74
   4 ?    3.2  19.0     0.096   1.1e+02      35     143 ..     579     687 ..     567     700 .. 0.72
   5 ?    4.8  18.9     0.032        35      13     124 ..     689     805 ..     685     813 .. 0.73
   6 ?    5.5   9.8     0.019        21      49     112 ..     798     861 ..     793     872 .. 0.77
   7 ?    2.2  29.1      0.19   2.1e+02      35     163 ..     871    1001 ..     856    1005 .. 0.67
   8 ?    3.5   5.2     0.078        88      25      85 ..    1013    1073 ..    1002    1141 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.12
        Fez1  34 valkaqlrelrakleekeeeikeleesl...eektlelevcenelqrk.................................kseaellrekvekleeel 96 
                  +l  ++++   kle+ e++  el  s+   +++++ +e  e+ l+++                                 +++++ l++k ++ ee+l
  CCE30739.1 152 TELSPEIKQRLRKLEKLEATYPELLRSYrvaHKRATAIEPFEKALRENtplasirdpealveyinqlnlrgdmvmeelkkvSADKDELKKKHDQSEEKL 250
                 556666777777777777777666655411145566666666666665333332222111111111111111111111100333333333333333333 PP

        Fez1  97 kelreelsels 107
                 +++ e+l++l+
  CCE30739.1 251 RQTLEQLETLQ 261
                 22222222222 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 8.3e-05
        Fez1  22 sqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevc 71 
                  qaev++k++e+ +lk+++ +l+++l++ +e+ ++l e+le+ t++l + 
  CCE30739.1 335 LQAEVASKTGEVQQLKGKVEDLQKELSAAQENSTSLAENLEKATKQLSES 384
                 69**************************************9999888765 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.0003
        Fez1  22 sqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrk....kseaellrekvekleeelkelreelselsleeeeaa.. 114
                  q+++ q+ sei +l a+l  ++++l++ ee++ + +++  +k +++++  ++l+ k    +s a++ ++ ++ l++++++l++e s++ ++ +e +  
  CCE30739.1 394 LQKQLDQRNSEIKTLSARLDSAQSQLKKVEEQAAKDKQEHVSKIKDVDTKSADLDAKltkaNSAASISKKLIDDLSQQIEGLKKEKSDSLAKIDELTkk 492
                 689999**************************99999999999999887776666654443777788888899999******99988876665555555 PP

        Fez1 115 ...........................l 115
                                            +
  CCE30739.1 493 idtspapapvtnavapvvggpsptastA 520
                 5555555555555555555555555550 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.096
        Fez1  35 alkaqlrelrakleekeeeikeleesleekt...lelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeel 130
                 al +++  lr+++e+k++ei++l++++++ +   +e+e+++++l    +++   +e+++ le+e ++l +++ el+++ ++++   +ea +  +++++l
  CCE30739.1 579 ALESEIAKLRTEVETKDREIEKLSKKRKSEEdlrEEIENLQENLLTIGQDHVEAKERIKGLEQEKEHLEKQIVELQTQIASSQ---SEATHSSKTQSDL 674
                 67888899999999999999999888776651225778888888888888888899999999999999988888665444433...3333334444678 PP

        Fez1 131 eelkreverlrae 143
                 +el++e + l+++
  CCE30739.1 675 DELQKEYDDLKGK 687
                 8888888887764 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.032
        Fez1  13 slLKqQLkdsqaevtqklseivalkaqlrelraklee...keeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsl 108
                 + L + L  +q+   ++ +++  l+a l+ ++ +l++     +++k+++++l+ kt+el+ +e++    k + +  ++  +  e+e+k l+e+l++ s+
  CCE30739.1 689 ATLQSDLGAAQQLAQTRYKDLTDLRAVLQSAQPELKSlreDSAALKKARDELSAKTKELKGMEKKETDLKRDLSKAQQVSSDREREIKTLQERLKAEST 787
                 678888999999999*************99998776511055667888899999****99998888888888888888889999999999999998776 PP

        Fez1 109 eeeeaa..lesdeakaqr 124
                 ++++a+  ++++e+  +r
  CCE30739.1 788 NKQRAEegKRTTEKDLRR 805
                 655544222233323333 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.019
        Fez1  49 ekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeee 112
                 ++e+ ++++e+   e +++ e+ e elq++++e + lr +v+ lee++++lr++ +++++e+e 
  CCE30739.1 798 TTEKDLRRAEADKIEWSAKAEKTERELQKAHDELNKLRPRVKDLEEQMHKLRRDKAASQEEAEF 861
                 56777788888888889999*******************************9977764433322 PP

  == domain 7  score: 2.2 bits;  conditional E-value: 0.19
        Fez1   35 alkaqlrelrakleekeeeikeleesleektlelevcenelqrk.kseaellrekvekleeelkelreelselsleeeeaa.lesdeakaqrqeaee 129 
                   l a++r+  ++l+ + +e k+  eslee   e++++ +e  r+ ++   ll +  ++++ +++e+r++++++ +e+e+ + ++s+ a+ + +e+e+
  CCE30739.1  871 GLLASMRDQATELSIQLKESKSQAESLEEELSEVQRLLQERTREgETMRRLLADVDSRADIKVREMRTRMESAIEERERLEdESSTLARRKSRETEQ 967 
                  3445555555555555555555555555556666666555555546667888999999999999999998887666555542444455566666778 PP

        Fez1  130 leelkreverlraeLkeerqkkeeqassFeqERr 163 
                  l++  re+e+  ++L++er+  ee++ ++++ R 
  CCE30739.1  968 LKHTLRELEQQVKSLTHERDDLEERQREWKRRRD 1001
                  8888888888889999999999999999998875 PP

  == domain 8  score: 3.5 bits;  conditional E-value: 0.078
        Fez1   25 evtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaell 85  
                  e  +  s + +l++ l   + +l+e e++  +l++ l++  +  e++  el+ ++s+ ++ 
  CCE30739.1 1013 ETEEMRSTVSQLRTALDTSEMQLREGEKQRGDLRTMLDDSRARYEKVARELKTAQSKLTTA 1073
                  4444444555667777777777777777777777777777777777777776665544333 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.73   8.2e+02      55      82 ..     150     177 ..     125     191 .. 0.64
   2 ?    8.1  11.3    0.0033       3.7      15     110 ..     159     269 ..     153     274 .. 0.75
   3 ?    9.9   7.0   0.00088      0.99      51     108 ..     327     384 ..     312     393 .. 0.73
   4 ?    3.4  16.4     0.093     1e+02      12     104 ..     392     485 ..     384     496 .. 0.76
   5 ?    3.8   9.1     0.068        76      45      90 ..     573     621 ..     526     622 .. 0.76
   6 ?    8.5  24.9    0.0024       2.7      14     123 ..     580     685 ..     578     692 .. 0.85
   7 ?    1.1  25.9      0.46   5.2e+02      11     127 ..     674     804 ..     674     810 .. 0.76
   8 ?    0.0  28.6         1   1.1e+03      22     132 ..     772     893 ..     769     894 .. 0.77
   9 ?    1.0   7.5      0.51   5.7e+02      56     100 ..     873     917 ..     865     927 .. 0.79
  10 ?    4.9  16.7     0.032        36      12     103 ..     973    1068 ..     972    1090 .. 0.78
  11 ?    0.3   0.3      0.81   9.1e+02      65     103 ..    1105    1143 ..    1045    1148 .. 0.50

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.73
      APG6_N  55 eleklekeeeelleeLkelekereelea 82 
                    +l+ e ++ l++L++le++  el +
  CCE30739.1 150 NNTELSPEIKQRLRKLEKLEATYPELLR 177
                 3455666677777777777776655544 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0033
      APG6_N  15 dkqleqaekerdaYeeflkklkkekkeeek...............qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeee 98 
                 +++l+++ek   +Y e l+  +  +k +++               +  + e+l e + +l+   +  +eeLk++ + ++el+++  + ee+l++  e+ 
  CCE30739.1 159 KQRLRKLEKLEATYPELLRSYRVAHKRATAiepfekalrentplaSIRDPEALVEYINQLNLRGDMVMEELKKVSADKDELKKKHDQSEEKLRQTLEQL 257
                 55555555555555555555555544443355555555555555557899999999**************************************99999 PP

      APG6_N  99 erfwreynelql 110
                 e   +++++ ++
  CCE30739.1 258 ETLQSSQSATSV 269
                 999888888766 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00088
      APG6_N  51 eleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynel 108
                 + +ee+  l++e +++  e ++l+ + e+l++el+a++e +  l e+ e+  ++ +e 
  CCE30739.1 327 SYDEEIPHLQAEVASKTGEVQQLKGKVEDLQKELSAAQENSTSLAENLEKATKQLSES 384
                 5567777788888888888888888888888888888888888888777777777664 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.093
      APG6_N  12 eeldkqleqaekerdaYeeflkklkkekkeeek.qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwre 104
                 e+l+kql+q ++e++++++ l+  +++ k+ e+   ++ +e   ++++++ + ++l ++L ++ ++ +  ++ + +l+++ e l++e+   + +
  CCE30739.1 392 ETLQKQLDQRNSEIKTLSARLDSAQSQLKKVEEqAAKDKQEHVSKIKDVDTKSADLDAKLTKANSAASISKKLIDDLSQQIEGLKKEKSDSLAK 485
                 789*******************999997776644344444444558888888888888888888888888888888888888888887666555 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.068
      APG6_N  45 qdeeleeleeeleklekeeeelleeLkeleker...eeleaelaaleee 90 
                   ++ ++le e++kl+ e e++ +e+++l k+r   e+l++e+++l+e 
  CCE30739.1 573 GSTSNAALESEIAKLRTEVETKDREIEKLSKKRkseEDLREEIENLQEN 621
                 45677999*********99999888888876642227899999998875 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.0024
      APG6_N  14 ldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlel 112
                 l++++++++ e ++  +  +kl k++k+ee+ +ee+e+l+e l ++ ++  e+ e +k le+e+e le+++ +l+ + +  + e +      ++ q +l
  CCE30739.1 580 LESEIAKLRTEVETKDREIEKLSKKRKSEEDLREEIENLQENLLTIGQDHVEAKERIKGLEQEKEHLEKQIVELQTQIASSQSEATH----SSKTQSDL 674
                 67788888888888888899999999999999**********************************************999888655....45566666 PP

      APG6_N 113 leleeeldsle 123
                  el++e d l+
  CCE30739.1 675 DELQKEYDDLK 685
                 67777776665 PP

  == domain 7  score: 1.1 bits;  conditional E-value: 0.46
      APG6_N  11 leeldkqleqaekerdaYeeflkklkkekkeeek..............qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeeleale 95 
                 l+el+k++++++ +  ++++ l   ++ +++  k              + ++l+e    l+k ++e +++ +eLk +ek++ +l+++l+++++ ++++e
  CCE30739.1 674 LDELQKEYDDLKGKSATLQSDLGAAQQLAQTRYKdltdlravlqsaqpELKSLREDSAALKKARDELSAKTKELKGMEKKETDLKRDLSKAQQVSSDRE 772
                 46677777777777777777666666655444337778777777744434444445555999999********************************** PP

      APG6_N  96 eeeerfwreynelqlelleleeeldsleaqye 127
                 +e +   ++ ++ ++++++ ee ++  e  ++
  CCE30739.1 773 REIKTLQERLKAESTNKQRAEEGKRTTEKDLR 804
                 99999999999999999999998887776665 PP

  == domain 8  score: 0.0 bits;  conditional E-value: 1
      APG6_N  22 ekerdaYeeflkklkkekkeeek...........qdeeleeleee.......leklekeeeelleeLkelekereeleaelaaleeelealeeeeerfw 102
                 e+e+++++e lk   ++k+ +e+                   e +        ek+e+e +++  eL++l    ++le+++++l++ ++a +ee e + 
  CCE30739.1 772 EREIKTLQERLKAESTNKQRAEEgkrttekdlrrA-------EADkiewsakAEKTERELQKAHDELNKLRPRVKDLEEQMHKLRRDKAASQEEAEFKS 863
                 66666666666654444444333666633333332.......3335555566999******************************************** PP

      APG6_N 103 reynelqlelleleeeldsleaqyehaqnq 132
                 ++y + q  l+++ ++   l  q++  ++q
  CCE30739.1 864 QQYTNAQGLLASMRDQATELSIQLKESKSQ 893
                 *********************999988776 PP

  == domain 9  score: 1.0 bits;  conditional E-value: 0.51
      APG6_N  56 leklekeeeelleeLkelekereeleaelaaleeelealeeeeer 100
                 l+ ++++  el  +Lke +++ e+le+el++ ++ l+++ +e e 
  CCE30739.1 873 LASMRDQATELSIQLKESKSQAESLEEELSEVQRLLQERTREGET 917
                 677888888889999999999999999999999888888887665 PP

  == domain 10  score: 4.9 bits;  conditional E-value: 0.032
      APG6_N   12 eeldkqleqaekerdaYeeflkklkkekkeeek....qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwr 103 
                   el++q+++++ erd++ee  ++ k++++e e+       e+ee +  +++l+ + ++ + +L+e ek+r +l+  l + ++  e++ +e +   +
  CCE30739.1  973 RELEQQVKSLTHERDDLEERQREWKRRRDELEAieskASAETEEMRSTVSQLRTALDTSEMQLREGEKQRGDLRTMLDDSRARYEKVARELKTAQS 1068
                  689999999999999999999999999888776666555555666666999999999999999999999999999888888888888777665555 PP

  == domain 11  score: 0.3 bits;  conditional E-value: 0.81
      APG6_N   65 elleeLkelekereeleaelaaleeelealeeeeerfwr 103 
                   +   L+ le+++++l+a+l     +l + ++  e++w 
  CCE30739.1 1105 LKTILLQFLEQKDARLRAQLVPVLGKLLKFDRSDEQKWA 1143
                  333346778888888888887777777777777777775 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   2.1     0.022        25      45      90 ..     225     270 ..     195     294 .. 0.62
   2 ?   10.4  21.9   0.00028      0.32      45     167 ..     342     463 ..     305     481 .. 0.86
   3 ?    3.9  16.8     0.028        31      85     161 ..     581     663 ..     529     674 .. 0.54
   4 ?    4.0  29.9     0.025        28       7     167 ..     627     793 ..     627     804 .. 0.74
   5 ?    4.0  26.2     0.026        29      45     171 ..     813     947 ..     796     955 .. 0.71
   6 ?    4.9  19.3     0.013        15      37     149 ..     964    1071 ..     950    1124 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.022
   Golgin_A5  45 lsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaes 90 
                 ++ el ++++++d l+++  +++++++q   +l+ l+++q+a +  
  CCE30739.1 225 VMEELKKVSADKDELKKKHDQSEEKLRQTLEQLETLQSSQSATSVD 270
                 4455555555555555555555555555555555555555444433 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00028
   Golgin_A5  45 lsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikd 143
                 ++ e+++lk + + l++el +++++  +l  +l++  +q  +e++ ++  ++ l++ql++ +++ ++++a l + + +l+ +ee+  + k++ +s+ikd
  CCE30739.1 342 KTGEVQQLKGKVEDLQKELSAAQENSTSLAENLEKATKQL-SESRDAKGSQETLQKQLDQRNSEIKTLSARLDSAQSQLKKVEEQAAKDKQEHVSKIKD 439
                 56688899999999999*****999999*99999887766.899999**************************************************** PP

   Golgin_A5 144 rekeieklrnqlttkslssssese 167
                  +++  +l ++lt+ +   s  + 
  CCE30739.1 440 VDTKSADLDAKLTKANSAASISKK 463
                 **********99987655554444 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.028
   Golgin_A5  85 qaeaeslreqlqele...eqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdre...keieklrnqlttksls 161
                 ++e+ +lr +++  +   e+l+++rk++e++++e+e+l+e+l ++ +++v++k+ +++  +++e   k+i +l+ q+++++ +
  CCE30739.1 581 ESEIAKLRTEVETKDreiEKLSKKRKSEEDLREEIENLQENLLTIGQDHVEAKERIKGLEQEKEhleKQIVELQTQIASSQSE 663
                 23333333333222211144555666667777777777777777777777777666655555431114444455555444333 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.025
   Golgin_A5   7 qeledYKqkAarILQsKekliasLke.....gsgeeglesstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqelee 100
                 q++ + K++ + + Q Ke+l +++ e     +s+++++  s +++ +ldel++e d l+ +++ l++ +    ++l+++  +  ++ + + +  q   +
  CCE30739.1 627 QDHVEAKERIKGLEQEKEHLEKQIVElqtqiASSQSEATHSSKTQSDLDELQKEYDDLKGKSATLQSDLGAA-QQLAQTRYKDLTDLRAVLQSAQPELK 724
                 67778899999999***9886655541112222333333456677889999999998888888888888765.46777777777888777777777778 PP

   Golgin_A5 101 qleeerkakeeveaelerlkeelrylee...elvrskatlqsrikdrekeieklrnqlttkslssssese 167
                  l+e+++a +++++el+ +++el+ +e+   +l+r  ++ q+   dre+ei+ l++ l+ +s ++  ++e
  CCE30739.1 725 SLREDSAALKKARDELSAKTKELKGMEKketDLKRDLSKAQQVSSDREREIKTLQERLKAESTNKQ-RAE 793
                 888999999999999999999998776422278888888999999**************9998874.444 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.026
   Golgin_A5  45 lsaeldelkqerdllreelqklnqqieqlrtelqdl...eaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsr 140
                  sa+ +++++e + +++el+kl+ ++++l  ++++l   +a  q+eae   +q ++++  l++ r +  e++ +l++ k + ++leeel++++  lq+r
  CCE30739.1 813 WSAKAEKTERELQKAHDELNKLRPRVKDLEEQMHKLrrdKAASQEEAEFKSQQYTNAQGLLASMRDQATELSIQLKESKSQAESLEEELSEVQRLLQER 911
                 344445555555555555555555555555555554111445667777777999999999*************************************** PP

   Golgin_A5 141 ikdreke...iek..lrnqlttkslsssseselesR 171
                  ++ e++   + +   r++++++++ +  es +e+R
  CCE30739.1 912 TREGETMrrlLADvdSRADIKVREMRTRMESAIEER 947
                 **9998733233323578888888888888888887 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.013
   Golgin_A5   37 eglesstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrs 133 
                  e+ ++ + +  el++  +   + r++l++ + + ++ r el+ +e++++ae+e++r  +++l+++l++++++ +    e e+++ +lr++ ++ +  
  CCE30739.1  964 ETEQL-KHTLRELEQQVKSLTHERDDLEERQREWKRRRDELEAIESKASAETEEMRSTVSQLRTALDTSEMQLR----EGEKQRGDLRTMLDDSRAR 1055
                  33232.44556677766667777778888888888888888888888888888888888888888887777766....4445555555555555544 PP

   Golgin_A5  134 katlqsrikdrekeie 149 
                   +++  ++k  ++++ 
  CCE30739.1 1056 YEKVARELKTAQSKLT 1071
                  4444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3360  (0.187406); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                       314  (0.0175135); expected 17.9 (0.001)
Passed Fwd filter:                       221  (0.0123264); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 6.03u 0.44s 00:00:06.47 Elapsed: 00:00:01.11
# Mc/sec: 3137.31
//
Query:       CCE30740.1  [L=443]
Description: uncharacterized protein CPUR_04589 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-19   69.0   0.5    4.7e-19   67.8   0.5    1.6  1  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
  ------ inclusion threshold ------
       0.17   12.2   0.0       0.35   11.2   0.0    1.5  1  CCDC-167        Coiled-coil domain-containing protein 167
        7.4    7.4   7.4        5.2    7.9   1.1    3.3  3  Ima1_N          Ima1 N-terminal domain


Domain annotation for each model (and alignments):
>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.5   7.9e-23   4.7e-19       1      54 []     319     375 ..     319     375 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 7.9e-23
  zinc_ribbon_10   1 wfDrvldvLvGddetsaknryalICskChshnGlap..keeleev.kyrCpkCgaln 54 
                     w+Dr+ dvL+G+det+aknryalIC  C+ +nG+ap  +++l+ev  ++C  Cga+n
      CCE30740.1 319 WYDRIFDVLLGEDETAAKNRYALICHACRLVNGQAPpgTKTLAEVgMWKCCGCGATN 375
                     9*************************************9******9********987 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.9e-05      0.35      39      83 ..      93     137 ..      84     138 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.9e-05
    CCDC-167  39 sleeEeaslkeqleenekeLksLrkeNrksmllsvalllvlaLvY 83 
                 s+e+ +++l++++++ + +L +Lr + r+  +l  + l+  +LvY
  CCE30740.1  93 SFEKTLSTLSTKITDAQARLDRLRAKSRRVKVLWTLYLGFAYLVY 137
                 78999***************************************9 PP

>> Ima1_N  Ima1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.31   1.8e+03      73     110 ..      57      95 ..      32     109 .. 0.67
   2 ?    0.3   1.2       0.2   1.2e+03     113     131 ..     328     346 ..     214     350 .. 0.58
   3 ?    7.9   1.1   0.00088       5.2      19      50 ..     359     396 ..     341     428 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.31
      Ima1_N  73 sssllCskClkn..qelkvsklaeylpke.deddpeyeeke 110
                 ++   C  C+    ++l++sk+ ++ p + d+++p   + e
  CCE30740.1  57 QNGGSCFGCSASnlSALQLSKMVSFWPWKgDSSSPA--SFE 95 
                 566667777654125788889999999877776665..444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.2
      Ima1_N 113 leeykkeleerYpqlCesC 131
                 l e ++  ++rY  +C+ C
  CCE30740.1 328 LGEDETAAKNRYALICHAC 346
                 3333445556666666666 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.00088
      Ima1_N  19 s......feCpsCeayNgfdedGdindeipeqeeesln 50 
                 +      ++C  C a+Ng +++G+   e   +++++  
  CCE30740.1 359 TlaevgmWKCCGCGATNGEKDEGKRIVEEVLASTTTDG 396
                 3334566****************865544444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 3590.78
//
Query:       CCE30741.1  [L=579]
Description: probable dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-39  135.1   0.1    1.9e-22   79.9   0.1    2.2  2  Pkinase      Protein kinase domain
      1e-14   54.5   0.2    4.2e-10   39.3   0.0    2.1  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.1   2.1e-26   1.9e-22       1     132 [.     113     255 ..     113     267 .. 0.87
   2 !   53.0   0.0   3.4e-18   3.1e-14     137     264 .]     386     546 ..     375     546 .. 0.87

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 2.1e-26
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.....CT...TB--EEEEEEE....SSEEEEEEE--TTEBHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.....hp...nivrlyevfee....kdelylvleyveggelad 87 
                 y++++klG G f++V   ++++++k+vA+K+++         ++++ Eik+l+++      hp   ++v l+++fe+     +++++v+e++ ++ l  
  CCE30741.1 113 YTVVRKLGWGHFSTVWLSRDNANEKHVALKVVRSAAHYT---ETAIDEIKLLNRIVqakpdHPgrkHVVSLLDSFEHkgphGTHVCMVFEVLGEN-LLG 207
                 7899****************************9987776...568*******998555566533339**********999899********9966.777 PP

                 HHH..HHSS--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEE CS
     Pkinase  88 lle..rkgslseeeakkiakqilegleylH.skgiiHrDlKpeNiLid 132
                 l++  +++ +++  +k+i+kq+l gl+ylH + giiH DlKpeN+Li+
  CCE30741.1 208 LIRrwNHRGIPMPLVKQITKQVLLGLDYLHrECGIIHTDLKPENVLIE 255
                 777688889*********************6667*************8 PP

  == domain 2  score: 53.0 bits;  conditional E-value: 3.4e-18
                 EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT....SHH...HHHT CS
     Pkinase 137 lKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg....etkeklpeas 231
                 +Ki+D+G a+ ++++  +t+ + t++Y++PEv+ + + ++++DvWs++ +++el+tg  +f  ++g++ + k+ d++ +i+++lg       ++ ++ +
  CCE30741.1 386 VKIADLGNACWVNHH--FTNDIQTRQYRSPEVILGAKWGASTDVWSMAAMVFELITGDYLFDPQSGTK-YGKDDDHVAQIIELLGpfprSLCLSGKWSQ 481
                 9*********99995..799******************************************776665.778888889999999977763344444445 PP

                 TS................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 232 ei................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 ei                                 + +  +l  +l+  p kR  a  +  h +l
  CCE30741.1 482 EIfnrkgelrnihrlrhwalpdvlrekyhfkedeAKRIAAFLVPMLELIPDKRANAGGMAGHGWL 546
                 558888999999*******************999999999**************99999999886 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   4.7e-14   4.2e-10       3     141 ..     115     259 ..     113     279 .. 0.82
   2 !   13.1   0.0   4.8e-06     0.043     142     202 ..     386     440 ..     382     454 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 4.7e-14
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-....B...TTB--EEEEEESSSS....EEEEEE--TTEBH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.k....h...pnivkllgvctkeep....llivteyvkgGdL 88 
                  + +klG G+f++V+  + +     +e +Va+K++++ a+ +  e  ++e+k+++++ +    h   +++v+ll    +++p    +++v+e + + +L
   CCE30741.1 115 VVRKLGWGHFSTVWLSRDN----ANEKHVALKVVRSAAHYT--ETAIDEIKLLNRIvQakpdHpgrKHVVSLLDSFEHKGPhgthVCMVFEVLGE-NL 205
                  5789**********99888....8999*******7776666..7788899888876542233333369*********766666669999998865.78 PP

                  HHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETTE CS
  Pkinase_Tyr  89 lkfLrkkekekltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenkv 141
                  l  +r+ +++ + +  + +++ qv  G++yL+++  ++H dl   NvL++ ++v
   CCE30741.1 206 LGLIRRWNHRGIPMPLVKQITKQVLLGLDYLHRECgIIHTDLKPENVLIEIGDV 259
                  88999988***********************987549************97554 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.8e-06
                  EEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTS CS
  Pkinase_Tyr 142 vkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlg 202
                  vki+D G a  +      ++ ++     ++ +pE++   k   ++DvWs + +++E++t g
   CCE30741.1 386 VKIADLGNACWV-----NHHFTNDIQTRQYRSPEVILGAKWGASTDVWSMAAMVFELIT-G 440
                  788888877777.....33334455566899**************************99.5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.35
# Mc/sec: 4889.88
//
Query:       CCE30742.1  [L=428]
Description: uncharacterized protein CPUR_04591 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-10   41.0   0.0    4.3e-10   39.5   0.0    1.8  1  Med26     TFIIS helical bundle-like domain
  ------ inclusion threshold ------
       0.12   11.7   0.0       0.22   10.8   0.0    1.4  1  DUF5309   Family of unknown function (DUF5309)


Domain annotation for each model (and alignments):
>> Med26  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   4.8e-14   4.3e-10       6      53 .]     272     319 ..     268     319 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 4.8e-14
                 S---....HHHHHHSHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHH CS
       Med26   6 LeklpittetLkstgIGkvVnalrkhkhetaevktlAksLvekWkkav 53 
                 L kl++ +etL s+g+GkvV +++++k++++++k++A++L+ +W+++v
  CCE30742.1 272 LTKLNVEKETLLSSGVGKVVLFYTRSKKPEPSIKRMAERLLGEWSRPV 319
                 77898899**************************************98 PP

>> DUF5309  Family of unknown function (DUF5309)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.4e-05      0.22      90     126 ..     180     215 ..     173     244 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.4e-05
     DUF5309  90 elayqvakklkElkrdvEkalingnkasvdgskttar 126
                 +l+ ++ ++l Elk+++Eka+ + n+a+++g+ + + 
  CCE30742.1 180 DLEDEIDDQLAELKVRMEKACRADNEARESGNPA-VH 215
                 567899*************************976.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1058  (0.0590105); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.37
# Mc/sec: 3461.17
//
Query:       CCE30743.1  [L=464]
Description: uncharacterized protein CPUR_04592 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-37  127.6   3.5    3.1e-37  127.3   3.5    1.1  1  Brr6_like_C_C  Di-sulfide bridge nucleocytoplasmic transport 
  ------ inclusion threshold ------
      0.087   12.9   0.0       0.23   11.6   0.0    1.6  2  DUF3898        Domain of unknown function (DUF3898)


Domain annotation for each model (and alignments):
>> Brr6_like_C_C  Di-sulfide bridge nucleocytoplasmic transport domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   3.5   3.5e-41   3.1e-37       2     132 ..     243     371 ..     242     372 .. 0.96

  Alignments for each domain:
  == domain 1  score: 127.3 bits;  conditional E-value: 3.5e-41
  Brr6_like_C_C   2 sylqllfnlllvllllylvisfvltikkDiekkleekkaellaeieeCkkeYeeNkCdpetrvpaleekCeewekCmnrdpeskverakvsaetla 97 
                    +++ql +n++l+++l+y+++s+v+ti++Di ++  ++++++  +ie+C+ ++++N C+ ++r pal+  C+ew++Cm +dp + ++r+kv+a+++a
     CCE30743.1 243 RWMQLGANVFLISVLTYVCWSVVSTIRSDIYNANLAEHRTIIGQIEACQDKWRINGCQDNDR-PALKVLCDEWHECMRQDPDA-IMRVKVTAKQVA 336
                    79*******************************************************87666.******************99.************ PP

  Brr6_like_C_C  98 eiinsfvepislktllfllllllivlfvsnvafgf 132
                    eiin+f+e+++lk++ ++++++li+++v+  af+ 
     CCE30743.1 337 EIINEFTETMHLKAWGVIVAIILICTTVNFSAFSR 371
                    ****************************8888875 PP

>> DUF3898  Domain of unknown function (DUF3898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.95   8.5e+03      64      79 ..     142     157 ..     140     159 .. 0.83
   2 ?   11.6   0.0   2.6e-05      0.23      19      67 ..     318     366 ..     309     373 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.95
     DUF3898  64 slqfekgvsPvellkP 79 
                 sl + k +sP+  + P
  CCE30743.1 142 SLRYGKSTSPIKKHTP 157
                 688999****998877 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.6e-05
     DUF3898  19 veqkPeielklkldeievkalladfGeklhiakvndrYvlliegdslqf 67 
                 + q P++ +++k+   +v  ++ +f e++h+   +   ++++   +++f
  CCE30743.1 318 MRQDPDAIMRVKVTAKQVAEIINEFTETMHLKAWGVIVAIILICTTVNF 366
                 6789***************************877766666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3424.56
//
Query:       CCE30744.1  [L=792]
Description: related to nitrate assimilation regulatory protein nirA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-23   83.1   0.2    2.6e-23   82.4   0.2    1.3  1  Fungal_trans     Fungal specific transcription factor domain
    1.3e-08   34.8  10.8    2.5e-08   33.9  10.8    1.5  1  Zn_clus          Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
       0.11   11.0   0.0       0.17   10.4   0.0    1.2  1  Kinetochor_Ybp2  Uncharacterised protein family, YAP/Alf4/glo


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.2   4.3e-27   2.6e-23       2     265 ..     288     531 ..     287     535 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 4.3e-27
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                    ++f + +p f  l k+ fl ++   +++  +y+sp+l++a lalG++fse++  + +++   +s    +f+ + + li  + ++   +l+++q+L 
    CCE30744.1 288 ALYFCWEYPTFASLSKEHFLQDF---RDGRPRYCSPILVNALLALGCRFSEQPMTRADANDPYSS--GDHFFKESQRLI--NEETDHHNLTTIQALG 377
                   57999999***************...*******************************99999987..99**********..88888888******** PP

  Fungal_trans  99 llelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlp......LPcdd 189
                   ++++ e  +++ +  +++ g  +rla+++gLhr +          l+ ee   r  ++w+aF lD  ++l +G  p   +s   l+      + + +
    CCE30744.1 378 IMSIREASCGRDSESWYYAGQSIRLAVEMGLHRVEDA--------LDDEELAVRSATFWGAFALDHAWSLATGSLPQ--CSLFPLLppkpgiIDNVE 464
                   ********************************99998........66777**************************5..566666655777666777 PP

  Fungal_trans 190 ddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnW 265
                   + lw  +++++  l++   +++++ r+ ++ +  L++++++ +  l+s++k+l  r+l         ++++++ nW
    CCE30744.1 465 SSLWVPYTDDGAPLQRSC-EQPSNVRSVYKCFCELSELVHHSLYMLHSPGKPLTARELL--------RTYTQFLNW 531
                   889999999999999865.**********************9999*****999888776........555555555 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9  10.8   4.2e-12   2.5e-08       2      39 ..      70     106 ..      69     107 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 4.2e-12
                 S-HHHHHCT---STSSSS-HHHHHCT.HHHCCCCTCCCE CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkkln.leCtfysesskr 39 
                 aC++Crkk+ KCd+++P C++Ck+ + +eC+ y+ + ++
  CCE30744.1  70 ACTECRKKRAKCDGHNP-CGRCKSQEdVECV-YEIPVRQ 106
                 9****************.*************.9988765 PP

>> Kinetochor_Ybp2  Uncharacterised protein family, YAP/Alf4/glomulin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.8e-05      0.17     566     617 ..     675     735 ..     640     756 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2.8e-05
                      HHHHHHHHHHHHS-TTT.SSCCCTHHHHHHHTHHHHHHHHHHHHHHHHHHHH........- CS
  Kinetochor_Ybp2 566 aaLNllvvlkkkwdlev.lqlkkelekfekeyleplktllnsseaeleaeke........e 617
                      +aLN+l++l+kkw+ +v l  + ++++ e e++ p ++ ln++  +++ e+         +
       CCE30744.1 675 QALNILRYLAKKWNVDVeLKGQDLMAEDEDEIVRPFTSSLNFFAPNVKVEDSecdlglgkA 735
                      89************999**************************999987755555544440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 5799.78
//
Query:       CCE30745.1  [L=775]
Description: related to transcription factor SPT8 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-12   48.0   1.0       0.79   10.7   0.0    6.9  7  WD40          WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.047   14.0   0.0         11    6.4   0.0    3.4  4  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
       0.13   10.8   0.0        0.4    9.2   0.0    1.7  2  Cytochrom_D1  Cytochrome D1 heme domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0043        26      12      38 .]     125     151 ..     117     151 .. 0.82
   2 ?    2.7   0.0     0.045   2.7e+02      11      28 ..     202     219 ..     197     227 .. 0.83
   3 !    5.2   0.0    0.0074        44       4      34 ..     238     269 ..     235     273 .. 0.83
   4 ?   -3.5   0.0         3   1.8e+04       2      16 ..     278     293 ..     277     294 .. 0.72
   5 !   10.7   0.0   0.00013      0.79      21      38 .]     602     618 ..     573     618 .. 0.69
   6 !    9.7   0.0   0.00027       1.6      14      35 ..     637     660 ..     627     663 .. 0.78
   7 !    4.9   0.0    0.0087        52       6      37 ..     679     709 ..     673     710 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0043
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 s++++a  pd ++ ++G+ Dg +r +d
  CCE30745.1 125 SINAMAITPDLRYWITGGSDGYIRKYD 151
                 5999999999999778877****9665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.045
                 SSEEEEEEETTSSEEEEE CS
        WD40  11 ssvtslafspdgawlasG 28 
                 s+v+sla++++  wl+sG
  CCE30745.1 202 SPVYSLAVHSEALWLLSG 219
                 579*************99 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0074
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtv 34 
                 +  l  H + v+sl    d + ++sG++D+++
  CCE30745.1 238 IACLQQHkNAVSSLMLATDERSVLSGGWDKNI 269
                 5567889888****8888888899*****998 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 3
                 EEEEEEESS.SSEEEE CS
        WD40   2 qclrtltGH.ssvtsl 16 
                 +++r+++G  + ++s+
  CCE30745.1 278 NTIRSFDGSgGQISSI 293
                 6788999885558777 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00013
                 TSSEEEEEETTSEEEEEE CS
        WD40  21 dgawlasGsdDgtvriWd 38 
                    + +s+  Dgt+riWd
  CCE30745.1 602 TTIF-LSSAIDGTIRIWD 618
                 3333.57899*******9 PP

  == domain 6  score: 9.7 bits;  conditional E-value: 0.00027
                 EEEE..EETTSSEEEEEETTSEEE CS
        WD40  14 tsla..fspdgawlasGsdDgtvr 35 
                 ++++  +spdg+++ +G ++gtv 
  CCE30745.1 637 WCMSacWSPDGNMIYAGRRNGTVE 660
                 566666***********99**995 PP

  == domain 7  score: 4.9 bits;  conditional E-value: 0.0087
                 EEESSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGHssvtslafspdgawlasGsdDgtvriW 37 
                   tG + v++++  p+g+ l+++s     r++
  CCE30745.1 679 FPTGSGAVSAVRSMPNGKHLVCAS-YDITRLY 709
                 556665699999*********999.6655555 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.026   1.5e+02      25      86 ..     234     292 ..     195     296 .. 0.80
   2 ?   -2.7   0.0       1.2   7.3e+03      54      81 ..     606     633 ..     601     640 .. 0.73
   3 ?    6.4   0.0    0.0018        11      44      68 ..     641     665 ..     638     670 .. 0.87
   4 ?   -1.4   0.0      0.49   2.9e+03      37      75 ..     682     719 ..     664     722 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.026
  ANAPC4_WD40  25 ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                  +g+r+  l  +++++ v+sL+   d++    +  d ++   d  +g++++s++ +  + +++
   CCE30745.1 234 EGKRIACL--QQHKNAVSSLMLATDERSVLSGGWDKNIFDWDLDTGNTIRSFDGSGGQ-ISS 292
                  45677777..788899999999999999999999999999999999999998766553.655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
  ANAPC4_WD40  54 avaysdgevrlldaesgkvvhslsvkse 81 
                    +  dg++r+ d    + v  + +k+ 
   CCE30745.1 606 LSSAIDGTIRIWDKRVPNAVARIATKHG 633
                  5677899***999888888877777665 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0018
  ANAPC4_WD40  44 LaWkpdgklLavaysdgevrlldae 68 
                   +W+pdg+++  +  +g+v+ +d  
   CCE30745.1 641 ACWSPDGNMIYAGRRNGTVEEYDLR 665
                  58*****************988865 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.49
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                   ++ v++++  p+gk L+ a  d   rl+d  +++  ++
   CCE30745.1 682 GSGAVSAVRSMPNGKHLVCASYD-ITRLYDLRDTRAFKH 719
                  567788888999***99988766.567888777766665 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       0.3   1.8e+03      17      64 ..     227     274 ..     220     283 .. 0.80
   2 ?    9.2   0.0   6.7e-05       0.4      14      96 ..     611     703 ..     602     720 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.3
                   EEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEES CS
  Cytochrom_D1  17 valldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDL 64 
                   ++ +  d+ + +a l+ + +   s + a d+R v+  g D ++   DL
    CCE30745.1 227 LQSIRHDEGKRIACLQQHKNAVSSLMLATDERSVLSGGWDKNIFDWDL 274
                   55667788888999999999999999******9999999988877777 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 6.7e-05
                   GTEEEEEETTT-SEEEEEE-STTE...EEEEE-TT.SSEEEEEETTSEEEEEESSSSS......EEEEEE-SSEEEEEEE-.-TTSEEEEEEE CS
  Cytochrom_D1  14 agkvalldgdskeilavletgyal...HisrvfasdgRyvyvigRDgkvtliDLwake......ivaevkiGlnarsvavS.qddryvivgnY 96 
                   +g +++ d    + +a++ t++ +    +s   ++dg  +y   R g+v+ +DL + +         +   G+ a s   S  ++++++ ++Y
    CCE30745.1 611 DGTIRIWDKRVPNAVARIATKHGVppwCMSACWSPDGNMIYAGRRNGTVEEYDLRHARrgwepeRALRFPTGSGAVSAVRSmPNGKHLVCASY 703
                   799999999999**********99776789999*********************766656443244455567777776666778888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.37s 00:00:01.22 Elapsed: 00:00:00.46
# Mc/sec: 5011.95
//
Query:       CCE30746.1  [L=79]
Description: uncharacterized protein CPUR_04595 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 638.51
//
Query:       CCE30747.1  [L=781]
Description: related to NAM7-nonsense-mediated mRNA decay protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-29  101.2   0.0    9.2e-29  100.5   0.0    1.3  1  AAA_12         AAA domain
    3.1e-24   86.2   0.4    2.9e-23   83.0   0.4    2.0  1  AAA_11         AAA domain
    1.9e-10   41.2   0.0    6.7e-09   36.2   0.0    2.7  2  AAA_19         AAA domain
    1.3e-09   38.0   0.0    6.4e-07   29.3   0.0    2.3  2  AAA_30         AAA domain
     0.0004   20.4   0.0    0.00069   19.7   0.0    1.3  1  ResIII         Type III restriction enzyme, res subunit
     0.0035   16.9   0.0       0.03   13.9   0.0    2.1  2  UvrD-helicase  UvrD/REP helicase N-terminal domain
     0.0045   17.4   0.0      0.013   15.9   0.0    1.7  1  AAA_16         AAA ATPase domain
  ------ inclusion threshold ------
      0.017   15.5   0.0      0.067   13.6   0.0    2.0  1  AAA            ATPase family associated with various cellular
      0.088   12.0   0.0       0.39    9.9   0.0    2.0  2  DUF2075        Uncharacterized conserved protein (DUF2075)
       0.17   11.3   0.0       0.31   10.5   0.0    1.4  1  PhoH           PhoH-like protein


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.0   5.1e-32   9.2e-29       2     198 ..     381     573 ..     380     574 .. 0.90

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 5.1e-32
      AAA_12   2 erSlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekke..ksyiNeeEaelvvkl 98 
                 + S+ferl+k +  +  +L +q Rm p + + + +lfY +   d++s++k +++    ++  l+pl +++ + +e++++  +  +++ N +Ea+++v +
  CCE30747.1 381 NISMFERLIKIG-LSHGTLLEQRRMIPPLREVV-QLFYPDV-IDSPSISKLPTS----VPGVLQPLWWFQHDWQEMRSRIGSdcTTIENVMEARMIVLF 472
                 57**********.88889999*********965.7999976.577888888888....99***********9999999887788*************** PP

      AAA_12  99 vekllkkgseeerkkigvitpYraqvellkkklkekeee...ksekeievntvdgfQGrekdviilslVRsnekkeigflkderrlNValTRAksklii 194
                 v++l++    +  ++i  +t+Y+ q++l++ +l++++     ++++e +v tvdgfQG+e+d+i+lslVR  +++  gfl++ +r  Val+RAk  l+i
  CCE30747.1 473 VQYLVEIQGIH-PTRITMLTFYNGQARLIRGELARNACLagrAPSSEWSVRTVDGFQGEENDFILLSLVRG-PNGVPGFLASDNRAIVALSRAKLGLYI 569
                 **********9.9*********************8765400044455***********************9.78999********************** PP

      AAA_12 195 vGnk 198
                 +G++
  CCE30747.1 570 FGHR 573
                 **86 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.4   1.6e-26   2.9e-23       2     256 ..       8     366 ..       7     368 .. 0.82

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 1.6e-26
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeeri 100
                 l++sq+ a+++a se+  +liqGPPGtgKT+t   +l++l+   +  +   ++  i v a++N AvD+ll+++++        + +  +vR+g+ +   
  CCE30747.1   8 LDKSQLLAFNKATSEEV-ALIQGPPGTGKTFTSNVILQSLVD--TFGMPDLPDSPIIVVAQTNHAVDQLLKKYID-------DRGSDTVVRLGRRS--- 93 
                 899***********995.************999999999944..368899*************************.......888899********... PP

      AAA_11 101 seavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeek.................................................. 149
                 s+++k++sl e++ ++++++   q +k+ + +l+++ k l++  +++ +                                                  
  CCE30747.1  94 SDELKAFSLGERMYNSKNAR--GQSTKQFTTKLKSIIKCLENAGNQAIEvvnaetlknfgvlsaaqydslvdddewessgaqvqekhddplsrwlgdad 190
                 9*******999999999885..67777788888888888877777777788888899999999999999999999999999999999999999999999 PP

      AAA_11 150 ..................................................................eklkkskekskskleqerrklkkerkelskele 182
                                                                                   +  + ++  + ++ +  + +l ++ +e+ k ++
  CCE30747.1 191 ltparqqeevqeegqikdrrwrgaqisfvpledsaaafpnegyarhllerstnlydvrpekrpyvyK-FLLTQLRDIRNPRSGLVELLASYTENCKVMK 288
                 9999999999999999999999999*****************************9777666655532.2222222222222233333333444444555 PP

      AAA_11 183 eaeesleeevldea..eivltTlsga..gsklleklakkfdvviIDEAaqavEpstliPlrlga..kkvvLvGDpkQLpa 256
                 e+++  +++++ +a  ++v++T +g    ++ l +l  + +v++  EAa   E+ t+ + ++ +  ++++++GD++QL++
  CCE30747.1 289 EVKDMNRAQFILRAgfKVVACTATGLlkHKRILAQL--RPRVLLMEEAAEIREADTIAACLCFPtlEHLIMLGDHQQLQP 366
                 55555557777776558********95344556666..9********************9877778************99 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   3.8e-12   6.7e-09       3     143 ..      14     366 ..      12     369 .. 0.89
   2 ?    1.7   0.0      0.16   2.9e+02      25      56 ..     467     498 ..     465     529 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 3.8e-12
      AAA_19   3 eave.alkekvllvtaGpGtGKTrvlkhivallvelggvkp...eeillvaftgrAakelrerlaalgaeatTiHrlal.................... 77 
                  a + a++e+v l+ ++pGtGKT + + i++ lv++ g++     +i++va t++A+++l ++    ++  +T+ rl+                     
  CCE30747.1  14 LAFNkATSEEVALIQGPPGTGKTFTSNVILQSLVDTFGMPDlpdSPIIVVAQTNHAVDQLLKKY-IDDRGSDTVVRLGRrssdelkafslgermynskn 111
                 567668999***************************998667779***************9999.4455689999998899999999999999999999 PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  CCE30747.1 112 argqstkqfttklksiikclenagnqaievvnaetlknfgvlsaaqydslvdddewessgaqvqekhddplsrwlgdadltparqqeevqeegqikdrr 210
                 99999999999999999999999999999999999999999********************************************************** PP

      AAA_19  78 ...........................................................................................ldfddllt 85 
                                                                                                             +f+    
  CCE30747.1 211 wrgaqisfvpledsaaafpnegyarhllerstnlydvrpekrpyvykflltqlrdirnprsglvellasytenckvmkevkdmnraqfilrAGFKVVAC 309
                 ***************************************************************************999999999999999988888888 PP

      AAA_19  86 ealelleeaeeekklqeeellivDEfqdvdelqyrLlkallgek.kklllvGDpdQliy 143
                 +a +ll++++   +l +  +l+  E+ ++ e   ++   l+ ++ ++l+++GD++Ql +
  CCE30747.1 310 TATGLLKHKRILAQL-RPRVLLMEEAAEIREAD-TIAACLCFPTlEHLIMLGDHQQLQP 366
                 888999987888888.8889********99654.4555555556688*********865 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.16
      AAA_19  25 rvlkhivallvelggvkpeeillvaftgrAak 56 
                 r+++  v++lve++g++p +i++++f +  a+
  CCE30747.1 467 RMIVLFVQYLVEIQGIHPTRITMLTFYNGQAR 498
                 789999*******************9765555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   3.6e-10   6.4e-07       2      76 ..       8      89 ..       7     127 .. 0.80
   2 !    6.4   0.0    0.0037       6.6      41     130 ..     266     366 ..     258     368 .. 0.65

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 3.6e-10
      AAA_30  2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa.g......grviglAptgkaAkvLaee.lgi.eastiakl 76
                l+++Q  a++++++++  va+++Gp+GtGKt++ +++ + + +  g       ++i++A t+ a ++L ++ ++   ++t+ +l
  CCE30747.1  8 LDKSQLLAFNKATSEE--VALIQGPPGTGKTFTSNVILQSLVDTfGmpdlpdSPIIVVAQTNHAVDQLLKKyIDDrGSDTVVRL 89
                7899*****9998887..9******************6666666599********************76540332345566555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0037
      AAA_30  41 aweaaggrviglAptgkaAkvLae.............elgieastiakllkrlk..grarlepgtllivDEagmvdtkqlaallkaaekagakvilvGD 124
                 + + + g v +lA+  +  kv++e             ++ + a t   llk  +  +  +l+  ++l+  Ea+ +  +++ a      +   ++i++GD
  CCE30747.1 266 IRNPRSGLVELLASYTENCKVMKEvkdmnraqfilraGFKVVACTATGLLKHKRilA--QLR-PRVLLMEEAAEIREADTIAACLCFPT-LEHLIMLGD 360
                 555555566777777777777774444444444443366678999999996666431..333.389999**998866666555555555.689****** PP

      AAA_30 125 erQlas 130
                 ++Ql++
  CCE30747.1 361 HQQLQP 366
                 ****96 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.8e-07   0.00069      22      97 ..      20     130 ..       4     168 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.8e-07
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S..........-EEEEESSHHHHHHHHHHG....................GGGTGG....GEEEESSS-B- CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkee.....kflflvprkslleqtleef....................kkflseaykeigkkvsgdkkk 95 
                 + ++ +li+ + GtGKT+++  + ++l   ++        +++++++++ ++q+l+++                    k f+  +++ ++k+ +g++ k
  CCE30747.1  20 TSEEVALIQGPPGTGKTFTSNVILQSLVDTFGMPdlpdsPIIVVAQTNHAVDQLLKKYiddrgsdtvvrlgrrssdelKAFSLGERMYNSKNARGQSTK 118
                 5567889**********************9998899999****************99988888888888887777776444444444455555555444 PP

                 -........... CS
      ResIII  96 a..........k 97 
                 +           
  CCE30747.1 119 QfttklksiikC 130
                 422222222333 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.7e-05      0.03       5     169 ..      12     221 ..       8     364 .. 0.65
   2 ?    0.6   0.0      0.17   3.1e+02      32      67 ..     471     506 ..     463     528 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
                    HHHHHHS..-SSEEEEEE-TTSSHHHH...HHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH............................ CS
  UvrD-helicase   5 qreaias..lggpilveAsAGsGKTfv...laerilrlikeeeiepdrilvvTFTnkAaeElkeRiee............................ 67 
                    q  a ++  +++  l+   +G+GKTf+   + +  +          + i+vv  Tn A + l ++                               
     CCE30747.1  12 QLLAFNKatSEEVALIQGPPGTGKTFTsnvILQSLVDTFGMPDLPDSPIIVVAQTNHAVDQLLKKYIDdrgsdtvvrlgrrssdelkafslgermy 107
                    55566555567888999********97111444444444444444555************9877766669****9999999999999998888666 PP

                    HHHHCCHHCTT-H..HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHHHH.HCCHHHHHHHHHSC.HSHTTTTHHHHHHHHHHH CS
  UvrD-helicase  68 alkkaeqessdde..rlrlalqnlseanisTlHsfcqkilkkeanrigldpnfrildeedee.dlkqqellkellek.saddslnldkkkleklik 159
                      k+a+ +s ++   +l+   + l++a  +++  ++ ++lk+    +  + +  + d+e e+  +++qe   + l +   d++l+ + ++ e + +
     CCE30747.1 108 NSKNARGQSTKQFttKLKSIIKCLENAGNQAIEVVNAETLKNFGVLSAAQYDSLVDDDEWESsGAQVQEKHDDPLSRwLGDADLTPARQQEEVQEE 203
                    555555544444388999999999999999999999999999999999888888888887665455555555555444334444555555554445 PP

                    HHHCCCCCH........H CS
  UvrD-helicase 160 elsksrnik........k 169
                      +k+r ++         
     CCE30747.1 204 GQIKDRRWRgaqisfvpL 221
                    555555555444444440 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.17
                    HHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH CS
  UvrD-helicase  32 erilrlikeeeiepdrilvvTFTnkAaeElkeRiee 67 
                      + +l++ ++i+p+ri ++TF n  a+ ++  +++
     CCE30747.1 471 LFVQYLVEIQGIHPTRITMLTFYNGQARLIRGELAR 506
                    45668899999***********99988877776665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.3e-06     0.013      20     131 ..      18     132 ..       5     142 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.3e-06
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekd.........ggiflrgkcdqlesaipysalaqalareellrqllde....aesaeleawrekleeal 105
                 ++ ++e+ l+ G++G+GK+   + +l++l ++          +i++++                   +++ + qll +      s+ + +  ++  ++l
  CCE30747.1  18 KATSEEVALIQGPPGTGKTFTSNVILQSLVDTfgmpdlpdsPIIVVAQ-------------------TNHAVDQLLKKyiddRGSDTVVRLGRRSSDEL 97 
                 4455699********************999984333333321222222...................22333333333222233333333333344444 PP

      AAA_16 106 a.........avpelagaeasrllellkrllalls 131
                 +          +++++g++ +++  +lk++++ l+
  CCE30747.1  98 KafslgermyNSKNARGQSTKQFTTKLKSIIKCLE 132
                 44446666667788888888888888888885555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.8e-05     0.067       2      26 ..      26      50 ..      25      89 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.8e-05
                EEESSTTSSHHHHHHHHHHHHTHEE CS
         AAA  2 llyGppGtGKTllakavakelgvef 26
                l+ GppGtGKT + + + ++l  +f
  CCE30747.1 26 LIQGPPGTGKTFTSNVILQSLVDTF 50
                789***************9984333 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00022      0.39       2      51 ..      23      78 ..      22     122 .. 0.70
   2 ?   -1.1   0.0      0.47   8.4e+02     344     360 ..     554     570 ..     552     572 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00022
     DUF2075  2 avvlVtGvaGtGKtvvllnllael......eddeeertavylsvNhplvlvlreal 51
                +v l++G +GtGKt   + +l  l       d  +    v++  Nh+  + l++ +
  CCE30747.1 23 EVALIQGPPGTGKTFTSNVILQSLvdtfgmPDLPDSPIIVVAQTNHAVDQLLKKYI 78
                689***********988888887755555444445555555555666666665555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.47
     DUF2075 344 NayrVLLtRGrkGlyiy 360
                 N+  V L+R+  Glyi+
  CCE30747.1 554 NRAIVALSRAKLGLYIF 570
                 777899**********9 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00017      0.31       2      36 ..       5      39 ..       4      49 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
                ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHH CS
        PhoH  2 ikpktkeQkeylealkkndivfaiGpaGtGKtyla 36
                ++  +k+Q  +++  +++++  + Gp GtGKt+ +
  CCE30747.1  5 VRSLDKSQLLAFNKATSEEVALIQGPPGTGKTFTS 39
                6778899999999999****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 5344.98
//
Query:       CCE30748.1  [L=179]
Description: uncharacterized protein CPUR_04597 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1493.53
//
Query:       CCE30749.1  [L=630]
Description: uncharacterized protein CPUR_04598 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   15.4   5.4       0.92   10.0   0.8    3.5  3  zf-met     Zinc-finger of C2H2 type
      0.063   14.1  19.2      0.077   13.9   1.6    4.2  3  zf-C2H2_4  C2H2-type zinc finger
        2.1    8.9  17.4       0.14   12.7   1.1    3.7  3  zf-C2H2    Zinc finger, C2H2 type
        2.1    8.2   8.7        0.8    9.6   3.9    2.3  2  ZZ         Zinc finger, ZZ type


Domain annotation for each model (and alignments):
>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.8    0.0002      0.92       1      20 [.     257     276 ..     257     277 .. 0.95
   2 ?    5.5   0.1    0.0054        24       6      19 ..     293     306 ..     292     306 .. 0.99
   3 ?   -2.1   0.0       1.3   5.8e+03      14      20 ..     421     427 ..     420     428 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0002
      zf-met   1 fyCelCnvtfnsesqlksHl 20 
                 ++C  C ++f+ + ++k H 
  CCE30749.1 257 YWCTSCETSFKRKYDWKRHE 276
                 8******************5 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0054
      zf-met   6 CnvtfnsesqlksH 19 
                 Cn++f + +++++H
  CCE30749.1 293 CNRSFWGSNSFNQH 306
                 ************** PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.3
      zf-met  14 sqlksHl 20 
                 +ql++Hl
  CCE30749.1 421 GQLQDHL 427
                 89****9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.6   1.7e-05     0.077       1      22 [.     257     278 ..     257     280 .. 0.90
   2 ?    9.1   2.7    0.0006       2.7       1      24 []     286     311 ..     286     311 .. 0.94
   3 ?   -0.3   0.9       0.6   2.7e+03       2      23 ..     333     354 ..     332     355 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkt 22 
                 ++C+ C +sF++k++++rH   
  CCE30749.1 257 YWCTSCETSFKRKYDWKRHEDE 278
                 89*****************865 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0006
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkthH 24 
                 ++Cp   C++sF  ++++++H k+ H
  CCE30749.1 286 YPCPEpgCNRSFWGSNSFNQHHKQCH 311
                 7999999**************99988 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.6
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkth 23 
                  C +C++  + +++   H+++h
  CCE30749.1 333 ACGFCSALHPARERHVEHVARH 354
                 6999998888777777788887 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.1   3.1e-05      0.14       3      23 .]     259     280 ..     257     280 .. 0.89
   2 ?    4.5   3.7     0.012        53       1      23 []     286     311 ..     286     311 .. 0.93
   3 ?   -2.6   2.9       2.2   9.8e+03       2       8 ..     309     315 ..     308     319 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.1e-05
                 ETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                 C+ C  sFkrk++ krH    H
  CCE30749.1 259 CTSCETSFKRKYDWKRHEDEfH 280
                 999**************76655 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.012
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 y+Cp  +C++sF  + ++++H +  H
  CCE30749.1 286 YPCPepGCNRSFWGSNSFNQHHKQcH 311
                 89**********99999999999877 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.2
                 EETTTTE CS
     zf-C2H2   2 kCpdCgk 8  
                 +C++C+ 
  CCE30749.1 309 QCHGCKT 315
                 7999975 PP

>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.13   5.8e+02      19      38 ..     247     267 ..     240     273 .. 0.66
   2 ?    9.6   3.9   0.00018       0.8       4      34 ..     307     337 ..     304     346 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
                 EEEESSSSS-EE-HHHHHH.. CS
          ZZ  19 RyhclrcsdYDLCqsCfst.h 38 
                  ++++  ++   C sC+++ +
  CCE30749.1 247 NVSNANRQNIYWCTSCETSfK 267
                 556666666667999998843 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00018
                 -EE-TTT-S..EESSEEEESSSSS-EE-HHH CS
          ZZ   4 kytCdgCseapligvRyhclrcsdYDLCqsC 34 
                   +C+gC+ +p+++ +++ lr + Y  C  C
  CCE30749.1 307 HKQCHGCKTCPHAEKVVKYLRKRKYWACGFC 337
                 568******************9999888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       975  (0.0543812); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4148.55
//
Query:       CCE30750.1  [L=43]
Description: uncharacterized protein CPUR_04599 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 337.47
//
Query:       CCE30751.1  [L=386]
Description: related to peroxisomal membrane protein peroxin 16 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.4e-140  465.4   1.0   1.1e-139  465.2   1.0    1.0  1  Pex16     Peroxisomal membrane protein (Pex16)


Domain annotation for each model (and alignments):
>> Pex16  Peroxisomal membrane protein (Pex16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  465.2   1.0  5.9e-144  1.1e-139       2     324 .]      27     379 ..      26     379 .. 0.97

  Alignments for each domain:
  == domain 1  score: 465.2 bits;  conditional E-value: 5.9e-144
       Pex16   2 aYekfvlknasqvsqiEstlrsltyilpgrfrdaeiasEalysllnLlslyhDslLeravks.....ppseharytrawtkksklyrrvalvLqvveyt 95 
                 +Y++f++kna+qv qiEs+lrsltyi+pgrfrdaeiasE+++s+++LlslyhD+lL+ra+++     p+++h+rytr+w++ks+lyrr+a+vLq+v yt
  CCE30751.1  27 MYDDFITKNAGQVGQIESALRSLTYIVPGRFRDAEIASESIHSGVQLLSLYHDTLLSRALSRlpvssPRTAHSRYTRFWSQKSTLYRRIAMVLQMVIYT 125
                 7*********************************************************9977999999999**************************** PP

       Pex16  96 elllEmaakrklGekgrWrvvvlieaiKavlRllLlrltksrpllspplperevdpeeleeeee.................................kk 161
                 ell+Em+akrk Gek+rW++++lieaiKa++RllLlr+t+srpl++pplper ++pe+++e+                                   ++
  CCE30751.1 126 ELLCEMTAKRKRGEKSRWKLIILIEAIKALCRLLLLRVTRSRPLVTPPLPERGLIPEDENEDAVpdggeealrqigaadldadlvhisameklkpayEQ 224
                 *****************************************************9999888777699********************************* PP

       Pex16 162 ewtlkrtgrvlpslassgdissyllskvltaddikpptkllrrlkgsaqlAEvlyilrPlvyvlalrrygrr.swkPwllslalellsrqlrklrtkkk 259
                 +w+++rtg++lpsl++++dissylls+vlta+dikp+++ll++l+gs+++AEvl+il+Pl+y++al+r +++ sw+Pwl+++a+e+++rqlr+    ++
  CCE30751.1 225 KWKMPRTGMSLPSLPDPSDISSYLLSRVLTAEDIKPANQLLNKLQGSSHAAEVLHILAPLIYAIALARSKNKrSWTPWLVGIAVEYAARQLRD----RS 319
                 *******************************************************************865546********************....56 PP

       Pex16 260 kslsalereelsrRklallwyllRgpfyekvtkpkleglakrlesvpllglvgglledylplwde 324
                    ++lere++++R+++++w+++Rg+fye++tk+ + g+++r+++     +v+g+ledy++lw++
  CCE30751.1 320 LRTTTLEREQWNKRAWEMAWWAMRGAFYENMTKGLIGGVRARMPG-----FVAGILEDYEYLWEN 379
                 788******************************************.....*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2927.07
//
Query:       CCE30752.1  [L=573]
Description: uncharacterized protein CPUR_04601 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00018   20.5   1.5      0.042   12.7   0.2    2.2  2  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1   0.00015       2.6      33     117 ..       6      91 ..       2     103 .. 0.84
   2 !   12.7   0.2   2.3e-06     0.042     197     336 ..     317     468 ..     304     486 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00015
  Fungal_trans_2  33 lsnkallhallalsafhl..qskgpkdslereakrykslalkelqealaelsstlsrnekykdiLaaiLllcsieissgdvsdwrvh 117
                     +++  l    +a++a+    q+k+p+      ++r++  ++ + +eal+  s+ ++++e + + L + Ll + +e   g++     h
      CCE30752.1   6 MEETTLRFGAMAVGALRKayQTKSPSAE-LGHDNRHYLNSVIYYCEALRLQSKAEPTKEGLRTALLSSLLFICFEAQRGNMPAALKH 91 
                     5666777888999999999888888888.677888888889999************9999999999999999999999998766666 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.3e-06
  Fungal_trans_2 197 illiseisrLarekrsarkdseleplsileeaseleqrllswkprs.sdlepdldeterasslskdltelfrlaaliyly.rlv.......lglp 282
                     + l+ +  +L r + + + + +l+  + + ++ ++ ++ ++w +r+  ++ep +++  r++  +  +  l + +++i ++  ++       ++++
      CCE30752.1 317 LTLLTSQLCLTRAVSNLDVERKLSSVKKQPRIGNFVTESRHWLSRWiEAFEPVYKAICREAITE-PHNYLSAMSLRIEYLiLCIystmprfSCFT 410
                     5555555666666666666666666667777777777777777776234555555555554444.344444444444333122222233334444 PP

  Fungal_trans_2 283 ps...spevqelvkkllellellpsspv.aiasLlWplFiaGceavdeddRdfvrrrl 336
                     +    +p+ +e+ + +  ll++ p+++   +++ +WplFi   ++ d+d R+   r+l
      CCE30752.1 411 AAkglTPRYREINRLAEILLRSRPNCGFaMDSGWTWPLFISSFSCRDPDVRQDAIRIL 468
                     44999999***9999999*********99*******************9998766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 4643.38
//
Query:       CCE30753.1  [L=697]
Description: uncharacterized protein CPUR_04602 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-09   36.1   3.3      1e-06   28.6   1.8    2.3  2  Glyco_hydro_17   Glycosyl hydrolases family 17
  ------ inclusion threshold ------
       0.15   11.6   0.0       0.25   10.9   0.0    1.3  1  DUF2140          Uncharacterized protein conserved in bacteri


Domain annotation for each model (and alignments):
>> Glyco_hydro_17  Glycosyl hydrolases family 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0   0.00045         4      28     198 ..     425     584 ..     418     596 .. 0.68
   2 !   28.6   1.8   1.2e-10     1e-06     234     309 ..     597     685 ..     590     689 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00045
  Glyco_hydro_17  28 kelrlyksdtevlkalaasnlevilnlpnsdlaele..sn.qskaavWvqdnvrpaaekvkikyiavgneispstsaakavflvpamanirnalt 119
                     +++ +++  t+ ++++ +++++ ++ l  + +  l+  ++ ++ ++vW  +n  + a +  +++  ++++  +   ++    +v  + ++r+++t
      CCE30753.1 425 RDVAVLSQLTNKIRLY-GTDCNQTQMLI-HAIDRLQlkNDvKIWLGVWQDKNTTTNARQ-LAQMWDILDQYGSEPFEG---VIVANEILFRKEMT 513
                     5677777777777765.67888887776.555544311331456777888887777777.334444444444444444...78888888888888 PP

  Glyco_hydro_17 120 aaglsnkikvstalaldildssyppsqstfreevkpvvdpivvflagtnspllvnvyPYfvysndpsnvsLdyalfqkq 198
                      ++l   i       ld ++s++  +    +++   + d +   l  ++ ++++n++P+f+ +++    s  y +++++
      CCE30753.1 514 VTQLGT-I-------LDGVRSNFSTKGIKLPVASSDLGDDWTADLGAESDYIMANIHPFFAGTSAEDAASWTYDFWTGK 584
                     888884.4.......44455555555555666666667888999****************9888878999999999886 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.2e-10
  Glyco_hydro_17 234 vvsEtGWPsdGs........tgaslenaatyveNlikkvkeGtpskpgkgietyvfalFdEnqKpees.....vekhfGvfkpdkslkY 309
                     ++sEtGWPs+G          ++s+  ++++++ +  ++++ +++  + g + + f++FdE +K          e ++G++  +++lk 
      CCE30753.1 597 IISETGWPSAGGkncgespvCTSSTPGSVASIDGMNTFMENWVCQALANGTNYFWFEAFDEPWKIRFNegdknWEDKWGLMDQNRKLKS 685
                     89********99887777665667888999**********************************643333566999*****99998875 PP

>> DUF2140  Uncharacterized protein conserved in bacteria (DUF2140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.8e-05      0.25       2      62 ..     329     391 ..     328     399 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.8e-05
     DUF2140   2 kWkwaFliLlalllllvav..vlvrvfapseestekssekekkseaeftitttkkqlnalink 62 
                 kWkwa +iL+ ++++ +++  v+  ++a +++s  + ++++++ +++ ++ ++ ++++al+n+
  CCE30753.1 329 KWKWAVIILAFIIVVGAIIggVVGSMIAGNKKSGGRGQSASDDLDKNGDLDINSSEIKALMNN 391
                 8********9887765554113333444444444488888999999*************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 5274.16
//
Query:       CCE30754.1  [L=290]
Description: uncharacterized protein CPUR_04603 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-10   39.4   0.0    7.9e-10   38.6   0.0    1.3  1  SRR1      SRR1


Domain annotation for each model (and alignments):
>> SRR1  SRR1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   4.4e-14   7.9e-10       2      53 ..     100     160 ..      99     161 .. 0.97

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 4.4e-14
        SRR1   2 vclGLGsfse.......sssaryQLAlllelveelkiessrs..vyaqDPvftevDkalLe 53 
                 vclG Gsf++       +++a +Q  ++ ++v+el+   + +  + +q+P ft++D+a+L+
  CCE30754.1 100 VCLGMGSFDPpdgaweaKRRAYIQYLVFEAMVQELETFFNTTihCTFQEPLFTDADTAFLT 160
                 9**************************************999*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2367.68
//
Query:       CCE30755.1  [L=230]
Description: uncharacterized protein CPUR_04604 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1893.68
//
Query:       CCE30756.1  [L=770]
Description: related to phospholipase a-2-activating protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-64  217.1   0.2    3.8e-64  216.6   0.2    1.2  1  PUL       PUL domain
    1.1e-42  144.9   0.1    1.9e-42  144.1   0.1    1.4  1  PFU       PFU (PLAA family ubiquitin binding)
    1.8e-28   98.2  11.1    1.1e-06   29.2   0.1    7.8  8  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> PUL  PUL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.6   0.2   6.3e-68   3.8e-64       1     277 []     499     765 ..     499     765 .. 0.92

  Alignments for each domain:
  == domain 1  score: 216.6 bits;  conditional E-value: 6.3e-68
         PUL   1 lPqktyllfkkanldkllkKlkelNakllsagqkdlalsdeelatLeallaale...ssseat.qlelllklltsWppedrfPalDLlRlllldprvsa 95 
                 lPqk+yl +++a+++++++Kl  +N++l+++g+kd+al++ e++ Le+l +ale   s   +  +l l+++++t+Wp+ dr++alDLlR++++ ++v++
  CCE30756.1 499 LPQKEYLNLSTAKYEAMFSKLSCVNKTLIASGRKDIALNPGEVTVLESLRQALEngqS--IPVqSLGLVVRMVTAWPYGDRLAALDLLRCIARFSSVAQ 595
                 8****************************************************76422..33369********************************99 PP

         PUL  96 yfaeeeggktissllslllssalsssapkalennrmlalRllaNlFssplgrelllskaeslletleslltssll....ssnknlrialatlllNlavl 190
                  f+++++g    + l+l+ + + s s+ +++en +m+ +R++aN+ +++ gr l++s+a++++++le++++ ++     + n+nl ia+at +lNl+vl
  CCE30756.1 596 -FSDAQHG----TALDLAMAFSIS-SDSDPNENAVMMGTRAVANMCATADGRSLIISRANNVVQYLERVVGVKGGnaigKFNRNLLIAVATSALNLSVL 688
                 .**99999....888886666664.7778999***************************************9999************************ PP

         PUL 191 lhkskde.lseedqvellaallealeeeeedsEalyRlLvAlGtlvyaapegealadlarvldakeivkkakkkafekeprvkevake 277
                 + k  ++ l+ +++ +l+ +l+ +l+e ++dsE+lyR L+AlGtl+ +      +++++  l++ +++  ak++a  +e+rvk va+e
  CCE30756.1 689 VDK--EKlLTPDQRRRLIVVLGAILDE-QSDSEVLYRGLIALGTLLVS------AKEVTVGLEVGAWIRGAKARA--TEDRVKAVADE 765
                 *63..33499***************98.******************99......5566777899*********66..********997 PP

>> PFU  PFU (PLAA family ubiquitin binding)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1   0.1   3.1e-46   1.9e-42       2     112 ..     357     467 ..     356     468 .. 0.98

  Alignments for each domain:
  == domain 1  score: 144.1 bits;  conditional E-value: 3.1e-46
         PFU   2 pGkkeGqvklvkeeegkveayqwsaaeekWekiGevvgseessskkkeyeGkeYDyvfdvdiedgkpplkLpynksdnpyeaAekFleknelsqsyleq 100
                 +G+keGqv+++ke++g+v+a++ws++++ W+++G+vv++++ss+++ ey+G++YD+vfdvdiedgkpplkLpyn s+npye A+kFl++nel+ syl++
  CCE30756.1 357 SGTKEGQVQMIKESNGNVTAHTWSMSQQLWINVGTVVDAAGSSGRRVEYNGEAYDFVFDVDIEDGKPPLKLPYNLSENPYERATKFLNDNELPLSYLDN 455
                 79************************************************************************************************* PP

         PFU 101 ivnFiikntkga 112
                 ++nFi+kntkga
  CCE30756.1 456 VANFITKNTKGA 467
                 *********986 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.7e-05       0.1       6      37 ..      10      41 ..       5      41 .. 0.78
   2 ?    2.6   0.0     0.046   2.8e+02      12      35 ..      62      90 ..      50      91 .. 0.69
   3 !   29.2   0.1   1.8e-10   1.1e-06       7      38 .]     106     138 ..     102     138 .. 0.89
   4 !   10.6   0.1   0.00014      0.84       5      38 .]     146     180 ..     142     180 .. 0.73
   5 !   15.0   0.0   5.8e-06     0.035      13      38 .]     201     230 ..     190     230 .. 0.86
   6 !   24.6   0.0   5.5e-09   3.3e-05       1      38 []     233     270 ..     233     270 .. 0.88
   7 ?    2.4   0.1     0.056   3.3e+02       2      37 ..     273     309 ..     272     310 .. 0.68
   8 ?   -3.2   0.0         3   1.8e+04      14      31 ..     520     533 ..     517     533 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37
                 l GH  +v+++ f ++   l s+s+Dgtvr W
  CCE30756.1 10 QLLGHeADVRAVTFASSAVVL-SASRDGTVRKW 41
                566**999****666666665.7899*****88 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.046
                SEEEEEEETTSSE.....EEEEETTSEEE CS
        WD40 12 svtslafspdgaw.....lasGsdDgtvr 35
                 v+s+af p ++      ++sG++D  + 
  CCE30756.1 62 YVNSIAFAPASSEfpnglVISGGKDTVIE 90
                389998666666667775679**998875 PP

  == domain 3  score: 29.2 bits;  conditional E-value: 1.8e-10
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l GH  +v+ l++ pdg++l+sG++Dg  riW+
  CCE30756.1 106 LIGHaHNVCTLDVAPDGSYLISGGWDGQARIWN 138
                 6799445*************************8 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00014
                 EEEESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH..ssvtslafspdgawlasGsdDgtvriWd 38 
                   l GH  + v+++ +  d++  ++G+ D+++r++d
  CCE30756.1 146 LMLAGHedKAVWGV-VALDKNTAVTGCADKNIRVFD 180
                 56789*75556555.3338888889*99******98 PP

  == domain 5  score: 15.0 bits;  conditional E-value: 5.8e-06
                 EEEEE....EETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtsla....fspdgawlasGsdDgtvriWd 38 
                 v++l+    ++p+ga +as+s Dgt+r+W+
  CCE30756.1 201 VRGLCkvpqNHPSGADIASASNDGTIRLWK 230
                 6888899999*******************6 PP

  == domain 6  score: 24.6 bits;  conditional E-value: 5.5e-09
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 gq++++l GH s+v+sl   ++g +++ +++D+tvr+W+
  CCE30756.1 233 GQQMGELHGHdSFVYSLTSLSSGELVS-AGEDRTVRVWK 270
                 688999****888****9999999985.566*******6 PP

  == domain 7  score: 2.4 bits;  conditional E-value: 0.056
                 EEEEEEESSSS...EEEEE.EETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGHss...vtsla.fspdgawlasGsdDgtvriW 37 
                 +c++t+t H +   v+ +a   + g+ + +G  Dg  r++
  CCE30756.1 273 ECIQTIT-H-PaisVWTVAaDAKTGDIV-TGASDGVARVF 309
                 5777764.8.334688887666677775.7855**99986 PP

  == domain 8  score: -3.2 bits;  conditional E-value: 3
                 EEEEEETTSSEEEEEETT CS
        WD40  14 tslafspdgawlasGsdD 31 
                 +++    +++++asG +D
  CCE30756.1 520 SCV----NKTLIASGRKD 533
                 577....88889998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 5952.68
//
Query:       CCE30757.1  [L=346]
Description: related to UNR-interacting protein STRAP (serine-threonine kinase receptor-associated protein) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-21   75.2   8.1    3.6e-07   30.8   0.1    5.5  6  WD40         WD domain, G-beta repeat
     0.0001   22.5   0.0        3.4    8.0   0.0    3.9  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    0.00036   19.6   0.0      0.079   11.9   0.0    2.2  2  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2   6.9e+03       7      19 ..      14      27 ..      11      45 .. 0.50
   2 !   20.1   0.3   1.5e-07   0.00087       4      38 .]      57      92 ..      54      92 .. 0.91
   3 !   12.9   0.0   2.6e-05      0.16       2      38 .]      97     134 ..      96     134 .. 0.78
   4 !   11.5   0.1   7.2e-05      0.43      10      35 ..     162     187 ..     157     188 .. 0.92
   5 ?   -1.5   0.0      0.95   5.7e+03      24      37 ..     230     242 ..     196     242 .. 0.62
   6 !   30.8   0.1     6e-11   3.6e-07       6      38 .]     295     328 ..     290     328 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
                EESS.SSEEEEEEE CS
        WD40  7 ltGH.ssvtslafs 19
                + GH  +v +++fs
  CCE30757.1 14 CHGHsRPVPHMSFS 27
                55773336555443 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.5e-07
                EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                ++t+ GH + v+  + spd +  a++s D t +iWd
  CCE30757.1 57 IGTFIGHkGAVWQARLSPDASNAATASADFTAKIWD 92
                689****655*************************9 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 2.6e-05
                 EEEEEEESSSS.EEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGHss.vtsla.fspdgawlasGsdDgtvriWd 38 
                 ++l+tl  H++ v+++a  +++++++a+G++ +++r++d
  CCE30757.1  97 ELLYTL-QHDHiVRAVAyPPDNSDLVATGGMEKKLRVFD 134
                 677888.486657****66666666789*********98 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 7.2e-05
                 S.SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtvr 35 
                 H ss+  +++ +d + ++++s D+t+r
  CCE30757.1 162 HnSSIKFICWTKDPNIVVTAS-DKTIR 187
                 8777*****************.****9 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 0.95
                 EEEEEETTSEEEEE CS
        WD40  24 wlasGsdDgtvriW 37 
                  la +   +tv++W
  CCE30757.1 230 VLAVSA-GKTVYFW 242
                 354444.7888888 PP

  == domain 6  score: 30.8 bits;  conditional E-value: 6e-11
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + +GH ++++s+afspd ++ a++s+Dgt+++W+
  CCE30757.1 295 VHKGHhGPIWSIAFSPDTKLYATASEDGTIKMWK 328
                 5579*899************99***********6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.82   4.9e+03      52      77 ..      36      61 ..      20      71 .. 0.78
   2 ?    1.2   0.0     0.078   4.6e+02      43      79 ..      69     105 ..      56     115 .. 0.78
   3 !    7.9   0.0   0.00064       3.8      30      75 ..     155     199 ..     111     211 .. 0.73
   4 !    8.0   0.0   0.00057       3.4      34      66 ..     296     328 ..     280     333 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.82
  ANAPC4_WD40 52 lLavaysdgevrlldaesgkvvhsls 77
                  +  a++dg+  l d  +g+ + ++ 
   CCE30757.1 36 YMISACKDGNPMLRDGVTGDWIGTFI 61
                 57789999999999988888877765 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.078
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  + + +pd +  a a +d + ++ d ++g+++ +l+ +
   CCE30757.1  69 QARLSPDASNAATASADFTAKIWDTHTGELLYTLQHD 105
                  55566777777899999999*********99998765 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.00064
  ANAPC4_WD40  30 wtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  +++ e  ++s+++ ++W +d ++ +v  sd ++r ld  s  +v++
   CCE30757.1 155 FEIGEGVHNSSIKFICWTKDPNI-VVTASDKTIRWLDLPSRACVKH 199
                  455888999*********99886.6788999******999988876 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.00057
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  ++++ + + s+a++pd kl a a +dg++++ +
   CCE30757.1 296 HKGHHGPIWSIAFSPDTKLYATASEDGTIKMWK 328
                  567889999********************9865 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0012       7.1     185     216 ..      62      93 ..      25      99 .. 0.87
   2 !   11.9   0.0   1.3e-05     0.079     182     215 ..     295     328 ..     280     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0012
    Ge1_WD40 185 eehsliveaafspdGtalatasedGevkffqv 216
                  ++  + +a +spd    atas+d + k +  
  CCE30757.1  62 GHKGAVWQARLSPDASNAATASADFTAKIWDT 93 
                 5566899*****************99999875 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.3e-05
    Ge1_WD40 182 lkieehsliveaafspdGtalatasedGevkffq 215
                 ++  +h  i + afspd    atasedG++k+++
  CCE30757.1 295 VHKGHHGPIWSIAFSPDTKLYATASEDGTIKMWK 328
                 444456689999*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2401.29
//
Query:       CCE30758.1  [L=70]
Description: uncharacterized protein CPUR_04607 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-16   58.0   0.0    7.7e-16   57.8   0.0    1.1  1  SecE      SecE/Sec61-gamma subunits of protein translocation 


Domain annotation for each model (and alignments):
>> SecE  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   4.3e-20   7.7e-16       2      55 .]      14      66 ..      13      67 .. 0.95

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 4.3e-20
                HCHHHHHHHHHCCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SecE  2 kFfkevkaElkKVtWPtrkEllkttvvVlvfvvimglflflvDlvfsklinlll 55
                +F+k+ +++++K+ +P+ kE++k++ +V  ++v+mg+++++v+l++ ++in +l
  CCE30758.1 14 QFLKDGVQFMNKCQKPDQKEFTKICQAVGTGFVVMGVVGYVVKLIH-IPINQIL 66
                8********************************************9.***7765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 497.25
//
Query:       CCE30759.1  [L=462]
Description: uncharacterized protein CPUR_04608 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-13   51.1   0.0    3.2e-07   29.8   0.0    2.1  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    5.2e-09   35.7   0.0    0.00022   20.6   0.0    2.3  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    4.7e-08   32.6   0.0      0.011   15.1   0.0    2.5  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    7.9e-05   21.5   0.0       0.23   10.1   0.0    2.2  2  HI0933_like    HI0933-like protein
    8.6e-05   22.6   0.0       0.24   11.4   0.0    3.3  3  NAD_binding_9  FAD-NAD(P)-binding
    0.00021   20.5   0.2       0.28   10.2   0.0    2.3  2  FAD_binding_2  FAD binding domain
     0.0005   19.4   0.9      0.023   14.0   0.1    2.3  2  FAD_binding_3  FAD binding domain
     0.0038   17.4   0.2      0.042   14.1   0.0    2.6  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0067   15.5   0.0      0.013   14.6   0.0    1.5  1  Lycopene_cycl  Lycopene cyclase protein
     0.0088   15.7   4.5       0.91    9.0   0.2    2.8  3  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.013   14.7   0.0      0.024   13.9   0.0    1.4  1  Thi4           Thi4 family
      0.046   13.1   0.0         10    5.4   0.0    2.4  2  GMC_oxred_N    GMC oxidoreductase
       0.15   11.7   0.0       0.97    9.1   0.0    2.1  2  ApbA           Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.9e-07   0.00054       1      42 [.       5      45 ..       5      50 .. 0.85
   2 !   29.8   0.0   2.3e-10   3.2e-07     118     265 ..     211     363 ..     200     412 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.9e-07
  K_oxygenase  1 eilDligiGiGpsnLsLailleevkkelkalfler.qpefaWh 42
                 e++D+i++G+Gp  L++a++l+e+    +alf ++ + +f+W 
   CCE30759.1  5 EVYDVIIVGAGPCGLAVAARLREHT--PAALFTDEeHRRFHWI 45
                 68**********************9..7788887515689996 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 2.3e-10
  K_oxygenase 118 eveevepdeeeeeelltveskdaegeeeelearnlvlgvG..tepkiPev...leklegkervvHsseylerkee.......llakkriaVvGsGqSa 203
                  +v+ v++d++   +++tv++      +++++a+++vl+vG  ++p+iP +     +l++  + +Hs ++ +  +          ++ ++++vG+G + 
   CCE30759.1 211 TVRGVSVDDQ---PMFTVKT-----PTKQFHAKAVVLAVGaaNQPEIPRMpsmPVDLHNLRQACHSLQIRTFPDPhlqqrmaAGKSTHVLIVGGGLTS 300
                  4777777775...6999998.....789************777887776521155677899*****998765433455566688899*********** PP

  K_oxygenase 204 aeifedllrrqkkvelklvtrsealeplddspf..vneifsPeyvdyfyslpeekreallkeqk 265
                  a++++ l+ r+  +++  v+r++   +  d ++  + ++ + e  + + + ++e+r ++ k  +
   CCE30759.1 301 AQLTD-LAIRKGVTKIWHVMRGPCRIKHFDVDLewMGKYKNTEQARFWLADSDEERLEIFKAAR 363
                  **975.5555666899999999988887777762245677888888888888888888887754 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.8e-05     0.038       1      23 [.       7      29 ..       7      51 .. 0.83
   2 !   20.6   0.0   1.6e-07   0.00022      75     166 ..     214     312 ..     130     333 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-05
                 CSEEEE--SHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqag 23
                 +dv+++G+Gp Gla+a +l+++ 
   CCE30759.1  7 YDVIIVGAGPCGLAVAARLREHT 29
                 69*****************9974 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.6e-07
                  CEEEEESCEEEEETEEECTCEEEEEESEEEE---E..EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T...........SEEEEES-SHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  75 vvkidpgkkkvklekkkegdeekiaydklvlAtGs..sprdlgipGvaenvgklvrtldsaealklkllp...........krivvvGgGyiGvElAa 159
                  +v++d ++  ++++      ++++ ++++vlA G+  +p ++ +p + +   +++r   +  +++    p            ++++vGgG+++  l+ 
   CCE30759.1 214 GVSVD-DQPMFTVK----TPTKQFHAKAVVLAVGAanQPEIPRMPSM-PVDLHNLRQACHSLQIRTFPDPhlqqrmaagksTHVLIVGGGLTSAQLTD 305
                  45554.33355553....3456899*********8677788888888.3333333333333333333333566677788999***********99998 PP

                  HHHHHT- CS
                  xxxxxxx RF
  Pyr_redox_2 160 alaklgk 166
                   + + g+
   CCE30759.1 306 LAIRKGV 312
                  8766655 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.7e-06     0.011       1      20 [.      10      29 ..      10      55 .. 0.84
   2 !   14.9   0.0   8.4e-06     0.012     103     147 ..     211     256 ..     205     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.7e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkag 20
                 iI+GaGP+Gla+a  l+++ 
   CCE30759.1 10 IIVGAGPCGLAVAARLREHT 29
                 8*************999876 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 8.4e-06
  Pyr_redox_3 103 eVesvkked.egfevetsketyeAkkviiAtGefdkPnklnipGee 147
                  +V+ v+ +d   f+v+t +++++Ak v++A G  ++P+ +++p   
   CCE30759.1 211 TVRGVSVDDqPMFTVKTPTKQFHAKAVVLAVGAANQPEIPRMPSMP 256
                  578888855157***********************99999888764 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00016      0.23       1      31 [.       7      37 ..       7      45 .. 0.85
   2 !    9.3   0.0    0.0003      0.42     118     170 ..     197     249 ..     166     272 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00016
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVlllek 31
                 +dvi++G+G+ Gl  A++++++    l  ++
   CCE30759.1  7 YDVIIVGAGPCGLAVAARLREHTPAALFTDE 37
                 59****************9998877776665 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0003
                  HHHHHT-EEE-S-.-EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-GGG CS
  HI0933_like 118 elkeagvklrlet.evksvekeedgkfrvktkseeeleadklvlAtGGlSiPkl 170
                     +++v + l+  +v++v+ +++  f+vkt  +++++a+++vlA+G +  P++
   CCE30759.1 197 DFIRKDVLMDLDYgTVRGVSVDDQPMFTVKT-PTKQFHAKAVVLAVGAANQPEI 249
                  5555555555553269999************.9**************9987764 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00017      0.24       2      20 ..      11      29 ..      10      64 .. 0.84
   2 !    6.1   0.0    0.0072        10     112     155 ..     200     243 ..     105     244 .. 0.66
   3 ?    1.1   0.0      0.25   3.5e+02       2      66 ..     293     363 ..     292     392 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
  NAD_binding_9  2 ivGaGprGlavlerLlara 20
                   ivGaGp Glav++rL ++ 
     CCE30759.1 11 IVGAGPCGLAVAARLREHT 29
                   9**************9996 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0072
  NAD_binding_9 112 pegvtvevhraevvdleeradgqavlladgaslaadaVvLAlGh 155
                    +++v +++  ++v  ++ +++ +  +++  ++++a+aVvLA+G 
     CCE30759.1 200 RKDVLMDLDYGTVRGVSVDDQPMFTVKTPTKQFHAKAVVLAVGA 243
                    556666666788999999999999999999************95 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.25
  NAD_binding_9   2 ivGaGprGlavlerLlara......kkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddp 66 
                    ivG+G + + +++  +++         + p +i+ fd +  + g+  +t+q++  l  +  +++++f+   
     CCE30759.1 293 IVGGGLTSAQLTDLAIRKGvtkiwhVMRGPCRIKHFDVDLEWMGKYKNTEQARFWLADSDEERLEIFKAAR 363
                    99999999999888888878887777788999999999999878888888888888888888888888765 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0002      0.28       1      21 [.       8      28 ..       8      43 .. 0.87
   2 !    7.9   0.0     0.001       1.4     156     205 ..     196     248 ..     109     272 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0002
                   SEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaea 21
                   Dvi++G+G  GLa A++++e+
     CCE30759.1  8 DVIIVGAGPCGLAVAARLREH 28
                   9****************9987 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.001
                    EEEEESEEEEEEEECTTEEEEEEEEET....TTTCEEEEEESEEEE-----GG.. CS
  FAD_binding_2 156 vdfqerteadeLivedgrvtGavvenp....esgrevrirakavvlatgGfgr.a 205
                     df  +  + +L  + g v+G+ v ++     +  + +++akavvla g++++ +
     CCE30759.1 196 SDFIRKDVLMDL--DYGTVRGVSVDDQpmftVKTPTKQFHAKAVVLAVGAANQpE 248
                    677777777777..568********98999844455579***********99841 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.6e-05     0.023       2      23 ..       7      28 ..       6      34 .. 0.92
   2 ?    3.9   0.1     0.019        27       2      26 ..     289     313 ..     288     319 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
                   EEEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLsea 23
                   +dV+IVGaGp+Gl  a  L+e+
     CCE30759.1  7 YDVIIVGAGPCGLAVAARLREH 28
                   69**************999886 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.019
                    EEEEEE--SHHHHHHHHHHHHTTHH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvr 26 
                    t VlIVG+G++ + l+ l  ++Gv 
     CCE30759.1 289 THVLIVGGGLTSAQLTDLAIRKGVT 313
                    89*********99999999999986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     3e-05     0.042       1      18 [.      11      28 ..      11      41 .. 0.90
   2 ?   -0.0   0.1      0.78   1.1e+03       1       9 [.     293     301 ..     293     315 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-05
                   EE--SHHHHHHHHHHHCC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka 18
                   IvGaG  Gl+ A++L+++
     CCE30759.1 11 IVGAGPCGLAVAARLREH 28
                   9***************97 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.78
                    EE--SHHHH CS
  NAD_binding_8   1 IvGaGlsGl 9  
                    IvG+Gl+++
     CCE30759.1 293 IVGGGLTSA 301
                    9****9986 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   9.5e-06     0.013       1      22 [.       8      29 ..       8      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.5e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteak 22
                   Dv+++GaGp gl++Aarl e  
     CCE30759.1  8 DVIIVGAGPCGLAVAARLREHT 29
                   9*****************5444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.2   0.00066      0.91       1      21 [.       8      28 ..       8      40 .. 0.83
   2 !    6.2   0.7    0.0049       6.8     168     227 ..     211     264 ..     193     297 .. 0.68
   3 ?   -0.7   0.3      0.62   8.6e+02       1      12 [.     290     301 ..     290     315 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00066
                EEEEECTSHHHHHHHHHHHHT CS
         DAO  1 dvviiGGGiiGlstAyeLarr 21
                dv+i+G+G  Gl++A  L ++
  CCE30759.1  8 DVIIVGAGPCGLAVAARLREH 28
                9*****************766 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0049
                 CEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEE CS
         DAO 168 evtgleeedgkvwgverttp.gendaadavVnaaGawsd.llgllkeldlpispvrgqvlvl 227
                 +v+g++ +d    +v  +tp   +++a+avV+a Ga  + ++   +++  p +pv  + l+ 
  CCE30759.1 211 TVRGVSVDDQPMFTV--KTPtK-QFHAKAVVLAVGAANQpEI---PRM--PSMPVDLHNLRQ 264
                 788887777777888..78844.5456********9988888...555..445554444444 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.62
                 EEEEECTSHHHH CS
         DAO   1 dvviiGGGiiGl 12 
                 +v+i+GGG + +
  CCE30759.1 290 HVLIVGGGLTSA 301
                 79******9865 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.7e-05     0.024      17      39 ..       6      28 ..       1      34 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
                EEEEEEE--SHHHHHHHHHHHHC CS
        Thi4 17 esDvvivGaGssGLtaayylakk 39
                + Dv+ivGaG++GL+ a  l ++
  CCE30759.1  6 VYDVIIVGAGPCGLAVAARLREH 28
                67*************99888665 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0084        12       1      23 [.       7      29 ..       7      53 .. 0.89
   2 ?    5.4   0.0    0.0075        10     227     262 ..     213     249 ..     196     252 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0084
  GMC_oxred_N  1 vdelveggGsagsvvAaRLsedp 23
                 +d +++g+G +g +vAaRL e+ 
   CCE30759.1  7 YDVIIVGAGPCGLAVAARLREHT 29
                 689****************9875 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0075
  GMC_oxred_N 227 ravGVeasdkkgt.vkrlvvaakevvvaaGalnsPql 262
                  r v+V+ + + +  + +++  ak vv+a Ga+n P++
   CCE30759.1 213 RGVSVDDQPMFTVkTPTKQFHAKAVVLAVGAANQPEI 249
                  444444444544477899999**************87 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00071      0.97       1      51 [.       9      63 ..       9      83 .. 0.78
   2 ?   -0.3   0.0      0.53   7.3e+02      93     150 ..     286     338 ..     280     340 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00071
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT...CEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseg...geei 51
                + i+GaG  G  +aa+L ++     + + +  r+  ++k G +++ ++   g+  
  CCE30759.1  9 VIIVGAGPCGLAVAARLREHTPAALFTDEEHrRFHWINKYGNNVSLKHvrsGKLS 63
                57***************9988888888888877777*****99998887433333 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.53
                 CTCEEEEEESSSSCHHHHHTTTSTTSEEEEEEEE-EEEEEETTEEEECS--EEEEEES CS
        ApbA  93 dpntvvlllqNGlgheeelrealpkprvlggvtthgatregpgevhhagkgeikigel 150
                 ++ t+vl++  Gl +++  + a+       gvt +  + +gp +++h + +  ++g++
  CCE30759.1 286 GKSTHVLIVGGGLTSAQLTDLAI-----RKGVTKIWHVMRGPCRIKHFDVDLEWMGKY 338
                 56677777777777776666555.....559999999999999999987776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3509.89
//
Query:       CCE30760.1  [L=159]
Description: uncharacterized protein CPUR_04609 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-06   25.1  12.4     0.0003   19.8   4.9    2.0  2  Calreticulin  Calreticulin family
     0.0026   17.5   8.3         38    4.1   0.0    6.2  7  RsgA_N        RsgA N-terminal domain
     0.0043   17.7   0.0    8.3e+02    0.9   0.0    6.1  7  LRR_2         Leucine Rich Repeat
  ------ inclusion threshold ------
      0.011   15.4   3.5         64    3.1   0.0    5.5  6  ANAPC10       Anaphase-promoting complex, subunit 10 (APC10)
        1.2    9.5   6.9    1.3e+02    3.0   0.1    3.9  6  GNAT_like     GCN5-related N-acetyltransferase like domain


Domain annotation for each model (and alignments):
>> Calreticulin  Calreticulin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   2.7   2.8e-06      0.01     217     270 ..      41      94 ..      27      98 .. 0.86
   2 !   19.8   4.9   8.3e-08    0.0003     202     271 ..      81     152 ..      79     157 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.8e-06
  Calreticulin 217 ekipDpeavkPedwdekapekipdpeavkPedWledepelipdpeaekPedwde 270
                   + i+D+++vkP+  d+   + i d+++vkP+  ++   +li+d++++kP+  d+
    CCE30760.1  41 SLISDKREVKPKVGDDAVWSLISDKREVKPKVGDDAVWSLISDKREVKPKVGDD 94 
                   5799*********************************************98777 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 8.3e-08
  Calreticulin 202 idDpedkkPedWddr..ekipDpeavkPedwdekapekipdpeavkPedWledepelipdpeaekPedwdee 271
                   i+D+++ kP+  dd   + i+D++++kPe  d+   + i d+++ kPe  ++   +li+d+++ kPe  d+ 
    CCE30760.1  81 ISDKREVKPKVGDDAvwSLISDKRETKPEVGDDAVWSLISDKREAKPEVGDDAVWSLISDKREAKPEVGDDA 152
                   99********999984468***********************************************988875 PP

>> RsgA_N  RsgA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.013        48      31      50 ..      27      46 ..      26      48 .. 0.82
   2 ?    3.1   0.1     0.022        77      31      50 ..      46      65 ..      45      68 .. 0.83
   3 ?    3.1   0.1     0.022        77      31      50 ..      65      84 ..      64      87 .. 0.83
   4 ?    2.9   0.1     0.026        94      31      49 ..      84     102 ..      83     104 .. 0.82
   5 ?    4.1   0.0     0.011        38      31      50 ..     103     122 ..     100     125 .. 0.84
   6 ?    1.9   0.0     0.053   1.9e+02      31      50 ..     122     141 ..     122     144 .. 0.80
   7 ?    0.9   0.0      0.11   3.9e+02      31      46 ..     141     156 ..     138     159 .] 0.80

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.013
      RsgA_N 31 kkkisplVGDrVefeleedg 50
                k++ +p VGD    +l +d+
  CCE30760.1 27 KRGAKPAVGDDAVWSLISDK 46
                6789******9998877665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.022
      RsgA_N 31 kkkisplVGDrVefeleedg 50
                k++++p VGD    +l +d+
  CCE30760.1 46 KREVKPKVGDDAVWSLISDK 65
                6789******9998887765 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.022
      RsgA_N 31 kkkisplVGDrVefeleedg 50
                k++++p VGD    +l +d+
  CCE30760.1 65 KREVKPKVGDDAVWSLISDK 84
                6789******9998887765 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.026
      RsgA_N  31 kkkisplVGDrVefeleed 49 
                 k++++p VGD    +l +d
  CCE30760.1  84 KREVKPKVGDDAVWSLISD 102
                 6789******998887766 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.011
      RsgA_N  31 kkkisplVGDrVefeleedg 50 
                 k++++p VGD    +l +d+
  CCE30760.1 103 KRETKPEVGDDAVWSLISDK 122
                 689*******9998877665 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.053
      RsgA_N  31 kkkisplVGDrVefeleedg 50 
                 k++ +p VGD    +l +d+
  CCE30760.1 122 KREAKPEVGDDAVWSLISDK 141
                 57889*****9998877665 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.11
      RsgA_N  31 kkkisplVGDrVefel 46 
                 k++ +p VGD    +l
  CCE30760.1 141 KREAKPEVGDDAVWSL 156
                 57889*****987665 PP

>> LRR_2  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.26   9.2e+02      14      23 ..      35      44 ..      34      44 .. 0.90
   2 ?    0.9   0.0      0.23   8.3e+02      14      23 ..      54      63 ..      52      63 .. 0.89
   3 ?    0.9   0.0      0.23   8.3e+02      14      23 ..      73      82 ..      71      82 .. 0.89
   4 ?    0.9   0.0      0.23   8.3e+02      14      23 ..      92     101 ..      90     101 .. 0.89
   5 ?    0.8   0.0      0.26   9.2e+02      14      23 ..     111     120 ..     110     120 .. 0.90
   6 ?    0.8   0.0      0.26   9.2e+02      14      23 ..     130     139 ..     129     139 .. 0.90
   7 ?    0.8   0.0      0.26   9.2e+02      14      23 ..     149     158 ..     148     158 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.26
       LRR_2 14 dedslekLLS 23
                ++d++++L+S
  CCE30760.1 35 GDDAVWSLIS 44
                799******9 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.23
       LRR_2 14 dedslekLLS 23
                ++d++++L+S
  CCE30760.1 54 GDDAVWSLIS 63
                799******9 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.23
       LRR_2 14 dedslekLLS 23
                ++d++++L+S
  CCE30760.1 73 GDDAVWSLIS 82
                799******9 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.23
       LRR_2  14 dedslekLLS 23 
                 ++d++++L+S
  CCE30760.1  92 GDDAVWSLIS 101
                 799******9 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.26
       LRR_2  14 dedslekLLS 23 
                 ++d++++L+S
  CCE30760.1 111 GDDAVWSLIS 120
                 799******9 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.26
       LRR_2  14 dedslekLLS 23 
                 ++d++++L+S
  CCE30760.1 130 GDDAVWSLIS 139
                 799******9 PP

  == domain 7  score: 0.8 bits;  conditional E-value: 0.26
       LRR_2  14 dedslekLLS 23 
                 ++d++++L+S
  CCE30760.1 149 GDDAVWSLIS 158
                 799******9 PP

>> ANAPC10  Anaphase-promoting complex, subunit 10 (APC10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.027        96      28      37 ..      37      46 ..      18      69 .. 0.58
   2 ?    0.9   0.0     0.087   3.1e+02      24      37 ..      71      84 ..      63      89 .. 0.83
   3 ?    0.6   0.0       0.1   3.7e+02      24      37 ..      90     103 ..      85     108 .. 0.85
   4 ?    3.1   0.0     0.018        64      22      37 ..     107     122 ..      92     127 .. 0.82
   5 ?    2.5   0.0     0.027        96      23      37 ..     127     141 ..     122     147 .. 0.85
   6 ?    0.5   0.0      0.11     4e+02      22      35 ..     145     158 ..     139     159 .] 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.027
     ANAPC10 28 eavwsvsSak 37
                +avws+ S k
  CCE30760.1 37 DAVWSLISDK 46
                4445444443 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.087
     ANAPC10 24 eigkeavwsvsSak 37
                 +g++avws+ S k
  CCE30760.1 71 KVGDDAVWSLISDK 84
                699*******9987 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.1
     ANAPC10  24 eigkeavwsvsSak 37 
                  +g++avws+ S k
  CCE30760.1  90 KVGDDAVWSLISDK 103
                 699*******9987 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.018
     ANAPC10  22 lreigkeavwsvsSak 37 
                 + e+g++avws+ S k
  CCE30760.1 107 KPEVGDDAVWSLISDK 122
                 569********99987 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.027
     ANAPC10  23 reigkeavwsvsSak 37 
                  e+g++avws+ S k
  CCE30760.1 127 PEVGDDAVWSLISDK 141
                 69*********9987 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.11
     ANAPC10  22 lreigkeavwsvsS 35 
                 + e+g++avws+ S
  CCE30760.1 145 KPEVGDDAVWSLIS 158
                 469********977 PP

>> GNAT_like  GCN5-related N-acetyltransferase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.041   1.5e+02      33      54 ..      38      59 ..      36      64 .. 0.87
   2 ?    2.8   0.1     0.043   1.6e+02      33      54 ..      57      78 ..      56      83 .. 0.86
   3 ?    2.8   0.1     0.041   1.5e+02      33      54 ..      76      97 ..      74     102 .. 0.87
   4 ?    2.9   0.1     0.039   1.4e+02      33      55 ..      95     117 ..      94     122 .. 0.86
   5 ?    3.0   0.1     0.035   1.3e+02      33      54 ..     114     135 ..     112     139 .. 0.87
   6 ?    2.9   0.2     0.039   1.4e+02      33      54 ..     133     154 ..     131     158 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.041
   GNAT_like 33 AvWaaagdgrplrvdagDdaAr 54
                AvW+   d r ++ + gDda+ 
  CCE30760.1 38 AVWSLISDKREVKPKVGDDAVW 59
                9***99999999*******986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.043
   GNAT_like 33 AvWaaagdgrplrvdagDdaAr 54
                AvW+   d r ++ + gDda+ 
  CCE30760.1 57 AVWSLISDKREVKPKVGDDAVW 78
                9***99999999*******986 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.041
   GNAT_like 33 AvWaaagdgrplrvdagDdaAr 54
                AvW+   d r ++ + gDda+ 
  CCE30760.1 76 AVWSLISDKREVKPKVGDDAVW 97
                9***99999999*******986 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.039
   GNAT_like  33 AvWaaagdgrplrvdagDdaArk 55 
                 AvW+   d r ++ + gDda+  
  CCE30760.1  95 AVWSLISDKRETKPEVGDDAVWS 117
                 9***888999999******9865 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.035
   GNAT_like  33 AvWaaagdgrplrvdagDdaAr 54 
                 AvW+   d r ++ + gDda+ 
  CCE30760.1 114 AVWSLISDKREAKPEVGDDAVW 135
                 9***999999999******986 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.039
   GNAT_like  33 AvWaaagdgrplrvdagDdaAr 54 
                 AvW+   d r ++ + gDda+ 
  CCE30760.1 133 AVWSLISDKREAKPEVGDDAVW 154
                 9***999999999******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       144  (0.00803168); expected 358.6 (0.02)
Passed bias filter:                      130  (0.00725082); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1316.98
//
Query:       CCE30761.1  [L=211]
Description: uncharacterized protein CPUR_04610 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-31  108.4   4.2    6.1e-31  107.9   4.2    1.1  1  DUF3328   Domain of unknown function (DUF3328)


Domain annotation for each model (and alignments):
>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   4.2   3.4e-35   6.1e-31      75     216 ..       8     145 ..       2     154 .. 0.91

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 3.4e-35
     DUF3328  75 yrgepspevdaaWddllkleailipreelrrlgkdpaaelevedkseggyiaglevfHqLHCLnllrkalypeyygypglsegeeeedrvHleHCidiL 173
                  +g+pspevda+Wddl ++ +   p e++++lg++    + ++  ++g++++  +v H LHCL++l ++ +p+yy +p+ +e+e+ + + H  HC++ L
  CCE30761.1   8 IMGPPSPEVDAKWDDLTQFFFTEFPYEDMKKLGREN---EAIQL-PNGNFMVLYTVNHLLHCLKRLHHSRHPDYY-FPNMTEAEKIKGNKHDMHCLEDL 101
                 689*********************************...55554.4558**************************.*********************** PP

     DUF3328 174 rqsimChaDvtlitfnwvkgtkgpvpdfntehqCrdfealld.W 216
                  q + ChaD++++t +w ++++ p  + +  h+C++++ l+d +
  CCE30761.1 102 VQEVICHADTAPYTTRWYQKDPRPTGNSDILHECVNWDMLKDeF 145
                 ******************988888888999*********99754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 1839.82
//
Query:       CCE30762.1  [L=59]
Description: uncharacterized protein CPUR_04611 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 443.27
//
Query:       CCE30763.1  [L=634]
Description: uncharacterized protein CPUR_04612 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-18   66.1   0.0    1.8e-14   53.7   0.0    2.3  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.7e-17   63.6   0.1    2.1e-13   50.2   0.0    3.0  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    7.8e-12   45.1   0.2    5.4e-06   25.9   0.0    2.5  2  FAD_binding_3   FAD binding domain
    4.3e-11   42.0   0.0    3.5e-09   35.6   0.0    2.3  2  FMO-like        Flavin-binding monooxygenase-like
    2.7e-10   40.3   0.0    8.5e-06   25.9   0.0    2.9  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.6e-08   35.0   0.5     0.0014   19.2   0.1    2.7  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    2.7e-08   33.4   0.1    2.7e-05   23.5   0.0    3.0  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
      1e-07   31.4   0.6    0.00093   18.4   0.3    2.4  2  FAD_binding_2   FAD binding domain
    1.1e-06   27.7   0.4    0.00094   18.0   0.0    3.0  3  HI0933_like     HI0933-like protein
    5.4e-06   26.2   0.3      0.038   13.6   0.4    3.3  3  DAO             FAD dependent oxidoreductase
    3.2e-05   23.3   0.0      0.037   13.3   0.0    2.4  2  Thi4            Thi4 family
    4.4e-05   22.7   0.5      0.042   12.9   0.0    3.2  3  GIDA            Glucose inhibited division protein A
    0.00024   21.3   0.1       0.13   12.6   0.0    2.5  2  TrkA_N          TrkA-N domain
    0.00048   19.5   0.1      0.017   14.5   0.0    2.3  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.001   19.2   0.1        0.8    9.8   0.0    2.3  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
      0.001   18.5   0.1     0.0026   17.2   0.0    1.7  2  FAD_oxidored    FAD dependent oxidoreductase
     0.0022   17.6   0.8      0.034   13.7   0.2    2.2  2  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
      0.003   16.7   0.1       0.35    9.9   0.0    2.4  2  Lycopene_cycl   Lycopene cyclase protein
     0.0042   16.4   0.0        8.9    5.5   0.0    3.4  3  Amino_oxidase   Flavin containing amine oxidoreductase
     0.0067   15.8   0.2      0.014   14.7   0.0    1.5  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.012   15.6   0.0        3.2    7.7   0.0    2.9  3  NAD_binding_9   FAD-NAD(P)-binding
      0.013   15.9   0.0        1.6    9.2   0.0    2.3  2  NAD_binding_7   Putative NAD(P)-binding
      0.015   15.9   0.0       0.13   12.9   0.0    2.4  2  SnoaL_2         SnoaL-like domain
      0.017   14.8   0.0        2.7    7.6   0.0    2.4  2  ApbA            Ketopantoate reductase PanE/ApbA
       0.03   14.2   0.2        1.1    9.1   0.0    2.2  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.045   13.3   0.3        1.8    8.1   0.0    2.2  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
      0.057   12.9   0.1        1.3    8.4   0.0    2.2  2  adh_short       short chain dehydrogenase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   2.6e-17   1.8e-14       2     186 ..     213     428 ..     212     439 .. 0.71
   2 !    9.9   0.0    0.0006       0.4     193     239 ..     517     559 ..     507     571 .. 0.83

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 2.6e-17
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE.TTHCHHHCSHHHHCHHHHHHHHHHHHH........................HHHHCHHHHCCCCHCCT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve.legtclnggcllskallgvaedaeias........................evvkklnqgielllgee 74 
                  +v+++G+G AGl+aa +l++ g+  ++++  e+   n++  +++ +l+ +  ++ +                            + ++ ++ ++++  
   CCE30763.1 213 QVLIVGAGQAGLTAAVRLKALGVSSLIIDrNERVGDNWRNRYHQLVLHDPVWYDHMPylnfppqwpvftpkdkladwfesyV--SIMELNVWMRTELV 308
                  89**************************77455555566666666666666665555666778888899*999999998552..33344444444422 PP

                  CEEEEESCEEEEETEEEC.......TCEEEEEESEEEE---.EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-T..SEEEEES-SHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  75 vvkidpgkkkvklekkke.......gdeekiaydklvlAtG.ssprdl.gipGvaenvgklvrtldsaealklkllp..krivvvGgGyiGvElAaal 161
                    + d+ k++ ++e  ++       ++ + +   +++ AtG +  + l  ipG+   +g+  r+++sae l    ++   ++vvvG+ + G+++A++l
   CCE30763.1 309 QSSWDETKRTWTIELARKgsdsdgaSESRIFHPRHVIQATGhCGVKCLpVIPGMDSFAGH--RICHSAEFLGARDNEkgMKAVVVGSCNSGLDIAQEL 404
                  555565566666544444677777555566666********7566655599***666655..67777777766655555999**************** PP

                  HHHT-EEEEEESSSSSSTTS-HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 162 aklgkevtlveardrllraldkels 186
                  a+ g++vt+v++ ++ +     +++
   CCE30763.1 405 AENGYDVTIVQRSSTTV-VSSYAIT 428
                  ************99876.3344455 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0006
                  HHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 193 lekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrp 239
                  +++ +++vk g+++ ei ++g    + l+dg+e++ad +++a+G++ 
   CCE30763.1 517 ITDGKIKVKQGKEIREILPRG----MRLSDGTELEADQIIFATGYQS 559
                  556689999999999999999....7999999999999999999975 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   3.2e-16   2.1e-13       1     199 [.     215     420 ..     215     435 .. 0.74
   2 !    7.9   0.0    0.0025       1.6     221     275 ..     516     565 ..     508     586 .. 0.80

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 3.2e-16
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkg.nignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelp 97 
                  +I+GaG aGl+aa+ lk +g+ + li++++ ++g+ +++ + +  + +p +  +   +p ln+  ++  p f        +++++++++++++  el+
   CCE30763.1 215 LIVGAGQAGLTAAVRLKALGV-SSLIIDRNeRVGDNWRNRYHQLVLHDPVWYDH---MPYLNFPPQW--PVF------TPKDKLADWFESYVSIMELN 300
                  6********************.579****999******9999888888877655...6666665443..433......34677888888888888888 PP

  Pyr_redox_3  98 iklfeeV.es.vkkedegfeve...........tsketyeAkkviiAtGefdkPnklnipGeek....lvkhyskvk.efhkyagqkvvViGgknSav 177
                  + + +e  +s  ++++++ ++e           ++++ ++ ++vi AtG  +   ++ ipG ++      +h++++  + ++ +g k vV+G  nS+ 
   CCE30763.1 301 VWMRTELvQSsWDETKRTWTIElarkgsdsdgaSESRIFHPRHVIQATGHCGVKCLPVIPGMDSfaghRICHSAEFLgARDNEKGMKAVVVGSCNSGL 398
                  87776651331333566677763222222111134457999********************9975442344666665255566799************ PP

  Pyr_redox_3 178 DaAlelvrkgaeVtvvtrgsei 199
                  D+A el+++g +Vt+v r+s+ 
   CCE30763.1 399 DIAQELAENGYDVTIVQRSSTT 420
                  ******************9854 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0025
  Pyr_redox_3 221 lvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflk 275
                  l++ +kikv + +e++ei  +     ++ +dg+++e+ d++++atGy++  s+ +
   CCE30763.1 516 LITDGKIKVKQGKEIREILPRG----MRLSDGTELEA-DQIIFATGYQSMQSQTR 565
                  5666899999999999999763....46789999886.899*******9877665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   8.2e-09   5.4e-06       3      36 ..     213     246 ..     211     256 .. 0.89
   2 !   16.8   0.1   4.7e-06    0.0032       3      42 ..     387     426 ..     385     430 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 8.2e-09
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrstt 36 
                    +VlIVGaG aGl++a  L+  Gv+++++++ ++ 
     CCE30763.1 213 QVLIVGAGQAGLTAAVRLKALGVSSLIIDRNERV 246
                    8*****************************9875 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4.7e-06
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS- CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpra 42 
                    + ++VG+  +Gl  a++L+e G +v++v + sttvv + a
     CCE30763.1 387 KAVVVGSCNSGLDIAQELAENGYDVTIVQRSSTTVVSSYA 426
                    578*******************************998755 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   5.3e-12   3.5e-09       5     222 ..     215     424 ..     211     465 .. 0.75
   2 ?    3.6   0.0     0.027        18     291     331 ..     517     558 ..     499     565 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 5.3e-12
    FMO-like   5 aviGaGvsGlasikccleegleptcfersddiGGlwrfkenveeGrasiyksvvsnsskemscfsdfplpedypnflhnsklleylklfakefdllkyi 103
                  ++GaG +Gl++       g+     +r + +G  wr + +       ++  v      + + + +  +p ++p f +++kl ++++ +   ++l  ++
  CCE30763.1 215 LIVGAGQAGLTAAVRLKALGVSSLIIDRNERVGDNWRNRYHQL----VLHDPV----WYDHMPYLN--FPPQWPVFTPKDKLADWFESYVSIMELNVWM 303
                 5666666666655555555666666666666666665443321....122222....223444544..5689***********************9998 PP

    FMO-like 104 qfkttvcsvkkrpdfstsGqwevvtekegkkesavfd..avmvctGhhvnphlplesfpGiekfkG.qyfhsrdyk.epevfkgkrvlviGlGnsggdi 198
                 + + + +s + +    t       ++++g  es +f    v+  tGh     lp+   pG++ f G ++ hs ++    +  kg + +v+G  nsg di
  CCE30763.1 304 RTELVQSSWDETKRTWTIELARKGSDSDGASESRIFHprHVIQATGHCGVKCLPV--IPGMDSFAGhRICHSAEFLgARDNEKGMKAVVVGSCNSGLDI 400
                 877776776666555555556667899*********83358889****9999996..8********4478****9725678899*************** PP

    FMO-like 199 avelsrtaeqvllstrsGswvlsr 222
                 a el+++  +v +  rs + v+s 
  CCE30763.1 401 AQELAENGYDVTIVQRSSTTVVSS 424
                 ****************99999875 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.027
    FMO-like 291 ilaGavkvks..svkeltetsaifedgtveedidvvifatGyt 331
                 i  G++kvk+  +++e+      + dgt  e  d +ifatGy 
  CCE30763.1 517 ITDGKIKVKQgkEIREILPRGMRLSDGTELE-ADQIIFATGYQ 558
                 6679999985337999999999999*99876.69********6 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.3e-08   8.5e-06       1      39 [.     216     254 ..     216     278 .. 0.84
   2 !   11.2   0.0   0.00049      0.33       1      31 [.     390     420 ..     390     459 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.3e-08
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EEC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasye 39 
                    IvGaG +Gl+aA +L+  g++ l++++++r+G +++ + 
     CCE30763.1 216 IVGAGQAGLTAAVRLKALGVSSLIIDRNERVGDNWRNRY 254
                    9*******************************8887664 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00049
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31 
                    +vG+  sGl +A++La++g+dv+++++++ +
     CCE30763.1 390 VVGSCNSGLDIAQELAENGYDVTIVQRSSTT 420
                    89***********************998765 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00015       0.1       2      35 ..     214     247 ..     213     258 .. 0.92
   2 !   19.2   0.1     2e-06    0.0014       1      34 [.     387     420 ..     387     434 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00015
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35 
                 v++vG+G  gl +A  l++lg +  +++r++++ 
  CCE30763.1 214 VLIVGAGQAGLTAAVRLKALGVSSLIIDRNERVG 247
                 89****************************9987 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 2e-06
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkl 34 
                 k+vvvG+ ++gl+ A++lae g +Vt+v+rs++ 
  CCE30763.1 387 KAVVVGSCNSGLDIAQELAENGYDVTIVQRSSTT 420
                 68****************************9875 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.054        36     179     205 ..     199     225 ..     188     244 .. 0.81
   2 !   23.5   0.0     4e-08   2.7e-05     142     228 ..     334     420 ..     302     429 .. 0.79
   3 ?    2.6   0.0      0.09        60     325     341 ..     542     558 ..     521     559 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.054
  K_oxygenase 179 seylerkeellakkriaVvGsGqSaae 205
                   ++l r+ e+ ++ ++++vG+Gq +  
   CCE30763.1 199 RRLLARNYEDGTEPQVLIVGAGQAGLT 225
                  56777888899999*********9855 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 4e-08
  K_oxygenase 142 geeeelearnlvlgvG..tepkiPev..leklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrseal 228
                   e++ ++ r+++ ++G  +  ++P +  ++++ g +r++Hs+e+l  + +++++ + +VvGs  S+ +i+++l+++    ++++v rs+  
   CCE30763.1 334 SESRIFHPRHVIQATGhcGVKCLPVIpgMDSFAG-HRICHSAEFLGAR-DNEKGMKAVVVGSCNSGLDIAQELAENGY--DVTIVQRSSTT 420
                  4566788999999999765666665433667775.************9.68999999****************99865..88889888765 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.09
  K_oxygenase 325 eeetlevdavvlATGYr 341
                  + ++le+d +++ATGY+
   CCE30763.1 542 DGTELEADQIIFATGYQ 558
                  557899**********8 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.3   1.4e-06   0.00093       2      34 ..     214     246 ..     213     250 .. 0.92
   2 !   11.2   0.0   0.00022      0.15       2     106 ..     388     492 ..     387     623 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.4e-06
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqef 34 
                    v+++G+G AGL+AA++++  G + ++++  +++
     CCE30763.1 214 VLIVGAGQAGLTAAVRLKALGVSSLIIDRNERV 246
                    9*************************9998875 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00022
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGST.C.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkag.ikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    ++V+Gs  +GL  A e+ae+G +v++v   +    + + s +  d++ ++   ++g   d+ +  ++ + +++ +  + ++ +++ e+ ++ ++ L
     CCE30763.1 388 AVVVGSCNSGLDIAQELAENGYDVTIVQRSST---TVVSSYAITDIAMKGLYSEDGpPVDDADMIMHSMPNSVLKAIQVEVGKVMRENDKDLLEGL 480
                    69**************************9998...7777777777777666544441567777777777777777778888888988989888888 PP

                    HHTT----B..C CS
  FAD_binding_2  97 eelgvpfsr..t 106
                    e+ g++ ++  +
     CCE30763.1 481 EKSGFKTDNgpD 492
                    888887777441 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.4e-06   0.00094       2      37 ..     213     248 ..     212     251 .. 0.95
   2 ?    2.3   0.0     0.083        55       2      32 ..     387     417 ..     386     421 .. 0.91
   3 ?    3.9   0.0     0.028        18     120     173 ..     518     566 ..     513     578 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.4e-06
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgr 37 
                  +v+++G+G AGl aA+++++ g + l++++++++g 
   CCE30763.1 213 QVLIVGAGQAGLTAAVRLKALGVSSLIIDRNERVGD 248
                  799*****************************9985 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.083
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVllleka 32 
                  + +v+G   +Gl  A ++a++g +V+++ + 
   CCE30763.1 387 KAVVVGSCNSGLDIAQELAENGYDVTIVQRS 417
                  689************************9876 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.028
                  HHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-GGGT-- CS
  HI0933_like 120 keagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiPklGst 173
                  ++ ++k++  +e++++     g   +++++++elead++++AtG +S+ +   +
   CCE30763.1 518 TDGKIKVKQGKEIREILP--RG---MRLSDGTELEADQIIFATGYQSMQSQTRD 566
                  556677777777777733..33...445579****************9765555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.4   5.8e-05     0.038       2      33 ..     214     247 ..     213     258 .. 0.88
   2 ?    4.1   0.0     0.044        29       2      48 ..     388     435 ..     387     488 .. 0.79
   3 ?    4.1   0.0     0.043        29     157     207 ..     518     562 ..     510     587 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.8e-05
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdiag 33 
                 v+i+G+G +Gl++A  L + g   +++++++++g
  CCE30763.1 214 VLIVGAGQAGLTAAVRLKALGvsSLIIDRNERVG 247
                 99***************777999******98777 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.044
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS CS
         DAO   2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl 48 
                  v++G+   Gl +A eLa+ g  Vt++ +++     +S + + + + gl
  CCE30763.1 388 AVVVGSCNSGLDIAQELAENGydVTIVQRSSTTV-VSSYAITDIAMKGL 435
                 69999999********************995544.77776666666666 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.043
                 HHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHHHH CS
         DAO 157 ealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsdll 207
                  ++ +++ +g e++++  +  +++++    +g++ +ad+++ a+G +s ++
  CCE30763.1 518 TDGKIKVKQGKEIREI-LP--RGMRLS---DGTELEADQIIFATGYQSMQS 562
                 3444899999999998.43..367772...2666346********998643 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.5e-05     0.037      14      53 ..     208     246 ..     199     262 .. 0.82
   2 !    7.3   0.0    0.0037       2.4      19      50 ..     387     417 ..     380     421 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.5e-05
                 HHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS- CS
        Thi4  14 kyaesDvvivGaGssGLtaayylakkpdlkvailersvsp 53 
                 +  e  v+ivGaG +GLtaa  l    ++  +i++r+  +
  CCE30763.1 208 DGTEPQVLIVGAGQAGLTAAVRLKAL-GVSSLIIDRNERV 246
                 556889***************99877.9999999887555 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0037
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvailers 50 
                   v+vG+  sGL  a+ la++ +  v+i+ rs
  CCE30763.1 387 KAVVVGSCNSGLDIAQELAEN-GYDVTIVQRS 417
                 579******************.9999999886 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   6.4e-05     0.042       1      28 [.     213     240 ..     213     255 .. 0.88
   2 ?    2.0   0.0      0.13        86       2      36 ..     388     422 ..     387     438 .. 0.88
   3 ?    4.2   0.0     0.029        19     110     150 ..     521     557 ..     510     572 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.4e-05
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi 28 
                 +v ++G+G AG+ AA+ ++ lG++ l+i
  CCE30763.1 213 QVLIVGAGQAGLTAAVRLKALGVSSLII 240
                 599********************99887 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.13
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLithkldtia 36 
                  +V+G   +G+  A ++a+ G++v++++ +  t++
  CCE30763.1 388 AVVVGSCNSGLDIAQELAENGYDVTIVQRSSTTVV 422
                 58************************977776664 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.029
                 TEEEEES.-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 110 nleiiee.eveeliveekkvkgvvtedgetikakavviatGt 150
                 ++++ ++ e+ e+++     +g++++dg++++a++++ atG 
  CCE30763.1 521 KIKVKQGkEIREILP-----RGMRLSDGTELEADQIIFATGY 557
                 677777437899999.....9********************6 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00019      0.13       1      49 [.     214     262 ..     214     266 .. 0.89
   2 ?    6.2   0.0     0.018        12       2      34 ..     389     421 ..     388     438 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00019
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-T CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgda 49 
                 ++i+G+G+ G + a +L++ g  + ++id++e++ ++ r++  + v +d+
  CCE30763.1 214 VLIVGAGQAGLTAAVRLKAlGV-SSLIIDRNERVGDNWRNRYHQLVLHDP 262
                 68*****************777.5*********99999999888877775 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.018
                 EEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHH CS
      TrkA_N   2 iiiGlGrvGrslaeeLse.ggkdvvvidkdeerv 34 
                 +++G  + G  +a+eL e g+ dv+++ ++  +v
  CCE30763.1 389 VVVGSCNSGLDIAQELAEnGY-DVTIVQRSSTTV 421
                 899***************666.7****9988765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.6e-05     0.017      28      73 ..     203     248 ..     183     261 .. 0.77
   2 ?    2.5   0.0      0.12        82      35      71 ..     384     420 ..     366     453 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-05
                   CGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C  28 allgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73 
                   a   ++ ++ +v i+G+G+ G ++a rlka+g+  +++dr+++  +
    CCE30763.1 203 ARNYEDGTEPQVLIVGAGQAGLTAAVRLKALGVSSLIIDRNERVGD 248
                   44445667789*****************************988666 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.12
                   TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHH CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavakrlkafgmkviaydrskkk 71 
                   +g++  ++G  + G  +a+ l++ g +v++++rs ++
    CCE30763.1 384 KGMKAVVVGSCNSGLDIAQELAENGYDVTIVQRSSTT 420
                   789999*************************999764 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0012       0.8       5      47 ..     204     245 ..     200     260 .. 0.79
   2 !    7.1   0.0    0.0082       5.4      11      48 ..     384     420 ..     377     439 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
                   HHHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHH CS
  Shikimate_DH   5 kkleslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtle 47 
                   ++ e+ +e +vl++GaG+ +  +a  L a gv + +++ R+ +
    CCE30763.1 204 RNYEDGTEPQVLIVGAGQAGLTAAVRLKALGVSS-LIIDRNER 245
                   5556677889**********************95.56677765 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0082
                   TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHH CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtler 48 
                   k+ k++++G  + +  +a+ L+++g++ v+++ R+ + 
    CCE30763.1 384 KGMKAVVVGSCNSGLDIAQELAENGYD-VTIVQRSSTT 420
                   6789**********************9.******9765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     4e-06    0.0026       2      35 ..     214     247 ..     213     261 .. 0.93
   2 ?   -2.7   0.0       4.2   2.8e+03       3      31 ..     389     417 ..     389     419 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4e-06
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlG 35 
                   v++vG+g aG++AA+  +  G + l++++++++G
    CCE30763.1 214 VLIVGAGQAGLTAAVRLKALGVSSLIIDRNERVG 247
                   9******************************999 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.2
  FAD_oxidored   3 vVvGGgpaGvaAAiaAaraGakvlLveer 31 
                   vVvG+  +G+  A   a++G  v +v+++
    CCE30763.1 389 VVVGSCNSGLDIAQELAENGYDVTIVQRS 417
                   89************************987 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.21   1.4e+02       6      35 ..     213     242 ..     210     254 .. 0.83
   2 !   13.7   0.2   5.2e-05     0.034       4      87 ..     385     471 ..     383     478 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.21
                 -EEEES-SHHHHHHHHHHHHTT--EEEEE- CS
        IlvN   6 kiaviGyGsqGhaqalnlrdsgldvvvglr 35 
                 ++ ++G G  G + a  l+  g+   +  r
  CCE30763.1 213 QVLIVGAGQAGLTAAVRLKALGVSSLIIDR 242
                 799******************997666555 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 5.2e-05
                 TS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-H.HHHHHHHT.T-EEEEHHH..HHHT-SEEEE-S-HHHHHHHHHHHTGGG--T CS
        IlvN   4 gkkiaviGyGsqGhaqalnlrdsgldvvvglregsk.svkkAkee.gfevltvae..avkkadvvmiliPDelqkevyeeeiepnlke 87 
                 g k +v+G  + G   a++l ++g dv++ +r++++   + A  + +++ l  ++   v++ad++m  +P+++ k++   e+ + ++e
  CCE30763.1 385 GMKAVVVGSCNSGLDIAQELAENGYDVTIVQRSSTTvVSSYAITDiAMKGLYSEDgpPVDDADMIMHSMPNSVLKAIQ-VEVGKVMRE 471
                 67889**************************99996323334433155555555433599************999886.666666665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00053      0.35       2      36 ..     214     246 ..     213     262 .. 0.87
   2 ?    4.2   0.0     0.028        18       3      34 ..     389     418 ..     388     426 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00053
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    v+++GaG Agl  A rl  ++ g++ ++i+  + +
     CCE30763.1 214 VLIVGAGQAGLTAAVRL--KALGVSSLIIDRNERV 246
                    89***************..999*999999987766 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.028
  Lycopene_cycl   3 vviGaGpAglslAarlteakpglkvvlieasp 34 
                    vv+G+   gl +A++l  a+ g  v++++ s 
     CCE30763.1 389 VVVGSCNSGLDIAQEL--AENGYDVTIVQRSS 418
                    89**************..88888888887665 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.013       8.9       2      27 ..     222     247 ..     221     250 .. 0.98
   2 ?    3.8   0.0     0.044        29       2      20 ..     396     414 ..     395     419 .. 0.92
   3 ?    2.9   0.0     0.079        52     241     267 ..     536     565 ..     498     583 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.013
                    HHHHHHHHHHHTTEEEEEEESSSSSB CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvG 27 
                    aGL+aA +L++ G++ +++  ++rvG
     CCE30763.1 222 AGLTAAVRLKALGVSSLIIDRNERVG 247
                    8************************9 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.044
                    HHHHHHHHHHHTTEEEEEE CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvl 20 
                    +GL  A++L+++G+dVt++
     CCE30763.1 396 SGLDIAQELAENGYDVTIV 414
                    8*****************8 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.079
                    EEEEETTSTEEEESEEEE-S-HHHHH...S CS
  Amino_oxidase 241 vtvtledgevveaDaVvvTvplgvlk...a 267
                     + +l+dg+++eaD+++ ++    ++   +
     CCE30763.1 536 RGMRLSDGTELEADQIIFATGYQSMQsqtR 565
                    567899**************9999993322 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.1e-05     0.014      29      66 ..     212     249 ..     199     261 .. 0.86
   2 ?   -3.8   0.1       9.8   6.5e+03      30      61 ..     387     418 ..     383     423 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.1e-05
                  -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHH CS
  AlaDh_PNT_C  29 akvlviGgGvaGlqAiatakglgakVtvlDvrparleq 66 
                   +vl++G+G aGl A+   k+lg +  ++D ++++  +
   CCE30763.1 212 PQVLIVGAGQAGLTAAVRLKALGVSSLIIDRNERVGDN 249
                  58*****************************9987665 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 9.8
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrp 61 
                  k +v+G    Gl  ++  ++ g +Vt++  ++
   CCE30763.1 387 KAVVVGSCNSGLDIAQELAENGYDVTIVQRSS 418
                  77899999999999999888899998887665 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0048       3.2       2      46 ..     216     254 ..     215     303 .. 0.79
   2 ?   -2.4   0.0       6.2   4.1e+03       1      32 [.     389     415 ..     389     426 .. 0.73
   3 ?    4.6   0.0     0.043        29     136     155 ..     538     557 ..     517     558 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0048
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdq 46 
                    ivGaG +Gl+++ rL a       ++  ++d++e   g  wr + 
     CCE30763.1 216 IVGAGQAGLTAAVRLKALG-----VSSLIIDRNERV-GDNWRNRY 254
                    9**************9994.....777788888887.77787764 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.2
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfd 32 
                    ++vG   +Gl ++++L+++       ++t++ 
     CCE30763.1 389 VVVGSCNSGLDIAQELAENG-----YDVTIVQ 415
                    58899999999999999984.....5555555 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.043
  NAD_binding_9 136 vlladgaslaadaVvLAlGh 155
                    ++l+dg++l+ad+++ A+G 
     CCE30763.1 538 MRLSDGTELEADQIIFATGY 557
                    6799***************7 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.09        60       8      37 ..     212     241 ..     208     293 .. 0.86
   2 ?    9.2   0.0    0.0024       1.6       6      74 ..     384     458 ..     382     469 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.09
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvva 37 
                     +vl+vG+G+ +++ + +l + g    +++
     CCE30763.1 212 PQVLIVGAGQAGLTAAVRLKALGVSSLIID 241
                    589**********99999988777666665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0024
  NAD_binding_7   6 kgkkvlvvGgGevAarkvrklleagakvtvvapevkeele..elvklaeeel.ekd...legadlviaatddrel 74 
                    kg k +vvG  + ++  ++ l+e+g +vt+v   ++  ++   + ++a + l ++d   +++ad+++  +++  l
     CCE30763.1 384 KGMKAVVVGSCNSGLDIAQELAENGYDVTIVQRSSTTVVSsyAITDIAMKGLySEDgppVDDADMIMHSMPNSVL 458
                    57899**************************99964444433444444444435557888999999888777655 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0    0.0002      0.13       1      65 [.      45     115 ..      45     150 .. 0.76
   2 ?   -0.2   0.0       2.4   1.6e+03       3      39 ..     134     173 ..     132     183 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0002
                 HHHHHHHHHTTCHHHHHHTEEEEEEEEET.TSE......EESHHHHHHHHHHHHHHEEEEEEEEEEEEEETT CS
     SnoaL_2   1 vraflaalnagdldalaalfapdvvwedp.gge......lrGreairaffralfaafpdlrfeihdvvadgd 65 
                 v+++   l++  ++  a+lfa d +w+d+ +        ++G+++i+ f++   +++++lr +  ++ ++  
  CCE30763.1  45 VERLNSSLSDSTFKSTASLFAKDGHWRDHlM-LswnfrtVQGPAQIANFLQVCAESKDGLRLQRVAIDESPS 115
                 678888889999999************8842.3366666*************99988887776666655544 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2.4
                 HHHH.HHHTTCHHHHHHTEEEEEEEEET..TSEEESHHHH CS
     SnoaL_2   3 afla.alnagdldalaalfapdvvwedp..ggelrGreai 39 
                 afl+    +g+ d+l +l ++d +w       +lrG +++
  CCE30763.1 134 AFLRiETVRGKGDGLIRLAHEDGEWKIFtiYTSLRGLKGY 173
                 6666333488999************854355557776665 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.004       2.7       1      38 [.     214     252 ..     214     274 .. 0.84
   2 ?    4.7   0.0     0.032        21       2      31 ..     389     418 ..     388     428 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.004
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHH.HHH CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsrrlea.lkk 38 
                 ++i+GaG  G + a++L++ g    +i+r++r+ + +++
  CCE30763.1 214 VLIVGAGQAGLTAAVRLKALGVSSLIIDRNERVGDnWRN 252
                 68***************99**********9966544665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.032
                 EEES-SHHHHHHHHHHHHHTHCEEEE-SCH CS
        ApbA   2 ailGaGaiGsllaakLakagadvtlilrsr 31 
                 +++G+   G  +a +La++g+dvt++ rs 
  CCE30763.1 389 VVVGSCNSGLDIAQELAENGYDVTIVQRSS 418
                 58999999999****************987 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.12        81       2      41 ..     214     253 ..     213     260 .. 0.86
   2 ?    9.1   0.0    0.0017       1.1       2      38 ..     388     424 ..     387     453 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.12
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalek 41 
                 v ++GaG+ G   a  + + g++  ++d++e+  ++ +++
  CCE30763.1 214 VLIVGAGQAGLTAAVRLKALGVSSLIIDRNERVGDNWRNR 253
                 889**************999*********99877766665 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0017
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealeka 38 
                   v+G+   G  ia+ +a++g++V++v++s+ ++ ++
  CCE30763.1 388 AVVVGSCNSGLDIAQELAENGYDVTIVQRSSTTVVSS 424
                 57999*9*********************998877655 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0027       1.8       3      41 ..     214     252 ..     212     261 .. 0.88
   2 ?    3.2   0.2     0.089        59       1      36 [.     386     421 ..     386     431 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0027
                     EEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCT CS
  UDPG_MGDP_dh_N   3 isviGlGYvGlvtaavlaeighevigvDideekvdklns 41 
                     + ++G+G  Gl+ a+ l ++g+  +++D +e+  d++++
      CCE30763.1 214 VLIVGAGQAGLTAAVRLKALGVSSLIIDRNERVGDNWRN 252
                     789***************************987777776 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.089
                     SEEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHH CS
  UDPG_MGDP_dh_N   1 mkisviGlGYvGlvtaavlaeighevigvDideekv 36 
                     mk +v+G+   Gl  a  lae g +v++v  ++++v
      CCE30763.1 386 MKAVVVGSCNSGLDIAQELAENGYDVTIVQRSSTTV 421
                     78899************************9998877 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.17   1.2e+02       3      40 ..     214     250 ..     212     263 .. 0.85
   2 ?    8.4   0.0     0.002       1.3       3      37 ..     388     421 ..     386     429 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.17
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleev 40 
                 vl++Ga++  G+  a +l + G++ +++dr+e+   ++
  CCE30763.1 214 VLIVGAGQA-GLTAAVRLKALGVSSLIIDRNERVGDNW 250
                 899999985.9********************9876655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.002
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekl 37 
                 ++v+G ++  G++ia+ela++G++v++v+rs+ ++
  CCE30763.1 388 AVVVGSCN-SGLDIAQELAENGYDVTIVQRSSTTV 421
                 56666664.499******************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 4379.78
//
Query:       CCE30764.1  [L=203]
Description: related to 1-acyldihydroxyacetone-phosphate reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-37  126.5   2.7      1e-36  126.2   2.7    1.0  1  adh_short       short chain dehydrogenase
    7.1e-27   94.5   0.7    8.2e-27   94.3   0.7    1.0  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    5.9e-06   26.3   0.5    8.3e-06   25.8   0.5    1.3  1  KR              KR domain
    0.00013   22.0   0.1    0.00016   21.6   0.1    1.2  1  NAD_binding_10  NAD(P)H-binding
     0.0055   16.3   1.1     0.0088   15.6   1.1    1.3  1  AIRC            AIR carboxylase
  ------ inclusion threshold ------
      0.012   15.1   0.2      0.023   14.2   0.2    1.5  1  Epimerase       NAD dependent epimerase/dehydratase family
      0.013   15.7   0.2      0.025   14.8   0.2    1.5  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
      0.016   14.7   0.1      0.026   14.1   0.1    1.3  1  NmrA            NmrA-like family
      0.018   14.7   0.0      0.027   14.1   0.0    1.2  1  ApbA            Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   2.7   5.2e-40     1e-36       1     190 [.      14     199 ..      14     202 .. 0.93

  Alignments for each domain:
  == domain 1  score: 126.2 bits;  conditional E-value: 5.2e-40
                 SEEEEESTT.SHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---SS--SSGGGCS CS
   adh_short   1 kvvlvtGas.sGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGitgsgpfsels 97 
                 k++lvtG + +GIG  +a el ++G+ v+++ r+ +++ ++++        ++a+++Dv++ e+v a+v+++ + + g+ldvLvnNAG +  +p+ +l+
  CCE30764.1  14 KTALVTGSGiGGIGGSLATELNNAGYFVFCAVRRTSAIDNLLQP------GMVAVELDVQSTESVMAAVKTVSEMTnGRLDVLVNNAGFATHRPALDLD 106
                 79*****65389*****************977776656444433......489*******************99999********************** PP

                 HHH.HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short  98 eee.wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                  +  + ++++vN+ gv+ +++a+ + ++ + +G Ivn++Sva  vp+   +aY A+Kaa++++ +sl++el+p g+ v ++ +G+v++++ k+ 
  CCE30764.1 107 VDGvVASMFDVNVLGVMRMVKAFSDLLI-SAKGCIVNIGSVAPIVPLVYSSAYNATKAALHAYGDSLHMELKPLGVDVLTIITGGVKSNIGKKM 199
                 **99**********************99.99*********************************************************998775 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.7   4.1e-30   8.2e-27       4     183 ..      24     200 ..      20     203 .] 0.93

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 4.1e-30
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-GGGH-HHHH.HHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpfletsreef.dra 98 
                    gIG  +A +l+++G+ v ++ ++ +a   +++l +  g  ++e+DV+++e+v a+v++v e + g+lD+lvnnag+a++   p+l+++ +++ + +
    CCE30764.1  24 GGIGGSLATELNNAGYFVFCAVRRTSA---IDNLLQP-GMVAVELDVQSTESVMAAVKTVSEMTnGRLDVLVNNAGFATH--RPALDLDVDGVvASM 114
                   59***************9999998888...9999984.6778********************999***************..******998853889 PP

                   HHHHTHHHHHHHHHHHH.HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGST CS
  adh_short_C2  99 ldvnlyslfllakaalp.lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgik 183
                   +dvn+ ++++++ka+   l+ ++g ivn+ sv+  + +   +ay+a+Kaal+a   +l +el p g+ v ++  g +k ++ ++++
    CCE30764.1 115 FDVNVLGVMRMVKAFSDlLISAKGCIVNIGSVAPIVPLVYSSAYNATKAALHAYGDSLHMELKPLGVDVLTIITGGVKSNIGKKMQ 200
                   9****************888888*********9999999999************************************99988775 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.5   4.2e-09   8.3e-06       2     161 ..      15     170 ..      14     192 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 4.2e-09
                 EEEEET.TTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE---------TT CS
          KR   2 tylitG.GlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvlrdklle 98 
                 t l+tG G+Gg+G +la+ l + g      + R+        + i++l + g+   +v++Dv + ++v a+++++++ + +++   ++ Ag++  ++  
  CCE30764.1  15 TALVTGsGIGGIGGSLATELNNAGYFVFCAVRRT--------SAIDNLLQPGM--VAVELDVQSTESVMAAVKTVSEMTnGRLDVLVNNAGFATHRPAL 103
                 56999989************99997766666666........57999999875..6899****************99888******************* PP

                 T--HHHH.HHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHH CS
          KR  99 emtaedl.eqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaaNaflDalae 161
                 +++ + + ++++   v G+  + ++++d   +    +v + S+a ++     ++Y a+ a l+a+ +
  CCE30764.1 104 DLDVDGVvASMFDVNVLGVMRMVKAFSDlliSAKGCIVNIGSVAPIVPLVYSSAYNATKAALHAYGD 170
                 ***997527899****************987788899********************9999988755 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   8.2e-08   0.00016       4      61 ..      24      79 ..      22     126 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 8.2e-08
                    SHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT- CS
  NAD_binding_10  4 GkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkga 61
                    G++G  l++el ++g + v   vR+++ +++l  ++g+ +ve+dv+++e++ +a+k +
      CCE30764.1 24 GGIGGSLATELNNAG-YFVFCAVRRTSAIDNLL-QPGMVAVELDVQSTESVMAAVKTV 79
                    99************5.999************98.7*******************9965 PP

>> AIRC  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.1   4.4e-06    0.0088      20     126 ..      53     167 ..      45     177 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.4e-06
                 HHHHHTT-EEEEEE--TTTSHHHHHHHHHHCHTTTEEEEEEEEESS--HH.......HHHHHHSSS-EEEEEE--STTC..CHHHHHHHHT--TTS--E CS
        AIRC  20 eilkelgveyevrvvSahrtpeelleyaeeaeerglkviIagAGgaahLp.......gvvaslttlPVigvPvkskalk..gldsllSivqmPsgvpva 109
                 ++l+   v++e++v S     + ++++ e +++  l+v++  AG a h p       gvvas+ ++ V+gv    ka++   +++   iv++ s +p++
  CCE30764.1  53 NLLQPGMVAVELDVQSTESVMAAVKTVSE-MTNGRLDVLVNNAGFATHRPaldldvdGVVASMFDVNVLGVMRMVKAFSdlLISAKGCIVNIGSVAPIV 150
                 55666678889999998877776666555.55666************96655555559*************8887654311234445689999999999 PP

                 E-SSTHHHHHHHHHHHH CS
        AIRC 110 tvaigkaknAallAaqi 126
                  +   +a+nA  +A++ 
  CCE30764.1 151 PLVYSSAYNATKAALHA 167
                 98888888887777654 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   1.2e-05     0.023       2     108 ..      17     129 ..      16     178 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
                 EEET.TTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHH....H..T-SEEEE--S.---HHHHHHSHHHHHHHHT CS
   Epimerase   2 lVtG.atGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfke....e..qpdavihlAa.vggvaassedpadfieknl 92 
                 lVtG + G iG  l+ +l+++gy v +  r++sa  + +++    veld+   +++ +++k+    +  + d+ ++ A+   + +a  +   d +    
  CCE30764.1  17 LVTGsGIGGIGGSLATELNNAGYFVFCAVRRTSAIDNLLQPGMVAVELDVQSTESVMAAVKTvsemTngRLDVLVNNAGfATHRPA-LDLDVDGV-VAS 113
                 889844599****************************99999999*****999977777664111112356777777774444443.33333322.233 PP

                 HHHHHHHHHHHHHTCT CS
   Epimerase  93 qgtlnlleaarkagvk 108
                 +  +n+l ++r  ++ 
  CCE30764.1 114 MFDVNVLGVMRMVKAF 129
                 4444555555444444 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.2   1.3e-05     0.025       6      58 ..      22      78 ..      18      95 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
                   --SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.......EEE-SSHHHHHHHCSE CS
  NAD_binding_2  6 GlGvMGsnmalnllkagykvavynrtkekveelvaeg.......akaaesieelvasldv 58
                   G+G +G ++a++l +agy v +  r+++++++l++ g       ++   s e+++a++++
     CCE30764.1 22 GIGGIGGSLATELNNAGYFVFCAVRRTSAIDNLLQPGmvaveldVQ---STESVMAAVKT 78
                   99**********************************9444332222...22223333333 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.3e-05     0.026       6      66 ..      22      80 ..      16      84 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
                TTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-S CS
        NmrA  6 aTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvd 66
                + G +G+s++  l +ag+ v+  vR t   ++++l + G + v+ d+++ es+ +a+k+v 
  CCE30764.1 22 GIGGIGGSLATELNNAGYFVFCAVRRT--SAIDNLLQPGMVAVELDVQSTESVMAAVKTVS 80
                4599*********************76..689**************************996 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.3e-05     0.027       5      48 ..      22      69 ..      18      92 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
                S-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT...C CS
        ApbA  5 GaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseg...g 48
                G+G+iG+ la +L +ag+ v + +r+   +++l + G+   + +   +
  CCE30764.1 22 GIGGIGGSLATELNNAGYFVFCAVRRTsAIDNLLQPGMVAVELDvqsT 69
                99*************************9*******9998887774422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1528.57
//
Query:       CCE30765.1  [L=424]
Description: related to flavin oxidoreductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-46  159.4   0.0    3.6e-45  154.7   0.0    2.0  2  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.1    0.0033        59       1      18 [.      70      87 ..      70      93 .. 0.91
   2 !  154.7   0.0     2e-49   3.6e-45      55     332 ..      93     389 ..      88     397 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.0033
                  CCCS-EEETTEEESSSEE CS
  Oxidored_FMN  1 kLFkPikignmtLknRiv 18
                  kLF+P+ki   +L nRi 
    CCE30765.1 70 KLFTPLKIRGIQLPNRIW 87
                  79**************95 PP

  == domain 2  score: 154.7 bits;  conditional E-value: 2e-49
                   EEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEEEEEE--GGGS..SCSTCEC.................SS.ESSSSSTTT-..... CS
  Oxidored_FMN  55 teaafvnpksggfdnapgiwdeeqieewrklteavhengskvvvqlwhlGreakseyladqe...............vdspsdpvaldaqee....e 132
                    ea++v++++++++++ giw + ++  ++k +e  h +++++++ql+h+Gr+a +   +                  v                  e
    CCE30765.1  93 LEATAVQANGRITPEDSGIWLDAHVDTLKKHVEFAHSQNALIGIQLAHAGRKAST-VAPWLSsgatateevggwpneV-------------VgpsdE 175
                   599*************************************************953.3333332333334332222222.............244443 PP

                   S...CS..-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT----STTSSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEE CS
  Oxidored_FMN 133 saeevy..kkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnkrtDeygGslenRarFllevvdaVkeavgeer.vgyRlS 226
                      e y  ++++++ +i+ql ++f  A +r+i AgfD++e h a+GYL+  F+sp  nkrtDeygGs enR r +le+vd+ +e++ +++ +++R+S
    CCE30765.1 176 PFDEHYpsPRSMSAADIAQLRKDFISAIRRSILAGFDIIELHFAHGYLVSSFFSPAVNKRTDEYGGSFENRTRLALELVDDAREVMPKDMpLFVRIS 272
                   3334444489*************************************************************************************** PP

                   CE--STTS--HHHH........HHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCCTTHHHHHHCCCHSSE..EEE-SS--SHHHHHHHHHT CS
  Oxidored_FMN 227 pedvvekgldfaet........aqkivllkelekrlkdgkklalvhaaeprkrgagsvrteqekntefvkevwkkp..litvgriadeekaaeivae 313
                   + d  +++ +               ++l ++ +++++d++ +  +ha +++  g+g +       ++++k  +  +  + +vg+i   ++a+ + + 
    CCE30765.1 273 ATDWLDTNPEWQGKpnwtvddsVRLAKLFAQRGVDVLDVSTGG-IHALQKVSSGPGYQAPF----AKKIKAAVGSAmlISAVGSIMTGDVAQAVIEG 364
                   *997665544333333343445777777788888888777665.67777677777665555....6777766665511569********76666554 PP

                   ......TS-SEEEESTHHHH-TTHH CS
  Oxidored_FMN 314 ......geadLvamgRefladpdlv 332
                          + dL+a gR f  +p lv
    CCE30765.1 365 gkdgddTPLDLIAAGRMFQKNPGLV 389
                   4443333568************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3212.02
//
Query:       CCE30766.1  [L=297]
Description: uncharacterized protein CPUR_04615 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-75  253.3   0.9    3.2e-75  253.1   0.9    1.0  1  GH131_N   Glycoside hydrolase 131 catalytic N-terminal domain
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.026   14.2   0.0    1.3  1  DUF3507   Domain of unknown function (DUF3507)
      0.052   13.4   0.0      0.082   12.7   0.0    1.3  1  VirB8     VirB8 protein


Domain annotation for each model (and alignments):
>> GH131_N  Glycoside hydrolase 131 catalytic N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.1   0.9   5.3e-79   3.2e-75       1     255 [.      32     290 ..      32     292 .. 0.95

  Alignments for each domain:
  == domain 1  score: 253.1 bits;  conditional E-value: 5.3e-79
     GH131_N   1 vlfDGRvpanataadfdklstsqvkpyltvvkgsesaseyltlskeak..spadk.sktkvlkvkiddkSiFvp.genaqtgfrRaellpqkdelndai 95 
                 ++fDGRvpan+t ++fd+++ ++++p   vv  ++++s++l++ ++    s +d  + tk+++v+i+d+SiF+p  +n q+gfrR+el+ ++++++d  
  CCE30766.1  32 LVFDGRVPANFTLEQFDVKN-NVFNP-SFVVGANQTFSSVLRFVNHGTshSLFDRvGVTKPVEVTINDRSIFAPsVSNVQVGFRRTELMIASNSGKDIS 128
                 59*****************7.*****.8899999*********9995423788988******************99*********************** PP

     GH131_N  96 eeGvttfhfSvkkdearplnltheyqivflEsa.ysshvfdlkvgtpfgsdtaradtlkv...ldaalktlfstpfekgtwhNFavevdfdastlqvyy 190
                 ++G++t+hfS+ kd+arplnl+heyq+ flE +  s+++f lk+g++ g +t + d+l +   +++  ++lf tpf+ gt+hNFa+ +df  +t +v y
  CCE30766.1 129 TTGIRTLHFSIAKDPARPLNLEHEYQLSFLEDSsSSTNQFVLKTGNITGVNTLDPDSLTLfgnTNKFGDVLFTTPFTAGTFHNFALRLDFTRNTTEVRY 227
                 *******************************999**************************997888899****************************** PP

     GH131_N 191 StgeapLkkvtepiandtsggggefhfgllklplanqsdvvhdGiqesgiqegliysGvfvEdst 255
                 Stg ++Lk vt+p and sg+g ++hfgllk+ l+ + d  ++G+qe+gi+eg+iy+G+f+Eds+
  CCE30766.1 228 STGLHALKSVTGPRANDISGQG-QYHFGLLKKGLNGNGDS-KKGTQETGINEGIIYGGIFMEDSS 290
                 *******************998.**********9998886.89********************96 PP

>> DUF3507  Domain of unknown function (DUF3507)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.4e-06     0.026      63     100 ..      77     114 ..      63     119 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.4e-06
     DUF3507  63 lsalvldklGvsllesvdlsskSrfypaveNLspkyqk 100
                 +s  ++d++Gv+   +v ++++S f p+v N +  ++ 
  CCE30766.1  77 TSHSLFDRVGVTKPVEVTINDRSIFAPSVSNVQVGFRR 114
                 566789*************************9988775 PP

>> VirB8  VirB8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.4e-05     0.082     122     186 ..      73     138 ..      61     150 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
                 HSTT-TTSHHHHTTTSEEE..EEEEEEEEEEETTEEEEEEEEEEE.ETTS--EEEEEEEEEEEE.. CS
       VirB8 122 arsnnensPfaqlgketel.veveiksvvlaspntaqvrfkettrredgtlaktkrwtatltfrye 186
                  ++ ++ s f+++g ++++ v+++ +s++ +s + +qv f++t+ + + ++ k    t++ t++++
  CCE30766.1  73 VNHGTSHSLFDRVGVTKPVeVTINDRSIFAPSVSNVQVGFRRTELMIASNSGKDISTTGIRTLHFS 138
                 3666778************9999999******************8888877544444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2365.83
//
Query:       CCE30767.1  [L=489]
Description: related to glu/asp-tRNA amidotransferase subunit A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-84  283.3   0.0    6.1e-84  282.6   0.0    1.4  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.6   0.0   3.4e-88   6.1e-84       3     451 .]      36     471 ..      34     471 .. 0.90

  Alignments for each domain:
  == domain 1  score: 282.6 bits;  conditional E-value: 3.4e-88
                 HHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE-- CS
     Amidase   3 veaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkTnm 101
                 ++ +l+r++   + lna++ ++++eal++A+k+d+++a+g+e +pL+G+ i+ KDni+ +g+ptt G+ al n++++k a   +rL +aGa+++g++nm
  CCE30767.1  36 ISNVLDRAQL-AKPLNAFIRLLPDEALSAADKIDHAIAHGHELPPLAGLAIVTKDNINQAGIPTTGGTAALLNNRPSKTAPSLRRLMQAGAIVIGRANM 133
                 6788999998.666799********************************************************************************** PP

                 SGGG-SSSSTT..-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-.......-SSTTT-EEE CS
     Amidase 102 defamgssten..svfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv.......alessldvvG 191
                 +e+a+g+++ n  ++ ++++NP+d + +pGGSSGG AAa+A+++v  ++GtDtGGS RiPA+++g++G++P++g  S ++ +       ++++++d++G
  CCE30767.1 134 HELAFGITSTNlqPFANAVHNPYDMNMIPGGSSGGTAAAIASRVVTCGLGTDTGGSARIPAALTGIAGFRPSVGDGSDERRYhdthavvPISHTRDTIG 232
                 *****99887644778**************************************************************99999999999********** PP

                 EEESSHHHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHH.HHH CS
     Amidase 192 plarsvedlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleeals.lyy 289
                 pl+r+v d+ ll + i+++ + ++t                 +l+glr G++  +    ld++++++++++ ++L+eaG+ +v+ ++p+l e+ s + +
  CCE30767.1 233 PLGRTVADITLLDSIISRRPRVQPT-----------------ELSGLRLGIPPVLW-SGLDENLEKVLLSVNDRLREAGVVLVKDDIPNLLELDStIGN 313
                 ***********99999976655444.................456******98876.7*************************************999* PP

                 HHHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC..BSEEEEESSSSS- CS
     Amidase 290 lilvaeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafee..lDvllsPtaptpa 386
                  i++ e  + +  yl++          ++  l+k+ +   ++ vk  + l       +   +y + +q +r +l++ fa +f e  +D++l+Pt+  pa
  CCE30767.1 314 PIALHEPIADMPAYLKK-------SHAKNVDLKKIVDGIASPDVKKLFGLVLSDALGM---EYKEVMQVRRPALQKLFATYFAEkrIDAILFPTTILPA 402
                 ****9999887766555.......3344556777777888888888887765444444...34555555555*************************** PP

                 -BCCCCCHHH....CSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHHH CS
     Amidase 387 prlgekdkti....dsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetlL 451
                 +++++ +  +    +    + ++  +t+++ p + ag p ls+pag +  glP+G+++ g+ +++ +lL
  CCE30767.1 403 VPIDYINGSGnvtiNGGPPMDAFATYTRNSGPGSNAGIPGLSIPAGLTTAGLPIGIEINGPLGSDDRLL 471
                 *****99877888899999*****************************99****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3715.97
//
Query:       CCE30768.1  [L=19]
Description: uncharacterized protein CPUR_04617 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (19 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        80  (0.00446204); expected 358.6 (0.02)
Passed bias filter:                       69  (0.00384851); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.25s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 143.12
//
Query:       CCE30769.1  [L=120]
Description: uncharacterized protein CPUR_04618 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 976.56
//
Query:       CCE30770.1  [L=364]
Description: related to gibberellin 20-oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-13   50.5   0.0    4.3e-13   50.0   0.0    1.2  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    2.7e-11   43.8   0.0    7.3e-11   42.5   0.0    1.7  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   4.8e-17   4.3e-13       1     117 [.      21     143 ..      21     144 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 4.8e-17
      DIOX_N   1 iPvidlspl.sdd.edraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFF.alPeeeKekl...akspsfrGysrlgeektdgkkldwkesf 93 
                 +P id++pl +d+   +++va+++++A r++Gffy vnhgv+    ++l + +r F+ al  ++K +l   a +p +r   r g     ++++ ++  +
  CCE30770.1  21 VPRIDIAPLfGDSpVLKKQVAQAIDAASRDTGFFYAVNHGVDL---AKLADETRHFYrALTAADKWRLatgAYNPLHRHKVRGGYSLAVPGHKAVESLC 116
                 799******85553779************************76...79999******99*********666556666666665555555579999**** PP

      DIOX_N  94 dlgtelpeddp...agkplegpnqwPe 117
                 +l++e++ d+p   + +pl++ n wP+
  CCE30770.1 117 YLNPEFQRDHPriaDATPLHEVNDWPA 143
                 ************998899********7 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   8.1e-15   7.3e-11       4      97 ..     196     299 ..     193     302 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 8.1e-15
                   EEEEEE.....E-S-....-----....---EEEEEESSSEEEEEEE-.TT---EEEE.TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE-- CS
  2OG-FeII_Oxy   4 llvlny.....ypph....pdpev....ilglgahtdaslltillqdd.vgglevfkd.gkwlrvppvdnslivniGdallflsngryksvlHrVlp 85 
                   +++++y     yp          +    +l + +h+d sl+t+l q     +l+v+   g+wl+++p+d++++v +G+ +  +++ +y+ + HrV+ 
    CCE30770.1 196 VVLIRYpfldpYPAPaiktA---DddgiKLSVDPHRDVSLITVLCQPGrHQNLQVQGPrGQWLDIEPDDSAYLVCCGSYMAHITGEYYPAPVHRVKW 289
                   56777777444332244432...2345788999**************99******744488***********************************7 PP

                   --GTGSEEEEEE CS
  2OG-FeII_Oxy  86 vnegerRvsiay 97 
                    ne e R+s+ +
    CCE30770.1 290 LNE-E-RLSLPF 299
                   777.4.999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2958.81
//
Query:       CCE30771.1  [L=3614]
Description: uncharacterized protein CPUR_04620 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.5e-102  338.8  12.5    2.2e-08   34.4   0.0   11.8 11  CBM_4_9     Carbohydrate binding domain
    4.3e-51  172.8  25.6    0.00048   20.0   0.0   15.7 21  DUF642      Protein of unknown function (DUF642)
    2.9e-05   24.2   0.2    3.4e+02    1.6   0.0    8.4  9  DUF3127     Domain of unknown function (DUF3127)
  ------ inclusion threshold ------
      0.066   13.3  28.4      1e+02    2.9   0.1    9.8 10  DUF531      Protein of unknown function (DUF531)


Domain annotation for each model (and alignments):
>> CBM_4_9  Carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   8.5e-09   3.8e-05       2     129 ..     619     739 ..     618     746 .. 0.76
   2 !    6.3   0.3    0.0024        11      26     130 ..    1015    1115 ..    1004    1121 .. 0.70
   3 !   34.3   0.0   5.6e-12   2.5e-08       1     119 [.    1404    1514 ..    1404    1522 .. 0.75
   4 !   32.3   0.0   2.3e-11     1e-07       1     119 [.    1629    1739 ..    1629    1747 .. 0.75
   5 !   34.4   0.0     5e-12   2.2e-08       1     119 [.    1869    1979 ..    1869    1987 .. 0.75
   6 !   34.3   0.0   5.6e-12   2.5e-08       1     119 [.    2096    2206 ..    2096    2214 .. 0.75
   7 !   33.7   0.0   8.7e-12   3.9e-08       1     119 [.    2353    2463 ..    2353    2471 .. 0.75
   8 !   33.7   0.0   8.4e-12   3.8e-08       1     119 [.    2605    2715 ..    2605    2723 .. 0.75
   9 !   34.4   0.0     5e-12   2.2e-08       1     119 [.    2907    3017 ..    2907    3025 .. 0.75
  10 !   33.6   0.0   9.3e-12   4.2e-08       1     119 [.    3248    3358 ..    3248    3365 .. 0.74
  11 !   32.1   0.0   2.7e-11   1.2e-07       2     119 ..    3470    3579 ..    3469    3585 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 8.5e-09
                 BCCCECTSTTSTTTTSEECSSTCEEEEECGCSSSSEEEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTS.EEEEEEEEEESSTTSCTCEEEE CS
     CBM_4_9   2 nllkngtFedgglegWkargkssgkasvdvsyngtyslkvsgrgetwdgqaiditirlekgktYtvsfwvkassgk.srtikvkigdtdadganydeva 99 
                 nl+kng+Fe g + +W   g+     s+ +++n++y l       t d   i++ti   +g+ Y++sf++   sg  +  ++ ++   +a         
  CCE30771.1 619 NLIKNGDFELGVVAPWISAGNY----SLVEGHNSVYGLSLRTLPPTSDASSISQTIDTVPGTLYRLSFYMNPISGGsNSMLTCTASAVNA----VGVS- 708
                 99*******************8....555556******7777777*************************98888433333333333333....2222. PP

                 EE...EEEESTSEEEEEEEEE-SSCSCCEEEEE CS
     CBM_4_9 100 de...kvelkgewktlegtFtipkstdenvely 129
                      +++ ++ w   ++tFt p +t   ve+ 
  CCE30771.1 709 -IkipTNVDTNRWSLRSFTFTAP-GTSIVVEFK 739
                 .224577788*************.776666655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0024
                  EEEECGC.SSSSEEEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTS.EEEEEEEEEESSTTSCTCEEEEEEEEEES.TSEEEEEEEEE-S CS
     CBM_4_9   26 kasvdvs.yngtyslkvsgrgetwdgqaiditirlekgktYtvsfwvkassgk.srtikvkigdtdadganydevadekvelk.gewktlegtFtip 119 
                   ++ +v+ +n++y l       t+    i++ti   +g  Y++sf++k  +g  +  ++ ++ d  +     + ++  +++++ ++w   +  Ft p
  CCE30771.1 1015 NMVKNVEgHNSVYGLSLRTLPPTQYTSSISQTIETVPGALYRFSFYMKPITGGsNSILTSTVSDAVG-----TSIKI-PTNVDiNQWSLKSVMFTAP 1105
                  44445557788888755555558888899999999*************8888623333444444444.....44444.777777***********99 PP

                  SCSCCEEEEEE CS
     CBM_4_9  120 kstdenvelyv 130 
                   +t   v + +
  CCE30771.1 1106 -GTSIVVSFKI 1115
                  .7766666655 PP

  == domain 3  score: 34.3 bits;  conditional E-value: 5.6e-12
                  CBCCCECTSTTSTTTTSEECSSTCEEEEECGCSSSSEEEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTSEEEEEEEEEESSTTSCTCEE CS
     CBM_4_9    1 anllkngtFedgglegWkargkssgkasvdvsyngtyslkvsgrgetwdgqaiditirlekgktYtvsfwvkassgksrtikvkigdtdadganyde 97  
                  anllkng+Fe g l++W + g+ s   +++  +    sl++s  ++     +i++ti+ ++g+ Y++sf++   sg   +  ++ +  da     + 
  CCE30771.1 1404 ANLLKNGDFETGALSPWIPAGTYS--LVAGRNSAHGVSLRTSPSTS--LTSIISQTITTKPGTLYRFSFYMNPISGG-SNSILTCTALDA---VGTS 1492
                  59********************94..33333345777888888877..55566667799************988884.455555555555...3344 PP

                  EEEEEEEESTSEEEEEEEEE-S CS
     CBM_4_9   98 vadekvelkgewktlegtFtip 119 
                  ++  +++ +++w + ++tFt p
  CCE30771.1 1493 IKIPTNVDTNQWSQKSFTFTAP 1514
                  444377888***********99 PP

  == domain 4  score: 32.3 bits;  conditional E-value: 2.3e-11
                  CBCCCECTSTTSTTTTSEECSSTCEEEEECGCSSSSEEEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTSEEEEEEEEEESSTTSCTCEE CS
     CBM_4_9    1 anllkngtFedgglegWkargkssgkasvdvsyngtyslkvsgrgetwdgqaiditirlekgktYtvsfwvkassgksrtikvkigdtdadganyde 97  
                  anl+kng+Fe g +++W + g+ s   +++  +    sl++s  ++     +i++ti+ ++g+ Y++sf+    sg   +  ++ +  da     + 
  CCE30771.1 1629 ANLVKNGDFETGAISPWIPAGTYS--LVAGRNSAHGVSLRTSPSTS--LTSIISQTITTKPGTLYRFSFYLNPISGG-SNSILTCTALDA---VGTS 1717
                  59********************94..33333345777888888877..55566667799************987774.455555555555...3344 PP

                  EEEEEEEESTSEEEEEEEEE-S CS
     CBM_4_9   98 vadekvelkgewktlegtFtip 119 
                  ++  +++ +++w + ++tFt p
  CCE30771.1 1718 IKIPTNVDTNQWSQKSFTFTAP 1739
                  444377888***********99 PP

  == domain 5  score: 34.4 bits;  conditional E-value: 5e-12
                  CBCCCECTSTTSTTTTSEECSSTCEEEEECGCSSSSEEEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTSEEEEEEEEEESSTTSCTCEE CS
     CBM_4_9    1 anllkngtFedgglegWkargkssgkasvdvsyngtyslkvsgrgetwdgqaiditirlekgktYtvsfwvkassgksrtikvkigdtdadganyde 97  
                  anl+kng+Fe g +++W + g+ s   +++  +    sl++s  ++     +i++ti+ ++g+ Y++sf++   sg   +  ++ +  da     + 
  CCE30771.1 1869 ANLVKNGDFETGAISPWIPAGTYS--LVAGRNSAHGVSLRTSPSTS--LTSIISQTITTKPGTLYRFSFYMNPISGG-SNSILTCTALDA---VGTS 1957
                  59********************94..33333345777888888877..55566667799************988884.455555555555...3344 PP

                  EEEEEEEESTSEEEEEEEEE-S CS
     CBM_4_9   98 vadekvelkgewktlegtFtip 119 
                  ++  +++ +++w + ++tFt p
  CCE30771.1 1958 IKIPTNVDTNQWSQKSFTFTAP 1979
                  444377888***********99 PP

  == domain 6  score: 34.3 bits;  conditional E-value: 5.6e-12
                  CBCCCECTSTTSTTTTSEECSSTCEEEEECGCSSSSEEEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTSEEEEEEEEEESSTTSCTCEE CS
     CBM_4_9    1 anllkngtFedgglegWkargkssgkasvdvsyngtyslkvsgrgetwdgqaiditirlekgktYtvsfwvkassgksrtikvkigdtdadganyde 97  
                  anllkng+Fe g l++W + g+ s   +++  +    sl++s  ++     +i++ti+ ++g+ Y++sf++   sg   +  ++ +  da     + 
  CCE30771.1 2096 ANLLKNGDFETGALSPWIPAGTYS--LVAGRNSAHGVSLRTSPSTS--LTSIISQTITTKPGTLYRFSFYMNPISGG-SNSILTCTALDA---VGTS 2184
                  59********************94..33333345777888888877..55566667799************988884.455555555555...3344 PP

                  EEEEEEEESTSEEEEEEEEE-S CS
     CBM_4_9   98 vadekvelkgewktlegtFtip 119 
                  ++  +++ +++w + ++tFt p
  CCE30771.1 2185 IKIPTNVDTNQWSQKSFTFTAP 2206
                  444377888***********99 PP

  == domain 7  score: 33.7 bits;  conditional E-value: 8.7e-12
                  CBCCCECTSTTSTTTTSEECSSTCEEEEECGCSSSSEEEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTSEEEEEEEEEESSTTSCTCEE CS
     CBM_4_9    1 anllkngtFedgglegWkargkssgkasvdvsyngtyslkvsgrgetwdgqaiditirlekgktYtvsfwvkassgksrtikvkigdtdadganyde 97  
                  anl+kng+Fe g l++W + g+ s   +++  +    sl++s  ++     +i++ti+ ++g+ Y++sf++   sg   +  ++ +  da  ++ + 
  CCE30771.1 2353 ANLVKNGDFETGALSPWIPAGTYS--LVAGRNSAHGVSLRTSPSTS--LTSIISQTITTKPGTLYRFSFYMNPISGG-SNSILTCTALDAV-GTSIK 2443
                  59********************94..33333345777888888877..55566667799************988884.4444555555552.23444 PP

                  EEEEEEEESTSEEEEEEEEE-S CS
     CBM_4_9   98 vadekvelkgewktlegtFtip 119 
                  v   +++ +++w + ++tFt p
  CCE30771.1 2444 VP--TNVDTNQWSQKSFTFTAP 2463
                  43..68889***********99 PP

  == domain 8  score: 33.7 bits;  conditional E-value: 8.4e-12
                  CBCCCECTSTTSTTTTSEECSSTCEEEEECGCSSSSEEEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTSEEEEEEEEEESSTTSCTCEE CS
     CBM_4_9    1 anllkngtFedgglegWkargkssgkasvdvsyngtyslkvsgrgetwdgqaiditirlekgktYtvsfwvkassgksrtikvkigdtdadganyde 97  
                  anl+kng+Fe g +++W + g+ s   +++  +    sl++s  ++     +i++ti+ ++g+ Y++sf++   sg   +  ++ +  da  ++ + 
  CCE30771.1 2605 ANLVKNGDFETGAISPWIPAGTYS--LVAGRNSAHGVSLRTSPSTS--LTSIISQTITTKPGTLYRFSFYMNPISGG-SNSILTCTALDAV-GTSIK 2695
                  59********************94..33333345777888888877..55566667799************988884.4444555555552.23444 PP

                  EEEEEEEESTSEEEEEEEEE-S CS
     CBM_4_9   98 vadekvelkgewktlegtFtip 119 
                  v   +++ +++w + ++tFt p
  CCE30771.1 2696 VP--TNVDTNQWSQKSFTFTAP 2715
                  43..68889***********99 PP

  == domain 9  score: 34.4 bits;  conditional E-value: 5e-12
                  CBCCCECTSTTSTTTTSEECSSTCEEEEECGCSSSSEEEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTSEEEEEEEEEESSTTSCTCEE CS
     CBM_4_9    1 anllkngtFedgglegWkargkssgkasvdvsyngtyslkvsgrgetwdgqaiditirlekgktYtvsfwvkassgksrtikvkigdtdadganyde 97  
                  anl+kng+Fe g +++W + g+ s   +++  +    sl++s  ++     +i++ti+ ++g+ Y++sf++   sg   +  ++ +  da     + 
  CCE30771.1 2907 ANLVKNGDFETGAISPWIPAGTYS--LVAGRNSAHGVSLRTSPSTS--LTSIISQTITTKPGTLYRFSFYMNPISGG-SNSILTCTALDA---VGTS 2995
                  59********************94..33333345777888888877..55566667799************988884.455555555555...3344 PP

                  EEEEEEEESTSEEEEEEEEE-S CS
     CBM_4_9   98 vadekvelkgewktlegtFtip 119 
                  ++  +++ +++w + ++tFt p
  CCE30771.1 2996 IKIPTNVDTNQWSQKSFTFTAP 3017
                  444377888***********99 PP

  == domain 10  score: 33.6 bits;  conditional E-value: 9.3e-12
                  CBCCCECTSTTSTTTTSEECSSTCEEEEECGCSSSSEEEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTSEEEEEEEEEESSTTSCTCEE CS
     CBM_4_9    1 anllkngtFedgglegWkargkssgkasvdvsyngtyslkvsgrgetwdgqaiditirlekgktYtvsfwvkassgksrtikvkigdtdadganyde 97  
                  anl+kng+Fe g l++W + g+ s +a      +++  +       t +  +i++ti+ ++g+ Y++sf++   sg   +  ++ +  da     + 
  CCE30771.1 3248 ANLVKNGDFETGALSPWIPAGNYSLVAGR----DSAHGISLRTFPPTSSTGIISQTITTKPGTLYRFSFYMNPISGG-SNSILTCTALDA---VGTS 3336
                  59********************9333333....34444433333337799999999***************988884.455555555555...3344 PP

                  EEEEEEEESTSEEEEEEEEE-S CS
     CBM_4_9   98 vadekvelkgewktlegtFtip 119 
                  ++  +++ +++w + ++tFt p
  CCE30771.1 3337 IKIPTNVDTNQWSQKSFTFTAP 3358
                  444377888***********99 PP

  == domain 11  score: 32.1 bits;  conditional E-value: 2.7e-11
                  BCCCECTSTTSTTTTSEECSSTCEEEEECGCSSSSEEEEEESCSSTTCEEEEEEECCS-TT-EEEEEEEEEESSTSEEEEEEEEEESSTTSCTCEEE CS
     CBM_4_9    2 nllkngtFedgglegWkargkssgkasvdvsyngtyslkvsgrgetwdgqaiditirlekgktYtvsfwvkassgksrtikvkigdtdadganydev 98  
                  nl+ ng+Fe g +++W + g+   +++++  +  + sl++s  ++  +++ ++i  + ++g+ Y++sf++   sg   +  ++ +  d+     + +
  CCE30771.1 3470 NLVQNGDFETGAISPWIPAGTY--SIVAGRDSAHAISLRTSPSTSLSSVISQTI--TTKPGTLYRFSFYMNPISGG-SNSILTCTALDS---VGTSI 3558
                  89*******************9..455544456999999999999888876666..889***********988884.444444444444...22444 PP

                  EEEEEEESTSEEEEEEEEE-S CS
     CBM_4_9   99 adekvelkgewktlegtFtip 119 
                  +  +++ +++w + ++tFt p
  CCE30771.1 3559 KIPTNVGTNQWSQKSFTFTAP 3579
                  44367888***********99 PP

>> DUF642  Protein of unknown function (DUF642)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.3   5.6e+03       1      11 [.     619     629 ..     619     650 .. 0.72
   2 !   20.0   0.0   1.1e-07   0.00048      64     137 ..     662     739 ..     627     749 .. 0.80
   3 !   19.2   0.0   1.8e-07    0.0008      66     137 ..    1041    1114 ..    1029    1128 .. 0.83
   4 ?   -0.7   0.0      0.24   1.1e+03       1      13 [.    1405    1417 ..    1405    1434 .. 0.82
   5 !   14.2   0.0   6.1e-06     0.027      65     134 ..    1449    1520 ..    1420    1539 .. 0.75
   6 ?   -2.2   0.0      0.69   3.1e+03       1      12 [.    1630    1641 ..    1630    1659 .. 0.82
   7 !   14.7   0.0   4.5e-06      0.02      65     134 ..    1674    1745 ..    1644    1765 .. 0.75
   8 ?   -2.2   0.0      0.69   3.1e+03       1      12 [.    1870    1881 ..    1870    1899 .. 0.82
   9 !   14.4   0.0   5.5e-06     0.025      65     134 ..    1914    1985 ..    1884    2005 .. 0.75
  10 ?   -0.7   0.0      0.24   1.1e+03       1      13 [.    2097    2109 ..    2097    2126 .. 0.82
  11 !   14.2   0.0   6.1e-06     0.027      65     134 ..    2141    2212 ..    2112    2231 .. 0.75
  12 ?   -1.8   0.0      0.52   2.3e+03       1      13 [.    2354    2366 ..    2354    2385 .. 0.79
  13 !   13.9   0.0   7.6e-06     0.034      65     135 ..    2398    2470 ..    2369    2489 .. 0.74
  14 ?   -2.2   0.0       0.7   3.1e+03       1      12 [.    2606    2617 ..    2606    2635 .. 0.82
  15 !   13.6   0.0   9.6e-06     0.043      66     134 ..    2651    2721 ..    2624    2740 .. 0.75
  16 ?   -2.2   0.0      0.69   3.1e+03       1      12 [.    2908    2919 ..    2908    2937 .. 0.82
  17 !   14.3   0.0   5.9e-06     0.027      65     134 ..    2952    3023 ..    2923    3042 .. 0.75
  18 ?   -1.7   0.0       0.5   2.2e+03       1      13 [.    3249    3261 ..    3249    3287 .. 0.81
  19 !   16.0   0.0   1.8e-06    0.0079      63     132 ..    3291    3362 ..    3263    3375 .. 0.75
  20 ?   -1.7   0.0       0.5   2.3e+03       1      12 [.    3470    3481 ..    3470    3498 .. 0.85
  21 !   16.9   0.0     9e-07     0.004      56     134 ..    3499    3585 ..    3478    3604 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
      DUF642   1 gllkngdFeeg 11 
                 +l+kngdFe g
  CCE30771.1 619 NLIKNGDFELG 629
                 689******87 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1.1e-07
      DUF642  64 ndasisQtlsvakgsvYsltFsla...rtcaqe.eklnvsvapes.gelslqtlyskegwdsyawaFkaeeeevtlvfe 137
                 +++sisQt+++++g+ Y l+F +      ++++  + + s+ ++    +++ t+  ++ w  ++++F+a ++++ ++f+
  CCE30771.1 662 DASSISQTIDTVPGTLYRLSFYMNpisG-GSNSmLTCTASAVNAVgVSIKIPTNVDTNRWSLRSFTFTAPGTSIVVEFK 739
                 5789*******************98742.3332133333333333367999999***************9999999986 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 1.8e-07
      DUF642   66 asisQtlsvakgsvYsltFslartcaqeekl.nvsvapes.gelslqtlyskegwdsyawaFkaeeeevtlvfe 137 
                  +sisQt+++++g+ Y  +F +   +  ++++ + +v+++    +++ t+   ++w  ++++F+a ++++ ++f+
  CCE30771.1 1041 SSISQTIETVPGALYRFSFYMKPITGGSNSIlTSTVSDAVgTSIKIPTNVDINQWSLKSVMFTAPGTSIVVSFK 1114
                  79********************5555555550555555445789999*****************9999999996 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.24
      DUF642    1 gllkngdFeegpk 13  
                  +llkngdFe+g+ 
  CCE30771.1 1405 NLLKNGDFETGAL 1417
                  68*******9864 PP

  == domain 5  score: 14.2 bits;  conditional E-value: 6.1e-06
      DUF642   65 dasisQtlsvakgsvYsltFslartcaqe.eklnvsvapes.gelslqtlyskegwdsyawaFkaeeeevtl 134 
                   + isQt+++++g+ Y  +F +      +   l+ ++ ++    +++ t+  +++w +++++F+a + ++ +
  CCE30771.1 1449 TSIISQTITTKPGTLYRFSFYMNPISGGSnSILTCTALDAVgTSIKIPTNVDTNQWSQKSFTFTAPGASIIV 1520
                  4569*******************4444440444555544444789999*****************8877755 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 0.69
      DUF642    1 gllkngdFeegp 12  
                  +l+kngdFe+g+
  CCE30771.1 1630 NLVKNGDFETGA 1641
                  589******985 PP

  == domain 7  score: 14.7 bits;  conditional E-value: 4.5e-06
      DUF642   65 dasisQtlsvakgsvYsltFslartcaqe.eklnvsvapes.gelslqtlyskegwdsyawaFkaeeeevtl 134 
                   + isQt+++++g+ Y  +F l      +   l+ ++ ++    +++ t+  +++w +++++F+a + ++ +
  CCE30771.1 1674 TSIISQTITTKPGTLYRFSFYLNPISGGSnSILTCTALDAVgTSIKIPTNVDTNQWSQKSFTFTAPGASIIV 1745
                  4569*******************4444440444555544444789999*****************8887765 PP

  == domain 8  score: -2.2 bits;  conditional E-value: 0.69
      DUF642    1 gllkngdFeegp 12  
                  +l+kngdFe+g+
  CCE30771.1 1870 NLVKNGDFETGA 1881
                  589******985 PP

  == domain 9  score: 14.4 bits;  conditional E-value: 5.5e-06
      DUF642   65 dasisQtlsvakgsvYsltFslartcaqe.eklnvsvapes.gelslqtlyskegwdsyawaFkaeeeevtl 134 
                   + isQt+++++g+ Y  +F +      +   l+ ++ ++    +++ t+  +++w +++++F+a + ++ +
  CCE30771.1 1914 TSIISQTITTKPGTLYRFSFYMNPISGGSnSILTCTALDAVgTSIKIPTNVDTNQWSQKSFTFTAPGASIIV 1985
                  4569*******************4444440444555544444789999*****************8887765 PP

  == domain 10  score: -0.7 bits;  conditional E-value: 0.24
      DUF642    1 gllkngdFeegpk 13  
                  +llkngdFe+g+ 
  CCE30771.1 2097 NLLKNGDFETGAL 2109
                  68*******9864 PP

  == domain 11  score: 14.2 bits;  conditional E-value: 6.1e-06
      DUF642   65 dasisQtlsvakgsvYsltFslartcaqe.eklnvsvapes.gelslqtlyskegwdsyawaFkaeeeevtl 134 
                   + isQt+++++g+ Y  +F +      +   l+ ++ ++    +++ t+  +++w +++++F+a + ++ +
  CCE30771.1 2141 TSIISQTITTKPGTLYRFSFYMNPISGGSnSILTCTALDAVgTSIKIPTNVDTNQWSQKSFTFTAPGASIIV 2212
                  4569*******************4444440444555544444789999*****************8877755 PP

  == domain 12  score: -1.8 bits;  conditional E-value: 0.52
      DUF642    1 gllkngdFeegpk 13  
                  +l+kngdFe+g+ 
  CCE30771.1 2354 NLVKNGDFETGAL 2366
                  589******9865 PP

  == domain 13  score: 13.9 bits;  conditional E-value: 7.6e-06
      DUF642   65 dasisQtlsvakgsvYsltFslartcaqe.eklnvsvapes.gelslqtlyskegwdsyawaFkaeeeevtlv 135 
                   + isQt+++++g+ Y  +F +      +   l+ ++ ++    +++ t+  +++w +++++F+a + ++ + 
  CCE30771.1 2398 TSIISQTITTKPGTLYRFSFYMNPISGGSnSILTCTALDAVgTSIKVPTNVDTNQWSQKSFTFTAPGASIIVG 2470
                  4569*******************44444404444444444447899999****************88877665 PP

  == domain 14  score: -2.2 bits;  conditional E-value: 0.7
      DUF642    1 gllkngdFeegp 12  
                  +l+kngdFe+g+
  CCE30771.1 2606 NLVKNGDFETGA 2617
                  589******985 PP

  == domain 15  score: 13.6 bits;  conditional E-value: 9.6e-06
      DUF642   66 asisQtlsvakgsvYsltFslartcaqe.eklnvsvapes.gelslqtlyskegwdsyawaFkaeeeevtl 134 
                  + isQt+++++g+ Y  +F +      +   l+ ++ ++    +++ t+  +++w +++++F+a + ++ +
  CCE30771.1 2651 SIISQTITTKPGTLYRFSFYMNPISGGSnSILTCTALDAVgTSIKVPTNVDTNQWSQKSFTFTAPGASIIV 2721
                  569*******************44444404444444444447899999****************8877755 PP

  == domain 16  score: -2.2 bits;  conditional E-value: 0.69
      DUF642    1 gllkngdFeegp 12  
                  +l+kngdFe+g+
  CCE30771.1 2908 NLVKNGDFETGA 2919
                  589******985 PP

  == domain 17  score: 14.3 bits;  conditional E-value: 5.9e-06
      DUF642   65 dasisQtlsvakgsvYsltFslartcaqe.eklnvsvapes.gelslqtlyskegwdsyawaFkaeeeevtl 134 
                   + isQt+++++g+ Y  +F +      +   l+ ++ ++    +++ t+  +++w +++++F+a + ++ +
  CCE30771.1 2952 TSIISQTITTKPGTLYRFSFYMNPISGGSnSILTCTALDAVgTSIKIPTNVDTNQWSQKSFTFTAPGASIIV 3023
                  4569*******************4444440444555544444789999*****************8877755 PP

  == domain 18  score: -1.7 bits;  conditional E-value: 0.5
      DUF642    1 gllkngdFeegpk 13  
                  +l+kngdFe+g+ 
  CCE30771.1 3249 NLVKNGDFETGAL 3261
                  589******9864 PP

  == domain 19  score: 16.0 bits;  conditional E-value: 1.8e-06
      DUF642   63 gndasisQtlsvakgsvYsltFslartcaqe.eklnvsvapes.gelslqtlyskegwdsyawaFkaeeeev 132 
                  ++ + isQt+++++g+ Y  +F +      +   l+ ++ ++    +++ t+  +++w +++++F+a + ++
  CCE30771.1 3291 SSTGIISQTITTKPGTLYRFSFYMNPISGGSnSILTCTALDAVgTSIKIPTNVDTNQWSQKSFTFTAPGASI 3362
                  58899********************4444440444555544444789999*****************88766 PP

  == domain 20  score: -1.7 bits;  conditional E-value: 0.5
      DUF642    1 gllkngdFeegp 12  
                  +l++ngdFe+g+
  CCE30771.1 3470 NLVQNGDFETGA 3481
                  689******985 PP

  == domain 21  score: 16.9 bits;  conditional E-value: 9e-07
      DUF642   56 gahavrL......gndasisQtlsvakgsvYsltFslartcaqeeklnvsvapes..gelslqtlyskegwdsyawaFkaeeeevtl 134 
                   aha+ L      + ++ isQt+++++g+ Y  +F +      ++++   +a +s    +++ t+ ++++w +++++F+a + ++ +
  CCE30771.1 3499 SAHAISLrtspstSLSSVISQTITTKPGTLYRFSFYMNPISGGSNSILTCTALDSvgTSIKIPTNVGTNQWSQKSFTFTAPGPSIIV 3585
                  577888855444336778********************5555555555544444435789999*****************8877655 PP

>> DUF3127  Domain of unknown function (DUF3127)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.15   6.8e+02      51      77 ..    1486    1510 ..    1482    1512 .. 0.87
   2 ?    0.6   0.0      0.15   6.8e+02      51      77 ..    1711    1735 ..    1707    1737 .. 0.87
   3 ?    0.6   0.0      0.15   6.8e+02      51      77 ..    1951    1975 ..    1947    1977 .. 0.87
   4 ?    0.6   0.0      0.15   6.8e+02      51      77 ..    2178    2202 ..    2174    2204 .. 0.87
   5 ?    1.6   0.0     0.075   3.4e+02      51      77 ..    2435    2459 ..    2431    2461 .. 0.87
   6 ?    1.6   0.0     0.075   3.4e+02      51      77 ..    2687    2711 ..    2683    2713 .. 0.87
   7 ?    0.6   0.0      0.15   6.8e+02      51      77 ..    2989    3013 ..    2985    3015 .. 0.87
   8 ?    0.6   0.0      0.15   6.8e+02      51      77 ..    3330    3354 ..    3326    3356 .. 0.87
   9 ?   -0.9   0.0      0.44     2e+03      51      77 ..    3551    3575 ..    3547    3577 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.15
     DUF3127   51 ldklqvgdevkvsfnlegrewngkyfn 77  
                  ld  +vg ++k+  n++  +w +k f+
  CCE30771.1 1486 LD--AVGTSIKIPTNVDTNQWSQKSFT 1510
                  55..79*****************9997 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.15
     DUF3127   51 ldklqvgdevkvsfnlegrewngkyfn 77  
                  ld  +vg ++k+  n++  +w +k f+
  CCE30771.1 1711 LD--AVGTSIKIPTNVDTNQWSQKSFT 1735
                  55..79*****************9997 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.15
     DUF3127   51 ldklqvgdevkvsfnlegrewngkyfn 77  
                  ld  +vg ++k+  n++  +w +k f+
  CCE30771.1 1951 LD--AVGTSIKIPTNVDTNQWSQKSFT 1975
                  55..79*****************9997 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.15
     DUF3127   51 ldklqvgdevkvsfnlegrewngkyfn 77  
                  ld  +vg ++k+  n++  +w +k f+
  CCE30771.1 2178 LD--AVGTSIKIPTNVDTNQWSQKSFT 2202
                  55..79*****************9997 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.075
     DUF3127   51 ldklqvgdevkvsfnlegrewngkyfn 77  
                  ld  +vg ++kv  n++  +w +k f+
  CCE30771.1 2435 LD--AVGTSIKVPTNVDTNQWSQKSFT 2459
                  55..79*****************9997 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.075
     DUF3127   51 ldklqvgdevkvsfnlegrewngkyfn 77  
                  ld  +vg ++kv  n++  +w +k f+
  CCE30771.1 2687 LD--AVGTSIKVPTNVDTNQWSQKSFT 2711
                  55..79*****************9997 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.15
     DUF3127   51 ldklqvgdevkvsfnlegrewngkyfn 77  
                  ld  +vg ++k+  n++  +w +k f+
  CCE30771.1 2989 LD--AVGTSIKIPTNVDTNQWSQKSFT 3013
                  55..79*****************9997 PP

  == domain 8  score: 0.6 bits;  conditional E-value: 0.15
     DUF3127   51 ldklqvgdevkvsfnlegrewngkyfn 77  
                  ld  +vg ++k+  n++  +w +k f+
  CCE30771.1 3330 LD--AVGTSIKIPTNVDTNQWSQKSFT 3354
                  55..79*****************9997 PP

  == domain 9  score: -0.9 bits;  conditional E-value: 0.44
     DUF3127   51 ldklqvgdevkvsfnlegrewngkyfn 77  
                  ld  +vg ++k+  n+   +w +k f+
  CCE30771.1 3551 LD--SVGTSIKIPTNVGTNQWSQKSFT 3575
                  55..799****************9987 PP

>> DUF531  Protein of unknown function (DUF531)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       0.9     4e+03     133     162 ..     673     702 ..     672     709 .. 0.82
   2 ?    2.8   0.1     0.024   1.1e+02     134     168 ..    1460    1494 ..    1441    1495 .. 0.86
   3 ?    2.2   0.1     0.039   1.7e+02     134     168 ..    1685    1719 ..    1667    1720 .. 0.85
   4 ?    2.8   0.1     0.024   1.1e+02     134     168 ..    1925    1959 ..    1906    1960 .. 0.86
   5 ?    2.8   0.1     0.024   1.1e+02     134     168 ..    2152    2186 ..    2133    2187 .. 0.86
   6 ?    2.9   0.1     0.023     1e+02     134     168 ..    2409    2443 ..    2390    2444 .. 0.86
   7 ?    2.9   0.1     0.023     1e+02     134     168 ..    2661    2695 ..    2642    2696 .. 0.86
   8 ?    2.8   0.1     0.024   1.1e+02     134     168 ..    2963    2997 ..    2944    2998 .. 0.86
   9 ?    2.5   0.1      0.03   1.4e+02     134     168 ..    3304    3338 ..    3295    3339 .. 0.88
  10 ?    2.0   0.1     0.043   1.9e+02     134     168 ..    3525    3559 ..    3510    3560 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.9
      DUF531 133 lPkellklakyhlditekgvslEtctAiga 162
                 +P  l++l+ y   i++ + s+ tctA ++
  CCE30771.1 673 VPGTLYRLSFYMNPISGGSNSMLTCTASAV 702
                 57788889999999************9665 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.024
      DUF531  134 PkellklakyhlditekgvslEtctAigaiaavia 168 
                  P  l++ + y   i++ + s+ tctA+ a+ + i+
  CCE30771.1 1460 PGTLYRFSFYMNPISGGSNSILTCTALDAVGTSIK 1494
                  7778888999999*****************99986 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.039
      DUF531  134 PkellklakyhlditekgvslEtctAigaiaavia 168 
                  P  l++ + y   i++ + s+ tctA+ a+ + i+
  CCE30771.1 1685 PGTLYRFSFYLNPISGGSNSILTCTALDAVGTSIK 1719
                  6677888888889999**************99986 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.024
      DUF531  134 PkellklakyhlditekgvslEtctAigaiaavia 168 
                  P  l++ + y   i++ + s+ tctA+ a+ + i+
  CCE30771.1 1925 PGTLYRFSFYMNPISGGSNSILTCTALDAVGTSIK 1959
                  7778888999999*****************99986 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.024
      DUF531  134 PkellklakyhlditekgvslEtctAigaiaavia 168 
                  P  l++ + y   i++ + s+ tctA+ a+ + i+
  CCE30771.1 2152 PGTLYRFSFYMNPISGGSNSILTCTALDAVGTSIK 2186
                  7778888999999*****************99986 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.023
      DUF531  134 PkellklakyhlditekgvslEtctAigaiaavia 168 
                  P  l++ + y   i++ + s+ tctA+ a+ + i+
  CCE30771.1 2409 PGTLYRFSFYMNPISGGSNSILTCTALDAVGTSIK 2443
                  7778888999999*****************99986 PP

  == domain 7  score: 2.9 bits;  conditional E-value: 0.023
      DUF531  134 PkellklakyhlditekgvslEtctAigaiaavia 168 
                  P  l++ + y   i++ + s+ tctA+ a+ + i+
  CCE30771.1 2661 PGTLYRFSFYMNPISGGSNSILTCTALDAVGTSIK 2695
                  7778888999999*****************99986 PP

  == domain 8  score: 2.8 bits;  conditional E-value: 0.024
      DUF531  134 PkellklakyhlditekgvslEtctAigaiaavia 168 
                  P  l++ + y   i++ + s+ tctA+ a+ + i+
  CCE30771.1 2963 PGTLYRFSFYMNPISGGSNSILTCTALDAVGTSIK 2997
                  7778888999999*****************99986 PP

  == domain 9  score: 2.5 bits;  conditional E-value: 0.03
      DUF531  134 PkellklakyhlditekgvslEtctAigaiaavia 168 
                  P  l++ + y   i++ + s+ tctA+ a+ + i+
  CCE30771.1 3304 PGTLYRFSFYMNPISGGSNSILTCTALDAVGTSIK 3338
                  66778888899999****************99986 PP

  == domain 10  score: 2.0 bits;  conditional E-value: 0.043
      DUF531  134 PkellklakyhlditekgvslEtctAigaiaavia 168 
                  P  l++ + y   i++ + s+ tctA+ ++ + i+
  CCE30771.1 3525 PGTLYRFSFYMNPISGGSNSILTCTALDSVGTSIK 3559
                  66788888899999****************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.56u 0.30s 00:00:01.86 Elapsed: 00:00:00.46
# Mc/sec: 23832.29
//
Query:       CCE30772.1  [L=590]
Description: uncharacterized protein CPUR_04621 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-10   39.7   0.2    2.9e-08   34.3   0.2    2.7  1  Methyltransf_25  Methyltransferase domain
    1.5e-09   37.7   0.0    1.9e-08   34.1   0.0    2.2  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
      4e-08   33.9   0.0    1.5e-07   32.1   0.0    2.0  1  Methyltransf_12  Methyltransferase domain
    1.2e-07   32.3   0.4      8e-06   26.4   0.4    2.6  1  Methyltransf_11  Methyltransferase domain
    0.00042   19.9   0.0    0.00093   18.8   0.0    1.5  1  MTS              Methyltransferase small domain
    0.00056   19.5   0.0       0.88    9.1   0.0    3.2  2  ATP-grasp_4      ATP-grasp domain
    0.00062   19.6   0.0     0.0019   18.0   0.0    1.6  1  Methyltransf_31  Methyltransferase domain
     0.0044   16.9   0.0      0.009   15.9   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.052   12.9   0.0      0.085   12.2   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.074   13.1   0.1        0.5   10.4   0.1    2.1  1  ATP-grasp_3      ATP-grasp domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.2   1.6e-11   2.9e-08       1      80 [.     389     487 ..     389     499 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.6e-11
                      EEEET-TTSHHHHHHHCT....................S..TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEES CS
  Methyltransf_25   1 vLdlGcGtGrltlalakr....................l..gkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssg 72 
                      +LdlGcGtG + +ala+                        g ++++g+Dis++ml+ +r+    + l+++ +q+ + +l    +++D v++s 
       CCE30772.1 389 ILDLGCGTGAVGRALAQCqkyqqcdstsssssssapvsHqkGIYRLLGCDISPGMLDVCRKTGLYAYLHLNTIQATLMNLT---ETVDHVICSS 479
                      8***************999**************9997624459********************989889999*99999997...78******97 PP

                      TGGGSSHH CS
  Methyltransf_25  73 alhhlsde 80 
                      +lh++++e
       CCE30772.1 480 VLHLVEPE 487
                      79998865 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.21   3.8e+02      35      67 ..     120     155 ..     100     162 .. 0.76
   2 !   34.1   0.0     1e-11   1.9e-08      63     176 ..     181     303 ..     175     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.21
                      C-SSEEEEESSSSTTTTE...EEESSGGGHHHHHHH CS
  Dala_Dala_lig_C  35 lgypvfVKpareGSSvGv...skveseeelkeaiee 67 
                        +p+fVKp     S  +   s ++++eel +a+++
       CCE30772.1 120 ERFPLFVKPGFGSASQLIddrSVCRNQEELDSALRR 155
                      579******876666655433568888888888876 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 1e-11
                      HHHHHHHTT-SCEEEEE--ESEEEEEEEEETSS......CEEEEEEEEE-SSSSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT CS
  Dala_Dala_lig_C  63 eaieeafkydekvlvEeaiegreievavlgnek......levsevgeivvkkgfydyeakysddkaqlevpaklekeveekiqelalkaykald 150
                      + +e+a +  e+++v e+ieg++  + v++ ++      + v  +++  +k++f  ++ak+ d +    ++ k +++  e++q++a++a+ a +
       CCE30772.1 181 RSLEAAGRDSEDIVVQEYIEGKDYGCVVVQLGQscvalaPYVYRMKALPQKEQFLTFAAKFDDGTYPELLRKKDDAALFERLQQAAIEAFGASS 274
                      6789999999******************996662111112333444444555*********9888888899999999***************** PP

                      --SE...EEEEEEEETTTEEEEEEEESS- CS
  Dala_Dala_lig_C 151 lrGl...aRvDfflteegeivlnEvNtlP 176
                      ++     + vD+ +t++g++++ EvN+ P
       CCE30772.1 275 CKENntgCDVDLRVTADGQVFVIEVNPHP 303
                      *97533489******************99 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   8.4e-11   1.5e-07       1      81 [.     390     487 ..     390     501 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 8.4e-11
  Methyltransf_12   1 LeiGcGtGsllrallekl......................pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvva 72 
                      L++GcGtG++ ral++                           +++g+Disp ++ d  +k+  +  ++ n ++ +  +l +     ++D v++
       CCE30772.1 390 LDLGCGTGAVGRALAQCQkyqqcdstsssssssapvshqkGIYRLLGCDISPGML-DVCRKTGLYAYLHLNTIQATLMNLTE-----TVDHVIC 477
                      8************************************997778889*********.*************9999999999874.....9****** PP

  Methyltransf_12  73 snvlhhl.kd 81 
                      s+vlh + ++
       CCE30772.1 478 SSVLHLVePE 487
                      *****99544 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.4   4.5e-09     8e-06       1      75 [.     390     485 ..     390     494 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 4.5e-09
                      EEET-TTSHHHHHHH.......................HTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES- CS
  Methyltransf_11   1 LdvGcGtGrlaeala.......................krg.arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssev 70 
                      Ld+GcGtG++ +ala                       ++g +r++g+D+s+ ml+++++ +  ++l+++ ++a++ +l    +++D v++s+v
       CCE30772.1 390 LDLGCGTGAVGRALAqcqkyqqcdstsssssssapvshQKGiYRLLGCDISPGMLDVCRKTGLYAYLHLNTIQATLMNL---TETVDHVICSSV 480
                      899999999999999999999999998888888777766669***********************99888899999885...46********** PP

                      CCC-C CS
  Methyltransf_11  71 lhhve 75 
                      lh ve
       CCE30772.1 481 LHLVE 485
                      **994 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   5.2e-07   0.00093      21      61 ..     373     415 ..     364     431 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.2e-07
                 HHHHHHCHCC..TCSEEEEET-TTSHHHHHHHHHTTC.EEEEE CS
         MTS  21 klLletlpke..lsgkvlDlGcGaGvlgaalakespeaevtlv 61 
                 k +l +l ++  +sg++lDlGcG+G++g ala+ ++ ++ + +
  CCE30772.1 373 KQMLAKLVETydFSGTILDLGCGTGAVGRALAQCQKYQQCDST 415
                 45555666556899******************98877666554 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0097        17       3      38 ..     122     160 ..     120     213 .. 0.68
   2 !    9.1   0.0   0.00049      0.88     127     151 ..     278     302 ..     256     308 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0097
  ATP-grasp_4   3 lPvviKPsvgffSlGV...ykinneeewkaavaaieeel 38 
                  +P+ +KP  g++S+ +   ++++n+ee+++a+++++e l
   CCE30772.1 122 FPLFVKPGFGSASQLIddrSVCRNQEELDSALRRMHEAL 160
                  788888888888887744447888888888888887654 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00049
  ATP-grasp_4 127 knfpvHiElrvsedgkiipiEvnpl 151
                  +n  + + lrv++dg++++iEvnp 
   CCE30772.1 278 NNTGCDVDLRVTADGQVFVIEVNPH 302
                  66777899***************96 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     1e-06    0.0019       6      87 ..     388     484 ..     386     487 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1e-06
  Methyltransf_31   6 rvlDlGCGtGeltfelae.elgpkae....................vvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDl 77 
                      ++lDlGCGtG+ + +la+ + +++++                    + G Dis+ ++ ++r+     gl  + ++   i++ l + l+ e++D 
       CCE30772.1 388 TILDLGCGTGAVGRALAQcQKYQQCDstsssssssapvshqkgiyrLLGCDISPGMLDVCRKT----GLY-AYLHLNTIQAtLMN-LT-ETVDH 474
                      69***************9955555555566677777888899999999999999999999994....553.56777777774443.45.78999 PP

  Methyltransf_31  78 ilsnevlnal 87 
                      +++ +vl+++
       CCE30772.1 475 VICSSVLHLV 484
                      9999999765 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     5e-06     0.009       2      93 ..     362     482 ..     361     495 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5e-06
  Methyltransf_23   2 daqre...eelsdklerllpklraggrvLdiGcGtGil.......................levlrengf.svtgvDlspeaveiae..kakka 66 
                      d+++    + +++ l++l+++ + +g +Ld+GcGtG +                       ++v  ++g   + g D+sp + +  +  + + +
       CCE30772.1 362 DHFVDtgdMTVKQMLAKLVETYDFSGTILDLGCGTGAVgralaqcqkyqqcdstsssssssAPVSHQKGIyRLLGCDISPGMLDVCRktGLYAY 455
                      566666667888999999999999**************44444433333333333333333333333444477777777766665555533333 PP

  Methyltransf_23  67 qkdqfdeqeaaepqgkfdlIvlrevle 93 
                       + ++ +    +  ++ d ++++ vl+
       CCE30772.1 456 LHLNTIQATLMNLTETVDHVICSSVLH 482
                      333333333334455555555555555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.7e-05     0.085       9     112 ..     350     470 ..     340     481 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.7e-05
                      XXXXXX-HHHHHHHHHHHHHTTTHHHHHHHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHH.....................EEEEEES- CS
  Ubie_methyltran   9 vkevfesvaskyDlmndvlslgihrlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekg.....................kvvvlDin 81 
                      v++ ++ +a kyD   d   + + ++  k ve  +    + ++lD+ +Gtg +  +l++  + +                      ++ ++Di+
       CCE30772.1 350 VASKYDDMAPKYDHFVDTGDMTVKQMLAKLVETYDF---SGTILDLGCGTGAVGRALAQCQKYQQcdstsssssssapvshqkgiyRLLGCDIS 440
                      555666777777777777666666666555554443...458***************9998877789999************************ PP

                      HHHHHHHHHHHHHHTSSTEEEEE--TTT-TT CS
  Ubie_methyltran  82 enmLkvgekklkeegkinieflqanaeeLpf 112
                      + mL+v +k     ++ +++ +qa  ++L +
       CCE30772.1 441 PGMLDVCRKT-GLYAYLHLNTIQATLMNLTE 470
                      ******9864.45677777777777777765 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00028       0.5      64     157 ..     191     302 ..     170     305 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00028
                  ...EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET.............TEEEEEEES----H...HHHHHHHHHHHHTTST..T--.EEEEEEE.. CS
  ATP-grasp_3  64 e..lvqefieGkplSvsllsdgekvlvlavnrqliekaeke.........fvyaGnvtpietel...keevvelaeevvekle..gla.GyvGvDl.. 142
                  e  +vqe+ieGk++   ++  g+   ++a+ + +  ++ +           ++  ++ p   ++   +  +++l + ++e++   +++    G D+  
   CCE30772.1 191 EdiVVQEYIEGKDYGCVVVQLGQS--CVALAPYVYRMKALPqkeqfltfaAKFDDGTYPELLRKkddAALFERLQQAAIEAFGasSCKeNNTGCDVdl 286
                  2349***********999997755..555555555443333457898888555545555443331323334556666677773332221234655533 PP

                  .EESS.SEEEEEEESS CS
  ATP-grasp_3 143 .vlkdeepyviEvNPR 157
                   v +d++  viEvNP 
   CCE30772.1 287 rVTADGQVFVIEVNPH 302
                  5677899999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4513.32
//
Query:       CCE30773.1  [L=114]
Description: probable ribosomal protein S16, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-22   79.4   0.0    2.1e-22   78.9   0.0    1.2  1  Ribosomal_S16  Ribosomal protein S16


Domain annotation for each model (and alignments):
>> Ribosomal_S16  Ribosomal protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   1.2e-26   2.1e-22       1      62 []       9      77 ..       9      77 .. 0.93

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 1.2e-26
                   EESCTTCEEEEEEEEETTSSTTSSESEEEEEEETTTTSSTS.S.......EEE-HHHHHHHHHTTEEEE CS
  Ribosomal_S16  1 RfGrknrPfYrivvadsrkprdgrpiEklGtYdPlakkkekke.......velneerikyWlgvGAqpt 62
                   RfGrk +PfY+ivva++r++  ++p+E+lGtYdPl+k + +         v+l++ r+kyW+gvGAqpt
     CCE30773.1  9 RFGRKSSPFYNIVVAHARTAPTSKPLEVLGTYDPLPKLDPYDDsgklhkdVKLDVPRAKYWVGVGAQPT 77
                   9*********************************8887766336889999******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       181  (0.0100954); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 850.87
//
Query:       CCE30774.1  [L=235]
Description: related to human TGR-CL10C [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-33  116.6   0.0    1.3e-33  116.3   0.0    1.1  1  YjeF_N    YjeF-related protein N-terminus
  ------ inclusion threshold ------
      0.067   13.2   0.1       0.11   12.6   0.1    1.3  1  SL4P      Uncharacterized Strongylid L4 protein


Domain annotation for each model (and alignments):
>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0   1.4e-37   1.3e-33       2     170 ..      27     189 ..      26     190 .. 0.93

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 1.4e-37
      YjeF_N   2 eeLmenagravaevlrallgnspaekkvlvlvGsgnnGgdglaaArhLaqegakVtvllleeeekldedaeralellkkaggkvveekpeedleeklsa 100
                 ++Lme ag +v++++ +     ++++++lv +G+gnnGgdgl+aArhL + g+k tv  + ++++ ++  +r  ++l+++++ +v + +++ +      
  CCE30774.1  27 DQLMELAGLSVSQAVSRVQ-PLNKGRRILVACGPGNNGGDGLVAARHLFHYGYKPTV--FYPKKSKNDLYQRLTKQLEELKVPFVDDFESALK------ 116
                 68***********998877.57***********************************..6788999*******************76655554...... PP

      YjeF_N 101 pvdlviDAllGiglrgelreelaeliewlnsseapvlavDiPSGldadtGavs...gtavkadvtvtfgapkr 170
                 + d v+DA++G++++ge+re++  +i++l +++ pv +vD PS ++ ++G ++   g  + +++ v+++apk+
  CCE30774.1 117 STDHVVDAIFGFSFSGEVREPFPGVIQSLETTKLPVTSVDAPSSWNIEDGPPKsglGSSFMPTALVSLTAPKP 189
                 49**************************************************9666666*************7 PP

>> SL4P  Uncharacterized Strongylid L4 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.2e-05      0.11      24      44 ..      87     107 ..      74     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
        SL4P  24 kDkddLfekfkkklkelgipl 44 
                 k k+dL++ + k+l+el++p+
  CCE30774.1  87 KSKNDLYQRLTKQLEELKVPF 107
                 789****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1694.86
//
Query:       CCE30775.1  [L=545]
Description: probable proline-specific permease (proline transport protein) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.3e-129  430.3  43.6     1e-128  430.0  43.6    1.0  1  AA_permease    Amino acid permease
    7.7e-32  110.6  47.7      1e-31  110.3  47.7    1.1  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
       0.21   12.2   0.4          1    9.9   0.0    2.2  2  Pet100         Pet100


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  430.0  43.6  1.7e-132    1e-128       1     472 [.      41     503 ..      41     506 .. 0.97

  Alignments for each domain:
  == domain 1  score: 430.0 bits;  conditional E-value: 1.7e-132
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp.ksggfytyasrflgpelGfviGlnylfswitvlaleltaa 97 
                  h+++ algg+iGtglfvg+g++ls+ Gp+ ++ ayl +++v++ vm+sl+e++t+ p ++    +++ rf++p+lGf+ G+ny++ +++ +++e taa
   CCE30775.1  41 HIQFLALGGAIGTGLFVGSGNILSTTGPAPLFMAYLSMMLVVWVVMNSLAEMVTYLPmRGITVPYFVDRFVDPSLGFAAGWNYWYAYAMLIGAEATAA 138
                  99*******************************************************9999************************************* PP

  AA_permease  98 siliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga..gfrflgdngsifknnlppgfake 193
                  +i+i +w     ++ + v+++++l+v+l++n+++v ++geaef++a+ik+i+ii++ii+g ++ +gg+pn++   gf++++d+g+ f ++ ++g    
   CCE30775.1 139 GIIIDYW--GANVN-IAVWITIVLLVILLLNIIAVSFFGEAEFWFASIKLITIIGLIIMGLVIFFGGGPNQDKvlGFHYWNDPGA-FVDYKVAG---- 228
                  *******..55555.89*******************************************************99***********.44444444.... PP

  AA_permease 194 eegafknfisvfvivvfaft.GielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.....aspfvifikesgv 285
                   +g+f++   +fv + faf  + el+ai+agE+ dP+++iPka +++v+r+++fY l++l+ig++vp nd++ll ++ ++     aspfvi i++ g+
   CCE30775.1 229 PTGRFLGYWKAFVSAGFAFItSPELIAIAAGETIDPRRNIPKAARRFVWRLAVFYGLGSLVIGIMVPSNDPTLLGAAKEGksdasASPFVIGIQNVGI 326
                  789***************966******************************************************99999****************** PP

  AA_permease 286 svlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlli 383
                  +vl++++na+ilt+a+s++ns+lys+sR+lys++ +g aPk+++  +++gvP+ ail++++i+lla+l+ s + +  +vf+++++is+++g+i w+++
   CCE30775.1 327 PVLNHIVNAAILTSAWSAGNSFLYSGSRILYSMSLNGQAPKIFRATNRNGVPWLAILATWAIGLLAYLNVSNSGS--TVFTWFSNISTISGFIAWIVV 422
                  *******************************************************************88888888..********************* PP

  AA_permease 384 ilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvkn 472
                  +++ylrfR+a++ ++  +++l+++++l+p+ ++ +l++++++++++++  +++       ++a++f+aay+++++fl++++g+k+++++
   CCE30775.1 423 LITYLRFRRAMEFNNL-LDSLPYRTPLQPYVSYAALVVISLLTITNGFHTFMP-------FSAQDFVAAYITIPIFLVLYLGHKVWFRT 503
                  **********999999.************************************.......999************************97 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3  47.7   1.7e-35     1e-31       8     404 ..      44     472 ..      38     496 .. 0.80

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 1.7e-35
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaEl.ssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaa 100
                    +l++g +ig+g fv +   + ++gpa ++   ++++++++ v+  +aE+ ++++ r  ++  ++ ++  + ++f ++w +w+ay+  + +  + aa
     CCE30775.1  44 FLALGGAIGTGLFVGSgnILSTTGPAPLFMAYLSMMLVVWVVMNSLAEMvTYLPMRGITVPYFVDRFVDPSLGFAAGWNYWYAYAMLI-GAEATAA 138
                    899***********99965666****9999999999999**********777688888***************************944.6668899 PP

  AA_permease_2 101 syllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.stetdtffpngwpgv..... 190
                    + ++  +g +++     +++i i +l+++ l+ni++++  + + ++ + +k+ +++i lii gl+++ ggg ++  +   ++++  g         
     CCE30775.1 139 GIIIDYWGANVNI----AVWITI-VLLVILLLNIIAVSFFGEAEFWFASIKL-ITIIGLIIMGLVIFFGGGPNQDkVLGFHYWNDPGAFVDykvag 228
                    9999999977644....445444.46777899********************.8*************99998877855555544442222122233 PP

  AA_permease_2 191 ........llgllivlwsf.dGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddei........anlsnlgsvaalffeav 267
                            + ++  + ++f +  e +a  + e  ++++++pka+   +   +v+y l ++++ + vp +           +++ + s++ +  ++v
     CCE30775.1 229 ptgrflgyWKAFVSAGFAFiTSPELIAIAAGEtiDPRRNIPKAARRFVWRLAVFYGLGSLVIGIMVPSNDPtllgaakeGKSDASASPFVIGIQNV 324
                    33344444778888766661567*********99999*******9999999999*999999988888877667999988677778999******** PP

  AA_permease_2 268 ggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyl 363
                    g +v+ +iv+++i  s++ a+n+++++ sr+l++++  g  P+ f+ +n++g p+ ai  t+ + l+ +l ++ + s+ +++ +++s+++ +i ++
     CCE30775.1 325 GIPVLNHIVNAAILTSAWSAGNSFLYSGSRILYSMSLNGQAPKIFRATNRNGVPWLAILATWAIGLLAYLNVSNSGSTVFTWFSNISTISGFIAWI 420
                    *****************************************************************99998887666******************** PP

  AA_permease_2 364 lliigalilrkkrphlkr....pgk.....ilvaiigalfllfllvalf..f 404
                    +++i++l  r+ ++  +     p++     ++ ++  ++++l+++ ++f  f
     CCE30775.1 421 VVLITYLRFRRAMEFNNLldslPYRtplqpYVSYAALVVISLLTITNGFhtF 472
                    *******999999877555567555555543444444555555554444221 PP

>> Pet100  Pet100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.57   3.4e+03      20      34 ..     210     224 ..     209     227 .. 0.77
   2 ?    9.9   0.0   0.00017         1      13      61 ..     483     531 ..     481     539 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.57
      Pet100  20 gvfyyfnqpeyfeef 34 
                   f+y n+p  f ++
  CCE30775.1 210 LGFHYWNDPGAFVDY 224
                 569******888664 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00017
      Pet100  13 lYvffPvgvfyyfnqpeyfee.fvvktkreffppeekelreeleelkeer 61 
                  Y+++P+++ +y ++  +f+    +++  ++   + k+   ele + + r
  CCE30775.1 483 AYITIPIFLVLYLGHKVWFRTaLYIPVD-KIDAVTGKKEMDELEAMEQPR 531
                 6*******************96445532.233344444455555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4013.33
//
Query:       CCE30776.1  [L=137]
Description: uncharacterized protein CPUR_04625 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.28   10.6   7.7       0.35   10.2   7.7    1.1  1  Trs65     TRAPP trafficking subunit Trs65


Domain annotation for each model (and alignments):
>> Trs65  TRAPP trafficking subunit Trs65
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   7.7   1.9e-05      0.35     109     176 ..      31      93 ..      13     100 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 1.9e-05
       Trs65 109 tpsqsssliqrshrpsqlsisggsassslsspsvsrpdalpsleasasrtretsspdlgitltfsgps 176
                  +++++  + r+h  s+ s+  ++++++++s      ++++s ++s+s++++t +p  git tf++p+
  CCE30776.1  31 GKLTKTVTLSRAHPSSSSSMAHNTTTTVITS-----TSTSTSISTSTSNNTTTYMPTGGITSTFTTPD 93 
                 3444556677777666666555543344443.....444455666666677899*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1088  (0.0606838); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1099.63
//
Query:       CCE30777.1  [L=513]
Description: probable AVT6-involved in amino acid efflux from the vacuole [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-93  313.5  16.1    1.8e-93  313.5  16.1    1.3  2  Aa_trans         Transmembrane amino acid transporter protein
  ------ inclusion threshold ------
       0.51   10.2   2.9         16    5.4   0.1    3.0  3  DUF126           Aconitase X swivel domain
        2.8    7.9  16.9      0.068   13.2   2.1    3.8  4  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.5  16.1   3.1e-97   1.8e-93       2     384 ..      39     438 ..      38     441 .. 0.94
   2 ?   -4.3   0.5       0.9   5.4e+03      45      59 ..     490     504 ..     487     507 .. 0.55

  Alignments for each domain:
  == domain 1  score: 313.5 bits;  conditional E-value: 3.1e-97
    Aa_trans   2 tssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvs 100
                 ++s++s+++nl+++ivGaG+La+P  ++++G+++G++l++  +l+  ++l+l++kc+++l+  ++ +s+++l + ++++ +++i+d+ai+v++fGvgvs
  CCE30777.1  39 KASTISSIVNLLNTIVGAGTLAMPSVLSHMGIMLGVLLVMWSGLTAAFGLYLQSKCARYLD--RGTASFFALSQITYSQ-ASVIFDAAIAVKCFGVGVS 134
                 789********************************************************96..9********9999999.8****************** PP

    Aa_trans 101 yliligdllpaifesffdt.....lllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkasklkgl 194
                 y+i+igdl+p ++ +f+++     +l+++  +i +++l +ipLs+++ l++L+y+Sl+alvs+ y+iv++v+  a + +  ++++   + + a    ++
  CCE30777.1 135 YMIIIGDLMPGVMLGFNSNaeqipYLVDRHFWITAFMLLVIPLSFLRRLESLKYTSLVALVSIGYLIVLVVYHFAVDPHAAPENIRVIKWAGA---VDT 230
                 ***************999999*******************************************98888888888888888888888886334...46* PP

    Aa_trans 195 flaigiivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfplqlhp 293
                 ++a++i+vFA+t+h ++++i ne+kd+s  ++m +v+++si  a+ +yilv+ +GY tFGn++ gni+l +p   +  +i+++++v+ +++s+plq+hp
  CCE30777.1 231 LSALPIVVFAYTCHQNMFSIVNEIKDNSP-PAMVRVVSASIGSAASIYILVAITGYITFGNNIVGNIILMYPTG-VASTIGKAAIVILVLFSIPLQVHP 327
                 *****************************.99***************************************855.7*********************** PP

    Aa_trans 294 lrqvvenllikk....................eavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlkli 372
                 +r++++ +l+++                              ap s +++ ++++l+++++y+ Alsv+sl++vl++vG+t+st++sfilP+lf++k+ 
  CCE30777.1 328 CRASLDAVLRWRpsrsqsltgrnepsslnapsPRGGDHAATTAPMSETRFALLTTLILTLAYFTALSVSSLDRVLAFVGSTGSTSISFILPGLFYYKIS 426
                 ****************************766533334455667899999************************************************** PP

    Aa_trans 373 ktekksleklvk 384
                  +e+   ++l+k
  CCE30777.1 427 DPESPHHQRLMK 438
                 999987777765 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 0.9
    Aa_trans  45 llslytlllLvkcsk 59 
                 +ls+y+++++v c+ 
  CCE30777.1 490 ALSVYGMVVMVVCLM 504
                 355666666666654 PP

>> DUF126  Aconitase X swivel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.8     1e+04      35      48 ..      37      51 ..      36      54 .. 0.77
   2 ?    3.9   0.1    0.0076        45      22      48 ..     288     315 ..     279     320 .. 0.77
   3 ?    5.4   0.1    0.0026        16      28      49 ..     399     420 ..     392     426 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.8
                --S--SS-TTH.HHH CS
      DUF126 35 sgkGStvgsyv.lle 48
                +gk St +s+v ll+
  CCE30777.1 37 GGKASTISSIVnLLN 51
                689999999996665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0076
                 TT-B-TTS.EEEES--S--SS-TTHHHH CS
      DUF126  22 egqsiagk.iLvlpsgkGStvgsyvlle 48 
                  g++i g  iL++p+g  St g + ++ 
  CCE30777.1 288 FGNNIVGNiILMYPTGVASTIGKAAIVI 315
                 5677776626999*********988765 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0026
                 TSEEEES--S--SS-TTHHHHH CS
      DUF126  28 gkiLvlpsgkGStvgsyvllel 49 
                 +++L++ ++ GSt+ s +l  l
  CCE30777.1 399 DRVLAFVGSTGSTSISFILPGL 420
                 9***************998655 PP

>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.5      0.11   6.4e+02      91     141 ..      60     111 ..      47     135 .. 0.70
   2 ?   13.2   2.1   1.1e-05     0.068      27     148 ..     197     320 ..     189     335 .. 0.80
   3 ?   -0.3   0.0      0.15   8.7e+02      48      91 ..     371     414 ..     343     420 .. 0.71
   4 ?    1.4   1.3     0.046   2.8e+02      33      68 ..     466     503 ..     459     510 .. 0.47

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.11
  Abhydrolase_9_N  91 eyllvllvallvfalllllgrllralvr.llarllgrvlprrvaavlgvlvv 141
                      +++ vl    +++++ll+++ +l a++  +l+++  r+l r  a ++++  +
       CCE30777.1  60 AMPSVLSHMGIMLGVLLVMWSGLTAAFGlYLQSKCARYLDRGTASFFALSQI 111
                      5555555555666777777777777666256699999999988888876555 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.1e-05
  Abhydrolase_9_N  27 lGvllawlvrrllrlpepsrrvrrrlrlalavvalvvllvalvlaarwQrelralmgaeplgaaeyllvllvallvfall..lllgrllralvr 118
                      +G l+  +v  + + p  +++  r++++a av +l +l +++++ +  Q+  + + ++++ ++ ++++v+ +++  +a +  l+++ +   + +
       CCE30777.1 197 IGYLIVLVVYHFAVDPHAAPENIRVIKWAGAVDTLSALPIVVFAYTCHQNMFSIVNEIKDNSPPAMVRVVSASIGSAASIyiLVAITGYITFGN 290
                      455555555555557788899999******************************************9999877766555400455555566667 PP

  Abhydrolase_9_N 119 llarllgrvlprrvaavlgvlvvvvlvvll 148
                       +   +  ++p  va ++g +++v+lv++ 
       CCE30777.1 291 NIVGNIILMYPTGVASTIGKAAIVILVLFS 320
                      777888888***********9999999875 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.15
  Abhydrolase_9_N  48 vrrrlrlalavvalvvllvalvlaarwQrelralmgaeplgaae 91 
                       ++ +r al+++++++l+++++l++   +++ a++g  + ++ +
       CCE30777.1 371 PMSETRFALLTTLILTLAYFTALSVSSLDRVLAFVGSTGSTSIS 414
                      44566777777777777777777777777777777776666655 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.046
  Abhydrolase_9_N  33 wlvrrllr..lpepsrrvrrrlrlalavvalvvllval 68 
                      w +rr  r  l+++ +   rrl lal v ++vv++v+l
       CCE30777.1 466 WRWRRKWRwdLERLDHGLVRRLALALSVYGMVVMVVCL 503
                      55555552233333344444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3813.91
//
Query:       CCE30778.1  [L=276]
Description: probable RO-10 protein, required for nuclear distribution [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-09   35.7   0.0    9.7e-09   35.3   0.0    1.1  1  Dynactin_p22  Dynactin subunit p22


Domain annotation for each model (and alignments):
>> Dynactin_p22  Dynactin subunit p22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   5.4e-13   9.7e-09       2     150 ..      86     236 ..      85     253 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 5.4e-13
  Dynactin_p22   2 ldaLEeriaeLEkrvlGeekekeked.esiidsLakvqkklssavskrekikellkkleelekyLd.p.eyedseelpdevKleliLaeedeLkkta 95 
                   +++LE+r+ ++E+ + G  ++  + + es i+++++++k+ s ++s    + ellk ++   ++   p + e  ++l+ ++ + ++La+++ +  t 
    CCE30778.1  86 ISLLESRLLRIEHVLHGHAASHPAGQtESAIQRIQNLEKRFSMLISRIRVYGELLKIYKSTPDLFHaPdASEPPSQLSVDAIRSIVLASAPAIPATL 182
                   789****************99998888********************************99999998635555555********************* PP

  Dynactin_p22  96 alleqlqeLkpvldseeikdvpelkekLekLsqihlkqqeeveelseevkkllek 150
                   + l+ +q+ +pv d +e   +  l+e+++ +++++l q  e+ el ++ ++++  
    CCE30778.1 183 SCLTAIQD-SPVPDPAESASLIGLTERMKAIEATQLAQAAEMAELRQRSEAVMLA 236
                   *******9.8**************************************9998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2166.60
//
Query:       CCE30779.1  [L=311]
Description: related to SSU81 protein, involved in the HOG1 high-osmolarity signal transduction pathway [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-10   40.9   0.0    2.2e-10   40.0   0.0    1.5  1  SH3_1     SH3 domain
      6e-06   26.0   0.0    1.2e-05   25.1   0.0    1.5  1  SH3_9     Variant SH3 domain
    1.5e-05   24.5   0.0    3.3e-05   23.5   0.0    1.5  1  SH3_2     Variant SH3 domain
     0.0056   16.3   0.4      0.057   13.0   0.9    2.0  2  SUR7      SUR7/PalI family
  ------ inclusion threshold ------
       0.11   12.2   1.2        0.2   11.3   1.2    1.4  1  DUF2370   Protein of unknown function (DUF2370)


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0     6e-14   2.2e-10       1      48 []     257     305 ..     257     305 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 6e-14
                 EESSSBEXSS..TTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaee..sdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 +A+Y Yea+   ++E+sf+k +++ v++ s   Ww++r++gtg++G+ Ps
  CCE30779.1 257 KAIYSYEANPsdANEISFNKHEILDVSDVSGR-WWQARRRGTGETGIAPS 305
                 7*******998899**************8888.****************8 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   3.4e-09   1.2e-05       1      48 [.     258     308 ..     258     308 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3.4e-09
       SH3_9   1 Alypye..preddeLsLqrGDvitvieesedgWlegsl..tGrtGlvPanyv 48 
                 A+y ye  p ++ e+s+++ +++ v++  ++ W+++++  tG+tG  P+ny+
  CCE30779.1 258 AIYSYEanPSDANEISFNKHEILDVSDV-SGRWWQARRrgTGETGIAPSNYL 308
                 8999*94455555************988.9******9769***********6 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   9.2e-09   3.3e-05       8      54 ..     262     308 ..     256     310 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 9.2e-09
                 B-S..CGCCB--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCGE CS
       SH3_2   8 yvg..edkseLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPsslv 54 
                 y++  +d +e+sf k++++ v       s+ ww++++   G  G++Ps+++
  CCE30779.1 262 YEAnpSDANEISFNKHEILDVS----DVSGRWWQARRrgTGETGIAPSNYL 308
                 5444499999***********7....7889*****99777999******97 PP

>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.9   1.6e-05     0.057     156     209 ..      33      80 ..      12      83 .. 0.69
   2 ?    0.6   0.0       0.1   3.6e+02       7      41 ..     133     170 ..     128     263 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
        SUR7 156 vlsflatllaalldtllfvfvrkkinlkefgikaslglkflafaWlalaaallv 209
                  ++fla     ++ +++ +    +i+++++ i+ ++ ++f +faW a++ +l++
  CCE30779.1  33 SIAFLAWS---ITFIACII---AQIQTNSISIDQNPDKQFPSFAWWAVVYSLFL 80 
                 23333333...33444444...5557899********************99976 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.1
        SUR7   7 flslaalilllfailgsiknstplt...siylskfdls 41 
                 f++l ++i++++  +gs+ +stp +   s+ l k ++ 
  CCE30779.1 133 FILLSMVIIVWIFYFGSTPSSTPRAfldSFALTKGSNV 170
                 44445555555556666645554443325555555544 PP

>> DUF2370  Protein of unknown function (DUF2370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.2   5.5e-05       0.2      61     133 ..      49     123 ..      32     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.5e-05
     DUF2370  61 pslesdevlvdGlpvGnlfsfvwNllvsvsFqlvGFlltYl...LHtthAakqGSraGLGitliqygfslrssaee 133
                 ++++++ + +d  p  ++ sf+w ++v   F ++G ++      +Ht h a +G  aG G+ l++ g +    a++
  CCE30779.1  49 AQIQTNSISIDQNPDKQFPSFAWWAVVYSLFLILGIFVVVAsdsIHTYHVAVTGYLAG-GMVLVTSGVNSLVYAKS 123
                 3455599****************************7765433339************9.99999999877665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2408.40
//
Query:       CCE30780.1  [L=166]
Description: uncharacterized protein CPUR_04629 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-45  154.3   0.4    3.5e-45  153.7   0.4    1.3  1  DASH_Spc19  Spc19
  ------ inclusion threshold ------
       0.21   11.4   0.5        0.3   10.9   0.5    1.2  1  Calici_MSP  Calicivirus minor structural protein


Domain annotation for each model (and alignments):
>> DASH_Spc19  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.7   0.4   3.9e-49   3.5e-45       3     157 .]      11     149 ..       9     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: 153.7 bits;  conditional E-value: 3.9e-49
                 HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH-------TTTHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.. CS
  DASH_Spc19   3 ncvsSLrssvslLqssietLdsgvsdfprlkkvLkttrvFeLipesdleaakaslaeeiePqieellekaekeleklerreetLkaklelqegrlsnae 101
                 +cvsSL+ss+++L+s+++tLd+g+ dfprl kvLkt r++eLip+++l+aa+asl++ei+P i+ ll++a++++e+++rr etLka++elq+grl + +
  CCE30780.1  11 SCVSSLSSSLNFLESAVHTLDHGITDFPRLIKVLKTVRHYELIPQTTLAAAEASLRDEIGPYIALLLSRADAQVERQARRIETLKARAELQQGRLARPD 109
                 8************************************************************************************************42 PP

                 ....HHHHT-XXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  DASH_Spc19 102 sskkeeeeseeskeeeeeeenkeeekskkkltkeelerlkkLkqkKerLkytlerL 157
                 +  k+++ s +                 ++l++e+++r++ ++q+Ke+L+y lerL
  CCE30780.1 110 EAGKASALSVR----------------GRRLAGEDKLRARIVRQRKEALRYGLERL 149
                 22222222222................223677899*******************8 PP

>> Calici_MSP  Calicivirus minor structural protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   3.4e-05       0.3      24      97 ..      75     145 ..      57     157 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.4e-05
  Calici_MSP  24 ivyqerdaaqlekqnelletllkkqealqksqleltrdlsinapaarvlsaldaGldevsarrlagsGerviwg 97 
                 + +  r  aq+e+q +++etl  + e lq++ l    d + +a a  v+  + aG d+++ar + ++ e + +g
  CCE30780.1  75 L-LLSRADAQVERQARRIETLKARAE-LQQGRLA-RPDEAGKASALSVRGRRLAGEDKLRARIVRQRKEALRYG 145
                 3.4567779**********9766665.8999986.5799999*******************9999888765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1234.84
//
Query:       CCE30781.1  [L=154]
Description: uncharacterized protein CPUR_04630 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1213.98
//
Query:       CCE30782.1  [L=92]
Description: uncharacterized protein CPUR_04631 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 749.24
//
Query:       CCE30783.1  [L=482]
Description: related to RPN5-subunit of the regulatory particle of the proteasome [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-23   81.6   0.1    2.6e-22   79.3   0.0    2.3  3  PCI            PCI domain
    2.2e-16   59.7   3.4    8.2e-16   57.8   3.4    2.1  1  RPN5_C         26S proteasome regulatory subunit RPN5 C-termi
  ------ inclusion threshold ------
        1.5    8.7   4.6        6.9    6.5   0.3    2.8  3  Synaptobrevin  Synaptobrevin


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         3   1.8e+04      10      29 ..      26      45 ..      14      58 .. 0.63
   2 !   79.3   0.0   4.3e-26   2.6e-22       5     104 ..     326     437 ..     325     438 .. 0.96
   3 ?   -3.4   0.0       2.3   1.4e+04      83      95 ..     465     477 ..     447     480 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3
                HHHTSHHHHHHHHHHHHHHH CS
         PCI 10 lrsgnlsgfseelkdleeel 29
                l + nl+g+ e l  le++ 
  CCE30783.1 26 LAKTNLQGAIEKLTALEKQT 45
                44555666666555554444 PP

  == domain 2  score: 79.3 bits;  conditional E-value: 4.3e-26
                 HHHHHHHHTSHHHHHHHHHHH............HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSS CS
         PCI   5 dllkalrsgnlsgfseelkdl............eeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeir 91 
                 +ll+ ++  +l++++ + +++              +l  d++ +q +e+L+k+v+e+++r v+k+y++i++ rl++lldl++de+Ek++++l+ ++ ++
  CCE30783.1 326 ELLRLFTVPELMRWPAIAEQFgphlcstdvfdaHPRLSSDEKAHQRWEDLRKRVIEHNVRVVAKYYTRIRMNRLTELLDLTEDETEKYISDLVTSKTVY 424
                 799******************999999999999888999999999****************************************************** PP

                 EEEETTTTEEEEC CS
         PCI  92 akidqesgivvfk 104
                 akid+++++v+f 
  CCE30783.1 425 AKIDRPARVVSFA 437
                 **********996 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.3
                 HHHHTTSSSEEEE CS
         PCI  83 klIrdgeirakid 95 
                  lI ++e+ a+i 
  CCE30783.1 465 HLITKEEMMARIQ 477
                 3566666666665 PP

>> RPN5_C  26S proteasome regulatory subunit RPN5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   3.4   1.4e-19   8.2e-16       1      33 []     443     475 ..     443     475 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.4e-19
      RPN5_C   1 NevLNeWssninkLLelvekttHLInKEeMvhk 33 
                 ++vLNeWs+n+++LL ++e+++HLI+KEeM+++
  CCE30783.1 443 DDVLNEWSHNMKSLLGHLERIDHLITKEEMMAR 475
                 79*****************************86 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.3    0.0012       6.9       6      48 ..      14      56 ..       9      60 .. 0.91
   2 ?   -3.3   0.0       1.4   8.3e+03      35      48 ..      87     100 ..      75     113 .. 0.49
   3 ?    3.1   0.1     0.014        81      12      43 ..     442     473 ..     437     477 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0012
                   HHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHH CS
  Synaptobrevin  6 akikaevdevkdimkeNidkvlergekldeLvdktenLqssaq 48
                   +++ +++ e +++ k N++ ++e+   l+++  ++++L+s+a+
     CCE30783.1 14 KEVDKQLPEAESLAKTNLQGAIEKLTALEKQTRQASDLASTAR 56
                   788999*********************************9986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.4
                    HHCCCCHHHHHHHH CS
  Synaptobrevin  35 eLvdktenLqssaq 48 
                    +L++   ++ ++  
     CCE30783.1  87 QLKQAITKMVQTVV 100
                    33333333333333 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.014
                    HHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHH CS
  Synaptobrevin  12 vdevkdimkeNidkvlergekldeLvdktenL 43 
                     d+v +   +N++++l   e++d+L +k e +
     CCE30783.1 442 ADDVLNEWSHNMKSLLGHLERIDHLITKEEMM 473
                    6888899999***************9997666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1186  (0.0661498); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3628.22
//
Query:       CCE30784.1  [L=266]
Description: related to dihydrofolate reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-56  189.2   0.0    9.4e-56  188.8   0.0    1.0  1  FSH1           Serine hydrolase (FSH1)
  ------ inclusion threshold ------
      0.016   15.0   0.0         23    4.7   0.0    3.2  3  Abhydrolase_2  Phospholipase/Carboxylesterase
       0.11   11.7   0.0       0.77    9.0   0.0    2.2  2  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.8   0.0   1.6e-59   9.4e-56       3     210 ..      15     246 ..      12     248 .. 0.95

  Alignments for each domain:
  == domain 1  score: 188.8 bits;  conditional E-value: 1.6e-59
        FSH1   3 kkkkiLcLhGytqsgeiFraktsalrkllkk......lnvelvyldaplelaekadlpkseseeee.....kseeeeesraWfrkkdekneyegleesl 90 
                 ++ kiL+LhGytqsg +Frakt+al+k l+k      l+ +l+y++ap +l  ++d+p+  ++++      ++  + +++aW+r++d +++y  lee++
  CCE30784.1  15 QNVKILMLHGYTQSGPLFRAKTRALEKVLSKvlsplsLTPQLIYPTAPNRL-LPQDIPGFVPSSDIapsssEEDYQPDTWAWWRRDDASGNYLLLEEGM 112
                 689************************************************.*******98877779988777778999******************** PP

        FSH1  91 davkdyikengpfdGiiGFSqGaalaallaslleellkea................shpslkfailvsGfkleepkyeeyyeedkiqtptLhvlGelDt 173
                 ++++d+i+e   +dGi+GFSqGaa a+l+a+ le+ +                     + ++fa+ +sGf ++ ++ + +y e+ki+tp++h lG+lDt
  CCE30784.1 113 ATIADAIREVDGIDGICGFSQGAAAASLVAAALEPNRVLPegdtaarwvhglreanGGKAVRFAVSYSGFWPPVESLQFLY-EPKIETPMMHYLGSLDT 210
                 **********************************99987799************9999999**************9*99**.***************** PP

        FSH1 174 vvdeerseaLaeafknsskvlkHpggHfvPnkkeyvd 210
                 vv+e  s+aL+e +++   ++ HpggH+vP +ke+v+
  CCE30784.1 211 VVEEGTSQALVERCAD-GVTVVHPGGHYVPVSKEWVM 246
                 ****************.9999*************987 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.015        92       7      33 ..       9      35 ..       3      76 .. 0.69
   2 ?    4.1   0.0    0.0059        35     109     119 ..     128     138 ..      93     150 .. 0.88
   3 ?    4.7   0.0    0.0039        23     132     181 ..     175     223 ..     169     254 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.015
                   E--SS---EEEEEE--TT--SHHHHHH CS
  Abhydrolase_2  7 vspkdkaqavviflHGlGdsghawaea 33
                   +s++ k++  +++lHG+  sg ++   
     CCE30784.1  9 QSKNAKQNVKILMLHGYTQSGPLFRAK 35
                   56777777789999**99999554433 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0059
                    EEEETHHHHHH CS
  Abhydrolase_2 109 igGFSqGaala 119
                    i GFSqGaa a
     CCE30784.1 128 ICGFSQGAAAA 138
                    78*****9865 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0039
                    EEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHH CS
  Abhydrolase_2 132 givafsgalplsqklessatavtkklpilqiHgeeDpvvplalgkaakev 181
                     +v++sg+ p+ ++l+    +   ++p+++  g+ D vv+   ++a+ e 
     CCE30784.1 175 FAVSYSGFWPPVESLQF-LYEPKIETPMMHYLGSLDTVVEEGTSQALVER 223
                    57999******999994.5555579**************99888877765 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.13   7.8e+02     104     136 ..      25      53 ..       9      73 .. 0.63
   2 ?    9.0   0.0   0.00013      0.77     188     218 ..     195     225 ..     173     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.13
  Hydrolase_4 104 lilsaPalkikaklkappllklllkllgkllpk 136
                     s+P+++ k    +++l k+l+k+l++l  +
   CCE30784.1  25 YTQSGPLFRAK----TRALEKVLSKVLSPLSLT 53 
                  44467777766....455666666666665544 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00013
  Hydrolase_4 188 akitlPllllhGeaDkvvdpeasrelyerlg 218
                  +ki++P++ + G+ D+vv+++ s++l+er++
   CCE30784.1 195 PKIETPMMHYLGSLDTVVEEGTSQALVERCA 225
                  6899************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1840.88
//
Query:       CCE30785.1  [L=55]
Description: uncharacterized protein CPUR_04634 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-15   56.7   1.2    1.8e-15   56.3   1.2    1.1  1  ATP-synt_J  ATP synthase j chain


Domain annotation for each model (and alignments):
>> ATP-synt_J  ATP synthase j chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   1.2   9.8e-20   1.8e-15       1      31 [.       8      38 ..       8      40 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 9.8e-20
                -----SSSSSHHHHHHHHHHHHHHHHHHHHS CS
  ATP-synt_J  1 kfptpvlkpmwPFfaaglivlygvnkaqnam 31
                ++p+pvlkpmwPFfaag++v+ygvn +q+a 
  CCE30785.1  8 RWPAPVLKPMWPFFAAGIVVMYGVNTIQDAV 38
                8****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 463.41
//
Query:       CCE30786.1  [L=351]
Description: related to NIPSNAP protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-42  142.4   0.6    3.9e-30  104.1   0.1    2.4  2  NIPSNAP   NIPSNAP
  ------ inclusion threshold ------
       0.13   12.6   0.0       0.61   10.4   0.0    2.2  2  DUF5601   Domain of unknown function (DUF5601)


Domain annotation for each model (and alignments):
>> NIPSNAP  NIPSNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   5.1e-13   4.6e-09       6     100 ..     145     239 ..     139     241 .. 0.78
   2 !  104.1   0.1   4.3e-34   3.9e-30       1     102 []     252     349 ..     252     349 .. 0.99

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 5.1e-13
                 EEE-TT-HHHHHHHHHH...THHHHHHHHH--EEEEEEEEESBSSEEEEEEEES-HHHHHHHHHHHHH-HHHHHHHHHHHTT..EEEEEEEEEEE-TT CS
     NIPSNAP   6 Ytlkpgklaeflerfar...eiiaiqekhggeliGyfaseiGalnqvlhlwaydslaarearraalaadpeweaavekavdldliksmesrilkptsf 100
                 +++kp  + e++e +     +++  +e  ++ l+G + +e+G  ++++h+w y+ ++ + + r+a  ++pe++++ +k ++l  i s + +++  +sf
  CCE30786.1 145 HEVKPDHVDEYVELVGHfypKMANTTE-NKVHLVGSWRTEVGNCDTFVHIWEYQKYEGYHQSRHAISHHPEFADFDNKLKRL--ITSKKISLMQEFSF 239
                 666777777766654431113333333.4899**************************************************..98888888777666 PP

  == domain 2  score: 104.1 bits;  conditional E-value: 4.3e-34
                 EEEEEEEE-TT-HHHHHHHHHHTHHHHHHHHH--EEEEEEEEESBSSEEEEEEEES-HHHHHHHHHHHHH-HHHHHHHHHHHTT..EEEEEEEEEEE-T CS
     NIPSNAP   1 yelrtYtlkpgklaeflerfareiiaiqekhggeliGyfaseiGalnqvlhlwaydslaarearraalaadpeweaavekavdldliksmesrilkpts 99 
                 +elr+Ytl+pg+l e+ ++++r+ +a+ e   +e +G+++++iG+ln+v+hlw++++l++r++rr+++++  +w+++v+k+v+l  i++m+sril+p++
  CCE30786.1 252 FELRSYTLHPGNLLEWETHWRRGLKARRE--VMEGVGAWFVQIGDLNTVHHLWQFANLEERRERREKSWSVEGWSDTVHKTVPL--IQNMKSRILIPMP 346
                 59***************************..*****************************************************..************* PP

                 T-S CS
     NIPSNAP 100 fsp 102
                 +sp
  CCE30786.1 347 WSP 349
                 **8 PP

>> DUF5601  Domain of unknown function (DUF5601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.1   9.4e+03      30      46 ..      24      40 ..      22      50 .. 0.76
   2 ?   10.4   0.0   6.8e-05      0.61      17      40 ..     152     175 ..     137     200 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
     DUF5601 30 nlaerlnktplyktvss 46
                + aer nktp  ++ ++
  CCE30786.1 24 TTAERPNKTPSMGDINP 40
                56899999999988754 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 6.8e-05
     DUF5601  17 ieelSemVqdFyqnlaerlnktpl 40 
                 ++e +e+V +Fy ++a+  +++ +
  CCE30786.1 152 VDEYVELVGHFYPKMANTTENKVH 175
                 89****************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2801.40
//
Query:       CCE30787.1  [L=322]
Description: uncharacterized protein CPUR_04636 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-90  303.3   0.0    1.8e-90  303.1   0.0    1.0  1  Rogdi_lz  Rogdi leucine zipper containing protein


Domain annotation for each model (and alignments):
>> Rogdi_lz  Rogdi leucine zipper containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.1   0.0   9.9e-95   1.8e-90       2     268 .]      26     313 ..      25     313 .. 0.93

  Alignments for each domain:
  == domain 1  score: 303.1 bits;  conditional E-value: 9.9e-95
    Rogdi_lz   2 leWLlkeelketlpqlkegLeeClallapedpgstLvlSssrsesvKGvvtRvGtrivkgdislrlrtlpkltlklnptkpivleqLtdlrtlltqald 100
                 l+W + ee+ +++++lk+g+e+C+allap+dpg tLv+S++r+e+vKG++tRvGtri+kg+++l+lrt+p +++++++++pi++++L++l+t+ltqa+d
  CCE30787.1  26 LQWVV-EETITSCHDLKHGIEDCYALLAPIDPGNTLVMSTQRNETVKGTITRVGTRIIKGTLNLQLRTVPACQISISSSEPIHIPALDTLHTHLTQAID 123
                 89***.9******************************************************************************************** PP

    Rogdi_lz 101 lLdltlktgdelsksaqflssqLrllleslseAkalLkgppepelafpangwttesaa.shfePplppnlsldlyiqeaelvldlrvLepvtakpwsei 198
                 lL ltl+  ++++  a +l+s L+ll+es+se+ alLkg+p+ + ++pa  w+t+s++ +hf+P+lppn+s+++ iq+++lvl+lrvLep++a+     
  CCE30787.1 124 LLGLTLS--SPPT--APSLASALKLLSESISESLALLKGTPQ-D-PNPA--WQTSSCPaHHFSPSLPPNMSVYMAIQDSSLVLWLRVLEPADAPI---- 210
                 ***8887..4443..899***********************9.4.5788..********************************************.... PP

    Rogdi_lz 199 stsfgdkladalgtarrlehdeaeevfk..................kg.................eeVmvrekvrVesaDPsLislsakLgalehllaq 262
                    +g+kl +a+gt rrlehde++  f+                   g                 +eV+vrekvr+esaDPsLisl +kLg l+h+l  
  CCE30787.1 211 --ALGTKLGLAIGTFRRLEHDEMDVLFRyhpegdgrcepkkgsigaAGadgnaaqrsgrkeldpvQEVYVREKVRIESADPSLISLHSKLGQLGHMLDL 307
                 ..9*************************9998888887776666550055566666778889999********************************** PP

    Rogdi_lz 263 arrnLa 268
                 ar+nLa
  CCE30787.1 308 ARHNLA 313
                 ****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2746.60
//
Query:       CCE30788.1  [L=171]
Description: uncharacterized protein CPUR_04637 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-29  100.4   0.1      1e-28  100.0   0.1    1.1  1  Rpp20            Rpp20 subunit of nuclear RNase MRP and P
    6.4e-11   41.9   0.0      1e-10   41.3   0.0    1.4  1  Alba             Alba
     0.0085   14.7   0.1     0.0099   14.4   0.1    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.084   13.2   0.4       0.15   12.4   0.4    1.4  1  TetR_C_20        Tetracyclin repressor-like, C-terminal domai


Domain annotation for each model (and alignments):
>> Rpp20  Rpp20 subunit of nuclear RNase MRP and P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   0.1   2.3e-32     1e-28       4     136 ..      42     166 ..      39     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: 100.0 bits;  conditional E-value: 2.3e-32
       Rpp20   4 ktiyVssktpfmsavkRvqklLeqaekrataslal...eqkkkeekkklealekkeeelkkeeVfvkatGrAiekalsvgrwfqekeeykvrvetgsVe 99 
                  t+y ssktpfmsav+Rv+k L+   +r  a+ +    ++  + ++   +a + + e  +   V+v +tG+Aiek+ls++ wf++++++ v  +t++V+
  CCE30788.1  42 PTLYMSSKTPFMSAVRRVRKQLNRSLRRPPAPKNAslqSRVAALNRSTNTAAGATGETAQPMVVTVMGTGKAIEKTLSLASWFEQQGDCDVALRTKTVK 140
                 589*********************87776555443433333444445555556666777788899********************************** PP

       Rpp20 100 vvDdivedeeekankaaededeeepetrtRwvsmvev 136
                  vDdiv ++            +e  e+r+R+vs++ev
  CCE30788.1 141 TVDDIVLED-----------GTEADESRVRNVSCLEV 166
                 ******987...........67899**********98 PP

>> Alba  Alba
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   2.2e-14     1e-10       3      53 ..      44     128 ..      42     141 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 2.2e-14
                 EEE-STS-HHHHHHHHHHHH..................................THTTESEEEEEEETTHHHHHHHHHHHHHHHT CS
        Alba   3 iyVsskspimsyvkralklL..................................snkkeeeVvlkatGraIskAvsvaeilkrrf 53 
                  y ssk+p+ms+v+r+ k+L                                  +  +  +V++ +tG+aI+k++s+a ++++++
  CCE30788.1  44 LYMSSKTPFMSAVRRVRKQLnrslrrppapknaslqsrvaalnrstntaagatgETAQPMVVTVMGTGKAIEKTLSLASWFEQQG 128
                 5789*************************************************99999*************************98 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   2.2e-06    0.0099      15      93 ..      37     113 ..      25     141 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.2e-06
                      TTBSS--B---SBBBESSHHHHCTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEE CS
  Cys_Met_Meta_PP  15 tgavavpiyltstykfkdvdeafageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGde 93 
                       ++ ++ +y +s   f  ++    +++ +    R   p +  l++r+aaL++++++ a ++G +A+  ++++++ +G+ 
       CCE30788.1  37 SSSKSPTLYMSSKTPFM-SAVRRVRKQLNRSLRRPPAPKNASLQSRVAALNRSTNTAAGATGETAQ-PMVVTVMGTGKA 113
                      55667778888877777.333344555556778999******************************.666677777765 PP

>> TetR_C_20  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   3.3e-05      0.15       7      71 ..      55     120 ..      50     126 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.3e-05
                 HHHHHHHHHHHHHHTSHHHHHHHHHHHHH-.-TTT-GGGHHHHHHHHHHHHHHHT-SS--HHHHHH CS
   TetR_C_20   7 rlaevLrratralqrePaLaeAmvrAlsaa.dasaaaevdrvaavvealllralgeeePteedadl 71 
                 ++ +v ++++r l r Pa  +A +++++aa ++s+ + + + +++ ++++++++g++++ e+  +l
  CCE30788.1  55 AVRRVRKQLNRSLRRPPAPKNASLQSRVAAlNRSTNTAAGATGETAQPMVVTVMGTGKAIEKTLSL 120
                 799999*********************9995678888899999************99977776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1446.65
//
Query:       CCE30789.1  [L=156]
Description: uncharacterized protein CPUR_04638 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-23   83.4   0.0    1.6e-23   83.2   0.0    1.0  1  DUF3237   Protein of unknown function (DUF3237)


Domain annotation for each model (and alignments):
>> DUF3237  Protein of unknown function (DUF3237)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   8.8e-28   1.6e-23       1     149 []       2     155 ..       2     155 .. 0.92

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 8.8e-28
                 --EEEEEEEEEEE--.-EEEEEETEEEEEEEEEEEEEESTT--EEE-ST-EEEEEE-T.TS-EEEEEEEEEEETTS..-EEEEEEEEEEE--GGGHHH. CS
     DUF3237   1 Pslepaftlevklea.pvpigegpgkrnivpitgGtikgprldgevlpgGaDwiridp.ggtarldaryvlktddg..aliyirytGvvtldeevlav. 94 
                 P le+ f++ v l++ p  + ++  + +i++++ G+++g+  +g+vl gG D  +++    +  ++  +vl+t+d+  a++++r++G ++++ ++l+  
  CCE30789.1   2 PALEFDFRIAVALNPePSRVESKI-QKEIATVAAGQWSGSFGNGRVLAGGYDLGQARGfRPIRIVEGAFVLQTSDQpaAILEMRTRGSLSGPCDILDSl 99 
                 89***********97457777766.*********************************77788999*******884459*******************6 PP

                 HHHT-..---GGG-EEEEEEEEEESSGGGG.GGGSS-EEEEEEEESSEEEEEEEEE CS
     DUF3237  95 lgggekkesspteygfrthptfetgdekyk.wLnnavfvGsgrfrvegveykvyev 149
                 lg g++k+ ++++ygfr+  t++t+d++y+  +n  ++v+sg++ +e+ ++++y+v
  CCE30789.1 100 LGPGQSKDIDARQYGFRMFATVKTPDKRYAeIVNCGLWVASGMWSGEELIIDAYRV 155
                 66688899999*******************679*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1170.36
//
Query:       CCE30790.1  [L=379]
Description: uncharacterized protein CPUR_04639 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-20   73.1   0.9    5.5e-20   72.5   0.9    1.3  1  CAP       Cysteine-rich secretory protein family


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.9   3.1e-24   5.5e-20       1     126 []     217     354 ..     217     354 .. 0.85

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 3.1e-24
                 HHHHHHHHHHTT----EE-HHHHHHHHHHHHHHHHH..T---S-GGG--HHHHHHTT-TEEEEEES--CCCHH.HHHHTSHH................. CS
         CAP   1 leahNeyRaaaglppLkwdatLekaAqdhardcaash.sdsssspeggdllkyaenagkeniaaaseaaedav.dsWysepgtynkgketegs...... 91 
                 l+ h  +R+++g++pL+wd+tL++ A + a+ c  +h  +++s ++g++l +  ++ +     ++ +++++a+ d Wy+++ ++  +  + ++      
  CCE30790.1 217 LDHHAILRKNHGVQPLEWDETLAQYAANTAKGCVFQHdMNQGSGNYGQNLASNGISGD--ISGQEVDSIRKAIsDMWYKSEINSFSSFYGMSQppsssf 313
                 678999***************************8888677777777777777777777..5555556666655599*****966666666665****** PP

                 ....HHHHHT-SS--EEEEEEEEBTTS-E......EEEEEE CS
         CAP  92 ..ighftnllwpkstkvGcavatcgngsf....tfivvcny 126
                    gh t+llw++++kvGca ++c++g+       ++vcny
  CCE30790.1 314 haYGHVTQLLWKDTRKVGCATVKCPAGTIfgmnSQYSVCNY 354
                 ***************************999**999****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2856.33
//
Query:       CCE30791.1  [L=609]
Description: uncharacterized protein CPUR_04640 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-10   41.1   0.0    9.7e-10   38.3   0.0    2.1  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    5.3e-09   36.7   0.0    0.00049   20.8   0.0    2.8  2  Methyltransf_25  Methyltransferase domain
    7.8e-06   26.6   0.0    3.6e-05   24.4   0.0    2.2  1  Methyltransf_12  Methyltransferase domain
    1.7e-05   25.4   0.0      0.015   15.9   0.0    2.5  2  Methyltransf_11  Methyltransferase domain
    0.00074   19.2   0.0        1.3    8.6   0.0    3.2  2  ATP-grasp_4      ATP-grasp domain
     0.0016   18.2   0.0      0.056   13.2   0.0    2.4  2  Methyltransf_31  Methyltransferase domain
     0.0056   16.5   0.0      0.013   15.3   0.0    1.6  1  Methyltransf_23  Methyltransferase domain
      0.006   16.1   0.0      0.018   14.6   0.0    1.8  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.032   14.3   0.0       0.19   11.7   0.0    2.3  1  ATP-grasp_3      ATP-grasp domain
      0.069   13.3   0.0       0.15   12.1   0.0    1.6  1  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.33   5.8e+02      36      67 ..     121     155 ..     105     161 .. 0.79
   2 !   38.3   0.0   5.4e-13   9.7e-10      61     176 ..     179     304 ..     173     321 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.33
                      -SSEEEEESSSSTTTTE...EEESSGGGHHHHHHH CS
  Dala_Dala_lig_C  36 gypvfVKpareGSSvGv...skveseeelkeaiee 67 
                       +p+fVKp     S  +   s ++++eel +a+++
       CCE30791.1 121 RFPLFVKPGFGCASQLIderSVCRNQEELDSALRR 155
                      69******998888777333458899999988876 PP

  == domain 2  score: 38.3 bits;  conditional E-value: 5.4e-13
                      HHHHHHHHHTT-SCEEEEE--ESEEEEEEEEETSS.CEEEEEEEEE-SS......SSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHH CS
  Dala_Dala_lig_C  61 lkeaieeafkydekvlvEeaiegreievavlgnek.levsevgeivvkk......gfydyeakysddkaqlevpaklekeveekiqelalkayk 147
                      +++ +e+a +  e+++v e+ieg++  + v++ ++   + +  + ++kk      +f  ++ k+ d + +  ++ + +++ +e++q++a++a++
       CCE30791.1 179 YARSLEAAGRNSEDIVVQEYIEGKDYGCVVVQLGQsCVAVTPLAYRMKKplpqkeQFLTFDGKFDDGTHMELLRKEDDAALYEHLQQAAIEAFA 272
                      5677999***********************9965534445555555555688888*********8777777788889999************** PP

                      HTT--SE...EEEEEEEETTTEEEEEEEESS- CS
  Dala_Dala_lig_C 148 aldlrGl...aRvDfflteegeivlnEvNtlP 176
                      + ++r     + vD+ +t +g++++ EvN+ P
       CCE30791.1 273 VSSCRTNntgCDVDLRVTPDGQVFVIEVNPQP 304
                      ****96433389******************99 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   8.2e-05      0.15       1      19 [.     391     409 ..     391     422 .. 0.86
   2 !   20.8   0.0   2.7e-07   0.00049      20      81 ..     443     501 ..     433     508 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.2e-05
                      EEEET-TTSHHHHHHHCTS CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl 19 
                      +LdlGcGtG + ++la+  
       CCE30791.1 391 ILDLGCGTGAFGRMLAQSQ 409
                      8***************984 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 2.7e-07
                      TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSSSTTTEEEEEEESTGGGSSHHH CS
  Methyltransf_25  20 gkakvtgvDiseemleaareraeeeglnvefvqgdaed.lpfedgsfDlvvssgalhhlsded 81 
                      g+++++g+Dis++ml+++re    +    +++q+ +++ l    + +D vv+s al+h+++e 
       CCE30791.1 443 GNYRLLGCDISSGMLDICRETGLYD----SVHQATMHStLMNLTEPIDHVVCSSALQHIEPEM 501
                      589*****************99555....566666633244556789*****989***99764 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     2e-08   3.6e-05       1      82 [.     392     501 ..     392     511 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2e-08
  Methyltransf_12   1 LeiGcGtGsllrallekl.................................pdieytgvDispsaiedakeklakrennnnnnvelealdlldl 61 
                      L++GcGtG++ r+l+++                                   + +++g+Dis+ ++ d  +++  ++  + + ++ +  +l + 
       CCE30791.1 392 LDLGCGTGAFGRMLAQSQkymrhaaslsitpsssppnnsitngsngtketkGNYRLLGCDISSGML-DICRETGLYDSVHQATMHSTLMNLTE- 483
                      8*************************************************99**************.99999999999999999999888774. PP

  Methyltransf_12  62 dggssfDlvvasnvlhhl.kdi 82 
                            D vv+s++l+h+ +++
       CCE30791.1 484 ----PIDHVVCSSALQHIePEM 501
                      ....9*************6554 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0059        11       1      17 [.     392     410 ..     392     425 .. 0.73
   2 !   15.9   0.0   8.5e-06     0.015      18      75 ..     443     498 ..     432     506 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0059
                      EEET-TTSHHHHHHH..HT CS
  Methyltransf_11   1 LdvGcGtGrlaeala..kr 17 
                      Ld+GcGtG++ + la  ++
       CCE30791.1 392 LDLGCGTGAFGRMLAqsQK 410
                      8***********9995433 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 8.5e-06
                      T.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TSS-TT-EEEEEEES-CCC-C CS
  Methyltransf_11  18 g.arvvgvDlskemlklakekaseeglkvefvvadaek.lpfednsfDlvvssevlhhve 75 
                      g +r++g+D+s  ml++++e +  + +    ++a++++ l    + +D vv+s++l+h+e
       CCE30791.1 443 GnYRLLGCDISSGMLDICRETGLYDSV----HQATMHStLMNLTEPIDHVVCSSALQHIE 498
                      4579***************99999984....78888864444456*************94 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0082        15       3      42 ..     122     164 ..     120     218 .. 0.66
   2 !    8.6   0.0   0.00074       1.3     123     151 ..     275     303 ..     257     307 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0082
  ATP-grasp_4   3 lPvviKPsvgffSlGV...ykinneeewkaavaaieeeleqak 42 
                  +P+ +KP  g +S+ +   ++++n+ee+++a+++++e l++ +
   CCE30791.1 122 FPLFVKPGFGCASQLIderSVCRNQEELDSALRRMHEALHEPR 164
                  7888888888888887443468888888888888887665433 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00074
  ATP-grasp_4 123 llglknfpvHiElrvsedgkiipiEvnpl 151
                   ++ +n  + + lrv+ dg++++iEvnp 
   CCE30791.1 275 SCRTNNTGCDVDLRVTPDGQVFVIEVNPQ 303
                  5667888899******************6 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.1e-05     0.056       6      24 ..     390     409 ..     388     424 .. 0.81
   2 ?    2.0   0.0     0.087   1.6e+02      31      87 ..     447     497 ..     432     505 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.1e-05
  Methyltransf_31   6 rvlDlGCGtGeltfelae.e 24 
                      ++lDlGCGtG+++  la+ +
       CCE30791.1 390 TILDLGCGTGAFGRMLAQsQ 409
                      69***************842 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.087
  Methyltransf_31  31 vvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnal 87 
                      + G Dis  ++  +re      +d  +++q+ +++ l + l+ e++D +++ ++l+++
       CCE30791.1 447 LLGCDISSGMLDICRE---TGLYD--SVHQATMHStLMN-LT-EPIDHVVCSSALQHI 497
                      6677777777777777...34566..8999999995554.55.79**********887 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.4e-06     0.013       8      96 ..     373     498 ..     363     506 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.4e-06
  Methyltransf_23   8 elsdklerllpklraggrvLdiGcGtGillevlre..................................ng.fsvtgvDlspeaveiae..kak 64 
                       +++ l +l++k + +g +Ld+GcGtG + + l++                                  +g + + g D+s+ + +i +  + +
       CCE30791.1 373 TIKQSLGELVEKYDFSGTILDLGCGTGAFGRMLAQsqkymrhaaslsitpsssppnnsitngsngtketKGnYRLLGCDISSGMLDICRetGLY 466
                      56677778888888899************77776655556666667777777777777776665555442236899999999888888888444 PP

  Methyltransf_23  65 kaqkdqfdeqeaaepqgkfdlIvlrevlehvp 96 
                       ++++ +  +   +  + +d +v++  l h++
       CCE30791.1 467 DSVHQATMHSTLMNLTEPIDHVVCSSALQHIE 498
                      44444444444668888999999999999986 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     1e-05     0.018      31      54 ..     387     410 ..     375     420 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1e-05
                 TCSEEEEET-TTSHHHHHHHHHTT CS
         MTS  31 lsgkvlDlGcGaGvlgaalakesp 54 
                 +sg++lDlGcG+G+ g +la+ ++
  CCE30791.1 387 FSGTILDLGCGTGAFGRMLAQSQK 410
                 8999***************99876 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.19      63     157 ..     190     303 ..     116     305 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                  ....EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET...............TEEEEEEES----H..HHHHHHHHHHHHTTST..T--EEE.EEEE CS
  ATP-grasp_3  63 ve..lvqefieGkplSvsllsdgekvlvlavnrqliekaeke...........fvyaGnvtpietel..keevvelaeevvekle..glaGyv.GvDl 142
                   e  +vqe+ieGk++   ++  g+   ++av +    +++                 G  ++   ++  +   ++l + ++e++   +++  + G D+
   CCE30791.1 190 SEdiVVQEYIEGKDYGCVVVQLGQS--CVAVTPLAYRMKKPLpqkeqfltfdgKFDDGTHMELLRKEddAALYEHLQQAAIEAFAvsSCRTNNtGCDV 285
                  2256************999997754..44544444433222245788955554333333333332222222233444455666655555554337665 PP

                  ...EESS.SEEEEEEESS CS
  ATP-grasp_3 143 ...vlkdeepyviEvNPR 157
                     v  d++  viEvNP 
   CCE30791.1 286 dlrVTPDGQVFVIEVNPQ 303
                  33556679999*****96 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.6e-05      0.15       9      54 ..     378     452 ..     376     518 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.6e-05
                 HHHHHHHHT-S-TT-EEEECT-TTSHHHHHHCCT..................................T.-SEEEEEES CS
        FtsJ   9 LleidekfklfkpgktvvDlgaaPGgwsqvllqrl.................................gakgkvvavDl 54 
                 L e+ ek++ f   +t++Dlg+++G++  +l+q                                   g + +++++D+
  CCE30791.1 378 LGELVEKYD-F--SGTILDLGCGTGAFGRMLAQSQkymrhaaslsitpsssppnnsitngsngtketkG-NYRLLGCDI 452
                 568889999.7..579***************99974444444444444444444444444443332211.245555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4069.73
//
Query:       CCE30792.1  [L=225]
Description: probable NADH dehydrogenase (ubiquinone) 22K chain precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-07   31.8  14.6    1.6e-06   28.1   4.0    2.6  3  CHCH      CHCH domain
     0.0043   17.1  12.4       0.14   12.1   1.5    2.2  2  Cmc1      Cytochrome c oxidase biogenesis protein Cmc1 like
     0.0048   16.9   7.5       0.21   11.6   2.3    2.2  2  CX9C      CHCH-CHCH-like Cx9C, IMS import disulfide relay-sys
  ------ inclusion threshold ------
      0.028   14.7   7.8          6    7.2   4.1    2.9  2  Pet191_N  Cytochrome c oxidase assembly protein PET191


Domain annotation for each model (and alignments):
>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.5   7.1e-05      0.32      21      34 ..      98     111 ..      96     112 .. 0.89
   2 ?   -2.4   0.1       1.3   5.7e+03       9      13 ..     119     123 ..     119     124 .. 0.66
   3 !   28.1   4.0   3.5e-10   1.6e-06       1      33 [.     143     175 ..     143     177 .. 0.97

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.1e-05
                 TTHHHHHHHHHHHC CS
        CHCH  21 kCrkefeafkeCvk 34 
                  Cr++++ +++C++
  CCE30792.1  98 RCRDYNDDYMQCKN 111
                 5***********86 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
                 HHHHH CS
        CHCH   9 lkClk 13 
                 ++C+k
  CCE30792.1 119 FDCMK 123
                 67887 PP

  == domain 3  score: 28.1 bits;  conditional E-value: 3.5e-10
                 THHHHHHHHHHHHHCTSSTTTTHHHHHHHHHHH CS
        CHCH   1 CgeefkeylkClkdnsdefskCrkefeafkeCv 33 
                 C+ ef+++++Cl++ ++++++Cr   +++++Cv
  CCE30792.1 143 CLAEFRKHWDCLENRNHQMWQCRPAEWKLNKCV 175
                 9*******************************9 PP

>> Cmc1  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   1.5   3.2e-05      0.14      11      46 ..      97     132 ..      89     139 .. 0.93
   2 !   10.4   3.5   0.00012      0.52      11      53 ..     141     182 ..     133     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.2e-05
        Cmc1  11 keCaelikalaeChkdrllkvvgkCneekeamkkCl 46 
                 ++C+++ +++ +C +++  +  + C +e + +++C 
  CCE30792.1  97 ARCRDYNDDYMQCKNENAGRGEFDCMKEGRRVTRCA 132
                 69*********************************6 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00012
        Cmc1  11 keCaelikalaeChkdrllkvvgkCneekeamkkClkeyrtde 53 
                  +C ++ ++  +C  +r +  +++C+ + ++++kC+ ++ + e
  CCE30792.1 141 THCLAEFRKHWDCLENRNH-QMWQCRPAEWKLNKCVYDKLNLE 182
                 5788888888999995555.57**************9876655 PP

>> CX9C  CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2   0.00056       2.5       5      42 ..      96     134 ..      94     135 .. 0.89
   2 !   11.6   2.3   4.7e-05      0.21       2      40 ..     137     175 ..     136     178 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00056
        CX9C   5 akyCpkefeaYhkCvssn.qswpekCkeqkkeLakCiks 42 
                  + C++    Y +C   n    + +C+++ + ++ C++s
  CCE30792.1  96 GARCRDYNDDYMQCKNENaGRGEFDCMKEGRRVTRCAQS 134
                 5678888899********999***************986 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 4.7e-05
        CX9C   2 EdvakyCpkefeaYhkCvssnqswpekCkeqkkeLakCi 40 
                  d+  +C  ef +  +C+++ + +  +C +   +L+kC+
  CCE30792.1 137 KDIDTHCLAEFRKHWDCLENRNHQMWQCRPAEWKLNKCV 175
                 68999***************9889999***********7 PP

>> Pet191_N  Cytochrome c oxidase assembly protein PET191
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0015       6.9      40      56 ..      96     112 ..      83     115 .. 0.88
   2 ?    7.2   4.1    0.0013         6      19      53 ..     120     153 ..     117     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0015
    Pet191_N  40 peeCkqlrkayfeCkrg 56 
                  ++C+++ ++y++Ck++
  CCE30792.1  96 GARCRDYNDDYMQCKNE 112
                 578************86 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0013
    Pet191_N  19 dCvkkerktpkeClkekaeelpeeCkqlrkayfeC 53 
                 dC+k++ ++++ C ++  ++++++C +  ++  +C
  CCE30792.1 120 DCMKEG-RRVTRCAQSVLKDIDTHCLAEFRKHWDC 153
                 899888.66999**************999999899 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1664.84
//
Query:       CCE30793.1  [L=336]
Description: related to nuclear pore protein NUP57 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-38  132.2   1.5    1.4e-38  132.2   1.5    2.5  3  Nup54            Nucleoporin complex subunit 54
    3.1e-15   55.4   5.9    3.1e-15   55.4   5.9    1.7  2  Nup54_57_C       NUP57/Nup54 C-terminal domain
     0.0005   20.9  15.3    0.00095   20.0  15.3    1.4  1  Nucleoporin_FG   Nucleoporin FG repeat region
  ------ inclusion threshold ------
      0.017   15.4   0.3        1.1    9.6   0.2    2.4  2  V-SNARE_C        Snare region anchored in the vesicle membran
      0.037   14.2   4.6        3.2    8.0   0.0    3.3  3  Cnn_1N           Centrosomin N-terminal motif 1
      0.061   13.2   0.7        2.9    7.9   0.0    2.6  2  IBN_N            Importin-beta N-terminal domain
        0.1   13.0   6.5       0.73   10.2   2.9    2.6  2  CCDC-167         Coiled-coil domain-containing protein 167
        0.2   11.3   1.3        2.9    7.6   0.1    2.7  2  Nbl1_Borealin_N  Nbl1 / Borealin N terminal
       0.42    8.7   4.6        4.8    5.2   0.8    2.1  2  EzrA             Septation ring formation regulator, EzrA
       0.77    9.1   8.0        4.4    6.7   1.9    2.4  2  DUF3552          Domain of unknown function (DUF3552)
        3.5    8.3   8.3        6.3    7.4   0.5    3.2  3  Syntaxin-6_N     Syntaxin 6, N-terminal
        5.5    7.3  12.5        4.9    7.5   0.0    3.2  4  Spc24            Spc24 subunit of Ndc80


Domain annotation for each model (and alignments):
>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3       1.5   2.3e+03      66      85 ..      53      72 ..      24      77 .. 0.63
   2 !  132.2   1.5   9.1e-42   1.4e-38       3     140 .]     129     264 ..     127     264 .. 0.98
   3 ?   -0.4   0.2      0.77   1.1e+03      43      64 ..     299     320 ..     285     334 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.5
                HHHHHHHHHHHHHHHHHHHH CS
       Nup54 66 hqletsvrlekakkrhvels 85
                 q+++++++  + + +++ls
  CCE30793.1 53 GQQQNAQQMPALSQSQAQLS 72
                35566666666666666666 PP

  == domain 2  score: 132.2 bits;  conditional E-value: 9.1e-42
                 TT--HHHHHHHHHT-SST.TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT- CS
       Nup54   3 agvdeekWeeAleenPdpeklvPvpvkGFedLakRvkaQqkevaqhrerlkeisdrleeleqkhqletsvrlekakkrhvelshRllrllrkleilrsr 101
                 +++d ++WeeAl+++P++ +++Pv++ GF  +a+R+k+Q+++++ ++ rl++i+ +l+++ q+h+let vr   a++r++++s+R+l l++k++ilr+r
  CCE30793.1 129 PHEDANEWEEALQKKPAS-GYMPVLCSGFTGVADRLKTQKRAINDFNTRLHQINGSLDAILQRHELETEVRALAARRRQTAISERCLVLAAKVQILRNR 226
                 789*************99.9******************************************************************************* PP

                 SS---SSHHHHHHHHHHHHHHHS-HHH.HHHHHHHHHHH CS
       Nup54 102 gyaldaeEeelrarletleaqlndpaqlkgrvnelwarl 140
                 gyal+a+E+ l++rl+ le+q+ndpa+  +r +e+w+rl
  CCE30793.1 227 GYALSADEDDLKNRLQVLERQVNDPAV-GAREEEMWSRL 264
                 ************************999.9*******985 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.77
                 HHHHHHHHHHHHHHHHHHHHHH CS
       Nup54  43 kevaqhrerlkeisdrleeleq 64 
                 k ++ ++++l+ +++++e l+q
  CCE30793.1 299 KVLEDYEKQLQHLRKEVEILAQ 320
                 4444445555555555544444 PP

>> Nup54_57_C  NUP57/Nup54 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       5.7   8.5e+03      18      24 ..     274     280 ..     274     280 .. 0.80
   2 !   55.4   5.9   2.1e-18   3.1e-15       1      29 []     294     322 ..     294     322 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.7
  Nup54_57_C  18 LkKElEs 24 
                 L KEl++
  CCE30793.1 274 LSKELDQ 280
                 679*996 PP

  == domain 2  score: 55.4 bits;  conditional E-value: 2.1e-18
  Nup54_57_C   1 eaKaKKILeDYekQLqHLkKElEsikkDy 29 
                 eaKaKK+LeDYekQLqHL+KE+E + +D+
  CCE30793.1 294 EAKAKKVLEDYEKQLQHLRKEVEILAQDF 322
                 79**************************9 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0  15.3   6.4e-07   0.00095       2      59 ..       3      65 ..       2      79 .. 0.49

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.4e-07
  Nucleoporin_FG  2 lFGaaatstsgglFGststt....atstgglFG..asstatatasggglfgatsqtaasgglFG 59
                    +FG+++++ sgglFG+++ +    +t+++++FG   +++++++++g+++ g+ +q+a++ ++  
      CCE30793.1  3 MFGQTKPAGSGGLFGQPQPAqqsqPTAASSIFGqaMANQQNNNTTGNNALGQ-QQNAQQMPALS 65
                    5665556666666666666555555555666665322333333333355555.33333333333 PP

>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   0.00071       1.1      29      55 ..     161     187 ..     157     189 .. 0.89
   2 ?    3.2   0.0     0.072   1.1e+02      19      39 ..     292     312 ..     288     317 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00071
   V-SNARE_C  29 edLhsQretLkrarsklhnvanrlgks 55 
                 + L+ Q+  +++ +++lh+++ +l+ +
  CCE30793.1 161 DRLKTQKRAINDFNTRLHQINGSLDAI 187
                 6799********************987 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.072
   V-SNARE_C  19 etisiGaailedLhsQretLk 39 
                 et++ +  +led+ +Q + L+
  CCE30793.1 292 ETEAKAKKVLEDYEKQLQHLR 312
                 89**************88885 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       0.9   1.3e+03      38      54 ..     183     199 ..     135     212 .. 0.64
   2 ?    8.0   0.0    0.0022       3.2      17      61 ..     235     280 ..     228     281 .. 0.88
   3 ?    5.7   0.6     0.011        16      32      71 ..     288     327 ..     283     329 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.9
      Cnn_1N  38 keellkenielkveves 54 
                 + +++ ++ el++ev  
  CCE30793.1 183 SLDAILQRHELETEVRA 199
                 33444445555555544 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0022
      Cnn_1N  17 FdLKLriyfLeerleklse.eqkeellkenielkveveslqkelke 61 
                  dLK r++ Le +++  +     ee+ + +i l+v    l kel++
  CCE30793.1 235 DDLKNRLQVLERQVNDPAVgAREEEMWSRLISLRVYSDRLSKELDQ 280
                 59***********999888789999******************985 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.011
      Cnn_1N  32 klseeqkeellkenielkveveslqkelkekkkllreaek 71 
                  l++e+  ++ k + + + ++++l+ke++ + +  ++ ek
  CCE30793.1 288 GLDPETEAKAKKVLEDYEKQLQHLRKEVEILAQDFQQWEK 327
                 5677888888888888888888888888888877777666 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0019       2.9       3      36 ..     168     202 ..     167     203 .. 0.94
   2 ?    2.9   0.2     0.067     1e+02       1      26 [.     297     322 ..     297     331 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0019
                 HHHHHHHC.STCHHHHHHHHHHCTTSHHHHHHHHH CS
       IBN_N   3 kqLkqlek.qpgflsallqilanseselevRqlAa 36 
                 ++++++++ +++ + +l  il++ e+e evR lAa
  CCE30793.1 168 RAINDFNTrLHQINGSLDAILQRHELETEVRALAA 202
                 579999999**********************9997 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.067
                 HHHHHHHHHCSTCHHHHHHHHHHCTT CS
       IBN_N   1 AekqLkqlekqpgflsallqilanse 26 
                 A k L++ ekq ++l + ++ila++ 
  CCE30793.1 297 AKKVLEDYEKQLQHLRKEVEILAQDF 322
                 7899******************9964 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.063        94      11      49 ..     161     202 ..     155     212 .. 0.69
   2 ?   10.2   2.9   0.00049      0.73      36      64 ..     278     314 ..     229     316 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.063
    CCDC-167  11 eklascrerLeaverrlrkeelseee...ResleeEeaslke 49 
                 ++l+  ++ +++ ++rl++ + s ++   R++le+E ++l  
  CCE30793.1 161 DRLKTQKRAINDFNTRLHQINGSLDAilqRHELETEVRALAA 202
                 555666666666666666666666655558888888888765 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00049
    CCDC-167  36 e.......Resle.eEeaslkeqleenekeLksLrke 64 
                          e+l  e ea+ k+ le++ek+L++Lrke
  CCE30793.1 278 LdqpggqdGEGLDpETEAKAKKVLEDYEKQLQHLRKE 314
                 1444444456666445677899**************9 PP

>> Nbl1_Borealin_N  Nbl1 / Borealin N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.13   1.9e+02       2      17 ..     184     199 ..     173     225 .. 0.70
   2 ?    7.6   0.1     0.002       2.9       9      37 ..     289     317 ..     287     320 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.13
  Nbl1_Borealin_N   2 kealLenfdlEveeRi 17 
                      ++a+L++ +lE e R+
       CCE30793.1 184 LDAILQRHELETEVRA 199
                      5788888888855443 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.002
  Nbl1_Borealin_N   9 fdlEveeRirrlraelelllktlrnrfel 37 
                      +d E e ++++  +++e++l+ lr++ e+
       CCE30793.1 289 LDPETEAKAKKVLEDYEKQLQHLRKEVEI 317
                      7889*********************9987 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2    0.0039       5.8     345     424 ..     169     249 ..     163     256 .. 0.88
   2 ?    5.2   0.8    0.0032       4.8      98     135 ..     296     333 ..     289     335 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0039
                 THHHHHHHHHHHHHHHHHHHHHHS-SS---S.TTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 345 klrelekelkelekdyeeleekleekkvaYS.elqeeleeleekleeieekqeeileslkslrkdEkrAreqldeikkelk 424
                  +++++++l++++ +++ + +++e ++ +     + ++  ++e++  +  k++ +++   +l  dE + +++l+ ++++++
  CCE30793.1 169 AINDFNTRLHQINGSLDAILQRHELETEVRAlAARRRQTAISERCLVLAAKVQILRNRGYALSADEDDLKNRLQVLERQVN 249
                 6789******************9977666651667889999*********************************9999876 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0032
                 HTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTH CS
        EzrA  98 kakkklaeleeeldeveekikkileelkelteseeknr 135
                 kakk l++ e++l++++++++ + +++++  +s + n+
  CCE30793.1 296 KAKKVLEDYEKQLQHLRKEVEILAQDFQQWEKSRQGNS 333
                 89999999999999999999999999999988888776 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.9     0.003       4.4      65     125 ..     189     247 ..     162     262 .. 0.80
   2 ?    5.6   0.4    0.0064       9.6      31      65 ..     292     328 ..     289     333 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.003
     DUF3552  65 lreelekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleek 125
                 +r+ele+e   r    +r ++ + ++   L  k + l+++  +l++ e++lk++ q le++
  CCE30793.1 189 QRHELETE--VRALAARRRQTAISERCLVLAAKVQILRNRGYALSADEDDLKNRLQVLERQ 247
                 45555555..566778899999999999999999999999999999999999999988876 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0064
     DUF3552  31 eAeeeAkkiieeAkkeAeakkkealleake..eihkl 65 
                 e+e++Akk++e+ +k+ ++++ke  + a++  ++ k 
  CCE30793.1 292 ETEAKAKKVLEDYEKQLQHLRKEVEILAQDfqQWEKS 328
                 57899******************99999973344454 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       8.4   1.3e+04      30      46 ..      55      71 ..      31      76 .. 0.52
   2 ?    4.5   0.3     0.035        53      36      90 ..     190     246 ..     131     253 .. 0.56
   3 ?    7.4   0.5    0.0042       6.3      10      73 ..     260     324 ..     254     335 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 8.4
  Syntaxin-6_N 30 dtssstseeldetrteL 46
                  ++++++ + l++ + +L
    CCE30793.1 55 QQNAQQMPALSQSQAQL 71
                  22222344444444444 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.035
  Syntaxin-6_N  36 seeldetrteLrkalr..siewdledLeetvriveknpskfkidekelsrrrafvee 90 
                   ++el+   + L +  r   i++    L   v+i+++  +  + de++l++r +++e+
    CCE30793.1 190 RHELETEVRALAARRRqtAISERCLVLAAKVQILRNRGYALSADEDDLKNRLQVLER 246
                   333333333333222211344444445555566666667788888888888777664 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0042
  Syntaxin-6_N  10 Vqkslnkaeslyrrwerlledtssstseeld.etrteLrkalrsiewdledLeetvriveknpsk 73 
                     + l +++   +r ++ l+++  +  e ld et+ + +k l++ e++l+ L++ v+i+ ++ ++
    CCE30793.1 260 MWSRLISLRVYSDRLSKELDQPGGQDGEGLDpETEAKAKKVLEDYEKQLQHLRKEVEILAQDFQQ 324
                   555566666666666533333333334444327888999*******************9987655 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.4       4.9   7.3e+03      35      43 ..      50      58 ..      36      77 .. 0.43
   2 ?   -0.9   0.0       1.3     2e+03      15      37 ..     176     187 ..     159     216 .. 0.43
   3 ?    7.5   0.0    0.0033       4.9       9      61 ..     216     271 ..     208     273 .. 0.80
   4 ?    6.9   1.0    0.0047       7.1       8      43 ..     296     331 ..     291     336 .] 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.9
       Spc24 35 eeleeesee 43
                + l +++++
  CCE30793.1 50 NALGQQQNA 58
                333333333 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
       Spc24  15 dleselesleselaelkeeleel 37 
                  l++   sl             +
  CCE30793.1 176 RLHQINGSLD----A-------I 187
                 2222222222....2.......1 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0033
       Spc24   9 iakelsdleselesleselaelkeeleeleeesee.....keservedetllklklYr 61 
                 +a +++ l +   +l++  ++lk++l+ le++ ++     +e+e+   + l+ l++Y+
  CCE30793.1 216 LAAKVQILRNRGYALSADEDDLKNRLQVLERQVNDpavgaREEEM--WSRLISLRVYS 271
                 78889999999999******************9997765444433..77778888885 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0047
       Spc24   8 riakelsdleselesleselaelkeeleeleeesee 43 
                 ++ k l+d e++l++l++e + l + +++ e++++ 
  CCE30793.1 296 KAKKVLEDYEKQLQHLRKEVEILAQDFQQWEKSRQG 331
                 678899************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1758  (0.0980534); expected 358.6 (0.02)
Passed bias filter:                      841  (0.0469072); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 2328.75
//
Query:       CCE30794.1  [L=50]
Description: uncharacterized protein CPUR_04643 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-21   73.9   3.0      8e-21   73.8   3.0    1.0  1  Tom5      Mitochondrial import receptor subunit or translocas


Domain annotation for each model (and alignments):
>> Tom5  Mitochondrial import receptor subunit or translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   3.0   4.5e-25     8e-21       1      47 []       1      48 [.       1      48 [. 0.98

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 4.5e-25
        Tom5  1 MFgg.gPpqpSeeEikaaeaeArqtvknfaaaaalLylsPfvidfvkk 47
                MFgg +Ppq S+eEi+a+eaeA +tv++++aaa +LylsPf+id++++
  CCE30794.1  1 MFGGfAPPQQSPEEIRAMEAEAVFTVQQVVAAAFMLYLSPFAIDMASR 48
                *********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 380.10
//
Query:       CCE30795.1  [L=1063]
Description: probable glycine decarboxylase P subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.4e-160  532.7   0.0   1.4e-148  495.3   0.1    2.6  3  GDC-P            Glycine cleavage system P-protein
  ------ inclusion threshold ------
      0.013   14.8   0.0      0.033   13.5   0.0    1.6  1  Beta_elim_lyase  Beta-eliminating lyase
      0.051   13.6   0.1       0.11   12.5   0.1    1.6  1  T2SSM            Type II secretion system (T2SS), protein M


Domain annotation for each model (and alignments):
>> GDC-P  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  495.3   0.1  2.4e-152  1.4e-148       2     365 ..      84     461 ..      83     526 .. 0.90
   2 !   34.5   0.0   1.7e-12     1e-08      24     285 ..     563     842 ..     547     844 .. 0.75
   3 ?   -3.0   0.0       0.4   2.4e+03     332     364 ..     864     896 ..     860     904 .. 0.85

  Alignments for each domain:
  == domain 1  score: 495.3 bits;  conditional E-value: 2.4e-152
                 HH-SS-HHHHHHHHHHH..T-SSHHHHHHHHS-GGGB--...S---------HHHHHHHHHHHHTTB---EE--BTTB------HHHHHHTTT-HHHHS CS
       GDC-P   2 rhigpsekdqkemLetl..GlkslddliekavPkeiklk...kelkleapksEeellaelekiasknkvvksfiGaGyydtilPaviqrnilenpewyt 95 
                 rhigp+++d   mL+++  G+++ld+++ + +P++i l+   k ++l++ +sE+ +++++++i  kn +++ + G Gyy  ++P+vi+rn++enp+wyt
  CCE30795.1  84 RHIGPRDEDIAAMLKQMnsGVDTLDAFVAQVIPEDIMLPpqeKIQSLPKQYSETGITKTFKSIHGKNIIYTWMNGGGYYPAQTPPVIKRNVFENPAWYT 182
                 9**************98889****************97611145566778************************************************* PP

                 --S-SSGGG-HHHHHHHHHHHHHHHHHHT-SEE-S-BS-HHHHHHHHHHHHHH.....H-SSS--EEEEETTS-HHHHHHHHHHHGGGT-EEEEE-GGG CS
       GDC-P  96 aYtPYqaEisqGrLeallnfqtlvadltGldianasllDegtAaaEAvllaar.....askkkakkvvvdkkvhpqtlevlktrakglgieivevdlte 189
                 +YtPYqaE+sqGrL++lln+qt+v+dltGl++anasllDegtAaaEA++++ +      +k+  k++vv++ vh +t++v++ ra+g+gi + + d+++
  CCE30795.1 183 SYTPYQAEVSQGRLQSLLNYQTMVCDLTGLPVANASLLDEGTAAAEAMTMSLNslpasRAKRPGKTYVVSHLVHDDTIQVMRGRAEGFGIRLQVLDVST 281
                 *************************************************986522211567789***************************99999887 PP

                 --S-.......S-EEEEEEEES-TTSB----HHHHHHHHHTT-EEEEEE-TTGGGTB--HHHHT-SEEEEE-TTTT---GGG----EEEEE-GGGGGG- CS
       GDC-P 190 ekvtd....kekevagvlvqypnteGriedlkelvekakkkkslvvvaadllaLtllkpPgelgaDivvGsaqrfGvPlgyGGPhagffAvkeklkRki 284
                 +++ +      +++ g+lvqyp+t+G + d+++l++ a+k+ +l++va+dl aLtll+pPge+gaD+++G++qrfGvPlg+GGPha+f+Avke+ kR++
  CCE30795.1 282 SDAIQkiqnLGDDLIGILVQYPDTNGGVGDYRSLADIAHKQGTLFSVATDLSALTLLTPPGEWGADVAFGNSQRFGVPLGFGGPHAAFMAVKESSKRRL 380
                 77666454467899************************************************************************************* PP

                 -S-EEEEEEBTTS-EEEEEE-CCGSHHCCHHHCS-S--S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
       GDC-P 285 PGRlvGvskDaegkralrlalqtREqHirRdkAtsniCtaqaLlAnlaalyavyhGkeglkeiarrihkkteilakelkkk 365
                 PGR+vGvskD++g ralrlalqtREqHirR+kAtsn+CtaqaLlAn+aa+yavyhG+  lke+a+ +++ + ++++++++ 
  CCE30795.1 381 PGRIVGVSKDRTGGRALRLALQTREQHIRREKATSNLCTAQALLANMAAMYAVYHGPAQLKEMAVTNLRYSRMVQSAAQHY 461
                 **********************************************************************99999988764 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 1.7e-12
                 HHHHHHHS-GGGB--S-------.....--HHHHHHHHHHHHTTB--.-EE--BTTB------HHHHHHTTT-HHHHS--S-SSGGG-HHHHHHHHHH. CS
       GDC-P  24 ddliekavPkeiklkkelkleap.....ksEeellaelekiasknkv.vksfiGaGyydtilPaviqrnilenpewytaYtPYqaEisqGrLeallnf. 115
                 ++++ +++P+ ++ +    l++p     +sE+e+l+ ++++ sk+   v+s+i  G   ++l a+ q +++   +  ++  P  +E s+   ++l+   
  CCE30795.1 563 KQIV-DEIPDIVRRES-SYLTHPvfnsyHSETEMLRYIHHLQSKDLSlVHSMIPLGSCTMKLNATSQMELVGYHK-SSNIHPHAPESSKVGWNTLFTIt 658
                 4444.88999996654.455555577779****************988***************999987765444.57788999999999999999872 PP

                 HHHHHHHHT-SEE-S-BS-HHHHHHHHHHHHH.H..H-SS...S--EEEE...ETTS-HHHHHHHHHHHGGGT-EEEEE-GGG--S-.......S-EEE CS
       GDC-P 116 qtlvadltGldianasllDegtAaaEAvllaa.r..askk...kakkvvv...dkkvhpqtlevlktrakglgieivevdlteekvtd....kekevag 201
                    +a ltG+d  ++sl  ++ A +E + l a r  ++++   k++  ++   ++  +p ++++   r  +++ ++ + +l   + +      e e+ +
  CCE30795.1 659 RRQLAALTGMD--DTSLQPNSGAQGEFAGLRAiRkyHEQQpgpKRDICLIpvsAHGTNPASAAMAGMRVVPVKCDLATGNLDLADLEAkckqYEAELGA 755
                 457899***99..789*********98777431211222211123444542223445677777777888888888877765433333323337788999 PP

                 EEEEES-TTSB---.-HHHHHHHHHTT-EEEEE.E-TTGGGTB--HHHHT-SEE.EEE-TTTT---GGG----EEEEE-GGGGGG-- CS
       GDC-P 202 vlvqypnteGried.lkelvekakkkkslvvva.adllaLtllkpPgelgaDiv.vGsaqrfGvPlgyGGPhagffAvkeklkRkiP 285
                  +v yp+t G  e+ +++  + ++ +   v +  a++ a   l++Pg lgaD+  +   + f +P g GGP +g + vk++lk  +P
  CCE30795.1 756 FMVTYPSTYGVFEPdVRKACDLVHAHGGQVYMDgANMNAQIGLTSPGALGADVChLNLHKTFCIPHGGGGPGVGPICVKSHLKPFLP 842
                 ***********99669**********9999986155556666***********84667889*****************999876665 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       GDC-P 332 aalyavyhGkeglkeiarrihkkteilakelkk 364
                 +  y+   G egl++ +   + ++++l + +k 
  CCE30795.1 864 SWAYMATMGDEGLRKATSVALLNANYLLARIKD 896
                 6679999********999999999999988876 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.5e-06     0.033      88     170 ..     715     791 ..     656     824 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.5e-06
                      THHHHCC--EEEEE-EBTT.TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETT CS
  Beta_elim_lyase  88 gaiaelagvklrdlknkea.GkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgAR 170
                       a a++ag++++++k + a G++dl++lea+ k+   +e++ ++ ++t    +  G  v    +r++ ++++++g ++ +DgA 
       CCE30795.1 715 PASAAMAGMRVVPVKCDLAtGNLDLADLEAKCKQ---YEAELGAFMVTYPSTY--G--VFEPDVRKACDLVHAHGGQVYMDGAN 791
                      44556666666666666555**************...899***9999999998..4..455679******************94 PP

>> T2SSM  Type II secretion system (T2SS), protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.9e-05      0.11      42     118 ..     409     490 ..     406     495 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHCT-..-EEEEEEETT....EEEEEE--B-H CS
       T2SSM  42 rieraqaelqklraqlawveeqaaevralraapasalsgaaleqvvtrsarqagL..alarlqpqgd...gsvqvwleevpf 118
                 r+e+a ++l +++a+la + +  a +++  + ++ a ++   +++v+++a+ +gL  + a l+pqg+   ++v++++++++ 
  CCE30795.1 409 RREKATSNLCTAQALLANMAAMYAVYHGPAQLKEMAVTNLRYSRMVQSAAQHYGLpvTTATLDPQGRvlsDTVTITFDSAET 490
                 7899***********************9999999999******************888888999996444678888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1063 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 6963.87
//
Query:       CCE30796.1  [L=525]
Description: uncharacterized protein CPUR_04645 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-17   63.3   6.4    0.00056   20.7   0.0    7.0  7  WD40         WD domain, G-beta repeat
    5.9e-07   29.7   0.1        2.1    8.7   0.0    4.9  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.67   10.6   5.2       0.73   10.5   3.3    2.2  2  Caskin1-CID  Caskin1 CASK-interaction domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   9.4e-08   0.00056       4      38 .]     138     174 ..     135     174 .. 0.92
   2 ?   -1.1   0.0       0.7   4.2e+03      18      37 ..     204     224 ..     187     225 .. 0.62
   3 !    9.4   0.0   0.00034       2.1      18      38 .]     253     273 ..     235     273 .. 0.84
   4 ?    4.1   0.0     0.016        95      13      36 ..     307     330 ..     292     332 .. 0.85
   5 !   12.4   0.0   3.8e-05      0.23       2      38 .]     377     419 ..     376     419 .. 0.83
   6 !   10.0   0.2   0.00021       1.3       9      38 .]     436     464 ..     427     464 .. 0.68
   7 ?    2.9   0.0     0.039   2.3e+02       4      35 ..     484     521 ..     481     524 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 9.4e-08
                 EEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 
                 l +l+GH +s++ l+ + p g +l+sG+ Dg  ++W+
  CCE30796.1 138 LFSLEGHtDSINTLCwTYPRGEYLISGGLDGRMKVWK 174
                 7899***888**************************6 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.7
                 EETTSSE.EEEEETTSEEEEE CS
        WD40  18 fspdgaw.lasGsdDgtvriW 37 
                  spd++  +a G  Dg+v ++
  CCE30796.1 204 PSPDHPNtVALGATDGSVWVY 224
                 344444443227669999775 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00034
                 EETTSSEEEEEETTSEEEEEE CS
        WD40  18 fspdgawlasGsdDgtvriWd 38 
                 + pdg +la+ s+Dg+++ Wd
  CCE30796.1 253 WTPDGLLLATVSEDGSLYAWD 273
                 99******************9 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.016
                 EEEEEEETTSSEEEEEETTSEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvri 36 
                  +s+ ++p g+++a G+  g v+i
  CCE30796.1 307 LYSIVTDPKGTFVAVGGAGGAVKI 330
                 578889**********99999998 PP

  == domain 5  score: 12.4 bits;  conditional E-value: 3.8e-05
                 EEEEEEESS.SSEEEEE.....EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtsla.....fspdgawlasGsdDgtvriWd 38 
                 q l +l ++ +sv  la     +sp   +la+Gs Dg++ i+d
  CCE30796.1 377 QILASLHTQaDSVETLAttlssTSPPTVLLAAGSVDGSIVIYD 419
                 56677777767788888888899999999************98 PP

  == domain 6  score: 10.0 bits;  conditional E-value: 0.00021
                 SSSSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   9 GHssvtslafspdgawla.sGsdDgtvriWd 38 
                 GH sv  l f ++ +wl+ s+++Dg vr Wd
  CCE30796.1 436 GH-SVVELEFLKN-SWLLtSCGMDGVVRRWD 464
                 66.5666655544.676537799*******8 PP

  == domain 7  score: 2.9 bits;  conditional E-value: 0.039
                 EEEEESS.SS.....EEEEEEETTSSEEEEEETTSEEE CS
        WD40   4 lrtltGH.ss.....vtslafspdgawlasGsdDgtvr 35 
                 +++++GH ++     v ++   + g  +++++dDg   
  CCE30796.1 484 VKEWKGHrGDgerggVLGFVQGQTGERIVTAGDDGVAL 521
                 67889998666899965555555999999999999765 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00035       2.1      31      89 ..     140     199 ..     133     202 .. 0.85
   2 !    7.6   0.0   0.00077       4.6      10      68 ..     212     275 ..     203     297 .. 0.75
   3 ?    1.9   0.0     0.045   2.7e+02      47      67 ..     313     333 ..     295     349 .. 0.88
   4 ?    1.4   0.0     0.066   3.9e+02      51      69 ..     404     422 ..     376     433 .. 0.84
   5 !    4.6   0.0    0.0068        41       9      71 ..     405     469 ..     398     481 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00035
  ANAPC4_WD40  31 tleedkedsevrsLaWk.pdgklLavaysdgevrll..daesgkvvhslsvksekavtclgW 89 
                  +l  +++  +++ L+W  p g+ L  +  dg++++   d++ g+ ++ ++ ++ ++v+ ++W
   CCE30796.1 140 SL--EGHTDSINTLCWTyPRGEYLISGGLDGRMKVWkaDVQPGQPLSISPLGEAQEVKEINW 199
                  45..678889******7689***********98885227899************9******9 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00077
  ANAPC4_WD40  10 iAlatedgellvfRlng.......qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  +Al+ +dg+++v+ ++        q + +     + ++ ++  W pdg lLa + +dg++   d+ 
   CCE30796.1 212 VALGATDGSVWVYTIDSsdpsnplQIIQSY--FLHTESCTAGTWTPDGLLLATVSEDGSLYAWDVW 275
                  688888888888888777777665544444..56778888889***************99887775 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.045
  ANAPC4_WD40  47 kpdgklLavaysdgevrllda 67 
                   p+g++ av+ + g+v++++ 
   CCE30796.1 313 DPKGTFVAVGGAGGAVKIVSL 333
                  689***************985 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.066
  ANAPC4_WD40  51 klLavaysdgevrlldaes 69 
                   lLa +  dg++ ++da  
   CCE30796.1 404 VLLAAGSVDGSIVIYDATR 422
                  58999***********976 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.0068
  ANAPC4_WD40   9 LiAlatedgellvf....RlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  L+A ++ dg+++++    R+  +r    + ++e+++v +L++ ++  lL     dg vr  d  sg 
   CCE30796.1 405 LLAAGSVDGSIVIYdatrRFAVRRHI--SGAHEGHSVVELEFLKNSWLLTSCGMDGVVRRWDLRSGG 469
                  66666666666664111133333333..336778888888888888888888888888877777765 PP

>> Caskin1-CID  Caskin1 CASK-interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.3   0.00012      0.73      28      56 .]     372     398 ..     348     398 .. 0.63
   2 ?   -3.1   0.0       2.1   1.2e+04      33      49 ..     505     521 ..     501     522 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
  Caskin1-CID  28 Rssgsgqssg....haLHagaeGvkllaTvlsq 56 
                   +s      g     +LH++a+ v  laT ls+
   CCE30796.1 372 ATS------GgqilASLHTQADSVETLATTLSS 398
                  222......2233478***************96 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.1
  Caskin1-CID  33 gqssghaLHagaeGvkl 49 
                  gq+   ++ ag +Gv l
   CCE30796.1 505 GQTGERIVTAGDDGVAL 521
                  56555888899999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3610.50
//
Query:       CCE30797.1  [L=614]
Description: uncharacterized protein CPUR_04646 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-10   39.8  11.4    7.4e-10   38.6  11.4    1.7  1  PHD           PHD-finger
     0.0087   16.1   0.2      0.033   14.2   0.1    1.9  2  GerPC         Spore germination protein GerPC
  ------ inclusion threshold ------
      0.021   15.1   1.8        2.4    8.7   0.1    3.2  2  Pea-VEAacid   Pea-VEAacid family
       0.44   11.3   2.9        2.1    9.1   2.0    2.6  2  COMPASS-Shg1  COMPASS (Complex proteins associated with Set1p


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6  11.4   1.7e-13   7.4e-10       1      51 [.     287     335 ..     287     336 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 1.7e-13
                 SBTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   1 rCavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 +C +C++  d+++ +++C+gC++wfH +C+k++++  e+  ++++C++C++
  CCE30797.1 287 YC-LCRG-PDDHRWMICCEGCEDWFHGECIKLNKDIGEHLIEKFICPNCTT 335
                 69.****.*****************************************86 PP

>> GerPC  Spore germination protein GerPC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   7.4e-06     0.033      79     137 ..      36      95 ..      19     114 .. 0.81
   2 ?   -1.8   0.0      0.61   2.7e+03      73     105 ..     441     473 ..     426     477 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.4e-06
       GerPC  79 lfqeiqeeveayLeeeapelle.elekqyeveldeeyrefileDikkQldsRikyYlkqv 137
                 + ++i++++e+y+e+++++ +e ++e+++e + +++ ++     i+ Q++s i+ Y+++ 
  CCE30797.1  36 IESRIESHIESYIENHIENHIEnRIENHIENHTESQVESQAESPIESQVESHIDSYIERS 95 
                 457889999999999999998735899999999999999999999999999999999863 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.61
       GerPC  73 neaeselfqeiqeeveayLeeeapelleelekq 105
                  +++  lf+ + +e +++L++ a+++l+  e++
  CCE30797.1 441 MTSDGPLFKILSHEENEFLDHTAQARLQLNEET 473
                 56666788889999999******9999988875 PP

>> Pea-VEAacid  Pea-VEAacid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.013        56       7      14 ..      42      49 ..      41      50 .. 0.94
   2 ?    8.7   0.1   0.00053       2.4       7      14 ..      86      93 ..      85      94 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.013
  Pea-VEAacid  7 SHVDSYVE 14
                 SH+ SY+E
   CCE30797.1 42 SHIESYIE 49
                 9******9 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00053
  Pea-VEAacid  7 SHVDSYVE 14
                 SH+DSY+E
   CCE30797.1 86 SHIDSYIE 93
                 9******9 PP

>> COMPASS-Shg1  COMPASS (Complex proteins associated with Set1p) component shg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.0   0.00046       2.1      30      86 ..      38      95 ..      23     109 .. 0.47
   2 ?   -1.6   0.0         1   4.5e+03       2      30 ..     338     367 ..     337     411 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00046
  COMPASS-Shg1 30 qnlrkkveeivesevkkdpsllfkn..rgkaaaliegeidrsdvykkleegvdrivdqd 86
                    +++ +e+++e++++++ +  ++n  ++++++++e++ ++  + +++e+++d++++++
    CCE30797.1 38 SRIESHIESYIENHIENHIENRIENhiENHTESQVESQAES-PIESQVESHIDSYIERS 95
                  23333333333333333332222221123333344444333.34444445555555544 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1
  COMPASS-Shg1   2 LveefKkkGeFDklRkei.ledfkeseaeq 30 
                   L++++Kk   +   Rk   l++ ++s  + 
    CCE30797.1 338 LATIYKKTCALNACRKAArLTQSEASAFCS 367
                   777788877777777763244444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1271  (0.0708907); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4211.14
//
Query:       CCE30798.1  [L=273]
Description: probable SCO1 protein precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-50  169.3   0.0    5.2e-50  168.8   0.0    1.2  1  SCO1-SenC      SCO1/SenC
     0.0005   20.0   0.0    0.00086   19.2   0.0    1.4  1  AhpC-TSA       AhpC/TSA family
     0.0097   16.2   0.0      0.032   14.5   0.0    1.9  1  Thioredoxin_8  Thioredoxin-like


Domain annotation for each model (and alignments):
>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   0.0   8.7e-54   5.2e-50       1     134 []     110     246 ..     110     246 .. 0.95

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 8.7e-54
   SCO1-SenC   1 ggpFelvdqdgeavteedlegkpslvffgFthCpdvCpttlanmaevldalgeea.ekvqplfiTvDPerDtpevlkeyleafdpriigltGskeeiak 98 
                 ggpFelvd++g+++t+e+++gk+ lv+fgFt+Cpd+Cp +l +ma+++d + e+a  ++qp+f+T+DPerD+p++lk+yl++f++++igltG+ ++i++
  CCE30798.1 110 GGPFELVDHNGQPFTSETMKGKYALVYFGFTRCPDICPEELDKMARMIDIVSEKApLPLQPVFVTCDPERDDPQALKSYLAEFHDKLIGLTGTYDQIKN 208
                 68****************************************************9899***************************************** PP

   SCO1-SenC  99 aakefrvyvekvedees..dytvdHsssvyLvdpdgrv 134
                 ++k +rvy+++ ++ +   dy+vdHs ++yL+dpdg++
  CCE30798.1 209 MCKMYRVYFSTPQNVKPgqDYLVDHSIYFYLMDPDGDF 246
                 ********87766555447****************986 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.4e-07   0.00086       8     104 ..     113     219 ..     109     247 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.4e-07
                 -EEESTTCEEEECHHHTTSEEEEEEESTST-C.CHHHHHHHHHHCH...HHCCCTTEEEEEEESSSCH.......HHHHHHHH-H....SSEEEE-TTS CS
    AhpC-TSA   8 felknadgetvslsdykgkpvvlffypkdwcp.vCttelpalakly...eefkergvevigvsvdspe.......shkkfiekes...lnfpllsDeeg 92 
                 fel +++g++++ +++kgk+++++f  +  cp  C++el ++a+++    e + + ++ + v++d++        s  +         + ++  +D+ +
  CCE30798.1 113 FELVDHNGQPFTSETMKGKYALVYFGFT-RCPdICPEELDKMARMIdivSEKAPLPLQPVFVTCDPERddpqalkSYLAEF---HdklIGLTGTYDQIK 207
                 999**********************888.6764799999998888722245555678999***999996666444333333...145599999999999 PP

                 HHHHHTT-EETT CS
    AhpC-TSA  93 kvakaygvlkee 104
                 +++k y v+++ 
  CCE30798.1 208 NMCKMYRVYFST 219
                 999999999876 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.4e-06     0.032       1      80 [.     130     215 ..     130     246 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.4e-06
                    .SEEEEEE--SSSHH.HHHHHHHHHHHHHHHHH..TTSEEEEEEE-S...S-HHHHHHHGGGS............-TTSEE.EE-TT-HHHHTT-S CS
  Thioredoxin_8   1 gkvvlLyfgaswcpp.ckaftpklkelyeklkk..kkkveivyvsld...kkeeefekylkkn............kkpwlsvpfddkkrnklkkky 78 
                    gk+ l+yfg + cp+ c + + k+ ++ + +++  +  ++ v+v +d    + ++ ++yl++             +            ++ ++k+y
     CCE30798.1 130 GKYALVYFGFTRCPDiCPEELDKMARMIDIVSEkaPLPLQPVFVTCDperDDPQALKSYLAEFhdkligltgtydQ------------IKNMCKMY 213
                    799************999999999999888887689**********955345678888888883334444444440............44444444 PP

                    -- CS
  Thioredoxin_8  79 nv 80 
                    +v
     CCE30798.1 214 RV 215
                    43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2063.21
//
Query:       CCE30799.1  [L=476]
Description: uncharacterized protein CPUR_04648 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-20   73.1   0.0    3.9e-20   71.8   0.0    1.7  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase
      7e-18   64.5   0.0      2e-17   63.0   0.0    1.8  1  Hydrolase_like  HAD-hyrolase-like
    8.6e-06   26.2   0.0       0.36   11.1   0.0    3.5  3  Hydrolase       haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   6.6e-24   3.9e-20       1     100 [.      88     193 ..      88     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 6.6e-24
                  EEEESTTTSEETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHH.HHTT----GG....GEEEHHHHHHHHHHHHSXXXEEEEESXH..HH CS
  Hydrolase_6   1 flfDidGvLwrgdkaipgaaealnalraagkpvvllTNnsskseeeyakkl.eklgvditee....qvvtsataaaeylkkrkadkkvlvigee..gl 91 
                  f+fDidGvL+rg++ ipg+ e+l+ ++a+ + +v+lTN+++ +e++ ++ l ++lg++++e+    +v+ s+t+++ +  +  ++++vl++g++  ++
   CCE30799.1  88 FAFDIDGVLYRGGQGIPGVREMLRSIHAKDICYVFLTNGGGTHEDTKVASLtKRLGLSMDEDvvqdRVILSHTPMRGWADR-VKKQTVLITGSHpeRA 184
                  78*************************************************888****76655555***********9997.999********64489 PP

                  HHHHHHTTX CS
  Hydrolase_6  92 reelkeagf 100
                  re+++e+gf
   CCE30799.1 185 REIANEYGF 193
                  9******99 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   3.3e-21     2e-17       2      74 ..     350     453 ..     349     454 .. 0.82

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 3.3e-21
                     .STTSSHHHHHHHHHH........................---GGGEEEEES-TTTHHHHHHHC......T-EEEEESSSSS-TTTHHHHH.HHH CS
  Hydrolase_like   2 lgKPepemydfalevl........................gsdpeevlmiGDrlatDiagAnna......GwksvLVltGvtrpedleepe.hkp 65 
                     lgKP++++yd+a+ +l                          + ++v+miGD++++Di+gAn++       w s+LV+tGv +++++++++ ++p
      CCE30799.1 350 LGKPSQFTYDYAHTRLlqhhsrmnsgstatksssdgstgkATKLRRVYMIGDNPESDIRGANEFcpedgtEWVSILVKTGVWQETAAKKEPrYRP 444
                     7***************99999888888877776665555444499*****************864444336**********999888885559** PP

                     T---SEEES CS
  Hydrolase_like  66 tyvaddlae 74 
                     ++++dd  +
      CCE30799.1 445 AAIVDDAVD 453
                     *****9766 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0014       8.5       3      26 ..      87     113 ..      87     134 .. 0.83
   2 !   11.1   0.0   6.1e-05      0.36     135     157 ..     171     194 ..     154     233 .. 0.79
   3 !    4.4   0.0    0.0067        40     184     207 ..     391     411 ..     298     413 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0014
                 EEEEESBTTTBCHH...HHHHHHHHHH CS
                 xxxxxxxxxxxxxx...xxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttge...psvedvivsa 26 
                 +++fD+dG+L++g    p v++ ++s+
  CCE30799.1  87 AFAFDIDGVLYRGGqgiPGVREMLRSI 113
                 689********8876668888888777 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.1e-05
                 EEEEEEESSEHHHHHHHHHHTT.G CS
                 xxxxxxxxxxxxxxxxxxxxxx.x RF
   Hydrolase 135 ievvlltgdnpetaeraanqlG.d 157
                  ++vl+tg++pe a+++an++G  
  CCE30799.1 171 KQTVLITGSHPERAREIANEYGfS 194
                 47********************42 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0067
                 HHHTSTGGGEEEEESSHH.HHHHHH CS
                 xxxxxxxxxxxxxxxxxx.xxxxxx RF
   Hydrolase 184 reLqgkpeevamVGDgvn.Daaala 207
                  +L    ++v m+GD++  D+ ++ 
  CCE30799.1 391 TKL----RRVYMIGDNPEsDIRGAN 411
                 444....78*********9*99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3679.89
//
Query:       CCE30800.1  [L=749]
Description: related to choline kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-60  202.3   0.7      1e-59  201.7   0.0    1.6  2  Choline_kinase  Choline/ethanolamine kinase
    2.6e-18   65.4   0.0    6.6e-18   64.1   0.0    1.7  1  Choline_kin_N   Choline kinase N terminus
    2.2e-07   31.0   0.1    2.2e-07   31.0   0.1    2.5  3  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.5      0.92   5.5e+03      87     121 ..     106     140 ..      92     180 .. 0.57
   2 !  201.7   0.0   1.7e-63     1e-59       2     212 ..     327     578 ..     326     579 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.92
                     SSSS-HHHHHHHHHHHCCS.TT..ECHHGGCCHCC CS
  Choline_kinase  87 skespslwktmqkwllnkeaqtkakkekkkkqlkl 121
                         + l  ++ +wl++++++++a +++++++ k+
      CCE30800.1 106 HYYAEKLLAQVSDWLEHEKNKRSAARKPRSHRRKS 140
                     44455566666667444444444444444433333 PP

  == domain 2  score: 201.7 bits;  conditional E-value: 1.7e-63
                     SSEEEEEEE-TTCTTCCHHHHHHHHHHHHHHTTSSS-EEEEETTEEEEE--TCEE--TTGGGCHHHHHHHHHHHHHHTTCHH...TTSSSS-HHH CS
  Choline_kinase   2 kkkvllRiygkkteelidretElvvfallserglgpklygifenGrieefiesrtlstedlrepeiskkiAkklaelHslel..eseskespslw 94 
                     ++k+llR+yg+++e+lidre+El+v+++l+++++gp+l+g+f+nGr+e+++++ tl++++lrep++sk iAk+++elH+     + e++  p++w
      CCE30800.1 327 PEKILLRVYGPQVEHLIDRENELKVLQRLARKKIGPRLLGTFKNGRFEQYFNAITLTPAHLREPDTSKSIAKRMRELHDGIDllPLEREGGPNVW 421
                     799***************************************************************************9754466789999**** PP

                     HHHHHH...................HHCCS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHHH.......CHGG-EEEE-S--SGGGEEE.... CS
  Choline_kinase  95 ktmqkw...................llnkeaqtkakkekkkkqlklinledlekelekleklle.......elespvvfcHnDlqegNill.... 159
                     +++++w                     ++e +   + +k++  ++ + +e++ +++ k++ ++e        ++  +vf+HnD+q+gNil     
      CCE30800.1 422 RNWDQWlanvakittyldqqyergrDAQSEGASVVHAWKENGYVCGVPWEQFLQMVVKYRTHVEscyktkrTIKDRLVFAHNDTQYGNILRirpd 516
                     ******************99988876666777888999999**********************8677666666666******************* PP

                     ..........-CTTEEEE--GTT-EEEEHHHHHHHHHHHTTEEHHHCSTSHEE-GGGS--HH CS
  Choline_kinase 160 .........nkeekklvlIDFEYagynyrgfDlanhfiEwagdyeeeeaffkldyskypsre 212
                              ++++k+l++IDFEYa++n+ g ++anhf+Ew+++y++++ ++ ++ ++yp+ e
      CCE30800.1 517 dekspllqpANKHKQLIVIDFEYAAANTPGLEFANHFSEWTYNYHDATSPYVCNHERYPTPE 578
                     ***********************************************************987 PP

>> Choline_kin_N  Choline kinase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   1.1e-21   6.6e-18       1      47 [.     219     289 ..     219     293 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 1.1e-21
  Choline_kin_N   1 sslsdedelvpsvdavLDnskpsdy........................FKeeilrLlhtLalkgWrdvpl 47 
                    +++ d+d  vps+da LDnsk+++y                        FK+ei+r++htL+lkgWr++ l
     CCE30800.1 219 TDYADGDAIVPSCDAWLDNSKTLSYtggaastddllscqldkdsdawltFKNEIIRIAHTLRLKGWRRISL 289
                    799*****************************************************************976 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3      0.27   1.6e+03     117     161 ..      78     125 ..      66     137 .. 0.61
   2 !   31.0   0.1   3.8e-11   2.2e-07       2     218 ..     297     562 ..     296     594 .. 0.75
   3 ?   -1.1   0.1      0.24   1.4e+03      78     116 ..     658     692 ..     633     732 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.27
                 SHHCHTCCHHHHHHCHHH.CCCGCCTCC..HHHHHHHHHHHHHHHH-- CS
         APH 117 dflaqdlellrqlesata.rllaselld..lleeleeqvlaalaallp 161
                 +f++   +l +++e+a   ++ ++ ++    +e+l +qv ++l+ +  
  CCE30800.1  78 SFSENLTALRPDEEAAVStNHQHHSQRHhyYAEKLLAQVSDWLEHEKN 125
                 555544444444444444444444444448889999999999987665 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 3.8e-11
                 EEEE--.SSCEEEEEEETT..-..........-EEEEEE-TT.S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHH CS
         APH   2 vrelsggasnrtylvttpa..g..........ryvlrrnppa.raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrkls 87 
                 v++lsg + n +y vt p+  g          + +lr++ p+ +   + ++e+++l+ La+ ++  P++l + +++ ++  +f +i+  p++ +++   
  CCE30800.1 297 VERLSGALTNAVYVVTPPKnlGesvegrktpeKILLRVYGPQvEHLIDRENELKVLQRLARKKI-GPRLLGTFKNGRFEQ-YFNAITLTPAHLREP--- 390
                 788999999*******8885445555555555666*******9999999999************.9*****888888888.5**************... PP

                 HHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC.HHHHHHHH.....................HHHHHHHH--S.. CS
         APH  88 aaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselld.lleeleeq.....................vlaalaallpg.. 162
                      +    ++   ++lh+   + lpl++++ ++++ +++   a+ +++   l++    e+ +                       ++++++ + +  
  CCE30800.1 391 -----DTSKSIAKRMRELHDG-IDLLPLEREGGPNVWRNWDQWLANVAKITTYLDQqY--ERGRDaqsegasvvhawkengyvcgvPWEQFLQMVVKyr 481
                 .....5566666666666666.666677777776666666666666666666666631..222222356777777777788888886666666666677 PP

                 .............SS-EEEE-SS-SGGGEEEC................TTEEEEE---TT-EEEECCHHHHCCHHHCSCHCCC CS
         APH 163 .............elptvllHgDlhpgNllvd..............pddgrvtGviDfedaglgpplyDlavllrswtseldp 218
                               ++ v+ H+D   gN+l                ++++    viDfe+a +  p  ++a +   wt + ++
  CCE30800.1 482 thvescyktkrtiKDRLVFAHNDTQYGNILRIrpddekspllqpanKHKQL--IVIDFEYAAANTPGLEFANHFSEWTYNYHD 562
                 77777777888899*****************99**********96555555..5*******************9548866664 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.24
                 --EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB- CS
         APH  78 pgrsllrklsaaqlpellealgeflaalhqvdpaalpla 116
                 + + l+r    +   +++ a+g ++a++  +d+++ p +
  CCE30800.1 658 EEARLWR----PGNSAMWVAWGIVQARIPGLDADNEPAC 692
                 3455555....5566777777777777777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5387.24
//
Query:       CCE30801.1  [L=679]
Description: related to bood POZ containing protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-22   79.1   0.1    2.3e-11   43.9   0.2    2.9  3  BTB       BTB/POZ domain
     0.0022   18.2   0.0     0.0062   16.8   0.0    1.8  1  Ank_5     Ankyrin repeats (many copies)
  ------ inclusion threshold ------
       0.16   12.6   0.0       0.54   10.9   0.0    1.9  1  Ank_4     Ankyrin repeats (many copies)
       0.16   11.3   0.0        0.3   10.4   0.0    1.4  1  AIG1      AIG1 family


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   4.2e-11   1.9e-07      10      75 ..     163     224 ..     157     234 .. 0.84
   2 !   43.9   0.2   5.1e-15   2.3e-11      23     107 ..     394     478 ..     389     481 .. 0.88
   3 ?   -1.6   0.0       0.7   3.1e+03      76     109 ..     510     542 ..     507     544 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 4.2e-11
                 TS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSE CS
         BTB  10 lcDvtlvvgdgkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtge 75 
                  +D tl++g  ++f+ hk+ La+r p+F++ f+s++     + ++e d    eaf ++L+ iY + 
  CCE30801.1 163 TSDFTLKAG-SQSFPLHKFLLASRTPFFQQKFQSNP--GLASWTLE-DSAPVEAFSIVLRHIYLDD 224
                 68*******.7************************4..33323565.777779**********876 PP

  == domain 2  score: 43.9 bits;  conditional E-value: 5.1e-15
                 EEE-HHHHHHH-HHHHHHHTST..TTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-CGGGHHHHHHHHHHHT-HHHHHHHHHHH CS
         BTB  23 fkahkavLaarSpyFkalftsk..eieessvseielddvepeafealLefiYtgeleitseenleelLaaadllqiprlkkaceefl 107
                 +++hka L  rS+yF+++f+++  e++ ++  +i   dv+p ++e +L ++Y ++  i+  + + ++L+aad+l +++lk+++ + +
  CCE30801.1 394 YPVHKAML-IRSEYFSKMFSGDflESQHAEHLRIITIDVSPPVLELVLTYLYIENPIIP-LQHALDVLYAADMLFLDALKTKAAQAI 478
                 78999988.69***********774444444488889*********************8.*********************998876 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.7
                 EEC-CGGGHHHHHHHHHHHT-HHHHHHHHHHHHH CS
         BTB  76 leitseenleelLaaadllqiprlkkaceeflkq 109
                 le++   n+ ++ +aa  l+++rl + + ++l  
  CCE30801.1 510 LETE-PINIYDVVHAAWDLRVRRLEEFAARYLAY 542
                 6665.88999**************9999888865 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.4e-06    0.0062      12      55 ..      25      66 ..      14      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.4e-06
       Ank_5 12 ldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55
                +d+  + ++++A+++g ++ ++++++rg+++n +ds  +t+l l
  CCE30801.1 25 SDE--FKAFILACRHGDLPKCQEYINRGVNINGRDSFDYTPLIL 66
                344..499*********************************987 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.54       6      42 ..      32      67 ..      28      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
       Ank_4  6 hyaaisgrlelvrlLlekgadinaqdnrsGetalhiA 42
                  a+ +g+l+ ++  +++g++in + ++ + t+l+ +
  CCE30801.1 32 ILACRHGDLPKCQEYINRGVNINGR-DSFDYTPLILV 67
                56889********************.********976 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.8e-05       0.3      94     129 ..     286     319 ..     282     357 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.8e-05
                 TB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG CS
        AIG1  94 grfteedekalktlkelFGekilkylivvftrkddl 129
                 +rf +e+e alk+l+e+F +kil + +vv   +d++
  CCE30801.1 286 QRFLDEEERALKQLREFFTSKILANKVVVD--ADQA 319
                 5999***********************993..3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5173.12
//
Query:       CCE30802.1  [L=788]
Description: probable NIMA-like protein kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-55  186.8   0.2    1.8e-34  119.3   0.0    2.2  2  Pkinase      Protein kinase domain
      3e-37  128.3   0.0    1.8e-26   93.0   0.0    2.2  2  Pkinase_Tyr  Protein tyrosine kinase
     0.0014   18.0   0.0     0.0028   17.0   0.0    1.5  1  Kinase-like  Kinase-like
  ------ inclusion threshold ------
       0.03   14.5   1.8       0.49   10.6   0.1    2.6  2  DUF3896      Protein of unknown function (DUF3896)
      0.095   12.6   1.0       0.39   10.6   0.0    2.3  3  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.3   1.6e-21   5.9e-18       1     115 [.       7     127 ..       7     129 .. 0.92
   2 !  119.3   0.0     5e-38   1.8e-34     117     262 ..     158     291 ..     157     293 .. 0.86

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 1.6e-21
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEE..EEEESSEEEEEEE--TTEBHHHHHH...HHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlye..vfeekdelylvleyveggeladlle...rkgs 94 
                 y +lek+G+GsfG++ k+++k++g i++ K+i+  ++++k+++++ +E +il +l+hpniv +y+   ++ +++l+l +ey+ +g+l ++++   +kg+
  CCE30802.1   7 YDTLEKIGHGSFGVIRKVRRKTDGFIMCRKEISYLRMSQKEREQLHAEFQILSHLRHPNIVAYYHreHLKASQDLHLYMEYCGNGDLGRVIKdlqQKGK 105
                 67899**********************************************************9722566799*************9999999985555 PP

                 .--HHHHHHHHHHHHHHHHHHH CS
     Pkinase  95 .lseeeakkiakqilegleylH 115
                   +e+ + +i++q++ +l  +H
  CCE30802.1 106 rAQESFVWSIFSQLVMALYRCH 127
                 59999999************99 PP

  == domain 2  score: 119.3 bits;  conditional E-value: 5e-38
                 TTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHH CS
     Pkinase 117 kgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlek 215
                 + ++HrDlKpeN+++ +++ +K++DFGl+k ++s+  ++++vgt+ Y++PE+  +++y+ k+D+WslG+i+yel +++ppf+++++     + ++    
  CCE30802.1 158 MTVLHRDLKPENVFLGDDNSVKLGDFGLSKMIKSQDFASTYVGTPFYMSPEICAAEKYTLKSDIWSLGCIMYELCAREPPFNAKTHY----HLIQ---- 248
                 679*************9*****************************************************************33332....2333.... PP

                 HHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSG CS
     Pkinase 216 ilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhp 262
                   ki +   +    +   s+e+  +++++l+++p +R+  ++ll+ p
  CCE30802.1 249 --KIKEG--KVATLPAMYSPELNTVIRDCLRVNPDRRPDTAQLLELP 291
                 ..33322..233445667************************99876 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1   9.8e-12   3.5e-08       4      98 ..      10     103 ..       7     123 .. 0.79
   2 !   93.0   0.0   4.9e-30   1.8e-26     122     257 ..     158     289 ..     156     290 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 9.8e-12
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST.TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlke.eateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkkeke 98 
                   +k+G+G+fG + + + k    ++      K ++  +++++e+e+l  e +i+++l+hpniv+++       ++ l + +ey+ +GdL   +++ +++
   CCE30802.1  10 LEKIGHGSFGVIRKVRRK----TDGFIMCRKEISYlRMSQKEREQLHAEFQILSHLRHPNIVAYYHREHlkASQDLHLYMEYCGNGDLGRVIKDLQQK 103
                  689**********99999....4444444455533166777799*********************9877658888*************9999887433 PP

  == domain 2  score: 93.0 bits;  conditional E-value: 4.9e-30
                  TTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHH CS
  Pkinase_Tyr 122 kklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklk 219
                  ++++Hrdl   Nv+l +++ vk++DfGL++ i+++d     ++      +m+pE+  ++k+t ksD+Ws G +++E++   e p++  ++ ++++k+k
   CCE30802.1 158 MTVLHRDLKPENVFLGDDNSVKLGDFGLSKMIKSQDFA---STYVGTPFYMSPEICAAEKYTLKSDIWSLGCIMYELCA-REPPFNAKTHYHLIQKIK 251
                  6799****************************444333...33445567*****************************9.899*************** PP

                  TTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 220 egkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  egk  + p+  ++el++++++c++ +p++Rp+ ++l+e
   CCE30802.1 252 EGKVATLPAMYSPELNTVIRDCLRVNPDRRPDTAQLLE 289
                  ********************************999875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.8e-07    0.0028     165     255 ..     160     243 ..     157     281 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.8e-07
  Kinase-like 165 lvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlate 255
                  ++h +++++n++l  +  ++lg+f+     + +  +s+      +  pE++++          k+t k d W lG  +y + +++ P++ +t 
   CCE30802.1 160 VLHRDLKPENVFLGDDNSVKLGDFGLSKMIKSQDFASTYVgtPFYMSPEICAA---------EKYTLKSDIWSLGCIMYELCAREPPFNAKTH 243
                  89**********************85544555555444333345899****99.........579********************99998775 PP

>> DUF3896  Protein of unknown function (DUF3896)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00014      0.49      21      43 ..      33      56 ..      26      74 .. 0.80
   2 ?    2.4   0.3     0.049   1.8e+02      21      44 ..     323     343 ..     311     345 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00014
     DUF3896 21 lCkk.lssltlskkereqlkleid 43
                +C+k +s l +s+kereql  e  
  CCE30802.1 33 MCRKeISYLRMSQKEREQLHAEFQ 56
                57664899***********99965 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.049
     DUF3896  21 lCkklssltlskkereqlkleidn 44 
                 l +++s l   ++ere ++ eid 
  CCE30802.1 323 LGDRFSGL---EREREMIREEIDS 343
                 55555554...79*********95 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.29     1e+03      32      84 ..      46      95 ..      22     115 .. 0.63
   2 ?   10.6   0.0   0.00011      0.39     161     197 ..     154     187 ..     139     203 .. 0.78
   3 ?   -3.4   0.4       2.1   7.6e+03     125     158 ..     357     386 ..     333     397 .. 0.47

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.29
                S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH 32 raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84
                ++ e++++e+++l +L+  ++   ++++ ++    +  l + +ey++  +l r
  CCE30802.1 46 KEREQLHAEFQILSHLRHPNI---VAYYHREHLKASQDLHLYMEYCGNGDLGR 95
                346777777777777776656...33443444444444777777777777666 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00011
                 -SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 161 pgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 p ++++++lH+Dl+p N+ + +d+     + Df++++
  CCE30802.1 154 P-AGAMTVLHRDLKPENVFLGDDNSVK--LGDFGLSK 187
                 3.6899***************555444..55666655 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.1
                 HHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHH CS
         APH 125 llrqlesatarllaselldlleeleeqvlaalaa 158
                  +r+ +++    l++++++  ee+  +v a++ +
  CCE30802.1 357 IDRLANNE----LQRLQKQFEEEVKLRVEAEVQK 386
                 22222222....2222222223344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1154  (0.064365); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.38
# Mc/sec: 6145.61
//
Query:       CCE30803.1  [L=175]
Description: uncharacterized protein CPUR_04652 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   14.8   0.2      0.038   13.4   0.1    1.5  2  Not3      Not1 N-terminal domain, CCR4-Not complex component
      0.015   15.0   0.0      0.025   14.3   0.0    1.4  1  Use1      Membrane fusion protein Use1


Domain annotation for each model (and alignments):
>> Not3  Not1 N-terminal domain, CCR4-Not complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   4.3e-06     0.038     131     217 ..      56     142 ..      52     148 .. 0.83
   2 ?    4.5   0.1    0.0023        21     129     164 ..     128     163 ..     127     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.3e-06
        Not3 131 aideLneqvekleaeieklsskkkkkkkskekarveeleklierhkfhieklelllrlleneelepeevekikedieyyvesnqded 217
                 ++  L + +++l a++e+   + +++ +  ++ + +++ ++i+     i++  ++lr+l++ el+ +++++ike ++ y ++ +d +
  CCE30803.1  56 SLAALGRYFDRLMASVEQSMFRLSEQAQLFTQVQYDRAGNIIDGADAEIARYMEILRQLDELELDFDRIAHIKEIVKGYRQRVEDVE 142
                 566777888888888888888777766533345999999****************************************99888765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0023
        Not3 129 kdaideLneqvekleaeieklsskkkkkkkskekar 164
                 k++++  +++ve++e e+e   s+++++k++++++r
  CCE30803.1 128 KEIVKGYRQRVEDVERELEASGSSSHHHKHTSSHKR 163
                 78899999************9999888876333332 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.8e-06     0.025      28      91 ..     104     168 ..      91     175 .] 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.8e-06
        Use1  28 LekyvkaleemleeLkkessk..pskevlkeYsekveaLkllleaeklssteekalanqllapgee 91 
                 + +y ++l+ +l+eL+ + ++    ke++k Y+++ve +++ lea+ +ss   k   +++ ++   
  CCE30803.1 104 IARYMEILR-QLDELELDFDRiaHIKEIVKGYRQRVEDVERELEASGSSSHHHKHTSSHKRSHRGA 168
                 567777776.5788888888766789***********************99999998888877622 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1501.48
//
Query:       CCE30804.1  [L=214]
Description: related to putative C2H2 zinc finger protein flbC [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-09   36.2  13.0     0.0004   20.7   3.9    2.7  2  zf-C2H2      Zinc finger, C2H2 type
    2.7e-07   30.7  11.3    2.6e-05   24.4   0.8    3.4  3  zf-H2C2_2    Zinc-finger double domain
     0.0011   19.3   4.4     0.0034   17.7   2.2    2.5  2  zf-met       Zinc-finger of C2H2 type
     0.0018   18.5   3.1     0.0077   16.5   0.5    2.6  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
      0.019   14.9   1.4      0.019   14.9   1.4    2.4  2  zf-C2H2_6    C2H2-type zinc finger
      0.053   13.6   2.6        7.5    6.8   0.5    2.5  2  Zn-ribbon_8  Zinc ribbon domain
      0.057   14.3   2.7      0.057   14.3   2.7    3.0  3  zf-C2H2_4    C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   3.9   1.6e-07    0.0004       1      23 []     158     180 ..     158     180 .. 0.95
   2 !   20.2   1.8   2.2e-07   0.00055       1      23 []     186     211 ..     186     211 .. 0.96

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.6e-07
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y C  C+k+F+r+s+L+ H  +H
  CCE30804.1 158 YMCQTCNKTFSRPSSLRIHSHSH 180
                 89*****************8887 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2.2e-07
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 ykC+  +Cgk F+ +sn+krH r  H
  CCE30804.1 186 YKCSraGCGKAFSVRSNMKRHERGcH 211
                 9********************99888 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.5   0.00029      0.73      10      25 ..     153     168 ..     139     169 .. 0.83
   2 !   24.4   0.8     1e-08   2.6e-05       2      25 ..     173     198 ..     172     198 .. 0.92
   3 ?    1.6   0.2      0.17   4.5e+02       1      10 [.     202     212 ..     202     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00029
   zf-H2C2_2  10 tgekpyeCplCdkaFk 25 
                 +++ +y C  C+k+F+
  CCE30804.1 153 HNPDRYMCQTCNKTFS 168
                 56778**********8 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 1e-08
   zf-H2C2_2   2 LrrHirkHtgekpyeCp..lCdkaFk 25 
                 Lr H  +Htgekpy+C+   C+kaF+
  CCE30804.1 173 LRIHSHSHTGEKPYKCSraGCGKAFS 198
                 8899**************88****95 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.17
   zf-H2C2_2   1 nLrrHirk.Ht 10 
                 n +rH r  Ht
  CCE30804.1 202 NMKRHERGcHT 212
                 689***95598 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   2.2   1.3e-06    0.0034       1      19 [.     158     176 ..     158     180 .. 0.89
   2 ?    0.7   0.0      0.29   7.5e+02       6      22 ..     193     209 ..     193     209 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
      zf-met   1 fyCelCnvtfnsesqlksH 19 
                 ++C  Cn+tf+ +s+l+ H
  CCE30804.1 158 YMCQTCNKTFSRPSSLRIH 176
                 78***************** PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.29
      zf-met   6 CnvtfnsesqlksHlqG 22 
                 C + f+ +s++k H +G
  CCE30804.1 193 CGKAFSVRSNMKRHERG 209
                 6677777899****998 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.5     3e-06    0.0077       2      20 ..     158     176 ..     157     180 .. 0.90
   2 ?    1.5   0.1      0.16     4e+02       7      23 ..     193     209 ..     193     210 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3e-06
                  CBBTTTTBBBSSHHHHHCC CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnH 20 
                  + C++C+K+F+  ++l+ H
   CCE30804.1 158 YMCQTCNKTFSRPSSLRIH 176
                  89**************988 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.16
                  TTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkS 23 
                  C K F+  ++++ H+++
   CCE30804.1 193 CGKAFSVRSNMKRHERG 209
                  889999999*****997 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.4   7.5e-06     0.019       2      24 ..     158     180 ..     157     183 .. 0.91
   2 ?   -2.0   0.1       1.6     4e+03       7      12 ..     193     198 ..     192     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.5e-06
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksH 24 
                 + C++C+k+F+   +L+ H  sH
  CCE30804.1 158 YMCQTCNKTFSRPSSLRIHSHSH 180
                 78*****************9999 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
   zf-C2H2_6   7 CsksFp 12 
                 C+k F+
  CCE30804.1 193 CGKAFS 198
                 ****96 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0034       8.8       6      17 ..     158     169 ..     157     184 .. 0.80
   2 ?    6.8   0.5    0.0029       7.5       6      24 ..     186     206 ..     185     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0034
  Zn-ribbon_8   6 YrCeeCghefev 17 
                  Y C+ C+++f +
   CCE30804.1 158 YMCQTCNKTFSR 169
                  99********83 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0029
  Zn-ribbon_8   6 YrCee..Cghefevlqsisda 24 
                  Y+C +  Cg+ f v+  +++ 
   CCE30804.1 186 YKCSRagCGKAFSVRSNMKRH 206
                  99*9999********999853 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.0   2.6         7   1.8e+04      22      23 ..     139     140 ..     136     142 .. 0.49
   2 ?   14.3   2.7   2.2e-05     0.057       1      23 [.     158     180 ..     158     181 .. 0.94
   3 ?   10.7   1.5   0.00031       0.8       1      24 []     186     211 ..     186     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: -6.0 bits;  conditional E-value: 7
   zf-C2H2_4  22 th 23 
                  h
  CCE30804.1 139 HH 140
                 23 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.2e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 + C  C+k+Fs++++L+ H  +h
  CCE30804.1 158 YMCQTCNKTFSRPSSLRIHSHSH 180
                 78*****************9888 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00031
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkthH 24 
                 +kC+   Cgk Fs +++++rH +  H
  CCE30804.1 186 YKCSRagCGKAFSVRSNMKRHERGCH 211
                 8999999*****99999****99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1786.25
//
Query:       CCE30805.1  [L=606]
Description: related to acriflavine sensitivity control protein ACR-2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-34  118.5   0.2    3.5e-34  118.2   0.2    1.1  1  Fungal_trans_2   Fungal specific transcription factor domain
    8.3e-06   25.8   8.8    1.2e-05   25.3   8.8    1.3  1  Zn_clus          Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.2     4e-38   3.5e-34       2     382 ..     211     604 ..     210     606 .] 0.76

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 4e-38
  Fungal_trans_2   2 lldyyldnvapllspvpes.snpfrkvllplalsnkallhallalsafhl..............qskgpkds......lereakrykslalkelq 75 
                     +l+y+ ++v++ l  ++ + +npfr  l+pl  +++ l h ++a+sa h+                     +      + + ++r ++ al    
      CCE30805.1 211 YLSYFATRVCKDLVSHDLPdRNPFRG-LIPLTRAHPLLQHIIVAASASHMsnlvrapltsrngeV------GenlraiIHQASRRALNDALLAKA 298
                     89*****************9*****9.57*********************999999985554440......333445544444444444444444 PP

  Fungal_trans_2  76 ealaelsstls..rnekykdiLaaiLllcsieissgdvsdwrvhLeaatsliksrggs..kasssslsskarfllrifayldilssttlgrgpsf 166
                      al  ++   +  + +  + iLaa L+ + +e +++ ++ w+ hLe+a ++++ ++++  ++++ +++   ++++ +++    + + +l+++++f
      CCE30805.1 299 TALGLMRGAVEnmKTTGADVILAAALFFINVELIESGKHGWKAHLEGAGRIMSLLQPTvgAETTLRDYMLSDCFIYFIMASAFMPAVSLDSQSYF 393
                     444444444445555555****************************************6666666666666666666666666666666666666 PP

  Fungal_trans_2 167 pseeyekllenkkeesdsgldplmGcsnslilliseisrLarekrsarkd..seleplsileeaseleqrllswkprssdlepdldeterassls 259
                        +  ++l++         + ++ c+++++ ++ + s+L++   +a+     ++  l++l+ea+++  ++     r+  + p  +  +r     
      CCE30805.1 394 KPAQIISILRR------AAANNYLCCPPEILIILYSASQLSNASSDASTVdeIRDAGLQLLQEAQSFDIDAWANDARNMEYMPGVPIQSRV---- 478
                     66666666666......88999*********************999999945555555555555555444433333333333333333333.... PP

  Fungal_trans_2 260 kdltelfrlaaliylyrlv...lglppsspevqelvkkllellellpsspvaiasLlWplFiaGceavdeddRdfvrrrleele.qsrl..gnvr 348
                      +  ++ rlaa++y+++++    ++p +++ v+ l ++++e+l+ +++++   +  +Wp FiaG+ea d++ Rd+v +rl++l     +  g   
      CCE30805.1 479 -HAGSAHRLAACLYILQAIpplAEIPNHDEAVRLLSDNIIEHLSCISDDDPNFKATTWPTFIAGAEARDPPRRDWVMNRLKRLVvS--CpwGFLY 570
                     .33669*************5544455559******************76666999*****************************55..555**** PP

  Fungal_trans_2 349 rarqvleevWrrrddgeekidWrdvmekkgwell 382
                     +a++ l+++W    +   + +W +++++ + ++l
      CCE30805.1 571 TAMDTLQSLWDLDSKVMGTKSWVQLLKDPDLNFL 604
                     **************999999******76666655 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   8.8   1.4e-09   1.2e-05       1      33 [.       9      41 ..       9      48 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.4e-09
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfy 33
                +aC nCrk++ +Cd+  P+C +C+ ++  C  y
  CCE30805.1  9 KACHNCRKQRLRCDRSYPQCNKCVNSGRVCLGY 41
                59*************************999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1012  (0.0564449); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.38
# Mc/sec: 4745.08
//
Query:       CCE30806.1  [L=848]
Description: uncharacterized protein CPUR_04655 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-11   42.8   0.0    1.9e-10   40.7   0.0    2.1  2  EST1_DNA_bind  Est1 DNA/RNA binding domain


Domain annotation for each model (and alignments):
>> EST1_DNA_bind  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.27   4.8e+03     198     231 ..     344     379 ..     307     398 .. 0.57
   2 !   40.7   0.0     1e-14   1.9e-10       1     276 [.     435     711 ..     435     717 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.27
                    ..-SS-THHHHHHHHHHHHHTT-HHHH..HHHHT-H CS
  EST1_DNA_bind 198 ketpsatrvLpalrvylswlksnksll..edvekde 231
                    +  + at + +++r + + ++s  +ll  +  e++e
     CCE30806.1 344 SLKSLATKYAMPARMWRHGIHSFLELLraKLPESHE 379
                    555666666666666666666666555433344444 PP

  == domain 2  score: 40.7 bits;  conditional E-value: 1e-14
                    HHHHHHHHHHH-TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHHHBSB--TTHHHHHHHHHT-TT-HHHHHHHHHHHHHTT---HHHHHHHHHHTTH CS
  EST1_DNA_bind   1 AlrYYllAaellPsnGepyNQlgviaiysedkldavYyylRSllssnpfptAkeNLellfekirkklekgenkqskeskqektpeellkrliilFl 96 
                    A+ +Y +A++ +P+ G+ y++l+++a  +   l+  ++y  Sl++++pf++A+++ ++ f+  +     g+    +         + ++ + + F+
     CCE30806.1 435 AKYWYTQASDNAPTTGRLYHHLAILARPN--VLEQLFFYSKSLCVKDPFSSAWDSILTFFDSLLD---TGSLF--Y---------QRRDPVHAAFV 514
                    6679*********************9865..*****************************99844...22222..2.........455666667** PP

                    HHHHHHHSTTTT..TSSTTGHHHHHHHHHHHHHHHHHH......HHHHHHHHHHHHHHHHH.HHH-S--SXXXXXXXXX..............XXX CS
  EST1_DNA_bind  97 rlhgklftgtsfkdelerevlkklqillseslkernlk......daslllkmllinifaie.nlkdkssgeeskektll..............llr 171
                    r+hg+lf+++    + + + +++++ +l  ++  + +       +  + l +ll+ +++ + +l +  s+++ + ++++                +
     CCE30806.1 515 RVHGILFSDKGT--DQLQSAMDHFHGSLEHHIVAEQDNwlepgyHMAISLSCLLLGYGSKSnVLMQAMSHSSGDGDVENgtsqdhadadaiivRPN 608
                    ************..6666777777777777776666667766655566677777777776676777777777777777777445445555554444 PP

                    XHHHHHHHHHHHHHHHTGGGTTT.....-SS-THHHHHHHHHHHHHTT-HHHHHHHHT-HHHHHHHHHHHHHHHH-.....--------------- CS
  EST1_DNA_bind 172 lalrfifelfglllekvetlealkrdketpsatrvLpalrvylswlksnkslledvekdeklvsslsdllnellss.....ellnksfdvekdpkr 262
                     a+ ++ ++ g+ ++ v             +   +L   +v+  +++  +s  + +ek+ + ++ ls  ln+l++      +  ++ f+ +++++ 
     CCE30806.1 609 PAFDTAVSFAGKTCDVVMGCGGA------KNTLACLHTTLVFYLFMHQRPSAMSLLEKHFP-WKLLSRTLNRLRRMcdfppRIDTTDFPGPEKSEP 697
                    49999999999999866655544......78889****************99966776666.*************999998888888899999988 PP

                    SS--HHHHHTTTBG CS
  EST1_DNA_bind 263 dylleEDielkgFs 276
                     + l+ED+ ++g+ 
     CCE30806.1 698 PHPLPEDYAMRGLI 711
                    8*********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (848 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 6364.93
//
Query:       CCE30807.1  [L=506]
Description: related to E.coli molybdopterin-converting factor chlN [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-40  138.9   0.0    2.8e-40  138.2   0.0    1.2  1  ThiF             ThiF family
    4.9e-05   23.6   0.0    0.00015   22.0   0.0    1.8  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0043   17.3   0.1      0.016   15.4   0.1    2.0  1  TrkA_N           TrkA-N domain
  ------ inclusion threshold ------
      0.016   15.7   0.0      0.047   14.1   0.0    1.8  1  NAD_binding_7    Putative NAD(P)-binding
      0.019   14.5   0.1      0.035   13.7   0.1    1.4  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
      0.047   12.9   0.0       0.07   12.3   0.0    1.2  1  Melibiase_2      Alpha galactosidase A
       0.17   11.5   0.1       0.32   10.6   0.1    1.5  1  ApbA             Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.2   0.0   1.1e-43   2.8e-40       2     221 ..     103     376 ..     102     388 .. 0.79

  Alignments for each domain:
  == domain 1  score: 138.2 bits;  conditional E-value: 1.1e-43
                 HHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCGC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   2 srqlallgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritde 100
                 +r++++l ++g+++Lr+s v++vG+Gg+Gs ++ +La+sGv++++l+D+D++ ls lnR+  ++ +d+G++K+ +++++l +i+p+v+    +e++++ 
  CCE30807.1 103 ARNRVFLTPEGLARLRESFVVVVGCGGVGSHCVAALARSGVSNIRLIDFDQVTLSSLNRHAVATLADVGTSKVYCLQRRLIAIAPWVKFDLQQEKFEAA 201
                 588888999********************************************************************************9999999886 PP

                 CS-HHHHTT-......SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEE......CCS-ECTSS-............T..GGS.EECC CS
                 xxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxx............x..xxxxxxxx RF
        ThiF 101 tvleellesv......DlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviip......gktgcyeCld............p..sstedpte 173
                   ++ +l         D++vda+Dnie+++ + ++c+ +++p+i+a+ +g++++ + i+        ++g  + ++            p   ste++ e
  CCE30807.1 202 V-ADRILGPWengrrpDFIVDAIDNIETKVELLKYCYDNKLPVISAMGAGCKSDPTRIVVgdigasRDDGLSRATRrrlkllgitsgiPvvYSTEQSGE 299
                 4.67775555555777******************************************65122333444444444455555444444414455666666 PP

                 CCEEHHH..............HHHCT.....E-B-HHHHHHHHHHHHHHHHHHH..........TTBCGGGCCEEEE CS
                 xxxxxxx..............xxxxx.....xxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxx RF
        ThiF 174 kkvplct..............siagn.....ipaiatttavvaglaalellkll..........sgkeklenslltq 221
                  k++l+               +++ n     +p+++t++av+++ aa++++ ++          +g+ek+ + ++t+
  CCE30807.1 300 GKAELLPlpeeefqkgsvgdlGVMPNfrvriLPVLGTMPAVFGLTAANHVILSItgypldyapaKGREKMYEGIMTY 376
                 66666659999999987777744444777789*******************99955555555555555555444444 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   5.8e-08   0.00015       1      97 [.     122     244 ..     122     257 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5.8e-08
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.........................TTTCEEEEE--TTTHHHHHHHHHTT CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka.........................lgvrfeaialdaenyeavLaallke 69 
                      v+++G+G+vG+  +  lar++    +i ++d+++  l  l  +a                          +++++++++ a+  + +L +  ++
       CCE30807.1 122 VVVVGCGGVGSHCVAALARSGVS--NIRLIDFDQVTLSSLNRHAvatladvgtskvyclqrrliaiapwVKFDLQQEKFEAAVADRILGPWENG 213
                      89******************988..9*******999999998889999******************************************9888 PP

                      S..SEEEE-SSGG.GHHHHHHHHHHHT-EEE CS
  Sacchrp_dh_NADP  70 g..dlvvnlsppi.ssldvlkaCietgvhyv 97 
                      +  d++v+++ +i    ++lk+C++++  ++
       CCE30807.1 214 RrpDFIVDAIDNIeTKVELLKYCYDNKLPVI 244
                      89***********8888********998766 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   6.4e-06     0.016       1      45 [.     122     167 ..     122     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.4e-06
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEE CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevv 45 
                 ++++G+G vG++ +  L + g +++ +id d+ ++ +l ++ + ++
  CCE30807.1 122 VVVVGCGGVGSHCVAALARsGVSNIRLIDFDQVTLSSLNRHAVATL 167
                 79*****************55588***********99999887655 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.8e-05     0.047       4      91 ..     116     245 ..     114     250 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
  NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleag.akvtvvapevkeele..............................elvklaeeelekdleg....... 61 
                    +l++  v+vvG G v+ + v  l+++g  ++ +++ +    ++                               +++l++e++e+ +++       
     CCE30807.1 116 RLRESFVVVVGCGGVGSHCVAALARSGvSNIRLIDFDQVTLSSlnrhavatladvgtskvyclqrrliaiapwVKFDLQQEKFEAAVADrilgpwe 211
                    5778889********************889****99963333377777888888888888888887777775544557788887775555555655 PP

  NAD_binding_7  62 ....adlviaatddrelneriaeaakarrilvnv 91 
                         d+++ a+d+ e + ++ +++ +++++v  
     CCE30807.1 212 ngrrPDFIVDAIDNIETKVELLKYCYDNKLPVIS 245
                    555588*******************999999966 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.4e-05     0.035       3      44 ..     122     164 ..     120     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.4e-05
                     EEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHHHHCTTS- CS
  UDPG_MGDP_dh_N   3 isviGlGYvGlvtaavlaeig.hevigvDideekvdklnsgki 44 
                     ++v+G G vG  + a+la+ g  ++ ++D d+ + ++ln+  +
      CCE30807.1 122 VVVVGCGGVGSHCVAALARSGvSNIRLIDFDQVTLSSLNRHAV 164
                     78*******************78999*************9866 PP

>> Melibiase_2  Alpha galactosidase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.7e-05      0.07     193     242 ..     221     270 ..     180     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.7e-05
                  ---SSHHHHHHHHHHHHHTHHHHTTT-BTTBEEE---B-TTSSSS-HHHH CS
  Melibiase_2 193 diqdswdsvkeivdyfaenqdvlvevagpgkwndpdmliignfglsldqq 242
                  d  d+ ++  e+++y  +n+  ++++ g g   dp  +++g+ g s+d+ 
   CCE30807.1 221 DAIDNIETKVELLKYCYDNKLPVISAMGAGCKSDPTRIVVGDIGASRDDG 270
                  55566666778999********************************9985 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00013      0.32       1      40 [.     122     163 ..     122     196 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
                 EEEES-SHHHHHHHHHHHH.HTHCEEEE-SCH.HHHHHHHHC CS
        ApbA   1 iailGaGaiGsllaakLak.agadvtlilrsr.rlealkknG 40 
                 ++++G+G++Gs + a La+    ++ li+ ++  l +l+++ 
  CCE30807.1 122 VVVVGCGGVGSHCVAALARsGVSNIRLIDFDQvTLSSLNRHA 163
                 689****************55555999999888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3729.18
//
Query:       CCE30808.1  [L=668]
Description: uncharacterized protein CPUR_04657 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4836.51
//
Query:       CCE30809.1  [L=431]
Description: uncharacterized protein CPUR_04658 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3293.01
//
Query:       CCE30810.1  [L=407]
Description: uncharacterized protein CPUR_04659 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-26   89.4   0.3    1.7e-25   88.6   0.3    1.4  1  Atg29_N   Atg29 N-terminal domain


Domain annotation for each model (and alignments):
>> Atg29_N  Atg29 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.3   9.3e-30   1.7e-25       1      54 []       6      58 ..       6      58 .. 0.97

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 9.3e-30
     Atg29_N  1 ytVfiRLPfpRgdFvDPPpveWdaekdeaLWkilskaskkkeiDWkelaeefev 54
                y+V+iR+P+pRgdFvDPPpv+Wd +kdeaLW+ils+ +++k+iDW+++a++f v
  CCE30810.1  6 YIVYIRVPIPRGDFVDPPPVHWDPAKDEALWEILSG-AAQKQIDWSQVATQFGV 58
                89**********************************.888************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3104.38
//
Query:       CCE30811.1  [L=412]
Description: uncharacterized protein CPUR_04660 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-11   44.1   0.4    7.5e-11   42.9   0.4    1.6  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.4   4.2e-15   7.5e-11       1     203 [.      40     318 ..      40     319 .. 0.68

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 4.2e-15
                  EEEEEEESBTB......TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS.....HHHHHHHHHHHHHHHHTSEEEEEC-TTS......CHHHHH CS
  Metallophos   1 lrilvigDlHl......algggqlddllkllddllreekpdlvllaGDlvdrg.....dlekellellaalvkypipvylllGNHe......gfeeel 81 
                  + i+v++D Hl       +g++q +++l++++++l+ ekpd+v+l+GDlv +         +++  l+++lv+++  +  + G H+      g     
   CCE30811.1  40 FQITVFSDFHLgelsavPDGPAQDAKTLQVMREVLDYEKPDFVVLNGDLVTGEsaprrKNAHYIDHLVKPLVERNLTWGSTYGEHDhtftlhG----- 132
                  679**************9**********************************9777753333244447777777************9554441..... PP

                  HHHHHHHHHHHHHHEHH.........HCEEETSEEEEEETTEEEEEEEESECEEE.THHHHHHHHHHHSCHHHHCC............HHHHHH.... CS
  Metallophos  82 lnkygylgifsepwrsd.........aevfnnlplaslgsgslkvlllhGgspel.lvsldklgslnleleapepg............dewlkd.... 153
                   ++ +++++f++   ++         ++++  ++ a+ ++   k + +    pel l+++d+ g+++l + +  ++              w+++    
   CCE30811.1 133 GSLLRHEHRFAGSRTRKmvnlyhagtSNYYVPVYAADCVDV--KRQKC---HPELlLWFFDSRGGYDLGRSTRYGNpaplpnwvdasvVRWFQKtnqk 225
                  44444444552222222112222222333333333333333..22222...33356777777777777777766667777778888887777778877 PP

                  .HHHHTTCSEEEEEESSESS.................................CSSSCSCCHHHHH.........HHHHHTTESEEEEESSSS CS
  Metallophos 154 .lekrekadwvivlgHsply.................................rgsgylfgdeale.........dllkkygvdlvisGHtHv 203
                   +++  ++ + +++ H+p++                                 +++++l g ++ +          l   +g+   ++GH+H 
   CCE30811.1 226 lSRAAQRDIPALAFVHIPITaaaalqkdgldphknpgidhdvpvshqgmrwcnERKYDLGGLRCDKdgldtqfmtALATTPGLRGLFFGHDHG 318
                  66666666666666788888888888877777777777777777777776887555555555555588888888788***************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3349.97
//
Query:       CCE30812.1  [L=576]
Description: uncharacterized protein CPUR_04661 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.3e-123  411.8  22.3   3.9e-123  411.6  22.3    1.0  1  ATG22     Vacuole effluxer Atg22 like
    2.6e-05   23.3  41.0    0.00021   20.4   8.4    3.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  411.6  22.3  4.4e-127  3.9e-123       1     477 [.      69     535 ..      69     536 .. 0.97

  Alignments for each domain:
  == domain 1  score: 411.6 bits;  conditional E-value: 4.4e-127
       ATG22   1 ttkkellgWylyafaaevfavvavgsfvPllleqlarenGvllsdksapCsakgdeqcvvkflgieidtaSfvlytfslsvllqavvvislsglADygn 99 
                 t+k+e+++Wy+y ++a+ +a++   +f P+++++l+ + +              d +  ++f+g+++d++S+vl+++++s+++qav+++++++ AD+g+
  CCE30812.1  69 TSKWEIRSWYMYFIGANGLALF---NFGPTAFQNLLAQAAG-------------D-SKLLDFAGRQRDVNSIVLLCNGVSFAIQAVLFLVIGAYADFGT 150
                 79********************...**********997665.............2.579**************************************** PP

       ATG22 100 yrknlLlafaligslstilfllv.tpkkYllgavlyivsntcfgaslvllnsfLPllvredpelqeaeeeeeeeeessetaeeeeskelklstriSslG 197
                  r+++Ll+ +l+++ +++++++v + +++ +g  lyiv++++++ +l+++++++P l+r+++ +++a++++e++   + ++ e ++++  +++r+S+++
  CCE30812.1 151 GRRWVLLIWSLVAYGVGFGWIGVhEADQWRVGIGLYIVGLISYQLTLTYWTAAFPSLARNTQYMRDAQTAYENG---DIARPELDRRDELERSRLSNVA 246
                 ***********************999**************************************9999999999...9999999999999********* PP

       ATG22 198 laigylgailvqiisilivialgsta.....tfslrlalllvGlwWliftipaalllkkrpgpplpkglsyliygwkslgrtlkqarklkdvllfLvaw 291
                 + i+++g++++++i++ i++a++  +     ++ l++++++++  Wl+++i +++++k+rpg ++p g++++++g+ +l ++l+q+++lk+ l++Lv++
  CCE30812.1 247 FWIQSVGEVVILAIIVGIMFAVKVDEstdnnNWGLSVLITFATGCWLALSIAWFVMEKTRPGLQIPPGRNIVTAGLWQLREALTQIWHLKQSLIYLVGY 345
                 **********************988888999******************************************************************** PP

       ATG22 292 fllsdgiatvsstavlfaktelkmstaklillsivaviaavlGaflwplvsrrlnlktkktllaiivlfeliplyGllGiilgkiGlkqpwEfyvlavv 390
                 f+l d+++t++++++++++ +++++t +l++l +v ++a+ +G+ +++++++r+nl++k+++ a +v++ +++++G++G + +++G+++ wE+++++++
  CCE30812.1 346 FFLGDSLNTTVTVISTLQNDVVSYNTLTLTYLLLVGIVAQAVGIGTFWIIQERFNLSAKTMFNANMVFILILDAWGMVGNWSDRFGFHTVWEIWAYQAF 444
                 *************************************************************************************************** PP

       ATG22 391 yglvlgglssysRslfseLiPrGkEaaFFsLyaitdkgssvigplivglItDrt...gnirsafvflavLlvvplpll.llvdvergrrea 477
                 ygl++++++sys++++s+++PrG+E+ FFs ++i++k+ss++gpli ++I+D+t    n+++af+fl++L++v+ + + +++d++++++e+
  CCE30812.1 445 YGLFVCPWYSYSQIMISSVTPRGHEFLFFSVFNIIGKASSLLGPLICSAIIDATpggTNNSAAFYFLFALSLVSAVGIwVFLDLDKSTKEQ 535
                 ******************************************************9988*************99977663799******998 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6  27.1   0.00072       6.4      40     285 ..     127     415 ..      79     429 .. 0.71
   2 !   20.4   8.4   2.3e-08   0.00021      60     180 ..     402     533 ..     395     548 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.00072
       MFS_1  40 l...yalgaavaslplGrlsdr.fGrrr.vlllglllfalg.lllllfa.sslw.lllvlrvlqGlgagalfpagaaliadwfpke............. 117
                 +    ++ +av+ l++G+ +d   Grr+ +l+++l+++++g +++++ + +  w + + l ++  + + + ++   a++  ++  +             
  CCE30812.1 127 CngvSFAIQAVLFLVIGAYADFgTGRRWvLLIWSLVAYGVGfGWIGV-HeADQWrVGIGLYIVGLISYQLTLTYWTAAFPSLARNTqymrdaqtayeng 224
                 333366689************999*****************666666.565566677777777777767777777777777776666779********* PP

       MFS_1 118 .............ergraigllsagfslGa.ilgpllgglla.sslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpa 194
                              er+r   ++    s+G  ++ +++ g++    +        W ++ +i  + ++ +++ ++++++e+ ++    +p +        
  CCE30812.1 225 diarpeldrrdelERSRLSNVAFWIQSVGEvVILAIIVGIMFaVKVDestdnnnWGLSVLITFATGCWLALSIAWFVMEKTRPGLQIPPGRN------- 316
                 *****************************965556666666635555*******99888888888887777555555555555555555444....... PP

       MFS_1 195 plvp..awkallkdpvlw....illialllfffgfsg..lltllplylqevlglsglllaglllallalvgailallagrls.dr..lgrrrrlllall 282
                  +v+  +w++  +  ++w    +l++ + +ff+g s+  ++t + ++ ++v  ++   l++++l l+++v++++++ + +++  r  l+++++ + +++
  CCE30812.1 317 -IVTagLWQLREALTQIWhlkqSLIYLVGYFFLGDSLntTVTVISTLQNDVVSYN--TLTLTYLLLVGIVAQAVGIGTFWIIqERfnLSAKTMFNANMV 412
                 .33333344444444447777656666666655555566999999999*******..666667999999999998888888855555555555555555 PP

       MFS_1 283 lll 285
                 ++l
  CCE30812.1 413 FIL 415
                 544 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 2.3e-08
       MFS_1  60 Grrrvlllglllfalg.lllll..fa.....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg. 149
                 +++ ++ + +++ ++  ++ ++  ++     +++w +++  ++ Gl+ +  ++ ++++i+ ++p+ +  + ++++++   ++++lgpl+ ++++++   
  CCE30812.1 402 SAKTMFNANMVFILILdAWGMVgnWSdrfgfHTVWEIWAYQAFYGLFVCPWYSYSQIMISSVTPRGHEFLFFSVFNIIGKASSLLGPLICSAIIDATPg 500
                 5666777778888888777777776455568***************************************************************55555 PP

       MFS_1 150 ...Wravfyilaivsllafv.lfllllpeepperk 180
                     +a+fy+l ++sl+++v +  +++++ +++ k
  CCE30812.1 501 gtnNSAAFYFLFALSLVSAVgI--WVFLDLDKSTK 533
                 99999*************9944..55444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4562.21
//
Query:       CCE30813.1  [L=567]
Description: uncharacterized protein CPUR_04662 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-08   34.3  18.8      0.001   19.0   0.0    6.5  7  TPR_2     Tetratricopeptide repeat
    6.3e-06   25.8   5.5     0.0078   16.0   0.0    5.2  6  TPR_1     Tetratricopeptide repeat
    1.4e-05   24.6   4.9       0.14   11.8   0.0    5.4  6  TPR_11    TPR repeat
    0.00045   20.7   0.1    0.00045   20.7   0.1    5.3  6  TPR_19    Tetratricopeptide repeat
     0.0019   18.1   1.5        7.1    6.9   0.1    4.1  3  TPR_7     Tetratricopeptide repeat
      0.009   16.3  15.8        0.3   11.4   2.3    5.9  6  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.13   13.2  24.5       0.83   10.6   0.1    7.7  9  TPR_14    Tetratricopeptide repeat
       0.17   12.6  26.7       0.17   12.6   0.1    6.4  6  TPR_16    Tetratricopeptide repeat
        1.2    9.6   6.9         42    4.9   0.0    5.3  6  TPR_17    Tetratricopeptide repeat
          4    7.9   7.4        1.4    9.3   1.1    3.2  3  BTAD      Bacterial transcriptional activator domain


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.7e-07     0.001       1      31 [.      34      64 ..      34      67 .. 0.93
   2 ?   -2.6   0.1       4.7   8.4e+03      20      33 ..      68      81 ..      68      82 .. 0.56
   3 ?   -3.2   0.0       7.4   1.3e+04      15      22 ..     263     270 ..     262     271 .. 0.81
   4 !    8.5   0.6    0.0013       2.4       1      23 [.     380     402 ..     380     402 .. 0.92
   5 !    8.1   0.1    0.0018       3.3       8      31 ..     437     460 ..     437     462 .. 0.91
   6 !    6.4   0.1    0.0061        11       5      26 ..     477     498 ..     475     504 .. 0.88
   7 ?    0.8   0.0      0.38   6.8e+02      10      22 ..     525     537 ..     524     539 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.7e-07
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleld 31
                a+ ++n+Gl++ +  ++eeA+++f+ A+++d
  CCE30813.1 34 AQTWFNRGLVWCYGFNHEEAARCFQTAISHD 64
                678*************************987 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.7
       TPR_2 20 AleafekAleldPn 33
                A++++  A +l Pn
  CCE30813.1 68 AIAHWGLAYALGPN 81
                55566666666655 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 7.4
       TPR_2  15 gdyeeAle 22 
                 gdy++A++
  CCE30813.1 263 GDYARAVA 270
                 89999986 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0013
       TPR_2   1 aealynlGlayyklgdyeeAlea 23 
                 a ++y+ G ay++l++ e+A+++
  CCE30813.1 380 ALLHYAKGVAYAALDRVEDAHHH 402
                 678*****************876 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.0018
       TPR_2   8 GlayyklgdyeeAleafekAleld 31 
                 G++ y++g+++ A +++++A++ +
  CCE30813.1 437 GEIEYRSGHHDAAFAHLREAIQRY 460
                 7889*****************976 PP

  == domain 6  score: 6.4 bits;  conditional E-value: 0.0061
       TPR_2   5 ynlGlayyklgdyeeAleafek 26 
                 ++ G +++++g+ ++Al+ +++
  CCE30813.1 477 HAYGALLLEQGHVQDALAVYRA 498
                 57899***************86 PP

  == domain 7  score: 0.8 bits;  conditional E-value: 0.38
       TPR_2  10 ayyklgdyeeAle 22 
                 ++ klg+ +eA++
  CCE30813.1 525 CLVKLGRIAEARA 537
                 7889*******97 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.3   7.6e+03       4       8 ..      17      21 ..      15      22 .. 0.85
   2 !   16.0   0.0   4.3e-06    0.0078       1      31 [.      34      64 ..      34      67 .. 0.94
   3 ?    4.5   0.1     0.018        33       2      20 ..     381     399 ..     380     402 .. 0.88
   4 ?    2.8   0.0     0.063   1.1e+02       8      30 ..     437     459 ..     436     462 .. 0.86
   5 ?   -0.3   0.0      0.62   1.1e+03       8      25 ..     480     497 ..     480     498 .. 0.90
   6 ?   -2.5   0.0         3   5.3e+03      10      20 ..     525     535 ..     524     537 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.3
                HHHHH CS
       TPR_1  4 lynlG 8 
                +ynlG
  CCE30813.1 17 YYNLG 21
                89999 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 4.3e-06
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALeln 31
                a++++n+G++  +  +++eA  +++ A++++
  CCE30813.1 34 AQTWFNRGLVWCYGFNHEEAARCFQTAISHD 64
                789*************************998 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHTT-HHHH CS
       TPR_1   2 kalynlGnayfklgkydeA 20 
                   +y +G+ay  l + ++A
  CCE30813.1 381 LLHYAKGVAYAALDRVEDA 399
                 679************9999 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.063
                 HHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekALel 30 
                 G + ++ g +d A ++ ++A++ 
  CCE30813.1 437 GEIEYRSGHHDAAFAHLREAIQR 459
                 566788999************96 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.62
                 HHHHHHTT-HHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyye 25 
                 G++++++g  ++Al+ y+
  CCE30813.1 480 GALLLEQGHVQDALAVYR 497
                 88999*********9886 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 3
                 HHHHTT-HHHH CS
       TPR_1  10 ayfklgkydeA 20 
                 ++ klg+  eA
  CCE30813.1 525 CLVKLGRIAEA 535
                 7889****999 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.2   2.1e+03      27      35 ..      13      21 ..      12      23 .. 0.80
   2 !   11.8   0.0     8e-05      0.14      10      38 ..      50      78 ..      49      79 .. 0.94
   3 ?    1.9   0.1       0.1   1.8e+02      28      41 ..     380     393 ..     376     394 .. 0.86
   4 ?    4.2   0.0      0.02        35       1      22 [.     437     458 ..     437     459 .. 0.95
   5 ?    3.7   0.0     0.028        51       3      31 ..     482     510 ..     480     512 .. 0.85
   6 ?   -3.9   0.0       6.5   1.2e+04       5      14 ..     527     536 ..     526     537 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
      TPR_11 27 naeayynLG 35
                +++ yynLG
  CCE30813.1 13 DVDDYYNLG 21
                6677****9 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 8e-05
      TPR_11 10 yeeAieaYkkAlkldPdnaeayynLGlay 38
                 eeA  ++++A+  d + a a+++L++a+
  CCE30813.1 50 HEEAARCFQTAISHDASCAIAHWGLAYAL 78
                69************************986 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.1
      TPR_11  28 aeayynLGlayykq 41 
                 a ++y+ G+ay+++
  CCE30813.1 380 ALLHYAKGVAYAAL 393
                 789********976 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.02
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G + y  G  ++A +++++A++
  CCE30813.1 437 GEIEYRSGHHDAAFAHLREAIQ 458
                 8899****************97 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.028
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeay 31 
                 ++ eqG   +A+++Y++ l ld + ++++
  CCE30813.1 482 LLLEQGHVQDALAVYRADLGLDDSLPRVH 510
                 6889************9888888888877 PP

  == domain 6  score: -3.9 bits;  conditional E-value: 6.5
      TPR_11   5 yeqGkyeeAi 14 
                 +++G++ eA 
  CCE30813.1 527 VKLGRIAEAR 536
                 7899999995 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       2.3   4.1e+03       7      34 ..      50      77 ..      49      78 .. 0.81
   2 ?    4.7   0.2     0.024        42      14      38 ..     152     176 ..     147     177 .. 0.85
   3 ?   -1.5   0.3       2.1   3.8e+03       5      22 ..     263     280 ..     260     284 .. 0.72
   4 ?   -3.1   0.1       6.7   1.2e+04      29      44 ..     384     399 ..     380     400 .. 0.74
   5 !   10.3   0.2   0.00042      0.75       4      50 ..     443     498 ..     440     511 .. 0.78
   6 !   20.7   0.1   2.5e-07   0.00045       1      47 [.     483     538 ..     483     547 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.3
      TPR_19  7 yaeAlalleqalqedpknaearllLAea 34
                ++eA++ ++ a+++d+  a a  +LA a
  CCE30813.1 50 HEEAARCFQTAISHDASCAIAHWGLAYA 77
                7899999999999999888888888876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.024
      TPR_19  14 leqalqedpknaearllLAeallal 38 
                 + ++ +  p+++++++l+A+a+++l
  CCE30813.1 152 MGSVAARFPQHLDVAALYADAMMNL 176
                 56778899*************9875 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.1
      TPR_19   5 gdyaeAlalleqalqedp 22 
                 gdya+A+a+ + a+++d 
  CCE30813.1 263 GDYARAVAANADAMAADD 280
                 788888887777766665 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 6.7
      TPR_19  29 llLAeallalgqldeA 44 
                 ++   a+ al ++++A
  CCE30813.1 384 YAKGVAYAALDRVEDA 399
                 5556789999999988 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 0.00042
      TPR_19   4 egdyaeAlalleqalqedpk.........naearllLAeallalgqldeAealLda 50 
                 +g +++A a+l++a+q +           ++ +r ++  +ll++g++++A a+  a
  CCE30813.1 443 SGHHDAAFAHLREAIQRYDSlpfdepwgwMQPVRHAYGALLLEQGHVQDALAVYRA 498
                 7999***********99444444445577**********************98765 PP

  == domain 6  score: 20.7 bits;  conditional E-value: 2.5e-07
      TPR_19   1 llaegdyaeAlalleq..alqe.......dpknaearllLAeallalgqldeAeal 47 
                 ll++g  ++Ala +++   l++        p+n +a+ ++ e+l++lg+++eA+al
  CCE30813.1 483 LLEQGHVQDALAVYRAdlGLDDslprvhrHPNNVWALHGYHECLVKLGRIAEARAL 538
                 79**************7534446677777*************************97 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0067        12       1      31 [.      36      64 ..      36      68 .. 0.86
   2 ?    0.4   0.0      0.47   8.4e+02      12      29 ..     262     277 ..     257     284 .. 0.78
   3 !    6.9   0.1     0.004       7.1       7      31 ..     481     505 ..     477     509 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0067
       TPR_7  1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31
                +++n + +++   ++eeA+++++   a+  d
  CCE30813.1 36 TWFNRGLVWCYGFNHEEAARCFQT--AISHD 64
                6789999****************9..77655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.47
       TPR_7  12 lGdyeeAielyeqsLalt 29 
                 +Gdy++A+  +    a++
  CCE30813.1 262 VGDYARAVAANAD--AMA 277
                 69******98877..554 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.004
       TPR_7   7 rlysrlGdyeeAielyeqsLaltkd 31 
                  l  ++G+ ++A+ +y++ L+l+++
  CCE30813.1 481 ALLLEQGHVQDALAVYRADLGLDDS 505
                 67889*************9998876 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.038        68      44      73 ..      33      62 ..      28      66 .. 0.77
   2 ?   -0.2   0.0      0.72   1.3e+03      27      51 ..     203     224 ..     198     224 .. 0.77
   3 ?   -2.8   0.1       4.6   8.2e+03      59      75 ..     263     279 ..     261     281 .. 0.77
   4 ?   -1.3   0.1       1.5   2.7e+03       3      22 ..     380     399 ..     377     402 .. 0.58
   5 !   11.4   2.3   0.00017       0.3      10      69 ..     437     497 ..     430     500 .. 0.92
   6 !    5.9   1.8    0.0088        16       8      67 ..     478     538 ..     475     549 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.038
      TPR_12 44 tattlrnLgrl.yralgryeeAlelleeala 73
                +a+t +n g + ++ + ++eeA + ++ a+ 
  CCE30813.1 33 VAQTWFNRGLVwCYGF-NHEEAARCFQTAIS 62
                5778888888877777.88888888888865 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.72
      TPR_12  27 ekaleiarrllGpdhpltattlrnL 51 
                 ++al ++    G++hp+++  ++ L
  CCE30813.1 203 DEALSQQ---GGDQHPGLLHLYIHL 224
                 5565555...9*******9999865 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 4.6
      TPR_12  59 gryeeAlelleealaia 75 
                 g+y+ A+++  +a+a++
  CCE30813.1 263 GDYARAVAANADAMAAD 279
                 88999988888888765 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.5
      TPR_12   3 atalnnlaavlrrlgrydeA 22 
                 a +++  ++++++l r ++A
  CCE30813.1 380 ALLHYAKGVAYAALDRVEDA 399
                 44444566666666666666 PP

  == domain 5  score: 11.4 bits;  conditional E-value: 0.00017
      TPR_12  10 aavlrrlgrydeAlellekaleiarrl.lGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 +++++r g +d A+++l++a++++ +l +++ + +   +++++g l++++g+ ++Al+ ++
  CCE30813.1 437 GEIEYRSGHHDAAFAHLREAIQRYDSLpFDEPWGWMQPVRHAYGALLLEQGHVQDALAVYR 497
                 7889999999**************9999999999999999999999999999999999886 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0088
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrl.lGpdhpltattlrnLgrlyralgryeeAlel 67 
                  ++a+l+++g  ++Al+ +++ l +  +l   + hp+ +++l+++ +++ +lgr +eA++l
  CCE30813.1 478 AYGALLLEQGHVQDALAVYRADLGLDDSLpRVHRHPNNVWALHGYHECLVKLGRIAEARAL 538
                 5788888888888888888888888888888899999999999999999999999999986 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.069   1.2e+02      16      42 ..      49      75 ..      41      77 .. 0.85
   2 ?   -2.7   0.1       9.1   1.6e+04      10      29 ..     108     127 ..      98     135 .. 0.57
   3 ?   -0.1   0.2       1.3   2.3e+03      13      43 ..     144     171 ..     137     172 .. 0.67
   4 ?    1.1   0.0      0.52   9.4e+02      16      35 ..     194     213 ..     190     227 .. 0.68
   5 ?    1.6   0.1      0.36   6.5e+02       3      20 ..     346     363 ..     343     366 .. 0.82
   6 ?   -2.1   0.2       5.5     1e+04       4      20 ..     383     399 ..     380     401 .. 0.77
   7 ?   10.6   0.1   0.00046      0.83       8      31 ..     437     460 ..     430     473 .. 0.82
   8 ?    7.0   0.3    0.0069        12       4      26 ..     476     498 ..     474     525 .. 0.80
   9 ?   -1.4   0.0       3.5   6.3e+03      14      23 ..     529     538 ..     516     549 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.069
      TPR_14 16 dpdeAiallrralalaPddaeawllla 42
                +++eA+++++ a++++ + a a+  la
  CCE30813.1 49 NHEEAARCFQTAISHDASCAIAHWGLA 75
                79*************998887776555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 9.1
      TPR_14  10 allalGdpdeAiallrrala 29 
                 a +  G+    +++l +al+
  CCE30813.1 108 AQALCGNASPVEKALIEALR 127
                 33444555555666666655 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.3
      TPR_14  13 alGdpdeAiallrralalaPddaeawlllaq 43 
                  ++++++A+    ++   +P+++++  l+a+
  CCE30813.1 144 WNREYADAMGSVAAR---FPQHLDVAALYAD 171
                 566777777766666...8888877777775 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.52
      TPR_14  16 dpdeAiallrralalaPdda 35 
                 ++++  ++l++al+++ +d+
  CCE30813.1 194 RTEQVKRVLDEALSQQGGDQ 213
                 6788889*******765442 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.36
      TPR_14   3 allalaeallalGdpdeA 20 
                  l+++++al + G++d+ 
  CCE30813.1 346 FLAMRVHALIRFGRWDDI 363
                 46789***********86 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 5.5
      TPR_14   4 llalaeallalGdpdeA 20 
                 ++a + a++al++ ++A
  CCE30813.1 383 HYAKGVAYAALDRVEDA 399
                 57777889999888887 PP

  == domain 7  score: 10.6 bits;  conditional E-value: 0.00046
      TPR_14   8 aeallalGdpdeAiallrralala 31 
                 +e+++++G +d+A a+lr+a++++
  CCE30813.1 437 GEIEYRSGHHDAAFAHLREAIQRY 460
                 78899****************987 PP

  == domain 8  score: 7.0 bits;  conditional E-value: 0.0069
      TPR_14   4 llalaeallalGdpdeAiallrr 26 
                 + a++++ll++G  ++A+a++r+
  CCE30813.1 476 RHAYGALLLEQGHVQDALAVYRA 498
                 6799*****************98 PP

  == domain 9  score: -1.4 bits;  conditional E-value: 3.5
      TPR_14  14 lGdpdeAial 23 
                 lG+ +eA+al
  CCE30813.1 529 LGRIAEARAL 538
                 5555665554 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   9.5e-05      0.17      13      44 ..      50      78 ..      49      78 .. 0.94
   2 ?   -2.5   0.4       4.7   8.5e+03      18      43 ..     150     172 ..     145     174 .. 0.63
   3 ?   -1.0   0.6       1.7     3e+03      48      59 ..     263     274 ..     261     281 .. 0.59
   4 ?    1.6   0.1      0.25   4.4e+02      34      53 ..     380     399 ..     369     400 .. 0.89
   5 ?    4.1   0.1     0.041        73      41      65 ..     437     461 ..     433     467 .. 0.77
   6 ?    9.0   1.5    0.0012       2.2       5      56 ..     481     538 ..     478     546 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.5e-05
      TPR_16 13 yddAaaaleaalkrdpssPdaaeAllllgdaa 44
                 ++Aa+ +++a+  d     +a A+++l+ a+
  CCE30813.1 50 HEEAARCFQTAISHD---ASCAIAHWGLAYAL 78
                699************...***********986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.7
      TPR_16  18 aaleaalkrdpssPdaaeAllllgda 43 
                  a   + +r+   P++ + + l++da
  CCE30813.1 150 DAMGSVAARF---PQHLDVAALYADA 172
                 4446677888...8776666666665 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.7
      TPR_16  48 grlaeAaalyra 59 
                 g++a+A+a+ + 
  CCE30813.1 263 GDYARAVAANAD 274
                 666666666555 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.25
      TPR_16  34 aeAllllgdaalrqgrlaeA 53 
                 a  ++++g+a++++ r+++A
  CCE30813.1 380 ALLHYAKGVAYAALDRVEDA 399
                 6679**********999998 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.041
      TPR_16  41 gdaalrqgrlaeAaalyraalraap 65 
                 g++ +r g +++A a +r+a++ + 
  CCE30813.1 437 GEIEYRSGHHDAAFAHLREAIQRYD 461
                 7888999999999999999986554 PP

  == domain 6  score: 9.0 bits;  conditional E-value: 0.0012
      TPR_16   5 raalragdyddAaaaleaalkrdpssPd......aaeAllllgdaalrqgrlaeAaal 56 
                  ++l++g+ +dA+a+++a l +d s P+      ++ Al ++ +++ ++gr aeA+al
  CCE30813.1 481 ALLLEQGHVQDALAVYRADLGLDDSLPRvhrhpnNVWALHGYHECLVKLGRIAEARAL 538
                 57999***********999999988888777766666666666666666777777655 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.3   2.4e+03      11      21 ..      12      22 ..      11      22 .. 0.89
   2 ?    0.0   0.0       0.8   1.4e+03      13      25 ..      34      49 ..      30      62 .. 0.73
   3 ?   -3.4   0.0        10   1.8e+04       9      23 ..     159     173 ..     156     176 .. 0.59
   4 ?   -0.6   0.1       1.2   2.2e+03      14      33 ..     381     400 ..     380     401 .. 0.86
   5 ?    2.4   0.0      0.14   2.4e+02      15      33 ..     475     493 ..     473     494 .. 0.89
   6 ?    4.9   0.0     0.023        42       8      33 ..     511     536 ..     509     537 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.3
      TPR_17 11 nnadaynnLAe 21
                n++d y+nL++
  CCE30813.1 12 NDVDDYYNLGT 22
                89999****96 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.8
      TPR_17 13 adaynnLAelll...k 25
                a  ++n++ +++   +
  CCE30813.1 34 AQTWFNRGLVWCygfN 49
                678*****99986643 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 10
      TPR_17   9 dPnnadaynnLAell 23 
                  P + d+  ++A ++
  CCE30813.1 159 FPQHLDVAALYADAM 173
                 566666666666554 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.2
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                  +++ ++++++ + + ++A+
  CCE30813.1 381 LLHYAKGVAYAALDRVEDAH 400
                 57999******999999886 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.14
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 + + ++ lll++G  ++A+
  CCE30813.1 475 VRHAYGALLLEQGHVQDAL 493
                 7899**********99997 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.023
      TPR_17   8 ldPnnadaynnLAelllknGdlmtAr 33 
                 ++Pnn++a++ + e+l k+G+ ++Ar
  CCE30813.1 511 RHPNNVWALHGYHECLVKLGRIAEAR 536
                 69**********99999999999998 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.3   2.3e+03      60     109 ..      97     112 ..      50     127 .. 0.60
   2 ?   -0.1   0.0      0.62   1.1e+03      61      82 ..     343     364 ..     312     368 .. 0.72
   3 ?    9.3   1.1    0.0008       1.4      12     116 ..     436     536 ..     428     550 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT CS
        BTAD  60 lrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlars 109
                                                     Er+hr++ +A a +
  CCE30813.1  97 T----------------------------------AERTHRAVEQAQALC 112
                 2..................................233333333333333 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHHHHTT-HHHHH CS
        BTAD  61 rlealealaeaelrlGraeeal 82 
                   + l+ ++ a++r+Gr++++l
  CCE30813.1 343 LEAFLAMRVHALIRFGRWDDIL 364
                 4455677888889999998876 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0008
                 HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT CS
        BTAD  12 agraalaagdpeeaaelleaAlalwrGpaladleagewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsG 110
                 +g+ + + g +++a ++l++A++ ++  ++++    +w +++ +r    +l   + +++  l++ ra+  l++    v+ hP + ++     ++l ++G
  CCE30813.1 436 DGEIEYRSGHHDAAFAHLREAIQRYDSLPFDE----PWGWMQPVRHAYGALLLEQGHVQDALAVYRADLGLDDSLPRVHRHPNNVWALHGYHECLVKLG 530
                 57778899*******************99999....677777777777777777999999*************************************** PP

                 -HHHHH CS
        BTAD 111 rqaeAL 116
                 r aeA 
  CCE30813.1 531 RIAEAR 536
                 ****94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4355.90
//
Query:       CCE30814.1  [L=330]
Description: uncharacterized protein CPUR_04663 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2605.04
//
Query:       CCE30815.1  [L=241]
Description: uncharacterized protein CPUR_04664 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-08   32.5   0.0    2.2e-07   30.7   0.0    1.8  1  FTA2      Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.2e-11   2.2e-07      25     126 ..       2     133 ..       1     210 [. 0.66

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.2e-11
        FTA2  25 efleyLgkglhsiVlkvkirgkeYALKlFrfleaeele........................eaeedlkiprealkelasysdp............... 84 
                 +f + Lg g +++V+kv+i+ k+YALK+F + +++ +                         +                                    
  CCE30815.1   2 RFTKRLGWGEDGMVWKVRIDSKTYALKVFWDTQQRAQCywafrtecenaslfakmrfaiensS--------------------Dtiwlhpdpkthhegl 80 
                 6999*************************8886655447777665555544444444443322....................0233333335555555 PP

        FTA2  85 .....fasECRAfgRLkeag.redlAv.....kcyGYllLskeqekklsrkfd 126
                      f+ E R+  R +++  + +++      +cyG++ +s ++  ++ + ++
  CCE30815.1  81 ynlhaFSDEGRSRQRYRDMPgAVTYSTaprlrECYGWMSISGQDVLTMYKALR 133
                 55555888888888888886666665433333588888888866555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1890.44
//
Query:       CCE30816.1  [L=4]
Description: uncharacterized protein CPUR_04665 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                         2  (0.000111551); expected 358.6 (0.02)
Passed bias filter:                        0  (0); expected 358.6 (0.02)
Passed Vit filter:                         0  (0); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.21s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 34.78
//
Query:       CCE30817.1  [L=856]
Description: related to aphidicolan-16beta-ol synthase (diterpenoide synthase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.098   11.7   0.1        2.5    7.1   0.0    2.8  3  SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain


Domain annotation for each model (and alignments):
>> SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00014       2.5      49      98 ..     191     240 ..     167     243 .. 0.85
   2 ?   -1.6   0.0     0.065   1.2e+03      54      68 ..     354     368 ..     346     384 .. 0.65
   3 ?    0.5   0.0     0.014   2.5e+02     255     272 ..     540     557 ..     534     563 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00014
  SQHop_cyclase_N  49 kiakylrsqqredGgWelypggpgdlsttveaYlALkllGdspdapalar 98 
                       ++  lr++ +++Gg   +  +++d+  t +a lALkl G + + + +++
       CCE30817.1 191 GLVGILRASLEDEGGIIGFAPHTADVDDTAKALLALKLSGQHVSPDTMIK 240
                      566678888899999999999*******************9998888875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.065
  SQHop_cyclase_N  54 lrsqqredGgWelyp 68 
                      ++  q+edG+W   +
       CCE30817.1 354 IMLDQSEDGSWDESQ 368
                      555677777776544 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.014
  SQHop_cyclase_N 255 amvnsvlaLrllgydldh 272
                      ++++ +++L+llgy++d+
       CCE30817.1 540 SWMYDMMMLSLLGYQTDE 557
                      799***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 6309.00
//
Query:       CCE30818.1  [L=317]
Description: probable cytochrome P450 monooxygenase (lovA) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-35  121.2   0.1    6.3e-35  120.8   0.1    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.1   3.5e-39   6.3e-35     153     449 ..       8     310 ..       2     316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 3.5e-39
                 HHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC......SCSSCSHHHHH CS
        p450 153 igsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsa......kksrrdfldal 245
                 +++i++g ++   ++e+ +++ k   + +s  +++  ++  + ++l  ++ + +rkl++ ++ +  ++++l+e rre  +s+              da+
  CCE30818.1   8 SSKIFLGDQLC--RNEEWLQITKNYTTCFSTAATKLRMFPRHLRILAHWFLPECRKLRQERDNARRIIMPLLERRRELRKSEiaagksP---TYHNDAM 101
                 56677777644..4444556666666666666666666666777555555555666666667777788888888888777778875441...4344443 PP

                 HHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC.CTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEE CS
        p450 246 llakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevl.gdkreptyddlqklpyldavikEtLRlhpvvplllp 343
                   a++e +   +  d  + + +l ll  +++Tt   l+ +++eL ++Pe  + lr Ei++ l +d    +   + ++++ld +ikE++Rl p + l++ 
  CCE30818.1 102 DWAEQEASAAGTTFDPVIFQLTLSLL--AIHTTFDLLQQTMIELGQRPEFLQPLRDEIQQSLlKD--GWKKTSIFNMKLLDSAIKEAQRLKPSSILTMR 196
                 33332222222344555555555555..59********************************666..699***************************** PP

                 EESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS........CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHE CS
        p450 344 Revtkdvvirg.ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg........nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnF 433
                 R+v++d+++++  +++kGt+  v  + l   p+++++P++++p RF d +         +  + s  +l+FG G ++C+G+ +A  e+k++l ++L ++
  CCE30818.1 197 RYVLEDLQLSNgLVVKKGTRLNVDNQRLVD-PSIYDHPDVYNPYRFYDMRSkpgkdhiaQLVSTSPDHLGFGHGEHSCPGRFFAANEIKVALCHILVKY 294
                 *********999*************99975.******************999*****99555899********************************** PP

                 EEEESTSTSGGEEESS CS
        p450 434 evelqpetdpppilek 449
                 +++l p t+  p  ++
  CCE30818.1 295 DWKLAPFTNTDPETKG 310
                 ******9998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2211.61
//
Query:       CCE30819.1  [L=413]
Description: probable cytochrome P450 monooxygenase (lovA) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-29  103.1   0.0    1.9e-29  102.7   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   1.1e-33   1.9e-29     219     449 ..     160     391 ..     134     404 .. 0.85

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 1.1e-33
                 HHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHH CS
        p450 219 lldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptydd 317
                 +ld + +++ +   ++  + +d +d l ++    +++ kl+ +   a++    +a + Tt   ++ +++ +a nPe+ e lr+Ei +vlg +   +   
  CCE30819.1 160 VLDSIYTNNAARRGER-FECNDAIDWLEQTA---QDK-KLTYDPACAQLSLSVAALHSTTDFFTQ-VMLDIACNPELVEPLRKEIISVLGVA-GWSKHS 251
                 4555555555555555.56778888777764...665.899999999987777777777766555.56699******************996.69**** PP

                 CCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTS........CTESSCTT--TTEE CS
        p450 318 lqklpyldavikEtLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekg........nskrksfaflPFGa 407
                 l +l+++d v+kE++Rl p++  ++ R++t+++++ +  ++pk+t  +v+++  h d   +++P++Fd  RF + ++        +  + s  +++FG 
  CCE30819.1 252 LYQLKLMDSVLKESQRLKPIAIASMRRMTTENIKLADgTVLPKNTLTLVSAHK-HWDAGSYEEPHRFDGYRFYNLRQvpgkenvsQLVSVSPDHMGFGY 349
                 ***********************************999*******99999865.999******************999**99998555899******** PP

                 GGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESS CS
        p450 408 GpRnCiGerlArmelklflatlLqnFevelqpetdpppilek 449
                 G ++C+G+ +A  e+kl+l ++L ++++ l ++td++p+  +
  CCE30819.1 350 GLHACPGRFFASEEIKLVLCHILLKYDFRLVEGTDIEPRKFG 391
                 ************************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3033.91
//
Query:       CCE30820.1  [L=136]
Description: uncharacterized protein CPUR_04669 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-38  130.6   0.0    8.3e-38  130.4   0.0    1.0  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase
  ------ inclusion threshold ------
      0.022   14.3   0.0       0.03   13.8   0.0    1.2  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.0   9.3e-42   8.3e-38      64     199 ..       4     133 ..       1     135 [. 0.97

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 9.3e-42
       RVT_2  64 rLllalaaeeelvvhqldvdsafLnaeldeevyvkqPpGfeidreeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegkli 162
                 + + a+aa  +l +hq+dv++a+L + +++ vyv qP G e     ++v+ Ln++lyGlkq+p++W+e+++  L+ lgf++ ++  G++++g    +l+
  CCE30820.1   4 KAIFAIAAALDLELHQMDVKTAYLYGLINDLVYVEQPEGLEDG--LGRVCLLNRALYGLKQSPRIWYETLSAYLATLGFKPLTSDLGVFFKG----NLY 96 
                 6789***********************************9877..9*********************************************9....9** PP

       RVT_2 163 valyvddlliagsdikiledvkkelakkfklkdlgkv 199
                 +a+yvddlliag+++ ++  +k  l+k+f+++dlg++
  CCE30820.1  97 IAIYVDDLLIAGPSPDEIATLKAALSKRFEMEDLGEL 133
                 **********************************986 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.3e-06      0.03     138     191 ..      71     125 ..      51     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.3e-06
                 THHHHHHHHHHHHHTT-T.......TEEECTTEEEEEESSHHHHHHHHHHHHHHH CS
       RVT_1 138 lSPllfnlfmnellrelrkra.kgvtllrYaDDililskskeelqelleaveewl 191
                 lS +l++l + +l  +l   +  +++++ Y+DD+li+  s++e+ +l  a+++++
  CCE30820.1  71 LSAYLATLGFKPLTSDLGVFFkGNLYIAIYVDDLLIAGPSPDEIATLKAALSKRF 125
                 7888888888888888888778889999***************888877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1045.38
//
Query:       CCE30821.1  [L=183]
Description: uncharacterized protein CPUR_04670 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1305.40
//
Query:       CCE30822.1  [L=113]
Description: probable synaptobrevin (v-SNARE) homolog [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-32  109.5   1.0    5.8e-32  109.4   1.0    1.0  1  Synaptobrevin  Synaptobrevin
  ------ inclusion threshold ------
       0.14   12.3   0.0       0.15   12.1   0.0    1.0  1  MCU            Mitochondrial calcium uniporter
          4    7.7   6.6        2.2    8.6   3.2    2.2  3  Chi-conotoxin  chi-Conotoxin or t superfamily


Domain annotation for each model (and alignments):
>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   1.0   9.6e-36   5.8e-32       2      88 ..      23     109 ..      22     110 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 9.6e-36
                    XXHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin   2 ndklakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlililiiiivic 88 
                    +d+++ki+++++++++i+++Ni+k+ +rg++ld L+dkt+nL+ saq F++ a++++++mwwk+mk++i++++ ++il+liiii+++
     CCE30822.1  23 ADRVKKIQEDINDTVGILRDNINKANDRGQRLDALQDKTDNLAVSAQGFRRGANRVRKQMWWKDMKMRICIVVGIIILLLIIIIPSV 109
                    699********************************************************************************9875 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.6e-05      0.15      32     101 ..      23      92 ..      12     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
                 XXXXXXXXXXXX-SSSSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCCCGGGCHHHHGGGHHHHHHH CS
         MCU  32 llrvkqlvkalesalnveeeqlkkereleekleelreelepleekkeeidekAerrtrrllwagLallav 101
                  +rvk++ +++++++ + + + +k ++  ++l++l+++ ++l    + +++ A+r +++++w  + + ++
  CCE30822.1  23 ADRVKKIQEDINDTVGILRDNINKANDRGQRLDALQDKTDNLAVSAQGFRRGANRVRKQMWWKDMKMRIC 92 
                 68999999*******9999*******************************************98876543 PP

>> Chi-conotoxin  chi-Conotoxin or t superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.41   2.4e+03      36      39 ..      41      44 ..      17      70 .. 0.61
   2 ?   -0.6   0.0      0.28   1.7e+03      25      49 ..      60      85 ..      52      88 .. 0.66
   3 ?    8.6   3.2   0.00036       2.2       3      22 ..      92     111 ..      89     113 .] 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.41
  Chi-conotoxin 36 hdna 39
                   +dn+
     CCE30822.1 41 RDNI 44
                   3443 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.28
  Chi-conotoxin 25 ktkd.dvplaSfhdnakrtlqrlwnk 49
                   kt++  v+ + f+  a+r  +++w k
     CCE30822.1 60 KTDNlAVSAQGFRRGANRVRKQMWWK 85
                   45432456667888888887777755 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00036
  Chi-conotoxin   3 clpVFvILLLLiaSaPsvda 22 
                    c+ V +I+LLLi   Psv a
     CCE30822.1  92 CIVVGIIILLLIIIIPSVLA 111
                    999**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1078  (0.0601261); expected 358.6 (0.02)
Passed bias filter:                      744  (0.041497); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 782.56
//
Query:       CCE30823.1  [L=587]
Description: uncharacterized protein CPUR_04672 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.3e-156  520.0  12.7   5.3e-156  519.7  12.7    1.1  1  Glyco_hydro_76  Glycosyl hydrolase family 76


Domain annotation for each model (and alignments):
>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  519.7  12.7  2.9e-160  5.3e-156       1     365 [.      38     403 ..      38     404 .. 0.98

  Alignments for each domain:
  == domain 1  score: 519.7 bits;  conditional E-value: 2.9e-160
                     SXHHHHHHHHHHHHHHCETTECCTCTCBSCES-GHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHCCCTCEE-SSSTTCTCSSEHHHHHHHHHH CS
  Glyco_hydro_76   1 siksaaatiakgllkyYkgnesggtpgnlpdpyywWeagalfgalidywrltgdstyndlitqallaqagenydympanqsrtegnDDqafwgla 95 
                     si s a++i+++l+ yY gn++ggtpg lp+pyywWeaga++g+lidyw++tgd++yndl+ q+ll+qag++ydymp+nq+ tegnDDq+fwgla
      CCE30823.1  38 SIVSVAKQITADLVAYYSGNKPGGTPGLLPAPYYWWEAGAFLGSLIDYWYYTGDDQYNDLVGQGLLFQAGNDYDYMPRNQTLTEGNDDQGFWGLA 132
                     67899****************************************************************************************** PP

                     HHHHHHH......H--HHHHHHHHHHHHHHHHCB-SCSCCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHH CS
  Glyco_hydro_76  96 amtaaernfpep.tdepswLalAqavfntqasrwdeetcgGGlrWqiftwnsgydyknsisngplfqlaarLarytgnetYlewAekvwdWvedv 189
                     +mtaae nfpe  +d+p+wL lAqavfntqa+rwd+e+c+GGlrWqif+wn+gydyknsis +++f l+arLa +tgn++Y ewA+++wdW++dv
      CCE30823.1 133 VMTAAEYNFPEAsSDQPQWLGLAQAVFNTQAARWDSENCNGGLRWQIFKWNQGYDYKNSISQACFFALGARLALFTGNSSYGEWADRTWDWMVDV 227
                     *********************************************************************************************** PP

                     SCSBTTTS-B-SEEETTTCCEEEE---HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCEEC.TTEEEEEE-TTSTTCCTTHHHHHHH CS
  Glyco_hydro_76 190 gliddedwlvyDgasvednctdinklqwtYnqGtylsgaaylynaTgdekWldrvkgllnatlstffpd.gnilyevacepsekcnnDqrsFkgi 283
                     g+i d+ w+v Dga++ +nc+d+ ++q+tYn+G ++ gaa +yn+T++  W+dr++gll++++ +f+   +ni++evacep ++cn Dq+sFk++
      CCE30823.1 228 GYI-DKYWRVIDGAHIGSNCSDHVPYQFTYNAGGFILGAAAMYNYTENPIWKDRLDGLLKGSKVFFTGPeKNIMTEVACEPVDRCNMDQQSFKAY 321
                     ***.*********************************************************955555559***********999*********** PP

                     HHHHHHHHH..SHHHHHHHHHHHHHHHHHHHTTTB...TTTSB-TTTTTSSCCHHHHHHHHCCHHH............HHHH CS
  Glyco_hydro_76 284 larwlaltaqlapetadtiepllrasaeaaakscsggsdgttcglkwlkgtwdgdaglgeqmsaleviqallveekkaplta 365
                     ++rw+a+++++ap t+d ++p+lrasa aaak+c gg+++++cglkw ++++dg++g+g+qm+a+ev  a +++++++p ta
      CCE30823.1 322 VSRWFAAITKWAPHTYDYVMPYLRASAVAAAKQCVGGDNKRMCGLKWNQDKYDGSTGVGQQMAAMEVTLACMIKDRPPPFTA 403
                     *****************************************************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4347.06
//
Query:       CCE30824.1  [L=215]
Description: uncharacterized protein CPUR_04673 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.6   0.1       0.21   11.7   0.1    1.4  1  Nup54     Nucleoporin complex subunit 54


Domain annotation for each model (and alignments):
>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.1e-05      0.21      22      71 ..     148     197 ..     127     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.1e-05
                 TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Nup54  22 klvPvpvkGFedLakRvkaQqkevaqhrerlkeisdrleeleqkhqlets 71 
                     v ++ F++La+R    +++++++   +++i++ l++l++++q  + 
  CCE30824.1 148 DTTVVSARVFKALAERPHHREEAIQLCSVSISDINKALDKLAESKQPMAV 197
                 456688999*********************************87765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1581.75
//
Query:       CCE30825.1  [L=285]
Description: uncharacterized protein CPUR_04674 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0083   15.0   0.0      0.012   14.5   0.0    1.1  1  Transposase_mut  Transposase, Mutator family


Domain annotation for each model (and alignments):
>> Transposase_mut  Transposase, Mutator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   6.6e-07     0.012     252     317 ..      36     102 ..      29     131 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.6e-07
  Transposase_mut 252 vQrCrvHllrnllakvpkkkadkvaealksiykaedaeearealeefleklgk.kypkvaelldeaa 317
                        +C+vH+ rn+ ++v   +++k+a++++ + +a+d +e  + +e ++++  + k  + a++ ++++
       CCE30825.1  36 IRTCMVHFGRNIDQAVGPTDTSKFAKRMHELATARDRDEYMAIIEGLMAQTERpKVARWAKHKRQGW 102
                      579******************************************9999776666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2080.17
//
Query:       CCE30826.1  [L=153]
Description: uncharacterized protein CPUR_04675 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0038   16.6   6.2     0.0046   16.3   6.2    1.1  1  HemX      HemX, putative uroporphyrinogen-III C-methyltransfe
     0.0076   14.8   0.3     0.0088   14.6   0.3    1.0  1  DUF3160   Protein of unknown function (DUF3160)
  ------ inclusion threshold ------
      0.077   12.9   0.3       0.28   11.1   0.1    2.1  3  JSRP      Junctional sarcoplasmic reticulum protein
       0.11   12.0   3.5      0.092   12.2   2.5    1.4  2  TrwC      TrwC relaxase
       0.15   11.8   0.9       0.27   11.0   0.5    1.6  2  GPW_gp25  Gene 25-like lysozyme
       0.56   10.9   5.8       0.28   11.9   0.8    2.4  3  DUF4404   Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   6.2   1.5e-06    0.0046      44     117 ..       4      81 ..       1      91 [. 0.81

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.5e-06
        HemX  44 laaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlskvsga...erkdWlLae..AdfLlk 117
                 l al++q+++ + +++ +q ++e l++++++l+++e+  eq+++ql+el++++++++ga   +r+d +  e  ++fL++
  CCE30826.1   4 LDALDAQSQA-QLHAAIQQAVQEGLAATEQRLAQSEAVREQQAAQLAELNSAFQQLHGAsraSRDDMRAGEpfTEFLVR 81 
                 6778877777.7788888899999**********************************955555665655544566665 PP

>> DUF3160  Protein of unknown function (DUF3160)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   2.9e-06    0.0088     471     551 ..      25     105 ..      14     126 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.9e-06
     DUF3160 471 alteltaeglkerelldeeskeklekleellerLkeisekelaneelteeeyefirsigeeleseleevderseeedekkk 551
                 +  + t++ l+++e+++e++ ++l++l+++ ++L+  s+    + +  e  +ef+ ++++++es+l+++d+  +   +k +
  CCE30826.1  25 EGLAATEQRLAQSEAVREQQAAQLAELNSAFQQLHGASRASRDDMRAGEPFTEFLVRFDNRFESQLAKADRLGNADGDKIE 105
                 45567889999*****************************************************88888876655554443 PP

>> JSRP  Junctional sarcoplasmic reticulum protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   3.6e+03      46      46 ..      31      31 ..       6      49 .. 0.54
   2 ?   11.1   0.1   9.5e-05      0.28      20      40 ..      48      68 ..      44      81 .. 0.82
   3 ?   -1.7   0.0      0.95   2.8e+03       4      20 ..     121     137 ..     107     138 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
        JSRP 46 e 46
                e
  CCE30826.1 31 E 31
                2 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 9.5e-05
        JSRP 20 vavLgsgfqllhdavrGeaev 40
                +a L s+fq lh+a+r++++ 
  CCE30826.1 48 LAELNSAFQQLHGASRASRDD 68
                6779*************9985 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.95
        JSRP   4 PWedvtLNkCLvlAslv 20 
                 P  +v++   L++A +v
  CCE30826.1 121 PVINVSPSESLAVAAVV 137
                 55566666667777665 PP

>> TrwC  TrwC relaxase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.5   3.1e-05     0.092      99     156 ..       8      64 ..       1      75 [. 0.76
   2 ?   -3.0   0.0       1.3     4e+03      83      99 ..     123     139 ..      82     147 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.1e-05
        TrwC  99 dderraaieaahdaAvkaalalleeeaaftRvgkeggqeqvktgglvaaafrHetsRa 156
                 d++ +a++ aa ++Av++ la  e+++a+  +  +++q+ + ++   a +  H  sRa
  CCE30826.1   8 DAQSQAQLHAAIQQAVQEGLAATEQRLAQSEAV-REQQAAQLAELNSAFQQLHGASRA 64 
                 4566699**********************9888.555555555555667778999997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
        TrwC  83 ltfsaP.KSvSllalvgd 99 
                 + +s P  S+ ++a+v+d
  CCE30826.1 123 INVS-PsESLAVAAVVND 139
                 2233.3355555555555 PP

>> GPW_gp25  Gene 25-like lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   8.9e-05      0.27      34      73 ..       5      45 ..       1      63 [. 0.78
   2 ?   -1.3   0.0      0.64   1.9e+03      43      65 ..      67      89 ..      51     118 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.9e-05
                HHHHCS--.CHHHHHHHHHHHHHHHH-TTEEEEEEEE.... CS
    GPW_gp25 34 allfasls.edreriareireailrfEpRirlvsvevevee 73
                + l+a+++ + +++i+++++e ++  E R+++++   e++ 
  CCE30826.1  5 DALDAQSQaQLHAAIQQAVQEGLAATEQRLAQSEAVREQQA 45
                5566677779********************99887664444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.64
                HHHHHHHHHHHHHHHH-TTEEEE CS
    GPW_gp25 43 dreriareireailrfEpRirlv 65
                d  r+ +  +e + rf+ R++ +
  CCE30826.1 67 DDMRAGEPFTEFLVRFDNRFESQ 89
                55555555566777777776654 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4     0.066     2e+02      16      43 ..       5      29 ..       1      33 [. 0.48
   2 ?   11.9   0.8   9.3e-05      0.28       2      61 ..      24      83 ..      23      88 .. 0.78
   3 ?   -1.8   0.0       1.7   5.1e+03       9      30 ..      87     108 ..      84     117 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.066
     DUF4404 16 esldeetralLeslaedieellaeedaa 43
                ++ld +++a+L+     i+++++e  aa
  CCE30826.1  5 DALDAQSQAQLH---AAIQQAVQEGLAA 29
                445555555554...4455555554444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 9.3e-05
     DUF4404  2 kelLekLheeLeqnesldeetralLeslaedieellaeedaaaeeee.laerlneaverFe 61
                +e L++ ++ L+q+e++ e+++a+L++l++  ++l    + a+ ++    e  +e + rF 
  CCE30826.1 24 QEGLAATEQRLAQSEAVREQQAAQLAELNSAFQQLH-GASRASRDDMrAGEPFTEFLVRFD 83
                667888899***********************9555.444444444448888888888886 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.7
     DUF4404   9 heeLeqnesldeetralLesla 30 
                 +++L++ ++l +++ +++e l+
  CCE30826.1  87 ESQLAKADRLGNADGDKIEMLQ 108
                 5677777777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1494  (0.0833287); expected 358.6 (0.02)
Passed bias filter:                      738  (0.0411624); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1059.61
//
Query:       CCE30827.1  [L=837]
Description: uncharacterized protein CPUR_04676 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     7e-123  410.4   0.1   9.6e-123  410.0   0.1    1.2  1  Pkinase_fungal  Fungal protein kinase
    5.9e-07   29.1   0.0    1.1e-06   28.2   0.0    1.3  1  Pkinase         Protein kinase domain
     0.0055   16.1   0.1     0.0098   15.3   0.1    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.0   0.1  1.6e-126  9.6e-123       3     408 .]     303     726 ..     301     726 .. 0.85

  Alignments for each domain:
  == domain 1  score: 410.0 bits;  conditional E-value: 1.6e-126
  Pkinase_fungal   3 dlvlvskd...ekveekkkdwedvlvvgelkkkseeeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdp 94 
                     d+++vs++   +  e    +    l+ gel++++ +++ +++ l Lar+a+++++aq tRrFv+g+tlcgs mr+w+fDR G ++se+i+++++p
      CCE30827.1 303 DVAFVSAAdleRGPESLRRSCARMLARGELRRDPMADEAQETRLALARNAQDMLTAQGTRRFVLGLTLCGSFMRVWLFDRLGGIASEQINVNTEP 397
                     555555554543444455666778899******************************************************************** PP

  Pkinase_fungal  95 ekfirvvlglllmdddeLGlDptiv.....te.sdgrrs.yeikaeeeketekleleeplarqraivgRgTtcwrarkegergkeyvvKdsWrda 182
                      +fi+v+lg+l+m++++LG+D++i+     +e  dg+++ +ei ++++ ++++++l++ + r+ +ivgR+Ttcw a+ +++ ++ +vvKdsW++ 
      CCE30827.1 398 LQFIKVILGFLWMSEEDLGFDSSIKrpdltVEgADGKKQyIEI-EQQDGSKKCIILDQAMPRKPCIVGRATTCWTAHVKDDPKTILVVKDSWQEV 491
                     *****************************97777776550567.888999999**************************99999*********** PP

  Pkinase_fungal 183 erksEaelLkkaeergvegvarlvahedve..ekdddi.aeiRkgldvtka.ekfrskrkvvsssssqe.....lsskaevklkksesskkvekr 268
                     +r++E+++   a++++v +var+++he+v+  +++dd+ +++R+gl   +a ++ +   ++  + +s+      +s++ +++ k+ ++s +   +
      CCE30827.1 492 KRDEEGDMFSLASREDVVNVARHYHHETVQirGMNDDVhTCVRRGLAKATAsNSAQPDSQSSGRAPSERlrkrgTSTNPSMSAKE-TGSVQHPRK 585
                     **************************************9********99996665555555555555445555322222222222.222222223 PP

  Pkinase_fungal 269 svdssvstskrsr..............lenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkeger 349
                     ++          +              l+nrvhrr++++++G+pi+ka+s+++ll++l+ +Ikgh+ L+ +agiLHrDiS+ N++i+++ ++++ 
      CCE30827.1 586 KI----------CsswptdadtkppteLRNRVHRRVIVQDYGRPIYKASSRQALLASLEGCIKGHQALY-EAGILHRDISISNLMINEE-RNESW 668
                     33..........23333334444577799****************************************.*****************55.66699 PP

  Pkinase_fungal 350 kglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDLESffyvllwic 408
                       +LiDLD+a+e+++ + +s++r++tGT++Fmai++l+ge+Hs++hDLESff+vl+wic
      CCE30827.1 669 PHFLIDLDHAIEIDR-HDASNERNKTGTRAFMAIGILQGEKHSFLHDLESFFWVLFWIC 726
                     9*************8.777788************************************9 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.8e-10   1.1e-06     105     180 ..     634     715 ..     614     728 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.8e-10
                 HHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHH CS
     Pkinase 105 kqilegleylHskgiiHrDlKpeNiLidekge....lKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDv 180
                 +  ++g + l+++gi+HrD+  +N++i+e+++      ++D+++a e++++     ++ +gt+ ++A  +l+++++s   D+
  CCE30827.1 634 EGCIKGHQALYEAGILHRDISISNLMINEERNeswpHFLIDLDHAIEIDRHDAsnERNKTGTRAFMAIGILQGEKHSFLHDL 715
                 556789999*******************6666699989***********9988778899************99999877775 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.6e-06    0.0098     133     201 ..     642     709 ..     610     714 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-06
         Kdo 133 klhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradrwrekdLarLkrsflkielteadwe 201
                  l +ag+ H+d+ + n+++++e +e     liDld a +  r d  +e++     r f++i++ + + +
  CCE30827.1 642 ALYEAGILHRDISISNLMINEERNESWPHFLIDLDHAIEIDRHDASNERNKT-GTRAFMAIGILQGEKH 709
                 6889***********************************9988887777743.3555666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 5707.55
//
Query:       CCE30828.1  [L=552]
Description: uncharacterized protein CPUR_04677 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.7e-124  415.1   0.0   3.3e-124  414.8   0.0    1.0  1  Pkinase_fungal  Fungal protein kinase
    1.8e-07   30.8   0.0      3e-07   30.1   0.0    1.2  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.028   13.8   0.1      0.048   13.0   0.1    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.029   14.3   0.0      0.073   13.0   0.0    1.7  1  APH             Phosphotransferase enzyme family
       0.08   12.2   0.1       0.14   11.5   0.1    1.3  1  Pkinase_Tyr     Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  414.8   0.0  9.3e-128  3.3e-124      12     408 .]      28     441 ..      17     441 .. 0.89

  Alignments for each domain:
  == domain 1  score: 414.8 bits;  conditional E-value: 9.3e-128
  Pkinase_fungal  12 kveekkkdwedvlvvgelkkkseeeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlglll 106
                       e+++++    +++gel++++ +++ +++ l Lar+a++++aaq tRrF +gftlcgs mr+w+fDR G ++se+i+++++p +fi+v+lg+l+
      CCE30828.1  28 GPENSTCSCARLMALGELRRNPMADEAQETRLALARNAQDMLAAQSTRRFALGFTLCGSLMRVWLFDRLGGVASEQINVNTEPLQFIKVILGFLW 122
                     557888999999*********************************************************************************** PP

  Pkinase_fungal 107 mdddeLGlDptiv.....te.sdgrrsyeikaeeeketekleleeplarqraivgRgTtcwrarkegergkeyvvKdsWrdaerksEaelLkkae 195
                     m++++LG+D++i+     +e  dg+++y+  ++ + ++++++l++ + r+ +ivgR+Ttcw+a+ +++ ++ +vvKdsW++ +r++E+++L  a+
      CCE30828.1 123 MSEEDLGFDSSIKrldltVEgADGKKRYIDVERLDGSKKCIVLDQGILRSPCIVGRATTCWKAHVKDDPETILVVKDSWQEVKRDEEGDMLLLAT 217
                     *****************97777877665534788999999**************************99999************************ PP

  Pkinase_fungal 196 ergvegvarlvahedve..ekdddi.aeiRkgldvtka.ekfrskrkvvsssssqelsskaevklkksesskkvekrsvdssvstskrsr..... 281
                     ++gv +var+++he+v+  +++dd+ a++R+gl   +a +  +   +++s+ +s+      + +++  +++ ++++++ ds+++++k+ +     
      CCE30828.1 218 RKGVVNVARHYHHETVQvrGMNDDVrACVRRGLVKATAlKPAQYDSESASRAPSE------RLRKRGTSTNPSTSAEEEDSGLHPRKKICsappa 306
                     *********************************9999954444444444433333......3333333333333444555555777777788999 PP

  Pkinase_fungal 282 ...........lenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsdd 365
                                l+nrvhrr++++++Gk+i+ka+s+++ll++l+ +Ikgh+sL+ +agiLHrDiS+nN++i++++k ++   +LiDLD+a+e+++ 
      CCE30828.1 307 ptdvatgpqieLRNRVHRRVIVQDYGKAIYKASSRQALLACLEGCIKGHQSLY-EAGILHRDISINNLMINEEAK-QSWPHFLIDLDHAIEIGR- 398
                     9999999****9*****************************************.*****************6655.5999*************8. PP

  Pkinase_fungal 366 ssesgarertGTleFmaievlkgeeHsyrhDLESffyvllwic 408
                     + +s +r  +GT++Fmaie+lkgeeHs++hDLESff+vl+wic
      CCE30828.1 399 NDASIERANIGTRPFMAIELLKGEEHSFLHDLESFFWVLFWIC 441
                     888888************************************9 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   8.3e-11     3e-07     102     180 ..     346     430 ..     323     444 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 8.3e-11
                 HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHH CS
     Pkinase 102 kiakqilegleylHskgiiHrDlKpeNiLidekge....lKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDv 180
                   ++  ++g + l+++gi+HrD+  +N++i+e+++      ++D+++a e+ ++     +  +gt+ ++A E+lk++e+s   D+
  CCE30828.1 346 ACLEGCIKGHQSLYEAGILHRDISINNLMINEEAKqswpHFLIDLDHAIEIGRNDAsiERANIGTRPFMAIELLKGEEHSFLHDL 430
                 556667889999*******************6666699989**********99988888999************99999887775 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.3e-05     0.048     133     175 ..     357     399 ..     325     411 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
         Kdo 133 klhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlra 175
                  l +ag+ H+d+ + n+++++e+++     liDld a +  r+
  CCE30828.1 357 SLYEAGILHRDISINNLMINEEAKQSWPHFLIDLDHAIEIGRN 399
                 6889*******************9***********99877655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     2e-05     0.073     152     194 ..     340     391 ..     282     394 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2e-05
                 HHHHHHHH--S.......SS-EEEE-SS-SGGGEEEC......TTEEEEE---T CS
         APH 152 vlaalaallpg.......elptvllHgDlhpgNllvd....pddgrvtGviDfe 194
                  ++al+a l g         ++++lH+D++ +Nl+++    +  +++  +iD++
  CCE30828.1 340 SRQALLACLEGcikghqsLYEAGILHRDISINNLMINeeakQSWPHF--LIDLD 391
                 45555555555555599999*****************6543333333..66655 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.8e-05      0.14     104     203 ..     343     446 ..     316     464 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.8e-05
                  HHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST....TTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHH.HHHH CS
  Pkinase_Tyr 104 dllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf....GLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfG.vllw 196
                   ll +     kG + L +  ++Hrd++  N +++e+ +     f      a +i ++d  + ++ +     +ma+E lk ++ +   D  sf  vl w
   CCE30828.1 343 ALLACLEGCIKGHQSLYEAGILHRDISINNLMINEEAKQSWPHFlidlDHAIEIGRND-ASIERANIGTRPFMAIELLKGEEHSFLHDLESFFwVLFW 439
                  555566666799999*******************977665555411004444453333.34444455667899*****99999999999997625555 PP

                  HHHTTSS CS
  Pkinase_Tyr 197 Eiftlge 203
                    + +g+
   CCE30828.1 440 ICIHYGK 446
                  5555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3966.12
//
Query:       CCE30829.1  [L=233]
Description: uncharacterized protein CPUR_04678 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-22   79.9   0.0      2e-22   79.6   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   1.1e-26     2e-22       2     108 ..     106     213 ..     105     217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 1.1e-26
  Pkinase_fungal   2 pdlvlvskd...ekveekkkdwedvlvvgelkkkseeeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkd 93 
                     +d  ++s++   + +e+ ++ w+ +l  +elk+++ +   ++a l La+yar  +++q tRr+ +gftlcgs++r+w+f   G ++s+r+d++kd
      CCE30829.1 106 LDAGFISAAdleSGQETLTYFWTTILGSAELKQNEAA--ERAAELSLAKYARILLTTQGTRRYALGFTLCGSSLRVWLFVSVGGMASKRVDVNKD 198
                     56666666557566778899**************998..5566689************************************************* PP

  Pkinase_fungal  94 pekfirvvlglllmd 108
                     p +fi+v+lg+l+m+
      CCE30829.1 199 PLQFIKVMLGFLWMR 213
                     **************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1710.87
//
Query:       CCE30830.1  [L=166]
Description: uncharacterized protein CPUR_04679 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1170.60
//
Query:       CCE30831.1  [L=841]
Description: uncharacterized protein CPUR_04680 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.9e-120  400.4   0.0   1.2e-119  399.8   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
    3.7e-07   29.8   0.0    1.1e-06   28.2   0.0    1.7  2  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.035   14.0   0.0       0.09   12.7   0.0    1.7  1  APH             Phosphotransferase enzyme family
      0.092   12.1   0.0       0.16   11.3   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  399.8   0.0  2.7e-123  1.2e-119      17     408 .]     319     730 ..     300     730 .. 0.85

  Alignments for each domain:
  == domain 1  score: 399.8 bits;  conditional E-value: 2.7e-123
  Pkinase_fungal  17 kkdwedvlvvgelkkkseeeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlglllmddde 111
                       +    l+ gel++++ ++  +++ l Lar+a+++++aq tRrFv+gftlcgs mr+w+fDR G ++se+i+i+++p +fi+v+lg+l+m++++
      CCE30831.1 319 RSSCARMLARGELRRDPIADAAQETRLALARNAQDMLTAQGTRRFVLGFTLCGSLMRVWLFDRLGGIASEKININREPLQFIKVILGFLWMSEED 413
                     55566778899************************************************************************************ PP

  Pkinase_fungal 112 LGlDptiv.......tesdgrrsyeikaeeeketekleleeplarqraivgRgTtcwrarkegergkeyvvKdsWrdaerksEaelLkkaeergv 199
                     LG+D++i+       + + ++r++ i ++ + ++e+++l+e + r+ +ivgR+Ttcw+a+ +++ ++ +vvKdsW++ + ++E+++L  a+++gv
      CCE30831.1 414 LGFDSSIKgpdptleIADGKKRCIDI-ERLDGSKECIVLDEEILRSPCIVGRATTCWKAHVKDDAETILVVKDSWQEVKPDEEGDMLLLATRKGV 507
                     ************96554666677778.8889999******************************999**************************** PP

  Pkinase_fungal 200 egvarlvahedve..ekdddi.aeiRkgldvtka.ekfrskrkvvsssssqe..............lsskaevklkksesskkvekrsvdssvst 276
                      +var+++he+v+  +++ddi a++R+gl   +a ++ +++ ++ s+ + +                          +e+s+          +++
      CCE30831.1 508 VNVARHYHHETVQirGMNDDIhACVRRGLVKATAsNSAQNNSQSFSRPPLERprkrgtstnpsasaE----------EEGSG----------LHP 582
                     *****************************99999777777666666555544556543333222221..........22222..........233 PP

  Pkinase_fungal 277 skrsr..................lenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglL 353
                     +k+ +                   +nrvhrr++++++Gk+i+ka+s++++l++l+ +Ikgh+sL+ +agiLHrDiS+nN++i++++ ++ +  +L
      CCE30831.1 583 RKKICsspptdsateprielpneSRNRVHRRVIVQDYGKAIYKASSRQAVLACLEGCIKGHQSLY-EAGILHRDISINNLMINEET-KQACPHFL 675
                     3333333333334445677777777****************************************.*****************665.55999*** PP

  Pkinase_fungal 354 iDLDlakelsddssesgarertGTleFmaievlkgee.HsyrhDLESffyvllwic 408
                     iDLD+a++++  +   ++r ++GT++Fma+e+lkg e Hs++hDLESff+vl+wic
      CCE30831.1 676 IDLDHAIKIGP-NVLPNERAKIGTRAFMAVELLKGREeHSFLHDLESFFWVLYWIC 730
                     **********5.788888****************9556*****************9 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.46     2e+03      14      52 ..      72     110 ..      69     114 .. 0.89
   2 !   28.2   0.0   2.5e-10   1.1e-06     102     179 ..     634     718 ..     611     744 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.46
                 EEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHH CS
     Pkinase  14 kVykaveketgkivAvKkikkekakkkkekkvlrEikil 52 
                 +V++av +++    Av ++ k  ++k++ek+++ E+  l
  CCE30831.1  72 TVFRAVVTDDIGDAAVRHLLKAAITKTDEKTLWDEVLTL 110
                 7999999999999*******************9999766 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 2.5e-10
                 HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHH.TTSCBSHHHH CS
     Pkinase 102 kiakqilegleylHskgiiHrDlKpeNiLidekge....lKitDFGlakelesssk..ltsfvgtseYlAPEvl.keneyskkvD 179
                   ++  ++g + l+++gi+HrD+  +N++i+e+ +      ++D+++a ++  +     +  +gt+ ++A E+l +++e+s   D
  CCE30831.1 634 ACLEGCIKGHQSLYEAGILHRDISINNLMINEETKqacpHFLIDLDHAIKIGPNVLpnERAKIGTRAFMAVELLkGREEHSFLHD 718
                 566677899999*******************5544599989************9886677889***********55556666666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     2e-05      0.09     149     182 ..     629     669 ..     583     684 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
                 HHHHHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..... CS
         APH 149 eeqvlaalaallpg...elptvllHgDlhpgNllvd....p 182
                 +++vla+l+    g     ++++lH+D++ +Nl+++    +
  CCE30831.1 629 RQAVLACLEGCIKGhqsLYEAGILHRDISINNLMINeetkQ 669
                 3337777777777799999*****************44333 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.6e-05      0.16     133     170 ..     645     682 ..     614     690 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.6e-05
         Kdo 133 klhragvnHadlyaknillqqeeeeeaeiwliDldkar 170
                  l +ag+ H+d+ + n+++++e +++    liDld a 
  CCE30831.1 645 SLYEAGILHRDISINNLMINEETKQACPHFLIDLDHAI 682
                 6889*******************9***********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (841 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 5831.82
//
Query:       CCE30832.1  [L=505]
Description: uncharacterized protein CPUR_04681 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.4e-123  410.3   0.0   8.8e-123  410.1   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
      4e-07   29.7   0.0    6.5e-07   29.0   0.0    1.2  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.018   14.4   0.1       0.03   13.7   0.1    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
       0.02   14.8   0.1      0.051   13.5   0.0    1.7  2  APH             Phosphotransferase enzyme family
      0.084   12.1   0.0       0.14   11.4   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.1   0.0  2.5e-126  8.8e-123      37     408 .]       4     394 ..       1     394 [. 0.87

  Alignments for each domain:
  == domain 1  score: 410.1 bits;  conditional E-value: 2.5e-126
  Pkinase_fungal  37 klkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlglllmdddeLGlDptiv.....te.sdgr 125
                     + +++ l Lar+a++++aaq tRrF +gftlcgs mr+w+fDR G ++se+i+i+++p +fi+v+lg+l+m++++LG+D++i+     +e  dg+
      CCE30832.1   4 EDQETRLALARNAQDMLAAQSTRRFALGFTLCGSLMRVWLFDRLGGVASEQININTEPLQFIKVILGFLWMSEEDLGFDSSIKrpdltVEgADGK 98 
                     4577889********************************************************************************97777777 PP

  Pkinase_fungal 126 rsyeikaeeeketekleleeplarqraivgRgTtcwrarkegergkeyvvKdsWrdaerksEaelLkkaeergvegvarlvahedve..ekdddi 218
                     ++y+  ++ + ++++++l++ + r+ +ivgR+Ttcw+a+ +++ +k +vvKdsW++ +r++E+++L  a+++gv +var+++he+v+  +++ddi
      CCE30832.1  99 KRYIDVERPDGSKKCIVLDQGILRSPCIVGRATTCWKAHVKDDPEKILVVKDSWQEVKRDEEGDMLLLATRKGVVNVARHYHHETVQvrGMNDDI 193
                     65553367789999999************************99999************************************************* PP

  Pkinase_fungal 219 .aeiRkgldvtka.ekfrskrkvvsssssqe.....lsskaevklkksesskkvekrsvdssvstskrsr..................lenrvhr 288
                      a++R+gl      ++ +++ ++  + +s+      +s++ +++ +++ s             +++kr +                   +nrvhr
      CCE30832.1 194 rACVRRGLVKVIVsNSAQNNSQSFGRPPSERprkrgTSTNPNTSAEEEGSGL-----------PPRKRICsspstdsatkprfelppeSRNRVHR 277
                     ********88877567666666666555444444443333333333333333...........555555455555555556899**9999***** PP

  Pkinase_fungal 289 rlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmai 383
                     r++++++Gk+i+ka+s+++ll++l+ +Ikgh+sL+ +agiLHrDiS+nN++i++++ +++   +LiDLD+a+e+++ + +s +r++tGT++Fmai
      CCE30832.1 278 RVIVQDYGKAIYKASSRQALLACLEGCIKGHQSLY-EAGILHRDISINNLMINEET-KQSWPHFLIDLDHAIEIDR-HDASTERTKTGTRAFMAI 369
                     ***********************************.*****************665.55999*************8.777788************ PP

  Pkinase_fungal 384 evlkgeeHsyrhDLESffyvllwic 408
                     ++l+geeHs++hDLESff+vllwic
      CCE30832.1 370 GLLQGEEHSFLHDLESFFWVLLWIC 394
                     ************************9 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.8e-10   6.5e-07     102     179 ..     299     382 ..     278     399 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.8e-10
                 HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHH CS
     Pkinase 102 kiakqilegleylHskgiiHrDlKpeNiLidekge....lKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvD 179
                   ++  ++g + l+++gi+HrD+  +N++i+e+ +      ++D+++a e++++     ++ +gt+ ++A  +l+++e+s   D
  CCE30832.1 299 ACLEGCIKGHQSLYEAGILHRDISINNLMINEETKqswpHFLIDLDHAIEIDRHDAstERTKTGTRAFMAIGLLQGEEHSFLHD 382
                 556667889999*******************5544599989************9887788999***********9999987777 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   8.2e-06      0.03     133     176 ..     310     353 ..     279     380 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.2e-06
         Kdo 133 klhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlrad 176
                  l +ag+ H+d+ + n+++++e ++     liDld a +  r d
  CCE30832.1 310 SLYEAGILHRDISINNLMINEETKQSWPHFLIDLDHAIEIDRHD 353
                 6889*******************9************99888544 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.4e-05     0.051     152     194 ..     293     344 ..     245     352 .. 0.66
   2 ?   -3.2   0.0       1.8   6.4e+03     152     173 ..     415     435 ..     375     436 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
                 HHHHHHHH--S.......SS-EEEE-SS-SGGGEEEC......TTEEEEE---T CS
         APH 152 vlaalaallpg.......elptvllHgDlhpgNllvd....pddgrvtGviDfe 194
                  ++al+a l g         ++++lH+D++ +Nl+++    +  +++  +iD++
  CCE30832.1 293 SRQALLACLEGcikghqsLYEAGILHRDISINNLMINeetkQSWPHF--LIDLD 344
                 44555555555555599999*****************5543333333..66665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.8
                 HHHHHHHH--SSS-EEEE-SS- CS
         APH 152 vlaalaallpgelptvllHgDl 173
                  l+ l+ l+++ ++  + H+D+
  CCE30832.1 415 YLNDLDLLVHK-QRVIFSHNDF 435
                 56677777775.8889999997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.9e-05      0.14     104     204 ..     296     400 ..     280     418 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.9e-05
                  HHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST....TTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHH.HHHHH CS
  Pkinase_Tyr 104 dllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf....GLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsf.Gvllw 196
                   ll +     kG + L +  ++Hrd++  N +++e+++     f      a +i  +++ +++++++    +ma+  l+ ++ +   D  sf  vllw
   CCE30832.1 296 ALLACLEGCIKGHQSLYEAGILHRDISINNLMINEETKQSWPHFlidlDHAIEID-RHDASTERTKTGTRAFMAIGLLQGEEHSFLHDLESFfWVLLW 392
                  455555666789999*******************977666555511003344442.233344444556678999999999999999999996258889 PP

                  HHHTTSSG CS
  Pkinase_Tyr 197 Eiftlges 204
                    + +g+s
   CCE30832.1 393 ICIHYGKS 400
                  88888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3482.11
//
Query:       CCE30833.1  [L=168]
Description: uncharacterized protein CPUR_04682 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.055   13.2   0.0          1    9.1   0.0    2.3  2  S_100       S-100/ICaBP type calcium binding domain
      0.065   13.6   0.3       0.24   11.7   0.1    1.8  2  TetR_C_11   Tetracyclin repressor-like, C-terminal domain
        1.7    9.1   5.1         10    6.6   0.1    3.4  3  E3_binding  e3 binding domain


Domain annotation for each model (and alignments):
>> S_100  S-100/ICaBP type calcium binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00017         1       9      23 ..      19      33 ..      12      46 .. 0.88
   2 ?    1.8   0.0     0.034     2e+02       9      22 ..     142     155 ..     135     157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00017
                HHHHHHHHTSSSSTT CS
       S_100  9 IdvFhkYagkeGdkd 23
                 dvFh +a++eG +d
  CCE30833.1 19 LDVFHSFARQEGVCD 33
                69**********986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.034
                 HHHHHHHHTSSSST CS
       S_100   9 IdvFhkYagkeGdk 22 
                  d+F+ +a+++G +
  CCE30833.1 142 LDIFYSFAKQKGVG 155
                 589********965 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.23   1.4e+03       9      33 ..      43      67 ..      41      69 .. 0.86
   2 ?   11.7   0.1     4e-05      0.24       4      64 ..      69     128 ..      66     144 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.23
   TetR_C_11  9 gDLrallralaealaspragallra 33
                 D+r l+++l+  l+s++a+++l++
  CCE30833.1 43 KDVRFLATELVVCLRSHPAAKVLQG 67
                7999999999999999999999876 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4e-05
   TetR_C_11   4 tGslrgDLrallralaealas.pragallrallaeaqrdpelaealrerlleprraalravl 64 
                 +Gs+ +DL+al +++ + + + +  ++ll a ++ a +d +l +++ + +++  ++a+++  
  CCE30833.1  69 HGSVSDDLTALSKSVTTGMVGeDSVRRLLKAAITKA-DDKTLWDEVLA-FITASHTAIDTAT 128
                 59**************98888678999*****9999.89999999999.8888888887765 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0017        10      10      36 .]      25      46 ..      23      46 .. 0.89
   2 ?   -1.5   0.2      0.57   3.4e+03       6      12 ..      92      98 ..      92     104 .. 0.84
   3 ?    3.3   0.0     0.018   1.1e+02      10      22 ..     148     161 ..     147     168 .] 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0017
                HHHHCT-.-TTTS---CTTTBE-HHHHC CS
  E3_binding 10 lAkelGi.dLsdvkGtGpgGRItkeDVl 36
                +A++ G+ d+++v       RIt++DV+
  CCE30833.1 25 FARQEGVcDIAAV------DRITAKDVR 46
                7999999999999......7******96 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.57
                HHHHHHH CS
  E3_binding  6 aaRklAk 12
                ++R+l k
  CCE30833.1 92 SVRRLLK 98
                7999988 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.018
                 HHHHCT-.-TTTS- CS
  E3_binding  10 lAkelGi.dLsdvk 22 
                 +Ak++G+ d+++v 
  CCE30833.1 148 FAKQKGVgDIDAVD 161
                 69*****9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1300.55
//
Query:       CCE30834.1  [L=809]
Description: uncharacterized protein CPUR_04683 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-125  419.5   0.1   1.5e-125  419.2   0.1    1.1  1  Pkinase_fungal  Fungal protein kinase
     0.0038   16.6   0.0     0.0065   15.9   0.0    1.3  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.024   14.0   0.0      0.043   13.2   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.049   13.5   0.0       0.14   12.0   0.0    1.7  2  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  419.2   0.1  3.4e-129  1.5e-125       1     408 []     268     699 ..     268     699 .. 0.92

  Alignments for each domain:
  == domain 1  score: 419.2 bits;  conditional E-value: 3.4e-129
  Pkinase_fungal   1 kpdlvlvskd...ekveekkkdwedvlvvgelkkkseeeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirk 92 
                     k+d ++vs++   +++ + ++ w++vl  +elk++  +   k+a l L++y r  ++aq tRr+v+gftlcg  mr+w+fDR+G ++seri+i+k
      CCE30834.1 268 KLDACFVSAAdqeTAMGTLTYFWSQVLGAAELKENIVD--EKTAELALGQYSRISLTAQVTRRYVLGFTLCGPLMRVWLFDRQGGIASERININK 360
                     578888877765556677899****************9..6677789************************************************ PP

  Pkinase_fungal  93 dpekfirvvlglllmdddeLGlDptiv..........tesdgrrsyeikaeeeketekleleeplarqraivgRgTtcwrarkegergkeyvvKd 177
                     dp +fi+v+lg+l+m++++LG+Dpti+          ++++ ++++ei ++++ e+++++l+e++ + +++vgR+Ttcw+a+ +g+ ++ +vvKd
      CCE30834.1 361 DPLQFIKVILGFLWMSKEDLGFDPTIKgpdftldgpdISDEMKQYIEI-KKQDGEDKHIVLDEVISKISCVVGRATTCWKAHVKGHPEEILVVKD 454
                     ***********************************998899999999*.8899********************************99999***** PP

  Pkinase_fungal 178 sWrdaerksEaelLkkaeergvegvarlvahedve..ekdddi.aeiRkgldvtka.ekfrskrkvvsssssqelsskaevklkksesskkvekr 268
                     +W++++r sE+++L  ae+ +v +var+++he+v+  ++dddi +++R+gl+vt   ++ + +           +++ +++ l++ +++++++++
      CCE30834.1 455 TWQNKTRPSEGDMLLLAESGEVVNVARHYHHETVQirGMDDDIlTCVRRGLTVTAWdHAQHGT--NG-------SRTPSRTLLQELRNRETTSTN 540
                     ******************************************************993333332..22.......334445555666666667777 PP

  Pkinase_fungal 269 svdssvstskrsr..............lenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitds.kkege 348
                     +++s+++++kr +              l nrvhrr++++++Gk+i+ka+s+ +ll++++D+Ikgh+sL+ kagiLHrDiS+nN++i ++ +++++
      CCE30834.1 541 ETGSGLHPQKRVCysrptddaieppteLPNRVHRRVIVRDYGKAIYKASSRVALLACIEDCIKGHQSLY-KAGILHRDISINNLMIREEtATDQT 634
                     888888999999999999999999*9988****************************************.*****************997888** PP

  Pkinase_fungal 349 rkglLiDLDlakelsddssesga.....rertGTleFmaievlkgeeHsyrhDLESffyvllwic 408
                     +kg+LiDLDla++ +++++es+a     r+rt T++  ai+v++geeH+++hDLESff+vllwic
      CCE30834.1 635 EKGFLIDLDLAIQSNRPDTESDAtersqRTRTATRASTAIGVIEGEEHTFLHDLESFFWVLLWIC 699
                     *****************9999666666699**********************************9 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.5e-06    0.0065     104     169 ..     598     677 ..     581     702 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE......EEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHH CS
     Pkinase 104 akqilegleylHskgiiHrDlKpeNiLidekge......lKitDFGlakelesssk........ltsfvgtseYlAPEvl 169
                 ++  ++g + l+++gi+HrD+  +N++i e+          ++D++la + ++  +         +++++t+   A  v+
  CCE30834.1 598 IEDCIKGHQSLYKAGILHRDISINNLMIREETAtdqtekGFLIDLDLAIQSNRPDTesdatersQRTRTATRASTAIGVI 677
                 5667889999*******************63333555557799*****99999876666666555555555555555555 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.7e-06     0.043     133     173 ..     607     649 ..     582     661 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.7e-06
         Kdo 133 klhragvnHadlyaknillqqee..eeeaeiwliDldkarlrl 173
                  l +ag+ H+d+ + n+++++e   ++ ++  liDld a +  
  CCE30834.1 607 SLYKAGILHRDISINNLMIREETatDQTEKGFLIDLDLAIQSN 649
                 6889*****************9999999*********776655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.3   5.7e+03      81     112 ..     210     241 ..     205     271 .. 0.71
   2 ?   12.0   0.0   3.2e-05      0.14     152     196 ..     594     645 ..     534     649 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
                 E-SSHHHHHHHHHHHHHHHHHHCCHHCH.-ST CS
         APH  81 sllrklsaaqlpellealgeflaalhqvdpaa 112
                 s++  +++a+ ++++++l +f+ +l +++ ++
  CCE30834.1 210 SYESWPNPADEERVVAWLEDFITRLEEFSRPD 241
                 55555678888888888888888888885332 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.2e-05
                 HHHHHHHH--S...SS-EEEE-SS-SGGGEEEC........TTEEEEE---TT- CS
         APH 152 vlaalaallpg...elptvllHgDlhpgNllvd......pddgrvtGviDfeda 196
                 +la++++   g     ++++lH+D++ +Nl+++      +++  +  +iD+++a
  CCE30834.1 594 LLACIEDCIKGhqsLYKAGILHRDISINNLMIReetatdQTEKGF--LIDLDLA 645
                 677777777777778999***************999866555555..8888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 5847.64
//
Query:       CCE30835.1  [L=132]
Description: uncharacterized protein CPUR_04684 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 973.08
//
Query:       CCE30836.1  [L=844]
Description: uncharacterized protein CPUR_04685 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.9e-121  405.7   0.0   2.5e-121  405.3   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
    2.8e-06   26.9   0.1    4.7e-06   26.2   0.1    1.2  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.056   13.4   0.0       0.15   12.0   0.0    1.7  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.3   0.0  4.2e-125  2.5e-121      19     408 .]     322     733 ..     301     733 .. 0.85

  Alignments for each domain:
  == domain 1  score: 405.3 bits;  conditional E-value: 4.2e-125
  Pkinase_fungal  19 dwedvlvvgelkkkseeeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlglllmdddeLG 113
                     +    l+ gel++++ ++  +++ l Lar+a+++++aq tRrFv+gftlcgs mr+w+fDR G  +se+i+i+++p +fi+v+lg+l+m++++LG
      CCE30836.1 322 SCAGMLARGELRRDPIADAAQETRLALARSAQDMLTAQSTRRFVLGFTLCGSFMRVWLFDRLGGTASEQININTEPLQFIKVILGFLWMSEEDLG 416
                     555677889************************************************************************************** PP

  Pkinase_fungal 114 lDptiv.....te.sdgr.rsyeikaeeeketekleleeplarqraivgRgTtcwrarkegergkeyvvKdsWrdaerksEaelLkkaeergveg 201
                     +D++i+     +e  dg+ r + i ++ + ++++++l++ + r+ +ivgR+Ttcw+a+ +++ ++ +vvKdsW++ +r++E+++L  a+++gv +
      CCE30836.1 417 FDSSIKgpdltVEgADGKkRHIDI-EKTDGSKKCIVLDQGILRSPCIVGRATTCWKAHVKDDPETILVVKDSWQEVKRDEEGDMLLLATRKGVVN 510
                     **********96666655156667.777899999999***********************99999****************************** PP

  Pkinase_fungal 202 varlvahedve..ekdddi.aeiRkgldvtka.ekfrskrkvvsssssqe.....lsskaevklkksesskkvek.rsvdssvstskrsr..... 281
                     var+++he+v+  +++dd+ a++R+gl   +a ++ +s  ++  + +s+      +            s ++ ++ ++ +s+++++k+ +     
      CCE30836.1 511 VARHYHHETVQvrGMNDDVhACVRRGLVKATAsNSAQSDLQSSGRAPSERprkrdT------------STNPSTSaEEEGSGLHPRKKICssprt 593
                     *******************9*******99999555555444433333322333331............222222202222222555554455666 PP

  Pkinase_fungal 282 .............lenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitds.kkegerkglLiDLDlakel 362
                                   +nrvhrr++++++Gk+i+ka+s++++l++l+ +Ikgh+sL+ +agiLHrDiS+nN++i+++ +++ ++  +LiDLD+a+++
      CCE30836.1 594 nsateprielpneSRNRVHRRVIVQDYGKAIYKASSRQAVLACLEGCIKGHQSLY-EAGILHRDISINNLMINEEsETNTSCPHFLIDLDHAIKI 687
                     666667888888888****************************************.*****************998889**************** PP

  Pkinase_fungal 363 sddssesgarertGTleFmaievlkgee.HsyrhDLESffyvllwic 408
                     +  +   ++r+++GT++Fmai++l+g e Hs+ hDLESff+vl+wic
      CCE30836.1 688 DP-NVLPNKRTKIGTRAFMAIDLLNGMEeHSFSHDLESFFWVLYWIC 733
                     *5.788888****************9656*****************9 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   7.8e-10   4.7e-06     102     180 ..     635     722 ..     612     744 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 7.8e-10
                 HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE......EEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHH.TTSCBSHHHHH CS
     Pkinase 102 kiakqilegleylHskgiiHrDlKpeNiLidekge......lKitDFGlakelesssk..ltsfvgtseYlAPEvl.keneyskkvDv 180
                   ++  ++g + l+++gi+HrD+  +N++i+e+ e        ++D+++a +++ +    +++ +gt+ ++A  +l + +e+s + D+
  CCE30836.1 635 ACLEGCIKGHQSLYEAGILHRDISINNLMINEESEtntscpHFLIDLDHAIKIDPNVLpnKRTKIGTRAFMAIDLLnGMEEHSFSHDL 722
                 566677899999*******************666668999988************98888999*************766778888776 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.5e-05      0.15     149     182 ..     630     672 ..     582     690 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.5e-05
                 HHHHHHHHHHH--S...SS-EEEE-SS-SGGGEEEC....... CS
         APH 149 eeqvlaalaallpg...elptvllHgDlhpgNllvd......p 182
                 +++vla+l+    g     ++++lH+D++ +Nl+++       
  CCE30836.1 630 RQAVLACLEGCIKGhqsLYEAGILHRDISINNLMINeesetnT 672
                 3337777777777799999*****************7654332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 5654.24
//
Query:       CCE30837.1  [L=94]
Description: uncharacterized protein CPUR_04686 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 691.22
//
Query:       CCE30838.1  [L=149]
Description: uncharacterized protein CPUR_04687 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1141.20
//
Query:       CCE30839.1  [L=844]
Description: uncharacterized protein CPUR_04688 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.4e-118  393.7   0.0   1.1e-117  393.3   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
    2.9e-05   23.6   0.0    5.8e-05   22.6   0.0    1.4  1  Pkinase         Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.3   0.0  1.3e-121  1.1e-117      22     408 .]     337     733 ..     318     733 .. 0.87

  Alignments for each domain:
  == domain 1  score: 393.3 bits;  conditional E-value: 1.3e-121
  Pkinase_fungal  22 dvlvvgelkkkseeeklkkallqLaryarevfaaqptRrFvigftlcgsemrlwvfDRsGvlsseridirkdpekfirvvlglllmdddeLGlDp 116
                     ++lv+g+l +++ +++ ++a   Lar+a++++aaq tRrF +gftlc+s mr+w+fDR G  +se+idi+++p +fi+v+lg+l+m++++LG+D+
      CCE30839.1 337 EILVHGKLMSDPMADEAQEARYALARNAQDMLAAQGTRRFALGFTLCESYMRVWLFDRLGGTASEQIDIHTEPIRFIKVMLGFLWMSEEDLGFDS 431
                     79********************************************************************************************* PP

  Pkinase_fungal 117 tivtesdgrrsyeikaeeeketekleleeplarqraivgRgTtcwrarkegergkeyvvKdsWrdaerksEaelLkkaeergvegvarlvahedv 211
                     +i   s ++r++ei  e++ ++++++l++   r+ +ivgRgTtcw+a+ +++ ++ +v+KdsW++ +r++E+e+L  a++++v +var+++he+v
      CCE30839.1 432 SI-EGSGNSRYLEI--EKNGSKKCIVLDQERKRTPCIVGRGTTCWKAHDDDDPTTILVMKDSWQEVKRDHEGEMLLYATRKNVVNVARHYHHETV 523
                     **.35999999999..8899*****************************999999**************************************** PP

  Pkinase_fungal 212 e..ekdddi.aeiRkgldvtka.ekfrskrkvvsssssqe.........lsskaevklkksesskkvekrsvdssvstskrsr........lenr 285
                     +  ++ddd+ +++R+gl   +  ++ rs  ++       +         +   +  + ++++ss+ +  +++ ss++t+  ++        l nr
      CCE30839.1 524 QirGMDDDVrQCVRRGLVKATVsTSTRSDPQSSGGA---PslglrkrrmT---STDSDTEETSSELRPRKKICSSWPTNTATEprtelpteLPNR 612
                     *****************8888744444444433333...24556653221...2222222222222223333333333333325677888988** PP

  Pkinase_fungal 286 vhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitds.kkegerkglLiDLDlakelsddssesgarertGTle 379
                     vhrr++++++Gkpi++a+s+++ll++l+ +I+gh+sL+ +agiLHrD+S nN+li+++ +++ +   +LiDLD a+ +++  ++ ++r+++GT++
      CCE30839.1 613 VHRRVIVRDYGKPIYRASSRLALLACLEGCITGHQSLY-QAGILHRDVSLNNLLINEEsETNLSLPHFLIDLDQAIYTDR--HDPSERTKVGTRA 704
                     **************************************.*****************9978889999************95..556679******* PP

  Pkinase_fungal 380 FmaievlkgeeHsyrhDLESffyvllwic 408
                     Fmai++l geeHs++hDLESff+v+lwic
      CCE30839.1 705 FMAIGLLDGEEHSFVHDLESFFWVFLWIC 733
                     ****************************9 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   6.4e-09   5.8e-05     108     179 ..     643     721 ..     630     730 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 6.4e-09
                 HHHHHHHHHTTEE-SS-SGGGEEEETTTE......EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHH CS
     Pkinase 108 legleylHskgiiHrDlKpeNiLidekge......lKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvD 179
                 ++g + l+++gi+HrD+  +N+Li+e+ e        ++D++ a   +++ +  ++ vgt+ ++A  +l+++e+s   D
  CCE30839.1 643 ITGHQSLYQAGILHRDVSLNNLLINEESEtnlslpHFLIDLDQAIYTDRHDPsERTKVGTRAFMAIGLLDGEEHSFVHD 721
                 5677889******************6666688887789*********999887999*********99998888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5700.89
//
Query:       CCE30840.1  [L=144]
Description: uncharacterized protein CPUR_04689 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1125.24
//
Query:       CCE30841.1  [L=853]
Description: related to nucleotide diphosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-89  299.7   0.3    5.3e-89  299.3   0.3    1.1  1  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp
     0.0022   17.5   0.1       0.07   12.5   0.0    2.3  2  Sulfatase     Sulfatase
  ------ inclusion threshold ------
      0.089   12.9   0.1       0.18   11.9   0.1    1.4  1  PglZ          PglZ domain


Domain annotation for each model (and alignments):
>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.3   0.3   8.9e-93   5.3e-89       1     357 []     265     624 ..     265     624 .. 0.92

  Alignments for each domain:
  == domain 1  score: 299.3 bits;  conditional E-value: 8.9e-93
                   EEEEEETT-BTTHHHHHGSTSHHHHHHHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SSSEEETTTTEEEEEETTTTGG...GGGCTT.S CS
  Phosphodiest   1 vlvislDGlradlldrlaellpnlaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgNtfydrktgeyvvfvtededa...prwwqg.e 93 
                   ++++slDG+rad l r  +l+p l+aL++eg+s p+++p+fP+lTfpnh++l+TGlyP+ HGivgN+f+d+++++  +f  +d+++   prww   e
    CCE30841.1 265 TIILSLDGFRADFLHR--GLTPRLSALIREGISPPYMTPSFPSLTFPNHYTLATGLYPETHGIVGNSFWDPDLQA--EFYYTDPARsldPRWWAAgE 357
                   699*************..*********************************************************..77777777779*****999* PP

                   -HHHHHHHTHTTCEEEESETTTTSEBTTCT.SC.TBHHSBTCT.CSTTSCHHHHHHHHHHHHH.............HHCHTHSHHHHHCT...SSES CS
  Phosphodiest  94 piwdtaakarglkaaalfwpgsevdystyyylvsetppryleddfnakvpledkvdkavlqtw.............ldaafakvvlekel...ekpd 174
                   p+w+ a+k+ g++aa+++wpgse+ ++       ++ ++ + d+fn+k+ l+ kv++ +l+ +             l+++++    ++e     +p+
    CCE30841.1 358 PFWVSAEKQ-GIRAAVHMWPGSEARIQ-------GMFASIV-DKFNEKEALDNKVSR-ILGLLdlpgpgqgplvqtLQTSDKV--ETREDttnTRPQ 442
                   *********.****************9.......99****9.99*****99999987.8856688999999988665555543..33333579**** PP

                   EEEEEECCCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEEHTTSEEEGGGTSTGGHGEEEEECBHHS.SSEEEE CS
  Phosphodiest 175 lllvyleetDtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHGmadvsddkvielndlleekgllhlkdegkggakaliai 271
                   l++ y++++D+ gHk+Gp+s e++ +l++vD+++g Ll++l++r+l+  +n+i+vSDHGma+++ +++++l+dl+++  ++ ++d++     +l+++
    CCE30841.1 443 LIAAYVPNVDSDGHKYGPNSTEINSTLQSVDNMLGMLLQGLQDRNLTHIVNVIVVSDHGMATTDTSRLLQLEDLVDTT-KIAHMDGW-----PLYGL 533
                   ***************************************************************98************9.78888899.....***** PP

                   EESTEEE.CCCTTHHHHHHHHHHTCHHCCHST.HTTTEEEEEGG.GS-GGGCH..STTS-SEEEEE-TTEEEESSTTCS.........SBS-SEE-- CS
  Phosphodiest 272 npkarelnrvaeaeaeevyaelkakleelrkk.egealavylke.aipkrlhy..kkrapdlvlvadpgwsitskdkpd.........eyeikgthG 355
                   +p        +++++   y++lk+k+   +     + ++vyl++ ++p+ +++  ++r+ +l+lv++ gw i++k +            y + g hG
    CCE30841.1 534 RPH-------RDEDIPVLYEQLKKKATNTT-AgAQRVFDVYLRDeDMPQQYNFarNRRIAPLWLVPKTGWAIVQKHEVLveeaqktgeAYHPRGLHG 622
                   ***.......***************66655.55889********99*******988*******************8777999999999999999999 PP

                   SS CS
  Phosphodiest 356 yd 357
                   yd
    CCE30841.1 623 YD 624
                   97 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.012        74      23      71 ..     280     329 ..     263     338 .. 0.77
   2 !   12.5   0.0   1.2e-05      0.07     197     253 ..     431     504 ..     371     558 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.012
                 SCSSHHHHHHHHTSEEESSEE.-SSSSHHHHHHHHHHSS-HHHHTHSSCC CS
   Sulfatase  23 tattpnldrlaeeglrftnfy.saaplcspsraalltgryphnsgvasnt 71 
                 +  tp+l++l +eg+    +  s  +l+ p   +l tg+yp+++g++ n+
  CCE30841.1 280 RGLTPRLSALIREGISPPYMTpSFPSLTFPNHYTLATGLYPETHGIVGNS 329
                 445999999999999755554433459******************99875 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.2e-05
                 STTTTCCCCCCH.................HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCC CS
   Sulfatase 197 atffddgseaar.................qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasl 253
                 +t++d+++++++                  + ++   ++ +vD ++g +l+ L++ +l   + v+++SDhg ++
  CCE30841.1 431 ETREDTTNTRPQliaayvpnvdsdghkygPNSTEINSTLQSVDNMLGMLLQGLQDRNLTHIVNVIVVSDHGMAT 504
                 44444444444466666777777777777888888899*********************************877 PP

>> PglZ  PglZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     3e-05      0.18      99     169 ..     426     502 ..     417     507 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
        PglZ  99 elkkderre..llkdkevvyivhnkvDalgdkasteqksfeaveeslk.elkelvksllee...ngykvlltaDHGf 169
                 + +k e re  +    ++++ ++ +vD+ g+k+       +   +s+   l  l++ l ++   +  +v++++DHG 
  CCE30841.1 426 TSDKVETREdtTNTRPQLIAAYVPNVDSDGHKYGPNSTEINSTLQSVDnMLGMLLQGLQDRnltHIVNVIVVSDHGM 502
                 555666666545566799*************765555555555555543555566666666222356889******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 6040.32
//
Query:       CCE30842.1  [L=826]
Description: uncharacterized protein CPUR_04691 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-10   40.6   0.6    5.6e-10   39.7   0.6    1.5  1  HsbA      Hydrophobic surface binding protein A


Domain annotation for each model (and alignments):
>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.6   3.1e-14   5.6e-10       2     120 .]      28     144 ..      27     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 3.1e-14
                 HHHHHHHHHHHHHHHHHHHHHHH--SH..HHHHHHHHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHT-HHHH CS
        HsbA   2 atvisdittistavtaldtavnafnGgasalpilsasnalvsaikkattdaqasapltdeealalaqavqtLepdvkaaldaliaKkpafdkagltslv 100
                 a++++++  + ++ + l ++vn+ + +  + +  +a++a+v ++k++ ++++asa l +  +++l  +v++L+ +  ++   l+ Kk+af+ ag ++lv
  CCE30842.1  28 AAINDVVGRVGAHFELLSNQVNGPTTD--VKSFEDAATAVVVTLKNGKDTIEASADLPLFATTDLSITVTELKSKCLTLAVGLKYKKDAFEDAGCCDLV 124
                 689999999999999999999987555..99******************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHH CS
        HsbA 101 lssLqdlkaasdaLsdalvs 120
                 +   +++   +++L+ a++s
  CCE30842.1 125 REKTAEIHLHATDLIHAIIS 144
                 ****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 6081.25
//
Query:       CCE30843.1  [L=1212]
Description: related to DNA repair protein RAD16 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-62  210.3   0.0    6.3e-62  209.3   0.0    1.5  1  SNF2_N         SNF2 family N-terminal domain
    9.8e-16   58.1   0.0    3.1e-15   56.5   0.0    1.9  1  Helicase_C     Helicase conserved C-terminal domain
    8.4e-08   32.1   1.9    8.4e-08   32.1   1.9    2.0  2  zf-RING_UBOX   RING-type zinc-finger
    1.3e-07   31.4   5.1    2.5e-07   30.4   2.3    2.5  2  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
    1.8e-07   30.9   3.9    4.1e-07   29.7   3.9    1.6  1  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
    1.7e-06   28.2   0.0    4.4e-06   26.8   0.0    1.8  1  ResIII         Type III restriction enzyme, res subunit
    3.7e-06   26.7   7.1    3.7e-06   26.7   7.1    2.0  2  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
    8.5e-05   22.8   6.7    0.00023   21.4   6.7    1.8  1  zf-RING_2      Ring finger domain
    0.00021   21.2   5.5    0.00049   20.0   5.5    1.7  1  zf-RING_5      zinc-RING finger domain
     0.0012   19.0   6.9     0.0031   17.6   6.9    1.8  1  zf-C3HC4_4     zinc finger of C3HC4-type, RING
     0.0052   16.0   0.0      0.012   14.8   0.0    1.6  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
  ------ inclusion threshold ------
      0.012   15.4   3.1      0.039   13.8   3.2    1.9  1  zf-RING_4      RING/Ubox like zinc-binding domain
       0.25   11.6   3.6       0.97    9.7   1.7    2.4  2  zf-4CXXC_R1    Zinc-finger domain of monoamine-oxidase A repr
          1    9.2   3.3       0.61    9.9   0.6    2.1  2  zf-RING_11     RING-like zinc finger
        1.4    9.0  22.2        1.1    9.3  18.5    2.5  2  YL1            YL1 nuclear protein
        2.1    8.2   6.1        6.1    6.7   6.1    1.8  1  zf-MIZ         MIZ/SP-RING zinc finger


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.3   0.0   5.6e-65   6.3e-62      54     349 ..     470     771 ..     447     772 .. 0.86

  Alignments for each domain:
  == domain 1  score: 209.3 bits;  conditional E-value: 5.6e-65
                 TT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS.-EEE--SSHHHH----------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  54 svrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsss.alrvlvyggqkkmkkkntkvapklladyd 151
                  ++GGiLaD+mGLGKT+ +l+l+l +ra  e++++           Li+ P sl++qWe+e+ + ++++ +l v+v++g+k    +      + l +yd
  CCE30843.1 470 TNKGGILADDMGLGKTISTLSLMLSNRA--ESRPK---------TNLIIGPLSLIRQWEEELMKKTNPGhRLSVFVHHGKK----S----TTEDLLKYD 549
                 578*********************7766..33343.........38****************9999775269999*99975....3....456799*** PP

                 EEEE-HHHHHHHT..........................TTS-S-S..-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHH CS
                 xxxxxxxxxxxxxxxx....................xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 152 vvittYdvlsreaelq....................kkrsvlkqve..wkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlk 228
                 vv+ttY ++++e ++                      k   l+  +   +rv+lDE++ +kn ++k+a+a+ +L++ +rw+ltGTP+ n++ +l++Llk
  CCE30843.1 550 VVLTTYGTIASELKRLeqfmeenkdrnidfndracsFKFPLLNPGKafFHRVILDEAQCIKNRNTKTAKACHHLKATYRWCLTGTPMMNGVLELFSLLK 648
                 **********9998889*****************9755555554444489************************************************* PP

                 HH-TTTT--HHHHHHHTHHHHH...HHHHHHHHHHHTT-STTEE---GGGT.....--S---EEEEEEEEE--HHHHHHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 229 fLreepfgekqtfdkllqrpie...aqaekgrsrLlqllqrlmlrrakkdv.....eknlPpkteeiiflklskverksYnrllevlrkkalakllkrs 319
                 fL+++p+++++ f++ +   +      + + + rL+ ll+ +mlrr k+ +       +lP+k+ee+++ +ls  er +Y+ +le +++   +k l + 
  CCE30843.1 649 FLQIKPYNSWENFRQAFGALFGqrgDPKSQAMDRLRALLKAVMLRRKKDSLldgkpILELPRKKEEVVYAELSTDERDFYK-QLEEKAQVLFSKYLREG 746
                 ********************9965555667788******************97654459**********************.66666666666666655 PP

                 ..HHHHHH-HHH-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 320 eaalkssskskekilelllelrqacnhpql 349
                  +  + s+     il lll+lrqac+hp l
  CCE30843.1 747 SIGKNYSN-----ILVLLLRLRQACCHPHL 771
                 55555555.....**************986 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   2.8e-18   3.1e-15       2     111 .]    1040    1154 ..    1039    1154 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 2.8e-18
                  HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSS CS
  Helicase_C    2 kleallell.kleeeggkilifvntidrlek..vklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdl 93  
                  k++ +++ll +  + g+k++if++ +  l+   v + +ek++ k ++++g+++ + r ++ + f+ + +++ +L++ +++  G++++ +n Vi++d+
  CCE30843.1 1040 KVSECMRLLtEIGRTGDKTIIFSQWTLLLDLleVAMWHEKFESKPLRYDGSMSGDRRSDAANTFRdDPKVKvMLVSLRAGNAGLNLTAANRVIIMDP 1136
                  6677788877778999***********887766777799**************************87899999************************ PP

                  SSSHHHHHHHHTTSSSTT CS
  Helicase_C   94 prnvtsyiqriGRtgRag 111 
                   +n+   +q+i+Rt+R+g
  CCE30843.1 1137 FWNPYIEMQAIDRTYRIG 1154
                  ****************97 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   1.9   7.5e-11   8.4e-08       1      39 []     812     861 ..     812     861 .. 0.86
   2 ?    1.7   0.3      0.24   2.7e+02       1      16 [.     860     872 ..     860     872 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 7.5e-11
  zf-RING_UBOX   1 CpIClelftdPlv.lpCGHtFCreCl.........w.elskslegafkCP 39 
                   CpIC+++ + Pl+  pCGH  C++Cl         +  +  +++++ kCP
    CCE30843.1 812 CPICYDVVQSPLFfIPCGHDSCKDCLirisdtamsQnIQEGHESNTAKCP 861
                   ***********5546***********998876654389999999*****9 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.24
  zf-RING_UBOX   1 CpIClelftdPlvlpC 16 
                   Cp+C+  f +P   +C
    CCE30843.1 860 CPVCRGAF-NP-R-KC 872
                   *******9.77.3.46 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   2.3   2.2e-10   2.5e-07       1      30 [.     811     840 ..     811     848 .. 0.92
   2 ?    0.4   0.0      0.53     6e+02      36      40 .]     859     863 ..     849     868 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2.2e-10
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilrs 30 
                 +CpiC+d+ + p+  +pCgH  C++C+ r 
  CCE30843.1 811 ECPICYDVVQSPLFFIPCGHDSCKDCLIRI 840
                 6**************************984 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.53
  zf-C3HC4_2  36 eCPlC 40 
                 +CP+C
  CCE30843.1 859 KCPVC 863
                 77777 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   3.9   3.7e-10   4.1e-07       2      45 ..     809     865 ..     808     868 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.7e-10
                 GSB-TTTSSSBS-.EEETTEEEEEE-HHHHHHHHH.............TT-B-TTT-- CS
  zf-C3HC4_3   2 deeCviClerprn.vvllpCgHlvlCeeCaekllk.............rkkkCpiCrr 45 
                 + eC+iC++  ++  +++pCgH   C++C+ ++ +             +++kCp+Cr 
  CCE30843.1 809 NFECPICYDVVQSpLFFIPCGHD-SCKDCLIRISDtamsqniqeghesNTAKCPVCRG 865
                 679******855537999*****.*********8899**********99*******96 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   3.9e-09   4.4e-06       4     169 ..     452     635 ..     449     637 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.9e-09
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdst 102
                 l+ +Q  a+ ++++k+++  +k g+++   G GKT+  ++l+ + + + ++ k+ +++  +sl+ q++ee++k +++ +   + +v+  kk+   +d  
  CCE30843.1 452 LYRHQGVAL-AWMKKMEAGTNKGGILADDMGLGKTISTLSLMLSNRAE-SRPKTNLIIGPLSLIRQWEEELMKKTNPGHR-LSVFVHHGKKST-TEDLL 546
                 566666665.566788889999********************998886.557999999**********999888887765.555555555555.68888 PP

                 .-SEEEEEHHHHHHTH........HHHTTT-S.....................EEEEETGGGTTS..TTTHHHHHT---SEEEEEESS- CS
      ResIII 103 nkkilvttiqsldadseeeeeeseellrdrfd.....................viiiDEaHrlgak.kswreilekfkeavllglTATp 169
                 + ++++tt+ ++ +++++ e+  ee+++ ++d                      +i DEa  ++   ++  ++  ++k+ ++  lT+Tp
  CCE30843.1 547 KYDVVLTTYGTIASELKRLEQFMEENKDRNIDfndracsfkfpllnpgkaffhRVILDEAQCIKNRnTKTAKACHHLKATYRWCLTGTP 635
                 9***************666555555555555577788899999999999999999*****98888634677778999999999999999 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.7       3.9   4.4e+03       4      19 ..     608     622 ..     606     624 .. 0.56
   2 !   26.7   7.1   3.3e-09   3.7e-06       1      41 []     812     863 ..     812     863 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.9
                 T-S--SS-E.E-TTS- CS
    zf-C3HC4   4 CleeakepnelleCkH 19 
                 C ++  +++ +  C+H
  CCE30843.1 608 CIKNRNTKT-AKACHH 622
                 555555555.666666 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 3.3e-09
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC...........TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks...........rkkvkCPlC 41 
                 CpiC ++++ p  +++C+H  C++C+ +i ++           +++ kCP+C
  CCE30843.1 812 CPICYDVVQSPLFFIPCGHDSCKDCLIRISDTamsqniqegheSNTAKCPVC 863
                 ******************************99999******9999999**** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   6.7     2e-07   0.00023       2      44 .]     811     864 ..     810     864 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2e-07
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerw....lrssst.........CPlCr 44 
                 eCpIC++ ++  + +   pCgH  +++Cl r+    + ++++         CP+Cr
  CCE30843.1 811 ECPICYDVVQ--SPLFFIPCGHDSCKDCLIRIsdtaMSQNIQeghesntakCPVCR 864
                 8****97775..4555669**********66644223333337888899******9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   5.5   4.3e-07   0.00049       1      43 [.     811     864 ..     811     865 .. 0.97

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.3e-07
   zf-RING_5   1 hCnkCfeklskeekfyltsCgHifCekClkkll.............ekeavCpiCr 43 
                 +C++C++ +  +++ ++ +CgH  C++Cl + +              + a+Cp+Cr
  CCE30843.1 811 ECPICYDVV--QSPLFFIPCGHDSCKDCLIRISdtamsqniqegheSNTAKCPVCR 864
                 6********..**********************************99********8 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   6.9   2.8e-06    0.0031       1      42 []     812     863 ..     812     863 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.8e-06
  zf-C3HC4_4   1 CPiCldYLekPv.sleCGhsfClsCisslqkepdgeq.........llCplC 42 
                 CPiC d  + P   ++CGh  C  C+ +++  + +++           Cp+C
  CCE30843.1 812 CPICYDVVQSPLfFIPCGHDSCKDCLIRISDTAMSQNiqeghesntAKCPVC 863
                 ***********7369**********998877665544444455555677777 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05     0.012      40     130 ..    1035    1133 ..    1017    1171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
  ERCC3_RAD25_C   40 vmnpnkfracefLikyhekrgDkiivfsDnvfaLk..eya...kklk.kpy.iyGetseaerlkilqkfkknpkvntifls.kvgDtsiDlPea 125 
                      m + k++ c  L++   + gDk i+fs     L   e+a   +k++ kp+   G++s   r++  ++f+ +pkv+++++s + g++ ++l  a
     CCE30843.1 1035 WMPAAKVSECMRLLTEIGRTGDKTIIFSQWTLLLDllEVAmwhEKFEsKPLrYDGSMSGDRRSDAANTFRDDPKVKVMLVSlRAGNAGLNLTAA 1128
                     577889999999999999**********9776655114441113343133324699************************97789999****** PP

  ERCC3_RAD25_C  126 nvliq 130 
                     n +i 
     CCE30843.1 1129 NRVII 1133
                     98885 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.2   3.4e-05     0.039       1      47 [.     812     867 ..     810     868 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-05
   zf-RING_4   1 cplCdeeldetdkdlkpCeCgyqiClfCyhrileee............egrCPaCreeY 47 
                 cp+C    d   + l+  +Cg+  C +C+ ri +++            +++CP Cr ++
  CCE30843.1 812 CPICY---DVVQSPLFFIPCGHDSCKDCLIRISDTAmsqniqeghesnTAKCPVCRGAF 867
                 55555...44567788889**************9334444555566669*******887 PP

>> zf-4CXXC_R1  Zinc-finger domain of monoamine-oxidase A repressor R1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.76   8.5e+02      48      66 ..     801     819 ..     797     828 .. 0.83
   2 ?    9.7   1.7   0.00087      0.97      35      72 ..     832     873 ..     826     889 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.76
  zf-4CXXC_R1  48 veevaakkeWvCPkCrgiC 66 
                  ve++++ +++ CP C ++ 
   CCE30843.1 801 VERIRTLDNFECPICYDVV 819
                  677788899******9975 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00087
  zf-4CXXC_R1  35 fCekClkn....RygeeveevaakkeWvCPkCrgiCncslcr 72 
                   C++Cl       + ++++e +++++ +CP Crg  n  +c 
   CCE30843.1 832 SCKDCLIRisdtAMSQNIQEGHESNTAKCPVCRGAFNPRKCF 873
                  6999998655557889999***************99988885 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6   0.00054      0.61       1      22 [.     811     830 ..     811     831 .. 0.94
   2 ?   -2.5   0.1       4.2   4.7e+03       2      15 ..     860     873 ..     860     875 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00054
  zf-RING_11   1 eCsICLeefkpgqalfilpCsH 22 
                 eC IC + ++    lf+ pC+H
  CCE30843.1 811 ECPICYDVVQS--PLFFIPCGH 830
                 9********76..9******** PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.2
  zf-RING_11   2 CsICLeefkpgqal 15 
                 C +C   f p ++ 
  CCE30843.1 860 CPVCRGAFNPRKCF 873
                 99**9999998875 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.4   1.6e+03     196     207 ..     186     197 ..     162     256 .. 0.66
   2 ?    9.3  18.5   0.00097       1.1      31     151 ..     896    1019 ..     876    1043 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.4
                 xxxxxxxxxxxx RF
         YL1 196 LaeAketEeeNl 207
                 La+Ak+ E+eN 
  CCE30843.1 186 LARAKQREQENE 197
                 333333333332 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00097
                  xxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1   31 eedDeefeseeeeeeee.............nsDsdfdsdeedeesdeeedeeegekelerqerkkrkkekkkrkaqkkkskkkkkkqkkkkkkkidp 114 
                  ++ D+e es+++e +++              +D  +d+de+  e++ e+++e+g   le  + k+   e+kkr++q+k+  +kkkk+kk k k   +
  CCE30843.1  896 DASDAETESDSDESDSDvddemdevddrgnLKDFVVDDDES--EGKMEDNDEDGLDSLEVLNMKASLLERKKRNQQRKSELEKKKKKKKGKGK---E 987 
                  55666666666665555444444555555566655555554..35666666777777776555555555566665544444444222222222...1 PP

                  .........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  115 .........qakeprpkkkseraswlpaeslltpkrRkssRastve 151 
                           +            + + p     +p + ks R  +++
  CCE30843.1  988 tmsktkgkgK-----------GKGKKPD---VKPHMLKSLRLEAAK 1019
                  1111111110...........1111111...122233344444444 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.1    0.0055       6.1       3      48 ..     810     864 ..     809     866 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0055
                 SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS--.........-B-TTT- CS
      zf-MIZ   3 lkCplslsrikiPvrgekCkHlqCfdlesylelnertet.........WnCPvCs 48 
                  +Cp+ ++ ++ P   + C H  C d+   ++ ++ +++          +CPvC 
  CCE30843.1 810 FECPICYDVVQSPLFFIPCGHDSCKDCLIRISDTAMSQNiqeghesntAKCPVCR 864
                 58************************98766544333333344566669999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1630  (0.0909142); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.95u 0.28s 00:00:01.23 Elapsed: 00:00:00.46
# Mc/sec: 7842.66
//
Query:       CCE30844.1  [L=723]
Description: uncharacterized protein CPUR_04694 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-82  278.1   0.1    4.5e-80  269.6   0.1    2.1  1  Med17     Subunit 17 of Mediator complex


Domain annotation for each model (and alignments):
>> Med17  Subunit 17 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.6   0.1   2.5e-84   4.5e-80      39     458 ..      19     475 ..       2     479 .. 0.89

  Alignments for each domain:
  == domain 1  score: 269.6 bits;  conditional E-value: 2.5e-84
                 -CCHHHCCHHCCCHCCHHHHHHCHHHHHHHCCHHHHHSS-S---GGGTTCHHHHHHHHHGGG...SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
       Med17  39 fgqekLaqliprIlqergefrdlsEesLreeiekekqqkeekdeeeeeeeeeeekkeDaedklltqeefaklrkemiekinlAknesslaLdfisLLlS 137
                   +++La++i+r++++ g frdl+Ee+Lr ei+ ++      d++   e+++ +   +    + +  + + +r+e++++i++A n ++l+Ld +sLLlS
  CCE30844.1  19 RAPKNLAEFISRVNAQAGGFRDLTEEKLRDEIRSRDGLGLAPDSDP--EDVDMSDAGNE---EDQAKDPSLARNEVLKNIEIASNTAMLTLDSLSLLLS 112
                 4689******************************988875444332..22222222222...334568999**************************** PP

                 TCHCCCCHCCSSHHHCCCTHCCHCCCCCHHHH.HHHHSHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTCCCCCCCEEEEECC CS
       Med17 138 kvressaassmSpfLkkvvppgSLnadkvpkp.kktkkeklelevlnkGwklksLneardllkkaaakLkkevekEhkyWkeiqnisnkdvgwklrdks 235
                 k+ +++a+ ++S++L+++v +g+L+ad+++ p +k+ ++ +e+e++++G+ l ++n+ard  +++ + L++eve+E +yW++i  + +k++gw++++ +
  CCE30844.1 113 KQSPTQASLTLSQQLRDMVGIGTLGADRLDEPtAKPPQQPAEQEEVAMGLTLMQINQARDAANETGKFLQREVEAEGRYWRDI--VAVKEAGWAICRMP 209
                 ********************************88999999*******************************************..************** PP

                 CCCCCEEEECCCCCHCC-..SEEEEEEEECTTTCCEEEC-SSSSSSEEEEEEEEEC.TTTSSEEEEEE----.SS----TTCHHHHHHHHHHHHHHHHH CS
       Med17 236 tgerslgvkygyedsgstfkdrgiAeLrrndegsklllvpllgskekflrVriftkieseddyilsgessld.eslkesdsdirkqieeakktiFekEL 333
                 +++++l+vk+g+++++ +fk++g+A++ r ++g + l+ + lg  ++ l V        e++++++g+s  +  +  ++ +++ +++ ea++tiF +EL
  CCE30844.1 210 KERHTLAVKFGFSEAAAEFKNNGLAPMNRGPDGFIDLDLGGLGDVSEGLVVAY------EKNGKVVGRSVPRrRKAPNDGASLVSRVLEARNTIFSQEL 302
                 *****************************************************......99********999667778889****************** PP

                 HHHHHHHHHHCCCCTEEECCCCEEEEC.SSCCCEEEEECCCCEGGGTSTTTTTT...TTHHHHHHCHH............................... CS
       Med17 334 fyelkkEaqqLisygVeiennkiviel.pnekleielvslddsslvnheqdapk...sndkranlili............................... 397
                 ++el  Ea++L +y+V++++++i++ +  ++ + +elv l+++s+  +e  + +   s++  +n  +                                
  CCE30844.1 303 WHELVCEARTLAAYDVKLQGSTITFRVdDSSSIILELVALESHSTMDDESSSDNgsgSDNNTSNKNHYdesnihmnndsndndfhdnsisnninntsdt 401
                 ***************************888999*****9999999888876666777666666666667888888************************ PP

                 ..............HHHHHHHHHHHHHHHHCCTCCCHCTSSSSSCHHCTTTCHHHHHHHHHHHHHHHHHHHHHCC CS
       Med17 398 ..............tlrllLvvifkknlrkrlasskttakasrslpkdillLrPilgklrhenyvdllrkilkkl 458
                               +l++lL++++++n   r+ +     +++r  ++ ++lLrP++++++  ++++++++++ ++
  CCE30844.1 402 sdtnyttmaetislSLHILLSYAHRYNELMRIRPVPPHISRTRG-QQAYALLRPVIARIMSIRSIQECTEFIGNM 475
                 *******************************5555545566666.5589***********999999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4972.29
//
Query:       CCE30845.1  [L=840]
Description: probable 6-phosphofructokinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-190  631.7   0.1   1.4e-105  352.7   0.4    2.1  2  PFK       Phosphofructokinase


Domain annotation for each model (and alignments):
>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.7   0.4  7.9e-110  1.4e-105       1     283 [.      61     371 ..      61     372 .. 0.96
   2 !  277.0   0.0   9.4e-87   1.7e-82       1     283 [.     453     749 ..     453     750 .. 0.91

  Alignments for each domain:
  == domain 1  score: 352.7 bits;  conditional E-value: 7.9e-110
                 EEEEEEESS--TTHHHHHHHHHHHHHHTT-EEEEETTHHHHHHTT..-EEEE-SGGGTT-TT--S-TT-----GGGGSHHHHHHHHHHHHHHT--EEEE CS
         PFK   1 riailtsGGdapGmNaairavvrtaikkglevygireGfeGliee..eiekltledvsgilsegGtiLgsaRskefkeregrkkaaenlkklgidaLvv 97 
                 +ia++tsGGd+pGmNa++ravvr+ai+ g++ ++++eG+eGl+++   i++++++dv+g+lsegGt++g+aR+  f er gr +aa+n++ +gidaL++
  CCE30845.1  61 KIAVMTSGGDSPGMNAVVRAVVRMAIHLGCDAFAVYEGYEGLVRGgdFIKQMDWHDVRGWLSEGGTLIGTARCMAFYERPGRLTAAKNMVLNGIDALII 159
                 7*******************************************9966679************************************************ PP

                 EESHHHHHHHHHHHHT..T.....................--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHHT-EEEEEES-TT-TH CS
         PFK  98 iGGdgslkganklseerkgllee.................lkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstakshkrvfvvEvmGrncGw 179
                 +GGdgsl+ga+++++e+++ll+e                 l+ivgi+++idND+ gtd tiG+++Al++i+e++d ++ ta+sh+r+fv+EvmGr+cGw
  CCE30845.1 160 CGGDGSLTGADRFRSEWPSLLQElvankeltksqiapykhLNIVGIVGSIDNDLSGTDATIGCYSALSRICEMVDYIEATASSHSRAFVIEVMGRHCGW 258
                 ********************999**************************************************************************** PP

                 HHHHHHHHHT-SEEE-TTS---HH...HHHHHHHHHHT.T-S-EEEEEESSS..S-.....HHHHHHHHHHHH....SS-EEEEE-GGGGG-S---HHH CS
         PFK 180 lAlmaglaggadvilipEepfdie...eliekikklrkkgkkksiivvaEgakdkeg..iiaeelakeieekt....gievrvtvlGhlqrGgspsafD 269
                 lAl ag+a+gad+++ipE+p + +   +++  ++++rk gk+k+i++vaEga+dk+g  i+ ee+ +++++kt    g+++r+t+lGh+qrGg++ a+D
  CCE30845.1 259 LALLAGVATGADFVFIPERPQEHDwreDMSLVVNRHRKMGKRKTIVIVAEGARDKDGnkISPEEIRDLLSDKTegglGLDTRITTLGHVQRGGTAVAYD 357
                 ********************99989999999999999****************88888888899999997766333356******************** PP

                 HHHHHHHHHHHHHH CS
         PFK 270 rilatrlGikavel 283
                 ri++t+ G++av++
  CCE30845.1 358 RIISTLQGVEAVKA 371
                 ************97 PP

  == domain 2  score: 277.0 bits;  conditional E-value: 9.4e-87
                 EEEEEEESS--TTHHHHHHHHHHHHHHTT-EEEEETTHHHHHHTT.......-EEEE-SGGGTT-TT--S-TT-----GGGGSHHHHHHHHHHHHHHT- CS
         PFK   1 riailtsGGdapGmNaairavvrtaikkglevygireGfeGliee.......eiekltledvsgilsegGtiLgsaRskefkeregrkkaaenlkklgi 92 
                 +i+ +++G++a GmNaa+r++v +++++g+e+++i++Gf G+ ++       +++++++ +v+g++s+gG+ +g++R  +   ++g++ +a+ ++++++
  CCE30845.1 453 KIGFINVGAPAGGMNAAVRGAVAHCLSRGHEPIAIHNGFAGFARHhddkplgSVRPFNWLEVDGWASKGGSEIGTNRELPE--ESGMELIANLIEQYEF 549
                 79****************************************7775555555666888**********************5..589************* PP

                 -EEEEEESHHHHHHHHHHHHT..T.....--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEES-TT-THHHHHHHHHHT CS
         PFK  93 daLvviGGdgslkganklseerkgllee.lkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstaksh.krvfvvEvmGrncGwlAlmaglagg 189
                 daL++iGG+++++ +++l+++r+++++  ++++++P+Ti+N++pgt+y++G+dT+ln +v ++dk+k++a+++ +rvfv+E++G++cG++A+ +gl++g
  CCE30845.1 550 DALFIIGGFEAFHSVSQLRKARDKYPSLcIPVCLLPATISNNVPGTEYSLGSDTCLNELVSYCDKIKQSASATrRRVFVIETQGGRCGYVATLSGLSVG 648
                 **********************9998878********************************************9************************* PP

                 -SEEE-TTS---HHHHHHHHHHHH.....T.T-S-E....EEEEESSS..S-...HHHHHHHH.HHHH.SS-EEEEE-GGGGG-S---HHHHHHHHHHH CS
         PFK 190 advilipEepfdieeliekikklr.....kkgkkks....iivvaEgakdkegiiaeelakei.eekt.gievrvtvlGhlqrGgspsafDrilatrlG 277
                 a +++ipEe ++++ l +++++l+     ++g+  s    +i+v+E+a++   + a+ +a+ i ee+   +e+r +++Gh+q+Gg ps++Dr+ a rl+
  CCE30845.1 649 ASAVYIPEEGISLDMLHADVNHLKdvfkkDRGQ--SragrLILVNEKASK--VYDAKLIASIIrEEAHdRFESRESIPGHVQQGGIPSPMDRCRAVRLA 743
                 **********************99888542233..13478********85..3458888888844433146**************************** PP

                 HHHHHH CS
         PFK 278 ikavel 283
                 ik++++
  CCE30845.1 744 IKCIQH 749
                 ***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 5873.16
//
Query:       CCE30846.1  [L=574]
Description: uncharacterized protein CPUR_04696 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3857.77
//
Query:       CCE30847.1  [L=875]
Description: probable KAP95 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-21   73.4  10.2    0.00035   20.6   0.0   10.4 10  HEAT           HEAT repeat
    7.3e-13   48.7   9.7    0.00049   20.4   0.0    6.4  7  HEAT_2         HEAT repeats
    3.6e-12   46.5  10.7    2.8e-09   37.3   0.0    7.3  9  HEAT_EZ        HEAT-like repeat
    2.2e-10   40.3   6.3      5e-09   36.0   1.6    3.8  3  IBN_N          Importin-beta N-terminal domain
      3e-07   29.2   6.9      0.042   12.2   0.0    5.3  7  DRIM           Down-regulated in metastasis
    0.00017   21.2   1.6        1.4    8.4   0.1    5.0  6  CLASP_N        CLASP N terminal
     0.0024   17.8   0.4         21    5.0   0.0    4.7  4  DUF3385        Domain of unknown function (DUF3385)
     0.0026   18.3   3.2         23    5.7   0.0    6.1  6  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
     0.0029   17.3   0.5        9.4    5.8   0.0    4.5  4  NUC173         NUC173 domain
     0.0055   16.7   3.7         11    6.2   0.0    5.8  5  Arm            Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.012   15.1   0.4          6    6.3   0.0    3.8  3  Tti2           Tti2 family
       0.22   11.9   1.1         27    5.2   0.1    3.5  2  Cohesin_HEAT   HEAT repeat associated with sister chromatid c


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       8.8   1.3e+04       4      22 ..       8      26 ..       6      33 .. 0.72
   2 ?    4.2   0.1     0.044        66       4      25 ..      43      65 ..      40      67 .. 0.84
   3 ?   -1.4   0.0       2.8   4.1e+03      10      25 ..      89     104 ..      83     105 .. 0.80
   4 !   10.2   0.0   0.00051      0.76       1      29 [.     134     162 ..     134     163 .. 0.97
   5 ?    5.0   0.0     0.025        37      12      26 ..     192     206 ..     183     211 .. 0.88
   6 ?    4.4   0.0     0.036        54       1      28 [.     224     251 ..     224     254 .. 0.93
   7 !   18.1   0.0   1.5e-06    0.0022       2      30 ..     372     400 ..     371     400 .. 0.92
   8 !   20.6   0.0   2.3e-07   0.00035       2      31 .]     414     443 ..     413     443 .. 0.93
   9 ?   -0.7   0.1       1.6   2.4e+03      19      29 ..     473     483 ..     473     485 .. 0.87
  10 ?    5.3   0.0      0.02        29      10      30 ..     514     534 ..     507     545 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.8
                HHHHHHT-SSHHHHHHHHH CS
        HEAT  4 lllkllsDpspeVReaAak 22
                 +l++  +p+++ R aA +
  CCE30847.1  8 QVLTNSLSPDANLRNAAEQ 26
                5677777999999999855 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.044
                HHHHHHT-.SSHHHHHHHHHHHH CS
        HEAT  4 lllkllsD.pspeVReaAakaLg 25
                l+++l +D  ++++R+aA +aL 
  CCE30847.1 43 LVQELANDqADASIRMAAGLALK 65
                689999**77888*****99996 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.8
                 T-SSHHHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAakaLg 25 
                  D+ +++R+ ++++L 
  CCE30847.1  89 DDTKARIRQLTLQTLS 104
                 689999*****99996 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00051
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l+P l+k+ +D + ++ +a++ ++g ++e
  CCE30847.1 134 LMPYLVKNVTDGADNQKQASLTTIGYICE 162
                 8***************************8 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.025
                 SSHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLga 26 
                 +s eVR +A+ aLg+
  CCE30847.1 192 TSNEVRLSAITALGD 206
                 689**********97 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.036
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 ++ +++++ + +++++ + A+ +L +++
  CCE30847.1 224 IMQVVCEATQAEDSRIQQGAFGCLNRIM 251
                 7999*********************997 PP

  == domain 7  score: 18.1 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaev 30 
                 l ++  +l++++++ R+aA+ a+ga++e+
  CCE30847.1 372 LQFVEANLRSENWHFRDAAVSAFGAIMEG 400
                 7889999*******************985 PP

  == domain 8  score: 20.6 bits;  conditional E-value: 2.3e-07
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaevl 31 
                 lP+l++++ Dp+ +VR+++a +Lg+l   +
  CCE30847.1 414 LPVLINMMDDPDLQVRDSTAFTLGRLTYSC 443
                 8************************98765 PP

  == domain 9  score: -0.7 bits;  conditional E-value: 1.6
                 HHHHHHHHHHH CS
        HEAT  19 aAakaLgalae 29 
                 ++++aL +lae
  CCE30847.1 473 SCCWALMNLAE 483
                 59*******98 PP

  == domain 10  score: 5.3 bits;  conditional E-value: 0.02
                 T-SSHHHHHHHHHHHHHHHHC CS
        HEAT  10 sDpspeVReaAakaLgalaev 30 
                 +D + +VR aA + L  ++++
  CCE30847.1 514 TDADTSVRTAAYEVLNVFVQN 534
                 699************999986 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   2.4    0.0011       1.6       7      87 ..      13     103 ..       6     104 .. 0.71
   2 ?    5.4   0.2     0.016        23       3      56 ..     137     205 ..      82     205 .. 0.53
   3 ?    5.7   0.0     0.013        19      11      57 ..     191     249 ..     180     257 .. 0.71
   4 ?   -1.7   0.0       2.6   3.9e+03      27      44 ..     321     340 ..     318     352 .. 0.71
   5 !   20.4   0.0   3.3e-07   0.00049      11      87 ..     343     436 ..     327     437 .. 0.70
   6 !    9.3   0.0   0.00097       1.5      31      69 ..     412     458 ..     407     463 .. 0.56
   7 !    9.6   0.0    0.0008       1.2      27      71 ..     498     544 ..     475     558 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0011
      HEAT_2   7 alendpdpevrraairaLgrignp...ealpaLve.lled.edpavRraaaeaLg.......aigd.pealpaLkellddddddvvReaAaeaL 87 
                  l  +pd ++r aa ++L + ++     +l++Lv+ l++d +d+ +R+aa  aL         +++ +   ++L++  ddd+++++R+ ++++L
  CCE30847.1  13 SL--SPDANLRNAAEQQLNQAAENnfpLYLATLVQeLANDqADASIRMAAGLALKnaftardFMRRqELQTKWLQQ-IDDDTKARIRQLTLQTL 103
                 33..6899999999999998776423255777777588774799**********6433323222332557899999.89999*****9998887 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.016
      HEAT_2   3 aLlqalendpdpevrraairaLgrignp..............ealpaLvell..ededpavRraaaeaLg 56 
                 +L++ + +d  ++ ++a + ++g i +                +l a+v+ +  e ++ +vR  a++aLg
  CCE30847.1 137 YLVKNV-TDGADNQKQASLTTIGYICESpdselrlalisysnAILTAVVQGArkEETSNEVRLSAITALG 205
                 334444.444444455555555543222233333333333334455555555322334555555555554 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.013
      HEAT_2  11 dpdpevrraairaLg........rignp....ealpaLvellededpavRraaaeaLga 57 
                   + evr  ai aLg        +++++     +++ + e+ + ed+++++ a   L +
  CCE30847.1 191 ETSNEVRLSAITALGdslefvssNFKHEgernYIMQVVCEATQAEDSRIQQGAFGCLNR 249
                 56778999999999988877777666665555557777777777888888888777766 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2.6
      HEAT_2  27 ignpealpaLvell..eded 44 
                  +  e++p L+ ll  +ded
  CCE30847.1 321 VAASEVVPVLLVLLtkQDED 340
                 55667888888888433443 PP

  == domain 5  score: 20.4 bits;  conditional E-value: 3.3e-07
      HEAT_2  11 dpdpevrraairaLg........rignpealpaLvellededpavRraaaeaLgai..g......d...pealpaLkellddddddvvReaAaeaL 87 
                 d ++++ raa ++L         +i +  +l+ +   l++e+++ R aa+ a gai  g      d   ++alp+L  ++d d+d  vR ++a +L
  CCE30847.1 343 DDEYNISRAAYQCLQlysqavgaSIIT-PVLQFVEANLRSENWHFRDAAVSAFGAImeGpdekvlDpivKQALPVLINMMD-DPDLQVRDSTAFTL 436
                 566677888888888444322222222.3688888899*****************9652434444134477*********6.56777788777655 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.00097
      HEAT_2  31 ealpaLvellededpavRraaaeaLgai........gdpealpaLke 69 
                 +alp L+++++d+d  vR   a +Lg++        +  + lpaL e
  CCE30847.1 412 QALPVLINMMDDPDLQVRDSTAFTLGRLtyscaesiDPAQHLPALIE 458
                 56777777777777777777777777552222211123444555544 PP

  == domain 7  score: 9.6 bits;  conditional E-value: 0.0008
      HEAT_2  27 ignpealpaLvell..ededpavRraaaeaLgaigdpealpaLkell 71 
                 i+ ++a+ +L+++   +d+d+ vR aa e L  +  ++a ++L+ ++
  CCE30847.1 498 IHFTQAVSTLLNVTsrTDADTSVRTAAYEVLNVFVQNAATDSLQTIA 544
                 4556999*****99878999***********9999999999998866 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       3.5   5.3e+03      30      52 ..      40      64 ..      18      66 .. 0.55
   2 ?   -1.9   0.0       3.5   5.3e+03      38      53 ..      88     104 ..      84     105 .. 0.81
   3 ?    5.8   0.0     0.014        20       6      55 .]     113     160 ..     112     160 .. 0.82
   4 ?   -1.0   0.0       1.8   2.7e+03      43      53 ..     195     205 ..     179     214 .. 0.75
   5 ?   -0.3   0.0       1.1   1.6e+03      26      42 ..     323     340 ..     319     342 .. 0.79
   6 !   37.3   0.0   1.9e-12   2.8e-09       1      55 []     384     439 ..     384     439 .. 0.97
   7 ?    1.9   0.0      0.22   3.3e+02       7      48 ..     474     524 ..     472     528 .. 0.67
   8 ?   -3.2   0.0       8.8   1.3e+04       7      37 ..     626     653 ..     624     668 .. 0.48
   9 ?   -2.8   0.0       6.5   9.7e+03      22      40 ..     680     698 ..     677     701 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.5
     HEAT_EZ 30 lpaLl.alLnddsd.eVRaaAagaL 52
                l+ L+  l nd  d ++R aA  aL
  CCE30847.1 40 LATLVqELANDQADaSIRMAAGLAL 64
                3344433334433347788887776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.5
     HEAT_EZ  38 nddsd.eVRaaAagaLg 53 
                  dd + ++R+ ++ +L+
  CCE30847.1  88 DDDTKaRIRQLTLQTLS 104
                 67777899******998 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.014
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 aAa +++++a  + el + l ++++p+L++  +d  d+ ++a++ ++g +
  CCE30847.1 113 AAAQVVSSIA--AIELPRNLWTDLMPYLVKNVTDGADNQKQASLTTIGYI 160
                 5666776666..56677777789***********************9976 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.8
     HEAT_EZ  43 eVRaaAagaLg 53 
                 eVR  A+ aLg
  CCE30847.1 195 EVRLSAITALG 205
                 55555555555 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 1.1
     HEAT_EZ  26 vpeilpaLlalL.nddsd 42 
                  +e++p Ll lL + d+d
  CCE30847.1 323 ASEVVPVLLVLLtKQDED 340
                 6799*****999666666 PP

  == domain 6  score: 37.3 bits;  conditional E-value: 1.9e-12
     HEAT_EZ   1 wrvRraAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 w  R aA++a+G+ ++g     l p v+++lp L++++ d++  VR  +a +Lg+l
  CCE30847.1 384 WHFRDAAVSAFGAiMEGPDEKVLDPIVKQALPVLINMMDDPDLQVRDSTAFTLGRL 439
                 7789************************************999***********97 PP

  == domain 7  score: 1.9 bits;  conditional E-value: 0.22
     HEAT_EZ   7 AawaLGr....laggepellqp...lvpeilpaLlalL.nddsd.eVRaaA 48 
                 ++waL++     ag+ +   +p   + ++++  Ll+   ++d d +VR+aA
  CCE30847.1 474 CCWALMNlaerFAGEYGAPSNPltiHFTQAVSTLLNVTsRTDADtSVRTAA 524
                 578887763354444444433366688899999996655888888999998 PP

  == domain 8  score: -3.2 bits;  conditional E-value: 8.8
     HEAT_EZ   7 AawaLGr.laggepellqplvpeilpaLlalL 37 
                  ++aL++ +++  + ++     +  p+L ++L
  CCE30847.1 626 SISALSAaMEQDFGKYMD----AFSPFLYNAL 653
                 556665555533333333....3333333333 PP

  == domain 9  score: -2.8 bits;  conditional E-value: 6.5
     HEAT_EZ  22 lqplvpeilpaLlalLndd 40 
                  qp+ +  + +Ll+ L+++
  CCE30847.1 680 SQPFCDNFMNYLLNNLRSP 698
                 58999999*****999887 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   1.6   3.3e-12     5e-09       1      73 [.      24     104 ..      24     105 .. 0.92
   2 ?    2.1   0.0      0.12   1.8e+02       4      39 ..     169     204 ..     166     223 .. 0.85
   3 ?    1.8   0.1      0.15   2.3e+02      11      45 ..     500     534 ..     497     546 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 3.3e-12
                 HHHHHHHHHC..STCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHC........GSXHHHHHHHHHHHHHHHH CS
       IBN_N   1 AekqLkqlek..qpgflsallqilanseselevRqlAalyLknlitkhWsdeeekq........slpseekeqIrnnllnllg 73 
                 Ae+qL+q+++  +p +l +l+q lan++ + ++R++A+l Lkn  t++  d  + q        ++++++k+ Ir+  l++l 
  CCE30847.1  24 AEQQLNQAAEnnFPLYLATLVQELANDQADASIRMAAGLALKNAFTAR--DFMRRQelqtkwlqQIDDDTKARIRQLTLQTLS 104
                 9*******999************************************9..544444589999***************999986 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.12
                 HHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHH CS
       IBN_N   4 qLkqlekqpgflsallqilanseselevRqlAalyL 39 
                 +L   ++++  l a++q + ++e+++evR++A++ L
  CCE30847.1 169 RLALISYSNAILTAVVQGARKEETSNEVRLSAITAL 204
                 56667778888999999999************9988 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.15
                 STCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHH CS
       IBN_N  11 qpgflsallqilanseselevRqlAalyLknlitk 45 
                 + +++s+ll++ ++++ + +vR +A  +L  ++++
  CCE30847.1 500 FTQAVSTLLNVTSRTDADTSVRTAAYEVLNVFVQN 534
                 678999********99999*****98777766665 PP

>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.41   6.1e+02     532     589 ..      17      70 ..      11     118 .. 0.69
   2 ?    3.5   0.0     0.012        18     317     464 ..     168     358 ..     138     377 .. 0.57
   3 !   12.2   0.0   2.8e-05     0.042     536     613 ..     390     462 ..     386     471 .. 0.75
   4 !    6.6   0.1    0.0013         2     567     617 ..     512     556 ..     492     562 .. 0.80
   5 !    5.8   0.1    0.0024       3.5     181     228 ..     566     614 ..     555     637 .. 0.80
   6 ?   -3.2   0.0       1.3   1.9e+03     197     223 ..     668     694 ..     659     699 .. 0.87
   7 ?   -3.2   0.0       1.3   1.9e+03     367     487 ..     751     795 ..     721     810 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.41
        DRIM 532 DfdrRlsAFkkineekyksltleqwlpllhnclffirdeeelsirsnAsellkrfiea 589
                 D + R +A +++n+  ++++ l   l  l++ l   +d+++ sir +A  +lk  ++a
  CCE30847.1  17 DANLRNAAEQQLNQAAENNFPL--YLATLVQELA--NDQADASIRMAAGLALKNAFTA 70 
                 5555666666666665444333..3333444444..6999999999999999887665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.012
        DRIM 317 laplLakydssvlpavielLsapkakesVvefvldivenllkladeeeeee..................edeeeigselLlphvsslLeylsalleksa 397
                 l  +L +y+ ++l+av++   ++ ++++V  ++++ +   l+  +++ + e                  ++ ++     L  +++   e+++ ++ek  
  CCE30847.1 168 LRLALISYSNAILTAVVQGARKEETSNEVRLSAITALGDSLEFVSSNFKHEgernyimqvvceatqaedSRIQQGAFGCLNRIMALYYENMRFYMEKAL 266
                 556666677777777777777777777777777776666666555554444556666666665555544222233333344444444444444443332 PP

        DRIM 398 as......kkdkskellereleiLsrl..aplvedseqas...................sLldlllplLrkpsrrvsektkvelLkilenllrl 464
                         k+d ++++++ ++e+ s +   ++  ++++++                   +++ +ll lL+k+++   +  + ++ ++  + l+l
  CCE30847.1 267 FGltilgmKSD-DEDVAKLAVEFWSTVceEEYSIEDDNSMvesndqmrpfynfarvaasEVVPVLLVLLTKQDEDAADD-EYNISRAAYQCLQL 358
                 22444443333.4556666666666665544444444444455555556666666666666666666666655444433.55555555555555 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 2.8e-05
        DRIM 536 RlsAFkkinee.kyksltl..eqwlpllhnclffirdeeelsirsnAsellkrfieaaaskseeeps..kleleellkdillp 613
                  +sAF++i+e  ++k l++  +q+lp+l n++     + +l++r++ +++l r+   +a++ +  +   +      l + l++
  CCE30847.1 390 AVSAFGAIMEGpDEKVLDPivKQALPVLINMMD----DPDLQVRDSTAFTLGRLTYSCAESIDPAQHlpA------LIESLFK 462
                 579********8667788888*********987....99***************9999987655532321......3333333 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0013
        DRIM 567 irdeeelsirsnAsellkrfieaaaskseeepskleleellkdillpalkr 617
                  r++++ s+r++A e+l+ f++ aa+ s ++  ++     l+d++l+ l++
  CCE30847.1 512 SRTDADTSVRTAAYEVLNVFVQNAATDSLQT-IAS-----LSDVILKRLEE 556
                 4899*********************987776.456.....99999998876 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.0024
        DRIM 181 dleevlplrr.qlgflnlledvlkelgsklapflpkllklllyclaaaq 228
                 ++e+ ++l+  q ++ ++l+ +++ l +++ap  ++++++ll +l+++ 
  CCE30847.1 566 SVEDKITLEEmQNSLCTVLQAIITRLDKEVAPEGDRIMHTLLRILNTVG 614
                 5555566555166889**************************9998875 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 1.3
        DRIM 197 lledvlkelgsklapflpkllklllyc 223
                 l++d+ + +g++ +pf +  ++ ll  
  CCE30847.1 668 LVSDITRSMGERSQPFCDNFMNYLLNN 694
                 8999******************99965 PP

  == domain 7  score: -3.2 bits;  conditional E-value: 1.3
        DRIM 367 e...................edeeeigselLlphvsslLeylsalleksaaskkdkskellereleiLsrlaplvedseqassLldlllplLrkpsrrv 446
                                       +   ++++L++++s++ + l+                                                        
  CCE30847.1 751 VdyvvslregimdawggiigAMKISNKTHILQQYISTIFNLLG-------------------------------------------------------- 793
                 2444444444444445555533334555555555555555444........................................................ PP

        DRIM 447 sektkvelLkilenllrlydedevdlpekllktlsslfsrl 487
                                                         +
  CCE30847.1 794 ---------------------------------------LI 795
                 .......................................33 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1   0.00094       1.4      87     226 ..     404     554 ..     396     555 .. 0.70
   2 ?    4.2   0.2     0.018        27      61     112 ..     516     567 ..     496     578 .. 0.66
   3 ?    4.4   0.0     0.016        23      70     104 ..     577     611 ..     572     638 .. 0.88
   4 ?    2.2   0.0     0.076   1.1e+02      68     103 ..     660     695 ..     655     699 .. 0.92
   5 ?   -3.7   0.0       4.7   7.1e+03      63     100 ..     755     793 ..     751     801 .. 0.65
   6 ?   -4.1   0.0       6.5   9.7e+03     152     165 ..     832     845 ..     829     864 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00094
     CLASP_N  87 q.ldpmveillptLlkllgdtKkiisqnanqalaallsnas....fsprilqvlsvalqd..KnvqpReysaiwLkilltrfe......shkskleasl 172
                 + ldp v++ lp+L++++ d    ++ +++ +l  l  ++       +++  ++++++++   nv++   ++  L +l +rf+      s+  +     
  CCE30847.1 404 KvLDPIVKQALPVLINMMDDPDLQVRDSTAFTLGRLTYSCAesidPAQHLPALIESLFKGllSNVKMAPSCCWALMNLAERFAgeygapSNPLT----I 498
                 349999***************************9998888711112344455666666664447777777777788899999954432222222....2 PP

     CLASP_N 173 lldliekslkkgl..eDanptVRetaRstfweffkvwPsrAksllssldpkvrkal 226
                  + +++ +l  +   +Da+++VR +a +++  f +++ + + + + sl+  + k l
  CCE30847.1 499 HFTQAVSTLLNVTsrTDADTSVRTAAYEVLNVFVQNAATDSLQTIASLSDVILKRL 554
                 3344444444433227************9999999999999988888887777766 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.018
     CLASP_N  61 alssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisq 112
                 a +s+rt+    +  ++++ a    + ++++++ +l+ L + +g + +++s 
  CCE30847.1 516 ADTSVRTAAYEVLNVFVQNAATDSLQTIASLSDVILKRLEETIGLQSQVVSV 567
                 3456666666666666666666666666666666666666666666666665 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.016
     CLASP_N  70 sstgchllkelaiqlkeqldpmveillptLlkllg 104
                  + +c +l+ ++  l ++++p  ++++ tLl+ l 
  CCE30847.1 577 QNSLCTVLQAIITRLDKEVAPEGDRIMHTLLRILN 611
                 5789***************************9875 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.076
     CLASP_N  68 tlsstgchllkelaiqlkeqldpmveillptLlkll 103
                 +l+s ++ l++++++  +e+ +p+++++++ Ll+ l
  CCE30847.1 660 SLCSMAIGLVSDITRSMGERSQPFCDNFMNYLLNNL 695
                 6999****************************9876 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 4.7
     CLASP_N  63 ssLrttlsstgchllkelaiqlkeq.ldpmveillptLl 100
                  sLr  ++ + + ++  + i +k++ l++++  ++++L 
  CCE30847.1 755 VSLREGIMDAWGGIIGAMKISNKTHiLQQYISTIFNLLG 793
                 566777777777777777777777766666777776665 PP

  == domain 6  score: -4.1 bits;  conditional E-value: 6.5
     CLASP_N 152 iwLkilltrfeshk 165
                  wLk+++++ ++++
  CCE30847.1 832 DWLKTMIKQTKTNR 845
                 58888888887433 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.22   3.2e+02     123     148 ..     173     196 ..      74     207 .. 0.69
   2 ?   -0.1   0.0      0.52   7.7e+02     103     142 ..     386     426 ..     328     441 .. 0.65
   3 ?    4.2   0.2     0.025        37      96     156 ..     569     630 ..     511     635 .. 0.77
   4 ?    5.0   0.0     0.014        21      94     142 ..     652     700 ..     641     716 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.22
     DUF3385 123 vpfLdqiipallsvirtteesnlref 148
                 +++ + i+ a+++  r+ e+   +e+
  CCE30847.1 173 ISYSNAILTAVVQGARKEET--SNEV 196
                 44555555555555553322..2222 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.52
     DUF3385 103 hhaavveaimnifktlglkc.vpfLdqiipallsvirttee 142
                  + a+v+a   i++  + k+  p+++q +p l++++ + + 
  CCE30847.1 386 FRDAAVSAFGAIMEGPDEKVlDPIVKQALPVLINMMDDPDL 426
                 34567777777777777777667777777777777776655 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.025
     DUF3385  96 kdpslsshhaavveaimnifktlglkcvpfLdqiipallsvirtte.esnlrefllqqLatL 156
                 ++ +l++++++  +++  i++ l+ ++ p  d+i+++ll++++t   +s++ e ++  ++ L
  CCE30847.1 569 DKITLEEMQNSLCTVLQAIITRLDKEVAPEGDRIMHTLLRILNTVGgKSSVPEAVFASISAL 630
                 4456778888888999999999*******************998653456667777666655 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.014
     DUF3385  94 ilkdpslsshhaavveaimnifktlglkcvpfLdqiipallsvirttee 142
                  l ++   s  ++++  +  i +++g ++ pf d+ ++ ll+ +r+ + 
  CCE30847.1 652 ALGNQEEPSLCSMAIGLVSDITRSMGERSQPFCDNFMNYLLNNLRSPTL 700
                 555555556778999999**************************97653 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.41   6.1e+02      25      67 ..     221     263 ..     167     290 .. 0.65
   2 ?    1.8   0.0      0.24   3.6e+02      51      88 ..     315     352 ..     299     361 .. 0.88
   3 ?    3.4   0.0     0.079   1.2e+02      19      44 ..     403     429 ..     363     463 .. 0.80
   4 ?    5.7   0.0     0.015        23      33      75 ..     510     552 ..     493     559 .. 0.81
   5 ?   -3.1   0.0       8.5   1.3e+04      12      34 ..     663     693 ..     660     697 .. 0.50
   6 ?   -2.4   0.0       5.2   7.7e+03      59      80 ..     777     799 ..     771     802 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.41
  Vac14_Fab1_bd  25 leeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlklln 67 
                     + i+++v ++ + +dsr+   a  +l  i+    +++  +++
     CCE30847.1 221 RNYIMQVVCEATQAEDSRIQQGAFGCLNRIMALYYENMRFYME 263
                    4556666666666667666666666666666655555555555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.24
  Vac14_Fab1_bd  51 lyniakvakgevlkllneifdalvklvaDsdesvksga 88 
                    +yn a+va +ev+ +l  +++   + +aD + ++ ++a
     CCE30847.1 315 FYNFARVAASEVVPVLLVLLTKQDEDAADDEYNISRAA 352
                    7******************9999999999999998776 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.079
  Vac14_Fab1_bd  19 kk.ikeyleeivkpvlkcfsDkdsrvR 44 
                    +k +++++++ +++++++++D d +vR
     CCE30847.1 403 EKvLDPIVKQALPVLINMMDDPDLQVR 429
                    444677888888888999999999888 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.015
  Vac14_Fab1_bd  33 lkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvk 75 
                    +++ +D+d+ vR  a E l   ++ a ++ l+++ ++ d++ k
     CCE30847.1 510 VTSRTDADTSVRTAAYEVLNVFVQNAATDSLQTIASLSDVILK 552
                    34568*****************************999998876 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 8.5
  Vac14_Fab1_bd  12 avaialekk........ikeyleeivkpvlk 34 
                    ++ai+l ++        ++++++++++ +l+
     CCE30847.1 663 SMAIGLVSDitrsmgerSQPFCDNFMNYLLN 693
                    5555555542222222266666666666665 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 5.2
  Vac14_Fab1_bd  59 kgevlk.llneifdalvklvaDs 80 
                    k+++l+ ++++if+ l  +++D+
     CCE30847.1 777 KTHILQqYISTIFNLLGLIASDT 799
                    44555448999999998888886 PP

>> NUC173  NUC173 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.5   2.2e+03      26      71 ..     350     399 ..     327     410 .. 0.67
   2 !    5.8   0.0    0.0063       9.4     162     202 ..     443     483 ..     437     484 .. 0.93
   3 ?    3.6   0.1     0.031        47       5      74 ..     523     592 ..     519     614 .. 0.81
   4 ?    1.8   0.0      0.11   1.6e+02      21      87 ..     665     735 ..     659     744 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.5
      NUC173  26 salfeklgkrs....spllkkilktlgelreseefelkkeadevigaair 71 
                  a+++ l+  s    + +++++l+ + +   se+ +++ +a +++ga+++
  CCE30847.1 350 RAAYQCLQLYSqavgASIITPVLQFVEANLRSENWHFRDAAVSAFGAIME 399
                 44444444444223333478888888777777777888888888888876 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0063
      NUC173 162 celptDlkesfkklaklLsnaLyeqpeLrltickaLrkLve 202
                 c+   D ++++++l + L + L +++++ ++ c aL +L e
  CCE30847.1 443 CAESIDPAQHLPALIESLFKGLLSNVKMAPSCCWALMNLAE 483
                 999**********************************9976 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.031
      NUC173   5 aleslLslkyqaawkevlevlsalfeklgkrsspl..lkkilktlgelreseefelkkeadevigaairamG 74 
                 a  ++L++  q+a+ + l+++++l +++ kr +++  l++ + ++ +  + ee  +++ + +v++a+i+ + 
  CCE30847.1 523 AAYEVLNVFVQNAATDSLQTIASLSDVILKRLEETigLQSQVVSVEDKITLEE--MQNSLCTVLQAIITRLD 592
                 555799999*******************9999655457777777777766664..68888888888887665 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.11
      NUC173  21 vlevlsalfeklgkrsspllkkilktl.gelrese.efelkkeadevigaairamGp..evvLevlPLnle 87 
                  + ++s + + +g+rs+p+ ++ ++ l ++lr+   ++++k ++ +++g    a+G   e+ L+v+   le
  CCE30847.1 665 AIGLVSDITRSMGERSQPFCDNFMNYLlNNLRSPTlSNQFKPAILQCFGDVAGAIGGhfETYLSVVATVLE 735
                 56788999999*****99999988865267888887779***********999999533667777766666 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.29   4.3e+02      14      40 ..     135     161 ..     130     162 .. 0.89
   2 ?   -1.1   0.0       1.5   2.2e+03      21      36 ..     232     247 ..     224     252 .. 0.77
   3 ?    3.7   0.0     0.044        66      10      27 ..     323     340 ..     317     342 .. 0.84
   4 !    6.2   0.0    0.0073        11       8      31 ..     409     431 ..     402     441 .. 0.79
   5 ?   -0.8   0.7       1.2   1.8e+03      32      40 ..     474     482 ..     473     483 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.29
                 HHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  14 vppLvrLLssedeevqeeAawALsNLa 40 
                 +p Lv+  +++ ++ ++++++++++++
  CCE30847.1 135 MPYLVKNVTDGADNQKQASLTTIGYIC 161
                 678999999999999***********9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.5
                 TTTSSHHHHHHHHHHH CS
         Arm  21 LssedeevqeeAawAL 36 
                  + ed ++q+ A ++L
  CCE30847.1 232 TQAEDSRIQQGAFGCL 247
                 567999******9999 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.044
                 HTTHHHHHHHHTTTSSHH CS
         Arm  10 eaGavppLvrLLssedee 27 
                  + +vp+L+ LL+ +de+
  CCE30847.1 323 ASEVVPVLLVLLTKQDED 340
                 5779*********99886 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0073
                 HHHTTHHHHHHHHTTTSSHHHHHH CS
         Arm   8 vieaGavppLvrLLssedeevqee 31 
                 ++++ a+p+L+++++++d +v+  
  CCE30847.1 409 IVKQ-ALPVLINMMDDPDLQVRDS 431
                 6766.9*************99865 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1.2
                 HHHHHHHHT CS
         Arm  32 AawALsNLa 40 
                 ++wAL NLa
  CCE30847.1 474 CCWALMNLA 482
                 8****9998 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.61   9.2e+02     218     274 ..     203     258 ..     168     259 .. 0.74
   2 ?    4.1   0.0     0.019        29     124     156 ..     413     445 ..     376     465 .. 0.85
   3 ?    6.3   0.0     0.004         6     118     173 ..     497     554 ..     465     702 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.61
        Tti2 218 lldkilregilsglshasesprlvellleqlsevveelgistvkhLkrlipllseil 274
                  l + l e + s+++h+ e   ++++++e ++   ++++  +  +L r++ l++e +
  CCE30847.1 203 ALGDSL-EFVSSNFKHEGERNYIMQVVCEATQAEDSRIQQGAFGCLNRIMALYYENM 258
                 444444.66888999999999999999999999999999999999999999988755 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.019
        Tti2 124 ivPpiLnllDdtdtsvKlrGlklLqtllekles 156
                   P+++n++Dd+d +v+ +    L +l  ++ +
  CCE30847.1 413 ALPVLINMMDDPDLQVRDSTAFTLGRLTYSCAE 445
                 57***************9998888888777766 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.004
        Tti2 118 eanwplivPpiLnllDdtd..tsvKlrGlklLqtlleklesskllkr.tGLdsvfedal 173
                   ++   v+ +Ln+   td  tsv++ + ++L+ ++++  ++ +l++   L +v+ + l
  CCE30847.1 497 TIHFTQAVSTLLNVTSRTDadTSVRTAAYEVLNVFVQNAATD-SLQTiASLSDVILKRL 554
                 5689999999****9988777*****************9999.6655145666666555 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.068     1e+02      22      38 ..     416     432 ..     402     432 .. 0.82
   2 ?    5.2   0.1     0.018        27      28      41 ..     514     527 ..     513     528 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.068
                   HHHHHHHSS-HHHHHHH CS
  Cohesin_HEAT  22 tiarrltDsspsVRdAa 38 
                   ++++ + D++ +VRd++
    CCE30847.1 416 VLINMMDDPDLQVRDST 432
                   5677889********85 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.018
                   HSS-HHHHHHHHHH CS
  Cohesin_HEAT  28 tDsspsVRdAaLel 41 
                   tD ++sVR Aa e 
    CCE30847.1 514 TDADTSVRTAAYEV 527
                   79*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (875 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.43
# Mc/sec: 6172.83
//
Query:       CCE30848.1  [L=780]
Description: related to general repressor of transcription [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-11   44.4   0.1    1.8e-11   43.6   0.1    1.3  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.1   9.8e-16   1.8e-11       4     198 ..     139     322 ..     138     356 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 9.8e-16
  Fungal_trans   4 ffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLlll 100
                    f+  + q++++ k+++++      +++ +++s +ll +il++ a++s+  + +  s  +      + f++  +++i ++ +++ + l+ +q+++ll
    CCE30848.1 139 LFTQQYFQLGFIPKEQYTERL----RKDMRSTSLFLLMSILSVSARLSPALKLRYGSGVKA-----AEFFIDRASYIANEEVYQEPTLERCQAFFLL 226
                   567777888999999999999....899999********************9997665555.....468889999999999999999********** PP

  Fungal_trans 101 elyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwesdd 197
                   ++  ++s++r + +  +g+a+r+a  + Lh ++ y  +  +++l+   aes rR+ w+  + D +++  l   + l +s+i+++LP d+dd+ +  +
    CCE30848.1 227 SIAQQNSGERHKSYINMGIAMRMAILMQLHCEETYHISNPTPELTMR-AESARRTMWMLHSQDNLHSGPLSPVS-LAASDITTLLPSDEDDFVNGRE 321
                   *********************************9999777*******.*******************9998655.6**************9766655 PP

  Fungal_trans 198 a 198
                    
    CCE30848.1 322 P 322
                   5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5379.34
//
Query:       CCE30849.1  [L=307]
Description: probable phosphoribosylaminoimidazole-succinocarboxamide synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-97  324.4   0.0    5.9e-97  324.2   0.0    1.0  1  SAICAR_synt  SAICAR synthetase


Domain annotation for each model (and alignments):
>> SAICAR_synt  SAICAR synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.2   0.0  3.3e-101   5.9e-97       2     249 ..      15     274 ..      14     277 .. 0.94

  Alignments for each domain:
  == domain 1  score: 324.2 bits;  conditional E-value: 3.3e-101
                  EEE-SSEEEEE-SSTTEEEEEEESEEEECCCTEEEEETTHHHHHHHHHHHHHHHHHH....--BSEEEE...............-SSSEEEEE-EEEE CS
  SAICAR_synt   2 lyeGKvrdvYeledddklllvakDrisAfdvvlkeeipgKGkvltqlsafwfeklek....ipnhliksld.pe.........qlegrsmlvkklkml 85 
                  + +GKvrd++ l d+ +ll+va+Dr+sAfdvv+ ++ip+KG++lt +sa+wf++l++    +++h++ sl+ p+          +++rsm v+kl+++
   CCE30849.1  15 ISSGKVRDLFGLPDPGSLLFVASDRLSAFDVVMTNGIPNKGAILTLMSAYWFRLLSEripdLRSHFL-SLEiPAgvltaseasLIKNRSMQVRKLEVV 111
                  789*****************************************************55344666**9.66664466667788899************* PP

                  SEEEEEEEE--HHH.......HH....HH..T--TT-EEEEEEEEEEE--CCCT.S-EE-HHHHH.HTT-HHHHHHHHHHHHHHHHHHHHHHHHTTEE CS
  SAICAR_synt  86 pvEvvvRgyltGslwkeykksgkvcgirlpeglkegeklpepiftpstKaeegehDeniseeevvealgteeeaeeieelalavyekaaelaaergii 183
                  +vE++vRgyltGs+wkey+++g+v+g+++p+g++ ++k+p++i+tpstKae+gehD+ni+ +++ +++g++++a+++eel+l +ye+aa++a+ergii
   CCE30849.1 112 KVEAIVRGYLTGSAWKEYQAKGTVHGLAMPAGMQLSQKFPRAIYTPSTKAEAGEHDQNIHPDDAWKEIGDKDTAKKVEELSLMIYETAAAYAEERGII 209
                  ************************************************************************************************** PP

                  EEEEEEEEEEETTTTEEEEES--.STTTEEEEETTT.....GGGB-STHHHHTT-STHHHHHHHHH CS
  SAICAR_synt 184 lvDtKlEFGldeedgelvLaDevltpDssRfwdaetyeegkeqeslDKqfvRdwleeveekwkekl 249
                  ++DtK+EF +d+ dg+++L+DevltpDssRfw+++ ye gkeq+s+DKq++R+wl ++  k +e +
   CCE30849.1 210 IADTKFEFARDQ-DGNIYLVDEVLTPDSSRFWPKDGYELGKEQDSFDKQYIRNWLIKEGLKAQEGV 274
                  ***********5.9*******************************************988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2404.82
//
Query:       CCE30850.1  [L=680]
Description: related to meiotic cohesin rec8 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-24   86.4   0.0    2.4e-24   85.6   0.0    1.3  1  Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
    0.00013   21.1   0.0    0.00028   20.1   0.0    1.5  1  Rad21_Rec8    Conserved region of Rad21 / Rec8 like protein


Domain annotation for each model (and alignments):
>> Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   2.6e-28   2.4e-24      25     107 ..      12      96 ..       5      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 2.6e-28
  Rad21_Rec8_N  25 k...klskkeilevniekaveeIlnpeaplaLrlsgqLllGvvriyskkvkyllsDceealekikkafksikeakidlpeekkaea 107
                   +   kl++k+i+ vn++ka+++I++p aplaLrl+g+Ll+Gv+r++s++++y+lsD+e++++++ + f+s+++++id ++ k a++
    CCE30850.1  12 SnqpKLNRKAIQGVNVPKACQKIIDPGAPLALRLQGNLLYGVSRVFSHQCNYVLSDAEKTQSDMMTFFRSMNTSEIDPKAGK-AKR 96 
                   2445*****************************************************************99888***99965.443 PP

>> Rad21_Rec8  Conserved region of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.1e-08   0.00028      16      41 ..     633     658 ..     617     660 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.1e-08
                 --HHHHHHHHHHHHHHHHTSEEEEES CS
  Rad21_Rec8  16 tRkeAArlFyelLvLatkgvIkvkQe 41 
                 ++ +AA++F ++L+Latk v++v Qe
  CCE30850.1 633 SKMVAAQAFMHILSLATKNVVSVRQE 658
                 6778*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4960.05
//
Query:       CCE30851.1  [L=496]
Description: related to rab geranylgeranyl transferase component A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-26   91.2   0.0    7.4e-26   90.6   0.0    1.1  1  GDI       GDP dissociation inhibitor
  ------ inclusion threshold ------
      0.045   13.9   1.2      0.086   13.0   1.2    1.4  1  DUF5518   Family of unknown function (DUF5518)


Domain annotation for each model (and alignments):
>> GDI  GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   8.3e-30   7.4e-26       3     284 ..       7     309 ..       5     335 .. 0.78

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 8.3e-30
                 XEECEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHH...HHHH-TT...........HHHHHHH--GGG--EESS--BEETTSHHH CS
         GDI   3 eeydvivlGtGlkecilsGllsvdgkkvlhldrndyyGgesasltleql...yerfkle...........ekpeeklGkdrdwnvdlipkfllanGelv 87 
                  ++dv++ GtGl++ +l+  ls +gk vlh+d n+yyG+  a+l+l++     e++ +             k  + l ++r +++ l p+ + a  el 
  CCE30851.1   7 TKWDVVISGTGLQQSLLALALSRSGKNVLHVDSNEYYGAAEAALSLQEAdewTEKYASVegnepfaaaqvFKDGDGLAASRSYSIALAPQPVHARSELL 105
                 579****************************************9997532223444433332333322222345678899******************* PP

                 HHHHHTTGGGCS-EEE-SEEEEEE......TCEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHH-BTT.BGGGSTT--TTTSBHHHHHHHCT--HH CS
         GDI  88 kiliktdvtrylefkaveGsyvyk......egkiakvpanelealaspllglfekrrakkfleyvseyeed.dpktyedldlkkatmkevykkfdlsed 179
                 + l+ ++  r +ef av   ++++      +  ++++p++  + ++ + +    kr + kfl++v ey+ + +++ ++  + +    + + ++f+l+++
  CCE30851.1 106 NQLVASKAFRQIEFLAVGSFFIFQpgsessGPSLTRIPSTREDVFSNKDIPTRAKRSLMKFLKFVLEYDVEpQTELWKSQESE-PLAEFLEREFKLDSQ 203
                 *****************999****8887766689**********************************966155667765544.445667789****** PP

                 HHHHHHHHTS--SSSGGGGSBCHHHHHHHHHHHHHHCCCSS.-SEEEETT.-TTHHHHHHHHHHHHTT-EEETS--ECEE..EE-TTS-EEEEEETTEE CS
         GDI 180 tkdfiGhalalyrdddylkqpaletleriklyaeslarygk.spylyply.GlGelpqgfarlsaiyGGtymlnkpvdev..vldedgkvvGvkseeev 274
                 t+ ++      +++d  + +     l  i+ + +s+  +g     +yp + Gl e+ q  +r  a+ G  yml   v +   + ++ + +v +   ++v
  CCE30851.1 204 TQSYVATLTLSFQKDTSVGD----GLASIHRHLKSMGVFGAgFAAVYPKWgGLSEVAQVGCRAGAVGGTIYMLGVGVSDTkhISKDGQDLVAISLTNDV 298
                 *****977667788776654....455566678999999963789***9945*********************99988762144555667777765554 PP

                 .EEECEEEE-G CS
         GDI 275 .akakkvicdp 284
                  +++k  i d 
  CCE30851.1 299 tVETKTFIRDD 309
                 15666666665 PP

>> DUF5518  Family of unknown function (DUF5518)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.2   9.6e-06     0.086      21      68 ..     227     274 ..     208     293 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.6e-06
     DUF5518  21 llpsvgsllgllvgGlvaGylaggdskdgavaGalaGligaipvlvll 68 
                  +  +++ +g++ +G+ a y   g+ ++ a +G +aG++g+ ++++ +
  CCE30851.1 227 SIHRHLKSMGVFGAGFAAVYPKWGGLSEVAQVGCRAGAVGGTIYMLGV 274
                 566788899********************************9996544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3661.25
//
Query:       CCE30852.1  [L=340]
Description: related to exosome complex exonuclease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-19   69.7   0.0    7.5e-19   68.5   0.0    1.6  1  RNase_PH    3' exoribonuclease family, domain 1
     0.0019   18.2   0.0     0.0034   17.4   0.0    1.4  1  RNase_PH_C  3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   8.3e-23   7.5e-19       1     132 []      44     220 ..      44     220 .. 0.85

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 8.3e-23
                 EEEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEE.......E-TCCG--CC.........EEEECCCCECCCCEC-C...S...HHHHHHHHHHH CS
    RNase_PH   1 elRslsietgvlsqanGSaylelGdtkvlasvtgpiee.......rpseerddae.........galdveveyapfasgerrregrpsdeeielsrlle 83 
                 e R+++++   ls+ +GS+++++Gdt+v+++++g++         r        +         + l+ ++e+a  +++++  +g p+  +++ls +++
  CCE30852.1  44 EARPITVNLSSLSHPHGSSLVRMGDTTVICGIRGETLLtrdianyR---A----SnskselwdyDLLVPNIEMATGCAPQFLPGGPPTTLAQTLSTRIY 135
                 67**********************************6644443331...2....122244677667999999999999999999*************** PP

                 HHHCCTC-C.......................................CGCCTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  84 ralrpsill.......................................ekkpkstididitvlssdggslldalinaaslALadagip 132
                 + l  s l+                                         +  + ++idi  +s dg +++da+++a+ +AL d++ip
  CCE30852.1 136 SLLHGSNLVqpddlriwqtrpsehlvaeddamdeddenpssqraeayvVAY--WVLYIDIFFISFDG-NPFDAAWAATLAALRDTKIP 220
                 ********7777777788888888888888889999999999996655555..**************.*******************9 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.8e-07    0.0034       2      49 ..     247     307 ..     245     316 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.8e-07
                 --EEEEEEEETTE...........EEES--HHHHHHSSEEEEEEE...ETTSEEEEEEEECS CS
  RNase_PH_C   2 pviavtvgkvddq...........fvlDptkeEedlsegdltlav...agtkevvtlmkegg 49 
                 pv++ +v + + +           +++Dp++ Ee+l++  +t++v    g+ ++  ++k gg
  CCE30852.1 247 PVACTAVVFTG-KetdrpsdgkfwLLVDPDNLEESLCDETVTIVVdcqEGNTRILSVSKHGG 307
                 44555555555.336666666799*********************44444445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2610.49
//
Query:       CCE30853.1  [L=844]
Description: related to Fre1p and Fre2p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-19   69.6   5.6    2.5e-19   69.6   5.6    2.2  2  Ferric_reduct  Ferric reductase like transmembrane component
    2.3e-13   50.6   0.0    2.6e-12   47.2   0.0    2.1  1  NAD_binding_6  Ferric reductase NAD binding domain
    4.1e-12   46.1   0.0    9.7e-12   44.9   0.0    1.6  1  FAD_binding_8  FAD-binding domain
  ------ inclusion threshold ------
      0.013   16.1   0.0       0.48   11.1   0.0    2.4  2  NAD_binding_1  Oxidoreductase NAD-binding domain
        3.8    8.1  10.9       0.18   12.4   0.8    3.3  3  DUF4405        Domain of unknown function (DUF4405)


Domain annotation for each model (and alignments):
>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.78   2.8e+03      41      55 ..     162     177 ..     133     191 .. 0.54
   2 !   69.6   5.6     7e-23   2.5e-19       2     124 ..     201     323 ..     200     324 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.78
  Ferric_reduct  41 gvlafl.lallHvily 55 
                    +vla++ +al+ vily
     CCE30853.1 162 AVLACVlVALVYVILY 177
                    2222221334444444 PP

  == domain 2  score: 69.6 bits;  conditional E-value: 7e-23
  Ferric_reduct   2 GiaalillplalllalRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsal..deerlldsllkkpynl....lGvlalllli 91 
                    G++a+++ p +++ +++ n+l+ l g++ ++l+ fH+wlg+++++l+l+H+i ++++++ ++    ++++++ +            +Gv  ++ li
     CCE30853.1 201 GMLAVAMTPWIVVTSMKANILTTLIGIGPERLNVFHRWLGYICLFLSLVHMIPFYVQPVWKDGGmtVFNQIFPDGS-----GiiygTGVACIVPLI 291
                    99********************************************************997753322222222222.....14566********** PP

  Ferric_reduct  92 ilaitSlkfirrrlsyelFyylHhllyvaylll 124
                    +l++ Sl++ir r+ ye+F +lH+   +ay+ l
     CCE30853.1 292 WLCVASLPWIR-RFAYETFVILHIPAGIAYVGL 323
                    ***********.*****************9976 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   7.2e-16   2.6e-12       1     154 [.     479     818 ..     479     820 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 7.2e-16
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyeaedasdqlissiegens 96 
                    +++ +lvagG+Git ++s l  l+k++++ +  t+k+  +w+++  + ++wf++ L    e  + g++  + ++T+        ++++  i g ns
     CCE30853.1 479 FDTCILVAGGSGITSLMSQLLSLVKRMREGKAITQKVVVVWAFKRFEAMDWFREELRICRESAPPGSVTCKFFITGAVRRRLG-SEMTPPISGRNS 573
                    67789************************************************888866666666***********9988433.335555566666 PP

                    xxxx............................................................................................ RF
  NAD_binding_6  97 eslk............................................................................................ 100
                    + ++                                                                                            
     CCE30853.1 574 RTINhinhmlhdrldgfvagiaskrnsalihivphgdlgrqhelredeqdcitalpqqkglqahqhpapsdiqvgpngfpedkkvvqedvppqsde 669
                    66556667777788888888888888888888888888888899999999999999999999999******************************* PP

                    ...............................................................................xxxxxxxxxx....... RF
  NAD_binding_6 101 ...............................................................................qgvdavsgtr....... 110
                                                                                                   +        +       
     CCE30853.1 670 fqipplrkekapssncappnptkhfsdakfdgeidvhsirapepahlhdrslpptaakqrptstigppagfdfgfastpT--------Emqknlmr 757
                    *******************************9999999999999998888888888887777777777777766654330........25577778 PP

                    ...........xxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 111 ...........nvkihfgRPnlkevlkdi......askhknssvgvfvCGppklvkevkkl 154
                                 ++ +gRP+l  +lk+        +   + +++vfvCGp++++  v+ +
     CCE30853.1 758 safpiphefdcGWSVEYGRPDLGYMLKEWatggsdGRGILGRRTAVFVCGPASMRVGVADT 818
                    889999999999999**************88876666677899***********9888766 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   2.7e-15   9.7e-12       7     106 ..     372     470 ..     366     473 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 2.7e-15
  FAD_binding_8   7 akvalleedliklkvskpkkslkykaGqyvyinipslsklfwqsHPFtiasape..........ddklslvikvksgltkklakkllssskkelen 92 
                    a + l+ ed ik++++ + +   +k+Gqyvy+ ip +s  + + HPFti+s ++             ++lv k  +g+t+k+      +       
     CCE30853.1 372 AAITLMSEDAIKVTIPTQMR---WKPGQYVYLRIPGIS--LHDNHPFTITSLCSedfpseygenYRDCVLVFKPFKGFTRKVLDTAIAK------G 456
                    7789999*******987776...***************..79**********9977777776544569**************9999998......6 PP

  FAD_binding_8  93 kkaklkvlidGPYG 106
                      ++ + ++dGPYG
     CCE30853.1 457 PFHTYRAFLDGPYG 470
                    67889********9 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00013      0.48       1      55 [.     484     543 ..     484     565 .. 0.78
   2 ?    2.3   0.0      0.07   2.5e+02      89     107 ..     797     815 ..     767     817 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                    EEEEGGGGHHHHHHHHHHHHH.CT...TCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTT CS
  NAD_binding_1   1 miagGtGiaPvrsvlrailee.ak...dktkvvlvyGnrtee.dllyreeleelakklpg 55 
                    ++agG+Gi+ ++s l  ++++  +    ++kvv+v++ ++ e    +reel+  ++++p 
     CCE30853.1 484 LVAGGSGITSLMSQLLSLVKRmREgkaITQKVVVVWAFKRFEaMDWFREELRICRESAPP 543
                    79********99998888887433777899*******99988444689999888887776 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.07
                    SSTTEEEEEECSHHHHHHH CS
  NAD_binding_1  89 kkeethvyvCGppgMikav 107
                        t v+vCGp  M  +v
     CCE30853.1 797 LGRRTAVFVCGPASMRVGV 815
                    567899********97655 PP

>> DUF4405  Domain of unknown function (DUF4405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.93   3.3e+03      39      60 ..     147     168 ..     125     168 .. 0.75
   2 ?   12.4   0.8   5.1e-05      0.18      28      62 ..     216     251 ..     196     253 .. 0.76
   3 ?    0.7   0.5      0.22   7.8e+02      39      61 ..     305     327 ..     264     329 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.93
     DUF4405  39 skhqwrdiHeilgllflilvvl 60 
                     w+++  +++ l ++++vl
  CCE30853.1 147 PDLAWKEWRVTFSSLAVLACVL 168
                 44569******99999999875 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.1e-05
     DUF4405  28 grgaywa......flglskhqwrdiHeilgllflilvvlHl 62 
                 +            ++g++ + +  +H++lg+++l+l ++H+
  CCE30853.1 216 M-----KanilttLIGIGPERLNVFHRWLGYICLFLSLVHM 251
                 3.....13444589999***********************7 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.22
     DUF4405  39 skhqwrdiHeilgllflilvvlH 61 
                  +++   +H+ +g++ ++l+ +H
  CCE30853.1 305 AYETFVILHIPAGIAYVGLLFWH 327
                 66778889**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5655.83
//
Query:       CCE30854.1  [L=128]
Description: uncharacterized protein CPUR_04704 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.28   11.1   0.0    1.5  1  DUF3248   Protein of unknown function (DUF3248)
       0.21   10.7   0.0       0.27   10.4   0.0    1.1  1  TMEM173   Transmembrane protein 173


Domain annotation for each model (and alignments):
>> DUF3248  Protein of unknown function (DUF3248)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.2e-05      0.28      36      62 ..      15      41 ..       8      42 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.2e-05
                HS---B---HHHHHHHHHCT-EEEEES CS
     DUF3248 36 eLprLrnvsdaeveelvkeGrvrvEWV 62
                +L +L + +d e+ee+v+ G+v++E V
  CCE30854.1 15 RLKKLNAWEDYELEEAVRGGKVVLETV 41
                6889999*****************976 PP

>> TMEM173  Transmembrane protein 173
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0     3e-05      0.27      15      47 ..      36      68 ..      30      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3e-05
                XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX CS
     TMEM173 15 dLlkrlcllveellshvnsryrgslwkalracf 47
                 +l+ +cl+v  +++h +++ + ++w++l+a +
  CCE30854.1 36 VVLETVCLFVHACVKHGQYQVPYEFWRVLHAEY 68
                6899*************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1010.46
//
Query:       CCE30855.1  [L=160]
Description: related to molybdopterin synthase large subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-37  128.9   0.0    1.2e-37  128.6   0.0    1.1  1  MoaE             MoaE protein
  ------ inclusion threshold ------
       0.17   11.2   0.0        0.2   10.9   0.0    1.1  1  Lipase_GDSL_lke  GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> MoaE  MoaE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.0   1.4e-41   1.2e-37       2     113 .]      20     131 ..      19     131 .. 0.97

  Alignments for each domain:
  == domain 1  score: 128.6 bits;  conditional E-value: 1.4e-41
                 ESS---HHHHHHHH--TT--EEEEEEEE------TS-EEEEEECC-HHHHHHHHHHHHHHHHCCCTTSEEEEEEE-EEEETTSEEEEEEEEESSHHHHH CS
        MoaE   2 teepldvaeiealvaspkaGAvvlFvGtvRdsfdgkkvteLeyeayepmaektleeiaeearerwelervavvHrlGelevgeasvvvavssahRkeaf 100
                 t++ l+++++++ v+sp+aGA+vlF+Gt+Rd+f gk v+ L+y+ay+++a++t+ +ia+++ ++++l+++a++HrlG++++ge+s+++avss+hR++a+
  CCE30855.1  20 TTDLLNPQATMDKVRSPAAGAIVLFAGTTRDNFAGKPVKDLQYTAYNQLALRTMLAIAKDMLSKHGLKGIAMIHRLGTVPIGEESILIAVSSPHRQAAW 118
                 6778999999***************************************************************************************** PP

                 HHHHHHHHHHHHH CS
        MoaE 101 eaceylidelKkr 113
                 +a e++++e+K+r
  CCE30855.1 119 RAGEEALEECKAR 131
                 ***********86 PP

>> Lipase_GDSL_lke  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.3e-05       0.2      85     124 ..      32      71 ..      13      93 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.3e-05
  Lipase_GDSL_lke  85 rlkalgtpdiilvfgatndswagsplgeykyagwakkdly 124
                      ++++  +  i+l  g+t d +ag p+ + +y+ + +  l 
       CCE30855.1  32 KVRSPAAGAIVLFAGTTRDNFAGKPVKDLQYTAYNQLALR 71 
                      45555566789999******************99876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1180.97
//
Query:       CCE30856.1  [L=801]
Description: related to RNA binding motif protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-10   39.8   3.4    6.2e-10   38.8   3.4    1.4  1  G-patch         G-patch domain
    3.2e-07   30.1   0.1      0.055   13.3   0.0    3.7  3  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R
    4.3e-05   23.5   2.6    4.3e-05   23.5   2.6    2.3  2  G-patch_2       G-patch domain
    0.00012   21.3   3.2    0.00012   21.3   3.2    2.1  2  zf-RanBP        Zn-finger in Ran binding protein and others
     0.0012   18.5   1.2     0.0012   18.5   1.2    2.0  2  RED_N           RED-like protein N-terminal region
  ------ inclusion threshold ------
      0.015   15.6   0.1      0.041   14.2   0.1    1.8  1  MT0933_antitox  MT0933-like antitoxin protein
      0.062   13.6   0.3      0.062   13.6   0.3    2.1  2  zf-C2H2_2       C2H2 type zinc-finger (2 copies)
       0.39   11.1   6.1      0.068   13.5   1.5    2.0  2  zf-C2H2_jaz     Zinc-finger double-stranded RNA-binding
        1.5    9.0   4.1       0.54   10.3   0.1    2.3  2  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
        3.6    8.0   8.6         19    5.6   0.5    3.7  4  ROKNT           ROKNT (NUC014) domain
        9.3    6.1   5.4        6.4    6.7   0.0    2.7  3  EOS1            N-glycosylation protein


Domain annotation for each model (and alignments):
>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   3.4   3.8e-13   6.2e-10       4      45 .]     722     763 ..     721     763 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 3.8e-13
     G-patch   4 iGvkmLqkmGWkpGqGLGkkeqGiaePieakikkdraGlGak 45 
                  G+ mL+kmGW  G GLG +++G++e+i +   + + GlGa+
  CCE30856.1 722 RGAGMLAKMGWTAGGGLGANGDGRTEAIATNAYQAGVGLGAE 763
                 6889************************************97 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.4e-05     0.055       2      57 ..     148     205 ..     147     207 .. 0.77
   2 ?    2.3   0.0     0.089   1.5e+02       1      33 [.     297     329 ..     297     337 .. 0.83
   3 !    9.8   0.0   0.00042      0.68      29      58 ..     357     387 ..     351     392 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.4e-05
                 EEESETTTSSHHHHHHHHHTTS.....CEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHH CS
       RRM_1   2 fVgnLppdvteeeLkelFskfG.....piksiklvrdetgkskgfafVeFeskedAekAle 57 
                 ++++L++++t  eL+e++  +      p +++++++    + k  afV+Fe+ ++A++ ++
  CCE30856.1 148 ILEGLSHSITTAELREWLVTYSiaaehPPVDVRIPS---SRGKLRAFVQFEDVSQATAFVK 205
                 568999999999999999887522222233777777...59999*************9887 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.089
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd 33 
                 l+V  Lp+ vte++L + ++  ++ +++k + +
  CCE30856.1 297 LVVHPLPSFVTEDMLAKNLKLLEKTEEVKSSAN 329
                 68999**********999998888888887765 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00042
                 EEEEE.TTTSEEEEEEEEESSHHHHHHHHHH CS
       RRM_1  29 klvrd.etgkskgfafVeFeskedAekAlea 58 
                  l r+ + g s +++f eF + edA++A+++
  CCE30856.1 357 FLTREvRSGESFKYGFAEFWTLEDAAAAVAK 387
                 5666678899******************986 PP

>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.3       9.9   1.6e+04      27      45 ..      75      90 ..      74      97 .. 0.62
   2 !   23.5   2.6   2.6e-08   4.3e-05      18      58 ..     723     763 ..     709     766 .. 0.93

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 9.9
   G-patch_2 27 Wkegqgigknkkgrvkpee 45
                W+e+q+  +n ++   +e+
  CCE30856.1 75 WNEEQPSYENMYD---EEH 90
                8888888777544...343 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 2.6e-08
   G-patch_2  18 GaAlLrGMGWkegqgigknkkgrvkpeepkrRpgrlGLGak 58 
                 Ga +L  MGW++g g g n+ gr++++  +   ++ GLGa+
  CCE30856.1 723 GAGMLAKMGWTAGGGLGANGDGRTEAIATNAYQAGVGLGAE 763
                 9**************************************97 PP

>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   3.2   7.5e-08   0.00012       1      28 [.     243     270 ..     243     271 .. 0.93
   2 ?   -0.4   0.1      0.44   7.2e+02      17      25 ..     607     615 ..     606     615 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 7.5e-08
                 GSSSEE-SSS--EEESSSSB-TTT--BT CS
    zf-RanBP   1 regdWdCskClvqNfawstkCvaCqapk 28 
                 r +dW+C+ C + N+ ++t C +C++++
  CCE30856.1 243 RRKDWTCPLCDFFNYHSRTQCKSCGTSR 270
                 568**********************987 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.44
                 SSSB-TTT- CS
    zf-RanBP  17 wstkCvaCq 25 
                 ++++C++C+
  CCE30856.1 607 ERLVCLICM 615
                 789*****5 PP

>> RED_N  RED-like protein N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   1.2   7.3e-07    0.0012       9      57 ..     655     702 ..     647     725 .. 0.63
   2 ?   -4.2   0.5       6.3     1e+04      11      32 ..     776     797 ..     772     800 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7.3e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX CS
       RED_N   9 lkkqeeekeeelaekYrDRAkERRegknadyekedalsetaayravapd 57 
                 ++ q++++ee++ ++YrDRAkERR   n+  +  +    ++a  +  p+
  CCE30856.1 655 KRLQKQAEEESQMPQYRDRAKERRVIYNQPEKP-SVPPPSSASSTTKPK 702
                 4456677778889***********999955422.222233333333333 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 6.3
                 XXXXXXXXXXXXXXXXXXXXXX CS
       RED_N  11 kqeeekeeelaekYrDRAkERR 32 
                 k+  +k ++     +D+A+ER 
  CCE30856.1 776 KKTTNKYSDYLATAQDKARERY 797
                 4444555555566678888875 PP

>> MT0933_antitox  MT0933-like antitoxin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.5e-05     0.041      22      48 ..     770     796 ..     767     797 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.5e-05
  MT0933_antitox  22 AgdavddktGgKysdkIdkgqdaakda 48 
                     A + +++kt  Kysd+  ++qd+a+++
      CCE30856.1 770 AVELAEKKTTNKYSDYLATAQDKARER 796
                     668899******************997 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.5       4.8   7.8e+03      49      61 ..     259     271 ..     247     279 .. 0.72
   2 ?   13.6   0.3   3.8e-05     0.062      50      85 ..     608     643 ..     599     652 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.8
   zf-C2H2_2  49 ekleClyCekefk 61 
                 ++ +C  C+++++
  CCE30856.1 259 SRTQCKSCGTSRT 271
                 4578999987754 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.8e-05
   zf-C2H2_2  50 kleClyCekefkslealreHmkkkgHckineeeeee 85 
                 +l Cl+C ++ ks ++++ H k+++H+  +e+ ++ 
  CCE30856.1 608 RLVCLICMRKYKSSDEVKIHEKSRNHKSAMEDADKV 643
                 689*************************98755444 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       2.2   3.6e+03       3       8 ..     248     253 ..     247     254 .. 0.87
   2 ?   13.5   1.5   4.2e-05     0.068       4      27 .]     611     634 ..     608     634 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.2
                  BBTTTT CS
  zf-C2H2_jaz   3 YCvlCd 8  
                   C+lCd
   CCE30856.1 248 TCPLCD 253
                  6****8 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4.2e-05
                  BTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHlkSKkHK 27 
                  C +C + +ks+   + H+kS++HK
   CCE30856.1 611 CLICMRKYKSSDEVKIHEKSRNHK 634
                  ***********************9 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00033      0.54      18      34 ..     241     257 ..     226     261 .. 0.75
   2 ?   -1.8   0.0         2   3.3e+03      20      32 ..     606     617 ..     602     620 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00033
  zf-Sec23_Sec24  18 dfggkrwiCnfCnhkne 34 
                     d + k w+C++C + n+
      CCE30856.1 241 DPRRKDWTCPLCDFFNY 257
                     677889*******9997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2
  zf-Sec23_Sec24  20 ggkrwiCnfCnhk 32 
                     +  r +C +C  k
      CCE30856.1 606 R-ERLVCLICMRK 617
                     4.6889****875 PP

>> ROKNT  ROKNT (NUC014) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.6   2.6e+03      25      39 ..      29      41 ..      23      42 .. 0.70
   2 ?   -2.9   0.0       5.4   8.8e+03      23      33 ..      70      80 ..      69      82 .. 0.82
   3 ?    5.6   0.5     0.012        19      13      32 ..     459     476 ..     453     484 .. 0.66
   4 ?    5.3   0.0     0.015        24       3      39 ..     596     632 ..     594     634 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.6
       ROKNT 25 aeDmeeeqafkRsRn 39
                a   +   a+ RsR 
  CCE30856.1 29 A--QDQHDAYSRSRH 41
                3..455679****95 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.4
       ROKNT 23 RpaeDmeeeqa 33
                R+  D +eeq+
  CCE30856.1 70 RSNHDWNEEQP 80
                89999999984 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.012
       ROKNT  13 NtEtnGefGkRpaeDmeeeq 32 
                 N+ +    G RpaeD + e 
  CCE30856.1 459 NKDS--GKGSRPAEDQDAEG 476
                 3333..3699****988663 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.015
       ROKNT   3 teqqEEetFsNtEtnGef.GkRpaeDmeeeqafkRsRn 39 
                  + qEE tF   E    + + R    ++e +++ +sRn
  CCE30856.1 596 QDDQEE-TFVDRERLVCLiCMRKYKSSDEVKIHEKSRN 632
                 589999.******8755569999999999999999999 PP

>> EOS1  N-glycosylation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0039       6.4      17      37 ..     152     172 ..     147     173 .. 0.92
   2 ?   -2.5   0.0       2.5   4.1e+03      88      88 ..     451     451 ..     302     512 .. 0.53
   3 ?   -0.6   1.9      0.68   1.1e+03      87     147 ..     618     679 ..     587     684 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0039
        EOS1  17 layslldsLlvrWlvyYsila 37 
                 l++s+++  l+ Wlv+Ysi+a
  CCE30856.1 152 LSHSITTAELREWLVTYSIAA 172
                 689***************986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.5
        EOS1  88 v 88 
                 v
  CCE30856.1 451 V 451
                 1 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.68
        EOS1  87 wvtSnladaeldsrevksrssaaerleskasslrqgksrhkrsvsksea.kkkrertsskrt 147
                 + +S+  +++++sr++ks   +a+++++ + +l  +++r +++++++++  + r r +++r+
  CCE30856.1 618 YKSSDEVKIHEKSRNHKSAMEDADKVKAAQPRLAARDKRLQKQAEEESQmPQYRDRAKERRV 679
                 44555555556677777766666665555544444444444433333332556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1193  (0.0665402); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5292.37
//
Query:       CCE30857.1  [L=376]
Description: related to acyl-CoA thiolesterase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-76  255.7   0.6    8.7e-76  255.4   0.6    1.1  1  4HBT_3         Thioesterase-like superfamily
    1.9e-22   79.5   0.0    1.2e-12   47.9   0.0    4.0  3  Acyl_CoA_thio  Acyl-CoA thioesterase


Domain annotation for each model (and alignments):
>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4   0.6   9.8e-80   8.7e-76       1     248 []      42     365 ..      42     365 .. 0.75

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 9.8e-80
                 E-GGGECTTC...-HHHHHHHHHHHHHHT.-S.SS..EEEEEEE-S---SE.EEEEEEEEEE--SS-EEEEEEEEETTEEEEEEEEEEE---T...... CS
      4HBT_3   1 trppwtpgga.g.yGGyvlAlalraaqrtvpdprl..hslhvyFlrpgdag.pviyhvervrdGrsfstrtvelsqggrpiftatasfgraes...... 88 
                 tr+ w p ga g yGG v+A++l+aaq+tvp+ ++  hs+h+yFl++g+ + p+++hvervrdGrs+ trtv+++q+g +ift+t+sf+r+++      
  CCE30857.1  42 TRKAWVPSGArGiYGGTVIAQCLAAAQKTVPE-GFlpHSCHCYFLLAGSGSvPILFHVERVRDGRSYVTRTVQARQRGSCIFTTTISFVREGAgagaga 139
                 6899*******88*******************.899********************************************************9899998 PP

                 ........---EE-------.GGGE---........--SSGGGS.GG..TEEEE-HHT---S..........................S-EEEEEEEET CS
      4HBT_3  89 ...tgwe.lepaaapppvpppdeaalaad.......eaplplfr.rvpgflepfeprpaegg...................kpdspagpkrvrqWvrlr 156
                    +g+  +++   + ++p+  + +l++        e   p++  +vp  + p        +                    ++++ ++ r++qW+r+r
  CCE30857.1 140 gkgEGVGvVRH---AVELPEEAKGSLPEGeyeceegEWGGPFQHvMVPMPAAP--------TldgkasgsgkengkgngigDGRKEPHQIRCQQWMRCR 227
                 77633333333...333433211122111111222222222222122222222........12222222233333333332222333356********* PP

                 .....TTS-SSHHHHHHHHTT-....-GGGGTSS-...........................................SB--EEEEEEEE-S--...S- CS
      4HBT_3 157 .....eggepahlaaLaylsDs.f..pvprvhglrld.......................aea..............sgwmpsldltiyfhrep...ae 207
                      egg +ahl+aLay+sDs f  +v+rvh+l++                        + +               g+m+sld++iyfh+ p   ++
  CCE30857.1 228 gkisaEGGLQAHLNALAYISDSgFvgTVARVHHLWRLpfppqeyhalpeeqkrrvehvarH-EglgddpegwkalphLGMMVSLDHSIYFHA-PgrvRA 324
                 ***9888999*************************55577788888887776666666550.0555666677888889*************9.754433 PP

                 ...EEEEEE-SEEETTEEEEEEEEE-TTS-EEEEEEEEEET CS
      4HBT_3 208 deWllleaetpwagdgrglvearlwdedGrlvAtstQeglv 248
                 deW+++++++pwagdgrg+v++r++ +dG+l+At++Qeg+v
  CCE30857.1 325 DEWMFADMDSPWAGDGRGFVTQRIFARDGTLLATCVQEGVV 365
                 9**************************************98 PP

>> Acyl_CoA_thio  Acyl-CoA thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.7e-06     0.033       7     101 ..      40     100 ..      35     133 .. 0.68
   2 !   10.4   0.0     5e-05      0.45      32      70 ..     221     262 ..     211     266 .. 0.78
   3 !   47.9   0.0   1.3e-16   1.2e-12      74     132 .]     305     364 ..     298     364 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.7e-06
                    EC-.SEEEECSSSSBTTCHHHHHEECCCCCCCCTS-TTHCCCCCHHHHHTTSSSGGGGGGGGTTTSTTEEEEEEEEEEE-S--BTTS-EEEEEEE CS
  Acyl_CoA_thio   7 eleypvevrpkelkrefgGqvvaekqsllrakktvPddallhsvllaYlSDltllltalttHelledslqvsldHsvyFlrpgdlnewilydves 101
                    +  ++  v+ +  +  +gG+v+a  q l +a+ktvP+ +l+hs+                              H  yFl  g    +il++ve+
     CCE30857.1  40 TNTRKAWVPSG-ARGIYGGTVIA--QCLAAAQKTVPEGFLPHSC------------------------------HC-YFLLAGSGSVPILFHVER 100
                    55555444444.77899******..*******************..............................55.555555555555555555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 5e-05
                    CCCCCCCCTS-TT..HCCCCCHHHHHTTSSSGGGGGGGGT.T CS
  Acyl_CoA_thio  32 qsllrakktvPdd..allhsvllaYlSDltllltalttHe.l 70 
                    q ++r ++++  +     h  +laY+SD+ ++ t+   H+ +
     CCE30857.1 221 QQWMRCRGKISAEggLQAHLNALAYISDSGFVGTVARVHHlW 262
                    7788888877754125667889**************999844 PP

  == domain 3  score: 47.9 bits;  conditional E-value: 1.3e-16
                    TEEEEEEEEEEE-S--BT..TS-EEEEEEEEEEETTEEEEEECCEEECTTEEEEEEEEEEE CS
  Acyl_CoA_thio  74 slqvsldHsvyFlrpgdl..newilydvespsasggrgLrqGriFstqdgkliasvqqeGl 132
                    ++ vsldHs+yF++pg++  +ew+  d+ sp a +grg++  riF  +dg+l+a+ +qeG+
     CCE30857.1 305 GMMVSLDHSIYFHAPGRVraDEWMFADMDSPWAGDGRGFVTQRIF-ARDGTLLATCVQEGV 364
                    6899***********9753279***********************.*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2848.34
//
Query:       CCE30858.1  [L=286]
Description: uncharacterized protein CPUR_04708 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-09   36.9   0.0    3.5e-09   36.3   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    3.1e-05   24.0   0.0     0.0012   18.8   0.0    2.1  2  APH             Phosphotransferase enzyme family
    0.00067   19.3   0.0       0.59    9.7   0.1    2.3  2  Choline_kinase  Choline/ethanolamine kinase
     0.0034   16.8   0.1     0.0048   16.3   0.1    1.1  1  Pkinase         Protein kinase domain
     0.0078   15.0   0.1      0.011   14.6   0.1    1.1  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.018   14.6   0.0      0.031   13.9   0.0    1.3  1  RIO1            RIO1 family
      0.021   14.2   0.0      0.032   13.6   0.0    1.2  1  EcKinase        Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.4e-12   3.5e-09     130     191 ..     213     273 ..     193     279 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.4e-12
         Kdo 130 liaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradrwrekdLarLkrsfl 191
                 + a+lh++g++H+d++  n+l++++ee+e e++liD++ ar r r++   e ++++Lk s++
  CCE30858.1 213 ALARLHQLGIKHGDINKYNFLVREGEEHEDEVVLIDFESAR-RDRPHVELEDEMKALKNSLE 273
                 679***********************************766.55588899999999999876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0039        10      38     108 ..     158     220 ..     129     223 .. 0.89
   2 !   18.8   0.0   4.8e-07    0.0012     158     205 ..     215     261 ..     210     272 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0039
                 HHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  38 rrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqv 108
                 + e a ++++ + gv  P+ l   t +   +++ ++ e+++g+  ++       p+ l+ +  +la+lhq+
  CCE30858.1 158 EIETAAYQWICDKGV-GPKFLGHLTEGPNGRIVGFVTEWLGGTRSAE-------PRDLDGCKKALARLHQL 220
                 668999*********.99***99999999999***************.......88888899999999987 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.8e-07
                 HH--SSS-EEEE-SS-SGGGEEEC......TTEEEEE---TT-EEEECCHHH CS
         APH 158 allpgelptvllHgDlhpgNllvd....pddgrvtGviDfedaglgpplyDl 205
                 a+l+   + ++ HgD++  N+lv+     +d  v  +iDfe a+   p+++l
  CCE30858.1 215 ARLH---QLGIKHGDINKYNFLVRegeeHEDEVV--LIDFESARRDRPHVEL 261
                 3444...79999***************7777777..********99999987 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0     0.001       2.6      14      52 ..     151     192 ..     139     222 .. 0.76
   2 !    9.7   0.1   0.00023      0.59     147     174 ..     222     252 ..     210     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.001
                     CTTCCHHHHHHHHHHHHHHTTSSS-EEEEE...TTEEEEE-- CS
  Choline_kinase  14 teelidretElvvfallserglgpklygif...enGrieefi 52 
                      + ++ +e E+  ++ + ++g+gpk++g     +nGri  f+
      CCE30858.1 151 ENYMYYMEIETAAYQWICDKGVGPKFLGHLtegPNGRIVGFV 192
                     5677889*******************9975223789999887 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00023
                     EE-S--SGGGEEE....-CTTEEEE--GTT- CS
  Choline_kinase 147 fcHnDlqegNill...nkeekklvlIDFEYa 174
                       H D+ + N+l+   +++e+++vlIDFE a
      CCE30858.1 222 IKHGDINKYNFLVregEEHEDEVVLIDFESA 252
                     569**********9988999*********66 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.9e-06    0.0048     109     153 ..     212     260 ..     207     273 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEESSSSCS CS
     Pkinase 109 egleylHskgiiHrDlKpeNiLidekge....lKitDFGlakelesssk 153
                 ++l+ lH+ gi H D+ + N+L+ e +e    + ++DF  a++ + + +
  CCE30858.1 212 KALARLHQLGIKHGDINKYNFLVREGEEhedeVVLIDFESARRDRPHVE 260
                 799*********************53334678*********98777665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   4.3e-06     0.011     315     360 ..     210     253 ..     205     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.3e-06
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlak 360
                     + k++ +L+ + gi H Di  +N l+ +  +e+e++ +LiD++ a 
      CCE30858.1 210 CKKALARLH-QLGIKHGDINKYNFLVRE-GEEHEDEVVLIDFESAR 253
                     668999***.*****************5.5667999******9985 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.2e-05     0.031     120     150 ..     215     250 ..     200     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
                 HHHHTSTEEESS-STTSEEE.....ETTEEEE--GT CS
        RIO1 120 klykeaglvHaDLSeyNvlv.....dedkvviIDvs 150
                 + +++ g+ H+D+++yN lv     +ed+vv+ID+ 
  CCE30858.1 215 ARLHQLGIKHGDINKYNFLVregeeHEDEVVLIDFE 250
                 456789999**********95555456789999985 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.2e-05     0.032     217     251 ..     222     255 ..     214     262 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
    EcKinase 217 lnHGDlwvnNimfkydeegepedvilvDFQlsryg 251
                 + HGD++  N++++  ee + ++v+l+DF  +r  
  CCE30858.1 222 IKHGDINKYNFLVREGEE-HEDEVVLIDFESARRD 255
                 78***********99877.79********988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2142.86
//
Query:       CCE30859.1  [L=283]
Description: uncharacterized protein CPUR_04709 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-10   40.8   0.1    2.9e-10   39.9   0.0    1.4  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    8.7e-06   25.5   0.0      0.076   12.6   0.0    2.2  2  Choline_kinase  Choline/ethanolamine kinase
    1.7e-05   24.9   0.1    0.00026   21.0   0.1    2.0  2  APH             Phosphotransferase enzyme family
     0.0029   17.0   0.0     0.0045   16.3   0.0    1.2  1  EcKinase        Ecdysteroid kinase
      0.003   16.9   0.0     0.0045   16.4   0.0    1.2  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.013   14.3   0.0      0.019   13.7   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
       0.16   11.6   0.0       0.22   11.1   0.0    1.2  1  FTA2            Kinetochore Sim4 complex subunit FTA2
       0.16   11.6   0.0       0.23   11.0   0.0    1.2  1  WaaY            Lipopolysaccharide core biosynthesis protein 


Domain annotation for each model (and alignments):
>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.5   5.6e+03     167     189 ..      93     115 ..      86     123 .. 0.69
   2 !   39.9   0.0   1.3e-13   2.9e-10     130     191 ..     210     270 ..     194     276 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.5
         Kdo 167 dkarlrlradrwrekdLarLkrs 189
                 +k +    +  w +  L++L++s
  CCE30859.1  93 EKVQFTEVKSVWHNVKLNELEFS 115
                 55555555677888888888887 PP

  == domain 2  score: 39.9 bits;  conditional E-value: 1.3e-13
         Kdo 130 liaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradrwrekdLarLkrsfl 191
                 + a+lh++g++H+d++ +n+l++++e +e e++liD++ ar+   ++   e ++++Lk s++
  CCE30859.1 210 ALARLHQLGIKHGDINRHNFLVREGERHEDEVVLIDFETARRNC-PRVELEDEMKALKNSLE 270
                 679************************************99999.88888899999999876 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   9.9e-05      0.22      17      52 ..     151     189 ..     138     220 .. 0.77
   2 !   12.6   0.0   3.4e-05     0.076     147     180 ..     219     255 ..     207     260 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.9e-05
                     CCHHHHHHHHHHHHHHTTSSS-EEEEE...TTEEEEE-- CS
  Choline_kinase  17 lidretElvvfallserglgpklygif...enGrieefi 52 
                     ++ +etE+ v++++ ++g+gpk++g     +nGri  f+
      CCE30859.1 151 ISYMETETAVYQRICDKGIGPKFLGHLtegPNGRIIGFV 189
                     6679*******************9975223788998887 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.4e-05
                     EE-S--SGGGEEE....-CTTEEEE--GTT-EEEEHH CS
  Choline_kinase 147 fcHnDlqegNill...nkeekklvlIDFEYagynyrg 180
                       H D+  +N+l+   + +e+++vlIDFE a  n+  
      CCE30859.1 219 IKHGDINRHNFLVregERHEDEVVLIDFETARRNCPR 255
                     56***********88888999********99999765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.016        37      38     108 ..     155     217 ..     151     220 .. 0.89
   2 !   21.0   0.1   1.1e-07   0.00026     158     198 ..     212     251 ..     207     258 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  38 rrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqv 108
                 + e a+++ + + g+  P+ l   t +   ++  ++ e+++g+  ++       p+ l+ +  +la+lhq+
  CCE30859.1 155 ETETAVYQRICDKGI-GPKFLGHLTEGPNGRIIGFVTEWLGGTRSAE-------PRDLDGCKKALARLHQL 217
                 568999999999999.99999988999999999**************.......88888899999999987 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.1e-07
                 HH--SSS-EEEE-SS-SGGGEEEC......TTEEEEE---TT-EE CS
         APH 158 allpgelptvllHgDlhpgNllvd....pddgrvtGviDfedagl 198
                 a+l+   + ++ HgD++ +N+lv+     +d  v  +iDfe+a+ 
  CCE30859.1 212 ARLH---QLGIKHGDINRHNFLVRegerHEDEVV--LIDFETARR 251
                 3444...79999**************99888888..******986 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     2e-06    0.0045     217     253 ..     219     254 ..     211     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2e-06
    EcKinase 217 lnHGDlwvnNimfkydeegepedvilvDFQlsrygSp 253
                 + HGD+++ N++++  e+ + ++v+l+DF ++r + p
  CCE30859.1 219 IKHGDINRHNFLVREGER-HEDEVVLIDFETARRNCP 254
                 78***********99876.79********99997766 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     2e-06    0.0045     109     148 ..     209     252 ..     204     268 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2e-06
                 HHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEES CS
     Pkinase 109 egleylHskgiiHrDlKpeNiLidekge....lKitDFGlakel 148
                 ++l+ lH+ gi H D+  +N+L+ e +     + ++DF  a++ 
  CCE30859.1 209 KALARLHQLGIKHGDINRHNFLVREGERhedeVVLIDFETARRN 252
                 799*********************52224677*******99975 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   8.6e-06     0.019     315     360 ..     207     250 ..     202     262 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.6e-06
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlak 360
                     + k++ +L+ + gi H Di  +N l+ + +  +e++ +LiD++ a 
      CCE30859.1 207 CKKALARLH-QLGIKHGDINRHNFLVREGE-RHEDEVVLIDFETAR 250
                     668999***.*****************654.55999******9985 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.9e-05      0.22     152     204 ..     180     230 ..     153     246 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.9e-05
        FTA2 152 gkkrpiraIVKelellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 g +  i ++V e   l +  + e+++l+   + l +lh+lgI + D++++n++
  CCE30859.1 180 GPNGRIIGFVTE--WLGGTRSAEPRDLDGCKKALARLHQLGIKHGDINRHNFL 230
                 55567999****..679999****************************99986 PP

>> WaaY  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001      0.23     145     182 ..     208     250 ..     201     271 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
        WaaY 145 kqsieklhqlgmvsgdphrgnfivkk.....devriidlsgkr 182
                 k+++ +lhqlg+  gd  r nf+v++     dev +id+   r
  CCE30859.1 208 KKALARLHQLGIKHGDINRHNFLVREgerheDEVVLIDFETAR 250
                 78999*******************8622222556666665433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2167.37
//
Query:       CCE30860.1  [L=286]
Description: uncharacterized protein CPUR_04710 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-09   36.5   0.1    5.2e-09   35.8   0.1    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    1.8e-05   24.8   0.0     0.0013   18.7   0.0    2.1  2  APH             Phosphotransferase enzyme family
    0.00078   19.1   0.0       0.74    9.4   0.0    2.3  2  Choline_kinase  Choline/ethanolamine kinase
     0.0038   16.6   0.1     0.0054   16.1   0.1    1.2  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.017   14.8   0.0      0.031   13.9   0.0    1.4  1  RIO1            RIO1 family
      0.024   13.4   0.1      0.035   12.9   0.1    1.2  1  Pkinase_fungal  Fungal protein kinase
      0.029   13.7   0.0      0.049   12.9   0.0    1.3  1  EcKinase        Ecdysteroid kinase
        0.1   12.2   0.0       0.16   11.6   0.0    1.2  1  FTA2            Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   2.3e-12   5.2e-09     129     192 ..     212     274 ..     191     279 .. 0.85

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.3e-12
         Kdo 129 rliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradrwrekdLarLkrsflk 192
                 ++ a+lh++g++H+d++  n+l++++e++e e++liD++ ar r r++   e ++++Lk s+++
  CCE30860.1 212 KALARLHQLGIKHGDINKYNFLVREGEGHEDEVVLIDFESAR-RDRPHVELEDEMKALKNSLES 274
                 5789***********************************766.556899999999999999764 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0022         5      35     108 ..     155     220 ..     114     223 .. 0.73
   2 !   18.7   0.0   5.7e-07    0.0013     158     205 ..     215     261 ..     210     276 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  35 eeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqv 108
                   ++ e a ++++ + g+  P+ l   t +   ++  ++ e+++g+  ++       p+ l+ +  +la+lhq+
  CCE30860.1 155 YYMEIETAAYQWICDKGI-GPKFLGHLTEGPNGRIIGFVTEWLDGTRSAE-------PRDLDGCKKALARLHQL 220
                 4456788999********.99***99999999999***************.......88888899999999987 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 5.7e-07
                 HH--SSS-EEEE-SS-SGGGEEEC......TTEEEEE---TT-EEEECCHHH CS
         APH 158 allpgelptvllHgDlhpgNllvd....pddgrvtGviDfedaglgpplyDl 205
                 a+l+   + ++ HgD++  N+lv+     +d  v  +iDfe a+   p+++l
  CCE30860.1 215 ARLH---QLGIKHGDINKYNFLVRegegHEDEVV--LIDFESARRDRPHVEL 261
                 3444...79999**************98888888..********99999987 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00033      0.74      14      80 ..     151     219 ..     139     223 .. 0.74
   2 !    8.2   0.0   0.00075       1.7     146     174 ..     221     252 ..     206     261 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00033
                     CTTCCHHHHHHHHHHHHHHTTSSS-EEEEE...TTEEEEE--TCEE--TTGGGCHHHHHHHHHHHHHHTT CS
  Choline_kinase  14 teelidretElvvfallserglgpklygif...enGrieefiesrtlstedlrepeiskkiAkklaelHs 80 
                      +e++ +e E+  ++ + ++g+gpk++g     +nGri  f+  + l+ +   ep+ ++   k la+lH+
      CCE30860.1 151 ENEMYYMEIETAAYQWICDKGIGPKFLGHLtegPNGRIIGFVT-EWLDGTRSAEPRDLDGCKKALARLHQ 219
                     568899********************99752237999999884.55666666666666666666666665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00075
                     EEE-S--SGGGEEE....-CTTEEEE--GTT- CS
  Choline_kinase 146 vfcHnDlqegNill...nkeekklvlIDFEYa 174
                        H D+ + N+l+   + +e+++vlIDFE a
      CCE30860.1 221 GIKHGDINKYNFLVregEGHEDEVVLIDFESA 252
                     5669**********77777899********66 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.4e-06    0.0054     109     153 ..     212     260 ..     207     276 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHTTEE-SS-SGGGEEEE.TTTE...EEE-SGTTSEESSSSCS CS
     Pkinase 109 egleylHskgiiHrDlKpeNiLid.ekge...lKitDFGlakelesssk 153
                 ++l+ lH+ gi H D+ + N+L+   +g+   + ++DF  a++ + + +
  CCE30860.1 212 KALARLHQLGIKHGDINKYNFLVReGEGHedeVVLIDFESARRDRPHVE 260
                 799*********************44444778*********98777666 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.4e-05     0.031     120     150 ..     215     250 ..     199     264 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
                 HHHHTSTEEESS-STTSEEE.....ETTEEEE--GT CS
        RIO1 120 klykeaglvHaDLSeyNvlv.....dedkvviIDvs 150
                 + +++ g+ H+D+++yN lv     +ed+vv+ID+ 
  CCE30860.1 215 ARLHQLGIKHGDINKYNFLVregegHEDEVVLIDFE 250
                 456789999**********95555456789999985 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.5e-05     0.035     315     360 ..     210     253 ..     205     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlak 360
                     + k++ +L+ + gi H Di  +N l+ +  + +e++ +LiD++ a 
      CCE30860.1 210 CKKALARLH-QLGIKHGDINKYNFLVREG-EGHEDEVVLIDFESAR 253
                     668999***.*****************55.556999******9985 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.2e-05     0.049     217     251 ..     222     255 ..     213     262 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.2e-05
    EcKinase 217 lnHGDlwvnNimfkydeegepedvilvDFQlsryg 251
                 + HGD++  N++++   eg+ ++v+l+DF  +r  
  CCE30860.1 222 IKHGDINKYNFLVREG-EGHEDEVVLIDFESARRD 255
                 78***********987.7799********988765 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.1e-05      0.16     152     204 ..     183     233 ..     154     239 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.1e-05
        FTA2 152 gkkrpiraIVKelellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 g +  i ++V e   l++  + e+++l+   + l +lh+lgI + D+++ n++
  CCE30860.1 183 GPNGRIIGFVTE--WLDGTRSAEPRDLDGCKKALARLHQLGIKHGDINKYNFL 233
                 5566799*****..679*******************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2236.61
//
Query:       CCE30861.1  [L=274]
Description: uncharacterized protein CPUR_04711 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-10   40.0   0.2    4.5e-10   39.2   0.2    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    7.3e-07   29.3   0.1    0.00013   22.0   0.2    2.1  2  APH             Phosphotransferase enzyme family
     0.0004   20.1   0.0       0.44   10.1   0.0    2.3  2  Choline_kinase  Choline/ethanolamine kinase
     0.0064   15.8   0.0     0.0094   15.3   0.0    1.2  1  EcKinase        Ecdysteroid kinase
     0.0099   15.3   0.1      0.014   14.8   0.1    1.1  1  Pkinase         Protein kinase domain
  ------ inclusion threshold ------
      0.063   12.0   0.1       0.11   11.3   0.1    1.2  1  Pkinase_fungal  Fungal protein kinase
       0.13   11.9   0.0       0.19   11.3   0.0    1.2  1  FTA2            Kinetochore Sim4 complex subunit FTA2
       0.22   11.1   0.0       0.35   10.4   0.0    1.2  1  WaaY            Lipopolysaccharide core biosynthesis protein 


Domain annotation for each model (and alignments):
>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.2     2e-13   4.5e-10     130     192 ..     210     271 ..     201     274 .] 0.88

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 2e-13
         Kdo 130 liaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradrwrekdLarLkrsflk 192
                 + a+lh++g++H+d++ +n+l++++e++e e++liD++ +r+   ++   e ++++Lk s+++
  CCE30861.1 210 ALARLHQLGIKHGDINRHNFLVREGEGHEDEVVLIDFETTRRDR-PHAELEDEMKALKNSLES 271
                 679***********************************877655.888889999999998764 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0011       2.4      37     108 ..     154     217 ..     118     220 .. 0.87
   2 !   22.0   0.2   5.8e-08   0.00013     158     205 ..     212     258 ..     207     260 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  37 irrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqv 108
                 ++ e a+++++ + g+  P+ l   t +   ++  ++ e+++g+ +++       p+ l+ +  +la+lhq+
  CCE30861.1 154 METETAVYQWICDKGI-GPKFLGHLTEGPNGRIIGFVTEWLGGTRPAE-------PRDLDGCKKALARLHQL 217
                 56799***********.99***99999999999***************.......88888999999999987 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 5.8e-08
                 HH--SSS-EEEE-SS-SGGGEEEC......TTEEEEE---TT-EEEECCHHH CS
         APH 158 allpgelptvllHgDlhpgNllvd....pddgrvtGviDfedaglgpplyDl 205
                 a+l+   + ++ HgD++ +N+lv+     +d  v  +iDfe+++   p+++l
  CCE30861.1 212 ARLH---QLGIKHGDINRHNFLVRegegHEDEVV--LIDFETTRRDRPHAEL 258
                 3444...79999**************98888888..********99999887 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0002      0.44      16      52 ..     150     189 ..     138     220 .. 0.79
   2 !    8.1   0.1    0.0008       1.8     145     172 ..     217     247 ..     201     251 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0002
                     TCCHHHHHHHHHHHHHHTTSSS-EEEEE...TTEEEEE-- CS
  Choline_kinase  16 elidretElvvfallserglgpklygif...enGrieefi 52 
                     e++ +etE+ v++ + ++g+gpk++g     +nGri  f+
      CCE30861.1 150 EISCMETETAVYQWICDKGIGPKFLGHLtegPNGRIIGFV 189
                     57789*******************9975223788998887 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0008
                     EEEE-S--SGGGEEE....-CTTEEEE--GT CS
  Choline_kinase 145 vvfcHnDlqegNill...nkeekklvlIDFE 172
                     +   H D+  +N+l+   + +e+++vlIDFE
      CCE30861.1 217 LGIKHGDINRHNFLVregEGHEDEVVLIDFE 247
                     5566***********77777899*******9 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.2e-06    0.0094     217     249 ..     219     250 ..     211     258 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.2e-06
    EcKinase 217 lnHGDlwvnNimfkydeegepedvilvDFQlsr 249
                 + HGD+++ N++++   eg+ ++v+l+DF + r
  CCE30861.1 219 IKHGDINRHNFLVREG-EGHEDEVVLIDFETTR 250
                 78***********987.7799********9877 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   6.3e-06     0.014     109     151 ..     209     255 ..     204     267 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.3e-06
                 HHHHHHHHTTEE-SS-SGGGEEEE.TTTE...EEE-SGTTSEESSSS CS
     Pkinase 109 egleylHskgiiHrDlKpeNiLid.ekge...lKitDFGlakeless 151
                 ++l+ lH+ gi H D+  +N+L+   +g+   + ++DF   ++ + +
  CCE30861.1 209 KALARLHQLGIKHGDINRHNFLVReGEGHedeVVLIDFETTRRDRPH 255
                 799*********************44444778******988776655 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   4.7e-05      0.11     315     358 ..     207     248 ..     203     262 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.7e-05
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDl 358
                     + k++ +L+ + gi H Di  +N l+ +  + +e++ +LiD++ 
      CCE30861.1 207 CKKALARLH-QLGIKHGDINRHNFLVREG-EGHEDEVVLIDFET 248
                     6689999**.*****************55.5569999****986 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.7e-05      0.19     152     204 ..     180     230 ..     153     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.7e-05
        FTA2 152 gkkrpiraIVKelellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 g +  i ++V e   l +  + e+++l+   + l +lh+lgI + D++++n++
  CCE30861.1 180 GPNGRIIGFVTE--WLGGTRPAEPRDLDGCKKALARLHQLGIKHGDINRHNFL 230
                 45567999****..679999****************************99986 PP

>> WaaY  Lipopolysaccharide core biosynthesis protein (WaaY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00016      0.35     144     181 ..     207     249 ..     199     267 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00016
        WaaY 144 ikqsieklhqlgmvsgdphrgnfivkk.....devriidlsgk 181
                  k+++ +lhqlg+  gd  r nf+v++     dev +id+   
  CCE30861.1 207 CKKALARLHQLGIKHGDINRHNFLVREgegheDEVVLIDFETT 249
                 578999*******************862222256777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2190.27
//
Query:       CCE30862.1  [L=314]
Description: uncharacterized protein CPUR_04712 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   18.6   1.9      0.002   17.9   0.0    2.1  2  F-box       F-box domain
  ------ inclusion threshold ------
       0.01   15.7   0.1      0.018   14.9   0.1    1.5  1  F-box_4     F-box
      0.029   14.3   0.1      0.029   14.3   0.1    2.3  3  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.4e-07     0.002       3      42 ..      45      84 ..      44      89 .. 0.93
   2 ?   -1.4   0.5      0.38   2.3e+03      22      30 ..     132     140 ..     120     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.4e-07
                HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHH CS
       F-box  3 lsrLPsevlrhILerLplsdllalrrVSkgwrilidsdrl 42
                l++LP e+l  +L +L+  +l  +rrV ++  +++ds+  
  CCE30862.1 45 LDQLPAELLVTVLLYLDIPSLTDFRRVNRRAMDIVDSVPQ 84
                679*********************************9875 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.38
                 HHHHHCTT- CS
       F-box  22 dllalrrVS 30 
                 +l+ +rrV+
  CCE30862.1 132 YLIDCRRVC 140
                 477799999 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1     3e-06     0.018       4      42 ..      44      82 ..      41     131 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3e-06
     F-box_4  4 sLssLPlevlqhiaslLDsfsLsqLslvskllrevcssl 42
                +L++LP e+l +++ +LD  sL+ + +v+++  ++  s+
  CCE30862.1 44 QLDQLPAELLVTVLLYLDIPSLTDFRRVNRRAMDIVDSV 82
                79****************************999998776 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   4.8e-06     0.029       2      36 ..      46      80 ..      45      85 .. 0.89
   2 ?   -1.8   0.0      0.49   2.9e+03      35      47 ..     106     118 ..     104     119 .. 0.84
   3 ?   -2.8   0.3         1   6.3e+03      21      28 ..     133     140 ..     120     142 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.8e-06
  F-box-like  2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrval 36
                ++LP E+L++++ yL+  +L+  ++V rr  +++ 
  CCE30862.1 46 DQLPAELLVTVLLYLDIPSLTDFRRVNRRAMDIVD 80
                68**************************9888875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.49
  F-box-like  35 aldtplLWrrlvl 47 
                 a+d+  L+++l++
  CCE30862.1 106 AFDCNVLYKTLST 118
                 578899****975 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1
  F-box-like  21 LlrlalVC 28 
                 L+ +++VC
  CCE30862.1 133 LIDCRRVC 140
                 55688888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2458.89
//
Query:       CCE30863.1  [L=277]
Description: uncharacterized protein CPUR_04713 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-10   38.2   0.3    1.2e-09   37.9   0.3    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    3.2e-07   30.5   0.3    0.00039   20.4   0.9    2.1  2  APH             Phosphotransferase enzyme family
     0.0018   17.7   0.2     0.0025   17.2   0.2    1.1  1  Pkinase         Protein kinase domain
     0.0023   16.8   0.1     0.0034   16.2   0.1    1.2  1  Pkinase_fungal  Fungal protein kinase
     0.0035   16.7   0.0     0.0052   16.1   0.0    1.2  1  EcKinase        Ecdysteroid kinase
     0.0093   15.6   0.0        1.4    8.4   0.0    2.3  2  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.3     4e-13   1.2e-09     129     194 ..     207     271 ..     186     277 .] 0.82

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 4e-13
         Kdo 129 rliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradrwrekdLarLkrsflkie 194
                 ++ a+lh++g++H+d++ +n+l++++e++e e+ liD+d ar+   ++   e ++++Lk  +++ +
  CCE30863.1 207 KVLARLHQLGIKHGDINRHNFLVREGEGHEDEVFLIDFDLARRDR-PHVELEDEMKALKNNLESTN 271
                 5689***********************************998665.78888888888888655443 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00017      0.49      21     108 ..     136     215 ..     120     218 .. 0.87
   2 !   20.4   0.9   1.3e-07   0.00039     157     205 ..     209     256 ..     206     264 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00017
                 --EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  21 gryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqv 108
                 g+++++++  +++ + i+ e a+++++ + gv  P+ l   t +   ++  ++ e+++g+  ++       p+ l+ +  +la+lhq+
  CCE30863.1 136 GPVLMKLAVWPWEVAWIETETAVYQWICDKGV-GPKFLGHLTEGPNGRIIGFITEWLDGTRSAE-------PRDLDGCKKVLARLHQL 215
                 48888888888999999***************.99***99999999999***************.......89999999999999998 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.3e-07
                 HHH--SSS-EEEE-SS-SGGGEEEC......TTEEEEE---TT-EEEECCHHH CS
         APH 157 aallpgelptvllHgDlhpgNllvd....pddgrvtGviDfedaglgpplyDl 205
                 +a+l+   + ++ HgD++ +N+lv+     +d  +  +iDf++a+   p+++l
  CCE30863.1 209 LARLH---QLGIKHGDINRHNFLVRegegHEDEVF--LIDFDLARRDRPHVEL 256
                 45555...78999*************997777777..********99999987 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   8.3e-07    0.0025     110     153 ..     208     255 ..     203     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.3e-07
                 HHHHHHHTTEE-SS-SGGGEEEE.TTTE...EEE-SGTTSEESSSSCS CS
     Pkinase 110 gleylHskgiiHrDlKpeNiLid.ekge...lKitDFGlakelesssk 153
                  l+ lH+ gi H D+  +N+L+   +g+   + ++DF+la++ + + +
  CCE30863.1 208 VLARLHQLGIKHGDINRHNFLVReGEGHedeVFLIDFDLARRDRPHVE 255
                 5788*******************44444778*********98777665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.1e-06    0.0034     317     360 ..     207     248 ..     201     262 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-06
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlak 360
                     k + +L+ + gi H Di  +N l+ +  + +e++ +LiD+Dla 
      CCE30863.1 207 KVLARLH-QLGIKHGDINRHNFLVREG-EGHEDEVFLIDFDLAR 248
                     6788999.*****************55.556999********96 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.7e-06    0.0052     217     253 ..     217     252 ..     207     257 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.7e-06
    EcKinase 217 lnHGDlwvnNimfkydeegepedvilvDFQlsrygSp 253
                 + HGD+++ N++++   eg+ ++v l+DF l+r   p
  CCE30863.1 217 IKHGDINRHNFLVREG-EGHEDEVFLIDFDLARRDRP 252
                 78***********987.7799*********9987665 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00048       1.4      20      80 ..     152     214 ..     146     218 .. 0.72
   2 !    5.3   0.1    0.0042        13     145     174 ..     215     247 ..     202     256 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00048
                     HHHHHHHHHHHHHTTSSS-EEEEE...TTEEEEE--TCEE--TTGGGCHHHHHHHHHHHHHHTT CS
  Choline_kinase  20 retElvvfallserglgpklygif...enGrieefiesrtlstedlrepeiskkiAkklaelHs 80 
                      etE+ v++ + ++g+gpk++g     +nGri  fi  + l+ +   ep+ ++   k la+lH+
      CCE30863.1 152 IETETAVYQWICDKGVGPKFLGHLtegPNGRIIGFIT-EWLDGTRSAEPRDLDGCKKVLARLHQ 214
                     689*****************99752237999999984.45555555555555555555555555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0042
                     EEEE-S--SGGGEEE....-CTTEEEE--GTT- CS
  Choline_kinase 145 vvfcHnDlqegNill...nkeekklvlIDFEYa 174
                     +   H D+  +N+l+   + +e++++lIDF  a
      CCE30863.1 215 LGIKHGDINRHNFLVregEGHEDEVFLIDFDLA 247
                     5566***********77777899*******866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2154.67
//
Query:       CCE30864.1  [L=1264]
Description: related to oxysterol-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.5e-132  441.9   0.0   1.1e-131  439.1   0.0    2.1  2  Oxysterol_BP  Oxysterol-binding protein
    3.2e-15   56.0   0.1    8.3e-09   35.5   0.0    3.5  3  Ank_5         Ankyrin repeats (many copies)
    2.7e-13   50.1   0.0    1.1e-08   35.5   0.0    3.1  3  Ank_4         Ankyrin repeats (many copies)
    1.1e-12   48.3   0.0    6.6e-09   36.2   0.0    2.9  2  Ank_2         Ankyrin repeats (3 copies)
    1.2e-12   46.7   0.0    0.00012   22.2   0.0    3.8  3  Ank_3         Ankyrin repeat
    1.5e-11   44.1   0.1    0.00012   22.4   0.0    4.0  3  Ank           Ankyrin repeat
    2.6e-11   44.0   0.9    5.8e-11   42.8   0.9    1.7  1  PH            PH domain
      2e-07   31.2   1.2    4.4e-07   30.1   1.2    1.6  1  PH_8          Pleckstrin homology domain
    2.5e-05   24.6   3.3    7.2e-05   23.2   3.3    1.8  1  PH_11         Pleckstrin homology domain
  ------ inclusion threshold ------
      0.025   14.7   0.4       0.06   13.5   0.4    1.6  1  Mcp5_PH       Meiotic cell cortex C-terminal pleckstrin homol
       0.25   11.8   9.0      0.065   13.7   1.8    2.7  2  DUF4757       Domain of unknown function (DUF4757)


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.8      0.29   4.8e+02     214     268 ..     439     503 ..     418     536 .. 0.64
   2 !  439.1   0.0  6.6e-135  1.1e-131       1     373 []     862    1236 ..     862    1236 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.29
                   EEE....TTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT...-....BSXXGCGSSTTBCCC CS
  Oxysterol_BP 214 vkd....kkkevlyeisGkwdeelyikkkktekkeeeedasek...s....kvkekeeqeefesek 268
                   + +    +++++++ei Gk + +++++ ++ e + ++ ++  +   +    ++ke+e+q  +++e+
    CCE30864.1 439 IAKlhmsADEKTKFEIIGKSSVKYTMR-ANHEVEAKRWFWALNnsiQwtkdQAKEEEKQAARSAEM 503
                   333333488999999999999999994.45555666666666644413333444444444444443 PP

  == domain 2  score: 439.1 bits;  conditional E-value: 6.6e-135
                    HHHCCHTTSTT-BCCCS---GGGEEEEEHHHHHHHCCTTCHHHHHHHC.SSHHHHHHHHHHHHHHCCCGCTSTSSSEEE---TT-EEEEEETTCE CS
  Oxysterol_BP    1 slwsilkkciGkDLskislPvffneplSlLqrlaedleyselLdkaakeddsleRlayVaaFalSsyastikrrlkKPFNPlLGEtfelvredkg 95  
                    slw ilk++iGkD+sk++lPv+fnep+SlL r+ ed+ey++lLd aa+  ds+eRl+yVaaFa S+yasti +r++KPFNPlLGEtfe+vr+dk+
    CCE30864.1  862 SLWGILKSMIGKDMSKMTLPVSFNEPTSLLYRCGEDMEYADLLDLAAERADSIERLVYVAAFAASEYASTI-GRVAKPFNPLLGETFEYVRPDKN 955 
                    79**********************************************999********************.9********************** PP

                    EEEEEEEEETTTTEEEEEEEECTEEEEEEEEEEEEE-SSEEEEEE-SEEEEEEEEE...SEEEEEEE--EEEEE-TTTTS-EEEEEEEEEEEETT CS
  Oxysterol_BP   96 frfiaEQVsHhPpvsAfhaesegweldgeikvkskflgkslevkpeGtahlellkk...sgehYtwtkpttivhniivgklwvelsgeveitnhs 187 
                    +rf+ EQVsHhPp+ A +aes++we++ge++v+skf+gks++++p Gt++l+l++k   ++e Ytw+k+t++v +ii+g+++v+++g +ei+n +
    CCE30864.1  956 YRFFIEQVSHHPPIGAAWAESPNWEYWGESAVRSKFYGKSFDINPLGTWFLKLRPKaggKEELYTWKKVTSSVIGIITGNPTVDNYGPMEIKNWT 1050
                    *****************************************************43345599********************************** PP

                    T--EEEEEEE---SSS---SSEEEEEEEETTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT-..BSXXGCGSSTTBCCCCCCH-----... CS
  Oxysterol_BP  188 tgdkakleFkkkglfsskksnkvegkvkdkkkevlyeisGkwdeelyikkkktekkeeeedaseks..kvkekeeqeefeseklWkasplpkaee 280 
                    tg+ a l+Fk++g+  ++++++++gkv d++++v++++ G+w+++ly++ +     e ++d s+     +ke +  + ++  ++W+a+p+p+   
    CCE30864.1 1051 TGEVALLDFKARGWK-ASSAYQISGKVLDAQGNVRVSMGGRWNSKLYARLTPGF--EANVDGSKDAgpLHKEGSMADPNRVYLVWEANPRPE--G 1140
                    *************77.689*****************************666654..455555555333888888889999999****99984..5 PP

                    .GGG--HHHHCCT---.TT.GGS-TTBGGG-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCCTT.----SSEEEEETTTTSSCEEEC-S-HH CS
  Oxysterol_BP  281 .yygftkfavtlNeieeke.kslaptDsRlRpDqraleegdideAeeeKkrlEekQRerrkereekk.ewkpkwFekekdpdtgeevwkykgeyw 372 
                     ++++t+f +t N+i+++  ++laptDsRlRpDqra+e+g++d A++eK+rlEe+QR+rrkere+++ e+ p wF+k   +++ge++wk++g yw
    CCE30864.1 1141 iPFNLTPFVLTFNHIDDQLrPWLAPTDSRLRPDQRAMEDGEYDFAASEKTRLEEAQRARRKEREARGeEFSPAWFTKARCEVSGETYWKFSGRYW 1235
                    5***************9889*******************************************666648************************** PP

                    H CS
  Oxysterol_BP  373 e 373 
                    e
    CCE30864.1 1236 E 1236
                    7 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.1e-07   0.00067      15      52 ..     154     194 ..     148     194 .. 0.93
   2 !   35.5   0.0   5.1e-12   8.3e-09       4      56 .]     180     232 ..     177     232 .. 0.97
   3 !   11.1   0.0   0.00023      0.38      15      52 ..     298     334 ..     290     334 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.1e-07
       Ank_5  15 ggntpLhvAakygaadvvrlLl...argadlnltdsrGlta 52 
                 + +t+Lh+A+ +  ++vv++ +    +g+d+n++d++G+++
  CCE30864.1 154 EDTTVLHLAIQCAEFPVVEYVMsdsGHGVDINARDKDGNSP 194
                 557***********************************987 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 5.1e-12
       Ank_5   4 hgpadvnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56 
                 hg +d+n++d++gn+pLh+Aa +g+ +vv+lLl     +  + + +G+++ldlA
  CCE30864.1 180 HG-VDINARDKDGNSPLHIAAIQGRTPVVKLLLdQADINDAVVNHQGQLPLDLA 232
                 55.9*************************************************9 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00023
       Ank_5  15 ggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                 gg t Lh Aa+++  +++++Ll +g d++ +d  G+++
  CCE30864.1 298 GG-TLLHEAARKRDTQLIEVLLLHGGDPFRRDRKGKLP 334
                 44.*****************************999876 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   6.5e-12   1.1e-08       2      55 .]     156     211 ..     156     211 .. 0.94
   2 !   22.0   0.0   1.1e-07   0.00017       2      53 ..     192     240 ..     191     241 .. 0.79
   3 ?    6.1   0.0     0.011        17       3      35 ..     300     331 ..     298     334 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 6.5e-12
       Ank_4   2 ltaLhyaai...sgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+Lh a++   +  +e+v++   +g+dina+ +++G+++lhiAa  g+  ++klLl
  CCE30864.1 156 TTVLHLAIQcaeFPVVEYVMSDSGHGVDINAR-DKDGNSPLHIAAIQGRTPVVKLLL 211
                 589999999999999999999999********.***********************8 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 1.1e-07
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaq.dnrsGetalhiAakrgnveilkl 53 
                 +++Lh aai+gr+++v+lLl+  adin    n +G+ +l+ A    n+ei++l
  CCE30864.1 192 NSPLHIAAIQGRTPVVKLLLD-QADINDAvVNHQGQLPLDLA---RNPEIFQL 240
                 79******************5.555555557888*****999...66666665 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.011
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsG 35 
                 t+Lh aa + +++l++ Ll +g d+ ++ +r G
  CCE30864.1 300 TLLHEAARKRDTQLIEVLLLHGGDPFRR-DRKG 331
                 8899999999999999999999999999.8777 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0     4e-12   6.6e-09      28      80 ..     157     217 ..     134     254 .. 0.60
   2 !    8.9   0.0    0.0013       2.2      50      82 ..     294     327 ..     256     371 .. 0.74

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 4e-12
       Ank_2  28 taLhyAakngnleivklLle...h......adndgrtpLhyAarsghleivklLlekgadin 80 
                 t+Lh+A++     +v++ ++   h       d+dg++pLh+Aa +g++ +vklLl+  adin
  CCE30864.1 157 TVLHLAIQCAEFPVVEYVMSdsgHgvdinaRDKDGNSPLHIAAIQGRTPVVKLLLD-QADIN 217
                 55555555554444555555333244433222555555555555555555555553.34554 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0013
       Ank_2  50 d.ndgrtpLhyAarsghleivklLlekgadinlk 82 
                 + ++g t Lh Aar+  ++++++Ll +g d+ ++
  CCE30864.1 294 TvQTGGTLLHEAARKRDTQLIEVLLLHGGDPFRR 327
                 2355667777777776667777666555555444 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0072        12       4      31 .]     157     186 ..     157     186 .. 0.95
   2 !   22.2   0.0   7.3e-08   0.00012       1      30 [.     190     217 ..     190     218 .. 0.95
   3 !   13.1   0.0   6.6e-05      0.11       2      29 ..     298     324 ..     297     325 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0072
       Ank_3   4 tpLhlAarsgnleivkfLle..nkgadvna 31 
                 t LhlA+ ++ +++v++      +g+d+na
  CCE30864.1 157 TVLHLAIQCAEFPVVEYVMSdsGHGVDINA 186
                 89********************99****96 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 7.3e-08
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G++pLh+Aa +g++++vk+Ll+   ad+n
  CCE30864.1 190 DGNSPLHIAAIQGRTPVVKLLLD--QADIN 217
                 69*********************..89998 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 6.6e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G t+Lh+Aar  ++ +++ Ll  +g d+
  CCE30864.1 298 GGTLLHEAARKRDTQLIEVLLL-HGGDP 324
                 77********************.78886 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0049       8.1       4      32 .]     157     189 ..     155     189 .. 0.79
   2 !   22.4   0.0   7.1e-08   0.00012       1      28 [.     190     217 ..     190     222 .. 0.86
   3 !    9.8   0.0    0.0007       1.1       4      31 ..     300     328 ..     298     329 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0049
                 BHHHHHHHHTTHHHHHHHH....TTTSTTCBTT CS
         Ank   4 TPLHlAatngkkriiklLL....hGAnlnaldn 32 
                 T+LHlA++++   ++++      hG ++na+d+
  CCE30864.1 157 TVLHLAIQCAEFPVVEYVMsdsgHGVDINARDK 189
                 9*****9555555***988875557*****995 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 7.1e-08
                 TSBBHHHHHHHHTTHHHHHHHHTTTSTT CS
         Ank   1 dGnTPLHlAatngkkriiklLLhGAnln 28 
                 dGn+PLH+Aa  g + ++klLL+ A++n
  CCE30864.1 190 DGNSPLHIAAIQGRTPVVKLLLDQADIN 217
                 9*********666677******889*97 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0007
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 T LH Aa+  +++ i+ LL hG ++  +d
  CCE30864.1 300 TLLHEAARKRDTQLIEVLLlHGGDPFRRD 328
                 99*****8888*****8888*87987666 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.9   3.6e-14   5.8e-11       2     104 ..     391     483 ..     390     484 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 3.6e-14
                 EEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHH CS
          PH   2 vkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWikai 100
                 +++G+L+k+++ +k +++ rwfvL d++l+yyk + ++  +  +g i+++ ++        ++++k +fe++ +  ++  +y+++a+ e e+k+W  a+
  CCE30864.1 391 EMKGYLKKWTNYRK-GYQLRWFVLEDGVLSYYKHQ-DDAGSACRGAINMKIAKLHM-----SADEKTKFEIIGK--SS-VKYTMRANHEVEAKRWFWAL 479
                 79************.********************.9999*********9999965.....9*********666..55.9******************* PP

                 HHHH CS
          PH 101 qsai 104
                 +++i
  CCE30864.1 480 NNSI 483
                 9987 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   1.2   2.7e-10   4.4e-07       4      87 ..     396     481 ..     394     483 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.7e-10
        PH_8   4 lkkrrkklqgyakRfFvLdlksstlsYyrddnss..alrgkiplsla..iisaneekreiiidsGaev.WeLkasnekdfqeWvealek 87 
                 lkk     +gy+ R+FvL  + + lsYy++++++  a rg+i +++a   +sa+e+ +++ i     v ++++a+ e ++++W  al++
  CCE30864.1 396 LKKWTNYRKGYQLRWFVL--EDGVLSYYKHQDDAgsACRGAINMKIAklHMSADEK-TKFEIIGKSSVkYTMRANHEVEAKRWFWALNN 481
                 67888889**********..9*******988776669*********9433444444.4454444444439**************99986 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   3.3   4.4e-08   7.2e-05       1      59 [.     392     482 ..     392     513 .. 0.59

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.4e-08
       PH_11   1 vkGyl..kkkgskaWkrrwfavlkdgvLeyYk........................sekkkv.......vkhviklSngseaklkadlisaa 59 
                 +kGyl  + ++ k+++ rwf vl+dgvL+yYk                        +ek k        vk+ +++    eak  + + +++
  CCE30864.1 392 MKGYLkkWTNYRKGYQLRWF-VLEDGVLSYYKhqddagsacrgainmkiaklhmsaDEKTKFeiigkssVKYTMRANHEVEAKRWFWALNNS 482
                 5788633679999*******.***********777777776665555555555544444444444444444444444444444333333333 PP

>> Mcp5_PH  Meiotic cell cortex C-terminal pleckstrin homology
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   3.7e-05      0.06      11      81 ..     455     517 ..     448     541 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.7e-05
     Mcp5_PH  11 iGeylyKyvrkrkskgssekrhkryvwihpyertllWsskqPksekakegksks.vaiesvlsvedenplpk 81 
                 iG    Ky+ +     ++e   kr++w    ++ + W++ q k e++++++s + ++i   ++ e+++ +p+
  CCE30864.1 455 IGKSSVKYTMRA----NHEVEAKRWFWA--LNNSIQWTKDQAKEEEKQAARSAEmLKI---AKAEQNSLSPQ 517
                 566667888887....6899*******5..6789*****8887777777666664555...44444444444 PP

>> DUF4757  Domain of unknown function (DUF4757)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.8      0.26   4.2e+02      66      96 ..     486     516 ..     440     538 .. 0.68
   2 ?   13.7   1.8     4e-05     0.065     104     171 ..     677     743 ..     608     744 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.26
     DUF4757  66 lverlkeklsdderSkslsdiraeelsllsa 96 
                 + ++ ke+ ++ +rS+++ +i+++e+++ls+
  CCE30864.1 486 TKDQAKEEEKQAARSAEMLKIAKAEQNSLSP 516
                 2334566777889999999999998554433 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4e-05
     DUF4757 104 elqkirnqlkEeedkWqdDLarWKsrRRsassdLikKeeErkkiEkltseeeasserrksKtfrEive 171
                  + ++    k+ ++ Wq  L+r  + RR   + +++   E +++E ++ e e+++ r ++K +rE++e
  CCE30864.1 677 LVGDLLRISKDRDAYWQYRLDREADLRRMWEESMQQVAREHEELEARMGEAEEKR-RLTKKALREVME 743
                 555555667999**********************************998885544.44559*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       978  (0.0545485); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.81u 0.25s 00:00:01.06 Elapsed: 00:00:00.39
# Mc/sec: 9675.24
//
Query:       CCE30865.1  [L=396]
Description: uncharacterized protein CPUR_04715 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2825.23
//
Query:       CCE30866.1  [L=755]
Description: uncharacterized protein CPUR_04716 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-35  121.9  16.6    4.6e-32  110.3   4.3    4.5  6  DUF3433   Protein of unknown function (DUF3433)


Domain annotation for each model (and alignments):
>> DUF3433  Protein of unknown function (DUF3433)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.03   5.3e+02      26      52 ..     105     133 ..      99     153 .. 0.68
   2 ?   -4.4   0.4         1   1.8e+04      69      77 ..     180     188 ..     176     196 .. 0.49
   3 !   26.1   4.5     5e-10   8.9e-06       1      90 [.     216     302 ..     216     303 .. 0.91
   4 ?   -3.3   0.6      0.75   1.3e+04      75      76 ..     332     333 ..     313     356 .. 0.58
   5 ?   -3.2   0.6      0.67   1.2e+04      61      72 ..     491     502 ..     479     510 .. 0.46
   6 !  110.3   4.3   2.5e-36   4.6e-32       1      91 []     534     625 ..     534     625 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.03
     DUF3433  26 rrlaPFaaLah..rgataersllldyrat 52 
                  r+aPF++L+        e+  ll++r  
  CCE30866.1 105 ERTAPFESLSAqeISCDRENQALLSTRYS 133
                 699******84353334444556655554 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 1
     DUF3433  69 valvslvtl 77 
                 val+ l+t+
  CCE30866.1 180 VALSVLMTV 188
                 444444443 PP

  == domain 3  score: 26.1 bits;  conditional E-value: 5e-10
     DUF3433   1 flvsflpalvavlisllwaaldaavrrlaPFaaLahrgataersllldyratlpflallralrnrhwlvalvslvtllsellpvlasglf 90 
                 f++++lp+l+a +i+++ + + +a  r+aPF aLa ++++++r l l ++++ p + ll  l  + w + +  ++t+l++++++l s++f
  CCE30866.1 216 FVFRILPQLLAGVILIYAQNIVTASLRIAPFTALA-KEDPQKRYLAL-FQSLYPKTFLLPQLS-GPWQLKAFGIATWLMNFTVPLQSAAF 302
                 89*********************************.89999976666.788888888888887.89**********************99 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 0.75
     DUF3433  75 vt 76 
                 ++
  CCE30866.1 332 LS 333
                 11 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 0.67
     DUF3433  61 alrnrhwlvalv 72 
                 al ++ +++al+
  CCE30866.1 491 ALVTGSLVLALL 502
                 333333332222 PP

  == domain 6  score: 110.3 bits;  conditional E-value: 2.5e-36
     DUF3433   1 flvsflpalvavlisllwaaldaavrrlaPFaaLa.hrgataersllldyratlpflallralrnrhwlvalvslvtllsellpvlasglfy 91 
                 fl+sflpa++++++++++++ld a+r+l+P+a ++   ga+a+rs+l+dy+a+lpf+a+++al n+hw+va++sl++ l+ ++p+la+glf+
  CCE30866.1 534 FLYSFLPAALGMVMFIVFQSLDKALRMLQPWADMSgLDGAPASRSILADYAACLPFQAPWKALSNGHWRVAVISLMSTLFIFIPILAGGLFM 625
                 9**********************************67*****************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 5616.42
//
Query:       CCE30867.1  [L=1173]
Description: uncharacterized protein CPUR_04717 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-24   83.9   1.5    2.4e-23   82.2   1.5    1.9  1  Pirin      Pirin
  ------ inclusion threshold ------
        3.5    6.8   4.5          7    5.8   4.5    1.6  1  Zip        ZIP Zinc transporter
        3.8    6.9  16.7         11    5.3  16.7    1.8  1  SelP_N     Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   1.5   3.9e-27   2.4e-23      10     107 ..      79     195 ..      71     196 .. 0.87

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 3.9e-27
                 C...TTCCEECTCEECCEEESS.S.ETT.....EEEE..T-EEEEEEEBSEEEEEEEECSEEEEEETT...S-EE.......EEETT-EEEEE-TT-EE CS
       Pirin  10 k..aaelqsvdpFlfldefdpaelevge.....edvi..gagfpphphrgletvtylleGevehrDsl...Gnkg.......virpGdvqwmtAgsGiv 89 
                 +  + +l+++++F+f+d ++pa +++g+     ed+i  + gfp+h hr++e+ ty+l+Ge++hrDs+   G++g       +++ Gdvq  t g+Gi+
  CCE30867.1  79 HsdHGWLNTYHSFSFADWYNPAFTQFGAlrvlnEDRIkaNSGFPTHAHRDFEIFTYVLSGELTHRDSMltkGQEGgqsdkfyRMHRGDVQFTTGGTGIA 177
                 34489********************************9999*************************97444333333333335899************* PP

                 EEEEE-SSSS-EEEEEEE CS
       Pirin  90 hsEmneeeeesleglqlW 107
                 hsE+ne+e+e+ ++lq+W
  CCE30867.1 178 HSEFNEHESETGHFLQIW 195
                 ****************** PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   4.5    0.0012         7     108     176 ..     659     727 ..     632     839 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0012
         Zip 108 ektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedk 176
                  +++++++  + ++++++   n +v ++ +   h ++++++++++++++++kq+++  +++q  ++ d+
  CCE30867.1 659 SQQHMHQDPRTVAQGTVQPPRNPTVGSTAKQPMHHHHHHHHHQQQQQQQQQKQSSPPRQQQQMPHQFDT 727
                 445555555555666666666666666666555555555555544444444444444444443322222 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  16.7    0.0019        11     156     225 ..     652     722 ..     630     732 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0019
      SelP_N 156 esseaeeeckevtkaaeekpaeaeektehehahshkqghkhhekhghhHkekeelsesqqee.peeeekpa 225
                 + +++e + +++ +++++ ++ + + +++++  s  ++  hh++h+hhH++++++++++q++ p ++++ +
  CCE30867.1 652 QGASSEPSQQHMHQDPRTVAQGTVQPPRNPTVGSTAKQPMHHHHHHHHHQQQQQQQQQKQSSpPRQQQQMP 722
                 44444445555555555555555556666666666555566666666677766666666666344444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1772  (0.0988343); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.08u 0.29s 00:00:01.37 Elapsed: 00:00:00.48
# Mc/sec: 7399.95
//
Query:       CCE30868.1  [L=521]
Description: related to D-arabinono-1,4-lactone oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-91  306.1   1.4    3.9e-91  305.5   1.4    1.2  1  ALO            D-arabinono-1,4-lactone oxidase
    1.7e-29  102.3   0.1    2.3e-29  101.9   0.1    1.2  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> ALO  D-arabinono-1,4-lactone oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.5   1.4   4.4e-95   3.9e-91       1     258 [.     198     484 ..     198     486 .. 0.98

  Alignments for each domain:
  == domain 1  score: 305.5 bits;  conditional E-value: 4.4e-95
         ALO   1 vtlrvvpaftlkskqevikfetllenw.dellkssefirvwwfPytekavvwrankteepeeskprkslkdellgrlvyeallalsrifpsltplverf 98 
                 vt+r+vpaftlk++q++++  +l+++w d+l+++sef+rvwwfPyt++ vvw+a+kt+++  ++pr s++d +lg+++y++ll +++ +ps+ p++e+f
  CCE30868.1 198 VTFRAVPAFTLKWTQTIDTDYKLFQSWpDNLWNQSEFVRVWWFPYTRRTVVWQADKTSDAL-REPRRSYYDGFLGYYIYHNLLYAAQFVPSMLPWIEWF 295
                 8**************************77888****************************9.************************************* PP

         ALO  99 vfklqyg....kgdeavqdsyevfnmdclvsqfvnEwaiplekgpevLrelkaliekaa................elkvhfPievRcsnad......rp 171
                 vf++qyg    ++++avq+s +++ m+cl+sqfvnEwaipl+kgpe+Lr+l++++++ +                +l++h+P+evR+s+++      rp
  CCE30868.1 296 VFGMQYGfangSTSSAVQPSRKALLMNCLYSQFVNEWAIPLHKGPEALRRLSSWLNHLTpedpdyvphnipfsaeGLYIHAPMEVRVSDTTlspskpRP 394
                 *********9999********************************************999*************************************** PP

         ALO 172 lL.svtndrdtlyinatmYrpfetnvp.tekyfkafedimkkagGrPHWaKnflltaedlkelY.pdlkkflkvRkklDPegvFlnewle 258
                 +L  +  d +tly+nat Yrp+ +++p  ++y++afe++m+++gGrPHWaKnf     d++ +Y ++l k+++vR+++DPeg+F+++w++
  CCE30868.1 395 YLdPTVTDGPTLYLNATLYRPYWRDPPcRDRYYEAFEWLMRDMGGRPHWAKNFEAYRPDIEAMYgENLLKYRSVRDEVDPEGMFVGPWHR 484
                 **545689*******************99***********************************************************97 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.1   2.6e-33   2.3e-29       1     139 []      39     174 ..      39     174 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 2.6e-33
                    EEEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTC CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglpvlvrGgGssllgqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgi 96 
                    p+++++pes +e+++++ la++ + ++++ G G+s +   + t+ ++++l+r+n+il++d+e+g+++ e+G++l +l eal+++gl+ + + gs++
     CCE30868.1  39 PQLYIQPESLAEIEKVVSLARKCRERIVTTGCGHSPSNITC-TSSWMVNLDRFNKILSVDRESGVVVMESGIRLYALCEALEKYGLAMP-NLGSIN 132
                    799**********************************9998.***************************************99999988.****** PP

                    GSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEEE CS
  FAD_binding_4  97 pgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrls 139
                    +++++Gai+t+++G  s ++Gl+++ vl l+v +adG+++ +s
     CCE30868.1 133 QQSIAGAISTGTHG-SSVQHGLMSEDVLALKVTMADGTTRACS 174
                    **************.99999******************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3674.13
//
Query:       CCE30869.1  [L=682]
Description: uncharacterized protein CPUR_04719 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-22   80.2  27.9    1.4e-22   80.2  27.9    1.5  2  SSF       Sodium:solute symporter family
  ------ inclusion threshold ------
      0.017   15.2   0.0      0.037   14.1   0.0    1.5  1  DUF1676   Protein of unknown function (DUF1676)
       0.13   12.2   0.0       0.44   10.5   0.0    1.8  1  S19       Chorion protein S19 C-terminal


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2  27.9   2.3e-26   1.4e-22       1     406 []      48     465 ..      48     465 .. 0.83
   2 ?   -4.0   0.0      0.84     5e+03     334     359 ..     562     587 ..     558     590 .. 0.77

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 2.3e-26
         SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlav.vllelgalllvllllll.laerlrnagalTlpdylskRfkgkrilvylsalslllvi 97 
                 + +agr + +  +++++ +s   aa ++  +G+ + +G+++ ++++ ga++ +ll   l +  + r  +a T+ +++++R++       + ++  l+  
  CCE30869.1  48 FNTAGRTMKSGIVAAAVVSSWTWAATLLQSSGVCYRYGVSGpFWYASGATVQILLFATLaITLKKRAPNAHTFLEVIRARYGAPA-HLTF-ICFGLVTN 144
                 568************************************87489999999988876655144556689**************998.2222.33344444 PP

         SSF  98 tlklsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlm..lvgalilliivllev.Ggleslveklkeaapkv.vdlltp 192
                 +l     + gga+ ++ + G+   +a++l+ + ++ Yt++GGl A+  td + +v++  ++ ++ l+ ++ ++v G+ +++ + l eaa +  v+ ++ 
  CCE30869.1 145 ILVSLMLIAGGAATVNALTGVHAVAAIFLMPIPVVAYTFVGGLKATFITDYVHGVVLfvIIITFALTAYATSDVlGSPSAVYDLLVEAARRHpVEGNQD 243
                 44444457799********************************************98333445556666666662577777788888888778898999 PP

         SSF 193 dslkllrdpltalslwlglv..lGvagl.philvRflaakdakailkgvlkltivlilvligmisiilfaiklagavp......kavgtevgvsniayp 282
                 +s+ ++r+   a+ + + +v  +G++ l      + +aa  ++a+   ++ ++ ++++  + + +++l a +l    p      + ++++   + +a+p
  CCE30869.1 244 GSYLTMRSSGGAIFFVINIVgnFGTVFLdNGYYNKAIAAHPVHALPGYIMGGLAWFAIPWLTATTLGLSALALESS-PrfptfpERMTEAEVSAGLALP 341
                 9998999887777664444333666666666788999999999998888889999999999999999988887654.334455588888888999**** PP

         SSF 283 eLvvkllpnllaGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkg.vlklvelafaglasa 380
                   +v+ll+++ a+  l  ++ a+ s  +s l+++ss+ft D+Y   +  a a  k+l++ s + ++  + +  ++ +    +g  + +  l +++l sa
  CCE30869.1 342 YAAVALLGKGGAAATLVLIFMAVTSAFNSELVATSSIFTYDIYRTYINPA-AGGKRLIYTSHVCMVAYSTVICCISIGLWYNGiSMGYLYLLMGVLISA 439
                 *************************************************9.9999********9999999999998888888866899*********** PP

         SSF 381 vlavillalfwkrvneqGAlagliiG 406
                  +    l+l w+  n+  A+ + i+G
  CCE30869.1 440 AVIPATLTLLWNGQNRWAAILSPILG 465
                 ****************9999998887 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 0.84
         SSF 334 akekelvgvsriivlvvislaillav 359
                 +++++l ++ +i+ ++ is+a+ l+v
  CCE30869.1 562 DEQRKLNKAFKIACIITISMALSLLV 587
                 56788888899999999998887665 PP

>> DUF1676  Protein of unknown function (DUF1676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.2e-06     0.037      87     167 ..     548     616 ..     528     620 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.2e-06
     DUF1676  87 lpeeldaegaeesisrsleedne..egRkkkkkkkklkkmllplllalklklklLlplalgllallagKALllgklaLllsai 167
                  ++e       e++s+++    +  e R k    +k+ k+  ++ + ++l l +L+p++l + + +  K++++g +a  ++ i
  CCE30869.1 548 AQRE------VERTSQQN----FedEQR-KL---NKAFKIACIITISMALSLLVLWPMPLYGSGYIFSKKFFTGWVAVGIAWI 616
                 2222......22222222....224999.55...888999999999999****************************999877 PP

>> S19  Chorion protein S19 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.4e-05      0.44      20      43 ..     440     463 ..     435     471 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.4e-05
         S19  20 tvqPaGatllyPGqnnyrayvsPp 43 
                 +v Pa  tll+ Gqn + a+ sP 
  CCE30869.1 440 AVIPATLTLLWNGQNRWAAILSPI 463
                 689*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4925.56
//
Query:       CCE30870.1  [L=539]
Description: probable acetylglutamate kinase/N-acetyl-gamma-glutamyl-phosphate reductase precursor (ARG-6) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-44  150.0   0.0    8.4e-44  149.2   0.0    1.4  1  NAT        NAT, N-acetyltransferase, of N-acetylglutamate syn
    2.8e-30  105.7   0.0    4.4e-30  105.0   0.0    1.3  1  AA_kinase  Amino acid kinase family


Domain annotation for each model (and alignments):
>> NAT  NAT, N-acetyltransferase, of N-acetylglutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.2   0.0   9.4e-48   8.4e-44       1     154 [.     320     474 ..     320     491 .. 0.96

  Alignments for each domain:
  == domain 1  score: 149.2 bits;  conditional E-value: 9.4e-48
                 GHHHHHHSSSTSSEEEE---XEEEESSCCCSSXCCHHHHHHTTST...TTSSXHHHHHHHHHTSXEEEEEETTXSEEEEE.....EXSSSSXEEEEEEE CS
         NAT   1 dlqkelftdsgagtlirrGlkvitvkslkelidlekLksliedsf...krkldvkdYldrlkgkiakiyiaedyeglAivtwedpkeekevayLdkFav 96 
                 dlqkelftdsgagt+irrG k+ +v+s +e++dle Lk+ + +++   +++ +v++Y+d lk++++ +y ++ +++lAiv+   p++++++ +L ++++
  CCE30870.1 320 DLQKELFTDSGAGTMIRRGDKIRKVTSVDEFEDLEMLKTTLIRDReglDAEATVDRYIDFLKENPFAAYYDDTMQCLAIVMP--PNQDRTMGTLATLTI 416
                 79*************************************99999989999******************************88..999************ PP

                 XHHHHHTTHHHHHHHHHHHHXSSEEEEEETTXTTHHHHHHCXSEEEEETTEEEEEESX CS
         NAT  97 lkssqgsgvsdvvfkalkkdfpkLvWrsrednpvnkWyfersdGslkksqwvlfWyGl 154
                 +k +++++v+++vf+a+kkd p+L W+++e++++++W+fe++dGs+++++ vlf+yG+
  CCE30870.1 417 TKPGWLTNVAENVFAAVKKDNPRLAWTVSESDENLTWFFEKADGSFNQNGNVLFYYGC 474
                 *********************************************************4 PP

>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.0   4.9e-34   4.4e-30       2     226 ..      88     300 ..      87     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 4.9e-34
                 EEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHGE CS
   AA_kinase   2 rvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglpa 100
                   V+K+GG++lt  +   +++l++ +  l e g  +v+VhG+g++ ++ll++ +g+++++++ g+r+t+++++ +a+ ++ +  + rl+++l a g+++
  CCE30870.1  88 FAVIKVGGAILT--DH--INELCRSLLFLYELGLYPVIVHGAGPQLNRLLEE-AGVEPQFEE-GIRVTDAKTLGIAR-RLFLEENMRLTDHLDALGVAT 179
                 68**********..44..99********************************.*********.***********999.9******************** PP

                 EEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTTCEC CS
   AA_kinase 101 vglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpdarll 199
                 +++s+  +    ++ + +++g++++v+++ ie+++eag++p+lt ++  + +g l+++++D++aa lA al++ k+++l++  G++d ++ k+     +
  CCE30870.1 180 RSISGVFTADYLNKEKWQYVGKITKVNKAGIEKSIEAGYIPILTSMA-ESMDGRLLNVNADVAAAELARALEPLKVVYLSEKGGLFDGEGEKI---SHI 274
                 ****9988766655599****************************97.88888999********************************99666...555 PP

                 CEE.EHHHCHHCSSS.TTTHHHHCHHHH CS
   AA_kinase 200 pei.svdeaeesaselatgGmkvkhpaa 226
                 +   ++d++++  + + ++G++ k+++ 
  CCE30870.1 275 NLDaEFDSLMS--QSWCRYGTRLKIKEI 300
                 54445555555..888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3675.99
//
Query:       CCE30871.1  [L=311]
Description: uncharacterized protein CPUR_04721 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-30  106.2   0.4    9.1e-18   64.8   0.0    2.2  2  DUF3328      Domain of unknown function (DUF3328)
  ------ inclusion threshold ------
       0.12   11.6   0.2       0.17   11.0   0.2    1.1  1  Herpes_LMP1  Herpesvirus latent membrane protein 1 (LMP1)


Domain annotation for each model (and alignments):
>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0     1e-21   9.1e-18       6     138 ..      48     192 ..      41     194 .. 0.74
   2 !   39.9   0.2   4.4e-14     4e-10     176     220 .]     194     238 ..     193     238 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 1e-21
     DUF3328   6 rssawrrllllvlllllllllllilssllsssekkaak........kkspsspspaldaieyelkqfk...lgskeapsiyrgepspevdaaWddllkl 93 
                 r + +  +  + ++ll+l ll++ +  l++++++++a         +k++ ++sp+ d++ ++ + ++      +  +siyr+ ps+evd aWd + + 
  CCE30871.1  48 RPPVLLAS--IAFTLLNLALLFVSIILLFWTQNQRRALlrnesnslLKAVDAYSPVYDQVHVPFVDLTingSLLDRGESIYRQAPSAEVDTAWDLITNQ 144
                 33333333..233333333333333333344433333355678999***********************888888999********************* PP

     DUF3328  94 eailipreelrrlgkdpaaelevedkseg...gyiaglevfHqLHCLn 138
                  + +i+++++ rlgkdp++  + + ++++   +yia+l++ H  HCLn
  CCE30871.1 145 LPHAISSQDVLRLGKDPKKTAKWPSEWGFgsdAYIAELDIVHTVHCLN 192
                 *****************555555555555667***************9 PP

  == domain 2  score: 39.9 bits;  conditional E-value: 4.4e-14
     DUF3328 176 simChaDvtlitfnwvkgtkgpvpdfntehqCrdfealldWaeen 220
                 ++mC+a+ +++t +wv+g+ +p+pdfn++++Cr++ ++ dW+ +n
  CCE30871.1 194 NLMCNANGDIVTNVWVEGQLHPFPDFNVNKKCRNYGTFIDWQGKN 238
                 79***************************************9986 PP

>> Herpes_LMP1  Herpesvirus latent membrane protein 1 (LMP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   1.9e-05      0.17      11      48 ..      41      76 ..      31      94 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Herpes_LMP1 11 gprrpprgpplssslglallllllallfwlyivmsdwt 48
                  p+rppr pp+  +  +a+ ll lallf   i++  wt
   CCE30871.1 41 TPKRPPRRPPVLLA-SIAFTLLNLALLFVS-IILLFWT 76
                 79******997532.456666677777654.4444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2418.81
//
Query:       CCE30872.1  [L=134]
Description: uncharacterized protein CPUR_04722 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1101.21
//
Query:       CCE30873.1  [L=319]
Description: uncharacterized protein CPUR_04723 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-47  161.0   0.4    4.6e-47  160.6   0.4    1.1  1  DUF3328   Domain of unknown function (DUF3328)


Domain annotation for each model (and alignments):
>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.4   2.6e-51   4.6e-47       7     219 ..      45     274 ..      40     275 .. 0.85

  Alignments for each domain:
  == domain 1  score: 160.6 bits;  conditional E-value: 2.6e-51
     DUF3328   7 ssawrrllllvlllllllllllilssllsssekkaak..........kkspsspspaldaieyelkqfk...lgskeapsiyrgepspevdaaWddllk 92 
                  ++    ll++++++ll+l+ll++s +l  + +++++          +k++ ++sp+ d++ ++  +++      +  +siyr+ ps+evdaaWd + +
  CCE30873.1  45 PPRRPPVLLASIAFTLLNLALLFVSIILLFCTRNQRRallrnesnslLKAVDAYSPVYDQVHVPFIELTingSLLDRGESIYRQAPSAEVDAAWDLITH 143
                 444444567777777777777777777777777777777888889************************9888888999******************** PP

     DUF3328  93 leailipreelrrlgkdp...aaelevedkseggyiaglevfHqLHCLnllrkalypeyygypglsegeeee.drvHleHCidiLrqsimChaDvtlit 187
                   + +i+++++ rlgkdp   a+++++     ++yia+l++ H  HCLn +r+ ++ ++y   ++ +g++ e +r H++HCi i++q++mC+a+ +++t
  CCE30873.1 144 QLPHAISSQDVLRLGKDPkrtAKWPSEWVFGSDAYIAELDIVHTVHCLNAVRRDVHWQHYFGDRYPDGKFPElHRTHTDHCIYIILQNLMCNANGDIVT 242
                 ******************665555555555555***************************333444444444699************************ PP

     DUF3328 188 fnwvkgtkgpvpdfntehqCrdfealldWaee 219
                  +wv+g+ +p+pdfn++++Cr+++++ dW ++
  CCE30873.1 243 NVWVEGQLHPFPDFNVNKKCRNYDTFIDWHRK 274
                 *****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2716.15
//
Query:       CCE30874.1  [L=229]
Description: uncharacterized protein CPUR_04724 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1941.12
//
Query:       CCE30875.1  [L=342]
Description: related to LIP2-lipoic acid ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-06   27.3   0.0    4.9e-06   26.5   0.0    1.3  1  BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.7e-10   4.9e-06      17     130 ..     156     268 ..     142     268 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 2.7e-10
                    CGGG--TT-EEEEEEESS-B-B--B-TTSEEEEEEEEESS...-CCGTHHHHHHHHHHHHHHH...........HHTT-TTEEEE.TTTEEEETTE CS
  BPL_LplA_LipB  17 nsselesgglvvvrrqtgGrnvwhspkgeltyslllspeqktfqnrvlelyvsllvlavlealg..y.rd..skpgiegipvfik.wpnDlyvngr 106
                    + +  +s  ++v r+++gG  ++h+p++ ++  +l++ +   +++  ++ y + l+  + + l   + ++   ++ ++g++v+ik +        r
     CCE30875.1 156 STQFAQSFIPQVRRTNRGGLTTYHGPGQLVLWPVLDMHS-CLYPKYGVASYAHHLETTTQRFLSenFgIEtyIARDEPGVWVSIKtG------RPR 244
                    44556667789999***********************88.5999999999999999999999976524224589*********9944......68* PP

                    EEEEEEEEEEETTS-EEEEEEEEE CS
  BPL_LplA_LipB 107 KlaGiavtstrgktlhhivigvgv 130
                    K+a+ +v+ +r +t+ +i+i++++
     CCE30875.1 245 KIAALGVHHRRYVTALGIAINLDI 268
                    *********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2951.23
//
Query:       CCE30876.1  [L=277]
Description: uncharacterized protein CPUR_04726 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-35  121.0   6.8    6.9e-35  120.6   6.8    1.1  1  SUR7             SUR7/PalI family
    7.3e-06   25.6   2.5    1.3e-05   24.8   2.5    1.3  1  Clc-like         Clc-like
  ------ inclusion threshold ------
      0.022   14.6   8.6      0.039   13.8   8.6    1.4  1  Amastin          Amastin surface glycoprotein
       0.44   10.3  11.1      0.032   14.0   5.7    1.8  2  Claudin_2        PMP-22/EMP/MP20/Claudin tight junction


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   6.8   1.5e-38   6.9e-35       5     211 ..      11     204 ..       8     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 120.6 bits;  conditional E-value: 1.5e-38
        SUR7   5 llflslaalilllfailgsiknstpltsiylskfdlsgldlaqigladvysfgvwgyCdnsdvnytkCskpkagypfdpleelnsesngkvd.lPsnlr 102
                  l++++a++++l+f++l+++++stpl+++y++++++ g+++a    +++++++++ +C    +n+ +Cs +ka+ pf     ++s+ ++    l ++  
  CCE30876.1  11 GLITLAASMLFLFFIVLSGVSDSTPLNKTYFLRANTGGITGA----REFSQWTYFYIC---GDNNLDCSGAKAAIPFG--WAWDSGAQNVPEgLGGSHG 100
                 58999*************************************....************...*****************..7777777754445333333 PP

        SUR7 103 k..tlsklnnltkalfilhiialvlsfislvvgllaicvspdnsrllsflnlllsvlsflatllaalldtllfvfvrkkinlkefgikaslglkflafa 199
                 +  t sk+ ++++++++++ii+l++ +++++ g+la+c      rl+  + ++++ +++++ ++a  l t++fv++r+ +  ++ g++aslg   ++ +
  CCE30876.1 101 NgtTSSKYFYMWRFSWVFIIITLFFEMLAFFSGFLACC-----GRLGAAISFMIAGFALILHTIATSLFTAVFVKARNRF--RDDGREASLGSYGFGWM 192
                 31144559******************************.....9*9**********************************..***************** PP

        SUR7 200 Wlalaaallvvi 211
                 W ++aa+l+++i
  CCE30876.1 193 WGSWAALLVATI 204
                 ********9988 PP

>> Clc-like  Clc-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   2.5   2.8e-09   1.3e-05      92     170 ..     101     178 ..      87     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.8e-09
    Clc-like  92 vgelethkFygWhkavlilllislllaalsllsgicasvssseailftillvlaallalvadiiFfvaaervdsrflkg 170
                  g    ++Fy W+ +  ++++i+l++ +l+ +sg+ a++ +  a +  ++  +a +l ++a  +F     ++ +rf   
  CCE30876.1 101 NGTTSSKYFYMWRFSW-VFIIITLFFEMLAFFSGFLACCGRLGAAISFMIAGFALILHTIATSLFTAVFVKARNRFRDD 178
                 56778899****8665.677899******************9998888999**************99999999999754 PP

>> Amastin  Amastin surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   8.6   8.6e-06     0.039      62     155 .]     112     206 ..     103     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.6e-06
     Amastin  62 fraaqafsiisilvlaaalllsvllllccsslkwvclllnivsvvtllivwalmvavyykrfCd.alksttakyga.GFgLlvvawlldlinivvL 155
                 +r   +f ii++++ ++a+++++l++++ +    + ++++ +++++ +i + l +av+ k +   +   ++a +g+ GFg +  +w + l++++++
  CCE30876.1 112 WRFSWVFIIITLFFEMLAFFSGFLACCG-RLGAAISFMIAGFALILHTIATSLFTAVFVKARNRfRDDGREASLGSyGFGWMWGSWAALLVATILF 206
                 677889**********************.99999999999******************9666643555566677766***********99999876 PP

>> Claudin_2  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.36   1.6e+03     127     138 ..      12      23 ..       5      52 .. 0.62
   2 ?   14.0   5.7     7e-06     0.032      84     191 ..     107     206 ..      61     208 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.36
   Claudin_2 127 ilfllagvlgll 138
                  ++l+a++l+l 
  CCE30876.1  12 LITLAASMLFLF 23 
                 333444443333 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 7e-06
   Claudin_2  84 sllalarfvqvlliLslvlivlavvlgllallkqsv..lllkaagilfllagvlgllavvvfiesvkkvfeesfqqwmqelqnnvrisfgWSfalAvag 180
                     + rf  v++i+ l++ +la++ g+la+  +    + ++ ag+ ++l  + + l ++vf++  ++ f    ++   e +   ++ fgW     + +
  CCE30876.1 107 KYFYMWRFSWVFIIITLFFEMLAFFSGFLACCGRLGaaISFMIAGFALILHTIATSLFTAVFVKARNR-F----RDDGREASLG-SYGFGW----MWGS 195
                 44455677778********************9887655888999999999999999999999988843.3....3344444555.445555....4777 PP

   Claudin_2 181 vvlsllAglLf 191
                  +++l+A +Lf
  CCE30876.1 196 WAALLVATILF 206
                 77788888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1898.11
//
Query:       CCE30877.1  [L=643]
Description: related to tyrosine protein kinase of the MAP kinase kinase family [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-56  190.3   0.0    3.1e-53  180.8   0.0    2.2  2  Pkinase         Protein kinase domain
    6.4e-32  110.9   0.0    1.7e-30  106.2   0.0    2.1  2  Pkinase_Tyr     Protein tyrosine kinase
    0.00043   19.3   0.0    0.00062   18.8   0.0    1.2  1  Haspin_kinase   Haspin like kinase domain
    0.00066   19.1   0.0      0.001   18.5   0.0    1.1  1  Kinase-like     Kinase-like
     0.0028   16.8   0.1     0.0045   16.1   0.1    1.2  1  Seadorna_VP7    Seadornavirus VP7
  ------ inclusion threshold ------
      0.011   14.6   0.0      0.016   14.0   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
       0.13   12.1   0.1       0.91    9.4   0.0    2.3  3  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0011       2.9       3      22 ..     264     283 ..     262     286 .. 0.86
   2 !  180.8   0.0   1.2e-56   3.1e-53      22     264 .]     325     566 ..     322     566 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0011
                 EEEEEEEESSEEEEEEEETT CS
     Pkinase   3 kleklGeGsfGkVykaveke 22 
                  + +lG+G++G+Vyk+++++
  CCE30877.1 264 IQGELGKGNYGTVYKVRHAK 283
                 5679************9975 PP

  == domain 2  score: 180.8 bits;  conditional E-value: 1.2e-56
                 TTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHH.HTTE CS
     Pkinase  22 etgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleylH.skgi 119
                 +tgk++A+K+i+ e ++ k  +++l+E+ il+++ +p+i+ +y++f+++  +y++ ey++gg++++l+     ++e+ ++ki++++++gl+ l  +++i
  CCE30877.1 325 TTGKMMAMKEIRLELDDAKF-TTILKELVILHECVSPHIIDFYGAFYQEGAVYMCIEYMDGGSIDKLYA--DGIPEHILRKITYSTVKGLKSLKdEHNI 420
                 689***********999988.59*********************************************8..58********************97788* PP

                 E-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..........TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHH CS
     Pkinase 120 iHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl..........keneyskkvDvWslGvilyelltgkppfsgekgkekvek 208
                 iHrD+Kp NiL++++g++Ki+DFG++ +l  s  +++ +g + Y+APE +          ++  ys ++D+WslG++++e  +g+ p++ e +    ++
  CCE30877.1 421 IHRDVKPTNILVNSRGQVKICDFGVSGNLVASI-AKTNIGCQSYMAPERIsgggmsapgsSDGTYSVQSDIWSLGLTIIECAMGRYPYPPEVS----ST 514
                 *******************************99.****************999998888666899************************3333....34 PP

                 HHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 209 eldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++ q   +  i++  +      + +se+a+d+++++l+k pk R t ++ll+hp+l
  CCE30877.1 515 IFSQ---LSAIVE-GDPPDLPTEGFSETAQDFVSSCLHKIPKMRATYAMLLNHPWL 566
                 6666...334443.35566667889******************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.028        73       2      21 ..     263     282 ..     262     291 .. 0.83
   2 !  106.2   0.0   6.6e-34   1.7e-30      27     256 ..     326     561 ..     305     563 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.028
                  EEEEEEEEESSEEEEEEEEE CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlk 21 
                  +++ +lG+G++G+V++ +  
   CCE30877.1 263 QIQGELGKGNYGTVYKVRHA 282
                  67889**********97755 PP

  == domain 2  score: 106.2 bits;  conditional E-value: 6.6e-34
                  SEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHH.TT CS
  Pkinase_Tyr  27 kevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLes.kk 123
                  +    a+K ++ e ++ + + +l+e+ i++++  p+i+ ++g+ ++e+ +++ +ey++gG+++k   +     +  + l ++++   kG++ L++ ++
   CCE30877.1 326 TGKMMAMKEIRLELDDAKFTTILKELVILHECVSPHIIDFYGAFYQEGAVYMCIEYMDGGSIDKLYADG----IPEHILRKITYSTVKGLKSLKDeHN 419
                  5567899****9**************************************************9977665....9999999*************97256 PP

                  EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..........EEHHHHHHHHHHHHHHHHTTSSGTTTTSHH CS
  Pkinase_Tyr 124 lvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..........ftsksDvWsfGvllwEiftlgespypglkn 211
                  ++Hrd+   N+L++++ +vki+DfG++ ++      + ++++  +  +mapE ++ +           ++++sD+Ws G +++E +  g+ pyp   +
   CCE30877.1 420 IIHRDVKPTNILVNSRGQVKICDFGVSGNL----VASIAKTNIGCQSYMAPERISGGGmsapgssdgtYSVQSDIWSLGLTIIECAM-GRYPYPPEVS 512
                  *****************************9....556667778899********99888899999999****************887.*****99888 PP

                  HHHHHHH...HTTEES-BBT.TSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 212 eevlekl...kegkrlekpe.kcpeelyelmkkcweedpeeRptfselv 256
                  ++++++l    eg   + p+   +e+ ++++++c+++ p+ R+t++ l+
   CCE30877.1 513 STIFSQLsaiVEGDPPDLPTeGFSETAQDFVSSCLHKIPKMRATYAMLL 561
                  88777662225566666554156778899***************98876 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.4e-07   0.00062     176     254 ..     367     446 ..     324     457 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.4e-07
  Haspin_kinase 176 pdfyseqqlflvlllkdkGtdLeevklksw..kqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlkls 254
                      fy+e+ +++ ++  d+G +++++    +  +   +i +++vk L+    + +  HRd +  niLv++ ++v ++d+ +s
     CCE30877.1 367 GAFYQEGAVYMCIEYMDGG-SIDKLYADGIpeHILRKITYSTVKGLKSLKDEHNIIHRDVKPTNILVNSRGQVKICDFGVS 446
                    5677777777777766655.56776554441045679****************************************9876 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.9e-07     0.001     155     244 ..     409     501 ..     395     519 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.9e-07
  Kinase-like 155 rlaanLqa.kglvhgkftvdnllldekgglmlggft...aLvragtkvvlsevekgfaPpEllgsrgg.ytrknktkmthkldaWqlGlviyriw 244
                  +   +L++ + ++h +++++n+l + +g++++ +f+   +Lv   +k   +  ++++  pE ++  g         +++ + d W lGl+i   +
   CCE30877.1 409 KGLKSLKDeHNIIHRDVKPTNILVNSRGQVKICDFGvsgNLVASIAKT--NIGCQSYMAPERISGGGMsAPGSSDGTYSVQSDIWSLGLTIIECA 501
                  55556655157************************8222455444444..466799999998887665455568899**************8765 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.7e-06    0.0045     147     188 ..     407     444 ..     397     462 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.7e-06
  Seadorna_VP7 147 ivaglkdLmdfhsestnllhGDcnpenlmcDknGylklvDPv 188
                    v glk+L+d h    n++h D++p n++ ++ G++k+ D +
    CCE30877.1 407 TVKGLKSLKDEH----NIIHRDVKPTNILVNSRGQVKICDFG 444
                   578999999999....9*********************9954 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.4e-06     0.016     313     349 ..     405     436 ..     371     475 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.4e-06
  Pkinase_fungal 313 rDaIkghrsLflkagiLHrDiSenNilitdskkeger 349
                     +  +kg++sL  + +i+HrD+   Nil++      + 
      CCE30877.1 405 YSTVKGLKSLKDEHNIIHRDVKPTNILVNS-----RG 436
                     5689***********************993.....33 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.2   5.6e+03      91     114 ..      89     112 ..      77     120 .. 0.80
   2 ?   -0.9   0.0      0.49   1.3e+03      37      88 ..     344     392 ..     324     418 .. 0.73
   3 ?    9.4   0.0   0.00035      0.91     164     194 ..     416     444 ..     395     448 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHCCHHCH.-STTT CS
         APH  91 lpellealgeflaalhqvdpaalp 114
                 +++++ ++ +  +alhq+++ ++p
  CCE30877.1  89 AGAMGNDVMARARALHQARMGKSP 112
                 678888999999999999877666 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.49
                 HHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHH CS
         APH  37 irrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsa 88 
                 +  ++++l  L++  v  P ++++    +++g ++  iey++g s++  l+a
  CCE30877.1 344 FTTILKELVILHEC-V-SPHIIDFYGAFYQEGAVYMCIEYMDGGSIDK-LYA 392
                 44445555555555.3.6888888889999999999999999999988.444 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00035
                 S-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 164 lptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 +++ ++H+D +p N+lv+++ g+v  + Df+
  CCE30877.1 416 DEHNIIHRDVKPTNILVNSR-GQV-KICDFG 444
                 57789*************55.555.377776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 4965.12
//
Query:       CCE30878.1  [L=36]
Description: uncharacterized protein CPUR_04729 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      150  (0.00836633); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 277.87
//
Query:       CCE30879.1  [L=445]
Description: related to protein kinase C pathway protein SMP3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-62  210.3  20.6    6.9e-62  210.0  20.6    1.0  1  Glyco_transf_22  Alg9-like mannosyltransferase family


Domain annotation for each model (and alignments):
>> Glyco_transf_22  Alg9-like mannosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.0  20.6   3.8e-66   6.9e-62       2     413 ..       5     396 ..       4     398 .. 0.85

  Alignments for each domain:
  == domain 1  score: 210.0 bits;  conditional E-value: 3.8e-66
  Glyco_transf_22   2 ifllllalrlllalltqtsfdpDEffqslEva.hklvfgkgtltWEyspkygiRSylfllllalpyrllael.v.......adskiavlyapRl 86 
                      ++lll+ +rl++al ++++ +pDE fq  Ev+ ++++     +tWE++++ +iRS+++l  ++ ++ ll ++ +       + + iav++ +R+
       CCE30879.1   5 TYLLLVLIRLWFALSPSYI-HPDENFQGPEVIaGQIFSYPVRRTWEFTSEHPIRSVFPLWPVYGLPMLLLRWlWggnghdgEITPIAVFWTLRV 97 
                      7999************888.************899999999******************99987776666652433322224677888****** PP

  Glyco_transf_22  87 llallsalidyylfravcrkygseiakialllslsswglfvfstrtfsnslemlltsialyllsellsrenksssnekylvavlliavlavliR 180
                      l+ l+s++++      + ++  ++ + +a+++  ss+++++++t+tfsns+e+l++ + l l+++++ + + ss+   ++ ++ ++a ++v++R
       CCE30879.1  98 LMFLISFVLEDWALHELIASP-RH-RSVAVVMVASSYVTWTYQTHTFSNSVETLVVAWSLVLIQRIVDTRQRSSI--LSSAVLGIVATFGVFNR 187
                      *******98765555455542.33.6899************************************8877777777..48889999********* PP

  Glyco_transf_22 181 ptsallwlplvlflllrlvkkrsktflfliialvllvlllvlvlviliDslfY...........gkfvftplnflkyNvlsnlsslyGvhPwyf 263
                       t+ +++l++ ++l+ ++ +k s+++       + +++l+++++ i +D+ fY            + ++tplnf+ yN ++++ +++G hPwy 
       CCE30879.1 188 TTFPAFLLIPGFRLIPHFLQKPSSLV------ALASAALITTIIAISLDTAFYssapvtwadllWRPTITPLNFFLYNSNTANLAQHGIHPWYQ 275
                      ***************88888866666......34455666666789************************************************ PP

  Glyco_transf_22 264 YllqnlpnilgvlllavllgllvllsrkvsrlllllltilltLlvysllpHKElRFllpvlPlillsaavlltrlsresakvskklsllvllll 357
                      +l +nlp++lg+ +l+++  +  +         l l+  +  L+v+s++pH+E RFllp +Plil s ++  +++     + +   + +  ++l
       CCE30879.1 276 HLAVNLPQLLGPAALLLFTKPHLS---------LRLYSAISGLVVLSIFPHQEARFLLPTVPLILSSVGLPRNKM-----LLR---AWVGAWIL 352
                      ************999998777777.........45788899***********************99988555555.....333...34889*** PP

  Glyco_transf_22 358 fnvvlalllglvhqagvillvevmseleetkrknrkekketssvyvlkecyrtPss 413
                      fn+++ ll+g++hq gvi   +   ++++++ + +          +++++y+ P +
       CCE30879.1 353 FNLLFGLLMGIYHQGGVI---PGQVFISKQPDATQ---------VIWWKTYTPPIW 396
                      ******************...88888888884433.........468889988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3181.00
//
Query:       CCE30880.1  [L=217]
Description: probable ribosomal protein L10a.e, cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-44  150.8   0.1    4.5e-44  150.6   0.1    1.0  1  Ribosomal_L1  Ribosomal protein L1p/L10e family


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.1   2.5e-48   4.5e-44       4     204 .]      23     212 ..      16     212 .. 0.95

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 2.5e-48
                   HS-SSS--EEEEEEEESSS-TTSGGG--EEEEE-STSTSSCS-EEEEE-HHHHH...HHHHTT..-SEEETCHHHHHHT-HHHHHHTCCH-SEEEEE CS
  Ribosomal_L1   4 hakkkfdesveialnlttkkpkkadqrkpgkipLphplgkevkiclitkdpqaeyakeakeagriakviglkklkkkyksfeakrkllkefdlflad 100
                   ++k++f e+ve+++ l++++p++ d+r++g+i+Lp   + ++ ic++ ++++ +    ak+ g   + ++ ++lkk  k+++  +kl+ ++d f+a+
    CCE30880.1  23 TKKRNFLETVELQIGLKNYDPQR-DKRFSGTIKLPSIPRPNMAICILGDQHDLD---RAKHGG--VDAMSADDLKKLNKNKKLIKKLARKYDAFVAS 113
                   348899**************666.99***********************99999...99*99*..******************************** PP

                   GGGHHHHHHHCHHHHGGGT-S-ECC..CT.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTSTTTSGSEEEEE CS
  Ribosomal_L1 101 drimpllpklLGkvfgkrkkmPipvltkgtvkedvkkevekalkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvekvpkkwkniksiy 197
                   +++++++p+lLG+ ++k++k+P+pv ++    +d++ +++++++ t++++l+k  c+ v+vG++++++e l+ Ni+ ++++lv+ ++k+w+n+ s++
    CCE30880.1 114 EALIKQIPRLLGPGLSKAGKFPTPV-SH---ADDLTGKINEVKS-TIKFQLKKVLCMGVAVGNVGMEQEALIGNIMLAINYLVSLLKKGWQNVGSLT 205
                   *************************.43...68***********.**************************************************** PP

                   EEETTS- CS
  Ribosomal_L1 198 lkttmsp 204
                   +k +msp
    CCE30880.1 206 IKASMSP 212
                   ******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1680.66
//
Query:       CCE30881.1  [L=1583]
Description: uncharacterized protein CPUR_04732 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-64  217.2   0.1    5.5e-64  216.1   0.1    1.6  1  DUF2428    Putative death-receptor fusion protein (DUF2428)
      1e-06   28.5   9.5       0.47   10.9   0.1    6.4  6  HEAT       HEAT repeat
      5e-06   26.8   8.1        1.5    9.3   1.1    6.8  7  HEAT_2     HEAT repeats
  ------ inclusion threshold ------
      0.011   16.1   0.9      0.042   14.2   0.2    2.6  2  PSD5       Protein of unknown function (DUF1595)
       0.21   11.9   0.0       0.41   10.9   0.0    1.5  1  GyrI-like  GyrI-like small molecule binding domain
       0.28   11.7  11.4       0.77   10.3   0.3    4.9  5  HEAT_EZ    HEAT-like repeat


Domain annotation for each model (and alignments):
>> DUF2428  Putative death-receptor fusion protein (DUF2428)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.1   0.1   1.8e-67   5.5e-64       3     275 .]     678     917 ..     676     917 .. 0.90

  Alignments for each domain:
  == domain 1  score: 216.1 bits;  conditional E-value: 1.8e-67
     DUF2428   3 verllelcerisevvlpvvsssspegllpedldseeesaeeeeeeeeeeeeekkekeekkkvtaqvvlvccWrsmKevslllgtllqklplqtekessd 101
                 + +++++cer++++v+++++++speg+lp++l++ +                         ++++ +l++++r+++e+s+l+++++  l+++++ +++ 
  CCE30881.1 678 QLDIVSCCERAWRAVRDILCDDSPEGHLPQELEEVD------------------------GLDTKDLLSYSFRAVHESSNLMRAMI--LTITNRGREGL 750
                 5689***************************98521........................3678**********************..88888887777 PP

     DUF2428 102 ssglltveqleeigelfleqLlelrHrGAfekayvgFtklcerllrskdeelqk.lpeqwleelleeikssssklcitRRSAGlPfliqallssepkks 199
                      ++e +e+ig+l ++qL++lrHrGAf++++++F+++c+++ + + ee  + l++ w++ ++++i    s+ ++tRRSAG+P +i+++l+++  + 
  CCE30881.1 751 I--TPSKEVFERIGNLTFTQLASLRHRGAFTTVSATFATCCQQTKHLRFEETERpLLQVWYDGTMQAIY---SQGSTTRRSAGIPSMITGILAAN--A- 841
                 7..889999******************************************9999*************9...56666*****************4..4. PP

     DUF2428 200 kkklLkrtmkeLlelakkeaseeesesddesdlpqvhalNiLralfrds...rLgeevspyvadglilaiegfsspvWa 275
                  +++++++mk L+ +a+ke  ++  +++d s+lpqvha+N+L+++f++s   +Lg+++++y+  +l+la++g++s+vWa
  CCE30881.1 842 AHPTFDQAMKALMGIASKE--AR-VSETDGSNLPQVHAFNCLKDIFKNSlltSLGNQSESYLPLCLELAASGLRSEVWA 917
                 4688*************74..33.3344889*****************72225668**********************7 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.025        75       5      25 ..     337     357 ..     335     358 .. 0.84
   2 !    6.0   0.0    0.0057        17       5      26 ..     530     551 ..     528     554 .. 0.88
   3 ?   -3.2   0.0       5.3   1.6e+04       7      18 ..     909     920 ..     903     931 .. 0.75
   4 !   10.9   0.1   0.00016      0.47       8      26 ..    1020    1038 ..    1017    1042 .. 0.87
   5 ?   -2.4   0.0       2.8   8.3e+03       9      26 ..    1311    1328 ..    1309    1330 .. 0.83
   6 !    7.7   0.1    0.0016       4.8       5      23 ..    1349    1367 ..    1346    1370 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.025
                 HHHHHT-SSHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLg 25 
                 l + ls+ps +VR+ A+  L+
  CCE30881.1 337 LESVLSHPSHDVRSLALSLLV 357
                 56669***********99886 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0057
                 HHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLga 26 
                 l  l++Dp  +VR+++a aL++
  CCE30881.1 530 LFDLIMDPFEDVRDMSATALAK 551
                 77889**************986 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.3
                 HHHT-SSHHHHH CS
        HEAT   7 kllsDpspeVRe 18 
                 + l+++ + +R 
  CCE30881.1 909 SGLRSEVWAIRN 920
                 678999999996 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00016
                  HHT-SSHHHHHHHHHHHHH CS
        HEAT    8 llsDpspeVReaAakaLga 26  
                   ls+p ++VR++Aa++L+ 
  CCE30881.1 1020 YLSSPVWHVRDMAARTLCS 1038
                  69**************986 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 2.8
                  HT-SSHHHHHHHHHHHHH CS
        HEAT    9 lsDpspeVReaAakaLga 26  
                  l D+  + R aA ++L  
  CCE30881.1 1311 LDDKTFDTRLAASLSLRS 1328
                  68899999****999976 PP

  == domain 6  score: 7.7 bits;  conditional E-value: 0.0016
                  HHHHHT-SSHHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAaka 23  
                  l  +l+D++ +VRe Aa+a
  CCE30881.1 1349 LYDALNDDDDQVREIAAEA 1367
                  6678*************97 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.8   5.3e+03       2      25 ..     133     156 ..     124     164 .. 0.66
   2 ?   -3.1   0.0       3.7   1.1e+04      16      39 ..     266     299 ..     263     303 .. 0.56
   3 ?    5.1   0.0      0.01        30       3      40 ..     336     378 ..     333     396 .. 0.64
   4 !    5.3   0.0    0.0087        26      31      60 ..     525     554 ..     515     561 .. 0.87
   5 ?    1.7   0.0      0.12   3.5e+02      31      55 ..    1012    1036 ..     996    1052 .. 0.74
   6 ?    1.6   0.0      0.12   3.7e+02      20      84 ..    1189    1258 ..    1184    1275 .. 0.73
   7 !    9.3   1.1   0.00049       1.5      10      55 ..    1312    1368 ..    1307    1393 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.8
      HEAT_2   2 daLlqalendpdpevrraairaLg 25 
                 ++L+++++ ++ + v++ ai++L 
  CCE30881.1 133 ETLVSIVTGHSTKPVAKSAIKTLD 156
                 556666666666666666666665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.7
      HEAT_2  16 vrraairaLgri.gnpea.........lpaLvel 39 
                  r +a++ Lgr+ +++e+         +paL++l
  CCE30881.1 266 DRSEALKFLGRMsQHQEVsgssnmdmdIPALLQL 299
                 5777777777653555554445555555555555 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.01
      HEAT_2   3 aLlqalendpdpevrraairaLg......rignpealpaLvell 40 
                 +L ++l ++p+++vr  a+  L       r  +p+a+++L + l
  CCE30881.1 336 VLESVL-SHPSHDVRSLALSLLVtspsttRPYSPKAFELLKKHL 378
                 556666.7888888888888887444432223446666666655 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0087
      HEAT_2  31 ealpaLvellededpavRraaaeaLgaigd 60 
                 +  +aL++l+ d+ ++vR + a+aL+++ +
  CCE30881.1 525 RWTRALFDLIMDPFEDVRDMSATALAKCYT 554
                 56789*********************9865 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.12
      HEAT_2   31 ealpaLvellededpavRraaaeaL 55  
                  e++  ++ +l+++ ++vR +aa++L
  CCE30881.1 1012 EIQVDVTAYLSSPVWHVRDMAARTL 1036
                  5566677889999999999999987 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.12
      HEAT_2   20 airaLg.....rignpealpaLvellededpavRraaaeaLgaigdpealpaLkellddddddvvReaAa 84  
                  a++++      ++ + +al  L  l  d+   + + aa+ L+   + ++ + L+ +  +d+dd+ ++a +
  CCE30881.1 1189 ALETISkvynpKMSSSDALSSLCMLYIDTCLGTNYSAAQVLAIENLTDVMDELLSRRSTDKDDLLQQALV 1258
                  5555553333344444666666666677777788888888888888888888888888888888887755 PP

  == domain 7  score: 9.3 bits;  conditional E-value: 0.00049
      HEAT_2   10 ndpdpevrraairaLg...........rignpealpaLvellededpavRraaaeaL 55  
                  +d+  ++r aa  +L            ++++ +al aL ++l+d+d  vR+ aaea+
  CCE30881.1 1312 DDKTFDTRLAASLSLRsffatahssplSQDHLTALLALYDALNDDDDQVREIAAEAA 1368
                  445555555555555554444333333344446677777777777777777777765 PP

>> PSD5  Protein of unknown function (DUF1595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   1.4e-05     0.042       5      54 ..    1325    1374 ..    1321    1376 .. 0.92
   2 ?   -4.7   0.0         6   1.8e+04      36      50 ..    1549    1563 ..    1543    1565 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
        PSD5    5 flerfarrAfRRplteaeverllalfdsaresgesfeegvrlalqavLvS 54  
                   l++f + A   pl+++++++llal+d+  ++ ++++e +++a q +L S
  CCE30881.1 1325 SLRSFFATAHSSPLSQDHLTALLALYDALNDDDDQVREIAAEAAQLLLLS 1374
                  58999****************************99***999999999987 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 6
        PSD5   36 sgesfeegvrlalqa 50  
                  +++++e+++ +a  a
  CCE30881.1 1549 KQDDLERAMSVARDA 1563
                  333366666665444 PP

>> GyrI-like  GyrI-like small molecule binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014      0.41      11      59 ..     767     812 ..     760     852 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
                 EEEEEEEEEEEHCCCHHHHHHHHHHHHHHHHHHCTT--SSEEEEEEEEE CS
   GyrI-like  11 frvvgirhrgdyneeggipklweelyawaseiklsnavspligvssdep 59 
                 ++++++rhrg +++   +++++++++++ ++  ++ +  pl+ v++d  
  CCE30881.1 767 TQLASLRHRGAFTT---VSATFATCCQQTKHLRFEETERPLLQVWYDGT 812
                 6789**********...*****************************964 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.4   4.2e+03      33      51 ..     337     355 ..     335     356 .. 0.84
   2 ?   -1.5   0.0       1.3   3.9e+03      33      53 ..     530     550 ..     528     551 .. 0.84
   3 ?    5.1   0.0     0.011        33      16      52 ..    1003    1036 ..     994    1036 .. 0.90
   4 ?   -1.3   0.1       1.1   3.3e+03      24      48 ..    1232    1257 ..    1218    1260 .. 0.72
   5 ?   10.3   0.3   0.00026      0.77       5      51 ..    1320    1367 ..    1317    1367 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
     HEAT_EZ  33 LlalLnddsdeVRaaAaga 51 
                 L + L+++s +VR  A+  
  CCE30881.1 337 LESVLSHPSHDVRSLALSL 355
                 788999********99866 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
     HEAT_EZ  33 LlalLnddsdeVRaaAagaLg 53 
                 L  l +d+  +VR  +a aL+
  CCE30881.1 530 LFDLIMDPFEDVRDMSATALA 550
                 5568899999*********97 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.011
     HEAT_EZ   16 ggepellqplvpeilpaLlalLnddsd..eVRaaAagaL 52  
                  +g p+ll++++++ + a l     +s+  +VR  Aa++L
  CCE30881.1 1003 AGPPDLLRDEIQVDVTAYL-----SSPvwHVRDMAARTL 1036
                  4899***************.....*************98 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.1
     HEAT_EZ   24 plvpeilpaLl.alLnddsdeVRaaA 48  
                   ++++++++Ll ++ +d++d+ ++a 
  CCE30881.1 1232 ENLTDVMDELLsRRSTDKDDLLQQAL 1257
                  57889999999777788888777664 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 0.00026
     HEAT_EZ    5 raAawaLGr..laggepellqplvpeilpaLlalLnddsdeVRaaAaga 51  
                   aA + L +  + ++ ++l q++++++l++   +Lndd+d VR+ Aa a
  CCE30881.1 1320 LAASLSLRSffATAHSSPLSQDHLTALLALY-DALNDDDDQVREIAAEA 1367
                  5555566446433445555666666555555.5*************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.44
# Mc/sec: 10760.58
//
Query:       CCE30882.1  [L=665]
Description: uncharacterized protein CPUR_04733 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-59  201.4   0.1    1.1e-57  194.9   0.0    2.3  2  DUF3074    Protein of unknown function (DUF3074)
     0.0075   15.2  16.8      0.015   14.2  16.8    1.4  1  Spc7       Spc7 kinetochore protein
  ------ inclusion threshold ------
       0.42   11.3   3.4        1.1   10.0   2.5    2.2  2  PBECR1     phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease
        4.1    7.8   7.3         15    6.0   7.0    2.1  1  E2F_CC-MB  E2F transcription factor CC-MB domain
        7.1    5.9  25.1         11    5.4  24.7    1.5  1  GBP_C      Guanylate-binding protein, C-terminal domain
        7.6    6.7  11.8         22    5.2  11.8    1.8  1  PHM7_cyt   Cytosolic domain of 10TM putative phosphate transp
        8.1    6.5  13.6         24    5.0  13.6    1.8  1  DUF4337    Domain of unknown function (DUF4337)


Domain annotation for each model (and alignments):
>> DUF3074  Protein of unknown function (DUF3074)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.9   0.0   4.5e-61   1.1e-57       1     184 []     125     344 ..     125     344 .. 0.97
   2 ?    2.2   2.0     0.059   1.5e+02      11      65 ..     557     618 ..     532     651 .. 0.62

  Alignments for each domain:
  == domain 1  score: 194.9 bits;  conditional E-value: 4.5e-61
     DUF3074   1 WfaRrSvheseggasfeefkkgLkkehaesekey.......vrsigaerrveewvevkgsgklevvelsakfpgpltpRdFvvllltasseaeeeesea 92 
                 WfaRrSvh    g+sfe++k+gL+ke+aes++ +       +r+igae+ ve+ ++v++ g+l+v++lsa+fpgp++pRdF++lllt++ +++ +++e 
  CCE30882.1 125 WFARRSVHV---GLSFEQWKTGLQKEFAESMNVQgapgsgnIRGIGAEKAVEH-RHVEDAGHLDVFHLSAQFPGPTAPRDFITLLLTSDFSHRMKADE- 218
                 ********6...9********************99999999************.89**********************************99988755. PP

     DUF3074  93 sekerefvvvslpidehpeaaerkglvrgqYeSvErirelpk....................................eseesdeeenkveWimatrSd 155
                  ++ r++++vs+p+  hpe+++r+g++rgqYeSvE+ire+p+                                    ++   + + +++eW+m+trSd
  CCE30882.1 219 -NPLRQYMIVSKPC-VHPECPPRQGIIRGQYESVEIIREIPVevedddgagatrkrslssadlpssdrhksanlgragDDAGGNPSPRAIEWLMITRSD 315
                 .479**********.99***********************************************************99777789999************ PP

     DUF3074 156 agGsiPrflqekgtpgsiakDvekfldwa 184
                 +gGs+Prfl+ekgtp  i+ D++kfldw+
  CCE30882.1 316 PGGSVPRFLIEKGTPPGIIGDAGKFLDWI 344
                 ****************************6 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.059
     DUF3074  11 eggasfeefkkgLkkehaesekeyvrsigaerrveew.......vevkgsgklevvelsakf 65 
                 +   s ++++++  ke a++e++y r+i++ ++           +++k   ++e   l+ ++
  CCE30882.1 557 KDASSLAKLREKHDKEVAKQEAKYEREIRKLEEKRAQeerkaeaRRMKVAERQEKSSLTLEL 618
                 34567788888888899999999966665532222211122222111234444444444444 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2  16.8   5.8e-06     0.015     160     289 ..     524     653 ..     518     664 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.8e-06
        Spc7 160 kqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelr.eelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervl 257
                 k+ ++l e  ++l++ +a+ +e++++++e a+e +++  ++L+e + +e+a+++a++e+  ++l+e+++q e+++e+     ++++e  + + e e+ +
  CCE30882.1 524 KDLQKLLERRQKLDRSYAQFQERMRSMREDAKEKDASSLAKLREKHdKEVAKQEAKYEREIRKLEEKRAQEERKAEARRMKVAERQEKSSLTLELEKAR 622
                 566777788899999**************999999999999977663689********99999999999999999999888899999999999999988 PP

        Spc7 258 eeckgwsesevsrlkeevkaleeltgwkivsl 289
                    +++  +e++ l+ +v +l+ +  + +v+l
  CCE30882.1 623 T-DRDVAMKEIELLRGQVGELQAQNTMLVVKL 653
                 7.89******************9999888876 PP

>> PBECR1  phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.1   1.6e+04      78      94 ..      87     103 ..      80     115 .. 0.71
   2 ?   10.0   2.5   0.00042       1.1      19      86 ..     553     620 ..     549     627 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.1
      PBECR1  78 eeykvglskgfkgkgdn 94 
                 +e  ++l+k++k+ ++n
  CCE30882.1  87 AELSAQLRKEWKEIKTN 103
                 45677899999885444 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00042
      PBECR1  19 dakkkkgfGLahilekhledfkefkekaeklinkleeiiekgkvkeeeevntielkkeeeeykvglsk 86 
                 dak+k++  La++ ekh ++ +++++k e+ i+klee  ++ + k e+++++++ ++e+++  + l+k
  CCE30882.1 553 DAKEKDASSLAKLREKHDKEVAKQEAKYEREIRKLEEKRAQEERKAEARRMKVAERQEKSSLTLELEK 620
                 67899999*************9999****************999999999999999999999999888 PP

>> E2F_CC-MB  E2F transcription factor CC-MB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.0    0.0059        15       3      38 ..     524     559 ..     522     606 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0059
   E2F_CC-MB   3 qelesleeeeqkLDelieklteqlknltedeknqla 38 
                 ++l++l e+ qkLD+  ++++e+++++ ed+k++ a
  CCE30882.1 524 KDLQKLLERRQKLDRSYAQFQERMRSMREDAKEKDA 559
                 799************************999998633 PP

>> GBP_C  Guanylate-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  24.7    0.0041        11     206     296 ..     545     635 ..     520     636 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0041
       GBP_C 206 ieaeqakaeaaeaekelleekqkeeeqrmeakeksleehvkqLkekleeereklleeqerllekklkeqeellkegfkeeaeslekeikel 296
                  +   ++++a e+++ +l++ ++++ ++++++e ++e ++++L+ek  +e++k ++   +++e+++k + +l  e+ ++  +   kei+ l
  CCE30882.1 545 ERMRSMREDAKEKDASSLAKLREKHDKEVAKQEAKYEREIRKLEEKRAQEERKAEARRMKVAERQEKSSLTLELEKARTDRDVAMKEIELL 635
                 445678999******************************************************************************9876 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  11.8    0.0087        22      41     125 ..     523     606 ..     518     625 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0087
    PHM7_cyt  41 vkkldklveerekavrkleaalskykkngkklpkkrpthklgflglkligkkv.daidyyrekleeldeeieeerekvkkkplgaa 125
                 +k+l+kl e+r+k+ r++ + +++ ++   + +k++  + l +l+ k   k+v  +   y++++++l+e+  +e++k++++++ +a
  CCE30882.1 523 TKDLQKLLERRQKLDRSYAQFQERMRSMR-EDAKEKDASSLAKLREK-HDKEVaKQEAKYEREIRKLEEKRAQEERKAEARRMKVA 606
                 79*******************98776654.45678888899988855.46666366789************999999999888776 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  13.6    0.0094        24      39     114 ..     539     612 ..     519     623 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0094
     DUF4337  39 qWafYQ..AksikehlaeleleqlelllkakaeelaaavdkkiakykkkiarykkekkeikkkAkeleaerdeaneas 114
                  +a +Q   +s++e+  e ++++l+ l     e+++++v+k+ aky+++i + ++++++ ++kA++   +++e +e+s
  CCE30882.1 539 SYAQFQerMRSMREDAKEKDASSLAKL----REKHDKEVAKQEAKYEREIRKLEEKRAQEERKAEARRMKVAERQEKS 612
                 577788333688999998877777766....7899999******************9999999999988888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2442  (0.136204); expected 358.6 (0.02)
Passed bias filter:                      707  (0.0394333); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 4296.84
//
Query:       CCE30883.1  [L=1403]
Description: related to Snf1p protein kinase interacting protein (SIP3 protein) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-33  116.1   1.2    4.4e-33  114.9   1.2    1.7  1  VASt      VAD1 Analog of StAR-related lipid transfer domain
    1.7e-15   57.4   0.0    4.7e-15   56.0   0.0    1.7  1  BAR_3     BAR domain of APPL family
    3.2e-06   27.6   0.1    7.9e-06   26.3   0.1    1.7  1  PH        PH domain
     0.0023   17.6   0.0      0.006   16.3   0.0    1.6  1  BAR       BAR domain
  ------ inclusion threshold ------
      0.032   14.1   0.0      0.074   12.9   0.0    1.6  1  GRAM      GRAM domain
       0.09   13.2   0.1       0.26   11.7   0.1    1.7  1  SIMPL     Protein of unknown function (DUF541)
        1.4    9.3   4.2        1.7    9.1   0.4    2.8  2  DUF4019   Protein of unknown function (DUF4019)


Domain annotation for each model (and alignments):
>> VASt  VAD1 Analog of StAR-related lipid transfer domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   1.2   1.7e-36   4.4e-33       3     152 ..     932    1076 ..     930    1078 .. 0.94

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 1.7e-36
                  EEEEESS-HHHHHHHHHSS-THHHHHHHHH.TT-BS-H.HHSE.........EEEEEEEE--SSSS.-SEEEEEEEEE..EEEEET.TEEEEEEEEE CS
        VASt    3 veevlpisvkalfellfgdkseflkkfleerqkttdisvgpweeakekgkltRklsytkplkgsig.pkqtkvtetqtilveeddl.yyivvvtttk 97  
                  +e++++ s+ka+f++lfgdks ++ k+++e+   ++i++gpw   ++ ++++R++++++++ + +g  k+++v ++q+i+v++d++ y   vvt+ k
  CCE30883.1  932 AERHFETSAKACFHVLFGDKSFVFPKLYFEH-RAQQIAQGPWVLVDQ-AQMRRDFHFKVDYVDMLGrKKSANVKDYQVIDVYSDHVtY---VVTHIK 1023
                  6899**************************8.999*******87776.*****************989******************99...****** PP

                  -T.TSTTTTSEEEEEEEEEEEETTTE..E.EEEEEEEEEESS.--TTHHHHHHHHH CS
        VASt   98 tpldvPygdsFsvetryvitwgsknskstcrltvstkvefsk.sswlkgiIekgal 152 
                  t++++P+++sF+++t++vit+++   ks+c+l+++++++++k + + k+++e++al
  CCE30883.1 1024 TAWHLPHSQSFKLVTKIVITHVA---KSKCKLAAYVRIDWTKtPALSKNLVERQAL 1076
                  *********************66...5678************7777*******997 PP

>> BAR_3  BAR domain of APPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   1.8e-18   4.7e-15       2     171 ..      23     193 ..      22     199 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 1.8e-18
       BAR_3   2 efeeclkDSPkfResleevEaeleelekklkkllKlckrlieagkaysaaqkqfaqsL.relkkeskgdeetdesLkkfsellqelenehtilldqaqr 99 
                 +++e+ +DSP fR++   + + +e +ek+l+  + + ++     + + ++ ++  ++   +    +++ ++t  +Lk+++++ +e   +    +++++ 
  CCE30883.1  23 SLNEAALDSPTFRATAVHFIDQIEAIEKWLNGYVSSTSKFAHEIQGLEDTINNYLTKTtPSAVDGFIESDYTLLALKRVGDAQRECWMQILSNVKRLDT 121
                 689*****************************99999999999999988766555555055555669999999************************** PP

       BAR_3 100 sikkpLekFrkedlkevkekkkkFdkesekleaaleknaqlskkkkeseleeadnelkatrkkfhqasldyv 171
                 s+++p+ +F+  d++++k+ ++ F++ +  ++++l+++   sk+k++s l+e +  ++++rk + qas+d++
  CCE30883.1 122 SVVEPIRNFLSGDMRNFKDIRRTFEQTQRAYDSTLARYVGQSKTKEPSALREDAFSVYENRKAYMQASMDCC 193
                 **********************************************************************87 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   3.1e-09   7.9e-06       2     102 ..     307     401 ..     306     404 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.1e-09
                 EEEEEEEEETSSSSC...SEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC..TTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHH CS
          PH   2 vkeGwLlkkgsgkkk...swkkrwfvLkdsellyykndksekdkepkgsislsncevvevva..tedpkrkfcfelriverngsrtyllqasseeerke 95 
                 +k+GwL+ +    k    +w +rw++ +d+++ +  +        p+g++  +++ v  +++  t  ++r+fcfe++++     +t  lqa+++ e+ +
  CCE30883.1 307 EKQGWLFLRVISGKPvryTWARRWYYCRDGVFGWLVPG-------PQGVLQGDEIGVLLCNTkpTVGEERRFCFEVKTK----NQTMMLQAENQKELID 394
                 699**8855544444568********************.......999999999999999988666**********999....389************* PP

                 HHHHHHH CS
          PH  96 Wikaiqs 102
                 W++ +++
  CCE30883.1 395 WLEVFEA 401
                 *998775 PP

>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.3e-06     0.006      76     197 ..      68     189 ..      42     199 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.3e-06
         BAR  76 lLaesmieagkelgedssfg........kalekygeavkklaqteeelekrvetnfldplrellekefkeiqkerkklehkrlDyDaakarlkklktkk 166
                  L ++++++ ++  +++ +g         al+ +g+a++++  +  +  kr+ t++++p+r++l +++++ +  r+  e+ + +yD++ ar+    ++k
  CCE30883.1  68 GLEDTINNYLTKTTPSAVDGfiesdytlLALKRVGDAQRECWMQILSNVKRLDTSVVEPIRNFLSGDMRNFKDIRRTFEQTQRAYDSTLARYVGQSKTK 166
                 55555555555555555555555566667999*********888888999**************************************99976544445 PP

         BAR 167 skkakdeekaeeelrkAqqkfeesneelkae 197
                 + +a          + A   +e+ +  ++a+
  CCE30883.1 167 EPSALR--------EDAFSVYENRKAYMQAS 189
                 544332........33555555555555444 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.9e-05     0.074       9      65 ..     718     784 ..     710     799 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
                 ---TT--EEEEEEEEEESS...........SEEEEEEEEESSEEEEEE-STT---EEEEEGGGEEEE CS
        GRAM   9 ellpeEkllatykCyllrdg..........gpvqGrlyltnyrlcFrskplgsskkvvlpladikri 65 
                 + lp+E+ +  ++++ + +           +  +Gr+y+t+ +++F+s   g  +   + l +i+++
  CCE30883.1 718 NALPGENPVLVFRAAWSSSSegrdvppneaLAGHGRIYVTPDNMYFYSHQMGLVTAYGMSLDTITEL 784
                 5566777777677666666566777777778889***************999988766666666665 PP

>> SIMPL  Protein of unknown function (DUF541)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1    0.0001      0.26     112     158 ..    1055    1109 ..     985    1149 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
       SIMPL  112 gvsfs......lsdedel.rdeareeAvkdArakAealAkalgvklgkv....vsise 158 
                  +v+++      ls  + l +++a+ +Av+dA++ Ae + +++  +lg+       i++
  CCE30883.1 1055 YVRIDwtktpaLS--KNLvERQALHDAVADAEEMAELATDQVR-RLGPRsrtnRAIQV 1109
                  3333311222233..3334556666677777777776666664.77743222444444 PP

>> DUF4019  Protein of unknown function (DUF4019)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.48   1.2e+03      28      48 ..     246     266 ..     214     282 .. 0.68
   2 ?    9.1   0.4   0.00067       1.7       7      60 ..    1259    1311 ..    1255    1345 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.48
     DUF4019  28 avteeewekalkavraplGav 48 
                 + +e+ ++++l+++r++lG+ 
  CCE30883.1 246 EASEAVFKAELQSARRALGES 266
                 456677888888888888876 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00067
     DUF4019    7 elvDagkyeesWeeasalfkkavteeewekalkavraplGavksRklasaeear 60  
                  +l+D+++++++Weea+a + +  ++++ +++l++ r++lG+ ++  +++++ ++
  CCE30883.1 1259 ALLDTTDMDRTWEEAGAQLSSPSSRAT-AQRLRRTRQRLGSYRHDLVVAMRVVN 1311
                  799****************99888776.999*********99876666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.86u 0.25s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 9764.03
//
Query:       CCE30884.1  [L=435]
Description: probable eukaryotic release factor 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-47  160.8   0.2    3.9e-47  159.9   0.0    1.6  2  eRF1_2          eRF1 domain 2
    7.8e-40  135.9   0.3    1.6e-39  134.9   0.3    1.6  1  eRF1_3          eRF1 domain 3
    5.5e-21   74.9   0.0    8.7e-21   74.3   0.0    1.3  1  eRF1_1          eRF1 domain 1
    3.5e-10   40.3   0.0    9.3e-10   38.9   0.0    1.7  2  baeRF_family10  Bacterial archaeo-eukaryotic release factor f
    2.5e-09   37.5   0.0    4.1e-09   36.8   0.0    1.3  1  acVLRF1         Actinobacteria/chloroflexi VLRF1 release fact
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.21   11.3   0.0    1.4  1  DUF3440         Domain of unknown function (DUF3440)


Domain annotation for each model (and alignments):
>> eRF1_2  eRF1 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   0.0   1.3e-50   3.9e-47       1     131 [.     146     276 ..     146     278 .. 0.98
   2 ?   -3.7   0.0       4.6   1.4e+04      97     117 ..     346     366 ..     338     369 .. 0.67

  Alignments for each domain:
  == domain 1  score: 159.9 bits;  conditional E-value: 1.3e-50
                 EEEEEEEETTEEEEEEEESSCEEEEEEEE------BSTTBSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTTESEEEEEESSTHHHHHHHHHHHH CS
      eRF1_2   1 kvglivldegeAtigllkgsrtevlkkievsvPkKhkrGgqsarrfeRlreekleeflkkvaeaankafllvdkdklkgiilagpgfvkeefldkdlld 99 
                 k+g+i++d+++A +g+l+g+++++++k++v++PkKh+rGgqsa rf+Rlreek++++++kvae a ++f+++dk++++gi+lag++++k+++  +d++d
  CCE30884.1 146 KFGFIIMDGNGALFGTLSGNTRDIVHKFSVDLPKKHGRGGQSALRFARLREEKRHNYVRKVAELAVQNFITNDKSNVAGIVLAGSADFKNDLNASDMFD 244
                 69************************************************************************************************* PP

                 HHHHTCCEEEEE-S-TSCHHHHHHHHCCHHHH CS
      eRF1_2 100 aelkkkviklvdvsyggesglnevlekaaevl 131
                 ++l++kvik+vdvsygge+g+n+++e ++e+l
  CCE30884.1 245 NRLQTKVIKVVDVSYGGENGFNQAIELSSETL 276
                 **************************999887 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.6
                 HHHHHHHTCCEEEEE-S-TSC CS
      eRF1_2  97 lldaelkkkviklvdvsygge 117
                 + +++++++  k +d+s+g+e
  CCE30884.1 346 FSKQQEQANRDKFLDSSTGQE 366
                 455566666667777777766 PP

>> eRF1_3  eRF1 domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.3   5.4e-43   1.6e-39       1     113 []     281     418 ..     281     418 .. 0.99

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 5.4e-43
                 HHHHHHHHHHHHHHHHCTCSSEEESHHHHHHHHHTT-EEEEEEEHCHHTSSSHHHHHS......................-HHH-HHHHHH...HHHHH CS
      eRF1_3   1 liqekklleefleelakdtgkavYGveevlkalemgAvetLLvseelersrdtlkekv......................ketgeelelve...lieel 74 
                 +iqekkl+ +++ee+++dtgk++YG++++lkale+gAvetL+v+e+le++r++lk++                       ++tg+e ++v+   ++e++
  CCE30884.1 281 FIQEKKLIGKYFEEISQDTGKVCYGIDDTLKALELGAVETLIVFENLEITRWVLKDSNgdesilhfskqqeqanrdkfldSSTGQEKDIVSqesFLEWI 379
                 69****************************************************99999*********************99********99******* PP

                 HHHHHHTT-EEEEE-TTSHHHHHHHHHTTTEEEEESS-- CS
      eRF1_3  75 venveesgakveiisseseeGeqlvkafgGiaaiLRykv 113
                 +e+++++ga +e++s++s+eG+q+vk+fgGi++iLRykv
  CCE30884.1 380 AEHYKDFGAALEFVSDRSTEGNQFVKGFGGIGGILRYKV 418
                 *************************************97 PP

>> eRF1_1  eRF1 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   2.9e-24   8.7e-21       1     128 [.      19     140 ..      19     141 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 2.9e-24
                 HEEEEE..CTBTTSCCEEEEEE-SCHHHHHHHHHCHTTHEEEEEEEECHHH.......--CEEEEEEEEEEEEEEECTT...SSEEEEEEEEEEGGGG- CS
      eRF1_1   1 mkllkr..dlekdgsgsvtLipeddedlwhlynliapgdsvrastvrkvqresstgsreservklkLtikvekvdfdkd...agvlrisGkvieenehv 94 
                 +kl+kr  +++++g+++++Li++++++++ + +++a++++++++++++v+r         ++v++++t+++++++++++   +g++ ++G++ ++++  
  CCE30884.1  19 KKLIKRleAARGNGTSMISLIIPPKDQVSRAAKMLAEEYGTASNIKSRVNR---------QSVLSAITSTQNRLKLYNKvppNGLVIYCGEILTSEG-- 106
                 799**998999**************************************99.........9******************9*****************.. PP

                 -TTSEEEEEE-TTSEEEEEECE.ESHHHHHHHHHH CS
      eRF1_1  95 klgafhtldlelkrpftiikee.wdsfalerLkea 128
                  +++++++d+e+++p++++ +  +++f++e+L e+
  CCE30884.1 107 -KERKVNIDFEPFKPINTSLYLcDNKFHTEALAEL 140
                 .9********************9*********996 PP

>> baeRF_family10  Bacterial archaeo-eukaryotic release factor family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   3.1e-13   9.3e-10       3     122 ..     134     257 ..     133     269 .. 0.89
   2 ?   -2.6   0.0       1.9   5.8e+03      59      78 ..     373     388 ..     346     396 .. 0.58

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 3.1e-13
  baeRF_family10   3 lapLlealdeyerygvvlvdreraRlfevylgeleeveevegevpgrtktggwksqdrfqrreeeqaerhlkevAellaklleerg...verlvl 94 
                     ++ L+e+l+ ++++g +++d ++a + + ++   + v++++ + p+++ +gg+ s  rf+r +ee+++ ++++vAel+++ + +++   v  +vl
      CCE30884.1 134 TEALAELLESDQKFGFIIMDGNGALFGTLSGNTRDIVHKFSVDLPKKHGRGGQ-SALRFARLREEKRHNYVRKVAELAVQNFITNDksnVAGIVL 227
                     678***********************9999999999*****************.************************99887776677****** PP

  baeRF_family10  95 gGdee..etaalldrlpkalrarvvgtlpl 122
                     +G ++  ++ +  d + ++l+ +v+  +++
      CCE30884.1 228 AGSADfkNDLNASDMFDNRLQTKVIKVVDV 257
                     **97611555667899******99987655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.9
  baeRF_family10  59 drfqrreeeqaerhlkevAe 78 
                     + f      ++ +h+k++++
      CCE30884.1 373 ESFLE----WIAEHYKDFGA 388
                     44444....44445554444 PP

>> acVLRF1  Actinobacteria/chloroflexi VLRF1 release factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.4e-12   4.1e-09       7      94 ..     151     242 ..     145     271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.4e-12
     acVLRF1   7 lvrrggfavgvveggelvaskvgtrdvqgrtaaGGwSqqRfaRrrenqadalleavaeaaarllaeesae....vvlgGdrslvaevledar 94 
                 +    g  +g+++g+++  +++++ d  +++ +GG+S  RfaR re++  + +++vae a + +  ++++    +vl+G     +++ ++  
  CCE30884.1 151 IMDGNGALFGTLSGNTRDIVHKFSVDLPKKHGRGGQSALRFARLREEKRHNYVRKVAELAVQNFITNDKSnvagIVLAGSADFKNDLNASDM 242
                 44445558999***********************************************9999996666666788*****9999888887754 PP

>> DUF3440  Domain of unknown function (DUF3440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.9e-05      0.21      31     105 ..     146     223 ..     129     259 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.9e-05
     DUF3440  31 tWgklvgrvnGvnfaaiygktkalgyr.kvklPkghtWksyvkfLLstlpeelrenylkklkv..sikfWrekGgals 105
                  +g ++   nG+ f+++ g+t+ + ++ +v lPk+h       + ++ l ee r+ny++k+      +f ++  + ++
  CCE30884.1 146 KFGFIIMDGNGALFGTLSGNTRDIVHKfSVDLPKKHGRGGQSALRFARLREEKRHNYVRKVAElaVQNFITNDKSNVA 223
                 567788888************98777669*******************************975113455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3190.49
//
Query:       CCE30885.1  [L=164]
Description: uncharacterized protein CPUR_04736 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-36  123.4   0.3    7.5e-36  123.1   0.3    1.1  1  DUF1770   Fungal protein of unknown function (DUF1770)


Domain annotation for each model (and alignments):
>> DUF1770  Fungal protein of unknown function (DUF1770)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.1   0.3   4.2e-40   7.5e-36       1      99 []      11     105 ..      11     105 .. 0.94

  Alignments for each domain:
  == domain 1  score: 123.1 bits;  conditional E-value: 4.2e-40
     DUF1770   1 aetlqtasirrapspehdlnpstaaskkepvtleekskkddesldskeeddeedeipysvirpvsrrqtlpPlPDLRFeqSYLkSiakAdtwwkvaliT 99 
                 aet+q+ +ir++p+ + d +pstaa+kkep t+++ +++ d+ ++   +d ++d+ipysv++p++++++lpPlPDLRFeqSYL+Sia+Adtwwkv+liT
  CCE30885.1  11 AETIQAGHIRSHPDINFDAAPSTAADKKEPYTVHSPRAHGDDIIH---VD-DDDDIPYSVLKPARKSHNLPPLPDLRFEQSYLRSIAHADTWWKVVLIT 105
                 89*******************************999887777777...44.689********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1287.26
//
Query:       CCE30886.1  [L=599]
Description: uncharacterized protein CPUR_04737 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0021   17.6   0.0     0.0045   16.5   0.0    1.6  1  WHIM1        WSTF, HB1, Itc1p, MBD9 motif 1
  ------ inclusion threshold ------
      0.016   13.3  16.9      0.026   12.7  16.9    1.2  1  DNA_pol_phi  DNA polymerase phi
        2.6    6.9   6.2        4.5    6.1   6.2    1.4  1  IFT57        Intra-flagellar transport protein 57


Domain annotation for each model (and alignments):
>> WHIM1  WSTF, HB1, Itc1p, MBD9 motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.5e-07    0.0045       4      45 ..     159     201 ..     156     202 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.5e-07
                 -GGG-CCCCCSTCCCS-HHHHHHHHHHHHHHHCCC.-CCHHHH CS
       WHIM1   4 dpllpdeLakggYyeLspeeklkiLkiLcdlllss.savReei 45 
                 ++  ++  +  ++ +++p+e+l++L++L+ + + s   v+  i
  CCE30886.1 159 WEDKNPLSGGATFKSMTPSERLTLLRTLIIWSMASsDTVKALI 201
                 55555555556699*********************54444555 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7  16.9   4.3e-06     0.026     635     725 ..     438     551 ..     424     560 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.3e-06
  DNA_pol_phi 635 aelfedededeeddeeeeeeddeededseedddeeesdedeededdedvdeid.......................elreklaealgesg..ededdd 707
                  ++   d+de+e ++ ++e+++  +    e++d+++++de+  +e+de+ ++++                       +l+ +l+ + ++ +     d++
   CCE30886.1 438 RQ--SDDDESEVESGDDEDDKYVQVRVGESEDEDDDEDENGGEEEDESYNQDEmiedgivveqpqtlvvrlsvtppKLKTALTSVDQTPNmlPTPDAQ 533
                  22..2233333333333333222222222444444444444466666666655777899*************99999999999999999999999999 PP

  DNA_pol_phi 708 dsdsDedmdDeqMmaLDe 725
                  d + D  ++D +M+++ +
   CCE30886.1 534 DWKTDTSVSDSKMFEMQD 551
                  9999999*******9976 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.2   0.00076       4.5     134     250 ..     435     563 ..     411     572 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00076
       IFT57 134 eeeeev.eddaelelekveeeelikseeededeedeeeelklesekkeekekekeeeiieskvdaaeWklEleR...vlpqLkv..........ti.ka 217
                 + +++  +d++e+e  + e+++ ++    ++++ed++e    e+  +ee+e+ +++e+ie  +  ++ ++ + R     p+Lk            +   
  CCE30886.1 435 SRQRQSdDDESEVESGDDEDDKYVQVRVGESEDEDDDE---DENGGEEEDESYNQDEMIEDGIVVEQPQTLVVRlsvTPPKLKTaltsvdqtpnMLpTP 530
                 33344446799999999999999987776666666622...2444445566777888888887777777777775533456666666666666433467 PP

       IFT57 218 dakdWrahleqmkkhkksieeslpetksqlkkl 250
                 da+dW+++     +   +++++ p +  ql+ +
  CCE30886.1 531 DAQDWKTDTSVSDSKMFEMQDAPPVLDAQLSSM 563
                 888888887766666667776666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4354.13
//
Query:       CCE30887.1  [L=254]
Description: probable 60S ribosomal protein L8.e [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-41  140.0   5.8    5.9e-41  139.6   4.2    1.8  2  Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
    9.7e-15   54.3   0.1    2.8e-14   52.8   0.1    1.8  1  Ribosomal_L2    Ribosomal Proteins L2, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.16   1.4e+03      79     110 ..      20      55 ..      13      69 .. 0.69
   2 !  139.6   4.2   6.6e-45   5.9e-41       2     115 ..      98     224 ..      97     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.16
                     ----STTHHHHT....TBS----SSSS-TTTSSS-- CS
  Ribosomal_L2_C  79 kklgkAgrkrwl....grrpkvrGvamnpvdHphGG 110
                     ++l kA +k       +r   vrGv+++ +  p  G
      CCE30887.1  20 TRLNKAPAKFRTldyaERHGYVRGVVKDIIHDPGRG 55 
                     566666666555566577788999998887776554 PP

  == domain 2  score: 139.6 bits;  conditional E-value: 6.6e-45
                     SSS-EBSSSS-TTB-BBSE-SSTTS--SSS-SSSB-EEBB-B...SSEEEEEETTS-EEEEETTSBEBES-BS-TTCTT----STTHHHHT.... CS
  Ribosomal_L2_C   2 vGnvlplknipeGtivhnielkpgkggklarsaGtyaqvvak..egkkvtvklpSgevrkvssecrAtiGvvsngehkekklgkAgrkrwl.... 90 
                     vGnvlpl+++peGt+v n+e+k+g++g+l r++G y +v+++  ++ k+++klpSg ++ v s++r +iG+v++g++++k+l+kA+r+ ++    
      CCE30887.1  98 VGNVLPLGEMPEGTVVSNVEEKVGDRGSLGRTSGGYITVIGHnpDEGKTRIKLPSGAKKIVLSSARGMIGIVAGGGRTDKPLLKASRAKHKfavk 192
                     7*****************************************6559************************************************* PP

                     .TBS----SSSS-TTTSSS--SS....SS..- CS
  Ribosomal_L2_C  91 .grrpkvrGvamnpvdHphGGGe....Gk..t 115
                      + +pk+rGvamnpvdHphGGG+    Gk  t
      CCE30887.1 193 rNSWPKTRGVAMNPVDHPHGGGNhqhiGKasT 224
                     ***********************666665323 PP

>> Ribosomal_L2  Ribosomal Proteins L2, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.1   3.2e-18   2.8e-14       1      76 [.      11      89 ..      11      90 .. 0.94

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 3.2e-18
                  TB-TT--BSSTT--------EE-B--S---SS--EEEEEEE--TT-SS-EEEEEETTTEEE.....EEE--SS--SS-EE- CS
  Ribosomal_L2  1 GrnnsgritvrhrggGhkkkyrlidfkrnkekvkgkVveieyDpgRsApiAlvkyedgekr.....yiiapeglkvGdtvv 76
                  Gr++ + + +r  +    +k+r +d+++++++v+g+V++i++DpgR Ap+A v +    k+      +ia eg+ +G++++
    CCE30887.1 11 GRGSIFTANTRLNKA--PAKFRTLDYAERHGYVRGVVKDIIHDPGRGAPLAKVTFRHPYKFkqvseTFIANEGMYTGQFIY 89
                  99999**********..****************************************66666677799************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:01.16
# Mc/sec: 662.03
//
Query:       CCE30888.1  [L=346]
Description: related to adenosine kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-65  219.5   0.0    6.9e-65  219.3   0.0    1.0  1  PfkB      pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.3   0.0   3.8e-69   6.9e-65       3     301 ..      25     339 ..      23     340 .. 0.95

  Alignments for each domain:
  == domain 1  score: 219.3 bits;  conditional E-value: 3.8e-69
                 EEEEEEEEEEEEEEECSSH...TTSEEEESEEEEEEESHHHHHHHHHHHTT..-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEE CS
        PfkB   3 kvvviGealidliavsekl...egelvevktveksaGGagaNvAvalarlg..advafigavGdDnfGeflleelkkegvdtdyvkidedtrtglaliv 96 
                  +++++++ +d+i+++ek+   +++l ++ + +  aGGa++N+A+++++    ++v+++g  GdD++++ + +  k++g++++y + d++++tg + +v
  CCE30888.1  25 LLAKYDLKANDAILAEEKHlplYEDLLNNYDAKLIAGGAAQNSARGAQYILppNSVVYLGGAGDDKYSAIMHDAVKAAGLRVEYRV-DKEHKTGRCGVV 122
                 6899******************************************************************************7777.9999******** PP

                 ETTTSEEEEEEEEGGGGGHHHHHHH..HHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHH.HHHHHHHHHCTESEEEEEHH CS
        PfkB  97 vdedgertivfnrgaaadltkeele..ededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaq.fkeallellaladllkpnee 192
                 ++++ +r++++++gaa++++ ++l+  e ++l+e+a+++y++g + +++p a++e++++aa++++ f++ l++p+++q fk+ +++  ++ d++++ne+
  CCE30888.1 123 ITGH-NRSLCTDLGAANHYDLDHLKkpEIWSLVENAEVFYVGGYHFTVCPPAIMELAKQAAEKNKIFVLSLSAPFIPQfFKDPVDASAPYWDYVIGNET 220
                 **97.9********************************************************************************************* PP

                 HHHHHHTSCT....HSHHHHHHHHHHHHHTTS..SEEEEEEGGGEEEEEE....TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHH CS
        PfkB 193 Elealtgekl....edieealaalhklkakga..ktvvvtlGkeGalvve....kdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrf 281
                 E++a +++++    e ++ a+++++  k+ g+  ++ ++t+G e++lv+     + +e++v+a+ k+++ Dt+GAGD+f+gg+la++++gk+l++++ +
  CCE30888.1 221 EAAAYAESHDlpnkEPMHVAMHLANLPKENGKrkRVAIITQGTEPTLVAVqgedQIKEFPVHAISKEQINDTNGAGDAFAGGLLAGIMQGKDLATSVDM 319
                 *************9666666666655555555559**************9998888999**************************************** PP

                 HHHHHHHHHTSSSSSTCSCC CS
        PfkB 282 anavAalvvqkkgaiaslpt 301
                 ++++A l++q+ g++++ p+
  CCE30888.1 320 GQWLARLSIQELGPSYPFPK 339
                 **************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2524.20
//
Query:       CCE30889.1  [L=1020]
Description: uncharacterized protein CPUR_04740 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-47  162.2   0.5    1.7e-47  162.2   0.5    1.9  2  EST1_DNA_bind  Est1 DNA/RNA binding domain
    5.2e-20   72.5   0.5    5.2e-20   72.5   0.5    3.6  2  EST1           Telomerase activating protein Est1


Domain annotation for each model (and alignments):
>> EST1_DNA_bind  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1      0.68   6.1e+03      54     104 ..      77     122 ..      67     123 .. 0.56
   2 !  162.2   0.5   1.9e-51   1.7e-47       1     281 [.     197     472 ..     197     473 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.68
                    HHHHHHHT-TT-HHHHHHHHHHHHHTT---HHHHHHHHHHTTHHHHHHHHS CS
  EST1_DNA_bind  54 eNLellfekirkklekgenkqskeskqektpeellkrliilFlrlhgklft 104
                     +L + +   +++ + +++  s        + +++++  ++Flr+ +k+++
     CCE30889.1  77 WSLHTSINSEYRRIQGRLKHTSH-----AVERRKIEKSYHNFLRVAQKFYK 122
                    45555555555544444444443.....34456666666999999999987 PP

  == domain 2  score: 162.2 bits;  conditional E-value: 1.9e-51
                    HHHHHHHHHHH-TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHHHBSB--TTHHHHHHHHHT-TT-HHHHHHHHHHHHHTT---HHHHHHHHHHTTH CS
  EST1_DNA_bind   1 AlrYYllAaellPsnGepyNQlgviaiysedkldavYyylRSllssnpfptAkeNLellfekirkklekgenkqskeskqektpeellkrliilFl 96 
                    Al+YY lA++l P++G++y+Q+g+++++++++ld+vYy++RS ++++++p A  NLe +f+    +l k + + s+       ++++ +++   F+
     CCE30889.1 197 ALTYYGLAHQLDPESGHAYHQMGIVHLDQGNHLDVVYYFYRSWAVESSHPLANANLEAEFKSL--SLSKDRLNASD-------TQDAFSMW---FV 280
                    89***********************************************************98..66666667666.......78999999...** PP

                    HHHHHHHSTTTT....TSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S--SXXXXXXXXXXXXXHHHHHHHHHHHHHHHTGG CS
  EST1_DNA_bind  97 rlhgklftgtsf..kdelerevlkklqillseslkernlkdaslllkmllinifaienlkdkssgeeskektllllrlalrfifelfglllekvet 190
                    +lh+ +++g++f  + ele+e++++l+++  + +++       +llkm lini+a ++++++  ++++ + ++++ +++lrf   +++++++ ve 
     CCE30889.1 281 KLHALFYKGENFpqQAELEGEIMHRLEMACHSEQSTV------TLLKMALINIAAHHVASTNYAESQTPA-ASRFYQFTLRFNAMFISHFCATVEV 369
                    ************755***************9999986......899*********999999999887665.555789999**999*******9988 PP

                    GTTT.................-SS-THHHHHHHHHHHHHTT-HHHH.HHHHT-HHHHHHHHHHHHHHHH----------------S..S--HHHHH CS
  EST1_DNA_bind 191 lealk............rdketpsatrvLpalrvylswlksnksll.edvekdeklvsslsdllnellssellnksfdvekdpkrd..ylleEDie 271
                     +++               k+tp a  +Lp lr+y+ wl++++ ++ ++ve+   +v ++++ l+++ +   l + f+ +++   +  yll+ED+ 
     CCE30889.1 370 ELKEAasveesgttsgtCAKFTPAAQALLPVLRIYSMWLAAHRQEIrAGVEAFGGVVPAMVQKLANVFT---LLCVFSCSQEGLATcpYLLSEDLG 462
                    888888899*******99*************************55549999999999999999988888...5555555554433344******** PP

                    TTTBGGGTTS CS
  EST1_DNA_bind 272 lkgFsplkea 281
                    ++gF pl+e+
     CCE30889.1 463 IQGFIPLSED 472
                    *******875 PP

>> EST1  Telomerase activating protein Est1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.5   5.8e-24   5.2e-20       2     135 ..      72     187 ..      71     188 .. 0.91
   2 ?  -13.0  15.1         2   1.8e+04     106     106 ..     619     619 ..     502     697 .. 0.69

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 5.8e-24
                 HHHHHHHHTHHHHHHHHHHHHHHHH-------H.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-B-.HTT............-.....--------- CS
        EST1   2 veellWrkvyyevikllkkqlknldsapkkkkkpvekrklklklvkflksaigfYqsliqrllsefel.elssvlkvilksktklpekesseksetese 99 
                 +ee lW  ++ ++++++++  ++l+     ++++ve+rk+++ + +fl+ a++fY+ +iqrl +++++ el+++++ i+ ++ +               
  CCE30889.1  72 AEEALWS-LHTSINSEYRRIQGRLK----HTSHAVERRKIEKSYHNFLRVAQKFYKGYIQRLTARYDVpELRRIARGIDAQQMEG-------------I 152
                 79*****.*****************....5789**********************************999999999888766664.............4 PP

                 TTB--TTSHHH.HHHHHHHHHHHHHHHHHHHHHHHH CS
        EST1 100 eeksslssseqksavlklvhrcLiyLGDlaRYreqf 135
                 ++ s+ + + + + v+k+++++L+++GDl+RYr q+
  CCE30889.1 153 DQISPVPAELR-KMVSKSCYSTLLRMGDLSRYRTQA 187
                 45566899999.*********************997 PP

  == domain 2  score: -13.0 bits;  conditional E-value: 2
                 T CS
        EST1 106 s 106
                 s
  CCE30889.1 619 S 619
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1020 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2211  (0.12332); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.14u 0.34s 00:00:01.48 Elapsed: 00:00:00.52
# Mc/sec: 5925.63
//
Query:       CCE30890.1  [L=140]
Description: probable G10 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-26   90.4   0.1    9.6e-26   90.3   0.1    1.1  1  G10       G10 protein
  ------ inclusion threshold ------
       0.12   12.4   0.0        3.4    7.8   0.0    2.4  2  Melittin  Melittin


Domain annotation for each model (and alignments):
>> G10  G10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.1   1.1e-29   9.6e-26       1      89 [.       1      90 [.       1     117 [. 0.91

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 1.1e-29
         G10  1 mpkir.tkkkkkppegfekiedtleeleaklreaekeskeskkkeeslWkiarinhersryvyelyykrkaiskelydyllkekyadaeL 89
                mp ir ++k+k+pp+gf++ie+ l  +++k+++a+++++ +  k+++ W+i++i+h+rsryvy+lyy+++aisk+ly++llk++ +  ++
  CCE30890.1  1 MPAIRpSSKRKPPPDGFSDIENDLLIFSNKMKDAQNKPAPAGPKHQAQWEIFQISHQRSRYVYDLYYEKEAISKQLYNWLLKNGSVAFDV 90
                7889977888999*********************************************************************99876554 PP

>> Melittin  Melittin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2     0.032   2.9e+02      21      25 ..      92      96 ..      89      97 .. 0.87
   2 ?    7.8   0.0   0.00038       3.4       5      24 ..     120     139 ..     118     140 .] 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.032
                HHHHH CS
    Melittin 21 KRKRq 25
                KRKRq
  CCE30890.1 92 KRKRQ 96
                9***9 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00038
                 HHHHHHTHHHHHHHHHHHHH CS
    Melittin   5 vLKvLttGLPALisWiKRKR 24 
                 vL v   G P  i Wi R+R
  CCE30890.1 120 VLAVDVEGAPPAIEWIMRQR 139
                 7888899***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1025.33
//
Query:       CCE30891.1  [L=124]
Description: probable NADH2 dehydrogenase (ubiquinone) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-06   28.8   0.2    2.2e-06   28.3   0.2    1.3  1  Complex1_LYR_2  Complex1_LYR-like
      0.001   19.0   0.2     0.0019   18.2   0.2    1.5  1  Complex1_LYR    Complex 1 protein (LYR family)


Domain annotation for each model (and alignments):
>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.2   2.4e-10   2.2e-06       1      71 [.      25     104 ..      25     114 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 2.4e-10
  Complex1_LYR_2   1 vlsLYrrllrelrelppelr......slgdayvraefrrhkhlknpe.eialflknqreYaellerynpg...lkmteeek 71 
                     v+s Yr+++r+++e +++++      +++++++r+ef++++ +++++   +l+ k+  eY+e+++  + +   ++ ++ee+
      CCE30891.1  25 VISSYREWMRAAPE-IQTMYnmplpiAALRTRMRQEFEKNRFVNKLNiVDVLLFKSHAEYQETMNFWKQTthvMTYFKEEN 104
                     7899********95.45555666788*************776664443445777888888888855533344444455555 PP

>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   2.1e-07    0.0019       1      42 [.      23      68 ..      23      84 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.1e-07
  Complex1_LYR  1 rqvLsLYRalLRearkfpdyn....treyfrrriRdeFrknkhvtD 42
                  r+v+s YR ++R+a  ++       + + +r r R+eF+kn+ v+ 
    CCE30891.1 23 RRVISSYREWMRAAPEIQTMYnmplPIAALRTRMRQEFEKNRFVNK 68
                  6999**********7776544588888888************8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 997.03
//
Query:       CCE30892.1  [L=155]
Description: probable DNA-directed RNA polymerase I/III chain AC19 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-30  103.3   0.0    5.7e-30  102.9   0.0    1.2  1  RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
    3.6e-12   45.5   0.0    5.2e-12   45.0   0.0    1.3  1  RNA_pol_L    RNA polymerase Rpb3/Rpb11 dimerisation domain
  ------ inclusion threshold ------
      0.028   14.3   0.4      0.031   14.2   0.4    1.2  1  Myc_N        Myc amino-terminal region


Domain annotation for each model (and alignments):
>> RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   9.5e-34   5.7e-30       2      74 ..      67     138 ..      66     139 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 9.5e-34
                  EEEEEES--HHHHHHHHHHHTTSTTEEEEEEECSSTTTSEEEEEEEESTSS-HHHHHHHHHHHHHHHHHHHHH CS
  RNA_pol_L_2   2 ltfeingEDhTLgnlLrhlllknpsVefagYkipHPlepkmnlriqtkssnnpleaLkkalkdlldicdelee 74 
                  ++fe+ +E hTLgn+Lr++++knp+Vef++Y+i HP+epkmn+riqt++   +++aLkk+l+dl+d+cd + +
   CCE30892.1  67 ASFEFTDEGHTLGNALRYIIMKNPDVEFCAYTIAHPSEPKMNFRIQTYD-GAAIDALKKGLRDLQDVCDVVAD 138
                  79*********************************************95.88*****************9865 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   8.7e-16   5.2e-12       1      69 []      68     133 ..      68     133 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 8.7e-16
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L   1 efllrgvdhtlgNaLRrillsevpgvaiea.....pvvkvntdkdklilevetdgslkPeealkeAlkiLkekl 69 
                 +f++ +++htlgNaLR+i++ ++p+v+++a     p       + k++++++t     + +alk++l++L++ +
  CCE30892.1  68 SFEFTDEGHTLGNALRYIIM-KNPDVEFCAytiahP------SEPKMNFRIQTYDGA-AIDALKKGLRDLQDVC 133
                 6999****************.*********877662......4666******87543.9***********9976 PP

>> Myc_N  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   5.2e-06     0.031     211     267 ..       6      64 ..       1     105 [. 0.63

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.2e-06
       Myc_N 211 ssssasaassssssdskals..sseedvlsesdeeeeeeeeeeeeidVVtvekrrsssk 267
                 +++ asa++++s +d   ++  + +ed++ e+   e+eeeeeeeei+V  v+    s+ 
  CCE30892.1   6 TNIDASASQDVSMQDVPPSAqpAVSEDAEMEDGVPENEEEEEEEEIEVQRVKILPGSTD 64 
                 455556666666665533330033445555555567777899******98876555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1261.03
//
Query:       CCE30893.1  [L=447]
Description: uncharacterized protein CPUR_04744 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3580.62
//
Query:       CCE30894.1  [L=492]
Description: probable serine/threonine protein kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-49  167.8   0.0      4e-49  167.3   0.0    1.1  1  Pkinase      Protein kinase domain
    5.9e-27   94.6   0.0      8e-27   94.1   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0029   17.0   0.0     0.0045   16.3   0.0    1.3  1  Kinase-like  Kinase-like
  ------ inclusion threshold ------
       0.02   14.2   0.0      0.035   13.5   0.0    1.3  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3   0.0     9e-53     4e-49       5     264 .]     214     479 ..     211     479 .. 0.88

  Alignments for each domain:
  == domain 1  score: 167.3 bits;  conditional E-value: 9e-53
                 EEEEEESSEEEEEEEET..TTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   5 eklGeGsfGkVykavek..etgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladllerkgslsee 98 
                 e +G+G+fG V   ++k  +++k +AvK+++++ ++ +k+  k++++E  i  +l+hpn+++ ++ +++ k +++ v+e++ gg+l +l+  +g+l+ +
  CCE30894.1 214 EVVGRGAFGIVRISHKKlgSSEKLFAVKEFRRRPEETEKKysKRLTAEFCISSSLRHPNVIHTLDLLKDaKGDFCEVMEFCAGGDLYTLILSSGKLEVQ 312
                 789********8776653368999********9999998899**************************978899************************* PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHH CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvlkeney.skkvDvWslGvilyell 191
                 ea  ++kq+++g+eylH++g+ HrDlKpeN+L+ ++g lKitDFG  + ++   +     ++  +g+  Y++PE   ++e+  ++vDvW++Gvi + + 
  CCE30894.1 313 EADCFFKQMMRGVEYLHEMGVAHRDLKPENLLLTTRGALKITDFGNGECFRMAWEtdahmVSGLCGSAPYISPEEYVDKEFdARAVDVWACGVIYMAMR 411
                 *********************************************999888766667888999**********99988888799*************** PP

                 HSS-STTTSSHHHHHHHHHHT.HHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 192 tgkppfsgekgkekvekeldq.lekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 tg+++++  k++e      d+ + + lk  ++++   p +s     +++++ ++l+  p +Rlta+++l+++++
  CCE30894.1 412 TGRHLWRLAKKDE------DEfFARYLKGRRDEEGYGPIESLHRARCRNVIYSVLDPHPARRLTAAQVLKSEWV 479
                 *******554444......44122333444465666677777799***************************96 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.0   1.8e-30     8e-27       3     205 ..     212     416 ..     211     475 .. 0.81

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 1.8e-30
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEES...TTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlk...eeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkke 96 
                   ++ +G+GafG V   + k    ++e   avK ++   ee++++ +++l+ e  i ++l+hpn+++ l +    ++  + v+e+++gGdL + + ++ 
   CCE30894.1 212 CQEVVGRGAFGIVRISHKK--LGSSEKLFAVKEFRrrpEETEKKYSKRLTAEFCISSSLRHPNVIHTLDLLKdAKGDFCEVMEFCAGGDLYTLILSS- 306
                  57899******99998888..77788899****962224555555899************************77788****************9997. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET..TTSSEEEETTSSTSGGGGS-HHHHHHSEEEH.HHHHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi..ekddeyvkkeeaklpvkWmapEslkekkfts.ksDvWsf 191
                    kl++++  +f  q+ +G+eyL+++ + Hrdl   N Ll+++   ki+DfG  +      + + ++ ++   +  +++pE   +k+f   + DvW+ 
   CCE30894.1 307 -GKLEVQEADCFFKQMMRGVEYLHEMGVAHRDLKPENLLLTTRGALKITDFGNGECFrmAWETDAHMVSGLCGSAPYISPEEYVDKEFDArAVDVWAC 403
                  .9**************************************************766552133444466667778899***********986157***** PP

                  HHHHHHHHTTSSGT CS
  Pkinase_Tyr 192 GvllwEiftlgesp 205
                  Gv+ + + t g++ 
   CCE30894.1 404 GVIYMAMRT-GRHL 416
                  **9887766.5554 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     1e-06    0.0045     151     189 ..     319     357 ..     273     410 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1e-06
  Kinase-like 151 lqlirlaanLqakglvhgkftvdnllldekgglmlggft 189
                   q++r + +L++ g+ h +++++nlll  +g l++++f+
   CCE30894.1 319 KQMMRGVEYLHEMGVAHRDLKPENLLLTTRGALKITDFG 357
                  588999*******************************97 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.7e-06     0.035     123     162 ..     317     352 ..     297     363 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.7e-06
         Kdo 123 llkavgrliaklhragvnHadlyaknillqqeeeeeaeiw 162
                  +k+  r ++ lh++gv H+dl + n+ll +++     + 
  CCE30894.1 317 FFKQMMRGVEYLHEMGVAHRDLKPENLLLTTRG----ALK 352
                 5678889999********************998....444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 4007.19
//
Query:       CCE30895.1  [L=650]
Description: related to calcium/calmodulin dependent protein kinase C [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-56  191.6   0.0    9.5e-51  172.7   0.0    2.4  2  Pkinase         Protein kinase domain
      2e-36  125.6   0.0    4.5e-34  117.9   0.0    2.5  3  Pkinase_Tyr     Protein tyrosine kinase
    2.5e-10   40.2   0.0    1.7e-08   34.2   0.0    2.2  2  Kinase-like     Kinase-like
     0.0047   15.8   0.1      0.023   13.5   0.0    2.0  2  Pkinase_fungal  Fungal protein kinase
     0.0054   16.7   0.1      0.011   15.7   0.1    1.7  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.3e-06    0.0045       1      46 [.     107     151 ..     107     152 .. 0.90
   2 !  172.7   0.0   2.7e-54   9.5e-51      45     264 .]     194     408 ..     183     408 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.3e-06
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvl 46 
                 y+ +e++G+GsfG V +a+ ++ g+++AvK+++k + +k+ ++++l
  CCE30895.1 107 YVIVEEIGRGSFGAVHRAT-DQFGNEFAVKEFSKARLRKRAQSNIL 151
                 67899**************.699************99999988776 PP

  == domain 2  score: 172.7 bits;  conditional E-value: 2.7e-54
                 HHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHHHHSS..--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE CS
     Pkinase  45 vlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladllerkgs..lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKi 139
                 +++Ei+i+kkl+hpn+v+l+ev+ +  +d+ly+v++++++g ++++  +k +  +s+e ++ +++ ++ g+eylH++g+iHrD+Kp+N+L++++++lKi
  CCE30895.1 194 IREEIAIMKKLNHPNLVQLIEVLDDpeEDSLYMVMDMCKKGVIMSVGLDKCAdpYSDESCRYWFRDLVLGIEYLHAQGVIHRDIKPDNLLLSDDEVLKI 292
                 789*********************98899************9888877665556********************************************* PP

                 -SGTTSEESSSSCS..BCTTTSCGGGS-HHHH.TTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS. CS
     Pkinase 140 tDFGlakelesssk..ltsfvgtseYlAPEvl.keney.skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei. 233
                 +DFG+++ +++s +  +++  g++ +++PE+  k++++ +k++D+Ws+Gv+ly+l +gk pf+           + +      i + +k + p   e  
  CCE30895.1 293 ADFGVSEMFDKSDSmrVSKSAGSPAFMPPELCgKYQQVsGKAADIWSMGVTLYCLKYGKIPFNRA--------GVLE------IYEAVKSDAPVLPEGe 377
                 ***********99999999*************8788888************************22........2222......3333445555554443 PP

                 -HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 seeakdllkkllkkdpkkRltaeellqhpyl 264
                 + ++ dl+ ++l+kdp++R+t+ el +hp++
  CCE30895.1 378 DADFADLMGRILEKDPERRITMPELREHPWV 408
                 889***************************6 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0     0.004        14       3      37 ..     109     138 ..     107     152 .. 0.73
   2 !  117.9   0.0   1.3e-37   4.5e-34      47     257 ..     193     404 ..     181     405 .. 0.87
   3 ?   -3.5   0.0       1.4     5e+03     235     252 ..     575     592 ..     568     594 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.004
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEES CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlk 37 
                  + +++G+G+fG V+++t +        + avK ++
   CCE30895.1 109 IVEEIGRGSFGAVHRATDQ-----FGNEFAVKEFS 138
                  5689***********9977.....55666777664 PP

  == domain 2  score: 117.9 bits;  conditional E-value: 1.3e-37
                  HHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEE CS
  Pkinase_Tyr  47 elleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvv 142
                   + ee++imkkl+hpn+v+l+ v    +e++l++v++++k+G + +   +k  ++ + ++   +  ++  G+eyL+++ ++Hrd+   N Lls+++v 
   CCE30895.1 193 LIREEIAIMKKLNHPNLVQLIEVLDdpEEDSLYMVMDMCKKGVIMSVGLDKCADPYSDESCRYWFRDLVLGIEYLHAQGVIHRDIKPDNLLLSDDEVL 290
                  4568********************9888888***********88877555559********************************************* PP

                  EE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHH CS
  Pkinase_Tyr 143 kisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelm 238
                  ki+DfG+++   k+d+++++++a  p  +m+pE   + +    +++D+Ws Gv+l+ + ++g+ p+++    e++e++k++  +  pe   +++++lm
   CCE30895.1 291 KIADFGVSEMFDKSDSMRVSKSAGSP-AFMPPELCGKYQqvSGKAADIWSMGVTLYCL-KYGKIPFNRAGVLEIYEAVKSDAPV-LPEGEDADFADLM 385
                  **********9777777777766655.79****9876664466789**********76.56*****************988765.588889******* PP

                  HHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 239 kkcweedpeeRptfselve 257
                   + +e+dpe+R t+ el+e
   CCE30895.1 386 GRILEKDPERRITMPELRE 404
                  **************99976 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.4
                  HHHHHHHT-SSGGGS--H CS
  Pkinase_Tyr 235 yelmkkcweedpeeRptf 252
                   e +k+ ++++p++Rpt+
   CCE30895.1 575 EEAIKRHMDAKPSKRPTM 592
                  567899999*******98 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.011        38      12      49 ..     105     141 ..      99     156 .. 0.82
   2 !   34.2   0.0   4.6e-12   1.7e-08     158     252 ..     265     356 ..     253     370 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.011
  Kinase-like  12 rtlvrgellkkgdrsvvfevkdqetgeplavkvfllps 49 
                   ++v +e +++g +++v +++dq  g+++avk f+   
   CCE30895.1 105 NQYVIVEEIGRGSFGAVHRATDQF-GNEFAVKEFSKAR 141
                  57888999***************9.999****998654 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 4.6e-12
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggf..taLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPlt 251
                   +L+a+g++h ++++dnlll  +  l++ +f  ++++ + +++++s+ +   +f PpEl+g+   y++     +  + d W +G++ y +   k+P++
   CCE30895.1 265 EYLHAQGVIHRDIKPDNLLLSDDEVLKIADFgvSEMFDKSDSMRVSKSAgsPAFMPPELCGK---YQQ----VSGKAADIWSMGVTLYCLKYGKIPFN 355
                  79**************************987336899999999998777679**********...666....788899***********999999997 PP

  Kinase-like 252 l 252
                   
   CCE30895.1 356 R 356
                  6 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       0.2   7.2e+02     216     297 ..      35     115 ..      11     117 .. 0.47
   2 !   13.5   0.0   6.4e-06     0.023     312     381 ..     257     319 ..     249     328 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.2
  Pkinase_fungal 216 ddiaeiRkgldvtkaekfrskrkvvsssssqelsskaevklkksesskkvekrsvdssv...stskrsrlenrvhrrlvispvGk 297
                     d+++++R+ l+  ++  + s+  v+++ s q   s a+ ++++  s ++  k++ d++v   +++   r+ +r+ + ++++++G+
      CCE30895.1  35 DHVDDLRDALSRAHP-PLASA--VTEKHSLQGFASPAR-QHRRTASVHREIKETLDARVefmNDEADGRTYHRINQYVIVEEIGR 115
                     444555555555444.22221..112222222111111.1122222222222333333333433333445599999999999997 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 6.4e-06
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFm 381
                     +rD + g + L+  +g++HrDi  +N+l+      +++   ++D+ +    ++ +s     +  G ++Fm
      CCE30895.1 257 FRDLVLGIEYLH-AQGVIHRDIKPDNLLLS-----DDEVLKIADFGVSEMFDKSDSM-RVSKSAGSPAFM 319
                     799*********.9****************.....4556667777776666543333.336778888888 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   3.1e-06     0.011     152     193 ..     253     295 ..      31     300 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.1e-06
                 HHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TTEEEEE--- CS
         APH 152 vlaalaallpg...elptvllHgDlhpgNllvdpddgrvtGviDf 193
                  + ++++l++g     +++++H+D++p+Nll+   d++v  + Df
  CCE30895.1 253 CRYWFRDLVLGieyLHAQGVIHRDIKPDNLLLS--DDEVLKIADF 295
                 5567778888899999*****************..5555455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.37
# Mc/sec: 5245.61
//
Query:       CCE30896.1  [L=145]
Description: related to multiple myeloma protein 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-23   82.2   0.0    3.8e-23   82.0   0.0    1.1  1  Sybindin  Sybindin-like family


Domain annotation for each model (and alignments):
>> Sybindin  Sybindin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   2.1e-27   3.8e-23       1     141 [.       3     142 ..       3     144 .. 0.88

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 2.1e-27
    Sybindin   1 ifslyiinkaGgliyqkeaneekk...earpklstneklllasmlhslkaiasklspvkakeelqgssgievletdtfkLhclqtltGiKfvlitdtkt 96 
                 ++s yi++++  +iy+k +  +++   ++ +++++++++l++++++sl+ +a kl     ++      ++ +++t ++kLh+++t++ ++f l+tdt++
  CCE30896.1   3 VYSFYIFDRHTECIYHKSWLPSTHppsSQIDITRSDDTKLIFGTVFSLRNMARKLGG---ED-----DAFISYRTGQYKLHYYETPANLRFALLTDTQS 93 
                 79****************9755531115578899**********************9...33.....489***************************** PP

    Sybindin  97 naeadsllrkiyelYsdyvlknPfyslem....pircelFdeklkelle 141
                    +++l++++ +l+++yv+knP+  +e      ++ elF+  l+++++
  CCE30896.1  94 PSMRNVLHQIYINLWVEYVVKNPLAPVEHkggeGVTNELFELGLDQFVR 142
                 ************************99875222279*******9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1121.91
//
Query:       CCE30897.1  [L=616]
Description: related to Peroxisomal assembly protein PEX3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-168  561.5   0.0     2e-168  561.3   0.0    1.0  1  Peroxin-3  Peroxin-3


Domain annotation for each model (and alignments):
>> Peroxin-3  Peroxin-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  561.3   0.0  1.1e-172    2e-168       1     470 []      66     542 ..      66     542 .. 0.93

  Alignments for each domain:
  == domain 1  score: 561.3 bits;  conditional E-value: 1.1e-172
   Peroxin-3   1 rflrrnrrklaitagvvgagYlakqYvlkkleearerlsseriakenLrrRFeqnqeDctfTvlaLLPtlteqilealdvEeitqeLqqkkaeraarss 99 
                 r+lr+nr+ +a+++g++gagY+a qYvl+k+ +arer+ss+ria+enLrrRFeqnqeDctfTvlaLLPt+t+++l+++ +E+it+e+qq k +++  ++
  CCE30897.1  66 RWLRNNRTSIACGVGIIGAGYIAAQYVLNKIVDARERMSSDRIAQENLRRRFEQNQEDCTFTVLALLPTATSNVLAEMKTEQITYEIQQIKGSARGVKQ 164
                 79*****************************************************************************************97776655 PP

   Peroxin-3 100 eakseeekssaspsved....eddskslseeesssssstvsasseassseesaseesekseke..seessskprksKaeLWnelkiksitRtltliYtl 192
                 +  s e+++ ++ps++d    e+d+ks++++ s +s+s+v+as+ a ++++ a+ + ++++++    ++++++rk+K++LW++l+i++itR++tliYtl
  CCE30897.1 165 HGVS-ESTTLSPPSIADtsltEEDGKSMATSVSLQSESGVHASQIAVPTPSVAAGSDAQQQPDaaVPATPKVSRKTKRQLWDDLTISAITRAFTLIYTL 262
                 5544.4457889999998888888*********************9998887766665555555588999***************************** PP

   Peroxin-3 193 slLtLltriQLnlLgRrsYLssvvslakeeeteeeeeeesllseatislennd...deeeeqeegedeeterkYLtfSWWLLnrGWkdvaerVeaaVee 288
                 +lLt+ltr+QLnlLgRrsYLssvvsla+++++             ti+lennd   d+ +e ++g+d++t+rkYLtfSWWLLn+GW+++++rVe+aV++
  CCE30897.1 263 ALLTMLTRVQLNLLGRRSYLSSVVSLATGAAQ------------VTINLENNDdddDDTAEPAYGSDFDTNRKYLTFSWWLLNKGWAQIMHRVESAVRT 349
                 ******************************94............455555555444899999************************************* PP

   Peroxin-3 289 vfgslslkdelsleelsellkevrkkveketeeeekrsdflsillPpreeeeevLresgil.............sleeleeesssLrkLldETsdlies 374
                 vfgsls++d +s++++ el+++vrk ve+++++e+++ d+l++llPp+++e+evLr+sgil             ++++++  s+ Lr+LldET+dl+es
  CCE30897.1 350 VFGSLSPRDLVSFDRFTELTMQVRKLVEGSSTDERQKMDWLPFLLPPPNQEDEVLRQSGILldddsppstqpdsTASSSAPRSAGLRRLLDETADLLES 448
                 ************************************************************************99778899999**************** PP

   Peroxin-3 375 pdfslvleslldegfstllesleaevafkkkesasssekaeeeeeeeeekkvkLAkllpvlsrqahailngvpneylealesvreLeafsAvvYss 470
                 p+fs+vl++lld++f+tl++++ a+ af+ +++        e+ + ++++ + L+k+l+vl+rqah+i+ngvpneyl+++e+vr L+af+AvvYss
  CCE30897.1 449 PSFSHVLTLLLDTAFETLVDKKLATEAFELPPQIPFPPP--ETMDLRASRVILLPKILSVLTRQAHVIGNGVPNEYLQDMETVRALTAFAAVVYSS 542
                 ******************************985444443..45788999**********************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4232.39
//
Query:       CCE30898.1  [L=208]
Description: uncharacterized protein CPUR_04749 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-56  190.3   0.0    2.3e-56  190.1   0.0    1.0  1  ATG101       Autophagy-related protein 101
  ------ inclusion threshold ------
      0.057   13.4   0.1        0.1   12.6   0.1    1.4  1  Mo-co_dimer  Mo-co oxidoreductase dimerisation domain


Domain annotation for each model (and alignments):
>> ATG101  Autophagy-related protein 101
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.1   0.0   2.6e-60   2.3e-56       1     154 [.      13     183 ..      13     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: 190.1 bits;  conditional E-value: 2.6e-60
      ATG101   1 eltversqvrevvkailhtIlFhRllgkvkpkdvevesldltyvavsdeelerlvdekvealvralekasssks....................gqivv 79 
                 +++++++++r+vvk+ilhtI+F+R++++++p++++v  ldlt+++v+d+ele+++d++++al+r+l++++s++                     gqi+v
  CCE30898.1  13 DVFTDPRSLRDVVKGILHTIFFTRFFPSLTPRTRDV--LDLTLPYVDDDELETMIDQRAAALERHLDAERSTSGashsssggggggggggggarGQIAV 109
                 5899********************************..*****************************99888779************************ PP

      ATG101  80 qFfekkrkkawfgkkeeevvWEqWivkvevvetprseserekvrealessLeeallkilelvnekkdhiPpitts 154
                 +Ffek+++k+w+++ eeev+WE+W++kv+v+e pr+eser+kvr+a+e++L  +++ki++++n++kdhiPpitt+
  CCE30898.1 110 RFFEKRHRKSWLSRGEEEVCWESWTIKVTVAE-PRTESERAKVRRAMEQTLLTTAMKIVSFANTHKDHIPPITTQ 183
                 *******************************9.9***************************************97 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.1e-05       0.1      67     113 ..     113     161 ..     100     169 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
                  SSS---..SSTTS-TTS-EEEEEEEEESS.....E.EEEEEEEETT--B CS
  Mo-co_dimer  67 edkereakeesretafcwvfweldvevse..lakekeilvravDealnv 113
                  e+++r++  +  e+  cw  w+++v v+e  +++e++ + ra++++l +
   CCE30898.1 113 EKRHRKSWLSRGEEEVCWESWTIKVTVAEprTESERAKVRRAMEQTLLT 161
                  566666665678999*************965666677788999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1522.30
//
Query:       CCE30899.1  [L=799]
Description: related to transcription factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-33  112.7   0.0    1.4e-32  111.8   0.0    1.5  1  Forkhead  Forkhead domain


Domain annotation for each model (and alignments):
>> Forkhead  Forkhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.0   7.9e-37   1.4e-32       1      86 [.     209     294 ..     209     295 .. 0.95

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 7.9e-37
                 ------HHHHHHHHHHT-TTT-B-HHHHHHHHHCC-HHHHCC.-CCHHHHHHHHHHHHC--EEETT.-T.TSS--EEE--TTHHHHH CS
    Forkhead   1 skPpysYaaLIaqAiksspekkltLseIyefieenfpyyrtaakkgWqnSirhnLslnkcFekvpreee.egkgslwtidpeseekf 86 
                 skP +sYa+LI +Ai++sp ++ltL++Iy++i++n+++y  + ++gWqnSirhnLsl+k F+k++r+++ +gkg++w i+p  e++f
  CCE30899.1 209 SKPAHSYAQLIGMAILRSPLRRLTLAQIYKWISDNYSFYGPS-DAGWQNSIRHNLSLHKNFIKIERPKDdPGKGNYWGIEPGTEAQF 294
                 69**************************************95.***********************66548**********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 5910.08
//
Query:       CCE30900.1  [L=109]
Description: uncharacterized protein CPUR_04751 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 808.56
//
Query:       CCE30901.1  [L=1510]
Description: related to PAN1-actin-cytoskeleton assembly protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-25   89.1   0.0    1.1e-13   51.0   0.0    2.8  3  EF-hand_4  Cytoskeletal-regulatory complex EF hand
     0.0019   18.6  52.1     0.0019   18.6  52.1    7.8  9  DUF1720    Domain of unknown function (DUF1720)
     0.0044   17.5   0.1        0.2   12.1   0.0    2.8  2  EF-hand_7  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   2.2e-12   1.3e-08       7      91 ..     210     293 ..     204     304 .. 0.82
   2 !   51.0   0.0   1.8e-17   1.1e-13       5      98 ..     471     563 ..     468     567 .. 0.91
   3 ?   -3.2   0.0       1.3     8e+03      27      65 ..    1082    1120 ..    1075    1121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.2e-12
   EF-hand_4   7 leikkyweifsglkped.nkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewl 91 
                 ++  k+  +f++   e+  +++gdk+  +l  s+l+ + l++iw+lad    g+l f ef++am l    +  + k++P+ lP+ +
  CCE30901.1 210 QDQSKFETLFKSAVGENsTTMSGDKARDLLLRSRLDGETLSHIWTLADTTRAGQLYFPEFALAMYLCN--LKMTGKSLPAGLPDNI 293
                 667788889987665541689*******************************************9974..4445567888888765 PP

  == domain 2  score: 51.0 bits;  conditional E-value: 1.8e-17
   EF-hand_4   5 eeleikkyweifsglkp.ednkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpeskah 98 
                  + e+ +y  +f++ +   + ++ gd++  ++ +s le+  le++w+l+d  + g+ld++ef++am+li+  +ng    +P++lP  lvp s ++
  CCE30901.1 471 TKEEKTRYDSLFRAWDGfGKGYIGGDQAIEIFGQSGLEKPDLERVWTLSDHGNKGRLDLDEFAVAMHLIYRKLNGY--PLPNTLPPELVPPSTRN 563
                 5678999999**9998735789****************************************************96..69**********99876 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.3
   EF-hand_4   27 tgdkvapvlknskleedklekiwdladidedgkldfeef 65  
                   ++++a+v ++++l+ +k e+  +   i+e  + + +ef
  CCE30901.1 1082 EEEHAASVAEEARLTREKEEQHQETQQIEETARAEQDEF 1120
                  568899999999999999999999999998888888888 PP

>> DUF1720  Domain of unknown function (DUF1720)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6  52.1   3.2e-07    0.0019       8      74 ..      35     106 ..      30     107 .. 0.74
   2 ?   -8.5  41.9         3   1.8e+04       2      60 ..      98     173 ..      97     196 .. 0.57
   3 !   12.1  35.6   3.4e-05      0.21      11      74 ..     332     399 ..     325     399 .. 0.77
   4 !   15.9  19.2   2.2e-06     0.013       8      72 ..     378     448 ..     377     450 .. 0.82
   5 ?   -0.2   0.0      0.23   1.4e+03      38      45 ..     588     595 ..     555     605 .. 0.68
   6 ?   -2.4   0.1       1.1   6.5e+03      44      59 ..     785     810 ..     777     817 .. 0.59
   7 ?   -2.9   0.5       1.6   9.7e+03      23      33 ..    1046    1056 ..    1028    1064 .. 0.47
   8 ?   -2.2   0.2      0.99   5.9e+03      38      51 ..    1261    1275 ..    1236    1297 .. 0.63
   9 ?   -8.0  12.3         3   1.8e+04      15      45 ..    1426    1464 ..    1398    1493 .. 0.55

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.2e-07
     DUF1720   8 fqppqqqqpqqq...qplqpqpTGfmpqqqtgq....glqpqpTG.ggqfapglqpqqTGfqeqaqqglqPqaTG 74 
                  q++qqqq+q+q   +p+ pqpTGf++q+ + q    ++q+qpTG +++++p lq+q TGf  +++q+ q  +TG
  CCE30901.1  35 QQQQQQQQQQPQqqpSPFAPQPTGFGQQPLQPQytafPMQSQPTGlPPPSQP-LQQQYTGF--SGAQPQQSYQTG 106
                 3333333333334588*************99999***********9999999.********..444444444465 PP

  == domain 2  score: -8.5 bits;  conditional E-value: 3
     DUF1720   2 qpqq...tGfqppqqqqpqqq.qplqpqpTGfmpqqqtgq..glqpqpTGggqfap...........glqpqqTGf 60 
                 qpqq   tG  pp++  p q  q+ q+q+   ++++ ++q     +qpTG++++ p           +++pq+TGf
  CCE30901.1  98 QPQQsyqTGAVPPMPSIPTQYqQQYQQQQQQQLQPPLPSQpaFQISQPTGFPSVSPapssnplppppSMKPQPTGF 173
                 6666666888877777666664333333333333333333544447888855555566666666677777777777 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 3.4e-05
     DUF1720  11 pqqqqpqqq....qplqpqpTGfmpqqqtgq....glqpqpTGggqfapglqpqqTGfqeqaqqglqPqaTG 74 
                 p   q+q+q    q lq+q TGf +qq ++      +q+q+TG   f +  +pq+TG+ + + +++ P +TG
  CCE30901.1 332 PAAIQQQPQpsssQLLQSQMTGFPGQQANFGgqpqAFQAQQTG---FNGMQNPQPTGY-QGPRPPMPPMPTG 399
                 444433333445589************998899*9********...444447******.8888999999999 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 2.2e-06
     DUF1720   8 fqppqqqqpqqq.qplqpqpTGfmpqqqtgq...glqpqpTG.ggqfapglqpqqTGf..qeqaqqglqPqa 72 
                 +q pq++++q + +p+ p pTG+++ +  g+   +l++qpTG +gq+   +++   G+  + + q++++Pq+
  CCE30901.1 378 MQNPQPTGYQGPrPPMPPMPTGYGQRPNDGTmtaPLNAQPTGrPGQWGL-VNAPASGLpnIDALQARMMPQQ 448
                 55666666665556666666*****9999999**********9999998.9999999999999999999997 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.23
     DUF1720  38 glqpqpTG 45 
                  l pq+TG
  CCE30901.1 588 ALLPQKTG 595
                 56666666 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 1.1
     DUF1720  44 TG.ggqfap.........glqpqqTG 59 
                 TG gg ++           +++q+T+
  CCE30901.1 785 TGpGGAITEsdrlkakakAMMQQRTA 810
                 44333333355555555566666665 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 1.6
     DUF1720   23 qpqpTGfmpqq 33  
                   p++TG  +++
  CCE30901.1 1046 APTRTGTRAPP 1056
                  34444443333 PP

  == domain 8  score: -2.2 bits;  conditional E-value: 0.99
     DUF1720   38 glqpqpTG.ggqfap 51  
                   + + +TG  + +ap
  CCE30901.1 1261 KMRAASTGqSQDSAP 1275
                  788888884444444 PP

  == domain 9  score: -8.0 bits;  conditional E-value: 3
     DUF1720   15 qpqqqqplqpqpTGfmpqqqtgq..........glqpqpTG 45  
                   p++++p+ p  TG  p+++++           +  p p G
  CCE30901.1 1426 PPPPPPPMPP--TGAAPPPPPMPgagappppppPPPPPPSG 1464
                  2222223333..66666655544444444444344444444 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.048   2.8e+02      42      70 ..     245     273 ..     206     274 .. 0.74
   2 !   12.1   0.0   3.4e-05       0.2       7      70 ..     481     536 ..     475     537 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.048
   EF-hand_7  42 sdeelellfkefDtdkdGvisfdEFlkly 70 
                 + e l +++   Dt++ G++ f EF  ++
  CCE30901.1 245 DGETLSHIWTLADTTRAGQLYFPEFALAM 273
                 336678999999*************8766 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.4e-05
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                  F++ D  g gy+  ++   +++++ q    g +++d  le+++   D+ + G++++dEF  ++
  CCE30901.1 481 LFRAWDGFGKGYIGGDQ---AIEIFGQ---SGLEKPD--LERVWTLSDHGNKGRLDLDEFAVAM 536
                 599999***********...8887653...3333344..99*******************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2416  (0.134754); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                       181  (0.0100954); expected 17.9 (0.001)
Passed Fwd filter:                        71  (0.00396006); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.14u 0.40s 00:00:02.54 Elapsed: 00:00:00.61
# Mc/sec: 7479.17
//
Query:       CCE30902.1  [L=1190]
Description: uncharacterized protein CPUR_04753 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0012   18.8  11.1     0.0017   18.3   0.1    5.7  8  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
       0.52   10.8  16.8         16    6.1   2.8    5.7  5  LRR_4     Leucine Rich repeats (2 copies)
       0.99    9.6   4.9        1.1    9.5   2.5    2.4  2  RPS31     Ribosomal protein S31e


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.2   1.3e+04       4      11 ..     548     555 ..     546     556 .. 0.83
   2 ?   -0.5   0.0      0.29   1.7e+03       7      15 ..     601     609 ..     600     610 .. 0.89
   3 !   18.3   0.1   2.8e-07    0.0017       4      23 ..     627     646 ..     624     646 .. 0.95
   4 ?   -3.1   0.0       2.1   1.2e+04       5      13 ..     684     692 ..     683     693 .. 0.83
   5 ?   -1.9   0.0       0.8   4.8e+03       5      12 ..     712     719 ..     712     719 .. 0.90
   6 ?   -3.4   0.0       2.5   1.5e+04       2      11 ..     822     831 ..     821     832 .. 0.85
   7 ?    1.4   0.0     0.072   4.3e+02       1      12 [.     853     864 ..     853     864 .. 0.93
   8 ?    0.5   0.2      0.14   8.6e+02       1      15 [.     914     928 ..     914     929 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.2
       LRR_6   4 hLteLdLs 11 
                 ++++Ld+s
  CCE30902.1 548 SIRSLDMS 555
                 789***98 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.29
       LRR_6   7 eLdLsgNdI 15 
                 +L+LsgN I
  CCE30902.1 601 SLSLSGNPI 609
                 89*****98 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 2.8e-07
       LRR_6   4 hLteLdLsgNdIgDeGaeaL 23 
                 hL+ LdLs + +gD+G+++L
  CCE30902.1 627 HLRRLDLSRCSLGDAGLSKL 646
                 9*****************98 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2.1
       LRR_6   5 LteLdLsgN 13 
                 L +L+++gN
  CCE30902.1 684 LSKLNIAGN 692
                 678****99 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 0.8
       LRR_6   5 LteLdLsg 12 
                 L+eLdLsg
  CCE30902.1 712 LQELDLSG 719
                 89****96 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 2.5
       LRR_6   2 nthLteLdLs 11 
                 n++++ L+L+
  CCE30902.1 822 NQSIECLSLA 831
                 999****997 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.072
       LRR_6   1 snthLteLdLsg 12 
                 +n++++ Ld+sg
  CCE30902.1 853 HNCTVRFLDISG 864
                 8*********96 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.14
       LRR_6   1 snthLteLdLsgNdI 15 
                 snt+L +Ld  gNd+
  CCE30902.1 914 SNTTLLTLDCEGNDF 928
                 69*******777775 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.99   5.9e+03       3      16 ..     549     560 ..     547     580 .. 0.60
   2 ?    6.1   2.8    0.0026        16       5      39 ..     601     638 ..     599     676 .. 0.73
   3 ?    5.9   0.5    0.0031        18       9      35 ..     663     694 ..     655     703 .. 0.70
   4 ?    3.8   0.3     0.014        86       2      33 ..     683     720 ..     682     731 .. 0.73
   5 ?    2.5   0.5     0.035   2.1e+02      19      43 ..     912     931 ..     889     932 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.99
                 --EEE--SS---E- CS
       LRR_4   3 LevLdLsnNqltdi 16 
                  ++Ld sn  ++ +
  CCE30902.1 549 IRSLDMSN--ISGL 560
                 45555555..4444 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0026
                 EEE--SS---E-S-..HH.....H-TT--EEE-.-S-----G CS
       LRR_4   5 vLdLsnNqltdipl..le.....klpnLkeLdLsgNnlitdl 39 
                 +L+Ls+N +   +l  l+     +  +L+ LdLs++    +l
  CCE30902.1 601 SLSLSGNPIACQDLddLAnllalNQVHLRRLDLSRC----SL 638
                 688888887766665533344455777888888887....33 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0031
                 -SS-....--E-S-.HHH-TT--EEE-.-S-- CS
       LRR_4   9 snNq....ltdipl.leklpnLkeLdLsgNnl 35 
                 snN+      +i++ l++++ L +L++ gN++
  CCE30902.1 663 SNNHgvvrFETIQSsLSGMKRLSKLNIAGNTR 694
                 566566553445554888**********9965 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.014
                 S--EEE--SS-..--E-S-HH..H-TT..--EEE-.-S CS
       LRR_4   2 nLevLdLsnNq..ltdiplle..klpn..LkeLdLsgN 33 
                 +L +L++++N   l++ +l++   + +  L+eLdLsg+
  CCE30902.1 683 RLSKLNIAGNTrfLSEESLFNeaTMHDweLQELDLSGM 720
                 68889999554467777778875588889999999997 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.035
                 HHH-TT--EEE-.-S-----GGGGX CS
       LRR_4  19 leklpnLkeLdLsgNnlitdldeLk 43 
                 +++++ L +Ld+ gN    d+d L+
  CCE30902.1 912 ISSNTTLLTLDCEGN----DFD-LS 931
                 335899*********....984.65 PP

>> RPS31  Ribosomal protein S31e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.5   0.00018       1.1       9      52 ..      35      79 ..      30      86 .. 0.86
   2 ?   -3.7   0.0       2.4   1.4e+04      54      79 ..     873     898 ..     840     900 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00018
       RPS31  9 pprv.tvalpssrlssshsetagvslscfthqfslstsssssipl 52
                 prv t al s   ss  s tag + s  t ++  +tsssss  l
  CCE30902.1 35 TPRVlTRALRSLSSSSMDSTTAGSTRSNSTRRLQKTTSSSSSSML 79
                46653889999999999********************99998655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.4
       RPS31  54 ycgrgdrktakgkrfnhsfgnarprn 79 
                   g+g  k+  g r n s+   r r 
  CCE30902.1 873 RLGQGFSKALSGLRTNDSIEHLRVRS 898
                 56888899999999999998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 7664.76
//
Query:       CCE30903.1  [L=313]
Description: probable cytochrome-b5 reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-29  100.4   0.0    9.6e-29   99.7   0.0    1.4  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    5.6e-28   97.8   0.0    8.2e-28   97.2   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    3.7e-05   23.9   0.0     0.0092   16.1   0.0    2.2  2  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.0   1.6e-32   9.6e-29       2      99 .]      69     171 ..      68     171 .. 0.94

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 1.6e-32
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC.....ETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEE CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlk.....ikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtleikG 92 
                    ++l+ek+ +s++++i+rfklps+k+ lglp+Gqh+ + ++      + ++++RsYtpis +++ G+++ll+k yp+G++s+++  l +g+ ++++G
     CCE30903.1  69 FELEEKTVISHNVAIYRFKLPSSKSILGLPIGQHISIGAPlkqpdGTVKEIVRSYTPISGDHQPGHFDLLIKSYPQGNISKHMAGLIVGQAIRVRG 164
                    689**********************************9986654445689********************************************** PP

                    EE-SEEC CS
  FAD_binding_6  93 PlGkfeY 99 
                    P+G f Y
     CCE30903.1 165 PKGAFVY 171
                    *****98 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   1.4e-31   8.2e-28       1     108 [.     181     289 ..     181     290 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 1.4e-31
                    EEEEGGGGHHHHHHHHHHHHH.CT.TCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlrailee.ak.dktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeeth 94 
                    miagGtGi+P+++++rai++  a+ dkt+v l+++n + +d+l++e+l++la++ +g +++ +v++++++gw+gg g+v+ +++ ++l+ + e++ 
     CCE30903.1 181 MIAGGTGITPMLQIIRAIVRGrADgDKTQVDLIFANVSPQDILLKEDLDALAQQDSG-IRIHYVLDNPPEGWTGGVGYVTGDMITKWLPKPAEDVK 275
                    9*******************96447********************************.99*****************************99***** PP

                    EEEECSHHHHHHHH CS
  NAD_binding_1  95 vyvCGppgMikavr 108
                    v++CGpp+Mi + +
     CCE30903.1 276 VLLCGPPPMISGLK 289
                    *********98765 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.5e-06    0.0092       6      65 ..     181     237 ..     177     244 .. 0.78
   2 !    5.6   0.0    0.0026        16     133     155 ..     270     292 ..     262     293 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.5e-06
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   6 lvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeekse 65 
                    ++agG+Gitp++ i++ +++  +    +++++ li+++ + +++  +k+ L+ l++++s 
     CCE30903.1 181 MIAGGTGITPMLQIIRAIVRGRA--DGDKTQVDLIFANVSPQDIL-LKEDLDALAQQDSG 237
                    9******************9998..88888999999988887774.34456666666555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0026
                    xxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 133 knssvgvfvCGppklvkevkklv 155
                    + + v v+ CGpp ++  +kk++
     CCE30903.1 270 PAEDVKVLLCGPPPMISGLKKTT 292
                    67899**********99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2510.33
//
Query:       CCE30904.1  [L=1203]
Description: related to tetratricopeptide repeat protein tpr1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-31  104.6  20.1    1.4e-05   24.7   0.0   11.5 11  TPR_1         Tetratricopeptide repeat
    1.2e-28   96.9  26.1     0.0022   18.0   0.0   12.9 13  TPR_2         Tetratricopeptide repeat
    7.5e-24   81.9  13.9      0.025   14.8   0.0   11.8 10  TPR_8         Tetratricopeptide repeat
    9.1e-17   59.8  16.1     0.0045   16.9   0.0   10.2  9  TPR_7         Tetratricopeptide repeat
    7.7e-16   58.2  19.7     0.0001   22.5   0.1   10.0  9  TPR_12        Tetratricopeptide repeat
    1.8e-14   53.0   6.1     0.0054   16.6   0.0   10.0 10  TPR_10        Tetratricopeptide repeat
    8.4e-13   48.6  17.4      0.066   13.7   0.1    9.7  9  TPR_19        Tetratricopeptide repeat
    1.7e-11   43.9  26.3      0.085   13.7   0.0   12.9 13  TPR_14        Tetratricopeptide repeat
    3.7e-09   36.1  12.8       0.18   11.5   0.0    8.5  8  TPR_11        TPR repeat
    3.8e-09   36.6  22.3       0.45   11.3   0.0   11.1 10  TPR_6         Tetratricopeptide repeat
    6.5e-09   35.6   3.5        9.7    6.8   0.0   10.3 11  TPR_17        Tetratricopeptide repeat
    1.9e-05   25.2  26.4       0.34   11.6   0.0    8.7  9  TPR_16        Tetratricopeptide repeat
    0.00014   22.1  15.5        1.5    9.1   0.1    7.0  7  ANAPC3        Anaphase-promoting complex, cyclosome, subunit 
     0.0028   16.2   3.8       0.32    9.4   0.2    3.2  3  Cohesin_load  Cohesin loading factor
  ------ inclusion threshold ------
       0.13   13.0   7.6        7.1    7.5   0.0    5.6  5  Sel1          Sel1 repeat
       0.79    9.9   4.3         34    4.7   0.1    4.3  5  RPN13_C       UCH-binding domain


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.012        14       4      23 ..      74      93 ..      73      96 .. 0.85
   2 !   14.6   0.1   1.9e-05     0.021       3      32 ..     222     251 ..     221     253 .. 0.91
   3 !    7.0   0.0    0.0047       5.3       6      33 ..     261     288 ..     257     289 .. 0.92
   4 ?    5.5   0.9     0.014        16       2      27 ..     375     400 ..     374     400 .. 0.95
   5 ?   -2.3   0.0       4.3   4.8e+03      14      25 ..     512     523 ..     501     528 .. 0.70
   6 !   11.0   0.0   0.00027      0.31       2      29 ..     559     586 ..     558     588 .. 0.93
   7 !    7.6   0.0    0.0031       3.5       5      25 ..     609     629 ..     607     629 .. 0.95
   8 ?   -1.8   0.5       2.8   3.2e+03       3      14 ..     718     729 ..     717     730 .. 0.87
   9 !   10.3   0.0   0.00043      0.48      17      34 .]     748     765 ..     748     765 .. 0.92
  10 !   24.7   0.0   1.2e-08   1.4e-05       4      29 ..     803     828 ..     802     830 .. 0.94
  11 !   19.9   0.0   4.2e-07   0.00047       2      33 ..     844     875 ..     843     876 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.012
                HHHHHHHHHHTT-HHHHHHH CS
       TPR_1  4 lynlGnayfklgkydeAley 23
                +   ++ay k++k d A+e 
  CCE30904.1 74 WMTVALAYAKQKKVDHAIEM 93
                556699************96 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnP 32 
                 al +++ ayf++ ky +Al +y+ +L+  P
  CCE30904.1 222 ALMGKARAYFSMHKYGDALTAYQDVLQKMP 251
                 8999*******************9999766 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0047
                 HHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   6 nlGnayfklgkydeAleyyekALelnPn 33 
                 ++G ++ +lg   +A  + e+ Le+nP+
  CCE30904.1 261 GIGCCFWQLGFKADAKVAWERSLEINPE 288
                 689999999999***************7 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekA 27 
                 + +y l+   +++g+ ++A +yy++A
  CCE30904.1 375 DGWYLLARKAHYNGDTEKANDYYRRA 400
                 78**********************99 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 4.3
                 TT-HHHHHHHHH CS
       TPR_1  14 lgkydeAleyye 25 
                  + +++A+++  
  CCE30904.1 512 AEHPEKAVQCLL 523
                 455788888875 PP

  == domain 6  score: 11.0 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALe 29 
                 + l+n+G  + + +k+++A e +e AL+
  CCE30904.1 559 QLLNNIGCFHSQAEKHEQASEMFEAALS 586
                 679***********************95 PP

  == domain 7  score: 7.6 bits;  conditional E-value: 0.0031
                 HHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyye 25 
                 +nlG  y + g  ++A+e ye
  CCE30904.1 609 FNLGRSYESRGLIEQAIEVYE 629
                 7*****************997 PP

  == domain 8  score: -1.8 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHT CS
       TPR_1   3 alynlGnayfkl 14 
                 al ++Gn+y+ +
  CCE30904.1 718 ALIGMGNLYLLQ 729
                 8999*****976 PP

  == domain 9  score: 10.3 bits;  conditional E-value: 0.00043
                 HHHHHHHHHHHHHHSTTH CS
       TPR_1  17 ydeAleyyekALelnPnn 34 
                 y +A+e++ekAL+l+ +n
  CCE30904.1 748 YGKAVEFFEKALSLDSKN 765
                 779************987 PP

  == domain 10  score: 24.7 bits;  conditional E-value: 1.2e-08
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALe 29 
                 + nlG+++ +l+++ +A+e+ye AL+
  CCE30904.1 803 YVNLGHIFTELKQFSKAIEHYEMALS 828
                 89**********************96 PP

  == domain 11  score: 19.9 bits;  conditional E-value: 4.2e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 +++ n+G        y++Ale+ +kALe+ P+
  CCE30904.1 844 RTWLNRGRSEKDIDHYNKALECAQKALEVAPD 875
                 68*****************************8 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.013        15       3      24 ..      73      94 ..      72      97 .. 0.89
   2 !   14.3   0.1   2.9e-05     0.033       3      33 ..     222     252 ..     221     253 .. 0.94
   3 !   11.0   0.0   0.00033      0.37       7      33 ..     262     288 ..     259     289 .. 0.94
   4 ?   -1.6   0.0       3.7   4.2e+03      17      30 ..     353     366 ..     349     367 .. 0.85
   5 !   11.6   1.0   0.00021      0.23       2      27 ..     375     400 ..     374     400 .. 0.96
   6 ?   -2.7   0.0         8     9e+03      12      33 ..     423     444 ..     416     445 .. 0.78
   7 ?    2.1   0.1      0.24   2.7e+02       6      30 ..     505     528 ..     500     531 .. 0.76
   8 !    7.4   0.0    0.0047       5.3       2      29 ..     559     586 ..     558     588 .. 0.93
   9 !    8.4   0.0    0.0023       2.5       5      29 ..     609     633 ..     606     638 .. 0.88
  10 !    8.6   0.0    0.0019       2.1      17      34 .]     748     765 ..     748     765 .. 0.91
  11 !   14.7   0.0   2.2e-05     0.024       3      30 ..     802     829 ..     800     832 .. 0.92
  12 !   18.0   0.0     2e-06    0.0022       3      33 ..     845     875 ..     843     876 .. 0.94
  13 ?   -2.2   0.1       5.8   6.5e+03      15      29 ..     905     919 ..     902     921 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.013
       TPR_2  3 alynlGlayyklgdyeeAleaf 24
                +++  +lay+k+++ + A+e +
  CCE30904.1 73 YWMTVALAYAKQKKVDHAIEML 94
                79999**************965 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.9e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 al+  ++ay+ + +y +Al a++ +l+  P+
  CCE30904.1 222 ALMGKARAYFSMHKYGDALTAYQDVLQKMPD 252
                 78899***********************997 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00033
       TPR_2   7 lGlayyklgdyeeAleafekAleldPn 33 
                 +G++ ++lg  ++A+ a+e++le++P+
  CCE30904.1 262 IGCCFWQLGFKADAKVAWERSLEINPE 288
                 79************************7 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 3.7
       TPR_2  17 yeeAleafekAlel 30 
                 ++ A+++  kA+++
  CCE30904.1 353 WDNAEKLAHKAIQY 366
                 899********986 PP

  == domain 5  score: 11.6 bits;  conditional E-value: 0.00021
       TPR_2   2 ealynlGlayyklgdyeeAleafekA 27 
                 +++y l++ + ++gd e+A +++++A
  CCE30904.1 375 DGWYLLARKAHYNGDTEKANDYYRRA 400
                 68**********************98 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 8
       TPR_2  12 yklgdyeeAleafekAleldPn 33 
                   ++d+ eA+  +ek ++   n
  CCE30904.1 423 VLNNDLSEAKLRLEKIIQQSRN 444
                 5678999**9999999988776 PP

  == domain 7  score: 2.1 bits;  conditional E-value: 0.24
       TPR_2   6 nlGlayyklgdyeeAleafekAlel 30 
                 nl+++y+ + ++e+A++++ ++ +l
  CCE30904.1 505 NLARLYE-AEHPEKAVQCLLQVEQL 528
                 5555555.99********9998776 PP

  == domain 8  score: 7.4 bits;  conditional E-value: 0.0047
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                 ++l+n+G+ + ++ ++e+A e fe+Al+
  CCE30904.1 559 QLLNNIGCFHSQAEKHEQASEMFEAALS 586
                 689***********************97 PP

  == domain 9  score: 8.4 bits;  conditional E-value: 0.0023
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 +nlG++y+ +g  e+A+e +e  l+
  CCE30904.1 609 FNLGRSYESRGLIEQAIEVYEGLLA 633
                 8*******************97776 PP

  == domain 10  score: 8.6 bits;  conditional E-value: 0.0019
       TPR_2  17 yeeAleafekAleldPnn 34 
                 y +A+e+fekAl+ld +n
  CCE30904.1 748 YGKAVEFFEKALSLDSKN 765
                 789***********9876 PP

  == domain 11  score: 14.7 bits;  conditional E-value: 2.2e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 ++ nlG +  +l+++ +A+e++e Al+ 
  CCE30904.1 802 VYVNLGHIFTELKQFSKAIEHYEMALSK 829
                 689**********************975 PP

  == domain 12  score: 18.0 bits;  conditional E-value: 2e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                  + n+G++    ++y++Ale+ +kAle +P+
  CCE30904.1 845 TWLNRGRSEKDIDHYNKALECAQKALEVAPD 875
                 699**************************97 PP

  == domain 13  score: -2.2 bits;  conditional E-value: 5.8
       TPR_2  15 gdyeeAleafekAle 29 
                  ++e+A+e +e+A++
  CCE30904.1 905 EQLEKAAEGLEAAIQ 919
                 68999*999999986 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.057        64       3      25 ..      73      95 ..      72      97 .. 0.90
   2 ?    1.1   0.2      0.56   6.2e+02       4      28 ..     223     247 ..     222     248 .. 0.87
   3 ?    3.0   0.0      0.14   1.5e+02       7      33 ..     262     288 ..     259     289 .. 0.94
   4 ?    6.3   0.1     0.011        13       2      28 ..     375     401 ..     374     405 .. 0.90
   5 ?    0.4   0.0      0.88   9.8e+02       2      27 ..     501     525 ..     500     531 .. 0.70
   6 !   13.3   0.0   6.8e-05     0.076       2      30 ..     559     587 ..     558     589 .. 0.93
   7 !   10.1   0.0   0.00072       0.8       5      25 ..     609     629 ..     605     634 .. 0.90
   8 !    9.9   0.0   0.00082      0.92      17      34 .]     748     765 ..     748     765 .. 0.91
   9 !   14.8   0.0   2.2e-05     0.025       2      28 ..     801     827 ..     800     828 .. 0.92
  10 !   14.2   0.0   3.3e-05     0.037       2      33 ..     844     875 ..     843     876 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.057
                HHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyye 25
                +++  +++y k+++ + A+e + 
  CCE30904.1 73 YWMTVALAYAKQKKVDHAIEMLL 95
                69999***************986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.56
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekal 28 
                 ++ ++++y+++ +y  A  +y+ +l
  CCE30904.1 223 LMGKARAYFSMHKYGDALTAYQDVL 247
                 66799****************9876 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.14
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpd 33 
                 +g++ ++lg +  Ak + e+ le++p+
  CCE30904.1 262 IGCCFWQLGFKADAKVAWERSLEINPE 288
                 89***********************97 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.011
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 + +y+l++  +  gd e+A  yy++a 
  CCE30904.1 375 DGWYLLARKAHYNGDTEKANDYYRRAD 401
                 579**********************96 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.88
                 CHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyeka 27 
                 ++++nl+++y+  +  e+A++++ ++
  CCE30904.1 501 SVLLNLARLYEA-EHPEKAVQCLLQV 525
                 677888888865.5777788777776 PP

  == domain 6  score: 13.3 bits;  conditional E-value: 6.8e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekalel 30 
                 ++++n+g+ +++ +++e+A e +e al++
  CCE30904.1 559 QLLNNIGCFHSQAEKHEQASEMFEAALSA 587
                 6899**********************985 PP

  == domain 7  score: 10.1 bits;  conditional E-value: 0.00072
                 HHHHHHHHHTT-HHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyye 25 
                 +nlg+ y++ g +e+A+e+ye
  CCE30904.1 609 FNLGRSYESRGLIEQAIEVYE 629
                 8*******************9 PP

  == domain 8  score: 9.9 bits;  conditional E-value: 0.00082
                 HHHHHHHHHHHHHHHHH. CS
       TPR_8  17 yeeAkeyyekaleldpdn 34 
                 y +A+e++ekal+ld +n
  CCE30904.1 748 YGKAVEFFEKALSLDSKN 765
                 679************986 PP

  == domain 9  score: 14.8 bits;  conditional E-value: 2.2e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 ++y+nlg+i  +l+++ +A+e ye al
  CCE30904.1 801 HVYVNLGHIFTELKQFSKAIEHYEMAL 827
                 68*********************9777 PP

  == domain 10  score: 14.2 bits;  conditional E-value: 3.3e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 + ++n g+  ++   y++A e+ +kale +pd
  CCE30904.1 844 RTWLNRGRSEKDIDHYNKALECAQKALEVAPD 875
                 78*****************************8 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.42   4.7e+02       5      26 ..     226     247 ..     222     256 .. 0.84
   2 ?    0.6   0.1      0.66   7.4e+02      12      24 ..     387     399 ..     377     431 .. 0.81
   3 !    9.3   0.0    0.0011       1.3       2      32 ..     503     534 ..     502     541 .. 0.89
   4 !   10.2   0.0   0.00056      0.62       2      28 ..     561     587 ..     560     596 .. 0.86
   5 !   15.8   0.1   8.9e-06      0.01       3      34 ..     609     640 ..     607     642 .. 0.90
   6 ?    3.3   0.0     0.091     1e+02      16      29 ..     749     762 ..     748     770 .. 0.81
   7 !   16.9   0.0     4e-06    0.0045       2      29 ..     803     828 ..     802     838 .. 0.86
   8 ?    1.8   0.1      0.26     3e+02      13      29 ..     857     873 ..     842     877 .. 0.59
   9 ?   -2.9   0.1       8.8   9.8e+03      15      29 ..    1118    1132 ..    1117    1139 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.42
       TPR_7   5 LarlysrlGdyeeAielyeqsL 26 
                  ar+y+++ +y +A++ y+ +L
  CCE30904.1 226 KARAYFSMHKYGDALTAYQDVL 247
                 59****************9876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.66
       TPR_7  12 lGdyeeAielyeq 24 
                  Gd+e+A ++y++
  CCE30904.1 387 NGDTEKANDYYRR 399
                 69*********99 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0011
       TPR_7   2 LlnLarlysrlGdyeeAielyeq..sLaltkdp 32 
                 LlnLarly++  + e+A++++ q  +L+l+  p
  CCE30904.1 503 LLNLARLYEA-EHPEKAVQCLLQveQLELDQIP 534
                 9*********.************9999998665 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00056
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLal 28 
                 L+n++  +s+  ++e+A e +e++L  
  CCE30904.1 561 LNNIGCFHSQAEKHEQASEMFEAALSA 587
                 8**********************8855 PP

  == domain 5  score: 15.8 bits;  conditional E-value: 8.9e-06
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 +nL+r y+++G  e+Aie+ye +La ++d +d
  CCE30904.1 609 FNLGRSYESRGLIEQAIEVYEGLLARHEDYTD 640
                 69********************9998888766 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.091
       TPR_7  16 eeAielyeqsLalt 29 
                  +A+e++e++L l+
  CCE30904.1 749 GKAVEFFEKALSLD 762
                 59*******77766 PP

  == domain 7  score: 16.9 bits;  conditional E-value: 4e-06
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLalt 29 
                 ++nL++++ +l ++++Aie+ye   al 
  CCE30904.1 803 YVNLGHIFTELKQFSKAIEHYEM--ALS 828
                 89*********************..655 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.26
       TPR_7  13 GdyeeAielyeqsLalt 29 
                  +y +A+e+ +++L+++
  CCE30904.1 857 DHYNKALECAQKALEVA 873
                 46777777777755544 PP

  == domain 9  score: -2.9 bits;  conditional E-value: 8.8
       TPR_7   15 yeeAielyeqsLalt 29  
                   ++A+e  e+sL+ +
  CCE30904.1 1118 NDDALERAERSLERD 1132
                  688999889976644 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1         2   2.3e+03       8      26 ..      76      94 ..      68      96 .. 0.65
   2 ?    5.2   0.0     0.022        25      47      73 ..     222     248 ..     199     252 .. 0.76
   3 ?    5.9   0.3     0.014        16      18      71 ..     352     400 ..     344     440 .. 0.86
   4 !    7.3   0.0    0.0052       5.8      44      71 ..     499     525 ..     469     528 .. 0.75
   5 !   17.7   0.2   2.8e-06    0.0032       5      76 ..     560     636 ..     558     637 .. 0.86
   6 ?    1.2   0.0       0.4   4.5e+02      20      33 ..     749     762 ..     748     779 .. 0.64
   7 !   12.3   0.0   0.00014      0.16      41      72 ..     801     827 ..     764     829 .. 0.69
   8 !   22.5   0.1   9.3e-08    0.0001       5      76 ..     802     874 ..     798     875 .. 0.94
   9 ?   -0.0   0.1         1   1.1e+03      61      74 ..    1118    1131 ..    1114    1140 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2
      TPR_12  8 nlaavlrrlgrydeAlell 26
                 +a++++++++ d A+e+l
  CCE30904.1 76 TVALAYAKQKKVDHAIEML 94
                4777777777777777776 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.022
      TPR_12  47 tlrnLgrlyralgryeeAlelleeala 73 
                 +l + +r+y+ + +y +Al +++++l+
  CCE30904.1 222 ALMGKARAYFSMHKYGDALTAYQDVLQ 248
                 556668888888888888888888875 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.014
      TPR_12  18 rydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                  +d A++l +ka++       + ++ ++   + L+r  ++ g++e+A +++++a
  CCE30904.1 352 SWDNAEKLAHKAIQYT-----DVNAIASDGWYLLARKAHYNGDTEKANDYYRRA 400
                 5778888888885555.....56677777788999999999*********9998 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0052
      TPR_12  44 tattlrnLgrlyralgryeeAlelleea 71 
                  a++l nL+rly +++++e+A++ l ++
  CCE30904.1 499 DASVLLNLARLY-EAEHPEKAVQCLLQV 525
                 5899*******9.777*******99886 PP

  == domain 5  score: 17.7 bits;  conditional E-value: 2.8e-06
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpd.....hpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +lnn++ ++ +++++++A e++e+al ++ r+ + d      +l++t+ +nLgr y+ +g  e+A+e +e  la+ e
  CCE30904.1 560 LLNNIGCFHSQAEKHEQASEMFEAALSACLRIGERDpsmdtDALVSTISFNLGRSYESRGLIEQAIEVYEGLLARHE 636
                 688999999********************999764333333789*************************98888765 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.4
      TPR_12  20 deAlellekaleia 33 
                  +A e++ekal + 
  CCE30904.1 749 GKAVEFFEKALSLD 762
                 45566666666555 PP

  == domain 7  score: 12.3 bits;  conditional E-value: 0.00014
      TPR_12  41 hpltattlrnLgrlyralgryeeAlelleeal 72 
                 h     ++ nLg ++ +l+++ +A+e++e al
  CCE30904.1 801 H-----VYVNLGHIFTELKQFSKAIEHYEMAL 827
                 3.....77888888888888888888888887 PP

  == domain 8  score: 22.5 bits;  conditional E-value: 9.3e-08
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdh.pltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +++nl+++ ++l+++ +A+e++e al    ++ +p+  +++ +t  n gr     ++y +Ale  ++al++a+
  CCE30904.1 802 VYVNLGHIFTELKQFSKAIEHYEMALSKEGKANDPNIlACLGRTWLNRGRSEKDIDHYNKALECAQKALEVAP 874
                 799**************************9998888789999****************************986 PP

  == domain 9  score: -0.0 bits;  conditional E-value: 1
      TPR_12   61 yeeAlelleealai 74  
                   ++Ale+ e++l++
  CCE30904.1 1118 NDDALERAERSLER 1131
                  45555555555554 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.3   1.5e+03       9      25 ..      78      94 ..      76      96 .. 0.88
   2 ?    3.9   0.0     0.046        51       9      30 ..     227     248 ..     222     258 .. 0.92
   3 ?    1.6   0.0      0.24   2.7e+02      14      30 ..     349     365 ..     339     367 .. 0.85
   4 ?    0.9   0.1      0.41   4.6e+02      10      31 ..     501     521 ..     500     525 .. 0.64
   5 !   16.6   0.0   4.8e-06    0.0054       5      39 ..     561     595 ..     559     598 .. 0.91
   6 ?    4.1   0.0     0.041        46       7      32 ..     610     635 ..     606     637 .. 0.59
   7 ?   -1.2   0.0       1.9   2.1e+03      18      30 ..     748     760 ..     747     764 .. 0.86
   8 ?    5.3   0.0     0.016        18       5      30 ..     803     828 ..     801     833 .. 0.93
   9 !   10.1   0.0    0.0005      0.56       5      37 ..     839     871 ..     837     877 .. 0.89
  10 ?   -2.3   0.1       4.3   4.8e+03      27      38 ..    1120    1131 ..    1117    1132 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.3
      TPR_10  9 analrqrgrydeAeall 25
                a a+ ++++ d A ++l
  CCE30904.1 78 ALAYAKQKKVDHAIEML 94
                899**********9987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.046
      TPR_10   9 analrqrgrydeAealleeala 30 
                 a+a++++ +y +A+  ++++l+
  CCE30904.1 227 ARAYFSMHKYGDALTAYQDVLQ 248
                 89******************98 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.24
      TPR_10  14 qrgrydeAealleeala 30 
                 +r+ +d Ae+l+++a++
  CCE30904.1 349 SRKSWDNAEKLAHKAIQ 365
                 68889**********97 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.41
      TPR_10  10 nalrqrgrydeAealleealai 31 
                  +l ++ r+ eAe + e+a+++
  CCE30904.1 501 SVLLNLARLYEAEHP-EKAVQC 521
                 455566666677777.777776 PP

  == domain 5  score: 16.6 bits;  conditional E-value: 4.8e-06
      TPR_10   5 lnNLanalrqrgrydeAealleealairrrllGpd 39 
                 lnN+++ ++q  ++++A +++e al+++ r+ ++d
  CCE30904.1 561 LNNIGCFHSQAEKHEQASEMFEAALSACLRIGERD 595
                 8*************************998887666 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.041
      TPR_10   7 NLanalrqrgrydeAealleealair 32 
                 NL++ + +rg  ++A + +e  la++
  CCE30904.1 610 NLGRSYESRGLIEQAIEVYEGLLARH 635
                 55666666666666665555555555 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 1.9
      TPR_10  18 ydeAealleeala 30 
                 y +A++++e+al+
  CCE30904.1 748 YGKAVEFFEKALS 760
                 5689*******97 PP

  == domain 8  score: 5.3 bits;  conditional E-value: 0.016
      TPR_10   5 lnNLanalrqrgrydeAealleeala 30 
                 + NL+++ ++++++ +A +++e al+
  CCE30904.1 803 YVNLGHIFTELKQFSKAIEHYEMALS 828
                 77********************9996 PP

  == domain 9  score: 10.1 bits;  conditional E-value: 0.0005
      TPR_10   5 lnNLanalrqrgrydeAealleealairrrllG 37 
                 l  L+++  +rgr ++  +++ +al++ +++l+
  CCE30904.1 839 LACLGRTWLNRGRSEKDIDHYNKALECAQKALE 871
                 778*****************************8 PP

  == domain 10  score: -2.3 bits;  conditional E-value: 4.3
      TPR_10   27 ealairrrllGp 38  
                  +al++ +r l++
  CCE30904.1 1120 DALERAERSLER 1131
                  566677766665 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.2   2.5e+03      32      50 ..      78      96 ..      67     102 .. 0.85
   2 !    6.9   0.1    0.0077       8.7       9      57 ..     203     252 ..     201     257 .. 0.83
   3 !   11.5   0.0   0.00028      0.32       4      62 ..     233     292 ..     230     296 .. 0.91
   4 !   13.7   0.1   5.9e-05     0.066       3      60 ..     386     447 ..     384     453 .. 0.89
   5 ?    3.2   0.1      0.11   1.2e+02       8      52 ..     476     526 ..     471     535 .. 0.74
   6 ?    4.8   0.1     0.036        40      30      58 ..     610     638 ..     570     650 .. 0.51
   7 ?   -2.9   0.1       8.9   9.9e+03      20      38 ..     711     729 ..     703     731 .. 0.76
   8 !   13.1   0.0   9.1e-05       0.1       7      57 ..     748     799 ..     748     806 .. 0.85
   9 ?    3.8   0.1     0.072        81       5      42 ..     814     853 ..     811     880 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.2
      TPR_19 32 AeallalgqldeAealLda 50
                A a+ +++ +d A+++L +
  CCE30904.1 78 ALAYAKQKKVDHAIEMLLR 96
                7799***********9965 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0077
      TPR_19   9 eAlalleqalqedpk.naearllLAeallalgqldeAealLdalpeedpd 57 
                  A++ +  al  + + n  a+++ A+a++++  + +A  + ++++++ pd
  CCE30904.1 203 TAVKSFDDALRVSQGkNMLALMGKARAYFSMHKYGDALTAYQDVLQKMPD 252
                 688888888888666588888899**************999999998888 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00028
      TPR_19   4 egdyaeAlalleqalqedpk..naearllLAeallalgqldeAealLdalpeedpddarya 62 
                 + +y +Al +++ +lq+ p+  +++ r++   + ++lg  ++A+ + ++ +e +p  + +a
  CCE30904.1 233 MHKYGDALTAYQDVLQKMPDlvDPDPRIGIGCCFWQLGFKADAKVAWERSLEINPE-SKVA 292
                 779*******************************************9999999998.6555 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 5.9e-05
      TPR_19   3 aegdyaeAlalleqalqe....dpknaearllLAeallalgqldeAealLdalpeedpddar 60 
                 ++gd + A +++++a ++    d +++ a+ + A++ + +++l eA+  L+++ ++ +++++
  CCE30904.1 386 YNGDTEKANDYYRRADDArggtDTGYLPAKFGVAQLSVLNNDLSEAKLRLEKIIQQSRNHEA 447
                 68************98776666777********************************99755 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.11
      TPR_19   8 aeAlalleqalqe..dpk.....naearllLAeallalgqldeAealLdalp 52 
                   A+ +le + ++  dpk     +a ++l+LA+++ ++ ++++A ++L ++ 
  CCE30904.1 476 KKAVTYLEGVRSAwkDPKktmspDASVLLNLARLY-EAEHPEKAVQCLLQVE 526
                 6677888887666455557777799999999**98.5678899998887765 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.036
      TPR_19  30 lLAeallalgqldeAealLdalpeedpdd 58 
                 +L + + + g +++A+++ + l++   d 
  CCE30904.1 610 NLGRSYESRGLIEQAIEVYEGLLARHEDY 638
                 66666666666666666666666665552 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 8.9
      TPR_19  20 edpknaearllLAeallal 38 
                 +d ++ +a++++ +++l +
  CCE30904.1 711 YDKHDRYALIGMGNLYLLQ 729
                 3788999999999999966 PP

  == domain 8  score: 13.1 bits;  conditional E-value: 9.1e-05
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallal.gqldeAealLdalpeedpd 57 
                 y  A++++e+al+ d kna+a+ + A+al++  ++++    +L+++ e  +d
  CCE30904.1 748 YGKAVEFFEKALSLDSKNAYAAQGVAIALVEDkKDYKTGLSILNKVRETVRD 799
                 789**************************99877787777777777776666 PP

  == domain 9  score: 3.8 bits;  conditional E-value: 0.072
      TPR_19   5 gdyaeAlalleqalqedpk..naearllLAeallalgqld 42 
                 +++  A++++e al+++ k  ++++++ L +  l+ g+ +
  CCE30904.1 814 KQFSKAIEHYEMALSKEGKanDPNILACLGRTWLNRGRSE 853
                 68899********988555449998888888888877744 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.65   7.3e+02       4      26 ..      74      96 ..      72      98 .. 0.89
   2 ?   -1.8   0.0       7.4   8.3e+03      17      30 ..     201     214 ..     196     224 .. 0.76
   3 ?    6.5   0.0     0.016        17       4      33 ..     223     252 ..     220     257 .. 0.88
   4 ?    3.1   0.0       0.2   2.3e+02      11      39 ..     266     294 ..     265     298 .. 0.90
   5 ?   -2.1   0.0       9.4   1.1e+04      11      29 ..     347     365 ..     344     369 .. 0.81
   6 ?    4.1   0.1     0.095   1.1e+02       3      30 ..     376     403 ..     374     414 .. 0.84
   7 ?   -0.4   0.1       2.5   2.8e+03      11      31 ..     509     529 ..     500     535 .. 0.72
   8 ?    4.3   0.0     0.081        91      11      31 ..     568     588 ..     567     597 .. 0.89
   9 !   13.7   0.0   7.6e-05     0.085       7      42 ..     611     646 ..     609     648 .. 0.94
  10 ?    1.2   0.1      0.78   8.7e+02      18      37 ..     749     768 ..     725     776 .. 0.82
  11 !    9.6   0.0    0.0017       1.9       6      42 ..     805     843 ..     800     845 .. 0.78
  12 ?    5.5   0.0     0.034        38       2      34 ..     837     876 ..     836     881 .. 0.78
  13 ?   -2.0   0.2       8.4   9.4e+03      17      32 ..    1118    1133 ..    1117    1138 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.65
      TPR_14  4 llalaeallalGdpdeAiallrr 26
                ++  a a++ + + d Ai++l r
  CCE30904.1 74 WMTVALAYAKQKKVDHAIEMLLR 96
                777899**************977 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 7.4
      TPR_14  17 pdeAiallrralal 30 
                 +++A++ +++al+ 
  CCE30904.1 201 LKTAVKSFDDALRV 214
                 68899999999984 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.016
      TPR_14   4 llalaeallalGdpdeAiallrralalaPd 33 
                 l+  a+a++   ++ +A+++++++l++ Pd
  CCE30904.1 223 LMGKARAYFSMHKYGDALTAYQDVLQKMPD 252
                 56679*********************9887 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.2
      TPR_14  11 llalGdpdeAiallrralalaPddaeawl 39 
                 +++lG  ++A  + +r l+ +P++ +a++
  CCE30904.1 266 FWQLGFKADAKVAWERSLEINPESKVANI 294
                 6999999****************999886 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 9.4
      TPR_14  11 llalGdpdeAiallrrala 29 
                 +  +  +d A++l+++a++
  CCE30904.1 347 FVSRKSWDNAEKLAHKAIQ 365
                 667788999*****99986 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.095
      TPR_14   3 allalaeallalGdpdeAiallrralal 30 
                  +++la+    +Gd+++A +++rra ++
  CCE30904.1 376 GWYLLARKAHYNGDTEKANDYYRRADDA 403
                 69999999999*************9665 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 2.5
      TPR_14  11 llalGdpdeAiallrralala 31 
                 l++++ p++A+++l ++ +l 
  CCE30904.1 509 LYEAEHPEKAVQCLLQVEQLE 529
                 456888999999999887765 PP

  == domain 8  score: 4.3 bits;  conditional E-value: 0.081
      TPR_14  11 llalGdpdeAiallrralala 31 
                 + +++++++A +++++al+++
  CCE30904.1 568 HSQAEKHEQASEMFEAALSAC 588
                 678999************986 PP

  == domain 9  score: 13.7 bits;  conditional E-value: 7.6e-05
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawllla 42 
                 l++ ++ +G  ++Ai++++ +la++ d  +a+++l 
  CCE30904.1 611 LGRSYESRGLIEQAIEVYEGLLARHEDYTDARTRLS 646
                 7999*****************************997 PP

  == domain 10  score: 1.2 bits;  conditional E-value: 0.78
      TPR_14  18 deAiallrralalaPddaea 37 
                  +A++ +++al+l+ ++a a
  CCE30904.1 749 GKAVEFFEKALSLDSKNAYA 768
                 57**********99988754 PP

  == domain 11  score: 9.6 bits;  conditional E-value: 0.0017
      TPR_14   6 alaeallalGdpdeAiallrralalaP..ddaeawllla 42 
                  l++++ +l ++ +Ai++++ al++    +d+ ++  l+
  CCE30904.1 805 NLGHIFTELKQFSKAIEHYEMALSKEGkaNDPNILACLG 843
                 58999*******************975335566666665 PP

  == domain 12  score: 5.5 bits;  conditional E-value: 0.034
      TPR_14   2 eallalaeallalGdpde.......AiallrralalaPdd 34 
                 + l++l++  l++G+ ++       A++++++al+ aPd+
  CCE30904.1 837 NILACLGRTWLNRGRSEKdidhynkALECAQKALEVAPDQ 876
                 6678888888888885555555555*************97 PP

  == domain 13  score: -2.0 bits;  conditional E-value: 8.4
      TPR_14   17 pdeAiallrralalaP 32  
                   d+A++ ++r l+++ 
  CCE30904.1 1118 NDDALERAERSLERDA 1133
                  5888888888888765 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.9   5.5e+03       3      15 ..      80      92 ..      78      95 .. 0.83
   2 ?    3.6   0.0     0.049        55      17      38 ..     156     177 ..     150     179 .. 0.88
   3 !    8.4   0.0    0.0015       1.7       2      29 ..     228     255 ..     227     259 .. 0.92
   4 ?    4.1   0.1     0.034        39       1      22 [.     612     633 ..     612     648 .. 0.78
   5 ?    5.7   0.1      0.01        12      10      30 ..     748     768 ..     748     774 .. 0.93
   6 !   11.5   0.0   0.00016      0.18       1      35 [.     807     843 ..     807     847 .. 0.83
   7 ?    2.5   0.0       0.1   1.2e+02      10      27 ..     859     876 ..     849     877 .. 0.80
   8 ?   -1.2   0.2       1.5   1.7e+03       5      22 ..     902     919 ..     901     920 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.9
      TPR_11  3 ayyeqGkyeeAie 15
                ay +q k + Aie
  CCE30904.1 80 AYAKQKKVDHAIE 92
                8999999999997 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.049
      TPR_11  17 YkkAlkldPdnaeayynLGlay 38 
                 ++ A +l+P+++ +++++G+++
  CCE30904.1 156 LNDAARLNPSFPPIFLARGVLL 177
                 67899**************886 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0015
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnae 29 
                 +ay++  ky +A++aY+  l+  Pd ++
  CCE30904.1 228 RAYFSMHKYGDALTAYQDVLQKMPDLVD 255
                 79******************99999776 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.034
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G+ y ++G +e+Aie+Y+  l+
  CCE30904.1 612 GRSYESRGLIEQAIEVYEGLLA 633
                 7788899**********86665 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.01
      TPR_11  10 yeeAieaYkkAlkldPdnaea 30 
                 y +A+e ++kAl ld++na a
  CCE30904.1 748 YGKAVEFFEKALSLDSKNAYA 768
                 6799**************986 PP

  == domain 6  score: 11.5 bits;  conditional E-value: 0.00016
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkl..dPdnaeayynLG 35 
                 G++++e+ ++ +Aie+Y+ Al    + ++++++ +LG
  CCE30904.1 807 GHIFTELKQFSKAIEHYEMALSKegKANDPNILACLG 843
                 99******************97533577777777776 PP

  == domain 7  score: 2.5 bits;  conditional E-value: 0.1
      TPR_11  10 yeeAieaYkkAlkldPdn 27 
                 y++A+e+ +kAl+  Pd+
  CCE30904.1 859 YNKALECAQKALEVAPDQ 876
                 889999999999988886 PP

  == domain 8  score: -1.2 bits;  conditional E-value: 1.5
      TPR_11   5 yeqGkyeeAieaYkkAlk 22 
                 ++  ++e+A e +++A++
  CCE30904.1 902 RSSEQLEKAAEGLEAAIQ 919
                 56789******9999997 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.2    0.0022       2.4       2      31 ..     222     251 ..     221     252 .. 0.89
   2 ?   -1.9   0.0       6.1   6.9e+03       6      33 .]     262     289 ..     261     289 .. 0.80
   3 ?    6.6   0.1     0.012        14       2      25 ..     376     399 ..     375     402 .. 0.88
   4 ?   -1.0   0.0       3.3   3.7e+03      10      29 ..     420     441 ..     414     444 .. 0.73
   5 ?    0.6   0.1      0.98   1.1e+03       1      26 [.     446     485 ..     446     489 .. 0.80
   6 ?    6.8   0.0     0.011        12       2      25 ..     502     524 ..     501     527 .. 0.89
   7 !   11.3   0.0    0.0004      0.45       4      30 ..     609     635 ..     608     638 .. 0.92
   8 ?   -1.8   0.3       5.9   6.6e+03       2      14 ..     718     737 ..     717     761 .. 0.46
   9 ?    3.3   0.0      0.14   1.5e+02       3      28 ..     803     828 ..     801     831 .. 0.87
  10 ?    2.8   0.0       0.2   2.2e+02       4      32 ..     847     875 ..     845     875 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHH.HHHHHHHHHHHHHHHHH-T CS
       TPR_6   2 Alyklalsyrk.lgdtdkAlealerlikeYP 31 
                 Al+  a++y++   ++ +Al+a+++++++ P
  CCE30904.1 222 ALMGKARAYFSmH-KYGDALTAYQDVLQKMP 251
                 89999******55.*************9866 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 6.1
                 HHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYPdS 33 
                 ++ ++ +lg +++A+ a+er ++  P+S
  CCE30904.1 262 IGCCFWQLGFKADAKVAWERSLEINPES 289
                 6777778776678******999999987 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.012
                 HHHHHH.HHHHHHHHHHHHHHHHHH CS
       TPR_6   2 Alykla.lsyrklgdtdkAlealer 25 
                   y+la ++++++ dt+kA ++++r
  CCE30904.1 376 GWYLLArKAHYNG-DTEKANDYYRR 399
                 5799999999999.*********98 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 3.3
                 HHH.H.HHHHHHHHHHHHHHHH CS
       TPR_6  10 yrk.l.gdtdkAlealerlike 29 
                 +++ l +d ++A+  le++i++
  CCE30904.1 420 QLSvLnNDLSEAKLRLEKIIQQ 441
                 4433426999*********986 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.98
                 HHHHHHHHHHHHH..............HHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrkl..............gdtdkAlealerl 26 
                 +A+ +l+ +y +               ++  kA+++le +
  CCE30904.1 446 EAMILLGTLYAEEifanqkadskedqsTELKKAVTYLEGV 485
                 6888899999987788888888888888999999999866 PP

  == domain 6  score: 6.8 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealer 25 
                 +l++la++y++   ++kA++ l +
  CCE30904.1 502 VLLNLARLYEAE-HPEKAVQCLLQ 524
                 69**********.*******8755 PP

  == domain 7  score: 11.3 bits;  conditional E-value: 0.0004
                 HHHHHHHHHHHHHHHHHHHHHHHHHH- CS
       TPR_6   4 yklalsyrklgdtdkAlealerlikeY 30 
                 ++l++sy++ g  ++A+e +e l+ ++
  CCE30904.1 609 FNLGRSYESRGLIEQAIEVYEGLLARH 635
                 89*******99**********999986 PP

  == domain 8  score: -1.8 bits;  conditional E-value: 5.9
                 HHHHHHHHHHHH.......H CS
       TPR_6   2 Alyklalsyrkl.......g 14 
                 Al  ++ +y+ +       +
  CCE30904.1 718 ALIGMGNLYLLQaremrrdT 737
                 55566666665434444331 PP

  == domain 9  score: 3.3 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlik 28 
                 + +l+  + +l++ +kA+e +e  ++
  CCE30904.1 803 YVNLGHIFTELKQFSKAIEHYEMALS 828
                 678999999999**********9886 PP

  == domain 10  score: 2.8 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   4 yklalsyrklgdtdkAlealerlikeYPd 32 
                 +++++s +  + + kAle  ++ ++  Pd
  CCE30904.1 847 LNRGRSEKDIDHYNKALECAQKALEVAPD 875
                 78899999988************998887 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.33   3.7e+02       4      25 ..     158     179 ..     156     192 .. 0.88
   2 ?    1.4   0.0      0.48   5.4e+02       3      24 ..     280     301 ..     278     307 .. 0.77
   3 ?    1.0   0.1      0.62     7e+02      13      32 ..     374     393 ..     363     393 .. 0.92
   4 ?    1.3   0.0      0.51   5.7e+02      11      30 ..     443     465 ..     438     470 .. 0.76
   5 ?    0.9   0.0      0.67   7.5e+02      12      24 ..     499     511 ..     496     521 .. 0.89
   6 ?   -2.2   0.0       6.6   7.4e+03      15      32 ..     560     577 ..     558     578 .. 0.88
   7 ?   -1.0   0.0       2.7     3e+03      17      34 .]     609     626 ..     605     626 .. 0.87
   8 ?    5.0   0.0     0.032        36       1      29 [.     754     783 ..     754     787 .. 0.78
   9 ?    2.2   0.0      0.25   2.9e+02      12      34 .]     799     821 ..     798     821 .. 0.89
  10 !    6.8   0.0    0.0086       9.7       9      30 ..     832     853 ..     822     856 .. 0.79
  11 ?   -1.2   0.0       3.2   3.6e+03       1       8 [.     865     872 ..     858     885 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.33
      TPR_17   4 kaleldPnnadaynnLAelllk 25 
                  a++l+P+ ++ +  +++lll 
  CCE30904.1 158 DAARLNPSFPPIFLARGVLLLL 179
                 6899**************9985 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.48
      TPR_17   3 lkaleldPnnadaynnLAelll 24 
                 +++le++P + +a  + + ++l
  CCE30904.1 280 ERSLEINPESKVANILVGLFYL 301
                 89*******9877777776666 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.62
      TPR_17  13 adaynnLAelllknGdlmtA 32 
                 +d +++LA+  + nGd+++A
  CCE30904.1 374 SDGWYLLARKAHYNGDTEKA 393
                 688*************9998 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.51
      TPR_17  11 nnadaynnLAelll...knGdlm 30 
                  n +a+ +L++l++    +++++
  CCE30904.1 443 RNHEAMILLGTLYAeeiFANQKA 465
                 6889*********9888555554 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.67
      TPR_17  12 nadaynnLAelll 24 
                 +a ++ nLA+l++
  CCE30904.1 499 DASVLLNLARLYE 511
                 7899*******97 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 6.6
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 ++nn + +++++ ++++A
  CCE30904.1 560 LLNNIGCFHSQAEKHEQA 577
                 799*******99999987 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 2.7
      TPR_17  17 nnLAelllknGdlmtArq 34 
                 +nL++ ++++G  ++A++
  CCE30904.1 609 FNLGRSYESRGLIEQAIE 626
                 8*********99888875 PP

  == domain 8  score: 5.0 bits;  conditional E-value: 0.032
      TPR_17   1 lylkaleldPnnadaynnLAell.lknGdl 29 
                 +++kal ld +na+a +  A +l + ++d+
  CCE30904.1 754 FFEKALSLDSKNAYAAQGVAIALvEDKKDY 783
                 59*************998888873344455 PP

  == domain 9  score: 2.2 bits;  conditional E-value: 0.25
      TPR_17  12 nadaynnLAelllknGdlmtArq 34 
                 ++ +y nL+ ++ +++++ +A++
  CCE30904.1 799 DFHVYVNLGHIFTELKQFSKAIE 821
                 6779*************999985 PP

  == domain 10  score: 6.8 bits;  conditional E-value: 0.0086
      TPR_17   9 dPnnadaynnLAelllknGdlm 30 
                   n+++ +  L++++l++G+++
  CCE30904.1 832 KANDPNILACLGRTWLNRGRSE 853
                 489****************997 PP

  == domain 11  score: -1.2 bits;  conditional E-value: 3.2
      TPR_17   1 lylkalel 8  
                 + +kale 
  CCE30904.1 865 CAQKALEV 872
                 34555555 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.8   3.1e+03      37      55 ..      74      92 ..      64      98 .. 0.61
   2 !    9.1   0.0    0.0018         2       3      32 ..     226     252 ..     224     289 .. 0.85
   3 ?   -2.7   0.0       9.1     1e+04       7      36 ..     266     292 ..     260     303 .. 0.77
   4 !    8.6   0.9    0.0026       2.9       4      63 ..     344     403 ..     342     407 .. 0.92
   5 ?   -2.3   0.0       6.7   7.5e+03      16      46 ..     478     511 ..     474     523 .. 0.56
   6 ?   -1.1   0.1       2.8   3.2e+03       9      24 ..     570     585 ..     568     587 .. 0.87
   7 !   11.6   0.0    0.0003      0.34       2      43 ..     610     648 ..     609     671 .. 0.82
   8 !    7.0   0.0    0.0084       9.4       2      65 ..     805     867 ..     804     870 .. 0.91
   9 ?   -0.2   0.2       1.5   1.6e+03      12      28 ..    1117    1133 ..    1117    1137 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.8
      TPR_16 37 llllgdaalrqgrlaeAaa 55
                ++  ++a+++q+ ++ A++
  CCE30904.1 74 WMTVALAYAKQKKVDHAIE 92
                5555666666665555553 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0018
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPd 32 
                 +ara++   +y dA+ a++ +l +    Pd
  CCE30904.1 226 KARAYFSMHKYGDALTAYQDVLQKM---PD 252
                 79*******************9887...55 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 9.1
      TPR_16   7 alragdyddAaaaleaalkrdpssPdaaeA 36 
                 ++++g  +dA  a+e+ l+ +p+s +   A
  CCE30904.1 266 FWQLGFKADAKVAWERSLEINPESKV---A 292
                 58889999999999999999966655...4 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0026
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 a +++ ++ +d A+++++ a+ +  +   a + ++ll++ a  +g+ ++A ++yr+a +a
  CCE30904.1 344 AGYFVSRKSWDNAEKLAHKAIQYTDVNAIASDGWYLLARKAHYNGDTEKANDYYRRADDA 403
                 778899999***************99999***************************9765 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 6.7
      TPR_16  16 AaaaleaalkrdpssPd..aaeAllllgdaal.r 46 
                 A+ +le ++ +++++     ++A+ ll++a+l +
  CCE30904.1 478 AVTYLEGVRSAWKDPKKtmSPDASVLLNLARLyE 511
                 5666666666664444466455555555554433 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 2.8
      TPR_16   9 ragdyddAaaaleaal 24 
                 +a + ++A +++eaal
  CCE30904.1 570 QAEKHEQASEMFEAAL 585
                 68899**********9 PP

  == domain 7  score: 11.6 bits;  conditional E-value: 0.0003
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgda 43 
                 +l+r++  +g  ++A++++e +l+r+    d  +A+  l  +
  CCE30904.1 610 NLGRSYESRGLIEQAIEVYEGLLARH---EDYTDARTRLSYI 648
                 89************************...9999998877665 PP

  == domain 8  score: 7.0 bits;  conditional E-value: 0.0084
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 +l++++ +++++ +A++ +e al + ++   ++  l  lg+ +l +gr ++ ++ y++al++a 
  CCE30904.1 805 NLGHIFTELKQFSKAIEHYEMALSKEGKAN-DPNILACLGRTWLNRGRSEKDIDHYNKALECAQ 867
                 689999999*****************6665.8****************************9986 PP

  == domain 9  score: -0.2 bits;  conditional E-value: 1.5
      TPR_16   12 dyddAaaaleaalkrdp 28  
                  d ddA++++e+ l+rd+
  CCE30904.1 1117 DNDDALERAERSLERDA 1133
                  679**********9995 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.029        32      19      49 ..      65      97 ..      58     119 .. 0.78
   2 !    8.1   0.0    0.0028       3.1      52      80 ..     216     244 ..     202     246 .. 0.82
   3 ?    3.8   0.1     0.058        65       3      63 ..     351     414 ..     349     422 .. 0.76
   4 ?   -0.3   0.1       1.1   1.3e+03       2      33 ..     425     455 ..     424     467 .. 0.83
   5 ?   -0.8   0.0       1.6   1.8e+03       6      49 ..     476     525 ..     471     532 .. 0.69
   6 ?   -1.3   0.0       2.4   2.7e+03      28      49 ..     610     631 ..     570     646 .. 0.52
   7 !    9.1   0.1    0.0014       1.5       5      80 ..     748     824 ..     746     826 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.029
                HH--HHHHHHH..HHHHHHTT-HHHHHHHHHCT CS
      ANAPC3 19 etespedayll..AlclylngqykrAyellrka 49
                e+e +  +y+   Al++ ++++ + A+e l + 
  CCE30904.1 65 ENEKAAKTYWMtvALAYAKQKKVDHAIEMLLRG 97
                455566688866799999999999999988765 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0028
                 HHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  52 nskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 ++k++ +++ +A++++ ++ky +A++a++
  CCE30904.1 216 QGKNMLALMGKARAYFSMHKYGDALTAYQ 244
                 5568899999****************987 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.058
                 T-HHHHHHHHHHHH....HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHH CS
      ANAPC3   3 nnyknAiflaerlla...aetespedayllAlclylngqykrAyellrkaklnskslgcrylfA 63 
                 + ++nA+ la ++ +    ++  ++  yllA     ng+ ++A +++r+a+ +       yl A
  CCE30904.1 351 KSWDNAEKLAHKAIQytdVNAIASDGWYLLARKAHYNGDTEKANDYYRRADDARGGTDTGYLPA 414
                 6799**********6432333344449999999999*************966666666666655 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.1
                 TT-HHHHHHHHHHHH.HHH--HHHHHHHHHHH CS
      ANAPC3   2 qnnyknAiflaerllaaetespedayllAlcl 33 
                 +n++ +A + +e++  ++++++e+  ll+  +
  CCE30904.1 425 NNDLSEAKLRLEKII-QQSRNHEAMILLGTLY 455
                 577888999999999.9999999998887766 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1.6
                 HHHHHHHHHHH......HHH--HHHHHHHHHH.HHHTT-HHHHHHHHHCT CS
      ANAPC3   6 knAiflaerll.....aaetespedayllAlc.lylngqykrAyellrka 49 
                 k+A+ ++e +       ++t sp+++ ll l+ ly+++  ++A + l + 
  CCE30904.1 476 KKAVTYLEGVRsawkdPKKTMSPDASVLLNLArLYEAEHPEKAVQCLLQV 525
                 66666666666444333778888888888665578888888888888776 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 2.4
                 HHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  28 llAlclylngqykrAyellrka 49 
                  l+ ++ ++g  ++A+e+++ +
  CCE30904.1 610 NLGRSYESRGLIEQAIEVYEGL 631
                 3566666666666666666554 PP

  == domain 7  score: 9.1 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-.HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3   5 yknAiflaerllaaetespedayllAlclylngq.ykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 y +A+ ++e++l+ +++++++a   A +l ++++ yk+ + +l+k ++  ++  + + +++   +Lk++ +Ai ++e
  CCE30904.1 748 YGKAVEFFEKALSLDSKNAYAAQGVAIALVEDKKdYKTGLSILNKVRETVRDFHVYVNLGHIFTELKQFSKAIEHYE 824
                 678999******999*******99*******9988***********99999999999999*************9987 PP

>> Cohesin_load  Cohesin loading factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0057       6.4     372     428 ..     349     422 ..     346     477 .. 0.77
   2 ?    0.7   0.0      0.13   1.4e+02     424     462 ..     702     751 ..     614     799 .. 0.84
   3 !    9.4   0.2   0.00029      0.32     413     516 ..     810     911 ..     772     976 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0057
  Cohesin_load 372 vlknwkkankeleeletasnkleskllkelaplllyLeglyaqskgdlkaAlaqyk.......................e 428
                   ++k w++a+k+  +++++        +++ a+  +yL +  a+++gd ++A ++y+                       +
    CCE30904.1 349 SRKSWDNAEKLAHKAIQYTD------VNAIASDGWYLLARKAHYNGDTEKANDYYRraddarggtdtgylpakfgvaqlS 422
                   67889999999998888884......78999999*********************9776666666666666666555551 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.13
  Cohesin_load 424 aqyketaarkskerelyilsllNlviIlesevseddke...........l 462
                   ++yk t+++ +k++  +++   Nl+++  +e+++d+++           +
    CCE30904.1 702 RHYKHTLQNYDKHDRYALIGMGNLYLLQAREMRRDTDQdrqkrsivygkA 751
                   5788******************************9999777766665552 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00029
  Cohesin_load 413 aqskgdlkaAlaqyketaarkskerelyilsllNlviIlesevseddkelnkllsqleplcsnspnknislanall..lattslfepisineekssl 507
                   +    ++ +A ++y  ++++++k ++  il+ l + ++ +   ++d ++ nk l+  ++ ++  p++ +   n+ +  +++++ ++++    e++  
    CCE30904.1 810 FTELKQFSKAIEHYEMALSKEGKANDPNILACLGRTWLNRGRSEKDIDHYNKALECAQKALEVAPDQVFNKFNVAFvqIQLVTMIQNL---PENRRS 903
                   555578999*****999*******************************************************9998677777777777...666666 PP

  Cohesin_load 508 lealkaaka 516
                   +e+l++a a
    CCE30904.1 904 SEQLEKA-A 911
                   6666666.2 PP

>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3       1.5   1.7e+03      22      33 ..     389     400 ..     376     403 .. 0.81
   2 ?   -0.8   0.0       2.6   2.9e+03       2      11 ..     446     455 ..     445     458 .. 0.87
   3 ?    7.5   0.0    0.0064       7.1       3      37 ..     718     762 ..     716     763 .. 0.69
   4 ?    2.8   0.0      0.18     2e+02      23      35 ..     816     828 ..     807     830 .. 0.85
   5 ?    0.8   0.0      0.79   8.8e+02      16      34 ..     850     870 ..     842     871 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.5
        Sel1  22 DpekAiewyekA 33 
                 D ekA  +y++A
  CCE30904.1 389 DTEKANDYYRRA 400
                 8999******99 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.6
        Sel1   2 eAmyrLGmfy 11 
                 eAm  LG++y
  CCE30904.1 446 EAMILLGTLY 455
                 8******998 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0064
        Sel1   3 AmyrLGmfylylnGl...gvpkD.......pekAiewyekAAeqG 37 
                 A+  +G +yl++++    ++++D       + kA+e++ekA +++
  CCE30904.1 718 ALIGMGNLYLLQAREmrrDTDQDrqkrsivYGKAVEFFEKALSLD 762
                 667778777777777777555543333333889********9987 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.18
        Sel1  23 pekAiewyekAAe 35 
                  +kAie+ye+A +
  CCE30904.1 816 FSKAIEHYEMALS 828
                 68*********76 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.79
        Sel1  16 GlgvpkD...pekAiewyekAA 34 
                 G+  +kD   ++kA+e+ +kA 
  CCE30904.1 850 GR-SEKDidhYNKALECAQKAL 870
                 54.456544799********96 PP

>> RPN13_C  UCH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.7     2e+03      12      40 ..      41      70 ..      35      73 .. 0.78
   2 ?    2.4   0.0      0.15   1.7e+02      67      91 ..     201     225 ..     197     244 .. 0.80
   3 ?    4.7   0.1      0.03        34      17      50 ..     526     559 ..     509     592 .. 0.77
   4 ?   -2.6   0.0       5.3     6e+03      66      82 ..     815     831 ..     814     839 .. 0.84
   5 ?   -0.8   0.1       1.5   1.7e+03      45      80 ..     895     920 ..     889     928 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.7
     RPN13_C 12 aaaqepevsLsdil.tpealspllsdpevv 40
                ++ +  e++L+d+l +p++l +l++++++ 
  CCE30904.1 41 QDDEAVEIDLEDLLdDPTELCTLFENEKAA 70
                4445899*******8899999999888765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.15
     RPN13_C  67 frqalsslsqALqsgqlgpvlsqlg 91 
                 ++ a++s++ AL+  q +++l+ +g
  CCE30904.1 201 LKTAVKSFDDALRVSQGKNMLALMG 225
                 688***********99999999887 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.03
     RPN13_C  17 pevsLsdiltpealspllsdpevveeLashLPee 50 
                 ++++L++i  +e  +++ ++ e++ +L ++LP++
  CCE30904.1 526 EQLELDQIPASERPTEITNESEIRAALRKFLPPQ 559
                 678999999999********************92 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 5.3
     RPN13_C  66 qfrqalsslsqALqsgq 82 
                 qf++a++  + AL++++
  CCE30904.1 815 QFSKAIEHYEMALSKEG 831
                 9************8743 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1.5
     RPN13_C  45 shLPeegeateeelretlrSPqfrqalsslsqALqs 80 
                 ++LPe + ++         S q+++a + l+ A+qs
  CCE30904.1 895 QNLPE-NRRS---------SEQLEKAAEGLEAAIQS 920
                 55555.3333.........34555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2266  (0.126387); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.38u 0.34s 00:00:01.72 Elapsed: 00:00:00.53
# Mc/sec: 6797.79
//
Query:       CCE30905.1  [L=623]
Description: related to Cvt pathway protein CVT20 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.9e-19   67.6   0.0    6.4e-18   64.8   0.0    2.3  2  PX           PX domain
      1e-10   41.6   9.4    1.3e-05   24.9   0.1    2.1  2  Vps5         Vps5 C terminal like
  ------ inclusion threshold ------
       0.63   10.3   4.4       0.92    9.7   1.0    2.4  3  Spore_GerAC  Spore germination B3/ GerAC like, C-terminal
        8.9    4.7  15.3       0.42    9.1   6.1    2.2  2  Macoilin     Macoilin family


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   1.4e-21   6.4e-18       6     112 ..     102     210 ..      99     211 .. 0.96
   2 ?   -1.1   0.0      0.41   1.8e+03      13      53 ..     291     337 ..     285     348 .. 0.78

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 1.4e-21
                 EEEEEEEEETTSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSS......CTTSHHHHHHHHHHHHHHHHHHHTSC CS
          PX   6 vsvleretsgskkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsv......rkkdeefiekrrkgLeeyLqrllnhp 98 
                 + ++++ +s ++ ++y++y++++++     +v+RrYs+F +L++ L+r +p+++iPp+P+k+++  +       k+d+ +i+ r+++L ++L+r+ +++
  CCE30905.1 102 IIITDAGKSLESGGRYIVYTIRTGDL----EVRRRYSEFASLREALTRLHPTLIIPPIPEKQTMADYaakptsAKQDQHMIDLRKRMLAVFLNRCRRME 196
                 5688999999**************96....**********************************989******************************** PP

                 HHHHSHHHHHHHHS CS
          PX  99 elrnsevlteFLev 112
                   r + v  +FL++
  CCE30905.1 197 AVRDDGVWWRFLDP 210
                 ***********987 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.41
                 EETTSSEEEEEEEEEETTS......SSEEEEEEEHHHHHHHHHHHHH CS
          PX  13 tsgskkhsyylyevelktg......akewtvkRrYsdFeeLhskLlr 53 
                 ++++ + +++ ye ++k+         e+  +R  s++  L ++L +
  CCE30905.1 291 SEQDLDPYFVSYEASTKEMeqllngPMEKVNRRTLSHLSALATDLCE 337
                 45677778888888888778888877777888899999999999976 PP

>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   2.9e-09   1.3e-05      16     169 ..     289     442 ..     278     461 .. 0.89
   2 !   19.2   4.6   1.6e-07   0.00071     160     232 ..     540     612 ..     535     616 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.9e-09
        Vps5  16 stkfeEqDewFedkkqeldslesqLkk.LykaiellvsqrkelasataelakslesLaslelskslsralsqlaeveerikellerqaeqdvltLgeti 113
                 +++ ++ D++F + +++  ++e+ L   ++k+     s+ + la+ + el++  +++a +e  +sl  a++++ +        +e+ a +    ++e +
  CCE30905.1 289 VYSEQDLDPYFVSYEASTKEMEQLLNGpMEKVNRRTLSHLSALATDLCELGSRFNAFALSEQAPSLGPAIERVGQAADLSYIATEELAGSLGASFAEPM 387
                 56667789*****************96599999999******************************************9999***************** PP

        Vps5 114 deylrligsvksvfeqRvklwqkwqsaeqelskkkeqleKlekaaksqqdklqqlk 169
                 +e+ ++ g vksv+  Rv    +     +el+kk++ le+le+++  +  +++q  
  CCE30905.1 388 RENAQFAGVVKSVLRYRVLKRVQQDLTAEELAKKRDLLEQLEQSEA-EARRIEQYL 442
                 *****************988888888999**************944.446776654 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.6e-07
        Vps5 160 sqqdklqqlkkeveelerkvqeaekeFeeisetikkElerFetervedfknvvekyLesaiesqkevielWet 232
                 +++d + + ++++ +le+     e++ +e se++ k+l+rF++++ +d+k+ +  y +s +e  k++ + We+
  CCE30905.1 540 TRRDTIGKTRESIGQLEQAQVASERDVKEASESVLKDLKRFQKDKEDDLKRYMLAYAKSHVEWAKKSKQQWEE 612
                 5678889999999999999999**************************************************7 PP

>> Spore_GerAC  Spore germination B3/ GerAC like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.12   5.3e+02      90     129 ..     304     343 ..     251     351 .. 0.83
   2 ?   -3.3   0.5       2.1   9.2e+03      91     115 ..     421     446 ..     402     448 .. 0.46
   3 ?    9.7   1.0    0.0002      0.92      91     152 ..     554     617 ..     514     620 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.12
                  --HHHHHHHHHHHHHHHHHHHHHHHHTT----S-HHHHHH CS
  Spore_GerAC  90 eelkelekalekeiekeieealkklqeyksDilgfgeylr 129
                     ke+e+ l+  +ek   ++l +l  + +D+ ++g +++
   CCE30905.1 304 ASTKEMEQLLNGPMEKVNRRTLSHLSALATDLCELGSRFN 343
                  4489999999999999888999*************99876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.1
                  -HHHHHHHHHHHHHHH.HHHHHHHHH CS
  Spore_GerAC  91 elkelekalekeieke.ieealkklq 115
                  +++ le+  + e e + ie++l ++q
   CCE30905.1 421 KRDLLEQLEQSEAEARrIEQYLSTSQ 446
                  23334444444444432566664444 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0002
                  -HHHHHHHHHHHHHHHHHHHHHHHH...TT----S-HHHHHHHH-HHHH.HHHGGGH..HHHH-EE CS
  Spore_GerAC  91 elkelekalekeiekeieealkklq...eyksDilgfgeylrrkhpkew.kqkkdeWkeeiknaev 152
                  +l++ + a e+ +++  e++lk l+   + k D l     +++k   ew k+ k++W+e+  +aev
   CCE30905.1 554 QLEQAQVASERDVKEASESVLKDLKrfqKDKEDDLKRYMLAYAKSHVEWaKKSKQQWEEA--RAEV 617
                  356666677888888666666555533388888888888899998889*9999999*776..6666 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.7     0.031   1.4e+02     288     375 ..     428     516 ..     384     528 .. 0.49
   2 ?    9.1   6.1   9.4e-05      0.42     463     536 ..     547     621 ..     540     623 .] 0.91

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.031
    Macoilin 288 ymenkskskrlsksessgsesellveesvkskssssssssnknskkasagsagssnssskkhsessksvtsss.....ssknskkqklpaGks 375
                   +++++++r++++ s++++ +  ++ s+++k+ss  ++  +++   + ++ ++ +  + +h + s+s++s s      s++   +k+p+G+s
  CCE30905.1 428 LEQSEAEARRIEQYLSTSQQLSPPRKRSTSQKESS-PQHR-RDTG--QEDTESIDSDFPPTHGDYSSSTPSVSqglpdRSASVSHKKGPSGNS 516
                 22333444444444222222222222222222222.2221.2222..2222334455566666666666655545555333334445555554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 9.4e-05
    Macoilin 463 kdkqtlqqlek.rLkeekearaslekqLaeekkrkkeeeetaaravalaaasrsecteslkskkreleaeikkLe 536
                 k + ++ qle+ ++ +e++ + + e+ L++ k+ +k++e+  +r + + a s  e ++  k++ +e  ae++k++
  CCE30905.1 547 KTRESIGQLEQaQVASERDVKEASESVLKDLKRFQKDKEDDLKRYMLAYAKSHVEWAKKSKQQWEEARAEVDKID 621
                 67899****985799*****************************888888888*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1323  (0.0737911); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.40
# Mc/sec: 4701.46
//
Query:       CCE30906.1  [L=394]
Description: related to mRNA guanylyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-56  189.2   0.1    8.8e-56  188.8   0.1    1.2  1  mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
    4.3e-33  114.2   0.1    7.3e-33  113.4   0.1    1.4  1  mRNA_cap_C       mRNA capping enzyme, C-terminal domain
    4.3e-08   33.0   0.0    4.3e-05   23.2   0.0    2.3  2  DNA_ligase_A_M   ATP dependent DNA ligase domain
    0.00011   22.6   0.0    0.00021   21.7   0.0    1.4  1  RNA_ligase       RNA ligase


Domain annotation for each model (and alignments):
>> mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.8   0.1     2e-59   8.8e-56       1     195 []      46     241 ..      46     241 .. 0.96

  Alignments for each domain:
  == domain 1  score: 188.8 bits;  conditional E-value: 2e-59
                      EEEE--TTHHHHHHHS-EEEEEEESSEEEEEEEEECT...EEEEEEETTS-EEEES..SST-BTTSSSSTCTSBGGSEEEEEEEEEEECTTCEE CS
  mRNA_cap_enzyme   1 qPvSlerenlekLkqkkYvvseKaDGiRylmllteee...egvylidRenevyrve..nlrfprekdkeklekvldetllDgElvidkveekkk 89 
                      qPvS+ re+le Lk+++Y+v+eK+DGiRyl++ t++e   e+ ylidR+n+++ +   nl+fp e++   ++ ++++tl+DgElv d +++ kk
       CCE30906.1  46 QPVSFAREHLEDLKKQDYYVCEKSDGIRYLLYSTSDEdggETHYLIDRKNDYWFIAnrNLHFPLENN---TQAFHTGTLIDGELVWDSLPDGKK 136
                      8*********************************999999999*********999722578999997...467********************* PP

                      EEEEEEEEEEEETTEEGTTSBHHHHHHHHHHHTHHHHHHHHHTTCCCCTTSSSEEEE--EEETTHHHHHHHHCCCCCTTSTEEEEEEEESSSB- CS
  mRNA_cap_enzyme  90 elryliyDivaingvtvaeeplskRleilkkelikprneekktglletdkepfsvrlKefilleavaklleekfikklshesDGLIfqpvkepy 183
                      e+r+l++D++ ++g +++++ l+kRl+++k+ l  p+++  k+   e + +pf v +K f l + ++  ++++++++l+h +DGLIf++ ++py
       CCE30906.1 137 EPRFLVFDCLLMDGNKLMDRTLDKRLAYFKQRLYAPYKKLFKEYPEELQFQPFFVEMKPFQLAYGIEM-MFKQVLPNLKHGNDGLIFTCRNTPY 229
                      ******************************************9999999*****************99.99*********************** PP

                      -SEEEEEEEEE- CS
  mRNA_cap_enzyme 184 vagrdsdllKwK 195
                        g+d ++lKwK
       CCE30906.1 230 RHGTDPHILKWK 241
                      ***********9 PP

>> mRNA_cap_C  mRNA capping enzyme, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.1   1.6e-36   7.3e-33       1     107 [.     245     369 ..     245     370 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 1.6e-36
                 GSEEEEEEEE.................SSS--TTS--EEEEEEEES....TEEEEEEEB---HH...HHHHHHHT-S--TTEEEEEEE-TTS-EEEEEE CS
  mRNA_cap_C   1 eNtvDFklel.................ekyedydakpkfellvleg....ekyekfaelylseeekeeweelkslneeldgkIvEcsldeekrWkllri 78 
                 eNtvD++l+l                 +++ dyd++pk+ell+++g    +kye f++ly++e+   ewe+lksln++l+ +IvEc++d+++rW+l+r+
  CCE30906.1 245 ENTVDCRLKLtfplvepneqerregitQPFIDYDNVPKAELLIYKGdsgpDKYEFFRDLYITEA---EWEMLKSLNDPLNFRIVECNQDDRGRWRLVRF 340
                 7**************************9*********************999**********99...**********************999******* PP

                 -TT-SS--BHHHHHHHHHHHHTS--HHHH CS
  mRNA_cap_C  79 RdDKsepNhisvvekvleSIednvteeeL 107
                 RdDK+e+Nh+s+v++vleSI+d+v+e++L
  CCE30906.1 341 RDDKHEANHTSTVSSVLESINDRVSEKDL 369
                 ***************************99 PP

>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0006       2.7       4      82 ..      45     128 ..      44     135 .. 0.71
   2 !   23.2   0.0   9.6e-09   4.3e-05     112     204 .]     135     241 ..     133     241 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0006
                     EEEESCHHHHHHHTTTSEEEEEEEESSEE....EEEEEETTEEEEEETTS-B-GG.GCHHHHHHHHHHBSTTESEEEEEEEEEE CS
  DNA_ligase_A_M   4 AeslksiekalkkleekafivEiKyDGeR....aqvhkegdkvklfSRrlkdita.akpelvkalkeafkkdeksvilDGElva 82 
                     A++++  ++ l+ l++++ +v +K DG R       +++g++  ++  r++d+   a  +l   l++  ++  +  ++DGElv 
      CCE30906.1  45 AQPVSFAREHLEDLKKQDYYVCEKSDGIRyllySTSDEDGGETHYLIDRKNDYWFiANRNLHFPLENNTQAFHTGTLIDGELVW 128
                     566666788999999**************6553333456666666555555555546666666666666666678999999995 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 9.6e-09
                     HSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB............--BTTTEE....E--EEEESSHHHHHHHHHHH...HHTTECEEEEEET CS
  DNA_ligase_A_M 112 eaelclfvFDiLyldgesltdeplkeRrklLeeil............kesedrve....laeslevkdveeleelleea...iseglEGlvvKnp 187
                     ++e++++vFD+L +dg++l+d++l++R ++ ++ l            +    +++    ++e++  + +  +e +++++   +++g +Gl+    
      CCE30906.1 135 KKEPRFLVFDCLLMDGNKLMDRTLDKRLAYFKQRLyapykklfkeypE----ELQfqpfFVEMKPFQLAYGIEMMFKQVlpnLKHGNDGLIFTCR 225
                     57899****************************999999999955442....4441122567777777777788888773335899999999999 PP

                     T-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 188 dskYepgkrsknwlKvK 204
                     + +Y+ g    + lK K
      CCE30906.1 226 NTPYRHGTD-PHILKWK 241
                     999999988.8888877 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.6e-08   0.00021       2     161 .]      62     241 ..      61     241 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 4.6e-08
                 EEEEEEE-SSEEEEEEEETT......EEEEETTCEBCTTTHHHHHHTHHHHHHHH...HHHHH....ECCEEEEEEEES.SS..TTSS.EEEEEEEEEE CS
  RNA_ligase   2 evvvtEKlDGtnfriylvke......vgvasRsqilpfgeekfkefkrwaaalrk...klkekla..neelilyGElighsikygglpkefyvFdifdi 89 
                  ++v+EK DG +  +y + +       +++ R++++            w  a+r+   +l+++ +  +    + GEl+ +s + g+ +  f+vFd++ +
  CCE30906.1  62 DYYVCEKSDGIRYLLYSTSDedggetHYLIDRKNDY------------WFIANRNlhfPLENNTQafHTGTLIDGELVWDSLPDGKKEPRFLVFDCLLM 148
                 588999999999999999533455555555555555............444444433366666668856699*******99988887789*******99 PP

                 E.CTT..............BECE--HHHH.HHHHHCCTB..EEEEE.SS.HHHHHCCC....H.HHHTC--EEEEEESSSSBE.TTEBSEEEEE CS
  RNA_ligase  90 r.dke..............eqrylspdev.ealakglgtvpvlyegkfl.aaeellel...ll.skgnkrEGlVikpeselyk.nkgraifKvk 161
                 + + +              ++ y +++++ +++ ++l+  p++ e+k    a  ++ +   +l + ++   Gl++ + ++ y+  ++ +i+K+k
  CCE30906.1 149 DgN-KlmdrtldkrlayfkQRLYAPYKKLfKEYPEELQFQPFFVEMKPFqLAYGIEMMfkqVLpNLKHGNDGLIFTCRNTPYRhGTDPHILKWK 241
                 954.4588899999999988899999999999999887555554544442333333335431256788899*******9999988889999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2860.12
//
Query:       CCE30907.1  [L=462]
Description: uncharacterized protein CPUR_04758 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       912  (0.0508673); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3312.99
//
Query:       CCE30908.1  [L=1504]
Description: probable SPO76 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-05   24.8   0.5      0.033   14.6   0.0    5.3  6  HEAT_2          HEAT repeats
    0.00034   20.7   2.8        9.7    6.2   0.0    5.2  4  Cnd1            non-SMC mitotic condensation complex subunit 
      0.001   19.2   1.0       0.41   11.0   0.0    4.3  4  HEAT            HEAT repeat
  ------ inclusion threshold ------
      0.018   15.5   2.3       0.12   12.9   0.0    3.7  4  HEAT_EZ         HEAT-like repeat
       0.28   11.8   3.1         15    6.2   0.0    3.2  3  Nitr_red_assoc  Conserved nitrate reductase-associated protei
        1.6    8.0  47.6      0.046   13.1  35.3    2.3  2  BUD22           BUD22


Domain annotation for each model (and alignments):
>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00019      0.56      29      58 ..     496     525 ..     483     565 .. 0.49
   2 !   14.6   0.0   1.1e-05     0.033       2      65 ..     501     589 ..     500     594 .. 0.76
   3 ?   -2.2   0.0       1.9   5.7e+03      43      61 ..     706     726 ..     703     755 .. 0.57
   4 ?    0.9   0.0      0.21   6.2e+02      11      41 ..     758     792 ..     747     804 .. 0.74
   5 ?   -1.1   0.0      0.85   2.5e+03      33      52 ..     950     970 ..     906     984 .. 0.56
   6 ?    0.9   0.0      0.21   6.1e+02      29      55 ..    1078    1104 ..    1063    1116 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
      HEAT_2  29 npealpaLvellededpavRraaaeaLgai 58 
                 + e+++ Lv+ l+d+++ vR aa++a+  +
  CCE30908.1 496 ESELVKGLVDKLNDSEEKVRLAAVKAIELF 525
                 456677777777777777777777776533 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.1e-05
      HEAT_2   2 daLlqalendpdpevrraairaLg..rignp..............ealpaLvellededpavRraaaeaLgai..........gdpealp 65 
                 + L+  l nd++++vr aa++a+   ++++               ++++ L + ++d +pavR +a   Lg++          g++++++
  CCE30908.1 501 KGLVDKL-NDSEEKVRLAAVKAIElfNFRDAilklgvtggvekegSVFASLADRCRDRKPAVRVEAMVLLGKLwavgageiadGEEAVIS 589
                 5688999.9***************55444447777777777777778***********************98755555444444455555 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.9
      HEAT_2  43 edpavRraaaeaLgaigd..p 61 
                 ++  v ++ a++L ++g+  p
  CCE30908.1 706 DEDKVKATLAKTLEWLGTffP 726
                 345677888888888874332 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.21
      HEAT_2  11 dpdpevrraairaLgrignpea...lpaLvell.e 41 
                 + ++ vrra+ + + +i++ +a   l++L++ll +
  CCE30908.1 758 SDFKTVRRAINELITKIQSGSAsvcLDTLIPLLyR 792
                 55667888888999988887666689999999854 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.85
      HEAT_2  33 lpaLvell.ededpavRraaa 52 
                 l+ L++ +  d+d+a+R   +
  CCE30908.1 950 LARLLPSVtADSDEAIRDLTI 970
                 344444443455566655554 PP

  == domain 6  score: 0.9 bits;  conditional E-value: 0.21
      HEAT_2   29 npealpaLvellededpavRraaaeaL 55  
                  +p++++ + el++d++  vR++ +e L
  CCE30908.1 1078 EPSSFNKMAELVQDSELQVRKHFVEKL 1104
                  678889999999999999999888766 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.37   1.1e+03      59      89 ..     154     184 ..     107     263 .. 0.46
   2 !    6.2   0.0    0.0032       9.7      24      50 ..     548     574 ..     530     600 .. 0.80
   3 ?    3.0   0.0     0.031        91      76     135 ..     819     881 ..     779     898 .. 0.81
   4 !    4.9   0.0    0.0082        24      38     104 ..    1057    1124 ..    1052    1171 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.37
        Cnd1  59 flselaklleDenprVvanalaalteiseks 89 
                 f+++++++l D+ +   +  +++l+ +se +
  CCE30908.1 154 FIKDILSALFDPTNPYNSQHKYVLMSLSEVK 184
                 4444444444444444444444444444443 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0032
        Cnd1  24 epLrkrLkDedpyVRktaaivvakLil 50 
                   L  r++D++p VR  a++++ kL  
  CCE30908.1 548 ASLADRCRDRKPAVRVEAMVLLGKLWA 574
                 568889999999999999999999954 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.031
        Cnd1  76 analaalteisekse....naiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeae 135
                 + a+ +l++is++++    + + +l ++ii +   a ++ +  + + il++ +sy +k +q++e
  CCE30908.1 819 TVAHQVLNDISQRNPdvfrSHAKELRREIIEQAP-ADKKSNDPAVVDILKAYSSYAKKYSQDIE 881
                 5688899999999883443445666677777777.77899999999999999999999998765 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0082
        Cnd1   38 RktaaivvakL...ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiiskl 104 
                  R  a ++++kL    + d + e   ++++a+l++D++ +V++  +  l+ ++++++  +   +++i++ +
  CCE30908.1 1057 RLMAGLMILKLctvKKYDDCLEPSSFNKMAELVQDSELQVRKHFVEKLQSYLTRGK--LRPRFHTILFLI 1124
                  66677888888764444678899999****************99999999999974..333333333333 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.055   1.6e+02       2      30 ..     371     399 ..     370     400 .. 0.86
   2 !   11.0   0.0   0.00014      0.41       5      24 ..     503     522 ..     499     525 .. 0.84
   3 ?   -0.3   0.1       0.6   1.8e+03       5      27 ..     550     572 ..     547     575 .. 0.84
   4 ?   -2.8   0.0       3.8   1.1e+04       6      18 ..    1086    1098 ..    1083    1104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.055
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaev 30 
                 +P l   ls ++ + R  A +++g+++++
  CCE30908.1 371 VPQLDAELSADNVHLRLIATETFGDMISG 399
                 67776668999***************987 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00014
                 HHHHHT-SSHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaL 24 
                 l+  l+D++ +VR aA+ka+
  CCE30908.1 503 LVDKLNDSEEKVRLAAVKAI 522
                 55669*************98 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.6
                 HHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgal 27 
                 l   ++D  p VR  A   Lg+l
  CCE30908.1 550 LADRCRDRKPAVRVEAMVLLGKL 572
                 667899*******9999999887 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3.8
                  HHHHT-SSHHHHH CS
        HEAT    6 lkllsDpspeVRe 18  
                   +l +D++ +VR+
  CCE30908.1 1086 AELVQDSELQVRK 1098
                  67889*******7 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.5   4.6e+03      24      53 ..     365     394 ..     361     396 .. 0.68
   2 ?   12.9   0.0     4e-05      0.12      21      53 ..     491     523 ..     471     525 .. 0.79
   3 ?   -1.8   0.0       1.6   4.8e+03      33      55 .]     550     572 ..     546     588 .. 0.79
   4 ?   -4.1   0.0         6   1.8e+04      27      39 ..    1156    1168 ..    1151    1171 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.5
     HEAT_EZ  24 plvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 + ++ ++p+L a L+ d+ + R  A  ++g
  CCE30908.1 365 DILQNVVPQLDAELSADNVHLRLIATETFG 394
                 455688999988886666666888877776 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4e-05
     HEAT_EZ  21 llqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 l +   +e+++ L+  Lnd++ +VR aA+ a++
  CCE30908.1 491 LSREDESELVKGLVDKLNDSEEKVRLAAVKAIE 523
                 55556789**********************986 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.6
     HEAT_EZ  33 LlalLnddsdeVRaaAagaLgnl 55 
                 L+ + +d +++VR  A   Lg+l
  CCE30908.1 550 LADRCRDRKPAVRVEAMVLLGKL 572
                 55666788888888888888876 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 6
     HEAT_EZ   27 peilpaLlalLnd 39  
                  + +l+ L+alL +
  CCE30908.1 1156 EGLLARLIALLAH 1168
                  5677888888765 PP

>> Nitr_red_assoc  Conserved nitrate reductase-associated protein (Nitr_red_assoc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0052        15      24      76 ..     727     779 ..     726     787 .. 0.89
   2 ?    4.7   0.1     0.015        45      60     114 ..     961    1017 ..     946    1034 .. 0.79
   3 ?   -3.4   0.6       4.6   1.4e+04      67      99 ..    1308    1340 ..    1290    1358 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0052
  Nitr_red_assoc  24 DtcgvklkLsqWqqlsqeerqaLvelpceteeeikayreaLqelveekageea 76 
                     D  +v+  L++  +l+ +   +Lv+ ++e e++ k+ r+a++el+++ ++ +a
      CCE30908.1 727 DPLKVRSDLQKFAKLNDRRSYQLVKYAIEPESDFKTVRRAINELITKIQSGSA 779
                     56678999*************************************99877665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.015
  Nitr_red_assoc   60 yreaLqelveekageeakeleieeepaWldeeevpeavqekaeelgvel..tleqwa 114 
                       +ea+++l+ ++  +e+++ +  + p+W +++++ e++q+k+ +l++ +  +l++ +
      CCE30908.1  961 SDEAIRDLTIKEILREVRTDADPKDPPWVNDADMDEELQAKCLALKILVnhALATEQ 1017
                      5788899999999999999999999*****************999988754555555 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.6
  Nitr_red_assoc   67 lveekageeakeleieeepaWldeeevpeavqe 99  
                        +++a +++k++  +++ + +++++v +a + 
      CCE30908.1 1308 ASAKRARTQTKTAVRDKKSKTSKNTQVKKAAKP 1340
                      333344444444444444433333333333322 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   4.3      0.12   3.5e+02     156     198 ..      15      57 ..       2     107 .. 0.46
   2 ?   13.1  35.3   1.5e-05     0.046     110     290 ..    1272    1481 ..    1238    1499 .. 0.43

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.12
       BUD22 156 kkkkkkeeeeeeesdkeeesedsed.eekeeseddeeeeeeded 198
                 +  +++ + + +++++ + +++ e+ + +e+++dd+eee+e+++
  CCE30908.1  15 EPVEEDIQMQ-QDAPETDPESGPEQeTAAEQQDDDDEEEMEQRS 57 
                 2222222222.222222222222221222222222222222222 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.5e-05
       BUD22  110 vtsrLlnsktvkevveeivesv......kkllgiek.........kkkkkeeekkkkkkkkkkkkkkeeee.......eeesdkeeesedsed.... 180 
                  +  +++  +++ e+v++i +++      k                k   +++ + k++ ++kk+k++++++       +++++++++++   +    
  CCE30908.1 1272 IAKKMYIPEEIDERVDDILRALdrkkkrK------SthelgdasaK---RARTQTKTAVRDKKSKTSKNTQvkkaakpRKQKEEASSAAV--Serrr 1357
                  44455555555555555555554432211......12234443331...22222222222222222222223333322222222222222..23242 PP

       BUD22  181 ..eekeeseddeeeeeededdedaee................deedeeaeerelaqydglla.....sddededeyneetdeesseesdssdsses. 253 
                    +   +++ ++ +e +d dde   e                +e+  e+ + e +q     +      dde  d+++ee+ ee++ee+++ ++ e+ 
  CCE30908.1 1358 sgR---AHKVSNYKERNDTDDE---EemlggvaewdgdqsdaEESGGEDADSESEQ-----SdapasGDDEAGDQEQEEEAEEAEEEAEEAEEAEEa 1443
                  221...2222222222222222...1234556677443332222222222222333.....134442444444444444444444444444444330 PP

       BUD22  254 asesesessekkkkkkkkkkkkakakkvt..sstfLPsL 290 
                  ++e+e+e++e  +++k++++ +a++k     + t L sL
  CCE30908.1 1444 IEEEEKEEKEV-PAPKRSSSRAAPSKGKGsvKPTVLQSL 1481
                  33333333333.444444444444443332345555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1947  (0.108595); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                       168  (0.00937029); expected 17.9 (0.001)
Passed Fwd filter:                        67  (0.00373696); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.77u 0.33s 00:00:02.10 Elapsed: 00:00:00.62
# Mc/sec: 7348.74
//
Query:       CCE30909.1  [L=739]
Description: related to transcription factor snf5p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-66  222.4   0.6    9.9e-65  218.6   0.6    2.3  1  SNF5      SNF5 / SMARCB1 / INI1


Domain annotation for each model (and alignments):
>> SNF5  SNF5 / SMARCB1 / INI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.6   0.6   5.5e-69   9.9e-65       1     237 []     155     381 ..     155     381 .. 0.84

  Alignments for each domain:
  == domain 1  score: 218.6 bits;  conditional E-value: 5.5e-69
        SNF5   1 qaekpetLvPiridldidkyrlrDtFlwNlhetlitpeqFaqtlveDldlpeea..avveeiskqireqleeyagvalhelasekkesatpaekkesee 97 
                 qae++e+LvP+r+++++dk++lrDtF+wNlhe+l+ +e Fa ++veD++l+  +   ++++i++q+reql+e+      ++a ++++  +p        
  CCE30909.1 155 QAEQHEELVPLRLEVEWDKVKLRDTFTWNLHERLLAVELFAAQIVEDMGLKPPNaqPIFDQIVQQMREQLNEF-----YPFAFSEEDALDP-------- 240
                 89************************************************8555559****************.....5553332222221........ PP

        SNF5  98 dtpkakiseeeekeeke.nkddelRvlikldiqigsklltDkfEWdllsplntpEeFAkqlcadlgLsgefvtaiaHaIrEqvlkykksllesgllvag 195
                             + +++ +k+de+Rvlikl+i+ig+++l+D+fEW++++p+n+pEeFA+++++dl+Lsgef+taiaH+IrEq++ ++ksl+++g     
  CCE30909.1 241 ------------ELPYSaYKNDEMRVLIKLNITIGQHTLVDQFEWEINNPNNSPEEFASNMARDLSLSGEFTTAIAHCIREQTQLFTKSLYSVGHPF-- 325
                 ............13444499***********************************************************************555555.. PP

        SNF5 196 lkkleagwrfd........................eelaeefepkleelskeelekrekerereir 237
                           d                        +++a+e++p+++els+++le++e+  +re+r
  CCE30909.1 326 ----------DgrpiedsdlvaaflqtplptvfrpQQQAKEYAPYMYELSEADLERNEMVFSREQR 381
                 ..........4444444444444444466666664446*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5206.47
//
Query:       CCE30910.1  [L=417]
Description: related to 442K curved dna-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-07   29.9   0.0    6.4e-07   29.3   0.0    1.3  1  Peptidase_M24  Metallopeptidase family M24
  ------ inclusion threshold ------
       0.31   11.1   1.9        4.9    7.3   0.0    2.8  2  SapB_1         Saposin-like type B, region 1


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   7.1e-11   6.4e-07       2     106 ..      26     143 ..      25     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 7.1e-11
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT.......TCEESSSSEEEEGGGGGSTTTBC..SSSB.....--TTEEEEEEEEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhg.......arglafppivasgenaavlhytp..ndrv.....lkegdlvlidaga 83 
                    +++ a++i++++l++v++ + pg +  e++++ ++  ++++        +   +f+  + +++ + v  ytp  +d++     +k++++++i +ga
     CCE30910.1  26 KYKTAGQISEKVLAEVAKLCVPGAKIVEICQKGDKI-MEEEVakvyrgkKVTKGFSHPTTISPASYVTPYTPltTDESeaaleIKPDEPIKIQLGA 120
                    6899******************************87.5443355666575555666669999**********763333688889************ PP

                    EETTEEEEEEEEEECSSGSHHHH CS
  Peptidase_M24  84 eydgyasDitrTvlvGkftpeqr 106
                    ++dg+ + ++ T++  + +++ +
     CCE30910.1 121 QIDGFGAIVCDTIVAREADKKDE 143
                    *************9876666544 PP

>> SapB_1  Saposin-like type B, region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00054       4.9      21      35 ..     190     204 ..     182     205 .. 0.88
   2 ?    1.9   0.5     0.027   2.4e+02      19      32 ..     373     386 ..     369     386 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00054
                 --HHHHHHHHHHHHH CS
      SapB_1  21 kTeeeIieaLekvCs 35 
                  T++++ ++LekvC+
  CCE30910.1 190 PTQAKMTAMLEKVCE 204
                 7*************7 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.027
                 SS--HHHHHHHHHH CS
      SapB_1  19 dNkTeeeIieaLek 32 
                 ++ T eeI++ Le+
  CCE30910.1 373 KKITDEEILKILEQ 386
                 468*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1131  (0.0630822); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2819.39
//
Query:       CCE30911.1  [L=1221]
Description: uncharacterized protein CPUR_04762 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-14   53.1  19.6    9.6e-09   35.0   9.0    2.3  2  PHD          PHD-finger
  ------ inclusion threshold ------
      0.043   13.9  11.0      0.046   13.8   1.0    2.5  2  Zf_RING      KIAA1045 RING finger
       0.24   11.0   9.8        1.6    8.4   1.9    2.7  2  zf-PHD-like  PHD/FYVE-zinc-finger like domain
        1.6    8.7  17.6        2.6    8.0   3.3    2.4  2  Prok-RING_1  Prokaryotic RING finger family 1
        3.3    7.7  17.6       0.65    9.9   2.9    2.6  2  C1_1         Phorbol esters/diacylglycerol binding domain (C1
        3.5    8.0  13.6          6    7.3   3.7    2.6  2  C1_2         C1 domain
        6.9    6.8  18.9        2.3    8.4   3.3    2.7  2  PHD_4        PHD-finger


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   9.0   3.8e-12   9.6e-09       2      50 ..     759     801 ..     758     803 .. 0.89
   2 !   23.6   2.9   1.4e-08   3.5e-05       2      47 ..     886     929 ..     885     930 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 3.8e-12
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50 
                 C++C++     +++v+CdgC r+fH +C+++  +  ++  +ew+C++C 
  CCE30911.1 759 CSACGG----TGDVVCCDGCPRSFHFECVDMVRS--DNLPDEWFCNECL 801
                 ******....9*********************87..444459******5 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 1.4e-08
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSST CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCe 47 
                 C++C+k++ e + ++ C  C+   H +Cl+ppl  +++p+  w C+
  CCE30911.1 886 CHMCQKAASEIKGIIPCTVCSYYWHLDCLNPPLA-TPVPK-TWRCP 929
                 ******889999*********************9.55554.8***8 PP

>> Zf_RING  KIAA1045 RING finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   3.1     0.018        45       3      38 ..     754     787 ..     752     799 .. 0.85
   2 ?   13.8   1.0   1.8e-05     0.046       6      35 ..     884     915 ..     880     919 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.018
     Zf_RING   3 eedelCeiCevytaeelypCRvCtkvfHegClrklg 38 
                  +de C+ C    + + + C  C + fH +C+  ++
  CCE30911.1 754 DNDENCSACGG--TGDVVCCDGCPRSFHFECVDMVR 787
                 5899*****97..468999************98776 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.8e-05
     Zf_RING   6 elCeiCevyt..aeelypCRvCtkvfHegClr 35 
                  lC++C+  +   + ++pC vC+  +H +Cl+
  CCE30911.1 884 VLCHMCQKAAseIKGIIPCTVCSYYWHLDCLN 915
                 69****7655005678**************96 PP

>> zf-PHD-like  PHD/FYVE-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.9   0.00061       1.6       2      31 ..     760     784 ..     755     790 .. 0.79
   2 ?    6.5   1.2    0.0023         6       1      31 [.     886     915 ..     886     919 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00061
  zf-PHD-like   2 dtCaeskdeekgqlvyCqGCslsyhkaClG 31 
                  ++C+      +g +v+C GC  s+h +C+ 
   CCE30911.1 760 SACG-----GTGDVVCCDGCPRSFHFECVD 784
                  4443.....4589***************96 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0023
  zf-PHD-like   1 CdtCaeskdeekgqlvyCqGCslsyhkaClG 31 
                  C++C+++++e kg ++ C  Cs  +h  Cl 
   CCE30911.1 886 CHMCQKAASEIKG-IIPCTVCSYYWHLDCLN 915
                  9***999966665.89*************96 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.5    0.0041        10       3      36 ..     755     784 ..     753     788 .. 0.85
   2 ?    8.0   3.3     0.001       2.6       5      35 ..     884     914 ..     880     916 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0041
  Prok-RING_1   3 tgkkCpvCgkelkeedDiVvCpeCgtpyHraCye 36 
                  ++++C++Cg +     D+V C+ C  ++H +C +
   CCE30911.1 755 NDENCSACGGT----GDVVCCDGCPRSFHFECVD 784
                  56789999964....8****************75 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.001
  Prok-RING_1   5 kkCpvCgkelkeedDiVvCpeCgtpyHraCy 35 
                    C +C+k+ +e + i+ C++C   +H +C 
   CCE30911.1 884 VLCHMCQKAASEIKGIIPCTVCSYYWHLDCL 914
                  57****************************6 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   3.6    0.0043        11      10      47 ..     755     787 ..     749     793 .. 0.83
   2 ?    9.9   2.9   0.00025      0.65      10      44 ..     882     915 ..     876     916 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0043
                 S--B-TTT-SB--SSSS-EEEETTT--EE-CCCCTTS- CS
        C1_1  10 qptfCkhCgeflwgkekqglkCswCkllvHkkChekvp 47 
                 +   C+ Cg          ++C+ C +++H +C+  v 
  CCE30911.1 755 NDENCSACGGTG-----DVVCCDGCPRSFHFECVDMVR 787
                 566788888776.....99**************99886 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00025
                 S--B-TTT-SB--SSSS-EEEETTT--EE-CCCCT CS
        C1_1  10 qptfCkhCgeflwgkekqglkCswCkllvHkkChe 44 
                 +   C  C++    + k ++ C++C+++ H +C++
  CCE30911.1 882 HAVLCHMCQKAA-SEIKGIIPCTVCSYYWHLDCLN 915
                 5678******99.7778889*************85 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.7    0.0023         6      14      47 .]     752     783 ..     741     783 .. 0.86
   2 ?    5.5   2.3    0.0082        21      16      46 ..     881     913 ..     871     914 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0023
        C1_2  14 dssesfnCsaCgrkidgffYsCseCdfslhvrCa 47 
                 + +++ nCsaCg ++  +   C+ C  s+h++C+
  CCE30911.1 752 TADNDENCSACGGTG--DVVCCDGCPRSFHFECV 783
                 567889*******95..4469999*********6 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0082
        C1_2  16 sesfnCsaCgrkidgff..YsCseCdfslhvrC 46 
                      C+ C++  ++ +    C+ C +  h +C
  CCE30911.1 881 GHAVLCHMCQKAASEIKgiIPCTVCSYYWHLDC 913
                 45578*******66666789************* PP

>> PHD_4  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   7.8     0.032        81      30      67 ..     768     800 ..     752     801 .. 0.89
   2 ?    8.4   3.3   0.00089       2.3      21      66 ..     890     930 ..     869     932 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.032
       PHD_4  30 lmeCsvCyeivHpeClkekegegvvnedlpnsWeCpkC 67 
                 ++ C  C    H eC+++     v +++lp  W C +C
  CCE30911.1 768 VVCCDGCPRSFHFECVDM-----VRSDNLPDEWFCNEC 800
                 567999**********99.....89************* PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00089
       PHD_4  21 eeesetpsslmeCsvCyeivHpeClkekegegvvnedlpnsWeCpk 66 
                 ++++++ + ++ C+vC+   H +Cl+       +   +p+ W+Cp 
  CCE30911.1 890 QKAASEIKGIIPCTVCSYYWHLDCLNP-----PLATPVPKTWRCPA 930
                 344566678899*************88.....578899******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 8170.07
//
Query:       CCE30912.1  [L=1141]
Description: related to RNA binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-28   94.3   0.0    5.8e-06   25.7   0.0    5.8  6  PUF       Pumilio-family RNA binding repeat
      2e-12   46.8   0.0    4.6e-12   45.6   0.0    1.6  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   6.5e-10   5.8e-06       1      34 [.     602     635 ..     602     636 .. 0.91
   2 !   14.8   0.0   1.9e-06     0.017       2      34 ..     639     671 ..     638     673 .. 0.81
   3 !   17.2   0.0   3.3e-07    0.0029       4      35 .]     678     708 ..     676     708 .. 0.81
   4 !   15.5   0.0   1.1e-06    0.0099       3      35 .]     712     745 ..     710     745 .. 0.87
   5 !   13.4   0.0   5.1e-06     0.045       5      33 ..     752     780 ..     749     782 .. 0.89
   6 ?   -2.9   0.0      0.76   6.9e+03       3      14 ..     787     798 ..     786     799 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 6.5e-10
                 HHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF   1 sikgnlvqLstdqyGnyvvQkllehateeqkkli 34 
                 ++++++ +Ls+d  Gn vvQkl+eh++e+ ++ +
  CCE30912.1 602 EMLPEIAELSSDYLGNTVVQKLFEHCSEKVRDAM 635
                 5889999*********************988765 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.9e-06
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqkkli 34 
                 i ++  ++ ++++G+++ Qk+++++ ++q++ +
  CCE30912.1 639 IAPHMAEIGIHKNGTWAAQKIIDVCNTPQQMTL 671
                 667888999***************777776544 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 3.3e-07
                 GGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   4 gnlvqLstdqyGnyvvQkllehateeqkklil 35 
                  + v L  dqyGnyv+Q +l+ ++ +  ++i+
  CCE30912.1 678 AYTVPLFLDQYGNYVLQGCLK-FGAPFNDFIF 708
                 67788999************9.7777777765 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 1.1e-06
                 GGGHHHHHTSTTHHHHHHHHHHH.SCHHHHHHHH CS
         PUF   3 kgnlvqLstdqyGnyvvQklleh.ateeqkklil 35 
                 + + +++++ ++G+++++ +le  +++ q++++l
  CCE30912.1 712 LSRMWDIAQGRFGARAMRACLEShHSTQQQQKLL 745
                 567899*****************99999998875 PP

  == domain 5  score: 13.4 bits;  conditional E-value: 5.1e-06
                 GHHHHHTSTTHHHHHHHHHHHSCHHHHHH CS
         PUF   5 nlvqLstdqyGnyvvQkllehateeqkkl 33 
                 + vqL+t+ +G+ ++ +ll+++t + ++ 
  CCE30912.1 752 HSVQLATNANGALLLTWLLDTCTFPRRRT 780
                 889*******************9988775 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 0.76
                 GGGHHHHHTSTT CS
         PUF   3 kgnlvqLstdqy 14 
                  ++l+ L+t++ 
  CCE30912.1 787 VPHLIHLCTHKV 798
                 589999****96 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   5.2e-16   4.6e-12       1      64 [.     378     436 ..     378     439 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 5.2e-16
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkkl 64 
                 l++g++p+++t ++L e+F+  Gpi s+++ +     +k+++fV+Fe  e+  +A++++ngk++
  CCE30912.1 378 LWLGGVPTSTTTSTLVEMFKSHGPIISARVLT-----HKNCGFVNFERVESSVAAKASMNGKEI 436
                 689*****************************.....6***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.44
# Mc/sec: 7865.97
//
Query:       CCE30913.1  [L=839]
Description: probable protein kinase CHM1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-68  230.5   1.5    1.5e-67  227.8   1.5    2.1  1  Pkinase         Protein kinase domain
    1.1e-52  178.9   0.1    2.1e-52  178.0   0.1    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
    1.7e-23   82.7   0.4      4e-23   81.5   0.0    1.9  2  PBD             P21-Rho-binding domain
    1.2e-06   28.9   0.0    4.8e-06   26.9   0.0    2.1  1  PH_11           Pleckstrin homology domain
    1.4e-06   27.9   0.0    2.5e-06   27.0   0.0    1.5  1  Kinase-like     Kinase-like
    4.6e-05   22.4   0.1    4.6e-05   22.4   0.1    2.0  2  Pkinase_fungal  Fungal protein kinase
     0.0013   19.2   0.0     0.0032   17.9   0.0    1.8  1  PH              PH domain
     0.0016   17.5   0.0     0.0028   16.6   0.0    1.3  1  Haspin_kinase   Haspin like kinase domain
  ------ inclusion threshold ------
      0.016   15.1   0.2      0.016   15.1   0.2    3.0  3  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.8   1.5   7.4e-71   1.5e-67       1     264 []     551     819 ..     551     819 .. 0.89

  Alignments for each domain:
  == domain 1  score: 227.8 bits;  conditional E-value: 7.4e-71
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH............HHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke............kkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggel 85 
                 y+k++k+G+G++G+Vy a+ ket + +A  +++++  + +              + +++Ei ++k +kh+niv+++++f +  ++el++v+e++egg l
  CCE30913.1 551 YSKQKKIGQGASGSVYVAKIKETAQGIARDILRQQGPRAQVAikqmdlahqprkELIVNEIMVMKDSKHRNIVNFVDAFLKnnNQELWVVMEFMEGGPL 649
                 7899**************99999887777777666544443334455666666667***********************8866899************* PP

                 HHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHH CS
     Pkinase  86 adllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWsl 183
                 +d++ ++ s+see+++ i++++++gl++lH+++iiHrD+K++N+L+d +g++KitDFG++++l+  ++   ++vgt++++APEv+k++ey++kvDvWsl
  CCE30913.1 650 TDVIDNNPSISEEQISTICNETCRGLHHLHAQSIIHRDIKSDNVLLDARGNVKITDFGFCAKLTDAKSkRATMVGTPYWMAPEVVKQKEYGPKVDVWSL 748
                 ***********************************************************999988777699**************************** PP

                 HHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 184 GvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 G++ +e++  +pp+ +e+           l++++ i ++ +  l++++ +s+e+k +l+ +l++d k+R +a+ell+h++l
  CCE30913.1 749 GIMAIEMIESEPPYLNEEP----------LKALYLIATNGTPRLKKPERLSKELKAFLSVCLCVDVKSRASADELLAHDFL 819
                 ***************3333..........334566666788999**********************************996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.0   0.1   1.1e-55   2.1e-52       3     256 ..     553     814 ..     551     817 .. 0.92

  Alignments for each domain:
  == domain 1  score: 178.0 bits;  conditional E-value: 1.1e-55
                  EEEEEEEESSEEEEEEEEET..........TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg..........ekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdL 88 
                   +kk+G+Ga G+V+ +++k+          +++  + +Va+K+++  a++ +ke +++e+ +mk+ kh+niv+++ + +  ++++l++v+e+++gG L
   CCE30913.1 553 KQKKIGQGASGSVYVAKIKEtaqgiardilRQQGPRAQVAIKQMDL-AHQPRKELIVNEIMVMKDSKHRNIVNFVDAFLknNNQELWVVMEFMEGGPL 649
                  579****************99********99999**********55.555559999**********************9767778************* PP

                  HHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHH CS
  Pkinase_Tyr  89 lkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsks 186
                   + + ++  ++++ +++  ++ + ++G+++L++++++Hrd+ + NvLl+ +  vki+DfG + ++  +d  +k+ +      WmapE++k+k++  k 
   CCE30913.1 650 TDVIDNN--PSISEEQISTICNETCRGLHHLHAQSIIHRDIKSDNVLLDARGNVKITDFGFCAKL--TDAKSKRATMVGTPYWMAPEVVKQKEYGPKV 743
                  *****98..********************************************************..666667777778889**************** PP

                  HHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH..HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 187 DvWsfGvllwEiftlgespypglkneevlekl..kegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  DvWs G++ +E+++ +e py + ++ ++l  +  +   rl+kpe  ++el+ +++ c+  d ++R++  el+
   CCE30913.1 744 DVWSLGIMAIEMIE-SEPPYLNEEPLKALYLIatNGTPRLKKPERLSKELKAFLSVCLCVDVKSRASADELL 814
                  *************9.9*******9998888885344569***************************998876 PP

>> PBD  P21-Rho-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0     2e-26     4e-23       2      58 ..     182     238 ..     181     239 .. 0.98
   2 ?   -3.6   0.1       7.6   1.5e+04      28      55 ..     518     545 ..     517     548 .. 0.70

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 2e-26
                 B---EEEEEEEEEEEETTTTEEES--CCHCCCHHHT.TTSXXXBEXXXXXXXXXXXX CS
         PBD   2 IStPtnfkHtvHVGwdgdsgnftglPpewkkllkssgItedelkenpkavlsvdkfr 58 
                 +S+Ptnf H vHVG+d+++g+f+glPpew kll+ss It+++ ++np+av++v++f+
  CCE30913.1 182 VSNPTNFSHAVHVGFDAQTGEFVGLPPEWSKLLNSSAITKEDYERNPQAVFEVLDFY 238
                 9*******************************************************8 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 7.6
                 CCHCCCHHHT.TTSXXXBEXXXXXXXXX CS
         PBD  28 pewkkllkssgItedelkenpkavlsvd 55 
                  e k++  +s  +e+e +   k+++s+ 
  CCE30913.1 518 SERKQDARMSTMSENEVMAKLKEAVSKE 545
                 5666777777788888888888777665 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.4e-09   4.8e-06       1     102 [.      72     172 ..      72     175 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 2.4e-09
       PH_11   1 vkGylkkkgsk....aWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisaalfkidsirssksddllleistetkifflkgdsneet 95 
                 ++G+  +k+sk     Wk++++ +l++  L++ k+e+ kv ++   l    +  ++++  ++  f+i+++   +s++       +tk++++k +s+++ 
  CCE30913.1  72 KEGWASVKESKnfiqPWKQKYL-ILRKESLDFHKAEGGKV-SYTLYL--RDVVNVGRVEAAGTIFEIKRKPDGSSNSPGDD-DGQTKTLQIKVKSEDDL 165
                 589***********9*******.*****************.554433..33445555666666666666655444444333.346899999******** PP

       PH_11  96 eeWveal 102
                 +eW+  +
  CCE30913.1 166 YEWIDFI 172
                 ***9765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.2e-09   2.5e-06     112     249 ..     609     761 ..     552     807 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.2e-09
  Kinase-like 112 nallllpaasv.dl........................eilnkvlqkrset.hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekggl 183
                  n ++++++++  ++                        ++l +v++++++  +++  ti+         r   +L+a+ ++h ++++dn+lld +g +
   CCE30913.1 609 NEIMVMKDSKHrNIvnfvdaflknnnqelwvvmefmegGPLTDVIDNNPSIsEEQISTICNET-----CRGLHHLHAQSIIHRDIKSDNVLLDARGNV 701
                  555555544321444445555555555555566666667778888887776556666666654.....48899************************* PP

  Kinase-like 184 mlggft..aLvragtkvvlsevekgf.aPpEllgsrggytrknktkmthkldaWqlGlviyriwclklP 249
                  ++++f+  a  ++ ++ ++ +v   +   pE++ + +         +  k+d+W lG+ +  +   + P
   CCE30913.1 702 KITDFGfcAKLTDAKSKRATMVGTPYwMAPEVVKQ-KE--------YGPKVDVWSLGIMAIEMIESEPP 761
                  ***99733333444555558888554268899877.33........4559********99888766555 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   3.7       3.2   6.4e+03     255     280 ..     313     339 ..     284     375 .. 0.45
   2 !   22.4   0.1   2.3e-08   4.6e-05     313     391 ..     669     739 ..     495     748 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 3.2
  Pkinase_fungal 255 klkksesskkvekrsvdssv.stskrs 280
                     ++++++  ++ +++   ++  ++++r+
      CCE30913.1 313 QPQQRQQMQNSSNNYATQDAaREEQRR 339
                     111111111111111111111111111 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 2.3e-08
  Pkinase_fungal 313 rDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeH 391
                      +  +g+  L+  + i+HrDi  +N+l+      ++ +  + D+ +  +l d  ++s++ + +GT+++ma ev+k++e 
      CCE30913.1 669 NETCRGLHHLH-AQSIIHRDIKSDNVLLD-----ARGNVKITDFGFCAKLTD--AKSKRATMVGTPYWMAPEVVKQKEY 739
                     566789999**.99**************9.....7788899*********96..6667789*************98765 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.6e-06    0.0032       1     102 [.      70     174 ..      70     177 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.6e-06
                 EEEEEEEEEETSSSSC.SEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEE..........EESTSSS.TEEEEEEE CS
          PH   1 vvkeGwLlkkgsgkkk.swkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfel..........riverng.srtyllqa 87 
                 v+keGw + k+s++    wk+++++L++++l ++k++      +   ++ l++++ v     + +     fe+            + + g ++t+ +++
  CCE30913.1  70 VKKEGWASVKESKNFIqPWKQKYLILRKESLDFHKAE----GGKVSYTLYLRDVVNVG----RVEAAGTIFEIkrkpdgssnsPGDDD-GqTKTLQIKV 159
                 689***66666666556********************....55555555555555553....34445555555322222222122322.236******* PP

                 SSHHHHHHHHHHHHH CS
          PH  88 sseeerkeWikaiqs 102
                 +se+++ eWi  i  
  CCE30913.1 160 KSEDDLYEWIDFIYG 174
                 **********98865 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.4e-06    0.0028     146     256 ..     613     712 ..     509     722 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-06
  Haspin_kinase 146 slkelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGtdLeev....klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldn 237
                     +k++k  ++v+           d  lk++     +q+l +v+++ ++G +L+ v       s +q+  i  ++   L+   ++    HRd++ dn
     CCE30913.1 613 VMKDSKHRNIVNF---------VDAFLKNN-----NQELWVVMEFMEGG-PLTDVidnnPSISEEQISTICNETCRGLHHLHAQ-SIIHRDIKSDN 692
                    3333333222222.........24444444.....67788888887655.7777766445567899*************99887.678******** PP

  Haspin_kinase 238 iLvdknlnvtlidlk.lsRl 256
                    +L+d+ +nv + d+  +++l
     CCE30913.1 693 VLLDARGNVKITDFGfCAKL 712
                    *************9724444 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   2.9      0.88   1.8e+03     116     162 ..     321     367 ..     299     377 .. 0.66
   2 ?    1.9   0.0     0.088   1.7e+02      69     107 ..     633     680 ..     554     681 .. 0.65
   3 ?   15.1   0.2   8.2e-06     0.016     163     196 ..     678     709 ..     661     711 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.88
                 -SHHCHTCCHHHHHHCHHH.CCCGCCTCCHHHHHHHHHHHHHHHH--S CS
         APH 116 adflaqdlellrqlesata.rllaselldlleeleeqvlaalaallpg 162
                 +  +  ++++++ +e++++ +   +++++ +ee+e++ l+a  a lp+
  CCE30913.1 321 QNSSNNYATQDAAREEQRRkQMEGHRQRE-AEERERRELEAYNASLPK 367
                 44445666677777777544444444444.777888888888888875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.088
                 E...EEEEEE----EE-SS......HHHHHHHHHHHHHHHHHHCCHHC CS
         APH  69 l...lfalieyvpgrsllr......klsaaqlpellealgeflaalhq 107
                     l++++e+++g +l++        s++q+  ++ +  + l +lh+
  CCE30913.1 633 NnqeLWVVMEFMEGGPLTDvidnnpSISEEQISTICNETCRGLHHLHA 680
                 033367777777777777777677777777877777777777777775 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 8.2e-06
                 SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 163 elptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                   +++++H+D++++N+l+d++++    + Df+++
  CCE30913.1 678 LHAQSIIHRDIKSDNVLLDARGNVK--ITDFGFC 709
                 4589***************888887..9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1876  (0.104635); expected 358.6 (0.02)
Passed bias filter:                      742  (0.0413855); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.98u 0.27s 00:00:01.25 Elapsed: 00:00:00.45
# Mc/sec: 5570.07
//
Query:       CCE30914.1  [L=661]
Description: probable glycine--tRNA ligase GRS1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-24   85.4   0.2    4.2e-23   81.3   0.0    2.9  3  HGTP_anticodon  Anticodon binding domain
    2.4e-09   37.4   0.0    3.7e-08   33.5   0.0    2.5  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
  ------ inclusion threshold ------
       0.22   12.0   0.3    1.4e+02    3.0   0.0    3.4  3  SecD-TM1        SecD export protein N-terminal TM region


Domain annotation for each model (and alignments):
>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.34     2e+03      31      52 ..     162     184 ..     148     189 .. 0.75
   2 ?   -0.6   0.0      0.26   1.6e+03      37      75 ..     274     312 ..     260     325 .. 0.80
   3 !   81.3   0.0     7e-27   4.2e-23       1      93 [.     542     633 ..     542     634 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.34
                     EEEEES.SSSTHHHHHHHHHHTT CS
  HGTP_anticodon  31 rveldd.snesigkkireadllg 52 
                      + +d+ ++  +gk i+++dl++
      CCE30914.1 162 LARIDNyDGCELGKMIKKYDLKN 184
                     36677779999********9997 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.26
                     SSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETT CS
  HGTP_anticodon  37 snesigkkireadllgipfavvvGekelekgtvtvrdrd 75 
                      +   gkk  + +++ +   v ++ ++  +g+ t r+ +
      CCE30914.1 274 VDPQGGKKHDRFQEVAHVELVLLDRDTQLSGQTTTRKVA 312
                     456789999999999999999999999999999999875 PP

  == domain 3  score: 81.3 bits;  conditional E-value: 7e-27
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklke 93 
                     +v+++pl+++++ +++  kkl ++Lr+ gi+  +dds+ sigk++++ d+lg+p+ ++v++++l++gtvt+rdrdt++q r + +++++++k+
      CCE30914.1 542 KVLIVPLSSNSQ-FTPHIKKLSQQLRNLGISNRIDDSSASIGKRYSRNDELGTPLGITVDFQTLQDGTVTLRDRDTTDQLRAEASKILDAIKA 633
                     79*******888.****************************************************************************9986 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   6.2e-12   3.7e-08      12     179 .]     214     516 ..     210     516 .. 0.65

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 6.2e-12
                   EE-SSSHHHHHHHHHHHEE.EBGGSSEEEEEEEEEEBTTTSTBC.TTTB-SEEEEEEEEEEES.G.GGHHHHHHHHHHHHHHHHHHT.T.SCEEEEE CS
                   xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
  tRNA-synt_2b  12 iLkPtneetfvelirdevl.rskrLPlklyqiqtkyRdEksdsr.GLlRvreFhqkdgyvfha.e.aslddslrdlikaisriferl.glefraiie 103
                   +L+P+  ++    + +    ++ ++P+  + i+  yR+E s  r GLlRvreF + + + f+  + ++  d ++++  +   ++ r   l+ + + +
    CCE30914.1 214 YLRPETAQGQFLNFAKLLDyNQGNMPFASASIGKSYRNEIS-PRaGLLRVREFLMAEIEHFVDpQgGKKHDRFQEVAHVELVLLDRDtQLSGQTTTR 309
                   799999999999999885589999****************9.666*****************95457777888887765554444332555555555 PP

                   EGTTSC........................................................................................... CS
                   xxxxxx........................................................................................... RF
  tRNA-synt_2b 104 lmsaks........................................................................................... 109
                      +++                                                                                           
    CCE30914.1 310 KVAIGQavqeglvdnetlgyflarihlflekigidltkmrfrqhmanemahyacdcwdaemltstgwvecvgcadrsaydlsvhakktgapllvrer 406
                   5444345566777777777777777777777777777777777777777777777777777777777777766666666666666666666666666 PP

                   ...................................BTTSEEEEEEEEETT...............TSEEEEEEEEEEEETHHHHH.TTE..EEECTT CS
                   ...................................xxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxx.xxx..xxxxxx RF
  tRNA-synt_2b 110 ...................................adykdkkefeavses...............ltkgieigtiqklgtrlser.lga..tvlden 153
                                                      a             s               +++++e+  i++   ++ ++ +++  +   en
    CCE30914.1 407 reeplvieeweidlirknfgplfkkdakaveaalmA-------------SsqeerarmakqmqetSKATLEVPDIGNGTVEFNDEcIKIefRKRVEN 490
                   666666666666666666666555554444444441.............033333343334444355566666666554455443222221223377 PP

                   SSEEEEEEEEEEEEHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 154 nreksvimicaaigveRllsaileqn 179
                   +re ++ +i  ++g+ R+l  ++e+n
    CCE30914.1 491 TREYTPNVIEPSFGIGRILYSLIEHN 516
                   78888888888888888888887776 PP

>> SecD-TM1  SecD export protein N-terminal TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.051     3e+02      35      92 ..     252     309 ..     242     317 .. 0.89
   2 ?    2.7   0.0     0.029   1.8e+02      32      81 ..     438     487 ..     427     502 .. 0.87
   3 ?    3.0   0.0     0.024   1.4e+02      61      88 ..     596     623 ..     590     631 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.051
    SecD-TM1  35 qisaakatlkvdeatlskveqaLkeagievksielenesllvrfestdqqlkAkdvle 92 
                 +is+  + l v e +++++e+  + +g + ++ ++e  ++ +++ + d+ql ++++ +
  CCE30914.1 252 EISPRAGLLRVREFLMAEIEHFVDPQGGKKHDRFQEVAHVELVLLDRDTQLSGQTTTR 309
                 688888899999999************************************9988755 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.029
    SecD-TM1  32 pavqisaakatlkvdeatlskveqaLkeagievksielenesllvrfest 81 
                  a+  s++++ + + ++++++ +++L+  +i    +e+++e +++ f++ 
  CCE30914.1 438 AALMASSQEERARMAKQMQETSKATLEVPDIGNGTVEFNDECIKIEFRKR 487
                 4666688889999*********************************9876 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.024
    SecD-TM1  61 gievksielenesllvrfestdqqlkAk 88 
                 gi+v+  +l+++++++r ++t +ql+A+
  CCE30914.1 596 GITVDFQTLQDGTVTLRDRDTTDQLRAE 623
                 7999999*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4818.29
//
Query:       CCE30915.1  [L=185]
Description: probable NIP7 protein, required for efficient 60S ribosome subunit biogenesis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-27   93.8   0.0    9.6e-27   93.4   0.0    1.2  1  UPF0113_N    UPF0113 Pre-PUA domain
    4.2e-26   91.0   0.0    7.2e-26   90.3   0.0    1.4  1  UPF0113      UPF0113 PUA domain
  ------ inclusion threshold ------
       0.18   12.1   0.0       0.28   11.5   0.0    1.4  1  RNA_binding  RNA binding


Domain annotation for each model (and alignments):
>> UPF0113_N  UPF0113 Pre-PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.0   1.6e-30   9.6e-27       1      82 []       2      85 ..       2      85 .. 0.96

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 1.6e-30
   UPF0113_N  1 RklseeetrivfekLtkyigdnvkelld..rkdgtycfrlkkkrVyyvseellklaetikpenlisaGtclGkftktkkFrlsi 82
                R+l+e et+++f+kL++y+g+++k+l+    + +  cfrl+k+rVyyv+ ++++la +i++e+l+s+Gtc+Gkftkt+kFrl+i
  CCE30915.1  2 RPLTEPETKVLFTKLANYTGNSLKNLIAplDDGDRFCFRLNKDRVYYVRLSIANLATSIAREKLLSLGTCIGKFTKTGKFRLHI 85
                99**************************98444599***********************************************8 PP

>> UPF0113  UPF0113 PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.0   1.2e-29   7.2e-26       1      76 []      98     177 ..      98     177 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 1.2e-29
     UPF0113   1 kvvvkekaeklFLYGrdvlkesilkitesvkenqvvvVlnengeplGiGkirkdt...k.aspgkivvknlaDiGeYlRr 76 
                 k++v++++e+ FLYG +v+k ++ + +++++e+q+v+V+n+n++plG+G+++++t   + ++p++i++ ++aD+GeYlR+
  CCE30915.1  98 KIWVRPNGEMPFLYGGNVVKAHVGRWSDDCPEHQGVIVYNMNDTPLGFGITARSTgeaRrLDPTGITCFRQADCGEYLRD 177
                 89********************************************************77*******************5 PP

>> RNA_binding  RNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.7e-05      0.28      75     109 ..      23      56 ..       4      63 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.7e-05
                  HHHHCCHCCB-TTSEEEEEEEHHHHHTT---BESS CS
  RNA_binding  75 eLlkeleervdekgklylrldKQaaylgklslveg 109
                   L++ +   +d+++++++rl+K+++y  +ls+++ 
   CCE30915.1  23 SLKNLIAP-LDDGDRFCFRLNKDRVYYVRLSIANL 56 
                  34444444.777**************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1362.46
//
Query:       CCE30916.1  [L=451]
Description: related to glutamate 5-kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-39  136.0   0.7      2e-39  135.6   0.7    1.2  1  AA_kinase  Amino acid kinase family
    3.9e-13   49.2   0.2    2.2e-12   46.7   0.0    2.2  2  PUA        PUA domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.7   2.3e-43     2e-39       2     228 ..       9     226 ..       8     238 .. 0.92

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 2.3e-43
                 EEEEEE-TTCCCCTCC.....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHH CS
   AA_kinase   2 rvVvKlGGssltdkee.....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaalla 95 
                 ++V+KlG ss+ d+ +       l  +++   +l+++g+++v+V++g +++ gl +   ++++++++            +a+ +ala++g+  +++l++
  CCE30916.1   9 TIVIKLGTSSIVDETThepllPILTLIVDTAFKLRKNGHRVVIVSSG-AIGVGLRRM--EVDKRPKH------------LAQLQALAAIGQCRLMSLWD 92 
                 89*******999777779****************************9.999999999..********............7888**************** PP

                 TTHGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCC CS
   AA_kinase  96 aglpavglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvp 194
                 ++++  + + a++++t++++    d++++ + ++++++ll++gv+p+++++++l + +   +g++Dt++a+ A++++Ad l ++tdVd +yd++p+ +p
  CCE30916.1  93 SLFAHLSQPIAQILLTRNDI---ADRTRYLNAQNTVNQLLDMGVIPIVNENDTLAVSEI-KFGDNDTLSAITAAMIHADLLFLMTDVDCLYDKNPRTNP 187
                 ********************...*****************************9999987.59************************************* PP

                 TTCECCEE.EHHHCHH....CSSS.TTTHHHHCHHHHHH CS
   AA_kinase 195 darllpei.svdeaee....saselatgGmkvkhpaala 228
                 da++++ + +++ +++      s l+tgGm +k+ aa  
  CCE30916.1 188 DAKPIEIVdDFSVLDAdvssAGSSLGTGGMSTKIVAAKL 226
                 ********6444444488*999************99966 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.16   1.4e+03      33      54 ..      45      64 ..      34      68 .. 0.79
   2 !   46.7   0.0   2.5e-16   2.2e-12       1      74 []     332     420 ..     332     420 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.16
                TTSEEEEEETTSCEEEEEEESS CS
         PUA 33 egdvVaivdedgelvavGlany 54
                 g  V+iv+    +++vGl ++
  CCE30916.1 45 NGHRVVIVSS--GAIGVGLRRM 64
                5778999998..8999999888 PP

  == domain 2  score: 46.7 bits;  conditional E-value: 2.5e-16
                 CEEEE-HHHHHHHHTT-EEEGGGEEEEETT--TTSEEEEEETTS...............CEEEEEEESS-HHHHHHHCTSEEEEEEEEE CS
         PUA   1 grvvvddgAvkallsgasLlapGvvevegdfeegdvVaivdedg...............elvavGlanysseelakikggksveiervl 74 
                 g++ +d+g+ +all +a Ll+ G+v++ g+f +++vV++   ++                +v+++l+ny s+e+ +i+g+ s +i+ +l
  CCE30916.1 332 GTLFIDEGCHRALLDKAGLLPVGIVGIAGNFAQQEVVRLAVVNRrstptadgqmwdgepLEVGRALVNYASAEISRIMGHQSTDIHGIL 420
                 6899*********************************99988766788888899999999*************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3439.31
//
Query:       CCE30917.1  [L=276]
Description: related to Ku70-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-67  226.7   1.0    1.9e-67  226.3   1.0    1.1  1  Peptidase_M76  Peptidase M76 family
  ------ inclusion threshold ------
      0.061   13.6   0.0      0.092   13.1   0.0    1.4  1  Peptidase_M91  Effector protein
       0.11   12.1   0.6       0.25   10.9   0.6    1.7  1  Peptidase_M13  Peptidase family M13
       0.15   12.2   0.5       0.44   10.7   0.5    1.8  1  DiS_P_DiS      Bacterial Peptidase A24 N-terminal domain
        0.2   11.5   2.8       0.19   11.6   0.8    2.0  2  SprT-like      SprT-like family


Domain annotation for each model (and alignments):
>> Peptidase_M76  Peptidase M76 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.3   1.0   5.2e-71   1.9e-67       1     171 []      91     272 ..      91     272 .. 0.98

  Alignments for each domain:
  == domain 1  score: 226.3 bits;  conditional E-value: 5.2e-71
  Peptidase_M76   1 ercekavdellkesptvkfllksieklgceldserikcepCdek.........qaggfspeegillcenrlrskehledtlahElvhayDdlrakv 87 
                    +rcek+ ++l+++sp+++fl ++i++l+++ld+++i c++C+++         qaggf+p++gil+c+n++r++ hledt+ahE++ha+D+lr+kv
     CCE30917.1  91 KRCEKHLKWLFNYSPVIRFLSDRIKDLNGQLDESNIFCRRCPSRlhengsvsrQAGGFDPNYGILICANEMRNRGHLEDTVAHEMMHAWDHLRWKV 186
                    69***************************************999999*****99****************************************** PP

  Peptidase_M76  88 dw...snlrhlACseiRAanlsGecrvsrelrrgrklfkltkqhqkCvrrrAilsveanpkckdkeeaekaveevfesCfkDtePfd 171
                    dw   ++l+h+AC+eiRA++lsGecr+ re++++ +++++t+q+q+CvrrrA++sv+ +p ckd+++a+kav+ v++sCf+Dt+Pfd
     CCE30917.1 187 DWtgdKDLKHAACTEIRASMLSGECRWRREAFTR-GQWTVTQQFQNCVRRRAVQSVMGRPWCKDRDHATKAVDGVWDSCFADTRPFD 272
                    **9999***************************7.78*************************************************7 PP

>> Peptidase_M91  Effector protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.6e-05     0.092      89     116 ..     163     190 ..      66     210 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-05
  Peptidase_M91  89 kegrPsavLyHElaHaydalngtlddge 116
                    + g  + +++HE++Ha+d+l+ ++d + 
     CCE30917.1 163 NRGHLEDTVAHEMMHAWDHLRWKVDWTG 190
                    333334779**********987766554 PP

>> Peptidase_M13  Peptidase family M13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   6.8e-05      0.25      29      62 ..     160     193 ..     148     249 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.8e-05
  Peptidase_M13  29 eavNyggiGaviaHEltHgfddqgvqfdkegnla 62 
                    e  N g    ++aHE++H++d+   + d +g+  
     CCE30917.1 160 EMRNRGHLEDTVAHEMMHAWDHLRWKVDWTGDKD 193
                    56678888889*************9999999755 PP

>> DiS_P_DiS  Bacterial Peptidase A24 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   0.00012      0.44      25      52 ..      85     113 ..      77     138 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
   DiS_P_DiS  25 kprSrCpkCghklkwlel.iPvlSylllr 52 
                 +++S C++C+++lkwl +  Pv+ +l  r
  CCE30917.1  85 QEESDCKRCEKHLKWLFNySPVIRFLSDR 113
                 568************86626999999766 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.8   5.4e-05      0.19      59      79 ..     162     182 ..     154     199 .. 0.85
   2 ?   -1.3   0.0      0.54   1.9e+03      32      40 ..     207     215 ..     184     253 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.4e-05
   SprT-like  59 rsedrllntLaHElcHlalfv 79 
                 r++  l++t+aHE+ H++ ++
  CCE30917.1 162 RNRGHLEDTVAHEMMHAWDHL 182
                 457889***********9865 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.54
   SprT-like  32 taGranlkr 40 
                   G+++++r
  CCE30917.1 207 LSGECRWRR 215
                 567788877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1988.64
//
Query:       CCE30918.1  [L=408]
Description: probable protein kinase Eg22 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-71  239.8   0.0    3.9e-71  239.5   0.0    1.1  1  Pkinase        Protein kinase domain
    1.3e-40  139.4   0.0    1.7e-40  138.9   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
    4.4e-06   26.2   0.0    1.1e-05   24.9   0.0    1.7  2  Kinase-like    Kinase-like
    0.00084   18.7   0.0     0.0015   17.9   0.0    1.4  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.054   13.1   0.0       0.12   12.0   0.0    1.4  1  RIO1           RIO1 family
      0.095   12.3   0.0       0.38   10.4   0.0    1.8  2  FTA2           Kinetochore Sim4 complex subunit FTA2
       0.11   12.0   0.0       0.21   11.1   0.0    1.5  1  YrbL-PhoP_reg  PhoP regulatory network protein YrbL
       0.12   12.3   0.0       0.17   11.7   0.0    1.4  1  APH            Phosphotransferase enzyme family
       0.26   10.3   0.0       0.41    9.6   0.0    1.2  1  Seadorna_VP7   Seadornavirus VP7


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.5   0.0     2e-74   3.9e-71       1     264 []     121     385 ..     121     385 .. 0.92

  Alignments for each domain:
  == domain 1  score: 239.5 bits;  conditional E-value: 2e-74
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 +e  + lG+G+fG+Vy a+e+++g   A+K++ k++ +k    ++v+rEi+i  +l+hpn++++++ f+++++++l+le++ +gel ++l+++g ++e+
  CCE30918.1 121 FEIGRPLGKGKFGRVYLARERTSGFVCALKVLHKHELQKGGVeRQVRREIEIQSNLRHPNVLQMFGHFHDSKRVFLILEFAGKGELYKYLRDEGRFPEW 219
                 577899***************************99988766569******************************************************* PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH....TTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl....keneyskkvDvWslGvilyelltg 193
                 +a ++++q++++l+ylH+k++iHrD+KpeNiL+  +gelKi+DFG + ++ ++   t+++gt +Yl+PE++    ++n y +k+D+WslG+++ye+l g
  CCE30918.1 220 KAAQYVAQMASALRYLHRKHVIHRDIKPENILVGIHGELKISDFGWSVHAPNTR-RTTMCGTLDYLPPEMIkpgtSDNYYNEKIDLWSLGILMYEFLVG 317
                 ***************************************************988.9***************999888999******************* PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 + pf+ e++++  e + ++  +i    + +++++  +s +s+ea+dl++kll  +p+kR++ +++  hp++
  CCE30918.1 318 RAPFEPEDSED--EGNPRE-CSIKTQRRIVRLDMTIPSFVSPEARDLIRKLLVLNPEKRISLDQVQVHPWI 385
                 *****666655..334444.2233333367889999**********************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.9   0.0   8.6e-44   1.7e-40       2     256 ..     122     380 ..     121     382 .. 0.87

  Alignments for each domain:
  == domain 1  score: 138.9 bits;  conditional E-value: 8.6e-44
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  e+g+ lG+G+fG+V+ ++ +    ++   +a+K+l+++  ++   ++++ +e++i ++l+hpn++++ g   +++++++++e++ +G+L k+Lr++  
   CCE30918.1 122 EIGRPLGKGKFGRVYLARER----TSGFVCALKVLHKHELQKGgvERQVRREIEIQSNLRHPNVLQMFGHFHDSKRVFLILEFAGKGELYKYLRDE-- 213
                  68899************999....88999******8777666556899999********************************************8.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE....EEHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk....ftsksDvWsf 191
                   ++   +  ++++q+A++++yL++k+++Hrd+   N+L+  +   kisDfG + +       +++++    + +++pE++k ++    +++k D Ws 
   CCE30918.1 214 GRFPEWKAAQYVAQMASALRYLHRKHVIHRDIKPENILVGIHGELKISDFGWSVHA----PNTRRTTMCGTLDYLPPEMIKPGTsdnyYNEKIDLWSL 307
                  99999***********************************************9988....445566677789********98777777********** PP

                  HHHHHHHHTTSSGTTTTSHHHH.......HHHHHHTTEE.....S-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 192 GvllwEiftlgespypglknee.......vleklkegkr.....lekpekcpeelyelmkkcweedpeeRptfselv 256
                  G+l++E +  g+ p++  ++e+           +k+++r     ++ p+ +++e  +l++k +  +pe+R ++ +++
   CCE30918.1 308 GILMYEFLV-GRAPFEPEDSEDegnprecS---IKTQRRivrldMTIPSFVSPEARDLIRKLLVLNPEKRISLDQVQ 380
                  ******998.****8766555445554432...2333333334589999**********************999875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1   2.1e+03      17      46 ..     124     153 ..     122     173 .. 0.82
   2 !   24.9   0.0   5.7e-09   1.1e-05     151     258 ..     226     329 ..     207     373 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
  Kinase-like  17 gellkkgdrsvvfevkdqetgeplavkvfl 46 
                  g +l+kg+++ v+++++   g   a+kv  
   CCE30918.1 124 GRPLGKGKFGRVYLARERTSGFVCALKVLH 153
                  578999*********999988888888754 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 5.7e-09
  Kinase-like 151 lqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwcl 246
                  +q+     +L+ k ++h +++++n+l   +g l++ +f+  v a +  +  +++    + PpE++   g+        +  k+d W lG+ +y     
   CCE30918.1 226 AQMASALRYLHRKHVIHRDIKPENILVGIHGELKISDFGWSVHAPNTRR-TTMCgtLDYLPPEMIKP-GT----SDNYYNEKIDLWSLGILMYEFLVG 317
                  566667789**********************************999999.5555245688****998.44....5667889*************9999 PP

  Kinase-like 247 klPltlateeak 258
                   +P++   +e +
   CCE30918.1 318 RAPFEPEDSEDE 329
                  999987666654 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   7.7e-07    0.0015      98     155 ..     199     256 ..     187     279 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 7.7e-07
         Kdo  98 rlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 + +g  +L ++l++  +++e + ++ + + + + + lhr +v H+d+ + nil+  ++
  CCE30918.1 199 EFAGKGELYKYLRDEGRFPEWKAAQYVAQMASALRYLHRKHVIHRDIKPENILVGIHG 256
                 467778899999997779999999*****************************98776 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     6e-05      0.12      78     156 ..     191     270 ..     162     277 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6e-05
                 EETTEEEEE--EETTEEGGBHHHCG-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTTEEETT CS
        RIO1  78 lkrhvlvmefigedgvaapklkdvee..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQaveld 156
                  kr  l++ef g +g  ++ l+d  +  e +a+++++++ +++ + +++ +++H D+   N+lv    ++ i D++ +v++ 
  CCE30918.1 191 SKRVFLILEFAG-KGELYKYLRDEGRfpEWKAAQYVAQMASAL-RYLHRKHVIHRDIKPENILVGIHgELKISDFGWSVHAP 270
                 56678999**99.899999999999555667777777777755.5566****************988799999999999765 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.64   1.3e+03      28      63 ..     125     165 ..     115     206 .. 0.63
   2 ?   10.4   0.0   0.00019      0.38     174     206 ..     221     253 ..     213     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.64
        FTA2  28 eyLgkglhsiVlkvkirgk..eYALKlFrfleaeele...e 63 
                   Lgkg  ++V+ ++ r++  + ALK+  ++e ++     +
  CCE30918.1 125 RPLGKGKFGRVYLARERTSgfVCALKVLHKHELQKGGverQ 165
                 67889999999999888885566899887775554435431 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00019
        FTA2 174 evsqlpkllrdlkklhklgIvvrDlkeenyidg 206
                   +++ ++ + l+ lh+ ++++rD+k+en++ g
  CCE30918.1 221 AAQYVAQMASALRYLHRKHVIHRDIKPENILVG 253
                 567899***********************9866 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.21     121     155 ..     221     255 ..     196     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
  YrbL-PhoP_reg 121 taelkeaLdefleelldnhivtndlsakNivvkkn 155
                    +a++  ++   l++l   h++ +d++++Ni+v+ +
     CCE30918.1 221 AAQYVAQMASALRYLHRKHVIHRDIKPENILVGIH 255
                    34788899999********************9865 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.7e-05      0.17     137     181 ..     215     253 ..     135     270 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.7e-05
                 CGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC CS
         APH 137 laselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvd 181
                 + +e++  ++ +++  +a  ++      ++ ++H+D++p N+lv 
  CCE30918.1 215 RFPEWKA-AQYVAQ--MASALRY---LHRKHVIHRDIKPENILVG 253
                 4444444.222222..3334444...459**************97 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00021      0.41     152     187 ..     230     263 ..     219     270 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00021
  Seadorna_VP7 152 kdLmdfhsestnllhGDcnpenlmcDknGylklvDP 187
                   ++L  +h   ++++h D++pen++    G lk+ D 
    CCE30918.1 230 SALRYLH--RKHVIHRDIKPENILVGIHGELKISDF 263
                   6788899..6789********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2765.45
//
Query:       CCE30919.1  [L=431]
Description: uncharacterized protein CPUR_04770 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        1.2    9.3   2.5        9.6    6.4   0.3    2.5  2  Bromodomain  Bromodomain


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.3   0.00054       9.6      51      83 ..      60      92 ..      57      93 .. 0.92
   2 ?    1.8   0.1     0.015   2.6e+02      51      68 ..     102     119 ..      93     124 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00054
                 -SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHH CS
  Bromodomain 51 YksladfeadlkllfsNarkyngegsviyelae 83
                 Y   ++f+ad++  +s a  ++ + +  y++a+
   CCE30919.1 60 YAEATAFYADATAFYSEATAFFVDATAFYVDAT 92
                 88999*********************9999986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.015
                  -SSHHHHHHHHHHHHHHH CS
  Bromodomain  51 YksladfeadlkllfsNa 68 
                  Y   ++f+ad++ ++  a
   CCE30919.1 102 YADATAFYADATAVYADA 119
                  566666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3240.58
//
Query:       CCE30920.1  [L=281]
Description: related to TIP41-negatively regulates the TOR signaling pathway [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-66  223.5   0.5    1.4e-66  223.2   0.5    1.1  1  TIP41     TIP41-like family


Domain annotation for each model (and alignments):
>> TIP41  TIP41-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.2   0.5   8.1e-71   1.4e-66       1     172 []      60     239 ..      60     239 .. 0.94

  Alignments for each domain:
  == domain 1  score: 223.2 bits;  conditional E-value: 8.1e-71
       TIP41   1 mvFgnnlleleheksgvklefnaldaLkavkkeeee..kvayakewkksrkkk....kevvkpyDwtytteYkGtl..eeklkveeteeeiplekLkrk 91 
                 m++g+nl++++h++sg++++f++ daL+av+k+e++  kvaya++w+++r+++    ke vkpyDw+y+t+Y+Gt+  +e +  ++ e+e+p+e L+r+
  CCE30920.1  60 MIYGDNLVSITHKPSGWSIAFTTPDALDAVDKTERHmlKVAYARDWESTRETQtrkiKEAVKPYDWSYSTTYAGTVtaSEPAFAHSPEAEMPMELLRRR 158
                 9********************************8889*************98888888999***************64333344555669********* PP

       TIP41  92 dpilfydevvLyedeLadnGisllsvkvrvmpeclllLlRfflRvDnvlvrvrdtrvyvefeseevlrevkekeakyeevk 172
                 dpilfyd+vvLye+eL+dnG+s++s+kvrv++e++llL+R+f+R+Dnvlvr+rdtrv+v+f++++v+re+++kea++++vk
  CCE30920.1 159 DPILFYDDVVLYESELDDNGVSIYSAKVRVHEERMLLLCRLFMRLDNVLVRIRDTRVFVDFKTQHVVREYTAKEASFQDVK 239
                 ******************************************************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2188.97
//
Query:       CCE30921.1  [L=664]
Description: uncharacterized protein CPUR_04772 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        7.5    6.1   7.7         20    4.7   7.7    1.6  1  Cytochrom_B558a  Cytochrome Cytochrome b558 alpha-subunit


Domain annotation for each model (and alignments):
>> Cytochrom_B558a  Cytochrome Cytochrome b558 alpha-subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   7.7    0.0011        20     132     170 ..     288     326 ..     280     343 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0011
  Cytochrom_B558a 132 piekkakerervgetikkppsnppprppaevrrkqaeas 170
                        +++++++++ ++  k+p   ppp p ++ rr+ + + 
       CCE30921.1 288 QQQQQQQQQQQHQQEDKQPSLSPPPSPSPDPRRRSTRKR 326
                      4567778888889999**************999887632 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2609  (0.145518); expected 358.6 (0.02)
Passed bias filter:                      862  (0.0480785); expected 358.6 (0.02)
Passed Vit filter:                       194  (0.0108205); expected 17.9 (0.001)
Passed Fwd filter:                        82  (0.0045736); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.56u 0.39s 00:00:01.95 Elapsed: 00:00:00.55
# Mc/sec: 3630.51
//
Query:       CCE30922.1  [L=616]
Description: probable RNA helicase, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-30  105.0   0.0    5.9e-30  104.3   0.0    1.4  1  DEAD        DEAD/DEAH box helicase
    1.2e-19   70.7   0.0    1.5e-18   67.2   0.0    2.4  2  Helicase_C  Helicase conserved C-terminal domain
    1.6e-05   25.0   0.0    3.5e-05   23.9   0.0    1.6  1  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
        0.3    9.8   3.1        2.4    6.8   0.1    2.6  3  UTP25       Utp25, U3 small nucleolar RNA-associated SSU proc


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   1.3e-33   5.9e-30       1     175 [.     183     401 ..     183     402 .. 0.83

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 1.3e-33
                 -HHHHHHHHHHH.....TT........CEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS...................................- CS
                 xxxxxxxxxxxx.....xx........xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx...................................x RF
        DEAD   1 tdiQaeaiplil.....gg........gdvlvaaeTGsGKTlaflipvlqivyet...kgktg...................................p 48 
                 t++Q+ aip++l     +g        +++l+aaeTGsGKTla+l+p+++++ +    +                                       p
  CCE30922.1 183 TPVQKLAIPALLrtsvaKGskepgkelESFLLAAETGSGKTLAYLLPAIDALKRAeaeD---PdiqafnerfreekkrqqeegfkgkrfeephptlarP 278
                 799*********6555511667777779999*********************6655440...156666666677777788999999999999999999* PP

                 EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH..TTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  49 kalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld..ngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinri 145
                 k+++++Pt eLa+q+l+  k + + ++ ++++i ++ +a+  ++++    gvd++++tp  l+ + +     ls+v+ l++DEad lld +fs+   +i
  CCE30922.1 279 KIVVLVPTAELAQQVLRVSKLLSHIVKFKTEMISSDLKAKVIHRNMYgpMGVDVIIATPHLLATMADADPNILSRVSHLIVDEADSLLDRSFSPITTSI 377
                 ****************99888888899999999888888888888833366*************99766656*************************** PP

                 HHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 146 lnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 +++    t +    ++++++SAT+p+++++
  CCE30922.1 378 IERA---TPSL---KKLVCCSATIPQKINN 401
                 ***9...3333...369********88765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.21   9.2e+02      16      53 ..     277     318 ..     272     337 .. 0.69
   2 !   67.2   0.0   3.3e-22   1.5e-18      11     111 .]     464     584 ..     455     584 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.21
                 TSEEEEEESSHHHHHH....HHHHHHHT.TSTEEEESTTSTHH CS
  Helicase_C  16 ggkilifvntidrlek....vklllekk.gikvavlhgelpqn 53 
                 + ki++ v+t + +++     kll ++  ++k+ ++ ++l+++
  CCE30922.1 277 RPKIVVLVPTAELAQQvlrvSKLL-SHIvKFKTEMISSDLKAK 318
                 779999999999666555533444.333588888888888776 PP

  == domain 2  score: 67.2 bits;  conditional E-value: 3.3e-22
                 HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTS....................SSEEEESGGGTSSSTSTTESEE CS
  Helicase_C  11 kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkge....................sdvLiatdvaerGidipkvnlV 88 
                 k e + +++l+fvn +++ e+ +++l ++kgi++ +l+ ++p +   e l+ f +                      ++vL+ td a+rGid   v++V
  CCE30922.1 464 KDEIDVRRVLVFVNEREKTEEvAEYL-RSKGINAEALNRDTPEKRHGELLDTFTSPLplripapssasngrgrslanVKVLVVTDLASRGIDTVAVKHV 561
                 56667789*********998867777.6779**********************877799999**************999******************** PP

                 EESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  89 infdlprnvtsyiqriGRtgRag 111
                 i +d+p ++ ++i+r GR+gR++
  CCE30922.1 562 ILYDVPNSTIDFIHRLGRAGRMN 584
                 *********************85 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   7.9e-09   3.5e-05       2     146 ..     180     367 ..     179     397 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 7.9e-09
                 -EE-HHHHHHHHHHT.............TTSEEEEEESTTSTHHHHH.HHHHHHH-S.......................................... CS
      ResIII   2 lelreyQeeaienlleklks.......krdkrglikmaTGtGKTlva.aklierllkkgkee..................................... 55 
                 +++ + Q+ ai +ll +  +       k+ + +l++++TG+GKTl + + +i++l++++ e+                                     
  CCE30922.1 180 IKPTPVQKLAIPALLRTSVAkgskepgKELESFLLAAETGSGKTLAYlLPAIDALKRAEAEDpdiqafnerfreekkrqqeegfkgkrfeephptlarp 278
                 6788999999999994433346666777777****************889999999998888************************************* PP

                 -EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS CS
      ResIII  56 kflflvprkslleqtleefkkflseaykeigkkvsgdkkka....kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlga 146
                 k+++lvp+ +l +q l+  k +++  +k++++ +s+d k +    +++     +++++t + l         + + +  +r   +i+DEa  l +
  CCE30922.1 279 KIVVLVPTAELAQQVLRVSKLLSHI-VKFKTEMISSDLKAKvihrNMYGPMGVDVIIATPHLLATMA-----DADPNILSRVSHLIVDEADSLLD 367
                 ***************9766666655.45677777777777667778888899999999999998888.....77888888888888888866555 PP

>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1   0.00054       2.4      52      94 ..     253     296 ..     242     319 .. 0.70
   2 ?    2.8   0.2    0.0091        41     162     212 ..     330     374 ..     306     383 .. 0.83
   3 ?   -2.8   0.0      0.43   1.9e+03     400     412 ..     557     569 ..     553     575 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00054
       UTP25  52 nneklaklke.ssddlelrdqgftrpkvLillptreaalevvel 94 
                 +++k ++++  + +  e  +  + rpk+++l+pt e a +v++ 
  CCE30922.1 253 EEKKRQQEEGfKGKRFEEPHPTLARPKIVVLVPTAELAQQVLRV 296
                 344444444445566677788899**************998643 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0091
       UTP25 162 sdiiiaSPlglrliieeedkkkrdtdfLsSiEvlivdqadvlemQnwehve 212
                  d+iia P  l ++ +       d + Ls +  livd+ad+l   +++ ++
  CCE30922.1 330 VDVIIATPHLLATMAD------ADPNILSRVSHLIVDEADSLLDRSFSPIT 374
                 699*****99988766......7899***************9877776665 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.43
       UTP25 400 gvkkvilYklPen 412
                  vk+vilY++P+ 
  CCE30922.1 557 AVKHVILYDVPNS 569
                 59*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 3951.45
//
Query:       CCE30923.1  [L=101]
Description: uncharacterized protein CPUR_04774 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 748.78
//
Query:       CCE30924.1  [L=128]
Description: uncharacterized protein CPUR_04775 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1034.35
//
Query:       CCE30925.1  [L=277]
Description: uncharacterized protein CPUR_04776 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-43  147.7   0.0      5e-43  147.5   0.0    1.0  1  Spherulin4  Spherulation-specific family 4


Domain annotation for each model (and alignments):
>> Spherulin4  Spherulation-specific family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   0.0   2.8e-47     5e-43       2     224 ..      21     258 ..      20     272 .. 0.84

  Alignments for each domain:
  == domain 1  score: 147.5 bits;  conditional E-value: 2.8e-47
                 EEEE--S---....TTT..THHHHHHHHH-TTS-EEEEE-SSSSS-SSSS...--HHHHHHHHHHHTSTTEEEEEEEE-TTTTS-HHHHHHHHHHHHHH CS
  Spherulin4   2 ilvPlYiypl....ksa..WdplfsaikanpslefvvivNPgsGPgsapl...pdadYsaalkklsaytnvevlGYvatgygkrelsevkkdidtYaaw 91 
                 +++PlY+yp+    ++a  W+p+f+a+++ psl f+ +vNP +GPg++ +    d +Y + +++l+a +n++++GYv+t+y k +++e k++++ +++w
  CCE30925.1  21 LILPLYLYPSaeynDGAanWKPVFAAASSSPSLPFLTVVNPFNGPGQSGQpgdADRNYITGVSQLNALRNIKTIGYVRTNYSKAPMQELKANMTIWKSW 119
                 68********887633378***************************99663345689****************************************** PP

                 HH....TS--SEEEEES--S-HHHHHHHHHHHHHHHHSTTSTTT-EEEEE-SS---GGGG.GGSSEEEEEEEEHHHHHHT...TGGGGG......--GG CS
  Spherulin4  92 ls....airldGIFvDEvptdakyldylqritdlvkssaattkeaivihNPGtvsedaffsrlaDyvvvfEnslaayedsgdkvsanla....tpekra 182
                 +s    +i ++GIF+DE    a++l+y+++ +d++++ ++ ++  +v+ N Gt+  + ++ +++D+v+ fE++l+      +++ +++     ++ +  
  CCE30925.1 120 SSykaaNISIHGIFFDES---AANLSYMREAADFARKLFG-ASATTVVCNFGTTAPEVYY-DICDVVIAFESCLNCAMLP-QYKGRETIranvPKGRVG 212
                 *9***************5...789****************.89999**************.***********88644333.233333333466778889 PP

                 GEEEEEE---TTS-T..HHHHH....HHHHHHH.H-SEEEE---SS CS
  Spherulin4 183 kaaavvhtvektensekeaikk....lveavtqhklggvflTdatd 224
                 +aa++v++++ + ++   a +      + +v+++++g+ ++ +a +
  CCE30925.1 213 RAAVIVNSFKGKAYDGAVADEAllkrYAGDVKKEGVGWAYFCSAGY 258
                 999******7766654433333444488888889999999988874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2122.88
//
Query:       CCE30926.1  [L=386]
Description: uncharacterized protein CPUR_04777 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-06   27.5   0.0    5.2e-06   26.6   0.0    1.4  1  AMPK1_CBM  Glycogen recognition site of AMP-activated protein


Domain annotation for each model (and alignments):
>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.9e-10   5.2e-06       4      80 ..       9      96 ..       6     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.9e-10
   AMPK1_CBM  4 vikWkggGkk..VyvtGsfn..nWkkkipLk.....ksekdfsvilkLpeGt.hqykFiV..DgewrvdpdlptatdeeGnlnNvievk 80
                ++ +++ G+    +v+Gsf+   W+  ++++     + e++f++ + +++G+ ++y+F    D++w vd++  ta ++ G+ +N+++v 
  CCE30926.1  9 TLIYQKTGHAapLFVAGSFTnpAWEC-QEMHsvaneSGEHRFTIQVPVEPGKeYRYRFRAsgDDSWFVDERRSTALNSLGQNCNILRVP 96
                55666655554489******555954.56666777444588999999999954899997655999*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2926.35
//
Query:       CCE30927.1  [L=441]
Description: uncharacterized protein CPUR_04778 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-16   59.0   4.1    6.8e-16   59.0   4.1    3.8  3  Iwr1            Transcription factor Iwr1


Domain annotation for each model (and alignments):
>> Iwr1  Transcription factor Iwr1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6  13.8    0.0018        33      30      65 ..     271     305 ..     253     306 .. 0.79
   2 !   59.0   4.1   3.8e-20   6.8e-16       2      74 .]     308     377 ..     307     377 .. 0.92
   3 ?    0.4   1.0     0.076   1.4e+03      18      45 ..     394     418 ..     382     428 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0018
        Iwr1  30 vieeedeelldafaeddedsdeeededdeDsNaEdn 65 
                 +++ +d++  ++++++++d+d +ed+dd+D+ +E+n
  CCE30927.1 271 QAKPKDDAAENEVDGNEDDED-DEDDDDDDEDDENN 305
                 566678888889999999977.88899999999997 PP

  == domain 2  score: 59.0 bits;  conditional E-value: 3.8e-20
        Iwr1   2 dYVyDvYvreeeeeeseeeetekdigvlvieeedeelldafaeddedsdeeededdeDsNaEdnyrnDYPdeE 74 
                 ++ yD Yvr   ++++  +++++++g+lv+ ee+e +l  f+++  d+d+e  eddeD+NaE++y++DYP++E
  CCE30927.1 308 KWLYDEYVRI-PAHSVAVDVPSTEVGILVLGEEEESVL--FFGSALDEDDELGEDDEDENAENYYAADYPEDE 377
                 799****994.3578999*****************999..9999999999999*******************8 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.076
        Iwr1  18 eeeetekdigvlvieeedeelldafaed 45 
                  +++++++++ + +ee+de +l   ++d
  CCE30927.1 394 GNNSDDEEFDEILYEEQDEMVL---QGD 418
                 4455555666666666666555...222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1069  (0.0596241); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 3172.11
//
Query:       CCE30928.1  [L=372]
Description: uncharacterized protein CPUR_04779 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2924.59
//
Query:       CCE30929.1  [L=224]
Description: related to transcription initiation factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-16   58.5   0.0    1.4e-15   57.5   0.0    1.5  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   7.8e-20   1.4e-15      19     179 ..      11     189 ..       4     204 .. 0.76

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 7.8e-20
                 TT----B-HHHHHHHHHHHHHHTT..S---EEEE-SSHHHHHHHHHHHHCTT.........--EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHH CS
  His_Phos_1  19 grtdvpLteeGreqAealaerlag..epidaiysSplkRarqTaeliaealg.........lpveldegLrEidfGdweglttaeiaeeypeeleawlr 106
                   +d+ Lt  G+ q ++l+++l     ++d++ysSp+ R+ qT+ ++ e  +         +++  + g+rE+   +   ++   +    +  +  +++
  CCE30929.1  11 HGGDPSLTSYGIDQSKELGAHLMTldPGVDKVYSSPFYRCLQTMSPFMELQHqraqtgstvTSMLPEHGIREWFGSAPFDHPEPAAPTILKSMFPSYDQ 109
                 568********************944455666**************99866677886666666666777777655544455566666666666666555 PP

                 HHH-GGG-B..S-BHHHHHHHHHHHHHHHHHHTTTSE...EEEEE-HHHHHHHHHHHHT--GGGGG..GB---TT-EEEE CS
  His_Phos_1 107 dpadvrppg..gEsledvaaRvaaaleelaarheget...vlvVsHggvirallarllglpleelr..rleldnaslsvl 179
                 +   v  p   gE+le++++R+a al+ ++++++ +    v++++H++vi ++ + l+g  + +++  +++  +++lsv 
  CCE30929.1 110 GYVPVVTPSkrGETLEQLQDRIAMALRGIVEQCDADGsraVVLCTHAAVIIMIGRILTGQFPVKVDsdDFKAYTCGLSVY 189
                 55555555589**********************9998999************9999997766665522566677777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1756.67
//
Query:       CCE30930.1  [L=692]
Description: related to F-box protein Fbl2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-09   35.0   0.2    1.9e-08   34.0   0.2    1.6  1  F-box-like  F-box-like
    5.3e-07   29.2  10.1        1.4    9.1   0.1    8.2  9  LRR_6       Leucine Rich repeat
    7.5e-07   29.4  10.7    0.00062   20.1   0.1    5.8  6  LRR_4       Leucine Rich repeats (2 copies)
    7.9e-07   28.8   0.5    2.2e-06   27.4   0.5    1.8  1  F-box       F-box domain
    7.6e-05   22.7  14.1        1.4    9.8   0.0    8.5  8  LRR_1       Leucine Rich Repeat
  ------ inclusion threshold ------
      0.051   13.9   0.0       0.14   12.5   0.0    1.7  1  PRANC       PRANC domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.2   6.4e-12   1.9e-08       1      45 [.     177     220 ..     177     223 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 6.4e-12
  F-box-like   1 isrLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrl 45 
                 +  LP+Ei ++I s+L p++L+++++V+r+++ +++d  + W+ l
  CCE30930.1 177 WEELPNEIRVRIVSFLRPKELVQASRVSRSFHKLCFDG-QCWTSL 220
                 678**********************************9.***987 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.71   2.1e+03       9      17 ..     163     171 ..     161     172 .. 0.83
   2 ?    0.5   0.0      0.29   8.7e+02       5      13 ..     245     253 ..     243     254 .. 0.86
   3 ?    0.6   0.2      0.25   7.5e+02       2      12 ..     295     305 ..     294     313 .. 0.86
   4 ?    4.4   0.0     0.016        48       1      22 [.     320     342 ..     320     343 .. 0.89
   5 !    6.6   0.0    0.0031       9.2       3      20 ..     415     433 ..     413     437 .. 0.82
   6 ?    1.4   0.0      0.15   4.5e+02       8      23 ..     446     462 ..     441     463 .. 0.83
   7 ?   -2.0   0.1       1.8   5.5e+03       4      12 ..     468     476 ..     466     482 .. 0.77
   8 !    9.1   0.1   0.00048       1.4       4      21 ..     497     515 ..     497     517 .. 0.92
   9 ?    2.6   0.1      0.06   1.8e+02       1      21 [.     520     540 ..     520     541 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.71
       LRR_6   9 dLsgNdIgD 17 
                 ++sgN+I++
  CCE30930.1 163 QISGNGISN 171
                 79*****87 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.29
       LRR_6   5 LteLdLsgN 13 
                 +++L+L+g+
  CCE30930.1 245 IKHLNLRGC 253
                 79*****99 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.25
       LRR_6   2 nthLteLdLsg 12 
                 n +L +L+L+g
  CCE30930.1 295 NEKLVHLNLTG 305
                 899******97 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.016
       LRR_6   1 snthLteLdLsgNd.IgDeGaea 22 
                 s++ L++ ++s++  +   G++a
  CCE30930.1 320 SCPQLESFNVSWCRkVEARGIKA 342
                 5899*********9999999887 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0031
       LRR_6   3 thLteLdLsgNd.IgDeGa 20 
                 ++L++LdLs +  ++++G+
  CCE30930.1 415 RKLRHLDLSRCIhLSNSGV 433
                 79********977777776 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.15
       LRR_6   8 LdLsgNd.IgDeGaeaL 23 
                 L+Lsg++ ++++ +e +
  CCE30930.1 446 LQLSGCKlLTNAAVEPI 462
                 99*****9999888876 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 1.8
       LRR_6   4 hLteLdLsg 12 
                  Lt+L+L +
  CCE30930.1 468 RLTHLELED 476
                 699999976 PP

  == domain 8  score: 9.1 bits;  conditional E-value: 0.00048
       LRR_6   4 hLteLdLsgNd.IgDeGae 21 
                 +L++L++s+++ I+D G+ 
  CCE30930.1 497 TLEHLSISHCEgINDLGML 515
                 79*************9985 PP

  == domain 9  score: 2.6 bits;  conditional E-value: 0.06
       LRR_6   1 snthLteLdLsgNdIgDeGae 21 
                 s+++L++ d+    I+D  ++
  CCE30930.1 520 SCCKLKSIDMDNTRISDLSLI 540
                 69***********9*997665 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.2   6.5e+03      22      31 ..     295     304 ..     290     314 .. 0.73
   2 ?   -0.3   0.1      0.54   1.6e+03      19      30 ..     318     329 ..     296     333 .. 0.59
   3 ?    0.7   0.1      0.26   7.8e+02      23      38 ..     374     389 ..     348     393 .. 0.75
   4 !    8.0   0.1    0.0013       3.9       2      37 ..     416     455 ..     415     458 .. 0.73
   5 ?    4.8   0.2     0.013        40       3      42 ..     443     480 ..     441     482 .. 0.73
   6 !   20.1   0.1   2.1e-07   0.00062       3      40 ..     498     538 ..     497     542 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.2
                 -TT--EEE-. CS
       LRR_4  22 lpnLkeLdLs 31 
                 + +L +L+L+
  CCE30930.1 295 NEKLVHLNLT 304
                 6678888884 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.54
                 HHH-TT--EEE- CS
       LRR_4  19 leklpnLkeLdL 30 
                  e++p+L+++++
  CCE30930.1 318 SESCPQLESFNV 329
                 225999999887 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.26
                 TT--EEE-.-S----- CS
       LRR_4  23 pnLkeLdLsgNnlitd 38 
                  nL+ L L g+ ++td
  CCE30930.1 374 NNLERLVLCGCIQLTD 389
                 5677777777766655 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0013
                 S--EEE--SS.---E-S-...HHH.-TT--EEE-.-S---- CS
       LRR_4   2 nLevLdLsnN.qltdipl...lek.lpnLkeLdLsgNnlit 37 
                 +L++LdLs + +l+  ++   ++   p+L+ L Lsg+ l+t
  CCE30930.1 416 KLRHLDLSRCiHLSN-SGvgtIGHaVPDLEGLQLSGCKLLT 455
                 8*******9556664.4436655559********9996655 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.013
                 --EEE--SS---E-S-....HHH-TT--EEE-.-S-----GGGG CS
       LRR_4   3 LevLdLsnNqltdipl....leklpnLkeLdLsgNnlitdldeL 42 
                 Le L Ls+++l +       l++ p L++L L +     dl++L
  CCE30930.1 443 LEGLQLSGCKLLTNAAvepiLASTPRLTHLEL-E-----DLEGL 480
                 88899999975554454777779********9.5.....66665 PP

  == domain 6  score: 20.1 bits;  conditional E-value: 2.1e-07
                 --EEE--SS.---E-S-...HHH-TT--EEE-.-S-----GG CS
       LRR_4   3 LevLdLsnN.qltdipl...leklpnLkeLdLsgNnlitdld 40 
                 Le+L++s++  + d++    le++ +Lk++d+ +N++i+dl+
  CCE30930.1 498 LEHLSISHCeGINDLGMlpvLESCCKLKSIDM-DNTRISDLS 538
                 9*******64455555544388**********.999***996 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.5   7.3e-10   2.2e-06       1      39 [.     175     213 ..     175     221 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 7.3e-10
                 -HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT CS
       F-box   1 ftlsrLPsevlrhILerLplsdllalrrVSkgwrilids 39 
                 +++ +LP+e+   I ++L +++l+ ++rVS+++++l+ +
  CCE30930.1 175 PSWEELPNEIRVRIVSFLRPKELVQASRVSRSFHKLCFD 213
                 58*********************************9966 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.13   3.8e+02       3      10 ..     246     253 ..     244     280 .. 0.83
   2 ?   -0.1   0.0      0.79   2.4e+03       1       9 [.     297     305 ..     297     322 .. 0.73
   3 ?    1.3   0.0      0.28   8.4e+02       1      11 [.     323     333 ..     323     350 .. 0.82
   4 ?    2.8   0.0     0.091   2.7e+02       1      20 [.     375     392 ..     375     395 .. 0.84
   5 !    9.8   0.0   0.00046       1.4       1      15 [.     416     428 ..     416     440 .. 0.82
   6 ?   -0.3   0.3      0.91   2.7e+03       1       7 [.     468     474 ..     442     489 .. 0.54
   7 ?    5.2   0.1     0.015        45       2      13 ..     498     509 ..     497     522 .. 0.82
   8 ?    0.2   0.0      0.65   1.9e+03       1      15 [.     523     537 ..     523     544 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.13
       LRR_1   3 rhLdLsnn 10 
                 +hL+L+++
  CCE30930.1 246 KHLNLRGC 253
                 9*****99 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.79
       LRR_1   1 nLrhLdLsn 9  
                 +L hL+L++
  CCE30930.1 297 KLVHLNLTG 305
                 799***965 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.28
       LRR_1   1 nLrhLdLsnnp 11 
                 +L++ ++s+++
  CCE30930.1 323 QLESFNVSWCR 333
                 59********8 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.091
       LRR_1   1 nLrhLdLsnnpllglppnsf 20 
                 nL++L L++++  +l+++++
  CCE30930.1 375 NLERLVLCGCI--QLTDDAL 392
                 8*********9..8877766 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.00046
       LRR_1   1 nLrhLdLsnnpllgl 15 
                 +LrhLdLs+++   l
  CCE30930.1 416 KLRHLDLSRCIH--L 428
                 7*********94..3 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.91
       LRR_1   1 nLrhLdL 7  
                 +L+hL L
  CCE30930.1 468 RLTHLEL 474
                 2444444 PP

  == domain 7  score: 5.2 bits;  conditional E-value: 0.015
       LRR_1   2 LrhLdLsnnpll 13 
                 L+hL +s++ ++
  CCE30930.1 498 LEHLSISHCEGI 509
                 9********974 PP

  == domain 8  score: 0.2 bits;  conditional E-value: 0.65
       LRR_1   1 nLrhLdLsnnpllgl 15 
                 +L+++d+ n ++++l
  CCE30930.1 523 KLKSIDMDNTRISDL 537
                 7******99988655 PP

>> PRANC  PRANC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.5e-05      0.14      70      93 ..     175     198 ..     149     201 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.5e-05
       PRANC  70 slWnlLPiEIkykIleyLndkdLk 93 
                  +W  LP+EI+  I+++L  k+L 
  CCE30930.1 175 PSWEELPNEIRVRIVSFLRPKELV 198
                 58*****************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 5309.31
//
Query:       CCE30931.1  [L=1188]
Description: related to serine/threonine-protein kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-57  194.7   0.0    2.6e-57  194.2   0.0    1.2  1  Pkinase         Protein kinase domain
    1.7e-21   76.7   0.0    2.7e-21   76.0   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    1.3e-06   28.0   0.0    2.2e-06   27.2   0.0    1.4  1  Kinase-like     Kinase-like
    0.00075   18.5   0.0     0.0012   17.9   0.0    1.2  1  Haspin_kinase   Haspin like kinase domain
     0.0039   17.1   0.1      0.019   14.9   0.0    2.0  1  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.038   13.6   0.1      0.073   12.7   0.1    1.4  1  RIO1            RIO1 family
      0.088   11.6   0.0       0.14   10.9   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.2   0.0     1e-60   2.6e-57       1     263 [.     926    1183 ..     926    1184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 194.2 bits;  conditional E-value: 1e-60
                  EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH......HHHHHHHHHHHHHS.....CTTB--EEEEEEESSEEEEEE..E--TTEB CS
     Pkinase    1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke......kkvlrEikilkklk.....hpnivrlyevfeekdelylvl..eyvegge 84  
                  y+ le +G+G++G+V  a++k++gk+v++K + k+++  ++        +v  Ei++l  l+     hpniv++ ++fe++ ++y+ +    ++g +
  CCE30931.1  926 YSILEDMGQGAYGQVKLARSKSSGKKVVLKYVTKRRILVDTWtrdrklGTVPLEIHVLDYLRkpefrHPNIVEMEGFFEDDVNYYIEMapHGLPGMD 1022
                  678899*****************************997776667777899********988777788*************99999655114567888 PP

                  HHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTT.EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHH CS
     Pkinase   85 ladllerkgslseeeakkiakqilegleylHskg.iiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvD 179 
                  l+d++e + +++e+e+++++ q+++++++lH k  i+HrD+K+eN+ +d +g++K++DFG a+ ++s+  ++ fvgt +Y APEvl +++y +k+ D
  CCE30931.1 1023 LFDYIELRANMEEAECRSMFVQVAKAIHFLHTKAlIVHRDIKDENVVLDGEGNIKLIDFGSAAYIKSGP-FDVFVGTIDYAAPEVLAGRPYgGKEQD 1118
                  ******99***********************6665********************************99.*********************9***** PP

                  HHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase  180 vWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpy 263 
                  vW+lG++ly+++++++pf+           +d+          ++ +l+ + ++s+e +dl++++l++d k+Rl +ee++qhp+
  CCE30931.1 1119 VWALGILLYTIIYKENPFY----------SIDE---------IMDRDLRVPFTMSDESIDLIRRMLNRDVKDRLHIEEVVQHPW 1183
                  *******************..........5555.........23458889999******************************9 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0     1e-24   2.7e-21       3     257 ..     928    1180 ..     926    1181 .. 0.79

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 1e-24
                   EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST.......TSSHHHHHHHHHHHHHHH.....TS-BTTB--EEEEEESSSSEEEEEE--TTE CS
  Pkinase_Tyr    3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke.......eateeekeelleeakimk.....klkhpnivkllgvctkeepllivteyvkgG 86  
                   + +++G+Ga+G+V  ++ k+    +  kV++K +++        +++++   +  e++++      +++hpniv++ g+  ++ +++i  e++++G
   CCE30931.1  928 ILEDMGQGAYGQVKLARSKS----SGKKVVLKYVTKrrilvdtWTRDRKLGTVPLEIHVLDylrkpEFRHPNIVEMEGFFEDDVNYYI--EMAPHG 1017
                   56899*************95....444555555433122221133444455555688877522233458************8888776..666666 PP

                   ....BHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHH CS
  Pkinase_Tyr   87 ....dLlkfLrkkekekltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEsl 177 
                       dL ++++ +  ++++  +  s+ +qvAk++++L++k  +vHrd+   Nv+l+ +  +k+ DfG a  i    +    +     + + apE+l
   CCE30931.1 1018 lpgmDLFDYIELR--ANMEEAECRSMFVQVAKAIHFLHTKAlIVHRDIKDENVVLDGEGNIKLIDFGSAAYI----KSGPFDVFVGTIDYAAPEVL 1107
                   6667******998..99*********************999679****************************....33444556679********* PP

                   HHSEEE.HHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr  178 kekkft.sksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257 
                     + +  ++ DvW+ G+ll+ i+   e+p+ ++++         ++ l+ p ++++e  +l+++ +++d ++R +++e+v+
   CCE30931.1 1108 AGRPYGgKEQDVWALGILLYTIIY-KENPFYSIDEIM-------DRDLRVPFTMSDESIDLIRRMLNRDVKDRLHIEEVVQ 1180
                   ***9862679************98.788887775433.......4567788888999999999999999999999999886 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   8.6e-10   2.2e-06     138     288 .]    1031    1172 ..    1021    1172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 8.6e-10
  Kinase-like  138 hkkletiarlllTlqlirlaanLqakg.lvhgkftvdnllldekgglmlggftaLvragtkvvl.seve.kgfaPpEllgsrggytrknktkmthk 230 
                   ++ +e  +r +  +q+ + +  L+ k  +vh +++ +n++ld +g ++l +f++     ++++    v    +a pE+l+ r  y+         +
   CCE30931.1 1031 ANMEEAECRSMF-VQVAKAIHFLHTKAlIVHRDIKDENVVLDGEGNIKLIDFGSAAY-IKSGPFdVFVGtIDYAAPEVLAGRP-YGG-------KE 1116
                   567888899999.99999999**9997369**********************98654.344553223333679******9844.555.......46 PP

  Kinase-like  231 ldaWqlGlviyriwclklPltlateeakeewkfklckkipekvkaLlkkfLqlsqedR 288 
                    d+W+lG+  y i   + P+  + e +  +  ++    ++++   L++++L+++++dR
   CCE30931.1 1117 QDVWALGILLYTIIYKENPFYSIDEIMDRD--LRVPFTMSDESIDLIRRMLNRDVKDR 1172
                   7**********************9999998..77777******************998 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.7e-07    0.0012     202     254 ..    1032    1084 ..     980    1093 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.7e-07
  Haspin_kinase  202 lkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlkls 254 
                       + +++ s+f q++k ++   tk    HRd++ +n+ +d ++n+ lid+  +
     CCE30931.1 1032 NMEEAECRSMFVQVAKAIHFLHTKALIVHRDIKDENVVLDGEGNIKLIDFGSA 1084
                     4456799******************************************9765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   7.5e-06     0.019     162     198 ..    1051    1086 ..    1022    1088 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.5e-06
                  S.SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH  162 g.elptvllHgDlhpgNllvdpddgrvtGviDfedagl 198 
                    + ++ ++H+D++  N+++d + g +  +iDf+ a +
  CCE30931.1 1051 FlHTKALIVHRDIKDENVVLDGE-GNI-KLIDFGSAAY 1086
                  2567899**************44.444.49****9876 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   2.8e-05     0.073      98     152 ..    1029    1084 ..    1020    1090 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.8e-05
                  HHHCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTTE CS
        RIO1   98 lkdveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQa 152 
                  l+   ee+e ++++ +v ++++ l ++a +vH D+ + Nv++d + ++ +ID++ a
  CCE30931.1 1029 LRANMEEAECRSMFVQVAKAIHFLHTKALIVHRDIKDENVVLDGEgNIKLIDFGSA 1084
                  5555568999********************************9988******9865 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.6e-05      0.14     311     387 ..    1041    1108 ..    1028    1131 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.6e-05
  Pkinase_fungal  311 alrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlk 387 
                       + ++ k+   L++ka i+HrDi  +N+++      ge +  LiD+  a  ++           +GT+ + a evl 
      CCE30931.1 1041 MFVQVAKAIHFLHTKALIVHRDIKDENVVLD-----GEGNIKLIDFGSAAYIKS--GPF--DVFVGTIDYAAPEVLA 1108
                      56677788889*******************9.....888999999999988883..332..3567777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 8232.34
//
Query:       CCE30932.1  [L=1092]
Description: uncharacterized protein CPUR_04783 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-19   70.5   5.5    2.7e-19   69.6   5.5    1.4  1  zinc_ribbon_16  Zinc-ribbon like family
    4.3e-07   29.4   4.5    4.3e-07   29.4   4.5    2.1  2  Zn_ribbon_17    Zinc-ribbon, C4HC2 type
  ------ inclusion threshold ------
        2.3    7.7   4.9        3.7    7.1   4.9    1.2  1  SR-25           Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> zinc_ribbon_16  Zinc-ribbon like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   5.5   4.5e-23   2.7e-19      35     123 ..    1000    1082 ..     970    1084 .. 0.85

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 4.5e-23
  zinc_ribbon_16   35 ksksslcprcskplpkcavcglslGtsdvtnkdskrksvvkevssskkrfekwlsfclscghgahashakewfsthsicpvadcnceck 123 
                      ++    cp+c+++lp+c vc+  +G    ++ d   k+ v   s   +  +++ +fcl c+h+ h +ha++wf++h  cpv++c c+c+
      CCE30932.1 1000 INAGISCPNCGRQLPRCVVCLEIVGV---PRSD---KKSVDRGSAAVRTAGRFPTFCLRCEHVLHLDHARQWFERHVECPVPECRCKCN 1082
                      455568**************998885...5666...455777788888999*************************************7 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.49   2.9e+03       2      12 ..     935     945 ..     934     948 .. 0.76
   2 !   29.4   4.5   7.3e-11   4.3e-07      19      56 ..    1048    1084 ..    1039    1086 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.49
  Zn_ribbon_17   2 ellksCayCel 12 
                   +++  C+yC+ 
    CCE30932.1 935 QIALRCVYCDA 945
                   56678****85 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 7.3e-11
  Zn_ribbon_17   19 vlcgvCeHvlHasCarewfenddlaeCps.GCGckclek 56  
                    ++c +CeHvlH + ar+wfe     eCp+  C ckc ++
    CCE30932.1 1048 TFCLRCEHVLHLDHARQWFERHV--ECPVpECRCKCNFR 1084
                    79*******************99..****99*****986 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.9   0.00063       3.7      56      86 ..     957     987 ..     903     995 .. 0.50

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00063
       SR-25  56 kkkkrrrssssssssssssssssssssssss 86 
                 + + + + +s++ sssssssss+    ssss
  CCE30932.1 957 AARLAAAGASTTASSSSSSSSSPKPPPSSSS 987
                 2222222233333333333333222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1092 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 7424.45
//
Query:       CCE30933.1  [L=323]
Description: uncharacterized protein CPUR_04784 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-33  114.3   7.6    3.6e-33  114.3   7.6    2.4  2  Efg1           rRNA-processing protein Efg1
  ------ inclusion threshold ------
      0.038   14.4   1.1      0.038   14.4   1.1    2.5  3  PPV_E1_N       E1 Protein, N terminal domain
        0.3   10.9   3.2       0.38   10.5   1.4    2.0  2  DUF4549        Domain of unknown function (DUF4549)
        4.3    7.2   6.4        2.5    8.0   0.4    2.8  3  Rad50_zn_hook  Rad50 zinc hook motif


Domain annotation for each model (and alignments):
>> Efg1  rRNA-processing protein Efg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   7.6     8e-37   3.6e-33       2     114 .]      53     165 ..      52     165 .. 0.99
   2 ?   -2.5   2.4       1.4   6.2e+03      26      67 ..     254     295 ..     241     316 .. 0.47

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 8e-37
                 HHHHHHHHHHHS-SS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH CS
        Efg1   2 kkkiRdlkRlLakkekLpaevreekereLkaleaeleeaekkekekklakkYhkvrFfErkKatRklkrlkkqleeledeeekeelekkleelevdlnY 100
                 kk+iR++ RlL+++++Lpa+v+++ +reL++l+ ++++++ +++++++++kYh+vrFfErkKa+R +k+lk+++e++ d+++ e+l+++l+ +evd +Y
  CCE30933.1  53 KKRIRTIARLLQRNTDLPAHVQNDLQRELATLKTTVADKSIHKRRSAMISKYHMVRFFERKKASRLVKQLKRKIEQSPDSDDVENLKRQLHIAEVDEAY 151
                 9************************************************************************************************** PP

                 HHHS-TTS----SS CS
        Efg1 101 vlyyPklekYisLy 114
                 ++y+P+le+Y sLy
  CCE30933.1 152 TIYHPHLEPYRSLY 165
                 *************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Efg1  26 kereLkaleaeleeaekkekekklakkYhkvrFfErkKatRk 67 
                  ++ L+  +a ++++++++ke k +    + +  E+  ++R+
  CCE30933.1 254 SKQDLAGRDAAVKSNHDAKKEAKTTIPSGRTQTGEKTPLNRR 295
                 445555555555555555555544443434444444444333 PP

>> PPV_E1_N  E1 Protein, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.1   8.4e-06     0.038      61      96 ..     110     145 ..      72     158 .. 0.79
   2 ?   -1.7   0.1      0.83   3.7e+03      32      37 ..     186     191 ..     164     235 .. 0.54
   3 ?   -2.7   0.1       1.7   7.6e+03     103     115 ..     294     306 ..     288     315 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.4e-06
    PPV_E1_N  61 qeaeesekalqvLKRKylkSPksrdvaelSPrLeai 96 
                  e+++ ++ +++LKRK  +SP+s dv +l  +L+  
  CCE30933.1 110 FERKKASRLVKQLKRKIEQSPDSDDVENLKRQLHIA 145
                 467788899********************9999755 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.83
    PPV_E1_N  32 eesend 37 
                 ee +nd
  CCE30933.1 186 EEAKND 191
                 222222 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.7
    PPV_E1_N 103 kkakrrLfeseds 115
                 ++ +rrL ++ ++
  CCE30933.1 294 RRERRRLMREAEA 306
                 5666666654222 PP

>> DUF4549  Domain of unknown function (DUF4549)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0027        12      49      86 ..      46      82 ..      31      92 .. 0.79
   2 ?   10.5   1.4   8.5e-05      0.38      12      89 ..      72     146 ..      67     158 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0027
     DUF4549 49 kdvsyfrrerelvlkkalqvaeakPlviqadvlkrele 86
                 d   f ++r +++ ++lq ++  P  +q d+ +rel 
  CCE30933.1 46 EDRASFAKKRIRTIARLLQRNTDLPAHVQNDL-QRELA 82
                467789999********************995.67765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 8.5e-05
     DUF4549  12 elekeLakeleeLkteieekevlkgkkskslssvslpkdvsyfrrerelvlkkalqva.eakPlviqadvlkrelescl 89 
                 +++++L++el+ Lkt + +k + k++     + +s  + v +f r++   l k l+ + e  P     + lkr+l+++ 
  CCE30933.1  72 HVQNDLQRELATLKTTVADKSIHKRR----SAMISKYHMVRFFERKKASRLVKQLKRKiEQSPDSDDVENLKRQLHIAE 146
                 57899****************99655....55677888899**999988877777654266677777777888777765 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.7   1.2e+04      39      46 ..      75      82 ..      70      87 .. 0.53
   2 ?    8.0   0.4   0.00055       2.5      29      50 ..     110     131 ..     108     132 .. 0.90
   3 ?    1.5   0.5     0.061   2.7e+02      28      49 ..     291     312 ..     289     314 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.7
                   HHHHHHHH CS
  Rad50_zn_hook 39 kelqskle 46
                   ++lq +l 
     CCE30933.1 75 NDLQRELA 82
                   44444444 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00055
                    E-HHHHHHHHHHHHHHHHHHH. CS
  Rad50_zn_hook  29 ldeehrseLikelqsklerlpe 50 
                    ++++++s+L+k+l+ k+e+ p+
     CCE30933.1 110 FERKKASRLVKQLKRKIEQSPD 131
                    88999*************9986 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.061
                    EE-HHHHHHHHHHHHHHHHHHH CS
  Rad50_zn_hook  28 eldeehrseLikelqsklerlp 49 
                    +l++ +r++L++e +++ ++  
     CCE30933.1 291 PLNRRERRRLMREAEAEKDSDD 312
                    899999**********998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1564  (0.087233); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2389.54
//
Query:       CCE30934.1  [L=372]
Description: uncharacterized protein CPUR_04785 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.01   16.5   0.0      0.025   15.3   0.0    1.8  1  dsrm          Double-stranded RNA binding motif
      0.055   13.7   0.0          4    7.8   0.0    3.0  3  DND1_DSRM     double strand RNA binding domain from DEAD END 
       0.25   10.7   0.1       0.39   10.0   0.1    1.2  1  FtsK_SpoIIIE  FtsK/SpoIIIE family


Domain annotation for each model (and alignments):
>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   4.1e-06     0.025      27      65 ..      89     139 ..      59     141 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.1e-06
                 TSSSEEEEEEEEE..TTEEEEEEEE..........SSHHHHHHHHHHHHHH CS
        dsrm  27 phslpkFvvtvkv..ngklygsGvg..........snKKeAeqsAAedale 65 
                  h +p++++ +++   gk ++ G g          ++KK A+q AA++al 
  CCE30934.1  89 GHFEPRWQCLCEIrsVGKFPRLGYGmsttqpapwfQSKKNAKQFAAKQALD 139
                 355678888777755455555555566666777778*************97 PP

>> DND1_DSRM  double strand RNA binding domain from DEAD END PROTEIN 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.28   1.7e+03       4      22 ..      60      78 ..      57      86 .. 0.86
   2 ?    7.8   0.0   0.00068         4      53      79 ..     115     141 ..     102     142 .. 0.83
   3 ?    1.7   0.0      0.05     3e+02      60      79 ..     333     352 ..     323     353 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.28
   DND1_DSRM  4 vqlLeelCeknkwgsPvYe 22
                v+lL +  +++++g+P ++
  CCE30934.1 60 VSLLLQSTQSRRLGPPTFT 78
                788889999*******997 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00068
   DND1_DSRM  53 vifmpdklastkeeAkelaAeqvLeaL 79 
                  + +p  + ++k++Ak+ aA+q+L  L
  CCE30934.1 115 STTQPAPWFQSKKNAKQFAAKQALDFL 141
                 4677889999*************9876 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.05
   DND1_DSRM  60 lastkeeAkelaAeqvLeaL 79 
                  a+++++Ak  +Ae+vL  L
  CCE30934.1 333 GAESPSQAKMRVAEEVLTWL 352
                 578899***********987 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   6.6e-05      0.39      97     125 ..     337     365 ..     327     370 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 6.6e-05
                   S-B-SHHHHHHHHHHHHHHHHHHHHHHHH CS
  FtsK_SpoIIIE  97 avatdperalraleeLvkemeeryalfre 125
                   ++ + +  a ++l +L++em++r+a+f++
    CCE30934.1 337 PSQAKMRVAEEVLTWLEEEMQRRQAVFQN 365
                   45556777889***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2722.26
//
Query:       CCE30935.1  [L=366]
Description: related to tRNA 2`-phosphotransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-60  204.6   0.0    1.6e-60  204.3   0.0    1.1  1  PTS_2-RNA        RNA 2'-phosphotransferase, Tpt1 / KptA famil


Domain annotation for each model (and alignments):
>> PTS_2-RNA  RNA 2'-phosphotransferase, Tpt1 / KptA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.3   0.0   8.8e-65   1.6e-60       2     181 .]     107     294 ..     106     294 .. 0.93

  Alignments for each domain:
  == domain 1  score: 204.3 bits;  conditional E-value: 8.8e-65
   PTS_2-RNA   2 revqlskaLsyiLRhgaekegLkiredGyvkvedlLelpklkslkvtleeikevVesndKqRFelv.el.........eelliranqghsikkvessel 90 
                 revq+skaLs++LRh+a+++g+ ++ +G+++++++L++  l+sl+v+l eik++Ve+n+KqRF+l+ +          +++liranqghs+ +v + ++
  CCE30935.1 107 REVQISKALSRLLRHQAQNAGIDLDGEGFARLDQVLQWGPLNSLNVSLTEIKSIVETNAKQRFALKpKSpvsedsssaRDYLIRANQGHSL-AV-DPTA 203
                 79**************************************************************996559******9744**********7.33.4566 PP

   PTS_2-RNA  91 llepi.esaeelpevvvHgTylkawesilasggLkrmsrnhihlatglpgekevisgmrksaevliyidvekaladgikfyvsengviLteG 181
                 + +pi   ++++p+ v+HgTy+++w++il+sggLk+m+r hih++ ++  e++ +sgmrk+ae+li id+e+ l +gi++++s+ngviLt+G
  CCE30935.1 204 MFTPInVGDADFPARVIHGTYFAFWDAILTSGGLKPMNRGHIHCSDKTL-EEGALSGMRKDAELLIEIDLERSLGEGIAWWRSQNGVILTDG 294
                 89***6555669**********************************976.789*************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2816.68
//
Query:       CCE30936.1  [L=1149]
Description: uncharacterized protein CPUR_04787 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 8005.86
//
Query:       CCE30937.1  [L=806]
Description: related to dual-specificity MAP kinase phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-23   83.0   0.0    2.5e-21   75.9   0.0    2.3  1  DSPc           Dual specificity phosphatase, catalytic domain
  ------ inclusion threshold ------
       0.02   14.4   0.0      0.033   13.7   0.0    1.2  1  Y_phosphatase  Protein-tyrosine phosphatase
       0.14   11.9   0.0       0.25   11.0   0.0    1.4  1  CDKN3          Cyclin-dependent kinase inhibitor 3 (CDKN3)


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   4.2e-25   2.5e-21       1     132 [.     320     495 ..     320     496 .. 0.78

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 4.2e-25
                 EEEEECCHHCHHHHHHHTCSEEEEESSSSSEC................ECCTTTTSEEEEECCES.................................. CS
        DSPc   1 lylgskstaslallsklgitlvinvtkevpna................nalkkseieklripved.................................. 49 
                 +yl+ ++ta     ++ ++++vinv++ev+n+                                +                                  
  CCE30937.1 320 VYLYLEPTAD----EASQFDVVINVAREVSNPfdaggseaqnqsvfssG---------------Egctsdtamtdassaialeplengsletpatskak 399
                 6888888888....88889999999999988855554444433333330...............13444455555666666666666777777777777 PP

                 ............STTSCCGGGHHHHHHHHHHHHHTT-EEEEEESSSSSHHHHHHHHH.HHHHHTSCHHHHHHHHHHHSTT-SSTHHHHHHHHHHHH CS
        DSPc  50 ............ehetkiskyleeavefidkakqkgkkvlVHCqaGisRSatliiaY.lmktknlslneayeflkerrpaispnagfirqLleyek 132
                             +h+t+i+++l ++ ++i++ +++g +vl+HCq G sRSa+liiaY l k+  ls+n+ay+  + ++ +ispn++++ +L +++k
  CCE30937.1 400 rlrapeyihipwDHNTDIAPDLMNLCKIIEDRTKNGSRVLIHCQQGASRSASLIIAYgLYKSPDLSVNDAYYAAQAKSRWISPNMKLMYSLQDFQK 495
                 77777788889999*******************************************55567799**************************99986 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.6e-06     0.033     136     190 ..     404     455 ..     376     466 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.6e-06
                    EEEEESSS-SSSSGSCCHHHHHHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHH CS
  Y_phosphatase 136 kqlqytnWpdhgvpesaksllklirkvekskeaksgpvvVhCsaGvgRtgtfval 190
                     ++ +  W ++   + a +l++l++ +e ++ ++ + v++hC +G++R+++++ +
     CCE30937.1 404 PEYIHIPWDHNT--DIAPDLMNLCKIIEDRT-KNGSRVLIHCQQGASRSASLIIA 455
                    567777887555..33344555555555555.5669***************9976 PP

>> CDKN3  Cyclin-dependent kinase inhibitor 3 (CDKN3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.1e-05      0.25     113     166 ..     418     468 ..     407     470 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.1e-05
                 ---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHH CS
       CDKN3 113 tpdiascleimeelatclknyrktlihcygglgrsclvaaclllylsdsispeq 166
                 +pd+   ++i+e+ +   kn  + lihc  g  rs+ +  +  ly s  +s ++
  CCE30937.1 418 APDLMNLCKIIEDRT---KNGSRVLIHCQQGASRSASLIIAYGLYKSPDLSVND 468
                 699999999999976...9****************9989999999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 5388.68
//
Query:       CCE30938.1  [L=414]
Description: related to HUT1-weak similarity to human UDP-galactose transporter related isozyme 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-42  146.0   6.9      2e-42  145.4   6.9    1.2  1  UAA             UAA transporter family
    5.1e-10   39.6  27.1    1.5e-06   28.4   8.2    3.4  3  EamA            EamA-like transporter family
    1.2e-07   31.2   0.5     0.0007   18.9   0.1    2.2  2  Nuc_sug_transp  Nucleotide-sugar transporter
     0.0015   17.9   5.2      0.062   12.6   0.4    2.3  2  TPT             Triose-phosphate Transporter family
  ------ inclusion threshold ------
       0.08   11.9   4.8        1.3    7.9   0.2    2.2  2  CRT-like        CRT-like, chloroquine-resistance transporter-


Domain annotation for each model (and alignments):
>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4   6.9   5.6e-46     2e-42       2     298 ..      54     386 ..      53     389 .. 0.83

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 5.6e-46
         UAA   2 lllavslvfvgccsnvvllElivkeepkafg........nlltfvqflfvalegllesid.....ilkkrkiPlktYvilvalffitsvl....nneal 83 
                 l++ v +++ +++++++l+E++ ++ +++           +l+ +q lf a++g l  i         ++ iP ++ +   al  its l     + +l
  CCE30938.1  54 LVISVVGIYASFLTWAYLQEKLTTTPHGPPSaperwhfpVFLNTIQSLFAATVGSLYLIAstprgAPIPPIIPSRRILAPLALVAITSSLaspfGYASL 152
                 78999*******************8777645899*9999*******999988887767665555447888888888776555555554441222799** PP

         UAA  84 kydisvPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdk....kedskeslnkfllGiallvlallldavlglvqeklyk 178
                 +  i + +  +++s+kl+pvm+l i + ++r+ l +yl+vl +t+Gv +ftl s+++k    k+ s+ +  ++++G++ll ++ll+d++++ +q+++++
  CCE30938.1 153 AH-IDYITFLLAKSCKLLPVMFLHITVFRRRFPLYKYLVVLAVTAGVAVFTLHSSSKKhstkKSGSVDEAANMTWGLLLLGINLLFDGLTNSTQDHIFQ 250
                 *9.*************************************************99888888888888889999*************************** PP

         UAA 179 kygkhsk.ealfyshllslplfl................llqgellsavkflsesedval...........lslpsklfylllnvltqyvcikgVlili 249
                  +      +++  ++++s++++                  l  +++                            p  + ++l ++++++v++ +++++ 
  CCE30938.1 251 SFRPYGGpQMMCANNMMSTLVTGlyllasprlvatgvgeWLGMDVVG------------SageltaamefmRRYPAVWRDVLGFAVCGAVGQVFIFYTL 337
                 **999887999999999887543354456654444444422222222............133344455555699************************* PP

         UAA 250 sefgaltvtlvltlRKfvslllSillFknpltlqhlvgtllVflgllly 298
                 s+f++  +++v+ +RK+ +++lS++ F++ lt  +++g+ lVf+g+ ++
  CCE30938.1 338 STFSSVLLVTVTVTRKMFTMILSVVAFGHRLTHMQWLGVGLVFGGIGVE 386
                 *********************************************9876 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0022       7.7      90     119 ..      48      77 ..      45      79 .. 0.87
   2 !   12.5   7.1   3.5e-05      0.13      30     135 ..      92     201 ..      87     203 .. 0.86
   3 !   28.4   8.2   4.3e-10   1.5e-06      64     132 ..     316     383 ..     225     385 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0022
        EamA  90 sasnaslitslePvftlilsvlllgekltl 119
                 +a+++ l++s++ +++ +l +++l+eklt 
  CCE30938.1  48 EAGVVQLVISVVGIYASFLTWAYLQEKLTT 77 
                 688999999999999999999999999985 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.5e-05
        EamA  30 pltltfvrfliagill...liiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllg 124
                 p++l+++++l+a+ +    li + +++ ++ + ++ + +l+ l l ++ + la  + + +l +++  +  l+ s   + +++l + +++ ++ l+++l 
  CCE30938.1  92 PVFLNTIQSLFAATVGslyLIASTPRGAPIpPIIPSRRILAPLALVAITSSLASPFGYASLAHIDYITFLLAKSCKLLPVMFLHITVFRRRFPLYKYLV 190
                 6778888888666554222455555555558***********99999999************************************************* PP

        EamA 125 ivlillGvlli 135
                 ++ + +Gv++ 
  CCE30938.1 191 VLAVTAGVAVF 201
                 ********987 PP

  == domain 3  score: 28.4 bits;  conditional E-value: 4.3e-10
        EamA  64 wllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGv 132
                 w  +l ++ ++++++++++fy l++ s+   + +t +  +ft+ilsv+ +g +lt +q+lg++l++ G+
  CCE30938.1 316 WRDVLGFA-VCGAVGQVFIFYTLSTFSSVLLVTVTVTRKMFTMILSVVAFGHRLTHMQWLGVGLVFGGI 383
                 33344444.899********************************************************8 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1     2e-07    0.0007      98     184 ..     146     233 ..     124     244 .. 0.81
   2 !   10.6   0.0   6.3e-05      0.23     112     163 ..     346     399 ..     303     410 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2e-07
  Nuc_sug_transp  98 nllyvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseesekaaaaa.keensvlGliavla 184
                      + y +l ++d  t+ ++   k+l   ++ +++ +r++  +++l +l ++aGva+  l+++++++s+k++ +  ++ n   Gl  + +
      CCE30938.1 146 PFGYASLAHIDYITFLLAKSCKLLPVMFLHITVFRRRFPLYKYLVVLAVTAGVAVFTLHSSSKKHSTKKSGSVdEAANMTWGLLLLGI 233
                     56799****************************************************9999888877766554155677778866555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 6.3e-05
  Nuc_sug_transp 112 yqvtyqlkilttalfsvllLkrklskkqWlslllLvaGval...vqlkqkesees 163
                      +vt   k++ t ++sv+  +++l+++qWl + l++ G+ +   +  ++k+++e+
      CCE30938.1 346 VTVTVTRKMF-TMILSVVAFGHRLTHMQWLGVGLVFGGIGVeagIARREKMAKEA 399
                     3456666655.678999999****************9996521133333333333 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.5   0.00064       2.3     218     288 ..     130     200 ..      87     205 .. 0.67
   2 !   12.6   0.4   1.7e-05     0.062      64     133 ..     315     384 ..     235     388 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00064
         TPT 218 vllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvfl 288
                 +l+ l l ++   l +   y+ L+++  +t+ +a ++K   v+ l + vf+ +  l + + +  +++Gv +
  CCE30938.1 130 ILAPLALVAITSSLASPFGYASLAHIDYITFLLAKSCKLLPVMFLHITVFRRRFPLYKYLVVLAVTAGVAV 200
                 44445555555555666667777777777777777777777777777777777777777776666677655 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.7e-05
         TPT  64 flkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGva 133
                 +++ +l  a++ ++g+v+   +ls+ +     tv  +  +Ft ils + +g++l+ + +l +  + gG+ 
  CCE30938.1 315 VWRDVLGFAVCGAVGQVFIFYTLSTFSSVLLVTVTVTRKMFTMILSVVAFGHRLTHMQWLGVGLVFGGIG 384
                 6788999999999999999999999999999999999999999999999999999999999999999986 PP

>> CRT-like  CRT-like, chloroquine-resistance transporter-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2   0.00036       1.3      99     160 ..     161     231 ..      93     273 .. 0.77
   2 ?    5.8   0.9    0.0016       5.8      79     138 ..     327     386 ..     312     399 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00036
    CRT-like  99 llnqaiipi.tllasllllkerysliqylGAlviilgvvvvlipsllg........essegnklvfnllll 160
                 ll +++  +  +++ + + ++r+ l++yl  l +++gv+v    s +         + +e  ++ + llll
  CCE30938.1 161 LLAKSCKLLpVMFLHITVFRRRFPLYKYLVVLAVTAGVAVFTLHSSSKkhstkksgSVDEAANMTWGLLLL 231
                 55555543314677778889******************998777666532222221112223667777666 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0016
    CRT-like  79 avsgilvvigavstsGslqvllnqaiipitllasllllkerysliqylGAlviilgvvvv 138
                 av+ ++ + +  + s +l v ++ +   +t+++s++   +r   +q lG  ++ +g+ v 
  CCE30938.1 327 AVGQVFIFYTLSTFSSVLLVTVTVTRKMFTMILSVVAFGHRLTHMQWLGVGLVFGGIGVE 386
                 6777777778888888899999999999**************************999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3012.17
//
Query:       CCE30939.1  [L=382]
Description: related to poly(rC)-binding protein 3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-39  133.2  12.6    1.1e-15   57.1   0.1    3.4  3  KH_1      KH domain
    1.3e-09   37.7  11.2     0.0096   15.7   0.5    3.3  3  KH_2      KH domain
    5.1e-07   29.5   9.5      0.026   14.4   0.4    3.5  3  KH_4      KH domain
    7.8e-05   22.7   6.1       0.24   11.5   0.1    3.4  3  KH_5      NusA-like KH domain
     0.0078   16.2   0.1        9.5    6.3   0.1    3.1  3  MOEP19    KH-like RNA-binding domain


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   1.1   7.6e-12   2.7e-08       3      63 ..      58     117 ..      56     120 .. 0.90
   2 !   49.1   1.1     1e-16   3.6e-13       3      65 ..     144     206 ..     142     207 .. 0.93
   3 !   57.1   0.1   3.2e-19   1.1e-15       1      65 [.     301     365 ..     301     366 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 7.6e-12
                 EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT...T.-EEEEEESHHHHHHHHHH CS
        KH_1   3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpk.sedegsderevtisGspeavekAkel 63 
                 r +v s+ +g iIGkgG+n+ ++r+etg+k  v k  +    ++r++ti G+ +++ +A + 
  CCE30939.1  58 RAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKvVQGV--HDRVLTINGDCNSISRAYAI 117
                 5679999*************************99888886..************9*999876 PP

  == domain 2  score: 49.1 bits;  conditional E-value: 1e-16
                 EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT....T.-EEEEEESHHHHHHHHHHHH CS
        KH_1   3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg.sderevtisGspeavekAkelie 65 
                 ++l+ ++++g iIG++G +Ik+I++ +g++++    e+ + s+er+v+++G+pe++++A+ +i 
  CCE30939.1 144 KLLISHNQMGTIIGRQGLKIKHIQDVSGVRMVAQ-KEMLPqSTERIVEVQGTPEGIQRAIWEIC 206
                 689****************************977.888889*******************9985 PP

  == domain 3  score: 57.1 bits;  conditional E-value: 3.2e-19
                 EEEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT....T.-EEEEEESHHHHHHHHHHHH CS
        KH_1   1 tlrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg.sderevtisGspeavekAkelie 65 
                 t+ i++P+++vg+iIG+ Gs+I eIr+ +ga+I +    +++ ++er++ti G++++ e A+ l++
  CCE30939.1 301 TQNISIPADMVGCIIGRAGSKISEIRKTSGARISIA-KAPHDeTGERMFTIMGTAKSNESALFLLY 365
                 5779***********************77*****98.566667*************9999999886 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.5   2.7e-06    0.0096      26      55 ..      56      85 ..      44      94 .. 0.82
   2 !   14.3   0.6   7.2e-06     0.026      25      58 ..     141     174 ..     122     199 .. 0.86
   3 !   13.4   0.2   1.4e-05     0.049      26      59 ..     301     334 ..     292     339 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.7e-06
                EEEEEEEESCHHHHHTGGGHHHHHHHHHHH CS
        KH_2 26 rviiviresqpgivIGkgGsnikkigkelr 55
                 ++ ++ + + g++IGkgG+n+  ++ e +
  CCE30939.1 56 TIRAIVSSKEAGVIIGKGGKNVADLRDETG 85
                5778899999**************998876 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 7.2e-06
                 CEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHH CS
        KH_2  25 nrviiviresqpgivIGkgGsnikkigkelrkdi 58 
                 + v++ i  +q+g +IG++G +ik i+   + ++
  CCE30939.1 141 HPVKLLISHNQMGTIIGRQGLKIKHIQDVSGVRM 174
                 56889999******************98777766 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 1.4e-05
                 EEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHH CS
        KH_2  26 rviiviresqpgivIGkgGsnikkigkelrkdie 59 
                   +i i +   g +IG+ Gs+i +i+k+ + +i 
  CCE30939.1 301 TQNISIPADMVGCIIGRAGSKISEIRKTSGARIS 334
                 556667777789******************9995 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.4   2.5e-05     0.091      21      52 ..      47      78 ..      21      82 .. 0.85
   2 !   14.4   0.4   7.2e-06     0.026      25      57 ..     137     169 ..     129     180 .. 0.86
   3 !    6.7   0.1    0.0019       6.7      24      52 ..     295     323 ..     291     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
        KH_4 21 teeeeeeeveielnvegedlGrvIGkrGrtld 52
                +ee+ + + +i+  v++++ G++IGk G+++ 
  CCE30939.1 47 DEEYAQVQLTIRAIVSSKEAGVIIGKGGKNVA 78
                555666677888889**************976 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 7.2e-06
        KH_4  25 eeeeveielnvegedlGrvIGkrGrtldAlqyl 57 
                 ++ ++ ++l ++ +++G +IG++G  ++ +q +
  CCE30939.1 137 NNGTHPVKLLISHNQMGTIIGRQGLKIKHIQDV 169
                 5678999*****************999988866 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0019
        KH_4  24 eeeeeveielnvegedlGrvIGkrGrtld 52 
                 ++ee ++ ++++  + +G +IG+ G  ++
  CCE30939.1 295 NGEEIQTQNISIPADMVGCIIGRAGSKIS 323
                 55667778999999***********9876 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.7    0.0071        25       8      36 ..      60      83 ..      55      98 .. 0.85
   2 !    7.3   0.0    0.0014         5       8      34 ..     146     167 ..     141     170 .. 0.80
   3 !   11.5   0.1   6.8e-05      0.24      17      46 ..     309     337 ..     300     344 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0071
        KH_5  8 aVkshnpnvdpvGaivgkkGsrikavsse 36
                +V s++     +G i+gk+G+++  + +e
  CCE30939.1 60 IVSSKE-----AGVIIGKGGKNVADLRDE 83
                566666.....9***********999887 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0014
        KH_5   8 aVkshnpnvdpvGaivgkkGsrikavs 34 
                  +  ++     +G+i+g++G +ik + 
  CCE30939.1 146 LISHNQ-----MGTIIGRQGLKIKHIQ 167
                 555555.....9************997 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 6.8e-05
        KH_5  17 dpvGaivgkkGsrikavsseLkgekidvve 46 
                 d vG i+g+ Gs+i+++ +   g +i + +
  CCE30939.1 309 DMVGCIIGRAGSKISEIRKTS-GARISIAK 337
                 88***************9886.99998876 PP

>> MOEP19  KH-like RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.092   3.3e+02      18      61 ..      26      70 ..      23      74 .. 0.87
   2 !    6.3   0.1    0.0026       9.5      13      44 ..     141     172 ..     135     210 .. 0.73
   3 ?    4.4   0.0      0.01        37      18      51 ..     305     338 ..     301     368 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.092
      MOEP19 18 yleawlleaiFGpdgeripei.Eqvsqtllevkaldseglaeili 61
                ++e+  +e   Gpdge  p+  E   q+ l+++a+ s+++a ++i
  CCE30939.1 26 HMEQLKIEERLGPDGEPAPKTdEEYAQVQLTIRAIVSSKEAGVII 70
                78888899999*****9999857789999********99999987 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0026
      MOEP19  13 dPlvfyleawlleaiFGpdgeripeiEqvsqt 44 
                 +P  + +  +++  i G++g +i++i+ vs +
  CCE30939.1 141 HPVKLLISHNQMGTIIGRQGLKIKHIQDVSGV 172
                 78889999999****************99965 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.01
      MOEP19  18 yleawlleaiFGpdgeripeiEqvsqtllevkal 51 
                  + a+++  i G+ g++i+ei ++s + +++ + 
  CCE30939.1 305 SIPADMVGCIIGRAGSKISEIRKTSGARISIAKA 338
                 567889999**************99988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2704.71
//
Query:       CCE30940.1  [L=909]
Description: related to GTP-binding protein FZO1, required for biogenesis of mitochondria [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-18   65.2   0.0    1.6e-17   64.1   0.0    1.5  1  Dynamin_N  Dynamin family
      2e-10   40.8   0.1    2.5e-09   37.2   0.1    2.6  1  MMR_HSR1   50S ribosome-binding GTPase
    1.6e-06   27.8   1.3    2.8e-05   23.7   1.3    2.3  1  GTP_EFTU   Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.046   13.9   0.0        1.2    9.4   0.0    2.6  2  Roc        Ras of Complex, Roc, domain of DAPkinase
      0.084   13.4   0.0       0.55   10.8   0.0    2.4  2  AAA_18     AAA domain
       0.11   12.5   0.0       0.26   11.3   0.0    1.5  1  TsaE       Threonylcarbamoyl adenosine biosynthesis protein T
       0.12   12.1   0.0       0.34   10.7   0.0    1.7  1  AAA_29     P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   6.1e-21   1.6e-17       1     165 [.     267     437 ..     267     439 .. 0.73

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 6.1e-21
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C....CS...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEE CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas....eravkeelkekekkledfsevreeieketekiagankgiskkvillki 95 
                 +++ G+ ++GKS++ naLl++++lp +++p+T+ ++e+   +e+         +++ e+  + +  +d+ +++e  +  t++ + ++ ++  + i + +
  CCE30940.1 267 VLITGDLNAGKSTFCNALLRRKVLPEDQQPCTAIFCEVLDARENAGIeevhAVHRNTEYSRNDETTYDVYALAELESIVTDNETYTQCKVYVRDIRTVD 365
                 6799*********************************98877666553443333334444446666666666666555555555555555555555555 PP

                 EETT...S-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEE CS
   Dynamin_N  96 lsll...vkgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvl 165
                  sll   v ++ l+D PGl+s  ++    ++   ++ d++++v+sa + +++s ++f+  ++ +k   ++vv+
  CCE30940.1 366 ESLLnngVVDIALIDAPGLNSDTTKT-TAIFARQEEIDVVVFVVSAANHFTQSAQEFIFAAAAEKAYLFVVVN 437
                 555500156678*********77777.77777779**********************9988887776666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   9.9e-13   2.5e-09       1     113 [.     266     437 ..     266     438 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 9.9e-13
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSS.SEEEEEEEETTEE................................................... CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTr.dinegrvklkgke................................................... 47 
                 +v+i G  N+GKSt+ nal+++k+  +d++ +T    +    +  + +                                                   
  CCE30940.1 266 KVLITGDLNAGKSTFCNALLRRKVLPEDQQPCTAiFCEVLDAR--E-Nagieevhavhrnteysrndettydvyalaelesivtdnetytqckvyvrdi 361
                 589******************9887766665555044555554..2.12455667777778888889999999999999999999999*********** PP

                 ..............EEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEE CS
    MMR_HSR1  48 ..............ielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeeleelleeakkplilvln 113
                               i l+D pG ++  s+  + +  f++ ee d++++vv+a+ +++++  +e+      +k  l++v+n
  CCE30940.1 362 rtvdesllnngvvdIALIDAPG-LN--SDTTKTTAIFARQEEIDVVVFVVSAA-NHFTQSAQEFIFAAAAEKAYLFVVVN 437
                 **********************.65..344467777888888*********88.55888877777666556666777776 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   1.3   1.1e-08   2.8e-05       5     141 ..     266     450 ..     262     479 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.1e-08
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST...............................HCH.SHHHHHHTSCSSCEEEEEE....... CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv...............................lDt.lkeErergiTiksaaisle....... 64 
                 ++ i g++++GK+T++ +Ll ++   ++++  +  + +                                D  + +E e  +T + + ++++       
  CCE30940.1 266 KVLITGDLNAGKSTFCNALLRRKVLPEDQQPCT--AIFcevldarenagieevhavhrnteysrndettYDVyALAELESIVTDNETYTQCKvyvrdir 362
                 68899**************97665544433222..2223344444555666666666666666655555332122344444444444444449999999 PP

                 ......TTCSSEEEEEEEESSSGGGHHHHHHH...HHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST..HHHHHH CS
    GTP_EFTU  65 ......ketkkylinliDtPGHvdFskevirg...lrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrl..kaelke 141
                        +     i+liD+PG  + + ++++     + +D++v+vv+a++  ++  +e +  a +e+  ++v++N  D++  ka++++
  CCE30940.1 363 tvdeslLNNGVVDIALIDAPGLNSDTTKTTAIfarQEEIDVVVFVVSAANHFTQSAQEFIFAAAAEKAYLFVVVNGFDNIrdKARCQK 450
                 9998654888999********988777777665345679****************************************965454444 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00046       1.2       1      36 [.     266     301 ..     266     367 .. 0.83
   2 ?    1.7   0.1      0.11   2.8e+02      55     119 ..     373     440 ..     341     441 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00046
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEE CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdf 36 
                 Kv++ Gd ++GK+++++ ++++k+ ++ ++ + + f
  CCE30940.1 266 KVLITGDLNAGKSTFCNALLRRKVLPEDQQPCTAIF 301
                 89********************99888776655544 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.11
                 CEEEEEEEE-S.GGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHHHH..HHHCSSS-EEEEEE-TT CS
         Roc  55 kvklniWDtaG.qerfrslhplylreaalailvydsrssenlkeWlkel..kkvagkspvilvgnkiD 119
                  v +++ D  G + ++ +++ ++ r++++ ++v+  +  +++ +  +e+   + a+k+ +++v+n  D
  CCE30940.1 373 VVDIALIDAPGlNSDTTKTTAIFARQEEIDVVVFVVSAANHFTQSAQEFifAAAAEKAYLFVVVNGFD 440
                 466777777773456778999******99999987544443333333321144556667778888766 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021      0.55       1      21 [.     267     287 ..     267     364 .. 0.73
   2 ?   -1.8   0.0       1.6   4.2e+03      48      82 ..     423     456 ..     398     459 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
      AAA_18   1 IlltGtpGvGKttlakeLskr 21 
                 +l+tG   +GK+t++++L +r
  CCE30940.1 267 VLITGDLNAGKSTFCNALLRR 287
                 79****************776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.6
      AAA_18  48 eskrldedkldklldaleenssaleegknlvidgh 82 
                     +++ +l +++++++++++  + ++ l++d++
  CCE30940.1 423 FAAAAEKAYLFVVVNGFDNIRD-KARCQKLILDQL 456
                 5566777888899999999987.899999999987 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0001      0.26      14      42 ..     260     287 ..     244     301 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
                 HHHCHTEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  14 lakalgdvilLeGdLGaGKTtlvrglaka 42 
                 + + +++ +l++GdL aGK+t++ +l++ 
  CCE30940.1 260 IED-TSSKVLITGDLNAGKSTFCNALLRR 287
                 332.24569****************9986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00013      0.34      23      42 ..     265     284 ..     257     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
      AAA_29  23 gatlltGpsGsGKSTllDAi 42 
                 + +l+tG+  +GKST+  A+
  CCE30940.1 265 SKVLITGDLNAGKSTFCNAL 284
                 369************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.42
# Mc/sec: 6456.57
//
Query:       CCE30941.1  [L=623]
Description: uncharacterized protein CPUR_04792 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   14.2   0.8      0.032   14.2   0.8    2.5  3  DUF3787   Domain of unknown function (DUF3787)
        1.1    9.2   9.7       0.16   12.0   1.2    2.6  2  DUF5102   Domain of unknown function (DUF5102)


Domain annotation for each model (and alignments):
>> DUF3787  Domain of unknown function (DUF3787)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.58   5.2e+03      19      30 ..     101     112 ..      95     118 .. 0.81
   2 ?   14.2   0.8   3.5e-06     0.032       9      45 ..     310     347 ..     306     348 .. 0.92
   3 ?   -3.6   0.0       1.2   1.1e+04       9      22 ..     357     370 ..     356     372 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.58
     DUF3787  19 AWanieklkpes 30 
                 AW ++e  +p +
  CCE30941.1 101 AWGDFEAAEPST 112
                 9****9999876 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.5e-06
     DUF3787   9 skpiEnhdTAAW.anieklkpeskVsiPseeeVenAKe 45 
                  +piE ++ AAW     + kp+   + Ps+ +V nAK+
  CCE30941.1 310 RAPIEDNEWAAWgGSSTEAKPQVITQTPSQPGVMNAKK 347
                 68**********8888999999999************6 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1.2
     DUF3787   9 skpiEnhdTAAWan 22 
                 ++p++ ++  AW +
  CCE30941.1 357 QVPVDDDEWTAWDD 370
                 57999999999976 PP

>> DUF5102  Domain of unknown function (DUF5102)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.6     0.019   1.7e+02      14      57 ..      94     135 ..      89     186 .. 0.53
   2 ?   12.0   1.2   1.8e-05      0.16       4      69 ..     197     284 ..     196     291 .. 0.44

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.019
     DUF5102  14 aedddd..FgDFddg.fqeee....aeeseeaeeeepaepsasslsfplld 57 
                 +++ddd  +gDF++   + ++    +     a+     +++a+++++p  +
  CCE30941.1  94 NDEDDDeaWGDFEAAePSTPSvafpM-----ASF----QAHAPVSTTPGSN 135
                 22333346*****6324444433221.....111....2222222232223 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.8e-05
     DUF5102   4 DfddFeegaea...eddddFgDFd....dgfqeee..................aees.eeaeeeepaepsasslsf.......plldfesldlesdlla 69 
                 D ddFe ++     ed ddFgDF+    +    +                     ++   + ++e  +       +       + l++e l +++++++
  CCE30941.1 197 DADDFELQDGGegdEDLDDFGDFEvvkpQ---SNGtagppgassassafdllsL-DDpPVQLRQESVS-------MsnsrafeSPLNWEGLPTDTKPQS 284
                 55777654433335777899999954330...2223444455444443333221.1111111111112.......122333445566776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4591.17
//
Query:       CCE30942.1  [L=784]
Description: related to TBC1 domain family member 5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-26   92.2   3.9    1.4e-25   90.2   3.9    1.9  1  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   3.9   7.8e-30   1.4e-25      21     215 .]      87     328 ..      40     328 .. 0.77

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 7.8e-30
  RabGAP-TBC  21 lkksekkqeksekeksklekseeske.lsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevg.YcqGmndivaplllvsldeee........ 109
                 + ++   +    + +s +++ +++++    I++Dv r  + +++  ++ +q ++  iL++y++ npe g Y qGm+ ++ap+  ++l+e +        
  CCE30942.1  87 ALNELAIDPLADDPESPWNTVRQDEItRAEIQQDVLRLPD-EANYHEQGVQGMILDILFIYCKSNPERGgYRQGMHELLAPIV-YTLQEDSidrdavdt 183
                 444555555555666666666667776999*******955.777888889****************7655*************.777777777888888 PP

  RabGAP-TBC 110 ....................aFwcfvsLlekyklrdlytssl................pg...lkrklkvleellkkkdpklykhlkeegldlelfaik 169
                                     a+ +f++L+  ++ +++y+ +                 ++   + r  ++ e +l+k+dp+l+ hl + ++ +++f+i+
  CCE30942.1 184 ssevdqtmldvldsafiehdAYTLFSRLM--EHAQSFYEVTEetlhprhatsptshrgQRsaiVDRSKYIHEVCLRKVDPELAAHLSNVEILPQIFIIR 280
                 88888888999999999999*********..66666666555344666666666654411456777777****************************** PP

  RabGAP-TBC 170 wfltlflrefpletvlrlwD.lllegekfvllr.valailklleeell 215
                 w+  lf+refp++++l lwD +++ +++  l+  +++a+l + +++ll
  CCE30942.1 281 WVRLLFSREFPFDQFLVLWDaIFALNPSLELVDlICVAMLIRIRQQLL 328
                 ********************999888899999999***9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 5396.90
//
Query:       CCE30943.1  [L=803]
Description: uncharacterized protein CPUR_04794 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.9    6.9   8.1         14    6.1   8.1    1.4  1  C1_2       C1 domain


Domain annotation for each model (and alignments):
>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   8.1    0.0008        14       7      46 ..     731     767 ..     717     768 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0008
        C1_2   7 LtlskgedssesfnCsaCgrkidgffYsCseCdfslhvrC 46 
                 L+   +++++ s +C++Cgr   +++  C+ C   +++ C
  CCE30943.1 731 LR---RSNRHYSLTCQTCGRGDAEDRWGCTFCYLRVCEAC 767
                 33...559999**********88899***99********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.61
# Mc/sec: 3971.18
//
Query:       CCE30944.1  [L=513]
Description: uncharacterized protein CPUR_04795 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        4.1    5.4   5.9        6.1    4.8   5.9    1.2  1  FSA_C     Fragile site-associated protein C-terminus


Domain annotation for each model (and alignments):
>> FSA_C  Fragile site-associated protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   5.9   0.00034       6.1     541     605 ..      27      92 ..       9     110 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.00034
       FSA_C 541 tpklmsaakssleslqgsq.dsiaiattasavelndatsstiasaatasslsstkstvtivvstnd 605
                 +p+ +s ++  l++    +   ++i  +a+++++ ++t+s+++++ t+ ++ s+ ++ + ++s ++
  CCE30944.1  27 APRSVSPSRLPLKPASRPRpRPLSIHGSATTATASSTTASATTTTNTTRTTRSASTQLARTTSLSQ 92 
                 555555555555555333313347888888889998998888888888888888888888887544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       996  (0.0555525); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 3498.40
//
Query:       CCE30945.1  [L=115]
Description: uncharacterized protein CPUR_04796 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0048   16.7   0.2      0.043   13.6   0.0    2.1  2  BTRD1     Bacterial tandem repeat domain 1


Domain annotation for each model (and alignments):
>> BTRD1  Bacterial tandem repeat domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.4e-06     0.043       3      24 ..      41      62 ..      39      63 .. 0.91
   2 ?    0.9   0.0     0.024   4.2e+02      25      38 ..      87     100 ..      86     105 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.4e-06
       BTRD1  3 awearhGltaaqyqakfdklka 24
                 w+++  ltaa+y ++fd++++
  CCE30945.1 41 HWVCKVHLTAADYGSRFDDQTG 62
                6*****************9986 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.024
       BTRD1  25 kGYrpvhvsgYgvg 38 
                 +GY   + +gY+v+
  CCE30945.1  87 AGYFILDKQGYNVN 100
                 69999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 868.86
//
Query:       CCE30946.1  [L=115]
Description: uncharacterized protein CPUR_04797 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 874.48
//
Query:       CCE30947.1  [L=124]
Description: uncharacterized protein CPUR_04798 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 974.06
//
Query:       CCE30948.1  [L=259]
Description: probable multicopy suppressor of los1-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-69  233.8   0.0    2.4e-69  233.6   0.0    1.0  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.6   0.0   1.4e-73   2.4e-69       2     220 ..      12     235 ..      11     241 .. 0.94

  Alignments for each domain:
  == domain 1  score: 233.6 bits;  conditional E-value: 1.4e-73
                      SHHHHHHHHHHHHHHHHHHHHHHHS-EEEEE--SHCHHHHHHHHHCSG.GGG.GS-GGGEEEEESEEESS-TTSTT-HHHHHHHHTGGGS-.-- CS
  Glucosamine_iso   2 dkeelaealaarivealeealaergraslalsGGstpkalyealaeeeeaaa.aldwskvhvflgDERfVpaddpdsNaklareallskvk.ip 93 
                      +++ la al a+iv+ +++  ++++++++a+sGGs+pk+l +al + ++ ++ +ld+sk+++f++DER Vp d++dsN++l++ ++l+k++  +
       CCE30948.1  12 NTDVLAPALRAYIVQSQNAGFERHNVFKIAVSGGSLPKTLAQALLAPSQGPQdKLDFSKWEIFYADERAVPLDHADSNHALLKAEFLDKLPaGE 105
                      578899***************************************98887779************************************98567 PP

                      GGGEE-S-TTSSTHHHHHHHHHHHHHHHHCC....SSSSSESEEEE---TTS-BTTB-TTCHHHHCSSSSEEEESSBSTSSS-EEEE-HHHHTT CS
  Glucosamine_iso  94 eanvhpikesaaeapeaaaaayeeelkella....kelpvfDlvlLGmGpDGHtaSLFPgspeleetdrlvvavedspkpppeRitlTlpvlns 183
                      + +vhpi+ ++ ++ ++ a++ye++l + +a     +lp fDl+lLG+GpDGHt+SLFPg++ l++ d++v++++dspkppp+RitlTlpv+ +
       CCE30948.1 106 QPTVHPIDPAHLDDIQELADQYEKTLVSSFAsrdsVRLPIFDLLLLGCGPDGHTCSLFPGHELLRNADAWVAPISDSPKPPPRRITLTLPVVTH 199
                      77******999999**************9999***9********************************************************** PP

                      CSEEEEEEESHHHHHHHHHHHTT..TTTSGGGGH-.-S CS
  Glucosamine_iso 184 arevlflvaGeeKaealeevlsgedpeelPaalve.gq 220
                      a +++f+++G++K+++++++++  ++e+lP+alv+   
       CCE30948.1 200 AVRIAFVATGSGKKDIMKQIFD--SSEDLPCALVNdAA 235
                      *********************8..567*******7433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2102.67
//
Query:       CCE30949.1  [L=429]
Description: uncharacterized protein CPUR_04800 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-06   25.6   8.8      0.063   12.9   0.3    3.7  4  zf-C2H2_12      Zinc-finger C2H2-type
     0.0027   17.7  10.3        0.7   10.0   0.6    3.8  3  zf-ACC          Acetyl-coA carboxylase zinc finger domain
  ------ inclusion threshold ------
       0.03   14.2   0.9        2.3    8.2   0.0    3.0  3  PyrI_C          Aspartate carbamoyltransferase regulatory cha
      0.033   14.1   0.1      0.033   14.1   0.1    2.3  3  DUF4428         Domain of unknown function (DUF4428)
      0.059   13.2   4.9          2    8.3   0.2    3.4  3  zinc_ribbon_12  Probable zinc-ribbon domain
      0.088   12.5   0.1         65    3.3   0.0    3.2  3  DNA_pol3_theta  DNA polymerase III, theta subunit
        0.1   13.1   0.3         40    4.8   0.0    3.1  3  SIX1_SD         Transcriptional regulator, SIX1, N-terminal S
        0.1   12.0   5.1         28    4.2   0.0    3.8  3  zf_Rg           Reverse gyrase zinc finger
       0.28   10.9   1.6         15    5.3   0.0    2.8  3  PBC             PBC domain
        3.7    8.0   9.3        3.1    8.2   0.7    3.2  3  HIPIP           High potential iron-sulfur protein


Domain annotation for each model (and alignments):
>> zf-C2H2_12  Zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.3    0.0039         7      16      45 ..      53      82 ..      46      87 .. 0.91
   2 ?   -2.3   0.0       1.9   3.4e+03      41      55 ..     104     118 ..     101     121 .. 0.80
   3 !   12.9   0.3   3.5e-05     0.063      13      47 ..     144     178 ..     140     190 .. 0.94
   4 !    9.8   0.0   0.00031      0.56      18      47 ..     248     277 ..     243     294 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0039
  zf-C2H2_12 16 ydpqrrglvCmvCgeslaslklstikrHIr 45
                +d  + gl C  C  +  s  l++i +H  
  CCE30949.1 53 FDKVQAGLKCKTCDFMIKSKDLERILKHLC 82
                788899**********************86 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.9
  zf-C2H2_12  41 krHIrqvHPeslsls 55 
                 +rH+   H ++l  +
  CCE30949.1 104 QRHVFGSHSATLVAT 118
                 79******9998765 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 3.5e-05
  zf-C2H2_12  13 LmdydpqrrglvCmvCgeslaslklstikrHIrqv 47 
                  m +d  + gl C  C+++  s  l++i +H  q+
  CCE30949.1 144 FMKFDKVQAGLKCKSCEKVIRSNDLERILKHLCQC 178
                 599****************************9886 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00031
  zf-C2H2_12  18 pqrrglvCmvCgeslaslklstikrHIrqv 47 
                   ++gl+C  C ++  s  l++i +H  ++
  CCE30949.1 248 KVQDGLLCKACAKVIRSNDLERILKHLCKC 277
                 5689**********************8665 PP

>> zf-ACC  Acetyl-coA carboxylase zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.4   0.00082       1.5       3      18 ..      61      76 ..      60      79 .. 0.93
   2 !   10.0   0.6   0.00039       0.7       3      18 ..     155     170 ..     154     173 .. 0.93
   3 ?    3.2   0.2     0.052        93       4      18 ..     255     269 ..     255     272 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00082
      zf-ACC  3 KCpsCgemlykkeLer 18
                KC  C  m+  k+Ler
  CCE30949.1 61 KCKTCDFMIKSKDLER 76
                9**************8 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00039
      zf-ACC   3 KCpsCgemlykkeLer 18 
                 KC sC+ ++  ++Ler
  CCE30949.1 155 KCKSCEKVIRSNDLER 170
                 9**************8 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.052
      zf-ACC   4 CpsCgemlykkeLer 18 
                 C +C  ++  ++Ler
  CCE30949.1 255 CKACAKVIRSNDLER 269
                 **************8 PP

>> PyrI_C  Aspartate carbamoyltransferase regulatory chain, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.06   1.1e+02      24      46 ..      50      72 ..      45      74 .. 0.82
   2 ?    8.2   0.0    0.0013       2.3      23      46 ..     143     166 ..     132     168 .. 0.77
   3 ?   -0.5   0.0      0.68   1.2e+03      28      46 ..     247     265 ..     239     267 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.06
                EEEEETTTTEEEETTT--EEEHH CS
      PyrI_C 24 FkvedkekvklkCkYCekeisee 46
                Fk  dk +  lkCk C+  i+ +
  CCE30949.1 50 FKKFDKVQAGLKCKTCDFMIKSK 72
                6667799999*******998876 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0013
                 EEEEEETTTTEEEETTT--EEEHH CS
      PyrI_C  23 kFkvedkekvklkCkYCekeisee 46 
                  F   dk +  lkCk Cek+i+ +
  CCE30949.1 143 AFMKFDKVQAGLKCKSCEKVIRSN 166
                 45557899999*********9876 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.68
                 ETTTTEEEETTT--EEEHH CS
      PyrI_C  28 dkekvklkCkYCekeisee 46 
                 +k +  l Ck C k+i+ +
  CCE30949.1 247 EKVQDGLLCKACAKVIRSN 265
                 46777899******99876 PP

>> DUF4428  Domain of unknown function (DUF4428)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       4.8   8.5e+03      16      26 ..      55      65 ..      48      67 .. 0.68
   2 ?   -1.5   0.1       1.4   2.5e+03      16      28 ..     149     161 ..     140     174 .. 0.71
   3 ?   14.1   0.1   1.8e-05     0.033       8      30 ..     239     262 ..     238     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.8
     DUF4428 16 kleDgyvCkdC 26
                k++ g  Ck+C
  CCE30949.1 55 KVQAGLKCKTC 65
                55556669999 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.4
     DUF4428  16 kleDgyvCkdClk 28 
                 k++ g  Ck+C k
  CCE30949.1 149 KVQAGLKCKSCEK 161
                 5566666999966 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 1.8e-05
     DUF4428   8 Kigllkr.lkleDgyvCkdClkKl 30 
                 K++ +++  k++Dg +Ck+C+k +
  CCE30949.1 239 KHPAFNKfEKVQDGLLCKACAKVI 262
                 6777877779**********9965 PP

>> zinc_ribbon_12  Probable zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.12   2.2e+02      23      41 ..      51      69 ..      48      72 .. 0.79
   2 ?    8.3   0.2    0.0011         2      22      42 ..     144     164 ..     140     166 .. 0.88
   3 ?    3.2   0.1     0.044        78      24      42 ..     245     263 ..     241     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.12
  zinc_ribbon_12 23 lllkkkqqklrCGaCsevl 41
                      + k q+ l+C +C  ++
      CCE30949.1 51 KKFDKVQAGLKCKTCDFMI 69
                    567789999******8766 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0011
  zinc_ribbon_12  22 flllkkkqqklrCGaCsevls 42 
                     f+ + k q+ l+C +C++v++
      CCE30949.1 144 FMKFDKVQAGLKCKSCEKVIR 164
                     67788999***********96 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.044
  zinc_ribbon_12  24 llkkkqqklrCGaCsevls 42 
                      ++k q  l C aC +v++
      CCE30949.1 245 KFEKVQDGLLCKACAKVIR 263
                     5678889999******996 PP

>> DNA_pol3_theta  DNA polymerase III, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.11     2e+02      22      35 ..      95     108 ..      90     124 .. 0.81
   2 ?    3.3   0.0     0.036        65      18      32 ..     185     199 ..     183     206 .. 0.88
   3 ?    3.0   0.0     0.044        78      18      32 ..     284     298 ..     283     308 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.11
  DNA_pol3_theta  22 sgvafkERynmPVv 35 
                     + +a++ERy++ V 
      CCE30949.1  95 AMLAYQERYQRHVF 108
                     668******98775 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.036
  DNA_pol3_theta  18 dlaasgvafkERynm 32 
                     d+a + +a++ERy++
      CCE30949.1 185 DKADAELAYQERYQK 199
                     899999*******85 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.044
  DNA_pol3_theta  18 dlaasgvafkERynm 32 
                     d+aa+  a+ ERy++
      CCE30949.1 284 DKAAALAAYEERYQR 298
                     899**********74 PP

>> SIX1_SD  Transcriptional regulator, SIX1, N-terminal SD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.022        40       9      41 ..      64      96 ..      58     116 .. 0.80
   2 ?    2.6   0.0      0.11   1.9e+02      10      34 ..     159     183 ..     153     205 .. 0.79
   3 ?    1.8   0.0      0.19   3.4e+02       8      34 ..     256     282 ..     250     299 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.022
     SIX1_SD  9 icevLlqagdierLarfleslpkseelkksesv 41
                 c+ + +++d+er+ + l+++pk++  +k +++
  CCE30949.1 64 TCDFMIKSKDLERILKHLCKCPKAQPRDKGDAM 96
                7*********************96554444444 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.11
     SIX1_SD  10 cevLlqagdierLarfleslpksee 34 
                 ce + +++d+er+ + l+++p ++ 
  CCE30949.1 159 CEKVIRSNDLERILKHLCQCPGAQP 183
                 9*****************9998544 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.19
     SIX1_SD   8 cicevLlqagdierLarfleslpksee 34 
                 + c  + +++d+er+ + l+++p+++ 
  CCE30949.1 256 KACAKVIRSNDLERILKHLCKCPRTRP 282
                 5699999*************9998654 PP

>> zf_Rg  Reverse gyrase zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.7     0.019        34      20      40 ..      54      76 ..      52      84 .. 0.75
   2 ?    4.2   0.0     0.016        28      20      31 ..     148     159 ..     144     161 .. 0.89
   3 ?    3.2   0.0     0.032        58      20      31 ..     247     258 ..     245     265 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.019
       zf_Rg 20 eRlekGLpCkrC..lPkegdvck 40
                +++++GL Ck C  + k++d+ +
  CCE30949.1 54 DKVQAGLKCKTCdfMIKSKDLER 76
                6789********66666666655 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.016
       zf_Rg  20 eRlekGLpCkrC 31 
                 +++++GL Ck+C
  CCE30949.1 148 DKVQAGLKCKSC 159
                 7889******** PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.032
       zf_Rg  20 eRlekGLpCkrC 31 
                 e+++ GL+Ck C
  CCE30949.1 247 EKVQDGLLCKAC 258
                 67899******* PP

>> PBC  PBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.034        61     163     181 ..      51      69 ..      41      74 .. 0.88
   2 ?    5.3   0.0    0.0086        15     164     181 ..     146     163 ..     138     167 .. 0.92
   3 ?   -1.2   0.0       0.8   1.4e+03     163     181 ..     244     262 ..     233     265 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.034
         PBC 163 kkfsaiqiqlkqstCeavm 181
                 kkf ++q  lk +tC+ ++
  CCE30949.1  51 KKFDKVQAGLKCKTCDFMI 69 
                 8**************9766 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0086
         PBC 164 kfsaiqiqlkqstCeavm 181
                 kf ++q  lk ++Ce+v+
  CCE30949.1 146 KFDKVQAGLKCKSCEKVI 163
                 9****************8 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.8
         PBC 163 kkfsaiqiqlkqstCeavm 181
                 +kf+++q  l  ++C +v+
  CCE30949.1 244 NKFEKVQDGLLCKACAKVI 262
                 8***************998 PP

>> HIPIP  High potential iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.7    0.0017       3.1      19      42 ..      50      73 ..      33      88 .. 0.81
   2 ?    2.7   0.3     0.093   1.7e+02      19      36 ..     144     161 ..     139     179 .. 0.83
   3 ?    0.7   0.1      0.37   6.7e+02      20      36 ..     244     260 ..     233     276 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0017
                HHHH--SSGG-SGGGBTTEESTST CS
       HIPIP 19 kakharyeegqhCanCalyqkkee 42
                  k++++++g +C++C ++ k ++
  CCE30949.1 50 FKKFDKVQAGLKCKTCDFMIKSKD 73
                34789999***********98876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.093
                 HHHH--SSGG-SGGGBTT CS
       HIPIP  19 kakharyeegqhCanCal 36 
                  +k++++++g +C+ C  
  CCE30949.1 144 FMKFDKVQAGLKCKSCEK 161
                 57999***********75 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.37
                 HHH--SSGG-SGGGBTT CS
       HIPIP  20 akharyeegqhCanCal 36 
                 +k++++++g  C+ Ca 
  CCE30949.1 244 NKFEKVQDGLLCKACAK 260
                 5788999********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3346.24
//
Query:       CCE30950.1  [L=554]
Description: uncharacterized protein CPUR_04801 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-08   35.6   0.0    7.8e-08   32.9   0.0    2.2  1  SET       SET domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   4.4e-12   7.8e-08       2     168 ..     254     516 ..     253     517 .. 0.52

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 4.4e-12
                 CEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH..........................................................HTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........................................................xxxxxx RF
         SET   2 rGvfAtedIpkgeficeypeeiiltkdeadksele..........................................................aylfsl 42 
                  G+fAtedI++ge +  + e ++lt ++  k  l                                                                 
  CCE30950.1 254 LGIFATEDIAPGEAV--LREFSLLTANNRLKDPLCdacsselpslgsetpainceecqdtvfcsqfchdiaqeryhpsvcekdvdpiakdsdaS----- 345
                 69*************..66666666666666666666666666666666666666677666667666555555444433333333222222220..... PP

                 EXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSX.........................XXHCCCCC.HCCCHEEEE... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxx.xxxxxxxxx... RF
         SET  43 peapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdlna.........................skpeagaf.saiagysid... 112
                           ++++++ +  l + la + +q+++                                            ++p ++++     +y i+   
  CCE30950.1 346 ----------EADEALYLLLLSRVLALAAHQEIHP-----------------LdvrevrfiwgdfvptaandidvspnAEPPPEWTlPFSFKYNIEtpl 417
                 ..........2222222222222222222222222.................02222222333333333444455555333333333222222222333 PP

                 ...........TEEEEEECCC............................GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSX.........BXTTEE CS
                 ...........xxxxxxxxxx............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxx RF
         SET 113 ...........aralksgnga............................gplarflNHsCdpNcnltvqnvlrgprvavfAtrd.........IkkGeE 163
                            +  ++++ ++                             p++ + NH+CdpN+  t++    g+r+++ A+++         IkkGeE
  CCE30950.1 418 hilekmdidiyTCRWQYDLWVlntlyakfrgtasarkslrdgrpdvaavHPYWCLANHDCDPNV--TWDW---GGRMVLWARKErvvggreggIKKGEE 511
                 33333334455444444444466666666667777777778888999999**************..8887...56666666554444444444****** PP

                 EEEXT CS
                 xxxxx RF
         SET 164 ltidY 168
                 +++ Y
  CCE30950.1 512 ILNHY 516
                 ***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 4031.34
//
Query:       CCE30951.1  [L=699]
Description: related to calponin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-15   54.9   0.0    1.3e-14   54.2   0.0    1.3  1  CH         Calponin homology (CH) domain
  ------ inclusion threshold ------
      0.023   14.6   0.0      0.045   13.6   0.0    1.4  1  CAMSAP_CH  CAMSAP CH domain


Domain annotation for each model (and alignments):
>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   1.5e-18   1.3e-14       4     107 ..      24     127 ..      21     129 .. 0.83

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 1.5e-18
                 HHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTT.TSSGGGSTTTHHHHHHHHHHHHHHHHHH.TTCHTTSS.-HHHHHTTSHH.HHHH CS
          CH   4 kkellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapg.lvdkkklnksefkkleNinlaldvaekk.lgvpkvli.eaedlvegknk.svlt 98 
                  +e+++W+++ l+++ ++   +d+ e l+DGv+LckL+n  ap   v++k+  + +f ++eNi+ +l +++ + +++++ ++  ++dl+e k+  +vl+
  CCE30951.1  24 ANEARAWVEEALGQKLSS---SDLLEGLKDGVALCKLINLAAPPpGVKFKQS-AMPFVQMENISHFLRACQSSpFNLHPHDTfLTVDLYEQKDPaQVLQ 118
                 67899*******886443...7******************966504455544.44*************999645899999999*******77777**** PP

                 HHHHHHHHH CS
          CH  99 llaqLfraf 107
                 +l++++r++
  CCE30951.1 119 CLSAFSRVA 127
                 *****9986 PP

>> CAMSAP_CH  CAMSAP CH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.1e-06     0.045      14      80 ..      42     100 ..      36     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.1e-06
   CAMSAP_CH  14 edllrdlsdGvaLaalihfYcPqliklediclkesmsladslyNiqllqefcerkLgnsvfhltleD 80 
                 +dll+ l+dGvaL++li+   P       +++k+s+  +  ++Ni+ +  +c+++    +f+l++ D
  CCE30951.1  42 SDLLEGLKDGVALCKLINLAAPPP----GVKFKQSAMPFVQMENISHFLRACQSS----PFNLHPHD 100
                 79****************999874....478899999999********9999987....45555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2199  (0.12265); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.25u 0.30s 00:00:01.55 Elapsed: 00:00:00.49
# Mc/sec: 4247.59
//
Query:       CCE30952.1  [L=194]
Description: uncharacterized protein CPUR_04803 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-11   44.0   0.5      3e-11   44.0   0.5    1.9  2  NDUFA12   NADH ubiquinone oxidoreductase subunit NDUFA12
  ------ inclusion threshold ------
      0.034   13.8   0.2      0.055   13.1   0.2    1.3  1  GH101_N   Endo-alpha-N-acetylgalactosaminidase N-terminal


Domain annotation for each model (and alignments):
>> NDUFA12  NADH ubiquinone oxidoreductase subunit NDUFA12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.5   3.4e-15     3e-11       3      60 ..      27      87 ..      26     113 .. 0.79
   2 ?   -1.5   0.3      0.53   4.7e+03      35      42 ..     175     182 ..     151     190 .. 0.51

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 3.4e-15
     NDUFA12  3 lvGeDefGNkYyenke.ele.grrrwveyaekak.dasqvppeWhgWlhhitdkppteeka 60
                ++G+D +GN+Y+e k  +   + rr+v+y +++   + +v p Wh+Wl++ +++pp+ +++
  CCE30952.1 27 FIGYDLQGNTYWEFKLtSADtRMRRIVNYPSRTYnSQVKVSPLWHQWLRYARNTPPSLDEQ 87
                69***********99423335889*****988666799******************96553 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.53
     NDUFA12  35 dasqvppe 42 
                 +a++v  +
  CCE30952.1 175 KAQKVGDK 182
                 22222222 PP

>> GH101_N  Endo-alpha-N-acetylgalactosaminidase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   6.1e-06     0.055      80     123 ..      24      67 ..      21      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.1e-06
     GH101_N  80 nnifvGYDkeG.WfWeyksekvsayyqkkrveaPkkgeenelsis 123
                 +  f+GYD +G  +We+k  ++++ ++ + v++P +  + ++ +s
  CCE30952.1  24 KRFFIGYDLQGnTYWEFKLTSADTRMR-RIVNYPSRTYNSQVKVS 67 
                 578*****99846*******9999875.68999999888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1456.46
//
Query:       CCE30953.1  [L=571]
Description: uncharacterized protein CPUR_04804 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4361.46
//
Query:       CCE30954.1  [L=581]
Description: probable mfs-multidrug-resistance transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-35  121.4  45.8    3.8e-35  121.4  45.8    2.0  2  MFS_1     Major Facilitator Superfamily
    2.3e-07   30.0   8.3    2.3e-07   30.0   8.3    1.9  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4  45.8   4.3e-39   3.8e-35       3     353 .]      84     471 ..      78     471 .. 0.78
   2 !    5.0   0.9    0.0011       9.9     134     176 ..     467     509 ..     464     536 .. 0.79

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 4.3e-39
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgag 100
                 ++a+ +a+++s++++++   +++++++s+ ++ l ++l+ lg+av+ l+++++s+ +Gr +++++++l++ ++ ++ ++ a++ ++llvlr+++G+ ++
  CCE30954.1  84 VSALAVAFTSSAYSSSVL-QVGNEFHVSHEVAILGISLFVLGFAVGPLFWAPFSELYGRQKLFFITYLALTAFnAASAS-APNATALLVLRFMAGAWGS 180
                 445555566666666666.68****************************************888888888888455555.37777************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 + +++++ ++ad+f+ ++rg+a+  ++++  lG+ lgp++gg++a+++gWr+v+ + ai++  ++++ +l++pe++ +    + +e +           
  CCE30954.1 181 SPLTNAGGVVADLFTARQRGMATCAFALAPFLGPTLGPIVGGFVAEAAGWRWVMRLTAIFTGTMCIFQALVVPETYAPVLLRKRAEVLsrqtgksyrsr 279
                 ******************************************************************988999888888888888888877777777776 PP

       MFS_1 189 ..........kgtgpaplvp........awkallkdpvlwillialllfffgfsglltllpl.....ylqevlglsglllaglllallalvgailalla 264
                                    +        +w +l+k p +++  i l+++  ++++ ++ +p+     y  +  g++  l ag+l+ ++ ++g ++  ++
  CCE30954.1 280 idaaspratiM--------SrlrlnlsrPWILLFKEPIVFMTSIYLAIIYGVLYMCFAAFPIvfqapY-PQGWGWG--LGAGGLSFVGIMIG-VMIAIF 366
                 66555544441........1555555556999999997764444444444466666666666222222.5555555..44444555555555.555688 PP

       MFS_1 265 grlsdr.............lgrrrrlllallllllaalglallavtssavllllvlvl....iGfglgfv.fpsllalasdlappeeagtasglfntag 345
                 g ++d               +++ rl  a+l+++l+ +gl+++a+t+ + ++++v ++    +G gl +v  p+ ++l+++++   +a++++++  +++
  CCE30954.1 367 GTIVDNaryartaakhggvAPPESRLPPAILGAVLLPVGLFWFAWTNGTNIHWAVPMTgsgvFGAGLVLVfLPLTNYLVDSYV--IYAASVLAASAVVR 463
                 8889888888889888888888************************9999999977777454666555554555555555566..9************* PP

       MFS_1 346 slggalgp 353
                 sl ga++p
  CCE30954.1 464 SLFGAVFP 471
                 *9999987 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0011
       MFS_1 134 ailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                  ++ pl+ g+++  lg +++  + a++sl ++ + ll++   +
  CCE30954.1 467 GAVFPLFTGYMYRDLGLHWASSVPAFLSLACLPFPLLFYKYGE 509
                 57889*************************9887777774444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   8.3   2.6e-11   2.3e-07      44     247 ..     110     306 ..      77     332 .. 0.77
   2 ?   -4.0   0.1      0.56     5e+03      52     410 ..     457     478 ..     451     500 .. 0.44

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 2.6e-11
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s     l  s+f++G ++G lf  ++++ +GR+k + i+ + + + ++ +a a+   +  +l+v R+ +G       + +   ++ + +++ Rg+ +  
  CCE30954.1 110 SHEVAILGISLFVLGFAVGPLFWAPFSELYGRQKLFFITYLALTAFNAASASAP---NATALLVLRFMAGAWGSSPLTNAGGVVADLFTARQRGMATCA 205
                 555668999*********************************************...99***********7666667778899**************** PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HHHHHHTT-HH.HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH... CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPESPrylvekgkee.eakevlaklrgeedadrelaeekdsleaeqeeek 239
                 + la  +G  ++ i+g ++++  +   wr+ + l+++++ +++i+  l++PE+    + +++ e  ++++ +  r   da    a +++ l+ + ++  
  CCE30954.1 206 FALAPFLGPTLGPIVGGFVAEAAG---WRWVMRLTAIFTGTMCIFQaLVVPETYAPVLLRKRAEvLSRQTGKSYRSRIDAASPRATIMSRLRLNLSR-- 299
                 *******************99998...*****************98699****77777888777777777777666666666666666666666444.. PP

                 ..HTTHHH CS
    Sugar_tr 240 aswkells 247
                   w  l++
  CCE30954.1 300 -PWILLFK 306
                 .3444444 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 0.56
                 HHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHH CS
    Sugar_tr  52 vsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfG 150
                 +++++v +++G++f                                                                                     
  CCE30954.1 457 AASAVVRSLFGAVF------------------------------------------------------------------------------------- 470
                 44444444444433..................................................................................... PP

                 HHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHS CS
    Sugar_tr 151 ilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekaswkellssk 249
                                                                                                                    
  CCE30954.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

                 H...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS... CS
    Sugar_tr 250 tvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaa 348
                                                                                                                    
  CCE30954.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

                 CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 349 sivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiit 410
                                                                        l++ ++ 
  CCE30954.1 471 ------------------------------------------------------PLFTGYMY 478
                 ......................................................22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4401.84
//
Query:       CCE30955.1  [L=607]
Description: related to NOL1R protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-16   59.1   0.0    6.1e-10   39.1   0.1    2.6  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
  ------ inclusion threshold ------
       0.25   10.9   7.9       0.58    9.7   7.9    1.6  1  SR-25            Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.1   6.8e-14   6.1e-10       2      98 ..     233     345 ..     232     349 .. 0.75
   2 !   17.3   0.0   3.1e-07    0.0028     115     157 ..     431     472 ..     400     533 .. 0.70

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 6.8e-14
                      HHH---TT-E.EEESS-TTSHHHHHHHHHT............TTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES..-CTCCHHHHCC... CS
  Methyltr_RsmB-F   2 llLapqeeet.ilDlcaaPGgKTthiaelm............knkgtvvAvdankeRlkrvaenlkrLgvtntivlea..Darkidkvlgg... 77 
                      +lL+p++++  ++D+caaPG KTth+a ++            k ++ ++A +++++R++ +++ ++  g ++t+ + a  D  +++    +   
       CCE30955.1 233 YLLDPRPQDGdVVDACAAPGNKTTHLASILhghslssgncasKGQSIIFAFEKDARRAQTLQKMVRIAGAKDTTRIAAgqDFLQVNV--QDavy 324
                      78999999877****************986333333333322345679*****************9999996654443126655542..22334 PP

                      ..EEEEEEEE--CCGGGTTT- CS
  Methyltr_RsmB-F  78 elfDriLlDaPCsgtgvirrd 98 
                      + +  +LlD  Csg g++ rd
       CCE30955.1 325 KDVSALLLDPSCSGSGIVGRD 345
                      78999*************997 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 3.1e-07
                      HHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH- CS
  Methyltr_RsmB-F 115 klqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkr 157
                      + q  ll  a+    +   + YsTCsv+ +Ene+v+ +aL++ 
       CCE30955.1 431 SFQLTLLLHAFRF-PSATKVSYSTCSVHRQENEHVVMKALQSG 472
                      4555555554443.4456788*******************975 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.9   6.5e-05      0.58      75     105 ..     360     390 ..     354     406 .. 0.43

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 6.5e-05
       SR-25  75 ssssssssssssddrkkrgkkkdkkkkkkkk 105
                 ssssssssssss ++kk++  ++  ++++k+
  CCE30955.1 360 SSSSSSSSSSSSAQQKKKKPPREDPSNQRKR 390
                 2222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       981  (0.0547158); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 4340.13
//
Query:       CCE30956.1  [L=598]
Description: uncharacterized protein CPUR_04807 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-63  212.9   0.0    9.4e-63  212.3   0.0    1.3  1  DUF1996   Domain of unknown function (DUF1996)
    1.2e-17   63.9   9.2    2.4e-17   62.9   9.2    1.6  1  WSC       WSC domain


Domain annotation for each model (and alignments):
>> DUF1996  Domain of unknown function (DUF1996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.3   0.0     1e-66   9.4e-63       1     233 []      44     304 ..      44     304 .. 0.88

  Alignments for each domain:
  == domain 1  score: 212.3 bits;  conditional E-value: 1e-66
     DUF1996   1 DPivspgevsshvHtivGgsafnasltyeelrkskctscevkeDkSnYWvptLYfk.kengsferveqkggllvYYllekkkekkvtafpkgfrmiaGd 98 
                 DPi+spg+vsshvHt++Ggs+f+  +t ++l +s+c+++ vk D+SnYW+p+LYfk +++g++e ve+   ++vYY++e + ++++++fp g+++++Gd
  CCE30956.1  44 DPIISPGKVSSHVHTVMGGSGFSLGSTGKDLMASNCSTALVKGDNSNYWFPSLYFKdPKTGKLEDVEMF-YANVYYFFEGS-NDDIKPFPVGLSIVVGD 140
                 9******************************************************9889*******844.788*****665.677************** PP

     DUF1996  99 ptlrekslaqka............isftclesee.................keeaeeetkelpkktkkkc...asglraeilfpsCwdgknldspdhks 165
                 p+lr++ ++ ++            i++tc +++                  ++ ++ e  ++p   + +c   as lr +i+fpsC++  +   ++ k+
  CCE30956.1 141 PNLRTPPKNGASsnldpskgpvnpIKWTCPRTNLnqaaypagsngmmagmpDAINKGEGVGFP---DVNCdgyASPLRGDIHFPSCYNPAEG-LTNYKK 235
                 ****6654443334556666777788****9977899********999976333457799999...567977678**************994.46789* PP

     DUF1996 166 hvaypskveesegkCpeshpvrlpqlfyeviwdtekfnkk.edgk.sqpfvlsngdktGyglHaDFinGW 233
                 ++a+ps+ ++ + +Cp++h +++p+lf+ev+w+t  f+++ + gk +qpfvlsngd+tGy+ HaDF+ +W
  CCE30956.1 236 NMAFPSESSNGRLDCPKGH-IHVPHLFLEVYWNTPLFKDRwTPGKgDQPFVLSNGDATGYSNHADFMAAW 304
                 *****999989********.*******************99555559*********************** PP

>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   9.2   2.7e-21   2.4e-17       1      82 []     481     560 ..     481     560 .. 0.95

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 2.7e-21
         WSC   1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82 
                 y GC++d+ ++r l g+ + +   +++++C+++Cka+g+++a++e+g++CyCgn+l  +++ ++s+ C+++C+Gd+++tCGg
  CCE30956.1 481 YAGCFKDT-RTRVLNGKVRPNLGRISNKNCVTYCKAAGFTLAATEYGGQCYCGNELIGSQKLDDSE-CHVACEGDEADTCGG 560
                 89****99.7788888889999************************************99999777.**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.20s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 4854.16
//
Query:       CCE30957.1  [L=235]
Description: uncharacterized protein CPUR_04808 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-53  179.7   0.0    7.6e-33  114.5   0.0    2.1  2  Velvet    Velvet factor


Domain annotation for each model (and alignments):
>> Velvet  Velvet factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   9.6e-22   1.7e-17       3      72 ..      23      92 ..      21      99 .. 0.87
   2 !  114.5   0.0   4.2e-37   7.6e-33     141     248 ..      96     200 ..      90     203 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 9.6e-22
                EEEEE---EEE---SS-S-----BS--EEEEEEEETTT-SB--GGG---TTEEEEEEEEETTSSSB--EE CS
      Velvet  3 LevvQqPkrARmCgfgdkdrrpidPppvvqLrvtdaetnsevdveeldssffvvtvdLwsedgtkevnlv 72
                L ++QqP +AR+Cgfgd+drr idPpp++q+ + +++  + +  + l++ ++v+++++++e gt++++ +
  CCE30957.1 23 LSMRQQPRAARACGFGDRDRRVIDPPPIIQMSIHSQHLTKDEARKYLRYGSYVMNCSICDETGTRDASFM 92
                889********************************84444445788******************998875 PP

  == domain 2  score: 114.5 bits;  conditional E-value: 4.2e-37
                 ---EESEEE--EEE-EEEE-TT--EEEEEE---EEESS-EEEEEEEEEEE-B-S--B--S..SEEEEEEEEE---EEEE-TTT--------HHHHHHHH CS
      Velvet 141 skltrnLiGslvasafrlkdpedkpgifFvfqDLSVRteGtFrLrfrlvnvgaeavaveekegsapvlaevfSdpFtVysakkFpGvlesTaLskalak 239
                  + +r L+Gsl+ ++f+ +d ++++g+fF+f+DLS Rt+G FrL+f+l+ +     ++  +  ++pvl e+++dpF+ ysak+FpG+l+s++L+k l +
  CCE30957.1  96 YQHQRRLMGSLIGTPFVAQDDHGDEGCFFCFSDLSCRTPGAFRLKFTLIMIDP---SRAGQVRHFPVLTELITDPFHAYSAKDFPGMLPSSSLAKRLRE 191
                 5789*************************************************...44445689*********************************** PP

                 TT----XXX CS
      Velvet 240 qGikipiRk 248
                 qG++i+i+k
  CCE30957.1 192 QGCNISIKK 200
                 *******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1682.18
//
Query:       CCE30958.1  [L=425]
Description: uncharacterized protein CPUR_04809 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.047   13.4   0.3       0.27   11.0   0.3    2.3  1  PSI_integrin  Integrin plexin domain


Domain annotation for each model (and alignments):
>> PSI_integrin  Integrin plexin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   1.5e-05      0.27      15      27 ..     341     353 ..     340     365 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.5e-05
  PSI_integrin  15 sgpsCaWCkqenf 27 
                   s+psC WC+q++ 
    CCE30958.1 341 SKPSCNWCTQTTM 353
                   78********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3020.34
//
Query:       CCE30959.1  [L=1342]
Description: related to multidrug resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-97  326.9  42.5    8.8e-50  169.9  14.5    2.2  2  ABC_membrane  ABC transporter transmembrane region
    3.4e-66  221.9   0.0    6.6e-32  110.9   0.0    2.7  2  ABC_tran      ABC transporter
    6.7e-13   48.6   0.0    0.00061   19.3   0.0    3.8  3  SMC_N         RecF/RecN/SMC N terminal domain
    9.6e-08   31.7   0.3     0.0011   18.6   0.1    3.0  3  AAA_29        P-loop containing region of AAA domain
    1.1e-07   31.9   0.1      0.022   14.7   0.0    3.5  3  RsgA_GTPase   RsgA GTPase
    1.3e-05   25.7   5.1       0.12   12.8   0.5    3.8  2  AAA_16        AAA ATPase domain
    2.4e-05   23.4   3.4      0.043   12.6   0.0    2.8  3  ABC_ATPase    Predicted ATPase of the ABC class
    5.6e-05   23.0   1.0       0.37   10.4   0.0    2.7  3  AAA_15        AAA ATPase domain
    0.00012   22.5   1.3        2.4    8.6   0.0    4.4  3  AAA           ATPase family associated with various cellular 
    0.00021   21.6   1.6       0.47   10.7   0.1    3.7  2  AAA_22        AAA domain
    0.00035   20.5   0.6       0.44   10.3   0.0    3.2  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00036   20.2   0.1       0.32   10.5   0.0    2.8  2  AAA_25        AAA domain
    0.00069   18.9   0.0        1.8    7.6   0.0    3.0  2  G-alpha       G-protein alpha subunit
     0.0035   17.5   1.6        4.8    7.5   0.2    3.6  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
     0.0046   16.7   3.7        2.6    7.7   0.2    3.7  3  AAA_30        AAA domain
     0.0055   17.0   0.5        0.6   10.3   0.0    2.8  2  AAA_28        AAA domain
     0.0059   17.0   1.3         12    6.3   0.5    3.7  3  AAA_17        AAA domain
     0.0076   16.8   0.0        4.8    7.7   0.0    3.0  2  AAA_18        AAA domain
     0.0079   16.3   1.5        7.6    6.6   0.0    3.2  3  DUF87         Helicase HerA, central domain
     0.0091   15.5   0.0        1.7    8.1   0.0    2.5  2  AAA_7         P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.011   15.7   0.8         11    6.0   0.0    3.6  3  AAA_5         AAA domain (dynein-related subfamily)
      0.013   16.0   0.6        1.4    9.3   0.0    2.9  3  AAA_23        AAA domain
      0.016   14.5   0.0        8.1    5.7   0.0    2.8  2  Zeta_toxin    Zeta toxin
      0.019   15.1   0.0         11    6.2   0.0    2.8  2  AAA_33        AAA domain
      0.025   13.7   0.1        7.3    5.7   0.0    3.1  3  DUF815        Protein of unknown function (DUF815)
      0.032   14.0   0.0        2.1    8.0   0.0    2.5  2  AAA_24        AAA domain
       0.06   13.2   0.1       0.92    9.4   0.0    2.7  2  APS_kinase    Adenylylsulphate kinase
        0.1   12.5   0.0       0.73    9.7   0.0    2.2  2  Rad17         Rad17 P-loop domain
       0.12   12.7   0.5         23    5.4   0.0    3.7  3  RNA_helicase  RNA helicase
        1.4    9.0   3.3         18    5.5   0.0    3.0  2  MMR_HSR1      50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.0  20.0   1.9e-50   1.1e-47       3     273 ..     103     379 ..     100     380 .. 0.96
   2 !  169.9  14.5   1.5e-52   8.8e-50       2     273 ..     771    1047 ..     770    1048 .. 0.96

  Alignments for each domain:
  == domain 1  score: 163.0 bits;  conditional E-value: 1.9e-50
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHSS.TCCHH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHH CS
  ABC_membrane   3 liillailagvlsplfplvlgrildtlldk.gdpet.......ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsf 91 
                   ++ ++a+++g++ pl+ +++g++ +t+  +  ++e+        +l++y l++++l++++fi++++ +  +++tge++s ++r++++ +++rq+++f
    CCE30959.1 103 VSAVCAVASGAALPLMTILFGNLQNTFQHFfFSAESmtydafvDELSKYVLYFVYLAIGEFIVTYICTVGFIYTGEHISAKIRAQYLASCMRQNIGF 199
                   6789********************99988884444455779999***************************************************** PP

                   HHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  92 fdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEsls 188
                   fd+  +Ge+++r+t d++ ++dg++ek++l + +l+tf+++++++f   wkltl+l+++++ +++ +a+ + ++ k +k+  +a+a+ +s+a E++s
    CCE30959.1 200 FDKLGAGEVTTRITADTNLIQDGISEKVSLTLAALATFITAFVIGFANYWKLTLILFSTVVALMVNIAIGSTFMLKHNKNSLEAYAQGGSLADEVVS 296
                   ************************************************************************************************* PP

                   THHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 189 girtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                    ir  +afg +++  +++++ l++a+  g ++  + +++ + ++l+++l y la+w G++++ +g + +++  v++ ++++++ga
    CCE30959.1 297 SIRNAIAFGTQDRLAKQYDQHLRKAEYYGSRVKGTMSVMVAGMMLIMFLNYGLAFWQGSHYIVQGIIPLSK--VLIIMMSVMIGA 379
                   ***********************************************************************..777777778776 PP

  == domain 2  score: 169.9 bits;  conditional E-value: 1.5e-52
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS..TCCHH......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST CS
  ABC_membrane    2 iliillailagvlsplfplvlgrildtlldk..gdpet......ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqp 88  
                    ++++ +++++g+ +p  ++++++ + tl++   +   t       ++ ++s ++l+l+++qfi+   q   +  ++e+l++r+r ++f++ilrq+
    CCE30959.1  771 VFGLAFSVICGGGNPTAAVFFAKQIVTLSQPvtA---TngpqikKDSDFWSAMYLMLAFVQFIAFSSQGIAFALCSEKLIRRVRDRAFRAILRQD 862 
                    67899***********************985331...246788899************************************************* PP

                    HHHHHH..SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   89 msffdt..nsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakass 181 
                    ++ffd+  n++G l+s l++++  +  + g +lg++++ ++t++++ ++++ +gwkl+lv++a++p+++ + +++  +l  ++++ + a+a + +
    CCE30959.1  863 VAFFDKdeNTAGALTSFLSTETTHVAGLSGVTLGTLLMMMVTLISASVLGLAIGWKLSLVCIATMPVLLGCGFFRFWLLAHFQRRSKAAYASSAT 957 
                    *********************************************************************************************** PP

                    HHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane  182 vaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273 
                    +a E++s irtV a++re+ +l+++ ++l   +++++ + + +++l +++q+l +l++al +w+G+tl+ + e+++ +  +fl+++a++fga
    CCE30959.1  958 FASEAISSIRTVAALTREQDVLRQYSESLAVQQRRSLISVLKSSALYAASQSLLFLCFALGFWYGGTLIGKREYDLFQ--FFLCFMAVIFGA 1047
                    *********************************************************************888888878..*********997 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.0   7.3e-34   4.4e-31       2     137 .]     448     605 ..     447     605 .. 0.89
   2 !  110.9   0.0   1.1e-34   6.6e-32       1     137 []    1115    1266 ..    1115    1266 .. 0.90

  Alignments for each domain:
  == domain 1  score: 108.2 bits;  conditional E-value: 7.3e-34
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esdee 84 
                 ++v+l++ +g+++a+vG +G+GKSt++ l+ + ++p +G++ ldgk++++ +l++lr++++ ++qep+lf ++ + +n                    +
  CCE30959.1 448 DDVTLEIPAGKTTALVGASGSGKSTIVGLVERFYDPVQGSVFLDGKNIETLNLRWLRQQMALVSQEPTLFGTT-ILKNishgligtqyeneseeV---Q 542
                 89********************************************************************999.88888*******988765440...1 PP

                 ............HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 ............iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                             +++++s l   +  +t+v++++  LSgGqkqr+a+ara++++pk+lllDE+t+
  CCE30959.1 543 rdlvikaavmanAHDFISALPEGY--ETNVGERGFLLSGGQKQRIAIARAVVSDPKILLLDEATS 605
                 455555555555888888888777..9999*********************************96 PP

  == domain 2  score: 110.9 bits;  conditional E-value: 1.1e-34
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79  
                  l+ ++l++++g+ va+vG +G+GKSt ++ll + ++p  G i +d+k+++  +++ +r++i+ ++qep+l +++ +r+n                  
  CCE30959.1 1115 LRGLNLTVRPGQYVALVGASGCGKSTTIALLERFYDPLFGGIFVDNKEISGLNINDYRSHIALVSQEPTLYQGT-IRDNivlgsaneevtdqaveha 1210
                  5789*********************************************************************9.********99887665555443 PP

                  HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                   ++++i++++ +l      +tvv+s+++ LSgGqkqrva+aral+++pk+lllDE+t+
  CCE30959.1 1211 CREANIYDFIISLPEGF--NTVVGSKGALLSGGQKQRVAIARALIRDPKILLLDEATS 1266
                  33344777777777776..9************************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   7.3e-06    0.0043     135     211 ..     512     647 ..     447     654 .. 0.66
   2 ?    0.9   0.0      0.45   2.7e+02      26      41 ..    1127    1142 ..    1118    1149 .. 0.84
   3 !   19.3   0.0     1e-06   0.00061     118     209 ..    1202    1306 ..    1155    1314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.3e-06
                 T...............................................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTT CS
                 x...............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e...............................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaa 170
                 +                                                               lLSgG+k+ +a+a       v+   + llDe  +a
  CCE30959.1 512 QeptlfgttilknishgligtqyeneseevqrdlvikaavmanahdfisalpegyetnvgergfLLSGGQKQRIAIARA----VVSDPKILLLDEATSA 606
                 23444444444444444444444455555555555555555555555555555566666666668*******8888754....456666899******* PP

                 S-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 171 LDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 LD k    v   l+++      i i++r  ++++a+++v +
  CCE30959.1 607 LDTKSEGVVQAALETAAAGRTTITIAHRLSTIRDAHNIVVM 647
                 ***********************************998865 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.45
                  EEEEEESTTSSHHHHH CS
                  xxxxxxxxxxxxxxxx RF
       SMC_N   26 ftaivGpNGSGKsnll 41  
                    a+vG+ G+GKs  +
  CCE30959.1 1127 YVALVGASGCGKSTTI 1142
                  5799*********865 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 1e-06
                  E-HHHHHHHHHCTT-STT.................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-S CS
                  xxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  118 vtkkevsellesagiske.................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivisl 197 
                  vt + v++  ++a+i+                   lLSgG+k+ va+a       ++   + llDe  +aLD +  + v   l+++ k    i +++
  CCE30959.1 1202 VTDQAVEHACREANIYDFiislpegfntvvgskgaLLSGGQKQRVAIARA----LIRDPKILLLDEATSALDSESEHVVQAALDKAAKGRTTIAVAH 1294
                  455555555555555544666666666666666669*******9998754....356666899********************************** PP

                  SHHHCCC-SCEE CS
                  xxxxxxxxxxxx RF
       SMC_N  198 reemlekadklv 209 
                  r  +++kad ++
  CCE30959.1 1295 RLSTIQKADVIY 1306
                  ********9987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.9e-06    0.0011      13      39 ..     448     474 ..     445     477 .. 0.85
   2 ?   -2.1   0.0       5.5   3.3e+03      36      49 ..     636     649 ..     636     652 .. 0.85
   3 !    9.4   0.0    0.0014      0.86      17      39 ..    1120    1142 ..    1113    1146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.9e-06
      AAA_29  13 dghtieidlkg.atlltGpsGsGKSTll 39 
                 d+ t+ei  +g +t l+G+sGsGKST++
  CCE30959.1 448 DDVTLEIP-AGkTTALVGASGSGKSTIV 474
                 67888997.555**************97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.5
      AAA_29  36 STllDAiqalLvpa 49 
                 ST+ DA++++ ++ 
  CCE30959.1 636 STIRDAHNIVVMSG 649
                 9*******998865 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0014
      AAA_29   17 ieidlkgatlltGpsGsGKSTll 39  
                  +++++ + + l+G+sG GKST +
  CCE30959.1 1120 LTVRPGQYVALVGASGCGKSTTI 1142
                  5566666899***********87 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.7e-05     0.022      20     117 ..     370     475 ..     366     484 .. 0.76
   2 ?    3.9   0.0     0.077        46      81     120 ..     865     903 ..     840     912 .. 0.79
   3 !    8.8   0.0    0.0023       1.4      99     119 ..    1125    1145 ..    1109    1155 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.7e-05
                  EEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH.......HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTT CS
  RsgA_GTPase  20 livvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeee.......eleelkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSG 109
                  +i++s+    ++l  +   + ++ ++ +    ++n iD ++  +       ++e+l+ +++  +++ ++ s  +   +++++ ++   kt++lvG SG
   CCE30959.1 370 IIMMSVMIGAFQLGNVAPNIQAFTTAIAAAAKIFNTIDRVSPLDptddkgdKIENLQGNIRLENIKHIYPSRPEVVVMDDVTLEIPAgKTTALVGASG 467
                  5666666666666666666666666666666667777776666666666778888888999999999999999999999999888777********** PP

                  SSHHHHHH CS
  RsgA_GTPase 110 vGKStLin 117
                   GKSt++ 
   CCE30959.1 468 SGKSTIVG 475
                  *****985 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.077
                  E--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  81 lvsaktkegleelkellkdktsvlvGqSGvGKStLinall 120
                  +   k+++++ +l++ l+ +t+ ++G SGv   tL+ +++
   CCE30959.1 865 FF-DKDENTAGALTSFLSTETTHVAGLSGVTLGTLLMMMV 903
                  44.455788999******************9999987665 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0023
                   TSEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase   99 dktsvlvGqSGvGKStLinal 119 
                   ++ ++lvG SG GKSt i  l
   CCE30959.1 1125 GQYVALVGASGCGKSTTIALL 1145
                   4899************99877 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.5    0.0002      0.12      25      63 ..     458     497 ..     447     708 .. 0.83
   2 !   12.6   0.4   0.00023      0.14      24      59 ..    1124    1161 ..    1115    1310 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.0002
      AAA_16  25 elvllsGesGvGKsslvrellralekd.ggiflrgkcdql 63 
                   + l+G+sG+GKs++v  + r +    g +fl gk+ + 
  CCE30959.1 458 KTTALVGASGSGKSTIVGLVERFYDPVqGSVFLDGKNIET 497
                 67899************88886554443568888888776 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00023
      AAA_16   24 p.elvllsGesGvGKsslvrellralekd..ggiflrgk 59  
                  p ++v l+G+sG+GKs+ +  l r +     ggif+  k
  CCE30959.1 1124 PgQYVALVGASGCGKSTTIALLERFYD-PlfGGIFVDNK 1161
                  3379***************77775443.33555554444 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.7     1e+03     241     264 ..     453     477 ..     451     487 .. 0.78
   2 !   10.4   0.1   0.00033       0.2     301     397 ..     554     649 ..     548     699 .. 0.70
   3 !   12.6   0.0   7.1e-05     0.043     298     352 ..    1212    1267 ..    1200    1284 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.7
                 EE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAl 264
                  ip G  t++vG    GKsT++  +
  CCE30959.1 453 EIPAGkTTALVGASGSGKSTIVGLV 477
                 58999899************87544 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00033
                 --TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS CS
  ABC_ATPase 301 DispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvgg 397
                 +   Fi++LPeg +t+        SG   q  +i++a+  + k+lL+DE tsA         +q+ ++    + ++ +  +++l +  +   i+v++g
  CCE30959.1 554 NAHDFISALPEGYETNvGERGFLLSGGQKQRIAIARAVVSDPKILLLDEATSALDTKS-EGVVQAALETA-AAGRTTITIAHRLSTIRDAHNIVVMSG 649
                 5678***********954445568*****************************76544.33333333222.222333344444444444444555554 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 7.1e-05
                  EEE--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase  298 kgvDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsA 352 
                  ++++i  Fi +LPeg +t   +  +  SG   q ++i++al ++ k+lL+DE tsA
  CCE30959.1 1212 REANIYDFIISLPEGFNTVvGSKGALLSGGQKQRVAIARALIRDPKILLLDEATSA 1267
                  6789**************945555678****************************9 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00079      0.47      18      50 ..     453     484 ..     449     541 .. 0.85
   2 ?   -2.1   0.5       4.1   2.4e+03     156     185 ..     682     716 ..     653     761 .. 0.49
   3 !   10.4   0.0   0.00063      0.37      26      73 ..    1128    1171 ..    1119    1219 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00079
      AAA_15  18 eidlseeltvliGkNnsGKSsilealdlFlnnk 50 
                 ei+  + +t l+G+ +sGKS+i+ + + F +  
  CCE30959.1 453 EIPAGK-TTALVGASGSGKSTIVGLVERFYDPV 484
                 788889.****************9999998755 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.1
      AAA_15 156 ekekeelkidkedlkklikkleeslkkee.....e 185
                 e+  ee++  +e+ +klik++++  + ++      
  CCE30959.1 682 ELTAEETERINEEEEKLIKRMSNMASTKDghftaD 716
                 33333444444444444444444444444333330 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00063
      AAA_15   26 tvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifenise 73  
                    l+G+ ++GKS+ + +l+ F +      +  i++++++++  + ++ 
  CCE30959.1 1128 VALVGASGCGKSTTIALLERFYDPL----FGGIFVDNKEISGLNINDY 1171
                  689********************77....4555555555554444433 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2     0.033        20      37      94 ..     561     624 ..     460     654 .. 0.67
   2 ?    3.0   0.0      0.22   1.3e+02       2      17 ..    1129    1144 ..    1128    1174 .. 0.87
   3 !    8.6   0.0    0.0041       2.4      16     118 ..    1208    1302 ..    1205    1310 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.033
                 S.............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHH CS
         AAA  37 k.............yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteld 94 
                               ++  + +k r  +++a  +  p+il++DE+ +   ++      +e  v+++L t+  
  CCE30959.1 561 AlpegyetnvgergFLLSGGQKQRIAIARAVVSD-PKILLLDEATSALDTK------SEGVVQAALETAAA 624
                 2555555555555566777788888888888887.9********9999998......45555555555444 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.22
                  EEESSTTSSHHHHHHH CS
         AAA    2 llyGppGtGKTllaka 17  
                   l+G  G+GK++++  
  CCE30959.1 1129 ALVGASGCGKSTTIAL 1144
                  699********99865 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0041
                  HHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.....TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEE CS
         AAA   16 kavakelgvefleisgsellskyvgesekkirelfkeakeka.....kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivig 107 
                  +  ++e++++ + is++e ++ +vg + + +++  k+  + a     +p+il++DE+ +   s+      +e  v+++L ++ +g ++       i+
  CCE30959.1 1208 EHACREANIYDFIISLPEGFNTVVGSKGALLSGGQKQRVAIAralirDPKILLLDEATSALDSE------SEHVVQAALDKAAKGRTT-------IA 1291
                  5678899999999999999999999999988888777444445677889***********9999......455555555555544444.......77 PP

                  EESSGGGSTHH CS
         AAA  108 atnrpdkldpa 118 
                  +++r +++++a
  CCE30959.1 1292 VAHRLSTIQKA 1302
                  77777777666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.2    0.0086       5.2       8      32 ..     460     484 ..     456     631 .. 0.80
   2 !   10.7   0.1   0.00079      0.47       6      30 ..    1126    1150 ..    1122    1282 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0086
      AAA_22   8 lvvtGesGtGKTtllrrlleqldee 32 
                 ++++G sG+GK+t +  + + +d +
  CCE30959.1 460 TALVGASGSGKSTIVGLVERFYDPV 484
                 789**********999888888654 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00079
      AAA_22    6 gilvvtGesGtGKTtllrrlleqld 30  
                  + ++++G sG+GK+t+++ l + +d
  CCE30959.1 1126 QYVALVGASGCGKSTTIALLERFYD 1150
                  56799**************999885 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0085       5.1       2      21 ..     460     479 ..     459     505 .. 0.80
   2 ?   -3.1   0.0       8.6   5.1e+03     236     270 ..     576     607 ..     566     610 .. 0.83
   3 !   10.3   0.0   0.00074      0.44       3      59 ..    1129    1192 ..    1127    1230 .. 0.76
   4 ?   -1.7   0.0       3.3   1.9e+03     237     268 ..    1238    1266 ..    1235    1271 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0085
      AAA_21   2 nvliGpNgsGKSnLLdaldl 21 
                 ++l+G+ gsGKS++  + + 
  CCE30959.1 460 TALVGASGSGKSTIVGLVER 479
                 89***********9766655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.6
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngL 270
                  lS G+k+ +a++ a+ +++   ++ll+DE  + L
  CCE30959.1 576 LLSGGQKQRIAIARAVVSDP---KILLLDEATSAL 607
                 67999999988888888888...99****966655 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00074
      AAA_21    3 vliGpNgsGKSnLLdaldllarl.......drdvegltdelsggggirkipslldlydpeipfe 59  
                  +l+G+ g+GKS+ + +l+ + +        d+  +++ ++++ +++i+ ++ +++ly+ +i+++
  CCE30959.1 1129 ALVGASGCGKSTTIALLERFYDPlfggifvDNKEISGLNINDYRSHIALVSQEPTLYQGTIRDN 1192
                  79****************9999966666666666666666666666666666666666666655 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 3.3
      AAA_21  237 lSdGtkrllalltallralkkgsllliDEpEn 268 
                  lS G+k+  a++ al+r++   ++ll+DE  +
  CCE30959.1 1238 LSGGQKQRVAIARALIRDP---KILLLDEATS 1266
                  7999999999999999999...9******555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00054      0.32      30      50 ..     454     474 ..     433     477 .. 0.91
   2 !    6.4   0.0    0.0099       5.9      21      49 ..    1114    1141 ..    1095    1146 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00054
      AAA_25  30 lpagelallaGapgtGKttla 50 
                 +pag++++l+Ga+g+GK+t++
  CCE30959.1 454 IPAGKTTALVGASGSGKSTIV 474
                 79*****************85 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0099
      AAA_25   21 prrwlvkgllpagelallaGapgtGKttl 49  
                   +r l   ++  g  ++l+Ga+g+GK+t 
  CCE30959.1 1114 VLRGLNLTVR-PGQYVALVGASGCGKSTT 1141
                  5555555554.59999***********96 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0041       2.5      27      50 ..     461     484 ..     449     764 .. 0.74
   2 !    7.6   0.0    0.0031       1.8      26      51 ..    1128    1153 ..    1121    1200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0041
                 EEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha  27 lllGqseSGKsTilkqlkllykkg 50 
                  l+G+s+SGKsTi+  ++++y++ 
  CCE30959.1 461 ALVGASGSGKSTIVGLVERFYDPV 484
                 589***********9999999765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0031
                  EEEEESTTSSHHHHHHHHHHHCS--- CS
     G-alpha   26 llllGqseSGKsTilkqlkllykkgf 51  
                  + l+G+s++GKsT++  l+++y++ f
  CCE30959.1 1128 VALVGASGCGKSTTIALLERFYDPLF 1153
                  579******************98864 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1     0.011       6.3      62      86 ..     593     617 ..     560     621 .. 0.78
   2 !    7.5   0.2     0.008       4.8      63      86 ..    1255    1278 ..    1217    1282 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.011
     SbcCD_C  62 palrlvfLDEAFsklDeesiatlle 86 
                 +++++++LDEA s lD +s   + +
  CCE30959.1 593 SDPKILLLDEATSALDTKSEGVVQA 617
                 5689************998766655 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.008
     SbcCD_C   63 alrlvfLDEAFsklDeesiatlle 86  
                  ++++++LDEA s lD+es + + +
  CCE30959.1 1255 DPKILLLDEATSALDSESEHVVQA 1278
                  589*************98776655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0062       3.7      20      44 ..     459     483 ..     453     494 .. 0.83
   2 ?   -2.1   0.1       4.6   2.7e+03      84     114 ..     590     620 ..     538     634 .. 0.66
   3 !    7.7   0.2    0.0044       2.6      16      45 ..    1123    1152 ..    1118    1292 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0062
      AAA_30  20 vavltGpAGtGKttalkalreawea 44 
                 +++l+G+ G+GK+t+++ +++ ++ 
  CCE30959.1 459 TTALVGASGSGKSTIVGLVERFYDP 483
                 6899*************99988875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.6
      AAA_30  84 arlepgtllivDEagmvdtkqlaallkaaek 114
                 a +++ ++l+ DEa  +  ++ + +++aa +
  CCE30959.1 590 AVVSDPKILLLDEATSALDTKSEGVVQAALE 620
                 4455557888888877644444444444433 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0044
      AAA_30   16 sgdrvavltGpAGtGKttalkalreaweaa 45  
                   + ++++l+G+ G GK+t+++ l++ ++  
  CCE30959.1 1123 RPGQYVALVGASGCGKSTTIALLERFYDPL 1152
                  5567999**************999988755 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1       0.1        61       3      17 ..     461     475 ..     459     488 .. 0.86
   2 !   10.3   0.0     0.001       0.6       2      21 ..    1128    1147 ..    1127    1158 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.1
      AAA_28   3 vitGgestGKTtlle 17 
                 +++G++++GK+t++ 
  CCE30959.1 461 ALVGASGSGKSTIVG 475
                 799*********985 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.001
      AAA_28    2 ivitGgestGKTtlleaLaa 21  
                  ++++G++++GK+t+++ L++
  CCE30959.1 1128 VALVGASGCGKSTTIALLER 1147
                  799************99985 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.15        92       1      18 [.     463     479 ..     463     501 .. 0.84
   2 ?    6.3   0.5      0.02        12      14      99 ..     637     732 ..     624     747 .. 0.63
   3 ?    3.2   0.0      0.19   1.1e+02       1      19 [.    1131    1149 ..    1131    1193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.15
                 EE-TTSSHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvek 18 
                 +G  GsGK+t++  lve+
  CCE30959.1 463 VGASGSGKSTIV-GLVER 479
                 79********99.55554 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.02
                 HHHHHHTEEEEEHHHHHHHHHHTTTS.HSSHHHHC...TSHHHHHHHHHHHHHHHHHHHH.......HSSEEEEEE-SEEEETTEEEESSHHHHHHH CS
      AAA_17  14 klvekygfthlsaGdllreeakrggl.akardemr...klpleekkelqkeaaekiaeea.......kkkgvlvdghprikeqagfldglpkevlee 99 
                 ++ +  ++ ++s G ++ +  ++++l +k+  +++     ++   +el++e  e+i+ee+       +++    dgh++ + ++ + d++++ + ++
  CCE30959.1 637 TIRDAHNIVVMSGGRIMEQG-SHDELlEKQGAYYKlvsAQNIAAAEELTAEETERINEEEeklikrmSNMASTKDGHFTADPDDNIADKMQRSTTRQ 732
                 55667788899988888544.55555244444444444234444555555555555554434444335667899****9999999999999887655 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.19
                  EE-TTSSHHHHHHHHHHHH CS
      AAA_17    1 lGgPGsGKgtqceklveky 19  
                  +G  G+GK+t ++ l + y
  CCE30959.1 1131 VGASGCGKSTTIALLERFY 1149
                  79*********97776655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.035        21       3      20 ..     462     479 ..     461     572 .. 0.76
   2 !    7.7   0.0     0.008       4.8       1      31 [.    1128    1171 ..    1128    1186 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.035
      AAA_18   3 ltGtpGvGKttlakeLsk 20 
                 l G++G+GK+t+   +++
  CCE30959.1 462 LVGASGSGKSTIVGLVER 479
                 89**********987743 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.008
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf...............gvnlrdv 31  
                  ++l G++G+GK+t    L++   +               g n++d+
  CCE30959.1 1128 VALVGASGCGKSTTIALLERF--YdplfggifvdnkeisGLNINDY 1171
                  6899************99543..34455555555556666666665 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.013       7.6      26      42 ..     460     476 ..     448     491 .. 0.84
   2 ?   -0.1   0.3       1.4   8.4e+02     149     199 ..     683     730 ..     597     758 .. 0.52
   3 ?    6.2   0.0     0.016       9.6      26      43 ..    1128    1145 ..    1110    1152 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
       DUF87  26 lAilgsTGsGKSntvav 42 
                 +A +g +GsGKS+ v++
  CCE30959.1 460 TALVGASGSGKSTIVGL 476
                 799***********985 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.4
       DUF87 149 elkkekeelrklknqaiarlldkledllrkggsf.snsstdliallleklek 199
                       +e+ +  n+ +++l+++ +++ +++  + +++++d+ia+  +  + 
  CCE30959.1 683 L----TAEETERINEEEEKLIKRMSNMASTKDGHfTADPDDNIADKMQRSTT 730
                 2....23555555555555555555555544443234444444333333333 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.016
       DUF87   26 lAilgsTGsGKSntvavL 43  
                  +A +g +G GKS+t+a+L
  CCE30959.1 1128 VALVGASGCGKSTTIALL 1145
                  799************997 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.036        21      31      50 ..     455     474 ..     446     485 .. 0.85
   2 !    8.1   0.0    0.0029       1.7      15      51 ..    1107    1143 ..    1097    1151 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.036
       AAA_7  31 knkkpvllvGptGtGKtvii 50 
                  ++k + lvG +G+GK++i+
  CCE30959.1 455 PAGKTTALVGASGSGKSTIV 474
                 5789999***********98 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0029
       AAA_7   15 ptvdtvrysyllelllknkkpvllvGptGtGKtviik 51  
                  pt  +v +   l+l ++ ++ v lvG +G+GK+++i 
  CCE30959.1 1107 PTRANVPVLRGLNLTVRPGQYVALVGASGCGKSTTIA 1143
                  566666666778999999****************997 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.018        11       4      23 ..     462     481 ..     460     500 .. 0.84
   2 ?   -2.6   0.0       8.2   4.9e+03      82     125 ..     632     686 ..     629     702 .. 0.74
   3 ?    5.7   0.0     0.022        13       2      22 ..    1128    1148 ..    1127    1155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.018
                 EE--SSSSHHHHHHHGGGGB CS
       AAA_5   4 LvGppGtgKselaerlaaal 23 
                 LvG++G+gKs+++  + +++
  CCE30959.1 462 LVGASGSGKSTIVGLVERFY 481
                 9************9998887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.2
                 HHHHHHHHHSSEEE..-SSSEEE---................-EEEEEESS--.. CS
       AAA_5  82 lnsLlslleerrllleeggelvkakndd.ller.........frviatanpld.r 125
                 + +L ++ +   + +++gg+ +   + d lle+          + ia+a++l   
  CCE30959.1 632 AHRLSTIRDAHNIVVMSGGRIMEQGSHDeLLEKqgayyklvsAQNIAAAEELTaE 686
                 6778888899999999999999999999988888999777777777777776652 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.022
                  EEEE--SSSSHHHHHHHGGGG CS
       AAA_5    2 vlLvGppGtgKselaerlaaa 22  
                  v LvG++G+gKs+ +  l ++
  CCE30959.1 1128 VALVGASGCGKSTTIALLERF 1148
                  679**********99988876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0024       1.4       3      36 ..     430     474 ..     428     476 .. 0.71
   2 ?   -1.8   0.1       6.2   3.7e+03     175     192 ..     675     698 ..     624     747 .. 0.66
   3 ?    3.5   0.0      0.15        87      23      38 ..    1129    1144 ..    1115    1173 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0024
      AAA_23   3 kienfrsf..........rdqeidF.skgltlItGpNGaGKTTil 36 
                 ++en++ +          +d++++    + t+++G  G+GK+Ti+
  CCE30959.1 430 RLENIKHIypsrpevvvmDDVTLEIpAGKTTALVGASGSGKSTIV 474
                 566666655655555555666666655689*************96 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 6.2
      AAA_23 175 l......eqekekekeleeleeel 192
                 +      e   e+ ++++e ee+l
  CCE30959.1 675 QniaaaeELTAEETERINEEEEKL 698
                 122221111112222222222222 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.15
      AAA_23   23 lItGpNGaGKTTildA 38  
                  +++G  G+GK+T +  
  CCE30959.1 1129 ALVGASGCGKSTTIAL 1144
                  789*********9865 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.016       9.5      20      51 ..     461     492 ..     453     501 .. 0.83
   2 ?    5.7   0.0     0.014       8.1      19      38 ..    1128    1147 ..    1122    1180 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.016
  Zeta_toxin  20 llgGqpGAGKselaellkdelerqgnvvrldp 51 
                  l+G++G+GKs++  l+++  ++ ++ v ld+
  CCE30959.1 461 ALVGASGSGKSTIVGLVERFYDPVQGSVFLDG 492
                 689************99998888777777776 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.014
  Zeta_toxin   19 illgGqpGAGKselaellkd 38  
                  + l+G++G+GKs++++ll++
  CCE30959.1 1128 VALVGASGCGKSTTIALLER 1147
                  6799***********99986 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.019        11       4      16 ..     462     474 ..     460     530 .. 0.88
   2 ?    5.7   0.0     0.025        15       2      18 ..    1128    1144 ..    1128    1193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.019
      AAA_33   4 lvGlpGsGKstla 16 
                 lvG++GsGKst +
  CCE30959.1 462 LVGASGSGKSTIV 474
                 79*********86 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.025
      AAA_33    2 vllvGlpGsGKstlaer 18  
                  v lvG++G+GKst +  
  CCE30959.1 1128 VALVGASGCGKSTTIAL 1144
                  568**********8765 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.061        36      51      74 ..     455     478 ..     419     517 .. 0.72
   2 ?   -0.1   0.0      0.68   4.1e+02      97     133 ..     845     881 ..     841     886 .. 0.89
   3 ?    5.7   0.0     0.012       7.3      52      79 ..    1124    1150 ..    1119    1176 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.061
      DUF815  51 lpannvLLwGarGtGKSslvkall 74 
                  + +   L+Ga G+GKS++v  + 
  CCE30959.1 455 PAGKTTALVGASGSGKSTIVGLVE 478
                 45566779**********996554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.68
      DUF815  97 klvellrerperfilfvDDLsFeeeeeeyksLksvLe 133
                 kl++ +r+r+ r il  D   F+++e+++ +L s+L 
  CCE30959.1 845 KLIRRVRDRAFRAILRQDVAFFDKDENTAGALTSFLS 881
                 79999**********9999999999999999999985 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.012
      DUF815   52 pannvLLwGarGtGKSslvkallneyae 79  
                  p + v L+Ga G+GKS+++ all+++ +
  CCE30959.1 1124 PGQYVALVGASGCGKSTTI-ALLERFYD 1150
                  677899***********99.56666555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.096        57       3      19 ..     458     474 ..     456     491 .. 0.85
   2 ?    8.0   0.0    0.0035       2.1       5      54 ..    1128    1179 ..    1125    1282 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.096
      AAA_24   3 lkiliyGpsgiGKTtla 19 
                 +  +++G sg+GK+t++
  CCE30959.1 458 KTTALVGASGSGKSTIV 474
                 67899**********87 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0035
      AAA_24    5 iliyGpsgiGKTtlakel..gpkplfidtekGlksldadkfpdieswedfld 54  
                  ++++G sg GK+t+++ l   ++plf  ++   k++ + +++d +s +++++
  CCE30959.1 1128 VALVGASGCGKSTTIALLerFYDPLFGGIFVDNKEISGLNINDYRSHIALVS 1179
                  799***********99997778888887777777777777776665554444 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0015      0.92       3      43 ..     458     497 ..     456     508 .. 0.81
   2 ?    0.3   0.0      0.95   5.7e+02       4      24 ..    1127    1147 ..    1124    1150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0015
                 EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTT CS
  APS_kinase   3 vvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRh 43 
                  +  l G sgsGKsti   +e+   +  +  + LdG n+ +
  CCE30959.1 458 KTTALVGASGSGKSTIVGLVER-FYDPVQGSVFLDGKNIET 497
                 567799***********99996.56666777899***9964 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.95
                  EEEEESSTTSSHHHHHHHHHH CS
  APS_kinase    4 vvwltGlsgsGKstianalek 24  
                   v l G sg GKst    le+
  CCE30959.1 1127 YVALVGASGCGKSTTIALLER 1147
                  67899********98777765 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.4   1.4e+03      49      64 ..     461     476 ..     446     483 .. 0.77
   2 ?    9.7   0.0    0.0012      0.73      40      67 ..    1120    1147 ..    1113    1153 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.4
       Rad17  49 LisGPsGCgkstvvkv 64 
                  + G sG gkst+v  
  CCE30959.1 461 ALVGASGSGKSTIVGL 476
                 578*********9865 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0012
       Rad17   40 LesrkkriLLisGPsGCgkstvvkvLsk 67  
                  L  r+ + + + G sGCgkst++  L +
  CCE30959.1 1120 LTVRPGQYVALVGASGCGKSTTIALLER 1147
                  666777888899***********99865 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.27   1.6e+02       3      17 ..     462     476 ..     460     498 .. 0.82
   2 ?   -1.6   0.0       5.9   3.5e+03      44      80 ..     669     706 ..     659     709 .. 0.81
   3 ?    5.4   0.0     0.038        23       2      18 ..    1129    1145 ..    1128    1161 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.27
  RNA_helicase   3 lyGpsgeGKStlake 17 
                   l+G+sg GKSt++  
    CCE30959.1 462 LVGASGSGKSTIVGL 476
                   79*********9865 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 5.9
  RNA_helicase  44 wdgYtgqevvvidDfgqvkdee.npsdlaelirlvsst 80 
                   ++  + q++   +++ + ++e  n+++++ + r+ +++
    CCE30959.1 669 YKLVSAQNIAAAEELTAEETERiNEEEEKLIKRMSNMA 706
                   55566899999999999999999999999999998875 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.038
  RNA_helicase    2 wlyGpsgeGKStlakeL 18  
                     l+G+sg+GKSt++  L
    CCE30959.1 1129 ALVGASGCGKSTTIALL 1145
                    689*********98764 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.3      0.19   1.2e+02       2      16 ..     460     474 ..     459     478 .. 0.90
   2 ?    5.5   0.0      0.03        18       2      19 ..    1128    1145 ..    1127    1177 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.19
                 EEEEESTTSSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLi 16 
                  a+vG + +GKSt++
  CCE30959.1 460 TALVGASGSGKSTIV 474
                 589**********86 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.03
                  EEEEESTTSSHHHHHHHH CS
    MMR_HSR1    2 vaivGrpNvGKStLinal 19  
                  va+vG +  GKSt i  l
  CCE30959.1 1128 VALVGASGCGKSTTIALL 1145
                  89***********99755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1320  (0.0736237); expected 358.6 (0.02)
Passed bias filter:                      727  (0.0405488); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.48
# Mc/sec: 8470.17
//
Query:       CCE30960.1  [L=323]
Description: uncharacterized protein CPUR_04811 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-99  331.6   0.5    8.7e-99  331.3   0.5    1.0  1  SARAF            SOCE-associated regulatory factor of calcium
  ------ inclusion threshold ------
        4.8    7.6   7.7        8.8    6.8   4.6    2.4  2  CYYR1            Cysteine and tyrosine-rich protein 1


Domain annotation for each model (and alignments):
>> SARAF  SOCE-associated regulatory factor of calcium homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.3   0.5  9.7e-103   8.7e-99       4     331 .]      11     323 .]       8     323 .] 0.80

  Alignments for each domain:
  == domain 1  score: 331.3 bits;  conditional E-value: 9.7e-103
       SARAF   4 lllvlataaaaakkkkdkvlLsdvqaLTLrkg.rlTtaRRvspipQLkCvggsagsaaslyevdvvrCtNkGsdydgedvqWeCkadLpeelklGstdV 101
                 ++l+  +++ a+++++ ++lLs+v++LTLr + ++Tt+RRvs+ipQLkC+  s+++ ++ly+v+v+rCtN+Gs+y+ged++W+C+a+LpeelklGst+V
  CCE30960.1  11 AILAPLPLTKASSRPSRAILLSQVETLTLRGHgAKTTHRRVSAIPQLKCT--SSKEICNLYNVEVMRCTNQGSSYGGEDIEWSCSASLPEELKLGSTEV 107
                 4444445666667788**************887*****************..58********************************************* PP

       SARAF 102 iCEGYdspdDpyvLkGSCGveYrLelteegekkykkseeskkeeekkeevkkksssssasllfvvlvllviayivykaflaaeeereaeaeggrrgegg 200
                 iCEGYds+dDpyvLkGSCGveY+L+lt+ g+ +y++ ++ + +  +    + +  ++ a++lf++++++v+++i+ +a+ a++++  ++ +g+r g+gg
  CCE30960.1 108 ICEGYDSADDPYVLKGSCGVEYTLMLTSIGQARYPHIANPRGGYFS----DGQGGTDGAAVLFCIIFVGVLVWILSSACKATRDS-GRRGQGNRGGWGG 201
                 ************************************9999977665....455899999*********************88887.5557899999999 PP

       SARAF 201 gggggggg.......pgseeeq.......ddpPppysltksqkpssssessqqgeqeeswrpGFWtGlatGaaaGYlagrrraqneeteeeekeksssW 285
                 +ggggggg                      dpPppy      kpss s+s      +    pGFW+Gla+Ga aGYlagrrr++ +          ++W
  CCE30960.1 202 WGGGGGGGddggpggF-----GgggwgtgIDPPPPYP---GTKPSSASQS------QPWYYPGFWSGLAGGATAGYLAGRRRNDGRGAY------DGGW 280
                 9999988866555441.....1444567799*****4...3333333221......23457*********************9644444......4566 PP

       SARAF 286 gsssegsssssssssssssassssssssssssstrestGFGgTrRR 331
                 g+s+ ++ s+ s ++ s   + s+ ++ s+sss+restGFG+TrRR
  CCE30960.1 281 GGSN-TWGSEPSYPRPS--PAFSAPARPSTSSSQRESTGFGSTRRR 323
                 5433.233333333322..23344556678899************9 PP

>> CYYR1  Cysteine and tyrosine-rich protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.073   6.6e+02      46      82 ..     151     186 ..     141     195 .. 0.77
   2 ?    6.8   4.6   0.00098       8.8     122     146 ..     227     251 ..     223     253 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.073
       CYYR1  46 yvgdvlsgtaiagivfgvvflmgvvagialcvcmcvk 82 
                 y  d   gt  a ++f ++f+ gv+  i+   c   +
  CCE30960.1 151 YFSDGQGGTDGAAVLFCIIFV-GVLVWILSSACKATR 186
                 556667799999999*99996.888777777776554 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00098
       CYYR1 122 dlpppytptpprsaqysppppypgn 146
                 d pppy  t+p+sa +s p  ypg+
  CCE30960.1 227 DPPPPYPGTKPSSASQSQPWYYPGF 251
                 679********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2515.10
//
Query:       CCE30961.1  [L=693]
Description: related to spindle pole body protein NUF1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-27   95.8  11.1    1.2e-27   95.8  11.1    7.7  6  BRE1      BRE1 E3 ubiquitin ligase
     0.0047   17.1   2.6     0.0047   17.1   2.6    7.5  8  JIP_LZII  JNK-interacting protein  leucine zipper II
  ------ inclusion threshold ------
      0.011   16.3  17.5      0.011   16.3  17.5    6.2  6  APG6_N    Apg6 coiled-coil region
      0.035   14.4   2.2       0.49   10.7   0.1    3.9  4  MLD       Membrane Localization Domain
      0.057   13.4   8.5      0.052   13.5   1.6    3.4  3  VGPC1_C   C-terminal membrane-localisation domain of ion-chan
          1    9.5   3.6          2    8.6   0.9    2.8  2  EFG_II    Elongation Factor G, domain II
        2.4    8.3  60.1       0.14   12.3   1.0    9.5  9  bZIP_1    bZIP transcription factor
        6.3    7.4   9.8       0.94   10.0   3.7    2.6  2  SMP       Seed maturation protein


Domain annotation for each model (and alignments):
>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   6.4       0.2   4.5e+02       7      56 ..     162     211 ..     154     228 .. 0.61
   2 ?   -4.3  12.7         8   1.8e+04       7      89 ..     265     354 ..     262     359 .. 0.61
   3 ?    3.8  12.3     0.027        60       5      95 .]     326     424 ..     322     424 .. 0.83
   4 !   95.8  11.1   5.3e-31   1.2e-27       2      95 .]     465     558 ..     464     558 .. 0.99
   5 ?    2.0  10.0       0.1   2.3e+02      24      81 ..     557     618 ..     557     635 .. 0.82
   6 ?   -1.1   2.9      0.88     2e+03       9      48 ..     619     658 ..     617     661 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.2
        BRE1   7 klekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskda 56 
                  le+  ++l ++ ++   +l +l  +k +l+ + + a   yf a+++ d 
  CCE30961.1 162 ALETKVNKLLAAQKDYMLKLDRLNTEKDQLSEQLNAATLRYFKAEKKLDR 211
                 35555555555555556666666666666666666677777888777764 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 8
        BRE1   7 klekafeelseqlskkvkeltileekklrleaekakadqk.......yfaamrskdalenelkkLnkllsKsselieqLkelekefvrkl 89 
                 ++++  ++++eql++ ++el+ l+++ + l++  +    +       +++ + + ++l + +++L + ++  +e  e+L+   ++++++l
  CCE30961.1 265 EVTASAKKQKEQLDSFLSELKTLQDENSTLKSRRDTWTDEdfirtdvFKQFKAQNEDLIKRINNLEATNKHLREEAEKLQAERTAYKNQL 354
                 578888999999999999999999988888887765444311111112334444455555555555555555555666665666666655 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.027
        BRE1   5 Lvklekafeelseqlskkvkeltileekk........lrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLkelekefvrklkeleke 95 
                 + +le+  + l+e+++k+++e t+ ++++        + lea++   dq    ++ ++d + +e+ + ++++++ + +ie  k+l ++   ++++le +
  CCE30961.1 326 INNLEATNKHLREEAEKLQAERTAYKNQLetdanlvtQELEADIISRDQDLARVRSARDEILAENTQRKASMEQDRTSIELIKDLSTAKDDRIAALESQ 424
                 667778888888888888888777776642222222278*************************************************99999999976 PP

  == domain 4  score: 95.8 bits;  conditional E-value: 5.3e-31
        BRE1   2 qkELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLkelekefvrklkeleke 95 
                 ++EL+++eka+++++++++kkv ++ +leek++ l aek+kadqkyfaa+++ d+++ne++ L++++sKs+e+i+qLk+le++++ +l +lek+
  CCE30961.1 465 NQELPSIEKAYKKMKDLAQKKVLDFVALEEKIALLIAEKSKADQKYFAARKDADTRNNEIRSLRHQNSKSAEIIAQLKDLEAQTRLLLGNLEKQ 558
                 89*******************************************************************************************8 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.1
        BRE1  24 keltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLke....l 81 
                 k++++l++  + l+ e++k +   ++a r  ++l+ +l  L++l++     ++++ e     
  CCE30961.1 557 KQVSDLKQTNSTLTIEIKKMESTSMEAVRRSESLNRQLSELTSLVKARDNASAAMRErhaiQ 618
                 57899***************************************999888888888855541 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 0.88
        BRE1   9 ekafeelseqlskkvkeltileekklrleaekakadqkyf 48 
                 e+++e+l+  ++  +ke +++++k l  ++e ++  +++f
  CCE30961.1 619 EAEMEKLKVRVEHAQKERENWKSKALSNSSEEEEMLREQF 658
                 7889999999999999999999999888888888777777 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   1.6   0.00041      0.91      15      63 ..     161     209 ..     129     221 .. 0.85
   2 ?    1.6   0.3      0.14   3.2e+02      34      54 ..     276     296 ..     253     303 .. 0.59
   3 !   17.1   2.6   2.1e-06    0.0047      27      64 ..     318     355 ..     313     366 .. 0.91
   4 ?   -1.6   0.4       1.4   3.2e+03      24      36 ..     410     422 ..     377     462 .. 0.66
   5 ?    0.9   0.2      0.23   5.2e+02      36      66 ..     448     478 ..     445     484 .. 0.66
   6 ?   -2.5   0.0       2.7     6e+03      48      62 ..     523     537 ..     518     549 .. 0.44
   7 ?    0.2   3.1      0.39   8.8e+02      31      57 ..     555     581 ..     531     596 .. 0.68
   8 ?   -6.1   9.0         8   1.8e+04      33      63 ..     557     587 ..     554     664 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00041
    JIP_LZII  15 teLletknaLnvvkddLIarvdeLtsereiLreEleslqkakerlesri 63 
                 + L +  n+L  +++d + ++d L++e++ L+e l++ +    + e+++
  CCE30961.1 161 AALETKVNKLLAAQKDYMLKLDRLNTEKDQLSEQLNAATLRYFKAEKKL 209
                 55555559999************************99886666666655 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.14
    JIP_LZII  34 rvdeLtsereiLreEleslqk 54 
                 ++d   se ++L++E+++l++
  CCE30961.1 276 QLDSFLSELKTLQDENSTLKS 296
                 344444555555555555444 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 2.1e-06
    JIP_LZII  27 vkddLIarvdeLtsereiLreEleslqkakerlesrik 64 
                 + +dLI+r+ +L   ++ LreE e+lq+++++ +++++
  CCE30961.1 318 QNEDLIKRINNLEATNKHLREEAEKLQAERTAYKNQLE 355
                 678****************************9999875 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.4
    JIP_LZII  24 LnvvkddLIarvd 36 
                 L ++kdd Ia ++
  CCE30961.1 410 LSTAKDDRIAALE 422
                 3344444444444 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.23
    JIP_LZII  36 deLtsereiLreEleslqkakerlesrikel 66 
                 deL + ++ L+ +++s+++++ ++e+  k++
  CCE30961.1 448 DELRQKYKKLQLDFQSINQELPSIEKAYKKM 478
                 7777777888888888777766555544443 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 2.7
    JIP_LZII  48 Eleslqkakerlesr 62 
                 E++sl++++++  + 
  CCE30961.1 523 EIRSLRHQNSKSAEI 537
                 444444444443322 PP

  == domain 7  score: 0.2 bits;  conditional E-value: 0.39
    JIP_LZII  31 LIarvdeLtsereiLreEleslqkake 57 
                 L ++v +L++ +++L+ E++++++++ 
  CCE30961.1 555 LEKQVSDLKQTNSTLTIEIKKMESTSM 581
                 445677777777777777777776655 PP

  == domain 8  score: -6.1 bits;  conditional E-value: 8
    JIP_LZII  33 arvdeLtsereiLreEleslqkakerlesri 63 
                 ++v +L++ +++L+ E++++++++ +   r 
  CCE30961.1 557 KQVSDLKQTNSTLTIEIKKMESTSMEAVRRS 587
                 5677777777777777777776655544444 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.7      0.94   2.1e+03      55      84 ..      53      82 ..      27     102 .. 0.60
   2 ?    9.9  11.1   0.00046         1      16     121 ..     129     211 ..     121     230 .. 0.48
   3 ?   16.3  17.5   4.9e-06     0.011       8     101 ..     257     357 ..     256     384 .. 0.83
   4 ?   -2.8  13.2       3.7   8.3e+03      38     130 ..     389     479 ..     358     482 .. 0.55
   5 ?    6.7  12.2    0.0043       9.7      26     117 ..     508     599 ..     489     613 .. 0.73
   6 ?   -3.4  11.3       5.9   1.3e+04      76     127 ..     607     659 ..     594     682 .. 0.51

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.94
      APG6_N 55 eleklekeeeelleeLkelekereeleael 84
                ++++ +++ +++++ L+el k     ++ l
  CCE30961.1 53 QMQEYSRKAATAESRLEELHKRCVHHDDHL 82
                344445555555555555554444444444 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00046
      APG6_N  16 kqleqaekerda.YeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlell 113
                 ++l++  k +++  e+ l++l +++++ +    e ++le ++ kl +++++ + +L++l +e+++l ++l+a+                      l   
  CCE30961.1 129 SHLQDKGKTIKTkAESLLARLSAQRDSLS---PEAAALETKVNKLLAAQKDYMLKLDRLNTEKDQLSEQLNAA---------------------TLRYF 203
                 33333333222213444555555544443...35555555555555555555555555555555555555555.....................44444 PP

      APG6_N 114 eleeelds 121
                 + e++ld 
  CCE30961.1 204 KAEKKLDR 211
                 44444444 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 4.9e-06
      APG6_N   8 dlLleeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleee.......leklekeeeelleeLkelekereeleaelaaleeelealeeeee 99 
                 d Ll ++++  ++a+k+++++ +fl++lk+ ++e+++ ++ ++   +e       +++ +++ e+l++ +++le++++ l++e ++l++e  a +++ e
  CCE30961.1 257 DELLLKYEEVTASAKKQKEQLDSFLSELKTLQDENSTLKSRRDTWTDEdfirtdvFKQFKAQNEDLIKRINNLEATNKHLREEAEKLQAERTAYKNQLE 355
                 77999999*********************998887764444444444467777889**********************************999998877 PP

      APG6_N 100 rf 101
                   
  CCE30961.1 356 TD 357
                 65 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3.7
      APG6_N  38 ekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqyehaq 130
                 e+++ +++ e+++ + e +++l+ ++++ ++ L+  ++ r +  ++++ l +  ++ e  +++  ++y++lql+ ++ ++el s+e +y+  +
  CCE30961.1 389 ENTQRKASMEQDRTSIELIKDLSTAKDDRIAALES-QTSRLQCVEDVEMLDADDNQ-ELSQDELRQKYKKLQLDFQSINQELPSIEKAYKKMK 479
                 22222212223333444445555555554444443.33333444566666554333.334455668899999999999999999999988765 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.0043
      APG6_N  26 daYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlellelee 117
                 ++Y +  k  +++++e ++ +++  ++ e +++l++ e++    L +lek+ ++l++  ++l+ e +++e    + +r+  +l+++l+el  
  CCE30961.1 508 QKYFAARKDADTRNNEIRSLRHQNSKSAEIIAQLKDLEAQTRLLLGNLEKQVSDLKQTNSTLTIEIKKMESTSMEAVRRSESLNRQLSELTS 599
                 33444444444333333334555556666699999999999999999999999999999999999999999999999999999999999865 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 5.9
      APG6_N  76 ereeleaelaaleeelealeeeeerfwreyne.lqlelleleeeldsleaqye 127
                 + +++++  a +e+e e+l+   e   +e+ + ++  l++  ee ++l  q++
  CCE30961.1 607 ASAAMRERHAIQEAEMEKLKVRVEHAQKERENwKSKALSNSSEEEEMLREQFQ 659
                 33333333344444444444444444444444444444444444444444443 PP

>> MLD  Membrane Localization Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.3   5.1e+03      22      46 ..      83     105 ..      79     106 .. 0.81
   2 ?   10.7   0.1   0.00022      0.49      20      66 ..     461     507 ..     460     511 .. 0.93
   3 ?   -2.5   0.0       2.8   6.4e+03      34      54 ..     538     558 ..     528     568 .. 0.56
   4 ?   -0.3   0.1       0.6   1.3e+03      34      56 ..     573     595 ..     538     607 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.3
         MLD  22 sildkLdeyhellgnmkllkleqve 46 
                  i+d+    ++ll++m+ll+++q++
  CCE30961.1  83 RIIDA--WWRQLLEEMELLAESQIS 105
                 67777..7899999*****999985 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00022
         MLD  20 yqsildkLdeyhellgnmkllkleqvealfeLrkqiehYllehpdsk 66 
                 +qsi ++L +++++ + mk+l++++v   + L ++i  +++e+ +++
  CCE30961.1 461 FQSINQELPSIEKAYKKMKDLAQKKVLDFVALEEKIALLIAEKSKAD 507
                 69************************************999987765 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.8
         MLD  34 lgnmkllkleqvealfeLrkq 54 
                 + ++k+l+++    l +L kq
  CCE30961.1 538 IAQLKDLEAQTRLLLGNLEKQ 558
                 334444444444444444444 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.6
         MLD  34 lgnmkllkleqvealfeLrkqie 56 
                 ++ m++++ e v+ + +L++q  
  CCE30961.1 573 IKKMESTSMEAVRRSESLNRQLS 595
                 45566677777777777777654 PP

>> VGPC1_C  C-terminal membrane-localisation domain of ion-channel, VCN1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.08   1.8e+02      25      36 ..     186     197 ..     178     199 .. 0.86
   2 ?   -2.0   0.1       1.6   3.7e+03      28      44 ..     320     336 ..     315     342 .. 0.71
   3 ?   13.5   1.6   2.3e-05     0.052       1      40 [.     557     596 ..     557     602 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.08
     VGPC1_C  25 sEKeqeierLnk 36 
                  EK+q++e Ln+
  CCE30961.1 186 TEKDQLSEQLNA 197
                 7*********95 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
     VGPC1_C  28 eqeierLnkLlkqhGlL 44 
                 e +i r n+L   + +L
  CCE30961.1 320 EDLIKRINNLEATNKHL 336
                 66777888876666555 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 2.3e-05
     VGPC1_C   1 qqlskLkqaNlqLaaKvqqLefscsEKeqeierLnkLlkq 40 
                 +q+s Lkq N  L   ++++e+   E    +e Ln+ l++
  CCE30961.1 557 KQVSDLKQTNSTLTIEIKKMESTSMEAVRRSESLNRQLSE 596
                 7*********************************997765 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.9   0.00089         2      13      48 ..     272     307 ..     265     309 .. 0.84
   2 ?   -0.6   0.1      0.66   1.5e+03       7      41 ..     626     660 ..     624     666 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00089
      EFG_II  13 kskadedklskaLarlleEDptlrverdeeTketil 48 
                 k+k++ d + + L++l++E  tl+ +rd+ T e  +
  CCE30961.1 272 KQKEQLDSFLSELKTLQDENSTLKSRRDTWTDEDFI 307
                 6688889999999****************9999766 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.66
      EFG_II   7 slaiepkskadedklskaLarlleEDptlrverde 41 
                 ++ +e ++k+ e+  skaL++ +eE+  lr ++ e
  CCE30961.1 626 KVRVEHAQKERENWKSKALSNSSEEEEMLREQFQE 660
                 5778999999999999*********9998877655 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.26   5.8e+02      28      51 ..     128     151 ..     125     158 .. 0.84
   2 ?    4.4   2.7     0.018        40      27      63 ..     159     195 ..     157     196 .. 0.91
   3 ?    6.4   0.4    0.0042       9.4      22      54 ..     271     303 ..     267     305 .. 0.75
   4 ?   12.3   1.0   6.1e-05      0.14      35      62 ..     312     339 ..     309     341 .. 0.91
   5 ?    6.8   1.5    0.0031         7      27      61 ..     446     480 ..     443     483 .. 0.94
   6 ?   -3.0   0.0       3.5   7.9e+03      23      42 ..     484     503 ..     482     509 .. 0.76
   7 ?    0.5   0.1      0.29   6.6e+02      41      61 ..     523     543 ..     513     549 .. 0.71
   8 ?    7.3   0.6    0.0022         5      30      55 ..     554     579 ..     551     583 .. 0.85
   9 ?    1.0   6.3      0.21   4.7e+02      15      56 ..     608     651 ..     592     659 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  28 ieeLerrvkaLekeNksLkselee 51 
                 ++ L+++ k+++++ +sL  +l+ 
  CCE30961.1 128 QSHLQDKGKTIKTKAESLLARLSA 151
                 789*************99999876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  27 eieeLerrvkaLekeNksLkseleelkkevekLkskv 63 
                 e ++Le++v +L +  k++  +l++l+ e ++L +++
  CCE30961.1 159 EAAALETKVNKLLAAQKDYMLKLDRLNTEKDQLSEQL 195
                 5679*************************99998775 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0042
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  22 qRKqaeieeLerrvkaLekeNksLkseleelkk 54 
                 ++ +++ +   ++ k+L+ eN++Lks+ ++ ++
  CCE30961.1 271 KKQKEQLDSFLSELKTLQDENSTLKSRRDTWTD 303
                 455566677788899999999999999887766 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 6.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  35 vkaLekeNksLkseleelkkevekLksk 62 
                 +k+++++N++L++++++l+ +++ L+++
  CCE30961.1 312 FKQFKAQNEDLIKRINNLEATNKHLREE 339
                 799********************99987 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0031
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  27 eieeLerrvkaLekeNksLkseleelkkevekLks 61 
                 +++eL ++ k+L+   +s  +el +++k ++k+k+
  CCE30961.1 446 SQDELRQKYKKLQLDFQSINQELPSIEKAYKKMKD 480
                 689******************************97 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  23 RKqaeieeLerrvkaLekeN 42 
                 +K     +Le++ + L +e 
  CCE30961.1 484 KKVLDFVALEEKIALLIAEK 503
                 66666788999999998775 PP

  == domain 7  score: 0.5 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  41 eNksLkseleelkkevekLks 61 
                 e  sL+ ++++ ++ +++Lk+
  CCE30961.1 523 EIRSLRHQNSKSAEIIAQLKD 543
                 455677777777777777775 PP

  == domain 8  score: 7.3 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  30 eLerrvkaLekeNksLkseleelkke 55 
                 +Le++v+ L++ N++L  e+++++ +
  CCE30961.1 554 NLEKQVSDLKQTNSTLTIEIKKMEST 579
                 79999999999999999999998865 PP

  == domain 9  score: 1.0 bits;  conditional E-value: 0.21
                 HHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHH CS
      bZIP_1  15 eaArrsRqR.KqaeieeLerrvkaLekeNksLksel.eelkkev 56 
                 +aA r R    +ae+e+L+ rv+  +ke ++ ks++ ++ ++e 
  CCE30961.1 608 SAAMRERHAiQEAEMEKLKVRVEHAQKERENWKSKAlSNSSEEE 651
                 55555554324567777777777777777777766414444444 PP

>> SMP  Seed maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.7   0.00042      0.94       7      54 ..     195     243 ..     190     244 .. 0.79
   2 ?   -0.6   0.4      0.88     2e+03      25      36 ..     615     626 ..     608     634 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00042
         SMP   7 LeAaakl..agdkpVtpeDAaavqaAEaraageartapgGvAaaaqaAAd 54 
                 L+Aa++    ++k  ++   a vq  E++a ++++ +p G Aa+a++AA+
  CCE30961.1 195 LNAATLRyfKAEKKLDRTRSAQVQKMEQQAIANST-RPAGAAATAASAAN 243
                 655555434578888888899***********655.9***********96 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.88
         SMP  25 aavqaAEaraag 36 
                  a+q+AE+  + 
  CCE30961.1 615 HAIQEAEMEKLK 626
                 69*****98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2514  (0.14022); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.49u 0.32s 00:00:01.81 Elapsed: 00:00:00.54
# Mc/sec: 3875.83
//
Query:       CCE30962.1  [L=636]
Description: uncharacterized protein CPUR_04813 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-24   85.1   1.7    3.2e-24   84.7   0.1    2.1  2  Myb_DNA-bind_7   Myb DNA-binding like
    4.2e-05   23.7   0.0      9e-05   22.6   0.0    1.6  1  Myb_DNA-binding  Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.018   15.7   4.1      0.018   15.7   4.1    6.2  5  MAGE_N           Melanoma associated antigen family N termina


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.7     1e+04      53      66 ..     359     372 ..     346     391 .. 0.57
   2 !   84.7   0.1   5.3e-28   3.2e-24       7      77 ..     481     553 ..     472     562 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.7
  Myb_DNA-bind_7  53 erknpeliekalkk 66 
                     er++++++++ l+k
      CCE30962.1 359 ERERKARMKAKLEK 372
                     44444444444444 PP

  == domain 2  score: 84.7 bits;  conditional E-value: 5.3e-28
  Myb_DNA-bind_7   7 ktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkkEerknpeliekalkkrke..ldleefke 77 
                      ++ W++ ete+FY++L++fGt+F++i+k+fp+++rr++KlKF++Eer+np++i++a++ +k   +dl+e++ 
      CCE30962.1 481 GPNIWTEPETELFYRGLRMFGTEFEMISKMFPGKQRRHIKLKFNREERHNPARIDAAVMGEKTikMDLDEYQA 553
                     5678*****************************************************8777663467777775 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.5e-08     9e-05       4      43 ..     485     524 ..     482     526 .. 0.96

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.5e-08
                      SBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHH CS
  Myb_DNA-binding   4 WteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwr 43 
                      Wte E el++++++++G  ++ I+++++g+ + +++++++
       CCE30962.1 485 WTEPETELFYRGLRMFGTEFEMISKMFPGKQRRHIKLKFN 524
                      **************************************98 PP

>> MAGE_N  Melanoma associated antigen family N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   2.0      0.53   3.2e+03      57      91 ..      23      57 ..      12      58 .. 0.50
   2 ?  -13.2  18.7         3   1.8e+04      42      89 ..     145     196 ..      23     201 .. 0.74
   3 ?  -13.5  27.4         3   1.8e+04      18      86 ..     208     275 ..     196     318 .. 0.61
   4 ?   15.7   4.1     3e-06     0.018       8      76 ..     358     422 ..     353     432 .. 0.81
   5 ?   -2.3   0.6       1.3   7.6e+03      15      29 ..     577     591 ..     568     606 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.53
      MAGE_N 57 apqspqgapssttaaaavsrtrs..degsesqdeegp 91
                 pq    a ++++++ a++  +s  +++ es+ e++p
  CCE30962.1 23 RPQ-ASTAKPTPAPT-ATPIAQStfEVEKESEIEKEP 57
                333.22233444333.444444422677777777765 PP

  == domain 2  score: -13.2 bits;  conditional E-value: 3
      MAGE_N  42 sedtpesspaagtpsapqspqg..........apssttaaaavsrtrsdegsesqdee 89 
                 se       a+g p+  qs+ +          a  ++t+ + v+ ++s++++e +  e
  CCE30962.1 145 SE------LASGVPARRQSTAEplpqpslidkATTTATTNGDVIPSSSEVSAEHRPTE 196
                 22......22222222222222333335555599999999999999999999977555 PP

  == domain 3  score: -13.5 bits;  conditional E-value: 3
      MAGE_N  18 tqglegaQataaeeeestsss.splsedtpesspaag.tpsapqspqgapssttaaaavsrtrsdegsesq 86 
                 ++ le+ +a aaee +  +ss    +  tp + pa   t +  q    a+s++++ a+++  +  +g +s+
  CCE30962.1 208 APTLEE-EAEAAEESAAAASShVETPAATPVPKPAPTrTRARNQ--TAAASTAAENASTQDGEATQGESSR 275
                 445555.6666666665554422223333333333310333333..3344444444455544445555555 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 3e-06
      MAGE_N   8 rEkrrqaraetqglegaQataaeeeestssssplsedtpesspaagtpsapqspqgapssttaaa.avsr 76 
                 rE+ r+ar +++  ++ + + ++e  s     +  +d ++ spa g ++++ +p +a+s++t+a  a+s+
  CCE30962.1 358 RERERKARMKAKLEKDLEIPGEAEGDS-----SNTNDKTSQSPAPGGTQSTAKPNSAASTSTPAPaATSG 422
                 889999999999999999999999995.....469********998666666699999999988725555 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 1.3
      MAGE_N  15 raetqglegaQataa 29 
                  ae q ++++Qa   
  CCE30962.1 577 EAERQRVVDEQAEIM 591
                 589999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1427  (0.0795917); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.45
# Mc/sec: 4220.44
//
Query:       CCE30963.1  [L=389]
Description: related to RAD23-nucleotide excision repair protein (ubiquitin-like protein) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-25   87.1  15.8    4.6e-25   87.1  15.8    1.7  1  XPC-binding  XPC-binding domain
    8.7e-25   86.2   6.2    1.3e-13   50.5   0.5    2.6  2  UBA          UBA/TS-N domain
    3.7e-20   71.4   1.0    6.8e-20   70.6   1.0    1.4  1  ubiquitin    Ubiquitin family
    7.4e-08   32.1   1.0    1.4e-07   31.3   1.0    1.5  1  Rad60-SLD    Ubiquitin-2 like Rad60 SUMO-like
     0.0015   18.3   0.0        1.8    8.4   0.0    2.4  2  UBA_3        Fungal ubiquitin-associated domain
      0.006   16.9   1.1     0.0092   16.3   0.4    1.6  2  Ubiquitin_5  Ubiquitin-like domain
     0.0069   16.9   0.1      0.021   15.3   0.0    1.8  2  DUF2407      DUF2407 ubiquitin-like domain
  ------ inclusion threshold ------
       0.01   16.4   1.1      0.026   15.1   0.0    2.1  2  MCM_N        MCM N-terminal domain
      0.033   14.3   0.0      0.085   13.0   0.0    1.7  1  Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
       0.14   12.0   0.3        1.9    8.3   0.1    2.2  2  WIYLD        Ubiquitin-binding WIYLD domain
       0.32   11.8   4.0       0.32   11.7   0.5    2.7  2  DUF5327      Family of unknown function (DUF5327)


Domain annotation for each model (and alignments):
>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1  15.8   2.8e-28   4.6e-25       1      56 [.     266     321 ..     266     322 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 2.8e-28
  XPC-binding   1 LefLrnnpqFqqlRqlvqqnPqlLqplLqqlaqsnPqllqlIqqnqeeFlqlLnep 56 
                  LefLrnnpqFqqlRq+vqq+Pq+L+p+Lqql++ nPql+q+I++n+++FlqlL+e+
   CCE30963.1 266 LEFLRNNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQMIASNPDQFLQLLGES 321
                  89***************************************************996 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.8     6e-13   9.7e-10       3      37 .]     149     183 ..     147     183 .. 0.96
   2 !   50.5   0.5     8e-17   1.3e-13       2      37 .]     341     376 ..     340     376 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 6e-13
                 HHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   3 eeaiqrLveMGFdreevveALratgnNeErAveyL 37 
                  eai+++ +MGF+r++++ A ra++ N++rAveyL
  CCE30963.1 149 TEAIANMEAMGFERSQIEAAMRAAFHNPDRAVEYL 183
                 699*******************************9 PP

  == domain 2  score: 50.5 bits;  conditional E-value: 8e-17
                 CHHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   2 deeaiqrLveMGFdreevveALratgnNeErAveyL 37 
                 + +ai+rL+ +GFdr+++++A++a+++NeE+A+++L
  CCE30963.1 341 ERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFL 376
                 6799*******************************9 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   1.0   4.2e-23   6.8e-20       2      71 ..       4      73 ..       2      74 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 4.2e-23
                EEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESS CS
   ubiquitin  2 tvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrl 71
                t++ l+++k+ leve++d ++++K+ki e++g  + +q+LiysGk+L+d++t+e+y+i+++ ++++++++
  CCE30963.1  4 TFRDLKQQKFVLEVEPTDLISTVKQKITEEKGWDRTHQKLIYSGKILKDDETVESYKIEEKGFVVCMVNK 73
                566699*************************************************************986 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   1.0   8.3e-11   1.4e-07       1      65 [.       1      64 [.       1      71 [. 0.94

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 8.3e-11
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TT CS
   Rad60-SLD  1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedg 65
                +k++ ++ +++++ ++V+pt  +s+++++  ++kg ++ + ++Li+ G+ L++++tve+++ie++
  CCE30963.1  1 MKVTFRDLKQQKFVLEVEPTDLISTVKQKITEEKGWDR-THQKLIYSGKILKDDETVESYKIEEK 64
                68889999999***************************.************************97 PP

>> UBA_3  Fungal ubiquitin-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0011       1.8      11      31 ..     150     170 ..     143     171 .. 0.87
   2 !    7.3   0.0    0.0026       4.2      10      29 ..     342     361 ..     340     363 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
                 HHHHHHHHHT--HHHHHHHHH CS
       UBA_3  11 dlVdefvsqGFekdkvievLk 31 
                 +++ +++++GFe+ ++ ++++
  CCE30963.1 150 EAIANMEAMGFERSQIEAAMR 170
                 8999***********988876 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0026
                 HHHHHHHHHHT--HHHHHHH CS
       UBA_3  10 rdlVdefvsqGFekdkviev 29 
                 rd+++ +   GF++d+ i++
  CCE30963.1 342 RDAIERLCRLGFDRDQAIQA 361
                 9****************998 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.4   5.7e-06    0.0092      32      88 ..      11      67 ..       3      77 .. 0.79
   2 ?   -3.5   0.0       8.7   1.4e+04      28      38 ..     281     291 ..     264     310 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.7e-06
  Ubiquitin_5 32 kkklletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv 88
                 +k +le++ +   + + +ki+ee g  +++ Kli++gk+l+ d+t e   ++++  v
   CCE30963.1 11 QKFVLEVEPTDLISTVKQKITEEKGWDRTHQKLIYSGKILKDDETVESYKIEEKGFV 67
                 5666776666667778899****************************9988776554 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.7
  Ubiquitin_5  28 tkeekkkllet 38 
                   +++++++le 
   CCE30963.1 281 VVQQQPQMLEP 291
                  33455566654 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.3e-05     0.021      29      88 ..      22      83 ..      10      92 .. 0.77
   2 ?   -2.8   0.1       5.7   9.2e+03      73      81 ..     193     201 ..     178     217 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
     DUF2407 29 LkqliRerl..paelasrrLrLIyaGrlLedttslasslklpeesvsdkaekskekgkapvr 88
                L  ++++++  ++  ++ + +LIy+G++L+d ++++s   +++  v  +++k+kek  ap+ 
  CCE30963.1 22 LISTVKQKIteEKGWDRTHQKLIYSGKILKDDETVESYKIEEKGFVVCMVNKPKEKPAAPAA 83
                44455555522236788889***************999888888888888888888888876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.7
     DUF2407  73 sdkaekske 81 
                 ++++++++ 
  CCE30963.1 193 QQQQQQQQA 201
                 221222222 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.3       1.7   2.8e+03      59      87 ..     174     206 ..     167     223 .. 0.66
   2 ?   15.1   0.0   1.6e-05     0.026      26      77 ..     276     327 ..     266     355 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.7
       MCM_N  59 enpkeylplleealkevvkklepsykdd....a 87 
                 +np + +++l  ++ e +++ +++++++    +
  CCE30963.1 174 HNPDRAVEYLLTGIPENIQQQQQQQQQArqaaP 206
                 688888999988888888777776555544331 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.6e-05
       MCM_N  26 dqlqemaerekttLevdlddLaafdeeLaeailenpkeylplleealkevvk 77 
                 +ql+++ +++ + Le  l+ L a +++La+ i +np ++l+ll e +++ v+
  CCE30963.1 276 QQLRQVVQQQPQMLEPILQQLGAGNPQLAQMIASNPDQFLQLLGESADDDVP 327
                 79******************************************99998775 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.2e-05     0.085      48      72 ..      38      62 ..       7      92 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
                 CCCEEEEETTEEE-TTSBCCCCS-T CS
  Rad60-SLD_2 48 vndlklilaGkiLennktlkelrlp 72
                   + kli++GkiL++  t++++++ 
   CCE30963.1 38 RTHQKLIYSGKILKDDETVESYKIE 62
                 34469****************9865 PP

>> WIYLD  Ubiquitin-binding WIYLD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0012       1.9      10      28 ..     150     168 ..     144     171 .. 0.86
   2 ?    1.2   0.0       0.2   3.2e+02       8      24 ..     341     357 ..     336     361 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0012
       WIYLD  10 aAidamkelGfskeqvrpv 28 
                  Ai  m+++Gf+++q+++ 
  CCE30963.1 150 EAIANMEAMGFERSQIEAA 168
                 69**************876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.2
       WIYLD   8 idaAidamkelGfskeq 24 
                  + Ai+++ +lGf+++q
  CCE30963.1 341 ERDAIERLCRLGFDRDQ 357
                 578**********9987 PP

>> DUF5327  Family of unknown function (DUF5327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2       1.1   1.8e+03      62      69 ..      90      97 ..      48     136 .. 0.56
   2 ?   11.7   0.5    0.0002      0.32      56      98 ..     189     231 ..     166     232 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.1
     DUF5327 62 epvqaqvr 69
                 p +++++
  CCE30963.1 90 PPATPAQP 97
                22222222 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.0002
     DUF5327  56 kplseqepvqaqvrqaekeqteevkkekkleeeddangdSLfD 98 
                 +++++q+++q+q rqa  ++ ++++ ++ ++e++d  g +LfD
  CCE30963.1 189 ENIQQQQQQQQQARQAAPAAAPAQTAPEATQEDEDDGGVNLFD 231
                 44555555555555555557777788888888899999****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1383  (0.0771376); expected 358.6 (0.02)
Passed bias filter:                      738  (0.0411624); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 2791.71
//
Query:       CCE30964.1  [L=485]
Description: uncharacterized protein CPUR_04815 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-05   22.2   0.4    0.00012   21.4   0.4    1.3  1  Zip       ZIP Zinc transporter
  ------ inclusion threshold ------
        1.4    8.6   9.5       0.96    9.1   8.1    1.4  1  DUF1345   Protein of unknown function (DUF1345)


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.4   1.3e-08   0.00012      20     147 ..      54     200 ..      36     217 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.3e-08
         Zip  20 lgpllvpkiskl...........lsklllslllafavGvllgtaflhLlPealealeesqleeehth.plagllvllGflllllveklltmivek.... 102
                 ++++ +  i+ +             +++++ll ++a+  ++  a++   +  +e+++++      +  +l+gl++ l+f +++ + ++++++v+     
  CCE30964.1  54 VMLAALGSIKAVkhnipywwsesNMSFVVQLLMCMAAAAISIAALVVTRQSTTEQHDDTLVAF--RRnILVGLAMALSFAAVFQIAFVTSYFVAFrhva 150
                 33333333333334455566667999******************9999999999999976443..446***************************7888 PP

         Zip 103 .....ksshkektpkkasssssesaakksvsndkveeseekedhvaeadt 147
                       ss + +++++ +++ +  ++++++++ +v+e++ ++++++ ++t
  CCE30964.1 151 dgsssPSSPSCPSHDHRKKHVKGIRYSQTMPMLTVPETTSGKKNQSTVAT 200
                 77555555555555555556666677777777777777777665555444 PP

>> DUF1345  Protein of unknown function (DUF1345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   8.1   0.00011      0.96       7     103 ..      44     143 ..      35     180 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00011
     DUF1345   7 igwdlaalvylvlvllvllradaeelrkraeredesrvlilllvllaalaslvaivlllasakaekpae..kllhlalavatvvlsWllv.htvfalhY 102
                 ++  + a+ +++l++l   +a ++++  + ++ + s v++ll++++aa++s++a+v++ +s+ ++++++  ++ + +l  ++++ls ++v +++f   Y
  CCE30964.1  44 AAATVEAAALVMLAALGSIKAVKHNIPYWWSESNMSFVVQLLMCMAAAAISIAALVVTRQSTTEQHDDTlvAFRRNILVGLAMALSFAAVfQIAFVTSY 142
                 444555566666666666777889999999999999999999****************99988888887556677888888888888754366666666 PP

     DUF1345 103 a 103
                  
  CCE30964.1 143 F 143
                 4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3620.60
//
Query:       CCE30965.1  [L=620]
Description: related to deoxyribodipyrimidine photo-lyase PHR [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-75  253.5   0.5    1.6e-75  253.0   0.5    1.2  1  FAD_binding_7   FAD binding domain of DNA photolyase
    2.9e-38  131.5   0.0      7e-38  130.2   0.0    1.6  2  DNA_photolyase  DNA photolyase


Domain annotation for each model (and alignments):
>> FAD_binding_7  FAD binding domain of DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.0   0.5   1.8e-79   1.6e-75       3     201 ..     317     545 ..     315     546 .. 0.94

  Alignments for each domain:
  == domain 1  score: 253.0 bits;  conditional E-value: 1.8e-79
                    HHHHHHHHHHHHHHCS.TTTTTSSTTGCCTT.------HH.H....................HHHHHTT-SS-HHHHHHHHHHHHHS---HHHHHH CS
  FAD_binding_7   3 reLlwrefyyallaae.pelaeralkekfdr.ipweeseeek....................leaWkeGrTGfPlvDAamrqLretGwmhnrlRmi 76 
                    ++L++r++y+a++aa  p++ +++  ++++r ipw+  ++++                    ++++k+G TGfP++DA+mrqLr+ Gw+h+++R++
     CCE30965.1 317 GQLIFRDMYFAAQAAIgPHF-HQTAGNQHCRfIPWHLPSKTDpatglatgdyhvdsqqadewFRRYKQGVTGFPWIDALMRQLRHDGWIHHLGRHS 411
                    79**************8888.89999999999***996665356789999********************************************** PP

                    HHHHHCT.TT-B-HHHHHHHHHHH-TT--CCHHHHHHHHHCT-STTS-STT----CCCCHHHCSTT-HHHHHH-GGGTTS-HHHHT-GGGSGCHHH CS
  FAD_binding_7  77 vasFltk.dLlidWregeevFeellvDadlasnagnwqwlagtgadaapafrifnpvkqgkkfDpegeyirrwvpeLkklpakyihepwkapaeeq 171
                    va+Flt+  ++idW++g+evFeell+D+++a+nagnwqwl++t   ++ +fr+++pv++g+k+D++g+ ir+wvpeL++l+akyi+epwkap  +q
     CCE30965.1 412 VACFLTRgGCYIDWERGAEVFEELLLDHEPACNAGNWQWLSCTAFFSQ-YFRCYSPVAFGQKWDKNGDLIRKWVPELRNLHAKYIYEPWKAPLLDQ 506
                    ******************************************888777.9********************************************** PP

                    HHHT--TTTS.........S---SS-HHHHHHHHHHHHH CS
  FAD_binding_7 172 kkagvvlgkd.........Ypkpivdhkearkraleayk 201
                    +kagv+++ d         Ypkp++d++e+r+ +++a+k
     CCE30965.1 507 NKAGVRIKGDgltdvqdgtYPKPMFDFDERRNVCIAAMK 545
                    **88888888888888888******************98 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.2   0.0   7.9e-42     7e-38       1     157 [.       6     166 ..       6     177 .. 0.90
   2 ?   -3.7   0.0       1.2   1.1e+04     119     134 ..     486     501 ..     475     508 .. 0.76

  Alignments for each domain:
  == domain 1  score: 130.2 bits;  conditional E-value: 7.9e-42
                     EEEEESS---STT-HHHHHHHCTT.SEEEEEEEE-HHHHTCGS-CHHHHHHHHHHHHHHHHHHHHTT..--EEEEESSHHHHHHHHHHHCTECEE CS
  DNA_photolyase   1 vlvWfrrDlRlhDNpALaaAaasg.epvipvfvldpekahklrvgaarvdfllesLadLdeeLrelg..irLvvrrgdpadvlpelakelgasav 92 
                     v++Wfr+DlRlhD pAL aA++ + + ++p+f++dp++ +  r g +r++fll + +dL e++ +l+  ++L+v+r  p++ lp+l+k ++++++
      CCE30965.1   6 VIYWFRTDLRLHDSPALKAALDLQpAVLWPIFTWDPHYVYRARGGVNRWQFLLDCQNDLSESITKLNpkSKLFVLREGPQTLLPKLFKAWKVTHL 100
                     79******************988635599********7777789*************************************************** PP

                     EEE---SHHHHHHHHHHHHHHHHCTSEEEEE--SSSS-HHHHHTTTS.SSHSSHHHHHHCHHHHHC CS
  DNA_photolyase  93 vanreyepdererdeavkealrkagievesfddhtlvepgevktkkg.kpykvFtpfrkrwlkelk 157
                     v+++++++++rerdeav++a+++ag+ev   +++tl++ ++v  k+g kp +  t    + +k  +
      CCE30965.1 101 VFEKDTDSYARERDEAVAKAAKEAGVEVVVRSGRTLWDSDQVVAKHGgKPTMSMTALLSATKKLGD 166
                     ******************************************776666***999998886666444 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.2
                     EEEEE--SSSS-HHHH CS
  DNA_photolyase 119 evesfddhtlvepgev 134
                     e++  ++++++ep+++
      CCE30965.1 486 ELRNLHAKYIYEPWKA 501
                     4667788888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4222.64
//
Query:       CCE30966.1  [L=352]
Description: uncharacterized protein CPUR_04817 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-05   24.9   0.4     0.0015   18.6   0.1    2.9  2  TPR_8     Tetratricopeptide repeat
    0.00014   22.3   2.5     0.0019   18.7   0.5    2.6  3  TPR_19    Tetratricopeptide repeat
    0.00028   20.7   3.4       0.26   11.2   0.3    2.7  2  TPR_10    Tetratricopeptide repeat
     0.0005   20.3   3.0     0.0081   16.4   1.9    2.6  2  TPR_12    Tetratricopeptide repeat
     0.0016   18.4   5.7      0.022   14.8   0.2    3.3  3  TPR_2     Tetratricopeptide repeat
     0.0076   16.0   4.9      0.046   13.6   0.1    3.2  3  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.043   13.9   2.1         20    5.5   0.0    3.5  3  TPR_7     Tetratricopeptide repeat
      0.092   13.4   5.2        1.7    9.5   0.1    3.5  3  TPR_6     Tetratricopeptide repeat
      0.098   13.5   4.4        2.9    8.9   0.2    3.9  4  TPR_14    Tetratricopeptide repeat
      0.098   12.4   0.0       0.26   11.0   0.0    1.7  1  TPR_11    TPR repeat


Domain annotation for each model (and alignments):
>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   8.3e-07    0.0015       2      30 ..     209     237 ..     208     237 .. 0.90
   2 ?    3.4   0.0      0.06   1.1e+02       6      27 ..     250     271 ..     249     274 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 8.3e-07
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekalel 30 
                 +a+   g++++++++ye+Ak ++e+ale+
  CCE30966.1 209 DAMAVEGHLLHQQKRYEAAKTVLERALEI 237
                 667777*********************97 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.06
                 HHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyeka 27 
                 +lg +y  l++ + A   +ek 
  CCE30966.1 250 RLGTTYAALNRDNDARRILEKL 271
                 79******************97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.6     1e+04       5      23 ..      74      89 ..      68     104 .. 0.59
   2 !   11.2   0.1   0.00023      0.42      13      54 ..     197     237 ..     192     245 .. 0.82
   3 !   18.7   0.5     1e-06    0.0019       2      54 ..     219     274 ..     218     280 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.6
      TPR_19  5 gdyaeAlalleqalqedpk 23
                + +++A++++ +   +dp+
  CCE30966.1 74 NAFDRAIDYYHY---DDPH 89
                456677776665...3555 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00023
      TPR_19  13 lleqalqedpknaearllLAeallalgqldeAealLdalpee 54 
                 ++++ l ++ ++a+a +    +l +++++++A+ +L++++e 
  CCE30966.1 197 RFKR-LVASGNDADAMAVEGHLLHQQKRYEAAKTVLERALEI 237
                 5666.345889999999999******************9986 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 1e-06
      TPR_19   2 laegdyaeAlalleqalqedpk...naearllLAeallalgqldeAealLdalpee 54 
                  ++++y++A   le+al+   +     +  l+L   + al++ ++A+++L++l ++
  CCE30966.1 219 HQQKRYEAAKTVLERALEIGGHptwRNYCELRLGTTYAALNRDNDARRILEKLADM 274
                 689****************77766766666688*******************9876 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.3   0.00014      0.26       9      31 ..     215     237 ..     208     238 .. 0.93
   2 !    9.6   0.2   0.00048      0.86       8      27 ..     251     270 ..     249     274 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
      TPR_10   9 analrqrgrydeAealleealai 31 
                 +++l+q++ry++A   le+al+i
  CCE30966.1 215 GHLLHQQKRYEAAKTVLERALEI 237
                 789******************97 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00048
      TPR_10   8 LanalrqrgrydeAeallee 27 
                 L+ ++ +++r ++A+++le+
  CCE30966.1 251 LGTTYAALNRDNDARRILEK 270
                 9*****************98 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.5   2.7e-05     0.049      44      74 ..     207     237 ..     192     239 .. 0.83
   2 !   16.4   1.9   4.5e-06    0.0081      10      72 ..     215     272 ..     215     275 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-05
      TPR_12  44 tattlrnLgrlyralgryeeAlelleealai 74 
                  a ++   g l+++++rye+A   le+al+i
  CCE30966.1 207 DADAMAVEGHLLHQQKRYEAAKTVLERALEI 237
                 6788888999999999999999999999987 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 4.5e-06
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 +++l++++ry+ A + le+alei      p++ +   +   Lg++y al+r  +A+++le+  
  CCE30966.1 215 GHLLHQQKRYEAAKTVLERALEIG---GHPTWRN--YCELRLGTTYAALNRDNDARRILEKLA 272
                 6899********************...5566655..5999*******************9865 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       1.1     2e+03      16      24 ..      75      83 ..      73      85 .. 0.71
   2 !   14.8   0.2   1.2e-05     0.022       2      30 ..     209     237 ..     208     239 .. 0.90
   3 ?    4.6   0.1     0.023        42       6      27 ..     250     271 ..     247     274 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
       TPR_2 16 dyeeAleaf 24
                 +++A++++
  CCE30966.1 75 AFDRAIDYY 83
                478888888 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.2e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAlel 30 
                 +a    G ++ ++++ye A+  +e+Ale+
  CCE30966.1 209 DAMAVEGHLLHQQKRYEAAKTVLERALEI 237
                 56677899*******************97 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.023
       TPR_2   6 nlGlayyklgdyeeAleafekA 27 
                 +lG  y++l++ ++A++ +ek 
  CCE30966.1 250 RLGTTYAALNRDNDARRILEKL 271
                 79***************99997 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2     0.097   1.7e+02      14      24 ..      73      83 ..      73      84 .. 0.85
   2 !   13.6   0.1   2.5e-05     0.046       7      30 ..     214     237 ..     208     238 .. 0.89
   3 ?    0.5   0.1      0.35   6.3e+02       5      20 ..     249     264 ..     246     270 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.097
                TT-HHHHHHHH CS
       TPR_1 14 lgkydeAleyy 24
                ++ +d A++yy
  CCE30966.1 73 QNAFDRAIDYY 83
                5779******9 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.5e-05
                 HHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekALel 30 
                  G++++++++y+ A    e+ALe+
  CCE30966.1 214 EGHLLHQQKRYEAAKTVLERALEI 237
                 59********************98 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.35
                 HHHHHHHHHTT-HHHH CS
       TPR_1   5 ynlGnayfklgkydeA 20 
                  +lG +y  l++ ++A
  CCE30966.1 249 LRLGTTYAALNRDNDA 264
                 58********998877 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2      0.33     6e+02      13      22 ..      74      83 ..      73      85 .. 0.84
   2 ?    5.5   0.0     0.011        20       6      28 ..     215     237 ..     215     241 .. 0.88
   3 ?    4.5   0.0     0.023        41       3      25 ..     249     271 ..     247     281 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.33
       TPR_7 13 GdyeeAiely 22
                + +++Ai++y
  CCE30966.1 74 NAFDRAIDYY 83
                669******9 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.011
       TPR_7   6 arlysrlGdyeeAielyeqsLal 28 
                 ++l +++ +ye A +++e++L++
  CCE30966.1 215 GHLLHQQKRYEAAKTVLERALEI 237
                 67889999***********8875 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.023
       TPR_7   3 lnLarlysrlGdyeeAielyeqs 25 
                 l+L+ +y +l++  +A +++e++
  CCE30966.1 249 LRLGTTYAALNRDNDARRILEKL 271
                 68*******************94 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       5.1   9.1e+03      16      23 ..      76      83 ..      73      84 .. 0.59
   2 ?    4.6   0.3     0.033        59      10      28 ..     218     236 ..     191     237 .. 0.87
   3 ?    9.5   0.1   0.00094       1.7       3      27 ..     248     272 ..     246     273 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.1
                HHHHHHHH CS
       TPR_6 16 tdkAleal 23
                 d+A++++
  CCE30966.1 76 FDRAIDYY 83
                46666665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.033
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealerlik 28 
                 + +++++++A++ ler ++
  CCE30966.1 218 LHQQKRYEAAKTVLERALE 236
                 45578***********986 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00094
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerli 27 
                  ++l+  y +l++  +A+++le+l 
  CCE30966.1 248 ELRLGTTYAALNRDNDARRILEKLA 272
                 69********99999********96 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       7.6   1.4e+04      16      24 ..      75      83 ..      73      84 .. 0.78
   2 ?   -1.7   0.0       4.3   7.8e+03       8      22 ..     198     212 ..     195     214 .. 0.77
   3 ?    8.9   0.2    0.0016       2.9       8      32 ..     215     239 ..     208     248 .. 0.84
   4 ?    3.7   0.2     0.079   1.4e+02       5      29 ..     249     273 ..     245     289 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.6
      TPR_14 16 dpdeAiall 24
                 +d+Ai+++
  CCE30966.1 75 AFDRAIDYY 83
                589999998 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.3
      TPR_14   8 aeallalGdpdeAia 22 
                  + l a+G+ ++A+a
  CCE30966.1 198 FKRLVASGNDADAMA 212
                 556889999999987 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0016
      TPR_14   8 aeallalGdpdeAiallrralalaP 32 
                 +++l ++ ++++A ++l+ral+ + 
  CCE30966.1 215 GHLLHQQKRYEAAKTVLERALEIGG 239
                 5788999**************9864 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.079
      TPR_14   5 lalaeallalGdpdeAiallrrala 29 
                 l+l+  ++al +  +A+++l+++ +
  CCE30966.1 249 LRLGTTYAALNRDNDARRILEKLAD 273
                 78999****************9866 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00014      0.26       1      23 [.     215     237 ..     215     237 .. 0.96

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkl 23 
                 G+++++q +ye+A +++++Al++
  CCE30966.1 215 GHLLHQQKRYEAAKTVLERALEI 237
                 899******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2779.99
//
Query:       CCE30967.1  [L=294]
Description: uncharacterized protein CPUR_04818 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-14   54.0   0.4    2.1e-14   54.0   0.4    3.7  3  U3_snoRNA_assoc  U3 snoRNA associated
  ------ inclusion threshold ------
          6    7.0  26.2        2.5    8.2   6.3    2.6  3  YqfQ             YqfQ-like protein


Domain annotation for each model (and alignments):
>> U3_snoRNA_assoc  U3 snoRNA associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   2.3     0.021   1.9e+02      12      39 ..      18      50 ..      10      88 .. 0.59
   2 ?   -0.1   7.9      0.18   1.6e+03      15      51 ..     111     150 ..      91     188 .. 0.62
   3 !   54.0   0.4   2.3e-18   2.1e-14       2      90 .]     195     279 ..     194     279 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.021
  U3_snoRNA_assoc 12 e..redeeeaeeekskhin...eepkkarkkkk 39
                     +  +e++++a ++k+++ n   + +k+++k+++
       CCE30967.1 18 QavEESSPSARADKRSKPNarnSPAKRQKKSPQ 50
                     244555555555555555553233333333332 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.18
  U3_snoRNA_assoc  15 deeeaeeekskhin...eepkkarkkkkkekllelkekrp 51 
                      de ++  ++s+  +   + +++ +k +k++  ++++++++
       CCE30967.1 111 DEAPEAVSTSRVAKeimKSAQELKKLAKEQAAASKEKRQQ 150
                      2222222222222244444444444444444444433333 PP

  == domain 3  score: 54.0 bits;  conditional E-value: 2.3e-18
  U3_snoRNA_assoc   2 LPdeilealeeredeeeaeeekskhineepkkarkkkkkekllelkekrpkdvkkGpvsvrVlkssnssklaPkaekkirnskekwLkR 90 
                      LP+e+le++++   +++ ++++s+ ++   ++ar  +  e++l++++ +p+d  +G++++rV k+   +++aPk++k++ ++k+++L+R
       CCE30967.1 195 LPAEFLEDSSS---DSDGDASHSSDVDAPRRRARTVPSVERRLARQAEGPRDEVIGTTVYRVSKDVD-ARMAPKVKKSAQSAKDALLRR 279
                      9*****88888...3333344455666899999*******************************665.5******************98 PP

>> YqfQ  YqfQ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.3   0.00028       2.5     116     168 ..      18      72 ..       5      84 .. 0.81
   2 ?    6.0   9.9    0.0013        12     106     168 ..     103     173 ..      89     181 .. 0.75
   3 ?   -1.7   0.1      0.32   2.9e+03     106     157 ..     186     236 ..     171     250 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00028
        YqfQ 116 eseevevs..eteeseknkkkkpkakkkkkkkkkkdvkeeeiekeapkekkvqsk 168
                 +++e++++  ++++  k + ++++ak++kk+ ++ +  ee+i+ ++++e+k++++
  CCE30967.1  18 QAVEESSPsaRADKRSKPNARNSPAKRQKKSPQRSEEVEEVIAVSTQDENKAPET 72 
                 334444443377777888889999999***********************99987 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0013
        YqfQ 106 sedeeteevteseevevs........eteeseknkkkkpkakkkkkkkkkkdvkeeeiekeapkekkvqsk 168
                  + +e++  +++e v++s         ++e +k  k+++ a+k+k++++++ +k++ +e++a  ++  +s 
  CCE30967.1 103 GDSDESDSDEAPEAVSTSrvakeimkSAQELKKLAKEQAAASKEKRQQRDALFKKQALERKAAAHADEKSA 173
                 45556666677777777777999997777888999999******************999988776533333 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.32
        YqfQ 106 sedeeteevteseevevseteeseknkkkkpkakkkkkkkkkkdvkeeeiek 157
                 +e ++  +v  +e  e s + +s+++  +++  +   ++ ++ ++ e  +++
  CCE30967.1 186 AERTQIPNVLPAEFLEDS-SSDSDGDASHSSDVDAPRRRARTVPSVERRLAR 236
                 455555555555544444.344555555555555555666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2090  (0.116571); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 1975.79
//
Query:       CCE30968.1  [L=1061]
Description: uncharacterized protein CPUR_04819 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-30  104.7   0.0    7.6e-30  103.7   0.0    1.5  1  PH_10         Pleckstrin homology domain
    5.8e-14   52.7   0.0    9.8e-14   52.0   0.0    1.4  1  VWA           von Willebrand factor type A domain
      4e-10   39.8   0.2    2.4e-09   37.3   0.2    2.4  1  VWA_3         von Willebrand factor type A domain
     0.0029   17.9   4.7     0.0052   17.1   4.7    1.5  1  zf-RING_2     Ring finger domain
     0.0036   17.2   4.4     0.0063   16.5   4.4    1.4  1  zf-RING_5     zinc-RING finger domain
     0.0094   15.6   3.0     0.0094   15.6   3.0    1.7  2  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
  ------ inclusion threshold ------
      0.021   15.1   3.9      0.038   14.3   3.9    1.5  1  zf-RING-like  RING-like domain
      0.036   13.9   4.5      0.069   13.0   4.5    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
      0.064   13.1   4.0       0.13   12.2   4.0    1.5  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
      0.088   13.1   2.3        0.2   12.0   2.3    1.6  1  zf-rbx1       RING-H2 zinc finger domain
       0.42   10.7   2.9       0.95    9.6   2.9    1.5  1  DUF1272       Protein of unknown function (DUF1272)
        2.3    8.4   5.2        5.3    7.2   5.2    1.7  1  zf-C3H2C3     Zinc-finger
        4.7    7.0   6.7        2.1    8.2   4.1    1.9  2  zf-RING_11    RING-like zinc finger
        6.2    6.8   5.2         16    5.5   1.0    2.6  2  Prok-RING_1   Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> PH_10  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   0.0   5.9e-33   7.6e-30       2     123 .]     308     421 ..     307     421 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 5.9e-33
       PH_10   2 kfGeLllhdtltVkkdsdsereyevyLFekillcvkevkeekkkksksssllkkkssssskkkktklqLKGrilis.nvtevtssskpgsyslqiswkg 99 
                 +fG L+lh+tl+V+kd+ s++e+e+yLF+++l+cvke     kk s   ++++++++ s++ k t+++LKG+ili+ +++ev ++ + ++++l++s++ 
  CCE30968.1 308 RFGPLRLHGTLRVGKDKVSWQELECYLFAEMLICVKE-----KKPS---QTSSQWEEGSAAPKPTRCTLKGSILIRkHLNEVLETGSIDENVLTLSLS- 397
                 7************************************.....5555...3444667777789************************************. PP

       PH_10 100 dke.lesftlrfkneeqlkkWesal 123
                  ++ l++f+lrf+n++qlk W++al
  CCE30968.1 398 -VAeLPHFHLRFDNRNQLKLWNQAL 421
                 .555******************986 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   7.7e-17   9.8e-14       1     169 [.     495     660 ..     495     665 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 7.7e-17
                 EEEEEEE-STTSCHHHHHHHHHHHHHHHHHHTBTTTTEEEEEEEESSS..EEEEEETTSHC..HHHHHHHHHHTGSGGGGSSC-HHHHHHHHHHHHHHH CS
         VWA   1 DivfvlDgSgsmgeenfekvkefikklveklevgpegtrvglvqfsse..vktefslndys..skeellsalnnlkysgggttntgkalkyaleklfks 95 
                 D+v+v+  S+sm++ +++ v++++  +v+ l    +++r+glv+f+s     +++ ++++     + +ls+++ + +++   + + ++ + a++ l+++
  CCE30968.1 495 DVVVVVPISSSMQGVKINLVRDALRFMVNTLG---DRDRMGLVTFGSGggGVPIVGMTTKAwpGWANVLSSIKPVGQKSYRAD-VVEGANVAMDLLMQR 589
                 9*******************************...***********9888555556666555699*********999888888.*************** PP

                 HGTSSTTSEEEEEEEESS--CS.SHTHHHHHHHHGCTEEEEEEEESSSHHHHHHHHHSSSSCHHCEEEESSHHHH CS
         VWA  96 sagaRenakkviilltdGksnd.gdpkeaaneakeqgikvfavGvgnadekelLnkiasepgeghvftvtdfeel 169
                 +++   n    i+l++d  + d ++++ ++ +a +++i+++++G g  ++ + + +++++++   + +v+d+  l
  CCE30968.1 590 KHN---NPIATIMLISDASTADaDSVDFVVSRAEAAKITIHSFGLGMTHKPDTMIELSTKTK-APYTYVKDWMML 660
                 ***...99*********9999967*********************************99999.999999999865 PP

>> VWA_3  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.2   1.9e-12   2.4e-09       2     148 ..     495     646 ..     494     651 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.9e-12
       VWA_3   2 evvivvDvsssmsaen.klvkdaLsvalrqLptndkiavllfgt.........kprplfpgsravsaaelqealqkikelelslgasnlegaLkealrq 90 
                 +vv+vv +sssm++ + +lv+daL++++ +L ++d++ ++ fg+          + + +pg+++v  ++ + + qk    ++ +ga     a++  + q
  CCE30968.1 495 DVVVVVPISSSMQGVKiNLVRDALRFMVNTLGDRDRMGLVTFGSggggvpivgMTTKAWPGWANVL-SSIKPVGQKSYRADVVEGAN---VAMDLLM-Q 588
                 8*************99***************************98888888886677999999999.55555555555555533332...2333333.5 PP

       VWA_3  91 pakpgevrsvilltDgssaqgeervsdlisrar.ekirfhalglgsslsaamlqaLAea 148
                 ++++  + +++l++D s ++ +++v   +sra  +ki++h++glg +++++ + +L+  
  CCE30968.1 589 RKHNNPIATIMLISDAS-TADADSVDFVVSRAEaAKITIHSFGLGMTHKPDTMIELSTK 646
                 679999***********.777777777788766599**************999888765 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   4.7   4.1e-06    0.0052       2      43 ..      20      66 ..      19      67 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.1e-06
   zf-RING_2  2 eCpICleel...ssadsvlllpCgHvfhreClerwlrssst...CPlC 43
                eC++C e+l    +++++l+  C Hv h+ C+ +++r       CP+C
  CCE30968.1 20 ECAVCDEPLehtLQGERILQFSCTHVAHEACFYEFIRDI-DgqyCPTC 66
                8****99994333344455557************76433.3479**** PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   4.4   4.9e-06    0.0063       1      43 [.      20      67 ..      20      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.9e-06
   zf-RING_5  1 hCnkCfekl...skeekfyltsCgHifCekClkkll..ekeavCpiCr 43
                +C +C e+l      e++   sC+H+++e+C+ +       ++Cp+C+
  CCE30968.1 20 ECAVCDEPLehtLQGERILQFSCTHVAHEACFYEFIrdIDGQYCPTCE 67
                6********66555556*******************9999*******7 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   3.0   7.3e-06    0.0094       6      47 ..      20      65 ..      16      68 .. 0.80
   2 ?   -3.6   0.1       6.9   8.8e+03      43      49 ..     661     667 ..     655     669 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.3e-06
  Zn_ribbon_17  6 sCayCe....lavkgrvvlcgvCeHvlHasCarewfenddlaeCps 47
                  +Ca+C+     +++g  +l  +C Hv+H++C  e     d + Cp+
    CCE30968.1 20 ECAVCDepleHTLQGERILQFSCTHVAHEACFYEFIRDIDGQYCPT 65
                  799997222246788999****************977777699996 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.9
  Zn_ribbon_17  43 aeCpsGC 49 
                    eC +GC
    CCE30968.1 661 RECLAGC 667
                   5899999 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   3.9     3e-05     0.038       1      43 []      21      66 ..      21      66 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3e-05
  zf-RING-like  1 CeaCke...ivtqGvrCsnesCnvrlHvdCfqhyirthsskkCpkC 43
                  C++C+e     +qG r  + sC+   H+ Cf ++ir    + Cp+C
    CCE30968.1 21 CAVCDEpleHTLQGERILQFSCTHVAHEACFYEFIRDIDGQYCPTC 66
                  77777522256899999999************************** PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.5   5.4e-05     0.069       1      40 []      20      66 ..      20      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.4e-05
  zf-C3HC4_2  1 kCpiCldmlkdpsvvt.....pCgHvfCqkCilrsLeekn..eCPlC 40
                +C++C + l+ ++         C Hv ++ C+ + +++ +   CP+C
  CCE30968.1 20 ECAVCDEPLEHTLQGErilqfSCTHVAHEACFYEFIRDIDgqYCPTC 66
                6******999986543444569************999866669**** PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.0   9.8e-05      0.13       1      41 []      21      66 ..      21      66 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.8e-05
                -TTT-S--SS-E......E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepn.....elleCkHsfCskCirkilksrkkvkCPlC 41
                C++C e ++ +          C+H  +++C  + +++   ++CP+C
  CCE30968.1 21 CAVCDEPLEHTLqgeriLQFSCTHVAHEACFYEFIRDIDGQYCPTC 66
                9********9999**99999****************977888**** PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.3   0.00015       0.2      13      55 .]      20      67 ..      14      67 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
     zf-rbx1 13 acieckapgdee...cpvvlGeCgHaFHlhCiskWlkt..rkvCPlcr 55
                +c  c++p +++     + + +C+H+ H  C  + ++    + CP+c+
  CCE30968.1 20 ECAVCDEPLEHTlqgERILQFSCTHVAHEACFYEFIRDidGQYCPTCE 67
                5666666666665554566669****************98999****5 PP

>> DUF1272  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.9   0.00074      0.95       7      48 ..      20      67 ..      17      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00074
     DUF1272  7 nCecCdkdlppdseearicsyEctFCa..eCaeevl....envCPncg 48
                +C  Cd+ l+++ +  ri  + ct+ a  +C  e +     + CP c 
  CCE30968.1 20 ECAVCDEPLEHTLQGERILQFSCTHVAheACFYEFIrdidGQYCPTCE 67
                8************************86336999988322235799997 PP

>> zf-C3H2C3  Zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.2    0.0041       5.3       1      34 [.      21      66 ..      21      67 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0041
   zf-C3H2C3  1 CdnCglkLdyp.....fvaysCkHlvHakCa.......deevCPkC 34
                C  C+ +L+       + ++sC H+ H  C        d + CP+C
  CCE30968.1 21 CAVCDEPLEHTlqgerILQFSCTHVAHEACFyefirdiDGQYCPTC 66
                6666666666522222468***********6233333334669999 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.1    0.0016       2.1       1      28 [.      20      50 ..      20      51 .. 0.88
   2 ?   -3.7   0.0       8.6   1.1e+04       4      13 ..     340     349 ..     340     350 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0016
  zf-RING_11  1 eCsICLeefk...pgqalfilpCsHtFHfkC 28
                eC++C e+++   +g+++   +C H+ H  C
  CCE30968.1 20 ECAVCDEPLEhtlQGERILQFSCTHVAHEAC 50
                9****99999765688999999********9 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.6
  zf-RING_11   4 ICLeefkpgq 13 
                 IC  e kp+q
  CCE30968.1 340 ICVKEKKPSQ 349
                 9***999998 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.8     0.066        84       3      35 ..      17      51 ..      15      54 .. 0.75
   2 ?    5.5   1.0     0.013        16       9      32 ..      49      72 ..      43      74 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.066
  Prok-RING_1  3 tgkkCpvCgkelkee..dDiVvCpeCgtpyHraCy 35
                 +g++C vC+++l++      +    C  + H aC+
   CCE30968.1 17 VGSECAVCDEPLEHTlqGERILQFSCTHVAHEACF 51
                 7899*******998655555566778888888887 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.013
  Prok-RING_1  9 vCgkelkeedDiVvCpeCgtpyHr 32
                 +C  e+  + D   Cp+C +p H 
   CCE30968.1 49 ACFYEFIRDIDGQYCPTCEAPLHL 72
                 68889999999999*******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1061 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 7150.79
//
Query:       CCE30969.1  [L=547]
Description: probable CCT8-component of chaperonin-containing T-complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.5e-154  513.4  12.2   6.3e-154  513.2  12.2    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.018   14.6   0.2       0.08   12.5   0.0    2.1  2  PrpR_N      Propionate catabolism activator
       0.04   13.5   0.0         12    5.4   0.0    2.6  3  DUF2204     Nucleotidyl transferase of unknown function (DUF2


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  513.2  12.2    1e-157  6.3e-154       1     490 [.      38     530 ..      38     531 .. 0.98

  Alignments for each domain:
  == domain 1  score: 513.2 bits;  conditional E-value: 1e-157
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 +a++v+t+lGP G++K+++n+ +k+++T+D+atil+el++ hPaakllv+a+++q+ e+GD T+ v++LageLl++ae+l+++g++ ++i+ gyeka +
  CCE30969.1  38 IASTVQTSLGPYGRNKIVINHLQKMILTSDAATILRELDVVHPAAKLLVMASQQQEAEMGDATNLVIVLAGELLRKAEDLLRMGLKASDIVIGYEKAQN 136
                 7899*********************************************************************************************** PP

                 HHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHH.HCHCCCSEECSCCCEECCCCEECECTTSEEESEEEESS--SSTTSSC CS
  Cpn60_TCP1 100 kaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAv.klieenekeldlgrikvvkieggsledselveGlvldkgvlspdmpk 197
                  ale L+  av+   + +++ eL k++rt++ sk+  +e + l++lv++Av  +++++  ++++++i+vvki ggsle+s++v+G+v+ k++ ++   k
  CCE30969.1 137 FALETLDTLAVDKVEDIRNQAELSKAIRTVIASKQNGNE-DLLADLVAEAVlAVLPKTPANFNVDNIRVVKIMGGSLEQSKVVKGMVFPKEPEGS--VK 232
                 ******999888888899****************88887.***********99999999***********************************9..9* PP

                 EEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHHT-- CS
  Cpn60_TCP1 198 klenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlakatGat 296
                 k + akv++++++++  +tetk+tv l++a+e+ +++k ee+qle  ++++++sg +vv+c +++ dla h+l+++gil++r ++k++l+r+++++Gat
  CCE30969.1 233 KAHRAKVAVFTCPIDNSQTETKGTVLLHNAKEMMDFSKGEEAQLETAIKELHDSGLRVVICGDKVGDLAMHYLNRYGILCIRILSKFELRRVCRVVGAT 331
                 *************************************************************************************************** PP

                 EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECE.SSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCTS CS
  Cpn60_TCP1 297 avssledltpeelGtakkveeekigsekttiieev.ksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaksv 394
                 ++++l+ + p+e+G+++ ve+ +ig +++t++++  +  ++at++lrgat++ ld++era++d++nvvk++++d ++vpG+Gate++l+++++++ +++
  CCE30969.1 332 PLARLGAPMPDEMGNIDVVETLEIGGDRVTVFRQEdEITRTATLVLRGATQNHLDDVERAVDDGVNVVKAITRDARLVPGAGATEIQLSARIQAHGEKT 430
                 ********************************95437899*********************************************************** PP

                 XCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTX.TTEEEETTTTC...EEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXX CS
  Cpn60_TCP1 395 sgeeqlaieafakALevipktLaeNaGldpievlaklraahnkge.kelgidvesge...iidlveagvvDplkvkrqalksAteaastiLrideiika 489
                 sg  q+ai+++++A+evip+tLae +Gld++e+l++l+a h+k+e  ++gidve+++   + d++e+g++D l+ k +a+k+Ateaa+t+L++d+ii+a
  CCE30969.1 431 SGLSQYAIKKYGEAFEVIPRTLAESCGLDATETLSRLYATHHKNEdGNTGIDVENNNntgTLDAKEEGILDLLASKAWAIKLATEAARTVLSVDQIIVA 529
                 ***************************************997776579*******9999999***********************************99 PP

                 X CS
  Cpn60_TCP1 490 k 490
                 +
  CCE30969.1 530 R 530
                 7 PP

>> PrpR_N  Propionate catabolism activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.3e-05      0.08      72     135 ..     237     303 ..     230     320 .. 0.69
   2 ?   -2.5   0.0      0.56   3.3e+03       7      28 ..     385     405 ..     381     423 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
      PrpR_N  72 ekialvgfeniikglktlsel.ldldieiytinseee..aeaavkelkaegvevvvGdgvvadlAek 135
                  k+a+++ +   ++++t   + l+   e++ +++ ee  +e+a+kel+++g +vv+++  v dlA +
  CCE30969.1 237 AKVAVFTCPIDNSQTETKGTVlLHNAKEMMDFSKGEEaqLETAIKELHDSGLRVVICGDKVGDLAMH 303
                 56677776666666666555524666777777777765589****************9999999966 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.56
      PrpR_N   7 ievvegdleeavelakeleaeg 28 
                 ++ ve  ++++v+++k++ +++
  CCE30969.1 385 LDDVERAVDDGVNVVKAI-TRD 405
                 555666777777777766.444 PP

>> DUF2204  Nucleotidyl transferase of unknown function (DUF2204)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.1   6.5e+03     111     143 ..     201     233 ..     192     248 .. 0.73
   2 ?    5.2   0.0    0.0025        15       4      32 ..     275     303 ..     272     308 .. 0.88
   3 ?    5.4   0.0    0.0021        12     104     153 ..     347     397 ..     337     418 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.1
     DUF2204 111 eiggvevkvislEdyivlKaraareeaeeelde 143
                 +i  v+++  slE+  v K + + +e e  +++
  CCE30969.1 201 NIRVVKIMGGSLEQSKVVKGMVFPKEPEGSVKK 233
                 455566777778888888888777777666655 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0025
     DUF2204   4 alaevlkvLeekgvkfvviGgtvvelalg 32 
                 +l  ++k+L++ g++ v+ G+ v +la+ 
  CCE30969.1 275 QLETAIKELHDSGLRVVICGDKVGDLAMH 303
                 688999*****************999875 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0021
     DUF2204 104 LerakeveiggvevkvislEdyivlKaraa.reeaeeeldeiarlikelkl 153
                 ++  ++ eigg +v v + Ed i + a    r   ++ ld ++r ++++ +
  CCE30969.1 347 IDVVETLEIGGDRVTVFRQEDEITRTATLVlRGATQNHLDDVERAVDDGVN 397
                 6778999*******************9865277888999*99999998443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3968.85
//
Query:       CCE30970.1  [L=295]
Description: uncharacterized protein CPUR_04821 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00012   22.4   1.9    0.00021   21.7   0.1    2.4  3  HMG_box      HMG (high mobility group) box
    0.00067   19.4   0.6    0.00067   19.4   0.6    2.2  2  CCDC106      Coiled-coil domain-containing protein 106
      0.004   17.7   4.8     0.0085   16.7   1.9    2.8  2  HMG_box_2    HMG-box domain
  ------ inclusion threshold ------
        1.8    9.2   6.4        1.9    9.2   0.4    3.2  2  SlyX         SlyX
        4.2    6.6  10.5        4.1    6.7   0.1    2.1  2  DUF4407      Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2   4.4e+03      42      62 ..      23      43 ..      22      48 .. 0.81
   2 !   21.7   0.1   5.8e-08   0.00021       2      67 ..     157     226 ..     156     228 .. 0.91
   3 ?   -1.9   0.2       1.3   4.6e+03      55      63 ..     231     239 ..     224     256 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
                SHHHHHHHHHHHHHHHHHHHH CS
     HMG_box 42 lseeeKkkYeekaekekarye 62
                l++++ + Y++k  k+k r +
  CCE30970.1 23 LPPSVEEAYRRKCVKLKNRTN 43
                778888999999999998865 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 5.8e-08
                 -SS--HHHHHHHHHHH....HHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   2 kRplsafflfskeqra....klkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpe 67 
                 k+p +af l++ e r+    klk  + e   aei  +l   W +l++ e++ Y+ ka+k+ +r +k+k++
  CCE30970.1 157 KTPKTAFELYCLEARPgleeKLKDDDGEGGDAEIDEELTHAWDDLPAPEREDYQIKADKLSERAQKAKKA 226
                 89***********99544448899999999************************************9986 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.3
                 HHHHHHHHH CS
     HMG_box  55 ekekaryek 63 
                 +++k+  e+
  CCE30970.1 231 KEAKEDAEE 239
                 333333333 PP

>> CCDC106  Coiled-coil domain-containing protein 106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.6   1.9e-07   0.00067      17     103 ..      55     139 ..      42     163 .. 0.58
   2 ?    1.2   6.1     0.069   2.5e+02      61     108 ..     212     260 ..     192     278 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.9e-07
     CCDC106  17 kiswlqkriedLeeeRdFLRcqlekfissksle.........aeaekeskskksekkaeksesessssseesddsssdssessessegsstekkkk 103
                 +++ +++++e+L  eR FL  ql+k +s++  +         ++++k+ + k+ ++k++  +  +++ s++s            ++ +s++  + k
  CCE30970.1  55 RLARIKRQVEKLRMERAFLLEQLSKRTSANVEDsdgspspppTPKDKPLRIKRGHRKSTLLDGDAKATSNNS-----------FKEPASPSDSQAK 139
                 778899*********************777665444444444444444444444444444443333333333...........3333222222222 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.069
     CCDC106  61 sekkaeksesessssseesddsssdssessessegsstekkkkkkkk.k 108
                 + +k   + ++++++ +e+++ + d++e++ ++eg s +k+ ++++  +
  CCE30970.1 212 KADKLSERAQKAKKAAKEAKEAKEDAEEEGYEKEGRSRHKREAQDEDvE 260
                 3344444555556666666677788999999999999999999987743 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.9   2.4e-06    0.0085       3      69 ..     155     224 ..     153     245 .. 0.88
   2 ?   -2.2   2.9       1.9   6.7e+03      48      55 ..     236     243 ..     224     265 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.4e-06
                 -.-SS--HHHHHHHTTHHHHHHHT--....-SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-S CS
   HMG_box_2   3 kpkaarnAYalfvqemipelkrkGnp....viglaevsklcsekWkalseeeKekYeekAkedkkrydrea 69 
                  +k ++ A+ l+ +e +p l +k  +      g ae+ +++   W  l++ e+e Y+ kA ++ +r+++  
  CCE30970.1 155 TSKTPKTAFELYCLEARPGLEEK-LKdddgEGGDAEIDEELTHAWDDLPAPEREDYQIKADKLSERAQKAK 224
                 5899999***********99999.333545777899************************99999988755 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.9
                 HHHHHHHH CS
   HMG_box_2  48 eeeKekYe 55 
                 ++e e Ye
  CCE30970.1 236 DAEEEGYE 243
                 33344444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4   0.00053       1.9      26      65 ..      56      95 ..      34      96 .. 0.81
   2 ?    0.8   1.0      0.21   7.7e+02      30      59 ..     210     239 ..     208     245 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00053
                HHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXX CS
        SlyX 26 vaeqqqqidrlqrqlrllaerlkeleessgaseaeeepPP 65
                +a+  +q+++l+ + + l e+l+++ +++ ++ +  + PP
  CCE30970.1 56 LARIKRQVEKLRMERAFLLEQLSKRTSANVEDSDGSPSPP 95
                78999*****************999999987777444444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHHT-XXXXXXXXXXXX CS
        SlyX  30 qqqidrlqrqlrllaerlkeleessgasea 59 
                 q + d+l ++ ++ ++  ke++e+++++e+
  CCE30970.1 210 QIKADKLSERAQKAKKAAKEAKEAKEDAEE 239
                 667789999999999999998888776543 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0012       4.1     182     239 ..      28      83 ..      13      92 .. 0.85
   2 ?    1.6   7.1     0.041   1.5e+02     177     235 ..     219     275 ..     120     289 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0012
     DUF4407 182 gpaakekkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaaaa 239
                 ++a+++k  +l+ +++e++++++   a+ rla+ +++ ++l+ era   ++  ++++a
  CCE30970.1  28 EEAYRRKCVKLKNRTNEVEDANDA--ARLRLARIKRQVEKLRMERAFLLEQLSKRTSA 83 
                 6789999*****************..99999999999999999998777776666555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.041
     DUF4407 177 gvaGkgpaakekkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqa 235
                 + +   +aake+k++ ++a++e  e +++  ++++++a+++  + ++ +++++ +++++
  CCE30970.1 219 RAQKAKKAAKEAKEAKEDAEEEGYEKEGR--SRHKREAQDEDVEMANYDTEDQDQDQDQ 275
                 12222222222222222222222222222..4444444444444444333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1963  (0.109487); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 2040.81
//
Query:       CCE30971.1  [L=528]
Description: probable RMD1-protein required for Meiotic Division [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-52  177.9   0.3    2.9e-52  177.3   0.3    1.3  1  DUF155    Uncharacterised ACR, YagE family COG1723


Domain annotation for each model (and alignments):
>> DUF155  Uncharacterised ACR, YagE family COG1723
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.3   0.3   1.6e-56   2.9e-52       1     176 []     303     475 ..     303     475 .. 0.95

  Alignments for each domain:
  == domain 1  score: 177.3 bits;  conditional E-value: 1.6e-56
      DUF155   1 vfiFknGsvVfwgldeeeeknflnkllkflneeselpreeeqeteeleyvydeqsessrikgdvivl.kskslleklaiShalaqSvkLdvlEesldel 98 
                 vf+F++G+vV+wg++e++e++fl+++ kf  e+      +  ete ++++y++ +++ ri++d i+l ++++ + kl+iShalaqSvk +++Ee+++++
  CCE30971.1 303 VFLFDYGVVVIWGMTEAQEAKFLKEIAKFELEK---LAPDDIETELFNFYYTR-EYQARIYNDFITLrDKNNYMIKLSISHALAQSVKTSLYEELISTT 397
                 8****************************5554...45555559******998.999**********87789*************************** PP

      DUF155  99 lestekipkelakkgklklsrkellkktgellslrinlnlkselldtPdffWeepeleslyeavseyleikeRikiLn 176
                 +e++++ip+++a +gk++lsrk++  ++g+l+ lri + l+ ++ldtP++fW ep+le++y+av++yle+++R+ +Ln
  CCE30971.1 398 VETCKDIPAHIALTGKINLSRKQINMQIGDLFILRIAIHLNGSVLDTPELFWVEPQLEPVYQAVRSYLEMDQRVGLLN 475
                 ****************************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3735.35
//
Query:       CCE30972.1  [L=423]
Description: uncharacterized protein CPUR_04823 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-15   55.8   0.0    8.7e-15   55.1   0.0    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0013   18.4   0.1     0.0029   17.2   0.1    1.5  1  Ni_hydr_CYTB     Prokaryotic cytochrome b561


Domain annotation for each model (and alignments):
>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   9.7e-19   8.7e-15       2     128 ..      13     141 ..      12     143 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 9.7e-19
                      EEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.....TTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGG..GHHHHHH CS
  Sacchrp_dh_NADP   2 liiGa.GsvGqavaellarhfdvdaeitvadrskeklealaaka.....lgvrfeaialdaenyeavLaallkegdlvvnlsppi..ssldvlk 87 
                      +++Ga G++Gq + e +a h + d +++va+rs+ kl+ l+ +       +   +++ ++++++++ L++l++++ +v+  ++p+  +++   +
       CCE30972.1  13 IVLGAtGYTGQLTSEHIATHLPTDLRWAVAGRSEPKLQILVGECqklnpDRLAPSIELVNINDKAQ-LKSLVEKACVVITTVGPYclYGELTFR 105
                      89*********************99**************998887777666666777788888888.******************999****** PP

                      HHHHHT-EEEESS-BCGCCSCHCCSHHHHHTHHHHHHCTSE CS
  Sacchrp_dh_NADP  88 aCietgvhyvdtsiskeertnyalreavlklkekakeagvt 128
                      +C+e+g+hy+d        +++++ +++ k++  ak+ g++
       CCE30972.1 106 LCAEAGTHYIDCTG-----EAPWVAQMIKKYEGTAKKTGAI 141
                      ***********555.....59***************99986 PP

>> Ni_hydr_CYTB  Prokaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   3.2e-07    0.0029      34     121 ..     281     382 ..     263     399 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.2e-07
                   --S-GGG-HHHH......HHH..HHHHHHHHH.HHHHHHH------------STTTSSSSS----------------TT.....THHHHHHHHHHHH CS
  Ni_hydr_CYTB  34 lywgdsgkaral......Hkl..aGlvllall.lfrllwlkkakkpspriifrqikrdltlllrgrkpeagknnplqkl.....vhlllyvllvvli 116
                    +w++ +kar++      H    +G +ll+ +  fr+l+ k+ ++p +  +++ + r+   ++ +  p+   n+ ++++     +h+ ly+l+ v  
    CCE30972.1 281 FTWAEYFKARNWlhgiavHLAlaIGGLLLVFIaPFRILVKKFVYQPGEGVSREDMAREELEYRGTASPDLASNPTKKQAfcrawYHGGLYTLTGVFL 377
                   5555566655555333338774433344444448999999****************************************************99988 PP

                   HHHHH CS
  Ni_hydr_CYTB 117 ltGll 121
                   + G l
    CCE30972.1 378 AQGAL 382
                   87766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2882.16
//
Query:       CCE30973.1  [L=92]
Description: probable RPL43B-60S large subunit ribosomal protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-39  133.4  10.1    2.5e-39  133.2  10.1    1.0  1  Ribosomal_L37ae  Ribosomal L37ae protein family
     0.0017   18.3   3.9     0.0027   17.7   3.9    1.3  1  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
     0.0072   15.9   0.9      0.042   13.4   0.1    2.2  2  Sgf11            Sgf11 (transcriptional regulation protein)
  ------ inclusion threshold ------
      0.023   14.7   1.0      0.031   14.3   1.0    1.2  1  DUF1451          Zinc-ribbon containing domain
      0.025   14.6   6.1       0.04   13.9   0.8    2.2  2  zf-BED           BED zinc finger
      0.049   13.8   2.1      0.069   13.3   2.1    1.3  1  zf-RING_13       RING/Ubox like zinc-binding domain
      0.087   13.1   2.6        1.8    8.9   0.1    2.1  2  C1_2             C1 domain
       0.74   10.3   6.3       0.75   10.3   0.9    2.3  2  zf-H2C2_2        Zinc-finger double domain


Domain annotation for each model (and alignments):
>> Ribosomal_L37ae  Ribosomal L37ae protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2  10.1   1.1e-42   2.5e-39       1      85 []       4      88 ..       4      88 .. 0.99

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 1.1e-42
                     XXXXXX-GGGGTTSS-HHHHHHHHHHHHHHHS-BEESSSSSSEEEEEETTEEEETTTTEEEE-BSSSSS-HHHHHHHH-XXXXXX CS
  Ribosomal_L37ae  1 rtkkvgiaGkygtrYGaslrkrvkkieisqhakytCpfcgktkvkRkavgiwkCkkcgktvaGgAytpettsaktvksairrlke 85
                     rtkkvg++GkygtrYGaslrk+vkk+ei+qhakytC+fcgk +v+R ++giw+Ck+c++t+aGgAy++ t++a++++s++rrl+e
       CCE30973.1  4 RTKKVGVTGKYGTRYGASLRKQVKKMEITQHAKYTCTFCGKVTVRRHSTGIWNCKSCKRTIAGGAYVVATPAAAAMRSTLRRLRE 88
                     79********************************************************************************986 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   3.9   1.2e-06    0.0027      19      46 .]      37      63 ..      30      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.2e-06
  Zn_Tnp_IS1595 19 fvCPhCgsrkayriktrglfqCkeCrkq 46
                    +C +Cg+ +++r +t g + Ck+C+++
     CCE30973.1 37 YTCTFCGKVTVRRHST-GIWNCKSCKRT 63
                   68*****99******9.*********85 PP

>> Sgf11  Sgf11 (transcriptional regulation protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.17   3.9e+02       4      12 ..      36      44 ..      33      45 .. 0.83
   2 !   13.4   0.1   1.9e-05     0.042       6      19 ..      56      69 ..      51      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.17
                EEE-TTTSS CS
       Sgf11  4 yvtCpnCgR 12
                 +tC  Cg+
  CCE30973.1 36 KYTCTFCGK 44
                689****96 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.9e-05
                E-TTTSSEEEGGGH CS
       Sgf11  6 tCpnCgRqiaasRF 19
                +C+ C+R+ia++ +
  CCE30973.1 56 NCKSCKRTIAGGAY 69
                7*********9977 PP

>> DUF1451  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.0   1.4e-05     0.031     103     141 ..      25      63 ..      18      64 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
     DUF1451 103 vyqsGevvglGtlvCekCgkelalkkteeippCpkCgat 141
                 + +  e++   +++C+ Cgk +  ++++ i +C++C+ t
  CCE30973.1  25 QVKKMEITQHAKYTCTFCGKVTVRRHSTGIWNCKSCKRT 63 
                 556679******************************976 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.8   1.8e-05      0.04      12      32 ..      32      52 ..      24      56 .. 0.82
   2 ?    4.4   0.7     0.017        38      16      29 ..      54      67 ..      51      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
                GGSS--EETTTTEE----SST CS
      zf-BED 12 lkeqkavCryCgkilsrgggt 32
                +++ k +C +Cgk++ r+++t
  CCE30973.1 32 TQHAKYTCTFCGKVTVRRHST 52
                68999************9665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.017
                --EETTTTEE---- CS
      zf-BED 16 kavCryCgkilsrg 29
                 + C+ C++++++g
  CCE30973.1 54 IWNCKSCKRTIAGG 67
                699********987 PP

>> zf-RING_13  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.1   3.1e-05     0.069       3      35 ..      38      70 ..      36      84 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
                --TTTSS--SEEETTS-EE-TTTHHHTTTSS-E CS
  zf-RING_13  3 vctvcgaapvaksacggwfcgncvpyhaghcht 35
                 ct cg   v + + g w c  c    ag  + 
  CCE30973.1 38 TCTFCGKVTVRRHSTGIWNCKSCKRTIAGGAYV 70
                6**********************9999987665 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.013        30      14      26 ..      32      44 ..      21      48 .. 0.75
   2 ?    8.9   0.1   0.00081       1.8      13      33 ..      49      69 ..      44      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.013
        C1_2 14 dssesfnCsaCgr 26
                +++++++C  Cg+
  CCE30973.1 32 TQHAKYTCTFCGK 44
                5677888888886 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00081
        C1_2 13 edssesfnCsaCgrkidgffY 33
                + s + +nC+ C+r+i g  Y
  CCE30973.1 49 RHSTGIWNCKSCKRTIAGGAY 69
                678899*********988766 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.9   0.00033      0.75      13      25 ..      35      47 ..      25      48 .. 0.82
   2 ?    3.3   0.3     0.058   1.3e+02      13      23 ..      53      63 ..      47      65 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00033
   zf-H2C2_2 13 kpyeCplCdkaFk 25
                 +y+C +C+k+++
  CCE30973.1 35 AKYTCTFCGKVTV 47
                47********987 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.058
   zf-H2C2_2 13 kpyeCplCdka 23
                 +++C++C+ +
  CCE30973.1 53 GIWNCKSCKRT 63
                4689****875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 639.86
//
Query:       CCE30974.1  [L=674]
Description: uncharacterized protein CPUR_04825 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-08   33.5   6.7    2.9e-08   33.5   6.7    2.7  2  PHD           PHD-finger
      3e-08   33.9  20.6    6.5e-07   29.6   1.6    3.6  3  zf-RING_2     Ring finger domain
    7.6e-08   32.5  17.4      4e-07   30.2   0.7    3.3  3  zf-rbx1       RING-H2 zinc finger domain
    3.9e-06   26.3   2.7    3.9e-06   26.3   2.7    2.2  2  PHD_2         PHD-finger
    7.9e-05   22.4   0.5    7.9e-05   22.4   0.5    3.4  3  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    0.00015   21.5   0.8    0.00015   21.5   0.8    3.7  4  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    0.00022   21.2   8.0     0.0075   16.3   0.4    2.4  2  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
    0.00025   20.8   2.1    0.00025   20.8   2.1    3.0  2  Prok-RING_4   Prokaryotic RING finger family 4
     0.0011   18.9   1.0     0.0011   18.9   1.0    3.8  4  zf-RING_5     zinc-RING finger domain
     0.0016   18.0   1.8     0.0016   18.0   1.8    2.7  2  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
     0.0027   17.5   0.6     0.0027   17.5   0.6    3.9  4  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0037   17.2   2.0     0.0037   17.2   2.0    3.0  3  Prok-RING_1   Prokaryotic RING finger family 1
  ------ inclusion threshold ------
      0.024   14.2   3.3      0.046   13.3   0.6    2.5  2  zf-PHD-like   PHD/FYVE-zinc-finger like domain
      0.054   13.5   0.3      0.054   13.5   0.3    4.1  3  zf-RING_UBOX  RING-type zinc-finger
      0.066   13.1   0.5      0.066   13.1   0.5    2.0  2  zf-RING_6     zf-RING of BARD1-type protein
       0.12   12.3   9.5          2    8.4   2.9    2.4  2  zf-RING_9     Putative zinc-RING and/or ribbon
       0.55   10.5   3.3       0.37   11.1   0.2    2.3  2  zf-HC5HC2H    PHD-like zinc-binding domain
        1.1    9.1   4.8        1.6    8.6   1.5    2.6  2  zf-RING_4     RING/Ubox like zinc-binding domain
        5.9    7.1  13.3       0.95    9.6   1.8    3.5  3  Zf_RING       KIAA1045 RING finger
        8.6    6.8  15.2          1    9.7   2.6    2.6  2  zf-RING-like  RING-like domain


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   3.1      0.15   1.3e+02      19      49 ..      90     114 ..      81     117 .. 0.77
   2 !   33.5   6.7   3.3e-11   2.9e-08       2      50 ..     167     210 ..     166     212 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.15
                 TTTSCEEETTTSSSTHSHHSHHSSTBSSTTT CS
         PHD  19 dgCkrwfHqkClkppleseekpegewlCekC 49 
                 dgC++  H +C++   ++++      +C+ C
  CCE30974.1  90 DGCEHVIHDACIRSWAQKTN------TCPIC 114
                 89*********998766332......46666 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 3.3e-11
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50 
                 C +C++ ++ e+ l++Cd+C+ ++H+ C++++     +peg+w+C +C 
  CCE30974.1 167 CPICNS-AEREDILLLCDSCDAAYHTHCIGLD----YVPEGDWYCMECA 210
                 ******.999********************99....569999******7 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.074        66       2      12 ..       6      16 ..       5      25 .. 0.76
   2 !   29.6   1.6   7.2e-10   6.5e-07      18      44 .]      89     115 ..      79     115 .. 0.86
   3 !    8.2   6.8    0.0036       3.2       3      30 ..     167     194 ..     165     210 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.074
   zf-RING_2  2 eCpICleelss 12
                +C ICle+l +
  CCE30974.1  6 QCIICLEPLPR 16
                8******9954 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 7.2e-10
   zf-RING_2  18 llpCgHvfhreClerwlrssstCPlCr 44 
                 l+ C Hv+h  C++ w ++++tCP+Cr
  CCE30974.1  89 LDGCEHVIHDACIRSWAQKTNTCPICR 115
                 337***********************9 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0036
   zf-RING_2   3 CpICleelssadsvlll.pCgHvfhreCl 30 
                 CpIC ++ +++d +ll+  C   +h +C+
  CCE30974.1 167 CPIC-NSAEREDILLLCdSCDAAYHTHCI 194
                 ****.88999999887757*999*****9 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       3.4     3e+03       1      11 [.       5      15 ..       5      22 .. 0.76
   2 !   30.2   0.7   4.4e-10     4e-07      25      55 .]      85     115 ..      67     115 .. 0.83
   3 !   13.4   1.4   8.1e-05     0.073      12      41 ..     165     194 ..     159     196 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.4
     zf-rbx1  1 dtCaiCrnele 11
                ++C+iC ++l 
  CCE30974.1  5 EQCIICLEPLP 15
                58****98875 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 4.4e-10
     zf-rbx1  25 cpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                 ++  l  C+H+ H  Ci++W ++ ++CP+cr
  CCE30974.1  85 IVASLDGCEHVIHDACIRSWAQKTNTCPICR 115
                 5666678***********************8 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 8.1e-05
     zf-rbx1  12 eacieckapgdeecpvvlGeCgHaFHlhCi 41 
                 ++c+ c++ ++e++ + + +C  a+H+hCi
  CCE30974.1 165 NPCPICNSAEREDILLLCDSCDAAYHTHCI 194
                 79**********9****************9 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.4       1.2   1.1e+03       8      33 ..      90     115 ..      88     116 .. 0.81
   2 !   26.3   2.7   4.3e-09   3.9e-06       2      36 .]     177     210 ..     176     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.2
       PHD_2   8 dkCsvaVHasCYGvskesdgeeWlCr 33 
                 d+C+  +H +C +   +++ ++ +Cr
  CCE30974.1  90 DGCEHVIHDACIRSWAQKTNTCPICR 115
                 589999*****999888888666665 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 4.3e-09
       PHD_2   2 npllsCdkCsvaVHasCYGvskesdgeeWlCrrCe 36 
                 ++ll Cd+C  a H +C G+ + ++g +W+C  C+
  CCE30974.1 177 DILLLCDSCDAAYHTHCIGLDYVPEG-DWYCMECA 210
                 789***********************.*******6 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.67     6e+02       1      10 [.       7      16 ..       7      22 .. 0.77
   2 !   22.4   0.5   8.8e-08   7.9e-05      13      41 .]      88     114 ..      74     114 .. 0.87
   3 ?   -0.6   5.4       1.4   1.2e+03       1      41 []     167     209 ..     167     213 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.67
                -TTT-S--SS CS
    zf-C3HC4  1 CpiCleeake 10
                C+iCle +  
  CCE30974.1  7 CIICLEPLPR 16
                *****98765 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 8.8e-08
                 .E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  13 elleCkHsfCskCirkilksrkkvkCPlC 41 
                  l+ C+H ++ +Cir++ +  k+++CP+C
  CCE30974.1  88 SLDGCEHVIHDACIRSWAQ--KTNTCPIC 114
                 5899***************..9999**** PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.4
                 -TTT-S--SS-E...E-TTS--B-CHHHH.HHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn..elleCkHsfCskCir.kilksrkkvkCPlC 41 
                 CpiC +   e      + C+ +++++Ci   ++  ++  +C++C
  CCE30974.1 167 CPICNSAEREDIllLCDSCDAAYHTHCIGlDYVP-EGDWYCMEC 209
                 9***998888776777888888888888413333.566666666 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.28   2.5e+02       1      16 [.       6      21 ..       6      23 .. 0.84
   2 !   21.5   0.8   1.7e-07   0.00015      17      40 .]      91     114 ..      84     114 .. 0.92
   3 ?   -0.3   1.1       1.1   9.7e+02      33      40 .]     163     170 ..     160     170 .. 0.81
   4 ?   -2.9   0.2       7.1   6.3e+03      15      22 ..     206     213 ..     203     214 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.28
  zf-C3HC4_2  1 kCpiCldmlkdpsvvt 16
                +C iCl+ l  +s++t
  CCE30974.1  6 QCIICLEPLPRASTST 21
                7******999887765 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.7e-07
  zf-C3HC4_2  17 pCgHvfCqkCilrsLeekneCPlC 40 
                  C+Hv +  Ci+ + ++ n CP+C
  CCE30974.1  91 GCEHVIHDACIRSWAQKTNTCPIC 114
                 6*************9********* PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.1
  zf-C3HC4_2  33 ekneCPlC 40 
                 ++n CP+C
  CCE30974.1 163 QGNPCPIC 170
                 67899999 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 7.1
  zf-C3HC4_2  15 vtpCgHvf 22 
                   +C H f
  CCE30974.1 206 CMECAHLF 213
                 45777766 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.4   8.3e-06    0.0075      50      83 ..      90     120 ..      77     122 .. 0.83
   2 !    8.1   2.0    0.0031       2.8      34      62 ..     166     195 ..     159     217 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.3e-06
                 BTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB--B CS
  zf-ANAPC11  50 Gkckhnfhlhcilkwletetskglcpmcrqtfkl 83 
                   c+h++h+ ci  w ++    + cp+cr  f++
  CCE30974.1  90 DGCEHVIHDACIRSWAQKT---NTCPICRTPFHF 120
                 45*************8765...68*****98876 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0031
                 --TTCSTTT.TTS-EEEBTTS-EEEHHHHH CS
  zf-ANAPC11  34 tcpsckfpG.ddcplvlGkckhnfhlhcil 62 
                  cp c++   +d  l+  +c+ ++h+hci 
  CCE30974.1 166 PCPICNSAErEDILLLCDSCDAAYHTHCIG 195
                 59***98762566677778*********94 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   2.1   2.8e-07   0.00025      10      38 ..      86     116 ..      81     120 .. 0.85
   2 ?    4.0   0.1     0.051        46      28      39 ..     162     173 ..     159     179 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.8e-07
  Prok-RING_4  10 kailepCgHlvCkeCfdsk..dlssCPlCqr 38 
                  +a l+ C+H++ ++C  s+  + ++CP+C++
   CCE30974.1  86 VASLDGCEHVIHDACIRSWaqKTNTCPICRT 116
                  567899*************76677*****97 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.051
  Prok-RING_4  28 kdlssCPlCqrr 39 
                  ++ + CP+C++ 
   CCE30974.1 162 EQGNPCPICNSA 173
                  56789****975 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0         2   1.8e+03       2       9 ..       7      14 ..       2      25 .. 0.68
   2 !   18.9   1.0   1.2e-06    0.0011      19      44 .]      91     116 ..      84     116 .. 0.93
   3 ?    1.8   0.0      0.26   2.3e+02      34      43 ..     162     171 ..     149     172 .. 0.79
   4 ?   -1.7   2.2       3.2   2.9e+03      10      24 ..     199     213 ..     181     213 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2
   zf-RING_5  2 CnkCfekl 9 
                C +C e+l
  CCE30974.1  7 CIICLEPL 14
                66666666 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.2e-06
   zf-RING_5  19 sCgHifCekClkkllekeavCpiCrk 44 
                  C H+++++C++   +k ++CpiCr+
  CCE30974.1  91 GCEHVIHDACIRSWAQKTNTCPICRT 116
                 6**************9********95 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.26
   zf-RING_5  34 ekeavCpiCr 43 
                 e+ + CpiC+
  CCE30974.1 162 EQGNPCPICN 171
                 56889****7 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 3.2
   zf-RING_5  10 skeekfyltsCgHif 24 
                  +e + y ++C H f
  CCE30974.1 199 VPEGDWYCMECAHLF 213
                 566777888999976 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.8   1.8e-06    0.0016      23      46 ..      91     112 ..      85     116 .. 0.89
   2 ?   -1.3   7.4       1.9   1.7e+03       6      34 ..     166     195 ..     161     211 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.8e-06
  Zn_ribbon_17  23 vCeHvlHasCarewfenddlaeCp 46 
                    CeHv+H +C+r+w ++++   Cp
    CCE30974.1  91 GCEHVIHDACIRSWAQKTN--TCP 112
                   5***************999..787 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.9
  Zn_ribbon_17   6 sCayCelavkg.rvvlcgvCeHvlHasCar 34 
                    C +C+ a +   ++lc +C    H+ C+ 
    CCE30974.1 166 PCPICNSAEREdILLLCDSCDAAYHTHCIG 195
                   5999987766515679************85 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.48   4.3e+02       3      11 ..       5      13 ..       3      21 .. 0.69
   2 !   17.5   0.6     3e-06    0.0027      19      47 ..      91     118 ..      83     121 .. 0.88
   3 ?    4.9   1.8     0.026        24       3      20 ..     165     182 ..     160     195 .. 0.76
   4 ?   -0.6   0.1       1.3   1.2e+03      15      23 ..     204     212 ..     196     214 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.48
                SB-TTTSSS CS
  zf-C3HC4_3  3 eeCviCler 11
                e+C+iCle 
  CCE30974.1  5 EQCIICLEP 13
                578888764 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3e-06
                 TEEEEEE-HHHHHHHHHTT-B-TTT--B- CS
  zf-C3HC4_3  19 pCgHlvlCeeCaekllkrkkkCpiCrrpi 47 
                  C H+ +  +C +++ +++++CpiCr+p 
  CCE30974.1  91 GCEHV-IHDACIRSWAQKTNTCPICRTPF 118
                 59999.99******************996 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.026
                 SB-TTTSSSBS-EEETTE CS
  zf-C3HC4_3   3 eeCviClerprnvvllpC 20 
                 ++C+iC++++r+ +ll C
  CCE30974.1 165 NPCPICNSAEREDILLLC 182
                 689999999999888665 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.3
                 EEETTEEEE CS
  zf-C3HC4_3  15 vvllpCgHl 23 
                 + +++C Hl
  CCE30974.1 204 WYCMECAHL 212
                 445555554 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1         9     8e+03       5      14 ..       5      14 ..       3      16 .. 0.79
   2 ?    4.5   1.2     0.038        34      22      31 ..     110     119 ..      88     121 .. 0.86
   3 !   17.2   2.0   4.1e-06    0.0037       3      34 ..     163     193 ..     161     196 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9
  Prok-RING_1  5 kkCpvCgkel 14
                 ++C +C ++l
   CCE30974.1  5 EQCIICLEPL 14
                 6899998765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.038
  Prok-RING_1  22 vCpeCgtpyH 31 
                  +Cp C tp+H
   CCE30974.1 110 TCPICRTPFH 119
                  6999999999 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 4.1e-06
  Prok-RING_1   3 tgkkCpvCgkelkeedDiVvCpeCgtpyHraC 34 
                  +g+ Cp+C+ + + ed +  C+ C + yH +C
   CCE30974.1 163 QGNPCPICNSA-EREDILLLCDSCDAAYHTHC 193
                  6899****986.44445679************ PP

>> zf-PHD-like  PHD/FYVE-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.61   5.5e+02      19      36 ..      90     107 ..      77     126 .. 0.82
   2 ?   13.3   0.6   5.2e-05     0.046       1      32 [.     167     196 ..     167     201 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.61
  zf-PHD-like  19 qGCslsyhkaClGkRsaR 36 
                   GC + +h aC+ + +++
   CCE30974.1  90 DGCEHVIHDACIRSWAQK 107
                  799999999999776655 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 5.2e-05
  zf-PHD-like   1 CdtCaeskdeekgqlvyCqGCslsyhkaClGk 32 
                  C +C++++  ++  l+ C  C ++yh +C+G 
   CCE30974.1 167 CPICNSAE--REDILLLCDSCDAAYHTHCIGL 196
                  88898887..8889****************96 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4      0.37   3.3e+02       1      11 [.       7      15 ..       7      27 .. 0.79
   2 ?   13.5   0.3   6.1e-05     0.054      14      39 .]      89     112 ..      78     112 .. 0.87
   3 ?   -1.7   4.4       3.5   3.2e+03       1      10 [.     167     177 ..     167     223 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.37
  zf-RING_UBOX  1 CpIClelftdP 11
                  C ICle++  P
    CCE30974.1  7 CIICLEPL--P 15
                  99****99..4 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 6.1e-05
  zf-RING_UBOX  14 l.pCGHtFCreClwelskslegafkCP 39 
                   l +C H+++  C+   +++ +++ +CP
    CCE30974.1  89 LdGCEHVIHDACI---RSWAQKTNTCP 112
                   557**********...9*********9 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3.5
  zf-RING_UBOX   1 CpIClelft.d 10 
                   CpIC++    d
    CCE30974.1 167 CPICNSAEReD 177
                   99999866532 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.5   7.3e-05     0.066      22      51 ..      88     119 ..      82     127 .. 0.81
   2 ?   -3.1   1.3       8.2   7.4e+03      13      19 ..     170     176 ..     163     211 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.3e-05
   zf-RING_6  22 clggcehifcsncisdcf..gsgcpvcytpaw 51 
                  l gceh++   ci         cp+c tp  
  CCE30974.1  88 SLDGCEHVIHDACIRSWAqkTNTCPICRTPFH 119
                 689***********875422679******965 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.2
   zf-RING_6  13 ctdilre 19 
                 c    re
  CCE30974.1 170 CNSAERE 176
                 3333333 PP

>> zf-RING_9  Putative zinc-RING and/or ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.5    0.0041       3.7     179     202 ..      90     115 ..      80     117 .. 0.82
   2 ?    8.4   2.9    0.0022         2     153     203 ..     162     211 ..     159     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0041
   zf-RING_9 179 ekCkavfHkeClkkkekk..ecpkce 202
                 + C++v+H++C+++ ++k  +cp c+
  CCE30974.1  90 DGCEHVIHDACIRSWAQKtnTCPICR 115
                 68**********998877789**997 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0022
   zf-RING_9 153 akgfiCelCkseellfpfqlktverCekCkavfHkeClkkkekk....ecpkcer 203
                 ++g  C +C+s e      ++    C++C+a +H++C+  +        c +c++
  CCE30974.1 162 EQGNPCPICNSAE-----REDILLLCDSCDAAYHTHCIGLDYVPegdwYCMECAH 211
                 6788999999976.....5777889************955433356677888875 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.4       3.6   3.2e+03      32      43 ..     104     115 ..      88     121 .. 0.62
   2 ?   11.1   0.2   0.00041      0.37      29      66 ..     157     194 ..     131     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.6
  zf-HC5HC2H  32 kerkklkCylCk 43 
                 +++k+++C +C+
  CCE30974.1 104 WAQKTNTCPICR 115
                 445556666665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00041
  zf-HC5HC2H  29 kikkerkklkCylCk..kkvGaciqCskkkCkkafHvtCa 66 
                  +++e++ + C +C+  ++  + + C+   C +a+H++C 
  CCE30974.1 157 AEEEEEQGNPCPICNsaEREDILLLCDS--CDAAYHTHCI 194
                 4566777889*****5545789999998..*********6 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.5    0.0018       1.6      20      47 ..      92     118 ..      91     119 .. 0.82
   2 ?    0.1   0.1      0.81   7.3e+02      34      44 ..     161     171 ..     150     174 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0018
   zf-RING_4  20 CgyqiClfCyhrileeeegrCPaCreeY 47 
                 C++ i   C +    ++++ CP Cr+++
  CCE30974.1  92 CEHVIHDACIRSWA-QKTNTCPICRTPF 118
                 88888888877666.579********98 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.81
   zf-RING_4  34 eeeegrCPaCr 44 
                 ee+++ CP C 
  CCE30974.1 161 EEQGNPCPICN 171
                 35688899996 PP

>> Zf_RING  KIAA1045 RING finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.6      0.13   1.2e+02      25      39 ..      92     106 ..      90     115 .. 0.84
   2 ?    9.6   1.8    0.0011      0.95       6      34 ..     165     194 ..     160     203 .. 0.84
   3 ?   -0.0   0.2       1.1   9.7e+02      57      69 ..     203     215 ..     199     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.13
     Zf_RING  25 CtkvfHegClrklgy 39 
                 C++v H+ C+r+  +
  CCE30974.1  92 CEHVIHDACIRSWAQ 106
                 9*********98665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0011
     Zf_RING   6 elCeiCevytaeel.ypCRvCtkvfHegCl 34 
                 + C iC+  ++e++ + C  C+  +H++C+
  CCE30974.1 165 NPCPICNSAEREDIlLLCDSCDAAYHTHCI 194
                 56****99999886268************8 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 1.1
     Zf_RING  57 GWsCaeCdnlnlL 69 
                  W C eC  l +L
  CCE30974.1 203 DWYCMECAHLFQL 215
                 5*******99887 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.6    0.0011         1      18      43 .]      91     114 ..      88     114 .. 0.87
   2 ?    2.2   4.9      0.26   2.3e+02      13      30 ..     181     196 ..     165     209 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0011
  zf-RING-like  18 sCnvrlHvdCfqhyirthsskkCpkC 43 
                    C+  +H+ C++     +++++Cp C
    CCE30974.1  91 GCEHVIHDACIRSWA--QKTNTCPIC 114
                   7***********977..66669**99 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.26
  zf-RING-like  13 rCsnesCnvrlHvdCfqh 30 
                   +C   sC +++H +C+  
    CCE30974.1 181 LCD--SCDAAYHTHCIGL 196
                   698..**********864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1326  (0.0739584); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 4315.36
//
Query:       CCE30975.1  [L=355]
Description: related to MRPL17-mitochondrial ribosomal protein, large subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-29  100.9   0.0    1.9e-28   99.6   0.0    1.7  1  MRP-L46     39S mitochondrial ribosomal protein L46
  ------ inclusion threshold ------
       0.75   10.5   3.8       0.49   11.1   0.4    2.1  2  FYDLN_acid  Protein of unknown function (FYDLN_acid)


Domain annotation for each model (and alignments):
>> MRP-L46  39S mitochondrial ribosomal protein L46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.0   2.1e-32   1.9e-28       2     119 .]      82     217 ..      81     217 .. 0.91

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 2.1e-32
                 EEEEE-B--B--SB-----HHHHHH....HHHHHHHHHHT----HHHHTTHHHHHHHHHHH---------.....----HHHHHHHHHHHHHHS..... CS
     MRP-L46   2 aikagliLsRpPvvtrelspfEkefYkYqkellerlelefskyfyfkkgtlaelkfkelkkklterdeevardigkpdlrqererndeqeikspks... 97 
                  i++gliLsRpP++tr+l+pfE++f++Yqk+l+erl  +f    yfk +t++el++   + k++er+++va++ g ++ +  r++ de +++++ s   
  CCE30975.1  82 VIRSGLILSRPPLLTRKLHPFENAFFFYQKRLEERLNTPFIPSIYFKPDTPRELDW---NIKIKERQGTVAKELGVYKGKGARAWDDELKVGDTLStqe 177
                 699*****************************************************...***********************************99655 PP

                 ..................................----S-SSTT CS
     MRP-L46  98 .yeealeeda.....................rvikpasRvTeaD 119
                    ++                           v++p  R+TeaD
  CCE30975.1 178 gILDS----LlkdaelrvsddaevikaedvvPVERPRERETEAD 217
                 52233....23444777778999999*****************9 PP

>> FYDLN_acid  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   5.5e-05      0.49      22      64 ..      15      57 ..      15      69 .. 0.74
   2 ?   -0.1   0.2      0.17   1.5e+03      62      81 ..     198     217 ..     161     249 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.5e-05
  FYDLN_acid 22 LnkdPivcpkcgeefepeevlksraaaaeaeeakkkkeeeede 64
                L+ +P vc  c ++f p + ++  +a+a+++ea++++++++++
  CCE30975.1 15 LRANPSVCSRCATSFAPRASTRLYSASATTSEASPSEDTASAS 57
                6789****************88888888777775555444333 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.17
  FYDLN_acid  62 edeedeeeeedvsdedadee 81 
                  ++ed + +e  ++++++++
  CCE30975.1 198 IKAEDVVPVERPRERETEAD 217
                 22333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2615.49
//
Query:       CCE30976.1  [L=1202]
Description: related to SMC3-required for structural maintenance of chromosomes [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-60  204.3  20.3    3.9e-60  203.0  20.3    1.8  1  SMC_N         RecF/RecN/SMC N terminal domain
    1.6e-26   92.9   0.2      9e-26   90.5   0.0    2.3  2  SMC_hinge     SMC proteins Flexible Hinge Domain
    3.4e-18   66.5  30.1    6.8e-15   55.7   2.7    4.3  2  AAA_15        AAA ATPase domain
    9.2e-18   65.5   0.2    9.2e-18   65.5   0.2    7.9  6  AAA_23        AAA domain
    2.4e-17   63.7   2.2    2.9e-09   37.2   0.0    3.1  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    7.4e-05   22.2  13.7    7.4e-05   22.2  13.7    7.5  7  GAS           Growth-arrest specific micro-tubule binding
    0.00028   21.1   1.0     0.0015   18.7   0.1    2.8  3  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.004   16.9   0.0     0.0095   15.7   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
  ------ inclusion threshold ------
       0.68   10.4   0.0       0.68   10.4   0.0    6.6  3  ABC_tran      ABC transporter
        1.4    9.4   6.2       0.36   11.4   0.4    3.0  2  PCI           PCI domain


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.0  20.3   2.2e-63   3.9e-60       1     219 [.       2    1178 ..       2    1179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 203.0 bits;  conditional E-value: 2.2e-63
                  EEEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N    1 vlkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeev 97  
                  ++k+++i++Fksy+++tvi pfs++ ++ivG+NGSGKsn++ A++FvL+ ++++++ +e+ + l+h+  ++++v++a+vei+fdn+d+++++ ++ev
  CCE30976.1    2 YIKQIIIQGFKSYKDQTVIEPFSPKTNVIVGRNGSGKSNFFAAMRFVLS-DAYTQMSREERQGLLHE-GSGSAVMSAYVEIIFDNSDDRFPTGNKEV 96  
                  79***********************************************.5788************9.9**************************** PP

                  EEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT........................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................... RF
       SMC_N   98 sisrrvkrkgeseykingkevtkkevsellesagiske........................................................... 135 
                  +++r++  k++ ey +++k vtk++v++lle ag+s++                                                           
  CCE30976.1   97 VLRRTIGLKKD-EYSVDRKVVTKTDVMNLLEAAGFSRSnpyyivpqgrvtaltsmkesdrlnllkevagthvyearraeslkimhdtnhkrekidvs 192 
                  **********9.************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE30976.1  193 lkyikerlreleeekeelrgfqdkdrerrcleyayhhreqvtiqsaledidgarqdgldtndssrteflqgekaiskldakihnlqrelellqidrr 289 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE30976.1  290 qheedrrdcakalaktelkvknlrdgqsaqeqarsqheaelhsvqseisdkekqlaqvlpeyekkkeeeeeirqqldtaeasrtrlfakqsrgsrfk 386 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE30976.1  387 nkserdaflkqevkelnltmnaqkaskleaeqelarvqetiqqteqevaqlrsrlanwssdrvlmvdevteakvqldklnderklirreedklnsii 483 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE30976.1  484 anarrerdqaerelshavdgatarglatirrlkqeqdipgaygtladllevndayrlpveqtagaslfhyvvdnaetatyladylykqhggrvtfmp 580 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE30976.1  581 laqlrprqvnfprsndavpliskikydskydkafqqvfgktvvcinlavaaqyarshgvdgitaegdttnkrgamtggyidprksrleavqsankwr 677 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE30976.1  678 eeyenlidqsrdlrqqielkdqeitgamselqrkeqqlrqaddgfeplkhelrnksghvenersqvdaaikrrdaveknmnvfmgeiaaheaeigtd 774 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE30976.1  775 fkksltsdeeaeleqlstttqqlqkrwnelckerrglertkqllevdlrqnlqlrldqlnsqafenstsggasgglkeaqrelkmaqkalktveasl 871 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE30976.1  872 qetenktdsvtgqidqlgaeksereqvqnelsvrierqqkkmektlqrkalltaqaadcaknirdlgvlpeeafdkyenmeassitnklkrvnealk 968 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCE30976.1  969 kykhvnkkafeqynnftqqqdqlmkrrkeldasqgsieelvehldrrkdeaiertfkqvskefatifgklvpaghgrlviqrrtdrrqdpdesdeea 1065
                  ************************************************************************************************* PP

                  ............................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHC CS
                  ............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
       SMC_N  136 ............................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreeml 202 
                                              +LSgG+k+L+al L+fA+q+ + +p++++De+da+LD++++++va ll++ s++  +Qfi++++r e++
  CCE30976.1 1066 rgsvenytgvgisvsfnskeldeqqriqQLSGGQKSLCALCLIFALQQTESSPMVIFDEVDANLDAQYRTAVAALLESISNEagTQFICTTFRPEIV 1162
                  *****************************************************************************88877669************ PP

                  CC-SCEEEEEEEETTEE CS
                  xxxxxxxxxxxxxxxxx RF
       SMC_N  203 ekadklvgvtkvengvs 219 
                  + adk++gvt+ +n++s
  CCE30976.1 1163 HVADKCYGVTF-HNKTS 1178
                  ***********.66654 PP

>> SMC_hinge  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0     5e-29     9e-26       2     117 .]     522     634 ..     521     634 .. 0.96
   2 ?   -1.3   0.0       1.5   2.6e+03      13      27 ..    1128    1142 ..    1127    1145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 5e-29
   SMC_hinge   2 kgvlGrladlievdegyekAveaalgnrlqalvvedeetakkiieflkkknagratflpldrikqknkadgandknsgavplidlvevddelrkalryl 100
                 +g +G+ladl+ev + y+ +ve+ +g++l++ vv++ eta+ + ++l k+ +gr+tf+pl ++++++ +    +    avpli+ +++d+++ ka++++
  CCE30976.1 522 PGAYGTLADLLEVNDAYRLPVEQTAGASLFHYVVDNAETATYLADYLYKQHGGRVTFMPLAQLRPRQVNFPRSN---DAVPLISKIKYDSKYDKAFQQV 617
                 688***************************************************************99998887...79******************** PP

   SMC_hinge 101 lgdtlvvdsldeAeela 117
                 +g+t+v+ +l++A ++a
  CCE30976.1 618 FGKTVVCINLAVAAQYA 634
                 *************9885 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
   SMC_hinge   13 evdegyekAveaalg 27  
                  ++d +y++Av+a l+
  CCE30976.1 1128 NLDAQYRTAVAALLE 1142
                  6799*******9997 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   2.7   3.8e-18   6.8e-15       1     262 [.       1     359 [.       1     503 [. 0.60
   2 !    8.5  19.7   0.00083       1.5      98     367 ..     754    1160 ..     668    1162 .. 0.68

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 3.8e-18
      AAA_15   1 MkIkkikikNFRslkd.vei.dlseeltvliGkNnsGKSsilealdlFlnnkekkn.....................kkvikiekedleifeniseskd 76 
                 M+Ik+i+i+ F+s+kd + i ++s++++v++G+N+sGKS++  a+ + l+  +                        ++ i+++++d   + n++   +
  CCE30976.1   1 MYIKQIIIQGFKSYKDqTVIePFSPKTNVIVGRNGSGKSNFFAAMRFVLSDAYTQMsreerqgllhegsgsavmsayVEIIFDNSDDRFPTGNKEVVLR 99 
                 ****************8666469**9************************884433899999***********99985555555555555555554444 PP

      AAA_15  77 ikIdvef..................................................................aekekakeyektlkskekkkadlllk 109
                   I ++                                                                   a  e+ k+  +t++++    ++    
  CCE30976.1 100 RTIGLKKdeysvdrkvvtktdvmnlleaagfsrsnpyyivpqgrvtaltsmkesdrlnllkevagthvyearrA--ESLKIMHDTNHKR----EK---- 188
                 44444435577777777777778888888888888888888888888888888888888887777775543220..3333333333332....22.... PP

      AAA_15 110 kkesdlkktikdkklklkknelsdekisvekkks...........kkelpkekeeklekekeelkidkedlkklikkleeslkkee...elknvlksai 194
                   ++   k+ik++  +l++++     +++++++             + + +  e+    +++ l++++++ +       e l++e+   +l+ ++ +++
  CCE30976.1 189 --IDVSLKYIKERLRELEEEKEELRGFQDKDRERrcleyayhhreQVTIQSALEDIDGARQDGLDTNDSSRT-------EFLQGEKaisKLDAKIHNLQ 278
                 ..2222223333333333222222333333332222222100110111222222222223333333322222.......33333335556667777777 PP

      AAA_15 195 iklllisakRnvsdedse..kkssllgklkekileealqekl...eeelteklkeiqeklkeidkklaeelk.........k 262
                 ++l+l + +R   +ed     k  ++++lk k l++ +q+ +   + + + +l ++q+++++++k+la+ l          +
  CCE30976.1 279 RELELLQIDRRQHEEDRRdcAKALAKTELKVKNLRD-GQSAQeqaRSQHEAELHSVQSEISDKEKQLAQVLPeyekkkeeeE 359
                 777777766665554333014444455555555554.333334556677777777777777777777655543322222221 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00083
      AAA_15   98 skekkkadlllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkid.kedlkklikkleeslkkee......... 184 
                  +k+ +   +++   e ++ + +k+  + +++ el + + + ++ +++++   +++  le  k+ l++d  ++l+  +++l+++  +++         
  CCE30976.1  754 EKNMNVFMGEIAAHEAEIGTDFKKSLTSDEEAELEQLSTTTQQLQKRWNELCKERRGLERTKQLLEVDlRQNLQLRLDQLNSQAFENStsggasggl 850 
                  3445555556666677777777777777777777777777777777777777777777777777777777777777776666666666888766666 PP

      AAA_15  185 ......................elknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekl........................e 235 
                                        e +n+  s   +++   a+++  ++  ++  s+ ++ ++k+ e+ lq k+                        +
  CCE30976.1  851 keaqrelkmaqkalktveaslqETENKTDSVTGQIDQLGAEKSEREQVQNE-LSVRIERQQKKMEKTLQRKAlltaqaadcaknirdlgvlpeeafD 946 
                  655555555555555555444433333333333333333333322222222.233333333333333333336777778888888888888888876 PP

      AAA_15  236 eelteklkeiqeklkeidkklaeelkkilkkkidkikkfnykgkkneeieik............................................. 287 
                  +  ++++++i +klk  ++ l +++k + kk +++ ++f  ++ +  +++ +                                             
  CCE30976.1  947 KYENMEASSITNKLKRVNEAL-KKYKHVNKKAFEQYNNFTQQQDQLMKRRKEldasqgsieelvehldrrkdeaiertfkqvskefatifgklvpag 1042
                  667777777777777777777.666666666666644444444444444444778888888888888888888888888888888888889999999 PP

      AAA_15  288 ...........................................ddeelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaq 341 
                                                              de++ + + + G+++l  l l i+ +++     e++  ++++E +a+L  q  
  CCE30976.1 1043 hgrlviqrrtdrrqdpdesdeeargsvenytgvgisvsfnskeLDEQQRIQQLSGGQKSLCALCL-IFALQQT----ESSPMVIFDEVDANLDAQYR 1134
                  99999**********************************99998999999999999999887764.4555555....578999************** PP

      AAA_15  342 kvlikllkelandnktQviitTHSph 367 
                  + ++ ll +++n+  tQ i+tT  p 
  CCE30976.1 1135 TAVAALLESISNEAGTQFICTTFRPE 1160
                  **********************6555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.2   5.1e-21   9.2e-18       2     199 ..       6     207 ..       5     243 .. 0.68
   2 ?  -30.2  50.3        10   1.8e+04      93     199 ..     314     434 ..     209     500 .. 0.54
   3 ?   -7.8  16.9        10   1.8e+04     139     195 ..     671     718 ..     639     803 .. 0.51
   4 ?   -9.2  25.2        10   1.8e+04      93     197 ..     786     915 ..     725     920 .. 0.53
   5 ?   -7.5  25.2        10   1.8e+04      88     195 ..     865    1008 ..     837    1034 .. 0.42
   6 ?    1.0   0.6      0.29   5.2e+02      70     142 ..    1015    1115 ..    1006    1148 .. 0.71

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 5.1e-21
      AAA_23   2 Lkienfrsfrdqe.idF.skgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgry...trsierere 95 
                 + i++f+s++dq+ i+  s++ ++I+G NG+GK+ ++ A++++L    +++sr++++g+ ++      ++  +ayve+ f n d+r    ++++     
  CCE30976.1   6 IIIQGFKSYKDQTvIEPfSPKTNVIVGRNGSGKSNFFAAMRFVLSDAYTQMSREERQGLLHEGSG---SAVMSAYVEIIFDNSDDRFptgNKEV--VLR 99 
                 89*********9978555************************************99999988876...56889*******99999766442222..333 PP

      AAA_23  96 lskkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefelkdkkerleelekeleeledekkllekl.......eqekekekelee 187
                 ++ + +k  +  +++ +++++  ++++      ++++n + + +q+r   +  +++++rl+ l++   +   e++  e l       +++++    l+ 
  CCE30976.1 100 RTIGLKKDEYSVDRKVVTKTDVMNLLEA--AG-FSRSNPYYIVPQGRVTALTSMKESDRLNLLKEVAGTHVYEARRAESLkimhdtnHKREKIDVSLKY 195
                 3333333334444455555444444443..23.334444445777775555556666666666666666666666555555556665556666666666 PP

      AAA_23 188 leeeleeilkel 199
                 ++e+l e+++e 
  CCE30976.1 196 IKERLRELEEEK 207
                 666666666654 PP

  == domain 2  score: -30.2 bits;  conditional E-value: 10
      AAA_23  93 erelskkkgkttkkaklellei..deleqfisellgskkiilnlilflgqerfeefelkdkke....rleelekeleeledekkllekl.......... 175
                 + + ++++++++ +a+l +++   +++e                                  +     l e+ek++ee+e+++++l++           
  CCE30976.1 314 DGQSAQEQARSQHEAELHSVQSeiSDKE----------------------------------KqlaqVLPEYEKKKEEEEEIRQQLDTAeasrtrlfak 378
                 1222222222222222221111111111..................................1111122222222222222222222223333333333 PP

      AAA_23 176 ................................eqekekekeleeleeeleeilkel 199
                                                   ++e e+el  ++e+++++++e+
  CCE30976.1 379 qsrgsrfknkserdaflkqevkelnltmnaqkASKLEAEQELARVQETIQQTEQEV 434
                 34444444444444444444444444455554455677778888888888888874 PP

  == domain 3  score: -7.8 bits;  conditional E-value: 10
      AAA_23 139 gqerfeefelkdkkerleelekeleeledekkllekleqekekekeleeleeeleei 195
                 ++ +++++e ++  ++ ++l++++e + +e+              el+ +e++l ++
  CCE30976.1 671 QSANKWREEYENLIDQSRDLRQQIELKDQEITG---------AMSELQRKEQQLRQA 718
                 333333333333333333333333333333331.........111222222222222 PP

  == domain 4  score: -9.2 bits;  conditional E-value: 10
      AAA_23  93 erelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefel..........kdkkerleelekeleeledekkllekl...... 175
                 e e  ++ +++ +k   el++++   +++++ll+++ +++ ++ + +q + + fe+          k+ + +l+ ++k+l++ e+  ++ e++      
  CCE30976.1 786 ELEQLSTTTQQLQKRWNELCKERRGLERTKQLLEVDLRQNLQLRL-DQLNSQAFENstsggasgglKEAQRELKMAQKALKTVEASLQETENKtdsvtg 883
                 333334444555555556666666667777777777776655554.44455566664555555555444446666666666666666666666677777 PP

      AAA_23 176 ..........eqekekekele.eleeeleeilk 197
                           e +++ ++el+  +e+++++++k
  CCE30976.1 884 qidqlgaeksE-REQVQNELSvRIERQQKKMEK 915
                 67666654532.222222333244444444444 PP

  == domain 5  score: -7.5 bits;  conditional E-value: 10
      AAA_23   88 rsiererelskkkgkttkkaklelleideleqfisellgskki........ilnlilflgqer....................feefel...kdkke 153 
                  +++e + +++++k++++ +++ +l  ++  +++++++l+++ +         l++ ++l ++                         e+   ++  +
  CCE30976.1  865 KTVEASLQETENKTDSVTGQIDQLGAEKSEREQVQNELSVRIErqqkkmekTLQRKALLTAQAadcaknirdlgvlpeeafdkY---ENmeaSSITN 958 
                  455555555555555555555444444444444444333332212122222222222222222444444444444443332221...2222233333 PP

      AAA_23  154 rleelekeleeled.ekkllekl.......eqekekekeleeleeeleei 195 
                  +l+ ++++l++ +   kk +e+         q+ +++kel++ +  +ee+
  CCE30976.1  959 KLKRVNEALKKYKHvNKKAFEQYnnftqqqDQLMKRRKELDASQGSIEEL 1008
                  55555555555444233333333333322233333444444433333333 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.29
      AAA_23   70 kvkayveltfenkdgry............trsiererelskkkgkttkkaklellei..............deleqfisellgskki..ilnlilfl 138 
                   +++ +e+tf+  +++              r + ++r+ ++++ ++ +++++ ++e                + +q+i++l g +k+   l li+ l
  CCE30976.1 1015 RKDEAIERTFKQVSKEFatifgklvpaghGRLVIQRRTDRRQDPDESDEEARGSVENytgvgisvsfnskeLDEQQRIQQLSGGQKSlcALCLIFAL 1111
                  4566699999999998899999999999988888888888888888888877777777777778888887766678888888888885544444444 PP

      AAA_23  139 gqer 142 
                  +q +
  CCE30976.1 1112 QQTE 1115
                  4443 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   8.8e-09   1.6e-05       2      50 ..      28      75 ..      27     117 .. 0.71
   2 ?   -1.8   0.3       1.2   2.2e+03     105     105 ..     381     381 ..     275     535 .. 0.58
   3 !   37.2   0.0   1.6e-12   2.9e-09     177     296 ..     980    1156 ..     886    1162 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 8.8e-09
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslld 50
                nv++G+NgsGKSn++ a++++ + d++ +++  e++g  ++++ +    
  CCE30976.1 28 NVIVGRNGSGKSNFFAAMRFVLS-DAYTQMSREERQGLLHEGSGSAVMS 75
                9********************98.7776666666666666655555554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
      AAA_21 105 l 105
                 +
  CCE30976.1 381 R 381
                 2 PP

  == domain 3  score: 37.2 bits;  conditional E-value: 1.6e-12
      AAA_21  177 gfakekrllqrlvrslklveielsdlgegeeliasvderlrer...................................................... 219 
                   +++  ++ ++l++++k+ ++    ++e +e  +++++  +er                                                      
  CCE30976.1  980 QYNNFTQQQDQLMKRRKELDASQGSIEELVEHLDRRKDEAIERtfkqvskefatifgklvpaghgrlviqrrtdrrqdpdesdeeargsvenytgvg 1076
                  33444445555555555555555555555555555555555556666666777777777777777777777777777777777888888******** PP

      AAA_21  220 .gvvflengdgqelparelSdGtkrllalltallralkkg.sllliDEpEngLHP...kllrrllellkelsrngaQviltT 296 
                    v f+ ++ + +  + +lS G+k+l al ++++ +  ++ + +++DE++++L+     +++ lle +++++   +Q+i+tT
  CCE30976.1 1077 iSVSFNSKELDEQQRIQQLSGGQKSLCALCLIFALQQTESsPMVIFDEVDANLDAqyrTAVAALLESISNEAG--TQFICTT 1156
                  **************************866666666655555**************555555666677766666..******9 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   2.0     0.024        43      73     109 ..     179     215 ..     169     248 .. 0.75
   2 ?    1.1  18.7      0.12   2.1e+02      27     144 ..     266     387 ..     250     389 .. 0.82
   3 !   22.2  13.7   4.2e-08   7.4e-05      31     136 ..     395     504 ..     393     517 .. 0.92
   4 ?    0.4   6.7      0.19   3.5e+02      36     100 ..     678     742 ..     659     768 .. 0.50
   5 ?    0.2   5.1      0.23   4.1e+02      96     143 ..     782     829 ..     773     843 .. 0.67
   6 ?   -1.2  11.6      0.61   1.1e+03      63     130 ..     850     918 ..     840     936 .. 0.46
   7 ?    4.1  10.0     0.014        25      47     130 ..     951    1032 ..     944    1063 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.024
         GAS  73 Lrkqlknyekdkqslknlkarlkelekelkdlkwehe 109
                 ++    + ek  +slk +k+rl+ele+e ++l+ +++
  CCE30976.1 179 MHDTNHKREKIDVSLKYIKERLRELEEEKEELRGFQD 215
                 4555566777888888888888888888888876555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.12
         GAS  27 lIkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrk....qlknyekdkqslknlkarlkelekelkdlkwehevleqrfekveke 121
                  I +l  +i +l+++ e  + +  +++++ ++  + L k e +v++Lr     q +  +++ ++l ++++++++ ek+l ++  e+e ++++ e++ ++
  CCE30976.1 266 AISKLDAKIHNLQRELELLQIDRRQHEEDRRDCAKALAKTELKVKNLRDgqsaQEQARSQHEAELHSVQSEISDKEKQLAQVLPEYEKKKEEEEEIRQQ 364
                 577888888888888899999999999999999999999999999999755445555666777888899999999999999999999999999999999 PP

         GAS 122 rdelykkfeaaiqevqqktglkn 144
                  d+ +++ ++ + + +  + +kn
  CCE30976.1 365 LDTAEASRTRLFAKQSRGSRFKN 387
                 99888888888877777777776 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 4.2e-08
         GAS  31 lKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkq....slknlkarlkelekelkdlkwehevleqrfekvekerdel 125
                 lK+e++el+   ++++    e++qe  r +e++++ e+ev++Lr +l+n ++d++    + +++k +l +l++e k ++ e + l+  ++++ +erd+ 
  CCE30976.1 395 LKQEVKELNLTMNAQKASKLEAEQELARVQETIQQTEQEVAQLRSRLANWSSDRVlmvdEVTEAKVQLDKLNDERKLIRREEDKLNSIIANARRERDQA 493
                 8****************************************************9733336689************************************ PP

         GAS 126 ykkfeaaiqev 136
                 +++  +a++ +
  CCE30976.1 494 ERELSHAVDGA 504
                 **999998765 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.19
         GAS  36 eelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkeleke 100
                 ee ++  ++ + + ++i+ + ++++  + +++++ ++Lr++   +e  k +l+n   ++++  ++
  CCE30976.1 678 EEYENLIDQSRDLRQQIELKDQEITGAMSELQRKEQQLRQADDGFEPLKHELRNKSGHVENERSQ 742
                 33333334444444444444444444444455555555555555555555555444444443333 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.23
         GAS  96 elekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglk 143
                 + e el++l+   ++l++r +++ ker  l+++ +    +++q+ +l+
  CCE30976.1 782 DEEAELEQLSTTTQQLQKRWNELCKERRGLERTKQLLEVDLRQNLQLR 829
                 456677777777777777777777777777777666666666666554 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 0.61
         GAS  63 LkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfe.kvekerdelykkfe 130
                 Lk+a++e++  +k+lk+ e   q+ +n    ++ + ++l + k e e+++ +++ ++e++ ++++k+ +
  CCE30976.1 850 LKEAQRELKMAQKALKTVEASLQETENKTDSVTGQIDQLGAEKSEREQVQNELSvRIERQQKKMEKTLQ 918
                 555555555555555555553333333333333333333333333333332222133333333333333 PP

  == domain 7  score: 4.1 bits;  conditional E-value: 0.014
         GAS   47 kelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfe 130 
                   e s i+++ kr +e Lkk ++ +++  +q +n+ +++ +l++ +++l  ++  +++l ++ +    + e++e+ +++++k+f 
  CCE30976.1  951 MEASSITNKLKRVNEALKKYKHVNKKAFEQYNNFTQQQDQLMKRRKELDASQGSIEELVEHLDRR--KDEAIERTFKQVSKEFA 1032
                  5778899999**************************************99999999997654432..22444444444444444 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.5     1e+04      44      58 ..     623     637 ..     621     641 .. 0.81
   2 ?   -1.9   0.0       2.4   4.2e+03       5      39 ..     821     852 ..     820     860 .. 0.75
   3 !   18.7   0.1   8.4e-07    0.0015      25      89 ..    1087    1142 ..    1069    1143 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.5
     SbcCD_C  44 lalaaalaalyssae 58 
                 +++ +a+aa+y +++
  CCE30976.1 623 VCINLAVAAQYARSH 637
                 89999******9865 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
     SbcCD_C   5 dyRnylsfevevrdedgkekelsrssgtlSGGekq 39 
                 d R++l++ +++ + +  e   ++ sg+ SGG k+
  CCE30976.1 821 DLRQNLQLRLDQLNSQAFE---NSTSGGASGGLKE 852
                 7788888888888555555...7889999999765 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 8.4e-07
     SbcCD_C   25 elsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89  
                  + ++++++lSGG+k  l +l+l +al +  ss         +v++DE  ++lD+++++++ +lle
  CCE30976.1 1087 DEQQRIQQLSGGQK-SLCALCLIFALQQTESS--------PMVIFDEVDANLDAQYRTAVAALLE 1142
                  45789*********.99******999998888........49****************9999986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.3e-06    0.0095      18      47 ..      22      50 ..       6      56 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.3e-06
      AAA_29 18 eidlkgatlltGpsGsGKSTllDAiqalLv 47
                ++++k   +++G++GsGKS ++ A+ ++L 
  CCE30976.1 22 PFSPKT-NVIVGRNGSGKSNFFAAMRFVLS 50
                466665.99****************99996 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00038      0.68      14      32 ..      28      46 ..      23     113 .. 0.89
   2 ?  -11.4  13.5        10   1.8e+04     102     102 ..     375     375 ..     179     499 .. 0.69
   3 ?   -7.5  19.8        10   1.8e+04      79     134 ..    1022    1124 ..     657    1127 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00038
                EEEEESTTSSHHHHHHHHT CS
                xxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlklla 32
                 +ivG+nG+GKS +++++ 
  CCE30976.1 28 NVIVGRNGSGKSNFFAAMR 46
                58**********9999876 PP

  == domain 2  score: -11.4 bits;  conditional E-value: 10
                 E CS
                 x RF
    ABC_tran 102 v 102
                 +
  CCE30976.1 375 L 375
                 1 PP

  == domain 3  score: -7.5 bits;  conditional E-value: 10
                  H.....................................HHHTCHHHHHHHSTTGG....TTCBGESTTS..GGS-HHHHHHHHHHHHHHHT....SS CS
                  x.....................................xxxxxxxxxxxxxxxxx....xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx....xx RF
    ABC_tran   79 n.....................................esdeeiekalsklglke....lkdtvvkssp..ssLSgGqkqrvalarallkk....pk 128 
                  +                                     esdee+   ++++  ++    ++ + +++++  ++LSgGqk+  al+ +++ +    ++
  CCE30976.1 1022 RtfkqvskefatifgklvpaghgrlviqrrtdrrqdpdESDEEARGSVENYTGVGisvsFNSKELDEQQriQQLSGGQKSLCALCLIFALQqtesSP 1118
                  02333333333333333333344555555577777677666666666666655557777777777776677*********99999887654111156 PP

                  EEEEES CS
                  xxxxxx RF
    ABC_tran  129 llllDE 134 
                  ++++DE
  CCE30976.1 1119 MVIFDE 1124
                  777777 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.9       2.1   3.7e+03      40      84 ..     393     437 ..     331     440 .. 0.70
   2 ?   11.4   0.4    0.0002      0.36       8      61 ..     953    1034 ..     946    1037 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHH CS
         PCI  40 esLekkvrerllrqvskiyssislerlaklldlsvdevEkilvkl 84 
                   L+++v+e +l + +++ s+++ e+    ++ + +++E+ +++l
  CCE30976.1 393 AFLKQEVKELNLTMNAQKASKLEAEQELARVQETIQQTEQEVAQL 437
                 467888888888888888888888887777777778888777765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.0002
                  HHHHHTSHHHHHHHHHHH........................HHHHHHHTTHHH..............HHHHHHHHHHHHHHHHHHHCESEE CS
         PCI    8 kalrsgnlsgfseelkdl........................eeelladdglaq..............llesLekkvrerllrqvskiyssi 61  
                   +  +++l++++e+lk++                        +          +              +l++ +++++er+++qvsk + +i
  CCE30976.1  953 ASSITNKLKRVNEALKKYkhvnkkafeqynnftqqqdqlmkrR----------KeldasqgsieelveHLDRRKDEAIERTFKQVSKEFATI 1034
                  5666788999999999997777776666666665544444441..........033456666667777*******************88877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2861  (0.159574); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        85  (0.00474092); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 2.35u 0.39s 00:00:02.74 Elapsed: 00:00:00.69
# Mc/sec: 5223.16
//
Query:       CCE30977.1  [L=224]
Description: uncharacterized protein CPUR_04828 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-06   28.7   0.0    1.7e-06   28.0   0.0    1.5  1  Cation_ATPase  Cation transport ATPase (P-type)
     0.0051   17.1   0.6      0.015   15.6   0.6    1.7  1  Hydrolase      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.9e-10   1.7e-06      43      91 .]      84     131 ..      16     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.9e-10
  Cation_ATPase  43 reetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCthv 91 
                     ++++kv+ ip n +r r + ++k   + +++l+vKGA e +l+ C++v
     CCE30977.1  84 TAQYEKVAAIPLNFERHRSACIVKR-ATRTNLLIVKGAFEEVLRLCSTV 131
                    3569********************7.7*******************985 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.6   1.7e-06     0.015       3     137 ..      19     215 ..      17     219 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-06
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHH...........HHCHHHHHH.HHHHHHHHHHHHHHHHETTTE...................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx...................... RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletg...........sehpigkal.vaaakarsgaltgfatfigrg...................... 67 
                 ++  Dk+GTLt+ e  ++  +++  +    +l ++           ++   +  +  + a++rs++++++++++                         
  CCE30977.1  19 VLSSDKTGTLTKDEITLRHYVEYTGKTNTDVLKLVtvdsvvqgsngNNIDGAT-IeHRMADGRSINTAQYEKVAAIPlnferhrsacivkratrtnlli 116
                 6678**********888888888844444444444556775665432222222.235555555777777777443334456666555555556665555 PP

                 ..................................HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH............................. CS
                 ..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................. RF
   Hydrolase  68 ..................................ayaigkpewltaldippdlgaaigsaqsqgrtvall............................. 103
                                                   +                                                                
  CCE30977.1 117 vkgafeevlrlcstvrqggvavpldfqkkemlvtR----------------------------------Tnrlnregfrallvdlrdedslqeletnmv 181
                 55555666666665555555555544444444443..................................033333333333334444444444444444 PP

                 ..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEE CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 ..qaralavftiadplkvkpeaaeavasLkaagiev 137
                      + +++ i dp  +k++aa+ + +Lk+ g+++
  CCE30977.1 182 leGYGLGGILSIIDP--PKDDAAQSIVELKDLGVQT 215
                 4345778888999**..****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1711.67
//
Query:       CCE30978.1  [L=122]
Description: uncharacterized protein CPUR_04829 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0053   17.3   1.6     0.0076   16.8   1.6    1.3  1  Stc1      Stc1 domain
  ------ inclusion threshold ------
       0.84    9.4   4.3        8.8    6.1   0.2    2.2  2  zf-CSL    CSL zinc finger


Domain annotation for each model (and alignments):
>> Stc1  Stc1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.6   8.5e-07    0.0076      51      84 ..      27      60 ..       9      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.5e-07
                -EEE-SSS--EEESTTS-HHHHHS.SS---HHHH CS
        Stc1 51 teleCsaCqktkpldeFsksqrrkpdaarCkdCv 84
                   +Cs C+ ++++++F+ + r +  +++C++C+
  CCE30978.1 27 SARQCSKCSYILQISHFASARRPSVLTKTCERCQ 60
                4579*****************************8 PP

>> zf-CSL  CSL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.7    0.0012        10      44      56 ..      28      40 ..      14      43 .. 0.73
   2 ?    6.1   0.2   0.00098       8.8       5      29 ..      40      66 ..      37      80 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0012
                EEEETTSSEEEEE CS
      zf-CSL 44 vvqCssCSLwikV 56
                  qCs CS ++++
  CCE30978.1 28 ARQCSKCSYILQI 40
                569*****99998 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.00098
                GGGSEEETTTTEEEEEE.TTSSE.EEE CS
      zf-CSL  5 ledfefdeeeesyyypC.RCgde.Fel 29
                ++ f       +++++C RC+++  ++
  CCE30978.1 40 ISHFASARRPSVLTKTCeRCQNYgRQV 66
                6667777778889********985555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 992.48
//
Query:       CCE30979.1  [L=850]
Description: related to nitrate assimilation regulatory protein nirA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-08   33.8   0.2    3.1e-08   33.0   0.2    1.4  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.2   1.7e-12   3.1e-08     106     207 ..     272     367 ..     249     444 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.7e-12
  Fungal_trans 106 tssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwesddaseet 202
                    +++ a+++ ++ va rl+ +l+L+ + +         +++ ++es+rR+ w  FylD+++a         ++++++++LPc ++ + e   + +e+
    CCE30979.1 272 IRGEFAKVWQWFDVASRLVLELRLNWDVFPPD------RSFVQQESLRRIVWHLFYLDRMLAGGSDEYIACRAEDMKIALPCTESAYREDRIVQAER 362
                   55566889**********************99......9***********************998888878**************999999888888 PP

  Fungal_trans 203 lvetk 207
                   l++++
    CCE30979.1 363 LYDKP 367
                   88754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 6580.30
//
Query:       CCE30980.1  [L=183]
Description: uncharacterized protein CPUR_04831 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1388.43
//
Query:       CCE30981.1  [L=626]
Description: related to pacC-transcription factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-07   30.4  21.9      7e-06   26.2   3.3    3.7  3  zf-C2H2      Zinc finger, C2H2 type
    6.5e-05   23.4   1.8    6.5e-05   23.4   1.8    3.7  3  zf-C2H2_4    C2H2-type zinc finger
    0.00027   20.9   1.3    0.00076   19.4   1.3    1.8  1  zf-C2H2_6    C2H2-type zinc finger
    0.00041   20.7   2.9    0.00041   20.7   2.9    3.2  3  zf-H2C2_2    Zinc-finger double domain
    0.00041   20.5   0.6     0.0015   18.8   0.6    2.0  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
      0.026   14.9   0.6      0.096   13.1   0.6    2.1  1  zf-met       Zinc-finger of C2H2 type
      0.042   14.1   4.6       0.11   12.8   4.6    1.8  1  zf-C2H2_8    C2H2-type zinc ribbon
        1.2    9.8   8.9          1   10.0   0.7    3.0  3  FOXP-CC      FOXP coiled-coil domain


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.8    0.0015       3.3       2      23 .]      46      70 ..      45      70 .. 0.91
   2 !    6.1   3.4    0.0077        17       2      23 .]      82     105 ..      81     105 .. 0.96
   3 !   26.2   3.3   3.1e-09     7e-06       1      23 []     111     133 ..     111     133 .. 0.98

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0015
                EET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  2 kCp..dCgksFkrksnLkrHirt.H 23
                +C    C+++F ++++L  Hi+  H
  CCE30981.1 46 TCRwnQCNQKFGSPELLYEHICDrH 70
                788889***************9777 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0077
                 EET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCp..dCgksFkrksnLkrHirtH 23 
                 +C+   C  +   +++ ++Hir+H
  CCE30981.1  82 TCHwnSCRTTTVKRDHITSHIRVH 105
                 79999******************9 PP

  == domain 3  score: 26.2 bits;  conditional E-value: 3.1e-09
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 +kC+ CgksFkr+ +Lk+H +tH
  CCE30981.1 111 HKCDMCGKSFKRPQDLKKHVKTH 133
                 79********************9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.085   1.9e+02       3      20 ..      47      66 ..      45      66 .. 0.81
   2 ?   -0.9   1.6       1.9   4.4e+03       3      23 ..      83     105 ..      81     106 .. 0.62
   3 !   23.4   1.8   2.9e-08   6.5e-05       1      23 [.     111     133 ..     111     134 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.085
   zf-C2H2_4  3 Cpi..CgksFsskkaLlrHl 20
                C++  C++ F s++ L  H+
  CCE30981.1 47 CRWnqCNQKFGSPELLYEHI 66
                55555********9999995 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.9
   zf-C2H2_4   3 Cpi..CgksFsskkaLlrHlkth 23 
                 C++  C+++   ++++ +H++ h
  CCE30981.1  83 CHWnsCRTTTVKRDHITSHIRVH 105
                 55555766666666677777766 PP

  == domain 3  score: 23.4 bits;  conditional E-value: 2.9e-08
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 +kC+ CgksF+++++L++H+kth
  CCE30981.1 111 HKCDMCGKSFKRPQDLKKHVKTH 133
                 69********************9 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   1.3   3.4e-07   0.00076       2      24 ..     111     133 ..     111     135 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.4e-07
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksH 24 
                 h+C+ C+ksF+  q+L +H k+H
  CCE30981.1 111 HKCDMCGKSFKRPQDLKKHVKTH 133
                 9*********************9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       2.9   6.6e+03      16      25 ..      46      57 ..      42      58 .. 0.77
   2 !   20.7   2.9   1.8e-07   0.00041       3      26 .]      99     122 ..      97     122 .. 0.93
   3 ?    0.4   0.1      0.46     1e+03       1       9 [.     125     133 ..     125     136 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.9
   zf-H2C2_2 16 eCp..lCdkaFk 25
                +C    C+ +F 
  CCE30981.1 46 TCRwnQCNQKFG 57
                677778**9997 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 1.8e-07
   zf-H2C2_2   3 rrHirkHtgekpyeCplCdkaFkt 26 
                 + Hir+H + kp++C+ C+k+Fk+
  CCE30981.1  99 TSHIRVHVPLKPHKCDMCGKSFKR 122
                 58********************96 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.46
   zf-H2C2_2   1 nLrrHirkH 9  
                 +L++H ++H
  CCE30981.1 125 DLKKHVKTH 133
                 69******9 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.6   6.6e-07    0.0015       2      24 ..     111     133 ..     110     134 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6.6e-07
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  + C  C K Fk  ++l++H+k++
   CCE30981.1 111 HKCDMCGKSFKRPQDLKKHVKTH 133
                  89*******************98 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.6   4.3e-05     0.096       2      21 ..     112     131 ..     111     134 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.3e-05
      zf-met   2 yCelCnvtfnsesqlksHlq 21 
                  C++C ++f+ +++lk H +
  CCE30981.1 112 KCDMCGKSFKRPQDLKKHVK 131
                 6*****************76 PP

>> zf-C2H2_8  C2H2-type zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   4.6   5.1e-05      0.11       2      93 ..      47     137 ..      46     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.1e-05
   zf-C2H2_8   2 cssygcrlafpnvrelaqhlrvhlsptqslegklfrcstascaetfpsmqelvahtklhykpnryfkcencllrfrthrslfkhlhvcsdqs 93 
                 c    c   f +++ l +h+  +   ++s++   + c   sc  t    + + +h ++h  p +  kc+ c   f+  + l kh++  +d+s
  CCE30981.1  47 CRWNQCNQKFGSPELLYEHICDRHVGRKSTNNLSLTCHWNSCRTTTVKRDHITSHIRVHV-PLKPHKCDMCGKSFKRPQDLKKHVKTHADDS 137
                 666789999999999999999999999*******************************96.88999*******************9999886 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.7   0.00046         1       4      31 ..      44      71 ..      43      81 .. 0.84
   2 ?    3.4   0.5     0.053   1.2e+02       6      27 ..      82     103 ..      79     115 .. 0.89
   3 ?   -1.0   0.0       1.3   2.8e+03      12      29 ..     116     133 ..     112     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00046
     FOXP-CC  4 kgvCkWPgCekvledveeflkhlnseHa 31
                + +C+W  C++ + + e +++h+ + H 
  CCE30981.1 44 HLTCRWNQCNQKFGSPELLYEHICDRHV 71
                568********************99995 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.053
     FOXP-CC   6 vCkWPgCekvledveeflkhln 27 
                 +C+W  C + + + ++ ++h++
  CCE30981.1  82 TCHWNSCRTTTVKRDHITSHIR 103
                 7*******************86 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.3
     FOXP-CC  12 Cekvledveeflkhlnse 29 
                 C k ++  +++ kh++++
  CCE30981.1 116 CGKSFKRPQDLKKHVKTH 133
                 9999**********9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4475.30
//
Query:       CCE30982.1  [L=345]
Description: uncharacterized protein CPUR_04833 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-37  126.5   0.0    4.8e-37  125.9   0.0    1.3  1  Stb3      Putative Sin3 binding protein


Domain annotation for each model (and alignments):
>> Stb3  Putative Sin3 binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.0   2.7e-41   4.8e-37       1      86 [.      93     182 ..      93     185 .. 0.95

  Alignments for each domain:
  == domain 1  score: 125.9 bits;  conditional E-value: 2.7e-41
        Stb3   1 itpeklakahlpeillekGPlaiRhitaalttsvpgFsklspskaRRlvvaalegr....adkendvvfekvGWGrWdakkvgepereek 86 
                 it  +lak+hlpeill++GPlaiRhi+++lttsvpgF  ++pskaRRlvv++legr    ++ ++dv+fekvGWGrWdak++g ++r+++
  CCE30982.1  93 ITGIMLAKYHLPEILLNHGPLAIRHIMGYLTTSVPGFCGIPPSKARRLVVGVLEGRggerGGVNGDVEFEKVGWGRWDAKRRGMASRDRQ 182
                 7889****************************************************99888999******************99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2596.93
//
Query:       CCE30983.1  [L=689]
Description: related to DNA topoisomerase III [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-104  350.6   0.0   7.2e-100  334.9   0.0    2.1  2  Topoisom_bac     DNA topoisomerase
    1.1e-19   70.6   0.0    2.5e-19   69.4   0.0    1.7  1  Toprim           Toprim domain


Domain annotation for each model (and alignments):
>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.9   0.0  8.1e-104  7.2e-100       2     360 ..     165     523 ..     164     531 .. 0.91
   2 !   13.8   0.0   2.5e-06     0.022     364     412 ..     575     626 ..     570     627 .. 0.87

  Alignments for each domain:
  == domain 1  score: 334.9 bits;  conditional E-value: 8.1e-104
  Topoisom_bac   2 inenlvdaaeaRrelDwliGinlsrlltkklkg......kkvlsaGRVqtptLaliveRereienFvpeeyweveatlkkekkekekkkkkkkerik 92 
                   ++e++vda+ aR elD++iG++++r++t++l+       + +ls+G +q ptL+++v+R+   +nFvpe++w +++ + +++++k  +++++++r++
    CCE30983.1 165 LDEKQVDAVSARIELDLRIGYAFTRFMTNSLRPlggpmeDLTLSYGSCQFPTLGFVVDRYFRVKNFVPEPFWLIKLMH-DRDGKKV-NFSWARNRLF 259
                   6899*************************55522235558999********************************875.5555553.7********* PP

  Topoisom_bac  93 dkeeaeaileklkkk.eakvesvekkekkkppplpfdtttLqkeasrklglsakktlsiaqkLYekaglitYpRTdstrlseeaelkailealakky 188
                   d+     i+e++    +a+v++v++k ++k++plp++t++Lqk+a++ l+++ +++++ia+ LY+k g+i+YpRT+++r+++  +lka++++++ + 
    CCE30983.1 260 DRMTTIIIYERCLAAkTARVTNVQEKPTRKYKPLPLTTVELQKAATSLLRMTGQQAMTIAEGLYNK-GFISYPRTETDRFDKGMNLKALVQKQTPD- 354
                   ************9955*************************************************8.****************88******99985. PP

  Topoisom_bac 189 gkeylefaekllkktkkksvvknkkveaHeAIrPteelpklkelsddekklYelIvrrflaslmkdakyeettvkleveeeefkasgktilekGfkk 285
                    +++ +fa+ l +   k+   ++ +++aH++I+P++ ++  + ls+de +lYe++vrrfla++++da+ + ttv+l+ + e f+a g ++le+++++
    CCE30983.1 355 -ERWGQFAQGLVNGAFKQPREGRHDDKAHPPIHPITYAAP-SVLSSDEGRLYEYVVRRFLACCSEDAVGSATTVDLQYGSEVFTACGVIVLERNYLE 449
                   .77899888888755444345566669********88775.89*****9************************************************ PP

  Topoisom_bac 286 vykeekkeeeeeelpelkegeevkvkeveleekkTkppkryteasLikamekagiGtpaTraeiieklvergYve 360
                   vy +e+++++ +elp++++ge+++ +e+ ++e+kT+pp+++tea+Li++m+ +giGt+aT+ae+i+k+++r+Y+ 
    CCE30983.1 450 VYIYESWNNT-KELPKFTRGETFQPTEALMTEGKTSPPSYLTEADLIALMDANGIGTDATMAEHIQKIQDREYAA 523
                   **66666665.37************************************************************86 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.5e-06
  Topoisom_bac 364 kslvptelGkalvell..ekf.kdlvspelTaeleekLdeIaegkadakevl 412
                   + +vpt+lG al+ ++   +f  +l +p l++e+e k+++I eg+ +++ vl
    CCE30983.1 575 RVFVPTQLGVALILGYdrMNFeTSLGKPFLRKEMELKMKAICEGQTTKAVVL 626
                   5689************76566777*********************9988776 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   2.8e-23   2.5e-19       1     103 []       3     150 ..       3     150 .. 0.91

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 2.8e-23
                 EEEEESSHHHHHHHHHTHT............................STEEEEEEESSSSEEEHS..........TTEEEEE...........ECTTTH CS
      Toprim   1 elvivEgpsdaktiakalg............................sgfqavtaslGhildlet..........efkpvye...........eiedkk 50 
                 +l+++E+ps  k++a  l+                            ++ +++t + Gh++++e+                            + edkk
  CCE30983.1   3 VLCVAEKPSISKAVAGHLSggrmqthntrnrfvknysfdfdfgpsmgQCSVTMTCVAGHLTNVEFtseyknwqypP-----PeslfnapivtsIQEDKK 96 
                 69***************************************************************76666555550.....05555566568899**** PP

                 HHHHHHHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHTHHHTT.TEEEEEESSS CS
      Toprim  51 kvlkalkelakradeiilatDpDreGeaiawellevlkellen.kigrvefsei 103
                 ++ k l+ +ak a  ++++tD+DreGe+i+ e++++++++++n +++r++fs+i
  CCE30983.1  97 SMAKNLADQAKYARVLVIWTDCDREGEHIGQEIVDAARKGNSNiQVKRARFSNI 150
                 ***************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 4583.69
//
Query:       CCE30984.1  [L=363]
Description: uncharacterized protein CPUR_04835 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-37  128.3   5.4    3.8e-37  128.0   5.4    1.1  1  DUF1295   Protein of unknown function (DUF1295)


Domain annotation for each model (and alignments):
>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   5.4   2.1e-41   3.8e-37       3     235 .]      74     325 ..      72     325 .. 0.89

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 2.1e-41
     DUF1295   3 lislltkssslvDvlwgvlfvilavltlll..sea.aklrrllvllLvvlWglRLalhllrr.tlkkg.eDkryeelrkelgktial.lsllvvfvlQa 95 
                 ++s   +++s++D+lw++l+ + +++++l    ++  + r  lv+++ + W++RL++++ rr  ++ g eD+r+e ++++++  i    +++++ ++Q 
  CCE30984.1  74 IVSEFNRNYSQIDRLWSILPNLHVLHLALWarMAGlPHARIDLVAIFSTAWSIRLTYNYWRRgGYQVGsEDYRWEIVKSKIPGIIFFfFNVTFISTIQS 172
                 6888999****************9999988664445788889********************99**99*************998543044455889*** PP

     DUF1295  96 vllylva.lpvlla.aaskeeqalkaldviglalwlvgivlealaDqQlsaf..................kkdpankgkvldsGLwrysRHPNYfgeal 174
                 vll+ ++ +p +++  as+ e++ + +d++ l++ l  ++ e ++D Q++++                  ++d++ +  +++sGLw ysRHPN+++e+ 
  CCE30984.1 173 VLLFAISgVPAYTIlLASRFEPEPRLADYVYLVVQLGLVLSEWVSDGQQQKYqnakhrynkdaklprgwsQADLD-R-GFNTSGLWAYSRHPNFLAEQT 269
                 *****9867877651566778899******************************************887666666.3.499****************** PP

     DUF1295 175 iWwglflialealeglealaiagpllltlllvfvsgipllEkkalkkykdkeeyreYqkkt 235
                 iW+ l+  ++ a+++l  ++i+g     l+l+f++++ l+E+ +  ky   +ey+eYq+++
  CCE30984.1 270 IWFVLYQWSCYATNSLYSWTILG--SGSLILLFQGSTWLTEAITAGKY---PEYAEYQRRV 325
                 ***********************..8999************8888888...8******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2822.88
//
Query:       CCE30985.1  [L=368]
Description: probable 4-nitrophenylphosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-25   87.4   0.0    1.1e-24   86.5   0.0    1.5  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase
      2e-15   56.6   0.1    3.7e-15   55.8   0.1    1.4  1  Hydrolase_like  HAD-hyrolase-like
      2e-08   34.8   0.0    3.9e-05   24.0   0.0    2.7  2  Hydrolase       haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.12   12.4   0.1       0.43   10.6   0.0    1.9  3  HAD_2           Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   2.4e-28   1.1e-24       1     100 [.      40     190 ..      40     191 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 2.4e-28
                  EEEESTTTSEETTEE-TTHHHHHHHHHHTT...............................................-EEEEEE---SS-HHHHHHHH CS
  Hydrolase_6   1 flfDidGvLwrgdkaipgaaealnalraag...............................................kpvvllTNnsskseeeyakkl 51 
                  flfD+dGvLw gd++++g++e++++l+a+g                                               k++v++TNns+ks+++y+ kl
   CCE30985.1  40 FLFDCDGVLWSGDHVFDGVPETIRMLKARGlapplpqtnmalpplslllfcsapprfpekvwakpclildppppkkgKRTVFVTNNSTKSRQDYVSKL 137
                  89************************************************************************************************ PP

                  HHTT----GGGEEEHHHHHHHHHHHHSX....XXEEEEESXHHHHHHHHHTTX CS
  Hydrolase_6  52 eklgvditeeqvvtsataaaeylkkrka....dkkvlvigeeglreelkeagf 100
                  ++l ++ + e+v+ s+++aa y++++ +    ++kv+v+ge g++ el ++g+
   CCE30985.1 138 SNLHIPCETEDVFGSSYSAAFYISRILQlppgKNKVFVLGEVGVETELTAMGI 190
                  **********************9998444455*****************9997 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.1   8.2e-19   3.7e-15       1      75 []     287     364 ..     287     364 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 8.2e-19
                     E.STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EE.EEESSSSS-TTTHHH..HHHHHT---SEEES- CS
  Hydrolase_like   1 vlgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwks.vLVltGvtrpedlee..pehkptyvaddlaea 75 
                     vlgKP++ m+d+   ++++d+++++miGDrl+tDi+++ + ++ + + VltGv+++ed  +  + + p+y+ad l ++
      CCE30985.1 287 VLGKPSQAMMDAVEGKFQLDRSRTCMIGDRLNTDIKFGVEGKLGGtLHVLTGVHKKEDWDRedAVAVPAYYADKLSDL 364
                     68****************************************986588********98776434479******99885 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1   0.00071       3.2       3      23 ..      39      62 ..      37      77 .. 0.69
   2 !   24.0   0.0   8.8e-09   3.9e-05     106     206 ..     221     324 ..     114     327 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00071
                EEEEESBTTTBCHH...HHHHHHH CS
                xxxxxxxxxxxxxx...xxxxxxx RF
   Hydrolase  3 tvvfDkdGTLttge...psvedvi 23
                t++fD+dG+L+ g      v ++i
  CCE30985.1 39 TFLFDCDGVLWSGDhvfDGVPETI 62
                789999999999984444444444 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 8.8e-09
                 HHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGE.SEEEEHHCES..STTTSHHHHHHHHHHHTSTGGGEEEEESSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 106 ralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyf.daviasdiet..vakpspegkvaaireLqgkpeevamVGDgv 200
                 ++ av+   d +  + ++   +++L+ +g  v+l+t+ +++ +++    +G   ++   +++s  +    +kps+ ++ a+  ++q + ++++m+GD++
  CCE30985.1 221 EVGAVLCGLDFHVNYLKLCTGMHYLR-NGA-VFLATNTDSTLPMHQSFFVGaGSCLaPLEYSSGRKPlvLGKPSQAMMDAVEGKFQLDRSRTCMIGDRL 317
                 55566666666666666666677888.788.9****999987776666666634444666666666677****************************** PP

                 H.HHHHH CS
                 x.xxxxx RF
   Hydrolase 201 n.Daaal 206
                 n D++++
  CCE30985.1 318 NtDIKFG 324
                 ****986 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.2   5.2e+03       2      10 ..      41      49 ..      40      55 .. 0.85
   2 ?   -3.6   0.0       2.2   9.9e+03      80      95 ..      54      69 ..      51      70 .. 0.86
   3 ?   10.6   0.0   9.7e-05      0.43     134     166 ..     289     322 ..     280     327 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.2
       HAD_2  2 iFDlDgTll 10
                +FD Dg+l 
  CCE30985.1 41 LFDCDGVLW 49
                8*****996 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.2
       HAD_2 80 pydgvkelLeeLkeag 95
                ++dgv e++  Lk++g
  CCE30985.1 54 VFDGVPETIRMLKARG 69
                7999*****9999876 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 9.7e-05
       HAD_2 134 kKPdpeviekaleklklkkeeviyvGDsp.tDie 166
                  KP+++++ ++  k++l+++++ ++GD   tDi+
  CCE30985.1 289 GKPSQAMMDAVEGKFQLDRSRTCMIGDRLnTDIK 322
                 59**************************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 2277.88
//
Query:       CCE30986.1  [L=104]
Description: uncharacterized protein CPUR_04837 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 789.91
//
Query:       CCE30987.1  [L=187]
Description: uncharacterized protein CPUR_04838 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-22   78.1   2.2    7.4e-22   77.6   0.8    1.8  2  DUF4149   Domain of unknown function (DUF4149)
  ------ inclusion threshold ------
      0.012   15.9   0.0      0.019   15.2   0.0    1.4  1  DUF1772   Domain of unknown function (DUF1772)
      0.028   14.7   0.8      0.041   14.2   0.8    1.3  1  SCAMP     SCAMP family


Domain annotation for each model (and alignments):
>> DUF4149  Domain of unknown function (DUF4149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.8   1.2e-25   7.4e-22       1     100 [.      15     123 ..      15     125 .. 0.94
   2 ?   -0.7   0.0      0.31   1.8e+03      82      90 ..     159     167 ..     140     180 .. 0.58

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 1.2e-25
     DUF4149   1 lslglllGsqlwvtfvvapvlfrsLprhqfgelqsklFplyfglglalsvlllltevavg........seklasee.llqlllllvvllltllnafyle 90 
                 +s+g+llG+ ++++f+++p+ f +++r+ f+++q+klFp+yfg+++a++v+l+lt++ +         s+ l+ +  + +l +++++++++l+n +++ 
  CCE30987.1  15 ISYGALLGTSIFHSFINGPTTFTVVERPIFSAIQAKLFPIYFGMQTAIPVILALTFPGNAllgvssgpSGLLETASrWDSLAPIATMFVTGLINLVVVL 113
                 69*******************************************************999*******9888877773557889**************** PP

     DUF4149  91 pritslkeqr 100
                 p ++++ ++r
  CCE30987.1 114 PATNKVIKER 123
                 *****98887 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.31
     DUF4149  82 tllnafyle 90 
                 +lln f ++
  CCE30987.1 159 SLLNLFTIG 167
                 333333333 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   3.3e-06     0.019      12     128 ..      42     163 ..      18     172 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.3e-06
     DUF1772  12 Pallslpassslllkqwrrlfkrg.kavfpplallsalafayla........araasrgarllylaaaallllsivpyTllvmvP.tNnkLaal..... 95 
                 P++++ +      +k+++  f  g + ++p++++l+  + a+l              ++++    +a ++ ++++ ++ l+v+ P tN+ ++++     
  CCE30987.1  42 PIFSAIQ------AKLFPIYF--GmQTAIPVILALTFPGNALLGvssgpsglL--ETASRWDS--LAPIATMFVTGLINLVVVLPaTNKVIKERrgqak 128
                 4444333......34455545..557777777777777777444788865331..22222222..3333344446677788888866644444445444 PP

     DUF1772  96 .k.eedakekedeaevrellerWgrlnlvRavlal 128
                  + ++  +e+ + +e+r+l +++g l+ v ++l l
  CCE30987.1 129 rDgKQYYEEGPHSEEMRALSKKFGMLHGVSSLLNL 163
                 4334555555666**************99888766 PP

>> SCAMP  SCAMP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.8   6.9e-06     0.041      64     146 ..      19     102 ..       1     125 [. 0.69

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.9e-06
       SCAMP  64 kflglailylllftpasfvlwyrplYkafrsdssfnflvfffvfffqlvfsiiqavGip.......gsglaGlitaislfasniavgill 146
                 + lg +i+  ++  p+ f +  rp++ a+++       +f + f++q+++ +i a+ +p       +sg +Gl+ + s ++s + ++ ++
  CCE30987.1  19 ALLGTSIFHSFINGPTTFTVVERPIFSAIQA------KLFPIYFGMQTAIPVILALTFPgnallgvSSGPSGLLETASRWDSLAPIATMF 102
                 56799***********************983......46778889**************5555555555555555555444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1437.34
//
Query:       CCE30988.1  [L=718]
Description: related to ATP-dependent DNA helicase II, 80 kDa subunit (KU autoantigen protein P86) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-38  131.5   0.0      4e-38  130.2   0.0    1.7  1  Ku_PK_bind  Ku C terminal domain like
    1.3e-28  100.1   0.0    2.2e-28   99.4   0.0    1.3  1  Ku          Ku70/Ku80 beta-barrel domain
    1.1e-10   41.7   0.1    1.9e-10   40.9   0.1    1.4  1  Ku_N        Ku70/Ku80 N-terminal alpha/beta domain
     0.0024   18.2   0.2      0.008   16.4   0.1    1.8  2  VWA         von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> Ku_PK_bind  Ku C terminal domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.2   0.0     9e-42     4e-38       1     119 [.     596     715 ..     596     716 .. 0.98

  Alignments for each domain:
  == domain 1  score: 130.2 bits;  conditional E-value: 9e-42
  Ku_PK_bind   1 dPvedFkkllaqkdeedlvekavkqlksvIeqlvedslgdssydkaveclkalReeaieeeepelyNdFlrdlkkklqs.e.ggdrrefWkelvkkekl 97 
                 +Pv+dFk ++a +++  ++e+a+kql++v++++++ds+gds+yd+a+ecl a+Ree++  eepe+yN+F+rdlkk l+s   ggdrr+fW   ++ ++l
  CCE30988.1 596 NPVPDFKHMIAAARNVTEIEDASKQLGAVVRSFITDSFGDSKYDRAMECLGAMREELLGIEEPEMYNAFIRDLKKGLLSgAlGGDRRDFWF-KLRWSRL 693
                 7**************99*************************************************************987*********6.******* PP

  Ku_PK_bind  98 glIskdeaessdvteeeAkeFl 119
                 glI+++++e s+vt++eA+eF+
  CCE30988.1 694 GLIDNTQSEVSNVTHDEAQEFI 715
                 *********************7 PP

>> Ku  Ku70/Ku80 beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0     5e-32   2.2e-28       7     197 ..     244     452 ..     239     457 .. 0.79

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 5e-32
          Ku   7 ipVklykateeakkpkfkkldketne...................pvkvetkyvcsdtg.....e.vdeedivkgyeyGgevvpltkeelekiksfdsk 80 
                 i V+ y +t  a+++  + +  ++++                    vk+ ++y  +d         v+ e + kgyeyG++ v +++ e++  k  +++
  CCE30988.1 244 IYVERYFKTHVARPLGASTVVVKSDQatqstqtldedpmegvefsAVKQARTYKVNDPTapggkRdVEFEALAKGYEYGRTAVHISESEYNITKLETER 342
                 6677777777777766666555555534445555555555666666666666666663247888459999*********************555566** PP

          Ku  81 glkllgFvplseilkeylsikssyfiyPddkdekgstkafsaLveamleskkvaivrfvlrskskprlvaLvPqeeelsseeekeglvlvtLpfaddiR 179
                 +++++gF+ +++  +++l+  ++ + y++ +d k+++ a+s+L+ a+le++ +a++r+v ++   p lv LvP+   ++ +   e+l+ v+Lpfa+d+R
  CCE30988.1 343 SFSIIGFILRDK-YEHFLNMGEVCVTYARRNDVKSEV-ALSSLIWALLELESYAVARIVTKDGKDPLLVLLVPH---IEPNF--ECLYDVPLPFAEDVR 434
                 **********99.99999999*************888.************************************...55544..7************** PP

          Ku 180 slkfpsldeeeeekknkp 197
                  ++fp+ld+  +++ ++ 
  CCE30988.1 435 AYRFPPLDKVMTVTGETL 452
                 *******33244444444 PP

>> Ku_N  Ku70/Ku80 N-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.1   4.2e-14   1.9e-10       1     161 [.       6     158 ..       6     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 4.2e-14
                 EEEEEEE-SHHHHCTTCCSCC.HHHHHHHHHHHHHHHHHHCTCS.EEEEEEEESSSSTBS....TTTCTTEEEEEECCCHHHHHHHHHHCCHHHCCHHH CS
        Ku_N   1 avvfviDvspaMfesskeees.pfelalkciaellkrkvisrsk.DlIavvlygtdesen....keqlenitvlreldlpdaellkelkqivesedasv 93 
                 a++f++D++ +M+e  ++  +  ++ ++ ++ + +++ v +++k   ++v+   tde+ n    ++++ +i v+++l + ++  l  l++ +++     
  CCE30988.1   6 ATIFILDLGASMAERHSGRDEsDLDWSMRYVWDKITDIVAANRKtLCVGVIGLKTDETRNklqeADGYGHISVIQDLSNITMSGLRALQSAIKP----- 99 
                 69************99988777**********************4469**********************************************..... PP

                 HCCCTTSS-TTHHHHHHHHHHHHHHTTSSES.EEEEEEEESSSSTCCGHHHHHHHHHHHHHHHHHHCTE CS
        Ku_N  94 eglaedssqasllsaLivclellqkvgkkls.kkriflftdlddpfedsdklelilqklkakDlrderi 161
                     ++   ++  sa+ v+++++   +kkl+  +ri+l+t+      d+d +e i  k       d +i
  CCE30988.1 100 ----SQTLAGDAISAIVVAIDMMDTFTKKLKwIRRIVLVTNGQGVM-DADDIEDIARK-----MNDSKI 158
                 ....8899999**************888887369********9999.55555555555.....233444 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.57   2.6e+03     127     168 ..      43      84 ..      30      95 .. 0.76
   2 !   16.4   0.1   1.8e-06     0.008      65     151 ..      90     193 ..      73     210 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.57
                 HHGCTEEEEEEEESSSHHHHHHHHHSSSSCHHCEEEESSHHH CS
         VWA 127 akeqgikvfavGvgnadekelLnkiasepgeghvftvtdfee 168
                 + +++ k+ +vGv    ++e  nk+ +  g gh+   +d ++
  CCE30988.1  43 IVAANRKTLCVGVIGLKTDETRNKLQEADGYGHISVIQDLSN 84 
                 556677888999966666666899988888999999998875 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.8e-06
                 HHHHHTGSGGGGSSC-HHHHHHHHHHHHHHHHGT.SST.TSEEEEEEEESS--CSS..HTHHHHHHHHGCTEEEEEEEE................SSSH CS
         VWA  65 lsalnnlkysgggttntgkalkyaleklfkssag.aRe.nakkviilltdGksndg..dpkeaaneakeqgikvfavGv................gnad 143
                 l+al++  +++++t   g+a+++ +  +++++    ++ +  + i+l+t G+  ++  d+++ a+++ +++i++ ++Gv                +++ 
  CCE30988.1  90 LRALQS-AIKPSQTL-AGDAISAIVV-AIDMMDTfTKKlKWIRRIVLVTNGQGVMDadDIEDIARKMNDSKIQLTILGVdfddfeygfkeedkppNKDE 185
                 566777.57778888.8999996666.777777753335899**********977557*********************77776666666666665555 PP

                 HHHHHHHH CS
         VWA 144 ekelLnki 151
                 +++ L+++
  CCE30988.1 186 NEHILKTL 193
                 55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4779.07
//
Query:       CCE30989.1  [L=524]
Description: uncharacterized protein CPUR_04840 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1056  (0.058899); expected 358.6 (0.02)
Passed bias filter:                      691  (0.0385409); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3815.75
//
Query:       CCE30990.1  [L=106]
Description: probable heat shock protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-07   29.7   0.0    5.9e-07   29.6   0.0    1.1  1  Pam16     Pam16
    0.00013   22.0   0.0    0.00022   21.3   0.0    1.3  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> Pam16  Pam16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   6.6e-11   5.9e-07      54     110 ..      47     104 ..       4     106 .] 0.80

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 6.6e-11
                 XX-HHHHHHHHT--G.--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHH CS
       Pam16  54 Gisleeslkilnvee.dlnreevekryehlfevndkskGGslylqskvfrakerldee 110
                  ++ +e+  il ++e  l +++v k +  ++ +n  ++GGs yl +kv  ake ld++
  CCE30990.1  47 KMTKKEASLILSLSErTLTKDKVRKAHRTIMLMNHPDRGGSPYLATKVNEAKELLDKQ 104
                 57899********9989**************************************986 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.4e-08   0.00022       5      53 ..      56     101 ..      55     105 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.4e-08
                 HHTSSTTG.-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHH CS
        DnaJ   5 iLgvskda.sedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevL 53 
                 iL +s+   ++d+++ka+r+++l+ HPD+  ++p  +    ++neA e L
  CCE30990.1  56 ILSLSERTlTKDKVRKAHRTIMLMNHPDRG-GSPYLA---TKVNEAKELL 101
                 6777766449*******************9.777333...3577777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 808.64
//
Query:       CCE30991.1  [L=155]
Description: uncharacterized protein CPUR_04842 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-12   48.5  26.8      4e-07   30.6   4.2    3.0  3  DUF3602       Protein of unknown function (DUF3602)
  ------ inclusion threshold ------
      0.017   15.3   0.1      0.027   14.7   0.1    1.3  1  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
       0.93    8.8   4.0        1.6    8.0   4.1    1.3  1  DUF4407       Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> DUF3602  Protein of unknown function (DUF3602)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   2.2   1.7e-09     1e-05      34      81 .]      11      65 ..       2      65 .. 0.65
   2 !   30.6   4.2   6.6e-11     4e-07      24      81 .]      48     108 ..      42     108 .. 0.61
   3 !   16.3   4.9   1.8e-06     0.011      15      65 ..      83     134 ..      74     149 .. 0.62

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.7e-09
     DUF3602 34 tGRGGaGNihssdrerpetrkdedvereearrkeeaeeyh..........vGRGGaGN 81
                 GRGGaGN  s + ++    +++d+er++ + +      h           GRGGaGN
  CCE30991.1 11 VGRGGAGNYYSVT-KQHALAAEKDLERQDDQAR--LVAAHppdtttaslrAGRGGAGN 65
                6********9666.5555556666666655544..223333344466666*******9 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 6.6e-11
     DUF3602  24 tdgsttsafstGRGGaGNihssdrerpetrkdedvereearrkeeaeeyh....vGRGGaGN 81 
                  +++tt+   +GRGGaGN +++ +  + + +++ +++e ++ + ++++ h     GRGGaGN
  CCE30991.1  48 PPDTTTASLRAGRGGAGNFVDAAQVPAAQEEERTLAQEVSQ-AVSTSNQHtnqmGGRGGAGN 108
                 4556677999**********877555443333333333322.2233344434458******9 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 1.8e-06
     DUF3602  15 vrtgpqgsktdgsttsafstGRGGaGNihssdrerpe..trkdedvereearr 65 
                  ++  q+ +t++++t +   GRGGaGN + +++e+    ++ +e++er+ a+ 
  CCE30991.1  83 AQEVSQAVSTSNQHT-NQMGGRGGAGNWAGEQQEEGAglQSTEEELERRVAEA 134
                 444455555555444.5679*******99777666667889999988875543 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   4.6e-06     0.027      26      93 ..      67     134 ..      46     142 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.6e-06
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  26 advdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkel 93 
                    d +++ +++e+ r+l +e+ ++ + +N+ ++++g    +++ a e  +e++ l+   ++le +++e+
    CCE30991.1  67 VDAAQVPAAQEEERTLAQEVSQAVSTSNQHTNQMGGRGGAGNWAGEQQEEGAGLQSTEEELERRVAEA 134
                   466788899****************************************************9999886 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.1   0.00027       1.6     178     241 ..      13     101 ..       4     138 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00027
     DUF4407 178 vaGkgpaakekkaqldaaqaelaelkakld.........................atarlaalraelaeleaerakeraasqaaaaadd 241
                 + G g ++   k+++ aa+++l+  +++ +                          +a+++a+++e  +l++e ++++++s++++++  
  CCE30991.1  13 RGGAGNYYSVTKQHALAAEKDLERQDDQARlvaahppdtttaslragrggagnfvDAAQVPAAQEEERTLAQEVSQAVSTSNQHTNQMG 101
                 55777777777777777777777777776677777777777777777777777777777777777777777777777777777666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1169.19
//
Query:       CCE30992.1  [L=343]
Description: related to epoxide hydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-23   81.1   0.0    2.1e-22   80.0   0.0    1.5  1  Abhydrolase_1    alpha/beta hydrolase fold
    3.6e-14   53.9   1.7    5.1e-14   53.4   1.7    1.2  1  Abhydrolase_6    Alpha/beta hydrolase family
    6.5e-08   32.1   0.0    3.1e-07   29.9   0.0    1.8  2  Hydrolase_4      Serine aminopeptidase, S33
    0.00095   18.1   0.0     0.0015   17.5   0.0    1.2  1  Chlorophyllase2  Chlorophyllase enzyme
     0.0025   16.9   0.0     0.0036   16.4   0.0    1.2  1  Chlorophyllase   Chlorophyllase
  ------ inclusion threshold ------
      0.011   15.2   0.1        0.7    9.3   0.0    2.4  2  Peptidase_S9     Prolyl oligopeptidase family
       0.11   12.6   0.0       0.22   11.6   0.0    1.4  1  Abhydrolase_4    TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   8.1e-26   2.1e-22       2     255 ..      40     317 ..      39     319 .. 0.91

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 8.1e-26
                    EEEEE-STTT.CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHH..HHHCTTSSEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpg.ssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldri..ldalgddkltlvGhSmGGmialayaaey 94 
                    ++ ++hG+p+ +++ w+    +p L   gf+v+++ + G++ +s++ +   +++++ sva+d++++  +    d++++l Gh++GG++++ +a+ +
     CCE30992.1  40 TVFLIHGWPDlNFG-WRS--QIPFLMSLGFRVVAPSMVGYAGTSRPEDL--KQWSFKSVAADIRALatKFVGEDGQIILGGHDWGGAVVWRVALWH 130
                    689*******8887.999..******99*********************..99***********88645555688888****************** PP

                    GGGEEEEEEESE..CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHH..HHHHHHCCSCHHHHHHHHHHHHHH....................... CS
  Abhydrolase_1  95 perVkalvllga..idpaaslieaqrqqaksfpdffdgyaadcarnp..agplladelaaleqrhrlvdalkf....................... 163
                    p+ +ka+ ++++  ++p++ + +++++ a++  + f+   +   + +  + +  ++ +++l+       ++ +                       
     CCE30992.1 131 PKLIKAVFSVCTpfHAPNPNWVSLEDHLAAGRLENFRYQLQLAGPDVeeGLQTEQRIHQFLNGMFGGRGPNGEygfttsggaqfdnlallgpspll 226
                    *************************************999998887722457777777777777666666666999******************** PP

                    .HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 164 .pdkskrfpssgsdnasslatgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafle 255
                     ++ ++ +  ++  ++s + +g l++  +   +++  + l    +k+v  p+l+i++t+D + pp +++ +++ +++ + + ++ a H+a+ e
     CCE30992.1 227 sREEVDYYAAQYMLQPSPPMRGPLNWYRTRRINYEEEVELAGS-FKQVEPPALFIAATKDAALPPAMSSGMEKYFKD-LTRGEVEATHWALVE 317
                    *****************************99999999999966.699******************************.************987 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   1.7     2e-17   5.1e-14       1     218 [.      41     323 ..      41     325 .. 0.55

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 2e-17
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTS.TS-GGCS--HHH......CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGh.Grsdpppldled......ladlaalldelaagggpvvlvGHSlGGalalaaapla... 86 
                    v+l+HG +    +W  +++  l + g++v+ap+  G+ G  +++p dl        +ad++al++++++ +g+++l GH++GGa++++   +a   
     CCE30992.1  41 VFLIHGWPDLNFGW-RSQIPFLMSLGFRVVAPSMVGYaG--TSRPEDLKQwsfksvAADIRALATKFVGEDGQIILGGHDWGGAVVWR---VAlwh 130
                    6899**33333336.35777788889999********99..4444444443336666888999999999*******************...77777 PP

                    .........EE.EEES-............................----TTT.........S----TTHHHHHHTT-CCCCHCCH........... CS
  Abhydrolase_6  87 .......lvvg.vlldp..........................pptalpagl.........laaalelllallallrllawlsre........... 128
                           + v+  + +p                               p+ +          +++  ++ ++++          +           
     CCE30992.1 131 pklikavFSVCtPFHAPnpnwvsledhlaagrlenfryqlqlaG----PDVEeglqteqriHQFLNGMFGGRGP----------Ngeygfttsgga 212
                    98555443333455555444433333333333333322222221....11113333322222222222222222..........022222222233 PP

                    ........S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTT............CCHHTT-TTGCEEE.CTT-CHHHHCHHCCCH.....STTEEE CS
  Abhydrolase_6 129 ........plprlfladedadaawrarlarlaallaglgllp............aaawadlpvpllvl.ggeDplvprllerlla.....qagarl 198
                             +++l+ ++e +++a +++l++ ++ + +l +++            a  ++++ +p l + +++D+++p+ +   +      +++ ++
     CCE30992.1 213 qfdnlallGPSPLLSREEVDYYAAQYMLQPSPPMRGPLNWYRtrrinyeeevelAGSFKQVEPPALFIaATKDAALPPAMSSGMEkyfkdLTRGEV 308
                    4333434433336666555688888888888888887776653433333333333366666666677757****9998766555544313333333 PP

                    TCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 199 pvvlpgaGHlphleepdeva 218
                          a H+ + e+ ++v+
     CCE30992.1 309 -----EATHWALVEATEQVN 323
                    .....399999995558886 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.2e-10   3.1e-07       2     142 ..      36     175 ..      35     194 .. 0.82
   2 ?   -0.3   0.0      0.21   5.4e+02     188     217 ..     271     303 ..     250     312 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.2e-10
  Hydrolase_4   2 epkavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGh.GrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllryp 98 
                  +p  +v+l+HG  +        +  L   Gf v+a    G+ G s ++  ++ sf+++ +D++a+ +k++   ++ +++l Gh +GG+++ +++l +p
   CCE30992.1  36 QPIDTVFLIHGWPDLNFGWRSQIPFLMSLGFRVVAPSMVGYaGTSRPEDLKQWSFKSVAADIRALATKFV--GEDGQIILGGHDWGGAVVWRVALWHP 131
                  67789999999999999999999*****************748888*******************99999..555689******************** PP

  Hydrolase_4  99 dkvaglil.saPalkikaklkappllklllkllgkllpklqvsnn 142
                  + ++++   + P+ ++++++ ++   +l++  l ++  +lq+ ++
   CCE30992.1 132 KLIKAVFSvCTPFHAPNPNW-VSLEDHLAAGRLENFRYQLQLAGP 175
                  *9996665055666666655.777778888999999998888433 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.21
  Hydrolase_4 188 akitlPllllhGeaDkvvdpeas...relyerl 217
                  ++++ P l++ +++D   +p+ s   +++++ l
   CCE30992.1 271 KQVEPPALFIAATKDAALPPAMSsgmEKYFKDL 303
                  567789***********9999996666666655 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   5.9e-07    0.0015       6     121 ..      27     137 ..      23     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.9e-07
  Chlorophyllase2   6 llvvaPteageYpvllflhGylllnslYsqlLkhiashgfivvapqlykvaeada.keiksaakvlnWlakgLesvlpeevepdlsklalsgHS 98 
                       ++  P+++     ++++hG+  ln  +++ +  + s gf vvap +   a+++  +++k+ +   + +a++++ +l+++ + +  ++ l gH 
       CCE30992.1  27 YIIGEPKNQQPIDTVFLIHGWPDLNFGWRSQIPFLMSLGFRVVAPSMVGYAGTSRpEDLKQWS--FKSVAADIR-ALATKFVGEDGQIILGGHD 117
                      5788999999999*********9999999999***************9998887767776654..455777777.7889*************** PP

  Chlorophyllase2  99 rGgktafalalgkaktslkfsal 121
                       Gg ++  +al + k    ++a+
       CCE30992.1 118 WGGAVVWRVALWHPK---LIKAV 137
                      ***********9988...44444 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.4e-06    0.0036      34     143 ..      26     132 ..       7     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.4e-06
  Chlorophyllase  34 pliivtPaeaGtypvvlflhGtllsnkfyskllnhiashGfivvaPqlykllpPsaqdeidsaaevieWlseglkavlptsveanlsklalvGhs 128
                     + ii  P+++   + v+++hG+   n  + + + ++ s Gf vvaP ++  ++ s  +++++ +   + ++ +++  l t+  ++  ++ l Gh 
      CCE30992.1  26 SYIIGEPKNQQPIDTVFLIHGWPDLNFGWRSQIPFLMSLGFRVVAPSMVGYAGTSRPEDLKQWS--FKSVAADIR-ALATKFVGEDGQIILGGHD 117
                     5678899999999****************999*********************99999998754..233344444.466777777788999**** PP

  Chlorophyllase 129 rGGktafalalgyss 143
                      GG   + +al + +
      CCE30992.1 118 WGGAVVWRVALWHPK 132
                     ******999998864 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00027       0.7       6      96 ..      57     141 ..      50     187 .. 0.88
   2 ?    3.6   0.0     0.015        39     111     170 ..     234     304 ..     225     334 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00027
                   HHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEES CS
  Peptidase_S9   6 elqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaev 96 
                   ++ +l ++G+ vv++ + G +g ++       ++l+q++f+ + a ++ala++++ +  ++++ G+  GG ++  ++  +p+l ka+ +++
    CCE30992.1  57 QIPFLMSLGFRVVAPSMVGYAGTSR------PEDLKQWSFKSVAADIRALATKFVGEDGQIILGGHDWGGAVVWRVALWHPKLIKAVFSVC 141
                   5666778999999999999887776......4799***************************************99999****99998875 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.015
                   THHHCCCC--TTT..CHHHHHHHHHH-CGGG--.......---EEEEEEETT-SSS-THHH...HHHHHHHH CS
  Peptidase_S9 111 lteeymewgnpee..neegykelspyspldnvk.......aypplLlihGlaDdrvppaea...lklvaaLq 170
                   ++++ym ++ p      + y +   +++ ++v+       ++pp L+i +++D   ppa +   +k+++ L+
    CCE30992.1 234 YAAQYMLQPSPPMrgPLNWY-RTRRINYEEEVElagsfkqVEPPALFIAATKDAALPPAMSsgmEKYFKDLT 304
                   55577777776654222222.33344444444456777889****************976611135555554 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.7e-05      0.22      30      89 ..     270     328 ..     252     335 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.7e-05
  Abhydrolase_4  30 takgaapvLllqnerDpaTPyegakklakalggavlvtvege.GHgalaagntCvdkavda 89 
                     +++++p+L+++++ D+a P+++ + + k++++  l   e e +H al +  + v++ + +
     CCE30992.1 270 FKQVEPPALFIAATKDAALPPAMSSGMEKYFKD--LTRGEVEaTHWALVEATEQVNNQIVE 328
                    34568*************************996..22222222555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2597.49
//
Query:       CCE30993.1  [L=121]
Description: uncharacterized protein CPUR_04844 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-23   80.6  11.2    1.6e-22   79.9  11.2    1.3  1  Cript           Microtubule-associated protein CRIPT
     0.0054   17.0   7.8     0.0054   17.0   7.8    2.0  2  DUF2039         Uncharacterized conserved protein (DUF2039)
  ------ inclusion threshold ------
       0.27   11.3  16.2       0.23   11.5  10.2    2.7  2  DZR             Double zinc ribbon
          2    8.3  12.8        6.4    6.7   9.1    2.7  3  zf-C3HC4_3      Zinc finger, C3HC4 type (RING finger)
        3.2    8.6  13.6        2.5    8.9   8.3    2.7  2  zinc_ribbon_15  zinc-ribbon family
        5.6    7.0  13.0         24    5.0  10.1    2.8  3  zf-RING_5       zinc-RING finger domain


Domain annotation for each model (and alignments):
>> Cript  Microtubule-associated protein CRIPT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9  11.2   5.4e-26   1.6e-22       1      83 [.      12     106 ..      12     110 .. 0.87

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 5.4e-26
       Cript   1 tklatp......dkyk...........kkasntlgetggrkigenkllskkkrfnpyaaysskCkiCktkveqkgakYCqkCaYkkgiCamCGkklldt 82 
                 t+latp      ++y+            ++s+tlg++g   + ++kllsk+   npya+yss+C +Cktkv+q g++ Cq+CaYk++ C+mCGk + +t
  CCE30993.1  12 TTLATPdvkkksEMYYgspagsstkasGSKSATLGQNG---VIKSKLLSKS-AKNPYAQYSSSCAKCKTKVSQ-GHSLCQTCAYKNNSCSMCGKPNKKT 105
                 789***7777777777***9999988766678888888...*******999.36*******************.********************99766 PP

       Cript  83 k 83 
                  
  CCE30993.1 106 A 106
                 5 PP

>> DUF2039  Uncharacterized conserved protein (DUF2039)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.3      0.45   1.3e+03      82      88 ..       2       8 ..       1      13 [. 0.66
   2 !   17.0   7.8   1.8e-06    0.0054      52      88 ..      66     100 ..      49     101 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.45
     DUF2039 82 vCakCsk 88
                vC kC+k
  CCE30993.1  2 VCGKCQK 8 
                4666654 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.8e-06
     DUF2039  52 tkkkkCvkCeektvkkaYhkiCkkCakekkvCakCsk 88 
                 + ++ C+kC+  +v++  h++C++Ca +++ C+ C+k
  CCE30993.1  66 QYSSSCAKCKT-KVSQ-GHSLCQTCAYKNNSCSMCGK 100
                 56789****54.4655.599***************98 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  10.1   0.00062       1.9      27      48 ..      24      88 ..       1      89 [. 0.65
   2 ?   11.5  10.2   7.8e-05      0.23       1      43 [.      71     107 ..      71     111 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00062
         DZR 27 a...........................................edrCpsCgekvdpearfCpeC 48
                +                                           +  C +C++kv+++++ C+ C
  CCE30993.1 24 EmyygspagsstkasgsksatlgqngvikskllsksaknpyaqySSSCAKCKTKVSQGHSLCQTC 88
                05555555555555555555566666666666666666777778999*****************9 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.8e-05
         DZR   1 CpqCgeelppdarfCseCgtklkavaaedrCpsCgekvdpear 43 
                 C++C+++++++   C++C  k +       C+ Cg++++++a+
  CCE30993.1  71 CAKCKTKVSQGHSLCQTCAYKNN------SCSMCGKPNKKTAA 107
                 9*****************99985......9*******998876 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.34     1e+03      25      31 ..       2       8 ..       1      17 [. 0.50
   2 ?    2.7   0.3     0.039   1.2e+02      37      48 ..      68      79 ..      60      81 .. 0.74
   3 ?    6.7   9.1    0.0022       6.4      21      49 ..      81     104 ..      66     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.34
                E-HHHHH CS
  zf-C3HC4_3 25 lCeeCae 31
                +C +C +
  CCE30993.1  2 VCGKCQK 8 
                4444433 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.039
                T-B-TTT--B-- CS
  zf-C3HC4_3 37 kkkCpiCrrpie 48
                + +C  C+++++
  CCE30993.1 68 SSSCAKCKTKVS 79
                567888888876 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0022
                 EEEEE-HHHHHHHHHTT-B-TTT--B--E CS
  zf-C3HC4_3  21 gHlvlCeeCaekllkrkkkCpiCrrpiek 49 
                 gH  lC++Ca k     ++C +C +p +k
  CCE30993.1  81 GHS-LCQTCAYKN----NSCSMCGKPNKK 104
                 899.*********....******999765 PP

>> zinc_ribbon_15  zinc-ribbon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   8.3   0.00083       2.5      40      85 ..       3      88 ..       1      89 [. 0.63
   2 ?    0.2   0.2      0.45   1.3e+03      67      73 ..      94     100 ..      90     109 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00083
  zinc_ribbon_15 40 cskCkslleaskelgkeiekkesse.........................................kkeCknCgkeveeefkyCpkC 85
                    c kC++l ++    +++++kk+++                                          + +C++C+++v++  + C  C
      CCE30993.1  3 CGKCQKLSKTTL-ATPDVKKKSEMYygspagsstkasgsksatlgqngvikskllsksaknpyaqySSSCAKCKTKVSQGHSLCQTC 88
                    555555555554.233333332222455555555555666666666666666777777777788889******************** PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.45
  zinc_ribbon_15  67 eCknCgk 73 
                     +C+ Cgk
      CCE30993.1  94 SCSMCGK 100
                     4555544 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.18   5.2e+02       2       7 ..       3       8 ..       1      26 [. 0.71
   2 ?   -0.9   0.3      0.54   1.6e+03      38      43 ..      70      75 ..      63      76 .. 0.66
   3 ?    5.0  10.1    0.0079        24      21      44 .]      81     100 ..      70     100 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.18
   zf-RING_5 2 CnkCfe 7
               C kC +
  CCE30993.1 3 CGKCQK 8
               555544 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.54
   zf-RING_5 38 vCpiCr 43
                 C  C+
  CCE30993.1 70 SCAKCK 75
                455554 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0079
   zf-RING_5  21 gHifCekClkkllekeavCpiCrk 44 
                 gH++C++C+ k+      C++C+k
  CCE30993.1  81 GHSLCQTCAYKNN----SCSMCGK 100
                 8************....*****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1068  (0.0595683); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 956.45
//
Query:       CCE30994.1  [L=1360]
Description: probable P-type amino-phospholipid-ATPase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-82  276.8  21.8    1.9e-82  276.8  21.8    2.1  2  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
    3.3e-28   97.2   4.6    9.1e-28   95.8   4.6    1.8  1  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    3.3e-11   43.1   0.0    2.9e-10   40.1   0.0    2.2  2  Cation_ATPase    Cation transport ATPase (P-type)
    3.6e-11   43.7   3.1    2.7e-06   27.8   0.7    3.3  2  Hydrolase        haloacid dehalogenase-like hydrolase
    1.3e-06   28.0   0.0    2.8e-06   27.0   0.0    1.6  1  E1-E2_ATPase     E1-E2 ATPase
     0.0018   18.1   0.3     0.0072   16.1   0.1    1.8  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.065   12.9   0.1       0.15   11.6   0.1    1.6  1  Mt_ATP-synt_B    Mitochondrial ATP synthase B chain precursor
        1.2    9.1   5.6         13    5.8   1.0    2.5  2  DUF2474          Protein of unknown function (DUF2474)


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.8       0.4     9e+02     178     233 ..     495     562 ..     464     575 .. 0.55
   2 !  276.8  21.8   8.3e-86   1.9e-82       1     248 [.    1030    1281 ..    1030    1282 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.4
  PhoLip_ATPase_C 178 liliililgsillyflfl...llyssllps.........ssefygvleelfsspsfwlvlllvvvval 233
                      +++++l+ + ++l ++++   l++ s+  +          ++  +v++++++++ +++vl+ ++v + 
       CCE30994.1 495 WLVLMLVGMLLALSVICTvgdLIMRSVHGNsfdylyldkVNSAGQVARTFVRDMVTYWVLFSSLVPIS 562
                      33333333333333333333423333322244456666644444467788888666666444443332 PP

  == domain 2  score: 276.8 bits;  conditional E-value: 8.3e-86
  PhoLip_ATPase_C    1 vraSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsae 92  
                       +r++D aiaqFr+L++LLlvhG wsy+R+sk+il++fyKn++++l+qfwf f n fsgq +yesw+l++yn+++t+lp++vlgi+dq +sa+
       CCE30994.1 1030 ARSADVAIAQFRYLRKLLLVHGAWSYQRVSKTILFSFYKNMTLYLTQFWFTFQNVFSGQVIYESWTLSFYNVFYTVLPPLVLGILDQFISAR 1121
                       69****************************************************************************************** PP

  PhoLip_ATPase_C   93 lllkyPelYklgqknklfnlktfllwileglyqsliifflsylvlddssfs.dgktndlqlfgtlvftalvlvvnlkvaletktwtliliil 183 
                       ll +yP+lY+ gq+n +f+lktf +wi++++y+sli+++++ l+++   ++ dgk ++++ +gt+ + a++l+v+ k al t++wt +++++
       CCE30994.1 1122 LLDRYPQLYTMGQSNYFFKLKTFAQWIANAFYHSLILYVFASLIWHGDLIQgDGKVAGHWVWGTALYGAVLLTVLGKAALVTNNWTKYHVLA 1213
                       ********************************************99999999**************************************** PP

  PhoLip_ATPase_C  184 ilgsillyflflllyssllps...ssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtffp 248 
                       i gs++++++f+++y s+ p    s+e+ gv+++l++sp fwl ++++ v++l++d+++k+ kr+++p
       CCE30994.1 1214 IPGSMAIWYVFIAAYGSVAPRfhfSMEYAGVVARLYTSPVFWLQTVVLAVLCLMRDVAWKYAKRMYRP 1281
                       *****************99999999*****************************************99 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   4.6     4e-31   9.1e-28       1      67 []     232     298 ..     232     298 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 4e-31
  PhoLip_ATPase_N   1 vyindreenekkkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqisplspvtti 67 
                      +++n++ +n+++ky++N+IsT+KY++++Flpk+LfeqF+++aN++FL++a+lq+iP++sp++++tti
       CCE30994.1 232 IHLNNPPANAANKYVDNHISTAKYNVASFLPKFLFEQFSKFANIFFLFTACLQQIPGLSPTNRYTTI 298
                      799**999**99*****************************************************97 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.3e-13   2.9e-10       3      88 ..     684     780 ..     679     782 .. 0.88
   2 ?   -0.5   0.0      0.59   1.3e+03      11      29 ..     875     893 ..     869     925 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.3e-13
  Cation_ATPase   3 cNsaafsensekdevkllGnktEsALlvlaekl............gldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilk 86 
                    c+    + n++ + +    +++E AL++ a +l             +++   + e++ +++ +Fns+rKrms +++  p++k+r+y+KGA  +il+
     CCE30994.1 684 CHTVIPEVNEKGHIKYQAASPDEGALVQGALDLgyrftarkprsvIIEVGGRQLEYELLAVCEFNSTRKRMSAIYRC-PDGKLRIYCKGADTVILE 778
                    5555556778888888899**************9999988888888888888888*********************9.8****************9 PP

  Cation_ATPase  87 rC 88 
                    r 
     CCE30994.1 779 RL 780
                    85 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.59
  Cation_ATPase  11 nsekdevkllGnktEsALl 29 
                    +++ +++ l+G+  E+A+ 
     CCE30994.1 875 QANIKVWVLTGDRQETAIN 893
                    678899***********86 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.7   1.2e-09   2.7e-06       4     149 ..     610     892 ..     607     933 .. 0.70
   2 !   12.8   0.1   4.8e-05      0.11     175     209 ..     979    1015 ..     954    1016 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.2e-09
                 EEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH.HHHHHHHHHETTTE.........HHHHTHHHHHHHH...HCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.........xxxxxxxxxxxxx...xxxxxxxxx RF
   Hydrolase   4 vvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar.sgaltgfatfigrg.........ayaigkpewltal...dippdlgaa 89 
                 v+ Dk+GTLt  +++ ++++                  ++ a+ +   a  + + +g++tf             a+ai     l a             
  CCE30994.1 610 VFSDKTGTLTCNQMEFKQCTIAG-------------LQYADAIPEDRRAAgPDDDQGIHTFDKLRsnlaeghesAVAIDHFLALLATchtV-------- 687
                 78899999999999999988888.............2222333222222232222333333222233344443333333222222223332........ PP

                 HHHHHHHCHHHHHH..................................................................................... CS
                 xxxxxxxxxxxxxx..................................................................................... RF
   Hydrolase  90 igsaqsqgrtvall..................................................................................... 103
                 i + +++g++ +                                                                                       
  CCE30994.1 688 IPEVNEKGHIKYQAaspdegalvqgaldlgyrftarkprsviievggrqleyellavcefnstrkrmsaiyrcpdgklriyckgadtvilerlndqnph 786
                 222222222222222222222234555555555555666666667777777777788888888888888888888888888888888888888888888 PP

                 ..............................................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEE CS
                 ..............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 ..............................................................qaralavftiadplkvkpeaaeavasLkaagievvll 140
                                                                               +  +l+  +i+d   + +++ e++++L++a+i+v++l
  CCE30994.1 787 veatlrhleeyaseglrtlclamreiseqeyaewykihdaaattvggtradeldkaaeiiehDFFLLGATAIEDR--LQDGVPETIHTLQQANIKVWVL 883
                 8888888888888888889999999999999999999999999999999999999999998899***********..********************** PP

                 ESSEHHHHH CS
                 xxxxxxxxx RF
   Hydrolase 141 tgdnpetae 149
                 tgd +eta 
  CCE30994.1 884 TGDRQETAI 892
                 ******995 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.8e-05
                  SHHHHHHHHHHHT..STGGGEEEEESSHHHHHHHHHT CS
                  xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  175 spegkvaaireLq..gkpeevamVGDgvnDaaalaaA 209 
                  sp +k  +++  +   k +  +++GDg+nD+++++aA
  CCE30994.1  979 SPLQKALVVKLVKkyQKQSILLAIGDGANDVSMIQAA 1015
                  55555555555544455666***************99 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.2e-09   2.8e-06       2     139 ..     326     517 ..     325     570 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.2e-09
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.....EEE-TTTS---S-EE-............................. CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa.....evdesaLTGEslpvek............................. 64 
                   l+ ++a+v+r+ + +e +  ++ +GDi+ +++++  paD +++ +s+      ++++ L GE     k                             
    CCE30994.1 326 LNTSRARVLRGSSFTETKWINVGVGDIIRVESEEPFPADLVLLASSEpeglcYIETANLDGETNLKIKqglpetvsmvssselsrlggrvkseqpns 422
                   67789**************************************9777766779******************************************** PP

                   ......................G-TTEE-TT-EEEE-E.EEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-S CS
  E1-E2_ATPase  65 ......................ekgdmvfsGtvvvsge.akavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflial 138
                                         + ++ +  G++  + + +++vV+ tg +t+l + a+++     k+t+++kkl+ l+ +lv + l++++++ +  l
    CCE30994.1 423 slytyeatltmqagggekelalNPEQLLLRGATLRNTPwIHGVVVFTGHETKLMRNATATP---IKRTKVEKKLNWLVLMLVGMLLALSVICTVGDL 516
                   *********************99***********9976489**********9877666554...569999999999999998888888888776544 PP

                   T CS
  E1-E2_ATPase 139 l 139
                   +
    CCE30994.1 517 I 517
                   4 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.95   2.1e+03      17      47 ..     863     893 ..     859     911 .. 0.80
   2 !   16.1   0.1   3.2e-06    0.0072     202     227 ..     995    1020 ..     955    1025 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.95
                  -HHHHHHHHHHHHTTSEEEEE-SS-HHHHHH CS
  Hydrolase_3  17 sektkeaikklkekgikvviATGRslravlp 47 
                  ++   e+i+ l++++ikv + TG   +++++
   CCE30994.1 863 QDGVPETIHTLQQANIKVWVLTGDRQETAIN 893
                  5666789999********9999977666665 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 3.2e-06
                   -GGGEEEEESSGGGHHHHHHSSEEEE CS
  Hydrolase_3  202 sleeviafGDgeNDieMLeaaglgvA 227 
                   +++  +a+GDg ND++M++aa +gv 
   CCE30994.1  995 KQSILLAIGDGANDVSMIQAAHIGVG 1020
                   456689****************9995 PP

>> Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.8e-05      0.15      16     101 ..    1257    1342 ..    1253    1353 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.8e-05
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHH CS
  Mt_ATP-synt_B   16 Etlvalcfigflilvakslgpsikefldkriekiqeelnqsrnlkeealkerieqekklqslveltkslfevskeqvaleaeafer 101 
                     +t+v++ + ++  +++k+++ ++    +  i++iq+   q +++ +e+ +++i ++++ q + + +   f    e+  ++++a+  
     CCE30994.1 1257 QTVVLAVLCLMRDVAWKYAKRMYRPQTYHHIQEIQKYNIQDYRPRMEQFQKAIRKVRQVQRMRKQRGYAFSQADESQTRVLQAYDT 1342
                     7999********************************************************99999988888888877777777665 PP

>> DUF2474  Protein of unknown function (DUF2474)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   1.0    0.0056        13       4      34 ..     490     520 ..     487     521 .. 0.89
   2 ?    5.0   0.2      0.01        23      12      36 ..    1219    1243 ..    1218    1245 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0056
     DUF2474   4 wkRlgWLvlIWaaSVlaLgvvAlllRllMta 34 
                  k+l WLvl   +  laL v+ ++  l+M++
  CCE30994.1 490 EKKLNWLVLMLVGMLLALSVICTVGDLIMRS 520
                 599******************9998888875 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.01
     DUF2474   12 lIWaaSVlaLgvvAlllRllMtaAG 36  
                  +IW + ++a g vA  +++ M+ AG
  CCE30994.1 1219 AIWYVFIAAYGSVAPRFHFSMEYAG 1243
                  7***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.93u 0.24s 00:00:01.17 Elapsed: 00:00:00.42
# Mc/sec: 9712.51
//
Query:       CCE30995.1  [L=237]
Description: uncharacterized protein CPUR_04846 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-21   76.5  22.8    5.3e-21   76.5  22.8    2.0  2  Ecl1      ECL1/2/3 zinc binding proteins
  ------ inclusion threshold ------
       0.58   10.3   3.8        1.3    9.2   3.8    1.6  1  zf-MYND   MYND finger
        1.7    8.8   6.9         39    4.5   6.9    2.3  1  DUF2256   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> Ecl1  ECL1/2/3 zinc binding proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6  12.7      0.43   2.6e+03      88     131 ..      21      51 ..       1      69 [. 0.28
   2 !   76.5  22.8   8.9e-25   5.3e-21       2     173 ..      71     232 ..      70     233 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.43
        Ecl1  88 tewksrpasppspssssswnylstfpstsrsssssssesttsss 131
                 ++++       s +sss+    s+ pst+r+++ s   s+t+ss
  CCE30995.1  21 RKST------ASSDSSSK----SKRPSTTRRHTPS---SATKSS 51 
                 1111......11111111....1222222222222...111111 PP

  == domain 2  score: 76.5 bits;  conditional E-value: 8.9e-25
        Ecl1   2 asflqfCamCEkqivpsnsiLYCSEaCRrkDsekslssssssssspplsprsssapseprd...savpsrpsfsripsdssdsksdldptewksrpasp 97 
                 + f+qfCa+CE q++  ++ LYCS++CR+ D++    s + ++s +  s+++s+ ++ep d   +a+psrp  s+++ +s  +++++ p++++ +  sp
  CCE30995.1  71 EFFPQFCAVCETQFSSPKRNLYCSDKCRQLDANAVP-SRPRKFSVTEQSSYYSTLHTEPPDivrRASPSRP-LSSTRRPSPPRHPSDWPSYSRGAAISP 167
                 88************777889***********55443.333344444788888899999999999*******.666666666777777777777667788 PP

        Ecl1  98 pspssssswnylstfpstsrsssssssesttsssstsssssssasssssessdrpLpprpsysssssr.tksidlvt 173
                 ++ps++s      t++s+++ ++ +   s +++s++++  +s+++++s+   drp ppr+s   +s++ +ks+dl t
  CCE30995.1 168 SAPSRQSG-----TYRSSAYDTHDT---SYQYTSGDTTYDTSTYDTGST-GLDRPAPPRQS---GSGSkSKSVDLLT 232
                 88888888.....667777777777...344444444444444444444.55***999887...555559*****88 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.8   0.00022       1.3      12      30 ..      76     101 ..      64     104 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00022
                 E-TTT.......S-SEESSHHHHHHC CS
     zf-MYND  12 kCagC.......ksvfYCskeCqrad 30 
                  Ca C       k+  YCs +C++ d
  CCE30995.1  76 FCAVCetqfsspKRNLYCSDKCRQLD 101
                 699997777777888*******9988 PP

>> DUF2256  Uncharacterized protein conserved in bacteria (DUF2256)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   6.9    0.0065        39       9      39 ..      76      99 ..      70     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0065
     DUF2256  9 iCavCgrpftwRkkWekdWdeVkyCSerCrr 39
                 CavC+ +f+  k+         yCS++Cr+
  CCE30995.1 76 FCAVCETQFSSPKRN-------LYCSDKCRQ 99
                688888888887763.......7******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1276  (0.0711696); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 1728.76
//
Query:       CCE30996.1  [L=271]
Description: uncharacterized protein CPUR_04847 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-56  190.3  15.9    2.9e-56  190.3  15.9    1.9  2  SYF2        SYF2 splicing factor


Domain annotation for each model (and alignments):
>> SYF2  SYF2 splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.0     0.083   1.5e+03       6      47 ..      27      55 ..      15      82 .. 0.46
   2 !  190.3  15.9   1.6e-60   2.9e-56       1     159 []      83     261 ..      83     261 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.083
        SYF2  6 lerkkalewsaeeaekwekkkkkkeknedagfsdyedaayrk 47
                + r kal++ a+ +   + k++ k             +++r 
  CCE30996.1 27 MARFKALQARAKSSSDSNLKEATK-------------ESQRL 55
                334444444444444444444444.............22222 PP

  == domain 2  score: 190.3 bits;  conditional E-value: 1.6e-60
        SYF2   1 ekgedlerkkalewsaeeaekwekkkkkk.eknedagfsdyedaayrkYkkqlkelkpdleaYekqkekaleka................savsk.eaf 81 
                 e+ged+erk+a++w+++e+ekw+k+kkkk ++++++ f d ++++++ Yk+qlk++ pd+e Yekqk++a eka                +av++ ++f
  CCE30996.1  83 ESGEDFERKRAWDWTIDESEKWDKRKKKKaTHRDNNVFRDPQQESNKIYKRQLKNIAPDMEGYEKQKAAAIEKAaasggldivetedgelIAVDRdGSF 181
                 689**************************99999999***********************************99****************8899899** PP

        SYF2  82 yrtantlsladhkpseeavdrlveklekqeekrkkfsrrrked..eegdvtYINerNkkFNkklerfYdkytaeIrenLE 159
                 y+ta+t+++a++kp+++ vdrlv++l+++ee+r k++++r+ +  ++gdvtYINe+Nk+FN+kl+rfYdkyta+Ir+++E
  CCE30996.1 182 YSTADTTTFAQNKPDKASVDRLVADLRRAEEQRLKKRKERMAKngDDGDVTYINEKNKQFNQKLARFYDKYTADIRDSFE 261
                 ****************************************99989**********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1633  (0.0910815); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2084.68
//
Query:       CCE30997.1  [L=291]
Description: uncharacterized protein CPUR_04848 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-06   27.2   0.0    3.1e-06   26.8   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0004   20.3   0.0     0.0035   17.2   0.0    2.4  1  NAD_binding_10  NAD(P)H-binding
     0.0021   17.1   0.0     0.0046   16.0   0.0    1.5  2  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
  ------ inclusion threshold ------
      0.058   12.5   0.0       0.54    9.3   0.0    2.2  3  RmlD_sub_bind   RmlD substrate binding domain
      0.076   12.4   0.0        0.1   12.0   0.0    1.2  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   8.6e-10   3.1e-06       2      71 ..      10      86 ..       9     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 8.6e-10
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC............EEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl............elveldltdrsalerlfkeeqpdavihl 71
                +V G++Gf+Gs ++k+  +kg++v+ ++r   +++++    +            ++ ++d+++++   +++k  ++++v+h 
  CCE30997.1 10 VVCGGSGFLGSRICKYAVAKGWDVTSISRS--GEPQWDTV-TssplppswahrvTWERADILQPATYSAFLK--GANYVVHS 86
                799***************************..33333333.34789**************************..9*****97 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   9.8e-07    0.0035       1     148 [.      13     212 ..      13     267 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 9.8e-07
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHH.HCHHHHCTT.......TCEEEE--TT-CCHHHHHHTT-SEEEES-................... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpe.klaeleaee.......glevvegdvtdvedlaealkgadaVvsal................... 68 
                     G++G  G++++k ++a+ g++vt + R+ e + + + +++       +++   +d++++++  + lkga+ Vv ++                   
      CCE30997.1  13 GGSGFLGSRICKYAVAK-GWDVTSISRSGEpQWDTVTSSPlppswahRVTWERADILQPATYSAFLKGANYVVHSMgilieadykgivsgkespi 106
                     9****************.5********955233433322233333349**********************9998885666666665553333333 PP

                     ....--TCCHHHH......................................HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHH CS
  NAD_binding_10  69 ....ggggkdeeg......................................aknivdaakeagvkRfvlvsaigvgdevpgefgewnkellkayl 121
                                 +                                      a+++++ a +++ + f ++sa g       +       +  +y+
      CCE30997.1 107 aglqK-------MfstvrergtnpldkqtgddikpadptdqfsyevmnrdsAVALAKHAAAEKASAFCYISACGGA-----P------IMPPRYI 183
                     22220.......0222222233333333455555566666666666666666666666666666666666666633.....1......2344566 PP

                     HHHHHHHHHHHH..SSSEEEEEEE-CEE- CS
  NAD_binding_10 122 aakraaeellra..sgldwTivrpggLtd 148
                       kr+ae  +++   ++  +++rp++L d
      CCE30997.1 184 TTKRQAEIAIQNnfPEMRGVFMRPPFLYD 212
                     66666666666633366666666666666 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.3e-06    0.0046       1      76 [.      10      89 ..      10     120 .. 0.80
   2 ?   -3.0   0.0      0.78   2.8e+03     146     183 ..     182     212 ..     179     233 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.3e-06
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk.......viegDvtdkdkleealegvdvvihlasl 76
                vv Gg+GFlG++++k  v  +  ++v ++    +p++ ++++++              +D+++ ++ ++ l+g++ v+h  ++
  CCE30997.1 10 VVCGGSGFLGSRICKYAVAKG--WDVTSISRSGEPQW-DTVTSSPLPPswahrvtWERADILQPATYSAFLKGANYVVHSMGI 89
                79****************999..89999998888888.444443322223333447899****************99998776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.78
   3Beta_HSD 146 ypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyG 183
                 y ++K++aE ++   N+       ++  + +Rp  +y 
  CCE30997.1 182 YITTKRQAEIAIQ--NN-----FPEMRGVFMRPPFLYD 212
                 6677888886664..33.....2255566667766665 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00015      0.54       2      38 ..       8      47 ..       7      86 .. 0.77
   2 ?   -3.6   0.1       1.3   4.7e+03      77     100 ..     146     170 ..     141     171 .. 0.65
   3 ?    0.5   0.0     0.075   2.7e+02     125     165 ..     182     223 ..     178     270 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00015
                   EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...T--TT CS
  RmlD_sub_bind  2 kilvtGanGqlGseLakqlaeeglevlaltre...eldlt 38
                   k++v G++G lGs + k + ++g++v++++r+   ++d  
     CCE30997.1  8 KLVVCGGSGFLGSRICKYAVAKGWDVTSISRSgepQWDTV 47
                   799**************************99988855543 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.3
                    HHTHHHHHHHHHHHHCT-.EEEEEE CS
  RmlD_sub_bind  77 vnaeavealAeaaaavga.lLihvS 100
                    +n +++ alA+ aaa +a  + ++S
     CCE30997.1 146 MNRDSAVALAKHAAAEKAsAFCYIS 170
                    5778888888776655441566666 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.075
                    HHHHHHHHHHHHHHH-S..SEEEEEE-SEESSSSS-HHHHHHH CS
  RmlD_sub_bind 125 YGrtKlaGEqavlaagk..kalivRtswvygekgknfvktmlr 165
                    Y  tK + E a++++ +  + + +R + +y+++ + f   m  
     CCE30997.1 182 YITTKRQAEIAIQNNFPemRGVFMRPPFLYDSS-RRFTMGMAA 223
                    67899999*****99883355889999999884.445555554 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.9e-05       0.1       2      35 ..      11      43 ..      10      84 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.9e-05
                   EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-T CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlekgyevhgivrrsssfn 35
                   + G++Gf Gs ++++ ++kg +v+ i r   + +
     CCE30997.1 11 VCGGSGFLGSRICKYAVAKGWDVTSISRS-GEPQ 43
                   89*********************998764.3334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2224.33
//
Query:       CCE30998.1  [L=278]
Description: related to human AF-9 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-29   99.6   0.2    1.2e-28   98.9   0.2    1.4  1  YEATS     YEATS family
  ------ inclusion threshold ------
       0.31   11.2   1.3        2.5    8.3   0.1    2.5  3  DUF4279   Domain of unknown function (DUF4279)
       0.45   10.5   3.4       0.79    9.7   3.4    1.3  1  TnpV      Transposon-encoded protein TnpV


Domain annotation for each model (and alignments):
>> YEATS  YEATS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.2     2e-32   1.2e-28       1      79 [.      44     126 ..      44     128 .. 0.96

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 2e-32
       YEATS   1 thkWtvavrsaasddlsefikkVqFkLhetyanptrvvekp...PFevtetGwGeFeiqikiffkpea.ekpltlehdLklhp 79 
                 th+W+v+v+++++ d+++++++VqFkLhe+ +n +r++e +   PF+v+etGwGeF+i+ik+++++++ ekp+t++h+L+lhp
  CCE30998.1  44 THSWEVFVKGLEDVDITYWVRRVQFKLHESIPNYVRMIEGEpgkPFTVRETGWGEFDITIKLYYVNDSgEKPQTIYHYLRLHP 126
                 8**********99**************************655669*************************************8 PP

>> DUF4279  Domain of unknown function (DUF4279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.063   3.8e+02      31      52 ..      38      59 ..      22     126 .. 0.59
   2 ?   -3.3   0.0       1.7   9.9e+03      37      47 ..     144     154 ..     128     163 .. 0.74
   3 ?    8.3   0.1   0.00042       2.5      42      79 ..     233     270 ..     214     275 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.063
     DUF4279 31 ptkkrkegsWelstgleesldl 52
                +t+ + ++sWe+ ++  e+ d+
  CCE30998.1 38 GTPDNHTHSWEVFVKGLEDVDI 59
                3388999999987444444444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.7
     DUF4279  37 egsWelstgle 47 
                 + sW+++++l 
  CCE30998.1 144 VRSWSYEEQLF 154
                 56888886665 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00042
     DUF4279  42 lstgleesldleeqldklldrlepkaekikelakkygl 79 
                 ++  +e+ +  e++ +++l++l+ k+e++++l+ +  +
  CCE30998.1 233 VKRLKEAQEKTEDMCKRILSELKAKEEQLAKLKAENQA 270
                 5555667999**********************997655 PP

>> TnpV  Transposon-encoded protein TnpV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.4   0.00013      0.79      54      94 ..     234     274 ..     229     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00013
        TnpV  54 ehlaeideqaeerlerlvkqlaekegvteelkakdqmewvq 94 
                 ++l+e +e++e++++r++++l+ ke+   +lka++q + v 
  CCE30998.1 234 KRLKEAQEKTEDMCKRILSELKAKEEQLAKLKAENQAAAVA 274
                 6799********************999999******99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1209  (0.0674327); expected 358.6 (0.02)
Passed bias filter:                      755  (0.0421105); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2158.86
//
Query:       CCE30999.1  [L=556]
Description: uncharacterized protein CPUR_04850 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.2   11.5   0.5       0.42   10.4   0.5    1.4  1  KdpC      K+-transporting ATPase, c chain


Domain annotation for each model (and alignments):
>> KdpC  K+-transporting ATPase, c chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   2.3e-05      0.42      57     121 ..     331     396 ..     319     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2.3e-05
                 --SSS--------ST-TTT-------SS-HH.HHHHHHHHHHHHHHH-TTS..-SB-HHHHS-BSS CS
        KdpC  57 tsdkYfhgRpsavnynaaasggsnlgpsnpe.llerveervaalraenpekkkeevPadlvtaSgS 121
                 t++ Yf +Rp  v+ n a+s+ s  +p +++   ++ ++rv +lr++++e  +++vP++ v + +S
  CCE30999.1 331 TAHGYFPSRPTLVSLNSAVSSISHNAPGHRSrTGRKKKTRVVNLRKTKSEMGSSAVPSEDVSETAS 396
                 4678**********8888887777777666505566778899999999999999****99988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4163.13
//
Query:       CCE31000.1  [L=493]
Description: uncharacterized protein CPUR_04851 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-32  113.9   0.1    2.7e-26   92.8   0.0    2.1  2  Ins_P5_2-kin  Inositol-pentakisphosphate 2-kinase


Domain annotation for each model (and alignments):
>> Ins_P5_2-kin  Inositol-pentakisphosphate 2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0   1.5e-30   2.7e-26       2     182 ..      98     275 ..      98     292 .. 0.85
   2 !   19.2   0.1   3.8e-08   0.00068     274     330 ..     326     383 ..     285     385 .. 0.71

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 1.5e-30
                   EEE-SSEEEEEE-SS-TTTTTE.....EEEEEEEESTSHHHHT-SSHHHHHHHHHHHTTHHHHTSTSB---EEEEE.-HHHHHHHHHHHGGGS-HHH CS
  Ins_P5_2-kin   2 lgEGaaniVfsytgsspsalgk.....vLRlrKapksekdseskaeseeeslsfvrkvispllgseylvdqelvrl.drefleelnekleaerpaaR 92 
                   +gEGaan Vf+++ ++ +++g+     +LR+ K p       + +++   ++++ +  i+p+lg++ +++ elv l ++++++eln+ l+  + + R
    CCE31000.1  98 VGEGAANAVFELKYPPLDRAGRdlqgfLLRVAKVPS---LGAPLTYDYHLQQQYLQTAIKPILGEHAVHQ-ELVMLhKTNIVQELNNLLRDINHT-R 189
                   69***********988888887999***********...77888888889999***********777766.666653889***********9876.5 PP

                   HHHE..EE-TT-SEEEEEE-TTSSSSSTS-EEEEEE-----S..---STTS-GGGGGGGTS-HHHHHHHHH....HHTTSSSS--S--HHHHTSS- CS
  Ins_P5_2-kin  93 rrka..evdvakecallleDltllpgsksktitvEiKPKwGflqspsaplsaetkeikkrvcrfcahqalk....lkegkieeiskycPldLfsgd 182
                   r+k   +   ++e+++l+eD+ ++  +  ++i vE+KPKw + qspsap++a        +cr ca+++      l+ +k +   k cPl L+s d
    CCE31000.1 190 RDKFkgTYVGESEWGFLIEDMRPQALD--TCILVEFKPKW-LSQSPSAPKDA-------IRCRQCAMELRNlikdLSINKTHPERKPCPLALMSPD 275
                   5554454444567*********99995..8**********.9*******999.......9*******998887787777777799*******9987 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 3.8e-08
                   H............HHHHHHHH-EEEEEESS--SEEEEETTTTEEEEEEEEEE------TT.HHHHHHHHH CS
  Ins_P5_2-kin 274 y............llaatlkDCSimirlsssaesrelsqsrgrafsyevkviDLDpKsak.klekwvkld 330
                                 la+tl+DC+++ ++            ++r+ s++++++D D K    k+e+w   +
    CCE31000.1 326 VgplhasrsdpffPLAMTLRDCTCFAQI------------DKRSQSVRIRFGDFDWKDPLvKFERWAGVE 383
                   13333334444458**************............88899************8777***998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3710.37
//
Query:       CCE31001.1  [L=495]
Description: related to intracellular membrane protein involved in nucleoside transport [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-39  134.8   8.7    2.7e-30  105.8   1.2    2.3  2  Nucleoside_tran  Nucleoside transporter
     0.0087   15.0  42.1      0.018   14.0   6.8    3.2  3  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
        9.1    4.4   6.4         12    4.0   6.4    1.1  1  RAP1             Rhoptry-associated protein 1 (RAP-1)


Domain annotation for each model (and alignments):
>> Nucleoside_tran  Nucleoside transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   1.1   7.2e-12   4.3e-08       4      54 ..     160     211 ..     156     222 .. 0.85
   2 !  105.8   1.2   4.6e-34   2.7e-30      59     306 ..     252     491 ..     244     493 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 7.2e-12
  Nucleoside_tran   4 vvlinsfnallqnslfglagelp.seYtqavliGqalaGvlvslvmilavas 54 
                      v +++ +++l+qn+ f+ a+  + seY+qa+++Gq +aGvl++++++++v+ 
       CCE31001.1 160 VGFSSWATGLIQNGAFAFAASYGrSEYMQALMAGQSVAGVLPAVAQVVTVLL 211
                      3345559***************9568*********************99865 PP

  == domain 2  score: 105.8 bits;  conditional E-value: 4.6e-34
  Nucleoside_tran  59 kesallYFivsivvvivcvilllvlkklefykeykqlklegslletkeelrqekeeeseskvkltaekskegeenvfvllkvilakikvlalsv 152
                      + sa+lYF+ ++ v++ ++++l+ l + +        +l + l e+ ++  ++  ee e  + ++  ++       + +l v+++k++ la+ +
       CCE31001.1 252 ESSAFLYFFAAVTVSVTALVALFPLVRRHN----A--RLGTRLPEQTATFLRDSTEEAERAIPGASPRK-------VASLGVLFRKLRWLAIGL 332
                      789*****************9997765433....3..33466779999999999999988777777777.......55799************* PP

  Nucleoside_tran 153 vlvftvtlsvfpavtaevks....s.....ilptkee.yfipvllfllfNlfdllGrvlaavimwpdqdsrllvvlvllRllfiplfllcnakp 236
                        +f  ++  fp++ta+++s    +     i+p+ ++  fip l f+ +Nl+dl Gr+ ++ +    + +  l++l+++R++ +pl+llcn++ 
       CCE31001.1 333 AVTFA-VTMFFPVFTAKIHSvrenNadggvISPLFRStAFIP-LGFVFWNLGDLAGRIATSLPISLHDRPFTLFLLSVARVALLPLYLLCNVNG 424
                      ****5.5679*******9993332122222335544434443.789****************99988999*********************995 PP

  Nucleoside_tran 237 qsralpvlfesdllfil.lmllfalsnGYlasllmmlaPkkvkpkeketAgaltsfflvlGLalGavlsfl 306
                      +      ++ sd ++++ ++l+f+l+nG+l s  mm   + v++ e+e+ g ++ +flv+GL +G++lsf 
       CCE31001.1 425 R----GAVVSSDFFYLFvVQLVFGLTNGWLGSTFMMASGQWVDEGEREATGGFMGLFLVIGLTVGSLLSFT 491
                      4....78999999987626899***********************************************97 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2  15.4     0.012        69     209     338 ..      48     191 ..      17     205 .. 0.60
   2 !    6.4  11.9   0.00059       3.5     151     294 ..     254     419 ..     173     428 .. 0.69
   3 !   14.0   6.8   3.1e-06     0.018      65     141 ..     404     489 ..     396     493 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.012
       MFS_1 209 l.w..illialllfff..gfsglltllplylqevlglsglllaglllallalvgailallagrlsdr.......lgrrrrlllallllllaalglalla 295
                 + w  ++++++l++++  +++++lt  p +   ++  + ++++ + +++l + ++    ++  ls++       +    +l+++ ++++l++++ +l+ 
  CCE31001.1  48 FsWteYCIFGFLGVAMlwAWNMFLTAAPYF-SARFSSNPWIQTNFQSGILTVSTVTNLGVLLLLSNKqlsasypFRINLALVMNSIAFALLTASTVLFL 145
                 145665556666554300566688888887.88888885555555555555555555557777777776666666667788888888888888888888 PP

       MFS_1 296 vtssavllllvlvliGf...glgfvfpsllalasdlappeeagtas 338
                   s  + ++++l ++Gf   + g+++  ++a+a+++   e++ +++
  CCE31001.1 146 DVSPEAYFVFLLSVVGFsswATGLIQNGAFAFAASYGRSEYMQALM 191
                 8844444444555555530344444777777777766444433333 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00059
       MFS_1 151 ravfyilaivsllafvlfllllpeepperkrkspkeee................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllply 233
                 +a  y++a+v++ +  l++l+ ++++++ +  +  +e                  g  p+++++ ++ l+++      ++a+ l+  +++++++++p++
  CCE31001.1 254 SAFLYFFAAVTVSVTALVALFPLVRRHNARLGTRLPEQtatflrdsteeaeraiPGASPRKVAS-LGVLFRKL----RWLAIGLA--VTFAVTMFFPVF 345
                 5567888888888888877888777777777777777677888888888777777777777777.88888777....66666666..777888888888 PP

       MFS_1 234 lqevlgls..........glllaglllallalvgailallagrlsdr........lgrrrrlllallllllaalglall 294
                 + + +                   l+ + +++   +++  +g l+ r        l  r+++l+ l+++ +a+l l+ll
  CCE31001.1 346 TAKIHSVRennadggvisP-----LFRSTAFIPLGFVFWNLGDLAGRiatslpisLHDRPFTLFLLSVARVALLPLYLL 419
                 7777777777688844443.....4444444444444557777777755556666666999999999988888888877 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 3.1e-06
       MFS_1  65 lllglllfalg.lllll.f....a..sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllg 141
                 +ll+++  al  l+ll+ +    a  ss + +l+v+ ++ Gl+ g+l ++ + +  +w+ + er    g+++++  +G  +g ll+
  CCE31001.1 404 FLLSVARVALLpLYLLCnVngrgAvvSSDFfYLFVVQLVFGLTNGWLGSTFMMASGQWVDEGEREATGGFMGLFLVIGLTVGSLLS 489
                 3444444444433333332444425655555***************************************************9986 PP

>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   6.4    0.0021        12     132     169 ..     218     255 ..     212     273 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0021
        RAP1 132 skpkststeslksssdskskasaksnvksaskyGesss 169
                 +   s+s +s  sss s+s++s+  +v ++ k Gess 
  CCE31001.1 218 ASAASSSLSSHTSSSHSSSSSSSSREVETGGKRGESSA 255
                 45567778889999*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 3610.96
//
Query:       CCE31002.1  [L=311]
Description: uncharacterized protein CPUR_04853 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   22.5   0.0    0.00029   21.1   0.0    1.7  1  HBS1_N     HBS1 N-terminus
    0.00022   21.1   0.4    0.00041   20.2   0.4    1.4  1  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
  ------ inclusion threshold ------
      0.011   15.4   0.0       0.02   14.6   0.0    1.4  1  CUE        CUE domain
      0.019   15.4   0.8       0.04   14.4   0.8    1.6  1  zf-CCCH_2  RNA-binding, Nab2-type zinc finger
      0.044   13.8   2.3       0.29   11.3   2.3    2.2  1  zf_CCCH_4  Zinc finger domain
       0.56   10.1   5.5          9    6.2   5.5    2.3  1  zf-CCCH_4  CCCH-type zinc finger


Domain annotation for each model (and alignments):
>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   9.6e-08   0.00029      30      76 ..     206     247 ..     196     249 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 9.6e-08
      HBS1_N  30 devrevLgeeaskvtvtekqikeAlwkyyyDvekaldyllnkfkkkk 76 
                 d +r++Lg      t t++qi+ Al  + yD + +++ +++++++k 
  CCE31002.1 206 DMLRSILG-----PTRTDEQIEAALASHGYDLSATIASIMETQSPKD 247
                 6789****.....455***************************9986 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.4   1.4e-07   0.00041       5      26 ..     284     304 ..     282     305 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.4e-07
                 CBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   5 lCrffmrtGyCkyGdrCkFaHg 26 
                 +C+f+m tG+C + + C+F+H+
  CCE31002.1 284 ICKFYMSTGQCLR-ADCRFSHD 304
                 8************.*******6 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   6.6e-06      0.02      13      40 ..     214     241 ..     214     243 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.6e-06
                 TTS-HHHHHHHHHHCTTTHHHHHHHHHH CS
         CUE  13 PdldeevIravLrasngnvEatinaLLe 40 
                 P  ++e+I+a+L ++++++ ati +++e
  CCE31002.1 214 PTRTDEQIEAALASHGYDLSATIASIME 241
                 66799********************998 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.8   1.4e-05      0.04       1      17 [.     284     303 ..     284     303 .. 0.98

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
   zf-CCCH_2   1 pCrffpn...CtnpkCpFaH 17 
                 +C+f++    C +++C+F+H
  CCE31002.1 284 ICKFYMStgqCLRADCRFSH 303
                 8******************* PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.3   9.7e-05      0.29       1      19 []     285     303 ..     285     303 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.7e-05
   zf_CCCH_4   1 Ckfflq.GtCkkGdkCrFaH 19 
                 Ckf++  G+C + d CrF+H
  CCE31002.1 285 CKFYMStGQCLRAD-CRFSH 303
                 ************76.99999 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.5     0.003         9       2      22 .]     284     304 ..     283     304 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.003
   zf-CCCH_4   2 lCpyfa.kGsCrfGdnCrFsHd 22 
                 +C++++ +G+C   d CrFsHd
  CCE31002.1 284 ICKFYMsTGQCLRAD-CRFSHD 304
                 8**********9966.*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2391.08
//
Query:       CCE31003.1  [L=392]
Description: uncharacterized protein CPUR_04854 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-15   57.0  11.6    4.3e-15   55.8  11.6    1.7  1  DUF1771   Domain of unknown function (DUF1771)
    1.7e-07   31.5   0.0    7.5e-07   29.4   0.0    2.1  2  Smr       Smr domain
  ------ inclusion threshold ------
       0.23   11.9   0.2       0.23   11.9   0.2    2.1  2  CDV3      Carnitine deficiency-associated protein 3


Domain annotation for each model (and alignments):
>> DUF1771  Domain of unknown function (DUF1771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8  11.6   7.3e-19   4.3e-15       1      64 []     184     247 ..     184     247 .. 0.99

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 7.3e-19
     DUF1771   1 YerlRaeAdeharkrnelfekAaeAyrrGdgaaAkelseqGkehgekmeeanreAaeaIfeerN 64 
                 Y + R++A++h+ +rn++++ Aa+A++r+d +aAk ls +G+  +e m++a+reAa++++e+rN
  CCE31003.1 184 YLKARQDAIKHGGLRNKFLQSAAQAWNRNDARAAKALSLRGQSENELMRKAHREAARELYEYRN 247
                 8899***********************************************************9 PP

>> Smr  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.3     8e+03      29      52 ..      95     122 ..      67     128 .. 0.65
   2 !   29.4   0.0   1.2e-10   7.5e-07       1      59 [.     258     317 ..     258     333 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.3
                 EEEEE--STTSTT....HCHHHHHHHHH CS
         Smr  29 svevihGkGahag....vgvLrpavmgw 52 
                 s +v  Gk +h +     ++ ++++++ 
  CCE31003.1  95 SALVKQGKKNHGKrsgnGPAQKENIPNS 122
                 5555556555522233555555555555 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 1.2e-10
                 EE-TT--HHHHHHHHHHHHHHHHHTT-SEEEEE--STTSTT..HCHHHHHHHHHHHCSTTE CS
         Smr   1 lDLhglrraealnvletfldaasakglrsvevihGkGahag..vgvLrpavmgwLagkeav 59 
                 +DLhgl+ +ea + le+ l + s++  r v  i G+G+h++  + +  +av+++L++ ++v
  CCE31003.1 258 VDLHGLHTEEAVEYLEKTLMDNSKE-PRPVYAIIGTGHHSKngKDKVGRAVRNFLNEWRYV 317
                 8********************9998.*************7666899999999999987655 PP

>> CDV3  Carnitine deficiency-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   3.8e-05      0.23      94     128 ..      61      96 ..      50      97 .. 0.87
   2 ?   -2.6   0.9       1.2   7.2e+03      53     100 ..     107     150 ..      99     176 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.8e-05
        CDV3  94 PPaarntttake.rrkrkqaaPeitseeqFPsLsat 128
                  P++r  + +++  ++++ +aP i  +e+FPsL ++
  CCE31003.1  61 SPQVRSRPVSRHqVKETNTSAPAIDDNEAFPSLGSA 96 
                 6899998887776889999**************875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
        CDV3  53 tdkssgPWnksaaaeqpaaeetkpveeepvpeeaktsgvYrPPaarnt 100
                 + + +gP +k++ +++ a+     v+ +p+p + +    +r Pa  n 
  CCE31003.1 107 KRSGNGPAQKENIPNSLAD----IVKMTPSPGPGSPRPGFRKPANGNG 150
                 4555666666655555554....3444444444444444555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3269.79
//
Query:       CCE31004.1  [L=375]
Description: uncharacterized protein CPUR_04855 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-12   47.7   2.7    1.9e-12   47.7   2.7    2.3  3  SNARE_assoc  SNARE associated Golgi protein
  ------ inclusion threshold ------
       0.17   12.3   0.1       0.38   11.2   0.1    1.6  1  FumaraseC_C  Fumarase C C-terminus


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.4      0.02   1.8e+02      67      91 ..     150     174 ..      93     175 .. 0.79
   2 !   47.7   2.7   2.2e-16   1.9e-12       4      91 ..     166     252 ..     159     258 .. 0.92
   3 ?   -2.7   0.1       0.9     8e+03      25      42 ..     278     295 ..     275     306 .. 0.57

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.02
  SNARE_assoc  67 gflallllrllpivPrdlvnyvaGl 91 
                   f+++++  + pi+ ++ +n +aGl
   CCE31004.1 150 VFTLIFVTAFPPIIGYSTANTIAGL 174
                  4667999999999999999999997 PP

  == domain 2  score: 47.7 bits;  conditional E-value: 2.2e-16
  SNARE_assoc   4 evllvaaGvlfglllgtlvtslgallGaslayllgrylgrkalrrkllsekrvkalerlverygflallllrllpivPrdlvnyvaGl 91 
                  ++ +++aG+++g+ +g+++++++++lG+++a+l++r +++ +++r ++  +r+ al + ++r g+l+l  +r++p +P++l+n ++++
   CCE31004.1 166 STANTIAGLVYGFPWGWPIAAAACVLGSLCAFLASRTVLSGRVERMVGGDHRFVALGQVLRREGILYLTGIRFCP-LPFSLSNGFLAT 252
                  556689*********************************************************************.79****977655 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.9
  SNARE_assoc  25 lgallGaslayllgrylg 42 
                  +g+ lG++++ ++g  + 
   CCE31004.1 278 MGMALGGTIGLVVGLAIY 295
                  555555555555554444 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   4.2e-05      0.38       2      18 ..     156     172 ..     155     176 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.2e-05
                  GGGGHHHHHHHHHHHHH CS
  FumaraseC_C   2 VTaLnphIGYekAakIA 18 
                  VTa  p+IGY +A  IA
   CCE31004.1 156 VTAFPPIIGYSTANTIA 172
                  9***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 3222.49
//
Query:       CCE31005.1  [L=529]
Description: uncharacterized protein CPUR_04856 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.08   12.5   0.1        2.4    7.7   0.0    2.2  2  PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subun


Domain annotation for each model (and alignments):
>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00014       2.4      85     134 ..       9      58 ..       7      65 .. 0.90
   2 ?    2.5   0.0    0.0054        97      44      67 ..     251     273 ..     228     321 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00014
  PI3K_P85_iSH2  85 klqenleqlksrlkelhsskekLeedlkqqkeeereleReinalkpellq 134
                    +l + ++ l ++++ l + k  Le++l+   e+ + l  +   + pe+++
     CCE31005.1   9 SLADAFNALADQVQVLADRKTVLEHKLRFAHEQFQYLADKYAHATPEIVE 58 
                    6778889999***************************9999999999975 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.0054
  PI3K_P85_iSH2  44 seeiqlkrqaleaFneaikmFeeq 67 
                    ++eiq+k++  + ++++i+m e  
     CCE31005.1 251 RNEIQMKKMDSK-YGNMISMIEGL 273
                    79******9975.99999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4029.61
//
Query:       CCE31006.1  [L=490]
Description: related to prolyl aminopeptidase A [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-08   34.9   0.1    3.4e-08   33.5   0.0    1.7  2  Abhydrolase_1  alpha/beta hydrolase fold
      3e-07   29.9   0.0    5.5e-07   29.1   0.0    1.4  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0037   16.8   0.0      0.012   15.1   0.0    1.7  2  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.021   14.5   0.0      0.098   12.2   0.0    1.9  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
      0.022   13.6   0.0      0.048   12.4   0.0    1.6  2  Peptidase_S28  Serine carboxypeptidase S28


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   9.4e-12   3.4e-08       3     131 ..      83     231 ..      81     250 .. 0.73
   2 ?   -2.1   0.0      0.65   2.3e+03     189     241 ..     412     458 ..     402     469 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 9.4e-12
                    EEEE-STTT.CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB............CHH.....SHHHHHHHHHHHHHHCT....TSSEE. CS
  Abhydrolase_1   3 lvilhGlpg.ssdvwaerglapaLakdgfdvillDlrGvgySspapacin...........ddy.....gtasvaddldrildalg....ddklt. 76 
                    +v+l G+pg +s ++ ++ l +a   +g++v+ +D+rG g S+p +a+                     + +++ +d ++++  l      +k + 
     CCE31006.1  83 IVYLEGGPGfGSPSPSGHPLTRAALPRGYQVLFIDHRGTGLSTPVSAEMLsavcgsdadtqA-SylrlmRQDNTVRDCEAVRKCLTegwpAHKTAw 177
                    89999****966666666666666666*******************9755777776666662.046666888888888888666642222444444 PP

                    .EEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHH CS
  Abhydrolase_1  77 .lvGhSmGGmialayaaeyperVkalvllgaidpaaslieaqrqqaksfpdffdgy 131
                       G+S+GG++ l y++++pe  +   l+g+   a+    a++ + ++f ++ +++
     CCE31006.1 178 sTFGQSYGGFVTLSYLSMHPEGLREAFLTGG--LAPVGKTADEVYGATFRRTTERN 231
                    89*****************************..55555555555555555554444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.65
                    HHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEE CS
  Abhydrolase_1 189 ieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkr 241
                     +qwp+++   +l++         p++  s  +D++v+++ ++d  +l ++ +
     CCE31006.1 412 YDQWPALYDQERLRKNTV------PVYAASYIEDMYVDYQLGRDTSKLVRGTK 458
                    466666666666666666......99999999999999999999988887744 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.5e-10   5.5e-07      23     111 ..     102     210 ..      89     244 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.5e-10
  Hydrolase_4  23 laeaLaaqGfavyalDhrGhGrse..................gkrghvpsfddyvdDlaafvekvkeehpel..plfllGhSmGGliallyllrypdk 100
                  l++a   +G++v+ +DhrG G s                       ++ + d  v+D++a+ + + e +p        +G+S GG+++l+yl ++p+ 
   CCE31006.1 102 LTRAALPRGYQVLFIDHRGTGLSTpvsaemlsavcgsdadtqASYLRLMRQDNTVRDCEAVRKCLTEGWPAHktAWSTFGQSYGGFVTLSYLSMHPEG 199
                  55666679*******************************988777789999******************999556678******************** PP

  Hydrolase_4 101 vaglilsaPal 111
                  ++ + l++ + 
   CCE31006.1 200 LREAFLTGGLA 210
                  *9999988664 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.48   1.7e+03      13      26 ..     109     122 ..     103     124 .. 0.88
   2 !   15.1   0.0   3.4e-06     0.012      38      88 ..     149     199 ..     138     239 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.48
                   CT-EEEEE--TTSS CS
  Peptidase_S9  13 rGyvvvvanirGsg 26 
                   rGy v++++ rG+g
    CCE31006.1 109 RGYQVLFIDHRGTG 122
                   8***********97 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.4e-06
                   GGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG CS
  Peptidase_S9  38 rklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdl 88 
                       +n+++D+ a+ + l++   + ++    +G SyGG++t+  l ++p+ 
    CCE31006.1 149 LMRQDNTVRDCEAVRKCLTEGWPAHKTAWSTFGQSYGGFVTLSYLSMHPEG 199
                   56689******999999977779999999*******************985 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.7e-05     0.098      52     129 ..      92     203 ..      44     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
                    H.............HHHTT-EEEEEE-TTSTTS-S---TT....................TTTHHHHHHHHHHHHHHC.TTEEEEEEEEEECHHHH CS
  Peptidase_S15  52 v.............fvarGYavVvqdvrGtggSeGeftvg....................dsdeaedgadvidWlakq.pwsnGkVgmtGiSYlGt 113
                    +              ++rGY v++ d rGtg S+ +   +                    +++ ++d  +v + l++  p  +    ++G SY+G+
     CCE31006.1  92 FgspspsghpltraALPRGYQVLFIDHRGTGLSTPVSAEMlsavcgsdadtqasylrlmrQDNTVRDCEAVRKCLTEGwPAHKTAWSTFGQSYGGF 187
                    1555555555666689*****************988766668888898888888888887777888888888888888899999999********* PP

                    HHHHHCTT--TTEEEE CS
  Peptidase_S15 114 tqllaaatgvpalkai 129
                    + l  ++ ++++l+ +
     CCE31006.1 188 VTLSYLSMHPEGLREA 203
                    *******9*9999865 PP

>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.4e-05     0.048      29     136 ..      80     198 ..      72     217 .. 0.72
   2 ?   -3.9   0.0       1.3   4.5e+03     386     420 ..     412     444 ..     410     454 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
  Peptidase_S28  29 gpiflyiGgegslsaswvsngeilklAkefgAlvlslEHRfYGqSiPvk............dlstenlrylsseqaLaDlasfikalkqkfklsss 112
                    +p  +y+ g    ++ + s   +++ A   g +vl++ HR  G S Pv+            d++ + lr +     + D+ +++k l++    +++
     CCE31006.1  80 KPYIVYLEGGPGFGSPSPSGHPLTRAALPRGYQVLFIDHRGTGLSTPVSaemlsavcgsdaDTQASYLRLMRQDNTVRDCEAVRKCLTEGW-PAHK 174
                    566666633333333333333467777778889999999999999998633333333333256667899999****************777.5667 PP

  Peptidase_S28 113 skwitfGgSYsgsLaawarkkyPe 136
                    ++w tfG SY+g        ++Pe
     CCE31006.1 175 TAWSTFGQSYGGFVTLSYLSMHPE 198
                    77**********887666666665 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.3
  Peptidase_S28 386 lDPWhalglkkstdssvvpllikgaahcaDmypas 420
                     D W al  +++  ++ vp+    a++  Dmy  +
     CCE31006.1 412 YDQWPALYDQERLRKNTVPV--YAASYIEDMYVDY 444
                    58899998888888888886..7899999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3521.21
//
Query:       CCE31007.1  [L=914]
Description: related to DNA polymerase theta [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-17   63.7   0.0    4.1e-17   62.5   0.0    1.6  1  DEAD        DEAD/DEAH box helicase
    6.3e-05   23.3   0.0    0.00022   21.6   0.0    2.0  2  Helicase_C  Helicase conserved C-terminal domain
    0.00049   20.1   0.0    0.00095   19.2   0.0    1.4  1  ResIII      Type III restriction enzyme, res subunit
     0.0034   17.6   0.1      0.038   14.2   0.0    2.3  2  DUF4332     Domain of unknown function (DUF4332)
  ------ inclusion threshold ------
      0.018   15.6   0.0      0.053   14.1   0.0    1.8  1  HHH_5       Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   1.1e-20   4.1e-17      11     170 ..     144     317 ..     132     322 .. 0.84

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 1.1e-20
                 HHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.......................SEEEEEETTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxx RF
        DEAD  11 ilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid.......................lrvlliiggva 86 
                 + g+++++ +a+TG GK+l++ + +l++++e   ++g+kal++ P  +L+++ +  l+k+ ++++                       +rv+ ++gg +
  CCE31007.1 144 LSGERNLVYCAPTGGGKSLVADLLMLKRIME---EPGTKALLILPYVALVQEKVGWLRKIVQNVKivddqstavnsnspwrqradhgtIRVVGFFGGGK 239
                 33668************************86...9999***********************96555566777777777888888888899999999999 PP

                 HHHHHHHHHTTCSEEEEEHHHHHHHH....HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  87 ardqlskldngvdivvgtpgrlddll....stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                  r  ++++    di v t ++   l+    +    ++s++r +VlDE +++ d+ ++  ++ i+++l +    +klq  +i +SATlp
  CCE31007.1 240 IRATWDDF----DIGVCTLEKANALVngaiD--DSSVSKLRAVVLDELHMIDDDHRGYLLELIATKLLNL--GQKLQ--IIGMSATLP 317
                 98888888....************9955332..334*******************************333..33355..********9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.1   1.5e+04       7      35 ..     170     197 ..     165     216 .. 0.67
   2 !   21.6   0.0     6e-08   0.00022      49     111 .]     472     538 ..     398     538 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.1
                 HHHHHHTTTTSEEEEEESSHHHHHH.HHHH CS
  Helicase_C   7 lellkleeeggkilifvntidrlek.vkll 35 
                 +++  +ee g k+l++++++  +++ v +l
  CCE31007.1 170 KRI--MEEPGTKALLILPYVALVQEkVGWL 197
                 344..5889999999999999665445554 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 6e-08
                 TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEE.ESSSSSS...HHHHHHHHTTSSSTT CS
  Helicase_C  49 elpqnereeileqfnkgesdvLiatdvaerGidipkvnlVi.nfdlprn...vtsyiqriGRtgRag 111
                  l+++ere i +++ +g   v +at  ++ Gi++p  +++  n+ + r+   ++ + q++GR+gR g
  CCE31007.1 472 GLTSEERELIAAAYDSGVLLVCVATCSLAAGINLPARRVILhNVRMGREyigPAMLRQMRGRAGRQG 538
                 5999*******************************555443456666665557************75 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.6e-07   0.00095      22     170 ..     145     317 ..     111     318 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.6e-07
                 .TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG............GEEEESSS-B--............... CS
      ResIII  22 krdkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke........igkkvsgdkkka............... 96 
                  ++++++  ++TG GK+lva + + +r++++ +  k+l++ p  +l++     ++k+ ++ +                   +++               
  CCE31007.1 145 SGERNLVYCAPTGGGKSLVAdLLMLKRIMEE-PGTKALLILPYVALVQEKVGWLRKIVQNVKIVddqstavnS--------NSPwrqradhgtirvvgf 234
                 5677778889**********77777777776.557************99997777766665432332232221........111333344446667777 PP

                 ............-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T.......TTHHHHHT---SEEEEEESS-S CS
      ResIII  97 .....kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk.......swreilekfkeavllglTATpe 170
                       +   ++ +i v t ++++a     + + ++ + ++   ++ DE H + +++         +++l+  ++  ++g++AT++
  CCE31007.1 235 fgggkIRATWDDFDIGVCTLEKANALV---NGAIDDSSVSKLRAVVLDELHMIDDDHrgyllelIATKLLNLGQKLQIIGMSATLP 317
                 776665668889999999999999999...8888888888888************84666555566666888899*********86 PP

>> DUF4332  Domain of unknown function (DUF4332)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.23   8.1e+02      34      56 ..     714     736 ..     705     744 .. 0.84
   2 !   14.2   0.0   1.1e-05     0.038      54     102 ..     828     876 ..     824     894 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.23
     DUF4332  34 alaeklgisernvlklanlAdLa 56 
                 +++++lgi+  +vl+la+ A L 
  CCE31007.1 714 RVLQHLGIKPTSVLRLAQGAALK 736
                 478999***********999986 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.1e-05
     DUF4332  54 dLarikgigeeyaeLLeaaGvdsvaeLaqrnpanLhqklkrlnrskklk 102
                  L++++ i+++ a +  + G +sva+La+ np++L+  l++ + +k  +
  CCE31007.1 828 ALSKVPFIKSRTARVFFENGYRSVAALANANPSDLVPILMQAQPNKLRV 876
                 6889999*****************************9999988766544 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.5e-05     0.053       3      37 ..     828     862 ..     826     865 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
                 HHHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHH CS
       HHH_5   3 eLlsvsGiGpktAlallsaGiesvedlaaadveeL 37 
                  L +v+ i  +tA+   ++G++sv++la+a++ +L
  CCE31007.1 828 ALSKVPFIKSRTARVFFENGYRSVAALANANPSDL 862
                 5889***************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (914 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.39
# Mc/sec: 7104.04
//
Query:       CCE31008.1  [L=1660]
Description: related to PHD finger protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-20   70.8   4.2    9.8e-20   70.8   4.2    4.4  3  zf-HC5HC2H_2     PHD-zinc-finger like domain
      8e-16   58.0   0.0    1.7e-15   56.9   0.0    1.5  1  BAH              BAH domain
    3.1e-15   56.2   6.3    3.1e-15   56.2   6.3    4.8  5  zf-HC5HC2H       PHD-like zinc-binding domain
    2.9e-11   43.1  59.5    1.4e-06   28.1   9.3    6.5  7  PHD              PHD-finger
    6.4e-09   35.2   6.4    6.4e-09   35.2   6.4    5.7  8  PHD_2            PHD-finger
     0.0005   20.2   0.1     0.0022   18.2   0.0    2.2  2  Myb_DNA-binding  Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.013   15.4  49.4      0.015   15.2   3.0    6.4  6  C1_1             Phorbol esters/diacylglycerol binding domain
       0.05   13.9   0.4       0.05   13.9   0.4    6.7  7  C1_2             C1 domain
       0.27   11.2  36.0        0.2   11.6   5.6    4.4  4  Prok-RING_1      Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.2     0.016        32      57      86 ..     361     390 ..     338     399 .. 0.74
   2 ?    4.0   3.3     0.027        54      44      85 ..     906     948 ..     890     980 .. 0.72
   3 !   70.8   4.2   4.9e-23   9.8e-20      13      95 ..    1042    1123 ..    1037    1156 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.016
  zf-HC5HC2H_2  57 kCllCkkr..kGaciqCskkeCktafHvtCal 86 
                    C  C++   +  ++ C+   C++++H++C  
    CCE31008.1 361 LCKRCTSYcaSNDSVDCAV--CQNTYHMNCVK 390
                   3444444444456788988..*********75 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.027
  zf-HC5HC2H_2  44 vd.vekikkerlkekCllCkkr...kGaciqCskkeCktafHvtCa 85 
                    + v +++k   ++ C++C+++      ++ C +  C+ + H +C 
    CCE31008.1 906 STpVPEMPKP-RTLPCAICDQMeplGDQQLSCRE--CRLTVHRHCY 948
                   2336666666.4899*******774446788887..*********5 PP

  == domain 3  score: 70.8 bits;  conditional E-value: 4.9e-23
  zf-HC5HC2H_2   13 lkktsderwvHvlCallvpevsfsnvaerepvd.vekikkerlkekCllCkkrkGaciqCskkeCktafHvtCalaaglvmele 95  
                    lk+t+d++wvHv+Ca+++pev+f + +  ep++ + +i+++++ e C +C++r+Gaci C++  C+  +Hv Ca+++g v+ ++
    CCE31008.1 1042 LKRTADNNWVHVTCATWTPEVKFGSAKALEPCEgIPSIARAKFDEVCQVCSQRSGACISCQQ--CRLPYHVECAHQQGHVLGFD 1123
                    89**********************************************************99..************99876554 PP

>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   8.7e-19   1.7e-15       3     115 ..     203     315 ..     201     321 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 8.7e-19
                 EETTGEEEEEETTSTTEEEEEEEEEEEEETTST....CEEEEEEEEEEECGGGSTTTTHCCCTTEEEEEEEEEEEEGGGEEEEEEEEEHHHHCTECCHC CS
         BAH   3 yavGdfVyfddtstdepyqirrIeeLkenakne....eaeatvlvdwflrpeetksalklrqkrElfltrqseilplaairgkcrVvllsdleeaqnyl 97 
                 ++++d Vy+  +   epy+ +rI e+  ++ +      + ++v+++wf+rp+++   +k+ ++r +f+t +s++ pl+a rgkc ++++ d+ +++   
  CCE31008.1 203 LEPNDHVYLVCEPPGEPYYLGRIMEFVHSPHAPsngsRRVQMVRINWFYRPKDI--GRKTTDTRLVFATMHSDVSPLTALRGKCCIRHRVDIADLDAFR 299
                 6789**********************66666666566889**************..8888999*********************************988 PP

                 HHCSTTEEEEEEEEETTT CS
         BAH  98 pkklddtFycslvydpta 115
                 +   +d+F ++ +yd++ 
  CCE31008.1 300 K--TPDSFWYEKLYDRYI 315
                 7..************954 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   4.4     0.043        86      37      67 ..     360     390 ..     337     410 .. 0.78
   2 ?   -3.5   0.1       6.7   1.3e+04      30      45 ..     743     758 ..     736     761 .. 0.73
   3 ?    3.0   4.3      0.06   1.2e+02      15      67 ..     898     949 ..     888     981 .. 0.71
   4 !   56.2   6.3   1.6e-18   3.1e-15       1      89 [.    1052    1156 ..    1052    1157 .. 0.88
   5 ?   -2.5   0.1       3.1   6.2e+03      20      43 ..    1251    1274 ..    1243    1280 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.043
  zf-HC5HC2H  37 lkCylCkkk..vGaciqCskkkCkkafHvtCak 67 
                 + C+ C++      ++ C+   C++++H+ C k
  CCE31008.1 360 KLCKRCTSYcaSNDSVDCAV--CQNTYHMNCVK 390
                 45666665522336788888..*********86 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.7
  zf-HC5HC2H  30 ikkerkklkCylCkkk 45 
                 +  ++++ +C +C+++
  CCE31008.1 743 ALDKKRSFVCQFCSTT 758
                 5566778899999875 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.06
  zf-HC5HC2H  15 eekeiemeeiedvekikkerkklkCylCkkk..vG.aciqCskkkCkkafHvtCak 67 
                 +eke ++ + + v +++k  ++l C +C++    G   ++C++  C+ + H +C  
  CCE31008.1 898 KEKE-KTADSTPVPEMPKP-RTLPCAICDQMepLGdQQLSCRE--CRLTVHRHCYG 949
                 3333.56666777777765.5789*****87664437899988..*********75 PP

  == domain 4  score: 56.2 bits;  conditional E-value: 1.6e-18
  zf-HC5HC2H    1 HvvCalwipevvfeeekeiemeeiedvekikkerkklkCylCkkkvGaciqCskkkCkkafHvtCakeagllleee......eeke........... 80  
                  Hv+Ca w+pev+f ++k    e++e++ +i++++++ +C +C+++ Gaci+C++  C+  +Hv Ca+++g++l ++      +  +           
  CCE31008.1 1052 HVTCATWTPEVKFGSAKA--LEPCEGIPSIARAKFDEVCQVCSQRSGACISCQQ--CRLPYHVECAHQQGHVLGFDiapvksS--Rrdhvqivnikg 1142
                  9************99987..8*******************************99..*****************9997776541..135567777777 PP

  zf-HC5HC2H   81 .....klksyCkkH 89  
                       ++ ++Ck H
  CCE31008.1 1143 esgimSAVMWCKDH 1156
                  88888888889888 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 3.1
  zf-HC5HC2H   20 emeeiedvekikkerkklkCylCk 43  
                  + ee+++ e++++++++  C++C 
  CCE31008.1 1251 QREEADEAEDAAANARQPGCKICI 1274
                  456778888888899999999995 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   9.3   7.1e-10   1.4e-06       2      51 ..     362     410 ..     361     411 .. 0.91
   2 ?    0.4   0.1      0.32   6.3e+02      38      50 ..     744     756 ..     737     758 .. 0.69
   3 !   24.7   8.6     8e-09   1.6e-05       2      51 ..     920     966 ..     919     967 .. 0.89
   4 ?   -3.7   0.1         6   1.2e+04      25      34 ..     974     983 ..     971     988 .. 0.59
   5 ?   -0.7   0.0      0.66   1.3e+03      22      33 ..    1048    1059 ..    1048    1064 .. 0.80
   6 !    9.0  10.5   0.00066       1.3       1      31 [.    1087    1114 ..    1087    1118 .. 0.91
   7 ?    1.5   0.1      0.14   2.7e+02      40      50 ..    1312    1322 ..    1301    1324 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 7.1e-10
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 C+ C +   ++++ v C  C++++H++C+kppl +++     w C  C++
  CCE31008.1 362 CKRCTS-YCASNDSVDCAVCQNTYHMNCVKPPLLKKPSRGFAWSCAACSR 410
                 999999.99*************************7777666*******86 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.32
                 SHHSSTBSSTTTH CS
         PHD  38 ekpegewlCekCk 50 
                  +++++++C+ C+
  CCE31008.1 744 LDKKRSFVCQFCS 756
                 4455599****97 PP

  == domain 3  score: 24.7 bits;  conditional E-value: 8e-09
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 Ca+C++ +  +++ ++C +C+ ++H  C+++ +    + +g+wlC+ C +
  CCE31008.1 920 CAICDQMEPLGDQQLSCRECRLTVHRHCYGVVDH---RTQGKWLCDMCAN 966
                 ******7777**********************88...44568******86 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 6
                 EETTTSSSTH CS
         PHD  25 fHqkClkppl 34 
                  H kC   p+
  CCE31008.1 974 IHYKCTLCPV 983
                 5666665554 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 0.66
                  SCEEETTTSSST CS
         PHD   22 krwfHqkClkpp 33  
                  ++w+H++C + +
  CCE31008.1 1048 NNWVHVTCATWT 1059
                  58******8866 PP

  == domain 6  score: 9.0 bits;  conditional E-value: 0.00066
                  SBTTTTSTTSTTSCEEEETTTSCEEETTTSS CS
         PHD    1 rCavCkkksdeeeelvqCdgCkrwfHqkClk 31  
                  +C+vC++    ++  ++C++C+  +H++C +
  CCE31008.1 1087 VCQVCSQ---RSGACISCQQCRLPYHVECAH 1114
                  5******...79*****************76 PP

  == domain 7  score: 1.5 bits;  conditional E-value: 0.14
                  HSSTBSSTTTH CS
         PHD   40 pegewlCekCk 50  
                  ++++++C kCk
  CCE31008.1 1312 EQRKFQCHKCK 1322
                  44589999998 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.6       6.4   1.3e+04      31      35 ..     361     365 ..     359     366 .. 0.76
   2 !    6.1   2.2    0.0042       8.3       5      35 ..     375     408 ..     371     409 .. 0.82
   3 ?   -4.1   0.2       6.4   1.3e+04      29      35 ..     749     755 ..     745     756 .. 0.66
   4 ?   -1.8   0.1       1.2   2.3e+03      31      36 .]     793     798 ..     785     798 .. 0.82
   5 !   35.2   6.4   3.2e-12   6.4e-09       5      36 .]     934     965 ..     931     965 .. 0.94
   6 ?   -4.1   0.2       6.2   1.2e+04      13      18 ..     973     978 ..     971     987 .. 0.57
   7 ?    2.0   4.5     0.075   1.5e+02       4      19 ..    1098    1113 ..    1095    1121 .. 0.87
   8 ?   -2.2   0.2       1.6   3.1e+03      27      35 ..    1313    1321 ..    1308    1322 .. 0.71

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6.4
       PHD_2  31 lCrrC 35 
                 lC+rC
  CCE31008.1 361 LCKRC 365
                 58888 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0042
       PHD_2   5 lsCdkCsvaVHasCYGvskesdgee...WlCrrC 35 
                 + C+ C+   H++C + +  ++      W C+ C
  CCE31008.1 375 VDCAVCQNTYHMNCVKPPLLKKPSRgfaWSCAAC 408
                 78************99777666654678****** PP

  == domain 3  score: -4.1 bits;  conditional E-value: 6.4
       PHD_2  29 eWlCrrC 35 
                 +++C+ C
  CCE31008.1 749 SFVCQFC 755
                 5788877 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.2
       PHD_2  31 lCrrCe 36 
                 lCrrC+
  CCE31008.1 793 LCRRCA 798
                 79**95 PP

  == domain 5  score: 35.2 bits;  conditional E-value: 3.2e-12
       PHD_2   5 lsCdkCsvaVHasCYGvskesdgeeWlCrrCe 36 
                 lsC +C++ VH++CYGv+++ ++ +WlC+ C+
  CCE31008.1 934 LSCRECRLTVHRHCYGVVDHRTQGKWLCDMCA 965
                 89*********************99******6 PP

  == domain 6  score: -4.1 bits;  conditional E-value: 6.2
       PHD_2  13 aVHasC 18 
                 ++H +C
  CCE31008.1 973 SIHYKC 978
                 555555 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.075
       PHD_2    4 llsCdkCsvaVHasCY 19  
                   +sC++C++  H +C 
  CCE31008.1 1098 CISCQQCRLPYHVECA 1113
                  69*************6 PP

  == domain 8  score: -2.2 bits;  conditional E-value: 1.6
       PHD_2   27 geeWlCrrC 35  
                  + ++ C +C
  CCE31008.1 1313 QRKFQCHKC 1321
                  446889999 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       8.8   1.7e+04      19      26 ..     338     345 ..     333     349 .. 0.76
   2 !   18.2   0.0   1.1e-06    0.0022       5      46 .]     653     694 ..     652     694 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 8.8
                      HTTCHHHH CS
  Myb_DNA-binding  19 hGnrWkkI 26 
                      +G+rWk +
       CCE31008.1 338 LGERWKFV 345
                      899**987 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1.1e-06
                      BHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 teeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrnyl 46 
                      t+ E+++++e+v+k+G+   ++ +++ + t+ ++  ++++++
       CCE31008.1 653 TPAEQKKFEEGVAKYGSELHLVMKHVKTMTPGEVVRYYYTWK 694
                      899************************************996 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   4.9   4.1e-05     0.081      12      44 ..     360     390 ..     353     392 .. 0.91
   2 ?   -1.7   0.1       1.4   2.8e+03      28      36 ..     402     410 ..     393     412 .. 0.83
   3 ?   15.2   3.0   7.5e-06     0.015      14      50 ..     920     955 ..     915     958 .. 0.86
   4 ?    4.0   0.9     0.022        45       6      38 ..     953     985 ..     950     988 .. 0.83
   5 ?    5.6   8.6    0.0074        15      11      45 ..    1085    1115 ..    1079    1118 .. 0.86
   6 ?    0.6   0.2      0.26   5.3e+02      21      37 ..    1311    1324 ..    1303    1325 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-05
                 -B-TTT-SB--SSSS-EEEETTT--EE-CCCCT CS
        C1_1  12 tfCkhCgeflwgkekqglkCswCkllvHkkChe 44 
                 + Ck C + +   +   + C++C+ ++H +C++
  CCE31008.1 360 KLCKRCTSYC--ASNDSVDCAVCQNTYHMNCVK 390
                 68********..*******************85 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
                 EEEETTT-- CS
        C1_1  28 glkCswCkl 36 
                 +++C++C++
  CCE31008.1 402 AWSCAACSR 410
                 799****86 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 7.5e-06
                 -TTT-SB--SSSS-EEEETTT--EE-CCCCTTS-SBT CS
        C1_1  14 CkhCgeflwgkekqglkCswCkllvHkkChekvpkec 50 
                 C+ C+++   ++ q l+C++C+l+vH +C+  v+ ++
  CCE31008.1 920 CAICDQME-PLGDQQLSCRECRLTVHRHCYGVVDHRT 955
                 99998876.79******************99887665 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.022
                 E--SS--B-TTT-SB--SSSS-EEEETTT--EE CS
        C1_1   6 rnfkqptfCkhCgeflwgkekqglkCswCkllv 38 
                 ++++ +  C+ C++  + + + ++kC+ C + v
  CCE31008.1 953 HRTQGKWLCDMCANDKSPQVSIHYKCTLCPVEV 985
                 44477889*******988***********8765 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.0074
                  --B-TTT-SB--SSSS-EEEETTT--EE-CCCCTT CS
        C1_1   11 ptfCkhCgeflwgkekqglkCswCkllvHkkChek 45  
                     C+ C +        +++C++C+l +H +C+++
  CCE31008.1 1085 DEVCQVCSQRS----GACISCQQCRLPYHVECAHQ 1115
                  56788888888....99***************986 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.26
                  --SSSS-EEEETTT--E CS
        C1_1   21 lwgkekqglkCswCkll 37  
                  +   e + ++C+ Ck++
  CCE31008.1 1311 V---EQRKFQCHKCKMN 1324
                  4...77889*****986 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   4.6      0.71   1.4e+03      14      47 .]     355     389 ..     343     389 .. 0.78
   2 ?   -2.4   0.1       3.3   6.5e+03      19      25 ..     403     409 ..     395     413 .. 0.57
   3 ?    0.8   0.1      0.32   6.3e+02      14      28 ..     745     759 ..     738     762 .. 0.81
   4 ?   13.9   0.4   2.5e-05      0.05      15      46 ..     914     947 ..     909     948 .. 0.85
   5 ?    8.9   0.4   0.00093       1.9      15      39 ..     955     982 ..     951     987 .. 0.77
   6 ?    7.2   6.3    0.0031       6.2      19      47 .]    1086    1113 ..    1080    1113 .. 0.91
   7 ?   -2.1   0.1       2.5     5e+03      16      25 ..    1313    1322 ..    1307    1327 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.71
        C1_2  14 dssesfnCsaCgrk.idgff.YsCseCdfslhvrCa 47 
                   s+ + C+ C     ++ +   C  C+ + h++C+
  CCE31008.1 355 LTSAVKLCKRCTSYcASN-DsVDCAVCQNTYHMNCV 389
                 566778999999995334.3499*99********96 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.3
        C1_2  19 fnCsaCg 25 
                 ++C aC 
  CCE31008.1 403 WSCAACS 409
                 4566665 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.32
        C1_2  14 dssesfnCsaCgrki 28 
                 d++ sf C+ C +++
  CCE31008.1 745 DKKRSFVCQFCSTTT 759
                 68899******9874 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 2.5e-05
        C1_2  15 ssesfnCsaCgrk..idgffYsCseCdfslhvrC 46 
                 +  + +C +C++     + + sC eC+ ++h  C
  CCE31008.1 914 KPRTLPCAICDQMepLGDQQLSCRECRLTVHRHC 947
                 566789******98765666************** PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.00093
        C1_2  15 ssesfnCsaCgrk.idgff...YsCseCd 39 
                  ++++ C+ C ++ + +     Y+C+ C 
  CCE31008.1 955 TQGKWLCDMCANDkS-PQVsihYKCTLCP 982
                 67899********53.444578***9895 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0031
        C1_2   19 fnCsaCgrkidgffYsCseCdfslhvrCa 47  
                    C++C + + g + sC++C+   hv+Ca
  CCE31008.1 1086 EVCQVCSQRS-GACISCQQCRLPYHVECA 1113
                  67*******6.999**************8 PP

  == domain 7  score: -2.1 bits;  conditional E-value: 2.5
        C1_2   16 sesfnCsaCg 25  
                  + +f+C+ C+
  CCE31008.1 1313 QRKFQCHKCK 1322
                  4556666665 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.2     0.016        31       5      36 ..     360     390 ..     357     391 .. 0.87
   2 ?    9.1   3.1   0.00059       1.2       6      38 ..     919     951 ..     916     958 .. 0.90
   3 ?   -3.2   0.1       4.3   8.6e+03       5      16 ..     976     987 ..     974     989 .. 0.78
   4 ?   11.6   5.6   9.8e-05       0.2       3      41 ..    1084    1119 ..    1082    1128 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.016
  Prok-RING_1   5 kkCpvCgkelkeedDiVvCpeCgtpyHraCye 36 
                  k C+ C    +++ D V C +C   yH +C +
   CCE31008.1 360 KLCKRCTSYCASN-DSVDCAVCQNTYHMNCVK 390
                  5699999888777.9***************75 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00059
  Prok-RING_1   6 kCpvCgkelkeedDiVvCpeCgtpyHraCyeka 38 
                   C +C++    +d    C eC    Hr+Cy  +
   CCE31008.1 919 PCAICDQMEPLGDQQLSCRECRLTVHRHCYGVV 951
                  6******9999999****************755 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.3
  Prok-RING_1   5 kkCpvCgkelke 16 
                   kC++C  e++e
   CCE31008.1 976 YKCTLCPVEVTE 987
                  69****988776 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 9.8e-05
  Prok-RING_1    3 tgkkCpvCgkelkeedDiVvCpeCgtpyHraCyekagkC 41  
                   +++ C+vC+++       + C +C  pyH +C +++g+ 
   CCE31008.1 1084 FDEVCQVCSQRSG---ACISCQQCRLPYHVECAHQQGHV 1119
                   5678999998744...569******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1285  (0.0716716); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.49
# Mc/sec: 10202.53
//
Query:       CCE31009.1  [L=438]
Description: related to serine/threonine kinase 16 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-30  105.4   0.0      2e-16   60.2   0.0    2.2  2  Pkinase         Protein kinase domain
    1.4e-09   37.6   0.0    0.00048   19.5   0.0    2.1  2  Pkinase_Tyr     Protein tyrosine kinase
    0.00077   19.5   0.4     0.0019   18.1   0.4    1.6  1  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.063   13.6   4.3       0.11   12.8   4.3    1.3  1  PTPRCAP         Protein tyrosine phosphatase receptor type C-
      0.066   12.1   6.6      0.089   11.6   6.6    1.1  1  Apt1            Golgi-body localisation protein domain
       0.18   11.4   1.1       0.28   10.8   1.1    1.2  1  GCIP            Grap2 and cyclin-D-interacting
       0.18   11.1   0.0        7.7    5.7   0.0    2.1  2  Kinase-like     Kinase-like
       0.35   11.3   9.0       0.85   10.0   9.0    1.6  1  PBP1_TM         Transmembrane domain of transglycosylase PBP1
        1.6    7.0   8.3        2.1    6.5   8.3    1.1  1  CDC45           CDC45-like protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.7e-14   3.4e-11       2     117 ..      33     164 ..      32     165 .. 0.93
   2 !   60.2   0.0     1e-19     2e-16     120     203 ..     268     365 ..     264     374 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.7e-14
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE............SSEEEEEEE--TTEBHHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee............kdelylvleyveggelad 87 
                 + l+ lGeG+f+ Vy + ++++++ +A+Kki+     ++  ++++rE++  + +   p i+  ++                 +++y++l y + g+l+d
  CCE31009.1  33 KILRLLGEGGFSYVYLVEDTTSHQLFALKKIRCPFGAESV-QQAMREVEAYRLFAhIPSIISAVDHAVAtergaaaadddaCKTVYVLLPYYRRGNLQD 130
                 67899****************************9988877.59************56999999987766699******999999*************** PP

                 HHH....HHSS--HHHHHHHHHHHHHHHHHHHHT CS
     Pkinase  88 lle....rkgslseeeakkiakqilegleylHsk 117
                 +++    ++ s++e+++  ++  ++++l+ +H+ 
  CCE31009.1 131 MINanlvNHESFPERHLMMLFLGVCKALRAMHEY 164
                 ***99999999*********************85 PP

  == domain 2  score: 60.2 bits;  conditional E-value: 1e-19
                 E-SS-SGGGEEEETTTE.EEE-SGTTSEESSSSCS..........BCTTTSCGGGS-HHHH...TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHH CS
     Pkinase 120 iHrDlKpeNiLidekge.lKitDFGlakelesssk..........ltsfvgtseYlAPEvl...keneyskkvDvWslGvilyelltgkppfsgekgk 203
                  HrD+Kp Ni+id++g    ++D+G ++      +          +  +  t  Y+APE+    +++ +++kvD+WslG++ly  l gk pf+ ++++
  CCE31009.1 268 AHRDIKPGNIMIDDSGStPILMDLGSVAPSPIAITtpslalqiqdTAAEHSTMSYRAPELFdvrTGSTIDTKVDIWSLGCTLYACLVGKSPFEMRSDE 365
                 7************77776889****9986655555567899*99999999**********999777888***********************965544 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.4e-06    0.0048       2     121 ..      33     163 ..      32     167 .. 0.86
   2 !   19.5   0.0   2.4e-07   0.00048     122     209 ..     265     362 ..     210     371 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.4e-06
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSS............EEEEEE--T CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct..keep............llivteyvk 84 
                  ++ + lGeG f+ V+  + +    ++++  a+K+++    +e+ ++ ++e++  + + + p i++ +   +  +  +            +++++ y +
   CCE31009.1  33 KILRLLGEGGFSYVYLVEDT----TSHQLFALKKIRCPFGAESVQQAMREVEAYRLFaHIPSIISAVDHAVatE--RgaaaadddacktVYVLLPYYR 124
                  56789**********98777....88999****************************8889***9987666332..2335666777888********* PP

                  TEBHHHHHHHT..CTTTSBHHHHHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr  85 gGdLlkfLrkk..ekekltlkdllsfalqvAkGmeyLes 121
                   G+L+++++++  ++e++  ++l+ + l v+k+++ +++
   CCE31009.1 125 RGNLQDMINANlvNHESFPERHLMMLFLGVCKALRAMHE 163
                  **********98889999999999999****99987765 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 2.4e-07
                  TTEEEST-SGGGEEEEE..............TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE...EEHHHHHHHHHHHHHHHHTTS CS
  Pkinase_Tyr 122 kklvHrdlaarNvLlse..............nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk...ftsksDvWsfGvllwEiftlg 202
                  +++ Hrd+   N+++++               + + i+   La +i      +++  ++  + + apE ++ ++   + +k D+Ws G +l+  +  g
   CCE31009.1 265 QSYAHRDIKPGNIMIDDsgstpilmdlgsvaPSPIAITTPSLALQI------QDTAAEHSTMSYRAPELFDVRTgstIDTKVDIWSLGCTLYACLV-G 355
                  5688************988888888877777777778888888777......55666778899******9988777799*************9887.9 PP

                  SGTTTTS CS
  Pkinase_Tyr 203 espypgl 209
                  +sp++  
   CCE31009.1 356 KSPFEMR 362
                  9999755 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.4   9.7e-07    0.0019      13     201 ..      46     299 ..      35     301 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9.7e-07
                 EEEEEETT..--EEEEEE-TT...S-HHHHHHHHHHHHHHHHTT-...B--B-C.........TTBS-EEETTEEEEEEE----EE-SS........HH CS
         APH  13 tylvttpa..gryvlrrnppa...raaeeirrevallrlLakagv...pvPevl.........agdtddeeigllfalieyvpgrsllr........kl 86 
                 +ylv++++  + ++l+ ++ +   ++ +++ rev+ +rl+a  +         +         a   dd+   ++++l++y     l +        ++
  CCE31009.1  46 VYLVEDTTshQLFALKKIRCPfgaESVQQAMREVEAYRLFAHIPSiisA----VdhavatergAAAADDDACKTVYVLLPYYRRGNLQDminanlvnHE 140
                 7888877754588888877777788999999999999998877444441....2222233333233555666669999999888888888999999966 PP

                 HHHHHHHHHHHHH..HHHCCHHCH..-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC.....HHHHHHHHHHHHHHHH--S............... CS
         APH  87 saaqlpellealg..eflaalhqvd.paalpladflaqdlellrqlesatarllaselld.....lleeleeqvlaalaallpg............... 162
                 s +++  +   lg   +l+a+h+   p+a +++   + d +++ + ++   + ++++ ++      + +++e+  ++ ++ +p                
  CCE31009.1 141 SFPERHLMMLFLGvcKALRAMHEYKpPPAERMQMGNEEDGDNNNDDDDDDDDADDEDHPPnrrgaTRGKRTEE-EEQGEQQRPLmvatlddtnttnnnn 238
                 6666666666665226788*****8666666664444333333222222222222222222224555555553.3333333333344444444458888 PP

                 .......................SS-EEEE-SS-SGGGEEEC...TTEEEEE---TT-EEEEC CS
         APH 163 .......................elptvllHgDlhpgNllvd.pddgrvtGviDfedaglgpp 201
                                           ++  H+D++pgN+++d ++ +++  + D++ + ++p+
  CCE31009.1 239 ntissststtsttsnsprnssttTKFQSYAHRDIKPGNIMIDdSGSTPI--LMDLGSVAPSPI 299
                 88888888888888888899999999****************9999999..999999988887 PP

>> PTPRCAP  Protein tyrosine phosphatase receptor type C-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   4.3   5.5e-05      0.11      28     101 ..     167     240 ..     138     262 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.5e-05
     PTPRCAP  28 sppgrWlraraedgeedeeeEdqedeedeeedsedleggeeeaesqeeeqaeseeageeqalekaeeakdeeka 101
                  p+ r + ++ edg+++++++d++d+ d e++  + +g ++ ++ +eeeq e++ +   ++l +++  ++++++
  CCE31009.1 167 PPAERMQMGNEEDGDNNNDDDDDDDDADDEDHPPNRRGATRGKRTEEEEQGEQQRPLMVATLDDTNTTNNNNNT 240
                 34556666777888877777777777777765444444444444444444444444443444333333332222 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   6.6   4.5e-05     0.089     313     413 ..     179     328 ..     156     332 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.5e-05
        Apt1 313 s.......seeddesdeesessssss.....ssssssassssssssrssslelrlkpt..........sstssssssessssssskkrsseesslessa 389
                 +       +++dd+ d+e             ++ ++++++++ +++r+         t          ++t sss+s++s++s s ++ss +++ +s a
  CCE31009.1 179 DgdnnnddDDDDDDADDEDHP----PnrrgaTRGKRTEEEEQGEQQRPLMVA-----TlddtnttnnnNNTISSSTSTTSTTSNSPRNSSTTTKFQSYA 268
                 122222211122222222222....122345333333333333333333332.....133323444555555555555555555555555556666555 PP

        Apt1 390 serv..kssr....................................asddleemksRaskym 413
                 +++   +  +                                    +  +++ m  Ra + +
  CCE31009.1 269 HRDIkpG--NimiddsgstpilmdlgsvapspiaittpslalqiqdTAAEHSTMSYRAPELF 328
                 5555440..25555566667777777777777778888888888778888888888887665 PP

>> GCIP  Grap2 and cyclin-D-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.1   0.00014      0.28     135     186 ..     158     224 ..     149     265 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00014
                 HHHHHHHHHH..............S-------------.....-----TTS--HHHHHHHHHHHHHH CS
        GCIP 135 leEmkellee..........edeeedededdldddede.....ergnqdrklseeekevikavlkll 186
                 l+ m+e ++           ed +++ d+dd+ddd+d+     +r    r  ++ee e  ++ + l+
  CCE31009.1 158 LRAMHEYKPPpaermqmgneEDGDNNNDDDDDDDDADDedhppNRRGATRGKRTEEEEQGEQQRPLM 224
                 5666666666666666666666666667777777766678899444455555555554444444444 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.026        52      11      47 ..      29      65 ..      24      85 .. 0.83
   2 ?    5.7   0.0    0.0039       7.7     208     263 ..     323     370 ..     305     379 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.026
  Kinase-like 11 ertlvrgellkkgdrsvvfevkdqetgeplavkvfll 47
                  r ++   ll++g++s v++v+d    + +a+k    
   CCE31009.1 29 RRSFKILRLLGEGGFSYVYLVEDTTSHQLFALKKIRC 65
                 67788889**********************9997655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0039
  Kinase-like 208 aPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlateeakeewkf 263
                    pEl+  r+g       ++  k+d W lG + y     k P++   +e +    +
   CCE31009.1 323 RAPELFDVRTG------STIDTKVDIWSLGCTLYACLVGKSPFEMRSDETGGT--L 370
                  55555555444......4566789***********99999**99998888776..4 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   9.0   0.00043      0.85      29      63 ..     174     208 ..     158     225 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00043
     PBP1_TM  29 rrrdddyddeyddeedDdddddeeeevprkgkkkk 63 
                   +++d d++ dd+ dDdd dde+++  r+g ++ 
  CCE31009.1 174 MGNEEDGDNNNDDDDDDDDADDEDHPPNRRGATRG 208
                 33478888877887777777777777777743332 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   8.3    0.0011       2.1     134     212 ..     177     259 ..     155     279 .. 0.35

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0011
       CDC45 134 eedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee........sddddersrkrrrsepsakklrrqlkkerrky 212
                 eed +++++ddd  ++++ ++ed+   + ++ +++k+++++++ e++        +d++ +++++ + s+ s++++   +++ r++ 
  CCE31009.1 177 EEDGDNNNDDDD--DDDDADDEDHPP-NRRGATRGKRTEEEEQGEQQrplmvatlDDTNTTNNNNNTISS-STSTTSTTSNSPRNSS 259
                 111111111111..111111111111.1122222222222222222245666443222222222222222.2222222233333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1073  (0.0598472); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 2959.00
//
Query:       CCE31010.1  [L=1150]
Description: probable alpha-mannosidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-88  295.0   0.1    8.8e-88  294.4   0.1    1.2  1  Glyco_hydro_38N  Glycosyl hydrolases family 38 N-terminal dom
    1.4e-51  175.6   0.1    2.4e-51  174.8   0.1    1.4  1  Glyco_hydro_38C  Glycosyl hydrolases family 38 C-terminal dom
    2.7e-26   91.6   0.0    5.1e-26   90.7   0.0    1.5  1  Alpha-mann_mid   Alpha mannosidase middle domain
    2.6e-10   40.3   0.0    7.6e-10   38.8   0.0    1.9  1  Glyco_hydro38C2  Glycosyl hydrolases family 38 C-terminal bet


Domain annotation for each model (and alignments):
>> Glyco_hydro_38N  Glycosyl hydrolases family 38 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.4   0.1     2e-91   8.8e-88       2     288 ..     352     614 ..     351     616 .. 0.97

  Alignments for each domain:
  == domain 1  score: 294.4 bits;  conditional E-value: 2e-91
                      EEEEEEEE--SSSSS-HHHHHCCTCHHHHHHHHHHHHHSTT--EEES-CHHHHHHHCCS-CCCHHHHHHHHHCTSEEECTT-SS-B-SSSS-HH CS
  Glyco_hydro_38N   2 vhvvpHsHiDvgWlktvdeyqrrkvqrilssvlellerdpdrkFilseaslferwweeapeekkelvkklvaegrlevvgGgwvenDealpsge 95 
                      v+ ++H+HiD++Wl++++e+ +rkv+r++ss+++l++r+p+ +F++s+a++f+++++ +p  ++++ k++v+egr++++gG+wve+D+++psge
       CCE31010.1 352 VFGIGHCHIDSCWLWPFAET-KRKVARSWSSQCDLMDRYPEAHFACSQAQQFKWLKQLYPGAFERV-KQKVNEGRFHPIGGSWVEHDTNMPSGE 443
                      899*****************.*********************************************.*************************** PP

                      HHHHHHHCCCHHHHCCH--EESEEEESSSSSB-TCHHHHHHCTT--EEEESSS-HHCHCCHHHTT-SCEEEE-TTSTEEEEEE--TT.SSHCCC CS
  Glyco_hydro_38N  96 slirqlleGqrflkeefgvrpkvaWliDpFGysatlPqllkkaGidsfltqrlsyndknkfaeqkhlefiWrgsdgteilthmlpadsydptyg 189
                      sl+rq+++Gqrf++ efg r++++Wl+D+FGys++lPql++ aG+d+f+tq+ls+n++n+f   +h++f+W ++dg+++++hm+p++    ty+
       CCE31010.1 444 SLVRQFFYGQRFFEAEFGSRCRTFWLPDTFGYSSQLPQLCRLAGMDRFMTQKLSWNNINTF---PHTTFMWVSPDGSQVMCHMPPSE----TYT 530
                      *************************************************************...*********************98....899 PP

                      CCC.GGGTTTHHHCHHHHHHCHHHHHTTSSSSEEEEEECEETHCCCCHHHHCCHHHHHHHHHHC....SSEEEEC--H.HHHHHHHHHHS...H CS
  Glyco_hydro_38N 190 fqfdfkrdenvkeraekllaqvkklaektrtnevllplGddfadgqggnteklleeinrsneke....slpkvqfgtp.seYfdalekenaefp 278
                      +++          ++ +l ++++k++++  ++ +ll++G++  dg+gg+t +++e+++r+   +    + pk+++g   +++fd+l        
       CCE31010.1 531 AEA----------DFGDLRRSISKHKTMRVDSSSLLVFGKG--DGGGGPTWQHFEKLRRCAGISntvgGVPKLKLGLSvDDFFDRLAP------ 606
                      999..........99**************************..****************98854467799******877*********...... PP

                      CE-ESSB-S- CS
  Glyco_hydro_38N 279 tkdsddfpvy 288
                        +++dfp++
       CCE31010.1 607 --KAKDFPTW 614
                      ..57888888 PP

>> Glyco_hydro_38C  Glycosyl hydrolases family 38 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.8   0.1   5.4e-55   2.4e-51       1     213 [.     788     995 ..     788     996 .. 0.97

  Alignments for each domain:
  == domain 1  score: 174.8 bits;  conditional E-value: 5.4e-55
                      XTTSS-EEEE.TTTSSEEEEESTTTS-EEE....EEEEEEEEEEECS-S-SSS--BSTT-EEEE--.S-EEECEE-SS-EEEEEEETTES...E CS
  Glyco_hydro_38C   1 leNgflkveidaknGtlksiydkeakrevlke.qvgnqfaayedapdssdaydfkpdneekplevsekeveviesgplvaevtvkfkieaesti 93 
                      l+N+ l+v +  +nG+++s+yd  ++rev+++ ++ n+f++++d+p  + a+d++ ++ +++ e++  e  + es p + ++++ +ki+++s++
       CCE31010.1 788 LQNEQLRVVV--ENGCITSLYDLINDREVVEKdGRANKFVLFDDVPIFWEAWDVEVYHLDTRRELKYGETKIHESKPHRVTLVTDIKISDQSSM 879
                      79********..99******************99*******************************************************99999 PP

                      EEEEEEE....ECCCCEEEEEEEE-TTECEEEEEEEE---TTCEEEEETTTCEEEEESSTTTT...S..SEGGGG-EEESSEEEEE-SSEEEEE CS
  Glyco_hydro_38C  94 sqeirLy....kgkkriefevkvdweekevllkvafpidiqaefatdengfgvikRptdqntsweaakfeviagnyypiqsfvdlqdesygvav 183
                      +  i+L      ++ +++ + +vdw+e+ ++lkv+fp+di +++a++e+ + ++kRpt++ntsw++akfev      ++++f+dl++++ygv++
       CCE31010.1 880 KSYISLSaalkGQQCQVDCSAEVDWHENSKFLKVEFPVDIVNTEASYETAYSITKRPTHYNTSWDMAKFEV------CCHKFADLSEHNYGVSI 967
                      9999998887577789*******************************************************......***************** PP

                      EECS-EEEEE-SSTTEEEEEEEEEBSSS-T CS
  Glyco_hydro_38C 184 lndskyGvssleqggqleLsLlRrplypdp 213
                      lndskyG+++   g  ++LsLlR+p++pd 
       CCE31010.1 968 LNDSKYGFAT--AGKLMRLSLLRAPKAPDE 995
                      **********..8***************97 PP

>> Alpha-mann_mid  Alpha mannosidase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   1.1e-29   5.1e-26       1      95 [.     621     717 ..     621     718 .. 0.94

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 1.1e-29
                     EE--GGGTSSCHHHHHHHHHHHHHHHHHHHCCTTT..-SCGC-HHHHHHHHHHHHHHHTCTTTTTT-S-HHHHHHCCHHHHHHHHHHHHHCCCCC CS
  Alpha-mann_mid   1 elhrgtfTSrarlKrlnrkleslLraaellssaaa..skgyeypkeeleelwkalllnqfHDilpGtsieeVyedaeerlaealkelekllesal 93 
                     elhrgt+T++a++K lnrk+e lLr++e+l++  +  + +y+yp+ +++ +w+++ll+qfHD+lpG+sie++y++ ++ +ae++ ++ekll++ +
      CCE31010.1 621 ELHRGTYTTQANNKMLNRKSEVLLRSIEQLATIVSieNSKYKYPSADIDGMWEKVLLCQFHDCLPGSSIEMCYDESDKFYAEVFTTGEKLLKELY 715
                     79******************************4336789***************************************************99877 PP

                     CC CS
  Alpha-mann_mid  94 rk 95 
                     + 
      CCE31010.1 716 KF 717
                     65 PP

>> Glyco_hydro38C2  Glycosyl hydrolases family 38 C-terminal beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.7e-13   7.6e-10      12      69 .]    1085    1147 ..    1060    1147 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.7e-13
                       TT--EEEEEEESSSSSBEEE-EETT.SCEEEEE-TTSSB-.........-TTSEEXTTXEEEEE CS
  Glyco_hydro38C2   12 deddlllRlynlseegedatlslsqpvksvnvknllEttlape......eleielkPmEIrTfi 69  
                       ++++++lR+y+  ++ ++ t+++s +vk v+++ +lE++l +e       ++i+l+P+E++T++
       CCE31010.1 1085 KGQSIILRVYEALGGHSRGTIKTSYNVKYVSKVSILEDEL-EEvalgdgGFDIKLRPFEVATYK 1147
                       489*************************************.44699999*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 7844.50
//
Query:       CCE31011.1  [L=958]
Description: related to MUTS protein homolog 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-70  236.2   0.0    6.4e-70  235.0   0.0    1.6  1  MutS_V    MutS domain V
    3.1e-45  154.7   5.8      6e-45  153.8   5.8    1.5  1  MutS_III  MutS domain III
    2.7e-21   75.9   0.0    6.3e-21   74.7   0.0    1.7  1  MutS_I    MutS domain I
    4.2e-09   36.8   0.0    1.6e-08   34.9   0.0    1.9  2  MutS_II   MutS domain II
  ------ inclusion threshold ------
      0.061   13.1   0.0       0.14   12.0   0.0    1.5  1  AAA_29    P-loop containing region of AAA domain
       0.33   11.4   1.0       0.95    9.9   0.0    2.0  2  AAA_23    AAA domain


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.0   0.0   2.1e-73   6.4e-70       1     186 [.     760     955 ..     760     957 .. 0.93

  Alignments for each domain:
  == domain 1  score: 235.0 bits;  conditional E-value: 2.1e-73
                 EEEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHHH CS
      MutS_V   1 llitGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlaia 99 
                 +litGpnmaGkst+lrq+ali++laqiG++vpa++aei++vd+if+Rvg++Ddl +++stFmvEmlEta+il++at +s+vi+DE+GRGt+ +dG+a++
  CCE31011.1 760 WLITGPNMAGKSTFLRQNALITILAQIGCYVPASYAEIGVVDAIFSRVGSADDLFRDQSTFMVEMLETAQILRQATPRSFVIMDEIGRGTTPEDGTAVS 858
                 69************************************************************************************************* PP

                 HHHHHHHHHTT--EEEEEES-GGGGGHHHH...STT.......EEEEEEEEEEET.TEEEEEEEEEES--SS--HHHHHHHTT--HHHHHHHHHHHHH CS
      MutS_V 100 lavaeyllekikaktlfatHyheltklaek...lee.......vknlhlavkeee.edivflykvkegaaeksyGikvaklaglPesvverArevlke 186
                 +a++++l++ ++++tlfatH+h++++la++     e       v+++  + +e++   +v+++k+++g++++s+ +kva lag+Pe+ ++ Ar+vl++
  CCE31011.1 859 YACLHHLVTVNQCRTLFATHFHKVADLAAAdglS-EddgrrgsVQHYCTDLEEDKeGGFVYVHKLRRGINRQSHALKVAGLAGVPERAIAIARQVLEQ 955
                 *************************999874431.24455555999999988766478************************************9876 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.8   5.8     2e-48     6e-45       1     191 []     351     704 ..     351     704 .. 0.97

  Alignments for each domain:
  == domain 1  score: 153.8 bits;  conditional E-value: 2e-48
                 HHHHHTTSSS-TTS.SSSS-HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHH.T..TT.HHHHHHHHTT---HHHHHHHHHTT---HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III   1 aTlrnLeilenlrggskegsLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVee.leneelreelrellrrlpDleRllsrislgkakardlk 98 
                 ++lr+Lei++++r+g  +gsLl++++rTvT++GaRlL+ wl++P+++l+ InaR+++V   +  e+lr+++  llrr++D +Rl++++s g+++a++l+
  CCE31011.1 351 NSLRALEITKTIRDGLFRGSLLHAIRRTVTKSGARLLQAWLSSPSISLDAINARQNLVGQfIAMEHLRDSIIVLLRRCHDSQRLVQKFSMGRGDADELL 449
                 79*******9999995599****************************************88999*********************************** PP

                 HHHHHHHHHHTTTTT---SSTHHHHH........................HHHHHHHHHHB-SS--SSGGGS--B-T...................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxx...................... RF
    MutS_III  99 allealkaleelvallekeklaesee........................eslaelleeaideeplalekegedlra...................... 151
                  l+++++a++++v+ l++e+                               +la++++++idee+  +++e+++++a                      
  CCE31011.1 450 DLAHTIRATKDIVDMLNDESH----VgpsrhgsqndcfkalslridltgpLALAQRIKDSIDEEGVVHQHEVQESEAeqmmalaqdviqkegseddala 544
                 ***************976654....133579************99998776678********************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
    MutS_III 152 ................................................................................................... 151
                                                                                                                    
  CCE31011.1 545 vvpkskkkraspakeddaeeseswimkpsasaglkslhsqlrsrlnekvelrdslrkelnvqtlnlrwssslghyahvrgtkdlknlvdvrtisaskst 643
                 *************************************************************************************************** PP

                 .....................HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH CS
                 .....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 152 .....................iealeqelfqelleeveealerlrrlaealaeLDvllSlA 191
                                      i+++eq+lfq+l+e+v+ +l +lrr+a++l+eLD+ +S+A
  CCE31011.1 644 ksifipewtalggsldrirtdIRNAEQALFQSLREQVVLNLVKLRRNAAVLDELDITTSFA 704
                 *************************************999********************9 PP

>> MutS_I  MutS domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   2.1e-24   6.3e-21       4     112 ..      60     173 ..      57     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 2.1e-24
                 HHHHHCCCHH-TTCEEEEEETTEEEEECHHHHHHHHHCSSSSTT.ESSSSC.EEEEEEEHHHHHHHHHHHHHT.T-EEEEEEE-S-HHHH.....S.S- CS
      MutS_I   4 mkqylelkkkykdavlffrvGdfYelfgeDAviaareleitltkrkkssekeipmagvPehalekylrkLvek.gykVavveqtetpaek.....kgvv 96 
                  +q ++  +k +++vl+ rvG fYel++e A+ +  +l++++ ++k  ++  +pmag+P  +l++yl+ Lv+  +  Vav+e   ++ e      + ++
  CCE31011.1  60 VQQAWQNMRKFENCVLLTRVGGFYELYYEHAEEYGPLLNLKVASKKLAAGR-VPMAGFPFFQLDRYLKILVQDmQRHVAVCEEFPKSLEDsarhgEPMF 157
                 4666666667*********************************99998887.********************76*********97777665554445** PP

                 -EEEEEEEBTTC-TTS CS
      MutS_I  97 krevvrviTpGtltde 112
                 +r+v+r+iTpGtl+de
  CCE31011.1 158 DRRVARIITPGTLIDE 173
                 *************997 PP

>> MutS_II  MutS domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   5.5e-12   1.6e-08      12      61 ..     215     264 ..     209     283 .. 0.84
   2 ?   -2.8   0.0       2.3   6.9e+03     111     130 ..     310     329 ..     302     335 .. 0.73

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 5.5e-12
                 TSE.EEEEEEETTTTEEEEEEEEE-HHHHHHHHHH-ESEEEEESS-SCCCH CS
     MutS_II  12 grr.vGlafiDlstgefvvsefedfeeleaeLsrlsPkElllpedlsesta 61 
                 + + vGla++Dlstg f+++ + d + l ++L+r++P+E++l+ d ++++ 
  CCE31011.1 215 ACSpVGLAWLDLSTGHFFTQAT-DLSSLPSTLTRIGPREVVLSADIESQQD 264
                 45569***************87.7**********************99865 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHHCCCCCSC CS
     MutS_II 111 klalaAlgalisYleetqke 130
                   +++A + +++Y+++  + 
  CCE31011.1 310 SEEVSAGNLALNYVKDKLQG 329
                 45678888999999987766 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.6e-05      0.14      22      39 ..     756     774 ..     748     785 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
      AAA_29  22 kg.atlltGpsGsGKSTll 39 
                 +g + l+tGp+ +GKST+l
  CCE31011.1 756 DGlVWLITGPNMAGKSTFL 774
                 46788************98 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3      0.81   2.4e+03     153     176 ..     552     603 ..     490     631 .. 0.52
   2 ?    9.9   0.0   0.00032      0.95      23      37 ..     761     775 ..     753     784 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.81
      AAA_23 153 e............................rleelekeleeledekkllekle 176
                 +                               +l+  l+e+ + ++ l+k++
  CCE31011.1 552 KraspakeddaeeseswimkpsasaglksLHSQLRSRLNEKVELRDSLRKEL 603
                 1223333334444455555555555333222334444455555555555443 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00032
      AAA_23  23 lItGpNGaGKTTild 37 
                 lItGpN aGK+T+l+
  CCE31011.1 761 LITGPNMAGKSTFLR 775
                 9***********994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (958 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 6752.11
//
Query:       CCE31012.1  [L=313]
Description: 60S acidic ribosomal protein P0 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-22   79.2   0.1    4.8e-22   78.0   0.1    1.5  2  Ribosomal_L10  Ribosomal protein L10
    3.1e-21   75.1   0.0    6.1e-21   74.2   0.0    1.5  1  RL10P_insert   Insertion domain in 60S ribosomal protein L10P
    2.9e-20   72.6   7.8      3e-20   72.6   5.6    2.0  2  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> Ribosomal_L10  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.1   8.1e-26   4.8e-22       4      95 ..       6     100 ..       4     104 .. 0.92
   2 ?   -3.6   0.0       2.1   1.3e+04      58      81 ..     247     273 ..     243     278 .. 0.53

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 8.1e-26
                    CCHCCCCCCCCCCCTTSSEEEEEE-TTS-HHHHHHCCCHHHHHGCEEEEESCCCCCCCCHCCTSS.S....SCGCCSSSEEEEEESS-TCHHHHCC CS
  Ribosomal_L10   4 ekKeelvkelkellkkyksvvvvdyegltvaqlqelRkklrengaelkvvKntlmrrAleetgeeek....lkellkgpvalvftnedpvalakvl 95 
                    ++K+ ++++lk ll++y+sv+vv +++++++q++e+R +lr++ + + ++Knt++rrAl++  ++      l +++kg+v++vftn+d +++ ++l
     CCE31012.1   6 ANKAGYFDKLKGLLEEYRSVFVVAIDNVSSQQMHEIRHSLRNQ-GVVLMGKNTMVRRALKTFIADTPeyerLLPFVKGNVGFVFTNGDLKEIRDKL 100
                    789**************************************99.*****************999852477799*****************998876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.1
                    CCCCCHCCTSS.S...SCGCCSSSEEE CS
  Ribosomal_L10  58 mrrAleetgeeek...lkellkgpval 81 
                    +  A+e+   + +   lk+ +++p a+
     CCE31012.1 247 LAVAIETDFSWPEieqLKDRIANPDAY 273
                    555555544442123466666666555 PP

>> RL10P_insert  Insertion domain in 60S ribosomal protein L10P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.0     1e-24   6.1e-21       1      71 []     109     178 ..     109     178 .. 0.99

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 1e-24
  RL10P_insert   1 AraGtiAtedviipagplelaPgsiepeLrklglptklkkGkivleedylvckkGetltseqaqlLklLgi 71 
                   AraG++A+ dv++pag+++++Pg++ +++++lg+ptk+ +G+i++++d +++++  ++++++a+lL++L+i
    CCE31012.1 109 ARAGAVAPVDVWVPAGNTGMEPGKT-SFFQALGVPTKIARGTIEITTDLKLVEAKAKVGPSEATLLNMLNI 178
                   9************************.*******************************************98 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.4   2.4e+03      43      58 ..      97     113 ..      87     118 .. 0.49
   2 !   72.6   5.6   5.1e-24     3e-20       2      88 .]     230     312 ..     229     312 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.4
                    XXXXX.XXXXXXXXXXX CS
  Ribosomal_60s  43 aakla.aaaaaaaaaaa 58 
                    + kl+  ++aa+a a+a
     CCE31012.1  97 RDKLLsNRVAAPARAGA 113
                    33443333344443333 PP

  == domain 2  score: 72.6 bits;  conditional E-value: 5.1e-24
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--SS--.STTT CS
  Ribosomal_60s   2 ptaenikkvlkaagveveaarvkllvkalegkdieellangaaklaaaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedddmG.fgLF 88 
                    pt  ++ +++ +++++v+a+++++++++ e +++++ +an+ a+   aaaa+ aaa+a++aaa+aee+kk+eee  ee+dd+G +gLF
     CCE31012.1 230 PTLPSVMHSVVNSYKKVLAVAIETDFSWPEIEQLKDRIANPDAY---AAAAPVAAAGASSAAAPAEEAKKDEEE--EEEDDEGfGGLF 312
                    8999**************************************99...668899999999999999999999887..677777777999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      655  (0.036533); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2517.29
//
Query:       CCE31013.1  [L=581]
Description: related to tRNA-methyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.22   12.1   5.1       0.65   10.6   0.1    2.6  2  Phostensin  Phostensin PP1-binding and SH3-binding region
       0.26    9.6   5.6       0.45    8.8   5.6    1.3  1  Menin       Menin


Domain annotation for each model (and alignments):
>> Phostensin  Phostensin PP1-binding and SH3-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.4     0.024   2.2e+02      47      90 ..      50      93 ..       7     133 .. 0.76
   2 ?   10.6   0.1   7.3e-05      0.65      19      73 ..     239     290 ..     227     329 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.024
  Phostensin 47 galq.saansepkseeteeeeeaselseadaalkttlKkryptve 90
                +a q  +++s+p+++++ + + a  +seada++ + + kr  t+e
  CCE31013.1 50 NASQpQQKDSKPRNDDN-TATVAVAASEADAEASEPPAKRQKTAE 93
                33332455555555544.444444556778888887888877776 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 7.3e-05
  Phostensin  19 pkpaaPskaselqkrggntftvvPkrkkgalqsaansepkseeteeeeeaselse 73 
                 p  ++P+   +l +   nt+tv  kr ++al+  +++++++e++++ +e  ++++
  CCE31013.1 239 PPTTIPGP--KLAEPAANTLTVHSKRNRAALE-HQRKQIEAEKAKAARESDKSAD 290
                 45677888..89999***********888888.5566666666665555555443 PP

>> Menin  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.6   5.1e-05      0.45     524     624 ..      49     158 ..      36     169 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 5.1e-05
       Menin 524 aeqkqkkageeserreannnnnsksnsekeadkk......asttsnggeasstpssesea..avespsehkeakleeks.qelasappaavddydefei 613
                 a+  q ++ +++ r+++n    + ++se +a+ +      + t+ + ++a+s+ +s++ +  +ve  +e++ a+++ k+  ++ s+ p+  d+    ++
  CCE31013.1  49 ANASQPQQKDSKPRNDDNTATVAVAASEADAEASeppakrQKTAEREDTANSALDSSTAEkgKVERAEEKNGANQQGKRkGKKQSKGPSHGDNSRMGKV 147
                 4444333333333333333444444555555555334433334444444444333333330133333334445555554345667778867775556** PP

       Menin 614 mlkrPvitlys 624
                 ++ rPvitl +
  CCE31013.1 148 VVDRPVITLMT 158
                 ********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1101  (0.0614089); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4026.00
//
Query:       CCE31014.1  [L=414]
Description: probable YDJ1-mitochondrial and ER import protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-37  126.4   0.1    1.2e-36  126.0   0.1    1.1  1  DnaJ_C          DnaJ C terminal domain
    2.8e-25   88.2   4.4      5e-25   87.4   4.4    1.4  1  DnaJ            DnaJ domain
      9e-15   54.8  18.5    1.5e-14   54.1  18.5    1.4  1  DnaJ_CXXCXGXG   DnaJ central domain
  ------ inclusion threshold ------
        1.6    8.8  11.2        8.4    6.5   4.6    2.5  2  HypA            Hydrogenase/urease nickel incorporation, meta
        1.6    8.7  18.8        1.5    8.9   6.9    2.8  2  Anti-TRAP       Tryptophan RNA-binding attenuator protein inh
          4    7.8   8.2         29    5.0   0.0    3.6  4  zinc_ribbon_9   zinc-ribbon


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.1     4e-40   1.2e-36       1     148 []     121     341 ..     121     341 .. 0.95

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 4e-40
                 EEEEEEE-HHHHHH-.EEE.EEEE..........................................................................T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................xxxxx RF
      DnaJ_C   1 ieveleisleelykGktkkikikrnvi...................................................................kkekk 32 
                 i+++ ++sle++y+Gk  k++++r  i                                                                   ++++k
  CCE31014.1 121 IHHTHKVSLEDIYRGKISKLALQRSIIcpkcdglggkegavkkcpgcdghgmktmmrqmgpmiqrfqtvcpdcngeceiikdkdrckqcmgkktIVDRK 219
                 68999*******************999*****************************************************************9988888 PP

                 EEEEEE-TT--TT-EEEETT-SSSS...S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-S.S-EEEEEE.....--TT-EEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.....xxxxxxxxxxx RF
      DnaJ_C  33 tlevkipaGikdgqkirlegeGdeeg.gepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptl.dgkvklki.....tqpgevlrikg 124
                 +l+v++++G+++g+k+ ++geGd+ + +++GD++++i++kph +F+rk++dl++++ei+l++al Gg++ ++ l d+  +++i     + +++v+ ++g
  CCE31014.1 220 VLHVHVDKGVRSGTKVEFRGEGDQAPgVQAGDVVFEIEQKPHARFTRKEDDLLYKCEIELVTALAGGTIYIEHLdDRWLSIDIlpgeaIAQDSVKLVRG 318
                 9**********************8888**************************9999**************999555566777777779999******* PP

                 -S-EET...TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C 125 kGmpklkkpgkrGdlyvevkvefP 148
                 +Gmp+ + ++++G+ly++++++fP
  CCE31014.1 319 QGMPSFR-HHHHGNLYINFNIKFP 341
                 ******8.***************9 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   4.4   1.7e-28     5e-25       1      63 []       6      68 ..       6      68 .. 0.99

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 1.7e-28
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +yY+ Lgv+++a+e+e+kkaY+  alkyHPDkn+++p ae+kFke+++Aye+Lsd++kR++YD
  CCE31014.1  6 KYYDTLGVAPTATEQELKKAYKVNALKYHPDKNAHNPAAEDKFKEVSHAYEILSDSQKRQIYD 68
                59************************************************************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1  18.5   5.1e-18   1.5e-14       1      67 []     148     213 ..     148     213 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 5.1e-18
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgkkktCktCkGsG.vvreeqktlgpfvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C+kC+G g k+g++k+C+ C+G+G +++++q  +gp++q++q+ Cp+C+G+ ++ik+kd+Ck+C Gk+
     CCE31014.1 148 CPKCDGLGGKEGAVKKCPGCDGHGmKTMMRQ--MGPMIQRFQTVCPDCNGECEIIKDKDRCKQCMGKK 213
                    ************************4455555..9********************************86 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.5     0.005        15      69      99 ..     144     174 ..     136     180 .. 0.81
   2 ?    6.5   4.6    0.0028       8.4      68      99 ..     185     215 ..     178     227 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.005
                 -EEEETTTS-EEECHHHHHS-TTTSSS-EEE CS
        HypA  69 vkvrCreCgkefeleekalrCpkCgsadvei 99 
                  ++ C +C+  + +e +  +Cp C+++++++
  CCE31014.1 144 RSIICPKCDGLGGKEGAVKKCPGCDGHGMKT 174
                 5789****988887765678*****998875 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0028
                 --EEEETTTS-EEECHHHHHS-TTTSSS-EEE CS
        HypA  68 pvkvrCreCgkefeleekalrCpkCgsadvei 99 
                 + ++ C +C+ e e+ +++ rC++C ++++ i
  CCE31014.1 185 RFQTVCPDCNGECEIIKDKDRCKQCMGKKT-I 215
                 67899*********7776789****99764.4 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.9    0.0005       1.5      13      41 ..     148     172 ..     143     180 .. 0.91
   2 ?    4.7   4.0    0.0097        29      10      42 ..     187     215 ..     176     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0005
                 -TTTTTTSEETTE......E-TTTTTSSE CS
   Anti-TRAP  13 CdaCngsGkiepeeprasleCPkCsGkgl 41 
                 C++C+g G  e++      +CP C G+g+
  CCE31014.1 148 CPKCDGLGGKEGA----VKKCPGCDGHGM 172
                 *********9999....789*******97 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0097
                 EEE-TTTTTTSEETTE......E-TTTTTSSEE CS
   Anti-TRAP  10 EtkCdaCngsGkiepeeprasleCPkCsGkgli 42 
                  t C+ Cng  +i  +       C +C Gk+ i
  CCE31014.1 187 QTVCPDCNGECEIIKD----KDRCKQCMGKKTI 215
                 689********99988....447*******988 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0097        29      18      29 ..     143     153 ..     136     155 .. 0.76
   2 ?    0.9   0.2      0.19   5.7e+02      23      29 ..     163     169 ..     157     171 .. 0.77
   3 ?    4.7   0.1     0.012        36      22      29 ..     188     195 ..     179     196 .. 0.78
   4 ?   -3.8   0.1       5.8   1.7e+04      19      28 ..     202     210 ..     201     211 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0097
  zinc_ribbon_9  18 edsdvlCPhCgg 29 
                    + s++ CP C+g
     CCE31014.1 143 QRSII-CPKCDG 153
                    44556.****98 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.19
  zinc_ribbon_9  23 lCPhCgg 29 
                     CP C+g
     CCE31014.1 163 KCPGCDG 169
                    5****98 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.012
  zinc_ribbon_9  22 vlCPhCgg 29 
                    ++CP+C+g
     CCE31014.1 188 TVCPDCNG 195
                    45*****8 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 5.8
  zinc_ribbon_9  19 dsdvlCPhCg 28 
                    d d  C +C 
     CCE31014.1 202 DKDR-CKQCM 210
                    5566.99995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3080.90
//
Query:       CCE31015.1  [L=819]
Description: related to Tip elongation protein 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-16   58.5   0.7      1e-15   57.5   0.7    1.5  1  CAP_GLY          CAP-Gly domain
    8.7e-07   28.7  10.6    0.00019   21.2   1.6    2.4  2  CLIP1_ZNF        CLIP1 zinc knuckle
     0.0051   16.2   8.1       0.67    9.3   0.0    3.2  3  FAM76            FAM76 protein
     0.0071   16.3   6.3     0.0071   16.3   6.3    3.1  3  YscO             Type III secretion protein YscO
  ------ inclusion threshold ------
       0.04   14.0  10.7       0.72    9.9   1.3    3.3  3  DUF1664          Protein of unknown function (DUF1664)
       0.05   13.8   2.0        0.2   11.8   0.2    2.4  2  COG5             Golgi transport complex subunit 5
       0.14   11.1  23.0       0.82    8.5   4.8    3.4  4  Spc7             Spc7 kinetochore protein
       0.16   11.8  16.8      0.046   13.6   2.3    3.1  3  DUF724           Protein of unknown function (DUF724)
       0.16   10.3  20.9     0.0062   15.0  12.5    2.2  2  MAD              Mitotic checkpoint protein
       0.24   11.3   5.3          4    7.3   0.2    2.8  3  Glutaredoxin2_C  Glutaredoxin 2, C terminal domain
       0.26   11.4   5.5      0.076   13.2   0.7    2.4  2  DUF305           Domain of unknown function (DUF305)
        0.3   11.6   4.1         11    6.6   0.1    3.2  3  NPV_P10          Nucleopolyhedrovirus P10 protein
       0.32    9.8  23.3       0.11   11.3  13.6    2.8  3  DUF812           Protein of unknown function (DUF812)
       0.98    8.0  13.9       0.14   10.8   3.7    2.5  3  AAA_13           AAA domain
        1.3    9.4  25.7        2.3    8.6   0.9    4.5  3  HrpB7            Bacterial type III secretion protein (HrpB7)
        1.3    7.1  16.2        0.3    9.2   0.4    2.7  3  EzrA             Septation ring formation regulator, EzrA
        2.2    8.6   4.0         34    4.8   0.2    3.1  3  DUF948           Bacterial protein of unknown function (DUF94
        3.1    8.1   8.6        1.5    9.1   0.1    3.5  4  DUF5082          Domain of unknown function (DUF5082)
        3.4    7.8   9.2         13    6.0   2.6    3.4  4  Fib_alpha        Fibrinogen alpha/beta chain family
        4.1    7.1  16.2       0.92    9.2   0.8    3.5  3  DUF745           Protein of unknown function (DUF745)
        5.4    6.5  19.2       0.27   10.8   3.8    3.3  3  MscS_porin       Mechanosensitive ion channel porin domain
        5.5    6.8   5.2         22    4.9   0.2    2.7  3  zf-CCHC_4        Zinc knuckle
        6.8    6.2   6.1         26    4.3   0.7    2.8  2  Fzo_mitofusin    fzo-like conserved region
        7.8    6.6   9.9        8.4    6.5   0.2    3.3  3  XLF              XLF-Cernunnos, XRcc4-like factor, NHEJ compo
        9.5    6.6  14.1        1.2    9.4   0.9    3.5  3  BLOC1_2          Biogenesis of lysosome-related organelles co


Domain annotation for each model (and alignments):
>> CAP_GLY  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.7   1.4e-18     1e-15       1      64 [.     107     174 ..     107     175 .. 0.90

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 1.4e-18
     CAP_GLY   1 vgdrvklkegrrGvvryvGpvpfakgewvGveldep...nGkndGsvkgkrYFeck.pnrGvFvrpek 64 
                 +gd v++++g  G+vr+vG+v+++kg+++G+el  +   +Gkn+G v+g  YF+++ p++G+Fv+ +k
  CCE31015.1 107 IGDAVDVPGGMSGTVRFVGTVQGKKGTFAGIELHPEfaaKGKNNGDVDGISYFDTSvPGSGIFVPVSK 174
                 69999999*************************8434559*************97669******9887 PP

>> CLIP1_ZNF  CLIP1 zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   2.0   0.00018      0.13       2      15 ..     700     713 ..     700     715 .. 0.88
   2 !   21.2   1.6   2.7e-07   0.00019       2      17 .]     798     813 ..     798     813 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00018
   CLIP1_ZNF   2 pYCdnCEvFGHdTe 15 
                 ++C++CE  GHd+ 
  CCE31015.1 700 LWCEICETSGHDIL 713
                 7**********986 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2.7e-07
   CLIP1_ZNF   2 pYCdnCEvFGHdTedC 17 
                 ++C++CE++GHd  dC
  CCE31015.1 798 KWCAICERDGHDSVDC 813
                 7************999 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00093      0.67     223     259 ..     350     386 ..     297     393 .. 0.87
   2 ?    4.3   0.8      0.03        22     237     296 ..     410     469 ..     398     473 .. 0.74
   3 ?    5.3   0.6     0.015        11     199     271 ..     576     647 ..     498     653 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00093
       FAM76 223 qLkeeiaslkkqleqkdqellekdkkitelkaellek 259
                  ++ee+++l+ qle +dq+l e+  +++e+ + l+e 
  CCE31015.1 350 AIEEEMERLRSQLEDRDQQLREQANTLAEMESSLVEL 386
                 579***************************9987765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.03
       FAM76 237 qkdqellekdkkitelkaellekekelreklkelekeakekieklekkirellkevaels 296
                 q   +l ek+ ki++l++e   ++++ r+ + +le  ++e+    ek+++el+ ev el+
  CCE31015.1 410 QLRAMLREKNDKISMLTSEFDAHRADFRSTIDTLEMASTETERVYEKRMEELIGEVRELE 469
                 444567788888888888888888888888888888888888888888888887777665 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.015
       FAM76 199 ekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkele 271
                  +++++   + +     d   + + L+ +ia+l+  l++k++   e +++++++++ +++++ +  ++ ++++
  CCE31015.1 576 RTPTQGP-DSFMMNDGEDGKAVREGLERHIAELQTLLDKKNSREEELEQELAAVRGANFSTNPNSAHRSSQRD 647
                 2222222.224444445555556789**********************************9999988877765 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   1.7      0.19   1.4e+02      84     120 ..     339     375 ..     331     392 .. 0.57
   2 !   16.3   6.3   9.9e-06    0.0071      37     131 ..     436     531 ..     409     540 .. 0.85
   3 ?    0.2   0.5      0.89   6.4e+02      67      96 ..     599     628 ..     594     647 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  84 elekqveeakqqleaerealrqarkelqearraveKf 120
                 +l   v +a++  e+e e+lr++ +   +  r+++  
  CCE31015.1 339 NLRRPVSRANAAIEEEMERLRSQLEDRDQQLREQANT 375
                 5555555555556666665555555555555554432 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 9.9e-06
                 HHHHHHHHHHHHHHHHHHHHHHHTTT-.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  37 resladyrawraqeearlyaeiigklv.llkelekvkqqvalLrekeaelekqveeakqqleaerealrqarkelqearraveKfaelarlvraea 131
                  +s  d  + +  e +r+y++ +++l+ +++ele+ +  v +   + ++le+ v+e+++ le +r+  ++ar e++  r +ve+ + + +++r+ a
  CCE31015.1 436 FRSTIDTLEMASTETERVYEKRMEELIgEVRELEARNFDVDSVASQLRQLEELVQELEEGLEDARRGEAEARGEVEFLRGEVERTKTELDREREKA 531
                 455556667788999***********9569*******99999999999999999999999999999999999999999999999998888888765 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.89
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  67 elekvkqqvalLrekeaelekqveeakqql 96 
                  le+  ++++ L +k +++e+++e+  + +
  CCE31015.1 599 GLERHIAELQTLLDKKNSREEELEQELAAV 628
                 566666777777777777777776654444 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   1.5     0.012       8.3      44      97 ..     338     391 ..     331     425 .. 0.77
   2 ?    9.9   1.3     0.001      0.72      49     122 ..     421     494 ..     408     497 .. 0.84
   3 ?    1.1   0.0      0.53   3.8e+02      59      94 ..     595     630 ..     590     640 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.012
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredls 97 
                 +++ + + +  +++++  ++L s+++  d++l eq+++ +e+++ + e+++ ++
  CCE31015.1 338 ANLRRPVSRANAAIEEEMERLRSQLEDRDQQLREQANTLAEMESSLVELQGLIE 391
                 555556666777788888888888888888888888888888888888776655 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.001
     DUF1664  49 qleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 ++  + ++  a + ++ s id+++    e++++ ++  ee+    ++l++ + dv+sv +  ++le+ ++++ee
  CCE31015.1 421 KISMLTSEFDAHRADFRSTIDTLEMASTETERVYEKRMEELIGEVRELEARNFDVDSVASQLRQLEELVQELEE 494
                 667788899999************99999988887777777777778999999************999999985 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.53
     DUF1664  59 atkrhLssridrvdkkldeqkeiskeikeevtevre 94 
                 a+++ L+++i+++++ ld+ +   +e+++e+++vr+
  CCE31015.1 595 AVREGLERHIAELQTLLDKKNSREEELEQELAAVRG 630
                 56888999**********************999986 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00028       0.2      27      82 ..     336     391 ..     325     393 .. 0.90
   2 ?    0.6   0.1      0.85   6.1e+02      55      93 ..     456     494 ..     416     526 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00028
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  27 teldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslssvlselkssle 82 
                 + + l  p++r n +i+e  +rlr+++ ++ ++L e++++ ++ +s+l el++ +e
  CCE31015.1 336 SVANLRRPVSRANAAIEEEMERLRSQLEDRDQQLREQANTLAEMESSLVELQGLIE 391
                 56778899***************************************999998665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.85
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX- CS
        COG5  55 snhleLlehlskskslssvlselksslesLsasyerlks 93 
                 ++ +eL+ ++++ +  +  ++++ s+l +L++ ++ l++
  CCE31015.1 456 KRMEELIGEVRELEARNFDVDSVASQLRQLEELVQELEE 494
                 555566666666555555666666666666666655554 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.2    0.0013      0.96     191     237 ..     345     391 ..     324     396 .. 0.58
   2 ?    8.1   7.3    0.0015       1.1     156     258 ..     413     518 ..     397     534 .. 0.64
   3 ?    8.5   4.8    0.0011      0.82     143     221 ..     453     530 ..     447     558 .. 0.86
   4 ?    2.7   0.1     0.068        49     156     187 ..     598     629 ..     588     642 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0013
        Spc7 191 eelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekie 237
                    ++  +ee+e lr++l++ +++++e+ + lae+++ l el+  ie
  CCE31015.1 345 SRANAAIEEEMERLRSQLEDRDQQLREQANTLAEMESSLVELQGLIE 391
                 33334445566666666666666666666666666666655555444 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0015
        Spc7 156 elLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelael...kaeieekkkelaelqeqleeleekieelkeqkseleeeia 251
                 ++L +++++++ l  e+++++a+ ++++++l+ a++e e + ++++eel  e++el   + ++++   +l +l+e ++elee +e+++   +e++ e++
  CCE31015.1 413 AMLREKNDKISMLTSEFDAHRADFRSTIDTLEMASTETERVYEKRMEELIGEVRELearNFDVDSVASQLRQLEELVQELEEGLEDARRGEAEARGEVE 511
                 567777788888888888888888888888888888877777777777665544440004566666666666666666666666666666665555555 PP

        Spc7 252 eaervle 258
                   +  +e
  CCE31015.1 512 FLRGEVE 518
                 4443333 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0011
        Spc7 143 gleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkke 221
                 ++e+++e+l  + ++Le+++  +d++  +l++  +el +ele+  e a+  e+  + e+e lr e+++ k+e+++ +++
  CCE31015.1 453 VYEKRMEELIGEVRELEARNFDVDSVASQLRQ-LEELVQELEEGLEDARRGEAEARGEVEFLRGEVERTKTELDREREK 530
                 67899999********************9986.567777777777778889999******************9976654 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.068
        Spc7 156 elLekqeeeldellpeleeekaeleeeleklq 187
                 e Le++ +el++ll++ +++++ele+el+  +
  CCE31015.1 598 EGLERHIAELQTLLDKKNSREEELEQELAAVR 629
                 67888999999999999999999999987765 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   2.5     0.023        17     105     183 ..     349     431 ..     335     440 .. 0.70
   2 ?   13.6   2.3   6.4e-05     0.046      66     171 ..     454     566 ..     434     577 .. 0.75
   3 ?    1.1   0.1      0.43   3.1e+02     131     163 ..     596     628 ..     584     650 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.023
      DUF724 105 tklleerkklekkieeeesekrkleeeidelekkilelerqlallk....ekkeaadkeiarlkseaekleeeledveqeFea 183
                 + ++ee+++l +++e+ +++ r+  + ++e+e+  +el+   +       ++ + +dk+ a+l++  ++ +++++   +eF+a
  CCE31015.1 349 AAIEEEMERLRSQLEDRDQQLREQANTLAEMESSLVELQGLIENSDvpglRRSSLDDKDSAQLRAMLREKNDKISMLTSEFDA 431
                 45667777777777777777777777777777777777765554447788777777777788888888888888877777776 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.4e-05
      DUF724  66 srseleslkeslaeLekhGFdVkalqsrlnkLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallk.............e 151
                  ++ +e+l+ ++ eLe+  FdV ++ s+l++L +l +e ++ le  ++ e + +       ++e    e+e++  el r+++ +              +
  CCE31015.1 454 YEKRMEELIGEVRELEARNFDVDSVASQLRQLEELVQELEEGLEDARRGEAEARG------EVEFLRGEVERTKTELDREREKAGvngaphgdqgnpsK 546
                 56789999*********************99999988887777777775555444......44555577777777777777766577888888888888 PP

      DUF724 152 kkeaadkeiarlkseaekle 171
                 + e+++ ei  lk+  ++l+
  CCE31015.1 547 ELEQKEDEIRGLKAIIHSLS 566
                 88888888888887766665 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.43
      DUF724 131 eidelekkilelerqlallkekkeaadkeiarl 163
                   + le+ i+el++ l+ + +++e+ ++e+a++
  CCE31015.1 596 VREGLERHIAELQTLLDKKNSREEELEQELAAV 628
                 455678888888888887777777777777665 PP

>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0  12.5   8.7e-06    0.0062      55     241 ..     335     528 ..     313     536 .. 0.71
   2 ?   -0.0   1.2       0.3   2.2e+02     403     472 ..     548     622 ..     540     652 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.7e-06
         MAD  55 krikllekreeekeealreqiElarlkkknlealnk.kekekesklaearevisalkn.elaelkrqi..ekqelelsekese.leelqerldllkkkl 148
                 + + +l++  + +++a +e++E+ r+++   +++ + ++++  + + ++ e++  ++n ++  l+r+    k   +l++   e + ++     + +++ 
  CCE31015.1 335 MSVANLRRPVSRANAAIEEEMERLRSQLEDRDQQLReQANTLAEMESSLVELQGLIENsDVPGLRRSSldDKDSAQLRAMLREkNDKISMLTSEFDAHR 433
                 567777888889999999999999965544443332033333344444455555444324555555431133445666554431445666666777777 PP

         MAD 149 seleqliqqlekkq.kelaeaeqrikeLefeiqsqeddslivknskselaripelekelerlreenkk.lnelkenkelLkEevedlkkkLereE 241
                 +++   i +le+++ ++    e+r+ eL+ e+ + e  +  v ++ s+l ++ el +ele+  e+ ++   e ++++e L+ eve  k+ L+re 
  CCE31015.1 434 ADFRSTIDTLEMAStETERVYEKRMEELIGEVRELEARNFDVDSVASQLRQLEELVQELEEGLEDARRgEAEARGEVEFLRGEVERTKTELDRER 528
                 777777799998761556789*************************************99977776661568999*****************974 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.3
         MAD 403 levaeeevggykqqastler.elqalrqqesladass....skeevdslkkkleeLelerqrLreqkeelElele 472
                 le+ e e+ g k  +++l r ++    +++ ++ + s      e+ ++++  le   +e q L ++k++ E ele
  CCE31015.1 548 LEQKEDEIRGLKAIIHSLSRdSIGDTEERTPTQGPDSfmmnDGEDGKAVREGLERHIAELQTLLDKKNSREEELE 622
                 455555555555555555442343333222222222123444455555666666666666666666666665555 PP

>> Glutaredoxin2_C  Glutaredoxin 2, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2    0.0055         4      41      88 ..     357     405 ..     343     419 .. 0.78
   2 ?    5.5   0.1      0.02        14      25      76 ..     441     491 ..     437     499 .. 0.83
   3 ?   -2.0   0.1         4   2.9e+03      61      84 ..     598     621 ..     591     629 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0055
  Glutaredoxin2_C  41 kkeksigdfeellaktpeliaelnalLeelepliksseavng.elSvdD 88 
                      +  ++++d ++ l+++++ +ae+++ L el+ li++s+       S+dD
       CCE31015.1 357 RLRSQLEDRDQQLREQANTLAEMESSLVELQGLIENSDVPGLrRSSLDD 405
                      5566788999************************877654444566666 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.02
  Glutaredoxin2_C  25 plpEFatqsAreyftkkkeksigdfeellaktpeliaelnalLeelepliks 76 
                      +  E a+++  + + k++e+ ig+  el + ++  +  + ++L++le+l+++
       CCE31015.1 441 DTLEMASTETERVYEKRMEELIGEVREL-EARNFDVDSVASQLRQLEELVQE 491
                      55688999****************9986.556667899***********985 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4
  Glutaredoxin2_C  61 aelnalLeelepliksseavngel 84 
                      + l+++++el++l++++++ ++el
       CCE31015.1 598 EGLERHIAELQTLLDKKNSREEEL 621
                      567777777777777776666555 PP

>> DUF305  Domain of unknown function (DUF305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.7   0.00011     0.076      40     124 ..     349     431 ..     332     442 .. 0.87
   2 ?   -2.2   0.1       5.8   4.2e+03      43      65 ..     601     634 ..     593     694 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHT---........-----HHHHHHTT---HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHGGGG-- CS
      DUF305  40 aaQqaeiaemqgwleawgqpassagegeaaeaseaeeaampgmaseaelaalraasgadfdrlFlelMirhHqgavemaeaalek 124
                 aa ++e++++++ le+++q+ ++++  ++ +++e++  + +g  +++++  lr+ s +d d + l++M+r  +  ++m + + + 
  CCE31015.1 349 AAIEEEMERLRSQLEDRDQQLREQA--NTLAEMESSLVELQGLIENSDVPGLRRSSLDDKDSAQLRAMLREKNDKISMLTSEFDA 431
                 556789**************98888..788888899999***************************************9998764 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.8
                 HHHHHHHHHHHHHHT---................ CS
      DUF305  43 qaeiaemqgwleawgqpassag...........e 65 
                 +++iae+q++l++ + ++++ +           +
  CCE31015.1 601 ERHIAELQTLLDKKNSREEELEqelaavrganfS 634
                 5677777777777776665555344444333330 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.015        11      21      71 ..     349     396 ..     339     400 .. 0.83
   2 ?   -2.1   0.0       7.8   5.6e+03      10      34 ..     412     436 ..     409     449 .. 0.61
   3 ?    5.0   0.1     0.047        34      20      59 ..     458     497 ..     450     501 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.015
     NPV_P10  21 dalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLnpdevP 71 
                  a+++++++++++l+d     ++L +q+++Lae+e+++ + q +  +  vP
  CCE31015.1 349 AAIEEEMERLRSQLEDR---DQQLREQANTLAEMESSLVELQGLIENSDVP 396
                 588999999***99994...599************9999999888755577 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 7.8
     NPV_P10  10 radikavddkVdalqqqvddvqenl 34 
                 ra  ++ +dk++ l ++ d  ++++
  CCE31015.1 412 RAMLREKNDKISMLTSEFDAHRADF 436
                 5555566666666666665555554 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.047
     NPV_P10  20 VdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkve 59 
                 ++ l  +v ++++   dv+ + ++L ++ + ++ele+ +e
  CCE31015.1 458 MEELIGEVRELEARNFDVDSVASQLRQLEELVQELEEGLE 497
                 5566677888888888888888888888877777777655 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  13.6   0.00016      0.11     347     484 ..     349     501 ..     333     504 .. 0.70
   2 ?    6.7   0.8    0.0039       2.8     327     410 ..     484     567 ..     467     571 .. 0.89
   3 ?    1.9   2.1      0.11        82     275     360 ..     545     632 ..     509     653 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00016
      DUF812 347 eeleeeikklessikqveeeleeekeeneelekevklkkktlellpd.........aeeniekLqalveasaqrlvelakqWekhRvplieeyrelkes 436
                 +++eee+++l+s+++  +++l+e+ ++ +e e+++   + ++e   d         +++  ++L a++ ++++++  l +++++hR+     + +l+ +
  CCE31015.1 349 AAIEEEMERLRSQLEDRDQQLREQANTLAEMESSLVELQGLIENS-DvpglrrsslDDKDSAQLRAMLREKNDKISMLTSEFDAHRADFRSTIDTLEMA 446
                 444555555555555555555555555555554444333333322.12334444779****************************************** PP

      DUF812 437 ksekekeaerkleei....kklrek...mkevaeelrqkeellkqLvaeleklpk 484
                  +e+e  +e+++ee+    ++l+++   +  va++lrq eel+++L++ le++ +
  CCE31015.1 447 STETERVYEKRMEELigevRELEARnfdVDSVASQLRQLEELVQELEEGLEDARR 501
                 ****999999998742222555554222678899999999999999999988765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0039
      DUF812 327 kreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalveasaq 410
                 + ee ++el+e +e++++  +e + e++ l+ ++++++ el++e+e+   + +    +    + l++ e  i+ L+a++ + ++
  CCE31015.1 484 QLEELVQELEEGLEDARRGEAEARGEVEFLRGEVERTKTELDREREKAGVNGAPHGDQGNPSKELEQKEDEIRGLKAIIHSLSR 567
                 33556789*********************************************************************9998775 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.11
      DUF812 275 ksdlaellsefseksetdslktkgsrfthaekl......qftkeelakkaeteeelkkkreeeleelqeqieeleskieeleeeikklessi 360
                 +++l+++ +e++  ++  +++++ s  + +e++      +f      ++ e+ + +++  e+ ++elq+ +++ +s+ eele+e+++++   
  CCE31015.1 545 SKELEQKEDEIRGLKAIIHSLSRDSIGDTEERTptqgpdSFMM----NDGEDGKAVREGLERHIAELQTLLDKKNSREEELEQELAAVRGAN 632
                 3334444444433333333333333332222222111114433....46888999999999***********************99987665 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   8.1     0.001      0.74     313     458 ..     338     501 ..     331     505 .. 0.75
   2 ?   10.8   3.7   0.00019      0.14     301     454 ..     410     563 ..     399     570 .. 0.74
   3 ?    0.9   0.1      0.19   1.4e+02     439     478 ..     597     634 ..     586     676 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.001
      AAA_13 313 asensafeedkeelkaeaealeeqLkglqraleaKrkepfk.svelesvkakie..........sik.klvaeineliakhNekvanleeekeeakkkl 399
                 a++++   ++++ +++e+e l++qL+   ++l +  + +++ + +l ++++ ie          s+  k+ a++ ++ ++ N k+++l++e  + + ++
  CCE31015.1 338 ANLRRPVSRANAAIEEEMERLRSQLEDRDQQLREQANTLAEmESSLVELQGLIEnsdvpglrrsSLDdKDSAQLRAMLREKNDKISMLTSEFDAHRADF 436
                 55667778899999**********************999997788999999997889999999855414567788888888888888777776666666 PP

      AAA_13 400 elhl....veeleseldeykkkykklekaiekleke...lkeeeaelkkleeeikeLekqlrdekp 458
                 +  +    +++ e e   y+k +++l  ++ +le++   ++  +++l++lee ++eLe+ l+d ++
  CCE31015.1 437 RSTIdtleMASTETE-RVYEKRMEELIGEVRELEARnfdVDSVASQLRQLEELVQELEEGLEDARR 501
                 654422004555544.3688888888888888877522268889999999999*****99999876 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00019
      AAA_13 301 elleklkavsde.asensafeedkeelkaeaealeeqLkglqraleaKrkepfk.svelesvkakiesikklvaeineliakhNekvanleeekeeakk 397
                 +l ++l +  d+ + + s+f+  ++++++ +++le++ ++ +r+ e++ +e+     ele  + +++s+ +++ +++el+++  e  ++  + ++ea+ 
  CCE31015.1 410 QLRAMLREKNDKiSMLTSEFDAHRADFRSTIDTLEMASTETERVYEKRMEELIGeVRELEARNFDVDSVASQLRQLEELVQELEEGLEDARRGEAEARG 508
                 34444444444346677889999****************************9983456999999**********************************9 PP

      AAA_13 398 klelhl..veeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlr 454
                 ++e  +  ve+ + eld+   ++++++ a      ++ + ++el+++e+ei+ L++ + 
  CCE31015.1 509 EVEFLRgeVERTKTELDRER-EKAGVNGAP---HGDQGNPSKELEQKEDEIRGLKAIIH 563
                 99975433788888888544.444444322...22345556666666666666665544 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.19
      AAA_13 439 lkkleeeikeLekqlrdekpaaeeinkeLkaf.GlgeleLk 478
                  + le  i+eL++ l +++   ee+++eL+a+ G   ++++
  CCE31015.1 597 REGLERHIAELQTLLDKKNSREEELEQELAAVrG---ANFS 634
                 5677788888888888888888888888888855...4444 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.9    0.0032       2.3      84     123 ..     344     383 ..     330     393 .. 0.79
   2 ?    4.0   8.6     0.082        59      51     129 ..     450     530 ..     399     534 .. 0.46
   3 ?    5.9   0.3     0.021        15       3      45 ..     604     646 ..     593     655 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0032
       HrpB7  84 legrvraaeaelaaarqaldaaedavaatarkiaRndaqi 123
                 ++   +a e+e++++r +l+++ ++++++a ++a +++++
  CCE31015.1 344 VSRANAAIEEEMERLRSQLEDRDQQLREQANTLAEMESSL 383
                 5555678899999999999999999999999999998876 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.082
       HrpB7  51 avraheerlddlttgsspfsia..dylacrayrdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrer 129
                  +r +e+r+++l++    + +   d+ ++   + +le+ v+++e+ l+ ar   ++a+ +v+  + ++ R + ++d+ re+
  CCE31015.1 450 TERVYEKRMEELIGEVRELEARnfDVDSVASQLRQLEELVQELEEGLEDARRGEAEARGEVEFLRGEVERTKTELDREREK 530
                 334444555555544444444311222333344455555555555555555555555555555555555555555555554 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.021
       HrpB7   3 asawrtlverrarreerlraeleaaraalaaaeaalaaaqaqv 45 
                 +  ++tl+ ++  ree+l+ el+a r a  + + + a +++q 
  CCE31015.1 604 IAELQTLLDKKNSREEELEQELAAVRGANFSTNPNSAHRSSQR 646
                 4446777777777777777777777777766666666666665 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   4.6     0.011         8     388     487 ..     348     456 ..     331     466 .. 0.78
   2 ?    9.2   0.4   0.00042       0.3     382     432 ..     476     526 ..     473     528 .. 0.91
   3 ?   -4.2   0.1       4.7   3.4e+03     305     329 ..     601     625 ..     594     630 .. 0.45

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SS-S-.........TTTHHHHSTTTSTTTHHHHHHHT-TT--HHHHHHHHHTT CS
        EzrA 388 leeieekqeeileslkslrkdEkrAreqldeikkelkeikrkieksnLPgi.........PesyleelkeasdeieelakeLekkpinikevnkrldea 477
                  ++iee+ e+++ +l++  ++ ++  ++l+e+++ l e++  ie+s  Pg+         +++   +l+e +d+i+ l  e++  + +       l++a
  CCE31015.1 348 NAAIEEEMERLRSQLEDRDQQLREQANTLAEMESSLVELQGLIENSDVPGLrrsslddkdSAQLRAMLREKNDKISMLTSEFDAHRADFRSTIDTLEMA 446
                 5679999999999999999999999999***********************333333333344455667777888888888888888888888888888 PP

                 TTTSGGGTHH CS
        EzrA 478 rdlveklyek 487
                 ++  e++yek
  CCE31015.1 447 STETERVYEK 456
                 8888888775 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00042
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS CS
        EzrA 382 eeleekleeieekqeeileslkslrkdEkrAreqldeikkelkeikrkiek 432
                 +++ ++l ++ee ++e++e l++ r+ E++Ar +++ ++ e++ +k ++++
  CCE31015.1 476 DSVASQLRQLEELVQELEEGLEDARRGEAEARGEVEFLRGEVERTKTELDR 526
                 677899***************************************999887 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 4.7
                 TTTSSSSSHHHHT--HHHHTTGGG- CS
        EzrA 305 eknlkelkeklehlekqnkelkeel 329
                 e++++el++ l++ ++  +el++el
  CCE31015.1 601 ERHIAELQTLLDKKNSREEELEQEL 625
                 3333444444444444444444443 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1      0.12        87      21      76 ..     337     392 ..     332     396 .. 0.89
   2 ?    4.8   0.2     0.048        34      32      78 ..     448     493 ..     410     499 .. 0.79
   3 ?   -1.2   0.1       3.5   2.5e+03      41      70 ..     599     628 ..     594     631 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.12
      DUF948  21 llklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdpltea 76 
                 + +l++ +++a+a+iee ++++++ l++ ++ l++  ++l+++++ l +++ l+e+
  CCE31015.1 337 VANLRRPVSRANAAIEEEMERLRSQLEDRDQQLREQANTLAEMESSLVELQGLIEN 392
                 568999999*********************99999999999999999999988775 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.048
      DUF948  32 aatieelekqvdpilkevedllakvnelledvneklekvdplteava 78 
                 ++t ++ ek++++++ ev++l a   + ++ v ++l ++++l+++++
  CCE31015.1 448 TETERVYEKRMEELIGEVRELEARNFD-VDSVASQLRQLEELVQELE 493
                 344455569999999999998887777.8999999999999998765 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.5
      DUF948  41 qvdpilkevedllakvnelledvneklekv 70 
                  ++  + e+++ll+k n   e+++++l++v
  CCE31015.1 599 GLERHIAELQTLLDKKNSREEELEQELAAV 628
                 566667889999999999888888888877 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0022       1.5      78     122 ..     336     380 ..     324     381 .. 0.88
   2 ?   -0.5   0.3       1.9   1.4e+03       8       8 ..     471     471 ..     404     502 .. 0.49
   3 ?   -1.2   0.1       3.2   2.3e+03      12      31 ..     475     494 ..     466     527 .. 0.68
   4 ?    1.8   0.2      0.39   2.8e+02      19      57 ..     597     635 ..     587     651 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0022
     DUF5082  78 syqtyvdkldelidaieeEIerLenqiseaqgvldtlqsqlnslk 122
                 s+ +  + +  + +aieeE erL++q+++  + l  + + l +++
  CCE31015.1 336 SVANLRRPVSRANAAIEEEMERLRSQLEDRDQQLREQANTLAEME 380
                 5666777788899***********************999999885 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
     DUF5082   8 l 8  
                 +
  CCE31015.1 471 R 471
                 1 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.2
     DUF5082  12 iaelrseiaaleekIerLke 31 
                 +++  s++++lee +++L+e
  CCE31015.1 475 VDSVASQLRQLEELVQELEE 494
                 56667777777777777763 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.39
     DUF5082  19 iaaleekIerLkeaktklsdekeslkqkkkklekplnss 57 
                 +++le  I++L++  +k  + +e+l+q+  ++++  +s+
  CCE31015.1 597 REGLERHIAELQTLLDKKNSREEELEQELAAVRGANFST 635
                 677888899999988888888888888888877776665 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.6     0.017        13      27     116 ..     345     434 ..     337     453 .. 0.78
   2 ?    2.8   0.5      0.17   1.2e+02      59     116 ..     434     494 ..     414     507 .. 0.58
   3 ?    1.1   0.1      0.59   4.2e+02      28      73 ..     480     525 ..     475     571 .. 0.56
   4 ?    1.3   0.0      0.51   3.6e+02     101     125 ..     601     625 ..     589     630 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.017
                 CCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HCCCHHHHHHHCCHHHHHHHHHHHHHHHH CS
   Fib_alpha  27 lkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskele.eeilrlketidaqesnirvLqnvlesneq 116
                 ++ +  +++++e+l+++le+  ++ +e  ++  e+++sl e q   ++ + v    +++l+ ++ ++l++ + ++  +i  L++ +++ + 
  CCE31015.1 345 SRANAAIEEEMERLRSQLEDRDQQLREQANTLAEMESSLVELQGLIEN-SDVPGLRRSSLDdKDSAQLRAMLREKNDKISMLTSEFDAHRA 434
                 5677889999*******************************9999995.555555555554268899999999999999999998876653 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH...HHCCHHHHHHHHHHHHHHHH CS
   Fib_alpha  59 keikdslrekqkskkdndnvikksskeleeeilrlket...idaqesnirvLqnvlesneq 116
                  + ++++   +  ++++++v++k  +el  e+ +l+++   +d+  s++r+L ++++++e+
  CCE31015.1 434 ADFRSTIDTLEMASTETERVYEKRMEELIGEVRELEARnfdVDSVASQLRQLEELVQELEE 494
                 4444444444444444555555555555555555554323377777888888888777765 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.59
                 CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  28 kyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskk 73 
                 ++ +++++ +++le+ le++++ + ea+  v+ ++  +++++++ +
  CCE31015.1 480 SQLRQLEELVQELEEGLEDARRGEAEARGEVEFLRGEVERTKTELD 525
                 4556666677777777777777777777777666666555555444 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.51
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha 101 esnirvLqnvlesneqkiqkLeqdi 125
                 e++i +Lq++l++++++ ++Leq+ 
  CCE31015.1 601 ERHIAELQTLLDKKNSREEELEQEL 625
                 3788889999998888888888876 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   3.5      0.42     3e+02      65     165 ..     338     439 ..     331     441 .. 0.51
   2 ?    9.2   0.8    0.0013      0.92      64     135 ..     440     511 ..     437     526 .. 0.94
   3 ?    4.5   0.2     0.035        25     124     163 ..     594     634 ..     586     645 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.42
      DUF745  65 eqleqelreaeavvqeekkslqsseanakaaakaakqaqqqlealkallkaakenlenae....qvaagaqqelaektqlleaAkkRveeLkkqlkear 159
                  +l + ++ a+a+++ee + l+s    ++   +  ++  + l+ +++ l + +  +en++    + ++   ++ a+ +++l + + ++ +L++++++ r
  CCE31015.1 338 ANLRRPVSRANAAIEEEMERLRSQ---LEDRDQQLREQANTLAEMESSLVELQGLIENSDvpglRRSSLDDKDSAQLRAMLREKNDKISMLTSEFDAHR 433
                 556666666666666666655432...222333333333334444444444444444433111122333344445556777777777777777777777 PP

      DUF745 160 kdlekt 165
                 +d+++t
  CCE31015.1 434 ADFRST 439
                 777765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0013
      DUF745  64 veqleqelreaeavvqeekkslqsseanakaaakaakqaqqqlealkallkaakenlenaeqvaagaqqela 135
                 ++ le+  +e+e+v ++  ++l    + ++a +  ++++ +ql +l++l+++ +e le+a++  a+a  e++
  CCE31015.1 440 IDTLEMASTETERVYEKRMEELIGEVRELEARNFDVDSVASQLRQLEELVQELEEGLEDARRGEAEARGEVE 511
                 789***********************************************************9999998875 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.035
      DUF745 124 eqvaagaqqelaektqlleaAkkRveeLkkqlkear.kdle 163
                 ++v +g ++ +ae ++ll++ ++R eeL+++l+++r +++ 
  CCE31015.1 594 KAVREGLERHIAELQTLLDKKNSREEELEQELAAVRgANFS 634
                 67889999************************998834555 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.8   0.00037      0.27      79     116 ..     354     391 ..     336     393 .. 0.89
   2 ?    3.4   1.8     0.067        48      87     217 ..     468     506 ..     409     530 .. 0.64
   3 ?    1.1   0.3      0.33   2.3e+02     196     220 ..     600     624 ..     594     643 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00037
  MscS_porin  79 sleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrpe 116
                  +e L ++l+++ +ql e+ ++la+ +s+lvelq  +e
  CCE31015.1 354 EMERLRSQLEDRDQQLREQANTLAEMESSLVELQGLIE 391
                 5789******************************8876 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.067
  MscS_porin  87 llqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnstaaagealsqaqrtalqaelaaleaqieeleqellsnnnrqeLlklq 185
                 l++++ ++ ++ +ql                                                                                    
  CCE31015.1 468 LEARNFDVDSVASQL------------------------------------------------------------------------------------ 482
                 444444555555555.................................................................................... PP

  MscS_porin 186 rdllklriqqleqelqaLqellnekRlaeaek 217
                         +qle+ +q L+e l + R+ eae+
  CCE31015.1 483 --------RQLEELVQELEEGLEDARRGEAEA 506
                 ........555555555555555555555543 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.33
  MscS_porin 196 leqelqaLqellnekRlaeaekava 220
                 le++++ Lq+ll+ k+ +e e  ++
  CCE31015.1 600 LERHIAELQTLLDKKNSREEELEQE 624
                 5556666666666554444443332 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       9.5   6.8e+03      16      32 ..     344     360 ..     342     360 .. 0.85
   2 ?    3.5   0.4     0.083        60      34      47 ..     702     715 ..     698     717 .. 0.89
   3 ?    4.9   0.2     0.031        22      33      48 ..     799     814 ..     797     815 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9.5
   zf-CCHC_4  16 esGeeatiefkYErLrs 32 
                 +s+ +a ie + ErLrs
  CCE31015.1 344 VSRANAAIEEEMERLRS 360
                 678899999999***96 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.083
   zf-CCHC_4  34 CyiCgvlGHsdkrC 47 
                 C+iC   GH++  C
  CCE31015.1 702 CEICETSGHDILTC 715
                 **********9999 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.031
   zf-CCHC_4  33 fCyiCgvlGHsdkrCd 48 
                  C iC + GH+  +C+
  CCE31015.1 799 WCAICERDGHDSVDCP 814
                 5**********99**8 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.5     0.062        44     103     142 ..     337     377 ..     331     390 .. 0.63
   2 ?    4.3   0.7     0.036        26     106     155 ..     450     499 ..     410     502 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.062
  Fzo_mitofusin 103 farlcqqvdetekeleeeikelekeieklee.vqkkakllr 142
                    +a+l++ v ++++ +eee+++l++++e  ++ + ++a++l 
     CCE31015.1 337 VANLRRPVSRANAAIEEEMERLRSQLEDRDQqLREQANTLA 377
                    66777888888888888888888777654431334444443 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.036
  Fzo_mitofusin 106 lcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekf 155
                     ++  ++  +el  e++ele++   +++v +++++l +  ++le+ Le+ 
     CCE31015.1 450 TERVYEKRMEELIGEVRELEARNFDVDSVASQLRQLEELVQELEEGLEDA 499
                    34444556677888888888888888899999999999999999998876 PP

>> XLF  XLF-Cernunnos, XRcc4-like factor, NHEJ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.3     0.035        25     124     167 ..     332     375 ..     326     386 .. 0.84
   2 ?    6.5   0.2     0.012       8.4     135     174 ..     396     435 ..     378     440 .. 0.85
   3 ?   -0.5   0.0       1.6   1.2e+03      56      86 ..     475     506 ..     436     525 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.035
         XLF 124 psssltkeLvlpllqasaelkrqveeLieilkeKDavIskLldk 167
                 +ss+   +L +p+ +a+a+ ++++e L+++l++ D+ ++     
  CCE31015.1 332 SSSMSVANLRRPVSRANAAIEEEMERLRSQLEDRDQQLREQANT 375
                 6788999****************************999755444 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.012
         XLF 135 pllqasaelkrqveeLieilkeKDavIskLldklessGad 174
                 p l+ s+  ++  ++L+++l+eK+ +Is L++++ +  ad
  CCE31015.1 396 PGLRRSSLDDKDSAQLRAMLREKNDKISMLTSEFDAHRAD 435
                 667788889999*******************999876665 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.6
         XLF  56 idpsede.eqlavlleklrkaldgskkssaef 86 
                 +d   ++  ql++l+++l+++l+ + + +ae+
  CCE31015.1 475 VDSVASQlRQLEELVQELEEGLEDARRGEAEA 506
                 44333446899999999999996666665555 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.5     0.071        51      39      80 ..     351     389 ..     335     394 .. 0.65
   2 ?    9.4   0.9    0.0017       1.2      35      79 ..     450     494 ..     418     498 .. 0.58
   3 ?    0.5   0.1         1   7.5e+02      39      67 ..     600     628 ..     597     630 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.071
     BLOC1_2  39 lkdvaaslekkleklnekyeelqpylqqidqiekqvteLeea 80 
                 ++++++ l+++le+ +   ++l+++ + + ++e ++ eL+ +
  CCE31015.1 351 IEEEMERLRSQLEDRD---QQLREQANTLAEMESSLVELQGL 389
                 4444444444444444...48888888888888888777655 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0017
     BLOC1_2  35 kykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLee 79 
                     +++++++l  ++ +l++++  +++  +q+ q+e+ v+eLee
  CCE31015.1 450 TERVYEKRMEELIGEVRELEARNFDVDSVASQLRQLEELVQELEE 494
                 333445566666666666666666666666666666666666665 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 1
     BLOC1_2  39 lkdvaaslekkleklnekyeelqpylqqi 67 
                 l++ +a+l++ l+k n+++eel++ l  +
  CCE31015.1 600 LERHIAELQTLLDKKNSREEELEQELAAV 628
                 67889999999***********9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1384  (0.0771934); expected 358.6 (0.02)
Passed bias filter:                      826  (0.0460706); expected 358.6 (0.02)
Passed Vit filter:                       153  (0.00853366); expected 17.9 (0.001)
Passed Fwd filter:                        74  (0.00412739); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 1.19u 0.31s 00:00:01.50 Elapsed: 00:00:00.51
# Mc/sec: 4840.61
//
Query:       CCE31016.1  [L=334]
Description: uncharacterized protein CPUR_04867 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2432.53
//
Query:       CCE31017.1  [L=916]
Description: related to NOP14-nuclear and nucleolar protein with possible role in ribosome biogenesis [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-302 1005.4  24.3     3e-302 1005.1  24.3    1.1  1  Nop14     Nop14-like family
  ------ inclusion threshold ------
       0.19   10.9   2.2       0.15   11.3   0.1    1.8  2  Noc2      Noc2p family


Domain annotation for each model (and alignments):
>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1005.1  24.3  3.4e-306    3e-302       2     874 ..      50     895 ..      49     896 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1005.1 bits;  conditional E-value: 3.4e-306
       Nop14   2 esirekfNpFevkvn..keKfeVlgrkvkg......ekgrpgvsrskaeekRkktLlkeyqrrnKsggflDrRfGEnDptmtpeekmleRfarEkqrka 92 
                 + ire+fNpF++k+   ++KfeV++++v++      ++grpgv+r+ +ee+R++tLl+++qrrnK+gg+lDrRfGEnDptm+pe+kmleRfarEkqr++
  CCE31017.1  50 DGIREQFNPFDLKHAarGPKFEVTTNRVATgdaakgIRGRPGVTRAMGEERRRETLLVDMQRRNKVGGILDRRFGENDPTMAPEDKMLERFAREKQRSH 148
                 679************99********999888888889************************************************************** PP

       Nop14  93 kkkslFnLeddeee.eLtHyGqsLsel..ddfddedledddddeeeeegkldakrvreahfgggedeeeeeeeeeperkkskkevmeEvIaKSKlhKae 188
                 kk+slF+Ledd  + +LtH+G++L e+  ddf+++dle d d++ + +++++ kr r+    g+e+ +e+ e++eperkk+kkevmeEvIaKSK+hK+e
  CCE31017.1 149 KKGSLFDLEDDVPMeDLTHMGKTL-EFknDDFQEDDLELDYDSDGSVRERQRLKRLRSLATAGDEEGSEH-ENGEPERKKTKKEVMEEVIAKSKMHKYE 245
                 ***********99999********.6668********777774455666888899998888777776664.8*************************** PP

       Nop14 189 RqkekeedeelreeLDkelkdlrsllsstkkpkseeakkeeekekkekksagkdkeeaddeYDklvreLafdkRAkPsdRtKteEElakeekerLeklE 287
                 Rq++ke de+lr+eLDkel+ ++ ll s+k  ++ +    ++  + +++ ag d++++++++D  v++La+d+RA+P+dRtKteEE+a+ee++rL++lE
  CCE31017.1 246 RQAAKEVDEDLRAELDKELSGIQMLLTSSKGVRRADG--GDT--APRSTIAGVDRDAFERNFDLEVKKLAQDRRAQPTDRTKTEEEKAEEESQRLKELE 340
                 ***************************8776655333..222..2335569************************************************ PP

       Nop14 288 eeRlkRMrge..edeeeeeekkkkkkkeasaDdldddfvleeeeeeeefglgkglka..taeeeeeededdfeedddlveseseeeeeeeeedeeeeed 382
                 ++R++RM+ge   d+e+e e++ +k++  s+++ +dd  +ee ee++ fglg+g k+  ta+e++++deddf++dddlv+s+s+ e    e+de + +d
  CCE31017.1 341 NKRQRRMMGEpvTDSEDEVEEDGGKQA--SENNAADDAAFEE-EEDDGFGLGHGNKTrpTATELGFDDEDDFIIDDDLVASGSDLEL--VESDEGSYDD 434
                 **********88444444444444444..5666667777776.55566*******777799999********************988..4444444444 PP

       Nop14 383 eeeeeeeeededdlsdleseeeeeedeleeelleeekkaaeekkekk..kkkkkseekakeelpytfpcPesheellellekreisaedlptvvqRIra 479
                 +++++++            ee+ee+de++++ll+ee++++ + +++   ++ ++ ++++++ lpytf+cP+++ee ++l++ +  s++dlpt+vqRIra
  CCE31017.1 435 DSDNSQA------------EEDEEDDEFTKGLLNEEESRNPFFQASAlaEDGESGQKSDEHGLPYTFSCPQTCEEWCALTSAY--SHKDLPTIVQRIRA 519
                 4443322............3788999999999655555555555555676667777778889*******************66..************** PP

       Nop14 480 lhhpsLaeeNKeklqkflavLlqhiaylasqeeappfailesLvrhlhsLaksfpeeaaeafrekLkemqkelekklakgkkktwPslsdLilLkligl 578
                 lhhp+L+++NKe+l +f+++L+++i+  ++++++ppf++lesL+rh+hsL+k+fp+e+ + fr++L+e+ ++++++l++          dLilL+++g+
  CCE31017.1 520 LHHPRLDSKNKERLANFAMALVDFICLPWDETSSPPFSVLESLIRHIHSLSKMFPSEIGTRFRHHLQEIGNSRPLSLQPC---------DLILLTAVGT 609
                 *********************************999********************************************.........********** PP

       Nop14 579 iFptSDfrHpVvtPallliaeyLgqarirslsdlasglflctlvlqyqslSkRyvPEvinfllnlllllapkkskkkvpgvfpvkevkpsellelkele 677
                 +FptSD++H+VvtPa+l+i+++Lgq+ +++l+d+ +g++l+ l lqyq+l kR+vPEv+nf ln+l++l+p++s+ k+ g+fp++e  p +  +++ ++
  CCE31017.1 610 TFPTSDHFHQVVTPAMLTIGRFLGQKIPQTLADYSTGVYLAILSLQYQQLPKRFVPEVLNFGLNTLCALSPAASS-KKLGSFPCHE--PPA--AIR-IH 702
                 ***********************************************************************9887.9*********..777..455.44 PP

       Nop14 678 ekskkekkqrklslsdllkeesskeeseqlklsllstalsllekfaelyseksafveifepilkllkklk..lkkkklpeelqekleellaklerllkk 774
                 ++++  ++ +kls+sd+++    +++++++k+s+++t+l++l+++a+++++k+af e+f+p+ ++lk+++  +++++lp+++ ek e+l+akl+r+++ 
  CCE31017.1 703 KAAA--AEVKKLSMSDCIA----STATQSTKVSIMNTVLDVLDAAADMWTGKDAFLETFAPVTNVLKHVTskTNRSHLPTSVLEKAEKLAAKLNRMTSL 795
                 3333..3459*********....578899****************************************99999************************* PP

       Nop14 775 alesRrpLelqkhkplaiktlePkFeeeydpdkkydpdreraelaKLkaelKkErKGAiRELRKDaqFlareklkekkekdaeyekkvkrivaelqsee 873
                 a+ sRrpLel++h+plaikt++PkFee++dpdk+ydpdreraelaKLk+e+KkErKGA+RELRKDa+F+are+l+ kk+kd++yekk+kr+vae+qsee
  CCE31017.1 796 AQISRRPLELHHHRPLAIKTYIPKFEETFDPDKHYDPDRERAELAKLKKEHKKERKGAMRELRKDANFMARENLRVKKAKDEAYEKKFKRLVAEIQSEE 894
                 *************************************************************************************************** PP

       Nop14 874 g 874
                 g
  CCE31017.1 895 G 895
                 8 PP

>> Noc2  Noc2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.7e-05      0.15     190     281 ..     721     816 ..     703     830 .. 0.83
   2 ?   -2.4   0.3      0.24   2.2e+03     235     257 ..     871     893 ..     866     912 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.7e-05
        Noc2 190 lktrvyqdglieevvellleylallsksiaFPElvlpvvvqLkrflkstk....neklrkqlkqLvekleenskfieekRekvefspkdreeveaf 281
                   t++ + +++++v+++l   + ++  + aF E++ pv+  Lk+++ +t+     +++ ++ ++L  kl++ +++ +  R+ +e+  ++  +++++
  CCE31017.1 721 TATQSTKVSIMNTVLDVLDAAADMWTGKDAFLETFAPVTNVLKHVTSKTNrshlPTSVLEKAEKLAAKLNRMTSLAQISRRPLELHHHRPLAIKTY 816
                 5678888899**************************************994554455888999999999999999999998888877776666665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.24
        Noc2 235 lkstkneklrkqlkqLvekleen 257
                 +k++k+e ++k++k+Lv +++++
  CCE31017.1 871 VKKAKDEAYEKKFKRLVAEIQSE 893
                 68899999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1554  (0.0866752); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 6369.08
//
Query:       CCE31018.1  [L=336]
Description: uncharacterized protein CPUR_04869 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-20   72.6   3.0    5.3e-20   70.9   3.0    2.0  1  DUF4187         Domain of unknown function (DUF4187)
    1.7e-06   27.8   6.9    4.6e-06   26.4   6.9    1.8  1  G-patch         G-patch domain
  ------ inclusion threshold ------
        1.6    9.6   3.5          6    7.8   2.6    2.3  2  Fic             Fic/DOC family


Domain annotation for each model (and alignments):
>> DUF4187  Domain of unknown function (DUF4187)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   3.0   8.9e-24   5.3e-20       1      54 []     284     335 ..     284     335 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 8.9e-24
     DUF4187   1 eeleefeeleaeerLeklleyLReeylYCfwCgtkYedeedLeenCPGlteedH 54 
                 eele+f++ e+ +rL +l+ yLR+++ YCfwC+++Ye+e++  e+CPG++eedH
  CCE31018.1 284 EELEAFNAQEPGKRLGELVGYLRRRHWYCFWCKMQYESEKM--EECPGTSEEDH 335
                 799**************************************..*********** PP

>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   6.9   7.6e-10   4.6e-06       2      45 .]      80     128 ..      79     128 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 7.6e-10
     G-patch   2 sniGvkmLqkmGWkpGqGLG......kkeqGiaePieakikkdraGlGak 45 
                 +++G+ m++kmG+  G GLG       +   i+ePi+   k+dr+G+G++
  CCE31018.1  80 KSKGFAMMAKMGFT-GGGLGkttkegGEARKITEPIKLSLKEDRGGIGME 128
                 89************.*****985544334449****************85 PP

>> Fic  Fic/DOC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.6     0.001         6      22      72 ..     152     209 ..     130     214 .. 0.73
   2 ?   -1.1   0.0      0.63   3.7e+03      31      72 ..     265     302 ..     232     311 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.001
                 -TS--SS-S.....T..EEEE---SCCCHHHHHHHHHHHHC....HHT-S-HHHHHHHHH CS
         Fic  22 agefrdeev.....segklesalappeevpaeleelleyln....elekeeplekaaalh 72 
                 + e+rd  +     + ++le  + ++++v + ++e ++       ++++eep++kaaal 
  CCE31018.1 152 PYEYRD--RirkerEDERLEKQFQAAQRVAERMDEEESTEAaaaaQEDAEEPVKKAAALS 209
                 345544..2235556799***************666655557789999999******986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.63
                 T..EEEE---SCCCHHHHHHHHHHHHCHHT-S-HHHHHHHHH CS
         Fic  31 segklesalappeevpaeleelleylnelekeeplekaaalh 72 
                   +k+++++  +e++  e     e+l++++++ep +++  l+
  CCE31018.1 265 LGKKGKTVYVTAEDLDDED----EELEAFNAQEPGKRLGELV 302
                 3466777777777777773....3333334466666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2034  (0.113447); expected 358.6 (0.02)
Passed bias filter:                      715  (0.0398795); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 2565.30
//
Query:       CCE31019.1  [L=406]
Description: uncharacterized protein CPUR_04870 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-10   39.4   0.1    1.2e-09   38.2   0.1    1.6  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   6.4e-14   1.2e-09       1      40 [.      45      84 ..      45      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 6.4e-14
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeae 40
                ++Y+iLgv++ as ++I+kaYrk+ + +HPDk +++ +ae
  CCE31019.1 45 TFYDILGVTPAASFEDIQKAYRKKTVALHPDKVKQNLRAE 84
                58*****************************996655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2830.01
//
Query:       CCE31020.1  [L=1239]
Description: uncharacterized protein CPUR_04871 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-11   43.2   0.1    7.6e-11   41.9   0.1    1.8  1  WW        WW domain
     0.0018   17.4   0.7        0.2   10.7   0.2    2.2  2  PhoD      PhoD-like phosphatase


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   8.5e-15   7.6e-11       1      31 []     482     512 ..     482     512 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 8.5e-15
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP+GW+++ d +sG++YY++  T+ tqWe P
  CCE31020.1 482 LPEGWIAHLDQTSGQYYYIHLATQATQWEFP 512
                 8****************************98 PP

>> PhoD  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.2   2.2e-05       0.2      29     103 ..     743     826 ..     708     902 .. 0.81
   2 !    5.0   0.0    0.0012        10     236     317 ..    1012    1099 ..     947    1124 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.2e-05
        PhoD  29 vlhlGDyiYeyg.pgeyase...aaelgrevepp......keivtladYReryaqyktdadlqaahaaapfivvwDDHEvaNnsw 103
                  l lGD iY ++   e+       a  gre++++      +e    + Y   y+ +   + l++a a++p + ++ DH + +  +
  CCE31020.1 743 QLGLGDQIYGDRlWREVPLLkqwLAMSGRENKKKvqwtarHEEDVAHAYFHYYTSHFDQPFLREAFAQIPHVLQMNDHDIFDG-Y 826
                 5669*******8733333331123333444444467778889999999******************************99876.6 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0012
        PhoD  236 lpvnlDaw..dGypaeRe...rlletikeakirnvVvLtGDvHaawandl.dykdpdgeavgvEfvtgsvssgglgeylaeaadatee 317 
                   +v  D w  ++   eR+   r+l+ i+++k  ++ +L+GDv a+ a+ + d ++p+ ++ +  +v++++ s   g y  +  +++++
  CCE31020.1 1012 QEVLKDMWthESKDLERTylvRTLQGIAQQKGIRMTFLSGDVVASGAGLFhDPTHPNDHKTMYQIVSSPIVSAPQGGYILKLLHNQKT 1099
                  5677788844566667778888888899999999**************9966777777999********9998888777733333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 8407.19
//
Query:       CCE31021.1  [L=203]
Description: uncharacterized protein CPUR_04872 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1501.00
//
Query:       CCE31022.1  [L=337]
Description: uncharacterized protein CPUR_04873 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.19   11.9   0.6       0.38   10.9   0.6    1.4  1  Acetyltransf_6  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   2.1e-05      0.38      23      78 ..     248     321 ..     241     330 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.1e-05
  Acetyltransf_6  23 rvatdpedleallelfraqwarr..................pdvfadpltraflrdllaalaargalrlyvlrl 78 
                     +vat+  ++e+++el+++++++r                  +dvf  ++t + +++ll +++a++  rl+vl++
      CCE31022.1 248 EVATTNSTFERVWELMERRRRQRrecvvagiaeedwnldrlEDVFPTRFTDEQWAQLLTEFSAEECQRLFVLEV 321
                     8999************877777779***8888888888888888888888888888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2639.10
//
Query:       CCE31023.1  [L=202]
Description: uncharacterized protein CPUR_04874 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1654.82
//
Query:       CCE31024.1  [L=660]
Description: uncharacterized protein CPUR_04875 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-06   26.4   2.7    1.8e-05   24.7   2.7    1.9  1  CFEM      CFEM domain


Domain annotation for each model (and alignments):
>> CFEM  CFEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   2.7     1e-09   1.8e-05       6      66 .]     405     467 ..     401     467 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1e-09
                 -GGGTCGGG---TTSS.S-.TT-HHHHHH-HHHHHHHHHHHHHH--THHHH.HHHHHHHHHHH CS
        CFEM   6 PkCaqdClaeavkkssgCa.kddtaCiCtnaklqseitdCvtaaCtaeeal.aavnaasslCa 66 
                 P+    Cl++ ++ +s+C+ ++d aC+C n+++ + + +C+ a+ +++++  +a+++++ +C+
  CCE31024.1 405 PQVVPRCLNTFLELKSKCKdNKDAACYCPNKDFVNVVFNCIYAHGENDNVIsEAISFFQGMCG 467
                 666778****9987667**99*************************8877549*********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4670.71
//
Query:       CCE31025.1  [L=458]
Description: uncharacterized protein CPUR_04876 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-18   66.8   0.5    4.2e-18   65.5   0.0    1.9  2  GCR1_C    Transcriptional activator of glycolytic enzymes
  ------ inclusion threshold ------
      0.018   15.0   2.2      0.052   13.6   2.2    1.7  1  YqzE      YqzE-like protein


Domain annotation for each model (and alignments):
>> GCR1_C  Transcriptional activator of glycolytic enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.46   4.1e+03      14      18 ..      73      77 ..      63     118 .. 0.53
   2 !   65.5   0.0   4.6e-22   4.2e-18       1      80 []     359     439 ..     359     439 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.46
      GCR1_C 14 wnEyk 18
                w+E+ 
  CCE31025.1 73 WREWC 77
                44442 PP

  == domain 2  score: 65.5 bits;  conditional E-value: 4.6e-22
      GCR1_C   1 fklsreiktVedlwnEykeglngkpsikslekkygkrWrkdsk..esklfsrRkkiidfierlieeegitreeavkileelR 80 
                 + lsr+ ++V+dl +E+++g+ g+psi sl++++g  Wrkd    +++++s+R +i++ +++ +++ + + + a++ le++R
  CCE31025.1 359 YSLSRNTHNVTDLHREWYVGYGGQPSIASLNDEHGCMWRKDWPgkDREFYSKRLAIMKHVKDKTHQ-EGSTDAAAAALEKYR 439
                 89**************************************876778******************99.8899999999**998 PP

>> YqzE  YqzE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.2   5.8e-06     0.052       5      31 ..      93     120 ..      90     125 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.8e-06
        YqzE   5 YvKyvTqqfVky.mdtPkeeRkkkkeek 31 
                 +v+++T++++++ + +Pk +Rk +++e 
  CCE31025.1  93 LVRFMTEEVINRpLRKPKKKRKRNQKEE 120
                 8**********9899***9999877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3420.85
//
Query:       CCE31026.1  [L=127]
Description: uncharacterized protein CPUR_04877 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1014.31
//
Query:       CCE31027.1  [L=187]
Description: uncharacterized protein CPUR_04878 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.054   13.4   0.8      0.079   12.9   0.2    1.5  2  FWWh      Protein of unknown function


Domain annotation for each model (and alignments):
>> FWWh  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.54   9.7e+03     105     113 ..      23      31 ..      18      36 .. 0.71
   2 ?   12.9   0.2   4.4e-06     0.079      41      63 ..      80     102 ..      74     116 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.54
        FWWh 105 afceafpes 113
                 afceaf + 
  CCE31027.1  23 AFCEAFERH 31 
                 788888654 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.4e-06
        FWWh  41 kallldsFWwffleryqpdkeeq 63 
                 + ++ld FWw++l++ q+++e+ 
  CCE31027.1  80 DTIILDRFWWLYLQHLQRQEETP 102
                 6899**************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1585.29
//
Query:       CCE31028.1  [L=231]
Description: uncharacterized protein CPUR_04879 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.5   0.1       0.21   11.7   0.1    1.5  1  L27_N     L27_N


Domain annotation for each model (and alignments):
>> L27_N  L27_N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.1e-05      0.21       7      24 ..       7      24 ..       3      47 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.1e-05
       L27_N  7 qsLkhvqhcLtDsqSQqD 24
                qsLk v  ++ D+qSQ+ 
  CCE31028.1  7 QSLKAVESTMIDEQSQEE 24
                9***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1927.94
//
Query:       CCE31029.1  [L=211]
Description: uncharacterized protein CPUR_04880 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.68
# Mc/sec: 929.61
//
Query:       CCE31030.1  [L=231]
Description: uncharacterized protein CPUR_04881 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1960.77
//
Query:       CCE31031.1  [L=236]
Description: uncharacterized protein CPUR_04882 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1808.18
//
Query:       CCE31032.1  [L=229]
Description: uncharacterized protein CPUR_04883 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0093   15.8   0.0      0.014   15.2   0.0    1.2  1  Xol-1_N   Switch protein XOL-1, N-terminal


Domain annotation for each model (and alignments):
>> Xol-1_N  Switch protein XOL-1, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.9e-07     0.014      59     131 ..      14      83 ..       5      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.9e-07
                 SGGGSEE------TTHHHHHHHHHHHHHHH--SSEEEEEEE--B-TTS-B-HHHHHHHHHHHHHCCSTT---H CS
     Xol-1_N  59 dvnehliddlpdhkdddrtldilrefidqlklqnvyeikildpldsseklavipvllalskfllasesdisdq 131
                  +++++ d +p+h dd    + l +++++ + +++ e+   d l   + +avip l+a+s  ++  e+d  d 
  CCE31032.1  14 VSMDYIYDSIPQHVDDA--YQDLYHYMEG-DWHELLELAHGDTLPEFNDYAVIPSLIAFSMAYERLETDEGDT 83 
                 579999******99875..577999**98.79************************************98885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1818.24
//
Query:       CCE31033.1  [L=236]
Description: uncharacterized protein CPUR_04884 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.03   13.8   0.0      0.048   13.1   0.0    1.3  1  PagP      Antimicrobial peptide resistance and lipid A acylat


Domain annotation for each model (and alignments):
>> PagP  Antimicrobial peptide resistance and lipid A acylation protein PagP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.7e-06     0.048      28     107 ..      20      99 ..      12     108 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.7e-06
        PagP  28 kekideynekawGlGlgkslydekgnwhglyalafkDShkklepivGYayekvwkiakedlrlGlGytvgvtaRsdykyi 107
                  + ide n +  G  + + + d +g+w  l+ la+ D   +++  +       ++ a +  ++  G t+ +t R+++ y 
  CCE31033.1  20 MDGIDEDNPEHVGDAYRELYHDMEGDWFRLFELAYGDTLPEFDDYATMPILIAFSEAWKRREANEGTTAQLTLRDEMYYS 99 
                 56689999999999999**************************9999999999988889999*************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1744.26
//
Query:       CCE31034.1  [L=135]
Description: uncharacterized protein CPUR_04885 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1104.39
//
Query:       CCE31035.1  [L=161]
Description: uncharacterized protein CPUR_04886 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0065   16.7   0.0       0.01   16.1   0.0    1.4  1  AHSA1     Activator of Hsp90 ATPase homolog 1-like protein
  ------ inclusion threshold ------
       0.15   12.0   0.0        0.2   11.6   0.0    1.3  1  DUF3564   Protein of unknown function (DUF3564)


Domain annotation for each model (and alignments):
>> AHSA1  Activator of Hsp90 ATPase homolog 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.1e-06      0.01      52     108 ..      88     145 ..      56     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-06
                 EEEEEETTTEEEEE.EEEETSETEEEEEEEEEEEEETTEEEEEEEEEEEEHCHHHHHH CS
       AHSA1  52 eylevvpperlvyt.wrledepeeeestvtieleeegggTrltlthtglprkqkeeeg 108
                 + + v p +rl +  w+++ ++++  st+t  l+  ++ T lt+++++l r ++ +++
  CCE31035.1  88 ITRPVRPLKRLTIDnWDFKLPDRHPISTITTALQTLQTTTDLTFRNSNLHRSKAMTMY 145
                 36678899******9****888888************************999988876 PP

>> DUF3564  Protein of unknown function (DUF3564)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.3e-05       0.2      14      75 ..      42     103 ..      33     130 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.3e-05
     DUF3564  14 eeaayAvlWlDtderrWsre.ghegidlPawGklkseegatlllaadeeealctLegldldar 75 
                 e++++ +l    +++ + +e + +g+++Pa+G+l +++g+t+ ++++ ++++  L++l +d+ 
  CCE31035.1  42 EDDDFSLLPAGAASHLFVSEsTNSGVNMPASGNLTEDSGGTS-HSRQITRPVRPLKRLTIDNW 103
                 556788888888888876661578****************98.56778889999999988854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1336.88
//
Query:       CCE31036.1  [L=158]
Description: uncharacterized protein CPUR_04887 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1357.42
//
Query:       CCE31037.1  [L=518]
Description: uncharacterized protein CPUR_04888 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00051   20.6   0.0     0.0011   19.5   0.0    1.6  1  Asp_protease_2   Aspartyl protease
     0.0039   17.7   0.0     0.0076   16.8   0.0    1.4  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease


Domain annotation for each model (and alignments):
>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.2e-07    0.0011       1      90 []     197     293 ..     197     293 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.2e-07
  Asp_protease_2   1 vpvtinGk..pvrfllDTGas.ttlispelaekl....glkvreseltvrvsga..ggevka..rlvrldslklggltlknvpalvldlgeeidg 84 
                     v+v+i+G   ++++l DTGa+ ++ ++pe+a++     + k  +++  + +++a  +g++ +    +   sl++ + +++ +++l++   +++d+
      CCE31037.1 197 VEVKIDGIgmKTKALCDTGAGiYLSMTPEFAQRVvrslKGKIMKLP--KPLQLAdfSGTSRGviTDYIRASLTIDNRQFNCQKFLIMR--SNHDV 287
                     799***954599*********77********887663344555554..44444411444433113333448999**999999999999..78888 PP

  Asp_protease_2  85 lLGmdf 90 
                       G++f
      CCE31037.1 288 FVGQNF 293
                     888876 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.4e-07    0.0076       1      89 [.     197     293 ..     197     295 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.4e-07
                      EEEEETTE..EEEEEEETT-SS.-EEEHHHHHHT......TGGGGEB..TT--EE-TTSTT-..EEEEEEEEEE.EETTEEEEEEEEEESSSSE CS
  gag-asp_proteas   1 vkvkingk..pvkflvDTGAss.tiiseelaerl......glsrkedkgkvevktangevea..krvrldsvkiggielrnvsavvlegelddl 83 
                      v+vki+g   ++k+l DTGA    ++++e+a+r+      ++++++  ++ +++  +g+ ++  + +  +s++i + +++  ++++++ +++d+
       CCE31037.1 197 VEVKIDGIgmKTKALCDTGAGIyLSMTPEFAQRVvrslkgKIMKLP--KPLQLADFSGTSRGviTDYIRASLTIDNRQFNCQKFLIMR-SNHDV 287
                      688999865589********96268*******99664443444444..58999999998866325666779***************95.78888 PP

                      EEEHHH CS
  gag-asp_proteas  84 LLGldf 89 
                        G++f
       CCE31037.1 288 FVGQNF 293
                      889987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 4222.48
//
Query:       CCE31038.1  [L=233]
Description: uncharacterized protein CPUR_04889 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 2039.82
//
Query:       CCE31039.1  [L=271]
Description: probable phosphomannomutase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.4e-101  338.1   0.1   2.7e-101  337.9   0.1    1.0  1  PMM          Eukaryotic phosphomannomutase
     0.0044   16.8   0.0      0.059   13.1   0.0    2.1  1  Hydrolase_3  haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.088   13.2   0.0         11    6.4   0.0    2.8  3  HAD          haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PMM  Eukaryotic phosphomannomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.9   0.1  4.6e-105  2.7e-101       3     220 ..      42     270 ..      40     271 .] 0.95

  Alignments for each domain:
  == domain 1  score: 337.9 bits;  conditional E-value: 4.6e-105
                 HHHHHHCTTSEEEEE-SS-HHHHHHHHS.....TTHHHH-SEEEEGGGTEEEETTEEEEE--HHHHH-HHHHHHHHHHHHHHHHCS--S---S-SEEEE CS
         PMM   3 eflqklrkkveigvvgGsdlekikeqla....gdevldefdyvfsenGlvaykkgkelasqsiiealgeeklkklinfvlryladldlPvkrGtfiefr 97 
                  +l+ lr+k++ig+vgGsdl k++eq++    g  v+  fd++f+enGl+ayk g+el s+s+i+++ge+k+k+l+n++l+y+ad+d+PvkrGtf+efr
  CCE31039.1  42 SILSALRQKCAIGFVGGSDLAKQQEQIGkpagGVPVTTLFDFCFAENGLTAYKLGQELPSNSFIKWIGESKYKELVNYILHYVADMDVPVKRGTFVEFR 140
                 68999**********************977767789*************************************************************** PP

                 SSEEEE-SS-TTSSHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTSSEEEEEETTTEEEEEETT-SGGGGGGGCTTST.......-SEEEEEESS-STTS CS
         PMM  98 ngllnvsPiGrnasqeernefeeydkkekireklvealkeefadlgltfsiGGqisfdvfPkgWdktyclqhvekds.......fdeihffGdktaeGG 189
                 ng++nvsP+Grnas++ernefe++dk   +r+k+ve+lk++f d++lt+siGGqisfdvfP+gWdktycl+h+e++        +++ihffGdk+ eGG
  CCE31039.1 141 NGMINVSPVGRNASTQERNEFEQFDKVSGVRAKFVEDLKKKFPDIDLTYSIGGQISFDVFPRGWDKTYCLRHLESEAkkeggvtYNKIHFFGDKAFEGG 239
                 *************************************************************************98742333455899************ PP

                 TTHHHHHSTTCEEEE-SSHHHHHHHHHHHHT CS
         PMM 190 ndyeiyadprtighsvtspddtvkkleellk 220
                 nd+eiy+d rtigh+vtspddt+++l+el+ 
  CCE31039.1 240 NDWEIYSDSRTIGHAVTSPDDTIRILKELFD 270
                 ****************************996 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   9.9e-06     0.059       3     212 ..      23     234 ..      21     249 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.9e-06
                  EEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHH....HCCCC...SEEEEGGGTEEECTTTEEE.EE--B-...HHHHHHHHH CS
  Hydrolase_3   3 lDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvle....elgld...lpvialNGaliddekgkil.ykstis...kedvkeiik 89 
                  +D+DGTL       s+++ +++  l+ + + + +  G  l + ++ +      + ++    ++ a NG    ++ g+ l ++s i+   ++++ke+++
   CCE31039.1  23 FDVDGTLTPARLDASPQILSILSALR-QKCAIGFVGGSDLAKQQEQIGkpagGVPVTtlfDFCFAENGLTA-YKLGQELpSNSFIKwigESKYKELVN 118
                  89999999999999999999999888.77888888887554443333311003444467777788899888.55555552444444555667777777 PP

                  HHHHTTCEEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-S CS
  Hydrolase_3  90 llkennveillytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnklltitssskgyleimpkgvs 187
                  ++ ++  ++ +  +++++v+         +   +++   ++ +++e +e e++ k+     ++ +++l+k++++    +lt++  ++ ++++ p+g++
   CCE31039.1 119 YILHYVADMDVPVKRGTFVEFR-------NGMINVSPVGRNASTQERNEFEQFDKVS-GVRAKFVEDLKKKFPDI---DLTYSIGGQISFDVFPRGWD 205
                  7766666666666666666555.......2233333333333334444444444443.23334445555555555...3499999************* PP

                  HHHHHHHHH....HHCT--GGGEEEEESS CS
  Hydrolase_3 188 Kgtalkkla....kelnisleeviafGDg 212
                  K   l++l     ke +++ +++  fGD+
   CCE31039.1 206 KTYCLRHLEseakKEGGVTYNKIHFFGDK 234
                  ********866667778889999999996 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0018        11       2      12 ..      22      32 ..      21      52 .. 0.84
   2 ?    3.2   0.0     0.017        99      18      70 ..      80     132 ..      72     144 .. 0.84
   3 ?   -0.9   0.0       0.3   1.8e+03     150     179 ..     202     233 ..     184     235 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0018
         HAD  2 lfDfDgTLldg 12
                lfD+DgTL++ 
  CCE31039.1 22 LFDVDGTLTPA 32
                8********97 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.017
         HAD  18 llrfllrrgaprlwralreklllalfrellrldraglaelleallaglseela 70 
                 l++f  +++++ ++++ +e + +++++ ++++++++l + + ++ a+++ +++
  CCE31039.1  80 LFDFCFAENGLTAYKLGQELPSNSFIKWIGESKYKELVNYILHYVADMDVPVK 132
                 66777788888899999******************************995554 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.3
         HAD 150 rgegkvaalre..wlaaegegidleevvayGD 179
                 rg++k  +lr     a+++ g ++ +++++GD
  CCE31039.1 202 RGWDKTYCLRHleSEAKKEGGVTYNKIHFFGD 233
                 56667766666555567777999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2021.15
//
Query:       CCE31040.1  [L=111]
Description: uncharacterized protein CPUR_04891 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 917.05
//
Query:       CCE31041.1  [L=159]
Description: uncharacterized protein CPUR_04892 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1209.56
//
Query:       CCE31042.1  [L=199]
Description: uncharacterized protein CPUR_04893 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1494.39
//
Query:       CCE31043.1  [L=274]
Description: uncharacterized protein CPUR_04894 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0081   15.5   0.0        2.5    7.4   0.0    2.1  2  Phytochelatin_C  Domain of unknown function (DUF1984)
  ------ inclusion threshold ------
      0.081   12.9   0.0        6.3    6.8   0.0    2.2  2  DUF4434          Domain of unknown function (DUF4434)


Domain annotation for each model (and alignments):
>> Phytochelatin_C  Domain of unknown function (DUF1984)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0   0.00066       5.9       4      31 ..     117     145 ..     114     156 .. 0.86
   2 !    7.4   0.0   0.00028       2.5       4      38 ..     226     261 ..     223     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00066
  Phytochelatin_C   4 sllytlsCkdesWvs.vakylvedvplll 31 
                      + ly l C +e+W + +a + ++dv  ++
       CCE31043.1 117 ADLYPLHCTQEQWNQlMAEFSIQDVGEII 145
                      569**********87589*******8776 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00028
  Phytochelatin_C   4 sllytlsCkdesWvs.vakylvedvplllksedvkd 38 
                      + ly l C de+W++ va + +ed+  ++  +  +d
       CCE31043.1 226 ADLYPLKCTDEQWAQlVADFSSEDISEVIFAQTRHD 261
                      669**********875799******99987766655 PP

>> DUF4434  Domain of unknown function (DUF4434)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.005        44      17      41 ..     124     157 ..     115     221 .. 0.67
   2 ?    6.8   0.0   0.00071       6.3      15      42 ..     231     258 ..     221     268 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.005
                 --HHHHHHHHHHHHHTT--EEEES.........- CS
     DUF4434  17 ltdkqWkeklrelkelgmntlilq.........r 41 
                  t++qW++ ++e++ +++ ++i+           
  CCE31043.1 124 CTQEQWNQLMAEFSIQDVGEIIFGqpghadirsL 157
                 689***********99999999864454444440 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00071
                 ----HHHHHHHHHHHHHTT--EEEES-S CS
     DUF4434  15 qnltdkqWkeklrelkelgmntlilqrv 42 
                  + td+qW++ ++++++ ++ ++i+ ++
  CCE31043.1 231 LKCTDEQWAQLVADFSSEDISEVIFAQT 258
                 5789********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1955.89
//
Query:       CCE31044.1  [L=120]
Description: uncharacterized protein CPUR_04895 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 896.55
//
Query:       CCE31045.1  [L=96]
Description: uncharacterized protein CPUR_04896 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 759.08
//
Query:       CCE31046.1  [L=197]
Description: uncharacterized protein CPUR_04897 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.017   14.5   0.0    1.2  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.17   10.3   0.0       0.24    9.8   0.0    1.1  1  SGT1          SGT1 protein


Domain annotation for each model (and alignments):
>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.9e-06     0.017     116     184 ..      29      97 ..      22     111 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.9e-06
  Mg_chelatase 116 pefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpcgklkdkekectcsekeierYlsk 184
                   p+ +++ l+ L ePl++++v+++ ++ +  f a++ l +am p ++++++++ + ++ +  e +r+l++
    CCE31046.1  29 PDSTARGLDRLPEPLQTEQVRLRLSAVRRIFVANTELRIAMAPPQSAEVTTTPQVVEVTLGEFRRFLER 97 
                   56677889*******************************************999999999999999887 PP

>> SGT1  SGT1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   2.7e-05      0.24     122     204 ..      55     143 ..      50     144 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 2.7e-05
        SGT1 122 enrvfiykGelhiipkssksseve..lkakepslsqalellsknpeetlasesiqsaik..krlkgYpekik..eslhrahvyvPasva 204
                  +r+f+ + el+i  ++ +s+ev+   +  e++l +  ++l++++e t   ++++ ++   +r++ + e+ +  + lh+a +  P +va
  CCE31046.1  55 VRRIFVANTELRIAMAPPQSAEVTttPQVVEVTLGEFRRFLERRAEVTTTPQNVEVTLGdfRRVRRFLERRQeqAALHQADAPDPDEVA 143
                 68*************99999999775677899*************************97447*****9987611569999988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1494.15
//
Query:       CCE31047.1  [L=137]
Description: uncharacterized protein CPUR_04898 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1023.57
//
Query:       CCE31048.1  [L=1022]
Description: uncharacterized protein CPUR_04899 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-51  172.0  41.1    2.5e-29  102.2  14.5    3.0  3  Na_Ca_ex   Sodium/calcium exchanger protein
     0.0035   17.4   0.1     0.0035   17.4   0.1    3.8  3  MARVEL     Membrane-associating domain


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2  14.5   2.8e-33   2.5e-29       3     149 ..     110     248 ..     108     250 .. 0.96
   2 ?   -0.8   0.6      0.15   1.3e+03     101     121 ..     815     834 ..     763     850 .. 0.62
   3 !   80.3  12.3   1.5e-26   1.4e-22       3     148 ..     849    1009 ..     847    1012 .. 0.83

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 2.8e-33
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkl 101
                 ++l +l++ ++++++df++ +++ ia++lg+s+s++G+t+lA+gn +p+++s+++a+ ++++ +a+g+++G++ f++++v G++al+  +kvd++++++
  CCE31048.1 110 VWLGLLFTTIGIAASDFFSVNLSTIATILGLSESLAGVTFLAFGNGSPDVFSTFAAMNSNSPGMAVGELIGAASFITGVVAGSMALVREFKVDKKTYAR 208
                 678899999999*************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 102 dlgllllvallllllvlllllplfvpgrltvleglvllllYalylvls 149
                 d+  +++va+++++l+l+        grl ++e+ ++++ Y++y++ +
  CCE31048.1 209 DI-CFFIVAVAFSMLFLA-D------GRLRFWECWAMVGYYVVYVFTV 248
                 **.*********998887.6......*******************975 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHHHHHHHTC CS
    Na_Ca_ex 101 ldlgllllvallllllvllll 121
                 + + ++++v+l+ll+ +++ +
  CCE31048.1 815 RMVLYTFIVSLVLLACLFV-M 834
                 3333555555555443332.3 PP

  == domain 3  score: 80.3 bits;  conditional E-value: 1.5e-26
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCE. CS
    Na_Ca_ex    3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdses. 98  
                  f++f++s+++is++a  +v  +  ++ +l+is+++lGlt++A+gns+++l+++i++a+ g++ +a+++++G+ ++n+ll+iG+ ++++++++ ++  
  CCE31048.1  849 FMGFVISIAWISTIAGEVVGVLKTFGIILNISEALLGLTIFAAGNSVGDLVADITVARLGYPVMALSACFGGPMLNILLGIGIGGVLMMVQHANKKh 945 
                  789***********************99*************************************************************44444444 PP

                  ............CCHHHHHHHHHHHHHHHHHHHTCHHHHH...HTEEHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex   99 ............lkldlgllllvallllllvlllllplfv...pgrltvleglvllllYalylvl 148 
                              + +++g +llv+ + ll++l+lll+  v    + l++  g  l++l+ l ++ 
  CCE31048.1  946 akhpeqpiqygpYSVEVGPTLLVSTVTLLITLVLLLIV-VplnNWILSRKIGWGLMALWTLSTIA 1009
                  55667788899988999555555555555555555444.23689999999999999999988765 PP

>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   6.7     0.038   3.4e+02      12      92 ..     103     225 ..      94     227 .. 0.81
   2 ?    2.1   4.9     0.019   1.7e+02      20      92 ..     795     860 ..     781     869 .. 0.73
   3 !   17.4   0.1   3.9e-07    0.0035       3      92 ..     871    1012 ..     869    1015 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.038
      MARVEL  12 lqlvfaiiilgliaslia........................................kldqllgspssalnfavfvavfsflyalfllvlylfk..ns 68 
                 + +v+ ++ lgl  ++i+                                         ++  ++s+s+ +     +++ sf++ +++  ++l +  + 
  CCE31048.1 103 VAFVLLVVWLGLLFTTIGiaasdffsvnlstiatilglseslagvtflafgngspdvfSTFAAMNSNSPGMAVGELIGAASFITGVVAGSMALVRefKV 201
                 5677777777777777777777777777777777777777777799999*********888899********************888888888887977 PP

      MARVEL  69 aftsilwplidlivdalaallwlv 92 
                      ++ ++ +iv + +++l+l+
  CCE31048.1 202 DKKTYARDICFFIVAVAFSMLFLA 225
                 777788999999999999999886 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.019
      MARVEL  20 ilgliasliakldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlv 92 
                 il+l a++        ++ s  ++  v +  ++f+++l+ll++ +  +s   + +  ++++++ +++++ w+ 
  CCE31048.1 795 ILILWANMR-------QDLSHPAKTLVRMVLYTFIVSLVLLACLFVMTSEHKRPRYHFLLCFMGFVISIAWIS 860
                 444444444.......556667777788888999999999999888777878888889999999999999875 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 3.9e-07
      MARVEL    3 lsplgilrilqlvfaiiilgliaslia....................................................kldqllgspssalnfavf 47  
                  ++  +il i + ++++ i++   s+++                                                    ++ +++g +s  ++ ++ 
  CCE31048.1  871 KTFGIILNISEALLGLTIFAAGNSVGDlvaditvarlgypvmalsacfggpmlnillgigiggvlmmvqhankkhakhpEQPIQYGPYSVEVGPTLL 967 
                  556689999999********9999999999*************************************************99999************* PP

      MARVEL   48 vavfsflyalfllvlylfknsaftsilwplidlivdalaallwlv 92  
                  v+++++l++l+ll++ +  n  + s+++ + ++++  l ++ ++v
  CCE31048.1  968 VSTVTLLITLVLLLIVVPLNNWILSRKIGWGLMALWTLSTIANVV 1012
                  ***************876699999999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 6788.23
//
Query:       CCE31049.1  [L=858]
Description: related to condensin complex component cnd2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
          0 1024.5   9.5          0 1024.3   9.5    1.0  1  Cnd2      Condensin complex subunit 2
  ------ inclusion threshold ------
      0.015   15.5   0.0        0.1   12.8   0.0    2.4  2  CNDH2_N   Condensin II complex subunit CAP-H2 or CNDH2, N-ter


Domain annotation for each model (and alignments):
>> Cnd2  Condensin complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1024.3   9.5         0         0       2     766 .]      20     847 ..      19     847 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1024.3 bits;  conditional E-value: 0
        Cnd2   2 ssstplkrspvkiplNDDeaEkakrrksrqalheaqinqikaaatparrrksaaveeaassssprtP......................ktpmkrvpil 78 
                 +ss+p+k s +kiplNDD++Ek +r++sr+al+e+qin+i+aaatp+++    a+ ++ ++++p  P                      +tp+krvpil
  CCE31049.1  20 HSSSPFK-SSIKIPLNDDAHEKGQRMHSRKALQEKQINEIRAAATPRKS---LARLDDLENATPGPPmatpkagriadimdevtvggasATPVKRVPIL 114
                 789****.999***********************************554...4455544444444445556************9998755********* PP

        Cnd2  79 anfeewmklatdNKInakNsWnlaLIDyfhdmsLLkegdsvNFqkAsctLDgcvKIYtsRVDSvatetgkllsgLadstekkkkdneeeedeeegdeee 177
                 anfeewmk+atdNKIna+NsWn+aLIDyfhdmsLLkegd+vNFqkAsctLDgcvKIYt+RVDSvatetgkllsgLads++kkk+ ++    ++egde  
  CCE31049.1 115 ANFEEWMKMATDNKINATNSWNFALIDYFHDMSLLKEGDGVNFQKASCTLDGCVKIYTNRVDSVATETGKLLSGLADSSSKKKD-RD----DAEGDETG 208
                 ******************************************************************************964443.33....34677777 PP

        Cnd2 178 eeeegedgeekkkkkkKkqrsseatlaksfeslqlkklelefavDPLFkkasAdfDeggakglLLNhLsidsegrivfDssddaedaa........... 265
                 +e  +edg+ kkk++kK+qrsseatla+sf+slqlkk+elef+vDPLFkkasAdfDeggakglLLNhL+ids+grivfDssdda d+a           
  CCE31049.1 209 DE-LDEDGNPKKKPRKKTQRSSEATLAPSFSSLQLKKFELEFSVDPLFKKASADFDEGGAKGLLLNHLMIDSQGRIVFDSSDDAGDVAptekkdedded 306
                 65.99********************************************************************************************** PP

        Cnd2 266 ......................sqteeeeeeeeeeedveidlasLaarffpdlerleeldicpslknfdlgdapsgsldipflkapedwrqdkddleae 342
                                        + eeee+e+eee  veidl sL+++f+p+l+ l+eld+cpslknfdlgd +sgs+dipflkapedwr+++++ +  
  CCE31049.1 307 sfsddanitaqleheplekkrkVPGEEEEQEQEEEPAVEIDLMSLGQKFLPSLSLLDELDVCPSLKNFDLGD-ASGSMDIPFLKAPEDWRDQDKNHA-- 402
                 ********************998888999999999*************************************.9***************96666644.. PP

        Cnd2 343 delgdasgilldddnaagfdddddgllnafdlgg.dagfgeggeawareaalepq.........dede.gevedndeyavslsrkqkkekveelrdils 430
                   +gd+sg l+ddd+++gfdddd g l++fd+gg d++fgeggeawar+aal pq         +e++ g+++dn ey+vs+ + q+++k++e  dil+
  CCE31049.1 403 --AGDHSGLLIDDDAPLGFDDDDLG-LGSFDIGGgDVAFGEGGEAWARDAALAPQlrvydvglgEEGDgGDFDDNGEYIVSMAKPQSTDKTHE--DILG 496
                 ..589**************999977.9******779***********************99886444435888889*****************..**** PP

        Cnd2 431 yfdqalqknWagPehWrirrikdvnkseeaakkkrkekepfeidFeapldesvaealftqassnsaislpkkqlkkksrnlLPddkhfnskqLlklflk 529
                  fdqalqknW+++ehWrir+ik+vnk++  + kkrkekepfeidF++pl++s+ + ++tqassns is++kk++k+ksrnlLPddkhf+sk+Ll+lflk
  CCE31049.1 497 FFDQALQKNWTSAEHWRIRKIKEVNKPA-GEVKKRKEKEPFEIDFASPLESSMYDVIHTQASSNSIISMSKKDCKSKSRNLLPDDKHFSSKSLLSLFLK 594
                 ***************************9.6779****************************************************************** PP

        Cnd2 530 Pkarlsrr.................keeveegemdeafwakqkaeeeaakedeeapqGdyDanffadddglpfpqdlgggddddDddlefadarehfsp 611
                 Pkarlsrr                  +++++ emdeafwakqk ++     d+++p+GdyDanff+ ddgl +p +  ggdd dDddlefadareh+sp
  CCE31049.1 595 PKARLSRRrattqgigsragygahpPDDNQQIEMDEAFWAKQKGPD-----DTALPEGDYDANFFQ-DDGLGVPGA--GGDDADDDDLEFADAREHLSP 685
                 **********************9864447899***********995.....66799**********.889988754..6778888899*********** PP

        Cnd2 612 aagaagatgltaelagleatagaeaklnetlafgstlvtqprrvrkeyvqYArvAKkvDvrrLKeelWklieeellesaaeeeesseeaakske..... 705
                     +g+ glt++  g++a++g+e+   ++ afg+tlvt++rr+r+eyv+YAr+A kvDvrrLK+e+Wk++ +++le  ++++ s++ea+  +      
  CCE31049.1 686 ----DGDVGLTEAG-GMTAMMGGETF--TNAAFGHTLVTSTRRIRPEYVNYARKATKVDVRRLKQEIWKGMAFDQLEPPTKARPSTPEATPPEPdeesa 777
                 ....7889998888.57888888754..5589**********************************************9999999998776666899** PP

        Cnd2 706 .........keekgalkFtevmnnLkkvypkqmmediStslaFiclLHLANEkgLklekqedledlkIrk 766
                          ++e+ +l+Ft+vmn+L++vypkq+m+diSts++FiclLHLANEkgL+++k ++l++lkIrk
  CCE31049.1 778 qqpvqpaseDNESPTLNFTQVMNGLQSVYPKQAMRDISTSYCFICLLHLANEKGLVIDKADNLDELKIRK 847
                 ********99999*******************************************************97 PP

>> CNDH2_N  Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.1e-05       0.1      38      95 ..     152     208 ..     128     226 .. 0.69
   2 ?   -2.3   0.0      0.55   4.9e+03      10      30 ..     534     554 ..     529     564 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
     CNDH2_N  38 kttlnFaeAaLliqgsavvYsrKveyLyslvyqtlellskkkkkkqkesesekgeded 95 
                    +nF +A+  + g +++Y+ +v+ + + + + l  l++ ++kk+++  +++g+++ 
  CCE31049.1 152 GDGVNFQKASCTLDGCVKIYTNRVDSVATETGKLLSGLADSSSKKKDR-DDAEGDETG 208
                 3459*************************9999999888777633332.222222222 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.55
     CNDH2_N  10 kNwdvdiakeLeeYLeeleei 30 
                 + +++d a+ Le  + ++ ++
  CCE31049.1 534 EPFEIDFASPLESSMYDVIHT 554
                 6799********998887444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 5484.41
//
Query:       CCE31050.1  [L=527]
Description: related to nonhistone chromosomal protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-16   58.8   0.1      1e-15   57.8   0.1    1.6  1  HMG_box    HMG (high mobility group) box
    1.1e-12   48.4   0.2    2.2e-12   47.4   0.2    1.5  1  HMG_box_2  HMG-box domain
    3.5e-11   43.4   0.0    7.1e-11   42.4   0.0    1.5  1  SAM_1      SAM domain (Sterile alpha motif)
    4.6e-07   29.9   1.4    4.9e-07   29.8   0.0    1.8  2  SAM_2      SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.1   2.3e-19     1e-15       1      69 []     117     183 ..     117     183 .. 0.98

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 2.3e-19
                 --SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69 
                 p Rp+sa++lfs+++r+ lk++n  l+ +ei+k +ge W+  ++ +K+ +e++a+++k+ry+++ +eyk
  CCE31050.1 117 PERPPSAYVLFSNKMRDDLKSQN--LSFTEIAKLVGENWQTIPPGDKEVFERQANAAKTRYHRQLAEYK 183
                 78********************7..9******************************************8 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.2   4.8e-16   2.2e-12       2      72 ..     115     182 ..     114     183 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 4.8e-16
                 --.-SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS-- CS
   HMG_box_2   2 kkpkaarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkkrydrealty 72 
                 + p ++++AY+lf  +m++ lk +      + e+ kl++e+W++++  +Ke +e++A++ k ry r+  +y
  CCE31050.1 115 NAPERPPSAYVLFSNKMRDDLKSQ---NLSFTEIAKLVGENWQTIPPGDKEVFERQANAAKTRYHRQLAEY 182
                 5699******************99...89***********************************9987665 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   1.6e-14   7.1e-11      12      61 ..       9      58 ..       7      61 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 1.6e-14
                HHHTTSGGGHHHH.HTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHHHHHH CS
       SAM_1 12 LesiglgqYadlF.rageidgdaLlllteddLeklgvtllGHrkkIlyaIq 61
                Le++gl+qY d+F  +g++ +d +l+++e+dL +lgv+l GHr+k++++I 
  CCE31050.1  9 LEDLGLSQYHDAFvNQGFDAWDIILDIQESDLDALGVKL-GHRRKLQRRIA 58
                89***********************************88.********997 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.1e-10   4.9e-07      13      64 ..       9      59 ..       8      61 .. 0.95
   2 ?   -3.4   0.3       2.5   1.1e+04      17      27 ..     190     200 ..     188     202 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.1e-10
                HHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHHHHH CS
       SAM_2 13 LrsiglkqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkkiqe 64
                L+ +gl qy d+F ++g++  +++l + e+dL +lG+ ++ghr+k+ + i +
  CCE31050.1  9 LEDLGLSQYHDAFVNQGFDAWDIILDIQESDLDALGV-KLGHRRKLQRRIAN 59
                7789*********************************.********999876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.5
                 TTGGGHHHHHH CS
       SAM_2  17 glkqytdnFrd 27 
                 ++ qy + F++
  CCE31050.1 190 KYTQYLYEFKQ 200
                 78999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4016.87
//
Query:       CCE31051.1  [L=72]
Description: uncharacterized protein CPUR_04902 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.011   16.0   2.7      0.011   15.9   2.7    1.1  1  TMF_TATA_bd  TATA element modulatory factor 1 TATA binding


Domain annotation for each model (and alignments):
>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   2.7   6.1e-07     0.011      44      93 ..      22      71 ..       4      72 .] 0.91

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.1e-07
  TMF_TATA_bd 44 eareeivklmkeneelkelkkeleelekeleelqeryetlLellGeksEe 93
                 e+++e  +l++   el++ +++ +++e++l+ l++++e++L+ l e sE+
   CCE31051.1 22 EVEAEAGDLTQAYRELAKGEQTAAQMEASLTVLESKLEAMLKALEEGSEK 71
                 7889999***************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1084  (0.0604607); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 616.69
//
Query:       CCE31052.1  [L=1335]
Description: NIK-1 nonidentical kinase-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-41  138.7  15.0    4.8e-08   33.3   0.4    7.3  6  HAMP            HAMP domain
    2.3e-30  105.4   1.2    6.9e-30  103.8   0.4    2.3  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
    7.3e-26   90.5   0.2    4.8e-25   87.9   0.2    2.6  2  Response_reg    Response regulator receiver domain
    4.8e-17   61.8   3.4    1.8e-16   59.9   0.6    3.6  3  HisKA           His Kinase A (phospho-acceptor) domain
    3.8e-05   24.0  15.2        8.7    6.8   0.1    7.6  7  Syntaxin_2      Syntaxin-like protein
     0.0024   18.1  31.0       0.42   10.8   0.3    6.8  7  Fib_alpha       Fibrinogen alpha/beta chain family
     0.0085   15.6  10.4       0.44   10.0   0.1    4.5  5  DUF3829         Protein of unknown function (DUF3829)
     0.0087   16.3   0.0         68    3.7   0.0    4.8  5  DUF4279         Domain of unknown function (DUF4279)
  ------ inclusion threshold ------
      0.089   12.7   2.3       0.57   10.1   0.1    3.4  3  GatB_Yqey       GatB domain
       0.11   12.1  22.7          4    7.0   3.8    5.3  4  DUF4795         Domain of unknown function (DUF4795)
       0.24   11.7  50.4        2.7    8.3   3.6    9.8  7  DUF948          Bacterial protein of unknown function (DUF948
       0.24   10.6   7.7        8.9    5.4   0.1    4.7  6  GLE1            GLE1-like protein
       0.43   10.8  11.3        6.9    6.9   0.1    5.7  6  BORCS6          BLOC-1-related complex sub-unit 6
       0.54   10.3   8.2       0.66   10.0   0.1    3.8  4  GhoS            Endoribonuclease GhoS
        7.3    7.4  10.1        4.1    8.2   1.7    4.6  4  PMC2NT          PMC2NT (NUC016) domain
        7.7    7.2  19.6        3.6    8.2   0.2    6.3  7  DUF883          Bacterial protein of unknown function (DUF883


Domain annotation for each model (and alignments):
>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1    0.0079       8.8      10      52 ..     202     247 ..     198     248 .. 0.90
   2 !   33.3   0.4   4.2e-11   4.8e-08       2      52 ..     289     339 ..     282     340 .. 0.96
   3 !   24.9   0.0   1.8e-08     2e-05       2      53 .]     381     432 ..     380     432 .. 0.96
   4 !   32.5   0.0   7.1e-11     8e-08       2      51 ..     473     522 ..     472     524 .. 0.95
   5 !   28.3   0.1   1.5e-09   1.6e-06       3      52 ..     566     615 ..     564     616 .. 0.94
   6 !   17.4   0.1   3.7e-06    0.0042      20      53 .]     674     708 ..     656     708 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0079
                 HHHHHHHHHHHTTTBTSST...CCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP  10 LrrLaraarriaaGdldtr...lpvsgrDEiGeLarafNaMldrLr 52 
                 Lr++ + + ++a+Gdl+      +v+ + Ei +  r++NaM+d+L+
  CCE31052.1 202 LREIGEIVTAVARGDLTMKvrmNTVEMDPEITTFKRTINAMMDQLQ 247
                 899999999*****999999966669******************97 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 4.2e-11
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +a +++  +r++a+++ ++a+Gdl++ ++   r Ei +L +++N+M+d+Lr
  CCE31052.1 289 MAQNLTDQVREIASVTTAVAHGDLTKKIERPARGEILQLQQTINTMVDQLR 339
                 78899999******************************************8 PP

  == domain 3  score: 24.9 bits;  conditional E-value: 1.8e-08
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLre 53 
                 +a++++  +r + +++ ++a+Gdl++ +  + r Ei eL  ++N M+d+L +
  CCE31052.1 381 MANNLTTQVRDIIKVTTAVAKGDLTQKVQADCRGEIFELKSTINSMVDQLSQ 432
                 78999********************************************975 PP

  == domain 4  score: 32.5 bits;  conditional E-value: 7.1e-11
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrL 51 
                 +a +++  +r++a+++ ++a+Gdl++ + v+ + E+ eL  ++N+M+drL
  CCE31052.1 473 MAMNLTTQVREIAKVTTAVAKGDLTKKIGVEVKGEVLELKNTINQMVDRL 522
                 57889999*****************************************9 PP

  == domain 5  score: 28.3 bits;  conditional E-value: 1.5e-09
                 HHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   3 arrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 a +++  +r +++++++ia+Gd +++++v  + Ei  L +++N+M+ rL 
  CCE31052.1 566 ASNLTVQVRSISAVTQAIANGDMSQTIDVQANGEIQILKETINNMVSRLS 615
                 77888899***************************************996 PP

  == domain 6  score: 17.4 bits;  conditional E-value: 3.7e-06
                 HT.TTBTSSTCCTTSSSHHHHHHHHHHHHHHHHHH CS
        HAMP  20 ia.aGdldtrlpvsgrDEiGeLarafNaMldrLre 53 
                 +a +Gd+++ ++v+   E++eL r +N+M+ +Lr+
  CCE31052.1 674 LAtDGDFTKLVDVEASGEMDELKRKINQMISNLRD 708
                 3336*****************************96 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.4   6.1e-33   6.9e-30       1     108 [.     838     954 ..     838     958 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 6.1e-33
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE..EE.......TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTT CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveika..se.......ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmg 89 
                 gd+ rLrqii nlv+Na+kf t+ ge++++ik   ++         +++ veD+GiGi k++l+++f+ f+q d+s +r+ ggtGlGlsi+k+lv+lmg
  CCE31052.1 838 GDSFRLRQIILNLVGNAIKF-TEHGEVSLTIKEraNQqdvgggeYSIEFIVEDTGIGIAKDKLNLIFDTFQQaDGSMTRKFGGTGLGLSISKRLVNLMG 935
                 6899****************.999***99999765115677755777888***********************99************************ PP

                 TEEEEEEETTTEEEEEEEE CS
   HATPase_c  90 GeiwvesepgrGttftftl 108
                 G++wv se g+G++f+ft 
  CCE31052.1 936 GDLWVLSEAGKGSQFHFTC 954
                 ****************986 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       8.4   9.4e+03      59     103 ..    1034    1079 ..    1031    1083 .. 0.72
   2 !   87.9   0.2   4.3e-28   4.8e-25       1     111 [.    1108    1222 ..    1108    1223 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 8.4
                    HHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTESEEEESSG- CS
  Response_reg   59 lellkeireed..pelpviiltahseeedavealkagaddflsKpfd 103 
                    +++++++r+ d  + lp+++l     +  ++ +l++g+  +++ p++
    CCE31052.1 1034 IDTARRLRAVDdfKYLPIVLLAPVV-HVSLKSCLDLGITSYMTTPCT 1079
                    6777888877766778888887444.467888999999999887765 PP

  == domain 2  score: 87.9 bits;  conditional E-value: 4.3e-28
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT.....TTSEEEEEESSTSHHHHHHHH CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed.....pelpviiltahseeedaveal 90  
                    +l+++D+ ++++l  ++le+    +v+++ +g ea+e +ke+k+d+il+D++mp m G+e++ +ire +     + +p+i+ltah+   d+++++
    CCE31052.1 1108 ILLAEDNTVNQRLAVKILEKYRH-VVTVVGNGWEAVEAVKEKKFDVILMDVQMPIMGGFEATGKIREYErgmgaHRTPIIALTAHAMTGDREKCI 1201
                    89*****************9999.9******************************************998888888******************* PP

                    HCTESEEEESSG-HHHHHHHH CS
  Response_reg   91 kagaddflsKpfdpeeLlkal 111 
                    +a +d++lsKp+++++L++ +
    CCE31052.1 1202 QAQMDEYLSKPLQQNHLIQTI 1222
                    *****************9976 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.7     2e+03      44      63 ..     324     343 ..     286     346 .. 0.68
   2 !   59.9   0.6   1.6e-19   1.8e-16       2      66 ..     727     790 ..     726     791 .. 0.96
   3 ?   -2.8   0.0       6.2   6.9e+03      17      41 ..    1185    1209 ..    1182    1229 .. 0.37

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHHHHHCC CS
       HisKA  44 iesearrldhlvedlLdlsr 63 
                 i +  + ++ +v++l+++++
  CCE31052.1 324 ILQLQQTINTMVDQLRTFAS 343
                 33444578888888888876 PP

  == domain 2  score: 59.9 bits;  conditional E-value: 1.6e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 +++fla+++HE+rtP+++i+g++++  ++ +lt+ ++e+l+++ + a+ l+ +++d+Ldls+iea
  CCE31052.1 727 KSEFLANMSHEIRTPMNGIIGMTQLTLDT-DLTQYQREMLNIVNNLANSLLTIIDDILDLSKIEA 790
                 89***********************8885.8********************************98 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.2
                  HHHHHHHHHHHHC..........T-HSSCHHHH CS
       HisKA   17 LsailgnaeaLkre........gklteelkeyl 41  
                  + a+ + a +  re        +        yl
  CCE31052.1 1185 IIALTAHAMTGDREkciqaqmdE--------YL 1209
                  54444444443443343222221........22 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.4       1.3   1.5e+03      39      89 ..     148     208 ..     127     214 .. 0.49
   2 ?    1.3   0.0       0.4   4.5e+02       8      61 ..     198     251 ..     184     266 .. 0.72
   3 ?    3.4   0.0     0.087        97       3      63 ..     244     307 ..     242     333 .. 0.83
   4 ?    2.7   0.0      0.15   1.7e+02       4      72 ..     337     410 ..     323     412 .. 0.76
   5 ?    5.5   0.0      0.02        22       3      63 ..     428     491 ..     423     521 .. 0.86
   6 !    6.8   0.1    0.0078       8.7      12      67 ..     529     595 ..     507     629 .. 0.66
   7 ?    6.0   2.5     0.013        15      23      95 ..     635     716 ..     603     773 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.3
  Syntaxin_2  39 ieeinelikktnellkklsqldnsssds..........qqklqkekLkkdfkealqeFqki 89 
                  ++ ++ +  +n++l++ ++l++  +            ++  +++k ++ f++al+e  +i
  CCE31052.1 148 LNSQRQELAGVNAQLREQKELQERALAVleqervatleRELWKHQKANEAFQKALREIGEI 208
                 3333333334444444444444444333665555555444456666666666666665555 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.4
  Syntaxin_2   8 insnvstleklvkqLgtkkdteelreklhelieeinelikktnellkklsqldn 61 
                 +++ ++++++ v+ +     t+++r +  e+  ei++  +++n+ + +l+  + 
  CCE31052.1 198 FQKALREIGEIVTAVARGDLTMKVRMNTVEMDPEITTFKRTINAMMDQLQIFAS 251
                 334444444444444444449999999999999999999999999999988765 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.087
  Syntaxin_2   3 snlqkinsnvstleklvkq...Lgtkkdteelreklhelieeinelikktnellkklsqldnss 63 
                 ++lq ++s vs   + v +   Lg +     ++   +el++++n ++++ +++++++++++   
  CCE31052.1 244 DQLQIFASEVSRVAREVGTeglLGGQARIGGVDGTWKELTDNVNVMAQNLTDQVREIASVTTAV 307
                 6888889999999999888888899888999999999*******************99987765 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.15
  Syntaxin_2   4 nlqkinsnvstleklvkq...Lgtkkdteelreklhelieeinelikktnellkklsqldnsssds..qqklqk 72 
                 +l +++s v+   + v +   Lg + d   ++   ++l+ ++n ++++ + +++++ +++    +   +qk+q+
  CCE31052.1 337 QLRTFASEVTRVARDVGTegiLGGQADVGGVKGMWNDLTVNVNAMANNLTTQVRDIIKVTTAVAKGdlTQKVQA 410
                 66677777777777777777778888888888888999999999999999999998888777765567777765 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.02
  Syntaxin_2   3 snlqkinsnvstleklvkq...Lgtkkdteelreklhelieeinelikktnellkklsqldnss 63 
                 ++l+++++ v+++ + v +   Lg +    ++    ++l+e++n ++ + + +++++++++   
  CCE31052.1 428 DQLSQFAREVTKIAREVGTegrLGGQATVHDVEGTWRDLTENVNGMAMNLTTQVREIAKVTTAV 491
                 68999************99999999999999***********************9999987765 PP

  == domain 6  score: 6.8 bits;  conditional E-value: 0.0078
  Syntaxin_2  12 vstleklvkq...Lgtkkdteelreklhelieeinelikktnellkklsqldnsssds........q 67 
                 vs+  + v +   Lg + +  ++  k ++l+e++n+++++ + +++++s++++   +         q
  CCE31052.1 529 VSKVAREVGTdgtLGGQAQVANVEGKWKDLTENVNTMASNLTVQVRSISAVTQAIANGdmsqtidvQ 595
                 444444444434466667799999************************9998876655665555543 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.013
  Syntaxin_2  23 gtkkdteelreklhelieeinelikktnellkklsqldnsssds........qqklqkekLkkdfkealqeFqk.iqrqyae 95 
                 g + d   l+ + +e+++++n+++++ + +++ +s ++n   d             + + Lk+++++ ++++   iqr+ + 
  CCE31052.1 635 GAQADVAGLNGRWKEITTDVNTMASNLTTQVRAFSDITNLATDGdftklvdvEASGEMDELKRKINQMISNLRDsIQRNTQA 716
                 4556777777778888888888888888888888888887776677665554333356666666666666665313444443 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.4   4.9e+03      33      71 ..     130     168 ..     127     177 .. 0.70
   2 !   10.8   0.3   0.00038      0.42      34     114 ..     178     256 ..     165     261 .. 0.89
   3 ?    3.9   0.1      0.05        56      50     111 ..     286     345 ..     277     353 .. 0.73
   4 !    9.1   0.1    0.0013       1.4      49     113 ..     377     439 ..     368     445 .. 0.87
   5 ?    2.2   0.1      0.16   1.8e+02      48     104 ..     468     522 ..     453     536 .. 0.78
   6 ?    2.5   0.8      0.13   1.5e+02      52     118 ..     564     614 ..     545     626 .. 0.51
   7 ?    5.3   3.4     0.018        21      24     105 ..     690     772 ..     687     790 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.4
                 CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  33 vkkdlekleneleeisnstkeaeelvkeikdslrekqks 71 
                 +k+ le l++++++ s+  ++ ++    ++ +lre+++ 
  CCE31052.1 130 TKEALEGLREHVDDQSKLLNSQRQELAGVNAQLREQKEL 168
                 466777777777777777777777777777777766654 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00038
                 CHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH CS
   Fib_alpha  34 kkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesn 114
                 ++++++le+el ++++ ++  ++  +ei +++++  + +   +  ++  + e++ ei+++k+ti+a + +++   + +++ 
  CCE31052.1 178 QERVATLERELWKHQKANEAFQKALREIGEIVTAVARGDL--TMKVRMNTVEMDPEITTFKRTINAMMDQLQIFASEVSRV 256
                 5799***************************999888887..7888999999999***************99988777765 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHH CS
   Fib_alpha  50 stkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvl 111
                  +  a++l+ +++++   + + ++    ++kk+++  + eil+l++ti++ + ++r   + +
  CCE31052.1 286 VNVMAQNLTDQVREIASVTTAVAH--GDLTKKIERPARGEILQLQQTINTMVDQLRTFASEV 345
                 444455666666666655555555..7999999999999**********9999999877665 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0013
                 CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHH CS
   Fib_alpha  49 nstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvles 113
                 n +  a++l+++++d+++ + + +k    +++k++ +++ ei +lk ti++ + ++ +    + +
  CCE31052.1 377 NVNAMANNLTTQVRDIIKVTTAVAK--GDLTQKVQADCRGEIFELKSTINSMVDQLSQFAREVTK 439
                 56778999************99999..69************************999887666555 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.16
                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHH CS
   Fib_alpha  48 snstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesni 104
                 +n +  a +l+++++++ + + + +k    ++kk+  e++ e+l+lk+ti++ + ++
  CCE31052.1 468 ENVNGMAMNLTTQVREIAKVTTAVAK--GDLTKKIGVEVKGEVLELKNTINQMVDRL 522
                 44555677889999999888888888..6999******************9988776 PP

  == domain 6  score: 2.5 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH.HHHHHHHHHHHHHHHHH CS
   Fib_alpha  52 keaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqe.snirvLqnvlesneqki 118
                 + a++l+++++++ + +q+ ++                  ++ +tid q   +i+ L++++++ ++++
  CCE31052.1 564 TMASNLTVQVRSISAVTQAIAN-----------------GDMSQTIDVQAnGEIQILKETINNMVSRL 614
                 3333344444444333333333.................34555666665556666666666555554 PP

  == domain 7  score: 5.3 bits;  conditional E-value: 0.018
                 HCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHCCCHHHHHHHCCHHHHH CS
   Fib_alpha  24 dlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn.dnvikksskeleeeilrlketidaqesnir 105
                 + +++ ++++++ +++l+++++++++  + ae   k+ ++ l++  ++ +   + +i   + +l+++ +++++++ + ++n+ 
  CCE31052.1 690 GEMDELKRKINQMISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPmNGIIGMTQLTLDTDLTQYQREMLNIVNNLA 772
                 679999****************9999877777666666666666555554435999999999***********9999997764 PP

>> DUF3829  Protein of unknown function (DUF3829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0031       3.5     214     278 ..     271     338 ..     177     340 .. 0.82
   2 ?   -0.4   0.0      0.56   6.2e+02     197     240 ..     384     444 ..     369     458 .. 0.59
   3 !   10.0   0.1    0.0004      0.44     200     277 ..     428     521 ..     405     523 .. 0.75
   4 ?    1.8   0.2      0.12   1.3e+02     215     277 ..     551     613 ..     538     616 .. 0.87
   5 ?   -0.8   0.2      0.78   8.7e+02     260     277 ..     688     705 ..     636     735 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0031
     DUF3829 214 r...kkpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallrkynelidey 278
                 r    +  + +++++++ + +++++ +r+i++ +++  + +  +k+  ++ g   +l++ +n ++d+ 
  CCE31052.1 271 RiggVDGTWKELTDNVNVMAQNLTDQVREIASVTTAVAHGDLTKKIERPARGEILQLQQTINTMVDQL 338
                 26667789************************99998888777779999****************986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.56
     DUF3829 197 dlekaleklekaskeekr.................kkpalesfkssakeflaaarkiirri 240
                 +l+++++++ k++++ ++                  k  ++s+++++ +f  +++ki r++
  CCE31052.1 384 NLTTQVRDIIKVTTAVAKgdltqkvqadcrgeifeLKSTINSMVDQLSQFAREVTKIAREV 444
                 4444444444444444444445555555555555533344777777777777777777665 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.0004
     DUF3829 200 kaleklekaskeekr................kkpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallrkynelide 277
                  +l+++    ++ +r                 +  +++++++++++ +++++ +r+i++ +++  + +  +k++  v+g + +l + +n+++d+
  CCE31052.1 428 DQLSQFAREVTKIARevgtegrlggqatvhdVEGTWRDLTENVNGMAMNLTTQVREIAKVTTAVAKGDLTKKIGVEVKGEVLELKNTINQMVDR 521
                 33333333333333333345557777777778899************************99999888877779999****************97 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.12
     DUF3829 215 kkpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallrkynelide 277
                  + ++ +++++++++ ++++  +r i   + +  + ++ + +  +++g  + l + +n+++++
  CCE31052.1 551 VEGKWKDLTENVNTMASNLTVQVRSISAVTQAIANGDMSQTIDVQANGEIQILKETINNMVSR 613
                 667899**********************99999999888889999****************87 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.78
     DUF3829 260 vegspeallrkynelide 277
                 ++g   +l rk+n++i+ 
  CCE31052.1 688 ASGEMDELKRKINQMISN 705
                 344444444444444443 PP

>> DUF4279  Domain of unknown function (DUF4279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0         1   1.1e+03      51      82 ..     234     265 ..     226     283 .. 0.88
   2 ?    1.1   0.0      0.39   4.3e+02      51      81 ..     326     356 ..     319     361 .. 0.87
   3 ?    3.5   0.0     0.073        81      50      84 ..     417     451 ..     406     481 .. 0.82
   4 ?    3.7   0.0     0.061        68      50      84 ..     509     543 ..     499     573 .. 0.79
   5 ?   -3.0   0.0       7.5   8.4e+03      50      73 ..     693     716 ..     684     725 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1
     DUF4279  51 dleeqldklldrlepkaekikelakkygleiy 82 
                 +++  ++ + d+l+ +a+++ ++a++ g e  
  CCE31052.1 234 TFKRTINAMMDQLQIFASEVSRVAREVGTEGL 265
                 678899******************98887655 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.39
     DUF4279  51 dleeqldklldrlepkaekikelakkyglei 81 
                 +l+  +++++d+l  +a+++ ++a++ g e 
  CCE31052.1 326 QLQQTINTMVDQLRTFASEVTRVARDVGTEG 356
                 67889*******************9988765 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.073
     DUF4279  50 ldleeqldklldrlepkaekikelakkygleiylq 84 
                 ++l+  +++++d+l+++a ++ ++a++ g e +l+
  CCE31052.1 417 FELKSTINSMVDQLSQFAREVTKIAREVGTEGRLG 451
                 678899********************998887775 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.061
     DUF4279  50 ldleeqldklldrlepkaekikelakkygleiylq 84 
                 l+l++ +++++drl  +a ++ ++a++ g + +l+
  CCE31052.1 509 LELKNTINQMVDRLGTFAVEVSKVAREVGTDGTLG 543
                 68999*********************988877765 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 7.5
     DUF4279  50 ldleeqldklldrlepkaekikel 73 
                 ++l+ +++++++ l +++++  + 
  CCE31052.1 693 DELKRKINQMISNLRDSIQRNTQA 716
                 567778888888887777665555 PP

>> GatB_Yqey  GatB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.8     2e+03      37      82 ..     295     337 ..     278     343 .. 0.74
   2 ?   -1.9   0.1       2.4   2.7e+03      42      83 ..     389     430 ..     371     446 .. 0.75
   3 ?   10.1   0.1   0.00051      0.57      37      89 ..     479     528 ..     457     538 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.8
                 CSSTTHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHHTXXHHHHHHH CS
   GatB_Yqey  37 elkltpeqlaellkliaegkIskkiakevleelleegkspeeiiee 82 
                 +   + +++a + + +a g+++kki +    e+l+ ++++++++++
  CCE31052.1 295 D---QVREIASVTTAVAHGDLTKKIERPARGEILQLQQTINTMVDQ 337
                 3...34789999999*********9999998988888888887765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHTTSSGHHHHHHHHHHHHHHTXXHHHHHHHC CS
   GatB_Yqey  42 peqlaellkliaegkIskkiakevleelleegkspeeiieek 83 
                  +++ ++ + +a+g++++k   +   e++e ++++++++++ 
  CCE31052.1 389 VRDIIKVTTAVAKGDLTQKVQADCRGEIFELKSTINSMVDQL 430
                 467888888999999999999999999998899988888764 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00051
                 CSSTTHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHHTXXHHHHHHHCTXXXXX CS
   GatB_Yqey  37 elkltpeqlaellkliaegkIskkiakevleelleegkspeeiieekgLkqis 89 
                     + +++a++ + +a+g+++kki+ ev  e+le ++++++++++ g ++++
  CCE31052.1 479 T---QVREIAKVTTAVAKGDLTKKIGVEVKGEVLELKNTINQMVDRLGTFAVE 528
                 3...56899*************************99*********99988776 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.8    0.0035         4      18     151 ..     140     344 ..     123     358 .. 0.76
   2 ?    2.4   0.0     0.089     1e+02      91     153 ..     372     438 ..     358     452 .. 0.78
   3 ?    4.5   8.0     0.021        24      20     166 ..     545     723 ..     395     738 .. 0.74
   4 ?   -1.9   0.1       1.8     2e+03      77     131 ..     722     785 ..     720     799 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0035
     DUF4795  18 klqeelekleekvkelekrledkekklealkkqieelekvkadkeeveeelaekadk...eaLatkvsrdq....................fDeakkeL 93 
                 +++++ + l+++ +el +  ++++++ e  + ++ +le++     e e++ ++ka+    +aL+      +                    +D  ++ +
  CCE31052.1 140 HVDDQSKLLNSQRQELAGVNAQLREQKELQERALAVLEQERVATLERELWKHQKANEafqKALREIG---EivtavargdltmkvrmntveMDPEITTF 235
                 3444444467777777777777777777777777777777766666666666666531112333322...13446666667777777779999999999 PP

     DUF4795  94 ekmleellekle..........................eqeealkkaldtLq......................eelkekld...rlelepLkeqleer 141
                 ++ ++ ++++l+                          +++  +k++ d+++                       +l++k++   r e+ +L++ ++  
  CCE31052.1 236 KRTINAMMDQLQifasevsrvarevgtegllggqarigGVDGTWKELTDNVNvmaqnltdqvreiasvttavahGDLTKKIErpaRGEILQLQQTINTM 334
                 99999999999999999999999999***********99999999999999999999999999*********9*9**********************99 PP

     DUF4795 142 lkelqkelqe 151
                 +++l++   e
  CCE31052.1 335 VDQLRTFASE 344
                 9999976655 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.089
     DUF4795  91 keLekmleellekleeqeealkkaldtLq.eelkekld...rlelepLkeqleerlkelqkelqeam 153
                 ++L+ +++ + + l+ q +++ k+   +   +l++k+    r e+ +Lk+ +++ +++l++  +e +
  CCE31052.1 372 NDLTVNVNAMANNLTTQVRDIIKVTTAVAkGDLTQKVQadcRGEIFELKSTINSMVDQLSQFAREVT 438
                 556666677777777777777777777766799999999999***********99999996666544 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.021
     DUF4795  20 qeelekleekvkelekrledkekklealkkqieelekvkadkeeveeelaekad......keaLatkvsrdq....................fDeakke 92 
                 q++++++e+k k+l ++ ++  ++l +   +i++  ++ a+  ++++ +++ a+      ke+++++vsr                             
  CCE31052.1 545 QAQVANVEGKWKDLTENVNTMASNLTVQVRSISAVTQAIAN-GDMSQTIDVQANgeiqilKETINNMVSRLSsfcyevqrvakdvgvdgkmgA------ 636
                 55666666666666666666666666666666666666666.666666666665221111444444444444444443333333333333331...... PP

     DUF4795  93 LekmleellekleeqeealkkaldtLq......................eelkekld...rlelepLkeqleerlkelqkelqeamekedkedeaaglr 166
                            + +   ++k++  +++                       + ++ +d     e+++Lk ++++ + +l++ +q  +++++    aa+l 
  CCE31052.1 637 --------QADVAGLNGRWKEITTDVNtmasnlttqvrafsditnlatdGDFTKLVDveaSGEMDELKRKINQMISNLRDSIQRNTQARE----AAELA 723
                 ........222334444444444444444444445555555666666666666677799999*********************7666664....44443 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.8
     DUF4795  77 LatkvsrdqfDeakkeLekmleellek........leeqeealkkaldtLqeelkekld.rlel 131
                 La+k+  + + ++  e++  ++ ++ +        l++ ++++  ++++L ++l + +d  l+l
  CCE31052.1 722 LANKTKSEFLANMSHEIRTPMNGIIGMtqltldtdLTQYQREMLNIVNNLANSLLTIIDdILDL 785
                 6666666667777777777777777775555555566999999999999998887777754444 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1         9     1e+04      47      68 ..     142     163 ..     130     172 .. 0.60
   2 ?    6.0   4.3     0.013        14      39      79 ..     261     309 ..     205     318 .. 0.76
   3 ?    8.0   3.6     0.003       3.4      23      79 ..     337     401 ..     313     410 .. 0.80
   4 ?    3.5   5.6     0.075        84      29      79 ..     428     493 ..     411     537 .. 0.72
   5 ?    8.3   3.6    0.0024       2.7      30      79 ..     528     585 ..     499     594 .. 0.77
   6 ?    2.2   0.2      0.19   2.1e+02      33      71 ..     638     662 ..     594     678 .. 0.49
   7 ?   -0.3   0.1       1.2   1.3e+03      41      59 ..     691     709 ..     680     730 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9
      DUF948  47 kevedllakvnelledvnekle 68 
                 ++  +ll+  ++ l++vn +l 
  CCE31052.1 142 DDQSKLLNSQRQELAGVNAQLR 163
                 4444556666666666666665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.013
      DUF948  39 e........kqvdpilkevedllakvnelledvneklekvdplteavad 79 
                 +         +++++    ++l+++vn++++++++++ ++ ++t+ava+
  CCE31052.1 261 GtegllggqARIGGVDGTWKELTDNVNVMAQNLTDQVREIASVTTAVAH 309
                 2555555556677777778899999999*****************9984 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.003
      DUF948  23 klkktldeaaatieele........kqvdpilkevedllakvnelledvneklekvdplteavad 79 
                 +l+  ++e+++  ++++         +v+++    +dl+ +vn+++++++ ++ ++ ++t+ava+
  CCE31052.1 337 QLRTFASEVTRVARDVGtegilggqADVGGVKGMWNDLTVNVNAMANNLTTQVRDIIKVTTAVAK 401
                 34444455555555555999999999*************************************85 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.075
      DUF948  29 deaaatieele...............kqvdpilkevedllakvnelledvneklekvdplteavad 79 
                 d+++++ +e++                 v+ +    +dl+++vn ++ +++ ++ ++ ++t+ava+
  CCE31052.1 428 DQLSQFAREVTkiarevgtegrlggqATVHDVEGTWRDLTENVNGMAMNLTTQVREIAKVTTAVAK 493
                 333333333333333444666666665666666666667777777777777788888888888864 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0024
      DUF948  30 eaaatieele........kqvdpilkevedllakvnelledvneklekvdplteavad 79 
                 e+++  +e++         qv ++  + +dl+++vn+++++++ ++ ++ ++t+a+a+
  CCE31052.1 528 EVSKVAREVGtdgtlggqAQVANVEGKWKDLTENVNTMASNLTVQVRSISAVTQAIAN 585
                 44444444446666666689999999999**************************986 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.19
      DUF948  33 atieelekqvdpilkevedllakvnelledvneklekvd 71 
                 a +++l+ + ++i+++v+++ ++                
  CCE31052.1 638 ADVAGLNGRWKEITTDVNTMASNL--------------T 662
                 223333333333333333333333..............2 PP

  == domain 7  score: -0.3 bits;  conditional E-value: 1.2
      DUF948  41 qvdpilkevedllakvnel 59 
                 ++d++ +++++++++ ++ 
  CCE31052.1 691 EMDELKRKINQMISNLRDS 709
                 4455555555555554442 PP

>> GLE1  GLE1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.9   3.3e+03      17      42 ..      47      72 ..      43      78 .. 0.86
   2 ?   -0.1   0.0      0.38   4.3e+02      23      98 ..     231     308 ..     217     310 .. 0.75
   3 ?    4.8   0.1     0.012        14      17      98 ..     317     400 ..     284     402 .. 0.75
   4 ?    5.4   0.1    0.0079       8.9       9      52 ..     403     444 ..     398     493 .. 0.83
   5 ?   -3.9   0.2       5.6   6.3e+03      23      54 ..     554     585 ..     546     613 .. 0.60
   6 ?    0.5   0.1      0.26   2.9e+02      19      60 ..     687     727 ..     650     774 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.9
        GLE1 17 dkelkkllgdlkrkInpkvgQltnss 42
                d+++k  l +  rk + +vgQl + +
  CCE31052.1 47 DSAAKRALEAELRKLTLRVGQLESRA 72
                889999999999**********9876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.38
        GLE1  23 llgdlkrkInpkvgQltnsseqlkkitkel..kellesgkpvkvadk.pelaykyllnflAkalvsqaetevsakpeaA 98 
                  +++ kr In  + Ql+  +++++++++e+  + ll  + ++  +d   ++ ++  +n++A++l +q+ + +s++++ A
  CCE31052.1 231 EITTFKRTINAMMDQLQIFASEVSRVAREVgtEGLLGGQARIGGVDGtWKE-LTDNVNVMAQNLTDQVREIASVTTAVA 308
                 567889***********999******9998434577555555444444233.577889999999999998888877766 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.012
        GLE1  17 dkelkkllgdlkrkInpkvgQltnsseqlkkitkel..kellesgkpvkvadk....pelaykyllnflAkalvsqaetevsakpeaA 98 
                 +++++  + +l++ In+ v Ql++ +++++++++++  + +l  + +v  ++     ++  ++  +n +A++l  q+   + ++++ A
  CCE31052.1 317 ERPARGEILQLQQTINTMVDQLRTFASEVTRVARDVgtEGILGGQADV--GGVkgmwND--LTVNVNAMANNLTTQVRDIIKVTTAVA 400
                 667788899999999999999999999999999998334566444443..333455444..488888889888888888887776665 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0079
        GLE1   9 nlleqvkedkelkkllgdlkrkInpkvgQltnsseqlkkitkel 52 
                 +l ++v  +++ +  +++lk  In  v Ql++ + +++ki++e+
  CCE31052.1 403 DLTQKV--QADCRGEIFELKSTINSMVDQLSQFAREVTKIAREV 444
                 555544..6789****************************9997 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 5.6
        GLE1  23 llgdlkrkInpkvgQltnsseqlkkitkelke 54 
                 +++dl+ ++n+  + lt +  +++ +t+++ +
  CCE31052.1 554 KWKDLTENVNTMASNLTVQVRSISAVTQAIAN 585
                 45556666666666666665555555555544 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.26
        GLE1  19 elkkllgdlkrkInpkvgQltnsseqlkkitkelkellesgk 60 
                 e+   + +lkrkIn  ++ l+ s  q ++ ++e  el +++k
  CCE31052.1 687 EASGEMDELKRKINQMISNLRDSI-QRNTQAREAAELANKTK 727
                 556677889999999999998888.33444444455555555 PP

>> BORCS6  BLOC-1-related complex sub-unit 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.18   2.1e+02      65      91 ..     279     305 ..     206     320 .. 0.85
   2 ?    3.1   0.1     0.087        98      56      91 ..     454     489 ..     378     495 .. 0.79
   3 ?    6.9   0.1    0.0062       6.9      58      91 ..     548     581 ..     539     596 .. 0.91
   4 ?   -0.3   0.0         1   1.1e+03      61      90 ..     643     672 ..     599     685 .. 0.85
   5 ?   -1.8   0.1       2.8   3.2e+03      57      86 ..     682     713 ..     657     717 .. 0.61
   6 ?   -0.6   0.3       1.2   1.4e+03      11      87 ..     705     783 ..     692     799 .. 0.57

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.18
      BORCS6  65 aqkvaasvdnllenlssklhsisaltv 91 
                  ++++++v+ + +nl+ ++++i+++t 
  CCE31052.1 279 WKELTDNVNVMAQNLTDQVREIASVTT 305
                 5789999999********999999986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.087
      BORCS6  56 nvlsdlereaqkvaasvdnllenlssklhsisaltv 91 
                   ++d+e   ++++++v+ +  nl++++++i+ +t 
  CCE31052.1 454 ATVHDVEGTWRDLTENVNGMAMNLTTQVREIAKVTT 489
                 5689999*********************99998885 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0062
      BORCS6  58 lsdlereaqkvaasvdnllenlssklhsisaltv 91 
                 ++++e + ++++++v+++ +nl+ +++sisa+t 
  CCE31052.1 548 VANVEGKWKDLTENVNTMASNLTVQVRSISAVTQ 581
                 67899999************************95 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1
      BORCS6  61 lereaqkvaasvdnllenlssklhsisalt 90 
                 l+ + +++++ v+++ +nl+++++  s +t
  CCE31052.1 643 LNGRWKEITTDVNTMASNLTTQVRAFSDIT 672
                 666678999999999999999999999887 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 2.8
      BORCS6  57 vlsdler..eaqkvaasvdnllenlssklhsi 86 
                  l d+e+  e +++ ++++++++nl+ ++++ 
  CCE31052.1 682 KLVDVEAsgEMDELKRKINQMISNLRDSIQRN 713
                 44555542245677777777777777777665 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 1.2
      BORCS6  11 dLeekiklsssvskkeessslsesstpsaslskqllaaq...ipeidpnvlsdlereaqkvaasvdnllenlssklhsis 87 
                 +L+  i+  +++ + +e   ++++s+  a++s+  +++    i     ++ +dl +  +++ + v+nl ++l +++++i 
  CCE31052.1 705 NLRDSIQRNTQAREAAE-LANKTKSEFLANMSHEIRTPMngiIGMTQLTLDTDLTQYQREMLNIVNNLANSLLTIIDDIL 783
                 56666666665444443.33344444555555555555533333334444456777777777777777777766666654 PP

>> GhoS  Endoribonuclease GhoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.3   3.7e+03      43      74 ..     276     306 ..     269     314 .. 0.56
   2 ?   10.0   0.1   0.00059      0.66      34      85 ..     451     504 ..     421     507 .. 0.84
   3 ?    3.0   0.2     0.093     1e+02      37      84 ..     546     595 ..     534     601 .. 0.85
   4 ?   -2.3   0.1       3.9   4.4e+03      24      65 ..     669     710 ..     648     729 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.3
                 SS-EEE-TTSEEEE---S-HHHHHHHHHHGGG CS
        GhoS  43 eGkpheLgtntfglisalseeeieelaaglae 74 
                 +G+ +eL  n   +++    ++++e a+  + 
  CCE31052.1 276 DGTWKELTDNVN-VMAQNLTDQVREIASVTTA 306
                 566666655543.3333334555555555554 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00059
                 TEESEEE-SSS-EEE-TTSEEEE---S-HH..HHHHHHHHGGGTSS----EEEE CS
        GhoS  34 gFsltlaDeeGkpheLgtntfglisalsee..eieelaaglaesalgkkpevev 85 
                 g + t+ D eG+ ++L +n  g+   l+ +  ei++ + + a+  l kk  vev
  CCE31052.1 451 GGQATVHDVEGTWRDLTENVNGMAMNLTTQvrEIAKVTTAVAKGDLTKKIGVEV 504
                 66789***************9999888765448888888999888889988887 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.093
                 SEEE-SSS-EEE-TTSEEEE---S-HH..HHHHHHHHGGGTSS----EEE CS
        GhoS  37 ltlaDeeGkpheLgtntfglisalsee..eieelaaglaesalgkkpeve 84 
                   +a  eGk ++L +n   + s l+ +   i + +++ a+  + ++ +v+
  CCE31052.1 546 AQVANVEGKWKDLTENVNTMASNLTVQvrSISAVTQAIANGDMSQTIDVQ 595
                 67999****************99986533699999999999888888887 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 3.9
                 HHHHHHHHHTTEESEEE.-SSS-EEE-TTSEEEE---S-HHHH CS
        GhoS  24 nelnsvltragFsltla.DeeGkpheLgtntfglisalseeei 65 
                  ++ ++ t+  F+  +   + G++ eL      +is l ++ i
  CCE31052.1 669 SDITNLATDGDFTKLVDvEASGEMDELKRKINQMISNLRDS-I 710
                 45566667777766553245688888888888888887654.3 PP

>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       6.4   7.2e+03      24      55 ..     136     167 ..     132     201 .. 0.71
   2 ?    0.0   0.0       1.3   1.4e+03      26      75 ..     413     469 ..     392     473 .. 0.71
   3 ?   -2.3   0.0       6.7   7.5e+03      45      76 ..     531     562 ..     507     566 .. 0.58
   4 ?    8.2   1.7    0.0036       4.1       4      57 ..     665     726 ..     662     788 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6.4
      PMC2NT  24 efaksldeqserllslinsllklaaskseisa 55 
                 ++++++d+qs+ l s  ++l+   a+ +e+++
  CCE31052.1 136 GLREHVDDQSKLLNSQRQELAGVNAQLREQKE 167
                 67788888888777777777666666655544 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.3
      PMC2NT  26 aksldeqserllslinsllklaaskseisas.......sklededdveekfksvvdv 75 
                 + ++ e ++++ s++++l + a + ++i  +         + ++ dve  ++++++ 
  CCE31052.1 413 RGEIFELKSTINSMVDQLSQFAREVTKIAREvgtegrlGGQATVHDVEGTWRDLTEN 469
                 555556666777777777777777777766677777776777888888899998875 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6.7
      PMC2NT  45 klaaskseisassklededdveekfksvvdvv 76 
                 k a + + + +   + ++ +ve k+k++++ v
  CCE31052.1 531 KVAREVGTDGTLGGQAQVANVEGKWKDLTENV 562
                 33333333322256778888999999998866 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0036
      PMC2NT   4 traanaLp..aeDldfyrsldpefaksldeqserllslinsllklaaskseisas......s 57 
                 +ra + +   a+D df + +d e + ++de ++++ ++i++l ++++ ++++++       +
  CCE31052.1 665 VRAFSDITnlATDGDFTKLVDVEASGEMDELKRKINQMISNLRDSIQRNTQAREAaelankT 726
                 667777777889*********************************99999997765544430 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.3       2.8   3.1e+03      30      57 ..     135     165 ..     125     206 .. 0.54
   2 ?    0.4   0.1      0.93     1e+03      36      69 ..     275     308 ..     227     313 .. 0.48
   3 ?    1.3   0.3      0.46   5.2e+02      16      56 ..     311     351 ..     291     355 .. 0.76
   4 ?    5.0   0.0     0.033        37       3      66 ..     419     482 ..     410     502 .. 0.65
   5 ?   -0.1   0.1       1.3   1.4e+03       3      73 ..     504     575 ..     502     588 .. 0.67
   6 ?   -2.6   0.0       7.9   8.9e+03      20      53 ..     591     624 ..     575     628 .. 0.75
   7 ?    8.2   0.2    0.0032       3.6      17      62 ..     680     723 ..     667     732 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.8
      DUF883  30 eelRerleer...lerarerlrdaeeavaer 57 
                 e lRe ++++   l++ r++l+ ++ +++e+
  CCE31052.1 135 EGLREHVDDQsklLNSQRQELAGVNAQLREQ 165
                 3444444332111233333333333333332 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.93
      DUF883  36 leerlerarerlrdaeeavaerakeaaeaaddyV 69 
                 ++ + +++ ++++ +++++ ++++e+a  +  ++
  CCE31052.1 275 VDGTWKELTDNVNVMAQNLTDQVREIASVTTAVA 308
                 3334444445555555555555555555554443 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.46
      DUF883  16 ellkeaadeageeaeelRerleerlerarerlrdaeeavae 56 
                 +l+k+ ++ a+ e+ +l + ++ +++++r  ++++++ +++
  CCE31052.1 311 DLTKKIERPARGEILQLQQTINTMVDQLRTFASEVTRVARD 351
                 57888888899999999999999999999888888777665 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.033
      DUF883   3 leaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaad 66 
                 l++ ++s++++l ++++e  + a+e   e R   +++++++  + rd++e+v   a +   +++
  CCE31052.1 419 LKSTINSMVDQLSQFAREVTKIAREVGTEGRLGGQATVHDVEGTWRDLTENVNGMAMNLTTQVR 482
                 5666677777777777777777777777777777777777777777776665544444433333 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 1.3
      DUF883   3 leaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddy.VrenP 73 
                 ++ e+ +l +++++++++ +  a e  + +Re  ++     +++++++e + ++ ++++   a +  V+ + 
  CCE31052.1 504 VKGEVLELKNTINQMVDRLGTFAVEVSKVAREVGTDGTLGGQAQVANVEGKWKDLTENVNTMASNLtVQVRS 575
                 566777888888888888888888888888888888888888888888877665555555444443333333 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 7.9
      DUF883  20 eaadeageeaeelRerleerlerarerlrdaeea 53 
                 +   +a+ e++ l+e ++++++r+ + + ++++ 
  CCE31052.1 591 TIDVQANGEIQILKETINNMVSRLSSFCYEVQRV 624
                 5556778888889999998888887777766665 PP

  == domain 7  score: 8.2 bits;  conditional E-value: 0.0032
      DUF883  17 llkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaa 62 
                 ++k    ea  e++el+++++++++++r+++++ ++  a++a e a
  CCE31052.1 680 FTKLVDVEASGEMDELKRKINQMISNLRDSIQRNTQ--AREAAELA 723
                 56667778999********************98777..33444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1461  (0.0814881); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.42
# Mc/sec: 9504.33
//
Query:       CCE31053.1  [L=1809]
Description: uncharacterized protein CPUR_04904 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-44  149.7   0.5    3.1e-43  147.3   0.7    2.3  2  BP28CT      BP28CT (NUC211) domain
    2.5e-23   82.6   0.2    2.5e-23   82.6   0.2    6.1  8  U3snoRNP10  U3 small nucleolar RNA-associated protein 10
      6e-09   35.4   5.5     0.0087   16.2   0.0    6.1  5  HEAT        HEAT repeat
     0.0012   19.1  20.2        0.1   13.0   0.5    6.8  8  HEAT_2      HEAT repeats
     0.0089   16.5  18.5       0.43   11.2   0.5    6.8  7  HEAT_EZ     HEAT-like repeat
  ------ inclusion threshold ------
       0.02   15.0   2.2        1.6    9.0   0.1    4.3  3  RTP1_C1     Required for nuclear transport of RNA pol II C-te


Domain annotation for each model (and alignments):
>> BP28CT  BP28CT (NUC211) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2   6.1e+03      84      94 ..    1431    1441 ..    1375    1473 .. 0.58
   2 !  147.3   0.7     1e-46   3.1e-43       2     158 .]    1528    1679 ..    1527    1679 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
                  HHHHHHHHHH- CS
      BP28CT   84 tfykllnklae 94  
                  + y+++ +lae
  CCE31053.1 1431 ACYGFISSLAE 1441
                  23333333333 PP

  == domain 2  score: 147.3 bits;  conditional E-value: 1e-46
                  -HHHHHHHHHHHHHHHHHHHHHT----......HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH...HHTSTT-----HHHHHHHHHHHH CS
      BP28CT    2 vsknlkelfkfflkaldlRreqaskke......eeeidevEesvieafvalvlKLneatFrPlFlklveWaeeesselskkdskeRlitfykllnkl 92  
                  ++kn+++l+++++ka+dlRr  + k+e        e++ +E++v+e+++++++KLn+a+FrPlF+++veWa++  s+++k+ ++ R+ ++y++l+++
  CCE31053.1 1528 ITKNTSALYSILMKAFDLRRLVQLKEEdkteatLGEVAVIEAKVNETALKMIFKLNDAAFRPLFVQMVEWATSGLSKKDKSGRNMRQYSIYGFLDTF 1624
                  899*****************999999888877777788*********************************6555566666666************* PP

                  H--------TTHHHHHHHHHHHHH---------HH...........HHHHHHHHHHHHHHHHGGGG CS
      BP28CT   93 aekLkslftsYasyllenavelLkalnekseeskekkkkkeekkveLlrlvlstLtkcflhDqdeF 158 
                  + +Lks++t+Ya+y++++av++L+ +n+ks+e++            L+++vl++L+ cf+hDqd+F
  CCE31053.1 1625 FGSLKSIVTNYAAYIVDDAVKILHDVNPKSAEDRL-----------LWARVLQVLAACFTHDQDDF 1679
                  **************************998887777...........*******************9 PP

>> U3snoRNP10  U3 small nucleolar RNA-associated protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.2   8.3e-27   2.5e-23       2     115 ..     247     360 ..     246     361 .. 0.97
   2 ?   -3.6   0.0       4.8   1.4e+04       2      29 ..     591     618 ..     591     621 .. 0.74
   3 ?   -1.9   0.0       1.3     4e+03      39      90 ..     674     741 ..     668     757 .. 0.49
   4 ?   -2.2   0.1       1.7   5.1e+03      32      73 ..     869     922 ..     847     965 .. 0.59
   5 ?   -1.6   0.1       1.1   3.3e+03       9      37 ..    1005    1033 ..    1003    1035 .. 0.86
   6 ?   -3.0   0.0       3.1   9.3e+03      78     113 ..    1111    1146 ..    1081    1149 .. 0.73
   7 ?    0.4   0.0      0.27   8.2e+02      18      70 ..    1425    1482 ..    1359    1530 .. 0.74
   8 ?   -1.2   0.3      0.84   2.5e+03      35      90 ..    1702    1740 ..    1689    1780 .. 0.49

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 8.3e-27
                 HHHHHHHHHHHHT-TT-HHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHT-SS-S--HHHHHHHTTSTTHHHHHHHHT CS
  U3snoRNP10   2 ltallpvllegLlssssadlqaaaymilsvLaskvpLsdkvleallesilknlskelaksallcllvlaqsqsakllpkkvlkallklpsladvLeels 100
                 l ++ p++ e L +++++ lq+a+ym ++ ++sk +L+d +++a+++++++++++e++++al+cl+++aq +sak++++kv+kal+k++++  +L++++
  CCE31053.1 247 LHRVGPIFAESLVMKKVPSLQIASYMAMAIFVSKGNLEDVAVTAFMQQTVHGWTQETVRPALVCLAIMAQFRSAKQMSSKVTKALMKVQDIGPLLVDIG 345
                 78899*********9************************************************************************************ PP

                 TTS--HHHHHHHHHH CS
  U3snoRNP10 101 keyrvdkfllallks 115
                 +e+rvdk++++l+ +
  CCE31053.1 346 RERRVDKLANGLCLA 360
                 ***********9977 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.8
                 HHHHHHHHHHHHT-.TT-HHHHHHHHHHH CS
  U3snoRNP10   2 ltallpvllegLls.sssadlqaaaymil 29 
                 ++al+p+  ++L+  s+    qaaa+ i 
  CCE31053.1 591 VQALVPYAITALSDpSKR-VRQAAAHLIA 618
                 579999999999986662.4677887765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.3
                 -HHHHHHHHHHHHHH--......GGGHHHH............HHHHHHHHHT-SS-S...--HHHHHHHTTST CS
  U3snoRNP10  39 sdkvleallesilknls......kelaksa............llcllvlaqsqsakl...lpkkvlkallklp 90 
                 +++ ++++l+si+++ +      +     +            +++l+ la + +a++   +++++lk+l++++
  CCE31053.1 674 DPEHISSVLKSIVEQGRyqvtppP-----SldkkdhmgqstrMAVLAFLAAHAEATPllqVKSRLLKSLNEVK 741
                 556666666666666332122322.....13333466666667777777766542222224455555555443 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.7
                 HHHTT-S-HHHHHHHHHHHHHH--......GGGHHHH......HHHHHHHHHT- CS
  U3snoRNP10  32 LaskvpLsdkvleallesilknls......kelaksa......llcllvlaqsq 73 
                 L   vpL+ ++l+ +l ++ ++++      +++++ +      ++++ ++  + 
  CCE31053.1 869 LLRVVPLTTEILSYFLATVQTSTKmiaepvPNSKRRTsssdanRILITQVTPET 922
                 556678888888888777766633222333333333366666655555555444 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 1.1
                  HHHHHT-TT-HHHHHHHHHHHHHHHHTT- CS
  U3snoRNP10    9 llegLlssssadlqaaaymilsvLaskvp 37  
                  l+++++ sss+ +q aa+ +++ La+ +p
  CCE31053.1 1005 LVNCIQKSSSPVVQNAALLLVANLATTAP 1033
                  6677887888899************9987 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 3.1
                  --HHHHHHHTTSTTHHHHHHHHTTTS--HHHHHHHH CS
  U3snoRNP10   78 lpkkvlkallklpsladvLeelskeyrvdkfllall 113 
                  l ++++++l +++ l ++++ l   y++++ ll ++
  CCE31053.1 1111 LFVALVETLGSRDFLFALISMLVDRYDTSDALLSFI 1146
                  666777888887778888899999999944444444 PP

  == domain 7  score: 0.4 bits;  conditional E-value: 0.27
                  -HHHHHHHHHHHHHHHHTT-.S-HHHHHHHHHHHHHH--....GGGHHHHHHHHHHHH CS
  U3snoRNP10   18 sadlqaaaymilsvLaskvp.Lsdkvleallesilknls....kelaksallcllvla 70  
                  +++l+ a+y  +s La ++p + ++ ++++l+  +++ +    +++ +s   cl +la
  CCE31053.1 1425 DEELHSACYGFISSLAEHLPyMLSTHVDKILDISYQSAEsgldEDADESRTSCLEILA 1482
                  5689999999999999999987777777887777777553442333333366666665 PP

  == domain 8  score: -1.2 bits;  conditional E-value: 0.84
                  TT-S-HHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHT-SS-S--HHHHHHHTTST CS
  U3snoRNP10   35 kvpLsdkvleallesilknlskelaksallcllvlaqsqsakllpkkvlkallklp 90  
                  ++  s++++ a+++  +++ s++ +k+  ++ll+l+                ++ +
  CCE31053.1 1702 SMDVSEDLIPAVVKLAAAADSQAHQKEINATLLKLL----------------KS-E 1740
                  333333444444333333333333333344444444................43.2 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.9e-06    0.0087       1      29 [.     594     622 ..     594     624 .. 0.92
   2 ?    1.3   0.1      0.19   5.6e+02       4      28 ..    1004    1029 ..    1003    1031 .. 0.85
   3 ?    0.6   0.0       0.3   8.9e+02       1      30 [.    1322    1352 ..    1322    1353 .. 0.90
   4 ?    2.0   0.1      0.11   3.4e+02      11      30 ..    1376    1395 ..    1372    1396 .. 0.83
   5 !   11.4   0.1    0.0001       0.3       4      28 ..    1732    1756 ..    1729    1759 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l+P  +++lsDps +VR+aAa  ++a+ e
  CCE31053.1 594 LVPYAITALSDPSKRVRQAAAHLIAAITE 622
                 68999999******************988 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.19
                  HHHHHH.T-SSHHHHHHHHHHHHHHH CS
        HEAT    4 lllkll.sDpspeVReaAakaLgala 28  
                  ll++++ +++sp V  aA++ +++la
  CCE31053.1 1004 LLVNCIqKSSSPVVQNAALLLVANLA 1029
                  68888888999999999999999987 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.3
                  HHHHHHHHH.T-SSHHHHHHHHHHHHHHHHC CS
        HEAT    1 llPlllkll.sDpspeVReaAakaLgalaev 30  
                  +lP l  ++ ++++ +   +A+ ++ ++ae+
  CCE31053.1 1322 FLPQLTAAIrESKDIRYKHTAVTCVDKIAEK 1352
                  689999999899****************996 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.11
                  -SSHHHHHHHHHHHHHHHHC CS
        HEAT   11 DpspeVReaAakaLgalaev 30  
                   ++ + R +A+++L+ l+ v
  CCE31053.1 1376 QEDQRLRVMALLCLTSLVDV 1395
                  578899***********987 PP

  == domain 5  score: 11.4 bits;  conditional E-value: 0.0001
                  HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    4 lllkllsDpspeVReaAakaLgala 28  
                  +llkll+++++ VR aA+k+  +l 
  CCE31053.1 1732 TLLKLLKSEHAPVRLAAVKCQQELT 1756
                  59******************77775 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.2   8.4e-05      0.25      28      60 ..     590     622 ..     563     638 .. 0.68
   2 ?   -2.7   0.0       2.8   8.3e+03      27      41 ..     942     956 ..     914     963 .. 0.66
   3 ?   -0.9   0.0      0.72   2.1e+03       3      29 ..    1004    1030 ..    1002    1041 .. 0.66
   4 ?   -2.8   0.1       2.9   8.7e+03      14      45 ..    1194    1229 ..    1186    1237 .. 0.51
   5 ?    2.6   0.1     0.059   1.8e+02       5      58 ..    1283    1349 ..    1275    1367 .. 0.56
   6 ?   -0.7   0.0      0.64   1.9e+03       2      56 ..    1324    1390 ..    1323    1427 .. 0.47
   7 ?   -1.5   0.0       1.1   3.3e+03      61      78 ..    1662    1679 ..    1629    1684 .. 0.79
   8 !   13.0   0.5   3.4e-05       0.1      23      81 ..    1720    1787 ..    1695    1791 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.4e-05
      HEAT_2  28 gnpealpaLvellededpavRraaaeaLgaigd 60 
                 + + ++p+ + +l+d++ +vR+aaa+ ++ai +
  CCE31053.1 590 DVQALVPYAITALSDPSKRVRQAAAHLIAAITE 622
                 3347799999999***********999998864 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
      HEAT_2  27 ignpealpaLvelle 41 
                   +pe+l+aL+ +l+
  CCE31053.1 942 VSHPELLDALFAALS 956
                 467899999999985 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.72
      HEAT_2    3 aLlqalendpdpevrraairaLgrign 29  
                  +L++ ++++++p v+ aa+   +++++
  CCE31053.1 1004 LLVNCIQKSSSPVVQNAALLLVANLAT 1030
                  566677777777777777766666555 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 2.9
      HEAT_2   14 pevrraairaLg....rignpealpaLvellededp 45  
                  ++v + a+r+L      ++n++++  + +l++ ed+
  CCE31053.1 1194 KDVEKVALRQLSalssFLANKKLRSQISKLVDLEDM 1229
                  445555555555444334566666666666544443 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.059
      HEAT_2    5 lqalendpdpevrraairaLg.....rignp...........ealpaLvell.ededpavRraaaeaLgai 58  
                   ++l + pd  +r++++raL      +               + lp L+ ++ e++d +  ++a++   +i
  CCE31053.1 1283 ENLL-DRPDLGLRQKVLRALEvrvetE---SntdstsrnallSFLPQLTAAIrESKDIRYKHTAVTCVDKI 1349
                  3333.5666667777777777644431...02223233333333666666665556666666666666655 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 0.64
      HEAT_2    2 daLlqalendpdpevrraairaLgrignp..........ea.lpaLve.llededpavRraaaeaLg 56  
                  ++L +a+++++d   +++a+ +  +i+++           a   +  + +l  ed + R +a   L 
  CCE31053.1 1324 PQLTAAIRESKDIRYKHTAVTCVDKIAEKygkkdveavvAAgETIAGPhCLGQEDQRLRVMALLCLT 1390
                  5566666666666666666666665555433333322221111111112345555566666655555 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 1.1
      HEAT_2   61 pealpaLkellddddddv 78  
                   ++l++L++++++d+dd+
  CCE31053.1 1662 ARVLQVLAACFTHDQDDF 1679
                  468999*****9999986 PP

  == domain 8  score: 13.0 bits;  conditional E-value: 3.4e-05
      HEAT_2   23 aLgrignpealpaLvellededpavRraaaeaLgai....g......dpealpaLkellddddddvvRe 81  
                  a  + + +e+ ++L++ll++e++ vR aa++   ++    g      ++e lp   e l++ddd+vv +
  CCE31053.1 1720 ADSQAHQKEINATLLKLLKSEHAPVRLAAVKCQQELtdslGeewlsmLHEMLPRISE-LQEDDDEVVER 1787
                  3336777899********************977766322323333335889999999.56777777766 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.5   0.00014      0.43      26      55 .]     591     620 ..     567     620 .. 0.77
   2 ?   -0.7   0.1      0.76   2.3e+03       3      33 ..    1017    1047 ..    1015    1067 .. 0.73
   3 ?   -2.2   0.0       2.1   6.4e+03      23      37 ..    1064    1078 ..    1048    1089 .. 0.79
   4 ?    0.9   0.1      0.24   7.1e+02      26      53 ..    1275    1302 ..    1264    1303 .. 0.83
   5 ?    3.5   0.2     0.036   1.1e+02       2      44 ..    1380    1424 ..    1379    1436 .. 0.67
   6 ?   -1.8   0.0       1.6   4.9e+03       7      30 ..    1431    1455 ..    1425    1456 .. 0.80
   7 !    7.9   0.3    0.0015       4.3      21      50 ..    1721    1750 ..    1712    1751 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
     HEAT_EZ  26 vpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 v++++p+ + +L+d+s++VR+aAa+ ++++
  CCE31053.1 591 VQALVPYAITALSDPSKRVRQAAAHLIAAI 620
                 66788888888889999********99875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.76
     HEAT_EZ    3 vRraAawaLGrlaggepellqplvpeilpaL 33  
                  v++aA++ +++la  +p+l+   v  i  ++
  CCE31053.1 1017 VQNAALLLVANLATTAPNLVLHSVMPIFTFM 1047
                  8999999**9988777777655555555554 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.1
     HEAT_EZ   23 qplvpeilpaLlalL 37  
                  ++ ++e++p+L+  L
  CCE31053.1 1064 AQTIKEVIPPLIGSL 1078
                  567889999999766 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.24
     HEAT_EZ   26 vpeilpaLlalLnddsdeV..RaaAagaLg 53  
                  ++e ++a  +lL  d ++   R+++++aL+
  CCE31053.1 1275 ISEFIKAVENLL--DRPDLglRQKVLRALE 1302
                  778999999999..7777777*******97 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.036
     HEAT_EZ    2 rvRraAawaLGrlaggepellqp....lvpeilpaLlalLnddsdeV 44  
                  r+R  A+++L +l  +  +++ p    ++p+++ +L   L  d deV
  CCE31053.1 1380 RLRVMALLCLTSLVDVLQDAVVPilpvAIPQAITYLQGSL--DGDEV 1424
                  8999999999885544445544423338888888888888..77777 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 1.6
     HEAT_EZ    7 Aaw.aLGrlaggepellqplvpeil 30  
                  A+   +++la++ p  l+++v++il
  CCE31053.1 1431 ACYgFISSLAEHLPYMLSTHVDKIL 1455
                  5553678899************998 PP

  == domain 7  score: 7.9 bits;  conditional E-value: 0.0015
     HEAT_EZ   21 llqplvpeilpaLlalLnddsdeVRaaAag 50  
                  + q +++ei + Ll+lL++++++VR aA+ 
  CCE31053.1 1721 DSQAHQKEINATLLKLLKSEHAPVRLAAVK 1750
                  6678999999******************95 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.13   3.9e+02      16      73 ..     570     626 ..     566     651 .. 0.86
   2 ?   -0.2   0.1      0.38   1.1e+03      48      79 ..    1373    1404 ..    1280    1407 .. 0.64
   3 ?    9.0   0.1   0.00052       1.6      28      84 ..    1718    1779 ..    1692    1807 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.13
     RTP1_C1  16 rahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpe 73 
                 r  +l++ ++ +++++ ea +d+++++   ++aL+d+ + v  +a ++++a+++ ++ 
  CCE31053.1 570 RMAALNMVKQRLQSRD-EANVDVQALVPYAITALSDPSKRVRQAAAHLIAAITELYSL 626
                 78899999999*9999.9999***************9999999999999988887765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.38
     RTP1_C1   48 aLkdedsYvYLnaikgLvaLadvfpeevlklL 79  
                  +L +ed+ + ++a  +L++L+dv ++ v+++L
  CCE31053.1 1373 CLGQEDQRLRVMALLCLTSLVDVLQDAVVPIL 1404
                  44455555555666677777777777777765 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00052
     RTP1_C1   28 ekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey.......e 84  
                   + +  +++++++i  +ll+ Lk e   v L+a+k+  +L+d   ee l++L e         e
  CCE31053.1 1718 AAAD--SQAHQKEINATLLKLLKSEHAPVRLAAVKCQQELTDSLGEEWLSMLHEMLpriselqE 1779
                  4444..788999****************************************999855544330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.45
# Mc/sec: 12140.07
//
Query:       CCE31054.1  [L=263]
Description: uncharacterized protein CPUR_04905 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-21   77.3   0.0    3.1e-21   76.6   0.0    1.4  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    1.1e-11   45.1   0.0    1.9e-11   44.3   0.0    1.4  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase
  ------ inclusion threshold ------
      0.068   12.6   0.0       0.12   11.9   0.0    1.3  1  DUF2938        Protein of unknown function (DUF2938)


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   5.2e-25   3.1e-21       1     178 [.      10     225 ..      10     226 .. 0.75

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 5.2e-25
                    EEESHHHHTCTTB.CCHCHHCCCCCCCHHHTT..-EEEEE.EEHCCH-H....HHHHHHHHCTGGG-T..SEEEEE--CCC.......CCTT--HH CS
  Lipase_GDSL_2   1 alGDSiTaGygad.gggrsypaylarllaarl..gldvvnnlgvsGatt..allrllerlrdllrlkp..dlvtiliGtND.......lgrgvpaa 82 
                    ++GDS+++ +    +g        ++ l++r+  +ldvvn +g+sG++t  a   l+e ++++++  p  +++++l+G+ND       + ++vp +
     CCE31054.1  10 LFGDSLMQQSVNLqNGFSL-----QADLQSRFirRLDVVN-RGFSGWNTanAMKYLPEIFPEPTPSGPklRYLVLLFGANDaalplptASQHVPID 99 
                    59******64322133333.....5555555554449999.********87667777777788888888899*********888888777788888 PP

                    HHHHH..HHHHHH..HHCCC...GEEE..........CEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHH.CT-EEE-HHHHHHHCCCCCGGBB CS
  Lipase_GDSL_2  83 aaaandnleelid..alraaapgaril..........vlgplpptpeaaadarelnaviaaynealrevaae.egvpfvDlhdaladsgerladll 165
                    ++++n  l+++i+  +++++  +a+il           l+ l++ +  a   r + a++aay+e +reva+e  gv+++Dl++a+ + + + + l+
     CCE31054.1 100 QYKEN--LTKIIThpHIKQH--NAKILlvtpppvdeiKLAKLNVAEGHASALR-RSATTAAYSEKAREVAREnPGVVLIDLWKAVMNKAIDMTPLD 190
                    87777..******8889998..9999977888888764444444444333333.379************************888888876666655 PP

                    TTS.......................SSB-HHHHH CS
  Lipase_GDSL_2 166 addg......................lHPnaaGyr 178
                    ++ g                      lH++++ yr
     CCE31054.1 191 YTPGgpwlgspengqqggldsllpdgLHMSGDAYR 225
                    55555888888888888888888888999999998 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   3.2e-15   1.9e-11       1     196 [.       8     227 ..       8     231 .. 0.71

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 3.2e-15
                  EEEEESHHHH.......TTTHHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCHECTTTECHHHHHCTTS..EEEEE--CTCC-EECSSC CS
                  xxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   1 ivafGDSltd.......Gdgaatlntiqlktpknlnefdlaldrianignkgasdnelqqllnkyplkseqlkalhpd..lviislGtNDsnlgkkst 89 
                  +v+fGDSl++       G++      ++++++ ++             g++ a+ ++    +      +       p+  ++++ +G+ND     ++t
   CCE31054.1   8 LVLFGDSLMQqsvnlqnGFSLQADLQSRFIRRLDVVN-------RGFSGWNTANAMKYLPEI------FPEPTPSGPKlrYLVLLFGANDA-ALPLPT 91 
                  589*****99888888888666666666666665532.......222333333333333333......322233344556***********.9999** PP

                  TTTCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCH.......CTCCCCHCCHHHHHHHHHHHHHHHHHHHH.HCTEEEECHHHHHHHTHCCG CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  90 daakkeaeeyiknlreaikelkeegapkaivvlvsppglgp.......qeekdakklgekgnefvgeynqrlndlae.kdgfavvDlydelqglsgie 179
                    ++ ++++y++nl++ i + +  + ++a+++lv+pp++ +         e  a  l  + +   + y+++ +++a+ + g++++Dl++    ++   
   CCE31054.1  92 ASQHVPIDQYKENLTKIITHPH-IKQHNAKILLVTPPPVDEiklaklnVAEGHASAL--RRSATTAAYSEKAREVAReNPGVVLIDLWKAVMNKAIDM 186
                  *******************766.45689*************9996654222222222..22344567899999999999************9993333 PP

                  CHCH...........................TSSSB-HHHHHHH CS
                  xxxx...........................xxxxxxxxxxxxx RF
  Lipase_GDSL 180 qlka...........................DglHpsekgyekl 196
                                                 DglH s  +y+  
   CCE31054.1 187 ---TpldytpggpwlgspengqqggldsllpDGLHMSGDAYRVF 227
                  ...1345777788888888888888999999*********9865 PP

>> DUF2938  Protein of unknown function (DUF2938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     2e-05      0.12       8      42 ..     170     204 ..     167     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2e-05
     DUF2938   8 tlvlDlwalllkrllgvpalnyalvGRWllhlakg 42 
                  +++Dlw+ ++++++ ++ l+y+  G Wl+  ++g
  CCE31054.1 170 VVLIDLWKAVMNKAIDMTPLDYTPGGPWLGSPENG 204
                 689*************************9876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1986.69
//
Query:       CCE31055.1  [L=660]
Description: uncharacterized protein CPUR_04906 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.20s 00:00:00.76 Elapsed: 00:00:00.36
# Mc/sec: 5424.83
//
Query:       CCE31056.1  [L=182]
Description: uncharacterized protein CPUR_04907 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-21   77.6   0.0    1.6e-21   77.2   0.0    1.2  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0   9.1e-26   1.6e-21       8     173 ..       1     139 [.       1     141 [. 0.93

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 9.1e-26
  Isochorismatase   8 mqndfveegvkeseeisavveninkllkaarkagipviftrdvheleevkgdlderkaaphfkpgttgaelvpelaplegdvvvdKtrfsafag 101
                      mq++f     k+++e++ +v  + kll+ a+++ ip+ +t+++ +                 k g+t a+l p l+       +dKt+fs+   
       CCE31056.1   1 MQDKFR----KAIHEFDSIVTTTTKLLTFAQALHIPIHATTQTSS-----------------KLGPTVAALAPFLP----ATPLDKTKFSML-I 68 
                      899999....***********************************.................*********99999....579*********.9 PP

  Isochorismatase 102 tdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlk.qafatvitt 173
                      ++l  +L+   + ++ l+Gi+ ++C+ +ta+d++d G+ ++v++DAv+++++ +++ al+rl+ + +++v+++
       CCE31056.1  69 PQLASQLAP--RSRVALVGIESHICITQTALDLRDAGHVPYVIADAVSSCNASEVRIALDRLRrEEGVVVTSS 139
                      99***9955..99**************************************************5555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1600.59
//
Query:       CCE31057.1  [L=4991]
Description: related to midasin (AAA ATPase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.5e-122  403.3   0.0    1.9e-21   76.5   0.0    9.9  9  AAA_5            AAA domain (dynein-related subfamily)
    5.5e-53  177.6   8.1    9.2e-23   80.5   0.1    5.8  5  AAA_lid_7        Midasin AAA lid domain
    1.4e-31  108.7   0.6    1.3e-30  105.6   0.1    2.9  2  AAA_lid_5        Midasin AAA lid domain
    1.3e-29  103.0   0.8    1.9e-06   27.5   0.1    7.0  6  AAA_7            P-loop containing dynein motor region
    5.1e-29  100.8   0.0    1.4e-09   37.9   0.0    6.8  6  AAA_3            ATPase family associated with various cellul
    3.6e-28   99.1  12.1    8.8e-07   29.5   0.2    9.6  6  AAA_16           AAA ATPase domain
    6.3e-25   88.1   0.0    0.00031   21.2   0.0    7.1  6  AAA              ATPase family associated with various cellul
    1.5e-24   86.4   0.0     0.0077   16.3   0.0    8.4  7  Dynein_heavy     Dynein heavy chain region D6 P-loop domain
      3e-20   72.9   0.1     0.0011   19.2   0.0    7.6  6  AAA_22           AAA domain
    3.9e-19   69.0   0.0     0.0041   16.9   0.0    6.0  5  Sigma54_activat  Sigma-54 interaction domain
    2.7e-18   66.0   0.0      0.007   15.4   0.0    7.5  7  AAA_6            Hydrolytic ATP binding site of dynein motor 
    9.8e-17   61.4   1.0      0.017   15.0   0.2    6.4  6  RsgA_GTPase      RsgA GTPase
    2.7e-16   59.7   2.5      0.013   15.5   0.0    5.6  5  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    1.5e-15   57.9   0.1       0.03   14.9   0.0    7.8  6  AAA_18           AAA domain
    1.9e-15   57.0   0.0      0.025   14.6   0.0    7.1  6  AAA_14           AAA domain
    9.9e-15   54.8   1.0      0.061   13.2   0.0    5.5  4  NACHT            NACHT domain
    1.3e-14   54.6   0.4       0.18   11.9   0.0    6.3  5  AAA_33           AAA domain
    9.9e-14   51.6   0.2     0.0079   16.3   0.0    6.5  6  Sigma54_activ_2  Sigma-54 interaction domain
    2.6e-13   50.3   0.3       0.11   12.9   0.0    6.8  6  RNA_helicase     RNA helicase
      4e-13   49.0   0.3       0.04   13.0   0.0    5.8  5  T2SSE            Type II/IV secretion system protein
    1.1e-11   45.3   8.5     0.0018   18.8   0.0    7.8  6  ABC_tran         ABC transporter
    2.7e-11   43.5   1.2       0.03   14.1   0.0    6.4  6  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.4e-09   38.0   3.6        0.9    9.4   0.0    5.9  5  NTPase_1         NTPase
    3.4e-09   36.4   0.6        1.5    8.2   0.0    7.2  7  Mg_chelatase     Magnesium chelatase, subunit ChlI
    1.1e-08   35.0   0.1       0.35   10.6   0.0    5.9  5  IstB_IS21        IstB-like ATP binding protein
    1.6e-08   34.3   0.2       0.84    9.2   0.0    5.6  5  AAA_25           AAA domain
    4.7e-08   33.2   0.0       0.16   11.9   0.0    5.6  5  Rad17            Rad17 P-loop domain
    1.7e-07   30.8   0.0        7.3    6.4   0.0    6.4  6  AAA_29           P-loop containing region of AAA domain
      2e-07   30.5   0.7       0.47    9.6   0.0    5.1  5  DUF815           Protein of unknown function (DUF815)
    2.1e-07   30.8   4.1       0.41   10.3   0.0    5.3  4  SRP54            SRP54-type protein, GTPase domain
    7.3e-07   29.3   2.8       0.39   10.7   0.0    5.8  5  ResIII           Type III restriction enzyme, res subunit
      1e-06   28.6   1.1       0.43   10.3   0.0    4.8  4  PduV-EutP        Ethanolamine utilisation - propanediol utili
    1.2e-06   28.9   5.7        1.8    8.9   0.0    6.1  4  AAA_19           AAA domain
    2.1e-06   27.2   9.0       0.41    9.9   0.0    6.5  5  Zeta_toxin       Zeta toxin
    8.5e-06   25.8   1.5        6.6    6.5   0.0    5.4  5  dNK              Deoxynucleoside kinase
    1.3e-05   25.3   0.6         30    4.7   0.0    6.1  5  MMR_HSR1         50S ribosome-binding GTPase
    1.3e-05   25.4   0.6        5.2    7.3   0.0    5.4  5  Roc              Ras of Complex, Roc, domain of DAPkinase
    1.4e-05   24.4   0.3        2.1    7.5   0.0    4.7  4  NB-ARC           NB-ARC domain
    1.7e-05   24.3   0.2        2.6    7.4   0.0    5.0  5  TniB             Bacterial TniB protein
    2.7e-05   24.1   6.1        5.3    6.8   0.0    5.5  5  ATP_bind_1       Conserved hypothetical ATP binding protein
    2.8e-05   23.9   2.6          7    6.3   0.3    6.1  5  AAA_24           AAA domain
    6.8e-05   22.9   0.2          8    6.5   0.0    5.6  5  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
    0.00021   21.1   0.4       0.82    9.3   0.0    5.1  3  Thymidylate_kin  Thymidylate kinase
    0.00036   20.8  15.9       0.59   10.4   0.0    7.1  6  AAA_28           AAA domain
    0.00087   19.9   0.2     0.0058   17.3   0.1    2.6  1  VWA_2            von Willebrand factor type A domain
     0.0017   18.1   0.0         42    3.8   0.0    5.0  5  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0019   17.5   0.0        2.6    7.2   0.0    5.0  5  KAP_NTPase       KAP family P-loop domain
     0.0035   16.4   0.3        1.8    7.5   0.0    3.8  4  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0058   16.2   3.2         32    4.0   0.1    5.5  6  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0058   16.4   0.0        8.6    6.1   0.0    3.7  3  DEAD             DEAD/DEAH box helicase
     0.0059   16.0   0.0         28    4.0   0.0    4.3  4  ATPase           KaiC
     0.0066   15.7   0.4        1.9    7.6   0.0    3.7  4  TIP49            TIP49 P-loop domain
     0.0089   15.5   0.5        9.3    5.6   0.0    4.2  4  PhoH             PhoH-like protein
     0.0093   16.3   0.0       0.35   11.2   0.0    3.5  2  GAF_2            GAF domain
  ------ inclusion threshold ------
      0.026   14.6   0.6         18    5.3   0.0    4.8  2  DUF87            Helicase HerA, central domain
      0.053   13.4   0.0         18    5.2   0.0    3.4  3  Ploopntkinase3   P-loop Nucleotide Kinase3
       0.11   12.5   3.5         30    4.5   0.0    4.6  5  MobB             Molybdopterin guanine dinucleotide synthesis


Domain annotation for each model (and alignments):
>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   1.9e-22   5.9e-20       2     129 ..     307     435 ..     306     444 .. 0.91
   2 !   23.5   0.0   1.4e-07   4.4e-05       1      47 [.     640     686 ..     640     703 .. 0.91
   3 !   24.1   0.0   9.3e-08   2.9e-05      52     138 .]     812     900 ..     797     900 .. 0.79
   4 !   76.5   0.0   5.9e-24   1.9e-21       1     138 []    1090    1226 ..    1090    1226 .. 0.93
   5 !   36.5   0.0   1.4e-11   4.4e-09       1      47 [.    1382    1428 ..    1382    1454 .. 0.88
   6 !   52.1   0.0   2.1e-16   6.6e-14      50     138 .]    1493    1581 ..    1471    1581 .. 0.85
   7 !   65.6   0.0   1.4e-20   4.3e-18       2     138 .]    1763    1901 ..    1762    1901 .. 0.92
   8 !   10.4   0.0    0.0015      0.48       3      47 ..    2074    2118 ..    2072    2131 .. 0.89
   9 !   28.6   0.0   3.8e-09   1.2e-06      41     122 ..    2200    2283 ..    2196    2293 .. 0.86

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 1.9e-22
                 EEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE. CS
       AAA_5   2 vlLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlll 96 
                 +lL G  G+gK++++ +la  l   + +++  l+++t ++ l+g ++++  +g  ++++++l++a+reg+ +++++++ra++evl++Ll+l+e+++ll+
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLgkYSDMVTLHLNEQTDAKMLIGLYSTDskPGSFQWRPGVLTTAVREGRWVLIEDLDRAPTEVLSTLLPLIERKELLI 405
                 89********************877778888899*************9999************************************************ PP

                 .-SSSEEE---......-EEEEEESS--...-TT- CS
       AAA_5  97 eeggelvkaknddllerfrviatanpld..rslne 129
                 +++ge+++a++      fr++at  + +  +++++
  CCE31057.1 406 PSRGERIRAASS-----FRLFATVRTSRglNGREN 435
                 **********97.....*****9988886555554 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.4e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B-- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrrei 47 
                 +vlLvG++G+gK++++++la  l+ ++  v+l+++ +  dl+g+ ++
  CCE31057.1 640 PVLLVGETGIGKTTVVQQLADSLRHKLIAVNLSQQSEVGDLLGGFKP 686
                 59****************************************99876 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 9.3e-08
                 .....--------G-SEEEEESGGG--HHHHHHHHHHH...HSSEEE..-SSSEEE---......-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5  52 tslvdsplvraaregeilvlDEveraesevlnsLlsll...eerrllleeggelvkaknddllerfrviatanpld.rslnelspalrsRf 138
                  s+v++ l +a+r+g+ ++lDE++ a++++l+s   ll    er   l + ++++ +    + ++fr+++++np+   ++ +l   +rsRf
  CCE31057.1 812 FSFVEGNLIKAVRNGDWVLLDEINLASPDTLESIADLLtgpQERPSILLSETGEIEKIV--AHPDFRIFGAMNPATdIGKRDLPIGIRSRF 900
                 689******************************99999444355555555555553322..3344**********9877778888888887 PP

  == domain 4  score: 76.5 bits;  conditional E-value: 5.9e-24
                  EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE. CS
       AAA_5    1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlll 96  
                  +vl++Gp+  gK++++e+la +++++++ +++++ t  ++ +g +    +g+ +++++ lv+a+r+g+ +vlDE++ a+++vl++L++ll+++r ll
  CCE31057.1 1090 PVLIQGPTSAGKTSMIEYLANFTGNKFVRINNHEHTDLQEYLGTYVSGpDGKLRFQEGLLVQAMRQGHWIVLDELNLAPTDVLEALNRLLDDNRELL 1186
                  599*******************************************88******************************************9877666 PP

                  .-SSSEEE---......-EEEEEESS--...-TT-TTHHHHTT- CS
       AAA_5   97 eeggelvkaknddllerfrviatanpld..rslnelspalrsRf 138 
                   + +++v  + ++    f ++at np+   ++++ ls a+r Rf
  CCE31057.1 1187 IPETQEVVRPHEN----FILFATQNPPGlyGGRKVLSRAFRNRF 1226
                  6666666555544....************9*************9 PP

  == domain 5  score: 36.5 bits;  conditional E-value: 1.4e-11
                  EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B-- CS
       AAA_5    1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrrei 47  
                  +vlLvG++G+gK+++++ la+al++e+++v+ +++t++ dl+g+ ++
  CCE31057.1 1382 PVLLVGETGCGKTTVVQLLAEALQQELHIVNAHQNTETGDLIGSQRP 1428
                  59****************************************98775 PP

  == domain 6  score: 52.1 bits;  conditional E-value: 2.1e-16
                  .......--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---.........-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5   50 gttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelvkaknddller...frviatanpld.rslnelspalrsRf 138 
                     +++d++lv+a+r g+ ++lDE+  a+++vl++L+s+le  r ll   +++ +   +        f+++at+np   ++++elspalr Rf
  CCE31057.1 1493 ALFEWSDGALVEAMRGGHFFLLDEISLADDSVLERLNSVLEPGRTLLLAEKGVDNS--FV--VGadgFQFFATMNPGGdFGKKELSPALRNRF 1581
                  4569******************************************8888877743..22..22345*************************9 PP

  == domain 7  score: 65.6 bits;  conditional E-value: 1.4e-20
                  EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.............--------G-SEEEEESGGG--HHHHHHHHHHHHSS.E CS
       AAA_5    2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik....ngttslvdsplvraaregeilvlDEveraesevlnsLlslleer.r 93  
                  +lL G pG+gK++l+  l++a +r+++ ++l+++t   dl+g   +      g+ +++d p+ +a+++ge ++lDE + a+++vl+ L+  l++r +
  CCE31057.1 1763 ILLEGSPGVGKTTLVAALSQACGRPLTRINLSDQTDLMDLFGTDVPVegeeAGNFAWRDAPFLQAMQKGEWVLLDEMNLASQSVLEGLNACLDHRgE 1859
                  89***************************************9755546889******************************************9956 PP

                  EE..-SSSEEE---......-EEEEEESS--...-TT-TTHHHHTT- CS
       AAA_5   94 llleeggelvkaknddllerfrviatanpld..rslnelspalrsRf 138 
                  +++ e++++ k  +d     fr++a+ np +  ++++ l ++++ Rf
  CCE31057.1 1860 VYISELDQVFKRHPD-----FRLFAAQNPHHqgGGRKGLPASFVNRF 1901
                  777777777777776.....***********9999999999999998 PP

  == domain 8  score: 10.4 bits;  conditional E-value: 0.0015
                  EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B-- CS
       AAA_5    3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrrei 47  
                  +L  p+G gKs+l  ++aa+ ++++ +  +++d+ + dl+g+ e 
  CCE31057.1 2074 ILSSPSGYGKSSLLNYVAALSGKPLAVFPMNADIDTMDLVGGFEQ 2118
                  56669************************************9984 PP

  == domain 9  score: 28.6 bits;  conditional E-value: 3.8e-09
                  HH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---..........-EEEEEESS CS
       AAA_5   41 lkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelvkaknddller....frviatanp 122 
                  l g+++++n + ++ d+++v+a  +g+ lvlD  ++++ +vl++L+slle + +l  + +   + k+   + r    fr++ t+ p
  CCE31057.1 2200 LEGPLHLDNPRFEWLDGVIVKALVTGQWLVLDNANMCNASVLDRLNSLLEPNGFLSINEHCDSDGKPR--MIRphpdFRIFLTMDP 2283
                  678999999*********************************************96666666666663..3334689999999987 PP

>> AAA_lid_7  Midasin AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.1   2.9e-25   9.2e-23       1     106 []     457     572 ..     457     572 .. 0.95
   2 ?   -0.7   0.0       5.2   1.6e+03      13      57 ..     930     976 ..     914     996 .. 0.77
   3 !   39.8   1.9   1.3e-12   4.1e-10       1     105 [.    1238    1332 ..    1238    1333 .. 0.96
   4 ?    0.5   0.0       2.2   7.1e+02       1      59 [.    1594    1648 ..    1594    1675 .. 0.82
   5 !   54.5   0.1   3.6e-17   1.1e-14       1     104 [.    1913    2013 ..    1913    2015 .. 0.90

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 2.9e-25
   AAA_lid_7   1 eLeeilqskfpllasvadklievyeelrseqsssrsfs....gspreislRDLlkWcrRlsalldrsg......flspsvreeifleavdvFaaslstq 89 
                 eLee++ + +p+l+++++++++v+++l++++++ + +s       r+++lRDLlkWcrRl++ l ++g      ++s+++r+ +f+ea+d+F++s+++ 
  CCE31057.1 457 ELEEVILQTYPMLRKFVPTILAVHNRLSQLSRNATLMSrgrsVMDRQVNLRDLLKWCRRLKECLLTAGstngdePISETTRDWMFMEALDCFVGSCPDI 555
                 8*********************************887666668889*****************999999****************************** PP

   AAA_lid_7  90 edrlrvaeviaehlgls 106
                 e  +++  +iae++++s
  CCE31057.1 556 ELGKHLTYAIAEEMHMS 572
                 **************986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 5.2
   AAA_lid_7  13 lasvadklievyeelrseqsssrsfs..gspreislRDLlkWcrRls 57 
                 + ++ad + ++y + +++ +++r ++   +   +slR L + ++ ++
  CCE31057.1 930 HDQAADDVARLYMNTKRMAQEKRLVDgaNEVPHFSLRTLTRVLSYVT 976
                 445999999**********99999876677889******99887665 PP

  == domain 3  score: 39.8 bits;  conditional E-value: 1.3e-12
   AAA_lid_7    1 eLeeilqskf.pllasvadklievyeelrseqsssrsfsgspreislRDLlkWcrRlsalldrsgflspsvreeifleavdvFaaslstqedrlrva 96  
                  eLe ilq++    + + ++++++vy+el++++++sr f  +    +lRDL++W+ R + +           reei+ ++++++a++++ +e+r +v 
  CCE31057.1 1238 ELEYILQQRSrTTSPPDCRRIVTVYKELSRLRQTSRLFEQKDSFATLRDLFRWALREADT-----------REEIAAHGFMLLAERVRVEEERIAVK 1323
                  899*******88999***************************************998776...........************************** PP

   AAA_lid_7   97 eviaehlgl 105 
                   vi++++ +
  CCE31057.1 1324 DVIEKVFRV 1332
                  *****9986 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 2.2
   AAA_lid_7    1 eLeeilqskf.pllasvadklievyeelrseqsssrsfsgspreislRDLlkWcrRlsal 59  
                  ++ ei+++k  + ++ ++d+++++ +   +  +       +   +s+R++l W + +++ 
  CCE31057.1 1594 DIYEIVKTKLsNQSKYLVDAMVDFARWFAQTFRPL-----ATTAFSIREILVWVQFINTF 1648
                  77899999998899999999999988887777666.....89999999999999988764 PP

  == domain 5  score: 54.5 bits;  conditional E-value: 3.6e-17
   AAA_lid_7    1 eLeeilqskf.pllasvadklievyeelrseqsssrsfs..gspreislRDLlkWcrRlsalldrsgflspsvreeifleavdvF.aaslstqedrl 93  
                  +L+ i ++ f +l + v+++li+++++l+++   +r+f+  g p+e++lRD+l+W+++l+++        p+++   +++++d++  ++++t  dr+
  CCE31057.1 1913 DLALIASHNFpRLDSGVIAHLINFVSQLEHQIVVERVFGgqGGPWEFNLRDVLRWLHLLNSS-------DPVLQRAQMDDFLDIIvRQRFRTTRDRE 2002
                  899*******558888**********************999********************9.......6788888888888877256********* PP

   AAA_lid_7   94 rvaeviaehlg 104 
                  +v e++a++ g
  CCE31057.1 2003 EVTELFARVVG 2013
                  ******99865 PP

>> AAA_lid_5  Midasin AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.1   4.1e-33   1.3e-30       1     105 [.     914    1018 ..     914    1019 .. 0.98
   2 ?   -0.9   0.0       5.3   1.7e+03      16      57 ..    1250    1289 ..    1240    1305 .. 0.73

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 4.1e-33
   AAA_lid_5    1 DLellvknyLkevsltdqalvtdvvefYlelkklaerkeltdgagqkphfSlRtlsraLsyartilklaglrralyeGfsmsFltqLdsesrkkvek 97  
                  DL +++k+yL ++s+++++  +dv+++Y++ k++a++k+l+dga++ phfSlRtl+r+Lsy+ ti++l+++rralyeGfsm Flt Ld++s+k++  
  CCE31057.1  914 DLLTIIKTYLGNTSTKHDQAADDVARLYMNTKRMAQEKRLVDGANEVPHFSLRTLTRVLSYVTTIAPLYSIRRALYEGFSMGFLTLLDRDSEKALLP 1010
                  99*********************************************************************************************** PP

   AAA_lid_5   98 lirkillk 105 
                  li ++ll 
  CCE31057.1 1011 LIYHHLLD 1018
                  **999875 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 5.3
   AAA_lid_5   16 tdqalvtdvvefYlelkklaerkeltdgagqkphfSlRtlsr 57  
                  t+   ++++v++Y el +l + ++l + +      +lR l r
  CCE31057.1 1250 TSPPDCRRIVTVYKELSRLRQTSRLFEQK--DSFATLRDLFR 1289
                  44467999*************99999844..44445666655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1     8e-07   0.00025      12      78 ..     283     348 ..     278     354 .. 0.93
   2 !   23.5   0.0     1e-07   3.2e-05      21      73 ..     626     675 ..     610     681 .. 0.79
   3 !    8.2   0.0    0.0053       1.7      25      57 ..    1080    1112 ..    1063    1131 .. 0.79
   4 !   27.5   0.1   6.1e-09   1.9e-06       7      64 ..    1354    1411 ..    1348    1421 .. 0.84
   5 !   11.3   0.0   0.00057      0.18      28      78 ..    1755    1802 ..    1742    1909 .. 0.70
   6 ?    1.7   0.0      0.49   1.6e+02      28      52 ..    2065    2089 ..    2046    2109 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 8e-07
       AAA_7  12 ilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanql 78 
                  lV t  t+ +   l +ll+ + p+ll G +G+GKt+ +++l  +l  +   ++t+ ++ qt+a++l
  CCE31057.1 283 SLVMTKTTTGNMERLATLLRDDDPILLHGMAGVGKTSFVHELAMQLG-KYSDMVTLHLNEQTDAKML 348
                 5899999999999*********************************9.888999*********9987 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1e-07
       AAA_7  21 rysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqt 73 
                 r+   +   +k++ pvllvG+tG GKt+++++l ++l    ++ + +n+s+q 
  CCE31057.1 626 RLLEQIAVAIKHEEPVLLVGETGIGKTTVVQQLADSLR---HKLIAVNLSQQS 675
                 4445566789***************************9...666677777765 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0053
       AAA_7   25 llelllknkkpvllvGptGtGKtviikdllkkl 57  
                  l++   +++ pvl+ Gpt  GKt++i+ l +  
  CCE31057.1 1080 LVRATSTRRFPVLIQGPTSAGKTSMIEYLANFT 1112
                  677788999****************98655443 PP

  == domain 4  score: 27.5 bits;  conditional E-value: 6.1e-09
       AAA_7    7 akfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekyls 64  
                  a+  + +V t    r+ +l++  lkn+ pvllvG+tG+GKt++++ l ++l++e +++
  CCE31057.1 1354 ASNAQGVVWTHAMRRLYVLVSRALKNNEPVLLVGETGCGKTTVVQLLAEALQQELHIV 1411
                  5566778999999************************************999655444 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.00057
       AAA_7   28 lllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanql 78  
                    l+ +kp+ll G+ G+GKt+++  l +++       + in+s qt+ ++l
  CCE31057.1 1755 RALQMQKPILLEGSPGVGKTTLVAALSQACG---RPLTRINLSDQTDLMDL 1802
                  57899*******************9999888...56677888888877665 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.49
       AAA_7   28 lllknkkpvllvGptGtGKtviikd 52  
                   ++k++ p++l  p+G GK+++++ 
  CCE31057.1 2065 VCVKQNIPCILSSPSGYGKSSLLNY 2089
                  689******************9875 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.9e-05     0.012       2     109 ..     307     423 ..     306     444 .. 0.80
   2 ?    6.0   0.0     0.032        10       2      43 ..     641     682 ..     640     695 .. 0.86
   3 ?    1.9   0.0       0.6   1.9e+02      64     129 ..     827     900 ..     807     901 .. 0.68
   4 !   22.2   0.0   3.2e-07    0.0001       2     130 ..    1091    1227 ..    1090    1228 .. 0.80
   5 ?    7.6   0.0      0.01       3.3       2      45 ..    1383    1426 ..    1382    1439 .. 0.91
   6 !   37.9   0.0   4.6e-12   1.4e-09       2     130 ..    1763    1902 ..    1762    1903 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.9e-05
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri..qftpdllPsdilGtevfeekekefefkkGpvfanl.....lladeinrappktqsalleameerqvtv 93 
                 +ll+g+ G++kt +v++la +l+   + +   +        ++G    ++k  +f+ ++G + + +     +l ++++rap+ + s+ll  +e +++ +
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLGKYSDMVtlHLNEQTDAKMLIGLYSTDSKPGSFQWRPGVLTTAVregrwVLIEDLDRAPTEVLSTLLPLIERKELLI 405
                 79********************976655511556666677899*****************999876666669******************999887665 PP

       AAA_3  94 ..egethklpepflvlat 109
                   +ge+ +  + f ++at
  CCE31057.1 406 psRGERIRAASSFRLFAT 423
                 115566666777888777 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.032
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilG 43 
                 vll g  G++kt++v++la++l  ++  + +      +d+lG
  CCE31057.1 641 VLLVGETGIGKTTVVQQLADSLRHKLIAVNLSQQSEVGDLLG 682
                 79999******************9998888877666666665 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.6
       AAA_3  64 nllladeinrappktq...salleameerqvtvegethklpe.....pflvlatqnPieqeGtyplpeaqldrf 129
                 + +l dein a+p t    + ll   +er   + +et ++++      f ++ + nP    G   lp     rf
  CCE31057.1 827 DWVLLDEINLASPDTLesiADLLTGPQERPSILLSETGEIEKivahpDFRIFGAMNPATDIGKRDLPIGIRSRF 900
                 4599*********9862224577778898766666665555422222588999999999999999987777776 PP

  == domain 4  score: 22.2 bits;  conditional E-value: 3.2e-07
       AAA_3    2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanl.....lladeinrappktqsalleameerq... 90  
                  vl++g    +kt +++ la+  + +f ri         + lGt v    + +++f++G +++ +     ++ de+n ap+ +  al   +++++   
  CCE31057.1 1091 VLIQGPTSAGKTSMIEYLANFTGNKFVRINNHEHTDLQEYLGTYVSGP-DGKLRFQEGLLVQAMrqghwIVLDELNLAPTDVLEALNRLLDDNRell 1186
                  79999999**********************9998888999**988765.679******99876544444999**********999866666544111 PP

       AAA_3   91 vtvegethklpepflvlatqnPieqeGt.yplpeaqldrfl 130 
                  +  ++e  + +e+f+++atqnP    G    l  a  +rfl
  CCE31057.1 1187 IPETQEVVRPHENFILFATQNPPGLYGGrKVLSRAFRNRFL 1227
                  5555666666889********98876541567888888886 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.01
       AAA_3    2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGte 45  
                  vll g  G +kt++v+ la+al+ e++ +    +   +d++G++
  CCE31057.1 1383 VLLVGETGCGKTTVVQLLAEALQQELHIVNAHQNTETGDLIGSQ 1426
                  799999***********************999999999999976 PP

  == domain 6  score: 37.9 bits;  conditional E-value: 4.6e-12
       AAA_3    2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeeke..kefefkkGpvfanl.....lladeinrappktq...salleamee 88  
                  +lleg PG++kt+lv al++a +  ++ri +       d+ Gt+v  e e   +f  +  p ++ +     +l de+n a+  +     a l+   e
  CCE31057.1 1763 ILLEGSPGVGKTTLVAALSQACGRPLTRINLSDQTDLMDLFGTDVPVEGEeaGNFAWRDAPFLQAMqkgewVLLDEMNLASQSVLeglNACLDHRGE 1859
                  79*****************************9877778****998655443489*******99754444449********99886122566788888 PP

       AAA_3   89 rqvtvegethklpepflvlatqnPieqeGt.yplpeaqldrfl 130 
                    ++  ++ +k +  f ++a+qnP +q G    lp + ++rf+
  CCE31057.1 1860 VYISELDQVFKRHPDFRLFAAQNPHHQGGGrKGLPASFVNRFI 1902
                  89999999*****************99876156********98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   0.00014     0.045      12      50 ..     297     330 ..     292     352 .. 0.78
   2 !   21.0   1.3   1.1e-06   0.00036      14     165 ..     629     855 ..     619     860 .. 0.43
   3 !   10.3   0.2    0.0021      0.66      11      78 ..    1076    1140 ..    1073    1191 .. 0.65
   4 !   29.5   0.2   2.8e-09   8.8e-07       9     156 ..    1366    1529 ..    1363    1540 .. 0.68
   5 !   12.8   0.0   0.00036      0.11      24      50 ..    1759    1786 ..    1746    1831 .. 0.79
   6 ?    6.5   0.0     0.031       9.6      27      98 ..    2073    2129 ..    2056    2194 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 0.00014
      AAA_16  12 LlsalervrsgrpelvllsGesGvGKsslvrellralek 50 
                 L+++l+   ++    +ll+G++GvGK+s v el+ +l k
  CCE31057.1 297 LATLLR---DD--DPILLHGMAGVGKTSFVHELAMQLGK 330
                 555554...33..359****************9977765 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.1e-06
      AAA_16  14 salervrsgrpelvllsGesGvGKsslvrellralekd.................................................ggiflrgkcdql 63 
                 + +  v+   +e vll+Ge G+GK+++v++l+++l+ +                                                             
  CCE31057.1 629 EQIA-VAIKHEEPVLLVGETGIGKTTVVQQLADSLRHKliavnlsqqsevgdllggfkpvnvrslavplkeefedlfaatgisasknQ----------- 715
                 3343.33334489*********************999944444444443333333333333322222222222222221111111110........... PP

      AAA_16  64 esaipysalaqalareellrqlldeaesaeleawrekleeala........................................................ 106
                                                    + l    +                                                        
  CCE31057.1 716 -----------------------------------KYL----Eqagkcfaksqwsklsklwkeapkmfvkivaqletlqveqedttqdgseqpakrrkt 775
                 ...................................111....011123333333333333333333444444444444444443333333333333333 PP

      AAA_16 107 ..........................avpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrllesk 165
                                           +++  +ga a ++ e   +l++  ++++    ++lD++  a +++l+ +a Ll+ ++ +
  CCE31057.1 776 qsklqsllelrprwtnfaqrldqfdiQISGGSGAFAFSFVEG--NLIKAVRNGD---WVLLDEINLASPDTLESIADLLTGPQER 855
                 333334444444444444444444222222222222222222..4443334422...3666777777777777777777776665 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0021
      AAA_16   11 qLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalar 78  
                   Ll++++++++ r   vl+ G+   GK+s+++ l+  ++++   f+r ++++++   +y+  +++  + 
  CCE31057.1 1076 NLLNLVRATSTRRF-PVLIQGPTSAGKTSMIEYLA-NFTGN--KFVRINNHEHTDLQEYLGtYVSGPDG 1140
                  47788887877775.899*************9999.56666..37888777775556775556666655 PP

  == domain 4  score: 29.5 bits;  conditional E-value: 2.8e-09
      AAA_16    9 leqLlsalervrsgrpelvllsGesGvGKsslvrellralekd....ggiflrgkcdqlesaipy...salaqalareellrqlldeaesaeleawr 98  
                  +++L  +++r+ ++  e vll+Ge G+GK+++v+ l++al+++    +++  +++ d  +s++p     a+++al     l+ +l      +  a +
  CCE31057.1 1366 MRRLYVLVSRALKNN-EPVLLVGETGCGKTTVVQLLAEALQQElhivNAHQNTETGDLIGSQRPVrnrGAITEAL-S-ADLTTILGS----LGHAIP 1455
                  578888899999888.89*******************99999944433333444444447777776656699999.4.455555555....344566 PP

      AAA_16   99 ekleealaavpelagaeasrllellkrllallsrder................plvlvlDdlqwadeaslqlla 156 
                   +l+e la+ + l+ ++ + + + l++ ++  +++++                   ++lD++  ad++ l+ l 
  CCE31057.1 1456 PTLDEKLAQYKTLDVSIMNTIPQSLRDRIVANETRSKalfewsdgalveamrgGHFFLLDEISLADDSVLERLN 1529
                  66666666666666666677777777777666665666666666666666655568888888888887766655 PP

  == domain 5  score: 12.8 bits;  conditional E-value: 0.00036
      AAA_16   24 p.elvllsGesGvGKsslvrellralek 50  
                      +ll G +GvGK++lv +l +a  +
  CCE31057.1 1759 MqKPILLEGSPGVGKTTLVAALSQACGR 1786
                  33679****************9965554 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.031
      AAA_16   27 vllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawr 98  
                  ++ls +sG GKssl++ ++ al+++   ++  ++d  +++     l+  +++ + lr+         ++a+ 
  CCE31057.1 2073 CILSSPSGYGKSSLLNYVA-ALSGKPLAVFPMNADIDTMD-----LVGGFEQADPLRE---------VNAAL 2129
                  77999**************.67777544455544444222.....3333333333333.........33333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00086      0.27       1      35 [.     307     343 ..     307     402 .. 0.84
   2 !   14.8   0.0   9.5e-05      0.03       1      34 [.     641     674 ..     641     723 .. 0.87
   3 !   12.8   0.0   0.00039      0.12       1     110 [.    1091    1207 ..    1091    1228 .. 0.63
   4 !   16.9   0.0   2.1e-05    0.0065       1      35 [.    1383    1417 ..    1383    1446 .. 0.85
   5 !   21.2   0.0     1e-06   0.00031       1      38 [.    1763    1807 ..    1763    1882 .. 0.76
   6 ?    0.3   0.0       2.8   8.8e+02       2      25 ..    2074    2097 ..    2073    2124 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00086
                 EEEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCS CS
         AAA   1 vllyGppGtGKTllakavakelg..vefleisgsell 35 
                 +ll+G  G+GKT++++ +a +lg  ++++++ + e +
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLGkySDMVTLHLNEQT 343
                 69*******************9755667777766655 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 9.5e-05
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTC CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsel 34 
                 vll+G  G+GKT++++++a +l  +++ +++s+ 
  CCE31057.1 641 VLLVGETGIGKTTVVQQLADSLRHKLIAVNLSQQ 674
                 79***********************999998875 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.00039
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS......STTHHHHHHH...HHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsellsk......yvgesekkir...elfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88  
                  vl+ Gp   GKT++++ +a+ +g +f++i+ +e ++       yv+    k+r   +l+ +a +  + + +++DE+    +++          v+++
  CCE31057.1 1091 VLIQGPTSAGKTSMIEYLANFTGNKFVRINNHEHTDLqeylgtYVSGPDGKLRfqeGLLVQAMR--QGHWIVLDELNLA-PTD----------VLEA 1174
                  6899****************************99933566655444333333311123333333..3388888888655.444..........4555 PP

                  HHHHHHHTTTS...........SSTEEEEEEES CS
         AAA   89 Llteldgvkkk...........eskvivigatn 110 
                  L + ld+ ++            ++++i+ ++ n
  CCE31057.1 1175 LNRLLDDNRELlipetqevvrpHENFILFATQN 1207
                  555555555544444444444455555555554 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 2.1e-05
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsell 35  
                  vll+G  G+GKT++++ +a+ l++e+  +++++ +
  CCE31057.1 1383 VLLVGETGCGKTTVVQLLAEALQQELHIVNAHQNT 1417
                  79*********************999998888766 PP

  == domain 5  score: 21.2 bits;  conditional E-value: 1e-06
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.......S CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsellsk.......y 38  
                  +ll G pG+GKT+l+ a+ + +g+++ +i++s+ ++        +
  CCE31057.1 1763 ILLEGSPGVGKTTLVAALSQACGRPLTRINLSDQTDLmdlfgtdV 1807
                  699****************************99883345555551 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 2.8
                  EEESSTTSSHHHHHHHHHHHHTHE CS
         AAA    2 llyGppGtGKTllakavakelgve 25  
                  +l+ p G GK++l + va  +g +
  CCE31057.1 2074 ILSSPSGYGKSSLLNYVAALSGKP 2097
                  7899*************9987644 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0041       1.3      47      97 ..     367     427 ..     359     434 .. 0.84
   2 ?    0.7   0.0       1.7   5.3e+02       2      41 ..     637     676 ..     636     681 .. 0.87
   3 !   16.3   0.0   2.4e-05    0.0077      21     116 ..     790     908 ..     783     910 .. 0.74
   4 !   14.5   0.0   9.2e-05     0.029      34      96 ..    1135    1208 ..    1087    1221 .. 0.78
   5 ?    1.5   0.0      0.98   3.1e+02      47     100 ..    1501    1568 ..    1495    1579 .. 0.72
   6 !   14.8   0.0     7e-05     0.022      50     105 ..    1826    1898 ..    1820    1909 .. 0.76
   7 !   15.9   0.0   3.3e-05      0.01      46      98 ..    2216    2285 ..    2206    2297 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0041
                   HHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH................HHTT-EEEEEEES- CS
  Dynein_heavy  47 alekaakegsWvlLqNchla.pswlkeLekileel.........eeklhssfRlwltseps 97 
                   +l++a++eg+Wvl+++   a ++ l++L  ++e+          + ++ ssfRl+ t  +s
    CCE31057.1 367 VLTTAVREGRWVLIEDLDRApTEVLSTLLPLIERKellipsrgeRIRAASSFRLFATVRTS 427
                   6899****************677899999999866678888876555677*****998766 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.7
                   TTS-EEEEE-TT--THHHHHHHHHHTT--EEEEETTSHHH CS
  Dynein_heavy   2 pttPvlfilspgadptesleklakklkklvksvslGqgqe 41 
                   ++ Pvl++ ++g+  t+ +++la++l++ + +v l q++e
    CCE31057.1 637 HEEPVLLVGETGIGKTTVVQQLADSLRHKLIAVNLSQQSE 676
                   578*********************9988778888888766 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 2.4e-05
                   HHHHHHTT--EEEEETTSH..HHHHHHHHHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH........................HHTT-EEEEEEES- CS
  Dynein_heavy  21 eklakklkklvksvslGqg..qeeeaekalekaakegsWvlLqNchla.pswlkeLeki...........leel......eeklhssfRlwltseps 97 
                   +++a++l+++  ++s G+g    + +e  l ka+++g+WvlL ++ la p+ l++++++           l  +      +  +h++fR++  ++p+
    CCE31057.1 790 TNFAQRLDQFDIQISGGSGafAFSFVEGNLIKAVRNGDWVLLDEINLAsPDTLESIADLltgpqerpsilL--SetgeieKIVAHPDFRIFGAMNPA 884
                   578888888878899999954455899999******************56666666666555555555542..0557766778899******99999 PP

                   T.....TS-HHHHHTSEEEEE--- CS
  Dynein_heavy  98 p.....kfPislLqssikvtnepP 116
                   +     ++Pi++  + + + +++P
    CCE31057.1 885 TdigkrDLPIGIRSRFTELYVKSP 908
                   966665677777777666666665 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 9.2e-05
                    EETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH.................HHTT-EEEEEEES CS
  Dynein_heavy   34 vslGqgqeeeaekalekaakegsWvlLqNchla.pswlkeLekileel..........eeklhssfRlwltsep 96  
                    vs  +g+ +  e +l +a+++g+W++L +  la ++ l+ L+++l++             + h++f l+ t +p
    CCE31057.1 1135 VSGPDGKLRFQEGLLVQAMRQGHWIVLDELNLApTDVLEALNRLLDDNrellipetqeVVRPHENFILFATQNP 1208
                    555555666677899******************778899*****886667788877554455789999999876 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.98
                    HHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH.............HHT.......T-EEEEEEES-TTS CS
  Dynein_heavy   47 alekaakegsWvlLqNchla.pswlkeLekileel......eeklhs.......sfRlwltsepspkf 100 
                    al +a++ g++ lL ++ la  s l++L+++le        e+ +++        f+ + t++p  +f
    CCE31057.1 1501 ALVEAMRGGHFFLLDEISLAdDSVLERLNSVLEPGrtlllaEKGVDNsfvvgadGFQFFATMNPGGDF 1568
                    7899****************778899*****8733345665333333344444466777777776666 PP

  == domain 6  score: 14.8 bits;  conditional E-value: 7e-05
                    HHHHHT-EEEEE-GGG-.CCCHHHHHHH.................HHTT-EEEEEEES-T......TS-HHHH CS
  Dynein_heavy   50 kaakegsWvlLqNchla.pswlkeLekileel..........eeklhssfRlwltsepsp......kfPislL 105 
                    +a+++g+WvlL ++ la +s l+ L+  l++             k h++fRl+   +p++       +P s+ 
    CCE31057.1 1826 QAMQKGEWVLLDEMNLAsQSVLEGLNACLDHRgevyiseldqVFKRHPDFRLFAAQNPHHqgggrkGLPASFV 1898
                    79***************7778999**9976556666766666445599*******999985555533555555 PP

  == domain 7  score: 15.9 bits;  conditional E-value: 3.3e-05
                    HHHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH.......................HHTT-EEEEEEES-T CS
  Dynein_heavy   46 kalekaakegsWvlLqNchla.pswlkeLekileel................eeklhssfRlwltsepsp 98  
                     ++ ka  +g+W++L N  ++ +s l++L+++le                    + h++fR++lt++p+ 
    CCE31057.1 2216 GVIVKALVTGQWLVLDNANMCnASVLDRLNSLLEPNgflsinehcdsdgkprMIRPHPDFRIFLTMDPKI 2285
                    57899****************888999*****77545677777777778877556688********9975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0      0.01       3.2       7      32 ..     306     331 ..     301     355 .. 0.82
   2 !   18.0   0.0   8.4e-06    0.0026       4      57 ..     637     681 ..     634     704 .. 0.90
   3 ?    7.2   0.0     0.018       5.7       8     118 ..    1091    1181 ..    1084    1194 .. 0.80
   4 !   19.2   0.0   3.5e-06    0.0011       8     115 ..    1383    1531 ..    1376    1549 .. 0.69
   5 !    8.4   0.0    0.0076       2.4       5      57 ..    1760    1803 ..    1756    1856 .. 0.87
   6 ?   -1.1   0.0       6.5     2e+03      10      27 ..    2075    2092 ..    2072    2130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.01
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldee 32 
                  ++++G +G+GKT  + +l++ql ++
  CCE31057.1 306 PILLHGMAGVGKTSFVHELAMQLGKY 331
                 689*******************9754 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 8.4e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdll 57 
                 ++  ++++Ge+G+GKTt++++l+++l         r +++ v+l+++++  dll
  CCE31057.1 637 HEEPVLLVGETGIGKTTVVQQLADSL---------RHKLIAVNLSQQSEVGDLL 681
                 566789********************.........9********9999888776 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.018
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr 104 
                  +++ G++ +GKT  ++ l++           + ++v+++  + t++++ l   ++  +         + ++ e l  ++ +++    +++DE     
  CCE31057.1 1091 VLIQGPTSAGKTSMIEYLANFT---------GNKFVRINNHEHTDLQEYLGTYVSGPDG--------KLRFQEGLLVQAMRQGH--WIVLDELNLA- 1167
                  5788*****************9.........9************888887777777774........45555555566666666..8999999998. PP

      AAA_22  105 seealeeLrsllnl 118 
                  + ++le L +ll++
  CCE31057.1 1168 PTDVLEALNRLLDD 1181
                  88888888887775 PP

  == domain 4  score: 19.2 bits;  conditional E-value: 3.5e-06
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaee..............erpevv...fvtlpsstsskdllrellralglelka................. 70  
                  ++++Ge+G+GKTt+++ l+e l++e ++ +              +  +v     +t + s +++++l  l +a+   l++                 
  CCE31057.1 1383 VLLVGETGCGKTTVVQLLAEALQQELHIVNahqntetgdligsqR--PVRnrgAITEALSADLTTILGSLGHAIPPTLDEklaqyktldvsimntip 1477
                  789*******************98877777666666666665431..22223455555555555555555555555555577778888888888888 PP

      AAA_22   71 .........erlsseellealeqalrarav.ielliiDEaqhlrseealeeLrsl 115 
                           ++ +s++l+e    al ++++  +++++DE+     + +le L s 
  CCE31057.1 1478 qslrdrivaNETRSKALFEWSDGALVEAMRgGHFFLLDEISLA-DDSVLERLNSV 1531
                  8888888877777777777777777777777778888887777.66666666555 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.0076
      AAA_22    5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdll 57  
                  ++ +++ G +G+GKTtl++ l +           ++++ +++l+ +t++ dl+
  CCE31057.1 1760 QKPILLEGSPGVGKTTLVAALSQAC---------GRPLTRINLSDQTDLMDLF 1803
                  5679999*************99987.........8888888888888777775 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 6.5
      AAA_22   10 vtGesGtGKTtllrrlle 27  
                  +  +sG GK+ ll+ ++ 
  CCE31057.1 2075 LSSPSGYGKSSLLNYVAA 2092
                  6669*********99876 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0045       1.4      10     122 ..     292     403 ..     284     427 .. 0.73
   2 !   16.6   0.1   1.5e-05    0.0048       5      59 ..     621     672 ..     618     680 .. 0.82
   3 !   10.2   0.0    0.0015      0.46      11     130 ..    1077    1192 ..    1071    1226 .. 0.77
   4 !   16.9   0.0   1.3e-05    0.0041       6      81 ..    1364    1438 ..    1360    1448 .. 0.76
   5 !    7.9   0.0    0.0072       2.3      14      72 ..    1752    1804 ..    1741    1886 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0045
                      HHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHT..TTSEEEEET CS
  Sigma54_activat  10 elleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfeka..dgGtlfLDe 101
                        +e+++++ + d ++l++G  G+GK+ + + +  +  +  + +v++   + ++  +   L+  +  +  G+ + + G + +a  +g  +++++
       CCE31057.1 292 GNMERLATLLRDDDPILLHGMAGVGKTSFVHELAMQLGK-YSDMVTLHLNEQTDAKMLIGLY--STDSKPGSFQWRPGVLTTAvrEGRWVLIED 382
                      5678888899999**************999888766553.4446666655554444333444..455667777899999998854566788999 PP

                      GGGS-HHHHHHHHHHHHHSEE CS
  Sigma54_activat 102 igelplelQekLlrvlqegev 122
                      + + p+e+ + Ll +++++e+
       CCE31057.1 383 LDRAPTEVLSTLLPLIERKEL 403
                      999999999999999999885 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.5e-05
                      SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETT CS
  Sigma54_activat   5 sealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavnca 59 
                      +++ k+lleqi+ ++k++ +vl++Ge+G GK+++ +++ ++ +   ++++avn +
       CCE31057.1 621 TAHAKRLLEQIAVAIKHEEPVLLVGETGIGKTTVVQQLADSLR---HKLIAVNLS 672
                      5678999***************************999876544...556777765 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0015
                       HHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHT..TTSEEEEE CS
  Sigma54_activat   11 lleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfeka..dgGtlfLD 100 
                       ll+ ++++ + + +vli+G + +GK+ + + + + +    ++fv++n  + ++  l+  L  +++G   G  + ++Gl+ +a  +g  + LD
       CCE31057.1 1077 LLNLVRATSTRRFPVLIQGPTSAGKTSMIEYLANFT---GNKFVRINNHEHTD--LQEYLGTYVSG-PDGKLRFQEGLLVQAmrQGHWIVLD 1162
                       667778888889**************9988877665...588****9876544..56666666666.589999999*999885456789*** PP

                       TGGGS-HHHHHHHHHHHHHSEEESBTSSSE CS
  Sigma54_activat  101 eigelplelQekLlrvlqegevervGsske 130 
                       e++  p+++ e L r+l++++   + +++e
       CCE31057.1 1163 ELNLAPTDVLEALNRLLDDNRELLIPETQE 1192
                       *****************9987666666554 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 1.3e-05
                       HHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTT CS
  Sigma54_activat    6 ealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGA 81  
                       +a+++l+  ++++ k++ +vl++Ge+G+GK+++ +++ ea +++  ++v+      + +l+ s+    ++Ga t A
       CCE31057.1 1364 HAMRRLYVLVSRALKNNEPVLLVGETGCGKTTVVQLLAEALQQEL-HIVNAHQNTETGDLIGSQRPVRNRGAITEA 1438
                       689999999**************************9988776433.344444444455677777666666666666 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.0072
                       HHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHE CS
  Sigma54_activat   14 qikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFG 72  
                       ++ ++ +++ ++l++G  G+GK++l  a+ +a     +p+ ++n ++ ++ l+  +LFG
       CCE31057.1 1752 RVVRALQMQKPILLEGSPGVGKTTLVAALSQACG---RPLTRINLSDQTD-LM--DLFG 1804
                       566788999**************99998877665...6777888776543.22..3555 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0051       1.6      12      79 ..     284     353 ..     279     444 .. 0.75
   2 ?    4.7   0.0     0.038        12      19      72 ..     625     678 ..     612     687 .. 0.82
   3 ?    5.8   0.0     0.018       5.6      82     223 ..     823     975 ..     810     980 .. 0.72
   4 !   15.4   0.0   2.2e-05     0.007      11     103 ..    1066    1174 ..    1062    1208 .. 0.76
   5 !   13.0   0.0   0.00012     0.038       8      70 ..    1356    1418 ..    1353    1425 .. 0.92
   6 ?   -2.6   0.0       6.7   2.1e+03     135     164 ..    1556    1586 ..    1552    1638 .. 0.80
   7 !    8.0   0.0    0.0038       1.2      20      72 ..    1748    1800 ..    1741    1805 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0051
       AAA_6  12 LviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakq..vvvfncsdqldykslgkifk 79 
                 Lv+T  t      l++ l+      ++G ag GKt  v +La +l+k+  +v ++ ++q d+k+l  +++
  CCE31057.1 284 LVMTKTTTGNMERLATLLRDDDPILLHGMAGVGKTSFVHELAMQLGKYsdMVTLHLNEQTDAKMLIGLYS 353
                 555555555555555555555556689*******************984467788999999999987776 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.038
       AAA_6  19 drcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldyk 72 
                  r    ++ A+k +    + G +g GKt  v++La +l + ++ +n s+q ++ 
  CCE31057.1 625 KRLLEQIAVAIKHEEPVLLVGETGIGKTTVVQQLADSLRHKLIAVNLSQQSEVG 678
                 55566677778888888899****************************998765 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.018
       AAA_6  82 aqsGaWgCfdeFnrielevLSvvaqqiktiqqalkekkkkfvfegkeiklnksvgifitmnp.gyagrteLPdnLkalfRpvammvPdlel.....Iae 174
                 ++ G W+ +de+n  + + L  +a  ++  q+  +  +++ + e ++i  +++++if  mnp +  g+ +LP  +++ f ++ +  Pd++l     I++
  CCE31057.1 823 VRNGDWVLLDEINLASPDTLESIADLLTGPQERPSILLSE-TGEIEKIVAHPDFRIFGAMNPaTDIGKRDLPIGIRSRFTELYVKSPDTDLkdlltIIK 920
                 5679999999999999999999999998887776666655.346678999************4457*********************987533222555 PP

       AAA_6 175 imLfseGfkeakelakklvtlykllseqlskqdhyd.......fglralksvlkaa 223
                 + L  +  ++ ++ a  +  ly  ++++ ++++  d       f+lr+l+ vl+++
  CCE31057.1 921 TYLGNTS-TKHDQAADDVARLYMNTKRMAQEKRLVDganevphFSLRTLTRVLSYV 975
                 5554433.344556667777776666655555444333333337777777777765 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 2.2e-05
       AAA_6   11 rLviTpltdrcyltltqAlklklg.gapaGpagtGKtEtvkdLakalakqvvvfncsdqldyksl.g..........kifkGl....aqsGaWgCfd 91  
                    +iTp  +r  l l++A +++     ++Gp+ +GKt  +  La+  ++ +v +n +++ d +   g          ++ +Gl    +++G W+ +d
  CCE31057.1 1066 DYIITPYVERNLLNLVRATSTRRFpVLIQGPTSAGKTSMIEYLANFTGNKFVRINNHEHTDLQEYlGtyvsgpdgklRFQEGLlvqaMRQGHWIVLD 1162
                  569****************998761678*******************************99875413111112222234455532223467777777 PP

       AAA_6   92 eFnrielevLSv 103 
                  e+n   ++vL +
  CCE31057.1 1163 ELNLAPTDVLEA 1174
                  777777777765 PP

  == domain 5  score: 13.0 bits;  conditional E-value: 0.00012
       AAA_6    8 nserLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqld 70  
                  n + +v T    r y+ + +Alk +    + G +g GKt  v+ La+al + + ++n +++ +
  CCE31057.1 1356 NAQGVVWTHAMRRLYVLVSRALKNNEPVLLVGETGCGKTTVVQLLAEALQQELHIVNAHQNTE 1418
                  6678999**************************************************998765 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 6.7
       AAA_6  135 vgifitmnp.gyagrteLPdnLkalfRpvam 164 
                  +++f tmnp g  g++eL   L+  f ++ +
  CCE31057.1 1556 FQFFATMNPgGDFGKKELSPALRNRFTEIWV 1586
                  57899***95578999999999999987754 PP

  == domain 7  score: 8.0 bits;  conditional E-value: 0.0038
       AAA_6   20 rcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldyk 72  
                     + +++Al+++    ++G+ g GKt  v  L++a ++ ++ +n sdq d  
  CCE31057.1 1748 LNAMRVVRALQMQKPILLEGSPGVGKTTLVAALSQACGRPLTRINLSDQTDLM 1800
                  55577899*****************************************9975 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00062       0.2      81     123 ..     285     328 ..     280     346 .. 0.84
   2 !   15.0   0.2   5.4e-05     0.017      71     130 ..     610     669 ..     589     679 .. 0.75
   3 ?   -0.4   0.0         3   9.4e+02     102     123 ..    1091    1112 ..    1063    1125 .. 0.74
   4 !   12.1   0.0   0.00042      0.13      67     134 ..    1347    1415 ..    1314    1420 .. 0.75
   5 ?    7.5   0.0     0.011       3.6      91     122 ..    1751    1783 ..    1735    1797 .. 0.75
   6 ?    5.8   0.0     0.038        12      91     120 ..    2061    2091 ..    2052    2100 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00062
                  E--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  81 lvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpel 123
                  ++ ++t+ ++e+l++ll+d + ++l G  GvGK++++ +l+ +l
   CCE31057.1 285 VMTKTTTGNMERLATLLRDdDPILLHGMAGVGKTSFVHELAMQL 328
                  566778899*********989999**************998764 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 5.4e-05
                  HHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  71 elealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  +l++   ++++  a+ k+ le+++ ++k+ + ++lvG++G+GK+t++ +l+ +l+ k  +v
   CCE31057.1 610 KLQKS-KRPFASTAHAKRLLEQIAVAIKHeEPVLLVGETGIGKTTVVQQLADSLRHKLIAV 669
                  44444.4556666888999********9988999*****************9876665444 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 3
                   EEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  102 svlvGqSGvGKStLinallpel 123 
                   +++ G++ +GK+++i+ l++ +
   CCE31057.1 1091 VLIQGPTSAGKTSMIEYLANFT 1112
                   4567************998755 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 0.00042
                   HHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S------ CS
  RsgA_GTPase   67 elkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevsekl 134 
                   elk   +a + + +++    ++ +  ++++lk+ + ++lvG++G GK+t++  l++ l+++ + v +++
   CCE31057.1 1347 ELKMVAKASNAQGVVWTHAMRRLYVLVSRALKNnEPVLLVGETGCGKTTVVQLLAEALQQELHIVNAHQ 1415
                   55555555555555555555555556677888878899******************9999988777665 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.011
                   HHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase   91 eelkellkd.ktsvlvGqSGvGKStLinallpe 122 
                    ++ ++l+  k ++l G+ GvGK+tL+ al + 
   CCE31057.1 1751 MRVVRALQMqKPILLEGSPGVGKTTLVAALSQA 1783
                   4444555553888999************99875 PP

  == domain 6  score: 5.8 bits;  conditional E-value: 0.038
                   HHHHHHCTTSE.EEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase   91 eelkellkdkt.svlvGqSGvGKStLinall 120 
                   e++   +k+++ ++l  +SG GKS+L+n ++
   CCE31057.1 2061 ESIMVCVKQNIpCILSSPSGYGKSSLLNYVA 2091
                   555556666442578899**********875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00065      0.21      11      45 ..     294     330 ..     286     336 .. 0.76
   2 !   15.5   0.0     4e-05     0.013       6      46 ..     623     665 ..     617     671 .. 0.73
   3 ?    3.6   0.0      0.19        61      21      47 ..    1087    1118 ..    1070    1133 .. 0.73
   4 !   12.7   0.0    0.0003     0.096      16      46 ..    1375    1407 ..    1361    1413 .. 0.75
   5 !   10.3   0.0    0.0017      0.53      14      44 ..    1753    1785 ..    1742    1792 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00065
                 HHHHHHCH..TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  11 gkklakal..gdvilLeGdLGaGKTtlvrglakalgv 45 
                  ++la+ l   d ilL+G  G+GKT +v++la +lg 
  CCE31057.1 294 MERLATLLrdDDPILLHGMAGVGKTSFVHELAMQLGK 330
                 4555555554778*******************99975 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4e-05
                 HHHHHHHHHHHCH..TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE   6 etealgkklakal..gdvilLeGdLGaGKTtlvrglakalgve 46 
                 + ++l +++a a+  ++ +lL G+ G GKTt v++la +l ++
  CCE31057.1 623 HAKRLLEQIAVAIkhEEPVLLVGETGIGKTTVVQQLADSLRHK 665
                 444555555554454556*********************9987 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.19
                  E...EEEEESTTSSHHHHHHHHHHHTT--..- CS
        TsaE   21 v...ilLeGdLGaGKTtlvrglakalgve..e 47  
                      +l++G+  aGKT ++  la+  g +  +
  CCE31057.1 1087 RrfpVLIQGPTSAGKTSMIEYLANFTGNKfvR 1118
                  144599****************9988876545 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 0.0003
                  HCH..TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE   16 kal..gdvilLeGdLGaGKTtlvrglakalgve 46  
                  +al  ++ +lL G+ G+GKTt v+ la+al+ e
  CCE31057.1 1375 RALknNEPVLLVGETGCGKTTVVQLLAEALQQE 1407
                  33333556*********************9876 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 0.0017
                  HHHCH..TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE   14 lakal..gdvilLeGdLGaGKTtlvrglakalg 44  
                  + +al  ++ ilLeG  G+GKTtlv +l +a+g
  CCE31057.1 1753 VVRALqmQKPILLEGSPGVGKTTLVAALSQACG 1785
                  3343333667******************99987 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0022      0.69       1      25 [.     307     338 ..     307     392 .. 0.74
   2 ?    5.0   0.0      0.11        34       1      27 [.     641     670 ..     641     716 .. 0.77
   3 ?    5.5   0.0     0.074        23       1      65 [.    1091    1154 ..    1091    1176 .. 0.74
   4 !   10.7   0.0    0.0019       0.6       1      49 [.    1383    1432 ..    1383    1468 .. 0.76
   5 !   14.9   0.0   9.6e-05      0.03       1      34 [.    1763    1799 ..    1763    1870 .. 0.74
   6 ?   -1.1   0.0       8.5   2.7e+03       4      68 ..    2076    2144 ..    2074    2192 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0022
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf......g 25 
                 Ill G++GvGKt++ +eL+  l ++      +
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLgKYsdmvtlH 338
                 89****************99974444444442 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.11
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...gvn 27 
                 +ll G  G GKtt+ + L+++l      vn
  CCE31057.1 641 VLLVGETGIGKTTVVQQLADSLRHkliAVN 670
                 7899**************998722345444 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.074
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf....gvnlrdvakenglllevdpealdeskrldedkldklldale 65  
                  +l+ G+  +GKt++ ++L++ +g+      n+ ++  +++l ++v  +  d ++r++e+    l++a++
  CCE31057.1 1091 VLIQGPTSAGKTSMIEYLANFTGNkfvrINNHEHTDLQEYLGTYVSGP--DGKLRFQEGL---LVQAMR 1154
                  7899**************998777788777777777777777777777..7777777666...444444 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.0019
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf...gvnlrdvakenglllevdpealdes 49  
                  +ll G  G+GKtt+ + L++ l+     vn  ++   ++l  ++ p   ++ 
  CCE31057.1 1383 VLLVGETGCGKTTVVQLLAEALQQelhIVNAHQNTETGDLIGSQRPV--RNR 1432
                  7899**************99984445666666666666666666666..554 PP

  == domain 5  score: 14.9 bits;  conditional E-value: 9.6e-05
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf...gvnlrdvake 34  
                  Ill G pGvGKttl  +Ls+ +g     +nl+d    
  CCE31057.1 1763 ILLEGSPGVGKTTLVAALSQACGRpltRINLSDQTDL 1799
                  89******************98667774444444333 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 8.5
      AAA_18    4 tGtpGvGKttlakeLskrlgf...gvnlrdvakenglllevdpe.aldeskrldedkldklldaleens 68  
                  + ++G GK++l ++++ + g    ++  +  +   +l+ +++++  l+e + + ++ + +l++ ++   
  CCE31057.1 2076 SSPSGYGKSSLLNYVAALSGKplaVFPMNADIDTMDLVGGFEQAdPLREVNAALIELRGYLQNSVMSLV 2144
                  557899*********998644788999999999999999999998888888888888888888777655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.098        31       4      45 ..     306     346 ..     303     358 .. 0.85
   2 !    8.8   0.0    0.0049       1.5       3      43 ..     639     676 ..     637     715 .. 0.88
   3 !   14.6   0.0   7.8e-05     0.025       4      93 ..    1090    1185 ..    1087    1190 .. 0.74
   4 ?    7.4   0.0     0.013       4.1       2      39 ..    1380    1414 ..    1379    1440 .. 0.79
   5 !   10.8   0.0    0.0012      0.37       2      96 ..    1760    1861 ..    1759    1864 .. 0.68
   6 ?   -0.8   0.1       4.6   1.5e+03      31      86 ..    3280    3332 ..    3259    3339 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.098
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkk 45 
                 ++++ G+  vGKT ++++l+ +l  k ++++ + l++++d+k
  CCE31057.1 306 PILLHGMAGVGKTSFVHELAMQLG-KYSDMVTLHLNEQTDAK 346
                 7899****************8888.88999999998888765 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0049
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderd 43 
                 ++++++G   +GKTt+++ql+++l     + + +nl ++++
  CCE31057.1 639 EPVLLVGETGIGKTTVVQQLADSLR---HKLIAVNLSQQSE 676
                 689999***************8888...9999999998776 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 7.8e-05
      AAA_14    4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderd......kkladpe........kllelileklkeekktylflDEiqevpe.wekalks 85  
                  +++i+G+  +GKT +++ l++      ++++ in  +++d      +              ++ e +l ++++ + ++++lDE   +p+ + +al++
  CCE31057.1 1090 PVLIQGPTSAGKTSMIEYLANFTG---NKFVRINNHEHTDlqeylgT-----YvsgpdgklRFQEGLLVQAMR-QGHWIVLDELNLAPTdVLEALNR 1177
                  789*************99995555...99999998887774333331.....123333545566666666556.8999********985499***** PP

      AAA_14   86 lvdegknl 93  
                  l+d++++l
  CCE31057.1 1178 LLDDNREL 1185
                  ***98765 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.013
      AAA_14    2 rkilvitGaRrvGKTtllkqlikellvkkesilyinld 39  
                  +++++++G   +GKTt+++ l++ l    ++   +n  
  CCE31057.1 1380 NEPVLLVGETGCGKTTVVQLLAEALQ---QELHIVNAH 1414
                  7899**************99987666...455555544 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.0012
      AAA_14    2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderd.............kkladpekllelileklke.........ekktylflDEiqev 76  
                  +k+++++G   vGKTtl+  l +      +    inl d++d             +++ +++                     +k ++++lDE+  +
  CCE31057.1 1760 QKPILLEGSPGVGKTTLVAALSQACG---RPLTRINLSDQTDlmdlfgtdvpvegEEAGNFA-----------WrdapflqamQKGEWVLLDEMNLA 1842
                  58999***************998777...99********99955554444444332222332...........022333444558999*****9987 PP

      AAA_14   77 pe.wekalkslvdegknldvi 96  
                  ++ + + l+ ++d++  ++v+
  CCE31057.1 1843 SQsVLEGLNACLDHR--GEVY 1861
                  542677788888866..4555 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 4.6
      AAA_14   31 esilyinldderdkkladpekllelileklkeekktylflDEiqevpewekalksl 86  
                  ++   +n+ ++ + ++a +  l +l  + +k++ +++ + DEi +++++ ++++s+
  CCE31057.1 3280 KNSKKYNFYTDANLTEARQ--LVSLAHK-IKARFRELQLVDEIGHMQTLADVIQSC 3332
                  3444444444444333322..3333333.333467799*************99876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00044      0.14       2      26 ..     306     330 ..     305     337 .. 0.90
   2 !   13.2   0.0   0.00019     0.061       2      26 ..     640     664 ..     639     670 .. 0.91
   3 !   12.5   0.0   0.00033       0.1       2      27 ..    1382    1407 ..    1381    1413 .. 0.92
   4 !   10.4   0.0    0.0014      0.45       2      23 ..    1762    1783 ..    1761    1788 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00044
                 CEEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawae 26 
                 +++l+G aG+GKT ++++la+++ +
  CCE31057.1 306 PILLHGMAGVGKTSFVHELAMQLGK 330
                 799*****************99875 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00019
                 CEEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawae 26 
                 +v+l Ge G+GKTt +q+la+ +++
  CCE31057.1 640 PVLLVGETGIGKTTVVQQLADSLRH 664
                 699*****************99976 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00033
                  CEEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT    2 lvilqGeaGsGKTtLlqklalawaeg 27  
                  +v+l Ge G+GKTt +q la+a++++
  CCE31057.1 1382 PVLLVGETGCGKTTVVQLLAEALQQE 1407
                  699*******************9985 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.0014
                  CEEEEC-TTTCHHHHHHHHHHH CS
       NACHT    2 lvilqGeaGsGKTtLlqklala 23  
                  +++l+G +G+GKTtL++ l +a
  CCE31057.1 1762 PILLEGSPGVGKTTLVAALSQA 1783
                  689**************99987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00058      0.18       2      32 ..     307     343 ..     307     391 .. 0.76
   2 !   10.8   0.0    0.0013      0.42       2      40 ..     641     685 ..     641     779 .. 0.62
   3 ?    1.8   0.0      0.78   2.5e+02       2      80 ..    1091    1166 ..    1091    1202 .. 0.66
   4 !    9.4   0.0    0.0036       1.1       2      43 ..    1383    1428 ..    1383    1499 .. 0.73
   5 !   11.9   0.0   0.00058      0.18       2      44 ..    1763    1809 ..    1763    1866 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00058
      AAA_33   2 vllvGlpGsGKstlaerllkklg......avllssdt 32 
                 +ll+G++G+GK+ ++++l+ +lg      + +l++ t
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLGkysdmvTLHLNEQT 343
                 689********************99995555555555 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0013
      AAA_33   2 vllvGlpGsGKstlaerllkklg....avllssdtlrrrlfg..t 40 
                 vllvG  G GK+t++++l+  l     av ls+ ++   l g  +
  CCE31057.1 641 VLLVGETGIGKTTVVQQLADSLRhkliAVNLSQQSEVGDLLGgfK 685
                 799****************99999998999999987777766442 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.78
      AAA_33    2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnl 80  
                  vl+ G+  +GK+  +e l++ +g  +v+++  + ++ l +   +    y    d   +++++l+ +a+++g  ++ld  nl
  CCE31057.1 1091 VLIQGPTSAGKTSMIEYLANFTGnkFVRINNHE-HTDLQEYLGT----YVSGPDGKLRFQEGLLVQAMRQGHWIVLDELNL 1166
                  6788**************988888899998775.4444432221....222233334455555555555555555555555 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0036
      AAA_33    2 vllvGlpGsGKstlaerllkklg....avllssdtlrrrlfgtdqq 43  
                  vllvG  G+GK+t+++ l+++l+     v   ++t+   l g++++
  CCE31057.1 1383 VLLVGETGCGKTTVVQLLAEALQqelhIVNAHQNTETGDLIGSQRP 1428
                  799****************999977545555555655555554444 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 0.00058
      AAA_33    2 vllvGlpGsGKstlaerllkklg..avllssdt..lrrrlfgtdqqs 44  
                  +ll G pG+GK+tl+  l ++ g   ++++  +   +  lfgtd++ 
  CCE31057.1 1763 ILLEGSPGVGKTTLVAALSQACGrpLTRINLSDqtDLMDLFGTDVPV 1809
                  6899****************999996665544311444666666654 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.25        79      12      55 ..     295     338 ..     287     404 .. 0.81
   2 !   15.6   0.1   4.2e-05     0.013       1      44 [.     618     661 ..     618     681 .. 0.86
   3 ?    4.2   0.0      0.13        42      17      54 ..    1084    1119 ..    1075    1149 .. 0.78
   4 !   16.3   0.0   2.5e-05    0.0079       6      56 ..    1365    1415 ..    1361    1428 .. 0.84
   5 ?    1.8   0.0      0.77   2.4e+02      13      47 ..    1752    1786 ..    1743    1810 .. 0.77
   6 ?   -0.6   0.0       4.3   1.3e+03      16      59 ..    2065    2108 ..    2056    2124 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.25
                      HHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTT CS
  Sigma54_activ_2  12 erLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvve 55 
                      erL+ + +   p++l G +G gk+++   L+ + g+ +++++++
       CCE31057.1 295 ERLATLLRDDDPILLHGMAGVGKTSFVHELAMQLGKYSDMVTLH 338
                      7999999***********************99999999988774 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4.2e-05
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--T CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhkn 44 
                      ++++a  ++l e++++a + + pv+l+Ge G gk++v + L+++
       CCE31057.1 618 FASTAHAKRLLEQIAVAIKHEEPVLLVGETGIGKTTVVQQLADS 661
                      57888999******************************999876 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.13
                       HHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SST CS
  Sigma54_activ_2   17 aaqsklpvfltGekGsgkelvArlLhknsgpwleifvv 54  
                        + + +pv++ G+  +gk+++ ++L+++ g+  + +++
       CCE31057.1 1084 TSTRRFPVLIQGPTSAGKTSMIEYLANFTGN--KFVRI 1119
                       56789**********************9987..33333 PP

  == domain 4  score: 16.3 bits;  conditional E-value: 2.5e-05
                       HHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTH CS
  Sigma54_activ_2    6 aiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvver 56  
                       a+ +l   +  a +++ pv+l+Ge G+gk++v +lL++  ++ l+i++ ++
       CCE31057.1 1365 AMRRLYVLVSRALKNNEPVLLVGETGCGKTTVVQLLAEALQQELHIVNAHQ 1415
                       566666677788899***********************9999999988754 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.77
                       HHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS- CS
  Sigma54_activ_2   13 rLeqaaqsklpvfltGekGsgkelvArlLhknsgp 47  
                       r+  a q + p++l G +G gk++   +L++  g+
       CCE31057.1 1752 RVVRALQMQKPILLEGSPGVGKTTLVAALSQACGR 1786
                       5556779999*************999999887666 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 4.3
                       HHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH CS
  Sigma54_activ_2   16 qaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlak 59  
                       + ++++ p  l ++ G gk++  ++ +  sg+ l++f ++ +++
       CCE31057.1 2065 VCVKQNIPCILSSPSGYGKSSLLNYVAALSGKPLAVFPMNADID 2108
                       5568999*************************999999987765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0081       2.6       1      26 [.     307     332 ..     307     355 .. 0.84
   2 !    9.9   0.0    0.0029      0.92       1      26 [.     641     666 ..     641     679 .. 0.83
   3 ?    2.5   0.0      0.61   1.9e+02       1      26 [.    1091    1116 ..    1091    1139 .. 0.80
   4 !   12.9   0.0   0.00034      0.11       1      27 [.    1383    1409 ..    1383    1428 .. 0.83
   5 ?    5.9   0.0     0.052        16       1      24 [.    1763    1786 ..    1763    1801 .. 0.84
   6 ?    0.3   0.0       2.8   8.8e+02       2      19 ..    2074    2091 ..    2073    2107 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0081
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   i+l+G +g+GK+++++eLa +l k +
    CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLGKYS 332
                   689******************99665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0029
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   ++l+G++g+GK+t++++La++l  kl
    CCE31057.1 641 VLLVGETGIGKTTVVQQLADSLRHKL 666
                   5799****************998776 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.61
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkkl 26  
                    ++++Gp+  GK++++++La+   +k+
    CCE31057.1 1091 VLIQGPTSAGKTSMIEYLANFTGNKF 1116
                    6799*************998777666 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 0.00034
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkklk 27  
                    ++l+G++g+GK+t+++ La+al+++l 
    CCE31057.1 1383 VLLVGETGCGKTTVVQLLAEALQQELH 1409
                    5799*******************9883 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.052
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallk 24  
                    i+l G++g+GK+tl+  L++a  +
    CCE31057.1 1763 ILLEGSPGVGKTTLVAALSQACGR 1786
                    6799*************9988765 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 2.8
  RNA_helicase    2 wlyGpsgeGKStlakeLa 19  
                    +l+ psg GKS+l +++a
    CCE31057.1 2074 ILSSPSGYGKSSLLNYVA 2091
                    678899*********955 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.2        64     104     160 ..     280     334 ..     225     339 .. 0.72
   2 !   11.9   0.0   0.00026     0.082      49     153 ..     560     662 ..     547     671 .. 0.66
   3 !   13.0   0.0   0.00013      0.04     101     156 ..    1060    1115 ..    1050    1155 .. 0.84
   4 !    8.1   0.0    0.0039       1.2     120     163 ..    1371    1413 ..    1313    1438 .. 0.83
   5 ?    5.2   0.0      0.03       9.5     120     154 ..    1752    1785 ..    1738    1797 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.2
       T2SSE 104 tlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderi 160
                 + + l+++++++ +++++ ++ +r    il+ G  g GKt ++  l  ++ k+   +
  CCE31057.1 280 DPSSLVMTKTTTGNMERL-ATLLRDDDPILLHGMAGVGKTSFVHELAMQLGKY-SDM 334
                 567899999999999885.6666999****************99998888887.444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00026
       T2SSE  49 rlisriaalakldiseerplqdarlp..ekgvrlrvvllPvvagealviRkksakeltlddlgaeealk...ekiaevlrkavrerglilvsGgTgsGK 142
                  l++ ia  +++++++    ++a++p  ++ +r       v+   ++ +Rkk++++ +l++     a +   +++ e ++ a++++  +l+ G Tg GK
  CCE31057.1 560 HLTYAIAEEMHMSTDRADHYLSANIPplDETER-------VFSIGRAQLRKKKSASSKLQKSKRPFASTahaKRLLEQIAVAIKHEEPVLLVGETGIGK 651
                 566666666666666666666666663322222.......2344567788777777777766655544411155666666789999************* PP

       T2SSE 143 ttllyallkei 153
                 tt++  l   +
  CCE31057.1 652 TTVVQQLADSL 662
                 **998776665 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 0.00013
       T2SSE  101 keltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156 
                    ++ +d+++++ ++ ++ +++r+  ++r  +l+ G+T+ GKt ++  l ++  ++
  CCE31057.1 1060 TPIERQDYIITPYVERNLLNLVRATSTRRFPVLIQGPTSAGKTSMIEYLANFTGNK 1115
                  5677899******************9*****************9998777766555 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0039
       T2SSE  120 evlrkavrerglilvsGgTgsGKttllyallkeinksderivtv 163 
                   ++++a++++  +l+ G Tg GKtt++  l + ++++  +iv +
  CCE31057.1 1371 VLVSRALKNNEPVLLVGETGCGKTTVVQLLAEALQQE-LHIVNA 1413
                  467788899999**************99988888887.777765 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.03
       T2SSE  120 evlrkavrerglilvsGgTgsGKttllyallkein 154 
                  +v+r a++ ++ il+ G  g GKttl+ al +   
  CCE31057.1 1752 RVVR-ALQMQKPILLEGSPGVGKTTLVAALSQACG 1785
                  4455.4599******************99988765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       2.2     7e+02      14      47 ..     307     341 ..     297     364 .. 0.81
   2 !   13.8   0.0   0.00019     0.061       1      36 [.     628     663 ..     628     786 .. 0.91
   3 ?    1.2   0.0       1.6   4.9e+02      14      36 ..    1091    1113 ..    1085    1144 .. 0.81
   4 !   18.8   0.0   5.8e-06    0.0018       5      43 ..    1374    1412 ..    1372    1465 .. 0.80
   5 ?    4.9   0.0      0.12        36      12      33 ..    1761    1782 ..    1753    1803 .. 0.84
   6 ?    1.4   0.0       1.4   4.3e+02      15      34 ..    2074    2093 ..    2060    2097 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 2.2
                 EEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkpteGeilld.gk 47 
                 + + G  G GK++++  la +l + ++ ++l  ++
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLGKYSDMVTLHlNE 341
                 6799**************99999999888776433 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 0.00019
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllk 36 
                 l+++ + +k+ e v +vGe+G GK+t+++ la  l+
  CCE31057.1 628 LEQIAVAIKHEEPVLLVGETGIGKTTVVQQLADSLR 663
                 678999**********************99987765 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 1.6
                  EEEEESTTSSHHHHHHHHTTSS- CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   14 vaivGenGaGKStLlkllagllk 36  
                  v i G++ aGK+++++ la+ + 
  CCE31057.1 1091 VLIQGPTSAGKTSMIEYLANFTG 1113
                  5789*************998765 PP

  == domain 4  score: 18.8 bits;  conditional E-value: 5.8e-06
                  EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran    5 slklkegekvaivGenGaGKStLlkllagllkpteGeil 43  
                  s  lk++e v +vGe+G+GK+t+++lla+ l+++   ++
  CCE31057.1 1374 SRALKNNEPVLLVGETGCGKTTVVQLLAEALQQELHIVN 1412
                  6679999*********************99986544443 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.12
                  SEEEEEESTTSSHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   12 ekvaivGenGaGKStLlkllag 33  
                  + + + G+ G GK+tL+++l++
  CCE31057.1 1761 KPILLEGSPGVGKTTLVAALSQ 1782
                  557788*************987 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 1.4
                  EEEESTTSSHHHHHHHHTTS CS
                  xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   15 aivGenGaGKStLlkllagl 34  
                   +  ++G GKS+Ll+ +a l
  CCE31057.1 2074 ILSSPSGYGKSSLLNYVAAL 2093
                  56669*********998765 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.16        50      34      59 ..     305     330 ..     295     351 .. 0.86
   2 ?    6.4   0.0     0.021       6.7      34      65 ..     639     670 ..     619     691 .. 0.78
   3 ?    2.9   0.0      0.26        82       6      59 ..    1064    1114 ..    1060    1122 .. 0.84
   4 !   14.1   0.0   9.4e-05      0.03      19      77 ..    1369    1424 ..    1359    1434 .. 0.83
   5 !    7.7   0.0    0.0089       2.8      35      58 ..    1762    1785 ..    1748    1801 .. 0.83
   6 ?   -2.0   0.0       8.7   2.7e+03     100     155 ..    1974    2031 ..    1966    2033 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.16
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgv 59 
                 d +ll+G  G+Gkt++ + +a +lg 
  CCE31057.1 305 DPILLHGMAGVGKTSFVHELAMQLGK 330
                 889***************99999986 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.021
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkits 65 
                 + vll+G  G+Gktt+ + +a+ l  kl +  
  CCE31057.1 639 EPVLLVGETGIGKTTVVQQLADSLRHKLIAVN 670
                 459******************99998876554 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.26
      RuvB_N    6 leeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgv 59  
                   ++yi    v+ +l  +++a+ +r+ +   vl++Gp   Gkt++ + +a+  g 
  CCE31057.1 1064 RQDYIITPYVERNLLNLVRATSTRRFP---VLIQGPTSAGKTSMIEYLANFTGN 1114
                  578899999999999999999999876...8*************9999987665 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 9.4e-05
      RuvB_N   19 lkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaa 77  
                  l ++++ a k +e    vll+G  G Gktt+ +++a+ l+ +l+i  +    ++gdl++
  CCE31057.1 1369 LYVLVSRALKNNE---PVLLVGETGCGKTTVVQLLAEALQQELHIVNAHQNTETGDLIG 1424
                  5566666655555...59*****************************999999999986 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0089
      RuvB_N   35 hvllyGpPGlGkttlakiiakelg 58  
                   +ll G+PG+Gkttl + +++  g
  CCE31057.1 1762 PILLEGSPGVGKTTLVAALSQACG 1785
                  58*************999988766 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 8.7
      RuvB_N  100 veevlysamedfrldivigkGpsarsikldlpk.ft.lvgattragllssPlrdrfgi 155 
                   + vl  a  d  ldi++ +   ++  + ++++ f+ +vg   r+  l + l +rfg 
  CCE31057.1 1974 SDPVLQRAQMDDFLDIIVRQRFRTTRDREEVTElFArVVGWQPRSHSLYHNLNSRFGQ 2031
                  56678788777779***99887666665555542543889999999999999999996 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.21        67       2      23 ..     307     328 ..     306     336 .. 0.87
   2 !    9.4   0.0    0.0029       0.9       2      28 ..     641     667 ..     640     690 .. 0.89
   3 !    8.3   0.0    0.0062       1.9       2      26 ..    1383    1407 ..    1382    1423 .. 0.89
   4 !    7.8   0.0     0.009       2.8       2      23 ..    1763    1784 ..    1762    1790 .. 0.88
   5 ?    4.2   0.0      0.12        37      54     112 ..    3263    3327 ..    3247    3344 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.21
                 EEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlell 23 
                 +++ G+ GvGKt +v+ ++ +l
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQL 328
                 6789************999887 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0029
                 EEEE--TTSSHHHHHHHHHHHH...GG CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgv 28 
                 v++ G+ G+GKtT+v+++++ l+++ +
  CCE31057.1 641 VLLVGETGIGKTTVVQQLADSLRHKLI 667
                 6899******************88755 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0062
                  EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1    2 vfiTGppGvGKtTlvkkvlellkss 26  
                  v++ G+ G GKtT+v+ ++e+l+++
  CCE31057.1 1383 VLLVGETGCGKTTVVQLLAEALQQE 1407
                  6899******************876 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.009
                  EEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1    2 vfiTGppGvGKtTlvkkvlell 23  
                  +++ G+pGvGKtTlv  +++++
  CCE31057.1 1763 ILLEGSPGVGKTTLVAALSQAC 1784
                  6789***********9998876 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.12
                  T--EEEEEETT..---SSEETTEEE-HHH..HHHHHHHHHHHHH..HHH-EEEE---STTGGG-H CS
    NTPase_1   54 sgeegiLarve..akreprvgkyvvdves..feelalealrkal..seadviviDEiGkmElksk 112 
                  ++ e+  ++v+  +++  + +ky + +++   e   l +l +++  +  ++ ++DEiG m   + 
  CCE31057.1 3263 QKAEELQSSVSssDNKDKNSKKYNFYTDAnlTEARQLVSLAHKIkaRFRELQLVDEIGHMQTLAD 3327
                  55555556665554455555666655554334444444444444347889**********87655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0         3   9.5e+02      25      52 ..     307     334 ..     304     365 .. 0.80
   2 !    8.2   0.0    0.0048       1.5       9      44 ..     622     660 ..     618     679 .. 0.83
   3 ?    1.3   0.0      0.58   1.8e+02     110     158 ..    1159    1208 ..    1140    1216 .. 0.83
   4 ?    4.2   0.0     0.077        24      24      47 ..    1382    1405 ..    1364    1451 .. 0.75
   5 ?    0.3   0.0       1.2   3.7e+02     100     158 ..    1500    1564 ..    1495    1583 .. 0.72
   6 ?    4.7   0.0     0.056        18      23      44 ..    1761    1782 ..    1747    1806 .. 0.83
   7 ?    5.6   0.0     0.029         9     110     162 ..    1834    1887 ..    1827    1896 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllpplsee 52 
                   +ll G +G GKt   + l+  l + s+ 
    CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLGKYSDM 334
                   89***********999998888776654 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0048
  Mg_chelatase   9 eeakrale.iaaaGgHn..lllvGppGsGKtmlakrlps 44 
                    +akr le ia+a +H+  +llvG  G GKt + ++l+ 
    CCE31057.1 622 AHAKRLLEqIAVAIKHEepVLLVGETGIGKTTVVQQLAD 660
                   57888885599999997669*************999875 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.58
  Mg_chelatase  110 LfLDElpefkrkvlevLRePledg.evtisrakakvefparfqlvaamNp 158 
                    ++LDEl    ++vle+L + l+d+ e+ i  +++ v+   +f l a+ Np
    CCE31057.1 1159 IVLDELNLAPTDVLEALNRLLDDNrELLIPETQEVVRPHENFILFATQNP 1208
                    78*******************87527888888888888899999999998 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.077
  Mg_chelatase   24 nlllvGppGsGKtmlakrlpsllp 47  
                     +llvG  G+GKt + + l++ l 
    CCE31057.1 1382 PVLLVGETGCGKTTVVQLLAEALQ 1405
                    589**********98887765553 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 1.2
  Mg_chelatase  100 GeislahnG..vLfLDElpefkrkvlevLRePledgevti.srakakvefp..a.rfqlvaamNp 158 
                    G++  a +G   ++LDE++  + +vle L + le g+  + + +  + +f   a  fq+ a+mNp
    CCE31057.1 1500 GALVEAMRGghFFLLDEISLADDSVLERLNSVLEPGRTLLlAEKGVDNSFVvgAdGFQFFATMNP 1564
                    666777776334568*******************9876551444444555411324888888887 PP

  == domain 6  score: 4.7 bits;  conditional E-value: 0.056
  Mg_chelatase   23 HnlllvGppGsGKtmlakrlps 44  
                      +ll G+pG GKt l ++l++
    CCE31057.1 1761 KPILLEGSPGVGKTTLVAALSQ 1782
                    569*************998875 PP

  == domain 7  score: 5.6 bits;  conditional E-value: 0.029
  Mg_chelatase  110 LfLDElpefkrkvlevLRePled.gevtisrakakvefparfqlvaamNpcpcg 162 
                    ++LDE+   +++vle L   l++ gev is  ++ ++   +f l aa Np   g
    CCE31057.1 1834 VLLDEMNLASQSVLEGLNACLDHrGEVYISELDQVFKRHPDFRLFAAQNPHHQG 1887
                    579******************86389************************8765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.42   1.3e+02      43      71 ..     300     328 ..     285     340 .. 0.81
   2 ?    7.0   0.0     0.014       4.3      30      70 ..     623     661 ..     595     679 .. 0.63
   3 ?    1.0   0.0      0.96     3e+02      20     123 ..    1063    1170 ..    1055    1182 .. 0.65
   4 ?    4.9   0.0     0.062        19      44      73 ..    1377    1405 ..    1346    1443 .. 0.78
   5 !   10.6   0.0    0.0011      0.35      30      87 ..    1743    1800 ..    1725    1844 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.42
   IstB_IS21  43 fiekkenivllGpsGvGKshlaialgvea 71 
                  +++ + i+l G +GvGK+ +   l+++ 
  CCE31057.1 300 LLRDDDPILLHGMAGVGKTSFVHELAMQL 328
                 4788899************9999888875 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.014
   IstB_IS21  30 ldkrkvkeLatlsfiekkenivllGpsGvGKshlaialgve 70 
                   kr ++++a    i+++e ++l+G +G+GK+ +   l+ +
  CCE31057.1 623 HAKRLLEQIAV--AIKHEEPVLLVGETGIGKTTVVQQLADS 661
                 33444444443..489999*************876666544 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.96
   IstB_IS21   20 edidfraarsldkrkvkeLatlsfiekkenivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkra..rrdgkl..ar..alkrllkvd 110 
                  e  d+  ++ ++++ ++ ++++s  +++  +++ Gp+ +GK+ +   l+  + ++ +++     +dL e l +     dgkl  ++   ++++ + +
  CCE31057.1 1063 ERQDYIITPYVERNLLNLVRATS--TRRFPVLIQGPTSAGKTSMIEYLANFTGNKFVRINNHEHTDLQEYLGTYvsGPDGKLrfQEglLVQAMRQGH 1157
                  55566666555555555555544..56677999*********9988888888888888888888888777755311334444114321345555558 PP

   IstB_IS21  111 llilDdlgllpld 123 
                   ++lD+l l p d
  CCE31057.1 1158 WIVLDELNLAPTD 1170
                  8888988888877 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.062
   IstB_IS21   44 iekkenivllGpsGvGKshlaialgveavr 73  
                  ++++e ++l+G +G GK+ +   l+ +  +
  CCE31057.1 1377 LKNNEPVLLVGETGCGKTTVVQLLAEA-LQ 1405
                  68999*************876555443.33 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.0011
   IstB_IS21   30 ldkrkvkeLatlsfiekkenivllGpsGvGKshlaialgveavraglsvlfvrvedLv 87  
                  +  +++++++    ++ ++ i+l G +GvGK+ l +al+++  r  +++     +dL+
  CCE31057.1 1743 APTTRLNAMRVVRALQMQKPILLEGSPGVGKTTLVAALSQACGRPLTRINLSDQTDLM 1800
                  5667788888888899999*******************99887777777766666665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.3        93      29      55 ..     300     326 ..     293     364 .. 0.91
   2 ?    6.8   0.0     0.014       4.4      32      56 ..     637     661 ..     618     666 .. 0.88
   3 !    9.2   0.0    0.0027      0.84      20      56 ..    1367    1403 ..    1352    1419 .. 0.84
   4 !    7.5   0.0     0.009       2.8      30      56 ..    1757    1783 ..    1739    1835 .. 0.88
   5 ?   -1.6   0.0       5.5   1.7e+03      32      63 ..    2069    2098 ..    2049    2192 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.3
      AAA_25  29 llpagelallaGapgtGKttlaldlal 55 
                 ll+ ++ +ll G  g+GKt ++ +la 
  CCE31057.1 300 LLRDDDPILLHGMAGVGKTSFVHELAM 326
                 66778899**************99997 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.014
      AAA_25  32 agelallaGapgtGKttlaldlala 56 
                  +e +ll+G +g GKtt++ +la +
  CCE31057.1 637 HEEPVLLVGETGIGKTTVVQQLADS 661
                 56889*****************965 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0027
      AAA_25   20 pprrwlvkgllpagelallaGapgtGKttlaldlala 56  
                  +++  lv + l  +e +ll+G +g+GKtt++  la a
  CCE31057.1 1367 RRLYVLVSRALKNNEPVLLVGETGCGKTTVVQLLAEA 1403
                  5666788899999****************99888755 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.009
      AAA_25   30 lpagelallaGapgtGKttlaldlala 56  
                  l +++ +ll G pg+GKttl+  l+ a
  CCE31057.1 1757 LQMQKPILLEGSPGVGKTTLVAALSQA 1783
                  5678899*************9887655 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 5.5
      AAA_25   32 agelallaGapgtGKttlaldlalavatGkpw 63  
                   +  ++l  ++g GK+ l+  +a+  ++Gkp+
  CCE31057.1 2069 QNIPCILSSPSGYGKSSLLNYVAA--LSGKPL 2098
                  56678999********98755443..345555 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       4.5   1.4e+03      48      71 ..     307     330 ..     296     346 .. 0.83
   2 ?    6.5   0.0     0.023       7.3      46      74 ..     639     667 ..     621     707 .. 0.82
   3 ?    2.2   0.0      0.46   1.5e+02      47      78 ..    1090    1121 ..    1073    1130 .. 0.80
   4 !   11.9   0.0    0.0005      0.16      47      73 ..    1382    1408 ..    1369    1421 .. 0.77
   5 ?    3.8   0.0      0.15        48      45      71 ..    1760    1786 ..    1743    1800 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 4.5
       Rad17  48 LLisGPsGCgkstvvkvLskelgi 71 
                 +L+ G +G gk+  v++L+ +lg 
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLGK 330
                 6889***************99884 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.023
       Rad17  46 riLLisGPsGCgkstvvkvLskelgiklr 74 
                 + +L+ G +G gk+tvv+ L+  l  kl+
  CCE31057.1 639 EPVLLVGETGIGKTTVVQQLADSLRHKLI 667
                 357889***************99988876 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.46
       Rad17   47 iLLisGPsGCgkstvvkvLskelgiklrewln 78  
                   +Li GP+  gk+ +++ L+   g k+    n
  CCE31057.1 1090 PVLIQGPTSAGKTSMIEYLANFTGNKFVRINN 1121
                  479******************99999876555 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 0.0005
       Rad17   47 iLLisGPsGCgkstvvkvLskelgikl 73  
                   +L+ G +GCgk+tvv+ L+  l  +l
  CCE31057.1 1382 PVLLVGETGCGKTTVVQLLAEALQQEL 1408
                  46788***************9887665 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.15
       Rad17   45 kriLLisGPsGCgkstvvkvLskelgi 71  
                  ++ +L+ G +G gk+t v  Ls+  g 
  CCE31057.1 1760 QKPILLEGSPGVGKTTLVAALSQACGR 1786
                  3467889***************98775 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       3.2     1e+03      24      39 ..     306     321 ..     293     326 .. 0.83
   2 ?    5.3   0.0     0.051        16      18      39 ..     634     655 ..     628     663 .. 0.83
   3 ?    2.0   0.0      0.54   1.7e+02      25      40 ..    1091    1106 ..    1081    1122 .. 0.74
   4 ?    5.4   0.0     0.047        15      22      39 ..    1380    1397 ..    1373    1407 .. 0.83
   5 ?    6.4   0.0     0.023       7.3      22      43 ..    1760    1781 ..    1751    1794 .. 0.82
   6 ?    0.7   0.0       1.4   4.4e+02      25      40 ..    2073    2088 ..    2062    2101 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 3.2
      AAA_29  24 atlltGpsGsGKSTll 39 
                  +ll G  G+GK++++
  CCE31057.1 306 PILLHGMAGVGKTSFV 321
                 689**********987 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.051
      AAA_29  18 eidlkgatlltGpsGsGKSTll 39 
                  i+ ++ +ll+G++G GK+T++
  CCE31057.1 634 AIKHEEPVLLVGETGIGKTTVV 655
                 55656689************97 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.54
      AAA_29   25 tlltGpsGsGKSTllD 40  
                  +l+ Gp+ +GK++++ 
  CCE31057.1 1091 VLIQGPTSAGKTSMIE 1106
                  79***********994 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.047
      AAA_29   22 kgatlltGpsGsGKSTll 39  
                  ++ +ll+G++G GK+T++
  CCE31057.1 1380 NEPVLLVGETGCGKTTVV 1397
                  4468************97 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.023
      AAA_29   22 kgatlltGpsGsGKSTllDAiq 43  
                  +  +ll G  G+GK+Tl+ A++
  CCE31057.1 1760 QKPILLEGSPGVGKTTLVAALS 1781
                  44689*************8876 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 1.4
      AAA_29   25 tlltGpsGsGKSTllD 40  
                  ++l+ psG GKS+ll 
  CCE31057.1 2073 CILSSPSGYGKSSLLN 2088
                  567889********95 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.13        41      55      79 ..     306     330 ..     287     348 .. 0.80
   2 ?    6.0   0.0     0.019       5.9      54      84 ..     639     669 ..     623     690 .. 0.80
   3 ?   -2.0   0.0       4.9   1.5e+03      55      93 ..    1090    1128 ..    1072    1131 .. 0.77
   4 !    9.6   0.0    0.0015      0.47      54      89 ..    1381    1415 ..    1371    1430 .. 0.82
   5 ?    4.6   0.0      0.05        16      54      83 ..    1761    1790 ..    1746    1804 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.13
      DUF815  55 nvLLwGarGtGKSslvkallneyae 79 
                  +LL G  G+GK s v+ l  ++ +
  CCE31057.1 306 PILLHGMAGVGKTSFVHELAMQLGK 330
                 49***************99887655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.019
      DUF815  54 nnvLLwGarGtGKSslvkallneyaeegLrl 84 
                 + vLL+G+ G GK ++v+ l  +++++ +++
  CCE31057.1 639 EPVLLVGETGIGKTTVVQQLADSLRHKLIAV 669
                 569*****************99998875543 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.9
      DUF815   55 nvLLwGarGtGKSslvkallneyaeegLrlievekedlk 93  
                   vL+ G   +GK s++  l n + ++ +r+ + e++dl+
  CCE31057.1 1090 PVLIQGPTSAGKTSMIEYLANFTGNKFVRINNHEHTDLQ 1128
                  4899***************99999999988777776665 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.0015
      DUF815   54 nnvLLwGarGtGKSslvkallneyaeegLrlievek 89  
                  + vLL+G+ G+GK ++v+ l +e+ +++L++++ ++
  CCE31057.1 1381 EPVLLVGETGCGKTTVVQLL-AEALQQELHIVNAHQ 1415
                  459***********999865.556677899998776 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.05
      DUF815   54 nnvLLwGarGtGKSslvkallneyaeegLr 83  
                  + +LL G+ G+GK +lv al +++ +   r
  CCE31057.1 1761 KPILLEGSPGVGKTTLVAALSQACGRPLTR 1790
                  569**************9998877655444 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.086        27       4      29 ..     307     332 ..     305     339 .. 0.85
   2 !   10.3   0.0    0.0013      0.41       4      29 ..     641     666 ..     638     673 .. 0.86
   3 !    8.8   0.0    0.0037       1.2       4      28 ..    1383    1407 ..    1380    1413 .. 0.89
   4 ?    4.1   0.0       0.1        32       4      24 ..    1763    1783 ..    1760    1793 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.086
                 EEEEESTTSSHHHHHHHHHHHHHHTT CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkeg 29 
                 ill G+ G+GKT+ +  La +l k  
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLGKYS 332
                 899****************9887765 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0013
                 EEEEESTTSSHHHHHHHHHHHHHHTT CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkeg 29 
                 +llvG +G+GKTt + +La+ l+++ 
  CCE31057.1 641 VLLVGETGIGKTTVVQQLADSLRHKL 666
                 79*****************9998875 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0037
                  EEEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54    4 illvGlqGaGKTttlaKLaallkke 28  
                  +llvG +G GKTt +  La+ l++e
  CCE31057.1 1383 VLLVGETGCGKTTVVQLLAEALQQE 1407
                  79******************99987 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.1
                  EEEEESTTSSHHHHHHHHHHH CS
       SRP54    4 illvGlqGaGKTttlaKLaal 24  
                  ill G  G+GKTt +a L++ 
  CCE31057.1 1763 ILLEGSPGVGKTTLVAALSQA 1783
                  8999************99876 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       6.2     2e+03      22      48 ..     302     328 ..     278     337 .. 0.79
   2 !   10.7   0.0    0.0012      0.39       9      51 ..     625     665 ..     606     672 .. 0.82
   3 ?   -0.4   0.0       3.2     1e+03       9      41 ..    1074    1105 ..    1067    1118 .. 0.77
   4 !   10.4   0.0    0.0015      0.48      21      54 ..    1368    1410 ..    1317    1415 .. 0.77
   5 ?    1.0   0.0       1.2   3.8e+02      22      47 ..    1758    1783 ..    1740    1788 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 6.2
                 .TTSEEEEEESTTSTHHHHHHHHHHHH CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierl 48 
                 ++d  +l++   G+GKT    +l+ +l
  CCE31057.1 302 RDDDPILLHGMAGVGKTSFVHELAMQL 328
                 688899***********9988887776 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0012
                 HHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII   9 eeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkk 51 
                 ++ +e+++ ++  k+++ +l++ +TG GKT v  +l+++l++k
  CCE31057.1 625 KRLLEQIAVAI--KHEEPVLLVGETGIGKTTVVQQLADSLRHK 665
                 44455555555..79***********************99987 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 3.2
                  HHHHHHHT......TTSEEEEEESTTSTHHHHH CS
      ResIII    9 eeaienlleklkskrdkrglikmaTGtGKTlva 41  
                  e+ + nl+ + + +r+  +li+ +T +GKT ++
  CCE31057.1 1074 ERNLLNLVRATS-TRRFPVLIQGPTSAGKTSMI 1105
                  555666666665.8999*************886 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.0015
                  ...........TTSEEEEEESTTSTHHHHHHHHHHHH-S.... CS
      ResIII   21 s.........krdkrglikmaTGtGKTlvaaklierllkkgke 54  
                            k+++ +l++ +TG+GKT v   l+e+l+++ ++
  CCE31057.1 1368 RlyvlvsralKNNEPVLLVGETGCGKTTVVQLLAEALQQELHI 1410
                  04444444558999**********************9998775 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 1.2
                  .TTSEEEEEESTTSTHHHHHHHHHHH CS
      ResIII   22 krdkrglikmaTGtGKTlvaaklier 47  
                  + +k +l++   G+GKT + a+l ++
  CCE31057.1 1758 QMQKPILLEGSPGVGKTTLVAALSQA 1783
                  57899**************9998765 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.94     3e+02       4      37 ..     307     340 ..     304     344 .. 0.82
   2 !    7.9   0.0    0.0079       2.5       4      23 ..     641     660 ..     638     677 .. 0.85
   3 !   10.3   0.0    0.0014      0.43       4      23 ..    1383    1402 ..    1380    1422 .. 0.79
   4 ?    3.2   0.0      0.21        66       2      23 ..    1761    1782 ..    1759    1792 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.94
   PduV-EutP   4 illiGkvgsGKttLtqalkgeelkYkktqaiefs 37 
                 ill G  g+GKt+  ++l  +  kY+   +++++
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLGKYSDMVTLHLN 340
                 8999**************9998888776666555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0079
   PduV-EutP   4 illiGkvgsGKttLtqalkg 23 
                 +ll+G++g GKtt+ q+l +
  CCE31057.1 641 VLLVGETGIGKTTVVQQLAD 660
                 89***************987 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0014
   PduV-EutP    4 illiGkvgsGKttLtqalkg 23  
                  +ll+G++g+GKtt+ q l +
  CCE31057.1 1383 VLLVGETGCGKTTVVQLLAE 1402
                  89*************99876 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.21
   PduV-EutP    2 kkilliGkvgsGKttLtqalkg 23  
                  k ill G+ g+GKttL  al++
  CCE31057.1 1761 KPILLEGSPGVGKTTLVAALSQ 1782
                  669999************9987 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0         1   3.3e+02      10      35 ..     304     329 ..     296     340 .. 0.81
   2 ?    7.5   0.1     0.015       4.7       3      35 ..     631     663 ..     629     671 .. 0.82
   3 !    8.9   0.0    0.0058       1.8       9      39 ..    1379    1409 ..    1373    1537 .. 0.92
   4 ?    7.5   0.0     0.015       4.7       8      32 ..    1758    1782 ..    1751    1791 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 1
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallv 35 
                 ++++l+ + +G GKT  +++    l 
  CCE31057.1 304 DDPILLHGMAGVGKTSFVHELAMQLG 329
                 6799************9988776665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.015
      AAA_19   3 eavealkekvllvtaGpGtGKTrvlkhivallv 35 
                  av+  +e+++l+++  G GKT+v+++    l 
  CCE31057.1 631 IAVAIKHEEPVLLVGETGIGKTTVVQQLADSLR 663
                 46666778999**************99877665 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0058
      AAA_19    9 kekvllvtaGpGtGKTrvlkhivallvelgg 39  
                  +++++l+++  G+GKT+v++   + l+++ +
  CCE31057.1 1379 NNEPVLLVGETGCGKTTVVQLLAEALQQELH 1409
                  6889******************999998865 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.015
      AAA_19    8 lkekvllvtaGpGtGKTrvlkhiva 32  
                    +k++l+ + pG GKT+++ +  +
  CCE31057.1 1758 QMQKPILLEGSPGVGKTTLVAALSQ 1782
                  56899*************9987655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.27        84      19      51 ..     307     339 ..     297     345 .. 0.91
   2 ?    6.7   0.0     0.013         4      13      48 ..     637     670 ..     624     675 .. 0.71
   3 ?    2.4   0.0      0.27        83      19      51 ..    1091    1121 ..    1079    1138 .. 0.83
   4 !    9.9   0.0    0.0013      0.41      19      47 ..    1383    1411 ..    1374    1416 .. 0.86
   5 ?    5.0   0.0      0.04        13      17      44 ..    1761    1786 ..    1749    1797 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.27
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldp 51 
                 ill G  G GK++  ++l+ +l++++++v+l  
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLGKYSDMVTLHL 339
                 7999*************************9875 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.013
  Zeta_toxin  13 qerPklillgGqpGAGKselaellkdelerqgnvvr 48 
                  e+P  +ll+G +G GK+++ + l+d+l+++  +v 
  CCE31057.1 637 HEEP--VLLVGETGIGKTTVVQQLADSLRHKLIAVN 670
                 4444..789******************954444444 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.27
  Zeta_toxin   19 illgGqpGAGKselaellkdelerqgnvvrldp 51  
                  +l+ G + AGK++++e+l++ +  ++++vr++ 
  CCE31057.1 1091 VLIQGPTSAGKTSMIEYLANFT--GNKFVRINN 1121
                  7888***************998..999999986 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.0013
  Zeta_toxin   19 illgGqpGAGKselaellkdelerqgnvv 47  
                  +ll+G +G+GK+++ +ll+++l+++  +v
  CCE31057.1 1383 VLLVGETGCGKTTVVQLLAEALQQELHIV 1411
                  79********************8766665 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.04
  Zeta_toxin   17 klillgGqpGAGKselaellkdelerqg 44  
                  k ill G+pG GK++l ++l ++   ++
  CCE31057.1 1761 KPILLEGSPGVGKTTLVAALSQAC--GR 1786
                  4589***************99987..44 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.23        73       1      32 [.     307     336 ..     307     376 .. 0.71
   2 ?    1.8   0.0      0.57   1.8e+02       5      25 ..     645     665 ..     641     676 .. 0.85
   3 ?    2.8   0.0      0.29        92       2      31 ..    1092    1121 ..    1091    1155 .. 0.81
   4 ?    5.0   0.0      0.06        19       5      24 ..    1387    1406 ..    1383    1424 .. 0.79
   5 ?    6.5   0.0     0.021       6.6       1      24 [.    1763    1786 ..    1763    1798 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.23
                 EEEEESTTSSHHHHHHHHHCCSTCEEEE-HHH CS
         dNK   1 ivveGnIgaGKstlvklLskklgvkvfeEpvd 32 
                 i + G  g+GK+++v+ L+ +lg   ++++v 
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLG--KYSDMVT 336
                 56789**************9996..3444444 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.57
                 ESTTSSHHHHHHHHHCCSTCE CS
         dNK   5 GnIgaGKstlvklLskklgvk 25 
                 G  g GK+t+v++L++ l  k
  CCE31057.1 645 GETGIGKTTVVQQLADSLRHK 665
                 889************998655 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.29
                  EEEESTTSSHHHHHHHHHCCSTCEEEE-HH CS
         dNK    2 vveGnIgaGKstlvklLskklgvkvfeEpv 31  
                   ++G+ +aGK+++++ L++ +g k+++  +
  CCE31057.1 1092 LIQGPTSAGKTSMIEYLANFTGNKFVRINN 1121
                  599****************99977776444 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.06
                  ESTTSSHHHHHHHHHCCSTC CS
         dNK    5 GnIgaGKstlvklLskklgv 24  
                  G  g+GK+t+v+lL+++l+ 
  CCE31057.1 1387 GETGCGKTTVVQLLAEALQQ 1406
                  899************99963 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.021
                  EEEEESTTSSHHHHHHHHHCCSTC CS
         dNK    1 ivveGnIgaGKstlvklLskklgv 24  
                  i +eG  g+GK+tlv  Ls+++g 
  CCE31057.1 1763 ILLEGSPGVGKTTLVAALSQACGR 1786
                  679*****************9984 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.9   5.9e+02       2      28 ..     307     333 ..     306     349 .. 0.80
   2 ?    3.3   0.0      0.28        87       2      22 ..     641     661 ..     640     682 .. 0.82
   3 ?    4.1   0.0      0.15        46       2      32 ..    1091    1125 ..    1090    1143 .. 0.76
   4 ?    3.6   0.0      0.21        67       2      23 ..    1383    1407 ..    1382    1431 .. 0.73
   5 ?    4.7   0.0     0.095        30       3      22 ..    1764    1783 ..    1762    1799 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 1.9
                 EEEEESTTSSHHHHHHHHHTSTEEESS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsd 28 
                 +++ G+  vGK++++  l  +  + sd
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQLGKYSD 333
                 6788************99887666655 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.28
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 v++vG +  GK+t++++l ++
  CCE31057.1 641 VLLVGETGIGKTTVVQQLADS 661
                 789***************986 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.15
                  EEEEESTTSSHHHHHHHHHT...S.TEEESSSTTS CS
    MMR_HSR1    2 vaivGrpNvGKStLinaltg...e.kaivsdkpgt 32  
                  v+i G + +GK+++i  l +   +  ++++++  t
  CCE31057.1 1091 VLIQGPTSAGKTSMIEYLANftgNkFVRINNHEHT 1125
                  7899**************87443324666666655 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.21
                  EEEEESTTSSHHHHHHHHHTS...T CS
    MMR_HSR1    2 vaivGrpNvGKStLinaltge...k 23  
                  v++vG +  GK+t+++ l ++   +
  CCE31057.1 1383 VLLVGETGCGKTTVVQLLAEAlqqE 1407
                  789*************999854322 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.095
                  EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1    3 aivGrpNvGKStLinaltge 22  
                  ++ G p vGK+tL+ al+++
  CCE31057.1 1764 LLEGSPGVGKTTLVAALSQA 1783
                  6779*************875 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.32     1e+02       2      22 ..     307     327 ..     306     352 .. 0.80
   2 ?    7.3   0.0     0.016       5.2       2      22 ..     641     661 ..     640     677 .. 0.86
   3 ?    0.6   0.0       2.1   6.5e+02       3      21 ..    1092    1110 ..    1091    1125 .. 0.79
   4 ?    4.3   0.0      0.14        45       2      21 ..    1383    1402 ..    1382    1423 .. 0.84
   5 ?    2.1   0.0      0.67   2.1e+02       2      21 ..    1763    1782 ..    1762    1790 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.32
                 EEEESSTTSSHHHHHHCHCT- CS
         Roc   2 vvlvGdsgvGKtsllkrfved 22 
                 ++l G +gvGKts+++++  +
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQ 327
                 678899**********99765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.016
                 EEEESSTTSSHHHHHHCHCT- CS
         Roc   2 vvlvGdsgvGKtsllkrfved 22 
                 v+lvG++g+GKt+ ++++ ++
  CCE31057.1 641 VLLVGETGIGKTTVVQQLADS 661
                 79***************9875 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 2.1
                  EEESSTTSSHHHHHHCHCT CS
         Roc    3 vlvGdsgvGKtsllkrfve 21  
                  ++ G +++GKts+++ + +
  CCE31057.1 1092 LIQGPTSAGKTSMIEYLAN 1110
                  6779*********997765 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.14
                  EEEESSTTSSHHHHHHCHCT CS
         Roc    2 vvlvGdsgvGKtsllkrfve 21  
                  v+lvG++g GKt+ ++ + e
  CCE31057.1 1383 VLLVGETGCGKTTVVQLLAE 1402
                  79***********9987765 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.67
                  EEEESSTTSSHHHHHHCHCT CS
         Roc    2 vvlvGdsgvGKtsllkrfve 21  
                  ++l G  gvGKt+l+  + +
  CCE31057.1 1763 ILLEGSPGVGKTTLVAALSQ 1782
                  56779**********98865 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0067       2.1      10      40 ..     299     324 ..     290     345 .. 0.74
   2 ?    4.8   0.0     0.044        14      23      43 ..     641     661 ..     622     680 .. 0.82
   3 ?    2.8   0.0      0.17        54      23      40 ..    1383    1400 ..    1370    1411 .. 0.79
   4 ?    2.6   0.0       0.2        63      23      39 ..    1763    1779 ..    1751    1784 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0067
                 HHHHCTTTSCSEEEEEEESTTSSHHHHHHHH CS
      NB-ARC  10 ekLlekdelqslvvalvGmgGvGKttlakqi 40 
                   L   d+     + l+Gm+GvGKt  +++ 
  CCE31057.1 299 TLLR-DDD----PILLHGMAGVGKTSFVHEL 324
                 4443.333....368**********987765 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.044
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 v lvG  G+GKtt+++q   +
  CCE31057.1 641 VLLVGETGIGKTTVVQQLADS 661
                 689*************98765 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.17
                  EEEEESTTSSHHHHHHHH CS
      NB-ARC   23 valvGmgGvGKttlakqi 40  
                  v lvG  G+GKtt+++  
  CCE31057.1 1383 VLLVGETGCGKTTVVQLL 1400
                  689**********98755 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.2
                  EEEEESTTSSHHHHHHH CS
      NB-ARC   23 valvGmgGvGKttlakq 39  
                  + l G +GvGKttl++ 
  CCE31057.1 1763 ILLEGSPGVGKTTLVAA 1779
                  6799**********975 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       8.1   2.6e+03      22      57 ..     293     326 ..     287     334 .. 0.75
   2 !    7.4   0.0    0.0084       2.6      23      57 ..     628     660 ..     614     677 .. 0.73
   3 ?    3.2   0.0      0.16        50      22      57 ..    1076    1110 ..    1065    1127 .. 0.78
   4 ?    6.4   0.0     0.017       5.5      19      57 ..    1365    1402 ..    1361    1458 .. 0.82
   5 ?   -1.6   0.0       4.9   1.5e+03      31      54 ..    1755    1779 ..    1745    1787 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 8.1
        TniB  22 rLeeLleypkrkrmpnlllvGdsnnGKtmivekFar 57 
                 ++e+L +  + ++   +ll+G   +GKt+ v++ a 
  CCE31057.1 293 NMERLATLLRDDD--PILLHGMAGVGKTSFVHELAM 326
                 5666666666665..689***********9998765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0084
        TniB  23 LeeLleypkrkrmpnlllvGdsnnGKtmivekFar 57 
                 Le++  + k++  + +llvG++ +GKt++v++ a+
  CCE31057.1 628 LEQIAVAIKHE--EPVLLVGETGIGKTTVVQQLAD 660
                 34444444433..4689**************9876 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.16
        TniB   22 rLeeLleypkrkrmpnlllvGdsnnGKtmivekFar 57  
                  +L +L+++ +  r   +l+ G++  GKt+++e  a+
  CCE31057.1 1076 NLLNLVRATSTRRF-PVLIQGPTSAGKTSMIEYLAN 1110
                  56677777766665.589************997665 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.017
        TniB   19 ilerLeeLleypkrkrmpnlllvGdsnnGKtmivekFar 57  
                  +++rL  L++++ ++  + +llvG++ +GKt++v+  a+
  CCE31057.1 1365 AMRRLYVLVSRALKNN-EPVLLVGETGCGKTTVVQLLAE 1402
                  6777777887777776.67999***********997665 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 4.9
        TniB   31 krkrm.pnlllvGdsnnGKtmivek 54  
                  ++ +m + +ll G + +GKt++v  
  CCE31057.1 1755 RALQMqKPILLEGSPGVGKTTLVAA 1779
                  455563568999*********9975 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.078        24       3      17 ..     311     325 ..     309     338 .. 0.85
   2 ?    4.4   0.0      0.09        28       2      32 ..     644     671 ..     643     676 .. 0.89
   3 ?   -2.0   0.0       8.1   2.5e+03       2      20 ..    1094    1112 ..    1093    1118 .. 0.86
   4 ?    6.8   0.0     0.017       5.3       2      31 ..    1386    1412 ..    1385    1418 .. 0.93
   5 ?    6.6   0.0     0.018       5.7       3      32 ..    1767    1793 ..    1765    1799 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.078
  ATP_bind_1   3 GpaGsGKttfvgals 17 
                 G+aG+GKt+fv++l+
  CCE31057.1 311 GMAGVGKTSFVHELA 325
                 9**********9986 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.09
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrsvavvNL 32 
                 vG  G GKtt v++l++ l+ +   +  vNL
  CCE31057.1 644 VGETGIGKTTVVQQLADSLRHK---LIAVNL 671
                 899*************999988...888887 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 8.1
  ATP_bind_1    2 vGpaGsGKttfvgalseil 20  
                   Gp ++GKt++++ l++++
  CCE31057.1 1094 QGPTSAGKTSMIEYLANFT 1112
                  69**********9998876 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.017
  ATP_bind_1    2 vGpaGsGKttfvgalseilelrgrsvavvN 31  
                  vG  G GKtt v+ l+e l+++   +++vN
  CCE31057.1 1386 VGETGCGKTTVVQLLAEALQQE---LHIVN 1412
                  899*****************99...99999 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.018
  ATP_bind_1    3 GpaGsGKttfvgalseilelrgrsvavvNL 32  
                  G +G+GKtt+v als+ +    r++  +NL
  CCE31057.1 1767 GSPGVGKTTLVAALSQACG---RPLTRINL 1793
                  899************9874...45666666 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.26        82       5      22 ..     307     324 ..     305     340 .. 0.89
   2 ?    6.3   0.3     0.022         7       5      22 ..     641     658 ..     638     785 .. 0.89
   3 ?   -1.8   0.0       6.9   2.2e+03       5      22 ..    1091    1108 ..    1090    1121 .. 0.78
   4 ?    2.9   0.0      0.25        80       5      22 ..    1383    1400 ..    1379    1468 .. 0.82
   5 ?    4.9   0.0     0.059        18       3      22 ..    1761    1780 ..    1759    1790 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.26
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 il+ G +g+GKT+++ el
  CCE31057.1 307 ILLHGMAGVGKTSFVHEL 324
                 799***********9998 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.022
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l++G+ giGKTt++ +l
  CCE31057.1 641 VLLVGETGIGKTTVVQQL 658
                 789************999 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 6.9
      AAA_24    5 iliyGpsgiGKTtlakel 22  
                  +li Gp  +GKT+++  l
  CCE31057.1 1091 VLIQGPTSAGKTSMIEYL 1108
                  6899**********9988 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.25
      AAA_24    5 iliyGpsgiGKTtlakel 22  
                  +l++G+ g GKTt++  l
  CCE31057.1 1383 VLLVGETGCGKTTVVQLL 1400
                  799**********99887 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.059
      AAA_24    3 lkiliyGpsgiGKTtlakel 22  
                  + il+ G++g+GKTtl++ l
  CCE31057.1 1761 KPILLEGSPGVGKTTLVAAL 1780
                  568999**********9987 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0         3   9.4e+02       7      25 ..     312     330 ..     307     338 .. 0.82
   2 ?    1.4   0.0      0.96     3e+02       6      25 ..     645     664 ..     641     710 .. 0.90
   3 ?    4.1   0.0      0.15        47       6      29 ..    1387    1409 ..    1383    1413 .. 0.85
   4 ?    6.5   0.0     0.025         8       7      34 ..    1768    1795 ..    1763    1973 .. 0.90
   5 ?    1.8   0.0      0.73   2.3e+02       3      55 ..    2074    2171 ..    2073    2351 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 3
                 STTSSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
        CbiA   7 kGGvGKTtlaanLaralar 25 
                   GvGKT+++  La  l +
  CCE31057.1 312 MAGVGKTSFVHELAMQLGK 330
                 56************99877 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.96
                 SSTTSSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLaralar 25 
                 +  G GKTt++  La +l  
  CCE31057.1 645 GETGIGKTTVVQQLADSLRH 664
                 6789***********99976 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.15
                  SSTTSSHHHHHHHHHHHHHHTT-- CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA    6 tkGGvGKTtlaanLaralarrglr 29  
                  +  G GKTt++  La al++ +l+
  CCE31057.1 1387 GETGCGKTTVVQLLAEALQQ-ELH 1409
                  678***************99.655 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.025
                  STTSSHHHHHHHHHHHHHHTT--EEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA    7 kGGvGKTtlaanLaralarrglrVllvD 34  
                  + GvGKTtl+a+L +a  r   r+ l D
  CCE31057.1 1768 SPGVGKTTLVAALSQACGRPLTRINLSD 1795
                  569************9888666665555 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.73
                  EEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA    3 iastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54  
                  i s  +G GK++l+   a al+ + l V++  aD ++  l       +  e+                                             
  CCE31057.1 2074 ILSSPSGYGKSSLLNYVA-ALSGKPLAVFPMNADIDTMDLV------GGFEQadplrevnaalielrgylqnsvmslvpssapdgvlkllhlldayn 2163
                  78889******9875555.57777************54433......22222234566677777777777777777777777776666666666666 PP

                  .......C CS
                  .......x RF
        CbiA   55 .......d 55  
                         +
  CCE31057.1 2164 gdhghlaN 2171
                  65553331 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.14        43       6      30 ..     648     672 ..     645     714 .. 0.86
   2 !    9.3   0.0    0.0026      0.82       6      44 ..    1390    1425 ..    1387    1439 .. 0.84
   3 ?    0.6   0.0       1.2   3.8e+02       1      20 [.    1765    1784 ..    1765    1792 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.14
                      TSSHHHHHHHHHHHHHHTTE.EEEE CS
  Thymidylate_kin   6 GaGKttqaellkerlkeegikvvlt 30 
                      G GKtt+++ l++ l+ + i+v l+
       CCE31057.1 648 GIGKTTVVQQLADSLRHKLIAVNLS 672
                      99***************99986554 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0026
                       TSSHHHHHHHHHHHHHHTTE.EEEESSSTTSHHHHHHHH CS
  Thymidylate_kin    6 GaGKttqaellkerlkeegikvvltrepggteiGekire 44  
                       G GKtt+++ll+e+l++e +   +    ++te+G++i +
       CCE31057.1 1390 GCGKTTVVQLLAEALQQELH---IVNAHQNTETGDLIGS 1425
                       89****************95...6677788899998865 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 1.2
                       EEESTTSSHHHHHHHHHHHH CS
  Thymidylate_kin    1 iEGlDGaGKttqaellkerl 20  
                       +EG  G+GKtt +++l +++
       CCE31057.1 1765 LEGSPGVGKTTLVAALSQAC 1784
                       69************999876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       5.8   1.8e+03       2      22 ..     307     327 ..     306     338 .. 0.82
   2 ?    3.4   0.0      0.25        79       2      22 ..     641     661 ..     640     674 .. 0.83
   3 ?    6.0   0.0     0.041        13       2      27 ..    1091    1117 ..    1090    1158 .. 0.67
   4 ?    5.8   0.0     0.047        15       2      22 ..    1383    1403 ..    1382    1442 .. 0.78
   5 !   10.4   0.0    0.0019      0.59       2      25 ..    1763    1787 ..    1762    1792 .. 0.87
   6 ?   -1.6   0.0       8.9   2.8e+03      86     142 ..    3493    3551 ..    3488    3555 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 5.8
      AAA_28   2 ivitGgestGKTtlleaLaar 22 
                 i + G  + GKT+ + +La +
  CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQ 327
                 6788999***********965 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.25
      AAA_28   2 ivitGgestGKTtlleaLaar 22 
                 + ++G  + GKTt++++La+ 
  CCE31057.1 641 VLLVGETGIGKTTVVQQLADS 661
                 6789999***********954 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.041
      AAA_28    2 ivitGgestGKTtlleaLaar.gypvv 27  
                  + i G+ s+GKT+++e La+  g + v
  CCE31057.1 1091 VLIQGPTSAGKTSMIEYLANFtGNKFV 1117
                  6799***************53343333 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.047
      AAA_28    2 ivitGgestGKTtlleaLaar 22  
                  + ++G  ++GKTt+++ La+ 
  CCE31057.1 1383 VLLVGETGCGKTTVVQLLAEA 1403
                  6789999************75 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.0019
      AAA_28    2 ivitGgestGKTtlleaLaar.gyp 25  
                  i + G ++ GKTtl++aL++  g p
  CCE31057.1 1763 ILLEGSPGVGKTTLVAALSQAcGRP 1787
                  7899***************876765 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 8.9
      AAA_28   86 laYarayggeaeaeleaaar...ekrydlvfllppapeidddgeRredleereaiderlr 142 
                  + Y+ +y+++ae+++ +  r    k+++ v+l++ ++++  ++ R+   +  +++ +++r
  CCE31057.1 3493 VQYYSRYEKTAEEAIHK-GRvpiDKKMKDVLLMASWKDTNINALRESARKSHQKLFRLIR 3551
                  55888888885555554.44456889***********99999999887777777766665 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.8e-05    0.0058       1      95 [.    4771    4866 ..    4771    4872 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.8e-05
       VWA_2    1 lvfvlDtSgSmrngdygptrleaakd.aveallkslpgdrvglvtfsdgpevliplt...kdkakilnalrnleakgggtnlaaaLqlarkalkkrr 93  
                  +++++D S+Sm+++  g  rl+ +    v++ l+ l   +vg+v f+ ++ +   lt    + ++  + l++    ++ t++a  +++  +++++ r
  CCE31057.1 4771 ILLCVDDSKSMGESSSG--RLALQSLvMVSRSLAMLEAGQVGVVGFGRDVFTAHELTepfASADAGARVLQKFSFAQDSTDVALLIRQTLDMFRRAR 4865
                  689**********9533..44444331334444555788*********98666666622266666666666666669****************9887 PP

       VWA_2   94 kg 95  
                   +
  CCE31057.1 4866 -Q 4866
                  .2 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.17        54       1      21 [.     307     327 ..     307     350 .. 0.80
   2 ?   -0.8   0.0       3.2     1e+03       7      23 ..     647     664 ..     642     679 .. 0.74
   3 ?   -0.7   0.0         3   9.4e+02       9      80 ..    1099    1173 ..    1091    1179 .. 0.67
   4 ?    3.8   0.0      0.13        42       5      25 ..    1387    1411 ..    1383    1442 .. 0.75
   5 ?    3.0   0.0      0.23        73       2      28 ..    1764    1791 ..    1763    1852 .. 0.56

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.17
  Viral_helicase1   1 ivvhGvpGcGKStlirkllrt 21 
                      i+ hG++G GK++ + +l+ +
       CCE31057.1 307 ILLHGMAGVGKTSFVHELAMQ 327
                      678**********99999865 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 3.2
  Viral_helicase1   7 pGcGKStlirkllrts.l 23 
                       G GK+t++++l+++  +
       CCE31057.1 647 TGIGKTTVVQQLADSLrH 664
                      688**********98442 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 3
  Viral_helicase1    9 cGKStlirkllrts..liltvnrptaelltegk...pklpnlsvrtvdsflmalvkstkgkililDEylllhaGyil 80  
                       +GK+++i  l++      +++n+    +l e +      p+ + r  + +l +++   +g+ ++lDE  l+++ +++
       CCE31057.1 1099 AGKTSMIEYLANFTgnKFVRINNHEHTDLQEYLgtyVSGPDGKLRFQEGLLVQAM--RQGHWIVLDELNLAPTDVLE 1173
                       8************998777777777888888889553333333333333333333..46999999999998854444 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.13
  Viral_helicase1    5 GvpGcGKStlirkllrts....lil 25  
                       G  GcGK+t+++ l++      +i+
       CCE31057.1 1387 GETGCGKTTVVQLLAEALqqelHIV 1411
                       567******9998887745444333 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.23
  Viral_helicase1    2 vvhGvpGcGKStlirkllrts...liltvn 28  
                       +  G pG GK+tl+  l + +   l  t +
       CCE31057.1 1764 LLEGSPGVGKTTLVAALSQACgrpL--TRI 1791
                       67899*******9999999988541..332 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.5   4.7e+02      22      44 ..     306     328 ..     294     353 .. 0.79
   2 ?    0.5   0.0      0.88   2.8e+02      22      47 ..     640     665 ..     623     782 .. 0.79
   3 ?   -1.8   0.0       4.4   1.4e+03       8      41 ..    1077    1109 ..    1073    1122 .. 0.83
   4 !    7.2   0.0    0.0082       2.6      11      60 ..    1371    1415 ..    1366    1423 .. 0.88
   5 ?    0.3   0.0         1   3.2e+02      20      42 ..    1760    1782 ..    1750    1834 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.5
  KAP_NTPase  22 vvgLygkWGsGKssllnkledel 44 
                 ++ L g  G+GK+s++ +l  +l
  CCE31057.1 306 PILLHGMAGVGKTSFVHELAMQL 328
                 68899999********9998766 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.88
  KAP_NTPase  22 vvgLygkWGsGKssllnkledelkef 47 
                 +v L g+ G GK+++++ l d+l+++
  CCE31057.1 640 PVLLVGETGIGKTTVVQQLADSLRHK 665
                 68899999*************99987 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 4.4
  KAP_NTPase    8 ladilseptlatpivvgLygkWGsGKssllnkle 41  
                  l +++   t+++ ++v ++g+  +GK+s+++ l 
  CCE31057.1 1077 LLNLVR-ATSTRRFPVLIQGPTSAGKTSMIEYLA 1109
                  566666.5569*******************9876 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0082
  KAP_NTPase   11 ilseptlatpivvgLygkWGsGKssllnkledelkefakpvrflfaefna 60  
                  +l++ +l++  +v L g+ G+GK++++++l ++l+++     +++++++ 
  CCE31057.1 1371 VLVSRALKNNEPVLLVGETGCGKTTVVQLLAEALQQE-----LHIVNAHQ 1415
                  778888999999************************9.....88888775 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 1
  KAP_NTPase   20 pivvgLygkWGsGKssllnkled 42  
                  + ++ L+g  G+GK++l++ l +
  CCE31057.1 1760 QKPILLEGSPGVGKTTLVAALSQ 1782
                  55799*************99976 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.3   7.2e+02      34      56 ..     309     331 ..     294     337 .. 0.85
   2 !    7.5   0.0    0.0056       1.8      12      78 ..     621     682 ..     610     687 .. 0.82
   3 ?   -1.1   0.0       2.4   7.5e+02      31      57 ..    1382    1408 ..    1363    1413 .. 0.78
   4 ?    3.2   0.0      0.12        36      33      51 ..    1764    1782 ..    1749    1792 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.3
                 EEE-TTSSHHHHHHHHHHHHHCT CS
        MeaB  34 ltGvPGaGkstlvealglelrrr 56 
                 l G+ G+Gk  +v++l+++l + 
  CCE31057.1 309 LHGMAGVGKTSFVHELAMQLGKY 331
                 789***************99765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0056
                 SHHHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE------------- CS
        MeaB  12 rpeakellerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavDPsspftGGsilG 78 
                 +++ak+lle++     + + v l G  G Gk t+v++l+ +lr++     ++av+ s + + G +lG
  CCE31057.1 621 TAHAKRLLEQIAVAIKHEEPVLLVGETGIGKTTVVQQLADSLRHK-----LIAVNLSQQSEVGDLLG 682
                 4499***********************************999875.....56666666666666665 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.4
                  EEEEEE-TTSSHHHHHHHHHHHHHCTT CS
        MeaB   31 vvGltGvPGaGkstlvealglelrrrG 57  
                   v l G  G Gk t+v+ l++ l+++ 
  CCE31057.1 1382 PVLLVGETGCGKTTVVQLLAEALQQEL 1408
                  56788999***********99998875 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.12
                  EEEE-TTSSHHHHHHHHHH CS
        MeaB   33 GltGvPGaGkstlvealgl 51  
                   l G+PG+Gk tlv al +
  CCE31057.1 1764 LLEGSPGVGKTTLVAALSQ 1782
                  578************9976 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.9     9e+02       4      22 ..     308     327 ..     306     356 .. 0.73
   2 ?    4.0   0.1      0.11        33       4      38 ..     642     676 ..     640     679 .. 0.84
   3 ?   -1.3   0.0       4.5   1.4e+03       4      22 ..    1092    1110 ..    1090    1125 .. 0.79
   4 ?    1.8   0.0      0.49   1.6e+02       4      27 ..    1384    1406 ..    1382    1433 .. 0.75
   5 ?    4.0   0.1       0.1        32       4      21 ..    1764    1781 ..    1762    1789 .. 0.85
   6 ?   -0.8   0.0       3.1   9.7e+02       4      28 ..    2074    2097 ..    2072    2106 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.9
                 EEEESTTCCHHHHHHHHH.C CS
        cobW   4 vltGflGsGKTtLlnhll.e 22 
                 +l G  G GKT+++ +l  +
  CCE31057.1 308 LLHGMAGVGKTSFVHELAmQ 327
                 689***********999842 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.11
                 EEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SS CS
        cobW   4 vltGflGsGKTtLlnhllenraglklavivNefge 38 
                 +l+G  G GKTt++++l +  +++ +av +  ++e
  CCE31057.1 642 LLVGETGIGKTTVVQQLADSLRHKLIAVNLSQQSE 676
                 6899**************99999999996666665 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 4.5
                  EEEESTTCCHHHHHHHHHC CS
        cobW    4 vltGflGsGKTtLlnhlle 22  
                  ++ G+  +GKT++++ l +
  CCE31057.1 1092 LIQGPTSAGKTSMIEYLAN 1110
                  689999********99874 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.49
                  EEEESTTCCHHHHHHHHHCT--SS CS
        cobW    4 vltGflGsGKTtLlnhllenragl 27  
                  +l+G  G GKTt+++ l e   ++
  CCE31057.1 1384 LLVGETGCGKTTVVQLLAEA-LQQ 1406
                  689*********99877633.333 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.1
                  EEEESTTCCHHHHHHHHH CS
        cobW    4 vltGflGsGKTtLlnhll 21  
                  +l G++G GKTtL+ +l 
  CCE31057.1 1764 LLEGSPGVGKTTLVAALS 1781
                  689***********9876 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 3.1
                  EEEESTTCCHHHHHHHHHCT--SS- CS
        cobW    4 vltGflGsGKTtLlnhllenraglk 28  
                  +l+++ G GK++Lln + +  +g+ 
  CCE31057.1 2074 ILSSPSGYGKSSLLNYVAAL-SGKP 2097
                  799************98754.4555 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.063        20      10      32 ..     634     656 ..     625     709 .. 0.89
   2 ?   -0.5   0.0       2.9   9.2e+02      17      31 ..    1091    1105 ..    1080    1116 .. 0.85
   3 ?    6.1   0.0     0.027       8.6      12      35 ..    1378    1401 ..    1371    1709 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.063
                 HHHTTCEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  10 lilgggdvlvaaeTGsGKTlafl 32 
                 +i +++ vl+ +eTG GKT++ +
  CCE31057.1 634 AIKHEEPVLLVGETGIGKTTVVQ 656
                 4557789************9965 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.9
                  EEEEESTTSSHHHHH CS
                  xxxxxxxxxxxxxxx RF
        DEAD   17 vlvaaeTGsGKTlaf 31  
                  vl++++T +GKT + 
  CCE31057.1 1091 VLIQGPTSAGKTSMI 1105
                  99**********875 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.027
                  HTTCEEEEEESTTSSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   12 lgggdvlvaaeTGsGKTlaflipv 35  
                   +++ vl+ +eTG GKT++ ++ +
  CCE31057.1 1378 KNNEPVLLVGETGCGKTTVVQLLA 1401
                  46789**************88755 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       3.3     1e+03      19      41 ..     304     326 ..     291     338 .. 0.83
   2 ?    3.6   0.0      0.11        35      16      38 ..     635     657 ..     626     664 .. 0.87
   3 ?    4.0   0.0     0.088        28      15      37 ..    1376    1398 ..    1368    1407 .. 0.84
   4 ?    1.6   0.0      0.46   1.5e+02      16      36 ..    1757    1777 ..    1748    1781 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3.3
      ATPase  19 grvvlitGepGtGKtifalqFli 41 
                 +  +l+ G +G GKt f+ + ++
  CCE31057.1 304 DDPILLHGMAGVGKTSFVHELAM 326
                 6679***********99887655 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.11
      ATPase  16 ipegrvvlitGepGtGKtifalq 38 
                 i +++ vl++Ge+G GKt++++q
  CCE31057.1 635 IKHEEPVLLVGETGIGKTTVVQQ 657
                 778999*************9998 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.088
      ATPase   15 GipegrvvlitGepGtGKtifal 37  
                   + +++ vl++Ge+G+GKt++++
  CCE31057.1 1376 ALKNNEPVLLVGETGCGKTTVVQ 1398
                  5778899************9865 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.46
      ATPase   16 ipegrvvlitGepGtGKtifa 36  
                  + +++ +l+ G+pG GKt+++
  CCE31057.1 1757 LQMQKPILLEGSPGVGKTTLV 1777
                  567889************997 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       2.2     7e+02      52      83 ..     640     671 ..     622     677 .. 0.81
   2 ?   -2.8   0.0       8.6   2.7e+03      41      67 ..    1079    1105 ..    1077    1120 .. 0.76
   3 ?    2.8   0.0      0.18        56      22      81 ..    1356    1411 ..    1345    1417 .. 0.78
   4 !    7.6   0.0    0.0061       1.9      41      77 ..    1752    1787 ..    1743    1798 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2.2
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelgedvpfval 83 
                  vLl+G++g Gkt +   ++ +l +++  v l
  CCE31057.1 640 PVLLVGETGIGKTTVVQQLADSLRHKLIAVNL 671
                 59**************9999999877655555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8.6
                  XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   41 elikekklaGravLlaGpsgtGktala 67  
                  +l+++       vL++Gp+++Gkt++ 
  CCE31057.1 1079 NLVRATSTRRFPVLIQGPTSAGKTSMI 1105
                  6666666665579***********975 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.18
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   22 eeeglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelgedvpfv 81  
                  +++g+v  ++ r+   ++ + +k+++     vLl+G++g Gkt +   ++++l ++++ v
  CCE31057.1 1356 NAQGVVWTHAMRRLYVLVSRALKNNE----PVLLVGETGCGKTTVVQLLAEALQQELHIV 1411
                  45667777777777766666666665....79*************999999999988766 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0061
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   41 elikekklaGravLlaGpsgtGktalaiaiskelged 77  
                  +++++ ++  + +Ll G +g Gkt l  a+s++ g+ 
  CCE31057.1 1752 RVVRALQMQ-KPILLEGSPGVGKTTLVAALSQACGRP 1787
                  677888887.99********************99964 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.76   2.4e+02       6      45 ..     291     330 ..     286     340 .. 0.81
   2 ?    1.9   0.0      0.41   1.3e+02      11      40 ..     630     659 ..     621     720 .. 0.80
   3 ?    5.6   0.0      0.03       9.3      13      44 ..    1374    1404 ..    1368    1470 .. 0.80
   4 ?    0.1   0.0       1.4   4.5e+02      11      39 ..    1752    1780 ..    1745    1788 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.76
                 SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHH CS
        PhoH   6 tkeQkeylealkkndivfaiGpaGtGKtylavalavealk 45 
                 t + +++++ l++ d +   G aG GKt +   la+++ k
  CCE31057.1 291 TGNMERLATLLRDDDPILLHGMAGVGKTSFVHELAMQLGK 330
                 55667778888999999***********999999988755 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.41
                 HHHHHHHH-SEEEEE--TTSSTTHHHHHHH CS
        PhoH  11 eylealkkndivfaiGpaGtGKtylavala 40 
                 +++ a+k+++ v  +G++G GKt +  +la
  CCE31057.1 630 QIAVAIKHEEPVLLVGETGIGKTTVVQQLA 659
                 55668889999************8865554 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.03
                  HHHHHH-SEEEEE--TTSSTTHHHHHHHHHHH CS
        PhoH   13 lealkkndivfaiGpaGtGKtylavalaveal 44  
                   +alk+n+ v  +G++G+GKt +   la eal
  CCE31057.1 1374 SRALKNNEPVLLVGETGCGKTTVVQLLA-EAL 1404
                  57999****************8765554.333 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.4
                  HHHHHHHH-SEEEEE--TTSSTTHHHHHH CS
        PhoH   11 eylealkkndivfaiGpaGtGKtylaval 39  
                  ++++al+ ++ +   G+ G GKt l  al
  CCE31057.1 1752 RVVRALQMQKPILLEGSPGVGKTTLVAAL 1780
                  6899999999999**********997664 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0    0.0011      0.35      10      97 ..     320     406 ..     318     415 .. 0.81
   2 ?    0.0   0.0         3   9.6e+02       3      65 ..    1283    1368 ..    1282    1387 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0011
                 HHHHHHHHSS....EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEEE CS
       GAF_2  10 lvldelvelg..aalgyillvdddgglrlaawgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglpaghaglrsflavP 97 
                 +v++ + +lg  ++++ ++l ++ ++ +++   + +++  +++  + + g++ +a+r+gr+v+++dl++ p    + +     r +l +P
  CCE31057.1 320 FVHELAMQLGkySDMVTLHLNEQ-TDAKMLIGLYSTDSKPGSF--QWRPGVLTTAVREGRWVLIEDLDRAPTEVLSTLLPLIERKELLIP 406
                 68889999966899******884.445799999999*******..5667*99***************99998887777777777777777 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 3
                  HHHHHHHHHHHHH.HHSS...EEEEEEE-....TTS-EEEE....................EEEES-TTSTT-S-B---TT.HHHHHHHH CS
       GAF_2    3 dleelldlvldel.velg.aalgyillvd....ddgglrla....................awgeaeeefgaaldrplgeg.lvgealrt 65  
                  +l++l++ +l+e+ ++   aa+g++ll +    ++++  +a                    a+  +e +  a++  + ++g ++ +a+r 
  CCE31057.1 1283 TLRDLFRWALREAdTREEiAAHGFMLLAErvrvEEER--IAvkdviekvfrvkidphelysASKAPELKMVAKA--SNAQGvVWTHAMRR 1368
                  8999*********55567899******7733333333..22334444544555555555333333333334444..55777556666665 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0       0.3        95      27      48 ..     642     663 ..     636     671 .. 0.85
   2 ?    5.3   0.0     0.057        18      27      48 ..    1384    1405 ..    1380    1412 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.3
       DUF87  27 AilgsTGsGKSntvavLleell 48 
                 + +g+TG GK++ v  L ++l 
  CCE31057.1 642 LLVGETGIGKTTVVQQLADSLR 663
                 679************9998885 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.057
       DUF87   27 AilgsTGsGKSntvavLleell 48  
                  + +g+TG GK++ v +L e l 
  CCE31057.1 1384 LLVGETGCGKTTVVQLLAEALQ 1405
                  678************9998775 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.8   2.5e+02       6      33 ..     641     668 ..     637     681 .. 0.85
   2 ?    1.8   0.0      0.62     2e+02       6      32 ..    1383    1409 ..    1379    1441 .. 0.77
   3 ?    5.2   0.0     0.056        18       6      31 ..    1763    1788 ..    1759    1821 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.8
  Ploopntkinase3   6 iylvGqPGaGkstlmaeltkgfdrskve 33 
                     + lvG+ G Gk+t++ +l++++ ++ ++
      CCE31057.1 641 VLLVGETGIGKTTVVQQLADSLRHKLIA 668
                     679*****************99877655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.62
  Ploopntkinase3    6 iylvGqPGaGkstlmaeltkgfdrskv 32  
                      + lvG+ G+Gk+t++  l+++++++  
      CCE31057.1 1383 VLLVGETGCGKTTVVQLLAEALQQELH 1409
                      679****************99987532 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.056
  Ploopntkinase3    6 iylvGqPGaGkstlmaeltkgfdrsk 31  
                      i l G+PG Gk+tl+a+l+++  r  
      CCE31057.1 1763 ILLEGSPGVGKTTLVAALSQACGRPL 1788
                      7899**************99877644 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       5.7   1.8e+03       4      24 ..     309     329 ..     307     337 .. 0.84
   2 ?    4.2   0.1      0.12        38       3      31 ..     642     670 ..     641     676 .. 0.87
   3 ?   -1.7   0.0       7.8   2.5e+03       4      32 ..    1093    1121 ..    1091    1128 .. 0.78
   4 ?    4.5   0.0     0.097        30       3      29 ..    1384    1410 ..    1383    1487 .. 0.79
   5 ?   -1.3   0.0       6.1   1.9e+03       5      21 ..    1766    1782 ..    1763    1792 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 5.7
        MobB   4 ivgksgsGKTtLleklipelk 24 
                 + g+ g GKT+++++l  +l 
  CCE31057.1 309 LHGMAGVGKTSFVHELAMQLG 329
                 67999*********9988875 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.12
        MobB   3 givgksgsGKTtLleklipelkarglrvg 31 
                  +vg  g GKTt +++l   l+++ + v+
  CCE31057.1 642 LLVGETGIGKTTVVQQLADSLRHKLIAVN 670
                 589*****************999877765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 7.8
        MobB    4 ivgksgsGKTtLleklipelkarglrvgt 32  
                  i g   +GKT+++e l +   ++ +r++ 
  CCE31057.1 1093 IQGPTSAGKTSMIEYLANFTGNKFVRINN 1121
                  6788899********99888877777765 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.097
        MobB    3 givgksgsGKTtLleklipelkarglr 29  
                   +vg  g+GKTt ++ l ++l+++   
  CCE31057.1 1384 LLVGETGCGKTTVVQLLAEALQQELHI 1410
                  589**********99988888776444 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 6.1
        MobB    5 vgksgsGKTtLleklip 21  
                   g  g GKTtL+  l +
  CCE31057.1 1766 EGSPGVGKTTLVAALSQ 1782
                  57889*******98855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4991 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1858  (0.103631); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                       212  (0.0118244); expected 17.9 (0.001)
Passed Fwd filter:                        92  (0.00513135); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 3.59u 0.38s 00:00:03.97 Elapsed: 00:00:00.74
# Mc/sec: 20301.50
//
Query:       CCE31058.1  [L=193]
Description: related to 60S ribosomal protein L12,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-20   71.1   5.3    7.3e-20   71.1   5.3    2.4  3  Ribosomal_L12    Ribosomal protein L7/L12 C-terminal domain
    1.9e-12   46.6  12.1    1.9e-12   46.6  12.1    3.3  3  Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
  ------ inclusion threshold ------
       0.37    9.4   3.6       0.48    9.0   3.6    1.1  1  DUF3138          Protein of unknown function (DUF3138)
       0.98   10.0  17.8       0.25   12.0  11.1    2.4  2  Ribosomal_60s    60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.041   1.9e+02      15      40 ..      50      75 ..      41      78 .. 0.77
   2 ?   -4.1   0.7         4   1.8e+04      47      53 ..      97     103 ..      93     108 .. 0.66
   3 !   71.1   5.3   1.6e-23   7.3e-20       1      65 [.     113     178 ..     113     180 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.041
                   HHHHHHHHH---HHHHHHHHTTTTST CS
  Ribosomal_L12 15 VIKaVreitglgLkeaKdlVeaapkv 40
                   +  +V +i  l L e  dlV ++ ++
     CCE31058.1 50 IAEIVDQISKLTLLETADLVSSLKSK 75
                   445688999***********987765 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 4
                    HHHHHHH CS
  Ribosomal_L12  47 keeAeei 53 
                     eeAee+
     CCE31058.1  97 AEEAEEA 103
                    4666665 PP

  == domain 3  score: 71.1 bits;  conditional E-value: 1.6e-23
                    EEEEEEE-TT-.HHHHHHHHHHHH---HHHHHHHHTTTTSTEEEEE-HHHHHHHHHHHHCTT-EEE CS
  Ribosomal_L12   1 fdViLksagak.KiaVIKaVreitglgLkeaKdlVeaapkvvkegvskeeAeeikkkLeeaGAeve 65 
                    f++ L++++a+ K +VIK+++++ gl+L+e+K++Ve+apk +ke+v+keeAe+i + ++e GA+v 
     CCE31058.1 113 FTLKLQAFDAAlKAKVIKEIKSMLGLSLVESKKFVESAPKMMKENVAKEEAEQIIASMKELGATVV 178
                    899*************************************************************95 PP

>> Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6  12.1   4.3e-16   1.9e-12       1      48 []      49      96 ..      49     110 .. 0.86
   2 ?   -0.3   0.1       0.2   8.8e+02       4      12 ..     127     135 ..     125     149 .. 0.58
   3 ?   -2.3   0.2      0.87   3.9e+03       3      12 ..     164     173 ..     163     173 .. 0.86

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 4.3e-16
                     HHHHHHHHHHTSBHHHHHHHHHHHHHHTTHHHHHHHHHH.H.HHHHHHH CS
  Ribosomal_L12_N  1 kieeiieaikeltvLElseLvkalEekFGVsAAAPvavaaa.aaaaaaa 48
                     ki ei+++i++lt+LE+++Lv+ l++k+++++ +P++++aa +aaa+aa
       CCE31058.1 49 KIAEIVDQISKLTLLETADLVSSLKSKLNIPD-MPMGGFAAaPAAAPAA 96
                     799****************************9.7888885545555443 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.2
                      HHHHHHHTS CS
  Ribosomal_L12_N   4 eiieaikel 12 
                      ++i++ik++
       CCE31058.1 127 KVIKEIKSM 135
                      566666654 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.87
                      HHHHHHHHTS CS
  Ribosomal_L12_N   3 eeiieaikel 12 
                      e+ii++ kel
       CCE31058.1 164 EQIIASMKEL 173
                      8999999987 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.6   0.00011      0.48      19     103 ..      42     132 ..      29     145 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00011
     DUF3138  19 aaaatadrikalkaqltalq.....rqvkelraalaaakaaaGgkissqkaa.aaaaaaaeaaaalteddvaqlkeqianaelkvdalqea 103
                  aaat  +i+ +  q+++l        v+ l++ l+    + Gg +++  aa aaa +a eaa+a +e  +  lk q  +a lk   ++e 
  CCE31058.1  42 EAAATNPKIAEIVDQISKLTlletaDLVSSLKSKLNIPDMPMGGFAAAPAAApAAAEEAEEAAPAAAEKTLFTLKLQAFDAALKAKVIKEI 132
                 4566777788888888777521111335555555666668999987777666245556789999******************999887765 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  11.1   5.6e-05      0.25       7      69 ..      50     110 ..      31     112 .. 0.57
   2 ?    2.0   0.5     0.069   3.1e+02      24      70 ..     118     164 ..     114     183 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s   7 ikkvlkaagveveaarvkllvkalegkdieellangaaklaaaaaaaaaaaaaaaaaaaaeek 69 
                    i++++ +  +  + ++++l+ +   + +i ++ + g a+  a aaa+aaa++a++aa+aa+ek
     CCE31058.1  50 IAEIVDQISKLTLLETADLVSSLKSKLNIPDMPMGGFAA--APAAAPAAAEEAEEAAPAAAEK 110
                    444444444444444444444444444666666666555..5556666666666666666665 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.069
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  24 kllvkalegkdieellangaaklaaaaaaaaaaaaaaaaaaaaeekk 70 
                    +++ +al+ k i+e+ +  + +l++++    +a +  ++  a+ee++
     CCE31058.1 118 QAFDAALKAKVIKEIKSMLGLSLVESKKFVESAPKMMKENVAKEEAE 164
                    56667777777777777777777666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1078  (0.0601261); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1488.74
//
Query:       CCE31059.1  [L=254]
Description: uncharacterized protein CPUR_04910 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-46  157.8   0.4    2.7e-46  156.6   0.2    1.6  2  CTK3      CTD kinase subunit gamma CTK3
      4e-20   71.7  12.9      4e-20   71.7  12.9    2.0  2  CTK3_C    CTD kinase subunit gamma CTK3 C-terminus
     0.0048   15.8   0.2       0.01   14.7   0.2    1.5  1  ATHILA    ATHILA ORF-1 family


Domain annotation for each model (and alignments):
>> CTK3  CTD kinase subunit gamma CTK3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.2   4.5e-50   2.7e-46       1     120 [.       2     119 ..       2     122 .. 0.94
   2 ?   -1.9   0.0      0.53   3.1e+03      94     114 ..     159     182 ..     123     188 .. 0.63

  Alignments for each domain:
  == domain 1  score: 156.6 bits;  conditional E-value: 4.5e-50
                 --HHHHHHHHHHHHTT--SSGGGTHHHHHHHHHTGGGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHTT--S..THHHHHHHTHHHHHHHHS- CS
        CTK3   1 mDpFEvrsqFsqlLrkLtasvqslqkaaqfAlknkdkeedlfscileqlesadlNtranilyfidllleeslkegqsekspYveslkrdilklvdsvvP 99 
                 +DpFEvr++Fs +L++L+asv+s qkaaq+Alk+kd++edl+scileq+e++++Ntrani++fi+++l+ +  +g+    +Y+++++rdi+++vd+v+P
  CCE31059.1   2 ADPFEVRMRFSMQLQHLNASVNSAQKAAQYALKYKDMDEDLHSCILEQVERTNMNTRANIMFFIEHFLDLAK-HGHA---DYIRMMQRDIIRVVDAVAP 96 
                 6*******************************************************************9874.4444...7****************** PP

                 ..HHHHHHHHHHHHHHHHHHHTT CS
        CTK3 100 ..gsgaaNlksvrkilkslklks 120
                    sga N+k+vr++l++l++k 
  CCE31059.1  97 dhCSGATNVKVVRRVLQGLQSKG 119
                 9999***************9986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.53
                 HHHHS-HHHHHHHHHH...HHHHH CS
        CTK3  94 vdsvvPgsgaaNlksv...rkilk 114
                   +v+P+sg+  + +    r+i +
  CCE31059.1 159 TATVAPKSGQSSAAHRldkRQIEQ 182
                 356778777666555445566655 PP

>> CTK3_C  CTD kinase subunit gamma CTK3 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.42   2.5e+03      46      65 ..      34      53 ..      16      56 .. 0.75
   2 !   71.7  12.9   6.7e-24     4e-20       1      67 [.     176     236 ..     176     238 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.42
      CTK3_C 46 etsdlneddeeealeeleel 65
                +++d++ed +   le++e  
  CCE31059.1 34 KYKDMDEDLHSCILEQVERT 53
                67889999988888887765 PP

  == domain 2  score: 71.7 bits;  conditional E-value: 6.7e-24
      CTK3_C   1 skkqilkRiEeDRErhKRlrEniWvvprskekslateaEfenlWeetsdlneddeeealeeleelne 67 
                 +k+qi++RiEeDRErhKR+rE+iW++pr +      +aE+++lWeetsd++edd++  +ee++++++
  CCE31059.1 176 DKRQIEQRIEEDRERHKRQRESIWAIPRMD------NAELNKLWEETSDFGEDDDRLLTEEANDFEK 236
                 79***************************9......9*************************99875 PP

>> ATHILA  ATHILA ORF-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   1.7e-06      0.01     304     357 ..      13      64 ..       4      86 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-06
      ATHILA 304 idldylkrkeflelkasddayrykfehselkksellLpskevTtieekenIdfk 357
                 ++l++l+   ++++++++ +y  k+++      +++L   e T+++++ nI+f 
  CCE31059.1  13 MQLQHLN--ASVNSAQKAAQYALKYKDMDEDLHSCILEQVERTNMNTRANIMFF 64 
                 5666666..56899999999********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1270  (0.070835); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2000.07
//
Query:       CCE31060.1  [L=312]
Description: probable pyrroline-5-carboxylate reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-32  112.1   2.1      3e-32  110.9   2.1    1.6  1  P5CR_dimer     Pyrroline-5-carboxylate reductase dimerisation
    3.5e-10   40.3   0.0    7.5e-10   39.3   0.0    1.5  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> P5CR_dimer  Pyrroline-5-carboxylate reductase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   2.1   3.3e-36     3e-32       2     102 ..     194     295 ..     193     296 .. 0.96

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 3.3e-36
                 CHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHCHS.HHHHHHHH--TTSHHHHHHHHHHHTTHHHHHHHHHHHHHHH CS
  P5CR_dimer   2 kqldavtalsGsgpAyvflliealadagvklGlsreeArelaaqtvaGaaklllese.paelrdkvtspgGtTiaglkeleegglraavieaveaaakr 99 
                 +++da tal+Gs+pA ++l++ea +d++v++Gl+r+eA+++a+q+++G+  l++++e pa lr+kv++pgG+Ti gl +leeg+ r+++ +a+++a+  
  CCE31060.1 194 NNMDASTALCGSSPAMFALMLEAAIDGAVAMGLPRAEAQRMATQSMRGMTGLVQSGEhPALLREKVCTPGGCTIGGLLVLEEGRARGTISRAIREATVV 292
                 57***************************************************97778**************************************977 PP

                 HHH CS
  P5CR_dimer 100 ske 102
                 +++
  CCE31060.1 293 ASQ 295
                 766 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   8.3e-14   7.5e-10      27      97 .]      43     118 ..      33     118 .. 0.93

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 8.3e-14
                    CEEEEEESSCCCHHHHHHHHC.....-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHC.GHHHHTTSEEEEESSS CS
  F420_oxidored  27 eivvansrnpekaeelaeelg.....vkvtavdneeaaeeadvvvlavkpedveevlsel.akdalkgklvisvlag 97 
                     ++ a+ r+ e+a+  +++l      vkv + dn  a+++a vv+l +kp++v +vl +  ++dalkgkl+isv+ag
     CCE31060.1  43 RFI-ACVRSAESAKRVKSALWehssiVKVVQNDNIAAVQQAQVVLLGCKPYMVNNVLGQPgMADALKGKLLISVCAG 118
                    556.99**********99998999*********************************99889*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2651.69
//
Query:       CCE31061.1  [L=481]
Description: related to histone acetyltransferase subunit HAT1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-45  154.0   0.0      7e-45  153.1   0.0    1.4  1  Hat1_N           Histone acetyl transferase HAT1 N-terminus
     0.0033   17.4   0.0      0.007   16.3   0.0    1.5  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.043   14.1   0.0        0.1   12.9   0.0    1.6  1  Acetyltransf_1   Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> Hat1_N  Histone acetyl transferase HAT1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   0.0   1.2e-48     7e-45       1     160 []      10     167 ..      10     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 153.1 bits;  conditional E-value: 1.2e-48
                 GEEEHHHHEEEEEESSS.EEE.........E--S--HHHHTTTTEEESEES-EEEEEEETTT--EEEEEE-SEE--.STTS-...-HHHHHHTTS-T.. CS
      Hat1_N   1 wtvdanealkiklvrseedleeeektksesfhPeftyqiFgeeetIfGYkdLkInlyfaagslkpylkvsyseklkdksktek..dvekklkeflpeea 97 
                 w +d+n+al+++lv++++       + +++fhP+fty+iFge+e+IfGYk+LkI l+f+a++++p+++++ys+kl++    ++  dv++ l+e+lp+ a
  CCE31061.1  10 WLADSNDALSLSLVSPSKSGL----RLVDTFHPDFTYPIFGEDEKIFGYKGLKIGLRFRANDMRPHVQITYSNKLTPSAGMDEptDVKAVLQEHLPKIA 104
                 899*************77644....7899**********************************************8554443245************** PP

                 ES-HHHHHHHHHHHH.H--GGSEEEEEETTEE..EEEEEEESSSHHHHHHHHHHTHHHHHHST CS
      Hat1_N  98 fkskeeFekaleekaksfkppGelihsytrekkefeiykasladpavrelhrrlqifvllFIE 160
                 f+  ++Fe++ ++   +++ppG l ++ +  + ++ei+k+slad+av +l  r+qi+v+l IE
  CCE31061.1 105 FTRSSDFESSAQKLGDNWHPPGALHETIEGPDGQYEIWKGSLADSAVMQLNARVQILVPLLIE 167
                 ************99*****************999****************************9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.2e-06     0.007      50      97 ..     252     299 ..     247     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.2e-06
  Acetyltransf_10  50 dgshisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspya 97 
                       + ++s +++ p ++++G g++L + + +++++++ ++ e+tv+  ++a
       CCE31061.1 252 CRTRLSQFVILPPFQRKGNGAKLYKSIFQYYHDNE-QThEFTVENPNEA 299
                      57799*************************96554.555****987766 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.7e-05       0.1      63     107 ..     256     299 ..     222     302 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.7e-05
                     EEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHH CS
  Acetyltransf_1  63 ieslaVspeyrgkGlGsaLlealeerareegikkivlaveednda 107
                     + ++++ p +++kG G +L++ + ++  +++ +  +++ve++n+a
      CCE31061.1 256 LSQFVILPPFQRKGNGAKLYKSIFQYYHDNEQTH-EFTVENPNEA 299
                     6689**************************8766.7889999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 3857.13
//
Query:       CCE31062.1  [L=695]
Description: uncharacterized protein CPUR_04913 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.2e-110  368.5   9.0   7.1e-110  368.3   9.0    1.0  1  LMBR1     LMBR1-like membrane protein
  ------ inclusion threshold ------
      0.062   13.6   0.4       0.14   12.5   0.4    1.5  1  Rx_N      Rx N-terminal domain


Domain annotation for each model (and alignments):
>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.3   9.0    8e-114  7.1e-110       2     510 .]      13     527 ..      12     527 .. 0.93

  Alignments for each domain:
  == domain 1  score: 368.3 bits;  conditional E-value: 8e-114
       LMBR1   2 sliillllflllfllallllrrykrkkdqeavvkllvllalalsflivlllPlDiastiyrqnealypcsyylqwlseslikvlWrivYwlsnlllwii 100
                 s+i++++++l+++ +al++lr+y  +++++ + ++++++al l+ ++vll+P+D+as++ +      +      wl+e++++v Wri Ywl+++l+w+i
  CCE31062.1  13 SIIFSIVALLAISAIALFILRYYLPLRTTPGFYLVPIFFALWLPSIAVLLVPIDLASSAAT-----NDEATRGIWLPERVVLVSWRITYWLTFVLTWFI 106
                 67999****************************************************4444.....46677888************************* PP

       LMBR1 101 lPfaqfYvesggftgkgklkrslyenaiiyllllvivlglliyvliilqklsllsiksllpilislantwGlvllilllGyGlvelPrslwreiksdld 199
                 lP++ +Y+++g+ ++++kl++sl++na +y++ll    + l+yv ++ + ls++   sl++++++la++wGlvl+i+l+G+Glv++Pr ++r  +++++
  CCE31062.1 107 LPLLGEYSDAGYHEPNDKLAYSLRQNAQYYAILLGSSAVGLLYVITA-YRLSFT---SLKGLIMTLAYCWGLVLAIYLMGHGLVAIPRRMIR--NASIS 199
                 ***********************************************.******...***********************************..***** PP

       LMBR1 200 eelkklyfeaaklntekeeaereledllkevkklrksisesdp.lrkyleeilk...........................kvPeeiaeklksnenkte 270
                  +l++l+++a+k+++++e++   le++  +v++l ++++ ++  +++++ee+ +                           +vP++i          t 
  CCE31062.1 200 GRLRRLQTRAPKVHEDMEDSLISLEEIEAQVEELGRRKTGTALdFQEWIEELQElaniwpssqsqrgvlaaatsmagassrNVPSVI----------TG 288
                 ******************************************99******9999777666666666666555555555555555554..........55 PP

       LMBR1 271 eslaklekqlikalqkrertekqwkrllekalelediiknksskekefkssessrrgefakqgklkltptleyywaklllplvllilsiilvllsiiii 369
                 ++la+l+++l +a++ r r  ++w +l+ +a +l++i+++++sk+ ef +   s++++++++++ +ltp+++y+w+ +l p+  +++ i+l l+s++++
  CCE31062.1 289 KYLAELNRRLVRARHARSRYVDEWTQLVLEAGDLQAILNSAASKKLEFDQV--SPHASAWDKSQ-FLTPYTRYIWYYHLVPYAHVAFGILLGLASACVV 384
                 5************************************************88..55555555543.78******************************** PP

       LMBR1 370 lseltkllekpplslfalfievsaessfglfga..elieillilYlmlcayvglfklklpnfyrlaphhqTdmsslifnaalllrltsPlclnflglih 466
                 +sel+ ++  p ls++ l +++++  +   +g+  +++++++i+Y++ +a+ +++++k++  ++l++ ++T  +s  ++++++++lt+Pl +nf++++ 
  CCE31062.1 385 WSELVRYT-FPRLSVIRLSVVHHWVGEKPEVGFagQVLSAFWICYMCAAAFLSMTEVKVWRGRALVK-RNTAYESAFWYSMQVAKLTIPLSYNFMTFLS 481
                 ********.9**********************99*********************************.******************************8 PP

       LMBR1 467 fd...eTaFtqllGsmdvleflggfgfviyypifilllvvatlfnll 510
                  +   +T F+++lG+++  +  g   f+  +pi++l++vvat f l+
  CCE31062.1 482 KEvyqKTVFYRFLGQLIEETAPG-RWFDDVFPIVVLFPVVATTFGLY 527
                 88*************99999989.9******************9876 PP

>> Rx_N  Rx N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   1.5e-05      0.14      18      65 ..     207     255 ..     196     256 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.5e-05
        Rx_N  18 kllkgvkeeleklkdeLesiqavLedaeerqi.kdeavkeWlkelrdla 65 
                 ++  +v+e++e     Le i+a +e+  +r++ +    +eW++el++la
  CCE31062.1 207 TRAPKVHEDMEDSLISLEEIEAQVEELGRRKTgTALDFQEWIEELQELA 255
                 67789***************************788999*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.55
# Mc/sec: 3796.53
//
Query:       CCE31063.1  [L=379]
Description: uncharacterized protein CPUR_04914 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.3e-07   28.6   0.5    1.5e-06   27.7   0.0    1.7  2  CorA         CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
      0.012   15.9   0.1       0.08   13.2   0.0    2.2  2  DUF4381      Domain of unknown function (DUF4381)
      0.067   12.4   3.9       0.13   11.4   0.1    2.6  3  DLP_helical  Dynamin-like helical domain
      0.074   13.1   0.2       0.18   11.8   0.0    1.7  2  PgaD         PgaD-like protein
       0.38   10.3   2.7       0.74    9.4   0.3    2.2  2  DUF4795      Domain of unknown function (DUF4795)
        8.7    5.2   7.9       0.39    9.7   0.7    2.2  3  IFT57        Intra-flagellar transport protein 57


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       2.6   7.6e+03     171     195 ..      93     117 ..      84     131 .. 0.48
   2 !   27.7   0.0   5.2e-10   1.5e-06     181     289 ..     197     330 ..     186     334 .. 0.75

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 2.6
        CorA 171 revlkrlla.kaddkllddedkeylr 195
                 r++l r+l+      ++ +e+++y++
  CCE31063.1  93 RDWL-RRLEnAVSLRNEVEEREQYFQ 117
                 4444.222222233333333334444 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 5.2e-10
        CorA 181 addkllddedkeylrdlldelerllemlealrerleslqdtyssllser.....................lNrvmkvLTvltaiflPlTlitGiyGmNf 258
                 ++ ++l + ++ +l+  + +l+ l+++++++ erl + ++++ +++s+r                       + mk+++++ ++flP T +++++ m f
  CCE31063.1 197 REMDKLHRSMASRLEFYQAKLKGLENYIHTTLERLKVQREALYNIMSQRearlnleiageqrriahaskrDGTAMKTISLMGTLFLPGTYLASVFSMTF 295
                 34444444555556666666666999999999999999999999999999999999*****************************************88 PP

        CorA 259 kglPelewsy....gypfvlllglmallailllfw 289
                  +  e  ++     + +f++++ ++a+++++++++
  CCE31063.1 296 FNFQESAHPVsvglWIYFAVTIPITAAIVAVWMWY 330
                 87666666662222333333555555555555555 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.51   1.5e+03      92     111 ..      90     109 ..      70     125 .. 0.61
   2 ?   13.2   0.0   2.7e-05      0.08      13      53 ..     301     341 ..     299     369 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.51
     DUF4381  92 ltGeaWlafLdatlpakgfa 111
                    ++Wl+ L++     ++ 
  CCE31063.1  90 RDARDWLRRLENAVSLRNEV 109
                 34466666666665554444 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.7e-05
     DUF4381  13 swwPpapGwwlllaalllllllvlalwllrrrkrnrreAlr 53 
                 s  P  +G w+  a+ + +  +++a+w +  r+r++r A +
  CCE31063.1 301 SAHPVSVGLWIYFAVTIPITAAIVAVWMWYDRRREKRYAKD 341
                 567999*******6655588888888888866666666654 PP

>> DLP_helical  Dynamin-like helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1     0.078   2.3e+02      94     139 ..      86     129 ..      80     133 .. 0.73
   2 ?   -1.1   0.1      0.28   8.5e+02     279     306 ..     218     245 ..     195     257 .. 0.77
   3 ?   11.4   0.1   4.4e-05      0.13     263     309 ..     320     366 ..     313     373 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.078
  DLP_helical  94 eesakriekelaelkkeieearielreelkayfsdLilqvkglsle 139
                  ++++++ ++ l++l++ ++   ++  ee ++yf+d + +v+gl+++
   CCE31063.1  86 DQKQRDARDWLRRLENAVSL--RNEVEEREQYFQDGLMEVDGLNRD 129
                  55666666777777766654..344567799***********9987 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.28
  DLP_helical 279 kelkelkeelveklkdqrkeilellndd 306
                  k l+++++++ e lk qr+ ++++++++
   CCE31063.1 218 KGLENYIHTTLERLKVQREALYNIMSQR 245
                  5577777788888888888887777665 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 4.4e-05
  DLP_helical 263 elalevwdslkqskkekelkelkeelveklkdqrkeilellnddefi 309
                  + a+ ++ ++ ++++ek++++  e+l+++++++ k+i+ +l ++++ 
   CCE31063.1 320 TAAIVAVWMWYDRRREKRYAKDDEDLEQSIEKMEKDIMFHLRKRTMS 366
                  456666678999****************************9998765 PP

>> PgaD  PgaD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.6   4.7e+03      44      79 ..     191     224 ..     185     226 .. 0.60
   2 ?   11.8   0.0   6.1e-05      0.18      76     106 ..     311     340 ..     276     370 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.6
        PgaD  44 glelfeaeillglfseasasevegslseletlrlYa 79 
                   +++++e+    ++ + as +e ++ +l+ l  Y+
  CCE31063.1 191 AERAHHREMD--KLHRSMASRLEFYQAKLKGLENYI 224
                 4445555554..446666777777777777777775 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 6.1e-05
        PgaD  76 rlYalilvviavlLilWaklnrvrfkakkrr 106
                 + +a+ + ++a ++ +W+++ r+r k+++ +
  CCE31063.1 311 IYFAVTIPITAAIVAVWMWYDRRREKRYA-K 340
                 445666789***************99984.3 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00025      0.74     106     164 ..     190     255 ..     143     264 .. 0.68
   2 ?    0.5   0.2      0.13   3.8e+02      36      56 ..     334     354 ..     331     373 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00025
     DUF4795 106 eqeealkkaldtLqeelkekld..rlelepLkeqleerlkelq...kelqeamekedk..edeaag 164
                  +e+a ++ +d+L++++ ++l+  +  l+ L +++  +l+ l+   ++l + m++++   + e ag
  CCE31063.1 190 HAERAHHREMDKLHRSMASRLEfyQAKLKGLENYIHTTLERLKvqrEALYNIMSQREArlNLEIAG 255
                 8899999*****************************777766522366666666665455445555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.13
     DUF4795  36 rledkekklealkkqieelek 56 
                 r++++ k++e l+++ie+ ek
  CCE31063.1 334 REKRYAKDDEDLEQSIEKMEK 354
                 567777777777777777765 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.24   7.3e+02     216     239 ..      89     112 ..      82     124 .. 0.78
   2 ?    9.7   0.7   0.00013      0.39     223     268 ..     193     238 ..     186     266 .. 0.87
   3 ?   -2.5   0.2      0.62   1.9e+03     140     157 ..     342     359 ..     330     371 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.24
       IFT57 216 kadakdWrahleqmkkhkksiees 239
                 + da+dW ++le+  ++++++ee 
  CCE31063.1  89 QRDARDWLRRLENAVSLRNEVEER 112
                 678889999999999999888875 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00013
       IFT57 223 rahleqmkkhkksieeslpetksqlkklhedisktlekiesrEkyl 268
                 rah  +m k+++s+++ l+ ++ +lk l++ i  tle+++ + + l
  CCE31063.1 193 RAHHREMDKLHRSMASRLEFYQAKLKGLENYIHTTLERLKVQREAL 238
                 89************************************98655444 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.62
       IFT57 140 eddaelelekveeeelik 157
                 ++d e + ek+e++++++
  CCE31063.1 342 DEDLEQSIEKMEKDIMFH 359
                 335666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1138  (0.0634726); expected 358.6 (0.02)
Passed bias filter:                      669  (0.0373138); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2627.78
//
Query:       CCE31064.1  [L=589]
Description: probable cAMP-dependent protein kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-72  243.8   0.0    2.7e-72  243.3   0.0    1.2  1  Pkinase      Protein kinase domain
    3.2e-37  128.2   0.0    5.5e-37  127.5   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
    2.9e-08   33.4   0.0    5.2e-08   32.6   0.0    1.4  1  Kinase-like  Kinase-like
  ------ inclusion threshold ------
       0.11   12.5  35.3       0.18   11.8  35.3    1.3  1  TFIIA        Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.3   0.0   5.9e-76   2.7e-72       1     264 []     277     532 ..     277     532 .. 0.94

  Alignments for each domain:
  == domain 1  score: 243.3 bits;  conditional E-value: 5.9e-76
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 +e l++lG+GsfG+V  + +k++++ +A+K++kk +  k+k+ +++  E ++l  +khp++++l+++f++ ++ly+v+++veggel++ll+++g +++ 
  CCE31064.1 277 FEILRTLGTGSFGRVHLVQSKHNQRFYAIKVLKKAQVVKMKQvEHTNDERRMLSDVKHPFLITLWGTFQDWRSLYMVMDFVEGGELFSLLRKSGRFPNP 375
                 57899************************************99******************************************************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                  ak++a++   +leylHsk+ii+rDlKpeN+L+d++g+lKitDFG+ak++  ++   + +gt++YlAPEv+++++y k+vD+WslG+++ye+l+g +pf
  CCE31064.1 376 VAKFYAAEATLALEYLHSKNIIYRDLKPENLLLDRHGHLKITDFGFAKRVPDKT--WTLCGTPDYLAPEVVSNKGYNKSVDWWSLGILIYEMLCGYTPF 472
                 **************************************************9975..******************************************* PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.....HHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.....aeellqhpyl 264
                 +++ +     +++++      il   k  ++ ++ i+ +a++ll++l++ d +kRl+      +++++hp++
  CCE31064.1 473 WDSGSPM---RIYEN------IL---KGRVKYPQYINADAQHLLERLITADLTKRLGnlyggSQDVKNHPWF 532
                 *333333...33333......33...45789999***********************99999*********8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.5   0.0   1.2e-40   5.5e-37       2     249 ..     278     515 ..     277     517 .. 0.89

  Alignments for each domain:
  == domain 1  score: 127.5 bits;  conditional E-value: 1.2e-40
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTT..SSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkee..ateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  e+ ++lG G+fG+V+  + k    +++   a+K+lk+    + ++ e+  +e ++++++khp ++ l g   + ++l++v+++v+gG+L + Lrk+  
   CCE31064.1 278 EILRTLGTGSFGRVHLVQSK----HNQRFYAIKVLKKAqvVKMKQVEHTNDERRMLSDVKHPFLITLWGTFQDWRSLYMVMDFVEGGELFSLLRKS-- 369
                  67899**********99999....666677888886541145555778888********************************************8.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvll 195
                   ++       +a++   ++eyL+sk+++ rdl   N Ll+++ + ki+DfG a+++       k+ +      ++apE++++k ++++ D Ws G+l+
   CCE31064.1 370 GRFPNPVAKFYAAEATLALEYLHSKNIIYRDLKPENLLLDRHGHLKITDFGFAKRV-----PDKTWTLCGTPDYLAPEVVSNKGYNKSVDWWSLGILI 462
                  7777777778999999****************************************.....333444556679************************* PP

                  HHHHTTSSGTTTTS.HHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 196 wEiftlgespypgl.kneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                  +E+++ g +p+++  ++++++e++ +g r++ p++++++ ++l+++  ++d ++R
   CCE31064.1 463 YEMLC-GYTPFWDSgSPMRIYENILKG-RVKYPQYINADAQHLLERLITADLTKR 515
                  ****9.*******999*******9876.8999*******9999999999998888 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.2e-11   5.2e-08     158     281 ..     389     508 ..     352     515 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.2e-11
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPl.tla 253
                   +L++k ++  +++++nllld++g l++++f+   r+ +k      ++  +  pE+++++ gy++        ++d W lG+ iy + c + P+ +  
   CCE31064.1 389 EYLHSKNIIYRDLKPENLLLDRHGHLKITDFGFAKRVPDKTWTlCGTPD-YLAPEVVSNK-GYNK--------SVDWWSLGILIYEMLCGYTPFwDSG 476
                  79**********************************9999985355555.5556888884.4555........89******************93444 PP

  Kinase-like 254 teeakeewkfklckkipekv....kaLlkkfL 281
                   +  + e ++k  +k p+ +    + Ll++++
   CCE31064.1 477 SPMRIYENILKGRVKYPQYInadaQHLLERLI 508
                  55556666777666777766222134555555 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  35.3     4e-05      0.18      54     257 ..      45     258 ..      10     339 .. 0.38

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4e-05
       TFIIA  54 eaqspqfvlqlpqslkqalqasaaaasqapastsqslpslvipagksvqslta..........nssaataatfslpakleppvqipagvtlqtasg... 139
                    +++  + ++ s++q +++ a++asqa+ +++  ++++ +++g                    +a t+++ s+pa++++p+q+      +   +   
  CCE31064.1  45 A--AASPSTPSDRSIHQVSASRASHASQASRASQVGMAQIPAKTG-------GggvhvgggslPGAAPTHTSSSVPASSQYPQQMNPANDVPREGPsia 134
                 1..111122222333333332222223333333333333333333.......03333345678666688888999999998888866333333333223 PP

       TFIIA 140 qlykvnvqasgaqqia..aqplqqvvqq...............sqgsaaqssvaalqaqsqqaqalaepqqqlekq......qqqqqqqqqqqqqqqvq 215
                 +      +a g q+++  ++ ++q  q+               s+++a   ++a++q+q++q+qa ++p +q +++      q   qqq qq +  q+ 
  CCE31064.1 135 N------HADGSQNLLtiSNLIHQP-QNgacdnnnnnnnylptSYNPAV-LAAAPMQQQQRQQQAYPQPTMQSHQNaghspdQ---QQQYQQYHHYQQP 222
                 0......333333332002333333.22111111111111222333332.233334444344444444444422223322211...1111111111222 PP

       TFIIA 216 qqqqe........esqqaqqasqeqvagsqvessqtdgaedaleeespv..l 257
                 q+qq+        +                ++ +q++ +++ l++ ++   +
  CCE31064.1 223 QDQQQlphphphpH----------------PQHPQQQLPQQVLQHPEQRihH 258
                 22222222222221................3333333333333322222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1266  (0.0706119); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 3914.63
//
Query:       CCE31065.1  [L=293]
Description: related to vesicular integral-membrane protein VIP36 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-63  212.5   0.0    6.2e-63  212.2   0.0    1.1  1  Lectin_leg-like  Legume-like lectin family
    1.1e-05   25.1   0.0     0.0022   17.6   0.0    2.1  1  Lectin_legB      Legume lectin domain


Domain annotation for each model (and alignments):
>> Lectin_leg-like  Legume-like lectin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.2   0.0   6.9e-67   6.2e-63       4     227 ..       6     226 ..       3     229 .. 0.94

  Alignments for each domain:
  == domain 1  score: 212.2 bits;  conditional E-value: 6.9e-67
                      EGGGECCCTSCTCTTSSBTTEEEEET-EEE.SSEEEEE-SSTTEEEEEEESS-BEESSEEEEEEEEEESS--SS-S-EEEEEEESSSSSCCSBT CS
  Lectin_leg-like   4 krehslkkPylgqgskalpnWeyggsaild.snqirltsdeqskkGslwtkspvaleswevevsFrvtgseselegdglaiwytsergkegpvF 96 
                      +r hs ++Pyl + +++  + e+gg+a +  + +irltsd+ s++G+l+++ p++  +wevev+F++ g+ ++l gdg+a+w t+erg+ gpvF
       CCE31065.1   6 LRTHSIQQPYLDTDMQSR-WFEFGGDALIRtDSYIRLTSDLPSQSGWLFSRVPLTATNWEVEVEFQISGK-HQLYGDGFAMWITKERGQMGPVF 97 
                      789*********997776.99******987689*************************************.88********************* PP

                      TB-SS-EEEEEEEE-S-TSCTTTSS-SSEEEEEEEESSC---GGGTTTTTESEEEE-.--BTESSEEEEEEEEETTEEEEEEETSCCSCCCTTE CS
  Lectin_leg-like  97 gskdkfdGlailldtydndngpdkknkptisamlndgsleydhekdgkaqelasCta.dfrnkdvetlikikYdknaltvlidsgllenkndyk 189
                      gs d+f+Gl+i++dty+n++++   ++p+i+am +dg+++y+++ dgk+ ela+C+a + r  +v+t+++++Y +  +++  d  + ++++++ 
       CCE31065.1  98 GSVDRFEGLGIFVDTYKNNRPG--VVFPYIMAMHGDGQKSYNKNDDGKDAELAGCSArGIRHASVPTKLRLTYIQ-DKQLKLDLQY-REEDEWT 187
                      ********************88..6*******************************989**************97.5667777666.999**** PP

                      EEEEESS.EE--SSBEEEEEEEESSSGGEEEEEEEEEEE CS
  Lectin_leg-like 190 lCfqvke.velPtgyyfgvsaatgdlsdnhdvlsllllq 227
                       Cf v++  ++P+  y+g+sa+tg+lsdnhd++s+ + +
       CCE31065.1 188 SCFVVDKpPQIPNIAYLGFSAETGELSDNHDIISVSTKN 226
                      *****98469************************98765 PP

>> Lectin_legB  Legume lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.4e-07    0.0022      16     234 ..      25     225 ..      18     238 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.4e-07
  Lectin_legB  16 ltlegdAsvsasgllqLtnktsnssvGralYkkplkLwdkssgnvasFstsFvfaIssskssssgdGlAFflaps.....pslpaasagqyLGLfnst 108
                  + + gdA +  ++ ++Lt++  + ++G+ +  + ++L       +++++++  f+I s k++ +gdG+A+ ++++     p + + +  + LG+f +t
   CCE31065.1  25 FEFGGDALIRTDSYIRLTSDLPS-QSGWLF--SRVPLT------ATNWEVEVEFQI-SGKHQLYGDGFAMWITKErgqmgPVFGSVDRFEGLGIFVDT 112
                  5678999999999****999766.889996..556666......45799*******.567799************8887756777788999****888 PP

  Lectin_legB 109 tnnssnh.......ivaVEfDtfkn.kefDipdnhvGidvnsvkSvksasaslkslslssgkkvqvwidYdsaskrlsVtlaplkeeskpkkpllsyk 198
                   +  +n+       i+a   D +k+ ++ D +++   +   s +  ++              +++   +Y +  k+l+  l+ ++e   + + +  + 
   CCE31065.1 113 YK--NNRpgvvfpyIMAMHGDGQKSyNKND-DGKDAELAGCSARGIRH-----------ASVPTKLRLTYIQ-DKQLKLDLQ-YRE---EDEWTSCFV 191
                  64..23334445555566666665532223.33333333333333333...........2335566666665.566777776.444...244556667 PP

  Lectin_legB 199 vdLskvlpeekvyvGFSastgsvsveahyilsWsFs 234
                  vd    +p+  +y GFSa tg++s  +h i+s s +
   CCE31065.1 192 VDKPPQIPN-IAYLGFSAETGELS-DNHDIISVSTK 225
                  777777884.79999999999977.99999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2322.57
//
Query:       CCE31066.1  [L=85]
Description: related to mitochondrial import inner membrane translocase subunit TIM13 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-22   77.9   0.9      4e-22   77.6   0.9    1.1  1  zf-Tim10_DDP  Tim10/DDP family zinc finger


Domain annotation for each model (and alignments):
>> zf-Tim10_DDP  Tim10/DDP family zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.9   2.3e-26     4e-22       1      62 [.      12      72 ..      12      74 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 2.3e-26
  zf-Tim10_DDP  1 qqleqeqqvanaqelvnkltekCfkkCigkypgssLdsseesCldnCvdryldvsnlvskrl 62
                  +q+ +e+++ana+ l++kl e+Cf+kC++k pg+sL+s+e++C++ C+++y+ ++n v+ ++
    CCE31066.1 12 KQVLAEANLANARVLIEKLQESCFDKCVPK-PGTSLSSGEQTCMTTCMEKYMAAWNQVNVAY 72
                  5899************************99.***************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 661.54
//
Query:       CCE31067.1  [L=417]
Description: uncharacterized protein CPUR_04918 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-38  131.7  25.5    1.4e-38  131.7  25.5    3.0  3  DUF2040   Coiled-coil domain-containing protein 55 (DUF2040)
  ------ inclusion threshold ------
       0.85   10.3   4.5        6.1    7.6   0.7    3.0  2  PMC2NT    PMC2NT (NUC016) domain


Domain annotation for each model (and alignments):
>> DUF2040  Coiled-coil domain-containing protein 55 (DUF2040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7  25.5   1.5e-42   1.4e-38       2     118 ..     116     228 ..     115     231 .. 0.93
   2 ?   -3.1   0.1       0.9     8e+03      50      69 ..     238     257 ..     233     271 .. 0.48
   3 ?   -7.4  20.0         2   1.8e+04      35     101 ..     344     411 ..     316     416 .. 0.63

  Alignments for each domain:
  == domain 1  score: 131.7 bits;  conditional E-value: 1.5e-42
     DUF2040   2 kkeaekaleeDpsvydYDevYDslkeakekkkakkkeekkerkpkYienLlkaaekRkrereraeerklqkereaegdefadkekFVTsaYkkkleelk 100
                 kk+ ++a+e D++vy+YD+vYDslk +k++++   ke+ +erkpkY+++Ll+aae+Rkr+  +aee+k++++reaeg+efadkekFVT+aYkk++ee+k
  CCE31067.1 116 KKNSQAATELDSNVYEYDSVYDSLKPKKKEAA---KED-AERKPKYMKSLLQAAEVRKRDALIAEEKKIARDREAEGEEFADKEKFVTEAYKKQQEENK 210
                 78999********************9877554...334.479********************************************************* PP

     DUF2040 101 kleeeekrreeeeekkdv 118
                 +leeeekrreeee+kk++
  CCE31067.1 211 RLEEEEKRREEEEAKKNE 228
                 **************9986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.9
     DUF2040  50 nLlkaaekRkrereraeerk 69 
                 +Ll   e R+ e   a  +k
  CCE31067.1 238 KLLDRDEARHSEIVNAAVKK 257
                 44444444444433333333 PP

  == domain 3  score: -7.4 bits;  conditional E-value: 2
     DUF2040  35 kkkeekkerkpkYienLlkaaekRkrereraeer...klqkereaegdefadkekFVTsaYkkkleelkk 101
                  kk+  +er+ + +e+ l+++ kR re e a+     ++ k r+ e d  + ke++     kk  ee kk
  CCE31067.1 344 GKKQAMRERQTRMMEEQLEESLKRSREAEDAQREeveRASKSRKTETDILSAKERYLAR--KKAAEEAKK 411
                 34445568888888888888888888777665540114556788888888888888753..555555544 PP

>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.7   0.00068       6.1      17      57 ..     135     181 ..     111     222 .. 0.81
   2 ?    3.1   0.2     0.018   1.6e+02      25      64 ..     236     275 ..     232     290 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00068
      PMC2NT  17 fyrsldpefaksldeqserllslinsllklaaskseisas......s 57 
                  y sl+p+ +++ +e++er  + ++sll++a+ ++++  +       
  CCE31067.1 135 VYDSLKPKKKEAAKEDAERKPKYMKSLLQAAEVRKRDALIaeekkiA 181
                 589999*****************************997765555441 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.018
      PMC2NT  25 faksldeqserllslinsllklaaskseisassklededd 64 
                 ++k ld++++r  +++n+ +k a++ s +++ +++++  d
  CCE31067.1 236 YKKLLDRDEARHSEIVNAAVKKAKEGSTTEKGPEDDEDPD 275
                 67889**********************9988744433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2801  (0.156227); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.48
# Mc/sec: 2614.51
//
Query:       CCE31068.1  [L=251]
Description: uncharacterized protein CPUR_04919 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-05   23.5   0.0    7.3e-05   22.7   0.0    1.3  1  LysM      LysM domain
  ------ inclusion threshold ------
      0.023   14.5   0.0      0.042   13.7   0.0    1.4  1  UBA_4     UBA-like domain


Domain annotation for each model (and alignments):
>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   8.2e-09   7.3e-05       7      44 .]     118     155 ..     118     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 8.2e-09
                 --HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM   7 DTLwsIAkrygitveklleaNnlsspdkifpGqkLkiP 44 
                 D++ s++ ryg++  +l++aNnl s+++++  ++++iP
  CCE31068.1 118 DSVTSLSFRYGVPAAALRRANNLTSDHLLWGRRTICIP 155
                 99*************************9999999**99 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.7e-06     0.042       2      36 ..     180     215 ..     179     216 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.7e-06
       UBA_4   2 eliaqFqaiTGade.ekArqlLeannWdLerAisly 36 
                 ++i++F+  + +++ + A+ +Le+++ dL + +++y
  CCE31068.1 180 NKIRRFMTACKVSDyDIAVLYLEQSHYDLGASVEAY 215
                 79********99656******************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1937.49
//
Query:       CCE31069.1  [L=1212]
Description: related to splicing factor 3B subunit 3 (spliceosomal protein sap130) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-157  524.9   0.0   6.2e-157  523.1   0.0    1.7  2  MMS1_N    Mono-functional DNA-alkylating methyl methanesulfon
   6.3e-100  334.6   0.0    2.4e-99  332.7   0.0    2.0  2  CPSF_A    CPSF A subunit region
  ------ inclusion threshold ------
      0.077   12.5   3.5       0.58    9.7   0.4    2.7  2  UBM       Ubiquitin binding region


Domain annotation for each model (and alignments):
>> MMS1_N  Mono-functional DNA-alkylating methyl methanesulfonate N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  523.1   0.0    1e-160  6.2e-157       1     489 []      82     610 ..      82     610 .. 0.97
   2 ?   -1.2   0.0       0.1   6.1e+02     100     228 ..     933    1053 ..     924    1082 .. 0.55

  Alignments for each domain:
  == domain 1  score: 523.1 bits;  conditional E-value: 1e-160
      MMS1_N   1 DlLvvgsdsgelvflsynpeknqfetvhshetlgksgsrrsqpGqylavDPkgraiavsayekvflvyslkkkeilnr..ealll.ssplearksegvi 96 
                 D+L++++dsg++++++y p +n+f + h  et+gksg+rr  pG+yla+DPkgra+ +++ ek +lvy      +lnr  +a+l+ ssplea+k+  ++
  CCE31069.1  82 DYLILATDSGRITIVEYLPAQNRFSRLH-LETFGKSGVRRVIPGEYLACDPKGRACLIASTEKNKLVY------VLNRspQAELTiSSPLEAHKPGVLV 173
                 9***************************.***************************************......999999999**************** PP

      MMS1_N  97 lsmvFldpgykeednpiialle.......qdrrg......kteltlyewdlglnlvrkisktsepkknldsganlLiplpk....pggvlVcgetiity 178
                 ++m++ld+gy+   np++a+le       qd +g      +t+l++ye+dlgln+v++  k+sep   +d++a++L ++p+    p+gvlVcge++ity
  CCE31069.1 174 IAMTALDVGYA---NPVFAALEmdyseadQDATGqaleevETQLVYYELDLGLNHVVR--KWSEP---VDPTASILFQVPGgndgPSGVLVCGEESITY 264
                 **********6...9*******98888776666699999*******************..*****...*************99999************* PP

      MMS1_N 179 kdildqedirkkswarPrrekatn.......fv..aweklds....fffllatedGdLylleiekdeds....gkvvtsislkyfdtvsvasalvilks 260
                 +++ +q+++r+   ++Prr++at+       +v  +++kl++    fffll+tedGdL++++i+++ed+    +++v+ +++kyfdtv+vas+l+ilks
  CCE31069.1 265 RHS-NQDAFRV---PIPRRKGATEdplrkrvIVsgVMHKLKGsagaFFFLLQTEDGDLFKVTIDMVEDEegnpTGEVRRLKIKYFDTVPVASSLCILKS 359
                 ***.7777***...***************975589******************************7777788999************************ PP

      MMS1_N 261 gfLfvasefGdgqlyqieargedd............................knleliqtldNlaPilDfkvvkesdlasegqdqiytcsGagkrgsLr 331
                 gfL+vas+fG+  +yq+e++g+dd                            +nl l++++++++P++D+kv+   +l++e+ +qiyt++G+g r+++r
  CCE31069.1 360 GFLYVASQFGNFSFYQFEKLGDDDdetefssddfpvdpqasydpvyfyprpaDNLALVESVPSMNPLMDCKVA---NLTGEDAPQIYTVCGNGARSTFR 455
                 **********************99*************************************************...*********************** PP

      MMS1_N 332 elRsGieveelavseepgspitgvWtlklssedeyddylvlSfvneTlvlsidgdgeveevtedsglllsvpTLaagnlgdgslvQVtpngirliradk 430
                  lR+G+ev+e++ se+pg p ++vWtlkl+++++yd+y+vlSf n Tlvlsi g+ +veev+ dsg+++svpTLaa+ lgd+ l+QV+p+gir+ir+  
  CCE31069.1 456 MLRHGLEVNEIVASELPGIP-SAVWTLKLNRGEQYDAYIVLSFTNGTLVLSI-GE-TVEEVS-DSGFSTSVPTLAAQLLGDDGLIQVHPKGIRHIRNG- 549
                 ********************.*******************************.*9.*****9.*********************************98. PP

      MMS1_N 431 rvsewkppngksiiaaaangeqllvalsgrelvyfeld....lieevekkdleslsevsclsl 489
                  v+ew++p+++si+aa++n +q+++als++e+vyfe+d    l e+ ekk++   ++v+clsl
  CCE31069.1 550 KVNEWDAPQHRSIVAATTNAHQVAIALSSGEIVYFEMDtdgsLAEYDEKKEMF--GTVTCLSL 610
                 899**********************************77899**********9..******96 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.1
      MMS1_N  100 vFldpgykeednpiialle.qdrrg.....kteltlyewdlglnlvrkisktsepkknldsganlLiplpkpgg.vlVcget....iitykdildqe 185 
                  +F++++  e  +p +all  q   +      ++l++y + + + l+++++         +  ++ +++l+ +g+ ++V   +    ++tyk   +  
  CCE31069.1  933 EFIHKTKIE--EPPMALLPfQG--KllagvGKTLRIYDLGMRQMLRKAQT---------EVASHQIVSLNTQGSrIIVGDVQqgvtYVTYKPTTN-- 1014
                  677777765..34444443121..13354446677777776665444433.........234567888888444666665555555666666522.. PP

      MMS1_N  186 dirkkswarPrrekatnfv.awekldsfffllatedGdLyllei 228 
                      k ++   ++  t ++ ++  +d   +  +++ G+++ +  
  CCE31069.1 1015 ----KLIPFVDDS-TTRWItCTTMVDYESVAGGDKFGNIFIVRC 1053
                  ....222222222.222333555555556666666666666665 PP

>> CPSF_A  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.32   1.9e+03      46      97 ..     561     609 ..     552     658 .. 0.62
   2 !  332.7   0.0    4e-103   2.4e-99       1     321 [.     856    1178 ..     856    1179 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.32
                 -EEEEEEE---SSS--E.EEEEEEEEEE-SS--EEEEEE.EEEEEES----EE CS
      CPSF_A  46 llvVGtafnlgedpaarsGrilvfeiievpetnrkLklv.hkeevkgavtala 97 
                  +v +t+   +  +a +sG i  fe++ ++    +L +   k+e+ g+vt+l+
  CCE31069.1 561 SIVAATTNAHQVAIALSSGEIVYFEMDTDG----SLAEYdEKKEMFGTVTCLS 609
                 566777777777777777999999998864....3444415667777777765 PP

  == domain 2  score: 332.7 bits;  conditional E-value: 4e-103
                  B-EEEEE-T..TT..-EEEEE--TTEEEEEEEE--B-SSTTT---B--EEEEEEE---SSS--E..EEEEEEEEEE-SS--EEEEEEEEEEEES--- CS
      CPSF_A    1 assiklvdpiske..eidsleLeenEavlsvksvelessettkekkellvVGtafnlgedpaars.GrilvfeiievpetnrkLklvhkeevkgavt 94  
                  as+i+++dp+++e  +++++++e+nEa++s++ v + s+ +   ++++l+VGt+++   +p++ s  +i+v++++ +    r+L+++hk+++++++ 
  CCE31069.1  856 ASCINVIDPTDEEpqVLQTVDFENNEAAVSAAIVPFASQ-D---NESFLIVGTGKDVIVNPRSFSeAYIYVYRFQAD---GRELEFIHKTKIEEPPM 945 
                  69*********999555*******************954.4...69***************55559**********7...56*************** PP

                  -EEEETTEEEEE-SSEEEEEEE-TTS-EEEEEEEE-SS.-EEEEEEETTEEEEEESSS-EEEEEE-SSS--EEEEEEESS---EEEEEEE--SSSEE CS
      CPSF_A   95 alaefqGrllvgvgqkvrvydlgedktLlrkafldtql.yvvslkvlgnriivgDlmkSvtfveydeenyklilfardtqkrwvtaaeflvdgedtv 190 
                  al +fqG+ll+gvg+++r+ydlg ++ +lrka+++++   +vsl+++g+riivgD++++vt+v y+   +kli+f +d ++rw+t+++++ d+ ++v
  CCE31069.1  946 ALLPFQGKLLAGVGKTLRIYDLGMRQ-MLRKAQTEVAShQIVSLNTQGSRIIVGDVQQGVTYVTYKPTTNKLIPFVDDSTTRWITCTTMV-DY-ESV 1039
                  **************************.*******99999****************************7777*******************.**.8** PP

                  EEEETTSEEEEEE--TTSGGGTTTT..................EEEEEEEEE-SS----E...EEEE.SSS--S-EEEEEE-TTS-EEEEEE.--HH CS
      CPSF_A  191 lvaDkfgnlfvlrydpeasessdgdp.................rleeraefhlgeivtslrkgslvpgeaesssspqllyatldGsigllvPlisee 270 
                  +++Dkfgn+f++r++ +ase++d+++                 r++ +++f+ ++i+ts+ k+slv g++e+     ll+++l+G+ig+++Pl+s+e
  CCE31069.1 1040 AGGDKFGNIFIVRCPSKASEEADEEQsgvhlmnarnylhgtsqRVDLMCHFYAQDIPTSMAKTSLVVGGQEV-----LLWSGLMGTIGVFIPLVSRE 1131
                  ************************************************************************.....******************** PP

                  HHHHHHHHHHHHHHHS--SSS--HHHHS---..----.---EEHHHHHHHH CS
      CPSF_A  271 eyrrlqaLqqqLrkelkhlgGldhrafRsyyspkseevkgviDgdllerfl 321 
                  + +++q+L+q+Lr+e  +l+G+dh+++R+yy+p    vkg+iDgdl+er++
  CCE31069.1 1132 DADFFQSLEQHLRTEDAPLAGRDHLMYRGYYAP----VKGIIDGDLCERYT 1178
                  *********************************....*************7 PP

>> UBM  Ubiquitin binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.4   9.6e-05      0.58      15      28 ..     817     830 ..     817     833 .. 0.93
   2 ?    2.6   0.2     0.016        96      10      24 ..    1132    1146 ..    1125    1146 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9.6e-05
         UBM  15 aaLPpdLReEVLaq 28 
                 ++LPpdLR++ La+
  CCE31069.1 817 NTLPPDLRAQLLAD 830
                 59**********98 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.016
         UBM   10 DpsFLaaLPpdLReE 24  
                  D++F+ +L  +LR E
  CCE31069.1 1132 DADFFQSLEQHLRTE 1146
                  99***********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 8868.66
//
Query:       CCE31070.1  [L=397]
Description: related to MSS51 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-28   98.7   5.6    2.4e-28   98.0   5.6    1.4  1  zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
    0.00095   19.2   0.1     0.0019   18.3   0.1    1.5  1  zf-MYND   MYND finger
  ------ inclusion threshold ------
      0.048   14.1   1.0       0.12   12.9   1.0    1.7  1  zf-C2H2   Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   5.6   4.1e-32   2.4e-28       2      57 .]       7      81 ..       6      81 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 4.1e-32
    zf-Mss51  2 CPvpkhkqt...................apkhvdfeCpdCGiptycseehwedDyeahleicdtLrqvnedeHDL 57
                CP+p+hk t                   +p+ vdfeCpdCG+p+ycs+ehw+d+ye+hleicdtLrq+ned+HDL
  CCE31070.1  7 CPHPDHKPTklattapradgstegsgsmPPALVDFECPDCGLPVYCSKEHWMDHYEEHLEICDTLRQINEDDHDL 81
                **************************************************************************9 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   3.1e-07    0.0019      12      38 .]      42      68 ..      30      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.1e-07
                E-TTTS-SEESSHHHHHHCHHHHCCCH CS
     zf-MYND 12 kCagCksvfYCskeCqradwksHkteC 38
                 C+ C    YCske+   ++++H + C
  CCE31070.1 42 ECPDCGLPVYCSKEHWMDHYEEHLEIC 68
                8**********************9999 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.0     2e-05      0.12       1      23 []      41      64 ..      41      64 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
                EEETTTT.EEESSHHHHHHHHHCC CS
     zf-C2H2  1 ykCpdCg.ksFkrksnLkrHirtH 23
                ++CpdCg  ++++k++ + H+  H
  CCE31070.1 41 FECPDCGlPVYCSKEHWMDHYEEH 64
                89******************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2970.53
//
Query:       CCE31071.1  [L=558]
Description: uncharacterized protein CPUR_04922 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-44  151.3   1.5    5.2e-44  150.4   1.5    1.5  1  PXA       PXA domain
     0.0017   18.9   0.0     0.0099   16.4   0.0    2.2  2  Nexin_C   Sorting nexin C terminal
  ------ inclusion threshold ------
      0.057   13.1   0.0        9.2    5.9   0.0    2.4  2  DUF3348   Protein of unknown function (DUF3348)


Domain annotation for each model (and alignments):
>> PXA  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4   1.5   8.7e-48   5.2e-44       2     180 ..      89     269 ..      88     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: 150.4 bits;  conditional E-value: 8.7e-48
         PXA   2 peldeelhellalilrdfVlsWYskissdeeFptevrsilrsviralanrlkkvDlaqllltrlldlltshlrdyrqaeekvkskkaeeesdldlaakf 100
                 +++d +l+++la++lr+fV+ WYski++de+F+ e+ +++++++ral++r+++vDl +lll++++++l++h++ yr+ +++   +      + + ++++
  CCE31071.1  89 NDVDLQLYAFLAIVLREFVQAWYSKITPDETFVAEIVHVIAHCTRALEQRIRAVDLENLLLNEIPEVLNKHIDIYRSTHRDHLAQ----TVQVNGREAY 183
                 689************************************************************************9988855444....36899999** PP

         PXA 101 falephpalsavlrd.....ieeskeaelaylrslverlLslllppedlesetvrtlvreilanvvlkpll.eklsdPdfinqlii 180
                 +al+p p ls+ +       ++++ ++e+ay + lv+++L +llp+edl+++++++lv++i++++++++++ +k s+P+ +++ i 
  CCE31071.1 184 HALWPLPFLSPAPIPgdplsTAKQLNKEAAYRQLLVQAVLTVLLPTEDLQNPCLTALVSQIFSELIIGNVItNKASQPWLLYEAIC 269
                 *******99865544889998888999********************************************************996 PP

>> Nexin_C  Sorting nexin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.65   3.9e+03      48      82 ..     184     220 ..     135     229 .. 0.59
   2 !   16.4   0.0   1.7e-06    0.0099      20      91 ..     414     486 ..     390     490 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.65
     Nexin_C  48 dalWPdg..eskaesaperseeeklrtraearklLle 82 
                  alWP    +++  +  + s++++l+++a+ r+lL++
  CCE31071.1 184 HALWPLPflSPAPIPGDPLSTAKQLNKEAAYRQLLVQ 220
                 5566432332333334456666666666666666666 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.7e-06
     Nexin_C  20 dtierwlkekiekltseeavaslikklrdalWPdg.eskaesaperseeeklrtraearklLlellpdalvsv 91 
                 + ++r+l  +i+   s +++ s+++ lr +l+P +   +++  p+ s++e +++r++a + L +++p  ++++
  CCE31071.1 414 GVLDRLLSHQIQLCLSASQLPSILRTLRGSLFPHNaPGTSSMFPPSSDAELRALRRRAATALWTMIPPSVGRM 486
                 7899*********999****************97752333444789999999************999877765 PP

>> DUF3348  Protein of unknown function (DUF3348)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0015       9.2     163     206 ..     135     180 ..     102     207 .. 0.78
   2 ?    4.6   0.0    0.0036        22     155     182 ..     408     437 ..     403     450 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0015
     DUF3348 163 meraLaar..ersllaavPalLekrFerlrkaeqaalaeaeaaaea 206
                 +e+ + a   e+ ll ++P +L+k+   +r+++++ la++ + + +
  CCE31071.1 135 LEQRIRAVdlENLLLNEIPEVLNKHIDIYRSTHRDHLAQTVQVNGR 180
                 45544432227789*********************99998655444 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0036
     DUF3348 155 rLAalDavmeraLaarersllaa..vPalL 182
                 r+A+lD v++r L+++ + +l+a  +P +L
  CCE31071.1 408 RIAKLDGVLDRLLSHQIQLCLSAsqLPSIL 437
                 99****************999752256555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4154.06
//
Query:       CCE31072.1  [L=557]
Description: uncharacterized protein CPUR_04923 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-11   43.4   0.3    1.5e-10   40.9   0.2    2.2  2  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
    1.5e-10   40.6   0.1    2.4e-10   39.9   0.1    1.4  1  CENP-B_N     CENP-B N-terminal DNA-binding domain
     0.0027   17.4   0.1     0.0059   16.3   0.1    1.6  1  HTH_38       Helix-turn-helix domain
     0.0091   15.8   0.2       0.13   12.1   0.0    2.5  2  HTH_23       Homeodomain-like domain
  ------ inclusion threshold ------
      0.014   15.3   0.0       0.04   13.8   0.0    1.8  1  MarR_2       MarR family
       0.13   12.1   0.0       0.28   11.0   0.0    1.5  1  LacI         Bacterial regulatory proteins, lacI family
       0.13   12.2   0.0       0.41   10.6   0.0    1.8  1  MarR         MarR family
        4.5    6.0   5.3         16    4.2   3.0    2.0  2  Nucleo_P87   Nucleopolyhedrovirus capsid protein P87


Domain annotation for each model (and alignments):
>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.2   6.7e-14   1.5e-10       1      64 [.     218     281 ..     218     283 .. 0.93
   2 ?   -0.4   0.0      0.56   1.2e+03      17      44 ..     476     502 ..     472     508 .. 0.73

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 6.7e-14
                  THHHHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHTS--X CS
  HTH_Tnp_Tc5   1 spelEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRhglkr 64 
                  +p+ ++ L ++ir++r++gi i++e i e+A+ +a  + + + +   + ++Wl++Fk++h++++
   CCE31072.1 218 NPDFDRTLSNYIRRQRQNGIEIRDEDIMEQARLFAHATGNQDATLGALTSSWLQKFKQKHRISK 281
                  6999*******************************77788889999999************986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.56
                  -CT---SCHHHHHHHHHHHHHSSSCT-T CS
  HTH_Tnp_Tc5  17 ergipitgelirekAqelaslaadlgep 44 
                  ++ +++t+e  r++A  l+s   ++ ++
   CCE31072.1 476 ASPVSPTQEDARRAADTLLSY-VQNHGE 502
                  66789***********99855.444444 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1   1.1e-13   2.4e-10       2      49 ..     149     198 ..     148     202 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.1e-13
                 SSSSS--HHHHHHHHHHHHCTT..-HHHHHHHHT--CCHHHHHHHCHHHH CS
    CENP-B_N   2 kkRrsLTlreKievIqrleege..SkaelarrfnvpestlsdilknKkkl 49 
                 k+R+ L  ++K +++q+ e+++  + a+++r+f+v +st+s++l nK++ 
  CCE31072.1 149 KSRKTLSTEQKRRMCQYHEDNPgtRQADIGREFGVERSTVSKVLRNKDEY 198
                 79*********************************************975 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.6e-06    0.0059       6      42 ..     156     193 ..     150     195 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.6e-06
      HTH_38   6 sleeReeIerl.laeGlslreIArrLgrspsTIsRElk 42 
                 + + R+++++   + G  +++I+r+ g+ +sT+s+ l+
  CCE31072.1 156 TEQKRRMCQYHeDNPGTRQADIGREFGVERSTVSKVLR 193
                 567777787775578999******************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   5.8e-05      0.13      16      39 ..     169     193 ..     155     197 .. 0.83
   2 ?    0.7   0.1      0.22     5e+02      32      47 ..     223     238 ..     222     239 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.8e-05
      HTH_23  16 e.GlsvreIAreLgvsrrTvyrwlk 39 
                 + G ++++I re+gv r+Tv+++l+
  CCE31072.1 169 NpGTRQADIGREFGVERSTVSKVLR 193
                 378899****************998 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.22
      HTH_23  32 rTvyrwlkryreeGle 47 
                 rT++++++r r++G+e
  CCE31072.1 223 RTLSNYIRRQRQNGIE 238
                 8********9999987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.8e-05      0.04      16      43 ..     168     193 ..     165     194 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
                 CTTTSEEEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2  16 rrpgrdltvgelarrlglsksavsrilk 43 
                 ++pg   +++++ r++g+++s+vs++l+
  CCE31072.1 168 DNPG--TRQADIGREFGVERSTVSKVLR 193
                 5777..8******************997 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013      0.28       4      24 ..     176     196 ..     175     203 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                 HHHHHCTS-HHHHHHHCTTSS CS
        LacI   4 DVArlAGVSkaTVSrvLnnke 24 
                 D+ r+ GV  +TVS+vL+nk+
  CCE31072.1 176 DIGREFGVERSTVSKVLRNKD 196
                 888899*************93 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00018      0.41      14      39 ..     168     193 ..     166     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
                 HSTTEEHHHHHHHHTS-HHHHHHHHH CS
        MarR  14 eqgplsvseLakklgvskstvtrvld 39 
                 ++++ +++++++ +gv++stv++vl+
  CCE31072.1 168 DNPGTRQADIGREFGVERSTVSKVLR 193
                 57899*******************98 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   3.0    0.0073        16     303     440 ..      67     218 ..      43     224 .. 0.61
   2 ?    2.9   0.2     0.017        39     236     297 ..     202     265 ..     180     315 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0073
  Nucleo_P87 303 paqtpaperslqsPeqtparrkstkmtee.slqsPaqtpawqtpattptretssdteaiksepektleeklreklp.sdlsaqssvpdkkseasavlpt 399
                 ++q+p ++   +   +++++ + ++  +  + q P+ + aw +  t+pt+ t+    ++ s+p       l  +lp +d++  ss  +k++++ +    
  CCE31072.1  67 TPQAPVQHLHQHLHLHQHQQSTMPHSAPMgHHQLPMLNTAWPSQVTSPTLATEGFSASPISPP------PLSGQLPaLDIPRSSSRAEKSRKTLS---- 155
                 333333222222222233333333333335888999999999999999998886555555553......45668897888887776666554443.... PP

  Nucleo_P87 400 ekrkRrrarklqels......................sdededssdekevDkekerkRRreeD 440
                 +++kRr  +  ++                         + de+   e+e+D+ + r+  +  +
  CCE31072.1 156 TEQKRRMCQYHEDNPgtrqadigrefgverstvskvlRNKDEYLGREQEPDHAAVRRNGKAKN 218
                 455666655544444566777777777777777777777777778888888777666555555 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.017
  Nucleo_P87 236 ese.ekavianekdldkltie.qLtdyikknnsaqfdiskhesvedvrefaktvwrakntpmae 297
                 e+e ++a ++ + + ++ + +  L++yi+++ ++ ++i  ++ +e+ r fa++  ++  t  a 
  CCE31072.1 202 EQEpDHAAVRRNGKAKNPDFDrTLSNYIRRQRQNGIEIRDEDIMEQARLFAHATGNQDATLGAL 265
                 4444444444444445555541599***************************999998876553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4057.26
//
Query:       CCE31073.1  [L=363]
Description: probable developmentally regulated GTP-binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-41  138.4   1.0    3.5e-40  136.3   0.4    2.1  2  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
    7.6e-21   74.3   0.0    2.6e-20   72.6   0.0    1.9  2  MMR_HSR1      50S ribosome-binding GTPase
    8.5e-20   70.6   0.0    1.9e-19   69.4   0.0    1.6  1  TGS           TGS domain
    3.6e-09   36.3   0.0    1.7e-08   34.1   0.0    2.0  2  FeoB_N        Ferrous iron transport protein B
     0.0002   21.5   0.1       0.05   13.7   0.0    2.5  2  Dynamin_N     Dynamin family
    0.00042   19.9   0.1        6.3    6.3   0.0    3.9  2  GTP_EFTU      Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.011   14.7   0.1      0.026   13.5   0.1    1.6  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
       0.05   13.5   0.3        4.1    7.3   0.1    2.7  3  RsgA_GTPase   RsgA GTPase
      0.059   12.7   0.0       0.09   12.1   0.0    1.3  1  AIG1          AIG1 family
       0.15   12.3   0.0        2.1    8.6   0.0    2.3  2  Roc           Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   0.4     2e-43   3.5e-40       1     106 []     185     291 ..     185     291 .. 0.98
   2 ?   -0.1   0.0      0.53   9.4e+02      31      61 ..     306     338 ..     304     350 .. 0.70

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 2e-43
  MMR_HSR1_Xtn   1 kgGikitstvkltkldeetvkkilkeykihnaevliredvtvDdlidvieg.nrvYipclyvlNKiDlisleeldelarepnsvviSaekelnldeL 96 
                   kgG++i++tv+l+++d++++k++++eyki++a+++ir+d+tvDdlidv+e  +r Yip++y+lNKiD+is+eeld l+r p+sv+iS+e+++n+deL
    CCE31073.1 185 KGGLNISHTVPLSHIDNDEIKAVMSEYKINSADITIRCDATVDDLIDVLEAkSRAYIPVVYCLNKIDSISIEELDLLYRIPHSVPISSEHGWNMDEL 281
                   69***********************************************6549******************************************** PP

  MMR_HSR1_Xtn  97 kekiweeLnL 106
                   +e++we+LnL
    CCE31073.1 282 MEAMWEQLNL 291
                   ********98 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.53
  MMR_HSR1_Xtn  31 naevlir.edvtvDdlidviegnr.vYipclyv 61 
                   +a v++r ++ tv+d+ ++i     +  ++ +v
    CCE31073.1 306 SAPVVLRsNRSTVEDFCNAIHRTIvEQFKTAIV 338
                   6778888577899*****997754234444444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   1.5e-23   2.6e-20       2      99 ..      66     162 ..      65     183 .. 0.84
   2 ?   -0.8   0.0      0.89   1.6e+03      81     114 .]     220     249 ..     154     249 .. 0.55

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 1.5e-23
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETTTTCSHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdaseeklkpldeelee 99 
                 ++++G p vGKStL+++ltg++++++++ +tT++ + g+v ++g +++++D+pG+iega++++g g+++ a+ + ++li++v+d++ + l+++ + +e+
  CCE31073.1  66 IGFIGFPSVGKSTLMSRLTGQHSEAAAYEFTTLTSVPGQVVYNGAPLQIIDLPGIIEGAKDGRGRGRQVIAVAKtCHLIFIVLDVN-KPLTDK-RVIES 162
                 89*********************************************************************99978********87.545443.33332 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.89
                 EEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  81 lvvdaseeklkpldeeleelleeakkplilvlnk 114
                 + +d   +++++l  ++ e +++a +p++++lnk
  CCE31073.1 220 IRCD---ATVDDL-IDVLEAKSRAYIPVVYCLNK 249
                 2222...223344.44444444577788888887 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   1.1e-22   1.9e-19       2      55 ..     293     361 ..     292     362 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 1.1e-22
                 EEEE.TTSSEEE......EETTB-.HHHHHHHHSTTHHHHEEEEEECS.......EEEETTSBB-SSEE CS
         TGS   2 rvyt.PdGkvpd......lprgat.veDfAykIhrslakkfiyAlVnG.......qrvgldhvLedgdv 55 
                 rvyt P+G++pd      l+++++ veDf+++Ihr+++++f+ A+V G       qrvgl+h+L+d+dv
  CCE31073.1 293 RVYTkPKGRAPDysapvvLRSNRStVEDFCNAIHRTIVEQFKTAIVYGksvkhqpQRVGLSHELDDEDV 361
                 8*****************9999888*******************************************8 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   9.4e-12   1.7e-08       3      57 ..      66     120 ..      64     151 .. 0.93
   2 ?   -0.7   0.0      0.51   9.2e+02     106     122 ..     241     257 ..     229     284 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 9.4e-12
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE---- CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGi 57 
                 + ++G p vGk+tl+ +ltg++++ + +  +t     g++ ++g  ++i+DlPGi
  CCE31073.1  66 IGFIGFPSVGKSTLMSRLTGQHSEAAAYEFTTLTSVPGQVVYNGAPLQIIDLPGI 120
                 7789**************************************************8 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.51
                 SSEEEEEETHHHHHHTT CS
      FeoB_N 106 vpvvlalnmideaekkg 122
                 +pvv +ln+id ++ ++
  CCE31073.1 241 IPVVYCLNKIDSISIEE 257
                 68899999999876554 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.1    0.0093        17       1      22 [.      66      87 ..      66     108 .. 0.84
   2 !   13.7   0.0   2.8e-05      0.05     102     146 ..     111     158 ..     103     170 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0093
                EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlged 22
                i ++G  S GKS+++  L+g++
  CCE31073.1 66 IGFIGFPSVGKSTLMSRLTGQH 87
                6789999*************97 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.8e-05
                 SEEEEE---B-SSSGTTS...HHHHHHHSTTEEEEEEEETTS-CCC-C CS
   Dynamin_N 102 gltlvDlPGldsvnkrdq...elvkeyikkadiilavtsanhdlsnse 146
                  l ++DlPG+++ +k      + v   +k +++i+ v++ n+ l++++
  CCE31073.1 111 PLQIIDLPGIIEGAKDGRgrgRQVIAVAKTCHLIFIVLDVNKPLTDKR 158
                 689*********9999999999999999***************99654 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0048       8.6       5      29 ..      65      89 ..      62     152 .. 0.90
   2 !    6.3   0.0    0.0035       6.3     120     141 ..     238     260 ..     228     290 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0048
                EEEEEESTTSSHHHHHHHHHHHTTS CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLlyktga 29
                 ig+ig    GK+TL+ rL+ ++++
  CCE31073.1 65 SIGFIGFPSVGKSTLMSRLTGQHSE 89
                689999999**********976655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0035
                 HTTTEEEEEEESCGST.HHHHHH CS
    GTP_EFTU 120 kegvpiivfiNKmDrl.kaelke 141
                 +  +p++ ++NK+D + ++el+ 
  CCE31073.1 238 RAYIPVVYCLNKIDSIsIEELDL 260
                 55677777777777775444443 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.4e-05     0.026      25      52 ..      60      86 ..      57     107 .. 0.85
   2 ?   -3.8   0.0       2.8   5.1e+03     171     205 ..     244     278 ..     241     287 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
                G-S-SEEEEEEE-TTSSHHHHHHHHHHH CS
        MeaB 25 kaGraqvvGltGvPGaGkstlvealgle 52
                ++G a  +G+ G+P +Gkstl+++l+ +
  CCE31073.1 60 RTGVA-SIGFIGFPSVGKSTLMSRLTGQ 86
                55555.59****************9866 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.8
                 EEEEE---HHHHHHHHHHHHHHHHHCSTTBTTB-- CS
        MeaB 171 iivvnkaDkkeaekaarelraaleleeekekeWrp 205
                 ++ +nk D   +e+    +r   ++  ++e++W+ 
  CCE31073.1 244 VYCLNKIDSISIEELDLLYRIPHSVPISSEHGWNM 278
                 67788888888888888888888888888888875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0023       4.1     102     124 ..      66      88 ..       6     102 .. 0.81
   2 ?   -2.1   0.0       1.7   3.1e+03      20      58 ..     145     185 ..     137     238 .. 0.59
   3 ?    3.5   0.0     0.032        58      39      65 ..     233     258 ..     218     291 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0023
                  EEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpele 124
                  + ++G   vGKStL+ +l+++++
   CCE31073.1  66 IGFIGFPSVGKSTLMSRLTGQHS 88 
                  55899999**********99754 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.7
                  EEEEESTTTT--HHHHHHHH..HHHHHTT-EEEEEEE-GGG CS
  RsgA_GTPase  20 livvslkepelslnlldrfL..vlaeekgiepvivlnKiDl 58 
                  +iv+ +++p ++++ ++  L  + +  ++ +p i + K D 
   CCE31073.1 145 FIVLDVNKPLTDKRVIESELegFGIRINKQPPNITFKKKDK 185
                  66666666666666666655222334455556666666654 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.032
                  HHHHHHTT-EEEEEEE-GGG--HHHHH CS
  RsgA_GTPase  39 LvlaeekgiepvivlnKiDlleeeeel 65 
                  L +  ++ i++v +lnKiD ++ ee l
   CCE31073.1 233 LEAKSRAYIPVVYCLNKIDSISIEE-L 258
                  555566779999*********9988.3 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     5e-05      0.09      11     118 ..      74     174 ..      66     214 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5e-05
                 SSHHHHHHHHHTS--SS--TTT.S---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETT.B-SHHHHHHHHHH CS
        AIG1  11 nGkSaTgNsilgkkaFesklsa.qsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslg.rfteedekalktl 107
                 +GkS+    + g++    +++a +  t ++   + + +g  +++iD Pg+++  ++     ++++    ++++  h + +vl+++  +t  d+ +++  
  CCE31073.1  74 VGKSTLMSRLTGQHS---EAAAyEFTTLTSVPGQVVYNGAPLQIIDLPGIIEGAKDGRGRGRQVIA---VAKT-CHLIFIVLDVNkPLT--DKRVIESE 163
                 555555555555543...33330344455555666899****************999988888884...5555.9*********96677..99999988 PP

                 HHHHCGGGGGG CS
        AIG1 108 kelFGekilky 118
                  e FG +i k+
  CCE31073.1 164 LEGFGIRINKQ 174
                 88888888765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0011       2.1       3      26 ..      67      90 ..      65     110 .. 0.81
   2 ?    1.2   0.0      0.22     4e+02      62     119 ..     184     251 ..     155     252 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0011
                EEESSTTSSHHHHHHCHCT-CCC- CS
         Roc  3 vlvGdsgvGKtsllkrfvedkfse 26
                 ++G  +vGK++l++r++ ++ + 
  CCE31073.1 67 GFIGFPSVGKSTLMSRLTGQHSEA 90
                58999************9887654 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.22
                 EE-SGGCTTTT-HHHHCTSCEEEEEEE.........GHHHHCHHHHHHHHHHHCSS.S-EEEEEE-TT CS
         Roc  62 DtaGqerfrslhplylreaalailvyd.........srssenlkeWlkelkkvagk.spvilvgnkiD 119
                 D +G +  +++  +++ ++++  ++ +          r ++++++ ++ l+++++  +pv+ + nkiD
  CCE31073.1 184 DKGGLNISHTVPLSHIDNDEIKAVMSEykinsaditIRCDATVDDLIDVLEAKSRAyIPVVYCLNKID 251
                 55555555555555555555544443222322223244567788888888888765279999****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.72
# Mc/sec: 1530.24
//
Query:       CCE31074.1  [L=1520]
Description: related to nasopharyngeal carcinoma susceptibility protein LZ16 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-19   68.1   0.0      7e-12   45.8   0.1    2.9  3  Ank_2     Ankyrin repeats (3 copies)
    1.4e-13   51.1   0.0    9.7e-07   29.2   0.1    5.0  6  Ank_4     Ankyrin repeats (many copies)
      3e-11   42.5   1.2    0.00054   20.2   0.1    5.5  5  Ank_3     Ankyrin repeat
    6.2e-10   39.1   2.1    0.00029   21.1   0.2    4.0  4  Ank_5     Ankyrin repeats (many copies)
    6.6e-10   39.0   7.5    0.00016   22.0   0.2    5.2  6  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.18   6.6e+02      49      71 ..     361     383 ..     356     396 .. 0.70
   2 !   45.8   0.1     2e-15     7e-12       2      80 ..     370     459 ..     369     462 .. 0.83
   3 !   18.9   0.0   4.9e-07    0.0017       3      81 ..     560     650 ..     558     661 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.18
       Ank_2  49 adndgrtpLhyAarsghleivkl 71 
                 +d +g+t L  A+  g +e +k 
  CCE31074.1 361 LDAHGQTLLARACARGEYEGAKQ 383
                 67789999999998899998884 PP

  == domain 2  score: 45.8 bits;  conditional E-value: 2e-15
       Ank_2   2 hlAakngnlelvklLl..egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadin 80 
                   A+  g +e  k+ l     d+n  +  g+t+L++Aa+ng+++ivklL+++      +++d  tpL  A+ +ghl +v+lLl+ g+++ 
  CCE31074.1 370 ARACARGEYEGAKQRLreRPEDLNvaDyAGNTPLQIAAINGCEDIVKLLIDAgcnldcVNYDKDTPLLDAVDNGHLGVVNLLLNAGVNPR 459
                 56888777777777776666788875479*********************96767667779999*******************7787765 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 4.9e-07
       Ank_2   3 lAakngnlelvklLl...egadpnkngktaLhyAakngnleivklLleh.........ad...ndgrtpLhyAarsghleivklLl.ekgadinl 81 
                 +Aa  g+ e+v  +l   eg+d +      + +Aa++g+  +++lLl           ++   ++  tp+ +A+ + ++++v+lLl ++g+d+++
  CCE31074.1 560 QAAGRGDEETVARILqvkEGYD-D---PESMVAAARGGHDLVIQLLLGLgganadpgpVNslpSEFATPILAAIGQENIKVVELLLeQHGFDPTR 650
                 6777776765555544566655.4...67788888888855568888523334445554466443448888888888888888888444888876 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.88   3.1e+03      32      50 ..     362     380 ..     357     383 .. 0.80
   2 !   16.5   0.0   2.6e-06    0.0093       3      55 .]     367     419 ..     365     419 .. 0.85
   3 !   29.2   0.1   2.7e-10   9.7e-07       2      55 .]     400     452 ..     399     452 .. 0.97
   4 !   11.3   0.0   0.00011      0.39       3      42 ..     434     472 ..     433     474 .. 0.92
   5 ?   -1.4   0.0       1.1   3.9e+03       4      22 ..     557     575 ..     555     581 .. 0.86
   6 !   13.0   0.0   3.4e-05      0.12       7      55 .]     588     641 ..     584     641 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.88
       Ank_4  32 nrsGetalhiAakrgnvei 50 
                 ++ G+t+l +A+ rg +e 
  CCE31074.1 362 DAHGQTLLARACARGEYEG 380
                 55699*********97765 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.6e-06
       Ank_4   3 taLhyaaisgrlel.vrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L +a++ g +e   ++L e+  d+n   +  G+t+l+iAa +g  +i+klL+
  CCE31074.1 367 TLLARACARGEYEGaKQRLRERPEDLNVA-DYAGNTPLQIAAINGCEDIVKLLI 419
                 677788895555551569**9999****7.***********************8 PP

  == domain 3  score: 29.2 bits;  conditional E-value: 2.7e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+L  aai g++++v+lL++ g +++++ n + +t+l  A+ +g++ ++ lLl
  CCE31074.1 400 NTPLQIAAINGCEDIVKLLIDAGCNLDCV-NYDKDTPLLDAVDNGHLGVVNLLL 452
                 89***************************.********************9997 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00011
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiA 42 
                 t+L  a+  g+l +v lLl+ g+++ +  n +Ge +++++
  CCE31074.1 434 TPLLDAVDNGHLGVVNLLLNAGVNPRKA-NVNGEEPIDRV 472
                 89999*******************9997.*****999886 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.1
       Ank_4   4 aLhyaaisgrlelvrlLle 22 
                 +L +aa  g++e+v+++l+
  CCE31074.1 557 TLRQAAGRGDEETVARILQ 575
                 6889999*******99985 PP

  == domain 6  score: 13.0 bits;  conditional E-value: 3.4e-05
       Ank_4   7 yaaisgrlelvrlLlek.gad.....inaqdnrsGetalhiAakrgnveilklLl 55 
                 +aa  g+  +++lLl   ga+     +n   +++  t++  A+  +n+++++lLl
  CCE31074.1 588 AAARGGHDLVIQLLLGLgGANadpgpVNSL-PSEFATPILAAIGQENIKVVELLL 641
                 5677899999*****98667777**9***9.***********************8 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.045   1.6e+02       1      30 [.     364     393 ..     364     394 .. 0.77
   2 !   20.2   0.1   1.5e-07   0.00054       2      30 ..     399     426 ..     398     427 .. 0.94
   3 ?    4.0   0.0     0.029   1.1e+02       3      30 ..     433     459 ..     431     460 .. 0.89
   4 ?    0.5   0.0      0.39   1.4e+03       8      28 ..     587     608 ..     586     610 .. 0.63
   5 !    7.4   0.0    0.0022       7.8       4      29 ..     623     648 ..     621     649 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.045
       Ank_3   1 nGetpLhlAarsgnle.ivkfLlenkgadvn 30 
                 +G+t+L +A+  g +e   + L e +  d+n
  CCE31074.1 364 HGQTLLARACARGEYEgAKQRLRE-RPEDLN 393
                 79***********99855555555.777766 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.5e-07
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+tpL +Aa +g+ +ivk+L++  g++++
  CCE31074.1 399 GNTPLQIAAINGCEDIVKLLID-AGCNLD 426
                 9*********************.899987 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.029
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                  tpL  A+ +g+l +v +Ll+  g++++
  CCE31074.1 433 DTPLLDAVDNGHLGVVNLLLN-AGVNPR 459
                 589999***************.899986 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.39
       Ank_3   8 lAarsgnle.ivkfLlenkgad 28 
                 +Aa  g ++ ++++Ll   ga+
  CCE31074.1 587 VAAARGGHDlVIQLLLGLGGAN 608
                 5666666664888888865655 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.0022
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 tp+  A+ + n+++v++Lle++g d+
  CCE31074.1 623 TPILAAIGQENIKVVELLLEQHGFDP 648
                 99999******************997 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0     7e-05      0.25      13      56 .]     362     406 ..     360     406 .. 0.95
   2 !   21.1   0.2   8.1e-08   0.00029       3      45 ..     386     428 ..     385     429 .. 0.89
   3 !   19.0   0.9   3.5e-07    0.0013       1      52 [.     418     468 ..     418     472 .. 0.89
   4 ?    2.4   0.0     0.058   2.1e+02      16      56 .]     621     661 ..     607     661 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7e-05
       Ank_5  13 dgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56 
                 d +g+t L  A+ +g  + ++  l +r++dln+ d  G+t+l++A
  CCE31074.1 362 DAHGQTLLARACARGEYEGAKQRLrERPEDLNVADYAGNTPLQIA 406
                 66899***************************************9 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 8.1e-08
       Ank_5   3 ehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnlt 45 
                 +++p+d+n  d  gntpL +Aa +g+ d+v+lL++ g++l++ 
  CCE31074.1 386 RERPEDLNVADYAGNTPLQIAAINGCEDIVKLLIDAGCNLDCV 428
                 4569******************************888888765 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 3.5e-07
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                 L+++g + d+ ++d++  tpL  A+ +g++ vv+lLl+ g++++  + +G+ +
  CCE31074.1 418 LIDAGcNLDCVNYDKD--TPLLDAVDNGHLGVVNLLLNAGVNPRKANVNGEEP 468
                 89***9**********..*******************9999988777776655 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.058
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                   tp+  A+ + +  vv+lLl+ +    ++ + G+t +++A
  CCE31074.1 621 FATPILAAIGQENIKVVELLLEQHGFDPTRRFKGETYYEIA 661
                 4588888999999********55555566777788888887 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.1   7.6e+03       5      11 ..     312     320 ..     312     331 .. 0.73
   2 ?   -3.5   0.0         5   1.8e+04       1      13 [.     364     376 ..     364     382 .. 0.80
   3 !   22.0   0.2   4.5e-08   0.00016       2      31 ..     399     429 ..     398     430 .. 0.91
   4 !    7.5   0.1    0.0017       5.9       2      27 ..     432     458 ..     431     464 .. 0.81
   5 !    6.5   0.0    0.0033        12       9      26 ..     589     608 ..     586     616 .. 0.72
   6 ?    3.0   0.0     0.045   1.6e+02       7      28 ..     626     649 ..     622     651 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.1
                 HHHHHH..H CS
         Ank   5 PLHlAa..t 11 
                 PLH A+  t
  CCE31074.1 312 PLHSASyqT 320
                 9***98541 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5
                 TSBBHHHHHHHHT CS
         Ank   1 dGnTPLHlAatng 13 
                 +G T L +A+ +g
  CCE31074.1 364 HGQTLLARACARG 376
                 699***9999544 PP

  == domain 3  score: 22.0 bits;  conditional E-value: 4.5e-08
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 GnTPL +Aa ng ++i+klL+  G+nl+ ++
  CCE31074.1 399 GNTPLQIAAINGCEDIVKLLIdAGCNLDCVN 429
                 9********9999********66****9876 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0017
                 SBBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnl 27 
                  +TPL  A+ ng++ ++ lLL  G n+
  CCE31074.1 432 KDTPLLDAVDNGHLGVVNLLLnAGVNP 458
                 58*******999999******668665 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.0033
                 HHHHTTHHHHHHHH..TTTS CS
         Ank   9 AatngkkriiklLL..hGAn 26 
                 Aa++g+  +i+lLL   GAn
  CCE31074.1 589 AARGGHDLVIQLLLglGGAN 608
                 5699*********9633565 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.045
                 HHHH...HHTTHHHHHHHH..TTTSTT CS
         Ank   7 HlAa...tngkkriiklLL..hGAnln 28 
                   A+   +++   +++lLL  hG +++
  CCE31074.1 626 LAAIgqeNIK---VVELLLeqHGFDPT 649
                 5555655666...*******8898876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2903  (0.161916); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                       404  (0.0225333); expected 17.9 (0.001)
Passed Fwd filter:                       102  (0.00568911); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 2.89u 0.40s 00:00:03.29 Elapsed: 00:00:00.70
# Mc/sec: 6593.49
//
Query:       CCE31075.1  [L=255]
Description: uncharacterized protein CPUR_04926 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-05   22.7   0.0    0.00056   20.1   0.0    2.2  1  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.1e-08   0.00056       2     196 .]      25     237 ..      24     237 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.1e-08
  2OG-FeII_Oxy_2   2 lllipnflsaeeaaellrell.eegp.frqptilggkrvsvqqt...ll..gplgwatdgpgyrysekesvdakplspfpeallrlverlvkaag 89 
                     +++ipnf+s ee + +l++++ +  p + q  +++ +++++  +   ll  +   w +d+   r  +      +  +p+p+   ++  ++v+   
      CCE31075.1  25 AYYIPNFISSEEEQLILDKIAaAPKPrWKQLSHRRLQTWPSDLVqdrLLdaPLPAWLEDPVVSRLLSL---PTAANTPTPSSASDA--AIVSSHI 114
                     69******************954444488889999999877543111333244456666655555533...223333444433332..2333223 PP

  2OG-FeII_Oxy_2  90 ...pegwspnaalvnfYrdgariglHqDkeesaleapivSlSLGasatfrfgkesree.....eiiailLesGdllvmggesrkay.Hgvprikk 175
                         +  +pn++l+n Y+ g       D   +   +++ ++SLG+s  + +   +++      +  +il e+ +ll+ +    + y Hg++ i++
      CCE31075.1 115 fsrSPHQRPNHVLINEYPRG-------DGAAY--WPVVCTVSLGSSLCLNLHRSKEDGaldavPAWRILQEPRSLLITTDTLYTDYlHGIADIEE 200
                     5567889************9.......66656..89************9995543333588889999999*******99999999********** PP

  2OG-FeII_Oxy_2 176 d.............tapele.......leelrtrRinlTfR 196
                     d                           ++ r+ R +lT+R
      CCE31075.1 201 DvnlsagsianwslL----RdahlfadGCNSRETRTSLTYR 237
                     977766666555551....055556688999********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1883.73
//
Query:       CCE31076.1  [L=323]
Description: related to DFG10 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-11   44.3   1.3    1.7e-11   44.3   1.3    1.6  2  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase


Domain annotation for each model (and alignments):
>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.36   6.5e+03      42      54 ..      98     110 ..      81     135 .. 0.51
   2 !   44.3   1.3   9.5e-16   1.7e-11      35     150 .]     206     323 .]     169     323 .] 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.36
  Steroid_dh  42 lllgivlfvlgml 54 
                 +++g+ +f    +
  CCE31076.1  98 VSTGLSVFWAWQY 110
                 2333333333333 PP

  == domain 2  score: 44.3 bits;  conditional E-value: 9.5e-16
  Steroid_dh  35 dylkkdrlllgivlfvlgmliniksdiiLrelrkegetkykiprgglFelvsapnyfgEilewigyalvtkslaalaFal.......ftvlnltvraaa 126
                  +l+++r+   +++f+ + l + ++++ L +l+     ky +p  g+F+++++p+y+ E++ ++  ++++   ++  F+         +v+nl+  aa 
  CCE31076.1 206 AVLWTTRVPWTLAVFLAAWLKQNECHRYLASLK-----KYTLPDEGVFKYIVCPHYTCECIIYLAISVMAA-PPGSFFNTsilcglvLVVVNLGATAAG 298
                 3444558888999*****************665.....79***************************9998.7888888666777778999******** PP

  Steroid_dh 127 hhkwykkkf.ekYpksRkiliPfvf 150
                 + +wy  kf  +   ++  +iP +f
  CCE31076.1 299 TKQWYAGKFgADKVADKSRMIPGIF 323
                 *********8788888889999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2364.75
//
Query:       CCE31077.1  [L=15]
Description: uncharacterized protein CPUR_04928 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (15 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        43  (0.00239835); expected 358.6 (0.02)
Passed bias filter:                       37  (0.0020637); expected 358.6 (0.02)
Passed Vit filter:                         0  (0); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 117.94
//
Query:       CCE31078.1  [L=1142]
Description: related to beta-1,3 exoglucanase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-57  190.8  68.0    6.1e-19   68.0  11.1    7.9  8  WSC             WSC domain


Domain annotation for each model (and alignments):
>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3  10.6   2.3e-22   4.2e-18       1      82 []      38     117 ..      38     117 .. 0.96
   2 !   50.1  11.7   1.3e-17   2.3e-13       2      82 .]     143     224 ..     142     224 .. 0.91
   3 ?   -3.5   1.3      0.68   1.2e+04      34      34 ..     325     325 ..     290     375 .. 0.60
   4 !   68.0  11.1   3.4e-23   6.1e-19       1      82 []     390     469 ..     390     469 .. 0.97
   5 !   53.2  10.6   1.5e-18   2.6e-14       2      82 .]     495     576 ..     494     576 .. 0.92
   6 ?   -8.9   8.9         1   1.8e+04      38      75 ..     832     865 ..     811     872 .. 0.62
   7 ?    2.0   1.0     0.014   2.4e+02      27      63 ..     978    1016 ..     954    1020 .. 0.76
   8 ?   -0.9   0.2      0.11   1.9e+03      31      48 ..    1077    1094 ..    1070    1130 .. 0.71

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 2.3e-22
         WSC   1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82 
                 y GC++++   ++l++ ss +  +mt+ekC+a Ck +g++yagle+++ CyCg++++ a+ ++  s+C+ +CsGd++q CGg
  CCE31078.1  38 YSGCFQEGRGGNALIFRSSLDAGNMTVEKCTAECKGNGFRYAGLEYYGVCYCGTTIDGAQIDE--SKCSLPCSGDNTQKCGG 117
                 89*******************************************************987777..45**************8 PP

  == domain 2  score: 50.1 bits;  conditional E-value: 1.3e-17
         WSC   2 lGCytdssesrrllgps.sasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82 
                 lGCytd+s++ r l+          tp++C a+C++kg++yag+e+g+eCyCg +l++ ++k + s+Cn+ C   s + CGg
  CCE31078.1 143 LGCYTDNSNKGRCLDYPvDLGGIVCTPKSCLAACRKKGFPYAGIEYGTECYCGVNLASDSTKVDISQCNSYCLDGSVTNCGG 224
                 7******666666655538888999************************************************99999***8 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.68
         WSC  34 C 34 
                  
  CCE31078.1 325 T 325
                 1 PP

  == domain 4  score: 68.0 bits;  conditional E-value: 3.4e-23
         WSC   1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82 
                 y GC++d+++ ++l++ ss +  +mt+ekC+a Ck +gy+yagle+++ CyCg++++  +  +  s+C+ +CsGd++q CGg
  CCE31078.1 390 YSGCFQDGKSGNALIFRSSLDAGNMTVEKCTAECKGNGYRYAGLEYYGVCYCGTTIDGFQLAD--SKCSLPCSGDKTQKCGG 469
                 89********************************************************99888..45**************8 PP

  == domain 5  score: 53.2 bits;  conditional E-value: 1.5e-18
         WSC   2 lGCytds.sesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82 
                 lGCytd  s+ r+l  p        tp++C a+Ck+k+++yag+e+gseCyCg +l++ ++k + s+Cn+ C   s++ CGg
  CCE31078.1 495 LGCYTDDsSKGRALNYPMDLGGIVCTPKSCLAACKKKNFPYAGIEYGSECYCGVNLASDSAKVDISQCNSDCLDGSNTKCGG 576
                 7****9956666666777999999*************************************************99999***8 PP

  == domain 6  score: -8.9 bits;  conditional E-value: 1
         WSC  38 gykyagledgseCyCgnslpaaavkassssCnasCsGd 75 
                  ++yag   + eC+  ++  +  +     +C+++C+G 
  CCE31078.1 832 CFRYAGWPGSLECFKFKQWCQYLNY----HCESECPGH 865
                 4667777777677655555554333....399999886 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.014
         WSC   27 pekCaafCkakgykyagledgseCyC...gnslpaaavka 63  
                  p+ C+++Ck ++y  +  ++++ C     gn++++ ++++
  CCE31078.1  978 PNVCVSACK-EQYDACLATYSRGCQTvgsGNNYNKRSEDS 1016
                  678*****9.668888888888998743455555555554 PP

  == domain 8  score: -0.9 bits;  conditional E-value: 0.11
         WSC   31 aafCkakgykyagledgs 48  
                  +++C+ +gy +ag+  g+
  CCE31078.1 1077 SQTCAVAGYGFAGTWLGT 1094
                  678999999999886554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1480  (0.0825478); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.27u 0.35s 00:00:01.62 Elapsed: 00:00:00.53
# Mc/sec: 6434.59
//
Query:       CCE31079.1  [L=1103]
Description: related to translation initiation factor eIF-3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-07   30.0   0.0    5.7e-07   30.0   0.0    3.2  3  PCI       PCI domain


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.14   2.5e+03      34      76 ..     216     258 ..     202     269 .. 0.63
   2 !   30.0   0.0   3.2e-11   5.7e-07      10     104 ..     438     559 ..     429     560 .. 0.89
   3 ?   -0.5   0.2     0.096   1.7e+03      38      68 ..     765     806 ..     737     834 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.14
                 THHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHH CS
         PCI  34 glaqllesLekkvrerllrqvskiyssislerlaklldlsvde 76 
                  ++  le L++ + ++++  + k+ ++ ++ rl +ll   v+ 
  CCE31079.1 216 RNNARLEILYQSTALQAFDFCLKYTRKTEFRRLCELLRNHVQT 258
                 4445566666666666666666677788888888887665555 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 3.2e-11
                 HHHTS.HHHHHHHHHHH....................HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSH......HHHHHHH CS
         PCI  10 lrsgn.lsgfseelkdl....................eeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsv......devEkil 81 
                   s++ l++++ e +dl                      ++ +d +++ ++  L++++ +rl++q+s+ y++++++ +++l  +++        +Ek++
  CCE31079.1 438 ALSKSlLQRARPEIRDLynilevdfhplsicqkispiLTKIGEDAEMERYIMPLQQVILTRLFQQLSQVYETVDVAFVESLALFPEpyqvsrATIEKFI 536
                 4445558888888888888888888888888888888888999999999************************************************** PP

                 HHHHHTTSSSEEEETTTTEEEEC CS
         PCI  82 vklIrdgeirakidqesgivvfk 104
                 ++  ++g ++ ++d+ +g+++f 
  CCE31079.1 537 MNGNKKGDLAIRLDHATGVLSFD 559
                 ********************996 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.096
                 HHHHHHHHHHHHHHHHHHH...........CESEEEHHHHHH CS
         PCI  38 llesLekkvrerllrqvsk...........iyssislerlak 68 
                   + Le+  r++ ++++s+           iy+++++++l +
  CCE31079.1 765 RFDHLERAFRKEEVKKLSEdyakqteqdraIYEKLRVKTLKE 806
                 555666666666666666655555555555666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2458  (0.137096); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                       169  (0.00942607); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.58u 0.36s 00:00:01.94 Elapsed: 00:00:00.55
# Mc/sec: 6037.94
//
Query:       CCE31080.1  [L=262]
Description: uncharacterized protein CPUR_04931 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   24.2   0.0      3e-05   23.7   0.0    1.2  1  ubiquitin  Ubiquitin family
     0.0041   17.8   0.0     0.0072   17.0   0.0    1.4  1  YukD       WXG100 protein secretion system (Wss), protein Yuk


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   3.3e-09     3e-05      10      69 ..     198     258 ..     189     261 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.3e-09
                 EEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE.-TTSBHGGHTTSTTEEEEEEE CS
   ubiquitin  10 kitleveesdtveelKekiaekegipaeqqrLiysGkvL.edertleeygiqdgstlhlvl 69 
                 k  +   +sdtv ++K  +a++ g +++q+ L  +G++  +d+ tle+ygi +g +l l +
  CCE31080.1 198 KSAVPCLPSDTVGQFKIMVAARIGREPNQIMLKRQGERPfKDHITLEDYGISNGVQLDLEI 258
                 55666779****************************7655**************9998865 PP

>> YukD  WXG100 protein secretion system (Wss), protein YukD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     8e-07    0.0072      41      74 ..     221     254 ..     207     256 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8e-07
                 S---TT-EEEEGGGEEEETTSBCGGGT--TT-EE CS
        YukD  41 agrpggwsLarvggapLsgdrtLaeagVrDGdlL 74 
                 + +p++  L+r g++p++++ tL+++g+ +G  L
  CCE31080.1 221 GREPNQIMLKRQGERPFKDHITLEDYGISNGVQL 254
                 567999*************************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1894.04
//
Query:       CCE31081.1  [L=93]
Description: probable G protein gamma subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-24   85.6   0.0    2.2e-24   85.2   0.0    1.1  1  G-gamma   GGL domain


Domain annotation for each model (and alignments):
>> G-gamma  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   1.2e-28   2.2e-24       2      68 .]      24      93 .]      23      93 .] 0.96

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 1.2e-28
     G-gamma  2 qlklklkrei.eqLkkeLkrerikvSkAceelidYvestkDpllpevwgppsageNpwiek..sgcCwil 68
                 lkl++++e+ ++L+++L+reri+vS A++++i+Y++ t+D+++p+vwg +++ge+p++++  +gcC i+
  CCE31081.1 24 DLKLRRLTELnNRLREDLERERIPVSTAAKSIIAYCNGTRDYMVPSVWGSVPKGEDPYAPQqsGGCCNIM 93
                689**********************************************************988999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 771.14
//
Query:       CCE31082.1  [L=159]
Description: uncharacterized protein CPUR_04933 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-33  114.7   0.0      2e-33  114.4   0.0    1.1  1  Rdx       Rdx family
      0.002   18.4   0.9     0.0028   17.9   0.9    1.2  1  DUF3446   Early growth response N-terminal domain


Domain annotation for each model (and alignments):
>> Rdx  Rdx family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   2.3e-37     2e-33       1      74 []       9     106 ..       9     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 2.3e-37
                 EEEEEEETTTTTHHHHHHHHHHHHHHCCCCSSEEEEEEESTT-EEEEETTE........................EEEEHHHHTSS--HHHHHHHHHH CS
         Rdx   1 rvtIeYCtqCkwmlraaelaqellstfpeslgevalqpstgGaFeVtldge........................lvwsrkeeggfpetkelkqrvrd 74 
                 rvtI++CtqC+wmlraa++aqellstf++slg+v+lqpstgG+F++t++++                        ++w+rk++ggfpe+k+lk+rvrd
  CCE31082.1   9 RVTIRFCTQCRWMLRAAYYAQELLSTFSTSLGQVSLQPSTGGIFTITIQTSsssssssspdlpgtdtgtgtgdiqVLWDRKRDGGFPEVKDLKRRVRD 106
                 7************************************************7777888999999999*******************************97 PP

>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.9   3.1e-07    0.0028      13      58 ..      24      72 ..      12      87 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.1e-07
     DUF3446 13 nslwaeellslvsglv.gvanppsspss..sssssssssssssspslsc 58
                 + +a+ells +s  +  v+ +ps+      + ++sssssssssp l  
  CCE31082.1 24 AAYYAQELLSTFSTSLgQVSLQPSTGGIftITIQTSSSSSSSSSPDLPG 72
                5778999******666256558877554547788888888888988744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1281.21
//
Query:       CCE31083.1  [L=324]
Description: probable serine/threonine protein phosphatase PP1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-40  138.5   0.1    5.2e-40  138.1   0.1    1.2  1  Metallophos  Calcineurin-like phosphoesterase
    5.9e-23   81.1   1.8    8.5e-23   80.5   1.1    1.7  2  STPPase_N    Serine-threonine protein phosphatase N-terminal 


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.1   5.8e-44   5.2e-40       2     201 ..      58     249 ..      57     252 .. 0.94

  Alignments for each domain:
  == domain 1  score: 138.1 bits;  conditional E-value: 5.8e-44
                  EEEEEESBTBTTCCTHHHHHHHHHHHH..HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl..lreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygyl 88 
                  +i ++gD+H     gq++dll+l++    ++e  ++l+l  GD+vdrg  + e++ l la+++kyp ++++l+GNHe        gf++e++++y   
   CCE31083.1  58 PIKICGDIH-----GQYYDLLRLFEYGgfPPE-ANYLFL--GDYVDRGKQSLETICLlLAYKIKYPENFFILRGNHEcasinriyGFYDECKRRYN-- 145
                  6889*****.....**********77753555.99****..*******77777777779***********************************99.. PP

                  HHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHH CS
  Metallophos  89 gifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgde 182
                      ++w++++++fn+lp+a++++   k++++hGg sp+l +s ++++++ +++++p+ g   d++++d       + + + g+s + rg + +fg++
   CCE31083.1 146 ---IKLWKTFTDCFNCLPIAAIIDE--KIFTMHGGlSPDL-NSMEQIRRVMRPTDIPDCGllcDLLWSD-------PDKDITGWSENDRGVSFTFGPD 230
                  ...99********************..********77777.****************************.......********************** PP

                  HHHHHHHHTTESEEEEESS CS
  Metallophos 183 aledllkkygvdlvisGHt 201
                  ++ ++l+k++ dl++++H+
   CCE31083.1 231 VVSRFLQKHDMDLICRAHQ 249
                  ******************8 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   1.1   9.5e-27   8.5e-23       1      48 []       9      56 ..       9      56 .. 0.97
   2 ?   -3.5   0.0       1.7   1.6e+04      22      32 ..     236     246 ..     235     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 9.5e-27
   STPPase_N  1 vDdiIerLlevrgkpggkkvqLseaEIrqlCakareiFLsQPtLLeLe 48
                +D+iI+rLlevrg+++gk+vqL e EIr+lC+kareiF+sQP+LLeLe
  CCE31083.1  9 LDSIIDRLLEVRGSRPGKQVQLLETEIRYLCTKAREIFISQPILLELE 56
                7************8888******************************7 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.7
   STPPase_N  22 LseaEIrqlCa 32 
                 L+ +++ ++C+
  CCE31083.1 236 LQKHDMDLICR 246
                 77899999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2559.25
//
Query:       CCE31084.1  [L=118]
Description: uncharacterized protein CPUR_04935 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.022   13.3   0.0      0.028   13.0   0.0    1.0  1  Pectate_lyase_2  Periplasmic pectate lyase
       0.06   12.9   0.0      0.085   12.4   0.0    1.2  1  NCKAP5           Nck-associated protein 5, Peripheral clock p


Domain annotation for each model (and alignments):
>> Pectate_lyase_2  Periplasmic pectate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.2e-06     0.028     392     455 ..      45     108 ..      38     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-06
  Pectate_lyase_2 392 yaraytvspdaelwrvargiagaqglgelgsapgkdv..kvdlatknndpyalfalldlyqaskvk 455
                       ar   +s d el r+ r +ag+ gl +      k v  k d+++k     ++fall  yq s+v 
       CCE31084.1  45 NARQVIMSGDDELQRLLRAVAGCCGLLKRMLKLLKRVslKSDICAK--PLKSVFALLKSYQNSHVT 108
                      689999*******************988766666666115566555..56789**********985 PP

>> NCKAP5  Nck-associated protein 5, Peripheral clock protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.5e-06     0.085      35      53 ..      22      40 ..      14      47 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.5e-06
      NCKAP5 35 tgpsiasWFGlrkSkLPAL 53
                +gp+ia+W G r+Sk P L
  CCE31084.1 22 NGPTIANWRGRRRSKRPQL 40
                79*************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 980.33
//
Query:       CCE31085.1  [L=1253]
Description: related to bromodomain and PHD finger-containing protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-34  116.8   8.4    4.9e-34  116.8   8.4    2.4  2  zf-HC5HC2H_2  PHD-zinc-finger like domain
    3.5e-32  112.0   1.2    3.5e-32  112.0   1.2    3.2  3  EPL1          Enhancer of polycomb-like
    1.8e-26   92.2   8.2    1.8e-26   92.2   8.2    3.3  3  zf-HC5HC2H    PHD-like zinc-binding domain
    1.2e-14   53.5   2.2    1.2e-14   53.5   2.2    2.4  2  PHD_2         PHD-finger
    6.6e-09   35.5  26.1    7.4e-08   32.2  12.6    2.7  2  PHD           PHD-finger


Domain annotation for each model (and alignments):
>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   1.9     0.076   2.7e+02      47      84 ..     424     463 ..     408     466 .. 0.75
   2 !  116.8   8.4   1.4e-37   4.9e-34       2     110 .]     488     604 ..     487     604 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.076
  zf-HC5HC2H_2  47 ekikkerlkekCllCkkr....kGaciqCskkeCktafHvtC 84 
                   e+   e+  +kC++C++     + a + C    C+ a H  C
    CCE31085.1 424 ETQSGEEPDSKCAICDDGdcenTNAIVFCDG--CNLAVHQEC 463
                   5555566789*****9987766777777877..******999 PP

  == domain 2  score: 116.8 bits;  conditional E-value: 1.4e-37
  zf-HC5HC2H_2   2 eCvlCkkkgGalkktsderwvHvlCallvpevsfsnvaerepvd.vekikkerlkekCllCkkrkGaciqCskkeCktafHvtCalaaglvmeledl 97 
                   +C++C++++Ga+k+t+ ++w+H+lCa+++pevs+ n++ +epv  vek++k+r+k++C++C++++GaciqCs+k+C++afHvtCa++a+l++++++ 
    CCE31085.1 488 TCIFCPNTDGAFKQTNSSKWAHLLCAMWIPEVSLGNHTFMEPVMdVEKVPKTRWKLSCYICRQKMGACIQCSNKNCYQAFHVTCARRAKLYLKMKTS 584
                   7*****************************************999**************************************************98 PP

  zf-HC5HC2H_2  98 ek.......klkvialckkh 110
                   +        ++  +a+c kh
    CCE31085.1 585 HGalavldgNMILKAFCDKH 604
                   87788887777777788777 PP

>> EPL1  Enhancer of polycomb-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   1.2   9.7e-36   3.5e-32       1     157 []     143     392 ..     143     392 .. 0.84
   2 ?    1.0   0.3      0.14     5e+02      55      96 ..     670     722 ..     610     747 .. 0.59
   3 ?   -1.0   0.6      0.56     2e+03      48      72 ..    1208    1231 ..    1175    1250 .. 0.41

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 9.7e-36
        EPL1   1 rqprldikkkLkviseeevdgldeseseeeiseknsnkens.........qqavetgvdkkeenekhq.viaaakkkesssasske............. 76 
                 ++p+ldi+k++ ++s+e+vdg++  + ++  s++++++++          +    t  +++++ +  +  ia++k++ +   ++ +             
  CCE31085.1 143 FHPNLDIEKTFIIFSAEDVDGISIGPANTASSQQKQQQQSGtplllangsM----TPSRQTNSASTGTePIAEEKTETN-PGDT-Qpitpsrrsrrpir 235
                 79*********************8887766665555555447888754331....222233333222212222222222.2222.14678888999*** PP

        EPL1  77 ...........................slkkeelkLpkPsfre................................ferppssyirfseks.eeeldd.. 113
                                            +++ke+l+L+ Ps+r+                                f+rp++++i++++++ e++ d   
  CCE31085.1 236 dvvsfctprpsdlgttprtpkilpisnQTPKERLDLKLPSYRKtnriqlfesktfgqaryvdksmsnvgyqesdeFIRPDTTLIKAIDTNaEDDFDFsh 334
                 ***************************9**************************************************************9999988** PP

        EPL1 114 ..............eveYdMDEeDekWLeelnekrkkegvekisediFEivmdrlEke 157
                               +veYdMDE+D++WLe ln++rk+ gve+i++++FEi+++++Eke
  CCE31085.1 335 msskddhsyhsklgRVEYDMDEQDDMWLEHLNAQRKQIGVEAITREVFEITITKIEKE 392
                 *********************************************************8 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.14
        EPL1  55 n........ekh.q..viaaakkkesssasske......slkkeelkLpkPsfreferp 96 
                 +        ++  q   ++++kkk++      +      +l++   ++p+++f++++ +
  CCE31085.1 670 SasgsgsgsSAVpQadSTSTSKKKSD------QppknmwKLPSGAPIIPQVVFDTVDAS 722
                 02222222211111111222222222......134445688999999999999985444 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.56
        EPL1   48 gvdkkeenekh.qviaaakkkesssa 72  
                  g+ k e+ ek  +v ++a+k+e+ ++
  CCE31085.1 1208 GE-KREKAEKGeKV-EKAEKAEKGEK 1231
                  11.11111211111.12222222222 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   2.3     0.013        46      31      65 ..     427     463 ..     409     466 .. 0.81
   2 ?   -1.0   1.3      0.59   2.1e+03      37      54 ..     477     494 ..     469     500 .. 0.83
   3 !   92.2   8.2   4.9e-30   1.8e-26       1      89 [.     509     604 ..     509     605 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.013
  zf-HC5HC2H  31 kkerkklkCylCk....kkvGaciqCskkkCkkafHvtC 65 
                 + e+ + kC +C+    +++ a++ C+   C+ a H  C
  CCE31085.1 427 SGEEPDSKCAICDdgdcENTNAIVFCDG--CNLAVHQEC 463
                 55666789*****77776689*****98..********9 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.59
  zf-HC5HC2H  37 lkCylCkkkvGaciqCsk 54 
                  kC lC + +  ci C +
  CCE31085.1 477 RKCQLCGRGIPTCIFCPN 494
                 689999999999999976 PP

  == domain 3  score: 92.2 bits;  conditional E-value: 4.9e-30
  zf-HC5HC2H   1 HvvCalwipevvfeeekeiemeeiedvekikkerkklkCylCkkkvGaciqCskkkCkkafHvtCakeagllleeeeeke.........klksyCkkH 89 
                 H++Ca+wipev   + ++  me+++dvek++k+r+kl+Cy+C++k+GaciqCs+k+C +afHvtCa++a+l+l+++++++          lk++C+kH
  CCE31085.1 509 HLLCAMWIPEVSLGN-HT-FMEPVMDVEKVPKTRWKLSCYICRQKMGACIQCSNKNCYQAFHVTCARRAKLYLKMKTSHGalavldgnmILKAFCDKH 604
                 99********98865.55.6*******************************************************9666567777777799******* PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   2.2   3.4e-18   1.2e-14       1      35 [.     446     479 ..     446     480 .. 0.97
   2 ?   -1.5   1.6      0.53   1.9e+03       5      19 ..     556     572 ..     552     577 .. 0.83

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 3.4e-18
       PHD_2   1 tnpllsCdkCsvaVHasCYGvskesdgeeWlCrrC 35 
                 tn +++Cd+C++aVH++CYGv+ +++g +WlCr+C
  CCE31085.1 446 TNAIVFCDGCNLAVHQECYGVPFIPEG-QWLCRKC 479
                 799************************.******* PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.53
       PHD_2   5 lsCd..kCsvaVHasCY 19 
                 ++C+  +C  a+H  C 
  CCE31085.1 556 IQCSnkNCYQAFHVTCA 572
                 8898889999***9997 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2  12.6   2.1e-11   7.4e-08       2      51 ..     435     481 ..     434     482 .. 0.93
   2 !    8.4   5.6   0.00053       1.9       2      31 ..     545     573 ..     544     583 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.1e-11
                 BTTTTS.TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkk.ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 Ca+C++ + ++ + +v+CdgC+ ++Hq+C+++p      peg+wlC+kC+ 
  CCE31085.1 435 CAICDDgDCENTNAIVFCDGCNLAVHQECYGVPFI----PEGQWLCRKCQL 481
                 ******99999**********************66....8899******85 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00053
                 BTTTTSTTSTTSCEEEET..TTSCEEETTTSS CS
         PHD   2 CavCkkksdeeeelvqCd..gCkrwfHqkClk 31 
                 C +C++   + +  +qC   +C ++fH++C +
  CCE31085.1 545 CYICRQ---KMGACIQCSnkNCYQAFHVTCAR 573
                 9*****...79******6337*********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1056  (0.058899); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.42
# Mc/sec: 8996.41
//
Query:       CCE31086.1  [L=839]
Description: uncharacterized protein CPUR_04937 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-13   51.0   5.1     0.0012   19.2   0.1    4.1  4  LRR_4     Leucine Rich repeats (2 copies)
    8.6e-11   41.4   7.7    1.2e-06   28.2   2.0    3.3  3  LRR_8     Leucine rich repeat
    0.00095   19.4   9.7         29    5.7   0.2    6.4  5  LRR_1     Leucine Rich Repeat
     0.0057   16.2   0.1      0.012   15.1   0.1    1.6  1  LRR_9     Leucine-rich repeat
  ------ inclusion threshold ------
      0.033   14.2   6.2         20    5.5   0.0    5.2  5  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.5   9.1e+03      22      33 ..     232     241 ..     225     245 .. 0.69
   2 !   17.9   1.2   8.3e-07     0.003       3      40 ..     448     487 ..     448     492 .. 0.86
   3 !   19.2   0.1   3.3e-07    0.0012       3      43 ..     496     537 ..     494     538 .. 0.88
   4 !   12.2   0.0   5.2e-05      0.19       3      34 ..     542     576 ..     542     582 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.5
                 -TT--EEE-.-S CS
       LRR_4  22 lpnLkeLdLsgN 33 
                 ++nL+ L +  N
  CCE31086.1 232 FKNLQALEI--N 241
                 899999888..3 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 8.3e-07
                 --EEE--SS---E-S-..HHH-TT.--EEE-.-S-----GG CS
       LRR_4   3 LevLdLsnNqltdipl..leklpn.LkeLdLsgNnlitdld 40 
                 L++L+Ls N +t++p+  l+ l n L +LdLs+N l ++++
  CCE31086.1 448 LRHLCLSENAITSFPSssLAPLSNtLYSLDLSSN-LFSQIP 487
                 9***************76667**********998.878874 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 3.3e-07
                 --EEE--SS---E-S-HH.H.-TT--EEE-.-S-----GGGGX CS
       LRR_4   3 LevLdLsnNqltdiplle.k.lpnLkeLdLsgNnlitdldeLk 43 
                 L+ L+Ls +++ ++++l+ + lp  + L+L + n++++l +++
  CCE31086.1 496 LRALNLSYCMIDSLQSLArNpLPAITALNL-RSNRLQSLAGIE 537
                 999*************77788*********.666999998775 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 5.2e-05
                 --EEE--SS---E-S-HH.....H-TT--EEE-.-S- CS
       LRR_4   3 LevLdLsnNqltdiplle.....klpnLkeLdLsgNn 34 
                 Le LdL++N+l d  +le     ++p+ +e++L gN+
  CCE31086.1 542 LERLDLRDNHLAD--PLEvarltGIPDIREVWLEGNP 576
                 89**********9..866666769*********9993 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   2.0   3.2e-10   1.2e-06       3      60 ..     448     505 ..     446     506 .. 0.93
   2 !   13.8   0.8     1e-05     0.036      24      61 .]     517     552 ..     506     552 .. 0.87
   3 !   14.1   0.2   8.4e-06      0.03       3      60 ..     520     576 ..     518     577 .. 0.73

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 3.2e-10
                 -SEEE-TTS--SEE-TTSSTT-TT.--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkglsn.LkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60 
                 L+ L Ls N +ts + ++   lsn L +LdLs+Nl + + p++++ L++Lr L+Ls++ 
  CCE31086.1 448 LRHLCLSENAITSFPSSSLAPLSNtLYSLDLSSNLFSQI-PDSLATLAALRALNLSYCM 505
                 8999*****************8874778***********.9***************986 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1e-05
                 -TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  24 lsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 l++ + L+L++N+l++l    ++ L  L+ LdL++N+L
  CCE31086.1 517 LPAITALNLRSNRLQSLA--GIEKLYPLERLDLRDNHL 552
                 899999***********5..****************98 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 8.4e-06
                 -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---G.GGGGGGTT--S-.EEE--SS- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNlltt.lspgafsgLpsLrsLdLsgNr 60 
                  t L+L++Nrl+sl     ++l  L+ LdL++N l   l+   + g p +r+  L+gN+
  CCE31086.1 520 ITALNLRSNRLQSLAG--IEKLYPLERLDLRDNHLADpLEVARLTGIPDIREVWLEGNP 576
                 5778888888888875..46688888888888877776877778888888877777776 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.2    0.0081        29       2      21 ..     448     467 ..     447     469 .. 0.91
   2 ?    3.9   0.1     0.033   1.2e+02       2      17 ..     473     488 ..     472     493 .. 0.77
   3 ?    4.8   0.1     0.016        58       2      17 ..     496     511 ..     495     515 .. 0.83
   4 ?    0.1   0.0      0.58   2.1e+03       4      13 ..     522     531 ..     519     538 .. 0.79
   5 ?    4.4   0.1     0.022        78       2      12 ..     542     552 ..     541     584 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0081
       LRR_1   2 LrhLdLsnnpllglppnsfq 21 
                 LrhL Ls n ++++p++s+ 
  CCE31086.1 448 LRHLCLSENAITSFPSSSLA 467
                 9***************9985 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.033
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 L +LdLs+n ++++p+
  CCE31086.1 473 LYSLDLSSNLFSQIPD 488
                 669********76664 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.016
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 Lr L+Ls++ +++l++
  CCE31086.1 496 LRALNLSYCMIDSLQS 511
                 99*******9966654 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.58
       LRR_1   4 hLdLsnnpll 13 
                  L+L++n+l 
  CCE31086.1 522 ALNLRSNRLQ 531
                 69*****993 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.022
       LRR_1   2 LrhLdLsnnpl 12 
                 L++LdL++n+l
  CCE31086.1 542 LERLDLRDNHL 552
                 89*******98 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   3.5e-06     0.012      24     137 ..     476     590 ..     438     595 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.5e-06
       LRR_9  24 ldlrgykipvienlGatldqfdtidlsdndirkldgfPl..lkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsl 120
                 ldl ++ +++i +  atl  + +++ls   i  l+++    l  + +l l +nr+  +a g+e+  P le l l +n+l +  ++  l+ +++++ + l
  CCE31086.1 476 LDLSSNLFSQIPDSLATLAALRALNLSYCMIDSLQSLARnpLPAITALNLRSNRLQSLA-GIEKLYP-LERLDLRDNHLADPLEVARLTGIPDIREVWL 572
                 899999999999999999999999999999999998864338999999******98876.7888777.999**********99**************** PP

       LRR_9 121 lknpvtn.kkeyrlyviy 137
                   np t+ +k+yr  v +
  CCE31086.1 573 EGNPFTRtHKDYRVTVFN 590
                 ***998526789988765 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.45   1.6e+03       4      16 ..     447     459 ..     446     460 .. 0.88
   2 ?    2.2   0.7     0.067   2.4e+02       3      14 ..     471     482 ..     469     484 .. 0.83
   3 ?    1.8   0.0     0.093   3.3e+02       5      15 ..     496     506 ..     495     508 .. 0.87
   4 ?    2.0   0.0     0.075   2.7e+02       5      16 ..     520     531 ..     518     535 .. 0.88
   5 ?    5.5   0.0    0.0057        20       5      17 ..     542     554 ..     538     555 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.45
       LRR_6   4 hLteLdLsgNdIg 16 
                  L++L Ls N I+
  CCE31086.1 447 FLRHLCLSENAIT 459
                 69*********98 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.067
       LRR_6   3 thLteLdLsgNd 14 
                 ++L +LdLs+N 
  CCE31086.1 471 NTLYSLDLSSNL 482
                 78899******6 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.093
       LRR_6   5 LteLdLsgNdI 15 
                 L++L+Ls++ I
  CCE31086.1 496 LRALNLSYCMI 506
                 89******966 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.075
       LRR_6   5 LteLdLsgNdIg 16 
                 +t+L+L++N ++
  CCE31086.1 520 ITALNLRSNRLQ 531
                 599******986 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.0057
       LRR_6   5 LteLdLsgNdIgD 17 
                 L+ LdL++N++ D
  CCE31086.1 542 LERLDLRDNHLAD 554
                 899*******988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 5606.78
//
Query:       CCE31087.1  [L=505]
Description: probable alpha-L-arabinofuranosidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-141  471.5   6.8   1.6e-141  471.2   6.8    1.1  1  ArabFuran-catal  Alpha-L-arabinofuranosidase B, catalytic
    4.1e-45  153.2   0.0    8.3e-45  152.2   0.0    1.5  1  AbfB             Alpha-L-arabinofuranosidase B (ABFB) domain


Domain annotation for each model (and alignments):
>> ArabFuran-catal  Alpha-L-arabinofuranosidase B, catalytic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  471.2   6.8  1.8e-145  1.6e-141       1     317 []      18     337 ..      18     337 .. 0.97

  Alignments for each domain:
  == domain 1  score: 471.2 bits;  conditional E-value: 1.8e-145
  ArabFuran-catal   1 PCDiyaaagtPCvaAhsttRaLyasykGpLyqvqRasdnattdiavlsag....gvanaaaqdsFCagttCvitiiYDqsgkgndltqapadga 90 
                      PCD+ya+ gtPCvaAhsttRaLy+sy+G+Lyqv Rasd+ t di++++a     g+an+a qd+FCa+ttC+i+iiYDqsgkgndl + p+ ga
       CCE31087.1  18 PCDLYASRGTPCVAAHSTTRALYSSYTGSLYQVVRASDGLTVDITPITAQgaarGIANSAVQDTFCAQTTCLISIIYDQSGKGNDLRRGPG-GA 110
                      9**********************************************776666699*********************************97.88 PP

  ArabFuran-catal  91 esgtaansadklakataapvtlggskaygvlisagtgyrndktkgvatgdeaegiYavldgthyndgCCfdYGnaetsnkddgngemeaiyfgn 184
                      ++g++a+ +d+la+a+ apvtl+ +++ygv+is+gtgyr d++kg+a+gd++eg+Yavldgthynd CCfdYGnaetsn+d+g g+meaiy+gn
       CCE31087.1 111 FDGPEADYSDHLASANGAPVTLNRHRVYGVFISPGTGYRIDNAKGIAIGDQPEGMYAVLDGTHYNDVCCFDYGNAETSNTDTGPGHMEAIYYGN 204
                      9********************************************************************************************* PP

  ArabFuran-catal 185 aavfgkgdgsgPWveaDlEnglfsggnkkakneenksieskfvtallkgsesnkfaikggdaqs.geLttlydgarpe.egYnpmkkegaiiLg 276
                      ++++g+g+gsgPW++aDlE+glfsg+ +k  n+ ++s++++fvta++kg++   ++i+ggd+qs ++L+t+y+g+rp+ +gY+pm+kegai+Lg
       CCE31087.1 205 NTFWGSGAGSGPWIMADLEDGLFSGHGPKI-NTGDPSLSYRFVTAVTKGRP-GYWSIRGGDSQStAKLSTYYSGPRPSgDGYDPMNKEGAIVLG 296
                      ****************************96.89****************65.*********997468***********99************** PP

  ArabFuran-catal 277 eGGDnsnaaqgtFyEGavvagapsdatdnavqanivaagYa 317
                      +GGDnsn++qgtFyEG++++g+psda+d+avqa+++aa+Ya
       CCE31087.1 297 IGGDNSNGGQGTFYEGVMTNGYPSDAADDAVQADVAAAKYA 337
                      ***************************************95 PP

>> AbfB  Alpha-L-arabinofuranosidase B (ABFB) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.0   9.3e-49   8.3e-45       2     140 .]     356     500 ..     355     500 .. 0.92

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 9.3e-49
                 EEECTTSTTEEEEEET.TCE..EEECE--TTSSHCCHHHC-EEEEE-SS-TTCEEEEESSSTTEEEEEETTEEEEEE--SSHHHHHCT-EEEEE-TS.T CS
        AbfB   2 rltsanytdrYlrhsn.ksa..vltevvsssssaalkqdatftvvaGLadsscvSfesvntpgsyLRhsnfrlrleandgsklFkeDATFcpqaGlads 97 
                 r t++++t+rY+ h + +s+  +    +s+ +++ lk++a +tv+aGLa+s+c+Sfes +tpgs+LRh+++r++l++ndgsk+F eDATFc++aGl+ +
  CCE31087.1 356 RPTAKCCTTRYMIHGGpDSGgsISFMDLSTYNQEPLKRRARWTVRAGLANSACYSFESFDTPGSFLRHYEYRVVLRPNDGSKQFGEDATFCTSAGLNGQ 454
                 67899*********764333224445589999****************************************************************668 PP

                 TCEEEEESSSTTEEEEEETTEEEEEESS-....G-SCCHHHHT-EEE CS
        AbfB  98 gsvsleSynypgrylRhynnelyiasngg....datasfraDatfvv 140
                 g+ s++S+n p+r +R y + l + sngg    d +a++++D+++++
  CCE31087.1 455 GN-SIRSWNNPTRLWRLYFDGLFVGSNGGvygfDGQAEYNDDVSWAI 500
                 88.******************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3540.59
//
Query:       CCE31088.1  [L=317]
Description: uncharacterized protein CPUR_04939 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2431.71
//
Query:       CCE31089.1  [L=466]
Description: related to pyruvate dehydrogenase complex protein X precursor, dihydrolipoamide acetyltransferase comp [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-21   74.0   0.7    1.6e-20   72.7   0.7    1.7  1  Biotin_lipoyl    Biotin-requiring enzyme
    1.3e-07   31.8   0.0    4.2e-07   30.2   0.0    1.9  1  E3_binding       e3 binding domain
    0.00059   19.6   0.0     0.0045   16.8   0.0    2.5  2  Biotin_lipoyl_2  Biotin-lipoyl like
     0.0081   16.8   0.3       0.39   11.5   0.0    2.7  2  HlyD_3           HlyD family secretion protein
  ------ inclusion threshold ------
       0.14   10.9   0.4       0.36    9.6   0.4    1.6  1  YqfD             Putative stage IV sporulation protein YqfD
       0.39   10.1   3.5        2.5    7.5   0.1    2.3  2  Endostatin       Collagenase NC10 and Endostatin


Domain annotation for each model (and alignments):
>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.7   5.4e-24   1.6e-20       2      73 .]      37     110 ..      36     110 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 5.4e-24
                    EEEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEE.E-TTCEEEEE CS
  Biotin_lipoyl   2 eiksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdt.vevgdllaki 73 
                     +++P+++++++eg +++++vk+G++ +ag+vl+e+e++K++m++ea+++G+v +i++++G++ ++vg+ +a++
     CCE31089.1  37 NFSMPALSPTMTEGnIATWKVKEGETYSAGDVLLEIETDKANMDVEAQEDGIVMKIMAQDGAKaIQVGTRIAVL 110
                    689************************************************************9*****99986 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.4e-10   4.2e-07       2      36 .]     175     212 ..     175     212 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.4e-10
                 BE-HHHHHHHHHCT-...-TTTS---CTTTBE-HHHHC CS
  E3_binding   2 lAsPaaRklAkelGi...dLsdvkGtGpgGRItkeDVl 36 
                 +++P++  l +++G+     s +k+tGp+GR++k+DVl
  CCE31089.1 175 PLMPSVETLVHQHGLskdVVSRIKPTGPNGRLLKGDVL 212
                 589************665556778*************7 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.5e-06    0.0045      10      37 ..      49      76 ..      43      99 .. 0.88
   2 ?   -1.6   0.0      0.83   2.5e+03      26      33 ..     208     215 ..     207     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.5e-06
  Biotin_lipoyl_2 10 sGrVaqlnVkdGqrVkaGdvLaelDsra 37
                      G +a++ Vk+G    aGdvL+e+++++
       CCE31089.1 49 EGNIATWKVKEGETYSAGDVLLEIETDK 76
                     699*********************9876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.83
  Biotin_lipoyl_2  26 aGdvLael 33 
                      +GdvLa l
       CCE31089.1 208 KGDVLAHL 215
                      8****987 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00013      0.39       7      40 ..      49      83 ..      46      84 .. 0.86
   2 ?    4.0   0.1     0.027        79       2      33 ..      81     113 ..      80     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
      HlyD_3  7 dGvvvelnveegevvqagdelleiipp.dtllvea 40
                 G ++ ++v+ege  +agd+llei  + +++ vea
  CCE31089.1 49 EGNIATWKVKEGETYSAGDVLLEIETDkANMDVEA 83
                699*********************98745666776 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.027
      HlyD_3   2 lrApvdGvvvelnv.eegevvqagdelleiipp 33 
                 + A  dG+v ++ +    + +q g++++ ++  
  CCE31089.1  81 VEAQEDGIVMKIMAqDGAKAIQVGTRIAVLAEA 113
                 6799********99677889*******999875 PP

>> YqfD  Putative stage IV sporulation protein YqfD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.4   0.00012      0.36     177     212 ..      71     106 ..      51     109 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00012
        YqfD 177 eieekdepcnivAkkdGvItkvivesGeplvkegdt 212
                 eie +++  ++ A++dG++ k+++++G +++++g  
  CCE31089.1  71 EIETDKANMDVEAQEDGIVMKIMAQDGAKAIQVGTR 106
                 5677778899***********************986 PP

>> Endostatin  Collagenase NC10 and Endostatin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.5     0.014        42     165     189 ..       6      30 ..       1      33 [. 0.87
   2 ?    7.5   0.1   0.00084       2.5      36     117 ..      93     186 ..      84     280 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.014
  Endostatin 165 adflCfqqAravglkgtfraflSsk 189
                 a  +C  +Ar vg +g +r f Ss 
  CCE31089.1   6 AGAACRASARLVGNRGVYRGFTSSA 30 
                 6679*******************96 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00084
  Endostatin  36 rvrdgwrkvqlgelipllselek.............kenevaavqpsPvvksskerlvllearrktksskesvkakekeaskeeleekaekkvee 117
                  ++dg + +q+g+ i++l+e  +             +++  a++ p+P+ +  ++ ++ + ++++ k+s+++++++e ++++ +l ++ e+ v++
  CCE31089.1  93 MAQDGAKAIQVGTRIAVLAEAGDdiktleipedakpQQSAEASSAPPPAEERGSS-ESAQDKQSSPKKSTAGSTSNEVHEQRYPLMPSVETLVHQ 186
                 4679***********9965554445555555555435555566666566555555.333333333444444444444334444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3299.31
//
Query:       CCE31090.1  [L=250]
Description: uncharacterized protein CPUR_04941 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1888.29
//
Query:       CCE31091.1  [L=478]
Description: related to phosphatidylinositol phospholipase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-10   40.3   0.0    3.1e-10   39.8   0.0    1.2  1  PI-PLC-X  Phosphatidylinositol-specific phospholipase C, X do


Domain annotation for each model (and alignments):
>> PI-PLC-X  Phosphatidylinositol-specific phospholipase C, X domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   1.7e-14   3.1e-10       4     144 ..     157     300 ..     155     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1.7e-14
                 EEETTTTTTS-SHHHHHTHHHH.---SS-HHHHHHTT--EEEEEE-....TT.SEEEETTEEE....EEEHHHHHHHHHHHHHHSTT--EEEEEEETT. CS
    PI-PLC-X   4 Plshyfissshntyltgnqlss.essveayrnaLlrGcRcvEidvw.dgedeepvvlhgytlt...kkikfrdvleaikdyafktselPvivsLevhc. 96 
                 Pl+  +i   hn++ + + l s ++++  ++++L++G+R+++i+v  + +d+ + ++hg + +    +  f d+le +++++ ++ ++ v++s + +  
  CCE31091.1 157 PLTLLSIPGTHNSPTCHRALPSvRCQATTIEEQLENGVRFLDIRVSaKPDDDALALVHGAFPIsmsGTKYFGDMLEDVYRFLEENPSEAVLMSVKREGt 255
                 7777788889****9999997637**********************4455557999***99884434567*************************9973 PP

                 T-THHHHHHHHHHHHGGGGB-EEETT-.------BCCCCTT-EEEEE. CS
    PI-PLC-X  97 saeqqekmaeilkeifgdlLleeplekeeskelpspeelkgKilikvk 144
                  + ++ +m ++lk+ + d+  ++ ++   + ++p++ e +gKi++ ++
  CCE31091.1 256 GKATDGQMGHHLKNRYTDKRADRWWT---DPRVPTLGEARGKIVLVRR 300
                 56677899999999999987776665...699************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3686.06
//
Query:       CCE31092.1  [L=450]
Description: uncharacterized protein CPUR_04943 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.066   13.4   0.0        0.2   11.8   0.0    1.8  2  B9-C2     Ciliary basal body-associated, B9 protein


Domain annotation for each model (and alignments):
>> B9-C2  Ciliary basal body-associated, B9 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.57     1e+04     121     134 ..     172     185 ..     162     196 .. 0.80
   2 ?   11.8   0.0   1.1e-05       0.2      84     107 ..     401     424 ..     396     430 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.57
       B9-C2 121 slleelrsfflggs 134
                 ++++++r+ff+ g+
  CCE31092.1 172 NVSQAMRAFFVSGQ 185
                 78899999999876 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.1e-05
       B9-C2  84 slDswgrerveGYGvlalPtspGs 107
                 ++D++g+++ eGYG+++lP+s+G 
  CCE31092.1 401 EMDCLGSSDPEGYGTMSLPMSSGA 424
                 579******************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3486.04
//
Query:       CCE31093.1  [L=184]
Description: uncharacterized protein CPUR_04944 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1361.69
//
Query:       CCE31094.1  [L=74]
Description: uncharacterized protein CPUR_04945 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 525.51
//
Query:       CCE31095.1  [L=395]
Description: probable methionine adenosyltransferase ETH-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-65  218.3   0.0    6.2e-65  217.4   0.0    1.5  1  S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal 
    1.6e-44  151.0   0.0    2.9e-44  150.2   0.0    1.4  1  S-AdoMet_synt_M  S-adenosylmethionine synthetase, central dom
    1.8e-43  147.2   0.4    7.7e-43  145.2   0.1    2.1  2  S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal 
  ------ inclusion threshold ------
       0.17   10.6   0.2       0.68    8.6   0.1    1.8  2  AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synt


Domain annotation for each model (and alignments):
>> S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.4   0.0   1.4e-68   6.2e-65       1     138 []     251     389 ..     251     389 .. 0.99

  Alignments for each domain:
  == domain 1  score: 217.4 bits;  conditional E-value: 1.4e-68
                      S-TTTTS-EETTS-TTTTTTTTSS---S---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEEEEE-S-BSS-HHHH CS
  S-AdoMet_synt_C   1 iGgpkgdaGltgrkiivdtYgglaahgggafsgKdptkvDrsaayaaryvaknlvaaglakkvevqlsYaigvaepvsisvetfgtekvseeei 94 
                      iGgp+gdaGltgrkiivdtYgg++ahgggafsgKd +kvDrsaay+ r++ak+lv+agla++ +vqlsYaigvaep+si+v+t+gt++ s++e+
       CCE31095.1 251 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFSKVDRSAAYVGRWIAKSLVHAGLARRALVQLSYAIGVAEPLSIYVDTYGTSTKSSDEL 344
                      8********************************************************************************************* PP

                      HHHHHHH----HHHHHHHHTTTSS--TGGGSS-SSS--.T-TTS. CS
  S-AdoMet_synt_C  95 aeivkevfdlrpaaiieeldLkkpiykktaayghfgre.elpwek 138
                      +ei+ ++fdlrp+ i++el+L++piy +ta++ghfg + +++we+
       CCE31095.1 345 VEIILKNFDLRPGVIVRELSLDRPIYLQTAKNGHFGTNqSFTWEQ 389
                      ************************************98689**97 PP

>> S-AdoMet_synt_M  S-adenosylmethionine synthetase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.0   6.4e-48   2.9e-44       2     120 .]     129     249 ..     128     249 .. 0.96

  Alignments for each domain:
  == domain 1  score: 150.2 bits;  conditional E-value: 6.4e-48
  S-AdoMet_synt_M   2 igAgDqGimfGYAtdeteelmPlpillahklaerlaelrkegeleylrpDaKsqvtveYee...elkpvrvdtvvistqhdeevsqeklredlk 92 
                      +gAgDqGimfGYAtdet+el Pl+++lahkl   ++++r++g+l++lrpD+K+qvtveY++   +  p+rv+tvv+s+qh++++++e+lr+++ 
       CCE31095.1 129 LGAGDQGIMFGYATDETPELFPLTLQLAHKLNAAMSAARRDGTLPWLRPDTKTQVTVEYKHdngAVVPLRVHTVVVSAQHSPDITTEQLRKEIL 222
                      69*********************************************************65567899*************************** PP

  S-AdoMet_synt_M  93 ekvikkvlkeelldekktkllinptGkF 120
                      ek+ik+ +++++ld+k t ++i+p+G F
       CCE31095.1 223 EKIIKASIPAKYLDDK-TIYHIQPSGLF 249
                      *********9999885.*********88 PP

>> S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   0.1   1.7e-46   7.7e-43       2      99 .]      17     114 ..      16     114 .. 0.99
   2 ?   -0.6   0.0      0.48   2.2e+03       9      32 ..     204     228 ..     175     240 .. 0.76

  Alignments for each domain:
  == domain 1  score: 145.2 bits;  conditional E-value: 1.7e-46
  S-AdoMet_synt_N   2 ylftsesVseGHPDkvadqisdaildailkedpkarvacetlvttglvvvageittkakvdiekivrevikeigYekeelgfdaktcevlvale 95 
                      +lftsesV eGHPDk+adq+sdailda+l+edp ++vacet+++tg+v+v+geittkak+d++k+vr+++++igY+++++gfd+kt+++lva+e
       CCE31095.1  17 FLFTSESVGEGHPDKIADQVSDAILDACLAEDPLSKVACETATKTGMVMVFGEITTKAKLDYQKVVRDAVRDIGYDDSSKGFDYKTLNLLVAIE 110
                      89******************************************************************************************** PP

  S-AdoMet_synt_N  96 eqsp 99 
                      +qsp
       CCE31095.1 111 QQSP 114
                      ***7 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.48
  S-AdoMet_synt_N   9 VseGH.PDkvadqisdaildailke 32 
                      Vs  H PD  ++q+  +il++i+k+
       CCE31095.1 204 VSAQHsPDITTEQLRKEILEKIIKA 228
                      4444547777888888888877765 PP

>> AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synthetase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00015      0.68      22      41 ..      22      41 ..      19      57 .. 0.86
   2 ?   -1.1   0.0      0.14   6.1e+02      90     168 ..      69     145 ..      51     185 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00015
                     EEE-TTSHHHHHHHHHHHHH CS
  AdoMet_Synthase 22 ErKGiGHPDsiaDgiaeavs 41
                     E  G GHPD+iaD++++a+ 
       CCE31095.1 22 ESVGEGHPDKIADQVSDAIL 41
                     66799***********9985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.14
                      EEEEEE.EEE--HHHHHHHHHHHH.HHHH-SS--TTTSEEEEEEEEEEEEHHHHHHCH-SS...-BESSSEEEEEEES--H CS
  AdoMet_Synthase  90 ratkevegekipveeialeaakey.lkenlraldlekdvivdvklgkgsadLkdvferkkk.evplaNDtSfgvgyaplse 168
                        t+   + k+++++++ +a+++   +++ + +d +  + + v +++ s d+ +  + +++ e   a D  +  gya   +
       CCE31095.1  69 EITT---KAKLDYQKVVRDAVRDIgYDDSSKGFDYK-TLNLLVAIEQQSPDIAQGLHYDEAlERLGAGDQGIMFGYATDET 145
                      4444...67899999999999997345556667765.67888888888888887766666656677888888888876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3033.71
//
Query:       CCE31096.1  [L=320]
Description: related to Gop-2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-71  240.7   0.0    1.4e-65  221.4   0.0    2.0  2  ATP_bind_1      Conserved hypothetical ATP binding protein
    0.00056   19.8   0.0     0.0016   18.3   0.0    1.7  2  CLP1_P          mRNA cleavage and polyadenylation factor CLP1
     0.0013   18.8   0.0      0.003   17.6   0.0    1.6  1  AAA_14          AAA domain
     0.0032   17.2   0.0     0.0062   16.3   0.0    1.5  1  AAA_29          P-loop containing region of AAA domain
     0.0039   16.9   0.0     0.0064   16.2   0.0    1.4  1  AAA_24          AAA domain
     0.0048   16.8   0.1       0.17   11.8   0.0    2.3  2  RsgA_GTPase     RsgA GTPase
      0.007   16.7   0.0      0.015   15.7   0.0    1.5  1  RNA_helicase    RNA helicase
  ------ inclusion threshold ------
       0.01   16.4   0.0      0.031   14.8   0.0    1.9  1  AAA_18          AAA domain
      0.011   16.0   0.0      0.024   14.9   0.0    1.5  1  AAA_22          AAA domain
      0.012   16.1   0.0      0.026   15.1   0.0    1.5  1  ABC_tran        ABC transporter
      0.021   14.4   0.0        4.5    6.7   0.0    2.3  2  GTP_EFTU        Elongation factor Tu GTP binding domain
      0.021   14.9   0.0      0.036   14.1   0.0    1.7  1  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain
      0.034   13.1   0.0       0.11   11.4   0.0    1.7  2  AAA_10          AAA-like domain
       0.04   14.1   0.0      0.066   13.4   0.0    1.4  1  AAA_33          AAA domain
       0.07   12.9   0.0       0.12   12.1   0.0    1.4  1  Cytidylate_kin  Cytidylate kinase
        0.1   12.2   0.1          4    7.0   0.0    2.2  2  cobW            CobW/HypB/UreG, nucleotide-binding domain
       0.11   12.6   0.0       0.25   11.4   0.0    1.7  1  MMR_HSR1        50S ribosome-binding GTPase
       0.11   12.1   0.0       0.18   11.4   0.0    1.3  1  SRP54           SRP54-type protein, GTPase domain
       0.13   12.7   0.1       0.79   10.1   0.0    2.2  3  AAA_16          AAA ATPase domain


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.4   0.0   1.5e-68   1.4e-65       1     185 [.       8     198 ..       8     217 .. 0.95
   2 !   17.5   0.0   2.8e-06    0.0027     194     241 .]     250     300 ..     227     300 .. 0.86

  Alignments for each domain:
  == domain 1  score: 221.4 bits;  conditional E-value: 1.5e-68
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmedlglgpngalvvaleflresldwldeeleke.eddyllfDt 98 
                 ++GpaG+GK+tf+ al+ +l+l+ rs  +vNLDPAae+++  +++di+eli+l+d+me+ glgpng+l++++efl+e+ldwl e+l+   e+ +++fD+
  CCE31096.1   8 IMGPAGAGKSTFCAALITHLQLNRRSAFYVNLDPAAETFEHTPDLDIKELISLRDAMEEVGLGPNGGLIYCFEFLMENLDWLTEALDSLtEEYLIIFDM 106
                 79************************************************************************************9986778999*** PP

  ATP_bind_1  99 PGQielfthseslakiveeLes....efalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkek.lekeleffedvea 185
                 PGQiel+th++ l  +v+ L +    ++++ +vyL++++++ d +kf+ g+lsa+saml+le+Ph++vl+k+Dl+k++ ++k+l++f  ++ 
  CCE31096.1 107 PGQIELYTHVPILPTLVKYLCQpgalDIRMAAVYLLEATFVVDRAKFFAGTLSAMSAMLMLEVPHINVLSKMDLVKDQvKKKDLKRFLTPDV 198
                 ********************99888999************************************************99********997764 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 2.8e-06
  ATP_bind_1 194 e....ekykklaeaiaelleefalvlrflplssekeesiedllslidealqe 241
                 +      +++l++a+a l+e f+++ + l l++ +e+s+  +ls+id+++q+
  CCE31096.1 250 QimggASFRRLNRAVAGLIESFSMI-NYLKLDVTNEDSVASILSYIDDCVQY 300
                 1455567899***************.***********************996 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.7e-06    0.0016       1      35 [.      10      44 ..      10      49 .. 0.88
   2 ?   -2.3   0.0       3.5   3.3e+03     125     163 ..     163     198 ..     156     214 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.7e-06
      CLP1_P  1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGqs 35
                Gp  +GKST+++ L+  +  + r+  yv+lD+   
  CCE31096.1 10 GPAGAGKSTFCAALITHLQLNRRSAFYVNLDPAAE 44
                8999*************988888888*****9766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.5
      CLP1_P 125 liealepdvvvvldqeellnelkrdlplskvkvvklpks 163
                 ++ +le+ ++ vl++ +l ++     +++++k + +p +
  CCE31096.1 163 AMLMLEVPHINVLSKMDLVKDQV---KKKDLKRFLTPDV 198
                 56678888888888855544443...3444555555555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.2e-06     0.003       6      51 ..       7      53 ..       4      76 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.2e-06
      AAA_14  6 vitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.k 51
                +i+G+  +GK+t++  li +l  +++s +y+nld   ++ + +p+ +
  CCE31096.1  7 MIMGPAGAGKSTFCAALITHLQLNRRSAFYVNLDPAAETFEHTPDlD 53
                799***************9999************9877555555433 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.6e-06    0.0062      23      50 ..       5      31 ..       1      37 [. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.6e-06
      AAA_29 23 gatlltGpsGsGKSTllDAiqalLvpak 50
                g t+++Gp G+GKST+  A+++ L  ++
  CCE31096.1  5 G-TMIMGPAGAGKSTFCAALITHLQLNR 31
                4.9*************999998776555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.8e-06    0.0064       5      60 ..       6      82 ..       2     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.8e-06
      AAA_24  5 iliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdieswedfldevvel..............a 60
                 +i+Gp+g+GK+t+++ l         ++++++++  +   + +   di+ ++ ++d+++e+               
  CCE31096.1  6 TMIMGPAGAGKSTFCAALithlqlnRRSAFYVNLDPAAETFEHTPDLDIKELISLRDAMEEVglgpnggliycfefL 82
                58*********************99999********99999999999999999999999887666665555555442 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00018      0.17     102     126 ..       6      30 ..       1      35 [. 0.87
   2 ?    2.8   0.0      0.11     1e+02      46      69 ..     168     191 ..     148     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
                  EEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelk 126
                  ++++G+ G+GKSt+  al+ +l+l+
   CCE31096.1   6 TMIMGPAGAGKSTFCAALITHLQLN 30 
                  789***************9988765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.11
                  T-EEEEEEE-GGG--HHHHHHHHH CS
  RsgA_GTPase  46 giepvivlnKiDlleeeeeleelk 69 
                  +++ + vl+K+Dl++++ + ++lk
   CCE31096.1 168 EVPHINVLSKMDLVKDQVKKKDLK 191
                  5666779********999544444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.6e-05     0.015       2      41 ..       7      43 ..       6      50 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.6e-05
  RNA_helicase  2 wlyGpsgeGKStlakeLakallkklklkkkdsvys.rnped 41
                  ++ Gp+g GKSt++  L+++l+    l++++ +y+   p+ 
    CCE31096.1  7 MIMGPAGAGKSTFCAALITHLQ----LNRRSAFYVnLDPAA 43
                  689*************998888....777788888655555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.3e-05     0.031       2      35 ..       7      38 ..       7     113 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.3e-05
      AAA_18  2 lltGtpGvGKttlakeLskrlgfgvnlrdvaken 35
                +++G++G+GK+t++ +L  +l    n r+ ++ n
  CCE31096.1  7 MIMGPAGAGKSTFCAALITHL--QLNRRSAFYVN 38
                699**************8888..55555555443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.5e-05     0.024       8      48 ..       6      40 ..       3      65 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.5e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlp 48
                ++++G++G+GK+t ++ l   l+        r++ ++v+l 
  CCE31096.1  6 TMIMGPAGAGKSTFCAALITHLQLN------RRSAFYVNLD 40
                589****************999654......6666666654 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   2.7e-05     0.026      14      36 ..       6      28 ..       4      52 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.7e-05
                EEEEESTTSSHHHHHHHHTTSS- CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllk 36
                + i+G+ GaGKSt++++l+ +l+
  CCE31096.1  6 TMIMGPAGAGKSTFCAALITHLQ 28
                579**************998876 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0      0.01       9.6       7      29 ..       7      29 ..       4      48 .. 0.87
   2 ?    6.7   0.0    0.0048       4.5     111     141 ..     157     187 ..     141     298 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.01
                EEEESTTSSHHHHHHHHHHHTTS CS
    GTP_EFTU  7 giighvDhGKtTLtdrLlyktga 29
                +i+g   +GK+T++ +L+++++ 
  CCE31096.1  7 MIMGPAGAGKSTFCAALITHLQL 29
                699**************998765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0048
                 HHHHHHHHHHTTTEEEEEEESCGSTHHHHHH CS
    GTP_EFTU 111 teevlrlalkegvpiivfiNKmDrlkaelke 141
                 t   +  +l ++vp i ++ KmD +k+++k+
  CCE31096.1 157 TLSAMSAMLMLEVPHINVLSKMDLVKDQVKK 187
                 66778889999**************877765 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.8e-05     0.036       8      55 ..      12     130 ..       6     295 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.8e-05
                 TTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH.....HTTEB-HHHH............................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxx............................................... RF
        CbiA   8 GGvGKTtlaanLaralarrglrVllvDaDpqannlai.....leglendiep............................................... 54 
                  G+GK+t++a+L++ l+ +++  + v +Dp a+  ++     +       ++                                               
  CCE31096.1  12 AGAGKSTFCAALITHLQLNRRSAFYVNLDPAAETFEHtpdldI-------KElislrdameevglgpnggliycfeflmenldwltealdslteeylii 103
                 59*****************************988875433221.......2233344455566666666666666666666666666555555555555 PP

                 ..........................C CS
                 ..........................x RF
        CbiA  55 ..........................d 55 
                                           +
  CCE31096.1 104 fdmpgqielythvpilptlvkylcqpG 130
                 555555555555555555555555550 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.11      23      63 ..       5      47 ..       2      71 .. 0.82
   2 ?   -1.7   0.0       1.1   1.1e+03     311     325 ..     272     286 ..     259     294 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
      AAA_10 23 asliiGdlGnGKSvlakllvlyisllggkalii..Dpkkerek 63
                +++i+G+ G+GKS +   l+  ++l    a+++  Dp +e+ +
  CCE31096.1  5 GTMIMGPAGAGKSTFCAALITHLQLNRRSAFYVnlDPAAETFE 47
                579***************************9986688888554 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
      AAA_10 311 kvLeflgldvededn 325
                 +++++l+ldv++ed+
  CCE31096.1 272 SMINYLKLDVTNEDS 286
                 6799******99987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.9e-05     0.066       3      39 ..       7      48 ..       6     107 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.9e-05
      AAA_33  3 llvGlpGsGKstlaerllkklg.....avllssdtlrrrlfg 39
                ++ G++G+GKst+   l+ +l+     a+ ++ d + ++ + 
  CCE31096.1  7 MIMGPAGAGKSTFCAALITHLQlnrrsAFYVNLDPAAETFEH 48
                789**************9888877788777777765555544 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.12       3      25 ..       8      30 ..       6      66 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
                    EE-STTSSHHHHHHHHHHHHT-E CS
  Cytidylate_kin  3 iDGPagsGKssvaralaeklglk 25
                    i GPag+GKs+ + al ++l+l+
      CCE31096.1  8 IMGPAGAGKSTFCAALITHLQLN 30
                    67**************9999876 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0042         4       3      28 ..       6      32 ..       4      39 .. 0.76
   2 ?    3.1   0.0     0.067        64     117     162 ..     146     190 ..     122     196 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0042
                EEEEESTTCCHHHHHHHHH.CT--SS- CS
        cobW  3 tvltGflGsGKTtLlnhll.enraglk 28
                t++ G+ G+GK+t+  +l+ + + +++
  CCE31096.1  6 TMIMGPAGAGKSTFCAALItHLQLNRR 32
                7899**********9999954444444 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.067
                 EEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHH CS
        cobW 117 avvDaknleaeeekieekaedqlaaadllvlnKtDlldeeallekl 162
                 +vvD +++  +++ ++  a  +l++  + vl+K+Dl++++ + + l
  CCE31096.1 146 FVVDRAKF-FAGTLSAMSAMLMLEVPHINVLSKMDLVKDQVKKKDL 190
                 67777777.46677777788899999999*********99544555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00027      0.25       3      56 ..       7     109 ..       6     177 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00027
                 EEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE..................................................EEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke..................................................iel 50 
                 +i+G   +GKSt+  al+   +    +   + +d+  +++++   +                                                  +++
  CCE31096.1   7 MIMGPAGAGKSTFCAALITHlQLNRRSAFYVNLDPAAETFEHT--PdldikelislrdameevglgpnggliycfeflmenldwltealdslteeyLII 103
                 799**************98744444555566677777766622..223444555556666666777777777777777777777777777777777777 PP

                 EECGGC CS
    MMR_HSR1  51 vDtpGl 56 
                  D+pG 
  CCE31096.1 104 FDMPGQ 109
                 777775 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.18       4      38 ..       6      40 ..       3      43 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvllvaaD 38
                ++++G+ GaGK t +a L  +l+ + +++  v +D
  CCE31096.1  6 TMIMGPAGAGKSTFCAALITHLQLNRRSAFYVNLD 40
                69********************9999888777766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00084      0.79      27      52 ..       6      31 ..       4      70 .. 0.76
   2 ?   -1.8   0.0       3.7   3.5e+03     138     152 ..      80      94 ..      39     101 .. 0.78
   3 ?   -1.3   0.0       2.7   2.6e+03      94     127 ..     231     268 ..     184     273 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00084
      AAA_16 27 vllsGesGvGKsslvrellralekdg 52
                +++ G++G GKs+   +l ++l+ ++
  CCE31096.1  6 TMIMGPAGAGKSTFCAALITHLQLNR 31
                5799************9999887663 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.7
      AAA_16 138 vlvlDdlqwadeasl 152
                  +++++l+w+ ea  
  CCE31096.1  80 EFLMENLDWLTEALD 94 
                 567889999988755 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.7
      AAA_16  94 leawrekleealaavpelagaea.........srllellkrll 127
                 ++a+++  +++  + p+++   +         +rl+++++ l+
  CCE31096.1 231 ADADADGEDDE--SRPPDD---KaqimggasfRRLNRAVAGLI 268
                 11222212222..222222...133356656677776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2300.73
//
Query:       CCE31097.1  [L=97]
Description: uncharacterized protein CPUR_04948 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 743.92
//
Query:       CCE31098.1  [L=860]
Description: uncharacterized protein CPUR_04949 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    8.5   7.3       0.53   10.2   3.2    2.2  2  Serglycin  Serglycin


Domain annotation for each model (and alignments):
>> Serglycin  Serglycin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.43   7.7e+03      90     107 ..     429     446 ..     413     471 .. 0.67
   2 ?   10.2   3.2     3e-05      0.53      88     109 ..     688     709 ..     664     720 .. 0.57

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.43
   Serglycin  90 dysgsgsGsGsGsGsgsg 107
                   sgs   + +GsG  + 
  CCE31098.1 429 RLSGSKQNASAGSGNPAP 446
                 337776666666665444 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 3e-05
   Serglycin  88 sedysgsgsGsGsGsGsgsgsg 109
                  +  s  g+ sGsGsGsgsgs+
  CCE31098.1 688 ENGSSSNGTSSGSGSGSGSGSD 709
                 4444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 6681.88
//
Query:       CCE31099.1  [L=518]
Description: probable nitrate transport protein crnA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-26   93.3  25.5    2.2e-26   92.6  25.5    1.4  1  MFS_1      Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.36    9.5  11.9        1.6    7.5   2.6    2.2  2  LacY_symp  LacY proton/sugar symporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6  25.5   2.5e-30   2.2e-26       2     352 ..      41     473 ..      40     512 .. 0.83

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 2.5e-30
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlga 99 
                 +++++l ++a++++ p+l+ ++++dl+++ ++i     + + +++++ +++G+l drfG+r+v+   l + +l  +l++l +++ + l+v+r++ G+  
  CCE31099.1  41 WMGFMLGFWAWYTFPPLLTATIKNDLHLTSTQIANSNIVSMCATLLLRFIAGPLCDRFGSRKVYSSLLMIGCLPiGLAPL-VTNATGLYVSRFFIGIL- 137
                 6899*******************************9999999********************************555555.477779**********9. PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg..........Wravfyilaivsllafvlfllllpeepperkrkspkeee 188
                 ga f  ++++ ++ f ++  g a++l ++  ++G  +++ + +++ +sl           Wr++f++  + +l + +  + +l  + p  ++++ +++ 
  CCE31099.1 138 GATFVPCQVWCTAFFDRNVVGTANALSGGWGNAGGGITYFIMPAVFDSLTmtqgmspskaWRVTFVVPLVCLLACSLG-MYFLCPDSPLGPWEERWQRV 235
                 89999*****************************************9999******************9999999884.34443333333333333333 PP

       MFS_1 189 ...............................................................kgtgpaplvpawkallkdpvlwillialllfffgfs 224
                                                                                + +++ ++++ w  +++ +     l+++++ ++ f 
  CCE31099.1 236 renldkarsgsstsaegtptligeplsqdeekasissknasrfcneaipdaaslaeaisvaqaETVVKPSFRDSWPVIFSLQ----TLFHVATYSCSFG 330
                 789999999999999999*********9999999999999999999999888888888866655555555555899999999....6777777766666 PP

       MFS_1 225 g...lltllplylqevlgls..glllaglllallalvgailallagrlsdr....lgr....rrrlllallllllaalglallavt.....ssavllll 305
                 g   + + l  y   v +++  +  +ag + a++++++++ ++l+g ++d     ++r    ++ +++++++l+ a l+ + l ++        + +l+
  CCE31099.1 331 GelaVNSILSAY--YVANFPhlSQTEAGNYAAIFGFLNVVTRPLGGVIADMlynnFNRnlwmKKLWIVTCGVLSGAMLITVGLVNPseangR-DLGTLI 426
                 675577777775..7777777746999999*********************87773335544566666666666666666666666566632.333333 PP

       MFS_1 306 .vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                  ++vl+ ++    +++ +al+ +++p +++g +sg+++  g++gg+++
  CCE31099.1 427 gLVVLAAVFIEAGNGANFALVPHVHP-SANGILSGITGAGGNVGGVVF 473
                 1444444466666999*********7.******************987 PP

>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.6   0.00017       1.6       9      92 ..      37     122 ..      29     150 .. 0.73
   2 ?    7.3   2.0   0.00019       1.7      31     126 ..     341     444 ..     318     480 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00017
   LacY_symp   9 fylfalffffyffimsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkel..lwvislllvlfapfli 92 
                 f+   + f++ f+ + ++ pl++  +k+ l+l+ t++     v    ++l++ + G + d++G +k    l +i  l + +ap++ 
  CCE31099.1  37 FFFSWMGFMLGFWAWYTFPPLLTATIKNDLHLTSTQIANSNIVSMCATLLLRFIAGPLCDRFGSRKVYssLLMIGCLPIGLAPLVT 122
                 3333445677788899999999999**********999887777778899999************964226667777777777654 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00019
   LacY_symp  31 pvwlkevlglsktetGivfsvislfsilfqplfGlisdklG..lkkel....lwvislllvlfapfliyv..fepllqlnilvGalvGgvflGlvy.sa 120
                 + ++++  +ls+te G   ++  ++ ++ +pl G+i d l   ++++l    lw+++   vl + +li v   +p       +G+l+G v l  v+ +a
  CCE31099.1 341 AYYVANFPHLSQTEAGNYAAIFGFLNVVTRPLGGVIADMLYnnFNRNLwmkkLWIVTC-GVLSGAMLITVglVNPSEANGRDLGTLIGLVVLAAVFiEA 438
                 56788999******************************99522333332222565554.5777888877644678777778899999998888887346 PP

   LacY_symp 121 gagaie 126
                 g ga  
  CCE31099.1 439 GNGANF 444
                 666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4033.71
//
Query:       CCE31100.1  [L=257]
Description: uncharacterized protein CPUR_04951 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-24   84.6   0.6    6.2e-24   84.6   0.6    2.4  2  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc
  ------ inclusion threshold ------
      0.048   13.4   0.2      0.078   12.7   0.2    1.4  1  DUF4448       Protein of unknown function (DUF4448)
       0.54   10.3   3.2         13    5.8   0.1    2.6  2  PepSY_2       Peptidase propeptide and YPEB domain
        1.7    7.8   9.1        1.8    7.7   9.1    1.1  1  SOG2          RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.6   1.4e-27   6.2e-24       2      93 .]      27     120 ..      26     120 .. 0.94
   2 ?   -0.9   3.8      0.62   2.8e+03      41      70 ..     167     195 ..     123     198 .. 0.63

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 1.4e-27
  GPI-anchored   2 sPssgevvtagkpvtitWkdsgtdp.gtvtlvLcagssnn.lksvktiasgiknsdgsytwtvpaslesggaYflqivsesnegiynySdrFti 93 
                   +P+++evv+ag+p+ itW++ ++   gtv+++L+ g+++n  +++++iasg+kns+++ytw+v+asl++++ Y+l ++ es+++i++yS++F+i
    CCE31100.1  27 TPKKDEVVAAGSPLVITWDAPAKYAsGTVSISLIGGPTQNsQQPIAEIASGVKNSAKTYTWNVDASLGKDNVYGLVFKLESDKQIFQYSNPFHI 120
                   8*******************996556************7748888*********************************999999********98 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.62
  GPI-anchored  41 lksvktiasgiknsdgsytwtvpaslesgg 70 
                    +s++t +s ++++ +++t tvp++++s++
    CCE31100.1 167 SNSETTPTSFVTKT-EEFTTTVPCTTNSAN 195
                   33344445555554.889999888877765 PP

>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   1.7e-05     0.078      23     107 ..      21     100 ..      13     188 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
     DUF4448  23 ssePFCtPkegselkvgktYyiTWdprfFdekenekVkihlsyvkestkekglkksffssdwlpnsdGfypltvdeewlkgkkse 107
                 ++ P+ tPk+++ +++g+   iTWd+      +  +V i l    ++ +++     +   + ++ns   y+++vd ++ k++ + 
  CCE31100.1  21 DFDPIYTPKKDEVVAAGSPLVITWDAPAK--YASGTVSISLIGGPTQNSQQ---PIAEIASGVKNSAKTYTWNVDASLGKDNVYG 100
                 578999*******************8755..45555555555555544443...33444556999*99******99998886554 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.5    0.0093        42       4      21 ..       4      21 ..       2      36 .. 0.73
   2 ?    5.8   0.1     0.003        13       8      46 ..     151     187 ..     142     191 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0093
     PepSY_2  4 lalalallaaaAlAgrrd 21
                 a+a++++aa AlA+ +d
  CCE31100.1  4 SAAAVLAFAASALAQTPD 21
                58899999999**95443 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.003
     PepSY_2   8 lallaaaAlAgrrdtdspkadwlpreklvakleaqGykv 46 
                 +++ +++A A   +t++p + +++ + +v+k e+   +v
  CCE31100.1 151 ATVSTTTAPA--AHTTTPSNSETTPTSFVTKTEEFTTTV 187
                 3344466666..999*****************9987665 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   9.1   0.00041       1.8     249     346 ..     142     240 ..      50     252 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00041
        SOG2 249 ssgnsaspaangaqsetsersasssgvqssasstPlgegstsp...p.galsrqslsttgststltsssksrsssrsntnasastprslattpappasa 343
                 ++   +s +a++++++++  ++++  ++s++ +tP +  ++++   + +  +++s+++tg+ + ++++s  ++s +++t ++  + +s a +p p+a a
  CCE31100.1 142 KTVLLSSTPATVSTTTAPA-AHTT--TPSNSETTPTSFVTKTEeftTtVPCTTNSANGTGAGAATDMQSAPTGSGSAPTASNPIMTKSGAISPVPTAGA 237
                 2233444445555555444.4544..344444444433333333345588899999999999999999999999****999999999999999977777 PP

        SOG2 344 esf 346
                 +s 
  CCE31100.1 238 SSI 240
                 764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2063.23
//
Query:       CCE31101.1  [L=511]
Description: related to S.pombe beta-transducin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-55  182.0  17.9      1e-09   38.9   0.4    7.3  7  WD40         WD domain, G-beta repeat
    1.4e-24   86.2   0.0    0.00072   19.8   0.0    6.4  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.1e-07   30.9   2.1       0.18   10.4   0.0    4.9  5  Nup160       Nucleoporin Nup120/160
    1.4e-07   30.8   0.1       0.25   10.3   0.0    4.6  6  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
     0.0069   15.5   0.0        4.8    6.1   0.0    3.8  5  VID27        VID27 C-terminal WD40-like domain
  ------ inclusion threshold ------
      0.012   15.1   0.0        4.1    6.8   0.0    3.1  3  DUF5046      Domain of unknown function (DUF5046)
       0.11   10.7   0.0        2.9    6.1   0.0    2.1  2  Frtz         WD repeat-containing and planar cell polarity ef
       0.14   11.4   0.0        1.1    8.5   0.0    2.1  2  WD40_like    WD40-like domain
       0.25   10.2   1.1        5.4    5.8   0.1    3.0  4  PALB2_WD40   Partner and localizer of BRCA2 WD40 domain
          3    7.7  11.5        3.7    7.4  11.5    1.2  1  SPX          SPX domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0     3e-11   5.4e-08       2      38 .]     143     180 ..     142     180 .. 0.92
   2 !   38.9   0.4   5.6e-13     1e-09       3      38 .]     186     222 ..     184     222 .. 0.94
   3 !   30.8   0.1     2e-10   3.5e-07       6      38 .]     243     276 ..     238     276 .. 0.93
   4 !   33.5   0.2   2.8e-11     5e-08       1      38 []     280     318 ..     280     318 .. 0.93
   5 !   26.7   0.0   3.9e-09     7e-06       1      38 []     322     361 ..     322     361 .. 0.88
   6 !   14.6   0.0   2.7e-05     0.048       4      38 .]     368     407 ..     365     407 .. 0.87
   7 !   11.9   0.0   0.00019      0.34       4      37 ..     415     447 ..     413     448 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 3e-11
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++  l GH ++v+ ++ sp+g+++as+s Dg+v++Wd
  CCE31101.1 143 KPVLALHGHtGPVSQVRISPNGKFVASASADGSVKLWD 180
                 5677899**888*************************9 PP

  == domain 2  score: 38.9 bits;  conditional E-value: 5.6e-13
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ tl GH  +v++la+ pd+++lasGsdD+ +r+Wd
  CCE31101.1 186 HIDTLVGHmAGVSCLAWTPDSNMLASGSDDKAIRLWD 222
                 677999******************************9 PP

  == domain 3  score: 30.8 bits;  conditional E-value: 2e-10
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  l+GH + +++lafsp g+ lasGs+D  v +Wd
  CCE31101.1 243 ALRGHhNYIHCLAFSPKGNVLASGSYDEAVFLWD 276
                 589**999*************************9 PP

  == domain 4  score: 33.5 bits;  conditional E-value: 2.8e-11
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+++r+l +H ++v++++f++dg+++as+s Dg +r+Wd
  CCE31101.1 280 GRLMRSLPAHsDPVSGIDFCRDGTLVASCSTDGLIRVWD 318
                 57899*****666*************************9 PP

  == domain 5  score: 26.7 bits;  conditional E-value: 3.9e-09
                 TEEEEEEESS..SS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH..ss.vtslafspdgawlasGsdDgtvriWd 38 
                 gqclrtl  H  ++ vt ++fsp+g+++++   D+ +r+Wd
  CCE31101.1 322 GQCLRTLV-HedNPaVTNVCFSPNGRFVLAFNLDNCIRLWD 361
                 79*****5.97666***************5457*******9 PP

  == domain 6  score: 14.6 bits;  conditional E-value: 2.7e-05
                 EEEEESS.SS...E.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ss...v.tslafspdgawlasGsdDgtvriWd 38 
                  +t+ GH +    +  ++ + +  +++as+s+Dg + +Wd
  CCE31101.1 368 KKTYQGHrNEkyaIgGCFGVLDGEPFVASASEDGDIVLWD 407
                 6899***9778899778889999999*************9 PP

  == domain 7  score: 11.9 bits;  conditional E-value: 0.00019
                 EEEEESSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGHssvtslafspdgawlasGsdDgtvriW 37 
                 +r+ tGH +v ++ ++ +g  +as++ D+ vr++
  CCE31101.1 415 QRVQTGHRGV-CFWVDVNGETMASAGQDHCVRLY 447
                 67778**779.888999***************98 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     4e-07   0.00072      22      76 ..     138     190 ..     136     199 .. 0.88
   2 !   14.7   0.0   1.6e-05     0.029      40      71 ..     196     227 ..     191     238 .. 0.88
   3 !   19.8   0.0   4.2e-07   0.00074      37      89 ..     247     298 ..     241     300 .. 0.90
   4 !   11.6   0.0   0.00015      0.27      38      77 ..     290     329 ..     287     335 .. 0.88
   5 !   11.6   0.0   0.00014      0.26      37      82 ..     332     377 ..     328     382 .. 0.89
   6 ?    4.7   0.0     0.021        38      52      81 ..     393     422 ..     388     431 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4e-07
  ANAPC4_WD40  22 fRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  fR n + v  l  +++ + v++++ +p+gk+ a a +dg+v+l da +g+ + +l
   CCE31101.1 138 FRPNYKPVLAL--HGHTGPVSQVRISPNGKFVASASADGSVKLWDAVTGTHIDTL 190
                  68888889888..8999********************************999877 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.6e-05
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgk 71 
                   v++LaW pd ++La + +d ++rl d  +g+
   CCE31101.1 196 GVSCLAWTPDSNMLASGSDDKAIRLWDRVTGR 227
                  699***********************999886 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 4.2e-07
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  + + +++La++p+g++La +  d +v l d+  g++++sl+++s+  v+ +++
   CCE31101.1 247 HHNYIHCLAFSPKGNVLASGSYDEAVFLWDVRAGRLMRSLPAHSDP-VSGIDF 298
                  567899*************************************995.887766 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 0.00015
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                  +  v+++ +  dg+l a    dg +r+ da++g+++++l 
   CCE31101.1 290 SDPVSGIDFCRDGTLVASCSTDGLIRVWDASTGQCLRTLV 329
                  678999*****************************99875 PP

  == domain 5  score: 11.6 bits;  conditional E-value: 0.00014
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                  ++  v++++++p+g++      d+ +rl d  +g+v ++++ ++++
   CCE31101.1 332 DNPAVTNVCFSPNGRFVLAFNLDNCIRLWDYVTGTVKKTYQGHRNE 377
                  56689*******************************9999887765 PP

  == domain 6  score: 4.7 bits;  conditional E-value: 0.021
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvkse 81 
                  + a a +dg + l d+ ++ v++ +++++ 
   CCE31101.1 393 FVASASEDGDIVLWDVRNKVVLQRVQTGHR 422
                  78999******************9999876 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0016       2.8     226     255 ..     158     189 ..     154     195 .. 0.85
   2 ?    2.2   0.0     0.031        56     228     252 ..     202     228 ..     191     235 .. 0.82
   3 !   10.4   0.0    0.0001      0.18     227     255 ..     300     327 ..     284     332 .. 0.88
   4 !    4.8   0.0    0.0049       8.8     226     255 ..     337     370 ..     331     382 .. 0.79
   5 ?    1.9   0.0     0.039        70     223     254 ..     385     415 ..     369     421 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0016
                 .....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 226 vei..gqtylfalsrdgkLrvWnlltgkclat 255
                 v+i  + ++++++s dg +++W+  tg+++ t
  CCE31101.1 158 VRIspNGKFVASASADGSVKLWDAVTGTHIDT 189
                 55566789*******************99876 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.031
                 ...TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 228 i..gqtylfalsrdgkLrvWnlltgkc 252
                    ++++l++ s d+ +r+W+  tg++
  CCE31101.1 202 WtpDSNMLASGSDDKAIRLWDRVTGRP 228
                 23499****************999876 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.0001
                 ..TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 227 eigqtylfalsrdgkLrvWnlltgkclat 255
                 + + t++++ s dg +rvW+ +tg+cl+t
  CCE31101.1 300 R-DGTLVASCSTDGLIRVWDASTGQCLRT 327
                 4.77999********************98 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0049
                 .......TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 226 vei....gqtylfalsrdgkLrvWnlltgkclat 255
                 +++    +  +++a+ +d+ +r+W++ tg++  t
  CCE31101.1 337 TNVcfspNGRFVLAFNLDNCIRLWDYVTGTVKKT 370
                 44444457789*****************987555 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.039
                 T.....TTTEEEEEETT-EEEEEETTTTEEEE CS
      Nup160 223 vavveigqtylfalsrdgkLrvWnlltgkcla 254
                 ++v + g+ +++++s dg + +W+++++ +l 
  CCE31101.1 385 FGVLD-GEPFVASASEDGDIVLWDVRNKVVLQ 415
                 67777.999******************98775 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00014      0.25     181     215 ..     145     180 ..     138     189 .. 0.85
   2 ?   -1.3   0.0      0.48   8.5e+02     188     215 ..     195     222 ..     187     230 .. 0.86
   3 !    5.7   0.0    0.0033         6     179     216 ..     239     277 ..     226     282 .. 0.81
   4 !    7.7   0.0   0.00082       1.5     189     215 ..     292     318 ..     282     335 .. 0.82
   5 ?   -1.1   0.0      0.39     7e+02     185     215 ..     331     361 ..     320     371 .. 0.82
   6 ?   -1.9   0.0      0.71   1.3e+03     202     217 ..     394     409 ..     388     448 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
    Ge1_WD40 181 llkieehs.liveaafspdGtalatasedGevkffq 215
                 +l ++ h+  +++  +sp+G  +a as+dG vk++ 
  CCE31101.1 145 VLALHGHTgPVSQVRISPNGKFVASASADGSVKLWD 180
                 56677777689999*******************997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.48
    Ge1_WD40 188 sliveaafspdGtalatasedGevkffq 215
                 + +++ a++pd   la  s d  ++++ 
  CCE31101.1 195 AGVSCLAWTPDSNMLASGSDDKAIRLWD 222
                 567888999***************9985 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0033
    Ge1_WD40 179 egllkieehs.liveaafspdGtalatasedGevkffqv 216
                 +g+  ++ h   i + afsp G +la  s d  v ++ v
  CCE31101.1 239 HGTAALRGHHnYIHCLAFSPKGNVLASGSYDEAVFLWDV 277
                 566666666449********************9999887 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.00082
    Ge1_WD40 189 liveaafspdGtalatasedGevkffq 215
                  ++   f  dGt +a +s+dG+++ + 
  CCE31101.1 292 PVSGIDFCRDGTLVASCSTDGLIRVWD 318
                 466677999***************996 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.39
    Ge1_WD40 185 eehsliveaafspdGtalatasedGevkffq 215
                 e+++ +++  fsp+G  + +   d  ++++ 
  CCE31101.1 331 EDNPAVTNVCFSPNGRFVLAFNLDNCIRLWD 361
                 4556999********9999999999999996 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 0.71
    Ge1_WD40 202 latasedGevkffqvy 217
                 +a asedG + ++ v 
  CCE31101.1 394 VASASEDGDIVLWDVR 409
                 5666666666666553 PP

>> VID27  VID27 C-terminal WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.52   9.3e+02     160     177 ..     166     183 ..     154     199 .. 0.73
   2 ?    2.6   0.0     0.032        58     155     183 ..     203     231 ..     189     238 .. 0.85
   3 !    6.1   0.0    0.0027       4.8     161     210 ..     263     311 ..     246     323 .. 0.76
   4 !    5.1   0.0    0.0055       9.8     160     207 ..     304     352 ..     290     376 .. 0.77
   5 ?   -1.3   0.0      0.48   8.7e+02     160     175 ..     393     408 ..     388     414 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.52
       VID27 160 yiavasekGdirlfdrlg 177
                 ++a as  G ++l+d + 
  CCE31101.1 166 FVASASADGSVKLWDAVT 183
                 578899999999999863 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.032
       VID27 155 ttekGyiavasekGdirlfdrlginakta 183
                 t ++ ++a +s+   irl+dr+  + kt+
  CCE31101.1 203 TPDSNMLASGSDDKAIRLWDRVTGRPKTT 231
                 5578899****************999996 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0027
       VID27 161 iavasekGdirlfdrlginaktalPalgdpiigldvsadGrwvlatckty 210
                 +a +s    + l+d    +   +lPa +dp+ g+d   dG  v a c+t 
  CCE31101.1 263 LASGSYDEAVFLWDVRAGRLMRSLPAHSDPVSGIDFCRDGTLV-ASCSTD 311
                 56677777788899888889999*****************965.666654 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.0055
       VID27 160 yiavasekGdirlfdr.lginaktalPalgdpiigldvsadGrwvlatc 207
                  +a +s  G ir++d   g+  +t +     ++++++ s +Gr+vla  
  CCE31101.1 304 LVASCSTDGLIRVWDAsTGQCLRTLVHEDNPAVTNVCFSPNGRFVLAFN 352
                 4788999********62678889999999999**************964 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.48
       VID27 160 yiavasekGdirlfdr 175
                 ++a ase Gdi l+d 
  CCE31101.1 393 FVASASEDGDIVLWDV 408
                 6899*********995 PP

>> DUF5046  Domain of unknown function (DUF5046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.031        55      18      83 ..     162     230 ..     150     254 .. 0.69
   2 ?    6.8   0.0    0.0023       4.1      82     116 ..     291     327 ..     252     416 .. 0.76
   3 ?    1.2   0.0      0.11     2e+02      58     108 ..     401     449 ..     395     455 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.031
     DUF5046  18 gvGvasl.rtedgryelidlastedsellatfdrsv..styaPGavvlwnsgedsryelidletGektp 83 
                 ++G      + dg  +l d  ++ + + l     +v  + ++P   +l    +d+  +l+d  tG  ++
  CCE31101.1 162 PNGKFVAsASADGSVKLWDAVTGTHIDTLVGHMAGVscLAWTPDSNMLASGSDDKAIRLWDRVTGRPKT 230
                 555433303479999999988877777665555444116789999999999999999999999997544 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0023
     DUF5046  82 tpvydvda.rdkt.vavyatdgilrvydkttGalltd 116
                  pv  +d  rd+t va  +tdg +rv+d +tG+ l  
  CCE31101.1 291 DPVSGIDFcRDGTlVASCSTDGLIRVWDASTGQCLRT 327
                 466666643565537999**************98854 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.11
     DUF5046  58 GavvlwnsgedsryelidletGektpvydvdardktvavyatdgilrvydk 108
                 G +vlw+  +     l  ++tG +   + vd + +t+a    d  +r+y +
  CCE31101.1 401 GDIVLWDVRNK--VVLQRVQTGHRGVCFWVDVNGETMASAGQDHCVRLYRH 449
                 67778877664..4677899****************************975 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.023        41     258     289 ..     193     224 ..     155     234 .. 0.67
   2 ?    6.1   0.0    0.0016       2.9     262     341 ..     251     332 ..     247     357 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.023
        Frtz 258 lraqvislafnpdedkLllGceDssviLydee 289
                   a v +la  pd + L  G+ D+++ L+d +
  CCE31101.1 193 HMAGVSCLAWTPDSNMLASGSDDKAIRLWDRV 224
                 34566666777777777777777777777665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0016
        Frtz 262 vislafnpdedkLllGceDssviLydeerk.itklvkaevvP.sliswhpdsaillvasergelqifDlaLspiriqllsed 341
                 + +laf+p+ + L  G+ D++v L+d   + + +   a+  P s i +  d++++  +s  g ++++D +       l+ ed
  CCE31101.1 251 IHCLAFSPKGNVLASGSYDEAVFLWDVRAGrLMRSLPAHSDPvSGIDFCRDGTLVASCSTDGLIRVWDASTGQCLRTLVHED 332
                 7799**********************8765233444566666356999999*****************99888888888877 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00062       1.1       3      76 ..     251     325 ..     249     347 .. 0.83
   2 ?    0.1   0.0      0.23   4.1e+02     249     295 ..     393     440 ..     381     443 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00062
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillslleneeev 76 
                 i  + +s+kg++++ G+ d+ + + +++ + ++ ++   +d v  + +  d  l+  ++ DG i   + + ++  
  CCE31101.1 251 IHCLAFSPKGNVLASGSYDEAVFLWDVRAGRLMRSLPAHSDPVSGIDFCRDGtLVASCSTDGLIRVWDASTGQCL 325
                 566789******************************************9988466679******88777777744 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.23
   WD40_like 249 vvafsTlcgkvgigDiRdketfk.llesgvGviydmkfenntiyvgGe 295
                 +va +  +g + + D+R+k  ++ ++ ++ Gv + + ++ +t++  G+
  CCE31101.1 393 FVASASEDGDIVLWDVRNKVVLQrVQTGHRGVCFWVDVNGETMASAGQ 440
                 567777888999999999988852566678888888888888887775 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.11     2e+02     293     347 ..     165     218 ..     149     222 .. 0.75
   2 ?   -1.3   0.0      0.44   7.9e+02     194     216 ..     264     286 ..     254     299 .. 0.72
   3 ?    5.8   0.1     0.003       5.4     294     340 ..     304     350 ..     299     361 .. 0.71
   4 ?   -2.0   0.0      0.72   1.3e+03     196     220 ..     397     421 ..     388     426 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.11
  PALB2_WD40 293 qlaaavltsGaiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsv 347
                 + +a+  + G++ +Wd + g+    l+ +     s + W+  + +l +G  d  +
  CCE31101.1 165 KFVASASADGSVKLWDAVTGTHIDTLVGHMAG-VSCLAWTPDSNMLASGSDDKAI 218
                 567888889********999888888776654.5777898776666667766655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.44
  PALB2_WD40 194 lgttvlnniviWnlktGqllkki 216
                  + + ++ + +W++++G+l++++
  CCE31101.1 264 ASGSYDEAVFLWDVRAGRLMRSL 286
                 34455667778888888888765 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.003
  PALB2_WD40 294 laaavltsGaiavWdlllghctalllpesdesWslvrWsgtdsqlla 340
                 l+a+  t G i vWd   g+c   l+ e +   + v +s     +la
  CCE31101.1 304 LVASCSTDGLIRVWDASTGQCLRTLVHEDNPAVTNVCFSPNGRFVLA 350
                 56777788888888888888888887777777777766666666666 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.72
  PALB2_WD40 196 ttvlnniviWnlktGqllkkieige 220
                 ++ + +iv+W+++   +l++++ g+
  CCE31101.1 397 ASEDGDIVLWDVRNKVVLQRVQTGH 421
                 4556789999999988888888775 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  11.5    0.0021       3.7      51     158 ..      12     118 ..       2     242 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0021
         SPX  51 nrpedskkksse...rtepstsaaadesgnsaadasssepkdeae............slprrsplsrssrssssygglvssppsansssssddssesnp 134
                 +r++ +k+++ +   +++p+ sa+++++ +++ d ++s+ +++a+            +   + + s ss+ sss g   +sp+s+ +   + ++++++ 
  CCE31101.1  12 SRNKRRKTHDDSslpSSPPGASAHEPSD-AAQPDYDASSRRPSAAlltekyplrsqsR---QASRSPSSCASSSRG---ASPSSRAARPRTRRRHSDS- 102
                 3344444444444533334444333333.33333333333333335777666642221...222222222222222...2222222222222222222. PP

         SPX 135 adssssssssesesssssspsllr 158
                     s+ss+++++s++s+     +
  CCE31101.1 103 ----STSSQGSQGSQGSR----SE 118
                 ....11111111111111....11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 3640.29
//
Query:       CCE31102.1  [L=199]
Description: uncharacterized protein CPUR_04953 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1540.15
//
Query:       CCE31103.1  [L=14]
Description: uncharacterized protein CPUR_04954 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (14 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        33  (0.00184059); expected 358.6 (0.02)
Passed bias filter:                       24  (0.00133861); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 123.77
//
Query:       CCE31104.1  [L=454]
Description: related to aspartic proteinase OPSB [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-69  235.1   0.3    1.7e-69  234.7   0.3    1.2  1  Asp             Eukaryotic aspartyl protease
      5e-14   52.9   1.9    4.3e-12   46.6   2.8    2.8  2  TAXi_N          Xylanase inhibitor N-terminal
    6.1e-05   23.6   0.1        2.1    9.1   0.0    3.6  2  Asp_protease_2  Aspartyl protease
  ------ inclusion threshold ------
      0.016   15.0   0.0      0.059   13.1   0.0    1.9  1  TAXi_C          Xylanase inhibitor C-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.7   0.3   3.8e-73   1.7e-69       2     314 ..      48     376 ..      47     377 .. 0.91

  Alignments for each domain:
  == domain 1  score: 234.7 bits;  conditional E-value: 3.8e-73
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTT...ESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpssk...ckkssackshstydpskSstykkngkslsisYGdg.svsGflsqdtvkvggltvknqefgeatke 96 
                 Y+ + s+Gtp+q+ ++ +DTGSsdlWV   k   c++++ c+ ++ty +++Ssty+   ++++isY dg  ++G +++d   ++g tv +++fg   k 
  CCE31104.1  48 YYLNASLGTPPQNVRLHLDTGSSDLWVNTPKsslCSQKQRCSDSETYSANSSSTYHYIASNFNISYVDGsGSTGDYATDVLRFAGQTVSDLQFGIGYKS 146
                 89999**********************8766666999999*****************************99************************9999 PP

                 SSHHHTTSSSSEEEE-S-GGGSCGG...SCCHHHH....HHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS..TSS..TEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx..xxxxxx RF
         Asp  97 pgstflaakfdGiLGlgfkeisvee...atpvfdn....lvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts..kgy..wqiele 184
                 ++        + +LG+g+++++v+     ++++ n    l +qgl +++ +s++ln  e++ g+i+fGgvD+s++kG+l+ vp+++  ++y  ++++++
  CCE31104.1 147 SS-------PQNVLGIGYPANEVQVlldGENTYPNlpakLRAQGLTSSNSYSLWLNDIESNKGNILFGGVDTSRFKGHLVGVPIQKigDTYrqFTVTMT 238
                 99.......588***********98877777788888899**********************************************9955545999*** PP

                 EEEETTEEEEEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEE..........ESSSTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxx RF
         Asp 185 svtvggktvlcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisftiggakitvpvselvlk..........eeesee 273
                 ++ vg+++v+++    ++lDtG sl++lp+si+++i + ++a + e eg  ++ C++ + + ++ f+ + a itvp+sel+++          ++++++
  CCE31104.1 239 GLDVGSEAVASNAALGVLLDTGSSLTYLPDSIAAEIYRLVNAVYLEAEGAAIIPCSQENMNMTFRFS-SPAAITVPLSELIFSledptaksgsSKDGGN 336
                 ********************************************************97777777777.899*********9752222222221345567 PP

                 SEEEESEEECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 274 sqCilglvseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                 ++Ci+g+ ++ + ++ iLGd+Flrsayvv+d+dnn++ lA+
  CCE31104.1 337 ESCIFGI-MPAGDSVPILGDTFLRSAYVVYDMDNNEIALAN 376
                 89*****.9999***************************97 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   2.8   9.6e-16   4.3e-12       1     178 []      48     208 ..      48     208 .. 0.84
   2 ?    2.1   0.0     0.043   1.9e+02      14      35 ..     253     293 ..     237     356 .. 0.64

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 9.6e-16
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgssssGvlatd 99 
                 Y+ + s+Gtppq++ l +DtGs+ +Wv+                p++s  +++ +cs+s+      s +++s+ +  + +++isy  dgs s+G++atd
  CCE31104.1  48 YYLNASLGTPPQNVRLHLDTGSSDLWVNT---------------PKSSLCSQKQRCSDSETY----SANSSSTYHYIASNFNISYV-DGSGSTGDYATD 126
                 999**************************...............888999999999999998....55566666777889999**6.************ PP

      TAXi_N 100 tltlsstdgksvkvpnlvfGCgksnlgglaagadGilGLGrgk.............lSlvsqlaskg.slgnkFsyCLssssssssgvlffGd 178
                 +l++      +++v++l fG g++  +++++    +lG G+ +               l+++l ++g + +n  s+ L ++ +s++g+++fG+
  CCE31104.1 127 VLRF-----AGQTVSDLQFGIGYK--SSSPQ---NVLGIGYPAnevqvlldgentyPNLPAKLRAQGlTSSNSYSLWL-NDIESNKGNILFGG 208
                 ****.....789***********3..33333...47777876667777777778889999***999877778888888.99999999999996 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.043
      TAXi_N  14 lklvvDtGsdltWvqCkpcka...................c 35 
                 l +++DtGs+lt++  +   +                   c
  CCE31104.1 253 LGVLLDTGSSLTYLPDSIAAEiyrlvnavyleaegaaiipC 293
                 44899*******98764444455555555555555555554 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00059       2.7       9      88 ..      60     155 ..      52     157 .. 0.76
   2 !    9.1   0.0   0.00046       2.1       9      31 ..     252     274 ..     244     287 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00059
  Asp_protease_2   9 pvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrlds..................lklggltlknvpalvldlgeeidgl 85 
                      vr++lDTG+s + +++     +  k+r s+      +a+ +++ +++  +                   l+++g t+ ++++ +  + ++++ +
      CCE31104.1  60 NVRLHLDTGSSDLWVNTPKSSLCSQKQRCSD--SETYSANSSSTYHYIASNFnisyvdgsgstgdyatdvLRFAGQTVSDLQFGIGYKSSSPQNV 152
                     6889999999999999998888888888875..55556666666555555535667777777777777779999999999999999988999999 PP

  Asp_protease_2  86 LGm 88 
                     LG+
      CCE31104.1 153 LGI 155
                     986 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00046
  Asp_protease_2   9 pvrfllDTGasttlispelaekl 31 
                      + +llDTG+s t+++++ a+++
      CCE31104.1 252 ALGVLLDTGSSLTYLPDSIAAEI 274
                     6779**************99987 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.3e-05     0.059       4     157 ..     235     372 ..     232     376 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
                 EEEEEEEETTEEE-------EE-S----SEEE-SSSSSEEE-HHHHHHHHHHHHHTS-GG......GE---TT-S-EEETTS......-S----EEEEE CS
      TAXi_C   4 ipvkgisvngkrlplpasaldldktgsggtvlstgtpytvletdvYralvkafakelaaek...vkrvaavkpfelCynsselgstragpavPtitlvl 99 
                 ++ +g+ v+ ++++ +a         + g++l+tg+++t+l++++ +++ + +++   + +   +    ++++ ++ ++ s+   +++++ + ++ + l
  CCE31104.1 235 VTMTGLDVGSEAVASNA---------ALGVLLDTGSSLTYLPDSIAAEIYRLVNAVYLEAEgaaII-PCSQENMNMTFRFSSP--AAITVPLSELIFSL 321
                 55555555555555555.........55*************9987555444444333222222232.4677777888888882..45555555666666 PP

                 SSS-EEEE-GGGGEEE-SSSEEEE.-EEE--S--SSSEEE-HHHHBTS-EEEETTTTEE CS
      TAXi_C 100 eggaewtisgenllvkveggvvCl.afvesgvagesavviGglqlednllvFDleksrl 157
                 e+      ++++   k  g+  C+ +++     g+s  ++G   l+  ++v+D++++++
  CCE31104.1 322 ED-----PTAKSGSSKDGGNESCIfGIMPA---GDSVPILGDTFLRSAYVVYDMDNNEI 372
                 63.....33333334455778896255555...9999*****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3825.33
//
Query:       CCE31105.1  [L=911]
Description: related to Zn(II)2Cys6 transcriptional activator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-11   43.6   0.0    3.2e-11   42.8   0.0    1.3  1  Fungal_trans  Fungal specific transcription factor domain
    4.9e-10   39.4   8.9    8.8e-10   38.6   8.9    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   3.6e-15   3.2e-11       3     196 ..     233     431 ..     232     473 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 3.6e-15
  Fungal_trans   3 rffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltses.....qefiafplraeilihedfsspssslwil 94 
                    ff + h  +p++h   f+ ++     ++ +  +  l +ai a++a+  ++ +++ +   ++ +     +e+ a++  a++l++ d    +  +++ 
    CCE31105.1 233 AFFLVAHLFIPVVHSGRFYQSF---YGGPLKRPPMSLQYAIWAMAATGHSKYDQYADIFYKRTRqyieaDEMKAGCFHASALSNFDHGEHFITVTHA 326
                   69*****99*************...666666666666677777777666665555544444444568889999999999999988888888889*** PP

  Fungal_trans  95 qsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkks......lwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpL 185
                   q+L +++  e  +   + +  ++  avrl++ +gL r   +    +       +++wee  e+rrR++w++F  D + ++ +G   l++ ++i ++L
    CCE31105.1 327 QALCICAALEAKLMMFTRASTTCAKAVRLCQMMGLDRLDGDQD--DlppclgPPTSWEE-LEERRRVFWGIFAADSHGSISTGWHALINPEDIMTRL 420
                   ***999999999998888999****************999987..345***88888988.************************************* PP

  Fungal_trans 186 Pcddddlwesd 196
                   P +++ + + +
    CCE31105.1 421 PASEEAFASGT 431
                   **999555444 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   8.9   9.8e-14   8.8e-10       2      39 ..      86     122 ..      85     123 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 9.8e-14
                 S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39 
                 aC  Cr++K KCd+ kPaC++C++l+ eC+ y+e +++
  CCE31105.1  86 ACVGCRSRKLKCDRTKPACTRCRTLGGECV-YPEARRK 122
                 9*****************************.**99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 6322.43
//
Query:       CCE31106.1  [L=245]
Description: uncharacterized protein CPUR_04957 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-21   74.8   0.7    7.4e-21   73.8   0.7    1.6  1  Homeobox_KN  Homeobox KN domain
    2.9e-09   36.6   1.9    5.1e-09   35.9   1.9    1.3  1  Homeodomain  Homeodomain


Domain annotation for each model (and alignments):
>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.7   8.2e-25   7.4e-21       1      40 []     139     178 ..     139     178 .. 1.00

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 8.2e-25
  Homeobox_KN   1 WflahlhnPYPseedKeeLlkeTglsvkqitnWFINaRrR 40 
                  Wfl hl++PYP+e++K+ L+++Tgl+++qi+nWFINaRrR
   CCE31106.1 139 WFLTHLEHPYPTEDEKQDLMQQTGLQMNQISNWFINARRR 178
                  ***************************************9 PP

>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   1.9   5.7e-13   5.1e-09       1      55 [.     122     179 ..     122     179 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 5.7e-13
                  ST-SSSS-HHHHHHHHHHHH...HSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Homeodomain   1 rrkRttftkeqleeLeklFe...enrypsaeereeLAkklgLeerqVkvWFqNrRake 55 
                  r++R ++ ke +e L + F    e++yp+++e+++L +++gL+ +q+++WF N R ++
   CCE31106.1 122 RKRRGNLPKETTEKLRAWFLthlEHPYPTEDEKQDLMQQTGLQMNQISNWFINARRRQ 179
                  799****************97767*******************************885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1872.29
//
Query:       CCE31107.1  [L=21]
Description: uncharacterized protein CPUR_04958 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (21 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        74  (0.00412739); expected 358.6 (0.02)
Passed bias filter:                       67  (0.00373696); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 168.95
//
Query:       CCE31108.1  [L=970]
Description: uncharacterized protein CPUR_04959 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-08   32.4   0.3    2.4e-06   27.3   0.0    2.7  2  Homeodomain  Homeodomain
    6.8e-07   29.8   0.0    1.6e-06   28.6   0.0    1.7  1  Rhodanese    Rhodanese-like domain
  ------ inclusion threshold ------
      0.078   12.3   1.5       0.33   10.3   0.9    1.9  2  YPEB         YpeB sporulation


Domain annotation for each model (and alignments):
>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0     4e-10   2.4e-06       7      54 ..     590     637 ..     588     638 .. 0.95
   2 ?    2.1   0.2     0.029   1.7e+02       4      33 ..     849     878 ..     847     882 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 4e-10
                  S-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHH CS
  Homeodomain   7 ftkeqleeLeklFeenrypsaeereeLAkklgLeerqVkvWFqNrRak 54 
                  f+++  ++Le++++++++ps ++   +A++lg+e     vWF+ r+ k
   CCE31108.1 590 FSPHVERRLENYYQNDPTPSDAHSVFIASNLGIELHHLEVWFHHRKEK 637
                  8999999**************************************988 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.029
                  SSSS-HHHHHHHHHHHHHSSS-SHHHHHHH CS
  Homeodomain   4 RttftkeqleeLeklFeenrypsaeereeL 33 
                  R+ + + q + Le++F+  + p ++e  ++
   CCE31108.1 849 RQEYFQMQEKNLEAEFQARHGPLHKEAVDI 878
                  7778889999********999988876665 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   2.7e-10   1.6e-06      15     105 ..     679     783 ..     665     785 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2.7e-10
   Rhodanese  15 a...llDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellel........gidnkktvvvycdgggraaaa......aallkklGykn.vs 95 
                     l+DvR++ eYe++h+ gA+n+    +   ++ ea +l+l+e+++++         ++  k + +y++g +++ +       a+ l++ G++  ++
  CCE31108.1 679 GlslLFDVRSASEYERSHVCGAINL----RAPKSFLEAASLDLIERAIPDeqdrkrfsHWKTAKCLAFYGRGLESSWECpaaeliAQKLRAQGWTGhCF 773
                 34569********************....677777788888888888888787777878888********987774444442233334446999999** PP

   Rhodanese  96 vldGGfkawk 105
                 vl+G ++++ 
  CCE31108.1 774 VLRGHYREFC 783
                 *****99986 PP

>> YPEB  YpeB sporulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.092   5.5e+02      82     105 ..      44      67 ..      39      97 .. 0.75
   2 ?   10.3   0.9   5.5e-05      0.33     124     222 ..     854     953 ..     845     967 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.092
        YPEB  82 tlelsktekFLsqvgdfsyslakk 105
                 t ++s+t+   ++vgdf+++l+ +
  CCE31108.1  44 THDISRTSFHVKHVGDFAQRLEDS 67 
                 568999*************98644 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 5.5e-05
        YPEB 124 yeqakelekeLrkvqekvaegglrwgelekalas.eqekadntiidgnfktvekevekypeliydGpfsdhlekktpkglsgkevseeeakkiakkflg 221
                 + q k+le+e +  +  + ++ + +++ ++a  + +++ +   ++d +++++ ++ ++ p l yd    ++ ++ tp g  gk+ +e+++++   ++ +
  CCE31108.1 854 QMQEKNLEAEFQARHGPLHKEAVDIQKSNQAHDNfDTRAEMVGYLDRGLEKMRSSSQSSPLLSYDPSNIESAQEDTPDGHLGKTLEEQDVEDEYVEISQ 952
                 6688999999999999***********999988789999999**********************9999*********************9988777666 PP

        YPEB 222 k 222
                 +
  CCE31108.1 953 T 953
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (970 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 6453.68
//
Query:       CCE31109.1  [L=505]
Description: related to PBN1 protein, required for post-translational processing of the protease B precursor Prb1p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-66  224.8   0.0    1.6e-66  224.2   0.0    1.3  1  PIG-X     PIG-X / PBN1


Domain annotation for each model (and alignments):
>> PIG-X  PIG-X / PBN1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.2   0.0   9.2e-71   1.6e-66       1     211 []     268     479 ..     268     479 .. 0.91

  Alignments for each domain:
  == domain 1  score: 224.2 bits;  conditional E-value: 9.2e-71
       PIG-X   1 ptGlHptlqltvssaekslkpp..ekeCklllyltlpssvfvDkYqLaeldelf......aelvvvsgevdLEaPeykvkewgsevllelatp.keeke 90 
                 ptGlHp lql+v    +s+k+p  +++C+ ++yltlp+++f+D+YqLa  del       a ++++s +vdLEaP+y++k wgs+vllela+p  ++ +
  CCE31109.1 268 PTGLHPVLQLNV----TSNKAPvaDEHCAPFAYLTLPKTIFADRYQLA--DELLlaannlAASRYTSLPVDLEAPAYTTKVWGSSVLLELAPPaGSDGD 360
                 79**********....333444569***********************..6655679987369******************************545566 PP

       PIG-X  91 eseeewtvtlPlHlRYlapsseesgytevelpsPevfwaCeseaeegeklskspfdrknlgydglfgektvFyhlkpkpesesl..vesievPvgdtsd 187
                 +++  wt+++PlHlRYl ps  ++g +++e+p+P+vfwaCes+a+  + + ++pfdr++ gyd+lf++ tvF+h +p+p s+++  ++ i+vPv+++++
  CCE31109.1 361 DESVAWTAKVPLHLRYLSPS--STGNADIEVPYPAVFWACESAAK--ADFANNPFDRTSVGYDALFSSSTVFWHAEPEPVSGDNrlMSAITVPVLKEEA 455
                 77889**************6..9*****************66666..6********************************999999************* PP

       PIG-X 188 aalVeigTllvvllgflwvlwkll 211
                 aa++++gT++vv+lgf+wvlw+l+
  CCE31109.1 456 AAWISVGTTVVVVLGFAWVLWTLF 479
                 *********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3870.74
//
Query:       CCE31110.1  [L=926]
Description: probable heat shock protein HSP104 (endopeptidase Clp ATP-binding chain HSP104) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-46  158.1   0.0      6e-45  153.4   0.0    2.8  2  AAA_2            AAA domain (Cdc48 subfamily)
    8.2e-33  112.4  11.2      1e-31  108.9   3.0    3.5  3  AAA_lid_9        AAA lid domain
    3.8e-26   92.1   0.0    1.5e-13   51.3   0.0    2.9  2  AAA              ATPase family associated with various cellul
    7.1e-24   83.7   0.9    7.1e-24   83.7   0.9    3.0  2  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    6.6e-16   58.6   0.0      5e-10   39.5   0.0    3.1  2  AAA_5            AAA domain (dynein-related subfamily)
    1.7e-12   47.8   0.0    6.1e-05   23.3   0.0    4.1  2  AAA_22           AAA domain
    7.8e-12   45.9  12.5    3.4e-06   27.6   3.5    5.3  4  AAA_16           AAA ATPase domain
      4e-09   36.4   0.0    7.1e-06   25.8   0.0    2.6  2  Sigma54_activat  Sigma-54 interaction domain
    1.5e-06   28.2   0.0      0.085   12.9   0.0    2.9  2  AAA_14           AAA domain
    3.4e-06   26.7   0.0      0.019   14.5   0.0    2.6  2  AAA_7            P-loop containing dynein motor region
    4.8e-06   26.4   0.0      0.091   12.5   0.0    2.8  2  IstB_IS21        IstB-like ATP binding protein
    5.2e-06   26.7   0.1       0.26   11.4   0.0    3.4  2  AAA_33           AAA domain
    6.2e-06   26.3   5.3     0.0064   16.6   0.1    4.1  3  Clp_N            Clp amino terminal domain, pathogenicity isl
    1.4e-05   24.6   0.2       0.26   10.6   0.2    3.5  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    4.9e-05   23.6   0.0       0.45   10.7   0.0    3.2  2  AAA_28           AAA domain
    5.9e-05   23.4   0.0       0.57   10.6   0.0    2.6  2  RNA_helicase     RNA helicase
     0.0002   21.1   0.0        1.1    8.9   0.0    2.9  2  AAA_30           AAA domain
    0.00022   21.1   0.1       0.97    9.3   0.0    3.7  4  AAA_3            ATPase family associated with various cellul
    0.00023   21.1   0.0       0.36   10.8   0.0    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00024   21.6   7.7       0.13   12.8   0.0    4.6  3  AAA_18           AAA domain
    0.00025   20.8   1.6        2.6    7.8   0.7    4.3  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0004   20.4   8.3       0.03   14.2   0.2    4.4  3  ATPase_2         ATPase domain predominantly from Archaea
    0.00041   20.3   0.0       0.34   10.8   0.0    2.9  2  RsgA_GTPase      RsgA GTPase
    0.00049   20.4   1.3       0.17   12.2   0.0    3.7  2  AAA_19           AAA domain
    0.00053   19.8   0.0       0.52   10.0   0.0    2.7  2  AAA_24           AAA domain
    0.00069   18.8   0.1      0.016   14.3   0.0    2.8  2  T2SSE            Type II/IV secretion system protein
    0.00089   19.8   0.0        1.3    9.6   0.0    3.3  2  ABC_tran         ABC transporter
      0.002   18.1   0.0       0.21   11.5   0.0    2.9  2  NACHT            NACHT domain
     0.0043   16.8   0.0        4.6    7.1   0.0    2.7  2  AAA_29           P-loop containing region of AAA domain
     0.0069   16.4   0.0        1.2    9.1   0.0    3.4  3  ResIII           Type III restriction enzyme, res subunit
     0.0071   16.6   0.0        2.1    8.6   0.0    2.6  2  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0076   16.3   0.3         10    6.2   0.5    4.0  2  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
     0.0084   16.0   0.0          7    6.5   0.0    2.8  2  Rad17            Rad17 P-loop domain
     0.0097   15.2   0.0        1.2    8.3   0.0    2.8  2  Zeta_toxin       Zeta toxin
       0.01   15.8   0.0       0.23   11.4   0.0    2.8  2  NTPase_1         NTPase
  ------ inclusion threshold ------
      0.011   15.3   5.9       0.93    9.0   0.0    4.0  4  AAA_25           AAA domain
      0.013   15.6   0.0      0.052   13.6   0.0    1.9  1  Torsin           Torsin
      0.025   15.1  12.7       0.41   11.1   0.0    4.2  2  AAA_23           AAA domain
      0.031   13.4   0.1        2.5    7.2   0.0    3.1  2  DUF815           Protein of unknown function (DUF815)
      0.034   13.8   0.0        5.1    6.7   0.0    2.6  2  SRP54            SRP54-type protein, GTPase domain
      0.072   12.9   0.0        6.4    6.5   0.0    2.6  2  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.092   12.4   0.1         38    3.8   0.2    3.3  3  AAA_15           AAA ATPase domain
      0.093   11.7   0.0        8.3    5.3   0.0    3.0  3  AAA_6            Hydrolytic ATP binding site of dynein motor 
       0.12   12.1   0.0        7.6    6.3   0.0    2.6  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.94    9.5   9.9       0.27   11.2   0.5    2.8  2  Nop16            Ribosome biogenesis protein Nop16
          1    9.5   8.8        4.2    7.5   8.8    2.2  1  Cep57_CLD_2      Centrosome localisation domain of PPC89
        6.6    7.3  11.1         22    5.6   7.3    3.3  2  ZapB             Cell division protein ZapB


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.82   3.1e+02       7      45 ..     221     265 ..     215     328 .. 0.59
   2 !  153.4   0.0   1.6e-47     6e-45       5     170 ..     630     791 ..     626     792 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.82
                 EEE--TTSSHHHHHHHHHHHTT-..........-EEEEEGGG--- CS
       AAA_2   7 lllgptgvGktelakalaellfv......kkekkliradaselle 45 
                  l+g+ gvGkt + + la+ +         k+ kl  +d  +l  
  CCE31110.1 221 VLIGEPGVGKTTVVEGLAQRIVNrdvpdnLKQCKLLSLDVGALVA 265
                 678999999999999998876434444443444444444444444 PP

  == domain 2  score: 153.4 bits;  conditional E-value: 1.6e-47
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG------------ CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessgadvS 91 
                 s+l++gp+g+Gkt+l+kalae+lf ++ k++ir+d+se++e    +h +sr igappgyvg++ gG            i+l+DE++K+++         
  CCE31110.1 630 SFLFCGPSGTGKTLLTKALAEFLF-DDPKAMIRFDMSEYQE----RHALSRMIGAPPGYVGHDAGGqltealrrkpfsILLFDEVEKAAK--------- 714
                 89**********************.****************....*********************************************......... PP

                 -HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--E CS
       AAA_2  92 regVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpe 170
                   +V+++LLq++++g++td qgr vd kn++++mt+++g++  ++   ++ + +  ++e v+++l++++ pE+l+R++ 
  CCE31110.1 715 --EVLTVLLQLMDDGRITDGQGRVVDAKNCIVVMTSNLGAEYLIRPGSKEGRIDAPTRELVMSALRNYFLPEFLNRINS 791
                 ..*******************************************9999999*************************86 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.018       6.9      26      72 ..      12      59 ..       8      87 .. 0.77
   2 !  108.9   3.0   2.7e-34     1e-31       2     103 ..     362     463 ..     361     464 .. 0.97
   3 ?   -0.7   0.5       3.5   1.3e+03      66     100 ..     486     520 ..     470     523 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.018
   AAA_lid_9 26 dealeaavklSkrYisdrflPdk.AIDllDeaaarvrlkkeskpeele 72
                ++a+e a++l+++Y +++ lP   A++llD    r + +++  ++  +
  CCE31110.1 12 QKAVEDAMSLAEQYGHSQLLPVHlAVSLLDPPVDRSKDQQNGPQNTTS 59
                789******************644******887777766665554444 PP

  == domain 2  score: 108.9 bits;  conditional E-value: 2.7e-34
   AAA_lid_9   2 eeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeeekekaerl 100
                 + eti+iLrglke+y +hH+v+i d+al+aa++l++rY+++r++Pd+AIDl+Deaaa+vr+++es+pe +++le++l++l  e +aleke++++++ rl
  CCE31110.1 362 IPETISILRGLKERYDRHHRVTILDSALVAAANLAARYLTSRRMPDSAIDLVDEAAAAVRVARESQPEIIDSLERKLRQLLIEIAALEKEHDEASQIRL 460
                 679******************************************************************************************999999 PP

   AAA_lid_9 101 kel 103
                 +++
  CCE31110.1 461 RQA 463
                 875 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 3.5
   AAA_lid_9  66 skpeeleklekelaklekekealekeeekekaerl 100
                 ++ e+++ ++ +l++lek+ e +++ ++++ka++l
  CCE31110.1 486 KRSEQIHLAKVKLDELEKRLEDAINMNNTAKAADL 520
                 44566777888889999998888888888877766 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0     4e-16   1.5e-13       2     112 ..     221     338 ..     220     359 .. 0.79
   2 !   37.5   0.0   7.4e-12   2.8e-09       2     117 ..     632     757 ..     631     769 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 4e-16
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 +l+G pG+GKT++++ +a+ +          + ++l++++  l+  sk+ ge e+++++++ke++ +++  +lf+DEi+ l+++   s+ e +++++n 
  CCE31110.1 221 VLIGEPGVGKTTVVEGLAQRIvnrdvpdnlkQCKLLSLDVGALVagSKFRGEFEERMKGVLKEVEDSKEMIVLFVDEIHLLMGAG--SSGEGGMDAANL 317
                 599*****************76666666555588********999899****************999867**************9..667777788887 PP

                 HHHHHHHTTTSSSTEEEEEEESS..G CS
         AAA  89 Llteldgvkkkeskvivigatnr..p 112
                 L ++l + +       +igat+   +
  CCE31110.1 318 LKPMLARGQL-----HCIGATTLaeY 338
                 7777777766.....68999987442 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 7.4e-12
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHHH.HHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesek.kirelfkeakekakp.silfiDEidalaksrsgseseeee 83 
                 l++Gp GtGKTll ka+a+ l      ++++++se  +             yvg+ +  ++ e +++   k  p sil++DE+++ ak+          
  CCE31110.1 632 LFCGPSGTGKTLLTKALAEFLfddPKAMIRFDMSEYQERhalsrmigappgYVGHDAGgQLTEALRR---K--PfSILLFDEVEKAAKEV--------- 716
                 89******************96543678999999988667899999999998887665144555533...3..77***********8888......... PP

                 HHHHHHHHHHHHTTTS........SSTEEEEEEESS.GGGSTH CS
         AAA  84 rvvnqLlteldgvkkk........eskvivigatnr.pdkldp 117
                   + +Ll+ +d+ +           +++iv++++n   + l +
  CCE31110.1 717 --LTVLLQLMDDGRITdgqgrvvdAKNCIVVMTSNLgAEYLIR 757
                 ..************999******9777*******986555544 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.3       2.5   9.5e+02       6      34 ..     490     517 ..     485     521 .. 0.72
   2 !   83.7   0.9   1.9e-26   7.1e-24       1      81 []     798     880 ..     798     880 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 2.5
                    HHHHHHHHHHHHHHHSCTTTEEEEEHHHH CS
  ClpB_D2-small   6 lkkIvdlalkklekrlkergvelevtdea 34 
                      + ++ +l++lekrl+ + ++++ t +a
     CCE31110.1 490 QIHLAKVKLDELEKRLE-DAINMNNTAKA 517
                    56677889********7.66666666665 PP

  == domain 2  score: 83.7 bits;  conditional E-value: 1.9e-26
                    SCHHHHHHHHHHHHHHHHHHSCT..TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEEE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlke..rgvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvrv 81 
                    Lt++e++kIvd+++ +++krl++  r+v+++++dea+d+l ++gy+p+yGARpL r+i++e++++la +il++++++g+ +rv
     CCE31110.1 798 LTRKEIRKIVDIRIGEIQKRLEDngRKVKIDISDEAKDYLGNAGYSPAYGARPLSRLIEKEVLNRLAILILRNNIQDGEIARV 880
                    89*******************987899**************************************************998876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     3e-05     0.011       3      26 ..     221     245 ..     219     299 .. 0.89
   2 !   39.5   0.0   1.3e-12     5e-10       2     122 ..     631     750 ..     630     770 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3e-05
                 EEE--SSSSHHHHHHHGGGGB.S-- CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nre 26 
                 +L+G+pG+gK++++e la+++ nr 
  CCE31110.1 221 VLIGEPGVGKTTVVEGLAQRIvNRD 245
                 79******************98654 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 1.3e-12
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--.TT--HHHHH--B--...........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqlt.rdtteedlkgrreikngttslvd..splvraar..egeilvlDEveraesevlnsLlslleerrl 94 
                 +l  Gp+GtgK+ l++ la++l  ++  ++ +  + ++e++ + r+  ++ +++ +d  + l++a r    +il++DEve+a +evl +Ll+l+++ r+
  CCE31110.1 631 FLFCGPSGTGKTLLTKALAEFLfDDPKAMIRFDmSEYQERHALSRMIGAPPGYVGHDagGQLTEALRrkPFSILLFDEVEKAAKEVLTVLLQLMDDGRI 729
                 6889*******************88888887752334455555555545444444443389*****9655689************************** PP

                 E..-SSSEEE---......-EEEEEESS CS
       AAA_5  95 lleeggelvkaknddllerfrviatanp 122
                    +g+++v  +++       v++t+n 
  CCE31110.1 730 T--DGQGRVVDAKN-----CIVVMTSNL 750
                 *..88888877776.....888888885 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   7.7e-06    0.0029       4     102 ..     216     300 ..     213     338 .. 0.63
   2 !   23.3   0.0   1.6e-07   6.1e-05       8     118 ..     631     726 ..     626     744 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 7.7e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaq 101
                 t++  v++Ge+G+GKTt+++ l+++ +++  +++ ++ ++++ ++ ++   ++++ e+ + ++  lk+   +s             + +  +l +DE++
  CCE31110.1 216 TKNNPVLIGEPGVGKTTVVEGLAQRIVNRDVPDNlKQCKLLSLDVGALVAGSKFRGEFEERMKGVLKE-VEDS-------------KEM-IVLFVDEIH 299
                 778889******************99876555555555555555555555555555555554444444.3333.............333.455555555 PP

      AAA_22 102 h 102
                  
  CCE31110.1 300 L 300
                 5 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 1.6e-07
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv..fvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr 104
                  + +G+sGtGKT+l + l+e l         +++ +  ++++++       +++l r +g +  +     ++   +l++alr++   ++l+ DE+++  
  CCE31110.1 631 FLFCGPSGTGKTLLTKALAEFLF--------DDPKAmiRFDMSEYQ----ERHALSRMIGAPPGY---VGHDAGGQLTEALRRKPF-SILLFDEVEKA- 712
                 678******************94........444331255555555....567778888888888...999999************.**********9. PP

      AAA_22 105 seealeeLrsllnl 118
                  +e+l+ L +l+++
  CCE31110.1 713 AKEVLTVLLQLMDD 726
                 9*******999996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       7.3   2.8e+03      75     131 ..      60     115 ..      44     173 .. 0.57
   2 !   27.6   3.5   8.9e-09   3.4e-06       2      63 ..     198     253 ..     197     475 .. 0.87
   3 !   16.9   0.0   1.6e-05    0.0062       3      51 ..     602     655 ..     600     679 .. 0.74
   4 ?    2.3   0.1      0.51   1.9e+02     131     162 ..     697     727 ..     686     745 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 7.3
      AAA_16  75 alareellrqlldeaesaeleawrekleeala..avpelagaeasrllellkrllalls 131
                 +l+r ++++  + +++   +++  ++ +++l   + p+   ++a ++++ l+++++l +
  CCE31110.1  60 TLFR-QVIERAHGDPQI--FDRNLKRSLTRLPaqDPPPEQVSLAPSFHAILRKAMDLQK 115
                 3322.444444444333..2222222233333222233333333556666555554433 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 8.9e-09
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 ++GReee++++ ++l+r  ++ p   +l+Ge+GvGK+++v+ l++++  ++   +  + +q+
  CCE31110.1 198 VIGREEEIRRVVRILSRRTKNNP---VLIGEPGVGKTTVVEGLAQRIVNRD---VPDNLKQC 253
                 78*************98888766...899***********99999888774...55555555 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 1.6e-05
      AAA_16   3 vGReeeleqLlsalervrsgrp.....elvllsGesGvGKsslvrellralekd 51 
                 vG +e ++ +++a++  rsg +     ++ l+ G+sG+GK+ l ++l++ l +d
  CCE31110.1 602 VGQKEAVHSVANAIRLQRSGLSnpnqpPSFLFCGPSGTGKTLLTKALAEFLFDD 655
                 777777888888888555544444666********************9988776 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.51
      AAA_16 131 srderplvlvlDdlqwadeaslqllaaLlrll 162
                 +r ++  +l++D++++a  + l++l +L++++
  CCE31110.1 697 RR-KPFSILLFDEVEKAAKEVLTVLLQLMDDG 727
                 33.44589****************99999874 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0065       2.5       2      59 ..     199     254 ..     198     306 .. 0.56
   2 !   25.8   0.0   1.9e-08   7.1e-06      22     138 ..     628     744 ..     601     757 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0065
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETT CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavnca 59 
                      ig++e+++++++ +++ +k + +v + Ge G+GK+++ + + ++  +++ p    +c 
       CCE31110.1 199 IGREEEIRRVVRILSRRTK-NNPV-LIGEPGVGKTTVVEGLAQRIVNRDVPDNLKQCK 254
                      6777888888877776544.3455.56**********999988777666554444443 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 1.9e-08
                      SS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHH CS
  Sigma54_activat  22 dlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekL 113
                      + s l  G sGtGK+ll +a+ e    + k ++++++++++e+   s++ G   G + G ++  +   ++++   ++l++De+++   e+ + L
       CCE31110.1 628 PPSFLFCGPSGTGKTLLTKALAEFLFDDPKAMIRFDMSEYQERHALSRMIGAPPG-YVGHDAGGQltEALRRKPFSILLFDEVEKAAKEVLTVL 720
                      467899**********************************************999.66655443323667777789****************** PP

                      HHHHHHSEEESBTSSSEEE--EEEE CS
  Sigma54_activat 114 lrvlqegevervGsskeikvdvrii 138
                      l+++++g+++  G+ + ++++  i+
       CCE31110.1 721 LQLMDDGRITD-GQGRVVDAKNCIV 744
                      *******9986.5555444444444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00022     0.085       6      81 ..     221     306 ..     217     404 .. 0.73
   2 !   12.0   0.0   0.00042      0.16       8      90 ..     634     727 ..     628     736 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00022
      AAA_14   6 vitGaRrvGKTtllkqlikell.....vkkesilyinldderd...kkla.dpekllelileklke.ekktylflDEiqevpewek 81 
                 v+ G   vGKTt+++ l+++        + +++  ++ld   +   +k++ ++e+ ++ +l+++++ +++ +lf DEi+ + ++ +
  CCE31110.1 221 VLIGEPGVGKTTVVEGLAQRIVnrdvpDNLKQCKLLSLDVGALvagSKFRgEFEERMKGVLKEVEDsKEMIVLFVDEIHLLMGAGS 306
                 5677779**********9888899877566778888888877744433333455667777777544578999*******9944433 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00042
      AAA_14   8 tGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe..............kllelileklkeekktylflDEiqev.pewekalkslvdeg 90 
                  G+  +GKT l k l++ l+ +++ ++ +++ + +++ +                  +l e++++    +  ++l++DE+ ++ +e+ ++l +l+d+g
  CCE31110.1 634 CGPSGTGKTLLTKALAEFLFDDPKAMIRFDMSEYQERHALSRMigappgyvghdaggQLTEALRR----KPFSILLFDEVEKAaKEVLTVLLQLMDDG 727
                 58999**********98877888999999999888865443324444555555233233333333....34567******9864889999****9998 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0019      0.72      32     109 ..     216     298 ..     203     303 .. 0.60
   2 !   14.5   0.0     5e-05     0.019      35      82 ..     630     677 ..     620     680 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0019
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkldkeky...lsltinfsaqtsanqlqdiiesklekrrkgvygPpggkk..lvvFvDDl 109
                  k++ +l+G+ G+GKt++++ l +++ ++++   l     +s    a    + +  ++e r kgv+      k  +v+FvD++
  CCE31110.1 216 TKNNPVLIGEPGVGKTTVVEGLAQRIVNRDVpdnLKQCKLLSLDVGALVAGSKFRGEFEERMKGVLKEVEDSKemIVLFVDEI 298
                 45667899***********9987776544331102222234555566666666666666666666665533221145566666 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 5e-05
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdii 82 
                 ++l++Gp+GtGKt+++k l + l ++   ++ + +s + + + l ++i
  CCE31110.1 630 SFLFCGPSGTGKTLLTKALAEFLFDDPKAMIRFDMSEYQERHALSRMI 677
                 589******************999999999******999999998887 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00088      0.34      45      75 ..     215     245 ..     200     298 .. 0.90
   2 !   12.5   0.0   0.00024     0.091      49      69 ..     630     650 ..     608     667 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00088
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavrag 75 
                 ++k+n vl+G +GvGK+ +   l+++ v+++
  CCE31110.1 215 RTKNNPVLIGEPGVGKTTVVEGLAQRIVNRD 245
                 578999******************9999876 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00024
   IstB_IS21  49 nivllGpsGvGKshlaialgv 69 
                 +++++GpsG+GK+ l+ al+ 
  CCE31110.1 630 SFLFCGPSGTGKTLLTKALAE 650
                 6899***************96 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.2    0.0009      0.34       4      22 ..     222     240 ..     221     481 .. 0.71
   2 !   11.4   0.0   0.00068      0.26       3      21 ..     632     650 ..     631     677 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0009
      AAA_33   4 lvGlpGsGKstlaerllkk 22 
                 l+G pG+GK+t++e+l+++
  CCE31110.1 222 LIGEPGVGKTTVVEGLAQR 240
                 89**************976 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00068
      AAA_33   3 llvGlpGsGKstlaerllk 21 
                 l++G++G+GK+ l + l++
  CCE31110.1 632 LFCGPSGTGKTLLTKALAE 650
                 89************99986 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1     0.004       1.5       1      24 [.      18      41 ..      18      43 .. 0.91
   2 ?   -0.4   0.0       3.5   1.3e+03      29      44 ..      61      76 ..      58      84 .. 0.78
   3 !   16.6   0.1   1.7e-05    0.0064       3      51 ..     112     158 ..     110     161 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.004
                HHHHHHHTTCSSB-HHHHHHHHHH CS
       Clp_N  1 AqelAkslghqyistEHLLlALle 24
                A +lA ++gh+++ + HL  +Ll+
  CCE31110.1 18 AMSLAEQYGHSQLLPVHLAVSLLD 41
                5689*****************997 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 3.5
                HHHHHHHHTTSSHHHH CS
       Clp_N 29 laarlLkkaGvdldal 44
                l+++++++a++d++  
  CCE31110.1 61 LFRQVIERAHGDPQIF 76
                689*********9865 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 1.7e-05
                 HHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHH CS
       Clp_N   3 elAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekl 51 
                 +l+k  ++++i+++HL  +L e+    ++ +L++a++ +++l +   ++
  CCE31110.1 112 DLQKIQKDSFIGVDHLITSLSEDH--SIQTALREANIPKAKLVQDAVQA 158
                 788999*************99999..*************9998765554 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.011       4.1       5      58 ..     198     253 ..     194     272 .. 0.70
   2 !   10.6   0.2   0.00068      0.26      25      48 ..     631     654 ..     627     753 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
  Mg_chelatase   5 vkGqe.eakralei.aaaGgHnlllvGppGsGKtmlakrlpsllpplseeealeva 58 
                   v+G+e e +r+++i +   + n +l+G pG GKt + + l++ + + +  + l+  
    CCE31110.1 198 VIGREeEIRRVVRIlSRRTKNNPVLIGEPGVGKTTVVEGLAQRIVNRDVPDNLKQC 253
                   555541446666662445677889***********999888766666655555555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00068
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllpp 48 
                   +l++Gp+G+GKt+l k+l++ l +
    CCE31110.1 631 FLFCGPSGTGKTLLTKALAEFLFD 654
                   79****************998854 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0012      0.45       3      22 ..     221     240 ..     219     251 .. 0.86
   2 !    9.1   0.0    0.0038       1.4       3      21 ..     632     650 ..     630     662 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0012
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                 v++G ++ GKTt++e La+r
  CCE31110.1 221 VLIGEPGVGKTTVVEGLAQR 240
                 89****************98 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0038
      AAA_28   3 vitGgestGKTtlleaLaa 21 
                  + G+++tGKT l++aLa+
  CCE31110.1 632 LFCGPSGTGKTLLTKALAE 650
                 689**************97 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0025      0.96       3      24 ..     222     243 ..     221     255 .. 0.86
   2 !   10.6   0.0    0.0015      0.57       2      23 ..     632     653 ..     631     671 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0025
  RNA_helicase   3 lyGpsgeGKStlakeLakallk 24 
                   l G++g+GK+t+++ La+++ +
    CCE31110.1 222 LIGEPGVGKTTVVEGLAQRIVN 243
                   78****************9984 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0015
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   +++Gpsg+GK++l+k La+ l 
    CCE31110.1 632 LFCGPSGTGKTLLTKALAEFLF 653
                   69**************998665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0035       1.3      19      41 ..     218     240 ..     203     258 .. 0.80
   2 !    8.9   0.0    0.0029       1.1      24     114 ..     634     726 ..     629     731 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0035
      AAA_30  19 rvavltGpAGtGKttalkalrea 41 
                    vl G +G GKtt++++l++ 
  CCE31110.1 218 NNPVLIGEPGVGKTTVVEGLAQR 240
                 45699*************99764 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0029
      AAA_30  24 tGpAGtGKttalkalreaweaaggrviglAptgkaAkv.Laeelgi.eastiakllkrlkgrarlepgtllivDEagmvdtkqlaallkaaek 114
                  Gp GtGKt + kal+e + ++ + +i +  ++ + +  L++ +g+ +++  +    +l+++ r +p ++l+ DE+  ++ + l+ ll+ +++
  CCE31110.1 634 CGPSGTGKTLLTKALAEFLFDDPKAMIRFDMSEYQERHaLSRMIGApPGYVGHDAGGQLTEALRRKPFSILLFDEVEKAAKEVLTVLLQLMDD 726
                 69*****************99987777777776665555999999867888888888888777778889999999999999999888888766 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.036        14       4      23 ..     222     241 ..     220     281 .. 0.89
   2 ?   -2.1   0.0       8.8   3.3e+03      60      77 ..     556     573 ..     543     577 .. 0.82
   3 ?    0.6   0.0       1.2   4.6e+02       5      23 ..     634     652 ..     631     663 .. 0.83
   4 !    9.3   0.0    0.0025      0.97      64     111 ..     702     749 ..     693     754 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.036
       AAA_3   4 legvPGlaktllvkalakal 23 
                 l g PG++kt++v+ la+ +
  CCE31110.1 222 LIGEPGVGKTTVVEGLAQRI 241
                 6789*************976 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 8.8
       AAA_3  60 pvfanllladeinrappk 77 
                 +++++++ ad in   ++
  CCE31110.1 556 AMVTDIVTADHINEIVAR 573
                 57899********87665 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 1.2
       AAA_3   5 egvPGlaktllvkalakal 23 
                  g  G++ktll kala+ l
  CCE31110.1 634 CGPSGTGKTLLTKALAEFL 652
                 5678************976 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0025
       AAA_3  64 nllladeinrappktqsalleameerqvtvegethklpepflvlatqn 111
                 ++ll de+++a+  + + ll+ m++ ++t ++ +    ++ +v+ t n
  CCE31110.1 702 SILLFDEVEKAAKEVLTVLLQLMDDGRITDGQGRVVDAKNCIVVMTSN 749
                 589**************************9887777777888888877 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00094      0.36       4      43 ..     202     241 ..     199     247 .. 0.85
   2 ?    7.5   0.0      0.01       3.9      21      43 ..     625     652 ..     602     659 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00094
                 HHHHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   4 eeetealgkklakalgdvilLeGdLGaGKTtlvrglakal 43 
                 eee++++ + l + +++  +L G+ G+GKTt v gla+ +
  CCE31110.1 202 EEEIRRVVRILSRRTKNNPVLIGEPGVGKTTVVEGLAQRI 241
                 67888888889888888999*****************987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.01
                 E.....EEEEESTTSSHHHHHHHHHHHT CS
        TsaE  21 v.....ilLeGdLGaGKTtlvrglakal 43 
                       +l+ G+ G+GKT l+++la+ l
  CCE31110.1 625 PnqppsFLFCGPSGTGKTLLTKALAEFL 652
                 0445558999**************9865 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00034      0.13       3      25 ..     222     257 ..     221     302 .. 0.66
   2 ?   -1.6   1.0       9.7   3.7e+03      69     118 ..     457     513 ..     396     527 .. 0.62
   3 !   10.0   0.2    0.0026      0.99       3      22 ..     633     652 ..     632     837 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00034
      AAA_18   3 ltGtpGvGKttlakeLskrl.gf............g 25 
                 l G pGvGKtt+ + L++r  +             +
  CCE31110.1 222 LIGEPGVGKTTVVEGLAQRIvNRdvpdnlkqckllS 257
                 8899************99963335543333333343 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 9.7
      AAA_18  69 s.....aleegknlvidghlaeleseaakdikk...vvLt.aspeelleRlekRgyeea 118
                 +     a  + +   ++  la l+  ++ +ik+   ++L  ++ +el +Rle+  ++++
  CCE31110.1 457 QirlrqA--KRDAENVEEELAPLRAKYQSEIKRseqIHLAkVKLDELEKRLEDAINMNN 513
                 2444322..23333366666666666666666677777751455888888888766655 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.0026
      AAA_18   3 ltGtpGvGKttlakeLskrl 22 
                  +G++G+GKt l+k+L++ l
  CCE31110.1 633 FCGPSGTGKTLLTKALAEFL 652
                 79**************9854 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.7    0.0068       2.6      35      96 ..     219     301 ..     191     305 .. 0.52
   2 ?    4.3   0.0     0.079        30      31      55 ..     626     650 ..     597     660 .. 0.70
   3 ?    1.8   0.0      0.48   1.8e+02      84     114 ..     700     730 ..     686     775 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0068
      RuvB_N  35 hvllyGpPGlGkttlak.....iiakelgvklkits......gPvl.......ekagdlaalltnleekd...vlfideihrl 96 
                   +l+G PG+Gktt+ +     i+ +++  +lk+        g  +       e +  + ++l+++e+++   vlf+deih l
  CCE31110.1 219 NPVLIGEPGVGKTTVVEglaqrIVNRDVPDNLKQCKllsldvGALVagskfrgEFEERMKGVLKEVEDSKemiVLFVDEIHLL 301
                 346789*******9865111125555555555543211111122221111111223446667766654333336777777765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.079
      RuvB_N  31 ealdhvllyGpPGlGkttlakiiak 55 
                 ++    l++Gp G Gkt l+k +a+
  CCE31110.1 626 NQPPSFLFCGPSGTGKTLLTKALAE 650
                 4455689*************99987 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.48
      RuvB_N  84 ekdvlfideihrlsraveevlysamedfrld 114
                 +  +l+ de+ + +++v  vl + m+d r+ 
  CCE31110.1 700 PFSILLFDEVEKAAKEVLTVLLQLMDDGRIT 730
                 56799**********************9874 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2     8e-05      0.03       4      43 ..     201     240 ..     199     247 .. 0.89
   2 ?    4.3   0.0     0.085        32     102     138 ..     273     309 ..     248     377 .. 0.73
   3 ?    3.6   0.0      0.14        53      21      68 ..     628     676 ..     619     728 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8e-05
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeiien 43 
                 Re+e++++ +il+r +++  ++ G  g+GKt+++  ++++
  CCE31110.1 201 REEEIRRVVRILSRRTKNNPVLIGEPGVGKTTVVEGLAQR 240
                 ********************************99877665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.085
    ATPase_2 102 vfkaielllekikkkgkkiiiiiDelqklidlglnga 138
                  ++ ++ +l+++++++  i++++De+  l   g+ g+
  CCE31110.1 273 FEERMKGVLKEVEDSKEMIVLFVDEIHLLMGAGSSGE 309
                 57789999*******999********99986665533 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.14
    ATPase_2  21 eiyfiY.GpegsGKtaLlkeiienledkdkyviyyialreesiskldef 68 
                 ++ f++ Gp g GKt L k ++e l d  k  i ++  + ++ + l+++
  CCE31110.1 628 PPSFLFcGPSGTGKTLLTKALAEFLFDDPKAMIRFDMSEYQERHALSRM 676
                 45555559*******9999999988766665555554444444555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0    0.0009      0.34      79     122 ..     197     240 ..     167     254 .. 0.70
   2 ?    6.3   0.0     0.022       8.5     101     120 ..     630     649 ..     583     660 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0009
                  EEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  79 vllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpe 122
                  +++ ++++ + + ++ ++ +++  vl+G+ GvGK+t+++ l+++
   CCE31110.1 197 PVIGREEEIRRVVRILSRRTKNNPVLIGEPGVGKTTVVEGLAQR 240
                  444444445555566666666778**************999876 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.022
                  EEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinall 120
                    +++G+SG GK+ L +al+
   CCE31110.1 630 SFLFCGPSGTGKTLLTKALA 649
                  678**********9999986 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00044      0.17       9      48 ..     216     256 ..     209     283 .. 0.79
   2 ?    4.1   0.0      0.14        53      12      34 ..     630     652 ..     618     665 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00044
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelgg.vkpeeillv 48 
                 ++++ ++++ pG GKT+v+++  + +v++    +++++ l+
  CCE31110.1 216 TKNNPVLIGEPGVGKTTVVEGLAQRIVNRDVpDNLKQCKLL 256
                 45667899*************99988876631334566555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.14
      AAA_19  12 vllvtaGpGtGKTrvlkhivall 34 
                  +l  ++ GtGKT ++k+  + l
  CCE31110.1 630 SFLFCGPSGTGKTLLTKALAEFL 652
                 34555667*****9999887766 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0014      0.52       3      30 ..     218     245 ..     216     302 .. 0.68
   2 ?    7.0   0.0     0.011       4.3       4      28 ..     630     653 ..     627     726 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0014
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfid 30 
                 ++ +++G++g+GKTt++  l ++++  d
  CCE31110.1 218 NNPVLIGEPGVGKTTVVEGLAQRIVNRD 245
                 56699***********999866666555 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.011
      AAA_24   4 kiliyGpsgiGKTtlakelgpkplf 28 
                 ++l  Gpsg+GKT l k l  ++lf
  CCE31110.1 630 SFLFCGPSGTGKTLLTKAL-AEFLF 653
                 56789************99.66666 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.5   1.9e+02     115     156 ..     194     244 ..     100     248 .. 0.72
   2 !   14.3   0.0   4.1e-05     0.016     115     204 ..     603     704 ..     398     709 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.5
       T2SSE 115 k...........ekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156
                 k            ++ ++l++   ++ + ++ G  g GKtt++  l + i ++
  CCE31110.1 194 KmdpvigreeeiRRVVRILSRR--TKNNPVLIGEPGVGKTTVVEGLAQRIVNR 244
                 1445555552224444555554..6778888999*******998888877655 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 4.1e-05
       T2SSE 115 k............ekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnak..kakvtfadllraaLRlr 199
                                +++ l+++ ++  ++l+ G+ g+GKt l+ al +++ ++  + ++  D  E+q ++a    + a    ++ ++   l +aLR++
  CCE31110.1 603 GqkeavhsvanaiRLQRSGLSNP-NQPPSFLFCGPSGTGKTLLTKALAEFLFDD-PKAMIRFDMSEYQERHALSRMIGAPpgYVGHDAGGQLTEALRRK 699
                 05555555555555566667777.77789*****************99999998.7777778*******999888777777788999999999999999 PP

       T2SSE 200 PDrim 204
                 P  i+
  CCE31110.1 700 PFSIL 704
                 97776 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.039        15      15      33 ..     221     239 ..     213     245 .. 0.86
   2 !    9.6   0.0    0.0034       1.3      16      56 ..     633     672 ..     629     731 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.039
                 EEEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllag 33 
                 +++Ge G GK+t+++ la+
  CCE31110.1 221 VLIGEPGVGKTTVVEGLAQ 239
                 79***********998876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0034
                 EEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGGB-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagllkp.teGeilldgkdlkeqeles 56 
                 + G++G+GK+ L k+la+ l +  +  i++d+ + +e  ++ 
  CCE31110.1 633 FCGPSGTGKTLLTKALAEFLFDdPKAMIRFDMSEYQE--RHA 672
                 68**************997644156666677666665..444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00054      0.21       4      31 ..     221     248 ..     220     264 .. 0.87
   2 ?    2.8   0.0      0.26        97       6      22 ..     634     650 ..     630     671 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00054
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpq 31 
                 +l Ge+G+GKTt +++la+ +  ++ p 
  CCE31110.1 221 VLIGEPGVGKTTVVEGLAQRIVNRDVPD 248
                 689****************998887765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.26
                 EC-TTTCHHHHHHHHHH CS
       NACHT   6 qGeaGsGKTtLlqklal 22 
                  G++G GKT L + la+
  CCE31110.1 634 CGPSGTGKTLLTKALAE 650
                 69*********999986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.012       4.6      22      42 ..     217     237 ..     208     246 .. 0.81
   2 ?    6.5   0.0     0.018       6.8      24      46 ..     630     652 ..     619     663 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.012
      AAA_29  22 kgatlltGpsGsGKSTllDAi 42 
                 k++ +l+G+ G+GK+T++  +
  CCE31110.1 217 KNNPVLIGEPGVGKTTVVEGL 237
                 45789***********99766 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.018
      AAA_29  24 atlltGpsGsGKSTllDAiqalL 46 
                 ++l+ GpsG+GK+ l  A++  L
  CCE31110.1 630 SFLFCGPSGTGKTLLTKALAEFL 652
                 589*********99888877655 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.52     2e+02      10      50 ..     203     243 ..     194     249 .. 0.77
   2 ?   -0.2   0.0       2.3   8.8e+02     126     144 ..     283     301 ..     267     319 .. 0.77
   3 !    9.1   0.0    0.0031       1.2       7      49 ..     603     653 ..     599     660 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.52
                 HHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII  10 eaienlleklkskrdkrglikmaTGtGKTlvaaklierllk 50 
                 e i++++  l+ + +++ ++  + G+GKT v   l++r+ +
  CCE31110.1 203 EEIRRVVRILSRRTKNNPVLIGEPGVGKTTVVEGLAQRIVN 243
                 556666666665666777899999*******9888887765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2.3
                 .HHHTTT-SEEEEETGGGT CS
      ResIII 126 eellrdrfdviiiDEaHrl 144
                 e  ++++  v+++DE H l
  CCE31110.1 283 EVEDSKEMIVLFVDEIHLL 301
                 44556666699******76 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0031
                 HHHHHHHHHT..............TTSEEEEEESTTSTHHHHHHHHHHHH- CS
      ResIII   7 yQeeaienlleklks........krdkrglikmaTGtGKTlvaaklierll 49 
                  Q+ea+ ++++++          ++   +l+  + GtGKTl+  +l+e l+
  CCE31110.1 603 GQKEAVHSVANAIRLqrsglsnpNQPPSFLFCGPSGTGKTLLTKALAEFLF 653
                 699999999998877888999888899**************9988887666 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0055       2.1       3      25 ..     221     243 ..     220     255 .. 0.84
   2 ?    5.0   0.0      0.07        27       3      34 ..     632     662 ..     631     675 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0055
                 EEESSTTSSHHHHHHCHCT-CCC CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfs 25 
                 vl+G+ gvGKt+ ++ + ++ ++
  CCE31110.1 221 VLIGEPGVGKTTVVEGLAQRIVN 243
                 79**********99988876655 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.07
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigv 34 
                 +++G sg+GKt l k + e  f++  k++i  
  CCE31110.1 632 LFCGPSGTGKTLLTKALAEFLFDDP-KAMIRF 662
                 689*************998888654.455555 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.5     0.027        10       9     120 ..     227     533 ..     221     622 .. 0.62
   2 ?    3.3   0.0      0.21        80       7      26 ..     636     655 ..     632     675 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.027
                 TSSHHHHHHHHHHHHHHTT.....--EEEEEEEESSCCCCHHTTEB-HHHH................................................ CS
                 xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxx................................................ RF
        CbiA   9 GvGKTtlaanLaralarrg.....lrVllvDaDpqannlaileglendiep................................................ 54 
                 GvGKTt++ +La+ + +r      ++  l+ +D+ a  +           +                                                
  CCE31110.1 227 GVGKTTVVEGLAQRIVNRDvpdnlKQCKLLSLDVGALVAG--S-------Kfrgefeermkgvlkevedskemivlfvdeihllmgagssgeggmdaan 316
                 8899999988888666532111112222222333322222..1.......1111112234455555555666666666666666666666666666666 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        CbiA  55 ................................................................................................... 54 
                                                                                                                    
  CCE31110.1 317 llkpmlargqlhcigattlaeyrkyvekdaaferrfqqvlvkeptipetisilrglkerydrhhrvtildsalvaaanlaaryltsrrmpdsaidlvde 415
                 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 PP

                 ..................................................CCHCCCHHHHHHCHCHHHH...EEEEEEEEESS...-TTCHHHHHHHHH CS
                 ..................................................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ..................................................dlkrllellealgkkkall.lkiagvvlnrvdgeneetllkealeelkq 102
                                                                   d++ ++e l+ l+ k++ +  +   + l +v+ ++ e++l++a+   + 
  CCE31110.1 416 aaaavrvaresqpeiidslerklrqllieiaalekehdeasqirlrqakrDAENVEEELAPLRAKYQSEiKRSEQIHLAKVKLDELEKRLEDAINMNNT 514
                 666666666666666666666666666666666666666777766666665555555555555555555555555556666666666666666666554 PP

                 HC.TS-EEEEEE--CCHCC CS
                 xx.xxxxxxxxxxxxxxxx RF
        CbiA 103 ry.gvpvlgviprdeavae 120
                 +  ++  +g ip+  av++
  CCE31110.1 515 AKaADLQYGAIPEQLAVIK 533
                 4444444555665555554 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.21
                 STTSSHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxx RF
        CbiA   7 kGGvGKTtlaanLaralarr 26 
                  +G+GKT l+ +La  l ++
  CCE31110.1 636 PSGTGKTLLTKALAEFLFDD 655
                 59***********9888665 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.021         8      39      82 ..     211     255 ..     202     303 .. 0.74
   2 ?    6.5   0.0     0.018         7      47      68 ..     630     651 ..     600     662 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.021
       Rad17  39 vLesrkkriLLisGPsGCgkstvvkvLskelgi.klrewlnpvsl 82 
                 +L +r k+  ++ G +G gk+tvv+ L++  +  ++ ++l   +l
  CCE31110.1 211 ILSRRTKNNPVLIGEPGVGKTTVVEGLAQRIVNrDVPDNLKQCKL 255
                 6777777777788**************987664146666665555 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.018
       Rad17  47 iLLisGPsGCgkstvvkvLske 68 
                   L +GPsG gk+   k L+  
  CCE31110.1 630 SFLFCGPSGTGKTLLTKALAEF 651
                 5799**********99999865 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.098        37      17      40 ..     218     241 ..     203     248 .. 0.77
   2 !    8.3   0.0    0.0033       1.2      12      58 ..     624     671 ..     614     697 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.098
  Zeta_toxin  17 klillgGqpGAGKselaellkdel 40 
                    +l G pG GK+++ e l++++
  CCE31110.1 218 NNPVLIGEPGVGKTTVVEGLAQRI 241
                 444677***********9999886 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0033
  Zeta_toxin  12 sqerPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelh 58 
                 + ++P + l  G +G GK+ l ++l++ l    + ++r+d  +++e+h
  CCE31110.1 624 NPNQPPSFLFCGPSGTGKTLLTKALAEFLFdDPKAMIRFDMSEYQERH 671
                 45899999*******************9998999************99 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00059      0.23       4      28 ..     222     246 ..     219     249 .. 0.89
   2 ?    0.8   0.0       1.1     4e+02       3      23 ..     632     652 ..     630     669 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00059
                 EE--TTSSHHHHHHHHHHHH...GG CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkssgv 28 
                 + G+pGvGKtT+v+ +++ + +++v
  CCE31110.1 222 LIGEPGVGKTTVVEGLAQRIVNRDV 246
                 67****************9998877 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 1.1
                 EEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlell 23 
                 +  Gp+G+GKt l k ++e l
  CCE31110.1 632 LFCGPSGTGKTLLTKALAEFL 652
                 567********9999988876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       6.1   2.3e+03     165     190 ..      11      36 ..       8      38 .. 0.88
   2 ?    9.0   0.0    0.0024      0.93      37     116 ..     221     300 ..     190     319 .. 0.76
   3 ?    2.2   0.7       0.3   1.1e+02      50     138 ..     392     482 ..     390     521 .. 0.74
   4 ?    3.7   0.1       0.1        40      37      54 ..     632     649 ..     630     655 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 6.1
      AAA_25 165 vgalvealeriarrtgaavllvhHvg 190
                 ++++ve++ ++a+++g   ll  H++
  CCE31110.1  11 AQKAVEDAMSLAEQYGHSQLLPVHLA 36 
                 58899*******************86 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0024
      AAA_25  37 llaGapgtGKttlaldlalava.tGkpwlg...pvapeqgkV.lyvsaEdsedelrrRlravgealrddarllvldlagveslpL 116
                 +l+G pg+GKtt++  la  ++ +   +++   +++     V  +v++   + e+++R++ v+++++d ++  vl +   ++++L
  CCE31110.1 221 VLIGEPGVGKTTVVEGLAQRIVnR--DVPDnlkQCKLLSLDVgALVAGSKFRGEFEERMKGVLKEVEDSKEMIVLFV---DEIHL 300
                 699******************944..455545644444444413444455588999999999999988777777765...34555 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.3
      AAA_25  50 aldlalavatGkpwlg...pvapeqgkVlyvsaEdse...delrrRlravgealrddarllvldlagv.eslpLfakdrggtlltadvdaleaaie 138
                 a +la+ ++t +  ++   +++ e ++ + v+ E +    d l+r+lr+++ ++++ +++  +   ++  +++L++++r+ + ++++++ l+a+ +
  CCE31110.1 392 AANLAARYLTSRRMPDsaiDLVDEAAAAVRVARESQPeiiDSLERKLRQLLIEIAALEKE--H---DEaSQIRLRQAKRDAENVEEELAPLRAKYQ 482
                 678888888888888888888888888888888888611146777888777777554544..3...3445799*9999999998888888877655 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.1
      AAA_25  37 llaGapgtGKttlaldla 54 
                 l++G++gtGKt l+  la
  CCE31110.1 632 LFCGPSGTGKTLLTKALA 649
                 689**********98776 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   0.00014     0.052      15      80 ..     589     655 ..     582     661 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00014
                 -HHHHHHHHHHH--S-HHHHHHHHHHHHHHHT-S.S-SS-EEEEEEE-TTSSHHHHHHHHHHHHSTT CS
      Torsin  15 nleeLekdlekklfGqhlvkklvvksvkaylene.kpkkpLvlsfhGwtGtGknfvaeiiaenlyrd 80 
                 +l ++e+ l k ++Gq  + ++v ++++   +   +p++p  + f G +GtGk  +++ +ae l+ d
  CCE31110.1 589 KLVNMERVLGKVVVGQKEAVHSVANAIRLQRSGLsNPNQPPSFLFCGPSGTGKTLLTKALAEFLFDD 655
                 56678999999****************97765434999************************99976 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.37   1.4e+02      23      40 ..     221     238 ..     216     290 .. 0.91
   2 ?   11.1   0.0    0.0011      0.41      19      49 ..     628     658 ..     616     683 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.37
      AAA_23  23 lItGpNGaGKTTildAik 40 
                 +++G+ G GKTT+++ + 
  CCE31110.1 221 VLIGEPGVGKTTVVEGLA 238
                 67899*********9886 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0011
      AAA_23  19 kgltlItGpNGaGKTTildAiklaLygetpr 49 
                 ++ +l++Gp G+GKT +  A+   L+ +++ 
  CCE31110.1 628 PPSFLFCGPSGTGKTLLTKALAEFLFDDPKA 658
                 789******************9999988765 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0065       2.5      44      81 ..     208     245 ..     183     300 .. 0.76
   2 ?    2.4   0.0      0.19        72      55      88 ..     630     663 ..     572     680 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0065
      DUF815  44 teqfleglpannvLLwGarGtGKSslvkallneyaeeg 81 
                 + + l+ ++ nn +L+G+ G+GK ++v  l +++ ++ 
  CCE31110.1 208 VVRILSRRTKNNPVLIGEPGVGKTTVVEGLAQRIVNRD 245
                 45667778889999****************99988776 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.19
      DUF815  55 nvLLwGarGtGKSslvkallneyaeegLrlieve 88 
                   L+ G  GtGK  l kal + + ++  ++i  +
  CCE31110.1 630 SFLFCGPSGTGKTLLTKALAEFLFDDPKAMIRFD 663
                 57999*************9987777666666555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.013       5.1       5      28 ..     221     244 ..     217     261 .. 0.83
   2 ?    4.4   0.0     0.067        26       4      27 ..     631     654 ..     628     662 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.013
                 EEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54   5 llvGlqGaGKTttlaKLaallkke 28 
                 +l+G  G+GKTt +  La+++ ++
  CCE31110.1 221 VLIGEPGVGKTTVVEGLAQRIVNR 244
                 799***************998876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.067
                 EEEEESTTSSHHHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaallkk 27 
                 +l++G+ G+GKT  +  La+ l +
  CCE31110.1 631 FLFCGPSGTGKTLLTKALAEFLFD 654
                 79***********99999988755 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.017       6.4       2      22 ..     223     243 ..     222     262 .. 0.86
   2 ?    3.6   0.0      0.13        50       2      22 ..     634     654 ..     633     664 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.017
  ATP_bind_1   2 vGpaGsGKttfvgalseilel 22 
                 +G +G+GKtt v+ l++ + +
  CCE31110.1 223 IGEPGVGKTTVVEGLAQRIVN 243
                 8*************9997765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.13
  ATP_bind_1   2 vGpaGsGKttfvgalseilel 22 
                 +Gp G GKt +++al+e+l +
  CCE31110.1 634 CGPSGTGKTLLTKALAEFLFD 654
                 8****************9865 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.33   1.2e+02      27      43 ..     221     237 ..     216     259 .. 0.91
   2 ?    3.8   0.2     0.099        38     180     282 ..     449     531 ..     341     565 .. 0.65
   3 ?    1.8   0.0      0.41   1.6e+02      27      48 ..     632     653 ..     622     678 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.33
      AAA_15  27 vliGkNnsGKSsileal 43 
                 vliG+ ++GK++++e l
  CCE31110.1 221 VLIGEPGVGKTTVVEGL 237
                 8************9977 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.099
      AAA_15 180 lkkeeelknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelkkilkkkidkikkfnykg 278
                  k+++        ++ +++l +akR++++ ++e   +l  k +++i+             e++   + kl+e++k l++ ++ + + k  +++++ +++
  CCE31110.1 449 EKEHD--------EASQIRLRQAKRDAENVEEEL-APLRAKYQSEIK-----------RSEQIHLAKVKLDELEKRLEDAINMNNTAKAADLQYGAIPE 527
                 22222........445555555555555554444.444444444444...........44555555556666666665555544444555555555544 PP

      AAA_15 279 kkne 282
                 +  +
  CCE31110.1 528 QLAV 531
                 4444 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.41
      AAA_15  27 vliGkNnsGKSsilealdlFln 48 
                 +++G+ ++GK+ +++al  Fl 
  CCE31110.1 632 LFCGPSGTGKTLLTKALAEFLF 653
                 8****************87764 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0       0.2        75     232     327 .]     130     231 ..     121     231 .. 0.70
   2 ?    5.3   0.0     0.022       8.3      38      56 ..     634     652 ..     631     678 .. 0.70
   3 ?   -0.8   0.0       1.6   5.9e+02     233     286 ..     767     820 ..     759     835 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.2
       AAA_6 232 eeseeelllralrdvnlpk..lvaeDvplfkgl..isdlFpgvelpesdyeeleeaieevlkekklqle...ekfvekviqlyetlkvrhgvmlvGetg 323
                 + se++ +  alr++n+pk  lv++ v+  +g   ++    + e ++++ ++++  +++++++kk+++    e+ +++v+++    ++++  +l+Ge+g
  CCE31110.1 130 SLSEDHSIQTALREANIPKakLVQDAVQAIRGTrrVDSKTADSEQENENLDKFTIDLTAMARDKKMDPVigrEEEIRRVVRILS-RRTKNNPVLIGEPG 227
                 578999999*******99543888888888876223444445566667778888888999999888876222455555555554.3456677999**** PP

       AAA_6 324 sgKt 327
                  gKt
  CCE31110.1 228 VGKT 231
                 *998 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.022
       AAA_6  38 aGpagtGKtEtvkdLakal 56 
                  Gp+gtGKt  +k La+ l
  CCE31110.1 634 CGPSGTGKTLLTKALAEFL 652
                 6***************987 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.6
       AAA_6 233 eseeelllralrdvnlpklva..eDvplfkglisdlFpgvelpesdyeeleeaiee 286
                  + +el++ alr+  lp +++  + v +f++l+++   ++   + +  e+++ +e+
  CCE31110.1 767 APTRELVMSALRNYFLPEFLNriNSVVIFNRLTRKEIRKI--VDIRIGEIQKRLED 820
                 566789*************984457889999988765554..44555555555555 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.24        93       5      23 ..     221     239 ..     217     247 .. 0.83
   2 ?    6.3   0.0      0.02       7.6       5      23 ..     632     650 ..     630     695 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.24
   PduV-EutP   5 lliGkvgsGKttLtqalkg 23 
                 +liG+ g+GKtt+ + l +
  CCE31110.1 221 VLIGEPGVGKTTVVEGLAQ 239
                 79**********9887766 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.02
   PduV-EutP   5 lliGkvgsGKttLtqalkg 23 
                 l+ G++g+GKt Lt+al +
  CCE31110.1 632 LFCGPSGTGKTLLTKALAE 650
                 799*************987 PP

>> Nop16  Ribosome biogenesis protein Nop16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   0.00071      0.27     139     207 ..     145     210 ..     109     213 .. 0.79
   2 ?    1.1   3.3      0.88   3.4e+02      64     153 ..     451     539 ..     412     562 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00071
       Nop16 139 kkkktevvk.eLekeaarekakkerhlsereeewlerLvekhGdDyeaMarDrkLNpmqqtegdlkrrik 207
                 + +k ++v+ + ++++ +++++ +   se+e+e l    +k+  D  aMarD+k+ p    e +++r ++
  CCE31110.1 145 NIPKAKLVQdAVQAIRGTRRVDSKTADSEQENENL----DKFTIDLTAMARDKKMDPVIGREEEIRRVVR 210
                 44556666657888888889999999999999998....57889***********************987 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.88
       Nop16  64 ekklskanekeekekkkleeeesdekklskgearieRDeeGkivkviegkkkkeneledpleeleedeekeeeee.....kkkktevvkeLekea 153
                 e++ +++ + +++++++++ ee+ +   +k + +i+R e+    kv  +  + e+ led ++  ++ +++    +      +++ +v+keLe++ 
  CCE31110.1 451 EHDEASQIRLRQAKRDAENVEEELAPLRAKYQSEIKRSEQIHLAKVKLD--ELEKRLEDAINMNNTAKAA----DlqygaIPEQLAVIKELEARK 539
                 3333333333444444444455555566666677777777777777776..4555555544443333222....022334788889999999765 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   8.8     0.011       4.2      13      62 ..     432     482 ..     429     506 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.011
  Cep57_CLD_2  13 dsltrklqvheeelkrLnkERdsalr.qLgvAyeelneLkaevealrkELk 62 
                  dsl+rkl    +e+++L kE+d+a + +L++A +++++  +e+  lr + +
   CCE31110.1 432 DSLERKLRQLLIEIAALEKEHDEASQiRLRQAKRDAENVEEELAPLRAKYQ 482
                  9************************989***************99998744 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.3     0.057        22       4      54 ..     429     480 ..     427     495 .. 0.88
   2 ?    0.4   0.1       2.3   8.8e+02       6      19 ..     498     511 ..     496     517 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.057
        ZapB   4 elLeqLEskiqkaidtitlLqmeieeLkeen.eelkeenreleeeneqlkee 54 
                 e+ + LE k  +++ +i++L +e +e  +   ++ k+ ++++eee+  l++ 
  CCE31110.1 429 EIIDSLERKLRQLLIEIAALEKEHDEASQIRlRQAKRDAENVEEELAPLRAK 480
                 789**********************99885559************9999965 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 2.3
        ZapB   6 LeqLEskiqkaidt 19 
                 L++LE++ + ai++
  CCE31110.1 498 LDELEKRLEDAINM 511
                 9**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (926 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1061  (0.0591779); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              47  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.44
# Mc/sec: 6367.10
//
Query:       CCE31111.1  [L=271]
Description: uncharacterized protein CPUR_04962 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-32  110.8   0.1    3.7e-32  110.3   0.1    1.3  1  Mhr1      Transcriptional regulation of mitochondrial recombi


Domain annotation for each model (and alignments):
>> Mhr1  Transcriptional regulation of mitochondrial recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.1   2.1e-36   3.7e-32       1      84 [.      42     127 ..      42     128 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 2.1e-36
        Mhr1   1 geqiyvfrnletgqVvYSltrvleknkalkqlpfvgkkqvpaklRkDlWkplavvefpkg..eagvsvyqkLrelrklreleweke 84 
                 ge+i+vf++ +++qV+YS+t  l+ n+ +kqlpf+gkk++pa+lRkD+W+++a++++pk+  e+g+svyqkLrel++l+e++w++e
  CCE31111.1  42 GEKIWVFTHRRSDQVIYSVTYPLRFNHGMKQLPFNGKKSKPATLRKDYWSVMARIDLPKNqsEVGLSVYQKLRELKHLHEVCWGDE 127
                 799*******************************************************99999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1929.55
//
Query:       CCE31112.1  [L=306]
Description: uncharacterized protein CPUR_04963 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-06   28.0   0.0    3.3e-05   24.4   0.0    2.2  1  Sulfotransfer_3  Sulfotransferase family


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.8e-09   3.3e-05       1     216 [.       5     220 ..       5     221 .. 0.64

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.8e-09
                      -EEEE--TTSSHHHHHHHHHT.........STT....EE--S--.--TT.-SBHHHHHHHHTT-S...TTTHHHHHHHHHHT--HHHHHHHHHH CS
  Sulfotransfer_3   1 PifivGlpRSGTTlLhrlLaa.........hpd....vripeetlfvaprllalleawskdgrelrrlldagltqeeaelphledaeepeedlq 81 
                      P+f++ +pR+ +T+ +r++                  +++++e+  v pr+++ +++++ +g ++++     ++ +   l + +d ++++   +
       CCE31112.1   5 PVFCMTHPRACSTAFERVFMTrretlasqhE-PfgdaFYFGTEC--VSPRFKDDAARREASGASNAT-----YQST---L-QAFDDVQKQ-GKR 85 
                      99****************9997777754421.133345555555..555555555544444333333.....2222...1.223333322.234 PP

                      HHHTT-BHHHH....HHHHHHHTTTSEEEE....EESSGGG-HHHHHHHBSSEEEEEEE--H.HHHHHHHHHTT----------..-HHHHHHH CS
  Sulfotransfer_3  82 llraalasvil....ealarvpsyarwlvd....KsPshlfrldlllelfPdAkfihlvRdpvdtvlssyvslfgkkresysedsldeledale 167
                      ++ +++a +++    +   + p+ a  l       +P+++ r     + + + ++ +l+R+p ++ ++sy +      ++ s   +d++ +  e
       CCE31112.1  86 VFIKDMAYYLFpepkD--QHNPQIAPSLGGghedNNPTFIPR-----KDLEKFQYTFLIRHP-RRSVPSYWRCCIPPLNKVS--GFDSF-WPSE 168
                      5667777777733222..345555555544665577777775.....778889*********.8899999776433333333..33333.3555 PP

                      HHHHHHHHHHHHHHH...S-TTSEEEEEHHHHHH-HHHHHHHHHHHHT---- CS
  Sulfotransfer_3 168 ewarayerllaarar...lppdrfldvrYedLvadpegtlrriyeflglpwd 216
                      + ++++ ++ +   +   +++d++  v+ +dL  +pe ++++ +e+ g++++
       CCE31112.1 169 MGYKELVKFFDYALEtglVDKDQLTVVDADDLLDNPEPMIQKFCERTGIEFH 220
                      566666666666666788********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2231.86
//
Query:       CCE31113.1  [L=84]
Description: uncharacterized protein CPUR_04964 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 650.66
//
Query:       CCE31114.1  [L=332]
Description: related to bifunctional P-protein (chorismate mutase-P/prephenate dehydratase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-58  196.5   0.0    4.4e-58  196.1   0.0    1.2  1  PDT       Prephenate dehydratase
    3.8e-05   23.4   0.0    0.00011   21.9   0.0    1.8  1  ACT       ACT domain


Domain annotation for each model (and alignments):
>> PDT  Prephenate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.0   4.9e-62   4.4e-58       1     181 [.       9     226 ..       9     228 .. 0.97

  Alignments for each domain:
  == domain 1  score: 196.1 bits;  conditional E-value: 4.9e-62
                 EEEES-TTSHHHHHHCCCS.....EEEEES-HHHHHHHHCTTS-SEEEEEEEESSS-B-HHHHHHHHH.S....SEEEEEEEEEE---EEEE-TT-... CS
         PDT   1 vaylGpegtyshqAalkvfkaedvelipvasieevfeavekgeadyavvPiENsteGsVnetlDlLlkes....dlkivgEvvlpiehcLlakpkt... 92 
                 v+ylGp+++yshqA+++vf++++  l pvasi++vfe  ++g ++ ++vP+ENst+GsV+ tlD+L++++    d+ i gE+++ ++hcL+++++    
  CCE31114.1   9 VSYLGPTASYSHQAVQQVFSEDKWALQPVASIDDVFEVTQDGFTTAGIVPFENSTNGSVVFTLDNLADRHgrykDVTIDGEIFVGVHHCLVGRRDPnep 107
                 79*****************************************************************98765556****************9999999* PP

                 ..............................-TTT--EEEE-HHHHHHTHHHHHH-.TTSEEEE-S-HHHHHHHHHHCT-TTEEEEE-HHHHHHTT-EEE CS
         PDT  93 ..............................kleeikkvyShpqalgQcrkfLeehlpqvervavestaeAakkveassdkdaaaiasevaaelyglkvl 161
                                               +++++k+vyShpqa+gQc+ fL+++l++ve+++v+st++Aa++ +++++ + aaia+ +a ely+l++l
  CCE31114.1 108 aeiespegsgtctptatdpsplkprtapltSIRHVKRVYSHPQAFGQCTAFLSSYLRDVEMLEVSSTSKAAEMASEDETGTSAAIATHLASELYKLDLL 206
                 *****************************999******************************************************************* PP

                 ECS-SS-S--EEEEEEEEET CS
         PDT 162 eeniedkknntTRFlvlake 181
                  enied+++ntTRFl+++++
  CCE31114.1 207 GENIEDREDNTTRFLIIGTN 226
                 *****************976 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.2e-08   0.00011       3      50 ..     249     295 ..     247     319 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.2e-08
                 EEEEEE.SSTTHHHHHHHHHHHTTSEEEEEEEEEESTT.ECEEEEEEEEE CS
         ACT   3 lrvgvp.DrPGlLarvfgaladrgiNidsieqrssedk.vagivfvvivv 50 
                 +++ vp   PG+La+v++ + + ++N +si++r+s    +     +++v+
  CCE31114.1 249 VSFTVPhTAPGALADVLSCFREFNLNMTSINSRPSLLApF---QYTFFVE 295
                 778888677**************************99742...3333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2538.08
//
Query:       CCE31115.1  [L=908]
Description: probable MAPKK kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-65  219.4   0.0    9.7e-65  218.5   0.0    1.4  1  Pkinase         Protein kinase domain
    2.7e-47  161.3   0.0    4.7e-47  160.5   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    6.1e-27   93.9   0.0    1.1e-26   93.0   0.0    1.5  1  Ras_bdg_2       Ras-binding domain of Byr2
    3.4e-15   55.9   0.3    7.8e-15   54.7   0.0    1.8  2  SAM_2           SAM domain (Sterile alpha motif)
    3.9e-14   53.1   0.0    7.5e-14   52.1   0.0    1.5  1  RA              Ras association (RalGDS/AF-6) domain
    6.5e-14   52.1   0.0    1.2e-13   51.3   0.0    1.5  1  SAM_1           SAM domain (Sterile alpha motif)
      2e-06   27.3   0.0    0.00026   20.4   0.0    2.2  2  Kinase-like     Kinase-like
      0.002   18.1   0.0     0.0039   17.1   0.0    1.4  1  SAM_PNT         Sterile alpha motif (SAM)/Pointed domain
     0.0062   16.5   0.0      0.014   15.4   0.0    1.5  1  SAM_4           SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
      0.063   12.1   0.0       0.15   10.8   0.0    1.5  1  Pkinase_fungal  Fungal protein kinase
      0.071   13.4   0.7       0.19   12.0   0.7    1.7  1  SAM_Ste50p      Ste50p, sterile alpha motif


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.5   0.0   5.9e-68   9.7e-65       3     264 .]     636     904 ..     634     904 .. 0.95

  Alignments for each domain:
  == domain 1  score: 218.5 bits;  conditional E-value: 5.9e-68
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.........HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke.........kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerk 92 
                 k   +G+GsfG+Vy a+++ tg+  AvK++++     + +         +++ +E+ +l+ l+hpniv+++++ +++d l ++leyv+gg+++++l+  
  CCE31115.1 636 KGALIGKGSFGSVYLALHAVTGELLAVKQVQTPAPGATGQsetrkrgmiEALKHEMGLLRDLRHPNIVQYLGCSSSSDFLNIFLEYVPGGSVQTMLNSY 734
                 5678***************************9876665555567789999999********************************************** PP

                 SS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.........BCTTTSCGGGS-HHHHTTSCBSHHHHHHH CS
     Pkinase  93 gslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.........ltsfvgtseYlAPEvlkeneyskkvDvWs 182
                 g+l+e  ++++++qil gl+ylH + iiHrD+K +NiL+d+kg +Ki+DFG++k+le+s+            s  g+  ++APEv+k++ey+ k+D+Ws
  CCE31115.1 735 GALPEPLVRSFVRQILMGLSYLHGRDIIHRDIKGANILVDNKGTIKISDFGISKKLEQSNIlgnaknnrhRPSLQGSVFWMAPEVVKQTEYTLKADIWS 833
                 **********************************************************988999999999999************************** PP

                 HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 183 lGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 lG++++e++tg++pf+          +++ql++i+ki g  +++   +++ s+ea+++l + ++ ++  R++a+el+ +p+l
  CCE31115.1 834 LGCLVVEMMTGNHPFP----------DCTQLQAIFKIGGG-TVSPTIPEHASNEAQSFLVQTFELNHDLRPSADELMLSPFL 904
                 ****************..........8999999***9875.7888899999**************************99986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   0.0   2.9e-50   4.7e-47       5     256 ..     638     899 ..     635     901 .. 0.86

  Alignments for each domain:
  == domain 1  score: 160.5 bits;  conditional E-value: 2.9e-50
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST..........TSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlke..........eateee..keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlk 90 
                    +G+G+fG+V+ +        + +  avK+++           + +  +   e+l +e+ ++++l+hpniv++lg+ ++++ l i +eyv+gG++++
   CCE31115.1 638 ALIGKGSFGSVYLALHA----VTGELLAVKQVQTpapgatgqseTRK--RgmIEALKHEMGLLRDLRHPNIVQYLGCSSSSDFLNIFLEYVPGGSVQT 729
                  579***********988....67777888887643333332211222..133688899**************************************** PP

                  HHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE......EETTSSTSGGGGS-HHHHHHSEE CS
  Pkinase_Tyr  91 fLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey......vkkeeaklpvkWmapEslkekkf 182
                  +L++    +l    + sf+ q+  G++yL+ ++++Hrd+   N+L++++ ++kisDfG+++++e+++        +++ + + +v WmapE++k++++
   CCE31115.1 730 MLNSY--GALPEPLVRSFVRQILMGLSYLHGRDIIHRDIKGANILVDNKGTIKISDFGISKKLEQSNILgnaknnRHRPSLQGSVFWMAPEVVKQTEY 825
                  ***98..99*****************************************************9665443432222666667789************** PP

                  EHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEE.S-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 183 tsksDvWsfGvllwEiftlgespypglkneevleklkegkr.lekpekcpeelyelmkkcweedpeeRptfselv 256
                  t k+D+Ws G l+ E++t g++p+p++++ +++ k+  g+   + pe++++e ++++ + +e + + Rp+  el+
   CCE31115.1 826 TLKADIWSLGCLVVEMMT-GNHPFPDCTQLQAIFKIGGGTVsPTIPEHASNEAQSFLVQTFELNHDLRPSADELM 899
                  ******************.*****************777762668************************998875 PP

>> Ras_bdg_2  Ras-binding domain of Byr2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   6.9e-30   1.1e-26       1      99 [.     250     351 ..     250     352 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 6.9e-30
   Ras_bdg_2   1 vvkfiledgstkkvnvsgcfnaeeikrkvlkklglkekeveeydvyvlss..nekeslrlLsdvELvtichspdrleknrlilvk.kneePtekalevs 96 
                 v+++i+++g tk+v++++c+++e+++r +l+k++l+e ++++y+++vl +  ++++++r+L d+EL++i+++++r+e+nrlil++  ++eP e +l+++
  CCE31115.1 250 VIRVIYTGGVTKVVKIADCTTCEDVMRVTLRKFALREAHERNYCFWVLAGvePDPSQCRRLGDTELWRIIQDQRRPERNRLILRRvPAAEPGEPELQRA 348
                 599**********************************************9999*********************************************9 PP

   Ras_bdg_2  97 kki 99 
                 ++i
  CCE31115.1 349 AAI 351
                 998 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   4.8e-18   7.8e-15       1      66 []      63     127 ..      63     127 .. 0.97
   2 ?   -2.7   0.0         4   6.5e+03      46      64 ..     783     801 ..     780     803 .. 0.82

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 4.8e-18
                 GGGHHHHHHHHHHHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHHHHHHH CS
       SAM_2   1 veswsledvaeWLrsiglkqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkkiqelk 66 
                 v  w+ ++v+e+Lr++++++y+ +Fr+++i g e ll++++e Lk++Gi +vg+r +++ +i++l+
  CCE31115.1  63 VRLWNEDRVCEYLRTVKCGDYETIFRNNHING-ENLLEMDKEVLKEMGIDKVGDRVRLFLCIKKLR 127
                 678*****************************.******************************985 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4
                 HTTHHHHHHHHHHHHHHHH CS
       SAM_2  46 rlGitsvghrkkilkkiqe 64 
                 ++Gi++  ++  il  +++
  CCE31115.1 783 DFGISKKLEQSNILGNAKN 801
                 7999999999999987776 PP

>> RA  Ras association (RalGDS/AF-6) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   4.6e-17   7.5e-14       2      91 ..     248     335 ..     247     337 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 4.6e-17
                 ECEEEEEETTT-TT..EEEEEEETTSBHHHHHHHHHHHCT-.GGGGCCEEEE...CCCTTTTEEEEE-TTSBCHHHHCCC-TTTSTCEEEEEEC CS
          RA   2 tgvlkVytedlkpgttyksikvsststaqeViealLekfgl.edspedyvLv...eskerggeerkLdddecplqiqlqwkkreeslrFvLrek 91 
                 + v++V+ + +     +k++k+  ++t+++V++ +L+kf l e ++++y+ +    ++ + +++r+L d+e +  iq q +++  ++r++Lr+ 
  CCE31115.1 248 QDVIRVIYTGGV----TKVVKIADCTTCEDVMRVTLRKFALrEAHERNYCFWvlaGVEPDPSQCRRLGDTELWRIIQDQRRPE--RNRLILRRV 335
                 679*********....**************************9999999999999*************************996..*******96 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   7.3e-17   1.2e-13       3      64 .]      66     127 ..      64     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 7.3e-17
                 TTHSSHHHHHHHTTSGGGHHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHHHHHHHHH CS
       SAM_1   3 wsvedVgeWLesiglgqYadlFrageidgdaLlllteddLeklgvtllGHrkkIlyaIqrLk 64 
                 w+ + V+e L+  ++g+Y+  Fr++ i+g+ Ll++++++L+++g+ ++G+r ++  +I++L+
  CCE31115.1  66 WNEDRVCEYLRTVKCGDYETIFRNNHINGENLLEMDKEVLKEMGIDKVGDRVRLFLCIKKLR 127
                 999********************************************************996 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.012        19      13      52 ..     633     672 ..     628     702 .. 0.80
   2 !   20.4   0.0   1.6e-07   0.00026     158     253 ..     754     851 ..     744     859 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.012
  Kinase-like  13 tlvrgellkkgdrsvvfevkdqetgeplavkvfllpseas 52 
                  + ++g l++kg ++ v+++    tge lavk+  +p+  +
   CCE31115.1 633 KWMKGALIGKGSFGSVYLALHAVTGELLAVKQVQTPAPGA 672
                  66899***************************99988444 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.6e-07
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrgg..ytrknktkmthkldaWqlGlviyriwclklPltla 253
                   +L+ + ++h +++  n+l d+kg +++ +f+   +  ++  l + ++    p l gs      +  ++t++t k d W lG  +  +   + P+   
   CCE31115.1 754 SYLHGRDIIHRDIKGANILVDNKGTIKISDFGISKKLEQSNILGNAKNNRHRPSLQGSVFWmaPEVVKQTEYTLKADIWSLGCLVVEMMTGNHPFPDC 851
                  689***********************************9999955555555567888855423445699**************999999888888655 PP

>> SAM_PNT  Sterile alpha motif (SAM)/Pointed domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.4e-06    0.0039      11      80 ..      57     126 ..      48     130 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.4e-06
                 TTSSSSGGG--HHHHHHHHHHHHHHTT-SS-HGGGCTS-HHHHHHS-HHHHHHHSCHCCHHH..HHHHHHHH CS
     SAM_PNT  11 laipadPqeWtkehVlewlewavkefdlakidfsefdmsGkeLcsltkeefleaapllaGdi..LyehLqnl 80 
                 ++ p   + W ++ V+e+l+ +vk  d + i  ++ +++G++L+++ ke ++e+  +++Gd   L+  +++l
  CCE31115.1  57 TEEPDSVRLWNEDRVCEYLR-TVKCGDYETIFRNN-HINGENLLEMDKEVLKEMGIDKVGDRvrLFLCIKKL 126
                 455557789**********6.78888998886666.***************999888888742255555555 PP

>> SAM_4  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.5e-06     0.014      27      65 ..      82     120 ..      76     133 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.5e-06
       SAM_4  27 nyavsfvdnriqknmlldlskeimnelgitvvgdiiail 65 
                 +y   f +n i+ + ll+++ke+++e+gi  vgd + ++
  CCE31115.1  82 DYETIFRNNHINGENLLEMDKEVLKEMGIDKVGDRVRLF 120
                 68899*****************************88765 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.2e-05      0.15     313     398 ..     747     832 ..     738     837 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.2e-05
  Pkinase_fungal 313 rDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga......rertGTleFmaievlkgeeHsyrhDLE 398
                     r+ + g+  L+    i+HrDi   Nil+      ++ +  ++D+ + k+l++ +   +a          G + +ma ev+k++e +   D+ 
      CCE31115.1 747 RQILMGLSYLH-GRDIIHRDIKGANILVD-----NKGTIKISDFGISKKLEQSNILGNAknnrhrPSLQGSVFWMAPEVVKQTEYTLKADIW 832
                     56677888999.99*************99.....45556666666666666432222112222237789************99998888875 PP

>> SAM_Ste50p  Ste50p, sterile alpha motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.7   0.00012      0.19       6      71 ..      66     127 ..      61     130 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
                 --HHHHHHHHHHHHSS-TTSCHHHHHHHTT--CCCHHHHHHHHHHHCTTS-HHHHHHHHHHHHHHH CS
  SAM_Ste50p   6 WstdevvkkvkaeLgleetdplilriRenditGsvLseltLqDCkeLcdddlkkaiklkllinklv 71 
                 W  d v+++ +++    + ++++   R+n+i+G+ L e+  +  ke+  d + + ++l l+i kl+
  CCE31115.1  66 WNEDRVCEYLRTV-KCGDYETIF---RNNHINGENLLEMDKEVLKEMGIDKVGDRVRLFLCIKKLR 127
                 8888888887764.566777775...9*************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (908 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.39
# Mc/sec: 6958.63
//
Query:       CCE31116.1  [L=221]
Description: uncharacterized protein CPUR_04967 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1636.09
//
Query:       CCE31117.1  [L=123]
Description: uncharacterized protein CPUR_04968 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 937.51
//
Query:       CCE31118.1  [L=132]
Description: uncharacterized protein CPUR_04969 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 972.77
//
Query:       CCE31119.1  [L=164]
Description: uncharacterized protein CPUR_04970 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.042   13.8   0.0      0.081   12.9   0.0    1.5  1  Slx4      Slx4 endonuclease
      0.064   13.6   0.1       0.12   12.7   0.1    1.4  1  YvfG      YvfG protein
       0.14   12.6   0.0       0.26   11.8   0.0    1.5  1  Gag_p19   Major core protein p19


Domain annotation for each model (and alignments):
>> Slx4  Slx4 endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.3e-05     0.081      23      58 ..     119     155 ..     112     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
                 -EEHHHHHHHHHHH-GGGG.GS-HHHHHHHHHHHT-- CS
        Slx4  23 PIvLedltawLnteglglk.evdpaelrewcdskgIc 58 
                 PI+ ++l+++ n+++   +  +++  + + c  +++c
  CCE31119.1 119 PINYQELATEINKGDTASEnYCSDLLVNAICAHQCVC 155
                 9*************885559***************** PP

>> YvfG  YvfG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   2.1e-05      0.12      20      36 ..      38      54 ..      32      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.1e-05
                SS.S-CCHHHHHHHHHH CS
        YvfG 20 eayedkiqalnaYYkvv 36
                ++yed i aln+YY + 
  CCE31119.1 38 RSYEDPIAALNSYYNST 54
                69************986 PP

>> Gag_p19  Major core protein p19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.3e-05      0.26      44      78 ..     103     135 ..      86     148 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.3e-05
     Gag_p19  44 hqlkkflklalktpvwlnpinysllasllpknypg 78 
                 h +  +  l+l+ pv l piny  la+ + k+   
  CCE31119.1 103 HLMSEY--LTLERPVQLPPINYQELATEINKGDTA 135
                 555555..5789*****************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1269.06
//
Query:       CCE31120.1  [L=218]
Description: related to emopamil-binding protein (phenylalkylamine Ca2+ antagonist binding protein) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-46  157.3  12.2    3.8e-46  156.8  12.2    1.2  1  EBP       Emopamil binding protein


Domain annotation for each model (and alignments):
>> EBP  Emopamil binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.8  12.2   2.1e-50   3.8e-46       2     178 .]      35     204 ..      31     204 .. 0.90

  Alignments for each domain:
  == domain 1  score: 156.8 bits;  conditional E-value: 2.1e-50
         EBP   2 llavlavllaalllskrllpksklkkdrllfiWfafdaliHlilEGsflyn..sffs..sqsllaqLwkeYakaDsRyltadltvvslelltvllagpl 96 
                 +++v av  +a++ ++rl+     + d+++++Wfa++         +fl++  +     +q+l+aqLwkeYa++DsRylt d+++v++e++tv+++gpl
  CCE31120.1  35 AAMVGAVTGLAYWQTSRLRL---RALDKWAAMWFALC---------YFLLHraA--IpqQQTLFAQLWKEYALSDSRYLTLDVFTVCIEFITVFVWGPL 119
                 56777888888888888843...3579********99.........66666332..222689************************************* PP

         EBP  97 allvvyaiakekplrhllqivlataelyGgvlyfatewle...gslnldtseplylwvYlvffNalWvviPllllvesvkeiaka 178
                 ++l+++ai++++p rh+ q++++ta+l+G++ly+ t+w +    +++++++e+ly+wvY+++fNa Wvv+P++ll++s k+iaka
  CCE31120.1 120 SWLTLFAILRDSPFRHVGQVIVCTAHLFGVALYYGTNWGDyraSGVSYSRPEVLYYWVYYAGFNAPWVVVPVVLLLDSSKNIAKA 204
                 **********99**************************9999999*************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1656.45
//
Query:       CCE31121.1  [L=910]
Description: uncharacterized protein CPUR_04972 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-05   22.2   0.7       0.14    9.9   0.6    2.4  2  Nup88     Nuclear pore component
     0.0016   17.6   0.2     0.0025   17.0   0.2    1.2  1  APG17     Autophagy protein Apg17
     0.0069   16.4   2.1     0.0069   16.4   2.1    2.4  2  DHR10     Designed helical repeat protein 10 domain


Domain annotation for each model (and alignments):
>> Nup88  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   2.9e-05      0.17      77     178 ..     117     214 ..      95     276 .. 0.79
   2 !    9.9   0.6   2.4e-05      0.14     530     639 ..     673     789 ..     638     794 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 2.9e-05
       Nup88  77 npplfevdrvlvsetgslvaLvGskGvvvlelPrRwGkksefeggkkkitCrtisvaerlFtsneslelrqvrWyPssvsdshLvlLtsdNtlrlYdlk 175
                  p+  +++++++s++++++a++ ++ v +  lP     +se     +  +   +++      +++s  +  + W+P  v+ s +v  t d  +rl++l+
  CCE31121.1 117 TPVADDIRQLVISPNSNYLAILTTHTVHICTLPDSSHLTSE---DTSPLRPTIYTLGPTTHVTSRS-PIMSALWHPLGVNGSCIVTVTADANIRLWELS 211
                 577889***************************86666554...3345666667777777777665.68899************************876 PP

       Nup88 176 epq 178
                  ++
  CCE31121.1 212 MQD 214
                 543 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 2.4e-05
       Nup88 530 clqllsratqvlReeylkkqelvreeiekrvkllkkqkeqqleelqsleeerksls......eraeklAe.kyeeikdkQeklvrrvkkvlkrlnsk.l 620
                 +lq+ + a +vl +e+     ++ +e+ +r +llk++ ++q +  ++++ + ++++      e+ e + e + +e+kd+Qe l  r++++ k + ++  
  CCE31121.1 673 TLQIFTDAHKVLSSETYS-LGVAVAELFRRCELLKSELDKQVRKANEVKGKIDTINgegrdgETEEDMYErRISEAKDRQERLNTRMENLRKMVGKAtS 770
                 578888888888888765.5667788999999999999999999999998888887333222334444442567***************9998865515 PP

       Nup88 621 pvlseaeremkkelekike 639
                  +ls+ e ++ +e++++ +
  CCE31121.1 771 RNLSNRETAFVEEVRSLGD 789
                 6899999999999998765 PP

>> APG17  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   4.1e-07    0.0025      15     114 ..     675     789 ..     672     796 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.1e-07
                 HHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHIIIIIIIII......IIIIIIIIHHHHHHHHHHHHHHHHHHHHHTSS-TTS.... CS
       APG17  15 tlcqrAnelltsarqeleea.vkllakteflrdglkqQlkllekirkslerkl......ekgkeefkdlikeldaanerLektlekLrktkvepsfrpe 106
                 ++ ++A+++l+s +++l  a ++l  ++e l + l++Q++ +++++ ++ +        e+ ++ +++ i+e ++++erL++ +e Lrk+  +++ r+ 
  CCE31121.1 675 QIFTDAHKVLSSETYSLGVAvAELFRRCELLKSELDKQVRKANEVKGKIDTINgegrdgETEEDMYERRISEAKDRQERLNTRMENLRKMVGKATSRNL 773
                 57789**************99999**********************99999888888889999999***********************9888877665 PP

                 ...........STGGG CS
       APG17 107 gee........ktLlD 114
                 +++        ++L D
  CCE31121.1 774 SNRetafveevRSLGD 789
                 5446667777766666 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   2.1   1.2e-06    0.0069      42     106 ..     699     763 ..     690     771 .. 0.88
   2 ?    0.6   0.3     0.096   5.7e+02      58      85 ..     881     908 ..     875     910 .] 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.2e-06
       DHR10  42 leeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekre 106
                    +e    +l+++ +k++e + ++++ + e r+ e++e++ +r+++ a+++ erl  ++e+ r+
  CCE31121.1 699 FRRCELLKSELDKQVRKANEVKGKIDTINGEGRDGETEEDMYERRISEAKDRQERLNTRMENLRK 763
                 55566666789999*********************************************998776 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.096
       DHR10  58 klkelrdaleekeielrelerkeerlqr 85 
                 kl++ + a+e  ++ ++ + +++erlq+
  CCE31121.1 881 KLQQVQGAIEREGALVEAVVARIERLQQ 908
                 8999999999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (910 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 6506.21
//
Query:       CCE31122.1  [L=178]
Description: probable nuclear cap binding protein subunit 2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-14   51.5   0.0    9.5e-14   51.0   0.0    1.2  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   5.3e-18   9.5e-14       1      70 []      55     125 ..      55     125 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 5.3e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 l+VgnL++++tee+++elFsk+G+ k++ +  d  ++++ gf+fVe+ ++ dA + ++   g+kl+ r+++
  CCE31122.1  55 LYVGNLSFYTTEEQVYELFSKCGELKRLVMGLDrFQKTPCGFCFVEYYTHQDALDGMKYIGGTKLDERVIR 125
                 8*********************************************************9999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1376.17
//
Query:       CCE31123.1  [L=110]
Description: probable ribosomal protein YmL31 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-43  146.8   1.3    2.6e-43  146.6   1.3    1.0  1  L31       Mitochondrial ribosomal protein L31


Domain annotation for each model (and alignments):
>> L31  Mitochondrial ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.6   1.3   1.4e-47   2.6e-43       2     102 .]      10     110 .]       9     110 .] 0.98

  Alignments for each domain:
  == domain 1  score: 146.6 bits;  conditional E-value: 1.4e-47
         L31   2 vllgGllwKipwrlsktqkarqrkRlkavDevieavkeslkkkgvslkalekakaelpkesemspkdKYtvFskkskgYRKsihkvpkwtklslrenpk 100
                 +l+g +lwKipwrls+ qk r+r Rl+avD+v+++v+++l+kkg+++++l+++ ae+p+e+em pkdKYt+Fs+++k YRK+ihk+pkwt++s+r np 
  CCE31123.1  10 PLSGSVLWKIPWRLSRFQKRRHRLRLRAVDNVVSTVQAALAKKGQKMESLDRWIAEMPTEAEMRPKDKYTLFSRNAKSYRKGIHKLPKWTRVSQRVNPP 108
                 6799**********************************************************************************************9 PP

         L31 101 gf 102
                 g+
  CCE31123.1 109 GY 110
                 87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 827.93
//
Query:       CCE31124.1  [L=163]
Description: related to sedlin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-42  142.4   0.0      1e-41  142.2   0.0    1.0  1  Sedlin_N  Sedlin, N-terminal conserved region
    0.00071   19.5   0.2      0.013   15.4   0.1    2.1  2  Sybindin  Sybindin-like family


Domain annotation for each model (and alignments):
>> Sedlin_N  Sedlin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2   0.0   1.1e-45     1e-41       1     131 []       7     161 ..       7     161 .. 0.98

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 1.1e-45
    Sedlin_N   1 iigkkdnplyelefssskekeeke......lkeLnqfilhasLDivedlqwktnnlylgkvdkfeklsvsayvtnskikflllhes............. 80 
                 i+g +dnpl+e ef +sk++ + +      l++Lnq ilh+sLDi e+ qw ++++yl+ +dk+ + ++s +vt ++ kflllh+              
  CCE31124.1   7 IVGAQDNPLFEYEFGTSKQGGDGQsrfndqLRHLNQLILHSSLDIAEEVQWAHGQMYLKVIDKLFNNYISCFVTGANAKFLLLHQPtmptstsssrsst 105
                 8******************999889999999******************************************************************** PP

    Sedlin_N  81 .....ssskkkdekikqffqevhelyvktlmnPFykvneeirSpaFdkkvkklakk 131
                      ++s+ ++e+ik ff+ev++++vk +mnPFyk n+e++Sp+F+++v+++++k
  CCE31124.1 106 aiganPTSPATEEAIKMFFTEVYDNWVKAIMNPFYKANMEVTSPVFKQRVAAAGRK 161
                 ***************************************************99876 PP

>> Sybindin  Sybindin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.015   1.4e+02      76      98 ..      74      96 ..       7     106 .. 0.69
   2 !   15.4   0.1   1.5e-06     0.013      95     137 ..     115     156 ..     106     161 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.015
    Sybindin 76 kLhclqtltGiKfvlitdtktna 98
                 ++c+ t +  Kf+l++++++ +
  CCE31124.1 74 YISCFVTGANAKFLLLHQPTMPT 96
                48899999999999999998754 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.5e-06
    Sybindin  95 ktnaeadsllrkiyelYsdyv..lknPfyslempircelFdeklk 137
                 +t+++   ++  + e+Y ++v  + nPfy+ +m +++ +F++++ 
  CCE31124.1 115 ATEEA---IKMFFTEVYDNWVkaIMNPFYKANMEVTSPVFKQRVA 156
                 44444...44455555555543366****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1242.60
//
Query:       CCE31125.1  [L=103]
Description: probable histone H4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-09   37.0   0.1    3.5e-09   36.8   0.1    1.2  1  CENP-T_C         Centromere kinetochore component CENP-T hist
    6.5e-06   26.5   0.3    7.6e-06   26.3   0.3    1.2  1  Histone          Core histone H2A/H2B/H3/H4
    3.8e-05   23.8   0.1    5.4e-05   23.3   0.1    1.3  1  TAF              TATA box binding protein associated factor (
     0.0001   22.5   0.1    0.00017   21.8   0.1    1.5  1  CBFD_NFYB_HMF    Histone-like transcription factor (CBF/NF-Y)
    0.00034   20.9   0.1    0.00049   20.4   0.1    1.4  1  CENP-S           CENP-S protein
     0.0055   16.8   0.0     0.0067   16.5   0.0    1.1  1  TFIID-31kDa      Transcription initiation factor IID, 31kD su
  ------ inclusion threshold ------
      0.047   13.7   0.0      0.055   13.5   0.0    1.3  1  Bromo_TP         Bromodomain associated
      0.055   13.4   0.0      0.061   13.3   0.0    1.1  1  HIGH_NTase1_ass  Cytidyltransferase-related C-terminal region


Domain annotation for each model (and alignments):
>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.1   1.5e-12   3.5e-09      16      79 ..      33      96 ..      18      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.5e-12
    CENP-T_C 16 lakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79
                 a r   ++g  +++++  ++   ++++ f+e v +D  +y++Ha+RKt+ + Dv+  +krq++
  CCE31125.1 33 PAIRRLARRGGVKRISAMIYEETRTVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96
                44444445567789************************************************86 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.3   3.4e-09   7.6e-06      77     129 ..      40      92 ..      16      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.4e-09
                 TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  77 sekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 +++  +risa+  +   ++l+ +l+ +  +A  +++haKR+T+t+ D+  A++
  CCE31125.1  40 RRGGVKRISAMIYEETRTVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALK 92 
                 4778899*****************************************99987 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   2.4e-08   5.4e-05       5      66 .]      31      92 ..      27      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.4e-08
                -HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  5 pkesvkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                +k +++ +A   G++ +s+   ++    ++  l  ++++a+ +++h+kR++ t+ Dv +AL+
  CCE31125.1 31 TKPAIRRLARRGGVKRISAMIYEETRTVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALK 92
                66778888888888888888888888888888999*************************98 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   7.6e-08   0.00017       7      65 .]      34      91 ..      28      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 7.6e-08
                   HHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  7 rvkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   +++++ +   ++++i+    e    ++++f+e + + A+ +++++krKt++  ++  A+
     CCE31125.1 34 AIRRLARRG-GVKRISAMIYEETRTVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYAL 91
                   578888888.8999999999999999****************************98876 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   2.2e-07   0.00049      42      73 ..      63      94 ..      21      97 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.2e-07
      CENP-S 42 lenlakDLeaFakHAkRstittdDvlLlaRrn 73
                le + +D  ++ +HAkR+t+t  Dv+  ++r+
  CCE31125.1 63 LEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                77788999*****************9998885 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     3e-06    0.0067      12      70 ..      36      94 ..      31     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3e-06
  TFIID-31kDa 12 hliLaslgvteyeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAiqsr 70
                 + + +  gv+ ++  +++    +   +   v++dA ++ ehak+k+v+  dv  A++ +
   CCE31125.1 36 RRLARRGGVKRISAMIYEETRTVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                 5566667888888888888888899999************************9998865 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.4e-05     0.055      33      70 ..      56      93 ..      27      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
                HHHHHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHH CS
    Bromo_TP 33 teiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70
                + +++++++ + ++a  + eha R ++t  Dvv +L++
  CCE31125.1 56 RTVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKR 93
                567889999999************************97 PP

>> HIGH_NTase1_ass  Cytidyltransferase-related C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.7e-05     0.061      69     109 ..      25      65 ..      11      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.7e-05
  HIGH_NTase1_ass  69 erieGvsGtkireavvegnlekvkdmlPeetievlkeelen 109
                      + i+G++   ir+    g +++++ m+ eet +vlk +le 
       CCE31125.1  25 DNIQGITKPAIRRLARRGGVKRISAMIYEETRTVLKTFLEG 65 
                      679*********************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 795.79
//
Query:       CCE31126.1  [L=101]
Description: uncharacterized protein CPUR_04977 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 752.67
//
Query:       CCE31127.1  [L=450]
Description: uncharacterized protein CPUR_04978 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-12   45.3   0.0    1.8e-11   43.9   0.0    1.6  1  Glyco_hydro_59   Glycosyl hydrolase family 59
    4.2e-11   42.9   1.8    1.1e-10   41.5   1.8    1.8  1  Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich d
    5.1e-07   29.6   0.3    3.1e-05   23.7   0.0    2.1  2  Glyco_hydr_30_2  O-Glycosyl hydrolase family 30
    1.3e-05   24.4   0.1    2.1e-05   23.7   0.1    1.3  1  Glyco_hydro_30   Glycosyl hydrolase family 30 TIM-barrel doma


Domain annotation for each model (and alignments):
>> Glyco_hydro_59  Glycosyl hydrolase family 59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   3.9e-15   1.8e-11      23     253 ..      26     304 ..      22     314 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 3.9e-15
  Glyco_hydro_59  23 qrseiLdyLFkpkfgaslqilkveiGgdanstsGtepshkrseeelad........verGyefwlakeAkkrnpdikldileWgaPgwlk..... 104
                     + s +Ld+LF+ + ga+++il+  iG   ns  G + s + ++    d         +   +f la+eA kr  + +l++ +W+aP+++k     
      CCE31127.1  26 NTSYVLDLLFDLDKGAGFTILRNAIGTSNNSLYGRMQSIEPTNPGSPDakpayvwdGSNTGQFPLAQEAYKRGLQ-RLYGNAWSAPSFMKtsgdd 119
                     45689*********************************99998888783444433333344678********987.8****************** PP

  Glyco_hydro_59 105 ............ksaekasektaeylkswlkgakktygldidyiag..............lrnekeydkdyvktlrkaLdkngykkvklvaad.. 171
                                   + ++ ++ a++l +w++   k+ g++++ + g              l n ++  +d +++l ++++++g+ ++kl+  d  
      CCE31127.1 120 iggslcgvtgaaCPTGNWIKAYADFLLQWVQFY-KQSGVKVTEL-GflnepeltttyvsmLSNGTQ-ASDVIRVLGPQIKSSGL-DLKLTCCDgv 210
                     ********9987557899************766.779*****99.945555555555554444333.55666666666666665.5788888866 PP

  Glyco_hydro_59 172 .eaatwsiakelakdse.lkdavdvvglHytteksssn.aealgkplwasEd..........lssknseeg.aldlarrinknyvkgkmtkyilw 252
                      ++++ + ++ l++ ++  +d +d++++H  +  s ++    + k++w++E           + ++n + g  +++a +i   yv+++++ +++w
      CCE31127.1 211 gWQHQKEKMDGLKAGPDpAEDHLDIITAHGYA--SAPTfMLDTTKKVWQTEWadlspsytpyTFWENGAMGeGMTWAANIQTAYVSANVSGFLYW 303
                     5444566667777766536889*******333..344456666699*****99999999998444455444599****************99999 PP

  Glyco_hydro_59 253 p 253
                      
      CCE31127.1 304 I 304
                     5 PP

>> Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   1.8   2.5e-14   1.1e-10       1      65 []     342     431 ..     342     431 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 2.5e-14
  Glyco_hydro_30C   1 GavRigtsgspsvssnvetvAFlnpDGsivvvilNrsessvtitvs............................dsskskgslsvparSivTv 65 
                      Ga Ri +++++s    v +++Fln+DGs++++i+N+++++v++++                             ++s++ ++ +vparS v++
       CCE31127.1 342 GARRINATSDDSL---VTVSSFLNTDGSLATQIINNATTAVNLDIAiggqvdrvrsmlpyltdnsndltvlpaiNVSRGRFTANVPARSLVSF 431
                      9******998655...********************99****99997788888888888888666666666666555599**********997 PP

>> Glyco_hydr_30_2  O-Glycosyl hydrolase family 30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   6.9e-09   3.1e-05      97     235 ..      77     217 ..      71     231 .. 0.78
   2 !    3.6   0.5    0.0095        43     300     364 ..     252     315 ..     229     317 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 6.9e-09
                      -B-TTSS.HHHHHHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SS....S-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-T-G CS
  Glyco_hydr_30_2  97 kydwtkq.eGqqWflkaakerGveefLgfsnsaPvqmtkngkavstkek....elnlkadkiddfadflvkvadkfrkegvkfdylsPvnePqW 185
                       y w+    Gq  + + a +rG+++  g + saP +m ++g  ++ +            + i+++adfl + ++ ++++gvk+  l  +neP  
       CCE31127.1  77 AYVWDGSnTGQFPLAQEAYKRGLQRLYGNAWSAPSFMKTSGDDIGGSLCgvtgAACPTGNWIKAYADFLLQWVQFYKQSGVKVTELGFLNEPEL 170
                      57777551566677789***********************99998654421223333456799*****************************99 PP

                      GG--...SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS- CS
  Glyco_hydr_30_2 186 dwge..gsqeGtpatnediaalvrkLseklsekklktkivlgeagqldyLyk 235
                      + +      +Gt     + ++++r+L  ++++++l+ k++  +   +++  +
       CCE31127.1 171 TTTYvsMLSNGT-----QASDVIRVLGPQIKSSGLDLKLTCCDGVGWQHQKE 217
                      888722334444.....45678999**********99999988887776555 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0095
                      --EEEE----S--.--TTT-SSSHHHHHHHHHHHHHHHHHHHHTS--SEEEEEESEES..SSSSS CS
  Glyco_hydr_30_2 300 klkyWqseyciLgdkegeingeardlsidlgLyvakvihnDLtlanasaWqWWlavsaydykDgl 364
                      + k+Wq+e++ L      ++   ++ ++  g+  a  i    + an+s + +W+  ++   + gl
       CCE31127.1 252 TKKVWQTEWADLSPSYTPYTFW-ENGAMGEGMTWAANIQTAYVSANVSGFLYWIGAETGPVNTGL 315
                      5689******999777777654.678999************************998876666666 PP

>> Glyco_hydro_30  Glycosyl hydrolase family 30 TIM-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   4.8e-09   2.1e-05      84     207 ..      91     210 ..      77     311 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 4.8e-09
                     HHHHHHH-SS-EEEEEES---GGGBTTSSSSSS-BBSS-TT.....SHHHHHHHHHHHHHHHHHHHTT--ESEEESSSSGGGGGSTT-SSS--B- CS
  Glyco_hydro_30  84 ikraqkynqdlkllaapwaapgwlkttkavkGkGalkGkag.....diyhkayakyfvkfleeyaksklsfwglsteneptaGsdkktklqslgf 173
                      ++a k     +l+   w+ap+++kt+++  G G+l G +g      ++ kaya +++++++ y++s+++   l   nep + +       s++ 
      CCE31127.1  91 AQEAYKRGL-QRLYGNAWSAPSFMKTSGDDIG-GSLCGVTGaacptGNWIKAYADFLLQWVQFYKQSGVKVTELGFLNEPELTTT----YVSMLS 179
                     455544332.479999***********99877.66766544111226899******************************98654....445554 PP

                     -HHHHHHHHHHTHHHHHHTSTT.TTSEEEEEEEE CS
  Glyco_hydro_30 174 taetqrdfikrdlGpalaassagknvkllilddn 207
                        +  d i r lGp +++s    ++kl   d  
      CCE31127.1 180 NGTQASDVI-RVLGPQIKSSGL--DLKLTCCDGV 210
                     444455655.679**9998855..8888777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3505.81
//
Query:       CCE31128.1  [L=851]
Description: related to nuclear protein bimA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-33  112.1  26.3      1e-06   28.3   0.0    9.0  9  TPR_1      Tetratricopeptide repeat
    7.1e-28   96.7  25.2    6.5e-22   77.6   0.5    5.3  5  ANAPC3     Anaphase-promoting complex, cyclosome, subunit 3
    2.1e-24   83.6  38.6    1.5e-05   24.7   0.1   10.4 10  TPR_2      Tetratricopeptide repeat
    3.8e-21   75.4  30.1      1e-08   35.6   3.9    7.8  7  TPR_16     Tetratricopeptide repeat
      7e-18   63.8  22.5      0.017   15.9   0.2   10.5 11  TPR_14     Tetratricopeptide repeat
    1.5e-17   63.8  21.9    6.3e-05   23.4   4.1    6.7  6  TPR_19     Tetratricopeptide repeat
    7.4e-17   61.4  22.8     0.0092   16.2   0.7    8.3  7  TPR_12     Tetratricopeptide repeat
    1.9e-16   58.8  24.9      0.037   14.2   0.6   10.0 10  TPR_8      Tetratricopeptide repeat
    9.7e-15   53.5  11.8      0.013   15.5   0.0    7.3  7  TPR_7      Tetratricopeptide repeat
    2.1e-14   52.8  22.6      0.046   14.1   0.0    9.8 10  TPR_17     Tetratricopeptide repeat
    3.9e-12   45.7  24.1    1.6e-05   24.5   1.4    8.3  9  TPR_11     TPR repeat
    7.9e-07   29.3  27.2        1.9    9.3   0.2    9.5  8  TPR_6      Tetratricopeptide repeat
    1.5e-06   28.3  16.9     0.0055   16.8   0.8    6.5  7  TPR_9      Tetratricopeptide repeat
    1.1e-05   24.8  14.8       0.45    9.7   1.9    4.9  4  TPR_15     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.039   13.7   1.9        6.4    6.4   0.4    3.5  3  DUF2225    Uncharacterized protein conserved in bacteria (DUF
        0.1   13.3   4.6         17    6.4   0.1    5.2  3  TPR_4      Tetratricopeptide repeat
       0.31   11.2   2.3        6.5    6.9   0.0    3.0  3  Muraidase  N-acetylmuramidase
       0.63    9.8   3.4        1.2    8.9   2.3    2.1  2  DUF5113    Domain of unknown function (DUF5113)


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   1.9e-06    0.0019       1      32 [.     127     158 ..     127     160 .. 0.95
   2 !   10.6   0.0   0.00039      0.38       2      26 ..     558     582 ..     557     588 .. 0.93
   3 !   28.3   0.0     1e-09     1e-06       2      33 ..     626     657 ..     625     658 .. 0.96
   4 !   14.6   0.2   2.2e-05     0.021       1      32 [.     659     690 ..     659     692 .. 0.89
   5 !   24.5   2.6   1.6e-08   1.6e-05       2      34 .]     694     726 ..     693     726 .. 0.97
   6 !   13.4   0.1   5.2e-05     0.052       5      33 ..     731     759 ..     727     760 .. 0.91
   7 ?   -0.9   0.1       1.7   1.7e+03       1      20 [.     761     780 ..     761     782 .. 0.81
   8 !   13.3   0.0   5.5e-05     0.055       2      33 ..     796     827 ..     795     828 .. 0.94
   9 ?   -2.5   0.0       5.3   5.3e+03      17      25 ..     832     840 ..     831     840 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnP 32 
                 a +l+ lG +y   g+ ++A+ ++e AL+ nP
  CCE31128.1 127 AAVLCLLGKLYNGYGEKKKAVSCFEDALKKNP 158
                 6789***************************9 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00039
                 HHHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyek 26 
                  +l ++G +y+++  y eA++++++
  CCE31128.1 558 WVLSQMGRCYYEQASYAEAEKFFRR 582
                 57899******************97 PP

  == domain 3  score: 28.3 bits;  conditional E-value: 1e-09
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 +a++ lGna     ++++Al ++++A +lnP+
  CCE31128.1 626 QAWCALGNAWSLARDPEQALRCFKRATQLNPK 657
                 7******************************7 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnP 32 
                 a+a+   G+ +  +++y++Al +y++A+  + 
  CCE31128.1 659 AYAFTLQGHEHVVNEEYEKALTAYRQAIAADR 690
                 68899999********************8775 PP

  == domain 5  score: 24.5 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 +a+y++G +  +lg yd+A ++y  A ++nPnn
  CCE31128.1 694 NAYYGIGRVQERLGAYDKAYDHYYAAQTINPNN 726
                 79******************************8 PP

  == domain 6  score: 13.4 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnPn 33 
                 + +G ++ k+++   Al +y+kA el P+
  CCE31128.1 731 CCMGGVLEKQKQMVLALHAYSKAAELAPK 759
                 6688899********************96 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHTT-HHHH CS
       TPR_1   1 akalynlGnayfklgkydeA 20 
                 a++ y ++ a++ lg+ + A
  CCE31128.1 761 AQTRYKKARALLTLGQVEAA 780
                 56778899999999999988 PP

  == domain 8  score: 13.3 bits;  conditional E-value: 5.5e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                  +++ lG +y++ ++ + A+ ++  AL l+P+
  CCE31128.1 796 TVHFLLGTLYRNTNERQLAVRHFTIALALDPK 827
                 6899***************************6 PP

  == domain 9  score: -2.5 bits;  conditional E-value: 5.3
                 HHHHHHHHH CS
       TPR_1  17 ydeAleyye 25 
                  +eA+e +e
  CCE31128.1 832 IKEAIESFE 840
                 689***997 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.5   6.5e-25   6.5e-22       1      81 [.      21     101 ..      21     102 .. 0.97
   2 !    7.1   0.1    0.0063       6.3      27      52 ..     561     587 ..     535     609 .. 0.64
   3 ?    2.7   0.1      0.15   1.5e+02       7      54 ..     609     657 ..     603     665 .. 0.84
   4 !   11.5   4.1   0.00027      0.27       8      79 ..     644     716 ..     640     719 .. 0.87
   5 !   12.3   2.1   0.00015      0.15      14      75 ..     715     780 ..     713     785 .. 0.90

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 6.5e-25
                 HTT-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   1 dqnnyknAiflaerllaaetespedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 d+  y+nA+f+aer +a++++ +++ayl+Alc++++g+  +Ay++++ ++ ++ +lgc+ +fAq++l L+ky ++i aLek
  CCE31128.1  21 DNASYDNALFFAERFVAQDPKASDSAYLYALCHLRLGDSRSAYDVAKALGGRGANLGCAWIFAQACLTLEKYRDGIGALEK 101
                 5789***************************************************************************98 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0063
                 HHHHHHHHHTT-HHHHHHHHHCT.SHH CS
      ANAPC3  27 yllAlclylngqykrAyellrka.kln 52 
                    + c+y++  y +A +++r++  ++
  CCE31128.1 561 SQMGRCYYEQASYAEAEKFFRRMrVQA 587
                 445778888888888888888774444 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.15
                 HHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC CS
      ANAPC3   7 nAiflaerllaaetespedayllAlclylngqykrAyellrka.klnsk 54 
                 +  fla  l  ++ +sp++  +l+ +  l+ + ++A++ +++a +ln+k
  CCE31128.1 609 DLSFLAHELIDSSWYSPQAWCALGNAWSLARDPEQALRCFKRAtQLNPK 657
                 567999999999999****************************666554 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00027
                 HHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3   8 AiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79 
                 A+ ++ r+ + +++ +++  l +  +  n++y++A++ +r+a   + ++ ++ y +++++  L+ y++A++++
  CCE31128.1 644 ALRCFKRATQLNPKLAYAFTLQGHEHVVNEEYEKALTAYRQAiAADRRHYNAYYGIGRVQERLGAYDKAYDHY 716
                 666777777677777777777799999*******************************************986 PP

  == domain 5  score: 12.3 bits;  conditional E-value: 0.00015
                 HHH.HHH--HHHHHHH...HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHH CS
      ANAPC3  14 rllaaetespedayll...AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeA 75 
                  ++aa+t +p++a l    + +l +++q   A++ ++ka +l++k  + ry +A++ll L+++e A
  CCE31128.1 715 HYYAAQTINPNNAVLIccmGGVLEKQKQMVLALHAYSKAaELAPKAAQTRYKKARALLTLGQVEAA 780
                 57889999999999966669*****************************************99877 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1         4     4e+03      17      33 ..      25      41 ..      19      42 .. 0.89
   2 ?    0.4   0.1      0.96   9.5e+02       5      20 ..      47      62 ..      43      68 .. 0.81
   3 !   11.4   0.1   0.00029      0.29       1      32 [.     127     158 ..     127     159 .. 0.93
   4 !   13.0   0.0   8.8e-05     0.088       3      27 ..     559     583 ..     557     589 .. 0.87
   5 !   24.7   0.1   1.5e-08   1.5e-05       1      33 [.     625     657 ..     625     658 .. 0.96
   6 !   12.1   0.5   0.00017      0.17       2      33 ..     660     691 ..     659     692 .. 0.84
   7 !   14.0   1.6   4.1e-05     0.041       2      34 .]     694     726 ..     693     726 .. 0.96
   8 !    9.9   0.0   0.00087      0.87       6      33 ..     732     759 ..     727     760 .. 0.90
   9 ?    1.7   0.1      0.36   3.6e+02       5      23 ..     765     783 ..     761     793 .. 0.78
  10 !   17.1   0.0   4.3e-06    0.0043       1      33 [.     795     827 ..     795     828 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4
       TPR_2 17 yeeAleafekAleldPn 33
                y+ Al + e+ ++ dP+
  CCE31128.1 25 YDNALFFAERFVAQDPK 41
                999********999997 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.96
       TPR_2  5 ynlGlayyklgdyeeA 20
                y  +l++++lgd   A
  CCE31128.1 47 YLYALCHLRLGDSRSA 62
                8899*******97776 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00029
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                 a +l+ lG++y   g+ ++A+ +fe Al+ +P
  CCE31128.1 127 AAVLCLLGKLYNGYGEKKKAVSCFEDALKKNP 158
                 56889999999999*****************9 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 8.8e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekA 27 
                 +l ++G++yy++  y+eA+++f++ 
  CCE31128.1 559 VLSQMGRCYYEQASYAEAEKFFRRM 583
                 6889******************985 PP

  == domain 5  score: 24.7 bits;  conditional E-value: 1.5e-08
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 ++a+++lG+a+  + d+e+Al++f++A +l+P+
  CCE31128.1 625 PQAWCALGNAWSLARDPEQALRCFKRATQLNPK 657
                 579*****************************7 PP

  == domain 6  score: 12.1 bits;  conditional E-value: 0.00017
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +a   +G  +  + +ye+Al a+++A++ d +
  CCE31128.1 660 YAFTLQGHEHVVNEEYEKALTAYRQAIAADRR 691
                 56667788888999*************98865 PP

  == domain 7  score: 14.0 bits;  conditional E-value: 4.1e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                  a+y +G++ ++lg y++A +++ +A  ++Pnn
  CCE31128.1 694 NAYYGIGRVQERLGAYDKAYDHYYAAQTINPNN 726
                 59*****************************98 PP

  == domain 8  score: 9.9 bits;  conditional E-value: 0.00087
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPn 33 
                 ++G +++k+++   Al+a+ kA el+P+
  CCE31128.1 732 CMGGVLEKQKQMVLALHAYSKAAELAPK 759
                 688899*********************7 PP

  == domain 9  score: 1.7 bits;  conditional E-value: 0.36
       TPR_2   5 ynlGlayyklgdyeeAlea 23 
                 y  ++a++ lg+ e A + 
  CCE31128.1 765 YKKARALLTLGQVEAAQKE 783
                 7889999999999999876 PP

  == domain 10  score: 17.1 bits;  conditional E-value: 4.3e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a +++ lG +y++ ++ + A+++f  Al+ldP+
  CCE31128.1 795 ATVHFLLGTLYRNTNERQLAVRHFTIALALDPK 827
                 568*****************************7 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.7   0.00014      0.14       5      50 ..      17      59 ..      14      70 .. 0.84
   2 ?    2.5   0.0      0.23   2.3e+02      15      36 ..     145     163 ..     120     168 .. 0.83
   3 !    9.3   0.0    0.0018       1.8      41      66 ..     564     589 ..     563     590 .. 0.93
   4 ?    5.3   0.1     0.031        31      10      34 ..     638     659 ..     629     662 .. 0.87
   5 !   35.6   3.9   1.1e-11     1e-08       3      67 ..     665     726 ..     663     727 .. 0.96
   6 !   11.9   4.3   0.00027      0.27       4      53 ..     734     780 ..     733     795 .. 0.84
   7 !   19.9   0.4   8.5e-07   0.00084       1      67 [.     765     828 ..     765     829 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00014
      TPR_16  5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrl 50
                ++++++  yd A+  +e+++++d   P a ++++l+++++lr+g+ 
  CCE31128.1 17 HYHIDNASYDNALFFAERFVAQD---PKASDSAYLYALCHLRLGDS 59
                6677777788888778*******...*****************996 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.23
      TPR_16  15 dAaaaleaalkrdpssPdaaeA 36 
                 +A+  +e alk++   P+ ++A
  CCE31128.1 145 KAVSCFEDALKKN---PFMWDA 163
                 6889999999999...988877 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0018
      TPR_16  41 gdaalrqgrlaeAaalyraalraapd 66 
                 g+++++q  +aeA+ ++r++  +ap+
  CCE31128.1 564 GRCYYEQASYAEAEKFFRRMRVQAPS 589
                 89******************999885 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.031
      TPR_16  10 agdyddAaaaleaalkrdpssPdaa 34 
                 a+d+++A++ +++a+ ++   P  a
  CCE31128.1 638 ARDPEQALRCFKRATQLN---PKLA 659
                 689**************9...7765 PP

  == domain 5  score: 35.6 bits;  conditional E-value: 1.1e-11
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 ++++++ + +y++A+ a+++a+++d    +++ A+++ g++  r+g +++A + y aa++  p++
  CCE31128.1 665 QGHEHVVNEEYEKALTAYRQAIAAD---RRHYNAYYGIGRVQERLGAYDKAYDHYYAAQTINPNN 726
                 89***********************...*******************************999987 PP

  == domain 6  score: 11.9 bits;  conditional E-value: 0.00027
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53 
                 +  + ++++   A++a+  a +++   P aa+ ++ +++a+l +g +++A
  CCE31128.1 734 GGVLEKQKQMVLALHAYSKAAELA---PKAAQTRYKKARALLTLGQVEAA 780
                 566788999999************...*********************99 PP

  == domain 7  score: 19.9 bits;  conditional E-value: 8.5e-07
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 +++ara+l +g+ ++A++ l ++ +++   Pd a  ++llg ++   ++ ++A+  +  al+ +p+a
  CCE31128.1 765 YKKARALLTLGQVEAAQKELMILKDLA---PDEATVHFLLGTLYRNTNERQLAVRHFTIALALDPKA 828
                 789*****************9999999...********************************99975 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1      0.11   1.1e+02       3      40 ..      11      48 ..      10      52 .. 0.80
   2 ?    1.4   0.1      0.78   7.8e+02       4      26 ..      46      68 ..      43      69 .. 0.86
   3 ?   -1.5   0.0       6.5   6.5e+03       8      26 ..      83     101 ..      80     105 .. 0.90
   4 !    9.3   0.0    0.0023       2.3       6      42 ..     132     168 ..     124     170 .. 0.84
   5 !    9.8   0.0    0.0015       1.5       1      34 [.     557     590 ..     557     599 .. 0.90
   6 !   15.9   0.2   1.7e-05     0.017       1      36 [.     625     660 ..     625     667 .. 0.90
   7 ?    3.7   0.4      0.14   1.4e+02      14      32 ..     672     690 ..     664     697 .. 0.82
   8 !   14.2   0.0     6e-05      0.06       2      38 ..     694     730 ..     693     737 .. 0.91
   9 ?    2.9   0.1      0.26   2.6e+02       7      43 ..     733     769 ..     731     770 .. 0.86
  10 !   11.7   0.3   0.00038      0.38       3      43 ..     763     803 ..     761     804 .. 0.93
  11 ?    2.5   0.0      0.33   3.3e+02       7      33 ..     801     827 ..     799     835 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.11
      TPR_14  3 allalaeallalGdpdeAiallrralalaPddaeawll 40
                +l+++ +++  +  +d A+  ++r +a++P+  +  +l
  CCE31128.1 11 LLRQIIHYHIDNASYDNALFFAERFVAQDPKASDSAYL 48
                56788999999*******************86543333 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.78
      TPR_14  4 llalaeallalGdpdeAiallrr 26
                 +++a  +l+lGd + A +++++
  CCE31128.1 46 AYLYALCHLRLGDSRSAYDVAKA 68
                57899999*********999886 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 6.5
      TPR_14   8 aeallalGdpdeAiallrr 26 
                 a+a+l+l+++++ i +l++
  CCE31128.1  83 AQACLTLEKYRDGIGALEK 101
                 8999***********9997 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0023
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawllla 42 
                 +l++++   G+ ++A+ ++++al+++P  ++a ++l 
  CCE31128.1 132 LLGKLYNGYGEKKKAVSCFEDALKKNPFMWDAFTALC 168
                 56899999*******************8888877775 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.0015
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPdd 34 
                 p++l ++++ ++++  ++eA++ +rr+  +aP+ 
  CCE31128.1 557 PWVLSQMGRCYYEQASYAEAEKFFRRMRVQAPSR 590
                 678899*************************976 PP

  == domain 6  score: 15.9 bits;  conditional E-value: 1.7e-05
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPddae 36 
                 p+a+ al+ a   ++dp++A+++++ra +l+P+ a 
  CCE31128.1 625 PQAWCALGNAWSLARDPEQALRCFKRATQLNPKLAY 660
                 689*****************************9765 PP

  == domain 7  score: 3.7 bits;  conditional E-value: 0.14
      TPR_14  14 lGdpdeAiallrralalaP 32 
                 ++++++A++++r+a+a++ 
  CCE31128.1 672 NEEYEKALTAYRQAIAADR 690
                 5799***********9875 PP

  == domain 8  score: 14.2 bits;  conditional E-value: 6e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeaw 38 
                 +a++ ++++ ++lG +d+A +++ +a   +P++a++ 
  CCE31128.1 694 NAYYGIGRVQERLGAYDKAYDHYYAAQTINPNNAVLI 730
                 58999****************************9875 PP

  == domain 9  score: 2.9 bits;  conditional E-value: 0.26
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++ +l+ + +   A+ ++ +a +laP+ a++++  a+
  CCE31128.1 733 MGGVLEKQKQMVLALHAYSKAAELAPKAAQTRYKKAR 769
                 5677888888888999**************9999987 PP

  == domain 10  score: 11.7 bits;  conditional E-value: 0.00038
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                  +++ a+all+lG+ ++A + l  + +laPd+a++++ll+ 
  CCE31128.1 763 TRYKKARALLTLGQVEAAQKELMILKDLAPDEATVHFLLGT 803
                 68999*********************************986 PP

  == domain 11  score: 2.5 bits;  conditional E-value: 0.33
      TPR_14   7 laeallalGdpdeAiallrralalaPd 33 
                 l+ ++++  + + A++++  alal+P+
  CCE31128.1 801 LGTLYRNTNERQLAVRHFTIALALDPK 827
                 78899999*****************98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   1.1e-05     0.011       3      51 ..      21      69 ..      19      75 .. 0.88
   2 ?    2.7   0.0      0.19   1.9e+02      20      56 ..     122     158 ..     118     167 .. 0.90
   3 !    9.7   0.0    0.0012       1.2       9      57 ..     541     589 ..     534     599 .. 0.86
   4 ?    4.3   0.0     0.057        56      32      65 ..     632     665 ..     620     667 .. 0.64
   5 !   13.9   1.6   5.8e-05     0.057       5      46 ..     673     714 ..     671     729 .. 0.88
   6 !   23.4   4.1   6.3e-08   6.3e-05       4      64 ..     740     800 ..     737     804 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-05
      TPR_19  3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdal 51
                ++  y++Al + e+  ++dpk ++ ++l+A ++l lg+   A ++ +al
  CCE31128.1 21 DNASYDNALFFAERFVAQDPKASDSAYLYALCHLRLGDSRSAYDVAKAL 69
                5668*********************************988887776665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.19
      TPR_19  20 edpknaearllLAeallalgqldeAealLdalpeedp 56 
                   p++a+++ lL +++   g+ ++A  + +++++++p
  CCE31128.1 122 GHPDSAAVLCLLGKLYNGYGEKKKAVSCFEDALKKNP 158
                 5799999999*******************99999987 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0012
      TPR_19   9 eAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 +Al+++ ++ ++    ++++ ++ ++++++  ++eAe+   +   ++p 
  CCE31128.1 541 DALQAFGSLPAAQQTTPWVLSQMGRCYYEQASYAEAEKFFRRMRVQAPS 589
                 78888888878888899999******************99988777765 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.057
      TPR_19  32 AeallalgqldeAealLdalpeedpddaryasLl 65 
                  +a   + ++++A ++ +++ + +p+ a++ +L+
  CCE31128.1 632 GNAWSLARDPEQALRCFKRATQLNPKLAYAFTLQ 665
                 5555556666666666666666666666666665 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 5.8e-05
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                 + y+ Al +++qa+++d  + +a ++  +++  lg +d+A +
  CCE31128.1 673 EEYEKALTAYRQAIAADRRHYNAYYGIGRVQERLGAYDKAYD 714
                 689************************************965 PP

  == domain 6  score: 23.4 bits;  conditional E-value: 6.3e-08
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasL 64 
                 +++   Al ++++a + +pk a  r+  A+all lgq+++A++ L  l + +pd+a ++ L
  CCE31128.1 740 QKQMVLALHAYSKAAELAPKAAQTRYKKARALLTLGQVEAAQKELMILKDLAPDEATVHFL 800
                 6677789***********************************************9999855 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.36   3.6e+02      39      64 ..      37      62 ..      24      67 .. 0.81
   2 !   13.6   0.0   6.1e-05      0.06      40      73 ..     122     155 ..      76     156 .. 0.94
   3 !   12.1   0.1   0.00019      0.19      43      70 ..     555     582 ..     538     583 .. 0.77
   4 ?    4.1   0.0     0.055        55      49      74 ..     629     654 ..     624     657 .. 0.78
   5 !    9.7   5.2     0.001         1      26      69 ..     675     717 ..     671     725 .. 0.76
   6 !   16.2   0.7   9.3e-06    0.0092       7      59 ..     731     782 ..     726     784 .. 0.87
   7 !    7.9   0.0    0.0038       3.8      42      76 ..     792     826 ..     786     827 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.36
      TPR_12 39 pdhpltattlrnLgrlyralgryeeA 64
                 + p ++ + + ++ ++++lg+ + A
  CCE31128.1 37 AQDPKASDSAYLYALCHLRLGDSRSA 62
                56788889999999999999999887 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.1e-05
      TPR_12  40 dhpltattlrnLgrlyralgryeeAlelleeala 73 
                  hp+ a++l+ Lg ly   g+ ++A++ +e+al+
  CCE31128.1 122 GHPDSAAVLCLLGKLYNGYGEKKKAVSCFEDALK 155
                 69******************************95 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00019
      TPR_12  43 ltattlrnLgrlyralgryeeAlellee 70 
                  t ++l  +gr+y+++  y+eA++++++
  CCE31128.1 555 TTPWVLSQMGRCYYEQASYAEAEKFFRR 582
                 6779999*****************9987 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.055
      TPR_12  49 rnLgrlyralgryeeAlelleealai 74 
                 ++Lg + +++ ++e+Al+ +++a+++
  CCE31128.1 629 CALGNAWSLARDPEQALRCFKRATQL 654
                 56777767788999999999999987 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.001
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 +ekal ++r++   d+    ++++++gr++++lg y++A +++ 
  CCE31128.1 675 YEKALTAYRQAIAADR-RHYNAYYGIGRVQERLGAYDKAYDHYY 717
                 6666666666666665.55679*****************88885 PP

  == domain 6  score: 16.2 bits;  conditional E-value: 9.3e-06
      TPR_12   7 nnlaavlrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralg 59 
                   ++ vl +++++  Al  + ka e+a +++   +++  a++l +Lg++  a++
  CCE31128.1 731 CCMGGVLEKQKQMVLALHAYSKAAELApKAA--QTRYKKARALLTLGQVEAAQK 782
                 369************************7777..77889***********98875 PP

  == domain 7  score: 7.9 bits;  conditional E-value: 0.0038
      TPR_12  42 pltattlrnLgrlyralgryeeAlelleealaiae 76 
                 p++at+ + Lg+lyr +++ + A+++++ ala+++
  CCE31128.1 792 PDEATVHFLLGTLYRNTNERQLAVRHFTIALALDP 826
                 789************************99999875 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.88   8.8e+02       3      20 ..      45      62 ..      43      68 .. 0.85
   2 !   13.2   0.1     8e-05     0.079       2      29 ..     128     155 ..     127     159 .. 0.91
   3 ?    5.2   0.1     0.029        28       6      26 ..     562     582 ..     559     582 .. 0.90
   4 !   10.4   0.0   0.00061      0.61       2      33 ..     626     657 ..     625     658 .. 0.95
   5 !    7.2   0.1    0.0066       6.6       8      33 ..     666     691 ..     659     692 .. 0.78
   6 !   14.2   0.6   3.7e-05     0.037       2      34 .]     694     726 ..     693     726 .. 0.96
   7 ?    1.1   0.0       0.6     6e+02      10      33 ..     736     759 ..     733     759 .. 0.84
   8 !    8.0   0.1    0.0037       3.7       1      25 [.     761     785 ..     761     794 .. 0.83
   9 !    7.5   0.0    0.0053       5.3       2      33 ..     796     827 ..     795     827 .. 0.93
  10 ?   -2.2   0.1       7.1   7.1e+03      17      25 ..     832     840 ..     831     841 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.88
                HHHHHHHHHHHTT-HHHH CS
       TPR_8  3 ayynlgsiylklgdyeeA 20
                + y+ ++++l lgd  +A
  CCE31128.1 45 SAYLYALCHLRLGDSRSA 62
                66999*********9988 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 8e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                  ++++lg++y   g++++A++++e al+
  CCE31128.1 128 AVLCLLGKLYNGYGEKKKAVSCFEDALK 155
                 689***********************98 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.029
                 HHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyek 26 
                 ++g++y ++  y eA++++++
  CCE31128.1 562 QMGRCYYEQASYAEAEKFFRR 582
                 78*****************85 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00061
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +a++ lg++ +   d e+A  ++++a++l+p+
  CCE31128.1 626 QAWCALGNAWSLARDPEQALRCFKRATQLNPK 657
                 79*****************************7 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.0066
                 HHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldpd 33 
                 g+ +   ++ye+A  +y++a+ +d+ 
  CCE31128.1 666 GHEHVVNEEYEKALTAYRQAIAADRR 691
                 555555689************99975 PP

  == domain 6  score: 14.2 bits;  conditional E-value: 3.7e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                  ayy +g++ + lg y++A   y  a +++p+n
  CCE31128.1 694 NAYYGIGRVQERLGAYDKAYDHYYAAQTINPNN 726
                 69*****************************97 PP

  == domain 7  score: 1.1 bits;  conditional E-value: 0.6
                 HHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  10 iylklgdyeeAkeyyekaleldpd 33 
                 +++k++++  A  +y ka el+p+
  CCE31128.1 736 VLEKQKQMVLALHAYSKAAELAPK 759
                 5677888888999*********96 PP

  == domain 8  score: 8.0 bits;  conditional E-value: 0.0037
                 CCHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyye 25 
                 a+  y++++++l+lg+ e+A++ ++
  CCE31128.1 761 AQTRYKKARALLTLGQVEAAQKELM 785
                 5788*****************9887 PP

  == domain 9  score: 7.5 bits;  conditional E-value: 0.0053
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                  ++++lg +y+++++ + A+  +  al ldp+
  CCE31128.1 796 TVHFLLGTLYRNTNERQLAVRHFTIALALDPK 827
                 6899***********************99996 PP

  == domain 10  score: -2.2 bits;  conditional E-value: 7.1
                 HHHHHHHHH CS
       TPR_8  17 yeeAkeyye 25 
                 ++eA+e++e
  CCE31128.1 832 IKEAIESFE 840
                 689****98 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       9.5   9.4e+03       7      18 ..      51      62 ..      50      66 .. 0.77
   2 !    7.2   0.0    0.0058       5.8       2      32 ..     130     158 ..     129     159 .. 0.89
   3 ?    6.1   0.1     0.013        12       2      24 ..     560     582 ..     559     595 .. 0.91
   4 !   15.5   0.0   1.3e-05     0.013       1      28 [.     627     652 ..     627     659 .. 0.91
   5 ?    6.0   0.5     0.014        14      14      31 ..     674     689 ..     672     694 .. 0.80
   6 !    7.2   0.3    0.0057       5.6       1      22 [.     695     716 ..     695     727 .. 0.90
   7 !   12.3   0.0   0.00013      0.13       3      29 ..     799     825 ..     797     842 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 9.5
       TPR_7  7 rlysrlGdyeeA 18
                 ++ rlGd + A
  CCE31128.1 51 LCHLRLGDSRSA 62
                579999998777 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0058
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 L+ L+ ly   G+ ++A++++e   al k p
  CCE31128.1 130 LCLLGKLYNGYGEKKKAVSCFED--ALKKNP 158
                 899999*****************..888776 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.013
       TPR_7   2 LlnLarlysrlGdyeeAielyeq 24 
                 L++++r+y ++  y+eA++++++
  CCE31128.1 560 LSQMGRCYYEQASYAEAEKFFRR 582
                 899******************99 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 1.3e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLal 28 
                 a+++L++++s  +d e+A++++++  a+
  CCE31128.1 627 AWCALGNAWSLARDPEQALRCFKR--AT 652
                 79**********************..65 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.014
       TPR_7  14 dyeeAielyeqsLaltkd 31 
                 +ye+A++ y+q  a++ d
  CCE31128.1 674 EYEKALTAYRQ--AIAAD 689
                 8**********..66555 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0057
       TPR_7   1 aLlnLarlysrlGdyeeAiely 22 
                 a++ ++r+++rlG y++A ++y
  CCE31128.1 695 AYYGIGRVQERLGAYDKAYDHY 716
                 7899**************9998 PP

  == domain 7  score: 12.3 bits;  conditional E-value: 0.00013
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLalt 29 
                 + L+ ly++ ++++ A+++++ +Lal+
  CCE31128.1 799 FLLGTLYRNTNERQLAVRHFTIALALD 825
                 78********************77776 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   4.6e-05     0.046       2      32 ..      32      62 ..      31      64 .. 0.93
   2 ?    6.0   0.0     0.018        18       8      32 ..     122     146 ..     121     148 .. 0.86
   3 ?   -0.7   0.0       2.4   2.4e+03       1      11 [.     149     159 ..     149     167 .. 0.80
   4 ?   -0.8   0.0       2.8   2.7e+03      14      34 .]     558     578 ..     557     578 .. 0.86
   5 ?    5.4   0.0     0.028        28      11      33 ..     623     645 ..     616     646 .. 0.85
   6 ?    3.3   0.0      0.14   1.3e+02       1      21 [.     647     667 ..     647     679 .. 0.77
   7 ?    6.6   0.3     0.012        12       1      32 [.     681     712 ..     681     714 .. 0.94
   8 ?    5.0   0.0     0.038        37       2      28 ..     716     742 ..     715     747 .. 0.84
   9 !   12.7   0.5   0.00013      0.13       2      34 .]     750     782 ..     749     782 .. 0.95
  10 ?    6.5   0.0     0.012        12       9      29 ..     791     811 ..     787     816 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.6e-05
      TPR_17  2 ylkaleldPnnadaynnLAelllknGdlmtA 32
                 ++++++dP+ +d+ +++A ++l++Gd++ A
  CCE31128.1 32 AERFVAQDPKASDSAYLYALCHLRLGDSRSA 62
                6899***********************9876 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.018
      TPR_17   8 ldPnnadaynnLAelllknGdlmtA 32 
                  +P++a ++++L++l+   G++++A
  CCE31128.1 122 GHPDSAAVLCLLGKLYNGYGEKKKA 146
                 58**************988877777 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.4
      TPR_17   1 lylkaleldPn 11 
                 +++ al+++P 
  CCE31128.1 149 CFEDALKKNPF 159
                 79********6 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 2.8
      TPR_17  14 daynnLAelllknGdlmtArq 34 
                 +++ +++++++++  +++A++
  CCE31128.1 558 WVLSQMGRCYYEQASYAEAEK 578
                 688899******999999985 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.028
      TPR_17  11 nnadaynnLAelllknGdlmtAr 33 
                  ++ a++ L+++++ + d+++A+
  CCE31128.1 623 YSPQAWCALGNAWSLARDPEQAL 645
                 5789****************996 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.14
      TPR_17   1 lylkaleldPnnadaynnLAe 21 
                 ++++a +l+P+ a+a+++ + 
  CCE31128.1 647 CFKRATQLNPKLAYAFTLQGH 667
                 79************9988776 PP

  == domain 7  score: 6.6 bits;  conditional E-value: 0.012
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtA 32 
                 +y++a++ d  + +ay+  +++++++G +++A
  CCE31128.1 681 AYRQAIAADRRHYNAYYGIGRVQERLGAYDKA 712
                 59*************************99887 PP

  == domain 8  score: 5.0 bits;  conditional E-value: 0.038
      TPR_17   2 ylkaleldPnnadaynnLAelllknGd 28 
                 y  a  ++Pnna++ + ++ +l+k+++
  CCE31128.1 716 YYAAQTINPNNAVLICCMGGVLEKQKQ 742
                 6677889**********9999998887 PP

  == domain 9  score: 12.7 bits;  conditional E-value: 0.00013
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 y ka+el P+ a   + +A++ll +G+ + A++
  CCE31128.1 750 YSKAAELAPKAAQTRYKKARALLTLGQVEAAQK 782
                 99***************************9986 PP

  == domain 10  score: 6.5 bits;  conditional E-value: 0.012
      TPR_17   9 dPnnadaynnLAelllknGdl 29 
                  P+ a ++++L++l+++ ++ 
  CCE31128.1 791 APDEATVHFLLGTLYRNTNER 811
                 5999************98865 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.34   3.3e+02      25      38 ..     124     137 ..     123     141 .. 0.93
   2 ?   -3.0   0.0       6.3   6.3e+03       1      13 [.     564     576 ..     555     576 .. 0.62
   3 ?   -0.8   0.0       1.3   1.3e+03      28      37 ..     625     634 ..     624     635 .. 0.90
   4 !   10.8   0.0   0.00031      0.31      11      31 ..     642     662 ..     640     667 .. 0.91
   5 !   24.5   1.4   1.6e-08   1.6e-05       6      42 .]     671     707 ..     666     707 .. 0.90
   6 !    9.8   0.3   0.00064      0.64       7      41 ..     706     740 ..     705     741 .. 0.93
   7 !    8.1   0.8    0.0021       2.1      13      42 .]     746     775 ..     745     775 .. 0.93
   8 ?    3.5   0.0     0.057        56      20      38 ..     787     805 ..     769     808 .. 0.72
   9 ?   -3.1   0.0       6.5   6.4e+03      20      26 ..     821     827 ..     814     828 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.34
      TPR_11  25 PdnaeayynLGlay 38 
                 Pd+a +++ LG++y
  CCE31128.1 124 PDSAAVLCLLGKLY 137
                 9***********99 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.3
      TPR_11   1 GdayyeqGkyeeA 13 
                 G+ yyeq  y eA
  CCE31128.1 564 GRCYYEQASYAEA 576
                 4446666666655 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.3
      TPR_11  28 aeayynLGla 37 
                 + a+++LG+a
  CCE31128.1 625 PQAWCALGNA 634
                 99******98 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00031
      TPR_11  11 eeAieaYkkAlkldPdnaeay 31 
                 e+A+ ++k+A +l+P+ a a+
  CCE31128.1 642 EQALRCFKRATQLNPKLAYAF 662
                 89****************997 PP

  == domain 5  score: 24.5 bits;  conditional E-value: 1.6e-08
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                    +ye+A++aY++A++ d    +ayy++G ++ ++G
  CCE31128.1 671 VNEEYEKALTAYRQAIAADRRHYNAYYGIGRVQERLG 707
                 5679*****************************9998 PP

  == domain 6  score: 9.8 bits;  conditional E-value: 0.00064
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 +G y++A  +Y +A  ++P+na + +++G ++ kq
  CCE31128.1 706 LGAYDKAYDHYYAAQTINPNNAVLICCMGGVLEKQ 740
                 699*******************9999999999887 PP

  == domain 7  score: 8.1 bits;  conditional E-value: 0.0021
      TPR_11  13 AieaYkkAlkldPdnaeayynLGlayykqG 42 
                 A+ aY+kA +l P+ a   y+ + a++ +G
  CCE31128.1 746 ALHAYSKAAELAPKAAQTRYKKARALLTLG 775
                 8899*****************999998887 PP

  == domain 8  score: 3.5 bits;  conditional E-value: 0.057
      TPR_11  20 AlkldPdnaeayynLGlay 38 
                   +l Pd a++++ LG +y
  CCE31128.1 787 LKDLAPDEATVHFLLGTLY 805
                 55788***********777 PP

  == domain 9  score: -3.1 bits;  conditional E-value: 6.5
      TPR_11  20 AlkldPd 26 
                 Al+ldP+
  CCE31128.1 821 ALALDPK 827
                 9*****7 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.058        58       2      23 ..      45      66 ..      44      70 .. 0.83
   2 ?    5.6   0.0      0.03        30       6      31 ..     133     158 ..     129     159 .. 0.89
   3 !    8.1   0.1    0.0045       4.5       5      31 ..     562     588 ..     559     589 .. 0.85
   4 ?    4.2   0.0     0.078        77       9      32 ..     634     657 ..     626     658 .. 0.78
   5 ?    3.4   0.2      0.14   1.4e+02      13      27 ..     665     686 ..     657     688 .. 0.69
   6 !    9.3   0.2    0.0019       1.9       2      32 ..     695     725 ..     694     726 .. 0.84
   7 ?    3.3   0.2      0.15   1.5e+02       3      32 ..     764     793 ..     762     794 .. 0.89
   8 ?    3.5   0.0      0.14   1.4e+02       3      31 ..     798     826 ..     796     828 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.058
                HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  2 AlyklalsyrklgdtdkAleal 23
                + y+ al++++lgd++ A +  
  CCE31128.1 45 SAYLYALCHLRLGDSRSAYDVA 66
                6799*******99**9998765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYP 31 
                 l+++y   g++ kA+  +e+ +k+ P
  CCE31128.1 133 LGKLYNGYGEKKKAVSCFEDALKKNP 158
                 788888878**************998 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0045
                 HHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYP 31 
                 +++++y+++  +++A + ++r + + P
  CCE31128.1 562 QMGRCYYEQASYAEAEKFFRRMRVQAP 588
                 79******88*********99766555 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.078
                 HHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   9 syrklgdtdkAlealerlikeYPd 32 
                 +   + d+++Al+ ++r  +  P+
  CCE31128.1 634 AWSLARDPEQALRCFKRATQLNPK 657
                 444457************999886 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.14
                 H.......HHHHHHHHHHHHHH CS
       TPR_6  13 l.......gdtdkAlealerli 27 
                 +        +++kAl+a+++ i
  CCE31128.1 665 QghehvvnEEYEKALTAYRQAI 686
                 34555554599********998 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPd 32 
                 A+y +++ +++lg +dkA + +    +  P+
  CCE31128.1 695 AYYGIGRVQERLGAYDKAYDHYYAAQTINPN 725
                 9*****************9987666666665 PP

  == domain 7  score: 3.3 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPd 32 
                  yk a++++ lg+ ++A + l  l +  Pd
  CCE31128.1 764 RYKKARALLTLGQVEAAQKELMILKDLAPD 793
                 6999******99*******99988888887 PP

  == domain 8  score: 3.5 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYP 31 
                  ++l+ +yr++++ + A++ +   +   P
  CCE31128.1 798 HFLLGTLYRNTNERQLAVRHFTIALALDP 826
                 699*******99******99987777666 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0       0.1     1e+02       5      48 ..      19      62 ..      15      64 .. 0.85
   2 ?    0.4   0.0      0.75   7.5e+02      26      60 ..     124     158 ..     122     167 .. 0.83
   3 ?   -2.1   0.1       4.5   4.4e+03      51      69 ..     494     512 ..     492     513 .. 0.85
   4 ?    4.2   0.0     0.049        49       8      31 ..     638     661 ..     631     666 .. 0.87
   5 !    8.7   0.7    0.0019       1.9       5      57 ..     669     721 ..     666     729 .. 0.87
   6 !   16.8   0.8   5.5e-06    0.0055       5      67 ..     737     799 ..     734     804 .. 0.92
   7 ?    2.4   0.0      0.17   1.7e+02      23      62 ..     789     828 ..     784     835 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.1
       TPR_9  5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaA 48
                +i +  ++ al  +er ++ +P++ +  +  +l++ +lG+ + A
  CCE31128.1 19 HIDNASYDNALFFAERFVAQDPKASDSAYLYALCHLRLGDSRSA 62
                78888899999999999999999999999999999999998777 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.75
       TPR_9  26 PddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 Pd++  +   G l+   G  ++A+ ++e +l ++p
  CCE31128.1 124 PDSAAVLCLLGKLYNGYGEKKKAVSCFEDALKKNP 158
                 77777777889999999**************9998 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 4.5
       TPR_9  51 dLeaylalapdapdaeair 69 
                  L  ++a ap apdae++r
  CCE31128.1 494 SLHKAAAPAPPAPDAETLR 512
                 6888899999******998 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.049
       TPR_9   8 eedweralavverllllaPddpee 31 
                 ++d e+al++  r  +l+P+ ++ 
  CCE31128.1 638 ARDPEQALRCFKRATQLNPKLAYA 661
                 68999**************98875 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.0019
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeayla 57 
                 +  +e++e+al ++   ++ + ++   ++  G+++++lG++ +A +   a+  
  CCE31128.1 669 HVVNEEYEKALTAYRQAIAADRRHYNAYYGIGRVQERLGAYDKAYDHYYAAQT 721
                 56789**************************************9887666555 PP

  == domain 6  score: 16.8 bits;  conditional E-value: 5.5e-06
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaea 67 
                 +  ++++  al ++     laP++++ r+  +++l  lG+++aA ++L    +lapd ++++ 
  CCE31128.1 737 LEKQKQMVLALHAYSKAAELAPKAAQTRYKKARALLTLGQVEAAQKELMILKDLAPDEATVHF 799
                 567899999***************************************9999***99999876 PP

  == domain 7  score: 2.4 bits;  conditional E-value: 0.17
       TPR_9  23 llaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                  laPd++  ++  G l+   +  + A++ +  +lal+p+a
  CCE31128.1 789 DLAPDEATVHFLLGTLYRNTNERQLAVRHFTIALALDPKA 828
                 589***********************************76 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.83   8.3e+02       5      32 ..      38      67 ..      33      75 .. 0.76
   2 !    9.4   0.0   0.00056      0.56     143     177 ..     124     158 ..     111     167 .. 0.88
   3 !    9.7   1.9   0.00045      0.45     139     245 ..     549     656 ..     537     670 .. 0.83
   4 !    5.7   4.8    0.0072       7.1      26     178 ..     677     827 ..     669     836 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.83
      TPR_15  5 rkpl..nealklatllykqgdvkkAlevLk 32
                ++p+  + a+ +a  +++ gd + A+ v k
  CCE31128.1 38 QDPKasDSAYLYALCHLRLGDSRSAYDVAK 67
                45553357899999***********99865 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00056
      TPR_15 143 eqsaafllaraelyrqegqtdaAlrdyreAlalap 177
                  +saa+l ++++ly   g++++A+ +++ Al+++p
  CCE31128.1 124 PDSAAVLCLLGKLYNGYGEKKKAVSCFEDALKKNP 158
                 489*****************************988 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00045
      TPR_15 139 eeaae.qsaafllaraelyrqegqtdaAlrdyreAlalap...dsselraallWlliDlgrraeLrellkawkaraesdasLwgplaaAlllLgrpkkA 233
                 ++aa+   + +l+ +++ y +++  ++A + +r+  + ap   ++ e+ ++ lW l    r++ L  l  ++ + +  +++ w +l+ A++l  +p++A
  CCE31128.1 549 LPAAQqTTPWVLSQMGRCYYEQASYAEAEKFFRRMRVQAPsrlQDMEVYSTVLWHLK---RETDLSFLAHELIDSSWYSPQAWCALGNAWSLARDPEQA 644
                 56655367889999*********99***99999988777744468999999999986...667788888889999999********************* PP

      TPR_15 234 Leylrkqakenr 245
                 L+ +++ ++ n+
  CCE31128.1 645 LRCFKRATQLNP 656
                 *****9988776 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0072
      TPR_15  26 kAlevLkeaaqkaapskdteyWrtladLAwalqqedearkAyrqLlasgkaraedyerliellydaepkeaarlaekgwrrfrs..prlLssaleller 122
                 kAl +    +q +  ++d   +  +   ++ +++  + +kAy + +a +  +++++  +  +    e ++ + la++++ +  +  p+  +   + + +
  CCE31128.1 677 KALTAY---RQAI--AADRRHYNAYYGIGRVQERLGAYDKAYDHYYAAQTINPNNAVLICCMGGVLEKQKQMVLALHAYSKAAElaPKAAQTRYKKARA 770
                 555544...2333..455666666666677777777777777777777777776666555556666666777777777777654224445555555555 PP

      TPR_15 123 akdydriaellksleeeea.aeqsaafllaraelyrqegqtdaAlrdyreAlalapd 178
                 +  + ++++  k+l+ +++ a ++a++ ++++ lyr++++ + A+r +  Alal+p+
  CCE31128.1 771 LLTLGQVEAAQKELMILKDlAPDEATVHFLLGTLYRNTNERQLAVRHFTIALALDPK 827
                 666777778888888666635599999999999999999999999999999999997 PP

>> DUF2225  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.22   2.1e+02     163     193 ..     125     155 ..      87     160 .. 0.81
   2 ?    6.4   0.4    0.0064       6.4     122     186 ..     656     714 ..     616     732 .. 0.85
   3 ?    2.6   0.1     0.093        92     163     205 ..     793     834 ..     735     842 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.22
     DUF2225 163 deatvlYLiaeLerrlgnkeealrwlskvig 193
                 d a vl L+++L   +g+k++a+  ++  ++
  CCE31128.1 125 DSAAVLCLLGKLYNGYGEKKKAVSCFEDALK 155
                 5566999****************99998776 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0064
     DUF2225 122 lrlAWlyrdkedeekeklflkkAlelykeayekesfpvegideatvlYLiaeLerrlgnkeealr 186
                  +lA+ + +++ e++ ++ ++kAl  y++a+  +++      +++  Y i+  + rlg +++a  
  CCE31128.1 656 PKLAYAFTLQGHEHVVNEEYEKALTAYRQAIAADRR------HYNAYYGIGRVQERLGAYDKAYD 714
                 5899999************************99998......67778888888888888887654 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.093
     DUF2225 163 deatvlYLiaeLerrlgnkeealrwlskvigskkaskpskikd 205
                 deatv +L++ L r + + + a+r +   +        +kik+
  CCE31128.1 793 DEATVHFLLGTLYRNTNERQLAVRHFTIALALDPKAG-PKIKE 834
                 6777****************99999987776654444.45555 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.3     3e+02       4      22 ..      46      64 ..      44      67 .. 0.83
   2 ?    1.3   0.2      0.75   7.5e+02       1      23 [.     625     647 ..     625     650 .. 0.80
   3 ?    6.4   0.1     0.017        17       2      21 ..     762     781 ..     761     784 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.3
       TPR_4  4 llaLArallalGdldeAra 22
                ++++A  +l+lGd+  A +
  CCE31128.1 46 AYLYALCHLRLGDSRSAYD 64
                678999*******988765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.75
       TPR_4   1 arallaLArallalGdldeAral 23 
                 ++a  aL+ a+ ++ d+++A++ 
  CCE31128.1 625 PQAWCALGNAWSLARDPEQALRC 647
                 56778888888888899999996 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.017
       TPR_4   2 rallaLArallalGdldeAr 21 
                 ++++  Arall lG+ ++A+
  CCE31128.1 762 QTRYKKARALLTLGQVEAAQ 781
                 678889************96 PP

>> Muraidase  N-acetylmuramidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0065       6.5      83     128 ..     550     595 ..     516     612 .. 0.86
   2 ?   -0.2   0.1      0.99   9.9e+02      69     104 ..     643     678 ..     626     697 .. 0.80
   3 ?    2.1   0.5      0.19   1.9e+02      50      93 ..     691     735 ..     647     790 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0065
   Muraidase  83 eaAlksaswGlfQimGfnykelgyksvedfvekmseseaeqleafv 128
                  aA + + w l Q     y+++ y+++e+f+++m+ +  ++l+ + 
  CCE31128.1 550 PAAQQTTPWVLSQMGRCYYEQASYAEAEKFFRRMRVQAPSRLQDME 595
                 589999*******9999******************99999998875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.99
   Muraidase  69 aeyerLekAaaldeeaAlksaswGlfQimGfnykel 104
                 +  + +++A +l+ + A++ +  G   ++ ++y+++
  CCE31128.1 643 QALRCFKRATQLNPKLAYAFTLQGHEHVVNEEYEKA 678
                 556779999999999999999999999998888765 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.19
   Muraidase  50 khpdivkpkwt.....rglykggaaeyerLekAaaldeeaAlksaswGl 93 
                 +h + +    +     ++      + y+ + +A++++ + A+  + +G 
  CCE31128.1 691 RHYNAY----YgigrvQERLGAYDKAYDHYYAAQTINPNNAVLICCMGG 735
                 222222....133333444455588999999999999999998888884 PP

>> DUF5113  Domain of unknown function (DUF5113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.4   5.3e+03      15      36 ..     134     155 ..     131     156 .. 0.88
   2 ?    8.9   2.3    0.0012       1.2       8      49 ..     659     700 ..     654     723 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.4
     DUF5113  15 ayylnvegeyeeALeyldsale 36 
                 ++ +n  ge ++A+++++ al+
  CCE31128.1 134 GKLYNGYGEKKKAVSCFEDALK 155
                 6789999***********9996 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0012
     DUF5113   8 andYanlayylnvegeyeeALeyldsaleylNahyekYakkk 49 
                 a ++   + +  v++eye+AL+  ++a+    +hy+ Y+   
  CCE31128.1 659 AYAFTLQGHEHVVNEEYEKALTAYRQAIAADRRHYNAYYGIG 700
                 556777889999**************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 5409.79
//
Query:       CCE31129.1  [L=169]
Description: uncharacterized protein CPUR_04980 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-48  163.4   0.1    4.2e-48  163.3   0.1    1.0  1  TMEM208_SND2  SRP-independent targeting protein 2/TMEM208


Domain annotation for each model (and alignments):
>> TMEM208_SND2  SRP-independent targeting protein 2/TMEM208
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.3   0.1   2.3e-52   4.2e-48       1     158 [.       1     166 [.       1     169 [] 0.85

  Alignments for each domain:
  == domain 1  score: 163.3 bits;  conditional E-value: 2.3e-52
  TMEM208_SND2   1 mAkksaKkiaeeNkatLknlrlislavnalylllrlllrsslrprslllylllslpalllyyvlekmgrpkyd.edgelvdsGeDLsegGlteymfD 96 
                   mA+k++K++a++N+a+L+ l+++sl++n+l+ll +ll     rprsl+ y l+ +p+l+++yvle++grpkyd ++g+l  +GeDL++ GlteymfD
    CCE31129.1   1 MAQKAKKDRAKSNTAALNSLHTGSLLFNILFLLSHLLW----RPRSLVAYGLFVTPSLICEYVLEASGRPKYDpATGALRTAGEDLAAAGLTEYMFD 93 
                   9*************************************....*******************************99********************** PP

  TMEM208_SND2  97 viyltwivqvlsilfgnkfWllylviPayalYklwglilgp.affkgagsa..........eeaaeeeeaksK 158
                   v+++tw+  vl++l+gn+ Wll++++Pay++Y+  gl+ +    +++++            +++a++ ++k +
    CCE31129.1  94 VVWVTWAAGVLVVLVGNWGWLLWALVPAYGAYLGSGLLGMGrRTLAQMKGGdalasagvggSADAAQGNRKAR 166
                   ************************************9983333332222223565555544333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1314.75
//
Query:       CCE31130.1  [L=206]
Description: uncharacterized protein CPUR_04981 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-58  197.3   0.0      2e-58  197.1   0.0    1.1  1  DUF3605   Protein of unknown function (DUF3605)


Domain annotation for each model (and alignments):
>> DUF3605  Protein of unknown function (DUF3605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   0.0   1.1e-62     2e-58       1     153 []      29     187 ..      29     187 .. 0.98

  Alignments for each domain:
  == domain 1  score: 197.1 bits;  conditional E-value: 1.1e-62
                 -HHHHHHHHHHT-GGG----HHHHHHHHHHHHHHT...TS-HHHHHHHHHT..-......STTS.TTSSGGGEEEEE-SS---B-TTEEEEEEEESS-- CS
     DUF3605   1 tWeevkeiieeneleklkRspsdlrrYlkfkkelkkkygsiveyilkerlk..W..eeleakeelpfadeedykillNdfPYgleedivHlvvWsktel 95 
                 +W+++k+iie+n+l+ lkR+psdlrrY+++++++k++ygs+++y+l +rl   W   ++++++++pf +++dy+illNd+PYgle++i HlvvW++t++
  CCE31130.1  29 DWQDLKQIIETNQLSILKRTPSDLRRYMSWTANTKAQYGSMTNYLLANRLPpsWglPPFAPESHIPFDRPSDYRILLNDWPYGLENNIAHLVVWTRTPI 127
                 6*************************************************87787666***************************************** PP

                 -TT-SS.HHHHHHHHHHHHHHHTHHH.......HT-EEEE---TTT-SSTTSEEEEEEEE CS
     DUF3605  96 eedeetgdlteesrakieefvkktfveklee..edkvlwFkNwasLqSvkaveHiHvllr 153
                 ++d+e gd+t+esra+++ fv++ fv++l+e  +++vlwFkNw +LqSv+a+eHiHvl+r
  CCE31130.1 128 PTDDEMGDMTPESRALVAGFVRRCFVDALGEngKERVLWFKNWVALQSVRALEHIHVLVR 187
                 ******************************999*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1620.86
//
Query:       CCE31131.1  [L=237]
Description: related to hydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-17   62.7   0.0    5.2e-17   62.4   0.0    1.1  1  Abhydrolase_3  alpha/beta hydrolase fold
    9.4e-14   51.0   0.0    1.2e-13   50.7   0.0    1.1  1  Say1_Mug180    Steryl acetyl hydrolase
  ------ inclusion threshold ------
      0.038   13.4   0.0       0.12   11.8   0.0    1.7  2  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   8.6e-21   5.2e-17      31     209 ..      14     196 ..       3     198 .. 0.86

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 8.6e-21
                    EEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---..........EEEEEEESE-SSTSSTT CS
  Abhydrolase_3  31 vvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepk..........vagqvliyPvtdlerte 116
                    ++++ +Y l Pe   P++v++++  +r+++++      d+s++++aGdSaGG+l + +++++ ++ + +          ++  vli+P+ +l    
     CCE31131.1  14 AIFALEYSLVPEETHPTQVNQVVLGYRHVLQEV----RDASKLCVAGDSAGGTLILSLLRELYNRTNGHqtngstmlavPQLAVLISPWITL--V- 102
                    57889**************************95....79********************99988853336899***************9855..3. PP

                    SHHHHHCHHTTTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS-...SST---...EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEETTEE CS
  Abhydrolase_3 117 sesikkaeeladgplltraaldlfwrlylpeadrddplaspllaed...lsglpp...tlvvvaefDplrdegeayaerlraagvevelieyegmv 206
                    s+ +  +   ++   l+r++l ++ ++y+ ++ +++ +asp l ++   ++ + p    +++ +++++l  +++a+ +r r +  e + +e++g v
     CCE31131.1 103 SSLHC-S---SKVDYLERDRLWAYGKAYA-GSMVQHSAASPGLCDNgqlWKTVSPergYFIIYGDEETLAPDAQAFIRRQRRNSIEIDAVEVKGGV 193
                    23332.2...233467899999999***9.78999******988334578888888889************************************* PP

                    TTG CS
  Abhydrolase_3 207 Hgf 209
                    H++
     CCE31131.1 194 HAW 196
                    *98 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   2.1e-17   1.2e-13     150     356 ..       8     202 ..       4     219 .. 0.76

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 2.1e-17
  Say1_Mug180 150 klfpdmailvsDYtvtaakdqskkYplqvleslavyd.ylvkskgfknvvvlGdSaGGnlvLslllk......lsklnk...vvlPkkaiaiSPWlnl 237
                   +f++ ai  ++Y+++      ++ p qv ++++ y  +l +     ++ v GdSaGG+l+Lsll +       +++n      +P+ a++iSPW+ l
   CCE31131.1   8 AQFKNPAIFALEYSLVP----EETHPTQVNQVVLGYRhVLQEVRDASKLCVAGDSAGGTLILSLLRElynrtnGHQTNGstmLAVPQLAVLISPWITL 101
                  5788889999*****99....7899*********997255667899******************977445555344443111457***********99 PP

  Say1_Mug180 238 tildekekeylkasdklDvlclkglelfgklyvnnrepeeelktdefvnieknfdievWseilekckllityGddEilkdqikllidkiselkeksys 335
                  +        +l+ s k+D l  + l  +gk+y++     ++   ++ +  +     ++W+ +  +   +i+yGd+E l  + + +i +          
   CCE31131.1 102 V-------SSLHCSSKVDYLERDRLWAYGKAYAGS--MVQHSAASPGLCDN----GQLWKTVSPERGYFIIYGDEETLAPDAQAFIRRQRRN----SI 182
                  8.......7889999*******************9..33444444444333....48****************************9886622....22 PP

  Say1_Mug180 336 epknvlidkqGiHigPilkys 356
                  e + v + k G+H  P+ + +
   CCE31131.1 183 EIDAVEV-KGGVHAWPVASLM 202
                  3333333.3567777776655 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.1e-05      0.12      51      83 ..      38      69 ..      25      74 .. 0.78
   2 ?   -1.5   0.0      0.24   1.5e+03      59      81 ..     112     134 ..     106     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.1e-05
                  HHHHHHHTTS--GGGEEEEEETHHHHHHHHHHH CS
  Peptidase_S9 51 aaealakegyvdserlaitGgSyGGyltgaaln 83
                  + +++  +++ d+++l++ G S+GG+l++ +l 
    CCE31131.1 38 GYRHV-LQEVRDASKLCVAGDSAGGTLILSLLR 69
                  55555.356889***************998875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.24
                   TS--GGGEEEEEETHHHHHHHHH CS
  Peptidase_S9  59 gyvdserlaitGgSyGGyltgaa 81 
                   +y +++rl ++G  y G ++   
    CCE31131.1 112 DYLERDRLWAYGKAYAGSMVQHS 134
                   48889999999999999988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1911.98
//
Query:       CCE31132.1  [L=289]
Description: related to negative regulator of transcription from Pol II promoter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-13   49.6   1.2    5.9e-13   48.9   1.2    1.3  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
     0.0061   16.9   1.0     0.0061   16.9   1.0    2.5  2  Histone        Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
       0.45   10.9   2.3         13    6.2   0.3    2.2  2  CENP-X         CENP-S associating Centromere protein X


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   1.2   9.9e-17   5.9e-13       2      65 .]     172     235 ..     171     235 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 9.9e-17
                    XXXHHHHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                    ++P+ar+k+Im+ d++++k+a++ ++ + +++e+f  ++ s +aei+ ++++K ++a  +k++v
     CCE31132.1 172 KFPVARIKRIMQADEEVGKVAQQTPIAVGKALELFMIQMVSSSAEIAREKGSKRVTASMLKQVV 235
                    89******************************************************99999876 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.0     1e-06    0.0061      62     118 ..     170     227 ..     108     230 .. 0.80
   2 ?   -2.4   3.0      0.95   5.7e+03      15      37 ..     263     285 ..     249     289 .] 0.30

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1e-06
                 SXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHH..TTXSE CS
     Histone  62 iqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakh..aKRvT 118
                   k+p+aR ++ i++ ++e  ++ ++++ a+ +alE +++++ + ++ +a++  +KRvT
  CCE31132.1 170 KTKFPVAR-IKRIMQADEEVGKVAQQTPIAVGKALELFMIQMVSSSAEIAREkgSKRVT 227
                 568*****.***********************************999999873356666 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.95
                 EXXXXXXXXXXHTTS-SSSSB-- CS
     Histone  15 tapekkvsakkerkasskskkkk 37 
                 ++ e++    +e+k+ sks++++
  CCE31132.1 263 AKAESDSDDDSEPKKRSKSISSR 285
                 11111111111112222222222 PP

>> CENP-X  CENP-S associating Centromere protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.3    0.0022        13       4      57 ..     178     229 ..     176     239 .. 0.79
   2 ?    4.3   0.1    0.0086        51      34      56 ..     243     264 ..     242     277 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0022
                 HHHHHCCC-SSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SE.... CS
      CENP-X   4 larlLqesfkdektkItkdalelvaeylklFvrEavaRaaeeaeeegkeeseks 57 
                 ++r++q    +e  k+++++  +v + l+lF   +v  +ae a+e+g+++ ++s
  CCE31132.1 178 IKRIMQAD--EEVGKVAQQTPIAVGKALELFMIQMVSSSAEIAREKGSKRVTAS 229
                 56666664..57789******************************999884444 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0086
                 HHHHHHHHHHHHHHHTT-SE... CS
      CENP-X  34 FvrEavaRaaeeaeeegkeesek 56 
                 F rE v R +e ++e+ k++ +k
  CCE31132.1 243 FLREIVSRVVETEKEGCKSK-AK 264
                 89*********777655554.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2272.68
//
Query:       CCE31133.1  [L=989]
Description: related to phosphatidylinositol 4-kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-33  115.7   0.0    1.1e-32  113.9   0.0    1.9  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    1.4e-19   69.8   0.2    3.4e-19   68.5   0.2    1.7  1  Pik1            Yeast phosphatidylinositol-4-OH kinase Pik1
     0.0098   15.3   0.0      0.019   14.3   0.0    1.4  1  DUF4135         Domain of unknown function (DUF4135)


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   0.0   1.8e-36   1.1e-32       2     243 ..     715     927 ..     714     934 .. 0.91

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 1.8e-36
                     EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHHHHHHCHCHC CS
  PI3_PI4_kinase   2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasveslrvaldkkk 96 
                     +++i+k g dlrq+   +q++ ++  ++   +   +    +k ++++ +g+++g+ie + +  +++sl +           as+es     ++++
      CCE31133.1 715 VSVIVKTGADLRQEAFACQLIDVCHRIWLDAGVNVW----VKLMRILVTGESSGLIETITNGVSLHSLKRSLT-------LASIES----GQNPR 794
                     5799********************************....***************************999866.......578888....33333 PP

                     CHHHHHCCHHHHHHTSSTTHHHHHHHHHSSSH..HHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHCSSSS CS
  PI3_PI4_kinase  97 lkkekklkfekrtalkpksgllqeFvkkspsa..eewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewkllpf 189
                     +                  +l ++Fvk + ++  e + +  + F rsla +s+++y+l++ DRh++N l+ + +g+++hIDfG++l +++   +f
      CCE31133.1 795 Q---------------RIAALRDHFVKAFGQPdsEPYKAGVDAFKRSLAAYSIISYVLQLKDRHNGNVLI-DSEGHIVHIDFGFMLSNSPGSVGF 873
                     2...............2369********998854566666******************************.***********************9 PP

                     -.SSSSSS-THHHHHHT..STTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH CS
  PI3_PI4_kinase 190 pqekvPfrltrelvlai..dpskdeglfresceealealrrdqnlltrllkkavkd 243
                     +    Pf+lt+e+v+++   +s d++ ++++c +a++alrr ++ ++ l +++ +d
      CCE31133.1 874 E--AAPFKLTHEYVQVLggLNSPDYEDYKTLCKQAFQALRRSADKIIDLVAMMGRD 927
                     5..99************999*****************************9997655 PP

>> Pik1  Yeast phosphatidylinositol-4-OH kinase Pik1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.2   5.7e-23   3.4e-19       3      51 .]     109     155 ..     108     155 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 5.7e-23
                 TTHHHHHHHHHHT--SS-SS.----TT--SS-SHHHHHHHHHHHHHT-- CS
        Pik1   3 gFqvcrrvlNklQfilFnlsaseqkkkkkfrENvsPalvLssavlssiA 51 
                 +Fq+crrv+Nk+Q+i+F+l   ++ +++k++ENv+P+ vLss+vl+s+A
  CCE31133.1 109 SFQTCRRVYNKVQHIVFGLA--DEARNEKIKENVLPVSVLSSFVLASFA 155
                 8******************9..99***********************98 PP

>> DUF4135  Domain of unknown function (DUF4135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.1e-06     0.019     131     190 ..     819     879 ..     796     981 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-06
     DUF4135 131 everfYrraGallallyllggtDlheeNl.iasgeqpvliDlEtlltheaeksaeeaaasa 190
                  v++f r + a+  ++y+l+ +D h++N+ i s +++v iD+  +l+++  +  +eaa  +
  CCE31133.1 819 GVDAFKRSLAAYSIISYVLQLKDRHNGNVlIDSEGHIVHIDFGFMLSNSPGSVGFEAAPFK 879
                 56777788889999***************9999*************885555555553333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.41
# Mc/sec: 7169.68
//
Query:       CCE31134.1  [L=920]
Description: uncharacterized protein CPUR_04985 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1631  (0.0909699); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.53u 0.35s 00:00:01.88 Elapsed: 00:00:00.52
# Mc/sec: 5320.07
//
Query:       CCE31135.1  [L=231]
Description: probable VPS21-Rab5-like GTPase involved in vacuolar protein sorting [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-57  194.1   0.0    1.5e-57  193.7   0.0    1.1  1  Ras          Ras family
    8.6e-34  116.3   0.0    1.3e-33  115.7   0.0    1.3  1  Roc          Ras of Complex, Roc, domain of DAPkinase
      4e-14   52.4   0.0    6.2e-14   51.8   0.0    1.3  1  Arf          ADP-ribosylation factor family
    3.5e-07   30.0   0.0    5.1e-07   29.4   0.0    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    7.7e-06   25.4   0.0    9.4e-06   25.1   0.0    1.1  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    0.00013   22.0   0.0    0.00022   21.3   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00039   20.9   0.1    0.00068   20.1   0.1    1.4  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
       0.01   15.7   0.0        1.8    8.4   0.0    2.3  2  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.7   0.0   6.6e-61   1.5e-57       1     160 [.      14     190 ..      14     192 .. 0.99

  Alignments for each domain:
  == domain 1  score: 193.7 bits;  conditional E-value: 6.6e-61
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Klvl+G+ avGK+sl+lrfv+++F+e++e+Tig++f+t+++++  +++k+eiwDTAGqe+f sl+++yyr+a+++l+vyd+t+ +s+ ++k+wv e++r
  CCE31135.1  14 KLVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCNLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPTSLVKAKHWVVELQR 112
                 99************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGG.................G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDlee.................kravsteegeelakelglkfletSAktnenveeafeellrei 160
                 +a+  ++i+LvGnK Dl++                  r+vstee++++a+e +l f+etSAkt +nv+e+f++++++i
  CCE31135.1 113 QASPGMVIALVGNKLDLASesaaesegadtgddaedARKVSTEEAKAYAEEESLLFFETSAKTGHNVTEVFTAIANSI 190
                 **************************************************************************9987 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.0     6e-37   1.3e-33       1     120 []      14     129 ..      14     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 6e-37
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K+vl+G+++vGK+sl+ rfv+++f+e++++tig+ flt+++ ++ +       +++k++iWDtaGqerf sl+p+y+r+a++a++vyd    +s  ++k
  CCE31135.1  14 KLVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKC-NLPT-------RTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDltkPTSLVKAK 104
                 99************************************998.4543.......5799*******************************53222335779 PP

                 HHHHHHHHHCSSS-EE.EEEE-TTT CS
         Roc  97 eWlkelkkvagkspvi.lvgnkiDl 120
                 +W+ el+++a+  +vi lvgnk+Dl
  CCE31135.1 105 HWVVELQRQASPGMVIaLVGNKLDL 129
                 *********998766559*****95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   2.8e-17   6.2e-14      12     174 ..      10     189 ..       4     190 .. 0.75

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 2.8e-17
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEE....EEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt.tvPTigfnvee....leiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLk 105
                 + +++++llG  + GK+ ++ ++ ++++++   PTig    +    l ++++kf++wD  Gqe+  +l   Y+++ +a + v D ++ + l +ak+ + 
  CCE31135.1  10 SSSVKLVLLGEAAVGKSSLVLRFVNNDFQEnKEPTIGAAFLTqkcnLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPTSLVKAKHWVV 108
                 5689*********************99987489****7654411115569***********************************************99 PP

                 HHCTSGCCTTSEEEEEEE-TTSTTSS-.HHHHHHHTTGGG....SS........SSSSEEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 106 alleeeelkevallvlaNKqDlpeals.eeelrellglee....lk........gkrkleiqkcsavkgeglkeglewlses 174
                 +l ++     +++ +++NK Dl++    e+e +++ +  e    ++         +++l  +++sa +g++++e ++ +++s
  CCE31135.1 109 ELQRQA-SPGMVIALVGNKLDLASESAaESEGADTGDDAEdarkVSteeakayaEEESLLFFETSAKTGHNVTEVFTAIANS 189
                 986655.556666678*****9754330333322222222344422334445556788888889999999988888888776 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   2.3e-10   5.1e-07      57     193 ..      50     191 ..      12     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.3e-10
                 SCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTE....EEEEEESCGST.....HHHHHHHHHHH CS
    GTP_EFTU  57 ksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqteevlrlalkegvp....iivfiNKmDrl.....kaelkeiveev 146
                  ++ ++l   t++ ++ + Dt G + F +     +r +  a++v d ++       +++ + l+++      i ++ NK+D +     ++e   + +++
  CCE31135.1  50 LTQKCNLP--TRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPTSLVKAKHWVVELQRQASpgmvIALVGNKLDLAsesaaESEGADTGDDA 146
                 34444555..9999************************************999999999999888887785344455******9888844555555555 PP

                 HHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 147 kqklsrkeeklekygekgekevpvvfgSalkgegvktllealvellp 193
                 ++  + ++e+ ++y+e++     ++ +Sa++g +v++++ a+ + +p
  CCE31135.1 147 EDARKVSTEEAKAYAEEE--SLLFFETSAKTGHNVTEVFTAIANSIP 191
                 554444577787787775..699*******************99887 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   4.2e-09   9.4e-06       1     159 [.      14     173 ..      14     195 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 4.2e-09
   Gtr1_RagA   1 kvLLmGksgsGKtsmr.siiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k++L+G+   GK+s+  + + + ++ +   ++ga+  ++k ++  ++ +++++wD  Gqe+f        +   +rn ++ + V D +  + ++ ++  
  CCE31135.1  14 KLVLLGEAAVGKSSLVlRFVNNDFQENKEPTIGAAFLTQKCNL-PTRTIKFEIWDTAGQERFASL-----APMYYRNAQAALVVYDLT--KPTSLVKAK 104
                 899***********8626788889999999******9999999.799**************9877.....478899************..555666666 PP

   Gtr1_RagA  99 keilealrqyspeakvfvlihKmDliqedereeifeerkeeireeie........klekeeiqffaTSi 159
                 + ++e  rq sp + +    +K+Dl +e++ e+   +  ++ +++ +         +e+e++ ff TS 
  CCE31135.1 105 HWVVELQRQASPGMVIALVGNKLDLASESAAESEGADTGDDAEDARKvsteeakaYAEEESLLFFETSA 173
                 67788889******************9877766655544444443332222222233444888888885 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   9.9e-08   0.00022       2      86 ..      15      95 ..      14     126 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 9.9e-08
                EEEEESTTSSHHHHHHHHHTSTEEESSST.....TSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgekaivsdkp.....gtTrdinegrvklkgkeielvDtpGliegaseek.glgkaflaleeadlillvvdas 86
                 +++G   vGKS+L+ + +++  + +++p     + T++ n  +   +  ++e++Dt+G  e    +  +l+  + +  +a+++l+v d++
  CCE31135.1 15 LVLLGEAAVGKSSLVLRFVNNDFQENKEPtigaaFLTQKCNLPT---RTIKFEIWDTAG-QE----RFaSLAPMYYR--NAQAALVVYDLT 95
                6899****************866666665332225555555554...4488********.44....23356666664..556666666655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1     3e-07   0.00068      27     124 ..      15     154 ..       4     172 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3e-07
      AAA_16  27 vllsGesGvGKsslv.rellralekd.....ggiflrgkcdqlesaipysalaqalareellrqllde.................aesaeleawrekle 102
                 ++l Ge++vGKsslv r + + ++++     g+ fl++kc   ++ i +  +++++ + e ++ l+ +                 ++  ++ +w  +l+
  CCE31135.1  15 LVLLGEAAVGKSSLVlRFVNNDFQENkeptiGAAFLTQKCNLPTRTIKF-EIWDTAGQ-ERFASLAPMyyrnaqaalvvydltkpTSLVKAKHWVVELQ 111
                 789************66666677777999**************999777.44444433.5555555554444222222222222244445555555555 PP

      AAA_16 103 eala.....................avpelagaeasrllellk 124
                 ++++                     + ++++g++a++ + + +
  CCE31135.1 112 RQASpgmvialvgnkldlasesaaeSEGADTGDDAEDARKVST 154
                 5554666666666666666665555555555555555555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00082       1.8     102     125 ..      15      38 ..       9      46 .. 0.83
   2 ?    5.2   0.0    0.0082        18      11      69 ..      80     158 ..      70     192 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00082
                  EEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelel 125
                   vl+G+  vGKS+L+ ++++++ +
   CCE31135.1  15 LVLLGEAAVGKSSLVLRFVNNDFQ 38 
                  699***********9988877554 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0082
                  TTEES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-...EEEEEEE-GGG--HHH..................HHHHHH CS
  RsgA_GTPase  11 pkvaNvdqllivvslkepelslnlldrfLvlaeekgi...epvivlnKiDlleeee..................eleelk 69 
                      N + +l+v  l+ + +sl   +  +v+++++      + +v nK+Dl++e+                   ++ee k
   CCE31135.1  80 MYYRNAQAALVVYDLT-KPTSLVKAKHWVVELQRQASpgmVIALVGNKLDLASESAaesegadtgddaedarkvSTEEAK 158
                  5566888999999999.667778888888888776552114455569******998545455444444444433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1746.82
//
Query:       CCE31136.1  [L=693]
Description: uncharacterized protein CPUR_04987 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-30  106.1  21.5    1.2e-30  106.1  21.5    5.6  6  Kri1      KRI1-like family
      1e-26   92.9   0.0      1e-26   92.9   0.0    4.4  5  Kri1_C    KRI1-like family C-terminal


Domain annotation for each model (and alignments):
>> Kri1  KRI1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.5  12.7         2   1.8e+04      19      38 ..      46      79 ..      35     158 .. 0.55
   2 ?   -2.6   0.3      0.94   8.4e+03      30      42 ..     189     201 ..     174     216 .. 0.47
   3 ?   -3.5   0.3       1.7   1.5e+04      13      25 ..     291     303 ..     273     331 .. 0.49
   4 !  106.1  21.5   1.3e-34   1.2e-30       1     103 []     340     463 ..     340     463 .. 0.97
   5 ?   -4.8   9.1         2   1.8e+04       6      43 ..     487     526 ..     482     543 .. 0.51
   6 ?   -5.9   6.8         2   1.8e+04       3      38 ..     610     653 ..     608     683 .. 0.65

  Alignments for each domain:
  == domain 1  score: -10.5 bits;  conditional E-value: 2
        Kri1 19 klkreeieeklekikkaag..............e 38
                  k++e ++kle+  +a g              +
  CCE31136.1 46 YNKKREERQKLEEKYNADGkgqnaggrngddddD 79
                4444444444444444444333333444443321 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.94
        Kri1  30 ekikkaageeeaa 42 
                 ++ik a+ge++++
  CCE31136.1 189 SEIKAAKGEDTSD 201
                 3344444422222 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.7
        Kri1  13 elkrlkklkreei 25 
                 e ++  +l+ e+ 
  CCE31136.1 291 EFEQAYNLRFEDP 303
                 2222222222222 PP

  == domain 4  score: 106.1 bits;  conditional E-value: 1.3e-34
        Kri1   1 erkeeekeekkeelkrlkklkreeieeklekikkaageeeaalkeleeeeledlldgdfDpekwdrkmkklFgeeyyaeede................. 82 
                 erkeeek++++ee++rl+klk ee+eekl+k+k+aag  +a+ kel+e+e++ +ld+++D++kw+++m k+Fg+eyya e++                 
  CCE31136.1 340 ERKEEEKRQRREEKARLRKLKLEETEEKLRKVKQAAG--AAG-KELTEAEWMAFLDEAWDNDKWEEEMMKRFGDEYYAVEEDgaadadsddnggeedat 435
                 79***********************************..555.***********************************99999**************** PP

        Kri1  83 .......eekkPkwdddidikdivpdde 103
                        ++ kPkwdddidikd+vpd+e
  CCE31136.1 436 dkkkkrkHPTKPKWDDDIDIKDLVPDFE 463
                 ******999****************986 PP

  == domain 5  score: -4.8 bits;  conditional E-value: 2
        Kri1   6 ekeekkeelkrlkklkreeieeklekikkaag..eeeaal 43 
                  ++e +ee +   + kr+ + +k ek++++++  ++ ++l
  CCE31136.1 487 DEDEDDEEEQSRPSKKRKSADHKREKLESQKKarQQRSKL 526
                 3444444444444556666777777777666621122222 PP

  == domain 6  score: -5.9 bits;  conditional E-value: 2
        Kri1   3 keeekeekkeelkrlkklkreeieeklekikkaag........e 38 
                 k++  +++  +++rl++ +r  + ++ ek   ++g        e
  CCE31136.1 610 KKRRDKKRLGKKARLREWRRGTFGREFEKDGPTYGferfmeegE 653
                 66667778888889999998888888888877777443332221 PP

>> Kri1_C  KRI1-like family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.8         2   1.8e+04      27      34 ..      45      52 ..      35      61 .. 0.46
   2 ?   -4.4   5.4         2   1.8e+04      66      86 ..     340     360 ..     324     364 .. 0.67
   3 ?   -2.0   1.5      0.46   4.1e+03      68      85 ..     505     522 ..     490     526 .. 0.50
   4 !   92.9   0.0   1.1e-30     1e-26       2      87 ..     525     629 ..     524     631 .. 0.82
   5 ?   -3.3   2.0       1.2   1.1e+04      66      80 ..     667     681 ..     659     686 .. 0.53

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 2
      Kri1_C 27 kYrevspe 34
                 Y++   e
  CCE31136.1 45 EYNKKREE 52
                33222222 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 2
      Kri1_C  66 kekkkkdkkklkkkkrlrewr 86 
                 ++k+++++++ ++k+rlr+++
  CCE31136.1 340 ERKEEEKRQRREEKARLRKLK 360
                 445556666666777777665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.46
      Kri1_C  68 kkkkdkkklkkkkrlrew 85 
                 + +++++kl+++k+ r+ 
  CCE31136.1 505 SADHKREKLESQKKARQQ 522
                 223333444444444444 PP

  == domain 4  score: 92.9 bits;  conditional E-value: 1.1e-30
      Kri1_C   2 kleelvdeyykldledvi...............g...dlkvrFkYrevspesFgLtareILlad.DkeLnefvglkklapYrdkekkkkdkkklkkkkr 81 
                 kle+lvd++ +l + ++                +   ++ + F+Yre sp+sFg+tar+ILla+ Dk+Ln++ glkkla++rd+ekk++dkk+l+kk+r
  CCE31136.1 525 KLEALVDSKLELTHHELLnpssssttaaaaaatSsskKDVMPFRYRESSPQSFGMTARDILLAPsDKDLNDYFGLKKLASFRDPEKKRRDKKRLGKKAR 623
                 688999999888888444444443333333333144488999*********************99********************************** PP

      Kri1_C  82 lrewrk 87 
                 lrewr+
  CCE31136.1 624 LREWRR 629
                 *****8 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 1.2
      Kri1_C  66 kekkkkdkkklkkkk 80 
                 +e+++ dkkk k+k+
  CCE31136.1 667 DEQQDGDKKKKKRKR 681
                 344444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2005  (0.11183); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                       120  (0.00669307); expected 17.9 (0.001)
Passed Fwd filter:                        57  (0.00317921); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.34u 0.31s 00:00:01.65 Elapsed: 00:00:00.49
# Mc/sec: 4238.67
//
Query:       CCE31137.1  [L=1115]
Description: related to nitrate assimilation regulatory protein nirA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-26   93.2   0.0    2.1e-26   92.6   0.0    1.2  1  Fungal_trans  Fungal specific transcription factor domain
    6.2e-09   35.8  10.9    1.3e-08   34.8  10.9    1.6  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   2.3e-30   2.1e-26       2     244 ..     352     592 ..     351     611 .. 0.89

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 2.3e-30
  Fungal_trans   2 drffsnfh.pqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsL 97 
                   ++ff+n++ + +++lhkps+++k       k++  +p l+l+++a++a+f+++ t   +        e +a++ r +i++    +++ +++++l +L
    CCE31137.1 352 EIFFDNVYgQAYQLLHKPSYMRKL------KNNTLPPVLVLSVCAVAARFAPQSTIVGTVRPFLR-GEEWASHAR-DICT---RRYEWPNVTVLTCL 437
                   68******9999************......*********************99887654444432.477877777.5666...79************ PP

  Fungal_trans  98 lllelyektssdralherhhgvavrlarslgLhrnpsyvgkks..lwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddl 192
                   l+l l e++++     + + g a+r+a  l Lh++ +   +k    + l++ ++e+rrR+ wa+F +D++ ++   rp ++++++i+++LP  ++ +
    CCE31137.1 438 LILGLHEFGTCHGGRSWALGGQAIRMAFALQLHKDLKEDTDKYgqKFPLSFIDQEIRRRIMWACFLMDRFNSSGSDRPMFIKEESIEIQLPVKES-Y 533
                   ************************************99998889966666666****************************************99.9 PP

  Fungal_trans 193 wesddaseetlvetk.......lsneeksrkiasfllaLkkilskiagsllsiekqlqq 244
                    + d  ++ + +  +        + +e ++  a ++++   i++ i+  l+  +k++++
    CCE31137.1 534 FQLDIPAQTEPLAGMvgqpephGDGQEGNMGVAAYIIRAIAIWGRIVTHLYHGGKHMDE 592
                   99999999888887799999998999999999999999999999999999988888875 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8  10.9   1.4e-12   1.3e-08       2      39 ..     191     227 ..     190     228 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.4e-12
                 S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39 
                 aC+ Cr+kK++C+++kPaC++C +++ +C+ y+  +++
  CCE31137.1 191 ACIACRRKKIRCSGEKPACKHCFRSRIPCV-YKVTTRK 227
                 9*****************************.9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 7601.85
//
Query:       CCE31138.1  [L=236]
Description: uncharacterized protein CPUR_04989 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1902.39
//
Query:       CCE31139.1  [L=2002]
Description: related to cell division-associated protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-162  541.7   0.3   2.6e-160  533.9   0.0    3.3  3  Peptidase_C50   Peptidase family C50
    2.4e-05   23.9   0.4     0.0033   16.9   0.1    3.1  2  CHAT            CHAT domain
    5.3e-05   23.4  11.2        0.1   12.9   0.1    6.3  7  TPR_12          Tetratricopeptide repeat
      0.001   18.8   2.1      0.031   14.0   0.1    4.0  5  RPN7            26S proteasome subunit RPN7
     0.0046   17.4   1.9          5    7.7   0.0    4.8  4  TPR_19          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.028   14.5   5.0    1.1e+02    3.3   0.0    6.0  5  TPR_2           Tetratricopeptide repeat
      0.031   14.1   0.3         74    3.4   0.1    4.7  4  TPR_1           Tetratricopeptide repeat
      0.084   13.3   1.2          7    7.1   0.0    4.2  4  TBCC_N          Tubulin-specific chaperone C N-terminal domai
       0.34   10.6   2.0       0.77    9.4   2.0    1.5  1  FAM176          FAM176 family
       0.44   10.4   2.1       0.93    9.4   0.2    2.6  3  T6PP_N          Trehalose-6-phosphate phosphatase N-terminal 
       0.62   10.5   4.8        1.7    9.1   4.8    1.7  1  PBP1_TM         Transmembrane domain of transglycosylase PBP1
       0.88    8.9  13.8       0.23   10.8   1.1    4.5  5  TPR_MalT        MalT-like TPR region
        0.9   10.2   3.4         26    5.5   0.0    3.9  3  TPR_16          Tetratricopeptide repeat
       0.95    9.8   3.6         16    6.0   0.0    4.9  6  TPR_8           Tetratricopeptide repeat
        1.4    9.2   5.5        1.9    8.8   2.8    2.7  1  DUF4611         Domain of unknown function (DUF4611)
        9.6    7.1   6.7    6.5e+02    1.4   0.0    5.9  5  TPR_6           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Peptidase_C50  Peptidase family C50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.05        56      78     154 ..     316     389 ..     311     461 .. 0.69
   2 ?   -0.8   0.2      0.57   6.4e+02     102     165 ..     491     554 ..     471     575 .. 0.63
   3 !  533.9   0.0  2.4e-163  2.6e-160       2     395 .]    1439    1889 ..    1438    1889 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.05
                    HHHHHHHHHHHHHHHHTTGGGGGGGS-E---HHHHHHHHHHHHHHHHHHSCHHHHSCHCCCCHTBTHHHHHHHHTCH CS
  Peptidase_C50  78 eLDkrLkeLleniekvwLggfkgilsqeerekellekfqkkfekilkkhlpsrkqkkkekkklelddrllelflglg 154
                    eLD+ +++Ll+++ +++ g ++g  s+ ++  e l+++++++  +l ++   ++++k+ ++ +   ++ll+ f+   
     CCE31139.1 316 ELDSGIEKLLQQVTDSLGGSLSGTVSELNELLESLAAVRRSVVGLLMRESDLKRESKSLDQTI---SALLKTFILQY 389
                    8*******************************************9999986666543333322...44555555443 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.57
                    GS-E---HHHHHHHHHHHHHHHHHHSCHHHHSCHCCCCHTBTHHHHHHHHTCHTTTTTHHHHHH CS
  Peptidase_C50 102 lsqeerekellekfqkkfekilkkhlpsrkqkkkekkklelddrllelflglgdaeedldeele 165
                    +++ ++ k+  ++++k++ + l++++ s k++++ +k+ +  +  lelf++l++   + ++++ 
     CCE31139.1 491 FLELRKMKDRSKNLNKQLLQSLSRSIDSVKDRSSVDKDKAQLSMKLELFADLCKGAGRSEDAVA 554
                    3344455666666777777777777766655544444444445678999999865444344443 PP

  == domain 3  score: 533.9 bits;  conditional E-value: 2.4e-163
                     TSSEEEEEEEETTSTEEEEEEECCCCCC...HH....HHHHHHHHHHHHHHHHHHHHCHCCHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
  Peptidase_C50    2 dkkdLllsrleagssplvlrlplerassrdadeevlsfeevkeelkeiieesnestksakdvktkeakkeWWkeReeLDkrLkeLleniekvwL 95  
                     +++dL +++l+ag+sp++lrlplera+ rda++ev++fe+++eel +ii+++ne+++sa+d+++k+++++WW+eRe+LD+rLkeLl +ie++wL
     CCE31139.1 1439 NRHDLSITKLQAGHSPFILRLPLERANGRDAHSEVFNFEHGREELIDIIRLANETSHSARDFSAKNERNAWWAEREALDTRLKELLLTIETTWL 1532
                     789******************************************************************************************* PP

                     GGGGGGGS-E---HHHHHHHHHHHHHHHHHHSCHHHHS........CHCCCCHTBTHHHHHHHHTCHTT...TTTHHHHHHHHHHHHHHHHHHT CS
  Peptidase_C50   96 ggfkgilsqeerekellekfqkkfekilkkhlpsrkqk........kkekkklelddrllelflglgda...eedldeeledllyfvvdilqfh 178 
                     ggfkgi+sq++r+++ll++fq++f+k+l+++lpsr+++        +k+++ ++ld+r+l+lf++lgd+   ++++de+l+dllyfvvdilqfh
     CCE31139.1 1533 GGFKGIFSQHQRRPDLLARFQRSFQKTLDRSLPSRNRMrgnkrttaAKTNQPVNLDPRILDLFIALGDPtdpDCEYDEALNDLLYFVVDILQFH 1626
                     ************************************999*****99999999***************999999********************* PP

                     T....GGGS.HHHHHHHHHHHHHHHHCCHHHCE...............SEEEEEE-TTCTTS-GGGSTTTTTS-EEEES-HHHHHHHHHHHCTT CS
  Peptidase_C50  179 gernaydeidfdslvvellealkeyeeaakeekkk...........ekehtiLvldkelqalPWEslpiLrgqsvsRvpSleslrellekskek 261 
                     gernaydeidfd++vve+ +al+ y +aak++  +           e +htiLvldk+l+a+PWEslp+++g +vsR pSl++lr+l+++s+ +
     CCE31139.1 1627 GERNAYDEIDFDAMVVEAYDALRGYYSAAKSKGGSgsdsgldlereEGSHTILVLDKALHAFPWESLPCMQGLAVSRAPSLACLRQLITQSNLP 1720
                     **************************99999877799********999****************************************999988 PP

                     ....................................GCSEEEESTSTEEEEE-TTS-SHHHHHHHHHHHHHHCCT-EEEESS---HHHHHHHHH CS
  Peptidase_C50  262 ....................................eegekvsksskgtyiLnPsgDLksTqetfeewleklekgwkgivgraPteeeleeaLk 319 
                                                         +++++vs+s  gty+LnPs+DLk+Tqe f++ l++l ++w+gi++++P+e+++e+aL+
     CCE31139.1 1721 sppsstsssnsdehedddddddddddekedaagnatRSRHHVSRS-TGTYMLNPSSDLKHTQEFFQPALQTL-PNWTGITNKRPSEADFEAALS 1812
                     ****************************99999998888898988.9**********************987.6******************** PP

                     HSSEEEEESSTTSTTTS-HHHHTT.S--.SEEEEESTTTT--ECTTTCECCSHHHHHHHTT-SEEEEESS--BHHHH CS
  Peptidase_C50  320 ssdlflYfGHGsGaqYirsreirklerc.aatlLmGCSSgalkeaGefepsGtvlnYllagcpavvanLWDVTDkDI 395 
                     +sd++lYfGHGsGaqYir+++ir+l++c aat+LmGCSS++l+eaGefe++G+v+nY+lagcp+vv++LWDVTD+DI
     CCE31139.1 1813 TSDILLYFGHGSGAQYIRGKTIRRLPQCrAATFLMGCSSVSLTEAGEFECYGPVWNYMLAGCPSVVGTLWDVTDRDI 1889
                     ****************************************************************************9 PP

>> CHAT  CHAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.6   1.8e+03     105     136 ..     677     708 ..     668     726 .. 0.78
   2 !   16.9   0.1     3e-06    0.0033     156     249 ..    1808    1900 ..    1665    1901 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.6
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CHAT 105 gteaEaeaiakllaegelkvllgeaatesalk 136
                 g e+E+eai++ l++  +++  +++a++s l 
  CCE31139.1 677 GQEEEVEAISESLGQTAEQLQKRDSAEDSGLA 708
                 67888999999999988787777777776655 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 3e-06
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CHAT  156 anpplqsglvlsaenseedglLtaeeilelnldgaelVvLsACqtglgevidgegvlgLaralllaGarsviaslwpVddeatalLmkrfyqnl 249 
                  +  ++ s ++l  ++   ++ ++++ i++l  +     +L  C + + +  ++ + +g ++  +laG +sv+++lw V d+   +++ r ++++
  CCE31139.1 1808 EAALSTSDILLYFGHGSGAQYIRGKTIRRLPQC-RAATFLMGCSSVSLTEAGEFECYGPVWNYMLAGCPSVVGTLWDVTDRDIDRFAGRTFEEW 1900
                  455556666666666667788888888884333.4455789999996666699999******************************99999876 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.9     1e+03      46      70 ..     261     285 ..     257     286 .. 0.64
   2 ?   -0.6   0.0       1.5   1.6e+03      40      69 ..     528     557 ..     504     562 .. 0.79
   3 ?   -2.9   0.0         8     9e+03      47      66 ..     685     704 ..     672     705 .. 0.77
   4 !    8.7   0.2    0.0019       2.1       7      71 ..     816     880 ..     812     884 .. 0.94
   5 !   12.9   0.1     9e-05       0.1       9      69 ..     990    1048 ..     984    1052 .. 0.92
   6 ?    1.2   0.0      0.42   4.7e+02      49      68 ..    1067    1086 ..    1061    1094 .. 0.75
   7 ?   -1.2   0.0       2.3   2.6e+03       3      32 ..    1186    1215 ..    1184    1236 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.9
      TPR_12  46 ttlrnLgrlyralgryeeAlellee 70 
                 ++++ Lg + +a+ +y+ A  ++e+
  CCE31139.1 261 SIYQVLGSVAHAARQYDGACCWFER 285
                 5666677777766677766666654 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.5
      TPR_12  40 dhpltattlrnLgrlyralgryeeAlelle 69 
                 d+++++  l   ++l+  +gr e+A++ l+
  CCE31139.1 528 DKAQLSMKLELFADLCKGAGRSEDAVATLR 557
                 55566666778999***********99887 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 8
      TPR_12  47 tlrnLgrlyralgryeeAle 66 
                 +   Lg++ ++l + + A++
  CCE31139.1 685 ISESLGQTAEQLQKRDSAED 704
                 55679999999999999986 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0019
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 ++la+ +   g++++A e l+ ++++ ++  G     +a  +   +++    g++eeA ++ ++a
  CCE31139.1 816 SHLAMQYVNIGKFTQASEALQISRDLLQQQEGISQRVVADFYLSQAEYSAGIGDWEEASDYIQRA 880
                 379999******************************************99***********9998 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 9e-05
      TPR_12    9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69  
                  + +v+++ g ++e   + + a  ia+++    +++ a++    g +y+++gr+ +Ale+le
  CCE31139.1  990 ISSVYAHIGMFQETVYYADFAAKIAEST--QSSLYRAQVATWTGSIYLKAGRLPKALEILE 1048
                  789*************************..66889************************98 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.42
      TPR_12   49 rnLgrlyralgryeeAlell 68  
                  + Lg++y+++g+ e+A + +
  CCE31139.1 1067 CKLGEMYSEMGQEEDADKCF 1086
                  56888888888888886665 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 2.3
      TPR_12    3 atalnnlaavlrrlgrydeAlellekalei 32  
                  a++l+ +a+   + ++++ Al+ l +a e+
  CCE31139.1 1186 AAVLVSRALGFIQKKDWALALSTLGQAKEL 1215
                  777888888899999999999999999776 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.98   1.1e+03      76     116 ..     431     484 ..     420     561 .. 0.72
   2 !   14.0   0.1   2.8e-05     0.031      38     135 ..     814     925 ..     784     939 .. 0.75
   3 ?   -0.1   0.0      0.59   6.6e+02      28      64 ..    1016    1052 ..    1006    1057 .. 0.76
   4 ?   -3.1   0.0       4.8   5.4e+03      40      64 ..    1067    1091 ..    1058    1096 .. 0.84
   5 ?   -1.1   0.0       1.2   1.3e+03     113     162 ..    1186    1235 ..    1113    1238 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.98
                 HHHHHHHHHHTT..-HHHHHHHHHHHHCSSS---............HHHHHHHH CS
        RPN7  76 llnlirvaiffn..dwdlvskylekakellekggd...........werknrlk 116
                  l +++ +i+ +  +w++++ +l+ + +ll++ +d            +++ +++
  CCE31139.1 431 TLMVVKSEIATGgiEWQQMDDVLQNCATLLDSVCDaavsstrmeqlGTYHVKIS 484
                 555555445444337999999999999999999996666555444444444444 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHHCT-HHHHHHHHHTCCCC-.....-SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHCSSS---.....HHHHHH.........HHHH CS
        RPN7  38 akldlaehYlkigdleeAlkaysrireyc.....tslkhkidmllnlirvaiffndwdlvskylekakellekggd....werknr.........lkvy 118
                 ++  la  Y++ig++++A +a++  r+ +     +s   ++d +l+  + +  ++dw+ +s y+++a+++  +            +         l  +
  CCE31139.1 814 CHSHLAMQYVNIGKFTQASEALQISRDLLqqqegISQRVVADFYLSQAEYSAGIGDWEEASDYIQRANTICGDSYStwaqS----KaqanvmlstLALI 908
                 67789999***************999977111114567899****************************998866544330....22233333335566 PP

                 HHHHHHHTT-HHHHHHH CS
        RPN7 119 eGlallairkfkeAael 135
                 + + +l++++  +A ++
  CCE31139.1 909 QSTVSLQTGNIDDALST 925
                 66666666666666555 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.59
                  HTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCC CS
        RPN7   28 enlgkeeirrakldlaehYlkigdleeAlkaysrire 64  
                  +++ +   ++     +  Ylk+g l +Al+ ++ + +
  CCE31139.1 1016 STQSSLYRAQVATWTGSIYLKAGRLPKALEILEGAQD 1052
                  55555556666666799*************9987665 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 4.8
                  HHHHHHHHHCT-HHHHHHHHHTCCC CS
        RPN7   40 ldlaehYlkigdleeAlkaysrire 64  
                   +l+e Y ++g+ e A k++  + e
  CCE31139.1 1067 CKLGEMYSEMGQEEDADKCFTIAEE 1091
                  6899************999986655 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 1.2
                  HHHHHHHHHHHHHTT-HHHHHHHHCTS-GGGT.TTT--HHHHHHHHHHHH CS
        RPN7  113 nrlkvyeGlallairkfkeAaellldilstftskellsyedlavyavlca 162 
                  + + v+ +l  ++ ++++ A ++l ++++  +    l+ e++++ a l++
  CCE31139.1 1186 AAVLVSRALGFIQKKDWALALSTLGQAKELPKLVGALTQERVITAASLIG 1235
                  44677888888899999999999999998888888888888888888775 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.098   1.1e+02      19      51 ..     526     559 ..     521     566 .. 0.83
   2 ?   -1.0   0.0       2.4   2.7e+03      31      51 ..     818     838 ..     796     849 .. 0.82
   3 ?    0.7   0.0       0.7   7.9e+02      36      53 ..     914     931 ..     888     943 .. 0.83
   4 !    7.7   0.0    0.0044         5       2      46 ..    1035    1084 ..    1024    1094 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.098
      TPR_19  19 qedpknaearllL.AeallalgqldeAealLdal 51 
                 ++d  ++  +l L A+++  +g+ ++A a+L  +
  CCE31139.1 526 DKDKAQLSMKLELfADLCKGAGRSEDAVATLRSI 559
                 55666777777666*****************876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.4
      TPR_19  31 LAeallalgqldeAealLdal 51 
                 LA  +++ g +++A ++L+  
  CCE31139.1 818 LAMQYVNIGKFTQASEALQIS 838
                 67779999********99855 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.7
      TPR_19  36 lalgqldeAealLdalpe 53 
                 l++g++d+A  ++++  +
  CCE31139.1 914 LQTGNIDDALSTIKTGVR 931
                 89********99998665 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0044
      TPR_19    2 laegdyaeAlalleqalqedpk...naearl..lLAeallalgqldeAea 46  
                  l++g++  Al++le a ++ p    +a+++    L e + ++gq ++A +
  CCE31139.1 1035 LKAGRLPKALEILEGAQDDIPRdicSARVQFacKLGEMYSEMGQEEDADK 1084
                  56777777777777777777776664444444466777777777777765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.65   7.3e+02       3      25 ..     814     836 ..     812     841 .. 0.90
   2 ?    3.1   0.1      0.11   1.3e+02       4      27 ..     857     880 ..     854     886 .. 0.80
   3 ?    3.3   0.0     0.096   1.1e+02       6      25 ..    1029    1048 ..    1024    1055 .. 0.85
   4 ?    2.7   0.0      0.15   1.7e+02       5      25 ..    1067    1087 ..    1064    1091 .. 0.89
   5 ?   -1.3   0.1       2.8   3.2e+03       2      30 ..    1187    1215 ..    1186    1215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.65
       TPR_2   3 alynlGlayyklgdyeeAleafe 25 
                 ++  l++ y + g++ +A ea++
  CCE31139.1 814 CHSHLAMQYVNIGKFTQASEALQ 836
                 6899**************99987 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
       TPR_2   4 lynlGlayyklgdyeeAleafekA 27 
                 +  +++  +  gd+eeA ++ ++A
  CCE31139.1 857 YLSQAEYSAGIGDWEEASDYIQRA 880
                 66667777788***********99 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.096
       TPR_2    6 nlGlayyklgdyeeAleafe 25  
                  + G +y+k+g++ +Ale +e
  CCE31139.1 1029 WTGSIYLKAGRLPKALEILE 1048
                  5699************9776 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.15
       TPR_2    5 ynlGlayyklgdyeeAleafe 25  
                  + lG+ y ++g+ e+A ++f 
  CCE31139.1 1067 CKLGEMYSEMGQEEDADKCFT 1087
                  579****************97 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 2.8
       TPR_2    2 ealynlGlayyklgdyeeAleafekAlel 30  
                   +l  ++l  ++++d++ Al  + +A el
  CCE31139.1 1187 AVLVSRALGFIQKKDWALALSTLGQAKEL 1215
                  5677889999999****999988888765 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.34   3.8e+02       3      25 ..     814     836 ..     812     837 .. 0.89
   2 ?   -0.5   0.0       1.1   1.3e+03      15      27 ..     868     880 ..     865     880 .. 0.93
   3 ?    2.3   0.0      0.15   1.7e+02       8      22 ..    1031    1045 ..    1030    1048 .. 0.92
   4 ?    3.4   0.1     0.066        74       5      25 ..    1067    1087 ..    1065    1091 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyye 25 
                 ++  l++ y + gk+ +A e+ +
  CCE31139.1 814 CHSHLAMQYVNIGKFTQASEALQ 836
                 6889**************99875 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
                 T-HHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekA 27 
                 g+++eA +y ++A
  CCE31139.1 868 GDWEEASDYIQRA 880
                 9**********98 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.15
                  HHHHHHTT-HHHHHH CS
       TPR_1    8 GnayfklgkydeAle 22  
                  G +y+k g++ +Ale
  CCE31139.1 1031 GSIYLKAGRLPKALE 1045
                  789**********98 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.066
                  HHHHHHHHHTT-HHHHHHHHH CS
       TPR_1    5 ynlGnayfklgkydeAleyye 25  
                  + lG +y ++g+ ++A +++ 
  CCE31139.1 1067 CKLGEMYSEMGQEEDADKCFT 1087
                  679****************96 PP

>> TBCC_N  Tubulin-specific chaperone C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.4   1.5e+03      10      69 ..      47     113 ..      39     118 .. 0.65
   2 ?   -2.9   0.0         8   8.9e+03      44      74 ..     320     352 ..     317     358 .. 0.57
   3 ?    0.3   0.1      0.79   8.9e+02      37      86 ..     412     460 ..     401     463 .. 0.85
   4 ?    7.1   0.0    0.0063         7      57     103 ..     586     632 ..     570     636 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.4
      TBCC_N  10 rqeqlekrkeereseaveeekvds.........FlkaFteekaaieellesve.esadksklkqkldeit 69 
                   ++ e +k+ +    +++ek++          F+  F++    i + l+s   +  +++k+ ++++++ 
  CCE31139.1  47 PAAKTETAKATKP---APSEKTTVaaeiadlleFKGGFSQATLPIITTLQSQVlKLVCATKRPSHIEALL 113
                 3333333333333...33444333445666788************9999998888888888888888765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8
      TBCC_N  44 aieellesve..esadksklkqkldeitaeiqe 74 
                  ie+ll++v+     + s   ++l+e+ +++++
  CCE31139.1 320 GIEKLLQQVTdsLGGSLSGTVSELNELLESLAA 352
                 689999999943333444444555555555544 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.79
      TBCC_N  37 aFteekaaieellesveesadksklkqkldeitaeiqeLqkllaessmfL 86 
                 +F+++++ai +++++   +a    +k++++    e q+++++l +    L
  CCE31139.1 412 QFDQRRQAILQSINQTL-DATLMVVKSEIATGGIEWQQMDDVLQNCATLL 460
                 79*************99.99999999999999999999998887766555 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0063
      TBCC_N  57 dksklkqkldeitaeiqeLqkllaessmfLpsYdlrsaqealskLke 103
                  +++++++l     +i++L+k+ ++ ++fLp+ +    +e l +L +
  CCE31139.1 586 ASTEKASSLSRTLRSIAKLDKSWNDWTFFLPEQERAAVLEHLMHLSA 632
                 5688999************************9999888888888876 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.0   0.00069      0.77      60      89 ..    1728    1757 ..    1705    1781 .. 0.40

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00069
      FAM176   60 klkeesekasededeeeeeeeedsseseae 89  
                  + +++++++++d+d+++++e+ed++ ++++
  CCE31139.1 1728 SSNSDEHEDDDDDDDDDDDEKEDAAGNATR 1757
                  111111111222222222222222222211 PP

>> T6PP_N  Trehalose-6-phosphate phosphatase N-terminal helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.3   4.9e+03      11      44 ..     299     332 ..     290     335 .. 0.88
   2 ?    9.4   0.2   0.00083      0.93       1      44 [.     339     381 ..     339     388 .. 0.89
   3 ?   -3.6   0.1       8.8   9.9e+03      27      57 ..     502     534 ..     500     541 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.3
      T6PP_N  11 rtrevRrqIvervLkgieirehfvesLknakesL 44 
                  +++v  +I ++ Lk+ e+++   + L+++ +sL
  CCE31139.1 299 MMCSVSARILASALKKPELDSGIEKLLQQVTDSL 332
                 58899999999******************99998 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00083
      T6PP_N   1 tleeFyelmyrtrevRrqIvervLkgieirehfvesLknakesL 44 
                 t++e+ el++++  vRr++v  ++++  ++ + ++sL+++ ++L
  CCE31139.1 339 TVSELNELLESLAAVRRSVVGLLMRESDLKRE-SKSLDQTISAL 381
                 799*************************9875.67898888776 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 8.8
      T6PP_N  27 ieirehfvesLknakesLeadce..tgtevlel 57 
                 ++++++  +sL+++ +s ++ ++  +++ +l++
  CCE31139.1 502 KNLNKQLLQSLSRSIDSVKDRSSvdKDKAQLSM 534
                 567888999999999999975553344444444 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.8    0.0015       1.7      32      63 ..    1731    1759 ..    1717    1771 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0015
     PBP1_TM   32 dddyddeyddeedDdddddeeeevprkgkkkk 63  
                   d+++d   d+ dDddddde+e+ +  + +++
  CCE31139.1 1731 SDEHED---DDDDDDDDDDEKEDAAGNATRSR 1759
                  444444...44555556666665544433333 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.8     2e+03     138     191 ..     233     290 ..     229     318 .. 0.73
   2 ?   -1.0   0.2       0.8     9e+02     168     229 ..     540     602 ..     505     625 .. 0.72
   3 ?    1.0   0.1       0.2   2.2e+02     242     278 ..     664     701 ..     649     707 .. 0.79
   4 ?   10.8   1.1   0.00021      0.23      84     174 ..     816     909 ..     790     934 .. 0.75
   5 ?    2.3   0.0     0.076        86      33      95 ..    1018    1078 ..     989    1097 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.8
    TPR_MalT 138 LeeAeqhlqeGielleql...epeaal.dayvllarialaqGdleeAetllekaeela 191
                 L +A+++l + i+l ++    +++  l  +y++l  +a+a  + ++A  ++e+++  +
  CCE31139.1 233 LSAAHDALTQMIRLNKHEpstSSKSPLsSIYQVLGSVAHAARQYDGACCWFERLKGSL 290
                 7889999999999999875332233333589999999999999999999999887655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.8
    TPR_MalT 168 arialaqGdleeAetllekaeelaresnfhvdw.lanaeevrvrlwlaqgdlaaaerwleaae 229
                 a+++   G+ e+A ++l+ +   ++e+ +  d+ +a a +   ++w  +++ ++++r l+++ 
  CCE31139.1 540 ADLCKGAGRSEDAVATLRSICTNMAEDGVLSDVaTALATQSPALAWASTEKASSLSRTLRSIA 602
                 455555677777777777777777777776655245666666777777777777777777664 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.2
    TPR_MalT 242 elrnlarvllal.grydeAlellerLlkaaeelgrvrs 278
                 ++r+l+++l+   g+++e++++ e+L ++ae+l+  +s
  CCE31139.1 664 RFRVLIHLLYQNiGQEEEVEAISESLGQTAEQLQKRDS 701
                 5666666666545999****************987665 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00021
    TPR_MalT  84 lqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleql.ep..eaaldayvllarialaq 174
                  ++a+++v  G++ +A e  + +  l ++q++  +++v   + ++a+     +d eeA ++ q++ +++ +  ++  +  ++a+v+l  +al q
  CCE31139.1 816 SHLAMQYVNIGKFTQASEALQISRDLLQQQEGISQRVVADFYLSQAEYSAGIGDWEEASDYIQRANTICGDSySTwaQSKAQANVMLSTLALIQ 909
                 4689999999999999999999999999999999999998888889999999999999999999999776643443355557777777766655 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.076
    TPR_MalT   33 eddllariaatavlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGr 95  
                  ++  l r+++   +G ++l +G+l++Al+ l+ a++ + +   + + +   ++++e++ + G+
  CCE31139.1 1018 QSS-LYRAQVATWTGSIYLKAGRLPKALEILEGAQDDIPRDICSAR-VQFACKLGEMYSEMGQ 1078
                  233.344444444599999999999999999888876633332222.3333456666666665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2      0.17   1.9e+02       4      59 ..     819     873 ..     818     881 .. 0.75
   2 ?    5.5   0.0     0.024        26      33      62 ..    1023    1052 ..    1010    1058 .. 0.82
   3 ?   -2.6   0.1       8.1   9.1e+03      11      30 ..    1130    1149 ..    1128    1152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.17
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyra 59 
                 a+ +++ g++++A +al++ +++     +   ++   +d +l q ++ + + ++ +a
  CCE31139.1 819 AMQYVNIGKFTQASEALQISRDLL--QQQEGISQRVVADFYLSQAEYSAGIgDWEEA 873
                 6678999**********9999988..4557777777777777777777777666655 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.024
      TPR_16   33 aaeAllllgdaalrqgrlaeAaalyraalr 62  
                  +a+ + + g ++l++grl++A++ ++ a++
  CCE31139.1 1023 RAQVATWTGSIYLKAGRLPKALEILEGAQD 1052
                  78899999**************99998876 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 8.1
      TPR_16   11 gdyddAaaaleaalkrdpss 30  
                  g+ ++A +a+++a+k +pss
  CCE31139.1 1130 GRATKASKAATTATKTAPSS 1149
                  89999*********999655 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       8.8   9.9e+03       8      25 ..     540     557 ..     538     558 .. 0.87
   2 ?   -2.1   0.0       5.7   6.4e+03       7      21 ..     689     703 ..     688     705 .. 0.89
   3 ?   -2.4   0.0       7.1   7.9e+03       7      24 ..     818     835 ..     817     836 .. 0.83
   4 ?   -2.8   0.0       9.6   1.1e+04       2      18 ..     985    1001 ..     984    1002 .. 0.81
   5 ?   -0.4   0.0       1.6   1.8e+03       8      27 ..    1031    1050 ..    1025    1052 .. 0.89
   6 ?    6.0   0.0     0.014        16       5      24 ..    1067    1086 ..    1063    1089 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 8.8
                 HHHHHHTT-HHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyye 25 
                 +++++  g+ e A+++++
  CCE31139.1 540 ADLCKGAGRSEDAVATLR 557
                 7899999*******9986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.7
                 HHHHHHHTT-HHHHH CS
       TPR_8   7 lgsiylklgdyeeAk 21 
                 lg++ ++l++ ++A+
  CCE31139.1 689 LGQTAEQLQKRDSAE 703
                 89**********997 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 7.1
                 HHHHHHHTT-HHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyy 24 
                 l++ y + g++ +A e++
  CCE31139.1 818 LAMQYVNIGKFTQASEAL 835
                 5666999*******9987 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 9.6
                  CHHHHHHHHHHHTT-HH CS
       TPR_8    2 eayynlgsiylklgdye 18  
                  +++++++s+y   g ++
  CCE31139.1  985 RSCLHISSVYAHIGMFQ 1001
                  79999999999888765 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 1.6
                  HHHHHHTT-HHHHHHHHHHH CS
       TPR_8    8 gsiylklgdyeeAkeyyeka 27  
                  gsiylk g++ +A e +e a
  CCE31139.1 1031 GSIYLKAGRLPKALEILEGA 1050
                  89********9999999865 PP

  == domain 6  score: 6.0 bits;  conditional E-value: 0.014
                  HHHHHHHHHTT-HHHHHHHH CS
       TPR_8    5 ynlgsiylklgdyeeAkeyy 24  
                  ++lg  y+++g+ e A +++
  CCE31139.1 1067 CKLGEMYSEMGQEEDADKCF 1086
                  89****************99 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.8    0.0017       1.9      57      79 ..    1730    1751 ..    1704    1765 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0017
     DUF4611   57 dvaaagdeeeegededdeeeekn 79  
                  + ++++d++++++d+dde+e+  
  CCE31139.1 1730 NSDEHEDDDDDDDDDDDEKED-A 1751
                  233334444444444444433.3 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       4.2   4.7e+03      13      26 ..     546     559 ..     538     562 .. 0.79
   2 ?   -0.6   0.0       2.4   2.7e+03       6      24 ..     818     836 ..     817     843 .. 0.85
   3 ?    0.8   0.0      0.87   9.8e+02       3      25 ..     855     879 ..     853     882 .. 0.82
   4 ?    1.2   0.0      0.65   7.3e+02       6      24 ..    1030    1048 ..    1028    1053 .. 0.88
   5 ?    1.4   0.0      0.58   6.5e+02       5      23 ..    1068    1086 ..    1068    1089 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 4.2
                 HHHHHHHHHHHHHH CS
       TPR_6  13 lgdtdkAlealerl 26 
                 +g++++A+++l+++
  CCE31139.1 546 AGRSEDAVATLRSI 559
                 689********986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAleale 24 
                 la+ y + g+ ++A eal+
  CCE31139.1 818 LAMQYVNIGKFTQASEALQ 836
                 7899999779999999998 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.87
                 HHHHHHHHHHH..HHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrkl..gdtdkAlealer 25 
                  ++l ++ +++  gd+++A ++ +r
  CCE31139.1 855 DFYLSQAEYSAgiGDWEEASDYIQR 879
                 5788888887558*******99988 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.65
                  HHHHHHHHHHHHHHHHHHH CS
       TPR_6    6 lalsyrklgdtdkAleale 24  
                   +  y+k+g+  kAle+le
  CCE31139.1 1030 TGSIYLKAGRLPKALEILE 1048
                  6889***99********98 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.58
                  HHHHHHHHHHHHHHHHHHH CS
       TPR_6    5 klalsyrklgdtdkAleal 23  
                  kl++ y ++g+ ++A + +
  CCE31139.1 1068 KLGEMYSEMGQEEDADKCF 1086
                  799************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2002 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1044  (0.0582297); expected 358.6 (0.02)
Passed bias filter:                      684  (0.0381505); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.31u 0.30s 00:00:01.61 Elapsed: 00:00:00.50
# Mc/sec: 11927.95
//
Query:       CCE31140.1  [L=198]
Description: uncharacterized protein CPUR_04991 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-38  130.7   0.1    4.3e-38  130.3   0.1    1.0  1  DUF5321   Family of unknown function (DUF5321)


Domain annotation for each model (and alignments):
>> DUF5321  Family of unknown function (DUF5321)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   0.1   2.4e-42   4.3e-38      10     155 ..      39     183 ..      33     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 2.4e-42
     DUF5321  10 rvaqpsfWkslipkplrkesaskakkkkkkkkewnpatffiviflLiGSqairmialknefaaytrkadakielLreviekvqrGEevdveklL.GtGd 107
                 +va+p+fWkslipkp+rke  ++++ k kk+kewnpatffi +f+LiGS+ i+mial+++ ++y r++  ki+ L+e + ++++GEe d +++L G+ +
  CCE31140.1  39 SVADPAFWKSLIPKPFRKE--NRKHGKGKKSKEWNPATFFINMFILIGSMPIQMIALRKQSKEYDRQSSLKIARLHETLRRLRNGEEADGDEILsGADE 135
                 699****************..8999999****************************************************************9956677 PP

     DUF5321 108 eekEreWeevLkeieeedallqkkkkkkekeeekkeeeeekkeeaeee 155
                 ++k+ +W+e+L+   +e + +  ++++ + ++++++++e+   +++ee
  CCE31140.1 136 AQKDLDWAELLRAAGSESTHRGAESATLKAAQHTTTTTEQPLMKDQEE 183
                 78999********99998888777776666666655555554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1492.15
//
Query:       CCE31141.1  [L=395]
Description: related to sirtuin type 4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-31  108.6   0.0    4.8e-31  108.0   0.0    1.3  1  SIR2      Sir2 family


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   2.7e-35   4.8e-31       1     176 [.      55     309 ..      55     310 .. 0.93

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 2.7e-35
                 -GGGGGGGT---SSSTTSHHHHSCHHH.HSSHHHHHHHHHHHHHHHHHHHHHHHCC.TSS--HHHHHHHHHHHTTCEEEEEES-SSSHHHHTT-S.SEE CS
        SIR2   1 GAGiStesGipdfRskeGlyaklakee.laspealfskkllveevfyniarellae.eaepnaaHkalkklekkgkllrliTQNiDgLekkaGsk.kvv 96 
                 GAG+S++sG+ d+R+ +G y+  ++++ +++ e + ++++++++ + +++  + +  +a+pna H+a++ l + g   ++iTQN+D  + ka  +   +
  CCE31141.1  55 GAGLSVASGLADYRGVKGTYRVNKTYRpIYHYEFVSNHEVRKRY-WARSFLGWSSLdKAHPNAGHYAIRDLGNLGLIRSVITQNVDSFHPKAHPQiPCL 152
                 9********************99888769999999999999999.********99989***********************************9999** PP

                 ETTEEEEEEEETTTSBEEECCGGHCHHHCCTT.................................................B-TTTCC........... CS
        SIR2  97 elHGslakakcvkcekkldkeelqeeieaekvp................................................ecekcgk........... 136
                 elHG l  + c++c++++++e+ q+++++ ++                                                  c+kc +           
  CCE31141.1 153 ELHGYLRATVCTSCKTEFSREQFQQDLSRLNPRwaallaeatasgaldtesteerkfrglkanpdgdvdlpeapyttfrypPCPKCLAdpprnasgerh 251
                 ****************************99988999********9999999999999999999999999999999999999777777788888888999 PP

                 .................BEEEEE--CTSB-SHHHHHHHH.HHHH-SEEEEES--STST CS
        SIR2 137 .................llkpdvvfFGealpdklkklie.kveeadlllviGtSlkVa 176
                                  +lkp vv+FGe++++++k+++e ++++   ll++GtSl+ +
  CCE31141.1 252 vvrvdadgawampstagVLKPAVVMFGESIESQVKTTAEdSIDRSGRLLILGTSLATY 309
                 99999999999999999*******************999899************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2962.13
//
Query:       CCE31142.1  [L=589]
Description: related to mitochondrial iron transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-52  177.4   3.6    3.7e-52  177.0   3.6    1.2  1  Cation_efflux  Cation efflux family
     0.0039   17.3   0.1     0.0097   16.0   0.1    1.6  1  ZT_dimer       Dimerisation domain of Zinc Transporter


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.0   3.6   4.1e-56   3.7e-52       2     198 ..     240     457 ..     239     458 .. 0.96

  Alignments for each domain:
  == domain 1  score: 177.0 bits;  conditional E-value: 4.1e-56
  Cation_efflux   2 ilsllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgllllglavfllleaiqkli... 94 
                    +l+ll+nl++a++++i+g+ +nS a++ada hsl+dl+s++l+ll++ +s+kpp+ +fp+G+g++e+lg+l ++ +ll++++++ +e+ ++l+   
     CCE31142.1 240 RLGLLSNLGMAIAKFIGGWAFNSRAMVADAWHSLADLASDVLTLLTVSWSSKPPNDQFPMGFGKVESLGSLGVSGMLLVGGLYMGWESAISLYghf 335
                    6899******************************************************************************************** PP

  Cation_efflux  95 ...................kegere.ihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlksgpl 170
                                       +++ ++ i++++a+++a++ ++++ +l++++++ +r+++s++l+++a+h+++D+lt +++l ++l++ + +++   +
     CCE31142.1 336 npegahhifehvghghshsHSPADLgIPSIHAVWLAAGTIFIKEWLYRATMKIARERKSSVLASNAVHHRVDSLTGIVTLAAILGANVLENAV--W 429
                    **************9987744444338999**********************************************************98876..* PP

  Cation_efflux 171 aDpvaslligliilysalkllkeslseL 198
                    +Dpv++lli+++++ +++++++++l+eL
     CCE31142.1 430 LDPVGGLLISIMVVSAGFQNTRDALYEL 457
                    *************************999 PP

>> ZT_dimer  Dimerisation domain of Zinc Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.1e-06    0.0097      21      73 ..     488     540 ..     463     543 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-06
                 EEEEEEEE-S----EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHH-TT--EEE CS
    ZT_dimer  21 gvhdlrtrksGskifvdlhievdgdlsvkeaHeiadevekrikeefpgvadvl 73 
                 +  d+   ksG++++vd+++ v+g  +v +  ++ d+v+ ++ +++ gv++v 
  CCE31142.1 488 ELRDISGVKSGQNYLVDVELAVPGACTVDDMRALEDAVRLQVGAKVRGVRRVR 540
                 566788889**********************************9999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 4609.53
//
Query:       CCE31143.1  [L=351]
Description: uncharacterized protein CPUR_04994 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-05   25.3   0.1    3.2e-05   23.9   0.1    1.8  1  ADH_zinc_N  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   1.8e-09   3.2e-05       1      70 [.     165     238 ..     165     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.8e-09
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEET..TTCH....HHHHHHHHTTTSSEEEEEESSCSHH CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadeviny..kead....lverikeltggegvdvvfecvGsga 70 
                 +vG aa+qlA+ +G  +i v  s++    +++ Ga+++++y  +  +    + + ++el  g+ +  ++++vG++a
  CCE31143.1 165 AVGNAALQLAREAGTWPIIVTASPRHHPELMRRGATACVDYkdE--RvldkILAIVQELAPGKALRHAVDAVGHNA 238
                 69*************666666666667999999********552..22334888889999999**********654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2944.52
//
Query:       CCE31144.1  [L=437]
Description: related to salicylate 1-monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-17   63.2   0.1    1.2e-14   54.4   0.0    2.4  2  FAD_binding_3   FAD binding domain
     0.0001   22.5   0.2    0.00029   21.0   0.2    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0016   18.1   1.3     0.0022   17.7   1.2    1.7  1  DAO             FAD dependent oxidoreductase
     0.0027   17.0   0.1      0.043   13.1   0.0    2.7  3  Amino_oxidase   Flavin containing amine oxidoreductase
     0.0078   16.8   0.1      0.019   15.5   0.1    1.7  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.019   13.7   0.1       0.19   10.4   0.1    2.0  2  HI0933_like     HI0933-like protein
      0.021   14.1   0.0       0.68    9.1   0.0    2.1  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.039   13.0   0.8        0.1   11.7   0.6    1.8  2  FAD_binding_2   FAD binding domain
      0.046   12.6   0.0      0.061   12.2   0.0    1.3  1  Trp_halogenase  Tryptophan halogenase
      0.046   12.9   0.1       0.11   11.7   0.1    1.6  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
       0.17   11.2   0.7       0.82    8.9   0.1    2.0  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
       0.21   10.8   0.4       0.45    9.7   0.2    1.7  2  Thi4            Thi4 family


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   7.9e-18   1.2e-14       4     299 ..       9     302 ..       7     304 .. 0.80
   2 !    6.2   0.0    0.0035       5.2     299     345 ..     325     373 ..     321     377 .. 0.81

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 7.9e-18
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHS.EECCCCEEEEEEECCCCCEEEEEHHCHHCST- CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaeg.apnelmgealynelsdtpkaradlelessper 98 
                    ++I+GaG +Gl++al L+  G+r  + e+  t ++l+ +  + +    +l +lGle+++ +   +p+e+++  +++  + t +   +l+   + +r
     CCE31144.1   9 IIIIGAGVSGLTTALALRWLGIRADVYERNPTITELGAGIAVGPNAAHMLGKLGLEAKLDEVSsRPQEGVNLKFREHADSTVRFVGRLN---TERR 101
                    68*********************************************************997615677777777777344455555555...8889 PP

                    CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGG.EEEEEEEEEEEEEEEEE CS
  FAD_binding_3  99 vtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgie.fegeetvyeagvldvlf 192
                       +   +l riL+++    +  q++ ++ ++ ++qd+ +vta + d +      v+   l+GaDG +S +r+    e    +++++  +++++ +
     CCE31144.1 102 SFYCHRAKLVRILADE---LPhDQIHLDKCLRDVTQDDHSVTAHFHDGT-----SVTGHVLIGADGIKSFARSLWNQEsCAFSGQIVVRNLIKAEA 189
                    99999*********99...6667999999999*************9985.....799999***************999666666677778888888 PP

                    EC.-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGS..CCCHHHHHHHHHHHHHHTTSSCEE..EEEEEEEEEEEEEE.ESSSE CS
  FAD_binding_3 193 da.dlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeer..sekfteeevkarlreivgektldv..eieevsawtvaqrv.aekyr 282
                       +l d+  +  + l++  + v   P e+++  ++  +    +  e+  s k+  +   ++  e+++++  +    +e  +++++ +r    ++ 
     CCE31144.1 190 LPpELHDCLVHGQVWLAPGRQHVVTFPIERAKYLAVGAIAPAIPGHEWgeSWKIRGDINFQDQLESFDPPVRELfkYSEGQTIYGLYERSeLPTWI 285
                    88888888777455556666667899999955555555555555666644556667777788888888877666646777788998877636789* PP

                    ETTEEE-GGGTEEE-ST CS
  FAD_binding_3 283 kgrvflaGDAaHihpPt 299
                    +gr+ l+GD+aH++ P 
     CCE31144.1 286 HGRLVLVGDSAHAMLPH 302
                    **************996 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0035
                    TTSHHHHHHHHHHHHHHHHHHHHHTT..SS-GGGGHHHHHHHHHHHHHH CS
  FAD_binding_3 299 tgGqGlNtaiqDavnLawkLaavlkG..eAkeelLdtYeeerravaqav 345
                    t GqG   +i+Da+ L   Laa+     e  ++ L+tY++ r+++   +
     CCE31144.1 325 TSGQGGSQSIEDAIVLSLTLAAAAASppEDLPRWLQTYQAARKPRTDHA 373
                    78*******************9988311334567*********997765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2   1.9e-07   0.00029       1      31 [.      11      41 ..      11      60 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.9e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31
                   I+GaG+sGl++A +L+  g++ +++e+++ +
     CCE31144.1 11 IIGAGVSGLTTALALRWLGIRADVYERNPTI 41
                   9**************************9876 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   1.2   1.5e-06    0.0022       2      33 ..       9      42 ..       8     341 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.5e-06
                EEEECTSHHHHHHHHHHHHT.T..EEEEESSSSTT CS
         DAO  2 vviiGGGiiGlstAyeLarr.g..Vtllekgdiag 33
                ++iiG+G+ Gl+tA++L r  g    ++e+++ + 
  CCE31144.1  9 IIIIGAGVSGLTTALAL-RWlGirADVYERNPTIT 42
                89***************.55688899999986655 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.41   6.1e+02       1      24 [.      16      39 ..      16      41 .. 0.91
   2 !   13.1   0.0   2.9e-05     0.043     211     253 ..     109     151 ..      43     162 .. 0.89
   3 ?    0.2   0.0      0.24   3.6e+02      92     216 ..     214     338 ..     174     401 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.41
                   HHHHHHHHHHHHTTEEEEEEESSS CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEard 24
                   ++GL++A  L   G +  v+E ++
     CCE31144.1 16 VSGLTTALALRWLGIRADVYERNP 39
                   69*******************875 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.9e-05
                    HHHHHHHHTTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEE CS
  Amino_oxidase 211 qlpealaeelrgldirlntrVkeikregdgvtvtledgevvea 253
                     l++ la+el+ ++i+l++++++++++++ vt +++dg++v++
     CCE31144.1 109 KLVRILADELPHDQIHLDKCLRDVTQDDHSVTAHFHDGTSVTG 151
                    57888999*******************************9865 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.24
                    HHHHHHHHHHHHHHHH..CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHCHTSTTTT CS
  Amino_oxidase  92 pvpaewealleqgals..aellsleeklrlgleallqktldeldldskslaesleelgrrepgdvev...wdrliepelfaklefasglfagdpse 182
                     +p e +++l  ga++  + +++++e+ +   + ++       + + +s++  ++el+++++g+ ++    +r  +       +++++l++ +   
     CCE31144.1 214 TFPIERAKYLAVGAIApaIPGHEWGESWKIRGDINF-------QDQLESFDPPVRELFKYSEGQ-TIyglYERSEL-----PTWIHGRLVLVGD-- 294
                    444444445554444455677888888888888888.......777777888888888888887.55233333333.....3556666666444.. PP

                    CBHHHHTCCCCHHHHHTSCCCEE...........TTHTHHHHHHH CS
  Amino_oxidase 183 lsaklalpllwelegfggslllp...........rgGlsqlpeal 216
                     sa++ lp++ + eg +   +++           +gG +++ +a+
     CCE31144.1 295 -SAHAMLPHQEAIEGRHVTSIFLvqklnmketsgQGGSQSIEDAI 338
                    .66666666666666666655555666666666666666666655 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.3e-05     0.019       2      56 ..       9      64 ..       8      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEE CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngie 56
                ++++G+G++gl  A al+ lg +  v er++++   + + +++ + +  l k+g e
  CCE31144.1  9 IIIIGAGVSGLTTALALRWLGIRADVYERNPTITeLGAGIAVGPNAAHMLGKLGLE 64
                79*******************************97777777777777777777666 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00013      0.19       3      35 ..       9      41 ..       7      48 .. 0.93
   2 ?    0.9   0.0     0.098   1.5e+02     102     168 ..     104     164 ..      86     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
                 EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like  3 viviGgGaAGlmaAisaakrgkrVlllekakkl 35
                 +i+iG+G +Gl +A++++  g r  ++e+++++
   CCE31144.1  9 IIIIGAGVSGLTTALALRWLGIRADVYERNPTI 41
                 8***************************99876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.098
                  EETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-G CS
  HI0933_like 102 FpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiP 168
                  ++ +   +++v++l  el + +  ++l++ +++v++++++ ++ + +++++++ + l+ A G +S++
   CCE31144.1 104 YCHR---AKLVRILADELPHDQ--IHLDKCLRDVTQDDHS-VTAHFHDGTSVTGHVLIGADGIKSFA 164
                  5555...678999999998775..6788999999776555.8999999************9999987 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00046      0.68       1      30 [.      10      38 ..      10      44 .. 0.84
   2 ?    2.7   0.0      0.04        60     228     271 ..     122     164 ..      98     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00046
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 iIiGaG  Gl++a++l+ +g+ +  + E++
   CCE31144.1 10 IIIGAGVSGLTTALALRWLGI-RADVYERN 38
                 8******************99.45677776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.04
  Pyr_redox_3 228 kvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdl 271
                  +++ +++++++++++++++ +++dg++v+  +  + a G k+ +
   CCE31144.1 122 QIHLDKCLRDVTQDDHSVTAHFHDGTSVTG-HVLIGADGIKSFA 164
                  689999*******************99875.6667777766655 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   6.8e-05       0.1       2      29 ..       9      36 ..       8      57 .. 0.87
   2 ?   -1.7   0.0      0.79   1.2e+03     317     354 ..      54      91 ..      36     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.8e-05
                   EEEE--SHHHHHHHHHHHHTTT-EEEEE CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavve 29
                   +i+iG+G++GL+ Al++++ G +  v e
     CCE31144.1  9 IIIIGAGVSGLTTALALRWLGIRADVYE 36
                   79****************9998876666 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.79
                    -TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTTS CS
  FAD_binding_2 317 ashgldaegleatleaineeaangldkdfgrgidpadr 354
                    a+h l++ glea+l+++   +++g+  +f +  d++ r
     CCE31144.1  54 AAHMLGKLGLEAKLDEVSSRPQEGVNLKFREHADSTVR 91 
                    56778888999999999999999999999988888776 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.1e-05     0.061       2      95 ..       9      97 ..       8     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.1e-05
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE.-SSS---SS-EE--THHHHTHHHHT--HHHHCHHCT-EEE-EEEEESSSSCESEEEEESS-.- CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlve.seeigtvgvGeatipsirkllrlLgideeeflreteatfKlgikFedWgkkgeryihsFgaig 95
                    i+i+G+G +G ++A al+  +   ++  + e  ++i  +g G a  p+  ++l  Lg++ +  l e+  + + g++  + ++++++ ++  g + 
      CCE31144.1  9 IIIIGAGVSGLTTALALRWLG---IRADVYErNPTITELGAGIAVGPNAAHMLGKLGLEAK--LDEVSSRPQEGVNL-KFREHADSTVRFVGRLN 97
                    89***************9999...55555552689************************88..99999999999987.66777776666656554 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   7.5e-05      0.11     145     200 ..       9      65 ..       7      96 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.5e-05
                  EEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHHHHHHHHTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 145 ivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaaleealekeGvev 200
                  i+++G+G+ G+ +A al+ lg ++ + e+++++   + + +++  +++ l k G e 
   CCE31144.1   9 IIIIGAGVSGLTTALALRWLGIRADVYERNPTITeLGAGIAVGPNAAHMLGKLGLEA 65 
                  567777777777777777777777777777777644444444455555555555555 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00055      0.82      31      63 ..       9      41 ..       3      46 .. 0.89
   2 ?    0.8   0.0      0.17   2.5e+02      34      65 ..      44      76 ..      38     111 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00055
                 EEEESTSHHHHHHHHHHHHTT-EEEEEESSHHH CS
  AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtvlDvrpar 63
                 +++iG+Gv Gl  + + + lg +  v++ +p+ 
   CCE31144.1  9 IIIIGAGVSGLTTALALRWLGIRADVYERNPTI 41
                 79*******************999999999875 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.17
                 ESTSHH.HHHHHHHHHHTT-EEEEEESSHHHHH CS
  AlaDh_PNT_C 34 iGgGva.GlqAiatakglgakVtvlDvrparle 65
                 +G+G+a G +A+++  +lg + ++ +v+++ +e
   CCE31144.1 44 LGAGIAvGPNAAHMLGKLGLEAKLDEVSSRPQE 76
                 8***955********999988877776665555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2    0.0003      0.45      18      50 ..       7      38 ..       1      75 [. 0.80
   2 ?   -2.4   0.0       1.5   2.2e+03      60      79 ..     380     399 ..     377     409 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0003
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailers 50
                  ++i+GaG sGLt+a  l    +++  + er+
  CCE31144.1  7 FGIIIIGAGVSGLTTALALRWL-GIRADVYERN 38
                579*************988766.7777777775 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.5
                 TSTTBSEEEEETTTHHHHHH CS
        Thi4  60 GGqlfsaivvrkpakelLde 79 
                  Gq f++++  +++  +L++
  CCE31144.1 380 TGQAFDKLMFSEEGMRFLQN 399
                 699*************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3022.66
//
Query:       CCE31145.1  [L=945]
Description: uncharacterized protein CPUR_04996 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-46  158.8   0.0    2.3e-46  158.2   0.0    1.3  1  AMP-binding      AMP-binding enzyme
    2.7e-28   99.6   0.0    9.5e-28   97.9   0.0    1.9  1  Thioesterase     Thioesterase domain
    4.2e-10   40.6   0.7    9.2e-10   39.5   0.7    1.6  1  Abhydrolase_6    Alpha/beta hydrolase family
    5.9e-09   36.2   0.7    2.4e-08   34.2   0.1    2.2  2  PP-binding       Phosphopantetheine attachment site
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.024   14.3   0.0    1.5  1  Abhydrolase_1    alpha/beta hydrolase fold
       0.03   13.6   0.0      0.057   12.7   0.0    1.4  1  Hydrolase_4      Serine aminopeptidase, S33
      0.085   12.4   0.0       0.15   11.6   0.0    1.3  1  PE-PPE           PE-PPE domain
      0.097   12.5   0.0       0.18   11.7   0.0    1.3  1  VirJ             Bacterial virulence protein (VirJ)
       0.17   11.7   0.0       0.35   10.7   0.0    1.5  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.2   0.0   1.2e-49   2.3e-46       2     422 ..      11     439 ..      10     440 .. 0.81

  Alignments for each domain:
  == domain 1  score: 158.2 bits;  conditional E-value: 1.2e-49
                  HHHHHHSTTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEET.TS-HHHHHHHHHHH CS
  AMP-binding   2 eeqaaktpdkvalvd....sgegqtlTYreldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvvplnp.tltaeelayileds 93 
                  +++a+k+p++    +    s + +++ Y+el +r++  A  L+ s+ v k+ ++++     +e+v ++  +  aG+v+v   p ++ +++ +  l+++
   CCE31145.1  11 RRAAEKFPQRGITFYsdggSMQKTHMLYSELVQRSQTNATLLLrSRTVCKDVCILLHFNSHIEYVEWFWSVIAAGGVPVISTPlASDPAARRKHLNHV 108
                  6788999977766557899888999******************99999**999**************************9999533334444455554 PP

                  TESEEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHH CS
  AMP-binding  94 eakvliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvasl 191
                  +   l+   ++ ++  + e  ++l  +++ i ld   +++  +++ +++++  +       +   +dla+++ TSG+TG+ K+V   h++++ +++  
   CCE31145.1 109 D--RLL---EHPKVLTSIELVGEL--TATGIPLDLVLVEQLPMVYPHSKPNGIS-----MGAEGDSDLAFLMLTSGSTGNAKAVECGHAQTMISMRG- 193
                  3..333...122222233444433..3344555655666666667677666554.....2245789**********************999999888. PP

                  HHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHH.CHHHHC...... CS
  AMP-binding 192 kletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvlealle.sgalk.aakkak...... 280
                  k +   k +++dv++ +  + h++ ++   + a++ Ga  +l+ ++   ++p +++e ++++kvt+ ++++ +l   ++  ++++      +      
   CCE31145.1 194 K-SSALKSTDRDVFFNWIGFDHVACVTETHIHAVALGADQILVAPSLLlARPVMFWEKLAEHKVTIAFAPNFFLALAVRaLEKPSgHG---Serpqlg 287
                  3.223555679***************999999**************995559999**********88888888887777454444222...1234334 PP

                  CGTT-SEEEEESS-EBHHHHHHHHHHHTC.......EEEEEEEEGGGSSECEE......CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEE CS
  AMP-binding 281 dlsslrlvllggeplspellrffralfge.......evlegYGlTEttgvvtv......lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeG 365
                  +l  lr+v++gge+   +++ +f++ +         ++  ++G+TEt+++v++      ++ ee++ +  svG+ + g   ++ D+e g ++p ++ G
   CCE31145.1 288 SLCDLRHVVSGGEANVVSTVNRFNEAVVSlggpeaaTLRTAFGMTETLAAVSYyqdfpsFE-EERDLQFCSVGQGISGLSFRLTDDE-GTELPVETDG 383
                  5667999*******************999999***99**************8889999655.666677889***************9.999******* PP

                  EEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 366 ellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                   l + gp v+k Y+k+   t  +f+  ++w++TGD gr+++ G+l + gR+kd i+l
   CCE31145.1 384 NLELFGPVVFKRYFKDAHNTMLSFT-TDGWFKTGDKGRMTASGHLILNGRAKDSIIL 439
                  ************************9.656*************************997 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   4.8e-31   9.5e-28       2     217 ..     675     924 ..     674     937 .. 0.62

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 4.8e-31
                   EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTSTSHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEEE CS
  Thioesterase   2 pLflfppagGsasvfrslasklsdpvvevlavqlpgrerdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavkslf 98 
                   p+f f+p++G + vf +l++ +sd+  +v+a+++pg++ +e++++s + + + y +a+r  qp+gPy+l+G+S+G+++AfevA+++e+ G +v +++
    CCE31145.1 675 PIFFFHPGFGEILVFLNLSKFFSDR--KVYAIRAPGFNPGEKMHKSVDHMTNVYWQAIRDKQPHGPYVLIGYSFGAMVAFEVAKKMEAAGDKVGFIG 769
                   89**********************9..*********************************************************************9 PP

                   EESCCCCCCHHCHHCCCHTTHHT.....HHHHHCCTTHH.HCCTTTHCCHHHHHHHHHHHHHHHHHTCCS.-TTSCSE...............HHCE CS
  Thioesterase  99 lidssapseteaqeasrraedee.....fveeltdlggt.epeelledeellsellpalradyraleqys.lrpeaaq...............klra 173
                        +p++ + +  +  +++       f++ + +++    ++el +       l ++l  d+ +   +  +++++                 +   
    CCE31145.1 770 TLN-LPPHI-KFRMIELDWTELVlnlayFLGFISEETAHaWSPELHKA---SHPLSHVLSRDQVVQRIMTiAPSQRLLeldltesklrhwaevS--- 858
                   998.56666.44444444433323444444433333332222222222...2333333333333322233123333332222222222222111... PP

                   EEEEEGSS-CTCCCCCCCHCH.........................................CHCTCESCEEEEEESSHCCHHHS CS
  Thioesterase 174 tlfngsddklkdldtlelaer.........................................weqktsgevsvhvlegdhfylle 217
                                       +                                          +++  g+v++h ++g+h +++ 
    CCE31145.1 859 ------------S-------QlqglthdydpsghvstmdvfyavpliavgcdkdqwlrdhllAWREYVGDVKFHDVPGSHSTMMN 924
                   ............1.......11112233444444444555555666666666666666666655566666666666666666665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.7   4.6e-13   9.2e-10       3     218 ..     679     929 ..     676     931 .. 0.64

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 4.6e-13
                    EE--GC.....GCHHHHHHHHCCT.CEEEEE--TTS..TS-GGCS--HHHCHHH..HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC....... CS
  Abhydrolase_6   3 llHGagssassWlvapLaallaag.vhvlapDlpGh..Grsdpppldledladl..aalldelaagggpvvlvGHSlGGalalaaapla....... 86 
                    + +G+g    ++l  +L ++++++ v  +a+ +pG+  G  + ++ +++    +   a+ d+ +  +gp vl+G+S+G+++a +   +a       
     CCE31145.1 679 FHPGFG-EILVFL--NLSKFFSDRkV--YAIRAPGFnpG--EKMHKSVDHMTNVywQAIRDKQP--HGPYVLIGYSFGAMVAFE---VAkkmeaag 762
                    445644.223345..99999999966..********988..99999998877777899999995..7777**************...666558888 PP

                    ..EE...EEES-.......----TTT..S----TTHHHHHHTT-CCCCHCCH.......................S-HSCCCCHHHC...CCCHCH CS
  Abhydrolase_6  87 lvvg...vlldppp.....talpagl..laaalelllallallrllawlsre.......................plprlfladeda...daawra 146
                    + vg    l  pp        l+  +  l   l+++l++++ +++ aw+ +                        ++++++l+ + +    ++w++
     CCE31145.1 763 DKVGfigTLNLPPHikfrmIELD--WteLVLNLAYFLGFISEETAHAWSPELhkashplshvlsrdqvvqrimtiAPSQRLLELDLTeskLRHWAE 856
                    33444435555544666442333..24466666666666666666666633333445222222222333333443333344442221345777777 PP

                    CCCGHHHHCCHHCHTTCCHHTT-TTGC...EEE..CTT-CHHHHCHHCCCH.STTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 147 rlarlaallaglgllpaaawadlpvpl...lvl..ggeDplvprllerlla.qagarlpvvlpgaGHlphleepdeva 218
                      + l+ l+   ++    ++ ++ v +   l+   +++D++++++l ++   + ++++ + +p ++H+ ++ +p+ v 
     CCE31145.1 857 VSSQLQGLTHDYDPSG--HVSTMDVFYavpLIAvgCDKDQWLRDHLLAWREyVGDVKF-HDVP-GSHSTMM-NPENVF 929
                    7777777777777555..777777777767554568*******999999998888888.9999.6699999.999886 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.82   1.6e+03      32      58 ..     118     143 ..     118     145 .. 0.87
   2 !   34.2   0.1   1.2e-11   2.4e-08       2      65 ..     579     644 ..     578     646 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.82
  PP-binding  32 llavellaaleeefgveiplsdlfehp 58 
                 l+++el+++l ++ g++++l  + ++p
  CCE31145.1 118 LTSIELVGELTAT-GIPLDLVLVEQLP 143
                 6899********9.****999887665 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 1.2e-11
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeef..gveiplsdlfehptlaelaa 65 
                 +l+ ++ae +g+++ e++++++l d+ +DS+ +++  + +++++  ++eipl  l+++p+++ laa
  CCE31145.1 579 RLLHIFAEEFGLDPHEVGVNDSLTDMDVDSIRVIRYKNLVQKKLalQIEIPLIHLLQNPSIEGLAA 644
                 7999****************************************88889999999*********98 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.2e-05     0.024       2     101 ..     675     765 ..     674     821 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH.HHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddld.rildalgddkltlvGhSmGGmialayaaeype 96 
                    ++ ++h + g+  v+ +  l + ++  +  v+++  +G+  +++ + +       +++ +++  +i+d+ + ++ +l+G+S+G m+a+++a +   
     CCE31145.1 675 PIFFFHPGFGEILVFLN--LSKFFS--DRKVYAIRAPGFNPGEKMHKS------VDHMTNVYWqAIRDKQPHGPYVLIGYSFGAMVAFEVAKKMEA 760
                    55666666666666777..665555..578888888888888888875......444555555589************************988654 PP

                    GEEEE CS
  Abhydrolase_1  97 rVkal 101
                      +++
     CCE31145.1 761 AGDKV 765
                    44444 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.9e-05     0.057      63     104 ..     723     765 ..     706     837 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
  Hydrolase_4  63 aaf.vekvkeehpelplfllGhSmGGliallyllrypdkvagl 104
                    + ++++++++p+ p +l+G S G+++a++++++ ++  +++
   CCE31145.1 723 TNVyWQAIRDKQPHGPYVLIGYSFGAMVAFEVAKKMEAAGDKV 765
                  444379999************************8877744444 PP

>> PE-PPE  PE-PPE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.5e-05      0.15      24      76 ..     714     765 ..     694     782 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.5e-05
      PE-PPE  24 tvdeSvaeGtenLeaairaelaagekvvvfGySqgalvasnekarlaalsepa 76 
                 ++ +Sv++ t+   +air ++    ++v +GyS ga+va +  +++ a+++++
  CCE31145.1 714 KMHKSVDHMTNVYWQAIRDKQ-PHGPYVLIGYSFGAMVAFEVAKKMEAAGDKV 765
                 67899**************55.8999*************99999998877665 PP

>> VirJ  Bacterial virulence protein (VirJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.8e-05      0.18      54     118 ..     719     786 ..     710     791 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.8e-05
        VirJ  54 ldrlikkyakrwkkkk....vvliGysfGaDvlPaaynkLkaatrdkvklvsllalskkadfeisvegW 118
                 +d++ + y +  + k+     vliGysfGa v  + ++k ++a  dkv +++ l l  + +f++   +W
  CCE31145.1 719 VDHMTNVYWQAIRDKQphgpYVLIGYSFGAMVA-FEVAKKMEAAGDKVGFIGTLNLPPHIKFRMIELDW 786
                 555555555444443322228*********775.666666777889*********99999998876666 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00018      0.35      93     151 ..      66     123 ..      63     134 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
  Methyltransf_23  93 ehvpdppellrqiatllkpgGylllseplaslkedrllldwlylvpagrhisffsarsl 151
                       h+ ++ e++  +++ ++ gG+ ++s+plas++++r+ + ++ ++   +h ++ ++ +l
       CCE31145.1  66 LHFNSHIEYVEWFWSVIAAGGVPVISTPLASDPAARRKHLNHVDRLL-EHPKVLTSIEL 123
                      5999*********************************9999999988.88888776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 6458.53
//
Query:       CCE31146.1  [L=576]
Description: probable D-xylulose kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-21   75.3   0.0    1.1e-20   74.2   0.0    1.6  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
    2.3e-20   73.2   0.0    7.5e-11   42.0   0.0    2.4  2  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom


Domain annotation for each model (and alignments):
>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.0   1.3e-24   1.1e-20       1     197 [.     304     519 ..     304     520 .. 0.83

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 1.3e-24
      FGGY_C   1 akvslGTssflllvgtkpv..isehglltpvagedgkpeyalegsiavagslva.wlldnl..glreeirdageveeslaelaaaeavadaggvvfvpa 94 
                 a vslGTs+++l++++++    s h++++p++        +++++++++g+l    ++d l  g+      +++   +++e+++a + +++ gv+   +
  CCE31146.1 304 AIVSLGTSTTFLMNTPTYRpdGSYHFFNHPTT-----SGHYMFMLCYKNGGLAReKVRDALlpGA---QPGSKQQ-PDWDEFNSAVLNTPPLGVTKEGD 393
                 579*************999889**********.....88*************7767777754444...5566665.9**************77777777 PP

      FGGY_C  95 fsglrapywdpdargti................tglsssttlahiarAaleavalqlrailealekd....sgkpldrlavdGGgskndllmqllAdil 173
                    l  +++  ++   i                  ++++++     r ++e++al++r + ++l  +     +++++r++++GGgs n++++++++d+l
  CCE31146.1 394 KAKLGLYFYLRETVPNIragtfrfdcstdgshlQQVQEPWSRQLDPRIIVESQALSMRLRSQNLVHSprdaLPAQPRRIYLVGGGSMNPAIARVIGDVL 492
                 7666664444333333446666777776666656777777799999******************77755556788************************ PP

      FGGY_C 174 g..vpVerpkt.aeatalGaAilAava 197
                 g    V++++    a+alG A++A +a
  CCE31146.1 493 GgaDGVYKLDVgGSACALGGAYKALWA 519
                 *************************98 PP

>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   9.7e-11   8.7e-07       1      95 [.       9     116 ..       9     128 .. 0.83
   2 !   42.0   0.0   8.4e-15   7.5e-11      98     244 ..     139     295 ..     136     296 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 9.7e-11
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SST.....T--EE-........HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEE CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspke.....gwaeqd........peeiwqalaeairkvleqagisekqikaIgisgqreglvllD 86 
                 l+lg+D++t+++kaiv++ + k +a+a++ +  ++++      g + +d        ++ +++al  ++  + ++  +s + i +++ sgq++g v+++
  CCE31146.1   9 LYLGFDLSTQQLKAIVVNSQLKTIAQAKVDFDGDFARDygihkGVHVRDatgevfapVAMWMEALDLVLDRLRDAMPVSMSRICGVSGSGQQHGSVFWN 107
                 69*****************************999998777777777777222222223467777777777777777*********************** PP

                 TTTEESSEE CS
      FGGY_N  87 kndkpLyna 95 
                 ++ + L +a
  CCE31146.1 108 NEAEGLLSA 116
                 999888776 PP

  == domain 2  score: 42.0 bits;  conditional E-value: 8.4e-15
                 TT--TTHHHHHHHHH.TTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--E.EEHHHHCTTTSEETTTTEE-HHHHH CS
      FGGY_N  98 wkdrrtaeiveklke.egnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfv.tdvtnasesmlfnikklewdeella 194
                 w+d+ t+++++   + +g+ ++l+e tg++++  ft+s +  l++  p++++++  + l++++L   L g  +  dv+++ +++l++i ++ +++ ll 
  CCE31146.1 139 WQDQSTQKECDAFDAlLGGRESLAEVTGSGAHHRFTGSQIMRLRQALPQMYANTSRISLVSSFLASLLIGSIApLDVSDVCGMNLWDIPNQRYSPDLLG 237
                 ***************99*****************************************************65438************************ PP

                 HTT--GG.......GS-EE.E-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHH CS
      FGGY_N 195 ilgipee.......lLPkl.vesseiigelkpelaaklGlkegvpvvggggDqqaaal 244
                 ++g  ++       +L +  + +++  g++ ++   k G+     +v+ +gD+ a+ l
  CCE31146.1 238 LAGGGHDgaeqlrqKLGEAeMDGGHSLGNISSYFVHKYGFSSDCQIVPFTGDNPATIL 295
                 **9888767754444544324678999*************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4125.85
//
Query:       CCE31147.1  [L=252]
Description: uncharacterized protein CPUR_04998 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-81  271.2  20.3    1.2e-80  270.8  20.3    1.2  1  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
     0.0044   16.7  13.1     0.0075   15.9  13.1    1.4  1  SR-25       Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
        0.4    9.1  11.9       0.52    8.8  11.9    1.0  1  Rrn6        RNA polymerase I-specific transcription-initiatio
        1.1    9.0   9.3        1.8    8.3   9.3    1.4  1  RR_TM4-6    Ryanodine Receptor TM 4-6
        2.8    6.6  10.6        3.6    6.3  10.6    1.3  1  SAPS        SIT4 phosphatase-associated protein
        2.9    7.5  15.6       0.69    9.6  12.4    1.5  2  Casc1_N     Cancer susceptibility candidate 1 N-terminus
        3.1    6.5  11.8          4    6.1  11.8    1.1  1  Presenilin  Presenilin
        5.8    6.9  14.9        4.4    7.2  13.9    1.3  1  FAM60A      Protein Family FAM60A
        8.2    4.4  10.3        9.8    4.2  10.3    1.0  1  Hid1        High-temperature-induced dauer-formation protein


Domain annotation for each model (and alignments):
>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.8  20.3   6.2e-84   1.2e-80       1     247 []       1     252 []       1     252 [] 0.87

  Alignments for each domain:
  == domain 1  score: 270.8 bits;  conditional E-value: 6.2e-84
                 XXXXXXXXXXXXXXX.XXXXXXXX--STTS----------TTT--HHHH.HHS-HHHHHHHHHHHHHHHHH-----------................. CS
  Cwf_Cwc_15   1 MttAhRPtfdpakGkealrgpskqyssrdlpahtkLKfRqegqgteeel.ekrdlraeLeeaeaeakakkrkkaeleaeeee................. 81 
                 MttAhRPtfdpa+Gkealrgp+  y++r lpa+t+LKfRq+gqg+++++  +rdl aeL++aea +++k +++++l   +++                 
  CCE31147.1   1 MTTAHRPTFDPARGKEALRGPA--YHQRLLPAYTQLKFRQAGQGGDADEyPTRDLAAELLAAEAVHFSKIKGSHSLPLLQDAdaddearataaptttsn 97 
                 **********************..********************9887758*******************99888877776678888877777777777 PP

                 ........--------------------------..--------------------------------------------------------------- CS
  Cwf_Cwc_15  82 ........ekekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeeeeesdddsdsdsdddddedetaeLlrELekikreraeekerkereka 172
                         +++++++++++e+ +akrr+  +lee+r++dadd+d+             +++++s++d+++de+aeL rELe+++rer+e+k+++e+e++
  CCE31147.1  98 hpqkkrpsSRDSASSSTSQEDYDAKRRR--ILEESRAVDADDSDDA------------SDNDSSSSDSEDDEEAELARELERVRREREEKKKKEEAERT 182
                 7777776555555555555566666666..7777777777777653............455667788889***************************** PP

                 -------------------...------------TTTS-SS-S-SSS----ST.TS--S-TTSSSHHHHHHHHSB. CS
  Cwf_Cwc_15 173 eeeekereeeiatgNpLlnlkskeesedfkvkrrWdddvvFknqargeeekkk.keFvnDllRsdFHkkFlkkyik 247
                 ++e ++re++ia gNpLln      + df++krrWdddvvFknqarg+eek+k keFvnDllRsdFH++F+ ky++
  CCE31147.1 183 KAEDEARERDIALGNPLLN------KPDFTMKRRWDDDVVFKNQARGTEEKGKkKEFVNDLLRSDFHRRFMGKYVR 252
                 *******************......579***********************999********************97 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9  13.1   3.8e-06    0.0075      27     126 ..      94     191 ..      69     215 .. 0.52

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.8e-06
       SR-25  27 ssrsssasksqsrkassasekeeerskekkkkkrrrssssssssssssssssssssssssddrkkrgkkkdkkkkkkkkkkkkkkekkkakekakaeaa 125
                 ++++    k +s + s++s++++e+   k+++  ++s +   + s  +s+  ssss s +d++ + +++ ++ ++++++ kkkk e  ++k  ++++++
  CCE31147.1  94 TTSNHPQKKRPSSRDSASSSTSQEDYDAKRRRILEESRAVDADDSDDASDNDSSSSDSEDDEEAELARELERVRREREE-KKKKEEAERTKA-EDEARE 190
                 3334444444444455555555555555555555555555555555555555555555555555544444444444444.334444444443.222223 PP

       SR-25 126 a 126
                 +
  CCE31147.1 191 R 191
                 3 PP

>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  11.9   0.00026      0.52     646     777 ..      50     189 ..      34     198 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00026
        Rrn6 646 irevaaelllSsirvsklraeasslssslssss....ssssssssssssedpelsredplda.lsrytklikssptsls.rsvsniLshWelg..sdpa 736
                 +r +aaell + +             + ++s s    + +  +++++ +++p+++++ p  +  s+ +  ++s +++   ++ ++iL++      +d +
  CCE31147.1  50 TRDLAAELLAAEAVHFS---------KIKGSHSlpllQDADADDEARATAAPTTTSNHPQKKrPSSRDSASSSTSQEDYdAKRRRILEESRAVdaDDSD 139
                 89999999999999333.........3333333444445666777777777777775555554444333333333333337899999987755563333 PP

        Rrn6 737 eydwqrtesale.aeeq........rqrarrkrekrrrrkeklklasrae 777
                 + +  +++s+++ ++e+        r r++r+++k++ ++e++k++++a+
  CCE31147.1 140 DASDNDSSSSDSeDDEEaelareleRVRREREEKKKKEEAERTKAEDEAR 189
                 33333333333322222346644444444444444444444444444444 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   9.3    0.0009       1.8      70     152 ..     106     184 ..      42     201 .. 0.42

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0009
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXX CS
    RR_TM4-6  70 LgDlseteaeesptpelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkakskk 152
                   D  +++++++   +++++  ee+ a +++++++ + +++  ++d+e+ e++e ++e    e+ ++e+ee+kkk++++++k 
  CCE31147.1 106 SRDSASSSTSQEDYDAKRRRILEESRAVDADDSDDASDNDS-SSSDSEDDEEAELARE---LERVRREREEKKKKEEAERTKA 184
                 11111111111111222222222222222222222222222.2223333333332222...2222222222222222222222 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  10.6    0.0018       3.6     243     356 ..     112     242 ..      47     247 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0018
        SAPS 243 geeivkerDevrerlleel....tseeealedvsdeaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdasseesalaee 337
                 +   ++  D+ r r+lee      ++++  +d+++++s++e+ e+++l+++ e v  e        +++++++e+++++ ++e+ e d++  +++l++ 
  CCE31147.1 112 SSTSQEDYDAKRRRILEESravdADDSDDASDNDSSSSDSEDDEEAELARELERVRRER-------EEKKKKEEAERTKAEDEARERDIALGNPLLNKP 203
                 23333344555555554442222222333444444444444444444444444443333.......333334444444445555555555555553333 PP

        SAPS 338 teeklr....................kkpvvGDlLKikl 356
                      r                    kk  v DlL+  +
  CCE31147.1 204 DFTMKRrwdddvvfknqargteekgkKKEFVNDLLRSDF 242
                 322222344444444444444444446666666666655 PP

>> Casc1_N  Cancer susceptibility candidate 1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       3.8   7.5e+03      17      23 ..     122     128 ..     104     140 .. 0.51
   2 ?    9.6  12.4   0.00035      0.69       5      54 ..     153     202 ..     149     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.8
     Casc1_N  17 ererlee 23 
                 +r+r+ e
  CCE31147.1 122 KRRRILE 128
                 2222222 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00035
     Casc1_N   5 eeEeeRlraeeeererleeerrekeereqlaaeqarrkeeleelkpllee 54 
                   Ee+ l++e e+ +r++ee+++kee+e+ +ae++ r+  ++  +pll++
  CCE31147.1 153 DDEEAELARELERVRREREEKKKKEEAERTKAEDEARERDIALGNPLLNK 202
                 459*************************9999999999988877777765 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  11.8     0.002         4     244     325 ..      98     196 ..      65     208 .. 0.37

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.002
  Presenilin 244 kkeeasesskeeeseeesseksaqsse........................seeeseeesseaessaeesseekeseessesseeeeeeeeeeeesese 318
                 + ++++ ss++++s+++s+       e                        s+++s+++ se++++ae  +e ++ ++++e+++++ee+e+++ e e +
  CCE31147.1  98 HPQKKRPSSRDSASSSTSQ-------EdydakrrrileesravdaddsddaSDNDSSSSDSEDDEEAELARELERVRREREEKKKKEEAERTKAEDEAR 189
                 1111111111111111111.......1112222344444445544443322111111111111112222222222222222222222333333333334 PP

  Presenilin 319 ergvkLG 325
                 er + LG
  CCE31147.1 190 ERDIALG 196
                 4555555 PP

>> FAM60A  Protein Family FAM60A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  13.9    0.0022       4.4      77     171 ..      86     180 ..      68     196 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0022
      FAM60A  77 vdaragpglkslaklkkk.ekkesskkieekfekklkkkkklkktkakasdasssereaspassdsasedsdesedeeekkrkkllekkkkrsaek 171
                   a+a p++ s + +kk+ ++++s++++ ++ +  +k+++ l++++a  +d s++++++ ++ssds ++d++ + ++e ++ ++ +e+kkk+++++
  CCE31147.1  86 ARATAAPTTTSNHPQKKRpSSRDSASSSTSQEDYDAKRRRILEESRAVDADDSDDASDNDSSSSDS-EDDEEAELARELERVRREREEKKKKEEAE 180
                 467899*******99999666666666666777777888887776666666655555555555554.33333334444444444444444333333 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  10.3    0.0049       9.8     593     688 ..      95     190 ..      63     217 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0049
        Hid1 593 dsideeeeenssessrieesrsesrspslsevpelksslaitddeskaereksatessssqavsqlremsekarakesaesteesrqesatskksp 688
                 +s + ++++ ss++s ++++++e   ++  ++ e+  ++ + d++++++++ s++ s++++ ++ +re++  +r+ e+++++ee++  +a++++++
  CCE31147.1  95 TSNHPQKKRPSSRDSASSSTSQEDYDAKRRRILEESRAVDADDSDDASDNDSSSSDSEDDEEAELARELERVRREREEKKKKEEAERTKAEDEARE 190
                 333334444444444444444444444444444444444444444444444444444444444455666666666666665555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2165  (0.120754); expected 358.6 (0.02)
Passed bias filter:                      689  (0.0384294); expected 358.6 (0.02)
Passed Vit filter:                       136  (0.00758548); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 1636.53
//
Query:       CCE31148.1  [L=302]
Description: probable rRNA processing protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-24   85.9   0.0    4.9e-24   85.3   0.0    1.3  1  RNase_PH    3' exoribonuclease family, domain 1
    1.2e-08   34.9   0.0      2e-08   34.2   0.0    1.4  1  RNase_PH_C  3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   5.5e-28   4.9e-24       1     132 []      32     164 ..      32     164 .. 0.94

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 5.5e-28
                 EEEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CCEEEECCCCECCCCEC-C...S...HHHHHHHHHHHHHHCCTC-C....... CS
    RNase_PH   1 elRslsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddaegaldveveyapfasgerrregrpsdeeielsrlleralrpsill....... 92 
                 ++R++++ +g      G a +++G+t v+a v++++++ p+++  +++g +++  e++p+++++++  +rp+++e++lsr+le+++r+s+ l       
  CCE31148.1  32 QFRPIELTFG---DDYGVADVKCGKTRVVAKVSAEVTV-PFTD-RPFDGIFSIASELSPMIAPSFEV-HRPTEQEVLLSRMLEKTIRRSGALdteslcl 124
                 6999999999...999********************99.8888.556799***************77.9**********************88888888 PP

                 .CGCCTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  93 .ekkpkstididitvlssdggslldalinaaslALadagip 132
                   +++++ ++ d++vls+dg +lld+++ a+++AL +++ p
  CCE31148.1 125 iAGQKCWSVRADLHVLSHDG-NLLDVSCFAVIAALRHFRKP 164
                 99999***************.**************999876 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   2.2e-12     2e-08       2      65 ..     191     266 ..     190     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 2.2e-12
                 --EEEEEEEETTE............EEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSCEEHHHHHHHHHHHH CS
  RNase_PH_C   2 pviavtvgkvddq............fvlDptkeEedlsegdltlavagtkevvtlmkeggsqldeetlleaielAk 65 
                  + +vt+++++++            ++lD t  Ee+l+ ++ t+ +++++e+++++k+gg+ +d+  ++++  +A+
  CCE31148.1 191 SPFCVTFSFFGEKghggdqneegelVLLDSTWLEEQLRVSSCTFSLNKHGEICQVSKLGGADVDAPVFVQCAQMAL 266
                 689********55555555677889**********************************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2197.68
//
Query:       CCE31149.1  [L=233]
Description: probable ADP-ribosylation factor-like protein,member of the arf-sar family in the ras superfamily [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-39  135.6   0.0    1.7e-39  135.1   0.0    1.2  1  Arf        ADP-ribosylation factor family
    5.5e-12   45.5   0.0    4.3e-07   29.4   0.0    2.0  2  G-alpha    G-protein alpha subunit
    1.8e-08   34.6   0.0    3.2e-08   33.8   0.0    1.4  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    1.9e-08   34.0   0.0    2.2e-08   33.8   0.0    1.1  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
      3e-08   33.4   0.0    6.4e-08   32.4   0.0    1.5  1  Ras        Ras family
    7.9e-08   31.9   0.0    1.4e-07   31.2   0.0    1.3  1  SRPRB      Signal recognition particle receptor beta subunit
    0.00046   20.3   0.0     0.0007   19.7   0.0    1.3  1  MMR_HSR1   50S ribosome-binding GTPase
     0.0026   17.3   0.0     0.0085   15.7   0.0    1.7  2  GTP_EFTU   Elongation factor Tu GTP binding domain


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.0   7.5e-43   1.7e-39      11     173 ..      36     219 ..      31     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 7.5e-43
                 .TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.......CSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CT....... CS
         Arf  11 kkkelrilllGLDnaGKtTilkklkleelvt.......tvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadre....... 95 
                 +  e+ ++llGLDnaGKtT  +++k+  l +       tvPT+g nv +++  ++ +++wDvGGq +lR+lW++Y+++ +a++f++Ds+d         
  CCE31149.1  36 NGAEYSVILLGLDNAGKTTFHEQVKSMYLPHapepklkTVPTVGQNVSTITLPDMYLKLWDVGGQLSLRNLWQSYYASCHAIVFIIDSTDIGdgtlgdd 134
                 457899**************999887655544445555**************************************************97422333334 PP

                 ..THHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS.....SSSSEEEEEEBTTTTBTHHHHHHHHHH CS
         Arf  96 ..RleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelk.....gkrkleiqkcsavkgeglkeglewlse 173
                   Rlee++  L+ +l+++e + v+ll+laNKqD ++++++  ++e l  + ++     + r+  + + sa++g+g+ e+++w+  
  CCE31149.1 135 ngRLEECRLVLEDVLQHSETEGVPLLILANKQDREDCVETIRIKEGLVKKVMEgdkasSIRDSRVLSLSALTGDGVREAIDWVRT 219
                 45*******************************************9999887766665788899999***************975 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.3e-06    0.0096      23      58 ..      39      74 ..      33      87 .. 0.82
   2 !   29.4   0.0   1.9e-10   4.3e-07     187     280 ..      76     167 ..      71     169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.3e-06
                EEEEEEEESTTSSHHHHHHHHHHHCS----HHHHHC CS
     G-alpha 23 evkllllGqseSGKsTilkqlkllykkgfseeelat 58
                e++++llG +  GK+T+++q+k +y ++  e +l+t
  CCE31149.1 39 EYSVILLGLDNAGKTTFHEQVKSMYLPHAPEPKLKT 74
                6789*********************99877776666 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 1.9e-10
                 ---SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HH CS
     G-alpha 187 ktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlD 280
                 +tvG +  ++ +  ++ ++++dvgGq s r+ W +++ +  ai+F++   ++      d+   rlee   + ++++++++ + +p++++ nK D
  CCE31149.1  76 PTVGQNVSTITLP-DMYLKLWDVGGQLSLRNLWQSYYASCHAIVFIIDSTDIGDGTLGDD-NGRLEECRLVLEDVLQHSETEGVPLLILANKQD 167
                 5666666666665.78899*********************************66555554.49*****************************99 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   1.4e-11   3.2e-08       2     119 ..      42     167 ..      41     168 .. 0.63

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.4e-11
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTT.EEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE.........GH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstig.vdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd.........sr 90 
                 v+l+G  ++GKt++ +++ +    +  ++ +  v ++ ++   ++++    ++ ++ l++WD++Gq   r+l ++y+ + +++++++d           
  CCE31149.1  42 VILLGLDNAGKTTFHEQVKSMYLPHAPEPKLKtVPTVGQN---VSTI----TLPDMYLKLWDVGGQLSLRNLWQSYYASCHAIVFIIDstdigdgtlG- 132
                 79*************9998877755544433202222232...3333....234688******************************93333322220. PP

                 HH.....HCHHHHHHHHHHHCSSS..-EEEEEE-TT CS
         Roc  91 ss.....enlkeWlkelkkvagks..pvilvgnkiD 119
                  +     e+ +  l+++ ++++++  p+++++nk D
  CCE31149.1 133 -DdngrlEECRLVLEDVLQHSETEgvPLLILANKQD 167
                 .11111233445666666665543336667777766 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   9.8e-12   2.2e-08       2     124 ..      42     169 ..      41     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 9.8e-12
   Gtr1_RagA   2 vLLmGksgsGKtsmrsiiFdnylard...tlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDve......srel 91 
                 v+L+G  ++GKt+ ++ + + yl++     l+   t+  + s++ +l  ++l+lwD+gGq ++ +       ++ + ++ ++++++D++        + 
  CCE31149.1  42 VILLGLDNAGKTTFHEQVKSMYLPHApepKLKTVPTVGQNVSTI-TLPDMYLKLWDVGGQLSLRNLW-----QSYYASCHAIVFIIDSTdigdgtLGDD 134
                 89********************9986212455666778888888.7899***********9876654.....67899**********995543321245 PP

   Gtr1_RagA  92 eedletlkeilealrqyspeakvfvli..hKmDli 124
                 +  le+ + +le + q+s+   v  li  +K D  
  CCE31149.1 135 NGRLEECRLVLEDVLQHSETEGVPLLIlaNKQDRE 169
                 66677777788999999887666554422677765 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   2.9e-11   6.4e-08       2     158 ..      42     219 ..      41     222 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 2.9e-11
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTT...TSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTB.........HHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyes...TigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvydits.........resfe 88 
                 ++l+G  + GKt++  +  + + ++  e+   T+     ++  ++   ++ l++wD  Gq   ++l ++yy ++++i+ + d t+         +  +e
  CCE31149.1  42 VILLGLDNAGKTTFHEQVKSMYLPHAPEPklkTV-PTVGQNVSTITLPDMYLKLWDVGGQLSLRNLWQSYYASCHAIVFIIDSTDigdgtlgddNGRLE 139
                 7999*********988877666655444311144.3334444455567899************************99998876532222222226689* PP

                 THHHHHHHHHHHST.TTSEEEEEEETTTGGG........G-SS-HH.HHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHH CS
         Ras  89 nvkkwveeikrvae.envpivLvGnKvDlee........kravste.egeelakelg.lkfletSAktnenveeafeellr 158
                 +++  +e++ ++ e e vp+++++nK D e+        +  v++  eg + a+++   + l  SA t  +v+ea++ + +
  CCE31149.1 140 ECRLVLEDVLQHSEtEGVPLLILANKQDREDcvetirikEGLVKKVmEGDK-ASSIRdSRVLSLSALTGDGVREAIDWVRT 219
                 ************99899***************9999998555654414444.44444499999***********9987765 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0     6e-11   1.4e-07       5     142 ..      41     186 ..      38     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 6e-11
                 EEEEE-STTSSHHHHHHHHHHS.......S---B---S.S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETT.S....... CS
       SRPRB   5 avllvGlsdsGKTslftrLttd.......svkktvtSq.essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDSt.i....... 87 
                 +v+l+Gl ++GKT++ +++ +         + ktv  + ++ ++  +    +  l+l D+ G+ +lr+ l ++  + +s +++vf++DSt i       
  CCE31149.1  41 SVILLGLDNAGKTTFHEQVKSMylphapePKLKTVPTVgQNVSTITL---PDMYLKLWDVGGQLSLRN-LWQS--YYASCHAIVFIIDSTdIgdgtlgd 133
                 79***************999988888887777888888677777777...99**************96.7777..7999**********9533333333 PP

                 -HHHHHHHHHHHHHHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHHHHHHH CS
       SRPRB  88 dpkevkevAEllyeilliteklkdavdiliACnKqelflakspklikdaLEkEln 142
                 d+ +++e    l ++l ++e   ++v++li  nKq+     +   ik+ L k + 
  CCE31149.1 134 DNGRLEECRLVLEDVLQHSE--TEGVPLLILANKQDREDCVETIRIKEGLVKKVM 186
                 56678888888999999888..89************9999999999999977654 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.1e-07    0.0007       2     114 .]      42     165 ..      41     165 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.1e-07
                 EEEEESTTSSHHHHHHHHHT.....S.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT....... CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg.....e.kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdas....... 86 
                 v+++G  N+GK+t+  +        + + + +  p + +++ ++++   +  ++l+D+ G ++       l++ +++    +++i++++d++       
  CCE31149.1  42 VILLGLDNAGKTTFHEQVKSmylphApEPKLKTVPTVGQNVSTITLP--DMYLKLWDVGGQLS-------LRNLWQSYYAsCHAIVFIIDSTdigdgtl 131
                 899*************9987444322345666666666666666665..889********554.......666666655548********779988888 PP

                 ......TTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  87 ......eeklkpldeeleelleeakkplilvlnk 114
                        e+ + + e++ +  e ++ pl++++nk
  CCE31149.1 132 gddngrLEECRLVLEDVLQHSETEGVPLLILANK 165
                 7764442234444555555555588888888887 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.43   9.5e+02       9      22 ..      45      58 ..      40      68 .. 0.78
   2 !   15.7   0.0   3.8e-06    0.0085     107     189 ..     141     218 ..      77     222 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.43
                EESTTSSHHHHHHH CS
    GTP_EFTU  9 ighvDhGKtTLtdr 22
                +g  ++GKtT+ ++
  CCE31149.1 45 LGLDNAGKTTFHEQ 58
                555689****9887 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 3.8e-06
                 STHHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHH CS
    GTP_EFTU 107 vepqteevlrlalkegvpiivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealv 189
                      e vl++  +egvp+ ++ NK Dr    e  +i+e + +k+      +e  ++++ ++  v+  Sal+g+gv++ ++ + 
  CCE31149.1 141 CRLVLEDVLQHSETEGVPLLILANKQDREdCVETIRIKEGLVKKV------MEGDKASSIRDSRVLSLSALTGDGVREAIDWVR 218
                 55667899********************97688888999999888......3333333334569************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1607.49
//
Query:       CCE31150.1  [L=650]
Description: probable NA+-H+ antiporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-72  242.1  42.5      1e-71  241.8  42.5    1.0  1  Na_H_Exchanger  Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.8  42.5   5.6e-76     1e-71       2     380 ..      43     453 ..      40     454 .. 0.91

  Alignments for each domain:
  == domain 1  score: 241.8 bits;  conditional E-value: 5.6e-76
                     HHHHHHHHHHHHH.HHHTT.SXHHHHHHHHHHHHTTTTTS...........HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHH CS
  Na_H_Exchanger   2 vllillallvgll.arrlk.lpeivgliiaGlllGpsglglieps......eedlevlselglilllFlaGleldlrelrknlksilllallgvl 88 
                      lli++ +++++l  +++  ++e+v+ i+aG+ +G+++    + +      ++d +++++l+l+++++ +G+el+ +++++n ++il +a++g++
      CCE31150.1  43 MLLIAAFFTSYMLqIKKVTaIHETVISIFAGMTVGLILIV-TSGDsirnliNFDYQIFFNLLLPPIILSSGYELHQANFFRNMGTILTFAFAGTF 136
                     34455444444477888888*****************998.222257777********************************************* PP

                     HHHHHHHHHHH.H....HTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTX..XXXXTSSSTS CS
  Na_H_Exchanger  89 itvvliGlllyll....lilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalak..eeaggetsll 177
                     +++v+iGl+ly++    + l++++++a+ +ga lsatdpv++lai+ +  +v+ +l+t+++ges+lnDa+a+v++  ++++ k   +  g  s +
      CCE31150.1 137 LSAVVIGLILYVFalipGSLKMSFVDAISVGATLSATDPVTILAIF-NTYKVDPKLYTIIFGESILNDAIAIVIFETAQKYNKgeASSYGILSFF 230
                     ***********99**99999**************************.**********************************98776667788888 PP

                     XHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHH...HHHHHH. CS
  Na_H_Exchanger 178 lllliflvvavgglllglvigwllrlitrft..dddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnklsek...lesfre. 266
                      + +ifl+v++ +ll+g+v+g+ ++l+++ft  ++  ++e +l++l+a++++++++ +++sgi+  +++G++l++y++ n +s +   + +f+  
      CCE31150.1 231 EATGIFLLVFFTSLLIGVVVGVGTALLLKFTylRRYTKIESCLIFLIAYATYFFSHGIHLSGIVSLLFCGITLKHYAYFN-MSRRtqlTTKFIFq 324
                     **************************************************************************999999.55555674444444 PP

                     ...HHHHHHHHHHHHHHSXHHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTX.................SSXHHHHHHCCCCSS.BHHHHHH CS
  Na_H_Exchanger 267 ...glfnplfFvlvGlsldlkvlnnhlsvlilvllilvaillgrilavflllrll.................glslrealiigfgglqrgavala 341
                        +l ++++F+++Gl l+        + ++l++++++a+ ++r +avf+l++++                  l+ + +++++++gl rgav +a
      CCE31150.1 325 itsQLSENFIFIYLGLALFTDNA--LSFEPPLIIVTILAVCAARWVAVFPLSKAInwfiryrarrrglevgdELPYNYQAMLFWAGL-RGAVGVA 416
                     666****************5544..599*******************************************99**************.******* PP

                     HHHHHHHHXHHHHTTSSTTTCSTSXHHHHHHHHHHHHHH CS
  Na_H_Exchanger 342 laalgpalgllarelyallivvvlftvlvqGlslkpllk 380
                     laal++ +  +a  l a+++vvv++tv+++G++++ +l+
      CCE31150.1 417 LAALLTGE--NAYPLRATVLVVVVLTVIIFGGTTARMLE 453
                     ********..6667*********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1133  (0.0631937); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 4845.44
//
Query:       CCE31151.1  [L=1628]
Description: related to chromatin modification-related protein vid21 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-14   52.3   0.3    5.4e-14   52.3   0.3    4.7  4  HSA              HSA
    5.6e-14   52.1   0.5    1.8e-13   50.5   0.5    2.0  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
    0.00037   20.6   0.3    0.00096   19.3   0.3    1.7  1  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> HSA  HSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.3   9.1e-18   5.4e-14       3      51 ..     633     680 ..     631     690 .. 0.90
   2 ?    2.4   1.4     0.032   1.9e+02       5      33 ..    1084    1112 ..    1082    1128 .. 0.81
   3 ?  -11.5  14.8         3   1.8e+04       8      30 ..    1365    1387 ..    1342    1399 .. 0.59
   4 ?   -7.5   9.0         3   1.8e+04       9      38 ..    1561    1590 ..    1556    1599 .. 0.48

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 9.1e-18
                 XXXXXXX--HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--X CS
         HSA   3 eperrqkthhdylLeeilwhakdfkeerkskrakakklaravakyhnni 51 
                 ep r + +++d+lL+e++w+++df+eerk+k+a a+kla a+a +h+  
  CCE31151.1 633 EPTR-PPAQWDVLLKEMKWMRTDFREERKWKMALARKLAYACAEWHEAS 680
                 7778.99***************************************975 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.032
                  XXXXX--HHHHHHHTTHHHHHHHHHHHHH CS
         HSA    5 errqkthhdylLeeilwhakdfkeerksk 33  
                  err++++h  l++++  +ak    + + +
  CCE31151.1 1084 ERRRNQKHLTLIDAMRKLAKKRETTVQKQ 1112
                  8999************9999765555444 PP

  == domain 3  score: -11.5 bits;  conditional E-value: 3
                  XX--HHHHHHHTTHHHHHHHHHH CS
         HSA    8 qkthhdylLeeilwhakdfkeer 30  
                  q++h+++  ++ ++h+ + ++ +
  CCE31151.1 1365 QQQHQQHQQQQQQHHQHQQHQQH 1387
                  44444444444444444444444 PP

  == domain 4  score: -7.5 bits;  conditional E-value: 3
                  X--HHHHHHHTTHHHHHHHHHHHHHHHHHH CS
         HSA    9 kthhdylLeeilwhakdfkeerkskrakak 38  
                  ++++++ +++  + a++ +++++  ++ a+
  CCE31151.1 1561 QQQQQAAIQQQAQQAQQAQQAQQKAAQAAQ 1590
                  444444444444444444444444433333 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.5     3e-17   1.8e-13       1      57 [.     974    1042 ..     974    1045 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 3e-17
  Myb_DNA-bind_6    1 WteeEdeiLlklvekygndWknIaealn..........rRtpkqcfdrwkn..kLrpkisrkkwskeed 57  
                      Wt+ Ed++L+ lv++y+++W++I+++ +          rR+p++cf+rw++  +L++++++++++k++ 
      CCE31151.1  974 WTVVEDDELRGLVREYSYNWSLISSMVStksrfqsaaeRRSPWECFERWISleGLPSDMQKTQYFKAYN 1042
                      **************************9889*********************9999**********9876 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3   1.6e-07   0.00096       2      43 ..     972    1023 ..     971    1025 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.6e-07
                       SSSBHHHHHHHHHHHHHHTTCHHHHHHHHTS..........S-HHHHHHHHH CS
  Myb_DNA-binding    2 gkWteeEdelLleavkkhGnrWkkIaerlgg..........Rtekqcrsrwr 43  
                       ++Wt  Ed+ L  +v+++  +W++I++++ +          R++ +c +rw 
       CCE31151.1  972 SQWTVVEDDELRGLVREYSYNWSLISSMVSTksrfqsaaerRSPWECFERWI 1023
                       68****************************8778888888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4124  (0.230018); expected 358.6 (0.02)
Passed bias filter:                      783  (0.0436723); expected 358.6 (0.02)
Passed Vit filter:                       296  (0.0165096); expected 17.9 (0.001)
Passed Fwd filter:                       126  (0.00702772); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.43u 0.37s 00:00:02.80 Elapsed: 00:00:00.59
# Mc/sec: 8322.71
//
Query:       CCE31152.1  [L=388]
Description: uncharacterized protein CPUR_05003 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-19   67.3   0.6    9.4e-19   67.3   0.6    2.7  2  G-patch_2   G-patch domain
  ------ inclusion threshold ------
        0.2   11.3   9.6       0.43   10.2   9.6    1.5  1  Spt20       Spt20 family


Domain annotation for each model (and alignments):
>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.6     1e-22   9.4e-19       3      60 ..     241     291 ..     239     292 .. 0.91
   2 ?   -2.8   0.8      0.79   7.1e+03      27      46 ..     300     319 ..     300     342 .. 0.57

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 1e-22
   G-patch_2   3 easleeyeevPVeeFGaAlLrGMGWkegqgigknkkgrvkpeepkrRpgrlGLGakpa 60 
                 +++le+ye++PVeeFGaAlLrGMGW+ g++ g +       ++++rRp rlGLGa+++
  CCE31152.1 241 ASTLEDYEAMPVEEFGAALLRGMGWN-GEPTGPK------VKQVRRRPNRLGLGAEEL 291
                 6899**********************.8888988......5789***********975 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.79
   G-patch_2  27 Wkegqgigknkkgrvkpeep 46 
                 W+++ ++gk+     + + +
  CCE31152.1 300 WNQKGTKGKSRPRLADYRRE 319
                 66555555554333333333 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   9.6   4.8e-05      0.43      92     164 ..     102     191 ..      95     203 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4.8e-05
       Spt20  92 rDhrnsvaqsqktq...dqkqsq.qnqqqqqqqqqqqqqqqq...............qqeqqqqqnekdsttteekekksksknnssksktt 164
                 rD r+  + +++++   +++++q qn ++q+++++q+ q++                +  +++++++ ++   + k+ ++ +k+++++s++ 
  CCE31152.1 102 RDWRSELKAQRRSKnllPEEAQQrQNDHIQNSSSAQNRQSNPaepddglkwgltiaaE--KKADADQGATDDCDGKDAEQTQKAQKQTSASA 191
                 799999999999889996666666***************9999***********9663..33333333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1211  (0.0675442); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 2668.75
//
Query:       CCE31153.1  [L=635]
Description: uncharacterized protein CPUR_05004 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-87  293.3   0.0    5.2e-87  292.8   0.0    1.0  1  Kinetochor_Ybp2  Uncharacterised protein family, YAP/Alf4/glo


Domain annotation for each model (and alignments):
>> Kinetochor_Ybp2  Uncharacterised protein family, YAP/Alf4/glomulin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.8   0.0   2.9e-91   5.2e-87       8     614 ..      17     605 ..      11     626 .. 0.90

  Alignments for each domain:
  == domain 1  score: 292.8 bits;  conditional E-value: 2.9e-91
                      HS-------THHHHHHHHHHHHHHT.........SS-SHHHHCCCTSTHHHHHHTGGGGHHHHHHHHHTS---SSSTHHHHHHHHHHHHCS-HH CS
  Kinetochor_Ybp2   8 ktlveeappatDyltyltllelyleevnysieekeellpeLlelLqdnkeltkeIGWDLpklLlkflpksnvedklvklvmecledlArlGNPk 101
                      + l + +pp tD +tylt+++           +++++lp+L+++Lqd   lt+ IGWDL+++L+  +p s+           cle +ArlGNP+
       CCE31153.1  17 QRLRDSRPPVTDKFTYLTIIDE---------SLSPDILPTLHDILQD-VTLTSDIGWDLVEMLI-SVPGSE----------GCLESIARLGNPR 89 
                      5566789***************.........899*************.****************.9*****..........************* PP

                      HHHHHHHGGGTS--C..............CHHHHHHHH....HHHHHHHHHHHSSS-CHH..HHHHHHHHHHHHCCS-------S-SS-HHHHH CS
  Kinetochor_Ybp2 102 EllLkvcElLselsveDedseeddesikkkensvpfelkfyvLlellssllkRiqtkyPsrFLatalsailnavtnlpseetledlefvlrrvy 195
                      E++Lkv+  ++  s      e  + + ++++n+      f +L  +l +l+kR+q k PsrFL t+l+++++ + + + e t++++ ++ + v+
       CCE31153.1  90 EVILKVLHVMEATSG----AEGGEGEGGSGTNK----A-FVTLCGMLGILHKRLQVKAPSRFLHTTLDTVYRSYDPTHAESTAAVISLL-QSVS 173
                      *************99....44443344455665....3.5568***********************************88888888888.**** PP

                      HHHHHH.........................HHHHHS-S---HHHHH..HHHHHHHHHHHHHHHHHH...................H------- CS
  Kinetochor_Ybp2 196 tfkrpylpprkps..............sapdpeasseelskikedEsalqrklLqsfltqllksyllnpgvswavrlf....pelqqsgrlsee 271
                        krp lp+r++s              ++ +p+ ++++++k + +Es++ + lLqsf+t++++ +++ ++ +wa+r++    p+++++g+++ +
       CCE31153.1 174 AQKRPPLPTRQSStvlgtpmhnaagdaAESAPDPEADMSDKPNAEESEIANHLLQSFITCVFEAFVNANDLEWASRMLeytyPQRIVPGKKTMM 267
                      ***************************55566666666677799************************************************** PP

                      ------HHHHHHHHHHHHHHHSSS-CCC---------.--------...................----TTTHHHHHHHHHHTT-TTCCS-S-- CS
  Kinetochor_Ybp2 272 dafeedeelserdtilgrlvalatsfDidlsdellkl.ikesrkiyesllkdveat.edeavpllfeevpkdaeasytyslfkaaaekeiplsr 363
                      +af+e+++l+++d+ +g+l+a a   D+++++    +   e+++i+       ea    ++++ +f+    +                +i+ls+
       CCE31153.1 268 QAFNEESDLRAKDALAGQLAAVA--GDLGFTN----MaYPELQSIL-------EAPiTRDPLSIDFDPS--KIN--------------DIKLSS 332
                      ***********************..******8....5588888888.......3333555555555555..666..............9***** PP

                      -HHHHHHHHHH....................HHHHHHT--.....SHHHHHHHHHHHHHHHCTS-TT-B-......GGGGGSHHHHHHHHHHHH CS
  Kinetochor_Ybp2 364 sGiLlLltaryae....nsghllp.kisfpDaielllrfvtpslesatfqnkgledvllyllwvalestst....elkelpekvlkaflqalll 448
                       G+L L ++++++    +  ++ p +  fp + +ll + + ++++s++    g+  +l+ l ++ + ++ +    + ++  ++ ++ + ++++l
       CCE31153.1 333 GGLLCLVAYWVFAadvfDAHQPRPaMYMFPHHHSLLEHYIGQDSQSEVAIHPGTMEALVVLAVWLDGQNRIaaggSRSPDAKDNYMPYHHLITL 426
                      *************9*9988888889***************88888888888888888888888888888856999888888999********** PP

                      HHHH-S-HHHHHHHHHHHHHHHHHB-HHH.HHHHHHHHHHHC--HHHHHHHHHHHHHHHHCT----...................----TTTSH CS
  Kinetochor_Ybp2 449 itarqpspelrkitltlltrlLhlspedv.rfkfIrdtLencpyesvkaaaigilKdlmlkaskssqaselee..........asrtniflnpe 531
                      i++ +p+  +r+++  + +++Lh++p++  r+ ++ d+Lenc + s++a+a+ +l++++l+a+k++ + +l            +++++ f +p+
       CCE31153.1 427 ISVFHPNVRVRNASTVVAGTILHSNPDEDdRLSILEDLLENCMFSSLQACAVSWLREEILAAHKNAPPPSLTPfssssappspPKNNSRFRSPD 520
                      ***************************999************************************8877766*********999999****** PP

                      HHHHHHHHHS--TTT........TTS-TTTTHHHHHHHHHHHHHHHHHS-TTTSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHHH CS
  Kinetochor_Ybp2 532 rlsellslvlnaleellasse..nktllqenldlilaaLNllvvlkkkwdlevlqlkkelekfekeyleplktllnsseaeleae 614
                       +++++  ++++l++l + +     ++  e ++++l+  N+  +l ++++  +l++  + +++e +y++pl ++  ++++ le+ 
       CCE31153.1 521 CFETIQYTLFPSLTHLQDADLdtLLEFWAEGSPFHLQVANFALFLFSSPTYSRLAPAGMAAAIEHRYVQPLMQVATRIMDALEEG 605
                      ***************7655558977777889*******************666**************************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4560.51
//
Query:       CCE31154.1  [L=1118]
Description: probable DNA polymerase gamma [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.4e-103  346.0   0.0   2.3e-103  345.2   0.0    1.4  1  DNApol_Exo      DNA mitochondrial polymerase exonuclease doma
    1.2e-59  202.3   0.0    1.9e-59  201.6   0.0    1.2  1  DNA_pol_A       DNA polymerase family A
     0.0099   15.6   0.3        0.1   12.3   0.3    2.3  1  DNA_pol_A_exo1  3'-5' exonuclease


Domain annotation for each model (and alignments):
>> DNApol_Exo  DNA mitochondrial polymerase exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.2   0.0  3.9e-107  2.3e-103       3     282 .]      99     370 ..      97     370 .. 0.95

  Alignments for each domain:
  == domain 1  score: 345.2 bits;  conditional E-value: 3.9e-107
  DNApol_Exo   3 vefklPkLegenieeHfrklgekqaepylslaeelaeaelpeipekwalksGWtrYekdksaesvdyPeeealvfDvevlvkesklpvlAvavsekaWY 101
                 + f+lP+Leg++++eHf+klg++ +epyl la+++a a++p++p++w+ +sGWt+Y +++++e+vd+Pee++l+fD+evl+ke++++++A+a s++aWY
  CCE31154.1  99 IAFDLPRLEGRTLDEHFYKLGSDASEPYLALAKTFAGADCPPKPTTWVRRSGWTKYYPEGQSEAVDAPEEDMLCFDTEVLYKENPFAIMACASSPTAWY 197
                 78************************************************************************************************* PP

  DNApol_Exo 102 sWvSprlleeseeeeklelkeLiplesskkervvvGhnvsyDRarikeeYslessktrflDTmsLhvavsGltsqqralwlkarkekkkkekaaeeeee 200
                 +W+Sp+ll+e++     + ++Lipl++++k+r++vGhnv++DRari+eeY++++s+++flDTmsLh av+G++s+qr++w+k+rk+++ +e++  +++e
  CCE31154.1 198 AWLSPWLLGETT-----NERQLIPLGDPTKHRIIVGHNVGFDRARILEEYNIKQSNNAFLDTMSLHAAVNGMCSRQRPTWMKYRKNRELAERSGITRDE 291
                 ***********9.....89*******************************************************************9988866655443 PP

  DNApol_Exo 201 eeekkeeeseeeekewkevsslnsLadvaklycgieldKekrdlfvketleeirenfqelleYcakDveathevfkkllpkF 282
                     +e  +ee+e+ w e+ss+nsL+dvak++++ +++K++r+ f + + + i +++++ll+Yca+Dv +th++++ ++p+F
  CCE31154.1 292 I---AELYEEEDEELWLERSSVNSLRDVAKFHLNVSMEKTTRNDFGELDRDGILAKLDSLLDYCANDVDVTHRIYQIVFPNF 370
                 3...33344556678*****************************************************************99 PP

>> DNA_pol_A  DNA polymerase family A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.6   0.0   3.2e-63   1.9e-59      70     371 ..     571     936 ..     554     938 .. 0.90

  Alignments for each domain:
  == domain 1  score: 201.6 bits;  conditional E-value: 3.2e-63
                 .CHHHHHHHHHHHHHHHHHT..TTTGGGCC.....BTT.TSEE--EEE..........SSSSSSSS-EEESS-GGGS-TTS..............CCHH CS
   DNA_pol_A  70 hplaklileyrelsklksty..vdallkli.....nkk.tgrihtsfn..........qtvtatGrlsssepnlqnipirt..............eegr 136
                 +p+ak +l+y+e + l+s+y  ++++l+++     + + ++ri+++++          +++++ G ++++ +++++i  r+                g 
  CCE31154.1 571 NPMAKSYLSYFEKGILSSEYayAKEALEMNsscsyWISaRDRIMSQMVvyksdlnateRKEEEDGFILPQIIPMGTITRRSvektwltasnakknRVGS 669
                 799***************8777999****9*****888799****************99999***************7455777777776543334444 PP

                 HHHHTBCG.TTCCEEEEEEETTHHHHHHHHHCT.HHHH....HHH.........HTTH-HHHHHHHHHCTS.GGGHHHHHHHHHHHHHHHHHTT--HHH CS
   DNA_pol_A 137 riRkafvaeegghvllsaDysqiELRilAhlsgdekli....eaf.........kegeDiHsktAsevfgvpveevtkeqRrqaKainfGiiYGagakg 222
                 +++++++a++g++ +++aD++++EL+i A+l+gd+++     +a+         +eg+D+Hs+tAs ++++         R++aK++n+G+iYGag k+
  CCE31154.1 670 ELKAMVKAPDGYC-FVGADVDSQELWI-ASLVGDSTFKlhggNAIgfmtlegvkAEGTDMHSRTASILGIT---------RNDAKVFNYGRIYGAGLKF 757
                 77********776.*************.**********999966677788888566************999.........******************* PP

                 HHHHHT.....SSHHHHHHHHHHHHHHSHHHH.................HHHHHHHHHCCCE.CCEEETTCSEEEECTTT-CCHCCCHHHHHHHHHHHH CS
   DNA_pol_A 223 Laeqlg.....iseeeAkefiekyferypgvk.................syleetleeakek.gyvetllgrrrylpeiksknaalrekaeraavNapi 298
                 +a+ l+     +se++A+e++ +++++++g k                 s+++++lee++e+ ++++ +lg  ++   + s+n + r    ++++N++i
  CCE31154.1 758 AATLLRqfnpeLSEKQANEIAGRLYANTKGTKtnrrpihprpfwrggteSFVFNKLEEFAEQeRPRTFVLGAGITE-ALMSRNLSSRGGYLTSRINWAI 855
                 *****4455669*******************99************************999998999999**99988.99******************** PP

                 HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEETTEEEEEEECCCHHHHH......HHHHHHHHHHHHS...SS--EEEEEEE CS
   DNA_pol_A 299 QGsAaDiiklamikieealkeeklkarlllqvHDElvfevpeeeveeva......elvkeamesavel...dvplkvevkvG 371
                 Q+s++D+++l++++++ ++++++++arl l+vHDE+++ v+ e+++++a      +l+++am  ++++   d+p++++++++
  CCE31154.1 856 QSSGVDYLHLLVVSMDFLVRRYNINARLALTVHDEIRYVVKAEDKYRAAmalqvaNLWTRAM-FSQQVgidDLPQSCAFFSA 936
                 ************************************************999***********.3333245699**9999875 PP

>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.3   1.7e-05       0.1      79     170 ..     225     365 ..     216     369 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
                     EEEESSHHHHHHHHHHHHTS--SS..EEEH.HHHHHHTTHSTT...........................................SSHHHHHHH CS
  DNA_pol_A_exo1  79 tkvghnakfDlevlardfgielen..lfdt.mlaayvldyers...........................................hsLdsLaek 127
                     ++vghn  fD++ + +++ i+ +n  + dt +l a+v++  +                                             sL + a+ 
      CCE31154.1 225 IIVGHNVGFDRARILEEYNIKQSNnaFLDTmSLHAAVNGMCSRqrptwmkyrknrelaersgitrdeiaelyeeedeelwlerssvNSLRDVAKF 319
                     67888888888777777666665422456655666666654445778888888888888888888888888888888888888888888888888 PP

                     HHSB---GHCCTTSSTTT....SSS-HHHHHHHHHHHHHTHHHHHHH CS
  DNA_pol_A_exo1 128 ylgdleldkeeqiakwqk....arplleeqllYAaeDadvllrlfkk 170
                      l+ + ++k+   + +        ++l++ l Y+a+D+dv++r+++ 
      CCE31154.1 320 HLN-VSMEKTTRNDFGELdrdgILAKLDSLLDYCANDVDVTHRIYQI 365
                     888.6666665544444355889999*******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 7674.48
//
Query:       CCE31155.1  [L=812]
Description: related to putative venom metalloproteinase jararhagin precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-56  189.2   4.9    8.4e-56  189.2   4.9    1.9  2  Reprolysin_5     Metallo-peptidase family M12
    9.8e-48  162.6   1.8    2.3e-47  161.4   1.8    1.6  1  Reprolysin_2     Metallo-peptidase family M12B Reprolysin-lik
    3.3e-43  147.7   2.4    5.5e-43  147.0   2.4    1.4  1  Reprolysin_4     Metallo-peptidase family M12B Reprolysin-lik
    1.7e-16   60.7  32.8    1.7e-16   60.7  32.8    4.6  4  Disintegrin      Disintegrin
    1.7e-10   41.5   0.2    5.2e-10   39.9   0.2    1.9  1  Reprolysin_3     Metallo-peptidase family M12B Reprolysin-lik
    0.00018   21.9  13.9    0.00018   21.9  13.9    4.4  2  ADAM_CR_2        ADAM cysteine-rich domain
  ------ inclusion threshold ------
      0.021   15.0   0.0      0.041   14.1   0.0    1.4  1  Pep_M12B_propep  Reprolysin family propeptide
       0.19   11.2   0.1       0.34   10.4   0.1    1.3  1  SieB             Super-infection exclusion protein B
       0.27   11.1   0.6       0.79    9.6   0.0    1.9  2  LapA_dom         Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> Reprolysin_5  Metallo-peptidase family M12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.2   4.9   4.2e-59   8.4e-56       2     196 .]     274     485 ..     273     485 .. 0.95
   2 ?   -8.1   5.9         9   1.8e+04     176     187 ..     552     563 ..     532     599 .. 0.59

  Alignments for each domain:
  == domain 1  score: 189.2 bits;  conditional E-value: 4.2e-59
  Reprolysin_5   2 trtvall.vaaDcsfvaafggdaaaqanivnlvnrasnvyeresnislglanvtildeedpstase.......asstgdaselLnefqsassalrgq 90 
                   t++val+ +++Dc++++af++++++++ iv +vn+as+vye++++isl ++n+ti d+ +  +a++       ++ + ++s++Ln f    s++rg+
    CCE31155.1 274 TKKVALVgIVTDCNYFSAFNSTSEIKKHIVGVVNKASEVYESTFKISLAIKNLTIIDRGCAGSAPAntawnvrCGDDVTISDRLNTF----SQWRGD 366
                   689****************88449*************************************999999********************....****** PP

  Reprolysin_5  91 qnddlailflmtnfsgg..vGlAwlgqlcnsgsagsvstrveks....nsvvvstatevqvvaHElGHnfGavHDcdsss.......esqsCslsns 174
                   ++dd+a+++l t++ ++  vGlAw g  c sg++ s +++ ++     ++vvv+++te+q++aHE GH+fGavHDc  ++       ++++C+ls+s
    CCE31155.1 367 SKDDNAYWTLFTTCATQtaVGLAWRGMACRSGAGNSKDSSGNNEtvaaTNVVVRADTEWQIFAHESGHTFGAVHDCSEQAcpvaggsSQACCPLSTS 463
                   ****************99***********9999777776655557789******************************99***************** PP

  Reprolysin_5 175 tepaggryiMapssspnstdfS 196
                    ++aggryiM+ps+++++t+fS
    CCE31155.1 464 QCDAGGRYIMNPSTGRGITSFS 485
                   *********************9 PP

  == domain 2  score: -8.1 bits;  conditional E-value: 9
  Reprolysin_5 176 epaggryiMaps 187
                   ++   +++  ps
    CCE31155.1 552 CKFTTNSMCDPS 563
                   333333332222 PP

>> Reprolysin_2  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   1.8   1.2e-50   2.3e-47       3     192 ..     297     496 ..     295     498 .. 0.90

  Alignments for each domain:
  == domain 1  score: 161.4 bits;  conditional E-value: 1.2e-50
  Reprolysin_2   3 avteelvnvlnrvnqiYeeddinislrlrn....eaeieatteasdsgnnycnssttevrrlnllsqlegekdydlahlvllgtf.sggvlGLayvg 94 
                   ++++ +v v+n+++++Ye  +++isl ++n       +   ++a  ++n++c  + t++ rln +sq++g++++d+a+++l +t+ ++  +GLa+ g
    CCE31155.1 297 EIKKHIVGVVNKASEVYE-STFKISLAIKNltiiDRGCAGSAPANTAWNVRCGDDVTISDRLNTFSQWRGDSKDDNAYWTLFTTCaTQTAVGLAWRG 392
                   57899*************.**********9998777899********************************************************** PP

  Reprolysin_2  95 qicqkeassrktntg.lsttansgsaveetkeidvvaHEvGHaFGatHdndgs.......sasegveenaatsvedaggkfiMapasksnndlFSpc 183
                     c  +a++ k ++g   t+a ++  v+ ++e++++aHE GH+FGa+Hd+  +       s + +++    ts +dagg++iM+p+  ++++ FSpc
    CCE31155.1 393 MACRSGAGNSKDSSGnNETVAATNVVVRADTEWQIFAHESGHTFGAVHDCSEQacpvaggSSQACCPLS--TSQCDAGGRYIMNPSTGRGITSFSPC 487
                   *********99888833457778888888*********************9878887766444455554..456*********************** PP

  Reprolysin_2 184 sislisdvl 192
                   si++i++ l
    CCE31155.1 488 SIGNICSGL 496
                   ******875 PP

>> Reprolysin_4  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0   2.4   2.8e-46   5.5e-43       1     196 [.     274     497 ..     274     504 .. 0.88

  Alignments for each domain:
  == domain 1  score: 147.0 bits;  conditional E-value: 2.8e-46
  Reprolysin_4   1 tvrvvrvavavdpeyvaelgsvdevraainalvtvlnevYgrdlnvrLeli....sdqdviytdsetdsfaadisgedlgnsslatltstrdskdyD 93 
                   t++v++v++ +d++y   ++s  e+++ i  +v+ ++evY++++ ++L++      d+ +  + +  + ++  +  +     +l+t+ ++r+  ++D
    CCE31155.1 274 TKKVALVGIVTDCNYFSAFNSTSEIKKHIVGVVNKASEVYESTFKISLAIKnltiIDRGCAGSAPANTAWNVRCGDDVTISDRLNTFSQWRGDSKDD 370
                   789**********************************************9888789**************9999777777899************** PP

  Reprolysin_4  94 laallrdtr.asqqnvgvawvgalcls.arqnkkasgvaas..........rdeydifAHEiGHtfGaaHdls...........degeglsskteeg 167
                   +a++++ t  a q +vg+aw g +c s a ++k +sg  ++            e++ifAHE+GHtfGa+Hd+s           + +++ls + +++
    CCE31155.1 371 NAYWTLFTTcATQTAVGLAWRGMACRSgAGNSKDSSGNNETvaatnvvvraDTEWQIFAHESGHTFGAVHDCSeqacpvaggssQACCPLSTSQCDA 467
                   ******999899999**********9985566655554444444355655344*****************************999999********* PP

  Reprolysin_4 168 sgqtIMsyaseasqeafapisirli.avsi 196
                    g +IM++      + f+p+si +i +++ 
    CCE31155.1 468 GGRYIMNPSTGRGITSFSPCSIGNIcSGLR 497
                   *********99999********99944444 PP

>> Disintegrin  Disintegrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   4.6       1.5     3e+03      19      68 ..     442     495 ..     429     508 .. 0.47
   2 !   60.7  32.8   8.7e-20   1.7e-16       1      76 []     528     604 ..     528     604 .. 0.96
   3 ?   -1.6   8.8       2.5     5e+03      30      62 ..     617     650 ..     607     661 .. 0.66
   4 ?   -2.8   4.8       5.9   1.2e+04      16      45 ..     664     693 ..     650     702 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.5
  Disintegrin  19 CcdaktCkl...kkgaqC.sageCckekCklksagtvCreak.deeCdleeyCdG 68 
                  C + + C +   +++a C  +++ c++  ++  + ++ r  +  + C++ ++C+G
   CCE31155.1 442 CSE-QACPVaggSSQACCpLSTSQCDAGGRYIMNPSTGRGITsFSPCSIGNICSG 495
                  222.444441112223333223333333444333333343221233666666666 PP

  == domain 2  score: 60.7 bits;  conditional E-value: 8.7e-20
  Disintegrin   1 eegEecDcGaeeeckkdkCcdaktCklkkgaqC..sageCckekCklksagtvCreakdeeCdleeyCdGksaeCped 76 
                  e+gE+cDcG e+ ck++kCcdaktCk+++++ C  s++ Cc+ +C+++s +tvCr+++ e Cd++e C G++a Cp+d
   CCE31155.1 528 EAGEDCDCGGEAGCKDNKCCDAKTCKFTTNSMCdpSNEDCCTPQCQFASPSTVCRPSTGE-CDVAESCPGNKAACPDD 604
                  789******9999*99*****************9888*******************9887.***************97 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.5
  Disintegrin  30 gaqCsageCckek..CklksagtvCreakdeeCdl 62 
                  g +C++g+C +++  C+ ++++ + r+++++ C  
   CCE31155.1 617 GLECASGQCTSRDlqCQHMANSLTGRNNTKA-CPE 650
                  5678778887766678887777777776655.654 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 5.9
  Disintegrin  16 kdkCcdaktCklkkgaqC.sageCckekCkl 45 
                   ++C +  + ++ +g++C   g+C + +C+ 
   CCE31155.1 664 PNQCMS-YNQNFVDGTSCgGGGHCTNGACEG 693
                  345554.455667788894448888888875 PP

>> Reprolysin_3  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.2   2.6e-13   5.2e-10       3     124 .]     301     441 ..     299     441 .. 0.70

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 2.6e-13
  Reprolysin_3   3 aiaalvnranqiyerdlgirlqlvaiiitdka...sdpytkkda.........tealdelaevtaeaergqagyDlvhlftardesgvgGlAyvgsv 87 
                    i+ +vn+a+++ye++++i+l ++++ i+d     s p  + ++         ++ l+++++++  +   +++    +lft+ + ++  GlA+ g +
    CCE31155.1 301 HIVGVVNKASEVYESTFKISLAIKNLTIIDRGcagSAPANTAWNvrcgddvtiSDRLNTFSQWRGDS---KDDNAYWTLFTTCATQTAVGLAWRGMA 394
                   68889*******************9999998744445555555466655333333333333333334...4555567899999999*********** PP

  Reprolysin_3  88 cnsskk..agvnsgssvlgkvga............dtvaHEiGHnfganHt 124
                   c+s+ +  + ++ +++++    a            + +aHE GH fga H+
    CCE31155.1 395 CRSGAGnsKDSSGNNETV----AatnvvvradtewQIFAHESGHTFGAVHD 441
                   **9988543333333333....2344478889999***************7 PP

>> ADAM_CR_2  ADAM cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -34.2  40.9         9   1.8e+04      10      69 ..     571     625 ..     433     626 .. 0.74
   2 !   21.9  13.9   9.1e-08   0.00018       2      69 ..     623     691 ..     622     692 .. 0.84

  Alignments for each domain:
  == domain 1  score: -34.2 bits;  conditional E-value: 9
   ADAM_CR_2  10 QCrlafgseskkcpaekeesvCskl.wCskdgkektcltkkvpaadgTsCgskk.wClkgkC 69 
                 QC++a  s s+ c+       C     C  +  ++ c        +g sCgs+   C +g+C
  CCE31155.1 571 QCQFA--SPSTVCRPS--TGECDVAeSCPGN--KAACPD-DKHKNNGDSCGSGGlECASGQC 625
                 44433..344455554..3333332123332..245543.3344466666655435666666 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 9.1e-08
   ADAM_CR_2   2 GelysadeQCrlafgseskkcpaek.eesvCsklwCskdgk.ektcltkkvpaadgTsCgskkwClkgkC 69 
                 G+  s+d QC+++ +s +   ++++  e++C +l C+ ++   ++c+++++  +dgTsCg + +C +g C
  CCE31155.1 623 GQCTSRDLQCQHMANSLTGRNNTKAcPETDC-MLACTSPDLgPNQCMSYNQNFVDGTSCGGGGHCTNGAC 691
                 9999********9987444333333456688.69999999989*************************** PP

>> Pep_M12B_propep  Reprolysin family propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.1e-05     0.041      36      91 ..      57     113 ..      22     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
  Pep_M12B_propep  36 erlsyrlkafgkefhLnLepnsellapgftvethredgeereesp.qeeehCyYqGe 91 
                        l + l+   +  +L Lepn+++l+++f +++ ++dg+ re ++  + ++ +Y+G+
       CCE31155.1  57 FDLVFTLHNGAQSIRLALEPNHDILHEDFAITHLNDDGSVREVNKvPRAQDKVYRGS 113
                      567788999999********************9999888777755455667899986 PP

>> SieB  Super-infection exclusion protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00017      0.34      24      70 ..     700     746 ..     694     749 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
        SieB  24 lgkfleeyglwiglvflisiayllaqvvskllaeikekikkkreqkk 70 
                 +g+++++++ ++  +++++ +++l  ++s l+  i++ ++++r q+k
  CCE31155.1 700 IGQWIDNHKAIFIPIVVVVGCLVLFALLSCLVSSIRRSLHRRRIQRK 746
                 89**************************************9999987 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.84   1.7e+03      25      45 ..       2      22 ..       1      31 [. 0.69
   2 ?    9.6   0.0   0.00039      0.79      20      52 ..     714     746 ..     713     749 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.84
    LapA_dom 25 vafgiGallgwllslwsylrl 45
                v+f  G++++ ++s+  + + 
  CCE31155.1  2 VTFRCGVVATAFASIALWAQS 22
                78999*********9433343 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00039
    LapA_dom  20 sllllvafgiGallgwllslwsylrlrrelrrl 52 
                 ++++++++++ all +l+s +++  +rr+++r+
  CCE31155.1 714 IVVVVGCLVLFALLSCLVSSIRRSLHRRRIQRK 746
                 6899*****************999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5496.72
//
Query:       CCE31156.1  [L=115]
Description: uncharacterized protein CPUR_05007 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 958.87
//
Query:       CCE31157.1  [L=748]
Description: related to nuclear receptor co-repressor/HDAC3 complex subunit TBLR1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-09   38.7  12.8     0.0017   19.2   0.0    7.4  7  WD40         WD domain, G-beta repeat
    2.9e-08   33.9   0.0      6e-05   23.3   0.0    4.6  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0066   16.3   0.0         50    3.7   0.0    4.1  4  eIF2A        Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.042   12.6   0.0      0.065   12.0   0.0    1.2  1  Vps16_N      Vps16, N-terminal region
      0.088   12.1   0.0       0.26   10.5   0.0    1.6  1  RAB3GAP2_N   Rab3 GTPase-activating protein regulatory subuni
       0.12   12.4   0.5       0.24   11.4   0.5    1.5  1  LisH         LisH
       0.26   10.2   0.3        6.5    5.6   0.3    2.5  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.05   1.3e+02      10      37 ..     377     406 ..     371     407 .. 0.66
   2 ?    1.9   0.6      0.19   4.9e+02      13      34 ..     437     458 ..     418     503 .. 0.77
   3 ?    3.4   0.1     0.064   1.6e+02       5      31 ..     518     546 ..     514     560 .. 0.72
   4 ?   -1.3   0.2       1.9   4.8e+03      18      38 .]     577     597 ..     561     597 .. 0.68
   5 !   19.2   0.0   6.5e-07    0.0017       5      38 .]     603     646 ..     600     646 .. 0.84
   6 !   11.0   0.0   0.00025      0.63      12      38 .]     663     688 ..     655     688 .. 0.86
   7 ?   -1.5   0.0       2.3   5.8e+03      14      26 ..     722     734 ..     721     740 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.05
                 SSSE.EEEEEETTSSE.EEEEETTSEEEEE CS
        WD40  10 Hssv.tslafspdgaw.lasGsdDgtvriW 37 
                 H +v   +++sp  +  la+++ D   riW
  CCE31157.1 377 HAPVlLQCQWSPRDPSvLAAAGTDALARIW 406
                 55554344466666662555566******* PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.19
                 EEEEEEETTSSEEEEEETTSEE CS
        WD40  13 vtslafspdgawlasGsdDgtv 34 
                 vt++++ +dga +a ++d g+v
  CCE31157.1 437 VTAMSWTSDGAAIAVATDSGSV 458
                 8888888888887766655544 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.064
                 EEEESS...SSEEEEEEETTSSEEEEEETT CS
        WD40   5 rtltGH...ssvtslafspdgawlasGsdD 31 
                 + l GH   s+  +  +  d  +l++G+ D
  CCE31157.1 518 HYLPGHdvaSPPLDATWTNDAEFLVTGG-D 546
                 4567895433335777***********9.5 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.9
                 EETTSSEEEEEETTSEEEEEE CS
        WD40  18 fspdgawlasGsdDgtvriWd 38 
                 f+   ++ a++sd gt+ +Wd
  CCE31157.1 577 FDWRTSLAATSSDRGTLDLWD 597
                 444444588999888888887 PP

  == domain 5  score: 19.2 bits;  conditional E-value: 6.5e-07
                 EEEESS.SSEEEEE.........EETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtsla.........fspdgawlasGsdDgtvriWd 38 
                 rt+++H +++t +a         +s+d +++a+G++D+ + iW+
  CCE31157.1 603 RTIRAHrGPITTMAwqpmsptqpVSDDERLIATGGEDCAILIWN 646
                 7899**999*****7777777777777777*************8 PP

  == domain 6  score: 11.0 bits;  conditional E-value: 0.00025
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 ++  laf pdga++a G   + v iW+
  CCE31157.1 663 PIVQLAFTPDGAFIA-GATSRQVLIWK 688
                 57899********97.877*******6 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 2.3
                 EEEEEETTSSEEE CS
        WD40  14 tslafspdgawla 26 
                 ++l+++ +g+ la
  CCE31157.1 722 HCLCWDVSGQKLA 734
                 59****9999887 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.3e-08     6e-05      34      90 ..     430     487 ..     402     489 .. 0.79
   2 ?    3.6   0.0     0.033        84      38      76 ..     478     519 ..     467     527 .. 0.70
   3 ?    1.4   0.0      0.15   3.9e+02      38      88 ..     609     668 ..     580     672 .. 0.68
   4 ?    2.4   0.0     0.078     2e+02      38      59 ..     661     682 ..     655     697 .. 0.82
   5 ?    0.1   0.0      0.39     1e+03      37      57 ..     717     737 ..     682     745 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.3e-08
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgk..vvhslsvksekavtclgWg 90 
                  ++ +  +v++++W  dg  +ava++ g+v  ++++s++  +++s++v++   v +l+W+
   CCE31157.1 430 DTPRTTTVTAMSWTSDGAAIAVATDSGSVACVHVYSADgvLLQSMEVSEP-PVIKLSWN 487
                  5567789***************************9865226788888888.59999997 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.033
  ANAPC4_WD40  38 dsevrsLaWkpdgkl.Lavaysdg..evrlldaesgkvvhsl 76 
                  +  v +L+W+p++++ La++ ++g   +  +++ +g  + ++
   CCE31157.1 478 EPPVIKLSWNPSNTFlLAISPEKGgaLITAYSSRTGAAITHY 519
                  567899*****9987257777777444566677777776665 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.15
  ANAPC4_WD40  38 dsevrsLaWkp.........dgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                   + ++ +aW+p         d++l+a + +d ++ + ++ + +   ++  + ++ ++ l 
   CCE31157.1 609 RGPITTMAWQPmsptqpvsdDERLIATGGEDCAILIWNVRKPESSAKCYLTMDSPIVQLA 668
                  556666666543333333337899999999999999999888877777666666666655 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.078
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysd 59 
                  ds + +La+ pdg ++a a+s 
   CCE31157.1 661 DSPIVQLAFTPDGAFIAGATSR 682
                  78999***********988764 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.39
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavay 57 
                  e++  ++L+W  +g+ La + 
   CCE31157.1 717 EEEDEHCLCWDVSGQKLAYGS 737
                  45555799*******999875 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.042   1.1e+02     144     186 ..     379     416 ..     359     422 .. 0.83
   2 ?    2.9   0.0     0.034        87      61     115 ..     436     493 ..     430     515 .. 0.57
   3 ?    3.7   0.0      0.02        50      64     154 ..     531     620 ..     524     623 .. 0.77
   4 ?    0.8   0.0      0.15   3.8e+02     126     164 ..     641     682 ..     626     700 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.042
                 TT--EEEE-TTSSEEEEEE-TTT-SSS-EEEEEETTTEEEEEE CS
       eIF2A 144 anatlvewspdgryvlTattaprlrvdngfkiwsysGklvykk 186
                 +   +++wsp +  vl a  +     d   +iw++sG+ +   
  CCE31157.1 379 PVLLQCQWSPRDPSVLAAAGT-----DALARIWTISGTALTDD 416
                 455689********9999987.....999********998765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.034
                 .EEEEEE-TTSS-EEEEES.SSSCEEEEEECSCEEE..EEEEEES--EEEE-TTSSEE CS
       eIF2A  61 pihdvaWspkskefaviyG.kmpakvslfdlkvkvi..skleeqkrNtiffspkgklv 115
                  + +++W +++  +av     + a+v++++ ++ ++  ++++e +   + ++p+++++
  CCE31157.1 436 TVTAMSWTSDGAAIAVATDsGSVACVHVYSADGVLLqsMEVSEPPVIKLSWNPSNTFL 493
                 4555566666666655554123345566655543330033334444444555555554 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.02
                 EEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE-TT CS
       eIF2A  64 dvaWspkskefaviyGkmpakvslfdlkvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlvewspd 154
                 d++W  +  ef+v  G+   + s  d+ +++  k+e+++  +     ++    la   + +G+l++wd++  +   +a+    t++ w+p 
  CCE31157.1 531 DATWT-NDAEFLVTGGDLLLHLSRSDTSISQSRKFETNQGDCFNHVLFDWRTSLAATSSDRGTLDLWDESGQRRTIRAHRGPITTMAWQPM 620
                 66775.5678999999999999999999999999999988777777777777888888899*********555555555556666789885 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.15
                 EEEEEETTTTEEEEEEE...-TT--EEEE-TTSSEEEEEE-T CS
       eIF2A 126 eleiwdvkkkkkiakae...aanatlvewspdgryvlTatta 164
                 ++ iw+v k ++ ak      +  +++ + pdg +++ at+ 
  CCE31157.1 641 AILIWNVRKPESSAKCYltmDSPIVQLAFTPDGAFIAGATSR 682
                 5778888855544443300034457899********999986 PP

>> Vps16_N  Vps16, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.5e-05     0.065      32     105 ..     438     505 ..     413     575 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.5e-05
     Vps16_N  32 llvavapygGpiAvtrspsklepaadarPvyiqiyslsGrlLkkllwnkeklvklgwseeee.Livvq.kagavlv 105
                  +++ +  g +iAv+ +       +++    +++ys+ G lL+++   + +++kl w+ ++  L+ ++ ++g +l+
  CCE31157.1 438 TAMSWTSDGAAIAVATDS------GSVA--CVHVYSADGVLLQSMEVSEPPVIKLSWNPSNTfLLAISpEKGGALI 505
                 556667778899999888......2333..47**************************876624555435555555 PP

>> RAB3GAP2_N  Rab3 GTPase-activating protein regulatory subunit N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0001      0.26      61     114 ..     438     486 ..     392     502 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
  RAB3GAP2_N  61 lclplsskssqgspdwtviavGlssGy...lrfytengelLlsqllheepvlkikcv 114
                   ++++s       d  +iav ++sG+   +++y+ +g+lL s  ++e pv+k+  +
  CCE31157.1 438 TAMSWTS-------DGAAIAVATDSGSvacVHVYSADGVLLQSMEVSEPPVIKLS-W 486
                 4444444.......7889********833358*********************98.4 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   9.2e-05      0.24      10      26 ..      33      49 ..      32      49 .. 0.98

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.2e-05
                HHHHCT-HHHHHHHHHH CS
        LisH 10 YLvkeGyeetAeaFekE 26
                YL++ +y etA++F+kE
  CCE31157.1 33 YLLEGNYRETAAKFQKE 49
                9***************9 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.59   1.5e+03     186     217 ..     377     409 ..     368     424 .. 0.79
   2 ?    5.6   0.3    0.0025       6.5     187     220 ..     434     467 ..     430     475 .. 0.88
   3 ?    0.7   0.0     0.078     2e+02     184     214 ..     658     687 ..     643     707 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.59
    Ge1_WD40 186 ehsliveaafsp.dGtalatasedGevkffqvy 217
                 + + + +  +sp d  +la+a +d + + + + 
  CCE31157.1 377 HAPVLLQCQWSPrDPSVLAAAGTDALARIWTIS 409
                 33477888888768999*********9999886 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0025
    Ge1_WD40 187 hsliveaafspdGtalatasedGevkffqvyled 220
                 +++++  ++++dG+a+a+a+  G v    vy  d
  CCE31157.1 434 TTTVTAMSWTSDGAAIAVATDSGSVACVHVYSAD 467
                 578999999****************999999765 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.078
    Ge1_WD40 184 ieehsliveaafspdGtalatasedGevkff 214
                 ++ +s iv+ af+pdG+ +a a++  +v  +
  CCE31157.1 658 LTMDSPIVQLAFTPDGAFIAGATSR-QVLIW 687
                 4567889************998764.44445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5464.00
//
Query:       CCE31158.1  [L=358]
Description: related to human PL6 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-28   98.8   4.2      4e-28   97.9   4.2    1.5  1  DUF1751   Eukaryotic integral membrane protein (DUF1751)
  ------ inclusion threshold ------
      0.092   12.7  12.5       0.17   11.9  10.2    2.1  2  Rhomboid  Rhomboid family


Domain annotation for each model (and alignments):
>> DUF1751  Eukaryotic integral membrane protein (DUF1751)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   4.2   4.4e-32     4e-28       1      99 []      48     146 ..      48     146 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 4.4e-32
     DUF1751   1 PgallpypwtlltasfveqnvwkvlvslltlllggkylErlWgskEllkFilvvnvitnllvvlltlllylvtkseelllvpisGlagilagflvalkQ 99 
                 P+ +l +pwt+lt+++ve+nv+++++s +tl++gg+ylEr+W+s +l+kF+++v++i+n+l++l++++l+++t+se+++l+ isG+++i+++flva++Q
  CCE31158.1  48 PQLSLTFPWTFLTSALVESNVFTLAISGVTLYHGGRYLERAWSSADLAKFLILVTLIPNVLTFLVMIFLFALTRSESWTLTSISGGVSIQVAFLVAFSQ 146
                 8999**************************************************************************99*****************99 PP

>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  10.2   1.9e-05      0.17       6     138 ..      54     199 ..      49     210 .. 0.72
   2 ?    0.6   0.0     0.056   5.1e+02      66      99 ..     237     270 ..     225     277 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
                 -TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S..............-EESSHHHHHHHHHHHHHHHHCC CS
    Rhomboid   6 elwrlltsmflHagwlHllfNmlallvfGsplerrlGslrflllyllsglagsllsllfsaeses...........plvGaSGaifgllgallvlvprn 93 
                   w++lts+++  +++ l++  + l+  G  ler + s+ ++ + +l+ l+ ++l++l+     +           ++ G S +  ++l+a++ l+p +
  CCE31158.1  54 FPWTFLTSALVESNVFTLAISGVTLYHGGRYLERAWSSADLAKFLILVTLIPNVLTFLVMIFLFAltrseswtltsISGGVS-IQVAFLVAFSQLIPAH 151
                 58************************************99999999977776555554443332334566898885555555.5669999999999999 PP

                 CCGS----HC..........CCCCCCCCCCHHHCTSSSTTTHHHHHHHHHHH CS
    Rhomboid  94 rkllrkliia.......llllllfillnlvlgllpraggvsnlAHlgGllaG 138
                   +l++ i+        ll+++++ +l+l+  l++     + +   +G+l  
  CCE31158.1 152 TVTLFRGILSlkvprlpLLYIGIVTALSLTPLLTRA----AVWQASFGFLSS 199
                 999999999988866655555555555555444443....344334455554 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.056
                 -S...-EESSHHHHHHHHHHHHHHHHCCCCGS-- CS
    Rhomboid  66 aesesplvGaSGaifgllgallvlvprnrkllrk 99 
                   ++ +++G+S  if +l+++ + vp+++  +  
  CCE31158.1 237 GPVKPFVAGLSEQIFNILVMMRLCVPFSHADMSI 270
                 45566999**********9999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2776.64
//
Query:       CCE31159.1  [L=928]
Description: related to TPR-containing protein Mql1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-50  167.1  32.6    6.6e-08   32.0   0.0   10.8 11  TPR_1            Tetratricopeptide repeat
    7.4e-45  147.5  26.9    1.2e-05   25.1   0.0   10.5 11  TPR_2            Tetratricopeptide repeat
    3.2e-31  104.9  22.1    4.6e-05   23.3   0.0   10.9 10  TPR_8            Tetratricopeptide repeat
    2.4e-27   93.3  19.8     0.0013   18.9   0.1   10.7 10  TPR_17           Tetratricopeptide repeat
    6.9e-27   93.8  13.9    2.1e-08   34.7   0.1    6.6  6  TPR_16           Tetratricopeptide repeat
    5.3e-24   82.9  14.0    0.00025   21.6   0.0    9.0  9  TPR_14           Tetratricopeptide repeat
    4.1e-22   78.5  22.8    1.9e-05   25.1   0.2    7.9  7  TPR_19           Tetratricopeptide repeat
    1.6e-21   75.7  28.2    2.1e-05   24.1   0.3    9.8  9  TPR_11           TPR repeat
      4e-20   71.1  19.2      0.016   15.8   1.3   10.5 10  TPR_6            Tetratricopeptide repeat
    3.4e-17   62.5  25.8    1.2e-05   25.5   1.4    7.3  7  TPR_12           Tetratricopeptide repeat
    1.2e-14   54.1  12.5     0.0031   17.6   0.1    6.5  7  TPR_9            Tetratricopeptide repeat
    1.3e-14   53.0  10.9      0.045   13.8   0.1    9.2  9  TPR_7            Tetratricopeptide repeat
      7e-10   39.0  11.7    5.2e-08   33.0   2.3    3.9  4  ANAPC3           Anaphase-promoting complex, cyclosome, subun
     0.0011   18.8   3.6     0.0011   18.8   3.6    5.3  3  TPR_21           Tetratricopeptide repeat-like domain
  ------ inclusion threshold ------
      0.018   14.3  49.2       0.24   10.6   0.8    5.2  5  TPR_15           Tetratricopeptide repeat
      0.021   13.8   6.3      0.033   13.2   6.3    1.4  1  ASC              Amiloride-sensitive sodium channel
       0.13   10.6   1.3       0.16   10.3   1.3    1.1  1  Mem_trans        Membrane transport protein
        0.2   11.6  25.7       0.68    9.9  25.7    1.9  1  AP-5_subunit_s1  AP-5 complex subunit sigma-1
       0.31   10.0  17.7        0.5    9.3  17.7    1.3  1  Membralin        Tumour-associated protein
       0.47    9.2  10.9       0.97    8.1  10.9    1.5  1  Pkinase_fungal   Fungal protein kinase


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.8e-06    0.0025       3      33 ..     109     139 ..     108     140 .. 0.94
   2 !   13.5   0.0   5.2e-05     0.047       4      34 .]     144     174 ..     142     174 .. 0.92
   3 !   22.0   1.0   1.1e-07   9.8e-05       2      28 ..     176     202 ..     175     204 .. 0.97
   4 !   12.4   0.0   0.00012       0.1       3      34 .]     213     244 ..     211     244 .. 0.96
   5 !   14.0   0.3   3.6e-05     0.032       2      25 ..     249     272 ..     249     273 .. 0.94
   6 !   26.0   0.0   6.1e-09   5.4e-06       2      34 .]     286     318 ..     285     318 .. 0.96
   7 ?   -2.0   0.0       4.3   3.9e+03       1      15 [.     319     333 ..     319     334 .. 0.87
   8 ?   -1.4   0.0       2.8   2.5e+03      18      28 ..     340     350 ..     340     354 .. 0.84
   9 !   25.7   3.0   7.6e-09   6.9e-06       1      29 [.     357     385 ..     357     390 .. 0.91
  10 !   32.0   0.0   7.4e-11   6.6e-08       3      32 ..     393     422 ..     391     423 .. 0.96
  11 !   15.6   0.5   1.1e-05      0.01       2      34 .]     426     459 ..     425     459 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.8e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                 ++ ++G +   l  +deA  +ye+AL+ nPn
  CCE31159.1 109 VWLQIGSCSEVLRLPDEAMHAYERALQANPN 139
                 69999*************************9 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnPnn 34 
                  + +G+++   + +d+Aley++  ++++ nn
  CCE31159.1 144 MNAIGMLLKGREAFDKALEYFRAIVQIDQNN 174
                 6789************************998 PP

  == domain 3  score: 22.0 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekAL 28 
                 +a+ nlG++y+  + +++A ++y++AL
  CCE31159.1 176 EAWGNLGHCYLMTEALQKAYDAYQQAL 202
                 79************************9 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                  +y++G +y +   yd A+e+++++ +++P++
  CCE31159.1 213 LWYGIGILYDRYTSYDYAEEAFSQVMQIQPDF 244
                 6*****************************97 PP

  == domain 5  score: 14.0 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyye 25 
                 +++++lG +y +++k+ + le+++
  CCE31159.1 249 EIYFRLGIIYKQQNKFLQSLECFR 272
                 58********************96 PP

  == domain 6  score: 26.0 bits;  conditional E-value: 6.1e-09
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++++++G+++ ++++++ A ++y+++L + Pn+
  CCE31159.1 286 DIWFQIGHVHEQQKDFESAKAAYQRVLDHSPNH 318
                 68*****************************97 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 4.3
                 HHHHHHHHHHHHHTT CS
       TPR_1   1 akalynlGnayfklg 15 
                 ak+l +lG +++++ 
  CCE31159.1 319 AKVLQQLGWLHHQQS 333
                 789999******996 PP

  == domain 8  score: -1.4 bits;  conditional E-value: 2.8
                 HHHHHHHHHHH CS
       TPR_1  18 deAleyyekAL 28 
                 d A++y ek +
  CCE31159.1 340 DRAIQYLEKSV 350
                 68******986 PP

  == domain 9  score: 25.7 bits;  conditional E-value: 7.6e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALe 29 
                 a+++y lG +y+ ++ky +A e+y++A+ 
  CCE31159.1 357 AQSWYLLGRCYMAQQKYPKAYEAYQQAVY 385
                 789************************86 PP

  == domain 10  score: 32.0 bits;  conditional E-value: 7.4e-11
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnP 32 
                  ++ +G++y++ ++y +Al++y++A++lnP
  CCE31159.1 393 FWCSIGVLYYQINQYRDALDAYSRAIRLNP 422
                 5****************************9 PP

  == domain 11  score: 15.6 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHT.T-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfkl.gkydeAleyyekALelnPnn 34 
                 +++y lG +y +  ++  +Al++y++A el+P n
  CCE31159.1 426 EVWYDLGTLYESCnNQVADALDAYQRAAELDPGN 459
                 789999999998615789**************87 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.4e-05     0.021       3      33 ..     109     139 ..     107     140 .. 0.92
   2 !   11.1   0.0   0.00038      0.34       3      34 .]     143     174 ..     142     174 .. 0.93
   3 !   14.9   0.9   2.4e-05     0.022       2      28 ..     176     202 ..     175     205 .. 0.96
   4 !    9.5   0.0    0.0012       1.1       3      33 ..     213     243 ..     211     244 .. 0.94
   5 !   12.4   0.0   0.00015      0.13       2      25 ..     249     272 ..     248     275 .. 0.94
   6 !   25.1   0.0   1.3e-08   1.2e-05       2      34 .]     286     318 ..     285     318 .. 0.96
   7 ?   -2.3   0.0       7.6   6.8e+03       1      14 [.     319     332 ..     319     334 .. 0.85
   8 ?   -0.2   0.0       1.6   1.4e+03      18      32 ..     340     354 ..     339     356 .. 0.84
   9 !   23.2   2.4   5.1e-08   4.5e-05       1      28 [.     357     384 ..     357     390 .. 0.91
  10 !   23.9   0.0   3.1e-08   2.7e-05       3      32 ..     393     422 ..     391     423 .. 0.95
  11 !   20.4   0.1   4.2e-07   0.00037       2      34 .]     426     459 ..     425     459 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.4e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 ++ ++G + + l  ++eA +a+e+Al+ +Pn
  CCE31159.1 109 VWLQIGSCSEVLRLPDEAMHAYERALQANPN 139
                 68899999999999****************9 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00038
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 a +++G+++  +  +++Ale+f++ +++d nn
  CCE31159.1 143 AMNAIGMLLKGREAFDKALEYFRAIVQIDQNN 174
                 578999***********************997 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 2.4e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 ea+ nlG +y+    +++A +a+++Al
  CCE31159.1 176 EAWGNLGHCYLMTEALQKAYDAYQQAL 202
                 89************************9 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.0012
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 ++y +G +y +   y+ A+eaf ++ ++ P+
  CCE31159.1 213 LWYGIGILYDRYTSYDYAEEAFSQVMQIQPD 243
                 7*****************************8 PP

  == domain 5  score: 12.4 bits;  conditional E-value: 0.00015
       TPR_2   2 ealynlGlayyklgdyeeAleafe 25 
                 e++++lG +y +++++ + le+f+
  CCE31159.1 249 EIYFRLGIIYKQQNKFLQSLECFR 272
                 79*********************8 PP

  == domain 6  score: 25.1 bits;  conditional E-value: 1.3e-08
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++++++G ++++++d+e A++a++++l + Pn+
  CCE31159.1 286 DIWFQIGHVHEQQKDFESAKAAYQRVLDHSPNH 318
                 58*****************************97 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 7.6
       TPR_2   1 aealynlGlayykl 14 
                 a++l +lG+++ ++
  CCE31159.1 319 AKVLQQLGWLHHQQ 332
                 688999****9987 PP

  == domain 8  score: -0.2 bits;  conditional E-value: 1.6
       TPR_2  18 eeAleafekAleldP 32 
                 ++A++++ek+++ d 
  CCE31159.1 340 DRAIQYLEKSVSADN 354
                 78*******998876 PP

  == domain 9  score: 23.2 bits;  conditional E-value: 5.1e-08
       TPR_2   1 aealynlGlayyklgdyeeAleafekAl 28 
                 a+ +y lG++y+++++y +A ea+++A+
  CCE31159.1 357 AQSWYLLGRCYMAQQKYPKAYEAYQQAV 384
                 678************************7 PP

  == domain 10  score: 23.9 bits;  conditional E-value: 3.1e-08
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldP 32 
                  ++ +G +yy+ ++y +Al+a+ +A++l+P
  CCE31159.1 393 FWCSIGVLYYQINQYRDALDAYSRAIRLNP 422
                 7999*************************9 PP

  == domain 11  score: 20.4 bits;  conditional E-value: 4.2e-07
       TPR_2   2 ealynlGlayyklgdy.eeAleafekAleldPnn 34 
                 e++y lG +y+  ++  ++Al+a+++A eldP+n
  CCE31159.1 426 EVWYDLGTLYESCNNQvADALDAYQRAAELDPGN 459
                 89******************************97 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00041      0.37       3      33 ..     109     139 ..     107     140 .. 0.93
   2 !    9.3   0.0    0.0016       1.4       3      34 .]     143     174 ..     142     174 .. 0.93
   3 !    7.2   0.6    0.0073       6.5       2      28 ..     176     202 ..     175     202 .. 0.96
   4 ?    3.3   0.0      0.13   1.2e+02       4      33 ..     214     243 ..     213     244 .. 0.93
   5 !    8.2   0.1    0.0036       3.3       2      25 ..     249     272 ..     249     272 .. 0.94
   6 !   23.3   0.0   5.2e-08   4.6e-05       2      34 .]     286     318 ..     285     318 .. 0.92
   7 ?    6.0   0.1     0.018        16      17      33 ..     339     355 ..     319     356 .. 0.77
   8 !   17.2   1.5   4.7e-06    0.0042       1      31 [.     357     387 ..     357     390 .. 0.92
   9 !   15.1   0.0   2.2e-05      0.02       3      32 ..     393     422 ..     391     424 .. 0.95
  10 !    8.8   0.0    0.0022         2       2      33 ..     426     458 ..     425     459 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00041
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +++++gs+ + l   +eA+ +ye+al+++p+
  CCE31159.1 109 VWLQIGSCSEVLRLPDEAMHAYERALQANPN 139
                 799999999999******************8 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 a++ +g++++  + +++A ey++  +++d++n
  CCE31159.1 143 AMNAIGMLLKGREAFDKALEYFRAIVQIDQNN 174
                 5789*************************986 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0073
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 ea+ nlg++yl ++ +++A  +y++al
  CCE31159.1 176 EAWGNLGHCYLMTEALQKAYDAYQQAL 202
                 79***********************97 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.13
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +y +g +y+    y+ A+e++ ++ +++pd
  CCE31159.1 214 WYGIGILYDRYTSYDYAEEAFSQVMQIQPD 243
                 999999****9*****************98 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0036
                 CHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyye 25 
                 e+y++lg iy++++++ ++ e+++
  CCE31159.1 249 EIYFRLGIIYKQQNKFLQSLECFR 272
                 68******************9996 PP

  == domain 6  score: 23.3 bits;  conditional E-value: 5.2e-08
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 ++++++g+++++++d+e+Ak++y+++l+ +p++
  CCE31159.1 286 DIWFQIGHVHEQQKDFESAKAAYQRVLDHSPNH 318
                 68************************9988775 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHH CS
       TPR_8  17 yeeAkeyyekaleldpd 33 
                  + A++y+ek +++d +
  CCE31159.1 339 QDRAIQYLEKSVSADNQ 355
                 589**********9987 PP

  == domain 8  score: 17.2 bits;  conditional E-value: 4.7e-06
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleld 31 
                 a+++y+lg++y+ +++y +A e+y++a++ +
  CCE31159.1 357 AQSWYLLGRCYMAQQKYPKAYEAYQQAVYRE 387
                 799************************9876 PP

  == domain 9  score: 15.1 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldp 32 
                  ++ +g +y + ++y  A  +y +a++l+p
  CCE31159.1 393 FWCSIGVLYYQINQYRDALDAYSRAIRLNP 422
                 69***************************9 PP

  == domain 10  score: 8.8 bits;  conditional E-value: 0.0022
                 CHHHHHHHHH.HHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiy.lklgdyeeAkeyyekaleldpd 33 
                 e++y lg +y +  ++   A  +y++a eldp 
  CCE31159.1 426 EVWYDLGTLYeSCNNQVADALDAYQRAAELDPG 458
                 89********5556788**************96 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     5e-05     0.045       1      28 [.     129     156 ..     129     162 .. 0.84
   2 !    9.8   0.1    0.0012       1.1       3      26 ..     165     188 ..     163     196 .. 0.80
   3 ?    5.2   0.1     0.037        33       2      24 ..     198     222 ..     197     232 .. 0.84
   4 ?    1.0   0.0       0.8   7.2e+02      15      29 ..     250     264 ..     249     269 .. 0.83
   5 ?   -1.5   0.0         5   4.5e+03      14      33 ..     286     305 ..     286     306 .. 0.89
   6 !   17.3   0.0     5e-06    0.0045       1      28 [.     307     334 ..     307     344 .. 0.81
   7 !   12.4   0.3   0.00018      0.16       2      32 ..     346     376 ..     345     378 .. 0.91
   8 !   13.3   0.1   9.1e-05     0.082       1      33 [.     379     411 ..     379     412 .. 0.95
   9 !   18.9   0.1   1.5e-06    0.0013       2      32 ..     414     445 ..     413     447 .. 0.83
  10 ?    4.4   0.0     0.066        59       1      13 [.     448     460 ..     448     464 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5e-05
      TPR_17   1 lylkaleldPnnadaynnLAelllknGd 28 
                 +y++al+ +Pn+ +a+n  + ll+ +  
  CCE31159.1 129 AYERALQANPNSTVAMNAIGMLLKGREA 156
                 5*********************986555 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0012
      TPR_17   3 lkaleldPnnadaynnLAelllkn 26 
                 +  +++d nn +a+ nL+ ++l+ 
  CCE31159.1 165 RAIVQIDQNNGEAWGNLGHCYLMT 188
                 556778***************965 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.037
      TPR_17   2 ylkalel..dPnnadaynnLAelll 24 
                 y++al +  dP+++ +++  + l+ 
  CCE31159.1 198 YQQALVNlrDPKDPMLWYGIGILYD 222
                 888888888************9996 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.8
      TPR_17  15 aynnLAelllknGdl 29 
                  y+ L+ ++++++++
  CCE31159.1 250 IYFRLGIIYKQQNKF 264
                 79********99986 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 5
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                 d +++ + ++++++d++ A+
  CCE31159.1 286 DIWFQIGHVHEQQKDFESAK 305
                 68************999886 PP

  == domain 6  score: 17.3 bits;  conditional E-value: 5e-06
      TPR_17   1 lylkaleldPnnadaynnLAelllknGd 28 
                 +y+++l++ Pn+a+++++L++l++++ +
  CCE31159.1 307 AYQRVLDHSPNHAKVLQQLGWLHHQQSN 334
                 5*********************996543 PP

  == domain 7  score: 12.4 bits;  conditional E-value: 0.00018
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 ++k++  d  +a ++++L++++  + ++ +A
  CCE31159.1 346 LEKSVSADNQDAQSWYLLGRCYMAQQKYPKA 376
                 6999*******************99999887 PP

  == domain 8  score: 13.3 bits;  conditional E-value: 9.1e-05
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 +y++a+ ++ +n+ +++  ++l+++++++++A+
  CCE31159.1 379 AYQQAVYREGKNPTFWCSIGVLYYQINQYRDAL 411
                 59****************************996 PP

  == domain 9  score: 18.9 bits;  conditional E-value: 1.5e-06
      TPR_17   2 ylkaleldPnnadaynnLAelll.knGdlmtA 32 
                 y +a++l+P  +++++ L++l++  n++ ++A
  CCE31159.1 414 YSRAIRLNPFISEVWYDLGTLYEsCNNQVADA 445
                 99********************7355666666 PP

  == domain 10  score: 4.4 bits;  conditional E-value: 0.066
      TPR_17   1 lylkaleldPnna 13 
                 +y++a+eldP n+
  CCE31159.1 448 AYQRAAELDPGNP 460
                 5**********97 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2     2e-05     0.018      13      65 ..     123     172 ..     118     174 .. 0.89
   2 !   15.3   0.5   2.7e-05     0.024       4      62 ..     148     203 ..     145     211 .. 0.87
   3 ?    4.7   0.0     0.056        50      13      58 ..     227     272 ..     215     281 .. 0.80
   4 !   17.3   0.1   6.5e-06    0.0058       3      49 ..     291     334 ..     289     337 .. 0.93
   5 !   19.4   0.7   1.4e-06    0.0012      14      61 ..     340     384 ..     339     391 .. 0.83
   6 !   34.7   0.1   2.3e-11   2.1e-08       4      68 .]     398     460 ..     395     460 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2e-05
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 +d+A +a+e+al ++   P    A+++ g ++  +  +++A++++ra ++ + 
  CCE31159.1 123 PDEAMHAYERALQAN---PNSTVAMNAIGMLLKGREAFDKALEYFRAIVQIDQ 172
                 79*************...66666************************987765 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.7e-05
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 ++++  +  +d+A+++++a +  d     + eA+ +lg ++l    l++A ++y+ al 
  CCE31159.1 148 GMLLKGREAFDKALEYFRAIVQID---QNNGEAWGNLGHCYLMTEALQKAYDAYQQALV 203
                 5566667779**************...************************99999884 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.056
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                 yd A++a+ ++   +p+   a e ++ lg ++ +q+ +   ++ +r
  CCE31159.1 227 YDYAEEAFSQVMQIQPDFEKANEIYFRLGIIYKQQNKFLQSLECFR 272
                 6779999999999998888899999999999999988766666555 PP

  == domain 4  score: 17.3 bits;  conditional E-value: 6.5e-06
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                  ++ + +++d++ A aa++++l+     P +a  l  lg+++ +q++
  CCE31159.1 291 IGHVHEQQKDFESAKAAYQRVLDHS---PNHAKVLQQLGWLHHQQSN 334
                 69999********************...*******999999999975 PP

  == domain 5  score: 19.4 bits;  conditional E-value: 1.4e-06
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 d+A+ +le  + +d    ++a++++llg+++ +q+ +++A ++y+ a+
  CCE31159.1 340 DRAIQYLEKSVSAD---NQDAQSWYLLGRCYMAQQKYPKAYEAYQQAV 384
                 57777777777777...99**********************7777776 PP

  == domain 6  score: 34.7 bits;  conditional E-value: 2.3e-11
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaal.rqgrlaeAaalyraalraapdap 68 
                 + ++++ ++y+dA+ a+ +a++++   P+  e ++ lg ++   ++ +a+A+++y++a++ +p++p
  CCE31159.1 398 GVLYYQINQYRDALDAYSRAIRLN---PFISEVWYDLGTLYEsCNNQVADALDAYQRAAELDPGNP 460
                 6689********************...***************7779999999************98 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00048      0.43       3      37 ..     109     143 ..     107     148 .. 0.85
   2 !   10.4   0.0    0.0011      0.98      10      42 ..     150     182 ..     144     184 .. 0.86
   3 ?    5.9   0.0     0.032        28       9      40 ..     183     216 ..     180     220 .. 0.83
   4 ?   -1.4   0.0       6.7     6e+03      20      43 ..     230     253 ..     227     269 .. 0.80
   5 !   21.6   0.0   2.8e-07   0.00025       3      42 ..     287     326 ..     285     328 .. 0.94
   6 !   10.7   0.1   0.00089       0.8       4      44 .]     322     366 ..     320     366 .. 0.80
   7 !    8.9   0.1    0.0035       3.1       2      38 ..     358     394 ..     357     396 .. 0.84
   8 !   11.3   0.0   0.00057      0.51       9      43 ..     399     433 ..     391     434 .. 0.88
   9 !   17.5   0.1   5.7e-06    0.0051       2      39 ..     426     466 ..     425     470 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00048
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaea 37 
                 ++l++++  + l+ pdeA+ +++ral+++P++ +a
  CCE31159.1 109 VWLQIGSCSEVLRLPDEAMHAYERALQANPNSTVA 143
                 57777777777899****************99776 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0011
      TPR_14  10 allalGdpdeAiallrralalaPddaeawllla 42 
                 +l  ++ +d+A++++r++++ + ++ eaw  l+
  CCE31159.1 150 LLKGREAFDKALEYFRAIVQIDQNNGEAWGNLG 182
                 5556778**********************9987 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.032
      TPR_14   9 eallalGdpdeAiallrrala..laPddaeawll 40 
                 + +l  + +++A +++++al   ++P+d+ +w+ 
  CCE31159.1 183 HCYLMTEALQKAYDAYQQALVnlRDPKDPMLWYG 216
                 55666778999**********8889******975 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 6.7
      TPR_14  20 AiallrralalaPddaeawlllaq 43 
                 A++++ ++ + +Pd++ a+  + +
  CCE31159.1 230 AEEAFSQVMQIQPDFEKANEIYFR 253
                 778888888888988877755544 PP

  == domain 5  score: 21.6 bits;  conditional E-value: 2.8e-07
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawllla 42 
                  + +++++++++ d++ A a+++r+l++ P++a ++ +l+
  CCE31159.1 287 IWFQIGHVHEQQKDFESAKAAYQRVLDHSPNHAKVLQQLG 326
                 699********************************99997 PP

  == domain 6  score: 10.7 bits;  conditional E-value: 0.00089
      TPR_14   4 llalaeallalGd....pdeAiallrralalaPddaeawlllaql 44 
                 l++l++++ ++ +     d+Ai++l++ ++++ +da+ w+ll+++
  CCE31159.1 322 LQQLGWLHHQQSNafdtQDRAIQYLEKSVSADNQDAQSWYLLGRC 366
                 56777777666544444688**********************986 PP

  == domain 7  score: 8.9 bits;  conditional E-value: 0.0035
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeaw 38 
                 + +++l++ ++a++++ +A +++++a+ +  +++++w
  CCE31159.1 358 QSWYLLGRCYMAQQKYPKAYEAYQQAVYREGKNPTFW 394
                 57***********************975666666555 PP

  == domain 8  score: 11.3 bits;  conditional E-value: 0.00057
      TPR_14   9 eallalGdpdeAiallrralalaPddaeawlllaq 43 
                  ++++  ++++A++++ ra++l+P   e+w+ l+ 
  CCE31159.1 399 VLYYQINQYRDALDAYSRAIRLNPFISEVWYDLGT 433
                 5788889***********************99985 PP

  == domain 9  score: 17.5 bits;  conditional E-value: 5.7e-06
      TPR_14   2 eallalaealla.lGdpdeAiallrralalaPdda..eawl 39 
                 e++++l+ +++  + + ++A+++++ra +l+P+++   a+l
  CCE31159.1 426 EVWYDLGTLYEScNNQVADALDAYQRAAELDPGNPhiKARL 466
                 78********9735789****************98334545 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2     0.014        12       7      27 ..     123     143 ..     121     152 .. 0.85
   2 !   20.5   0.5   5.9e-07   0.00053       5      57 ..     155     207 ..     151     211 .. 0.89
   3 !    9.1   0.7    0.0021       1.9       6      57 ..     190     243 ..     186     248 .. 0.90
   4 ?    4.9   0.0     0.042        37       7      47 ..     227     270 ..     220     280 .. 0.85
   5 !   13.2   0.1   0.00011     0.097       3      39 ..     297     333 ..     296     337 .. 0.91
   6 !   25.1   0.2   2.1e-08   1.9e-05       8      58 ..     340     390 ..     338     394 .. 0.90
   7 !   16.9   0.7   7.4e-06    0.0066       5      62 ..     405     463 ..     401     469 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.014
      TPR_19   7 yaeAlalleqalqedpknaea 27 
                 ++eA+ ++e+alq++p++  a
  CCE31159.1 123 PDEAMHAYERALQANPNSTVA 143
                 699*************97655 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 5.9e-07
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 + ++ Al++++++ q d +n+ea+ +L  ++l +  l++A ++ ++++   +d
  CCE31159.1 155 EAFDKALEYFRAIVQIDQNNGEAWGNLGHCYLMTEALQKAYDAYQQALVNLRD 207
                 6799************************************9999888766555 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0021
      TPR_19   6 dyaeAlalleqal..qedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                  ++ A ++++qal    dpk++ ++++  +++     +d Ae++ +++++ +pd
  CCE31159.1 190 ALQKAYDAYQQALvnLRDPKDPMLWYGIGILYDRYTSYDYAEEAFSQVMQIQPD 243
                 67899999999987788********************************99999 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.042
      TPR_19   7 yaeAlalleqalqedpk...naearllLAeallalgqldeAeal 47 
                 y+ A ++++q++q  p+     e+  +L +++ +++ + +  ++
  CCE31159.1 227 YDYAEEAFSQVMQIQPDfekANEIYFRLGIIYKQQNKFLQSLEC 270
                 77899*********999887888888*********998776665 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 0.00011
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalg 39 
                 +++d+++A a+++++l+++p++a ++ +L  ++ ++ 
  CCE31159.1 297 QQKDFESAKAAYQRVLDHSPNHAKVLQQLGWLHHQQS 333
                 699***********************99998888875 PP

  == domain 6  score: 25.1 bits;  conditional E-value: 2.1e-08
      TPR_19   8 aeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 ++A+++le+  ++d+++a  ++lL ++++a+  + +A ++ +++   + ++
  CCE31159.1 340 DRAIQYLEKSVSADNQDAQSWYLLGRCYMAQQKYPKAYEAYQQAVYREGKN 390
                 78************************************9999987777665 PP

  == domain 7  score: 16.9 bits;  conditional E-value: 7.4e-06
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallal.gqldeAealLdalpeedpddarya 62 
                 ++y +Al+++++a+  +p  +e++++L  ++ +  +q+++A ++ +++ e dp ++ ++
  CCE31159.1 405 NQYRDALDAYSRAIRLNPFISEVWYDLGTLYESCnNQVADALDAYQRAAELDPGNPHIK 463
                 59*******************************99******************998876 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0099       8.9      11      28 ..     124     141 ..     124     153 .. 0.82
   2 !    6.2   0.0    0.0092       8.3      10      39 ..     157     186 ..     154     188 .. 0.89
   3 ?    4.9   0.2     0.024        22      11      38 ..     192     221 ..     189     223 .. 0.83
   4 ?    4.6   0.1     0.029        26      15      41 ..     232     261 ..     226     262 .. 0.72
   5 !   10.8   0.0   0.00034       0.3       1      41 [.     292     332 ..     292     333 .. 0.92
   6 ?    5.8   0.1     0.013        11      11      41 ..     340     370 ..     339     370 .. 0.91
   7 !   24.0   0.7   2.5e-08   2.2e-05       1      40 [.     364     403 ..     364     405 .. 0.95
   8 !   24.1   0.3   2.4e-08   2.1e-05       3      39 ..     400     436 ..     398     437 .. 0.94
   9 !   12.2   0.3   0.00012      0.11       8      29 ..     440     461 ..     439     463 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0099
      TPR_11  11 eeAieaYkkAlkldPdna 28 
                 +eA+ aY++Al+ +P++ 
  CCE31159.1 124 DEAMHAYERALQANPNST 141
                 79*************975 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0092
      TPR_11  10 yeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 +++A+e +++ +++d++n ea+ nLG+ y+
  CCE31159.1 157 FDKALEYFRAIVQIDQNNGEAWGNLGHCYL 186
                 789999999999**************9886 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.024
      TPR_11  11 eeAieaYkkAlkl..dPdnaeayynLGlay 38 
                  +A  aY++Al    dP+++ ++y++G +y
  CCE31159.1 192 QKAYDAYQQALVNlrDPKDPMLWYGIGILY 221
                 6788899999973359***********998 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.029
      TPR_11  15 eaYkkAlkldPdna...eayynLGlayykq 41 
                 ea+++  ++ Pd+    e+y+ LG +y +q
  CCE31159.1 232 EAFSQVMQIQPDFEkanEIYFRLGIIYKQQ 261
                 6667777777776544489********998 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.00034
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 G++  +q ++e A +aY++ l+ +P+ a ++  LG ++++q
  CCE31159.1 292 GHVHEQQKDFESAKAAYQRVLDHSPNHAKVLQQLGWLHHQQ 332
                 56666999******************************998 PP

  == domain 6  score: 5.8 bits;  conditional E-value: 0.013
      TPR_11  11 eeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 + Ai+ ++k +  d+++a  +y LG  y++q
  CCE31159.1 340 DRAIQYLEKSVSADNQDAQSWYLLGRCYMAQ 370
                 6799*********************888765 PP

  == domain 7  score: 24.0 bits;  conditional E-value: 2.5e-08
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 G+ y++q+ky++A eaY++A+    +n+++++ +G++yy+
  CCE31159.1 364 GRCYMAQQKYPKAYEAYQQAVYREGKNPTFWCSIGVLYYQ 403
                 677************************************8 PP

  == domain 8  score: 24.1 bits;  conditional E-value: 2.4e-08
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 +yy+ ++y +A+ aY++A++l+P   e++y LG +y 
  CCE31159.1 400 LYYQINQYRDALDAYSRAIRLNPFISEVWYDLGTLYE 436
                 7********************************9885 PP

  == domain 9  score: 12.2 bits;  conditional E-value: 0.00012
      TPR_11   8 GkyeeAieaYkkAlkldPdnae 29 
                 ++  +A+ aY++A +ldP n+ 
  CCE31159.1 440 NQVADALDAYQRAAELDPGNPH 461
                 68899*************9995 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0043       3.9       3      33 .]     110     140 ..     108     140 .. 0.90
   2 ?    2.1   0.1      0.43   3.9e+02       7      28 ..     148     169 ..     146     173 .. 0.78
   3 ?    3.6   0.2      0.14   1.3e+02       5      27 ..     180     202 ..     180     204 .. 0.87
   4 ?    3.9   0.1      0.11        99       4      32 ..     215     243 ..     213     243 .. 0.92
   5 ?    2.3   0.0      0.35   3.1e+02       3      24 ..     251     272 ..     249     277 .. 0.87
   6 !   15.2   0.0   2.7e-05     0.024       3      33 .]     288     318 ..     286     318 .. 0.93
   7 ?   -0.3   0.0       2.4   2.2e+03       5      25 ..     324     348 ..     321     351 .. 0.73
   8 !   15.8   1.3   1.8e-05     0.016       2      28 ..     359     385 ..     358     389 .. 0.90
   9 !   10.0   0.1    0.0012       1.1       6      31 ..     397     422 ..     396     422 .. 0.92
  10 !   10.9   0.0   0.00067       0.6       1      32 [.     426     458 ..     426     459 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0043
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPdS 33 
                  ++++ + + l  +d+A+ a+er ++  P+S
  CCE31159.1 110 WLQIGSCSEVLRLPDEAMHAYERALQANPNS 140
                 6889999999889*****************9 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.43
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerlik 28 
                 +++++     dkAle+++ +++
  CCE31159.1 148 GMLLKGREAFDKALEYFRAIVQ 169
                 66666534889*******9987 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerli 27 
                 +l+ +y+++   +kA +a+++ +
  CCE31159.1 180 NLGHCYLMTEALQKAYDAYQQAL 202
                 5899***966**********986 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   4 yklalsyrklgdtdkAlealerlikeYPd 32 
                 y ++ +y + + +d A ea+ ++ +  Pd
  CCE31159.1 215 YGIGILYDRYTSYDYAEEAFSQVMQIQPD 243
                 99*******77*************99997 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.35
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAleale 24 
                 +++l+  y+++++  ++le ++
  CCE31159.1 251 YFRLGIIYKQQNKFLQSLECFR 272
                 89********999999999987 PP

  == domain 6  score: 15.2 bits;  conditional E-value: 2.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPdS 33 
                  ++++  +++++d + A++a++r+++  P++
  CCE31159.1 288 WFQIGHVHEQQKDFESAKAAYQRVLDHSPNH 318
                 699***********************99985 PP

  == domain 7  score: -0.3 bits;  conditional E-value: 2.4
                 HHHHHHHHH....HHHHHHHHHHHH CS
       TPR_6   5 klalsyrkl....gdtdkAlealer 25 
                 +l++++ ++    +  d+A+++le+
  CCE31159.1 324 QLGWLHHQQsnafDTQDRAIQYLEK 348
                 678888877776544569**99997 PP

  == domain 8  score: 15.8 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlik 28 
                 + y+l+++y +++++ kA ea+++ + 
  CCE31159.1 359 SWYLLGRCYMAQQKYPKAYEAYQQAVY 385
                 68*********88***********875 PP

  == domain 9  score: 10.0 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYP 31 
                 ++ +y++ +++++Al+a+ r i+  P
  CCE31159.1 397 IGVLYYQINQYRDALDAYSRAIRLNP 422
                 799****88*************9877 PP

  == domain 10  score: 10.9 bits;  conditional E-value: 0.00067
                 HHHHHHHHHHHH.HHHHHHHHHHHHHHHHH-TT CS
       TPR_6   1 dAlyklalsyrk.lgdtdkAlealerlikeYPd 32 
                 ++ y l+ +y++  ++ ++Al+a++r  +  P+
  CCE31159.1 426 EVWYDLGTLYEScNNQVADALDAYQRAAELDPG 458
                 57899*********************9998886 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.2   0.00049      0.44       8      76 ..     112     172 ..     107     173 .. 0.75
   2 !   16.8   1.5     7e-06    0.0063       6      72 ..     144     202 ..     140     207 .. 0.79
   3 !   10.4   1.0   0.00068      0.61       5      75 ..     177     241 ..     174     243 .. 0.76
   4 ?    5.3   0.0     0.026        24      19      68 ..     227     271 ..     211     272 .. 0.75
   5 !   18.2   0.3   2.5e-06    0.0022       6      73 ..     288     351 ..     284     355 .. 0.79
   6 !   25.5   1.4   1.4e-08   1.2e-05       3      74 ..     357     420 ..     355     422 .. 0.87
   7 ?    6.3   0.2     0.013        12      45      74 ..     425     455 ..     421     458 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00049
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +++++   l   deA   +e+al++      p++     +++++g+l+  ++ +++Ale+++  ++i++
  CCE31159.1 112 QIGSCSEVLRLPDEAMHAYERALQAN-----PNS---TVAMNAIGMLLKGREAFDKALEYFRAIVQIDQ 172
                 55666666666667777777776666.....665...689*********************98888876 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 7e-06
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 +n ++++l  ++ +d+Ale++++ ++i ++          ++  nLg +y++++ +++A +++++al
  CCE31159.1 144 MNAIGMLLKGREAFDKALEYFRAIVQIDQN--------NGEAWGNLGHCYLMTEALQKAYDAYQQAL 202
                 445777777777777777777777777754........45689***********************8 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00068
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 a+ nl+++++  + +++A + +++al       +p+        +++g+ly++   y+ A+e++ ++++i 
  CCE31159.1 177 AWGNLGHCYLMTEALQKAYDAYQQALVNL---RDPKD---PMLWYGIGILYDRYTSYDYAEEAFSQVMQIQ 241
                 78899999999999999999999996555...44555...4468888888888888888888888888775 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.026
      TPR_12  19 ydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 yd A+e + ++++i+     pd + + ++++ Lg++y +++++ + le +
  CCE31159.1 227 YDYAEEAFSQVMQIQ-----PDFEKANEIYFRLGIIYKQQNKFLQSLECF 271
                 666777777777777.....666666689999999999999999998887 PP

  == domain 5  score: 18.2 bits;  conditional E-value: 2.5e-06
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgr....yeeAlelleeala 73 
                 + ++++v+ ++++++ A + ++++l+       p+h   a +l+ Lg+l++++ +    ++ A+++le+++ 
  CCE31159.1 288 WFQIGHVHEQQKDFESAKAAYQRVLDHS-----PNH---AKVLQQLGWLHHQQSNafdtQDRAIQYLEKSVS 351
                 5578999999999999999999998888.....888...99********99887644444788888888876 PP

  == domain 6  score: 25.5 bits;  conditional E-value: 1.4e-08
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 a++++ l+ +++++++y +A e +++a  ++r    +++    t  + +g ly++ ++y++Al+++ +a+++
  CCE31159.1 357 AQSWYLLGRCYMAQQKYPKAYEAYQQA--VYR-E--GKN---PTFWCSIGVLYYQINQYRDALDAYSRAIRL 420
                 778999*********************..553.2..555...5699***********************987 PP

  == domain 7  score: 6.3 bits;  conditional E-value: 0.013
      TPR_12  45 attlrnLgrly.ralgryeeAlelleealai 74 
                 +++ ++Lg+ly +  ++ ++Al+++++a ++
  CCE31159.1 425 SEVWYDLGTLYeSCNNQVADALDAYQRAAEL 455
                 5667899999956999999999999999887 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00085      0.76      11      61 ..     123     173 ..     118     179 .. 0.91
   2 !    9.8   0.1   0.00093      0.84       3      68 ..     183     250 ..     181     255 .. 0.86
   3 ?    0.9   0.0      0.57   5.1e+02      35      60 ..     254     279 ..     247     290 .. 0.80
   4 !   11.2   0.1   0.00034       0.3       3      42 ..     293     332 ..     291     359 .. 0.82
   5 !    9.0   0.1    0.0017       1.5      12      59 ..     340     387 ..     330     393 .. 0.90
   6 !   17.6   0.1   3.4e-06    0.0031       3      60 ..     365     422 ..     363     426 .. 0.95
   7 !   14.5   1.0   3.2e-05     0.029       4      69 ..     400     466 ..     397     470 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       TPR_9  11 weralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                  ++a+ ++er l+ +P++       G+ll  ++++ +Al+ + a ++++ +
  CCE31159.1 123 PDEAMHAYERALQANPNSTVAMNAIGMLLKGREAFDKALEYFRAIVQIDQN 173
                 5789***************************************99987765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00093
       TPR_9   3 aiaireedweralavverllll..aPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeai 68 
                 ++++  e  ++a  +++  l+   +P+dp +++  G+l+ +   +  A +++ + ++++pd + a  i
  CCE31159.1 183 HCYLMTEALQKAYDAYQQALVNlrDPKDPMLWYGIGILYDRYTSYDYAEEAFSQVMQIQPDFEKANEI 250
                 677888889999988887776557************************************98877665 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.57
       TPR_9  35 RGlllaqlGclsaAladLeaylalap 60 
                  G+++ q++ + + l+++ + ++  p
  CCE31159.1 254 LGIIYKQQNKFLQSLECFRYIVHSPP 279
                 69999999999999999988776544 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 0.00034
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaql 42 
                 +++ +++d+e a a+++r+l   P+++  +   G l++q+
  CCE31159.1 293 HVHEQQKDFESAKAAYQRVLDHSPNHAKVLQQLGWLHHQQ 332
                 7899******************************999886 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.0017
       TPR_9  12 eralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylala 59 
                 +ra++++e  +  + +d++ ++  G++++ +  + +A ++ ++++  +
  CCE31159.1 340 DRAIQYLEKSVSADNQDAQSWYLLGRCYMAQQKYPKAYEAYQQAVYRE 387
                 79***************************************9998555 PP

  == domain 6  score: 17.6 bits;  conditional E-value: 3.4e-06
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 ++++ ++++++a ++++  ++   + p  +   G+l++q ++++ Al++  ++++l+p
  CCE31159.1 365 RCYMAQQKYPKAYEAYQQAVYREGKNPTFWCSIGVLYYQINQYRDALDAYSRAIRLNP 422
                 689***************************************************9988 PP

  == domain 7  score: 14.5 bits;  conditional E-value: 3.2e-05
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlG.clsaAladLeaylalapdapdaeair 69 
                 ++ + +++  al ++ r + l+P   e ++d G l++  + +++ Al++ +++++l+p +p + a  
  CCE31159.1 400 LYYQINQYRDALDAYSRAIRLNPFISEVWYDLGTLYESCNnQVADALDAYQRAAELDPGNPHIKARL 466
                 57788999*****************************985279***************888876644 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.5   2.3e+03      13      26 ..     121     134 ..     110     140 .. 0.75
   2 ?    0.9   0.0      0.64   5.8e+02       5      24 ..     147     166 ..     143     175 .. 0.74
   3 ?    5.7   0.0      0.02        18       1      34 [.     177     210 ..     177     212 .. 0.87
   4 ?    2.9   0.0      0.15   1.3e+02       2      23 ..     251     272 ..     250     280 .. 0.90
   5 !   10.4   0.0   0.00061      0.55       2      35 ..     288     319 ..     287     320 .. 0.93
   6 ?    0.8   0.2      0.73   6.6e+02      16      25 ..     340     349 ..     321     357 .. 0.61
   7 !   13.8   0.1     5e-05     0.045       1      29 [.     359     385 ..     359     392 .. 0.87
   8 !    9.6   0.0    0.0011      0.96       2      34 ..     394     424 ..     394     426 .. 0.90
   9 ?    5.2   0.0     0.028        25       2      34 ..     428     459 ..     427     461 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.5
       TPR_7  13 GdyeeAielyeqsL 26 
                 +  +eA   ye++L
  CCE31159.1 121 RLPDEAMHAYERAL 134
                 556899999***76 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.64
       TPR_7   5 LarlysrlGdyeeAielyeq 24 
                 ++ l   +  +++A+e++++
  CCE31159.1 147 IGMLLKGREAFDKALEYFRA 166
                 55555556679*******97 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.02
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 a+ nL+++y      ++A + y+q+L+  +dp d
  CCE31159.1 177 AWGNLGHCYLMTEALQKAYDAYQQALVNLRDPKD 210
                 789*********************9977777766 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.15
       TPR_7   2 LlnLarlysrlGdyeeAielye 23 
                 +++L+ +y +++++ + +e+++
  CCE31159.1 251 YFRLGIIYKQQNKFLQSLECFR 272
                 789***********99999987 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00061
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdpeda 35 
                 +++++++++++ d+e A   y++  +l+ +p++a
  CCE31159.1 288 WFQIGHVHEQQKDFESAKAAYQR--VLDHSPNHA 319
                 5789*******************..*****9987 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.73
       TPR_7  16 eeAielyeqs 25 
                 ++Ai+++e+s
  CCE31159.1 340 DRAIQYLEKS 349
                 7889998884 PP

  == domain 7  score: 13.8 bits;  conditional E-value: 5e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLalt 29 
                 +++ L+r+y ++++y +A e y+q  a+ 
  CCE31159.1 359 SWYLLGRCYMAQQKYPKAYEAYQQ--AVY 385
                 6899********************..765 PP

  == domain 8  score: 9.6 bits;  conditional E-value: 0.0011
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 ++ +++ly + ++y++A++ y +  a++  p++
  CCE31159.1 394 WCSIGVLYYQINQYRDALDAYSR--AIRLNPFI 424
                 5899*******************..99998876 PP

  == domain 9  score: 5.2 bits;  conditional E-value: 0.028
       TPR_7   2 LlnLarlysr.lGdyeeAielyeqsLaltkdped 34 
                 ++ L+ ly++  ++ ++A++ y++  a + dp++
  CCE31159.1 428 WYDLGTLYEScNNQVADALDAYQR--AAELDPGN 459
                 567999****9999**********..88888876 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   1.0    0.0029       2.6       6      80 ..     124     199 ..     119     207 .. 0.72
   2 !    7.6   0.4    0.0049       4.4       4      63 ..     156     215 ..     153     237 .. 0.72
   3 ?    0.2   0.0         1     9e+02      29      57 ..     291     320 ..     281     328 .. 0.80
   4 !   33.0   2.3   5.8e-11   5.2e-08       6      81 ..     340     416 ..     337     417 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0029
                 HHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3   6 knAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 ++A+  +er+l+a+++s  +  + +  l  ++ +++A+e++r   +++ ++ +++  +++c+l  + +++A++a++
  CCE31159.1 124 DEAMHAYERALQANPNSTVAMNAIGMLLKGREAFDKALEYFRAIvQIDQNNGEAWGNLGHCYLMTEALQKAYDAYQ 199
                 5788889999988888888877777777777777777777777777777777777777777777777777776665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0049
                 -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHH CS
      ANAPC3   4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrkaklnskslgcrylfA 63 
                 ++++A+ ++  +++ ++++ e+   l+ c++ ++  ++Ay+ +++a  n ++++  +l+ 
  CCE31159.1 156 AFDKALEYFRAIVQIDQNNGEAWGNLGHCYLMTEALQKAYDAYQQALVNLRDPKDPMLWY 215
                 677788888888877777777777788888888888888888888877777777777766 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-HH CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnskslg 57 
                  + ++ +++++++A   +++  +  +++ +
  CCE31159.1 291 IGHVHEQQKDFESAKAAYQRVlDHSPNHAK 320
                 57889999******9999999777777765 PP

  == domain 4  score: 33.0 bits;  conditional E-value: 5.8e-11
                 HHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   6 knAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 + Ai ++e+ ++a+++++++ yll+ c+  +++y +Aye +++a   ++k++  +  ++  ++++++y +A++a+++
  CCE31159.1 340 DRAIQYLEKSVSADNQDAQSWYLLGRCYMAQQKYPKAYEAYQQAvYREGKNPTFWCSIGVLYYQINQYRDALDAYSR 416
                 68999********************************************************************9875 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0018       1.6      95     182 ..     230     320 ..     225     326 .. 0.61
   2 !   18.8   3.6   1.2e-06    0.0011      84     178 ..     293     389 ..     284     406 .. 0.80
   3 ?   -1.4   0.1       1.8   1.6e+03     160     179 ..     440     459 ..     435     470 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0018
      TPR_21  95 AkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakkeeafaalvae....lrGDilvaqgkldeAraaYqaAlaaleekare 182
                 A++++++v++ ++d e ++ +  RL  ++ +++k+ + l+      ++    l +e      G ++ +q++++ A+aaYq+ l++  ++a +
  CCE31159.1 230 AEEAFSQVMQIQPDFEKANEIYFRLGIIYKQQNKFLQSLECFRYIVHSPPGPLTQEdiwfQIGHVHEQQKDFESAKAAYQRVLDHSPNHA-K 320
                 55555555555555555555556666666666666666655544444333333333222235999999999999*****99999988885.3 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.2e-06
      TPR_21  84 kaaveagdlaaAkaqLewvlekakdeelkalarlR.Larvl.laekkydeAlktL.eakkeeafaalvaelrGDilvaqgkldeAraaYqaAlaalee 178
                 ++  +++d+++Aka++++vl++++++  k l +l  L   +  a +  d+A++ L +++++++ +a+   l G  ++aq k  +A +aYq+A+ + ++
  CCE31159.1 293 HVHEQQKDFESAKAAYQRVLDHSPNH-AKVLQQLGwLHHQQsNAFDTQDRAIQYLeKSVSADNQDAQSWYLLGRCYMAQQKYPKAYEAYQQAVYREGK 389
                 566799*****************998.4444444313322213446789******4456778999***************************987665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.8
      TPR_21 160 gkldeAraaYqaAlaaleek 179
                 ++ ++A +aYq+A +    +
  CCE31159.1 440 NQVADALDAYQRAAELDPGN 459
                 6789999*****98766555 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0012       1.1      93     191 ..     194     291 ..     183     293 .. 0.90
   2 ?    8.8   0.1   0.00096      0.86     143     189 ..     282     328 ..     225     335 .. 0.75
   3 ?   10.6   0.8   0.00027      0.24     122     180 ..     332     391 ..     329     394 .. 0.83
   4 ?    3.7   0.0     0.034        30     144     178 ..     389     423 ..     387     431 .. 0.90
   5 ?    6.1   0.0    0.0062       5.5     155     186 ..     435     466 ..     424     469 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
      TPR_15  93 pkeaarlaekgwrrfrsprlLssalellerakdydriaellkslee.eeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWll 190
                 + +a++ a+   r  ++p l++    l++r   yd  +e + ++++ ++++e+   ++++++ +y+q+++  ++l+++r  +  +p+   l ++ +W+ 
  CCE31159.1 194 AYDAYQQALVNLRDPKDPMLWYGIGILYDRYTSYDYAEEAFSQVMQiQPDFEKANEIYFRLGIIYKQQNKFLQSLECFRYIVHSPPG--PLTQEDIWFQ 290
                 45677777777777899999**999********************87999*************************************..9999999997 PP

      TPR_15 191 i 191
                 i
  CCE31159.1 291 I 291
                 7 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00096
      TPR_15 143 eqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWl 189
                   ++ +++  + +++q+ + + A  +y+++l+ +p+ +++ ++l Wl
  CCE31159.1 282 LTQEDIWFQIGHVHEQQKDFESAKAAYQRVLDHSPNHAKVLQQLGWL 328
                 468889************************************99997 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00027
      TPR_15 122 rakdydriaellksleeeeaae.qsaafllaraelyrqegqtdaAlrdyreAlalapdss 180
                 +++++d+ ++ +++le+   a  q+a+ ++++++ y ++ +  +A ++y++A+ +++++ 
  CCE31159.1 332 QSNAFDTQDRAIQYLEKSVSADnQDAQSWYLLGRCYMAQQKYPKAYEAYQQAVYREGKNP 391
                 66777777888889886555444******************************9998875 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.034
      TPR_15 144 qsaafllaraelyrqegqtdaAlrdyreAlalapd 178
                 ++++f+   + ly q +q  +Al +y +A++l+p 
  CCE31159.1 389 KNPTFWCSIGVLYYQINQYRDALDAYSRAIRLNPF 423
                 5799***************************9985 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0062
      TPR_15 155 lyrqegqtdaAlrdyreAlalapdsselraal 186
                 +++ ++q ++Al +y++A +l+p++  ++a+l
  CCE31159.1 435 YESCNNQVADALDAYQRAAELDPGNPHIKARL 466
                 4455678899******************9986 PP

>> ASC  Amiloride-sensitive sodium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   6.3   3.7e-05     0.033      89     147 ..      18      77 ..       3     243 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
         ASC  89 daeeseeekikksdaesekkkksasskekedaselakr.nlkfakaaksskflrelghel 147
                 ++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++++ 
  CCE31159.1  18 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQqQQQQQQQQQQQQQQQQQQQQQ 77 
                 111111111111111111111111111111111111111111111111111111111111 PP

>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.3   0.00018      0.16     158     223 ..      23      83 ..       7     349 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
   Mem_trans 158 efpdtaasivsikvdsdvvsldgrkpleteaeikedgklhvtvrksnasrsdivssstprpsnltn 223
                 +++++ ++ ++++++++  +++++++ +++++     + + + ++  ++++++ ++++++++++ +
  CCE31159.1  23 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ-----QQQQQQQQQQQQQQQQQQQQQQQQQQQHQ 83 
                 22211111111111111111111111111111.....11111111111111111111111111111 PP

>> AP-5_subunit_s1  AP-5 complex subunit sigma-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  25.7   0.00076      0.68      28     122 ..      28     120 ..      11     139 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00076
  AP-5_subunit_s1  28 ekdeseeereeadeeerllrkeqiavvarqvksecalkrqasgrpvvedllsalseeeialaeaeeGvfrLeegdpfkeekivlWlgvgslgft 121
                      ++++++++++++++++++ +++q +  ++q +++ + ++q+++++  ++ ++++++ ++a+++ ++G f  ++   + + + ++Wl++gs++ +
       CCE31159.1  28 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQAAVASQNIQSGHF--APSHQVAAMNEAVWLQIGSCSEV 119
                      2222222222222222222223333333333333334444555555666777888888899999***99..58888999***********9877 PP

  AP-5_subunit_s1 122 l 122
                      l
       CCE31159.1 120 L 120
                      6 PP

>> Membralin  Tumour-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  17.7   0.00056       0.5      93     203 ..      12     124 ..       1     174 [. 0.49

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00056
   Membralin  93 essekeeesekkisisenkkvllkeasvtlleesvlevsleaeeeekessslkkeeelrsveliensslktnlklledleisele...edeevkpeeey 188
                 + ++++++++++ +++++++ ++++++++++++++++ +++++++++++++  ++++ +++++ ++++ +++  ++ +++i++ +   +++ +  +e  
  CCE31159.1  12 QLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ-QQQQQQQQQQQQQQQQQQHQAAVASQNIQSGHfapSHQVAAMNEAV 109
                 3333333333332222222222222222222222222222222222222222.2222222222222222223333333333333122333344455555 PP

   Membralin 189 iveYsleygfLrlsp 203
                  ++     ++Lrl+ 
  CCE31159.1 110 WLQIGSCSEVLRLPD 124
                 556666666666655 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  10.9    0.0011      0.97     229     287 ..      21      82 ..       4     171 .. 0.44

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0011
  Pkinase_fungal 229 ka.ekfrskrkvvsssssqe.......lsskaevklkksesskkvekrsvdssvstskrsrlenrvh 287
                     ++ ++ +++++ +++    +       + ++++ ++++++ ++++++++ +++++++++++ +++ h
      CCE31159.1  21 QQqQQQQQQQQQQQQ----QqqqqqqqQ-QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQH 82 
                     110111111111111....011111111.11111111111111111111111111111111112222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (928 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      5718  (0.318925); expected 358.6 (0.02)
Passed bias filter:                     1596  (0.0890178); expected 358.6 (0.02)
Passed Vit filter:                      1169  (0.0652016); expected 17.9 (0.001)
Passed Fwd filter:                       315  (0.0175693); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 3.06u 0.46s 00:00:03.52 Elapsed: 00:00:00.76
# Mc/sec: 3678.51
//
Query:       CCE31160.1  [L=391]
Description: probable 60s ribosomal protein l3 (rpl3) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.3e-183  610.1  10.5   1.4e-183  610.0  10.5    1.0  1  Ribosomal_L3  Ribosomal protein L3


Domain annotation for each model (and alignments):
>> Ribosomal_L3  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  610.0  10.5    8e-188  1.4e-183       1     369 []       1     367 [.       1     367 [. 0.99

  Alignments for each domain:
  == domain 1  score: 610.0 bits;  conditional E-value: 8e-188
                   XX.S.SXXXXSSXCCCTTXSBXSXSSXXXSX.XXSBTTTTTXBSEEEEEEEEEEEEEEECHHTTSCCCCCEEEEEEEEEEC--EEEEEEEEEEEETT CS
  Ribosomal_L3   1 mshrkfeaprhgslGflprkRaerergkvksfPkddtskpvkltaflGyKaGmthiVrevdkpgskldkkevveavtvvetppmvivgvvgyvetpr 97 
                   mshrkfeaprhgsl flprkRa+r+rgkvksfPkdd +kpv+lta +GyKaGmt+iVr++d+pg+k +kkevveavtvv+tppm +vg+vgy+etpr
    CCE31160.1   1 MSHRKFEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLDRPGAKANKKEVVEAVTVVDTPPMIVVGLVGYIETPR 97 
                   9************************************************************************************************ PP

                   EEEEEEEEESSS.SHHHHCCCSTSTTTSSSSSSHCCCCHCSSCCCCCCHHHHHHHHHHSCSCEEEEEEEECCCSS-SCCSSHHEEEEECHCSCHHHH CS
  Ribosomal_L3  98 GlrslktvwaehlseevkrrlyknwykskkkaftkyskkyeskdvkklieadleeikkeasvvrviahtvirktkslaqKkahllEiqvngGtiaek 194
                   Glrsl+tvwaehls+evkrr+yknwykskkkaftky+k++ s+++ ++i ++le+ikk+++vvrv+aht+irkt+ l+qKkahl+Eiq+ngG+ia+k
    CCE31160.1  98 GLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYAKQH-SDNKGASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQINGGSIADK 192
                   ***************************************9.6777899***************************.********************* PP

                   HHHHHHCCTCEEECCCCS-TTSEEEEEEEE---EEE-HHHHCT----STTTSSSSSS-S-SS-SSSSS--TTS--SEEESCCEEEEEEEEEEEEETT CS
  Ribosomal_L3 195 ldfarealektvavaavFrqgeliDvigvtkGkGfeGvvkRWgvkklprkthrglRkvaaigawdparVsstvaraGqkGyhhRtelnkkiyrigkg 291
                   + f ++ +ek v ++++F+q+e+iDvi+vtkG+G++Gv++RWg+kklprkth+glRkva+igaw+p++V++tvaraGq+GyhhRt++n+k+yrigk 
    CCE31160.1 193 VSFGQDLFEKPVSIDSIFEQDEMIDVIAVTKGHGYNGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKA 289
                   ************************************************************************************************9 PP

                   TSSTTTSSTTT.SS..SS.TTTCTTCB..TSCEEEEES--SSSTTEEEEEEE-SSGGGSCCCSS-EEEEEE-TTCTSS CS
  Ribosomal_L3 292 edaknastefdltekeitPmGGfvhyGevkndfilvkGsvpGpkkrlvklrkslltqtsrkaeeevslkfidtaskfg 369
                   + + naste d t+k+itPmGGfv+yG v+ndf+++kGs+pG kkr+++lrks+ t+tsr+a+e+++lk+idt+s+fg
    CCE31160.1 290 DAEDNASTEIDITKKKITPMGGFVRYGSVNNDFVMLKGSIPGVKKRVMTLRKSMFTHTSRRALEKINLKWIDTSSEFG 367
                   9999************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2848.34
//
Query:       CCE31161.1  [L=164]
Description: uncharacterized protein CPUR_05012 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1228.45
//
Query:       CCE31162.1  [L=521]
Description: related to anthranilate synthase component I [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-93  313.2   0.0    3.1e-91  305.5   0.0    2.1  2  Chorismate_bind  chorismate binding enzyme
    6.9e-27   94.4   0.1    5.5e-23   81.8   0.0    3.7  3  Anth_synt_I_N    Anthranilate synthase component I, N termina


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0011       9.7      19      77 ..      24      88 ..      11     100 .. 0.74
   2 !  305.5   0.0   3.4e-95   3.1e-91       2     258 .]     233     496 ..     232     496 .. 0.97

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0011
                     TS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEE......EETTEEEEEEESSEEEEE CS
  Chorismate_bind 19 gdlykvvlsrrlkaeleaavdplalyralrarnpapysfll......eledsellgaSPElllkv 77
                     g+ +k++l   ++  +++ ++p a+y ++ a++++ ysfl+      ++++++++ga P  +l +
       CCE31162.1 24 GSAKKATLVPVYRQISSDLITPSAAYLKISAASSSDYSFLFesaateQVGRYSFVGAGPRKVLAT 88
                     666677766666666677899********************665555444489999999877765 PP

  == domain 2  score: 305.5 bits;  conditional E-value: 3.4e-95
                      HCHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECEEEEEEHS CS
  Chorismate_bind   2 redYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkveggrrietepiaGTrarg 95 
                      ++ Y+++v+k+ke+i +gd++++v+s+r+  +  ++++p+++yr+lr+ np+py f+++++d++++gaSPEll+k e+g ri t+piaGT +rg
       CCE31162.1 233 QAGYEAHVTKLKEHIVKGDIFQCVPSQRFARP--TSLHPFNIYRHLRTVNPSPYLFYVNCKDFQIVGASPELLVKSEAG-RIITHPIAGTVKRG 323
                      679*****************************..99*****************************************77.************** PP

                      SSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESHHH CS
  Chorismate_bind  96 ktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkkr 189
                      +tpeed++l++el+++ K+raEh+m+vdl+rnd+++v  p sv+v++l+ ve++s+v+hlvs+++g l++d++ +d+++++fP+g+v+GaPk r
       CCE31162.1 324 STPEEDQRLADELSSSLKDRAEHVMLVDLARNDINRVGDPYSVRVDRLMVVEKFSHVQHLVSQVSGVLRPDKTRFDAFRSVFPAGTVSGAPKVR 417
                      ********************************************************************************************** PP

                      HHHHHHHHSSS--TTTTSEEEEEETTS-..........EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 190 ameiidelEearRgvYaGavgyldadge..........aelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      ame+i+elE+++RgvYaGavgy++  ++          +++++++Rt++vkd+ ++l+aG+GIv dSd  +E+ Et +K
       CCE31162.1 418 AMELIAELEKEKRGVYAGAVGYFGYGSQdenggavegaMDTCIALRTMLVKDGVAYLQAGGGIVFDSDEYDEWIETINK 496
                      ***********************985444678999999**************************************988 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   6.1e-27   5.5e-23       1     137 [.      41     170 ..      41     175 .. 0.88
   2 ?    1.2   0.0     0.044     4e+02      31      63 ..     291     323 ..     265     351 .. 0.67
   3 !    6.6   0.0   0.00097       8.7      88     102 ..     430     444 ..     390     458 .. 0.82

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 6.1e-27
  Anth_synt_I_N   1 ddltplsvylklaeee...hkflLeSaeneggegrySfigldpflelkskngevevegpegeeleeeepldalrellerfrsaedseptelpfvgG 93 
                    d  tp ++ylk+++ +   ++fl+eSa   ++ grySf+g+ p+ +          +g   +   e++pl al++ l+++  a+++  + +p++gG
     CCE31162.1  41 DLITPSAAYLKISAASssdYSFLFESAA-TEQVGRYSFVGAGPRKV--------LATG--PGYGPETDPLPALEAELAQHVVAHVPGLQLPPLTGG 125
                    56799*******9988999********7.6667**********333........3333..24456779***********9988888899******* PP

  Anth_synt_I_N  94 lvGylgYDlvreie.klpksakddlnlpdarlilydtlivfDhke 137
                    ++Gy+gYD+vr++e k  +  kd l++p+  ++l+dt+++fD  +
     CCE31162.1 126 AIGYVGYDCVRYFEpKTARPMKDVLQIPESLFMLFDTIVAFDRFY 170
                    ******************************************875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.044
  Anth_synt_I_N  31 grySfigldpflelkskngevevegpegeelee 63 
                      + ++g++p l +ks+ g++ ++   g+ ++ 
     CCE31162.1 291 KDFQIVGASPELLVKSEAGRIITHPIAGTVKRG 323
                    4689******99999999999988733333333 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.00097
  Anth_synt_I_N  88 lpfvgGlvGylgYDl 102
                      ++ G+vGy+gY  
     CCE31162.1 430 RGVYAGAVGYFGYGS 444
                    34899********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3919.55
//
Query:       CCE31163.1  [L=389]
Description: related to glucan 1,4-alpha-glucosidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.062   13.1   0.0       0.11   12.3   0.0    1.3  1  DUF4922   Domain of unknown function (DUF4922)


Domain annotation for each model (and alignments):
>> DUF4922  Domain of unknown function (DUF4922)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     6e-06      0.11     142     189 ..     292     339 ..     251     342 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6e-06
     DUF4922 142 yaegekklliSPgavdmaGliitpreeDfekltaeeieeilkevslse 189
                 y+ g++ +l  Pgav+  G+++tp  e  ++lt ++ ++i + +s+++
  CCE31163.1 292 YSGGATAILEMPGAVECPGVLVTPSIESSDSLTDASDQDISDSCSMTS 339
                 45678888999*****************************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 3408.51
//
Query:       CCE31164.1  [L=556]
Description: related to DNA Polymerase iota (POLI) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-38  131.6   0.0    3.4e-38  131.0   0.0    1.3  1  IMS       impB/mucB/samB family
      5e-12   46.6   0.1      1e-11   45.5   0.1    1.5  1  IMS_C     impB/mucB/samB family C-terminal domain


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.0   3.8e-42   3.4e-38       2     148 ..      13     210 ..      12     212 .. 0.95

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 3.8e-42
                 EETTHHHHHHHHHT.T-TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHTT.-EEEEEE-HHHHHHHHHHHHHHHHH-S...EEEEETT CS
         IMS   2 DmdaFyasverardpeLkgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklcpd.livvkvdlekyrraskkileilkrfis.pkvekasiD 98 
                 D+d+Fya+v + rdp+Lk++P+ v q+    +i+++++y+Ar+ Gvk+ m ++ea+klc+  + v   dl+++r++sk ++++l++++  +k e++++D
  CCE31164.1  13 DYDCFYAQVFENRDPSLKSMPLGVRQK----NILATCNYNARKLGVKKLMLVSEARKLCKGlVLVDGEDLSPFRDMSKILFNFLRSYSWnDKAERLGFD 107
                 99*************************....*****************************9455559********************87677******* PP

                 EEEEE-HHHHHHHH-S.....................................................HHHHHHHHHHHHHHHH---EEEEEESSHHH CS
         IMS  99 Eayldltgleelaese.....................................................gaalakelrkaikeelgltvsiGiasnkll 144
                 E+++d+t++++ + +                                                      g++la+ lr +i++++++t  +Gi++nkll
  CCE31164.1 108 EVFMDVTDIVDYNIEClstrnlshsffflskadpeagfpcdltnfsgcvegdipaeapldnklylrlllGSHLANFLRTQIETKFEYTSACGISTNKLL 206
                 ********7665554478889****************************************************************************** PP

                 HHHH CS
         IMS 145 AKla 148
                 +Kl+
  CCE31164.1 207 SKLV 210
                 **97 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.1   1.2e-15     1e-11       8     113 ..     324     467 ..     321     470 .. 0.76

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 1.2e-15
       IMS_C   8 pksissektfpepydesk...lkkelreLaeelarrLrdkgl................vartitlklrys..........dfh..asrsatL....... 68 
                 p +is+e+tf++         +++el++L+ +l+rrLr + l                 +rt++l++r +          + +   srs+ L       
  CCE31164.1 324 PSQISIEDTFKGLE---TvpqITEELHKLSCSLIRRLRVDLLsvdqhsdlpgaqkwiaRPRTLRLSIRSRtthqgisssqN-TrrVSRSGLLpsfvfdt 418
                 78*********933...2444889*************88886667777888888888899999999987755555544331.13455555556666666 PP

       IMS_C  69 .pr.ptsdtreileaalkLlrrlide..pglpirligvsasnlvekaes 113
                  ++    ++r+++e +  Llr+l  +  + +++ li+++a n+v  a++
  CCE31164.1 419 hGDiDAMAQRLVAESLFPLLRQLRGDkrSRWNLQLINICAANMVAGAGD 467
                 633133677777************99******************66655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4044.20
//
Query:       CCE31165.1  [L=669]
Description: uncharacterized protein CPUR_05016 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-96  322.5   0.0    4.4e-96  321.8   0.0    1.3  1  DUF726           Protein of unknown function (DUF726)
  ------ inclusion threshold ------
        2.1    9.0   5.4          5    7.7   5.4    1.5  1  FoP_duplication  C-terminal duplication domain of Friend of P


Domain annotation for each model (and alignments):
>> DUF726  Protein of unknown function (DUF726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.8   0.0  4.9e-100   4.4e-96      11     343 .]     304     646 ..     295     646 .. 0.94

  Alignments for each domain:
  == domain 1  score: 321.8 bits;  conditional E-value: 4.9e-100
      DUF726  11 lAglaGgaligltggLaaPlvaagigallaglGltgsaa..fLasvggsa.vitallgaagAklsvkkmkkrvkeikdFefiplseqirl......... 97 
                 l + +G++    +  La+ l   gig+  +glGlt++aa  +L+ +++   ++++l+g+  A+  +k +++   e++dF+fi l ++ +          
  CCE31165.1 304 LGSASGSSA---PLSLATSLRNVGIGTPQGGLGLTTTAAagLLGLMAENGfLMGSLFGMNSARPLGKMLESFLREVQDFAFIRLCNSLHYeytdpresp 399
                 544444432...44577777788999999999987766656********999************************************999******** PP

      DUF726  98 ...ksltvtvsislelsdeddvtapwralakaekdlYalkwEvelLkelGkaletilasealsvakqeilkrtvlaslvaaltWPlaLlkvakildnpw 193
                    ++l+v+v+is+ l + dd+ +pwr+l+ +  ++Ya++wE  +L++lG+alet+++s+a++ a ++i +rt++ sl+++  WP  Ll+++ki+dnpw
  CCE31165.1 400 vehRRLRVVVAISGCLLESDDIIKPWRSLNSQ-AEVYAIRWEIAALMNLGSALETVIKSTAWGRARRDIESRTIFQSLIDST-WPEPLLRISKIIDNPW 496
                 ******************************99.************************************************9.**************** PP

      DUF726 194 nvsleraakaGklLAdallsra.qGeRpvtLiGfslGARviyvCLlelakkkalglvenvillGaPvtteakvwlkvrsvvsgRlvnvysenDylLgfl 291
                  v++ ra+k+G +LAdal+ ++ qG Rpv LiGfsl AR+iy CL++la+++++g+v+ v++lG+P+++e++vwl+++svv+gRl+nvy+e+Dy+Lgfl
  CCE31165.1 497 GVGMVRAEKVGAVLADALIRQKfQGDRPVSLIGFSLAARAIYACLMVLAERRQFGVVDSVMMLGTPAPSESRVWLTLKSVVTGRLINVYCESDYILGFL 595
                 *****************9976526*************************************************************************** PP

      DUF726 292 yRtssaqfrvaglqrieldvekvenvdvselvegHldYrkklkkilkaigle 343
                 yRts++qf vaglq+i+ + ++ven  v  l + Hl+Y   + +il+ ig+e
  CCE31165.1 596 YRTSNTQFGVAGLQEIQ-GANGVENHCVKTLPREHLSYPSMMGTILRDIGWE 646
                 *****************.69*****************************996 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.4   0.00056         5      15      41 ..     155     181 ..     150     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00056
  FoP_duplication  15 ggrrgrgrggrggrggrgrgrggrggr 41 
                      +g+r+r+rg rgg++g++  rggrgg+
       CCE31165.1 155 SGSRTRRRGVRGGNRGGRSDRGGRGGA 181
                      578999999999999999999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 4967.28
//
Query:       CCE31166.1  [L=1173]
Description: uncharacterized protein CPUR_05017 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-57  194.7   0.0    2.1e-57  194.1   0.0    1.3  1  DENN         DENN (AEX-3) domain
    1.5e-15   56.9   0.3    2.9e-15   56.0   0.3    1.5  1  dDENN        dDENN domain
    4.2e-14   53.0   0.0    1.1e-13   51.7   0.0    1.8  1  uDENN        uDENN domain
    0.00084   19.6   5.6     0.0016   18.7   5.6    1.4  1  C1_2         C1 domain
     0.0046   16.8   4.1     0.0087   15.9   4.1    1.5  1  C1_1         Phorbol esters/diacylglycerol binding domain (C1
  ------ inclusion threshold ------
      0.021   14.9   1.7      0.041   14.0   1.7    1.4  1  Zf_RING      KIAA1045 RING finger
      0.025   14.5   0.0      0.049   13.6   0.0    1.4  1  SPA          Stabilization of polarity axis
      0.037   13.9   5.2      0.086   12.8   5.2    1.7  1  PHD          PHD-finger
       0.23   10.9   0.5       0.49    9.8   0.5    1.5  1  Leader_CPA1  arg-2/CPA1 leader peptide


Domain annotation for each model (and alignments):
>> DENN  DENN (AEX-3) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.1   0.0   1.1e-60   2.1e-57       1     185 [.     467     663 ..     467     664 .. 0.98

  Alignments for each domain:
  == domain 1  score: 194.1 bits;  conditional E-value: 1.1e-60
        DENN   1 yipkalcilsrlpffelf.kkiLkalekrlksssk............eaplesfianlllevplPapgktlklvslaveekillqrpe.dselPl.edv 84 
                 +ip+a+++l+r +    f k++L+ ++  ++++              ++ple++++nl++e+++P  +kt++   l+v+e +l++r+e  +elP  + +
  CCE31166.1 467 WIPRAYGVLGRDAACMGFwKEWLRSIVIPMTDGGVlrippsspkvgrWQPLERYVVNLCTEAFSPLGSKTQVE--LGVRELRLYARKEgLNELPGsRTI 563
                 89*********99988888***************99*************************************..9*******************9*** PP

        DENN  85 dlkelfrcLsienilqlfeavLlErriillSeklarLtsvaealvallyPlkWqhiyiPvlpaslldvleaPtPfiiGvesslleleekpledvvlvDl 183
                 dl++lfrcLs+en+++lfe++++E+rii+lS+++++L+ +++al++llyPlkW++i+iPvlpa+l+++leaP+P+i+Gve++++   + p +d+vlvDl
  CCE31166.1 564 DLYALFRCLSLENVVTLFEYAMSESRIIFLSSHTSMLHLACHALANLLYPLKWASIFIPVLPARLISALEAPCPYIVGVERRYER-IDLPDDDYVLVDL 661
                 *************************************************************************************.9************ PP

        DENN 184 dk 185
                 dk
  CCE31166.1 662 DK 663
                 *8 PP

>> dDENN  dDENN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.3   1.5e-18   2.9e-15       1      49 [.    1002    1050 ..    1002    1051 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 1.5e-18
       dDENN    1 FdkeaFlksqpkshrpFlsrfletQmFarFIderlelsgsdpsldlFDe 49  
                  Fd+++F+ks p +++++ +++++tQ+F++FI++r++l +sdp+++lFDe
  CCE31166.1 1002 FDMDGFIKSLPYDQQEYATMMRDTQAFNEFIHDRETLPASDPNIRLFDE 1050
                  9************************************9999*******8 PP

>> uDENN  uDENN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   5.6e-17   1.1e-13       1      65 [.     294     360 ..     294     361 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 5.6e-17
       uDENN   1 PevldryPpadhe.......dfppedvplFcfPeglewsssteksserpepefFsFvLTdedgsrvYGaClt 65 
                 P++ldryPp++          fp + vp+F+fP+++    ++ +s++rp+++++ F++T+ed++++YG++++
  CCE31166.1 294 PVLLDRYPPKSATdelakrgRFP-DYVPMFAFPNDI----QIVSSDDRPRSTWHGFTMTREDNAKLYGISII 360
                 89*******65553334332444.44********95....7789999**********************975 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   5.6     8e-07    0.0016       5      46 ..     911     950 ..     907     951 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 8e-07
        C1_2   5 HpLtlskgedssesfnCsaCgrkidgff.YsCseCdfslhvrC 46 
                 H  +l+    ++++ +C +C++k++++  Y+C  C+ + h rC
  CCE31166.1 911 HCFSLN---ADDDQSTCTICDEKSEDDGfYECGACKTVAHGRC 950
                 566666...88999*********877778************** PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   4.1   4.4e-06    0.0087       1      51 [.     911     959 ..     911     961 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.4e-06
                 --EEEE--SS--B-TTT-SB--SSSS-EEEETTT--EE-CCCCTTS-SBTT CS
        C1_1   1 HhwvhrnfkqptfCkhCgeflwgkekqglkCswCkllvHkkChekvpkecg 51 
                 H+++    +++++C+ C+e    +    + C +Ck ++H +C+ +v+  c+
  CCE31166.1 911 HCFSLNADDDQSTCTICDEKS--EDDGFYECGACKTVAHGRCLGQVSLVCP 959
                 888888779999*********..777889******************9997 PP

>> Zf_RING  KIAA1045 RING finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.7   2.1e-05     0.041       5      38 ..     921     955 ..     917     968 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.1e-05
     Zf_RING   5 delCeiC.evytaeelypCRvCtkvfHegClrklg 38 
                 + +C+iC e  + +  y+C  C+ v H  Cl ++ 
  CCE31166.1 921 QSTCTICdEKSEDDGFYECGACKTVAHGRCLGQVS 955
                 579****667777889***************8865 PP

>> SPA  Stabilization of polarity axis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.5e-05     0.049      13      87 ..     575     642 ..     569     666 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-05
         SPA  13 peiillinalltskriivlstkasadevsefvLalsnlispagdvlrgfknnsfPyvdlseldalekvpgyIvGv 87 
                 +++ +l++  + + rii+ls+++s+  +  ++ al nl +p  +  + f    +P  +   ++ale+   yIvGv
  CCE31166.1 575 ENVVTLFEYAMSESRIIFLSSHTSM--LHLACHALANLLYP-LKWASIF----IPVLPARLISALEAPCPYIVGV 642
                 678899999****************..77778888899998.5555555....9********************9 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   5.2   4.3e-05     0.086       2      32 ..     924     953 ..     923     963 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSS CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkp 32 
                 C +C++ + e++ +  C  Ck+  H  Cl+ 
  CCE31166.1 924 CTICDE-KSEDDGFYECGACKTVAHGRCLGQ 953
                 ******.8899999**************975 PP

>> Leader_CPA1  arg-2/CPA1 leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.5   0.00024      0.49      14      23 .]    1101    1110 ..    1100    1110 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00024
                   HHHHHHHHHH CS
  Leader_CPA1   14 ISDHiWKasS 23  
                   ISDH+W++ S
   CCE31166.1 1101 ISDHMWRTAS 1110
                   9*******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.41
# Mc/sec: 8675.00
//
Query:       CCE31167.1  [L=842]
Description: uncharacterized protein CPUR_05018 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-74  251.4   0.0    1.6e-74  250.9   0.0    1.2  1  DUF974    Protein of unknown function (DUF974)
    2.3e-10   40.2   0.0    1.2e-07   31.4   0.0    2.4  2  KH_1      KH domain


Domain annotation for each model (and alignments):
>> DUF974  Protein of unknown function (DUF974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.9   0.0   1.7e-78   1.6e-74       1     245 [.     546     838 ..     546     839 .. 0.94

  Alignments for each domain:
  == domain 1  score: 250.9 bits;  conditional E-value: 1.7e-78
      DUF974   1 LtLPqsFGsiylGetFscylcvnnesae....................kevrdvrikaelqtpsqr...leLeeseeeekekelepgeslqkvvshelk 76 
                 L+LP+sFGs+y+GetFsc+lc+nn++++                    k++r+vri+ae++tps      +L+     +++++l+pge+lq+ v+++lk
  CCE31167.1 546 LNLPASFGSAYVGETFSCTLCANNDLPPpsaspsnspslsttaaasptKSIRHVRIEAEMKTPSLVgaaHKLSLGCPPTEGVDLAPGETLQRLVNFDLK 644
                 89**************************************************************98888566558899********************* PP

      DUF974  77 elGnhvLavtVsYteatkeasgrtrtfrKlYkFqvkkpLsVrtkvteleskeaal................................reevvLeaqleN 143
                 e+GnhvL vtVsY+eat e+sgrtrtfrKlY+F +k +L+Vrtkv++l    aa+                                 ++++LeaqleN
  CCE31167.1 645 EEGNHVLSVTVSYYEAT-ETSGRTRTFRKLYQFMCKASLIVRTKVGALGGVVAAEgegegegaskrssssdsssrrrrrrsssgggrGRKWILEAQLEN 742
                 ****************9.******************************9777777999****************************99*********** PP

      DUF974 144 vtedaivlekvklepeeglkaeslneeekeeeeeeeekeeekpvlqpgdvrqvlFlleeepkeeeaekeeeeakgrlilGkLdisWrsamGerGrLqTs 242
                  ++++++l++v++e +egl ++++n +   e+     ++ +kp+l+pg+v+qv+F+l+ +++     ++ e+++gr+ +G L i Wr+ mG+rG+++T+
  CCE31167.1 743 SSDETMQLDRVDMEVREGLVCRDCN-WGVREGGLGGPATVQKPILHPGEVEQVCFVLSLDEE-----RPAEAVDGRIMFGVLGIAWRGGMGSRGFITTG 835
                 *************************.886665554445569****************55555.....77899*************************** PP

      DUF974 243 qLs 245
                 qL+
  CCE31167.1 836 QLG 838
                 *97 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0   0.00097       8.7      18      65 ..     137     192 ..     136     193 .. 0.79
   2 !   31.4   0.0   1.3e-11   1.2e-07      12      63 ..     254     315 ..     244     318 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00097
                 GGHHHHHHHHHHT-EEEEES.STT..........T.-EEEEEE.SHHHHHHHHHHHH CS
        KH_1  18 gGsnIkeIreetgakIkvpk.sedeg.......sderevtisG.speavekAkelie 65 
                 +Gs+ k I eetga I+  + s  +        +++  ++i+  ++e+ ++A+++i+
  CCE31167.1 137 KGSTQKMIIEETGADIT-TRgSYLPNkamataaNPPLYLHITStTKEGLDAAVAKIN 192
                 89***************.633444446788888888888888888888888888887 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 1.3e-11
                 HHHHTGGGHHHHHHHHHHT-EEEEESSTT.............T.-EEEEEE.SHHHHHHHHHH CS
        KH_1  12 griIGkgGsnIkeIreetgakIkvpksedeg..........sderevtisG.speavekAkel 63 
                   i+G gGs +k+I++etg+++++  ++ +g          +++  +++ G +p+ v+kAkel
  CCE31167.1 254 AQIVGHGGSYVKHIQQETGCRVQIK-GRGSGyleggtnresDEDMFLHVAGpDPDMVDKAKEL 315
                 579********************88.555556899*****888889999************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 5361.60
//
Query:       CCE31168.1  [L=318]
Description: probable acetolactate synthase small subunit precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-14   53.9   0.0    1.7e-13   50.6   0.0    2.3  2  ALS_ss_C  Small subunit of acetolactate synthase
      2e-13   49.9   0.1    3.7e-13   49.0   0.1    1.5  1  ACT       ACT domain
    1.2e-07   31.5   0.0    2.1e-07   30.7   0.0    1.4  1  ACT_5     ACT domain
  ------ inclusion threshold ------
       0.14   12.2   0.0         10    6.2   0.0    2.5  2  ACT_6     ACT domain


Domain annotation for each model (and alignments):
>> ALS_ss_C  Small subunit of acetolactate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.19   8.3e+02       1      10 [.     162     171 ..     162     185 .. 0.85
   2 !   50.6   0.0   3.8e-17   1.7e-13      14      73 ..     232     291 ..     224     292 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.19
                 EEEEEEEEE. CS
    ALS_ss_C   1 RElaLiKVka 10 
                 REl+L K+++
  CCE31168.1 162 RELLLAKINT 171
                 9*******97 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 3.8e-17
                 HHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHS-GGGEEEEEEEEEEEEES CS
    ALS_ss_C  14 erseileiaeifrakivdvspdsliieltgteekidaliellkpfgilevvRtGrvAleR 73 
                 + + i  +a+ f +k++d+s+ s+i+e++ ++++id++++l+ pfgile +RtG +Al R
  CCE31168.1 232 HLKTITYFAHQFGGKVLDISTISCIVEISAKPSRIDSFLKLIAPFGILESARTGLMALPR 291
                 556788899*************************************************98 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.1   8.3e-17   3.7e-13       1      65 [.      81     145 ..      81     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 8.3e-17
                 EEEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTT CS
         ACT   1 tvlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkl 65 
                 ++l+++v+++PG+L+r++g+la rg+Nids+ +  +e +  +++++v+++ + ++e++ ++l++l
  CCE31168.1  81 HILNCLVQNEPGVLSRLSGILAARGFNIDSLVVCNTEVEDLSRMTIVLTGQDGVVEQARRQLEDL 145
                 689************************************************************98 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   4.6e-11   2.1e-07       2      57 ..      90     146 ..      89     151 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 4.6e-11
       ACT_5   2 apgvLeRvlrvvrrrgFevkslnmsttedggtvrieltVes.ersvelLsnQleKLi 57 
                 +pgvL R+ +++  rgF+++sl++  te ++ +r++++ ++ +  ve+ ++Qle L+
  CCE31168.1  90 EPGVLSRLSGILAARGFNIDSLVVCNTEVEDLSRMTIVLTGqDGVVEQARRQLEDLV 146
                 79***************************************************9776 PP

>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0023        10       9      30 ..      87     108 ..      81     113 .. 0.85
   2 ?    3.3   0.0     0.019        83      12      34 ..     229     251 ..     227     255 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0023
       ACT_6   9 GpdrpGltasLtsvlaefgvni 30 
                  ++ pG++++L+++la  g ni
  CCE31168.1  87 VQNEPGVLSRLSGILAARGFNI 108
                 5789************998887 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.019
       ACT_6  12 rpGltasLtsvlaefgvnilDie 34 
                 +  +++ +t   ++fg ++lDi 
  CCE31168.1 229 KHEHLKTITYFAHQFGGKVLDIS 251
                 56788999*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2603.08
//
Query:       CCE31169.1  [L=355]
Description: probable ornithine carbamoyltransferase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-44  151.1   0.4      3e-44  150.6   0.4    1.2  1  OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl
    6.2e-43  146.6   0.0    9.4e-43  146.0   0.0    1.2  1  OTCace    Aspartate/ornithine carbamoyltransferase, Asp/Orn b


Domain annotation for each model (and alignments):
>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.4   3.4e-48     3e-44       1     148 []      29     173 ..      29     173 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 3.4e-48
                 S-BSSGGGS-HHHHHHHHHHHHHHHHHHHT....TT-STTTTT-EEEEEESS--HHHHHHHHHHHHHTTSEEEEEESTTTSCTTTGGSTTSSCHHHHHH CS
    OTCace_N   1 rhllsledlskeeieelldlaaelkekvkk....ekkekllkgktlallFeepStRTrvSfevAakrlGgkvlslseaediqlssvskgrkEsleDtar 95 
                 rhl+++ dl+++e+++l+++aa+ k++vk+    ++ +++l+g+t+a++F+++StRTrvS+e+A+k lGg++++l+ ++diql+     ++Esl+Dt  
  CCE31169.1  29 RHLMTIGDLTPSEFTSLVRNAASRKQSVKAgqtpTQLSTSLSGQTVAMMFSKRSTRTRVSTEAAVKILGGHAMFLG-KDDIQLG-----VNESLYDTSV 121
                 8***************************998777788888************************************.88*****.....99******** PP

                 HHHHHTSEEEEEESSHHHHHHHHHHHSSEEEEEEETSSB-HHHHHHHHHHHHH CS
    OTCace_N  96 vlsryvdaiviRhpgaeeleelakyasvpviNagdgdgeHPtQaLaDlltire 148
                 v+s++++++v+R+  ++++ +lak++svpviNa+ +d+ HP+Q++aD+lti+e
  CCE31169.1 122 VISSMTSCMVARVGPHSDVATLAKHSSVPVINAL-SDDFHPLQTIADFLTIHE 173
                 **********************************.****************98 PP

>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   0.0   1.1e-46   9.4e-43       2     154 ..     190     344 ..     189     346 .. 0.89

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 1.1e-46
                 C.EEEEESSTTSHHHHHHHHHHHHCT-EEEEES-TTSSH-HHHHHHHHHHHHHHT...-EEEEESSCHHHHTT-SEEEE--SSETTCCGGHHHHHHHHC CS
      OTCace   2 glkiafvGdkknnvanslikllarlgmdvvlvaPkglepdkevleeakknakksg...gsititedleeavkgaDvvytdvwvsmgeekereerlkklk 97 
                 glk+a+vGd+ nnv+ +l++++++ g+d+++++Pkg+   +e ++++  +a+k     g++t t+ +eea+ +aD+++td+w+smg+e+e+++rlk+++
  CCE31169.1 190 GLKVAWVGDS-NNVLFDLAIGCVKSGVDISVASPKGYGI-PEHMRNLITSAAKGVvspGTLTETTVPEEAIRNADILVTDTWISMGQEAEKQKRLKAFA 286
                 99********.*************************776.44444444444443234599999************************************ PP

                 CCSB-HHHHH..HS-TT-EEEE-S---BTTTB-HHHHTSTTBHHHHHHHHHHHHHHHHH CS
      OTCace  98 dyqvteellk..lakkdaivlHcLPakrgeEvtdeVfdsprsvvfeqaeNrlhtikAll 154
                 +yq+t+el     ak+ ++++HcLP  ++eEv+deVf sprs+vf +aeNrl+++ A l
  CCE31169.1 287 GYQITKELATkgGAKEGWKFMHCLP-RHQEEVADEVFYSPRSLVFPEAENRLWAAVAAL 344
                 ********995669999********.779************************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2749.00
//
Query:       CCE31170.1  [L=851]
Description: uncharacterized protein CPUR_05021 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-07   31.8   0.0    0.00019   21.7   0.1    2.9  2  DUF3712   Protein of unknown function (DUF3712)
  ------ inclusion threshold ------
      0.035   14.5   0.1      0.063   13.7   0.1    1.3  1  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-


Domain annotation for each model (and alignments):
>> DUF3712  Protein of unknown function (DUF3712)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00073       6.5      24      97 ..     358     438 ..     332     475 .. 0.72
   2 !   21.7   0.1   2.1e-08   0.00019      18     124 ..     514     628 ..     495     629 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00073
     DUF3712  24 qtlditdvdaftkflealvlseefklsvkGkttlklgglkfkgvtldKtvtlk......Glnslk.gfsiedlqlllpdp.e 97 
                 q ++ +d + ++ f++  ++ ++++l v+Gk   + g+l+    ++  +vtl+      +l ++  +f++ed++++lp+p +
  CCE31170.1 358 QACPSSDLSPLDHFMKHYLHGDNAELFVRGK-APETGDLPGWMGDFIESVTLPiqfpgrSLENFLrNFTLEDVDFTLPSPfA 438
                 6778899999********************9.4445555444445555555555555556999999***********99973 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 2.1e-08
     DUF3712  18 ttglvdqtlditdvdaftkflealvlsee.fklsvkGk...t.tlklgglkfkgvtldKtvtlkG..lnslkgfs..iedlqlllpdpedginllatvt 107
                 t++++++ +di+d d+f++ ++ l++ +e + l v+++   + t+ lg+l + +v+   +v +k    + l g++  +   ++l+++ + gi ++a v+
  CCE31170.1 514 TSRIDNAPIDILDGDTFSDIMQELLFGDEdIILDVESNvdvKvTTVLGDLVIRRVPATGKVPVKHvpRDTLAGLEpqVGGSKILNTS-STGIRVRAMVN 611
                 67889*********************9999********999669999*****************64456666776779****99655.7********** PP

     DUF3712 108 lpNpsvvtielGnvtld 124
                   N +++t++++ ++++
  CCE31170.1 612 MTNSTPYTASIPLISIH 628
                 **********9988876 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     7e-06     0.063      41      82 ..      43      86 ..      28      92 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7e-06
     PBP1_TM 41 deedDdddddeeeevprkgkkkkpprkkrrw..lwlliklflvl 82
                d +d d + d++++ +r+ k+++++++k+rw  l  +i +  ++
  CCE31170.1 43 DTTDNDSQRDDDSTPARQIKDASKSKQKWRWpsLIAMIVMGTLV 86
                444555577777778899999999******95544444333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.40
# Mc/sec: 6384.59
//
Query:       CCE31171.1  [L=270]
Description: uncharacterized protein CPUR_05022 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2029.63
//
Query:       CCE31172.1  [L=655]
Description: uncharacterized protein CPUR_05023 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-183  611.2  57.7   2.7e-183  611.0  57.7    1.0  1  SART-1    SART-1 family


Domain annotation for each model (and alignments):
>> SART-1  SART-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  611.0  57.7  1.5e-187  2.7e-183       2     631 .]       4     619 ..       3     619 .. 0.86

  Alignments for each domain:
  == domain 1  score: 611.0 bits;  conditional E-value: 1.5e-187
      SART-1   2 lSiEEtNklRakLGLkPLe..ddekkeekskkeddeeedaastledreaeaeenvkkaqeeeakkkkreelkerikkarekrereaklkgktLge.ddd 97 
                  +iEEtN++R++LG+kPL+    +++++ +k+++++ +d+astle+r+ae++en+kk+q++ea+kkkree++++i+kar++++r a l+gk+Lge dd+
  CCE31172.1   4 ATIEETNRIRVSLGMKPLPvpGATSTAQPDKSSRSDGQDTASTLESRQAESYENYKKHQDAEAAKKKREERAAAIRKARDEAQRFAVLEGKALGEaDDK 102
                 58******************94444444555666677899*******************************************************8777 PP

      SART-1  98 edddakaWvkkskkrqkekkeaearakareldee...eeeekaaaaeytskdLaGlkVaHdlddfeegeeviLTLkDkgvlldee.eDeLeNvnlaeke 192
                  d dak+W++ +kkrqk    ++++   r+l+ee   +e+++aaa eytskdLaG+kVaHd+++f +g++++LTLkD++++++e+ +DeLeN++++e e
  CCE31172.1 103 GDVDAKSWLMGQKKRQK----KIDK--LRKLEEElaaAEAAAAAAVEYTSKDLAGIKVAHDTSQFLDGQDQVLTLKDTTIDENEDeGDELENLDMRETE 195
                 9****************....8988..556666677866888999************************************999967************ PP

      SART-1 193 klkknlelkkkkkkgYdpyeddedeekeksiLskYDeeidgkkkkksftLgdgsatsaeeree.keeikeklkkkklsLdlt..knaeasDylteeevk 288
                 kl ++l+lkkk + gY+p +d +dee+e ++L++YDeei+gkk  k+ftL dgs+t ae +++ +e  ++k+++ +++Ld+   ++  +sDyl ++ +k
  CCE31172.1 196 KLSERLDLKKKLH-GYNP-NDINDEEQEGGVLAQYDEEIYGKK-GKHFTL-DGSGTIAELADIlSE-PTKKANNANVNLDDIigDAPISSDYLAPSTIK 289
                 ***********66.****.67777789999*********8888.88****.9**********8455.555566678***665589999*********** PP

      SART-1 289 fKKpKkkkkkktRkkeeelkddddei....kaesdedemdvdeeakekekkrkaeeeveedsfvDDdeLqaaLakqRraalkkrkklrpedvakqlkee 383
                 +KKpKkkk+k tR+k+    dddd i    +a +d d+m+vd+++ + ++krk    +e d fvDDd+Lqa+La qR+ alkkrkk  p d+akqlkee
  CCE31172.1 290 VKKPKKKKSKGTRQKQY---DDDD-IfplePAPADGDAMEVDSNEVT-SRKRK----AESDIFVDDDDLQASLALQRKIALKKRKKIGPLDLAKQLKEE 379
                 **************988...6666.447998888899******8544.34444....34567************************************9 PP

      SART-1 384 reeeeeekeeeeegglvldetseFvrnlgeieekeeekanrekeeesve..eeeeeeeeeddeeededveealeeaeeeeeeeekeeeeesekeeskel 480
                   + e  +e++++ glv+ e+seFv+nl++++++e++k++r +++++ +  + e+   + +++ +ded ++         + + + ++ees    ++e+
  CCE31172.1 380 DDQAE--TESQDNTGLVIGEISEFVSNLSKRDDEEDRKQRRPRTQTRSPppA-ED---HPMEDVGDEDGDH---------SPQPHLKQEES-AAPHTEE 462
                 76664..456889******************999988887776655322221.11...1222222222111.........11222222233.3566778 PP

      SART-1 481 setgleeEptvskGlaaaLkllkqkglleete..eeekqrerqkflaekrrr....eekrreererdrksgkedkqsarerekyarrenrqreqqeare 573
                 + tg+eeE+tv++G++a+L+ll+++glle+t+  e e++r+r++fl +kr      +e++r++rerdr+sg++d+++ r+re+yar +n++r+qq++ +
  CCE31172.1 463 AYTGVEEEKTVGAGMGATLSLLRERGLLETTHgnEFENFRNREEFLMRKRLLeeelDEQTRQQRERDRASGRLDRMTVRDREEYARTQNQRRDQQQSLR 561
                 88999************************77664599*************999999999**************************************** PP

      SART-1 574 aaeffekdYkPdvklkYvDefGreLtqKEAFkqLSHkFHGkgsGkkKtEKrlkKieee 631
                 +a +f+ +YkP+v+lkY De+Gr+L+qKEAFk+LSH+FHGkgsGk KtEKrlk++++e
  CCE31172.1 562 MAALFSANYKPSVQLKYSDEHGRSLDQKEAFKHLSHQFHGKGSGKGKTEKRLKRVDDE 619
                 *****99************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1843  (0.102794); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 4288.87
//
Query:       CCE31173.1  [L=193]
Description: related to a-agglutinin core protein AGA1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-11   42.5   0.2    1.4e-10   41.3   0.2    1.6  1  Glu-tRNAGln  Glu-tRNAGln amidotransferase C subunit
  ------ inclusion threshold ------
      0.024   14.7   0.1       0.12   12.4   0.0    2.1  2  DUF3475      Domain of unknown function (DUF3475)
       0.22   11.7   2.7       0.31   11.2   2.7    1.2  1  ATG16        Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> Glu-tRNAGln  Glu-tRNAGln amidotransferase C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.2   2.3e-14   1.4e-10       3      62 .]      86     184 ..      85     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 2.3e-14
                  HHHHHHHHHHHHHHHHHHTTCGCS--TT----S........-EB-S--...............................HHHH..HTT-SSEETTEEE CS
  Glu-tRNAGln   3 eeEleklakelnsildyveqLqevdttgveplthp......vlReDev...............................reel..LknApetedgyfv 61 
                   +E++++ ++l+s+l++v ++q+vdt gvepl+++       +Re ++                               +e++  L  A+ ++++yfv
   CCE31173.1  86 SAEEASMIETLQSQLQFVRAVQRVDTAGVEPLRAIrdetleAVRENTItlegvksllseeehvghykrprrirkkieeaDEKWdvLGAASRKAGKYFV 183
                  589**********************99********8877775577754778899999999999********99998887444466************* PP

                  E CS
  Glu-tRNAGln  62 V 62 
                  V
   CCE31173.1 184 V 184
                  9 PP

>> DUF3475  Domain of unknown function (DUF3475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.3   1.8e+03      40      54 ..      65      79 ..      42      80 .. 0.71
   2 ?   12.4   0.0     2e-05      0.12      18      46 ..     118     146 ..     113     148 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.3
     DUF3475 40 kLvSkDedfLlrLal 54
                ++++k  ++LlrLa+
  CCE31173.1 65 TITPKQLHHLLRLAA 79
                456666778888886 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2e-05
     DUF3475  18 qsLsdkevarLreeilrseGVrkLvSkDe 46 
                 +++ d++++ +re+++ +eGV+ L S+ e
  CCE31173.1 118 RAIRDETLEAVRENTITLEGVKSLLSEEE 146
                 6778999*******************987 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.7   5.2e-05      0.31      32     153 ..      23     142 ..       3     146 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.2e-05
       ATG16  32 saleaenaklekaaasaks.....sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerl 125
                 ++l++ + +        ++     ++s +  + ++++s+s+ +++ s ++ +++q+ + lr     l +s +e a+++ +l+++lq  ++  + d++ +
  CCE31173.1  23 AHLSSTRTAS-------TAadilsKPSWSIRSLREPSSSSPAAESASRETITPKQLHHLLRLAALPLPQSSAEEASMIETLQSQLQFVRAVQRVDTAGV 114
                 2222222222.......112333223333344555555555566667777888999999999999999******************************* PP

       ATG16 126 aeleaeraaletklkdreeelrekeklv 153
                 + l+a r +  +++++++ +l++ + l+
  CCE31173.1 115 EPLRAIRDETLEAVRENTITLEGVKSLL 142
                 *****************99999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1436.70
//
Query:       CCE31174.1  [L=292]
Description: probable transport vesicle fusion protein SEC17 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.9e-109  363.3  18.6     1e-108  363.1  18.6    1.0  1  SNAP           Soluble NSF attachment protein, SNAP
    5.5e-07   29.8  11.4     0.0022   18.3   0.3    3.7  3  TPR_12         Tetratricopeptide repeat
    0.00056   19.8   6.5        9.8    6.5   0.1    5.3  5  TPR_7          Tetratricopeptide repeat
     0.0014   18.6  16.7       0.17   12.1   0.3    6.4  7  TPR_2          Tetratricopeptide repeat
     0.0016   18.5   0.2     0.0054   16.8   0.1    1.9  1  DUF2521        Protein of unknown function (DUF2521)
      0.004   17.7   9.4        8.7    7.2   0.0    5.7  6  TPR_6          Tetratricopeptide repeat
      0.005   16.6  10.4        1.5    8.7   0.1    5.6  6  TPR_1          Tetratricopeptide repeat
     0.0059   16.7   2.8        2.4    8.4   0.3    3.6  3  TPR_9          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   15.8   9.5        1.2   10.2   0.0    5.2  5  TPR_14         Tetratricopeptide repeat
      0.019   14.5   4.5       0.04   13.5   3.4    1.9  2  Foie-gras_1    Foie gras liver health family 1
       0.11   12.7  12.8       0.55   10.6   0.1    4.5  5  TPR_8          Tetratricopeptide repeat
        0.4   10.5   9.0       0.14   12.0   4.6    2.2  2  PhageMin_Tail  Phage-related minor tail protein
        5.4    8.2  17.6        5.9    8.1   0.2    6.5  5  NSF            Aromatic-di-Alanine (AdAR) repeat


Domain annotation for each model (and alignments):
>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.1  18.6  7.3e-112    1e-108       2     282 .]       4     285 ..       3     285 .. 0.99

  Alignments for each domain:
  == domain 1  score: 363.1 bits;  conditional E-value: 7.3e-112
                 -HHHHHHHHHHHSS---THHHHH--SHHHHHHHHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHHH.TT-HHHHHHHHHHHHHHHHHT-HHHHHHHHHH CS
        SNAP   2 kaeellakAekklksssglfslfgsksskaeeAadlyeqAAnayklakkweeAgeaflkaAecqek.lkekdeaanayveAakcykkvspeeAvealek 99 
                 ++++ll+kAek+l s+++ fs+fg++++k+++Aadl++qAAna+k++++  eAg+af++aA++q++ l+e d+aan++v+A+k+y+k+ p++Av++l+ 
  CCE31174.1   4 DPRALLQKAEKTLASAGSGFSFFGGREDKYQNAADLFTQAANAFKMQNQGVEAGKAFEQAAQVQTSkLNELDDAANSFVDAFKAYRKDAPSDAVRCLKV 102
                 7899************************************************************988******************************** PP

                 HHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-TTTGGGHHHH CS
        SNAP 100 AieiytekgrfrraAklkkeiaelyekelgdlekAieaYekAaelyeqeeakalankcllkvAelsaelekyekAieiyekvakkslennllkysvkey 198
                 A++ y+ kg+frraA++++++ae+ye++l+d+++A+e+Ye+Aa +ye+++a alank++lkvAe +a  ++y+kA+e +ekva++s++n+l+kysvk+y
  CCE31174.1 103 AVDRYCVKGNFRRAASHHETMAEVYETQLDDVNAALECYETAASWYEGDNAMALANKLWLKVAEAAAIAGDYHKAVENFEKVAEQSVQNQLMKYSVKDY 201
                 *************************************************************************************************** PP

                 HHHHHHHHHHTT-HHHHHHHHHGGG-----------HHHHHHHHHHHHTT-TTTHHHHHHHHTTSS---HHHHHHHHHHHHHHH CS
        SNAP 199 flkaglcrLaagDvvaakralekyeeldpsFassrEakllkdlleaveegdvekfteavkefDkiskldkWkttlLlkiKksie 282
                 +lkag+c+La+gD+va++raleky  ldpsFas+rE++ll+dl+ea+e++ ++ ft++++++D+i kld+Wktt+L+++K++ie
  CCE31174.1 202 LLKAGICHLASGDMVATRRALEKYVVLDPSFASQREYMLLSDLCEALEQQSQDVFTDKLFQYDQICKLDNWKTTILVRVKNTIE 285
                 **********************************************************************************96 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.4    0.0043       5.9       7      75 ..      41     107 ..      35     108 .. 0.75
   2 !    9.4   0.6   0.00092       1.3       3      39 ..     116     151 ..     114     158 .. 0.76
   3 !   18.3   0.3   1.6e-06    0.0022       5      60 ..     160     214 ..     155     226 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0043
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 ++ a++   + +  eA + +e+a +++++ l++  +++a++  +   +yr+   + +A++ l+ a++++
  CCE31174.1  41 TQAANAFKMQNQGVEAGKAFEQAAQVQTSKLNE-LDDAANSFVDAFKAYRKD-APSDAVRCLKVAVDRY 107
                 45677777788899*************777765.557899988888887544.8888888877777765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00092
      TPR_12   3 atalnn.laavl.rrlgrydeAlellekaleiarrllGp 39 
                 a+++++ +a+v+ ++l +   Ale++e+a   +    G+
  CCE31174.1 116 AASHHEtMAEVYeTQLDDVNAALECYETAASWY---EGD 151
                 45555449****888**************9988...444 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 1.6e-06
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralgr 60 
                 ++ ++a++ + +g+y++A e++ek+ e+  ++ l +++  +  +l   g++++a+g+
  CCE31174.1 160 LWLKVAEAAAIAGDYHKAVENFEKVAEQSvQNQLMKYS--VKDYLLKAGICHLASGD 214
                 56689************************9999**988..99************998 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.015        20      13      30 ..      31      49 ..      29      55 .. 0.77
   2 ?   -1.6   0.0       2.6   3.6e+03      11      21 ..      69      80 ..      59      86 .. 0.70
   3 ?    5.0   0.0     0.022        30      13      31 ..     111     129 ..     106     135 .. 0.66
   4 ?    2.9   0.1       0.1   1.4e+02       9      24 ..     127     143 ..     122     159 .. 0.70
   5 !    6.5   0.1    0.0071       9.8      13      30 ..     172     187 ..     165     193 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.015
       TPR_7 13 GdyeeAielyeqsL.altk 30
                 +y++A++l++q+  a+  
  CCE31174.1 31 DKYQNAADLFTQAAnAFKM 49
                68**********8777665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.6
       TPR_7 11 r.lGdyeeAiel 21
                + l++ ++A+  
  CCE31174.1 69 SkLNELDDAANS 80
                448888888865 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.022
       TPR_7  13 GdyeeAielyeqsLaltkd 31 
                 G++++A++++e + ++ + 
  CCE31174.1 111 GNFRRAASHHETMAEVYET 129
                 7778888888776655444 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.1
       TPR_7   9 ysr.lGdyeeAielyeq 24 
                 y+  l d   A+e+ye 
  CCE31174.1 127 YETqLDDVNAALECYET 143
                 55557777788888887 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.0071
       TPR_7  13 GdyeeAielyeqsLaltk 30 
                 Gdy +A+e +e+  + + 
  CCE31174.1 172 GDYHKAVENFEK--VAEQ 187
                 9**********9..5554 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2      0.11   1.6e+02      14      28 ..      30      44 ..      29      48 .. 0.86
   2 ?    4.0   0.8     0.046        64       4      29 ..      39      65 ..      36      67 .. 0.69
   3 ?    0.4   0.1      0.67   9.2e+02      13      32 ..      70      89 ..      69      91 .. 0.78
   4 ?   -2.2   0.0       4.5   6.2e+03      11      22 ..     107     118 ..     105     119 .. 0.70
   5 !    6.3   0.1    0.0084        12      13      32 ..     130     149 ..     124     151 .. 0.86
   6 !   12.1   0.3   0.00012      0.17       2      29 ..     159     186 ..     158     188 .. 0.90
   7 ?   -0.0   0.0      0.91   1.3e+03       4      32 ..     202     230 ..     200     232 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.11
       TPR_2 14 lgdyeeAleafekAl 28
                 ++y+ A+++f +A 
  CCE31174.1 30 EDKYQNAADLFTQAA 44
                579**********96 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.046
       TPR_2  4 lynlGlayyklgdy.eeAleafekAle 29
                l+ ++  ++k+++   eA +afe+A +
  CCE31174.1 39 LFTQAANAFKMQNQgVEAGKAFEQAAQ 65
                455555555555555**********87 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.67
       TPR_2 13 klgdyeeAleafekAleldP 32
                kl+++++A++ f  A + + 
  CCE31174.1 70 KLNELDDAANSFVDAFKAYR 89
                68899999999988877665 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 4.5
       TPR_2  11 yyklgdyeeAle 22 
                 y  +g++ +A+ 
  CCE31174.1 107 YCVKGNFRRAAS 118
                 556788888865 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.0084
       TPR_2  13 klgdyeeAleafekAleldP 32 
                 +l+d + Ale++e A + ++
  CCE31174.1 130 QLDDVNAALECYETAASWYE 149
                 688999*********88765 PP

  == domain 6  score: 12.1 bits;  conditional E-value: 0.00012
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                 +++   ++a++ +gdy +A+e fek+ e
  CCE31174.1 159 KLWLKVAEAAAIAGDYHKAVENFEKVAE 186
                 578999*******************987 PP

  == domain 7  score: -0.0 bits;  conditional E-value: 0.91
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldP 32 
                 l   G +++++gd    ++a+ek + ldP
  CCE31174.1 202 LLKAGICHLASGDMVATRRALEKYVVLDP 230
                 66678888888887666777777777777 PP

>> DUF2521  Protein of unknown function (DUF2521)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   3.9e-06    0.0054      32     116 ..      75     157 ..      60     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.9e-06
     DUF2521  32 kksvkehfksllpfaslaksiledgCidlaieayLlGaeygrfgyyGEsaeevkkRceeEekelveelfdlllswskeeealaee 116
                   ++ + f + ++++++ ++     C+ +a++ y + +++ r + + E+++ev +   +++++ +e  +++  sw++ ++a+a +
  CCE31174.1  75 D-DAANSFVDAFKAYRKDAPSDAVRCLKVAVDRYCVKGNFRRAASHHETMAEVYETQLDDVNAALE-CYETAASWYEGDNAMALA 157
                 3.4556677999999999999999******************************999999998775.6899999*9999887654 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1       1.3   1.8e+03      14      28 ..      31      45 ..       7      48 .. 0.74
   2 ?    0.5   0.2      0.87   1.2e+03       6      27 ..      43      64 ..      39      67 .. 0.78
   3 ?    1.7   0.0      0.36   4.9e+02       9      30 ..      87     107 ..      83     107 .. 0.84
   4 ?    1.9   0.1      0.31   4.3e+02       6      25 ..     123     143 ..     121     146 .. 0.86
   5 ?    6.4   0.1     0.012        16      13      28 ..     171     186 ..     150     188 .. 0.75
   6 !    7.2   0.0    0.0063       8.7       2      29 ..     201     228 ..     200     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.3
                HHHHHHHHHHHHHHH CS
       TPR_6 14 gdtdkAlealerlik 28
                +++++A +++ +  +
  CCE31174.1 31 DKYQNAADLFTQAAN 45
                578889999888766 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.87
                HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  6 lalsyrklgdtdkAlealerli 27
                +a +++++++  +A +a+e+  
  CCE31174.1 43 AANAFKMQNQGVEAGKAFEQAA 64
                5667777889999999999875 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.36
                 HHHHHHHHHHHHHHHHHHHHH- CS
       TPR_6   9 syrklgdtdkAlealerlikeY 30 
                 +yrk   +++A++ l+  +++Y
  CCE31174.1  87 AYRKD-APSDAVRCLKVAVDRY 107
                 56665.7889*********999 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.31
                 HHHHHHH.HHHHHHHHHHHHH CS
       TPR_6   6 lalsyrk.lgdtdkAlealer 25 
                 +a+ y+  l+d  +Ale +e 
  CCE31174.1 123 MAEVYETqLDDVNAALECYET 143
                 7999997589*********97 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHHHHH CS
       TPR_6  13 lgdtdkAlealerlik 28 
                 +gd+ kA+e +e++ +
  CCE31174.1 171 AGDYHKAVENFEKVAE 186
                 38***********987 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0063
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlike 29 
                  l+k++ ++++ gd  + ++ale+ +  
  CCE31174.1 201 YLLKAGICHLASGDMVATRRALEKYVVL 228
                 59*********77**********99865 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.48   6.7e+02      15      27 ..      31      43 ..      29      44 .. 0.89
   2 ?    3.4   0.3     0.055        76       3      29 ..      39      65 ..      37      67 .. 0.84
   3 ?   -1.3   0.1       1.7   2.3e+03      13      24 ..      70      81 ..      69      90 .. 0.64
   4 ?    5.7   0.1      0.01        14      13      27 ..     130     144 ..     128     146 .. 0.87
   5 !    8.7   0.1    0.0011       1.5       4      29 ..     161     186 ..     159     188 .. 0.81
   6 ?   -0.3   0.0      0.79   1.1e+03       8      34 .]     206     232 ..     202     232 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.48
                T-HHHHHHHHHHH CS
       TPR_1 15 gkydeAleyyekA 27
                 ky+ A + + +A
  CCE31174.1 31 DKYQNAADLFTQA 43
                59********998 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.055
                HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1  3 alynlGnayfklgkydeAleyyekALe 29
                 + + +na+  +++  eA +++e+A +
  CCE31174.1 39 LFTQAANAFKMQNQGVEAGKAFEQAAQ 65
                566669*******************77 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.7
                HTT-HHHHHHHH CS
       TPR_1 13 klgkydeAleyy 24
                kl+++d+A   +
  CCE31174.1 70 KLNELDDAANSF 81
                677777776655 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.01
                 HTT-HHHHHHHHHHH CS
       TPR_1  13 klgkydeAleyyekA 27 
                 +l + + Ale+ye A
  CCE31174.1 130 QLDDVNAALECYETA 144
                 678899*******98 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALe 29 
                 +   + a    g+y +A+e +ek+ e
  CCE31174.1 161 WLKVAEAAAIAGDYHKAVENFEKVAE 186
                 55567778889************865 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.79
                 HHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPnn 34 
                 G +++  g+      + ek + l+P++
  CCE31174.1 206 GICHLASGDMVATRRALEKYVVLDPSF 232
                 788999999988888999999999976 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.3   7.3e+03      40      56 ..      88     104 ..      84     107 .. 0.68
   2 !    8.4   0.3    0.0017       2.4       7      59 ..     130     188 ..     125     195 .. 0.78
   3 ?    5.3   0.0     0.016        22      35      61 ..     205     231 ..     201     243 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.3
       TPR_9  40 aqlGclsaAladLeayl 56 
                 ++ +++s A+++L  ++
  CCE31174.1  88 YRKDAPSDAVRCLKVAV 104
                 56677788888876555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0017
       TPR_9   7 reedweralavverllll......aPddpeerrdRGlllaqlGclsaAladLeaylala 59 
                 + +d  +al+++e    +         +  +++  + + a  G++++A++ +e  ++++
  CCE31174.1 130 QLDDVNAALECYETAASWyegdnaMALANKLWLKVAEAAAIAGDYHKAVENFEKVAEQS 188
                 66788888888888888876655433344689999999999*********999998876 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.016
       TPR_9  35 RGlllaqlGclsaAladLeaylalapd 61 
                  G+++  +G++ a +++Le y+ l+p+
  CCE31174.1 205 AGICHLASGDMVATRRALEKYVVLDPS 231
                 69999999**************99993 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       2.6   3.6e+03       6      29 ..      42      65 ..      34      78 .. 0.68
   2 ?    1.9   0.2       0.4   5.5e+02      13      35 ..      70      92 ..      58     104 .. 0.67
   3 ?    1.7   0.1      0.43     6e+02       7      28 ..     123     145 ..     111     157 .. 0.74
   4 ?   10.2   0.0   0.00086       1.2       3      34 ..     160     191 ..     158     196 .. 0.89
   5 ?    3.8   0.1     0.093   1.3e+02       4      35 ..     202     233 ..     199     253 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.6
      TPR_14  6 alaeallalGdpdeAiallrrala 29
                ++a a+  + +  eA +++++a +
  CCE31174.1 42 QAANAFKMQNQGVEAGKAFEQAAQ 65
                556666666666677777777654 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.4
      TPR_14 13 alGdpdeAiallrralalaPdda 35
                 l ++d+A++ + +a +++ +da
  CCE31174.1 70 KLNELDDAANSFVDAFKAYRKDA 92
                57788888888888887665443 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.43
      TPR_14   7 laeall.alGdpdeAiallrral 28 
                 +ae+++ +l+d  +A+++++ a 
  CCE31174.1 123 MAEVYEtQLDDVNAALECYETAA 145
                 67777535788888888888775 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00086
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdd 34 
                 ++l+ aea + +Gd+ +A++ ++++ ++  ++
  CCE31174.1 160 LWLKVAEAAAIAGDYHKAVENFEKVAEQSVQN 191
                 8***********************99987766 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.093
      TPR_14   4 llalaeallalGdpdeAiallrralalaPdda 35 
                 ll+++  +la+Gd  + +++l++++ l+P++a
  CCE31174.1 202 LLKAGICHLASGDMVATRRALEKYVVLDPSFA 233
                 57778889999**99**************876 PP

>> Foie-gras_1  Foie gras liver health family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.4   2.9e-05      0.04     128     216 ..      91     184 ..      22     192 .. 0.67
   2 ?    0.3   0.0      0.31   4.3e+02      85     144 ..     189     266 ..     180     287 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.9e-05
  Foie-gras_1 128 qspassiassayvydty......lapepheeyplsgseekgvahskliidlLekaleeFskrkqtRlaeelsleiAeeylrlgdwkkalellqpl 216
                  ++p+ ++     + d y      +    h e++++   e++ ++ + +++++e+a   ++  ++  la++l l++Ae+   +gd+ ka+e ++ +
   CCE31174.1  91 DAPSDAVRCLKVAVDRYcvkgnfRRAASHHETMAEVY-ETQLDDVNAALECYETAASWYEGDNAMALANKLWLKVAEAAAIAGDYHKAVENFEKV 184
                  3333333333334444466666777777777777776.8**************************************************999877 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.31
  Foie-gras_1  85 tqqstleeqpwellhhagyyyqlaakhakerrelaeqiandpe..................qspassiassayvydty 144
                   q++ ++ +  + l +ag+    + + + +rr+l++ ++ dp+                  q+++   + +++ yd++
   CCE31174.1 189 VQNQLMKYSVKDYLLKAGICHLASGDMVATRRALEKYVVLDPSfasqreymllsdlcealeQQSQDVFTDKLFQYDQI 266
                  344445555888999999999999999999999999999888776666667777777666666666666677777766 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       9.7   1.3e+04      16      27 ..      32      43 ..      30      46 .. 0.72
   2 ?   -0.4   0.2       1.3   1.8e+03      12      33 ..      69      90 ..      57      91 .. 0.70
   3 ?    8.1   0.1    0.0025       3.5       8      31 ..     124     148 ..     121     151 .. 0.86
   4 ?   10.6   0.1    0.0004      0.55       3      29 ..     160     186 ..     159     188 .. 0.89
   5 ?   -2.4   0.0         6   8.3e+03       8      32 ..     206     230 ..     200     231 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9.7
                -HHHHHHHHHHH CS
       TPR_8 16 dyeeAkeyyeka 27
                +y++A   + +a
  CCE31174.1 32 KYQNAADLFTQA 43
                677887777776 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.3
                HHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8 12 lklgdyeeAkeyyekaleldpd 33
                +kl++++ A  ++  a ++ ++
  CCE31174.1 69 SKLNELDDAANSFVDAFKAYRK 90
                6888888888888888777665 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0025
                 HHHH.HHTT-HHHHHHHHHHHHHHH CS
       TPR_8   8 gsiy.lklgdyeeAkeyyekaleld 31 
                 + +y  +l d ++A e+ye a ++ 
  CCE31174.1 124 AEVYeTQLDDVNAALECYETAASWY 148
                 6677789**************9986 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.0004
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 ++++ + +    gdy++A+e +ek+ e
  CCE31174.1 160 LWLKVAEAAAIAGDYHKAVENFEKVAE 186
                 789999999999************876 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 6
                 HHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldp 32 
                 g ++l  gd+ +   ++ek++ ldp
  CCE31174.1 206 GICHLASGDMVATRRALEKYVVLDP 230
                 4555666666555567777776666 PP

>> PhageMin_Tail  Phage-related minor tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.6    0.0001      0.14      52     100 ..      31      81 ..      15      92 .. 0.84
   2 ?   -0.3   0.1      0.58     8e+02     104     143 ..     154     194 ..     124     224 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
  PhageMin_Tail  52 ddleeaaeilstalnafglsaa..daeeaaDvlaaaanngatsvedlaeal 100
                    d+ + aa+ +++a+naf+++++  +a++a+ + a+++ +  ++++d a+++
     CCE31174.1  31 DKYQNAADLFTQAANAFKMQNQgvEAGKAFEQAAQVQTSKLNELDDAANSF 81 
                    44899***************6679999999999999999888888887665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.58
  PhageMin_Tail 104 gavakaaGlsfeetaaalallaaag.ikgseAgtalknlls 143
                    +a a+++ l+ +e+aa+++   +a       A ++++n l+
     CCE31174.1 154 MALANKLWLKVAEAAAIAGDYHKAVeNFEKVAEQSVQNQLM 194
                    44445555555555555555555331333344445555555 PP

>> NSF  Aromatic-di-Alanine (AdAR) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2    0.0043       5.9       1      12 []      36      47 ..      36      47 .. 0.96
   2 ?    5.1   0.1     0.042        59       1      10 [.      56      65 ..      56      66 .. 0.89
   3 ?   -0.7   0.0         4   5.5e+03       1       7 [.      77      83 ..      74      88 .. 0.58
   4 ?    0.1   0.1       2.1   2.8e+03       1      12 []     116     127 ..     116     127 .. 0.78
   5 ?    1.6   0.3      0.65     9e+02       3       9 ..     139     145 ..     137     148 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0043
         NSF  1 AakhyekAaeiy 12
                Aa+++++Aa+++
  CCE31174.1 36 AADLFTQAANAF 47
                9*********98 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.042
         NSF  1 AakhyekAae 10
                A+k++e+Aa 
  CCE31174.1 56 AGKAFEQAAQ 65
                89******96 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 4
         NSF  1 Aakhyek 7 
                Aa+ + +
  CCE31174.1 77 AANSFVD 83
                4555555 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 2.1
         NSF   1 AakhyekAaeiy 12 
                 Aa+h+e  ae+y
  CCE31174.1 116 AASHHETMAEVY 127
                 99***9766665 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.65
         NSF   3 khyekAa 9  
                 ++ye Aa
  CCE31174.1 139 ECYETAA 145
                 7*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2027.76
//
Query:       CCE31175.1  [L=1272]
Description: related to SEC31 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-10   40.2   0.0    2.7e-10   40.2   0.0    3.7  4  SRA1      Steroid receptor RNA activator (SRA1)
    1.1e-09   38.4   0.1    1.8e-08   34.4   0.0    2.7  2  Sec16_C   Sec23-binding domain of Sec16
    8.4e-07   29.6   2.4      0.094   13.6   0.0    6.0  6  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> SRA1  Steroid receptor RNA activator (SRA1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   3.0       2.4   1.4e+04       9      19 ..     899     917 ..     891     932 .. 0.43
   2 ?   -9.2   7.9         3   1.8e+04       4      22 ..     996    1014 ..     977    1025 .. 0.70
   3 ?   -8.0   8.5         3   1.8e+04       3      17 ..    1066    1080 ..    1048    1105 .. 0.76
   4 !   40.2   0.0   4.4e-14   2.7e-10       8     131 ..    1139    1267 ..    1127    1271 .. 0.69

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 2.4
        SRA1   9 aapp........pPsveav 19 
                  +p+        pP+++a 
  CCE31175.1 899 GPPRsssstpsaPPPSKAK 917
                 3333222111234443333 PP

  == domain 2  score: -9.2 bits;  conditional E-value: 3
        SRA1    4 pPssvaapppPsveavkls 22  
                  +P+ +  pppP+ +++ ++
  CCE31175.1  996 SPPQAGLPPPPRPSSTMAN 1014
                  4555566777766555544 PP

  == domain 3  score: -8.0 bits;  conditional E-value: 3
        SRA1    3 ppPssvaapppPsve 17  
                  +pP+++ +pppP++ 
  CCE31175.1 1066 APPAASMPPPPPPSA 1080
                  456666666666543 PP

  == domain 4  score: 40.2 bits;  conditional E-value: 4.4e-14
        SRA1    8 vaapppPsveavk.lsskeekslsesesepeledvlsvLnqaLea....CrksvkkqvcddvekrLrlledsWksGkLslpvr.krmevLsqelqsk 98  
                   a+pppP+  a++ +++ ++ +  +s+  ++ ++++ vL q ++        +   qv +d +krL ll d+ ++  L  p    +++ L+  +q+k
  CCE31175.1 1139 HATPPPPPKAAAPpQKAAKHPAGDRSHIPANAQHLVDVLSQDMQRiaskAPAAFAPQV-KDTQKRLGLLFDHLNNEELVQPATiDQLSQLADAIQNK 1234
                  4455555544443033333333334444445555555555555440000444455555.7889***************999763689********** PP

        SRA1   99 rWdaaDdihrsLmvDhvtevsqWmvGvkrLiae 131 
                   + +a ++   +  D   e   WmvGvkrLi+ 
  CCE31175.1 1235 DYASAQKLQVDIQRDKTEECGNWMVGVKRLISM 1267
                  *******************************75 PP

>> Sec16_C  Sec23-binding domain of Sec16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0     3e-12   1.8e-08       1     235 [.     550     768 ..     550     778 .. 0.77
   2 ?   -1.8   0.0      0.31   1.9e+03     246     292 ..    1213    1259 ..    1209    1265 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3e-12
                 HHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHH---.---THHHHHHHHHHTTT-HHHHHHHHHH...........-HHHHHHHH CS
     Sec16_C   1 iqalLlrGdrekAlqlAldkklWahAlliasllgkelwkevvqefvrselkegensesLrvlyqvfaGnseeavdelvptsaraslqqaeeskeaeeal 99 
                 i + L+ Gd  kA +++l+++  a A+lia + g+el  +v + +++++ +     + +r+l +v++ n  ++    ++                   l
  CCE31175.1 550 ITKALMLGDFAKATDICLKEERIADAFLIATCGGQELIDKVQTAYLSKKNG---MPSYMRLLGSVISKNLWDV---VYN-----------------ADL 625
                 6789********************************************997...4599********9997733...344.................679 PP

                 HSHHHHHHHHHHTS--HH.HHHHHHHHHHHHHTT-HHHHHHHHHHT..-SSS...............BSSTTS--B--SSSTTSHHHHH.HHHHHHHHH CS
     Sec16_C 100 dkWretvalvlsnrspsd.seaLtalGdlLaskgrveaahicylla..lsqt..slfggldspsarlvllgadhvkfessfakdlesil.ltEiyEfal 192
                 ++W+et+a+++    p++      alGd +  +g  + a++cyl+   l++    +  +l++ +++    g+   +f+ + +k+l+s++    i+  ++
  CCE31175.1 626 ESWKETMAIICTFSDPKEfPDLCEALGDRIQDNGSRKDASFCYLVGskLEKVvdIWAAELEEVEKEGLKAGTGGSAFSVH-VKSLQSFIeKVTIFRHVT 723
                 ******************8888899*********************4422221123333333333334444444433333.455555441445666666 PP

                 .HT......TT----CCCHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
     Sec16_C 193 slspaak..ekfaglphLlayKllhAavLaelGlvseAqkYcdai 235
                 + +  +k  ++   l+ L      +A +La +G++++Aq Y + +
  CCE31175.1 724 KFQDGEKgqTSDWKLATLYDKYTEYADILAGHGQLDAAQTYLELL 768
                 66666666555678999999999******************9977 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.31
                  SHHHHH.HHHHHHHHHHHT-XXX.....XXX..XXXXXXXXXXXXXX CS
     Sec16_C  246 spylhptlleqlkdLserLseapkedksssWlkiskpsldkvwgsle 292 
                  ++ ++p+ ++ql++L + +++   +++++  + i++ + ++ ++++ 
  CCE31175.1 1213 EELVQPATIDQLSQLADAIQNKDYASAQKLQVDIQRDKTEECGNWMV 1259
                  6778999999*********9999766544444999999999888875 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.38   2.3e+03      25      38 .]      87     101 ..      61     101 .. 0.72
   2 ?    2.6   0.0     0.047   2.8e+02      10      38 .]     120     150 ..     113     150 .. 0.77
   3 ?    4.7   0.1     0.011        64      12      38 .]     169     196 ..     157     196 .. 0.76
   4 ?    1.5   0.0      0.11   6.5e+02      10      29 ..     209     230 ..     201     242 .. 0.66
   5 !   13.6   0.0   1.6e-05     0.094       3      38 .]     249     286 ..     247     286 .. 0.89
   6 ?   -1.5   0.0      0.93   5.5e+03      18      34 ..     308     325 ..     301     327 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.38
                 EEEEE.TTSEEEEEE CS
        WD40  25 lasGs.dDgtvriWd 38 
                 +++G  ++g++ +Wd
  CCE31175.1  87 VIAGAlENGSLELWD 101
                 5668657*******9 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.047
                 S.SSEEEEEEETTSSEEE..EEETTSEEEEEE CS
        WD40  10 H.ssvtslafspdgawla..sGsdDgtvriWd 38 
                 H + + +l+f+p ++ ++  +Gs +g ++++d
  CCE31175.1 120 HtGAIKALQFNPLKPHILatAGS-KGELYVFD 150
                 64559***********7533567.*9999987 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.011
                 SEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  12 svtslafspdgaw.lasGsdDgtvriWd 38 
                 ++ +la+++  +  la+G+  g v +Wd
  CCE31175.1 169 DIECLAWNRKVSHiLATGGSGGFVTVWD 196
                 49999655555555689977*******9 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.11
                 S.SSEEEEEEETTSSE.EEEEE CS
        WD40  10 H.ssvtslafspdgaw.lasGs 29 
                   + v+++a++p+++  l++++
  CCE31175.1 209 NrKAVSAIAWDPNNSTkLLTAT 230
                 445699********99755663 PP

  == domain 5  score: 13.6 bits;  conditional E-value: 1.6e-05
                 EEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 
                 + rtl GH ++v sl+   +d+++l+s+++D+   +W+
  CCE31175.1 249 PERTLQGHeQGVLSLSwCYQDSDLLLSSGKDNRTLVWN 286
                 6799****999****88888888899999********8 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 0.93
                 EETTSSEE.EEEETTSEE CS
        WD40  18 fspdgawl.asGsdDgtv 34 
                 f+p+++ l a++s Dg++
  CCE31175.1 308 FNPHNPNLsATASFDGKI 325
                 78888888347788*998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.51
# Mc/sec: 7453.82
//
Query:       CCE31176.1  [L=155]
Description: related to cyclophilin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-17   63.3   0.0    1.9e-17   62.8   0.0    1.2  1  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
    7.3e-05   22.8   0.0     0.0001   22.4   0.0    1.2  1  RRM_7        RNA recognition motif
     0.0024   17.8   0.0     0.0045   17.0   0.0    1.5  1  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   3.3e-21   1.9e-17       1      68 [.      12      83 ..      12      85 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 3.3e-21
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE....TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrd....etgkskgfafVeFeskedAekAlealngkklggre 68
                +fVg+L++ vt   L++ F +fG+i++++l++     +t++++gfa+VeFe+++dA +A+++++  ++ g+ 
  CCE31176.1 12 VFVGGLSQGVTSTHLYDAFLPFGEIVEVQLPKPdarkSTDSHRGFAYVEFEDPDDALEAIDNMHQSEFFGKI 83
                8******************************988999******************************99986 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.7e-08    0.0001       3      72 ..      11      76 ..       9      94 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.7e-08
       RRM_7  3 kvFvGGlPiDiteeelkatfkefgkv.lvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLleacte 72
                 vFvGGl   +t ++l+++f  fg++  v+ Pk    k++      +++g++++ fed +   + +++ ++
  CCE31176.1 11 TVFVGGLSQGVTSTHLYDAFLPFGEIvEVQLPKPDARKST-----DSHRGFAYVEFEDPDDALEAIDNMHQ 76
                59**********************9626999987555444.....3568*******997766666666555 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.5e-07    0.0045      21      52 ..      30      70 ..      10      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.5e-07
  Nup35_RRM_2 21 FasfGeIvkhyvp.........kevsvmyvkfesekdaekA 52
                 F  fGeIv+   p         + + ++yv+fe+++da  A
   CCE31176.1 30 FLPFGEIVEVQLPkpdarkstdSHRGFAYVEFEDPDDALEA 70
                 667*****************99999*************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1235.19
//
Query:       CCE31177.1  [L=85]
Description: uncharacterized protein CPUR_05028 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00097   18.9   0.1     0.0015   18.3   0.1    1.3  1  B12D      NADH-ubiquinone reductase complex 1 MLRQ subunit


Domain annotation for each model (and alignments):
>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   8.2e-08    0.0015       3      29 ..      42      68 ..      40      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.2e-08
        B12D  3 peliPLfvfigagvggavfylvRlllt 29
                 eliPL v++g++++   ++++R l  
  CCE31177.1 42 AELIPLAVAVGFALFAGGYSCYRKLAV 68
                69*********************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 689.26
//
Query:       CCE31178.1  [L=88]
Description: probable COX12-cytochrome-c oxidase, subunit VIB [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-19   70.1   5.1    1.7e-19   69.8   5.1    1.1  1  COX6B     Cytochrome oxidase c subunit VIb
  ------ inclusion threshold ------
      0.011   15.8   1.8      0.019   15.0   1.8    1.3  1  CX9C      CHCH-CHCH-like Cx9C, IMS import disulfide relay-sys
      0.034   14.1   0.3      0.051   13.5   0.3    1.3  1  APOBEC_C  APOBEC-like C-terminal domain


Domain annotation for each model (and alignments):
>> COX6B  Cytochrome oxidase c subunit VIb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   5.1   2.8e-23   1.7e-19       1      65 [.      22      77 ..      22      83 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 2.8e-23
       COX6B  1 araPnknqrkaCwearddyfkCldkkgeekaekkeeqdekkCkaekkeyesnCaksWveyfkekr 65
                ar+Pn+nq+k+Cw+++ dy+kC+++kge         d ++C ++++ y+s+C++sW ++++++r
  CCE31178.1 22 ARFPNTNQTKHCWQNYVDYHKCINAKGE---------DFAPCLQFYHAYRSLCPSSWHTRWDDQR 77
                69**************************.........***************************6 PP

>> CX9C  CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   1.8   3.1e-06     0.019       6      31 ..      31      56 ..      29      57 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.1e-06
        CX9C  6 kyCpkefeaYhkCvssnqswpekCke 31
                k+C +  + YhkC+ ++ ++ + C +
  CCE31178.1 31 KHCWQNYVDYHKCINAKGEDFAPCLQ 56
                9****************999999976 PP

>> APOBEC_C  APOBEC-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   8.6e-06     0.051      43      66 ..      31      60 ..      25      67 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.6e-06
                HHHHHHHBTT......TT-S----TTHHHH CS
    APOBEC_C 43 ehcWenFVdn......egepfkpwekleen 66
                +hcW+n+Vd+      +ge f p  ++ + 
  CCE31178.1 31 KHCWQNYVDYhkcinaKGEDFAPCLQFYHA 60
                8********977887777788876665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 658.86
//
Query:       CCE31179.1  [L=275]
Description: uncharacterized protein CPUR_05030 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-68  227.5   0.9    1.3e-67  226.8   0.9    1.3  1  Sde2_N_Ubi     Silencing defective 2 N-terminal ubiquitin dom
  ------ inclusion threshold ------
          2    6.4   8.2        2.2    6.3   8.2    1.1  1  Hid1           High-temperature-induced dauer-formation prote


Domain annotation for each model (and alignments):
>> Sde2_N_Ubi  Silencing defective 2 N-terminal ubiquitin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.8   0.9   1.4e-71   1.3e-67       1     164 []       6     167 ..       6     167 .. 0.98

  Alignments for each domain:
  == domain 1  score: 226.8 bits;  conditional E-value: 1.4e-71
  Sde2_N_Ubi   1 invlvssfdgltlpstlsltlpstatvsdlvdklserlpeslkesliLttvsnkqlllssdvslssllassadsellslrllvrlrGGKGGFGSqLRaa 99 
                 +nvl+++f gl+lp+tl +++ +++tvs+l +++  rlp s  ++li+tt+sn+ql+ +s++++s++l+ss+d e+lslrl+v+l+GGKGGFGSqLRaa
  CCE31179.1   6 VNVLITTFGGLSLPPTLVVPTSEDTTVSQLREEIVGRLPVSD-HRLIITTLSNRQLPEASEAPISTYLSSSQD-EFLSLRLAVPLCGGKGGFGSQLRAA 102
                 69***************************************5.55****************************.************************* PP

  Sde2_N_Ubi 100 ggrmsskkksnenndscRdldGrRLrtvkeakalaeylaekperekkekearrkrleavveaaek 164
                 ggrmss+kk++en++s+R+ldGrRLrtv+eakalaeyl++kp++ekkeke+rrkrle++v+++e+
  CCE31179.1 103 GGRMSSRKKNQENHGSSRNLDGRRLRTVNEAKALAEYLETKPDMEKKEKEKRRKRLEQIVQTSEE 167
                 *************************************************************9985 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.2   0.00025       2.2     588     707 ..     116     267 ..      47     273 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00025
        Hid1 588 e.........................sarldsideeeeenssessrieesrsesrspslsevpelksslaitddeskaereksatessssqavs..... 656
                 +                         ++  ++++e+e+++++ ++ +++s++ + +++     +l+ +  + ++es++      +e+ +s +++     
  CCE31179.1 116 HgssrnldgrrlrtvneakalaeyleTKPDMEKKEKEKRRKRLEQIVQTSEERQAQMKNGGTGRLDGKWVEDKEESSERT----REAVASVMMTgkysd 210
                 34444455555555555555555554445555555556666666666665555555555555566555544444333332....222222222234455 PP

        Hid1 657 ......qlremsekarakesaesteesrqesatskkspsgmsqsaeekftptsewle 707
                       + ++ se+a++++s e+++++ +e a s+k++ +++++a   f +++e++ 
  CCE31179.1 211 nlfgtsHGSTSSEQAEEQSSSENESSASTEDAASSKGKGKTVSKAFFGFDEDEEFMS 267
                 777765556666666677777777777777777777777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1872  (0.104412); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2024.43
//
Query:       CCE31180.1  [L=165]
Description: probable 40s ribosomal protein s10-b [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-42  143.4   0.2      2e-42  143.2   0.2    1.1  1  S10_plectin  Plectin/S10 domain


Domain annotation for each model (and alignments):
>> S10_plectin  Plectin/S10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.2   1.1e-46     2e-42       1      92 [.       3      94 ..       3      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 1.1e-46
                 --HCHHHHHHHHCCCCSCEEEE--SS----SSS---HHHHHHHHHHCCCCTSEEEEEETTEEEEEE-HHHHHHHHHHHXXXXSXHHHHHXXX CS
  S10_plectin  1 ipkknrkaiyeylfkegvlvakkdfelkkheelnvpnlqvikalqSLksrgyvkeqfaWrhyYytLtneGieylreylhlpeeivPatlkks 92
                 +pk++rk+iyeylf+egvlva+k+++l+kh+e++ +nl vika+qSL+srgyvk+qf+W++yYytLt eG++ylre+lhlp+eivPat+ ks
   CCE31180.1  3 MPKEDRKKIYEYLFREGVLVAEKNYNLPKHPEVGTKNLFVIKACQSLNSRGYVKTQFSWQYYYYTLTTEGLDYLREWLHLPAEIVPATYIKS 94
                 89**************************************************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1213.29
//
Query:       CCE31181.1  [L=96]
Description: uncharacterized protein CPUR_05032 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 766.96
//
Query:       CCE31182.1  [L=321]
Description: probable L-arabinitol 4-dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-15   56.6   0.0    3.8e-15   56.0   0.0    1.3  1  ADH_zinc_N       Zinc-binding dehydrogenase
    1.7e-13   50.4   0.8    4.8e-13   48.9   0.3    1.9  2  ADH_N            Alcohol dehydrogenase GroES-like domain
    6.1e-12   45.5   0.0    8.7e-12   45.0   0.0    1.2  1  Glu_dehyd_C      Glucose dehydrogenase C-terminus
    1.3e-08   35.9   0.0    2.5e-08   35.1   0.0    1.4  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
    0.00037   20.7   0.0    0.00062   20.0   0.0    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0018   17.6   0.1     0.0029   16.9   0.1    1.2  1  FAD_binding_3    FAD binding domain
  ------ inclusion threshold ------
      0.024   13.3   0.0      0.031   12.9   0.0    1.3  1  Staph_opine_DH   Staphylopine dehydrogenase
      0.045   14.3   0.0       0.23   12.0   0.0    2.1  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      0.058   12.6   0.1       0.41    9.8   0.0    2.1  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      0.079   13.2   0.1       0.18   12.1   0.1    1.5  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   2.1e-18   3.8e-15       1     116 [.     150     271 ..     150     283 .. 0.86

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 2.1e-18
                 HHHHHHHHHHH.HTT-EEEEEESSHHHHHHHHHTT.ESEEEETTTCHHHHHHHHHT..TTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC..TSS CS
  ADH_zinc_N   1 gvGlaavqlAk.alGaeviavdsseeklelakklG.adevinykeadlverikelt..ggegvdvvfecvGsgatleaalkllkpgGrlvvvGg..gkg 93 
                 + Gl++ ql++   G++v+ ++++  k +lak l  ad +i  ++++++++ ++l   ++ g+d+v+e++Gs + le+a++++++gG+lvv+G+  +  
  CCE31182.1 150 PTGLMLAQLLRqNGGCQVTIAAPKGLKMDLAKNLDaADTYIELSRDNPEAQFEQLKkdNPYGFDIVVEATGSVKILEDAINYVRRGGTLVVYGVyaSAA 248
                 57*********88888*******************89999999665899999999844488*********************************85555 PP

                 EEEEEHHHHHHTT-EEEEE-SSC CS
  ADH_zinc_N  94 eeefdlrnlllkeksilGsllgs 116
                 +   ++++++  e++i+Gs+  +
  CCE31182.1 249 KVAWPPAKIFGDEITIIGSFSET 271
                 55599999***********9876 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.3   2.7e-16   4.8e-13      48     108 ..      50     110 ..      46     111 .. 0.96
   2 ?   -1.8   0.0       1.6   2.8e+03      37      63 ..     216     242 ..     202     249 .. 0.76

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2.7e-16
                 TT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEEEECGGGEEE CS
       ADH_N  48 pevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfaeyvvvpekklvk 108
                 ++v+++kvGd+V+++    c+eC +C++ge  lCe+ + +gv+++Ggfaey+  p++k++k
  CCE31182.1  50 ENVTQFKVGDKVAADNSELCNECFYCRRGELLLCENFNAHGVTMNGGFAEYCAYPAAKVFK 110
                 789****************************************************999987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.6
                 -EEEEEEEEESTT-CS--TT-EEEE-S CS
       ADH_N  37 HEivGeveevgpevkklkvGdrVvvep 63 
                  E++G v+ ++++++ ++ G   vv+ 
  CCE31182.1 216 VEATGSVKILEDAINYVRRGGTLVVYG 242
                 689999999999999988887777764 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   4.8e-15   8.7e-12       6     211 ..     121     319 ..     118     320 .. 0.77

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 4.8e-15
  Glu_dehyd_C   6 LvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGa..tYvd.sretpvdeipeasee 100
                  L+EP s +  ++e+++          + +l+ GaG+ GL+ + ll++ + g + v++ +    +++++dl ++l+a  tY++ sr +p  ++ + +++
   CCE31182.1 121 LLEPASCACHGLEKIRPKL------GSHVLMFGAGPTGLMLAQLLRQ-NGGCQ-VTIAA---PKGLKMDLAKNLDAadTYIElSRDNPEAQFEQLKKD 207
                  5666666666666554322......24689*********99888874.56665.65544...6799********99779*974455555555444332 PP

  Glu_dehyd_C 101 ....mdlvvEaTGsakhafeaiealapnGvaaLlGvpeds.evevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdld 193
                      +d+vvEaTGs k + +ai+ ++  G  +  Gv+++  +v+    ++  +       ++Gs  +++  f a++d L++ + + ++ +v k  +l+
   CCE31182.1 208 npygFDIVVEATGSVKILEDAINYVRRGGTLVVYGVYASAaKVAWPPAKIFGD----EITIIGSF-SETYMFPATIDYLDSGKVR-TKGIVNKTFKLE 299
                  22339********************************9975777777777666....779****7.88999********987655.799********* PP

  Glu_dehyd_C 194 eleeAfe..dddetiKtvve 211
                  ++ +A e  +d+  iK+++ 
   CCE31182.1 300 DFGKALEsiKDKSAIKAAIV 319
                  ******95567789999985 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.4e-11   2.5e-08       8     127 ..     195     313 ..     183     314 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.4e-11
                   ETTSTTHH..HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH CS
  ADH_zinc_N_2   8 dyrtedfe..aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGk 101
                   d+ + +fe  ++ ++ g+D+v++++g+ ++le+++++++ gG+lv++g     +a++++p++k  g  +++   fs +++    ++ +  +++++Gk
    CCE31182.1 195 DNPEAQFEqlKKDNPYGFDIVVEATGSVKILEDAINYVRRGGTLVVYGvY-ASAAKVAWPPAKIFGDEITIIGSFS-ETY----MFPATIDYLDSGK 285
                   666889999988899***********************777****99954.4555666666669999999999995.444....599********** PP

                   ---..-EEEEEEGGGHHHHHHHHHSS-- CS
  ADH_zinc_N_2 102 lrp..vvdrvfpleeaaeAhrylesgra 127
                   +r+   v+++f+le+  +A++ ++ ++a
    CCE31182.1 286 VRTkgIVNKTFKLEDFGKALESIKDKSA 313
                   985337***************9987765 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.5e-07   0.00062       1     101 [.     143     244 ..     143     256 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.5e-07
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS....SEEEE-SSGG.GHHHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg....dlvvnlsppi.ssldvlkaC 89 
                      vl++GaG +G  +a+ll +++    ++t+a ++  k++ ++   l    + i+l ++n+ea  ++l k++    d+vv +++++   +d + + 
       CCE31182.1 143 VLMFGAGPTGLMLAQLLRQNGGC--QVTIAAPKGLKMDLAK--NLDAADTYIELSRDNPEAQFEQLKKDNpygfDIVVEATGSVkILEDAINYV 232
                      89********************9..***********76665..478888899*********9999999989***********996666899999 PP

                      HHHT-EEEESS- CS
  Sacchrp_dh_NADP  90 ietgvhyvdtsi 101
                      ++ g+++v  ++
       CCE31182.1 233 RRGGTLVVYGVY 244
                      999988886555 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.6e-06    0.0029       3      24 ..     142     163 ..     141     173 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.6e-06
                    EEEEE--SHHHHHHHHHHHHTT CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaG 24 
                     Vl  GaGp+Glmla+lL++ G
     CCE31182.1 142 HVLMFGAGPTGLMLAQLLRQNG 163
                    59999**************997 PP

>> Staph_opine_DH  Staphylopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.7e-05     0.031       2      61 ..     142     200 ..     141     249 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.7e-05
                     SEEEES-SHHHHHHHHHHHHH--SSEEEE--SSHHHHHHHHHHHTT--EEEEE..-GGGG CS
  Staph_opine_DH   2 rvLllGtGpaaiqlavllkkklearlgiagresvrserlfealarsaqlvrvsvqnekhr 61 
                     +vL+ G+Gp+ + la ll++++ +++ ia+ ++ +  +l++ l+++++ ++ s +n +++
      CCE31182.1 142 HVLMFGAGPTGLMLAQLLRQNGGCQVTIAAPKGLKM-DLAKNLDAADTYIELSRDNPEAQ 200
                     79****************************999986.68888999988888777777665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.1   3.7e+03      47      78 ..      26      57 ..      11      60 .. 0.79
   2 ?   12.0   0.0   0.00013      0.23       1      30 [.     142     172 ..     142     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.1
                HHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox 47 qeklekngievllntkveeiegsedgvesvkl 78
                  +l++n + v +  ++e+++ ++++v++ k+
  CCE31182.1 26 LPELRDNDVLVQTWYEPEQMTLNDENVTQFKV 57
                55799999999999999999999988877665 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00013
                 EEEEECSSHHHHHHHHHHHH.TTSEEEEEES CS
   Pyr_redox   1 kvvvvGgGyiglElAgalae.lgkkVtvver 30 
                 +v+  G+G +gl+lA+ l++  g++Vt+   
  CCE31182.1 142 HVLMFGAGPTGLMLAQLLRQnGGCQVTIAAP 172
                 78999*************88466****9765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00023      0.41     134     170 ..     133     169 ..      85     191 .. 0.81
   2 ?    0.6   0.0      0.15   2.6e+02      75     114 ..     189     226 ..     175     268 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00023
                  HHHCCSS-TSEEEEES-SHHHHHHHHHHHHH.T-EEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
  Pyr_redox_2 134 ealklkllpkrivvvGgGyiGvElAaalakl.gkevtl 170
                  e+++ kl   +++  G+G++G+ lA+ l++  g++vt+
   CCE31182.1 133 EKIRPKLG-SHVLMFGAGPTGLMLAQLLRQNgGCQVTI 169
                  44444444.69*****************9998999996 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.15
                  CEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  75 vvkidpgkkkvklekkkegdeekiaydklvlAtGssprdl 114
                  ++++ +++ + + e++k  + + + +d +v AtGs   + 
   CCE31182.1 189 YIELSRDNPEAQFEQLK--KDNPYGFDIVVEATGSVKILE 226
                  55555666666666666..4569999********877655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   9.8e-05      0.18       3      24 ..     147     169 ..     146     170 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.8e-05
                    --SHHHHHHHHHHHCC.TEEEEE CS
  NAD_binding_8   3 GaGlsGlvaAylLaka.gfdvll 24 
                    GaG +Gl +A+lL+++ g++v++
     CCE31182.1 147 GAGPTGLMLAQLLRQNgGCQVTI 169
                    9**************99999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2586.72
//
Query:       CCE31183.1  [L=368]
Description: related to F1F0-ATPase complex assembly protein (ATP12 protein) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-41  139.6   0.0    1.1e-40  138.7   0.0    1.4  1  ATP12     ATP12 chaperone protein


Domain annotation for each model (and alignments):
>> ATP12  ATP12 chaperone protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   0.0   5.9e-45   1.1e-40       1     128 [.      89     232 ..      89     233 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 5.9e-45
                 B---S-EEEEE...TTSEEEEETTEE-BET.TSEB--BSSHH..HHHHHHHHHH....T-SSB--GGG-HHHHHHHHHHH.TT..C.......CCHHHH CS
       ATP12   1 kRFwkevsveekekdggyqvlLDgrplrtp.tknilavpsskklLAeaiaaEWdl..saqqalikphllpltslasraiDleaeda.......ttreai 89 
                 kRFwkev+v  +e+dg++q+ LD+rplr+  tk+i+++p sk++LA aia EWd+  s  qa+ k+hl+plt l+sra+D++a+da       ++r++i
  CCE31183.1  89 KRFWKEVTV--SEVDGAFQICLDNRPLRHAqTKEIISLPISKPALAFAIALEWDSltSTIQAT-KHHLIPLTGLVSRALDIQASDAdntpgavKIRDQI 184
                 8********..6699***************9***********************997777767.*******************999************* PP

                 HHHHHHHHHC-CCCEE..........--SSHHHHHHHHHHHHHHHHHH CS
       ATP12  90 vktllryldtDtllcr.........eaeepesLrerqeetwepilawl 128
                 ++t++ryldtD+llc+         +++  esLr++q++t+e+i++++
  CCE31183.1 185 TTTVMRYLDTDSLLCWaapagdfdiRNDAGESLRDVQKRTAEEIVSFM 232
                 *************************88******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2722.96
//
Query:       CCE31184.1  [L=355]
Description: probable G protein alpha subunit GNA-3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-115  385.1   0.3   3.7e-115  384.9   0.3    1.0  1  G-alpha    G-protein alpha subunit
    1.1e-15   57.5   0.7    4.5e-10   39.3   0.2    2.5  2  Arf        ADP-ribosylation factor family
    0.00028   20.3   1.0       0.14   11.5   0.2    2.4  2  Gtr1_RagA  Gtr1/RagA G protein conserved region
     0.0047   17.1   0.6        1.3    9.3   0.1    2.5  2  Roc        Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
        0.1   12.5   0.1       0.28   11.1   0.1    1.7  1  Rad17      Rad17 P-loop domain
        0.1   12.3   0.0       0.22   11.3   0.0    1.5  1  AAA_29     P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.9   0.3  1.2e-118  3.7e-115       1     354 []      15     344 ..      15     344 .. 0.98

  Alignments for each domain:
  == domain 1  score: 384.9 bits;  conditional E-value: 1.2e-118
                 XXXXXXXXXXXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT.......HHHC-SS-SC CS
     G-alpha   1 krtssaidkslkaerkarkkkrevkllllGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrsiktilealesleselsesfelqelkerld 99 
                 k++s+aidk +++++k+ +k  e+k+lllG++eSGKsTi+kq+k+++ kg+s++el ++r+ +++n+v+++k ++ a+e+++++     +   +k ++d
  CCE31184.1  15 KKKSQAIDKVIEEDSKRLRK--ECKILLLGSGESGKSTIVKQMKIIHLKGYSNDELYNYRPTVFKNLVECAKAVITAMEQFGIRP----QMGGNKSHID 107
                 689*****************..***************************************************************....99******** PP

                 CCS-HCHHHH..........HHCCHHC-HCHHHHHHHHCCSHHHHHHHCCGCCTT--TTHHHHHCTHHHHCSTT----CHHHHCS-----SEEEEEEEC CS
     G-alpha 100 plkkveasliaklssateeeqeiefnpraevgedikaLwndpgiqelyerrnkiklednaeyFlddleritspdYlptddDilkarlktvGisetkfev 198
                 +l++++a+             +  + p  +vg ++++Lw dp++ +l++++++++l+d+aeyF++++ ri + dYlp+++D+l+ar+kt+Gi+et+f++
  CCE31184.1 108 YLLSYQAEPG----------PQARIDP--QVGVAVQSLWADPAMDQLMQHQTEFYLMDSAEYFFQEVMRIVAVDYLPSEMDVLRARTKTTGIYETRFQM 194
                 *****99975..........899****..********************************************************************** PP

                 T-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHHHHHHCCCS-GGGCCTT CS
     G-alpha 199 dsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlDileeKlkkgklskyfps 297
                 + +l+++++dvgGqrserkkW+++f++v+ iiF+v+lse+dqvl e++++nr+ esl lF++++n++++ +t+iiLflnK+Di+++Kl +++l++yfp+
  CCE31184.1 195 G-QLSIHMFDVGGQRSERKKWIHCFENVTSIIFCVALSEYDQVLLEESSQNRMMESLLLFDSVVNSRWFMRTSIILFLNKVDIFKQKLVRSPLANYFPD 292
                 *.************************************************************************************************* PP

                 --H.CCHHHHHHHHHHHHHHCCCCCCESGGSCEEEEEE-TT-HHHHHHHHHHHHHHH CS
     G-alpha 298 yegrkndlesvlkylrnkFeeihkeksnnrrkiythftsatdtkevqkviesvrdti 354
                 y+g +nd+++++kyl ++F++++++    + ++y+h+t+atdt +++ v+++v++ti
  CCE31184.1 293 YSG-GNDVNKAAKYLLWRFNQVNRA----HLNLYPHLTQATDTSNIRLVFAAVKETI 344
                 **9.******************874....4589*********************997 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.1e-06    0.0061       9      36 ..      30      57 ..      21      94 .. 0.74
   2 !   39.3   0.2   1.5e-13   4.5e-10      43     129 ..     182     278 ..     173     285 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.1e-06
                TT.TTEEEEEEEESTTSSHHHHHHHHHH CS
         Arf  9 klkkkelrilllGLDnaGKtTilkklkl 36
                k  +ke++illlG  ++GK+Ti+k++k 
  CCE31184.1 30 KRLRKECKILLLGSGESGKSTIVKQMKI 57
                44589******************99874 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 1.5e-13
                 SSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CT..........THHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTT CS
         Arf  43 vPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadre..........RleeakeeLkalleeeelkevallvlaNKqDlpe 129
                 + T+g    + ++ +l+++++DvGGq++ R+ W + fe+++++if+v  ++ +          R++e+   ++++++++   +  ++++ NK D+ +
  CCE31184.1 182 TKTTGIYETRFQMGQLSIHMFDVGGQRSERKKWIHCFENVTSIIFCVALSEYDqvlleessqnRMMESLLLFDSVVNSRWFMRTSIILFLNKVDIFK 278
                 5577888888999*********************************9755432111112222288888888888889999999***********865 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0009       2.7       1      17 [.      37      53 ..      37     115 .. 0.83
   2 !   11.5   0.2   4.8e-05      0.14      21     127 ..     168     280 ..     161     288 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0009
   Gtr1_RagA  1 kvLLmGksgsGKtsmrs 17
                k+LL+G ++sGK+++ +
  CCE31184.1 37 KILLLGSGESGKSTIVK 53
                89************964 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.8e-05
   Gtr1_RagA  21 dnylardtlrlga...tidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDve..........sre.leedletlkeileal 105
                   yl+ ++  l a   t+ + ++++  +g+l ++++D+gGq++  ++       + f+nv ++i+ +  +          s++ + e+l  + ++++  
  CCE31184.1 168 VDYLPSEMDVLRArtkTTGIYETRF-QMGQLSIHMFDVGGQRSERKKW-----IHCFENVTSIIFCVALSeydqvlleesSQNrMMESLLLFDSVVNS- 259
                 5666666666654211555556666.589************9987775.....799*********999886777776544222244445455554443. PP

   Gtr1_RagA 106 rqyspeakvfvlihKmDliqed 127
                  +   + ++  +++K+D  +++
  CCE31184.1 260 -RWFMRTSIILFLNKVDIFKQK 280
                 .344566778888888887765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00043       1.3       1      19 [.      37      55 ..      37      67 .. 0.92
   2 !    5.9   0.0    0.0048        14      45      89 ..     186     231 ..     162     276 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00043
                EEEEESSTTSSHHHHHHCH CS
         Roc  1 KvvlvGdsgvGKtsllkrf 19
                K++l+G +++GK++++k++
  CCE31184.1 37 KILLLGSGESGKSTIVKQM 55
                9***************986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0048
                 GGCTTBTTTTCEEEEEEEE-SGGCTTT.T-HHHHCTSCEEEEEEEG CS
         Roc  45 kgvendkkvkkvklniWDtaGqerfrs.lhplylreaalailvyds 89 
                   +e++ ++ +++++++D++Gq   r+   +++ +  +++++v  s
  CCE31184.1 186 GIYETRFQMGQLSIHMFDVGGQRSERKkWIHCFENVTSIIFCVALS 231
                 3344555677899*********887763778887777777766432 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   9.3e-05      0.28      22      78 ..      12      65 ..       6     103 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.3e-05
       Rad17 22 avhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklrewln 78
                a  kkk +++++ ++ d+   rk+  +L+ G    gkst+vk +  ++      ++n
  CCE31184.1 12 AEQKKKSQAIDKVIEEDSKRLRKECKILLLGSGESGKSTIVKQMKIIHLKG---YSN 65
                6679**********9998777766544455666678******986665332...223 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.3e-05      0.22      23      39 ..      35      52 ..      25      61 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.3e-05
      AAA_29 23 g.atlltGpsGsGKSTll 39
                +  +ll G  +sGKST++
  CCE31184.1 35 EcKILLLGSGESGKSTIV 52
                3468*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2523.95
//
Query:       CCE31185.1  [L=749]
Description: uncharacterized protein CPUR_05036 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.8e-141  470.6   0.0   3.5e-141  470.3   0.0    1.1  1  Avl9      Transport protein Avl9
    8.9e-06   25.6   0.1     0.0005   20.0   0.0    2.2  2  SPA       Stabilization of polarity axis
    1.1e-05   25.2   0.2    0.00068   19.3   0.2    2.8  1  DUF2347   Uncharacterized conserved protein (DUF2347)


Domain annotation for each model (and alignments):
>> Avl9  Transport protein Avl9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  470.3   0.0  5.9e-145  3.5e-141       4     379 .]      44     422 ..      42     422 .. 0.98

  Alignments for each domain:
  == domain 1  score: 470.3 bits;  conditional E-value: 5.9e-145
        Avl9   4 ilvvgFhHkkGpevefsyppeeeekeekesewklLpflalpDGsHnfeedfvyFtleedeseteeektlfgiscvrQikaeelkartadvtRstvQKsv 102
                 ++vvgFhH++Gpeve ++++++  + +  + w lLpf+al+DG+H++eedf+yFtl + ++++e++++lfgisc+rQ+++++l +r+advtR tvQK+v
  CCE31185.1  44 VTVVGFHHARGPEVESWFGAGDGIDPAITYGWPLLPFMALSDGAHASEEDFSYFTLLKPKTDSEPATSLFGISCTRQLDSSQLINRPADVTRCTVQKAV 142
                 89******************9999*************************************************************************** PP

        Avl9 103 vvlsklp.ifgkikekLslitkayfeqkdfsnteilkelyeqlnae.lkskekeeleesklfvglslrelvlkfrhkvLvlfKlllLekkvlvygspve 199
                 vv++++p  fg+++e+L ++t+a+f+q++f++t+il+++ e+l++e  + ++ ++++ ++l++g+slrel+++f+ ++Lvl+K++lL+ k+l++gs+++
  CCE31185.1 143 VVIVDSPqGFGMMRERLGIVTQAWFAQREFTDTDILRRFQESLADEkARGSTLSDTSGRDLHLGMSLRELIHEFKWQALVLLKCCLLQPKMLFFGSKCD 241
                 *******89**********************************98846666777888999*************************************** PP

        Avl9 200 klcelilsliSLipelieklqdsasplleslesdlelkkpeslkesdrksvleqlglPlqiFekgalflPYlpLqqldlLsdksvksflvGtsNsLllq 298
                 +lc++++sliSLip+li++lqd+a+p l+s e +  l++p+sl++s+r+s+l+++glPlqiF kg +f PY+pLqqld L+d  +ks++vG++NsLllq
  CCE31185.1 242 RLCMVQFSLISLIPGLIQHLQDCADPELHSHEAK--LAQPTSLQSSNRNSLLSFMGLPLQIFGKGGFFGPYTPLQQLDILADFGTKSYIVGSTNSLLLQ 338
                 ********************************99..*************************************************************** PP

        Avl9 299 qkelladvlvdvdeaeieikdkelkkalqlsteDkrfidelvkkveetkedaeeet...egfeGsddwiRaqfeeYlvallssv 379
                 q+++++d+l+++de++++i++++lk+al l+++D+r+id+l+++v+et+++a+ ++   +++ Gs+d+iR+qfe Yl++l+ssv
  CCE31185.1 339 QRDRYSDILINLDEDTVNITSPSLKSALALTAADRRWIDFLTHEVNETWDEANPSRpknMQYVGSEDFIRSQFEAYLLGLISSV 422
                 ****************************************************99988889*********************996 PP

>> SPA  Stabilization of polarity axis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.014        82       5      53 ..     210     256 ..     207     274 .. 0.82
   2 !   20.0   0.0   8.3e-08    0.0005      66     112 ..     308     357 ..     288     359 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.014
         SPA   5 lkllekftpeiillinalltskriivlstkasadevsefvLalsnlisp 53 
                  +l+++f  +  +l++  l++ + +++++k+    ++ +  +l +li +
  CCE31185.1 210 RELIHEFKWQALVLLKCCLLQPKMLFFGSKCDR--LCMVQFSLISLIPG 256
                 5789999999999***************99888..88888888888876 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 8.3e-08
         SPA  66 fPyvdlseldalekvpg..yIvGvtNPiFeeqeql.WDvlydldsgsvkl 112
                  Py++l++ld l ++ +  yIvG tN +  +q++   D+l++ld+++v++
  CCE31185.1 308 GPYTPLQQLDILADFGTksYIVGSTNSLLLQQRDRySDILINLDEDTVNI 357
                 4************976555********9965555516**********987 PP

>> DUF2347  Uncharacterized conserved protein (DUF2347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   1.1e-07   0.00068      30     275 ..      80     352 ..      76     359 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.1e-07
     DUF2347  30 fksLPSGihevsedlvyfv..........heeyyglsaFrqneveeeeer......nvkmysvGvlvdssnerlskawryaekLkellkkllese..dn 110
                 f +L  G h  +ed+ yf+           + ++g+s+ rq    +  +r           +v v+vds++++        e+L    + +  ++   +
  CCE31185.1  80 FMALSDGAHASEEDFSYFTllkpktdsepATSLFGISCTRQLDSSQLINRpadvtrCTVQKAVVVIVDSPQGFG----MMRERLGIVTQAWFAQRefTD 174
                 7899999**********99999999998888999***9999999998888887775333478999999988888....567888888888887776888 PP

     DUF2347 111 tsvLeeyfekekakkedeesssekksesrerslsdassleteeealssthllssLpelldklGplifpLykaaLlrkrILllssapveelcslvYllsl 209
                 t++L  +                     ++ ++++a+ ++ +++   + hl  sL el++++  + ++L k +Ll+ + L++ s   ++lc +    sl
  CCE31185.1 175 TDILRRFQ--------------------ESLADEKARGSTLSDTSGRDLHLGMSLRELIHEFKWQALVLLKCCLLQPKMLFFGSK-CDRLCMVQ--FSL 250
                 88888876....................334455666666677778899*********************************888.57777654..466 PP

     DUF2347 210 LssipksleellksessrlrplfnvgvaDipsLekekke....................................sgyiActtdeiLalkkeLy.Dvlv 271
                 +s+ip  +++l++ ++  l+   +  +a   sL++ +++                                    ++yi  +t++ L  +++ y D+l+
  CCE31185.1 251 ISLIPGLIQHLQDCADPELH-SHEAKLAQPTSLQSSNRNsllsfmglplqifgkggffgpytplqqldiladfgtKSYIVGSTNSLLLQQRDRYsDILI 348
                 77777666666554433333.234444444455444444455555556666666677777777777777776666666666666666666555556666 PP

     DUF2347 272 klpp 275
                 +l++
  CCE31185.1 349 NLDE 352
                 6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5225.95
//
Query:       CCE31186.1  [L=770]
Description: probable SCF complex member Cullin 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-194  648.0  11.3     2e-194  647.7  11.3    1.1  1  Cullin           Cullin family
    7.4e-26   90.0   2.9    7.4e-26   90.0   2.9    3.1  3  Cullin_Nedd8     Cullin protein neddylation domain
     0.0077   16.7   4.2      0.015   15.8   0.4    3.4  4  WAC_Acf1_DNA_bd  ATP-utilising chromatin assembly and remodel
  ------ inclusion threshold ------
        1.4    8.8   5.5         37    4.2   0.3    3.4  2  DUF1706          Protein of unknown function (DUF1706)


Domain annotation for each model (and alignments):
>> Cullin  Cullin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  647.7  11.3  4.5e-198    2e-194       1     618 []      24     671 ..      24     671 .. 0.94

  Alignments for each domain:
  == domain 1  score: 647.7 bits;  conditional E-value: 4.5e-198
      Cullin   1 Wekleeaiqeilk...knvsklsfeelYravynlvlsk................ekkqgekLydklkelieehlkellkellkeesdeelLkalkkeWe 80 
                 W+ l+++i++i++   + +  + ++ +Y+av+n+++s+                ++  ge+Ly++l e++++hl++l++e  ++++de+lL++++keW+
  CCE31186.1  24 WAYLQAGITQIMNdleQGIDMKMYMGIYTAVHNFCTSQkavglsgpamhsnhrgAHLLGEDLYNNLIEYLQKHLEQLVDES-RSHTDESLLNYYIKEWS 121
                 99**********77757*******************99****************999*********************997.9999************* PP

      Cullin  81 dhktsmkmirdifmyldrvyvk........klpsvydlglelfrdhvfriklkdrlieallkliekeRegevidrsllksviemlvelgedse.....d 166
                 +++t++k+i+++f+yl+r+ vk        ++ +vy+l+l+++r+ +f  ++++++++a+lkl+ek+R+ge+i++ ++k+v++++v+lg d+      +
  CCE31186.1 122 RYTTAAKFIHHLFRYLNRHWVKreidegkkNVYDVYTLHLVQWRKALFT-RVSSKVMDAVLKLVEKQRNGETIEHGQIKQVVDSFVSLGLDEAdpsrsT 219
                 ******************665543333323455***************5.899*************************************999775444 PP

      Cullin 167 kkvYeeeFekafleateefYraeaeellaensvaseYlkkaeerleeEeervekyldsstkkkllevleeelikkhleelleeelkklledekledLkr 265
                  +vY ++Fe++fleat+efY+ae+++++aen ++ eY+kka++rleeEeerv+ yl+ + +  l+++++  li++h++ l +e ++ ll++++ ed++r
  CCE31186.1 220 MDVYVNNFERPFLEATKEFYQAESKRFVAEN-SIVEYMKKAQARLEEEEERVSMYLHLDIALGLKKTCNMALIADHSTLLRDE-FQVLLDNDREEDMAR 316
                 44****************************9.555******************************************999999.*****988******* PP

      Cullin 266 lykllsrv.dgleeLrkaleeyikeeg.kaivkdakekektedakkyveklLelkdkfdklvkeafnndkefekaldeafeefvnknkv....nsksae 358
                 +y+llsr+ dgle+Lr+++e++++++g +a++k ++++ ++ ++k yv++lLe++++++ lvk+afn+++ef+++ld+a++efvn+n+v    +sks+e
  CCE31186.1 317 MYNLLSRIpDGLEPLRTRFETHVRKAGlAAVQKVQSSEGDKLEPKIYVDALLEVHSQYQLLVKQAFNDEPEFTRSLDNACREFVNRNEVckvsSSKSPE 415
                 ********66*****************999999999999************************************************99********** PP

      Cullin 359 llakYiDelLkkglkglseeeleekldkvlvlfryiedKDvFekyYkkhLakRLllgksasddaEksmiskLkeecGseftskLegMfkDiklskdlnk 457
                 llakY+D lL+k++ +++e++le++l++++++f+yiedKDvF+k+Y+++La+RL++++s+sddaE smiskLke+cG+e+t+kL++Mf+D+++skdlnk
  CCE31186.1 416 LLAKYADVLLRKSTASIEEADLERTLTQIMTVFKYIEDKDVFQKFYSRMLARRLVHSNSSSDDAETSMISKLKEACGFEYTNKLQRMFQDMQISKDLNK 514
                 *************************************************************************************************** PP

      Cullin 458 efkeyleeekkkkkkvdlsvkVLtagaWpterskesevsvklpeeledlieeFeefYkskhsgrkLtWlhslgsaelkatfpkk...kyelqvstfqmv 553
                 ef+e+le   +++k+vd   ++L +g+Wp +++   +++++ p+e++  ie+F +fYk+kh grkLtWl++l+++e+++++ k+   ++++qvs++qm+
  CCE31186.1 515 EFREHLE-IIESPKTVDSAYSILGTGFWPLTPP---STNFHPPTEIAAEIERFVRFYKHKHDGRKLTWLWHLCKGEIRTSYCKSsrtPFTFQVSIYQMA 609
                 ******8.6667789**************7665...479*******************************************96566779********* PP

      Cullin 554 vLllFndeeeklsyeeiqeatglpekeLkrtLqsLavakkarvLlkepks.kdveptdefsvNaeF 618
                 +LllFn+ +++++ye+i  at+l+++ L+++L  +    ka+vLl +  s ++   +++fs+N +F
  CCE31186.1 610 ILLLFNE-KDTYTYEDILGATQLSSEVLDQALGVIL---KAKVLLLSGGSgDKPGAGKTFSLNYDF 671
                 ******5.59*************************9...78899998855588889*******998 PP

>> Cullin_Nedd8  Cullin protein neddylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.9   1.3e+04      38      50 ..     192     204 ..     179     206 .. 0.72
   2 ?   -1.2   0.1      0.47   2.1e+03       2      18 ..     244     260 ..     243     262 .. 0.83
   3 !   90.0   2.9   1.6e-29   7.4e-26       1      63 []     702     764 ..     702     764 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.9
  Cullin_Nedd8  38 tpsiadikkrIes 50 
                   t+++ +ik++++s
    CCE31186.1 192 TIEHGQIKQVVDS 204
                   5677889998886 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.47
  Cullin_Nedd8   2 RklaiqaaIVRiMKsrk 18 
                   ++++ + +IV  MK+ +
    CCE31186.1 244 KRFVAENSIVEYMKKAQ 260
                   67888999******976 PP

  == domain 3  score: 90.0 bits;  conditional E-value: 1.6e-29
  Cullin_Nedd8   1 dRklaiqaaIVRiMKsrktlshneLvsevieqlskrftpsiadikkrIesLiekeYleRdend 63 
                   dRkl++q+aIVRiMK+rk+++h++Lvse+i+q+++rf p++ dikk+Ie L++keYleR ++d
    CCE31186.1 702 DRKLVLQSAIVRIMKARKRMKHTQLVSETINQIRSRFVPKVGDIKKCIEILLDKEYLERLDDD 764
                   8**********************************************************9876 PP

>> WAC_Acf1_DNA_bd  ATP-utilising chromatin assembly and remodelling N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.1   9.2e+03      66      86 ..      95     115 ..      83     145 .. 0.53
   2 ?   -3.7   0.0       3.9   1.8e+04      58      78 ..     170     190 ..     164     195 .. 0.73
   3 ?   -1.0   0.0      0.59   2.6e+03      56      88 ..     331     363 ..     326     375 .. 0.85
   4 !   15.8   0.4   3.3e-06     0.015      43      98 ..     686     741 ..     684     742 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.1
  WAC_Acf1_DNA_bd  66 kpvlelvqfstrsrlddLved 86 
                      k++ +lv  s++++ ++L ++
       CCE31186.1  95 KHLEQLVDESRSHTDESLLNY 115
                      444444444433333333333 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.9
  WAC_Acf1_DNA_bd  58 ekfpealkkpvlelvqfstrs 78 
                      +++++++ ++vl+lv+++++ 
       CCE31186.1 170 TRVSSKVMDAVLKLVEKQRNG 190
                      566777888999999888765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.59
  WAC_Acf1_DNA_bd  56 leekfpealkkpvlelvqfstrsrlddLvedvy 88 
                      l+++f+ +++k+ l+ vq+ ++s+ d+L  ++y
       CCE31186.1 331 LRTRFETHVRKAGLAAVQKVQSSEGDKLEPKIY 363
                      6678999999999********999999988877 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 3.3e-06
  WAC_Acf1_DNA_bd  43 feAlesEkeaskeleekfpealkkpvlelvqfstrsrlddLvedvyeelkerffvg 98 
                      +eA+++E e +k++ee+ +  l+++++++++ ++r +  +Lv++ ++++++rf+++
       CCE31186.1 686 KEAKQEEVETNKTIEEDRKLVLQSAIVRIMKARKRMKHTQLVSETINQIRSRFVPK 741
                      69***************************************************985 PP

>> DUF1706  Protein of unknown function (DUF1706)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.3    0.0082        37     102     147 ..      86     131 ..      82     134 .. 0.92
   2 ?    4.0   0.1    0.0097        43     106     152 ..     434     476 ..     415     488 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0082
                 HHHHHHHHHHHHHHHHHHHHHS-HHHHHSTTS-HHHS---HHHHHH CS
     DUF1706 102 leelleelkesheellalieslsdeeLfekkgrkWtgkwtlgkyiq 147
                 +++l+e l++  e+l++  +s++de L +    +W + +t +k+i+
  CCE31186.1  86 YNNLIEYLQKHLEQLVDESRSHTDESLLNYYIKEWSRYTTAAKFIH 131
                 678899999999*******************************998 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0097
                 HHHHHHHHHHHHHHHHHS-HHHHHSTTS-HHHS---HHHHHHHCTHH CS
     DUF1706 106 leelkesheellalieslsdeeLfekkgrkWtgkwtlgkyiqsntss 152
                 +++l+++ ++++++ + ++d++ f     k+++ +   + ++sn+ss
  CCE31186.1 434 EADLERTLTQIMTVFKYIEDKDVF----QKFYSRMLARRLVHSNSSS 476
                 568999******************....8899999999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1103  (0.0615204); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5306.44
//
Query:       CCE31187.1  [L=388]
Description: uncharacterized protein CPUR_05038 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2859.42
//
Query:       CCE31188.1  [L=893]
Description: probable glycogen phosphorylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
          0 1052.1   0.0          0 1051.9   0.0    1.0  1  Phosphorylase  Carbohydrate phosphorylase


Domain annotation for each model (and alignments):
>> Phosphorylase  Carbohydrate phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1051.9   0.0         0         0       1     711 []     174     888 ..     174     888 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1051.9 bits;  conditional E-value: 0
                    HHCTT--HHHHHTTS--ECESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTCCG-TT-EE-GGG-EEEEESCEEE CS
  Phosphorylase   1 lkelgldleeleeqeedagLGnGGLGRLAacfldslatlelpavGygirYeyGlFkQkiedgaqveepdeWlkkgnpweiereekavevkfggkve 96 
                    l++lg+++e++ +qe+da+LGnGGLGRLAacfldslatl++pa+Gyg+rY+yG+FkQ+i dg+qve+pd+Wl+  npwe++r+++ v+++f+g+v+
     CCE31188.1 174 LNDLGFRIEDIIKQEHDAALGNGGLGRLAACFLDSLATLNFPAWGYGLRYRYGIFKQEIIDGYQVEVPDYWLS-FNPWEFPRHDVVVDIQFFGQVH 268
                    5799*********************************************************************.5********************* PP

                    CCTTE....ESEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-S.TTTTHHCCCTTSCCHHHHCHHHHHGGGTBSS-SSSSCCHCHHHHHHHH CS
  Phosphorylase  97 eeeeee.klkvkwvdeeevlavpydvpvvGyktktvntLrLwsakas.eefdleafnegdyikaveekneaeniskvLYPndsteegkeLrLkQqY 190
                    ++++++ k+ + w+++e v+av+ydvp++Gy+t t+n+LrLws+kas  efd+++fn+gdy+++v+e+++ae+is+vLYPnd+ e+gkeLrLkQqY
     CCE31188.1 269 KSTNADgKTVSVWEGGEIVQAVAYDVPIPGYDTPTTNNLRLWSSKASgGEFDFQKFNNGDYESSVAEQQRAETISAVLYPNDNLERGKELRLKQQY 364
                    9998888999*************************************779********************************************** PP

                    HHHHHHHHHHHHHHHTCTTHGGGHHHHEEEEEESSTTTTHHHHHHHHHHHCC---HHHHHHHHCCCEEEEE--SSGGGS-EEEHHHHHHHSHHHHH CS
  Phosphorylase 191 flvsaslqdilrrfkkkkkdleelpekvaiqlnDtHPalaipelmriLvdeeglewdeaweitkktfaytnhtvlpealekwpvellekllprhle 286
                    f+v+asl di+rrfkk+k++++e+p++vaiqlnDtHP+lai+el riL+d+eglewd+aw+i+++tf ytnhtvlpealekwpv+l+++llprhl+
     CCE31188.1 365 FWVAASLYDIVRRFKKSKRTWKEFPDQVAIQLNDTHPTLAIVELQRILIDQEGLEWDAAWDIVTNTFGYTNHTVLPEALEKWPVALVQHLLPRHLQ 460
                    ************************************************************************************************ PP

                    HHHHHHHHHHHHHHHHSTT-HHHHHHHSSEE..TSCEEEHHHHHHHCCSEEEESSHHHHHHHHHTTTHHHHHHS.GGGEEE----B-CHHHCCCTS CS
  Phosphorylase 287 iieeinerfleevekklpedeeklerlsiie..eekkvrmanlaivgshsvngvaalhsellkkevlkdfyely.pekfnnktnGitprrwlllan 379
                    ii++in  fl++vek++p+d++ l+r+siie  + k+vrma+laivgsh+vngva+lhs+l+k++++kdf+e+y p+kf+n+tnGitprrwl++an
     CCE31188.1 461 IIYDINLFFLQTVEKAFPNDRDILRRVSIIEesQPKMVRMAYLAIVGSHKVNGVAELHSDLIKTTIFKDFVEIYgPDKFTNVTNGITPRRWLHQAN 556
                    *******************************77779*************************************99********************* PP

                    HHHHHHHHHHCS.SGGCCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHH CS
  Phosphorylase 380 pelaelitekig.eewvkdleeLkkLekladdkefleelaeikqenKerlaelikekegvevdpeslfdvqvkRlheYkRqlLnvLhiitlYneik 474
                    p+l+eli++k g +e+++dl+ L+kLe+++ dk+f++e+aeik +nK rla++ik+ ++v v+p++lfdvqvkR+heYkRq+Ln++ +i++Y ++k
     CCE31188.1 557 PRLSELIATKCGgQEFLRDLTLLNKLEQYVGDKDFRREWAEIKYANKVRLAQHIKNANDVVVNPSALFDVQVKRIHEYKRQQLNIFGVIHRYLSLK 652
                    ***********98*********************************************************************************** PP

                    HS...TTS----EEEEEE----TT-HHHHHHHHHHHHHHHHHCC-TTTCCCEEEEEETT-SHHHHHHHGGG-SEEEE---TTTSSS-SHHHHHHHT CS
  Phosphorylase 475 en...pekkvvprtvifggkaapgYalAkkiiklinsvaevvnndpevkdklkvvflenynvslaekiipaadlseqistagkeASGTgnmkfmln 567
                    ++   ++kk  pr+ ifggkaapgY++Ak+ii+lin+v++vvn+d+e++d lkv+fle+ynvs+ae+i+pa+d+se+istag+eASGT+nmkf+ln
     CCE31188.1 653 AMspeDRKKQLPRVSIFGGKAAPGYWMAKQIIHLINAVGAVVNKDEEIGDLLKVIFLEDYNVSKAEVICPASDISEHISTAGTEASGTSNMKFVLN 748
                    *974334779************************************************************************************** PP

                    T-EEEEESSTCHHHHHHHH-GGGSEEES-BHHHHHHHHHHT.--HHHHHHH-HHHHHHHHHHHCTTTTTTSTTTTHHHHHHHCTCC-TT-CHHHHH CS
  Phosphorylase 568 GaltigtlDGanvEiaeevgeenifiFGltaeeveelkkkg.ynpkelyekdpelkevldalesgtfsekekeefkelvdsllekkDeylvlaDfe 662
                    G+l+igt+DGan+Ei++e+g+ n+f+FG  ae+ve+l++++ y    + + d++l++v++++e+gtf   ++++f  ++ ++ ++ D+ylv +Df+
     CCE31188.1 749 GGLIIGTCDGANIEITREIGDSNMFLFGSLAEDVEDLRHAHtY---GTHAIDQDLDTVFREIEKGTFG--TPQDFGAMIGAVRNHGDYYLVSDDFH 839
                    ***************************************9744...45566789*************5..5679********************** PP

                    HHHHHHHHHHHHHCSHHHHHHHHHHHHHCGGGGBHHHHHHHHHHHTTTS CS
  Phosphorylase 663 sYveaqekveeaYkdkkewakksilniaksgkFssDrtikeYaeeiWkv 711
                    sY+e+q+ v+eaY+d+++w  k+i+++a++g+F+sDr+i+eYaeeiW+v
     CCE31188.1 840 SYIETQHLVDEAYRDQDKWIAKCITAVARMGFFTSDRCINEYAEEIWNV 888
                    ***********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 6465.27
//
Query:       CCE31189.1  [L=358]
Description: probable osmotic sensitive-2 protein (putative mitogen-activated protein (MAP) kinase homolog) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-67  227.2   0.0    2.8e-67  226.9   0.0    1.1  1  Pkinase        Protein kinase domain
    1.8e-32  112.7   0.0    2.3e-32  112.3   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
    5.6e-06   25.6   0.1    7.5e-06   25.1   0.1    1.2  1  Haspin_kinase  Haspin like kinase domain
    8.6e-05   22.0   0.1    0.00027   20.3   0.1    1.7  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00064   19.1   0.0      0.039   13.2   0.0    2.2  2  Kinase-like    Kinase-like
    0.00071   19.6   0.1     0.0018   18.2   0.0    1.6  2  APH            Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.029   14.0   0.1       0.06   13.0   0.0    1.6  2  FTA2           Kinetochore Sim4 complex subunit FTA2
      0.029   14.0   0.0      0.047   13.3   0.0    1.3  1  RIO1           RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.9   0.0   1.2e-70   2.8e-67       1     264 []      20     299 ..      20     299 .. 0.89

  Alignments for each domain:
  == domain 1  score: 226.9 bits;  conditional E-value: 1.2e-70
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladllerkgslsee 98 
                 y++l+ +G G+fG V +a+++ t++ vAvKki k   +    k++ rE+k+lk+lkh+n++ l ++f +  +++y+v+e++ ++ l++ll+ ++ l+ +
  CCE31189.1  20 YSDLQPVGMGAFGLVCSARDQLTNQNVAVKKIMKPFSTPVLAKRTYRELKLLKHLKHENVISLSDIFISpLEDIYFVTELLGTD-LHRLLT-SRPLETQ 116
                 678999************************************************************9985689********966.999997.689**** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkpp 196
                  ++ +++qi++gl+y+Hs+g++HrDlKp+NiL++e+ +lKi+DFGla+  + +  +t +v t++Y+APE++ + ++y+ +vD+Ws+G+i++e+l gkp+
  CCE31189.1 117 FIQYFLYQIMRGLKYVHSAGVVHRDLKPSNILVNENCDLKICDFGLARIQDPQ--MTGYVSTRYYRAPEIMlTWQKYDVEVDIWSAGCIFAEMLDGKPL 213
                 ************************************************98885..7**************9899************************* PP

                 TTTSSHHHHHHHHHHTHHHHHHHCT....SHH...HHHTTS.....................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 197 fsgekgkekvekeldqlekilkilg....etkeklpeasei.....................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 f+g++       +++q+  i+++lg    ++ ++++ ++++                     ++ a+dll+++l  dpkkR+ta+++l+h+yl
  CCE31189.1 214 FPGKD-------HVNQFSIITELLGtppdDVINTIASENTLrfvkslpkrerqplmnrfknaDHLAIDLLENMLVFDPKKRITATSALEHEYL 299
                 **444.......45555555556665444333333333333566777999999999999998999**************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.0     1e-35   2.3e-32       5     211 ..      24     219 ..      21     292 .. 0.86

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 1e-35
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkkekekl 100
                  + +G GafG V++++ +     ++++VavK++ k  +t    ++ ++e+k++k+lkh+n+++l  + +   e +++vte++   dL+  L+++   +l
   CCE31189.1  24 QPVGMGAFGLVCSARDQ----LTNQNVAVKKImKPFSTPVLAKRTYRELKLLKHLKHENVISLSDIFIsPLEDIYFVTELLG-TDLHRLLTSR---PL 113
                  568**********9988....89999***98747777778899***********************9977788******985.69*****998...9* PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHH.SEEEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslke.kkftsksDvWsfGvllwE 197
                  +++ +  f +q+ +G++y++s  +vHrdl   N+L++en   ki+DfGLar    d ++   ++      + apE++ + +k+ ++ D+Ws G +  E
   CCE31189.1 114 ETQFIQYFLYQIMRGLKYVHSAGVVHRDLKPSNILVNENCDLKICDFGLARIQ--DPQM---TGYVSTRYYRAPEIMLTwQKYDVEVDIWSAGCIFAE 206
                  ***************************************************77..3333...3333444567***9766267**************** PP

                  HHTTSSGTTTTSHH CS
  Pkinase_Tyr 198 iftlgespypglkn 211
                  ++  g+  +pg ++
   CCE31189.1 207 MLD-GKPLFPGKDH 219
                  *99.7776666544 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   3.4e-09   7.5e-06     155     260 ..      60     169 ..      39     195 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3.4e-09
  Haspin_kinase 155 lvkgtypglllllqdkvlkek....pdfyseqqlflvlllkdkGtdLeev...klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdkn 243
                    l k ty +l ll +  +++e+     d++ +    ++ + +  GtdL ++   +  + + ++  ++qi+  L+ + ++    HRdL+  niLv++n
     CCE31189.1  60 LAKRTYRELKLLKH--LKHENvislSDIFISPLEDIYFVTELLGTDLHRLltsRPLETQFIQYFLYQIMRGLKYVHSA-GVVHRDLKPSNILVNEN 152
                    55667766655432..22222334458888888899999999999999995433344555677788888888887655.788************** PP

  Haspin_kinase 244 lnvtlidlklsRlesse 260
                        ++d+ l+R+++++
     CCE31189.1 153 CDLKICDFGLARIQDPQ 169
                    *************9544 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   1.2e-07   0.00027      41     166 ..      48     160 ..      27     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.2e-07
         Kdo  41 lgklskdlyrfklgrtravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragv 139
                 ++k++k  ++ ++ + r  rE++llk L+++ v  +  ++     +        +te l    dL  ll++ + l+ +  +  l ++ r  +  h+agv
  CCE31189.1  48 VKKIMKP-FSTPVLAKRTYRELKLLKHLKHENVISLSDIFISPLED-----IYFVTELLG--TDLHRLLTS-RPLETQFIQYFLYQIMRGLKYVHSAGV 137
                 6778888.78888889999999999999999999999999876554.....456788775..69*****97.669999********************* PP

         Kdo 140 nHadlyaknillqqeeeeeaeiwliDl 166
                  H+dl + nil++++      + + D+
  CCE31189.1 138 VHRDLKPSNILVNENC----DLKICDF 160
                 ************9986....4444455 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.013        29      18      60 ..      24      66 ..      17      81 .. 0.76
   2 !   13.2   0.0   1.8e-05     0.039     138     194 ..     110     165 ..      69     202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.013
  Kinase-like 18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlk 60
                 ++++ g +++v  ++dq t++++avk  + p   +  +   ++
   CCE31189.1 24 QPVGMGAFGLVCSARDQLTNQNVAVKKIMKPFSTPVLAKRTYR 66
                 678899999****************998776655544444444 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.8e-05
  Kinase-like 138 hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvra 194
                   ++let   ++   q++r   + ++ g+vh ++++ n+l +e+  l++ +f+ L r 
   CCE31189.1 110 SRPLETQFIQYFLYQIMRGLKYVHSAGVVHRDLKPSNILVNENCDLKICDFG-LARI 165
                  556666666666699***********************************97.4444 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.98   2.2e+03      25      52 ..      52      79 ..      39     134 .. 0.69
   2 !   18.2   0.0   8.2e-07    0.0018     164     201 ..     133     168 ..      88     170 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.98
                EEEE-TTS-HHHHHHHHHHHHHHHHTT- CS
         APH 25 lrrnpparaaeeirrevallrlLakagv 52
                ++ ++++ +a ++ re++ll++L   +v
  CCE31189.1 52 MKPFSTPVLAKRTYRELKLLKHLKHENV 79
                5555555578888888888888876655 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 8.2e-07
                 S-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEEC CS
         APH 164 lptvllHgDlhpgNllvdpddgrvtGviDfedaglgpp 201
                  +++++H+Dl+p N+lv+++ +    + Df++a++ +p
  CCE31189.1 133 HSAGVVHRDLKPSNILVNENCDL--KICDFGLARIQDP 168
                 4799**************44444..59********999 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.7e-05      0.06     171     211 ..     115     155 ..      95     164 .. 0.80
   2 ?   -3.4   0.0       2.7   6.1e+03       3      29 ..     251     278 ..     249     282 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
        FTA2 171 eelevsqlpkllrdlkklhklgIvvrDlkeenyidgkLvDl 211
                 +++++  l +++r lk +h++g+v+rDlk++n++ ++ +Dl
  CCE31189.1 115 TQFIQYFLYQIMRGLKYVHSAGVVHRDLKPSNILVNENCDL 155
                 5666677899**********************986654444 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.7
        FTA2   3 kplpei.dgPkLkpFdfsaekdiefley 29 
                 k+lp+  ++P +++F++ ++  i++le 
  CCE31189.1 251 KSLPKReRQPLMNRFKNADHLAIDLLEN 278
                 7788776789999999988888888875 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.1e-05     0.047     104     150 ..     115     161 ..      58     172 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1 104 eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvs 150
                 ++ ++  ++++++ + k ++ ag+vH DL   N+lv+e+ ++ i D++
  CCE31189.1 115 TQFIQYFLYQIMRGL-KYVHSAGVVHRDLKPSNILVNENcDLKICDFG 161
                 445666677777754.5667*******************999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2639.91
//
Query:       CCE31190.1  [L=168]
Description: related to phosphopantetheine protein transferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-08   34.0   0.0    3.7e-08   33.5   0.0    1.4  1  ACPS      4'-phosphopantetheinyl transferase superfamily
  ------ inclusion threshold ------
      0.012   15.7   3.4       0.79    9.9   0.1    2.5  3  4PPT_N    4'-phosphopantetheinyl transferase N-terminal domai


Domain annotation for each model (and alignments):
>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   4.2e-12   3.7e-08       2      63 ..      14     102 ..      13     158 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 4.2e-12
                 EEEEEEEHHHHH.HHH----.-HHHHHS-HHHHHHHTT.........--HHHH....................HHHHHHHHHHHHHHHHHT.T CS
        ACPS   2 vGiDieklsrlrkrvkrrga.kilkrifteeErkllks.........sdeear....................aelfarlWaaKEAllKal.g 63 
                 vG+Di ++sr+   +++++  ++++r++ +eE ++  +         +    +                    a ++a+++aaKEA++Ka  +
  CCE31190.1  14 VGTDICQISRIYAILNSPRRrRFIQRVLAPEEVAQHGTrlgedisveA----AksdrdgtgkgdvkgsalwktAAFLAGRFAAKEAVIKAHpY 102
                 9***********988877778*************98887776665542....04556899999***************************853 PP

>> 4PPT_N  4'-phosphopantetheinyl transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.1     1e+04      13      31 ..      32      49 ..      30      57 .. 0.63
   2 ?    9.9   0.1   8.8e-05      0.79      15      32 ..      83     100 ..      74     116 .. 0.82
   3 ?    6.4   0.1    0.0011        10      54      67 ..     145     158 ..     139     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.1
      4PPT_N 13 RkaeFlaGRicAraalarl 31
                R++ F+  R++A +  a++
  CCE31190.1 32 RRRRFIQ-RVLAPEEVAQH 49
                6666654.55555555555 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 8.8e-05
      4PPT_N  15 aeFlaGRicAraalarlg 32 
                 a FlaGR++A++a  + +
  CCE31190.1  83 AAFLAGRFAAKEAVIKAH 100
                 78**********986654 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0011
      4PPT_N  54 gSIsHtdglaaAav 67 
                  SIsH+ ++a A +
  CCE31190.1 145 ISISHDGDYATAFC 158
                 5*********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1255.09
//
Query:       CCE31191.1  [L=356]
Description: related to 3-isopropylmalate dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-97  327.1   0.0    1.9e-97  326.6   0.0    1.2  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.6   0.0  1.1e-101   1.9e-97       2     348 .]       8     352 ..       7     352 .. 0.95

  Alignments for each domain:
  == domain 1  score: 326.6 bits;  conditional E-value: 1.1e-101
                 EEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHS.SEEEEEE---CSSSSSSHHH.HHHHHHHHTTEEEEE CS
      Iso_dh   2 iallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikea.dvvllgavgtpkekevrpen.gLlaLrkeldlfanl 98 
                 i l++gdgiG+ev++a  +vl+a+ +  +l+++f + ++G +++++tg++lp++t+e +++  d +l+gav +p  + vr ++ +++aLrk ldl+an+
  CCE31191.1   8 IGLIPGDGIGKEVIPAGRRVLEALPSYLNLKFNFVNLKAGFETFEQTGNALPDDTVETLRNDcDGALFGAVSSPS-HAVRGYSsPIVALRKRLDLYANV 105
                 889********************************************************9988************.88999888*************** PP

                 EEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHT............TTSEEEEEE CS
      Iso_dh  99 rpvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkr............gkkkvtlvd 185
                 rpvk        +  ++     +d+vivRe+t+++Y++ee++++g   +++va  +k++se+++ ria +a ++A +r            +k +vt+++
  CCE31191.1 106 RPVKTT-----MNVSRP-----LDMVIVRENTEDLYVKEERTIEGP--DGKVAEAIKRISERASFRIAAMAGDIANRRdqlrqsgtpsihKKPTVTITH 192
                 ****99.....444454.....89*********************8..79*************************9987777777777766789***** PP

                 STTTTHHHH.HHHHHHHHHHCC.TTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEETSS-EEEEESS---CCC CS
      Iso_dh 186 Kanvlksse.lwrkiveevaee.eypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslgekkvaifEavHGsapdi 282
                 K+nvl++++ l+r+   + +++ +++++++e+q+vDs++++l+++p+ +dViv++Nl+GDilSD aaalvGslGl+pSa++g +++ai E++HGsapdi
  CCE31191.1 193 KSNVLSQTDgLFREASRRALSSpKFAGVNVEEQIVDSMVYKLFRQPEYYDVIVAPNLYGDILSDGAAALVGSLGLVPSANVG-ENFAIGEPCHGSAPDI 290
                 *********99999999888777***********************************************************.67************** PP

                 TTSS-S-THHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHH.TSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 283 agkdkaNpiavilSaalmLryslgleeaAdkiekAvekvlea.givTkDlageaakevstsefgdav 348
                  gk++aNpia++ S+almL++ l++ +aA+ki++Av+++le+ + +  Dl+g+a    st+++++++
  CCE31191.1 291 MGKGIANPIATLRSVALMLEF-LEEPAAAAKIYAAVDANLEEgKLLSPDLGGTA----STEQVVEDI 352
                 *********************.********************78899******9....999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2652.96
//
Query:       CCE31192.1  [L=68]
Description: uncharacterized protein CPUR_05043 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-08   33.3   0.0    3.2e-08   33.1   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase
  ------ inclusion threshold ------
        0.2   11.8   0.0       0.23   11.6   0.0    1.2  1  PmrD      Polymyxin resistance protein PmrD


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   3.5e-12   3.2e-08     284     348 .]       2      64 ..       1      66 [. 0.92

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 3.5e-12
                 TSS-S-THHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHH...TSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 284 gkdkaNpiavilSaalmLryslgleeaAdkiekAvekvlea...givTkDlageaakevstsefgdav 348
                 gk++aNpi ++ S+a++L++ +++ +aA+k+++Av+++l+    + +  Dl+g+a    st+++++++
  CCE31192.1   2 GKGIANPIVTLRSTARILEF-FEEPAAAAKMYAAVDANLNLeegKLLSPDLGGTA----STEQVVEDI 64 
                 9*******************.****************9876668899********....888888865 PP

>> PmrD  Polymyxin resistance protein PmrD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.6e-05      0.23      24      47 ..      26      49 ..       8      54 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.6e-05
                TSSSEEEEEEEESS---TT-EEEE CS
        PmrD 24 ggalkliaevesdlklkeGDlLsP 47
                + a k+ a v+++l+l+eG lLsP
  CCE31192.1 26 AAAAKMYAAVDANLNLEEGKLLSP 49
                5688*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 528.51
//
Query:       CCE31193.1  [L=287]
Description: uncharacterized protein CPUR_05044 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-38  130.4   3.4    2.4e-38  130.4   3.4    2.6  3  DUF1774   Fungal protein of unknown function (DUF1774)


Domain annotation for each model (and alignments):
>> DUF1774  Fungal protein of unknown function (DUF1774)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3      0.64   1.2e+04      56      70 ..      24      39 ..      21      46 .. 0.45
   2 ?   -2.0   0.9      0.26   4.7e+03       2      14 ..     112     124 ..     111     148 .. 0.64
   3 !  130.4   3.4   1.3e-42   2.4e-38       1      95 []     191     286 ..     191     286 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.64
     DUF1774 56 fviaavl.fvlslvva 70
                + i+++l  +ls++v+
  CCE31193.1 24 YKIFTLLsWLLSVAVS 39
                4444443123344433 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.26
     DUF1774   2 ilaNvfiwailvv 14 
                 il+N++++a++++
  CCE31193.1 112 ILNNLLHFAFVML 124
                 5677777666433 PP

  == domain 3  score: 130.4 bits;  conditional E-value: 1.3e-42
     DUF1774   1 RilaNvfiwailvvglffivaykDytlgfslslLslalgvgQlltkvialQwifafviaavlfvlslvvavakllgre.eeaeeessedkeraPLL 95 
                 Ri++N+fiw+il++g+ffi+a+kDyt+gf+ls+Ls+a+gv+Q++++vialQwifafvi++vlf++++vvav++++gr+   +++ +++d+er+PLL
  CCE31193.1 191 RIFGNIFIWSILAYGAFFIFAFKDYTMGFALSVLSAAIGVAQFQRQVIALQWIFAFVIMSVLFIATVVVAVPAWTGRDaMWRRSGPEADAERDPLL 286
                 9*****************************************************************************6445567899*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2075.17
//
Query:       CCE31194.1  [L=699]
Description: uncharacterized protein CPUR_05045 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      5289  (0.294997); expected 358.6 (0.02)
Passed bias filter:                     1144  (0.0638072); expected 358.6 (0.02)
Passed Vit filter:                       796  (0.0443973); expected 17.9 (0.001)
Passed Fwd filter:                       238  (0.0132746); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 3.47u 0.39s 00:00:03.86 Elapsed: 00:00:00.72
# Mc/sec: 2942.07
//
Query:       CCE31195.1  [L=336]
Description: related to quinone reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-30  105.3   0.1    3.6e-30  104.6   0.1    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    2.8e-09   38.1   0.0    5.3e-09   37.2   0.0    1.5  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    3.3e-05   23.7   0.0    0.00013   21.8   0.0    2.0  3  ADH_N         Alcohol dehydrogenase GroES-like domain
     0.0085   15.4   0.3      0.012   14.9   0.3    1.3  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.014   15.7   0.1      0.024   14.9   0.1    1.3  1  TrkA_N        TrkA-N domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.1   9.9e-34   3.6e-30       1     127 [.     153     278 ..     153     281 .. 0.92

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 9.9e-34
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTT.TSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltg.gegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeee 96 
                 gvGlaavq+Aka+Ga+via++s+++kle  +++Gad++++y ++ ++  ++k+lt  g+gvd+vf+ vG    ++ ++k+++ +Gr+ ++G+ g+  e+
  CCE31195.1 153 GVGLAAVQVAKAFGATVIATASTPRKLEVSRSFGADHALDY-TDpEWPTKVKKLTPkGRGVDIVFDPVG---LVDKSTKCTAWNGRILIIGFaGGAVEK 247
                 9****************************************.5559*********55************...********************6555555 PP

                 EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHH CS
  ADH_zinc_N  97 fdlrnlllkeksilGsllgslreefkealdl 127
                 + ++++llk++s++G+++g ++   kea+++
  CCE31195.1 248 VAMNKVLLKNISLVGIHWGAYSIHEKEAIPV 278
                 ********************87777777776 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.5e-12   5.3e-09       2     133 .]     186     326 ..     185     326 .. 0.72

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.5e-12
                   T-SEEEETTSTTHH......HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.....S-EEE-CHHHCTTT-EEEE--GGG...-..- CS
  ADH_zinc_N_2   2 GAdevidyrtedfe......aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpp....lsaallkpakkrkgrsvkyeflfsmkas.aq 86 
                   GAd+++dy+++++       +  +g+gvD+v+d vg   l+++s k+ + +Gr++ ig +      ++ +   + k+ +  ++++  +  ++++ a 
    CCE31195.1 186 GADHALDYTDPEWPtkvkklTP-KGRGVDIVFDPVG---LVDKSTKCTAWNGRILIIGfAGGavekVAMNKVLL-KNISLVGIHWGAYS-IHEKeAI 276
                   9********9999889976333.469**********...558899999888***99994433444422222222.22345555555555.4544533 PP

                   HHHHHHHHHHHHHHH----..EEEE.EEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  87 adileelaalieeGklrpv..vdrv.fpleeaaeAhrylesgrarGKiVl 133
                     + + +++l++eGk r +   d++  +l+++++A+ +l  + + GK+++
    CCE31195.1 277 PVVWDGITKLVKEGKMRGTefTDEEfVGLHRVKDALVALSGRGTWGKVIV 326
                   3346************965236788789********************98 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.8e-08   0.00013       2      70 ..      29     100 ..      28     123 .. 0.84
   2 ?   -2.9   0.0       1.8   6.3e+03      52      64 ..     138     150 ..     130     154 .. 0.76
   3 ?   -2.9   0.0       1.8   6.3e+03      83     103 ..     232     252 ..     223     256 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.8e-08
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS..--TT-EEEE-SEEE.-SSS CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk..lkvGdrVvveplis.cgeC 70 
                 +e li+++aa+ +  D+  + g+ +++ ++p i G E++G+v ++ ++  +  +++G rV+   + +   +C
  CCE31195.1  29 DEYLIDIHAAATNFFDVLQIAGKYQSQPPFPWIAGAEFAGIVLSTPKGSVNpkFSKGARVFGASQGAyATKC 100
                 7889***************************************98766655569******985544434444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
                 S--TT-EEEE-SE CS
       ADH_N  52 klkvGdrVvvepl 64 
                 ++k+Gd V+v+++
  CCE31195.1 138 HIKKGDYVLVHAA 150
                 5889999998765 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.8
                 TBEETTTSS-SSSBSEEEECG CS
       ADH_N  83 eakllgvsldGgfaeyvvvpe 103
                 ++++l +++ Gg  e+v +++
  CCE31195.1 232 NGRILIIGFAGGAVEKVAMNK 252
                 567777788899999888765 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   3.4e-06     0.012      35      73 ..     150     188 ..     117     252 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.4e-06
                  STSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTC CS
  AlaDh_PNT_C  35 GgGvaGlqAiatakglgakVtvlDvrparleqleslgak 73 
                   +G +Gl+A+++ak++ga+V ++   p++le  +s+ga 
   CCE31195.1 150 AAGGVGLAAVQVAKAFGATVIATASTPRKLEVSRSFGAD 188
                  4799***************************99999987 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   6.8e-06     0.024      51     113 ..     130     190 ..     115     192 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.8e-06
                 SHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESSGGGHHHHHHHTTSEE CS
      TrkA_N  51 deevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqdpehaellkklgadvv 113
                   +++++a+i+k d+v++ +    + ++av++ak  ++ +++ia a++p + e+ ++ gad++
  CCE31195.1 130 YGALVARAHIKKGDYVLVHAAAGGVGLAAVQVAKA-FG-ATVIATASTPRKLEVSRSFGADHA 190
                 5567899***************************7.55.57********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2454.98
//
Query:       CCE31196.1  [L=176]
Description: probable ubiquitin-conjugating enzyme E2 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-31  108.7   0.0    2.1e-31  108.4   0.0    1.0  1  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   0.0   1.2e-35   2.1e-31       4     136 ..      17     161 ..      12     169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 108.4 bits;  conditional E-value: 1.2e-35
                 HHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTS.TTTTEEEEEEEE--TTTTTS--EEEESST-.SCTTBETTSBB-CGGGS............T CS
      UQ_con   4 kelkelakkkpsgisaklvddenlfewkvlikgpedt.pYeggvFklelefpedYPlkpPkvkfvtki.fHPnvdksGevcldiLk............e 88 
                 ke++  a+k  +g+s +lv+d+n+ ew+v+++  +d+ +Y gg F+++l fp +YPl pP+++f t+i fHPn++++G++c++iL+            +
  CCE31196.1  17 KEIR--ASKDLQGVSCGLVHDSNMLEWEVMLMISDDCkYYGGGNFRARLVFPMTYPLMPPTLTFLTPIpFHPNIYADGTLCISILHppeedefgyecaS 113
                 4444..367889*********************9998256789**********************98759*************************9998 PP

                 TT--TTSHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHH CS
      UQ_con  89 ekWspaltlesvllsiqsLlaepnpesplnkeaakllkkdreeykkkv 136
                 e+Wsp+++ e++l+s +sL+++ n+es++n+eaa+l+++++e  +k+ 
  CCE31196.1 114 ERWSPVQSPETILVSTISLFHDFNDESAANVEAARLFREENEGMHKEF 161
                 88***********************************99865444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1399.69
//
Query:       CCE31197.1  [L=478]
Description: related to beta-1,4-mannosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00014   22.3   0.0    0.00028   21.3   0.0    1.5  1  Glyco_trans_1_4  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.025   15.0   0.0      0.053   13.9   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.2e-08   0.00028      35     132 ..     327     438 ..     314     440 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.2e-08
                      EEES---...HHHHHHHT......T-T.TEEEE---...THHHHHHHH-SEEEE--...-..--SHHHHHHHHTT-EEEE-TGG.GTTT--..T CS
  Glyco_trans_1_4  35 vivGdgp.rpeeleelaa......gleerveftGfv...edlaellaaadvfvaPs...e..gfglkllEamaaglpvVatdvg.giaevv..g 110
                      +i G+gp +++ l+ l++      +l ++++++       d a lla ad+ +          +++k+++++ aglpv a ++   + e+v  g
       CCE31197.1 327 IITGKGPdKAKYLD-LIQqiqdqgRL-PGIKVLTAWlsnRDYATLLACADLGISLHkssSgvDLPMKVVDMFGAGLPVAAYSAFeSFGELVkeG 418
                      79999997654443.44312244334.77777665558779***********997754433358*****************8854899*99999 PP

                      TSSEE--TT-HHHHHHHHHHHH CS
  Glyco_trans_1_4 111 engllvppgdpealaeailrLl 132
                      eng+ ++   +++l + ++rL+
       CCE31197.1 419 ENGCGFE--TAAQLMAIMQRLF 438
                      ****998..7888888887776 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.9e-06     0.053       8      88 ..     384     466 ..     375     469 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.9e-06
  Glyco_trans_1_2   8 s.espnlrlfEaaacGafaltdda.egleelftpgkevilfedleelaekiryllanpeerr.aiaeaarervlaehtydhrae 88 
                      s  ++ +++++  ++G ++ + +a e+++el+++g+ ++ fe+ ++l + +++l ++ ++ + a+ +++  r +  +++d+ ++
       CCE31197.1 384 SgVDLPMKVVDMFGAGLPVAAYSAfESFGELVKEGENGCGFETAAQLMAIMQRLFSEQGQDElAMLKKGAIR-EGSLRWDQEWD 466
                      3466889***********9999889****************************9997755333666666666.66777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3433.86
//
Query:       CCE31198.1  [L=237]
Description: uncharacterized protein CPUR_05049 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-09   35.5   0.5    1.4e-08   34.8   0.5    1.4  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
    8.8e-05   22.8   0.7    0.00014   22.1   0.7    1.4  1  zf-met       Zinc-finger of C2H2 type
     0.0011   19.0   1.5     0.0011   19.0   1.5    1.9  2  SNRNP27      U4/U6.U5 small nuclear ribonucleoproteins
     0.0015   18.6   0.2     0.0027   17.8   0.2    1.4  1  zf-DBF       DBF zinc finger
  ------ inclusion threshold ------
      0.014   15.8   0.6      0.024   15.1   0.6    1.4  1  zf-C2H2      Zinc finger, C2H2 type
      0.056   12.6   0.3      0.082   12.1   0.3    1.2  1  Actin_micro  Putative actin-like family
      0.091   13.6   0.2       0.17   12.8   0.2    1.4  1  zf-C2H2_4    C2H2-type zinc finger
       0.25   12.0   1.3       0.57   10.9   1.3    1.6  1  FOXP-CC      FOXP coiled-coil domain


Domain annotation for each model (and alignments):
>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.5   6.2e-12   1.4e-08       2      26 ..     101     125 ..     100     126 .. 0.97

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 6.2e-12
                  CBBTTTTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSKkH 26 
                  fYC++Cd +Fk+ +++ +H+++ +H
   CCE31198.1 101 FYCEACDLTFKDNKQFLEHINTTQH 125
                  9************************ PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.7   6.4e-08   0.00014       1      25 []     101     125 ..     101     125 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 6.4e-08
      zf-met   1 fyCelCnvtfnsesqlksHlqGKkH 25 
                 fyCe+C+ tf++ +q+  H +  +H
  CCE31198.1 101 FYCEACDLTFKDNKQFLEHINTTQH 125
                 8******************996655 PP

>> SNRNP27  U4/U6.U5 small nuclear ribonucleoproteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4       3.6     8e+03      26      40 ..      32      46 ..      28      47 .. 0.73
   2 !   19.0   1.5   4.9e-07    0.0011       2      20 ..     219     237 .]     218     237 .] 0.93

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.6
     SNRNP27 26 nnegavkkkkkrkyR 40
                +ne  +k k++rk R
  CCE31198.1 32 ANEREAKEKEERKAR 46
                566778888888887 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 4.9e-07
     SNRNP27   2 eeeemmklmGfggFdtTkg 20 
                 +ee+mm+ mGf+gF+t+k+
  CCE31198.1 219 DEEDMMAQMGFTGFGTSKK 237
                 89***************95 PP

>> zf-DBF  DBF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   1.2e-06    0.0027       4      26 ..     101     126 ..      98     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.2e-06
      zf-DBF   4 GYCEnCrvkfedle...eHlksekHr 26 
                  YCE C+ +f+d +   eH+++ +H 
  CCE31198.1 101 FYCEACDLTFKDNKqflEHINTTQHL 126
                 7*********98554449*******5 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.6     1e-05     0.024       1      23 []     101     125 ..     101     125 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1e-05
                 EEETTTTEEESSHHHHHHHHHC..C CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt..H 23 
                 ++C+ C+ +Fk++ ++  Hi+t  H
  CCE31198.1 101 FYCEACDLTFKDNKQFLEHINTtqH 125
                 89******************99666 PP

>> Actin_micro  Putative actin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   3.7e-05     0.082     225     291 ..     100     182 ..      95     230 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.7e-05
  Actin_micro 225 efsCkvCdvkfev.ekiseHllk.kHii............kehvkehiteyknkhkdviek..igkrlraklsklerlkkins 291
                   f C+ Cd  f+  +++ eH+ + +H+              ++v++ i ++  k +++ ++  i    r ++ + er k ++ 
   CCE31198.1 100 GFYCEACDLTFKDnKQFLEHINTtQHLLntgqtmevkratAQEVHDRIAQWVRKRDELAKEqaISLPERLQIREEEREKELEE 182
                  699********99899*****86267776666666666664444444444444444443320022222333444444444444 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   7.5e-05      0.17       1      22 [.     101     122 ..     101     123 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.5e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkt 22 
                 f+C+ C+ +F+++k++l H++t
  CCE31198.1 101 FYCEACDLTFKDNKQFLEHINT 122
                 89*****************975 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.3   0.00025      0.57      12      61 ..     106     157 ..     103     162 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00025
     FOXP-CC  12 Cekvledveeflkhlns.eHalddkstaql.rvqmqvvqqlekqlvkEkerL 61 
                 C+  ++d ++fl+h+n+ +H l+   t ++ r+  q v+    q v+ ++ L
  CCE31198.1 106 CDLTFKDNKQFLEHINTtQHLLNTGQTMEVkRATAQEVHDRIAQWVRKRDEL 157
                 999************9725666654444441666788887777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1852  (0.103296); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1748.44
//
Query:       CCE31199.1  [L=287]
Description: probable methyltransferase DPH5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-23   81.5   0.0    1.4e-22   80.7   0.0    1.4  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   7.7e-27   1.4e-22       1     213 []       1     237 [.       1     237 [. 0.74

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 7.7e-27
  TP_methylase   1 klylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeel.eleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygtg 96 
                   +lylVG+G+ d  ++Tv++l+++k+a  v+ ++  +++il  l+++ + e ++    +   +++++ e ++  + ++++ +dV++ v GDP+ ++t+
    CCE31199.1   1 MLYLVGLGLSDETDITVKGLEVVKNASRVYLEA--YTSIL--LVDQSVlENYYGRSIT--IADREMVESNSDEILRNAQNEDVAFCVVGDPFGATTH 91 
                   79***************************9888..77777..4555434344444333..4444444444444888888889*************** PP

  TP_methylase  97 selvealrareagieveviPGvsslqaaaarlgiplteggevlsvl.lpglakeeereleallan....gdtlvll..................kap 170
                     lv  +rare  i+v+++P  s+++ + a+  +  + g++v++v+ +   ++++++ ++++ +n     +tlvl+                  +  
    CCE31199.1  92 TDLV--IRARELSIPVRTVPNASIMSGIGACGLQLYNFGQTVSMVFfT--DSWKPASFYDRIKENraigLHTLVLVdikvkeqslenmargrliY-- 182
                   ****..77777*******************999999999999999954..45569999999999999999******5555555554444444441.. PP

  TP_methylase 171 rklaelaelL.....................kealyddttpvavveragtedervvrgtleela 213
                                                  +e  y ++  ++ ++r+g + e+ v gtleel+
    CCE31199.1 183 ---------EpprymtvgqcaqqmleieedkQEGAYTRNSLAIGAARVGGKTEKFVSGTLEELC 237
                   .........0333333333333334444442666777788999999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2034.67
//
Query:       CCE31200.1  [L=502]
Description: uncharacterized protein CPUR_05051 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.069   13.2   1.1       0.17   11.9   1.1    1.6  1  RXT2_N          RXT2-like, N-terminal
       0.18   11.5   7.1       0.36   10.5   7.1    1.4  1  Cwf_Cwc_15      Cwf15/Cwc15 cell cycle control protein
       0.34   11.3   8.6        1.1    9.7   8.6    1.8  1  PBP1_TM         Transmembrane domain of transglycosylase PBP1
        1.2    8.4   7.6        1.9    7.8   7.6    1.2  1  NOA36           NOA36 protein
        2.7    8.4  12.4        6.1    7.3  12.4    1.5  1  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.1   4.7e-05      0.17      35      80 ..     331     388 ..     317     399 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.7e-05
      RXT2_N  35 ngserkilsrnpierskrkk............kekekeekeeeeedeegdeededddd 80 
                 +gs  +i +++++++ + +k            ++   +++++++ed+++d++d+dddd
  CCE31200.1 331 DGSATYIAQKKQLQNLTGRKwcarvvrasdrkDRAGAHSDSNDDEDDDDDDYDDDDDD 388
                 6777777777777776666688888877653212222222223333333333333332 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   7.1    0.0001      0.36     112     145 ..     360     389 ..     329     395 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
                 ---------------------------------- CS
  Cwf_Cwc_15 112 daddedseeeeeeeeeesdddsdsdsdddddede 145
                 d   +++ +  +++++++d+d+d+d+ dddd+de
  CCE31200.1 360 D---RKD-RAGAHSDSNDDEDDDDDDYDDDDDDE 389
                 2...222.22222223333333333333333443 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   8.6    0.0003       1.1      18      56 ..     353     392 ..     345     400 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0003
     PBP1_TM  18 akparkkasrrrrr.dddyddeyddeedDdddddeeeevp 56 
                 a+  r+  ++ r     d +d+ dd+ dD+dddd++e ++
  CCE31200.1 353 ARVVRASDRKDRAGaHSDSNDDEDDDDDDYDDDDDDEFIS 392
                 3444444444443344444555677778888888887665 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.6   0.00052       1.9     265     295 ..     358     389 ..     332     392 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00052
       NOA36 265 sgddeddegd.edddddddeedddeeeddede 295
                 ++d++d  g+ +d +dd+d++ddd+++dd+de
  CCE31200.1 358 ASDRKDRAGAhSDSNDDEDDDDDDYDDDDDDE 389
                 33444444440444455555555555554443 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  12.4    0.0017       6.1       9      36 ..     366     389 ..     355     395 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0017
  CENP-B_dimeris   9 gedsesesdeeeeeeeedeededeedde 36 
                     g  s+s+    ++e+++d++ +d++dde
      CCE31200.1 366 GAHSDSN----DDEDDDDDDYDDDDDDE 389
                     3333333....33333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3589.68
//
Query:       CCE31201.1  [L=465]
Description: uncharacterized protein CPUR_05052 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        4.1    7.4   6.7       0.48   10.4   0.1    3.0  3  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.14   2.5e+03      26      32 ..       2       8 ..       1       9 [. 0.83
   2 ?   10.4   0.1   2.7e-05      0.48       3      19 ..      86     102 ..      85     154 .. 0.52
   3 ?   -3.9   0.7      0.78   1.4e+04      27      33 ..     349     355 ..     345     359 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.14
  F-box-like 26 lVCrrWr 32
                +++rrW+
  CCE31201.1  2 ATSRRWA 8 
                89****7 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 2.7e-05
  F-box-like   3 rLPdEiLlqIFsyLpps 19 
                 rLP E++l+I+ y+ +s
  CCE31201.1  86 RLPVEVILRILKYVTQS 102
                 8**********775333 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 0.78
  F-box-like  27 VCrrWrr 33 
                  C +W+ 
  CCE31201.1 349 SCTKWCA 355
                 5999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3323.04
//
Query:       CCE31202.1  [L=1083]
Description: probable GPI-anchor transamidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-39  136.1   0.2    2.2e-39  135.5   0.2    1.2  1  Peptidase_C13  Peptidase C13 family
    3.2e-20   72.8   0.0    1.2e-19   71.0   0.0    2.0  1  TFIIIC_delta   Transcription factor IIIC subunit delta N-term
    1.6e-11   44.1   1.7    3.2e-11   43.1   1.7    1.5  1  zf-TFIIIC      Putative zinc-finger of transcription factor I
  ------ inclusion threshold ------
      0.059   13.5   4.6       0.37   10.9   0.9    2.7  2  DUF678         Protein of unknown function (DUF678)


Domain annotation for each model (and alignments):
>> Peptidase_C13  Peptidase C13 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.5   0.2   4.9e-43   2.2e-39       1     226 [.      32     262 ..      32     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: 135.5 bits;  conditional E-value: 4.9e-43
                    EEEEEEE---SGGGHHHHHHHHHHHHHHHCTT--GGGEEEEE---STT-TT-SSTT--BSSTT.--B-STT.--ESBEGGG-SHHHHHHHHH...T CS
  Peptidase_C13   1 lyavlvAGsngydnyrhqadvchayqllkkkglkdenivvvmydDiaereenPlagkiinkpk.gedvykg.vkidYtgkkvtkenflavll...G 91 
                    ++avlv+ s+ + nyrh a+v  +y+++k+ g++d +i+++  dD+a +++n ++g+++++ +   d+y   +++dY+g +vt enf+  l+   G
     CCE31202.1  32 NWAVLVCTSRFWFNYRHLANVLSIYRTVKRLGIPDSQIILMLPDDMACNPRNAFPGTVYSNSDrAVDLYGDnIEVDYRGYEVTVENFIRLLTdrvG 127
                    6**********************************************************88873589996659******************84446 PP

                    -TCGTT-------TTSEEEEEEES-EETTEEE-SSSSEEEHHHHHHHHHHHHHCT--SEEEEEEESTTGGGGTTTS-TTSSEEEEESS-TTS--BE CS
  Peptidase_C13  92 dksvgsgkvlksgkeDnvfiyltdhGapgvlevpeeddleakdLaeaLkkmhakkkykklviyleaceSgsmfeellkdinvyaltAanadessfg 187
                    d+   s+++l+++   n+++y+t hG++++l++ + +++   dLa+a+++m +kk+y+++++++++c++  m +  l + n++a+ +++ d+ss++
     CCE31202.1 128 DEMPRSKRLLTDE-RSNILVYMTGHGGNEFLKFQDAEEIGSFDLADAFQQMWEKKRYHEILFMIDTCQANTMYSR-LYSPNIIATGSSELDQSSYS 221
                    6644677777665.569**********************************************************.99****************** PP

                    ECE.CTTTTCEEEEHHHHHHHHHHHH..S-.TTT-BHHHHHH CS
  Peptidase_C13 188 tycedeedgtylgdlfsvawledsdd..ed.lsketlekqfe 226
                        d++ g    d + +  le  ++  +d +s++t+ + f+
     CCE31202.1 222 HHA-DNDVGVAVIDRYTYYNLEFLENqvKDlTSRKTVGELFD 262
                    *76.88888888888888777766652223134567777665 PP

>> TFIIIC_delta  Transcription factor IIIC subunit delta N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   2.7e-23   1.2e-19       2     139 ..     395     556 ..     394     593 .. 0.80

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 2.7e-23
  TFIIIC_delta   2 pstldalaWSeDgqlavatgesiyiLepklplqklklnrsgiqaseatkqavklranvfsededpnwsqaseenysigeeqsslisldtkinaq... 95 
                   p  ++a+aWS+D++la+at ++i+i+ p++p+     +                      +++d+  ++a++ ++s++  +s+ +++d++in     
    CCE31202.1 395 PIAPRAIAWSCDAELAIATTDTIHIFLPEYPR----PS---------------------RSSDDAPDEDAFRPQFSLTLTASGILRPDPAINGPlca 466
                   56789***************************....11.....................234555567889999********9999*9999999999 PP

  TFIIIC_delta  96 ................................sqvvaaaWSPlgLsknrrClLavLtttgeL.............siyeasg.nkekssW 139
                                                   sq   ++WSP+gL++n r++L++Ltt+g +              +++++  ++++++W
    CCE31202.1 467 fagvilphaesnesfvfrgvgtgeatrcgsslSQSLGVEWSPNGLGRNLRPVLTILTTSGSIvamgehidghgsrPVMTSTLrSRTFKNW 556
                   99************************************************************6666666666666333322225556666 PP

>> zf-TFIIIC  Putative zinc-finger of transcription factor IIIC complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   1.7   7.2e-15   3.2e-11      11     100 ..     996    1080 ..     984    1081 .. 0.79

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 7.2e-15
   zf-TFIIIC   11 kesCdicdagipleslteaqckeGHvfsRCaltflaiqepkiskvCilcstevldeelveaqelikeeseksllriLleavdtciycggk 100 
                  k++C +cda +     +e+ c+ GH+f+ Ca t lai++p+is+ C++c+ ++l+ + +++    ++ s +++++ L ea+     cggk
  CCE31202.1  996 KQTCVFCDARLVAF-GNESICERGHSFATCAATGLAILAPGISRICSVCDLRCLNISELSRIA-AQHISPEAVVESLGEACGG---CGGK 1080
                  78999999987544.47889**********************************988876664.4455677888888877665...4555 PP

>> DUF678  Protein of unknown function (DUF678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.021        94      26      39 ..     997    1010 ..     987    1033 .. 0.84
   2 ?   10.9   0.9   8.3e-05      0.37      27      66 ..    1039    1079 ..    1025    1083 .] 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.021
      DUF678   26 tTCSlCqSkLvkvs 39  
                   TC  C+ +Lv + 
  CCE31202.1  997 QTCVFCDARLVAFG 1010
                  59*********996 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 8.3e-05
      DUF678   27 TCSlCqSkLvkvsdvskvslsklkva.vgkgntlrCaACgS 66  
                   CS+C+ + + +s++s++ ++++ +  v ++   +C  Cg 
  CCE31202.1 1039 ICSVCDLRCLNISELSRIAAQHISPEaVVESLGEACGGCGG 1079
                  6**********************998566666678888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1083 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.98
# Mc/sec: 3342.41
//
Query:       CCE31203.1  [L=468]
Description: uncharacterized protein CPUR_05054 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00015   21.6   0.1    0.00024   20.9   0.1    1.3  1  SH3_9     Variant SH3 domain
     0.0081   15.8   0.0      0.016   14.8   0.0    1.4  1  SH3_1     SH3 domain
  ------ inclusion threshold ------
      0.056   12.9   0.3       0.14   11.6   0.3    1.7  1  SKG6      Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   3.9e-08   0.00024       4      31 ..     409     436 ..     406     438 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.9e-08
       SH3_9   4 pyepreddeLsLqrGDvitvieesedgW 31 
                 +++p  dde+++ +G+ +++++e++dgW
  CCE31203.1 409 DFKPALDDEMEMKAGELVRLLHEYDDGW 436
                 8*************************** PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.6e-06     0.016       2      32 ..     406     436 ..     405     440 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.6e-06
                 ESSSBEXSSTTBXEBSTTEEEEEEEECSSSE CS
       SH3_1   2 AlYDYeaeesdELsfkkGDviivleksedgW 32 
                 +  D+++  +dE+ +k G+ + +l++ +dgW
  CCE31203.1 406 VQLDFKPALDDEMEMKAGELVRLLHEYDDGW 436
                 678**************************** PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   2.4e-05      0.14       3      38 .]     168     205 ..     166     205 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
        SKG6   3 dssnsntvaIavaVaVPV..aViiivLlailifvrRRk 38 
                 ds+n n++   +++a +V  +V i+ L+a+l+f+rRR+
  CCE31203.1 168 DSGNANSAGAKAGIAFGVigGVFIVGLVAFLLFIRRRR 205
                 56666666666677777644799999***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3223.49
//
Query:       CCE31204.1  [L=465]
Description: probable AFG1-ATPase family gene [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-95  318.3   0.0    1.5e-90  303.7   0.0    2.1  2  AFG1_ATPase  AFG1-like ATPase
    3.7e-05   24.2   0.0      0.027   14.9   0.0    3.0  3  AAA_16       AAA ATPase domain
    0.00011   22.1   0.0       0.54   10.0   0.0    2.6  2  Bac_DnaA     Bacterial dnaA  protein
     0.0033   17.5   0.0     0.0074   16.3   0.0    1.5  1  AAA_14       AAA domain
     0.0081   16.4   0.0      0.028   14.7   0.0    2.0  1  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.031   14.3   0.0    1.8  2  AAA_5        AAA domain (dynein-related subfamily)
       0.11   12.4   0.0       0.25   11.3   0.0    1.8  1  NACHT        NACHT domain
       0.14   12.2   0.0       0.26   11.3   0.0    1.4  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
       0.16   12.4   0.0       0.42   11.0   0.0    1.7  1  AAA          ATPase family associated with various cellular a


Domain annotation for each model (and alignments):
>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.7   0.0   7.7e-94   1.5e-90      60     338 ..      72     360 ..      15     370 .. 0.92
   2 !   12.7   0.1   2.2e-05     0.044     331     361 ..     407     437 ..     396     438 .. 0.88

  Alignments for each domain:
  == domain 1  score: 303.7 bits;  conditional E-value: 7.7e-94
  AFG1_ATPase  60 epvrglYlwGgvGrGKtylmdlffeslp..vekkrrvhfhafmarvhdeltklr....kekdplaivadrlaeearvlCfDEfevsDiadamllsrLl 151
                  + +rglYl+G vG GKt+lmdlf++ lp  v++k r+hfh+fm++vh++l+kl+      +d+++ va  +ae  +vlCfDEf+ +D+adam+l rLl
   CCE31204.1  72 NLPRGLYLYGDVGSGKTMLMDLFYDTLPpsVQTKTRIHFHNFMQDVHKRLHKLKmehgTDVDAVPFVAADIAERGNVLCFDEFQCTDVADAMILRRLL 169
                  458************************97789**********************9988889************************************* PP

  AFG1_ATPase 152 eaLfargvtlvaTSNiaPedLykdglqrqrFLpaIdlleshlevlevdggvDYRlrklrqaevylapldeaaeaaldklfkelts....gepeaestl 245
                  e L+  gv+lv+TSN+ P+dLyk+g+qr+ F+paI+ll+s+l+v+++d++ DYR    ++  vy++pld++a+++ +k f+ l +    +++ +++t 
   CCE31204.1 170 ECLMSHGVVLVTTSNRQPDDLYKNGIQRESFIPAIQLLKSRLHVINLDSPIDYRKIPRPPSGVYHTPLDSHANSHAEKWFRFLGDseddPAAPRSETQ 267
                  ***********************************************************************************995555555677899 PP

  AFG1_ATPase 246 evkaRklrvraaagdlvrfsfaelceaarsqsdYlalaerfhtvlledVpvltkakedaarRfiaLvDelYdadvklvvsaevaleelyeagr 338
                  +v +R + v+++ g  ++f+f el  +++s+ dYl+l + + +++++dVp++t  ++d arRfi+ +D++Y+ ++klv+  e++l+el++  +
   CCE31204.1 268 RVWGRDIYVPRVSGRCAWFTFDELIRQPKSAADYLELVRAYDAFIVSDVPGMTIQERDLARRFITFIDAVYEGNAKLVLTTEKPLTELFVSRD 360
                  9***************************************************************************************98765 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.2e-05
  AFG1_ATPase 331 eelyeagrlefefeRtaSRLlelqsedylar 361
                  ++l+ +++ +f f R++SRL +++s ++++r
   CCE31204.1 407 TNLFAGEEEAFAFARALSRLKHMESREWVER 437
                  678899999*******************998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.3e-05     0.027      17      63 ..      67     109 ..      60     134 .. 0.76
   2 ?    5.5   0.1      0.01        20     134     169 ..     144     179 ..     136     180 .. 0.79
   3 ?   -1.7   0.0       1.7   3.3e+03     106     139 ..     309     346 ..     244     350 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-05
      AAA_16  17 ervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 +++ ++ p+ ++l+G+ G+GK+ l++ +++ l  +    +++k++ +
  CCE31204.1  67 GDIPENLPRGLYLYGDVGSGKTMLMDLFYDTLPPS----VQTKTRIH 109
                 5666777899********************99999....44444433 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.01
      AAA_16 134 erplvlvlDdlqwadeaslqllaaLlrlleskpllv 169
                 er  vl++D++q  d a++++l+ Ll+ l s+ +++
  CCE31204.1 144 ERGNVLCFDEFQCTDVADAMILRRLLECLMSHGVVL 179
                 34459********************99877766555 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.7
      AAA_16 106 a..avpelagaea..srllellkrll.allsrderplvl 139
                    +v++++g     ++l++ +  ++ a ++ +++ lvl
  CCE31204.1 309 DafIVSDVPGMTIqeRDLARRFITFIdAVYEGNAK-LVL 346
                 13334444444444466777777777555555444.666 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00054       1.1      21      87 ..      61     125 ..      57     193 .. 0.68
   2 !   10.0   0.0   0.00027      0.54      83     144 ..     292     355 ..     279     368 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00054
                 HHHHHHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHS.SSS-EEEEEHHHHHHHHHHHHHTT- CS
    Bac_DnaA  21 aaalkvaeapgkkynPlfiygevGlGktHLlkaignevlena.pelrvvYltaeeFlnelvkalrdkk 87 
                 aa  +v + p++    l++yg+vG Gkt L++    ++  +   ++r   ++  +F++++ k l++ k
  CCE31204.1  61 AAKPAVGDIPENLPRGLYLYGDVGSGKTMLMDLFYDTLPPSVqTKTR---IHFHNFMQDVHKRLHKLK 125
                 55566777788877889*************98766555433303333...445667777666666544 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00027
                 HHT.T-HHHHHHHHTT-SEEEEE-GGGGTT-HH.HHHHHHHHHHHHHTTT-EEEEEESS-TTT- CS
    Bac_DnaA  83 lrd.kkaeefkeklrkvDvLliDDiqflagkek.tqeelfhtfnalleegkqvvlssDrsPkel 144
                 +r+ k+a+++ e +r+ D+ ++ D+  ++ +e+     +++ ++a++e + ++vl+++++ +el
  CCE31204.1 292 IRQpKSAADYLELVRAYDAFIVSDVPGMTIQERdLARRFITFIDAVYEGNAKLVLTTEKPLTEL 355
                 5554678889999************988766542788999999**************9987776 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.7e-06    0.0074      12     102 ..      84     185 ..      75     193 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.7e-06
      AAA_14  12 rvGKTtllkqlikell...vkkesilyinldderdkkladpe.......kllelileklkeekktylflDEiqevpewekal.kslvdeg.knldvivt 98 
                  +GKT+l+  ++++l     +k +i + n+ ++  k+l + +       +   ++ + + e + ++l++DE q  + +  ++ ++l++   +++ v+vt
  CCE31204.1  84 GSGKTMLMDLFYDTLPpsvQTKTRIHFHNFMQDVHKRLHKLKmehgtdvDAVPFVAADIAE-RGNVLCFDEFQCTDVADAMIlRRLLECLmSHGVVLVT 181
                 79*****988887777**8788999999999987766554443455544444555555555.99*********99988776515555522456788888 PP

      AAA_14  99 GSns 102
                  Sn 
  CCE31204.1 182 TSNR 185
                 8875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.4e-05     0.028       8     103 ..      77     157 ..      73     185 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhl 103
                 l+++G +G+GKT+l+  + ++l         +p+v + t  +     ++++++ + l+  + +  ++  + +  ++  + +r+   +l  DE+q  
  CCE31204.1  77 LYLYGDVGSGKTMLMDLFYDTL---------PPSVQTKTRIHFH---NFMQDVHKRLHKLKME-HGTDVDAVPFVAADIAERGN--VLCFDEFQCT 157
                 79*******************9.........4443322222222...2333333333322222.44455555556666666655..6666666655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.6e-05     0.031       2      89 ..      77     169 ..      76     197 .. 0.71
   2 ?   -3.4   0.0       4.6   9.2e+03      86     124 ..     217     259 ..     213     266 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--.............--------G-SEEEEESGGG--HHHHHHHHHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreik....ngttslvdsplvraaregeilvlDEveraesevlnsLlsll 89 
                 + L G+ G+gK++l++ +   l    ++ + + ++ ++  +d+  r++      + +   v+ ++ + a++g +l++DE++  + + +++L +ll
  CCE31204.1  77 LYLYGDVGSGKTMLMDLFYDTLppsVQTKTRIHFHNFM--QDVHKRLHKLkmehGTDVDAVPFVAADIAERGNVLCFDEFQCTDVADAMILRRLL 169
                 679*******************7664445555666666..455555552245233344455555555566**********966555555665555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.6
                 HHHHHSSEEE..-SSSEEE---...........-EEEEEESS-- CS
       AAA_5  86 lslleerrllleeggelvkaknddller.....frviatanpld 124
                  s+++ r+++ +++g +      ++++      fr+++ +++ +
  CCE31204.1 217 DSPIDYRKIPRPPSGVYHTPLD-SHANShaekwFRFLGDSEDDP 259
                 5667777777666553332222.112222444788888777765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.25       3      43 ..      77     115 ..      75     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslr 43 
                 + l G+ GsGKT+L+  + +++  + + +   +  F+ +++
  CCE31204.1  77 LYLYGDVGSGKTMLMDLFYDTLPPSVQTKT--RIHFHNFMQ 115
                 5689************99999988887774..566655555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.26      20      43 ..      75      98 ..      53     129 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                EEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE 20 dvilLeGdLGaGKTtlvrglakal 43
                + ++L+Gd+G+GKT+l+  +  +l
  CCE31204.1 75 RGLYLYGDVGSGKTMLMDLFYDTL 98
                3499************98887766 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.42       1     117 [.      77     192 ..      77     203 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
                 EEEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel..........gvefleisgsellskyvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnq 88 
                 ++lyG  G GKT+l+     +l          +++ +  ++++ l k+  e   ++ ++   a   a +  +l +DE+     ++           +  
  CCE31204.1  77 LYLYGDVGSGKTMLMDLFYDTLppsvqtktriHFHNFMQDVHKRLHKLKMEHGTDVDAVPFVAADIAeRGNVLCFDEFQCTDVAD-----------AMI 164
                 58*******************8555444332234445556666666677777777777766665555444999999999887777...........666 PP

                 HHHHHHHTTTSSSTEEEEEEESS.GGGSTH CS
         AAA  89 Llteldgvkkkeskvivigatnr.pdkldp 117
                 L + l+ + +  + v++++++nr pd+l +
  CCE31204.1 165 LRRLLECLMS--HGVVLVTTSNRqPDDLYK 192
                 6666666666..358888888887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3259.14
//
Query:       CCE31205.1  [L=228]
Description: uncharacterized protein CPUR_05056 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0037   17.4   0.1      0.015   15.4   0.0    1.9  2  Cupredoxin_1  Cupredoxin-like domain
     0.0041   17.6   0.1     0.0075   16.8   0.1    1.3  1  DUF4473       Domain of unknown function (DUF4473)
  ------ inclusion threshold ------
      0.037   14.0   0.0       0.24   11.5   0.0    2.0  2  Cu_bind_like  Plastocyanin-like domain


Domain annotation for each model (and alignments):
>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.5e-06     0.015      14      51 ..      13      51 ..       4      58 .. 0.81
   2 ?   -1.2   0.0      0.37   2.2e+03      85      93 ..      58      66 ..      54      70 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.5e-06
  Cupredoxin_1 14 kaaaaaektveitvk.dggfePskievkagekvklkikn 51
                   aa+aa++ ++it++ d +f+P+++++kag  ++++++ 
    CCE31205.1 13 LAASAAADIIKITATaDSAFNPNSVTAKAGDVLEFHFQS 51
                  4567889999999975789****************9986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.37
  Cupredoxin_1 85 pGeYeftcd 93
                  +G Y+f+c 
    CCE31205.1 58 AGDYHFACS 66
                  79*****95 PP

>> DUF4473  Domain of unknown function (DUF4473)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.2e-06    0.0075       7      46 ..       4      43 ..       2      57 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.2e-06
     DUF4473  7 akaeLvaaGlsekaadglvkiaekfksefakakgdkeaak 46
                +k+ L aaGl   aa+ ++ki++++ s f  ++  ++a++
  CCE31205.1  4 IKTYLAAAGLAASAAADIIKITATADSAFNPNSVTAKAGD 43
                7889*************************99977777776 PP

>> Cu_bind_like  Plastocyanin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.9e-05      0.24      14      38 ..      35      59 ..      25      67 .. 0.87
   2 ?   -0.0   0.0      0.15   9.2e+02      62      84 .]      92     114 ..      80     114 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.9e-05
  Cu_bind_like 14 esktFrvGDtLlFkydsevhsvvev 38
                  +s t + GD+L+F+++s  hsvv  
    CCE31205.1 35 NSVTAKAGDVLEFHFQSGNHSVVAG 59
                  5677899***************976 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.15
  Cu_bind_like  62 vtLtkegsnyFisgvpghCkkGq 84 
                   v L++e    F s+  ++C+ G+
    CCE31205.1  92 VGLANEEPLVFYSSHADDCSRGM 114
                   67777888889999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1840.66
//
Query:       CCE31206.1  [L=430]
Description: probable phosphoprotein phosphatase X-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-32  114.3   0.1    4.5e-22   79.5   0.0    2.1  2  Metallophos  Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
        0.2   12.1   0.2       0.41   11.1   0.2    1.5  1  STPPase_N    Serine-threonine protein phosphatase N-terminal 


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0   5.1e-26   4.5e-22       2     114 ..      45     156 ..      44     205 .. 0.87
   2 !   33.0   0.0   9.1e-12   8.2e-08     111     201 ..     243     326 ..     206     329 .. 0.87

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 5.1e-26
                  EEEEEESBTBTTCCTHHHHHHHHHHHH..HHHTTESEEEEESTSSSSS..HHHHHHHHHHHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl..lreekpdlvllaGDlvdrg..dlekellellaalvkypipvylllGNHe........gfeeellnkygy 87 
                  +++++gD+H     gq++dl++l++     ++  ++l++  GD+vdrg  +le+ +l lla +v+yp+++ l++GNHe        gf++e+l+kyg+
   CCE31206.1  45 PVTICGDIH-----GQFHDLMELFRVGgdVPD-TNYLFM--GDFVDRGfySLES-FLLLLALKVRYPDRITLIRGNHEsrqittvyGFYDECLRKYGS 133
                  799******.....**********77744344.678888..*************.99999*************************************8 PP

                  HHHHHHHHEHHHCEEETSEEEEEETTE CS
  Metallophos  88 lgifsepwrsdaevfnnlplaslgsgs 114
                      + +wr++++vf++l l +++ g 
   CCE31206.1 134 ----ASVWRHCCDVFDYLALGAIVLGA 156
                  ....99****************99884 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 9.1e-12
                  ETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTTESEEEEESS CS
  Metallophos 111 gsgslkvlllhGgspellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgdealedllkkygvdlvisGHt 201
                   +g   vl++hGg  +l++++dk++ +++ +e+p++g   d++++d        ++ ++g+   +rg+g lfg + ++++  k+++ l+ ++H+
   CCE31206.1 243 PTG--AVLCVHGGLSPLIDTVDKIRLIDRKQEVPHEGamcDLLWSD--------PDDIIGWGLSPRGAGFLFGADIVREFNHKNDLSLIARAHQ 326
                  333..79******55557****************************........***************************************7 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   4.6e-05      0.41      22      41 ..      17      36 ..       5      38 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.6e-05
   STPPase_N 22 LseaEIrqlCakareiFLsQ 41
                + e+++r lC++are+++++
  CCE31206.1 17 IPESQVRELCHRARELLIEE 36
                679*************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3265.37
//
Query:       CCE31207.1  [L=122]
Description: uncharacterized protein CPUR_05058 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00027   20.9   0.0    0.00051   20.1   0.0    1.4  1  COA2      Cytochrome C oxidase assembly factor 2


Domain annotation for each model (and alignments):
>> COA2  Cytochrome C oxidase assembly factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.8e-08   0.00051      10      48 ..       8      46 ..       5      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.8e-08
        COA2 10 krklvnllfgttaliatatviipsllPCPamknpyldtd 48
                + ++   lf tt+  ++  v++p llPCP  +  y d +
  CCE31207.1  8 RSRMTSSLFATTVAASFFVVALPHLLPCPVPRTKYADGE 46
                5667889************************99999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 916.76
//
Query:       CCE31208.1  [L=320]
Description: uncharacterized protein CPUR_05059 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0005   19.8   0.0     0.0033   17.2   0.0    2.1  2  Cyclin_N  Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.043   7.6e+02      43      61 ..     107     125 ..     102     130 .. 0.84
   2 !   17.2   0.0   1.8e-07    0.0033      75     126 ..     181     233 ..     166     234 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.043
                 HHTT--TTHHHHHHHHHHH CS
    Cyclin_N  43 ekfkltpetlflavnyldR 61 
                 ++++l  et++lav +ld 
  CCE31208.1 107 SRVDLPIETVALAVCILDS 125
                 6788999*********995 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.8e-07
                 HHHHHHHHHHHHHHSSS---HHHHHHHTTT....SS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N  75 lvgatcLllAaKveeisppkledlvyitde....afteeeilemErliLetLnfdl 126
                  +++++L++A K+ e+ p +    ++++d       ++++++  Er i+e L++++
  CCE31208.1 181 IIVLAALVIAVKFTED-PQQH--TQFYCDTwgrgKWSHDQLNVTERCIMESLDYRI 233
                 799************9.5555..55555444467********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2582.39
//
Query:       CCE31209.1  [L=276]
Description: related to pyridoxamine-phosphate oxidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-21   75.8   4.2    4.2e-21   74.7   3.0    2.2  2  PNP_phzG_C       Pyridoxine 5'-phosphate oxidase C-terminal d
    3.9e-18   65.4   0.0    6.3e-18   64.7   0.0    1.3  1  Putative_PNPOx   Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
      0.092   13.4   0.0       0.35   11.5   0.0    2.0  1  Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> PNP_phzG_C  Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.78   4.7e+03      20      30 ..      76      86 ..      74     105 .. 0.68
   2 !   74.7   3.0     7e-25   4.2e-21       1      43 []     230     276 .]     230     276 .] 0.91

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.78
  PNP_phzG_C 20 RlHdRfrYere 30
                R+  R++Y +e
  CCE31209.1 76 RVSSRMVYLKE 86
                77788888543 PP

  == domain 2  score: 74.7 bits;  conditional E-value: 7e-25
  PNP_phzG_C   1 WgGyrvvPeeiEFWqgrpsRlHdRfrYereeed....gkWkierLsP 43 
                 WgG+r+vP+++EFWqgr+sRlHdRf+Yer+e +    ++W+++rLsP
  CCE31209.1 230 WGGLRIVPTRVEFWQGRESRLHDRFVYERKEGRdgkdEEWTVKRLSP 276
                 ****************************9875234559********9 PP

>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   1.1e-21   6.3e-18       8      88 .]      58     140 ..      47     140 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 1.1e-21
                     HHHHSSEEEEEEEE.TTSEEEEEEEEEEEETTTTEEEEEEETTS.HHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEEESCHH CS
  Putative_PNPOx   8 flaeskavvlATvd.edGrPnvspvllkagdgrdgivfatnads.rklrnleenprvallflddelgrgvrieGtaelvsdge 88 
                     ++  +++++l+T+  ++Gr+++++v lk++d r+g+v+++n  + rk+++l++np++al+f++++l r+vr+eG ae  s++e
      CCE31209.1  58 LVPHPETCALSTAElPSGRVSSRMVYLKELDSRGGYVIYSNFGTsRKAADLATNPHAALVFHWEALQRQVRVEGVAERYSREE 140
                     566789********9**************************9987********************************999886 PP

>> Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.9e-05      0.35      61      96 ..      99     133 ..      20     137 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.9e-05
                      ETTSHHHHHHH.H--EEEEEEEETTTTEEEEEEEEE CS
  Pyridox_oxase_2  61 DvrseKvkqlessnaaveavfylketreQfRisGka 96 
                         s+K+++l+ +n+++ +vf+ +  ++Q R++G a
       CCE31209.1  99 FGTSRKAADLA-TNPHAALVFHWEALQRQVRVEGVA 133
                      4468999***9.9*********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2324.58
//
Query:       CCE31210.1  [L=1889]
Description: probable URA2-multifunctional pyrimidine biosynthesis protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-111  370.6   0.3    3.5e-84  281.5   0.0    2.3  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    9.9e-49  164.4   0.0    2.6e-48  163.1   0.0    1.8  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
    1.4e-47  161.9   0.0    3.3e-47  160.7   0.0    1.7  1  GATase           Glutamine amidotransferase class-I
      6e-44  149.6   0.0    1.4e-43  148.4   0.0    1.7  1  OTCace_N         Aspartate/ornithine carbamoyltransferase, ca
    2.7e-39  134.3   0.0    5.9e-39  133.2   0.0    1.6  1  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 
    4.4e-32  111.3   0.0    9.9e-32  110.2   0.0    1.6  1  OTCace           Aspartate/ornithine carbamoyltransferase, As
    1.8e-22   79.4   0.0    3.6e-21   75.1   0.0    3.0  2  MGS              MGS-like domain
    1.5e-17   63.8   0.9    1.5e-07   31.2   0.1    2.5  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    2.8e-15   56.3   0.1    4.9e-07   29.5   0.1    2.4  2  ATP-grasp        ATP-grasp domain
    4.4e-10   39.4   0.0    7.1e-05   22.6   0.0    2.7  2  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
    7.1e-06   26.2   0.3      0.036   14.1   0.0    2.7  2  ATP-grasp_3      ATP-grasp domain
    2.7e-05   24.0   1.0      0.004   16.9   0.1    3.2  2  Peptidase_C26    Peptidase C26
    0.00028   20.7   0.0      0.015   15.1   0.0    2.8  2  DJ-1_PfpI        DJ-1/PfpI family
  ------ inclusion threshold ------
      0.026   14.3   0.0        2.7    7.7   0.0    3.0  2  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
      0.027   14.1   0.0        2.8    7.5   0.0    2.6  2  RimK             RimK-like ATP-grasp domain


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.5   0.0   2.9e-87   3.5e-84       1     210 [.     564     767 ..     564     768 .. 0.99
   2 !   86.9   0.1   1.1e-27   1.3e-24       4     201 ..    1104    1294 ..    1101    1303 .. 0.89

  Alignments for each domain:
  == domain 1  score: 281.5 bits;  conditional E-value: 2.9e-87
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D+e +++ ++ i++++++s++a  +++ ea++++k+ig+Pvi++aa++lGG+G+++a+neeel +l++ka+a++      +qvl+e+s+kg+keiE+e
   CCE31210.1 564 DRELFARSMDSIGEKCAKSASA--SSVAEAMHVVKDIGFPVIVRAAYALGGLGSGFANNEEELLDLCNKAFAAS------PQVLIERSMKGWKEIEYE 653
                  9*********************..*************************************************9......8***************** PP

                  EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS-- CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGld 194
                  v+rDa++n+itvc++en+++l  +t+++i+vAPsqtL+de++++lr++av+v+r++gvvg+++++++l+p+s+ey++iEvN+Rls++sala+kaTG++
   CCE31210.1 654 VVRDAQDNCITVCNMENFDPLgiHTGDSIVVAPSQTLSDEDYNMLRTTAVNVIRHLGVVGECNIQYALNPFSREYCIIEVNARLSRSSALASKATGYP 751
                  ************************************************************************************************** PP

                  HHHHHHHHHTT--GCG CS
  CPSase_L_D2 195 lvkeaakialgekLee 210
                  l+++aak++lg++L+e
   CCE31210.1 752 LAFIAAKLGLGIPLKE 767
                  **************97 PP

  == domain 2  score: 86.9 bits;  conditional E-value: 1.1e-27
                   HHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEE CS
  CPSase_L_D2    4 sakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvev 99  
                   +++++l++i+v+     +   ++  ea ++ ++++yPv++++++ l G  m  +++e++l+  +++a + ++    ++ v + k++++ keiE++ 
   CCE31210.1 1104 KFSRMLDRIEVDQPLWREL--TSFPEAREFCNTVSYPVLVRPSYVLSGAAMNTVYSEKDLESYLAQAAEVSR----EHPVVISKYIENAKEIEMDA 1193
                   5666666666665555555..78899*********************************************6....9******************9 PP

                   EEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS- CS
  CPSase_L_D2  100 lrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGl 193 
                   ++ ++g v+  +  e + +   + ++   + P q L++++ ++++ea+ k+  +++v+g  +++f+ +  ++++ viE N R s++ +  +k+ G+
   CCE31210.1 1194 VA-KDGVVVGHFISEHVENAgvHSGDATLILPPQDLEQATIERIEEATRKIGAALNVTGPFNIQFIAK--DNDIKVIECNVRASRSFPFVSKTMGV 1286
                   98.5567776666666666667********************************************99..69************************ PP

                   -HHHHHHH CS
  CPSase_L_D2  194 dlvkeaak 201 
                   dl+++a k
   CCE31210.1 1287 DLIEMATK 1294
                   ****9988 PP

>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.1   0.0   2.2e-51   2.6e-48       3     127 ..      23     161 ..      21     162 .. 0.92

  Alignments for each domain:
  == domain 1  score: 163.1 bits;  conditional E-value: 2.2e-51
  CPSase_sm_chain   3 vLvLedGtvfeGksfg.akeavGEvvfnTgmtGYqeiltDpsYagqilvltypliGnyGv.needves...........ekikvaglvvrelse 83 
                      +L LedG++++G+sfg ak+++GE+vf+Tgm+GY+e+ltDpsY+gqilv+t+pl+GnyGv ++e++++           ++i+vag+v+++++ 
       CCE31210.1  23 CLELEDGSAYTGYSFGaAKSVSGELVFQTGMVGYPESLTDPSYRGQILVITFPLVGNYGVpSRETMDEllgdlpahfesSQIHVAGVVAASYCG 116
                      799*************77999***************************************74455555777777777779*************7 PP

  CPSase_sm_chain  84 .epsnwraeesLsewlkeekipgisgvDTRaLtkklrekgamkgv 127
                       ++s++ a++sL +wlke+++p+++gvDTRaLtkk+rekg+m+g+
       CCE31210.1 117 eDYSHFLATSSLGTWLKEQGVPAMYGVDTRALTKKIREKGSMLGK 161
                      69****************************************997 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.7   0.0   2.8e-50   3.3e-47       3     189 ..     234     410 ..     232     411 .. 0.96

  Alignments for each domain:
  == domain 1  score: 160.7 bits;  conditional E-value: 2.8e-50
                 EESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCT.STS-EEEETHHHHHHHHHTTTEEEEEECEE CS
      GATase   3 iDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikeare.nkiPiLGICLGmQllaiefgrkvvkekeke 99 
                 +D++  +++n +++++++gv+v v p+d++  ++    +++dg+++s+Gpg+p+  + ++++++ ++e nk+P++GICLG+Q+la ++g+k+ k+k ++
  CCE31210.1 234 VDVG--MKYNQLRCFLKRGVEVMVCPWDHDLVKEA--GDQYDGLFLSNGPGDPSiLDVTVKNVQAVMEkNKTPVFGICLGHQVLARASGAKTSKMK-FG 327
                 6777..9**********************999995..79****************************999**************************.** PP

                 EEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHHH CS
      GATase 100 hhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnflik 189
                 ++g+++++++        +++++i++++H+++v+  +++p+g++ ++++++d+++++i++ ++p+++vQFHPEst++p+++e+lf+ +i+
  CCE31210.1 328 NRGHNIPCTS------LVTGKCHITSQNHGFAVDA-DTLPSGWKELFVNANDGSNEGIMHVDKPYFSVQFHPESTPGPRDTEFLFDVFIN 410
                 **********......55557*************8.**************************************************9986 PP

>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   0.0   1.2e-46   1.4e-43       3     148 .]    1589    1728 ..    1587    1728 .. 0.97

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 1.2e-46
                  BSSGGGS-HHHHHHHHHHHHHHHHHHHTTT-STTTTT-EEEEEESS--HHHHHHHHHHHHHTTSEEEEEESTTTSCTTTGGSTTSSCHHHHHHHHHH CS
    OTCace_N    3 llsledlskeeieelldlaaelkekvkkekkekllkgktlallFeepStRTrvSfevAakrlGgkvlslseaediqlssvskgrkEsleDtarvlsr 99  
                  +ls++++s+++++ l+++a+e++  v++    ++l+g++l++lF+epStRT++Sf++A++rlGg+++ + ++     ssv+kg  Esl+Dt+r+l++
  CCE31210.1 1589 VLSVSKYSRADLHLLFTVAQEMRLGVQRAGVLDILRGRVLCTLFYEPSTRTSASFDAAMQRLGGRTVAVPTS----HSSVKKG--ESLQDTLRTLAC 1679
                  799******************************************************************966....6889***..************ PP

                  HTSEEEEEESSHHHHHHHHHHHSSEEEEEEETSSB-HHHHHHHHHHHHH CS
    OTCace_N  100 yvdaiviRhpgaeeleelakyasvpviNagdgdgeHPtQaLaDlltire 148 
                  y+daiv+Rhp++++++   ky+ vpviN+g+g++eHPtQa++Dl+tire
  CCE31210.1 1680 YGDAIVLRHPDEQSVHVAEKYSAVPVINGGNGSKEHPTQAFLDLFTIRE 1728
                  **********9999**999****************************98 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.0   4.9e-42   5.9e-39       2     122 .]     853     975 ..     852     975 .. 0.97

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 4.9e-42
  CPSase_L_D3   2 elkeptdeRifaiaealrrglsveeiheltkidpwFLekleelvelekelkkkkk...eldeellreakklGfsDkqiaelleeeeeeevrelrkklg 96 
                  el++p+d+R+faia+a+++g+sv++i e+tkid+wFL+kl+ l +++k+++++++     +++ll +ak+lGf D+q+a+++  ++e +vr++r ++g
   CCE31210.1 853 ELQTPSDQRLFAIANAMHEGYSVDKIWEMTKIDKWFLRKLKGLSDFAKDMSRYTTkdiARSPDLLVQAKRLGFCDRQLAKFWD-SNEIAVRRMRLEAG 949
                  799************************************************99989899999*******************86.78889********* PP

  CPSase_L_D3  97 ilpvykrvDtcAaeFeaetpYlYstY 122
                  ++p +k++Dt+AaeF+a t+YlY tY
   CCE31210.1 950 VRPFVKQIDTVAAEFPAFTNYLYLTY 975
                  *************************9 PP

>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   8.3e-35   9.9e-32       1     156 [.    1734    1884 ..    1734    1885 .. 0.88

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 8.3e-35
                  CC.EEEEESS.TTSHHHHHHHHHHHHCT-EEEEES-TTSSH-HHHHHHHHHHHHHHT-EEEEESSCH.HHHTT-SEEEE--SSETTCCGGHHHHHHH CS
      OTCace    1 kglkiafvGd.kknnvanslikllarlgmdvvlvaPkglepdkevleeakknakksggsititedle.eavkgaDvvytdvwvsmgeekereerlkk 95  
                  kgl+i+f+Gd  ++++++sl++ll  ++++v+lvaPkgle  ++v ++++++    g+ +  +e l+ e ++  Dv+y ++++  +e  e  e+++k
  CCE31210.1 1734 KGLTITFLGDlLYGRTVHSLVQLLRHYQVQVQLVAPKGLELPEDVRSQLAAS----GQLLCESETLTpEIIARSDVLYCTRVQ--QERFESAEQYEK 1824
                  79*************************************9977777666555....44444444444477*************..445566699*** PP

                  HCC.CSB-HHHHHHS-TT-EEEE-S---BTTTB-HHHHTSTTBHHHHHHHHHHHHHHHHHHH CS
      OTCace   96 lkd.yqvteellklakkdaivlHcLPakrgeEvtdeVfdsprsvvfeqaeNrlhtikAllvl 156 
                  +k+ y+v+++ lk+ak++++v+H+LP  r+eEv++eV+ ++r+++f+q++++l+ ++All+l
  CCE31210.1 1825 VKNsYRVDNAALKHAKSQMVVMHPLP--RNEEVAEEVDFDQRAAYFRQMRYGLYCRMALLAL 1884
                  **99**********************..********************************97 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0     3e-24   3.6e-21       1      95 []    1382    1479 ..    1382    1479 .. 0.96
   2 ?    0.1   0.0      0.79   9.4e+02      34      82 ..    1819    1861 ..    1807    1868 .. 0.71

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 3e-24
                  THHHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHH....CHHHHHHHHHHHTTSHE CS
         MGS    1 glvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrveildaikngeidlvintlypfkatva....kdgykirraaenidIpl 93  
                  +l++ ++kl+++g++l+AT GTa++l+e+g++ ++  e++g +e  + + +++++++++ idl+in+++++k ++     ++gyk+rr+a++++Ipl
  CCE31210.1 1382 ELLPSIQKLQRIGYKLFATAGTADFLQEHGVQ-VQYLEVLGRDEDVNSEFSLTQHLAKNMIDLYINLPSNNKYRRPanymSKGYKTRRMAVDYQIPL 1477
                  58999***************************.88888899999******************************999******************** PP

                  ES CS
         MGS   94 pt 95  
                  +t
  CCE31210.1 1478 VT 1479
                  98 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.79
                  EECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHHCHHHHH CS
         MGS   34 tevvektgegerlggrveildaikngeidlvintlypfkatvakdgyki 82  
                  +e  ek++   r      + +a+k+ + ++v++ + p+++ va +++++
  CCE31210.1 1819 AEQYEKVKNSYRV-----DNAALKHAKSQMVVMHPLPRNEEVA-EEVDF 1861
                  4444555555444.....58999****************9998.55554 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   2.1e-10   2.5e-07      27     173 ..     590     734 ..     578     736 .. 0.86
   2 !   31.2   0.1   1.3e-10   1.5e-07      28     173 ..    1128    1270 ..    1112    1290 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2.1e-10
                      HHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHHHC. CS
  Dala_Dala_lig_C  27 llekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeai.egreievavlgneklevsevgeivvkkgfydyeakysd 119
                         +v++ +g+pv+V++a +   +G   +++eeel +  ++af    +vl+E+ +   +eie  v+ + + ++ +v ++    + +d    +++
       CCE31210.1 590 EAMHVVKDIGFPVIVRAAYALGGLGSGFANNEEELLDLCNKAFAASPQVLIERSMkGWKEIEYEVVRDAQDNCITVCNM----ENFDPLGIHTG 679
                      457899**************99*********************************6679********888888777655....44666666778 PP

                      TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEE.ETTTEEEEEEEE CS
  Dala_Dala_lig_C 120 dkaqlevpaklekeveekiqelalkaykaldlrGlaRvDffl.teegeivlnEvN 173
                      d++ +    +l++e ++ ++++a+++ + l++ G + + + l   + e  + EvN
       CCE31210.1 680 DSIVVAPSQTLSDEDYNMLRTTAVNVIRHLGVVGECNIQYALnPFSREYCIIEVN 734
                      9999999999****************************99995567888899998 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 1.3e-10
                       HHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHT..T-SCEEEEE--.ESEEEEEEEEETSSCEE.EEEEEEE-SSSSS-HHH CS
  Dala_Dala_lig_C   28 lekveeelgypvfVKpareGSSvGvskveseeelkeaieeafk..ydekvlvEeai.egreievavlgneklev.sevgeivvkkgfydyea 115 
                        ++ +++++ypv+V+p+   S   ++ v se++l++++++a++  +++ v++ ++i +++eie+  + ++ + v + + e+v + g+     
       CCE31210.1 1128 AREFCNTVSYPVLVRPSYVLSGAAMNTVYSEKDLESYLAQAAEvsREHPVVISKYIeNAKEIEMDAVAKDGVVVgHFISEHVENAGVH---- 1215
                       4678999*********************************987225678*******99*****9655545555405566666666664.... PP

                       HHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEE CS
  Dala_Dala_lig_C  116 kysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvN 173 
                         s+d++ +  p +le+++ e+i+e+  k+ +al+++G   + f+ + +++i + E N
       CCE31210.1 1216 --SGDATLILPPQDLEQATIERIEEATRKIGAALNVTGPFNIQFIAK-DNDIKVIECN 1270
                       ..578888999*******************************99876.8888888988 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.5e-08   1.8e-05       7     138 ..     578     714 ..     572     732 .. 0.87
   2 !   29.5   0.1   4.1e-10   4.9e-07       4     159 ..    1112    1272 ..    1109    1276 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.5e-08
                 -B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC..GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEEEEETT CS
   ATP-grasp   7 pvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal..keekvivEefvpfekElsvlvvrsaeGetafypvvetvqedg 103
                 + ++ + ++s +e+ ++++++g+pv+v+ +  +  G G+ + ++ee+l ++ + +  ++ +v++E  ++  kE+   vvr+a+ +  ++  +e+    g
  CCE31210.1 578 KCAKSASASSVAEAMHVVKDIGFPVIVR-AAYALGGLGSGFANNEEELLDLCNKAfaASPQVLIERSMKGWKEIEYEVVRDAQDNCITVCNMENFDPLG 675
                 667888899999****************.8999***************9999988888999***********************999999999999888 PP

                 EEE...EEEECEE-.SCHHHHHHHHHHHHHHHHHTSSEE CS
   ATP-grasp 104 ilr...lsvapaev.sekaqkkaeeiakkiveeLggvGv 138
                 i     ++vap++  s+++ +  +++a +++++Lg+vG 
  CCE31210.1 676 IHTgdsIVVAPSQTlSDEDYNMLRTTAVNVIRHLGVVGE 714
                 8743337888877615557778888999*********95 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 4.1e-10
                  TT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE--EE CS
   ATP-grasp    4 lglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafypvv 96  
                   ++  p +  ++s  e++e+++++ +pv+v+ +    +G     v se+dle+ l+++    +e++v++ ++++  kE+ +  + +++G ++   + 
  CCE31210.1 1112 IEVDQPLWRELTSFPEAREFCNTVSYPVLVR-PSYVLSGAAMNTVYSEKDLESYLAQAaevsREHPVVISKYIENAKEIEMD-AVAKDGVVVGHFIS 1206
                  5677889999*********************.99999*************99888777788799***************765.55667766555555 PP

                  EEEE....ETTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS CS
   ATP-grasp   97 etvq....edgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapR 159 
                  e+v+    ++g+  l + p++++++  +++ee ++ki ++L++ G f + +  + d+++ v E   R
  CCE31210.1 1207 EHVEnagvHSGDATLILPPQDLEQATIERIEEATRKIGAALNVTGPFNIQFIAK-DNDIKVIECNVR 1272
                  5554111256788999*********************************86666.999999887776 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     3e-05     0.036      49     119 ..     698     771 ..     687     781 .. 0.79
   2 !   22.6   0.0   5.9e-08   7.1e-05      47     116 ..    1234    1304 ..    1175    1317 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3e-05
  ATPgrasp_Ter  49 lielaerlaeefgldglvnvQvrededg..pkLLEiNpRasGGlg.ysalaGvnlpylalklllgleteeveep 119
                   l   a ++++++g+ g  n+Q+  +     ++++E+N+R s      s ++G  l+ +a+kl lg + +e+++ 
    CCE31210.1 698 LRTTAVNVIRHLGVVGECNIQYALNPFSreYCIIEVNARLSRSSAlASKATGYPLAFIAAKLGLGIPLKEIKNS 771
                   5567999**************998753335**********96555156777**************977777655 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 5.9e-08
  ATPgrasp_Ter   47 eelielaerlaeefgldglvnvQvrededgpkLLEiNpRasGGlgy.salaGvnlpylalklllgleteev 116 
                    e++ e+++++  +++++g +n+Q+  +++  k++E N Ras  +   s   Gv+l+++a k++++++ +e 
    CCE31210.1 1234 ERIEEATRKIGAALNVTGPFNIQFIAKDNDIKVIECNVRASRSFPFvSKTMGVDLIEMATKAIMHQPFTEY 1304
                    56778999999********************************98615566************99854444 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00078      0.93      34     159 ..     602     738 ..     583     740 .. 0.67
   2 !   14.1   0.0     3e-05     0.036       2     158 ..    1100    1273 ..    1099    1276 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00078
                  EEEEESS-------B--SS--TTE.............EEEE---S.EEEEEEEEE.SSSEEEEEEEEEEEET........TEEEEEEES----HHHHH CS
  ATP-grasp_3  34 lvvKprdGaggesvrvveekeeaeaaieeve......lvqefieG.kplSvsllsdgekvlvlavnrqliekaeke....fvyaGnvtpietelkeev 120
                  ++v  +++ gg +  +++++ee+   +++        l+ + ++G k++  +++ d++++ + ++n +  +  + +    +v a + t    e+ + +
   CCE31210.1 602 VIVRAAYALGGLGSGFANNEEELLDLCNKAFaaspqvLIERSMKGwKEIEYEVVRDAQDNCITVCNMENFDPLGIHtgdsIVVAPSQT-LSDEDYNML 698
                  6666666666666666666666655444443556666666666665566777777777777777777666543333222133332222.233667788 PP

                  HHHHHHHHTTSTT--EEEEEEEEESS...SEEEEEEESS-- CS
  ATP-grasp_3 121 velaeevvekleglaGyvGvDlvlkd..eepyviEvNPRlt 159
                  +++a +v+++l g++G   +   l+    e ++iEvN+Rl 
   CCE31210.1 699 RTTAVNVIRHL-GVVGECNIQYALNPfsREYCIIEVNARLS 738
                  99999999999.99999999999998989**********85 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 3e-05
                   TSHHHHHHHHTTT.S---...........-EESS--SSSEEEEESS-------B--SS--TTE...............EEEE---.SEEEEEEEEE CS
  ATP-grasp_3    2 sdKlktykkLkeagvkvP.......tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefie.GkplSvslls 81  
                   ++ +k+ + L++ +v  P            e ++ + +++ v p++   g ++  v  ++++e+ +++ +        +++++ie  k++ +++++
   CCE31210.1 1100 ENRYKFSRMLDRIEVDQPlwreltsFPEAREFCNTVSYPVLVRPSYVLSGAAMNTVYSEKDLESYLAQAAevsrehpvVISKYIEnAKEIEMDAVA 1195
                   67888888888888888877544311122333455599999***9999888888888888888888877788999999******945889999999 PP

                   .SSSEEEEEEEEEEEET....TEEEEEEES-..---HHHHHHHHHHHHHTTST...T--EEEEEEEEESS.SEEEEEEESS- CS
  ATP-grasp_3   82 dgekvlvlavnrqliekaekefvyaGnvtpi..etelkeevvelaeevvekle...glaGyvGvDlvlkdeepyviEvNPRl 158 
                   +   v+v  +  +++e   +  v +G  t i  +++l++ ++e +ee+++k+    ++ G + + ++ kd+++ viE N R 
   CCE31210.1 1196 KD-GVVVGHFISEHVE---NAGVHSGDATLIlpPQDLEQATIERIEEATRKIGaalNVTGPFNIQFIAKDNDIKVIECNVRA 1273
                   55.4444444444444...46899999887622334477777777777777766569999999****************995 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   3.4e-06     0.004     101     216 .]     296     393 ..     277     393 .. 0.68
   2 ?   -2.3   0.1       2.5     3e+03     163     196 ..    1165    1200 ..    1149    1208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.4e-06
  Peptidase_C26 101 alergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeie.vnslHhqaike..laeelrveAvae. 192
                    + ++++P++giC+G+q+l+ a G ++ + ++       +      +  h++  +  sl+       + + +   H +a++   l ++++   v + 
     CCE31210.1 296 MEKNKTPVFGICLGHQVLARASGAKTSK-MK-------F-----GNRGHNIPCT--SLVT-----GKCHiTSQNHGFAVDAdtLPSGWKELFVNAn 371
                    446789************8888865533.22.......1.....3445666553..2222.....2333034468899876668999976655444 PP

  Peptidase_C26 193 DgviEaieseeakafvlgvQwHPE 216
                    Dg  E i + ++  ++++vQ+HPE
     CCE31210.1 372 DGSNEGIMHVDK--PYFSVQFHPE 393
                    999999999984..6889999998 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.5
  Peptidase_C26  163 lgseeievnslHhqaike...laeelrveAvaeDgvi 196 
                     l  + +ev   H   i++    a+e+++ Ava+Dgv+
     CCE31210.1 1165 LA-QAAEVSREHPVVISKyieNAKEIEMDAVAKDGVV 1200
                     44.6677888888888876667999999*******98 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-05     0.015      43     118 ..     248     324 ..     222     326 .. 0.73
   2 ?    2.1   0.0      0.13   1.5e+02      14      46 ..     466     498 ..     459     533 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
                 TTSEEEE-...SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHH.HTT-EEEEETTTHHHHHHTTTTTTSEE CS
   DJ-1_PfpI  43 srGlkvtv...daslddvkaaeyDalvlpGGragperlrenekvvelvkefa.ekgklvaaICagpqlLaaagvlkgrrv 118
                 +rG++v v   d+ l + + ++yD l l  G   p  l      v+ v+ ++ +++++v+ IC g q+La+a+  k  ++
  CCE31210.1 248 KRGVEVMVcpwDHDLVKEAGDQYDGLFLSNGPGDPSILDV---TVKNVQAVMeKNKTPVFGICLGHQVLARASGAKTSKM 324
                 5664444322366666667779*******99998887775...566666666256679**************99887775 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHTTEEEEEEESSTSEEEETTSE CS
   DJ-1_PfpI  14 vElivpvdvlkragikvdvvsvdkeevkgsrGl 46 
                 +  +  +++lk++gi ++++ ++  ++++s+Gl
  CCE31210.1 466 YSGSQAIKALKEEGIYTVLINPNIATIQTSKGL 498
                 55567899************************4 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0022       2.7      10     104 ..     572     660 ..     565     706 .. 0.82
   2 ?    2.8   0.0     0.073        88       8      99 ..    1107    1194 ..    1102    1274 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0022
                 HHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S.EEEEEEEEECTTE CS
      GARS_A  10 lkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvsllalvdgkt 104
                 ++ +g + a+ ++ ++++ea +++++ ++++ +v+a+   +g g   a++eee l+  ++ +       a+ +v+iE  ++G +E+   ++ d ++
  CCE31210.1 572 MDSIGEKCAKSASASSVAEAMHVVKDIGFPV-IVRAAYALGGLGSGFANNEEELLDLCNKAFA------ASPQVLIERSMKGwKEIEYEVVRDAQD 660
                 67788899999********************.999999999************9999988885......99***********66888877777654 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.073
                  HHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---.SEEEEEEEE CS
      GARS_A    8 dllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelle.GeEvsllal 99  
                  ++l+++++  + ++++t+  ea+e+ ++++ ++  v+++ + +g  +  + se++  +++++        + ++ vvi +++e  +E+ + a+
  CCE31210.1 1107 RMLDRIEVDQPLWRELTSFPEAREFCNTVSYPV-LVRPSYVLSGAAMNTVYSEKDLESYLAQAA----EVSREHPVVISKYIEnAKEIEMDAV 1194
                  47899999999999****99*******999999.888888888877777766665544444443....3455677777777762356655555 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.036        43      23      69 ..     584     628 ..     567     652 .. 0.80
   2 ?    7.5   0.0    0.0024       2.8       1     180 [.    1099    1288 ..    1099    1296 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.036
                 EESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHH CS
        RimK  23 lardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvl 69 
                  a +  +a ++++ i  +fPv+v+  ++  G++  +a++e++l ++ 
  CCE31210.1 584 SASSVAEAMHVVKDI--GFPVIVRAAYALGGLGSGFANNEEELLDLC 628
                 455556666667777..7**********************9997775 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0024
                  HH-HHHHHHHHHHTT-----EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH.....GGG--EEEEE--SS-SEEEEE CS
        RimK    1 ardKlkslklLakakikvpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea.....lkeailvqeyieeaenediRv 92  
                  a++++k  ++L + +++ p  +   +  +a+++ + +  + Pv+v+ ++   G  +     e++l++ l        ++ +++ +yie+a++ ++  
  CCE31210.1 1099 AENRYKFSRMLDRIEVDQPLWRELTSFPEAREFCNTV--SYPVLVRPSYVLSGAAMNTVYSEKDLESYLAQaaevsREHPVVISKYIENAKEIEMDA 1193
                  6788899999999999999999999999999****99..7*************9999999999999988655676455567**************** PP

                  EEETTEEEEEEEEE--SSS----TTTT-EEEE-...---HHHHHHHHHHHHHC..T-SEEE...EEEEEETTEEEEEEEE..SS--SHHHHHHHT-- CS
        RimK   93 lvvddevvaalrrvskeGdFRsnlhrGgvaekl...qlseeekelAikaakam..elvvaG...vDllrakrgllvlEvn..sspglekiektlgid 179 
                  +  d+ vv+ +     e    + +h G ++  l   +l++   e   +a++ +  +l v+G   +  + +++++ v+E n  +s     ++kt+g+d
  CCE31210.1 1194 VAKDGVVVGHFISEHVE---NAGVHSGDATLILppqDLEQATIERIEEATRKIgaALNVTGpfnIQFIAKDNDIKVIECNvrASRSFPFVSKTMGVD 1287
                  99999999987655545...56677777664331102222222222233333311344554444666666666666665533555666666666666 PP

                  H CS
        RimK  180 i 180 
                  +
  CCE31210.1 1288 L 1288
                  5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1889 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.46
# Mc/sec: 12298.70
//
Query:       CCE31211.1  [L=608]
Description: related to CYC8-general repressor of transcription [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00048   19.0  43.5    0.00074   18.4  43.5    1.3  1  Caldesmon       Caldesmon
     0.0037   17.2  17.8     0.0037   17.2  17.8    3.1  2  SPX             SPX domain
  ------ inclusion threshold ------
      0.084   12.3   0.0      0.084   12.3   0.0    3.2  2  Plasmodium_Vir  Plasmodium vivax Vir protein
        2.9    6.0  10.3        3.9    5.6  10.3    1.1  1  RAP1            Rhoptry-associated protein 1 (RAP-1)


Domain annotation for each model (and alignments):
>> Caldesmon  Caldesmon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4  43.5   1.7e-07   0.00074      21     215 ..     155     333 ..     141     479 .. 0.47

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.7e-07
   Caldesmon  21 rsreseepssqsdslvetnshrsevteeaselkssgeegddedqalldrlakreerrqrrlkealerqkeldaeaaeaseerslaeekeeaeeeekssr 119
                 +s++s  +ss+s+++ ++ns++s++++++++++ss++++ +  q  + + +++++++q+++++++++q++++ +++++++ ++ + +++++++++++++
  CCE31211.1 155 SSSSSSSNSSNSSNSNSNNSNNSNSNNNNNNSSSSSSSSSSSTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ-PQPQPQQQQQQQQQPQQE 252
                 33333333444444444444444443333333333333333333333333333333333333222222222222222222.122233333333344444 PP

   Caldesmon 120 rkeryrdeeeeeeeteekekereekkqaeskeeeeeekaeaeee..aeeeeeekkvdesedkevseelkdeeskqvleekkaieeskkqngaeeevea 215
                 ++++++++++++ ++++++k++++ +qa++++++ ++ ++++++  +++ +++++                  k  +++ ++ +++++q++  ++++ 
  CCE31211.1 253 QQQQLNQQQQQQLNQHQQSKKHQQIQQAQHHHQQIQQPQQQHQQgqQQQLHRQQAL-----------------KLQSQQTQQPHQQQHQQSLVSQMNP 333
                 44444333333333333333333333333333322222222222001111111111.................1111111111122222222222222 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2  17.8   8.3e-07    0.0037      53     172 ..      21     218 ..       9     226 .. 0.55
   2 ?  -23.7  64.9         4   1.8e+04      40     158 ..     206     361 ..     197     475 .. 0.48

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.3e-07
         SPX  53 pedskkksse.rtepstsaaadesgnsaadasssepkdeae.......................................................... 92 
                 ++++++++++ + +p +++a                    +                                                          
  CCE31211.1  21 QSQQQQSPPQqQPQPQQQQA--------------------Qltpqmmynqqqqfalmqqagfnpaanpqmmqgmsggmmqnprmpgmnphgqvpgysqq 99 
                 11111111111222222222....................13344555555556666666688888899999*************************** PP

         SPX  93 ..............................................slprrsplsrssrssssygglvssppsansssssddssesnpadsssssssse 145
                                                                       +r + +  s ++++s+++++++s+s++++++++++++++sssss+
  CCE31211.1 100 lqagaygqmmpgglpqnfvpnqymmaggmqgfpmvqqgmnhqqiqmM-------QRMQAHINSSSSSSSNSSNSSNSNSNNSNNSNSNNNNNNSSSSSS 191
                 ************************************99955544441.......333333333333333333333333333333333222222223333 PP

         SPX 146 sesssssspsllrrlfsesesreekse 172
                 s+sss++++++ ++ ++++++++++++
  CCE31211.1 192 SSSSSTQQQQQQQQQQQQQQQQQQQQQ 218
                 333333333333222221111111111 PP

  == domain 2  score: -23.7 bits;  conditional E-value: 4
         SPX  40 gleaetlrellnrpedskkksse....rtepstsaaadesgnsaadasssepkdeae...........slprrsplsrssrssssygglvssppsanss 123
                 ++++++ ++  ++++++++++ +    +++p ++++++++       ++++p++e++           +         ++++s+  +++++ ++++++ 
  CCE31211.1 206 QQQQQQQQQQQQQQQQQQQQQ-QqqqqQQQPQPQPQQQQQ-------QQQQPQQEQQqqlnqqqqqqlN---------QHQQSKKHQQIQQAQHHHQQI 287
                 111111111111111111111.112222222222222111.......1111111111222121223332.........222222233333333333333 PP

         SPX 124 sssddssesnpa.......................................dssssssssesesssssspsllr 158
                 ++ ++++++ ++                                       +++++ +s +++++++s +++l 
  CCE31211.1 288 QQPQQQHQQGQQqqlhrqqalklqsqqtqqphqqqhqqslvsqmnpgltqvSTPQRPPSIAQSTPTNSINQQLP 361
                 33333333332222233333355555555555555555555555555544434444444444444444444443 PP

>> Plasmodium_Vir  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05     0.084     232     307 ..      11     191 ..       2     197 .. 0.84
   2 ?  -27.1  46.4         4   1.8e+04     211     291 ..     192     271 ..     187     394 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
  Plasmodium_Vir 232 kekaeqgksekslgseslssekpearkgve................................................................. 261
                     +  +++g++ +s++++s  +++p+++++ +                                                                 
      CCE31211.1  11 PAFNQPGTPQQSQQQQSPPQQQPQPQQQQAqltpqmmynqqqqfalmqqagfnpaanpqmmqgmsggmmqnprmpgmnphgqvpgysqqlqagay 105
                     55567777777888888888888777777788888888888888999999999999999999999999999999999999999999999999999 PP

  Plasmodium_Vir 262 ........................................eqlvhaltsassgtgndaspesiansssslesvseelssnfirnii 307
                                                             +q  +a +++ss  ++++s +s +ns++s  s+s+++++n+ ++++
      CCE31211.1 106 gqmmpgglpqnfvpnqymmaggmqgfpmvqqgmnhqqiqmMQRMQAHINSSSSSSSNSSNSSNSNSNNSNNSNSNNNNNNSSSSSS 191
                     99999999999999999999999999999999999999998888888888888888888888888888888888888888877765 PP

  == domain 2  score: -27.1 bits;  conditional E-value: 4
  Plasmodium_Vir 211 pkeaeeklkqekaaeapellnkekaeqgksekslgseslssekpearkgveeqlvhaltsassgtgndaspesianssssl 291
                     +++++++  q + + + +++++++++q+++ ++++++++++++p+++ + ++q+ ++ ++ +++  n+ + ++  n+++ +
      CCE31211.1 192 SSSSSTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQPQPQQQQQQQQQPQQEQQQQLNQQQQQQL-NQHQQS 271
                     44455555555555555555566666666666666666666666666665533333333333333333333332.222222 PP

>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  10.3   0.00088       3.9     143     183 ..     154     196 ..     136     275 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.00088
        RAP1 143 ksssdskskasaksnvksa.skyGesssse.esatdsskasas 183
                 +sss s+s++s  sn+ s  s+  +s+  + +s+  ss++s+s
  CCE31211.1 154 NSSSSSSSNSSNSSNSNSNnSNNSNSNNNNnNSSSSSSSSSSS 196
                 3334444444444444332123333333320222222322322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      5947  (0.331697); expected 358.6 (0.02)
Passed bias filter:                     1396  (0.0778627); expected 358.6 (0.02)
Passed Vit filter:                      1199  (0.0668749); expected 17.9 (0.001)
Passed Fwd filter:                       284  (0.0158403); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 3.77u 0.45s 00:00:04.22 Elapsed: 00:00:00.86
# Mc/sec: 2133.80
//
Query:       CCE31212.1  [L=723]
Description: uncharacterized protein CPUR_05063 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-22   78.1   0.0    2.2e-20   73.4   0.0    2.3  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.5e-14   53.9   0.0      5e-14   52.3   0.0    1.9  2  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   2.5e-24   2.2e-20       2     250 ..     232     649 ..     231     652 .. 0.79

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 2.5e-24
                    EEEEE-STTTCGGGGTTGHHHHHHHHT....TSEEEEEEETTSTTSSSTTTGB.............CHH........................... CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd....gfdvillDlrGvgySspapacin............ddy........................... 54 
                    ++vi +G+pg+s+  ++ gla+  + +    ++dv++ D+rGv  S+pa+ac +            ++y                           
     CCE31212.1 232 TIVIEPGGPGGSGTSMAWGLAEEVSLRfsdgKYDVLGWDPRGVNASQPAIACFPhdvdrdhwsarvSEYresssspraqlefadamnesvfaacke 327
                    69********9988777669998888899***********************99666665555555444999999********************* PP

                    .........SHHHHHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGEEEEEEESE.......CSSCCHHHHHHHHHHHHHHCHHCHHHH CS
  Abhydrolase_1  55 .........gtasvaddldrildalgddklt.lvGhSmGGmialayaaeyperVkalvllga.......idpaaslieaqrqqaksfpdffdgyaa 133
                             +ta va+dl+ i+ alg d+lt ++  S+G+ i+ +y +++p+rV +++l+g+       +   + +  ++   ++++ +f+   +a
     CCE31212.1 328 ihgdlprfvSTAFVARDLEEIRKALGEDELTgYL-VSYGTGIGQTYSSMFPNRVGRMILDGTeyvrdqrMLGGFGWAALDNATDAWHDGFLGECVA 422
                    *******************************666.8****************************99988888899999999999999999999988 PP

                    HHHHHHHHHHHHCCSCHHHHHHHHHHHHHH.................................................................. CS
  Abhydrolase_1 134 dcarnpagplladelaaleqrhrlvdalkf.................................................................. 163
                    ++a   a  +  ++ + + q  +l +++k+                                                                  
     CCE31212.1 423 VGADHCALAKPYKKGNKSMQLADLDNRMKKlvnslikrpvigytesngptvitysalvsalygamyvakswptlaqmlaeleagnstlaaqilers 518
                    888777777777666666666666666666777899999999999999999999988888888888888888888888888888888888888888 PP

                    .......................................HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC.....THHHHS.EE CS
  Abhydrolase_1 164 .......................................pdkskrfpssgsdnasslatgalksieqwpttdsaklllrlre.....lknvla.pt 214
                                                             ++++++    ++ +s+ +g + +++ +p ++++k++ +  e     l+  l+ p 
     CCE31212.1 519 awqydptdpapitrrpstdeladlvicadqydaiqpedgITWYDSLWA--NMTKTSWIAGNSRFLSIFPCRHFSKYWPQPAEvyrgdLNMTLSnPL 612
                    888888888888888888888888888888888888888566666666..3466666666666666666666666666655566555433333588 PP

                    EEEEETTCSSSCHHHHHHHHHC.HTSEEEEEEETCSS CS
  Abhydrolase_1 215 lvisgtsDplvppkaledlaql.lpkkrlvvisdagH 250
                    l+i+ t+Dp++p +++++l +   +++rl++  ++gH
     CCE31212.1 613 LLIAETYDPATPLRNGRRLLHEmGRNARLIAHHGYGH 649
                    8888899999888555554333233345555555555 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.65   5.8e+03      16      49 ..     518     554 ..     505     560 .. 0.63
   2 !   52.3   0.0   5.5e-18     5e-14      17     103 .]     592     679 ..     574     679 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.65
  Abhydrolase_4  16 agwpvspqrprdestakg..a.apvLllqnerDpaTP 49 
                    ++w+++p++p + +  ++  + a+  + + ++D++ P
     CCE31212.1 518 SAWQYDPTDPAPITRRPStdElADLVICADQYDAIQP 554
                    6787777777666665443244666666777887766 PP

  == domain 2  score: 52.3 bits;  conditional E-value: 5.5e-18
  Abhydrolase_4  17 gwpvspqrprdestakgaapvLllqnerDpaTPyegakklakalgg.avlvtvegeGHgalaagntCvdkavdaYLltGelpa.ddtvC 103
                     wp + +  r + + + ++p Ll++ ++DpaTP++ +++l +++g+ a+l+  +g GH +  ++++C +   +aY+l Gelp+ ++t+C
     CCE31212.1 592 YWPQPAEVYRGDLNMTLSNPLLLIAETYDPATPLRNGRRLLHEMGRnARLIAHHGYGHSSR-DTSSCTNAIAKAYILHGELPDePETAC 679
                    5787777777777776689*************************999************85.89******************9667776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 5132.69
//
Query:       CCE31213.1  [L=418]
Description: uncharacterized protein CPUR_05064 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3437.30
//
Query:       CCE31214.1  [L=635]
Description: related to protein kinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-37  128.5   0.0    3.9e-37  128.1   0.0    1.1  1  Pkinase          Protein kinase domain
    1.1e-18   67.5   0.0      3e-18   66.1   0.0    1.7  1  Pkinase_Tyr      Protein tyrosine kinase
    2.5e-05   23.8   0.0    5.5e-05   22.6   0.0    1.5  1  Kinase-like      Kinase-like
    0.00041   20.5   0.0    0.00083   19.5   0.0    1.4  1  ABC1             ABC1 family
     0.0061   16.5   0.1      0.012   15.5   0.1    1.5  1  APH              Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.034   13.8   0.0    1.7  1  RIO1             RIO1 family
      0.061   13.2   0.0        2.4    8.1   0.0    2.4  2  Peptidase_M23_N  Peptidase family M23 N-terminal domain
        5.5    6.5   8.7        9.8    5.7   8.7    1.3  1  SR-25            Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   0.0   1.7e-40   3.9e-37      13     261 ..     346     624 ..     335     626 .. 0.84

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 1.7e-40
                 EEEEEEE.ETTTTEEEEEEEEECHCHCHHHH........HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH....HHSS..-- CS
     Pkinase  13 GkVykav.eketgkivAvKkikkekakkkke........kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle....rkgs..ls 96 
                 + Vy a+ ++  ++iv vK++k++ a+  +         +  lrE++  + l+h+ ivr+y+   + + l l +e+v+ ++la + +    ++ +   +
  CCE31214.1 346 SAVYTAHySRIPDEIVTVKVLKTRVANVGESernvirqaDMWLRECQSQEDLQHESIVRYYGG--DARFLSLYMEHVDAQDLAAANRwrnrQNECfkGT 442
                 5666665134457899999999998877666667888878899*****************995..67888889********999888777744441245 PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS- CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkp 195
                  ++a++i++ i+ +l y+H+++++H D+Kp NiL++ ++   ++DFGl++ +++s+   s  gt++Y++PE ++++  ++++DvW+lGv+++ +l +  
  CCE31214.1 443 RDDASRILRDIAGALGYIHERKLVHNDIKPTNILYSPERGAVLCDFGLSTPASNSH---SSGGTPYYVPPEFIGTKLRGPASDVWALGVTMLYVLRK-I 537
                 67**********************************777788***********976...99******************************999655.5 PP

                 STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS..........................-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 196 pfsgekgkekvekeldqlekilkilg.etkeklpeasei..........................seeakdllkkllkkdpkkRltaeellqh 261
                  +++++ ++      ++   +++++g  ++ ++p++++                           ++ + +l+k++l+ +p++R+t++++lq+
  CCE31214.1 538 TYPESRANK----RHHK--PLYWLIGgINNSNVPQQKQYgnglsavsqmrewleeifdareilntEDRLERLVKDMLTPNPNNRITMKKVLQE 624
                 566333333....2222..3444444488899999999999*************************************************985 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   1.3e-21     3e-18       7     259 .]     340     625 ..     334     625 .. 0.77

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 1.3e-21
                  EEEESSEEEEEEEEETTTTSSEEEEEEEEEST.........TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   7 lGeGafGkVvegtlkgekekkevkVavKtlke.........eateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  +++ + + V+ ++++   +  ++ V vK+lk          ++  ++ ++ l+e++  ++l+h+ iv+++g     + l + +e v+  dL    r +
   CCE31214.1 340 IASTSLSAVYTAHYS---RIPDEIVTVKVLKTrvanvgeseRNVIRQADMWLRECQSQEDLQHESIVRYYGGDA--RFLSLYMEHVDAQDLAAANRWR 432
                  566666777888777...55556677777764222221111222234567889******************876..6788999********8665444 PP

                  ..CTTTS..BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHH CS
  Pkinase_Tyr  96 ..ekekl..tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvW 189
                    ++e +  t +d  ++  ++A ++ y++++klvH d+   N+L s ++ + ++DfGL+      ++    +++     +++pE + +k    +sDvW
   CCE31214.1 433 nrQNECFkgTRDDASRILRDIAGALGYIHERKLVHNDIKPTNILYSPERGAVLCDFGLSTPA---SNS---HSSGGTPYYVPPEFIGTKLRGPASDVW 524
                  114444322567899*********************************************99...333...3334445699***************** PP

                  HHHHHHHHHHTTSSGT..............................TTTS.HHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 190 sfGvllwEiftlgesp..............................ypgl.kneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  + Gv++  ++ +   p                               +gl   +++ e l+e    ++  +++++l +l+k+ ++ +p++R t+++++
   CCE31214.1 525 ALGVTMLYVLRKITYPesrankrhhkplywligginnsnvpqqkqyGNGLsAVSQMREWLEEIFDAREILNTEDRLERLVKDMLTPNPNNRITMKKVL 622
                  *********99999998999999999999998888888888877743344455667788888888888888899999999999999999999999888 PP

                  HHH CS
  Pkinase_Tyr 257 ekl 259
                  ++l
   CCE31214.1 623 QEL 625
                  765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.4e-08   5.5e-05     159     288 .]     459     615 ..     449     615 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.4e-08
  Kinase-like 159 nLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyri.wclklPltlate 255
                  +++++ lvh++++++n+l+ ++ g +l +f+    a ++   s     + PpE++g + +           + d+W+lG++++++   ++ P   a +
   CCE31214.1 459 YIHERKLVHNDIKPTNILYSPERGAVLCDFGLSTPASNSHS-SGGTPYYVPPEFIGTKLR---------GPASDVWALGVTMLYVlRKITYPESRANK 546
                  67999*************************96666666666.888899*********777.........4578*******986651567888887777 PP

  Kinase-like 256 eakeew....................................kfklckkipekvkaLlkkfLqlsqedR 288
                    ++                                      + + + +  + +++L+k +L ++ ++R
   CCE31214.1 547 RHHKPLywligginnsnvpqqkqygnglsavsqmrewleeifDAREILNTEDRLERLVKDMLTPNPNNR 615
                  766654568888888888888888888888888888888866556677888888888888888888777 PP

>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.7e-07   0.00083      15      81 ..     336     404 ..     329     409 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.7e-07
        ABC1  15 deePiAaASiaqVhrAklks..geeVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvd 81 
                 ++ PiA+ S++ V++A+ +   +e V vKv + +v++  +s+ ++++++  +l+++ ++ +l+ e +v+
  CCE31214.1 336 KRDPIASTSLSAVYTAHYSRipDEIVTVKVLKTRVANVGESERNVIRQADMWLRECQSQEDLQHESIVR 404
                 678**************995569********************99999999999988888877777765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   5.4e-06     0.012     119     198 ..     418     493 ..     368     495 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.4e-06
                 HCHTCCHHHHHHCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 119 laqdlellrqlesatarllaselld.lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 +++d+ +l+  +++  r ++ e+++  + ++ + +l+ +a  l    ++ l+H+D++p N+l  p+ g v  + Df+++++
  CCE31214.1 418 EHVDAQDLAAANRW--RNRQNECFKgTRDDASR-ILRDIAGALGYIHERKLVHNDIKPTNILYSPERGAV--LCDFGLSTP 493
                 44555666666777..88888888887888888.6666665555568999*******************9..*****9986 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.5e-05     0.034      85     160 ..     417     499 ..     413     501 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
                 EE--E.ETTEEGGBHHHCG.-.....HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTTEEETTSTTH CS
        RIO1  85 mefig.edgvaapklkdve.e.....eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQaveldhpna 160
                 me ++ +d  aa + ++ + e     +++a+++++++  ++  + +e +lvH D+   N+l++ + + v+ D++ ++++++ ++
  CCE31214.1 417 MEHVDaQDLAAANRWRNRQnEcfkgtRDDASRILRDIAGALGYI-HERKLVHNDIKPTNILYSPErGAVLCDFGLSTPASNSHS 499
                 55555333333334444332244344788889999998865555.5*******************99******99999988776 PP

>> Peptidase_M23_N  Peptidase family M23 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.065   1.5e+02      34      71 ..      84     121 ..      69     122 .. 0.81
   2 ?    8.1   0.0    0.0011       2.4       8      36 ..     199     227 ..     198     231 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.065
                      STTSSEEEEEE--TT--SEEEEEEEE-TT-EEEEEEE- CS
  Peptidase_M23_N  34 eeknqwlaiVGipLkvkpgqqqlsvtkpakrslpFeVs 71 
                      +++ qwla+ +   +++++q+++   +++ ++++F+V+
       CCE31214.1  84 SDNCQWLALRAEVASTEQPQHKVLAVTQTPKDIKFSVR 121
                      44589999999999999999997666678999***996 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0011
                      EEEEE-S--SS--EEEETTEEEEEEESTT CS
  Peptidase_M23_N   8 vaviplgakaqaPevtyqgkrvlvvkeek 36 
                      vav++  + ++ P v yq ++ lv ++++
       CCE31214.1 199 VAVLDFRILEKRPVVLYQARPALVYQSSS 227
                      89**********************99876 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   8.7    0.0044       9.8      64     105 ..     225     265 ..     215     279 .. 0.45

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0044
       SR-25  64 sssssssssssssssssssssssddrkkrgkkkdkkkkkkkk 105
                 ssssssss s sss+s   s+s+++  kr ++ d  ++k +k
  CCE31214.1 225 SSSSSSSSLSLSSSPSLVWSKSNSS-MKRPQSPDAEEHKANK 265
                 3444444444444444333333333.2222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 4693.99
//
Query:       CCE31215.1  [L=208]
Description: uncharacterized protein CPUR_05066 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1600.47
//
Query:       CCE31216.1  [L=331]
Description: uncharacterized protein CPUR_05067 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-06   26.6   0.0    1.1e-05   25.5   0.0    1.7  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   6.2e-10   1.1e-05       3      58 ..      18      94 ..      16     150 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 6.2e-10
                EEEEEEEEEETTSEEEEEEES..SSSTTT.EESSEEECBT.................TSHHHHHHHHHHHHHHSE.E CS
       NUDIX  3 rravgvvllnekgevLlvrrs..kkpfpg.WelPgGkvep.................gEtpeeAArREleEEtGl.e 58
                r++ +v+ll   +evLl++r    + f++ + +PgG +++                 g +++  A+RE++EEtG+  
  CCE31216.1 18 RPSSSVLLLSATNEVLLLHRVktSTSFASaYVFPGGNLDAfhdgkipaadsperhrdGAAYRFGAIRETFEETGIlL 94
                78899*******9********44333333567************************888***************622 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2521.94
//
Query:       CCE31217.1  [L=1009]
Description: uncharacterized protein CPUR_05068 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-26   91.9   0.2    3.6e-26   90.9   0.2    1.6  1  Slx4      Slx4 endonuclease
    1.7e-07   30.3  56.4      0.081   12.8   3.6    6.4  5  AT_hook   AT hook motif
  ------ inclusion threshold ------
       0.13   12.0   0.8       0.26   11.0   0.8    1.4  1  TPR_11    TPR repeat


Domain annotation for each model (and alignments):
>> Slx4  Slx4 endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.2     6e-30   3.6e-26       1      61 []     925     997 ..     925     997 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 6e-30
                 HHHHHHHHHT........-HHHHHHHHTT--EEHHHHHHHHHHH-GGGG......GS-HHHHHHHHHHHT--EE- CS
        Slx4   1 feaiteaiks........dpslhekILlYePIvLedltawLnteglglk......evdpaelrewcdskgIcctw 61 
                 fe+it+ai++        +ps+hekILlY+PIvLedltawLn++  +l+      e++pa+l++wcdsk+Icc+w
  CCE31217.1 925 FEYITRAITTaprtsvptEPSWHEKILLYDPIVLEDLTAWLNSG--ELTrvgynkEIKPAKLKNWCDSKSICCLW 997
                 799*****************************************..77779**********************99 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   5.9   0.00019       1.1       1      10 [.     649     658 ..     649     659 .. 0.92
   2 !    9.3   5.9   0.00019       1.1       1      10 [.     679     688 ..     679     689 .. 0.92
   3 !   12.8   3.6   1.4e-05     0.081       1      12 [.     709     720 ..     709     721 .. 0.90
   4 !   12.8   3.6   1.4e-05     0.081       1      12 [.     739     750 ..     739     751 .. 0.90
   5 !    9.3   5.9   0.00019       1.1       1      10 [.     769     778 ..     769     779 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00019
     AT_hook   1 kRkRGRPrKa 10 
                 kR+RGRPrK+
  CCE31217.1 649 KRPRGRPRKD 658
                 8********7 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00019
     AT_hook   1 kRkRGRPrKa 10 
                 kR+RGRPrK+
  CCE31217.1 679 KRPRGRPRKD 688
                 8********7 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 1.4e-05
     AT_hook   1 kRkRGRPrKaat 12 
                 kR+RGRPrK+++
  CCE31217.1 709 KRPRGRPRKDSV 720
                 8********986 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 1.4e-05
     AT_hook   1 kRkRGRPrKaat 12 
                 kR+RGRPrK+++
  CCE31217.1 739 KRPRGRPRKDSV 750
                 8********986 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.00019
     AT_hook   1 kRkRGRPrKa 10 
                 kR+RGRPrK+
  CCE31217.1 769 KRPRGRPRKD 778
                 8********7 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   4.3e-05      0.26      13      29 ..     324     340 ..     323     341 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.3e-05
      TPR_11  13 AieaYkkAlkldPdnae 29 
                 A +aYk+A ++dP+na 
  CCE31217.1 324 ATAAYKQATQIDPQNAA 340
                 5689***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1009 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1192  (0.0664845); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.27s 00:00:01.14 Elapsed: 00:00:00.42
# Mc/sec: 7131.38
//
Query:       CCE31218.1  [L=87]
Description: probable 40s ribosomal protein s21 (CRP-7) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-40  137.1   0.1    1.8e-40  136.9   0.1    1.0  1  Ribosomal_S21e  Ribosomal protein S21e


Domain annotation for each model (and alignments):
>> Ribosomal_S21e  Ribosomal protein S21e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.9   0.1   9.9e-45   1.8e-40       1      79 []       1      80 [.       1      80 [. 0.99

  Alignments for each domain:
  == domain 1  score: 136.9 bits;  conditional E-value: 9.9e-45
  Ribosomal_S21e  1 mqndagelVdlYiPrkcsatnrlItakDhasvqinvaevdetGra.tgesttyalsgairrkGesddslnrlakkdgllk 79
                    m+nd+ge+VdlY+Prkcsatnr+I+akDh+svqi++a+vde+Gra +ge+++yal+g++r++Gesdd++nrla++dgllk
      CCE31218.1  1 MENDRGEIVDLYVPRKCSATNRIIKAKDHGSVQISIAKVDESGRAiSGENHVYALCGFVRAMGESDDAMNRLAQRDGLLK 80
                    9*******************************************99*******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 673.68
//
Query:       CCE31219.1  [L=589]
Description: probable deoxyribodipyrimidine photo-lyase PHR [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-83  278.2   0.5    5.5e-83  277.4   0.1    1.6  2  FAD_binding_7   FAD binding domain of DNA photolyase
    1.5e-41  142.2   0.1    2.4e-41  141.5   0.1    1.3  1  DNA_photolyase  DNA photolyase


Domain annotation for each model (and alignments):
>> FAD_binding_7  FAD binding domain of DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.54   4.8e+03     161     190 ..      33      61 ..      25      70 .. 0.63
   2 !  277.4   0.1   6.1e-87   5.5e-83       1     201 [.     387     582 ..     387     583 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.54
                    T-GGGSGCHHHHHHT--TTTSS---SS-HH CS
  FAD_binding_7 161 hepwkapaeeqkkagvvlgkdYpkpivdhk 190
                     ep++  a e +k g+vl+k Yp  + + +
     CCE31219.1  33 REPHH-RAGEAEKHGIVLRKYYPPEMNNER 61 
                    56663.445666778888888887765543 PP

  == domain 2  score: 277.4 bits;  conditional E-value: 6.1e-87
                    HHHHHHHHHHHHHHHHCSTTTT.TSSTTGCCTT------HH.HHHHHHTT-SS-HHHHHHHHHHHHHS---HHHHHHHHHHHCTTT-B-HHHHHHH CS
  FAD_binding_7   1 flreLlwrefyyallaaepela.eralkekfdripweeseeekleaWkeGrTGfPlvDAamrqLretGwmhnrlRmivasFltkdLlidWregeev 95 
                    +++e++wr+fy+++l+++p ++ ++++k+++++i+w+ +e+ +++aW+eGrTGfP+vDAamrqL++ G+mhnr+Rmiva+Fl kdLlidWr+ge++
     CCE31219.1 387 WISEVAWRDFYKHVLVHWPYVCmNKPFKPEYSNIDWSYDED-QFKAWCEGRTGFPIVDAAMRQLKHLGYMHNRCRMIVACFLAKDLLIDWRKGERY 481
                    99*******************989************88866.7***************************************************** PP

                    HHHH-TT--CCHHHHHHHHHCT-STTS-STT----CCCCHHHCSTT-HHHHHH-GGGTTS-HHHHT-GGGSGCHHHHHHT--TTTSS---SS-HHH CS
  FAD_binding_7  96 FeellvDadlasnagnwqwlagtgadaapafrifnpvkqgkkfDpegeyirrwvpeLkklpakyihepwkapaeeqkkagvvlgkdYpkpivdhke 191
                    F+e+l+D+d+asn+g+w ++a++g+d +p+frifnp+ q++kfDp+geyirrwvpeLk+l +k ih+p+          ++v++  Yp+piv hke
     CCE31219.1 482 FMETLIDGDFASNNGGWGFSASVGVDPQPYFRIFNPLLQSEKFDPDGEYIRRWVPELKSLTNKQIHDPYGRGVG-----SQVKKAGYPQPIVVHKE 572
                    *********************************************************************55444.....4578999********** PP

                    HHHHHHHHHH CS
  FAD_binding_7 192 arkraleayk 201
                     r+ral+ayk
     CCE31219.1 573 CRDRALSAYK 582
                    ********98 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.5   0.1   2.7e-45   2.4e-41       1     157 [.      97     261 ..      97     274 .. 0.91

  Alignments for each domain:
  == domain 1  score: 141.5 bits;  conditional E-value: 2.7e-45
                     EEEEESS---STT-HHHH....HHHCTTSEEEEEEEE-HH..HHTCGS-CHHHHHHHHHHHHHHHHHHHHTT--EEEEESS....HHHHHHHHHH CS
  DNA_photolyase   1 vlvWfrrDlRlhDNpALa....aAaasgepvipvfvldpe..kahklrvgaarvdfllesLadLdeeLrelgirLvvrrgd....padvlpelak 85 
                     v++Wf+rDlR++DN+ALa    +A ++g p+i++++++p+  +ah   ++++rvdf l++L+ L+++L++l+i+L+v ++d    + + + el++
      CCE31219.1  97 VVHWFKRDLRCNDNRALAlaseKAKEAGVPLICMYIVSPQdfEAHL--TAPIRVDFELRTLEILKQDLAKLDIPLYVETVDkrknIPNRISELLE 189
                     79****************444444777888**********555555..5********************************7788778888**** PP

                     HCTECEEEEE---SHHHHHHHHHHHHHHHHCTSEEEEE--SSSS-HHHHHTTTSSSHSSHHHHHHCHHHHHC CS
  DNA_photolyase  86 elgasavvanreyepdererdeavkealrkagievesfddhtlvepgevktkkgkpykvFtpfrkrwlkelk 157
                     ++g ++++an eye+de +r++ + +al+++g ++e ++d+++v+pge+kt++g  y v++p++++w +++ 
      CCE31219.1 190 QWGSRHLFANMEYEVDELRREASMVRALSENGKALEVVHDSCVVPPGELKTGTGNQYAVYSPWFRTWVAHVH 261
                     *******************************************************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4257.45
//
Query:       CCE31220.1  [L=537]
Description: uncharacterized protein CPUR_05071 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-54  183.2   0.1    8.9e-54  182.4   0.0    1.5  2  XLF       XLF-Cernunnos, XRcc4-like factor, NHEJ component
  ------ inclusion threshold ------
          4    6.7   9.6        6.8    6.0   9.6    1.3  1  U79_P34   HSV U79 / HCMV P34
        5.1    5.8   8.6         43    2.7   8.6    2.0  1  SAPS      SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> XLF  XLF-Cernunnos, XRcc4-like factor, NHEJ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.4   0.0   1.5e-57   8.9e-54       1     179 []       8     191 ..       8     191 .. 0.98
   2 ?   -4.3   0.5       2.9   1.7e+04     143     157 ..     511     525 ..     507     527 .. 0.79

  Alignments for each domain:
  == domain 1  score: 182.4 bits;  conditional E-value: 1.5e-57
         XLF   1 aWrvleidgse..pkllvklefsessyellltDlanvWseeldrdeilkrakeentsidpsedeeqlavlleklrkaldgskkssaefslnlss....k 93 
                 +Wr+l+++ s   p llv++++++ssy + ++D+anvWse+ldr++i++r ++entsidps++ee+++++l+ l++ald +++ ++++sl+ls+    +
  CCE31220.1   8 TWRPLPLPVSYglPVLLVSADMGPSSYVVSVSDMANVWSEKLDRKAICMRGWSENTSIDPSDTEENMNKFLSCLKSALDPTQDGHDTTSLSLSPatvsD 106
                 5******99889****************************************************************************99999988888 PP

         XLF  94 aeedsLtlkltieLpgplspleWefslvkepsssltkeLvlpllqasaelkrqveeLieilkeKDavIskLldklessGadlsevf 179
                 a+e +Lt+++t+ L+g+ spl W+++l+k p+s++++eLvlpl+qa+  +  +v +L e++k KD+vI+k++dkle++Ga+l++vf
  CCE31220.1 107 AGEGGLTINVTCRLQGF-SPLRWPIHLKKLPPSAVATELVLPLIQANFDRLLEVHSLTEVIKCKDSVITKMSDKLEAMGAGLEHVF 191
                 8888************7.9******************************************************************9 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 2.9
         XLF 143 lkrqveeLieilkeK 157
                  +r+ eeL + l++K
  CCE31220.1 511 ADRKREELKRELEKK 525
                 578899999999998 PP

>> U79_P34  HSV U79 / HCMV P34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   9.6    0.0011       6.8     152     197 ..     479     526 ..     458     535 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0011
     U79_P34 152 rkkaddeqrkrsgkqkekrkvedidkkkedek..rkeeerkksdedks 197
                 +++ dde r rs +qke  k+e+  +   +e+  rk+ee k++ e+k 
  CCE31220.1 479 KHQDDDESRGRSTQQKEPPKLEEKPRESSQERadRKREELKRELEKKA 526
                 45678999***************9998888865699999999988765 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   8.6    0.0072        43     223     337 ..     142     426 ..     140     535 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0072
        SAPS 223 veLiaeLLhcsnmallnekkgeeivkerDevrerlleeltseeealedvs................................................. 272
                 +eL+  L++ +   ll+ ++ +e++k +D v ++++++l++   +le+v                                                  
  CCE31220.1 142 TELVLPLIQANFDRLLEVHSLTEVIKCKDSVITKMSDKLEAMGAGLEHVFtalsgrkgvtraaaedrvkgvgsfnvhkwkdeldsdasgpggvseliqg 240
                 799999********************************9888777777777777777777777777778888999999999999999999999999999 PP

        SAPS 273 ..................................deaskeesaesedltdkdedvsleesksakd.................................. 303
                                                   +++++++++ s + t+++ + s  ++++++d                                  
  CCE31220.1 241 vfgasglecrtsleiddspaldqwwhgfqptgqfSQQKQTKAPPSRSSTSTVPKRSAFHNDDDDDdfqvqstpphlkstedtahspnetghvdatvdki 339
                 999999999999999999999999999999999966666666666666666666666665555555666666666777777666677777777777777 PP

        SAPS 304 .....................................................enkesdesesdtaeesseededdasseesalaee 337
                                                                      ++k + + +++ta+e+se+d+ +as ++s la+ 
  CCE31220.1 340 qdlkmpdsgpssvlsdrrrqpeteratsrlgaigvkrqpaqprhppsspshgdDAKLPLDDDEETASEASEDDDVTASLQNSSLASP 426
                 777777777777777777777777777777777777777777777777777665555556666666666666666666666654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1100  (0.0613531); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3705.80
//
Query:       CCE31221.1  [L=497]
Description: uncharacterized protein CPUR_05072 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-17   62.8   0.1    4.4e-17   62.1   0.1    1.3  1  Forkhead  Forkhead domain


Domain annotation for each model (and alignments):
>> Forkhead  Forkhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.1   2.5e-21   4.4e-17       6      66 ..     167     226 ..     162     249 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 2.5e-21
                 -HHHHHHHHHHT-TTT-B-HHHHHHHHHCC-HHHHCC.-CCHHHHHHHHHHHHC--EEETT CS
    Forkhead   6 sYaaLIaqAiksspekkltLseIyefieenfpyyrtaakkgWqnSirhnLslnkcFekvpr 66 
                  Ya LI++A+ s  ++ ++++eIy++++en +  +   ++gW nSirhnLsln +F+k+++
  CCE31221.1 167 PYARLICRALMSRDDHTMSVQEIYTWFRENTKKAEA-LSTGWTNSIRHNLSLNAAFVKTES 226
                 6**********************************9.59*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3699.14
//
Query:       CCE31222.1  [L=546]
Description: related to cactin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-60  202.2   2.0    9.3e-60  201.7   2.0    1.2  1  Cactin_mid      Conserved mid region of cactin
    5.9e-57  191.0   5.2    9.5e-57  190.3   5.2    1.3  1  CactinC_cactus  Cactus-binding C-terminus of cactin protein
  ------ inclusion threshold ------
      0.013   15.5   3.7      0.054   13.5   0.4    2.6  2  DUF1087         Domain of Unknown Function (DUF1087)
      0.057   13.8   0.0       0.14   12.5   0.0    1.6  1  SF3A2           Pre-mRNA-splicing factor SF3a complex subunit


Domain annotation for each model (and alignments):
>> Cactin_mid  Conserved mid region of cactin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.7   2.0   2.1e-63   9.3e-60       3     198 .]      52     239 ..      50     239 .. 0.96

  Alignments for each domain:
  == domain 1  score: 201.7 bits;  conditional E-value: 2.1e-63
  Cactin_mid   3 keeeqyeeweakEeeFhleqakkraeiRikegrakpiDlLaknlrlvdeeedeedde.adleieleePykileglsleeleeleediksyleleksekn 100
                 +eeeq+++++a+E++F+l+q+k++a+iR++egrakpiD La+nlr++d+e+d +dd+  d+ i +++P +i++gl l+el+ele+di sy+ le++ +n
  CCE31222.1  52 TEEEQSRKFVADEDKFVLKQSKRKANIRMREGRAKPIDRLAFNLRYIDPERDLFDDDdGDVYIMVNSPLEIINGLPLAELKELESDITSYHVLETETEN 150
                 79***************************************************999888999************************************* PP

  Cactin_mid 101 aefWkallvvckdeleklkkkeeekeaaeeaeesgihasveadikkilkgksleeLeelekqikekLesgeavDveYWesllkklkvykAkarLkdih 198
                 +++W+al+++c d  +k          +++ +++++ +sv  di++il++k++++Le+lekqik+kL+s++++D++YWe+ll++l v+k+ka+L +ih
  CCE31222.1 151 RRYWEALRTLCIDLQSKT---------EATMRDGRVVNSVMGDIDRILSPKTYDQLETLEKQIKAKLRSDDDIDTDYWEQLLRHLMVWKSKAILGRIH 239
                 *************99982.........2477899************************************************************9987 PP

>> CactinC_cactus  Cactus-binding C-terminus of cactin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.3   5.2   2.1e-60   9.5e-57       1     125 []     409     546 .]     409     546 .] 0.98

  Alignments for each domain:
  == domain 1  score: 190.3 bits;  conditional E-value: 2.1e-60
  CactinC_cactus   1 wedkyelrkPkyfnrvktgyeWnkynkthydednpPPkvvqgykFnifypdLidkekaptykiekk...........teeeetvllrfkagkpYe 84 
                     w+dky++rkP+yfnrv++gyeWnkyn+thyd+dnpPPk+v+gykFnifypdLi+k+kapt+ki ++           + ee+t+l+rf ag+pYe
      CCE31222.1 409 WADKYRARKPRYFNRVQMGYEWNKYNQTHYDHDNPPPKMVHGYKFNIFYPDLIEKTKAPTFKIFREhgrrrgesfaaAGEEDTCLIRFIAGPPYE 503
                     99***************************************************************99*********988999************* PP

  CactinC_cactus  85 diafrivdkewdlskk..rgfkssfergvlqlyfnfkkskyrr 125
                     diafrivd+ewd s+k  rgfkssfe+g+lql+f+fkk +yr+
      CCE31222.1 504 DIAFRIVDREWDFSSKreRGFKSSFEKGILQLHFQFKKIFYRK 546
                     ************9987679**********************97 PP

>> DUF1087  Domain of Unknown Function (DUF1087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2     0.049   2.2e+02      15      27 ..     145     157 ..     130     159 .. 0.72
   2 ?   13.5   0.4   1.2e-05     0.054      12      30 ..     204     225 ..     195     227 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.049
     DUF1087  15 enesedpdYWekL 27 
                 e+e+e+ +YWe L
  CCE31222.1 145 ETETENRRYWEAL 157
                 6899999****87 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.2e-05
     DUF1087  12 ikq...enesedpdYWekLLrh 30 
                 ik+   + ++ d+dYWe+LLrh
  CCE31222.1 204 IKAklrSDDDIDTDYWEQLLRH 225
                 222243578889*********9 PP

>> SF3A2  Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.2e-05      0.14      18      81 ..     448     517 ..     431     531 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.2e-05
       SF3A2  18 qvgllvevkypeike.evkPlhrimsaleqkleekpd.....kkvqyLliaaePYetiafkipskeidks 81 
                  +g  +++ yp+  e +++P ++i  +  +++ e+       + +    ia  PYe iaf+i ++e d s
  CCE31222.1 448 VHGYKFNIFYPDLIEkTKAPTFKIFREHGRRRGESFAaageeDTCLIRFIAGPPYEDIAFRIVDREWDFS 517
                 5688899999987664667999999988866554333333214444556*************99987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 4122.42
//
Query:       CCE31223.1  [L=946]
Description: uncharacterized protein CPUR_05074 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-22   77.5   0.0    1.4e-21   76.8   0.0    1.4  1  Fungal_trans  Fungal specific transcription factor domain
    8.8e-09   35.3  12.0    1.8e-08   34.3  12.0    1.5  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   1.5e-25   1.4e-21       2     199 ..     324     516 ..     319     573 .. 0.92

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 1.5e-25
  Fungal_trans   2 drffsnfhpqfpilhkpsflpkt..ssenssksayaspllllailalGalfsesetkesnssltses.....qefiafplraeilihedfsspsssl 91 
                   +++ +n+ p+  i+h ps++     + +n  k +  + +l+++i+  + +++e ++ ++ + + ++      +  + + l++++l+       +s+l
    CCE31223.1 324 SIYIENVEPLVKIMHVPSVDLIMcdARDNFDKLTPGNKALVFVIYLAAVTSLEPDEVQTYFGANKNHllaqfRFAVEQALAKAKLL------DTSDL 414
                   6888999999999999999988888899999999*************************999999888888866667777888888......8888* PP

  Fungal_trans  92 wilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcd 188
                    +l ++ l+ ++ k  +d + ++ + g+avr+a+ +gLhr+ s+ +      l+++eae+rrRlwwa+ +lD + a  lG   ++++++ ++++P +
    CCE31223.1 415 VVLRAFTLFLVVVKRHEDSRFCWALTGLAVRIAQGMGLHRDGSHLK------LSPFEAEMRRRLWWAILILDLRSADELGTDMTISETSYDTLMPAN 505
                   **********************************************......*******************************99************ PP

  Fungal_trans 189 dddlwesddas 199
                    +d ++  + +
    CCE31223.1 506 INDSDIGPEST 516
                   **999887665 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3  12.0     2e-12   1.8e-08       1      33 [.      77     107 ..      77     113 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 2e-12
                 SS-HHHHHCT---STSSSS-HHHHHCTHHHCCC CS
     Zn_clus   1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfy 33 
                 ++C +Cr++Kv+Cd++ P CsnC++ + +C  +
  CCE31223.1  77 RSCVTCRRRKVRCDKQMP-CSNCRRARIPCA-F 107
                 59****************.***********8.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.40
# Mc/sec: 7130.19
//
Query:       CCE31224.1  [L=139]
Description: probable ribosomal protein L23.e, cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-33  112.9   0.0    1.2e-32  112.6   0.0    1.0  1  Ribosomal_L14  Ribosomal protein L14p/L23e


Domain annotation for each model (and alignments):
>> Ribosomal_L14  Ribosomal protein L14p/L23e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   0.0   6.4e-37   1.2e-32       4     119 ..      21     136 ..      19     139 .] 0.93

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 6.4e-37
                    SS-EEE--SSSSBSEEEEEEETT-.....---EE-SSSEEEEEESSS-T...TTSSCEEEEEEEE-SS-EE-TTS-EEEESS-EEEEB-TTS-BSS CS
  Ribosomal_L14   4 lktrlkvaDNsgakevecikvlggk....krkaasvGdiivvsvkkakpkgkvkkgdvvkavvvrtkkevrrkdGsvirfddnaaVllnkkgeplG 95 
                    +++++++aDNsga+++++i+v g +    + +a+ vGd+++++vkk+kp   + +++v+ av+vr++k+++r dG+++ f+dna V++n kge++G
     CCE31224.1  21 VGAVMNCADNSGARNLYIISVKGIGarlnRLPAGGVGDMVMATVKKGKP---ELRKKVHPAVIVRQSKPWKRFDGVFLYFEDNAGVIVNPKGEMKG 113
                    6789******************9985453449*****************...899***************************************** PP

                    -.B-SBEEHHHHHH.-HHHHHTBS CS
  Ribosomal_L14  96 trifgpvarelrekkflkivslAp 119
                    + i+gpv +e++e  +++i+s + 
     CCE31224.1 114 SAITGPVGKEAAEL-WPRIASNSG 136
                    *************9.****99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1159.91
//
Query:       CCE31225.1  [L=1275]
Description: uncharacterized protein CPUR_05076 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.25s 00:00:01.06 Elapsed: 00:00:00.41
# Mc/sec: 9277.12
//
Query:       CCE31226.1  [L=515]
Description: related to D.melanogaster troponin T and human nucleolin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-173  577.8   0.1   2.2e-173  577.5   0.1    1.0  1  DUF5427   Family of unknown function (DUF5427)


Domain annotation for each model (and alignments):
>> DUF5427  Family of unknown function (DUF5427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  577.5   0.1  1.2e-177  2.2e-173       2     465 .]      17     487 ..      16     487 .. 0.89

  Alignments for each domain:
  == domain 1  score: 577.5 bits;  conditional E-value: 1.2e-177
     DUF5427   2 efleslpedktvkkkkkkkktkkkkkakkkdeediLaeLe.eLak..ke.srpaTPrvksnkskkaspkkkksaeepakeekkkeeessedkrksvest 96 
                 e+++++++d ++kk++++k   ++k +k++ ++diLa+Le +La+  ++ srp+TPr+k+    ++         +p+  e+++  ++s++ rks++st
  CCE31226.1  17 ELFQGIGDDAKSKKPTNTK---TAKPSKATGDDDILADLEsQLAAeqASvSRPHTPRLKEG-GPRR------PPGTPPVGEDRT--TASTTVRKSTDST 103
                 6799999888333333332...222333334449*********9986568********998.2222......345666665653..44444599***** PP

     DUF5427  97 rsleasetpseeeseeqeaekkeeeeeeaeeeeadpiasgsgWWgsilatasaavkqaeaavkeiqtneeAkkwaeqvrg.....nvgalrglgdelrt 190
                 +sl+as+tps+++s+ +eaekk +++e  +++ +++ + g+gWWg+il+ta+  +kqaeaa+keiq+neeAkkwa+qvrg     +vgalr++gdelr+
  CCE31226.1 104 TSLRASFTPSATSSDLHEAEKKGTAAE--QRQPQQQNQPGGGWWGGILSTATGVMKQAEAAYKEIQHNEEAKKWADQVRGlsegiHVGALRNYGDELRS 200
                 *****************9999944444..456778888999********************************************************** PP

     DUF5427 191 ralptltellktlappisshEvLqIhithDlvnypsLdplvyekFsrvmsqVeGgdllvvqrgqesterrsseesskssagwrdgpwwrq.dskrdLnl 288
                 ralpt+t++l+tlappisshE+L IhithDlv+yps+dpl++++F+rvmsqVeGgdllvvqrgqe+++rrss+    ++agw+dgpwwrq d +r+L+l
  CCE31226.1 201 RALPTFTNILHTLAPPISSHERLMIHITHDLVGYPSMDPLINSVFARVMSQVEGGDLLVVQRGQENSSRRSSD----RTAGWHDGPWWRQtDISRELGL 295
                 *******************************************************************999765....58******************** PP

     DUF5427 289 vkGlvegeKLaranaesyakeyfkarggleeaakrakeelsesnpvrssdiFlaiqaisvkskk......aaeekekeesevvdeneedesvsFaivlk 381
                 v+G+veg+KL+ra+aesya+eyf+a+gg+e+a++ra+e+lsesnpvr+sd+Fl++qai  ++++      +++ekeke+s + +++e+d+ v+Fa+++ 
  CCE31226.1 296 VNGMVEGTKLCRASAESYANEYFAATGGIEQARTRATEDLSESNPVRTSDLFLSLQAILFDADNtlfaasTSSEKEKESSVIKEQDEADQLVCFAVHVL 394
                 *******************************************************************986556788888888888888*********** PP

     DUF5427 382 DivhditfitvSQsfPlkWieWLdae.kpktseskeee........elpeeieeiiesggvdPreWVaeWieegLsLavGvvAqrYVakRMGv 465
                 D+vh+i+f+tvSQs+P kW++WLda+ +p t++s+ee+         +p++ ++i +sggvdPreWVaeW+e++L+L+vGvvAqrYVa+RMGv
  CCE31226.1 395 DPVHEIEFSTVSQSLPPKWVSWLDAAaTPLTPRSGEENpdaslddaGVPDDVRDILDSGGVDPREWVAEWLEDTLNLSVGVVAQRYVARRMGV 487
                 ************************9867888887777788899999**********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3976.27
//
Query:       CCE31227.1  [L=381]
Description: probable cis-prenyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-80  270.4   0.0    1.7e-80  269.8   0.0    1.2  1  Prenyltransf  Putative undecaprenyl diphosphate synthase
  ------ inclusion threshold ------
       0.16   11.4   0.0        0.3   10.5   0.0    1.4  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> Prenyltransf  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.8   0.0   1.9e-84   1.7e-80       2     222 ..      46     361 ..      46     363 .. 0.83

  Alignments for each domain:
  == domain 1  score: 269.8 bits;  conditional E-value: 1.9e-84
                   E--HHHHHHHTT.S-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEGGGGGS-HHHHHHHHHHHH...HHHHHHHHHHHHHT.TEEEEEESSGGG CS
  Prenyltransf   2 mDGNrRwAkkrgleereeGhkaGaealkeilelclelgvkvvtvYafSteNfkRskeevdalmellk...eellkeelkellke.gvrvrviGdlel 94 
                   mDGNrR+Ak+r++e++e Gh++G+eal++i+e+c+++gvkv+tvYafS+eN++R+k+ev+ lm+l+k   e+l++ +  ++l++ g++vrv+G++e+
    CCE31227.1  46 MDGNRRYAKSRRMETVE-GHHRGFEALARIMEICYKCGVKVITVYAFSVENYNRPKHEVEGLMQLAKvklEQLTTYG--DILDRyGACVRVLGQREM 139
                   9***********88888.************************************************97766666666..888888************ PP

                   S-HHHHHHHHHHHHHHT.TTTSEEEEEEEEE-HHHHHHHHHHHHHHTT................................................. CS
  Prenyltransf  95 lpedvlealekaeeatkknnkklvlniavnYgsrdeiveavrelvkeks................................................ 143
                   +++dvle ++ka+++tk+nnk +vlni+++Y+sr+ei++a+r++v +                                                  
    CCE31227.1 140 IRQDVLEVVDKAVARTKHNNK-TVLNICFPYTSRAEITTAIRNTVMDFLdppppknvpfspsrirqkilstqldgkeplptivdepveddppiasvg 235
                   *****************8888.**********************99988888888888888888888888888888888888888888877777777 PP

                   ................................SSSG...................GGHSHHHHHCTSTT..TSSS-SEEEEESS--S-TTSSTTTTT CS
  Prenyltransf 144 ...............................eekkk...................eeideetlekhlytakalpdpDlliRtsGeeRlSnFllwqla 190
                                                  +   +                   e+i++e+l++h+yta++ p+++l++RtsG+eRlS+F+lwq +
    CCE31227.1 236 dprklqeeeaegeeeedcdvgdgsssatllpD---SpkrrhrgspynssssppspESITTEMLNNHMYTAAD-PPLELFVRTSGVERLSDFMLWQ-C 327
                   77776665555544444444444333333330...0333334444444444555555566*********888.**********************.6 PP

                   T-E..EEEESSSGGG--HHHHHHHHHHHHHCHHH CS
  Prenyltransf 191 yse..lyfldvlWPdfskedllealleyqkrerr 222
                   +++  ++fld+lWPdf+ +++++++le+q+r+++
    CCE31227.1 328 HQDtqIVFLDCLWPDFDLQHFIWVMLEWQWRQKQ 361
                   66669**************************987 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.3e-05       0.3      61     103 ..      63     104 ..      39     163 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.3e-05
                   TTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCC...GBCTTTSGHH CS
  AP_endonuc_2  61 rearreesvdalkraielaaaLGapllvlhpGt...agagpkgsee 103
                   +     + ++al r +e+++++G++++++ + +   +  +pk + e
    CCE31227.1  63 G---HHRGFEALARIMEICYKCGVKVITVYAFSvenY-NRPKHEVE 104
                   2...34479*******************997766531.23333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3033.83
//
Query:       CCE31228.1  [L=1036]
Description: uncharacterized protein CPUR_05079 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-09   35.9   2.2    3.7e-09   35.9   2.2    3.8  4  Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domai
  ------ inclusion threshold ------
      0.041   14.1   0.1       0.12   12.7   0.1    1.7  1  TTSSLRR         Type III secretion system leucine rich repeat


Domain annotation for each model (and alignments):
>> Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.26   2.3e+03      94     114 ..     449     469 ..     438     474 .. 0.80
   2 ?   -3.9   0.0      0.48   4.3e+03     186     207 ..     522     543 ..     512     551 .. 0.79
   3 ?   -2.3   0.0      0.16   1.4e+03     254     287 ..     580     611 ..     576     640 .. 0.77
   4 !   35.9   2.2   4.1e-13   3.7e-09     361     489 ..     723     900 ..     715     902 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.26
                     EHHHHHHHHHHHHHH-HHHHH CS
  Glyco_hydro_63  94 FlWDeGFhqllilkwdvdltl 114
                       WD  Fh +++   d d++ 
      CCE31228.1 449 AAWDSAFHCIPLAMIDPDFAK 469
                     46************9999876 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.48
                     HHHHHHHHHHHHHHHHHHHHHT CS
  Glyco_hydro_63 186 leflkklyprlkkwfewfrktq 207
                     l+fl++++ +l   f+w+ + +
      CCE31228.1 522 LDFLERVFQKLLLNFTWWVNRK 543
                     6899***********9997765 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.16
                     HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
  Glyco_hydro_63 254 DlrsWvalaakslksiaellgeeeekekyaktek 287
                     D   W+a+   s+ +ia  l ++ +   y+++++
      CCE31228.1 580 DSTGWMAFYCLSMLNIALELAKHRRI--YEDIAS 611
                     7889**********999888776654..555544 PP

  == domain 4  score: 35.9 bits;  conditional E-value: 4.1e-13
                     T-THHHHHHHHHH-TTTTEETTEEBSB-T...TSTTTT-......TT-S...............SSS-B-HHHHHHHHHHHHHH-.......... CS
  Glyco_hydro_63 361 dsekleklldlikdpeelwsdyGlrslsk...ksslygkrnt.ehdenY...............WrgpiWininylilsalkhys.......... 426
                     + ++l+++l+ + d++e++sd+G+rslsk   ++++ ++ n  e +  Y               WrgpiW+ +n+l++++l++y+          
      CCE31228.1 723 SKDRLQQILKRMLDEDEFFSDHGIRSLSKyhkDHPFSMEVNGqEFKVGYvpgdsdsglfggnsnWRGPIWLCVNFLLVESLQRYYlfygpefqve 817
                     4569************************833123455666642333222222222233333333*********************8999999777 PP

                     ............--SS-.--HHHHHHHHH...H.....HHHHHHHHHHHHHTSS--SEE-TTT--EESSSS-TTGGGGHHHHH CS
  Glyco_hydro_63 427 ............kvegpykekakeiykeL...r.....snlvnnivkqyketGfvweqYddktGkgkgakeFtGWtslvvlim 489
                                 kv+ + +++++++++     r     +n v +  +++k+  +++e +d  tG+g ga++  GWt l+  ++
      CCE31228.1 818 cptgsgdymhlgKVAEEIQHRLQHLFARTddgRrsindKNDVLDFDEHWKDYLWFHEFFDGDTGRGLGATHQCGWTGLIARMI 900
                     77666655555444444577777777543222312111344445567999999999**********************98775 PP

>> TTSSLRR  Type III secretion system leucine rich repeat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.3e-05      0.12      22      48 ..     385     412 ..     375     413 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
                 XXXXX....--HHHHHHHHHHHHHTS-T CS
     TTSSLRR  22 sspaeqga.qteeeYlaaWseWernapp 48 
                 + +a +g   t+++Y+ +W++W++  p+
  CCE31228.1 385 QRQAFSGMmWTKQHYYFIWDQWANGDPA 412
                 45555555789***********997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1036 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.23s 00:00:00.93 Elapsed: 00:00:00.40
# Mc/sec: 7729.36
//
Query:       CCE31229.1  [L=227]
Description: probable oligomycin sensitivity conferring protein (ATP5) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-45  152.9   3.0      1e-44  152.7   3.0    1.1  1  OSCP      ATP synthase delta (OSCP) subunit
  ------ inclusion threshold ------
      0.012   15.7   1.0      0.025   14.7   1.0    1.6  1  DUF1542   Domain of Unknown Function (DUF1542)
      0.013   15.6   0.3      0.026   14.6   0.3    1.6  1  DUF148    Domain of unknown function DUF148
      0.098   12.7   0.3        1.1    9.3   0.0    2.1  2  DUF1539   Domain of Unknown Function (DUF1539)
       0.16   12.4   2.0       0.18   12.2   0.6    1.7  2  DUF3519   Protein of unknown function (DUF3519)
        9.6    6.9   9.5         48    4.6   9.5    1.9  1  ABATE     Putative stress-induced transcription regulator


Domain annotation for each model (and alignments):
>> OSCP  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   3.0   3.4e-48     1e-44       4     172 .]      50     223 ..      47     223 .. 0.94

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 3.4e-48
        OSCP   4 rYAkAlfelAkekgaleeveeelealeavlaedkklaellsnpavsaeekkdlleelfke..klseavknflkllaenkRlalLpeiaeefeellaear 100
                  YA+Al+++A ++++l+ +++ l++l+a+l++d kl+e+l+ p++++e+k+++++el+k+     e+vkn+l+ laen+Rl++L+ ++ +f el+ ++r
  CCE31229.1  50 IYASALYTAAAKSSTLDPTAKALQTLNALLEKDTKLNEILQAPTLTREDKSAVINELAKQagVGGETVKNLLAALAENNRLGYLKGVCVKFGELMSASR 148
                 6***********************************************************744489********************************* PP

        OSCP 101 giveaeVtsavpLtdeqlekleaal...akklgkkkvkleekvdpsliGGvvvkvgdkviDgSvkgkLeklkeqL 172
                 g+ve +Vtsa+ L++++l++le+a+   + + + kk+k++++v++++iGG+vv+vgd++iD Sv+++++k+++ L
  CCE31229.1 149 GEVELKVTSAQRLDNKTLSRLETAVmksEYVGSGKKLKVTNEVNSEIIGGLVVEVGDRTIDLSVSSRIAKMNKLL 223
                 *************************76555556679***********************************9865 PP

>> DUF1542  Domain of Unknown Function (DUF1542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.0   8.4e-06     0.025      13      42 ..      81     110 ..      67     119 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.4e-06
     DUF1542  13 aeekkaeInnnpnaTdeEKqaainkvnaal 42 
                  ++k +eI ++p++T e K a in++ +++
  CCE31229.1  81 KDTKLNEILQAPTLTREDKSAVINELAKQA 110
                 46899********************99876 PP

>> DUF148  Domain of unknown function DUF148
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.3   8.7e-06     0.026      57      94 ..      73     110 ..      56     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.7e-06
      DUF148  57 avisnLssvqekleaIldnkslTrkeqkeaieelkkqy 94 
                 + ++ L + ++kl++Il+  +lTr+++ + i+el+kq 
  CCE31229.1  73 QTLNALLEKDTKLNEILQAPTLTREDKSAVINELAKQA 110
                 4566677999************************9985 PP

>> DUF1539  Domain of Unknown Function (DUF1539)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00037       1.1      52      95 ..      62     108 ..      47     122 .. 0.77
   2 ?    1.3   0.1      0.11   3.3e+02      54      95 ..     151     193 ..     141     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00037
     DUF1539  52 esseveseeaqalfrstlk...kllelLkdptiskekKlellkyias 95 
                 +s  +   +a ++ +++l    kl+e+L+ pt ++e K+ ++++ a 
  CCE31229.1  62 SSTLDPTAKALQTLNALLEkdtKLNEILQAPTLTREDKSAVINELAK 108
                 555555566666777777522279*******************9996 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.11
     DUF1539  54 seveseeaqalfrstlkklle.lLkdptiskekKlellkyias 95 
                  e +   aq l + tl +l + ++k   +   kKl++ +++ s
  CCE31229.1 151 VELKVTSAQRLDNKTLSRLETaVMKSEYVGSGKKLKVTNEVNS 193
                 56777889999999999996515678889999*****999987 PP

>> DUF3519  Protein of unknown function (DUF3519)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   6.1e-05      0.18      69     101 ..      61      93 ..      51      96 .. 0.88
   2 ?   -2.5   0.0       2.2   6.7e+03      46      65 ..     159     178 ..     155     190 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.1e-05
     DUF3519  69 nsaeenpTqkpLtsQedLlkksenlnettpept 101
                  s + +pT+k+L++   Ll k  +lne+ + pt
  CCE31229.1  61 KSSTLDPTAKALQTLNALLEKDTKLNEILQAPT 93 
                 677889*********************999876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
     DUF3519  46 dyrdnsesletsplktkhel 65 
                 +++dn+ ++  ++   k+e+
  CCE31229.1 159 QRLDNKTLSRLETAVMKSEY 178
                 47888888888887666666 PP

>> ABATE  Putative stress-induced transcription regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   9.5     0.016        48      50     119 ..      14     125 ..       3     127 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.016
                 ..HHHHHHHHH..HHHHHTHHHH....................................HHHHHHH......HHS----EEEE-TTS-E.......... CS
       ABATE  50 elararaLRea..lrallaaaaag...........................dpppaaalaalnall......aaappaprLvrhddgpvdrardwhl.l 112
                 + +ra+aLR+a  +r ++aaa++                             +p a al++lnall       +   ap+L+r+d+  v  + ++++  
  CCE31229.1  14 APQRAVALRAAtpVRSFAAAATTNsqppiavfgldgiyasalytaaaksstLDPTAKALQTLNALLekdtklNEILQAPTLTREDKSAVINELAKQAgV 112
                 348999999996568888887777889999999999999999999999988888899********6555555888899999999987777665555544 PP

                 .......EEESTT CS
       ABATE 113 a......llatlA 119
                        lla+lA
  CCE31229.1 113 GgetvknLLAALA 125
                 4777777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1796.13
//
Query:       CCE31230.1  [L=847]
Description: related to lariat-debranching enzyme [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-69  232.5   0.0    2.6e-68  229.3   0.0    2.1  2  Mob1_phocein  Mob1/phocein family
      1e-42  145.9   0.0    1.1e-41  142.5   0.0    2.6  2  DBR1          Lariat debranching enzyme, C-terminal domain
    1.9e-05   25.3   0.6    3.2e-05   24.5   0.6    1.4  1  Metallophos   Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Mob1_phocein  Mob1/phocein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.097   5.8e+02      65     104 ..     494     540 ..     485     558 .. 0.68
   2 !  229.3   0.0   4.3e-72   2.6e-68       3     165 ..     666     831 ..     664     835 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.097
                   xxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxx RF
  Mob1_phocein  65 wadee........vkkpvklsApeYidllmdwiesqlnd......lfpskagsp 104
                   w+de+        v ++ +++Ap Y+  + + +++q ++              +
    CCE31230.1 494 WVDENivakrklaVPENFEITAPPYVPGTPEIVQQQPDEytnpqtA-------A 540
                   6665455555555677789*****************9996333331.......2 PP

  == domain 2  score: 229.3 bits;  conditional E-value: 4.3e-72
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
  Mob1_phocein   3 tlgsgdlkeavklPkgedlneWlavhvvdffneinllygtisefcteqscptmsagpkyeYlwade.evkkpvklsApeYidllmdwiesqlnd..l 96 
                   tlg g+l+++vklP+ged+neWlav++vdf+n+inllyg+i+efc++qscp+m+a++++eYlw+d+ ++k+p+k++Ap Yi++lm w++s++++  +
    CCE31230.1 666 TLGGGSLRKVVKLPEGEDENEWLAVNMVDFYNQINLLYGAITEFCSPQSCPEMKATDEFEYLWQDNeNYKRPTKMPAPAYIEQLMAWVQSNIDNesV 762
                   78899************************************************************955***************************** PP

                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein  97 fpskagspfpknflkvvkkilkrlfrvyaHiYihHfeeiaeleleahlntcfkhfvlfvkeFkLidkke 165
                    psk+g+pfpk+f + v++i+kr++rvyaHiY+hH+  i+el+le+hlnt+fk++vlf++e++L + ++
    CCE31230.1 763 LPSKIGVPFPKSFPALVRQIFKRMYRVYAHIYCHHYPVIRELGLEPHLNTSFKQYVLFIDEHSLASGRD 831
                   ***************************************************************987765 PP

>> DBR1  Lariat debranching enzyme, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.5   0.0   1.9e-45   1.1e-41       1     132 [.     404     543 ..     404     549 .. 0.92
   2 ?   -0.5   0.0      0.26   1.6e+03      65      96 ..     734     761 ..     714     781 .. 0.67

  Alignments for each domain:
  == domain 1  score: 142.5 bits;  conditional E-value: 1.9e-45
        DBR1   1 nktTrFLALDKclpkrdFLqvleiese.....aaeekeeeskkleLeyDpewLaItratnkllslsrsqaklpedk.eaelaelieeelawveenivek 93 
                 nk++rF++LDKcl +r+FLq + i++       ++++++ s++++L+yDpewLaItr+++++ls+ +++a++ +d  e+++a+li++e+awv+eniv+k
  CCE31230.1 404 NKQVRFVSLDKCLRGRQFLQTCLIKPFqssgsPQTHRDKASRRYSLHYDPEWLAITRVFHDTLSFGDRSAQISPDLgEEHYAPLIDAERAWVDENIVAK 502
                 799**********************9999999889999999************************666677777777********************** PP

        DBR1  94 gklkipenFertaP...ageeeaeekeqpkeytNpQteafce 132
                 +kl++penFe+taP   +g++ + +++qp+eytNpQt+af e
  CCE31230.1 503 RKLAVPENFEITAPpyvPGTP-EIVQQQPDEYTNPQTAAFSE 543
                 *************87754434.699***************76 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.26
        DBR1  65 aklpedkeaelaelieeelawveenivekgkl 96 
                  k p+  +  + + ie+ +awv+ ni  +++ 
  CCE31230.1 734 YKRPT--KMPAPAYIEQLMAWVQSNI--DNES 761
                 33343..55666789999*******9..3333 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.6   5.4e-09   3.2e-05       2     203 ..      12     240 ..      11     241 .. 0.62

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 5.4e-09
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHH...TTESEEEEEST...SSSSS........HHHHHHHHHHHHHHHH......TSEEEEEC-TTSCHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllre...ekpdlvllaGD...lvdrg........dlekellellaalvky......pipvylllGNHegfee 79 
                  r++v g  H     g ld++ +++ ++ ++   +++d++++ GD   +            + + ++ +l +++  y      p   +++ GNHe    
   CCE31230.1  12 RVAVEGCGH-----GTLDAIYDAVGKACKDrgwNDVDILIIGGDfqaV---RnaadltimSCPVKYRRLGDFKDYYsgkrkaPYLTIFVGGNHE---- 97 
                  566667778.....89999999997774445779**********5541...34556677844444555555555555566335555********.... PP

                  HHHHHHH.HHHHHHHHHEHH.....HCEEETSEEEEEETTE..EEEEEEESECEEE.THHHHHHHHHHHSCHHHHCC.............HHHHHHHH CS
  Metallophos  80 ellnkyg.ylgifsepwrsd.....aevfnnlplaslgsgs..lkvlllhGgspel.lvsldklgslnleleapepg.............dewlkdle 155
                   ++++++ y+g + +p+ ++     +  f+ l +a+  + +  +++   h +   +   + d+++s+ + +e++  +             ++w ++  
   CCE31230.1  98 ASSHLWElYYGGWVAPNIYYmgaanVLRFGPLRIAGMSGIWkgFDYNRPHLE---RlPFNKDDVKSFYHVREVDVRKlllmrtqvdvgisHDWPRH-- 190
                  4444433033333444444445666555666666663333244333333333...13446778888888888888765544444445566666666.. PP

                  HHTTCSEEEEEESSESS..CSSSCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 156 krekadwvivlgHsply..rgsgylfgdealedllkkygvdlvisGHtHv 203
                   ++++d   ++  +p    ++   + g+ a+e + ++ ++ +++s+H H+
   CCE31230.1 191 IEKHGDSAELFRKKPFFreDSEKGQLGSVAAEYVMDRLRPPYWFSAHLHT 240
                  5555555555555555599999999999999999***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 5843.67
//
Query:       CCE31231.1  [L=288]
Description: uncharacterized protein CPUR_05082 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-20   73.6   0.0    2.3e-20   73.1   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    3.5e-11   43.7   0.0    1.2e-10   42.0   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
    1.7e-10   40.9   0.0    3.4e-10   39.9   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
    1.6e-08   35.2   0.0      3e-08   34.3   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    1.7e-06   28.6   0.0    2.9e-06   27.8   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    0.00012   21.5   0.0    0.00043   19.7   0.0    2.0  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.028   14.1   0.0      0.041   13.6   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
      0.053   13.3   0.0       0.11   12.2   0.0    1.5  1  DUF938           Protein of unknown function (DUF938)
       0.22   11.0   0.0       0.38   10.3   0.0    1.4  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   1.2e-23   2.3e-20      22     164 ..      63     217 ..      41     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 1.2e-23
  Methyltransf_23  22 aggrvLdiGcGtGillevlren..gfsvtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkpg 112
                      a+  vL+i++GtGi++ ++++    ++v+g D+s ++ +  + + k+  +d ++e   ae  + +d+I++r++l  + + p +lr++++ll+pg
       CCE31231.1  63 APRQVLEIATGTGIWALEYATLnpACHVVGTDISAIQRPHSRpNVKFVLHDFENEAWPAEYGRDYDYIHCRYTLICFNSTPTVLRRAFELLRPG 156
                      5679***********99996652346**********999977444444444444444555777******************************* PP

  Methyltransf_23 113 Gylllseplasl......kedrllldw.lylvpag..rhisffsarslkelleeaGlevve 164
                      G++++ ep +s        e  ++ +w  ++v+    + + +    ++ ++l+eaG+ +v+
       CCE31231.1 157 GWIEFYEPSQSFvrlgksLEGTAFGKWvDLIVEVArrQGRDWTKTVHYTTWLREAGFVNVT 217
                      ********99889999765888888887666655544777******************997 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   5.8e-14   1.2e-10       1      97 []      67     157 ..      67     157 .. 0.85
   2 ?   -2.0   0.0         3     6e+03      57      90 ..     239     273 ..     215     275 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 5.8e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG..BSSSTT.TEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed..lpfedg.sfDlvvssgalhhlsdedlekalkeiar 91 
                      vL++++GtG ++l+ a+  ++++v+g+Dis+ +  + ++     ++nv+fv +d+e+  +p e g  +D+++++++l +++   ++++l+++++
       CCE31231.1  67 VLEIATGTGIWALEYATLNPACHVVGTDISAIQ--RPHS-----RPNVKFVLHDFENeaWPAEYGrDYDYIHCRYTLICFN--STPTVLRRAFE 151
                      9***************99779********9644..3333.....4589*******654599776669*******9988877..5789******* PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      +L+pgG
       CCE31231.1 152 LLRPGG 157
                      *****9 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3
                      GBSSSTTTEEEEEEEST.GGG.SSHHHHHHHHHHHH CS
  Methyltransf_25  57 dlpfedgsfDlvvssga.lhh.lsdedlekalkeia 90 
                      +l+f++ ++ +v s g+ l   ++de+ ++a++e a
       CCE31231.1 239 RLSFKN-EYAMVSSLGSaLRKaVPDEEEAQAIEEGA 273
                      456654.77788887777776578888788887755 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.7e-13   3.4e-10       6     113 ..      66     165 ..      63     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.7e-13
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsnevlnaladpdkileei 97 
                      +vl++++GtG  ++e a +l+p ++vvG Dis  ai++  ++       nv+F   d+e+ +  + +  + +D+i+++ +l ++++ + +l+++
       CCE31231.1  66 QVLEIATGTGIWALEYA-TLNPACHVVGTDIS--AIQRPHSR------PNVKFVLHDFENeAWPAeYG-RDYDYIHCRYTLICFNSTPTVLRRA 149
                      89***************.*************8..68887776......69**********54444455.9************************ PP

  Methyltransf_31  98 ervlkpggilliedpr 113
                      +++l+pgg +   +p+
       CCE31231.1 150 FELLRPGGWIEFYEPS 165
                      ********88777776 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.5e-11     3e-08       1      99 []      68     159 ..      68     159 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.5e-11
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      Lei +GtG  + + +  +p ++++g+Dis+ + ++ +   ++   ++++n  + a+      g+  +D++++  +l +++ +  vl+++ +lL+
       CCE31231.1  68 LEIATGTGIWALEYATLNPACHVVGTDISAIQRPHSRPNVKFVL-HDFENEAWPAEY-----GR-DYDYIHCRYTLICFNSTPTVLRRAFELLR 154
                      8****************************988854444444433.444444444444.....33.9**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CCE31231.1 155 PGGWI 159
                      ***86 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.4e-09   2.9e-06       1      95 [.      68     160 ..      68     161 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.4e-09
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT...-EEEEEEES-CCC-CCHHHHHHHHHHHEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfedn...sfDlvvssevlhhvedpekalkeiaRvLk 89 
                      L++++GtG+ a ++a     ++vvg+D+s+ ++  +     ++  +v+fv  d+e+   + +    +D + ++ +l  ++    +l+ +  +L+
       CCE31231.1  68 LEIATGTGIWALEYATLNpaCHVVGTDISAIQRPHS-----RP--NVKFVLHDFENEAWPAEygrDYDYIHCRYTLICFNSTPTVLRRAFELLR 154
                      799************55567*********9998333.....22..4899******85555543358**************************** PP

                      EEEEEE CS
  Methyltransf_11  90 pgGllv 95 
                      pgG++ 
       CCE31231.1 155 PGGWIE 160
                      ***985 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.2e-07   0.00043      43     161 ..      59     171 ..      43     227 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.2e-07
                      --S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE-..-TTT-TTS-.T-EEEEEEES-GGG-S-HH CS
  Ubie_methyltran  43 vavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqa..naeeLpfed.dsfDvvtvsfGlrnvtDkl 133
                        v  +++vl++a+Gtg +a++ +  ++   +vv+ Di++        +   ++  n++f+    + e+ p e    +D++   + l  +  ++
       CCE31231.1  59 APVGAPRQVLEIATGTGIWALEYAT-LNPACHVVGTDISAIQ------R--PHSRPNVKFVLHdfENEAWPAEYgRDYDYIHCRYTLICFNSTP 143
                      34456779**************975.68999*******9742......2..333446666655114677887775689**************** PP

                      HHHHHHHHHEEEEEEEEEEEE----SHH CS
  Ubie_methyltran 134 kaLkeayrvlkpGGrlvvlefskvelpl 161
                      ++L+ a+  l+pGG +   e s+  + l
       CCE31231.1 144 TVLRRAFELLRPGGWIEFYEPSQSFVRL 171
                      *****************99999876654 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.1e-05     0.041      47      82 ..      64      99 ..      47     122 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
  Methyltransf_16 47 klsvlELGsGtGlvGlavaellpeakviltDleell 82
                     +++vlE+  GtG+  l  a+l p ++v+ tD++ ++
       CCE31231.1 64 PRQVLEIATGTGIWALEYATLNPACHVVGTDISAIQ 99
                     679*****************************9854 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.7e-05      0.11      27     142 ..      65     164 ..      58     172 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.7e-05
      DUF938  27 ervLEiasGtGqHAvffApalpnlkwqpsdqdeelresiaawadelalsnlkpPleldvtaevapvereappapasidailsinllHispwsaveglfa 125
                 ++vLEia+GtG  A  +A++ p  +   +d          a ++  + +n+k+ l+ d  +e +p e       + +d+i +  +l    ++++ ++++
  CCE31231.1  65 RQVLEIATGTGIWALEYATLNPACHVVGTDIS--------AIQRPHSRPNVKFVLH-DFENEAWPAE-----YGRDYDYIHCRYTL--ICFNSTPTVLR 147
                 47*****************9999998888854........4445666777777665.7777777777.....56777777777765..45666677777 PP

      DUF938 126 gagellkkkavlviYGP 142
                  a ell++++ +  Y P
  CCE31231.1 148 RAFELLRPGGWIEFYEP 164
                 77777777777777766 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00019      0.38      15      66 ..      40      98 ..      37     122 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00019
                S--HHHHHHHHHCHCC.......TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHH CS
         MTS 15 klDkGsklLletlpke.......lsgkvlDlGcGaGvlgaalakespeaevtlvdvdar 66
                +lD   kl l+ ++ +       + ++vl +++G+G+ +++ a  +p  +v+ +d++a 
  CCE31231.1 40 RLDSQHKLYLTVMEGNlgcapvgAPRQVLEIATGTGIWALEYATLNPACHVVGTDISAI 98
                667777777777777766666666789*********************99999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2213.09
//
Query:       CCE31232.1  [L=489]
Description: related to oxalate decarboxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-41  141.0   0.0    7.3e-22   77.6   0.0    2.2  2  Cupin_1          Cupin
    7.3e-24   83.3   0.0    1.1e-12   47.4   0.0    2.4  2  Cupin_2          Cupin domain
    1.8e-07   30.7   0.0    0.00076   19.1   0.0    2.5  2  Cupin_3          Protein of unknown function (DUF861)
    6.6e-07   29.3   0.0      0.003   17.5   0.0    2.2  2  MannoseP_isomer  Mannose-6-phosphate isomerase
    8.7e-05   22.4   0.1       0.15   12.0   0.0    2.6  3  AraC_binding     AraC-like ligand binding domain
  ------ inclusion threshold ------
      0.051   13.3   0.0        2.3    7.9   0.0    2.4  2  Cupin_6          Cupin
       0.08   12.6   0.0       0.15   11.6   0.0    1.4  1  3-HAO            3-hydroxyanthranilic acid dioxygenase
      0.089   12.1   0.0       0.15   11.4   0.0    1.3  1  CDO_I            Cysteine dioxygenase type I


Domain annotation for each model (and alignments):
>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   3.2e-25   7.3e-22       3     144 ..     142     276 ..     140     280 .. 0.89
   2 !   61.2   0.0   3.6e-20     8e-17      11     120 ..     331     435 ..     322     459 .. 0.77

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 3.2e-25
                 CGGSSEEEEETTEEEEEESTTTSTTTHSSTEEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEE CS
     Cupin_1   3 llepsptieseggrvteansenlpglntlgisaarvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqyn 101
                 l+  +p ++ ++g+ ++ n ++lp     +++ +   lep++++++h+h +a+e+a +l+G++rv  v  +   ++f+ +l+eGdv+ +P+g++h++++
  CCE31232.1 142 LSHNRPGYKGKAGWARQQNKSHLP--AAKQMAGVDMKLEPHAYRELHWH-SANEWALILKGCARVAAVNDES--QSFTDDLCEGDVWFFPSGVPHAIQA 235
                 66678889****************..88889999***************.**************88888887..9************************ PP

                 ESSSSEEEEEEEESSSTT-EEHSCEHHHHHTSSBHHHHHHHHT CS
     Cupin_1 102 sgdepavaivvfdtnnpgnqsvlaalfsvlpaLdrevlakafq 144
                    +++v++ ++ ++ +  ++ ++  ++++  ++revl k+f+
  CCE31232.1 236 F--DKGVEFLLVFDSGDFDENGTFLISNMFARMPREVLSKNFK 276
                 *..788888877777777776666678888888*********7 PP

  == domain 2  score: 61.2 bits;  conditional E-value: 3.6e-20
                 EETTEEEEEESTTTSTTTHSSTEEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEE CS
     Cupin_1  11 eseggrvteansenlpglntlgisaarvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepava 109
                 e  gg+v+++++ ++p     g saa v l+pg+++++h+h+ + e+ y lqG+gr+ +    n     + +++ Gdv ++P+  +h++ n+g +  ++
  CCE31232.1 331 EAPGGTVKVIDPTTFP--IAAGFSAALVTLKPGAMREIHWHTTSDEWSYFLQGSGRATIYAAPN--AGQTFDFTSGDVGYIPKDNAHYIENTG-TGDLV 424
                 668*************..788999999999**************************99999998..667777*********************.55555 PP

                 EEEEESSSTT- CS
     Cupin_1 110 ivvfdtnnpgn 120
                 +  +  +++ +
  CCE31232.1 425 FLEVLLAPKFT 435
                 54444444433 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0     1e-11   2.2e-08       3      70 ..     175     245 ..     173     246 .. 0.88
   2 !   47.4   0.0     5e-16   1.1e-12       2      70 ..     355     428 ..     354     429 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1e-11
                 EEEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTE....EEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2   3 velppGesapshrHpgedeffyVleGegelt.vdge....eveleaGdsvyfpagtpHrfrNtgdeparllvv 70 
                 ++l+p++  + h+H+ + e+  +l+G +++  v++e    + +l +Gd+++fp+g+pH++    d+ +++l v
  CCE31232.1 175 MKLEPHAYRELHWHSAN-EWALILKGCARVAaVNDEsqsfTDDLCEGDVWFFPSGVPHAIQA-FDKGVEFLLV 245
                 889**************.******************99999999**************9954.5556666655 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 5e-16
                 EEEEETTEEEEEECSSSEEEEEEEEESEEEEE.EC....TEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2   2 lvelppGesapshrHpgedeffyVleGegelt.vd....geeveleaGdsvyfpagtpHrfrNtgdeparllvv 70 
                 lv+l+pG++ + h+H+ +de+ y l+G g+ t +     g++++ + Gd+ y+p+   H+++Ntg++++++l v
  CCE31232.1 355 LVTLKPGAMREIHWHTTSDEWSYFLQGSGRATiYAapnaGQTFDFTSGDVGYIPKDNAHYIENTGTGDLVFLEV 428
                 89******************************5559999********************************987 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0005       1.1      25      60 ..     190     229 ..     183     241 .. 0.76
   2 !   19.1   0.0   3.4e-07   0.00076      10      60 ..     354     411 ..     348     427 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0005
                 SEEEEEEEECEEEEEET..TTEE..EEEETTEEEEE-TTE CS
     Cupin_3  25 edEfcyileGevkvtpe..gget..velraGDlvvlpkgl 60 
                 ++E + il+G  +v++   +++     l +GD++++p g 
  CCE31232.1 190 ANEWALILKGCARVAAVndESQSftDDLCEGDVWFFPSGV 229
                 489999****8888765335555556799********997 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 3.4e-07
                 EEEEEECE...EEEECESSEEEEEEEECEEEEEET....TTEEEEEETTEEEEE-TTE CS
     Cupin_3  10 giwectpG...kfrltyeedEfcyileGevkvtpe....ggetvelraGDlvvlpkgl 60 
                  ++  +pG   + +++ + dE  y+l+G  + t       g+t+ +  GD+ ++pk+ 
  CCE31232.1 354 ALVTLKPGamrEIHWHTTSDEWSYFLQGSGRATIYaapnAGQTFDFTSGDVGYIPKDN 411
                 55555666222358999*********9877665333366****************985 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00034      0.76      79     127 ..     184     238 ..     169     255 .. 0.72
   2 !   17.5   0.0   1.3e-06     0.003      61     135 ..     349     428 ..     322     436 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00034
  MannoseP_isomer  79 qkhhhraehW.vvvkGtakvtv.ddevl....llkenestyiplgaihrlenpGk 127
                      + h+h a+ W +++kG+a+v   +de+      l e +  + p g+ h+++   k
       CCE31232.1 184 ELHWHSANEWaLILKGCARVAAvNDESQsftdDLCEGDVWFFPSGVPHAIQAFDK 238
                      5699***9995578*****96424443311224778899999***9999987766 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.3e-06
  MannoseP_isomer  61 eryqvkritvkPgeklslqkhhhraehWvvvkGtakvtv.....ddevlllkenestyiplgaihrlenpGkipleliev 135
                        +    +t+kPg++  ++ h    e    ++G  + t+       +++ +++ +  yip+++ h +en G  +l ++ev
       CCE31232.1 349 AGFSAALVTLKPGAMREIHWHTTSDEWSYFLQGSGRATIyaapnAGQTFDFTSGDVGYIPKDNAHYIENTGTGDLVFLEV 428
                      56778889**********999988877677777655553212225789***************************99998 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   6.6e-05      0.15      14      63 ..     180     235 ..     172     245 .. 0.87
   2 ?   -3.8   0.0         5   1.1e+04      35      51 ..     322     338 ..     316     343 .. 0.67
   3 !    7.7   0.0    0.0014       3.2      19      93 ..     367     447 ..     361     472 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
                   -SEEE.ETT-SEEEEEEEEE-EEE.EETTEE....EEE-TT-EEEE-TTS-EEEEE CS
  AraC_binding  14 hsfpp.hvhdeyvihyvteGtgrl.rlngrt....ydlgpGdlfLlppgepHdyes 63 
                   h++++ h+h+  ++ ++++G +r+  +n++      dl +Gd+ ++p g+pH +++
    CCE31232.1 180 HAYRElHWHSANEWALILKGCARVaAVNDESqsftDDLCEGDVWFFPSGVPHAIQA 235
                   566444******************999999877777999*************9987 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5
                   EEEETTEEEEE-TT-EE CS
  AraC_binding  35 rlrlngrtydlgpGdlf 51 
                   +++ +++ +++++G++ 
    CCE31232.1 322 YHWSQQKPHEAPGGTVK 338
                   34777888888888775 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0014
                   ETT-.SEEEEEEEEE-EEEEE.....TTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG---EEET CS
  AraC_binding  19 hvhd.eyvihyvteGtgrlrl.....ngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegelleriledssilag 93 
                   h+h    ++ y+++G+gr ++     +g+t+d ++Gd+  +p++  H++e  +  ++ +  + + + + + + + +  l +
    CCE31232.1 367 HWHTtSDEWSYFLQGSGRATIyaapnAGQTFDFTSGDVGYIPKDNAHYIENTGTGDLVFLEVLLAPKFTDISVAQWLALTP 447
                   566655578889999998886555557889********************9999888888777777766666666666655 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0     0.001       2.3      37      74 ..     194     234 ..     178     256 .. 0.81
   2 ?    2.8   0.0     0.037        83      33      84 ..     374     425 ..     352     455 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.001
     Cupin_6  37 hvvlrGscwli.dpasgep..vrLsagdvvllpggephvla 74 
                  ++l+G +++  + +++++    L +gdv ++p+g ph+++
  CCE31232.1 194 ALILKGCARVAaVNDESQSftDDLCEGDVWFFPSGVPHAIQ 234
                 68999999999877766444489***************994 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.037
     Cupin_6  33 glalhvvlrGscwli.dpasgepvrLsagdvvllpggephvladspgtaplav 84 
                 + ++++  +G++++   p +g++   + gdv  +p++ +h + +++gt +l  
  CCE31232.1 374 EWSYFLQGSGRATIYaAPNAGQTFDFTSGDVGYIPKDNAHYI-ENTGTGDLVF 425
                 46777888999***9888888********************9.7777766654 PP

>> 3-HAO  3-hydroxyanthranilic acid dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.9e-05      0.15      42     104 ..     179     242 ..     169     261 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.9e-05
                 SB--S-EEE-SS-EEEEEEES.-EEEEEEETTCCCEEEE-TTEEEEE-TT--EEEEE-TT-EEE CS
       3-HAO  42 PnerkdyhleegeeffyqkkG.dmvlkvldegkardivireGeifllParvphsPqrfadsvGl 104
                 P + ++ h + ++e+   +kG   v  v de++     + eG+++++P+ vph+ q f + v +
  CCE31232.1 179 PHAYRELHWHSANEWALILKGcARVAAVNDESQSFTDDLCEGDVWFFPSGVPHAIQAFDKGVEF 242
                 6777899**********99993468889999988766778****************99988764 PP

>> CDO_I  Cysteine dioxygenase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.6e-05      0.15      67     111 ..     349     393 ..     330     418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.6e-05
                 GT-EEEEEEE-TT-B--EE--TT-EEEEEEEES-EEEEEE----S CS
       CDO_I  67 gksellllcWgpGtassvHDHtdsvgalkllaGeLkEtkfAwalk 111
                 +++ + l++  pG   ++H Ht s   +  l+G  + t +A+++ 
  CCE31232.1 349 AGFSAALVTLKPGAMREIHWHTTSDEWSYFLQGSGRATIYAAPNA 393
                 5678999***********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3747.92
//
Query:       CCE31233.1  [L=290]
Description: uncharacterized protein CPUR_05084 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-12   46.8   0.0    5.6e-12   45.8   0.0    1.5  2  Methyltransf_23  Methyltransferase domain
    9.1e-06   26.3   0.0      2e-05   25.3   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
    0.00074   19.3   0.0      0.003   17.4   0.0    1.9  1  Methyltransf_31  Methyltransferase domain
     0.0011   19.7   0.0      0.003   18.2   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
     0.0084   16.7   0.0      0.018   15.6   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.055   13.2   0.0      0.088   12.6   0.0    1.3  1  EutQ             Ethanolamine utilisation protein EutQ


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2   6.1e+03     108     117 ..       4      13 ..       3      39 .. 0.75
   2 !   45.8   0.0   1.9e-15   5.6e-12      44     164 ..      78     208 ..      55     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
  Methyltransf_23 108 llkpgGylll 117
                      llk++Gy++ 
       CCE31233.1   4 LLKDQGYMFY 13 
                      7888888874 PP

  == domain 2  score: 45.8 bits;  conditional E-value: 1.9e-15
  Methyltransf_23  44 gfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqg...kfdlIvlrevlehvpdppellrqiatllkpgGylllseplasl.......ked 127
                       ++vtg D+s  + +   + ++ +++ +d +++a p++    +d+I+lr++   +++ p++lr++++ll+pgG++++ +p+           e 
       CCE31233.1  78 SCHVTGTDISAFQRPH--SLPNLNFVLHDFEKDAWPAQyggDYDYIHLRYTVTCFDSTPAVLRRAFELLRPGGWIEFYDPNH-VylpvdrpLEG 168
                      389******9877776..57777777776665444433445**************************************974.24777775577 PP

  Methyltransf_23 128 rllldwlylvpag..rhi..sffsarslkelleeaGlevve 164
                       +l +w   v +g  r +   f   + +  ++++aG+++v+
       CCE31233.1 169 TALGKWMSSVVEGarR-VgrDFLKPTKYVGWMRDAGFTNVT 208
                      7788898889998753.347*******************98 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   6.6e-09     2e-05      13      99 .]      71     150 ..      56     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 6.6e-09
  Methyltransf_12  13 alleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLkpgGrl 99 
                      +l+ ++p +++tg+Dis+ +        ++  n+n+   ++e++    + gg  +D++++  ++ +++ + +vl+++ +lL+pgG++
       CCE31233.1  71 RLATANPSCHVTGTDISAFQR------PHSLPNLNFVLHDFEKDAWPAQYGG-DYDYIHLRYTVTCFDSTPAVLRRAFELLRPGGWI 150
                      5677779**********9888......6666667777777777777777666.********************************86 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     1e-06     0.003      21     113 ..      72     156 ..      66     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1e-06
  Methyltransf_31  21 laeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsnevlnaladpdkileeiervlkpggilliedp 112
                      la +++p ++v+G Dis++         + + l n++F   d+e+ +  + +    +D+i+ + ++ ++ + +++l++++++l+pgg +   dp
       CCE31233.1  72 LA-TANPSCHVTGTDISAFQ--------RPHSLPNLNFVLHDFEKdAWPAqYG-GDYDYIHLRYTVTCFDSTPAVLRRAFELLRPGGWIEFYDP 155
                      55.66777777777777653........357788**********986556577.99*******************************9877777 PP

  Methyltransf_31 113 r 113
                      +
       CCE31233.1 156 N 156
                      7 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     1e-06     0.003      14      97 .]      71     148 ..      66     148 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1e-06
                      HHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG..BSS.STTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  14 alakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed..lpf.edgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      +la++ ++++vtg+Dis+ +       +  + +n++fv +d+e+  +p    g +D++++++++ +++   ++++l++++++L+pgG
       CCE31233.1  71 RLATANPSCHVTGTDISAFQRP-----H--SLPNLNFVLHDFEKdaWPAqYGGDYDYIHLRYTVTCFD--STPAVLRRAFELLRPGG 148
                      5666656899999999964422.....2..23599*******77558862556*******99999888..678*************9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.2e-06     0.018      19      95 ..      79     151 ..      59     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.2e-06
                      SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCC..TSS-T.T-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  19 arvvgvDlskemlklakekaseegl..kvefvvadaek..lpfed.nsfDlvvssevlhhvedpekalkeiaRvLkpgGllv 95 
                      ++v+g+D+s+ ++              +++fv  d+ek   p +  + +D + ++ +++ ++   ++l+ +  +L+pgG++ 
       CCE31233.1  79 CHVTGTDISAFQRPH---------SlpNLNFVLHDFEKdaWPAQYgGDYDYIHLRYTVTCFDSTPAVLRRAFELLRPGGWIE 151
                      778888887777621.........123578999999984445544359*******************************985 PP

>> EutQ  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.9e-05     0.088      27      77 ..      47      95 ..      27     123 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.9e-05
        EutQ 27 esfkkkvdksGilsvklidvkvkkedrldtgnPkdvvltkdlvtleeskrl 77
                + + k+  +sG  +  l  v++++++rl t+nP++ v+ +d+ + +  ++l
  CCE31233.1 47 KPELKQR-QSGGKGYLL-PVDTDEQERLATANPSCHVTGTDISAFQRPHSL 95
                4455555.455555445.57899******************9888765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2383.02
//
Query:       CCE31234.1  [L=111]
Description: related to Elongin C transcription elongation factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-09   36.9   0.0    4.5e-09   36.3   0.0    1.3  1  Skp1_POZ  Skp1 family, tetramerisation domain


Domain annotation for each model (and alignments):
>> Skp1_POZ  Skp1 family, tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.5e-13   4.5e-09       2      60 ..      10      71 ..       9      74 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.5e-13
                EEEEEETTSCEEEEEHHHHTTSHHHHHHHHCTCCCGT...TCEEETTS-HHHHHHHHHHHHH CS
    Skp1_POZ  2 sivLqSsDgesfeveeavakkSktikhmiedlgdddk...priplpnvtskiLekvieYckh 60
                 ++L+S Dg +fev +++a  S++ik m++   + ++   +r   ++ ++ +L kv+eY ++
  CCE31234.1 10 TVTLVSADGFEFEVLREAALVSPVIKYMLDARSQFSEakdARCVFQEMSGMVLDKVVEYFHY 71
                79***************************966554444469******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 898.84
//
Query:       CCE31235.1  [L=275]
Description: probable RHO1 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-46  158.4   0.0    1.5e-46  158.0   0.0    1.2  1  Ras       Ras family
    1.8e-20   73.3   0.0    3.3e-20   72.5   0.0    1.4  1  Roc       Ras of Complex, Roc, domain of DAPkinase
    9.7e-06   25.1   0.0    6.6e-05   22.4   0.0    2.1  2  Arf       ADP-ribosylation factor family
  ------ inclusion threshold ------
      0.037   13.5   0.0      0.063   12.8   0.0    1.3  1  AAA_7     P-loop containing dynein motor region
       0.16   11.4   0.0       0.27   10.7   0.0    1.3  1  SRPRB     Signal recognition particle receptor beta subunit


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.0   0.0   4.2e-50   1.5e-46       1     160 [.      64     236 ..      64     238 .. 0.95

  Alignments for each domain:
  == domain 1  score: 158.0 bits;  conditional E-value: 4.2e-50
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET..TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd..gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwvee 96 
                 K+v+vGd+++GKt+ll+++ +++F+e+y +T+ +++y++  + +  gk+v+l +wDTAGqee+++lr+l+y +++ i+++++i+  +s++nv  kw+ e
  CCE31235.1  64 KIVVVGDGGCGKTCLLISYSQGYFPEKYVPTV-FENYITYPTHSptGKTVELALWDTAGQEEYDRLRPLSYPETDLIFVCFAIDCPNSLDNVLdKWYPE 161
                 9*******************************.9999987666566**********************************************88***** PP

                 HHHHSTTTSEEEEEEETTTGGG............G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  97 ikrvaeenvpivLvGnKvDlee............kravsteegeelakelglkfletSAktnenveeafeellrei 160
                 + + ++  +p++LvG K+Dl+                v+te+g ++a++++++++e+S k+  +v+e+fe+++ ++
  CCE31235.1 162 VLHFCP-YTPLILVGLKSDLRYkqtciemlktqgLTPVTTEQGLAVADKMDAQYMECSSKEMLGVDEIFERAILTV 236
                 ******.59************999*******99999**********************************988665 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   9.3e-24   3.3e-20       1     119 [.      64     179 ..      64     180 .. 0.88

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 9.3e-24
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHH.HHCH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srs.senl 95 
                 K+v+vGd+g GKt+ll ++ ++ f ek+ +t+  +++t  +++        + k+v+l++WDtaGqe+++ l+pl + e +l+++++     +s ++ l
  CCE31235.1  64 KIVVVGDGGCGKTCLLISYSQGYFPEKYVPTVFENYITYPTHS-------PTGKTVELALWDTAGQEEYDRLRPLSYPETDLIFVCFAidcPNSlDNVL 155
                 9***********************************9986533.......345789***************************9998744644414557 PP

                 HHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  96 keWlkelkkvagkspvilvgnkiD 119
                 ++W+ e+ + ++ +p+ilvg k D
  CCE31235.1 156 DKWYPEVLHFCPYTPLILVGLKSD 179
                 9*********************99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.8e-08   6.6e-05      14      92 ..      62     148 ..      52     230 .. 0.78
   2 ?    0.3   0.1      0.12   4.2e+02      88     131 ..     206     247 ..     199     251 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.8e-08
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEEEEE.....TTEEEEEEEE-SSGGGGGGGGGGCTTESEE..EEEEETT CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt.tvPTigfnveelei.....knlkftvwDvGGqeklRplWknYfektdav..ifvvDsa 92 
                 + +i+++G  + GKt +l  ++++ + +  vPT+  n  +  +     k++++ +wD  Gqe+  +l    +++td +   f +D+ 
  CCE31235.1  62 SKKIVVVGDGGCGKTCLLISYSQGYFPEkYVPTVFENYITYPThsptgKTVELALWDTAGQEEYDRLRPLSYPETDLIfvCFAIDCP 148
                 569*********************9976489**988865544445566***************999999999***975214567764 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.12
                 EEETT-CTTHHHHHHHHHHHCTSGC.CTTSEEEEEEE-TTSTTSS CS
         Arf  88 vvDsadreRleeakeeLkalleeee.lkevallvlaNKqDlpeal 131
                 v D +d + +e +++e   +l  +e  ++++l v+aN    +ea+
  CCE31235.1 206 VADKMDAQYMECSSKE---MLGVDEiFERAILTVVANDRANQEAM 247
                 4566666666666655...45444415688888999988877776 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.8e-05     0.063      31      67 ..      60      96 ..      41     115 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
       AAA_7 31 knkkpvllvGptGtGKtviikdllkkldkekylslti 67
                + +k++++vG+ G+GKt+++ ++ + + +eky+++++
  CCE31235.1 60 AYSKKIVVVGDGGCGKTCLLISYSQGYFPEKYVPTVF 96
                56899*********************999***99876 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.4e-05      0.27       3      60 ..      62     123 ..      60     142 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.4e-05
                 --EEEEE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG...GGTT-S..EEEETT-G CS
       SRPRB   3 kpavllvGlsdsGKTslftrLttdsvkktvtSq..essaalkvksekgsklt..liDfPGhe 60 
                 ++++++vG   +GKT l+   +++ + + ++    e+ +++ ++s  g++++  l D  G+e
  CCE31235.1  62 SKKIVVVGDGGCGKTCLLISYSQGYFPEKYVPTvfENYITYPTHSPTGKTVElaLWDTAGQE 123
                 6789********************66555544335999999887776665551155777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2053.87
//
Query:       CCE31236.1  [L=97]
Description: uncharacterized protein CPUR_05087 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-25   88.1   2.0    4.9e-25   87.5   2.0    1.3  1  DASH_Dad1  DASH complex subunit Dad1
  ------ inclusion threshold ------
      0.024   14.6   0.1      0.038   14.0   0.1    1.3  1  DASH_Dad4  DASH complex subunit Dad4


Domain annotation for each model (and alignments):
>> DASH_Dad1  DASH complex subunit Dad1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   2.0   5.5e-29   4.9e-25       1      55 []      16      70 ..      16      70 .. 0.99

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 5.5e-29
   DASH_Dad1  1 yFerqRdrliqeIaesmeevlnnlnaLNRsLEeviavgkeFesVaaLWssFynvm 55
                yFe qR+++i++Ia s+e+vl n+n+LNRsLEevi++g++F+sV+aLWs+F+nvm
  CCE31236.1 16 YFELQREAIISDIALSFEHVLGNINKLNRSLEEVIKMGNDFSSVEALWSQFENVM 70
                8*****************************************************9 PP

>> DASH_Dad4  DASH complex subunit Dad4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   4.2e-06     0.038       6      56 ..      18      68 ..      16      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.2e-06
   DASH_Dad4  6 eeqqsalLsRIiknvekLnesvvelnkeleeinkkNknvelvsqlwenYqr 56
                e q +a++s I  + e +  ++ +ln++lee+ k  ++ + v  lw+++++
  CCE31236.1 18 ELQREAIISDIALSFEHVLGNINKLNRSLEEVIKMGNDFSSVEALWSQFEN 68
                77889999999999999999**************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1031  (0.0575046); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 768.56
//
Query:       CCE31237.1  [L=250]
Description: probable heat shock protein MGE1 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-46  157.0   5.3    4.8e-46  156.5   5.3    1.3  1  GrpE       GrpE
  ------ inclusion threshold ------
      0.021   14.9   1.2      0.042   13.9   1.2    1.5  1  ApoLp-III  Apolipophorin-III precursor (apoLp-III)
      0.048   14.0   0.2       0.14   12.6   0.2    1.8  1  SATase_N   Serine acetyltransferase, N-terminal


Domain annotation for each model (and alignments):
>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   5.3     8e-50   4.8e-46       7     166 .]      80     248 ..      57     248 .. 0.92

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 8e-50
                 CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC........HHH-HH.....HHHHH CS
        GrpE   7 eeeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksak......eneeek.....slleG 94 
                  + e d+++el+++le+ e+ev+++k+k +r+ a+f nl+ rt++e + a++fai++fakdL++ +Dnl+ral  ++      +  +e      +l++G
  CCE31237.1  80 GAGEPDALTELKKQLETKEAEVRDWKDKCMRTVADFRNLQDRTQREVKTAREFAIQNFAKDLVESVDNLDRALTMVPaeklasQ--DEAakdlvNLYDG 176
                 45566788899999************************************************************9988777432..33367999***** PP

                 HHHHHHHHHHHHHHTT-EE---TTSB--TTTEEEEEEECSSC...TBEEEEEE--EEETTEEEE-EEEEEEE CS
        GrpE  95 vemtlkqllkiLekhgvekiepkgepFDpnlheavstveddekeegtvvevvqkGYklkdrvlRpAmVkVsk 166
                 ++mt+  l+++L+khg+e+++p+g++F+pn hea ++ ++++ke++ v++v qkG+kl++rvlR+A+V+V+k
  CCE31237.1 177 LKMTEGILMQTLAKHGLERLSPEGDKFNPNEHEATFMAPQPDKEDNLVFHVQQKGFKLNGRVLRAAKVGVVK 248
                 **********************************************************************87 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.2     7e-06     0.042      10      76 ..      89     150 ..      85     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7e-06
   ApoLp-III  10 svkkqlnlpsqeevvetiKensenlvdqlkqvikslqeelkkksdeleealkevkkkieetadklse 76 
                 ++kkql    +e  v+ +K++    v   +++++ +q e+k++    e a++++ k+++e +d+l  
  CCE31237.1  89 ELKKQLE--TKEAEVRDWKDKCMRTVADFRNLQDRTQREVKTAR---EFAIQNFAKDLVESVDNLDR 150
                 4677755..56677999**************************9...999*************9976 PP

>> SATase_N  Serine acetyltransferase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   2.3e-05      0.14      10      62 ..     125     177 ..     115     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
                 HHHHHH-GGGHHHHHHHTTT-SSHHHHHHHHHHHHH-BSSS-HHHHHHHHHHH CS
    SATase_N  10 eeaaekepllasflyatilsheslesaLaflLanklasstlsaeqlrelfeea 62 
                 e ++++e ++++f ++ + s ++l++aL ++ a+klas++  a+ l +l++  
  CCE31237.1 125 EVKTAREFAIQNFAKDLVESVDNLDRALTMVPAEKLASQDEAAKDLVNLYDGL 177
                 44567999********************************9999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1360  (0.0758548); expected 358.6 (0.02)
Passed bias filter:                      684  (0.0381505); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1823.27
//
Query:       CCE31238.1  [L=423]
Description: probable 26s proteasome p44.5 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-41  140.1   3.1    3.9e-41  140.1   3.1    2.4  3  RPN6_N        26S proteasome regulatory subunit RPN6 N-termin
    1.8e-20   73.4   0.7    4.6e-20   72.1   0.2    2.0  2  PCI           PCI domain
    6.7e-10   38.5   1.0    1.8e-09   37.1   1.0    1.8  1  RPN6_C_helix  26S proteasome subunit RPN6 C-terminal helix do
    0.00026   20.7   0.3    0.00026   20.7   0.3    1.9  2  DDRGK         DDRGK domain
    0.00099   18.6   0.6    0.00099   18.6   0.6    2.3  3  TPR_MalT      MalT-like TPR region
     0.0011   19.3  16.2     0.0094   16.2   1.3    5.3  5  TPR_12        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.9   0.0      0.075   13.2   0.0    2.5  2  DnaB_bind     DnaB-helicase binding domain of primase
       0.04   14.0   0.1       0.32   11.1   0.0    2.5  3  DprA_WH       DprA winged helix domain
      0.084   12.9   2.3        6.4    7.1   0.2    4.1  4  TPR_7         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> RPN6_N  26S proteasome regulatory subunit RPN6 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   3.1     2e-44   3.9e-41       1     117 []      12     129 ..      12     129 .. 0.99
   2 ?   -1.3   0.0       1.3   2.6e+03      55      74 ..     170     189 ..     135     198 .. 0.60
   3 ?   -2.4   0.0       2.9   5.9e+03      84      84 ..     267     267 ..     231     299 .. 0.56

  Alignments for each domain:
  == domain 1  score: 140.1 bits;  conditional E-value: 2e-44
      RPN6_N   1 Aeelaksdpkeaeelykeilskks.kedeealreqeqalleLgelyrdqkkaeeLaelikesrsflssiaKaKtaKlvrtLldlfskipnslelqievl 98 
                 A++lak+dp++ae++yk+i sk++ +++++a+re+e+al++Lgelyrd+kk++eL++l++esrs++ss+aKaK++Klvr+Lldl+++ipns+e+++ ++
  CCE31238.1  12 AQKLAKTDPRKAEAIYKDITSKAPaATSDAATREYESALISLGELYRDEKKSKELVDLVRESRSVFSSFAKAKSSKLVRQLLDLIKEIPNSTETEVYIT 110
                 899*********************89999********************************************************************** PP

      RPN6_N  99 kesiewakeekriFLrqsL 117
                 k++iewa++e+r F rq+L
  CCE31238.1 111 KDCIEWATAERRAFQRQDL 129
                 *****************97 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
      RPN6_N  55 aelikesrsflssiaKaKta 74 
                 + l +++ + l +i+Ka++a
  CCE31238.1 170 QLLESRVYHALGNIPKARAA 189
                 33334455667777777766 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.9
      RPN6_N  84 f 84 
                 +
  CCE31238.1 267 V 267
                 2 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.3   6.5e+03      47      47 ..      97      97 ..      62     142 .. 0.56
   2 !   72.1   0.2   2.3e-23   4.6e-20       2     103 ..     286     387 ..     285     389 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.3
                H CS
         PCI 47 r 47
                +
  CCE31238.1 97 K 97
                2 PP

  == domain 2  score: 72.1 bits;  conditional E-value: 2.3e-23
                 HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEETTTTE CS
         PCI   2 sysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakidqesgi 100
                 +++++ +a  +++l++++++l  ++ el  d +++ +l +L++ + e++l++v++++s+++++++ak+++l++++vE+ l+++I d+ i + +dq +g+
  CCE31238.1 286 AMKAIARAHSNRSLEEYERSLSAYRYELGSDAFIRNHLRRLYDAMLEQNLIKVIEPFSRVEIDHIAKMVGLDTQQVERKLSQMILDKVIIGVLDQGAGC 384
                 689999********************************************************************************************* PP

                 EEE CS
         PCI 101 vvf 103
                 +++
  CCE31238.1 385 LII 387
                 997 PP

>> RPN6_C_helix  26S proteasome subunit RPN6 C-terminal helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   1.0   9.3e-13   1.8e-09       1      27 []     393     419 ..     393     419 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 9.3e-13
  RPN6_C_helix   1 kDktYeaALeTIknmgkVVDsLYeKAa 27 
                   +D+ Y+aAL TI++++ VVD LY+++a
    CCE31238.1 393 RDESYDAALSTIDKLSSVVDVLYTNQA 419
                   5***********************986 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.4      0.86   1.7e+03      58      61 ..      46      49 ..       4      99 .. 0.41
   2 !   20.7   0.3   1.3e-07   0.00026      50     149 ..     277     380 ..     265     393 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.86
                XXXX CS
       DDRGK 58 eeer 61
                 e++
  CCE31238.1 46 YESA 49
                2222 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 1.3e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....HHHHHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS CS
       DDRGK  50 eekekkkeeeerkkeeekerkeqeeyeklksefvveeegtekesaeeeek.....lleefinyikekKvvlleelavkfklktqevierikeLeeqgsl 143
                  +++ k+ e+++ + + + ++  eeye+  s+   e   ++  +++   +     l +++i+ i+    v+++++a   +l+tq+v  ++ ++  ++ +
  CCE31238.1 277 VKYAGKNLEAMKAIARAHSNRSLEEYERSLSAYRYELGSDAFIRNHL-RRlydamLEQNLIKVIEPFSRVEIDHIAKMVGLDTQQVERKLSQMILDKVI 374
                 55666777778888888888999999998887766644333333332.22244568999**************************************** PP

                 -EEE-T CS
       DDRGK 144 tGvlDd 149
                  GvlD 
  CCE31238.1 375 IGVLDQ 380
                 ****96 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.4   4.8e+03      97     134 ..      21      59 ..       9      62 .. 0.61
   2 !   18.6   0.6     5e-07   0.00099     229     304 ..     115     191 ..      69     198 .. 0.90
   3 ?   -0.4   0.3      0.29   5.8e+02     129     172 ..     215     261 ..     204     333 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.4
    TPR_MalT  97 heAletyeqalqlateqglqql.plvgfllvlladllyE 134
                 ++A+ +y++++  a+ +   ++ + ++ +l++l++l+++
  CCE31238.1  21 RKAEAIYKDITSKAPAATSDAAtREYESALISLGELYRD 59 
                 556666666666666554433325677777777777775 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 5e-07
    TPR_MalT 229 elpsdddnhflelelrn.larvllalgrydeAlellerLlkaaeelgrvrslieiliLqalalqaqgreeeAlaaLe 304
                 e+ + ++  f++++l++ l+ +++    y eAl+l++ Ll++ ++l    +l+e+++L +++++a+g+ ++A aaL+
  CCE31238.1 115 EWATAERRAFQRQDLEVrLVALYMTKQSYYEALTLINGLLRELKRLDDKLRLVEVQLLESRVYHALGNIPKARAALT 191
                 66677777898999977689999999999********************************************9997 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.29
    TPR_MalT 129 adllyEwndLeeAeqhlqeGielleql..ep.eaaldayvllarial 172
                 ++l+ E  d+ +A  +  e+++   +l  +  ++a+  y+ll++i l
  CCE31238.1 215 GKLHAEDKDFNTAFSYFIEALDGYHSLdeSAkAQAALQYMLLCKIML 261
                 67777777777777777666665555531121222234555555544 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.3   4.5e+03      58      70 ..      18      29 ..       6      34 .. 0.67
   2 ?   -0.0   0.0      0.56   1.1e+03      46      63 ..      48      65 ..      38      80 .. 0.64
   3 !   16.2   1.3   4.7e-06    0.0094       6      71 ..     130     193 ..     125     198 .. 0.92
   4 !    6.4   0.5    0.0055        11       5      41 ..     210     244 ..     206     289 .. 0.83
   5 ?    1.8   0.3      0.15     3e+02      22      40 ..     298     316 ..     289     330 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.3
      TPR_12 58 lgryeeAlellee 70
                + ++++A++++++
  CCE31238.1 18 T-DPRKAEAIYKD 29
                3.67777777765 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.56
      TPR_12 46 ttlrnLgrlyralgryee 63
                ++l+ Lg+lyr  ++ +e
  CCE31238.1 48 SALISLGELYRDEKKSKE 65
                456666666666555554 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 4.7e-06
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                  ++l a+++  + y eAl+l +  l+  +rl  +d++ +++++   +r+y+alg+  +A+++l+ +
  CCE31238.1 130 EVRLVALYMTKQSYYEALTLINGLLRELKRL--DDKLRLVEVQLLESRVYHALGNIPKARAALTTS 193
                 5679999************************..****************************99877 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0055
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdh 41 
                 +  + + ++++ +++  A++++ +al+ + +l +  +
  CCE31238.1 210 LDMQSGKLHAEDKDFNTAFSYFIEALDGYHSLDE--S 244
                 555678899999***************9998843..3 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.15
      TPR_12  22 AlellekaleiarrllGpd 40 
                 +le +e++l ++r  lG d
  CCE31238.1 298 SLEEYERSLSAYRYELGSD 316
                 5677778888777777766 PP

>> DnaB_bind  DnaB-helicase binding domain of primase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.8e-05     0.075      21      46 ..      86     111 ..      83     111 .. 0.93
   2 ?   -2.5   0.0       3.1   6.2e+03      44      54 ..     347     357 ..     345     359 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHHTTSSSHHHHHHHHHH CS
   DnaB_bind  21 aravrealpllaripdpieRdlYirr 46 
                 +++vr++l+l+ +ip++ e ++Yi +
  CCE31238.1  86 SKLVRQLLDLIKEIPNSTETEVYITK 111
                 689********************975 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.1
                 HHHHHHHHT-- CS
   DnaB_bind  44 irrlAerlgid 54 
                 i+ +A+++g+d
  CCE31238.1 347 IDHIAKMVGLD 357
                 68899999998 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       7.2   1.4e+04      10      25 ..      85     100 ..      81     102 .. 0.71
   2 ?   -1.3   0.0       1.2   2.4e+03      13      26 ..     172     185 ..     167     193 .. 0.83
   3 ?   11.1   0.0   0.00016      0.32      13      49 ..     331     368 ..     327     374 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 7.2
     DprA_WH  10 lddlerrvLaaLgpeP 25 
                 ++ l r++L+++   P
  CCE31238.1  85 SSKLVRQLLDLIKEIP 100
                 5667788888887666 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
     DprA_WH  13 lerrvLaaLgpePv 26 
                 le rv  aLg+ P 
  CCE31238.1 172 LESRVYHALGNIPK 185
                 7899******9985 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00016
     DprA_WH  13 lerrvLaaLgp.ePvhvDqLvrrtglpaaevsaaLleL 49 
                 le+ +   ++p + v +D +++ +gl++++v + L+++
  CCE31238.1 331 LEQNLIKVIEPfSRVEIDHIAKMVGLDTQQVERKLSQM 368
                 68888888887799*****************9998875 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.15     3e+02       1      21 [.      49      69 ..      49      73 .. 0.84
   2 ?   -3.1   0.0       5.5   1.1e+04       8      15 ..     176     183 ..     175     191 .. 0.62
   3 ?   -0.1   0.0      0.62   1.2e+03       6      27 ..     215     236 ..     213     246 .. 0.80
   4 ?    7.1   0.2    0.0032       6.4       3      34 ..     288     319 ..     286     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.15
       TPR_7  1 aLlnLarlysrlGdyeeAiel 21
                aL  L++ly+++ + +e+++l
  CCE31238.1 49 ALISLGELYRDEKKSKELVDL 69
                7889*******9999998876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.5
       TPR_7   8 lysrlGdy 15 
                 +y++lG+ 
  CCE31238.1 176 VYHALGNI 183
                 45555554 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.62
       TPR_7   6 arlysrlGdyeeAielyeqsLa 27 
                 + l+ ++ d+ +A +++ ++L 
  CCE31238.1 215 GKLHAEDKDFNTAFSYFIEALD 236
                 78999999*********99663 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0032
       TPR_7   3 lnLarlysr..lGdyeeAielyeqsLaltkdped 34 
                  ++ar++s+  l +ye+ ++ y+   +l +d ++
  CCE31238.1 288 KAIARAHSNrsLEEYERSLSAYRY--ELGSDAFI 319
                 689*******************99..88777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1095  (0.0610742); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2784.91
//
Query:       CCE31239.1  [L=2157]
Description: uncharacterized protein CPUR_05090 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.24   11.4   5.3        1.6    8.9   5.3    2.6  1  AT_hook   AT hook motif


Domain annotation for each model (and alignments):
>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   5.3   8.8e-05       1.6       1      11 [.     101     111 ..     101     113 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 8.8e-05
     AT_hook   1 kRkRGRPrKaa 11 
                 +++RGRPrK++
  CCE31239.1 101 PKPRGRPRKNN 111
                 79*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2236  (0.124714); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                       120  (0.00669307); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.75u 0.42s 00:00:03.17 Elapsed: 00:00:00.72
# Mc/sec: 9007.78
//
Query:       CCE31240.1  [L=313]
Description: related to peroxisomal membrane protein PMP47B [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-53  179.0   6.3    3.6e-17   62.1   0.1    3.0  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.1     2e-21   3.6e-17       5      95 ..      12      98 ..       8     100 .. 0.95
   2 !   59.7   0.0   1.1e-20     2e-16       2      95 ..     109     208 ..     108     210 .. 0.93
   3 !   59.7   0.6   1.1e-20     2e-16       3      89 ..     212     298 ..     210     305 .. 0.94

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 2e-21
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr  5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95
                 +++ laG+ +g+++ ++t+Pl ++ tr q+++k+++++    ++d++++i+  eG++gly+G++ +l++++++++++   ye ++ ++ k
  CCE31240.1 12 NVAHALAGAGGGILSMVLTYPLITLSTRAQVESKKAETK----FIDAVQRIVAREGIAGLYSGINSALFGISVTNFVYYYWYEWTRAFFEK 98
                67899******************************9874....9*******************************************9987 PP

  == domain 2  score: 59.7 bits;  conditional E-value: 1.1e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.......HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.......ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +l+++++++aG++ag++++++t+P++v+ tr+ t +k+s++   a+       ++ +l +++++eG  +l++G+lp+l+ v+ +  l+ +l+e++k+ +
  CCE31240.1 109 KLTTVESMIAGAIAGSATVIITNPIWVINTRVTTRQKHSQADLEAGkpaasptTMGTLMSLLRNEGPQALFSGVLPALVLVI-NPILQYTLFEQMKNAV 206
                 678999****************************999988776666899999****************************99.*************998 PP

                 CT CS
   Mito_carr  94 lk 95 
                  k
  CCE31240.1 207 EK 208
                 76 PP

  == domain 3  score: 59.7 bits;  conditional E-value: 1.1e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetl 89 
                 ++++  ++ G+l++++at+vt+P  +vK ++ ++++s++ sk++++  +l+++++eeG +gly+G++p++ +++ ++al f++ + l
  CCE31240.1 212 VTPAVAFFLGALGKLFATSVTYPYITVKSQMHVAGSSQSGSKREGMSATLSRVIREEGYAGLYKGIGPKVSQSVLTAALLFAFKDAL 298
                 5678899***************************************************************************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2304.69
//
Query:       CCE31241.1  [L=793]
Description: uncharacterized protein CPUR_05092 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-63  212.7   0.0    4.8e-63  211.6   0.0    1.6  1  Mak10     Mak10 subunit, NatC N(alpha)-terminal acetyltransfe


Domain annotation for each model (and alignments):
>> Mak10  Mak10 subunit, NatC N(alpha)-terminal acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.6   0.0   2.7e-67   4.8e-63       1     167 [.      55     219 ..      55     220 .. 0.96

  Alignments for each domain:
  == domain 1  score: 211.6 bits;  conditional E-value: 2.7e-67
       Mak10   1 egqlvkdesFtLfeavsAleimdpkmDsgliapeleeeeedfdvsapllpeevlgimdrllasemaWhsgssLsqTvftclYveklllpspkalkeakf 99 
                 +g++vk + FtLf++v+AleimdpkmDsg+i+ + ee+e+ +dvs++l+pe+vlgi+d+l+++em+Wh g++LsqT+ft++Yve+ll+p+p+++ ea+f
  CCE31241.1  55 PGEIVKHDLFTLFDSVAALEIMDPKMDSGCIQVG-EELEVLYDVSRSLQPEQVLGIIDQLICHEMSWHLGYPLSQTIFTSVYVEALLMPEPASTSEAHF 152
                 599****************************999.779************************************************************* PP

       Mak10 100 srkedeekektelelvdkvLrayvlalvkfcdlvleelskevlyeeEDfvtnkyglslleeieveevi 167
                  r++++ + + + + + +vLray+++l+k+c++v++++++e++yeeEDfv n+y+++lle+++++ev+
  CCE31241.1 153 VRNQNT-DAADQEQPMIQVLRAYIIGLLKACGYVNQRIKTEHFYEEEDFVPNTYNRTLLERFPTTEVQ 219
                 876555.888999999************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 5638.17
//
Query:       CCE31242.1  [L=73]
Description: related to atp synthase epsilon chain (mitochondrial) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-23   81.2   3.4    5.6e-23   80.7   3.4    1.3  1  ATP-synt_Eps  Mitochondrial ATP synthase epsilon chain


Domain annotation for each model (and alignments):
>> ATP-synt_Eps  Mitochondrial ATP synthase epsilon chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   3.4   3.1e-27   5.6e-23       1      49 []       3      51 ..       3      51 .. 0.99

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 3.1e-27
                  --TTTTS--HHHHHHHHHHHCCHSS-TTT--CCCCCS----EEEE--TT CS
  ATP-synt_Eps  1 saWRaaglsYnkYsniaAravRraLKeelraaAekreetelkytkwenG 49
                  +aW+ agl+Yn+Y+++aAra+Rr+LKe++r+aAe+r+e++l+++kw nG
    CCE31242.1  3 AAWKTAGLTYNRYLAVAARAMRRSLKEQHRVAAERRGEMDLRFAKWSNG 51
                  69**********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 558.53
//
Query:       CCE31243.1  [L=393]
Description: uncharacterized protein CPUR_05094 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-54  184.2   1.2    3.8e-54  183.8   1.2    1.1  1  Glyco_hydro_cc  Glycosyl hydrolase catalytic core
  ------ inclusion threshold ------
       0.86    9.5   3.5       0.97    9.3   3.5    1.2  1  SPX             SPX domain
        1.2    7.6   2.4        1.4    7.4   2.4    1.1  1  Macoilin        Macoilin family


Domain annotation for each model (and alignments):
>> Glyco_hydro_cc  Glycosyl hydrolase catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   1.2   6.3e-58   3.8e-54       1     239 []     152     390 ..     152     390 .. 0.87

  Alignments for each domain:
  == domain 1  score: 183.8 bits;  conditional E-value: 6.3e-58
  Glyco_hydro_cc   1 Glaynadasddkll..saksskisWyYnwsskpsselssaalefvPmlwgaksad......tdalanvksaakenskylLgFNePDlksqsnmsp 87 
                     Glayn da+ ++l+  sak++   W+Ynw+++p ++l+s+ ++f+P+lwg + ++      +++ +++++a +++ k+l +FNePD+k+qsn++p
      CCE31243.1 152 GLAYN-DATLANLVgsSAKKGVCGWAYNWGQYP-GNLDSQ-YSFIPTLWGRGPNNqntaflDSWPSSASKAVANGAKALFSFNEPDNKGQSNLDP 243
                     78998.77766666668889999**********.666666.49******97665544345556777777779*********************** PP

  Glyco_hydro_cc  88 eeAaklwkqliqplre.kgvklvsPavaatns.eegleWldeFleacs.kdckvdflavHwY..kgdfeelkehieelheayn.kpiWvTEfalq 176
                     ++Aa l+ ++++p  + +++ + sP+v++ n  +egl+Wl+ ++++c+ k+ck+df +vHwY    +++ l +h+e++h+  + kp+W+TEfa  
      CCE31243.1 244 STAAGLHVEYMNP--YsGKTLIASPSVSNSNIqGEGLDWLKGWVQQCKsKGCKYDFCNVHWYspVSQTQSLFDHLEQAHKICDgKPVWLTEFA-- 334
                     *************..6699********55444899***************************6445588999*********99**********.. PP

  Glyco_hydro_cc 177 sesgdasqeetkeflnevlawldsqeyVeryawfgfrsevsnvgannaLldenGeltelgsaY 239
                         das+ +t++fl++v++ l+  +y + y++f+      + + n +Ll++  +l+++g+ Y
      CCE31243.1 335 --PVDASDAQTADFLTQVIPKLEALDYLHAYSYFM-----VGHNTNLQLLSSPSSLSKIGAKY 390
                     ..789******************************.....66777789999999******998 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.5   0.00016      0.97      92     149 ..      83     138 ..      23     271 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00016
         SPX  92 e.............slprrsplsrssrssssygglvssppsansssssddssesnpadssssssssesess 149
                 +             + p  +++s+s++ss s +g++ss+ s + sss ++ss+s                s
  CCE31243.1  83 TpptkpnkasdnhlAAPTGDSGSSSGSSSGSSSGSSSSSGSGSGSSSGSSSSGSG---------------S 138
                 0222221112111122222222222222222222222222222222222222222...............1 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.4   0.00023       1.4     326     378 ..     102     154 ..      26     206 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00023
    Macoilin 326 ssnknskkasagsagssnssskkhsessksvtsssssknskkqklpaGkssaa 378
                 +s ++s ++s++s+gss+ss  +  +ss+s +s+s s +s k  + +Gk + a
  CCE31243.1 102 DSGSSSGSSSGSSSGSSSSSGSGSGSSSGSSSSGSGSVSSSKGPGFSGKRGLA 154
                 22233333333344444444444444444444444444444444444544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2677.77
//
Query:       CCE31244.1  [L=453]
Description: related to 3-phytase A precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-49  169.0   0.0    2.2e-49  168.8   0.0    1.0  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   0.0   1.2e-53   2.2e-49       2     383 .]      62     415 ..      61     415 .. 0.91

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 1.2e-53
                 EEEEEEEEE--SBB-SHHHHHHHHHHHHHHHH.........HHCHHTGCCGGGGT.........--SSSTTS.B-HHHHHHHHHHHHHHHHHCHTCCHT CS
  His_Phos_2   2 LksvvvviRHGdRtPkqkvkksvtspiflsllkkhkeKlkqlktalekkghfpgtyrkveveklqlilkwggelthaGrkqaeelGrqfrqrYplgLlr 100
                 ++++ v++RHG+R+P++++k ++++++++++          +   +  ++ f + y          il+  + lt aG++++ ++G++f +rY+ +L+ 
  CCE31244.1  62 VTFASVLSRHGSRFPTEEKKETYRELLQRIQE---------NVRMYGRGYGFIKEY-------DIQILEEND-LTVAGKNEMIQSGIRFFKRYE-NLAW 142
                 67899**************************9.........688899999999888.......234555555.*********************.9999 PP

                 TSS--TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTTSHHTCHHHCHHHTGGHCHHHHCHCCCCC CS
  His_Phos_2 101 lhltykdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaakdlldeakkklkelltegaeacpafewpikvakrvdelvkylkedm 199
                 + l   ++++r s+++ +++SA++f++G++ ++          k +++ + +  ++ +e +++    ++ ++ +c+ fe+   +++   ++ + + ++ 
  CCE31244.1 143 SVL---SPFVRVSGSDAILDSAHSFIRGFFYAKR---------KNPRPHLSNVLIISEE-DDAK---NPLNHGTCKGFED-GLKSELLAAKKNAWLNIW 224
                 987...9***********************6665.........7888888766666666.3333...3345779******.****************** PP

                 HHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHH...HHCT-TTGGGCTH..HCHHHHHHHHHHHHHHHC........TTTCCCCHHHHHHHHHHHHH CS
  His_Phos_2 200 deniakrleqlcpgesnllakerwdklercfyekn...kfdiskicdlydemkydalhnrylkdleelyklakvipqEygigpeeklkiGllllnpllk 295
                 +++++ rl+  +pg+ nl+ +e++  +++c   ++   k+++s++c+l+++   ++l ++y++ + ++y +        g+g++++ ++G++++n+l++
  CCE31244.1 225 APSVMTRLNRKMPGA-NLTLEETVYIMDLCPLITAastKRELSPFCRLFSK--REWLAYDYYQTQVNWYTY--------GPGNPMASTQGVGYVNELIA 312
                 **************8.**************9999999**************..******************........******************** PP

                 HHCTSSSEECCS.........CCCECS-SEEEEEE-HHHHHHHHHHCTT.TTTBTTB.SSS......TTT..HCCCS-CT-EEEEEEEEETCTTTEEEE CS
  His_Phos_2 296 kilndlqrtree.........atperhvrlrlyfthdshiysllnaLgl.peelagedslaa.....ldrlsaspelpymsqivfelyedssekkfyvr 379
                 +++  +++++++          t++ ++ l+++f+ ds+++++ +aLgl  +e+ ++ s+++      d++sa++ +p+++++++e++ ++++ k  vr
  CCE31244.1 313 RLTGYPVEDETStdpdldgdsDTFPLDRNLYADFAYDSTLMTVYGALGLwTDESVTLPSNRMvsasrADGYSATWTVPFAARMYVEKMDCDKDGKDLVR 411
                 **********99***********************************77244455555566589999***********************88888**** PP

                 EEEC CS
  His_Phos_2 380 llls 383
                 +l++
  CCE31244.1 412 VLVN 415
                 *997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3339.43
//
Query:       CCE31245.1  [L=262]
Description: uncharacterized protein CPUR_05096 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-08   33.5   0.1    9.9e-08   32.4   0.1    1.6  1  DNase_NucA_NucB  Deoxyribonuclease NucA/NucB


Domain annotation for each model (and alignments):
>> DNase_NucA_NucB  Deoxyribonuclease NucA/NucB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   5.5e-12   9.9e-08       4     101 ..      31     142 ..      28     156 .. 0.65

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 5.5e-12
  DNase_NucA_NucB   4 drsnsaeaaqnicvavavksGaakel.tldadksk.....rrqrRkaagc..sgspcn.....tlpysksgkdcDEyPfAstkEggkk...asl 81 
                       +   +e + n+c   a+++ +++   tl  d s      + ++ ka+gc   g+ c      +     +   cDEyPf  t+E+++       
       CCE31245.1  31 LCDLMPEICTNMCW--AMRCAQPRFPqTLTWDSSAleqdvTLANLKASGCnvLGNRCRdkhglQGHVGGMFFVCDEYPFFFTRESSQAggqSVS 122
                      56777899999999..888887764434444444400011445666677732234454444322222334457***********9887676889 PP

  DNase_NucA_NucB  82 rcvdktdNqsaGgQlsafyn 101
                      rcv  t N+ +G+Ql+a+++
       CCE31245.1 123 RCVRRTKNKLQGKQLRAMFE 142
                      *****************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1913.25
//
Query:       CCE31246.1  [L=505]
Description: related to allantoate permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-31  109.0  28.2    2.4e-31  109.0  28.2    1.4  1  MFS_1      Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.076   11.9  19.6       0.35    9.7  19.7    2.0  1  Sugar_tr   Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0  28.2   2.7e-35   2.4e-31       1     351 [.      59     430 ..      59     434 .. 0.82

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 2.7e-35
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltl..yalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGl 97 
                 l+l++++ +l+r+++g a   +l +dlgi+p ++   +tl  +++ +a++  +  +l  r+ + r++ + ++l++ ++l + f+ ++  l+++r + G 
  CCE31246.1  59 LCLLYLICFLDRANIGNAKIAHLERDLGIDPKSFKYSATLiiFFVSYAIFEALSNFLLKRWKPSRLIPIIMILWGCCMLGMGFVKNWSGLMAARWFLGT 157
                 67999**********999999************777555556***********************************66666966666*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee.. 188
                 ++++lfp+++++++ w++++e g   +++ ++++l+  +g ll++ +    g      W ++f+i + +++ ++++ ++ + + p e +  sp ++   
  CCE31246.1 158 AEAGLFPGVNYYLSCWYKRNEFGVRAAIFFSAAALAGSFGGLLAAGIQKMDGmrgiagWAWIFIIEGSLTICVGIVSFWMVHDFPDEASFLSPDDRArv 256
                 *******************************************995554444555555*****************655666555555555555555477 PP

       MFS_1 189 ........kgtgpaplvp...awkallkdpvlw...illialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsd 269
                         ++ ++         w++ ++    w   + +++  +  + +++++++lp++  + + ++      + + ll+ ++++++a+l +++g+lsd
  CCE31246.1 257 llrlkndnQSAAR----HenfKWEYAWAAVRDWktyCGMVIYMGSVMPMYSFSVFLPTI-IQSMSFTspddI-IRNQLLSVAPYALAAVLTVVVGFLSD 349
                 7777444433333....3444366666666556776555555555568999*******7.**********72.555555889999999999******** PP

       MFS_1 270 rlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfntagslggal 351
                 r+ r  r +++++++++aa+g+++l  ++s+++ +++ +l  +g+    p+ +a++s+++ +  ++g ++g +   g+l g++
  CCE31246.1 350 RFHR--RGVFIMGCAVVAAVGFVMLISSTSPTVQYAGTFLGAMGGYPPIPLTIAWVSNNVeGVYKRGIVLGMVIGWGNLNGVV 430
                 *988..**********************99****9999998887777799999999999976799999999888888877766 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  19.7   3.9e-05      0.35      82     335 ..     128     372 ..      89     392 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCH....HHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHC CS
    Sugar_tr  82 aavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklR....galvslyqlaitfGilvaaifglglnktsnadgwrillgl 176
                 + +l   + + +++ k   ++  l+++R+++G +  +    v  y+s   + +       ++ s   la +fG l+aa++     + +   gw + + +
  CCE31246.1 128 IMILWGCCMLGMGFVK---NWSGLMAARWFLGTAEAGLFPGVNYYLSCWYKRNEFgvraAIFFSAAALAGSFGGLLAAGIQKMDGMRG-IAGWAWIFII 222
                 2333333334444444...899999999987655444444444444433333333000134455556666666666666665443333.3688888888 PP

                 CHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHH CS
    Sugar_tr 177 qlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimy 275
                 +  +++ + i+ +       ++v+ +  +ea  ++      +d+ r l   k+ ++ + + e+ +w+  +    vr   +++ ++  +  +  + ++  
  CCE31246.1 223 EGSLTICVGIVSF-------WMVH-DFPDEA--SFLS---PDDRARVLLRLKNDNQSAARHENFKWEYAWAA--VRDWKTYCGMVIYMGSVMPMYSFSV 306
                 8877754444443.......3333.333333..3333...24666666666666777766678888888888..445555666666677788889999* PP

                 HTTTHHHHSS-THH......HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 276 ysptifenlglsks......llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg 335
                 + pti++++ ++ +       l ++  +++ +v t+v+ fl+drf RR ++++G+a+ a++ +++ 
  CCE31246.1 307 FLPTIIQSMSFTSPddiirnQLLSVAPYALAAVLTVVVGFLSDRFHRRGVFIMGCAVVAAVGFVML 372
                 ***********9999**9999********************************9998888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3715.18
//
Query:       CCE31247.1  [L=505]
Description: related to allantoate permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-32  112.2  28.2      3e-32  111.9  27.9    1.3  1  MFS_1     Major Facilitator Superfamily
    5.5e-05   22.2  12.3    0.00012   21.1  12.3    1.5  1  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9  27.9   3.3e-36     3e-32       1     351 [.      59     430 ..      59     462 .. 0.84

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 3.3e-36
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltl..yalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGl 97 
                 l+l++++ +l+r+++g a   +l +dlgi+p ++   +tl  +++ +a++  +  +l  r+ + r++ + ++++++++l + f+ ++  l+++r + G+
  CCE31247.1  59 LCLLYLICFLDRTNIGNAKIAHLERDLGIDPKSFKYPATLiiFFVSYALFEALSNFLLKRWKPSRFIPVIMIIWGSCMLGMGFVKNWSGLMAARWFLGV 157
                 67999*********9999999************999666667***********************************66666966666*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee.. 188
                 ++++lfp+++++++ w++++e g   +++ ++++l+  +g ll++ +    g      W ++f+i + ++++++ + ++ + + p e +  sp+++   
  CCE31247.1 158 AEAGLFPGVNYYLSCWYKRNEFGVRAAIFFSAAALAGSFGGLLAAGIQKMDGmrgiagWAWIFIIEGSLTIFVGFISFFMVHDFPDEARFLSPQDRArv 256
                 *******************************************995554444555555***************99744555555555555555555477 PP

       MFS_1 189 ........kgtgpaplvp...awkallkdpvlw...illialllfffgfsglltllplylqevlgls.....glllaglllallalvgailallagrls 268
                         ++ ++         w+++++    w    ++++  +  + +++++++lp++  + + ++         + ll+  +++++a+l +++g+ls
  CCE31247.1 257 llrlkndnQSAAR----HedfKWEYVWAAVRDWktyNAMLIYMGSLMPLYSFSVFLPTI-IQSMRFTspddiI--KNQLLSVPPYALAAVLTVVVGFLS 348
                 8887444433333....3556588888888778877444444444558999*******7.**********752..5555599999999999******** PP

       MFS_1 269 drlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla.ppeeagtasglfntagslggal 351
                 dr++r  r ++ ++++++aa+g+++l  ++++++ +++ +l  +g     p+  +++s+++ +  ++g ++g f   g+l g++
  CCE31247.1 349 DRFQR--RGVFVMGSAVVAAVGFVMLISSTNPAVQYAGTFLGAMGIYPPIPLTVVWVSNNVeGVYKRGIVLGMFIGWGNLNGVV 430
                 **999..**********************9999999988887778888899999999999977799999999999988887776 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1  12.3   1.3e-08   0.00012      77     335 ..     120     372 ..      96     404 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHH....HHHHHHHHHHHHHHHHHHHHHHTSS-...TT CS
    Sugar_tr  77 kslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalv....slyqlaitfGilvaaifglglnktsn...ad 168
                 k   ++ v+++i + ++      +++  l+++R+++G++  +    v  y+s   + +  g       s   la +fG l+aa++        +     
  CCE31247.1 120 KPSRFIPVIMIIWGSCMLGMGFVKNWSGLMAARWFLGVAEAGLFPGVNYYLSCWYKRNEFGVRAaiffSAAALAGSFGGLLAAGIQKMD----GmrgIA 214
                 455567788888777777777778***********998777777777777666665555554440000555555666666666665544....333346 PP

                 HHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHH CS
    Sugar_tr 169 gwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqql 267
                 gw + + ++  +++++ ++ +f+         ++  +ea+    +     d+ r l   k+ ++ + + e  +w+ ++    vr   ++ ++l  +  l
  CCE31247.1 215 GWAWIFIIEGSLTIFVGFISFFM--------VHDFPDEARFLSPQ-----DRARVLLRLKNDNQSAARHEDFKWEYVWAA--VRDWKTYNAMLIYMGSL 298
                 89999988888886665555553........34444444443333.....444444444444444444445557777777..55555677888888889 PP

                 TTHHHHHHHTTTHHHHSS-THH......HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 268 tGinaimyysptifenlglsks......llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg 335
                     ++  + pti++++ ++ +       l ++  +++ +v t+v+ fl+drf RR ++++G+a+ a++ +++ 
  CCE31247.1 299 MPLYSFSVFLPTIIQSMRFTSPddiiknQLLSVPPYALAAVLTVVVGFLSDRFQRRGVFVMGSAVVAAVGFVML 372
                 99999**************99999999999********************************999998888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3786.98
//
Query:       CCE31248.1  [L=582]
Description: related to HOL1 transporter protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-14   51.0  36.2    9.8e-14   51.0  36.2    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0  36.2   5.5e-18   9.8e-14       2     297 ..      98     421 ..      97     480 .. 0.76
   2 ?   -3.4   5.6      0.19   3.5e+03      29      87 ..     493     549 ..     449     556 .. 0.68

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 5.5e-18
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa.sslwlllvlrvlqGlg 98 
                 l+++++++++ ++++p++   l+e + +s ++i  l+++   ++a++ ++ + ++  +G r+v+++++ll+++g ++ ++ a   + + l++rv+qGlg
  CCE31248.1  98 LVMVVIVGATKTVFIPTAG-SLSELYRVSDTSIAVLTAVPLMVSALTGIFSAIVARFWGKRPVYMVAALLMFVGtMWNMT-AgGRYGFCLASRVIQGLG 194
                 6788999************.9*****************************************************666666.535555************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll...............peepperkrk 182
                  ga+  +++  i d + + er+  + ++++++  ++  +pll gl +   g++ +f ++  ++ +af l  l +                 +pp+++r+
  CCE31248.1 195 WGAFDVLVNGSIQDTYFEHERNVPLTIYNVASITATWGAPLLVGLASKVNGFTTAFRVINCFYGVAFPL--LAFaapestfdrangaitSIPPPKSWRF 291
                 ******************************999999999***************************887..5555699999999999999999999999 PP

       MFS_1 183 spkeee.............kgtgpaplvp..awkallkdpvl......willialllfffgfsglltllplylqevlgls......glllaglllalla 254
                 + +e+              +++          +++ll  p        w+l++  l+ f +++gl++++ ++  +   ls      g+l++g  + +++
  CCE31248.1 292 RYREKAlsvpeyfaqmkpfSSQ------ApvTFSSLLQAPRAlvapttWMLFLLTLVPFGALWGLTMTISIM-TTPAPLSlgvsltGVLMTG--PWVIS 381
                 9999989988888766444333......13335556665544355566877777777777777777777774.5555555522255666666..66666 PP

       MFS_1 255 lvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                 l+++++  l   l+   g r ++ +++lll+++++++++  ++
  CCE31248.1 382 LLCVGGVSLYRGLH---GQRSTRRVSCLLLAAGTALVLIGLLS 421
                 66655544444444...33444444444444444444433333 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.19
       MFS_1  29 ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwl 87 
                  s + +  +++l +++++ ++l+l ++++++G  +  ++gl+++ +  l +  +  +lw+
  CCE31248.1 493 TSFDMLTGVTVLRSIATGNFILILPHVVTNYGGLKAAVIGLAAMQVV-LTAGpM--TLWW 549
                 45555555888888899999999999999999999999999888888.333323..3444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4347.08
//
Query:       CCE31249.1  [L=602]
Description: related to mannosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-84  282.9  21.8    5.9e-84  282.7  21.8    1.0  1  Glyco_transf_22  Alg9-like mannosyltransferase family


Domain annotation for each model (and alignments):
>> Glyco_transf_22  Alg9-like mannosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.7  21.8   3.3e-88   5.9e-84       2     417 .]      35     467 ..      34     467 .. 0.90

  Alignments for each domain:
  == domain 1  score: 282.7 bits;  conditional E-value: 3.3e-88
  Glyco_transf_22   2 ifllllalrlllalltqtsfdpDEffqslEvahklvfgkgtltWEyspkygiRSylfllllalpyrllaelvadskiavlyapRlllallsali 95 
                      +f++++a+ ++ al+  +  d+DE+f+++E+ah+l  g+g++tWEysp y+iRS+l++ l+a+++ l  +l + sk+  +y++R  la+l+al+
       CCE31249.1  35 AFYVFFAAAMIAALFAPIQ-DCDETFNYWEPAHYLSHGYGLQTWEYSPDYAIRSWLYVGLHAVVGNLRRLLPQSSKVSEFYFIRYGLAFLCALC 127
                      6999***************.************************************************************************** PP

  Glyco_transf_22  96 dyylfravcrkygseiakialllslsswglfvfstrtfsnslemlltsialyllsellsrenksssnekylvavlliavlavliRptsallwlp 189
                      ++ lf++++ +++ +i +++l++ ++s g+f++s +++++s++m++++i    + +        +   k++  ++++av+++l++p++ +l +p
       CCE31249.1 128 QTILFKVISLTLNGRIGMFFLIATVTSPGNFHASAAFLPSSFAMYMCMIGAASFMN-------WRGGIKTAHGIFWFAVAGILGWPFASALCAP 214
                      ************************************************98776653.......1223467789********************* PP

  Glyco_transf_22 190 lvlflllrlvkkrsktf..lfliialvllvlllvlvlviliDslfYgkfvftplnflkyNvl..snlsslyGvhPwyfYllqnlpnilgvllla 279
                       +l+ l+ ++  +++ f    ++++ ++++ llvl+   li   fY+k+ ++ +n++kyN++  + +++lyG+++w fY+ +  +n+++ ++la
       CCE31249.1 215 YLLEELVLVFFSDKDAFieAIIRFFRGVIAGLLVLFFDFLINLFFYKKMAVVSWNIVKYNIFssTGGPELYGTEAWTFYMKNLALNFNIWFVLA 308
                      *********9999999966567889999999999999*************************98899*************************** PP

  Glyco_transf_22 280 vllgllvllsr.........kvsr.lllllltilltLlvysllpHKElRFllpvlPlillsaavlltrls.............resakvskk.l 349
                      +l+++l+ll++         +     +  +++++++L++++++pHKE+RF++p +P++ l+a++ l  +              r    + k+  
       CCE31249.1 309 LLALPLFLLQKvvspsghgfQSGLrTVVFVAPFYMWLAIFTAQPHKEERFMYPMYPFLALNASISLHIILaavgstnpgtlagRIP-ARLKLlG 401
                      ********88899*****8744344678899***********************************99998999888888775333.3333346 PP

  Glyco_transf_22 350 sllvllllfnvvlalllglvhqagvillv.evmseleetkrknrkekketssvyvlkecyrtPsssylh 417
                      +  v+ll   v+l +l+g++  ++++l v   +    +++        e + v+++ke+yr+Pss++l+
       CCE31249.1 402 VSIVMLLALDVSLLRLYGIYSAYSAPLKVySRLWGALDGQ---SPLGREGDLVCFGKEWYRFPSSFFLP 467
                      778999999*****************99995554444444...23455899****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4457.45
//
Query:       CCE31250.1  [L=589]
Description: related to nuclear assembly factor NAF1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-46  157.4   0.7    2.3e-46  157.4   0.7    1.6  2  Gar1        Gar1/Naf1 RNA binding region


Domain annotation for each model (and alignments):
>> Gar1  Gar1/Naf1 RNA binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.21   3.8e+03     112     122 ..     114     124 ..      60     145 .. 0.56
   2 !  157.4   0.7   1.3e-50   2.3e-46       7     153 ..     203     347 ..     199     348 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.21
                 XXXXXXXXXXX CS
        Gar1 112 eelkkkkgpda 122
                  el++ +g  +
  CCE31250.1 114 TELQNDQGEHP 124
                 23444444444 PP

  == domain 2  score: 157.4 bits;  conditional E-value: 1.3e-50
                 ---TT----TTS-EEEEEEEEEEETTEEEEEE---S--B--BTT-EEEETT--EEEE--EEES-SSS-EEEEE--GGHHHHHHHTTTTSEEEEE-X..X CS
        Gar1   7 vekedieigppeevleiGtvssivenevviksttsgekkvldfnsilflenktqiGkVdEifGpvnepyysVklnsseeikaksfkvgdkvyiapdlpl 105
                 ++k+d+ i+++++++e+G+++++v++ ++ik++t ge++vld +s+l+++++++iG V E++G+v +p+y+V + s++ei + ++++g+k+++ +d  +
  CCE31250.1 203 LPKPDVVITEDMKIEELGSIENMVDTIMLIKAITPGEYQVLDTGSVLCTAQRKVIGVVAETIGKVLQPMYTVYFRSADEIRDLGLEIGTKIFYPVD--H 299
                 578999******************************************************************************************..* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Gar1 106 erfllteelkkkkgpdasnendeElpeeevefsdDekeaeakkkkkgk 153
                 +++++t++lk+ kg+dasn +deE+ +ee+efsdDekeae+kk kk++
  CCE31250.1 300 ASYVFTQPLKNLKGSDASNIHDEEVGDEEMEFSDDEKEAEYKKAKKQQ 347
                 **********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1053  (0.0587317); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4014.85
//
Query:       CCE31251.1  [L=383]
Description: related to aminopeptidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-28   99.3   0.0    3.1e-28   98.8   0.0    1.2  1  Peptidase_M28  Peptidase family M28
    1.6e-05   24.7   0.6    3.6e-05   23.6   0.6    1.6  1  Peptidase_M20  Peptidase family M20/M25/M40
    0.00084   19.0   0.1     0.0015   18.2   0.1    1.4  1  RNA_Me_trans   Predicted SAM-dependent RNA methyltransferase
  ------ inclusion threshold ------
       0.08   12.6   0.0       0.14   11.8   0.0    1.3  1  DUF5387        Family of unknown function (DUF5387)


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0     7e-32   3.1e-28       2     197 ..     165     372 ..     164     373 .. 0.90

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 7e-32
                    EEEEESTTCESEEEEEEEE--B-TTT....TCCT---TTTTHHHHHHHHHHHHHCHH.....GGCCSSEEEEEEEESSCSGSSHHHHHHHH.HHCC CS
  Peptidase_M28   2 viatlegkatdevlllgAHyDsvgvg....rgpifvGAdDnAsgvaalLelarvlaa.....sgsrpkrgvrflffdaEEagllGSkafak.akpe 87 
                    viat++gk+ + ++++gAH Ds+        +p   GAdD++sg+++++e+  ++ a      g + ++++ f +++aEE gllGS+a +k  +++
     CCE31251.1 165 VIATIPGKS-NSTIIIGAHQDSINLWlpilAAP---GADDDGSGTVTIMEVFAAVLAseeivAG-KAENTIEFHWYSAEEGGLLGSQAIFKeYEEQ 255
                    9********.99************888999999...**************96555553666333.66***********************87677* PP

                    CTTEEEEEEECS-SSSS--EEE.......HHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STTHHHHTTT--EEEE...CTSSS-TTTT CS
  Peptidase_M28  88 lkkiaavlnlDmvgsggkellf.......esgdkssselekelkalakpvgraaaedpfdersgrgrsDhspflkagvpvldl...aetgfpevyH 173
                      +++a+l+ Dm+g  + + +        ++ d  +++l+k +k  ++++ ++      + ++g+ +sDh++  kag p + +   a+++ ++++H
     CCE31251.1 256 ERDVKAMLQQDMTGFVKGTRDAglpesvgVIVDYVDAGLTKFIKLIIEQYCQI---PWVETKCGYACSDHASASKAGYPSAFViesAFDKSNKDIH 348
                    ******************9999999****9********************998...6778888*******************988899999***** PP

                    STTSSGGGB-HHHHHHHHHHHHHH CS
  Peptidase_M28 174 tprDtldnidkdtlariaelvlel 197
                    +++Dt+d+++ + + ++a++ l +
     CCE31251.1 349 STSDTIDRLSFEHMLEHAKMTLGF 372
                    **********99999888877655 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.6   8.1e-09   3.6e-05      30     200 ..     193     368 ..     178     375 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 8.1e-09
                    EESTTTTTTHHHHHHHHHHHHHHHHH....TTT-SSEEEEEEESTTSSTTTHHHHHHHHHH.TTTCESEEEEEEEESSSBTCHSTETEEEEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20  30 lyGrGaddmkggvlaalealralkde....gikpkgtivllfqpdEEggrgGakallegle.erekvdavfelhieepgileagklaigvvkveve 120
                    l ++Gadd+  g ++++e+++a+ ++     +k + ti++    +EEgg  G++a+++++e ++++v+a++     + ++ ++g+        +  
     CCE31251.1 193 LAAPGADDDGSGTVTIMEVFAAVLASeeivAGKAENTIEFHWYSAEEGGLLGSQAIFKEYEeQERDVKAML---QQDMTGFVKGT-------RDAG 278
                    779*****************9999986666567799***********988********9998999999966...44444444344.......2333 PP

                    EEEEESHEEEC..CHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHH..TTTEEEEE....EESSGGCTTSTTTEEE...HHHHHHHHHH CS
                    xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx....xxxxxxxxxxxxxxxx...xxxxxxxxxx RF
  Peptidase_M20 121 lleggapvtln..dsplvkalaeaaeelfgekvelivsgpggtdarff..agiptvmi....fgpgsglaHspnEyvd...ledlekgikv 200
                     l ++  v ++  d+ l+k+++ ++e++++  + ++ +g +++d +    ag p++++    f  +++++Hs    +d    e++ + +k+
     CCE31251.1 279 -LPESVGVIVDyvDAGLTKFIKLIIEQYCQIPWVETKCGYACSDHASAskAGYPSAFViesaFDKSNKDIHSTSDTIDrlsFEHMLEHAKM 368
                    .456777777777899999999999987788866665664666666665777786644256555334889998888885555555555555 PP

>> RNA_Me_trans  Predicted SAM-dependent RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   3.3e-07    0.0015     113     179 ..      53     125 ..      43     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.3e-07
  RNA_Me_trans 113 Tselrkkg......fegRrLGpvqmttDtAvrvtklvvedkvkleeieyvdepelkfnkkesvempfrYvkde 179
                    +elr++g       ++R LG++q+tt t v   +++v++    + ++ +d+  ++ + ++ ++ + rY + +
    CCE31251.1  53 KWELRRNGlqfmdiTATRDLGQKQFTTKTSVTFPRKCVQHDAVKKLVPELDKKRMRKHLQKLTSFHTRYYNSD 125
                   56777777777777899**********************9999999999999999999999999999998754 PP

>> DUF5387  Family of unknown function (DUF5387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.1e-05      0.14      81     146 ..     200     266 ..     196     282 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.1e-05
     DUF5387  81 dvveGavtvmnvnGeegldkdvivskvvkpsetqkevneedekvkkpadfpdyeei.kkakdmened 146
                 d  +G+vt+m+v      +++++  k  +++e +   +ee   +   a f +yee  +  k m ++d
  CCE31251.1 200 DDGSGTVTIMEVFAAVLASEEIVAGKAENTIEFHWYSAEEGGLLGSQAIFKEYEEQeRDVKAMLQQD 266
                 5568************9999**********************************9725577776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2741.24
//
Query:       CCE31252.1  [L=181]
Description: uncharacterized protein CPUR_05103 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1397.16
//
Query:       CCE31253.1  [L=248]
Description: uncharacterized protein CPUR_05104 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-32  111.0   0.0    6.1e-32  110.3   0.0    1.3  1  Sld5      GINS complex protein
  ------ inclusion threshold ------
       0.74    9.1   0.0       0.74    9.1   0.0    1.9  2  EIN3      Ethylene insensitive 3


Domain annotation for each model (and alignments):
>> Sld5  GINS complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.0   6.8e-36   6.1e-32       2     109 .]      51     203 ..      50     203 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 6.8e-36
                 EEEHHHHHHHHHTTSCCCHHCHHHCHHHHHHCCCHHTTS...........................................SSSTTTTTTHHHHHHHH CS
        Sld5   2 eLPlWlaelLkrqrrveieppewlspesleailedetks...........................................sdlpslpphflelavkl 57 
                 ++PlWla+lLk+qrr++i+pp+wl+p+sl++++ +etk+                                           s+ ++lp+h++ela++l
  CCE31253.1  51 DVPLWLALLLKKQRRANIVPPPWLHPDSLRDVIRHETKVdtkgwappppppsrgdsrgnatlfgaddevplsapflpsctanSPSGALPYHWYELAEML 149
                 79************************************************************************************************* PP

                 HHHHT.....HCHHHHHHHHHHHHHHHHHHHTHCHHHHHHHTS-TCCHCCS-HHHH CS
        Sld5  58 lelard....ldelkrllrdllevRlakirkfaenledaagggggellsglseeEk 109
                 l++a d    + e+++llrdl+evR+ak+r+++ +le+    +g + l+g++++E+
  CCE31253.1 150 LAHAGDdvasAAEVRSLLRDLQEVRAAKMRSSTAQLENGV--DGVMSLRGVGAMEL 203
                 *****99*********************************..*************5 PP

>> EIN3  Ethylene insensitive 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   2.3      0.25   2.3e+03     165     192 ..      69      97 ..      61     107 .. 0.73
   2 ?    9.1   0.0   8.2e-05      0.74      33      82 ..     169     219 ..     146     230 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.25
                 -HHHH.---S--HHHHHHT.--TT--.-- CS
        EIN3 165 vpPPW.WPtGkeewwaelgevpaeqgppP 192
                 vpPPW  P+   + + ++++v ++  +pP
  CCE31253.1  69 VPPPWlHPDSLRDVIRHETKVDTKGWAPP 97 
                 89999558888888888888877766555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 8.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX CS
        EIN3  33 ekekskkieeqarrkkmsraqDgiLkym.lklmevckarGfvyGiipekGk 82 
                 + ++ +  + ++++ ++++  Dg++    +  me  ++rGfv G+++   k
  CCE31253.1 169 DLQEVRAAKMRSSTAQLENGVDGVMSLRgVGAMELAESRGFVTGVVEGVRK 219
                 44455566777888889999999987543789*************976544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1918.65
//
Query:       CCE31254.1  [L=314]
Description: uncharacterized protein CPUR_05105 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-06   28.0   2.0    3.2e-06   27.2   2.0    1.4  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain
     0.0011   17.9   0.0     0.0016   17.3   0.0    1.2  1  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   2.0   3.6e-10   3.2e-06       8      33 ..      46      71 ..      45      76 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 3.6e-10
                HCT---STSSSS-HHHHHCTHHHCCC CS
     Zn_clus  8 kkKvKCdakkPaCsnCkklnleCtfy 33
                k++vKCd+ kPaC+nC+k+   C  y
  CCE31254.1 46 KRHVKCDETKPACKNCIKWAGYCGGY 71
                89*****************9888755 PP

>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.8e-07    0.0016      20     129 ..     154     268 ..     136     285 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.8e-07
  Fungal_trans_2  20 s...snpfrkvllplalsnk.allhallalsafhlqskgpkds.lereakrykslalkelqealaelsstlsrnekykdiLaaiLllcsieissg 109
                     +    ++f +++lp++ ++  a+++a  a+  +  + + +  +      + y+ +al+    al+e ++ +s+++ + + ++++++ +++e+ +g
      CCE31254.1 154 PtvfDDSFWECILPRLVQDNpAIHYAHQAVHTLLCAKSAEVPYlGPAAGRDYYGEALTCYGLALSETRKATSQQTDLREAIVCCMFFVIFESLNG 248
                     246667788888888766555666666666555554444444445666788888888888888888888888888888999999*********** PP

  Fungal_trans_2 110 dvsdwrvhLeaatsliksrg 129
                     d+ + + hL+  ++l   +g
      CCE31254.1 249 DRASAQAHLQSGQRLSMELG 268
                     **********9998865555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2300.13
//
Query:       CCE31255.1  [L=403]
Description: uncharacterized protein CPUR_05106 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0026   17.8   0.0     0.0049   17.0   0.0    1.5  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.015   15.7   0.0      0.028   14.8   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
        0.1   12.6   0.0        0.2   11.7   0.0    1.5  1  Acetyltransf_13  ESCO1/2 acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   8.1e-07    0.0049      70     103 ..     113     146 ..      98     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.1e-07
                     EEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHH CS
  Acetyltransf_9  70 tlkaagvtgVavapehrgrgvlskLlaraleemr 103
                      ++a gv++V + p+hr++g+ sk+l  + +e++
      CCE31255.1 113 DVTAHGVASVFTPPHHRRKGYSSKMLSLLGDELA 146
                     68999********************987766665 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   4.7e-06     0.028      25      49 ..     117     149 ..      88     175 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.7e-06
                     TCTEE..EEE-GGGTTSSHHHHHHHH........T CS
  Acetyltransf_7  25 aeitr..laVdpeyrgkGiGraLlea........a 49 
                     +      +++ p++r+kG+ +++l +        +
      CCE31255.1 117 HG--VasVFTPPHHRRKGYSSKMLSLlgdelarqE 149
                     22..2469****************97455443321 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.4e-05       0.2       5      40 ..     117     152 ..     114     174 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.4e-05
  Acetyltransf_13   5 cGisriWvssshRrkgiAtkLldaarenfiyglele 40 
                       G+  +++ ++hRrkg  +k+l  + ++   +   +
       CCE31255.1 117 HGVASVFTPPHHRRKGYSSKMLSLLGDELARQEAQQ 152
                      59********************98877766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2840.80
//
Query:       CCE31256.1  [L=556]
Description: probable proline-tRNA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-22   78.8   0.0    5.1e-22   77.9   0.0    1.5  1  ProRS-C_1       Prolyl-tRNA synthetase, C-terminal
    5.3e-22   78.6   0.0    1.1e-21   77.6   0.0    1.5  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    8.5e-18   64.3   0.0    2.2e-17   63.0   0.0    1.8  1  HGTP_anticodon  Anticodon binding domain


Domain annotation for each model (and alignments):
>> ProRS-C_1  Prolyl-tRNA synthetase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   8.6e-26   5.1e-22       1      69 []     464     556 .]     464     556 .] 0.97

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 8.6e-26
                 HHHHHHHHHTT-EEEEEESSGHHHHHHHHHHH..................S-EEEEEESSB....-SSCCCSB-T..TT-SB-SEEEEEE-B- CS
   ProRS-C_1   1 weefkealekkgfvlapWcgeeecEekIkeet..................gakslcipfdq....epseegtkCi..vcgkpakkwvlfgrsY 69 
                 w+++ + l++k++vl+p+c + +cE++Ike t                  g+kslcipf+q    +  +++t C+   c+ +a+kwv+fgrsY
  CCE31256.1 464 WDDVLPSLDEKNVVLIPFCLDGKCEDRIKELTtradddrdvpenqklpsmGMKSLCIPFEQpegtDLVPGETACLnpECKGKAQKWVMFGRSY 556
                 9***********************************************************998876678******99**************** PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   1.8e-25   1.1e-21      11     176 ..     150     318 ..     138     321 .. 0.90

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 1.8e-25
                   EEE-SSSHHHHHHHHHHHEEEB.GGSSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEES.GGGHHHHHHHHHHHHHHHHHHTT.SCEEEEEE. CS
                   xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  tRNA-synt_2b  11 yiLkPtneetfvelirdevlrs.krLPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfha.easlddslrdlikaisriferlglefraiiel. 104
                    +++Pt+e+ ++  ++++ +rs ++LPl+l q  ++ R E++++ + lR reF +++g+  h+ e+ +  ++ +++++++ ++e+l+  + ++++  
    CCE31256.1 150 VAIRPTSEAVMYPYYSKW-IRShRDLPLRLNQWNSVVRWEAKQTTPFLRTREFLWQEGHTAHLtEELASKEVLEILELYAGVYEQLL-AVPVVRGTk 244
                   579*************99.***555*****************888******************8888999***************98.556777776 PP

                   ..GTTSCBTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEEEE.HHHHHHHHH CS
                   ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
  tRNA-synt_2b 105 ..msaksadykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksvimicaaig.veRllsail 176
                     ++ k a +++++ +e + +s ++gi+ +t + lg+++s+ +++tv d +n+ ++v + + + g  +R++++++
    CCE31256.1 245 teNE-KFAGGYYTTTVEGYIPSNGRGIQGATSHALGQNFSKMFQITVEDPQNKGQHVNVWQNSWGlSTRVIGVMV 318
                   4344.34889999*************************************************999779***9987 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   3.7e-21   2.2e-17       1      93 [.     337     437 ..     337     438 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 3.7e-21
                     SEEEEESSSS.......HHHHHHHHHHHHHHHHTTTSEEEEES.SSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHH CS
  HGTP_anticodon   1 qvvviplnek.......aeeleeyakklaeeLraagirveldd.snesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldel 87 
                     q+v++p++ +       ++++e+ +++ +  L++ag+r e d  +++++ +k+++++++g+p++++ G+k++ kg+vt  +rdt+e+ +v+++el
      CCE31256.1 337 QAVLVPVGINknttaedRKKHEDQMDEMRVTLKKAGVRSESDWrEGYTPAWKFNDWEMKGVPLRLEFGPKDAAKGVVTYARRDTGEKGEVPIEEL 431
                     79999**99999****9999***********************99************************************************** PP

                     HHHHHH CS
  HGTP_anticodon  88 veklke 93 
                     ++k+ e
      CCE31256.1 432 ATKVPE 437
                     **9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4134.91
//
Query:       CCE31257.1  [L=566]
Description: probable tailless complex polypeptide 1 / chaperonin subunit alpha [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.8e-154  514.0  10.9   4.3e-154  513.8  10.9    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  513.8  10.9  2.4e-158  4.3e-154       1     489 [.      36     553 ..      36     555 .. 0.98

  Alignments for each domain:
  == domain 1  score: 513.8 bits;  conditional E-value: 2.4e-158
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 +a++vk+++GP+G+dKm v+++g+v+vTnDGatil+ l++e+Pa k+lv++a++qd+evGDGTt+vv++a+eLl+++ +l+++ +hpttii gy+ al 
  CCE31257.1  36 IANVVKSSFGPSGLDKMMVDDIGDVTVTNDGATILSLLDVEDPAGKILVDLAQQQDKEVGDGTTSVVLIAAELLRRGNELMKNRIHPTTIITGYRLALR 134
                 79************************************************************************************************* PP

                 HHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCS....EECSCCCEECCCCEECECTTSEEESEEEESS--SSTT CS
  Cpn60_TCP1 100 kaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieene....keldlgrikvvkieggsledselveGlvldkgvlspd 194
                 +a+++L+ + v+i++e+  r++L+++a+ts+ssk++ +++e++s++vvdA++++++++    +++ ++ ++++k +g+s+ +s lv+G++l+++v+s+ 
  CCE31257.1 135 EAIKYLNDN-VSIKVENLGRDSLINIAKTSMSSKIIGADSEFFSNMVVDAMQAVKTTNnrneSKYPVKAVNILKAHGKSVLESVLVKGYALNCTVASQA 232
                 ******655.69999999*********************************999888889999************************************ PP

                 SSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHH CS
  Cpn60_TCP1 195 mpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlakat 293
                 mp+++++ak++ ld+ L+ e+ ++ ++++++d+++le+++ +e  +++e++e i k+g+nvv+++kgiddl+l++++++g +++rr+kk+dl+r+a+at
  CCE31257.1 233 MPTHIQDAKIAFLDMNLQKERMKMGVQITVDDPQQLEEIRARESGMVLERVELILKAGANVVLTTKGIDDLVLKMFVERGAMGVRRCKKEDLRRIARAT 331
                 *************************************************************************************************** PP

                 T--EBSCGGGGGCGC......-EEEEEEEECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHH CS
  Cpn60_TCP1 294 Gatavssledltpee......lGtakkveeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakk 386
                 G+t++ssl+dl+ +e      lG+a++v++e+i+++++++++++k +++a+i+lrg++d+ lde+er+++d+l++vk+++e++ +vpGGGa+e++l  +
  CCE31257.1 332 GGTLLSSLSDLNGDEkfepsyLGNAESVSQERISDDECILVKGTKAHSSASIILRGPNDYSLDEMERSVHDSLCAVKRTLESGSIVPGGGAVETALHIY 430
                 ********7777766677777****************************************************************************** PP

                 HHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHH....................HTTXTTEEEETTTTCEEECCCCTXEEEHHH CS
  Cpn60_TCP1 387 lkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlaklraah....................nkgekelgidvesgeiidlveagvvDplkv 465
                 l+e+a +v ++eqlai  fa++L++ipktLa Na  d+ e++a+lr++h                    +kg k++g+d+ +g+++d ++ gv++p   
  CCE31257.1 431 LEEFAGTVGSREQLAIGEFAQSLLIIPKTLAVNAAKDAAELVAQLRSRHalsqriqegdasedekslakKKGYKNYGLDLMRGKVVDELKLGVLEPSMS 529
                 ***********************************************************99999999988888************************** PP

                 HHHHHHHHHHHHHHHHCEEEEEXX CS
  Cpn60_TCP1 466 krqalksAteaastiLrideiika 489
                 k + lksA+ea  +i+rid  ik 
  CCE31257.1 530 KVRQLKSAVEACISIMRIDTLIKL 553
                 *********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4306.99
//
Query:       CCE31258.1  [L=234]
Description: probable ubiquinol-cytochrome-c reductase Rieske iron-sulfur protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-11   42.7   0.0    7.1e-11   41.9   0.0    1.4  1  Rieske    Rieske [2Fe-2S] domain
    1.5e-09   38.2   0.5    7.2e-09   36.0   0.5    2.1  1  UCR_TM    Ubiquinol cytochrome reductase transmembrane region


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   7.9e-15   7.1e-11      32      87 ..     166     220 ..     113     222 .. 0.76

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 7.9e-15
                 TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEETTSBEEE-TTHHHEEE CS
      Rieske  32 edgevyAlsdvCtHrgaplsegkidekgvleCpcHgwaydadGkvikgPaprplat 87 
                 ++ e+ ++ +vCtH+g+ + ++++d +    CpcHg+ yd +G+++kgPap +l++
  CCE31258.1 166 KKPEWLVMLGVCTHLGCVPIGEAGDFG-GWFCPCHGSHYDISGRIRKGPAPLNLEI 220
                 377888************988777544.677*******************998876 PP

>> UCR_TM  Ubiquinol cytochrome reductase transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.5   8.1e-13   7.2e-09       6      66 .]      55     105 ..      53     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 8.1e-13
      UCR_TM   6 vPdfsdyrresvkDpskssretedeRkaftylvlaggavvgayaaKsvVqkfvssmsASAD 66 
                 vPdfs+y  ++           e ++k f y+++++ ++++a +aKs+V++f+  +sASAD
  CCE31258.1  55 VPDFSKYMNKK----------GEGKNKLFHYFMVGTMGALSAAGAKSAVHEFLVNLSASAD 105
                 77777777765..........666789*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1964.30
//
Query:       CCE31259.1  [L=128]
Description: uncharacterized protein CPUR_05110 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1089.39
//
Query:       CCE31260.1  [L=646]
Description: uncharacterized protein CPUR_05111 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4731.55
//
Query:       CCE31261.1  [L=113]
Description: uncharacterized protein CPUR_05112 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 813.83
//
Query:       CCE31262.1  [L=369]
Description: uncharacterized protein CPUR_05113 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2731.04
//
Query:       CCE31263.1  [L=359]
Description: uncharacterized protein CPUR_05114 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-23   81.7  13.5    5.4e-14   51.7   0.3    3.0  3  PQ-loop   PQ loop repeat
  ------ inclusion threshold ------
       0.18   12.3   3.2       0.16   12.4   1.2    1.9  2  DUF2583   Protein of unknown function (DUF2583)
       0.67    9.6   3.5        1.6    8.3   0.8    2.6  2  Wzy_C     O-Antigen ligase


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   1.1   1.2e-13   7.1e-10       4      55 ..      24      75 ..      21      79 .. 0.93
   2 ?   -2.7   0.5      0.85   5.1e+03       5      18 ..     105     118 ..     104     118 .. 0.84
   3 !   51.7   0.3   9.1e-18   5.4e-14       2      55 ..     176     229 ..     175     235 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.2e-13
     PQ-loop  4 ilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllyliln 55
                ++++++lv+ l+sy+PQ +++  r  ++G+S++f+ll +++ +  ++++++ 
  CCE31263.1 24 VVSILILVGMLISYLPQHYRIISRGTAQGISPYFVLLGTTSATSGFANILTV 75
                6899**************************************9999998875 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.85
     PQ-loop   5 lgyislvlwlvsyi 18 
                 +++++++l lv+++
  CCE31263.1 105 MQWACFALILVLFL 118
                 78999999999886 PP

  == domain 3  score: 51.7 bits;  conditional E-value: 9.1e-18
     PQ-loop   2 seilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllyliln 55 
                 +++lg+++++l +v+y+PQi+++y+ k+++ lSi ++++++ G++l +++l+++
  CCE31263.1 176 ANFLGIMAAALAAVQYVPQIWTTYRLKHVGSLSIPMMCMQTPGGFLIAASLYAR 229
                 799*******************************************99999876 PP

>> DUF2583  Protein of unknown function (DUF2583)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.3   7.8e+03       9      29 ..      24      44 ..      19      56 .. 0.67
   2 ?   12.4   1.2   2.6e-05      0.16      14      55 ..     144     186 ..     141     190 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
     DUF2583  9 lGnvlmglGlllmvaslaysv 29
                +  +l+ +G+l+      y +
  CCE31263.1 24 VVSILILVGMLISYLPQHYRI 44
                445677777776655555555 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.6e-05
     DUF2583  14 mglGlllmvaslaysvlnqlpelelpellae.aallgifiGal 55 
                 +g+Gl+ ++ +l++++l+ ++++ lp+ l+  a++lgi+  al
  CCE31263.1 144 VGVGLVCVIHGLVVVILTGVFTIALPDHLTAwANFLGIMAAAL 186
                 69*************************9876367899999887 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.13   7.9e+02      22      66 ..      25      69 ..      17      80 .. 0.52
   2 ?    8.3   0.8   0.00027       1.6      23      71 ..     110     180 ..      95     275 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.13
       Wzy_C 22 llvalivlliifykrripfllllgilvgvilliilfvlstnletl 66
                + ++++v+++i y +   +++  g + g+   ++l+   +   ++
  CCE31263.1 25 VSILILVGMLISYLPQHYRIISRGTAQGISPYFVLLGTTSATSGF 69
                334444444444444443344444555555555555555555555 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00027
       Wzy_C  23 lvalivlliifykrri......................pfllllgilvgvilliilfvlstnletlknitk 71 
                 +++++vl++if++ r                       + +++ g++v++++++ +++l + l +++n   
  CCE31263.1 110 FALILVLFLIFFRYRDanvpfdeldgespkwqtavgvgLVCVIHGLVVVILTGVFTIALPDHLTAWANFLG 180
                 344555555555555567***********999999988888888888889999999999999999988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2698.61
//
Query:       CCE31264.1  [L=488]
Description: uncharacterized protein CPUR_05115 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.23   12.4  13.2         24    6.0   0.3    6.4  7  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.3    0.0013        24      14      34 ..      94     114 ..      74     117 .. 0.75
   2 ?   -2.2   0.0      0.53   9.5e+03      21      32 ..     161     171 ..     158     171 .. 0.73
   3 ?   -1.2   0.0      0.25   4.6e+03      15      30 ..     207     222 ..     191     226 .. 0.69
   4 ?    2.8   0.1     0.014   2.5e+02       5      29 ..     250     283 ..     246     300 .. 0.70
   5 ?    1.2   0.0     0.046   8.2e+02       9      26 ..     319     335 ..     312     348 .. 0.81
   6 ?    3.7   0.0    0.0074   1.3e+02      27      37 ..     390     400 ..     353     401 .. 0.73
   7 ?   -0.0   1.4      0.11   1.9e+03       7      29 ..     416     439 ..     411     445 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0013
                 EEEEEETTSSEEEEEETTSEE CS
        WD40  14 tslafspdgawlasGsdDgtv 34 
                 +s ++  dg+ ++++s D+t+
  CCE31264.1  94 SSAQWTADGTTILTSSSDHTI 114
                 46669999***998877***9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.53
                 TSSEEEEEETTS CS
        WD40  21 dgawlasGsdDg 32 
                 ++++l+ Gs+D+
  CCE31264.1 161 SQTFLV-GSRDH 171
                 448887.99997 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.25
                 EEEEETTSSEEEEEET CS
        WD40  15 slafspdgawlasGsd 30 
                 sl +++ g+ +++Gs 
  CCE31264.1 207 SLVWPSPGTHFICGSA 222
                 7778888888889985 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.014
                 EEEESS.SS....EEEEE....EETTSSEEEEEE CS
        WD40   5 rtltGH.ss....vtsla....fspdgawlasGs 29 
                 ++ +GH  +    v++la     s++g+++a+G+
  CCE31264.1 250 HIAKGHgVGikgtVSALAvsptDSQSGSLVAAGT 283
                 5557996335667889995565666666677764 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.046
                 SSSSEEEEEEETTSSEEE CS
        WD40   9 GHssvtslafspdgawla 26 
                 G+ ++  + +sp g++l+
  CCE31264.1 319 GQ-GIVQVVWSPCGRYLV 335
                 44.577999*******86 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.0074
                 EEETTSEEEEE CS
        WD40  27 sGsdDgtvriW 37 
                 sG  Dg+v +W
  CCE31264.1 390 SGAQDGSVIVW 400
                 5677******* PP

  == domain 7  score: -0.0 bits;  conditional E-value: 0.11
                 EESS.SSEEEEEEETTSSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGs 29 
                 + +H s+v+s   +p+g+  a++s
  CCE31264.1 416 WNAHsSPVCSTILHPSGSVTATCS 439
                 5689777*9999999999977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3881.73
//
Query:       CCE31265.1  [L=282]
Description: uncharacterized protein CPUR_05116 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.4    8.9  11.3       0.41   10.6   8.2    1.6  2  Mucin     Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   8.2   2.3e-05      0.41      24     132 ..      13     124 ..       9     128 .. 0.77
   2 ?   -2.4   0.0      0.24   4.2e+03      83     106 ..     165     187 ..     157     201 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.3e-05
       Mucin  24 tangeGqsdaavveaaegqskltttttttkppttttttt.....tasttittkttkattttttttttttateaPs.davttaeaPtttttrapsrlrev 116
                 ta+g     ++v  +a gq+ l+ +++t++ ++t+t  +      + t++t  t+  ++  +t++   t  + P+ +a+t a  P+++  r+ ++   +
  CCE31265.1  13 TASG---LATTVLPSAPGQPVLKLASVTVQLTATPTSLSkpialGSDTAKTWATSSIPNMGNTDSDYPTVNHDPQpSATTGATTPSSQGIRSRTTAVII 108
                 5555...5567778899******************9999888875666666677777888888887777776665236777888888888877777889 PP

       Mucin 117 dGslsssaWvcaPLll 132
                  G++++ +++c+  +l
  CCE31265.1 109 GGTVGGIVFICIMAVL 124
                 99******99986665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.24
       Mucin  83 tttttateaPsdavttaeaPtttt 106
                 t   + ++aP     ++e P+t+t
  CCE31265.1 165 TEIRALADAPP-MNRSSEGPSTET 187
                 44556677777.456788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2088.36
//
Query:       CCE31266.1  [L=705]
Description: uncharacterized protein CPUR_05117 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-09   35.1  25.4      6e-08   32.2  25.4    2.1  1  Ion_trans  Ion transport protein
  ------ inclusion threshold ------
      0.034   14.6   1.1      0.061   13.8   0.1    2.0  2  PNTB_4TM   4TM region of pyridine nucleotide transhydrogenase
      0.061   12.6   0.0        0.1   11.9   0.0    1.3  1  Phage_GPD  Phage late control gene D protein (GPD)


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2  25.4     1e-11     6e-08       6     240 ..     296     511 ..     289     516 .. 0.74

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1e-11
                 HHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH........HHHH...... CS
   Ion_trans   6 lfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl........vlse...... 89 
                 +f+++l+l+ +v+++ ++      + + t  e++ +v++a f+ + l +++ +g      Y +d+wn++D++++l++++ +        +         
  CCE31266.1 296 FFVVFLVLYYSVLVTRDD------T-RlTMTEVCLFVWIAAFFYDELSEWFDAGS---VFYATDIWNVFDMIMILIGFVFAalriiglvR--Hdntlne 382
                 344455555555554422......2.13799************************...*********************88566555541..0456676 PP

                 HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHH CS
   Ion_trans  90 esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfr 188
                 +++ +ls+  lf + r+  ++s+++ + tlv +l+++ kd++++++l++++ f f   +  +  +                     + +++   + l+r
  CCE31266.1 383 TAFNVLSLEALFMMPRICSILSMSPYWGTLVPCLKEMGKDFVKFMVLVVIIYFGFLTTFSLIG-R--------------------DVFTIGRMTVVLTR 460
                 67777777777788888888888888899999******************9999877763333.1....................22256666666666 PP

                 HHTTSSHHHHHHHHHHHS.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 189 lmttegwgdilyatldek.skvaliyfvifiilgsflllNlliaviadnfqel 240
                 + ++  +     + +d+  ++++  +++ifi l s+ll   l ++ +++f+++
  CCE31266.1 461 IFFGASFV--GFDIMDQIdPFFGPPLMIIFITLTSILLQGSLTGMLSNSFSRV 511
                 55555333..3455555557778889999999999999999999999999876 PP

>> PNTB_4TM  4TM region of pyridine nucleotide transhydrogenase, mitoch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.4   1.4e+04      51      63 ..     355     367 ..     340     372 .. 0.52
   2 ?   13.8   0.1     1e-05     0.061       4      48 ..     461     506 ..     458     529 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.4
    PNTB_4TM  51 akvlgaiavvlas 63 
                   ++ +i+ v+a+
  CCE31266.1 355 DMIMILIGFVFAA 367
                 3334444444444 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1e-05
    PNTB_4TM   4 vfvLalfvGyeviwkVtpaLhtPLmsvtnaisgiiivgallalg.s 48 
                 +f+ a fvG+ ++ +++p +  PLm +  ++ +i + g+l+ +  +
  CCE31266.1 461 IFFGASFVGFDIMDQIDPFFGPPLMIIFITLTSILLQGSLTGMLsN 506
                 78889**********************************9987643 PP

>> Phage_GPD  Phage late control gene D protein (GPD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.7e-05       0.1      85     147 ..      78     138 ..      75     172 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
   Phage_GPD  85 qnktvpdIleavlaehgiavekrfrlersypkreycvQyrESdlaFvsRLleeeGifyffeh.e 147
                 qn t p+I+ a+la   ++ +++++  + +++r++ +    + + F++RL e++ + ++  +  
  CCE31266.1  78 QNCTHPAIVNALLALK-WHYAAHNEHLSIGETRSHACEI--TAWRFLTRLSERQAVEFCLYEiP 138
                 89999*********53.333333333333**********..***************99976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5045.91
//
Query:       CCE31267.1  [L=302]
Description: uncharacterized protein CPUR_05118 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2326.30
//
Query:       CCE31268.1  [L=562]
Description: related to bud emergence mediator BEM1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-27   92.6   0.0      2e-13   49.7   0.0    2.8  2  SH3_1     SH3 domain
    2.6e-16   59.2   0.1    1.6e-08   34.2   0.1    2.8  2  SH3_9     Variant SH3 domain
    8.7e-14   51.5   0.0    1.7e-13   50.5   0.0    1.5  1  PX        PX domain
    8.7e-12   44.5   0.0    7.5e-08   31.9   0.0    2.6  2  SH3_2     Variant SH3 domain
      2e-08   34.1   0.1    3.6e-08   33.2   0.1    1.4  1  PB1       PB1 domain


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   5.6e-17     2e-13       1      47 [.      39      87 ..      39      88 .. 0.94
   2 !   40.0   0.0   5.8e-14   2.1e-10       1      48 []     153     201 ..     153     201 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 5.6e-17
                EESSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEEEETTS.TEEEEEE CS
       SH3_1  1 iAlYDYeaeesdELsfkkGDviivleksed.gWwkgrlkgt.gkeGliP 47
                +AlYDYea++s+EL f kGD ++v+ +++d +W+++ +      +Gl+P
  CCE31268.1 39 RALYDYEAQSSQELGFSKGDFFHVIGREDDeDWYEACNPALpDARGLVP 87
                7************************************997777889988 PP

  == domain 2  score: 40.0 bits;  conditional E-value: 5.8e-14
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTS.TEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgt.gkeGliPs 48 
                 i++YD+ a+++dEL  +kG++ii++++s ++W+ ++ + + g  GliP+
  CCE31268.1 153 IVMYDFVAQRADELGATKGEQIIIIAQSTAEWFVAKPIARlGGPGLIPV 201
                 689**************************************99*****5 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   4.5e-12   1.6e-08       1      47 [.      40      90 ..      40      92 .. 0.91
   2 !   22.1   0.0   2.9e-08    0.0001       1      49 []     154     205 ..     154     205 .. 0.96

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 4.5e-12
       SH3_9  1 AlypyepreddeLsLqrGDvitvi.eesedgWlegsl...tGrtGlvPany 47
                Aly+ye+++ +eL +++GD++ vi +e++++W+e+ +      +GlvP+++
  CCE31268.1 40 ALYDYEAQSSQELGFSKGDFFHVIgREDDEDWYEACNpalPDARGLVPVSF 90
                8***********************88899******9665588******997 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 2.9e-08
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegs...ltGrtGlvPanyve 49 
                 ++y+++++ +deL   +G+ i++i +s   W+ ++   + G  Gl P++yve
  CCE31268.1 154 VMYDFVAQRADELGATKGEQIIIIAQSTAEWFVAKpiaRLGGPGLIPVSYVE 205
                 89************************9*******998779999********7 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   4.8e-17   1.7e-13      16     112 ..     319     419 ..     309     420 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 4.8e-17
                 TSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHT.........TSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHH.SH CS
          PX  16 skkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfp.........rvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrn.se 104
                 s+++ ++++   l++g ++w++ R Y+dF++++  Ll +fp         ++++P++P++v++++     ++++e r + L++y+++ll +pe+++ ++
  CCE31268.1 319 SDEKFWFVVITVLEDG-RHWQLLRYYEDFYDFQIALLTEFPaeagnagnqKRTLPYMPGPVSYVT-----RDITEGRLHNLDAYVKNLLGQPEYISrCN 411
                 6778899999999999.**********************************************99.....***************************** PP

                 HHHHHHHS CS
          PX 105 vlteFLev 112
                  +++F+ +
  CCE31268.1 412 LVKQFFAP 419
                 *****976 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   2.1e-11   7.5e-08       2      42 ..      38      76 ..      37      92 .. 0.83
   2 !   10.1   0.0   0.00014      0.49       2      56 ..     152     206 ..     151     207 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 2.1e-11
                EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE CS
       SH3_2  2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev 42
                +ra+ dy++++  eL f kGd+++v+  g++d+++w+e+ +
  CCE31268.1 38 IRALYDYEAQSSQELGFSKGDFFHVI--GREDDEDWYEACN 76
                89************************..999999***9866 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00014
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE....CCCEEEEEGCGEEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev....gGrvGlfPsslvee 56 
                 ++++ d+v++  +eL  +kG+ i ++    ++  + w++++     G  Gl+P s+ve+
  CCE31268.1 152 AIVMYDFVAQRADELGATKGEQIIII---AQSTAE-WFVAKpiarLGGPGLIPVSYVEI 206
                 57888*********************...444444.66655434349999999999986 PP

>> PB1  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1     1e-11   3.6e-08       2      68 ..     484     551 ..     483     560 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1e-11
                 EEEEEEETTEEEEEEEEGSSS-HHHHHHHHHHHHTST.CCSEEEEEEETTS.SEEEESSHHHHHHHHHH CS
         PB1   2 vdlKlrygggirrelsvssnisfeeLrakvekrfkls.dedvklkYpdedg.dlVtitsDeDLeealee 68 
                 +++K +++g+    ++v+s++++ +L++kv++r+k++  e++ + Y+de    ++ + sD+DL+ al+ 
  CCE31268.1 484 MKVKMYFNGDLIA-IRVPSDVNYPQLCDKVRERLKIPqAEQLEIYYKDEPTgNKLNLMSDDDLDFALQR 551
                 79***********.***********************************999***********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 4030.61
//
Query:       CCE31269.1  [L=63]
Description: uncharacterized protein CPUR_05120 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.27s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 484.83
//
Query:       CCE31270.1  [L=502]
Description: uncharacterized protein CPUR_05121 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-19   69.0   1.0    6.1e-17   61.9   0.9    2.2  1  SAC3_GANP  SAC3/GANP family


Domain annotation for each model (and alignments):
>> SAC3_GANP  SAC3/GANP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.9   3.4e-21   6.1e-17      41     246 ..     260     439 ..     222     444 .. 0.83

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 3.4e-21
                 XXXXXXXXXXXXXXX-----HHHHHHHHHHHHHHTG..G..GTTTCHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHHHHHHHHTTS.---C CS
   SAC3_GANP  41 KeysRsaagqeeplpsdlRppevLkkTldYLlkeildreeeelaevydFiwDRtRaiRqDltiqnlskaeaveilerivrfhilslhrlceepessfde 139
                 K+y R    +++p ps++Rp ++L++Tld L k+         +  y++i D +++ RqDlt+q+++++ +v+++e  +r+       l + +      
  CCE31270.1 260 KKYLR---LTAPPVPSNVRPEHILRQTLDLLKKKWR------KEGNYSYICDQFKSMRQDLTVQRIKNDFTVSVYEIHARIA------LEKGD------ 337
                 88888...67899****************9886665......4578******************************887764......33333...... PP

                 HHHHHHHHHHHHHHHHHHHHHH...---TTHHHHHHHHHHHTTT-...HHHHHHHCTS-HHHHTSHHHHHHHHHHHHH--TTHHHHHHHHTTS-HHHHH CS
   SAC3_GANP 140 qqnleqLqkclqsLlelYddlrkkkeelpneaefrayylLlnlrd...pdilrevqelpseilkspevqlalklvaalqennyvrffklvkevsylqac 235
                    + + ++c ++L+ lY     k+    n  ef+ay +L+ +++   + + +++ +l +   ++++v+ al++++al+ +ny +ff+l+ +++ + a 
  CCE31270.1 338 ---IGEYNQCQTQLRSLYALGL-KG----NPIEFKAYRILYFIHTanrTGLNDTIADLTTAEKEEKPVKHALQVRSALALGNYHKFFQLYLNTPNMGAY 428
                 ...5566789999999998876.44....899********9885533367788899******************************************* PP

                 HHGGGHHHHHH CS
   SAC3_GANP 236 llerhfnevRr 246
                 l+ ++ ++v+ 
  CCE31270.1 429 LMDIYKPDVKL 439
                 **999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3809.40
//
Query:       CCE31271.1  [L=645]
Description: related to VPS36 protein, involved in vacuolar protein sorting [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-42  143.6   0.1    7.5e-42  143.2   0.1    1.2  1  EAP30           EAP30/Vps36 family
    6.7e-24   83.9   0.0    1.1e-23   83.1   0.0    1.4  1  Vps36_ESCRT-II  Vacuolar protein sorting protein 36 Vps36
    3.1e-22   77.7   2.6    3.1e-22   77.7   2.6    2.7  2  Vps36-NZF-N     Vacuolar protein sorting 36 NZF-N zinc-finger
     0.0072   16.4   6.0      0.059   13.4   0.5    2.4  2  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
  ------ inclusion threshold ------
      0.013   14.8   1.8      0.013   14.8   1.8    2.6  3  zf-RanBP        Zn-finger in Ran binding protein and others
      0.072   13.0   0.0       0.13   12.1   0.0    1.4  1  GRAM            GRAM domain
        1.4    9.0   4.9       0.38   10.8   0.9    2.0  2  DZR             Double zinc ribbon
        6.7    7.8   7.7         61    4.9   0.7    3.5  3  zf-C2H2_4       C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.1   3.4e-45   7.5e-42       1     236 []     365     604 ..     365     604 .. 0.91

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 3.4e-45
       EAP30   1 vGiagl.qrreqtaaeyqdlgaellaealqdleallakfkesLvklaekhkakiksdpafraqftk.....mcaslGvdplssk......kseslgfle 87 
                 +Giagl q   + ++++    + l+ +a++dleal++++ke +v+lae+++++ +  ++  ++ ++     ++a+lG+  +++k      +sesl    
  CCE31271.1 365 AGIAGLeQLGLNMHKNN----EMLIGSAFEDLEALMSSAKE-VVALAERFARQSNVANGGATAEENailaeSAAQLGM--MTTKdivgsgSSESL---- 452
                 6*****999********....********************.**********9987777555544489*99******9..444556654467777.... PP

       EAP30  88 llglgdfyyeLavqivevclat....raengglisleelyalvnrarggvalvspdDllraiekl..lvlg.......sglsvlqvggkkvvrSvptel 173
                       ++ eL++++++++ ++     ++ gg+i+l +l+a++nrarggv+lvsp D+++a++++  l+l+       sg++v+q           +++
  CCE31271.1 453 ------YLSELSRNLADFLADDvrgvLKRAGGIITLVDLWAMFNRARGGVELVSPMDFEKAARLWesLKLPvrlrtfrSGVMVVQ-----------GRD 534
                 ......**************99988877889**********************************665555**************...........*** PP

       EAP30 174 ntdqvevlevakrlvsllaekssg..............ggvtaselaeeeenlgwsvarakeaLeelereGllwvDd 236
                 +td+    +++k+l ++l++ ++               +gvta e a++   +gws+++a+e+L ++e++G+l++++
  CCE31271.1 535 CTDE----STMKSLIDWLNDLHEFpperdvtwdwrefgRGVTALETAQR---FGWSIGVAEEELLMAEEQGVLCREE 604
                 ****....***********998779999*******99999******999...***********************86 PP

>> Vps36_ESCRT-II  Vacuolar protein sorting protein 36 Vps36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   5.1e-27   1.1e-23       3      89 ..       9      92 ..       7      95 .. 0.95

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 5.1e-27
  Vps36_ESCRT-II  3 ttsgrpvLeenEsiilvqdnVglYegdeKilnrqnGrlyLTthriiyvdsadpkkeslslelklvesvsekelssgflrsspkiilk 89
                    tt  rp   ++E  ++vqdnVglYeg+ K  n qnG++yLT+hri yvd+a+p ++sl+l+lk+v +    e  +gf++sspki+++
      CCE31271.1  9 TTALRPSYLPDEALLFVQDNVGLYEGKLKLPNQQNGQVYLTSHRICYVDKAEPRTNSLALDLKDVDRY---EAYAGFFKSSPKITIF 92
                    6778999999**********************************************************...*************987 PP

>> Vps36-NZF-N  Vacuolar protein sorting 36 NZF-N zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   2.6   1.4e-25   3.1e-22       3      62 ..     134     196 ..     132     199 .. 0.94
   2 ?   -0.1   2.6      0.28   6.3e+02      12      20 ..     244     252 ..     238     279 .. 0.72

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 1.4e-25
  Vps36-NZF-N   3 keavtatWvCpICsfsNevpsnfdp...nastplPpClaCGvkpdlelikksikasasskkse 62 
                  ++ +tatWvC+ICsfsN++p nfdp   n +tplPpClaCG+kp+l++++k+++ +as+++s 
   CCE31271.1 134 PQITTATWVCTICSFSNPIPVNFDPaaaNVHTPLPPCLACGIKPSLAHVLKAAINNASQRPSP 196
                  67899***********************9*****************************99875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.28
  Vps36-NZF-N  12 CpICsfsNe 20 
                  Cp C+fsN+
   CCE31271.1 244 CPRCTFSNH 252
                  666666665 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.5   2.6e-05     0.059      22      37 ..     139     154 ..     135     156 .. 0.85
   2 !    5.3   0.7    0.0092        21      12      31 ..     244     263 ..     241     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.6e-05
  zf-Sec23_Sec24  22 krwiCnfCnhknevpp 37 
                      +w+C +C+++n++p 
      CCE31271.1 139 ATWVCTICSFSNPIPV 154
                     68************96 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0092
  zf-Sec23_Sec24  12 NpfckidfggkrwiCnfCnh 31 
                     +p c++ ++ ++  C++C+ 
      CCE31271.1 244 CPRCTFSNHPSLLSCEICGA 263
                     899***************86 PP

>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.4    0.0012       2.7       5      15 ..     141     151 ..     139     152 .. 0.92
   2 ?   -3.7   0.4       3.5   7.9e+03      21      25 ..     170     174 ..     170     174 .. 0.87
   3 ?   14.8   1.8   5.6e-06     0.013       7      26 ..     244     263 ..     243     265 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0012
                 EE-SSS--EEE CS
    zf-RanBP   5 WdCskClvqNf 15 
                 W C+ C+++N+
  CCE31271.1 141 WVCTICSFSNP 151
                 **********6 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.5
                 -TTT- CS
    zf-RanBP  21 CvaCq 25 
                 C+aC+
  CCE31271.1 170 CLACG 174
                 99996 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 5.6e-06
                 -SSS--EEESSSSB-TTT-- CS
    zf-RanBP   7 CskClvqNfawstkCvaCqa 26 
                 C+ C+++N ++ + C++C+a
  CCE31271.1 244 CPRCTFSNHPSLLSCEICGA 263
                 *******************9 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.9e-05      0.13      31      67 ..      42      78 ..      13      99 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.9e-05
                EEEEEEEESSEEEEEE-STT---E.EEEEGGGEEEEEE CS
        GRAM 31 vqGrlyltnyrlcFrskplgsskk.vvlpladikriek 67
                 +G++ylt++r+c+ +k   + ++ + l l+d+ r e 
  CCE31271.1 42 QNGQVYLTSHRICYVDKA-EPRTNsLALDLKDVDRYEA 78
                57************9998.5555558888888887776 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2       1.2   2.6e+03      30      35 ..     169     174 ..     132     181 .. 0.57
   2 ?   10.8   0.9   0.00017      0.38       1      24 [.     244     267 ..     244     282 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
         DZR  30 rCpsCg 35 
                  C +Cg
  CCE31271.1 169 PCLACG 174
                 344443 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00017
         DZR   1 CpqCgeelppdarfCseCgtklka 24 
                 Cp+C   ++p+   C+ Cg++l +
  CCE31271.1 244 CPRCTFSNHPSLLSCEICGASLLS 267
                 ********************9854 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3       0.1   2.3e+02       2      12 ..     142     150 ..     141     154 .. 0.85
   2 ?    4.9   0.7     0.027        61       1      17 [.     242     256 ..     242     257 .. 0.85
   3 ?    2.7   0.0      0.13   2.9e+02       2      14 ..     257     269 ..     256     271 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.1
   zf-C2H2_4   2 kCpiCgksFss 12 
                  C+iC  sFs+
  CCE31271.1 142 VCTIC--SFSN 150
                 7****..*987 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.027
   zf-C2H2_4   1 fkCpiCgksFsskkaLl 17 
                 f Cp C  +Fs++ +Ll
  CCE31271.1 242 FSCPRC--TFSNHPSLL 256
                 89****..**9988875 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.13
   zf-C2H2_4   2 kCpiCgksFsskk 14 
                  C+iCg+s  s++
  CCE31271.1 257 SCEICGASLLSQS 269
                 6*****9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4636.81
//
Query:       CCE31272.1  [L=401]
Description: uncharacterized protein CPUR_05123 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-23   82.4   2.5    1.3e-23   82.4   2.5    2.4  2  HTH_ABP1_N   Fission yeast centromere protein N-terminal doma
    2.7e-17   62.5   0.9    2.4e-16   59.5   0.1    2.8  3  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
  ------ inclusion threshold ------
       0.22   11.3   4.1      0.065   13.0   0.6    1.7  2  G6B          G6B family
        6.8    6.2  15.5         11    5.5  15.5    1.3  1  Spt20        Spt20 family


Domain annotation for each model (and alignments):
>> HTH_ABP1_N  Fission yeast centromere protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   2.5     3e-27   1.3e-23       2      59 ..      34      91 ..      32      93 .. 0.97
   2 ?   -4.6   3.7         4   1.8e+04      17      26 ..     267     276 ..     256     281 .. 0.54

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 3e-27
  HTH_ABP1_N  2 RkaiskeqkkaLRawafqqnprpsqkaliaWFeqeygqkisqstvSeiLSskYayLDd 59
                R++++ +q+++LR+wa +q+ rps+ka+i+WF ++ygq+isqstvS++LS kY+ LD 
  CCE31272.1 34 RHSLTLDQRRELRRWANAQSIRPSHKACIDWFHSQYGQMISQSTVSHSLSPKYSRLDG 91
                99*******************************************************7 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 4
  HTH_ABP1_N  17 afqqnprpsq 26 
                  +qq+++p +
  CCE31272.1 267 QQQQQQQPEH 276
                 3344444444 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.55   2.5e+03       3      23 ..      40      57 ..      38      63 .. 0.72
   2 ?   -0.4   0.0      0.27   1.2e+03       6      24 ..      59      75 ..      57      79 .. 0.74
   3 !   59.5   0.1   5.3e-20   2.4e-16       1      64 [.     106     170 ..     106     172 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.55
                 HHHHHHHHHHHHHC-CT---S CS
  HTH_Tnp_Tc5  3 elEkaLleWirqlrergipit 23
                 ++ + L++W + +    i+++
   CCE31272.1 40 DQRRELRRWANAQS---IRPS 57
                 89999999998854...5555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.27
                 HHHHHHHHHHC-CT---SC CS
  HTH_Tnp_Tc5  6 kaLleWirqlrergipitg 24
                 ka+++W++ +   g  i++
   CCE31272.1 59 KACIDWFHSQY--GQMISQ 75
                 89******976..555554 PP

  == domain 3  score: 59.5 bits;  conditional E-value: 5.3e-20
                  THHHHHHHHHHHHHHC-CT---SCHHHHHHHHHHH.HHSSSCT-TT-S--CHHHHHHHHHTS--X CS
  HTH_Tnp_Tc5   1 spelEkaLleWirqlrergipitgelirekAqela.slaadlgepdfkaSkgWldrFkkRhglkr 64 
                  +p++Ek +l W++q+ ++g+ +t+  + ekA+ ++ +l+++ ge+ + +S gW++rFkkR+gl +
   CCE31272.1 106 WPDVEKLVLLWYQQMLASGRQPTNDELGEKAKSIFvQLPRYRGESAPEFSPGWIHRFKKRYGLLS 170
                  9********************************999*************************9855 PP

>> G6B  G6B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.43   1.9e+03     176     218 ..      18      61 ..       4      63 .. 0.64
   2 ?   13.0   0.6   1.5e-05     0.065     120     223 ..     206     312 ..     184     313 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.43
         G6B 176 keeepkeagdldqeksllyadldh.ialrrprrlsavvPadast 218
                 k+   k a+ +++e++ +   ld+   lrr  + +++ P++ ++
  CCE31272.1  18 KDAAEKAADASSKERERHSLTLDQrRELRRWANAQSIRPSHKAC 61 
                 33344555556667766777776415788888888888887765 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.5e-05
         G6B 120 GssysqllipllgaglalglgalGvawwlrrrsppallrplprfa...plvkaeaqrevkeeepkeagdldq.eksllyadldhialrrprrlsavvPa 214
                  s+  + ++ ++g+  +l+  al     lrr s ++ + ++++++   p  + +aq++ ++++ ++++++++ +++ lyad d  ++ ++   +    +
  CCE31272.1 206 PSTIREQVLRVVGVDATLSTCALVRDEILRRLSISHHQASMAQLHlpqP-PSSQAQQPHHQQQQQQQQQPEHsQSQDLYADDDPEVVLQNALRQLQQEE 303
                 45555556778999999***********************999884322.2334555555555555555544245568999986555444434444555 PP

         G6B 215 dastiyavv 223
                 +a+   avv
  CCE31272.1 304 EAAEEQAVV 312
                 566666665 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  15.5    0.0026        11      94     155 ..     242     309 ..     237     331 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0026
       Spt20  94 hrnsvaqsqktq.dqkqsqqnqqqqqqqqqqqqqqqq...................qqeqqqqqnekdsttteekekksksk 155
                 h  s+aq    q +++q+qq  +qqqqqqqqq++ +q                   q               +++e++++++
  CCE31272.1 242 HQASMAQLHLPQpPSSQAQQPHHQQQQQQQQQPEHSQsqdlyadddpevvlqnalrQ--------------LQQEEEAAEEQ 309
                 555555554444444455444444444444444444455899776666665443330..............22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2006  (0.111886); expected 358.6 (0.02)
Passed bias filter:                      810  (0.0451782); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 2952.56
//
Query:       CCE31273.1  [L=68]
Description: uncharacterized protein CPUR_05124 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-26   91.1   0.1    4.8e-26   90.9   0.1    1.0  1  ATP19     ATP synthase subunit K


Domain annotation for each model (and alignments):
>> ATP19  ATP synthase subunit K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.1   2.7e-30   4.8e-26       3      68 .]       5      67 ..       3      67 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 2.7e-30
                XX---STTSS--S-SHHHHHHHHH--XXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXX CS
       ATP19  3 aaYtIaGravkshyLAlgtLgttglivylamggskkkkaaaappinasssdEedfIknFlaeaeke 68
                ++YtIaGr+v shyLA+g+Lg++++++y+a++g+kk++   +pp+na+ss+E++fI +F++++ek+
  CCE31273.1  5 QTYTIAGRQVASHYLAMGVLGAMFGGAYWATSGPKKPA---TPPVNAASSEEAAFITKFMENQEKK 67
                78************************************...9*********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 562.73
//
Query:       CCE31274.1  [L=285]
Description: uncharacterized protein CPUR_05125 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-82  275.3   0.0    2.4e-82  275.0   0.0    1.1  1  MTP18     Mitochondrial 18 KDa protein (MTP18)


Domain annotation for each model (and alignments):
>> MTP18  Mitochondrial 18 KDa protein (MTP18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.0   0.0   1.4e-86   2.4e-82       1     171 []      70     247 ..      70     247 .. 0.97

  Alignments for each domain:
  == domain 1  score: 275.0 bits;  conditional E-value: 1.4e-86
       MTP18   1 selryaayaarlrtillsahRyvaytsdigEsfrPvahpalVkaaYgiswaYilgDvayegykaklrneealepeleaakkake.......eeeaelkt 92 
                 s+lryaaya+rlrtillsahRyvaytsdigEsfrPvahp+lV+aaYgisw+YilgDv++egy+a+++n++ l+p+l+ ++++++       ++++++++
  CCE31274.1  70 SNLRYAAYATRLRTILLSAHRYVAYTSDIGESFRPVAHPKLVRAAYGISWLYILGDVSHEGYRAYWHNQRILNPQLRLTARQERitglpaeHSNSNIAP 168
                 689*************************************************************************99999988999998777788888 PP

       MTP18  93 kkveeledyrlvmakravFqsiASmaLPaltiHsvVkysgkalknvknkrlrtwgpialgLavvPaLpylfDepveeav 171
                   v+ led+r+vm++r+vFqs+ASm+LPa+tiHsvV+ysg+alk+vkn+++rtwgpi+lgLavvP+Lp lfDepve+av
  CCE31274.1 169 GVVSPLEDWRTVMVQRGVFQSVASMGLPAFTIHSVVRYSGQALKKVKNPTIRTWGPIGLGLAVVPFLPWLFDEPVENAV 247
                 9***************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2308.33
//
Query:       CCE31275.1  [L=309]
Description: uncharacterized protein CPUR_05126 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-25   87.6  23.3    2.4e-12   46.8   9.2    2.2  2  zf-AN1        AN1-like Zinc finger
  ------ inclusion threshold ------
      0.022   15.0  20.4      0.026   14.7   4.0    3.0  2  IBR           IBR domain, a half RING-finger domain
       0.16   12.3  14.6       0.31   11.4   5.6    2.3  2  Transp_Tc5_C  Tc5 transposase C-terminal domain


Domain annotation for each model (and alignments):
>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   9.2     4e-16   2.4e-12       1      38 [.      30      67 ..      30      69 .. 0.97
   2 !   46.8   6.2     4e-16   2.4e-12       1      38 [.      99     140 ..      99     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 4e-16
      zf-AN1  1 CsfksCkkkdflpfkCryCgkvFClkHrlpedHdCkkl 38
                C+f+ C+++dflpf C++C+k+FCl+Hr++ +H+C ++
  CCE31275.1 30 CQFEYCNQLDFLPFLCQSCSKTFCLDHRTEFTHKCANA 67
                ***********************************986 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 4e-16
      zf-AN1   1 CsfksCkkkdflp....fkCryCgkvFClkHrlpedHdCkkl 38 
                 C+ ++Ck+ + ++    ++C++C++++ClkHrl edHdCk+l
  CCE31275.1  99 CASPECKTVVGTSlvpgVHCDTCNRDYCLKHRLREDHDCKSL 140
                 99********544445***********************986 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   8.5    0.0084        50      38      57 ..      29      62 ..       9      66 .. 0.67
   2 ?   14.7   4.0   4.4e-06     0.026      18      53 ..      96     130 ..      86     139 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0084
         IBR 38 s.............vtCskCgfefCfnCkkew.H 57
                +               C++C++ fC++++ e+ H
  CCE31275.1 29 HcqfeycnqldflpFLCQSCSKTFCLDHRTEFtH 62
                1444555557777677*************99855 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.4e-06
         IBR  18 lkwCprpdCeaiieksegcksvtCskCgfefCfnCk 53 
                  k C +p+C++++  s     v+C +C+ ++C++++
  CCE31275.1  96 QKPCASPECKTVVGTSLVP-GVHCDTCNRDYCLKHR 130
                 356**********888884.479**********998 PP

>> Transp_Tc5_C  Tc5 transposase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.6   5.1e-05      0.31      28      63 .]      28      64 ..      11      64 .. 0.84
   2 ?    6.0   1.6    0.0025        15      30      63 .]      99     137 ..      89     137 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.1e-05
  Transp_Tc5_C 28 edCkiegCselafi..kCarCkellCFdHfvvsekhlC 63
                  ++C++e C++l f+   C  C +++C dH   + +h C
    CCE31275.1 28 KHCQFEYCNQLDFLpfLCQSCSKTFCLDHRT-EFTHKC 64
                  68***********8557************87.677777 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0025
  Transp_Tc5_C  30 CkiegCse......lafikCarCkellCFdHfvvsekhlC 63 
                   C+  +C+       +  ++C  C++  C +H + +e h C
    CCE31275.1  99 CASPECKTvvgtslVPGVHCDTCNRDYCLKHRL-REDHDC 137
                   555555441110014568*************88.577766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2479.45
//
Query:       CCE31276.1  [L=954]
Description: related to xeroderma pigmentosum group C complementing factor (homolog to excision repair protein RAD4) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-33  114.6   0.8    2.9e-33  114.6   0.8    2.8  2  Rad4            Rad4 transglutaminase-like domain
    1.4e-27   95.9   0.8    3.3e-27   94.7   0.8    1.6  1  BHD_3           Rad4 beta-hairpin domain 3
      1e-18   66.9   0.9    1.7e-18   66.2   0.1    1.8  2  BHD_1           Rad4 beta-hairpin domain 1
      3e-14   53.7   0.4      3e-14   53.7   0.4    5.8  8  BHD_2           Rad4 beta-hairpin domain 2
     0.0011   19.3   0.0     0.0071   16.8   0.0    2.4  1  Transglut_core  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> Rad4  Rad4 transglutaminase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.24   8.5e+02      17      48 ..     224     255 ..     211     262 .. 0.72
   2 !  114.6   0.8     8e-37   2.9e-33      18     146 ..     460     611 ..     403     612 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.24
                 -......--TTHHHHHTTS-SEEEEEEETTTT CS
        Rad4  17 kkketkkkkkrlkdkdlpypvyWvEvfspekk 48 
                 k++etk+k+ ++++k+ +++  W E+ ++ ++
  CCE31276.1 224 KRSETKSKNGAKGKKNARKSRHWDEAAKKLEQ 255
                 24566777888888888999999999888776 PP

  == domain 2  score: 114.6 bits;  conditional E-value: 8e-37
                 ......--TTHHHHHTTS-SEEEEEEETTTTEEEEEESSSS-EE....SS--TTS--...TGGGS----EEEEE-TTS-EEE-HHHH-T..TCCCCHGG CS
        Rad4  18 kketkkkkkrlkdkdlpypvyWvEvfspekkkwisvdplvgsti....ekkeilepl...aekakqvlsYVvAfdsdgsakDVTrRYls.dysnsktkk 108
                  +++ + k r++d dl yp+yW+Ev+sp++kk+++vdp+v++++    e+ e++ep+   a+ka+qv+sYVv+++sdg+akDVT RYl+ ++ +++tk+
  CCE31276.1 460 TPKKGAPKVRKYDTDLGYPHYWTEVLSPVTKKYLPVDPIVKNIVatnrELVESFEPRgqkADKARQVISYVVGYSSDGTAKDVTIRYLKrQVTPGRTKG 558
                 4667888999******************************9999*********************************************999******* PP

                 GSGG.............GSHHHHHHHHHHHHHH--S---H....HHHHHHHHH CS
        Rad4 109 lrve.............kskeekkWfesvlrplekrnkert..evdalEdael 146
                  r++             k++ee +Wf+  ++ ++++++ ++  e+d+ Ed ++
  CCE31276.1 559 VRMPmektpvynrngkvKRYEEFDWFRAAMSGYRRGSRAHPitEIDEEEDSTD 611
                 ****************************************9778888888775 PP

>> BHD_3  Rad4 beta-hairpin domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.8   9.3e-31   3.3e-27       1      74 [.     763     834 ..     763     835 .. 0.94

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 9.3e-31
                 ----TTS-EE-SSGGGS-TTEEEEE-TTHHHHHHHCT---EEEEEEEEE-SS-EE..EEEEEEEEEGGGHHHHH CS
       BHD_3   1 vPkNeygnieifkpsmlPegavhislkgaakaakklgidyapAvvGFefkgrrgkgiPvidGivVaeedeeavl 74 
                 +PkNeygni++f ++m+P+gavhi+ +g+ k++k+l+idya+AvvGFef++r   ++Pvi+G+v+aee+ + v+
  CCE31276.1 763 IPKNEYGNIDLFAEHMCPQGAVHIPFRGVVKVCKRLQIDYAEAVVGFEFGHR--MAVPVIQGVVIAEEHHDEVM 834
                 8************************************************944..447************99885 PP

>> BHD_1  Rad4 beta-hairpin domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.1   7.7e+03      41      48 ..     558     571 ..     540     572 .. 0.59
   2 !   66.2   0.1   4.7e-22   1.7e-18       1      51 []     623     690 ..     623     690 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.1
       BHD_1  41 k......kepVYrR 48 
                        k pVY R
  CCE31276.1 558 GvrmpmeKTPVYNR 571
                 03344447899998 PP

  == domain 2  score: 66.2 bits;  conditional E-value: 4.7e-22
       BHD_1   1 kepmPenlqdfKnhplYvLerhLkrnEvlhpdakpvgvfkk..................kepVYrRsdV 51 
                 ke++ e+lq++K+++++vLerhLkr+E+ +++akpv++fk+                  +e+V++RsdV
  CCE31276.1 623 KEGE-ETLQYYKDSKEFVLERHLKREEAFKAQAKPVKKFKNkakrskgaagaagggeeeEEDVFLRSDV 690
                 6999.**********************************657889999999999****9*********9 PP

>> BHD_2  Rad4 beta-hairpin domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.8         2   7.1e+03      26      44 ..      88     106 ..       5     114 .. 0.74
   2 ?   -1.3   0.5       1.3   4.5e+03       4      39 ..     206     242 ..     205     278 .. 0.59
   3 ?   -2.0   0.2         2   7.2e+03      19      39 ..     419     439 ..     397     458 .. 0.61
   4 ?   -2.4   0.1       2.8     1e+04      19      40 ..     562     605 ..     545     628 .. 0.54
   5 ?   -2.7   0.0       3.5   1.3e+04      11      28 ..     620     637 ..     615     650 .. 0.70
   6 !    7.1   0.5    0.0029        10      14      50 ..     651     684 ..     640     688 .. 0.73
   7 !   53.7   0.4   8.3e-18     3e-14       1      64 []     694     756 ..     694     756 .. 0.98
   8 ?   -1.7   0.1       1.7   5.9e+03      39      40 ..     857     901 ..     838     947 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2
       BHD_2  26 raktarkkredekkeeeee 44 
                 ++++ +k+++d+++++++ 
  CCE31276.1  88 KRQRVSKASSDDDDNDGDS 106
                 3444444444444333333 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
       BHD_2   4 erWyr.lGReVkpgelPvKrvksraktarkkredekk 39 
                 erW    G +  p  + +Kr   + k  +k  +++ k
  CCE31276.1 206 ERWRLnSGLVTQPPTEAAKRSETKSKNGAKGKKNARK 242
                 6777777777777777777777655444443333333 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2
       BHD_2  19 PvKrvksraktarkkredekk 39 
                 P +++ +r  +a+++ +d+++
  CCE31276.1 419 PKRKLRRRPEQANASLSDAED 439
                 444444455455444444443 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 2.8
       BHD_2  19 PvKrvksraktarkkredekk......................e 40 
                 P+ +++  ++  + kr++e +                      e
  CCE31276.1 562 PMEKTPVYNRNGKVKRYEEFDwfraamsgyrrgsrahpiteidE 605
                 55555555555555555555455555555555555555553322 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 3.5
       BHD_2  11 ReVkpgelPvKrvksrak 28 
                 ++Vk+ge+ + + k ++ 
  CCE31276.1 620 KTVKEGEETLQYYKDSKE 637
                 789999998877776555 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0029
       BHD_2  14 kpgelPvKrvksraktarkkredekkeeeeeeeegev 50 
                 k +  PvK+ k +ak+ ++++  +      eeee++v
  CCE31276.1 651 KAQAKPVKKFKNKAKRSKGAAGAAGG---GEEEEEDV 684
                 55666**********99999776554...44444555 PP

  == domain 7  score: 53.7 bits;  conditional E-value: 8.3e-18
       BHD_2   1 rSaerWyrlGReVkpgelPvKrvksraktarkkredekkeeeeeeeegevpLYgewQTelYvpP 64 
                 +Sae+W+++GR  + ge P+Krv+ ra+t ++kre  ++ e  ++e+  ++LY+ +QT++++pP
  CCE31276.1 694 KSAETWHKQGRAPLAGERPLKRVPYRAATLNRKREILEA-EAATGEKVLQGLYSYEQTDWIIPP 756
                 8***********************************999.9999*******************9 PP

  == domain 8  score: -1.7 bits;  conditional E-value: 1.7
       BHD_2  39 k...........................................e 40 
                 +                                            
  CCE31276.1 857 RgkwrrfimglriverirqdygeidesvsvfghskaigptsaapA 901
                 245555555555555554444444444444444444444444440 PP

>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     2e-06    0.0071      14      80 ..     295     363 ..     283     497 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2e-06
  Transglut_core  14 plekakaiyewvrknveysaprrtpgsrdaeavletgk...GncedfaslfvallRalGipaRvvtgyls 80 
                     +le++ ++ ++++++++ + +r + +++++  +  +     G     a+lf+allR lGi+aR+v  +++
      CCE31276.1 295 SLERLDKLTKAYKEEFTDQ-DRFGERTASLKGFQHCACvceGSRDVGAQLFTALLRGLGIEARMVASLQP 363
                     5566666666666666655.666666666666655333445788888******************98877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 6964.93
//
Query:       CCE31277.1  [L=127]
Description: uncharacterized protein CPUR_05128 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-13   50.2   0.0    2.6e-13   50.0   0.0    1.0  1  Dcc1      Sister chromatid cohesion protein Dcc1


Domain annotation for each model (and alignments):
>> Dcc1  Sister chromatid cohesion protein Dcc1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   1.5e-17   2.6e-13       1     103 [.      19     110 ..      19     121 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 1.5e-17
                 EEEEEXXHHHHHHHTSTTX..SEEEESSSSXEEEEXSSXEEEEEEEEEEEEEEEEEEEXXSSXXXX.....XXSXXEEEEEEEEEEEEE.EEEEE--S- CS
        Dcc1   1 ykLLeldpellkaleeges..lvikgapdeeaVLctedkTyslkqvetSNslLLvteekeeeeekaeeeeeeksaqkkslvvsataseylElkeiaprl 97 
                 y+LLel+p+l + le++    l++ + +d  a+L t d+Ty+l+q++tSN l L+++++ +++             + ++ ++at++e+++l +++   
  CCE31277.1  19 YRLLELPPDLANLLESQAApvLTLES-SDTTAILRTPDRTYTLRQKNTSNALCLLSTRQSPDSA------------EPHVAIVATVHETVDLDPVHEPS 104
                 9*************665553266665.8999***********************9999987766............679***************99766 PP

                 .--TT- CS
        Dcc1  98 dklkel 103
                  +++ l
  CCE31277.1 105 GRVDGL 110
                 666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 906.53
//
Query:       CCE31278.1  [L=1577]
Description: uncharacterized protein CPUR_05129 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-26   91.9   0.2    1.4e-25   90.6   0.0    1.8  2  RhoGEF        RhoGEF domain
  ------ inclusion threshold ------
      0.022   14.5   0.0      0.042   13.6   0.0    1.4  1  DUF3507       Domain of unknown function (DUF3507)
       0.33    9.8   2.2        1.3    7.9   0.8    2.2  2  5_nucleotid   5' nucleotidase family
       0.79   10.1   5.8        2.7    8.4   5.8    1.9  1  SYF2          SYF2 splicing factor
          1    9.4   6.4       0.44   10.6   1.6    2.9  3  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C


Domain annotation for each model (and alignments):
>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0     4e-29   1.4e-25       2     179 ..     253     461 ..     252     464 .. 0.87
   2 ?   -2.9   0.2       1.9   6.8e+03      68      68 ..    1493    1493 ..    1453    1558 .. 0.42

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 4e-29
                 HHHHHHHHHHHHHHHHHHHHHTHCCCHHCT........CCHHHHHHHHC.TTHHHHHHHHHHHHHHHHHHHH........................... CS
      RhoGEF   2 ikElleTErsYvrdLkvlvevylkplsele........vlseeeikiiF.snieeilelhrsflleeLeerl........................... 64 
                 ++El++TE+ Yv +L+ lv  + k ++e++          seee++ +F    ++i++l+ s ++e+L+  +                           
  CCE31278.1 253 LAELVDTEERYVMKLRELVYDVAKDFRESAkarpggslSPSEEELDRLFpRSADQIYQLN-SAFVEQLRRTMddteeealrdmghttsnlssikgpgpg 350
                 57*****************77776666666677899988999*******77899******.99*9*9*99999****9999999999888777666555 PP

                 ..HHHTTSS-S-SHHHHHHHHSTHHH.HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTS CS
      RhoGEF  65 k.eseeqkeaqsigdvflkfadkfkk.YseYcsnypnalkllkelskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpesh 161
                 + +s++ + a +++ +fl++++kf++ Y++Y++  ++   ll++ +++++ f    +++    + ++++++s+Li+PvqRlprY LL+++++ ++p +h
  CCE31278.1 351 SaRSKDASGALTMARLFLEWFPKFTQsYQDYIRASQHFPTLLNSFLDQQSSF---RQRVM---QSGEQTIRSILIEPVQRLPRYSLLIDQIVSSLPITH 443
                 1688999999*************9988*****************76666666...45544...3489******************************** PP

                 HHHHHHHHHHHHHHHHHH CS
      RhoGEF 162 pdyealkkaleaikevas 179
                 p  + + ka + + +++s
  CCE31278.1 444 PALQPMLKARDIVTNICS 461
                 *******99999998876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.9
                  H CS
      RhoGEF   68 e 68  
                  +
  CCE31278.1 1493 N 1493
                  1 PP

>> DUF3507  Domain of unknown function (DUF3507)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.2e-05     0.042      59     123 ..      45     108 ..      28     172 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
     DUF3507  59 sseklsalvldklGvsllesvdlsskSrfypaveNLspkyqksnvrkslAvalLkkYallseskl 123
                 +s++ +  vl   G  ++  + +s +S fy+av+ L  + q ++v + lA  l k Y +  ++ +
  CCE31278.1  45 NSSRAQIHVLSPAGFQSFPRIPISPSSPFYAAVNHLPREVQVDEVYRGLAYGLFK-YFTELPDGV 108
                 677888999999***************************************9998.665544444 PP

>> 5_nucleotid  5' nucleotidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.067   2.4e+02     116     142 ..     750     776 ..     724     798 .. 0.83
   2 ?    7.9   0.8   0.00036       1.3     342     417 ..    1454    1534 ..    1444    1538 .. 0.58

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.067
                  .TEE----TTHHHHHHHHHHHHHHHTT CS
  5_nucleotid 116 krlallntlFslpeayLlaqlvdlfdk 142
                  + ++ll+t F++++a+L a++v++++k
   CCE31278.1 750 RLIQLLSTQFNVSNAHLTASMVSYYTK 776
                  457889*****************9886 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00036
                   HTHHHHHHHHHHHHHHHHHHHHHHHHHH...T.T.....THHHHHHHHHHHHHHHHHHHHHHHHHHCCS-TTT--SSEETTEEB CS
  5_nucleotid  342 ekkekeeleelekleelledelkklkss...eee.....skekleeleedleelkkeirelreelkelfnkqfGslfrtgseks 417 
                   +++  +  ++l++le++++ ++++l+ +   + +     + +++++  + +++l++e+ + +e l e++n+++G ++r+ + k+
   CCE31278.1 1454 TSS--SVAASLKELERKIQLMMQDLRRQqasT-QceldtTLKNMDTKVRAIDQLHREVVAENELLYEKYNGELGRIVRAVKGKT 1534
                   333..444555555555555555555553322.135333334444444466666666666777788899999999999988776 PP

>> SYF2  SYF2 splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.8   0.00076       2.7      19     123 ..    1438    1561 ..    1422    1568 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00076
        SYF2   19 aekwekkkkkk.eknedagfsdyedaayrkYkkqlkelkpdleaYekqkekaleka................savsk.eafyrta....ntlsladh 93  
                  +e+ ++    +  + + ++ s++ +a+ ++ +++++ +  dl + +++ + +l+++                + v + e +y++      ++  a +
  CCE31278.1 1438 VERAQQ---ARaPSVQATETSSSVAASLKELERKIQLMMQDLRRQQASTQCELDTTlknmdtkvraidqlhrEVVAEnELLYEKYngelGRIVRAVK 1531
                  333333...3323456666789999999**************9999999999998799*********999984444457888877332323333366 PP

        SYF2   94 kpseeavdrlveklekqeekrkkfsrrrke 123 
                    ++++ d+lvekl++q e++ ++++++++
  CCE31278.1 1532 GKTRDDKDELVEKLKEQTEETARMKKENAR 1561
                  7899*****************999998875 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.84     3e+03     100     113 ..     147     160 ..     137     169 .. 0.58
   2 ?   -2.2   0.0       1.1     4e+03      63      90 ..     280     326 ..     243     343 .. 0.54
   3 ?   10.6   1.6   0.00012      0.44      27      82 ..    1449    1504 ..    1418    1516 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.84
  Baculo_PEP_C 100 svtNinstLnnllq 113
                   +++N+++tL+  lq
    CCE31278.1 147 NIANVIATLQDALQ 160
                   34444444444333 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
  Baculo_PEP_C  63 t...............rldtlltnLtdalnalq....dtlrneLtnl 90 
                   +               +ld l+ +  d++ +l+    ++lr  ++ +
    CCE31278.1 280 EsakarpggslspseeELDRLFPRSADQIYQLNsafvEQLRRTMDDT 326
                   33334444444444446666666666777777755555555555554 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00012
  Baculo_PEP_C   27 lqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdt 82  
                     q +++++ +a+ l+++e++++ + +dl++  a+ + +ldt+l+n+++++ a+ + 
    CCE31278.1 1449 VQATETSSSVAASLKELERKIQLMMQDLRRQQASTQCELDTTLKNMDTKVRAIDQL 1504
                    5889999999********************9999999************9999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1413  (0.0788109); expected 358.6 (0.02)
Passed bias filter:                      664  (0.037035); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.50
# Mc/sec: 9475.24
//
Query:       CCE31279.1  [L=288]
Description: probable protein MUS-26, involved in DNA repair [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-07   29.0   0.0    1.3e-06   28.2   0.0    1.5  1  HORMA     HORMA domain


Domain annotation for each model (and alignments):
>> HORMA  HORMA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   7.3e-11   1.3e-06       6     101 ..      29     119 ..      25     229 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 7.3e-11
       HORMA   6 kellaasissilylRglfpedaFedrklsglklkiLlrgsseeadr.lldwLekGvfdaLekkyLealiltIykdkdepenvlEsYtFsfkytksgg 101
                  ++l+++++sily R l+p ++F   +   ++l +  +++++++++ + d +     ++++++  +++ l++++ +    +vlE++ F+++ + + +
  CCE31279.1  29 SNFLTVAVHSILYHRALYPPESFLVARA--YNLPVR-QSRHPGVCTwVRDAVA-ATAQQIRQGTARQICLAVHEPRRL--DVLERWIFDVQSFPDSS 119
                 689********************99998..788876.4555999997888885.599***************855554..6*********9877554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2183.39
//
Query:       CCE31280.1  [L=419]
Description: related to 2,4-dienoyl-CoA reductase precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-13   51.2   0.0    2.1e-13   50.4   0.0    1.4  1  ADH_zinc_N  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.032   14.1   0.0    1.6  1  ADH_N       Alcohol dehydrogenase GroES-like domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   2.3e-17   2.1e-13       1     120 [.     225     355 ..     225     364 .. 0.83

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 2.3e-17
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT.......TESEEEET....TTCHHHHHHHHHT..TTSSEEEEEESSCSHHHHHHHHHCEEEEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakkl.......Gadeviny....keadlverikelt..ggegvdvvfecvGsgatleaalkllkpgGrlv 86 
                 gvG aa+q+ k +G + i v ++++  e  + l       Ga++v+++    ++ +++++++e+t  g e++ ++++cvG g++ +a  ++l +g  +v
  CCE31280.1 225 GVGRAAIQFGKLWGHRSINVIRDRDTSEETEALkkelldlGANVVVTEsqflSR-QWNDQLAEITrgGREQIGLALNCVG-GKSATALARSLGEGASMV 321
                 8**************8777777777553333333333555********777666.7*********655789999******.****************** PP

                 ECSC.TSSEEEEEHHHHHHTT-EEEEE-SSCHHHH CS
  ADH_zinc_N  87 vvGg.gkgeeefdlrnlllkeksilGsllgslree 120
                  +Gg + ++  ++l+ l++k+++++G++l++ +++
  CCE31280.1 322 SYGGmSRQPVALPLGLLIFKDIRFVGFWLSK-WNQ 355
                 ****7777777******************99.554 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.5e-06     0.032       3      62 ..      78     146 ..      76     163 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.5e-06
                 EEEEEEEEEEE-HHHHHHHTTS.........TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE- CS
       ADH_N   3 evlikvkaagiCgsDlhilkgg.........kelevklplilGHEivGeveevgpevkklkvGdrVvve 62 
                  vl+++ aa i+  D+ +++g+            + ++  ++G E v ev+++g+  ++lk+Gd V+  
  CCE31280.1  78 SVLVRTLAAPINPADINTIQGTygtkqamslLIGTSEPSAVPGNEGVFEVVSTGDPSSSLKKGDWVIPA 146
                 79*******************98888777765566666699************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3063.54
//
Query:       CCE31281.1  [L=215]
Description: uncharacterized protein CPUR_05132 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1606.04
//
Query:       CCE31282.1  [L=352]
Description: uncharacterized protein CPUR_05133 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-10   40.4   0.0      5e-10   39.5   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0044   16.9   0.0      0.013   15.4   0.0    1.8  2  RsgA_GTPase  RsgA GTPase
     0.0067   16.0   0.1      0.018   14.5   0.1    1.8  1  FeoB_N       Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.026   14.9   0.1      0.051   14.0   0.1    1.8  1  AAA_16       AAA ATPase domain
       0.14   11.6   0.0       0.24   10.8   0.0    1.3  1  TniB         Bacterial TniB protein


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.4e-13     5e-10       2      75 ..     130     223 ..     129     273 .. 0.62

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1.4e-13
                 EEEEESTTSSHHHHHHHHHT........S..TEEESSSTTSSSSE.EEEEEE...ETTEE.......EEEEECGGCSS..HHHHHHHHHHHHHHHHC CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg........e..kaivsdkpgtTrdi.negrvk...lkgke.......ielvDtpGlie..gaseekglgkaflalee 75 
                 +++vG+pNvGKS+L+n+l +        +  k++++d++g+Tr++    rv        e       +   DtpG+++  +++ e +++ a+ + ++
  CCE31282.1 130 AMVVGMPNVGKSSLVNQLREqgtpsllmKgfKSKTGDMAGVTRHVgSSVRVIlsaP---EkrgvahgVFCRDTPGVFQpyTEDGETMIKLALINGIK 223
                 689***************96666666653469*************77777774441...234444459999****8643312222233333333222 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.6e-06     0.013      90     128 ..     118     158 ..      57     207 .. 0.54
   2 ?   -3.5   0.0       2.3   8.3e+03      58      99 ..     226     267 ..     218     271 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.6e-06
                  HHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT......-----S CS
  RsgA_GTPase  90 leelkellkdktsvlvGqSGvGKStLinallpe......lelktg 128
                  +++ ++ l++  +++vG   vGKS+L+n+l+++      +    +
   CCE31282.1 118 VAKEQDSLTGLQAMVVGMPNVGKSSLVNQLREQgtpsllM----K 158
                  233345566667899***************9974444431....3 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.3
                  G--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  58 lleeeeeleelkeelealgyevllvsaktkegleelkellkd 99 
                  l++++  ++ l  +l++l+ +v++  ++ +++++e+ + l++
   CCE31282.1 226 LISNMILADYLLYRLNQLDPAVYAHYSQPTNSIDEILTTLAK 267
                  555555455556667777777777777777777777777665 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   5.1e-06     0.018       3      22 ..     130     149 ..     128     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.1e-06
                 EEEEESTTSSHHHHHHHHHT CS
      FeoB_N   3 valvGnpnvGkttlfnaltg 22 
                  ++vG pnvGk++l+n+l +
  CCE31282.1 130 AMVVGMPNVGKSSLVNQLRE 149
                 679**************964 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.4e-05     0.051      10      51 ..     113     154 ..     107     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
      AAA_16  10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 ++L+++ +   s ++   +++G++ vGKsslv++l+++ + +
  CCE31282.1 113 ARLREVAKEQDSLTGLQAMVVGMPNVGKSSLVNQLREQGTPS 154
                 4555555544444448889*****************976555 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.7e-05      0.24      18      58 ..     110     150 ..     106     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.7e-05
        TniB  18 eilerLeeLleypkrkrmpnlllvGdsnnGKtmivekFarl 58 
                 ++l+rL+e+ +  ++    ++++vG +n+GK+++v++ +++
  CCE31282.1 110 KLLARLREVAKEQDSLTGLQAMVVGMPNVGKSSLVNQLREQ 150
                 6799999999999999999*****************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2528.70
//
Query:       CCE31283.1  [L=562]
Description: uncharacterized protein CPUR_05134 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-09   37.6   2.1    3.7e-09   36.3   2.1    1.6  1  PHD         PHD-finger
     0.0077   15.8   2.7      0.012   15.1   2.7    1.3  1  PHD_2       PHD-finger
  ------ inclusion threshold ------
      0.054   13.7   2.4       0.12   12.7   2.4    1.5  1  CEBP_ZZ     Cytoplasmic polyadenylation element-binding prote
      0.096   12.7   0.2      0.096   12.7   0.2    2.4  2  UIM         Ubiquitin interaction motif
        0.1   12.6   0.8       0.24   11.4   0.8    1.6  1  zf-CW       CW-type Zinc Finger
       0.11   12.5   0.1          1    9.5   0.0    2.4  2  NPP         Pro-opiomelanocortin, N-terminal region


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   2.1   1.2e-12   3.7e-09      11      51 ..     136     174 ..     131     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.2e-12
                 TTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD  11 eeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                   +++vqCd Ck w+H +C+++     e + +e++Ce+C++
  CCE31283.1 136 VTGFFVQCDVCKVWQHGACVGIFSA--ESSPDEYFCEQCRK 174
                 5789******************977..444458******86 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.7   4.1e-06     0.012       3      36 .]     139     173 ..     137     173 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.1e-06
       PHD_2   3 pllsCdkCsvaVHasCYGv.skesdgeeWlCrrCe 36 
                  +++Cd C+v  H +C G+ s es+ +e+ C+ C+
  CCE31283.1 139 FFVQCDVCKVWQHGACVGIfSAESSPDEYFCEQCR 173
                 579***************8355666677******6 PP

>> CEBP_ZZ  Cytoplasmic polyadenylation element-binding protein ZZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.4   3.9e-05      0.12      13      52 ..     142     183 ..     137     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.9e-05
     CEBP_ZZ  13 eCeiCekakar..gpyfCrdlaCfkYyCetCwqrrHsaeske 52 
                 +C++C+  ++     +f ++++  +Y+Ce+C +  H++++ +
  CCE31283.1 142 QCDVCKVWQHGacVGIFSAESSPDEYFCEQCRKDLHKMHAAA 183
                 699999988553345799***************999776543 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.4   2.5         6   1.8e+04       1       5 [.      97     101 ..      97     101 .. 0.84
   2 ?   12.7   0.2   3.2e-05     0.096       2      16 ..     241     255 ..     241     255 .. 0.89

  Alignments for each domain:
  == domain 1  score: -5.4 bits;  conditional E-value: 6
         UIM   1 dEded 5  
                 +Eded
  CCE31283.1  97 QEDED 101
                 79998 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.2e-05
         UIM   2 EdedLqrAlalSlqE 16 
                 +de+L+rA++ S  E
  CCE31283.1 241 DDEQLRRAIEASKGE 255
                 7***********765 PP

>> zf-CW  CW-type Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   8.1e-05      0.24       2      35 ..     140     174 ..     139     183 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.1e-05
       zf-CW   2 wVqCdkClKWRr.lptev.dkselipekWvCsmnps 35 
                  VqCd C+ W      ++   ++  p++++C++ ++
  CCE31283.1 140 FVQCDVCKVWQHgACVGIfSAESS-PDEYFCEQCRK 174
                 69********99655666455555.99*****9874 PP

>> NPP  Pro-opiomelanocortin, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.44   1.3e+03       3      28 ..     149     176 ..     147     178 .. 0.61
   2 ?    9.5   0.0   0.00034         1      16      38 ..     486     508 ..     484     514 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.44
         NPP   3 wehssCqdlss.Easlle.CikaCrsdl 28 
                 w+h+ C  + s E+s  e + ++Cr+dl
  CCE31283.1 149 WQHGACVGIFSaESSPDEyFCEQCRKDL 176
                 7777777654414444334568899998 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00034
         NPP  16 slleCikaCrsdlsaEtPvfPGn 38 
                  ++e+i++ + dl aE+P+  G+
  CCE31283.1 486 AIMEFISRTQVDLAAEAPLSQGS 508
                 69****************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1497  (0.083496); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.50
# Mc/sec: 3379.22
//
Query:       CCE31284.1  [L=547]
Description: uncharacterized protein CPUR_05135 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.021   15.0   1.4       0.07   13.3   1.4    1.9  1  FXR_C1       Fragile X-related 1 protein C-terminal region 2
        4.1    7.9   9.5       0.55   10.7   4.9    2.0  2  Prothymosin  Prothymosin/parathymosin family


Domain annotation for each model (and alignments):
>> FXR_C1  Fragile X-related 1 protein C-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.4   7.9e-06      0.07      20      50 ..     356     385 ..     343     393 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.9e-06
      FXR_C1  20 lldtnetdqtaDtdasesqlsanRRRRsRRR 50 
                 l+ t++t + ++tdas+++++ +RRR +RRR
  CCE31284.1 356 LIPTANTSNNTNTDASNATHAQSRRR-ARRR 385
                 5667799999*******998877765.5554 PP

>> Prothymosin  Prothymosin/parathymosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.6   1.4e+04      35      44 ..     365     374 ..     358     398 .. 0.52
   2 ?   10.7   4.9   6.2e-05      0.55      15     108 ..     439     547 .]     434     547 .] 0.59

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.6
  Prothymosin  35 ngnaneenge 44 
                  n n +  n  
   CCE31284.1 365 NTNTDASNAT 374
                  2222222222 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 6.2e-05
  Prothymosin  15 dLKeKKevveeaekgk..........dapangna.ne.engeeeadeeveeeeeeeeeee....eeeeeeeeegeeeegeeeeeeaegatvkraAede 96 
                  +LK++++  eeae ++          + ++ g + n+   + ++ de+v ++  e++ ++    + +++ ++ +ee ++e++++ +   +++r+   e
   CCE31284.1 439 ELKDRRQRQEEAERKRllekakaksrKSKKSGRGlNRgVSSGQNPDEHVPADLTEDQ-DTlplhHGHSQSTQSDEEYNEEPDDNGNYRLPGRRKPPGE 535
                  566654444444444444444333344444454443312333444444433333333.3357866666667777777888888889999********* PP

  Prothymosin  97 edddvetkKqkt 108
                  e+ +ve ++ kt
   CCE31284.1 536 ESGNVERNRAKT 547
                  **9*****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3920.16
//
Query:       CCE31285.1  [L=1402]
Description: uncharacterized protein CPUR_05136 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
          1   10.1   5.4       0.28   12.0   1.0    2.4  2  PSK_trans_fac  Rv0623-like transcription factor


Domain annotation for each model (and alignments):
>> PSK_trans_fac  Rv0623-like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.0   1.6e-05      0.28      15      78 ..     569     632 ..     565     635 .. 0.91
   2 ?   -4.2   0.2         1   1.8e+04      27      41 ..     962     976 ..     955     986 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHHHTS--SS-SSTTSTTTXXX CS
  PSK_trans_fac  15 reLarltgeskteAvrrAleerlerlrreraepllerllallrraaakaekedrspdekllyDe 78 
                     ++a++ g+s  + v +Al++ l+ +++++ ++ +e l+a+l +++ k++++++++  ++ +D 
     CCE31285.1 569 STVAAAVGQSTDAMVGAALSQDLASRNAANISKYREPLAAVLPSVEKKEDQRAMEESSDDDFDT 632
                    579**********************9999999***************99999999999999985 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1
                    XXXXXXXXXXXXXXX CS
  PSK_trans_fac  27 eAvrrAleerlerlr 41 
                    +A+r+ +++r +  +
     CCE31285.1 962 RAIRTSMRNRAASND 976
                    466666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1056  (0.058899); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.27s 00:00:01.18 Elapsed: 00:00:00.44
# Mc/sec: 9646.41
//
Query:       CCE31286.1  [L=483]
Description: uncharacterized protein CPUR_05137 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0001   22.1   2.0    0.00025   20.8   2.0    1.7  1  DUF1752   Fungal protein of unknown function (DUF1752)


Domain annotation for each model (and alignments):
>> DUF1752  Fungal protein of unknown function (DUF1752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   2.0   1.4e-08   0.00025       2      23 ..      39      62 ..      39      67 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.4e-08
     DUF1752  2 Wkyytkkkkdl..pngeRLENlSW 23
                W +yt++ k+l  p+++RLEN++W
  CCE31286.1 39 WHVYTTTNKKLkdPTARRLENFWW 62
                ************************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3957.69
//
Query:       CCE31287.1  [L=359]
Description: related to D-arabinitol 2-dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-55  188.4   0.1    2.2e-55  187.8   0.1    1.2  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    3.5e-38  131.0   0.3      5e-38  130.5   0.3    1.2  1  adh_short      short chain dehydrogenase
    2.7e-13   50.2   0.1    4.1e-13   49.6   0.1    1.2  1  KR             KR domain
     0.0024   17.3   0.0      0.032   13.6   0.0    2.0  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
      0.033   14.1   0.8       0.17   11.8   0.1    2.3  3  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.8   0.1     6e-59   2.2e-55       1     234 []     108     357 ..     108     357 .. 0.92

  Alignments for each domain:
  == domain 1  score: 187.8 bits;  conditional E-value: 6e-59
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTT.....SE.E.....EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelg.....ae.v.....lecDVtdeeqvealveevvekfgklDilvnnagiapklkg 85 
                   G a+g+G  +A+ +   Ga+v+l+d+nee+ +k+++ l +++      ae +       +DV+d+++vea++++vv+++gk+D lv +ag++++   
    CCE31287.1 108 GGARGLGLVMAQGMVFSGADVALVDMNEEEaQKQTKLLMDAFTrenpnAErIpnvtaHYADVADPDSVEACIADVVQQHGKIDHLVTSAGFTEN--F 202
                   669***************************99999888887764433322325557789***********************************..9 PP

                   -GGGH-HHHHHHHHHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSB.STTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCT CS
  adh_short_C2  86 pfletsreefdraldvnlyslfllakaalp.lmkeg..gsivnlssvgaerv.vpnyn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTl 177
                   ++++ + + +++  +vn+ +++l+a  +++ lm+++  gs+v + s+++ +v vp+ +  y+aaKa++ +l+ +lAve+++ giRvN++spg++ T 
    CCE31287.1 203 EAVKYPIDRMRKLWAVNVDGTYLFATSVARhLMARNapGSMVMIGSMSGAIVnVPQPQaPYNAAKAGIRHLAASLAVEWASAGIRVNCISPGYMLTA 299
                   99***************************99999989*******9996666659999989************************************* PP

                   GGGGSTT.HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 178 aasgikg.fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   ++++i + +++l++++ + +p g++g+p++    + fL+sd++ y+tG+++ vDgG+t
    CCE31287.1 300 LTEKILDeNPDLKQKWTSLIPQGKMGQPQDLMGPVTFLLSDASGYVTGADIRVDGGYT 357
                   *9999885889**********************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.3   1.4e-41     5e-38       4     192 ..     105     306 ..     102     309 .. 0.89

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 1.4e-41
                 EEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.......TSE....EEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--S CS
   adh_short   4 lvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.......gak....alaiqvDvtdreevealvekavkklgkldvLvnNAGitgsg 91 
                 +vtG+++G+G+ +a+ ++ +Ga+v++vd +ee++++  k l ++       + +    ++a  +Dv+d ++vea ++++v+++gk+d Lv+ AG t++ 
  CCE31287.1 105 VVTGGARGLGLVMAQGMVFSGADVALVDMNEEEAQKQTKLLMDAftrenpnA-EripnVTAHYADVADPDSVEACIADVVQQHGKIDHLVTSAGFTENF 202
                 8*********************************998887766554333321.1455588999************************************ PP

                 SGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGG..TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short  92 pfselseeewervievNltgvflltravlpaml.kqssGrIvnvsSvag..kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 ++ ++  ++++++ +vN+ g++l + +v+++++ ++  G+ v ++S+ g   +    +a+Y A+Ka++++l+ sla e+a+ girvn++ PG++ T+++
  CCE31287.1 203 EAVKYPIDRMRKLWAVNVDGTYLFATSVARHLMaRNAPGSMVMIGSMSGaiVNVPQPQAPYNAAKAGIRHLAASLAVEWASAGIRVNCISPGYMLTALT 301
                 *******************************7769999***********74333445899*************************************** PP

                 HHHCT CS
   adh_short 188 kelre 192
                 +++ +
  CCE31287.1 302 EKILD 306
                 99866 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.1   1.1e-16   4.1e-13       4     162 ..     105     276 ..     103     295 .. 0.81

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.1e-16
                 EEETTTSHHHHHHHHHHHHHHS-.EEEEE-SS..--HHHHHHHHHHHHTT-......EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-------- CS
          KR   4 litGGlGgLGlelarwlaekgar.hlvllsRsaaadedskaliaelealga......evevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdk 95 
                 ++tGG+ gLGl++a+ ++ +ga   lv +  + +a+++ k l++++++ +       +v++  aDv+d+d+vea+++++ +++++i   + +Ag++++ 
  CCE31287.1 105 VVTGGARGLGLVMAQGMVFSGADvALVDMNEE-EAQKQTKLLMDAFTRENPnaeripNVTAHYADVADPDSVEACIADVVQQHGKIDHLVTSAGFTENF 202
                 79*******************76145555555.5556656566666555334466789***************************************** PP

                 -TTT--HHHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--..TT-HHHHHHHHHHHHHHHH CS
          KR  96 lleemtaedleqvlapKvkGawnLhelled.....esldffvlfSSiagllgs..agqanYaaaNaflDalaey 162
                    +   ++++++ a  v+G+    + +++     +    +v++ S++g + +  + qa Y aa a +  la++
  CCE31287.1 203 EAVKYPIDRMRKLWAVNVDGTYLFATSVARhlmarNAPGSMVMIGSMSGAIVNvpQPQAPYNAAKAGIRHLAAS 276
                 *********************9987766655555578899*********88772256899****9987777765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   8.8e-06     0.032       2     198 ..     106     305 ..     105     330 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.8e-06
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-T..THHHHHC..TTT...TTGCCEEEEE--TT-HHHHHHHHHHH..T-SEEEE-...-S-... CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfn..tgriehl..akdpkeeleenlklhkgDltDssslerllaev..qpdevynL...AAq... 85 
                    +TG+a   G  +a+ ++  g +v  ++ ++++ +  t+ +     +++p++e  +n++ h++D+ D +s+e  +a+v  q  ++ +L   A+    
     CCE31287.1 106 VTGGARGLGLVMAQGMVFSGADVALVDMNEEEAQkqTKLLMDAftRENPNAERIPNVTAHYADVADPDSVEACIADVvqQHGKIDHLvtsAGFten 201
                    89999999999************99988776654114433333114567777778*****************999987755566666222443222 PP

                    .--HHHHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE CS
  GDP_Man_Dehyd  86 .shVdvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngil 180
                      +V++ ++   + + vnv Gt+     + ++ +++++     ++  + G+++ + +   +  +P+ PY aaK+   +++ +       +a+ gi 
     CCE31287.1 202 fEAVKYPIDRMRKLWAVNVDGTYLFATSVARHLMARNA----PGSMVMIGSMSGAIV---NVPQPQAPYNAAKAGIRHLAASLAV---EWASAGIR 287
                    24577777788888889999998887766655444332....233334444433332...2335888888888888888876654...46677777 PP

                    -EEESTTS-TTSCCCHHH CS
  GDP_Man_Dehyd 181 fnhesprrgetfvtrkit 198
                     n  sp    t  t+ki 
     CCE31287.1 288 VNCISPGYMLTALTEKIL 305
                    777777777777777776 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.3   4.8e+03     104     120 ..      26      42 ..      20      53 .. 0.76
   2 ?   11.8   0.1   4.7e-05      0.17       2      50 ..     103     153 ..     102     186 .. 0.73
   3 ?   -0.3   0.0      0.25   8.8e+02      11      67 ..     274     334 ..     268     351 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.3
                 S-TTSEEEE--SSS-HH CS
     3HCDH_N 104 akpdailasnTSslsis 120
                 +++ a+las++Ss s s
  CCE31287.1  26 LSSPAFLASSSSSSSSS 42 
                 56778999999987765 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.7e-05
                 EEEE--SC..CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCT CS
     3HCDH_N   2 vaviGaGt..mGagiaavfasagleVvlvdiseealekalekieksleklv 50 
                 v+v+  G   +G  +a+ ++ +g +V lvd++ee ++k ++ + + + +  
  CCE31287.1 103 VGVVTGGArgLGLVMAQGMVFSGADVALVDMNEEEAQKQTKLLMDAFTREN 153
                 677766652266668999**********************99998777654 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.25
                 HHHHHHHHHHTT-EEEEE-S......-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCE CS
     3HCDH_N  11 GagiaavfasagleVvlvdi......seealekalekieksleklvekgklkeeeveaalari 67 
                  a++a   asag++V+ +         +e++ + +  +++++ +l+ +gk+   + ++++  +
  CCE31287.1 274 AASLAVEWASAGIRVNCISPgymltaLTEKILDENPDLKQKWTSLIPQGKMG--QPQDLMGPV 334
                 5778888999999999888766655534444444555666777777777776..555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3037.26
//
Query:       CCE31288.1  [L=430]
Description: probable isovaleryl-CoA dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-42  144.9   1.2    2.1e-42  144.9   1.2    2.1  2  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    1.3e-30  106.4   0.3    2.5e-30  105.4   0.3    1.5  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    8.6e-26   90.0   0.1    2.2e-25   88.7   0.1    1.7  2  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    6.1e-15   55.7   0.3    6.1e-15   55.7   0.3    2.0  2  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
     0.0057   16.3   0.1      0.014   15.0   0.1    1.7  1  HpaB_N         4-hydroxyphenylacetate 3-hydroxylase N termina


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.0      0.32   1.1e+03      60     116 ..      98     152 ..      89     189 .. 0.64
   2 !  144.9   1.2   5.8e-46   2.1e-42       1     148 [.     274     422 ..     274     423 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.32
                    HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTS CS
  Acyl-CoA_dh_1  60 maaeleaarllvyraaealdagkpdraeasmaKlfaselaqevadlamqllGgaGyl 116
                    + +++ea  l+   aa+a+  ++ +ra as+  l ++ + q ++++ +ql+G+a+  
     CCE31288.1  98 VTVDAEAGGLAMGYAAHAIVMEELSRASASVG-LSYAAHSQLCINQ-LQLHGTAAQK 152
                    56778888888888888888888886666665.5555566666666.7999988874 PP

  == domain 2  score: 144.9 bits;  conditional E-value: 5.8e-46
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------.HHHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd.raeasmaKlfa 95 
                    +kG+rv m++l+ eRl++ a+ lg+++++l+ +l y+++r++fg p++ +qlv+ +la+m+++l+a+r+++y++a+++d+++   + +++ a l+a
     CCE31288.1 274 DKGVRVLMHGLDLERLVLSAGPLGIMQACLDVTLPYVHQRRQFGVPIAHNQLVQGRLADMHTKLQASRAYTYATARQVDEQGVVrTEDCAGAILYA 369
                    58*********************************************************************************96666677***** PP

                    HHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHH CS
  Acyl-CoA_dh_1  96 selaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarr 148
                    +e a+e+a +++qllGg+Gy ee+p +rl+rda++++ig+Gtsei r++i+r+
     CCE31288.1 370 AERATECALDCIQLLGGMGYVEEMPASRLLRDAKLYEIGAGTSEIRRMVIGRA 422
                    **************************************************997 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.3     7e-34   2.5e-30       1     112 [.      50     162 ..      50     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 7e-34
                    THHHHHHHHHHHHHHHHHT.HHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHH CS
  Acyl-CoA_dh_N   1 teeqealrdtvrefaeeel.aphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailr 95 
                    ++e ++lr++v++fa++e+ + +aa++d+++ fp+++w+kl+ +Gllg+tv  e gG+ ++y ++aiv+eel+ra+a+++l++++hs+l+++ +  
     CCE31288.1  50 SDELQELRERVQDFARREIpETVAAQADKSNSFPEDMWEKLGSAGLLGVTVDAEAGGLAMGYAAHAIVMEELSRASASVGLSYAAHSQLCINQLQL 145
                    6899***************445777888888***************************************************************** PP

                    HS-HHHHHHHHHHHHTT CS
  Acyl-CoA_dh_N  96 fGteeqkrryLpklasg 112
                    +Gt++qk++ Lp+l++g
     CCE31288.1 146 HGTAAQKAQHLPDLIAG 162
                    **************998 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.9   1.4e+04      69      86 ..      77      94 ..      71      96 .. 0.71
   2 !   88.7   0.1   6.2e-29   2.2e-25       1      97 []     167     262 ..     167     262 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.9
                   .GGGEEE-----BSS-TT CS
  Acyl-CoA_dh_M 69 dapgvsvrrieeklGlrg 86
                   d+++  +++++eklG  g
     CCE31288.1 77 DKSNSFPEDMWEKLGSAG 94
                   455556699999999766 PP

  == domain 2  score: 88.7 bits;  conditional E-value: 6.2e-29
                    EEE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEETS---.----EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlartekpd.rarglslflvprdapgvsvrrieeklGlrglptgelvfe 95 
                    a+a++E +aGsdv s++t +a+r  g++vl+G+K witn+++a+l++++a+ ++p+ ++rg++ flv++ ++g++ +r+ +k+G+rg ptgelv+e
     CCE31288.1 167 ALAMSEAGAGSDVVSMRT-TATRVSGGFVLRGSKLWITNGPEADLVVLYAK-TDPAgGSRGITAFLVDTTTEGFRCSRKLDKMGMRGSPTGELVLE 260
                    79****************.55555559************************.455568******************9999**************** PP

                    .. CS
  Acyl-CoA_dh_M  96 dv 97 
                    dv
     CCE31288.1 261 DV 262
                    97 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.3      0.77   2.8e+03      53      53 ..     112     112 ..      62     167 .. 0.53
   2 !   55.7   0.3   1.7e-18   6.1e-15       2     126 ..     290     405 ..     289     413 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.77
                    H CS
  Acyl-CoA_dh_2  53 A 53 
                    A
     CCE31288.1 112 A 112
                    1 PP

  == domain 2  score: 55.7 bits;  conditional E-value: 1.7e-18
                    HHHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   2 giaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaa 97 
                    +++a  lG+ +a+l+ ++ ++++r +  +g+++a ++ +q +la++ ++l+A ra ++++a++    ++++  v    + + + a ++a+e+a+++
     CCE31288.1 290 VLSAGPLGIMQACLDVTLPYVHQRRQ--FGVPIAHNQLVQGRLADMHTKLQASRAYTYATARQ----VDEQGVV---RTEDCAGAILYAAERATEC 376
                    677888********************..***********************************....6666665...4556667789********* PP

                    HHHHHHHCGGGGGBTT-HHHHHHHHHHHH CS
  Acyl-CoA_dh_2  98 vdalfeaaGgsalrkesplqRlwRDahaa 126
                    + +++++ Gg+++ +e p  Rl+RDa+  
     CCE31288.1 377 ALDCIQLLGGMGYVEEMPASRLLRDAKLY 405
                    **************************975 PP

>> HpaB_N  4-hydroxyphenylacetate 3-hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1     4e-06     0.014     175     271 ..     189     270 ..      92     270 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4e-06
                 -SSEEEEEEEEEEEE-.--SSEEEE---SS-..TTSGGG-EEEEEETT-TTEEEEE-------S..-TTT-TTTTT----EEEEEEEEEEEEGGGEE CS
      HpaB_N 175 tddGivVrGakvlaTgaaladeilvlptramlkeedkdyavafavpvdapGlklicresfedkleesefdyplssrfdendalvvfDdVfVPwerVf 271
                  + G v rG k+ +T+++ ad ++++    +  ++ ++   af v + ++G +  c ++ ++ +       ++    +  +  +v++dVfVP ++V+
  CCE31288.1 189 VSGGFVLRGSKLWITNGPEADLVVLYAKTDP--AGGSRGITAFLVDTTTEGFR--CSRKLDK-M-------GMR---GSPTGELVLEDVFVPDDQVL 270
                 3469*****************9988888666..789999************76..6777666.2.......222...4566789**********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.34
# Mc/sec: 3747.47
//
Query:       CCE31289.1  [L=610]
Description: probable methylcrotonyl-CoA carboxylase beta chain, mitochondrial precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.8e-127  426.0   0.0   2.4e-127  425.6   0.0    1.1  1  Carboxyl_trans  Carboxyl transferase domain


Domain annotation for each model (and alignments):
>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.6   0.0  1.3e-131  2.4e-127       2     481 ..      99     593 ..      98     607 .. 0.90

  Alignments for each domain:
  == domain 1  score: 425.6 bits;  conditional E-value: 1.3e-131
                     SCTTCEEEEEEEEHTTSGGGE.BEHHHHHHHHHHHHHHHHHT..EEEEEEEESBETTEEHHHHTTEEEEESSTTSGGGCEE......ECHHHHHH CS
  Carboxyl_trans   2 ehprGkltareridllldpgs.FgeledlffhrvtelgrkkklprdgvvtgsGaviGravevvaqdktvlggslgpakgek......llkaqeea 89 
                     + +r+k++ reri  l+dpgs F+el+ l+ h+ + ++   ++p+ g++tg+G v+G+++++va+d+tv+gg++  ++ge+      ++  +   
      CCE31289.1  99 HLARNKMLPRERIAALIDPGStFLELSPLAGHELYPEA---HVPAGGIITGVGVVEGVRCVIVANDSTVKGGDVLSHYGEEassgagYCGRESAS 190
                     6799*******************************999...68**************************************87776644444444 PP

                     HHH.................TEEEEEEEEE-ESSS.GHHSSHHHHHHHHHHHHHHHHHHH.CS-EEEEESSEEETHHHHHHHHTSEEEEETTEEE CS
  Carboxyl_trans  90 ika.................gepligindsgGaeg.riqegveslrgsGkifgenskasg.eIpqislvtgrcaGggaYlpalgdrvimveetsk 165
                     +++                  + +i+++dsgGa++ ++++++++++++G+if++++++s  +Ipqi++v+g+c++ggaY+pa++d+ i v+ +++
      CCE31289.1 191 VSSllfsnvpfssdvtasslSVACIYLVDSGGANLpHQADVFPDRDHFGRIFYNQARMSAqGIPQIAVVMGPCTAGGAYVPAMSDESIIVARQGH 285
                     44489999*************************777***********************99********************************** PP

                     EESSTHHHHHHHHSSCC-SSCHHHHSHHHHTTTTSSSEEESSHHHHHHHHHHHHTTS.......-SSTTSGGSS----ECSSGSSSH..HCS-CT CS
  Carboxyl_trans 166 ifltGpdvikkvlgreevtseelgGatqhmtksGvahltaeddeealelirkllsyl.......PkkasnnresaPivetadepdrdlieivPdn 253
                     ifl+Gp+++k+++g e+v++e+lgG+++h + sGv++++a dd +a++l r+ +s l       P + s++ +s+P +e+  +p++ l  i  +n
      CCE31289.1 286 IFLAGPPLVKAATG-EQVSAEDLGGGEMHSSVSGVTDYLAVDDAHAITLARRSISNLnwpsscpPSSSSSSSSSSPPLEPIHDPEQ-LLGIASPN 378
                     **************.************************************99999833222222223333345555555555555.57999999 PP

                     TTS---HHHHHHCEECTTC-EEESTTSSTTEEEEEEEETTEEEEEEEE--SEEETTEE-HHHHHHHHHHHHHHHHTT--EEEEE-BSEE--SHHH CS
  Carboxyl_trans 254 akkpyDvreviarlvdegeFlEikegyAktvVvGfArlgGipvGvvAnetrveaGqvlfidsavKaarfirlcdaenlPlviladvrGflvGqrq 348
                      ++p  +reviar+vd +eF+E+k ++++t+V+GfA ++G  +G++An      G + f+ sa+K a+fi+lc+++ +Pl++l+++ Gf+vG++ 
      CCE31289.1 379 LRQPIPIREVIARIVDGSEFSEFKHDFGTTLVTGFASIYGHKIGIIAND-----G-IFFSASALKGAHFIQLCSQRGIPLIFLQNISGFMVGSAT 467
                     *************************************************.....8.*************************************** PP

                     HHTTHHHHHHHHHHHHHT--S-EEEEE-TEEEHHHHHTTTGGGSTTTTEEETTT-EEESS-HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Carboxyl_trans 349 eyggilkhGaklvdalaeakvPkitvilrkayGGayvvmdskingadlvaawptariaVlgpegaveilfrkekaaaemerkdlaaerkkklkey 443
                     e +gi+khGaklv+a+a+a+vPk+tv+++ +yG+++++m+++++g++++ +wp+ar++V+g e++++++ +   ++++ +   +    +  l+++
      CCE31289.1 468 EREGIAKHGAKLVTAVACATVPKFTVVVGGSYGAGNYGMCGRAYGPRFLWMWPNARVGVMGSEQLATVMETVGGQKNKSA---P----EGDLRSR 555
                     *********************************************************************99998887722...2....3444444 PP

                     HHHHHHHHHHHHHHHHHTTSSHHHHHHTTSSSEEEHGG CS
  Carboxyl_trans 444 eeellnpyvaaargfaDavidpsetraklvialelewk 481
                      e  ++    +ar ++D +i+p++tr++l   l+++  
      CCE31289.1 556 IEAETEATFSSARLWDDGIIPPQHTRRYLGLGLQAALG 593
                     44445567899******************999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4434.56
//
Query:       CCE31290.1  [L=900]
Description: uncharacterized protein CPUR_05141 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 6718.88
//
Query:       CCE31291.1  [L=316]
Description: uncharacterized protein CPUR_05142 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00043   19.9   0.0     0.0021   17.6   0.0    2.0  1  Lipase_2       Lipase (class 2)
      0.001   19.7   2.4     0.0016   19.1   2.4    1.5  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.012   15.2   0.1      0.028   14.0   0.1    1.6  1  Abhydrolase_1  alpha/beta hydrolase fold
      0.051   12.8   0.0       0.07   12.4   0.0    1.2  1  Hydrolase_4    Serine aminopeptidase, S33
      0.069   12.6   0.0       0.13   11.7   0.0    1.4  1  DUF900         Alpha/beta hydrolase of unknown function (DUF9


Domain annotation for each model (and alignments):
>> Lipase_2  Lipase (class 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     6e-07    0.0021       2      89 ..      48     132 ..      47     257 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6e-07
    Lipase_2   2 ePviivhGnsdlaaeklskliqkflekgyteaelYattygdteestslerlekCeyvkqlRklilaVlkyTgakkvdivahsmGvpia 89 
                 +Pv++ h+  ++    l  l+ ++  +g+     +++tyg+   s +    +       +  +i  V + Tg k+vd v+hs+G+  a
  CCE31291.1  48 NPVVMLHALGGNKNFDLGLLSGWLRFQGFCT---FSLTYGNAPGSLIGGLDHINASAPVIGAFIKQVAQRTGSKRVDLVGHSEGALQA 132
                 7999999999999999999999999999988...9999999999666655555566677999**********************8655 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   2.4   4.5e-07    0.0016       1     117 [.      50     173 ..      50     272 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.5e-07
                    EEEE--GC............GCHHHHHHHHCCTCEEEEE--TTS..TS-GGCS--HHH.CHHHHHHHCCTT....TTSEEEEEETCHHHHHHHHHH CS
  Abhydrolase_6   1 vlllHGagss.......assWlvapLaallaagvhvlapDlpGh..Grsdpppldled.ladlaalldelaa..gggpvvlvGHSlGGalalaaap 84 
                    v++lH++g++        s+Wl  ++     +g++++++ + G+  G+  +  ++ ++ +  + a++  +a+  g ++v lvGHS G++ al    
     CCE31291.1  50 VVMLHALGGNknfdlglLSGWL--RF-----QGFCTFSLTY-GNapGSLIGGLDHINAsAPVIGAFIKQVAQrtGSKRVDLVGHSEGALQALY--- 134
                    6888887755444455556676..66.....4466666666.66555334444444443455599999999999******************9... PP

                    CC...........EE.EEES-..----TTTS----TTHHHHHH CS
  Abhydrolase_6  85 la.........lvvg.vlldppptalpagllaaalelllalla 117
                    ++         +  + v ++p   a+  + l+ +++l++ l++
     CCE31291.1 135 VPkfvpgvaplV-DRiVSVAP---ATHGTSLSGLWTLVRLLGR 173
                    666667778744.44599999...7777666666666654443 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   7.9e-06     0.028       1     115 [.      48     158 ..      48     232 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.9e-06
                    SEEEEE-STTTCGGGGTTGHHHHHHHHT.TSEEEEEEETTSTTSSS.TTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakd.gfdvillDlrGvgySsp.apacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey 94 
                    +++v+lh+l+g+ +   +  l ++  +  gf+++ l   + + S   +++ in   +   + ++++++ +++g +++ lvGhS G ++al++    
     CCE31291.1  48 NPVVMLHALGGNKNFDLG--LLSGWLRFqGFCTFSLTYGNAPGSLIgGLDHINASAPV--IGAFIKQVAQRTGSKRVDLVGHSEGALQALYVPKFV 139
                    689999999998888777..66665533344444443333333332033333344444..8999*************************9887776 PP

                    ...GGGEEEEEEESECSSCCHHHH CS
  Abhydrolase_1  95 ...perVkalvllgaidpaaslie 115
                          V+++v++++     ++  
     CCE31291.1 140 pgvAPLVDRIVSVAP-----ATHG 158
                    888788999999998.....4444 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.9e-05      0.07      63     116 ..     105     161 ..      88     221 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
  Hydrolase_4  63 aafvekvkeehpelplfllGhSmGGliallyl...lrypdkvaglilsaPalkikak 116
                   af+++v+++ + +++ l+GhS G+l al +       ++ v++++ +aPa    + 
   CCE31291.1 105 GAFIKQVAQRTGSKRVDLVGHSEGALQALYVPkfvPGVAPLVDRIVSVAPATHGTSL 161
                  589***********************99987733344445799********987754 PP

>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.8e-05      0.13      73     120 ..      97     138 ..      94     157 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.8e-05
      DUF900  73 aeasrdalekllrylatkksakkihllaHSmGtwlvlealrqlaiead 120
                 ++as++ +  +++++a+ ++ k+++l+ HS G       l++l   ++
  CCE31291.1  97 INASAPVIGAFIKQVAQRTGSKRVDLVGHSEGA------LQALYVPKF 138
                 78999**************************95......455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2602.19
//
Query:       CCE31292.1  [L=147]
Description: uncharacterized protein CPUR_05143 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-38  129.7   0.1    5.1e-38  129.5   0.1    1.0  1  rhaM      L-rhamnose mutarotase


Domain annotation for each model (and alignments):
>> rhaM  L-rhamnose mutarotase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.1   2.8e-42   5.1e-38       1     107 [.      35     145 ..      35     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 2.8e-42
        rhaM   1 RyaqvlklkpeaieeYkklHaevwpevlealkeagirnysIyldeegntLfailev.gddeeadaaaaaadpkvqeWwalmaklqe.....aapsaspa 93 
                 R++qv+klk++++eeYkk+Ha++wpev +++k++gi +ysIy+d+++++Lf+ +++ g d++ d++++a++pkv+eWw++++++qe     a++  s++
  CCE31292.1  35 RFGQVIKLKKGCVEEYKKCHANIWPEVVKQIKDCGIVDYSIYYDDNTGLLFGSYKYiGYDYAGDMERMADNPKVREWWKMTDSYQEslvpgAVS--SES 131
                 89************************************************************************************99865444..455 PP

        rhaM  94 keeekwteleevFh 107
                  ++++w+++eevF+
  CCE31292.1 132 VTPSWWKPMEEVFY 145
                 6789*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1313.00
//
Query:       CCE31293.1  [L=308]
Description: uncharacterized protein CPUR_05144 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2284.11
//
Query:       CCE31294.1  [L=952]
Description: uncharacterized protein CPUR_05145 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (952 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1221  (0.068102); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.54
# Mc/sec: 5307.98
//
Query:       CCE31295.1  [L=300]
Description: uncharacterized protein CPUR_05146 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-12   48.7   3.6    1.6e-12   48.1   3.6    1.3  1  EI24      Etoposide-induced protein 2.4 (EI24)


Domain annotation for each model (and alignments):
>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   3.6   8.7e-17   1.6e-12       3     177 ..      51     261 ..      49     262 .. 0.64

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 8.7e-17
                 HHHHHHHTS.TTTHHHH....HHHHHHHHHHHHHHHHHHH..-.....TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHH..........H CS
        EI24   3 lrglglllsspkllall....llplllnlllfllllvlll..w.....vllasllvllllllplwlfplvalllaapf..ygllaekv..........e 78 
                  +g+ ++ls+ +l++ +     + l ++++++++++++ +        +   +++v++++ll+l  ++++ ++++  +   +++ +            +
  CCE31295.1  51 IKGILFFLSHGSLWKPFtskiGQLLSVSAAVVGGMFAFTYlpQlavlvFTSGPFAVVSTVLLVLNESSTIINIISRNWilQQAILDTFdgtlisrnstN 149
                 677888888888887664433555555555555454444455145334444466666666666555556666666666554444444455555444330 PP

                 H.HH...........CCTTSHH.....HHHHHHHHHHHHHHHHHHH.HHTTHHH....HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTHHHHHHH CS
        EI24  79 krhl...........glvksla.....eslkslllllllllvllpl.liPvvglilsplllswltayfycfeyldlaagrsleerrallerrrayflgf 160
                    l           + +++l+       +k+    l++ ++ lpl ++Pvvg+ +++ l +   + + +  y+ l   +s ++++++l ++ + + +f
  CCE31295.1 150 ---LvrggrevksgsDPISRLGktlksPFAKFSPTALIRYVMYLPLnFVPVVGTAAFLYLQARNRGEMVHGRYFQLKE-WSGSQKQEWLNKHTGAYTAF 244
                 ...1444445555663334444333344455556678888899999888****8888888888888877777766655.8******************* PP

                 HHHHHHHTTSCCHHCTH CS
        EI24 161 GllvslllliPllnllf 177
                 G++++ll +iP+ n++f
  CCE31295.1 245 GMVATLLEMIPIANIFF 261
                 ****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:01.02
# Mc/sec: 888.23
//
Query:       CCE31296.1  [L=359]
Description: related to zinc cluster transcription factor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-08   32.6  12.0    1.2e-07   31.7  12.0    1.4  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7  12.0   6.7e-12   1.2e-07       1      31 [.      65      94 ..      65     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 6.7e-12
                SS-HHHHHCT---STSSSS-HHHHHCTHHHC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCt 31
                +aC++Cr kK+KCd+++P C++Ck  +l Ct
  CCE31296.1 65 KACERCRMKKTKCDGEFP-CKRCKDDGLVCT 94
                59****************.***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2554.20
//
Query:       CCE31297.1  [L=57]
Description: uncharacterized protein CPUR_05148 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 453.31
//
Query:       CCE31298.1  [L=280]
Description: uncharacterized protein CPUR_05149 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.071   13.4  20.4       0.93    9.8   5.9    2.9  3  OmpH            Outer membrane protein (OmpH-like)
      0.084   12.6   0.9       0.29   10.9   0.4    2.2  2  Flavi_capsid    Flavivirus capsid protein C
       0.11   12.6  13.8       0.44   10.6   3.3    2.5  2  ADIP            Afadin- and alpha -actinin-Binding
       0.36   11.4  15.3        1.6    9.4   2.7    2.7  2  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
       0.43   10.8   7.6        1.6    9.0   0.6    2.7  2  Spc24           Spc24 subunit of Ndc80
       0.47   10.8  13.6        3.9    7.9   3.6    2.9  2  CLZ             C-terminal leucine zipper domain of cyclic nu
       0.54   10.3   6.9       0.13   12.3   0.4    2.3  2  Laminin_II      Laminin Domain II
       0.58    9.8   9.9        1.2    8.8   2.1    2.3  2  GrpE            GrpE
        1.2    8.1  17.8        1.2    8.2   4.8    2.2  2  Atg14           Vacuolar sorting 38 and autophagy-related sub
        1.3    8.6   8.7        0.8    9.2   0.4    2.2  2  PEARLI-4        Arabidopsis phospholipase-like protein (PEARL
        1.7    8.8   9.1         14    5.8   0.7    3.0  2  Mst1_SARAH      C terminal SARAH domain of Mst1
        2.4    8.0   9.5          6    6.7   0.1    3.1  3  Viral_P18       ssRNA positive strand viral 18kD cysteine ric
        2.5    8.3  23.2       0.42   10.7   4.8    4.2  4  bZIP_1          bZIP transcription factor
        2.7    8.2  10.7       0.51   10.5   2.7    2.6  2  IFT20           Intraflagellar transport complex B, subunit 2
        3.2    6.5  19.0       0.85    8.4   4.1    2.4  3  Spc7            Spc7 kinetochore protein
        3.4    7.5  20.5        2.3    8.0   4.9    3.7  3  DivIC           Septum formation initiator
        5.3    7.1   7.6        9.7    6.2   0.9    2.4  2  DUF1043         Protein of unknown function (DUF1043)
        6.1    7.4  19.8          1    9.9   3.2    3.3  3  bZIP_Maf        bZIP Maf transcription factor
        8.2    4.9   8.2         38    2.7   8.2    1.9  1  FapA            Flagellar Assembly Protein A
        9.5    6.9  10.6        5.7    7.6   1.0    2.9  2  YabA            Initiation control protein YabA
        9.8    6.3  15.6         14    5.8   5.1    2.4  2  Mod_r           Modifier of rudimentary (Mod(r)) protein


Domain annotation for each model (and alignments):
>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.92   7.8e+02      99     130 ..      73     104 ..       5     107 .. 0.79
   2 ?    9.2   5.5    0.0017       1.5      13      78 ..     107     173 ..      94     181 .. 0.68
   3 ?    9.8   5.9    0.0011      0.93      11      65 ..     188     251 ..     182     275 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.92
                 HHHHHHHHHHTT-SEEEE.GGG-S---GGGB- CS
        OmpH  99 nkaikevakekgydlvldsrgavlyaddklDi 130
                    +++v kek + +++ ++  ++ ++d+lD+
  CCE31298.1  73 FSYVEQVTKEKFIRAIVGEPPLIVNSQDNLDL 104
                 46789999999999999966777777888886 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0017
                 HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..-HHHHHHHHHHHHHHHHHHHH CS
        OmpH  13 espegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.ekeekeqelqkkeqelqqkqqq 78 
                 e  ++ka  + l+++ + + aele+++++l + +e +q ++ kl e +++ +el+ + + l+++q++
  CCE31298.1 107 ENAQTKAQLKSLKQEMALMVAELEKRGRQLSQRYESIQLDTIKLqEIPARSEELRGRIDGLRALQEN 173
                 4556677777777777777777777777777777777755555444888888888888888884443 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0011
                 HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..........-HHHHHHH CS
        OmpH  11 leespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e........keekeqel 65 
                 l+  + +ka q++le++ ++lqa++ +k+ke ++lq+el   ++kl +        +++ke +l
  CCE31298.1 188 LRLVDRRKAEQQELERELEALQAKVPRKRKEAERLQAELGPLEAKLhTssvaareaRRRKEAAL 251
                 5566778899999999999999999999999999999887555555446666643333333333 PP

>> Flavi_capsid  Flavivirus capsid protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.4   3.7e+03       7      19 ..       5      17 ..       2      27 .. 0.60
   2 ?   10.9   0.4   0.00034      0.29      69     100 ..     109     140 ..     105     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.4
  Flavi_capsid  7 rgvnmlkrgakrv 19
                  ++  ml+r +++ 
    CCE31298.1  5 QALEMLRRLQSKQ 17
                  4556677666554 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00034
  Flavi_capsid  69 kqAlkvLkkfkkevgtlldslnrRkkkrskrg 100
                    q  + Lk++k+e++ ++  l++R+++ s+r 
    CCE31298.1 109 AQTKAQLKSLKQEMALMVAELEKRGRQLSQRY 140
                   567789********************988774 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.9    0.0064       5.4      95     134 ..      99     138 ..      94     153 .. 0.81
   2 ?   10.6   3.3   0.00051      0.44      47     104 ..     190     247 ..     183     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0064
        ADIP  95 akerqlekklktleqklknekeelqrlknalqqiktqyah 134
                 ++  +le+++++++++lk++k+e++ +   l+++  q+++
  CCE31298.1  99 QDNLDLERENAQTKAQLKSLKQEMALMVAELEKRGRQLSQ 138
                 677789999****************999999999888876 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00051
        ADIP  47 ardrdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekkl 104
                   dr ++++++l+++++ l+a   r++++ erl+++l  le +l ++  + r+++++ 
  CCE31298.1 190 LVDRRKAEQQELERELEALQAKVPRKRKEAERLQAELGPLEAKLHTSSVAAREARRRK 247
                 5577788888999999999999999999999999999999999988888777777764 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.9      0.01       8.8      19      80 ..      98     159 ..      94     175 .. 0.75
   2 ?    9.4   2.7    0.0019       1.6      10      48 ..     186     224 ..     184     261 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.01
  HIP1_clath_bdg  19 rqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseq 80 
                      q   ++ere  +++ +l++lk+e   +++e ++   +L +  e+ + +  +l++  ++se+
      CCE31298.1  98 SQDNLDLERENAQTKAQLKSLKQEMALMVAELEKRGRQLSQRYESIQLDTIKLQEIPARSEE 159
                     56777999999999999999999999999998888888888888777777777666555544 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0019
  HIP1_clath_bdg  10 evtkqlsvarqaqeeverekkeleeelerlkeeaerkle 48 
                      + +++   +++q+e+ere + l+ ++ r ++eaer  +
      CCE31298.1 186 KTLRLVDRRKAEQQELERELEALQAKVPRKRKEAERLQA 224
                     567777777777777777777777777777777766443 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.3     0.038        33       8      42 ..     103     137 ..      96     178 .. 0.61
   2 ?    9.0   0.6    0.0018       1.6       4      44 ..     196     241 ..     193     273 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.038
       Spc24   8 riakelsdleselesleselaelkeeleeleeese 42 
                 ++  e+ +++++l+sl++e a + +ele+  ++ +
  CCE31298.1 103 DLERENAQTKAQLKSLKQEMALMVAELEKRGRQLS 137
                 44444444444444444444444444444333333 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0018
       Spc24   4 nekfriakelsdleselesleselaelkeeleeleeesee.....k 44 
                  e++++  el+ l++++ + ++e ++l++el  le + +      +
  CCE31298.1 196 AEQQELERELEALQAKVPRKRKEAERLQAELGPLEAKLHTssvaaR 241
                 5778888899999999999999999999999999988887544431 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.6    0.0046       3.9      24      67 ..      99     142 ..      95     145 .. 0.87
   2 ?    7.1   2.4    0.0083       7.1      23      61 ..     195     233 ..     187     236 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0046
         CLZ  24 aeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRitk 67 
                 +++ +le+   + +++L++L++ +a ++ae+e+  r+L qR + 
  CCE31298.1  99 QDNLDLERENAQTKAQLKSLKQEMALMVAELEKRGRQLSQRYES 142
                 567788999999999**************************876 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0083
         CLZ  23 gaeqkeleekverLessLeaLqtrlarLlaeyessqrkL 61 
                 +aeq+ele+ +e L++++    +  +rL ae+   ++kL
  CCE31298.1 195 KAEQQELERELEALQAKVPRKRKEAERLQAELGPLEAKL 233
                 567777777777777777777777777777777777776 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   1.4      0.59     5e+02      42      78 ..     110     148 ..      96     176 .. 0.37
   2 ?   12.3   0.4   0.00015      0.13      12      74 ..     198     261 ..     189     276 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.59
                 XXXXXXXXXXXXXXX....XXXXXXXX--TTTTTGGGHHHH CS
  Laminin_II  42 etnekvkdankaird....ArrsvkkLeklapqLldklkel 78 
                 +t++++k++++ +++     ++  ++L +  + +  +l ++
  CCE31298.1 110 QTKAQLKSLKQEMALmvaeLEKRGRQLSQRYESI--QLDTI 148
                 3333333332222220000222223333333332..22233 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00015
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX--TTTTTGGG CS
  Laminin_II  12 akevleqlaplsqnlentkeklseinrsveetnekvkdankairdArr.svkkLeklapqLldk 74 
                  +e ++ l++l++++++ +++++++++++   ++k++ ++ a r+Arr +   L  +a++L+++
  CCE31298.1 198 QQELERELEALQAKVPRKRKEAERLQAELGPLEAKLHTSSVAAREARRrKEAALGGVADDLEQR 261
                 5788999***************************************861556788888888776 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.1     0.015        13      16      48 ..     103     135 ..      91     161 .. 0.54
   2 ?    8.8   2.1    0.0014       1.2      11      59 ..     195     243 ..     190     275 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.015
                 CCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHH CS
        GrpE  16 eleeeleelekevkelkekllrllaefenlrkr 48 
                 +le+e ++ ++++k+lk+++    ae+e+  ++
  CCE31298.1 103 DLERENAQTKAQLKSLKQEMALMVAELEKRGRQ 135
                 344444444444444444444444444433333 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0014
                 HHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHH CS
        GrpE  11 edeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkf 59 
                 ++e++ele+ele+l+++v    ++ +rl+ae+  l+ ++ +   +a++ 
  CCE31298.1 195 KAEQQELERELEALQAKVPRKRKEAERLQAELGPLEAKLHTSSVAAREA 243
                 6788999999999999999999999999999876666665544444443 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.8    0.0014       1.2      75     127 ..     100     152 ..      79     163 .. 0.74
   2 ?    5.1   7.1     0.012        10      29     132 ..     148     247 ..     146     273 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0014
       Atg14  75 liadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqnelee 127
                 +  dl++++++ k++l++lk+e++   ++l+k+ ++l++R++++++ + +l+e
  CCE31298.1 100 DNLDLERENAQTKAQLKSLKQEMALMVAELEKRGRQLSQRYESIQLDTIKLQE 152
                 45567777777777777777777777777777777777777777665555554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.012
       Atg14  29 erlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqnelee 127
                 ++l+ + +++e+l+++i+ + + +e     +d+  +++  l ++  l+ + +++ qel+  l+ l++++  k+k+ ++l+++l    ++l   +   +e
  CCE31298.1 148 IKLQEIPARSEELRGRIDGLRALQE----NADADPSLNLPLAKTLRLVDRRKAEQQELERELEALQAKVPRKRKEAERLQAELGPLEAKLHTSSVAARE 242
                 5777888889999999997776666....4455555555555555555566666677777777777777777777777777777444444444443333 PP

       Atg14 128 rrkkq 132
                 +r+++
  CCE31298.1 243 ARRRK 247
                 33332 PP

>> PEARLI-4  Arabidopsis phospholipase-like protein (PEARLI 4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4   0.00094       0.8     187     252 ..      98     165 ..      67     178 .. 0.82
   2 ?    3.0   2.6     0.076        65     201     243 ..     190     232 ..     185     242 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00094
    PEARLI-4 187 eqetavvEKevk..erdvllkkqEmekqekelaekEKeikevrekvtemaaklgelemkrarlekrla 252
                  q++ + E+e      ++++ kqEm  +++el ++ +++ +  e ++  + kl e+ ++   l  r++
  CCE31298.1  98 SQDNLDLERENAqtKAQLKSLKQEMALMVAELEKRGRQLSQRYESIQLDTIKLQEIPARSEELRGRID 165
                 466666676655115678888********************999999999999999988887776665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.076
    PEARLI-4 201 dvllkkqEmekqekelaekEKeikevrekvtemaaklgelemk 243
                  v  +k E ++ e+el     ++   r++ ++++a+lg le+k
  CCE31298.1 190 LVDRRKAEQQELERELEALQAKVPRKRKEAERLQAELGPLEAK 232
                 5666777888888888888888888888888888888888877 PP

>> Mst1_SARAH  C terminal SARAH domain of Mst1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.7     0.017        14       9      36 ..     115     142 ..     111     144 .. 0.89
   2 ?    5.8   2.2     0.017        15      21      39 ..     199     217 ..     189     217 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.017
  Mst1_SARAH   9 vdeLqqrlasLDpeMEqEieelrkrYqa 36 
                 ++ L+q +a + +e+E+  ++l +rY++
  CCE31298.1 115 LKSLKQEMALMVAELEKRGRQLSQRYES 142
                 5679**********************85 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.017
  Mst1_SARAH  21 peMEqEieelrkrYqaKRq 39 
                 +e+E+E+e l+++  +KR+
  CCE31298.1 199 QELERELEALQAKVPRKRK 217
                 79**************997 PP

>> Viral_P18  ssRNA positive strand viral 18kD cysteine rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.83     7e+02      77     101 ..      97     121 ..      59     132 .. 0.66
   2 ?    6.7   0.1     0.007         6      68     105 ..     134     170 ..     126     182 .. 0.84
   3 ?    4.3   2.2     0.039        33      70     113 ..     184     227 ..     179     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.83
   Viral_P18  77 vsddelkldrlearresllasiqkk 101
                  s+d+l+l+r +a+ ++ l s++++
  CCE31298.1  97 NSQDNLDLERENAQTKAQLKSLKQE 121
                 4566777777666666655555544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.007
   Viral_P18  68 yklsealkdvsddelkldrlearresllasiqkklkay 105
                  +ls+ +  +++d +kl+ + ar e l+ +i   l+a 
  CCE31298.1 134 RQLSQRYESIQLDTIKLQEIPARSEELRGRI-DGLRAL 170
                 5799999*********************999.555554 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.039
   Viral_P18  70 lsealkdvsddelkldrlearresllasiqkklkaydekialla 113
                 l ++l+ v+ ++ + + le++ e+l+a++ +k k  ++  a l 
  CCE31298.1 184 LAKTLRLVDRRKAEQQELERELEALQAKVPRKRKEAERLQAELG 227
                 67889999999******************999998887777665 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   2.2      0.25   2.2e+02      38      58 ..     104     124 ..     101     132 .. 0.77
   2 ?   -0.3   1.1       1.4   1.2e+03      35      40 ..     126     131 ..     112     165 .. 0.59
   3 ?   10.7   4.8   0.00049      0.42      23      60 ..     193     230 ..     185     234 .. 0.87
   4 ?    5.0   0.7     0.031        26      15      27 ..     238     250 ..     237     274 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  38 LekeNksLkseleelkkevek 58 
                 Le eN++ k +l++lk e++ 
  CCE31298.1 104 LERENAQTKAQLKSLKQEMAL 124
                 788888888888888888775 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.4
                 HHHHHH CS
      bZIP_1  35 vkaLek 40 
                 v++Lek
  CCE31298.1 126 VAELEK 131
                 222222 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00049
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  23 RKqaeieeLerrvkaLekeNksLkseleelkkevekLk 60 
                 R++ae++eLer+ +aL+++    ++e+e+l+ e   L+
  CCE31298.1 193 RRKAEQQELERELEALQAKVPRKRKEAERLQAELGPLE 230
                 9*****************************98876665 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.031
                 HHHHHHHHHHHHH CS
      bZIP_1  15 eaArrsRqRKqae 27 
                 +aAr+ R+RK+a 
  CCE31298.1 238 VAAREARRRKEAA 250
                 59********985 PP

>> IFT20  Intraflagellar transport complex B, subunit 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   1.1      0.31   2.7e+02      71     111 ..     105     143 ..      61     153 .. 0.60
   2 ?   10.5   2.7    0.0006      0.51      71     106 ..     195     230 ..     187     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.31
       IFT20  71 kseakqreaeqqqlqaliaekkaeleRlrvelesLqkveqe 111
                 + e+ q +a+ + l++++a   aele+     +  q++e+ 
  CCE31298.1 105 ERENAQTKAQLKSLKQEMALMVAELEKRGR--QLSQRYESI 143
                 333344444444444444444444443222..222333333 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0006
       IFT20  71 kseakqreaeqqqlqaliaekkaeleRlrvelesLq 106
                 k+e+++ e+e ++lqa++  k++e eRl++el  L+
  CCE31298.1 195 KAEQQELERELEALQAKVPRKRKEAERLQAELGPLE 230
                 56788899999********************98776 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.5     3e+03     274     293 ..       9      28 ..       5      30 .. 0.75
   2 ?    8.4   4.1     0.001      0.85     194     258 ..     108     172 ..      95     179 .. 0.84
   3 ?    7.4  12.6     0.002       1.7     137     264 ..     115     247 ..     115     269 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.5
        Spc7 274 evkaleeltgwkivslsgst 293
                  +++l+++ +++i++l+++ 
  CCE31298.1   9 MLRRLQSKQEISIIKLRDTF 28 
                 57788888888888888765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.001
        Spc7 194 esidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervle 258
                 ++ +k++L++l++e+a   ae+e++ ++l+++ e ++  + k++e+ ++ +el+ +i   + ++e
  CCE31298.1 108 NAQTKAQLKSLKQEMALMVAELEKRGRQLSQRYESIQLDTIKLQEIPARSEELRGRIDGLRALQE 172
                 2345999*******************************************999999987766665 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.002
        Spc7 137 legLkegleenlegleedkelLekqeeel..del.lpeleeekaeleeeleklqeaaeelesidkeeL..eelreelaelkaeieekkkelaelqeqle 230
                 l++Lk+++   +++le+  ++L+++ e +  d++ l+e+ ++ +el+ +++ l++ +e+ ++  + +L  +++ + +++ kae +e+++el+ lq+++ 
  CCE31298.1 115 LKSLKQEMALMVAELEKRGRQLSQRYESIqlDTIkLQEIPARSEELRGRIDGLRALQENADADPSLNLplAKTLRLVDRRKAEQQELERELEALQAKVP 213
                 57899********************9987334552578889999***********99998886655550045556678888888888888888888888 PP

        Spc7 231 eleekieelkeqkseleeeiaeaervleeckgws 264
                 +++++ e l+++   le+++  +    +e ++ +
  CCE31298.1 214 RKRKEAERLQAELGPLEAKLHTSSVAAREARRRK 247
                 8888888888888888777776666555555544 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   4.9     0.027        23      19      59 ..     101     131 ..      94     146 .. 0.56
   2 ?    0.3   0.1      0.72   6.2e+02      31      51 ..     148     168 ..     134     180 .. 0.60
   3 ?    8.0   4.9    0.0027       2.3      17      50 ..     196     229 ..     187     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXX CS
       DivIC  19 ykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyiee 59 
                   +l++e a+ +a+l++lk+e        +++    + +e+
  CCE31298.1 101 NLDLERENAQTKAQLKSLKQE-------MALM---VAELEK 131
                 445555666666666666655.......4444...233333 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.72
                 HHHHHHHHHHHHHHHHHCC-X CS
       DivIC  31 aelaklkaeneeLeaevkdLk 51 
                  +l+++ a+ eeL  +++ L+
  CCE31298.1 148 IKLQEIPARSEELRGRIDGLR 168
                 456666666666666666664 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0027
                 XHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC  17 laykqlkqeiaalqaelaklkaeneeLeaevkdL 50 
                   +++l++e++alqa++ ++++e e+L+ae+  L
  CCE31298.1 196 AEQQELERELEALQAKVPRKRKEAERLQAELGPL 229
                 67899************************98655 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.9     0.045        39      25      66 ..     100     141 ..      94     171 .. 0.71
   2 ?    6.2   0.9     0.011       9.7      16      47 ..     188     219 ..     185     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.045
     DUF1043  25 kqkklekelekakaeleeqkqeledHfaqsaelLetlaedyq 66 
                  + +le+e  ++ka+l+  kqe++   a+  +  ++l+++y+
  CCE31298.1 100 DNLDLERENAQTKAQLKSLKQEMALMVAELEKRGRQLSQRYE 141
                 555677778888888888888866555555554444444444 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.011
     DUF1043  16 lrltnsklkkqkklekelekakaeleeqkqel 47 
                 lrl+++  ++q++le+ele+ +a++ + ++e 
  CCE31298.1 188 LRLVDRRKAEQQELERELEALQAKVPRKRKEA 219
                 79999999*****************9999985 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.2    0.0012         1      51      90 ..      99     138 ..      97     140 .. 0.90
   2 ?    5.8   4.1     0.024        20      48      88 ..     193     226 ..     185     235 .. 0.57
   3 ?   -0.6   0.2       2.3     2e+03      39      59 ..     237     257 ..     233     275 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0012
    bZIP_Maf  51 qqkeelekekeeleeelerlqqelsrlrqekdalkrkneq 90 
                 q+  +le+e+++++ +l++l+qe++++ +e+++  r+  q
  CCE31298.1  99 QDNLDLERENAQTKAQLKSLKQEMALMVAELEKRGRQLSQ 138
                 66789***************************99888766 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.024
    bZIP_Maf  48 rrlqqkeelekekeeleeelerlqqelsrlrqekdalkrkn 88 
                 rr        +e++ele+ele+lq+++ r r+e ++l+++ 
  CCE31298.1 193 RRK-------AEQQELERELEALQAKVPRKRKEAERLQAEL 226
                 444.......4555555555555555555555555555544 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2.3
    bZIP_Maf  39 rgyakscrkrrlqqkeeleke 59 
                 +++a+++r+r+     ++++ 
  CCE31298.1 237 SVAAREARRRKEAALGGVADD 257
                 678888888886665555554 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   8.2     0.045        38     340     419 ..     134     224 ..      69     245 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.045
        FapA 340 keleeeleeleeeleklkkk..........ikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeea.kikv 419
                 ++l +++e+++  + kl++           i+ l++l+++ + ++     l+k+l+   + k e +ele+el++l++++ +k++ea ++++
  CCE31298.1 134 RQLSQRYESIQLDTIKLQEIparseelrgrIDGLRALQENADADPSLNLPLAKTLRLVDRRKAEQQELERELEALQAKVPRKRKEAeRLQA 224
                 3344444444222222222255566666668888888888888888888888888888888888888888888888888888666555554 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   2.8       0.2   1.7e+02      16      67 ..     107     130 ..      98     181 .. 0.55
   2 ?    7.6   1.0    0.0067       5.7      14      62 ..     195     243 ..     184     260 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXX CS
        YabA  16 qleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkels 67 
                 + ++++++l++lk+e+a ++ e                            l+
  CCE31298.1 107 ENAQTKAQLKSLKQEMALMVAE----------------------------LE 130
                 3444444444444444433332............................22 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0067
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXX CS
        YabA  14 eeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekek 62 
                 + + +el +ele+l++++ +  +e ++L++e   l  +l++++ +++e 
  CCE31298.1 195 KAEQQELERELEALQAKVPRKRKEAERLQAELGPLEAKLHTSSVAAREA 243
                 556789999**********************999999994333333222 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.1     0.016        14      47      97 ..      99     149 ..      94     163 .. 0.85
   2 ?    4.5   4.1     0.041        35      47      87 ..     196     236 ..     149     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.016
       Mod_r  47 eknlslepeleelrselqekleelkelekefeekeqeldellqkfspdall 97 
                 ++nl+le e  + +++l++  +e++ + +e+e+  ++l++ +++ ++d+++
  CCE31298.1  99 QDNLDLERENAQTKAQLKSLKQEMALMVAELEKRGRQLSQRYESIQLDTIK 149
                 679999999999999999999999999999999999999999988888875 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.041
       Mod_r  47 eknlslepeleelrselqekleelkelekefeekeqeldel 87 
                  ++ +le ele l++++  k++e+++l++e+  +e++l++ 
  CCE31298.1 196 AEQQELERELEALQAKVPRKRKEAERLQAELGPLEAKLHTS 236
                 45777888999999999999999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1310  (0.073066); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 1769.58
//
Query:       CCE31299.1  [L=407]
Description: uncharacterized protein CPUR_05150 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.72    9.7   3.6          3    7.7   0.0    3.2  3  B12D      NADH-ubiquinone reductase complex 1 MLRQ subunit


Domain annotation for each model (and alignments):
>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.27   4.8e+03      51      63 ..      85      97 ..      77     103 .. 0.53
   2 ?    0.9   0.3     0.023   4.1e+02      32      59 ..     303     331 ..     301     337 .. 0.77
   3 ?    7.7   0.0   0.00017         3      27      46 ..     354     373 ..     352     376 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.27
        B12D 51 kegkfysenrdyl 63
                +e ++++ n+d  
  CCE31299.1 85 EEMRRIKSNPDAR 97
                5555555554433 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.023
        B12D  32 DVrwnkknnpepW.nklknnkegkfysen 59 
                 DV+ + +n++ pW + ++     ++++ n
  CCE31299.1 303 DVQMDVDNDEDPWdEAVESFRDRQKMRLN 331
                 9999*********7667766666666655 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00017
        B12D  27 lltnPDVrwnkknnpepWnk 46 
                 ++  P+V+w+k +++++W k
  CCE31299.1 354 AMAEPHVVWSKAGEKREWDK 373
                 6789**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1330  (0.0741815); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 2715.20
//
Query:       CCE31300.1  [L=246]
Description: uncharacterized protein CPUR_05151 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   12.6   3.4      0.033   12.3   3.4    1.1  1  Patched    Patched family
      0.074   12.3   1.5       0.35   10.1   0.8    1.9  2  CobD_Cbib  CobD/Cbib protein
      0.083   11.6   0.0       0.11   11.3   0.0    1.1  1  DUF2207    Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.4   5.6e-06     0.033     312     399 ..     117     208 ..     106     241 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.6e-06
     Patched 312 eaklsvkkrigealseagvaitiTslTdvlsF..giGaittlpaiqlFciytavailf..dfiYqitffaavlaiaakaeaegrhsllliie 399
                 ++ ++ + r  ++  ++  +++ Ts T +l    +i +it + ai +  ++ta+ i++  + i  it+ +a+ ai+++ + e+ + ll+ ++
  CCE31300.1 117 SRARTPRGRYRQCTRDSTTSLSTTSCTTLLPVitAITIITVITAITIITVITAITIITviTAITIITVITAITAITMESNKEHIEALLKDLT 208
                 556668889999999************99875348999***************999862245666777777777777766666656655544 PP

>> CobD_Cbib  CobD/Cbib protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.048   2.9e+02     210     251 ..      22      63 ..      11      85 .. 0.70
   2 ?   10.1   0.8   5.8e-05      0.35      49     101 ..     153     207 ..     118     214 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.048
   CobD_Cbib 210 alriarrdarkhpSpNsgwpeaalAgalgvrLggpnvYlgkl 251
                 ++ ++rr   ++p    g + aa+A a + +L+ +++ ++  
  CCE31300.1  22 VVLVVRRPVDDDPVSQRGPSSAAAAYAEKWKLATRRTGRNAR 63 
                 356778888888888899999999999999998877654443 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 5.8e-05
   CobD_Cbib  49 alllvllallvalllllla.laall..glvlealllkltlalrsLleevrkvakal 101
                 ++++v++a+++++++++++ + +++   ++++++ + +++ ++s +e++++ +k+l
  CCE31300.1 153 TIITVITAITIITVITAITiI-TVItaITIITVITAITAITMESNKEHIEALLKDL 207
                 233333333333333332221.1112234777888888888888888888877776 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.8e-05      0.11     306     435 ..      55     194 ..      29     206 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.8e-05
     DUF2207 306 tilkkndeeldpyEkalldlLfdkseeg.kslkeikkyakkskk.....kakkfkkalkkwksavkk...kergyfdkkgkkklkklsalglgliilgl 395
                 t++   ++  d+   ++ ++L ++s+++ + l + ++ +++s k      a  f++ l++  s  +    ++r+  ++   +  +++++ +l +i +++
  CCE31300.1  55 TRRTGRNARQDEKKITVSEILENGSDSKrQLLGRAERSSRTSTKrlgagAAVYFSAPLNAHPSRARTprgRYRQCTRDSTTSLSTTSCTTLLPVITAIT 153
                 444444555588888889999988888855566666666666667777788888888888888888888877788888877888888888887777777 PP

     DUF2207 396 ilillallllvlllvfllilllilll.iaiivlllfsrllg 435
                 i++++++++++++++ + i+++i ++ i+ +++++ +++++
  CCE31300.1 154 IITVITAITIITVITAITIITVITAItIITVITAITAITME 194
                 77777777766643333333332222033333333334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1474  (0.0822132); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1778.95
//
Query:       CCE31301.1  [L=866]
Description: uncharacterized protein CPUR_05152 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-12   47.7   4.9    2.3e-12   47.0   4.9    1.3  1  zf-RING_2     Ring finger domain
    4.2e-10   39.5   0.0    9.6e-10   38.4   0.0    1.6  1  PA            PA domain
    2.4e-09   36.9   3.8    3.8e-09   36.2   3.8    1.3  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
      1e-08   35.3   2.0      2e-08   34.4   2.0    1.5  1  zf-rbx1       RING-H2 zinc finger domain
    1.4e-08   34.3   1.6    1.4e-08   34.3   1.6    1.8  2  zf-RING_11    RING-like zinc finger
    2.7e-08   33.6   2.5    4.2e-08   32.9   2.5    1.3  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    7.9e-07   28.9   2.1    1.2e-06   28.3   2.1    1.3  1  zf-RING_5     zinc-RING finger domain
    3.2e-06   27.1   1.4    2.6e-05   24.1   2.0    2.1  2  zf-RING_UBOX  RING-type zinc-finger
    2.2e-05   24.2   2.9    3.3e-05   23.7   2.9    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0017   18.4   0.9     0.0035   17.4   0.9    1.5  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
     0.0031   17.5   4.0     0.0031   17.5   4.0    2.1  2  PRIMA1        Proline-rich membrane anchor 1
     0.0075   16.1   2.6      0.013   15.4   2.6    1.3  1  Prok-RING_4   Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.028   14.1   2.5      0.053   13.2   2.5    1.4  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
       0.15   12.3   2.4       0.44   10.8   2.4    1.9  1  FANCL_C       FANCL C-terminal domain
        0.2   11.9   2.2       0.45   10.7   2.2    1.6  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
       0.39   10.9   3.2       0.79    9.9   3.2    1.6  1  RINGv         RING-variant domain
       0.42   11.2   5.5        1.2    9.7   5.5    1.8  1  IHABP4_N      Intracellular hyaluronan-binding protein 4 N-te
       0.57   10.5   3.2          1    9.7   3.2    1.4  1  zf-RING-like  RING-like domain
          1    9.2   3.1        1.8    8.4   3.1    1.4  1  zf-RING_4     RING/Ubox like zinc-binding domain
        6.4    7.2   7.1        2.2    8.7   2.2    2.8  2  PBP1_TM       Transmembrane domain of transglycosylase PBP1 a


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   4.9   2.6e-15   2.3e-12       2      44 .]     704     748 ..     703     748 .. 0.90

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 2.6e-15
   zf-RING_2   2 eCpICleelssads.vlllpCgHvfhreClerwlrssst.CPlCr 44 
                 eC++Clee+ ++ s v++lpCgH fh +C++ wl+++++ CP+C+
  CCE31301.1 704 ECVVCLEEYVDGVSrVMRLPCGHEFHADCITPWLTTRRRtCPICK 748
                 8********8887746688**************9999999****7 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   1.1e-12   9.6e-10      15      88 ..     200     280 ..     182     281 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.1e-12
          PA  15 isadfe....gvdvkGkivLvqr...tfaeKarnAqaaGAagviivndgelgaatgasgnegepdgitiPavgvsredgea 88 
                 ++ad +    + +++Gk+vL +r    f eK+  Aq+ GA++vi+ +++++g+  +   + +e d++t+P+v+  r++++ 
  CCE31301.1 200 AHADIQsiqeAAEIEGKVVLLKRggcGFLEKVMWAQRRGAVAVIVGDNQKGGPLIQMFAHGDEVDNVTVPSVFTARTTAQL 280
                 44555567677899********************************98889999999999999**********99999876 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   3.8   4.3e-12   3.8e-09       1      40 []     704     747 ..     704     747 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 4.3e-12
  zf-C3HC4_2   1 kCpiCldmlkdpsvvt...pCgHvfCqkCilrsLeekn.eCPlC 40 
                 +C +Cl+++ d++      pCgH f+++Ci ++L+     CP+C
  CCE31301.1 704 ECVVCLEEYVDGVSRVmrlPCGHEFHADCITPWLTTRRrTCPIC 747
                 6**********96433568****************9999***** PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   2.0   2.2e-11     2e-08      14      55 .]     705     748 ..     698     748 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.2e-11
     zf-rbx1  14 cieckapgdee.cpvvlGeCgHaFHlhCiskWlkt.rkvCPlcr 55 
                 c+ c ++  +    v+   CgH+FH +Ci+ Wl+t r++CP+c+
  CCE31301.1 705 CVVCLEEYVDGvSRVMRLPCGHEFHADCITPWLTTrRRTCPICK 748
                 5555555555534455568***************98889****6 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   1.6   1.6e-11   1.4e-08       1      29 []     704     733 ..     704     733 .. 0.91
   2 ?   -2.3   0.1       4.4     4e+03       2      10 ..     744     752 ..     744     756 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.6e-11
  zf-RING_11   1 eCsICLeefkpgq.alfilpCsHtFHfkCI 29 
                 eC++CLee+ +g  +++ lpC+H FH +CI
  CCE31301.1 704 ECVVCLEEYVDGVsRVMRLPCGHEFHADCI 733
                 9*********999455899**********9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.4
  zf-RING_11   2 CsICLeefk 10 
                 C IC  ++ 
  CCE31301.1 744 CPICKGDVV 752
                 9***88776 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   2.5   4.6e-11   4.2e-08       1      41 []     705     747 ..     705     747 .. 0.97

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 4.6e-11
                 -TTT-S--SS-E....E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn...elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C +Clee+++ +   + l+C+H+f+ +Ci+ +l   + ++CP+C
  CCE31301.1 705 CVVCLEEYVDGVsrvMRLPCGHEFHADCITPWLT-TRRRTCPIC 747
                 9**********9999*******************.89999**** PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   2.1   1.4e-09   1.2e-06       1      43 [.     704     748 ..     704     749 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.4e-09
   zf-RING_5   1 hCnkCfekl.skeekfyltsCgHifCekClkkll.ekeavCpiCr 43 
                 +C +C e++  + ++++ ++CgH f+ +C++  l +++++CpiC+
  CCE31301.1 704 ECVVCLEEYvDGVSRVMRLPCGHEFHADCITPWLtTRRRTCPICK 748
                 6********888899*****************999*********8 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   2.0   2.9e-08   2.6e-05       1      39 []     705     745 ..     705     747 .. 0.75
   2 ?    0.7   0.3      0.63   5.7e+02       1       6 [.     744     749 ..     744     753 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 2.9e-08
  zf-RING_UBOX   1 CpIClelftdP....lvlpCGHtFCreCl..welskslegafkCP 39 
                   C +Cle++ d     + lpCGH F+ +C+  w       ++++CP
    CCE31301.1 705 CVVCLEEYVDGvsrvMRLPCGHEFHADCItpW----LTTRRRTCP 745
                   99******9334553458***********444....556666666 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.63
  zf-RING_UBOX   1 CpICle 6  
                   CpIC+ 
    CCE31301.1 744 CPICKG 749
                   ****94 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   2.9   3.7e-08   3.3e-05       2      47 ..     702     751 ..     701     754 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.7e-08
                 GSB-TTTSSS....BS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B- CS
  zf-C3HC4_3   2 deeCviCler....prnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrpi 47 
                 + eCv+Cle+     + v+ lpCgH  +  +C + +l  r+++CpiC+ ++
  CCE31301.1 702 QVECVVCLEEyvdgVSRVMRLPCGHE-FHADCITPWLTtRRRTCPICKGDV 751
                 679******855445668889*****.9********999********9876 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.9   3.9e-06    0.0035      47      79 ..     718     749 ..     695     754 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.9e-06
                 EEEBT.TS-EEEHHHHHHHHHHHSTSSB-TTTSS CS
  zf-ANAPC11  47 lvlGk.ckhnfhlhcilkwletetskglcpmcrq 79 
                  v+   c h fh+ ci+ wl t+  +  cp+c+ 
  CCE31301.1 718 RVMRLpCGHEFHADCITPWLTTR--RRTCPICKG 749
                 455545**************875..789****86 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   4.0   3.5e-06    0.0031      20      80 ..     504     566 ..     494     585 .. 0.71
   2 ?   -2.8   0.6       6.7     6e+03      25      51 ..     618     644 ..     600     654 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.5e-06
      PRIMA1  20 acqcrrypplpppppppppprllslt.aaestvsplepwwselviiia.vvcaslvfllvlvi 80 
                   q r++pp ppp+pppp+p+    +  ++ + s  +  +++l + i+  + as  f ++lv+
  CCE31301.1 504 EHQVRPPPPPPPPSPPPPSPEAEEFQeRPQQSGSGRRIVHEGLWVTITpSSSASPFFDTLLVL 566
                 5689****************9965540455555555566667655555155666666555444 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.7
      PRIMA1  25 rypplpppppppppprllsltaaestv 51 
                   p l +p+   p+  ll+ +++ s +
  CCE31301.1 618 MSPRLSSPTGATPTTPLLQHSTPISRS 644
                 556777777777777777777776665 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   2.6   1.4e-05     0.013       1      40 [.     705     751 ..     705     756 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
  Prok-RING_4   1 CvlCgeq....ekkailepCgHlvCkeCfdskdls...sCPlCqrri 40 
                  Cv+C e+     + ++  pCgH +  +C   +  +   +CP+C+  +
   CCE31301.1 705 CVVCLEEyvdgVSRVMRLPCGHEFHADCITPWLTTrrrTCPICKGDV 751
                  999999988754455557************99555567*****9665 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.5   5.9e-05     0.053       5      47 ..     703     746 ..     700     755 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.9e-05
  Zn_ribbon_17   5 ksCayC.elavkgrv.vlcgvCeHvlHasCarewfenddlaeCps 47 
                    +C++C e  v g+  v+   C+H  Ha+C+  w+++     Cp 
    CCE31301.1 703 VECVVClEEYVDGVSrVMRLPCGHEFHADCITPWLTTRR-RTCPI 746
                   578888434577765244567***************999.99995 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.4   0.00049      0.44       2      46 ..     702     742 ..     701     756 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00049
                 --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHS CS
     FANCL_C   2 eveCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrslke 46 
                 +veC +C+ + +d   v+ +      C+++fH+ C++ Wl + + 
  CCE31301.1 702 QVECVVCLEEYVD--GVSRV--MRLPCGHEFHADCITPWLTTRRR 742
                 6788888888883..33332..2467**************98775 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.2    0.0005      0.45      11      42 .]     719     747 ..     705     747 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0005
  zf-C3HC4_4  11 PvsleCGhsfClsCisslqkepdgeqllCplC 42 
                  + l+CGh f   Ci+ +         +Cp C
  CCE31301.1 719 VMRLPCGHEFHADCITPWLTTRRR---TCPIC 747
                 4779**************999976...59999 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.2   0.00088      0.79      25      48 .]     726     747 ..     702     747 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00088
                 CSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv  25 klvHesClekWldekeantqCeiC 48 
                 + +H +C+  Wl++  + ++C iC
  CCE31301.1 726 HEFHADCITPWLTT--RRRTCPIC 747
                 569**********9..9999**** PP

>> IHABP4_N  Intracellular hyaluronan-binding protein 4 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.5    0.0013       1.2      29     165 ..     307     428 ..     294     429 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0013
    IHABP4_N  29 eaekkkeekkkkkreekenkgkrkagpkgaksaakaaaakagkkesqkerkkpkkegeeqpekprtpgvdrnvkfsaskkekaq.kvlgekrapRrned 126
                 + + +k +k+   r+e++ ++++++ p+ ++++     ++ gkk++             +p+    +  +r + +s+ +k +++ +v  e r+pR ++ 
  CCE31301.1 307 QSTTAKYRKRSPARSEAAVAAAARKNPADPRTKR---STGSGKKKKT-----------LEPSPASSKSSQRRGILSHVSKGSSArPVDSESRPPRSGRL 391
                 3333444444444444444443333333333332...1222222211...........1233333344455555666566666658877*********6 PP

    IHABP4_N 127 eqq.qqgqnegrgtpvkrdkaerRpfrErrpeekeeqaef 165
                 +    + +n+++ + + +  +  +++   +++ ++++ ef
  CCE31301.1 392 DWVlVEDWNDEKDKVISKTLGKTKEP---KTKSDGDGDEF 428
                 66699******976666665555554...57788877777 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.2    0.0011         1      17      43 .]     722     747 ..     705     747 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0011
  zf-RING-like  17 esCnvrlHvdCfqhyirthsskkCpkC 43 
                     C   +H dC++  + t ++++Cp C
    CCE31301.1 722 LPCGHEFHADCITPWL-TTRRRTCPIC 747
                   5699************.77777***99 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.1    0.0021       1.8       1      44 [.     705     748 ..     705     750 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0021
   zf-RING_4   1 cplCdeeldetdkdlkpCeCgyqiClfCyhrileeeegrCPaCr 44 
                 c +C ee  +  ++++  +Cg+++  +C +  l++    CP C+
  CCE31301.1 705 CVVCLEEYVDGVSRVMRLPCGHEFHADCITPWLTTRRRTCPICK 748
                 6677777733444455569************************9 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2       4.9   4.4e+03      48      68 ..     400     420 ..     395     423 .. 0.59
   2 ?    8.7   2.2    0.0025       2.2      31      55 ..     769     785 ..     748     797 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.9
     PBP1_TM  48 dddeeeevprk.gkkkkpprkk 68 
                 +d+ ++++++  gk+k+ p+ k
  CCE31301.1 400 NDEKDKVISKTlGKTKE-PKTK 420
                 55666666776555555.6666 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0025
     PBP1_TM  31 rdddyddeyddeedDdddddeeeev 55 
                 r+ddy+d        ddddd+ee+ 
  CCE31301.1 769 REDDYND--------DDDDDDEEVA 785
                 4555555........4444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 6153.63
//
Query:       CCE31302.1  [L=365]
Description: probable aspartate-semialdehyde dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-36  125.2   0.0    4.1e-36  124.8   0.0    1.2  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
    2.9e-30  105.2   0.0    7.8e-30  103.8   0.0    1.7  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
  ------ inclusion threshold ------
      0.032   14.9   0.0      0.075   13.7   0.0    1.7  1  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
      0.077   13.8   0.0       0.14   13.0   0.0    1.4  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
       0.14   12.4   0.0       0.35   11.1   0.0    1.7  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.0   1.1e-39   4.1e-36       3     183 ..     168     345 ..     166     346 .. 0.93

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 1.1e-39
                      HHHHCTT.EEEEEEEEEEEGGGCHHHHHHHHHHHHHHHHHSTTS.CTTTSSHHTTSEESTCSTBTTTTCHCBHHHHHHHHHHHHHCTESC..SE CS
  Semialdhyde_dhC   3 PLldalgelervivatyqavSGaGkkgvreLlkqvaelqrsdeakpgvfgvpiagNlipyidkeedkgepetreelkavaetkkilefte..kv 94 
                      +L +a+g++++v+++t+qavSGaG+                    pgv++++ ++N++p+i++eedk e e r++l+ +++ +  +  +e   v
       CCE31302.1 168 ALQAAFGPITTVSIVTMQAVSGAGY--------------------PGVSSMDMLDNVVPFIQGEEDKLESEARKILGRLNDPQCGFIEQEglRV 241
                      67888********************....................9***********************************999988888899* PP

                      EEEEEEESBSSEEEEEEEEEES....SSHHHHHHHHHHHHCS.........TTEEEEESSHCHHSSHHHHTTC..SSSEEEEEEEEETTCTTEE CS
  Semialdhyde_dhC  95 satcvrVPvlrGhseavtiklk....lkdveveeveellaaa.........pevkvvvneeedrPtpaavagg..tnsvsVGRirkdemgdegl 173
                      satc+rVPvl+Gh+++v+++++    ++++e ++++  + a+         p++++ v +eedrP+p+++++   +++vsVGR+r de+g   +
       CCE31302.1 242 SATCNRVPVLDGHTACVSLRFErrpaPSAEECKAAMRGYVAEaltlgcpsaPDPAIWVFDEEDRPQPRLDRDLgnGYTVSVGRVRGDESGIFDI 335
                      **********************97777777777777777777****************************987789************99999* PP

                      EEEEEEETTT CS
  Semialdhyde_dhC 174 klvvvgDNll 183
                      k++++++N++
       CCE31302.1 336 KFTALSHNTV 345
                      ********98 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.0   2.2e-33   7.8e-30       1     119 [.      11     135 ..      11     137 .. 0.97
   2 ?   -3.0   0.0       2.7   9.7e+03      61      78 ..     327     344 ..     311     349 .. 0.73

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 2.2e-33
                     EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSG......GGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHT CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavk......aleegkdlkvedvdeeelkevdivflalpagvskelapklaea 89 
                     k +++GatG vGq+++ lL++hp+++l++l +ssrsaGkk+++av+      +  + ++l+v+++++ e++++d+vf+ l+++v+ ++++++++a
      CCE31302.1  11 KCGVLGATGSVGQRFILLLAQHPSLKLHALGASSRSAGKKYKDAVRwkqaspMSPSLAELVVRECKASEFQDCDVVFSGLDSDVAGQIEQEFLQA 105
                     579***********************************************99999**************************************** PP

                     TSEEEESSSTTTTSTTSEBE-HHHHGGGGG CS
  Semialdhyde_dh  90 gvkviDlssdfRlkddavyvlpevnreaik 119
                     ++ v+++++++R ++ +++v+p vn ++++
      CCE31302.1 106 EIPVFSNAKNHRRDPLVPLVVPTVNLSHLD 135
                     *************************99986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.7
                     GGGCTT-SEEEE-SCHHH CS
  Semialdhyde_dh  61 eeelkevdivflalpagv 78 
                      +e    di f+al++++
      CCE31302.1 327 GDESGIFDIKFTALSHNT 344
                     556666799999999875 PP

>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.1e-05     0.075       3      36 ..      14      46 ..      12      89 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
                     EESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTH CS
  DXP_reductoisom  3 iLGsTGSIGtqtLdvieenpdkfevvalaagsnv 36
                     +LG+TGS+G+  + +++++p + +++al a+s+ 
       CCE31302.1 14 VLGATGSVGQRFILLLAQHP-SLKLHALGASSRS 46
                     9******************9.8999999885443 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     4e-05      0.14       2      91 ..      11     111 ..      10     112 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4e-05
                   EEEEETT.SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESS.........HHHHHTCT..TESEEEE-S-GGGHHHHHHHHHHTT CS
  GFO_IDH_MocA   2 rvaiiGa.Gkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysd.........leelladp..eidavivatpngtheelakaaleag 86 
                   ++++ Ga G +g++++  l ++ + +++ al  ++ ++ ++  ++ +++  s          ++e +a++  ++d+v+ +  ++   ++++++l+a 
    CCE31302.1  11 KCGVLGAtGSVGQRFILLLAQH-PSLKLHALGASSRSAGKKYKDAVRWKQASPmspslaelvVRECKASEfqDCDVVFSGLDSDVAGQIEQEFLQAE 106
                   89*****9999*****666666.999**************997777777444455677778888888888999************************ PP

                   -EEEE CS
  GFO_IDH_MocA  87 khvll 91 
                   + v+ 
    CCE31302.1 107 IPVFS 111
                   *9995 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.9e-05      0.35       3      38 ..      14      48 ..      12      82 .. 0.79
   2 ?   -3.0   0.0       2.2     8e+03      64      89 ..     248     273 ..     213     287 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.9e-05
                     EE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHH CS
  Sacchrp_dh_NADP  3 iiGa.GsvGqavaellarhfdvdaeitvadrskekle 38
                     ++Ga GsvGq ++ lla+h ++  +++  + s +++ 
       CCE31302.1 14 VLGAtGSVGQRFILLLAQHPSL--KLHALGASSRSAG 48
                     8******************998..6666666665544 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.2
                      HHHHTTSSEEEE-SSGGGHHHHHHHH CS
  Sacchrp_dh_NADP  64 aallkegdlvvnlsppissldvlkaC 89 
                      +++l +++++v+l      ++ ++ C
       CCE31302.1 248 VPVLDGHTACVSLRFERRPAPSAEEC 273
                      34455666666665555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2922.63
//
Query:       CCE31303.1  [L=314]
Description: uncharacterized protein CPUR_05154 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-36  123.2  13.4    2.9e-20   71.8   0.4    3.3  4  PQ-loop          PQ loop repeat
  ------ inclusion threshold ------
        0.1   13.4   1.4        5.8    7.7   0.0    2.7  3  ER_lumen_recept  ER lumen protein retaining receptor


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.6   2.1e-20   1.9e-16       1      59 [.       9      67 ..       9      69 .. 0.95
   2 ?   -2.0   0.0      0.35   3.1e+03      29      43 ..      68      82 ..      68      82 .. 0.78
   3 ?   -1.6   0.4      0.26   2.3e+03       7      17 ..     174     184 ..     169     184 .. 0.78
   4 !   71.8   0.4   3.2e-24   2.9e-20       3      57 ..     217     271 ..     215     274 .. 0.94

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 2.1e-20
     PQ-loop  1 lseilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngfpp 59
                ls i+g+isl+ wl++++PQ++ Nyk  S +GlS+ fl+ wllGd+++l++ +l++  p
  CCE31303.1  9 LSGIFGSISLTAWLCVLLPQLVANYKAESSDGLSMAFLIVWLLGDVCNLVGALLTKLAP 67
                5889*************************************************998765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.35
     PQ-loop 29 SteGlSilflllwll 43
                S+  l  +f++l+++
  CCE31303.1 68 SAIALAAYFCFLDIV 82
                566788999999875 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.26
     PQ-loop   7 yislvlwlvsy 17 
                 ++++++w+vsy
  CCE31303.1 174 IVGFLGWFVSY 184
                 67889999987 PP

  == domain 4  score: 71.8 bits;  conditional E-value: 3.2e-24
     PQ-loop   3 eilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngf 57 
                  +lgy+s++l+l+++iPQi+kNy+ kS+eGlS+lf++l l+G++++ l+l++ ++
  CCE31303.1 217 LALGYVSAILYLCARIPQILKNYREKSCEGLSLLFFMLSLTGNLTYGLSLLAYSQ 271
                 589**********************************************998775 PP

>> ER_lumen_recept  ER lumen protein retaining receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00065       5.8     107     142 ..      23      58 ..       3      63 .. 0.83
   2 ?    3.8   0.0     0.011        96       2      49 ..      38      89 ..      37     108 .. 0.68
   3 ?    3.9   0.1      0.01        90     102     129 ..     224     251 ..     211     299 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00065
  ER_lumen_recept 107 vAilPQlillqktgevesltshyvfalglyRalyll 142
                      + +lPQl+  +k ++ + l   +++++ l  +++l+
       CCE31303.1  23 CVLLPQLVANYKAESSDGLSMAFLIVWLLGDVCNLV 58 
                      5689***********************999888775 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.011
  ER_lumen_recept  2 vaGlSlktqilyalvfltryldl.flylre...eislyntlmkialillsiy 49
                      +GlS+  +i+ +l  +++++   +++l      + +y ++++i+li+ ++y
       CCE31303.1 38 SDGLSMAFLIVWLLGDVCNLVGAlLTKLAPsaiALAAYFCFLDIVLIAQTSY 89
                     689**************99965525777656666666667777776665555 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.01
  ER_lumen_recept 102 iiLesvAilPQlillqktgevesltshy 129
                       iL  +A +PQ++  ++++++e l   +
       CCE31303.1 224 AILYLCARIPQILKNYREKSCEGLSLLF 251
                      5555566666666666666666654433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2528.95
//
Query:       CCE31304.1  [L=304]
Description: probable nuclease S1 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-68  231.7   0.6    1.3e-68  231.5   0.6    1.0  1  S1-P1_nuclease  S1/P1 Nuclease


Domain annotation for each model (and alignments):
>> S1-P1_nuclease  S1/P1 Nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.5   0.6   7.4e-73   1.3e-68       1     252 [.      21     288 ..      21     289 .. 0.92

  Alignments for each domain:
  == domain 1  score: 231.5 bits;  conditional E-value: 7.4e-73
                     --HHHHHHHHHHHHCCS-HHHHHHHHHHCTG.GCTTTCGGGTTHHHHHTT.STTTGGGGGGG-EEE-SC-.HHHHSB-.TT..CT-SHHHHHHHH CS
  S1-P1_nuclease   1 WgkeGHrtvaeiAqklLspkaakavkellke.easedlaqvatwaDeiksatkkyretspwHyidtpdek.ysrdckdaekekkegcvvsaienl 93 
                     Wg+ GH t+a++A++++ +++++ +kell + + +++la+va+waD++++ tk+ r+t+++H+id++d+   s +++ ++++k +gcv+sa++n+
      CCE31304.1  21 WGSLGHITTAYLASHFVANTTEAFFKELLLSdDGDDYLAKVASWADSVRY-TKWGRFTKNFHFIDAHDSPpHSCNVDFQRDCKADGCVISALANY 114
                     ***************************98662569***************.778**************7334445567899************** PP

                     HHHHCCTT.TTTH.HHHHHHHHHHHHHCTSGGGGEECGGHCCTTT-EEEETTEEEEHHHHHHTHHHHHHHCCTSC...CCHHHHHHHHHHHHH.. CS
  S1-P1_nuclease  94 tselkdkkaskaqraealkflvHfvGDiHqPLHtagreedrGGNkikvqfegkktnLHsvWDseiiekiseeksr..lsalkeladaleakik.. 184
                     t++  d++  + +ra+a kf++HfvGD+HqPLH++++  + GGN+i+v ++gk  nLH+vWD++i ek  +  +r  +  ++++a++l+ +i+  
      CCE31304.1 115 TQQSLDSSLPAWRRAQAAKFVIHFVGDLHQPLHNEDV--ALGGNRIHVLWDGKAFNLHHVWDTSIAEKWLGAGRRqpYPMAEKWAKQLAGEIEdg 207
                     *********************************9999..*****************************99977668899**************99 PP

                     ..CCCHHHCC........CHHHHHHHHHHHHHHHHTTS...TTHHCCHCCTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  S1-P1_nuclease 185 ..seevkswe........klsaeawakesnelackvvy...kgaesgetlsdeYyekalpvveeqlakaGvRLAavLnkil 252
                       ++++++w         +++a+aw++e+n+++c+ v+   + a +g++l+ +Y++ka pv+e q+a+aG R+Aa+L+ki+
      CCE31304.1 208 kfADQRDAWVkdldfqnaTETAMAWSREANAYVCTHVFpegPAAIEGQELGGDYFKKAGPVIEVQVARAGFRMAAWLDKIA 288
                     98788888889999*996559*****************77777778888*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2468.00
//
Query:       CCE31305.1  [L=576]
Description: related to major facilitator MirA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-17   62.0  52.4    2.3e-16   59.7  49.1    3.1  2  MFS_1     Major Facilitator Superfamily
    1.5e-06   26.9  18.2    2.8e-06   26.0  18.2    1.4  1  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
      0.015   15.4   1.2      0.015   15.4   1.2    3.1  3  Pox_A14   Poxvirus virion envelope protein A14
        8.6    7.0  10.7        2.1    9.0   5.9    2.6  2  DUF4405   Domain of unknown function (DUF4405)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7  49.1   5.2e-20   2.3e-16       2     352 ..      63     480 ..      62     481 .. 0.89
   2 ?   -1.4   0.1      0.19   8.7e+02      62      81 ..     539     558 ..     530     572 .. 0.55

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 5.2e-20
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlga 99 
                 +l++f++a+ +s+++ + p ++ +++  s++ i  + ++ ++ aa   +pl+ + + + r   + ++++l+ lg ++l+ a  ++ + +++ v+ ++g 
  CCE31305.1  63 WLIYFVNAMRSSLAANLTP-FVLSAFE-SHALIPVVDVVASICAASVYMPLAKVLNLWDRSLGFSCMIALSTLG-MILMAAcRTFEVYAAANVFYSIGF 158
                 899*********9999998.999****.******************************7666************.44442436666************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrkspkeee......... 188
                 ++++ ++ +++ad+++ + rg+a+++ s+ f + a  gp ++  +++  +Wr+ f + aiv+  ++v +  ++l++  ++++r+s++            
  CCE31305.1 159 AGVIFSVDVMTADISTMKSRGLAFAFTSSPFLITAFGGPKAAETIYED-NWRWGFGAWAIVLPAVAVpM--IVLMQMGKKKARESGRLTVadkgvvdgq 254
                 **********************************************55.7***************9953..5554444444444444444566899999 PP

       MFS_1 189 ...............................................................kgtgpaplvpawkallkdpvlwillialllfffgfs 224
                                                                                   +++p+vp w +l++++vl     a++l  ++++
  CCE31305.1 255 rrgfmyyfdefdivgvflllagfvlfllpftiaassedtwrsahiiamlvlgfiliicfalweRMGAKTPFVP-WHLLRARNVLG----ACCLS-ACYQ 347
                 99************************************************************99999999999.********554....33333.2444 PP

       MFS_1 225 g....lltllplylqevlglsglllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalglallavtssavllllvlvliGf.glgfv 317
                 +      +++++ylq v++ s    ag++ +++ +v+    +l+g+l++r+g+ +++l+ a++l +l+ ++l+++  ++ ++ + +++ ++   ++g +
  CCE31305.1 348 IsyycWNSYFTSYLQVVYDVS-ISNAGYIASIFDVVNGLNLFLVGFLIRRTGHfKWILVAAVPLYILGQALLIYFRQPTFPIGYTIMCQIFMAlAGGAM 445
                 44455****************.899999999999999999************9999**********************9999999999996666***** PP

       MFS_1 318 fpsllalasdlappeeagtasglfntagslggalg 352
                     ++ +++++  +  +++++  n++g+lgg lg
  CCE31305.1 446 ILGQQVSVMSVCEHNDVAAVLAMLNLFGNLGGGLG 480
                 ********************************998 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.19
       MFS_1  62 rr.vlllglllfalglllllf 81 
                  r +l++g  +++lg ++++f
  CCE31305.1 539 QRlMLIAGTCVMVLG-VICVF 558
                 333555555555555.44443 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0  18.2   6.3e-10   2.8e-06     117     424 ..     130     443 ..      54     508 .. 0.71

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 6.3e-10
       TRI12 117 lglvgaivgctatkfntllaamtllgva.agpagasplfvgelmsnktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiy.iitsaiavlli 213
                 l  +g i+ +++  f+   aa  +  +  ag   +  ++  ++ + k++ l +   s p ++t+  +p   + +  + +wrw f  + i++ a+av +i
  CCE31305.1 130 LSTLGMILMAACRTFEVYAAANVFYSIGfAGVIFSVDVMTADISTMKSRGLAFAFTSSPFLITAFGGPKAAETI-YEDNWRWGFGAWaIVLPAVAVPMI 227
                 556788888899999999999998887548889999999*************************9999887765.689******88736789******* PP

       TRI12 214 vvwyyppsfaqlhgk......kv...rkre...elakldwigiilvivgvslfllgvswggkpnspwnsakviglissglgslvvfalyevygkpvrpi 300
                 v+       a+  g+       v   ++r     +   d +g++l+ +g  lfll  +     ++ w sa++i ++  g   ++ fal+e +g  + p+
  CCE31305.1 228 VLMQMGKKKARESGRltvadkGVvdgQRRGfmyYFDEFDIVGVFLLLAGFVLFLLPFTIAASSEDTWRSAHIIAMLVLGFILIICFALWERMGA-KTPF 325
                 **9988776665554211111222212333111346789*****************************************************96.68** PP

       TRI12 301 vppalfkdtrgfvcillissimgamnlslviiypqqvvnifgsslknweetawmsatasfgtgagvvvlgslfhlvrhirwqilvgalwltaflgamss 399
                 vp  l++  r ++    +s+       +    +   +  ++  s+ n     ++++   +  g  + ++g l+    h +w ilv a+ l  + g    
  CCE31305.1 326 VPWHLLRA-RNVLGACCLSACYQISYYCWNSYFTSYLQVVYDVSISNA---GYIASIFDVVNGLNLFLVGFLIRRTGHFKW-ILVAAVPLYIL-GQALL 418
                 ****9974.444444455555555566666666665556677777664...555566666667777888888888888888.77888777644.33333 PP

       TRI12 400 vnrdnknaaialsvlsgfvvawaqd 424
                 +   +    i  ++++ + +a a  
  CCE31305.1 419 IYFRQPTFPIGYTIMCQIFMALAGG 443
                 4444445556666666666666554 PP

>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.91   4.1e+03      45      66 ..     120     139 ..      85     151 .. 0.60
   2 ?   15.4   1.2   3.3e-06     0.015      10      67 ..     261     318 ..     256     326 .. 0.82
   3 ?    0.5   0.3      0.15   6.6e+02      14      31 ..     542     559 ..     531     570 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.91
     Pox_A14  45 ralsivsFilgivillglllfs 66 
                 r+l   + i  ++++lg++l++
  CCE31305.1 120 RSLGFSCMI--ALSTLGMILMA 139
                 444444444..35566666654 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 3.3e-06
     Pox_A14  10 yystvliaGiiLLilacifafvdfskststtdkawralsivsF.ilgivillglllfsm 67 
                 y++   i+G+ LL +  ++  + f  + s ++ +wr++ i++  +lg ++++   l++ 
  CCE31305.1 261 YFDEFDIVGVFLLLAGFVLFLLPFTIAAS-SEDTWRSAHIIAMlVLGFILIICFALWER 318
                 7778889*******************999.788*****999853789998877665543 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.15
     Pox_A14  14 vliaGiiLLilacifafv 31 
                 +liaG  +++l +i+ fv
  CCE31305.1 542 MLIAGTCVMVLGVICVFV 559
                 799999999999999997 PP

>> DUF4405  Domain of unknown function (DUF4405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.9   0.00047       2.1       8      60 ..     267     311 ..     267     315 .. 0.84
   2 ?   -3.6   0.1       3.8   1.7e+04       6      22 ..     542     558 ..     541     570 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00047
     DUF4405   8 lsflvlaiSGillsfavlpsgrgaywaflgl...skhqwrdiHeilgllflilvvl 60 
                 +++++l++ G++l+   lp         + +   s ++wr  H+i++l++ +++++
  CCE31305.1 267 IVGVFLLLAGFVLFL--LP---------FTIaasSEDTWRSAHIIAMLVLGFILII 311
                 6899**********5..57.........45567799***********998777765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.8
     DUF4405   6 lllsflvlaiSGillsf 22 
                 +l+++  +++ G++  f
  CCE31305.1 542 MLIAGTCVMVLGVICVF 558
                 56666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4153.29
//
Query:       CCE31306.1  [L=290]
Description: related to enoyl-CoA hydratase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-42  146.1   0.0    3.1e-42  144.6   0.0    1.6  1  ECH_1     Enoyl-CoA hydratase/isomerase
    2.2e-20   73.4   0.0    1.3e-19   70.9   0.0    2.1  2  ECH_2     Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
      0.018   14.8   0.0       0.04   13.8   0.0    1.6  1  ROQ_II    Roquin II domain


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6   0.0   5.2e-46   3.1e-42       6     250 ..      25     287 ..      22     288 .. 0.85

  Alignments for each domain:
  == domain 1  score: 144.6 bits;  conditional E-value: 5.2e-46
                 EEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHCHHHHHHHCCH....HHHH..HHHHHSSSEEEEEE-SE CS
       ECH_1   6 vaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeekakqallkeev....lelw..tklytvpkpviaavnGa 98 
                 ++++ + rP+++Na++ +   El + ++  + ++s+r +v+tG ++aF++G+dlke  e   +  + + ee      + +     ++ +kpviaavnG 
  CCE31306.1  25 IMLVVFSRPNKLNAMTVTAQYELEALFAWYDAEPSLRCAVVTGAGRAFCSGMDLKEWNEIAIRRSQGFAEERpmnpPSGFggLSRRHGKKPVIAAVNGL 123
                 78999***************************************************98876644444443321111333411445789*********** PP

                 EETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGG..........HHHHHHHHH CS
       ECH_1  99 aigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeq..........lleealela 187
                 a+gGGle+    D+++a+++a f+l+e+k G++p+ag  ++lar++G+ +A+e++l+g+ i a ea+ + +++ v +++           ++++ale+a
  CCE31306.1 124 AFGGGLEILANLDLIYASKSATFALSEVKRGVVPNAGSLPRLARTIGRPRAMELALTGRVIPASEAKAWSMINDVTADAAaeddavldrpVVRKALEVA 222
                 ***************************************************************************98743223444444578899**** PP

                 HHHHHSCHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH----- CS
       ECH_1 188 eklaekspaalrqlkealnakle..dalaeqleaeaklfestfskddikeGlqaflEkrkpefed 250
                   +a +sp+++   ++ +    e  +a+ + + +  +  + +   d+ +eGl af+Ekr+p+++d
  CCE31306.1 223 CSIAANSPDSVIISRAGVISGWEdgSAENASRLLCETWNSVLYGGDNHREGLRAFVEKREPRWTD 287
                 ********************99975555566666666666667777889**************97 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   2.1e-23   1.3e-19       3     172 ..      27     199 ..      25     212 .. 0.85
   2 ?   -0.4   0.0      0.11   6.6e+02     254     321 ..     223     289 ..     208     290 .] 0.68

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 2.1e-23
                 EEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHH......H.HHHC-SS-EEEEE CS
       ECH_2   3 vitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYkln......y.liatypkpvvalm 94 
                 ++ + rp++lNa++ +   +l++ +  ++++++ ++ v++gag +afC+G D+++  e a ++++     f+ee  +n           + +kpv+a +
  CCE31306.1  27 LVVFSRPNKLNAMTVTAQYELEALFAWYDAEPSLRCAVVTGAG-RAFCSGMDLKEWNEIAIRRSQG----FAEERPMNppsgfgGlSRRHGKKPVIAAV 120
                 57789************************************99.************9998886544....66666666222222213356799****** PP

                 -BEEETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE- CS
       ECH_2  95 dGivmGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyv 172
                 +G++ GgG+ + ++  +  ++++++fA  E++ G++P+ G    L+r+ g   ++ lalTG+ + +++a a  + + + 
  CCE31306.1 121 NGLAFGGGLEILANLDLIYASKSATFALSEVKRGVVPNAGSLPRLARTIGrPRAMELALTGRVIPASEAKAWSMINDVT 199
                 ***********************************************977467999**********9998877766555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.11
                 HHHHHS-HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHH.SSHHHHHHHHTTS-------SSSS CS
       ECH_2 254 etlkkrsPtslkvtleqlrrgrklsslaevlrmElrlalrllae.kDfveGvrallvdkdkkPkWkpat 321
                  +++++sP s+ ++ + + +g +  s +++ r  ++  +++l   ++  eG ra  v+k ++P+W+ ++
  CCE31306.1 223 CSIAANSPDSVIISRAGVISGWEDGSAENASRLLCETWNSVLYGgDNHREGLRAF-VEK-REPRWTDSK 289
                 5666777777777777777666666566666666666666666536678999996.666.79**98765 PP

>> ROQ_II  Roquin II domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.7e-06      0.04      25      53 ..     252     280 ..     248     283 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.7e-06
      ROQ_II  25 glrlspeqWSalLYgdqdhrshmqSiidk 53 
                   rl  e W ++LYg  +hr  +   ++k
  CCE31306.1 252 ASRLLCETWNSVLYGGDNHREGLRAFVEK 280
                 568999***************99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2320.92
//
Query:       CCE31307.1  [L=1320]
Description: related to multidrug resistance protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-89  300.5  25.5    2.1e-49  168.6   5.9    2.1  2  ABC_membrane  ABC transporter transmembrane region
    5.4e-68  227.8   0.0    1.5e-34  119.4   0.1    2.4  2  ABC_tran      ABC transporter
    3.6e-13   49.5   0.4    0.00022   20.7   0.0    4.6  5  SMC_N         RecF/RecN/SMC N terminal domain
    2.9e-08   33.3   0.2      0.011   15.5   0.0    2.6  2  AAA_29        P-loop containing region of AAA domain
    1.6e-07   31.4   0.6       0.39   10.5   0.0    4.2  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    5.4e-07   30.0   0.1       0.13   12.5   0.0    4.2  3  AAA_22        AAA domain
    9.2e-07   28.0   0.1     0.0065   15.3   0.0    2.7  3  ABC_ATPase    Predicted ATPase of the ABC class
    2.7e-06   27.9   1.9       0.11   12.9   0.1    3.4  2  AAA_16        AAA ATPase domain
    2.7e-05   24.1   0.0       0.29   11.0   0.0    2.4  2  RsgA_GTPase   RsgA GTPase
    2.8e-05   23.5   0.0      0.041   13.2   0.0    2.5  2  Zeta_toxin    Zeta toxin
    4.9e-05   23.1   1.1       0.89    9.2   0.0    3.7  4  AAA_30        AAA domain
     0.0003   20.7   0.1       0.22   11.4   0.0    2.5  2  APS_kinase    Adenylylsulphate kinase
    0.00041   20.5   1.9        0.6   10.4   0.2    3.8  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
    0.00076   19.9   0.1        9.4    6.7   0.0    4.0  3  AAA           ATPase family associated with various cellular 
     0.0013   18.9   0.0        1.9    8.6   0.0    2.9  2  AAA_33        AAA domain
     0.0027   17.3   0.1        5.3    6.6   0.0    3.6  3  AAA_25        AAA domain
     0.0036   17.4   0.3       0.97    9.5   0.0    2.4  2  DUF87         Helicase HerA, central domain
     0.0041   17.1   0.0        2.7    8.0   0.0    2.7  2  AAA_5         AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.013   15.2   0.0       0.78    9.4   0.0    2.2  2  AAA_15        AAA ATPase domain
      0.017   15.6   0.0        3.4    8.1   0.0    2.4  2  AAA_23        AAA domain
       0.02   14.4   0.0      0.037   13.5   0.0    1.4  1  ECH_2         Enoyl-CoA hydratase/isomerase
      0.021   14.4   0.1        4.7    6.7   0.0    2.3  2  AAA_7         P-loop containing dynein motor region
      0.028   13.9   0.0       0.72    9.3   0.0    2.3  2  KdpD          Osmosensitive K+ channel His kinase sensor doma
      0.031   14.8   0.0        6.9    7.2   0.0    2.6  2  AAA_18        AAA domain
      0.031   14.0   0.3        6.7    6.4   0.0    2.6  2  AAA_24        AAA domain
      0.069   13.2   0.1         11    6.2   0.1    2.7  2  MMR_HSR1      50S ribosome-binding GTPase
      0.088   13.2   0.0         27    5.2   0.0    3.2  3  AAA_17        AAA domain
       0.13   12.1   0.1       0.62    9.9   0.1    2.1  1  DUF1652       Protein of unknown function (DUF1652)
       0.17   11.0   0.0        3.6    6.6   0.0    2.2  2  G-alpha       G-protein alpha subunit
       0.18   10.9   0.2         18    4.4   0.0    2.5  2  NB-ARC        NB-ARC domain
       0.34    9.9   1.8        7.1    5.5   0.0    2.7  3  DUF3987       Protein of unknown function (DUF3987)


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.6   5.9   3.7e-52   2.1e-49       2     270 ..      35     318 ..      34     322 .. 0.94
   2 !  137.7  11.7   9.9e-43   5.7e-40       3     272 ..     738    1009 ..     736    1012 .. 0.96

  Alignments for each domain:
  == domain 1  score: 168.6 bits;  conditional E-value: 3.7e-52
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS....TCCHH..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldk....gdpet..........ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkki 84 
                   i ++++a ++gv  p+  +++g+++d+++d+    gd++           +a+n  +l++++l++aqf+l++++  +++  g rl  rlr ++++ +
    CCE31307.1  35 ITGLVSACASGVPFPILGIIFGQLIDDFNDQtcqvGDTSNadqarqaayqSAVNDKILYVVYLAVAQFVLVYIHLVCWSLGGARLAQRLRERYLQEL 131
                   6688999999********************9998844444667899*************************************************** PP

                   HCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  85 lrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakass 181
                   l+ + +ffdt+++Ge+ srl+ d+s +r g++ek+g+++ s++ fv+++iv+f+ +  l+ +l++++p ++ +s   a +++k + + +++ a a s
    CCE31307.1 132 LHKDAAFFDTMPSGEVASRLNGDISAVRAGTSEKVGILLSSISFFVTSYIVAFVKNAELAGILTVLIPAYFTMSLAGAWFIEKHSSRVSDRFAAAAS 228
                   ************************************************************************************************* PP

                   HHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT.SSTHHHHHHHHHHHHHH CS
  ABC_membrane 182 vaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisg.elsvgdlvvflslfail 270
                   +a E+ls++ +V+af++ ++ ++kf+  l+ a++ g+kkaiang++ g ++++++ ++ l +w+G+ ++ ++ + +v+d++v +++  i+
    CCE31307.1 229 IASEALSNVAVVQAFNANDRLETKFTAHLRAARTEGLKKAIANGVQAGLMYFIAYSANGLSFWLGSRMIADNiANDVSDVTVGSVFTVIF 318
                   ***********************************************************************9855566655555554443 PP

  == domain 2  score: 137.7 bits;  conditional E-value: 9.9e-43
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHH. CS
  ABC_membrane    3 liillailagvlsplfplvlgrildtlldkgdpet..ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdt. 94  
                    +++ +a ++g++  + ++++g+ + +l++ ++p++  +  n++ l++++l+l++f+++l++   + +++e+ ++ +r +lf+++++q+++++++ 
    CCE31307.1  738 IALAAASVVGGAFSAEAVIFGHTVGSLTPCQTPDYirSSGNFFGLMFFALALIEFFANLISWVGFGIVSEKSIFNIRVRLFRSLFEQDVQWHQSe 832 
                    55566666777777***************999999************************************************************ PP

                    .SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   95 .nsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEsls 188 
                     +++ +ll  +tnd +++  + g+++g+++   +++++++i+ +++ wk+++v+lai+p+++ +  +  ++l+k+ +k+ +a +k+  +  E++ 
    CCE31307.1  833 dRTPTSLLGYITNDGDQIAGLSGSTIGTILSICINLIAAIIMTLIVAWKIAIVCLAIVPILLGIGLIQLRTLSKFYEKHEEAFSKSVGISVEAVD 927 
                    *********************************************************************************************** PP

                    THHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHH CS
  ABC_membrane  189 girtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfg 272 
                     i+tV ++  e+++l  +   l+e+k+      ++++l  + ++l+g+l++ la+w+G+ ++ sg ++  +  ++++ f++l+ 
    CCE31307.1  928 SIKTVASLSLEDEVLAVYRRTLDEPKREVTAISFSANLWLALQYLAGNLAFGLAFWWGSKQIFSGVYTETQ--FIIVVFSLLVS 1009
                    ***********************************************************************..77777776654 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.1   2.6e-37   1.5e-34       1     137 []     393     585 ..     393     585 .. 0.89
   2 !  106.1   0.0   3.5e-33     2e-30       1     137 []    1094    1246 ..    1094    1246 .. 0.85

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 2.6e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................... 79 
                 l+nvs++l++g+k+a+vG +G+GKSt+++l+++l++p+eG++lldg+dl+e++++++r+ ig ++qe++lf+++ + en                    
  CCE31307.1 393 LQNVSMELQAGKKTALVGFSGSGKSTIAALMLRLYDPAEGRVLLDGHDLREINTREVRSMIGLVQQESRLFDRS-ILENvalglvnsfspdhewlhatl 490
                 79************************************************************************.99999******************* PP

                 ....................................HHHTC...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ....................................xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....................................esdee...iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                                     ++ +e   ++++++kl   e   t+v+  +++LSgGq+qr+a+aral+k+pk+l+lDE+ta
  CCE31307.1 491 lgpqlgevaaevrsgiavteaaghhgaemsaivtmvQKAVElanAAQFIDKLP--EGLGTIVGPTGKQLSGGQRQRIAIARALVKDPKILILDEATA 585
                 **********9999999999999998866666655433333322444444444..36799999999*****************************96 PP

  == domain 2  score: 106.1 bits;  conditional E-value: 3.5e-33
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdee 84  
                  l+ +s+++++g+  ++vG++GaGKSt+++l+ +l+ p +G il+dg d+++++   +r e++ +pq+  lf+++ vr n             e   +
  CCE31307.1 1094 LSGLSIHVRPGQFCGLVGPSGAGKSTIISLVERLYLPSSGAILIDGSDITKKTDITFRDELALVPQDGVLFEGS-VRFNvslgarpgtevsqE---D 1186
                  567999*******************************************************************9.99999******8864330...3 PP

                  .........HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  .........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   85 .........iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                           i++ + kl      dt ++ s++ +SgGqkqr+a+aral++kp+ll+lDEpt+
  CCE31307.1 1187 iiqacklanIHETIMKLPE--GYDTECGASGNRFSGGQKQRLAIARALVRKPRLLILDEPTS 1246
                  2333333223333333333..6699999999*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.2     3e+03      45      68 ..     111     135 ..     108     153 .. 0.74
   2 ?    3.7   0.2     0.064        37      25      41 ..     404     420 ..     393     426 .. 0.79
   3 !   20.7   0.0   3.8e-07   0.00022     135     212 ..     504     628 ..     421     634 .. 0.69
   4 ?    3.1   0.0     0.092        53      25      42 ..    1105    1122 ..    1097    1130 .. 0.87
   5 !   15.7   0.0   1.3e-05    0.0075     118     211 ..    1182    1288 ..    1131    1295 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.2
                 HHHCTT..TTTTTTCHCCCCCC--B CS
                 xxxxxx.xxxxxxxxxxxxxxxxxx RF
       SMC_N  45 lFvLGe.rsakklrseklsdlihks 68 
                 ++ LG  r a+ lr++ l++l+hk 
  CCE31307.1 111 CWSLGGaRLAQRLRERYLQELLHKD 135
                 677865157889***********92 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.064
                 SEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnll 41 
                 + ta+vG  GSGKs + 
  CCE31307.1 404 KKTALVGFSGSGKSTIA 420
                 4699**********986 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 3.8e-07
                 T...................................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHH CS
                 x...................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e...................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvael 182
                 +                                                   +LSgG+++ +a+a       vk   + +lDe  a LD k  +++ + 
  CCE31307.1 504 SgiavteaaghhgaemsaivtmvqkavelanaaqfidklpeglgtivgptgkQLSGGQRQRIAIARA----LVKDPKILILDEATASLDSKSEREILTA 598
                 05555555555555555555555555555555556666666666666666669******98888754....46777799******************** PP

                 HHHHCTTSEEEEE-SSHHHCCC-SCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 183 lkeksknaQfivislreemlekadklvgvt 212
                 +++ s+   +i +++r  +++ adk++ ++
  CCE31307.1 599 IERCSEGRTVISVAHRLSTIQTADKIIVMS 628
                 *************************99775 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.092
                  SEEEEEESTTSSHHHHHH CS
                  xxxxxxxxxxxxxxxxxx RF
       SMC_N   25 sftaivGpNGSGKsnlld 42  
                  +f  +vGp G+GKs ++ 
  CCE31307.1 1105 QFCGLVGPSGAGKSTIIS 1122
                  68889*********9985 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 1.3e-05
                  E-HHHHHHHHHCTT-STT.................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-S CS
                  xxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  118 vtkkevsellesagiske.................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivisl 197 
                  v+++++ +  + a+i+++                  +SgG+k+ +a+a       v++  l +lDe  +aLD++  k + + l+ +s    ++ +++
  CCE31307.1 1182 VSQEDIIQACKLANIHETimklpegydtecgasgnRFSGGQKQRLAIAR----ALVRKPRLLILDEPTSALDAESEKLLQDGLEIASRGITVLAVAH 1274
                  5555555555555555556666666666666666689*****9776654....456777799*********************************** PP

                  SHHHCCC-SCEEEE CS
                  xxxxxxxxxxxxxx RF
       SMC_N  198 reemlekadklvgv 211 
                  r ++++kad ++ +
  CCE31307.1 1275 RLHTIRKADVIYMI 1288
                  *********99977 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.8e-05     0.011      12      39 ..     393     420 ..     389     433 .. 0.78
   2 !   15.0   0.0   2.6e-05     0.015      15      48 ..    1097    1130 ..    1090    1135 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.8e-05
      AAA_29  12 fdghtieidlkgatlltGpsGsGKSTll 39 
                 +++ ++e++    t l+G sGsGKST+ 
  CCE31307.1 393 LQNVSMELQAGKKTALVGFSGSGKSTIA 420
                 5667888885559*************96 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.6e-05
      AAA_29   15 htieidlkgatlltGpsGsGKSTllDAiqalLvp 48  
                   +i++++ +++ l+GpsG+GKST++  +  l +p
  CCE31307.1 1097 LSIHVRPGQFCGLVGPSGAGKSTIISLVERLYLP 1130
                  567777777899************9666666666 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.37   2.1e+02       2      22 ..     406     426 ..     405     461 .. 0.81
   2 !    7.4   0.0     0.006       3.5     236     293 ..     556     609 ..     553     618 .. 0.86
   3 !   10.5   0.0   0.00067      0.39       3      78 ..    1108    1170 ..    1106    1188 .. 0.73
   4 !    6.8   0.0    0.0088       5.1     237     292 ..    1218    1269 ..    1214    1279 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.37
      AAA_21   2 nvliGpNgsGKSnLLdaldll 22 
                 ++l+G  gsGKS++  ++  l
  CCE31307.1 406 TALVGFSGSGKSTIAALMLRL 426
                 799**********98777666 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.006
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvi 293
                 +lS G+++ +a++ al  ++   ++l++DE  ++L+ k  r++l+ ++++s+ g  vi
  CCE31307.1 556 QLSGGQRQRIAIARALVKDP---KILILDEATASLDSKSEREILTAIERCSE-GRTVI 609
                 57888888877777777777...9***************************9.66655 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00067
      AAA_21    3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrl 78  
                  +l+Gp g+GKS+++ + + l               +++g + i+++  ++ ++i f+ e+ +++++gv +++++r+
  CCE31307.1 1108 GLVGPSGAGKSTIISLVERLY-------------LPSSGAILIDGSDITKKTDITFRDELALVPQDGVLFEGSVRF 1170
                  69***************9994.............455555555555555666666666666666666666666665 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0088
      AAA_21  237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv 292 
                  +S G+k+ la++ al r +   +ll++DEp + L+ +  + l + l+++sr g+ v
  CCE31307.1 1218 FSGGQKQRLAIARALVRKP---RLLILDEPTSALDAESEKLLQDGLEIASR-GITV 1269
                  6889999988888898877...************98665555555555555.5555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00023      0.13       8     115 ..     406     602 ..     400     614 .. 0.64
   2 !    8.8   0.0    0.0032       1.8       6      30 ..    1105    1129 ..    1101    1161 .. 0.75
   3 ?   -0.6   0.0       2.5   1.4e+03      81     108 ..    1227    1252 ..    1186    1274 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00023
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee............erpevvfvtlpsstsskdllrellralglelka........................ 70 
                 ++++G sG+GK+t ++ +l+ +d ++                + +ev ++   ++ +s+ + r +l+++ l+l +                        
  CCE31307.1 406 TALVGFSGSGKSTIAALMLRLYDPAE---GrvlldghdlreiNTREVRSMIGLVQQESRLFDRSILENVALGLVNsfspdhewlhatllgpqlgevaae 501
                 689******************97543...2456888888887666666777777778888888888888888877777777777776666666666666 PP

      AAA_22  71 ......................................................erlsseell.ealeqalrarav...ielliiDEaqh.lr..s.ee 107
                                                                       +      l   + ++ + ara    +++li+DEa   l+  s  e
  CCE31307.1 502 vrsgiavteaaghhgaemsaivtmvqkavelanaaqfidklpeglgtivgptgkQ------LSgGQRQRIAIARALvkdPKILILDEATAsLDskSeRE 594
                 6666666666666666666666666666666666677777766666665432221......22122222222222234555777777776666542466 PP

      AAA_22 108 aleeLrsl 115
                 +l+ + ++
  CCE31307.1 595 ILTAIERC 602
                 66666555 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0032
      AAA_22    6 gilvvtGesGtGKTtllrrlleqld 30  
                  +++ ++G+sG+GK+t +  + + + 
  CCE31307.1 1105 QFCGLVGPSGAGKSTIISLVERLYL 1129
                  67779************99988874 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2.5
      AAA_22   81 aleqalraravielliiDEaqh.lrseea 108 
                  a+++al ++ +  lli+DE    l+ +e 
  CCE31307.1 1227 AIARALVRKPR--LLILDEPTSaLD-AES 1252
                  45555555555..******777663.333 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         5   2.9e+03     109     156 ..     390     453 ..     370     473 .. 0.56
   2 !    9.5   0.0   0.00066      0.38     295     351 ..     528     585 ..     518     588 .. 0.90
   3 !   15.3   0.0   1.1e-05    0.0065     298     353 ..    1192    1248 ..    1177    1285 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5
                 SEE--BSSEEE...............--EEEEEEEEE---EETTSE.-HHHHHHHHHTTHHHHH CS
  ABC_ATPase 109 qevlersavel...............sdekielrlrvgLPaegrri.lgkeaiellleelpkiv 156
                 q vl+  ++el               +++   l+lr+  Paegr   +g+  +e+ ++e+ +++
  CCE31307.1 390 QGVLQNVSMELqagkktalvgfsgsgKSTIAALMLRLYDPAEGRVLlDGHDLREINTREVRSMI 453
                 5555555555555555555555554333333455555556666653145555555555555555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00066
                 --EEEE--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS CS
  ABC_ATPase 295 rsvkgvDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDts 351
                 ++v+ ++  +Fi++LPeg  t    + ++ SG   q  +i++al  + k+l++DE t+
  CCE31307.1 528 KAVELANAAQFIDKLPEGLGTIvGPTGKQLSGGQRQRIAIARALVKDPKILILDEATA 585
                 578889999************967778899*************************886 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 1.1e-05
                  EEE--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase  298 kgvDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsAt 353 
                  k ++i   i +LPeg dt+  +s +  SG   q  +i++al ++ +ll++DE tsA 
  CCE31307.1 1192 KLANIHETIMKLPEGYDTEcGASGNRFSGGQKQRLAIARALVRKPRLLILDEPTSAL 1248
                  5679999************44666778****************************95 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   0.00018      0.11      27      86 ..     406     467 ..     391     592 .. 0.61
   2 !   12.3   0.1   0.00028      0.16      25      69 ..    1105    1150 ..    1096    1272 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00018
      AAA_16  27 vllsGesGvGKsslvrellralekdggiflrgkcdql...esa.ipysalaqalareellrqll 86 
                 + l+G sG+GKs+++   lr +  ++g +l    d     +++ ++++ l+q+ +r  l+    
  CCE31307.1 406 TALVGFSGSGKSTIAALMLRLYDPAEGRVLLDGHDLReinTREvRSMIGLVQQESR--LFDRSI 467
                 5799***************9999999888666666663443332333335555522..333222 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00028
      AAA_16   25 elvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipy 69  
                  + + l+G+sG GKs+++  + r +  + g+i++ g     +++i++
  CCE31307.1 1105 QFCGLVGPSGAGKSTIISLVERLYLPSsGAILIDGSDITKKTDITF 1150
                  56779****************9666663577776666655555554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00081      0.47      79     119 ..     382     423 ..     361     452 .. 0.81
   2 !   11.0   0.0   0.00049      0.29      93     118 ..    1097    1123 ..    1074    1138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00081
                  EEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  79 vllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinal 119
                  + + s  ++  l++++ +l+  k ++lvG SG GKSt+   +
   CCE31307.1 382 FAYPSRPEQGVLQNVSMELQAgKKTALVGFSGSGKSTIAALM 423
                  5555666667788899999888***************97655 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00049
                   HHHHCTT.SEEEEECSTTSSHHHHHHH CS
  RsgA_GTPase   93 lkellkd.ktsvlvGqSGvGKStLina 118 
                   l+ +++  +++ lvG+SG+GKSt+i  
   CCE31307.1 1097 LSIHVRPgQFCGLVGPSGAGKSTIISL 1123
                   555555558889************975 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     7e-05     0.041      20      89 ..     407     469 ..     394     474 .. 0.81
   2 !    7.4   0.0     0.004       2.3      21      53 ..    1109    1141 ..    1105    1145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7e-05
  Zeta_toxin  20 llgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPeyeeilkadpkkaseltqkdaselvekllq 89 
                  l+G +G+GKs++a+l+ +  +++++ v ld+ dlRe   +  e     ++++  l+q++++ + +++l+
  CCE31307.1 407 ALVGFSGSGKSTIAALMLRLYDPAEGRVLLDGHDLREINTR--E-----VRSMIGLVQQESRLFDRSILE 469
                 57899*******************************99733..3.....556777777777776666665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.004
  Zeta_toxin   21 lgGqpGAGKselaellkdelerqgnvvrldpDd 53  
                  l+G +GAGKs++++l+++   + ++++ +d+ d
  CCE31307.1 1109 LVGPSGAGKSTIISLVERLYLPSSGAILIDGSD 1141
                  7899*************9988999999999866 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.017        10      20      50 ..     405     435 ..     394     442 .. 0.84
   2 ?    3.9   0.3     0.069        40      47     119 ..     527     608 ..     503     615 .. 0.69
   3 !    9.2   0.0    0.0015      0.89      18      43 ..    1104    1129 ..    1098    1143 .. 0.83
   4 ?   -3.2   0.0       9.7   5.6e+03      83     109 ..    1230    1256 ..    1198    1274 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.017
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrvi 50 
                  ++l+G  G+GK+t+ + + ++++ a+grv+
  CCE31307.1 405 KTALVGFSGSGKSTIAALMLRLYDPAEGRVL 435
                 4789*************99999998877775 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.069
      AAA_30  47 grviglAptgkaAkvLaeelg.ieastiakllkrlk.....grarlepgtllivDEagmv.dtkqlaallkaaek..agakv 119
                 ++ + lA  ++  ++L e+lg i + t ++l   ++     +ra +++ ++li DEa    d+k+ +++l+a+e+  +g +v
  CCE31307.1 527 QKAVELANAAQFIDKLPEGLGtIVGPTGKQLSGGQRqriaiARALVKDPKILILDEATASlDSKSEREILTAIERcsEGRTV 608
                 4556678888888888888884466666666655558899876777888*******97644999999999999884334555 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0015
      AAA_30   18 drvavltGpAGtGKttalkalreawe 43  
                   +++ l+Gp G+GK+t+++ +++++ 
  CCE31307.1 1104 GQFCGLVGPSGAGKSTIISLVERLYL 1129
                  568899*************9988875 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 9.7
      AAA_30   83 rarlepgtllivDEagmvdtkqlaall 109 
                  ra +++ +lli DE   +  ++ ++ll
  CCE31307.1 1230 RALVRKPRLLILDEPTSALDAESEKLL 1256
                  445566699999997777444444444 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00037      0.22       7      43 ..     408     443 ..     403     462 .. 0.86
   2 ?    6.6   0.0     0.012       6.8       7      43 ..    1109    1144 ..    1104    1154 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00037
                 EESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTT CS
  APS_kinase   7 ltGlsgsGKstianalekkLvekgisvylLdGdnvRh 43 
                 l G+sgsGKstia  +  +L +     +lLdG  +R+
  CCE31307.1 408 LVGFSGSGKSTIAALML-RLYDPAEGRVLLDGHDLRE 443
                 78**********97665.7999999999*****9997 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.012
                  EESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTT CS
  APS_kinase    7 ltGlsgsGKstianalekkLvekgisvylLdGdnvRh 43  
                  l G sg+GKsti   +e+ L      ++l+dG  + +
  CCE31307.1 1109 LVGPSGAGKSTIISLVER-LYLPSSGAILIDGSDITK 1144
                  6799********999985.666677788899988765 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.2     0.001       0.6      62      89 ..     573     600 ..     552     601 .. 0.79
   2 ?    6.6   0.1     0.015         9      31      81 ..    1216    1253 ..    1197    1260 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.001
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                 +++++++LDEA ++lD++s +++l ++e
  CCE31307.1 573 KDPKILILDEATASLDSKSEREILTAIE 600
                 5699*****************9998876 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.015
     SbcCD_C   31 gtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesi 81  
                  ++ SGG+kq l   a+a     ++       +++rl++LDE  s lD+es 
  CCE31307.1 1216 NRFSGGQKQRL---AIA----RAL------VRKPRLLILDEPTSALDAESE 1253
                  55666666432...222....222......2359*************9975 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.36   2.1e+02       3      36 ..     408     451 ..     406     473 .. 0.67
   2 ?    5.6   0.1     0.034        20      44     118 ..     561     621 ..     514     629 .. 0.71
   3 ?    6.7   0.0     0.016       9.4       3      38 ..    1109    1159 ..    1107    1285 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.36
                 EESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSS CS
         AAA   3 lyGppGtGKTllakavakel..........gvefleisgsells 36 
                 l+G  G GK+++a  + +            g ++ ei+  e++s
  CCE31307.1 408 LVGFSGSGKSTIAALMLRLYdpaegrvlldGHDLREINTREVRS 451
                 899**********9988875333333333335566666666663 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.034
                 HHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHH CS
         AAA  44 kkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpa 118
                 ++ r  +++a  k +p+il++DE+ a   s+             ++lt++++ ++     +vi +++r ++++ a
  CCE31307.1 561 QRQRIAIARALVK-DPKILILDEATASLDSK----------SEREILTAIERCSE---GRTVISVAHRLSTIQTA 621
                 3444444444444.59*********999998..........57788888888888...35788888887777665 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.016
                  EESSTTSSHHHHHHHHHHHH..THEEEEEETTTCSSS.............S CS
         AAA    3 lyGppGtGKTllakavakel..gvefleisgsellsk.............y 38  
                  l+Gp G GK+++++ v +    ++  + i+gs++++k              
  CCE31307.1 1109 LVGPSGAGKSTIISLVERLYlpSSGAILIDGSDITKKtditfrdelalvpQ 1159
                  89***********99977755557788999999986655555555555550 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0033       1.9       4      21 ..     408     425 ..     406     468 .. 0.78
   2 ?    7.0   0.0      0.01         6       4      19 ..    1109    1124 ..    1107    1164 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0033
      AAA_33   4 lvGlpGsGKstlaerllk 21 
                 lvG +GsGKst a  +l+
  CCE31307.1 408 LVGFSGSGKSTIAALMLR 425
                 79***********98875 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.01
      AAA_33    4 lvGlpGsGKstlaerl 19  
                  lvG++G+GKst +  +
  CCE31307.1 1109 LVGPSGAGKSTIISLV 1124
                  69*********76533 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0091       5.3      30      53 ..     400     423 ..     373     442 .. 0.80
   2 ?    5.6   0.0     0.018        10      30      50 ..    1101    1121 ..    1076    1124 .. 0.81
   3 ?   -0.5   0.0       1.4     8e+02     133     188 ..    1228    1274 ..    1215    1277 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0091
      AAA_25  30 lpagelallaGapgtGKttlaldl 53 
                 l ag+ ++l+G +g+GK+t+a  +
  CCE31307.1 400 LQAGKKTALVGFSGSGKSTIAALM 423
                 589*****************9755 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.018
      AAA_25   30 lpagelallaGapgtGKttla 50  
                  ++ g ++ l+G++g+GK+t+ 
  CCE31307.1 1101 VRPGQFCGLVGPSGAGKSTII 1121
                  456999*************86 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.4
      AAA_25  133 leaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188 
                  +++a+ +  ++rl+++D  ++al+++++      +l+++  +i +  g++vl+v H
  CCE31307.1 1228 IARALVR--KPRLLILDEPTSALDAESE------KLLQDGLEI-ASRGITVLAVAH 1274
                  5666666..4999999999999988665......455555555.355666666665 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0017      0.97      24      59 ..     404     437 ..     395     440 .. 0.78
   2 ?    5.5   0.1     0.028        16      26      59 ..    1107    1138 ..    1104    1140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0017
       DUF87  24 rHlAilgsTGsGKSntvavLleellekkgatililD 59 
                 + +A +g +GsGKS+ +a++l+ l+ ++    ++lD
  CCE31307.1 404 KKTALVGFSGSGKSTIAALMLR-LY-DPAEGRVLLD 437
                 67899*************9996.55.5555555555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.028
       DUF87   26 lAilgsTGsGKSntvavLleellekkgatililD 59  
                  ++ +g +G+GKS+ + +L+e+l+  +++  +++D
  CCE31307.1 1107 CGLVGPSGAGKSTII-SLVERLY-LPSSGAILID 1138
                  688999******876.689****.8999888888 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.018        11       4      24 ..     408     429 ..     405     450 .. 0.87
   2 !    8.0   0.0    0.0046       2.7       4      46 ..    1109    1153 ..    1107    1168 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.018
                 EE--SSSSHHHHHHHGGGGB.S CS
       AAA_5   4 LvGppGtgKselaerlaaal.n 24 
                 LvG +G+gKs++a  +++++  
  CCE31307.1 408 LVGFSGSGKSTIAALMLRLYdP 429
                 9****************99863 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0046
                  EE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B- CS
       AAA_5    4 LvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrre 46  
                  LvGp+G gKs+++  + +++   +    + +++ t+++d++ r e
  CCE31307.1 1109 LVGPSGAGKSTIISLVERLYlpSSGAILIDGSDITKKTDITFRDE 1153
                  9******************99777777788888888888877655 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0013      0.78      14      69 ..     393     445 ..     391     469 .. 0.81
   2 ?    3.6   0.0     0.078        45      26      75 ..    1107    1152 ..    1093    1202 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0013
      AAA_15  14 lkdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleife 69 
                 l++v+++l+    t l+G  +sGKS+i+ ++  + +      +  + ++ +dl++ +
  CCE31307.1 393 LQNVSMELQAGkKTALVGFSGSGKSTIAALMLRLYDPA----EGRVLLDGHDLREIN 445
                 788889998888*****************999888877....666666666666655 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.078
      AAA_15   26 tvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifenisesk 75  
                    l+G+ ++GKS+i+ + + +   +    + +i i+ +d+ ++ +i +  
  CCE31307.1 1107 CGLVGPSGAGKSTIISLVERLYLPS----SGAILIDGSDITKKTDITFRD 1152
                  569*************999998888....677888888887777766655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.062        36      21      36 ..     405     420 ..     391     454 .. 0.79
   2 ?    8.1   0.0    0.0058       3.4      24      36 ..    1109    1121 ..    1094    1125 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.062
      AAA_23  21 ltlItGpNGaGKTTil 36 
                  t+++G  G+GK+Ti 
  CCE31307.1 405 KTALVGFSGSGKSTIA 420
                 6899**********96 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0058
      AAA_23   24 ItGpNGaGKTTil 36  
                  ++Gp GaGK+Ti+
  CCE31307.1 1109 LVGPSGAGKSTII 1121
                  89**********8 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.3e-05     0.037     137     208 ..     537     608 ..     533     637 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.3e-05
                 HHHHCSSTTHHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT........--------..... CS
       ECH_2 137 yfLsrlpgelGlylalTGarlkgadalaaglathyvpseklealeeaLaelessdeeaveevleelaeeaee 208
                  f+ +lp+ lG+ ++ TG++l+g +   + +a  +v++ k+  l ea a+l+s++e+++ +++e+++e  + 
  CCE31307.1 537 QFIDKLPEGLGTIVGPTGKQLSGGQRQRIAIARALVKDPKILILDEATASLDSKSEREILTAIERCSEGRTV 608
                 6899***********************************************999999999999888765554 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0082       4.7      29      58 ..     399     428 ..     393     435 .. 0.84
   2 ?    5.1   0.0     0.025        15      27      51 ..    1098    1122 ..    1085    1133 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0082
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkld 58 
                  l+++k++ lvG +G+GK++i+  +l+ +d
  CCE31307.1 399 ELQAGKKTALVGFSGSGKSTIAALMLRLYD 428
                 57899****************998888766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
       AAA_7   27 elllknkkpvllvGptGtGKtviik 51  
                  + +++ ++ + lvGp+G GK++ii+
  CCE31307.1 1098 SIHVRPGQFCGLVGPSGAGKSTIIS 1122
                  566777777889***********97 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.24   1.4e+02      59      99 ..     551     591 ..     508     611 .. 0.75
   2 ?    9.3   0.0    0.0012      0.72      67     137 ..    1220    1288 ..    1209    1300 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.24
        KdpD  59 prkeveykgkeleeldldailarkpevvlvDelahtnapgs 99 
                  ++  + +g + +++ +  +l ++p+++++De   +  ++s
  CCE31307.1 551 GPTGKQLSGGQRQRIAIARALVKDPKILILDEATASLDSKS 591
                 4445567788899999****************887654444 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0012
        KdpD   67 gkeleeldldailarkpevvlvDelahtnapgsrhekryqdveelLeagidVittvnvqhleslndvveki 137 
                  g + ++l +  +l rkp+++++De   t a +++ ek  qd  e+ ++gi V++  +  h    +dv+  i
  CCE31307.1 1220 GGQKQRLAIARALVRKPRLLILDEP--TSALDAESEKLLQDGLEIASRGITVLAVAHRLHTIRKADVIYMI 1288
                  667889999***************6..56679999*****************9988777766666666655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.078        45       3      17 ..     408     422 ..     407     465 .. 0.86
   2 ?    7.2   0.0     0.012       6.9       3      21 ..    1109    1127 ..    1108    1155 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.078
      AAA_18   3 ltGtpGvGKttlake 17 
                 l G +G+GK+t+a  
  CCE31307.1 408 LVGFSGSGKSTIAAL 422
                 789*********965 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.012
      AAA_18    3 ltGtpGvGKttlakeLskr 21  
                  l G++G+GK+t+   ++++
  CCE31307.1 1109 LVGPSGAGKSTIISLVERL 1127
                  89***********999765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.012       6.7       2      23 ..     403     426 ..     402     457 .. 0.85
   2 ?    4.9   0.1     0.032        18       6      22 ..    1108    1124 ..    1104    1147 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
      AAA_24   2 klkiliyGpsgiGKTtlakel..g 23 
                 ++k +++G sg+GK+t+a+ +   
  CCE31307.1 403 GKKTALVGFSGSGKSTIAALMlrL 426
                 6899**************988553 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.032
      AAA_24    6 liyGpsgiGKTtlakel 22  
                   ++Gpsg+GK+t+++  
  CCE31307.1 1108 GLVGPSGAGKSTIISLV 1124
                  699*********99876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.084        49       2      19 ..     406     423 ..     405     446 .. 0.87
   2 ?    6.2   0.1     0.018        11       2      17 ..    1107    1122 ..    1106    1145 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.084
                 EEEEESTTSSHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinal 19 
                  a+vG + +GKSt+   +
  CCE31307.1 406 TALVGFSGSGKSTIAALM 423
                 699**********97665 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.018
                  EEEEESTTSSHHHHHH CS
    MMR_HSR1    2 vaivGrpNvGKStLin 17  
                  +++vG + +GKSt+i+
  CCE31307.1 1107 CGLVGPSGAGKSTIIS 1122
                  689**********996 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.12        68       1      19 [.     409     427 ..     409     461 .. 0.86
   2 ?    5.2   0.0     0.046        27       1      21 [.    1110    1129 ..    1110    1144 .. 0.83
   3 ?   -1.4   0.0       4.9   2.8e+03      70     102 ..    1158    1190 ..    1136    1199 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.12
                 EE-TTSSHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky 19 
                 +G  GsGK+t+++ + + y
  CCE31307.1 409 VGFSGSGKSTIAALMLRLY 427
                 699********98777655 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.046
                  EE-TTSSHHHHHHHHHHHHTE CS
      AAA_17    1 lGgPGsGKgtqceklvekygf 21  
                  +G+ G+GK+t++  lve++ +
  CCE31307.1 1110 VGPSGAGKSTII-SLVERLYL 1129
                  79**********.77777755 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 4.9
                  HSSEEEEEE-SEEEETTEEEESSHHHHHHHH.. CS
      AAA_17   70 kkkgvlvdghprikeqagfldglpkevleelkp 102 
                   ++gvl++g  r++ + g+++g ++  ++ ++ 
  CCE31307.1 1158 PQDGVLFEGSVRFNVSLGARPGTEVSQEDIIQA 1190
                  5789******************99987776655 PP

>> DUF1652  Protein of unknown function (DUF1652)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1    0.0011      0.62      25      64 ..     421     457 ..     418     459 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
     DUF1652  25 smtvrlfdpasgevdLlvtGiplrelnssrdisrLieelr 64 
                  +++rl+dpa+g+v  l++G +lre+n+ r++  +i  ++
  CCE31307.1 421 ALMLRLYDPAEGRV--LLDGHDLREINT-REVRSMIGLVQ 457
                 5889**********..899*******98.67777776655 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0063       3.6      25      51 ..     405     439 ..     387     493 .. 0.78
   2 ?    1.7   0.0       0.2   1.2e+02      28      50 ..    1109    1131 ..    1108    1150 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0063
                 EEEEEESTTSSHHHHHHHHHHHCS--........- CS
     G-alpha  25 kllllGqseSGKsTilkqlkllykkg........f 51 
                 k  l+G s+SGKsTi   + +ly+++        +
  CCE31307.1 405 KTALVGFSGSGKSTIAALMLRLYDPAegrvlldgH 439
                 6789*******************987556555542 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.2
                  EEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha   28 llGqseSGKsTilkqlkllykkg 50  
                  l+G s+ GKsTi+  +++ly ++
  CCE31307.1 1109 LVGPSGAGKSTIISLVERLYLPS 1131
                  79***************999765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.031        18      24      42 ..     407     425 ..     391     433 .. 0.80
   2 ?    3.7   0.0     0.052        30      22      39 ..    1106    1123 ..    1097    1128 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.031
                 EEEESTTSSHHHHHHHHCC CS
      NB-ARC  24 alvGmgGvGKttlakqiln 42 
                 alvG  G+GK+t+a+ +l+
  CCE31307.1 407 ALVGFSGSGKSTIAALMLR 425
                 79***********987665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.052
                  EEEEEESTTSSHHHHHHH CS
      NB-ARC   22 vvalvGmgGvGKttlakq 39  
                  + +lvG  G GK+t+++ 
  CCE31307.1 1106 FCGLVGPSGAGKSTIISL 1123
                  789************875 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.012       7.1      39      65 ..     406     432 ..     403     447 .. 0.91
   2 ?   -3.0   0.5       4.9   2.8e+03       2      19 ..     730     747 ..     730     754 .. 0.84
   3 ?    2.6   0.0     0.097        56      35      59 ..    1103    1127 ..    1095    1134 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.012
     DUF3987  39 tlvvapsGerKSpvdklvlrpleeiea 65 
                 t+ v+ sG++KS+++ l+lr+  ++e 
  CCE31307.1 406 TALVGFSGSGKSTIAALMLRLYDPAEG 432
                 6789*****************999985 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.9
     DUF3987   2 appdllalsaltalsaal 19 
                 +p++++al al+a+s++ 
  CCE31307.1 730 RPHAIIALIALAAASVVG 747
                 5899********999875 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.097
     DUF3987   35 lnLytlvvapsGerKSpvdklvlrp 59  
                  +  ++  v+psG +KS++ +lv r+
  CCE31307.1 1103 PGQFCGLVGPSGAGKSTIISLVERL 1127
                  5568999***********9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.45
# Mc/sec: 8795.39
//
Query:       CCE31308.1  [L=2097]
Description: related to AM-toxin synthetase (AMT) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-73  245.7   0.0    1.6e-68  231.2   0.0    2.3  2  AMP-binding   AMP-binding enzyme
    3.2e-64  217.3   0.0    3.5e-32  111.7   0.0    2.8  3  Condensation  Condensation domain
    2.3e-23   82.3   0.5    8.2e-11   42.1   0.1    2.9  2  PP-binding    Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.2   0.0   2.7e-72   1.6e-68       3     423 .]     228     633 ..     226     633 .. 0.86
   2 !   12.3   0.0   7.9e-06     0.047     392     422 ..    1383    1413 ..    1313    1414 .. 0.75

  Alignments for each domain:
  == domain 1  score: 231.2 bits;  conditional E-value: 2.7e-72
                  HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEE CS
  AMP-binding   3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvlia 100
                   qa+k+p k a+ +   +  ++Y+e++  ++ lA +L   Gv  gd V ++ ++s   +va+l+++kaGa+ v ++p+ + ++ + + e+++ak+++ 
   CCE31308.1 228 NQARKHPTKQAICS--WDGDFSYEEVETFSTLLATHLVGVGVLVGDIVPLCFEKSKWTTVAVLGVMKAGAAFVLMDPSQPLQRRQLMAEEVKAKFIV- 322
                  699*********77..7889******************99*********************************************************. PP

                  TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSC CS
  AMP-binding 101 tvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfk 198
                   +++++ ++   +a+     +++iv+++d ++ + ++k ++ ++       + + ++pd+++yii+TSG+TGkPKGV++ h  +++++ +   +t+ +
   CCE31308.1 323 -TSDTNGPSGPLIAP----EAQTIVVSDDTMQ-SMTAKYCQAPSTI-----KLPFVSPDSTLYIIFTSGSTGKPKGVIIGHSVYTSSALAR--STEIG 407
                  .77766333333333....2345555545544.4445555544433.....44579*************************9999988873..34466 PP

                  CTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EB CS
  AMP-binding 199 lkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggepls 296
                   +++++vl + ++a+++++  ++l +ll+G+++++++  +++  + + +++++l+v++ + +P+v++ l +   ++        +sl  + +gge++s
   CCE31308.1 408 YTDSSRVLDFTSYAFDVSI-DSMLSTLLRGGCLCIPSDQDRM--NDISGAMRRLGVNMANMTPSVARIL-D---PD------IIPSLNSLGIGGEACS 492
                  77899*************7.***************9977773..3478*****************9988.3...23......5678999889****** PP

                  HHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE... CS
  AMP-binding 297 pellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafds... 391
                  +  +  + +++  +v+ gYG++E+t+ +t ++++   k   s G +  ++ + +  +++ ++vp g +Gell+ gp v +gYl++pe+t+ af+    
   CCE31308.1 493 AGDIAIWGQHT--RVVVGYGPAECTVGCT-VNPNAAGKPYVSMGAAKGCTIWLVHPDNHDQLVPVGAVGELLIEGPIVGQGYLGDPEKTEAAFIRdpv 587
                  ****9999987..59*************9.666777778889****8888888887778***********************************7799 PP

                  ...........T.CCEEEEEEEEEEETTSE..EEEEEECCCEEEET CS
  AMP-binding 392 ...........e.grwlrTGDlgrldedGy..leivgRkkdliklr 423
                               gr+++TGDl+r+d+dG+  + +vgRk+ ++klr
   CCE31308.1 588 wlvsgygdvpgRrGRLYKTGDLVRYDPDGEngFIFVGRKDSQVKLR 633
                  *********873578*************96679***********96 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 7.9e-06
                   TCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding  392 egrwlrTGDlgrldedGyleivgRkkdlikl 422 
                   +gr+++TGDl+++ +d +l +vg k d+i +
   CCE31308.1 1383 HGRLYKTGDLVKYSDDLRLIFVGKKNDMIQC 1413
                   368**********989*************75 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0   5.9e-36   3.5e-32       2     456 ..     881    1302 ..     880    1303 .. 0.82
   2 ?   -3.8   0.0      0.64   3.8e+03      51      76 ..    1392    1416 ..    1391    1425 .. 0.81
   3 !  102.5   0.0   3.5e-33   2.1e-29       2     344 ..    1689    2006 ..    1688    2085 .. 0.85

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 5.9e-36
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    +d+yp  p+Q     ++ ++++++ay+ q v+++  +     l+ a++++i+   +LRt+++e e+  ++Qv+++e++ ++     +   +++  
    CCE31308.1  881 EDIYPCAPMQ--EIHMAFYHRSKEAYVAQRVVEIPDAATAHKLKAAWDTVIRDCSILRTRIVEFEKHGFLQVVTNEAP-NW-----Q--YRDS-- 963 
                    799*******..66667778889****************************************99*********8887.44.....2..3333.. PP

                    HHHHHHHHHHHTC--SCCCS-SEEEEEEE..SSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSH CS
  Condensation   97 eaieefaqkdlqepfdLekgpLfraalfk..iaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqylesk 189 
                      ++ f+ +d+q+p+ ++ +pL r+ +++   + ++++++++ HH + D++S+++++   ++++      +e+  ++  ++k +++     l+  
    CCE31308.1  964 --LSDFLVEDKQRPMPVN-SPLSRFTMVRdvFQGEKHYFVWTAHHAVYDAWSTELIVDHVIQAF------NEVAVKRLAEFKHFIQF----LQRP 1045
                    ..56788889******96.6999999998555789*****************************......66666677779989887....8889 PP

                    HHHHHHHHHHHHHH.......S.---B.SS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESS CS
  Condensation  190 dlekeeaYWseqlegel.pvlq.Lpkd.karpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgR 281 
                    ++e ++++W +ql+g   p+   Lp++ +++ ++ +++              ++ + ++ +++t  +v+ aa++l+ s+yt +dd+v+g ++ gR
    CCE31308.1 1046 EREMSKSFWLKQLDGATgPQFPaLPSRsYIPEPDAQLE---RL--------IAVDRPCR-NDITDSTVMRAAWALVASQYTMNDDVVFGETFTGR 1128
                    999***********943144444555533333433333...22........23455554.678889***************************** PP

                    TTCSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSE CS
  Condensation  282 eseikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlsel 376 
                      +i +i+++ G  + t+P+r+++++  t   ++++++++  +   h+ y+ +++++ ++  +  +    ++  ++++  + + ++ +  +  ++
    CCE31308.1 1129 SLPIPGIDQIEGPILATVPVRVRIDRTATVHGFLQSLQDEGATRAAHDHYGIQNIRRLSADAQV-AC--EVSMGLVIQPAPADVDDGQHGYVPAF 1220
                    ***************************************998888**********999996664.34..46777777777777444444444444 PP

                    EECEE...E.....SSEEEE..EEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----HHHHHHH CS
  Condensation  377 klsvssveaeeeskydlsle..asetngkltikieYntslFdeetierflerlkelleqviehpeqklselkllsdaekekL 456 
                      +    ea +   y l l   +++ +g++++  ++ + l +e ++ r+l++l+ ++ q+ + p+  +++++ ls ++ e+L
    CCE31308.1 1221 VAGDAALEALHFNTYPLMLAccLQPGGGGFRVLASFDSRLVSETQMHRVLTQLESAVTQLCQYPDRYVKDISCLSRDDLEEL 1302
                    44433333455666666665116679************************************************99887766 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.64
                    HHHH-SSCCEEEEE..TTEEEEEE-T CS
  Condensation   51 lierhdaLRtvfleeengepvQvile 76  
                    l+++ d LR++f+ + +++++Q++  
    CCE31308.1 1392 LVKYSDDLRLIFVGK-KNDMIQCNGR 1416
                    78899*******877.999***9864 PP

  == domain 3  score: 102.5 bits;  conditional E-value: 3.5e-33
                    EEEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHH CS
  Condensation    2 qdeyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseee 96  
                    +d++p+++ Q+r      +   +++ ++  +l++++++d  r+ +++q l++ h++LRtvf+ +++g+ +Qv+l++ +v++   +     e++ +
    CCE31308.1 1689 EDVLPVTDTQERDVKSTIYR--PRSSVQYNMLHMDQSIDMARVVDSFQYLVSLHPILRTVFIPHKDGTLLQVVLQALTVSVTEHNCP--PEEDLD 1779
                    78999999998876666655..5556788899*************************************************888888..666666 PP

                    HHHHHHHHHHHTC--SCCCS..-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSH CS
  Condensation   97 eaieefaqkdlqepfdLekg..pLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqylesk 189 
                    + + ++a++d++ +   + g      + l +  +++  l+l++ H   DGvSl+ ll++l+  Y   ++++  p+ +   +++y ++     + +
    CCE31308.1 1780 QFARTLAEQDIEVDTSFQYGqsFVQLFVLRQDGKEEQSLMLRMSHAQYDGVSLPELLKQLHMHY---LQESVSPSAP---FANYLQH-----MTT 1863
                    7777777777555544444430444455555678899***************************...4444434433...6666666.....222 PP

                    HHHHHHHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTC CS
  Condensation  190 dlekeeaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRese 284 
                       k+ +YW++ql+g     +L    ++pa+  ++  ++  ++   ++++++   ++ +vt  ++l a ++ lL k  +++d+ +  ++sgR+  
    CCE31308.1 1864 LEDKHISYWKKQLAG----SSLSHM-IEPANPATS--TT--RF---FTKAVNVSGRSPDVTFATLLTASWATLLAKHLSTTDVTFAGIVSGRNVD 1946
                    335799*********....678888.888888888..33..33...5688999999**************************************8 PP

                    STCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS CS
  Condensation  285 ikdiermvGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqr 344 
                    + +ie+++G     +P+ri+ +++ t  +l++ v++  l+   h   ++ ++ kd++++ 
    CCE31308.1 1947 MPGIETVMGPCYQYMPVRIKFQASWTVKDLLEHVRDVYLEGSAHATLGFSRIAKDCANWD 2006
                    88******************************************************9876 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   3.8e-13   2.3e-09       3      66 ..     776     838 ..     775     839 .. 0.95
   2 !   42.1   0.1   1.4e-14   8.2e-11       2      66 ..    1577    1640 ..    1577    1641 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 3.8e-13
  PP-binding   3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66 
                 l+++++++l++++++i++++++f lG+DS+la++l+ a++++ g +++++++f  p l ++a+ 
  CCE31308.1 776 LQSIWSKLLNLEADQIHAEANFFMLGGDSILAMKLVPAMRDA-GYDLTVAQVFVSPALHDMARE 838
                 789***************************************.**********99999999876 PP

  == domain 2  score: 42.1 bits;  conditional E-value: 1.4e-14
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66  
                  klr+l+a+ l +++e i+ d+++f lG+DS+la+++++al+ e g+ ++++d+f    l+++a +
  CCE31308.1 1577 KLRSLWARFLSMDEEKITRDDNFFRLGGDSILAMRIVSALRLE-GLVLTVADMFRSMKLGDMASA 1640
                  69*****************************************.**********99999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2097 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.08u 0.30s 00:00:01.38 Elapsed: 00:00:00.46
# Mc/sec: 13673.18
//
Query:       CCE31309.1  [L=450]
Description: related to aerobactin siderophore biosynthesis protein iucB [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-44  150.2   3.2    4.8e-44  149.6   3.2    1.3  1  Acetyltransf_8  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.6   3.2   2.7e-48   4.8e-44       4     144 ..     269     410 ..     267     411 .. 0.95

  Alignments for each domain:
  == domain 1  score: 149.6 bits;  conditional E-value: 2.7e-48
                     GGHHHHHHHCTSCCCHHHH-----HHHHHHHHHHHC.STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHHHCTTTCHH CS
  Acetyltransf_8   4 aDlellhrWmnrprvaewweeagtleevrellakldadphsepliglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeaeargkgltt 98 
                     ++l+l+hrW+n+prva+ w e+g+l+++r++la+l+adph+ +++g+++++p++yfeiYwaked+++ +y a ++drG H l+ge ++rg +++ 
      CCE31309.1 269 QHLDLFHRWQNDPRVAQGWRESGSLDHHRAYLADLHADPHVITVLGSFNDVPFAYFEIYWAKEDRMGMHYAAGDFDRGRHSLVGEDAFRGTHRVM 363
                     79********************************************************************************************* PP

                     HHHHHHHHHHHCCT.T--EEEE--BTT-HHHHHHHHHTT-EEEEEEE CS
  Acetyltransf_8  99 allralvhylfadp.rtrrvvvEPdvrNerairllekaGfekekevd 144
                     a++++++hy+f+d+ rt++vv+EP+ + ++++ +    G ++ + +d
      CCE31309.1 364 AWWPSVMHYIFLDDhRTENVVGEPRLTGAKVLMYEYMFGLHQDQWID 410
                     ***********7555****************9999888888777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3485.92
//
Query:       CCE31310.1  [L=55]
Description: uncharacterized protein CPUR_05161 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 411.36
//
Query:       CCE31311.1  [L=602]
Description: uncharacterized protein CPUR_05162 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.18   11.9   1.3        6.9    6.8   0.1    2.5  2  OTT_1508_deam  OTT_1508-like deaminase


Domain annotation for each model (and alignments):
>> OTT_1508_deam  OTT_1508-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1   0.00039       6.9      26      60 ..     269     297 ..     240     299 .. 0.75
   2 ?    3.4   0.1    0.0045        80      38      61 ..     461     482 ..     458     484 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00039
  OTT_1508_deam  26 gcSKpaCylCelylrahgkatlkvreshgklydkW 60 
                     +SK++C+ C ++ +  +        s ++ ++ W
     CCE31311.1 269 SVSKKLCWSCPVWYKKPP------DPSAEQYWPPW 297
                    58********99987543......45555556555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0045
  OTT_1508_deam  38 ylrahgkatlkvreshgklydkWr 61 
                    +l+  +  ++++++sh+ ly  W+
     CCE31311.1 461 FLEVQS--HASCSGSHELLYAGWK 482
                    443322..3356***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4601.47
//
Query:       CCE31312.1  [L=600]
Description: uncharacterized protein CPUR_05163 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4546.92
//
Query:       CCE31313.1  [L=689]
Description: uncharacterized protein CPUR_05164 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 5100.07
//
Query:       CCE31314.1  [L=597]
Description: related to alpha-mannosidase IC (MNSIC) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.8e-168  559.8   0.0   5.5e-168  559.6   0.0    1.0  1  Glyco_hydro_47  Glycosyl hydrolase family 47
  ------ inclusion threshold ------
      0.037   14.0   0.4       0.67   10.0   0.3    2.4  2  DUF236          DUF236 repeat


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  559.6   0.0  6.2e-172  5.5e-168       2     458 .]     124     593 ..     123     593 .. 0.97

  Alignments for each domain:
  == domain 1  score: 559.6 bits;  conditional E-value: 6.2e-172
                     HHHHHHHHHHHCTTSSEEETTTTEEE-SS.SS-CCHHHHHHHHHHCCHHHHHHHHHHHHHHC----S.SS.EEEHHHHHHHHHHHHHHHHHHH.S CS
  Glyco_hydro_47   2 fkhswegYkkyAwghDelrPlskkgrdtfgglgatlvDsLdtllimglkeefeeaveavekkidfdtsdskevsvFEttIRyLGGLlsaydlsek 96 
                      k+s+++Y+++Aw++Del+P+s++++++fgg++atlvD+Ldtl+im+l++ef+ea +av   id++ +     ++FEttIR LGGLl+aydls  
      CCE31314.1 124 CKRSYDAYRTHAWMKDELKPVSGGFKNPFGGWAATLVDALDTLWIMDLRDEFREAAKAVT-AIDWSDTGDGAANLFETTIRHLGGLLGAYDLS-- 215
                     579*********************************************************.*****9999999********************.. PP

                     -HHHHHHHHHHHHHHHHGGGSSTTS---SEEETTT--EE-.STCGCEEEHHHHCSSHHHHHHHHHHHT-CHHHHHHHCCHHHHHCHCC.HHHTTB CS
  Glyco_hydro_47  97 kedvllekAveladrLlpAFdtpsglpvarvnlkkrkaskkerassesvlAelgslslEftrLsqlTgdkkYedlaervtkaleelqektklpgl 191
                     ++  ll+kAvel+++L++AFdtp++lp   +n ++++++ k  a +++ +A  +sl +EftrLsq+Tgd+kY+d+++rvt+ l+++q+ t lpg+
      CCE31314.1 216 GDAALLNKAVELGEMLYHAFDTPNNLPGFWLNYDEARRG-KLVAGTNDPSASPASLCVEFTRLSQITGDSKYYDATDRVTRFLQRTQNDTLLPGM 309
                     *********************************666654.4677777888*************************************99****** PP

                     -BSEEETTT--EESTEE-SSTTTHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHH.TEEE-TTT..--EEE-EECTT.CTS.EE-EEEGGGG CS
  Glyco_hydro_47 192 vpikidastgkfvaekislgargDSyYEYllKqylllggeeeqyrkmyeealdaikkhllfrpskkkeddllfvgevtst.eegklspeidhLsc 285
                     +pi +d++++++++++++lga++DS+YEYl+K+++llgg +++y+++y+ a+da+ ++llfrp++++++d+lf+g++++t ++gkl pe +hL+c
      CCE31314.1 310 WPIALDLRHETIRDTTFTLGALADSLYEYLPKMHALLGGVDPTYEQLYRGAMDAVTQNLLFRPMVPDQRDILFSGDHRATrSSGKLVPESQHLTC 404
                     ****************************************************************************99996699*********** PP

                     HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS..........S-ECTSSSSEEE-...........GGG--B----H CS
  Glyco_hydro_47 286 FlgGllalgakllekeedlelAkkltegcvkayeatktglmPEifevkpces.....aeecewneekkdealk..........riedrkyllRPE 365
                     F+gG+++lg++l++++++++++++l++gc++aye ++tg+mPEif++ pc       + +c+w+e++++++               d++y lRPE
      CCE31314.1 405 FAGGMFGLGGRLFDIPQHVSVGERLARGCAWAYEVFPTGIMPEIFRLIPCGGvdspqEGSCSWDEAAWQKEQVadrplpkgfaDARDPQYQLRPE 499
                     **************************************************98888888999**998887766689********99********** PP

                     HHHHHHHHHHHH--THHHHHHHHHHHHHHHHCEETTEE--ECETTSS.S-EE-S-B-HHHHHTHHHHHHHHC-S-TTT-TTTEEE-TTS-EEE- CS
  Glyco_hydro_47 366 aiESlfylYritgdekyrevgwemfealekatktesgysaledVtke.epekeDemeSFwlaEtlKYlYLlFsdedvlsldeyVfnTeAHplkr 458
                     aiESlf+lYrit ++++++++wemf+a+  at+te++y+a++dVt+e +++k D+meSFwlaEtlKY+YL+Fs++d++sldeyV+nTeAHplkr
      CCE31314.1 500 AIESLFVLYRITAKRELQDMAWEMFQAILGATETEFAYAAISDVTTEgKTKKVDSMESFWLAETLKYFYLIFSPPDLVSLDEYVLNTEAHPLKR 593
                     *********************************************999999*****************************************96 PP

>> DUF236  DUF236 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.046   4.1e+02       9      15 ..     257     263 ..     253     263 .. 0.94
   2 ?   10.0   0.3   7.5e-05      0.67       7      18 ..     484     495 ..     478     495 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.046
      DUF236   9 iAdtyDP 15 
                 +A+t+DP
  CCE31314.1 257 VAGTNDP 263
                 7*****9 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 7.5e-05
      DUF236   7 ggiAdtyDPNYQ 18 
                 +g+Ad+ DP+YQ
  CCE31314.1 484 KGFADARDPQYQ 495
                 89*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4548.72
//
Query:       CCE31315.1  [L=391]
Description: uncharacterized protein CPUR_05166 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-78  262.0   2.1    4.8e-78  261.6   2.1    1.1  1  INSIG     Insulin-induced protein (INSIG)


Domain annotation for each model (and alignments):
>> INSIG  Insulin-induced protein (INSIG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.6   2.1   2.7e-82   4.8e-78       1     212 []     164     379 ..     164     379 .. 0.92

  Alignments for each domain:
  == domain 1  score: 261.6 bits;  conditional E-value: 2.7e-82
       INSIG   1 lrallLfvlGvvygvlvtrlheerkl...lvkke..ksssswrylvfwGlagvalGlllpwlDrlweekfaeeeeeeeeekeeekaaseadwalvvrsi 94 
                 lr++lL vlG++ygv+vtrlh+e+++   l++++  k+ s+w+yl fwG+ gv+lG+llpw+D+lw ++f + +e+   e++ + aa+ +dwalv+r++
  CCE31315.1 164 LRGVLLCVLGLGYGVIVTRLHSEHNHlprLLDDSimKTGSDWKYLGFWGAGGVVLGSLLPWFDTLWASAFDRGSEK-VVEDGARGAAPGTDWALVMRAV 261
                 699*********************99876333337799****************************9999988877.57889999************** PP

       INSIG  95 gafvGiafAirklpwastlqvsltlalvnpfLWyliDrskpGfllsaavgllgtavllglnpdlvpaPsaaasaaaaaaaaeealgg.asqeslevaiw 192
                 gafvGi+fAirkl+wastlqvs +lalvnp+LW+liDrskpGf+lsa+vgl+g+avll+ln d+  aP+ +as +  ++ +  +l g a +e++e+a++
  CCE31315.1 262 GAFVGILFAIRKLAWASTLQVSAALALVNPLLWWLIDRSKPGFVLSAVVGLTGSAVLLSLNGDVGGAPHVQASLSGWEE-EPFVLLGlAGHEAIETAMY 359
                 **********************************************************************996554444.45667777*********** PP

       INSIG 193 llsvLFcscvcfGniGRrLa 212
                 +lsvLFcsc+cfGniGRrLa
  CCE31315.1 360 MLSVLFCSCLCFGNIGRRLA 379
                 *******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3174.02
//
Query:       CCE31316.1  [L=672]
Description: uncharacterized protein CPUR_05167 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-27   94.4   0.0    2.8e-26   92.7   0.0    1.8  1  LON_substr_bdg   ATP-dependent protease La (LON) substrate-bi
    1.7e-13   50.2  23.7      1e-10   41.3  12.7    2.7  2  zf-C3HC4_2       Zinc finger, C3HC4 type (RING finger)
    5.9e-12   45.5  22.3    1.4e-06   28.3   9.7    2.8  2  zf-C3HC4_4       zinc finger of C3HC4-type, RING
    1.2e-10   41.1  21.6    2.2e-07   30.6   9.1    2.6  2  zf-C3HC4_3       Zinc finger, C3HC4 type (RING finger)
    3.5e-09   36.4  22.5    2.1e-06   27.5  11.3    2.7  2  zf-C3HC4         Zinc finger, C3HC4 type (RING finger)
    8.8e-09   35.3  33.9    3.6e-06   26.9   8.3    3.6  3  zf-RING_UBOX     RING-type zinc-finger
    4.5e-08   32.9  26.2    3.5e-05   23.7  12.2    2.7  2  zf-RING_5        zinc-RING finger domain
    8.7e-08   32.4  29.4    1.6e-06   28.3  13.0    2.9  2  zf-RING_2        Ring finger domain
    5.5e-05   22.9  22.5    0.00015   21.6   9.8    2.9  2  Prok-RING_4      Prokaryotic RING finger family 4
    0.00066   19.3   5.2    0.00066   19.3   5.2    2.8  3  zf-P11           P-11 zinc finger
     0.0026   17.5   7.1     0.0026   17.5   7.1    3.8  3  zf-RING_4        RING/Ubox like zinc-binding domain
  ------ inclusion threshold ------
      0.051   13.8   0.2        2.1    8.6   0.0    2.5  2  U-box            U-box domain
      0.097   12.2   3.0          7    6.3   0.1    2.6  2  NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur
        1.1    9.2  13.1        2.4    8.1   4.3    2.4  2  zf-RING_6        zf-RING of BARD1-type protein
        1.4    9.3   7.1        3.7    8.0   7.1    1.7  1  PBP1_TM          Transmembrane domain of transglycosylase PBP
        3.6    7.8  21.3      0.061   13.5   6.4    2.7  2  zf-RING_10       zinc RING finger of MSL2


Domain annotation for each model (and alignments):
>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.0   2.5e-29   2.8e-26       2     206 ..     375     664 ..     374     666 .. 0.85

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 2.5e-29
  LON_substr_bdg   2 lpllpldnkvlfPgitlpltvsrpksiaaierlldkdkpyigvflvkesqkdaideesiselysvGtvarIvqilrlddgrikvvlegleRvkik 96 
                     +pl+++  ++ fP +++ l+v++p+++ +i+r+l+ +k  +g++l   ++  +   ++ + ++++Gt+ rI+  +  +dgr+ v + gl+R+++ 
      CCE31316.1 375 MPLFVC--TLAFPAMPTFLHVFEPRYRLMIRRALEGNKT-FGMVLP--KRPRD---RDDQHFHPCGTLLRIIDAQFYPDGRSLVETVGLTRFRVL 461
                     688999..899*************************987.******..77777...567************************************ PP

  LON_substr_bdg  97 klekekeegylvaeveiiedd.......................................................................... 117
                     +  +   +gy+va++e+i+d+                                                                          
      CCE31316.1 462 RYGE--LDGYTVAKTERIDDVsleeeeaieaaeatgrahdhenftpltttasstststtatavtccetlehdhdaaqsanshanaplegtattta 554
                     **77..9***********8889*******999999999998888888888888888888888888888888888888888888888888888888 PP

  LON_substr_bdg 118 ........................s.epedsdslqkelkalvqeiiekikkslarellkllleielllkyedlenpyr.Ladlvaailpfsneek 186
                                                +e ++  +++l+++  e++++++     +++  +l    l  y + ++ ++ + +++a++lp+   ek
      CCE31316.1 555 tdshnmnpsphgdpmqtpphhtgsVtASELHTMSTQALMRFATEFVTRMR-----SKSVPWLTERMLAIYGECPHDPAlFPWWLASMLPVRDLEK 644
                     88888888888888777776655413333333333467777777888888.....899999999999999999999998**************** PP

  LON_substr_bdg 187 qelLeeldvedRlkkvlelL 206
                     ++lL++ +v++Rlk++  ++
      CCE31316.1 645 YRLLATSSVRERLKICCLWI 664
                     ****************9887 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   3.2     3e-05     0.033       1      29 [.     100     127 ..     100     133 .. 0.92
   2 !   41.3  12.7   9.2e-14     1e-10       2      40 .]     285     322 ..     284     322 .. 0.98

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3e-05
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilr 29 
                 +C +C   + +p v+ pCg + C++Ci +
  CCE31316.1 100 QCRLCHKPFRNP-VTLPCGQSLCKSCIPE 127
                 7***********.999**********965 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 9.2e-14
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekneCPlC 40 
                 C++C++++ dp  +t CgH+fC+ C++r L+++ +CP+C
  CCE31316.1 285 CQVCYAFFHDP-FTTGCGHTFCRPCLHRILDHSHRCPIC 322
                 ***********.9************************** PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   4.7   9.2e-08    0.0001       1      29 [.     101     129 ..     101     150 .. 0.88
   2 !   28.3   9.7   1.3e-09   1.4e-06       1      42 []     285     322 ..     285     323 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 9.2e-08
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslq 29 
                 C+ C + + +Pv+l+CG s C sCi +  
  CCE31316.1 101 CRLCHKPFRNPVTLPCGQSLCKSCIPETH 129
                 *************************8765 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 1.3e-09
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeqllCplC 42 
                 C +C +++++P +  CGh+fC  C+ ++  ++    ++Cp C
  CCE31316.1 285 CQVCYAFFHDPFTTGCGHTFCRPCLHRILDHS----HRCPIC 322
                 9**************************99887....779999 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   4.5   8.9e-06      0.01       4      33 ..     100     128 ..      98     153 .. 0.90
   2 !   30.6   9.1   1.9e-10   2.2e-07       3      46 ..     283     325 ..     281     328 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.9e-06
                 B-TTTSSSBS-EEETTEEEEEE-HHHHHHH CS
  zf-C3HC4_3   4 eCviClerprnvvllpCgHlvlCeeCaekl 33 
                 +C +C++  rn v lpCg   lC++C  + 
  CCE31316.1 100 QCRLCHKPFRNPVTLPCGQS-LCKSCIPET 128
                 7******************9.*****8765 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 1.9e-10
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekllkrkkkCpiCrrp 46 
                   C++C+    + +   CgH+ +C  C+ ++l+++++CpiCrr 
  CCE31316.1 283 MDCQVCYAFFHDPFTTGCGHT-FCRPCLHRILDHSHRCPICRRV 325
                 67*******************.********************96 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   3.4   3.2e-05     0.036       1      27 [.     101     126 ..     101     136 .. 0.93
   2 !   27.5  11.3   1.9e-09   2.1e-06       1      41 []     285     322 ..     285     322 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.2e-05
                 -TTT-S--SS-E.E-TTS--B-CHHHH CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCir 27 
                 C +C + + +p+ +l+C+ s+C++Ci 
  CCE31316.1 101 CRLCHKPFRNPV-TLPCGQSLCKSCIP 126
                 ************.************96 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 1.9e-09
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 C++C   + +p  ++ C+H+fC++C+ +il+   +  CP+C
  CCE31316.1 285 CQVCYAFFHDPF-TTGCGHTFCRPCLHRILD--HSHRCPIC 322
                 ************.******************..6666**** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   7.3   5.5e-06    0.0061       1      39 []     101     149 ..     101     149 .. 0.73
   2 !   26.9   8.3   3.2e-09   3.6e-06       1      25 [.     285     309 ..     285     318 .. 0.83
   3 ?    3.2   2.5     0.081        91       1      16 [.     319     337 ..     319     337 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.5e-06
  zf-RING_UBOX   1 CpIClelftdPlv.lpCGHtFCreCl......w....elskslegafkCP 39 
                   C  C  +f +P v lpCG ++C++C+            + +++ + f+CP
    CCE31316.1 101 CRLCHKPFRNP-VtLPCGQSLCKSCIpethvrAsityPSVPDRLQGFRCP 149
                   999********.746***********765544144455566666666666 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 3.2e-09
  zf-RING_UBOX   1 CpIClelftdPlv.lpCGHtFCreCl 25 
                   C +C+  f+dP + ++CGHtFCr+Cl
    CCE31316.1 285 CQVCYAFFHDP-FtTGCGHTFCRPCL 309
                   ***********.735*********** PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.081
  zf-RING_UBOX   1 CpIClelft.dPlv.l.pC 16 
                   CpIC+ ++  +Pl+ + pC
    CCE31316.1 319 CPICRRVLAtNPLLnPqPC 337
                   *****97777885555567 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   5.9   2.1e-05     0.024       2      42 ..     101     153 ..     100     155 .. 0.86
   2 !   23.7  12.2   3.1e-08   3.5e-05       2      44 .]     285     324 ..     284     324 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-05
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll.............ekeavCpi..C 42 
                 C  C++++   +++++++Cg ++C++C+ +                + ++Cp+  C
  CCE31316.1 101 CRLCHKPF---RNPVTLPCGQSLCKSCIPETHvrasitypsvpdrLQGFRCPFdeC 153
                 99******...*****************9999888888888888878888887555 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 3.1e-08
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkllekeavCpiCrk 44 
                 C++C+  +   +++++t CgH+fC  Cl++ l  +++CpiCr+
  CCE31316.1 285 CQVCYAFF---HDPFTTGCGHTFCRPCLHRILDHSHRCPICRR 324
                 ********...99****************************95 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   8.4    0.0015       1.7       2      42 ..     100     150 ..      99     162 .. 0.82
   2 !   28.3  13.0   1.4e-09   1.6e-06       2      44 .]     284     323 ..     283     323 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0015
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreCl.erwlrssst............CPl 42 
                 +C +C +++    ++++lpCg + +++C+ e+++r s+t            CP+
  CCE31316.1 100 QCRLCHKPFR---NPVTLPCGQSLCKSCIpETHVRASITypsvpdrlqgfrCPF 150
                 7*****9994...566678**********5446888888777777777777776 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 1.4e-09
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCPlCr 44 
                 +C +C+  ++++ +   + CgH+f+r Cl r+l +s++CP+Cr
  CCE31316.1 284 DCQVCYAFFHDPFT---TGCGHTFCRPCLHRILDHSHRCPICR 323
                 6****977754333...34***********************9 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   4.7    0.0079       8.9       1      28 [.     101     128 ..     101     156 .. 0.90
   2 !   21.6   9.8   1.3e-07   0.00015       1      40 [.     285     326 ..     285     331 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0079
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdsk 28 
                  C lC +  ++++  pCg  +Ck+C  ++
   CCE31316.1 101 CRLCHKPFRNPVTLPCGQSLCKSCIPET 128
                  99**********************9876 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 1.3e-07
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdsk.dls.sCPlCqrri 40 
                  C +C    +++    CgH +C+ C+    d+s +CP+C+r +
   CCE31316.1 285 CQVCYAFFHDPFTTGCGHTFCRPCLHRIlDHShRCPICRRVL 326
                  99999999******************9988888******876 PP

>> zf-P11  P-11 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3       1.5   1.7e+03      37      45 ..     100     108 ..      98     115 .. 0.82
   2 ?   -0.9   0.1       1.2   1.3e+03       1       8 [.     117     124 ..     117     129 .. 0.76
   3 !   19.3   5.2   5.8e-07   0.00066       4      47 ..     284     328 ..     282     330 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.5
                 BETTTSSB- CS
      zf-P11  37 rCpiCkkPL 45 
                 +C +C+kP 
  CCE31316.1 100 QCRLCHKPF 108
                 599999985 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
                 -SSSBTTT CS
      zf-P11   1 GplsCksC 8  
                 G+  CksC
  CCE31316.1 117 GQSLCKSC 124
                 66789999 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 5.8e-07
                 SBTTTS.S--SSEEE-SSSEEEHHHHHHHHHHSSBETTTSSB--- CS
      zf-P11   4 sCksCW.fkdksLveCsdHYLClrClqllLsvserCpiCkkPLPt 47 
                  C+ C+ f ++   +   H  C+ Cl+ +L  s rCpiC+  L t
  CCE31316.1 284 DCQVCYaFFHDPFTTGCGHTFCRPCLHRILDHSHRCPICRRVLAT 328
                 699998455677888889**********************99987 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   2.9       9.1     1e+04      19      29 ..     115     125 ..     101     150 .. 0.75
   2 !   17.5   7.1   2.3e-06    0.0026      20      45 ..     300     324 ..     285     326 .. 0.93
   3 ?    1.4   0.0      0.25   2.8e+02       9      18 ..     422     431 ..     416     437 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9.1
   zf-RING_4  19 eCgyqiClfCy 29 
                 +Cg  +C  C 
  CCE31316.1 115 PCGQSLCKSCI 125
                 57778888875 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 2.3e-06
   zf-RING_4  20 CgyqiClfCyhrileeeegrCPaCre 45 
                 Cg+ +C+ C+hril +++ rCP Cr+
  CCE31316.1 300 CGHTFCRPCLHRIL-DHSHRCPICRR 324
                 **************.57********7 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.25
   zf-RING_4   9 detdkdlkpC 18 
                 d +d++++pC
  CCE31316.1 422 DRDDQHFHPC 431
                 999******* PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.16   1.8e+02       5      33 ..      99     127 ..      96     142 .. 0.81
   2 ?    8.6   0.0    0.0019       2.1       5      54 ..     283     331 ..     281     336 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.16
                 GB-TTT-SB-SSEEEETTTEEEEHHHHHH CS
       U-box   5 fldpitlelmkdPvilpsgvvvdrstiek 33 
                 f + +    ++ Pv lp g+++ +s i +
  CCE31316.1  99 FQCRLCHKPFRNPVTLPCGQSLCKSCIPE 127
                 7888889999*********9999888854 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0019
                 GB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB--GGGS CS
       U-box   5 fldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPftrepltqdql 54 
                   +++ +  + dP  +  g+++ r  +++ l++ ++ +P+ r +l+ + l
  CCE31316.1 283 MDCQVCYAFFHDPFTTGCGHTFCRPCLHRILDH-SHRCPICRRVLATNPL 331
                 56899999*************************.*******999987655 PP

>> NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0062         7       9      19 ..     278     288 ..     276     290 .. 0.92
   2 ?    5.5   0.5     0.011        12      10      21 ..     313     324 ..     311     325 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0062
  NADH-G_4Fe-4S_3   9 LanHpldCltC 19 
                      La H +dC +C
       CCE31316.1 278 LARHEMDCQVC 288
                      89********* PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.011
  NADH-G_4Fe-4S_3  10 anHpldCltCdk 21 
                       +H + C++C +
       CCE31316.1 313 LDHSHRCPICRR 324
                      58********86 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   1.5      0.01        11       5      37 ..      96     127 ..      92     136 .. 0.88
   2 ?    8.1   4.3    0.0021       2.4       8      46 ..     283     322 ..     272     327 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.01
   zf-RING_6   5 ekllrcsrctdilrepvclggcehifcsncisd 37 
                  +l++c  c   +r+pv l  c   +c  ci +
  CCE31316.1  96 VRLFQCRLCHKPFRNPVTLP-CGQSLCKSCIPE 127
                 5799**************95.99999****976 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0021
   zf-RING_6   8 lrcsrctdilrepvclggcehifcsncisdcfg..sgcpvc 46 
                 + c  c   + +p    gc h fc  c+   +     cp+c
  CCE31316.1 283 MDCQVCYAFFHDPFT-TGCGHTFCRPCLHRILDhsHRCPIC 322
                 45999999*****86.68*********99987521579999 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.1    0.0033       3.7      27      58 ..      36      73 ..      22      99 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0033
     PBP1_TM 27 rrrrrdddydd......eyddeedDdddddeeeevprk 58
                r    dddydd      +y ++ +D dd+d +++    
  CCE31316.1 36 RFESVDDDYDDfqdfdyDYGYDMEDMDDEDTNNDNNNN 73
                445569*****999955555555565554444443222 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   2.9     0.093     1e+02       7      32 ..     101     127 ..      98     134 .. 0.79
   2 ?   13.5   6.4   5.5e-05     0.061       2      45 ..     284     324 ..     283     329 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.093
  zf-RING_10   7 ckLLvdPl.epkekeCqHyvCrlCvgk 32 
                 c+L ++P+ +p +  C+ ++C++C+ +
  CCE31316.1 101 CRLCHKPFrNPVTLPCGQSLCKSCIPE 127
                 677777773478889*********865 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.5e-05
  zf-RING_10   2 sCvvCckLLvdPlepkekeCqHyvCrlCvgkkkklkpsCsqCkd 45 
                  C vC    +dP++     C+H  Cr C+ +      +C+ C+ 
  CCE31316.1 284 DCQVCYAFFHDPFTT---GCGHTFCRPCLHRILDHSHRCPICRR 324
                 6***********987...9***********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4611.84
//
Query:       CCE31317.1  [L=678]
Description: uncharacterized protein CPUR_05168 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2147  (0.11975); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                       154  (0.00858944); expected 17.9 (0.001)
Passed Fwd filter:                        69  (0.00384851); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.72u 0.35s 00:00:02.06 Elapsed: 00:00:00.57
# Mc/sec: 3554.01
//
Query:       CCE31318.1  [L=237]
Description: uncharacterized protein CPUR_05169 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1847.28
//
Query:       CCE31319.1  [L=176]
Description: related to PRY1-strong similarity to the plant PR-1 class of pathogen related proteins [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-23   81.4   9.4    1.8e-22   80.5   9.4    1.4  1  CAP       Cysteine-rich secretory protein family


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   9.4   9.8e-27   1.8e-22       1     126 []      33     149 ..      33     149 .. 0.95

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 9.8e-27
                 HHHHHHHHHHTT----EE-HHHHHHHHHHHHHHHHH.T---S-GGG--HHHHHHTT-TEEEEEES--CCCHHHHHHTSHH..............HHHHH CS
         CAP   1 leahNeyRaaaglppLkwdatLekaAqdhardcaashsdsssspeggdllkyaenagkeniaaaseaaedavdsWysepgtynkgketegs.ighftnl 98 
                 l+ hN++R+++ ++pL+wd++L++a+q++a++c    ++s++s     ++  ++++             ++v+ W  e++ yn+++ + +  +ghft++
  CCE31319.1  33 LASHNYFRTQHSANPLTWDNALAQASQTWANTC----NFSHDSAGEDLAFRTSFKYW-----------GEFVNMWGGERTQYNYDQPKFSEaTGHFTQV 116
                 567******************************....99999998888888888888...........******************************* PP

                 T-SS--EEEEEEEEBTTS-E.......EEEEEE CS
         CAP  99 lwpkstkvGcavatcgngsf.....tfivvcny 126
                 +w++++ vGca+a+cg  +      +++vvc+y
  CCE31319.1 117 VWKNTKTVGCAWAYCGTSGGagkalGYYVVCKY 149
                 ****************9999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1295.40
//
Query:       CCE31320.1  [L=116]
Description: uncharacterized protein CPUR_05171 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 842.21
//
Query:       CCE31321.1  [L=263]
Description: uncharacterized protein CPUR_05172 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-42  145.2   0.0    2.6e-42  144.9   0.0    1.1  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.0   1.4e-46   2.6e-42       3     185 ..      27     241 ..      25     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 1.4e-46
                  HHHHHHHHHHTTSSCTTBCEEEEEETSTTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEEC...............ECSSSTB-TTHHHHHHHHHH-T CS
  Aldolase_II   3 laeasrllarrglvegtgGniSvrvpeedsflitpsgvdfeeltaedlvvvdldsgevveg...............kekggkpssetplHlaiykarp 85 
                  + +++ +++++g+v+gtgG  S+r + +d+++i+psgv++e ++  d++v++l  ++                   +   +kps++tpl+la++++ +
   CCE31321.1  27 IPSLCAKFWTLGWVTGTGGGCSIR-Q-DDRVYIAPSGVQKELMKNTDIYVLSLTAQQEAAAaaattsqslqrtylrSPPCLKPSQCTPLFLAAFTR-R 121
                  6789********************.4.69***********************95443331234555666777888866789**************6.6 PP

                  T-SEEEEE--HHHHHHHTCC..............STSCHCC....SSHHHHC.HSS......SEEEEES-SSTTCHHHHHHHHHHHH.H.S-SEEEET CS
  Aldolase_II  86 daravvHtHspaavalsala..............gkeglpp....ltqeaaklllg......devpvipyaapgteelgealaealk.e.dakavllr 157
                  +a++++HtHs++av++++l+              ++e+++     ++  +     +       ++pvi++++++++++ e l++a++ + d+ avl+r
   CCE31321.1 122 NAGCCIHTHSQWAVLVTLLLeqqggpenkvfainNIEQIKGfgrgMHKSG-----NlgyhdtLRIPVIENTPHEEDLT-EYLEAAMEaYpDTYAVLVR 213
                  *****************777999998888887773333333222222222.....144567999********886665.********647999***** PP

                  TTEEEEEESSHHHHHHHHHHHHHHHHHH CS
  Aldolase_II 158 nHGlltvGetleeAvalaetleeaaeiq 185
                  +HG++++Ge++++A++++e l+++++++
   CCE31321.1 214 RHGVYVWGENVHKAKTMCESLDYLFQLA 241
                  *************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1904.97
//
Query:       CCE31322.1  [L=461]
Description: uncharacterized protein CPUR_05173 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-14   52.6   0.5    8.9e-14   51.2   0.1    1.9  2  Sec20     Sec20


Domain annotation for each model (and alignments):
>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.21   3.8e+03      38      54 ..      10      26 ..       2      31 .. 0.47
   2 !   51.2   0.1     5e-18   8.9e-14       3      92 .]     186     275 ..     184     275 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.21
       Sec20 38 lekleeeykqvedvlsr 54
                l++l+e  +q+++++ r
  CCE31322.1 10 LTALQETTTQLRELIDR 26
                34444444444444443 PP

  == domain 2  score: 51.2 bits;  conditional E-value: 5e-18
       Sec20   3 akqiTeslraisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflalglflacvvyvvkkRi 92 
                 ++++T +lr+ + l+++e  +Se + ++l +s+  l +l+e y +++++l  s++l+ +l r++k+d   +  al ++la+  +++++Ri
  CCE31322.1 186 SNNVTSALRRTHDLIAAELFRSEYAHQTLTESSAALRELDESYSSLDSMLASSRDLLGTLLRSQKSDTWYLQTALYMLLATGAWLLFRRI 275
                 689**************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1150  (0.0641419); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3205.89
//
Query:       CCE31323.1  [L=97]
Description: probable ribosomal protein YmL44, mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-20   71.3   0.3    8.2e-20   70.7   0.3    1.3  1  MRP_L53   39S ribosomal protein L53/MRP-L53
  ------ inclusion threshold ------
      0.072   13.3   0.4        4.5    7.4   0.1    2.0  2  MRP-L20   Mitochondrial ribosomal protein subunit L20


Domain annotation for each model (and alignments):
>> MRP_L53  39S ribosomal protein L53/MRP-L53
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.3   9.2e-24   8.2e-20       1      53 []      13      63 ..      13      63 .. 1.00

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 9.2e-24
     MRP_L53  1 FnPFspnaksaRlFLsllskppaarnpgckiktkvlpdastseptvkVtFkDG 53
                FnPFs +ak+aRlFL++l  pp+ar++g++++t +lp+++t+++++kV FkDG
  CCE31323.1 13 FNPFSVCAKPARLFLTYL--PPNARASGTSVETILLPRNTTEPSSLKVDFKDG 63
                9*****************..********************************9 PP

>> MRP-L20  Mitochondrial ribosomal protein subunit L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0005       4.5      19      52 ..      20      52 ..       4      66 .. 0.81
   2 ?    4.7   0.0    0.0033        30     114     136 ..      68      90 ..      62      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0005
     MRP-L20 19 lkpeesfgliynPpssapsvshtPtkFLPksdpr 52
                 kp+  f l y Pp++ +s+++ +t  LP++ ++
  CCE31323.1 20 AKPARLF-LTYLPPNARASGTSVETILLPRNTTE 52
                4666666.9********************99765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0033
     MRP-L20 114 Fgcsklfvsmvteapkekkkeve 136
                 F+cs+  ++m++e  + + ++ +
  CCE31323.1  68 FNCSRIPINMLVEEVERHCRALQ 90 
                 ************98887766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 776.94
//
Query:       CCE31324.1  [L=373]
Description: probable inorganic pyrophosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-58  194.7   0.2    1.2e-57  194.2   0.2    1.2  1  Pyrophosphatase  Inorganic pyrophosphatase


Domain annotation for each model (and alignments):
>> Pyrophosphatase  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.2   0.2   6.5e-62   1.2e-57       1     159 [.     131     312 ..     131     313 .. 0.97

  Alignments for each domain:
  == domain 1  score: 194.2 bits;  conditional E-value: 6.5e-62
                      EEEEE-TTCSEEEEEETTT...........TEEEEEEE-SSSB-BSSEEEEETT--BT.......CCBEETSSSEEEEEESSS---TTEEEEEE CS
  Pyrophosphatase   1 vvvEiprgsnaKyeidkee...........gklrldrvlftskgypanYGfipqTled.......telkGDgDPlDvlvlgeeplspgevvevk 76 
                      +vvEipr++naK+ei kee           gklr++r++f++kgy +nYG++pqT+ed       t++kGD+DPlDv+++ge   ++g+v++vk
       CCE31324.1 131 MVVEIPRWTNAKLEICKEEllnpikqdikkGKLRYVRNCFPHKGYLWNYGAFPQTWEDpnvthpeTKAKGDNDPLDVCEIGELVGYTGQVKQVK 224
                      8********************************************************************************9999********* PP

                      EEEEEEEEETTEEEEEEEEEETTSGGGTT-SSGGG....STHHHHHHHHHHHHHTTTTSCCT-SE.EEE.EEEEHHHHHHHHHHHHHHH CS
  Pyrophosphatase  77 vlGvlamiDegetDdKiiavpvkdprlkkindied....lpgllleeiehfFetykdlegkkknv.kve.ewkdkeeAekvieeahery 159
                      vlGv+a++De+etD+K+i+++v+dp   k+ndied    lpgll ++++++F+ yk+++gk +n+ +++ e+k+k++A++v++e++e++
       CCE31324.1 225 VLGVMALLDEEETDWKVIVIDVNDPIAPKLNDIEDverhLPGLL-RATNEWFRIYKIPDGKPENQfAFTgECKNKAYAMDVVRECAEAW 312
                      *************************889*******999888888.***************966888***9*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2976.31
//
Query:       CCE31325.1  [L=284]
Description: uncharacterized protein CPUR_05176 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-107  358.5   5.1   2.7e-107  358.2   5.1    1.1  1  Pil1      Eisosome component PIL1


Domain annotation for each model (and alignments):
>> Pil1  Eisosome component PIL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.2   5.1  1.5e-111  2.7e-107      24     264 ..      11     244 ..       1     245 [. 0.93

  Alignments for each domain:
  == domain 1  score: 358.2 bits;  conditional E-value: 1.5e-111
        Pil1  24 pksstkskrlfslkslrsslrkqaaasfsPelarrLakLikseknlvraheaaarerksiakqlseWGedt.dddvsDvsDklgvllselgeledayad 121
                 ++ss ++   fs++slr++  +q      Pel+r+L kLikse+nl++aheaa+rer++ia+qlseWGe+t d++vsD+sDk+gv+lse+geled+ya+
  CCE31325.1  11 KSSSGAQLPSFSFNSLRGQ--TQ------PELSRKLFKLIKSENNLINAHEAAGRERIQIATQLSEWGENTaDEAVSDISDKVGVVLSEIGELEDTYAH 101
                 2223333237888888888..66......****************************************999*************************** PP

        Pil1 122 rldqsRatlKsirniEasvqpsRdkkekladeiaklkakepqserlvvlEqeLvraeaeslvaeaqlsnitReklkeaytaefdaliEraeKlallary 220
                 +ld+sR +lKsirn+E+svqpsR++k+k+ad+iaklk+kep+s+rlvvlEqeLvraeae+lvaeaql+nitR+klkeay++ef a+iEraeK+++la++
  CCE31325.1 102 ALDDSRGRLKSIRNTEKSVQPSRHGKAKIADDIAKLKMKEPESARLVVLEQELVRAEAENLVAEAQLTNITRQKLKEAYDTEFLATIERAEKQIILAKH 200
                 *************************************************************************************************** PP

        Pil1 221 gkrLlellddspvtpGetrpaYdgaeatrqiladaedaLrewrl 264
                 g+rLl l+dd+pv+pG+tr++Y++a+++rqil+d+ed+Lr+wr+
  CCE31325.1 201 GRRLLSLIDDTPVVPGDTRAQYTEANNARQILNDCEDDLRDWRP 244
                 ******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2437.77
//
Query:       CCE31326.1  [L=484]
Description: probable oligosaccharyltransferase alpha subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.3e-147  492.6   0.2   1.5e-147  492.4   0.2    1.0  1  Ribophorin_I  Ribophorin I


Domain annotation for each model (and alignments):
>> Ribophorin_I  Ribophorin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  492.4   0.2  8.4e-152  1.5e-147       1     440 [.      37     474 ..      37     475 .. 0.94

  Alignments for each domain:
  == domain 1  score: 492.4 bits;  conditional E-value: 8.4e-152
                   -EEEEEEEEEE-SSSS-EEEEEEEEE--SSS----EEEEE-TTTTTSEEEEEEE-SS..S........EE---------------EEEEEE-SS--- CS
  Ribophorin_I   1 lenenvertidlkksyvketikitvkntgsepvseyylalpkeeaeklslleaslkdkkkkkktk.kveaelkdtskeedlesdvqvyevkLpkple 96 
                   ++n n+++ i+l+k+yvke+++i+v+n+++ep+seyyl+++++++++++ +e+  kd+k+  +++ +++++      e+d +s +q+++++Lp+pl+
    CCE31326.1  37 FKNANLVHVISLEKNYVKEQLNIVVENISKEPQSEYYLPFTSDQIARVGGFEV--KDRKDG-SIDnFISEPA-----EYDPDSATQYFRITLPTPLQ 125
                   79***************************************************..666663.2222333332.....567789************** PP

                   SS-EEEEEEEEEES---EESSSB--TTS-EEEEEEEESS---SS-E.CE-EEEEESSS-EEESS........CCC-ETTEEEE---EEE-SS--S-E CS
  Ribophorin_I  97 pgekvtlevsyvlthalrPlPaeikqaekQlllfktsayvlspYktkkqktkvklpsskiesytkle.....epeksgstltyGpfenvapfslspv 188
                   +g ++tl +s+++++a+rPlPa+i+q++kQ+l++++s y++s+Y t kqkt+vk+ ss+i++ytk++      p+k+g++l yGpf++++++++sp+
    CCE31326.1 126 AGHQQTLGISFYFLKAYRPLPATIAQDDKQFLVHDFSIYAPSAYITLKQKTEVKAASSSIPDYTKITegkkeMPQKQGAKLIYGPFDEKPAGATSPA 222
                   ******************************************************************9888766666********************* PP

                   EEEEEE-S--EEEEEEEEEEEEETTTTEEEEEEEEEEEE-S-B-TT---HHHHHH.HHHCS.--SS-SSBS-EEEE--SS----EEE-SSSB---EE CS
  Ribophorin_I 189 svhyennkplltveklerdievShwggniaveeeyelrNdGAklkgsFsRldyqkseyeknksnkpssalksleaklpagakdvyytDeiGnvstsr 285
                   +v++e++kp+++v++lerdievShwggn+a+ee+y l+N+GA+l+  F+R ++++s y+    ++ ++alk ++++l ag++d+y+tD iGnvstsr
    CCE31326.1 223 QVRFEFTKPVIHVSTLERDIEVSHWGGNVAFEERYALHNHGANLSAPFNRAKFAQSAYM----KPATTALKDIRVPLHAGSVDPYFTDVIGNVSTSR 315
                   ******************************************************98887....5789****************************** PP

                   EETT...E...EEE--SS-B-TT-EEEEEEEEEEEGGGTEEE-TTTEEEEEEES--...--SSEEECEEEEEEEE-TT-EEEEEE-SS--...SEEE CS
  Ribophorin_I 286 lrenekkketelelkPRfPlfGGWkysFtigynlplseflrkekgdkyvlkvplle...sikdvvveevelriiLPegAenvkvsspfpv...esse 376
                   +r++ ++ ++ lelkPR+P+ GGW+y Ftig+n ++ + +rk++++ yvlkvp++e   +++++ +e++++r+ LPegA+nvk+++ +p    ++++
    CCE31326.1 316 FRRS-RR-DALLELKPRYPIYGGWNYPFTIGWNSDAANLVRKTSTGGYVLKVPFMEgpkQAEGIEYEQINIRVLLPEGARNVKFHTGVPEsaiTETS 410
                   ****.34.6***********************************************999999**********************9987666679999 PP

                   EEEE--TT--S-EEEEEEEE-SEETTTS--EEEEEEE--HHHHTCHHHHHHHHHHHHHHHHHHC CS
  Ribophorin_I 377 vslhktyLDttgRpvvtlkkknlvdeeheqkvlvkYdypklallrkpllialavfllfllaivl 440
                   + +hktyLDt+gR+ vt+k++nlvde ++++++++Y+ +++  lrkp+++++ ++++  +a+++
    CCE31326.1 411 IGVHKTYLDTIGRTSVTIKAHNLVDEFRDRDIIISYETSSFDTLRKPFIVFGSMMAVYAAAWAV 474
                   9***********************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3929.15
//
Query:       CCE31327.1  [L=491]
Description: probable hexokinase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-84  282.5   0.0    3.3e-84  282.1   0.0    1.2  1  Hexokinase_2  Hexokinase
    1.7e-72  243.5   0.0      4e-72  242.3   0.0    1.6  2  Hexokinase_1  Hexokinase


Domain annotation for each model (and alignments):
>> Hexokinase_2  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.1   0.0   3.7e-88   3.3e-84       1     240 []     228     471 ..     228     471 .. 0.95

  Alignments for each domain:
  == domain 1  score: 282.1 bits;  conditional E-value: 3.7e-88
                   EEEEEESSSEEEEEEEEGGG-GGGTTTS.-TTSEEEEE--GGGTTTT-S.S-..--HHHHHHHHHSSSTTS-HHHHCCSHHHHHHHHHHHHHHHHC. CS
  Hexokinase_2   1 kiGlIlGtGtNacyleklsnieklegkk.eksgemviNtEwgafgdegk.lpllrtkyDkeldeespnpgeqlfEkmiSGmYLGelvrlvlldliee 95 
                   kiG+I+GtG+Na+y+e++ +i+kl++ k   ++ m+iN+Ewgaf++e+k lp  rt++D+ +d++sp+pg+q+fEkmi+G+YLGe++rlvl+dl+e+
    CCE31327.1 228 KIGCIFGTGCNAAYMEDVGSIPKLAHMKlAPETPMAINCEWGAFDNEHKvLP--RTEFDEVIDRDSPRPGQQAFEKMIAGLYLGEIFRLVLVDLHEN 322
                   69***********************99999***************9888665..******************************************9 PP

                   T.SSSC.....CCCSTTSS-THHHHHHHC--BTT-HHHHHHHHHCCS---.-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-.....SSEEEEE CS
  Hexokinase_2  96 k.llfkgkse.klktpysldteflseieedesedleevrevleellglesvteedleivrevceavsrRaarlvAagiaallkklgkeekekvtvgv 190
                   +  +f +++   ++++ysld++fls+ieed+ e+l+e+++++ + l++ + t+ ++e++r+++e++++Raarl+A+g+aa++kk +    e+++vg+
    CCE31327.1 323 GnHIFANQDIsLMRKAYSLDSSFLSAIEEDPYENLQETHDLFVSRLNIVT-TRPECELIRRLAELIGTRAARLSACGVAAICKKKNY---ESCHVGA 415
                   66***777555999******************************99*988.999*****************************9766...79***** PP

                   ESHHHHHSTTHHHHHHHHHHHHHT--S.......-SEEEEE---TTTHHHHHHHHH CS
  Hexokinase_2 191 dGslyekypkfrerlqealrellgeepe......kkvklklaedGsgvGAAliaav 240
                   dGs+++kyp+f+ r  +alre+l++ ++      ++v++  aedGsgvGAAliaa+
    CCE31327.1 416 DGSVFNKYPHFKARGAQALREILDWPAKsnpkeeDPVEILAAEDGSGVGAALIAAL 471
                   **********************988777888899********************95 PP

>> Hexokinase_1  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.3   0.0   4.5e-76     4e-72       2     199 .]      27     222 ..      26     222 .. 0.96
   2 ?   -2.2   0.0      0.37   3.3e+03      65      88 ..     310     340 ..     305     367 .. 0.62

  Alignments for each domain:
  == domain 1  score: 242.3 bits;  conditional E-value: 4.5e-76
                   HHHHHHHH---HHHHHHHHHHHHHHHHHHHS.S.STS--EE----S---S--EEEEEEEEESSSEEEEEEEEEESSS.-EEEEEEEEE--GGGGGSB CS
  Hexokinase_1   2 leeilkqfelsdeklkelvdrfleemekgLakekeslkmlptyvtrlPtGkekGtylAlDlGgtnlRvllveLlges.kveitqekykipeelktgt 97 
                   ++++++ f++++++lk+++d+f++e+ kgL+ e+ s++m+pt+v+++P+G+e+Gt+lAlD+GgtnlRv++++L++++ +++i q+ky++peelktg+
    CCE31327.1  27 VKRLEDLFTVDTQTLKKITDHFVSELAKGLSVEGGSIPMNPTWVMSFPDGHETGTFLALDMGGTNLRVCQITLTEQKsEFDILQSKYRMPEELKTGN 123
                   7899999************************99888**************************************6555******************* PP

                   HHHHHHHHHHHHHHHHHHH....ST..T-S-EEEEEEE-SSEE-SBTT--EE-S--TT---TT-TTSBHHHHHHHHHHHTT-SEEEEEEE-HHHHHH CS
  Hexokinase_1  98 aeeLFdfiakciaefleeegeekkeekeeeelplGftFSFPveqtsldegtlirwtKgfaikdvegkdvvqllqealerkglpvkvvalvNDTvgtl 194
                   ++eL+++ia+c+++f+e+++ +  +    ++lplGftFS+P +q+ +deg+l+rwtKgf+i++veg++vv +l++al++kg+p+  +al+NDT+gt+
    CCE31327.1 124 SDELWEYIADCLQQFVETHHGDGGKL---NTLPLGFTFSYPATQNYIDEGILQRWTKGFDIAGVEGENVVPMLNSALKKKGVPITLTALINDTTGTM 217
                   *******************9886443...69****************************************************************** PP

                   HHHHH CS
  Hexokinase_1 195 lslaY 199
                   +++aY
    CCE31327.1 218 IASAY 222
                   ****9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.37
                   SEEEEEEEEEESSS.......-EEEEEEEEE CS
  Hexokinase_1  65 tnlRvllveLlges.......kveitqekyk 88 
                     +R +lv+L++++       ++++  + y+
    CCE31327.1 310 EIFRLVLVDLHENGnhifanqDISLMRKAYS 340
                   5699999999966543444433333333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.35
# Mc/sec: 4198.48
//
Query:       CCE31328.1  [L=444]
Description: related to protein-arginine N-methyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3427.36
//
Query:       CCE31329.1  [L=853]
Description: related to polyphosphate synthetase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-98  327.8   0.1    5.2e-98  327.8   0.1    1.6  2  VTC             VTC domain
    2.6e-13   50.2   2.9      5e-13   49.3   2.9    1.5  1  DUF202          Domain of unknown function (DUF202)
    7.4e-13   49.2  10.6    5.2e-05   23.3   0.1    3.9  4  SPX             SPX domain
  ------ inclusion threshold ------
       0.02   14.8   0.1      0.087   12.7   0.1    2.0  2  TrmB            Sugar-specific transcriptional regulator TrmB
      0.037   14.2   0.2        0.1   12.8   0.2    1.7  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.11   11.9   5.5       0.16   11.4   5.5    1.1  1  DUF3246         Protein of unknown function (DUF3246)
          5    6.4   5.1        9.3    5.5   5.1    1.4  1  NOA36           NOA36 protein


Domain annotation for each model (and alignments):
>> VTC  VTC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.3       1.1   2.7e+03      94     144 ..     135     188 ..     118     206 .. 0.59
   2 !  327.8   0.1    2e-101   5.2e-98       1     275 []     276     549 ..     276     549 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
                 EEE--------EEEEEEEE-GGGHHHHH---HHHHHHHHHHHHHT-....HHHHH CS
         VTC  94 ktkheswtgesstkerftlkqkfvksyllgrlpaeerleklkkkee....ekeve 144
                 k++ +++ +     +r+++++ +vk+++  rl+ ++  e+  ++ee    e++++
  CCE31329.1 135 KVHTKQQVKAMEISRRIAVSEHEVKDVV-KRLSERGLNEEGPSEEEfmllEEDLS 188
                 4555566677777889999999999988.55555444444444444444444444 PP

  == domain 2  score: 327.8 bits;  conditional E-value: 2e-101
                 --EEEEEEE-HHHHHHHHHHHHTTS-B----------------------EEEEEEE-TT.-HHHHHHHHT-TT--EEEEEEES-GGG--EEEEEEEE-- CS
         VTC   1 nrnetKywvhsdnvvevktlilkhlpvlvygaseeeiaaallrksadqtitsvYfDnnd.felyenrilkmegaekiRlRwygkldnedvflErktkhe 98 
                 +r++tKywvh+dnv+e+k  ilkhlpvlv++as+e        +++d++its+Y+Dn+d  +lye r++k+egae iRlRwyg +++e++f+Erkt++e
  CCE31329.1 276 VRQTTKYWVHPDNVTELKLIILKHLPVLVFNASKEF-------EQQDSAITSIYYDNPDtWDLYEGRLKKTEGAEAIRLRWYGGMQTETIFVERKTHRE 367
                 69*******************************999.......899***********9868************************************** PP

                 ------EEEEEEEE-GGGHHHHH---HHHHHHHHHHHHHT-..HHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEEEE--TT--SEEEEEEEEEEEEE CS
         VTC  99 swtgesstkerftlkqkfvksyllgrlpaeerleklkkkee..ekevekleqlaeeiqntilrnslqPvvrtsYlRaaFqlstdnavRitiDtnlcmvr 195
                 +wtge+s k+rf+lk+k+v++y++g+l    ++ek +k+++  ek +++ e+la+eiq  +l++ ++Pv+r  Y+R+aFql+ d +vRi++Dt+l+mvr
  CCE31329.1 368 DWTGEKSVKARFSLKEKNVNAYMKGELLPTAIFEKARKEGKksEKAIAEDERLASEIQWSVLKRGYKPVCRSFYNRTAFQLPADARVRISLDTELTMVR 466
                 *****************************999999999999888999**************************************************** PP

                 ----SSSS-SS-TSS-SSTTSS-TTTT--GGGEEE--SEEEEEEE--...----HHHHHHHTSTT-EE-TT--HHHHHHHHHH CS
         VTC 196 edsfeerrkledtwerldedvqqpvkllrkgevvrfpyavlEvKlqt...skspewiqeLlashlvievpkfSKYqhgvaslh 275
                 ed+++ r ++  +w+r+d++++ p++ l +++vvrfpyavlEvKlqt   ++ pew+++L++shlv++vpkfSK++hg+a+l+
  CCE31329.1 467 EDNLDGRSRSGANWRRTDIGIDWPFSQLPSEDVVRFPYAVLEVKLQTqmgQEPPEWVRQLISSHLVESVPKFSKFIHGTACLF 549
                 *************************************************99*****************************996 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   2.9     2e-16     5e-13       1      67 [.     746     810 ..     746     811 .. 0.94

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 2e-16
      DUF202   1 rdglAnERTfLaWlRtslalialglallrffltgepsalgkilglilivlgiltllvglvrylrrqr 67 
                 ++++A+ERTfL Wl  s+++ +++++ll+f   ++p++++++++ ++ +l++l+l++++ +yl r r
  CCE31329.1 746 KVYFAAERTFLGWLEYSIYISTIAVTLLNF--GEHPTRTSFWASGLFTLLAVLSLCYSIGTYLYRSR 810
                 689***************************..88888888**********************99987 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   5.3e-08   0.00014       1      33 [.      72     104 ..      72     122 .. 0.91
   2 ?    0.4   0.1      0.19     5e+02     183     219 ..     122     158 ..     107     190 .. 0.76
   3 !   23.3   0.1     2e-08   5.2e-05     349     377 ..     196     224 ..     192     228 .. 0.89
   4 !    7.4   0.7    0.0014       3.5      72     136 ..     586     680 ..     560     761 .. 0.55

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5.3e-08
         SPX   1 MKFakeLeenlvpEWrdaYldYkqLKKlIkkvq 33 
                 MKF+++L ++ + E +  Y+dY++LK  +k+v 
  CCE31329.1  72 MKFGEQLRSSVIREYQWYYIDYNGLKDDLKRVG 104
                 *******************************96 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.19
         SPX 183 ekeFferLdseLnkvetFykakeeefterlesLrkql 219
                 e  F+  L +eL+kv t ++ k  e  +r+++ ++++
  CCE31329.1 122 EIRFVGKLEAELEKVHTKQQVKAMEISRRIAVSEHEV 158
                 6678999999999999999998888888877655555 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 2e-08
         SPX 349 lLKsYqeLNrtAFrKIlKKfDKvtaltas 377
                 +L ++  +N t+F KI KK+DK t+ +++
  CCE31329.1 196 DLAKFVQVNYTGFYKIIKKHDKMTGWHLR 224
                 799*********************98876 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0014
         SPX  72 adesgnsaadasssepkdeaeslprrsplsrssrssssygglvssppsansssssddssesnpa..............................d 136
                 +++s++  +d++ ++ ++e+e+ +++ + s+s+ ++ss ++  + pp + +++++  +++++++                              +
  CCE31329.1 586 TNTSEDDDDDDDDEDMDSEDERDRPSAHPSTSNGQHSSSSRALTAPPAPTDTEGQTVDHPASNEdypiydsddeydpnyeleearrvggwpyysT 680
                 22222222333333333344455555566666667777777777777777777777777776444666655555555555555555555555550 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.4e-05     0.087      20      54 ..     139     173 ..     134     182 .. 0.88
   2 ?   -2.9   0.0       2.5   6.4e+03      24      45 ..     193     214 ..     192     214 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.4e-05
                 HCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEE CS
        TrmB  20 lgpatadeiaeelgvprskvYevLrsLedkGlVer 54 
                 +++ +a ei++++ v++  v +v+++L+++Gl e 
  CCE31329.1 139 KQQVKAMEISRRIAVSEHEVKDVVKRLSERGLNEE 173
                 577899*************************9665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.5
                 HHCHHCCCTTSSCHCHHHHHHH CS
        TrmB  24 tadeiaeelgvprskvYevLrs 45 
                 ++ ++a+ + v ++  Y+++++
  CCE31329.1 193 DVHDLAKFVQVNYTGFYKIIKK 214
                 6789999999999999999875 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2     4e-05       0.1      19      52 ..     138     171 ..     126     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4e-05
                     HHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
  Fe_dep_repress  19 ekkvvktkdlaerLnvspssVsemlkkLekdGyv 52 
                     +k+ vk +++++r++vs   V   +k+L++ G+ 
      CCE31329.1 138 TKQQVKAMEISRRIAVSEHEVKDVVKRLSERGLN 171
                     57789***************************95 PP

>> DUF3246  Protein of unknown function (DUF3246)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.5   6.3e-05      0.16      55     108 ..     585     661 ..     579     692 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.3e-05
     DUF3246  55 tsstgsddddD.dddetDcet..eiet.vPtgtttidptssgtitsiptas...................ddddetd 108
                 t+ t+ ddddD dd++ D+e   + +   P  +  +++ ss  +t+ p+ +                   d dde d
  CCE31329.1 585 TTNTSEDDDDDdDDEDMDSEDerDRPSaHPSTSNGQHSSSSRALTAPPAPTdtegqtvdhpasnedypiyDSDDEYD 661
                 44444444444245555666334555557755555566777777877666655666666666666666665566555 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.1    0.0036       9.3     270     293 ..     586     609 ..     565     624 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0036
       NOA36 270 ddegdedddddddeedddeeedde 293
                 ++++++ddddddde+ d+e+e d 
  CCE31329.1 586 TNTSEDDDDDDDDEDMDSEDERDR 609
                 344444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      799  (0.0445647); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.42
# Mc/sec: 6033.90
//
Query:       CCE31330.1  [L=1019]
Description: probable replication licensing factor MCM4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.3e-100  335.2   0.0   1.8e-100  334.6   0.0    1.2  1  MCM           MCM P-loop domain
    1.2e-39  135.0   0.9    2.3e-39  134.1   0.9    1.4  1  MCM_OB        MCM OB domain
    2.3e-27   95.3   2.3    4.8e-27   94.2   2.3    1.6  1  MCM_lid       MCM AAA-lid domain
    4.5e-18   65.8   0.2    1.7e-17   63.9   0.1    2.0  2  MCM_N         MCM N-terminal domain
    8.3e-06   25.8   0.1    7.6e-05   22.7   0.0    2.6  2  AAA_5         AAA domain (dynein-related subfamily)
    3.4e-05   23.3   0.1    0.00068   19.1   0.0    2.4  3  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.003   17.4   0.0      0.008   16.0   0.0    1.7  1  AAA_3         ATPase family associated with various cellular 
  ------ inclusion threshold ------
       0.15   12.5   0.7        1.7    9.1   0.6    2.7  2  STAS_2        STAS domain


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.6   0.0  8.2e-104  1.8e-100       2     223 ..     587     810 ..     586     811 .. 0.97

  Alignments for each domain:
  == domain 1  score: 334.6 bits;  conditional E-value: 8.2e-104
                 HHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSB..BCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSS CS
         MCM   2 veeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktk..lrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLt 98 
                 +++i+++a+++di+e l++s+apsiy+ +dvkk+illqlfgg++k+ +++ +  +rgdinvll+gdp+taKsq+L yv+k+apr++ytsgkgssa+gLt
  CCE31330.1 587 EAKIRDTAARDDIYELLARSLAPSIYEADDVKKGILLQLFGGTNKTFHKGGNpkYRGDINVLLCGDPSTAKSQILSYVHKIAPRGIYTSGKGSSAVGLT 685
                 6799*****************************************998865445********************************************* PP

                 SEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHH CS
         MCM  99 aavvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsr 197
                 a+v+rd+et+++vle+Galvl+d+GvcciDefdkm++++rs+lhE+mEqqt+s+aKaGi++tLnarts+la+anp+++ry+++ sv +ni+l+++lLsr
  CCE31330.1 686 AYVTRDPETRQLVLESGALVLSDGGVCCIDEFDKMSDATRSVLHEVMEQQTVSVAKAGIITTLNARTSILASANPIGSRYNPNLSVPQNIDLPPTLLSR 784
                 *************************************************************************************************** PP

                 SSEEEEE-SSTTHHHHHHHHHHHHHH CS
         MCM 198 FDlifvllDkvdeekDeelaehivsl 223
                 FDl++++lD+vde++D++la+h++sl
  CCE31330.1 785 FDLVYLILDRVDEKTDKRLAKHLLSL 810
                 ***********************986 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.9     1e-42   2.3e-39       2     125 ..     394     522 ..     393     523 .. 0.98

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 1e-42
                 XGG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEE.....S----SB-..TTT-HHH-EEE-GGGSEEEEEEEEEEE------------ CS
      MCM_OB   2 lRdlrsehigklvkveGivtrasevkpklkkavfeckkcgktvev.....eleePrkCeekeCeskdpfkletekskfvdfqklklQEspeevpaGelP 95 
                 lRdl+ +++++l++v+G+v+r++ v p++k a+f+c+ c+++v+v     +++eP++C+++ C+sk+++++++++++f d+q +klQE+p++vp+G++P
  CCE31330.1 394 LRDLNPSDMDRLICVKGLVIRTTPVIPDMKDAFFRCNVCNHSVNVgldrgKIHEPTECPRPICKSKESMQIVHNRCSFEDKQVIKLQETPDAVPPGQTP 492
                 8****************************************9998899999999********************************************* PP

                 -EEEEEEEGGGTT---TT-EEEEEEEEEEE CS
      MCM_OB  96 rslevileddlvdkvkPGdrvevtGiyral 125
                 +s++v+++++lvd +k+Gdrve+tGi+ra+
  CCE31330.1 493 HSVSVCVYNELVDFCKAGDRVELTGIFRAS 522
                 ***************************986 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   2.3   2.2e-30   4.8e-27       1      86 [.     829     916 ..     829     917 .. 0.94

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 2.2e-30
                 HHHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHHTSS..TSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHHHH CS
     MCM_lid   1 ellrkYiayarekikPklseeakeklseaYvelRkeeeds..krksipitvRqLesliRLseAlAklrlsevvteedveeairllkes 86 
                 e+l+ Yi+yar++i+P++s ea+e+l++ Yv +R   +d   ++++i++t+RqLes+iRLseA+Ak+rls +vt++dv ea rl++++
  CCE31330.1 829 EFLTLYISYARSQIQPVISREAAEELVNCYVAMRALGQDVraAEQRITATTRQLESMIRLSEAHAKMRLSGTVTRDDVLEANRLIQTA 916
                 68999******************************9954456899****************************************986 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.1   7.7e-21   1.7e-17       3      87 ..     228     334 ..     227     381 .. 0.80
   2 ?   -3.1   0.0       5.6   1.2e+04      62      83 ..     718     739 ..     714     754 .. 0.71

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 7.7e-21
       MCM_N   3 kFedFLeefk..............ddsededgekkYrdqlqemaerekttLevdlddLaafde..eLaeailenpkeylplleealkevvkklepsykd 85 
                 +F+dFL++f+                ++ e++++ Y + l++m+  + t+L++d++dL+ + +  +L+++i+ +p+e++p++++ +++++ ++++ +  
  CCE31330.1 228 SFKDFLRNFTqkyrmyrdgfsdeeVRDAMEAESRPYWEALEHMLLLGTTRLYLDISDLNLYPPtrKLWHQIQAYPQEIIPVMDQSVHDLMVEIARTESI 326
                 7***************99999888555577788****************************8888*************************999994333 PP

       MCM_N  86 d......a 87 
                 +      +
  CCE31330.1 327 RnghsqsT 334
                 23433330 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.6
       MCM_N  62 keylplleealkevvkklepsy 83 
                  ++ ++ +++l+ev+++ + s 
  CCE31330.1 718 DKMSDATRSVLHEVMEQQTVSV 739
                 5666777888999997766554 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.4e-08   7.6e-05       1     124 [.     646     762 ..     646     785 .. 0.77
   2 ?   -0.7   0.1      0.58   1.3e+03      50      89 ..     882     921 ..     846     966 .. 0.57

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.4e-08
                 EEEEE--SSSSHHHHHHHGGGGB.......S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.......nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleer 92 
                 +vlL G+p t+Ks++  ++ +         ++    v lt++ t++          ++ +l+ ++lv     g ++++DE++++++++ ++L+ ++e++
  CCE31330.1 646 NVLLCGDPSTAKSQILSYVHKIAprgiytsGKGSSAVGLTAYVTRDPE-------TRQLVLESGALV--LSDGGVCCIDEFDKMSDATRSVLHEVMEQQ 735
                 689999999999999999999985444444444444444444444443.......555567999999..99**************************** PP

                 EEE..-SSSEEE---......-EEEEEESS-- CS
       AAA_5  93 rllleeggelvkaknddllerfrviatanpld 124
                 ++++++ g  +  ++      ++++a+anp  
  CCE31330.1 736 TVSVAKAGIITTLNAR-----TSILASANPIG 762
                 ***9999999988886.....89999999877 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.58
                 .......--------G-SEEEEESGGG--HHHHHHHHHHH CS
       AAA_5  50 gttslvdsplvraaregeilvlDEveraesevlnsLlsll 89 
                  +   + s++  ++r + ++  D+v +a++ ++ +L +  
  CCE31330.1 882 LESMIRLSEAHAKMRLSGTVTRDDVLEANRLIQTALKTAA 921
                 5555555555555665555555555556666666655543 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.0       4.3   9.6e+03      40      71 ..     311     342 ..     308     348 .. 0.70
   2 ?    1.2   0.0     0.088     2e+02      21      48 ..     643     670 ..     641     682 .. 0.90
   3 !   19.1   0.0     3e-07   0.00068      98     160 ..     700     762 ..     695     798 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 4.3
  Mg_chelatase  40 krlpsllpplseeealevakiasvagkkeeek 71 
                   + ++ l+ ++ ++e++   + +s ag++++++
    CCE31330.1 311 QSVHDLMVEIARTESIRNGHSQSTAGQRATQD 342
                   56677788888888888888888887665554 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.088
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlpsllpp 48 
                   G  n+ll+G p + K+ + + ++++ p+
    CCE31330.1 643 GDINVLLCGDPSTAKSQILSYVHKIAPR 670
                   7789****************99999886 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 3e-07
  Mg_chelatase  98 kpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcp 160
                   + G++ l+  Gv  +DE+ +++  +  vL e +e+++v++++a   ++  ar+ ++a++Np  
    CCE31330.1 700 ESGALVLSDGGVCCIDEFDKMSDATRSVLHEVMEQQTVSVAKAGIITTLNARTSILASANPIG 762
                   679999******************************************************965 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.6e-06     0.008      48     115 ..     691     763 ..     647     774 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.6e-06
       AAA_3  48 eekekefefkkGpvfan...llladeinrappktqsalleameerqvtvege..thklpepflvlatqnPieq 115
                 + +++++ +++G+++ +   +   de ++ +  t+s l e+me+++v+v+++   ++l+    +la  nPi +
  CCE31330.1 691 DPETRQLVLESGALVLSdggVCCIDEFDKMSDATRSVLHEVMEQQTVSVAKAgiITTLNARTSILASANPIGS 763
                 456688888888876433448999**********************99986522679*************976 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.86   1.9e+03      12      36 ..     260     285 ..     257     287 .. 0.82
   2 ?    9.1   0.6   0.00074       1.7       1      42 [.     895     939 ..     895     976 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.86
      STAS_2  12 aaelreqllealaag.aevvvDlsgv 36 
                  ++ +e+l+++l  g +++ +D s++
  CCE31330.1 260 SRPYWEALEHMLLLGtTRLYLDISDL 285
                 57789*****9966668*****9988 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00074
      STAS_2   1 LsLsGeldldtaaelreqlleal...aagaevvvDlsgvervDsa 42 
                 ++LsG +++d++ e  +  + al   a+ ++ ++D+s +++  s+
  CCE31330.1 895 MRLSGTVTRDDVLEANRLIQTALktaATDSQGRIDMSLLTEGTSS 939
                 69***************9999998755559*******99986665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1019 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 6758.19
//
Query:       CCE31331.1  [L=198]
Description: related to coatomer protein zeta chain [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-15   56.7   0.2    1.1e-13   51.3   0.8    2.0  2  Clat_adaptor_s  Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.9   0.0    0.0053        95       2      21 ..      10      30 ..       9      36 .. 0.81
   2 !   51.3   0.8   6.4e-18   1.1e-13      23     138 ..      48     162 ..      45     166 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.0053
                    EEEEEEE.-TTS-EEEEEESS CS
  Clat_adaptor_s  2 ikailil.nkkgkvrlakfyt 21
                    ++a+lil  ++g + l+k+y 
      CCE31331.1 10 VQAVLILgTEDGARILTKYYS 30
                    799999934789********5 PP

  == domain 2  score: 51.3 bits;  conditional E-value: 6.4e-18
                     S-CHHHHHHHHHHHHHHHTT-SSS-SEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT.S-SHHHHHHCHHHHHHHHHC CS
  Clat_adaptor_s  23 vddkkkqklieevyelvsaRdsklsniveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdkyfg.nVceldlvfnfekvylildE 116
                     + d k qk++e+    ++a+++   +i+ +++  v+Yk   ++  +v+ +  ene+++ +++    +sL  +f+ +V ++ +++n++ v l++dE
      CCE31331.1  48 YADLKAQKAFEKGLIEKTAKQT--GDIILYDNRIVLYKLESDVMIYVVGSLDENEILLYNAVLAIRDSLHLVFKqSVDKRTIIENYDLVSLAIDE 140
                     5677889999999999998844..69******99***************************************999******************* PP

                     CEETTEES---HHHHHHCHHHH CS
  Clat_adaptor_s 117 ivsgGeiletskkevlkrvell 138
                     iv+ G ilet+++ +++rv+ +
      CCE31331.1 141 IVDDGIILETDPTIIVQRVSKA 162
                     *******************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1468.97
//
Query:       CCE31332.1  [L=457]
Description: related to translation initiation protein SUA5 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-54  184.7   0.0    1.6e-54  184.2   0.0    1.2  1  Sua5_yciO_yrdC  Telomere recombination
    1.5e-31  109.7   0.0    2.6e-31  109.0   0.0    1.4  1  SUA5            Putative GTP-binding controlling metal-bindin


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.2   0.0   1.7e-58   1.6e-54       5     179 .]      54     241 ..      50     241 .. 0.92

  Alignments for each domain:
  == domain 1  score: 184.2 bits;  conditional E-value: 1.7e-58
                     TTSEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-.TC-.....-HHHHH..........HHHCT-SSSCEEEEE CS
  Sua5_yciO_yrdC   5 kGgivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklae.sev.....eeealk..........llerfwPGpitlllk 83 
                     k+  va+ptetvYgL++dat++++v+ ++ +Kgrpsd+pl+v+v +l++l++l++ ++      +    +          l+++fwPGp+t+ll+
      CCE31332.1  54 KDTPVAFPTETVYGLGADATRSASVKGIYSAKGRPSDNPLIVHVCDLQMLRALLKaQDGkddnsD----NdatipavykpLIDKFWPGPLTILLP 144
                     6789**************************************************96332444540....25555666666*************** PP

                     ..E-T.S-HHHHTTTTEEEEEE-SSHHHHHHHHHCTS-EEEEES-STTS-S-SSHHHHHHHC-TTSECB-SS---SSS---EEEETTSSTSSECE CS
  Sua5_yciO_yrdC  84 rskek.lpkevapglktvGvrlPdtplarlLlealgeplvaTSanlsgepsitdaeeveeelgeivdlildggeiavgvdstVvdltegkpkilR 177
                     +++ + l++ev++glkt+Gvr+P++pla+ L++ +g pl+a+San+s++ps+t+a++v+++l++++++ildgg+++vgv+stVvd + ++p +lR
      CCE31332.1 145 NTDPSpLASEVTAGLKTFGVRMPSSPLALTLIKLAGVPLAAPSANASTKPSPTTAQHVKDDLDGKIEWILDGGSCTVGVESTVVDGLCHPPAVLR 239
                     998889*********************************************************************************99****** PP

                     XX CS
  Sua5_yciO_yrdC 178 rG 179
                     +G
      CCE31332.1 240 PG 241
                     98 PP

>> SUA5  Putative GTP-binding controlling metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.0   2.9e-35   2.6e-31       4     134 .]     246     453 ..     243     453 .. 0.83

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 2.9e-35
                 HHHHHHS........---.........-------------S-SSEEEEE--GGGHHHH................................HHHHHTTS- CS
        SUA5   4 eeleevl........davek.....keekpraPGmkyrHYaPkapvvlveaeeeeeaake...........................ekleekkksgkk 62 
                 +e++++             k      +++praPGmky+HY+P+a+vvl+ea+  +  + +                            +++ +++s++ 
  CCE31332.1 246 DEIRSCPgwegvvkaY---KdqseeGKAAPRAPGMKYKHYSPRARVVLYEADYVDGGRGIvaadmhaalaslpppaavltnghdrhaTEMNGNNSSKRM 341
                 5778787444333220...13344578999******************99998777666699************************99999******** PP

                 EEEEEEGGGTGG.........TSEEEEE........................................E-TT-HHHHHHHHHHHHHHHHHS--SEEEEE CS
        SUA5  63 vgvlatseskea.........assvlsls......................................lgsrsdleeaarnLFaaLrelDeegvdlilve 114
                 vg+++t+++ +a         +                                             lg  +d++ +a++LF+aLrelD++gv++i+ve
  CCE31332.1 342 VGIIRTKRWPAAgglqctnlqR------LaervdgdehtgepssyeiysshlmdqedkivgevfdisLG--QDTQGIAQGLFSALRELDRRGVEVIFVE 432
                 ************8775554430......145566677777777888888899999999999****7666..**************************** PP

                 ----S.TTHHHHHHHHHHHTT CS
        SUA5 115 gvpee.glglAvmnRLrkAAg 134
                 gv+++ ++++AvmnRLrkAA+
  CCE31332.1 433 GVDDNvDIAAAVMNRLRKAAS 453
                 ***888**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3659.24
//
Query:       CCE31333.1  [L=141]
Description: uncharacterized protein CPUR_05184 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 1148.27
//
Query:       CCE31334.1  [L=214]
Description: uncharacterized protein CPUR_05185 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00014   21.1   0.1      0.013   14.7   0.0    2.5  2  PIF1      PIF1-like helicase
    0.00067   19.4   0.0     0.0019   17.9   0.0    1.7  1  AAA_30    AAA domain


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.4e-06     0.013     143     217 ..       2      71 ..       1      88 [. 0.77
   2 !    4.0   0.2    0.0027        24     329     347 ..     147     165 ..      94     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-06
                 EEEEE--TTS-----SSSSS---BGC.....CSCHHHH--.EEEE-S-STTTT...........HHHHHHHHHHHCT- CS
        PIF1 143 tvvlgGDfrQilPviekgsraeivaas..ikeSklWkevk.vlkLtknmRllsesldetekkelkeFskwllkigdGk 217
                  v l GDf Q++Pv +k+ ++++ a +   ++  ++++++  + L++++R++ +s         k F + l +++dG+
  CCE31334.1   2 SVLLLGDFAQLPPVFDKPFKKTTSARAdkAHAQVMYEKFNgSVFLKQVVRQAGDS--------QKPFRDALAALRDGN 71 
                 68999************98877665431133455788888899999999999964........577888888888887 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0027
                 S-SCEEE-TT-EEEE-S-- CS
        PIF1 329 pnhvLkLkvGvpvmllrNl 347
                  +++L L vG++vml  Nl
  CCE31334.1 147 LQQQLSLCVGAKVMLTENL 165
                 46899999******99998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.1e-07    0.0019     117     179 ..       1      78 [.       1      86 [. 0.73

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.1e-07
      AAA_30 117 akvilvGDerQlasVeaGgvlrdlvea............agigtaeLtevvRq...keseeraaalalregdae.eale 179
                 ++v+l+GD +Ql++V    ++++ ++a            +  g++ L++vvRq   +++ +r+a  alr+g+++ e ++
  CCE31334.1   1 MSVLLLGDFAQLPPVFDK-PFKKTTSAradkahaqvmyeKFNGSVFLKQVVRQagdSQKPFRDALAALRDGNPTpEHFH 78 
                 579************653.343333334555555555535669**********76335899***********9866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1777.42
//
Query:       CCE31335.1  [L=257]
Description: uncharacterized protein CPUR_05186 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-10   39.9   0.0      4e-10   39.5   0.0    1.1  1  Pkinase         Protein kinase domain
    0.00038   19.8   0.0    0.00052   19.4   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00073   19.0   0.1     0.0014   18.1   0.1    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.016   14.8   0.0      0.023   14.3   0.0    1.2  1  RIO1            RIO1 family
      0.016   15.1   0.4      0.045   13.7   0.1    1.6  2  APH             Phosphotransferase enzyme family
       0.14   10.9   0.1       0.19   10.5   0.1    1.1  1  Pkinase_fungal  Fungal protein kinase
       0.15   11.8   0.1       0.64    9.7   0.0    1.8  2  DUF3336         Domain of unknown function (DUF3336)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.6e-13     4e-10      43     163 ..     103     221 ..      92     239 .. 0.82

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1.6e-13
                 HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEE CS
     Pkinase  43 kkvlrEikilkklk...hpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgel 137
                 + +++Ei+ ++ l+   hpniv++ +++ ++ ++  ++l  +e   l +++++    ++ +   +++ i +g+++lHs gi+H D+ p+ i++d+ +  
  CCE31335.1 103 NLAAHEIEAFELLRqhpHPNIVEYRGCVVSDGRISgICLAKLEMS-LYERMQD---STPFDKDLFLEGIERGIRHLHSLGIVHNDINPATIMLDKLDRP 197
                 45678888877777777*************999997888888854.6666665...666677789*****************************99999 PP

                 EE-SGTTSEESSSSCSBCTTTSCGGG CS
     Pkinase 138 KitDFGlakelessskltsfvgtseY 163
                  i+D++  ++  +  +l+   gt+++
  CCE31335.1 198 VIIDLDTWQQNGQ--ELDMKKGTPDW 221
                 9***998776555..46777777776 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     2e-07   0.00052      49     140 ..     109     195 ..      95     217 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2e-07
                  HHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT CS
  Pkinase_Tyr  49 leeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenk 140
                  +e  +++++  hpniv++ g++++++++  +    +  +L+  L ++  +  t  d+  f   + +G+++L+s  +vH d+    ++l++ +
   CCE31335.1 109 IEAFELLRQHPHPNIVEYRGCVVSDGRISGI----CLAKLEMSLYER-MQDSTPFDKDLFLEGIERGIRHLHSLGIVHNDINPATIMLDKLD 195
                  56678999***************99995544....456777777776.55556677777999**********************99999854 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   5.3e-07    0.0014     122     168 ..     162     204 ..     141     215 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.3e-07
         Kdo 122 allkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldk 168
                   l+ + r i+ lh++g+ H d+++  i+l++ +    + ++iDld 
  CCE31335.1 162 LFLEGIERGIRHLHSLGIVHNDINPATIMLDKLD----RPVIIDLDT 204
                 567889999************************9....99*****96 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.9e-06     0.023      51     149 ..     101     202 ..      81     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.9e-06
                 HHHHHHHHHHHHHHHHHTT--S--EEEEETTEEEEE--EETTEEGGBHHHCG.-.....HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT. CS
        RIO1  51 vklwaekEfrnLkrleeagvpvPkpielkrhvlvmefigedgvaapklkdve.e.....eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded. 142
                  +  a  E+++ + l+++  p P+ +e++  v+    i+  g+ ++kl+    e     +  +++l+ e +e  ++ ++  g+vH D++   +++d+  
  CCE31335.1 101 LRNLAAHEIEAFELLRQH--PHPNIVEYRGCVVSDGRIS--GICLAKLEMSLyErmqdsTPFDKDLFLEGIERGIRHLHSLGIVHNDINPATIMLDKLd 195
                 567789999999999999..9999999999999999999..77777776544332332344567899999999999*******************9976 PP

                 EEEE--G CS
        RIO1 143 kvviIDv 149
                 ++viID+
  CCE31335.1 196 RPVIIDL 202
                 ******7 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.96   2.5e+03      43      58 ..     100     115 ..      64     134 .. 0.59
   2 ?   13.7   0.1   1.8e-05     0.045     152     195 ..     166     204 ..     140     206 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.96
                 HHHHHHHTT-B--B-C CS
         APH  43 llrlLakagvpvPevl 58 
                  lr+La++++ + e+l
  CCE31335.1 100 RLRNLAAHEIEAFELL 115
                 4556666655444444 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.8e-05
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfed 195
                  +++  ++l+   + +++H+D++p  +++d+ d +v  +iD+++
  CCE31335.1 166 GIERGIRHLH---SLGIVHNDINPATIMLDKLDRPV--IIDLDT 204
                 4556667777...7****************9999**..***997 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   7.3e-05      0.19     318     362 ..     170     208 ..     161     221 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.3e-05
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakel 362
                     g r L+   gi+H+Di    i++      + ++ ++iDLD   + 
      CCE31335.1 170 GIRHLH-SLGIVHNDINPATIMLD-----KLDRPVIIDLDTWQQN 208
                     678999.99**************9.....78999******86665 PP

>> DUF3336  Domain of unknown function (DUF3336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.52   1.3e+03      42      62 ..      85     106 ..      81     131 .. 0.64
   2 ?    9.7   0.0   0.00025      0.64      22      65 ..     203     245 ..     199     246 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.52
     DUF3336  42 endes.yYdyklvkkvlkkLrk 62 
                 ++ e+ yY+  +   +l++L  
  CCE31335.1  85 KEAEFlYYNIDTKATRLRNLAA 106
                 5677778887776666666654 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00025
     DUF3336  22 eeWkeaAkeLDellgndeWkendesyYdyklvkkvlkkLrklre 65 
                 + W+++ +eLD  +g  +W  n  s Ydy l +k++  L k+re
  CCE31335.1 203 DTWQQNGQELDMKKGTPDWSING-SKYDYALFEKDIFGLSKIRE 245
                 67*****************9775.58*********999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2183.47
//
Query:       CCE31336.1  [L=307]
Description: uncharacterized protein CPUR_05187 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00012   21.8   0.0    0.00026   20.7   0.0    1.6  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    0.00037   18.6   0.0    0.00051   18.1   0.0    1.1  1  Herpes_Helicase  Helicase
  ------ inclusion threshold ------
      0.013   14.7   0.0      0.018   14.3   0.0    1.1  1  PIF1             PIF1-like helicase


Domain annotation for each model (and alignments):
>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.4e-08   0.00026       3      46 ..     146     185 ..     144     190 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.4e-08
    UvrD_C_2   3 yaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRAr 46 
                 ya+ti+k+QG   +  iv+     ++r +     lLY+a++R r
  CCE31336.1 146 YAMTIYKSQGMTLDLAIVDLKARGTPR-P---LGLLYVALSRVR 185
                 9*****************444444433.4...89********65 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   8.6e-08   0.00051     731     777 ..     145     192 ..     137     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 8.6e-08
  Herpes_Helicase 731 klamtiaksqGlslekvAicFgnh.knlklssvYvalsRatdseflvm 777
                        amti ksqG+ l+   ++  +      l  +YvalsR++  e+l +
       CCE31336.1 145 SYAMTIYKSQGMTLDLAIVDLKARgTPRPLGLLYVALSRVRRLEHLAI 192
                      579******************99945556899**********999976 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.9e-06     0.018     331     363 ..      38      70 ..      25      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.9e-06
                 SCEEE-TT-EEEE-S--CTT-SC-TCEEEEEEE CS
        PIF1 331 hvLkLkvGvpvmllrNldqsaGLcNGtrlivtq 363
                  +L L +G+ vml   + ++aGL+NG+r+ v++
  CCE31336.1  38 AELLLSIGARVMLTMSIWTEAGLVNGSRGYVVD 70 
                 5788*************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2265.17
//
Query:       CCE31337.1  [L=308]
Description: uncharacterized protein CPUR_05188 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0034   18.4   0.1     0.0064   17.5   0.1    1.4  1  Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
     0.0053   17.1   0.2      0.011   16.1   0.2    1.5  1  Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   7.1e-07    0.0064       1      86 [.      23     111 ..      23     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.1e-07
  Myb_DNA-bind_3   1 eWspeeekilvdllveqvkkgnriekktfkkeawkeileefnaktgak...ytkkqlknrlkklrkeyklvkellersgfsWDpttktv 86 
                     +Ws+ e+  l++ l+e  +++   +k    ++ +++i+e+f++ + +     t+k l+n+++ l   yk +    +++g + D +t ++
      CCE31337.1  23 SWSRDETFKLLEKLLEARRNRTLCTKDRTANRVYESIAETFRRSHPSDphiWTSKRLRNKHDDLAHLYKFWYIACDEPGCHGDRKTGKI 111
                     5***************988888888999999************5544422269*******************99999999999888776 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   1.2e-06     0.011       3      68 ..      23      91 ..      21      93 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-06
                    SS-HHHHHHHHHHHHH...HHHHHHH..SS--HHHHHHHHHHHHHHC--....--HHHHHHHHHHHHHHHH CS
  Myb_DNA-bind_4  3 kWteeetklLieawge.rilelrfqergkkrnkklWeevaeamaergyk....rspeqCkeKienLkkrYk 68
                     W+++et  L+e   e r  +  ++ + +  n+ ++e++ae  ++ + +     + + +++K ++L   Yk
      CCE31337.1 23 SWSRDETFKLLEKLLEaRRNRTLCT-KDRTANR-VYESIAETFRRSHPSdphiWTSKRLRNKHDDLAHLYK 91
                    7**********99988443444443.4566666.**********9865333347************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2289.12
//
Query:       CCE31338.1  [L=183]
Description: uncharacterized protein CPUR_05189 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.011   15.5   0.1       0.03   14.1   0.1    1.8  1  HTH_23         Homeodomain-like domain
      0.027   14.5   0.0      0.053   13.6   0.0    1.4  1  VHP            Villin headpiece domain
      0.083   13.0   0.5       0.16   12.1   0.1    1.8  2  Trp_repressor  Trp repressor protein


Domain annotation for each model (and alignments):
>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   5.1e-06      0.03      11      40 ..     133     162 ..     121     167 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.1e-06
      HTH_23  11 llllaeGlsvreIAreLgvsrrTvyrwlkr 40 
                 l+lla G+s+r +A  +++s+  + r+ + 
  CCE31338.1 133 LYLLASGKSQRNAASFFHISQASIHRIARE 162
                 456667********************9775 PP

>> VHP  Villin headpiece domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   8.9e-06     0.053       3      28 ..      90     115 ..      90     116 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.9e-06
         VHP   3 sdedFeevFgmtreeFykLPkWKqnn 28 
                 sd+dF+ +  m ++ F+kL  W ++n
  CCE31338.1  90 SDDDFKVICRMRKDVFKKLVYWMRTN 115
                 8*********************9987 PP

>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.85   5.1e+03      40      54 ..      36      50 ..      20      56 .. 0.54
   2 ?   12.1   0.1   2.7e-05      0.16      34      76 ..     124     166 ..      95     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.85
  Trp_repressor 40 qvvkeLLkeelsqre 54
                     + +LL++++  re
     CCE31338.1 36 LLAWALLQKKQAERE 50
                   344456666665555 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.7e-05
  Trp_repressor  34 alaqRlqvvkeLLkeelsqreIaeelgvSiAtItRvsrsLktg 76 
                     ++  l v+  LL  ++sqr+ a+   +S A I R +r+   +
     CCE31338.1 124 RVELKLMVYLYLLASGKSQRNAASFFHISQASIHRIARECSRA 166
                    56677889999*************************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1361.06
//
Query:       CCE31339.1  [L=306]
Description: uncharacterized protein CPUR_05191, partial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.7   0.0       0.26   11.4   0.0    1.6  1  Cyclin_C  Cyclin, C-terminal domain
       0.21   10.9   0.0       0.37   10.2   0.0    1.3  1  ExoD      Exopolysaccharide synthesis, ExoD


Domain annotation for each model (and alignments):
>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.9e-05      0.26      60     111 ..     244     293 ..     235     301 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.9e-05
                 HS--S-HHHHHHC---HHHHHHHHHHHHHHHHHHHGSS--HHCCCCTCGGGC CS
    Cyclin_C  60 nspewtetlehytgyskedlkpcvelilellssapssklqavrrkyssskfh 111
                 + ++w ++  + +g+s+++++ c++ i +l+  + s k++  r ++ s+kf+
  CCE31339.1 244 EISTWMPSSFEAIGISEDQIRRCISDIGKLY--KDSDKYSGERYHFMSRKFE 293
                 667899*************************..4455666666666666654 PP

>> ExoD  Exopolysaccharide synthesis, ExoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   4.1e-05      0.37      73     117 ..     247     291 ..     243     295 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4.1e-05
        ExoD  73 pwLPkklarrsisrkklqkllkklrpllrrlerllrpRltfltsr 117
                  w+P  ++   is++++++ ++ + +l +  ++++ +R++f++++
  CCE31339.1 247 TWMPSSFEAIGISEDQIRRCISDIGKLYKDSDKYSGERYHFMSRK 291
                 7****************************************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1113  (0.0620782); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2422.85
//
Query:       CCE31340.1  [L=99]
Description: uncharacterized protein CPUR_05193 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-15   55.7   0.0    4.9e-15   55.6   0.0    1.0  1  PIF1      PIF1-like helicase


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   2.7e-19   4.9e-15     128     193 ..       4      68 ..       1      83 [. 0.85

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 2.7e-19
                 HHCT-...-SCCCC-EEEEE--TTS-----SSSSS---BGC...CSCHHHH--EEEE-S-STTTT. CS
        PIF1 128 dilkekeidkpFGGktvvlgGDfrQilPviekgsraeivaasikeSklWkevkvlkLtknmRllse 193
                 d++ +++ d   GG+ v + GDf QilPv+++gs  +iv+a++++S +W ++k l L kn+R++++
  CCE31340.1   4 DLRGTDD-DVLIGGVPVTFRGDFAQILPVVPHGSEGQIVNACLRKSFVWPRLKQLALRKNVRVQES 68 
                 5666555.8889***************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 759.29
//
Query:       CCE31341.1  [L=123]
Description: uncharacterized protein CPUR_05192 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 859.20
//
Query:       CCE31342.1  [L=871]
Description: related to conserved oligomeric golgi complex component 4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-124  414.7   0.0   4.2e-124  414.0   0.0    1.4  1  COG4      COG4 transport protein


Domain annotation for each model (and alignments):
>> COG4  COG4 transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  414.0   0.0  2.3e-128  4.2e-124       1     335 []     257     596 ..     257     596 .. 0.95

  Alignments for each domain:
  == domain 1  score: 414.0 bits;  conditional E-value: 2.3e-128
        COG4   1 LekaresLlelfleeFekAakenDkaeitrffkLFpligreeeGLdlYskyvceivaerarkelkseqskkdaetkagvfyanlltkLfeaiaqiveqh 99 
                 Le++resL++lfl+eFekAa ++D +++trffkLFp+igr ++GLd+Y++yvc++va +ar++lk++   +  ++k+g fy+n+ltkLfe+iaqiv++h
  CCE31342.1 257 LENSRESLCGLFLREFEKAAGDGDGTKVTRFFKLFPMIGRADVGLDVYGRYVCQGVAGTARATLKDSVGGQ--NRKEGYFYSNALTKLFEHIAQIVDSH 353
                 799***************************************************************98765..5679********************** PP

        COG4 100 qplvekyYgegkmlkvierLqkecDrqagiildtfeeerqldrllsdvksykfsflv........rgqfpaksseaaaasaktsnesseeeegvdprei 190
                 + lve++Yg gkm++vierLq e+D+q+giildt+++er +dr+++d+ksy+fsflv        r+++p+ +s++ ++    +n + +e+egv+++e+
  CCE31342.1 354 GGLVERHYGVGKMVRVIERLQMEADVQGGIILDTWSDERGVDRKITDIKSYPFSFLVqsvlsqtpRSGTPRINSPSLGG----NNPRLSEDEGVNMKEV 448
                 ************************************************************8777777777777777776....566777777******* PP

        COG4 191 dalleEislmlsrwelYsrFlaskleeeeeeeeeeeqeeelelpdllrssklskkvsqellssYvpLetfylrrsvekAiqldelpsl.......k..a 280
                 d ll+Ei++ml+rw+ Y+rFl++k+    ++   + ++ +l+lp ll +s+l +kvs +l+++Y++++tf++rrsvekA+qlde+p++       +  +
  CCE31342.1 449 DGLLSEIAVMLGRWSAYTRFLSGKC----MDA--NAEDPSLVLPGLLVKSNLYRKVSAKLTTPYNTMTTFFFRRSVEKAFQLDEYPTGlslslnkPveG 541
                 *************************....554..46789***********************************************999998876267* PP

        COG4 281 ssplissvvDDvfyilkkvlrralstgsvdvvsavvnavkrvlesdllgvlqrkl 335
                 s+p+i+++vDDv+yi+++v++++lst+++dvvs+v+++v rvl+sd++g++qrk+
  CCE31342.1 542 SPPFIITAVDDVMYIVNNVIQKSLSTSQRDVVSSVLPTVGRVLSSDFIGMIQRKM 596
                 ******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.67
# Mc/sec: 3919.30
//
Query:       CCE31343.1  [L=1075]
Description: probable calcium P-type ATPase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-47  159.2   0.1    7.2e-47  159.2   0.1    2.1  2  E1-E2_ATPase     E1-E2 ATPase
    3.8e-44  150.6   1.2    3.8e-44  150.6   1.2    1.9  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    2.8e-22   80.1   0.4    2.9e-21   76.8   0.2    2.8  2  Hydrolase        haloacid dehalogenase-like hydrolase
      3e-18   65.2   0.0      7e-18   64.1   0.0    1.7  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    2.9e-12   46.5   0.0    5.7e-12   45.6   0.0    1.5  1  Cation_ATPase    Cation transport ATPase (P-type)
    4.4e-05   23.4   0.7    0.00044   20.1   0.4    2.1  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.16   11.7   1.4       0.18   11.5   0.1    1.6  2  DUF5349          Family of unknown function (DUF5349)


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   0.7         7   1.8e+04     127     156 ..     118     147 ..     115     150 .. 0.44
   2 !  159.2   0.1   2.8e-50   7.2e-47      16     181 .]     221     424 ..     169     424 .. 0.97

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 7
                   HHHHHHHHHS-STTTSSTTHHHHHHHHHHH CS
  E1-E2_ATPase 127 lliallvflialllgkslaeallralallv 156
                   +l+++ + + +ll + + a +++ a++++v
    CCE31343.1 118 VLLLVSAGMSLLLGNLDDAVSITVAVTIVV 147
                   444444444444444444444444554444 PP

  == domain 2  score: 159.2 bits;  conditional E-value: 2.8e-50
                   EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-.....................................G-TTEE-TT- CS
  E1-E2_ATPase  16 eeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek.....................................ekgdmvfsGt 74 
                   +++ a +lvpGD+vl+ +gdr+paD+r+ +  + ++des LTGE +pv+                                      e+++ v++Gt
    CCE31343.1 221 TKVMAGQLVPGDLVLFTTGDRIPADIRVTKAADlTIDESNLTGETEPVRIttearsrrinteglnhlqipqlsapgsdknqygdaasEAHNVVYMGT 317
                   569999********************************************************************************99********* PP

                   EEEE-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHH CS
  E1-E2_ATPase  75 vvvsgeakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplal 171
                    v+sg  +++V atg +t++g+ia++v+ ++s ++plq  +d lg++l++++++++ l+ ++ +l gk+l e+++ +++l+vaaiP++Lp++v+++l
    CCE31343.1 318 LVTSGYGQGIVFATGGSTQFGTIATSVSGTESPRSPLQLSMDDLGGQLSKASFVVIGLISFVGWLQGKKLLEIFTISISLAVAAIPEGLPIIVTVTL 414
                   ************************************************************************************************* PP

                   HHHHHHHHHT CS
  E1-E2_ATPase 172 algarrlakk 181
                   alg+ r+ak+
    CCE31343.1 415 ALGVHRMAKH 424
                   ********97 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         1   2.7e+03      89     114 ..     323     348 ..     296     414 .. 0.46
   2 !  150.6   1.2   1.5e-47   3.8e-44       2     182 .]     885    1059 ..     884    1059 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1
  Cation_ATPase_C  89 yaqtmaFitlvlsqifnalnlrsrre 114
                      y+q ++F t   +q+  + ++ s +e
       CCE31343.1 323 YGQGIVFATGGSTQFGTIATSVSGTE 348
                      44444444444444444433333222 PP

  == domain 2  score: 150.6 bits;  conditional E-value: 1.5e-47
  Cation_ATPase_C    2 lplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenklssnyaqtm 93  
                        pl+a+qiLwin+++D+ pa +L++e+ ++d+m+rpPr++++ +++k++l+r+l+ ++++ + t+l++   +  +g+ +        +  tm
       CCE31343.1  885 TPLNAMQILWINIIMDGPPAQSLGVEKVDPDVMNRPPRRRNDAVLTKAVLTRVLTSAAIIMIGTMLIYRHEMMADGQVTR-------RDTTM 969 
                       69******************************************************************888875555444.......489** PP

  Cation_ATPase_C   94 aFitlvlsqifnalnlrsrreslfkfsglf..snkllllaillslllqvlivyvpglnavfgtaplsleewlialllalvvllvdelvKll 182 
                       +F+ +v++ +fnal++rs+++s+fk   +    n l+ +a+ ls++ q+l++y+p+l++vf+t+ ++l +++ +++l++ v++ del+K+l
       CCE31343.1  970 TFTCFVFFDMFNALSCRSESKSIFK-GEMGlfANNLFNWAVSLSVVCQLLVIYMPWLQEVFQTEAIGLGDLFRLVVLCSSVFWADELRKYL 1059
                       ************************9.555445*********************************************************96 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.4   8.7e+03     137     156 ..     233     253 ..     232     268 .. 0.76
   2 !   76.8   0.2   1.1e-24   2.9e-21       1     210 []     440     814 ..     440     814 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.4
                 EEEEESSEHHHHH.HHHHHTT CS
                 xxxxxxxxxxxxx.xxxxxxx RF
   Hydrolase 137 vvlltgdnpetae.raanqlG 156
                 +vl t +++ +a+ r+ + ++
  CCE31343.1 233 LVLFTTGDRIPADiRVTKAAD 253
                 799999999999999999988 PP

  == domain 2  score: 76.8 bits;  conditional E-value: 1.1e-24
                 SSEEEEESBTTTBCHHHHHHHHHHHH....................CHHHHHHHHHH..........HHCHHHHHHHHHHHHHHHHHHHHHHETTTE.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa....................alalaaaletg..........sehpigkalvaaakarsgaltgfatfigrg.. 67 
                 +++v+ Dk+GTLtt ++   + +                       +         +          ++  +++++++   a s  lt      grg  
  CCE31343.1 440 VNVVCTDKTGTLTTNHMTASEMWHFGaskpivvpsdseaieakttpT---------SlrimrigniaNNARLAQKYTESGAAASAVLT---STLGRGhv 526
                 699******************99999777777776664333333220.........23333222222333333333333333322222...23334466 PP

                 .....................................HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH.......................... CS
                 .....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
   Hydrolase  68 .....................................ayaigkpewltaldippdlgaaigsaqsqgrtvall.......................... 103
                                                      +     ++w+    i +d + + + a  +g  + +l                          
  CCE31343.1 527 atssrwvgqptdvamldmldkfeehdirdsvgprateTPFSSDRKWMGVT-IGSDSKGDKEYAYMKGAVEKVLtacstyldkdgreivldsarrqdala 624
                 77777788888888888888888888888888887774444444444444.555555555555555555555566666666666666666777777777 PP

                 .........................................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEH CS
                 .........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 .........................................................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnp 145
                                                                          +    +++ ++dp  ++p++   +++L + g++v+++tgd +
  CCE31343.1 625 aansmaskglrvlafasgqvsrpfrgrlgqngsrtatpgsenssdnaapisneevyrDLTFAGLVGMSDP--PRPGVSRSIRRLMRGGVKVIMITGDAE 721
                 999************************************************88888777888888888**..*************************** PP

                 HHHHHHHHHTT............GGGESEEEEHHCES...........................STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHH CS
                 xxxxxxxxxxx............xxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 146 etaeraanqlG............ddyfdaviasdiet...........................vakpspegkvaaireLqgkpeevamVGDgvnDaaa 205
                 +ta ++ +qlG            +            t                           +a  +p++k ++ir Lq ++  vam GDgvnDa+a
  CCE31343.1 722 ATALAIGKQLGmniavasqhsssQ-----------GTvrpvlrgdeidamsdedlavamqhttiFARTNPDHKMKIIRALQSRGDIVAMTGDGVNDAPA 809
                 ***********7554333333331...........332234433333334444455555555666666*************77777************* PP

                 HHHTT CS
                 xxxxx RF
   Hydrolase 206 laaAg 210
                 l++A+
  CCE31343.1 810 LKRAD 814
                 ***98 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   2.8e-21     7e-18       3      69 .]      61     127 ..      59     127 .. 0.96

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 2.8e-21
  Cation_ATPase_N   3 alsleevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69 
                       ++++e+++kL t+l++GLt  +a  rl  +GpNe+++ ++++lw +++kqf+ pl+ lLlv+a +s
       CCE31343.1  61 YMTPSEAAAKLRTSLTHGLTANDALTRLGDHGPNEIPHDEPEPLWLRFVKQFQEPLIVLLLVSAGMS 127
                      6899***********************************************************9876 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   2.2e-15   5.7e-12      17      90 ..     530     603 ..     496     604 .. 0.85

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 2.2e-15
  Cation_ATPase  17 vkllGnktEsALlvlaeklgldteelreetkkvqeipFnssrKrmsvvlkle.pekkvrlyvKGApeiilkrCth 90 
                       +G++t++A+l + +k+ ++++  ++  ++  e pF+s+rK+m+v +  + +  k  +y+KGA e +l  C++
     CCE31343.1 530 SRWVGQPTDVAMLDMLDKF-EEHDIRDSVGPRATETPFSSDRKWMGVTIGSDsKGDKEYAYMKGAVEKVLTACST 603
                    4579***************.8888888899******************999877778899*************97 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.11   2.9e+02      22      59 ..     701     738 ..     695     758 .. 0.88
   2 !   20.1   0.4   1.7e-07   0.00044     196     255 .]     787     847 ..     784     847 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
                  HHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEE CS
  Hydrolase_3  22 eaikklkekgikvviATGRslravlpvleelgldlpvi 59 
                  + i++l+  g+kv+  TG    ++l + ++lg++ +v 
   CCE31343.1 701 RSIRRLMRGGVKVIMITGDAEATALAIGKQLGMNIAVA 738
                  6899****************************996665 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.7e-07
                  HHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETT.S-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 196 akelnisleeviafGDgeNDieMLeaaglgvAmgn.aseevkkaAdyvtksnnedGVakal 255
                  +  l+   + v+  GDg ND + L++a++g+ mg  +++ +k+aAd++ ++ + + +++a+
   CCE31343.1 787 IRALQSRGDIVAMTGDGVNDAPALKRADIGISMGRhGTDVAKEAADMILTDDDFSTILRAI 847
                  56677777788999*******************95499999*******9998888888776 PP

>> DUF5349  Family of unknown function (DUF5349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     7e-05      0.18     182     238 ..      31      86 ..      23      90 .. 0.90
   2 ?   -3.7   0.1         3   7.6e+03     226     305 ..     659     744 ..     654     748 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7e-05
     DUF5349 182 fstsyepsnkspvltsstsssassydsseFdyilPsssaassstsatssssnnslnt 238
                   + y++ ++ p ++ +tss a+s+ s eF+y+ Ps+ aa++ ts+t +  +n + t
  CCE31343.1  31 VDPAYGNGPQRPRNVRTTSSRARSV-SDEFSYMTPSEAAAKLRTSLTHGLTANDALT 86 
                 568899999**************99.99********************999988776 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3
     DUF5349 226 satssssnnslntnvstsaslsgdllddlpva.ptasslvgdlsstetvsnl.....sasqallessaassslglsnslalqasns 305
                  at++s n+s n ++ +++ +  dl+ + +v+ +  + +  + s+ + +  +      +  a  +  a  ++lg++   a q+s+s
  CCE31343.1 659 TATPGSENSSDNAAPISNEEVYRDLTFAGLVGmSDPPRPGVSRSIRRLMRGGvkvimITGDAEATALAIGKQLGMNIAVASQHSSS 744
                 56777777777777777777777777776666444444433444444443334444334444445556667777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1075 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.80u 0.24s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 7327.57
//
Query:       CCE31344.1  [L=95]
Description: uncharacterized protein CPUR_05196 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.14   12.2   0.0    1.3  1  CorC_HlyC  Transporter associated domain


Domain annotation for each model (and alignments):
>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.6e-06      0.14      36      79 ..      27      72 ..      10      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.6e-06
                HHHHHHHH-S---TT-EEEEEET..TEEEEEEEEETTCEEEEEEEE CS
   CorC_HlyC 36 gGlllellgriPkegesvevdle..glrftVlemdgrrIkkvrvek 79
                gG +++++ ri k+ e+v   ++    r +++e ++ rI+++  ++
  CCE31344.1 27 GGNVMRAWRRINKKRETVSAVYNarATRREIMELSEERITRIGCRR 72
                899*************884444333699*************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 750.00
//
Query:       CCE31345.1  [L=617]
Description: related to double-strand-break repair protein rad21 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-38  131.1   0.1    3.3e-38  130.3   0.1    1.5  1  Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
      1e-09   37.5   0.0    2.4e-09   36.3   0.0    1.6  1  Rad21_Rec8    Conserved region of Rad21 / Rec8 like protein


Domain annotation for each model (and alignments):
>> Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   0.1   3.6e-42   3.3e-38       1     102 [.       1     101 [.       1     109 [. 0.91

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 3.6e-42
  Rad21_Rec8_N   1 MfysqellskkgplakvWlaAtlekklskkeilevniekaveeIlnp.eaplaLrlsgqLllGvvriyskkvkyllsDceealekikkafksikeak 96 
                   Mfys++ll+k+gpla+vWl A+le+klsk++il+ n++++ve+I++p +ap+aLrlsgqLllGvvriys+k++yll+Dc+ea++kik+af+s+   +
    CCE31345.1   1 MFYSETLLQKSGPLARVWLSANLERKLSKNHILQSNVTDSVEAIITPnQAPMALRLSGQLLLGVVRIYSRKTRYLLDDCNEAMMKIKMAFRSSG--N 95 
                   9*********************************************6488*****************************************764..4 PP

  Rad21_Rec8_N  97 idlpee 102
                    dl ++
    CCE31345.1  96 NDLAAN 101
                   555543 PP

>> Rad21_Rec8  Conserved region of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.7e-13   2.4e-09       3      41 ..     530     569 ..     528     576 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.7e-13
                 HHHTT-----.-----HHHHHHHHHHHHHHHHTSEEEEES CS
  Rad21_Rec8   3 kekdslsllp.agktRkeAArlFyelLvLatkgvIkvkQe 41 
                   +++ +llp + +t+ eA ++F+e LvLatk++Ikv+Q 
  CCE31345.1 530 NSVVFQNLLPeQQTTKAEATKMFFECLVLATKDAIKVEQG 569
                 56788899998899*************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4757.24
//
Query:       CCE31346.1  [L=115]
Description: related to beta-tubulin binding protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-23   81.6   4.0    5.2e-23   81.2   3.9    1.3  1  TBCA      Tubulin binding cofactor A
  ------ inclusion threshold ------
      0.099   12.5   2.3        4.2    7.3   0.2    2.3  2  NuA4      Histone acetyltransferase subunit NuA4


Domain annotation for each model (and alignments):
>> TBCA  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   3.9   5.8e-27   5.2e-23       1      81 [.       7      95 ..       7     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 5.8e-27
        TBCA  1 LkIktgvvkRlvKEeasYekEleeqearleklka.......dgded.eydlkkqeevleetkamipdlkkrlekavekLeelleeeeel 81
                L+I+t++v Rl+KE+asY+kEl +qea++ + ++       d+d++ e++lk+ ++++e+tka++ +lk+r+e+av kLe++++ +ee 
  CCE31346.1  7 LAIATSSVSRLLKEQASYHKELVDQEAQIVQQEKsikaggaDEDGNaEFMLKQSKTAIEQTKAVFGPLKQRIEEAVVKLEDQIALAEEA 95
                89**************************9999999******888899***********************************9988655 PP

>> NuA4  Histone acetyltransferase subunit NuA4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2   0.00047       4.2       4      29 ..      16      41 ..      13      46 .. 0.91
   2 ?    5.2   0.2    0.0021        19       9      28 ..      75      94 ..      57      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00047
        NuA4  4 ellkkkrelekelakleeqIydkEte 29
                 llk++ + +kel + e+qI ++E++
  CCE31346.1 16 RLLKEQASYHKELVDQEAQIVQQEKS 41
                6899999*****************86 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0021
        NuA4  9 krelekelakleeqIydkEt 28
                k+++e+ + kle+qI   E+
  CCE31346.1 75 KQRIEEAVVKLEDQIALAEE 94
                999************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 880.46
//
Query:       CCE31347.1  [L=348]
Description: uncharacterized protein CPUR_05199 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-44  150.7   5.2    2.6e-44  150.7   5.2    2.2  2  THOC7     Tho complex subunit 7
  ------ inclusion threshold ------
      0.023   13.8  12.1      0.039   13.1  12.1    1.3  1  CCDC144C  CCDC144C protein coiled-coil region
      0.037   12.6   8.9      0.052   12.1   8.9    1.1  1  FUSC      Fusaric acid resistance protein family
       0.15   12.7   6.6        1.6    9.4   3.0    2.6  2  YabA      Initiation control protein YabA
       0.29   10.4   4.1        3.6    6.7   0.9    2.2  2  TMPIT     TMPIT-like protein
        1.6    9.1  10.1        5.8    7.3   9.0    2.2  1  OmpH      Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7   5.2   8.6e-48   2.6e-44       2     132 .]      15     167 ..      15     167 .. 0.97
   2 ?    2.5   6.0     0.055   1.6e+02      56     116 ..     167     227 ..     165     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: 150.7 bits;  conditional E-value: 8.6e-48
       THOC7   2 eliksRLlnveerplkrltkrllklltsla.....................esteeeleqlkedllldfaafelsierlqllakanerereryeaekee 79 
                 el+k RL nvee+p+kr+tkrl++ +ts a                     ++ ++ +++lkedl+ldfaaf++s++rlq+l++an+rerery+a++++
  CCE31347.1  15 ELHKFRLFNVEEKPFKRITKRLSS-ITSAAstatkrkipsqtqptgddddsARAAAGQDNLKEDLTLDFAAFDSSVARLQFLHDANQRERERYAADQQR 112
                 79**********************.555556*******************988899******************************************* PP

       THOC7  80 ieseieavreeieelkaqLeearatranrkeydelaekItsnp..kpReeqeaql 132
                 i++e++avr+++ +l++qL+ arat+a+rk++d laekItsn+  +pRe+q a+l
  CCE31347.1 113 ILAECQAVRASNGQLREQLDGARATLAQRKKFDDLAEKITSNRllRPREDQLANL 167
                 ***************************************************9987 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.055
       THOC7  56 ierlqllakanerereryeaekeeieseieavreeieelkaqLeearatranrkeydelae 116
                 +++l+  +k  ere e y+   +e  ++   + ee   l+ q+ +++++ ++r+  +e+ e
  CCE31347.1 167 LAKLEEECKELERESETYKGTWKERREQFNRIMEEGMMLRRQIRDEKEEVDRREGMNEEGE 227
                 567777788899******************************************9999765 PP

>> CCDC144C  CCDC144C protein coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  12.1   1.3e-05     0.039     114     248 ..      92     220 ..      77     229 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
    CCDC144C 114 krdlelalqrerdewlrlqdklnfdvsnlkdknevLsqqLskaeskansLenelhetrdaLrektlllesvqrdlsqaqcqikeleqmyqneeekvnky 212
                  + l  a qrer+ +   q+++  +   ++ +n  L +qL  a + + +     ++  d+L ek    +++ r ++ + + + +le+ +++ e++ ++y
  CCE31347.1  92 LQFLHDANQRERERYAADQQRILAECQAVRASNGQLREQLDGARATLAQ-----RKKFDDLAEKI-TSNRLLRPREDQLANLAKLEEECKELERESETY 184
                 55567788************************************99876.....34457888874.557888999999********************* PP

    CCDC144C 213 iakqesleerlaqlqsenmlLrqqLedaqnkadake 248
                  +  +  +e++ ++ +e m+Lr+q+ d ++++d +e
  CCE31347.1 185 KGTWKERREQFNRIMEEGMMLRRQIRDEKEEVDRRE 220
                 *******************************99988 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   8.9   1.7e-05     0.052     231     349 ..      88     207 ..      55     210 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
        FUSC 231 llallsslarllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlralrrale.adadtaalllarlaellaelaqllaslraleaai 328
                  +a+l+ l++  +r r++ aa     + +lae++a   +a+  +l+++l+  ra l++ ++ ++ a+  t+ +ll+   ++la+la l +++++le++ 
  CCE31347.1  88 SVARLQFLHDANQRERERYAAD---QQRILAECQA--VRASNGQLREQLDGARATLAQRKKFDDlAEKITSNRLLRPREDQLANLAKLEEECKELERES 181
                 3456666666666666666655...7889999999..566999*************99999999999*******************************9 PP

        FUSC 329 aa.....arraerlarhrdhlaalln 349
                 ++     ++r+e++ r  + +++l+ 
  CCE31347.1 182 ETykgtwKERREQFNRIMEEGMMLRR 207
                 99999887777778888888888876 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.026        77      22      60 ..     101     139 ..      80     157 .. 0.69
   2 ?    9.4   3.0   0.00053       1.6       6      71 ..     163     228 ..     159     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.026
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....XXXXXXXX CS
        YabA  22 eeleelkeelaelleenaeLeleneklrerl.....eeeekkek 60 
                 +e e+  ++ +++l e +++++ n +lre+l     +      +
  CCE31347.1 101 RERERYAADQQRILAECQAVRASNGQLREQLdgaraT-----LA 139
                 55556667778999999*************9443320.....22 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00053
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXX CS
        YabA   6 lfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegke 71 
                  +++l++lee+ +el +e e+ k +++e  e+ +++  e   lr+++++e+++ ++++   +eg++
  CCE31347.1 163 QLANLAKLEEECKELERESETYKGTWKERREQFNRIMEEGMMLRRQIRDEKEEVDRREGMNEEGED 228
                 568899*****************************************8777777777766666655 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1    0.0063        19       6      78 ..      84     154 ..      80     162 .. 0.88
   2 ?    6.7   0.9    0.0012       3.6       4      60 ..     167     223 ..     164     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0063
       TMPIT   6 elekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelker 78 
                  + +++ +l+  ++  +++ e++++ q+++  e +  +    +l+++l+  ++++   +++++++l+e++ + 
  CCE31347.1  84 AFDSSVARLQFLHDANQRERERYAADQQRILAECQAVRASNGQLREQLDGARATL--AQRKKFDDLAEKITSN 154
                 56678889999999999*********************************99985..6888999999988765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0012
       TMPIT   4 weelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksv 60 
                 +++le+e+kele + ++yk + +e  ++ +++++e    ++++++ k+++++ +   
  CCE31347.1 167 LAKLEEECKELERESETYKGTWKERREQFNRIMEEGMMLRRQIRDEKEEVDRREGMN 223
                 689******************************************999999876553 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.0    0.0019       5.8       6      96 ..     109     200 ..     105     221 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0019
                 -HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.....-HHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHH CS
        OmpH   6 dvqkileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle....keekeqelqkkeqelqqkqqqka..qelqkkqqellkpild 96 
                 d q+il+e+++ +a + ql ++    +a+l+ ++k++++l+e++    ++      +e++   l+k+e+e +++ ++ +  +   k+++e +++i++
  CCE31347.1 109 DQQRILAECQAVRASNGQLREQLDGARATLA-QRKKFDDLAEKIT---SN-RllrpREDQLANLAKLEEECKELERESEtyKGTWKERREQFNRIME 200
                 89****************************9.8999********6...33.2245666666668888888887444444554455555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1174  (0.0654805); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2542.77
//
Query:       CCE31348.1  [L=454]
Description: uncharacterized protein CPUR_05200 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-10   39.6  32.9    8.4e-06   25.6   3.9    5.3  5  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    8.7e-06   25.6  31.7    0.00067   19.6   3.8    5.9  5  zf_CCCH_4  Zinc finger domain
    0.00016   21.4   5.8     0.0074   16.1   0.1    4.1  4  zf-CCCH_4  CCCH-type zinc finger
  ------ inclusion threshold ------
      0.051   14.3   0.9      0.051   14.3   0.9    5.4  6  Torus      Torus domain
       0.45   10.3  11.6       0.32   10.8   0.3    3.7  4  zf-C3H1    Putative zinc-finger domain
        1.4    9.1  22.1          2    8.7   7.7    3.7  3  zf-CCCH_3  Zinc-finger containing family


Domain annotation for each model (and alignments):
>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   3.9   2.8e-09   8.4e-06       2      27 .]     265     290 ..     264     290 .. 0.93
   2 !   17.3   0.1   1.1e-06    0.0032       2      21 ..     292     311 ..     291     316 .. 0.94
   3 !    7.7   2.9    0.0011       3.3       3      27 .]     322     344 ..     320     344 .. 0.91
   4 ?   -1.6   2.2      0.96   2.9e+03      12      25 ..     358     371 ..     351     373 .. 0.80
   5 !    7.0   0.1    0.0019       5.7       5      16 ..     374     385 ..     372     385 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.8e-09
                 HCHCBCHHHHHS--TTGGG-SSBSCS CS
     zf-CCCH   2 ktelCrffmrtGyCkyGdrCkFaHgq 27 
                 k  +C++f+ tG+C+ G++C++ H++
  CCE31348.1 265 KSQPCKTFSTTGSCHKGPSCRYQHDP 290
                 789*********************85 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.1e-06
                 HCHCBCHHHHHS--TTGGG- CS
     zf-CCCH   2 ktelCrffmrtGyCkyGdrC 21 
                 k+++Cr+f++ G C+ G++C
  CCE31348.1 292 KVAICRDFLKDGKCPSGESC 311
                 889***************** PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0011
                 CHCBCHHHHHS--TTGGG-SSBSCS CS
     zf-CCCH   3 telCrffmrtGyCkyGdrCkFaHgq 27 
                 ++ C +++r G+C   ++C++ H++
  CCE31348.1 322 MPDCLHYAR-GHCAN-PNCPYTHSK 344
                 789******.*****.******985 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.96
                 HS--TTGGG-SSBS CS
     zf-CCCH  12 tGyCkyGdrCkFaH 25 
                 +G+C  G+ C   H
  CCE31348.1 358 YGFCDQGAHCAQRH 371
                 69********7655 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0019
                 CBCHHHHHS--T CS
     zf-CCCH   5 lCrffmrtGyCk 16 
                 +C++f+ tG+Ck
  CCE31348.1 374 ECPDFSNTGSCK 385
                 7**********8 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   3.8   2.2e-07   0.00067       1      19 []     269     288 ..     269     288 .. 0.99
   2 !   14.9   0.6     7e-06     0.021       1      15 [.     296     311 ..     296     312 .. 0.99
   3 ?    4.2   0.9     0.017        49       1      19 []     325     342 ..     325     342 .. 0.75
   4 ?   -0.2   1.8      0.39   1.2e+03       7      15 ..     359     367 ..     352     368 .. 0.86
   5 ?    3.4   0.1     0.029        88       1      10 [.     375     385 ..     375     385 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.2e-07
   zf_CCCH_4   1 Ckfflq.GtCkkGdkCrFaH 19 
                 Ck f + G+C kG +Cr+ H
  CCE31348.1 269 CKTFSTtGSCHKGPSCRYQH 288
                 *******************9 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 7e-06
   zf_CCCH_4   1 Ckfflq.GtCkkGdkC 15 
                 C+ fl+ G+C+ G++C
  CCE31348.1 296 CRDFLKdGKCPSGESC 311
                 **************** PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.017
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 C ++++G C +  +C++ H
  CCE31348.1 325 CLHYARGHCAN-PNCPYTH 342
                 88999999984.6666655 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.39
   zf_CCCH_4   7 GtCkkGdkC 15 
                 G C  G++C
  CCE31348.1 359 GFCDQGAHC 367
                 99******* PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.029
   zf_CCCH_4   1 Ckfflq.GtCk 10 
                 C  f + G+Ck
  CCE31348.1 375 CPDFSNtGSCK 385
                 9*********7 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.8   4.8e-06     0.014       2      22 .]     268     289 ..     267     289 .. 0.94
   2 !   16.1   0.1   2.5e-06    0.0074       2      22 .]     295     316 ..     294     316 .. 0.94
   3 ?   -1.1   1.5      0.59   1.8e+03       3      19 ..     325     340 ..     325     342 .. 0.63
   4 ?   -1.3   0.1      0.67     2e+03       3      12 ..     375     385 ..     375     385 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.8e-06
   zf-CCCH_4   2 lCpyfa.kGsCrfGdnCrFsHd 22 
                 +C+ f  +GsC  G+ Cr+ Hd
  CCE31348.1 268 PCKTFStTGSCHKGPSCRYQHD 289
                 8999998**************9 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.5e-06
   zf-CCCH_4   2 lCpyfakG.sCrfGdnCrFsHd 22 
                 +C+ f+k+ +C  G+ C  sHd
  CCE31348.1 295 ICRDFLKDgKCPSGESCDLSHD 316
                 7*****877************9 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.59
   zf-CCCH_4   3 CpyfakGsCrfGdnCrF 19 
                 C ++a+G C   +nC +
  CCE31348.1 325 CLHYARGHCAN-PNCPY 340
                 56888888865.45555 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.67
   zf-CCCH_4   3 Cpyfa.kGsCr 12 
                 Cp f  +GsC+
  CCE31348.1 375 CPDFSnTGSCK 385
                 88888899**6 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.5         1     3e+03      13      61 ..     148     171 ..     121     187 .. 0.50
   2 ?   14.3   0.9   1.7e-05     0.051      51      92 ..     252     289 ..     221     295 .. 0.67
   3 ?    6.7   0.0    0.0039        12      71      92 ..     294     316 ..     289     324 .. 0.79
   4 ?    9.9   1.4    0.0004       1.2      72      92 ..     324     343 ..     317     350 .. 0.87
   5 ?   -3.0   9.1       4.1   1.2e+04      62      92 ..     341     372 ..     340     389 .. 0.81
   6 ?   -2.1   3.6       2.1   6.4e+03      59      92 ..     363     394 ..     360     397 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1
                 --------SSS-----TTSS----S-THHHHS-----S----HHHH--- CS
       Torus  13 eelksekeeqegeeyNiWynkwsgeekekkkkskekaktrcnikkdsGy 61 
                 ++l                         k++k++eka+++  ++ ++G+
  CCE31348.1 148 KKL-------------------------KSRKNHEKAQFNDYLRSQAGM 171
                 222.........................222222333333333333333 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.7e-05
                 ----HHHH----HHHHSTT--B-HHHH.HT--SSGGG-SSB-S CS
       Torus  51 trcnikkdsGytkadkekesyfClfFa.rGlCakGkkCeylHr 92 
                   ++++ +sG++k     +s  C  F+  G C+kG +C+y H+
  CCE31348.1 252 AMLTMSSRSGTHK-----KSQPCKTFStTGSCHKGPSCRYQHD 289
                 4444444555444.....44567777537*************7 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0039
                 -B-HHHHH.T--SSGGG-SSB-S CS
       Torus  71 yfClfFar.GlCakGkkCeylHr 92 
                  +C  F + G C++G++C+  H+
  CCE31348.1 294 AICRDFLKdGKCPSGESCDLSHD 316
                 678777655************97 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.0004
                 B-HHHHHT--SSGGG-SSB-S CS
       Torus  72 fClfFarGlCakGkkCeylHr 92 
                  Cl++arG Ca+  +C y+H+
  CCE31348.1 324 DCLHYARGHCAN-PNCPYTHS 343
                 5*********98.79*****6 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 4.1
                 -HHHHSTT--B-HHHH.HT--SSGGG-SSB-S CS
       Torus  62 tkadkekesyfClfFa.rGlCakGkkCeylHr 92 
                 t+++ +  + +C  F   G+C +G++C+  H 
  CCE31348.1 341 THSKAAPCALVCEAFGfYGFCDQGAHCAQRHV 372
                 667777788999999747*********99995 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 2.1
                 ----HHHHSTT--B-HHHHHT--SSGGG-SSB-S CS
       Torus  59 sGytkadkekesyfClfFarGlCakGkkCeylHr 92 
                 +G + a+  ++ + C  F+    +k k C+ lHr
  CCE31348.1 363 QGAHCAQ--RHVFECPDFSNTGSCKTKGCKLLHR 394
                 4555554..3467788888766666788888887 PP

>> zf-C3H1  Putative zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00011      0.32       6      20 ..     274     288 ..     272     288 .. 0.92
   2 ?   -0.7   0.2      0.41   1.2e+03       8      20 ..     303     315 ..     300     315 .. 0.77
   3 ?    5.5   0.1    0.0048        14       8      20 ..     330     342 ..     328     342 .. 0.86
   4 ?   -3.1   0.1       2.3     7e+03       8      20 ..     382     393 ..     381     393 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
     zf-C3H1   6 laGGvCnD.psCefQH 20 
                 ++G  C + psC++QH
  CCE31348.1 274 TTG-SCHKgPSCRYQH 288
                 678.************ PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.41
     zf-C3H1   8 GGvCnD.psCefQH 20 
                 G +C+  +sC   H
  CCE31348.1 303 G-KCPSgESCDLSH 315
                 4.999888887666 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0048
     zf-C3H1   8 GGvCnDpsCefQH 20 
                  G C +p+C++ H
  CCE31348.1 330 RGHCANPNCPYTH 342
                 569*******988 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2.3
     zf-C3H1   8 GGvCnDpsCefQH 20 
                 G  C+ + C+  H
  CCE31348.1 382 G-SCKTKGCKLLH 393
                 5.89877787666 PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   7.7   0.00067         2      12      86 ..     274     344 ..     262     345 .. 0.73
   2 ?    4.7   7.2     0.012        35       4      54 ..     321     371 ..     318     372 .. 0.80
   3 ?    1.7   6.0     0.098   2.9e+02      10      56 ..     355     395 ..     352     404 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00067
   zf-CCCH_3  12 yystctkGdscpfrheeaalGsetvc.tlWqegrclr.evckfrhmeidkkrkeipcywenqpaGcqklhcaflhek 86 
                     c+kG sc ++h ++ +    +c  + ++g+c + e c + h    ++  +     +   + c  ++c++ h+k
  CCE31348.1 274 TTGSCHKGPSCRYQHDPTKV---AICrDFLKDGKCPSgESCDLSHDTTPERMPD---CLHYARGHCANPNCPYTHSK 344
                 3457*************988...56725789****75389**999766655554...45556788999999999986 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.012
   zf-CCCH_3   4 kgddcyffyystctkGdscpfrheeaalGsetvctlWq.egrclr.evckfrh 54 
                 +  dc  +    c+   +cp+ h++aa  +  vc+++   g c + ++c  rh
  CCE31348.1 321 RMPDCLHYARGHCAN-PNCPYTHSKAAP-CALVCEAFGfYGFCDQgAHCAQRH 371
                 6679*9999999997.57*******996.999999885368887636899888 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.098
   zf-CCCH_3  10 ffyystctkGdscpfrheeaalGsetvctlWqegrclrevckfrhme 56 
                 f +y  c +G +c+ rh            + + g c  + ck+ h e
  CCE31348.1 355 FGFYGFCDQGAHCAQRHVFEC------PDFSNTGSCKTKGCKLLHRE 395
                 679**************7432......24556677777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1041  (0.0580624); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3128.44
//
Query:       CCE31349.1  [L=399]
Description: uncharacterized protein CPUR_05201 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-13   49.9   8.3    0.00011   22.7   0.5    4.0  4  Sel1      Sel1 repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.28   5.1e+03      20      31 ..     215     226 ..     212     229 .. 0.81
   2 !   12.5   0.0   1.1e-05      0.19       4      36 ..     252     282 ..     249     283 .. 0.82
   3 !   22.7   0.5   6.4e-09   0.00011       3      38 .]     308     341 ..     306     341 .. 0.95
   4 !   16.9   0.8   4.2e-07    0.0076       2      38 .]     343     377 ..     342     377 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.28
        Sel1  20 pkDpekAiewye 31 
                 + D+++Ai++ e
  CCE31349.1 215 DEDIQEAIRLHE 226
                 6699****9876 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.1e-05
        Sel1   4 myrLGmfylylnGlgvpkDpekAiewyekAAeq 36 
                 +  +G  +++ +G g ++D  +A++++  AA++
  CCE31349.1 252 QVLYG--LALRHGWGCEPDLPQAVKYLTAAASN 282
                 55556..4459999*****************86 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 6.4e-09
        Sel1   3 AmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 A y L+   ++ +G g+++D   A+++ye AA++Gd
  CCE31349.1 308 AIYELA--NCFRHGWGIERDAFAARQYYETAANLGD 341
                 89****..999***********************97 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 4.2e-07
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 +Am++ +   ++++G g +kD+  A ++y++A ++G+
  CCE31349.1 343 DAMNDAA--WCFEHGFGGKKDKFTAARYYRLAEAAGN 377
                 79*****..***********************88886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2823.36
//
Query:       CCE31350.1  [L=621]
Description: uncharacterized protein CPUR_05202 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-11   42.7  15.5    5.9e-11   42.3  12.7    2.2  2  bZIP_1         bZIP transcription factor
    1.9e-08   34.2   9.5    1.9e-08   34.2   9.5    2.2  2  bZIP_2         Basic region leucine zipper
    1.7e-05   25.2  11.8    1.7e-05   25.2  11.8    2.4  3  bZIP_Maf       bZIP Maf transcription factor
     0.0059   17.0   3.2      0.018   15.5   3.2    1.8  1  Fungal_TACC    Fungal Transforming acidic coiled-coil (TACC) 
  ------ inclusion threshold ------
      0.052   13.4   4.5       0.18   11.7   4.5    1.9  1  GIT_CC         GIT coiled-coil Rho guanine nucleotide exchang
       0.19   12.4   3.5       0.44   11.2   3.5    1.6  1  SPT6_acidic    Acidic N-terminal SPT6
       0.21   12.1   4.9       0.67   10.4   2.1    2.8  2  UPF0449        Uncharacterised protein family UPF0449
        1.1    9.5   7.2         23    5.2   4.1    2.9  2  MbeD_MobD      MbeD/MobD like
        2.1    7.1  10.1       0.12   11.2   4.9    1.6  2  Fmp27_WPPW     RNA pol II promoter Fmp27 protein domain
        2.9    7.9  14.3       0.32   11.0   8.8    2.2  2  Mito_fiss_reg  Mitochondrial fission regulator
          5    7.2  16.5       0.83    9.8  12.5    1.7  2  Mod_r          Modifier of rudimentary (Mod(r)) protein


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3  12.7   3.6e-14   5.9e-11       2      63 ..     240     301 ..     239     302 .. 0.96
   2 ?    0.5   0.0       0.4   6.5e+02      27      45 ..     325     343 ..     323     346 .. 0.71

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 3.6e-14
                 XXXXXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   2 kelKrekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevekLkskv 63 
                 kelK+ kr+++NR aA  sRqRK++ +++Le++ k+L + N+ L +el +lk +ve L +++
  CCE31350.1 240 KELKQHKRLLRNRQAALDSRQRKKQHTDRLEEENKELLSVNTGLEQELASLKSQVEMLTQEK 301
                 89******************************************************998876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHHHHHHH CS
      bZIP_1  27 eieeLerrvkaLekeNksL 45 
                 e++eL ++v++L++  + L
  CCE31350.1 325 ETAELRKKVAVLTNHVQRL 343
                 5678888888888766555 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   9.5   1.2e-11   1.9e-08       3      52 ..     241     291 ..     239     300 .. 0.94
   2 ?   -0.5   0.0      0.81   1.3e+03      27      44 ..     326     343 ..     323     350 .. 0.64

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.2e-11
                 XXXXXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   3 deyrerRr.kNreAarrsRekkkakeeeleervkeLeeeNaqLrqkveqLe 52 
                 + + ++R  +Nr+Aa  sR++kk+++  lee++keL + N  L+q++++L+
  CCE31350.1 241 ELKQHKRLlRNRQAALDSRQRKKQHTDRLEEENKELLSVNTGLEQELASLK 291
                 67899*******************************************998 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.81
                 HHHHHHHHHHHHHHHHHH CS
      bZIP_2  27 eeeleervkeLeeeNaqL 44 
                 ++el ++v  L++  ++L
  CCE31350.1 326 TAELRKKVAVLTNHVQRL 343
                 566666666666666666 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2  11.8   1.1e-08   1.7e-05      22      89 ..     235     302 ..     223     310 .. 0.88
   2 ?   -1.9   0.0       3.1   5.1e+03      63      83 ..     325     345 ..     305     352 .. 0.48
   3 ?   -2.4   0.2       4.3   7.1e+03      13      13 ..     540     540 ..     515     588 .. 0.57

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.1e-08
    bZIP_Maf  22 teeeverLKqrRRrlKNrgyakscrkrrlqqkeelekekeeleeelerlqqelsrlrqekdalkrkne 89 
                  e e ++LKq  R l+Nr +a ++r+r+ q ++ le+e++el   +  l+qel+ l+ + + l ++  
  CCE31350.1 235 NESETKELKQHKRLLRNRQAALDSRQRKKQHTDRLEEENKELLSVNTGLEQELASLKSQVEMLTQEKT 302
                 466899************************************99999999999999999888877655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.1
    bZIP_Maf  63 leeelerlqqelsrlrqekda 83 
                    el++ ++ l+ + q++d 
  CCE31350.1 325 ETAELRKKVAVLTNHVQRLDH 345
                 333333333333333333333 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.3
    bZIP_Maf  13 E 13 
                  
  CCE31350.1 540 Q 540
                 2 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   3.2   1.1e-05     0.018      29      76 ..     262     309 ..     257     310 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
  Fungal_TACC  29 kkgyeakyqkkldklelenkslkqeieqLkkqleaerkEKqeLlklld 76 
                  kk++  + +++ ++l   n +l+qe+ +Lk+q+e+ ++EK++L++ +d
   CCE31350.1 262 KKQHTDRLEEENKELLSVNTGLEQELASLKSQVEMLTQEKTNLMSCVD 309
                  788888999999999999*************************99887 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.5   0.00011      0.18      28      63 ..     269     304 ..     262     306 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
      GIT_CC  28 seakiqqLlkvNtslsdelrlLQskvqkLqaeNaql 63 
                  e   ++Ll vNt l++el+ L s+v+ L +e ++l
  CCE31350.1 269 LEEENKELLSVNTGLEQELASLKSQVEMLTQEKTNL 304
                 5666789*************************9998 PP

>> SPT6_acidic  Acidic N-terminal SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   3.5   0.00027      0.44      24      75 ..     233     287 ..     217     300 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
  SPT6_acidic  24 ddeeeeeeeese.e...eeekkrrkkkkkrreeeedaLdedDldLieentgvkvkr 75 
                    +e+e +e ++ +   ++++     +++++ ++ d+L+e++ +L+  ntg +++ 
   CCE31350.1 233 STNESETKELKQhKrllRNRQAALDSRQRKK-QHTDRLEEENKELLSVNTGLEQEL 287
                  4333333333332244422222222222222.3458***************98875 PP

>> UPF0449  Uncharacterised protein family UPF0449
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.1   0.00041      0.67      48      97 ..     257     306 ..     194     310 .. 0.79
   2 ?    1.2   0.0      0.32   5.2e+02      11      28 ..     439     456 ..     434     562 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00041
     UPF0449  48 seeedleaeveelYeqvrtylelnerLeeakeeLkqkceeLktageeLee 97 
                  + +  +++ ++l e+ +++l++n+ Le++  +Lk+++e L +  ++L  
  CCE31350.1 257 DSRQRKKQHTDRLEEENKELLSVNTGLEQELASLKSQVEMLTQEKTNLMS 306
                 3455566779999999*************************999998865 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.32
     UPF0449  11 epPtveqileDvenaped 28 
                 ++Pt+  + eD++ a + 
  CCE31350.1 439 TMPTIPRVSEDIRAASAT 456
                 589999******999765 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   4.1     0.014        23      11      69 ..     255     312 ..     243     313 .. 0.83
   2 ?    4.1   0.1     0.031        51      43      64 ..     325     346 ..     316     351 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.014
   MbeD_MobD  11 AlEqLQqdYeqrlqeWesafaelqrmfeltqrenaaLseqvtgLsqQVesLseqvrRls 69 
                 Al++ Q++ +q+ +  e+  +el  +    ++e+a L+ qv+ L+q   +L   v+R +
  CCE31350.1 255 ALDSRQRK-KQHTDRLEEENKELLSVNTGLEQELASLKSQVEMLTQEKTNLMSCVDRVT 312
                 66666665.5666777888888888888899*********************9999986 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.031
   MbeD_MobD  43 enaaLseqvtgLsqQVesLseq 64 
                 e a L+++v  L+  V++L +q
  CCE31350.1 325 ETAELRKKVAVLTNHVQRLDHQ 346
                 7899**************9987 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.9   7.3e-05      0.12     170     245 ..     243     326 ..     222     401 .. 0.78
   2 ?   -4.0   0.2         3   4.8e+03     213     242 ..     548     577 ..     525     588 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.3e-05
  Fmp27_WPPW 170 rvqkelleeRleeleeqie..kleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesse......e 245
                 +  k+ll++R++ l+++ +  +++++lee +++  + ++ l++e+ +l++++++l ++++ l + +++++ ++e++       +
  CCE31350.1 243 KQHKRLLRNRQAALDSRQRkkQHTDRLEEENKELLSVNTGLEQELASLKSQVEMLTQEKTNLMSCVDRVTMEKEDAIrastieT 326
                 45689*********97654126777788888887777*********************************99985554443330 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3
  Fmp27_WPPW 213 eelekeikelkeklefletlledlkesees 242
                 + l++ +++ +++++ l ++l  +++ +++
  CCE31350.1 548 DFLSDSLDTSQQSRKNLADALATMRAASKN 577
                 445555555555555555555555555443 PP

>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.4   2.3e+03     181     218 ..     179     213 ..     128     229 .. 0.58
   2 ?   11.0   8.8    0.0002      0.32      77     148 ..     235     306 ..     219     399 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
  Mito_fiss_reg 181 ppppppppippespsvldssnsaielikqrrgakktss 218
                      p   +p  ++  ++++   sa ++ ++ +g +k+++
     CCE31350.1 179 ETP--NQP-ISKKRKTCSPVFSARDVLRKGSGIRKKNA 213
                    222..222.34566777777788887777777766644 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0002
  Mito_fiss_reg  77 rkkleeekleffekllkrqdslpslrreekkvksdlkaneeAlkkiaaLedELakLRaQIAkIVaaqeasns 148
                    ++++++e ++  + l +rq+ l s +r++++++  +  n+e l+  + Le+ELa+L++Q+ ++ + +++  s
     CCE31350.1 235 NESETKELKQHKRLLRNRQAALDSRQRKKQHTDRLEEENKELLSVNTGLEQELASLKSQVEMLTQEKTNLMS 306
                    444556666777888899999999999999999999***********************9987554444333 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  12.5   0.00051      0.83       6      94 ..     237     327 ..     232     344 .. 0.86
   2 ?   -2.9   0.1       4.2   6.8e+03      26      43 ..     555     572 ..     545     586 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00051
       Mod_r   6 eeLqelledeeklealvktlpevkqlkeekeellaeneslaeknlslepeleelrselqekleelkelekefeekeqeldell..qkfspd 94 
                 +e +el + + +l+++   l++ ++ k++ + l++en++l++ n  le+el  l+s+++   +e ++l++ +++ + e ++++  +    +
  CCE31350.1 237 SETKELKQHKRLLRNRQAALDSRQRKKQHTDRLEEENKELLSVNTGLEQELASLKSQVEMLTQEKTNLMSCVDRVTMEKEDAIraSTIETA 327
                 56678889999999999999999******************************************************99999844444444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.2
       Mod_r  26 pevkqlkeekeellaene 43 
                 ++ +q ++++ ++la+ +
  CCE31350.1 555 DTSQQSRKNLADALATMR 572
                 333444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1630  (0.0909142); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4237.79
//
Query:       CCE31351.1  [L=274]
Description: related to MOB2 protein, required for maintenance in ploidy [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-42  143.5   0.0    1.1e-41  142.7   0.0    1.4  1  Mob1_phocein  Mob1/phocein family


Domain annotation for each model (and alignments):
>> Mob1_phocein  Mob1/phocein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   0.0   6.1e-46   1.1e-41       4     169 .]      34     235 ..      31     235 .. 0.94

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 6.1e-46
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein   4 lgsgdlkeavklPkgedlneWlavhvvdffneinllygtise.......fcteqscptmsagpkyeYlwadeevkkpvklsApeYidllmdwiesql 93 
                   + +g++ ++ + Pk +++ eW+a++vv+ ++++  ++ +++e       +c++ scp+msag + +++w +++ ++pv+l+A eY++l+  wi+ ++
    CCE31351.1  34 IVKGNFMTLSARPKTVEQGEWIAHQVVEHYRNLWNFVRVVHEkeddgtsICNAASCPRMSAGASHSFTWLNNR-REPVELPACEYMTLMQRWISGKI 129
                   6789*****************************99999987534556668*********************75.*********************** PP

                   xx.............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein  94 nd.............................lfpskagspfpknflkvvkkilkrlfrvyaHiYihHfee.iaeleleahlntcfkhfvlfvkeFkL 160
                   +d                                  + s fp++f ++++ i++++frvy+H+Y++Hf+e + +l+le++ln+cf hf+l ++  ++
    CCE31351.1 130 DDpsifptdpcgvsyapsptnatatsplpnsGDHVGKRSGFPDKFFDICQMIFRQMFRVYSHLYWAHFTEpFYHLNLEKQLNSCFSHFLLTATALDM 226
                   ************************999998877777779*****************************999************************** PP

                   xxxxxxxxx RF
  Mob1_phocein 161 idkkelepl 169
                   ++ +elep+
    CCE31351.1 227 LKPQELEPM 235
                   *******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1924.47
//
Query:       CCE31352.1  [L=606]
Description: related to Na+/H+ antiporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-26   91.7  38.4    1.3e-23   83.4  23.8    3.1  3  Na_H_Exchanger  Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4  23.8   7.4e-28   1.3e-23      15     250 ..      36     284 ..      17     298 .. 0.79
   2 !   10.1   0.9   1.3e-05      0.24     267     325 ..     351     411 ..     332     422 .. 0.76
   3 !    7.6   0.5   7.9e-05       1.4     326     379 ..     517     578 ..     510     580 .. 0.88

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 7.4e-28
                     HHHTTSXHHHHHHHHHHHHTTTTTS......HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHHHHHH.HHTXTTCH CS
  Na_H_Exchanger  15 arrlklpeivgliiaGlllGpsglglieps.eedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliGlllylllilgipl 108
                     + ++    ++g+i++G+  G  gl ++e+s e+ +  l  lgl ll+++ Gl++ l++lr+n + ++++a++g+ i+  l +++l    + + + 
      CCE31352.1  36 LDKFLYCGLIGQILLGVAWGIPGLRWLESSvETTIVQLGYLGLLLLVYEGGLSTCLKSLRANVWMSMAVAVTGISIPSGL-SFVLMR--LTNATP 127
                     5666666789**********************************************************************.665553..4789** PP

                     HHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger 109 leallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvavgglllglvigwllrl 203
                     l+++++ga ls t+++++ ++l  +g++++rlg +l  +++++D+v++vl++v+  l k   g+ ++++ ++  +lv +++++l+ l+  +l+r 
      CCE31352.1 128 LQCFAAGASLSSTSLGTTFTVLGTSGLTRSRLGVILTTAAMMDDVVGLVLVQVISNLGK--EGASITASIVIRPLLVSVGFIVLTPLLCLFLVRP 220
                     *********************************************************94..4444444444444444444444444444444444 PP

                     HHHHS..............CTHHHHHHHHHHHHHHHHHHHHHTS.XXXHHHHHHHHHHHHH..H CS
  Na_H_Exchanger 204 itrft..............dddrelevllvlllallaallaell.gvsgilgaflaGlvls..e 250
                     + r++                 +e   llv  l+ll + ++ ++ g s++++a +aG+ +s  +
      CCE31352.1 221 LMRRIsqvrkrlgpgacsrFLASEHLALLVHTLILLGYVIGASFaGTSNLFAAYIAGASVSwwD 284
                     4444445558999**999866666666666666666677766666***************9542 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 1.3e-05
                     HHHHHHHHHHHHHHSXHHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTX...SSXHHHH CS
  Na_H_Exchanger 267 glfnplfFvlvGlsldlkvlnnhlsvlilvllilvaillgrilavflllrll...glslrea 325
                      ++ p+fF+++G s++++ ++ + + ++  ++   +++l++++ +  l+r++     s+++a
      CCE31352.1 351 RILKPFFFASIGFSIPITKMF-SGDIVWKGFVYAMLMILAKLACGIWLVRISmslPASWKTA 411
                     5789************99996.5555555555555555899999999998887665555554 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 7.9e-05
                     HHCCCCSS.BHHHHHHHHHHHHHHXHHHH........TTSSTTTCSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger 326 liigfgglqrgavalalaalgpalgllar........elyallivvvlftvlvqGlslkpll 379
                      iig +++ rg++ + + +++++ ++ ++        +l+ ++++++++ +++ +l +  l+
      CCE31352.1 517 SIIGCAMVARGEIGFLISSIAESNNIFSAssgrrstsDLFLIVTWAIVLCTILGPLAVGLLV 578
                     58999*******************99999999999989999999999999998888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 4302.42
//
Query:       CCE31353.1  [L=181]
Description: uncharacterized protein CPUR_05205 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.24   10.9   0.0       0.33   10.5   0.0    1.2  1  Methyltransf_22  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_22  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   1.8e-05      0.33      21      82 ..      65     126 ..      59     140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 1.8e-05
  Methyltransf_22  21 rlkskalsfeqyvnpknPnqgrekakawylenlePeftcqqekrvGrnGdGpkWvcdPhrlk 82 
                       l ++a+ f++     + ++g+ k+   yl++++ +f   q++   ++G   +W c   r++
       CCE31353.1  65 VLDKRARQFSKTIALPQSTNGEVKPPSIYLDEVRLDFIMAQKQVNKGRGMVTQWYCKSLRFT 126
                      5788999*******999*********************9887777779********998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1342.41
//
Query:       CCE31354.1  [L=175]
Description: uncharacterized protein CPUR_05206 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.089   12.7   0.0       0.12   12.2   0.0    1.3  1  2_5_RNA_ligase2  2'-5' RNA ligase superfamily


Domain annotation for each model (and alignments):
>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.9e-06      0.12      21      52 ..      21      52 ..      13      95 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.9e-06
  2_5_RNA_ligase2 21 yprwppHitLlypfvededladlaellsrlak 52
                      +rw+pH+t + pf + ++l+++ ++l++  +
       CCE31354.1 21 SSRWRPHLTFKMPFLTLKTLPKWLSMLEARQE 52
                     68******************999998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1346.80
//
Query:       CCE31355.1  [L=418]
Description: uncharacterized protein CPUR_05207 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-32  113.1   0.6    4.9e-32  111.0   0.0    2.0  2  Leo1      Leo1-like protein


Domain annotation for each model (and alignments):
>> Leo1  Leo1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   0.0   2.8e-36   4.9e-32       2     165 .]      92     257 ..      91     257 .. 0.94
   2 ?   -0.6   0.7     0.056     1e+03      33      50 ..     365     387 ..     336     401 .. 0.50

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 2.8e-36
        Leo1   2 lvklPnflsiepkpfdpetfeeeadeeaeeaeeserarkklkaentiRwRykedkgteikeSNArivrWsDGSlsLqlGsevfdvtrkal......... 91 
                 ++++P+f+++ p+ +d+++f + +         + +++k ++  ++ R R++e  +t    SN++i rWsDGSl++ +G e++++++k+l         
  CCE31355.1  92 VMRVPKFIKFLPELYDSSNFVPSE--------FDISNAKSERHIHVARVRKDE--STGLLHSNTNIFRWSDGSLTISVGGEHYEIQKKSLapapgkpyn 180
                 79******************8822........345668899999*********..68****************************************** PP

        Leo1  92 ..adsntyLvvsheaeevleaqgvitekltfrPa.sleseahrrltravakrhkkkakktklivteeDpekekeeae 165
                   +d ++y ++++ ++++l+++g++te++++rP+    ++a++ l++++a+++k+ +   ++i t++Dpe++k++ae
  CCE31355.1 181 elHDGHYYAAAAELSSNLLMTVGHLTEQFNVRPNkAGGDDALAALAERMAQASKSGKVGDNIIRTTRDPELQKKQAE 257
                 **********************************7777**************99999*****************997 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.056
        Leo1  33 e.....eserarkklkaentiRw 50 
                 e     e+er+ +++k ++t   
  CCE31355.1 365 EllddeEEERRPARKKRQKTTEV 387
                 23333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1223  (0.0682135); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 2848.28
//
Query:       CCE31356.1  [L=561]
Description: uncharacterized protein CPUR_05208 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-35  119.3   0.2    5.8e-33  113.5   0.1    2.2  2  DUF3336   Domain of unknown function (DUF3336)
    1.2e-12   48.4   0.3    2.6e-12   47.4   0.3    1.5  1  Patatin   Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> DUF3336  Domain of unknown function (DUF3336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.1   6.5e-37   5.8e-33      11     137 ..      35     174 ..      25     175 .. 0.90
   2 !    3.7   0.0    0.0053        47      57      96 ..     269     307 ..     250     309 .. 0.89

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 6.5e-37
     DUF3336  11 lrkklrkattYeeWkeaAkeLDellgndeWkendes.yYdyklvkkvlkkLrklrekedlkellellrtclkrNfagienprLYsetyiGTKklieeYi 108
                 + + lr+a+t+e+W+ea+ +LD+llg+d W++n++s  Yd++l+ ++l+ L  +re++ +++l++llr+ l+rN+++i+ p+LY++++ GTK lieeYi
  CCE31356.1  35 WLDVLRNAETFEDWEEASLNLDNLLGLDLWRNNPTSkNYDWRLITERLQLLAIAREDNHFQQLVNLLRAGLVRNLGNITVPKLYNRSFSGTKYLIEEYI 133
                 56779********************************************************************************************** PP

     DUF3336 109 devekalellaetkq............lsaeekleffketr 137
                 ++v +++e + + ++            l+ + kl+f+++tr
  CCE31356.1 134 SQVAESVEDISALPTtsvaqsqgggtvLTDQMKLDFIHDTR 174
                 **********9776655666777777777777777777766 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0053
     DUF3336  57 lkkLrklrekedlkellellrtclkrNfagienprLYset 96 
                 ++++++lr++  + + +++l+ c++ N+++++ ++ Y+++
  CCE31356.1 269 TRRIQRLRKEGYFLD-VTVLEDCVRANVGDLTFEEAYNRS 307
                 567889999999999.99**************99999987 PP

>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.3   2.9e-16   2.6e-12       1     173 [.     182     345 ..     182     356 .. 0.84

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 2.9e-16
     Patatin   1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdl..........lirelaanlaarlsgllgk 89 
                 Lvl+GG + g+ ++g++kaL   +g  ++ii+Gt +GA+ia+l+a   + ++l   l +  ++ ++ +++          +  +  a l++r  +l+ +
  CCE31356.1 182 LVLQGGAIFGLCHIGVVKAL-FLRGLLPRIITGTATGALIAALVAIH-TEEELPNVLTGEGIDVSAFSKTktdnelayqsVFGSKWATLTRRIQRLRKE 278
                 8******************9.99******************999998.444444444444444444444499*******99999*************** PP

     Patatin  90 gglfdaealrellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSs 173
                 g ++d+++l++ +r+ ++d+t++++  r +++                  + ++ ++++ +   l+++ ++++v ++ a+ aS 
  CCE31356.1 279 GYFLDVTVLEDCVRANVGDLTFEEAYNRSKRI-----------------LNITVATEDRGGIPTLLNYITAPNVLIWTAAVASN 345
                 ****************************9999.................56667777777777777777777777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4036.70
//
Query:       CCE31357.1  [L=820]
Description: uncharacterized protein CPUR_05209 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-06   25.8   0.7    8.4e-06   25.0   0.7    1.4  1  Fungal_trans  Fungal specific transcription factor domain
    4.8e-05   23.4  13.9    9.5e-05   22.4  13.9    1.5  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
        3.9    7.4  16.7        6.7    6.6  16.7    1.3  1  TFIIA         Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.7   1.4e-09   8.4e-06       1     187 [.     151     337 ..     151     344 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.4e-09
  Fungal_trans   1 ldrffsnfhpqfpilhkpsflpkt......ssenssksayaspllllailalGalfsesetkesnssltses...qefiafplraeilihedfssps 88 
                   ++ f ++++ +++i+  p fl ++      +  n+s+s ++  ll++++ +  ++  +  + + +s++ ++    +++++   r  +       +  
    CCE31357.1 151 MQNFLTDINYHYYIIYPPVFLQDYhiwwerRPRNRSISLQYTCLLAIVCACALQHVEPASEPIFESEFGDSLdvvSDQLHAAMRELASV---IPVGH 244
                   57899999*9***************9997666666666666666665555555555555555655555555555555555555555555...56788 PP

  Fungal_trans  89 sslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpL 185
                   +++  +q Ll+ +++ k+  +   ++ +++ a+   r+lg h+ p          ++ ++ e+ rRlw+    +D +i++ l rp ++d  + +  L
    CCE31357.1 245 YHILNVQRLLHSCYWYKAEAKFLEAWHVLSAAILEGRELGYHKAPQPGT------VSDFDLEMQRRLWCILDTWDWQISSGLSRPKIIDRADCDADL 335
                   99999***************************************99977......77777******************************9999999 PP

  Fungal_trans 186 Pc 187
                   P+
    CCE31357.1 336 PE 337
                   97 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4  13.9   1.6e-08   9.5e-05       2      34 ..      25      57 ..      24      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.6e-08
                S-HHHHHCT---STSSSS-HHHHHCT..HHHCCCC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkkln..leCtfys 34
                aC++C ++K KC+++ P C +C+++    eC+ y+
  CCE31357.1 25 ACTECQRRKQKCNREWP-CDRCQRRKiaDECR-YN 57
                9****************.********999***.54 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  16.7    0.0011       6.7      82     226 ..     559     688 ..     521     737 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0011
       TFIIA  82 apastsqslpslvipagksvqsltanssaataatfslpakleppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqqvvqq..sqgsaaqssvaal 178
                 + ++t+++ p+ + ++ k   s+++++s+at+++ +lp++le+     + v  q  +g + +++  +++ ++i a+pl +       ++ + +s +a+ 
  CCE31357.1 559 KRPKTKSKSPPTASTTTK-KGSVSTQNSRATSSASQLPVQLET--TSVTAVAPQESQGFQGSQQ-VQPVVASIPAAPLPTAPLPlpCENDVPSSHAAPR 653
                 222333333332222221.112222444456666666666666..2222334444443222222.3444555555666666554444444444444433 PP

       TFIIA 179 qaqsqqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqeesqqaq 226
                 + +    +  ++  q             ++q+q+q q q+q++++++q
  CCE31357.1 654 HYS-YDSHDYTQHHQH------------NPQHQHQHQHQHQHQQHNPQ 688
                 333.111222222222............11111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1319  (0.073568); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 5627.35
//
Query:       CCE31358.1  [L=214]
Description: related to extracellular matrix protein precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-11   43.1   0.7    5.3e-11   43.1   0.7    2.6  2  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc
  ------ inclusion threshold ------
       0.63    9.2  17.5       0.71    9.0  17.5    1.1  1  SOG2          RAM signalling pathway protein
        1.9    6.9  10.4        2.1    6.8  10.4    1.1  1  Macoilin      Macoilin family


Domain annotation for each model (and alignments):
>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.7   8.8e-15   5.3e-11       9      91 ..      28     103 ..      22     104 .. 0.90
   2 ?   -4.8   6.3         3   1.8e+04      58      58 ..     155     155 ..     112     199 .. 0.60

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 8.8e-15
  GPI-anchored   9 vtagkpvtitWkdsgtdpgtvtlvLcagssnnlksvktiasgiknsdgsytwtvpaslesggaYflqivsesnegiynySdrF 91 
                   ++ g+++t+++++    +g  t+ L +g+ +n+k+vkt++s ++++  s+t++   s +++g+Y ++i+s ++++++nyS++F
    CCE31358.1  28 LKEGASFTLKFNN---CQGGCTIILQNGPATNTKDVKTLTSAATGD--SFTFKA--SDVASGTYNFKIISNTDATEFNYSKQF 103
                   67899*******9...68**********************999876..888877..67889********99999********* PP

  == domain 2  score: -4.8 bits;  conditional E-value: 3
  GPI-anchored  58 y 58 
                   +
    CCE31358.1 155 T 155
                   1 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  17.5   0.00012      0.71     218     324 ..      74     188 ..      34     209 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00012
        SOG2 218 fsaqdveqGaalt..plrsdqipfnl.........srsrrssssgnsaspaangaqsetsersasssg.vqssasstPlgegstsppgalsrqslsttg 304
                 f+a dv+ G+      +++d+++fn           ++ +sss+++sas+aa  +++    +sa+ss  ++ s+ss   ++gst+   +++ ++ st +
  CCE31358.1  74 FKASDVASGTYNFkiISNTDATEFNYskqfaysgtGTVGASSSQSPSASSAAASSTT--AASSATSSTmKSVSSSSRGSSTGSTTG--STTGSASSTAS 168
                 555666666544423333334444445555555553333333333333333333322..222233333233333332233333333..22222223333 PP

        SOG2 305 ststltsssksrsssrsntn 324
                 +t++++ss   rss +++t 
  CCE31358.1 169 ATTSMESSTATRSSATAATT 188
                 33333444444444444432 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  10.4   0.00035       2.1     305     382 ..     114     184 ..      34     204 .. 0.42

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00035
    Macoilin 305 gsesellveesvkskssssssssnknskkasagsagssnssskkhsessksvtsssssknskkqklpaGkssaalkda 382
                 +s+++  +++ + s+++++ss++++++k+ s++s gss+ s+ +      s+t s+ss+ s   ++ +  +++++  +
  CCE31358.1 114 SSSQSPSASSAAASSTTAASSATSSTMKSVSSSSRGSSTGSTTG------STTGSASSTASATTSMES-STATRSSAT 184
                 11111111222222222222222222222222222222222222......222222222222222221.111122223 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1394  (0.0777511); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 1484.49
//
Query:       CCE31359.1  [L=328]
Description: uncharacterized protein CPUR_05211 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2616.13
//
Query:       CCE31360.1  [L=161]
Description: uncharacterized protein CPUR_05212 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1316.77
//
Query:       CCE31361.1  [L=519]
Description: probable UTP-glucose-1-phosphate uridylyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-192  639.6   0.0   2.1e-192  639.3   0.0    1.0  1  UDPGP     UTP--glucose-1-phosphate uridylyltransferase


Domain annotation for each model (and alignments):
>> UDPGP  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  639.3   0.0  1.2e-196  2.1e-192       1     413 []      70     484 ..      70     484 .. 0.98

  Alignments for each domain:
  == domain 1  score: 639.3 bits;  conditional E-value: 1.2e-196
       UDPGP   1 lesFkklferyleekskqekidwdkieplpeeevvdyedlkekeeekkellnklavlkLnGglGtsmGckgpKslieVrdgktfLdlivqqieelnkky 99 
                 +++F++lf+ryl++k+k + +dwd+i p+ + +vvdyedl   ++e+ ++lnklavlkLnGglGtsmGc+gpKs+ieVrdg++fLdl+v+qie+ln++y
  CCE31361.1  70 MDNFFALFRRYLNDKAKGNAVDWDRIAPPAQGQVVDYEDL--ANTESVNFLNKLAVLKLNGGLGTSMGCVGPKSVIEVRDGMSFLDLSVRQIEYLNRTY 166
                 799*************************************..88999**************************************************** PP

       UDPGP 100 nvdvPlvlmnSfnTdedtekilkkykkkkvdiltfnqsryPriskesllpvekkakkeekeewyPpGhGdlyesLknsglldkllaeGkeyiFvsniDN 198
                 +v+vP++lmnSfnT++dt+ i+kky++++vdiltfnqsryPri+k+sllpv+k+ + +  +ewyPpGhGd++esL+nsg+ldkll++G+e+iF+sn+DN
  CCE31361.1 167 DVNVPFLLMNSFNTNDDTAAIIKKYEGHNVDILTFNQSRYPRIYKDSLLPVPKDFE-SPISEWYPPGHGDVFESLYNSGILDKLLERGIEIIFLSNVDN 264
                 ******************************************************95.789*************************************** PP

       UDPGP 199 lgatvDlkilnllvekkaeflmevtektradvkgGtlieyegklrlleiaqvpkehveefksvkkfkifntnniwinlkalkrlveekelkleiivnkk 297
                 lga+vDl+il+++ve+kae++me+t+kt+advkgGt+i+y+g++rlleiaqvpkehv+efks+kkfk+fntnniw+nl+a+kr+ve++el++eii n k
  CCE31361.1 265 LGAVVDLRILQHMVETKAEYIMELTNKTKADVKGGTIIDYDGSVRLLEIAQVPKEHVNEFKSIKKFKYFNTNNIWLNLEAIKRVVENDELEMEIIPNGK 363
                 *************************************************************************************************** PP

       UDPGP 298 tldegek......viqletavgaaiksFkkavginVpRsrflpvkttsdlLlvksdlysleegslvlnpkrsfktvplvkLgsefkkveefqkrfksip 390
                 t+  ++k      ++qletavgaai++F++a+g+nVpR+rflpvkt+sdl+lvksdly+l++g+l+++p+r+ +++pl+kLg  fkkv++fqk+++sip
  CCE31361.1 364 TIPGDKKgesdisILQLETAVGAAIRHFNNAHGVNVPRRRFLPVKTCSDLMLVKSDLYTLKHGQLQMSPARF-GDAPLIKLGGDFKKVSDFQKHIPSIP 461
                 **95555678999**********************************************************7.8************************* PP

       UDPGP 391 slleldhltvsGdvtfgknvtLk 413
                 ++leldhlt++G v +g++vtLk
  CCE31361.1 462 KVLELDHLTITGAVNLGRGVTLK 484
                 **********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3842.35
//
Query:       CCE31362.1  [L=223]
Description: uncharacterized protein CPUR_05214 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-59  198.6   1.0    7.9e-59  198.4   1.0    1.0  1  DUF3605   Protein of unknown function (DUF3605)


Domain annotation for each model (and alignments):
>> DUF3605  Protein of unknown function (DUF3605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.4   1.0   4.4e-63   7.9e-59       2     152 ..      50     199 ..      49     200 .. 0.97

  Alignments for each domain:
  == domain 1  score: 198.4 bits;  conditional E-value: 4.4e-63
                 HHHHHHHHHHT-GGG----HHHHHHHHHHHHHHT...TS-HHHHHHHHHT-....STTS.TTSSGGGEEEEE-SS---B-TTEEEEEEEESS---TT-S CS
     DUF3605   2 WeevkeiieeneleklkRspsdlrrYlkfkkelkkkygsiveyilkerlkWeeleakeelpfadeedykillNdfPYgleedivHlvvWskteleedee 100
                 We+v +i+++n+le+++R+ps+lrrY++f+ +l+++ygs+ ++il+erl+W+e  + + +pf+ ++d+kil+Nd+PYg++++ivHlvvW+k+el++d+ 
  CCE31362.1  50 WEDVVNIVRTNKLEQFHRKPSQLRRYKAFTFQLASQYGSVAAFILRERLRWQEPVQARGTPFQCADDVKILWNDWPYGIDKRIVHLVVWTKFELRSDPL 148
                 ***************************************************88666666**************************************** PP

                 S.HHHHHHHHHHHHHHHTHHH.....HT-EEEE---TTT-SSTTSEEEEEEE CS
     DUF3605 101 tgdlteesrakieefvkktfvekleeedkvlwFkNwasLqSvkaveHiHvll 152
                 tgdltee+r++i++fv++tf++++  +++v+wFkNwasL+Sv+aveH+Hv++
  CCE31362.1 149 TGDLTEEARTEIDDFVARTFSSRMP-ANNVVWFKNWASLKSVHAVEHFHVMM 199
                 ************************9.99***********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1678.09
//
Query:       CCE31363.1  [L=318]
Description: related to dihydroneopterin aldolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-19   69.8   0.0    7.7e-16   58.6   0.0    2.4  3  FolB      Dihydroneopterin aldolase


Domain annotation for each model (and alignments):
>> FolB  Dihydroneopterin aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00015       2.6      23      62 ..      57      99 ..      54     108 .. 0.82
   2 ?   -3.6   0.0      0.89   1.6e+04      86      98 ..     161     173 ..     133     181 .. 0.73
   3 !   58.6   0.0   4.3e-20   7.7e-16       3     110 ..     202     309 ..     200     310 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00015
                EEEEEEEEEEE..-CHHHHHHTT.GGGSS-HHHHHHHHHHHHH CS
        FolB 23 Qrvvvdlelel..dlskaaesdd.ledtvdYaelakavkelve 62
                Q++ v++ ++l  ++ +a++sd+   dtv+Y+ l+ka+ + + 
  CCE31363.1 57 QPISVSVAVHLhnSFGSASTSDKlTPDTVHYGLLSKAILATLD 99
                7888888887755889999****66788*********998876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.89
                 ESEEEEEEEETTS CS
        FolB  86 vekvevrveKpna 98 
                 ++++ev+v  p+a
  CCE31363.1 161 LKRLEVKVCLPKA 173
                 5667777777776 PP

  == domain 3  score: 58.6 bits;  conditional E-value: 4.3e-20
                 EEEEEEEEEESSSHHHHHC-EEEEEEEEEEE-CHHHHHHTTGGGS.S-HHHHHHHHHHHHHSSEES-HHHHHHHHHHHHHCHSTESEEE.......... CS
        FolB   3 ikglrvpaiiGvnpeErelkQrvvvdleleldlskaaesddledt.vdYaelakavkelvesssfkllEalaeriaealleefpvekve.......... 90 
                 ++++rvp++iGvn++Er++kQ vv ++e+          ++l+   ++Y  l++ +++ ++sssf+++Eal  ++a  l   +  ek++          
  CCE31363.1 202 LHDIRVPVLIGVNNNERQAKQSVVANVEV----------ERLDVKgDHYCGLEDVIVQAMTSSSFETIEALLGDLAVGLK-GYLTEKLKapkdgkgwhl 289
                 89***************************..........34555559**************99*************9995.333444445555666666 PP

                 .EEEEETTSSSTCESEEEEEE CS
        FolB  91 .vrveKpnapigaadavgvei 110
                  + veKp a+  +ada+ ve+
  CCE31363.1 290 rIAVEKPIAV-VFADAPCVEL 309
                 6********6.6699*99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2470.82
//
Query:       CCE31364.1  [L=429]
Description: uncharacterized protein CPUR_05216 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   21.1  13.1    0.00024   20.5  13.1    1.4  1  7tm_2      7 transmembrane receptor (Secretin family)
  ------ inclusion threshold ------
       0.22   10.9   0.1       0.34   10.3   0.1    1.2  1  DUF4392    Domain of unknown function (DUF4392)
        0.7   10.0   4.1       0.63   10.1   0.4    2.6  2  Bee_toxin  Honey bee toxin


Domain annotation for each model (and alignments):
>> 7tm_2  7 transmembrane receptor (Secretin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5  13.1     4e-08   0.00024       6     223 ..      12     265 ..       8     321 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4e-08
                 HHHHHHHHHHHHHHHHHHHHHHTTTGT...TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT...TTEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       7tm_2   6 vittvGlslSlvaLlvallilllfrkl...rctrnyihlnLflslllrailvlvkdavlks...eedeseaevekvgCkvvavflhYfllanffWllvE 98 
                 ++ tv+  + +++ + ++ +l++   l   + +r+y+ + L + +ll  + ++v   +  +   ++ + ++ +++ +C +   +l     +  +W ++ 
  CCE31364.1  12 IMVTVANWVAVASTICCVYLLVSWAALpvdKTNRHYLSVCLTFGVLLMTLGFVVPLVTQPNqcyDSITPHSMSTSKVCGASGSLLILGGWSGVMWAFLR 110
                 67777777777777777777777777722245577777777777777776666555554442224455555557777********************** PP

                 HHHHHHHHHT-XXSHHHCHHHHHHHHTHHHHHHHHHHHHHHHH..HS-SSSS---SS...TCTHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-T CS
       7tm_2  99 glylytllveaffserkylkkylliGwGvPavvvavwavvkay..lederCWlsnee...kllwiikgPvlliilvNfilfinivrvlvqklkesnkee 192
                  l l++ +   +   r+ + +  +iGwG+P+v ++v++v+ ++       C ++ ++   +l++ +   + +++++ f  f + v+v ++ l  s +++
  CCE31364.1 111 SLSLHLQICWQVLVGRNFMFFAQAIGWGIPLVGITVALVFSGVsfRFGPTCHINHKNslaDLWIPLLIVAGATVILTFATFGCCVKVYLASLYDSSETT 209
                 ****************************************6551145578*999999775555566777778889999999999998888887777666 PP

                 TSHH...........................HHHHHHHHHHHHHHHHHHH.HHHHSS CS
       7tm_2 193 kdlkka.........................lklvkstlvllpLlgityv.vfavnp 223
                  +++                           l++   +lvl+++  + +  v++v +
  CCE31364.1 210 DRSS-LpahtsssiqavsprqayrrvrrviaLQWRGIALVLIIIADVIFFsVIFVFQ 265
                 6554.3456777777777777777777666655655666666666666666333333 PP

>> DUF4392  Domain of unknown function (DUF4392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   5.8e-05      0.34     220     268 ..      10      57 ..       6      65 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.8e-05
     DUF4392 220 flivagvSNWggyalaaalallsskevsllpsvekeeevlealveagvv 268
                 f i+ +v+NW + a + ++ +l  ++  +lp  + ++++l++++  gv+
  CCE31364.1  10 FFIMVTVANWVAVASTICCVYLLVSW-AALPVDKTNRHYLSVCLTFGVL 57 
                 7899*********9766666666665.9***88889*******999975 PP

>> Bee_toxin  Honey bee toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.21   1.2e+03       3      13 ..      24      34 ..      22      36 .. 0.86
   2 ?   10.1   0.4   0.00011      0.63       7      49 .]      51      93 ..      47      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.21
   Bee_toxin  3 smlrCiflFls 13
                s+  C++l +s
  CCE31364.1 24 STICCVYLLVS 34
                7889****998 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00011
   Bee_toxin  7 CiflFlsviLitsYFVtPtmsikCNCkriviPh.l.CakkCgkkG 49
                C  l   v+L+t  FV P ++    C   ++Ph +   k Cg  G
  CCE31364.1 51 C--LTFGVLLMTLGFVVPLVTQPNQCYDSITPHsMsTSKVCGASG 93
                5..6678**************9999******99432457788765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2979.92
//
Query:       CCE31365.1  [L=625]
Description: uncharacterized protein CPUR_05217 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-09   34.9   0.0      1e-08   33.9   0.0    1.4  1  CRT10       CRT10
  ------ inclusion threshold ------
      0.091   13.2   0.0       0.21   12.0   0.0    1.5  1  FhuF        Ferric iron reductase FhuF-like transporter
       0.16   11.2  20.0       0.25   10.7  18.1    2.1  2  BUD22       BUD22


Domain annotation for each model (and alignments):
>> CRT10  CRT10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.7e-12     1e-08      38     294 ..      87     389 ..      60     396 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.7e-12
       CRT10  38 g.FkNNlaviie.rsvlfiaagseieifdldklsalsktkvv...lreytkpsqvkledrlistspnphtinflkivnflGqevLvaciddGivllwev 131
                 + + NNl ++++  +  f+a  s i ++   +++      +    +  yt + +  +    +    +ph in l +  +  qe++v   ddG+v  +++
  CCE31365.1  87 QrYRNNLTALSQkYNLYFTAYRSVIYVYVPRCVPRQT--IPRdpdVSVYTYAHAGATAGGVVDD-NSPHMINHLVVGMLGTQEIVVTTHDDGNVTAFYT 182
                 3599999999986667789999999999999998733..3332235555555554444444433.38******************************** PP

       CRT10 132 stiikefkkf....................ssdidegtsriki.kPdlklrleasvWslDvidydsislialsdnsqgitllaydkdkerfyiekeiq. 208
                 + + ++++                       +      srik+ kP +   +  s+W++ +  ++++ lia+s+n + + ++a       ++  ++ q 
  CCE31365.1 183 KDFAEYIRRSrsnapsanatapettaprqrRKSRLRASSRIKLpKPFFEESVGISAWGIAI--HQQSRLIAISSNRHEVMVFAPAL----VATGPQAQt 275
                 *******99988899888887776665543222222256666534555555556*****95..5******************9887....555554444 PP

       CRT10 209 .............................tshnvPcvsfvknednseghitvayasisgevvtlkfkfkeedgplerlkiessildtrfll..gedcWT 276
                                                 n+P +sfv++e  ++    +++ +i g++    + +k  + p++ ++   + l++  +l  ++  W 
  CCE31365.1 276 cdclsccggleervrrrarnwriivalgpEASNLPNISFVDDEHGNA--ERISAIDIRGNMWLADI-WKPYSAPMRVMPSTNQLLMSEEFLpaPSRGWG 371
                 55667778899999**************9999********9987554..389999*****999999.99999998888888999999999833467799 PP

       CRT10 277 vtpiskkdFkevdsleal 294
                 +  + +++F+ v s e+l
  CCE31365.1 372 ILALANEYFLTVHSEEEL 389
                 999999999999988777 PP

>> FhuF  Ferric iron reductase FhuF-like transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.5e-05      0.21      19      76 ..     153     210 ..     151     237 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.5e-05
                 HHHH-EE---STTTEEEEEET.TEEEEEEE---........TTT-EES-TT----TTSGGGB-- CS
        FhuF  19 lleygialeahlqNvllvldd.grpvrlllrdf.egv....slkaellpelpalpeevkrlltd 76 
                 + ++ ++ ++  q ++++ +d g +++++ +df e +    s    ++++ +++p   ++++++
  CCE31365.1 153 MINHLVVGMLGTQEIVVTTHDdGNVTAFYTKDFaEYIrrsrS---NAPSANATAP---ETTAPR 210
                 6677788888899999999999***********665553221...2222222222...122222 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.11   6.7e+02     225     232 ..      66      85 ..      23     227 .. 0.50
   2 ?   10.7  18.1   4.2e-05      0.25     141     264 ..     423     595 ..     397     617 .. 0.44

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.11
       BUD22 225 sddeded............e 232
                 sdded+d            +
  CCE31365.1  66 SDDEDADhlpvnsiftlvpS 85 
                 44444444444444444440 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 4.2e-05
       BUD22 141 kkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsedeekeeseddeeeeeededdedaee................................... 204
                 + +++++++ +++++ ++++  +++       +e++ ++d+e+++++dde++  + +d +d+ +                                   
  CCE31365.1 423 NSSTQPPRRPAASTNVSNDTGVSAD-----LMDEDDYEDDDEDDDEDDDEDVHGAIDDYSDG-Dysdylnevvygpnidddvffpdvffqdgffqdgfg 515
                 3344444444443333333333333.....33333333332333444444444444433333.247799999999999999999999988888888888 PP

       BUD22 205 ....deedeeaeerelaqydgllasddeded......................eyneetdeesseesdssdssesasesesessek 264
                     d +d++++++e +   +   sd++++d                      +   +++ ++ +++ s+++s++as+  s+++++
  CCE31365.1 516 agdvD-SDDDDDDEEGSWVTS---SDSDESDhdqgnedaeqaeqgqnynngngN--GNSTGNNASNNASNNASNNASNNASNNASN 595
                 77641.333333333332222...333333334666666677777755555331..222222222222222222222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1473  (0.0821574); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.49
# Mc/sec: 3867.82
//
Query:       CCE31366.1  [L=148]
Description: uncharacterized protein CPUR_05219 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-11   44.3   0.1    2.9e-11   44.0   0.1    1.2  1  Helitron_like_N  Helitron helicase-like domain at N-terminus


Domain annotation for each model (and alignments):
>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.1   1.6e-15   2.9e-11     137     190 .]       7      58 ..       1      58 [. 0.92

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 1.6e-15
  Helitron_like_N 137 taadrpdivarvFhrkleaflkdllkegvfGkvsayvytvEfQkRGlpHaHlLl 190
                      +++++p+i+a +F+ +++ f k ++ +++   v++ +++vEfQ RG+p++H+Ll
       CCE31366.1   7 NLKNNPHIAAYHFMDRFQSFSKGVIAKKF--AVVDSWWRVEFQARGSPRVHMLL 58 
                      6899********************98888..899******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1042.91
//
Query:       CCE31367.1  [L=142]
Description: uncharacterized protein CPUR_05220 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.045   12.1   6.6      0.045   12.1   6.6    1.0  1  CDC45       CDC45-like protein
      0.095   12.4   3.6       0.12   12.1   3.6    1.1  1  RMI1_N      RecQ mediated genome instability protein
        9.8    4.8   6.6         11    4.6   6.6    1.0  1  Presenilin  Presenilin


Domain annotation for each model (and alignments):
>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   6.6   7.5e-06     0.045     139     208 ..      58     131 ..       9     138 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.5e-06
       CDC45 139 eeeeddddeeeeeeeeedee....deeedeeeskkkrksksdeeeesddddersrkrrrsepsakklrrqlkke 208
                 ++++d d + ee+ e+ ++     ++ +++++++++rk ++++  e+d + +++rkr+r + s++++r+++ k+
  CCE31367.1  58 KKSNDPDVDYEESTEDVSRAayakQRANEQRSREQRRKGRTSRYTEQDPKTDKERKRNRFKVSERRTRESRTKM 131
                 22222222222222222222000022223333334444334444446666677777777775666655554443 PP

>> RMI1_N  RecQ mediated genome instability protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.6     2e-05      0.12      53     141 ..      46     131 ..      31     140 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2e-05
      RMI1_N  53 svlpaniaeqrksesspalkgpvvvQvldiedigsSaysqlealeavergeetrgrevirtesaaaasakadeenseekeeaqats.ses 141
                  v+pa+i+++ +++     + p v   ++ ed+++ ay   +a e+++r+++ +gr+   te++ +++++++ ++ +++e+++ +s ++ 
  CCE31367.1  46 DVIPADIDTSLSKK----SNDPDVDYEESTEDVSRAAYAKQRANEQRSREQRRKGRTSRYTEQDPKTDKERKRNRFKVSERRTRESrTKM 131
                 46777776655555....455544455899****************99999999999888843334444444444444444444433222 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   6.6    0.0019        11     236     286 ..      73     123 ..      34     140 .. 0.35

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0019
  Presenilin 236 eeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessa 286
                 + +++a +k+++++++s+e++++ ++s+ ++q  ++++e+++++ +++++ 
  CCE31367.1  73 DVSRAAYAKQRANEQRSREQRRKGRTSRYTEQDPKTDKERKRNRFKVSERR 123
                 111111111111111111111111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1471  (0.0820458); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1100.28
//
Query:       CCE31368.1  [L=232]
Description: uncharacterized protein CPUR_05221 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0076   16.7   1.3      0.016   15.7   1.3    1.4  1  SVIP            Small VCP/p97-interacting protein
  ------ inclusion threshold ------
       0.11   13.1   0.0       0.22   12.2   0.0    1.5  1  Asp_protease_2  Aspartyl protease


Domain annotation for each model (and alignments):
>> SVIP  Small VCP/p97-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.3   1.8e-06     0.016       5      37 ..      84     117 ..      82     120 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.8e-06
        SVIP   5 lsCfgeskeeeeetpda.eerRrqqaEAAekRqe 37 
                 l+C+++++  ++ + +  + rR q  EAA+kR +
  CCE31368.1  84 LKCCAQDRPPANPEHQKdARRRDQKWEAAQKRYQ 117
                 689*9999999666665256777899******65 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.5e-05      0.22      11      77 ..       2      75 ..       1      86 [. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.5e-05
  Asp_protease_2 11 rfllDTGast.tlispela....eklglkvreseltvrvsgagge..vkarlvrldslklggltlknvpalvld 77
                    ++l DTGa+t ++isp++a    ++lg + ++++ ++++     +   ka +++  sl++ + ++  +++++++
      CCE31368.1  2 TALCDTGAQTpLVISPRAAkvvaDTLGATIKQLPKPMQYVDYREKiaGKATKFVEASLEIDSRRFLKQRFVITE 75
                    6899****977******996776888999999976666655555421344445555788888888888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1855.71
//
Query:       CCE31369.1  [L=103]
Description: uncharacterized protein CPUR_05222 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 771.54
//
Query:       CCE31370.1  [L=143]
Description: uncharacterized protein CPUR_05223 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-08   32.3   0.2     0.0023   17.7   0.0    2.3  2  HTH_23         Homeodomain-like domain
    1.7e-07   31.7   0.0    4.7e-07   30.3   0.0    1.7  2  HTH_32         Homeodomain-like domain
    2.1e-07   30.9   0.9     0.0067   16.5   0.2    3.1  3  HTH_7          Helix-turn-helix domain of resolvase
    2.3e-06   27.8   0.0    8.5e-06   25.9   0.0    1.8  2  HTH_Tnp_Tc3_2  Transposase
    5.4e-05   22.5   2.4      0.016   14.6   0.1    2.3  2  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
    0.00033   20.3   0.1    0.00071   19.2   0.1    1.6  2  Sigma70_r4_2   Sigma-70, region 4
    0.00056   19.4   0.0     0.0081   15.7   0.0    2.3  2  HTH_24         Winged helix-turn-helix DNA-binding
    0.00091   18.7   0.4     0.0018   17.8   0.2    1.6  2  GerE           Bacterial regulatory proteins, luxR family
     0.0035   17.4   0.0      0.011   15.7   0.0    1.7  2  HTH_3          Helix-turn-helix
     0.0046   17.4   0.0      0.032   14.7   0.0    2.0  2  HTH_26         Cro/C1-type HTH DNA-binding domain
     0.0091   16.2   0.1       0.47   10.7   0.0    2.3  2  HTH_17         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.045   13.6   0.0        2.1    8.2   0.0    2.4  2  HTH_10         HTH DNA binding domain
      0.045   13.5   0.1        3.9    7.3   0.0    2.3  2  HTH_Tnp_4      Helix-turn-helix of DDE superfamily endonuclea
      0.056   13.5   0.0       0.18   11.9   0.0    1.7  2  Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix do
      0.062   13.5   0.0       0.12   12.6   0.0    1.5  1  HTH_21         HTH-like domain
      0.074   13.0   0.0       0.69    9.9   0.0    2.1  2  HTH_Crp_2      Crp-like helix-turn-helix domain
      0.076   12.5   0.0        1.1    8.8   0.0    2.3  2  Sigma70_r4     Sigma-70, region 4
      0.095   12.5   0.2       0.35   10.7   0.5    1.8  2  MerR           MerR family regulatory protein
       0.13   12.8   0.0         24    5.6   0.0    2.4  2  DUF134         Protein of unknown function  DUF134
       0.14   12.2   1.2        5.7    7.0   0.1    2.3  2  HTH_11         HTH domain
       0.17   11.9   1.5        0.7   10.0   0.2    2.6  2  HTH_29         Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.7e-06    0.0023      13      40 ..      16      43 ..       6      51 .. 0.79
   2 !   12.4   0.1   0.00012       0.1      27      41 ..     110     124 ..     110     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.7e-06
      HTH_23 13 llae.GlsvreIAreLgvsrrTvyrwlkr 40
                l +  G+s++e+A + g+s rTv ++   
  CCE31370.1 16 L-KAyGISTKEVASITGISVRTVNKIFAN 43
                3.335*******************99765 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00012
      HTH_23  27 LgvsrrTvyrwlkry 41 
                 +++sr+Tv+r+l++ 
  CCE31370.1 110 YNISRHTVWRILRAS 124
                 69**********985 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.1   5.2e+03      63      72 ..      31      40 ..      15      41 .. 0.72
   2 !   30.3   0.0   5.5e-10   4.7e-07      18      73 .]      64     121 ..      56     121 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6.1
      HTH_32 63 kvShstvyri 72
                 +S +tv +i
  CCE31370.1 31 GISVRTVNKI 40
                3899999876 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 5.5e-10
      HTH_32  18 kdrprrgrprklsdevrariiallreep...rWsprqlaarlaeregvkvShstvyriL 73 
                 +d+p++grp+k ++ev++ i+  +r++    + ++  la+ l e  g+ +S+ tv+riL
  CCE31370.1  64 EDAPKSGRPKKQTPEVKEIILSKVRDDCygrEKTCANLAGDLCEL-GYNISRHTVWRIL 121
                 7999********************555467778999999999444.59**********8 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   7.8e-06    0.0067      13      43 ..      12      42 ..       6      44 .. 0.92
   2 ?    0.2   0.0      0.98   8.4e+02       1       9 [.      70      78 ..      70      86 .. 0.78
   3 !   11.0   0.0   0.00041      0.35      31      44 ..     110     123 ..     103     124 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.8e-06
                GGGSSTTTT--STTTSSSS---SSSS--SS- CS
       HTH_7 13 rvvkLleeGisiskIAkevnisRsTvYRyla 43
                +v++L + Gis +++A +++is+ Tv +++a
  CCE31370.1 12 SVLTLKAYGISTKEVASITGISVRTVNKIFA 42
                6899999*******************99987 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.98
                S---SS-HH CS
       HTH_7  1 GRpsklskn 9 
                GRp+k +++
  CCE31370.1 70 GRPKKQTPE 78
                9****9884 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00041
                 S---SSSS--SS-- CS
       HTH_7  31 vnisRsTvYRylad 44 
                 +nisR Tv R+l++
  CCE31370.1 110 YNISRHTVWRILRA 123
                 8***********97 PP

>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.6   2.2e+03      29      51 ..      31      53 ..      17      56 .. 0.71
   2 !   25.9   0.0     1e-08   8.5e-06       4      52 ..      83     134 ..      80     140 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.6
  HTH_Tnp_Tc3_2 29 svsreTirrrLrkaglkkrkprk 51
                    +s +T+ ++  +a  ++ +p  
     CCE31370.1 31 GISVRTVNKIFANAVSRGFNPED 53
                   57888988887777666666655 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 1e-08
  HTH_Tnp_Tc3_2   4 Ivrlvrkd...PritlreLanelkeeGksvsreTirrrLrkaglkkrkprkk 52 
                    I+++vr d   +++t+++La +l e G ++sr T++r+Lr++ l+   + +k
     CCE31370.1  83 ILSKVRDDcygREKTCANLAGDLCELGYNISRHTVWRILRASRLQEDEANEK 134
                    7778888744466**********888*****************999888777 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.9e-05     0.016      28      51 ..      21      44 ..       8      45 .. 0.87
   2 !    7.9   0.2    0.0024         2      37      49 ..     110     122 ..     110     124 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-05
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwrildry 51
                  +s k+vA ++g+S +TV+ i+  +
    CCE31370.1 21 ISTKEVASITGISVRTVNKIFANA 44
                  689*****************9866 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0024
  HTH_Tnp_ISL3  37 lgvSwtTVwrild 49 
                   +++S +TVwril+
    CCE31370.1 110 YNISRHTVWRILR 122
                   68999******98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   8.3e-07   0.00071      18      45 ..      13      39 ..       6      47 .. 0.84
   2 ?   -3.3   0.0       8.7   7.4e+03      37      46 ..     111     120 ..     106     125 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 8.3e-07
                  HHHHHHTS---HHHHHHHHT--HHHHHH CS
  Sigma70_r4_2 18 ifllryleglsykEIAellgisegtVks 45
                  +++l    g s+kE+A+++gis++tV++
    CCE31370.1 13 VLTL-KAYGISTKEVASITGISVRTVNK 39
                  5666.579******************87 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8.7
                   T--HHHHHHH CS
  Sigma70_r4_2  37 gisegtVksr 46 
                   +is  tV + 
    CCE31370.1 111 NISRHTVWRI 120
                   6788888764 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.5e-06    0.0081      17      45 ..      20      48 ..      14      49 .. 0.86
   2 ?    1.3   0.0      0.31   2.6e+02      28      39 ..     111     122 ..     104     123 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.5e-06
      HTH_24 17 risqreLAerlglSpstvnrrlkrLeeeG 45
                +is +e+A  +g+S+ tvn+   + ++ G
  CCE31370.1 20 GISTKEVASITGISVRTVNKIFANAVSRG 48
                8******************9887777766 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.31
      HTH_24  28 glSpstvnrrlk 39 
                 ++S+ tv+r l+
  CCE31370.1 111 NISRHTVWRILR 122
                 799999999997 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   2.1e-06    0.0018       9      41 ..      12      44 ..       9      47 .. 0.88
   2 ?   -3.6   0.0       9.8   8.3e+03      28      34 ..     111     117 ..     110     117 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.1e-06
                HHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHH CS
        GerE  9 evLrllaeGksnkeIAeelniSekTVkvhksni 41
                +vL+l a G s+ke+A++ +iS +TV+   +n+
  CCE31370.1 12 SVLTLKAYGISTKEVASITGISVRTVNKIFANA 44
                79************************9766665 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 9.8
                 TS-HHHH CS
        GerE  28 niSekTV 34 
                 niS  TV
  CCE31370.1 111 NISRHTV 117
                 8999998 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.3e-05     0.011       6      32 ..      17      43 ..      15      52 .. 0.90
   2 ?   -1.7   0.0       3.7   3.2e+03      34      47 ..     110     123 ..     107     128 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.3e-05
                HHTTHHHHHHHHHHTSSHHHHHHHHTT CS
       HTH_3  6 kqlglsqeeLAeklGvsrstisriEnG 32
                k+ g+s +e+A  +G+s++t+++i+ +
  CCE31370.1 17 KAYGISTKEVASITGISVRTVNKIFAN 43
                789*********************976 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.7
                 SCSBHHHHHHHHHH CS
       HTH_3  34 rnPsletlkklaka 47 
                  n+s  t++++++a
  CCE31370.1 110 YNISRHTVWRILRA 123
                 45777888888775 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.7e-05     0.032       6      36 ..      16      46 ..      14      48 .. 0.89
   2 ?    0.2   0.0       1.2   1.1e+03      15      31 ..     104     121 ..      99     128 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.7e-05
      HTH_26  6 madrgitkseLargtgisaatlsrlvkgkpe 36
                +++ gi+++e+a  tgis  t+++++ + ++
  CCE31370.1 16 LKAYGISTKEVASITGISVRTVNKIFANAVS 46
                6789*********************998765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.2
      HTH_26  15 eLar.gtgisaatlsrlv 31 
                 +L++ g++is+ t+ r++
  CCE31370.1 104 DLCElGYNISRHTVWRIL 121
                 566558999999998876 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00055      0.47       3      20 ..      22      39 ..      21      44 .. 0.90
   2 ?    3.2   0.0      0.12     1e+02      12      25 ..     111     124 ..     104     127 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00055
      HTH_17  3 tveEaAelLgvsrstvyr 20
                +++E+A + g+s++tv +
  CCE31370.1 22 STKEVASITGISVRTVNK 39
                89*************975 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.12
      HTH_17  12 gvsrstvyrlirrg 25 
                 ++sr+tv r +r+ 
  CCE31370.1 111 NISRHTVWRILRAS 124
                 899***99988765 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0025       2.1      24      49 ..      21      46 ..      19      49 .. 0.90
   2 ?    3.0   0.0       0.1        89      34      47 ..     111     124 ..      92     126 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0025
      HTH_10 24 vtlkeLAkelGIskstlsehLrkaes 49
                +++ke+A + GIs  t+ ++  +a s
  CCE31370.1 21 ISTKEVASITGISVRTVNKIFANAVS 46
                789**************999988876 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.1
      HTH_10  34 GIskstlsehLrka 47 
                 +Is+ t++ +Lr++
  CCE31370.1 111 NISRHTVWRILRAS 124
                 7**********985 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.049        41      30      43 ..      31      44 ..      20      47 .. 0.83
   2 ?    7.3   0.0    0.0045       3.9      27      41 ..     108     122 ..     100     124 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.049
   HTH_Tnp_4 30 gvsestvsrifhkw 43
                g+s+ tv++if + 
  CCE31370.1 31 GISVRTVNKIFANA 44
                9**********875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0045
   HTH_Tnp_4  27 yrFgvsestvsrifh 41 
                 +++++s+ tv+ri +
  CCE31370.1 108 LGYNISRHTVWRILR 122
                 579**********87 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00021      0.18       8      47 ..      17      59 ..      14      62 .. 0.90
   2 ?   -1.8   0.0       3.9   3.3e+03      22      29 ..     110     117 ..     102     130 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
                   HHHT-SSCHHHHCCTT--HHHHH....HHHHSSS--HHHHHHHH CS
  Phage_CI_repr  8 saygvkmqkeLAdlLgiakssvs....twvrRdffPgdvvvtca 47
                   +ayg++++ e A+  gi+  +v     + v+R+f+P d  ++++
     CCE31370.1 17 KAYGISTK-EVASITGISVRTVNkifaNAVSRGFNPEDRPMKIN 59
                   8****998.************988888***********888876 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.9
                    TT--HHHH CS
  Phage_CI_repr  22 Lgiakssv 29 
                     +i++++v
     CCE31370.1 110 YNISRHTV 117
                    57999998 PP

>> HTH_21  HTH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00014      0.12      18      53 ..      89     127 ..      72     129 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
      HTH_21  18 kgrYGyrriwaeLrr...eggvrvnhkrVrRlMrelGLr 53 
                   +YG  + +a L     e g+++++ +V R+ r   L+
  CCE31370.1  89 DDCYGREKTCANLAGdlcELGYNISRHTVWRILRASRLQ 127
                 459**********9634456789***********98775 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00081      0.69      22      46 ..      21      45 ..       5      61 .. 0.82
   2 ?    0.9   0.0      0.53   4.5e+02      32      44 ..     111     123 ..     103     129 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00081
                HHHHHHHHHTTSSHHHHHHHHHHHH CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilseLk 46
                ++ +e As+ G++  tv++i++   
  CCE31370.1 21 ISTKEVASITGISVRTVNKIFANAV 45
                7999****************98655 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.53
                 TSSHHHHHHHHHH CS
   HTH_Crp_2  32 Gltretvsrilse 44 
                 +++r tv ril++
  CCE31370.1 111 NISRHTVWRILRA 123
                 5799999999975 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0013       1.1      20      45 ..      20      45 ..      12      47 .. 0.87
   2 ?    1.4   0.0      0.27   2.3e+02      30      42 ..     110     122 ..      90     127 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0013
                T--HHHHHHHHTS-HHHHHHHHHHHH CS
  Sigma70_r4 20 glTleEIgerlgiSrerVrqiekrAl 45
                g + +E++ + giS  +V  i ++A+
  CCE31370.1 20 GISTKEVASITGISVRTVNKIFANAV 45
                56889**************9988886 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.27
                 HTS-HHHHHHHHH CS
  Sigma70_r4  30 lgiSrerVrqiek 42 
                 ++iSr +V +i++
  CCE31370.1 110 YNISRHTVWRILR 122
                 799***9999887 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   0.00041      0.35       1      16 [.      22      37 ..      22      37 .. 0.93
   2 ?   -2.6   0.0       5.8     5e+03       3      16 ..     103     117 ..     103     117 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00041
                EHHHHHHHHTTTHHHH CS
        MerR  1 tIgevAeltGvsprtL 16
                +++evA +tG+s+rt+
  CCE31370.1 22 STKEVASITGISVRTV 37
                689************7 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.8
                 HHHHHH.HTTTHHHH CS
        MerR   3 gevAel.tGvsprtL 16 
                 g+++el  ++s +t+
  CCE31370.1 103 GDLCELgYNISRHTV 117
                 677888568999986 PP

>> DUF134  Protein of unknown function  DUF134
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.044        37      50      74 ..      20      44 ..       7      48 .. 0.82
   2 ?    5.6   0.0     0.028        24      61      76 ..     111     126 ..      94     134 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.044
      DUF134 50 dlkqeeaaklmGiskatlwrlltea 74
                 ++ +e a + Gis +t+ ++ ++a
  CCE31370.1 20 GISTKEVASITGISVRTVNKIFANA 44
                478999************9998776 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.028
      DUF134  61 Giskatlwrllteark 76 
                  is++t+wr+l ++r 
  CCE31370.1 111 NISRHTVWRILRASRL 126
                 59**********9995 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0067       5.7      15      34 ..      19      39 ..       9      42 .. 0.84
   2 ?    4.0   0.1     0.058        50      26      34 ..     111     119 ..     109     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0067
      HTH_11 15 p.isgeeLAeeLnvSrrtvrr 34
                + is +e A  +++S rtv +
  CCE31370.1 19 YgISTKEVASITGISVRTVNK 39
                339****************86 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.058
      HTH_11  26 nvSrrtvrr 34 
                 n+Sr tv+r
  CCE31370.1 111 NISRHTVWR 119
                 9*******9 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   0.00082       0.7      11      32 ..      20      40 ..      12      81 .. 0.80
   2 ?   -0.9   0.1         2   1.7e+03      23      35 ..     111     123 ..     110     128 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00082
      HTH_29 11 GvstvsqiAkllglsrrtvyrw 32
                G s ++++A ++g+s rtv+++
  CCE31370.1 20 GIS-TKEVASITGISVRTVNKI 40
                666.99*************987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
      HTH_29  23 glsrrtvyrwlkr 35 
                 ++sr tv r+l++
  CCE31370.1 111 NISRHTVWRILRA 123
                 8999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1167.51
//
Query:       CCE31371.1  [L=860]
Description: uncharacterized protein CPUR_05224 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-16   58.5   0.0    9.2e-10   37.4   0.0    2.2  2  CRT10        CRT10
  ------ inclusion threshold ------
      0.033   13.6   8.4      0.045   13.2   8.4    1.1  1  SDA1         SDA1
        3.8    5.7   6.1        5.4    5.2   6.1    1.2  1  CDC45        CDC45-like protein


Domain annotation for each model (and alignments):
>> CRT10  CRT10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   1.5e-13   9.2e-10      37     290 ..      84     382 ..      49     390 .. 0.80
   2 !   18.8   0.0   6.3e-08   0.00038     596     644 ..     727     784 ..     718     804 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1.5e-13
       CRT10  37 lgFkNNlaviie.rsvlfiaagseieifdldklsalsktkvv.lreytkpsqvkledrlistspnphtinflkivnflGqevLvaciddGivllwevst 133
                 + + NNl ++++  +  f+a  s+i ++   +++     ++   +   + s v l+ r  +++  p  in l +  + ++e ++ c d+G v  ++++ 
  CCE31371.1  84 VPYRNNLTALSQkYNLYFTAYRSTIYVYVPRSVPRQTIPRHAdAQIRINISHVGLKIRGYASVIRPTMINQLVVGALGHEETVATCHDNGEVTAFYTKD 182
                 459*******99677889**********999998866555555666789999*********************************************** PP

       CRT10 134 iikefkkf..........ssdidegtsr...........ikikPd..lklrleasvWslDvidydsislialsdnsqgitllaydkdkerfyiek.eiq 208
                 i ++++            + +    tsr            + kP+  ++  +  s+W+l +   +++ lia+s+    it++a      +   ++ + +
  CCE31371.1 183 IAEYIRGRsnkspanttaTTET---TSRegrnflspapsRQKKPRpfFQENVGMSAWGLAIH--KQSRLIAVSSARYEITVFAPALKPLKPQTQPcDCN 276
                 ***9998888888886652222...33344466666655345555226666666*****955..*******************9987444444444222 PP

       CRT10 209 .........................tshnvPcvsfvknednseghitvayasisgevvtlkfkfkeedgplerlkiessildt...rfllgedcWTvtp 279
                                             n+  +sfv+++  ++   ++++ +i g +    + +k ++ +++ ++  s+ l +   ++  +++ W +  
  CCE31371.1 277 sccqdvedrvrrrarnwrivvtlgvEASNIHNISFVDDKHGNA--NKISAIDINGAMWLADI-WKPKQAAIRVMPSSSPLLYSsvyHNE-PSHGWGILA 371
                 445666789*************998889********9986555..599********999999.99999987777777777654222666.899999999 PP

       CRT10 280 iskkdFkevds 290
                 + +k+F+ v s
  CCE31371.1 372 LENKYFLTVHS 382
                 99999999986 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 6.3e-08
       CRT10 596 kssnRisivchIkeLsciivasqlGLisll...RLt....eyrGi..ysfRqEyilpw 644
                 + +nR+s+v hI+eL  i+++s +G + l+   RL     +  G+  +++R E++lp 
  CCE31371.1 727 HDTNRLSMVLHIPELYLIVIGSAIGRVMLItptRLAhpieKADGVlhHGLRLEWVLPR 784
                 457**********************666543339985554578*9999*********2 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   8.4   7.6e-06     0.045      91     169 ..     450     532 ..     387     618 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.6e-06
        SDA1  91 eeedsddeddeedwevesdddseedseggwidvesdee.........eieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeee 169
                 +++   + d ++d+e +++ d +ed+e g ++++sd           +++++d +++ e+ eeee  k++++++e + ++ + +   e
  CCE31371.1 450 DDNG-VNYDGDDDEEYDEEFDIHEDDEAG-VNIDSDVGgvgnpevfeSNNDED-NDSQEQVEEEE--KDDDDDDEPSFSDASGNGPLE 532
                 2222.223333344444433335555566.77777766999886653333233.22222222222..222222222222222222222 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.1   0.00091       5.4     106     169 ..     454     525 ..     403     623 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.00091
       CDC45 106 vfDDgdieeeleeereayealeeeeesdeede........eeeeeddddeeeeeeeeedeedeeedeeeskk 169
                 v  Dgd +ee +ee +  e  e   + d++          e+++++d+d++e+ eeee+++d++++ + s+ 
  CCE31371.1 454 VNYDGDDDEEYDEEFDIHEDDEAGVNIDSDVGgvgnpevfESNNDEDNDSQEQVEEEEKDDDDDDEPSFSDA 525
                 333444477777777777777777777644447777777744444444444333333333333332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 5669.01
//
Query:       CCE31372.1  [L=1214]
Description: uncharacterized protein CPUR_05225 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-15   56.1   0.0      3e-09   35.7   0.0    2.2  2  CRT10     CRT10


Domain annotation for each model (and alignments):
>> CRT10  CRT10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.6e-13     3e-09      35     294 ..      84     386 ..      62     394 .. 0.69
   2 !   18.0   0.0   3.7e-08   0.00066     596     643 ..     660     716 ..     649     734 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.6e-13
       CRT10  35 eglgFkNNlaviie.rsvlfiaagseieifdldklsalsktkvvlreytkpsqvkledr.listsp.nphtinflkivnflGqevLvaciddGivllwe 130
                 +  ++ NNl ++++  +  f+a  s i ++   +++     ++  + + ++s  ++      s+    ph in l++  +  +ev+v + ddG v  ++
  CCE31372.1  84 SMQDYRNNLTALSQkYNLYFTAYRSYIYVYVPRSVPRQTFPRH-ADAQIETSSSPAGRLvGGSVDEkAPHMINHLTVGALGQEEVVVTGHDDGDVTAFY 181
                 4446*******9996777899*********9999999554333.333444444444333255666689******************************* PP

       CRT10 131 vstiikefkkf....ssdidegtsr............iki.kPdlklrleasvWslDvidydsislialsdnsqgitllaydkdkerfyiek.eiq... 208
                 +++i  ++++     s +i    sr             k+  P +k  +  s+W+l +   +++ lia+s+n   it++a     ++   ++ +     
  CCE31372.1 182 TKEIADYISSRfntrSGNI---MSRggwnlsppapsrCKVpTPFFKENVGGSAWGLAIH--QQSRLIAVSSNRSEITVFAPALATSKPREQPcDCDvcc 275
                 ********98855552222...44444222233332255534667777888*****955..*****************998876555444444222457 PP

       CRT10 209 ......................tshnvPcvsfvknednseghitvayasisgevvtlkfkfkeedgplerlkiessildtrfllge.......dcWTvt 278
                                       + + +P + fv++e+ ++   +v++   +g +   ++ +k e+ ++ rl   s+ l+  +  ge         W + 
  CCE31372.1 276 hgvedkvrrrarnwrivvvlgsSFNRLPNIGFVDDENGNA--DKVIAIELTGAMWLANI-WKAEQAAI-RLAPSSQRLLMSMTKGEllspelaQGWGIL 370
                 7777779999999999999998889999999999986443..48888888888887777.77777752.443333333322222321111122458888 PP

       CRT10 279 piskkdFkevdsleal 294
                 p+ kk+F+ v s e++
  CCE31372.1 371 PLAKKYFLTVYSEEEV 386
                 8888888888776666 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 3.7e-08
       CRT10 596 kssnRisivchIkeLsciivasqlGLisll...RLt...eyrG.i..ysfRqEyilp 643
                   ++R+s+v hI+eL  ii++s++G + l    RL    e++G +  y++R E++lp
  CCE31372.1 660 SDTARLSMVSHIPELFLIIIGSPIGRVMLVtptRLAhpiEKAGgLlhYGLRLEWVLP 716
                 4469*********************7666434499755556664466********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 8300.81
//
Query:       CCE31373.1  [L=734]
Description: uncharacterized protein CPUR_05226 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-06   24.4   0.0     0.0053   15.0   0.0    2.2  2  CRT10           CRT10
  ------ inclusion threshold ------
       0.24   10.6   3.4       0.39    9.9   3.4    1.2  1  Herpes_LMP1     Herpesvirus latent membrane protein 1 (LMP1)
        1.3    8.1   6.8        2.1    7.4   6.8    1.2  1  Astro_capsid_p  Turkey astrovirus capsid protein


Domain annotation for each model (and alignments):
>> CRT10  CRT10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.9e-07    0.0053      84     245 ..     121     324 ..      73     370 .. 0.77
   2 !    7.3   0.0   0.00018       1.1     597     646 ..     606     664 ..     593     722 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.9e-07
       CRT10  84 psqvkledrlistspnphtinflkivnflGqevLvaciddGivllwevstiikefkkf...................ssdideg.tsr.ikikPdlklr 161
                 + +v+le ++++    ph i  l +  f  +ev+v+c   G +  + +  i +++                      + d  e   sr  + kP +   
  CCE31373.1 121 TPMVPLEAEELNRLDAPHIIRHLVVSGFGRNEVVVMCHGGGDITAFHTRDIAEYVYCQldttsenttastatvsgegH-DSPEPaPSRdKTPKPFFHEN 218
                 567888999999999*************************************99987788887777776666554422.22211355544555556666 PP

       CRT10 162 leasvWslDvidydsislialsdnsqgitllaydkdkerfyiek.eiq.........................tshnvPcvsfvknednseghitvaya 234
                 +   +W++    +++++lia++     it++a     ++   +  + +                             ++ vsfv+++  ++  ++v  +
  CCE31373.1 219 VGGWIWGVA--VHQKSQLIAVFTDRSNITVFAPALSRSKSQAQAcDREsccqgvedrvrrrarnwriivaqsdLAGGISNVSFVNDKYGNA--VKVCST 313
                 666777777..56******************98776555444443333457888899************99999999********998888..999999 PP

       CRT10 235 sisgevvtlkf 245
                 s +g v    +
  CCE31373.1 314 SFTGRVWLADI 324
                 99999877666 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00018
       CRT10 597 ssnRisivchIkeLsciivasqlGLisll...RLt....eyrGi..ysfRqEyilpwer 646
                 +s+++  v hI+eL   ++ s+lG + l    RL     +  G+  y++R E++lp   
  CCE31373.1 606 ISDKMDKVVHIPELFLLVIRSGLGRVMLVtptRLArpikKPTGVlrYGLRLEWVLPRRS 664
                 4599********************766643339974443568*999**********332 PP

>> Herpes_LMP1  Herpesvirus latent membrane protein 1 (LMP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.4   6.5e-05      0.39     305     376 ..     404     476 ..     392     486 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 6.5e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Herpes_LMP1 305 plphspsdsagndggppqlteeven.kggdrgpplmtdgggghshdsghgggdphlptlllgssgsggddddp 376
                   lp +p+  + ndggp ++ +e    +  d      t g + +++d+g+g  +     +l  ss s  + +d 
   CCE31373.1 404 DLPENPCTQSPNDGGPGNMMDETATyEWSDDETEPDTVGQSHEAEDNGDGDDNDDADYMLYDSSCSNSEAEDD 476
                  59*****************999765144555555567787888999999999999999999999987764432 PP

>> Astro_capsid_p  Turkey astrovirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.8   0.00035       2.1     230     281 ..     427     477 ..     394     485 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00035
                     ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX..XXXXXXX CS
  Astro_capsid_p 230 aeeeisdpsdeedeevsdeetdtevesdeDeddevdr..fDletsyeSeaeDdd 281
                     a+ e+sd++ e d  ++ +  ++e++ d D++d++d   +D  ++++SeaeDd 
      CCE31373.1 427 ATYEWSDDETEPD--TVGQSHEAEDNGDGDDNDDADYmlYDS-SCSNSEAEDDA 477
                     3455666555555..8889999999999999**999732455.5679*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5008.41
//
Query:       CCE31374.1  [L=517]
Description: probable ammonium transporter MEAA [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.2e-118  393.6  33.6   9.7e-118  393.3  33.6    1.1  1  Ammonium_transp  Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.3  33.6  5.4e-122  9.7e-118       1     399 []      38     443 ..      38     443 .. 0.97

  Alignments for each domain:
  == domain 1  score: 393.3 bits;  conditional E-value: 5.4e-122
                      HHHHHHHHHHHHHHHHHHHHHHHHSSGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCBSSSSSCE-.......TTTTSCCGCCTTCCHHHH CS
  Ammonium_transp   1 aflllsaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfign.......lglsaagvqdetlldglf 87 
                      af+l+sa lv++m++g+a+l++gl r+k++l++l+ +++++ v+v++++++Gyslafg+  ++++fig          +++ +v    ++++l+
       CCE31374.1  38 AFILVSACLVLLMVPGIAFLYSGLARRKSALSMLWVVMMSFSVIVFQWYFWGYSLAFGQT-SGNAFIGDlkhfglmKVWATPSVGSPLIPALLY 130
                      69********************************************************97.9*******988888666666677777788888* PP

                      HHHHHHHHHHHHHHHHHHCTTTB-HHHHHHHHHHHHHHTHHHHHHHHHS.SSHHHHTT--.-SSSTTTTHHHHHHHHHHHHHHHS-STTTTGTT CS
  Ammonium_transp  88 flfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlgkregrfegk 181
                       ++q++f+a++++++ gavaer ++ + ++f ++++tlvy+p+a+wvw+++gw+ k gvl D+Ag++ V + +g+++La+ +vlg+r++++   
       CCE31374.1 131 SFYQMMFCAVTAGLTVGAVAERGRVIPSMVFTFFWATLVYCPLAYWVWNANGWAFKNGVL-DYAGGVPVEIGSGMSALAYSWVLGRRNEKM--- 220
                      ************************************************************.****************************99... PP

                      TSS--GSBHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHH.HHHHHHHHHHHHHHHHHHHHHHHCSS-BHHHHHHHHHHHHHHHTTTTTTS-HH CS
  Ammonium_transp 182 eeaikghnlpfavlGtllLwfgWfgFNaGsaltankrararaavtTllAaaagaltallisrlkegkinvlglanGilAGlVAiTaacavvepw 275
                      ++++++hn+++++lGt++LwfgW+gFN+Gsa++an ra   a+ +++l a+++a+t++l++    +k++++g ++G+++GlVA+T+a ++++pw
       CCE31374.1 221 MMNFRPHNISLITLGTVFLWFGWLGFNGGSAFGANLRAVM-ACWNSCLTAMFAAMTWCLLDFRLAKKWSMVGWCSGTISGLVAATPASGFIDPW 313
                      9**************************************9.***************************************************** PP

                      HHHHHHHHHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHHHHHTSHHHC.....SSHSSTTGGGT-CHHHHHHHHHHHHHHHHHHHH CS
  Ammonium_transp 276 gAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv.....askisggllsgegkqlvvqligilvilayafvv 364
                      +++i+G+vAgv +++g+k +k  ++idDsldv+a Hg+gGi+Gl+++++fa+ kv        + sgg++ g++k +++q+++i+++ ayafv+
       CCE31374.1 314 ASIILGVVAGVCCNFGTK-IKFLVRIDDSLDVFAEHGIGGIVGLIFNAFFATGKVIgldgvNVGASGGFIDGNYKVIGWQIAAIVAASAYAFVM 406
                      *****************8.***********************************99***999999***************************** PP

                      HHHHHHHHHHHTT..SB--HHHHHHSHHHHHHSSSSB CS
  Ammonium_transp 365 tlilllllklllg..LrvseeeeevglDvaehgetay 399
                      + i+++l++l++g  Lr see+e +g+D +eh e+ y
       CCE31374.1 407 SAIIAKLIDLVPGlkLRASEEAELLGMDDSEHSEFSY 443
                      ***********998899*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3673.34
//
Query:       CCE31375.1  [L=607]
Description: related to phytase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-48  166.6   0.0    1.3e-48  166.3   0.0    1.1  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)
  ------ inclusion threshold ------
       0.19   11.5   0.0       0.41   10.5   0.0    1.5  1  PUA_3       PUA-like domain


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.3   0.0   1.4e-52   1.3e-48       2     370 ..     190     517 ..     189     542 .. 0.92

  Alignments for each domain:
  == domain 1  score: 166.3 bits;  conditional E-value: 1.4e-52
                 EEEEEEEEE--SBB-SHHHHHHHHHHHHHHHH.........HHCHHTGCCGGGGT.........--SSSTTS.B-HHHHHHHHHHHHHHHHHCHTCCHT CS
  His_Phos_2   2 LksvvvviRHGdRtPkqkvkksvtspiflsllkkhkeKlkqlktalekkghfpgtyrkveveklqlilkwggelthaGrkqaeelGrqfrqrYplgLlr 100
                 + ++++++RHG+R+P++   +    ++ ++ +            +  + + f+ ++        +++l+ +  l+++Gr++++++G     +Y  gL++
  CCE31375.1 190 ILQLQMLSRHGARYPTSHADVARLGDKIANAS---------GVFQPRGILTFLHDW--------KYELGSEI-LVPRGRQELFDSGVLHSYMYG-GLYN 269
                 6799***************7655555555555.........889999999***999........99999999.*********************.**** PP

                 TSS--TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTTSHHTCHHHCHHHTGGHCHHHHCHCCCCC CS
  His_Phos_2 101 lhltykdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaakdlldeakkklkelltegaeacpafewpikvakrvdelvkylkedm 199
                 ++   +++ +r++ ++R+++SA++++ G++gle               ++na   ++ e  +k+ +++++ga +cp+  +    ++ +d  +k +  ++
  CCE31375.1 270 PQ---SKIIVRTTTQDRMLKSAENWMAGFFGLEW--------------TNNATIEVIIE--EKGFNNSLAGALNCPNAHN----KTSGDSPQKTWMYEY 345
                 *8...59***********************8888..............88888888888..78999999*********99....*************** PP

                 HHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHHHHCT-TTGGGCTH..HCHHHHHHHHHHHHHHHC........TTTCCCCHHHHHHHHHHHHHHHC CS
  His_Phos_2 200 deniakrleqlcpgesnllakerwdklercfyeknkfdiskicdlydemkydalhnrylkdleelyklakvipqEygigpeeklkiGllllnpllkkil 298
                  + +++r++++  g  +++ +++++   +c ye+ ++++sk+cdl++   ++++ ++y +dl     +        g+ ++++++iG+++ ++++++++
  CCE31375.1 346 LKDAQERFQAMTEGF-TWTIEDVYAAQTMCPYETVAYGFSKFCDLFTY--QEWRDFGYSVDLWFSSSN--------GFHSPTGRAIGIGYQQEIMARLK 433
                 ***********9998.********************************..************988888........*********************** PP

                 TSSSEECCS..........CCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS...TTT..HCCCS-CT-EEEEEEEEE CS
  His_Phos_2 299 ndlqrtree..........atperhvrlrlyfthdshiysllnaLglpeelagedslaa..ldrlsaspelpymsqivfelyed 370
                 n++   + +           t++ +++l+++f+hd++i+s+l+a+gl + ++++  +++   ++++ s+++p+++++ +e  + 
  CCE31375.1 434 NHTLGYSGSqinttldnntETFPLNQTLYFDFSHDTNIVSILTAFGLTQFAEDLPATRYpgPHNFTISHMVPFGARLDMEIIQT 517
                 ***9999889********************************************99999*********************9995 PP

>> PUA_3  PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.6e-05      0.41      49      61 ..     266     278 ..     260     281 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.6e-05
       PUA_3  49 GyynpqskiavRi 61 
                 G+ynpqski+vR 
  CCE31375.1 266 GLYNPQSKIIVRT 278
                 9***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4476.66
//
Query:       CCE31376.1  [L=194]
Description: uncharacterized protein CPUR_05229 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1456.71
//
Query:       CCE31377.1  [L=361]
Description: uncharacterized protein CPUR_05230 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-21   75.8   0.0    9.7e-10   38.7   0.0    2.1  2  TauD      Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
      0.028   13.5   0.0      0.043   12.9   0.0    1.2  1  CsiD      CsiD


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   1.1e-13   9.7e-10      10     158 ..      88     234 ..      76     246 .. 0.82
   2 !   35.5   0.0   9.9e-13   8.9e-09     199     267 ..     241     312 ..     234     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.1e-13
        TauD  10 gaegvdlsdleslddelkeelrellaeygvvvfrgfpl...speqqlefarrfGplygtpgrgtntkygevld....vssvyesadianlayttll..w 99 
                  +++++l++   l+ +l++  +e++++ g+ ++rg++    s e++  ++ ++ ++y+    g+++k g++l+     +s  ++  +++  + t++  +
  CCE31377.1  88 RRNNFQLPT---LEGDLNHLQNEIHNGKGFGLIRGLEPqrySVEDLTTIYLGL-QSYIADLQGRQDKKGNMLVhiiaDNS--TKMRASHHRHSTSPitF 180
                 344899999...5555588999999**********988899************.*******************9976333..33333333333333558 PP

        TauD 100 HtDlsylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyh 158
                 H++ +      +++    +  +a GG  ++++++a+ynaL +++p+l++ l+  ++++ 
  CCE31377.1 181 HNEEA-----GDVVSWLTRSTAAAGGKCIIASSYAIYNALVASRPDLVRVLARSDWPFA 234
                 ***99.....999999999999*******************************999985 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 9.9e-13
        TauD 199 n..ppfatrieglgtpeskelldaleelledpeftyrfqwqeGdlvifdNrrvlHgrtaf....degeeRhllrc 267
                 +  +p+ + + +  t  + e+lda+e++++  + +++++ ++Gd+ +++N++vlH+r+ f    ++ e+Rhl+r+
  CCE31377.1 241 SasHPRPANL-PQLTSLQLEALDAIEAIAK--ATQLEIETRAGDIHLINNLAVLHRREGFvdgsSSMEKRHLVRM 312
                 4445666666.77778999**********8..****************************6554444889**997 PP

>> CsiD  CsiD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.8e-06     0.043     245     292 ..     262     313 ..     244     315 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.8e-06
                 HHHHT-T..T-EEE---TT-EEEEETTTEEEEE--B---TT.-.EEEEEEEE CS
        CsiD 245 eslensk..kklevkvpvGslllinnlfwlhGrdkfeenee.l.rreLlrqr 292
                 +++e+ +  ++le++  +G++ linnl+ lh r+ f +  + + +r L+r r
  CCE31377.1 262 DAIEAIAkaTQLEIETRAGDIHLINNLAVLHRREGFVDGSSsMeKRHLVRMR 313
                 667765400566778889******************9754313378999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.48
# Mc/sec: 2279.09
//
Query:       CCE31378.1  [L=810]
Description: uncharacterized protein CPUR_05231 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.018   15.2   6.1      0.031   14.4   6.1    1.4  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain
      0.077   13.2   0.0       0.15   12.2   0.0    1.4  1  CGGC      CGGC domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   6.1   3.5e-06     0.031       2      26 ..     411     439 ..     410     454 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.5e-06
                 S-HHHHHCT---ST.....SSSS-HHHHHC CS
     Zn_clus   2 aCdnCrkkKvKCda.....kkPaCsnCkkl 26 
                 +C++Cr ++++C++     + P C  C k+
  CCE31378.1 411 SCIRCRMQRIRCERnpnetGGP-CLTCLKV 439
                 8************976655555.****986 PP

>> CGGC  CGGC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.7e-05      0.15       5      77 ..     420     502 ..     416     513 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
        CGGC   5 irCekved..vCpgvkClkalkerkgaFeeyeeevelvgfvtCggCpgkkvveklkelk........kegvdvihlssCiktk 77 
                 irCe++ +  + p+ +Clk+++ ++g F  ++ +++ + +++ g  pg +++++ ++ +        +++v++ih+s+  ++k
  CCE31378.1 420 IRCERNPNetGGPCLTCLKVANTKAGRFPCLRYKITDIKLFKSGQVPGFEWTQRWANNItdpiqkwaSTEVKIIHISTTYSKK 502
                 899999543588889**************99988999999999999777777776665557777777**********997333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 6015.34
//
Query:       CCE31379.1  [L=579]
Description: uncharacterized protein CPUR_05232 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.044   13.1   0.0      0.092   12.1   0.0    1.5  1  Pkinase      Protein kinase domain
      0.072   12.4   0.1        1.2    8.4   0.0    2.5  3  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     1e-05     0.092      70     142 ..     276     352 ..     234     361 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1e-05
                 SSEEEEEEE--TTEBHHHHHH...HHSS--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SG CS
     Pkinase  70 kdelylvleyveggeladlle...rkgslseeeakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDF 142
                 +  + + l y  +g+l dl+     +g++s ++  ++  q+ ++l +lH  ++ ++ Dl  +N+ ++ +++  ++DF
  CCE31379.1 276 TAVIGFTLKYHLHGSLRDLIPflqLHGQVSLADKTRWSLQLSSALLHLHhVAHSFYPDLRLDNVVLSASRDAIMVDF 352
                 3344478888899998888776668899********************9556799************8888778888 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00013       1.2      72     147 ..     275     352 ..     233     355 .. 0.72
   2 ?    0.7   0.0     0.029   2.6e+02     183     207 ..     428     452 ..     413     488 .. 0.81
   3 ?   -2.1   0.0       0.2   1.8e+03     241     258 ..     549     566 ..     539     567 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00013
                  SSSSEEEEEE--TTEBHHH...HHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT.TEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr  72 keepllivteyvkgGdLlk...fLrkkekekltlkdllsfalqvAkGmeyLesk.klvHrdlaarNvLlsenkvvkisDf 147
                  k+  + + ++y  +G+L++   fL+ +   +++l d+++++lq+++++ +L++  +    dl+  Nv+ls ++ + + Df
   CCE31379.1 275 KTAVIGFTLKYHLHGSLRDlipFLQLH--GQVSLADKTRWSLQLSSALLHLHHVaHSFYPDLRLDNVVLSASRDAIMVDF 352
                  344455567888889777633366666..99********************986257899**********9998888887 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.029
                  EHHHHHHHHHHHHHHHHTTSSGTTT CS
  Pkinase_Tyr 183 tsksDvWsfGvllwEiftlgespyp 207
                  +++  v++ G +lw if+ ++ p +
   CCE31379.1 428 QEACEVYMLGRVLWCIFEACSAPQR 452
                  67889***************99975 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.2
                  HT-SSGGGS--HHHHHHH CS
  Pkinase_Tyr 241 cweedpeeRptfselvek 258
                   w+e+  eRp+++e+ + 
   CCE31379.1 549 TWNENYYERPSLKEVCDA 566
                  7************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4398.96
//
Query:       CCE31380.1  [L=116]
Description: uncharacterized protein CPUR_05233 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-18   66.6   0.2    2.5e-18   65.7   0.1    1.5  2  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    8.1e-05   22.2   0.0    9.3e-05   22.0   0.0    1.1  1  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.17   11.8   0.0    1.2  1  RRM_occluded  Occluded RNA-recognition motif
       0.12   12.2   0.0       0.17   11.7   0.0    1.2  1  DUF4523       Protein of unknown function (DUF4523)


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.1   5.5e-22   2.5e-18       1      69 [.      16      82 ..      16      83 .. 0.93
   2 ?   -2.7   0.0       1.2   5.2e+03      46      59 ..      86      99 ..      84     109 .. 0.64

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 5.5e-22
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69
                lfV+nL+++vt eeL +lF+kfGpi+ ++      + +kg+afV +e+  dA++A ++lng ++++r l
  CCE31380.1 16 LFVKNLSYSVTPEELFDLFGKFGPIRQVRQGI--SNATKGTAFVVYEDVMDAKQACDKLNGFNFQSRYL 82
                8************************7777666..689****************************9976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
                ESSHHHHHHHHHHH CS
       RRM_1 46 FeskedAekAleal 59
                ++++e + k +e l
  CCE31380.1 86 YHQPEKMIKSKEDL 99
                56666666665554 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.1e-08   9.3e-05      26      97 ..      13      84 ..       2     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.1e-08
       RRM_5 26 gsVllVyglepdkvnldklFnlfclYgnvervk..flktkketalvqmgdasaveravqHLnnaklfgkrleva 97
                +  l+V +l    v++++lF lf+ +g +++v+  +    k+ta+v   d +++++a + Ln+ +   + l v+
  CCE31380.1 13 NRALFVKNLSY-SVTPEELFDLFGKFGPIRQVRqgISNATKGTAFVVYEDVMDAKQACDKLNGFNFQSRYL-VV 84
                66788999976.699*****************86678889***********************98644444.33 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.8e-05      0.17       4      68 ..      16      82 ..      13      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
  RRM_occluded  4 isllplsDtvnkariralveekegeikki...vLvpdheGAivefkdekiagkasLaLdgsefegkkl 68
                  + + +ls  v+ +++ +l+ +  g+i+++   +  + ++ A+v+++d+++a +a  +L+g +f+ + l
    CCE31380.1 16 LFVKNLSYSVTPEELFDLFGKF-GPIRQVrqgISNATKGTAFVVYEDVMDAKQACDKLNGFNFQSRYL 82
                  5566888889999999999999.66666633367889999************************9876 PP

>> DUF4523  Protein of unknown function (DUF4523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.7e-05      0.17      96     144 ..      19      71 ..      11      89 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.7e-05
     DUF4523  96 knlkptedlksviqrLsvfGpiesv....tlcGrqsavvvfkdiisackavsa 144
                 knl+ + + + +      fGpi+ v    +   + +a vv++d++ a +a   
  CCE31380.1  19 KNLSYSVTPEELFDLFGKFGPIRQVrqgiSNATKGTAFVVYEDVMDAKQACDK 71 
                 89999999999999999*****8762222678999*********998887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 983.76
//
Query:       CCE31381.1  [L=475]
Description: related to 5-methylcytosine G/T mismatch-specific DNA glycosylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-05   25.5   0.0    2.6e-05   24.6   0.0    1.4  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.4e-09   2.6e-05       9     101 ..     256     363 ..     252     386 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.4e-09
                 S-HHHHHHHHHHHHHHHSHCSHHHHHHSH.HHHHHHHHTTSTTHHHHHHHHHHHHHHHH................S-SSS--TTSHHHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD   9 tsderanriierlferfgfptpedladad.eekLrelirelGfyrrKakyikelArilv................gkpdvlivvDvhvrrilkrlrsik 90 
                 t+ ++a +++ ++++r  fp+p +lad    ++L ++ir+lG+++++ k+i++ A  ++                ++ d+l   D +++  ++   s+ 
  CCE31381.1 256 TNGQVAIPVFYKVKQR--FPSPTELADPRnAQELLSMIRHLGLSTNRLKQIQKYASRFLeapptagilhrvrdydARDDPLESGDSGDASCVSPNASLT 352
                 7888999999******..8*********999************************99998888888888888888666677666766666666655555 PP

                 SSTTHHHHHHH CS
                 xxxxxxxxxxx RF
     HhH-GPD  91 ekktkkkvekk 101
                 ++ ++ k+ + 
  CCE31381.1 353 PDTSAGKASRN 363
                 55555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3554.62
//
Query:       CCE31382.1  [L=316]
Description: related to surfeit locus protein 4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-90  302.1  11.1    3.2e-89  299.1  11.1    1.9  1  SURF4           SURF4 family


Domain annotation for each model (and alignments):
>> SURF4  SURF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.1  11.1   1.8e-93   3.2e-89       4     267 .]      38     316 .]      35     316 .] 0.92

  Alignments for each domain:
  == domain 1  score: 299.1 bits;  conditional E-value: 1.8e-93
       SURF4   4 iakiedlaetllrktkkylPtlarlllvatfleDglrllfqwsdqveyldkskk...lgyf............latllvlvvllglligsllvvlrkkv 87 
                  +k+ed+ ++l + +k+ylP ++r+l+v tf+eD+lr+++qw dq  yl+++++    ++f            l+ +++l+++ +++  s+lv++rk+ 
  CCE31382.1  38 TSKVEDVLDSLSEPLKPYLPAIGRFLIVVTFIEDALRIIMQWRDQLLYLHDYRSskqASFFvlrsssvrvpngLTHMFLLINVAAMVSCSTLVIARKHS 136
                 689**********************************************9876511133432222222222225679********************** PP

       SURF4  88 ayavgvLlfivilqaiaYslltdlklllrnlsvigglllllaesliekkslfaglPeleeeekaksylllagrvllvlmfisllafe.lsftrvlltii 185
                 +yav+ L+ +v++qa+ Y+l+ dl++++rnlsviggll++l++s ++k + faglP+l+e ++ k y++lagrvll+++fi+++++   s++r+l++++
  CCE31382.1 137 DYAVAGLMGVVVTQALGYGLIFDLNFFFRNLSVIGGLLMVLSDSWVRKTKAFAGLPQLDE-KDRKMYFQLAGRVLLIFLFIGFVFTGqWSVWRILVSLL 234
                 ***********************************************************9.899********************98659********** PP

       SURF4 186 gvaliilvviGfktklaalvLvllLfvlnlvlnafWtipkekelrdflkYdffqtlsviGGLLlvvatGpGelsvDekkkky 267
                 g +++i+vv+Gfk+k++a +Lv++L+++nl++n+fWt+ ++++ +df kYdffq ls++GGLLl+v+ GpG++s+Dekkk y
  CCE31382.1 235 GAGACIMVVVGFKAKFSATLLVVILSIFNLFVNNFWTLHEHHPHKDFAKYDFFQILSIVGGLLLLVNSGPGQFSIDEKKKVY 316
                 ********************************************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2470.85
//
Query:       CCE31383.1  [L=638]
Description: related to CDC14-dual specificity phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-40  137.7   0.0    4.7e-38  130.8   0.0    2.4  2  DSPn           Dual specificity protein phosphatase, N-termin
    1.9e-16   60.1   0.0    4.6e-16   58.9   0.0    1.6  1  DSPc           Dual specificity phosphatase, catalytic domain
    3.5e-05   23.5   0.1    0.00013   21.7   0.0    1.8  2  Y_phosphatase  Protein-tyrosine phosphatase
  ------ inclusion threshold ------
      0.091   12.4   1.3       0.38   10.4   0.1    2.1  2  CDKN3          Cyclin-dependent kinase inhibitor 3 (CDKN3)


Domain annotation for each model (and alignments):
>> DSPn  Dual specificity protein phosphatase, N-terminal half
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.0   1.1e-41   4.7e-38       3     141 .]      17     185 ..      15     185 .. 0.84
   2 ?    4.4   0.0     0.011        47      83     107 ..     340     364 ..     309     372 .. 0.86

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 1.1e-41
        DSPn   3 ikdrLyfatlkkkpketen................................vhyfsiddelvYenFyaDFGPlnlaqlyrfcvkvnkkLkskelskkki 69 
                 i+drLy+ ++ ++p++ ++                                 +yf++dd+l Y+ F++DFGP+++++lyrf+++ +++L +ke++++ +
  CCE31383.1  17 IPDRLYLGAYVQPPTT-DTlfpgseppasprkrghraadsvsssvskgrlpPCYFTVDDSLLYNAFHHDFGPFHIGHLYRFAIRFHDILGAKENKDRPV 114
                 6666666665543333.222344455555555666666666666666666689********************************************** PP

        DSPn  70 vhytsadekkranaafLigaYavivlklspeealkplasqekppllpFrDaslgectyeltlldclkglekA 141
                 v+ + ad+++ranaa+++++Y+v+++++ p+ al+p+a+  +ppl+pFrDa++++++y +t++d+++g++kA
  CCE31383.1 115 VFWSAADPRSRANAACMLACYMVLIQNWPPHLALAPIAQV-DPPLMPFRDAGYSQADYGITVQDVVYGVWKA 185
                 ***************************************5.9*****************************8 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.011
        DSPn  83 aafLigaYavivlklspeealkpla 107
                 + +LigaY++  ++++++e+++ ++
  CCE31383.1 340 TGCLIGAYLIYRHGFTADEVISFMR 364
                 569****************998776 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0     1e-19   4.6e-16      18     127 ..     271     379 ..     258     384 .. 0.83

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 1e-19
                 TCSEEEEESSSSSECECCTTTTSEEEEEC.CESSTTSCCGGGHHHHHHHHHHH....HHTT-EEEEEESSSSSHHHHHHHHHHHHHHTSCHHHHHHHHH CS
        DSPc  18 gitlvinvtkevpnanalkkseieklrip.vedehetkiskyleeavefidka....kqkgkkvlVHCqaGisRSatliiaYlmktknlslneayeflk 111
                 +i lv+ +      +++++ s +e l i+ v+   ++ +++ l  + +fi+ a      k+k ++VHC+aG+ R+++li aYl+++++++++e ++f++
  CCE31383.1 271 EIGLVVRLN-----SHLYSPSYFEALGIQhVDMIFDDGTCPPLTTVRKFIRLAhetiLIKKKGIAVHCKAGLGRTGCLIGAYLIYRHGFTADEVISFMR 364
                 555555444.....36789999*******7777*****************97744445699************************************** PP

                 HHSTT-SSTHHHHHHH CS
        DSPc 112 errpaispnagfirqL 127
                   rp ++    ++++L
  CCE31383.1 365 FMRPGMVVG-PQQHWL 379
                 ***999887.555555 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.8e-08   0.00013     157     225 ..     313     376 ..     301     381 .. 0.77
   2 ?   -1.5   0.1      0.33   1.5e+03     154     188 ..     580     615 ..     515     633 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.8e-08
                    HHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHTTSTTSS-SHHH CS
  Y_phosphatase 157 klirkvekskeaksgpvvVhCsaGvgRtgtfvaldillqqleaeeevdvlqivkelrkqRpgmvqtleq 225
                    k+ir +++    k++ + VhC+aG gRtg+++ + +++++  +       ++++ +r +Rpgmv   +q
     CCE31383.1 313 KFIRLAHETILIKKKGIAVHCKAGLGRTGCLIGAYLIYRHGFT-----ADEVISFMRFMRPGMVVGPQQ 376
                    4555555555556899*****************9998877555.....678889999999999976666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.33
                    HHHHHHHHHHHHH.STTSS-EEEECSSSSHHHHHHH CS
  Y_phosphatase 154 sllklirkveksk.eaksgpvvVhCsaGvgRtgtfv 188
                    s  ++++kv++sk   +++p+    saG+ +t+  v
     CCE31383.1 580 STPSVMTKVRTSKrAGSESPLRAKESAGIRKTSGRV 615
                    344778888888866778899999999998886544 PP

>> CDKN3  Cyclin-dependent kinase inhibitor 3 (CDKN3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   8.4e-05      0.38     101     157 ..     293     350 ..     281     359 .. 0.71
   2 ?    0.2   0.1      0.12   5.2e+02      11      41 ..     503     533 ..     495     536 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.4e-05
                 -EEEE---.-TTS---HHHHHHHHH.HHHHHHHTT--EEEE-SSSSSHH.HHHHHHHHHH CS
       CDKN3 101 ivthhhpi.adggtpdiascleime.elatclknyrktlihcygglgrs.clvaacllly 157
                 i  h   i  dg  p ++++ + +     t l +++   +hc  glgr+ cl+ a l+ y
  CCE31383.1 293 I-QHVDMIfDDGTCPPLTTVRKFIRlAHETILIKKKGIAVHCKAGLGRTgCLIGAYLI-Y 350
                 4.4555551556668888887766514568888888999*********7588777664.3 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.12
                 XXXXXXXXXXXXBTS----EEEE-GGGT-SS CS
       CDKN3  11 efdssdeepveeeqtpiqiswlslsrvncsq 41 
                 e  s dee v + +  +++     sr  csq
  CCE31383.1 503 EEKSLDEERVTDSDEEMRVRVSRSSRKACSQ 533
                 66789******9999999999999*****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4461.63
//
Query:       CCE31384.1  [L=111]
Description: uncharacterized protein CPUR_05237 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-30  105.2   0.1    1.7e-30  104.9   0.1    1.1  1  Pcc1      Transcription factor Pcc1


Domain annotation for each model (and alignments):
>> Pcc1  Transcription factor Pcc1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.1   9.6e-35   1.7e-30       1      74 []      10      94 ..      10      94 .. 0.90

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 9.6e-35
                EEEEEEE-SSHHHHHHHHHHHHHHCHC-TTECEEEEEEETT.............EEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHH CS
        Pcc1  1 sltisvpfpterlAsialrtLqvDkelsplavkrslslegn.............vLqveykAttnrmLRvavngfleslglvletme 74
                s+++++p++t+rlA+ial++LqvD+elspl v+r++s+ g+             vL+v+y+AttnrmLRvavn+f++sl+lvle+me
  CCE31384.1 10 SISLQIPLSTARLATIALQALQVDPELSPL-VQRKFST-GPeakdgdeggsgasVLTVHYQATTNRMLRVAVNSFMDSLKLVLEVME 94
                6899**************************.******9.333555556666666********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 829.35
//
Query:       CCE31385.1  [L=750]
Description: NUC-1 transcription factor NUC-1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-11   43.3   0.4    6.4e-11   42.0   0.4    1.7  1  HLH       Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
       0.26   11.7   0.1       0.26   11.7   0.1    5.0  5  ZapB      Cell division protein ZapB


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.4   7.2e-15   6.4e-11       1      53 []     642     724 ..     642     724 .. 0.92

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 7.2e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHCST..............................CSTTSS..-STHHHHHHHHHHHHHHHH CS
         HLH   1 rraahnerErrRRdriNsaleeLrellP..............................slppsk..KlsKaeiLekAveYIkhLq 53 
                 +r++h+++E+ RR+riNsal+   +llP                              +++     ++sKa+++e A+ ++khLq
  CCE31385.1 642 KRTSHKIAEQGRRNRINSALQIMASLLPdqqklkecaaeeaaeakenkgekgekgenkGDK--GnlPNSKASVVESAIVHMKHLQ 724
                 79************************************************99877654444..156******************9 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.8  23.5         2   1.8e+04      24      60 ..      57      93 ..      48      98 .. 0.71
   2 ?   -2.9   0.9       1.1   9.7e+03      52      59 ..     161     168 ..     149     173 .. 0.45
   3 ?    0.2   0.8      0.12     1e+03      44      57 ..     427     440 ..     411     483 .. 0.74
   4 ?   -0.9   1.3      0.26   2.3e+03      12      45 ..     656     689 ..     654     702 .. 0.64
   5 ?   11.7   0.1   2.9e-05      0.26      13      44 ..     713     744 ..     711     747 .. 0.88

  Alignments for each domain:
  == domain 1  score: -7.8 bits;  conditional E-value: 2
        ZapB 24 qmeieeLkeeneelkeenreleeeneqlkeereawqe 60
                q++ ++ ++++++   ++++  +  +ql++e++++qe
  CCE31385.1 57 QQQQSQQQQQQQQHHHQQQQQLHHQQQLQQEQQQQQE 93
                5666666777777777777777888888888888887 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.1
        ZapB  52 keereawq 59 
                  +++ ++q
  CCE31385.1 161 HQQQRQLQ 168
                 22222222 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.12
        ZapB  44 leeeneqlkeerea 57 
                  ee+n++ ++++++
  CCE31385.1 427 TEEQNQRRRQQQQQ 440
                 23556655555555 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.26
        ZapB  12 kiqkaidtitlLqmeieeLkeeneelkeenrele 45 
                 +i++a++ +++L    ++Lke  +e + e++e +
  CCE31385.1 656 RINSALQIMASLLPDQQKLKECAAEEAAEAKENK 689
                 7777777777777777777776666666555544 PP

  == domain 5  score: 11.7 bits;  conditional E-value: 2.9e-05
        ZapB  13 iqkaidtitlLqmeieeLkeeneelkeenrel 44 
                 +++ai  +++Lq+e+ +L+ee+e l +e +++
  CCE31385.1 713 VESAIVHMKHLQEENGQLREEVEGLRRELERV 744
                 688999999*************9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4133  (0.23052); expected 358.6 (0.02)
Passed bias filter:                     1047  (0.058397); expected 358.6 (0.02)
Passed Vit filter:                       279  (0.0155614); expected 17.9 (0.001)
Passed Fwd filter:                        96  (0.00535445); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.58u 0.38s 00:00:01.96 Elapsed: 00:00:00.56
# Mc/sec: 4009.63
//
Query:       CCE31386.1  [L=744]
Description: uncharacterized protein CPUR_05239 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0084   15.7   0.0      0.015   14.8   0.0    1.3  1  Nitrate_red_gam  Nitrate reductase gamma subunit
  ------ inclusion threshold ------
      0.029   14.3   3.2      0.095   12.7   3.2    1.9  1  Gram_pos_anchor  LPXTG cell wall anchor motif
      0.033   14.5   7.9       0.12   12.7   0.2    4.5  5  Kelch_3          Galactose oxidase, central domain
        0.2   11.7   6.2       0.57   10.2   0.0    3.9  4  Kelch_4          Galactose oxidase, central domain
        0.7   10.0   1.8        1.3    9.2   1.8    1.4  1  CcmD             Heme exporter protein D (CcmD)
        3.1    7.8  18.7       0.21   11.6  12.4    2.4  2  Mucin            Mucin-like glycoprotein
        3.8    7.6   8.1        4.9    7.3   0.0    4.1  5  Kelch_5          Kelch motif


Domain annotation for each model (and alignments):
>> Nitrate_red_gam  Nitrate reductase gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     6e-06     0.015      72     117 ..     389     434 ..     385     440 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6e-06
  Nitrate_red_gam  72 vtealgvseelyqllalvaGliagvlalvGlllLllRRltnkrvra 117
                      + +      + + +l +++G+iag+l+l+GlllLllRR+ n+  r+
       CCE31386.1 389 WAQPEDSVPSSNAILGITLGSIAGALVLLGLLLLLLRRRKNTLTRS 434
                      55555555666788899*********************99876655 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.2   3.7e-05     0.095      21      41 ..     409     429 ..     405     430 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.7e-05
                      XXXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  21 taaGllallggllLlvkrRKk 41 
                       +aG+l+llg llLl++rRK+
       CCE31386.1 409 SIAGALVLLGLLLLLLRRRKN 429
                      59******************7 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       3.3   8.4e+03      18      26 ..      19      27 ..      17      41 .. 0.75
   2 ?   12.7   0.2   4.8e-05      0.12       4      49 .]      68     114 ..      65     114 .. 0.87
   3 ?    3.3   0.0      0.04     1e+02       2      39 ..     118     156 ..     117     163 .. 0.61
   4 ?   -3.9   0.1         7   1.8e+04       5      18 ..     177     188 ..     175     192 .. 0.58
   5 ?   -1.5   0.0       1.3   3.4e+03      11      27 ..     221     237 ..     219     241 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.3
     Kelch_3 18 lndvyvydl 26
                +n++y+y+ 
  CCE31386.1 19 NNTLYSYSS 27
                677777764 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.8e-05
     Kelch_3   4 lyifGGlgddgqdrlndvyvydldtntWaeiaslpp...aRaghaatai 49 
                 ++++GG    g d +  +  y  +t++W+++ +++     R +h++++i
  CCE31386.1  68 FFVIGGQS--GSDDYTGLQKYTYSTGKWTTVKPSNLvtkHRQWHSSAYI 114
                 89******..*******************9955544448******9987 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.04
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtn.tWaeiaslpp 39 
                 d++++fGG+ d+   ++ d+++++ + + t+ + ++ p 
  CCE31386.1 118 DTILVFGGNQDGKLGPSADTFSISASEPyTVLTPPPRPA 156
                 789*******65455567777777776643334433333 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 7
     Kelch_3   5 yifGGlgddgqdrl 18 
                   +GG +  g +++
  CCE31386.1 177 IMVGGGT--GAENT 188
                 5567777..55544 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1.3
     Kelch_3  11 gddgqdrlndvyvydld 27 
                 + +g+d++ +++++d++
  CCE31386.1 221 CISGTDGSTSLLMFDTS 237
                 557999********986 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1         2     5e+03       6      16 ..      13      23 ..      13      25 .. 0.89
   2 ?    1.2   1.0      0.14   3.7e+02      16      46 ..      69      98 ..      64     103 .. 0.67
   3 ?   10.2   0.0   0.00022      0.57       2      38 ..     106     144 ..     105     161 .. 0.80
   4 ?   -1.4   0.0      0.94   2.4e+03      10      24 ..     172     186 ..     169     191 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
     Kelch_4  6 satsipdgtiy 16
                s+t+i+++t+y
  CCE31386.1 13 SCTVIYNNTLY 23
                79*******99 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.14
     Kelch_4 16 ylfGGrgedgtllndlylldlstntWrrlgs 46
                +++GG+++ +  +  l ++  st++W+++++
  CCE31386.1 69 FVIGGQSGSD-DYTGLQKYTYSTGKWTTVKP 98
                6777777775.33333446678999999954 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00022
     Kelch_4   2 Raghsatsi.pdgtiylfGGrgedg.tllndlylldlst 38 
                 R+ hs+ +i  ++ti +fGG ++   ++++d++ +++s 
  CCE31386.1 106 RQWHSSAYIeASDTILVFGGNQDGKlGPSADTFSISASE 144
                 777999999666***********5599999999988775 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.94
     Kelch_4  10 ipdgtiylfGGrged 24 
                 ++ + i + GG g++
  CCE31386.1 172 TDADLIMVGGGTGAE 186
                 566778888888765 PP

>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.8    0.0005       1.3      14      35 ..     412     433 ..     410     437 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0005
        CcmD  14 tllvlagLilwslrdrrrllre 35 
                  +lvl+gL+l+ lr+r+ +l++
  CCE31386.1 412 GALVLLGLLLLLLRRRKNTLTR 433
                 59****************9987 PP

>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  12.4   8.1e-05      0.21      26     101 ..     326     401 ..     287     411 .. 0.70
   2 ?   -2.6   0.4         2   5.1e+03      98     107 ..     693     702 ..     652     724 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.1e-05
       Mucin  26 ngeGqsdaavveaaegqskltttttttkppttttttt.tasttittkttkattttttttttttateaPsdavttaea 101
                  ++G  +++++ +++ q+ l +t+ttt +++++t+ t t++t++++ t+ +++tt++   +  a   P d+v +++a
  CCE31386.1 326 TNNGWINSTAFFTGDEQKVLSSTSTTTSSSASSTAFTsTTATSVSA-TSATASTTAAVDDAPPAWAQPEDSVPSSNA 401
                 4567888888888888888888888888887777655133333333.222333333333344444556666666665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2
       Mucin  98 taeaPttttt 107
                 +a+aP++ +t
  CCE31386.1 693 SAQAPNSHRT 702
                 2222222222 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.083   2.1e+02       2      18 ..       7      23 ..       6      26 .. 0.88
   2 ?   -2.6   0.4       2.4   6.2e+03      18      29 ..      69      79 ..      69      82 .. 0.72
   3 ?    7.3   0.0    0.0019       4.9       7      28 ..     108     129 ..     106     139 .. 0.72
   4 ?   -1.7   0.2       1.2   3.2e+03      17      31 ..     176     191 ..     173     202 .. 0.69
   5 ?   -1.0   0.0      0.74   1.9e+03       4      25 ..     295     317 ..     294     331 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.083
     Kelch_5  2 PppRaghcavtvsekiY 18
                P+++ ++c+v++++ +Y
  CCE31386.1  7 PSSLDNSCTVIYNNTLY 23
                999**********9999 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.4
     Kelch_5 18 YvyGGkvgrdgs 29
                +v+GG +g +++
  CCE31386.1 69 FVIGGQSG-SDD 79
                799**998.333 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0019
     Kelch_5   7 ghcavtv..sekiYvyGGkvgrdg 28 
                  h++++   s+ i+v+GG +  dg
  CCE31386.1 108 WHSSAYIeaSDTILVFGGNQ--DG 129
                 6777755338********98..44 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.2
     Kelch_5  17 iYvyGGkvg.rdgsvs 31 
                 +++ GG +g ++ +v+
  CCE31386.1 176 LIMVGGGTGaENTKVF 191
                 6789999999666554 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.74
     Kelch_5   4 pRaghcavtv.sekiYvyGGkvg 25 
                 +R++ +++++ ++ + + GG  g
  CCE31386.1 295 ARSNPAIAKApNGMVVLSGGNAG 317
                 57777888885599999**9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4986.33
//
Query:       CCE31387.1  [L=622]
Description: related to mRNA export factor MEX67 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-17   61.7   0.0      1e-16   60.3   0.0    1.8  2  TAP_C     TAP C-terminal domain
    6.1e-05   23.6   0.0    0.00092   19.8   0.0    2.5  1  NTF2      Nuclear transport factor 2 (NTF2) domain
    0.00047   19.9   0.6     0.0038   17.0   0.1    2.6  2  RRM_9     RNA recognition motif
     0.0061   16.9   0.0       0.19   12.2   0.0    2.5  2  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.21   11.4   0.0        0.6    9.9   0.0    1.8  1  DUF2733   Protein of unknown function (DUF2733)


Domain annotation for each model (and alignments):
>> TAP_C  TAP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.9     1e+04      29      37 ..     207     215 ..     207     217 .. 0.81
   2 !   60.3   0.0   2.9e-20     1e-16       2      49 .]     572     617 ..     571     617 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.9
                 HHHHHHHHH CS
       TAP_C  29 erAlqvFee 37 
                 erAl++F+ 
  CCE31387.1 207 ERALKTFKG 215
                 69*****85 PP

  == domain 2  score: 60.3 bits;  conditional E-value: 2.9e-20
                 HHHHHHHHH-B-HHHHHHHHSSTTT-HHHHHHHHHHHG..GGS-GGGB CS
       TAP_C   2 mvqafstqtgMnlewsqkcLeqnnWdyerAlqvFeelkakgkIPpeAF 49 
                 mv+++++qtgM +++s+ cL+q +Wd+++Al vF e k  + +PpeAF
  CCE31387.1 572 MVAELCRQTGMVPQYSELCLSQVGWDFDKALLVFGEKK--SLLPPEAF 617
                 **************************************..*******9 PP

>> NTF2  Nuclear transport factor 2 (NTF2) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.6e-07   0.00092       2     116 ..     354     523 ..     353     527 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.6e-07
                 HHHHHHHHHHHHHHHGGGGGG.GGEEEEEEEEEETTE....................................EEEESHHHHHHHHHHSSCSC.....E CS
        NTF2   2 akafvqqYYaaldagdregll.alyaadaslltpegs....................................spvkgreaIteffrslpftr.....i 58 
                 +++f+ +++aa+d+ dr+gl+ +ly +++s  +   +                                    +  +g++ I+e  + lp t+      
  CCE31387.1 354 GERFLVEFFAAYDS-DRQGLAaRLY-DNDSQFSLAIDtksvrdvgaptpmpwaayinhsrnlvkirnslgriqRLYTGANTIQEVWKGLPPTKhpnikD 450
                 78899999******.9999862566.666666655555799999999*************************999999999999999999999888644 PP

                 EEEEEEEEEEE.........TSEGGGCEEEEEEEEEEEETTSCCE....EEEEEEEEEEEET..TTEEEEEEE CS
        NTF2  59 elkittvdaqp.........deaslstgvlvmvtGelkvddfkkr....rkfsqtfilapqs..nkgyfvlnD 116
                 e ++   d++p         ++++  +g++++v Ge+++ d++ +    r+fs++f+l p +  +++  v++D
  CCE31387.1 451 EMTKFIMDCHPlpgladptgQSPTDVDGLILSVHGEFEEFDQATAavgkRSFSRVFVLGPGQpgQSAIRVVSD 523
                 77777789999999999999889999****************987999************9977777777776 PP

>> RRM_9  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.1e-06    0.0038       5      66 ..      74     145 ..      73     149 .. 0.64
   2 ?   -2.0   0.1      0.96   3.4e+03      33      57 ..     557     582 ..     553     583 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-06
       RRM_9   5 irgwqnaseqdLvsFisRkt.rvalqnasve.......ggvlvgyV...ktkkdaeeLlkwnGvrFAGnnLki 66 
                 i+++ ++   dL++F++Rk+  ++++  s         + v+  yV   ++++d++e+ k+n ++FAG++L+i
  CCE31387.1  74 IQNHDGG-LGDLLAFLERKAtAFKISTDSQArpvmvkkSHVVGDYVfvgASQEDVDEIIKLNTFNFAGSQLEI 145
                 6666655.57999999999623444332222122333333333345445689*******************99 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.96
       RRM_9  33 ve.ggvlvgyVktkkdaeeLlkwnGv 57 
                 v+  g   + V++++ + eL++  G+
  CCE31387.1 557 VQlQGQPNANVQQQAMVAELCRQTGM 582
                 44455556778888888888877775 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   5.4e-05      0.19       4      39 ..     235     273 ..     233     278 .. 0.76
   2 !   11.2   0.0   0.00011       0.4       3      36 ..     260     296 ..     258     301 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.4e-05
                 -EEE--SS---E-S-HH....H-TT--EEE-.-S-----G CS
       LRR_4   4 evLdLsnNqltdiplle....klpnLkeLdLsgNnlitdl 39 
                 e+++L+ N + d+   e     +p+Lk Ld+sgN +i + 
  CCE31387.1 235 ESISLAANSIDDVAQVEsvatTFPDLKNLDMSGN-QIANM 273
                 6678886799988884445646************.88665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00011
                 --EEE--SS---E-S-HH...H.-TT--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNqltdiplle...k.lpnLkeLdLsgNnli 36 
                 L++Ld s+Nq+   + +    + ++ L++++++gN +i
  CCE31387.1 260 LKNLDMSGNQIANMQAFDkwkGrFKYLETIYMTGN-PI 296
                 999**********9998877766999******999.55 PP

>> DUF2733  Protein of unknown function (DUF2733)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00017       0.6      15      32 .]     473     490 ..     470     490 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00017
     DUF2733  15 vkDVdGepINvveDfEef 32 
                  +DVdG ++ v  +fEef
  CCE31387.1 473 PTDVDGLILSVHGEFEEF 490
                 47***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4787.70
//
Query:       CCE31388.1  [L=1089]
Description: related to RNA helicase MPH1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-22   80.0   0.0    4.3e-22   78.9   0.0    1.5  1  ResIII      Type III restriction enzyme, res subunit
    1.8e-21   76.5   0.1    4.4e-21   75.3   0.1    1.6  1  Helicase_C  Helicase conserved C-terminal domain
    1.3e-17   64.1   0.0    1.3e-16   60.8   0.0    2.2  2  DEAD        DEAD/DEAH box helicase
    0.00034   20.9   0.0     0.0012   19.1   0.0    1.9  1  AAA_22      AAA domain


Domain annotation for each model (and alignments):
>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   9.6e-26   4.3e-22       4     169 ..     163     320 ..     148     322 .. 0.87

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 9.6e-26
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekds 101
                 lr+yQ ++++n l        ++ l++++TG GKT++aa ++ +++++ k  k +f++p+k l+ q  ++  ++   +++  ++ ++gd + a + ++ 
  CCE31388.1 163 LRDYQFSIVKNSL-------FNNTLVALPTGLGKTFIAATVMLNFYRWTKSAKLVFVAPTKPLVAQQVDACYNIVGIPRS-DTTLLTGDIQPAlRVEEW 253
                 4555555555554.......56899**********************************************999999976.778888888888777899 PP

                 ..-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---....SEEEEEESS- CS
      ResIII 102 tnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekfke....avllglTATp 169
                 ++k++l++t q+l +d+      +  ++++++ +i++DEaHr+ ++ ++ ++++ +++      +l+lTATp
  CCE31388.1 254 KEKRVLFMTPQTLLNDL-----SHGYADPKSIALIVVDEAHRAVGEYAYAKVAKFIRRfsnsIRILALTATP 320
                 *****************.....88888999999************88999996666444445999******9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.1   9.9e-25   4.4e-21      10     110 ..     518     630 ..     506     631 .. 0.85

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 9.9e-25
                 H..HHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTT........STHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C  10 l..kleeeggkilifvntidrlek.vklllekk.gikvavlhge........lpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprn 96 
                 +  + e +  ++++f++++d++e+ v+ l++++  +k+ v+ g+        ++q ++++++++f+kge+++L+at+++e+G+di +v+l++ +d   +
  CCE31388.1 518 FidQGEGSATRVIVFSEYRDSAEDiVRQLNKHQpLLKASVFVGQaagkrgegMKQAQQIQTIDRFKKGEFNILVATSIGEEGLDIGQVDLIVCYDSSAS 616
                 24556778899*********99988788855557677777777777778888*********************************************** PP

                 HHHHHHHHTTSSST CS
  Helicase_C  97 vtsyiqriGRtgRa 110
                 + ++ qr+GRtgR 
  CCE31388.1 617 PIRMLQRMGRTGRK 630
                 *************6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   2.9e-20   1.3e-16       4     175 ..     167     326 ..     164     327 .. 0.87
   2 ?    0.4   0.0      0.11   4.7e+02      35     104 ..     514     593 ..     502     609 .. 0.66

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 2.9e-20
                 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivv 102
                 Q +++++ l  ++ lva +TG GKT +++  +l ++y+   ++  k ++v+Pt+ L+ q+++ + ++    +  + l++g+ +    +++  ++ ++++
  CCE31388.1 167 QFSIVKNSL-FNNTLVALPTGLGKTFIAATVML-NFYR--WTKSAKLVFVAPTKPLVAQQVDACYNIVGIPRSDTTLLTGDIQPALRVEEW-KEKRVLF 260
                 555556666.3599*******************.6665..78888***********************97666788889999999999999.99***** PP

                 EEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 103 gtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 +tp+ l++ ls g+ + +++ ++V+DEa+r   +    ++ + ++++       +++ ++++l+AT+ ++v++
  CCE31388.1 261 MTPQTLLNDLSHGYADPKSIALIVVDEAHRAVGEYAYAKVAKFIRRF-------SNSIRILALTATPGSKVET 326
                 **********************************8888888888888.......34567********988876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.11
                 HHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET........TSSHHHHHHHHH...TT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxx...xx.xxxxxxx RF
        DEAD  35 vlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig........gvaardqlskld...ng.vdivvgt 104
                 vl++++++ + +++++++ +  r  ae+++++l+k    ++  +++++g        g ++ +q++++d   +g  +i+v+t
  CCE31388.1 514 VLNHFIDQGEGSATRVIVFSEYRDSAEDIVRQLNKHQPLLK--ASVFVGqaagkrgeGMKQAQQIQTIDrfkKGeFNILVAT 593
                 44455554455666999999999999999999988887644..333444333344445666666666643324467888777 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.6e-07    0.0012      13     120 ..     184     310 ..     178     323 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.6e-07
      AAA_22  13 esGtGKTtllrrlleqldeeakaee.............erpevv.fvtlpsstsskdllrellralglelkaerlsseell.ealeqalrarav....i 92 
                 ++G GKT+ +++++ ++ ++ k ++             + + ++  v +p s + + l  ++  al +e  + +++   +  ++l + l++ ++    i
  CCE31388.1 184 PTGLGKTFIAATVMLNFYRWTKSAKlvfvaptkplvaqQVDACYnIVGIPRS-DTTLLTGDIQPALRVEEWK-EKRVLFMTpQTLLNDLSHGYAdpksI 280
                 79***************99999888888887666555322222223333333.3566677777777777776.7777777777776666666667**** PP

      AAA_22  93 elliiDEaqhlrs....eealeeLrsllnlsr 120
                 +l+++DEa++       +++ +++r+++n  +
  CCE31388.1 281 ALIVVDEAHRAVGeyayAKVAKFIRRFSN--S 310
                 **********5434678999999999999..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1089 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 7585.29
//
Query:       CCE31389.1  [L=201]
Description: uncharacterized protein CPUR_05242 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   32.4   0.3    1.7e-07   31.6   0.3    1.4  1  DUF1772   Domain of unknown function (DUF1772)
  ------ inclusion threshold ------
      0.091   12.7   0.6       0.88    9.6   0.1    2.3  2  HTH_1     Bacterial regulatory helix-turn-helix protein, lysR


Domain annotation for each model (and alignments):
>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.3   1.9e-11   1.7e-07       1     136 [.      25     186 ..      25     187 .. 0.71

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.9e-11
     DUF1772   1 GlilafslfvvPallslpasssl...llkqwrrlfkrg.kavfpplallsalafayla...araasrgarllylaaaallllsivpyTllvmvP.tN.. 89 
                 G+++++s ++ P+ll+lp+s+s+   ++++       + +   p+lal+s++++ +l     + ++ + + l++++a+++l    ++  l+ +P +   
  CCE31389.1  25 GVSYTVSSLTLPSLLDLPSSTSAsqaIASL-------AeRLDTPLLALTSLSSVPLLLsfiLSPRRVRHPYLLFTSALAVL--STLVPRLLPQPrLRhv 114
                 899***************999653333222.......32333666666666666644457633444444444435444433..4556688888845554 PP

     DUF1772  90 nkLaal...........................k.eedakekedeaevrellerWgrlnlvRavlalaaavlgll 136
                 +   a+                             +e  +e+++ ++vr+ +e  +r +l+Ra la+++++++++
  CCE31389.1 115 S---AAaqkarkpssprvrmeasyevleevpsqAiSEGDDEEVNGEDVRAQVEALSRGHLARAGLAALGFCMAVV 186
                 2...22345789*****************9999456667788899**************************9986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   9.8e-05      0.88      26      48 ..      43      65 ..      39      72 .. 0.87
   2 ?    0.7   0.1     0.059   5.3e+02      13      24 ..     111     122 ..     110     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 9.8e-05
                -HHHHHHHHHHHHHHHTS-SEEE CS
       HTH_1 26 sqpavsrqikrLEeelgvpLfeR 48
                s  ++s++i++L e+l++pL+  
  CCE31389.1 43 SSTSASQAIASLAERLDTPLLAL 65
                5679****************975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.059
                 HSSHHHHHHHHT CS
       HTH_1  13 egsftrAAeeLg 24 
                  +++++AA++ +
  CCE31389.1 111 LRHVSAAAQKAR 122
                 6899****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.97
# Mc/sec: 624.59
//
Query:       CCE31390.1  [L=1874]
Description: uncharacterized protein CPUR_05243 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-45  153.7   1.5    2.2e-11   44.2   0.0    8.0  8  Ank_2     Ankyrin repeats (3 copies)
      7e-33  112.6   3.2    4.3e-06   27.2   0.0   10.7 13  Ank_4     Ankyrin repeats (many copies)
    2.8e-30  101.0   0.5    0.00087   19.6   0.0   11.7 12  Ank_3     Ankyrin repeat
    4.1e-29  100.3   3.3    0.00027   21.2   0.0   10.2 10  Ank_5     Ankyrin repeats (many copies)
    3.4e-24   84.2   8.3    0.00057   20.2   0.0   10.5 11  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0     6e-15   2.2e-11      11      77 ..     515     591 ..     505     595 .. 0.87
   2 !   13.4   0.0   2.4e-05     0.087      55      78 ..     719     742 ..     701     745 .. 0.89
   3 !   23.2   0.2   2.1e-08   7.5e-05      11      77 ..     779     867 ..     767     874 .. 0.78
   4 !   12.6   0.0   4.5e-05      0.16      51      81 ..     902     932 ..     879     934 .. 0.83
   5 ?    0.0   0.0      0.37   1.3e+03       1      23 [.    1115    1138 ..    1094    1187 .. 0.51
   6 !   32.0   0.0   3.8e-11   1.3e-07      25      82 ..    1463    1530 ..    1433    1531 .. 0.74
   7 ?   -3.3   0.0       3.9   1.4e+04      24      34 ..    1575    1586 ..    1548    1589 .. 0.64
   8 !   16.5   0.0   2.7e-06    0.0095      11      60 ..    1623    1685 ..    1614    1693 .. 0.73

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 6e-15
       Ank_2  11 elvklLl.egadpn..k.ngktaLhyAakngnleivklLleh.....ad.ndgrtpLhyAarsghleivklLlekga 77 
                 e++ +L  egadpn  + +g+t+Lh+A++  + eivk L++h     a+  dgr ++h+Aa  g+ eiv+ L+ek +
  CCE31390.1 515 EVLSWLSqEGADPNkrDyTGRTPLHLAVMTSSPEIVKCLVDHgsrltARlADGRMAIHLAAARGSDEIVRTLMEKSI 591
                 68899988******7548***********************99886544899*********99**********9865 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.4e-05
       Ank_2  55 tpLhyAarsghleivklLlekgad 78 
                 +pLh+A+ +gh+ +vklL+++ga+
  CCE31390.1 719 SPLHMAIVEGHESTVKLLCDYGAN 742
                 79*****************99986 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 2.1e-08
       Ank_2  11 elvklLl.egadpn..k.ngktaLhyAakngnleivklLleh..................adndgrtpLhyAarsghleivklLlekga 77 
                 ++ +lLl  ga  +  + +g taL   +++g++ iv  Ll+h                   + d  +pL +A+++g++++v  Ll+ ga
  CCE31390.1 779 SMARLLLkLGATSShaDaQGCTALCRYVEHGDTAIVDELLNHdktgirsainhimltgyrWNPDTVSPLNAAVQHGNPDLVLKLLNAGA 867
                 6889999644332234369**********************8888888887777766655558899*******************7775 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 4.5e-05
       Ank_2  51 ndgrtpLhyAarsghleivklLlekgadinl 81 
                 ++ ++pL++A+rsg++e++  L+++gad+n+
  CCE31390.1 902 RSYESPLINAIRSGNTEVAMHLVQHGADVNA 932
                 55579************************96 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 0.37
       Ank_2    1 LhlAakngnlelvklL.legadpn 23  
                  L+ Aa  gnl+ ++ L l++   n
  CCE31390.1 1115 LMEAAWAGNLNHIRDLtLQSWGTN 1138
                  455555555544444413221111 PP

  == domain 6  score: 32.0 bits;  conditional E-value: 3.8e-11
       Ank_2   25 ngktaLhyAakn...gnleivklLleh....ad...ndgrtpLhyAarsghleivklLlekgadinlk 82  
                  ++  ++h+A+ +    + e++++L+++    ++   +dg+tpL++A+r g++e++k+L++ gad  ++
  CCE31390.1 1463 DNDMVIHCAVLGmssESGELLEYLVAKapdcLEkrsSDGETPLMIACRLGRTELAKILVDAGADQSIR 1530
                  56788999988633222288*****9776773355699*********************99**98776 PP

  == domain 7  score: -3.3 bits;  conditional E-value: 3.9
       Ank_2   24 kngktaLh.yAa 34  
                  +n  t+Lh + +
  CCE31390.1 1575 ENATTPLHtWIC 1586
                  266788884444 PP

  == domain 8  score: 16.5 bits;  conditional E-value: 2.7e-06
       Ank_2   11 elvklLl...egadpn..k.ngktaLhyAakngnleivklLleh......ad.ndgrtpLhyA 60  
                  e++kl+l    g +++  +  g+t Lh+A+k++ l ivk L++h       +   grtp  +A
  CCE31390.1 1623 ETLKLILsysRGQELDllNgAGETCLHTAVKQDMLSIVKVLVDHnpqqvyREnAVGRTPAELA 1685
                  45566667666666666547899********999999*****988866532245599997766 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.2e-09   4.3e-06      14      55 .]     513     554 ..     501     554 .. 0.81
   2 !    7.7   0.0    0.0016       5.6      16      52 ..     549     584 ..     548     587 .. 0.87
   3 ?    3.3   0.0     0.037   1.3e+02       4      26 ..     570     592 ..     567     595 .. 0.85
   4 !   12.3   0.0   5.6e-05       0.2       3      39 ..     719     762 ..     718     764 .. 0.88
   5 !    6.0   0.0    0.0052        19       8      54 ..     772     817 ..     765     818 .. 0.80
   6 !    7.6   0.0    0.0016       5.8       3      55 .]     800     863 ..     800     863 .. 0.79
   7 !   13.8   0.0   1.8e-05     0.066       3      40 ..     906     951 ..     904     955 .. 0.87
   8 ?   -2.9   0.0       3.3   1.2e+04       2      22 ..    1154    1174 ..    1153    1185 .. 0.74
   9 ?   -3.6   0.0         5   1.8e+04       7      21 ..    1330    1344 ..    1329    1347 .. 0.79
  10 ?    1.4   0.0      0.14   5.1e+02      34      55 .]    1398    1419 ..    1382    1419 .. 0.81
  11 !   15.9   0.0   4.2e-06     0.015       5      54 ..    1468    1520 ..    1466    1521 .. 0.87
  12 !   10.2   0.0   0.00025      0.89       3      47 ..    1503    1546 ..    1502    1549 .. 0.87
  13 !   14.8   0.0   9.3e-06     0.033      14      54 ..    1622    1663 ..    1616    1664 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.2e-09
       Ank_4  14 lelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++ v ++l++ gad+n++ +  G+t+lh A++++++ei+k L+
  CCE31390.1 513 IDEVLSWLSQeGADPNKR-DYTGRTPLHLAVMTSSPEIVKCLV 554
                 55555555444*******.*********************995 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0016
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAakrgnveilk 52 
                 +v+ L+++g  + a+  ++G+ a+h Aa rg+ ei++
  CCE31390.1 549 IVKCLVDHGSRLTAR-LADGRMAIHLAAARGSDEIVR 584
                 688899*********.99*************866666 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.037
       Ank_4   4 aLhyaaisgrlelvrlLlekgad 26 
                 a+h aa+ g  e+vr L ek ++
  CCE31390.1 570 AIHLAAARGSDEIVRTLMEKSIE 592
                 69999999999999999998775 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 5.6e-05
       Ank_4   3 taLhyaaisgrlelvrlLlekgad.......inaqdnrsGetal 39 
                 ++Lh+a+ +g++ +v+lL ++ga+       +n+ d ++++ta 
  CCE31390.1 719 SPLHMAIVEGHESTVKLLCDYGANsilpvkfPNKHDWEDDNTAA 762
                 68*********************998888888888888888875 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0052
       Ank_4   8 aaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 + ++  + ++rlLl  ga   +  +++G tal + + +g+  i+  L
  CCE31390.1 772 LPEEKAISMARLLLKLGATSSHA-DAQGCTALCRYVEHGDTAIVDEL 817
                 555677899*****999876775.999*************9998766 PP

  == domain 6  score: 7.6 bits;  conditional E-value: 0.0016
       Ank_4   3 taLhyaaisgrlelvrlLlekgad............inaqdnrsGetalhiAakrgnveilklLl 55 
                 taL + +++g++ +v+ Ll++++              +++ n +  ++l  A+++gn++ +  Ll
  CCE31390.1 800 TALCRYVEHGDTAIVDELLNHDKTgirsainhimltGYRW-NPDTVSPLNAAVQHGNPDLVLKLL 863
                 689999999**********885556669966766666666.555678************997775 PP

  == domain 7  score: 13.8 bits;  conditional E-value: 1.8e-05
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaq........dnrsGetalh 40 
                 ++L +a+ sg++e+++ L+++gad+na         +++ G+ a++
  CCE31390.1 906 SPLINAIRSGNTEVAMHLVQHGADVNALtqetkrilKDGWGWRAFI 951
                 7999***********************9887777777788888887 PP

  == domain 8  score: -2.9 bits;  conditional E-value: 3.3
       Ank_4    2 ltaLhyaaisgrlelvrlLle 22  
                  ++++  a+  g++ ++r +le
  CCE31390.1 1154 NSPFSVAFLRGHFAVARAILE 1174
                  566777888888888888876 PP

  == domain 9  score: -3.6 bits;  conditional E-value: 5
       Ank_4    7 yaaisgrlelvrlLl 21  
                  +a ++g++el+ l++
  CCE31390.1 1330 WALEHGKTELLSLII 1344
                  688899999998887 PP

  == domain 10  score: 1.4 bits;  conditional E-value: 0.14
       Ank_4   34 sGetalhiAakrgnveilklLl 55  
                     ++l +Aa++g+v  ++++l
  CCE31390.1 1398 MKISPLLHAALGGSVGGVEFFL 1419
                  4568****************97 PP

  == domain 11  score: 15.9 bits;  conditional E-value: 4.2e-06
       Ank_4    5 Lhyaai...sgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54  
                  +h a+    s+  el+++L++k +d+ +  +++Get+l iA++ g+ e +k L
  CCE31390.1 1468 IHCAVLgmsSESGELLEYLVAKAPDCLEKRSSDGETPLMIACRLGRTELAKIL 1520
                  666666766777799**********99998999***************99988 PP

  == domain 12  score: 10.2 bits;  conditional E-value: 0.00025
       Ank_4    3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgn 47  
                  t+L  a+  gr+el+++L++ gad   + n  Ge+ +h +++r +
  CCE31390.1 1503 TPLMIACRLGRTELAKILVDAGADQSIR-NVMGENIIHVCLSRLS 1546
                  7899********************7777.7779999999998865 PP

  == domain 13  score: 14.8 bits;  conditional E-value: 9.3e-06
       Ank_4   14 lelvrlLlek..gadinaqdnrsGetalhiAakrgnveilklL 54  
                  +e+++l+l++  g++++   n+ Get+lh A+k   ++i+k L
  CCE31390.1 1622 VETLKLILSYsrGQELDLL-NGAGETCLHTAVKQDMLSIVKVL 1663
                  799*****54449*****9.*************9988888888 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.2   4.2e+03      16      30 ..     515     528 ..     508     529 .. 0.81
   2 !   16.9   0.0   1.8e-06    0.0065       2      26 ..     534     557 ..     533     561 .. 0.93
   3 !    8.0   0.0    0.0014       5.2       1      26 [.     566     590 ..     566     594 .. 0.88
   4 !    8.4   0.0     0.001       3.6       3      28 ..     718     742 ..     717     743 .. 0.93
   5 ?    1.9   0.0      0.13   4.8e+02       2      25 ..     798     821 ..     797     826 .. 0.86
   6 ?    5.2   0.0     0.012        42       4      26 ..     845     866 ..     842     871 .. 0.86
   7 !   11.7   0.0   8.8e-05      0.32       2      31 .]     904     932 ..     903     932 .. 0.94
   8 ?    0.0   0.0      0.56     2e+03       2      23 ..    1153    1174 ..    1152    1179 .. 0.88
   9 ?   -2.2   0.0         3   1.1e+04       8      23 ..    1330    1345 ..    1330    1351 .. 0.83
  10 ?   -0.2   0.0      0.66   2.4e+03       4      23 ..    1401    1420 ..    1399    1423 .. 0.85
  11 !   19.6   0.0   2.4e-07   0.00087       1      28 [.    1500    1526 ..    1500    1529 .. 0.94
  12 !   10.3   0.0   0.00026      0.92       2      26 ..    1644    1668 ..    1643    1672 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.2
       Ank_3  16 eivkfLlenkgadvn 30 
                 e++ +L +  gad+n
  CCE31390.1 515 EVLSWLSQ-EGADPN 528
                 5899****.8****9 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.8e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkg 26 
                 G+tpLhlA++  ++eivk L++ +g
  CCE31390.1 534 GRTPLHLAVMTSSPEIVKCLVD-HG 557
                 9*********************.66 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0014
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkg 26 
                 +G+ ++hlAa  g+ eiv+ L e k 
  CCE31390.1 566 DGRMAIHLAAARGSDEIVRTLME-KS 590
                 6999*****************99.55 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.001
       Ank_3   3 etpLhlAarsgnleivkfLlenkgad 28 
                 ++pLh+A+  g+ + vk+L++ +ga+
  CCE31390.1 718 CSPLHMAIVEGHESTVKLLCD-YGAN 742
                 59***********99******.9997 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.13
       Ank_3   2 GetpLhlAarsgnleivkfLlenk 25 
                 G+t+L + +++g+++iv+ Ll++ 
  CCE31390.1 798 GCTALCRYVEHGDTAIVDELLNHD 821
                 789999999************965 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.012
       Ank_3   4 tpLhlAarsgnleivkfLlenkg 26 
                 +pL  A+ +gn+++v  Ll+  g
  CCE31390.1 845 SPLNAAVQHGNPDLVLKLLN-AG 866
                 8************9999998.56 PP

  == domain 7  score: 11.7 bits;  conditional E-value: 8.8e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 +e+pL  A+rsgn+e++  L++ +gadvna
  CCE31390.1 904 YESPLINAIRSGNTEVAMHLVQ-HGADVNA 932
                 589*******************.9****96 PP

  == domain 8  score: 0.0 bits;  conditional E-value: 0.56
       Ank_3    2 GetpLhlAarsgnleivkfLle 23  
                  +++p+ +A + g++++++++le
  CCE31390.1 1153 NNSPFSVAFLRGHFAVARAILE 1174
                  689999**************99 PP

  == domain 9  score: -2.2 bits;  conditional E-value: 3
       Ank_3    8 lAarsgnleivkfLle 23  
                  +A+++g++e++ ++++
  CCE31390.1 1330 WALEHGKTELLSLIIK 1345
                  7999*****9999998 PP

  == domain 10  score: -0.2 bits;  conditional E-value: 0.66
       Ank_3    4 tpLhlAarsgnleivkfLle 23  
                  +pL +Aa+ g++  v+f+l 
  CCE31390.1 1401 SPLLHAALGGSVGGVEFFLS 1420
                  8*********9977888875 PP

  == domain 11  score: 19.6 bits;  conditional E-value: 2.4e-07
       Ank_3    1 nGetpLhlAarsgnleivkfLlenkgad 28  
                  +GetpL++A+r g++e++k L++  gad
  CCE31390.1 1500 DGETPLMIACRLGRTELAKILVD-AGAD 1526
                  69*********************.8998 PP

  == domain 12  score: 10.3 bits;  conditional E-value: 0.00026
       Ank_3    2 GetpLhlAarsgnleivkfLlenkg 26  
                  Get Lh+A++++ l+ivk L++++ 
  CCE31390.1 1644 GETCLHTAVKQDMLSIVKVLVDHNP 1668
                  9*********************654 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.5e-08   0.00027       4      56 .]     523     574 ..     520     574 .. 0.95
   2 !    9.0   0.0   0.00051       1.8       1      36 [.     553     587 ..     553     600 .. 0.82
   3 ?    1.3   0.0      0.13   4.5e+02      14      40 ..     717     741 ..     705     743 .. 0.73
   4 ?   -0.3   0.0       0.4   1.4e+03      13      38 ..     797     820 ..     779     827 .. 0.82
   5 !   12.5   0.0   3.9e-05      0.14      11      41 ..     838     868 ..     835     872 .. 0.90
   6 !    7.8   0.0    0.0012       4.3      14      46 ..     904     934 ..     893     938 .. 0.84
   7 ?    4.4   0.0     0.014        49       5      36 ..    1141    1173 ..    1138    1186 .. 0.87
   8 ?   -0.0   0.0      0.34   1.2e+03      17      36 ..    1398    1419 ..    1388    1427 .. 0.80
   9 !   20.0   0.0   1.8e-07   0.00065      14      53 ..    1499    1538 ..    1492    1541 .. 0.88
  10 !   18.0   0.0   7.5e-07    0.0027       7      56 .]    1635    1685 ..    1629    1685 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 7.5e-08
       Ank_5   4 hgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +g ad+n +d  g tpLh+A+   ++++v+ L+++g+ l+++ ++G++a++lA
  CCE31390.1 523 EG-ADPNKRDYTGRTPLHLAVMTSSPEIVKCLVDHGSRLTARLADGRMAIHLA 574
                 56.9**********************************************998 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00051
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl 36 
                 L++hg++ + rl  g+  ++h+Aa +g+ ++vr L+
  CCE31390.1 553 LVDHGSRLTARLADGR-MAIHLAAARGSDEIVRTLM 587
                 7788877777777666.****************998 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.13
       Ank_5  14 gggntpLhvAakygaadvvrlLlarga 40 
                 ++  +pLh+A+  g+ + v+lL+++ga
  CCE31390.1 717 PC--SPLHMAIVEGHESTVKLLCDYGA 741
                 34..9******9999999999998776 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.4
       Ank_5  13 dgggntpLhvAakygaadvvrlLlar 38 
                 +g+  t+L+  +++g   +v +Ll++
  CCE31390.1 797 QGC--TALCRYVEHGDTAIVDELLNH 820
                 455..99***************9955 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 3.9e-05
       Ank_5  11 rldgggntpLhvAakygaadvvrlLlargad 41 
                 r++++ ++pL+ A+ +g++d+v++Ll+ ga 
  CCE31390.1 838 RWNPDTVSPLNAAVQHGNPDLVLKLLNAGAL 868
                 89************************77765 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0012
       Ank_5  14 gggntpLhvAakygaadvvrlLlargadlnltd 46 
                  +  +pL++A++ g+ +v+  L+ +gad n+ +
  CCE31390.1 904 YE--SPLINAIRSGNTEVAMHLVQHGADVNALT 934
                 33..9************************9876 PP

  == domain 7  score: 4.4 bits;  conditional E-value: 0.014
       Ank_5    5 g.padvnrldgggntpLhvAakygaadvvrlLl 36  
                  + p ++  +d+  n+p+ vA  +g++ v+r +l
  CCE31390.1 1141 QaPLQIVISDNLNNSPFSVAFLRGHFAVARAIL 1173
                  55778889999999****************999 PP

  == domain 8  score: -0.0 bits;  conditional E-value: 0.34
       Ank_5   17 n..tpLhvAakygaadvvrlLl 36  
                  +  +pL +Aa +g+   v+++l
  CCE31390.1 1398 MkiSPLLHAALGGSVGGVEFFL 1419
                  55589999*************9 PP

  == domain 9  score: 20.0 bits;  conditional E-value: 1.8e-07
       Ank_5   14 gggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53  
                   +g+tpL++A++ g+ +++++L++ gad  +++ +G++ +
  CCE31390.1 1499 SDGETPLMIACRLGRTELAKILVDAGADQSIRNVMGENII 1538
                  4678*****************************9998765 PP

  == domain 10  score: 18.0 bits;  conditional E-value: 7.5e-07
       Ank_5    7 advnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56  
                    ++ l+g g+t+Lh+A+k+  +++v++L+  +++     ++ G+t+ +lA
  CCE31390.1 1635 QELDLLNGAGETCLHTAVKQDMLSIVKVLVdHNPQQVYRENAVGRTPAELA 1685
                  567899************************888888888888889999987 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.47   1.7e+03      16      31 ..     515     531 ..     499     532 .. 0.74
   2 !   20.2   0.0   1.6e-07   0.00057       2      29 ..     534     562 ..     533     563 .. 0.90
   3 ?    3.5   0.0      0.03   1.1e+02       1      22 [.     566     587 ..     566     593 .. 0.86
   4 !   13.5   0.0   2.2e-05     0.077       3      27 ..     718     750 ..     718     755 .. 0.79
   5 ?    3.1   0.0     0.042   1.5e+02       2      23 ..     798     820 ..     797     830 .. 0.88
   6 ?   -0.6   0.2      0.59   2.1e+03       4      27 ..     845     871 ..     844     875 .. 0.72
   7 !    9.2   0.0   0.00049       1.8       4      31 ..     906     934 ..     905     935 .. 0.90
   8 ?   -1.2   0.0      0.95   3.4e+03       1      21 [.    1110    1130 ..    1110    1142 .. 0.80
   9 !   19.5   0.0   2.7e-07   0.00096       1      31 [.    1500    1531 ..    1500    1532 .. 0.90
  10 ?   -0.9   0.0      0.74   2.6e+03       4      21 ..    1579    1625 ..    1578    1641 .. 0.48
  11 !    6.0   0.0     0.005        18       2      27 ..    1644    1668 ..    1643    1671 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.47
                 HHHHHHH.TTTSTTCBT CS
         Ank  16 riiklLL.hGAnlnald 31 
                 +++++L   GA++n +d
  CCE31390.1 515 EVLSWLSqEGADPNKRD 531
                 4666655459****998 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.6e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlna 29 
                 G+TPLHlA++  +++i+k L+ hG+ l+a
  CCE31390.1 534 GRTPLHLAVMTSSPEIVKCLVdHGSRLTA 562
                 99********9**********99976776 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.03
                 TSBBHHHHHHHHTTHHHHHHHH CS
         Ank   1 dGnTPLHlAatngkkriiklLL 22 
                 dG+ + HlAa +g+ +i++ L 
  CCE31390.1 566 DGRMAIHLAAARGSDEIVRTLM 587
                 788899****99******9885 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 2.2e-05
                 BBHHHHHHHHTTHHHHHHHH.TTTS.......T CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAn.......l 27 
                 ++PLH+A+ +g+++ +klL  +GAn       +
  CCE31390.1 718 CSPLHMAIVEGHESTVKLLCdYGANsilpvkfP 750
                 68******9********99977**955555555 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.042
                 SBBHHHHHHHHTTHHHHHHHH.T CS
         Ank   2 GnTPLHlAatngkkriiklLL.h 23 
                 G+T+L +++  g++ i+ +LL h
  CCE31390.1 798 GCTALCRYVEHGDTAIVDELLnH 820
                 9********999999*****976 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 0.59
                 BHHHHHHHHTTHHHHHHHH.TT..TST CS
         Ank   4 TPLHlAatngkkriiklLL.hG..Anl 27 
                 +PL  A++ g+++ +  LL  G  A++
  CCE31390.1 845 SPLNAAVQHGNPDLVLKLLnAGalAEI 871
                 799999999998888558866855555 PP

  == domain 7  score: 9.2 bits;  conditional E-value: 0.00049
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 +PL  A++ g+++++  L+ hGA++nal+
  CCE31390.1 906 SPLINAIRSGNTEVAMHLVqHGADVNALT 934
                 577779999**********99******87 PP

  == domain 8  score: -1.2 bits;  conditional E-value: 0.95
                  TSBBHHHHHHHHTTHHHHHHH CS
         Ank    1 dGnTPLHlAatngkkriiklL 21  
                  dG+  L+ Aa+ g+++ i++L
  CCE31390.1 1110 DGYIELMEAAWAGNLNHIRDL 1130
                  677779********9999998 PP

  == domain 9  score: 19.5 bits;  conditional E-value: 2.7e-07
                  TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank    1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31  
                  dG TPL++A++ g ++ +k L+  GA+  +++
  CCE31390.1 1500 DGETPLMIACRLGRTELAKILVdAGADQSIRN 1531
                  8*********************66**977776 PP

  == domain 10  score: -0.9 bits;  conditional E-value: 0.74
                  BHHH.HHH.................HHTT.............HHHHHHH CS
         Ank    4 TPLH.lAa.................tngk.............kriiklL 21  
                  TPLH + +                 +                k++++ L
  CCE31390.1 1579 TPLHtWICqasglgsvgeaeggyrnH--YgsyhpeyqtygdlKDVVETL 1625
                  99997434444555555555554332..033555555555575555443 PP

  == domain 11  score: 6.0 bits;  conditional E-value: 0.005
                  SBBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank    2 GnTPLHlAatngkkriiklLL.hGAnl 27  
                  G T+LH A+  + ++i+k L+ h  n+
  CCE31390.1 1644 GETCLHTAVKQDMLSIVKVLVdH--NP 1668
                  89*******444466*****944..55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.00u 0.30s 00:00:01.30 Elapsed: 00:00:00.49
# Mc/sec: 11427.31
//
Query:       CCE31391.1  [L=275]
Description: uncharacterized protein CPUR_05244 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-44  151.3  13.2    3.4e-44  151.1  13.2    1.1  1  DUF1275   Protein of unknown function (DUF1275)
     0.0084   16.0   0.4       0.34   10.9   0.0    2.5  2  DUF1427   Protein of unknown function (DUF1427)
  ------ inclusion threshold ------
       0.21   10.6   0.0       0.34   10.0   0.0    1.2  1  DUF1749   Protein of unknown function (DUF1749)
        1.8    8.2  10.5        1.9    8.1   3.6    2.5  2  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF1275  Protein of unknown function (DUF1275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.1  13.2   7.6e-48   3.4e-44       2     190 ..      54     257 ..      53     259 .. 0.88

  Alignments for each domain:
  == domain 1  score: 151.1 bits;  conditional E-value: 7.6e-48
     DUF1275   2 llllafvaGllDavaflaaggvfvsaqTGNtvllglalaegna....kaalaalvsllaFvlGaalagllarrggrrrrlvllle....allllaaall 92 
                 l+ll+f++G++Da++f +++++f+s+qTGNtv+l lal+  ++       +  +++l++F+   +l+g++ +  g+r+r++l+l+     ++++aaa++
  CCE31391.1  54 LVLLTFCTGIQDATTF-PDYHCFASNQTGNTVFLCLALVLPRLdgdvFITANIGMALGLFLGAGWLTGQISHLIGPRKRWWLILCnliqSACVFAAAAI 151
                 79**************.9*******************7654444321333446799**************999999*********9***9999999988 PP

     DUF1275  93 vpagsvsp.........lalallafamGlqnalfsr.lsgaeitttvlTgnltdlgidlarll.kkrklarnrrlaiilafllGavvGallvks...aa 177
                  +  +            ++++llafa+G q++  sr +s +ei+t+++T++++dl+id + ++ ++r  +r rr+a+++++++G +vGa++++     +
  CCE31391.1 152 -QYRQ--GivskgpealAVIGLLAFAAGSQVVQ-SRsFSITEISTAMATAAWVDLMIDEKLFAaTNR--PRSRRIAFLVSLVVGTLVGAAIYREagsPT 244
                 .4322..24579999999***************.777*********************888877666..589*************************** PP

     DUF1275 178 alwlaaallllva 190
                 al+++++ +llv+
  CCE31391.1 245 ALAVSGGGKLLVT 257
                 **********998 PP

>> DUF1427  Protein of unknown function (DUF1427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   7.6e-05      0.34      23      73 ..     158     211 ..     149     219 .. 0.70
   2 ?    2.6   0.2      0.03   1.3e+02       3      17 ..     222     237 ..     220     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.6e-05
     DUF1427  23 rsPaPPvvaLvGLlGiLvGeqvvPvak...rllageevatawakaeckehvlGe 73 
                  s  P ++a++GLl   +G qvv       + ++ + +++aw++  + e+++ +
  CCE31391.1 158 VSKGPEALAVIGLLAFAAGSQVVQSRSfsiTEISTAMATAAWVDLMIDEKLFAA 211
                 577899****************97543111333444555667777777777665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.03
     DUF1427   3 YllslgaGllvGv.iY 17 
                 +l+sl +G lvG  iY
  CCE31391.1 222 FLVSLVVGTLVGAaIY 237
                 89*********95255 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   7.6e-05      0.34      65     121 ..      10      68 ..       5      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 7.6e-05
     DUF1749  65 elqlsssyggwG.tgsLkrDaeeieklveYlkktksG.eekkekvvlmGHstGsqdvly 121
                 ++q +s + +   t+  +r +e  + + +Yl ++  G +++++++vl+   tG qd  +
  CCE31391.1  10 SVQSTSKFMAASnTACAQRPKETGSTVWKYLSQDLRGsTFTEAQLVLLTFCTGIQDATT 68 
                 5667777765541555666667777778******9888******************866 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.6   0.00042       1.9      12      54 ..     107     154 ..      99     160 .. 0.72
   2 ?    3.9   0.5    0.0082        37       7      56 ..     165     241 ..     159     260 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00042
     DUF4131  12 lllllllllllllrr.......rprrrvllllllllllallgfalrapqp 54 
                 ++l l+l +++l           pr+r++l+l+ l+  a++++a+  +++
  CCE31391.1 107 MALGLFLGAGWL--TgqishliGPRKRWWLILCNLIQSACVFAAAAIQYR 154
                 333333333333..23467888********************99988766 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0082
     DUF4131   7 lvllalllllllllllllrr...........................rprrrvllllllllllallgfalrapqpna 56 
                 l +++ll++++   ++++r+                            +r+r   +++l+ l+++  + +  ++ + 
  CCE31391.1 165 LAVIGLLAFAAGSQVVQSRSfsiteistamataawvdlmideklfaaTNRPRSRRIAFLVSLVVGTLVGAAIYREAG 241
                 55666666666666666666888888888888888888999999999556666666666666655555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2113.75
//
Query:       CCE31392.1  [L=1751]
Description: related to QDE3 protein (involved in gene silencing) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-21   77.1   0.0    2.9e-21   76.0   0.0    1.6  1  DEAD            DEAD/DEAH box helicase
    2.5e-17   63.2   0.0    1.8e-13   50.8   0.0    3.5  4  Helicase_C      Helicase conserved C-terminal domain
    3.6e-15   56.4   5.2    1.3e-14   54.7   5.2    2.1  1  RecQ_Zn_bind    RecQ zinc-binding
    2.3e-13   49.9   0.1    7.1e-13   48.3   0.0    1.9  2  RQC             RQC domain
    2.5e-07   30.9   0.0    6.3e-07   29.5   0.0    1.7  1  ResIII          Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.031   14.2   0.0        0.1   12.6   0.0    1.9  1  HRDC            HRDC domain
      0.085   12.1   0.0       0.23   10.7   0.0    1.6  1  SecA_DEAD       SecA DEAD-like domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   1.1e-24   2.9e-21       3     173 ..     862    1034 ..     860    1036 .. 0.79

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 1.1e-24
                  HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
        DEAD    3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.. 97  
                   Q eai+++l g+d +v ++TG GK+l++++p++ +     gkt+  +++v+P+ +L++++++++k ++ ++ +  +   + + +r+ +s+++++  
  CCE31392.1  862 NQLEAINATLAGKDAFVLMPTGGGKSLCYQLPAIVKT----GKTRGVTIVVSPLLSLMQDQVTHMKALGIQA-VAFNGECSAEYKRQVMSAFEERsp 953 
                  699*******************************555....99*************************9952.233333444444444455533234 PP

                  ...CSEEEEEHHHHHHHH...HCTSSH....CTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                  ...xxxxxxxxxxxxxxx...xxxxxx....xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   98 ...vdivvgtpgrlddll...stgkln....lsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173 
                     v++++ tp+++ +     +   ++      ++  lV+DEa++++++  +f+++++  l q++q   + +    +++l+AT++k+v
  CCE31392.1  954 ehfVELLYVTPEMVCRNAafnN--AMQtlyrRGKFARLVIDEAHCVSEWghDFRPDYKI-LGQVRQRFPNVP----FMALTATATKNV 1034
                  557************9776652..3333312455555************9999999975.****99999998....********9876 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.92   2.4e+03      54      93 ..     104     143 ..      76     152 .. 0.53
   2 ?   -3.2   0.0       4.2   1.1e+04      81     105 ..     277     304 ..     277     304 .. 0.84
   3 !    7.6   0.0    0.0018       4.6       8      64 ..     894     950 ..     886     963 .. 0.78
   4 !   50.8   0.0   6.9e-17   1.8e-13       6     110 ..    1076    1180 ..    1071    1181 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.92
                 HHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSS CS
  Helicase_C  54 ereeileqfnkgesdvLiatdvaerGidipkvnlVinfdl 93 
                 + e ++++  + +s+v   t  +e +idip+v  V + ++
  CCE31392.1 104 SSETVIDRRARPSSNVSTLTGWGEDSIDIPQVIEVADDNM 143
                 2223333333333333333444677*****9987776555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.2
                 TSTTESEEEESSSSSSH...HHHHHHHT CS
  Helicase_C  81 dipkvnlVinfdlprnv...tsyiqriG 105
                 ++p+v +V   ++p ++   +s+ +r+G
  CCE31392.1 277 NFPDVYHVLGTEPPASTpanRSATHRAG 304
                 79************88555689999987 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0018
                 HHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHT CS
  Helicase_C   8 ellkleeeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfnk 64 
                 +++k+ + +g ++++++  + +++ v+ +  k  gi++++++ge +++ +++++++f +
  CCE31392.1 894 AIVKTGKTRGVTIVVSPLLSLMQDqVTHM--KAlGIQAVAFNGECSAEYKRQVMSAFEE 950
                 444888999999*****999554335555..3359**********************74 PP

  == domain 4  score: 50.8 bits;  conditional E-value: 6.9e-17
                  HHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHH CS
  Helicase_C    6 llellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiq 102 
                  +  l++++  + + ++++ +++++e+v l l+++gi +  +h+    +++ ++ ++++kge++v++at + ++Gid p+v++V++ ++p++++ y q
  CCE31392.1 1076 IASLINTKYPDVTGIVYTISRKQAEEVALKLRTEGIAASHYHAGVDPQQKVRVQAEWQKGEIKVVVATIAFGMGIDKPDVRFVVHHGIPKSLEGYYQ 1172
                  4445555666666799999999998766667788*************************************************************** PP

                  HHTTSSST CS
  Helicase_C  103 riGRtgRa 110 
                    GR+gR 
  CCE31392.1 1173 ETGRAGRD 1180
                  *******6 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   5.2   5.1e-18   1.3e-14       2      66 .]    1193    1258 ..    1192    1258 .. 0.95

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 5.1e-18
  RecQ_Zn_bind    2 qDvsrlrrlieqseesekekeaelekleamlaycentteCrrkllleyFgeeaaeeeCgn.CDnCl 66  
                    +D++ l+++++ +e+++++ke+++ +l+++ +yc n+++Crr  +l+yFge+++ ++C++ CDnC+
    CCE31392.1 1193 ADIVMLKNFVDLGEGNAEQKERQMVMLNRVASYCDNKSDCRRTEVLRYFGEDFQPSQCQKrCDNCR 1258
                    79********999**************************************99999**555****5 PP

>> RQC  RQC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.6   9.3e+03      54      77 ..    1089    1112 ..    1089    1138 .. 0.81
   2 !   48.3   0.0   2.8e-16   7.1e-13       3     113 ..    1264    1377 ..    1262    1378 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.6
                  TTTTTS-HHHHHHHHHHHHHTTSE CS
         RQC   54 GigkdlskkewrrlirqLiaegyL 77  
                  Gi   +s+k+ ++++ +L +eg+ 
  CCE31392.1 1089 GIVYTISRKQAEEVALKLRTEGIA 1112
                  677789999999999999999986 PP

  == domain 2  score: 48.3 bits;  conditional E-value: 2.8e-16
                  -EEE-HHHHHHHHHHHHHTTS-SBHHHHHHHHHT---CCCCCTTGGGSTTTTTTTTS-HHHHHHHHHHHHHTTSE.EEE.......SSSBEEE-CCG CS
         RQC    3 etvDvteeaqkilscvyrtgqrfgaghivdvLrGsktkkirqlghdklstfGigkdlskkewrrlirqLiaegyL.eedve.....eygvlklteka 93  
                  e++D++++a +++++v++  +r++a++++d+L G +  +     h + ++fG  k+l+k+e+ r+i++L ae++  e +v      + +++++++ +
  CCE31392.1 1264 EQQDFSTYAIAAIQVVKAQ-ERLTANQCADILLGRRYPNGMP--HLSDEHFGTAKGLKKHEVVRVIDKLSAEKAFdELNVVgnygvAIQYVQMGPTS 1357
                  89***************99.9*************98886555..68889**************************76666699998888******** PP

                  HHHHTSSS--EEESHHHXSX CS
         RQC   94 revlkgeekvklreekkksk 113 
                  + +l+g++k++l+++++++k
  CCE31392.1 1358 HLFLNGRRKLMLTIPVDEKK 1377
                  **************998876 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   2.5e-10   6.3e-07       3     169 ..     858    1030 ..     856    1032 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.5e-10
                  EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.. CS
      ResIII    3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka.. 96  
                   +r+ Q eai+++l+       k +++ m+TG GK+l++ + +i +  k ++   ++++ p +sl++   +++k +  +a++++g+   + k++   
  CCE31392.1  858 GFRHNQLEAINATLA------GKDAFVLMPTGGGKSLCYqLPAIVKTGKTRG--VTIVVSPLLSLMQDQVTHMKALGIQAVAFNGECSAEYKRQVms 946 
                  589999******993......4678999***********9889988888877..8*************************99755555555555577 PP

                  ..........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.........TTTHHHHHT---SEEEEEESS- CS
      ResIII   97 ...kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak........kswreilekfkeavllglTATp 169 
                     +++ ++  ++l +t +++ ++   ++ +++ ++r++f  ++iDEaH +++         k   ++ + f++   ++lTAT 
  CCE31392.1  947 afeERSPEHFVELLYVTPEMVCRNAAFNNAMQTLYRRGKFARLVIDEAHCVSEWghdfrpdyKILGQVRQRFPNVPFMALTATA 1030
                  8889999999*************99888*********************99997666665444667778888888888888875 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     4e-05       0.1      21      67 ..    1520    1566 ..    1508    1567 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4e-05
                  S-HHHHS-HHHHHHHHHH---SHHHHHTSTTT-HHHHHHHHHHHHHH CS
        HRDC   21 vppyvvfpdktLleiAeklPttleeLlqiegvgkrklekygeeilea 67  
                  + ++ +f+++  +++A +  t+l+++++i+g+   k+ ++g+++l +
  CCE31392.1 1520 ELRRPLFTENDFRQMAIHWTTSLDAMSRITGINAEKVWEHGPRLLPV 1566
                  556678899999*******************************9976 PP

>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.9e-05      0.23      72     125 ..     855     908 ..     843     948 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.9e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD  72 rvlgmrhydvQliGglvlhegkiaemkTGEGKtlvatlpaylnaltgkgvhvvt 125
                 r+ g rh +   i +++  + + + m TG GK+l+  lpa+++  + +gv +v 
  CCE31392.1 855 RMKGFRHNQLEAINATLAGKDAFVLMPTGGGKSLCYQLPAIVKTGKTRGVTIVV 908
                 78888999999999999999999***************************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1021  (0.0569468); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.01u 0.29s 00:00:01.30 Elapsed: 00:00:00.45
# Mc/sec: 11568.26
//
Query:       CCE31393.1  [L=1064]
Description: uncharacterized protein CPUR_05246 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-161  539.6   0.1   1.3e-161  539.6   0.1    2.3  3  KAR9      Yeast cortical protein KAR9


Domain annotation for each model (and alignments):
>> KAR9  Yeast cortical protein KAR9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.8  12.1         1   1.8e+04     484     615 ..      74     127 ..      22     206 .. 0.50
   2 ?   -2.4   0.0     0.071   1.3e+03     398     441 ..     192     271 ..     182     287 .. 0.76
   3 !  539.6   0.1  7.2e-166  1.3e-161       2     683 .]     346    1036 ..     344    1036 .. 0.84

  Alignments for each domain:
  == domain 1  score: -10.8 bits;  conditional E-value: 1
        KAR9 484 tkrkskipkasskkslllstpsktatsesptpasrkesrispppknrPrwnastntsDlevGhnfkpltlttpsapapsrssrssstlppvsPlerkks 582
                 t +++++p+a   +  l +                                                                                
  CCE31393.1  74 TTDTTSAPTAAIPSVRLGT-----------------------------------------------------------------------H-------- 93 
                 1111222222222222222.......................................................................1........ PP

        KAR9 583 kspsP.taRsvsrvsarrasskptviaspns...rts 615
                    +P   Rs+s+++ r +ss    +a +++   r+s
  CCE31393.1  94 ---TPdLSRSTSNATLRSTSSGSVSSATTTPcinRSS 127
                 ...2222233333333333333333333333222222 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.071
        KAR9 398 grqlrdSvssil...................................teDspatlsaiktPgss.passvimepanknss 441
                 +++  +S+ssi+                                   + + p+  +a++tP+ + p+ + + e+ ++ s+
  CCE31393.1 192 EKHQANSISSIIsrrgrpwkgagaympaladsptiepiaaaespqlpEIRVPEPSVAMDTPECElPEPDHVNENDTEVSR 271
                 67777899999999999999999999998888888888888888888888888888889999887666666666554444 PP

  == domain 3  score: 539.6 bits;  conditional E-value: 7.2e-166
        KAR9    2 sndLsqltkilldiplyLeasiaainnaqaavraltgaaeqiqkWike....................GregldeldkaiekieslisvylkaiEev 78  
                   n+L+qlt++ l+++++L+++++ai++aq a++al++a  qi+ Wi +                    Gregld+++ a++++e li+ y+ aiEe 
  CCE31393.1  346 ANQLAQLTSLQLPDAESLSSKVSAIRTAQVATQALINASGQIRSWIAKaqevisgldseddvewaaagGREGLDDVENAMTRFENLINAYIGAIEEL 442 
                  79*********************************************************************************************** PP

        KAR9   79 qlredia...addlknivaqmeeisdlllevkkllivvKkqvelAmeyeELwnsvlgdlgeEiedliklileleekrlss.....pkkgldifeLet 167 
                  q+r di     +dlk+ va me+i+++++++++ l +v +qve+Ame+eELwn+vlgd++ E +d  +li+e+ee+r++      ++  +di +Le 
  CCE31393.1  443 QQRSDIThvpPEDLKQAVAHMESIVNEWAHIRAALTSVRSQVEIAMEWEELWNNVLGDIQGEMDDIGRLIFEMEERRHKGvmassAGADVDIGDLEM 539 
                  *********99*******************************************************************99888889999******** PP

        KAR9  168 iveemkin.tsttfsnkrlslptf..............nplDeklysdlleLeariqPLraSLdfLPmrlseFqsraeklfpsaceeledrrerLvk 249 
                  ive ++   ++ +++n r+slp++               ++D+   s+ll+L+ar+qPLraSLdfLPmrls F  raek fp+aceele+rr+ L +
  CCE31393.1  540 IVEDTPPPgARLQAANHRFSLPSMptglgtpgthghpgLSQDD---SSLLALFARMQPLRASLDFLPMRLSVFEARAEKTFPTACEELEMRRTGLDA 633 
                  *******9888899************************99999...9************************************************** PP

        KAR9  250 kykkLekdaealkkeliedrWnlvFrnlikeiqkmcdsversleklqeale...qlnnptalakriesdeakkkykvcaIervlsiIqKavkdrliv 343 
                  +ykkLekdae l+kel+edrW++vFr +++++qkm +sv rsl kl+ea+e    l+ p+++ k+ie++eakk+++++aIervlsiI ++vkdrl+v
  CCE31393.1  634 SYKKLEKDAESLRKELGEDRWVIVFRGAGRQAQKMHESVRRSLLKLSEAIEaeaSLQMPPTMMKKIENYEAKKTHYGPAIERVLSIIDRGVKDRLTV 730 
                  ****************************************************99999**************************************** PP

        KAR9  344 ngeiarllndLaskwdalkesiDlnldvesssvplsvekkrvkdvlleelsksk.grqlrdSvssilteDspatlsaiktPgsspassvimepankn 439 
                  ngei+rl++d++ +w+ lk +i                  r +d++++e+++ k ++qlrdSvss+l+ D+++ +s  +tPgssp+ssvim      
  CCE31393.1  731 NGEILRLHHDMQTRWESLKVQI------------------REMDAIVDEIEADKkSQQLRDSVSSMLSIDRSTIGSGQDTPGSSPPSSVIMASLGFD 809 
                  **********************..................********99866549***********************************998888 PP

        KAR9  440 sstklelssrrkssvdlgslaerviasklkreSklPqiastleqtkrk..skipkasskkslllstpsktatsesptpasrkesrispppk..nrPr 532 
                   +t+l   + r+++v  + + ++v     +r+S lP++++ +   +rk   +  ++ s   +   tp  +a +   t a+r  s          rP+
  CCE31393.1  810 PHTPLTRGKGRSPMV--NGTGNKVSYPPNRRHSSLPAPSAYS---NRKagFRLSTMAS---SNAATPAASASTNAKTSAARAGST-----LghHRPA 893 
                  888865445555555..77889999999**********9977...3331222222222...112234444444333334444442.....2458*** PP

        KAR9  533 wnastntsDlevGhn..fkpltlttpsapapsrssrssstlp.pvsPlerkksksp....sPtaRsvsrvsarrasskptviaspnsrtslldepky 622 
                  wn s+ntsDl +  +  ++ +t++ + + a++ s  s+s+lp  +   +r+ s s     sPt    sr+s r      ++++sp +        +y
  CCE31393.1  894 WNGSVNTSDLGMTSPnlYSRMTPSIQRSAASCLSPASASKLPtIRGGTSRAPSDSLviedSPTRGGHSRLSFR------ERVSSPAP-------GPY 977 
                  *********9875431133333333333444444444777776666666666666666666644445655555......45566666.......444 PP

        KAR9  623 skltlrkalertersrqsYagtslsrsssveseegkq....tkssrPgtslgssfdesrllsllk 683 
                  ++++  +       +++s  +   +r +s++   +++     ++ rP +sl s    +r++sll+
  CCE31393.1  978 NQQNVTR---PRLTTKLSMSALTAKRRVSMQPPGSDSvaeeCQAPRPASSLAST---NRRTSLLP 1036
                  4444444...222334444444444444444433333221134559*****999...99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1064 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.46
# Mc/sec: 7014.46
//
Query:       CCE31394.1  [L=541]
Description: uncharacterized protein CPUR_05247 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.5   0.0       0.56   10.4   0.0    2.0  2  CH        Calponin homology (CH) domain
       0.13   11.4   0.1       0.67    9.1   0.1    1.9  2  DRAT      Dinitrogenase reductase ADP-ribosyltransferase (DRA


Domain annotation for each model (and alignments):
>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.3e-05      0.56      25      80 ..     434     494 ..     424     505 .. 0.72
   2 ?   -3.0   0.0      0.91   8.1e+03       4      15 ..     516     527 ..     514     532 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.3e-05
                 SCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT.......HHHHHHHHHHHHHHHHHHTTCHT CS
          CH  25 edfeedlrDGvlLckLlnklapglvdkkklnks.......efkkleNinlaldvaekklgvpk 80 
                 + f + l++GvlL kL n+   ++ +     ++       +++  +Ni+++ ++ae  l+++ 
  CCE31394.1 434 TPFLQGLQNGVLLVKLHNAAVKKSRRRFGAIPTfhtdtqkPYRSADNIRYWAKAAE--LRFEV 494
                 77999***************55553322222225666668*************666..55554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.91
                 HHHHHHHHHHHH CS
          CH   4 kkellrWinshl 15 
                 + ++l+W++ + 
  CCE31394.1 516 ESAILKWCEHVR 527
                 56899***9865 PP

>> DRAT  Dinitrogenase reductase ADP-ribosyltransferase (DRAT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.047   4.2e+02      98     127 ..     360     389 ..     344     404 .. 0.69
   2 ?    9.1   0.1   7.4e-05      0.67      47     142 ..     404     494 ..     360     508 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.047
        DRAT  98 gAvlkgWvesRfGllptfHkevlkelesea 127
                   ++  Wv s f  l + Hk  l+e ++++
  CCE31394.1 360 IKIMTDWVASVFDFLEQEHKIELAERAERE 389
                 446777777777777777777776665544 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 7.4e-05
        DRAT  47 eaaevFqdymsvlFkleeaeeaeeaegekrrlkasYlrllrgWlfdsnsaegAvlkgWvesRfGllptfHkevlkeleseayaeYleekmkgrakt 142
                 e+ ++F + m+ + +l  +e +  +  e +++ + +l+ l++ ++    +++Av k   + RfG +ptfH+++ k ++s   ++Y ++ ++ r++ 
  CCE31394.1 404 ERERAFLSSMEPEAEL-LPEWTPLS--EASECPTPFLQGLQNGVLLVKLHNAAVKKS--RRRFGAIPTFHTDTQKPYRSADNIRYWAKAAELRFEV 494
                 5666666666666665.33332222..223466777777777777777788888775..78*************************9999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3948.64
//
Query:       CCE31395.1  [L=137]
Description: uncharacterized protein CPUR_05248 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.022   13.7   4.8      0.025   13.5   4.8    1.0  1  5_nucleotid  5' nucleotidase family
      0.037   13.9   2.1      0.045   13.7   2.1    1.1  1  DUF1917      Domain of unknown function (DUF1917)
       0.41   10.0   5.3       0.46    9.8   5.3    1.1  1  DUF4407      Domain of unknown function (DUF4407)
       0.82    8.1   3.4       0.85    8.1   3.4    1.1  1  FUSC         Fusaric acid resistance protein family
       0.85    8.0   5.0       0.89    8.0   5.0    1.0  1  Aldedh       Aldehyde dehydrogenase family
        6.9    7.0  12.4         11    6.4  12.2    1.3  1  OmpH         Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> 5_nucleotid  5' nucleotidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   4.8   8.5e-06     0.025     315     404 ..      27     116 ..      25     128 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.5e-06
                  HHHHHHCH-SEEEEE-TTHHHHHHHHHHTHHH.HHHHHHHHHHHHHHHHHHHHHHHT.TTHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-T CS
  5_nucleotid 315 ilkskkklgWrTalvvpELeeElevleekkek.eeleelekleelledelkklksseeeskekleeleedleelkkeirelreelkelfnk 404
                  i++ kk++  r a++v E e+El++l+++ +  +e ++ e  e++ +d lk+++   e+ +e  +++ e++++++++++e+++ + + +++
   CCE31395.1  27 IHELKKERDERAAAIVAEAEKELAALRQQAQDfQEERRREGSERRAQD-LKRVRDLIEKRTEIETKMLEVVRDAHSAMQEVENMILAGYEG 116
                  77899*************************664444444444444444.555544433333333444446666666666666666555555 PP

>> DUF1917  Domain of unknown function (DUF1917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.1   1.5e-05     0.045      84     165 ..      13      98 ..       2     103 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
     DUF1917  84 sekgpWiyianpa.edeapeeegsdlaklveegtelLqeleekkqelekenakkkk...kskaalkrelnkerkeleeeilelAre 165
                 +++ ++i  + p+  +e ++e+++++a++v+e+++ L++l+++ q  ++e +++ +    +     r+l ++r e+e+++le+ r+
  CCE31395.1  13 ESDPSFIALEAPKrIHELKKERDERAAAIVAEAEKELAALRQQAQDFQEERRREGSerrAQDLKRVRDLIEKRTEIETKMLEVVRD 98 
                 4455689999998678889999*************************999887766333344455678888899999999987665 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.3   0.00015      0.46     131     218 ..      23     109 ..       3     132 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00015
     DUF4407 131 ltaelaeleaqia.alqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalrae 218
                 + +++ el+++++ ++ a +++ae++l+alr++aq+  +  + +g +++a + ++ +   ++ +++++++ e+ ++  a +++++ ++ 
  CCE31395.1  23 APKRIHELKKERDeRAAAIVAEAEKELAALRQQAQDFQEERRREGSERRAQDLKRVRDLIEKRTEIETKMLEVVRD--AHSAMQEVENM 109
                 6788888888888344555688899999999999988777777777777777777777777777777666666666..55555555543 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.4   0.00028      0.85     282     343 ..      23      81 ..       5     129 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00028
        FUSC 282 lrarlralrraleadadtaalllarlaellaelaqllaslraleaaiaaarraerlarhrdh 343
                  ++r+ +l+++++   ++aa+++a++  +la+l+q  +++++ +++  ++rra+ l+r rd 
  CCE31395.1  23 APKRIHELKKERD---ERAAAIVAEAEKELAALRQQAQDFQEERRREGSERRAQDLKRVRDL 81 
                 4444544444444...6666666666666666666666666666666666666666666664 PP

>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.0    0.0003      0.89       7      94 ..      25     110 ..      18     127 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0003
                 SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHH CS
      Aldedh   7 etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeai 94 
                 ++i+ ++   +e  a + a  ++++ a  ++A++ +++ ++   e+Ra+ L++++dl+e+r e  +e+ +le+    ++a++eve++i
  CCE31395.1  25 KRIHELKKERDERAAAIVAEAEKELAALRQQAQDFQEERRREGSERRAQDLKRVRDLIEKRTE--IETKMLEVVRDAHSAMQEVENMI 110
                 45666677777778888888899999**********************************887..67788888888899988888776 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  12.2    0.0036        11      20     100 ..      30      84 ..      20     111 .. 0.42

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0036
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  20 aqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkink 100
                  +++ ++ ++++                           +e+e+el++++q+ q++q+++++e  +++++ lk++ d i+k
  CCE31395.1  30 LKKERDERAAAI--------------------------VAEAEKELAALRQQAQDFQEERRREGSERRAQDLKRVRDLIEK 84 
                 222222222222..........................3344444444444444422233344444444444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1822  (0.101623); expected 358.6 (0.02)
Passed bias filter:                      703  (0.0392102); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 1100.32
//
Query:       CCE31396.1  [L=533]
Description: probable chaperonin CCT4, cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.8e-151  504.1  17.0   4.3e-151  503.9  17.0    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.065   13.2   0.0        5.1    7.1   0.0    2.7  2  DUF3924     Protein of unknown function (DUF3924)
       0.11   11.9   0.0       0.17   11.3   0.0    1.2  1  HECT        HECT-domain (ubiquitin-transferase)


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.9  17.0  7.1e-155  4.3e-151       1     486 [.      36     529 ..      36     533 .] 0.97

  Alignments for each domain:
  == domain 1  score: 503.9 bits;  conditional E-value: 7.1e-155
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 +ad+++t+lGP+GmdKm+ +  g++++TnDG+t+lk++ + hP+ak+lv++a +qd e+GDGTt+vv+++g+Ll +a +l+++gvhp++i e++++a +
  CCE31396.1  36 VADAIRTSLGPRGMDKMIRSGKGETIITNDGHTMLKSMSVMHPTAKMLVNLAGAQDVEAGDGTTSVVVICGSLLGAADRLLSKGVHPSVISEAFQRASA 134
                 689************************************************************************************************ PP

                 HHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHH.HCHCCCS.EECSCCCEECCCCEECECTTSEEESEEEESS--SST.TS CS
  Cpn60_TCP1 100 kaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAv.klieene.keldlgrikvvkieggsledselveGlvldkgvlsp.dm 195
                 +a++ L e+  + +++  d+++Ll++a+tslssk++s+ ++ l+ ++v+Av k+i+ ++  ++dl +i++vk+ gg +edselv+Glvl ++vl++   
  CCE31396.1 135 AAVDVLHEM--SQPITLSDTSALLQAANTSLSSKIVSQYSNLLGPMAVNAVtKVIDVKTaDNVDLRNIRIVKKVGGTIEDSELVPGLVLHQQVLKNaGG 231
                 *********..66666679************************************99999*****************************9999988677 PP

                 SCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B.....-HHHHHHHHHCT-EEE-S--HHHHHHH CS
  Cpn60_TCP1 196 pkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgi.....ddlalhflakngilalrrvkkkdlerl 289
                 p ++e+a++ l++++L+++k++++ t++++d  +++k++k+e+ +l+++++ki+k+++nv+++qk+i     +dl+lhflak gila++ ++++++e +
  CCE31396.1 232 PVRMEKARIGLIQFQLSPPKPDMENTIQVNDYRQMDKIVKEERLYLLNMVKKIKKAKCNVLLIQKSIlrdavNDLSLHFLAKLGILAIKDIERDEVEFI 330
                 ******************************************************************999999*************************** PP

                 HHHHT--EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECE.SSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHH CS
  Cpn60_TCP1 290 akatGatavssledltpeelGtakkveeekigsekttiieev.ksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakkl 387
                 +k tG++++++++++t+++lG+a+ vee++ +  +++ +++  +sgk++++++rga+ ++l+e+er+++dAl+v++++++++ +++GGGa+e+e+a++l
  CCE31396.1 331 CKSTGCKPIADVDSFTEDKLGYAELVEEAETSGSRMVKVTGAkASGKTVSVVVRGANSMILEEAERSLHDALCVMRCLVKKKALIAGGGAAEIEIAAQL 429
                 **************************************99653799***************************************************** PP

                 HCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTTTCEEE.CCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEE CS
  Cpn60_TCP1 388 keyaksvsgeeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidvesgeiid.lveagvvDplkvkrqalksAteaastiLride 485
                 +++a+s++g e+++++afa+A+evip tLaeNaGl++i+v+++lr++h+ gek++g++++sg +   + +++v++pl v ++a+++A+e++++iLrid+
  CCE31396.1 430 SKQARSLTGTEAICWKAFADAMEVIPTTLAENAGLNSIKVVTDLRHRHEMGEKNAGVSIKSGGVNTnISKENVLQPLLVSTSAIELAAETVKMILRIDD 528
                 ***************************************************************76549999**************************** PP

                 E CS
  Cpn60_TCP1 486 i 486
                 i
  CCE31396.1 529 I 529
                 9 PP

>> DUF3924  Protein of unknown function (DUF3924)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00085       5.1       2      41 ..     181     220 ..     180     227 .. 0.87
   2 ?    3.0   0.0     0.017        99      24      46 ..     481     502 ..     472     506 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00085
     DUF3924   2 ntltielPketaekldllkqayekktGasisestlvqtli 41 
                 n++t  +   ta+ +dl      kk G +i +s lv  l+
  CCE31396.1 181 NAVTKVIDVKTADNVDLRNIRIVKKVGGTIEDSELVPGLV 220
                 6666667778**************************9887 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.017
     DUF3924  24 ekktGasisestlvqtliskefi 46 
                 ek +G si  s  v t iske +
  CCE31396.1 481 EKNAGVSIK-SGGVNTNISKENV 502
                 8999***95.888*******964 PP

>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.9e-05      0.17      71     139 ..     248     502 ..     212     507 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.9e-05
                 T......-.---TCHHHHH-HHHHHHHHHHH..HS-GGG...................GT-BSEEEE................................ CS
                 x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxx................................ RF
        HECT  71 g......eekitledleeidpelakslkellslesntee................vedlaLtFtipe................................ 115
                        e++i+++d +++d+ ++++  +ll++ ++ ++                v+dl+L F  +                                 
  CCE31396.1 248 SppkpdmENTIQVNDYRQMDKIVKEERLYLLNMVKKIKKakcnvlliqksilrdaVNDLSLHFLAKLgilaikdierdevefickstgckpiadvdsft 346
                 1555556679****************99******999999***********************988799999999999999999999999999999999 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HECT 116 ................................................................................................... 115
                                                                                                                    
  CCE31396.1 347 edklgyaelveeaetsgsrmvkvtgakasgktvsvvvrgansmileeaerslhdalcvmrclvkkkaliagggaaeieiaaqlskqarsltgteaicwk 445
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                 ................................ETTEE.EEEESSTTGGGSB--TTTH CS
                 ................................xxxxx.xxxxxxxxxxxxxxxxxxx RF
        HECT 116 ................................nagas.atieLipnGanipVtnenk 139
                                                 ++g++ a + ++++G n+++ +en+
  CCE31396.1 446 afadamevipttlaenaglnsikvvtdlrhrhEMGEKnAGVSIKSGGVNTNISKENV 502
                 999999999999999999999999999998854766635888999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3718.03
//
Query:       CCE31397.1  [L=529]
Description: probable 26S proteasome regulatory subunit YTA3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-40  137.2   0.0    7.5e-40  136.4   0.0    1.4  1  AAA           ATPase family associated with various cellular 
    2.1e-07   30.6   0.1    6.8e-07   29.0   0.0    1.9  2  AAA_lid_3     AAA+ lid domain
    0.00013   22.0   0.1    0.00079   19.4   0.0    2.3  3  AAA_5         AAA domain (dynein-related subfamily)
    0.00024   21.4   0.0     0.0072   16.6   0.0    2.4  2  AAA_22        AAA domain
    0.00043   20.4   0.0     0.0021   18.2   0.0    2.0  2  AAA_2         AAA domain (Cdc48 subfamily)
     0.0011   19.3   0.1      0.016   15.6   0.0    2.2  2  AAA_16        AAA ATPase domain
     0.0021   17.2   0.0     0.0037   16.5   0.0    1.3  1  DUF815        Protein of unknown function (DUF815)
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.023   14.4   0.0    1.4  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
      0.039   14.2   0.0      0.081   13.2   0.0    1.5  1  AAA_28        AAA domain
      0.047   13.2   0.0       0.12   11.8   0.0    1.7  1  AAA_7         P-loop containing dynein motor region
      0.067   13.3   0.0       0.12   12.5   0.0    1.4  1  AAA_33        AAA domain
      0.086   13.2   0.0        0.2   12.1   0.0    1.6  1  RNA_helicase  RNA helicase
        0.1   12.5   0.0        0.2   11.5   0.0    1.5  1  AAA_3         ATPase family associated with various cellular 
       0.15   12.1   0.0       0.33   11.0   0.0    1.6  1  AAA_14        AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4   0.0   5.9e-43   7.5e-40       2     131 ..     309     440 ..     308     441 .. 0.95

  Alignments for each domain:
  == domain 1  score: 136.4 bits;  conditional E-value: 5.9e-43
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvk 97 
                 llyGppGtGKTl+a+ava+ ++++f+++ gsel++kyvge+++ +relf+ a++k+  +i+f+DEida++++r     + ++e +r++ +L+t+ldg++
  CCE31397.1 309 LLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKK-ACIIFFDEIDAVGGARfddGAGGDNEVQRTMLELITQLDGFD 406
                 9*****************************************************98.9***************9965668899999************* PP

                 TSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  98 kkeskvivigatnrpdkldpallr.gRfdrkieie 131
                  + +++ v+ atnrp++ldpal+r gR+drkie++
  CCE31397.1 407 AR-GNIKVMFATNRPSTLDPALMRpGRIDRKIEFS 440
                 *7.66***************************997 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       9.3   1.2e+04      26      34 ..      26      34 ..      25      36 .. 0.85
   2 !   29.0   0.0   5.3e-10   6.8e-07       4      43 ..     466     505 ..     463     507 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 9.3
   AAA_lid_3 26 AallAlrrg 34
                A+++A++r+
  CCE31397.1 26 ASHRAVSRN 34
                999***998 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 5.3e-10
   AAA_lid_3   4 lkeLAerTeGySGADlaalcreAallAlrrgikeitmedf 43 
                 ++ + +++++ +GA+l ++c eA++ A+r  +k  t++df
  CCE31397.1 466 WELISRLCPNATGAELRSVCTEAGMFAIRARRKVATEKDF 505
                 566889****************************9****9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.1   2.7e+03      27      48 ..     216     237 ..     208     245 .. 0.81
   2 !   19.4   0.0   6.2e-07   0.00079       3      76 ..     309     375 ..     307     383 .. 0.78
   3 ?   -3.2   0.0         6   7.7e+03     113     135 ..     408     428 ..     387     429 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.1
                 EEEEE--TT--HHHHH--B--. CS
       AAA_5  27 veyvqltrdtteedlkgrreik 48 
                  ++vql ++ +++d+  ++++ 
  CCE31397.1 216 KFVVQLGERVSPTDIEEGMRVG 237
                 6899**************9996 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 6.2e-07
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEver 76 
                 lL GppGtgK+  a+ +a ++ +++  v +++      l++++   +g +     +l + ar  +++i+++DE++ 
  CCE31397.1 309 LLYGPPGTGKTLCARAVANRTDATFIRVIGSE------LVQKYVG-EGARMV--RELFEMARtkKACIIFFDEIDA 375
                 8*********************9999999876......8888883.333333..44444444459*********96 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6
                 ...-EEEEEESS--.-TT-TTHHHH CS
       AAA_5 113 r..frviatanpldrslnelspalr 135
                 r  + v++++n+++     l+pal 
  CCE31397.1 408 RgnIKVMFATNRPS----TLDPALM 428
                 24578899999888....7777775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.6e-06    0.0072       8      40 ..     308     331 ..     303     344 .. 0.85
   2 ?    2.5   0.0      0.12   1.6e+02      70     127 ..     347     415 ..     331     419 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.6e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerp 40 
                  +++G++GtGKT+++r ++++ d         +
  CCE31397.1 308 ALLYGPPGTGKTLCARAVANRTD---------A 331
                 589****************9984.........3 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.12
      AAA_22  70 aerlsseellealeqalraravielliiDEaqhlr....s..........eealeeLrsllnl.srkgvqliL 127
                 +   +  ++++ l + +r++++  ++  DE++ +                 ++le + +l  + +r ++++ +
  CCE31397.1 347 G---EGARMVRELFEMARTKKA-CIIFFDEIDAVGgarfDdgaggdnevqRTMLELITQLDGFdARGNIKVMF 415
                 4...556677777777777777.9*********9766551555666677788888886666666777777765 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.7   2.1e+03      12      62 ..     163     217 ..     148     224 .. 0.72
   2 !   18.2   0.0   1.7e-06    0.0021       7     103 ..     309     399 ..     304     415 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.7
                 TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT CS
       AAA_2  12 tgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappg 62 
                 tg   + l +  a+ +++++++++ +a +++++e    +e  +++v + ++ +++
  CCE31397.1 163 TGLAPPHLWDIAADRQRMSEDQPFQVARCTKIIEdekgDESKKKYVIHVKQIAKF 217
                 5555666777788888889999999999999999666545555666655555555 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1.7e-06
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqil 103
                 ll gp g+Gkt+ a+a+a+  ++    ++ir+  sel +    e +++v +l      + + ++  i+++DEid +   +        ++Vqr +L ++
  CCE31397.1 309 LLYGPPGTGKTLCARAVANRTDA----TFIRVIGSELVQkyVGEGARMVREL----FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELI 399
                 788******************96....9***999999992222333333333....3455666778**********99633334445579*****9997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-05     0.016      24      51 ..     305     332 ..     277     356 .. 0.77
   2 ?    1.1   0.0      0.35   4.4e+02     124     146 ..     354     380 ..     339     403 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
      AAA_16  24 pelvllsGesGvGKsslvrellralekd 51 
                 p   ll+G++G+GK+  +r+++++  ++
  CCE31397.1 305 PKGALLYGPPGTGKTLCARAVANRTDAT 332
                 3789*****************9754444 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.35
      AAA_16 124 krllallsrderplvlvlDdlq.....w 146
                 ++l++ +++ ++  ++++D+++     +
  CCE31397.1 354 RELFEMART-KKACIIFFDEIDavggaR 380
                 556677777.777********9555554 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.9e-06    0.0037      51     116 ..     303     373 ..     254     377 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.9e-06
      DUF815  51 lpannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkelpklvellr...erperfilfvDDL 116
                  p + +LL+G  GtGK  + +a+ n++ ++ +r+i  e+ ++ + e  ++v++l    ++++ +i+f D +
  CCE31397.1 303 DPPKGALLYGPPGTGKTLCARAVANRTDATFIRVIgsELVQKYVGEGARMVRELFemaRTKKACIIFFDEI 373
                 466789*****************************88888999999888888765232678899***9975 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.8e-05     0.023      36      93 ..     308     373 ..     302     379 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.8e-05
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvkl.kitsgPvleka.gdlaalltnl......eekdvlfidei 93 
                  llyGpPG Gkt  a+ +a+  ++++ ++  +  ++k  g+ a ++ +l      ++  ++f dei
  CCE31397.1 308 ALLYGPPGTGKTLCARAVANRTDATFiRVIGSELVQKYvGEGARMVRELfemartKKACIIFFDEI 373
                 69*******************998851555555555532454545444422122234457777777 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.3e-05     0.081       4      40 ..     310     351 ..     308     371 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.3e-05
      AAA_28   4 itGgestGKTtlleaLaar....gypvv.pEaareileekla 40 
                 + G+++tGKT  ++a a+r     ++v+  E + +++ e+++
  CCE31397.1 310 LYGPPGTGKTLCARAVANRtdatFIRVIgSELVQKYVGEGAR 351
                 78***************8876556777777777777766553 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.7e-05      0.12      27      69 ..     299     333 ..     291     377 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.7e-05
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkldkekylsltinf 69 
                 +l ++  k  ll+Gp GtGKt++++ + ++ d         +f
  CCE31397.1 299 NLGIDPPKGALLYGPPGTGKTLCARAVANRTD--------ATF 333
                 5566667889****************999998........233 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.5e-05      0.12       3      39 ..     309     347 ..     308     369 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.5e-05
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllssdtlrrrlfg 39 
                 ll G+pG+GK+  a+ ++++++  ++++   +l ++++g
  CCE31397.1 309 LLYGPPGTGKTLCARAVANRTDatFIRVIGSELVQKYVG 347
                 578***************999966666666666666555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00016       0.2       2      62 ..     309     360 ..     308     377 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvk 62 
                   +lyGp+g+GK+++a+ +          +++d +++r   ++ +++Y g+ + ++ ++ ++ 
    CCE31397.1 309 LLYGPPGTGKTLCARAV---------ANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA 360
                   69**************3.........45567777778888888888877777777766655 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00016       0.2       3      30 ..     309     336 ..     307     369 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
       AAA_3   3 llegvPGlaktllvkalakaldlefkri 30 
                 ll g PG++ktl ++a+a+  d++f r+
  CCE31397.1 309 LLYGPPGTGKTLCARAVANRTDATFIRV 336
                 8999*********************998 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00026      0.33       6      77 ..     309     377 ..     305     415 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00026
      AAA_14   6 vitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevp 77 
                 ++ G+  +GKT  ++ ++++       ++ +   +  +k   + +++ ++++e+++++k  ++f+DEi  v 
  CCE31397.1 309 LLYGPPGTGKTLCARAVANRTD---ATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVG 377
                 789999*******999996666...5555554444444444444467778888765668888******9884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3531.12
//
Query:       CCE31398.1  [L=278]
Description: probable ubiquinol-cytochrome-c reductase cytochrome c1 precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-90  302.1   0.0    2.9e-90  301.8   0.0    1.0  1  Cytochrom_C1     Cytochrome C1 family
     0.0068   16.7   0.0      0.015   15.6   0.0    1.6  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
  ------ inclusion threshold ------
       0.17   13.0   0.1       0.75   11.0   0.1    2.1  2  Cytochrom_C      Cytochrome c


Domain annotation for each model (and alignments):
>> Cytochrom_C1  Cytochrome C1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.8   0.0   4.8e-94   2.9e-90       1     217 [.      42     259 ..      42     261 .. 0.99

  Alignments for each domain:
  == domain 1  score: 301.8 bits;  conditional E-value: 4.8e-94
  Cytochrom_C1   1 wsfegifgkfDkaqlqRGlqvykevcsaCHslklvafrnLaelglteeevkalaaeyevkdgpddegemfeRpgkpaDklpspyaneeaaraangga 97 
                   w +e++f++fD+++l+RG+qvy+evc++CHsl+++ +r+L++++lt +e+kala+e+e+ d+pd eg++++Rpgk++D++p+py+neeaaraan+ga
    CCE31398.1  42 WVHEQWFKTFDHQALRRGFQVYREVCASCHSLSRIPYRSLVGTVLTLDEAKALAEENEYPDEPDSEGNVHMRPGKLSDYIPDPYKNEEAARAANNGA 138
                   999********************************************************************************************** PP

  Cytochrom_C1  98 lppDLsllvkArkggadYiyslLtgY.eeppagvevkegqyyNkyfpggviamakpLsdgqveyedgtpatveqmakDvtaFLaWaaepklearkkl 193
                   lppDLsl++k+r+gg +Yi+slLtgY eepp g+++  g+++N+yfpg+ i ma++L dg veyed+tpa+++qmakDv++FL+Waaep++++rk++
    CCE31398.1 139 LPPDLSLIIKGRHGGCNYIFSLLTGYpEEPPPGAQLAPGMNFNPYFPGTGIGMARVLYDGLVEYEDETPASTSQMAKDVVEFLNWAAEPEMDDRKRM 235
                   **************************777899***************************************************************** PP

  Cytochrom_C1 194 glkvilfllilavllylvkrkiwa 217
                   glkv+++ + l +++++vkr +wa
    CCE31398.1 236 GLKVLIVTSTLFAISVWVKRYKWA 259
                   ***********************8 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.5e-06     0.015       2      19 ..      55      72 ..      54     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.5e-06
  Cytochrome_CBB3  2 aaaaGaalykknCasCHg 19
                     a+++G ++y++ CasCH 
       CCE31398.1 55 ALRRGFQVYREVCASCHS 72
                     6899*************8 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00013      0.75       3      19 ..      58      74 ..      56     135 .. 0.83
   2 ?   -1.2   0.0      0.81   4.8e+03      75      89 ..     208     222 ..     177     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                 -HHHHHHTTGGGTB-SS CS
  Cytochrom_C  3 rGkelftanCaaCHgve 19
                 rG +++ + Ca+CH++ 
   CCE31398.1 58 RGFQVYREVCASCHSLS 74
                 899***99******986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.81
                  T--HHHHHHHHHHHH CS
  Cytochrom_C  75 rlteqeiadlaaYLk 89 
                    t q ++d++++L+
   CCE31398.1 208 ASTSQMAKDVVEFLN 222
                  567888999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2154.08
//
Query:       CCE31399.1  [L=431]
Description: probable ran GTPase activating protein 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-08   33.7  13.9    0.00051   19.9   0.0    6.9  7  LRR_6           Leucine Rich repeat
    2.7e-07   30.8   9.6      0.003   17.9   0.0    5.2  5  LRR_4           Leucine Rich repeats (2 copies)
    0.00054   20.1   0.7         28    5.8   0.0    5.4  5  LRR_1           Leucine Rich Repeat
  ------ inclusion threshold ------
      0.022   14.5  11.3       0.17   11.7   0.1    4.5  3  LRR_8           Leucine rich repeat
       0.11   12.5  14.6       0.22   11.5  14.6    1.5  1  PGA2            Protein trafficking PGA2
       0.23   10.9  18.8       0.31   10.4  18.8    1.2  1  SDA1            SDA1
        1.3    8.9   9.7        1.8    8.4   9.7    1.2  1  Myc_N           Myc amino-terminal region
        2.3    6.1  10.1        3.3    5.6  10.1    1.1  1  FRQ             Frequency clock protein
        3.5    8.0   6.3        2.3    8.6   3.6    2.2  2  DUF1840         Domain of unknown function (DUF1840)
        5.5    5.1  22.0        7.9    4.6  22.0    1.1  1  Nop14           Nop14-like family
        5.5    5.7   8.7        7.5    5.3   8.7    1.1  1  Nucleo_P87      Nucleopolyhedrovirus capsid protein P87
        6.1    7.3  18.3         14    6.1  18.3    1.6  1  CENP-B_dimeris  Centromere protein B dimerisation domain
        6.5    6.5   5.6         11    5.8   5.6    1.2  1  TraF            F plasmid transfer operon protein
        6.9    6.5  17.6         15    5.4  17.6    1.6  1  Sigma70_ner     Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.6     0.066        85       2      16 ..      94     108 ..      93     109 .. 0.89
   2 ?    3.8   0.1     0.055        71       5      16 ..     125     136 ..     122     142 .. 0.91
   3 ?   -0.2   0.0       1.1   1.4e+03       5      23 ..     195     213 ..     192     214 .. 0.78
   4 !    8.5   0.1    0.0018       2.4       5      24 .]     224     243 ..     221     243 .. 0.94
   5 ?   -1.2   0.2       2.4     3e+03       6      24 .]     253     271 ..     251     271 .. 0.86
   6 !   19.9   0.0     4e-07   0.00051       1      24 []     278     301 ..     278     301 .. 0.96
   7 ?   -0.9   0.0       1.8   2.4e+03       5      16 ..     311     322 ..     309     325 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.066
       LRR_6   2 nthLteLdLsgNdIg 16 
                 +++L +++L++N +g
  CCE31399.1  94 HPNLHTVNLNDNAFG 108
                 789*********987 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.055
       LRR_6   5 LteLdLsgNdIg 16 
                 L++L+L+ N++g
  CCE31399.1 125 LQHLHLNNNGLG 136
                 99********99 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.1
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 ++   +  N+I  eG++ L
  CCE31399.1 195 IKVIKMVQNGIRQEGISHL 213
                 56666778*******9987 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0018
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 L+ LdL++N ++  G++aLa
  CCE31399.1 224 LEILDLQDNTFTLMGGKALA 243
                 899***************98 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 2.4
       LRR_6   6 teLdLsgNdIgDeGaeaLa 24 
                 +eL + +  ++ +G+  La
  CCE31399.1 253 RELGIGDSLLSAKGGLLLA 271
                 7899999999999999887 PP

  == domain 6  score: 19.9 bits;  conditional E-value: 4e-07
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +n++L++L L++NdI+  G+++La
  CCE31399.1 278 KNQKLETLRLQFNDITALGVKSLA 301
                 69********************98 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 1.8
       LRR_6   5 LteLdLsgNdIg 16 
                 L+  +L+gN+++
  CCE31399.1 311 LKRIELNGNKFT 322
                 89999****987 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   1.3     0.022        28      12      33 ..      87     105 ..      76     111 .. 0.78
   2 ?    5.6   0.1     0.017        22       3      13 ..     125     135 ..     125     151 .. 0.84
   3 ?   -1.6   0.0       3.3   4.3e+03      23      36 ..     165     177 ..     160     180 .. 0.56
   4 ?    2.6   0.0      0.16     2e+02       2      12 ..     223     233 ..     213     240 .. 0.76
   5 !   17.9   0.0   2.3e-06     0.003       1      35 [.     280     321 ..     280     330 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.022
                 ---E-S-HHH-TT--EEE-.-S CS
       LRR_4  12 qltdiplleklpnLkeLdLsgN 33 
                  lt+   l+  pnL++++L++N
  CCE31399.1  87 LLTS--VLN-HPNLHTVNLNDN 105
                 4555..566.79*******888 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.017
                 --EEE--SS-- CS
       LRR_4   3 LevLdLsnNql 13 
                 L++L+L+nN l
  CCE31399.1 125 LQHLHLNNNGL 135
                 89999999987 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.3
                 TT--EEE-.-S--- CS
       LRR_4  23 pnLkeLdLsgNnli 36 
                 p+L+++ + +N ++
  CCE31399.1 165 PDLETVICGRN-RL 177
                 55666555334.33 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.16
                 S--EEE--SS- CS
       LRR_4   2 nLevLdLsnNq 12 
                  Le+LdL++N 
  CCE31399.1 223 ELEILDLQDNT 233
                 46777777665 PP

  == domain 5  score: 17.9 bits;  conditional E-value: 2.3e-06
                 SS--EEE--SS---E-S-..HH.....H-TT--EEE-.-S-- CS
       LRR_4   1 pnLevLdLsnNqltdipl..le.....klpnLkeLdLsgNnl 35 
                 ++Le+L L+ N +t ++   l+     +lp Lk + L+gN +
  CCE31399.1 280 QKLETLRLQFNDITALGVksLAsaardSLPALKRIELNGNKF 321
                 69****************8855678878*********99933 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1       1.2   1.6e+03       1      12 [.      96     107 ..      96     119 .. 0.83
   2 ?    5.8   0.0     0.022        28       2      12 ..     125     135 ..     124     154 .. 0.84
   3 ?    1.3   0.0      0.66   8.4e+02       2      12 ..     224     234 ..     223     251 .. 0.85
   4 ?    3.4   0.0      0.14   1.8e+02       1      20 [.     281     300 ..     281     303 .. 0.86
   5 ?    1.4   0.0      0.62   7.9e+02       2      12 ..     311     321 ..     310     334 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.2
       LRR_1   1 nLrhLdLsnnpl 12 
                 nL + +L++n +
  CCE31399.1  96 NLHTVNLNDNAF 107
                 89******9965 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.022
       LRR_1   2 LrhLdLsnnpl 12 
                 L+hL+L+nn l
  CCE31399.1 125 LQHLHLNNNGL 135
                 9********98 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.66
       LRR_1   2 LrhLdLsnnpl 12 
                 L+ LdL +n +
  CCE31399.1 224 LEILDLQDNTF 234
                 99****99976 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.14
       LRR_1   1 nLrhLdLsnnpllglppnsf 20 
                 +L++L L  n ++ l+  s+
  CCE31399.1 281 KLETLRLQFNDITALGVKSL 300
                 7**********988887776 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.62
       LRR_1   2 LrhLdLsnnpl 12 
                 L+++ L++n +
  CCE31399.1 311 LKRIELNGNKF 321
                 9********98 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   4.7       2.3   2.9e+03      27      35 ..     125     133 ..      95     136 .. 0.55
   2 ?    4.9   0.0     0.017        22      22      45 ..     219     242 ..     205     246 .. 0.66
   3 ?   11.7   0.1   0.00013      0.17       2      40 ..     281     324 ..     280     334 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.3
                 --EEE--SS CS
       LRR_8  27 LkvLdLsnN 35 
                 L++L+L+nN
  CCE31399.1 125 LQHLHLNNN 133
                 444444444 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.017
                 TT-TT--EEE--SS---GGGGGGG CS
       LRR_8  22 kglsnLkvLdLsnNllttlspgaf 45 
                 ++ + L++LdL +N+ t +  +a+
  CCE31399.1 219 HQAHELEILDLQDNTFTLMGGKAL 242
                 445667788888887777766665 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00013
                 T-SEEE-TTS--SEE-TTSST.....T-TT--EEE--SS---GG CS
       LRR_8   2 nLtsLdLsnNrltslddeaFk.....glsnLkvLdLsnNllttl 40 
                 +L++L L++N +t+l+ ++       +l++Lk ++L+ N+ t  
  CCE31399.1 281 KLETLRLQFNDITALGVKSLAsaardSLPALKRIELNGNKFTED 324
                 799**********999876532222259***********99875 PP

>> PGA2  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  14.6   0.00017      0.22      57     136 ..     344     422 ..     330     424 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
        PGA2  57 kaakkakvspnalRggeaksgesdedddegeeeedvakasgvpewgkkarkrqkkvlkkleeeaeerkkeeeddkdiael 136
                  ++++++ + ++l + e  s++++ed++e++e+e+ +k +++++ g +a+ r  k++k+ ee++e +   + +dk +++l
  CCE31399.1 344 GDEANVEWGVDSLSDLEDLSSDEEEDEEEEDEDEEEEKDEDQEDEGVTAEERAEKLIKEAEEAQE-EPVVQLTDKAVDDL 422
                 333566677778888775433333333333444448899999**********************9.77888899888876 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  18.8   0.00024      0.31      93     171 ..     338     408 ..     272     430 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
        SDA1  93 edsddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeee..eeeeeeeeeee 171
                   ++++ de++ e+  d+ s      +  d +sdee ++e++e+edeeee++e++e+e  + ee++e+  +   e ee++e
  CCE31399.1 338 RRENSAGDEANVEWGVDSLS------DLEDLSSDEE-EDEEEEDEDEEEEKDEDQEDEGVTAEERAEKliK---EAEEAQE 408
                 22222233333333332222......1223444444.2222223333333333333333333333332221...1111111 PP

>> Myc_N  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   9.7    0.0014       1.8     221     268 ..     354     401 ..     300     420 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
       Myc_N 221 ssssdskalssseedvlsesdeeeeeeeeeeeeidVVtvekrrssskr 268
                 +s sd ++lss+ee+ ++e+de+eeee++e++e + Vt e+r +   +
  CCE31399.1 354 DSLSDLEDLSSDEEEDEEEEDEDEEEEKDEDQEDEGVTAEERAEKLIK 401
                 5678888999999999999999999999*************9876553 PP

>> FRQ  Frequency clock protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  10.1    0.0026       3.3     879     933 ..     346     400 ..     317     421 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0026
         FRQ 879 rranphqsdgYpdkvdlssgdeegeepddddeakekeeedssdekklprlprear 933
                 + +++  +d+  d +dlss++ee+ee +d+de++ek+e+++++  + ++++++  
  CCE31399.1 346 EANVEWGVDSLSDLEDLSSDEEEDEEEEDEDEEEEKDEDQEDEGVTAEERAEKLI 400
                 344455678899**************99999999888665555555444444333 PP

>> DUF1840  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       9.6   1.2e+04      40      55 ..     145     160 ..     136     168 .. 0.48
   2 ?    8.6   3.6    0.0018       2.3      47     101 ..     357     408 ..     331     419 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 9.6
     DUF1840  40 edlpaaiakLeaaiaa 55 
                 + l ++ ak eaa ++
  CCE31399.1 145 DALTELHAKKEAARKE 160
                 3333333333333332 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0018
     DUF1840  47 akLeaaiaaekaeeaeeeeeeeeeekeeekeeeeeevsLaqRalPLlelLkaaak 101
                 + Le   ++e+++e+ee+e+e   e+e+++ +e+e v  ++Ra  L++  ++a++
  CCE31399.1 357 SDLEDLSSDEEEDEEEEDEDE---EEEKDEDQEDEGVTAEERAEKLIKEAEEAQE 408
                 455555555555544444433...3356677788889999999887765555555 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  22.0    0.0062       7.9     333     419 ..     328     408 ..     306     429 .. 0.40

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0062
       Nop14 333 efglgkglkataeeeeeededdfeedddlveseseeee.eeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeelleeek 419
                  + l++ l+ +++e++  de + e      +s s+ e+ +++ee++eeeede+eeee+   ++d++d+    ee  ++l++e++e+++
  CCE31399.1 328 IIALQTLLD-ERRENSAGDEANVEWGV---DSLSDLEDlSSDEEEDEEEEDEDEEEEK---DEDQEDEGVTAEERAEKLIKEAEEAQE 408
                 333444443.22233333333333333...2333332222222222222222222222...222222222233333333333322222 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.7    0.0059       7.5     406     469 ..     355     416 ..     280     421 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0059
  Nucleo_P87 406 rarklqelssdededssdekevDkekerkRRreeDkdf.LrlkalelskyagvneRlekivqvtk 469
                    +l++lssde+e  ++e+e ++e+e k   +eD+      +a +l+k+a      e +vq t+
  CCE31399.1 355 SLSDLEDLSSDEEE--DEEEEDEDEEEEKDEDQEDEGVtAEERAEKLIKEA-EEAQEEPVVQLTD 416
                 33455666677777..44444455566667777787761567999999999.3445667888886 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  18.3     0.011        14       9      38 ..     359     388 ..     348     401 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.011
  CENP-B_dimeris   9 gedsesesdeeeeeeeedeededeeddedd 38 
                      ed  s+ +e+eeee+edee+e +ed+ed+
      CCE31399.1 359 LEDLSSDEEEDEEEEDEDEEEEKDEDQEDE 388
                     345445444444444555555555555443 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.6    0.0085        11      13      67 ..     366     421 ..     355     425 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0085
        TraF  13 eekkekakppkaakpalkep.tseesatesaaelrkeleelldkAilnPteenvea 67 
                 ee++e+++++++++ + +++  + ++a+e+a++l ke ee++++++ + t+++v +
  CCE31399.1 366 EEEDEEEEDEDEEEEKDEDQeDEGVTAEERAEKLIKEAEEAQEEPVVQLTDKAVDD 421
                 3333333333334444444417778999*******************999999876 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  17.6     0.012        15      22      86 ..     349     428 ..     329     430 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.012
  Sigma70_ner  22 LrdiidGflD.......eeeeeeeeeeeedeeeeeee..eddd........eeeseseaadeeelkeealekfeelreqyek 86 
                  ++  +d + D       e  ee+eeee+edeeee++e  ed++        +  +e+e+a+ee+  + + + +++l++q+ k
   CCE31399.1 349 VEWGVDSLSDledlssdE--EEDEEEEDEDEEEEKDEdqEDEGvtaeeraeKLIKEAEEAQEEPVVQLTDKAVDDLAAQLGK 428
                  444455555555554322..22222222222222222113333555555553445566666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1474  (0.0822132); expected 358.6 (0.02)
Passed bias filter:                      747  (0.0416643); expected 358.6 (0.02)
Passed Vit filter:                       163  (0.00909142); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 3191.11
//
Query:       CCE31400.1  [L=235]
Description: uncharacterized protein CPUR_05253 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1946.22
//
Query:       CCE31401.1  [L=323]
Description: probable 20S proteasome subunit C1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-45  154.3   0.0    2.8e-29  102.0   0.0    2.2  2  Proteasome      Proteasome subunit
    7.2e-11   41.6   0.7      1e-10   41.1   0.0    1.7  2  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   3.1e-33   2.8e-29       1     117 [.      62     176 ..      62     195 .. 0.95
   2 !   50.3   0.0   2.1e-17   1.9e-13     115     190 .]     200     276 ..     196     276 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 3.1e-33
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 v+ G+t++Gi++kdgvvla++k ++  skl++    ++i  id hig++++G+++D+r ++ rar ea ++r ++++pip++ l++r+ +++qayt ++
  CCE31401.1  62 VESGGTSIGIRCKDGVVLAVEKAVP--SKLVKAGADKRIGTIDSHIGLVYSGMVPDGRHFITRARDEACSWRENFKTPIPISDLASRMGSYAQAYTMYG 158
                 678**********************..***999999*************************************************************** PP

                 TTTTTSEEEEEEEEETTT CS
  Proteasome 100 grrpfgvslliagvdeeg 117
                 ++rpfg+ ++i+gvd  +
  CCE31401.1 159 SVRPFGITAIIGGVDTSE 176
                 ***************655 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 2.1e-17
                 TTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHH..STTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 115 eeggpeLyqidpsGsyieekdavaiGsgseaaktalekey..kedltleeavelavkalkealerdklsgknievavi 190
                 ++ggp+Ly+++psGsy+++ + +a+G+g++ ak+ lek+   +  +tleeav+ av++++ a ++ k +  ++e++++
  CCE31401.1 200 KHGGPFLYMVEPSGSYWGY-YGAATGKGRQTAKAELEKLDlqSGTMTLEEAVKEAVRIMYVAQKDNKDKDFELEMTWV 276
                 6899***************.8*******************99999*******************99999999999876 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.2e-14     1e-10       1      23 []      39      61 ..      39      61 .. 0.99
   2 ?   -3.5   0.3      0.99   8.8e+03      10      13 ..     114     117 ..     114     117 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.2e-14
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YD+  ++FSPdGR fQVEYA kA
      CCE31401.1 39 YDLLNSIFSPDGRNFQVEYAVKA 61
                    9*********************9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.99
  Proteasome_A_N  10 PdGR 13 
                     PdGR
      CCE31401.1 114 PDGR 117
                     9**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2591.21
//
Query:       CCE31402.1  [L=1096]
Description: related to DNA polymerase V [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.8e-185  617.7  34.8   2.4e-183  611.3  34.8    2.1  1  DNA_pol_phi  DNA polymerase phi
     0.0023   17.4  22.9     0.0058   16.1  22.9    1.6  1  SDA1         SDA1
  ------ inclusion threshold ------
       0.43   10.2  12.6      0.089   12.4   4.4    3.5  4  GET2         GET complex subunit GET2


Domain annotation for each model (and alignments):
>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  611.3  34.8  4.1e-187  2.4e-183       2     767 .]      98     918 ..      97     918 .. 0.90

  Alignments for each domain:
  == domain 1  score: 611.3 bits;  conditional E-value: 4.1e-187
  DNA_pol_phi   2 alkRLirglasdresarlgfslaLtelLsqve...........eltlkeiLellkkklkpqgskkgkeerdalfGrLfGlqAllqsgllskeeatlee 88 
                   ++RL+rglas+re +rlgfsl++te+L+q+            +lt++++L +l +k+k  g+++g+eer++++G++fGl+++++s++ls++    ++
   CCE31402.1  98 LSRRLFRGLASGREGSRLGFSLVITEILQQLYgdgdlaqtkytGLTFEKVLGILADKTKSVGNVSGQEERNHHLGQVFGLECFVKSKILSRDV---SR 192
                  689****************************************************************************************98...** PP

  DNA_pol_phi  89 lkevlqlLielakkkewLresclwvlvdaveklpeeafeeeaakalleelskaklaktpeglallLalqekfpdlklpkllkklwksedpLskenlpt 186
                  +++vl+ L++l++kk wLr +c+w+lv+a+e++ e++      ka+l+++  a+ a+tpeg+a +++  +++p l++      +wk  +pLs++ l++
   CCE31402.1 193 WNAVLDMLLKLSHKKIWLRPQCGWILVQAMEQMTEDVT-----KATLTKIVGAGMAQTPEGVAAWIVSLNRYPRLQV-----APWK--NPLSNKSLKE 278
                  ***********************************997.....9*****************************8777.....56*5..6********* PP

  DNA_pol_phi 187 LakvLkes......ee.eeekekk..sanwnpklhfvwdvildllkkkkskeeskeasfeeFWqvvVdeslfsakssserkylgfqvfqkalpkls.. 273
                  La vLkes      +  e+++     +a+w+++lhfvwd+il+++ k +++ +sk ++f +FW +vVd++lfs+++++ +k+ gf vf+k+l+ +   
   CCE31402.1 279 LAAVLKESfkdaakDPkEKQN--GakQASWSAQLHFVWDLILARFLKLSDSSNSKDEDFDQFWCRVVDDGLFSKQATDGQKFKGFMVFEKMLKGFAqk 374
                  *********987532222233..257*******************************************************************74445 PP

  DNA_pol_phi 274 asqipdlfsknlmrclinqlssedryLhkaaqkalkeiqevvkkdpekalavltaLlgkngslnfDkltktktvekllksldeeglkklvdllkslil 371
                  +s +++lfs+n+m cl+nq + edryL++aa+kalk+i evv+++p+ ++++l +Llgk+gs+ fD+   +ktv+k+l++++e+++ +++ + k+ i+
   CCE31402.1 375 PSNLESLFSRNFMSCLLNQAAREDRYLNRAATKALKAIEEVVSSHPDALAPILANLLGKHGSYGFDQRSSSKTVDKILQNVNEHNVASVLAVVKRPIK 472
                  999*********************************************************************************************99 PP

  DNA_pol_phi 372 s.snee..sdekeaesrrqwildqLlsivrskklkkeee.....................kewvqeilkflavlgffkakssieetekkpspalsest 445
                    ++++  +++ ++ +   ++++ L++  ++++++k+e+                     +    + l+ l+++++ ++        + p+ al++++
   CCE31402.1 473 LmKSQSiiEAQVTVRNYSDYLAKILSAFASAASSAKDEKagkpagedgpkrksadkkpatSGSFDKTLQELTHVAYGHP-------AEIPKEALTDQI 563
                  9644447677777777777888888888888888777779******************97777777*************.......9*********** PP

  DNA_pol_phi 446 relcrerlfslLselssqsgsekdgeswlykllellktlekskkvekliikldeelekawkkalkvlkklskkekkeekaakaqafelLlllvlLqly 543
                  re+cr+rl  +L++l +              +  ++k+++++ +    + ++++e++ka+++al+ ++kl k++     +  aq++ +L++ +++qly
   CCE31402.1 564 REMCRSRLETSLAKLARA----------STDFAVFCKAVASIDS---SAMTMTAEIKKAKDEALSRMEKLLKRKL----D-AAQGLAMLHAISIFQLY 643
                  ******************..........3334444444444444...3679********************9999....4.79*************** PP

  DNA_pol_phi 544 sgdeeavsvledLkicykkafskkkkkkkkeeepewvevlveiLLsllsqssallRklseqVfeafasevteegLellldvLearenkegqaelfede 641
                  ++d++a++vl+dL++cy+k+ s  ++ k   ++   +e+lveiLLs+++++s+l+R++s+qVf++f+s++++e+++ll+  L ++e+ +gq+elf++e
   CCE31402.1 644 NEDPDAMDVLDDLSQCYDKLGSGDATGK--GSTDGGSELLVEILLSMVARPSSLMREVSQQVFGVFTSQMSDESMQLLTGPLASDESTKGQRELFNTE 739
                  ********************99877666..9****************************************************************777 PP

  DNA_pol_phi 642 dedeeddeeeeeeddeededse..eddde..................eesdedeededdedvdeid................................ 687
                  d+  + d++ +e +de+d+++   ed ++                  +    de++e+de++d++d                                
   CCE31402.1 740 DDAMDVDSDASEGEDEDDKSVIdvEDVSDfeidsnlefvdvkgdddgD----DEQEEEDEEDDDDDasdgdgadedsdnstsnpspskalnqdghwdn 833
                  777776666666655555555444444449999*********964431....333333333333334557788899********************** PP

  DNA_pol_phi 688 ..elreklaealgesg..ededdddsdsDedmdDeqMmaLDeqLaeiFkerkka.knkkkkekkeakenvinFKiRVLDLleiyv 767
                    el++ l + l++++  +d+++++s+s+ dm+D qM+aL++qL+++   r ka k + +k+kk+ak++v+nFK+R+LDLl+iyv
   CCE31402.1 834 peELDNILGKILNSHRldQDAEAESSSSEGDMSDSQMFALEAQLSAAIAPRIKAnKPDARKQKKDAKQSVVNFKHRILDLLDIYV 918
                  ****************977778888888888***********************99****************************8 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  22.9   9.7e-07    0.0058      55     181 ..     698     886 ..     688     912 .. 0.50

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.7e-07
        SDA1  55 ekkakkfGeeevaegieGleLlekwkeeekkekre..............eeeedsddeddeedwevesdddseedseggwidvesdeeeieesdesede 139
                 e +++ fG  +   + e ++Ll    +++++ k +              ++ ++ +dedd++  +ve+ +d e ds+ +++dv+ d++  + ++e+ede
  CCE31402.1 698 EVSQQVFGVFTSQMSDESMQLLTGPLASDESTKGQrelfnteddamdvdSDASEGEDEDDKSVIDVEDVSDFEIDSNLEFVDVKGDDDGDD-EQEEEDE 795
                 5567777777776677777777766666665555445666665555554333444455666666666666667888888888887777322.2223333 PP

        SDA1 140 eeeeeeeeekeekeeeeeeee....................................eeeeeeeeeeeeeekekkkk...............k 181
                 e+++++ ++ +  +e+++  +                                    ++++e e++++e + +++++               k
  CCE31402.1 796 EDDDDDASDGDGADEDSD--NstsnpspskalnqdghwdnpeeldnilgkilnshrlDQDAEAESSSSEGDMSDSQMfaleaqlsaaiapriK 886
                 333332222222222222..1223556666665555555555555555555555444333333333333222222225666655555544431 PP

>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.058   3.5e+02     100     152 ..     327     380 ..     318     466 .. 0.62
   2 ?   -0.8   0.0      0.16   9.4e+02     133     180 ..     418     460 ..     397     533 .. 0.59
   3 ?   12.4   4.4   1.5e-05     0.089      62     176 ..     788     907 ..     745     953 .. 0.54
   4 ?   -1.3   0.1      0.22   1.3e+03      85     156 ..     986    1027 ..     957    1047 .. 0.48

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.058
        GET2 100 esepeapqldqllkqllqqqqqgnsensqdaesstP.dlfsqllkmmkqgegg..s 152
                  s+++++++dq+   ++     +  ++++d+++    ++f+++lk ++q+ ++  s
  CCE31402.1 327 SSNSKDEDFDQFWCRVVDDGLFS--KQATDGQKFKGfMVFEKMLKGFAQKPSNleS 380
                 45666667777776666553222..2222222323358888888888888777430 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.16
        GET2 133 stPdlfsqllkmmkqgeggsakseeetssspeeaeyqqqlleyhkyqv 180
                 s Pd ++++l ++  + g+      ++++ ++++ +++ l+++++++v
  CCE31402.1 418 SHPDALAPILANLLGKHGS-----YGFDQRSSSKTVDKILQNVNEHNV 460
                 4455555555555555554.....333333333333333333333322 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 1.5e-05
        GET2  62 sssssas.ehddpeied..iseiavkpkktasskkksplseesepeapqldqllkqllqqqqqgnsensqdaesstP.dlfsqllkmmkqgegg..sak 154
                 +++++++ e dd + +d   ++  + +++++ s++k   ++ + +++++ld++l ++l+++   ++ +  +++ss   + +sq++   +q +++     
  CCE31402.1 788 DEQEEEDeEDDDDDASDgdGADEDSDNSTSNPSPSKALNQDGHWDNPEELDNILGKILNSHRLDQDAE-AESSSSEGdMSDSQMFALEAQLSAAiaPRI 885
                 111111122222233330023333333333333333333334344455**********9954444444.444444445899999999999999966333 PP

        GET2 155 seeetssspeeaeyqqqlleyh 176
                 +++++++ ++++  +q++++ +
  CCE31402.1 886 KANKPDARKQKKDAKQSVVNFK 907
                 4444444445555555555444 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.22
        GET2   85 pkktasskkksplseesepeapqldqllkqllqqqqqgnsensqdaesstPdlfsqllkmmkqgeggsakse 156 
                  p++++++++++ +se+   ++pq + ll                            ll+   ++ g  ++s+
  CCE31402.1  986 PASSSKLSSSTGSSEA-AAAPPQEE-LLS---------------------------LLRDCHDEAGR-DDSQ 1027
                  4333333333333332.33333322.222...........................33333333333.2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1096 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       965  (0.0538234); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.30s 00:00:01.22 Elapsed: 00:00:00.43
# Mc/sec: 7696.42
//
Query:       CCE31403.1  [L=566]
Description: related to protein-tyrosine-phosphatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-11   45.1   0.0    2.3e-11   44.2   0.0    1.5  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   1.3e-15   2.3e-11       6     104 ..     377     474 ..     373     477 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.3e-15
   Rhodanese   6 kellekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellel.gidnkktvvvycdgggr.aaaaaallk..........k..lG 90 
                 +e+++++   ++D+R+++eYe ghI+gAvn              +++el+++ l +  i   + ++++c+ + + a   a+ ++          +  l 
  CCE31403.1 377 AEHFDQKM--VVDCRFEYEYEGGHIQGAVNH-------------NDKELFAAQLFEtPIVGRTLLIFHCEYSAHrAPLMARHVRshdrtvnaefYphLT 460
                 55665554..9********************.............777777777777677789************5555577888777777665526699 PP

   Rhodanese  91 yknvsvldGGfkaw 104
                 y++v++l+GG++++
  CCE31403.1 461 YPEVYILEGGYSDF 474
                 99*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 4475.17
//
Query:       CCE31404.1  [L=563]
Description: uncharacterized protein CPUR_05257 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-22   78.3   0.0    7.8e-22   77.4   0.0    1.5  1  CwfJ_C_1  Protein similar to CwfJ C-terminus 1
    5.9e-18   65.6   1.3    1.1e-17   64.7   1.3    1.5  1  CwfJ_C_2  Protein similar to CwfJ C-terminus 2


Domain annotation for each model (and alignments):
>> CwfJ_C_1  Protein similar to CwfJ C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   8.7e-26   7.8e-22      10     115 ..     300     429 ..     288     438 .. 0.86

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 8.7e-26
                 HHHH-S----SS---SS--S-B-SSEEEE---S-S............STT-EEEEESS--SSTTSS-H.........HHHHHHHHHHHHHHHH...HHH CS
    CwfJ_C_1  10 sldsClfClsnpklekhlivsignkvYlalpkgpL............ssgHvliipieHisallslde.........evldeirkfrkalvkm...ykk 84 
                  +++C fClsnp+ ++h+  sig+++Y++++kgpL               H +iip+ H+++ +s+            + +e+ +fr+al +m    ++
  CCE31404.1 300 GPEQCYFCLSNPNIASHMCCSIGDEAYITTAKGPLptsstfadqslyFPAHFIIIPLPHAPTIPSMGSitdptsdavRTHNEMTRFREALQAMistKSS 398
                 579****************************************9999999***********9998877777899888999*************432235 PP

                 TT--EEEEEE-SSS-----EEEEE--HHHHT CS
    CwfJ_C_1  85 qdkdavvfEissersvHlaiqvipvpksisk 115
                 ++  av++Eis++r+vH+ +q+i +++ + +
  CCE31404.1 399 RKLGAVTWEISRDRNVHIMWQLIALQAATIQ 429
                 5678*******************99876655 PP

>> CwfJ_C_2  Protein similar to CwfJ C-terminus 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   1.3   1.3e-21   1.1e-17      27      99 .]     465     558 ..     441     558 .. 0.78

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 1.3e-21
                 -EEEEE.....TTT...................-..-EEE----HHHH-TTHHHHHHHHHTT--TTT.SS------S--H.HHHHHHHHHHTTT--X CS
    CwfJ_C_2  27 yfyvqf.....dyk...................gekgyghviedeerfdlqFareviaglLdlekrrkwrkpkrqskeeeekrveaFkkawkkyDwT 99 
                 yf v++     + +                   g+++++++  +++rfdlqF+r+via+lL+lekr  wr+ ++q++eee+++veaF++a++++D+T
  CCE31404.1 465 YFRVWLwaehdE-DaekengkdthqgqgkgkgkGKSLVMPL-PSDMRFDLQFGRRVIAKLLGLEKRFFWRD-CEQTVEEETRDVEAFREAFREWDFT 558
                 555555554430.1334444445555555555588899999.899**************************.************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4427.81
//
Query:       CCE31405.1  [L=2666]
Description: related to papaya ringspot virus polyprotein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.7e-196  651.9  11.8   8.8e-196  651.9   9.8    2.2  2  DRIM           Down-regulated in metastasis
    0.00048   20.2   3.8         98    3.6   0.0    7.5  7  HEAT           HEAT repeat
  ------ inclusion threshold ------
       0.03   14.2   5.3        7.3    6.5   0.1    5.3  6  DUF3385        Domain of unknown function (DUF3385)
       0.17   11.7   1.8       0.89    9.4   0.0    3.3  4  BP28CT         BP28CT (NUC211) domain


Domain annotation for each model (and alignments):
>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  651.9   9.8    2e-199  8.8e-196       2     622 ..     912    1522 ..     911    1523 .. 0.95
   2 ?   -3.9   0.0      0.66     3e+03     564     597 ..    2239    2272 ..    2233    2281 .. 0.78

  Alignments for each domain:
  == domain 1  score: 651.9 bits;  conditional E-value: 2e-199
        DRIM    2 wslkdlkalLklfakfknpkalykseelyeallelLsngdeeiQklALkclltyknpaltpYkenLenLlddkkfrdeLtkfklsseesieeehrae 98  
                  wsl+d+ka+L++fa+f n k+lyk++++y+all+l++ngd e+Q+lALk++l++k++++t+Y+enLe Lld+++f++eL++f+++ +++i++ehrae
  CCE31405.1  912 WSLADRKAMLGIFAQFINSKVLYKHTQVYDALLTLMENGDGEMQRLALKAILSWKQDGVTTYRENLEYLLDEARFKNELAVFLQG-DNMIKTEHRAE 1007
                  9***********************************************************************************9.666******** PP

        DRIM   99 lmpvllRiLyGrmiskkgssasgkagqqarRaavLrfLaglseeelssFldlalgplkkvleaaetqgsdelkelvnkldevdleevlplrrqlgfl 195 
                  lmpvllR+LyGr+i+kkg  asg++g+qa+R avLr+L   s++++  Fl++a ++lk+++++ ++ ++ ++++         +e v+  r+q+gfl
  CCE31405.1 1008 LMPVLLRLLYGRTIAKKG-VASGRNGLQATRLAVLRNL---SVQDMAGFLEIAAKKLKDIRVVGTKAHQ-KKLF---------SEPVIATRKQIGFL 1090
                  ******************.888999*************...*******************977775432.3333.........89************ PP

        DRIM  196 nlledvlkelgsklapflpkllklllyclaaaqrrlksssee......eeeeeeevla......sllkniRqlglkcLvdlfsnfgesedwspylda 280 
                  n+++++++elg++++p+++ l++ +lycl++a+r+l+ s+++      e    e+         sllk+iR+ g+kcL +lf+n++++ +w++y ++
  CCE31405.1 1091 NMVSSLISELGTNVEPYMDVLVNSVLYCLVYASRQLSGSASSdeeekeE----ED--VekisdlSLLKTIRTVGIKCLMALFQNAQNF-QWEAYQTL 1180
                  **********************************999888875533332....22..2346677**********************99.7******* PP

        DRIM  281 ifeevvsPrlekLpsenlqspsaLlkLfltWsssprlaplLak....ydssvlpavielLsapkakesVvefvldivenllkladeeeeeeedeeei 373 
                  i+e vv Prl++L++e++q++sa+l+Lf+tWs  p+ a +La       + vlpa+i++ s++k+k++V+ fvl+i++nl+kla ++++e+e++e i
  CCE31405.1 1181 IIEDVVAPRLANLSVETTQGVSAMLHLFATWSVLPKAALFLAPiddvFPQGVLPAIISCVSKEKTKDEVKIFVLNILQNLVKLALAPAQESEFNEII 1277
                  *******************************************9999889*********************************************** PP

        DRIM  374 gselLlphvsslLeylsalleksaaskkdkskellereleiLsrlaplvedseqassLldlllplLrkpsrrvsektkvelLkilenllrlyde.de 469 
                  +selL+ ++++ L++++++l++s+      s++lle+++e++++lap+++d ++++s+++++ +lL++p rrvs+ktk+++L i+e ++ l d+ ++
  CCE31405.1 1278 KSELLEANATETLSTITTVLHSSN-----LSNDLLESCVETVLSLAPVLRDLDSSQSVIRMSSFLLQQPPRRVSPKTKGRILLIVEGFVGLPDAaND 1369
                  ********************8773.....799***********************************************************888966 PP

        DRIM  470 vdlpekllktlsslfsrlkdreaRklLcevlkalakkdpeleevadllsdLNayskrrldepDfdrRlsAFkkineekyksltleqwlpllhnclff 566 
                    l e+++ktlsslfs++kdre+R +L+++l a++k+d  lee+a+l+s+LN++++ r+depDfdrRl+AF++i+ +++  +t++qwlp++hn++f 
  CCE31405.1 1370 QVLLEQVYKTLSSLFSYFKDRENRHALSRALLAISKQDAALEEIASLCSELNSFKEGRIDEPDFDRRLAAFNAISMSREVPFTPKQWLPIIHNLIFS 1466
                  66***************************************************************************99****************** PP

        DRIM  567 irdeeelsi.rsnAsellkrfieaaaskseeepskleleellkdillpalkrglrsk 622 
                  ir +ee+++ +sn++++++r+++ +a++++++  k+++ +l+ +illp++++g++++
  CCE31405.1 1467 IRLDEEFGVlSSNSADGMRRLVQNVADCKSDTM-KTAFYDLMRTILLPSIYSGAKEE 1522
                  *****************************9994.578*****************987 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.66
        DRIM  564 lffirdeeelsirsnAsellkrfieaaaskseee 597 
                  +f++ +++    r+ As ll+ ++++a ++++++
  CCE31405.1 2239 FFVLANDDSEKCRTFASGLLREVFQKADKQRTQQ 2272
                  555555555566***************9998776 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.88   3.9e+03      13      25 ..     220     232 ..     215     233 .. 0.85
   2 ?    2.8   0.0     0.039   1.8e+02       4      27 ..     670     693 ..     667     695 .. 0.90
   3 ?   -3.1   0.0       3.1   1.4e+04       1      18 [.    1511    1528 ..    1511    1535 .. 0.86
   4 ?    2.2   0.1     0.064   2.9e+02       5      28 ..    1774    1797 ..    1770    1800 .. 0.88
   5 ?    3.6   0.0     0.022        98       1      30 [.    2025    2054 ..    2025    2054 .. 0.91
   6 ?    3.5   0.0     0.023     1e+02       1      27 [.    2235    2261 ..    2235    2265 .. 0.87
   7 ?   -0.6   0.0      0.51   2.3e+03       8      26 ..    2371    2389 ..    2369    2392 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.88
                 SHHHHHHHHHHHH CS
        HEAT  13 speVReaAakaLg 25 
                 +p+ Re+A+k+++
  CCE31405.1 220 APSHRETALKNFV 232
                 7999******986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.039
                 HHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgal 27 
                  l+++ls+ps + R  +++ L ++
  CCE31405.1 670 SLVENLSSPSHDLRLVSLELLKQM 693
                 6899****************9997 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.1
                  HHHHHHHHHT-SSHHHHH CS
        HEAT    1 llPlllkllsDpspeVRe 18  
                  llP + +  + +s+ VR+
  CCE31405.1 1511 LLPSIYSGAKEESATVRR 1528
                  799999999*******97 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.064
                  HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAakaLgala 28  
                  +++ l+++++e Re+A  +L+++a
  CCE31405.1 1774 ICHILRSKAWEAREMARDTLVKIA 1797
                  78889***********99999998 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.022
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalaev 30  
                  +lPl+  ++ D++ eV  +A++ L++l++v
  CCE31405.1 2025 FLPLIGDAIVDSEDEVKISAFRLLATLVKV 2054
                  5899999999*****************985 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.023
                  HHHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgal 27  
                  +lPl+  l +D+s + R  A   L ++
  CCE31405.1 2235 FLPLFFVLANDDSEKCRTFASGLLREV 2261
                  69****************998888765 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 0.51
                  HHT-SSHHHHHHHHHHHHH CS
        HEAT    8 llsDpspeVReaAakaLga 26  
                   l+++ p V  aA++ + a
  CCE31405.1 2371 YLRHSQPLVKLAAVRLINA 2389
                  68999*********98875 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.9   8.4e+03      26      73 ..     616     673 ..     605     725 .. 0.55
   2 ?    6.5   0.1    0.0016       7.3      57     158 ..    1137    1262 ..    1097    1264 .. 0.71
   3 ?   -3.2   0.1       1.5   6.7e+03      94     135 ..    1276    1316 ..    1272    1336 .. 0.67
   4 ?    2.6   0.0     0.026   1.2e+02      21      38 ..    1520    1537 ..    1506    1602 .. 0.91
   5 ?    2.7   0.0     0.024   1.1e+02      80     121 ..    1740    1784 ..    1645    1804 .. 0.64
   6 ?   -3.6   0.0       2.1   9.3e+03      24      67 ..    2437    2487 ..    2428    2560 .. 0.51

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.9
     DUF3385  26 sirrevikllGilGALDPykhkqveeraedk..........krreeaaretdlsllmv 73 
                  +r  v +    +G LD y   +  +r+++k          +++++ ++++ +++l+ 
  CCE31405.1 616 LLRAAVPRFARSVGFLDAYLAYERIQRESQKtddapstlhsDENSTMEEDPAIKSLVE 673
                 5666666666677778887764444443332222222222111111222233333333 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0016
     DUF3385   57 krreeaaretdlsll....mvgl............spsneeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkcvp..........fLd 127 
                  k++e+ ++ +dlsll    +  +            ++ + e y+t +i+ +++  + ++ls   ++ v+a+++ f t ++              f +
  CCE31405.1 1137 KEEEDVEKISDLSLLktirT--VgikclmalfqnaQNFQWEAYQTLIIEDVVA-PRLANLSVETTQGVSAMLHLFATWSVLPKAalflapiddvFPQ 1230
                  33333333455555544441..134555666665588889*********9664.578999999*************955433335788999998888 PP

     DUF3385  128 qiipallsvir.tteesnlrefllqqLatLvs 158 
                   ++pa++s+++ + ++ +++ f+l+ L++Lv+
  CCE31405.1 1231 GVLPAIISCVSkEKTKDEVKIFVLNILQNLVK 1262
                  89******998344556899999999999997 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.5
     DUF3385   94 ilkdpslsshhaavveaimnifktlglkcvpfLdqiipalls 135 
                  i+k + l+ + ++++++i++++++ +l+   +L+  + ++ls
  CCE31405.1 1276 IIKSELLEANATETLSTITTVLHSSNLSN-DLLESCVETVLS 1316
                  77788888888888888888888766543.444444444444 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.026
     DUF3385   21 teqsqsirrevikllGil 38  
                  +e+s ++rre ++++G l
  CCE31405.1 1520 KEESATVRREYLRVMGFL 1537
                  5789************87 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.024
     DUF3385   80 eeyypt...vvinaLlrilkdpslsshhaavveaimnifktlglk 121 
                  e  y     vv+ +Ll++l  ++++++ a+v++ i +i+++   +
  CCE31405.1 1740 EVSYRVpvgVVVVKLLKLLPAEQIDQKLAGVLTDICHILRSKAWE 1784
                  33444445699999************************9986555 PP

  == domain 6  score: -3.6 bits;  conditional E-value: 2.1
     DUF3385   24 sqsirrevikllGilGALDPykh.....kqveer......aedkkrreeaaretd 67  
                  ++++  e ++++  lG   P+            +      ++d+k++ee+++ +d
  CCE31405.1 2437 DETLAAELVQVIVFLGTCLPVSAgadgdE----EaegedeEKDEKDTEEEVEVQD 2487
                  56666777777777777777666333321....1222111111122222222222 PP

>> BP28CT  BP28CT (NUC211) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.1   9.6e+03       7      66 ..     835     889 ..     832     911 .. 0.57
   2 ?    9.4   0.0    0.0002      0.89      80     142 ..    1084    1153 ..    1063    1172 .. 0.62
   3 ?   -2.4   0.0      0.81   3.6e+03     133     154 ..    1366    1387 ..    1305    1390 .. 0.75
   4 ?   -4.0   0.1       2.7   1.2e+04     132     156 ..    2310    2334 ..    2300    2349 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH CS
      BP28CT   7 kelfkfflkaldlRreqaskkeeeeidevEesvieafvalvlKLneatFrPlFlklveWa 66 
                 +++++ +l+ +d++++ a+     +i +   s    +++ +    e+  r l  +l+ Wa
  CCE31405.1 835 EKVYDALLSSFDAKQQLAE-----SIPATARSRALKVLHAIPAVAEKRSRQLVPHLLCWA 889
                 5677888888888866554.....333333333333444444555555555555566666 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0002
                  -HHHHHHHHHHHHH--------TTHHHHHHHHHHHHH--.......-------HH.................HHHH CS
      BP28CT   80 eRlitfykllnklaekLkslftsYasyllenavelLkal.......nekseeskekkkkk......eekkveLlrl 142 
                   ++i f +++ +l ++L + + +Y+  l+++++ +L  +       ++++ee+      k      + ++  Ll++
  CCE31405.1 1084 RKQIGFLNMVSSLISELGTNVEPYMDVLVNSVLYCLVYAsrqlsgsASSDEEE------KeeedveKISDLSLLKT 1153
                  78999*******************************55533333321111111......12234443333333333 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.81
                  ......HHHHHHHHHHHHHHHH CS
      BP28CT  133 eekkveLlrlvlstLtkcflhD 154 
                    ++  Ll++v +tL++ f++ 
  CCE31405.1 1366 AANDQVLLEQVYKTLSSLFSYF 1387
                  566778999*******999985 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 2.7
                  .......HHHHHHHHHHHHHHHHGG CS
      BP28CT  132 keekkveLlrlvlstLtkcflhDqd 156 
                  ++++  +Ll+ v +tL+     D+d
  CCE31405.1 2310 NKKDGRLLLQKVADTLKADSISDTD 2334
                  3445566666666666655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2666 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1099  (0.0612973); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.41u 0.30s 00:00:01.71 Elapsed: 00:00:00.47
# Mc/sec: 17145.84
//
Query:       CCE31406.1  [L=183]
Description: uncharacterized protein CPUR_05259 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-27   93.3   0.7    8.5e-27   92.9   0.7    1.2  1  zf-DNL         DNL zinc finger
  ------ inclusion threshold ------
      0.091   12.8   0.1       0.12   12.4   0.1    1.2  1  HypA           Hydrogenase/urease nickel incorporation, metal
      0.099   12.4   1.5        0.2   11.4   1.5    1.5  1  zf-CSL         CSL zinc finger
       0.47   10.8   6.7       0.34   11.3   4.6    1.9  2  zf-RING_2      Ring finger domain


Domain annotation for each model (and alignments):
>> zf-DNL  DNL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.7   1.9e-30   8.5e-27       1      63 [.      89     151 ..      89     152 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 1.9e-30
      zf-DNL   1 kltftCkaCetrsskeiskkaYekGvVivqCpgCknrHliaDnLgwfedkkktiedilkekge 63 
                 +++ftC  C++rs++++sk++Y++G  +++Cp+C+nrH+i+D+L++f d+k t+ed+++ekg+
  CCE31406.1  89 QISFTCVPCGHRSHHNVSKQGYHRGSTLITCPSCRNRHVISDHLNIFGDRKITVEDLMREKGQ 151
                 699**********************************************************96 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.7e-05      0.12      51      97 ..      70     127 ..      52     145 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.7e-05
                 HHCC.TTTT-E..EEEEEE--EEEETTTS-EEECHHHHH.........S-TTTSSS-E CS
        HypA  51 laegtvlegae..LeieevpvkvrCreCgkefeleekal.........rCpkCgsadv 97 
                 ++ + + eg++  ++ e  +++++C  Cg++ +++ ++          +Cp+C +++v
  CCE31406.1  70 ANGEAISEGKRppVKPECYQISFTCVPCGHRSHHNVSKQgyhrgstliTCPSCRNRHV 127
                 5555555554433556677899*********99775322457899999*****99875 PP

>> zf-CSL  CSL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.5   4.4e-05       0.2      19      50 ..      92     122 ..      83     123 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.4e-05
                 EEE.TTSSE..EEEEHHHHHTT....--EEEETTS CS
      zf-CSL  19 ypC.RCgde..FelteedleegaegaevvvqCssC 50 
                  +C +Cg +   +++++  ++g    ++++ C+sC
  CCE31406.1  92 FTCvPCGHRshHNVSKQGYHRG----STLITCPSC 122
                 68********9**********9....********* PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.85   3.8e+03      36      42 ..      21      27 ..      12      27 .. 0.56
   2 ?   11.3   4.6   7.6e-05      0.34      17      44 .]      93     123 ..      77     123 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.85
   zf-RING_2 36 ssstCPl 42
                + s+CP+
  CCE31406.1 21 TASSCPF 27
                2334996 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 7.6e-05
   zf-RING_2  17 lllpCgHvfhreClerwlrssst...CPlCr 44 
                 +++pCgH  h++  ++  ++ st   CP Cr
  CCE31406.1  93 TCVPCGHRSHHNVSKQGYHRGSTlitCPSCR 123
                 3459****999999996666666899****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1381.19
//
Query:       CCE31407.1  [L=486]
Description: uncharacterized protein CPUR_05260 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0036   17.6   0.0       0.33   11.3   0.0    3.3  3  TPR_12    Tetratricopeptide repeat
     0.0076   17.0   1.0      0.031   15.1   0.3    2.5  3  TPR_14    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.093   13.4   0.1       0.22   12.2   0.1    1.6  1  TPR_16    Tetratricopeptide repeat
       0.21   11.5   0.5         22    5.1   0.0    3.3  4  TPR_1     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.28   1.2e+03      11      33 ..      12      34 ..       9      62 .. 0.59
   2 !   11.3   0.0   7.4e-05      0.33      25      76 ..      87     138 ..      85     139 .. 0.92
   3 ?    1.4   0.0     0.089     4e+02       7      35 ..     145     173 ..     142     182 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.28
      TPR_12 11 avlrrlgrydeAlellekaleia 33
                ++ +r  r deA ++  + ++ +
  CCE31407.1 12 EMIARNRRVDEAKKHDLALMNFY 34
                55555555555555544444333 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 7.4e-05
      TPR_12  25 llekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +++ +l +++    +d+   +++l + + +++a+g+++ A +  e  l++a+
  CCE31407.1  87 CCHCVLSRYSGNGKCDNVHHLEALDGRAATFEAMGEFDLAKKQAEWILEMAP 138
                 678889999999999999*******************************997 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.089
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarr 35 
                  +l+++ + +++ d A e++ + +e++++
  CCE31407.1 145 LRLGNIAQLQQNDDFAWEIYTTGIEAVEE 173
                 35666666666666666666665555555 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.3     7e-06     0.031       2      42 ..     108     148 ..     107     150 .. 0.94
   2 ?   -4.0   0.0         4   1.8e+04      17      27 ..     310     320 ..     310     323 .. 0.78
   3 ?   -2.7   0.0       3.4   1.5e+04      18      27 ..     444     453 ..     436     462 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 eal  +a+ ++a G++d A + ++++l+ aP+ ++ +l+l+
  CCE31407.1 108 EALDGRAATFEAMGEFDLAKKQAEWILEMAPQLPDGYLRLG 148
                 78999********************************9998 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4
      TPR_14  17 pdeAiallrra 27 
                 p++A++ll +a
  CCE31407.1 310 PEGARNLLSKA 320
                 67899999887 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.4
      TPR_14  18 deAiallrra 27 
                 +eA a lr+a
  CCE31407.1 444 REACAQLRQA 453
                 5677777776 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1     5e-05      0.22       6      45 ..     116     152 ..     112     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5e-05
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaal 45 
                  + + g++d A +++e+ l+++   P+ ++ +l lg++a 
  CCE31407.1 116 TFEAMGEFDLAKKQAEWILEMA---PQLPDGYLRLGNIAQ 152
                 56789*****************...***********9984 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.56   2.5e+03      15      28 ..      24      37 ..      22      40 .. 0.83
   2 ?    5.1   0.0    0.0049        22       7      33 ..     113     139 ..     112     140 .. 0.88
   3 ?    2.5   0.0     0.031   1.4e+02       2      18 ..     142     158 ..     141     169 .. 0.84
   4 ?   -3.2   0.0         2     9e+03       4      12 ..     253     261 ..     252     262 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.56
                T-HHHHHHHHHHHH CS
       TPR_1 15 gkydeAleyyekAL 28
                +k+d Al  +  A+
  CCE31407.1 24 KKHDLALMNFYMAI 37
                79999999999888 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0049
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 +++++  +g++d A +  e  Le  P+
  CCE31407.1 113 RAATFEAMGEFDLAKKQAEWILEMAPQ 139
                 8999***********999998888885 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.031
                 HHHHHHHHHHHHTT-HH CS
       TPR_1   2 kalynlGnayfklgkyd 18 
                 + + +lGn+ + +++ d
  CCE31407.1 142 DGYLRLGNIAQLQQNDD 158
                 789*******9998865 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 2
                 HHHHHHHHH CS
       TPR_1   4 lynlGnayf 12 
                 + n+Gn ++
  CCE31407.1 253 CINRGNSLQ 261
                 679**9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3694.53
//
Query:       CCE31408.1  [L=464]
Description: uncharacterized protein CPUR_05261 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.041   14.2   0.0        4.2    7.7   0.0    3.2  3  TPR_12    Tetratricopeptide repeat
       0.28   12.1   2.3        1.4    9.9   0.2    2.8  3  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.068   6.1e+02      17      30 ..      15      28 ..       1      45 [. 0.63
   2 ?    7.7   0.0   0.00047       4.2      40      76 ..      79     115 ..      75     116 .. 0.89
   3 ?    0.9   0.0     0.065   5.9e+02      49      75 ..     122     148 ..     119     158 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.068
      TPR_12 17 grydeAlellekal 30
                +++d Al ++ ka+
  CCE31408.1 15 KKHDLALMNFYKAI 28
                34444555554444 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00047
      TPR_12  40 dhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 d+   +++l + + +++a+g+++ A +  e  +++a+
  CCE31408.1  79 DNVHHLEALDGRAATFEAMGKFDLAKKQAEWIMEMAP 115
                 5566789************************999987 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.065
      TPR_12  49 rnLgrlyralgryeeAlelleealaia 75 
                   Lg + +++ + + A+e+++  +++ 
  CCE31408.1 122 LRLGSIAQLQQNDDFAWEIYTTGIEAV 148
                 556777776667777777776665554 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00016       1.4       2      42 ..      85     125 ..      84     127 .. 0.94
   2 ?    0.7   0.0      0.14   1.3e+03      17      30 ..     287     300 ..     286     304 .. 0.89
   3 ?   -3.1   0.1         2   1.8e+04      18      27 ..     422     431 ..     421     438 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00016
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 eal  +a+ ++a G++d A + ++++ + aP+ ++ +l+l+
  CCE31408.1  85 EALDGRAATFEAMGKFDLAKKQAEWIMEMAPQLPDGYLRLG 125
                 78999*******************************99998 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
      TPR_14  17 pdeAiallrralal 30 
                 pd+A++ll +a+++
  CCE31408.1 287 PDGARNLLSKAIQA 300
                 89*********985 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2
      TPR_14  18 deAiallrra 27 
                 +eA a lr+a
  CCE31408.1 422 REACAQLRQA 431
                 5777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3492.72
//
Query:       CCE31409.1  [L=193]
Description: uncharacterized protein CPUR_05262 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-12   47.1   0.5      5e-12   46.8   0.5    1.1  1  CAP       Cysteine-rich secretory protein family


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.5   2.8e-16     5e-12       1      91 [.      28     121 ..      28     138 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 2.8e-16
                 HHHHHHHHHHTT----EE-HHHHHHHHHHHHHHHHH..T---S-GGG--HHHHHHTT-T..EEEEEES--CCCHHHHHHTSHH........... CS
         CAP   1 leahNeyRaaaglppLkwdatLekaAqdhardcaash.sdsssspeggdllkyaenagk..eniaaaseaaedavdsWysepgtynkgketegs 91 
                 l+++N+ R+a+g+p L+wd  Le+ Aq +a+++a+ + ++++ ++ +++  + + ++ +  +++aa+++ ++  +++W+s++ +y+    t+g 
  CCE31409.1  28 LAMVNQARQAHGVPGLAWDTGLEAYAQFWANEMASGRsRFEHAQGPNRPSQGENLYEQSagQCDAAYDNPLQTGMHAWLSQEHFYTGQPITTGH 121
                 789******************************9988855555555555555555555566799**************9999988766665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1517.81
//
Query:       CCE31410.1  [L=848]
Description: related to CWC22-involved in mRNA splicing [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-24   85.2   0.0    1.1e-23   83.4   0.0    2.0  2  MA3          MA3 domain
    1.5e-10   41.1   0.5    3.4e-10   39.9   0.2    1.8  2  MIF4G        MIF4G domain


Domain annotation for each model (and alignments):
>> MA3  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.3   1.2e+04      48      64 ..      86     103 ..      82     108 .. 0.75
   2 !   83.4   0.0   1.2e-27   1.1e-23       1     110 [.     389     492 ..     389     495 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.3
                 S..SS--HHHHHHHHHHH CS
         MA3  48 e.sktyneyygllleklc 64 
                 + sk+y++++++ l+k +
  CCE31410.1  86 KtSKEYQRMAWEALKKSI 103
                 447889999999888876 PP

  == domain 2  score: 83.4 bits;  conditional E-value: 1.2e-27
                 HHHHHHHHHHSSS...SHHHHHHHHHHTT--.TTHHHHHHHHHHHHHHS.SS--HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHGGGGS-HH...HHHH CS
         MA3   1 lrrkifliieeylssgdyeeavsklekLklp.kqeheivkillecaleesktyneyygllleklceknlilkkqfekgfwdvlesledleldipeairn 98 
                 lrr i+l+i++++   d eeav+kl+k++lp  qe+e++++++ec+ +e kty ++ gl+ e++ + n+++ + fe++f +++++++++e +   ++rn
  CCE31410.1 389 LRRTIYLTIMSSA---DPEEAVHKLMKINLPaGQEPELPSMIVECCSQE-KTYTKFFGLIGERFAKINRLWCDLFEQAFVKYYDTIHRYENN---KLRN 480
                 69***********...*********************************.******************************************...**** PP

                 HHHHHHHHHHTT CS
         MA3  99 laefvarlised 110
                 +a+++++++  d
  CCE31410.1 481 IAQLFGHMLGVD 492
                 *******98655 PP

>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.2   3.7e-14   3.4e-10       2     212 .]     101     283 ..     100     283 .. 0.96
   2 ?   -2.9   0.0      0.48   4.3e+03      20      49 ..     498     527 ..     480     533 .. 0.78

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 3.7e-14
                 HHHHHHHHCHTTTTHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHH CS
       MIF4G   2 kkvkgilnklskenfevlikqllklamdddknelkevielifekaveepsfsplyarlcgklnsrfqqnFrikllnklqeefekryeleneleenedgn 100
                 k ++g++nk+   n+++++ +l   +       +  + ++i++ +  +  f p ya +++ +n++++  +++ l+ +l+ +f+k           ++ +
  CCE31410.1 101 KSINGLINKVNTANIKHIVPELFGENLIR---GRGLFCRSIMKAQAASLPFTPIYAAMAAIVNTKLP-LVGELLIMRLIMQFRK---------GFKRND 186
                 5689**********************996...9**********************************.****************.........899999 PP

                 HHHHHHHHHHHHHHHHTTSSEHHHHHHHHHHHHHGGCCCCSCCHSCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHCSSSSHHHH CS
       MIF4G 101 rrrrlglvrflgelfklkmltskilldclkellssltketaddppqdleeieilltllttigktlennekakkeldqffkriqkiledatrqelssrir 199
                 ++ +l+  +fl  l ++++ ++     +l  ll + t+          + +ei++ +++ +g++le  + +++     f+++++il +   + +++r++
  CCE31410.1 187 KSVCLSSTTFLAHLINQQVQHEMLAGQILLLLLHKPTD----------DGVEIAVGFCREVGQYLE--DMQPSISVAVFDQFRNILHE---ADIDKRTQ 270
                 999*******************8888899999999999..........9*****************..*******************9...9******* PP

                 HHHHHHHHHHHTT CS
       MIF4G 200 fmlkdlielkknk 212
                 +m++ l++++k+k
  CCE31410.1 271 YMVEVLFQVRKDK 283
                 **********987 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.48
                 HHHHHHHHHCSCHHHHHHHHHHHHHHHHHC CS
       MIF4G  20 ikqllklamdddknelkevielifekavee 49 
                 + +++ l+ d++ +++  +i+++f+  vee
  CCE31410.1 498 CLSVIHLNEDETTSSSRIFIKILFQSIVEE 527
                 566777777788899999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (848 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      713  (0.039768); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.43
# Mc/sec: 5979.13
//
Query:       CCE31411.1  [L=136]
Description: uncharacterized protein CPUR_05264 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-09   38.0  30.6    2.3e-09   37.0  30.6    1.5  1  Ifi-6-16  Interferon-induced 6-16 family


Domain annotation for each model (and alignments):
>> Ifi-6-16  Interferon-induced 6-16 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0  30.6   1.3e-13   2.3e-09       4      75 ..      17      90 ..      14      94 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.3e-13
    Ifi-6-16  4 vvavvaaPvv.....lsalGFtaaGiaagSlAAkmmSaaAianGGgVaaGslvAvlQSaGaaGlsaaa..tallgsvGa 75
                +v v+a+P++     l+ lGF+a G +agS+AA ++S +     G+VaaGsl+A+lQSaG+ G+++a   +a+ g++Ga
  CCE31411.1 17 GVLVAAVPALavapvLGGLGFGALGPVAGSAAAGIQSGI-----GNVAAGSLFATLQSAGMGGAGIAVvnAAVSGAAGA 90
                556666666555566************************.....*****************988776521333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1047.94
//
Query:       CCE31412.1  [L=130]
Description: uncharacterized protein CPUR_05265 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-08   32.3  30.6    1.2e-07   31.5  30.5    1.4  1  Ifi-6-16  Interferon-induced 6-16 family


Domain annotation for each model (and alignments):
>> Ifi-6-16  Interferon-induced 6-16 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5  30.5   6.6e-12   1.2e-07       3      77 ..      28     102 ..      26     106 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 6.6e-12
    Ifi-6-16   3 gvvavvaaPvv.....lsalGFtaaGiaagSlAAkmmSaaAianGGgVaaGslvAvlQSaGaaGlsaaatallgsvGaav 77 
                 ++v v+aaP +     l+ lGF+  G +a S+AA ++S +     G+VaaGsl+A+lQSaG+ G++++   ++ s +aa+
  CCE31412.1  28 AGVLVAAAPGLavvpaLGGLGFGGLGPVAASAAAGIQSGI-----GNVAAGSLFATLQSAGMGGAGTVMVNAAVSGAAAA 102
                 67778888866677889***********************.....*********************99755555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1040.28
//
Query:       CCE31413.1  [L=491]
Description: uncharacterized protein CPUR_05266 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0017   18.6   0.0       0.12   12.6   0.0    3.1  3  TPR_12    Tetratricopeptide repeat
     0.0076   17.0   0.3      0.077   13.9   0.2    2.4  2  TPR_14    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.016   15.0   0.3       0.26   11.2   0.1    2.8  3  TPR_1     Tetratricopeptide repeat
       0.18   12.4   0.1       0.38   11.4   0.1    1.5  1  TPR_16    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.27   1.2e+03       8      34 ..       9      35 ..       2      41 .. 0.81
   2 !   12.6   0.0   2.8e-05      0.12      25      76 ..      87     138 ..      85     139 .. 0.92
   3 ?    1.3   0.0     0.098   4.4e+02      48      75 ..     144     171 ..     142     181 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.27
      TPR_12  8 nlaavlrrlgrydeAlellekaleiar 34
                ++a++ +r  r deA ++  + ++ ++
  CCE31413.1  9 RMAEMIARNRRIDEAKKHDLALMNSYE 35
                589999999999999999888777665 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.8e-05
      TPR_12  25 llekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +++ +l +++    +d+   +++l++ + +++a+g+++ A +  e  l++a+
  CCE31413.1  87 CCHCVLSRYSGNGKCDNVHHLEALNGRAATFEAMGEFDLAKKQAEWILEMAP 138
                 67888999999999999********************************997 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.098
      TPR_12  48 lrnLgrlyralgryeeAlelleealaia 75 
                 +  Lg + +++++ + A+e+++  +++ 
  CCE31413.1 144 YLRLGSIAQLQKNDDFAWEIYTTGIEAV 171
                 5567888888888888888887766654 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   1.7e-05     0.077       2      43 ..     108     149 ..     107     150 .. 0.92
   2 ?   -0.1   0.0      0.53   2.4e+03      17      30 ..     313     326 ..     312     330 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 eal  +a+ ++a G++d A + ++++l+ aP+ ++ +l+l+ 
  CCE31413.1 108 EALNGRAATFEAMGEFDLAKKQAEWILEMAPQLPDGYLRLGS 149
                 56777999******************************9985 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.53
      TPR_14  17 pdeAiallrralal 30 
                 pd+A++ll +a+++
  CCE31413.1 313 PDGARNLLYKAIQT 326
                 89*********986 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   5.9e-05      0.26       2      33 ..     108     139 ..     107     140 .. 0.91
   2 ?    0.6   0.0      0.13   5.9e+02       2      18 ..     142     158 ..     141     168 .. 0.87
   3 ?   -3.2   0.0         2   9.1e+03       4      12 ..     256     264 ..     255     265 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.9e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 +al+++++++  +g++d A +  e  Le  P+
  CCE31413.1 108 EALNGRAATFEAMGEFDLAKKQAEWILEMAPQ 139
                 79******************999998888885 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHTT-HH CS
       TPR_1   2 kalynlGnayfklgkyd 18 
                 + + +lG + + +++ d
  CCE31413.1 142 DGYLRLGSIAQLQKNDD 158
                 789*********99865 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2
                 HHHHHHHHH CS
       TPR_1   4 lynlGnayf 12 
                 + n+Gn ++
  CCE31413.1 256 CINRGNSLR 264
                 679***875 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   8.5e-05      0.38       6      47 ..     116     154 ..     112     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.5e-05
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrq 47 
                  + + g++d A +++e+ l+++   P+ ++ +l lg +a  q
  CCE31413.1 116 TFEAMGEFDLAKKQAEWILEMA---PQLPDGYLRLGSIAQLQ 154
                 56789*****************...***********998555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 4036.86
//
Query:       CCE31414.1  [L=101]
Description: uncharacterized protein CPUR_05267 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0026   17.6   5.0     0.0046   16.9   5.0    1.4  1  Ifi-6-16  Interferon-induced 6-16 family


Domain annotation for each model (and alignments):
>> Ifi-6-16  Interferon-induced 6-16 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   5.0   2.5e-07    0.0046       9      48 ..      35      70 ..      23      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.5e-07
    Ifi-6-16  9 aaPvv.lsalGFtaaGiaagSlAAkmmSaaAianGGgVaaG 48
                 aPv  l+ lGF+  G  agS+AA+++S +     G+V+aG
  CCE31414.1 35 IAPVSmLRSLGFGRLGPIAGSAAANIQSGI-----GNVTAG 70
                4555459**********************9.....999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 860.96
//
Query:       CCE31415.1  [L=85]
Description: uncharacterized protein CPUR_05268 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-13   49.2   1.6    4.5e-13   48.9   1.6    1.1  1  Ifi-6-16  Interferon-induced 6-16 family


Domain annotation for each model (and alignments):
>> Ifi-6-16  Interferon-induced 6-16 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   1.6   2.5e-17   4.5e-13       6      64 ..      21      77 ..      14      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2.5e-17
    Ifi-6-16  6 avvaaPvv...lsalGFtaaGiaagSlAAkmmSaaAianGGgVaaGslvAvlQSaGaaGlsa 64
                a  +aP +   l+ +GF++ G  agS AA+m+S +     G+V aGsl+A lQSaG+ G +a
  CCE31415.1 21 AQFTAPSMlesLNRMGFGSLGPIAGSPAANMQSDI-----GNVVAGSLFARLQSAGMGGKGA 77
                45567777677999*********************.....******************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       173  (0.00964917); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 708.13
//
Query:       CCE31416.1  [L=153]
Description: uncharacterized protein CPUR_05269 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-06   25.8  23.0    2.2e-05   24.3  22.5    2.1  2  Ifi-6-16  Interferon-induced 6-16 family


Domain annotation for each model (and alignments):
>> Ifi-6-16  Interferon-induced 6-16 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3     0.037   6.7e+02      39      48 ..      14      23 ..       8      28 .. 0.51
   2 !   24.3  22.5   1.2e-09   2.2e-05       5      74 ..      23      87 ..      13     108 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.037
    Ifi-6-16 39 ianGGgVaaG 48
                + +GG Va  
  CCE31416.1 14 VGTGGLVAVP 23
                3445555554 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 1.2e-09
    Ifi-6-16  5 vavvaaPvvlsalGFtaaGiaagSlAAkmmSaaAianGGgVaaGslvAvlQSaGaaGlsaaa.tallgsvG 74
                   +aaP+ l+ lGF++ G  ag++AA ++S++     G+++a sl+A+lQSaG+ G++a+a  +ll+++G
  CCE31416.1 23 PGLIAAPM-LGLLGFGSLGPGAGTVAALIQSLI-----GNITAASLFAMLQSAGMGGAGALAlGTLLSGFG 87
                33445554.7***********************.....********************9987334455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1193.07
//
Query:       CCE31417.1  [L=580]
Description: related to tRNA dihydrouridine synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-56  191.7   0.0    2.5e-56  191.0   0.0    1.3  1  Dus       Dihydrouridine synthase (Dus)


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.0   0.0   1.4e-60   2.5e-56       1     224 [.      43     289 ..      43     330 .. 0.92

  Alignments for each domain:
  == domain 1  score: 191.0 bits;  conditional E-value: 1.4e-60
                 EE---TTTS-HHHHHHHHHTT-S.....SEEEEEEEE-SSS---HHHHHHH-GGGGGT.................SCEEEEEE-S-HHHHHHHHHHHHH CS
         Dus   1 llaPmagvtdlpfRelvrefgat.....aLvvtemvtakaivreekvrirmlseeeee.................tplavQlggsdpallaeaAklvad 77 
                 +laPm+++++ ++R l r f ++      L++t+m++a+ + +  ++r   +++ + +                 +pl vQ++++dp+ l+ aA+ va+
  CCE31417.1  43 VLAPMVDQSEFAWRMLTRSFLSDeekknMLAYTPMLHARLFSQTPNYRKVHFQAVKPDsdsdsnepwldgnpaldRPLFVQFCANDPEALLSAAQQVAP 141
                 59****************99777677779**********9998877776666654444456999*********************************** PP

                 TT-SCEEEEESSTTEEETTEEEGGGGGGSHHHHHHHHHHHHCCSSS-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESSECCCTT-C..G--CHH CS
         Dus  78 lgadeIdlNvGCPskkvtrggaGaaLlrkpdlvaqivkavvkaveiPvtvkirigiddeeenalelakiveaaGaqaltvHgRtraqnyeg..tadwea 174
                  ++d++dlN+GCP+  + +g++Ga+L +++dl+ ++v+ ++k ++iPvt+kiri   +++e++l +a+ v +aGa  ltvHgR r q+ +    adw+ 
  CCE31417.1 142 -YCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFRLVNILHKELPIPVTAKIRIL--ETKEDTLAYAQNVLKAGASILTVHGRRRDQKGHLtgLADWKM 237
                 .***************************************************987..56999*********************99999876669***** PP

                 HHHHHHH-S..S-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHH CS
         Dus 175 Ikevkqavs..ipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfa 224
                  + ++++++  ++++aNG+I + +d++a+l+ tGadg+m ++g+l++P+lfa
  CCE31417.1 238 LRFLRDSLPpeTVLFANGNILQGSDMEACLAATGADGIMSAEGNLSDPALFA 289
                 ***************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4047.50
//
Query:       CCE31418.1  [L=753]
Description: uncharacterized protein CPUR_05271 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 5432.28
//
Query:       CCE31419.1  [L=110]
Description: uncharacterized protein CPUR_05272 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 879.54
//
Query:       CCE31420.1  [L=1741]
Description: related to 26S proteasome subunit YTA7 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-50  169.7   0.0    2.6e-42  144.4   0.0    2.7  2  AAA              ATPase family associated with various cellul
    4.2e-09   36.1   0.3    1.3e-08   34.5   0.0    2.0  1  AAA_lid_3        AAA+ lid domain
    2.5e-06   27.3   0.0    1.7e-05   24.6   0.0    2.1  2  IstB_IS21        IstB-like ATP binding protein
    1.8e-05   24.9   0.0    5.3e-05   23.4   0.0    1.7  1  AAA_2            AAA domain (Cdc48 subfamily)
    9.8e-05   22.8   5.8    0.00075   19.9   0.2    3.6  2  AAA_16           AAA ATPase domain
     0.0022   18.2   0.5      0.062   13.6   0.1    3.1  2  AAA_22           AAA domain
     0.0032   17.5   0.0      0.013   15.5   0.0    2.1  1  AAA_5            AAA domain (dynein-related subfamily)
      0.005   17.0   0.5      0.035   14.3   0.0    2.6  2  AAA_33           AAA domain
  ------ inclusion threshold ------
       0.01   15.6   0.0      0.044   13.5   0.0    2.0  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.011   16.2   0.0      0.038   14.4   0.0    2.0  2  RNA_helicase     RNA helicase
      0.011   16.3   0.0      0.039   14.5   0.0    2.0  1  AAA_18           AAA domain
      0.013   14.8   0.0      0.023   13.9   0.0    1.3  1  TIP49            TIP49 P-loop domain
      0.058   12.8   0.2       0.17   11.2   0.2    1.7  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.061   12.4   0.0       0.22   10.6   0.0    1.8  2  Parvo_NS1        Parvovirus non-structural protein NS1
      0.081   13.0   0.0       0.18   11.8   0.0    1.6  1  AAA_14           AAA domain
       0.11   12.0   0.0       0.28   10.7   0.0    1.6  2  AAA_7            P-loop containing dynein motor region
       0.11   12.2   0.0        3.5    7.3   0.0    2.8  3  Sigma54_activat  Sigma-54 interaction domain
       0.11   12.6   0.0        1.6    8.8   0.0    2.3  2  Sigma54_activ_2  Sigma-54 interaction domain
       0.17   11.8   0.0       0.38   10.7   0.0    1.6  1  NACHT            NACHT domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.4   0.0   2.7e-45   2.6e-42       1     132 []     612     747 ..     612     747 .. 0.95
   2 !   22.6   0.0   1.2e-07   0.00012       2      74 ..     915     986 ..     914    1029 .. 0.80

  Alignments for each domain:
  == domain 1  score: 144.4 bits;  conditional E-value: 2.7e-45
                 EEEESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel.....gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteld 94 
                 vl++GppGtGKTlla+a+a+++     +++f+  +g++ lsk+vge+ek++r lf+ea++ + psi+f+DEid la+ rs+++++ + ++v++Ll+ +d
  CCE31420.1 612 VLFHGPPGTGKTLLARALANSVgsggrKISFYMRKGADALSKWVGEAEKQLRLLFEEARKTQ-PSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMD 709
                 79*******************955544599*******************************9.************************************ PP

                 HTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  95 gvkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 g++ + ++vivigatnrpd++dpal+r gRfdr+++++l
  CCE31420.1 710 GMDGR-GQVIVIGATNRPDNIDPALRRpGRFDREFYFPL 747
                 ****7.56****************************985 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 1.2e-07
                 EEESSTTSSHHHHHHHHHHHH.THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA   2 llyGppGtGKTllakavakel.gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr 74 
                 l+yG  G+G  ++a+a+ + l gv++ +++++ ll +   ++e+ i  lf+e+++++ ps++ i +ida   + 
  CCE31420.1 915 LVYGSHGMGQAYIASAILHYLeGVHVQNFDLPALLAD-GRAMEQVIVSLFAEVRRHK-PSVIYIPNIDAWYATL 986
                 89*******************66************44.68899999*********98.**********987776 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   1.4e-11   1.3e-08       6      39 ..     773     806 ..     771     814 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.4e-11
   AAA_lid_3   6 eLAerTeGySGADlaalcreAallAlrrgikeit 39 
                  LAe+T+Gy GADl alc eAal+ ++r+ ++i 
  CCE31420.1 773 SLAEKTKGYGGADLRALCTEAALNSIQRTYPQIY 806
                 59**************************988654 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.8e-08   1.7e-05      38     130 ..     600     696 ..     589     706 .. 0.86
   2 ?   -0.6   0.0         1   9.4e+02      50      69 ..     914     933 ..     900     954 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.8e-08
   IstB_IS21  38 LatlsfiekkenivllGpsGvGKshlaialgveavraglsvlfvr...vedLveelkrarrdgklaralkrllkvdllilDdl.gllpldqaeaell 130
                 L t  +++   ++++ Gp+G+GK+ la al+ +    g +++f+    +++L + +  a+++ +l  + +r ++++++  D++ gl p+ + ++e++
  CCE31420.1 600 LFTKFHVTPPRGVLFHGPPGTGKTLLARALANSVGSGGRKISFYMrkgADALSKWVGEAEKQLRLLFEEARKTQPSIIFFDEIdGLAPVRSSKQEQI 696
                 55566677778999***************************99853446789999***************************978888877776665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1
   IstB_IS21  50 ivllGpsGvGKshlaialgv 69 
                 +++ G  G+G +++a a+ +
  CCE31420.1 914 FLVYGSHGMGQAYIASAILH 933
                 6899************9865 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   5.6e-08   5.3e-05       6     105 ..     612     710 ..     608     716 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 5.6e-08
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS...EEEEETGGG-------------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKihpkessgadvSregVqrdLLq 101
                 +l+ gp g+Gkt+la+ala+     +  + i + +++ +   ++++ v + + +     + + +    i+++DEid  +p +ss+++  +  ++  LL 
  CCE31420.1 612 VLFHGPPGTGKTLLARALANSVG--SGGRKISFYMRKGAD--ALSKWVGEAEKQLRLLFEEARKTqpsIIFFDEIDGLAPVRSSKQEQIHASIVSTLLA 706
                 689******************97..456667777887777..77788888777777776666666777*************99999999999******* PP

                 HHH- CS
       AAA_2 102 ileg 105
                 +++g
  CCE31420.1 707 LMDG 710
                 **98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2     8e-07   0.00075      24      94 ..     609     674 ..     600     720 .. 0.60
   2 ?    3.7   0.0     0.076        71      13      82 ..     901     967 ..     895    1041 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 8e-07
      AAA_16  24 pelvllsGesGvGKsslvrellralekd..ggif.lrgkcdqlesaipysalaqalareellrqlldeaesael 94 
                 p+ vl++G++G+GK+ l+r+l++++     ++ f +r  +d l      s ++  + + + lr l +ea+++++
  CCE31420.1 609 PRGVLFHGPPGTGKTLLARALANSVGSGgrKISFyMRKGADAL------SKWVGEA-E-KQLRLLFEEARKTQP 674
                 489*******************987766333333455555555......5566655.3.444555555444444 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.076
      AAA_16  13 lsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql.esaipysa.laqalareell 82 
                 ++ +++ r  r +  l++G  G+G   ++ ++l++le  g+++ + +   l   ++++ + +++++ + e+ 
  CCE31420.1 901 QQEFDQSRIFR-PRFLVYGSHGMGQAYIASAILHYLE--GVHVQNFDLPALlADGRAMEQvIVSLF-A-EVR 967
                 45555555555.4678*****************8888..466666665555444444444344444.3.344 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         7   6.6e+03      31      70 ..     127     170 ..     121     200 .. 0.74
   2 !   13.6   0.1   6.5e-05     0.062       9      30 ..     613     634 ..     608     728 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7
      AAA_22  31 eeakaee....erpevvfvtlpsstsskdllrellralglelka 70 
                 +++kae+      +++v+ ++p+s++  +++r+  ra + ++++
  CCE31420.1 127 AVPKAEQpvgrSTRRLVKLKVPQSSTTPSIRRRATRASTADAEE 170
                 56666667776778888999999999999999999888877766 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.5e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqld 30 
                 + +G++GtGKT+l+r l+++  
  CCE31420.1 613 LFHGPPGTGKTLLARALANSVG 634
                 689**************99874 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-05     0.013       2     135 ..     612     734 ..     611     736 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrlllee 98 
                 vl  GppGtgK+ la+ la  +++    + ++ +  ++ l  ++    g+++ +   l ++ar  +++i+++DE++ + +   ++  ++       l  
  CCE31420.1 612 VLFHGPPGTGKTLLARALANSVGSGGRKISFYMRKGADAL-SKWV---GEAEKQLRLLFEEARktQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLA 706
                 8999******************666666666555555555.4555...578888888999999888999999999976654444443333333333333 PP

                 SSSEEE---......-EEEEEESS--.-TT-TTHHHH CS
       AAA_5  99 ggelvkaknddllerfrviatanpldrslnelspalr 135
                 +   ++ + +     + vi+++n++d    +++palr
  CCE31420.1 707 LMDGMDGRGQ-----VIVIGATNRPD----NIDPALR 734
                 3333333322.....77777777777....6677666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.7e-05     0.035       2      24 ..     612     634 ..     612     724 .. 0.85
   2 ?   -1.2   0.2       2.2   2.1e+03     101     133 ..    1245    1276 ..    1213    1284 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.7e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg 24 
                 vl++G+pG+GK+ la+ l++  g
  CCE31420.1 612 VLFHGPPGTGKTLLARALANSVG 634
                 79***************997655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.2
      AAA_33  101 ivvvetdeetlkeRlakRaangddrsevpeeal 133 
                    + ++d++ l++R  +Raa+  ++ e +++a+
  CCE31420.1 1245 HNFSSVDWDGLHRRQVQRAAQV-AEKERKRKAM 1276
                  5566899999*********974.3345555555 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.7e-05     0.044      35      65 ..     611     641 ..     602     693 .. 0.80
   2 ?   -2.4   0.0       3.8   3.6e+03      36      69 ..     914     948 ..     912     969 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.7e-05
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkits 65 
                  vl++GpPG Gkt la+ +a+ +g+  +  s
  CCE31420.1 611 GVLFHGPPGTGKTLLARALANSVGSGGRKIS 641
                 59********************998766655 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.8
      RuvB_N  36 vllyGpPGlGkttlakiiakel.gvklkitsgPvl 69 
                  l+yG+ G+G++ +a+ i + l gv+++    P+l
  CCE31420.1 914 FLVYGSHGMGQAYIASAILHYLeGVHVQNFDLPAL 948
                 5899********99988777662466666666655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     4e-05     0.038       1      41 [.     612     649 ..     612     682 .. 0.78
   2 ?   -3.0   0.0       9.9   9.3e+03       2      22 ..     915     935 ..     914     941 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnped 41 
                   ++++Gp+g+GK++la+ La+++       +k s+y+r+ +d
    CCE31420.1 612 VLFHGPPGTGKTLLARALANSVG---SGGRKISFYMRKGAD 649
                   689******************99...445778899865543 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.9
  RNA_helicase   2 wlyGpsgeGKStlakeLakal 22 
                   ++yG++g G  ++a  + + l
    CCE31420.1 915 LVYGSHGMGQAYIASAILHYL 935
                   69********99999987766 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.1e-05     0.039       1      36 [.     612     648 ..     612     684 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.gvnlrdvakeng 36 
                 +l  G+pG+GKt la++L+++ g+ g++++++ +++ 
  CCE31420.1 612 VLFHGPPGTGKTLLARALANSVGSgGRKISFYMRKGA 648
                 5778****************99889999999988865 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.4e-05     0.023      51      97 ..     610     659 ..     594     672 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelg...edvpfvalsgsevyslevkkte 97 
                 r+vL+ Gp+gtGkt la a+++++g   +++ f + +g++  s  v  +e
  CCE31420.1 610 RGVLFHGPPGTGKTLLARALANSVGsggRKISFYMRKGADALSKWVGEAE 659
                 89**********************86667999999999988887665554 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00018      0.17      25      43 ..     612     630 ..     608     637 .. 0.90
   2 ?   -3.5   0.0         6   5.6e+03      25      44 ..     914     933 ..     913     940 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +l+ GppG+GKt+la++l+
    CCE31420.1 612 VLFHGPPGTGKTLLARALA 630
                   799*************996 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6
  Mg_chelatase  25 lllvGppGsGKtmlakrlps 44 
                   +l++G+ G G++ +a+++  
    CCE31420.1 914 FLVYGSHGMGQAYIASAILH 933
                   6899***********99865 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00024      0.22     117     139 ..     612     634 ..     604     638 .. 0.88
   2 ?   -1.9   0.0       1.5   1.4e+03     118     139 ..     915     936 ..     911     942 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavp 139
                 v+f+Gp+ tGkt la+a+a+ v 
  CCE31420.1 612 VLFHGPPGTGKTLLARALANSVG 634
                 89*****************9886 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
   Parvo_NS1 118 wfyGpantGktnlaeaIakavp 139
                 ++yG+   G  ++a+aI + + 
  CCE31420.1 915 LVYGSHGMGQAYIASAILHYLE 936
                 689**************99775 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00019      0.18       5     100 ..     612     722 ..     609     747 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
      AAA_14   5 lvitGaRrvGKTtllkqlikell.vkkesilyinldderdkk.ladpekllelileklkeekktylflDEiqev............pewekalkslvd. 88 
                 ++  G+  +GKT l++ l+++     ++  +y+    + ++k   + ek l+l++e++++ + +++f+DEi  +             ++ ++l  l+d 
  CCE31420.1 612 VLFHGPPGTGKTLLARALANSVGsGGRKISFYMRKGADALSKwVGEAEKQLRLLFEEARKTQPSIIFFDEIDGLapvrsskqeqihASIVSTLLALMDg 710
                 56789999**********987776444444555444444433144555677888887655699********9887777777777776666777777775 PP

      AAA_14  89 .egknldvivtGS 100
                  +g +++viv G 
  CCE31420.1 711 mDG-RGQVIVIGA 722
                 333.667777775 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00029      0.28      25      58 ..     601     634 ..     596     686 .. 0.84
   2 ?   -3.8   0.0       8.3   7.9e+03      36      58 ..     914     936 ..     912     943 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00029
       AAA_7  25 llelllknkkpvllvGptGtGKtviikdllkkld 58 
                 +++ +++  + vl+ Gp GtGKt++++ l +++ 
  CCE31420.1 601 FTKFHVTPPRGVLFHGPPGTGKTLLARALANSVG 634
                 66778888999***************99988775 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 8.3
       AAA_7  36 vllvGptGtGKtviikdllkkld 58 
                 +l++G+ G G   i++ +l+ l+
  CCE31420.1 914 FLVYGSHGMGQAYIASAILHYLE 936
                 7999********99999988776 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0037       3.5      23      45 ..     610     632 ..     599     652 .. 0.83
   2 ?   -1.2   0.0       1.6   1.5e+03      92     143 ..     672     725 ..     656     750 .. 0.57
   3 ?    0.8   0.0      0.38   3.5e+02      23      44 ..     912     933 ..     897     946 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0037
                      S-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraihea 45 
                        vl +G  GtGK+llara+ ++
       CCE31420.1 610 RGVLFHGPPGTGKTLLARALANS 632
                      569***************99774 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.6
                      TTTSEEEEETGGGS-H...HHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS CS
  Sigma54_activat  92 adgGtlfLDeigelpl...elQekLlrvlqegevervGsskeikvdvriiaatne 143
                      ++ +++f+Dei  l +   + Qe++   + +  +  + +    + +v +i atn+
       CCE31420.1 672 TQPSIIFFDEIDGLAPvrsSKQEQIHASIVSTLLALMDG-MDGRGQVIVIGATNR 725
                      345789999998876422255666666665554444433.333456666666665 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.38
                      S-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraihe 44 
                       + l+ G  G G  ++a+ai +
       CCE31420.1 912 PRFLVYGSHGMGQAYIASAILH 933
                      5689**************9844 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0017       1.6      24      77 ..     612     668 ..     606     702 .. 0.73
   2 ?    0.8   0.0      0.52     5e+02      11      79 ..     901     980 ..     897     991 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0017
                      EEEEEETT--HHHHHHCC--T..TS-EE--SSTTHHHH-HHHHHHHTTTSE.EEEEE CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhkn..sgpwleifvverlaklpldlleqakggt.Lylkd 77 
                      v+  G++G+gk+l Ar+L+++  sg+    f + ++a++ ++++ +a+ ++ L++++
       CCE31420.1 612 VLFHGPPGTGKTLLARALANSvgSGGRKISFYMRKGADALSKWVGEAEKQLrLLFEE 668
                      8999**************997334445555788888888888887764432144443 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.52
                      HHHHHHHHT-SS-EEEEEETT--HHHHHHC.C--TTS-EE--SSTTHHHH-H.......HHHHHHT...TTSEEEEEE-T CS
  Sigma54_activ_2  11 kerLeqaaqsklpvfltGekGsgkelvArl.Lhknsgpwleifvverlaklp.......ldlleqa...kggtLylkdia 79 
                      +++ +q +      ++ G  G g+ ++A + Lh  +g  ++ f++  l +          +l++++   k+ ++y+++i+
       CCE31420.1 901 QQEFDQSRIFRPRFLVYGSHGMGQAYIASAiLHYLEGVHVQNFDLPALLADGrameqviVSLFAEVrrhKPSVIYIPNID 980
                      55566666666677999********9997625666666666666644432112223333444444355588888888887 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0004      0.38       3      41 ..     612     645 ..     610     713 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEE CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFfls 41 
                 v+ +G++G GKT L++ la    +g       k +F+++
  CCE31420.1 612 VLFHGPPGTGKTLLARALANSVGSGG-----RKISFYMR 645
                 789****************9998887.....25566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.12u 0.31s 00:00:01.43 Elapsed: 00:00:00.50
# Mc/sec: 10548.91
//
Query:       CCE31421.1  [L=143]
Description: uncharacterized protein CPUR_05274 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-05   24.9   0.0    4.1e-05   23.9   0.0    1.5  1  Helitron_like_N  Helitron helicase-like domain at N-terminus


Domain annotation for each model (and alignments):
>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   2.3e-09   4.1e-05      45     129 ..      57     138 ..      20     143 .] 0.78

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.3e-09
  Helitron_like_N  45 knqkelraesltgeeLkealeeetedeelkllgklvilpssvpgsprymqe.krqdlmaivrelgkPdlFiTltcndk.wpeikeel 129
                      k+    + e++t e+L+e+++++ +d ++   +++++++ + p ++    + k + + a+vr l +P+lF+T ++++  w+++ + +
       CCE31421.1  57 KD----QREDITVEKLREMFNQN-SDGAQTFQKSITRYAGNKPVGHSLILAvKAKGAAAMVRGLECPSLFMTSSAAELhWESLAKLM 138
                      22....446789999*******8.66668999999999999999999876626677899*******************999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1139.27
//
Query:       CCE31422.1  [L=255]
Description: related to DFR1-dihydrofolate reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-29  101.3   0.0    8.9e-16   58.0   0.0    2.8  3  DHFR_1          Dihydrofolate reductase
      0.001   19.3   1.9     0.0016   18.6   1.9    1.3  1  CPSF100_C       Cleavage and polyadenylation factor 2 C-termi
     0.0015   18.6  13.9     0.0016   18.5  13.9    1.1  1  TFIIA           Transcription factor IIA, alpha/beta subunit
     0.0086   16.3   0.7      0.009   16.2   0.7    1.1  1  DDHD            DDHD domain
  ------ inclusion threshold ------
      0.011   13.9   2.5      0.014   13.6   2.5    1.1  1  DUF2126         Putative amidoligase enzyme (DUF2126)
      0.012   15.2   1.9      0.014   14.9   1.9    1.1  1  Baculo_PP31     Baculovirus 33KDa late protein (PP31)
      0.016   15.5   3.0      0.025   14.9   3.0    1.3  1  RskA            Anti-sigma-K factor rskA
      0.016   14.2   0.0       0.02   13.8   0.0    1.1  1  CSG2            Ceramide synthase regulator
       0.02   13.6   4.5      0.024   13.4   4.5    1.1  1  Presenilin      Presenilin
      0.033   13.2   0.5      0.039   12.9   0.5    1.1  1  DUF913          Domain of Unknown Function (DUF913)
       0.04   13.1   1.0      0.057   12.6   1.0    1.2  1  TRAP_alpha      Translocon-associated protein (TRAP), alpha s
      0.062   12.6   3.4      0.085   12.1   3.4    1.1  1  Peptidase_U57   YabG peptidase U57
      0.081   13.0   3.9       0.12   12.5   3.9    1.2  1  Gti1_Pac2       Gti1/Pac2 family
       0.14   12.5   0.3       0.25   11.7   0.3    1.3  1  SDH_beta        Serine dehydratase beta chain
        0.2   11.7   2.7       0.24   11.4   2.7    1.1  1  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr
       0.25    9.2  16.5       0.31    8.9  16.5    1.1  1  DUF4175         Domain of unknown function (DUF4175)
        0.6    9.8   4.4       0.83    9.4   4.4    1.2  1  Connexin        Connexin
       0.63    8.9   3.7       0.76    8.6   3.7    1.1  1  MDM10           Mitochondrial distribution and morphology pro
          1    9.1   8.7        1.6    8.5   8.7    1.2  1  RR_TM4-6        Ryanodine Receptor TM 4-6
        1.1    8.4   3.9        1.4    8.1   3.9    1.1  1  Zip             ZIP Zinc transporter
        1.5    7.2   8.4          2    6.8   8.4    1.1  1  TMEM214         TMEM214, C-terminal, caspase 4 activator
        1.6    8.5  13.3        2.5    7.9  13.3    1.2  1  TraF            F plasmid transfer operon protein
        3.9    6.8  16.3        6.5    6.0  16.3    1.3  1  CobT            Cobalamin biosynthesis protein CobT
        4.4    6.0   5.1        5.6    5.7   5.1    1.1  1  ALMT            Aluminium activated malate transporter
        5.1    6.0   4.9        6.6    5.7   4.9    1.1  1  CLN3            CLN3 protein
        5.6    6.5  25.4          8    6.0  25.4    1.1  1  Spt20           Spt20 family
          6    4.9   7.9        7.3    4.6   7.9    1.0  1  Hid1            High-temperature-induced dauer-formation prot
        6.6    6.7  12.2        9.2    6.3  12.2    1.2  1  TERB2           Telomere-associated protein TERB2
        9.9    3.9   9.9         12    3.6   9.9    1.0  1  V_ATPase_I      V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> DHFR_1  Dihydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   1.4e-18   8.9e-16       2      71 ..       5      87 ..       4     117 .. 0.78
   2 ?   -1.9   0.2       3.8   2.3e+03     156     156 ..     122     122 ..      97     142 .. 0.52
   3 !   40.7   0.0     3e-13   1.9e-10      65     129 ..     139     207 ..     117     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 1.4e-18
                EEEEEEEETT-EEEBTTB-SS-.-HHHHHHHHHHHTT..........CEEEEEHHHHHCC-...S--TTCEEEEE-S-TT--- CS
      DHFR_1  2 islivAvaengvIGkdnklpwh.lpeDlkrFkklTtg..........kpvimGrkTfeslg..krpLpnrkniVltrnedlkv 71
                +++ivA ++   IG++++lpw  l++++++Fk++T            ++vimGrkT++s++  +rpL nr niV+tr +++++
  CCE31422.1  5 LTVIVAATRSLGIGRNGSLPWPpLRKEMQYFKRVTSRvapqsppdaiNAVIMGRKTWDSIPpsFRPLRNRFNIVITRAAAAAA 87
                789******************559***********85334444444478***********9999*************988554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.8
                 E CS
      DHFR_1 156 f 156
                  
  CCE31422.1 122 Q 122
                 1 PP

  == domain 3  score: 40.7 bits;  conditional E-value: 3e-13
                 S-TT---TTEEEESSHHHHCCCCTTS...SEEEEEE-HHHHHHCGGG..-SEEEEEEESS----SEE-- CS
      DHFR_1  65 rnedlkvegvevvssleealalakee..keevfviGGaeiYkqalpl..adklylTeidaefegdtffp 129
                 ++++ + ++++ v sl++ala++k++   +++fviGG++iY+qal+l  ++++ lT+++ efe+dtff 
  CCE31422.1 139 QQHQEQHPQTVHVPSLDDALAFVKNNplISRAFVIGGGQIYEQALRLseTKRVLLTRVEGEFECDTFFG 207
                 4444555678899********888887989**************97622669***************95 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   1.9   2.6e-06    0.0016      36     127 ..      99     200 ..      68     206 .. 0.40

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.6e-06
   CPSF100_C  36 eaeeeekeeeeeeeeeeeeeeeaskkqkl.....aeksekeaseeeseekkeslptld.vlpankas...vrs...aaqplfvGdlrLadLkkallssg 122
                 ++++++k +eee+ee+++ +++++++q++     +++++ +++++e++ ++  +p ld +l+  k +    r       +++   lrL++ k++ll++ 
  CCE31422.1  99 DQQHQQKPNEEEQEEQNH-KQPMQQRQQQqqqhqQQQQQLKQQHQEQHPQTVHVPSLDdALAFVKNNpliSRAfviGGGQIYEQALRLSETKRVLLTR- 195
                 222222222222222222.2222333333111112222222222222223333333331221111111011111112333344568888888888765. PP

   CPSF100_C 123 ikAEF 127
                 ++ EF
  CCE31422.1 196 VEGEF 200
                 66666 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5  13.9   2.6e-06    0.0016     170     225 ..      98     148 ..      33     187 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.6e-06
       TFIIA 170 aaqssvaalqaqsqqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqeesqqa 225
                   q+  +++++++q+ q   +p+qq     +qqqqqq+qqqqqq +qq+qe++ q+
  CCE31422.1  98 SDQQHQQKPNEEEQEEQNHKQPMQQ-----RQQQQQQHQQQQQQLKQQHQEQHPQT 148
                 1111111112111221222222222.....22333333333444444444322222 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.7   1.5e-05     0.009     122     174 ..      90     142 ..      30     250 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.5e-05
        DDHD 122 laeeesaslaessksherasesskasqeskaaesstasssaksskaeekvele 174
                 l++ +  ++ ++++++ +++e++++++++ +++++++++++++++++ k++ +
  CCE31422.1  90 LKDVSGGASDQQHQQKPNEEEQEEQNHKQPMQQRQQQQQQHQQQQQQLKQQHQ 142
                 33333333333333333333333333222222222222222222222111111 PP

>> DUF2126  Putative amidoligase enzyme (DUF2126)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.5   2.2e-05     0.014     232     316 ..      59     145 ..      33     167 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.2e-05
     DUF2126 232 akwksekwklr..rerlvlvpGdsplGlRlPldslplveeeeleaeveedpleereelpeeaaeaeeeeekeekekakeeeeekeke 316
                 ++w s + ++r  r+r+ +v   +++   lPl+ ++  ++++++++++++  +e+++ ++ +++++++++++++++++ +++++e++
  CCE31422.1  59 KTWDSIPPSFRplRNRFNIVITRAAAAAALPLKDVSGGASDQQHQQKPNEEEQEEQNHKQPMQQRQQQQQQHQQQQQQLKQQHQEQH 145
                 578888877775578999999999999******999887766555544444444444333222222222222222222222222221 PP

>> Baculo_PP31  Baculovirus 33KDa late protein (PP31)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.9   2.3e-05     0.014     206     259 ..      73     150 ..      23     158 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.3e-05
  Baculo_PP31 206 l........................nekektaassasvvetaasksksrkRkeskkakkkkkkakkkkkkkseppave 259
                                           ++++++++ +++ +e++++k+  ++R+++++++++++++ k+++++++p++v+
   CCE31422.1  73 NrfnivitraaaaaalplkdvsggaSDQQHQQKPNEEEQEEQNHKQPMQQRQQQQQQHQQQQQQLKQQHQEQHPQTVH 150
                  055555555555555566555665577777777777777777777778889888666666666666666666666654 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   3.0     4e-05     0.025       8      97 ..      37     152 ..      32     169 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4e-05
                 HHHHTT-X......................................XXXXXXXXXX....XXXX.........................XXXXXXXXXX CS
        RskA   8 rilaalaatpqaaaaaaaaaaapppaaapaararr...........laaaaAaall....lvlg...............qlavasaaldplrqsaaqae 76 
                 r+  ++a+++++ a  a+   ++++   p+                ++ aaAaa+l    +  g               +++  +++ ++ +q+++q +
  CCE31422.1  37 RVTSRVAPQSPPDAINAVIMGRKTWDSIPP----SfrplrnrfnivITRAAAAAALplkdVSGGasdqqhqqkpneeeqEEQNHKQPMQQRQQQQQQHQ 131
                 566666666555555555554433333333....03344699999733333333334466555599*********988755555555555555555556 PP

                 XXXXXXXXXXXXX.XXXXXXX CS
        RskA  77 avvavlaapdaagatatvvds 97 
                 ++ + l ++ ++++  tv++ 
  CCE31422.1 132 QQQQQLKQQHQEQHPQTVHVP 152
                 666666666555555555544 PP

>> CSG2  Ceramide synthase regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.3e-05      0.02      82     181 ..     101     202 ..      78     207 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.3e-05
        CSG2  82 vsekesskenklesnsessleleekvesdeeleekteeeklekvaekekkllsvs.tlkyvakllilslllvia.vltynlaLslsPafdvaliqntsi 178
                  ++++ ++e+++e+n+++ ++++++++++++ ++++ +++ ++++ ++ ++ s +  l +v +  ++s   vi     y+ aL ls +  v l +    
  CCE31422.1 101 QHQQKPNEEEQEEQNHKQPMQQRQQQQQQHQQQQQQLKQQHQEQHPQTVHVPSLDdALAFVKNNPLISRAFVIGgGQIYEQALRLSETKRVLLTRVEGE 199
                 2333334566666666666777776666666666666666666666888888876478888888889988888625789******99988888777777 PP

        CSG2 179 Fei 181
                 Fe 
  CCE31422.1 200 FEC 202
                 775 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   4.5     4e-05     0.024     243     290 ..     100     145 ..      74     185 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4e-05
  Presenilin 243 kkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeess 290
                 ++++++ +++++ee++  +++ ++q++++++++++++++ +++++e++
  CCE31422.1 100 QQHQQKPNEEEQEEQN--HKQPMQQRQQQQQQHQQQQQQLKQQHQEQH 145
                 1111111111111111..112222222222222222222222222221 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   6.3e-05     0.039     272     340 ..      98     163 ..      48     183 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.3e-05
      DUF913 272 seasssssssetkeeekssededvemeda.eeetesesdeseeseeekekns...lldyilnvakFLeallsn 340
                 s+++ ++   + +eee+++++ ++ m++  ++++++++++++ +++++e+++    ++ ++ +  F+    +n
  CCE31422.1  98 SDQQHQQ---KPNEEEQEEQNHKQPMQQRqQQQQQHQQQQQQLKQQHQEQHPqtvHVPSLDDALAFV----KN 163
                 1111111...111111122222223333322222222233333333344443223444444444443....34 PP

>> TRAP_alpha  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.0   9.2e-05     0.057      13      85 ..      91     164 ..      79     186 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.2e-05
  TRAP_alpha  13 vllllssatkvvaaaaaeedevdde.lvdveaedeeveeeeeeeeeeeeeeeedeeelkaspdadttilFtkpv 85 
                   ++  ++ ++++++ +ee++ +++  + +++ +++++++++++++ +++ +e++ ++ + p+ d  + F+k  
  CCE31422.1  91 KDVSGGASDQQHQQKPNEEEQEEQNhKQPMQQRQQQQQQHQQQQQQLKQQHQEQHPQTVHVPSLDDALAFVKNN 164
                 4444444444333333333333333223333333333333334444444566666688999*********9865 PP

>> Peptidase_U57  YabG peptidase U57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.4   0.00014     0.085      42     111 ..      86     156 ..      75     167 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
  Peptidase_U57  42 adapldDLekveeeevkekkkkleekveeslkkllkerkeeeekkkkk.ekkekekeeafelpgkvLhlDg 111
                    a  pl+D +   +++++++k ++ee++e++ k+ +++r++++++++++ ++ +++++e+   + +v  lD 
     CCE31422.1  86 AALPLKDVSGGASDQQHQQKPNEEEQEEQNHKQPMQQRQQQQQQHQQQqQQLKQQHQEQHPQTVHVPSLDD 156
                    34478899988889999999999999999999999999988884333303334444444444555555555 PP

>> Gti1_Pac2  Gti1/Pac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.9   0.00019      0.12      94     164 ..     100     170 ..      88     178 .. 0.43

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00019
                 ----------------.................---------------------------------.-EEEE CS
   Gti1_Pac2  94 kskestkkeesksekasssssesseakessssseskasksskslekdserslvgsltdsykfkkdg.LvKkT 164
                 ++++++++ee+++e+++++  ++ +++++++ ++++++ +++++e++ ++  v sl d+ +f k++ L+ ++
  CCE31422.1 100 QQHQQKPNEEEQEEQNHKQPMQQ-RQQQQQQHQQQQQQLKQQHQEQHPQTVHVPSLDDALAFVKNNpLISRA 170
                 12222222222222212222222.111122222122333333444444444444888888886665577665 PP

>> SDH_beta  Serine dehydratase beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3    0.0004      0.25      80     153 ..     104     181 ..      76     182 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0004
                 GHHHHHHHHHHHTEEEETTTEEEE--HHHHEEEETT---SS-SSEEEEEEE-TTS....-EEEEEEEEEETTTEEEET CS
    SDH_beta  80 avesrleeieeekklklagekeiefdeeedivlekkkslplhsnglelsaldeeg....ellleetyySiGGGfivee 153
                 + +++ e+ e+++k +++++++ + +++++    k++++++h++++++  ld++     +  l ++ + iGGG i e+
  CCE31422.1 104 QKPNEEEQEEQNHKQPMQQRQQQQQQHQQQQQQLKQQHQEQHPQTVHVPSLDDALafvkNNPLISRAFVIGGGQIYEQ 181
                 33444455556666666665455555555555556678999*******999776522223444556788*****9876 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.7   0.00038      0.24     130     180 ..      98     150 ..      29     170 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00038
                     -------------------------------SS---TTGGG--.......--- CS
  Neur_chan_memb 130 aeelilskskseskkaklseeqgsekastckckckegeeaspstqlsk..eel 180
                     +++  ++k+++e +++++++++ ++++++++  ++++++ ++++q ++    +
      CCE31422.1  98 SDQQHQQKPNEEEQEEQNHKQPMQQRQQQQQQHQQQQQQLKQQHQEQHpqTVH 150
                     33333333333333333333333333333333333333333222222222333 PP

>> DUF4175  Domain of unknown function (DUF4175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  16.5   0.00049      0.31     639     683 ..     100     144 ..      67     161 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00049
     DUF4175 639 qqgqqgqqqggqqgqgqqgegeqeeeaaealaerQqaLreqLeel 683
                 qq qq  ++++q++q++++ ++q+++++++ +++Qq+L++q +e+
  CCE31422.1 100 QQHQQKPNEEEQEEQNHKQPMQQRQQQQQQHQQQQQQLKQQHQEQ 144
                 111111111222333333333333333344455555555555444 PP

>> Connexin  Connexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.4    0.0013      0.83     101     144 ..     104     143 ..      85     173 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0013
    Connexin 101 eekekekeeeekeeeekeeekkkkkekkkkkkkeeekekkkeeg 144
                 +   k +eee++e+++k+ +++++++++ ++++++++ k+++++
  CCE31422.1 104 Q---KPNEEEQEEQNHKQPMQQRQQQQQ-QHQQQQQQLKQQHQE 143
                 1...111222222222222222211111.111111222222221 PP

>> MDM10  Mitochondrial distribution and morphology protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.7    0.0012      0.76     327     372 ..     102     148 ..      90     200 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
       MDM10 327 eeeeekekeeesvkskkeakkkkke.kekeeekstfssslekadkek 372
                 ++++ +e+e+e++++k+ +++++++ +++++++++ ++++++++ ++
  CCE31422.1 102 HQQKPNEEEQEEQNHKQPMQQRQQQqQQHQQQQQQLKQQHQEQHPQT 148
                 11111111111111111222211110222222222233333333333 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.7    0.0026       1.6     110     153 ..     102     141 ..      79     161 .. 0.38

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0026
                 X.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXX CS
    RR_TM4-6 110 aeekadaengekeekekekeeeekeseeeeeekkkkkkakskkk 153
                 +++k ++e++e++++++  ++    ++++++++++ +++ ++++
  CCE31422.1 102 HQQKPNEEEQEEQNHKQPMQQR---QQQQQQHQQQ-QQQLKQQH 141
                 1111111111111111111111...1111111111.11111111 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.9    0.0023       1.4     129     180 ..      98     147 ..      79     182 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0023
         Zip 129 ndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkekla 180
                 +d+ ++++ +e++++e++++++ ++ +  ++q++++++++q ++++++++++
  CCE31422.1  98 SDQQHQQKPNEEEQEEQNHKQPMQQRQ--QQQQQHQQQQQQLKQQHQEQHPQ 147
                 233333333333333333333333333..33333333333333333333333 PP

>> TMEM214  TMEM214, C-terminal, caspase 4 activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.4    0.0032         2      58     108 ..     104     159 ..      82     168 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0032
     TMEM214  58 kkqnkeqvpekstseaeekkksnkkkkkkks.....ekkkeepkekkpktledAlk 108
                 +k+n e+ +e++ +++ +++++++++++++      ++++++p++ ++ +l+dAl 
  CCE31422.1 104 QKPNEEEQEEQNHKQPMQQRQQQQQQHQQQQqqlkqQHQEQHPQTVHVPSLDDALA 159
                 22333333333333333333333333333331122245555566666667777775 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  13.3    0.0041       2.5       9      71 ..     101     163 ..      98     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0041
        TraF   9 pkekeekkekakppkaakpalkeptseesatesaaelrkeleelldkAilnPteenveaylrl 71 
                 ++++++++e++++++ ++p ++ ++++++++++ ++l+++++e+  + +  P+ +++ a+++ 
  CCE31422.1 101 QHQQKPNEEEQEEQNHKQPMQQRQQQQQQHQQQQQQLKQQHQEQHPQTVHVPSLDDALAFVKN 163
                 4446667777777777888888999******************************99999875 PP

>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  16.3     0.011       6.5     207     257 ..      94     144 ..      80     157 .. 0.40

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
        CobT 207 saeepeeedeeeeedeeeeeeeseee..eeegedddkeeqeeaaseeeeeede 257
                 s+ +++++ +++ ++ee+ee+++ ++  ++ ++++++ +q++++ +++  +++
  CCE31422.1  94 SGGASDQQHQQKPNEEEQEEQNH-KQpmQQRQQQQQQHQQQQQQLKQQ-HQEQ 144
                 44444444444444333333332.222222222222222222222222.1111 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.1    0.0091       5.6     371     418 ..     100     147 ..      77     168 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0091
        ALMT 371 ekkeeekeseskkeeaeaveeaeseseksllkeskrslklskkesapa 418
                 ++++++ ++e+++e+++++ +++ +++++++++++++lk++++e+ p+
  CCE31422.1 100 QQHQQKPNEEEQEEQNHKQPMQQRQQQQQQHQQQQQQLKQQHQEQHPQ 147
                 222222222222222222222222222223333333333333333333 PP

>> CLN3  CLN3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   4.9     0.011       6.6     177     228 ..     105     142 ..      77     168 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.011
        CLN3 177 aeeeeeeyekleeeeeeeeeeseeeelleseaasaaeeeeeeesselkkslk 228
                 +++ee e+             +e+++++ +++ +++++++++++++lk++ +
  CCE31422.1 105 KPNEE-EQ-------------EEQNHKQPMQQRQQQQQQHQQQQQQLKQQHQ 142
                 11111.11.............1111111111111111111111111111111 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  25.4     0.013         8     101     147 ..     101     148 ..      93     167 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.013
       Spt20 101 sqktq.dqkqsq.qnqqqqqqqqqqqqqqqqqqeqqqqqnekdstttee 147
                 + +++ ++++ q  ++++q+ qq+qqqqqq qq+qqq +++ +++  ++
  CCE31422.1 101 QHQQKpNEEE-QeEQNHKQPMQQRQQQQQQHQQQQQQLKQQHQEQHPQT 148
                 2222222222.23555555555555555555555555555555555444 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.9     0.012       7.3     579     627 ..     107     154 ..      80     169 .. 0.44

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.012
        Hid1 579 aseeiersnesarldsideeeeenssessrieesrsesrspslsevpel 627
                 ++ee e++n+++ +++ +++++++++++++ ++ ++++++p++ +vp+l
  CCE31422.1 107 NEEEQEEQNHKQPMQQRQQQQQQHQQQQQQLKQ-QHQEQHPQTVHVPSL 154
                 112222222222233333333333333333332.222233334444444 PP

>> TERB2  Telomere-associated protein TERB2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  12.2     0.015       9.2     106     154 ..     100     148 ..      85     165 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.015
       TERB2 106 eqdnqslveqssevhsaeepeiakdslleekeeqasklaksaeksatst 154
                 +q++q   e+++e++ +++p ++++++++++++q+++l++++++++++t
  CCE31422.1 100 QQHQQKPNEEEQEEQNHKQPMQQRQQQQQQHQQQQQQLKQQHQEQHPQT 148
                 4455555556666666666666666655555555555555555555555 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   9.9      0.02        12     649     691 ..     101     144 ..      82     161 .. 0.40

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.02
  V_ATPase_I 649 eeeee.eeeeeeeeeeeeeeeaeeeeeeeeeeeeeeeeeeeeee 691
                 +++++ +eee+ee+++++  ++++++++++++++++ +++++e+
  CCE31422.1 101 QHQQKpNEEEQEEQNHKQPMQQRQQQQQQHQQQQQQLKQQHQEQ 144
                 11111111111111111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4356  (0.242958); expected 358.6 (0.02)
Passed bias filter:                     1662  (0.092699); expected 358.6 (0.02)
Passed Vit filter:                       429  (0.0239277); expected 17.9 (0.001)
Passed Fwd filter:                        42  (0.00234257); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.42
# Mc/sec: 1829.43
//
Query:       CCE31423.1  [L=320]
Description: related to CBP3-required for assembly of cytochrome bc1 complex [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-34  118.7   0.0    3.2e-34  118.0   0.0    1.3  1  Ubiq_cyt_C_chap  Ubiquinol-cytochrome C chaperone


Domain annotation for each model (and alignments):
>> Ubiq_cyt_C_chap  Ubiquinol-cytochrome C chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   1.8e-38   3.2e-34       2     137 ..     144     282 ..     143     286 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 1.8e-38
  Ubiq_cyt_C_chap   2 elgvpdtfagrfqllvlhtwlllrRlkaeg.pegreieqelldkffedvdeklreegvgdlsv..pkrmkklaeafygrllaydealgsddaaL 92 
                       +g++++f+++  +++lh++ll  R ++ +  + r+++q+l+d+ff d ++k++  +  ++s   ++++k+ + +++g+llayde+l ++da L
       CCE31423.1 144 TFGLQPSFSTWSHVTMLHLYLLNARVRCFPrDDYRTWQQQLIDHFFFDCERKMHIDHNITSSAlrQRYLKDVFVQWRGLLLAYDEGLFKGDAIL 237
                      69****************************7777***************************999****************************** PP

  Ubiq_cyt_C_chap  93 aaalwrnvykaslevdleklaglvgyvraqlatlsalageallvg 137
                      a alwrn++k+s++vd+++l+++vg++r+ l++l+ +++ +++ +
       CCE31423.1 238 ASALWRNLFKGSPDVDPRALCAVVGWMRSCLYELEGVSDHQFAEA 282
                      ***************************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2399.92
//
Query:       CCE31424.1  [L=427]
Description: probable CEM1-beta-keto-acyl-ACP synthase,mitochondrial [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-58  198.7   3.7    2.6e-58  197.6   0.6    2.0  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    3.4e-34  117.4   1.5    5.9e-34  116.6   1.5    1.4  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    5.1e-05   22.8   0.8    0.00072   19.0   0.1    2.2  2  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
      0.082   12.6   4.0       0.26   11.0   0.2    3.1  3  Thiolase_C       Thiolase, C-terminal domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.6   0.6   5.7e-62   2.6e-58       1     253 []       1     257 [.       1     257 [. 0.91
   2 ?    2.1   0.1     0.027   1.2e+02      94     158 ..     292     354 ..     287     369 .. 0.60

  Alignments for each domain:
  == domain 1  score: 197.6 bits;  conditional E-value: 5.7e-62
                    X--EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHH CS
  ketoacyl-synt   1 aepvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfldvddfdpeffgispreaeamdpqqrllleaa 96 
                    +++v+++G+ga++P g++v  +w+ Ll+++ +i ++  +r  + ++ ++p+ +ag +++      +++   + ++  s+++ ++m+ ++++++ a 
     CCE31424.1   1 MRRVVVTGLGAVTPLGVGVARTWQRLLANECGIVSVA-SRQPQARWTELPSLVAGIVPVG-----EDQGQWNPADWLSASDQRRMSTFTQYAMAAG 90 
                    689*********************************9.58899999999*********93.....57888888999999999************** PP

                    HHHHHHHTS-HHTCTTGG.EEEEEEESST....HHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHH.HHHHHHHH CS
  ketoacyl-synt  97 wealedagltpeeldgsr.vgvfiGvgag....dyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSs.lvavhaav 186
                    + al+dag+++ + ++++ +gv++G+g+g       +++++ +dg+++k+sp +v+++l n +ag++++++g++Gp+++ +tAC+++ + +++a  
     CCE31424.1  91 AMALKDAGWEAIKPEHREtTGVCLGSGIGnlqdI-YETSLSHHDGGYKKVSPLFVPKILINLAAGHLAMKYGFEGPNHAATTACTTGaHSIGDAS- 184
                    *********9988888889**********76422.45556666677*****************************************77777777. PP

                    HHHHTTS-SEEEEEEEE---SHHHHHHHHHTT.BB-TTSG.....GGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 187 qslrsgeadvalaGGvellltpeavagfsaag.llspdgr.....ckafdpkadGfvlGEGvGavvLkrleda 253
                    + + +g+adv++aGG+e++++p ++agf +a+ l +++++     c++fd++ +Gfv++EG++++vL++le+a
     CCE31424.1 185 RFIAYGDADVMVAGGSEACIHPLTFAGFGRARsLATAYNHdppsaCRPFDAQRNGFVVAEGAAVLVLEELEHA 257
                    ********************************888888555588899999999*****************987 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.027
                    HHHHHHHHHHTS-HHTC...TTGGEEEEEEESSTHH.HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHH CS
  ketoacyl-synt  94 eaawealedagltpeel...dgsrvgvfiGvgagdy.aalaaldedgsevkaspkavgavlanviagri 158
                     a+++al++a ++p e+   +  ++g  +G  a+    +  +l edg+ ++ s      v+ + + g +
     CCE31424.1 292 LAMKRALKHAQIKPCEVdyiNAHATGTQVGDVAEAAaMHRLMLGEDGK-QSESQ-----VTVSSTKGSV 354
                    5889**********9994444444777777766633355556666664.22222.....1223334444 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   1.5   1.3e-37   5.9e-34       1     117 [.     265     384 ..     265     385 .. 0.95

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 1.3e-37
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG...SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar...kqplavgSvKsniGHle 91 
                      ya+ikg+++++d++h+++++++g+++  a+++al+ a+++p +vdy++ah+tgt++gD +E++a+++++  +     ++++ v+S+K ++GHl+
       CCE31424.1 265 YAEIKGYGLSGDAHHMTAPREDGRGAFLAMKRALKHAQIKPCEVDYINAHATGTQVGDVAEAAAMHRLMLGEDGkqsESQVTVSSTKGSVGHLL 358
                      8****************************************************************998765544489899************** PP

                      GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  92 aAaGvaelikvvlalkhgvipptlnl 117
                      +AaG++e++ +vl++ +g+ip+t nl
       CCE31424.1 359 GAAGAIEALFAVLSIYEGAIPATRNL 384
                      ************************98 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   1.6e-07   0.00072      65     114 ..     155     202 ..     149     210 .. 0.88
   2 ?    2.0   0.1     0.024   1.1e+02      30      61 ..     293     327 ..     290     365 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.6e-07
                 HHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEE CS
  Thiolase_N  65 qaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEs 114
                 ++a+k g+  e p ++ + +c  g++++ +a + ia g+adv+vagG E 
  CCE31424.1 155 HLAMKYGF--EGPNHAATTACTTGAHSIGDASRFIAYGDADVMVAGGSEA 202
                 56777777..778899999****************************996 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.024
                 HHHHHHHHHTS-GGGCCEEEE...EHSSCTTSTSC CS
  Thiolase_N  30 alkallekagvdpeevdeviv...Gnvlqagegqn 61 
                 a+k++l++a+++p evd++     G+ +  +++++
  CCE31424.1 293 AMKRALKHAQIKPCEVDYINAhatGTQVGDVAEAA 327
                 799**************986411133333333333 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.9   8.4e+03      25      38 ..      87     100 ..      73     103 .. 0.66
   2 ?    1.0   0.1     0.068   3.1e+02      68      87 ..     193     212 ..     182     225 .. 0.75
   3 ?   11.0   0.2   5.7e-05      0.26      20      88 ..     286     364 ..     263     376 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHT-- CS
  Thiolase_C  25 ayaikkvlkkaglt 38 
                 + a  ++lk+ag++
  CCE31424.1  87 MAAGAMALKDAGWE 100
                 44556788888886 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.068
                 GBSTT--HHHH-B-TTTHHH CS
  Thiolase_C  68 kvNvnGGaialGHPlGasGa 87 
                  v v GG+ a  HPl  +G 
  CCE31424.1 193 DVMVAGGSEACIHPLTFAGF 212
                 57799**********98884 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 5.7e-05
                 GGGHHHHHHHHHHHHHT--GGGESEEEE-..........-SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHH CS
  Thiolase_C  20 lglgPayaikkvlkkagltvedidlfEin..........EAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaR 88 
                  g g   a+k++lk+a ++  ++d++ ++          EA a   L+  ++ +  +++v v     ++GH lGa+Ga 
  CCE31424.1 286 DGRGAFLAMKRALKHAQIKPCEVDYINAHatgtqvgdvaEAAAMHRLMLGEDGKQSESQVTVSSTKGSVGHLLGAAGAI 364
                 4567789999*********99999997653333333333677777777777777777********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3212.86
//
Query:       CCE31425.1  [L=76]
Description: uncharacterized protein CPUR_05278 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 623.57
//
Query:       CCE31426.1  [L=824]
Description: probable isp4 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.4e-184  613.9  45.0   3.9e-184  613.7  45.0    1.0  1  OPT       OPT oligopeptide transporter protein
  ------ inclusion threshold ------
      0.029   14.4   0.3       0.11   12.5   0.3    2.1  1  CcmD      Heme exporter protein D (CcmD)


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  613.7  45.0  4.4e-188  3.9e-184       1     616 []     127     782 ..     127     782 .. 0.99

  Alignments for each domain:
  == domain 1  score: 613.7 bits;  conditional E-value: 4.4e-188
         OPT   1 elTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpk.........lslnpgpftikEnvliqtmasaaatlalatglivv 90 
                 ++T+Ra+++G+ll+vlg+ +n++f+lr++++si +++a+++a+p+g a++r++p+         ++lnpgpf+ikE+ +i +mas+++++a++t++i++
  CCE31426.1 127 CNTIRAWTIGLLLVVLGASMNTLFSLRQPSISIGPLVAQIIAWPMGHAWTRLMPNrtfrtfglrWNLNPGPFNIKEHSIIGVMASVSFSVAYSTDIILA 225
                 79************************************************************************************************* PP

         OPT  91 ipalelygqsagfgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegee........ksrlkfflivflgsfvwglfplylf 181
                 ++ +  y+q++g + ++ll++s+q lG+g+ag +R+flvyp+++i+P +l+ +++++a+h+  + +        + r++ f+ v +gsf+++++p++l 
  CCE31426.1 226 QRIF--YKQNFGLLFQLLLTISTQSLGYGIAGTMRRFLVYPASMIWPANLVVVTMMNAMHDMSEVRdpsvlggnMPRYRWFAFVTAGSFIYYFIPGFLA 322
                 ****..*********************************************************98899******************************* PP

         OPT 182 palssfswltwiapknvvlanlf....glgllpltfdwnviaayiGsglivplwvavnmliGavlswgiliPllyysngwypaylp............. 263
                 ++ls f++ tw ap+n+v+++lf    gl+llp+tfdw++ia y+Gs+li p+ +++n+liG+v ++++   +l +s+ wy+  lp             
  CCE31426.1 323 QFLSVFAFATWLAPQNAVVNQLFggttGLSLLPITFDWTQIAGYVGSPLIPPWHAIANTLIGVVSFYVVGCTVLHFSGAWYSEFLPmsdsstydntgas 421
                 ****************************************************************9999999999************************* PP

         OPT 264 ydvteildedgvldyekyigyglmllaalvallylvqfaaitllivhtilkhgkdikaalksarsprteeddrhrrlmrkykdvpmwwylallvlslvi 362
                 y+++++l+ d++l++e+y++y++ ++++++a++y+++faai++liv+t l++ k+i++++++    +te++d+h +lm+kyk+ p+wwy+ l+ l+lvi
  CCE31426.1 422 YNTSRVLNADFTLNEEAYKNYSPLFISTTFAMSYGLSFAAIASLIVYTYLHNRKQIWRQYRNS---STEKEDIHMKLMKKYKEAPDWWYMGLFGLMLVI 517
                 **************************************************************9...********************************* PP

         OPT 363 giivvealftqlpvwglllalllafllaivsaiiaGltglnpvsgigkltqlifgallpgrpvanlvfgavvyaaaaqagdfmqDLKtGhllkasPraq 461
                 g+++v a++t l++wg+lla++++f ++++++ii ++t+    +g+++lt+++fg++ pgrp+a+++f++++y++++qa +f++DLK Gh++k++Pr +
  CCE31426.1 518 GLFTVLAYPTKLTWWGFLLAVAISFGFSLPIGIIEAVTNN--RIGLNVLTEFVFGYIQPGRPLALMIFKTFGYITMSQALHFISDLKFGHYMKIPPRTM 614
                 ****************************************..********************************************************* PP

         OPT 462 fvaqliGtlvgavvniavlkllvkaygdictadasnaftaPqakvfaavavl..lvggk.........kglpwafllgavapfilllllkkfpkkstar 549
                 f++q+++t  +++++i vl+l +++++d+c++++++ ft+P  +vf+a++v+  l+g+          ++l  +f+lga++p+i++l  k++p ks  r
  CCE31426.1 615 FWSQVVATTFSCFIQIIVLNLALTNIPDVCEQHQQDRFTCPGGRVFYAASVIwgLIGPDrmfspgrvySSLFLFFALGAILPIIVYLGAKRWP-KSPLR 712
                 *******************************************************************999999********************.999** PP

         OPT 550 klplplafavgfylppsl.....sialligglianlwlkrrdaewakkynyvlaaGLiaGealmgviiaflv 616
                 ++ +p++f++++ +pp++     s    ++g+++++w+k+r+  w++++n+++++GL++G+al++++i+f++
  CCE31426.1 713 HVMTPIIFGGAGSIPPATplnyfS--WGLVGFLFQYWIKKRHFGWWSRLNFLTSSGLDLGLALATLFIFFAF 782
                 ******************998555..5666****************************************85 PP

>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   1.3e-05      0.11       9      33 ..     453     477 ..     452     482 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
        CcmD   9 lsYgitllvlagLilwslrdrrrll 33 
                 +sYg++++++a Li+++ +  r+++
  CCE31426.1 453 MSYGLSFAAIASLIVYTYLHNRKQI 477
                 6*****************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (824 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.41
# Mc/sec: 6008.50
//
Query:       CCE31427.1  [L=315]
Description: uncharacterized protein CPUR_05280 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-55  187.0   5.0    8.2e-55  186.0   5.0    1.4  1  BAR_2           Bin/amphiphysin/Rvs domain for vesicular traf
    1.1e-22   80.8   6.2    2.9e-21   76.2   6.2    2.1  1  BAR             BAR domain
      0.003   17.3   3.6      0.003   17.3   0.9    2.3  2  BAR_3           BAR domain of APPL family
  ------ inclusion threshold ------
       0.58    9.6   4.9        0.2   11.1   1.4    1.8  2  GCP_C_terminal  Gamma tubulin complex component C-terminal
        2.7    7.8   6.5        1.7    8.5   2.8    2.2  3  PIN_8           PIN like domain


Domain annotation for each model (and alignments):
>> BAR_2  Bin/amphiphysin/Rvs domain for vesicular trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.0   5.0   2.3e-58   8.2e-55       3     283 ..      18     299 ..      16     305 .. 0.91

  Alignments for each domain:
  == domain 1  score: 186.0 bits;  conditional E-value: 2.3e-58
       BAR_2   3 lsikkkttrllqeklgqvkdiskLPkqYleLEkkvDslekvykrlllvtktyevegYDYPpnltesisdwwksigaklkelknvssleedeivllgkkk 101
                 ++ +++  ++ +e+ gq++d  +LP++Y +LEkkvD+l++v +++l+vt+ y +e+YDYPpn++e ++d+++++++k+  l+ ++ + e++ +l+   +
  CCE31427.1  18 TPSASRIVQFTKEQFGQAEDKTQLPPDYIDLEKKVDALKQVHHKMLIVTSQYSNEAYDYPPNIKETFQDLGRTVSEKVSLLSSATTAAEAQAALITPPT 116
                 567788899************************************************************************999999999998865544 PP

       BAR_2 102 kekskeekesqatsallprtlaqalskaakdsslilqeleekdedlepLikvleqvssaykeiaeakleqDslivkefnkkLeellnqefkkvhelrkk 200
                  +              +p+t+ +a+++a+  ss+ l++  ++ + ++pL+ +le+++ a + + e++l qDs i++ f +  +++ln++++ +++ rk+
  CCE31427.1 117 VK------P-------QPKTFSHAVARASLASSQLLHQN-HTGSGEDPLATALEKYAIAMERVGESRLAQDSQIQSSFLAGWNTTLNTNLNFASRARKN 201
                 33......3.......6****************888777.4555569**************************************************** PP

       BAR_2 201 VeesRlkfdtlrseveek...............ekpeteeedkklleklEDefvsateeAvvvmkeildssklisllklfqkaqleYfekcvkkleel 283
                 Ve sRl +d ++  v+ +               e++e   + ++++ek+EDefv  teeAv vmk+++ds   + +l ++++aq +Y++k+ + l el
  CCE31427.1 202 VERSRLSLDAVKAHVKGTtfklgaqsaradqqhEEQELSSAAQEEIEKAEDEFVTQTEEAVGVMKNVIDSPDPLRNLAELIAAQIDYHKKAYEVLSEL 299
                 ***************9999*********8755444444449999**********************************************99988765 PP

>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   6.2   8.2e-25   2.9e-21       5     235 ..      21     301 ..      17     305 .. 0.81

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 8.2e-25
         BAR   5 fnRasqlleekvgkaekTk.LDedFeelerrldvteklieklvkelkeylqanpgarakqivlekl................................. 69 
                  +R+ q ++e +g+ae ++ L +d+ +le+++d ++++ +k++  +++y+    +++    ++e+                                  
  CCE31427.1  21 ASRIVQFTKEQFGQAEDKTqLPPDYIDLEKKVDALKQVHHKMLIVTSQYSN--EAYDYPPNIKETFqdlgrtvsekvsllssattaaeaqaalitpptv 117
                 58************996555*****************************98..5555555544555666899999999999999999999999999999 PP

         BAR  70 ........keqplelLaesmieagkelgedssfg.......kalekygeavkklaqteeelekrvetnfldplrellekefkeiqkerkklehkrlDyD 153
                            +   La+s      +l ++++ g        aleky+ a++++++     + +++++fl   ++ l++ +     +rk+ e+ rl +D
  CCE31427.1 118 kpqpktfsHAVARASLASS------QLLHQNHTGsgedplaTALEKYAIAMERVGESRLAQDSQIQSSFLAGWNTTLNTNLNFASRARKNVERSRLSLD 210
                 6644444433333344433......3333333334555555********************************************************** PP

         BAR 154 aakarlkklktkkskkakde..........ekaeeelrkAqqkfeesneelkaeLpnllalevefvnqlqafveaqldfhkqaaqlleqlqq 235
                 a ka++k    k   ++  +          ++a+ee++kA+++f  + ee+   ++n++++  + +++l +++ aq+d+hk+a+++l++l +
  CCE31427.1 211 AVKAHVKGTTFKLGAQSARAdqqheeqelsSAAQEEIEKAEDEFVTQTEEAVGVMKNVIDS-PDPLRNLAELIAAQIDYHKKAYEVLSELAP 301
                 ******9655443333222245678889******************************876.56679**********************987 PP

>> BAR_3  BAR domain of APPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.14   5.1e+02     120     170 ..      29      76 ..       4     106 .. 0.55
   2 !   17.3   0.9   8.5e-07     0.003     135     223 ..     225     312 ..     124     315 .] 0.79

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.14
       BAR_3 120 kkkFdkesekleaaleknaqlskkkkeseleeadnelkatrkkfhqasldy 170
                 k++F ++ +k ++    ++ l+kk     l+++ +++    +++ +++ dy
  CCE31427.1  29 KEQFGQAEDK-TQLPPDYIDLEKK--VDALKQVHHKMLIVTSQYSNEAYDY 76 
                 3333333333.3333344444443..3444444444444444444444444 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 8.5e-07
       BAR_3 135 eknaqlskkkkesele.eadnelkatrkkfhqasldyvlqinelqerkkfeiletllsfmqaqltFfhqGyelfkdlepfmkeLsaqlqq 223
                 ++ a++ ++++e+el   a++e+++++ +f  +  + v  ++ + +    + l +l +++ aq+ + ++ ye++++l p+  +L+++ + 
  CCE31427.1 225 AQSARADQQHEEQELSsAAQEEIEKAEDEFVTQTEEAVGVMKNVID--SPDPLRNLAELIAAQIDYHKKAYEVLSELAPMVDDLQTTQEA 312
                 4567788888899998888999999999999999999999998876..4688*********************************98665 PP

>> GCP_C_terminal  Gamma tubulin complex component C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.33   1.2e+03     191     205 ..      49      63 ..      14      69 .. 0.78
   2 ?   11.1   1.4   5.4e-05       0.2     219     300 ..     179     282 ..     137     290 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.33
  GCP_C_terminal 191 atdldelieaHeafL 205
                     ++++d+l ++H+++L
      CCE31427.1  49 EKKVDALKQVHHKML 63 
                     345999999999988 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.4e-05
  GCP_C_terminal 219 kllklleeilelileFakvldgly.lsvselt........................aeeaeeeeleekleerleelekeFrkkvslllkvlralk 288
                     ++l+  ++ l++ l+Fa++ ++    s                             ++++ee+el++ ++e++e+ e+eF +++++ ++v++++ 
      CCE31427.1 179 SFLAGWNTTLNTNLNFASRARKNVeRS----RlsldavkahvkgttfklgaqsaraDQQHEEQELSSAAQEEIEKAEDEFVTQTEEAVGVMKNVI 269
                     667777888999999988766633222....123567889999999999999999977778999999999*********************9984 PP

  GCP_C_terminal 289 eqe.ededlrqLl 300
                      ++ +  +l++L+
      CCE31427.1 270 DSPdPLRNLAELI 282
                     4441233666655 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.23   8.4e+02     162     178 ..      37      53 ..      19      76 .. 0.77
   2 ?    0.2   0.1      0.16   5.8e+02      56     137 ..      81     158 ..      46     175 .. 0.41
   3 ?    8.5   2.8   0.00047       1.7      21     143 ..     156     287 ..     151     303 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.23
       PIN_8 162 yenkiPPGykDekkded 178
                  ++++PP y D +k+ d
  CCE31427.1  37 DKTQLPPDYIDLEKKVD 53 
                 57899999999999865 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.16
       PIN_8  56 kkayedlekel.eklkkaaekkleealkkwakkkaldteelrkelkkqleelkeelkaeleelkksskadkeedpilkkleel 137
                 k++++dl +++ ek++   +     a++  ++++al t  + k   k ++++  + +  +++l +++++   edp+ ++le++
  CCE31427.1  81 KETFQDLGRTVsEKVSLLSS-----ATTAAEAQAALITPPTVKPQPKTFSHAVARASLASSQLLHQNHTGSGEDPLATALEKY 158
                 23333333333111111111.....2222222222222222222222222222222334444444445555567777766665 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00047
       PIN_8  21 kdllkvleklad.rlwvPhqvalEfqrnresviskekkayedlekeleklkkaaekkleealkkwakkkald.............teelrkelkkqlee 105
                 +++  ++e++++ rl    q+ + f    +++++++ + ++ ++k++e  + +++     a+k + k ++++             ++el+++ ++++e+
  CCE31427.1 156 EKYAIAMERVGEsRLAQDSQIQSSFLAGWNTTLNTNLNFASRARKNVERSRLSLD-----AVKAHVKGTTFKlgaqsaradqqheEQELSSAAQEEIEK 249
                 5666677788777888888888888877777777555555555544444333333.....222233333222222222223444589999999999999 PP

       PIN_8 106 lkeelkaeleelkksskadkeedpilkkleellegkig 143
                 +++e+ +++ee+ +  k+++++ + l++l+el+  +i 
  CCE31427.1 250 AEDEFVTQTEEAVGVMKNVIDSPDPLRNLAELIAAQID 287
                 99999888888888888888776666778888877774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1336  (0.0745161); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2296.91
//
Query:       CCE31428.1  [L=225]
Description: probable NADH-ubiquinone oxidoreductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-23   81.7   1.3    5.7e-22   77.3   0.0    2.3  2  ETC_C1_NDUFA5  ETC complex I subunit conserved region


Domain annotation for each model (and alignments):
>> ETC_C1_NDUFA5  ETC complex I subunit conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   3.2e-26   5.7e-22       1      64 [.      22      91 ..      22      94 .. 0.96
   2 !    3.2   0.2    0.0042        74      50      67 .]     167     184 ..     149     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 3.2e-26
  ETC_C1_NDUFA5  1 GLavhpnPreaLialytktLkkLkkiPessvYRqsvEaltkhRlkiVee......eedvekiekkigagq 64
                   GL +h +Pr+aL++ly +tL+kL++iPe+s+YR+svEa+t+hR+++V+       +e++ k++  i +++
     CCE31428.1 22 GLCTHSHPRSALLYLYASTLHKLQSIPEKSLYRKSVEAVTRHRMNLVDRivpagyNEWAVKAKAIISKNP 91
                   99**********************************************9999999*********999887 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0042
  ETC_C1_NDUFA5  50 eedvekiekkigagqiee 67 
                    + +++++e  igag +ee
     CCE31428.1 167 AGQIQELEHSIGAGLVEE 184
                    6789************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1693.99
//
Query:       CCE31429.1  [L=604]
Description: uncharacterized protein CPUR_05282 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.08   13.0   0.0       0.15   12.2   0.0    1.5  1  LysM      LysM domain


Domain annotation for each model (and alignments):
>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.1e-06      0.15       1      42 [.     219     260 ..     219     262 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.1e-06
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLk 42 
                 + V+++DT  +I  ry+  ++ +++ N+l s+d ++    L+
  CCE31429.1 219 HEVQPNDTYAGIVLRYKCREDIFRKSNRLWSQDSVQTRKFLI 260
                 78*****************************99777655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 4213.01
//
Query:       CCE31430.1  [L=420]
Description: probable sphingosine-1-phosphate lyase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-35  122.6   0.1    2.9e-35  122.1   0.1    1.2  1  PGAP1     PGAP1-like protein


Domain annotation for each model (and alignments):
>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.1   1.6e-39   2.9e-35     126     230 ..       2     110 ..       1     111 [. 0.97

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 1.6e-39
       PGAP1 126 asPhalpplsfdkdilklyervnefwkkeleekek....lenvllvsitggirdsmvpaeyssleelvpstnglsvattsipkvwlsidhlaivwckql 220
                 ++Ph+ pp++fd++i+++y++vn++w++++++k +    l +v+l+si+gg  d++vp++y+s+e++vp+t+g++v+tt+ip vw+s+dh+ai+wc+q+
  CCE31430.1   2 SAPHSRPPVTFDGQIVQIYDEVNKYWRRAYAQKWAsdnpLWHVTLISIAGGTLDTVVPSDYASVESIVPETHGFTVFTTGIPTVWTSMDHQAILWCDQF 100
                 89***************************9999878999************************************************************ PP

       PGAP1 221 rrvvaralle 230
                 r vva+ l++
  CCE31430.1 101 RKVVAKSLYD 110
                 ******9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3223.27
//
Query:       CCE31431.1  [L=195]
Description: probable MSP1 AAA ATPase protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-20   73.3   0.0    3.5e-20   72.8   0.0    1.3  1  AAA        ATPase family associated with various cellular act
  ------ inclusion threshold ------
      0.091   12.6   0.0        0.2   11.5   0.0    1.6  1  AAA_lid_3  AAA+ lid domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   3.9e-24   3.5e-20      35     131 ..       2     101 ..       1     102 [. 0.95

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 3.9e-24
                 SSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS.....SSTEEEEEEESSGGGSTHHHHSTTSSEEE CS
         AAA  35 lskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk.....eskvivigatnrpdkldpallrgRfdrki 128
                 ++k+ g+s+k +r++f+ a++++ p i+fiDEida+ ++r+++e+e +  v ++++t +dg+++       ++++v+gatnr++++d+a+l +R+ +k+
  CCE31431.1   2 TEKWYGDSNKIVRAVFSLARKMQ-PAIIFIDEIDAVLGTRRSGEHEASGMVKAEFMTLWDGLTSAntsglPAQIVVLGATNRINDIDEAIL-RRMPKKL 98 
                 589*******************9.****************999**********************9***9888******************.7**9998 PP

                 ETT CS
         AAA 129 eie 131
                  ++
  CCE31431.1  99 PVP 101
                 876 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.2e-05       0.2       2      20 ..     126     144 ..     125     146 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.2e-05
   AAA_lid_3   2 vdlkeLAerTeGySGADla 20 
                 +dl+++ + T+G SG Dl+
  CCE31431.1 126 FDLDHVSKITAGLSGSDLK 144
                 69****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1521.90
//
Query:       CCE31432.1  [L=128]
Description: probable MSP1 AAA ATPase protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 955.91
//
Query:       CCE31433.1  [L=22]
Description: uncharacterized protein CPUR_05286 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (22 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       184  (0.0102627); expected 358.6 (0.02)
Passed bias filter:                      148  (0.00825478); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 188.38
//
Query:       CCE31434.1  [L=503]
Description: uncharacterized protein CPUR_05287 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-11   42.6   0.0    1.8e-05   25.0   0.0    2.3  2  Ran_BP1      RanBP1 domain


Domain annotation for each model (and alignments):
>> Ran_BP1  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   9.8e-10   1.8e-05       1      40 [.     350     388 ..     350     393 .. 0.92
   2 !   15.4   0.0   9.3e-07     0.017      45      80 ..     424     459 ..     419     494 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 9.8e-10
                 ----SSTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEE CS
     Ran_BP1   1 evksgEEdEevlfkqraKLfrfdaekkewkeRGvGdiKil 40 
                 ev  gE  E ++ ++raK+f fd+++ +wkeRG G +Ki+
  CCE31434.1 350 EVDDGEAGEITMVSVRAKMFSFDKQT-GWKERGAGMLKIN 388
                 7899*******************975.8**********98 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 9.3e-07
                 TTEEEEEEEETTTTEEEEEEEE-TTS-EEESTTESS CS
     Ran_BP1  45 dekvRllmRrdqvlkvcaNhvitkemklkplagsdr 80 
                 ++  Rl++R+dq+ +v++N  i + m+++  a+ + 
  CCE31434.1 424 SKVARLILRQDQTHRVILNTAILPAMDFQETASLKS 459
                 4667************************98776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3596.08
//
Query:       CCE31435.1  [L=651]
Description: probable amino-acid N-acetyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-50  171.6   0.1    3.4e-50  170.0   0.0    1.7  2  NAT       NAT, N-acetyltransferase, of N-acetylglutamate synt


Domain annotation for each model (and alignments):
>> NAT  NAT, N-acetyltransferase, of N-acetylglutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.11     2e+03      31      59 ..      72     100 ..      52     106 .. 0.72
   2 !  170.0   0.0   1.9e-54   3.4e-50      12     161 ..     463     641 ..     456     648 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.11
                 S.SXCCHHHHHHTTSTTTSSXHHHHHHHHH CS
         NAT  31 l.idlekLksliedsfkrkldvkdYldrlk 59 
                 +  d + + s++e+   ++ d+++Yl++  
  CCE31435.1  72 QtLDRDVIVSVLESAA-TRRDARNYLQKYT 100
                 2358888889998877.8888999998764 PP

  == domain 2  score: 170.0 bits;  conditional E-value: 1.9e-54
                 SSEEEE---XEEEESSCCCS................SXCCHHHHHHTTSTTTSSXHHHHHHHHHTSXEEEEEETTXSEEEEE.....EXSS........ CS
         NAT  12 agtlirrGlkvitvkslkel................idlekLksliedsfkrkldvkdYldrlkgkiakiyiaedyeglAivtwedpkeek........ 86 
                 + tl++rG++++ +++++++                idl++L  lie+sf+rkldv+dYl+r+ +++a+i+ia++yeg+Ai+twe+p++ +        
  CCE31435.1 463 SATLVKRGMPLTIYPDPRKQqwyhpgsqsvrltdksIDLPRLVYLIENSFSRKLDVQDYLNRIDDNLAGIIIAGEYEGAAILTWESPASLTkeaahhnd 561
                 68****************999*******************************************************************9999******* PP

                 .SSXEEEEEEEXHHHHHT.THHHHHHHHH.HHHXSS.EEEEEETTXTTHHHHHHCXSEEEE..ETTEEEEEESXXXHHHHH CS
         NAT  87 .evayLdkFavlkssqgs.gvsdvvfkal.kkdfpk.LvWrsrednpvnkWyfersdGslk..ksqwvlfWyGlkdlkeve 161
                   v+yLdkFavlks+qg  +v+d+vf+a+ ++ fp+ ++Wrsr++npvnkWyfers G+ +  +s w +fW++ +d+k++ 
  CCE31435.1 562 rYVPYLDKFAVLKSQQGGsSVADIVFNAMvQDCFPNgVCWRSRKNNPVNKWYFERSRGTCRlsGSDWAMFWTT-SDFKDRD 641
                 ****************999**********7888**************************9988**********.5555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4540.60
//
Query:       CCE31436.1  [L=373]
Description: uncharacterized protein CPUR_05289 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.8e-15   54.8   9.2    1.4e-14   54.2   9.2    1.2  1  Yip1         Yip1 domain
      0.006   16.4   2.8     0.0095   15.7   2.8    1.3  1  DUF1282      Protein of unknown function (DUF1282)
  ------ inclusion threshold ------
       0.32   11.2   1.3       0.47   10.7   0.4    1.7  2  Prok-RING_2  Prokaryotic RING finger family 2
       0.42    8.8   3.0       0.58    8.4   3.0    1.1  1  DUF2070      Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   9.2   3.1e-18   1.4e-14      17     153 ..     155     269 ..     125     284 .. 0.86

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 3.1e-18
        Yip1  17 p..ilrapdlallllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhliakllggkgsfkqtlsvvgyallPlil 113
                     lr++dl+++l+++l l l+l ++            + + ++ ++++++++ ++   lg ++++l ++l    lgg++sf+q+++++gy+l+Pl++
  CCE31436.1 155 MssGLRDWDLWGPLIFCLLLSLLLSIA------------ARTEQKDTVFSGVFAMIW---LGEAVVTLQIKL----LGGNISFAQSVCIIGYTLFPLVI 234
                 3567899********************............889999************...9***********....*********************** PP

        Yip1 114 galiaillllllgtllllvgllaliWslvllylglkaahn 153
                 ++l+++l l + +      + + ++ +++ l+ g++++ +
  CCE31436.1 235 AGLLSALGLHWIPR-----IPIYTALVAWSLAAGVSILGG 269
                 *************9.....666666666666666665544 PP

>> DUF1282  Protein of unknown function (DUF1282)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.8   2.1e-06    0.0095      70     124 ..     193     247 ..     172     269 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.1e-06
     DUF1282  70 ylalgvlvlayliklmgrtydsqhsyskifafaayalvplflgglalglsllllv 124
                 ++++++ +  ++++l  + ++++ s+++ + +++y+l+pl+++gl++ l l +  
  CCE31436.1 193 GVFAMIWLGEAVVTLQIKLLGGNISFAQSVCIIGYTLFPLVIAGLLSALGLHWIP 247
                 3444566666779999******************************998777754 PP

>> Prok-RING_2  Prokaryotic RING finger family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.4   1.1e+04       4      14 ..     217     227 ..     216     233 .. 0.74
   2 ?   10.7   0.4   0.00011      0.47      22      43 ..     338     359 ..     328     362 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.4
  Prok-RING_2   4 sfsqyvcdlca 14 
                  sf+q vc +  
   CCE31436.1 217 SFAQSVCIIGY 227
                  89999997655 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00011
  Prok-RING_2  22 lrqcvlcGrWacdacWkdeyyt 43 
                   r c    r +c acW+d  y+
   CCE31436.1 338 ERGCAGAARPSCTACWNDGVYL 359
                  58899999**********9996 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.0   0.00013      0.58      18     131 ..     168     281 ..     156     288 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00013
     DUF2070  18 llliillalligllaflssklfgillfglp..alvaflltlpvlrilggrltykrslflalltelivviisllaillsallqalvllalvlslalvfal 114
                 l++ +ll+ll++++a + +k   +++ g+   + +  ++++  +++lgg++   +s+ +   t++++vi  ll++l  ++++++ ++  +++++l++++
  CCE31436.1 168 LIFCLLLSLLLSIAARTEQK--DTVFSGVFamIWLGEAVVTLQIKLLGGNISFAQSVCIIGYTLFPLVIAGLLSALGLHWIPRIPIYTALVAWSLAAGV 264
                 78999999999999988877..3333333322333344555667799********************************9999999999999******* PP

     DUF2070 115 rllvlvavsdesllkav 131
                 ++l    v ++++  a+
  CCE31436.1 265 SILGGSGVVKNRVAIAI 281
                 99998888888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2912.02
//
Query:       CCE31437.1  [L=1132]
Description: related to helicases [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-26   91.6   0.0    8.9e-26   90.7   0.0    1.4  1  DEAD        DEAD/DEAH box helicase
    2.4e-20   73.1   0.4    9.5e-20   71.2   0.4    2.1  1  DUF1998     Domain of unknown function (DUF1998)
    6.8e-11   42.5   0.0    3.6e-10   40.2   0.0    2.3  2  Helicase_C  Helicase conserved C-terminal domain
    6.3e-07   29.5   0.0    1.2e-06   28.6   0.0    1.4  1  ResIII      Type III restriction enzyme, res subunit
    1.3e-05   25.5   0.0    2.9e-05   24.4   0.0    1.7  1  CDT1        DNA replication factor CDT1 like


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   2.5e-29   8.9e-26       2     170 ..     371     543 ..     370     548 .. 0.87

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 2.5e-29
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.SEEEEE..ETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx..xxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid.lrvlli..iggvaardqlskldng 97 
                 + Qaea++ + +g++v++a  T sGK+l++++pv++++   +++  ++a+++ Pt++La+++ + lk++++y+  l+  l+  + g++   +++ ++++
  CCE31437.1 371 AHQAEALNRLQNGQNVVIATSTSSGKSLIYQLPVVHAL---EKNVLTRAMYIFPTKALAQDQKRSLKQIFSYMPnLEHTLVetFDGDTPMAERNIIREH 466
                 68*********************************999...467777************************95535554443377***********999 PP

                 CSEEEEEHHHHHHHH....HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddll....stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlp 170
                 +++++++p++l+  +    ++ +  l ++r++V+DE + +     + ++  i+++l++i++     q q++ +SAT+ 
  CCE31437.1 467 ARVIFTNPDMLHVTIlpqeERWRSFLVNLRYVVVDELHYYNGH-LGSHVAFIMRRLRRICAAVGnRQIQFVSCSATVA 543
                 ************9666965344444*****************9.9***********9999998889999*******97 PP

>> DUF1998  Domain of unknown function (DUF1998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.4   2.6e-23   9.5e-20       1      83 []     974    1063 ..     974    1063 .. 0.94

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 2.6e-23
     DUF1998    1 lehalinalplflqcdesdlgteckapedep......rkrpariliydavp..gGaGiaekaaelleellraalelieecdCeeaGCpaCl 83  
                  +eha++++lp+f+ + ++d++teck++ +e+      r rpar+++yda++  +G+Gi++ka+++++ llr al+++e+c C+  GC +C+
  CCE31437.1  974 AEHAVMSLLPTFVISMPEDVRTECKVALKEFsasetqRIRPARLTFYDAKGgaSGSGISTKAFDHIDHLLRMALKRVEACACQ-LGCLECV 1063
                  69***********************7777667788889*************788999*************************7.******8 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.1   7.7e+03      54      75 ..     372     392 ..     363     395 .. 0.77
   2 !   40.2   0.0     1e-13   3.6e-10       7     110 ..     602     711 ..     594     712 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.1
                 HHHHHHHHHHTTSSSEEEESGG CS
  Helicase_C  54 ereeileqfnkgesdvLiatdv 75 
                 ++ e+l++ ++g+ +v+iat+ 
  CCE31437.1 372 HQAEALNRLQNGQ-NVVIATST 392
                 5677888885555.89999975 PP

  == domain 2  score: 40.2 bits;  conditional E-value: 1e-13
                 HHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT.........TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C   7 lellkleeeggkilifvntidrlek.vklllekk.........gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlpr 95 
                 ++l     +g +i+ f++ ++++e  v+ +++ +         +  v  + g  ++ +r++i +++ +g+   ++at+++e G+di  +++V+  ++p+
  CCE31437.1 602 CAL---MLRGVRIIAFCRVRTQCEVlVNAIKQ-EldtlgrsecASLVMGYRGGYTAADRRRIESDMFEGRLLGIVATTALELGLDIGTLDCVMSWGFPY 696
                 444...37899999999999999766444422.12455554566777778999*************9******************************** PP

                 SHHHHHHHHTTSSST CS
  Helicase_C  96 nvtsyiqriGRtgRa 110
                 +++++ q++GR+gR 
  CCE31437.1 697 TISNLRQQSGRAGRR 711
                 **************6 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.4e-10   1.2e-06       4     148 ..     369     512 ..     366     544 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.4e-10
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B--... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke...igkkvsgdkkka.ke 98 
                 ++ +Q+ea+++l       + ++++i+  T +GK+l++   + + l+k+   +++ + p+k+l +  ++ +k+++s   +      + ++gd+ +a ++
  CCE31437.1 369 FYAHQAEALNRLQ------NGQNVVIATSTSSGKSLIYQLPVVHALEKNVLTRAMYIFPTKALAQDQKRSLKQIFSYMPNLehtLVETFDGDTPMAeRN 461
                 5689999999995......6678***************55555555566778****************9999988765444556777788888888888 PP

                 .....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...T CS
      ResIII  99 kdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..k 148
                 + ++++++++t+ ++l+  +   +ee+ +    +  ++++DE H +++   +
  CCE31437.1 462 IIREHARVIFTNPDMLHVTI-LPQEERWRSFLVNLRYVVVDELHYYNGHlgS 512
                 899*****************.555555555556666*********9996431 PP

>> CDT1  DNA replication factor CDT1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   8.1e-09   2.9e-05       2      83 ..      74     157 ..      73     261 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 8.1e-09
        CDT1   2 PskYevLlelFkaldtivsmlenrket.itfakvkkaVermsrksfeekhLaqiktvyPeayklkqekqlkef.gssgkakask 83 
                 P  ++ L+ + +al+ +  + ++rk+  +tf+ +k aVe  ++++  e+++a+i ++ Pe +++ +  +l+   + +g +++++
  CCE31437.1  74 PELFKSLQITHRALNLVFTFCCTRKHLsTTFETIKSAVETHTKRTLAEDEVAMIVALRPEGINFAYVDELMLQlEAHGSERDET 157
                 677999****************99996268999********************************8877766656666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.24s 00:00:00.98 Elapsed: 00:00:00.40
# Mc/sec: 8512.16
//
Query:       CCE31438.1  [L=867]
Description: probable nitrate reductase [NADPH] [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-58  195.7   0.3    6.6e-58  194.6   0.3    1.6  1  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain
      3e-55  186.5   0.0    4.9e-55  185.8   0.0    1.3  1  Oxidored_molyb  Oxidoreductase molybdopterin binding domain
      4e-32  110.5   0.0    6.7e-32  109.8   0.0    1.4  1  FAD_binding_6   Oxidoreductase FAD-binding domain
    8.7e-27   93.9   0.0    1.9e-26   92.8   0.0    1.6  1  NAD_binding_1   Oxidoreductase NAD-binding domain
    5.6e-19   68.1   0.0    9.8e-19   67.3   0.0    1.4  1  Cyt-b5          Cytochrome b5-like Heme/Steroid binding domai
    0.00023   21.3   0.0      0.018   15.1   0.0    2.4  2  NAD_binding_6   Ferric reductase NAD binding domain
  ------ inclusion threshold ------
      0.041   14.0   0.7        5.8    7.1   0.1    3.6  4  DUF5550         Family of unknown function (DUF5550)


Domain annotation for each model (and alignments):
>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.6   0.3   2.6e-61   6.6e-58       1     137 [.     330     478 ..     330     479 .. 0.97

  Alignments for each domain:
  == domain 1  score: 194.6 bits;  conditional E-value: 2.6e-61
                  S----S---EEEE-SS-SEEEE-S.....EEEEEEEEEE-STT--EEEEEEESSTTSS-EE-EEESSSSS---..SS...........TTS-TTS-EE CS
  Mo-co_dimer   1 ryaiydlnvnsvicspeheekvklkea.eetytikGyaysGgGrritrvevsldkGksWklaeieyeedkereakee...........sretafcwvf 86 
                  ryaiydln+nsvic p+hee+++l+ +  ++y+++GyaysGgG+ri r+ev+ld+Gk+W+la ++y+ed++r a++            +ret+fcw+f
   CCE31438.1 330 RYAIYDLNTNSVICLPAHEETISLAVDgPSSYKVQGYAYSGGGKRISRMEVTLDQGKTWRLAAVDYPEDRYRLAADGqslyggkidmwWRETSFCWCF 427
                  79*********************9987799******************************************97766789****************** PP

                  EEEEEEESS...E.EEEEEEEETT--B--SHHH--TT-------EEEEEEE CS
  Mo-co_dimer  87 weldvevselakekeilvravDealnvqPeemiwnvlgmlnnawfrvkikk 137
                  we+d+ ++el+++k+i++r++De+l+vqP+em+w+vlgm+nn+wfrv+i++
   CCE31438.1 428 WEIDIGIEELKAAKDIIARGMDESLMVQPREMYWSVLGMMNNPWFRVVIRN 478
                  ************************************************986 PP

>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.0   1.9e-58   4.9e-55       1     171 [.     126     301 ..     126     302 .. 0.93

  Alignments for each domain:
  == domain 1  score: 185.8 bits;  conditional E-value: 1.9e-58
                     SS----.G...CCC-EEEEESTCSSEEEEEHHHHHH.C-EEEEEEEEE-TTTTHHHHCHH.--SS----TTSEEEEEEEEEEHHHHHHHTTB-ET CS
  Oxidored_molyb   1 hgavpkvd...pekwrlevdglvekplslslddLka.lpavevtatlqCagnrrkelnkk.kvkglqwgagavsnaeWtGvrlrdvLekagvkkp 90 
                     hg+vp+ d   ++ w+++v+glve p+ ls+++L + +++ ++++tl Cagnrrke+n + k+kg++wg g vs+a WtGv lrd+L +a+++ +
      CCE31438.1 126 HGPVPRCDdeyVDGWTFTVEGLVEYPFVLSVRELIDeYEQLTYPVTLVCAGNRRKEQNVVrKSKGFSWGPGGVSTALWTGVMLRDLLSRAKPH-R 219
                     8999966545688*********************988*********************555*******************************7.9 PP

                     T..EEEEEEEEE-TCCTEEEEEEEHHHHC..TTT-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEESS---SH CS
  Oxidored_molyb  91 earhvvfegadeeleeskygasiplekal..eddvlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsdeesegy 171
                      ar+v+fega+  + ++ yg+si+l+++l  ++ +l+A++mng+pL+pdhG P+R+vvpg++g+rsvKwlkri v++ +s++ 
      CCE31438.1 220 GARFVCFEGAEVLP-NGCYGTSIKLNWCLdpNKGILIAHKMNGNPLHPDHGKPVRVVVPGQIGGRSVKWLKRIIVTKSPSNNW 301
                     **********9876.9*************544479*******************************************99986 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   2.6e-35   6.7e-32       2      99 .]     617     722 ..     616     722 .. 0.96

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 2.6e-35
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC..ETTCCEEEEEE.BSSTTECCEEEEEEE--......TT-HHHHHHHCS-TT-EEE CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlk..ikgeaviRsYtpissenekGelellvkvy......pgGkmsqaLdelkigdtle 89 
                    ++l ek++vs+d +ifrfkl++e+q+lglp+Gqhv++rl+    +  +iR+Ytpis+ ++kG l+ll+k+y      +gGkm+qaLd+++i  ++e
     CCE31438.1 617 ANLLEKTQVSPDSKIFRFKLDHENQTLGLPTGQHVMMRLRdsRGRAPIIRAYTPISDGEQKGWLDLLIKIYpntleqEGGKMTQALDSVPIAGSVE 712
                    6799************************************84446679************************************************ PP

                    EEEEE-SEEC CS
  FAD_binding_6  90 ikGPlGkfeY 99 
                    +kGP+GkfeY
     CCE31438.1 713 FKGPVGKFEY 722
                    *********9 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0   7.5e-30   1.9e-26       1     108 [.     742     851 ..     742     852 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 7.5e-30
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH..HSSTTEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells..lkkeeth 94 
                    mi+gG+Gi+P+++++ra++++ +d t++ l+ Gnr eed+l+r +l+e+ +++p+++++v+++s+++ +w+g++gr++++l+   ++   + +e++
     CCE31438.1 742 MICGGSGITPMLQIVRAVARDTDDLTRCLLLDGNRGEEDILCRRQLDEMVSRAPQKVRLVHCLSQPPPSWQGRTGRIDKDLIAAEAGrkHSGAEDL 837
                    9********************************************************************************9988888888999** PP

                    EEEECSHHHHHHHH CS
  NAD_binding_1  95 vyvCGppgMikavr 108
                    v++CGp  M+  vr
     CCE31438.1 838 VLLCGPSSMESSVR 851
                    **********9886 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   3.8e-22   9.8e-19       3      73 ..     517     585 ..     515     586 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 3.8e-22
                 HHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEEE CS
      Cyt-b5   3 eelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkylvGkl 73 
                 ee++++ ++++ w++i+++VYD   fl++hpGg+++i+ +aG+D+te+f ++ hse+ a+ ++ ky++G+l
  CCE31438.1 517 EEIKQQMEEDSPWFIINNQVYDGRPFLKDHPGGAASISGAAGQDVTEEFIAI-HSEN-AKAMMPKYHIGRL 585
                 8999999*********************************************.9888.8**********98 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.1e-06     0.018       5      40 ..     741     772 ..     737     806 .. 0.74
   2 ?    3.7   0.0     0.023        59     129     154 ..     828     853 ..     811     855 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.1e-06
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   5 llvagGiGitpfisilkdllkkskkealktkkikli 40 
                    ++++gG+Gitp++ i++ + + ++    + +++ l 
     CCE31438.1 741 IMICGGSGITPMLQIVRAVARDTD----DLTRCLLL 772
                    79***************9999888....55555555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.023
                    xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 129 askhknssvgvfvCGppklvkevkkl 154
                     +kh +++  v+ CGp ++   v+++
     CCE31438.1 828 GRKHSGAEDLVLLCGPSSMESSVRSI 853
                    5678888889************9987 PP

>> DUF5550  Family of unknown function (DUF5550)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.25   6.4e+02      39      85 ..      11      59 ..       7      73 .. 0.64
   2 ?    7.1   0.1    0.0023       5.8      82     105 ..     259     282 ..     251     298 .. 0.77
   3 ?   -3.8   0.0       5.1   1.3e+04      55      78 ..     725     748 ..     723     750 .. 0.81
   4 ?    1.4   0.0      0.12   3.2e+02      55      79 ..     821     845 ..     801     854 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.25
     DUF5550 39 mvrasrrsgetsavlkagrqsvsgrknst...skdlvtlgasslreergh 85
                mvr s +s   +            rknst   s+d+ tl  s   +e  +
  CCE31438.1 11 MVRKSTKSSSIAFPPSPPSTVSKSRKNSTdciSNDVSTLSPSVAEQE-DY 59
                77777777655444444444445799998666789999987655444.33 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0023
     DUF5550  82 erghplhprhgkavhlrtrgrtrg 105
                   g plhp hgk v +   g+  g
  CCE31438.1 259 MNGNPLHPDHGKPVRVVVPGQIGG 282
                 579***********9988776655 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 5.1
     DUF5550  55 agrqsvsgrknstskdlvtlgass 78 
                  g  s sg+k   s+ ++  g s 
  CCE31438.1 725 NGYCSCSGKKRRVSRFIMICGGSG 748
                 5778999***99999988888775 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.12
     DUF5550  55 agrqsvsgrknstskdlvtlgassl 79 
                     + +grk s + dlv l   s 
  CCE31438.1 821 DLIAAEAGRKHSGAEDLVLLCGPSS 845
                 5555678***********9865443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (867 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 6095.38
//
Query:       CCE31439.1  [L=1134]
Description: related to regulator of nonsense transcripts [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-58  196.7   0.0    1.5e-29  103.2   0.0    3.6  3  MIF4G     MIF4G domain
    2.8e-37  128.5   8.7    2.8e-37  128.5   8.7    2.5  2  Upf2      Up-frameshift suppressor 2


Domain annotation for each model (and alignments):
>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   3.5e-05      0.31       2     122 ..      35     165 ..      34     169 .. 0.81
   2 !   78.6   0.0   5.7e-26   5.1e-22      23     208 ..     488     654 ..     467     658 .. 0.92
   3 !  103.2   0.0   1.6e-33   1.5e-29       6     210 ..     678     878 ..     673     880 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.5e-05
                 HHHHHHHHCHTTTTHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG.....GGHHHHHHHHHHHHHHSH.HHHHHHHHHHHHHHHHHHC......- CS
       MIF4G   2 kkvkgilnklskenfevlikqllklamdddknelkevielifekaveep.....sfsplyarlcgklnsrfq.qnFrikllnklqeefekry......e 88 
                 kk++ ++++l    +   ++ +l+ + ++  +  k+v e+i+++ ++         + + ++++++l+ rf  ++F+++l   l +             
  CCE31439.1  35 KKNTAFIKRLRTAVTVATLSTFLQEIRTL--SLHKYVSEIIAACYEGLCrlkspGEIDAAVEIVSALHLRFGpTEFTEHLAWLLGKGMATPDkgalkiL 131
                 67777777777777777778888888888..89999999999999877666666*****************99******98888888877668889985 PP

                 S-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEH CS
       MIF4G  89 leneleenedgnrrrrlglvrflgelfklkmlts 122
                   ++ e++e+    r+++l+r + el+  ++l +
  CCE31439.1 132 APEAREKEEKERIIRQRALLRVIAELWLVGVLRT 165
                 5556666777777788899*********999976 PP

  == domain 2  score: 78.6 bits;  conditional E-value: 5.7e-26
                 HHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSE CS
       MIF4G  23 llklamdddknelkevielifekaveepsfsplyarlcgklnsrfqqnFrikllnklqeefekryeleneleenedgnrrrrlglvrflgelfklkmlt 121
                  ++++  + k++++ +i+ + e++ ++++ +p  +rl+++l ++++ ++ ++l+++l  ef++      +  +++d+  r rl+++r+l el k+++++
  CCE31439.1 488 AIDFCFLNSKASRNRLIKALTEIPKGRSDLLPSWSRLVATLGKYMP-DIPKGLVDYLDAEFRS-----LQRRKDKDFLGRVRLSNIRYLAELTKFGVVP 580
                 56666677889***********************************.****************.....799**************************** PP

                 HHHHHHHHHHHHHGGCCCCSCCHSCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHCSSSSHHHHHHHHHHHHH CS
       MIF4G 122 skilldclkellssltketaddppqdleeieilltllttigktlennekakkeldqffkriqkiledatrqelssrirfmlkdliel 208
                 ++++++clk  l+++ +          ++ieil++l++++g++l+++ ++ +++  f++ +q++++    ++++   r+++++ +++
  CCE31439.1 581 EHVVFHCLKVSLDDFSR----------MNIEILCNLIENCGRYLFKRSETAPRMASFLETLQRKKSV---HHIAQPERMLIENAVYY 654
                 *****************..........****************************************...99999999999998876 PP

  == domain 3  score: 103.2 bits;  conditional E-value: 1.6e-33
                 HHHHCHTTTTHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG.GGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHHHHH CS
       MIF4G   6 gilnklskenfevlikqllklamdddknelkevielifekaveep.sfsplyarlcgklnsrfqqnFrikllnklqeefekryeleneleenedgnrrr 103
                 +  + ++k n+++++kql++l++++   e  +++e +f+k+ +    +++l+  l+++l+ +++ +F+ +++++++e          +le n+  +++r
  CCE31439.1 678 LVYSDITKRNYSKILKQLRRLHWEE--GEVVTILEKVFSKPGKVKyGNIHLLGILLSALYRYHP-EFVVRVIDNVIESVSL------GLEHNDFRFYQR 767
                 566789******************9..7777888888888855335******************.****************......************ PP

                 HHHHHHHHHHHHHTTSSEHHHHHHHHHHHHHGGCCCCSC.......CHSCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHCSSSS CS
       MIF4G 104 rlglvrflgelfklkmltskilldclkellssltketad.......dppqdleeieilltllttigktlennekakkeldqffkriqkiledatrqels 195
                 r++ v++lgel+++ ml+  +++d+++++l ++             dpp+d ++i++++t l+t+g  ++ +  a k+ld f++ +q ++  +  ++l+
  CCE31439.1 768 RIAEVKYLGELYNYRMLEHPVIFDTMYKILTFGYGGPPVpgrpnpfDPPDDFFRIRLVATMLETCGMFFN-RGAAGKKLDYFLSFLQYYVHTK--PSLP 863
                 **********************************966559******************************.*********************8..**** PP

                 HHHHHHHHHHHHHHH CS
       MIF4G 196 srirfmlkdlielkk 210
                 ++i+f+++d++ l +
  CCE31439.1 864 MDIDFVVQDVYSLTR 878
                 **********98866 PP

>> Upf2  Up-frameshift suppressor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.3      0.18   1.6e+03     116     132 ..     130     146 ..     126     147 .. 0.81
   2 !  128.5   8.7   3.1e-41   2.8e-37       3     136 .]     966    1089 ..     964    1089 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.18
        Upf2 116 treqeeaekeEkeriKr 132
                 ++  e++ekeEkeri r
  CCE31439.1 130 ILAPEAREKEEKERIIR 146
                 5667999*******976 PP

  == domain 2  score: 128.5 bits;  conditional E-value: 3.1e-41
        Upf2    3 eeevvvrrk..evdpeeeeeFerelakmmaeslesrknerkkapql.dvplPmnvkkkkkkaeesesssekaaeeaeeepeaekskkvaFtLLtkkg 96  
                  ee++vv+r+  +vdpe+e eFere+a++maeslesrk+erk    l dvplP+++k+          ++ ++++++e+ep++   +k+ F+LLtkkg
  CCE31439.1  966 EESIVVTRQeeTVDPEDEVEFEREYARLMAESLESRKFERKP---LfDVPLPVRSKA----------RDPSISATQEQEPSSPIRNKMVFSLLTKKG 1049
                  466888888789999**************************6...55*****88752..........2334555566666667789*********** PP

        Upf2   97 nKqqtktlevPsdsslaqstreqeeaekeEkeriKrlvLn 136 
                  n+qqt+t+e+Psds++a++++++++a keEk+riK lvLn
  CCE31439.1 1050 NRQQTRTVELPSDSTFAVAMKTKQQAAKEEKQRIKDLVLN 1089
                  ***************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.25s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 7385.25
//
Query:       CCE31440.1  [L=547]
Description: probable chitin synthase D [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-27   94.3   4.7    3.3e-24   85.4   3.3    2.2  2  Chitin_synth_2   Chitin synthase
    9.3e-15   55.1   9.4    9.3e-15   55.1   9.4    1.9  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    1.3e-09   38.3   0.7      4e-09   36.7   0.0    2.1  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.065   13.0   0.1        1.5    8.6   0.0    2.3  2  Glycos_transf_2  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00019      0.85      23      57 ..      47      81 ..      26      90 .. 0.78
   2 !   85.4   3.3   7.5e-28   3.3e-24     193     500 ..     149     450 ..     136     470 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00019
  Chitin_synth_2 23 qlkfticlvtaysegeeglrttldslastdyddkr 57
                        +++++++y e+ e l  ++ds+ + dy+   
      CCE31440.1 47 AAPKAVIVMPCYHEEFEVLIGAVDSVVQCDYPTTC 81
                    455678999**********************9865 PP

  == domain 2  score: 85.4 bits;  conditional E-value: 7.5e-28
  Chitin_synth_2 193 kviGvspdfye..ivlmvdadtkvapdsltrlvaalv....kdpeilglcGetkiankkeswvtaiqvfeyyishhlskafesvfGsvtclPGcf 281
                     ++     + y+   +l +d+d  + + +++++v  +     +  ++l++ G  + + kk+s +t++q  ey       ++ es  GsvtclPG +
      CCE31440.1 149 RIYAEYNKLYDniFILFIDSDCVLDSACIQNFVYDMElspgNSRQMLAMTGVITSTTKKHSIITLLQDMEYIHGQLFERTVESGCGSVTCLPGAL 243
                     44445555665224799****************9997333345689************************************************* PP

  Chitin_synth_2 282 slyrikaakgadgkwvPilvspeiveeysenvvdtlhkknllllGedrylttl.llktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinstv 375
                     ++ r  a +   +     ++++        ++ d l      +lGedr+lt l ++   ++++  +  +a ckt a  t++ l+ qrrrw    +
      CCE31440.1 244 TMLRFSAFRRMAK---YYFADK-------AEECDDLFDYAKCHLGEDRWLTHLfMIGAKQRYQIQMCTSAFCKTEAVQTYRSLVKQRRRWFLGFI 328
                     *******999444...334433.......356899999999**********98356677788888999*************************** PP

  Chitin_synth_2 376 hnllelvlvrdlcGtfcfsmrfvvfieligtvvlPvaiaftlylivasilksklvpviplvllaivlGlpailivltarkle.yvawll.vylla 468
                      n  e+ +++d      +    ++ + ++   +   a++f +++i  + ++ +  + +p+ ++a+ lGl+ +l++    kl+ +  wl  + ++ 
      CCE31440.1 329 TN--EVCMLTDWRLWKRY--PVLILVRFMQNSIRTTALLFFIMVIALVTTT-AKLHDLPVGFIAVSLGLNWLLMLYFGAKLKrFKIWLYpLMFIM 418
                     99..56666665444444..4567778888999999999988777666555.777889**************99987777652556775356677 PP

  Chitin_synth_2 469 lPifnfvlPlyafwhlddfswGetrvveGekk 500
                      P+fn+   +y        +wG  r  +    
      CCE31440.1 419 NPLFNWYYMVYGILTAGSRTWGGPRADAAAAD 450
                     8*********************9997655443 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.3   2.5         4   1.8e+04     179     194 ..       7      22 ..       2      25 .. 0.47
   2 !   55.1   9.4   2.1e-18   9.3e-15       2     152 ..     163     375 ..     162     434 .. 0.71

  Alignments for each domain:
  == domain 1  score: -6.3 bits;  conditional E-value: 4
  Glyco_trans_2_3 179 llalalvlllllllaa 194
                      ++a++ +++ll++ + 
       CCE31440.1   7 WFAFWSFAILLTVPWL 22 
                      3444444455555544 PP

  == domain 2  score: 55.1 bits;  conditional E-value: 2.1e-18
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaela.sp....evaivqgpvlvm.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevg. 88 
                      il++D+D vl+  c+  +++ ++ sp     + +++g ++ +  ++++++ l+++++    ++ + v +++g+v+ ++G+ ++lr sa+++++ 
       CCE31440.1 163 ILFIDSDCVLDSACIQNFVYDMElSPgnsrQMLAMTGVITSTtKKHSIITLLQDMEYIHGQLFERTVESGCGSVTCLPGALTMLRFSAFRRMAk 256
                      9**********************8988866566777888886699************99999*****************************999 PP

  Glyco_trans_2_3  89 ............gwdgdessvsEDfdmglrl...qrkGyrvrfvpeslvkekspltlraalrQrkRwayGc.......eleklil......... 151
                                   +d    +++ED  +       +++ y++ +++++++k++   t+r  ++Qr+Rw++G        +               
       CCE31440.1 257 yyfadkaeecddLFDYAKCHLGEDRWLTHLFmigAKQRYQIQMCTSAFCKTEAVQTYRSLVKQRRRWFLGFitnevcmL-----Tdwrlwkryp 345
                      9988888888888887888*****98887774445777********************************754333220.....1222222333 PP

  Glyco_trans_2_3 152 .............................l 152
                                                   +
       CCE31440.1 346 vlilvrfmqnsirttallffimvialvttT 375
                      333333333333333333333333333322 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0     9e-13     4e-09       5     229 ..      52     325 ..      48     326 .. 0.71
   2 ?   -2.2   0.1       0.7   3.2e+03      44      67 ..     453     475 ..     446     485 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 9e-13
  Glyco_tranf_2_3   5 avlVptfneed.vlgevlesllaqeypr..vevvvvvdesd.aet.le......vaeelaaalpdvrvrvvvnarnlgst.....gksralnea 82 
                       ++ p+++ee  vl   ++s++ ++yp+  v++++  d+++ +e  ++      v ++l +++p+  ++vv ++ + ++      gk++  + +
       CCE31440.1  52 VIVMPCYHEEFeVLIGAVDSVVQCDYPTtcVHLFLSFDNEEaDELyVRtlrylgVSDGL-DDYPA-CIDVVYKSVRVTVSrfphgGKRHCQKLT 143
                      6788****99779999**********998999999885544333323333333322332.34554.2555544332222200000333333333 PP

  Glyco_tranf_2_3  83 lravk...sd........lvllvDdDtvvePdtlkrllqff.....ltpkvgavgtpvfll.nrstlvsalgalefaerhlrflaar.ralgvl 158
                      ++ ++    +        ++l++D+D+v++   ++ ++  +     +++++ a+++   +     + ++ l+++e+ + +l ++ +    ++v+
       CCE31440.1 144 FELIDriyAEynklydniFILFIDSDCVLDSACIQNFVYDMelspgNSRQMLAMTGVITSTtKKHSIITLLQDMEYIHGQLFERTVEsGCGSVT 237
                      333223331133445567*****************99988884455666999999888666257788999*****888887444444144569* PP

  Glyco_tranf_2_3 159 tlnGsgslirrevlkele.............gldp.lflltdDyelglrlrr...agfrtayvpgaavrevfpsslkayikqrnRwvy 229
                      +l G++++ r + +++               ++d  + +l++D  l+  ++    ++++++++  a++ ++  ++   ++kqr+Rw  
       CCE31440.1 238 CLPGALTMLRFSAFRRMAkyyfadkaeecddLFDYaKCHLGEDRWLTHLFMIgakQRYQIQMCTSAFCKTEAVQTYRSLVKQRRRWFL 325
                      ******************************98999999*****977766665566*******************************76 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.7
  Glyco_tranf_2_3  44 etlevaeelaaalpdvrvrvvvna 67 
                       t+++a e a++l+d +++vv+ +
       CCE31440.1 453 TTAREAAERAEKLGD-ELNVVPET 475
                      345667788999999.69999876 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.043   1.9e+02       2      23 ..      53      75 ..      52      98 .. 0.84
   2 ?    8.6   0.0   0.00033       1.5      82     166 ..     162     251 ..     155     254 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.043
                     EEEEESS-.TTTHHHHHHHHHHH CS
  Glycos_transf_2  2 vviptyNe.ektlletlesllaq 23
                     +v+p+y e  + l  +++s+++ 
       CCE31440.1 53 IVMPCYHEeFEVLIGAVDSVVQC 75
                     8*******99*********9876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00033
                      EEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS......EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHH CS
  Glycos_transf_2  82 yilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrv......generlyfkerkrslkgnlsfeigsaallrreal 166
                      +ilf+D+D++ d  +++ +v  +e   ++   +    +++ t + ++++ +      ++     f+++  s  g++++  g  ++lr++a+
       CCE31440.1 162 FILFIDSDCVLDSACIQNFVYDMEL-SPGNSRQMLAMTGVITSTTKKHSIItllqdmEYIHGQLFERTVESGCGSVTCLPGALTMLRFSAF 251
                      79******************99998.55555555555555555555555555666667777777777777777777777777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3863.88
//
Query:       CCE31441.1  [L=718]
Description: probable heat shock protein Hsp88 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.6e-166  555.0   4.7   1.6e-166  555.0   4.7    1.9  2  HSP70        Hsp70 protein
    1.3e-12   47.2   0.1    1.7e-11   43.5   0.0    2.1  2  MreB_Mbl     MreB/Mbl protein
  ------ inclusion threshold ------
      0.064   12.7   0.0        0.7    9.3   0.0    2.2  1  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
       0.26   11.7   9.1       0.84   10.1   0.0    3.7  3  FtsA         Cell division protein FtsA


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  555.0   4.7  3.6e-170  1.6e-166       1     597 [.       3     657 ..       3     659 .. 0.95
   2 ?   -2.0   0.5      0.17   7.5e+02     515     546 ..     669     700 ..     657     717 .. 0.40

  Alignments for each domain:
  == domain 1  score: 555.0 bits;  conditional E-value: 3.6e-170
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 v+G+D Gt ++vvav+++++++vi+ne +nr+tPs+v+F++k r++Ge Ak+q +tn kntv  +Krl Gr+f+dp++++e ++++  +v   ng+++v
  CCE31441.1   3 VVGVDFGTLKTVVAVARNRGVDVITNEVSNRATPSMVGFGPKSRYLGELAKTQEITNLKNTVSCLKRLAGRSFNDPDIKNEQQFVSAPLVDI-NGQVGV 100
                 79****************************************************************************************99.****** PP

                 EEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS......SCEEEEE CS
       HSP70 100 eveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd......kernvlv 190
                 ev++ g   kft++q+ am L+k+k+++ + l+ +v++ +++vPa+f+daqR+a  dA++iAGL+vlR++N++TAaal +G+ k d      k+r v +
  CCE31441.1 101 EVNYLGSteKFTSTQLIAMYLSKIKQNTATELKLPVSELCMSVPAWFTDAQRRALLDAAEIAGLKVLRLINDTTAAALGWGITKLDlpaadeKPRRVCF 199
                 *****9888****************************************************************************************** PP

                 EEEXSSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEE CS
       HSP70 191 yDlGggtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdl 289
                 +D+G++ +++Si+e++kG + vk+Ta D ++GG+dfD+alvehl++efk k+++d+ +  +a+ r + aaek Kk LS+  +++++++ie+v++ + d+
  CCE31441.1 200 VDIGHSNYTCSIVEFKKGELAVKSTAWDRNFGGRDFDRALVEHLAKEFKGKYKVDIYTHGRAMARTLAAAEKTKKILSA--NQQAPVNIESVMN-DIDV 295
                 *******************************************************************************..7899999******.**** PP

                 EEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEE CS
       HSP70 290 seklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllD 388
                 s  ++R++fe ++e++l+rt ep+e+al++a+l+k++id +++vGG +R+P+v+e+++ +f k++s t+n+Dea+a+G+A+ +++ls+ ++v+d++++D
  CCE31441.1 296 SALITRQEFEAMIEPILARTHEPLEQALAQANLTKDDIDIIEIVGGGSRVPAVKERIQAFFSKPLSFTMNADEAIARGCAFSCAILSPVFRVRDFSVQD 394
                 *************************************************************************************************** PP

                 BESS-EEEEETTTEEEEEESTTC...BSSEEEE.EEEEESSTTSS.SEEEEEEESSSSBG..GGSEEEEEEEEECESSCSTTCSEEEE...EEEEETTS CS
       HSP70 389 vtpLslgietlggvmtkliernt...tiptkks.qvfstaadnqt.aveievlqgerelv..kdnkllgsfeldgippaprGvpqieV...tfdidanG 477
                 v++  + ie ++++++ + ++ t   ++ + +  ++++++++ ++ ++++e+ + ++e +  k+n  lg+f+++g++   +G+++  V   + +i+ +G
  CCE31441.1 395 VVS--YPIEFSWDKADDIPDEETsltVFTKGNIlPSTKILTFFRKqTFDLEARYLKPEDLpgKQNPWLGRFSVKGVK--VEGQQEFMVcklKARINIHG 489
                 *99..*********9988766552215556665899999999988899999999988887335889**********9..67777766665599****** PP

                 CEEEEEEETTTCCEEEEEEECCSSSBHHHHHH...........................................HHHHHHHCHHHHHHHHHHHHHHHH CS
       HSP70 478 iltvsakdketgkeeeitieaseglseeeiek...........................................mvkdaeesaeedkkkkeaieakne 533
                 +l+v++ +  +++e e++i+ +e+ + e+ +                                            + +++ ++  edk+ +++ e+kne
  CCE31441.1 490 VLNVESGYYVEEQEVEEEIKDDEKEDGEKKDPdamdmdkkddapkktrkvkkqirkgdlpissgtssldasqktaLAEKEASMILEDKEVADTEEKKNE 588
                 *********99999999999999877777776789**************************************************************** PP

                 HHHHHHHHHHHHHHH.GGGSTHHHH....HHHHHHHHHHHCHTTSSCHHHHHHHHHHHHHHHHHHHHHH CS
       HSP70 534 aeelvyslekkleee.aekvseaek....ekvesaieeLkeeleeeekeeieakteelkkvvekiaekl 597
                 +e+++y+l++kl+e+ a+  +++ek     ++e+a+++L++e+++++k  + ak++el++++ +i+++ 
  CCE31441.1 589 LETYIYDLRAKLDEQyADLTTDEEKasikGQLEAAEDWLYDEGDDASKGVYVAKLDELRALAGPIVQRH 657
                 ***************76767777778888899****************************999999875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.17
                 HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       HSP70 515 eesaeedkkkkeaieakneaeelvyslekkle 546
                 +e a++++++k+a ea+ eae+ ++++ +  e
  CCE31441.1 669 QERAAAEQAAKKAPEAEPEAEKAAQQTVDDQE 700
                 23333333344444444444444444333222 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.028   1.2e+02       3      28 ..       3      31 ..       1      49 [. 0.75
   2 !   43.5   0.0   3.8e-15   1.7e-11      77     316 ..     116     375 ..     106     382 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.028
                EEEEEE-SSEEEEEE.TTTE..EEEEEES CS
    MreB_Mbl  3 dlgiDLGtantlvyv.kgkg..ivlneps 28
                 +g+D Gt +t+v v +++g  ++ ne s
  CCE31441.1  3 VVGVDFGTLKTVVAVaRNRGvdVITNEVS 31
                589*********96524555225666665 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 3.8e-15
                 HHHHHHHHHHT....SS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT-.....-T..TSSS-EEEEEE-SS-EEEEEEET CS
    MreB_Mbl  77 llkyfikkvkk....kkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGagl.....pv..eepsgnmvvdiGggttevavisl 164
                 l+  +++k+k+    + +l+ +++ ++vP   t+ +rrA+ +aa+ aG +   li+++ aAA+G g+     p   e+p+    vdiG     ++++ +
  CCE31441.1 116 LIAMYLSKIKQntatELKLPVSELCMSVPAWFTDAQRRALLDAAEIAGLKVLRLINDTTAAALGWGItkldlPAadEKPRRVCFVDIGHSNYTCSIVEF 214
                 44444444444221155667889999**************************************98632211333345677788****99999999876 PP

                 ..TEEEEEEEE...S-SHHHHHHHHHHHHHH....HHSEE--HHHHHHHHHHH-BSS--HHHH....EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHH CS
    MreB_Mbl 165 ..ggivtsksv...rvaGdeldeaiikyirk....kynlliGertaekikieigsavkeeeee....kmeikGrdlvtglpkevevsseevrealkepv 250
                   g++ ++++      +G ++d a+++++ k    ky++ i ++  +++  ++++a k+++      +  ++   +++ +  ++ ++ +e + +++  +
  CCE31441.1 215 kkGELAVKSTAwdrNFGGRDFDRALVEHLAKefkgKYKVDIYTHG-RAMARTLAAAEKTKKILsanqQAPVNIESVMNDIDVSALITRQEFEAMIEPIL 312
                 2255544443234379**********9986612225677774433.33444455555554443111267777777777777777777777777777777 PP

                 HHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 251 saiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtg 316
                 ++  e ++++L +  ++L++d +d  i ++GGg+ +  +++ ++  ++ p + + ++ +++a+G++
  CCE31441.1 313 ARTHEPLEQALAQ--ANLTKDDID-IIEIVGGGSRVPAVKERIQAFFSKPLSFTMNADEAIARGCA 375
                 7777777777765..689999988.58899**********************************97 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00016       0.7       1      30 [.       4     125 ..       4     369 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00016
                  EEEEE-SSEEEEEEEETTTE.EEEEEEE--.................................................................... CS
  BcrAD_BadFG   1 vGiDgGsTttkavlmdekge.vlgrgitns.................................................................... 29 
                  vG+D G+ +t +++ +++g  v+++ ++n                                                                     
   CCE31441.1   4 VGVDFGTLKTVVAVARNRGVdVITNEVSNRatpsmvgfgpksrylgelaktqeitnlkntvsclkrlagrsfndpdikneqqfvsaplvdingqvgve 101
                  8***************99999********966666666666666665555555555555555555555555555555555555555555555555555 PP

                  .......................T CS
  BcrAD_BadFG  30 .......................a 30 
                                         +
   CCE31441.1 102 vnylgstekftstqliamylskiK 125
                  555555555555555555555550 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2    0.0034        15       1      26 [.       4      26 ..       4      89 .. 0.90
   2 ?   10.1   0.0   0.00019      0.84       2      94 ..     199     372 ..     198     380 .. 0.66
   3 ?   -2.8   1.6         2   8.8e+03      84      84 ..     652     652 ..     534     702 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0034
                EEEEE-SSSEEEEEEETTEEEEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlrvi 26
                ++vD+G+ kt vava++     ++vi
  CCE31441.1  4 VGVDFGTLKTVVAVARNR---GVDVI 26
                68***************6...44444 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00019
                 EEEE-SSSEEEEEEETTEEEE.EEEES-......-HHHHHHHHHHHHT--HHHHHHHHH.HH--S--.........................EEEEEHH CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx.........................xxxxxxx RF
        FtsA   2 lvDiGagktdvavaedgalvh.lrvigv......ggngitkdiakalrtaveeAeriki.kyGsala.........................ekeigrk 67 
                  vDiG++  +++++e ++    l+v  +      gg+ +++ +++ l + ++   ++ i ++G a+a                                
  CCE31441.1 199 FVDIGHSNYTCSIVEFKK--GeLAVKSTawdrnfGGRDFDRALVEHLAKEFKGKYKVDIyTHGRAMArtlaaaektkkilsanqqapvniesV------ 289
                 69***********99954..13333333447788********777777777766666644677777766666555555555544454444440...... PP

                 HHH..................................................GGGGSTTHHHHHHHHH.T-........HH.HT CS
                 xxx..................................................xxxxxxxxxxxxxxxx.xxx......xxx.xx RF
        FtsA  68 els..................................................ggsalpnleelaeral.spk......lee.vs 94 
                                                                      ggs +p ++e ++  + +p       +e+ ++
  CCE31441.1 290 --MndidvsalitrqefeamiepilarthepleqalaqanltkddidiieivgGGSRVPAVKERIQAFFsKPLsftmnaDEAiAR 372
                 ..14555556666666667777888888888888888888888888899999999999999999999874332444443444455 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2
                 H CS
                 x RF
        FtsA  84 r 84 
                  
  CCE31441.1 652 P 652
                 0 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1346  (0.0750739); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 4860.62
//
Query:       CCE31442.1  [L=1053]
Description: probable FUN12-general translation factor eIF2 homolog [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.8e-35  120.4   1.9    7.9e-35  120.2   0.0    2.2  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.5e-19   69.4   0.0    6.8e-19   67.9   0.0    1.8  1  IF-2         Translation-initiation factor 2
      3e-08   33.4   0.3    1.8e-07   30.9   0.3    2.4  1  GTP_EFTU_D4  Elongation factor Tu domain 4
    4.1e-08   33.5   8.5    7.8e-08   32.6   0.1    3.7  3  GTP_EFTU_D2  Elongation factor Tu domain 2
    2.5e-07   30.8   0.2    9.1e-06   25.7   0.0    3.1  2  MMR_HSR1     50S ribosome-binding GTPase
    0.00027   21.2   0.0    0.00072   19.8   0.0    1.8  1  Roc          Ras of Complex, Roc, domain of DAPkinase
     0.0011   18.8   0.0     0.0011   18.8   0.0    2.5  3  ATP_bind_1   Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   1.7       4.3   1.1e+04      22      37 ..     253     268 ..     209     288 .. 0.60
   2 !  120.2   0.0   3.1e-38   7.9e-35       5     193 ..     462     672 ..     458     673 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 4.3
                 HHHHHTTSSCHHHHHH CS
    GTP_EFTU  22 rLlyktgaiskkgeka 37 
                 rLl+k ++ +k ++ +
  CCE31442.1 253 RLLKKQKEKEKIEQLK 268
                 4444444444444444 PP

  == domain 2  score: 120.2 bits;  conditional E-value: 3.1e-38
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSC.EEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEE CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiks.aaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvd 102
                  ++i+ghvD+GKt L+d++ +++ +  ++g  ++ +      + +  r+ T  + ++ ++e   k   + +iDtPGH++Fs+  +rg + +++a+lvvd
  CCE31442.1 462 ICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQ-QIGATYFPVDAIRQKTAVVnKNNEFE--FKVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVVD 557
                 69******************99999999887775.56677778777777776661566777..************************************ PP

                 TTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST...........HHHHHHHHHHHHHHHHHH..........HHHHHHHHHTTT.............TT CS
    GTP_EFTU 103 aveGvepqteevlrlalkegvpiivfiNKmDrl...........kaelkeiveevkqklsrk..........eeklekygekge.............ke 167
                 +++G epqt e +rl++++++p+iv++NK+Drl           +++l  + ++v+++++++          +                        k+
  CCE31442.1 558 IMHGLEPQTLESMRLLRDRKTPFIVALNKIDRLygwkkvdnngfQESLALQNKAVHNEFKKRldetklafaeQ----------GfnselfyenksmsKF 646
                 *******************************************999999999999999988855554444430..........134556666667779* PP

                 EEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 168 vpvvfgSalkgegvktllealvellp 193
                 v++v++Sa +geg+ ++l+ +v+l++
  CCE31442.1 647 VSLVPTSAHTGEGIPDMLKLIVQLTQ 672
                 *********************99765 PP

>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   2.7e-22   6.8e-19      15     104 ..     808     898 ..     796     899 .. 0.86

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 2.7e-22
                 CEEEEEESSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HHHHHHHHH..ST....EEEEEESSSCTHHHHHCCCCCTSEEEEESSHHHHHHHH CS
        IF-2  15 lnviikaDvqGsleAlkeaLekleseevkvkvihsgvGaitesDvelasa..sn....aiiigFnvkvskkakklaekegvkirlynvIYkliddv 104
                  +v ++a++ GsleAl ++L+++     k++v ++g+G++ ++Dv+      ++    a++++F+vkv+k+a++ a+++g+k++++++IY+l+dd+
  CCE31442.1 808 RGVSVQASTLGSLEALLDFLKDC-----KIPVANVGIGPVYKRDVMQSGImlEKapdyAVMLCFDVKVDKEAQAYADEQGIKVFTADIIYHLFDDF 898
                 4799*****************97.....7****************9986655223457************************************97 PP

>> GTP_EFTU_D4  Elongation factor Tu domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.3   7.2e-11   1.8e-07       9      86 .]     925    1016 ..     921    1016 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 7.2e-11
                   EEEEEETCCCEEEEEEEEEEEEETT-EEEETT.....E.....EEEEEEEEEETTEEESEEETT-.EEEEEEE....SS-TTTS--TT-EEE CS
  GTP_EFTU_D4    9 pgvvfrrsdpaivGvevlgGvikpgvkliked.....Gr....evGeilqiqdkgkkleeakaGq.evaisie....gkivGrqikegdily 86  
                   p  vf ++ p+++Gv+v++G++k + ++   +     G     ++G++++i++ +k++ + k+Gq +va+ ie    +++ Gr+++e d ly
   CCE31442.1  925 PVAVFNKTGPIVIGVDVVEGQLKINTPMAAVKnnpvtGLkeviSIGRVTSIERDHKQIPVCKKGQpSVAVKIEmgghQPTYGRHLEETDSLY 1016
                   5679*******************9998865431122232222369*******************96799999754334679*********98 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.5      0.85   2.2e+03      13      54 ..     246     283 ..     245     300 .. 0.75
   2 !   32.6   0.1   3.1e-11   7.8e-08       1      71 [.     699     774 ..     699     777 .. 0.92
   3 ?    3.8   0.2      0.03        76       3      44 ..     936     981 ..     935     993 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.85
                  EETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEE CS
  GTP_EFTU_D2  13 lkkGdevrilgndtskkeivtrissletfhededeavagana 54 
                  +k+ +e r+l+  + +k ++++i +l ++ + ++ a +++ a
   CCE31442.1 246 IKRREEARLLK--K-QK-EKEKIEQLKKEGKFLTKAQKEEKA 283
                  67778888844..3.22.468999999999988888777766 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 3.1e-11
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEE..........ETTSEEEEEEEESSCCSGSSTTC CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededea..........vaganaGvivaikgledaiivGd 71 
                  G ++++++ +G+l++Gd+++i+g  +     i+t i++l+t+ ++++e+          ++ a+ Gv++ ++gle a ++G+
   CCE31442.1 699 GMTIDVVLSNGILREGDRIVICGtEG----AIKTNIRALLTP-APLRELrlksqyvhnkEVKAALGVKISAPGLEGA-VAGS 774
                  7799*****************88444....4889********.*********************************8.9987 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.03
                  EEEEEEEESEEETTEEEEEEC.TCTTSEE...EEEEEEEEEEETEE CS
  GTP_EFTU_D2   3 valgrvysGtlkkGdevrilg.ndtskke...ivtrissletfhed 44 
                  v+++ v++G+lk +  +  ++ n++ + +    ++r++s+e+ h++
   CCE31442.1 936 VIGVDVVEGQLKINTPMAAVKnNPVTGLKeviSIGRVTSIERDHKQ 981
                  78999**********9999998776444489999******999985 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.6e-09   9.1e-06       2     114 .]     463     586 ..     462     586 .. 0.77
   2 ?    1.1   0.0      0.15   3.9e+02      73     107 ..     885     914 ..     864     931 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.6e-09
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSE..EEEEEE..ETTEE.................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdi..negrvk..lkgke.................ielvDtpGliegaseekglgkaflalee.adl 78 
                 ++i+G+  +GK+ L+ ++ +++++ ++  g T++i  +++ v+      +                 + ++DtpG  e      ++++   +  + +++
  CCE31442.1 463 CCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIgaTYFPVDaiR---QktavvnknnefefkvpgLLVIDTPG-HE------SFSNLRSRGSSlCNI 551
                 689*****************99999999999999954455554430...1345555666777777779*******.54......33333333333489* PP

                 EEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  79 illvvdaseeklkpldeeleelleeakkplilvlnk 114
                 ++lvvd+  ++l+p+  e  +ll+++k p+i++lnk
  CCE31442.1 552 AILVVDIM-HGLEPQTLESMRLLRDRKTPFIVALNK 586
                 ******99.7799999999999999**********8 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.15
                 HHCTSEEEEEEETTTTCSHHHHHHHHHHHHHTTSE CS
    MMR_HSR1  73 leeadlillvvdaseeklkpldeeleelleeakkp 107
                 +  ad+i +++d      k++de le+ +ee   +
  CCE31442.1 885 VFTADIIYHLFDDF---TKHMDEMLEKKKEE--SK 914
                 2348*******944...35676777776544..22 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.8e-07   0.00072       3     119 ..     464     588 ..     463     589 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.8e-07
                 EEESSTTSSHHHHHHCHCT-CCC-EE....ETTTTEEEEEEECGGSGGCT....TBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHH CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfseke....kstigvdfltkevtkikgve....ndkkvkkvklniWDtaGqerfrslhplylreaalailvydsrsse 93 
                 +++G   +GKt+ll+++ + +++e e    ++ ig++++  ++ + k+      n+ + k   l + Dt G+e f++l++   +  ++ailv+d  +  
  CCE31442.1 464 CILGHVDTGKTKLLDKIRQTNVQEGEaggiTQQIGATYFPVDAIRQKTAVvnknNEFEFKVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVVDIMHGL 562
                 699*******************988633336889998887665544432210003333444456899***************************76543 PP

                 CHHHHHHHHHHHCS.SS-EEEEEE-TT CS
         Roc  94 nlkeWlkelkkvag.kspvilvgnkiD 119
                 +  + l++++  ++ k+p+i+  nkiD
  CCE31442.1 563 EP-QTLESMRLLRDrKTPFIVALNKID 588
                 33.446666666552668999999999 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.8       3.9     1e+04     169     209 ..     255     294 ..     240     315 .. 0.53
   2 !   18.8   0.0   4.2e-07    0.0011      63     240 ..     495     672 ..     465     673 .. 0.72
   3 ?   -1.6   0.1      0.76   1.9e+03      55      96 ..     846     919 ..     842     921 .. 0.60

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3.9
  ATP_bind_1 169 lkek.lekeleffedvealslllekeeekykklaeaiaelle 209
                 lk++ +++++e ++   ++ + ++k  e  +++++++ ++l 
  CCE31442.1 255 LKKQkEKEKIEQLKKEGKFLTKAQK--EEKARNERKLQQMLA 294
                 3433333444444333222222222..333444445555444 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.2e-07
  ATP_bind_1  63 gpngalvvaleflresldwldeeleke.ed.dyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelPh 159
                 ++ ga+ + ++ +r++   ++++ e e +   +l++DtPG   + ++++ ++        +   +++ +vD     +p ++ s+     + +   ++P+
  CCE31442.1 495 QQIGATYFPVDAIRQKTAVVNKNNEFEfKVpGLLVIDTPGHESFSNLRSRGS--------SLCNIAILVVDIMHGLEPQTLESM-----RLLRDRKTPF 580
                 556899999*******9988777766644468********************........666788899999988888887777.....77889***** PP

  ATP_bind_1 160 vvvlnkfDllkeklekeleffedvealslllekee...............ekykklaeaiaelleefalvlrflplssekeesiedllslidealq 240
                 +v+lnk+D l   ++ + + f++  al++ + ++e               +     ++++    + ++   +++p s++++e+i d+l+li +++q
  CCE31442.1 581 IVALNKIDRLYGWKKVDNNGFQESLALQNKAVHNEfkkrldetklafaeqG----FNSELFYENKSMSKFVSLVPTSAHTGEGIPDMLKLIVQLTQ 672
                 ********9986566666666666555554444445556666655432221....23333333333344446678888888888888888877765 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.76
  ATP_bind_1  55 dvmed...lglgpngalvvale.............................flresldwldeelekeeddyllf 96 
                 dvm+    l+  p  a++ +++                              +++++d++ e+ ++e++++ +f
  CCE31442.1 846 DVMQSgimLEKAPDYAVMLCFDvkvdkeaqayadeqgikvftadiiyhlfdDFTKHMDEMLEKKKEESKMLAVF 919
                 55555555566777788888886666666666666666666666666555556666666666665555566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1053 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2918  (0.162753); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                       192  (0.0107089); expected 17.9 (0.001)
Passed Fwd filter:                        59  (0.00329076); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.83u 0.35s 00:00:02.18 Elapsed: 00:00:00.63
# Mc/sec: 5053.62
//
Query:       CCE31443.1  [L=1339]
Description: uncharacterized protein CPUR_05296 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-58  197.7   0.0    1.7e-57  195.1   0.0    2.0  2  MMS1_N    Mono-functional DNA-alkylating methyl methanesulfon


Domain annotation for each model (and alignments):
>> MMS1_N  Mono-functional DNA-alkylating methyl methanesulfonate N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.1   0.0   9.7e-62   1.7e-57       1     471 [.     154     657 ..     154     678 .. 0.83
   2 ?   -0.3   0.0     0.018   3.2e+02     212     232 ..     971     991 ..     949    1007 .. 0.68

  Alignments for each domain:
  == domain 1  score: 195.1 bits;  conditional E-value: 9.7e-62
      MMS1_N   1 DlLvvgsdsgelvfl..synpeknqfetvhshetlgksgsrrsqpGqylavDPkgraiavsayekvflvyslkk.keilnrealll.ssplea...rks 92 
                 +lLv++++sg  v +  +++pe++ + +v    t ++s +++ + G+ l v +++r++a ++ ++++ v +l + +ei  + +l+   +p+ +   r  
  CCE31443.1 154 QLLVLMLESGGTVYIclRWEPESG-LAFVF---TKHESPVNLTYIGHLLSVNSTSRYMAAASPDGILVVHELRPrHEIDAQYRLNGsLDPVRShriRAF 248
                 68********9888888****766.44444...446666889******************************999777776444443379998666778 PP

      MMS1_N  93 egvilsmvFldpgykeednpiialleqdrrg......kteltlyewdlglnlvrkisktsepkk......nldsganlLiplpkpgg..vlVcgetiit 177
                 +g+i +++Fl+p++++++ +ii++l++++++       t+++lyew+lg++l  +        +      + ++  +lLipl+  ++  ++V++ +i +
  CCE31443.1 249 KGIIQKVQFLYPRTGDDS-HIILILMVTKKErisaepITRMVLYEWELGQDLNHVFAME----NmgtrmpKEHRMPSLLIPLRF-STafMIVSQLEIGI 341
                 9*************9866.9999999777777999999***********9977763332....12444663233445*******.55599999999*** PP

      MMS1_N 178 ykdildqed.irkk....................swarPrrekatnfvawekldsfffllatedGdLylleiekdedsgkvvtsislkyfdtvsvasal 255
                 +k++l++++ +++                     +w+rP r+k++     ek+d   ++la+edG +  +ei+   d     + ++++  ++ ++++a+
  CCE31443.1 342 VKNSLSGAPvFETLptnppgrtrlhhglaeplwtAWSRPFRRKQYF----EKTD--IIYLAREDGAILHIEIDA-PD--LMLSVVNVGP-LDANINTAF 430
                 *********77776****************************9988....****..****************77.33..2377788999.889****** PP

      MMS1_N 256 vilksgf...LfvasefGdgqlyqieargeddknleliqtldNlaPilDfkvv.kes....dlasegqdqiytcsGagkrgsLrelRsGieveelavse 346
                 ++  + f   L++++++G g++ +++ r     +le ++ l+N++P++D+++  ++s    +++s + d ++ +sG+g +g+L++ R Gi+ ++++ + 
  CCE31443.1 431 TTAYDIFadvLVIGGDSGPGGVWKLAPRT----ELERVSVLPNWSPVVDVATSaRSSlpesNKYSLKPDMLFSASGRGMKGTLTQWRWGIQGRIGLEL- 524
                 **98877888*****************94....7******************9855578889999999****************************97. PP

      MMS1_N 347 epgspitgvWtlklssedeyd.dylvlSfvneTlvlsidgd.geveevteds.glllsvpTLaagnlgdgslvQVtpngirliradk....rvsewkpp 438
                 +pg+p++  W   ++++ + +  y +l+++++++vl++++d ++v+ ++ d+ +++l ++TL a ++++g ++QVt++ i l+ a       + +  p+
  CCE31443.1 525 DPGEPTRRSWGFFMDRTPKAHgLYGLLALPDASVVLRFSEDlAQVDSLEADRtAFDLASRTLDAYQTDSGLIIQVTERCISLMTASHnarhYLEDILPM 623
                 999***********99999888****************744136666654777***************************9988888777777787888 PP

      MMS1_N 439 ngksiiaaaangeqllvalsg.relvyfeldlie 471
                 +++++ +a + ++ +++ +++ ++ +++++  i+
  CCE31443.1 624 ENRTVENAFCGNDVVALGTTSsSSAYQIHIIAIN 657
                 889**************99996777777773222 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.018
      MMS1_N 212 fffllatedGdLylleiekde 232
                  f+l++t+dG+L  + ++k e
  CCE31443.1 971 AFLLVGTKDGRLLIISVNKLE 991
                 466666667776666665533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 9020.98
//
Query:       CCE31444.1  [L=413]
Description: uncharacterized protein CPUR_05297 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-22   78.4   0.0    8.8e-22   77.8   0.0    1.3  1  RabGAP-TBC  Rab-GTPase-TBC domain
  ------ inclusion threshold ------
       0.14   12.2   0.3         28    4.7   0.3    2.5  2  DUF2514     Protein of unknown function (DUF2514)


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   9.9e-26   8.8e-22       1     212 [.      70     279 ..      70     282 .. 0.84

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 9.9e-26
  RabGAP-TBC   1 delRgevWklllgyepevkrlkksekkqeksekeksklekseeskelsqIkkDvprtfp...es.esfknkqgqnqLeriLkaysiynpevgYcqGmnd 95 
                 delR  +W++l+g    v++   s+ +++ + ++++ +e  + + +++q+++Dv r f     + ++ + k+ +++L ++++ +  ++p + Y+qG +d
  CCE31444.1  70 DELRRLAWPVLMGL--FVDTSSCSAGSSDGDTDTDRSWERLPRHRDEEQVQLDVDRAFVyypRDrSEADMKKCKSELLSLILEVLRRHPYLCYFQGYHD 166
                 689***********..88999999**********************************977633566666666777777777777899*********** PP

  RabGAP-TBC  96 ivaplllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpl.etvlrlwDllle 193
                 i++++llv  +   a  +    +   ++rd++ ssl+ + ++l++l +ll k dpkl +h+ +++    ++a+   lt+++++++  + ++rl+D++l+
  CCE31444.1 167 ICQVFLLVLRPPWRASVVARLSI--LRIRDFMLSSLEPTTAQLRLLPDLLAKADPKLRQHIATIEP---FYALAGTLTMYAHNIQAyRDIARLFDVFLA 260
                 ******99999998665544434..79**********************************99665...89**********999977********7776 PP

  RabGAP-TBC 194 gekfvllrvalailkllee 212
                  e ++ ++v + i+ + ++
  CCE31444.1 261 REPVFPIYVFAQIVINRRN 279
                 6666677766665544444 PP

>> DUF2514  Protein of unknown function (DUF2514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0032        29       1      45 [.      77     121 ..      77     140 .. 0.84
   2 ?    4.7   0.3    0.0031        28     117     138 ..     387     408 ..     383     411 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0032
     DUF2514   1 WkqlavvlvlvaalvwGfahGrskeeaewekrwadrdaedsqakv 45 
                 W +l+ + v  +    G   G+  +++ we+   +rd+e+ q  v
  CCE31444.1  77 WPVLMGLFVDTSSCSAGSSDGDTDTDRSWERLPRHRDEEQVQLDV 121
                 77888888888888899*********************9888666 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0031
     DUF2514 117 aaraavvLadlLsraaerarel 138
                 aa+a +vLa++L r+ +  r+l
  CCE31444.1 387 AAAAVAVLAYVLRRSPSSYRYL 408
                 8999**********98887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3084.43
//
Query:       CCE31445.1  [L=676]
Description: related to SAC2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.2e-120  400.8   3.7   1.2e-119  400.4   3.7    1.1  1  Vps52     Vps52 / Sac2 family
    0.00016   20.2   5.3    0.00034   19.2   5.0    1.5  1  Sec3_C    Exocyst complex component Sec3


Domain annotation for each model (and alignments):
>> Vps52  Vps52 / Sac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.4   3.7  1.3e-123  1.2e-119       5     502 ..     157     670 ..     153     674 .. 0.92

  Alignments for each domain:
  == domain 1  score: 400.4 bits;  conditional E-value: 1.3e-123
       Vps52   5 siedyikeseniaslhnqiaaidsvleqledlLeeFqsdlssissdikklqekSnelqlrLenrkaveaklsklvddlivppelidvIiegkvneesia 103
                   edy ke +  + lh  i+a+d+vl+ +e  L +F +dl s+s di+ lqe+S +l+ rL+nrk ve +l+++v++l v+pe++ +I++g+++e  ++
  CCE31445.1 157 ILEDYQKERSTFEGLHRSITACDDVLNSVELNLIDFRNDLASVSADIESLQERSAALNRRLQNRKDVEKALGPVVEELSVSPEVVAKISTGQLDESWVK 255
                 568*******************************************************************************************97666 PP

       Vps52 104 ekleilnkkksaekdqs....vkslkalkDvkklldkLrnkalekireyivqkiktlRkpkvnvqiiqn.kLlkvkkifeFllennrklalelrqaYid 197
                    e+  +  ++  d++    ++ ++a + + +ll+kL  ka+e+ir+++v +ik+lR+p +n q iq+ ++l+++ +++Fl     +la e+ +aY++
  CCE31445.1 256 IICELDRR--TVAYDKKiisgNQPSRASAELGPLLEKLTLKAIERIRDFLVAQIKALRSPHINAQLIQQqNFLRYRDLYSFLHRRHAALAEEISRAYMN 352
                 55554433..344444445779999*******************************************99***************************** PP

       Vps52 198 TmkkiyleyfrsYirsLtklqfeeietkddLigvedtakklffsktaslkkrnkiftigkRlkilkaqldapvlvphiaeknttkyyiEalfrslelal 296
                 Tm ++y+  f +Y ++L +++ + i++ d L   ++t+     s t +  +    f++g+R++ lk   ++++l +  a++++t  y+E+ f+  +lal
  CCE31445.1 353 TMRWYYQTQFARYQQALASIKTHVIDKSDTLGHEDTTRMATVLSSTRTAGSPHDAFNLGRRIDLLK-TSNQTALSSYLADEDQTTRYLEVQFHHFNLAL 450
                 ****************************777666666667777777888899999***********.9999**************************** PP

       Vps52 297 ldnatsEYlFlkefF..avsgdqaeeifeqifektlslatkyleqlisdcyDaigvllsIriinrlqleaerrrvPvldsylnsvlillWPRFqlvldl 393
                 +dnat EY+Fl  fF  a+s  +  +if++ife t+++ ++  ++l+sd+yDa+g+ll+Ir+ ++l++e +rr+vP++d+y n+ ++llWPR q+v+d 
  CCE31445.1 451 IDNATAEYTFLASFFspALSYSHISKIFTHIFESTFEMGQTLSKTLVSDTYDALGILLCIRLNQKLAFELQRRKVPAVDNYINGTNMLLWPRLQVVMDR 549
                 ***************555899999*************************************************************************** PP

       Vps52 394 nveSlrk..adittlve........kdtrPHeltrryaeflsslvtlsvtvkeee.verllerlqreveslilrlaklf.kkkkeqlvfLinNYdlllg 480
                 ++eS+r+  +++ ++           ++ PH +t+r++++l  ++ ls +  ++e v+ +l+rl+ eve ++ + +  +  ++++  +fL nNY l+l+
  CCE31445.1 550 HCESVRQlvTNLPNKSHrsasdaakMTSAPHVVTQRFGQLLHGFLVLSAEAGDDEpVAASLHRLRSEVEAFLNKQSLSYgGDNRKSDRFLYNNYSLILT 648
                 ******94455555555999****9999*************************999****************987755426888999************ PP

       Vps52 481 vLkelsldlskeqedfqeklne 502
                 ++ +++++ ++eq++ +e l++
  CCE31445.1 649 IIGDTTGKVAVEQQKHFERLKA 670
                 ***************9999986 PP

>> Sec3_C  Exocyst complex component Sec3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   5.0   3.8e-08   0.00034      33     260 ..     169     385 ..     152     486 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.8e-08
      Sec3_C  33 eelkkdidkalkecdeldalltlysveLstlsedieyIEsqnngLQvksaNqklLykeLeellstvslsesdleaLkeaelssanglealeealeaLfk 131
                 e l + i+ + + +  ++  l  ++ +L ++s die   + +  L ++ +N+k   k L  +++ +s+s++  +++ +++l++     +++ +l++   
  CCE31445.1 169 EGLHRSITACDDVLNSVELNLIDFRNDLASVSADIESLQERSAALNRRLQNRKDVEKALGPVVEELSVSPEVVAKISTGQLDESW--VKIICELDRRTV 265
                 44555555555555566677889**********************************************************8777..788999999999 PP

      Sec3_C 132 AltaIdsdlkdlesdlgemravkerrerYekvsssFlrrlveflekkfksaekelgkdldsatkkklslekhlevlnlLliYsgLilflKevdaekfea 230
                 A+ +      +  s+ ++ ra +e     ek + + ++r+ +fl  ++k +        +     ++++++ l   ++ l+Y  L  fl    a+  e+
  CCE31445.1 266 AYDK------KIISGNQPSRASAELGPLLEKLTLKAIERIRDFLVAQIKAL--------R-----SPHINAQLIQQQNFLRYRDLYSFLHRRHAALAEE 345
                 ****......**************************************655........4.....5667777777899********************* PP

      Sec3_C 231 llqqYnasiskvYereikeffeslkkslk..........k 260
                 ++++Y++ ++ +Y++++    ++l +  +           
  CCE31445.1 346 ISRAYMNTMRWYYQTQFARYQQALASIKThvidksdtlgH 385
                 **************99876666666555533344333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 4735.27
//
Query:       CCE31446.1  [L=159]
Description: probable HYP2-translation initiation factor eIF5A.1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-28   96.8   1.8    8.4e-28   96.3   1.8    1.2  1  eIF-5a      Eukaryotic elongation factor 5A hypusine, DNA-bin
     0.0023   17.9   0.2     0.0081   16.2   0.0    1.9  2  EFP_N       Elongation factor P (EF-P) KOW-like domain
  ------ inclusion threshold ------
      0.095   12.7   0.0       0.18   11.8   0.0    1.5  1  Lipoprot_C  Lipoprotein GNA1870 C terminal like


Domain annotation for each model (and alignments):
>> eIF-5a  Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   1.8   1.4e-31   8.4e-28       1      69 []      85     154 ..      85     154 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 1.4e-31
                 --EEEEEEEEEE-SS.EEEEEETT--EEE.EEGG..GB-HHHHTT-.-TT-E..EEEEEETTEEEEEEE- CS
      eIF-5a   1 nVkrkeyqLidIqdDgflsLmdddgetkeDlklpegelgkqikekf.eegkdvlVtVlsamGeekiiavK 69 
                 nV+r+eyqL+dI+dDgflsLm++dg+tk+D+k+p+ge+g++i++ f  e+kd +V +l++mGee+++++K
  CCE31446.1  85 NVTRREYQLLDISDDGFLSLMNEDGDTKDDVKMPDGEIGEKINKLFkVEEKDTNVIILTSMGEEAAVEAK 154
                 79********************************************7788*****************987 PP

>> EFP_N  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.4e-06    0.0081       3      49 ..      25      72 ..      23      78 .. 0.86
   2 ?   -1.2   0.0      0.36   2.1e+03      45      57 ..     123     135 ..     115     135 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.4e-06
                GG--TT-EEEETTEEEEEEEEEEEEETT.S--EEEEEEEETTTS-EEE CS
       EFP_N  3 selkkGlvieidgklyvVlefehvkpGk.GqafvrvklknlrtGakve 49
                s l+k+ ++ i++ ++++++   +k Gk G a v     ++ tG+k+e
  CCE31446.1 25 SALRKNGFVVIKNRPCKIVDMSTSKTGKhGHAKVHLVALDIFTGKKLE 72
                679**********************99637788888888888888877 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.36
                 S-EEEEEEETT-E CS
       EFP_N  45 Gakvektfkagdk 57 
                 G k++k fk ++k
  CCE31446.1 123 GEKINKLFKVEEK 135
                 8899999998886 PP

>> Lipoprot_C  Lipoprotein GNA1870 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.9e-05      0.18      50     101 ..       2      53 ..       1      73 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.9e-05
                 EEEEEEEEETTEEEEEEEEEEETTTTEEEEEEE--SSGGGS-EEEEEEEEE- CS
  Lipoprot_C  50 aeyrgkafssddadgkltytidfaakqgngkiehlkspelnvelaaaelkad 101
                 ae +  +f s da+  lty ++ +a + ng +     p + v++++++    
  CCE31446.1   2 AEEHDVTFDSADAGASLTYPMQCSALRKNGFVVIKNRPCKIVDMSTSKTGKH 53 
                 6778999************************999999999999988765433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1140.18
//
Query:       CCE31447.1  [L=527]
Description: related to polymerase I core factor (CF) subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-12   45.9   1.0      5e-12   45.3   1.0    1.3  1  zf-RRN7   Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn


Domain annotation for each model (and alignments):
>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   1.0   2.8e-16     5e-12       1      32 []      10      41 ..      10      41 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 2.8e-16
     zf-RRN7  1 wekgppCgvCgcrsftlddGfyyCrrChtqeg 32
                + +g++C++Cg+r ++l dG++yC r+h++eg
  CCE31447.1 10 MPRGERCPECGSRKWYLQDGLRYCARGHQIEG 41
                579**************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3911.42
//
Query:       CCE31448.1  [L=136]
Description: probable ubiquitin fusion protein (ubiquitin / ribosomal protein) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-31  107.5   0.3    2.8e-31  107.1   0.3    1.1  1  ubiquitin       Ubiquitin family
    2.1e-31  107.6  10.1    3.1e-31  107.0  10.1    1.3  1  Ribosomal_L40e  Ribosomal L40e family
    2.1e-13   49.9   0.3      3e-13   49.4   0.3    1.2  1  Rad60-SLD       Ubiquitin-2 like Rad60 SUMO-like
    1.1e-05   25.8   0.2    3.9e-05   24.0   0.2    1.8  1  Ubiquitin_2     Ubiquitin-like domain
     0.0029   17.9   0.0     0.0043   17.4   0.0    1.3  1  Ubiquitin_5     Ubiquitin-like domain
     0.0047   16.8   0.0     0.0067   16.3   0.0    1.3  1  TBK1_ULD        TANK binding kinase 1 ubiquitin-like domain
  ------ inclusion threshold ------
      0.013   15.6   0.0      0.025   14.7   0.0    1.6  1  Rad60-SLD_2     Ubiquitin-2 like Rad60 SUMO-like
       0.03   14.9   0.1      0.034   14.7   0.1    1.3  1  DUF2407         DUF2407 ubiquitin-like domain


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.3   1.2e-34   2.8e-31       5      72 .]      15      82 ..       8      82 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 1.2e-34
                ETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin  5 tldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72
                tl+gk+itleve+sdt++++K ki++kegip++qqrLi++Gk+Led rtl++y+iq++stlhlvlrlr
  CCE31448.1 15 TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 82
                699**************************************************************986 PP

>> Ribosomal_L40e  Ribosomal L40e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0  10.1   1.4e-34   3.1e-31       1      50 []      86     135 ..      86     135 .. 0.99

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 1.4e-34
  Ribosomal_L40e   1 iepsLrqLAqKyncdKmiCrkCYArlpprAtnCrkkkCghsnnlrpKKkl 50 
                     iepsL++LA+K+ncdKmiCrkCYArlpprAtnCrk+kCgh+n+lrpKKkl
      CCE31448.1  86 IEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKL 135
                     8***********************************************96 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.3   1.3e-16     3e-13       8      72 .]      16      79 ..      14      79 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 1.3e-16
                SSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD  8 kdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72
                 +gk+++++V+++ t+ +++++ ++k+gip+ +++rLiF G++L++  t+ d+ i++++t+++v+
  CCE31448.1 16 LTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 79
                5799***************************.******************************986 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.2   1.7e-08   3.9e-05       4      80 ..       9      77 ..       6      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.7e-08
                 EEEEETTSS.SEEEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2  4 leitssltkavsserrfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80
                 ++ + + ++ +  +  +++s+ti+++K+k++   G++p+++rL +          k  +d ++L++Y+++  +++h 
   CCE31448.1  9 IYNSADTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHL 77
                 5556666666778888999*************************99........5667899**********999995 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.9e-06    0.0043      31      92 ..      18      80 ..       6      84 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.9e-06
  Ubiquitin_5 31 ekkklletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv.mvLk 92
                  k  +le++ + t +++ ski ++ g+  ++ +li  gk+le ++tL + +++++s + +vL+
   CCE31448.1 18 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLhLVLR 80
                 5566777777788899999*********************************99987546666 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     3e-06    0.0067      19      53 ..      25      59 ..      17      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3e-06
    TBK1_ULD 19 ihpyntvaifqeevakqTkiaaekQellfeghrll 53
                +++ +t++++  +++++  i++++Q l+f g++l 
  CCE31448.1 25 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 59
                67899***************************973 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.1e-05     0.025      19      88 ..      24      80 ..      13     104 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
                 EEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE- CS
  Rad60-SLD_2 19 kfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvvr 88
                 + ++++t++++k k+     +dke  p  +++ +li aGk Le+ +tl++++++        +++H+v+r
   CCE31448.1 24 EVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVLR 80
                 556667777777776.....4555533..34569****************955433......45777665 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   1.5e-05     0.034      14      67 ..      21      70 ..       7     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
     DUF2407 14 leLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslkl 67
                ++L+++  ++ t+ ++k  i ++    +   + rLI+aG+ Led  +l++   +
  CCE31448.1 21 ITLEVE--SSDTIDNVKSKIQDKE--GIPPDQQRLIFAGKQLEDGRTLSDYNIQ 70
                667777..7789999999999987..67777789**************975443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1158.29
//
Query:       CCE31449.1  [L=287]
Description: uncharacterized protein CPUR_05302 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-13   49.9  16.1    2.9e-13   49.9  16.1    1.3  1  Yip1      Yip1 domain
  ------ inclusion threshold ------
        9.7    6.5  11.7       0.48   10.7   5.1    2.1  2  DUF347    Repeat of Unknown Function (DUF347)


Domain annotation for each model (and alignments):
>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9  16.1   3.2e-17   2.9e-13       1     163 [.      75     231 ..      75     246 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 3.2e-17
        Yip1   1 llldPrevfrrlkkepp........ilrapdlallllalltlllgllaslnlgqtlasg...eevqgltlssllgaiiggylglllgllllalllhlia 88 
                 + +d+++v +r +++++        +  +pdl++++++++t++l+l++++++++ l+s    +++++++l+s  +++++gy + +++ +l+ +l ++  
  CCE31449.1  75 FDVDTSAVLQRCWAALYpranfldvLEGNPDLYGPFWIATTVVLILFLGGTISDWLSSRgtaQFAYDFRLLSGSAGLVYGYTL-FIPMVLFLALRYF-- 170
                 6799*********************************************88888888888999*******************7.7777777777777.. PP

        Yip1  89 kllg.gkgsfkqtlsvvgyallPlilgaliaillllllgtllllvgllaliWslvllylglkaahnlskkkallaa 163
                    g  + ++ ++++++gy+ l++i  a+i+             +++ +l W++v++++gl++a+ + ++ ++l a
  CCE31449.1 171 ---GsESANLLECWALYGYSNLIWIPVAIISW------------SPIEILNWTFVAVGFGLSVAFLIRNLYPVLSA 231
                 ...778999***********777666666655............3899*********************9999877 PP

>> DUF347  Repeat of Unknown Function (DUF347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.1   5.3e-05      0.48       2      42 ..     110     167 ..     110     172 .. 0.77
   2 ?   -1.9   0.5      0.44     4e+03      38      44 ..     241     247 ..     237     260 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.3e-05
      DUF347   2 fWia..iiltttlGttaGDflsq...............glglgyavgaaifgalllvv 42 
                 fWia  ++l+  lG t++D+ls                + gl y+ +  i ++l+l++
  CCE31449.1 110 FWIAttVVLILFLGGTISDWLSSrgtaqfaydfrllsgSAGLVYGYTLFIPMVLFLAL 167
                 787544899999**********666666666676776677888888888888888775 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.44
      DUF347  38 lllvvvl 44 
                 l++vvvl
  CCE31449.1 241 LIIVVVL 247
                 3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2129.68
//
Query:       CCE31450.1  [L=518]
Description: probable cytochrome P450 (involved in C-22 denaturation of the ergosterol side-chain) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-50  172.2   0.0    3.7e-50  171.0   0.0    1.4  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.0   0.0   2.1e-54   3.7e-50      46     428 ..      91     479 ..      82     500 .. 0.81

  Alignments for each domain:
  == domain 1  score: 171.0 bits;  conditional E-value: 2.1e-54
                 EEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSH...STT.THHHHHHHHHHHHHHHHHCCCCHCSEEE CS
        p450  46 vvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsf...gkl.sleelveeeaedlveklrkkagesseld 140
                 vv+ s+ +++++vl+     f++    + +a  +k   + + +f +g+ +   R+ l+  +t +     l   ee+ +++ e++v+  +++ g++  + 
  CCE31450.1  91 VVIASTRDMARKVLNSP--MFVKP-CVVDVA--HKLLGHDNWVFLDGKAHVDFRKGLNGLFTRKaleCYLpGQEEVYKKYFEKFVNVTNENDGKP--IP 182
                 56777889999999999..46663.334444..4799***************************5543444556666666666666666666666..** PP

                 THHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC..... CS
        p450 141 itellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsa..... 234
                   + + + ++ v++++++g+ ++   d      +k  ++++ +  +   +l++++ +l +  t++++k+ ++  +l ++++   + + +          
  CCE31450.1 183 FMPEFRELMCAVSCRTFVGHYMS---DA---AVKKIADDYYLI--TAALELVNFPIILPFTKTWYGKKAADM--VLLEFAKCAAKSKVRMAAGGeitci 271
                 ********************755...44...456666666433..456678888878888888888888866..8888888777777776666677666 PP

                 .........SCSSCSHHHHHHHHC..TTCTCT.....SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHC.CTTT.T-HH CS
        p450 235 .........kksrrdfldalllak..kekkge.....sklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevl.gdkr.epty 315
                          +++r   + a  +a+   e   +       +sd e+ +t++++lfa++d tss+ +w +  +a++P+v +++reE ++v  gd   e+++
  CCE31450.1 272 mdgwvsqmvQSERWREAEAKGEASdsLE---KpspllRMFSDYEISQTIFTFLFASQDATSSAATWLFQVMAQRPDVLDRVREENMKVRnGDPNaELSM 367
                 6666665553333333333333334333...23458899**************************************************766558**** PP

                 HHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-T CS
        p450 316 ddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCi 413
                 ++l++l+y++av++E LR++p+v   +p  v+k+  i + y+ipkG++vi+ +y  ++dp+v++nP+ FdpeR+ + +++  +    +l FG+Gp+ C+
  CCE31450.1 368 EQLESLTYTRAVVRELLRYRPPVL-MVPYLVKKPFPITEsYTIPKGSMVIPTTYMALHDPDVYENPDYFDPERYYSGDAE-VKGAKNYLVFGTGPHYCL 464
                 ************************.9****************************************************95.588999************ PP

                 THHHHHHHHHHHHHH CS
        p450 414 GerlArmelklflat 428
                 G+  A+++l lfl++
  CCE31450.1 465 GQVYAQLNLALFLGK 479
                 ************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3534.58
//
Query:       CCE31451.1  [L=71]
Description: uncharacterized protein CPUR_05304 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-10   40.2   1.0    9.1e-10   39.1   1.0    1.5  1  Inhibitor_I9     Peptidase inhibitor I9
     0.0096   15.9   1.1      0.011   15.7   0.1    1.6  2  Tk-SP_N-pro      Tk-SP N-propeptide domain
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.15   11.7   0.0    1.3  1  Yae1_N           Essential protein Yae1, N terminal
        0.2   11.8   0.0       0.23   11.6   0.0    1.1  1  Na_H_antiport_2  Na+-H+ antiporter family


Domain annotation for each model (and alignments):
>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   1.0     2e-13   9.1e-10       1      78 [.       3      67 ..       3      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 2e-13
                  EEEEEE-TTS-HHHHHHHHHHHHH....HHHHTT..--EEEEEEESSSSSEEEEEE-GGGHHHHHTSTTEEEEEEEEE CS
  Inhibitor_I9  1 vYIVtfkeaakaakkassheswhqsllksvlkgedsakagilysYkilfnGfavklteeqaeklrkrpeVesVepDqs 78
                  +YIVtfk++a++ + +++ ++ +             + a+i ++Y  l++Gfav+++++ + +l++++ ++++e+D  
    CCE31451.1  3 SYIVTFKDDASEDQIKAAKKQAVE------------QGAKITHEYS-LIKGFAVEINDDAISTLEANENIKAIEKDGQ 67
                  6*******9999996666666666............489*******.9***************************965 PP

>> Tk-SP_N-pro  Tk-SP N-propeptide domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.6e-06     0.011      24      64 ..       3      46 ..       2      49 .. 0.76
   2 ?   -2.2   0.1      0.95   4.3e+03      16      26 ..      52      62 ..      50      63 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.6e-06
                 EEEEEESSHHHHHHHHHHHHH...CT-EEEEE-SSSSEEEEEEE CS
  Tk-SP_N-pro 24 stiivFknkadkekavkvlei...lGakikyeYkiIPAlAvklk 64
                 s i+ Fk+ a  ++   +++     Gaki +eY  I   Av+++
   CCE31451.1  3 SYIVTFKDDASEDQIKAAKKQaveQGAKITHEYSLIKGFAVEIN 46
                 57999*999877754444443123599***************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.95
                 TS-TT-EEEEE CS
  Tk-SP_N-pro 16 klndneeisti 26
                  l+ ne+i+ i
   CCE31451.1 52 TLEANENIKAI 62
                 56778888766 PP

>> Yae1_N  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.4e-05      0.15       7      39 .]      10      42 ..       9      42 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.4e-05
      Yae1_N  7 aeGkeqglqeGfdeGyqeGaqlGlelGqilGvl 39
                +++ e +  + + +  ++Ga++  e   i+G++
  CCE31451.1 10 DDASEDQIKAAKKQAVEQGAKITHEYSLIKGFA 42
                688999999**********************96 PP

>> Na_H_antiport_2  Na+-H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.2e-05      0.23      47      87 ..      22      62 ..      12      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.2e-05
  Na_H_antiport_2 47 asGlgggaevAlsyallGafAvaisksgltdllvkkvikll 87
                     ++ +++ga++   y l+ +fAv i+   + +l +++ ik++
       CCE31451.1 22 KQAVEQGAKITHEYSLIKGFAVEINDDAISTLEANENIKAI 62
                     47899*********************999998888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 516.88
//
Query:       CCE31452.1  [L=454]
Description: related to branched-chain alpha-ketoacid dehydrogenase kinase, mitochondrial precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-44  149.5   0.0    9.3e-44  149.1   0.0    1.2  1  BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehy
      3e-11   43.8   0.0    2.6e-10   40.8   0.0    2.3  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.1   0.0     1e-47   9.3e-44       2     162 .]      71     243 ..      70     243 .. 0.92

  Alignments for each domain:
  == domain 1  score: 149.1 bits;  conditional E-value: 1e-47
  BCDHK_Adom3   2 vslrqlvqfgekpst.gtllksaqflreelpirlAhrvkelenlPdglvenpsvkkvkdwYaqsfeellelpkpe........leenekftelLekik 90 
                  ++l++l+++g+ p + ++ll sa+f+++ lpirlA+r+++l+nlP+++v+np++++++++Y++s++ ll ++++         l+++ +ft++L +++
   CCE31452.1  71 LRLADLMRHGRPPISeKSLLLSANFTLSLLPIRLARRIQALRNLPFIVVSNPNISRIYNNYLHSLSILLPYWHAAsegrpistLDDEIEFTNVLGELV 168
                  789******998866799*****************************************************776335677788*************** PP

  BCDHK_Adom3  91 krHddvvttlaqGvlelkekrkrkqidseiqsFLdrfymsRIgiRmLieqhiaLteqsks.......kkepsdyvGiId 162
                   +H++++++la+G+le+++        se+++FLd+++++RIg+R++ eqhiaL+ q+ s        +e++ y+G+Id
   CCE31452.1 169 ATHTNTIPILAKGLLECRKY----ISASEVTRFLDEHLRARIGTRLIGEQHIALHLQHFSpedsstsCHEHPPYIGVID 243
                  ******************88....67899***************************988899999995666689***97 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   2.9e-14   2.6e-10       4     109 ..     288     448 ..     286     450 .. 0.72

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 2.9e-14
                 HHHHHHHHHHHHHHHHHHS.TTT...EEEEEEEE..................EE..........TEEEEEEEESSSSSTTHHHT....GTCSTTCH... CS
   HATPase_c   4 krLrqiisnlvdNavkfat.kag...eieveika..................se..........ddlvisveDnGiGipkedlk....klfekfsq... 63 
                  +L+ i+ +l++Na ++ t ++g    + v+i +                  s+            ++i+++D G Gi++e l+        +f++   
  CCE31452.1 288 MHLEYILTELLKNAFRA-TvESGcrnPVVVTIAPephlkdeppgnaalitksSQgrgiggntnaPGVTIRIRDRGGGISPEVLPniwsY---SFTTfsd 382
                 68999***********9.423333335566666666666555555554444411555556666789******************66663...4444444 PP

                 ....................HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEE CS
   HATPase_c  64 ....................ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftftlp 109
                                     +++  ++  g G+Gl ++++++e +gG i+v+s  g Gt+++++++
  CCE31452.1 383 eydfpgsgssgadglsaistASTGGSSIAGLGYGLPLSRAYAEYFGGGISVQSLYGWGTDVYLRIK 448
                 777777777777666667655555555799999*****************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3510.41
//
Query:       CCE31453.1  [L=1781]
Description: probable chitin synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.5e-228  758.5   0.1   5.4e-228  757.9   0.1    1.2  1  Chitin_synth_2   Chitin synthase
      5e-15   55.4   0.5    3.6e-12   46.2   0.1    3.3  3  Cyt-b5           Cytochrome b5-like Heme/Steroid binding doma
    1.5e-14   53.6   1.5    9.5e-14   51.1   2.0    2.0  2  DEK_C            DEK C terminal domain
    5.1e-14   52.7   2.8    5.1e-14   52.7   2.8    1.9  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    3.1e-11   43.6   0.0    2.3e-10   40.8   0.0    2.2  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    1.3e-07   30.2   0.0    2.4e-07   29.4   0.0    1.4  1  Myosin_head      Myosin head (motor domain)
    0.00047   20.0   0.0       0.13   12.1   0.0    2.6  2  Glycos_transf_2  Glycosyl transferase family 2
     0.0014   18.1   0.0     0.0055   16.2   0.0    1.9  2  Glyco_transf_21  Glycosyl transferase family 21
  ------ inclusion threshold ------
       0.17   11.9   0.0        1.5    8.9   0.0    2.4  2  TIG_plexin       TIG domain


Domain annotation for each model (and alignments):
>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  757.9   0.1  2.7e-231  5.4e-228       2     524 ..    1050    1557 ..    1049    1559 .. 0.98

  Alignments for each domain:
  == domain 1  score: 757.9 bits;  conditional E-value: 2.7e-231
  Chitin_synth_2    2 stiiaksvaalqlidkrslefqlkfticlvtaysegeeglrttldslastdyddkrklllvvcdGlikGsGndkstPeivldllkdavspked 94  
                      ++i+ k+v+al++++kr++  q+kf+ic+v+ay+ege++lr++ldsl++++yd+krkl++v+cdG+i+G+Gnd++tP+ivld+l+  v+pk d
      CCE31453.1 1050 AVILIKFVSALRFTSKRRPSPQDKFVICQVPAYTEGEDSLRKALDSLTALQYDNKRKLIFVICDGVIVGQGNDRPTPKIVLDILG--VDPKVD 1140
                      578899*******************************************************************************..****** PP

  Chitin_synth_2   95 veplsyvavaeGskrhnkakvyaGfyeyeddstvpeekqqrvPlivvvkvGtpseasekkPGnrGkrdsqiilmsflekvtfdermteleyel 187 
                      + +l +++v+ Gs + n++kvy+G+ye+e+  +v       vP++vvvkvG++se+s++kPGnrGkrdsqi+lmsfl++v++ + m +le+e+
      CCE31453.1 1141 PPALPFKSVGPGSEQLNYGKVYSGLYEFEG--NV-------VPYVVVVKVGKESEQSKSKPGNRGKRDSQILLMSFLNRVHHRAPMNPLELEM 1224
                      *****************************8..66.......9*************************************************** PP

  Chitin_synth_2  188 fkkikkviGvspdfyeivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankkeswvtaiqvfeyyishhlskafesvfGsvtclPGc 280 
                      f++i ++iGv+p+ ye++lmvdadt v  dsl+rlv+a++++++i g+cGet+++n ++sw+t+iqv+ey+ishhl+kafes+fGsvtclPGc
      CCE31453.1 1225 FHQINNIIGVDPELYEYLLMVDADTSVSEDSLNRLVSACANNAKIAGICGETSLENDEKSWWTMIQVYEYFISHHLAKAFESLFGSVTCLPGC 1317
                      ********************************************************************************************* PP

  Chitin_synth_2  281 fslyrikaakgadgkwvPilvspeiveeysenvvdtlhkknllllGedrylttlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwins 373 
                      f++yr+++ ++  g  +P+++s+ ++ ey+   vdtlh+knll lGedrylttl+ k+fp++  +f+++a+ckt aP++++vllsqrrrwins
      CCE31453.1 1318 FTMYRLRTVDK--G--KPLIISDAVIREYAICDVDTLHQKNLLSLGEDRYLTTLMTKNFPHMAFKFIQDAQCKTAAPESWSVLLSQRRRWINS 1406
                      ********999..6..9**************************************************************************** PP

  Chitin_synth_2  374 tvhnllelvlvrdlcGtfcfsmrfvvfieligtvvlPvaiaftlylivasilksklvpviplvllaivlGlpailivltarkleyvawllvyl 466 
                      t+hnl+el++++++cG++cfsmrf+vfi+l gt++lP++ +++ +li ++++++   p+i+++lla+v+Gl+a++++l+ r++++++w+++y+
      CCE31453.1 1407 TIHNLVELMRLKEMCGFCCFSMRFIVFIDLFGTIILPATCVYLGWLIYRVATHQGQFPMISIILLAAVYGLQALVFILK-RQWQHIGWMIIYI 1498
                      *******************************************************************************.************* PP

  Chitin_synth_2  467 lalPifnfvlPlyafwhlddfswGetrvveGekk.kkaageaegefdsskivlkrfeef 524 
                      +a+Pi++fvlP+y+fw+ d+fswG+tr+v Gek+ k+++  +++ +d+ +i+l+r++++
      CCE31453.1 1499 IAFPIYSFVLPIYSFWNQDNFSWGNTRIVIGEKGnKQVVAVDDEGYDPRSIPLQRWDDY 1557
                      *********************************945566677889*************9 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.1   1.8e-15   3.6e-12       2      60 ..     804     871 ..     803     926 .. 0.77
   2 !    5.6   0.0    0.0085        17      10      30 ..     939     959 ..     928    1019 .. 0.69
   3 ?   -2.5   0.0         3   5.9e+03      40      55 ..    1719    1734 ..    1711    1763 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 1.8e-15
                 HHHHTTTECTTEEEEEETTEEEECTTTC.CCST.....TCSHHHHTTTTSBBHHHHHHTT...GGCHH CS
      Cyt-b5   2 leelskhngkndlwvairgkVYDvskfl.skhp.....GgesailkyaGkDateafksvv...hsekd 60 
                 ++e++ h+g++d wv+i+gkVYD++kf+ ++h      + +++++ +aG D++ +f  ++   +++  
  CCE31453.1 804 RDEVKTHQGEDDFWVSIHGKVYDITKFWrQQHSdtnvkTTADVMQPLAGLDMSPYFMPPLteaCKGLG 871
                 689*************************99999***********************988766666554 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0085
                 CTTEEEEEETTEEEECTTTCC CS
      Cyt-b5  10 gkndlwvairgkVYDvskfls 30 
                 +++  w ++ + VYD++++ +
  CCE31453.1 939 NQQHPWAMYGNMVYDLTDYFH 959
                 34499*************984 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3
                  HTTTTSBBHHHHHHTT CS
      Cyt-b5   40 lkyaGkDateafksvv 55  
                  ++yaG D t++++++ 
  CCE31453.1 1719 RTYAGADDTAIVEAIQ 1734
                  689******9999884 PP

>> DEK_C  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.1   2.2e+03      39      52 ..    1397    1410 ..    1394    1412 .. 0.85
   2 !   51.1   2.0   4.8e-17   9.5e-14       2      54 .]    1725    1778 ..    1724    1778 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
       DEK_C   39 LsekKafIkalIde 52  
                  Ls+++ +I+++I++
  CCE31453.1 1397 LSQRRRWINSTIHN 1410
                  89**********86 PP

  == domain 2  score: 51.1 bits;  conditional E-value: 4.8e-17
       DEK_C    2 sdeeirkaireiLreaDLdtvTkkkvReqLeeklgvdL.sekKafIkalIdeil 54  
                  +d  i++ai+++L e+DLdtvTkk+vR+ +e++l+++L  e++ f +++Id++l
  CCE31453.1 1725 DDTAIVEAIQSVLGEVDLDTVTKKQVRALVEQRLQTELvGERRTFMDRQIDREL 1778
                  6889*********************************637***********986 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   2.1       6.1   1.2e+04     161     191 ..     732     779 ..     726     790 .. 0.56
   2 !   52.7   2.8   2.5e-17   5.1e-14       2     175 ..    1242    1457 ..    1241    1511 .. 0.73

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6.1
  Glyco_trans_2_3 161 sllwsalplhlallllfslla....................lalvllllll 191
                      + +w++++++l++++ ++ll+                        ll++l+
       CCE31453.1 732 RRAWVGVVWALTFWIPSPLLRyvgrmrrpdvrmawreklvlV---LLIFLI 779
                      556777777777777776655577777777777777764431...322221 PP

  == domain 2  score: 52.7 bits;  conditional E-value: 2.5e-17
  Glyco_trans_2_3    2 illlDaDtvlppdclreiaaela.spevaivqgpvlvm.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalq...... 85  
                        l++DaDt +++d+l+++++ +a + ++a ++g +  +   ++w++ ++++++ ++h  +  + + +g+v+ ++G  ++ r++ ++      
       CCE31453.1 1242 LLMVDADTSVSEDSLNRLVSACAnNAKIAGICGETSLEnDEKSWWTMIQVYEYFISHHLAKAFESLFGSVTCLPGCFTMYRLRTVDkgkpli 1333
                       689********************447********99984579***********99*******************************888888 PP

  Glyco_trans_2_3   86 .......evggwdgdes.......svsEDfdmglrlqrkG...yrvrfvpeslvkekspltlraalrQrkRwayGc.....el......... 146 
                              e + +d d +       s++ED ++   l++k+   + + f+ ++++k+  p ++   l Qr+Rw+        el         
       CCE31453.1 1334 isdavirEYAICDVD-TlhqknllSLGEDRYL-TTLMTKNfphMAFKFIQDAQCKTAAPESWSVLLSQRRRWINSTihnlvELmrlkemcgf 1423
                       887777744455533.23556667*****999.7788888799********************************75544311233333444 PP

  Glyco_trans_2_3  147 ....eklillvrllgylgsllw.salplhlalll 175 
                           ++ i  ++l+g + ++++ ++l ++++ + 
       CCE31453.1 1424 ccfsMRFIVFIDLFGTIILPATcVYLGWLIYRVA 1457
                       3333333334455544444433133444443222 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       0.5     1e+03       4      39 ..    1075    1113 ..    1073    1133 .. 0.73
   2 !   40.8   0.0   1.2e-13   2.3e-10      79     228 ..    1224    1404 ..    1220    1406 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.5
  Glyco_tranf_2_3    4 lavlVptfneed.vlgevlesllaqey..prvevvvvvd 39  
                       +++ Vp++ e +  l++ l+sl a +y   r  ++v++d
       CCE31453.1 1075 VICQVPAYTEGEdSLRKALDSLTALQYdnKRKLIFVICD 1113
                       6789*****99868999******9998545555666654 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 1.2e-13
  Glyco_tranf_2_3   79 lnealravk......sdlvllvDdDtvvePdtlkrllqff.ltpkvgavgtpvflln.rstlvsalgalefaerhlrflaarralg.vltln 161 
                       ++++++++       ++++l+vD+Dt v+ d+l rl+ +  + +k++ + +   l+n +++++++ +  e+ + h+   a+   +g v++l 
       CCE31453.1 1224 MFHQINNIIgvdpelYEYLLMVDADTSVSEDSLNRLVSACaNNAKIAGICGETSLENdEKSWWTMIQVYEYFISHHLAKAFESLFGsVTCLP 1315
                       444444433555666789*********************955555555555556677577*********9999999999999999868**** PP

  Glyco_tranf_2_3  162 Gsgslirrevlkele...................gldp.lflltdDyelglrlrragfrtay..vpgaavrevfpsslkayikqrnRwv 228 
                       G ++++r + ++  +                   ++++ l +l++D  l+  + ++  ++a+    +a + ++ p+s++ +  qr+Rw+
       CCE31453.1 1316 GCFTMYRLRTVDKGKpliisdavireyaicdvdtLHQKnLLSLGEDRYLTTLMTKNFPHMAFkfIQDAQCKTAAPESWSVLLSQRRRWI 1404
                       ********************************97677789999***887777777666666444************************7 PP

>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.2e-10   2.4e-07     186     271 ..     180     270 ..     175     332 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.2e-10
                  TT--SBHHHHHHHHCSTH.HHHHHTT--TCCGSTTTTTTSSSSB....TTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSS CS
  Myosin_head 186 keERnyHiFYqllagase.eekkelkledvkdyaylsqsgeltv....dgiddseefketkkaldilglseeeqkeifrivaailhlGnie 271
                  ++ R++ +FY+ll +as+  e++ l l+ +++y+ l++sg+++     ++ dd+++  + ++al+ +g++ +++++ ++++a++l+lGn  
   CCE31453.1 180 AGYRAFDVFYYLLTSASTpAEREFLGLKPPSTYTLLARSGTYSPpaylPTADDAASADDFRQALKDIGIKGSSHRNFISTLAGLLKLGNTL 270
                  5679********99887615677789**************8764333399**************************************953 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0099        20       4      34 ..    1079    1110 ..    1077    1115 .. 0.83
   2 !   12.1   0.0   6.4e-05      0.13      81     163 ..    1240    1323 ..    1234    1329 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0099
                       EEESS-.TTTHHHHHHHHHHHGGCCEEEEEEE CS
  Glycos_transf_2    4 iptyNe.ektlletlesllaqdpypdfeiivv 34  
                       +p+y e e+ l+++l+sl a +++ + ++i+v
       CCE31453.1 1079 VPAYTEgEDSLRKALDSLTALQYDNKRKLIFV 1110
                       8*******************956666666655 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 6.4e-05
                       SEEEEEESSEEE-TTHHHHHHHHHHH..TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHC.CCCCCSTTCSTCCCEEEE CS
  Glycos_transf_2   81 dyilflDaDdepdpdwleklvealekd.gadvvlgqrprifgetdeiernkrvgenerlyfkerkr.slkgnlsfeigsaallrr 163 
                       +y+l +DaD+ +++d l +lv a  ++   ++++g +   ++e+ +++  +  +e  +  +  + + sl+g++++  g+++++r 
       CCE31453.1 1240 EYLLMVDADTSVSEDSLNRLVSACANNaKIAGICGETSLENDEKSWWTMIQV-YEYFISHHLAKAFeSLFGSVTCLPGCFTMYRL 1323
                       79********************999952334556666666666666665544.45555555544441566688888888888885 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.8e-06    0.0055      21     115 ..    1229    1328 ..    1212    1331 .. 0.78
   2 ?   -2.8   0.0       1.9   3.7e+03     126     172 ..    1358    1404 ..    1357    1405 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.8e-06
  Glyco_transf_21   21 nllqaleaakydllvisDsdvrvkpdyLeellaaled.pkvglVts.lpvgsdakglaaal.eaafl..ntlagvlqaklsglgfavGksma 107 
                       n + +++   y++l++ D+d+ v++d L++l+ a +   k++ +++ +++  d+k++++ + +  ++    la+++ + ++ + +  G + +
       CCE31453.1 1229 NNIIGVDPELYEYLLMVDADTSVSEDSLNRLVSACANnAKIAGICGeTSLENDEKSWWTMIqVYEYFisHHLAKAFESLFGSVTCLPGCFTM 1320
                       6677889999*************************987788888886888999999999764333343233355555556788888888888 PP

  Glyco_transf_21  108 lrreaLea 115 
                       +r +++++
       CCE31453.1 1321 YRLRTVDK 1328
                       88777765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.9
  Glyco_transf_21  126 LAeDyalgkllraa..GlkvvlspapiaqtsvprrsslrallaRqlrWa 172 
                       L eD  l++l++++  ++ + + +++ ++t++p+  s++ ll++  rW 
       CCE31453.1 1358 LGEDRYLTTLMTKNfpHMAFKFIQDAQCKTAAPE--SWSVLLSQRRRWI 1404
                       7788889998888877777777777778888875..9**99**999996 PP

>> TIG_plexin  TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.73   1.5e+03      46      82 ..     127     161 ..     118     164 .. 0.75
   2 ?    8.9   0.0   0.00076       1.5      10      75 ..     358     427 ..     350     437 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.73
  TIG_plexin  46 vtCdtPkpeelppipegkdhvtvkLsirsketgkdla 82 
                 ++C tP   + p+  +    vt++Ls+  + tg++la
  CCE31453.1 127 IRCVTPYNPSTPR--QAALGVTLNLSLTGNLTGASLA 161
                 89****9977777..5557778888887777777766 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00076
  TIG_plexin  10 tseltltvenlpal..se..klkCvFgdleeseatvsdnkvtCdtPkpeelppipegkdhvtvkLsirsk 75 
                 ++++++tv ++p++  ++  +++C+F+d++  +a++ +++v+    +++ + ++++  + v  +L i+s+
  CCE31453.1 358 EDTVSITVMEVPQIslGKalSMRCIFDDSQGINAEMVEDGVSMLLASSSVMREMQQAVSDVGPDLGIMSG 427
                 459**********987333688********99**999999998888888888877777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1781 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.00u 0.27s 00:00:01.27 Elapsed: 00:00:00.45
# Mc/sec: 11764.89
//
Query:       CCE31454.1  [L=1868]
Description: probable chitin synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.5e-249  828.3   1.8   3.5e-249  827.8   1.8    1.2  1  Chitin_synth_2   Chitin synthase
    4.2e-73  246.7   0.0    4.9e-72  243.2   0.0    2.0  1  Myosin_head      Myosin head (motor domain)
    7.5e-18   64.5   0.2    1.7e-12   47.3   0.0    3.5  2  Cyt-b5           Cytochrome b5-like Heme/Steroid binding doma
    2.5e-16   59.3   0.1    1.5e-15   56.8   0.3    2.2  2  DEK_C            DEK C terminal domain
    1.7e-11   44.4   3.4    1.7e-11   44.4   3.4    1.9  1  Glyco_trans_2_3  Glycosyl transferase family group 2
      9e-11   42.1   0.1    2.1e-09   37.6   0.1    2.3  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    1.1e-05   25.3   0.0     0.0077   16.1   0.0    2.5  2  Glycos_transf_2  Glycosyl transferase family 2
     0.0071   15.9   0.0       0.16   11.5   0.0    2.3  2  AAA_25           AAA domain
  ------ inclusion threshold ------
       0.02   15.3   0.8       0.13   12.6   0.0    2.5  3  AAA_16           AAA ATPase domain
       0.05   13.5   0.0       0.11   12.3   0.0    1.5  1  RsgA_GTPase      RsgA GTPase
       0.05   14.0   0.0       0.24   11.8   0.0    2.2  2  RNA_helicase     RNA helicase
      0.092   13.0   0.0       0.34   11.2   0.0    2.0  1  AAA_22           AAA domain
      0.093   13.2   0.0       0.28   11.7   0.0    1.8  1  ABC_tran         ABC transporter
       0.14   11.9   0.1       0.43   10.4   0.1    1.8  1  AAA_29           P-loop containing region of AAA domain
       0.15   11.6   0.0       0.33   10.4   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
       0.18   10.7   0.0       0.34    9.8   0.0    1.4  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN


Domain annotation for each model (and alignments):
>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  827.8   1.8  3.1e-252  3.5e-249       2     527 .]    1216    1723 ..    1215    1723 .. 0.99

  Alignments for each domain:
  == domain 1  score: 827.8 bits;  conditional E-value: 3.1e-252
  Chitin_synth_2    2 stiiaksvaalqlidkrslefqlkfticlvtaysegeeglrttldslastdyddkrklllvvcdGlikGsGndkstPeivldllkdavspked 94  
                      s+i++k+ aalq++ k+ +e+ +kf++c+++ay+e+ee+lr+++ds+a+++yddkrkll+vvcdG+i+G+Gnd++tP+ivld+l+  vs++ d
      CCE31454.1 1216 SIIAFKFFAALQFGGKNVPENLDKFVMCQIPAYTEDEESLRRAIDSAARMRYDDKRKLLVVVCDGMIIGQGNDRATPRIVLDILG--VSETVD 1306
                      78999********************************************************************************..****** PP

  Chitin_synth_2   95 veplsyvavaeGskrhnkakvyaGfyeyeddstvpeekqqrvPlivvvkvGtpseasekkPGnrGkrdsqiilmsflekvtfdermteleyel 187 
                      +epls+++++eG+k+hn++kvy+G+ye+++  ++       vP++v+vk+G+pse+   +PGnrGkrdsq+ilm+fl++v+++ +m++le+e+
      CCE31454.1 1307 PEPLSFESLGEGMKQHNMGKVYSGLYEVQG--HI-------VPFLVIVKIGKPSEVA--RPGNRGKRDSQMILMRFLNRVHYNLAMSPLELEM 1388
                      *****************************8..77.......**************99..********************************** PP

  Chitin_synth_2  188 fkkikkviGvspdfyeivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankkeswvtaiqvfeyyishhlskafesvfGsvtclPGc 280 
                      +++i+++iGv+p+fye ++++dadt vapds+tr+v+a+++d++++++cGet ++n+k+s++t+iqv+eyyish+lskafes+fGsvtclPGc
      CCE31454.1 1389 YHQIRNIIGVNPTFYEFMFQIDADTVVAPDSATRMVSAFIDDTRLIAVCGETALTNAKSSFITMIQVYEYYISHNLSKAFESLFGSVTCLPGC 1481
                      ********************************************************************************************* PP

  Chitin_synth_2  281 fslyrikaakgadgkwvPilvspeiveeysenvvdtlhkknllllGedrylttlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwins 373 
                      fs+yri+aa++  g  +P++vs+e+ve+ys+++vdtlh+knll+lGedrylttlllk ++k+kt+++ +a+++t+aPd+++v+lsqrrrwins
      CCE31454.1 1482 FSMYRIRAAET--G--KPLFVSREVVEAYSTIRVDTLHMKNLLHLGEDRYLTTLLLKFHSKYKTKYLFNAHAWTIAPDSWQVFLSQRRRWINS 1570
                      **********9..6..9**************************************************************************** PP

  Chitin_synth_2  374 tvhnllelvlvrdlcGtfcfsmrfvvfieligtvvlPvaiaftlylivasilksklvpviplvllaivlGlpailivltarkleyvawllvyl 466 
                      tvhnl+el+ + +lcG++cfsmrfvvfi+l++tvv+Pv+ia++ yliv + +k ++vpv +++l+++++Gl+ai+++l+ rk+e+v+w+++y+
      CCE31454.1 1571 TVHNLMELIPMAQLCGFCCFSMRFVVFIDLLSTVVQPVTIAYIAYLIVLVGTKGTVVPVTAFILIGAIYGLQAIIFILR-RKWEMVGWMILYV 1662
                      *******************************************************************************.************* PP

  Chitin_synth_2  467 lalPifnfvlPlyafwhlddfswGetrvveGekkkkaageaegefdsskivlkrfeefere 527 
                      la+P+f+f lPlyafwh+ddf wG+trvv+Ge++kk++ ++eg+fd+ +i++k++ee++ e
      CCE31454.1 1663 LAIPVFSFGLPLYAFWHMDDFNWGNTRVVAGEQGKKVVISDEGKFDPDSIPRKKWEEYQAE 1723
                      **********************************************************975 PP

>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.2   0.0   4.3e-75   4.9e-72      71     676 ..      84     768 ..      82     769 .. 0.90

  Alignments for each domain:
  == domain 1  score: 243.2 bits;  conditional E-value: 4.3e-75
                  HHHHHHHHHHHHTSEEEEEEESSTTSSHHHHHHHHHHHHHHHSSSSSCTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSS... CS
  Myosin_head  71 iadeayrslledkenqsilisGEsGAGKteatKkvlqylasvaeskekveeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgk... 165
                  +a++a+ +l +++enq+i+  GEsG GK     ++l+   +  ++++    + l++k+  +  +++++   kt     +s+ G + e+++d++++   
   CCE31454.1  84 MAERAWLRLGHRSENQAIVFLGESGSGKSTVRSHLLT---ALLDKSS----TPLSNKLSMAAYVFDTLTTTKTATTPTASKSGLYYELQYDTSATtnp 174
                  6899999*********************877666654...3334443....48999***********************************9876233 PP

                  .EEEEEEEEECE-GGGGT---TT--SBHHHHHHHHCSTHHHHHHTT--....TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHH CS
  Myosin_head 166 .iagakietYLLEksRvvkqakeERnyHiFYqllagaseeekkelkle....dvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeif 258
                   + g+k+    LE+sR+    ++ERn+Hi Y++lag+s+ ek++l l+      k+++yl + ++l+v gi+d+e f+  k al+ l +  ++ +ei 
   CCE31454.1 175 iLLGGKLLDHRLERSRIADVPTGERNFHILYYILAGTSSAEKTHLGLDdgvdGSKRWKYLGHPTQLKV-GINDAEGFQLFKTALKKLEFPRSDVAEIC 271
                  357*******************************************9954434789******999998.9**************************** PP

                  HHHHHHHHHCTSSEEEECTTSSE................EESSHHHHHHHHHHHTS-HHHHHHHHHSEEEEETTEEEEEE-BHHHHHHHHHHHHHHHH CS
  Myosin_head 259 rivaailhlGniefkkeakdeqa................vledeeklekaaellgvdaeelekalvkrriktgkevvskalnveqaevardalakaiy 340
                  +i+aailh+G++ef+++++++++                ++++++ l+++a+ lgv++ el+++l  ++ +++ke v+  l+   a+   + la+++y
   CCE31454.1 272 QILAAILHIGQLEFESTNNTSATgddsggfshdggntstTVKNKDVLAIIAAFLGVSVGELQSTLGYKTKTVHKERVTILLDPVGARGHANELARTLY 369
                  ****************998876678889999999999877778888**************************************************** PP

                  HHHHHHHHHHHHHHHTTSS-S-SEEEEEEEEE-B---..SSB-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSS CS
  Myosin_head 341 erlFdwlverinkslekkkeekksfiGvLDiaGFEif..eknsFEqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekk 436
                  + l  w++e +n+++++ +e+  + i ++D  GF     +  + +ql  n + E + +l  ++ +    e    E++++    + +dn + +  + k+
   CCE31454.1 370 SLLVAWILESVNQKVCAPEEQIVNTISIVDFPGFAQQsaTRSTLDQLLNNAATEAIYNLALHNFFDRKAEMLESEEVSVAPTSY-FDNSDAVKGLLKS 466
                  **********************************765116789*****************************************.9999999877777 PP

                  STSHHHHHHHHHTSTTS-HHHHHHHHHHHH.TTSTTEEETTS...........TTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSH CS
  Myosin_head 437 plGilslLdeecllpkatdetfleklvkaf.skhakfeksrl...........kkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkk 522
                   +G+ls+Ld++++    td+++le l k+f  k++  e  +            ++  a+F+++H+Ag+v+Y ++g +e n + ++ dl++l++s+k++
   CCE31454.1 467 GNGLLSILDDQTRRS-RTDMQLLESLRKRFeGKNPAIEVGSAtaklpgsnfltENAMASFTVRHFAGEVDYPIKGLIEENGEVVSVDLLNLFNSTKSE 563
                  9**********9865.69************7677755443333467888888888899**************************************** PP

                  HHHHHCCSHCH......................................................B--.........CSSSECCCCCSBHHHHHHHHH CS
  Myosin_head 523 llaelfkeeek......................................................eakaeakksekkkkkkkkkkkfktvgskfkesl 566
                  ++ +lf ++                                                        ++  +++ks k++k ++k +  + ++ +f +sl
   CCE31454.1 564 FVGRLFGQDVLqtvphpnekktvmqatisskpmrapsvmsrkggrgrglpsqrrpqapplfdagnNNVPDEAKSPKASKVANKASIDQGASGQFLSSL 661
                  ******98665789**********************************************987764445556666667777777788999******** PP

                  HHHHHHHCT..SEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHH.HHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS.SSSHHHHHHHHHHHTT CS
  Myosin_head 567 aeLmktles..tnphfvRCikpnekkkakkldeslvleqlrclGvle.girirraGfpnRitfeefvqrYkllakkelkkllkedakkaveailkele 661
                   +L k++++  tn+ fv C+kpn+++ a+++d++ v +q+++ G+ e + r+r a f+    f ef+ +     ++++   l +++++ +e+ ++e +
   CCE31454.1 662 DNLQKAVTDpgTNTYFVFCLKPNDRRIANQFDSKCVRTQVQTFGIAEiSQRLRSADFSLFLPFGEFLGMA---DSDTI---LVGSERERAEMTIEERR 753
                  *******96558999*******************************945699***********9998753...34444...457899999******** PP

                  S-GCGEEECSSEEEE CS
  Myosin_head 662 ldkeeykiGktKiFf 676
                    ++e ++G+t +F+
   CCE31454.1 754 WPSNEAQVGSTGVFL 768
                  ************997 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   1.5e-15   1.7e-12       1      61 [.     959    1029 ..     959    1085 .. 0.83
   2 !   12.0   0.0   0.00015      0.17       2      53 ..    1095    1168 ..    1094    1193 .. 0.63

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 1.5e-15
                  EHHHHTTTECTT..EEEEEETTEEEECTTTC.CCST....TCSHHHHTTTTSBBHHHHHHTT...GGCHHH CS
      Cyt-b5    1 tleelskhngkn..dlwvairgkVYDvskfl.skhp....GgesailkyaGkDateafksvv...hsekda 61  
                  t++els h+gk+  +++v+irg+V D+ +f+  ++p    +++++il+yaGkD++++f+++v   +++ d+
  CCE31454.1  959 TAAELSGHDGKDgnSAYVSIRGHVIDLGSFVnTHYPpeplVSKKSILNYAGKDVSALFPVQVsalCQGVDG 1029
                  689******88889*****************88999*************************9999998876 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00015
                  HHHHTTTECTTEEEEEETTEEEECTTTCCCST......................TCSHHHHTTTTSBBHHHHHH CS
      Cyt-b5    2 leelskhngkndlwvairgkVYDvskflskhp......................GgesailkyaGkDateafks 53  
                  +e +sk +gkn+   +i  kVYD+s+++++                           +++++ aG+D+t++ ++
  CCE31454.1 1095 PEYVSKLAGKNQKIAIIGSKVYDLSSYMDNRRllrakpgeqvnddpkladfldsKVTDLFRTKAGQDITKIWNA 1168
                  7889*******99999************6654455555555555555555555533355555555555555555 PP

>> DEK_C  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.4   2.6e+03      37      53 ..    1559    1575 ..    1558    1576 .. 0.84
   2 !   56.8   0.3   1.4e-18   1.5e-15       1      54 []    1811    1864 ..    1811    1864 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.4
       DEK_C   37 vdLsekKafIkalIdei 53  
                  v Ls+++ +I+++++++
  CCE31454.1 1559 VFLSQRRRWINSTVHNL 1575
                  569**********9875 PP

  == domain 2  score: 56.8 bits;  conditional E-value: 1.4e-18
       DEK_C    1 psdeeirkaireiLreaDLdtvTkkkvReqLeeklgvdLsekKafIkalIdeil 54  
                  psd+ + ++ir+iL++aDL+tvTkk + ++Le +++v L  k+a+I+++ +++l
  CCE31454.1 1811 PSDDALLAEIRDILKTADLMTVTKKGIKQELERRFDVPLDAKRAYINSATEALL 1864
                  8**********************************999**********988765 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   3.4   1.5e-14   1.7e-11       5     189 ..    1409    1617 ..    1406    1673 .. 0.75

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 1.5e-14
  Glyco_trans_2_3    5 lDaDtvlppdclreiaa.elaspevaivqgpvlvm.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalq......... 85  
                       +DaDtv+ pd+  + ++ ++++ +  +v+g +  + +++++++ ++++++ ++h+ +  + + +g+v+ ++G  ++ r++a++         
       CCE31454.1 1409 IDADTVVAPDSATRMVSaFIDDTRLIAVCGETALTnAKSSFITMIQVYEYYISHNLSKAFESLFGSVTCLPGCFSMYRIRAAEtgkplfvsr 1500
                       8**************9945556777777777776646799******************************************9999999988 PP

  Glyco_trans_2_3   86 .........evggwdgdes.......svsEDfdmglrl..qrkGyrvrfvpeslvkekspltlraalrQrkRwayGc..eleklillvrllg 157 
                                +v       +       +++ED ++   l  +   y++ +   +  ++  p++++ +l Qr+Rw+     +l++li    +++
       CCE31454.1 1501 evveaystiRVD------TlhmknllHLGEDRYLTTLLlkFHSKYKTKYLFNAHAWTIAPDSWQVFLSQRRRWINSTvhNLMELI----PMA 1582
                       555444333222......13444455*****888776644455588888877779*********************532222222....446 PP

  Glyco_trans_2_3  158 ylgsllwsalplhlallllfslla...lalvllll 189 
                       +l  ++++++ + +++ ll+ ++    +a+++ l+
       CCE31454.1 1583 QLCGFCCFSMRFVVFIDLLSTVVQpvtIAYIAYLI 1617
                       67777777777766666666655533322222222 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.16   1.8e+02       4      49 ..    1241    1295 ..    1239    1321 .. 0.76
   2 !   37.6   0.1   1.9e-12   2.1e-09      79     228 ..    1388    1568 ..    1384    1570 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.16
  Glyco_tranf_2_3    4 lavlVptfneed.vlgevlesllaqey.pr..vevvvvv.....desdaetleva 49  
                       + + +p++ e++  l++ ++s+++  y +   + vvv++     +++d++t + +
       CCE31454.1 1241 VMCQIPAYTEDEeSLRRAIDSAARMRYdDKrkLLVVVCDgmiigQGNDRATPRIV 1295
                       5788******99899*********9996332344444447777777888877654 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 1.9e-12
  Glyco_tranf_2_3   79 lnealravk......sdlvllvDdDtvvePdtlkrllqff..ltpkvgavgtpvfllnrstlvsalgalefaerhlrflaarralg.vltln 161 
                       +++++r++       +++   +D+Dtvv Pd+  r++ +f   t+ +++ g   +++  s+++++ +  e+++ h    a+   +g v++l 
       CCE31454.1 1388 MYHQIRNIIgvnptfYEFMFQIDADTVVAPDSATRMVSAFidDTRLIAVCGETALTNAKSSFITMIQVYEYYISHNLSKAFESLFGsVTCLP 1479
                       6777777333445557788899**********8888888853333344444444667899****************999**98888678888 PP

  Glyco_tranf_2_3  162 Gsgslirrevlkele...................gldp.lflltdDyelglrlrr..agfrtayvpgaavrevfpsslkayikqrnRwv 228 
                       G +s++r +  +  +                   ++++ l +l++D  l+  l +   +++t+y+  a  ++  p+s++ +  qr+Rw+
       CCE31454.1 1480 GCFSMYRIRAAETGKplfvsrevveaystirvdtLHMKnLLHLGEDRYLTTLLLKfhSKYKTKYLFNAHAWTIAPDSWQVFLSQRRRWI 1568
                       9999999998887779999999999999****98788899******9999999999999*****************************7 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0057       6.4       4      33 ..    1245    1276 ..    1243    1281 .. 0.77
   2 !   16.1   0.0   6.9e-06    0.0077      79     167 ..    1402    1491 ..    1393    1493 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0057
                       EEESS-.TTTHHHHHHHHHHH.GGCCEEEEEE CS
  Glycos_transf_2    4 iptyNe.ektlletlesllaq.dpypdfeiiv 33  
                       ip+y e e+ l+++++s++++ ++++++ ++v
       CCE31454.1 1245 IPAYTEdEESLRRAIDSAARMrYDDKRKLLVV 1276
                       9********************54444444444 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.9e-06
                       -SSEEEEEESSEEE-TTHHHHHHHHHHH..TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHH CS
  Glycos_transf_2   79 tgdyilflDaDdepdpdwleklvealekd.gadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrreale 167 
                         ++++ +DaD++++pd   ++v a+ +d +  +v+g +  ++ ++ +i+  + +++    +  +   sl+g++++  g+++++r +a+e
       CCE31454.1 1402 FYEFMFQIDADTVVAPDSATRMVSAFIDDtRLIAVCGETALTNAKSSFITMIQVYEYYISHNLSKAFESLFGSVTCLPGCFSMYRIRAAE 1491
                       56778889*********999999877665388899***************9988777777777777788899*************99875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00014      0.16      19      60 ..      84     125 ..      75     139 .. 0.87
   2 ?    1.4   0.0      0.18     2e+02      37      83 ..     207     251 ..     205     265 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
      AAA_25  19 ppprrwlvkgllpagelallaGapgtGKttlaldlalavatG 60 
                 +++r wl  g++ ++  +++ G +g+GK+t+ ++l  a++  
  CCE31454.1  84 MAERAWLRLGHRSENQAIVFLGESGSGKSTVRSHLLTALLDK 125
                 67899*****************************99998754 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.18
      AAA_25  37 llaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdse 83 
                 +laG + + Kt l ld +++ ++ ++ lg  +p+q kV + +aE+ +
  CCE31454.1 207 ILAGTSSAEKTHLGLDDGVDGSKRWKYLG--HPTQLKVGINDAEGFQ 251
                 89***************************..479**********976 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012      0.13      21      51 ..      95     125 ..      85     179 .. 0.81
   2 ?   -0.3   0.1       1.1   1.3e+03      72     161 ..     403     494 ..     370     502 .. 0.55
   3 ?   -3.3   0.0       8.9     1e+04     115     144 ..    1251    1281 ..    1234    1281 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd 51 
                 +++ +++++ GesG+GKs++  +ll+al ++
  CCE31454.1  95 RSENQAIVFLGESGSGKSTVRSHLLTALLDK 125
                 4444899******************999987 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.1
      AAA_16  72 laqalareellrqllde......aesaeleawrekleeala.avpelagaea....srllellkrllallsrderplvlvlDdlqwadeaslqllaaLl 159
                 +aq+ a+++ l qll++             a + ++++ ++   +e          ++ ++   +   ll++ +  l+ +lDd  +   +++qll++L 
  CCE31454.1 403 FAQQSATRSTLDQLLNNaateaiY----NLALHNFFDRKAEmLESEE----VsvapTSYFDNSDAVKGLLKS-GNGLLSILDDQTRRSRTDMQLLESLR 492
                 555555556666666663322210....1111111122111211222....123335555553333355666.55699999999999999999999997 PP

      AAA_16 160 rl 161
                 ++
  CCE31454.1 493 KR 494
                 76 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 8.9
      AAA_16  115 easrllellkrll.allsrderplvlvlDdl 144 
                  ++++l++++ +++ +++  +++ lv+v+D +
  CCE31454.1 1251 DEESLRRAIDSAArMRYDDKRKLLVVVCDGM 1281
                  4588999999999888888666699999975 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0001      0.11      90     122 ..      89     121 ..      75     157 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
                  HHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  90 leelkellkdktsvlvGqSGvGKStLinallpe 122
                  + +l ++ +++ +v++G+SG GKSt+  +ll  
   CCE31454.1  89 WLRLGHRSENQAIVFLGESGSGKSTVRSHLLTA 121
                  5567777889***************99988875 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00021      0.24       1      33 [.     101     133 ..     101     150 .. 0.86
   2 ?   -3.2   0.0       9.9   1.1e+04      41      83 ..    1790    1830 ..    1777    1836 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00021
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkds 33 
                   i++ G+sg GKSt+  +L +all+k+ ++ +++
    CCE31454.1 101 IVFLGESGSGKSTVRSHLLTALLDKSSTPLSNK 133
                   7899*******************9997665554 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9.9
  RNA_helicase   41 ddfwdgYtgqevvvidDfgqvkdeenpsdlaelirlvsstpyp 83  
                    + ++++Y g ++   dD+   +++  +  lae+  + +++ ++
    CCE31454.1 1790 QLHMSQYGGSQFFNPDDMVGLPSD--DALLAEIRDILKTADLM 1830
                    669999999999999**9999988..55888887777777665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0003      0.34       4      38 ..      97     139 ..      94     190 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0003
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee........e 38 
                 + + +v  GesG+GK+t+   ll  l   ++            
  CCE31454.1  97 ENQAIVFLGESGSGKSTVRSHLLTALLDKSSTPLsnklsmaaY 139
                 6789999**************9999864444333655554442 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00025      0.28      10      33 ..      97     120 ..      94     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
                 TTSEEEEEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllag 33 
                 e++ ++++Ge+G+GKSt+ + l+ 
  CCE31454.1  97 ENQAIVFLGESGSGKSTVRSHLLT 120
                 67899************9876655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00038      0.43      23      38 ..      99     114 ..      91     130 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00038
      AAA_29  23 gatlltGpsGsGKSTl 38 
                 +a+++ G+sGsGKST+
  CCE31454.1  99 QAIVFLGESGSGKSTV 114
                 37899**********7 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0003      0.33      28      71 ..      93     136 ..      78     150 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0003
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsa 71 
                  + ++++ +++ G++G+GK+++ ++ll++l +++ ++l+ ++s 
  CCE31454.1  93 GHRSENQAIVFLGESGSGKSTVRSHLLTALLDKSSTPLSNKLSM 136
                 56678999*****************8888887777777666654 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0003      0.34       8      42 ..      91     125 ..      85     144 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0003
  TrwB_AAD_bind   8 plpkeretqhilivGttGsGKtqalekllrairar 42 
                     l +++e+q i+++G  GsGK+++ ++ll+a+  +
     CCE31454.1  91 RLGHRSENQAIVFLGESGSGKSTVRSHLLTALLDK 125
                    57899************************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1868 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.08u 0.37s 00:00:01.45 Elapsed: 00:00:00.49
# Mc/sec: 11558.78
//
Query:       CCE31455.1  [L=1138]
Description: uncharacterized protein CPUR_05308 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     4e-101  338.8   0.0   7.5e-101  337.9   0.0    1.5  1  Npa1      Ribosome 60S biogenesis N-terminal
    1.4e-59  201.1   0.4    6.2e-59  199.0   0.1    2.4  2  NopRA1    Nucleolar pre-ribosomal-associated protein 1
     0.0041   17.1   0.2         18    5.5   0.0    4.4  4  Arm       Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> Npa1  Ribosome 60S biogenesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.9   0.0  1.3e-104  7.5e-101       2     339 .]      99     443 ..      98     443 .. 0.96

  Alignments for each domain:
  == domain 1  score: 337.9 bits;  conditional E-value: 1.3e-104
        Npa1   2 seifqlWsyaaqtnneellsavlallalllrllsshldfreeglelikriLqk.hlkllyrnlss..skeslisptLrLlteivsfdggalarevlrsf 97 
                 ++i+++Ws+a q+n+e ++sav + lalll ++s++l++ ++g+++++++Lq+ +lk + +nl+s  sk ++isptLrLl+e+v+fdgga+a+ ++r++
  CCE31455.1  99 HDIMEMWSFAIQVNDEDVISAVAVNLALLLHIISDSLRLVPYGNGICQTLLQEpQLKAIAKNLASekSKGFIISPTLRLLREAVCFDGGAFAKRFVRAR 197
                 79***************************************************************88889***************************** PP

        Npa1  98 dfslkvlpklltprkrekkekkedkkkkpsiRtlfirFllsflssgnpslkkdlLeqkkilsalfkglkeDppetvqevLetlkekvlkdkkikrstkl 196
                   +++ l ++l++ +    e++ed k k siR++++rFlls+l++ +++ +++lL+qk++ls+l+  +k+Dpp++v e+Le lk ++l+d+ki+r+ k 
  CCE31455.1 198 TYTFTALGRNLEMGYL--GENQEDTK-KTSIRANAVRFLLSCLKYLHSEGRRELLSQKDLLSHLTYMMKNDPPHLVLELLESLKVHILMDSKIPREVKF 293
                 ****************..66888888.8*********************************************************************** PP

        Npa1 197 klfnesaleklaslysrdeeedqdeedekeekesvaelvhefLlalctspgaGicfpdkgwypreasdeksae.........gsevtvnk..ksfkvyN 284
                 + fn+++l++l+sly++++ + +++e      e ++e++hefL+ +ct+++ Gi++p +g+yp+ea+de sa          +  ++  k  + ++vyN
  CCE31455.1 294 RAFNTKMLMRLLSLYTYAHAAADTDER-----ELISEKAHEFLTYACTDSTSGILYPYRGLYPKEADDEFSALsaqrvsdqeTGDPWEGKlrDGVPVYN 387
                 ********************8655544.....79***********************************98879999999975556666688999**** PP

        Npa1 285 klLlnllktLkpwederqqeLllkilkacPeLvapyl.ketslslePrlsstWign 339
                  +L+++  +L+pw++ ++++Ll++i++a+PeL+++y+ ++ s+++eP+ls+tWig+
  CCE31455.1 388 FVLSEFASKLRPWSSLKHCKLLVAIFTAAPELISDYFyNNQSFTFEPKLSMTWIGY 443
                 *************************************99***************96 PP

>> NopRA1  Nucleolar pre-ribosomal-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.76   4.5e+03       3      30 ..     488     515 ..     487     550 .. 0.68
   2 !  199.0   0.1     1e-62   6.2e-59       4     201 .]     898    1089 ..     896    1089 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.76
      NopRA1   3 llvlsLssedeeirrlAlavlskllasl 30 
                 +lv++Ls +++ +   A+ +l + l++l
  CCE31455.1 488 VLVRCLSPQSHLTSFFATRILVAALEKL 515
                 5778888777777777777777777666 PP

  == domain 2  score: 199.0 bits;  conditional E-value: 1e-62
      NopRA1    4 lvlsLssedeeirrlAlavlskllasleesssfkektqlllllselletllaskseeeekeprlpslialflaralriltnPehplYekvnrfllsr 100 
                  l++ L+se+ ++r+ Al+ + k++ +++ess +++k q++lllse+ e++++  ++ +     +ps +++f+++ l++l nP hpl++kvn +l+++
  CCE31455.1  898 LIRLLTSEHINLRKEALTSILKMAMQIKESS-YEDKMQIWLLLSEIAESSKPLVDQGP-----VPSALTAFAIHGLDVLKNPLHPLFPKVNSYLTRS 988 
                  6899***************************.****************9998877777.....********************************** PP

      NopRA1  101 peldlndvPlfysllyssseedeeykkersWiLrlladGlrtksDlkllkrrrvfelllslynsplldaklrelilelllratrieggattLitrsG 197 
                  p +  ++vPl +++l+ ++++d++y++e++W+L++l d+l+t+ Dl +++++r+fe llsl ++p+l+++lr+++++l++rat+ie g+ttL+tr+G
  CCE31455.1  989 PVWGPDKVPLAHDILHGTPSDDDKYYTELTWLLTYLLDSLKTPFDLGVFHKKRWFEKLLSLGSNPYLRTALRTRLFRLIYRATCIEAGSTTLVTRFG 1085
                  ************************************************************************************************* PP

      NopRA1  198 llsW 201 
                  l+sW
  CCE31455.1 1086 LISW 1089
                  **** PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.02   1.2e+02       5      30 ..     221     246 ..     217     250 .. 0.79
   2 ?   -2.4   0.0      0.97   5.8e+03      16      27 ..     657     668 ..     654     669 .. 0.68
   3 ?    2.5   0.0     0.027   1.6e+02       6      24 ..     686     704 ..     686     709 .. 0.82
   4 !    5.5   0.0     0.003        18      17      35 ..     898     916 ..     896     921 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.02
                 HHHHHHTTHHHHHHHHTTTSSHHHHH CS
         Arm   5 kdavieaGavppLvrLLssedeevqe 30 
                 k++ i+a+av+ L+++L+  + e ++
  CCE31455.1 221 KKTSIRANAVRFLLSCLKYLHSEGRR 246
                 67779************966666555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.97
                 HHHHHTTTSSHH CS
         Arm  16 pLvrLLssedee 27 
                 +L+++L s+d e
  CCE31455.1 657 ALLKMLCSGDSE 668
                 566666699987 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.027
                 HHHHHTTHHHHHHHHTTTS CS
         Arm   6 davieaGavppLvrLLsse 24 
                 ++v ++ a++pL++ L+++
  CCE31455.1 686 QVVTDSKALKPLIQALTCM 704
                 56779***********954 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.003
                 HHHHTTTSSHHHHHHHHHH CS
         Arm  17 LvrLLssedeevqeeAawA 35 
                 L+rLL+se+ ++++eA++ 
  CCE31455.1 898 LIRLLTSEHINLRKEALTS 916
                 9***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 7937.00
//
Query:       CCE31456.1  [L=507]
Description: related to 3-phytase A precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-61  207.9   0.0    4.4e-61  207.3   0.0    1.2  1  His_Phos_2     Histidine phosphatase superfamily (branch 2)
  ------ inclusion threshold ------
      0.085   12.8   0.2       0.24   11.4   0.0    1.8  2  DUF485         Protein of unknown function, DUF485
        0.1   12.9   0.0       0.18   12.1   0.0    1.4  1  Peptidase_C10  Peptidase C10 family
       0.24   11.4   2.9       0.16   11.9   0.9    1.7  2  DUF2633        Protein of unknown function (DUF2633)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.3   0.0   9.9e-65   4.4e-61       2     383 .]     118     469 ..     117     469 .. 0.92

  Alignments for each domain:
  == domain 1  score: 207.3 bits;  conditional E-value: 9.9e-65
                 EEEEEEEEE--SBB-SHHHHHHHHHHHHHHHH.........HHCHHTGCCGGGGT.........--SSSTTS.B-HHHHHHHHHHHHHHHHHCHTCCHT CS
  His_Phos_2   2 LksvvvviRHGdRtPkqkvkksvtspiflsllkkhkeKlkqlktalekkghfpgtyrkveveklqlilkwggelthaGrkqaeelGrqfrqrYplgLlr 100
                 ++++ v++RHG+R+P+ ++ +++ ++  ++           +  ++  ++ + ++          + l+  + lt +Gr++++++G qf +rY+ +L r
  CCE31456.1 118 VTFASVLSRHGSRYPTAQKSHEYHKLVERIRR---------NVRTYGRGYGWIRNF--------EYPLGEND-LTATGRNELFQSGVQFFKRYD-NLGR 197
                 67899**********************99988.........7999999999*9743........66666666.*********************.**** PP

                 TSS--TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTTSHHTCHHHCHHHTGGHCHHHHCHCCCCC CS
  His_Phos_2 101 lhltykdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaakdlldeakkklkelltegaeacpafewpikvakrvdelvkylkedm 199
                 +      +++r+s+++Rv++SA+ f++G+++++g             +++   + +++e+k      ++ ++ +c +fe+   ++++ ++ ++ + ++ 
  CCE31456.1 198 KT---VRPFVRTSGSDRVVKSAELFIRGFFSAKG----------NDNRKHMGRMLIIPEDKGVK---NPLHHGNCGTFEE-GLHSETLVKPINAWLKIW 279
                 97...69***************************..........55566666788888844333...3335678******.****************** PP

                 HHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHH...HHCT-TTGGGCTH..HCHHHHHHHHHHHHHHHC........TTTCCCCHHHHHHHHHHHHH CS
  His_Phos_2 200 deniakrleqlcpgesnllakerwdklercfyekn...kfdiskicdlydemkydalhnrylkdleelyklakvipqEygigpeeklkiGllllnpllk 295
                 +++i++rl++ +pg+ nl+ +e++ ++++c +++    k+ +s +c+l+++   +++ ++y+++l+++  +        g+g++++ ++G++++n+l++
  CCE31456.1 280 ATPIMNRLNKKMPGA-NLTLEETVYMMDLCPFNTVastKKVPSSFCRLFSK--REWQSYDYYQSLRKWHTY--------GPGNPMASTQGVGYVNELIA 367
                 **************8.***********************************..*****************9........******************** PP

                 HHCTSSSEECCS.........CCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS......TTT..HCCCS-CT-EEEEEEEEETCTTTEEEEE CS
  His_Phos_2 296 kilndlqrtree.........atperhvrlrlyfthdshiysllnaLglpeelagedslaa.....ldrlsaspelpymsqivfelyedssekkfyvrl 380
                 ++++ +++++++         at++  ++l+++fthd++++++ +aLgl ++++ +  +++      +++sas+ +p+++++++e++ +++++k  vr+
  CCE31456.1 368 RLTKTPVKDNTTtdadldsnpATFPLGRSLYADFTHDNTLMTVYSALGLWTNDTVLPTNHVvpakkANGYSASWTVPFAARMYVEKMDCRDDQKDLVRV 466
                 **********99***********************************99888887777777899*************************99999***** PP

                 EEC CS
  His_Phos_2 381 lls 383
                 l++
  CCE31456.1 467 LVN 469
                 997 PP

>> DUF485  Protein of unknown function, DUF485
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.3e-05      0.24      12      40 ..      45      73 ..      35      78 .. 0.91
   2 ?   -2.5   0.1       1.1     5e+03       1      16 [.     135     150 ..     135     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.3e-05
      DUF485 12 krrrfafpltaiflvvYfgfvllvafapd 40
                 r+rf ++ltai+l++ f+++l +afa++
  CCE31456.1 45 HRSRFRTILTAIMLLAAFLLLLGIAFAQQ 73
                699***********************975 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
      DUF485   1 qaspkFqeLvrkrrrf 16 
                 q+s ++++Lv++ rr 
  CCE31456.1 135 QKSHEYHKLVERIRRN 150
                 578999***9998875 PP

>> Peptidase_C10  Peptidase C10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.1e-05      0.18       1      49 [.      94     142 ..      94     172 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.1e-05
                    --SSSGGGSSS-B-TT-B----HHHHHHHHHHHHHT..--SB-SS-EEEE- CS
  Peptidase_C10   1 WgqsapYnrlcpkyngkrtltGCvatAmaqilkyyk..wpkkgsgeqsytl 49 
                    Wgq +pY++ +p+  +++++ GC  t  a +l+ +   +p++++++ +y+ 
     CCE31456.1  94 WGQYTPYSAALPTFVESEVPRGCKVT-FASVLSRHGsrYPTAQKSH-EYHK 142
                    ***********************765.7788887743477775554.4443 PP

>> DUF2633  Protein of unknown function (DUF2633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.9   3.5e-05      0.16       2      23 ..      46      67 ..      45      71 .. 0.94
   2 ?   -3.5   0.0       2.4   1.1e+04      26      33 ..     410     417 ..     409     418 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.5e-05
     DUF2633  2 RrRfntrlTrivLliSFLflFG 23
                R Rf t lT i+Ll +FL+l G
  CCE31456.1 46 RSRFRTILTAIMLLAAFLLLLG 67
                99******************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.4
     DUF2633  26 lYsaigaw 33 
                 +Ysa+g w
  CCE31456.1 410 VYSALGLW 417
                 8****988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3718.75
//
Query:       CCE31457.1  [L=455]
Description: related to 3-phytase A precursor [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-61  209.3   0.0    1.3e-61  209.1   0.0    1.0  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.1   0.0   7.2e-66   1.3e-61       2     383 .]      62     417 ..      61     417 .. 0.95

  Alignments for each domain:
  == domain 1  score: 209.1 bits;  conditional E-value: 7.2e-66
                 EEEEEEEEE--SBB-SHHHHHHHHHHHHHHHH.........HHCHHTGCCGGGGT.........--SSSTTS.B-HHHHHHHHHHHHHHHHHCHTCCHT CS
  His_Phos_2   2 LksvvvviRHGdRtPkqkvkksvtspiflsllkkhkeKlkqlktalekkghfpgtyrkveveklqlilkwggelthaGrkqaeelGrqfrqrYplgLlr 100
                 ++++ v++RHG+R+P++k+   ++ +  +++             ++  ++ + ++y         + l+  + lt+ Grk+++++G qf +rY+ +L r
  CCE31457.1  62 VTFASVLSRHGSRFPTKKKSQAYRNLVERIQR---------DVQTYGPGYGWIKNY--------RYSLGQND-LTPPGRKELFRSGVQFFKRYE-NLGR 141
                 67899***************999999999999.........7999********999........99******.*********************.**** PP

                 TSS--TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTTSHHTCHHHCHHHTGGHCHHHHCHCCCCC CS
  His_Phos_2 101 lhltykdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaakdlldeakkklkelltegaeacpafewpikvakrvdelvkylkedm 199
                  +l    ++iras+++Rvi+SA++fa+G++ ++g    +       + ++++++++++e   + + +++  + +c++fe    +ak   ++ + + ++ 
  CCE31457.1 142 RNL---RPFIRASGSDRVIKSAEHFARGFYRAKG----FF--ARIKSFGHTNKMVVIPE---QKGVMNPLTHGNCKSFEA-GLHAKNASDAKNAWLKIW 227
                 *98...9***************************....33..34445677788******...677777777889******.****************** PP

                 HHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHH...HHCT-TTGGGCTH..HCHHHHHHHHHHHHHHHC........TTTCCCCHHHHHHHHHHHHH CS
  His_Phos_2 200 deniakrleqlcpgesnllakerwdklercfyekn...kfdiskicdlydemkydalhnrylkdleelyklakvipqEygigpeeklkiGllllnpllk 295
                  +++++rl+ +++g+ nl+ +e++ ++++c ++++   ++++ ++c+l++   +++  ++y+++l+++  +        g+g++++ ++G++++n+l++
  CCE31457.1 228 GTPVMNRLNRNLKGA-NLTLEETVYMMDLCPFNVAattRNQLPPFCRLFSR--QEWVSYDYYQSLNKWHTY--------GPGNPMASTQGVGYVNELIA 315
                 **************8.***********************************..*****************9........******************** PP

                 HHCTSSSEECCS.........CCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS......TTT..HCCCS-CT-EEEEEEEEETCTTTEEEEE CS
  His_Phos_2 296 kilndlqrtree.........atperhvrlrlyfthdshiysllnaLglpeelagedslaa.....ldrlsaspelpymsqivfelyedssekkfyvrl 380
                 ++++ +++++++         at++  ++l+++f+hd+++ ++++aLgl+++ + +  +++       ++sas+ +p+++++++e++ +++ ++  vr+
  CCE31457.1 316 RLTKTAVQDNTTtnveldsnpATFPLGRSLYADFSHDNTLLAVFGALGLYTNETVLPTDHIvpairAGGYSASWTVPFAARMYVEKMDCRDGQQDLVRV 414
                 **********99***************************************99999999989***************************99999***** PP

                 EEC CS
  His_Phos_2 381 lls 383
                 l++
  CCE31457.1 415 LVN 417
                 997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3650.79
//
Query:       CCE31458.1  [L=230]
Description: uncharacterized protein CPUR_05311 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.081   12.8   4.2       0.15   12.0   4.2    1.4  1  PsbY             Photosystem II protein Y (PsbY)
       0.32   11.4   3.2       0.61   10.5   3.2    1.3  1  FeoB_associated  FeoB-associated Cys-rich membrane protein


Domain annotation for each model (and alignments):
>> PsbY  Photosystem II protein Y (PsbY)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.2   1.6e-05      0.15       6      21 ..      11      26 ..      10      31 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
                HHHHHHHHHHHHHHHH CS
        PsbY  6 LiVLaPillAagWAlf 21
                 iV++ i++A+gWA+f
  CCE31458.1 11 AIVVLLIAAALGWAVF 26
                79*************9 PP

>> FeoB_associated  FeoB-associated Cys-rich membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.2   6.8e-05      0.61       4      25 ..      12      33 ..       8      35 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.8e-05
  FeoB_associated  4 IVgliiaaavafvirrlikkkk 25
                     IV l+iaaa++++++ +i++++
       CCE31458.1 12 IVVLLIAAALGWAVFTHIRARR 33
                     9*****************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1690.01
//
Query:       CCE31459.1  [L=297]
Description: related to quinic acid utilisation protein QUTG (inositol-1(or 4)-monophosphatase) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-64  215.8   0.0      9e-64  215.6   0.0    1.0  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.6   0.0     5e-68     9e-64       3     269 ..       7     286 ..       5     289 .. 0.86

  Alignments for each domain:
  == domain 1  score: 215.6 bits;  conditional E-value: 5e-68
                 HHHHHHHHHHHHHHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHHH CS
  Inositol_P   3 eevtkaavelaakagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFvr 101
                 e v +  v++a +ag ++  + +   ++ ++++k +++d+vt+ad+ave+++ ++l+++fps +++geet+++g   +l+++ +t++vDPiDGT+nFv+
  CCE31459.1   7 EAVRDEMVAVAYEAGRMILAANP---ADLDTGTKLNSVDIVTEADQAVEKMVSTRLSASFPSVAFMGEETYKPGM--RLGPE-PTFVVDPIDGTTNFVH 99 
                 55666667777788888877765...666666777****************************************..*****.**************** PP

                 T-SG-EEEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETC......EEEEECTTS...EGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCH... CS
  Inositol_P 102 gipqvaVsigllvegkpvlGviaqPllgqlysaakgkGaflng......eklplsrap...piseallvtlfavssrkdtseasllekvesavsae... 188
                 g+p+ ++s+gl+ e +p +Gvi++P ++ l++a +g+Ga++         +lpl ++p   +  + +lv+ +++s r+ ++ ++  +   ++ + +   
  CCE31459.1 100 GFPNACISLGLAIERRPAVGVIYNPWQDLLFTAIQGRGAYMTRikgttpLRLPLAKSPrplEGLGTCLVAIEWGSGRDGPNYEIKTDVFKKLAASRetg 198
                 *****************************************99999999888888888989888999***9****999999855544444444443669 PP

                 .....EEEBESSHHHHHHHHHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEEEESSSCSSST.TSSEEEEES..CHHHHHHHHHHHCC CS
  Inositol_P 189 .....gvrsvgssalklaavaeGkadaylefgrekkWDhAAGeaileeaGGvvtdakgegrll.largiiaan..qkelaellaaavee 269
                      ++rs+gs+al++aava+G++day+e g ++ WD++AG++il+eaGG+++  + +++++ l+++i  a   +++ ++ l++++++
  CCE31459.1 199 gsmvhSLRSLGSAALNMAAVAAGQMDAYWEGG-CWAWDVCAGWCILKEAGGIMVSGNPGEWDPeLESRIYLAVrgAPKGQKELVEEFWK 286
                 ****999*************************.************************99777755555554444666667777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.78
# Mc/sec: 1150.89
//
Query:       CCE31460.1  [L=428]
Description: related to multidrug resistant protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-39  135.6  22.6    1.9e-39  135.6  22.6    1.6  2  MFS_1     Major Facilitator Superfamily
    1.9e-06   27.0  16.0    6.6e-06   25.2  16.1    1.9  1  Sugar_tr  Sugar (and other) transporter
    0.00075   18.0   0.7     0.0011   17.5   0.7    1.2  1  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6  22.6   3.2e-43   1.9e-39      17     353 .]       4     377 ..       1     377 [. 0.84
   2 ?   -1.3   1.3      0.13     8e+02     138     172 ..     377     411 ..     374     417 .. 0.60

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 3.2e-43
       MFS_1  17 palplalaedlgispseigl.lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadw 113
                 p l  a+++dl i+ +++   +l+++ +++a++ l +G+ls+ +Gr  vl l+  lf+++ l + + ++    ++++r+l+G+g++a +++g+ +++d+
  CCE31460.1   4 PGLE-AIGHDLSIQSQVQRVlVLSVFIAAYALGPLGWGPLSELYGRVIVLQLSNMLFLVFNLGCGL-AQTRdQMIAFRFLAGIGGSAPLAIGGGVLSDL 100
                 5555.88999998888888856667777999999999***********************666666.777889************************** PP

       MFS_1 114 fpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee....................kgtg 192
                 f  eergra++++s++  lG+++gp+ gg++a+   Wr+vfy  +i++ l+ +l+ll l e++ +    ++k ++                     +  
  CCE31460.1 101 FRAEERGRALSVYSLMPLLGPAVGPVTGGWIAEKTTWRWVFYSTTIACGLVQMLGLLCLQETYAPVLLHRKKMRLmretgnmrlhteydcpdrtlLQML 199
                 ***************************************************999999999999999999888888999999999**9999999995555 PP

       MFS_1 193 paplvpawkallkdpvl..willialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdr............... 270
                  +++v ++++l ++p +  ++l +++l++   ++++l+++p+++ + +g +    gl +++  +++++++g     +++ l dr               
  CCE31460.1 200 ARAFVRPFRLLTTQPIIqvLSLYLMFLYG--TMYLILATFPTLFATKYGETpgviGLNYIS--IGVGFFLG---TQVCAPLQDRvyaalkrryvpdgga 291
                 5555556999*****55222333333333..555599999999999999998544433333..44444444...7799999999888876666666554 PP

       MFS_1 271 lgr.rrrlllallllllaalglallavtssavllll....vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                   r ++r  ++++++ll+ +g+++ a+t + + ++l    + +l+ +g  + f +++ +++d +p ++a++a+g++++++sl+g+ +p
  CCE31460.1 292 G-RpEFRVPMMVPGALLVPVGIIIYAWTAEVPTHWLgpnaGAALFALGTIIGFQCIQGYVVDAYP-RYAASAVGAITVLRSLAGFAFP 377
                 3.26************************9999999999998888888888889***********8.******************9987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.13
       MFS_1 138 pllggllasslgWravfyilaivsllafvlfllll 172
                 pl++++l++ lg+     +la+vs+++++ + +ll
  CCE31460.1 377 PLFAPALYDTLGYGRGGTVLAAVSIVVGWPAPFLL 411
                 66777777777766666666666666655444444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2  16.1   1.1e-09   6.6e-06      44     195 ..      17     163 ..       7     405 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.1e-09
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s+v+  l++s+f++  ++G l  g+l++ +GR  +l  +++lf++ ++ +++a+   +  ++i+ R+l+Gig  +  ++    +s +  ++ Rg+  s+
  CCE31460.1  17 SQVQRVLVLSVFIAAYALGPLGWGPLSELYGRVIVLQLSNMLFLVFNLGCGLAQ---TRDQMIAFRFLAGIGGSAPLAIGGGVLSDLFRAEERGRALSV 112
                 678999************************************************...89**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHH.HHHHHHHHGGGS---H CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlv.pallllilllflPESP 195
                 y l+  +G  v+ ++g  +++ +    wr+ ++++ +   l+++++ll l E+ 
  CCE31460.1 113 YSLMPLLGPAVGPVTGGWIAEKTT---WRWVFYSTTIaCGLVQMLGLLCLQETY 163
                 ****************99988877...***999875516778888899999993 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.7   1.9e-07    0.0011      82     232 ..      23     175 ..       3     184 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.9e-07
       TRI12  82 lfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagasplfvg.....elmsnktkflgllivsipv 175
                 l+ +++    a+  l  g l++ +gr  ++ l+ +l lv   +gc  ++    + a+ +l   ag  g++pl +g     +l+    +   l + s+  
  CCE31460.1  23 LVLSVFIAAYALGPLGWGPLSELYGRVIVLQLSNMLFLVFN-LGCGLAQTRDQMIAFRFL---AGIGGSAPLAIGggvlsDLFRAEERGRALSVYSLMP 117
                 4556677778888888999999***9999999999999987.588777666665555554...788899999887322224555566777788889877 PP

       TRI12 176 vvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwy.yppsfaqlhgkkvrk 232
                 +   +++p  g  +a + +wrw+fy   i   +  +l ++      +   lh kk+r 
  CCE31460.1 118 LLGPAVGPVTGGWIAEKTTWRWVFYSTTIACGLVQMLGLLCLqETYAPVLLHRKKMRL 175
                 77888********************999998877666544430333445678888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3158.13
//
Query:       CCE31461.1  [L=130]
Description: uncharacterized protein CPUR_05314 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0042   16.1   0.1     0.0047   15.9   0.1    1.0  1  TDA11     Topoisomerase I damage affected protein 11


Domain annotation for each model (and alignments):
>> TDA11  Topoisomerase I damage affected protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.6e-07    0.0047     354     426 ..      11      79 ..       5     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.6e-07
       TDA11 354 gePevsefapiteePtqyydqnssssvressaqqydneaseardksyssrslWsfvsevkaGllGkpdeelkd 426
                 ++P+ +  +  t +P+ ++d+ sss  +       +++   a  k  s+rs  s+vsev+ G+l + d e  +
  CCE31461.1  11 PDPDGHVQSSCTCKPATFFDNSSSSVPK----TDLQRDPVMALSKVASARSERSLVSEVRDGVLNQRDLERGG 79 
                 5666666667799***999866655555....445566788999*********************98877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1027.93
//
Query:       CCE31462.1  [L=394]
Description: related to RNA-binding protein La1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-17   62.9   0.0    3.3e-17   62.3   0.0    1.3  1  La        La domain
    2.5e-07   30.4   0.1    4.3e-07   29.7   0.1    1.5  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> La  La domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   3.7e-21   3.3e-17       1      58 [.      84     140 ..      84     141 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 3.7e-21
                 HHHHHHHHHHTT-TTT-HHHHHHHTTSTTS---HHHHHTSSHHHHHHSSHHHHHHHHH CS
          La   1 ilkQvEfYFSdeNLpkDkFLrkkmdkdpegwVplsliasfkrmkkltkdveliaealr 58 
                 i+kQvEfYF+d N ++DkF+++ +  ++++ + +s+++sfkrm++++ +++++++alr
  CCE31462.1  84 IRKQVEFYFGDWNFAQDKFMWESCGGSENKPIAISTLHSFKRMRTFQ-PYSAVVAALR 140
                 89*********************************************.*********9 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1   4.8e-11   4.3e-07      11      61 ..     189     239 ..     177     248 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 4.8e-11
                 SHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTT CS
       RRM_1  11 teeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealng 61 
                 t+ +L+ +F ++G++k +kl r++    kg  fV+F ++e A+k +++  +
  CCE31462.1 189 TQFDLESFFAQYGEVKGLKLRRTNESLFKGSVFVTFIDEETAKKFIATEPK 239
                 6779****************************************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1132  (0.0631379); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 2976.89
//
Query:       CCE31463.1  [L=826]
Description: related to phospholipase A2, cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-27   95.2   0.0    4.2e-27   94.7   0.0    1.2  1  PLA2_B    Lysophospholipase catalytic domain


Domain annotation for each model (and alignments):
>> PLA2_B  Lysophospholipase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   2.4e-31   4.2e-27       1     351 [.     244     607 ..     244     613 .. 0.74

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 2.4e-31
      PLA2_B   1 iaiavSGGGyramltgaGvlkAldsRtdnatglgGlLqsatYlaGlsGgsWlvgslavN.nftsvqelskk.keddsvweleksilnpeglelvknikr 97 
                 ia+ +SGGG+ra++ g+G + A +        + Gl+++ tY aG+sG+ Wl   l +     +  +l+++ k  ++v     ++     ++l+++   
  CCE31463.1 244 IAMCGSGGGLRALVAGTGSMIAAE--------EDGLFDCVTYTAGVSGSCWLQTLLNSSiAGGNLARLVEHlKARINVHIAYAPLAFQSLVSLPTSKYL 334
                 7999******************99........89*****************976553221123455666666678999999999999999********* PP

      PLA2_B  98 ydeivdevekKkdagfnvsltDiwGralseklveaeeggvnltlsslk...daekfqeaemplPiivadgrk.............pgetvinlNa...t 177
                  + +v+++    +a+f   l Di+G +l+ +l+   +g+ ++   +lk   +   ++ +e plPi +a   +              +++vi+  a   +
  CCE31463.1 335 LSGLVEKLRGDPKAEF--GLVDIYGLLLGARLLV-PKGELGVNEADLKisnQRGALKFGERPLPIYTAVRHEipeiegtqrepteAEKKVIKD-ApwfQ 429
                 **************99..599*******999876.33333333333321114478999*********99887788888888766444455543.32337 PP

      PLA2_B 178 vfEfsPyelgswdaklnsFvpveylGtklsnGtvvkkgkcvagfd.naGflmgtsstlFnevlleinsts...mlesllkellkkllkdlsedsedisq 272
                 ++E++Pye+    ++ ++ +p+  +G +++nG+ v  ++  +     + +lmg + + F   l +  ++     l       ++ +++  ++d   +  
  CCE31463.1 430 WYEITPYEFF--CEEFGAGIPTWAMGRRFNNGKDVPPENGFHLPElRVPLLMGIFGSAFCATLSHYYKEIkplLLRGAGLASIDGFVSGRDDDLIKVHP 526
                 89******96..99******************9775554444333145666666666666666665555422225555556667777665555544444 PP

      PLA2_B 273 yapnpfkdaeeenqnatq.......sivesktLdlvdggedgqniplvpllqkerevdvifaldnsadteeswpdgvslvatyeRv 351
                 ++  p +  ++++q + +       si e+++++l+d g   +n+p+ pll++ r vd+++a+d+sad ++   +  s+ + y R+
  CCE31463.1 527 ID--PATIPNFAYQMHGKlpsttprSIYEQEHIQLMDAGMS-NNLPIYPLLRPGRGVDILVAFDASADIQT--DNWLSVADGYARQ 607
                 44..444444444444444455566**************86.69************************988..5567778888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 5738.47
//
Query:       CCE31464.1  [L=392]
Description: related to ribosomal protein YmL3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-07   30.9   0.0     0.0076   16.4   0.0    2.2  2  Ribonucleas_3_3  Ribonuclease-III-like
     0.0068   17.1   0.0      0.017   15.9   0.0    1.7  1  dsrm             Double-stranded RNA binding motif
  ------ inclusion threshold ------
      0.014   16.0   0.0      0.051   14.2   0.0    2.0  1  Ribonuclease_3   Ribonuclease III domain


Domain annotation for each model (and alignments):
>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.3e-06    0.0076      19      75 ..     111     168 ..      95     180 .. 0.83
   2 !   12.3   0.0   2.4e-05      0.14      97     126 ..     248     277 ..     215     279 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.3e-06
  Ribonucleas_3_3  19 kghNerLefLGdavLklsvseyllek.aekdegeltklraslvseeslaeiAkelgLg 75 
                      + +N  L+fLG+ +++  v+eyl+ k ++ ++++  + +++   +esl  iA+++g +
       CCE31464.1 111 SFNNSNLAFLGSTIINYHVMEYLMCKwPRLPTAIVYEALRAYAGQESLHMIARRWGVE 168
                      4589******************9766267799999999999*************9977 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.4e-05
  Ribonucleas_3_3  97 adaleAliGAiyldkgaevaqefveekilk 126
                      ++  +A++G +y   g ++a++fv ++il+
       CCE31464.1 248 SSFTQAVVGSVYAHCGRQTAKSFVTSHILS 277
                      57789***********************97 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.8e-06     0.017       4      65 ..     294     356 ..     291     357 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.8e-06
                 HHHHHHHHTTSEEEEEEEEEESSTSSSE.EEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHH CS
        dsrm   4 kLqeycqkkgkppnyeyvseegpphslp.kFvvtvkvngklygsGvgsnKKeAeqsAAedale 65 
                 +L  +c ++g++ +    ++e+++ s++ +Fvv v+ +  + g+G+g + +    +A ++al+
  CCE31464.1 294 ELAMLCAREGFEAPIARLESETGRLSRTpVFVVGVYSGRDKLGEGTGPSLDVGRRKACMNALK 356
                 66778999997777777777777777777********************************97 PP

>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   8.5e-06     0.051       2     105 .]     116     263 ..     115     263 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.5e-06
                     HHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHHHCTTCHCCHCHH.................................... CS
  Ribonuclease_3   2 rLeflGDavlklaittylfetypdahegrlsklrsklvsnenlarlakklglpkflrase.fdp.prnwlppgy..................... 73 
                      L+flG  ++++++ +yl+++ p +    + ++  ++  +e+l  +a+++g +      e  dp   +w+p g+                     
      CCE31464.1 116 NLAFLGSTIINYHVMEYLMCKWPRLPTAIVYEALRAYAGQESLHMIARRWGVEAAAAPGEeVDPgLLQWKPDGEdmtvnkrwgyvrtevqrnaiy 210
                     59*********************999999999999999999999999888877665521101111223333333444444444444433333333 PP

                     .............HHCCSTTCHC..................TSHHHHHHHHHHHHHHHHHCT CS
  Ribonuclease_3  74 ............klsddekeddd..................adkvladvvEAliGaiyldsg 105
                                 +                            +   +++  +A++G +y ++g
      CCE31464.1 211 rrglssrvvlddA---------FgdqiaksdqnaansfaafQINAYSSFTQAVVGSVYAHCG 263
                     3434444444441.........0333333333444445555666677777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2872.21
//
Query:       CCE31465.1  [L=52]
Description: uncharacterized protein CPUR_05318 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 409.93
//
Query:       CCE31466.1  [L=550]
Description: uncharacterized protein CPUR_05319 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-14   53.0  15.8    1.2e-12   48.0   6.8    2.3  2  zf-RING_2       Ring finger domain
    8.1e-12   44.8  10.0    4.1e-08   33.0   3.9    2.2  2  zf-C3HC4_3      Zinc finger, C3HC4 type (RING finger)
    4.4e-10   39.1   4.4    4.4e-10   39.1   4.4    2.3  3  zf-RING_11      RING-like zinc finger
    6.5e-10   38.7  15.7    3.2e-09   36.5   7.1    2.3  2  zf-C3HC4_2      Zinc finger, C3HC4 type (RING finger)
    2.9e-08   33.5  14.2    1.2e-06   28.3   5.9    2.3  2  zf-C3HC4        Zinc finger, C3HC4 type (RING finger)
      6e-07   29.7   5.9      6e-07   29.7   5.9    2.4  2  zf-rbx1         RING-H2 zinc finger domain
    6.1e-06   26.0  11.9    9.3e-05   22.2   4.7    2.3  2  Prok-RING_4     Prokaryotic RING finger family 4
    1.7e-05   24.6  10.5    2.7e-05   24.0   3.6    2.3  2  zf-RING_5       zinc-RING finger domain
    0.00063   19.7   4.9    0.00063   19.7   4.9    2.5  2  zf-RING_UBOX    RING-type zinc-finger
     0.0041   17.1   3.9      0.081   13.0   0.7    2.7  2  DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domai
     0.0043   17.1   1.9     0.0043   17.1   1.9    1.9  2  zf-ANAPC11      Anaphase-promoting complex subunit 11 RING-H2
     0.0062   16.1   5.0     0.0062   16.1   5.0    2.3  2  Zn_ribbon_17    Zinc-ribbon, C4HC2 type
  ------ inclusion threshold ------
      0.037   14.1   0.2      0.037   14.1   0.2    2.1  2  HypA            Hydrogenase/urease nickel incorporation, meta
      0.083   12.7   1.0        3.8    7.4   0.2    2.3  2  Rad50_zn_hook   Rad50 zinc hook motif
       0.13   12.3   6.3        1.7    8.7   0.3    2.4  2  DZR             Double zinc ribbon
       0.15   12.4   5.4      0.099   12.9   2.0    2.3  2  zinc_ribbon_9   zinc-ribbon
       0.19   11.7   7.6       0.67   10.0   0.3    2.4  2  zinc-ribbons_6  zinc-ribbons
       0.65   10.2  12.1       0.65   10.2   0.7    2.7  2  zf-C3HC4_4      zinc finger of C3HC4-type, RING
        1.2    9.3  16.5       0.24   11.5   8.0    2.4  2  RINGv           RING-variant domain
        1.6    8.6  11.9       0.87    9.4   3.9    2.3  2  zf-RING_4       RING/Ubox like zinc-binding domain
        3.9    7.4  14.5        1.2    9.1   5.0    2.8  3  PHD             PHD-finger
        5.6    6.9   7.1        2.1    8.3   1.1    2.4  2  zf-RING_6       zf-RING of BARD1-type protein
        7.8    6.5  10.6         43    4.1   0.5    3.4  3  Prok-RING_1     Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   1.6   0.00089      0.69      24      43 ..      20      41 ..      17      42 .. 0.85
   2 !   48.0   6.8   1.5e-15   1.2e-12       2      44 .]     309     351 ..     308     351 .. 0.98

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00089
   zf-RING_2 24 vfhreClerwlrssst..CPlC 43
                v+++ C ++wlr  +   CP C
  CCE31466.1 20 VYCHACSNEWLRDAHGltCPSC 41
                49********98877789**** PP

  == domain 2  score: 48.0 bits;  conditional E-value: 1.5e-15
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCPlCr 44 
                 eC+IC +e+  ++ ++ lpC+H fh++C+  wl++++tCP+Cr
  CCE31466.1 309 ECSICIDEMAMGQIAVFLPCKHWFHEDCVVLWLKEHNTCPVCR 351
                 8*****************************************9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   1.6e-05     0.013      23      49 ..      19      47 ..      17      48 .. 0.91
   2 !   33.0   3.9   5.2e-11   4.1e-08       4      49 ..     309     356 ..     307     357 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.6e-05
                EEE-HHHHHHHHH..TT-B-TTT--B--E CS
  zf-C3HC4_3 23 lvlCeeCaekllk..rkkkCpiCrrpiek 49
                +v+C++C++++l+  +  +Cp C ++i++
  CCE31466.1 19 VVYCHACSNEWLRdaHGLTCPSCESDITE 47
                689*********99999*********987 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 5.2e-11
                 B-TTTSSS...BS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B--E CS
  zf-C3HC4_3   4 eCviCler...prnvvllpCgHlvlCeeCaekllkrkkkCpiCrrpiek 49 
                 eC+iC ++    + +v+lpC+H+ + e+C+  +lk++++Cp+Cr+p+ek
  CCE31466.1 309 ECSICIDEmamGQIAVFLPCKHW-FHEDCVVLWLKEHNTCPVCRTPVEK 356
                 8******85545559********.**********************986 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.4     5e+03       9      21 ..      14      26 ..      11      27 .. 0.79
   2 !   39.1   4.4   5.7e-13   4.4e-10       1      29 []     309     337 ..     309     337 .. 0.97
   3 ?   -1.8   0.1       3.4   2.7e+03       2      13 ..     347     358 ..     347     359 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.4
  zf-RING_11  9 fkpgqalfilpCs 21
                 ++g+ +++  Cs
  CCE31466.1 14 SADGEVVYCHACS 26
                5689999999997 PP

  == domain 2  score: 39.1 bits;  conditional E-value: 5.7e-13
  zf-RING_11   1 eCsICLeefkpgqalfilpCsHtFHfkCI 29 
                 eCsIC++e++ gq  ++lpC+H+FH +C+
  CCE31466.1 309 ECSICIDEMAMGQIAVFLPCKHWFHEDCV 337
                 9************99999**********7 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.4
  zf-RING_11   2 CsICLeefkpgq 13 
                 C +C  ++++++
  CCE31466.1 347 CPVCRTPVEKND 358
                 99**99999887 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   1.4    0.0054       4.2      21      40 .]      20      41 ..      19      41 .. 0.91
   2 !   36.5   7.1   4.1e-12   3.2e-09       1      40 []     309     350 ..     309     350 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0054
  zf-C3HC4_2 21 vfCqkCilrsLeekn..eCPlC 40
                v+C  C  ++L++     CP C
  CCE31466.1 20 VYCHACSNEWLRDAHglTCPSC 41
                68*********987779***** PP

  == domain 2  score: 36.5 bits;  conditional E-value: 4.1e-12
  zf-C3HC4_2   1 kCpiCldmlkdpsvvt..pCgHvfCqkCilrsLeekneCPlC 40 
                 +C iC+d++ ++      pC+H f+++C+  +L+e+n CP+C
  CCE31466.1 309 ECSICIDEMAMGQIAVflPCKHWFHEDCVVLWLKEHNTCPVC 350
                 6**********9544468************************ PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   1.2    0.0007      0.55      21      41 .]      21      41 ..      20      41 .. 0.95
   2 !   28.3   5.9   1.5e-09   1.2e-06       1      41 []     310     350 ..     310     350 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0007
                B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4 21 fCskCirkilksrkkvkCPlC 41
                +C++C  ++l++    +CP C
  CCE31466.1 21 YCHACSNEWLRDAHGLTCPSC 41
                8**********999999**** PP

  == domain 2  score: 28.3 bits;  conditional E-value: 1.5e-09
                 -TTT-S--SS-E...E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iC +e++  +   +l+CkH f+++C++ +lk  ++++CP+C
  CCE31466.1 310 CSICIDEMAMGQiaVFLPCKHWFHEDCVVLWLK--EHNTCPVC 350
                 ********99888899*****************..9999**** PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   1.6      0.17   1.3e+02      36      54 ..      21      41 ..      18      42 .. 0.83
   2 !   29.7   5.9   7.7e-10     6e-07      14      55 .]     310     351 ..     304     351 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.17
     zf-rbx1 36 FHlhCiskWlkt..rkvCPlc 54
                + + C ++Wl+     +CP c
  CCE31466.1 21 YCHACSNEWLRDahGLTCPSC 41
                6678*******976678***9 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 7.7e-10
     zf-rbx1  14 cieckapgdeecpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                 c  c  +       v+  C+H FH +C+  Wlk++++CP+cr
  CCE31466.1 310 CSICIDEMAMGQIAVFLPCKHWFHEDCVVLWLKEHNTCPVCR 351
                 555555555544455569***********************8 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.7    0.0035       2.7      20      41 ..      21      46 ..      18      50 .. 0.82
   2 !   22.2   4.7   1.2e-07   9.3e-05       1      44 [.     310     358 ..     310     360 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0035
  Prok-RING_4 20 vCkeCfdsk..dls..sCPlCqrris 41
                  C++C +++  d    +CP C++ i 
   CCE31466.1 21 YCHACSNEWlrDAHglTCPSCESDIT 46
                 5********6644489******9875 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 1.2e-07
  Prok-RING_4   1 CvlCgeq...ekkailepCgHlvCkeCfdsk..dlssCPlCqrrisksd 44 
                  C +C  +   ++ a++ pC+H + ++C   +  ++++CP+C++ ++k+d
   CCE31466.1 310 CSICIDEmamGQIAVFLPCKHWFHEDCVVLWlkEHNTCPVCRTPVEKND 358
                  8888887777888999*************9988999******9998765 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.6     0.035        27      23      43 ..      20      42 ..      20      43 .. 0.91
   2 !   24.0   3.6   3.5e-08   2.7e-05       1      44 []     309     352 ..     309     352 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.035
   zf-RING_5 23 ifCekClkkll..ekeavCpiCr 43
                ++C++C ++ l  +   +Cp C+
  CCE31466.1 20 VYCHACSNEWLrdAHGLTCPSCE 42
                68*******999999*******7 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 3.5e-08
   zf-RING_5   1 hCnkCfeklskeekfyltsCgHifCekClkkllekeavCpiCrk 44 
                 +C++C +++   + +++++C+H f+e+C+   l++ ++Cp+Cr+
  CCE31466.1 309 ECSICIDEMAMGQIAVFLPCKHWFHEDCVVLWLKEHNTCPVCRT 352
                 6********99999*****************999********95 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.46   3.6e+02      19      39 .]      20      39 ..      20      39 .. 0.88
   2 !   19.7   4.9   8.1e-07   0.00063       1      39 []     310     348 ..     310     351 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.46
  zf-RING_UBOX 19 tFCreClwelskslegafkCP 39
                  ++C+ C  +++ +    ++CP
    CCE31466.1 20 VYCHACS-NEWLRDAHGLTCP 39
                  79*****.7889999999998 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 8.1e-07
  zf-RING_UBOX   1 CpIClelft...dPlv.lpCGHtFCreClwelskslegafkCP 39 
                   C+IC +++       v lpC H F+++C+     +l+ + +CP
    CCE31466.1 310 CSICIDEMAmgqI-AVfLPCKHWFHEDCV---VLWLKEHNTCP 348
                   ********86642.3448***********...88999999999 PP

>> DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.053        41       1       9 [.      37      45 ..      37      50 .. 0.86
   2 !   13.0   0.7    0.0001     0.081       1      15 [.     346     360 ..     346     367 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.053
  DNA_ligase_ZBD  1 hCPvCGsav 9 
                    +CP+C s +
      CCE31466.1 37 TCPSCESDI 45
                    7****9976 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.0001
  DNA_ligase_ZBD   1 hCPvCGsavvReege 15 
                     +CPvC ++v+++++e
      CCE31466.1 346 TCPVCRTPVEKNDEE 360
                     7*********98876 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2       3.1   2.4e+03      31      39 ..      34      42 ..      18      47 .. 0.55
   2 !   17.1   1.9   5.5e-06    0.0043      48      80 ..     324     353 ..     304     358 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.1
                TTS--TTCS CS
  zf-ANAPC11 31 fdGtcpsck 39
                +  tcpsc+
  CCE31466.1 34 HGLTCPSCE 42
                333555554 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 5.5e-06
                 EEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB CS
  zf-ANAPC11  48 vlGkckhnfhlhcilkwletetskglcpmcrqt 80 
                 v+  ckh fh+ c++ wl+++   + cp+cr  
  CCE31466.1 324 VFLPCKHWFHEDCVVLWLKEH---NTCPVCRTP 353
                 4556**************976...67****975 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   1.6      0.39   3.1e+02      30      47 ..      23      40 ..      14      44 .. 0.79
   2 !   16.1   5.0     8e-06    0.0062       4      47 ..     307     349 ..     304     355 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.39
  Zn_ribbon_17 30 asCarewfenddlaeCps 47
                   +C +ew+   +   Cps
    CCE31466.1 23 HACSNEWLRDAHGLTCPS 40
                  679999999888778887 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 8e-06
  Zn_ribbon_17   4 lksCayC.elavkgrvvlcgvCeHvlHasCarewfenddlaeCps 47 
                   + +C++C +  + g++ +   C+H  H++C+  w+++ +   Cp+
    CCE31466.1 307 TAECSICiDEMAMGQIAVFLPCKHWFHEDCVVLWLKEHN--TCPV 349
                   678****445678999*******************9999..8886 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   4.7e-05     0.037      66     101 ..      15      50 ..       3      53 .. 0.82
   2 ?   -0.1   0.8       1.2     9e+02      68      94 ..     305     352 ..     287     360 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.7e-05
                 EE--EEEETTTS-EEECHHHHHS-TTTSSS-EEEEE CS
        HypA  66 evpvkvrCreCgkefeleekalrCpkCgsadveivs 101
                     +v+C+ C++e+  +++ l+Cp+C+s  +ei+s
  CCE31466.1  15 ADGEVVYCHACSNEWLRDAHGLTCPSCESDITEIIS 50 
                 5556799********98877899******9988876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
                 --EEEETTTS-EEECHHHHH.....................S-TTTSS CS
        HypA  68 pvkvrCreCgkefeleekal.....................rCpkCgs 94 
                 + +++C+ C  e+ + + a+                     +Cp C +
  CCE31466.1 305 EGTAECSICIDEMAMGQIAVflpckhwfhedcvvlwlkehnTCPVCRT 352
                 566777777777776642223566666667777777777778888875 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.069        54      15      31 ..      30      47 ..      28      47 .. 0.86
   2 ?    7.4   0.2    0.0049       3.8      15      28 ..     341     353 ..     339     360 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.069
                   HTT-SE.E-TTT--EE-H CS
  Rad50_zn_hook 15 lkeakg.cCPlCgRelde 31
                   l +a+g  CP C+++++e
     CCE31466.1 30 LRDAHGlTCPSCESDITE 47
                   5678999*******9886 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0049
                    HTT-SEE-TTT--E CS
  Rad50_zn_hook  15 lkeakgcCPlCgRe 28 
                    lke++  CP+C  +
     CCE31466.1 341 LKEHN-TCPVCRTP 353
                    67777.*****987 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.3    0.0022       1.7      13      38 ..      20      45 ..      12      48 .. 0.82
   2 ?    5.9   1.1     0.017        13      15      41 ..     310     357 ..     300     362 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0022
         DZR 13 rfCseCgtklkavaaedrCpsCgekv 38
                 +C++C ++  + a+  +CpsC++++
  CCE31466.1 20 VYCHACSNEWLRDAHGLTCPSCESDI 45
                59****99966789999*****9875 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.017
         DZR  15 CseCgtklkavaa......................edrCpsCgekvdpe 41 
                 Cs C  ++  + +                      +++Cp C ++v+++
  CCE31466.1 310 CSICIDEMA-MGQiavflpckhwfhedcvvlwlkeHNTCPVCRTPVEKN 357
                 555555553.444555556666666666666666677777777777665 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   2.0   0.00013     0.099       3      35 .]      20      49 ..      18      49 .. 0.79
   2 ?   -0.4   0.1       1.9   1.5e+03      21      28 ..     345     351 ..     338     353 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00013
  zinc_ribbon_9  3 yWChqCdrfVsvspdedsdvlCPhCgggFVEei 35
                    +Ch C++++    d +  + CP+C+++  E+i
     CCE31466.1 20 VYCHACSNEWLR--DAHGLT-CPSCESDITEII 49
                   59*****88873..444555.******999986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.9
  zinc_ribbon_9  21 dvlCPhCg 28 
                    + +CP C+
     CCE31466.1 345 N-TCPVCR 351
                    3.5****7 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00086      0.67       2      28 ..      21      47 ..      14      52 .. 0.78
   2 ?    4.2   2.3     0.053        41       2      41 ..     309     356 ..     300     359 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00086
                    --SSS-S--EE-SSEEE-TTT--EEEE CS
  zinc-ribbons_6  2 kCpeCqqelekrgeqyhCeaCqedlkk 28
                    +C++C +e  ++ + ++C +C++d+++
      CCE31466.1 21 YCHACSNEWLRDAHGLTCPSCESDITE 47
                    688888888888888888888887765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.053
                     --SSS-S--EE-S.......SEEE-TTT--.EEEEEEE-SSS-S---E CS
  zinc-ribbons_6   2 kCpeCqqelekrg.......eqyhCeaCqe.dlkkealCpeCeqelev 41 
                     +C  C  e+   +       ++ + e C    lk++++Cp C+ ++e+
      CCE31466.1 309 ECSICIDEMAMGQiavflpcKHWFHEDCVVlWLKEHNTCPVCRTPVEK 356
                     68889999987666777777777777777767899999****999986 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.7   0.00083      0.65      17      42 .]      18      41 ..      13      41 .. 0.91
   2 ?    3.7   5.0     0.091        71      11      42 .]     323     350 ..     310     350 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00083
  zf-C3HC4_4 17 GhsfClsCisslqkepdgeqllCplC 42
                + ++C  C +++  +++g  l+Cp C
  CCE31466.1 18 EVVYCHACSNEWLRDAHG--LTCPSC 41
                578*************99..8***** PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.091
  zf-C3HC4_4  11 PvsleCGhsfClsCisslqkepdgeqllCplC 42 
                  v l+C h f   C+  + ke      +Cp+C
  CCE31466.1 323 AVFLPCKHWFHEDCVVLWLKEH----NTCPVC 350
                 5889***********9888887....359*99 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   1.3      0.22   1.7e+02      22      48 .]      17      41 ..      14      41 .. 0.82
   2 ?   11.5   8.0   0.00031      0.24       1      48 []     310     350 ..     310     350 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.22
                TCCCSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv 22 GslklvHesClekWldekeantqCeiC 48
                G++ + H +C ++Wl+   +  +C  C
  CCE31466.1 17 GEVVYCH-ACSNEWLRD-AHGLTCPSC 41
                6677777.7*******9.888889888 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00031
                 ETTTTEE-SSSS.--B-SS--STCCCSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv   1 CriCleeeeese.plispCkCrGslklvHesClekWldekeantqCeiC 48 
                 C iC +e++  + +++ pCk     +++He+C+  Wl+e   +++C +C
  CCE31466.1 310 CSICIDEMAMGQiAVFLPCK-----HWFHEDCVVLWLKE---HNTCPVC 350
                 99*****9999999999998.....9************9...899*999 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.1     0.063        49      25      45 ..      22      43 ..      19      45 .. 0.80
   2 ?    9.4   3.9    0.0011      0.87       1      46 [.     310     353 ..     310     355 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.063
   zf-RING_4 25 ClfCyhrileee.egrCPaCre 45
                C+ C ++ l+++ +  CP C +
  CCE31466.1 22 CHACSNEWLRDAhGLTCPSCES 43
                9999999999761568****75 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0011
   zf-RING_4   1 cplCdeeldetdkdlkpCeCgyqiClfCyhrileeeegrCPaCree 46 
                 c +C++e+ + ++     +C++ +  +C    l +e++ CP Cr++
  CCE31466.1 310 CSICIDEM-AMGQIAVFLPCKHWFHEDCVVLWL-KEHNTCPVCRTP 353
                 88999999.566666666788888899988777.57********87 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.075        58       9      23 ..      13      27 ..       8      30 .. 0.83
   2 ?    1.0   2.4      0.52     4e+02       1      22 [.      21      42 ..      21      44 .. 0.85
   3 ?    9.1   5.0    0.0015       1.2       2      50 ..     310     351 ..     309     359 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.075
                TSTTSCEEEETTTSC CS
         PHD  9 sdeeeelvqCdgCkr 23
                + +++e+v+C+ C++
  CCE31466.1 13 ASADGEVVYCHACSN 27
                56799********86 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.52
                SBTTTTSTTSTTSCEEEETTTS CS
         PHD  1 rCavCkkksdeeeelvqCdgCk 22
                +C++C++++  + + + C +C+
  CCE31466.1 21 YCHACSNEWLRDAHGLTCPSCE 42
                6999999777899999999997 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0015
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50 
                 C++C + + + +++ +   Ck+wfH +C+ + l+  e+     +C+ C+
  CCE31466.1 310 CSICID-EMAMGQIAVFLPCKHWFHEDCVVLWLK--EHN----TCPVCR 351
                 888888.778888888889**********99988..443....488776 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.6      0.45   3.5e+02      29      47 ..      20      42 ..      15      46 .. 0.70
   2 ?    8.3   1.1    0.0026       2.1       9      50 ..     309     354 ..     304     360 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.45
   zf-RING_6 29 ifcsnc....isdcfgsgcpvcy 47
                ++c  c    + d  g  cp c 
  CCE31466.1 20 VYCHACsnewLRDAHGLTCPSCE 42
                555555222468999*****995 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0026
   zf-RING_6   9 rcsrctdilr..epvclggcehifcsncisdcfg..sgcpvcytpa 50 
                  cs c d +   +   +  c+h f  +c+   +     cpvc tp 
  CCE31466.1 309 ECSICIDEMAmgQIAVFLPCKHWFHEDCVVLWLKehNTCPVCRTPV 354
                 5888888654113445668**********988752278*******7 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.6     0.074        57       6      27 ..      21      42 ..      15      47 .. 0.86
   2 ?    4.1   0.5     0.056        43       5      34 ..     308     336 ..     305     340 .. 0.85
   3 ?    3.9   0.2     0.066        51       4      18 ..     344     358 ..     341     359 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.074
  Prok-RING_1  6 kCpvCgkelkeedDiVvCpeCg 27
                  C +C++e   +    +Cp C 
   CCE31466.1 21 YCHACSNEWLRDAHGLTCPSCE 42
                 6999999999999999999996 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.056
  Prok-RING_1   5 kkCpvCgkelkeedDiVvCpeCgtpyHraC 34 
                   +C++C +e++ ++ i v   C+  +H +C
   CCE31466.1 308 AECSICIDEMAMGQ-IAVFLPCKHWFHEDC 336
                  58**********95.666666******999 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.066
  Prok-RING_1   4 gkkCpvCgkelkeed 18 
                   + CpvC+ +++++d
   CCE31466.1 344 HNTCPVCRTPVEKND 358
                  567888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4154.43
//
Query:       CCE31467.1  [L=1076]
Description: probable bifunctional P-450:NADPH-P450 reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-82  278.2   0.0    1.7e-82  277.7   0.0    1.1  1  p450           Cytochrome P450
    1.3e-30  106.6   0.0    2.5e-30  105.7   0.0    1.4  1  FAD_binding_1  FAD binding domain
    1.1e-24   87.3   0.0    3.6e-24   85.6   0.0    2.0  2  Flavodoxin_1   Flavodoxin
    6.2e-11   42.9   0.0    1.7e-10   41.5   0.0    1.8  1  NAD_binding_1  Oxidoreductase NAD-binding domain
     0.0037   17.5   0.0      0.009   16.3   0.0    1.6  1  Flavodoxin_5   Flavodoxin domain


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.7   0.0   4.6e-86   1.7e-82       2     457 ..       8     450 ..       6     455 .. 0.90

  Alignments for each domain:
  == domain 1  score: 277.7 bits;  conditional E-value: 4.6e-86
                 -SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHH CS
        p450   2 pgptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRr 100
                 p p  lplvgnl +++    + + l +l+ +yg+ifrl +gs++vv++s+  +v ev   k   f +++++al   +++ ++g   ++++ + w k +r
  CCE31467.1   8 PQPVGLPLVGNLGEFK--TTPIRDLCRLADTYGEIFRLSFGSRDVVFVSSQRLVNEVCDEK--RFHKTMQSALRMVREGIHDGLFTALDDEPNWGKAHR 102
                 44559**********9..4555559*********************************999..588888999988889999999999************ PP

                 HHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHT CS
        p450 101 fltptltsfgklsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllk 199
                 +ltp++    ++++ + + ++a++l+ k+ ++ ++   ++ ++ +++ ald+++ +++  rf++  +++l  +v+a+ + +s+ ++++ +  ++ p+  
  CCE31467.1 103 VLTPAFGPLSIQAMFDQMHDIASQLCMKFARHGSQT-PINASDEFTRLALDTLALCAMDFRFNSFYHDELHPFVQAMGDFLSEAAQRN-RRPKFAPD-- 197
                 *******99888*******************99999.7******************************9************9996655.66666663.. PP

                 CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH CS
        p450 200 ylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqek 298
                 +l  + ++k+ +   +l  ++d+++  r+++  ++    +d+l+a+l+  +   g +kl+d++++++++++l+aG++Tts  ls+a+y+L+knP++ +k
  CCE31467.1 198 FLYRSANQKYWNDIAILRTTADEVVAHRKKNPTDR----KDLLNAMLNGVDPATG-EKLDDANITNQLITFLIAGHETTSGLLSFAFYHLLKNPDAYKK 291
                 34556666666666999999999999999988877....8*********855555.5****************************************** PP

                 HHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS.. CS
        p450 299 lreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg.. 393
                 l++E+dev+g+ ++++ ++l+klpyl  v++EtLRl + +p   + e+ +d+vi+g yl+ kG  + ++l   h dp+vf p+ +eF+peR ++e+   
  CCE31467.1 292 LQQEVDEVIGR-SPIRVEHLSKLPYLSSVLRETLRLTSGIP-AFSVEAYEDTVIGGkYLVHKGEPITMFLLKSHLDPAVFgPDTHEFKPERMSEENFer 388
                 ***********.69***************************.8889*************************************************9977 PP

                 .CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSCSSEEESS CS
        p450 394 .nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileksglllppk 457
                  n +  +  + PFG+G+R CiG+++A  e  l+++ l+qnFe++l + +     +e+  l+++p+
  CCE31467.1 389 lN-REFPNCWKPFGNGKRGCIGRPFAWQEALLCMSMLIQNFEFTLADPSYTLEFQET--LTIKPS 450
                 43.3667889**********************************9765555555555..666665 PP

>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.0   6.9e-34   2.5e-30      30     222 .]     708     890 ..     685     890 .. 0.94

  Alignments for each domain:
  == domain 1  score: 105.7 bits;  conditional E-value: 6.9e-34
                    EEEEE-TTBT----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSSSEEHHHHHHHTB--SS---HHHHHHHGGG-SS CS
  FAD_binding_1  30 hveldisdsglkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprleptTlrqalkyylditgppskqlleaLaefase 125
                    h+e+ +  sg++Y  Gd+l+v p N++++V+ +l+ ++l    d+++ ++++++   +  p  + ++   +l  y++i  p +k+ +++La    +
     CCE31467.1 708 HIEMQL-PSGMTYRAGDYLAVLPFNHKATVARVLKHFQLSR--DATLTMRSDGP---TTLPTGTAISAVHVLDAYVEISQPATKRNIQNLAAATDD 797
                    555555.37********************************..9********96...789999999999*************************** PP

                    HHHHHHHHHHHH-HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S-TTTTTTEEEEEEE--EE--.-SSS--EE-HHH CS
  FAD_binding_1 126 eeekqkLekLssdegakeykelklneartllevleefpsvklplefLlevlpqLkpRyYSiSssskvhpdevhltvvVveyet.dgegrirkGvcs 220
                    e    +L+kL+ d    +yk+  + ++ ++l++le fp +k+p++  le+lp ++ R YSiSss+ ++  +v lt  V e +   g+g+  +Gv+s
     CCE31467.1 798 EGVTSQLQKLAGD----DYKDHIFAKRVSILDLLERFPAIKIPFGTYLEMLPPMRVRQYSISSSPLANSSRVSLTYSVLEQPAfSGQGP-YYGVAS 888
                    ***********98....9999999999*******************************************************9666665.79**** PP

                    HH CS
  FAD_binding_1 221 ny 222
                    ny
     CCE31467.1 889 NY 890
                    98 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.1   7.4e+03      19      52 ..     144     175 ..     122     187 .. 0.61
   2 !   85.6   0.0     1e-27   3.6e-24       1     143 []     506     641 ..     506     641 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.1
                   HHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEE CS
  Flavodoxin_1  19 eelgehgfnadvvslsdydeslseieeealllvv 52 
                   +e+ + ++++ +++++d+   ++++ +++l  +v
    CCE31467.1 144 DEFTRLALDTLALCAMDFR--FNSFYHDELHPFV 175
                   4555555555566666666..5566666665555 PP

  == domain 2  score: 85.6 bits;  conditional E-value: 1e-27
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   i+YgS+ G++e+lA+++a ++ +hgf+a+ +   +    ++++++++ ++++t+  ++G+pp n+  +f+++++  +    d ++++v++avfg+G 
    CCE31467.1 506 IFYGSNSGTCEALAQRVASDAARHGFRATSLAPLNEA--TKKLPKDRPVIIITA-SYEGQPPSNAI-QFVEWMQSLK---GDSEMKDVSYAVFGCGH 595
                   8*************************76666555555..79*************.889******99.*******994...5667************* PP

                   TTSSS.TTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHHHHHHHH CS
  Flavodoxin_1  98 sayen.FcaagkkldekleelGaerllkllegdednqegqeeafrkW 143
                   + + + F  + k +de l++lG+erll+l++ d +   ++  +f++W
    CCE31467.1 596 HDWVQtFHRIPKLVDETLQKLGGERLLPLTATDAAG-GNMFGDFESW 641
                   ****************************77777765.6777888887 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   4.8e-14   1.7e-10       2     107 ..     924    1033 ..     923    1035 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 4.8e-14
                     EEEGGGGHHHHHHHHHHHHH.CT..TCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH...H CS
  NAD_binding_1    2 iagGtGiaPvrsvlrailee.ak..dktkvvlvyGnrtee.dllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells...l 88  
                     ia+G+G+aP+r+++++++   a   +  ++ l++G+r+ + d ly +el ++++   g+++v ++ sr ++ + +g  +vq++l  + +    l
     CCE31467.1  924 IAAGSGLAPFRGFVQERATMiAAgkKVAPALLFFGCRSPNtDDLYADELSKWEAL--GAVEVRRAYSRAPEAS-QGCKYVQHRLSHDGDAvmdL 1014
                     9**************988874335578999********99999*********443..4467777766766665.6889******9988889888 PP

                     SSTTEEEEEECSHHHHHHH CS
  NAD_binding_1   89 kkeethvyvCGppgMikav 107 
                      ++++ +yvCG +   +av
     CCE31467.1 1015 WQKGARIYVCGSKHVSTAV 1033
                     89*********99887776 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.5e-06     0.009       2      68 ..     506     573 ..     505     594 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.5e-06
  Flavodoxin_5   2 ilYsSrdGqTkkiaeriaeelree.gelvdvedvekesedlesydavvigasvyygkllpelakFvek 68 
                   i+Y S+ G+ +  a+r+a   +++    ++++++++++++l +   v+i+++ y g+ ++++ +Fve 
    CCE31467.1 506 IFYGSNSGTCEALAQRVASDAARHgFRATSLAPLNEATKKLPKDRPVIIITASYEGQPPSNAIQFVEW 573
                   9*******************9999777888999999******************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1076 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 7206.04
//
Query:       CCE31468.1  [L=916]
Description: related to aspartate-tRNA ligase, cytosolic [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-72  243.3   0.0    4.8e-72  242.7   0.0    1.3  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    3.7e-15   55.7   0.1    6.2e-15   55.0   0.1    1.4  1  DUF2156          Uncharacterised conserved protein (DUF2156)
    3.4e-05   23.8   0.0    7.7e-05   22.6   0.0    1.6  1  tRNA_anti-codon  OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.7   0.0     8e-76   4.8e-72       4     312 ..     268     581 ..     265     583 .. 0.91

  Alignments for each domain:
  == domain 1  score: 242.7 bits;  conditional E-value: 8e-76
                  HHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE....-E-S-SHHHHHHHHHCTHSEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   4 lrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeff....aLtqspqlylellivagidrvfqi 97 
                   rl+ r+ldlr+++ ++ +r+rs vt+++r+ l+e+gf+ei+tP L+ s+te+ga  Fkv       ++f    +L+qspql +++ ++a ++rvf++
   CCE31468.1 268 NRLTSRILDLRHPSNQALFRIRSLVTRQFRQTLDEHGFVEINTPKLQPSATESGAAVFKV-------NYFgrnaFLAQSPQLAKQMSVSADFGRVFEV 358
                  58999*******************************************************.......77778888*********************** PP

                  EEEE--S--BTTB-S-CEEEEEEEEET-SCHH.HHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-S..SS-EEEEHHHHHHHHHTS-SS--HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2  98 araFRaEdsrtdrhlaEFtqieaemsfieeed.imqvleelikslvkevlessakdiefvirrnskdlk..kpfkrltykeaieklneigkdldkade 192
                  +++FRaE+s+t rhl+E+t +++em++  + + +++v++e++ks+++ v   + +  e ++r+ sk++k  ++   l++++ ++ l+  g d+  +d+
   CCE31468.1 359 GPVFRAENSNTHRHLTEYTGLDIEMAIQHDYHeVLDVIDEFLKSVFTAVYAMP-EVKEVQKRWPSKEFKwlQKTLILNFEDGVKMLRADGRDVPMEDL 455
                  *************************99866555****************5555.55555555555555522446689**********99777777777 PP

                  HHHHH.........HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCHHSSSGGGGHHHHHHHHCT- CS
                  xxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 193 ralvk.........keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklkskgldeeaeekfswylealeyGa 281
                      +         k +++ + + +fPa+ +pFy+ k+ +d+  t+s+D++i+g E+++G +Ri+d  el+++++  g++   e+ +++yl a+++Ga
   CCE31468.1 456 STPDEirlgelvreKYETDYYVLDKFPASARPFYTLKDAEDPFWTRSFDIFIRGQEICSGGQRINDATELRDSMRVAGIS---EDGMEDYLAAFDLGA 550
                  7777677777999899999999**********************************************************...*************** PP

                  -SEEEEEEEHHHHHHHHCT-SSGGGCSSS-X CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 282 pphgGlglGldRlvmlllgsesIrdviaFPk 312
                  pph+G glGl+R+v+++l++ ++r +++F +
   CCE31468.1 551 PPHAGAGLGLERIVAWMLELGDVRYASLFHR 581
                  **************************99965 PP

>> DUF2156  Uncharacterised conserved protein (DUF2156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1     1e-18   6.2e-15       6     298 .]     618     897 ..     613     897 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 1e-18
                 TSSGGGGHHHHHHCCHCCEEEECCTTEEEEEEEECTCEEEECS-EE.CCGHHHHHHHHHHHH.HHCTSEEEEEEE-HHHHHHHHHCT.EEEECCCEEEE CS
     DUF2156   6 rsgsedslsnlalwrdksyyfspsgdalvayrvkggvalalgdPvGdpeawpeaieeflela.aehgwrpafygvseelaellaelg.lsalrlgeeav 102
                 ++g  d++ + +l +  + ++  +  a++ y ++++ a++ gdP++d ++++e+  +fl+ + +e +++p+++ vs ++ ++la+ + +++l   ee +
  CCE31468.1 618 NYG--DASNTSWLDERFQIWRH-ASGAAIGYVKQDKFAMVTGDPLCDASQYKEVCSAFLKAViSEMKLTPVWMLVSYDVQKILAQQMrWRTLSCTEEQR 713
                 555..44444444455555555.89999******************************98652788******************9777*********** PP

                 EEHHHH.HTTSGGGHHHHHHHHHHHHCTECEEEEEGGGH-HHHHHHHHHHHHHHHHHTTCHHHHCCCHHHHCHHHHTSEEEEEEE.TTEEEEEEEEEEE CS
     DUF2156 103 vdledf.tLsGkkfrnvRnainraeraGytveverisdlspellaelkeiseeWlkqkeatEkgfslglfdelddldlrglvvrdeegrivAftsfepl 200
                 vd+ +  +  G   +      +r+er+G++++++++   +++ +++  e   +W +++  + k+  l  ++++ d++ r +++  ++g++ A++ + +l
  CCE31468.1 714 VDANKHhNTNGGGPK-----ARRVEREGVKIHEVKP---DADFRKRADEAISSWKANR--KGKQIHLTEVRPWVDPEHRRYYAAEKDGKVLAMVVLAKL 802
                 ******999998865.....689*************...89****************9..9************9999999998888************* PP

                 CTTTEEEEEEEEE-TT.STTHHHHHHHHHHHHCHHTT-SEEEEEEE................HHHHHHHHHHHHHTTTCHHHHHHHCT--CEEEEEEEE CS
     DUF2156 201 ngkdglsldlmRrdpdapnGlmefliaelaeelkeegveyvsLgfaplagl.geregagllerllrllleflerdygfegLrrfKlkyqPeweprYlay 298
                   k g+ +      p ++nG++e+li  ++ +        v +g+ +  ++   ++  gl +r+l+++++     +g++  + f +k+    e++Y++y
  CCE31468.1 803 SPKHGWQVKWALDFPGSVNGAIEVLIEYTLSTVSG----QVTFGVGVSEKMtPGEHLNGLRARFLATTYASIVDSLGLRRKAGFRSKFGALGEEVYICY 897
                 *7788888888888*******************93....4677778888888555567999************************************98 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.3e-08   7.7e-05       1      65 [.     166     240 ..     166     248 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.3e-08
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET..HHHHHHHTTS-TTSEEEEEEEEEECTTS.........S CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr..eeatklaenlkeGdvvrvtGrvkrrpgg.........e 65 
                      V++++r+ + + + ++k+ f+  rD t ++q vl r   ++ ++ e+l  +++v+v G +k+ p+          e
       CCE31468.1 166 VNFRARIATQR-QMSKKLDFLLFRDQTHTVQGVLSReyLDMVRWVEKLHSESLVQVHGVLKTPPEPvrsathsgvE 240
                      77899999995.66677888889*************999***********************97664444444334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 6224.71
//
Query:       CCE31469.1  [L=440]
Description: related to triacylglycerol lipase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-37  127.7   0.0    7.3e-37  127.3   0.0    1.2  1  Abhydrolase_3  alpha/beta hydrolase fold
    1.4e-07   30.8   0.1    4.7e-07   29.1   0.1    1.6  1  COesterase     Carboxylesterase family
    0.00022   21.9   0.2    0.00032   21.4   0.2    1.4  1  Abhydrolase_6  Alpha/beta hydrolase family
      0.001   18.6   0.0       0.17   11.4   0.0    2.3  2  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
       0.17   11.7   0.0       0.43   10.3   0.0    1.6  2  Abhydrolase_2  Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   0.0     2e-40   7.3e-37       1     209 [.     157     378 ..     157     380 .. 0.91

  Alignments for each domain:
  == domain 1  score: 127.3 bits;  conditional E-value: 2e-40
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardeg 96 
                    ++ +HGGG++lg+ + + +++  +  +++avv+ v+YrlAP +pfP+++ed+++a+ ++a++a+e+g+dp+ri+l G SaG++ a+   + ++d +
     CCE31469.1 157 VINLHGGGWILGQGTDDARWAGTVLGNVDAVVFTVNYRLAPSYPFPTPMEDCVDAIIQIASRASEFGIDPDRITLSGFSAGATNALTSWIVLQDPS 252
                    5789**********************************************************************************9999999998 PP

                    ---.........EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHS.S...GGGGGSTTTSGGGCS-..SST---EEEEEETT- CS
  Abhydrolase_3  97 epk.........vagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlyl.p...eadrddplaspllaed..lsglpptlvvvaefD 177
                    +++         + g++l+yP +d+ + +++   +++ l+ + +l++ ++dl+   y  p   +++r+dp++sp l +d  l++lp   +v +e+D
     CCE31469.1 253 RWNyklpsrppsILGLILFYPTLDV-TISRPGK-RQSCLRPERTLSPGMTDLIDASYFyPtipRDQRTDPRMSPGLVPDeiLKKLPHLHMVLCEYD 346
                    777999***************9988.4433333.234557889999999998887777655769999*******9997568*************** PP

                    TTHHHHHHHHHHHHHTT--EEEEEETTEETTG CS
  Abhydrolase_3 178 plrdegeayaerlraagvevelieyegmvHgf 209
                    +l  eg+++ erl+  + + +++ +eg+ H++
     CCE31469.1 347 MLLAEGIRFVERLENLNLPYNVRIVEGEGHAW 378
                    ******************************97 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   1.3e-10   4.7e-07      90     198 ..     141     240 ..     139     253 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.3e-10
                 EEEEEESSSSSTTSSEEEEEEE--STTTS-BGCG...S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEE CS
  COesterase  90 LnvytPkekkeakkklPVlVwihGggfqtgsase...ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdpe 185
                 + v+ P++  +   +   ++ +hGgg   g++++   + g++L +  + +v t+nYRl +           p    + D v A+  +    ++FG dp+
  CCE31469.1 141 VEVWNPSRI-SIGPR-AAVINLHGGGWILGQGTDdarWAGTVLGNV-DAVVFTVNYRLAPS---------YPFPTPMEDCVDAIIQIASRASEFGIDPD 227
                 578888764.55555.67899***********88888********9.***********984.........34444789********************* PP

                 EEEEEEETHHHHH CS
  COesterase 186 rvtlfGesAGaas 198
                 r+tl G sAGa+ 
  CCE31469.1 228 RITLSGFSAGATN 240
                 ***********75 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2     9e-08   0.00032       4     209 ..     160     378 ..      87     390 .. 0.59

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9e-08
                    E--GC.....G.....C.HHHHHHHHCCT....CEEEEE--.TTSTS-GGCS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.. CS
  Abhydrolase_6   4 lHGagssassW.....l.vapLaallaag....vhvlapDl.pGhGrsdpppldledladlaalldelaagggpvvlvGHSlGGalalaaaplalv 88 
                    lHG+g     W        a++a    +     v ++ + l p++ +++p+ + ++++ ++a  + e++ +++++ l G S G++ al    + + 
     CCE31469.1 160 LHGGG-----WilgqgTdDARWAGTVLGNvdavVFTVNYRLaPSYPFPTPMEDCVDAIIQIASRASEFGIDPDRITLSGFSAGATNALT---SWI- 246
                    46655.....543322121122111112211112222222222332444555555555555666666666***************9999...887. PP

                    EEEEES-............----TTTS----TTHHHHHHTT-CCCCH.CCH............S-HSCCCCHHHCCCCHCHCCCGHH.HHCCHHCH CS
  Abhydrolase_6  89 vgvlldp..........pptalpagllaaalelllallallrllawl.sre............plprlfladedadaawrarlarla.allaglgl 160
                      vl dp          p             + +l+l+  +++l    s +             l++++ +  da + + +  ++ + + ++++gl
     CCE31469.1 247 --VLQDPsrwnyklpsrP-------------PSILGLILFYPTLDVTiS-RpgkrqsclrperTLSPGMTDLIDASYFYPTIPRDQRtDPRMSPGL 326
                    ..8888844444433332.............222222222222111111.1112233332222233344443334333333333333133334556 PP

                    TTCCHHTT-TTGCEEECTT-CHHH...HCHHCCCH.STTEEETCE...SSS-H CS
  Abhydrolase_6 161 lpaaawadlpvpllvlggeDplvp...rllerlla.qagarlpvvlpgaGHlp 209
                     p + ++ lp + +vl++ D+l++   r++erl      + +  +++g GH++
     CCE31469.1 327 VPDEILKKLPHLHMVLCEYDMLLAegiRFVERLENlNLPYNV-RIVEGEGHAW 378
                    6777888888888999*****888445555555556677777.********43 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   4.6e-05      0.17      46      97 ..     206     262 ..     203     266 .. 0.74
   2 !    4.8   0.0    0.0048        17     158     191 ..     348     381 ..     342     394 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.6e-05
                   HHHHHHHHHH...HHTTS--GGGEEEEEETHHHH..HHHHHHHH-GGG-SEEEEESE CS
  Peptidase_S9  46 dDfiaaaeal...akegyvdserlaitGgSyGGy..ltgaalnqrpdlFkaavaevp 97 
                   +D+++a+  +   a+e+ +d++r+ + G S+G +  lt +++ q p+++ + + ++p
    CCE31469.1 206 EDCVDAIIQIasrASEFGIDPDRITLSGFSAGATnaLTSWIVLQDPSRWNYKLPSRP 262
                   555555544422246668**************97446889*******9998776665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0048
                   -THHHHHHHHHHH--S-SEEEEEETTS-SSTTSS CS
  Peptidase_S9 158 ppaealklvaaLqkkgknvlllifpdegHgvgkp 191
                    +ae++++v++L++ + ++ ++i  +egH   kp
    CCE31469.1 348 LLAEGIRFVERLENLNLPYNVRIVEGEGHAWDKP 381
                   67899************************87766 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00012      0.43      90     128 ..     212     250 ..     204     254 .. 0.79
   2 ?   -3.2   0.0       1.7     6e+03     172     201 ..     349     378 ..     334     380 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
                    HHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHT-SS CS
  Abhydrolase_2  90 leelidaelkkgipssriiigGFSqGaalalylaltlpk 128
                    + ++     + gi+ +ri + GFS Ga  al + + l+ 
     CCE31469.1 212 IIQIASRASEFGIDPDRITLSGFSAGATNALTSWIVLQD 250
                    555666666778****************99998877665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.7
                    HHHHHHHHHHHHTTS-GEEEEEETT--SS- CS
  Abhydrolase_2 172 lalgkaakevlkkllkkvelksyeglaHsi 201
                    la g ++ e l++l+  ++ +++eg +H+ 
     CCE31469.1 349 LAEGIRFVERLENLNLPYNVRIVEGEGHAW 378
                    577889999999999999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3326.71
//
Query:       CCE31470.1  [L=205]
Description: probable het-c2 protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-45  154.3   0.0    4.1e-45  153.7   0.0    1.3  1  GLTP             Glycolipid transfer protein (GLTP)
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.38   10.8   0.0    1.7  1  IKKbetaNEMObind  I-kappa-kinase-beta NEMO binding domain


Domain annotation for each model (and alignments):
>> GLTP  Glycolipid transfer protein (GLTP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.7   0.0   4.6e-49   4.1e-45       1     148 [.      33     171 ..      33     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 153.7 bits;  conditional E-value: 4.6e-49
                 -BHHHHHHHHHHHHHHHHHT-G.GGGGHHHHTHHHHHHHHHHTT....T-SBHHHHHHHHHHTT-TT..STT-HHHHHHHHHHHHHHHHHHHHHHH... CS
        GLTP   1 veteeFleacrelvklfdllGs.afsfvksDvegniekleeaykknpeeystleslveaEkeeglakkkkkesatrallwLkRgLeflaeflekllkdp 98 
                 v t++Fl+a+++l ++fd +G+ afs+vk+D+ gn++kl+e+ ++ p+e+++l++l+++E+++      kk++at++llwL RgL+f++ +l+++l+d+
  CCE31470.1  33 VATTQFLDAVESLATIFDVMGPvAFSPVKADMLGNVKKLRERQLAAPTESENLQDLCRNELRT------KKHTATEGLLWLVRGLDFTCSALSSNLADT 125
                 6799********************************************************965......3899***********************999 PP

                 .HTB-...HHHHHHHHHHHTGGGS-HHHHHHHHHHGGG--BHHHHHHHTT CS
        GLTP  99 kessreelselatkAYektLakyHgwlvrkaaklamkalPsrkdflkklg 148
                 +    +els++++ AY+ tL+++H+++v++++++am+ +P+rkdf+ klg
  CCE31470.1 126 N----QELSASFRAAYTHTLKPFHSFIVKPIFTVAMSGCPYRKDFYDKLG 171
                 9....9******************************************97 PP

>> IKKbetaNEMObind  I-kappa-kinase-beta NEMO binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.2e-05      0.38      11      30 ..     115     134 ..     113     135 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.2e-05
  IKKbetaNEMObind  11 LsqLtslmqettkeqdsSlm 30 
                      +s L+s + +t++e + S++
       CCE31470.1 115 CSALSSNLADTNQELSASFR 134
                      9*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1691.12
//
Query:       CCE31471.1  [L=876]
Description: related to phospholipase D [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-14   54.5   0.2      5e-06   26.4   0.1    3.7  3  PLDc_2    PLD-like domain
    2.1e-14   53.0   1.7      6e-07   29.4   0.1    2.6  2  PLDc      Phospholipase D Active site motif


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.7e-05      0.16       5     101 ..     112     237 ..     109     247 .. 0.64
   2 !   11.7   0.0     2e-05      0.18       3      43 ..     407     460 ..     405     492 .. 0.93
   3 !   26.4   0.1   5.6e-10     5e-06      79     123 ..     662     708 ..     583     712 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
      PLDc_2   5 iksAkksidiatyyf...........vsdrei.ldallk.aakrgvkvrilldskkd.....................dagavdeaslkelkellleag 69 
                 +++A++si+i+   +           + ++   ld++lk +a+ gvk+ + + ++ +                     ++g  + +  ++ ++ + e+ 
  CCE31471.1 112 LEQAQESIYICDWWLspelflrrppyHKQE-YrLDQILKrKAEAGVKIYVSVYKEVEaaltcnsrhtkhaldalcpegTPGHGNIRVMRHPDHNVFENA 209
                 889999999999999777777777743333.24777755599***999998888665877776666666665555555222223333333333333333 PP

      PLDc_2  70 vevrvfetllgslHaKlylidgktvivGSsNl 101
                 +++ v+       H+K+++id  ++++G+  l
  CCE31471.1 210 ADMTVY----WAHHEKFIVIDYAMAFIGGLDL 237
                 333332....345***************9765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2e-05
      PLDc_2   3 qliksAkksidiatyyf.............vsdreildallkaakrgvkvrill 43 
                 + i++A++ ++i +++f             v  +++++a+++aa++g+k ri++
  CCE31471.1 407 EIIRKAEHFVYIENQFFitatgdqqapihnVIGQAMVEAVVRAAQEGRKFRIIV 460
                 679*****************9999999999999999*****************8 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 5.6e-10
      PLDc_2  79 lgslHaKlylidgktvivGSsNltkrgl..dlnlElnvviedkelak 123
                 +  +H+Kl++ d+++vi GSsNl++r+   d++ El +v+ed + ++
  CCE31471.1 662 ELYVHSKLLIADDRIVICGSSNLNDRSQlgDHDSELSIVMEDTRKIQ 708
                 3578************************7777778888888875444 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   6.7e-11     6e-07       3      28 .]     216     241 ..     215     241 .. 0.97
   2 !   22.4   0.2   1.1e-08   9.5e-05       5      28 .]     665     688 ..     663     688 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 6.7e-11
                 BEE---EEEETTTEEEEE---SSHHH CS
        PLDc   3 gthHqKivivDdrvafvGgaNLcdgr 28 
                 + hH+K++++D + af+Gg++Lc gr
  CCE31471.1 216 WAHHEKFIVIDYAMAFIGGLDLCFGR 241
                 99*********************997 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 1.1e-08
                 E---EEEETTTEEEEE---SSHHH CS
        PLDc   5 hHqKivivDdrvafvGgaNLcdgr 28 
                 +H+K +i Ddr+++ G++NL+d++
  CCE31471.1 665 VHSKLLIADDRIVICGSSNLNDRS 688
                 7*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.78
# Mc/sec: 3411.14
//
Query:       CCE31472.1  [L=1023]
Description: related to protein BRO1, required for normal response to nutrient limitation [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.3e-128  428.4   2.6   2.3e-128  428.4   2.6    1.9  3  BRO1            BRO1-like domain
    5.3e-74  249.2  22.7    5.3e-74  249.2  22.7    1.8  2  ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
  ------ inclusion threshold ------
       0.81    8.7  10.6      0.029   13.4   2.0    2.4  2  DUF2252         Uncharacterized protein conserved in bacteria
        2.1    8.9   5.1        1.2    9.7   0.2    3.1  2  PhoU            PhoU domain


Domain annotation for each model (and alignments):
>> BRO1  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.4   2.6    5e-132  2.3e-128       1     389 []       6     393 ..       6     393 .. 0.95
   2 ?   -3.8   0.2       0.9     4e+03     285     318 ..     514     545 ..     507     552 .. 0.63
   3 ?   -3.1   0.7      0.57   2.6e+03      63     111 ..     634     694 ..     587     707 .. 0.52

  Alignments for each domain:
  == domain 1  score: 428.4 bits;  conditional E-value: 5e-132
                 XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX CS
        BRO1   1 llsiplKkteekevdlkkpLknyIsetygsqdpeafeddlaelnklRqdavrksankdsesglelllkYyaqLellelrfpieeqslkveFtWydafss 99 
                 ++s+p+K t+e  vd+  pLk+yI+e+yg +dpe++++++a+ln+lRqd +r+ a+k+s+sg+++l++Yy+qLell+lrfp++eq++k+ FtW+daf+ 
  CCE31472.1   6 MISVPMKATNE--VDWIAPLKSYIKESYG-DDPERYAEECATLNRLRQD-MRG-AGKESTSGRDMLYRYYGQLELLDLRFPVDEQHIKIAFTWFDAFT- 98 
                 9********66..***************8.99*****************.556.78889***********************98999**********5. PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1 100 skkvtqsslafEkasvLFniaalysqlaasqnrstdeglkrackyfqqAAgvfqylkenflhapteeesedlspetlkaLeklmlAqAqecflekaikd 198
                 +k++tq+slafEkasv+Fni a++s+ a+ qnr +++ lk a++++q++Ag+++y++enflhap    s dls+et+k L ++mlAqAqe+flek + d
  CCE31472.1  99 QKPTTQYSLAFEKASVIFNISAVLSCYAVYQNRGEEALLKVAYHSLQASAGMYTYINENFLHAP----SFDLSRETVKSLISIMLAQAQEVFLEKQVAD 193
                 99**************************************************************....9***************************99* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....... CS
        BRO1 199 nkkdsliaKlaaqvaelYeealealkkselidekeevlkklldksWikhvqvKashfkAlaqyrqalaaeeakkyGeeiarlqkAlellkea....... 290
                 +kk++l+aKla+q+  lY +++e +        +++v++++++k W+++vq+Ka++  ++aqy+q+l+++e+k++G +i+rlq A++l+kea       
  CCE31472.1 194 QKKPGLLAKLASQAGYLYGQSIEGV--------QDNVNRAIFEKVWLTMVQIKANLLDSIAQYYQSLVDNESKQHGIAIGRLQVAETLAKEAerqarsf 284
                 *************************........77788889***************************************************8888888 PP

                 .........X...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXHHHHHHH CS
        BRO1 291 .........lkskkaeelledlkglkdvveeklkeaekDNdlIYheevPsesslpeikkaslvkaipleeeke.eekseesgkdlFakLvPlsvheaas 379
                          l+ +  + l++  k++ ++v++kl+e  ++Nd+IYh+ vP+e+sl++i k+s++kaip++e ++  ++++++g+dlFak+vPl+v+e+as
  CCE31472.1 285 pssvpvnsnLSADCGSILHDMSKRHLSTVQDKLRETVRENDYIYHHVVPAEASLAPIAKMSAAKAIPVTELYAgLDMQRITGPDLFAKIVPLAVTESAS 383
                 877777665544555555999***********************************************9988889************************ PP

                 HHHHHHHHHH CS
        BRO1 380 ayserkaklv 389
                 +y+e+kakl+
  CCE31472.1 384 LYDEEKAKLI 393
                 ********97 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.9
                 XXXXXXX...........XXXXXXXXXXXXXXXX CS
        BRO1 285 ellkealkskkaeelledlkglkdvveeklkeae 318
                 e+l+ea k  + ++l+ +l+++++ + e +++a+
  CCE31472.1 514 EALDEAAK--SDGQLATSLRQHENEIDEMRRAAQ 545
                 33444432..234677788888888888777776 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.57
                 XXXXXXXXXXX.XXXXXXX.XX..........XXX..XXXXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1  63 lelllkYyaqL.ellelrf.pi..........eeq.slkveFtWydafssskkvtqsslafE 111
                  + + +Y +qL e+  ++f p           ++q  ++++ +++d+++ +k+v +++ ++E
  CCE31472.1 634 KKSIANYENQLfEQELEKFiPHqnrllqaihkQSQlMKELTVKFNDLLQ-DKQVRSEQSKYE 694
                 3334555555522222333333334444444433433446666666663.555666666666 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.48   2.2e+03      73     124 ..     237     289 ..     216     329 .. 0.47
   2 !  249.2  22.7   1.2e-77   5.3e-74       3     295 .]     434     752 ..     432     752 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.48
  ALIX_LYPXL_bnd  73 ltaelraelqk.yreileeAsesDkivrqklqenkedlelLsgpeeeleaalp 124
                       a+l + +++ y++++++ s+  +i   +lq  +   ++ ++++++  +++p
      CCE31472.1 237 IKANLLDSIAQyYQSLVDNESKQHGIAIGRLQVAETLAKEAERQARSFPSSVP 289
                     44555555555334444444455555555555444444444444444444444 PP

  == domain 2  score: 249.2 bits;  conditional E-value: 1.2e-77
  ALIX_LYPXL_bnd   3 PpsllekaeevrsqgglqrlekllqdlqelkerneeiLdeieklLdeEesedeklrakygtrWtrqpSseltaelraelqkyreileeAsesDki 97 
                     ++++++++ +v+   ++++  ++++ l+e ke++ ++Ld+i+k+Ld Ee ++ek+ra y+ +W++qpS+++t++lr++++kyre+l+eA++sD++
      CCE31472.1 434 DEDFRQWCCDVA---DHDNPAEIFARLREEKESIIAMLDNISKQLDLEEITCEKMRATYEGEWNQQPSARSTTTLRSDVRKYREALDEAAKSDGQ 525
                     689*********...9******************************************************************************* PP

  ALIX_LYPXL_bnd  98 vrqklqenkedlelL.sgpeeeleaalpssssa.........................aasesveeqirklrsllekldelkaereqllkdlkek 166
                     +   l++++++++++  + +e + ++l +++ +                         ++++s ++qi+k++++l+kl+ +k+er+q+lkdlkek
      CCE31472.1 526 LATSLRQHENEIDEMrRAAQEGTVDQLFQNAVTrahvrgshaissleaepnlldtdfgESTPSIKDQINKVEEILKKLNLIKRERNQVLKDLKEK 620
                     ***************7776666666655322223445556666677777777665554449********************************** PP

  ALIX_LYPXL_bnd 167 aendDitpklltekkrdiaanefealfeeelekydplqeqleqslakqeellkeiqeaneefeqskksdseq..s...qrqreevlqkleaaydk 256
                     ++ndDi+++l+++kk+ ia n++++lfe+elek+ p+q++l q+++kq++l+ke++  +++++q+k+++seq  +   qrqr++v+ k+++ay++
      CCE31472.1 621 VHNDDISQVLILNKKS-IA-NYENQLFEQELEKFIPHQNRLLQAIHKQSQLMKELTVKFNDLLQDKQVRSEQskYeavQRQRSSVMLKYKRAYQE 713
                     ****************.77.888*************************************************763677***************** PP

  ALIX_LYPXL_bnd 257 ykelksnleeglkFYndltelleklqkkvkdfvfaRrtE 295
                     + +++s+l+ ++ +Y+d  e++e+lqk+v++fv +Rr E
      CCE31472.1 714 FLDMESGLQGAKIWYSDTRETVESLQKNVETFVLNRRAE 752
                     *************************************98 PP

>> DUF2252  Uncharacterized protein conserved in bacteria (DUF2252)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.0   6.5e-06     0.029      93     213 ..     491     611 ..     487     631 .. 0.82
   2 ?   -0.8   1.6      0.13     6e+02     100     173 ..     697     763 ..     680     798 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.5e-06
     DUF2252  93 arenglsekdakelvraavesYrealrdlaerealdewyeridvelleeatseeakgvvrkalekarkrtreklldklteleegkrrikddppkllrls 191
                 ++ n+ +++ +++ +r+ v++Yreal++ a+++ + +   r ++++++e++++ ++g+v++++++a +r++++    +++le + + + +d  + ++  
  CCE31472.1 491 GEWNQQPSARSTTTLRSDVRKYREALDEAAKSDGQLATSLRQHENEIDEMRRAAQEGTVDQLFQNAVTRAHVRGSHAISSLEAEPNLLDTDFGESTPSI 589
                 6778889999999********************99888877777*****************************99999999966666666888888888 PP

     DUF2252 192 eaereaieaalesyaetlpadr 213
                 +++ +++e++l++ +   ++ +
  CCE31472.1 590 KDQINKVEEILKKLNLIKRERN 611
                 8888888888887655444443 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.13
     DUF2252 100 ekdakelvraavesYrealrdlaerealdewyeridv..elleeatseeakgvvrkalekarkrtreklldkltel 173
                 + ++++++ ++ ++Y+e l+  ++ +  + wy+ +++  e        + ++ v++++ + r +  ++ll+++ e 
  CCE31472.1 697 QRQRSSVMLKYKRAYQEFLDMESGLQGAKIWYSDTREtvE--------SLQKNVETFVLNRRAE-GAQLLQQIQEN 763
                 5677889999999*******99999999***955444332........2233333222222222.12222222222 PP

>> PhoU  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2   0.00026       1.2      15      59 ..     515     559 ..     509     573 .. 0.76
   2 ?   -1.9   1.1         1   4.7e+03      25      42 ..     625     642 ..     589     677 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00026
                 HHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-S CS
        PhoU  15 alealeekdtelarevierddeidrlekeiersllealakrqpla 59 
                 al+  ++ d  la  +++ ++eid+++++ ++  +  l+++   +
  CCE31472.1 515 ALDEAAKSDGQLATSLRQHENEIDEMRRAAQEGTVDQLFQNAVTR 559
                 5555578899********************999999997755443 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHHHHHH CS
        PhoU  25 elarevierddeidrlek 42 
                 ++ + +i + ++i ++e+
  CCE31472.1 625 DISQVLILNKKSIANYEN 642
                 233333444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1023 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1925  (0.107368); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.50
# Mc/sec: 6195.94
//
Query:       CCE31473.1  [L=496]
Description: probable L-lactate dehydrogenase (cytochrome) [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.5e-122  408.9   0.1   1.9e-122  408.7   0.1    1.1  1  FMN_dh        FMN-dependent dehydrogenase
    1.2e-22   79.8   0.2    2.4e-22   78.9   0.2    1.5  1  Cyt-b5        Cytochrome b5-like Heme/Steroid binding domain
    1.5e-07   30.9   0.3    2.8e-07   30.0   0.1    1.4  2  Glu_synthase  Conserved region in glutamate synthase
    0.00019   20.5   0.2    0.00093   18.3   0.1    2.0  2  IMPDH         IMP dehydrogenase / GMP reductase domain
    0.00092   18.7   0.2     0.0015   18.0   0.2    1.3  1  NMO           Nitronate monooxygenase
  ------ inclusion threshold ------
        0.2   11.1   1.6        1.1    8.6   0.1    2.4  3  His_biosynth  Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.7   0.1  6.2e-126  1.9e-122       1     347 [.     118     460 ..     118     461 .. 0.93

  Alignments for each domain:
  == domain 1  score: 408.7 bits;  conditional E-value: 6.2e-126
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS CS
      FMN_dh   1 ArkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvast 99 
                 Ar+ ++k a+ y+++ga+de+t+ren++af+ri +rprvl++v+++dlstt+lG+k+s+P+++ +++l kl +p+ge+ l+raa+++++++++ t+as+
  CCE31473.1 118 ARRVMKKTAWGYYSSGADDEITMRENHNAFHRIWFRPRVLVNVENIDLSTTMLGTKCSIPFYVTATALGKLGNPEGEVVLTRAAHTHNVIQMIPTLASC 216
                 899************************************************************************************************ PP

                 -HHHHHHHHT..T-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH..THHHHHHCC CS
      FMN_dh 100 sleevaaaae..gplwfqlyvpkdrelteellkraeaagykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaealkkasaaaefvg 196
                 s++e+++a +  + +w qlyv+kdre+t++++++ae+ g+k l++tvD+p lg+Re+d+r++fs++++ +    +q+  +++ +++a       a+ ++
  CCE31473.1 217 SFDEIVDARRgdQVQWLQLYVNKDREITRKIVQHAEKRGCKGLFITVDAPQLGRREKDMRSKFSAEQGSS----IQSGHETDNSQGA-------ARAIS 304
                 *****996442259**************************************************999944....3333333333333.......37899 PP

                 CHB-TC--HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHH.....HHHH..SS-EEEESS--SHHHHHHHH CS
      FMN_dh 197 kqldpsltwddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpei.....veavggrievlvDgGirrGsDvlkAl 290
                  ++dpsl+w+d++w+++ t++p+++KGv+++ed+ rav++G+ g+v+SNHGGRqld+a + +++L e      ++ ++++i+v++DgG+rr +D+lkAl
  CCE31473.1 305 GFIDPSLCWEDVAWFKSITRMPIILKGVQCVEDVLRAVQVGARGVVLSNHGGRQLDTARSGVEILAETmpvlrAQGLEDQIDVFIDGGVRRATDILKAL 403
                 ******************************************************************99555444555579******************* PP

                 HTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHCGGEE CS
      FMN_dh 291 alGAdavllGRpflyglaagGeeGvervleilraelertmallGvksvaeldrslls 347
                 +lGA++v++GRpfly+++a+G+ Gver++++l++e+e +m+llG++sv++l++sl++
  CCE31473.1 404 CLGARGVGIGRPFLYAMSAYGQPGVERAMQLLKDEMEMNMRLLGCASVRDLNPSLVD 460
                 ******************************************************985 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.2     8e-26   2.4e-22       3      73 ..       6      76 ..       4      77 .. 0.96

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 8e-26
                HHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHG.GEEEEE CS
      Cyt-b5  3 eelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkk.ylvGkl 73
                ++++khn++n++wv+i+g  YDv++fl +hpGg+++ilk+aGkDate+f  + h ++ + k+l+k  ++Gk+
  CCE31473.1  6 SDIEKHNDENSCWVIIHGYAYDVTDFLPEHPGGSGVILKHAGKDATEEFDPI-HPPDTLDKYLDKsKHLGKV 76
                5789************************************************.************9999997 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.7   5.1e+03     282     302 ..     331     351 ..     327     354 .. 0.82
   2 !   30.0   0.1   9.3e-11   2.8e-07     259     310 ..     369     420 ..     358     424 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.7
                   S--SHHHHHHHHHHT-SEEE- CS
  Glu_synthase 282 glktgadvvkalalGAdavgi 302
                   g+++ +dv+ a+ +GA  v +
    CCE31473.1 331 GVQCVEDVLRAVQVGARGVVL 351
                   678999*********987765 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 9.3e-11
                   HHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHT CS
  Glu_synthase 259 laevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigtaalial 310
                   lae+  +l+++gl d++++++dGg++ ++d++kal lGA  vgig+  l a+
    CCE31473.1 369 LAETMPVLRAQGLEDQIDVFIDGGVRRATDILKALCLGARGVGIGRPFLYAM 420
                   789999****************************************999998 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.17   5.1e+02     215     235 ..     331     351 ..     314     357 .. 0.80
   2 !   18.3   0.1   3.1e-07   0.00093     205     239 ..     382     416 ..     361     455 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.17
                 ---SHHHHHHHHHTT-SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 215 GikysgdivkAlaaGadavml 235
                 G++  +d+ +A+ +Ga  v+l
  CCE31473.1 331 GVQCVEDVLRAVQVGARGVVL 351
                 7999************99987 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 3.1e-07
                 TCT-EEEEES---SHHHHHHHHHTT-SEEEESCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 205 kagvpviaDGGikysgdivkAlaaGadavmlGsll 239
                 + ++ v  DGG++   di kAl++Ga  v +G+ +
  CCE31473.1 382 EDQIDVFIDGGVRRATDILKALCLGARGVGIGRPF 416
                 446999*************************9866 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2     5e-07    0.0015     144     268 ..     333     459 ..     319     486 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5e-07
         NMO 144 ssvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd......iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdakda 236
                   v+++  + + Ga  +++  ++ GG q + +    g   L ++++   +      i v   GG+ ++ ++  aL+lGA gv ig  fL +  +  ++ 
  CCE31473.1 333 QCVEDVLRAVQVGARGVVL--SNHGGRQLDTARS--GVEILAETMPVLRAqgledqIDVFIDGGVRRATDILKALCLGARGVGIGRPFLYAMSAYGQPG 427
                 5566666666666666666..4677777743333..3333333333222244667799999****************************9998887777 PP

         NMO 237 hkkklleaklddtelt.savsGrpaRalatell 268
                 +++++   k d++e+  +  +  + R l+  l+
  CCE31473.1 428 VERAMQLLK-DEMEMNmRLLGCASVRDLNPSLV 459
                 776654433.33333303333355666665555 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         2   5.9e+03     128     167 ..     222     262 ..     222     263 .. 0.63
   2 ?    0.9   0.0     0.089   2.6e+02     191     219 ..     324     351 ..     315     354 .. 0.74
   3 ?    8.6   0.1   0.00038       1.1      73     102 ..     384     413 ..     359     421 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2
                   EEEEEC.....EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEE CS
  His_biosynth 128 iDarrg.....ykvaikgwreetgldavelakkleelgageillt 167
                   +Darrg      ++++++ re     + ++++ +e++g++ + +t
    CCE31473.1 222 VDARRGdqvqwLQLYVNKDREI----TRKIVQHAEKRGCKGLFIT 262
                   5777755555556666666665....5677888888888776655 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.089
                   SSEEEEESS--SHHHHHHHHHTTCSEEEE CS
  His_biosynth 191 kipviasGGvgsledlkelksegvdaviv 219
                   ++p+i   Gv+ +ed+ ++++ g+++v++
    CCE31473.1 324 RMPIIL-KGVQCVEDVLRAVQVGARGVVL 351
                   556555.4799999999999999888875 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00038
                   SSEEEEESSSSSHHHHHHHHHCT-SEEEES CS
  His_biosynth  73 fipvqvGGGIrsledveelleagadkviig 102
                   +i+v ++GG+r+  d+ ++l +ga+ v ig
    CCE31473.1 384 QIDVFIDGGVRRATDILKALCLGARGVGIG 413
                   588999999999999999999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3268.19
//
Query:       CCE31474.1  [L=1003]
Description: related to protein CTF18 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-10   42.2   0.0    2.3e-10   41.0   0.0    1.6  1  AAA              ATPase family associated with various cellul
    1.7e-06   28.3   0.0    5.3e-06   26.7   0.0    1.8  1  AAA_22           AAA domain
    7.8e-06   25.9   0.0    2.1e-05   24.6   0.0    1.7  1  Rad17            Rad17 P-loop domain
    7.2e-05   22.8   0.0    0.00015   21.8   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
    7.3e-05   22.6   0.0    0.00014   21.7   0.0    1.4  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    9.2e-05   22.6   0.0    0.00035   20.8   0.0    2.1  1  AAA_33           AAA domain
    0.00052   20.4   1.2     0.0094   16.3   0.0    3.1  4  AAA_16           AAA ATPase domain
      0.003   17.6   0.0     0.0066   16.5   0.0    1.5  1  AAA_14           AAA domain
     0.0053   16.5   0.0       0.01   15.5   0.0    1.4  1  AAA_24           AAA domain
     0.0096   15.6   0.0      0.023   14.4   0.0    1.5  1  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.027   15.0   0.0      0.082   13.5   0.0    1.8  1  AAA_18           AAA domain
      0.032   13.4   0.0      0.058   12.6   0.0    1.3  1  NB-ARC           NB-ARC domain
      0.038   13.9   0.0       0.11   12.4   0.0    1.8  1  NTPase_1         NTPase
      0.071   12.6   0.0       0.16   11.5   0.0    1.5  1  BPL_LplA_LipB_2  Biotin/lipoate A/B protein ligase family
      0.079   13.5   0.2       0.78   10.3   0.0    2.6  2  ABC_tran         ABC transporter
      0.096   12.7   0.0       0.22   11.6   0.0    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.16   11.9   0.0       0.36   10.7   0.0    1.5  1  RsgA_GTPase      RsgA GTPase
       0.19   11.2   0.0        1.7    8.1   0.0    2.5  3  AAA_7            P-loop containing dynein motor region
        0.2   12.0   0.6       0.86    9.9   0.2    2.4  2  AAA_19           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   2.4e-13   2.3e-10       1      74 [.     293     378 ..     293     417 .. 0.78

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 2.4e-13
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.......STTHHHHHHHHHHHHHHHTS.....TSEEEEEETGGGHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk.......yvgesekkirelfkeakeka.....kpsilfiDEidalaksr 74 
                 ++l+GppG GKT+la+  a+++g e+le+++s+ +s          + + +++++++++  +       kp+++++DE+d  ++ +
  CCE31474.1 293 LMLTGPPGLGKTTLAHVCARQAGYEVLEVNASDDRSRdvvnnriRTSLGTESVKNVVNNRNSDGsqkmaKPVCVVVDEVDGAVSGS 378
                 589********************************778999999555555556666655432224456799*********998887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   5.7e-09   5.3e-06       4     102 ..     289     373 ..     286     397 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 5.7e-09
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseell.ealeqalraravielliiDEaq 101
                 +++il++tG++G GKTtl+   ++q+         + ev++v+++ + s++ + +++   lg        s + ++ ++  + +++ a+++++++DE++
  CCE31474.1 289 HRKILMLTGPPGLGKTTLAHVCARQA---------GYEVLEVNASDDRSRDVVNNRIRTSLGT------ESVKNVVnNRNSDGSQKMAKPVCVVVDEVD 372
                 689**********************9.........*************99999*********5......45667775777777777777999*****98 PP

      AAA_22 102 h 102
                  
  CCE31474.1 373 G 373
                 5 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.2e-08   2.1e-05       8      79 ..     253     323 ..     247     349 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.2e-08
       Rad17   8 lWfekykPekaeelavhkkkieevkewlkadvLesrkkr.iLLisGPsGCgkstvvkvLskelgiklrewlnp 79 
                 +W+ ++ P      a  k+ki   +  ++ +v e++++r iL+++GP+G gk+t  +v +++ g+++ e  n+
  CCE31474.1 253 RWLKRWDPVVFPGQARSKHKIAR-RPGMNQQVEEEKPHRkILMLTGPPGLGKTTLAHVCARQAGYEVLEV-NA 323
                 58888888888888888999965.778999******9999**************************9985.44 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.5e-07   0.00015       2      75 ..     293     372 ..     292     376 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.5e-07
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------......G-SEEEEESGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar......egeilvlDEve 75 
                 ++L GppG gK++la   a+  + ev++v+ ++d +++ +  r++++ gt+s ++ +  r+        ++  +v+DEv+
  CCE31474.1 293 LMLTGPPGLGKTTLAHVCARQAGYEVLEVNASDDRSRDVVNNRIRTSLGTESVKNVVNNRNSDgsqkmaKPVCVVVDEVD 372
                 79*******************************************97666666555544444466677688888888887 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.5e-07   0.00014      32      61 ..     286     318 ..     261     343 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.5e-07
      RuvB_N  32 aldh...vllyGpPGlGkttlakiiakelgvkl 61 
                 +  h   ++l+GpPGlGkttla++ a++ g ++
  CCE31474.1 286 EKPHrkiLMLTGPPGLGKTTLAHVCARQAGYEV 318
                 33333326799***************9998776 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   3.7e-07   0.00035       2      58 ..     293     352 ..     292     370 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.7e-07
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdt...lrrrlfgtdqqsktdytrvldrlyqi 58 
                 ++l G+pG GK+tla+  +++ g+++l+ ++    +r ++++  ++      v++ ++++
  CCE31474.1 293 LMLTGPPGLGKTTLAHVCARQAGYEVLEVNAsddRSRDVVNNRIRTSLGTESVKNVVNNR 352
                 7999*******************9999765522255566655544444444455555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.89   8.4e+02      35      87 ..     143     198 ..     139     243 .. 0.65
   2 !   16.3   0.0     1e-05    0.0094      24      61 ..     288     324 ..     279     355 .. 0.74
   3 ?   -1.6   0.0       3.2   3.1e+03     128     147 ..     355     374 ..     334     380 .. 0.74
   4 ?   -3.1   0.1       9.4   8.9e+03     113     138 ..     760     792 ..     735     793 .. 0.47

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.89
      AAA_16  35 vGKsslvrellralekdg.gif.lrgkcdqlesaipy..salaqalareellrqlld 87 
                 +GKs+ v++ + ++ +++  i+ +r ++++ +++++y  + + +++ ++   ++ + 
  CCE31474.1 143 SGKSATVQQRKASVVASYeSIVaARSRTKEGRAKRSYygIDIHELI-NDAATEAANK 198
                 7******999999999965666577777777666666432255555.4222222222 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1e-05
      AAA_16  24 p..elvllsGesGvGKsslvrellralekdggiflrgkcd 61 
                 p   +++l+G++G GK++l+  ++r++  +   +l+ ++ 
  CCE31474.1 288 PhrKILMLTGPPGLGKTTLAHVCARQAGYE---VLEVNAS 324
                 45589********************99988...4333333 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.2
      AAA_16 128 allsrderplvlvlDdlqwa 147
                 + +++ ++p+ +v+D+++ a
  CCE31474.1 355 DGSQKMAKPVCVVVDEVDGA 374
                 56677789********9966 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 9.4
      AAA_16 113 gaea......srllellkrll.allsrderplv 138
                 + +       ++++ +l   l +l s+d +p+v
  CCE31474.1 760 PTLTrsfrspEDIATELLPYLmRLVSPDVKPVV 792
                 222233334455655555555566666666666 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     7e-06    0.0066       2      73 ..     290     371 ..     289     379 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7e-06
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe........kllelileklke.......ekktylflDEi 73 
                 rkil++tG+   GKTtl++ ++++      ++l++n  d+r ++  +++        ++ +++ ++  +        k  +++ DE+
  CCE31474.1 290 RKILMLTGPPGLGKTTLAHVCARQAG---YEVLEVNASDDRSRDVVNNRirtslgteSVKNVVNNR--NsdgsqkmAKPVCVVVDEV 371
                 79********************9999...9*******99999665444323333333444444444..0346777778888999998 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.1e-05      0.01       4      79 ..     292     376 ..     289     381 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
      AAA_24   4 kiliyGpsgiGKTtlakel....gpkplfidtek.Glksldadkfpdie...swedfldevvel....aaeladyktlviDtidelee 79 
                  ++++Gp+g GKTtla       g+++l ++  +  ++++ ++++   +   + e +++ v+      +++ a+   +v+D +d +++
  CCE31474.1 292 ILMLTGPPGLGKTTLAHVCarqaGYEVLEVNASDdRSRDVVNNRI---RtslGTESVKNVVNNRnsdgSQKMAKPVCVVVDEVDGAVS 376
                 5799***********998888778888888764435555555555...4455555555555555555999999999********9986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.4e-05     0.023      18      97 ..     290     371 ..     284     376 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.4e-05
      AAA_30  18 drvavltGpAGtGKttalkalreaweaaggrvi.glAptgkaAkvLaeelg..ieastiakllkrlk..grarlepgtllivDEa 97 
                 +++ +ltGp+G GKtt+  + +   ++ag++v+ + A+  +  +v+++ +   + ++++++++++ +  g +++++  +++vDE+
  CCE31474.1 290 RKILMLTGPPGLGKTTLAHVCA---RQAGYEVLeVNASDDRSRDVVNNRIRtsLGTESVKNVVNNRNsdGSQKMAKPVCVVVDEV 371
                 56889***********877664...5668988856788888888888755522689999999977779866788888*******6 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.7e-05     0.082       2      35 ..     294     335 ..     293     373 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.7e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf........gvnlrdvaken 35 
                 +ltG+pG GKttla+  ++  g+         +++rdv+ ++
  CCE31474.1 294 MLTGPPGLGKTTLAHVCARQAGYevlevnasDDRSRDVVNNR 335
                 69***************9999888887777777777776664 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.2e-05     0.058      13      43 ..     283     313 ..     279     362 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.2e-05
                 HCTTTSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  13 lekdelqslvvalvGmgGvGKttlakqilnk 43 
                 +e++++ + ++ l G +G+GKttla+   ++
  CCE31474.1 283 VEEEKPHRKILMLTGPPGLGKTTLAHVCARQ 313
                 578889999***************9866555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011      0.11       2      22 ..     293     313 ..     292     336 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
                 EEEE--TTSSHHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlel 22 
                 +++TGppG GKtTl +  +++
  CCE31474.1 293 LMLTGPPGLGKTTLAHVCARQ 313
                 589***********9987765 PP

>> BPL_LplA_LipB_2  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00017      0.16     127     169 ..     215     259 ..     209     264 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
  BPL_LplA_LipB_2 127 eseepGetpdetaLeeEGcaeveavall..eslarhllawinrwe 169
                      e++ pG++p++t L+ E     + v+l   +   rh+l w++rw+
       CCE31474.1 215 EAQIPGKKPKKTLLWTEKYRARKFVDLCgdDGTNRHVLRWLKRWD 259
                      45689**********************965689***********7 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00082      0.78      10      61 ..     289     336 ..     281     398 .. 0.74
   2 ?   -0.6   0.0       1.8   1.7e+03      38      80 ..     902     957 ..     896     994 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00082
                 TTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkei 61 
                 + +++ ++G+ G GK+tL+ + a++   +  e++     ++++++ +++++i
  CCE31474.1 289 HRKILMLTGPPGLGKTTLAHVCARQAGYEVLEVNA----SDDRSRDVVNNRI 336
                 567899***************99987665555533....3333344444444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.8
                 SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...............H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............x RF
    ABC_tran  38 teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...............e 80 
                 t G+i++  +++++ + +  +k+ + l q+p+ +++l +r+                 
  CCE31474.1 902 TPGDIQVAPQPFTY-SAPDHEKHRSLLAQQPFQKYKL-ARDAativkkdffgriieaR 957
                 67999999999999.9999999999999999988888.66655665555555555550 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00023      0.22      18      48 ..     287     321 ..     269     324 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00023
                 H..TEEEEEEESTTSSHHHHHHHHHHHTT--..-- CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrglakalgve..ev 48 
                    +++++L+G+ G GKTtl++  a++ g+e  ev
  CCE31474.1 287 KphRKILMLTGPPGLGKTTLAHVCARQAGYEvlEV 321
                 2446789********************99976666 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00038      0.36      97     138 ..     288     329 ..     240     343 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00038
                  CTTSEEEEECSTTSSHHHHHHHHCTT-----S---------- CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpelelktgevseklgrGk 138
                   + k+ +l G+ G GK+tL  + + ++  ++ ev ++++r +
   CCE31474.1 288 PHRKILMLTGPPGLGKTTLAHVCARQAGYEVLEVNASDDRSR 329
                  355999****************************99999876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         2   1.9e+03      29      54 ..     128     153 ..     121     168 .. 0.72
   2 ?    8.1   0.0    0.0018       1.7      32      85 ..     289     339 ..     280     352 .. 0.81
   3 ?   -2.0   0.0       2.3   2.2e+03      22      48 ..     777     803 ..     772     818 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2
       AAA_7  29 llknkkpvllvGptGtGKtviikdll 54 
                 + ++  p+ ++ +t +GK++++++  
  CCE31474.1 128 IAESIAPLSYTATTCSGKSATVQQRK 153
                 556666778889999*******9843 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0018
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesk 85 
                 ++k ++l+Gp G GKt++++ + ++     y +l +n s   s   + + i  +
  CCE31474.1 289 HRKILMLTGPPGLGKTTLAHVCARQAG---YEVLEVNASDDRSRDVVNNRIRTS 339
                 67889*************999888777...888888888777777666666655 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.3
       AAA_7  22 ysyllelllknkkpvllvGptGtGKtv 48 
                 + yl++l+    kpv++ G++G+  +v
  CCE31474.1 777 LPYLMRLVSPDVKPVVIGGSQGSTASV 803
                 6699999**************998776 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       9.5     9e+03      16      37 ..     138     159 ..     132     171 .. 0.78
   2 ?    9.9   0.2   0.00091      0.86       8      31 ..     288     310 ..     280     374 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9.5
      AAA_19  16 taGpGtGKTrvlkhivallvel 37 
                 ta   +GK+ +++++ a +v+ 
  CCE31474.1 138 TATTCSGKSATVQQRKASVVAS 159
                 6777899999999998887765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00091
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhiv 31 
                  ++k+l++t++pG GKT++  h++
  CCE31474.1 288 PHRKILMLTGPPGLGKTTLA-HVC 310
                 578999***********864.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1003 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 6648.95
//
Query:       CCE31475.1  [L=532]
Description: related to NAM9-mitochondrial ribosomal protein,small subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-13   49.7   0.0    6.1e-13   48.3   0.0    1.8  1  S4        S4 domain


Domain annotation for each model (and alignments):
>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   3.4e-17   6.1e-13       1      47 [.     159     205 ..     159     206 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 3.4e-17
                 EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCE CS
          S4   1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDv 47 
                 rRLd+ ++r+++ass r+Arq++ hG V+VNG +   psy++ pgD+
  CCE31475.1 159 RRLDTAIFRALFASSVRQARQFVIHGAVKVNGLKMVHPSYQLNPGDM 205
                 8*******************************98888*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1234  (0.068827); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 4074.03
//
Query:       CCE31476.1  [L=895]
Description: NIT-4 pathway-specific regulatory protein nit-4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-40  139.0   0.0    2.3e-40  138.3   0.0    1.3  1  Fungal_trans  Fungal specific transcription factor domain
      4e-08   33.3   7.2      1e-07   31.9   7.2    1.8  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.0   2.6e-44   2.3e-40       4     266 ..     252     514 ..     249     515 .. 0.94

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 2.6e-44
  Fungal_trans   4 ffsnfh.pqfpilhkpsflpkt.....ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwil 94 
                   +   +h   f++l k+ fl+++     s ++ss++ y+spll++ailalG++f++++ +++++   s +    +f+ +a+ li+ + +   ++l ++
    CCE31476.1 252 YLN-YHlTYFTVLSKNLFLRDFlrgrdSVSSSSSTSYCSPLLVNAILALGCHFTSMAGAFETPGDASTK--GDHFFAEAKRLILGNDEFAIPRLVTV 345
                   444.46699*****************9999*******************************99999865..99************************ PP

  Fungal_trans  95 qsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlp....LPc 187
                   q+L l+++ e ++++ a+ + ++g+ +r+a+++gL+ +     +    + + ee  +r+ ++w++F++Dk+++ +lGr p l + + n++    +P+
    CCE31476.1 346 QALGLMSVREAGCGREAQGWVYSGMSFRMAQDMGLNLEVTGTDR---EHMSDEEVDARKITYWGCFVFDKCWSNYLGRLPQLQKASCNISrfdaCPE 439
                   ************************************99988775...5677777**************************66666666668****** PP

  Fungal_trans 188 ddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnWr 266
                   +d  +w+ +++++++      + +++ r+ a++l +L++i s+++  ++ +++  + r ++   l+++ e++r+l++Wr
    CCE31476.1 440 EDAAMWSPLTDTGFDASF---KRPSQTRSAALQLASLCEISSDLLVFFYHPNHIGRSRGKS-VELKKLSEIHRRLEQWR 514
                   ****************99...89**************************************.****************9 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   7.2   1.1e-11     1e-07       1      37 [.      58      94 ..      58      98 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 1.1e-11
                SS-HHHHHCT---STSSSS-HHHHHCT.HHHCCCCTCC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkkln.leCtfysess 37
                +aC  Crk+K+KCd+  P+C+ C+++  +eC  y+  s
  CCE31476.1 58 TACVACRKRKSKCDGALPTCAACASVYgTECA-YDPDS 94
                69**********************9766***9.76554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (895 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 5879.83
//
Query:       CCE31477.1  [L=31]
Description: uncharacterized protein CPUR_05330 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        85  (0.00474092); expected 358.6 (0.02)
Passed bias filter:                       59  (0.00329076); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 263.38
//
Query:       CCE31478.1  [L=20]
Description: uncharacterized protein CPUR_05331 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (20 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        90  (0.0050198); expected 358.6 (0.02)
Passed bias filter:                       35  (0.00195214); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 157.83
//
Query:       CCE31479.1  [L=852]
Description: related to transcription activator [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-28   97.8   0.0    5.1e-27   94.6   0.0    2.1  2  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   2.8e-31   5.1e-27      30     248 ..     294     604 ..     283     630 .. 0.83
   2 ?    0.3   0.0     0.016   2.8e+02     125     186 ..     658     723 ..     653     730 .. 0.85

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 2.8e-31
  Fungal_trans  30 sksayaspllllailalGalfsesetkesnssltsesqefiafpl.............................raeili................. 80 
                   +  ++++p+ll+++l+++a+ se +  ++ +s++s    +i++ l                             +                      
    CCE31479.1 294 TRPRKCQPALLASMLWVAAQTSEAPLLTNVPSARS----KICQKLleltisllkplihsssappstnsdnsptsA----Gtamtplgavlpgsvgsf 382
                   46789***********************9999998....566666455555554444444455555555555550....044455555555555555 PP

  Fungal_trans  81 ......hedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkks.....................lwklweeeae 150
                          +d +  +s+l  l ++ +l+++ ++s+++ +  r+++va++lar+l+L+r+ + ++  s                       +++eee+e
    CCE31479.1 383 daalsgQTDTFRAASQLDDLVTYIHLATVVSASEYKGSSLRWWNVAWSLARELKLGRELPPSEARSgfdqremdsdgldehdrtrntPGVVTEEERE 479
                   5555675666666666*********************************************99888********************977888888** PP

  Fungal_trans 151 srrRlwwaaFylDktialklGrpp.llddsqinlpLPcddddlwesddaseetlvetk..........................lsneeksrkiasf 220
                   +rrR+ww ++++D+++al+++rp  lld ++  l+ P dd+ +++ d++    + +                            ++ e  + +i+ f
    CCE31479.1 480 ERRRVWWLVYIVDRHLALCYNRPLfLLDVECEGLRQPLDDSAWQNGDFRPRAADSGGHtvnpgnsdmmsmlsegedsarpssseNQFEFRGYSIYGF 576
                   ************************99***************8888888888888876699************************************* PP

  Fungal_trans 221 llaLkkilskiagsllsiekqlqqrdlq 248
                   +l L+ il++i++ +++++++   + ++
    CCE31479.1 577 FLPLMMILGEIVDLHHARNHPRFGSAFR 604
                   *************999999988777766 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.016
  Fungal_trans 125 rslgLhrnpsyvgkks.lwklweeeaesrrRlwwaaFylDktialklGrpp...llddsqinlpLP 186
                   r +  +r ps  + ++ + + +e+e +sr  l++++ ++ +++ l  Gr+    lldd+++ l+ P
    CCE31479.1 658 RAMESNRSPSAHSVHTsSSRITEAEVQSRTMLAYGTHVMHVLHILLEGRWDpvsLLDDEEMWLASP 723
                   66777888887776667899999**************************98788899999977766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 6239.58
//
Query:       CCE31480.1  [L=134]
Description: uncharacterized protein CPUR_05332 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       184  (0.0102627); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 996.32
//
Query:       CCE31481.1  [L=386]
Description: uncharacterized protein CPUR_05334 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.046   12.4   3.7      0.071   11.7   3.7    1.2  1  THOC2_N   THO complex subunit 2 N-terminus
      0.072   13.4   1.1       0.22   11.8   0.0    2.2  3  PMEI      Plant invertase/pectin methylesterase inhibitor


Domain annotation for each model (and alignments):
>> THOC2_N  THO complex subunit 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.7   7.9e-06     0.071     328     473 ..     141     287 ..     109     296 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.9e-06
     THOC2_N 328 naLamagaLsdddDtepkkekeakkkekakkkeeeekeeepepeklkdqkiqLlkaLLaiGalpeslfiLgryPwlae.vdpeipelihRilehslepl 425
                 ++ a a+ L+  +  +++ ++e+ + + ++++e+++ +++ ++e+l++   qL+++ L i  l++ l  Lg  P   + ++p+i + +h  +    +  
  CCE31481.1 141 APDASAAELEAAEKINNAIAQESLRIDRERNNEAAKRSRRLKNENLDNANQQLIQNALQIAWLEAQLSALGGCPEAFDsISPNIKKRLHDKIIDRRDRY 239
                 5556677777666555533333333333444444444444445557789************************987652667999999988888889** PP

     THOC2_N 426 yesvravplsseekvaedqsglpkgskvkltespkkrllrwpktdkpl 473
                 ye+ r+ + + e++  ++q+  + ++k +l+e+++++ +r  k dk++
  CCE31481.1 240 YERRRKEKGKRETRKRSEQNRRRAAQKRELNERTIRQCIRADKSDKSA 287
                 ***9977666666444489999999999999999***********965 PP

>> PMEI  Plant invertase/pectin methylesterase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.2   1.1e+04     104     133 ..      12      37 ..       9      55 .. 0.61
   2 ?   11.8   0.0   2.5e-05      0.22      33     135 ..     132     230 ..     110     243 .. 0.64
   3 ?   -0.8   0.2       0.2   1.8e+03      17      53 ..     278     313 ..     260     324 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHHHHTTSS--..... CS
        PMEI 104 aqtwlsaaltdqdtCedgfkeakkalkkkv 133
                 +q + s a  ++ +C  +f +     + +v
  CCE31481.1  12 MQGMYSPAQNNAISCGLSFPNI----SPPV 37 
                 5666777888999998888443....3333 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.5e-05
                 ....HHHHHHHHHHHHHHHHHHHHHHHHHHHS.......-HH.HHHHHHHHHHHHHHHHHHHHHHHHH-HH....HH..HHHHHHHHHHHHHHHHHHTT CS
        PMEI  33 g...dLakaalkvalanarsaaaaiskllkkskkk.klkkkk.aaledClelyedavdeLedalaalkrskrkvdda..qtwlsaaltdqdtCedgfke 124
                 +   d +k+a ++++a++++a +  +++ ++++ + + ++ + +a +  + l ++ +d+ ++ l         +++a   +wl a l++   C ++f++
  CCE31481.1 132 KvfpDYVKLAPDASAAELEAAEKINNAI-AQESLRiDRER-NnEAAKRSRRLKNENLDNANQQL---------IQNAlqIAWLEAQLSALGGCPEAFDS 219
                 1556678899999999999775555555.33333313333.24888888877777777666442.........33444489****************87 PP

                 SS--.....HH CS
        PMEI 125 akkalkkkvks 135
                  ++++kk++++
  CCE31481.1 220 ISPNIKKRLHD 230
                 76666666655 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.2
                 HHHH..HHH..CHCH....HHHHHHHHHHHHHHHHHHHH CS
        PMEI  17 vssLssdpesasasaag..dLakaalkvalanarsaaaa 53 
                 +++ +sd   +sa  ++  +L ++ l   +a a+saaa 
  CCE31481.1 278 IRADKSD---KSAMRQRhvKLFQVGLATDAAAAASAAAV 313
                 3333344...33332233445555554444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1651  (0.0920854); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2787.10
//
Query:       CCE31482.1  [L=477]
Description: related to guanine deaminase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-70  235.9   0.0    9.8e-70  235.6   0.0    1.0  1  Amidohydro_1  Amidohydrolase family
    2.8e-07   30.4   0.2    7.2e-07   29.0   0.1    1.5  1  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.6   0.0   1.1e-73   9.8e-70       8     344 .]      85     473 ..      84     473 .. 0.94

  Alignments for each domain:
  == domain 1  score: 235.6 bits;  conditional E-value: 1.1e-73
                   EEEEECETTECSSS....GHHHHH...........STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEESSEGGS. CS
  Amidohydro_1   8 DaHvHleqsllrga....tledwl...........vppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilggkvsldr. 88 
                   D+HvH++q++++g+    tl+dwl            +   a+ ++  +i+++l +Gttt+a++ +++++++++l++ + +l  g+r+++g+v++dr 
    CCE31482.1  85 DTHVHASQYPNVGIfgtsTLLDWLdkytfplesslSDLAKARKVYTACIRRTLAHGTTTAAYYATVDVPATNLLADLCLSL--GQRAFVGRVCMDRe 179
                   9*******************************************************************************8..************** PP

                   .........GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTT CS
  Amidohydro_1  89 .........gsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthl 176
                            +s+e s   ++  ++ + + i ++++ +v+++l+p++apa+s+ +++ ++k+  +r lpv++H++e+k e+e +++ ++    +g++ 
    CCE31482.1 180 alcpdyyrdESHEASVQATKDTITHM-DEI-DPERRLVSPILTPRFAPACSEGAMDGLAKLQQQRSLPVQTHISENKPEIELVKNMYP---DSGSYA 271
                   ******66644444444444444443.333.46677777*************************************************...****** PP

                   TSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCT CS
  Amidohydro_1 177 evaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalklqrglly 273
                    v++  gll++ k++lah vhlt  ea l+ +r  e++++hcp+sns+l+sg +++r+++d+G+ vglgtD  + g s+++le  r+a++++r+l++
    CCE31482.1 272 AVYDRCGLLTP-KTVLAHAVHLTEQEASLISQR--ETKISHCPCSNSSLSSGDARVRWMWDKGIEVGLGTD-MSGGYSPSVLEAARQATLTSRHLAM 364
                   ***********.*********************..************************************.************************* PP

                   T......TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC.CT...............................CGGGTTTCTSE CS
  Amidohydro_1 274 e......deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl.di...............................laafvglkkdg 332
                   +      +e+++l+++e+l++aT +gA++lgl d+vG +evGk+ D+ ++ l +                                +a++ ++ +d+
    CCE31482.1 365 QledeesREKCKLTVEEVLYLATRGGAICLGLGDTVGGFEVGKQLDAQLIRLaTVgddgfrcgedsregidagnvdifgwesweekIAKWLYNGDDR 461
                   999999999*****************************************997336667888889999***************************** PP

                   EEEEEEETTEEE CS
  Amidohydro_1 333 nvkkvivkGklv 344
                   n+kkv+v+G+lv
    CCE31482.1 462 NTKKVWVRGRLV 473
                   *********997 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1     8e-11   7.2e-07     358     472 ..     322     473 ..     311     474 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 8e-11
  Amidohydro_3 358 tpvkellnagvkvalgsD.apvgpfdpwpri.gaavmrktrrgg...evlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvld... 446
                   ++v++++++g+ v lg+D + + ++  +    +a+++++  +++   e  r++ +l++ee+l l Trg+A  lgl d+ G+ evG++ D  +++   
    CCE31482.1 322 ARVRWMWDKGIEVGLGTDmSGGYSPSVLEAArQATLTSRHLAMQledEESREKCKLTVEEVLYLATRGGAICLGLGDTVGGFEVGKQLDAQLIRlat 418
                   689***************54444444444332577888888888******************************************76655555559 PP

  Amidohydro_3 447 ..adpldvdppelaear...........................vrltvvdGrvv 472
                     +d +++ ++ +  +                             ++++v+Gr v
    CCE31482.1 419 vgDDGFRCGEDSREGIDagnvdifgwesweekiakwlyngddrnTKKVWVRGRLV 473
                   9999999998877776688888888888888888888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3510.87
//
Query:       CCE31483.1  [L=2102]
Description: probable fatty-acyl-CoA synthase, beta subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-158  527.0   0.0   4.3e-158  525.8   0.0    1.7  1  DUF1729          Domain of unknown function (DUF1729)
    3.9e-88  296.0   0.0      3e-86  289.8   0.0    3.0  4  Acyl_transf_1    Acyl transferase domain
    9.8e-54  181.1   0.0    3.2e-53  179.5   0.0    1.9  1  FAS_meander      Fatty acid synthase meander beta sheet domai
    2.6e-38  130.4   0.0    5.8e-38  129.2   0.0    1.6  1  MaoC_dehydratas  MaoC like domain
    3.3e-37  127.4   0.0    1.4e-36  125.3   0.0    2.1  2  FAS_N            N-terminal domain in fatty acid synthase sub
    1.5e-35  123.1   0.0    5.8e-35  121.2   0.0    1.9  2  SAT              Starter unit:ACP transacylase in aflatoxin b
    8.3e-24   84.2   0.0    2.1e-23   82.9   0.0    1.7  1  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.32   11.0   0.0    1.6  1  DUF1830          Domain of unknown function (DUF1830)


Domain annotation for each model (and alignments):
>> DUF1729  Domain of unknown function (DUF1729)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  525.8   0.0  1.9e-161  4.3e-158       1     353 []     739    1088 ..     739    1088 .. 0.99

  Alignments for each domain:
  == domain 1  score: 525.8 bits;  conditional E-value: 1.9e-161
     DUF1729    1 piilqwtggraGGHHSledleaplletYakiRkqkNvvlvvGsGlgdaedsieyltGeWskelglppmPvdgillgsavmvakEaktseevkqlive 97  
                  p++lqwtggr+GGHHS+ed+++p+l++Y++iR+q+N++lv+GsG+g aed+++y+tGeWsk++g+ppmP+dg l+gs++mvakEakts++vkq+i++
  CCE31483.1  739 PVLLQWTGGRGGGHHSFEDFHQPVLQMYGRIRRQENIILVAGSGFGGAEDTYPYITGEWSKKYGYPPMPFDGCLFGSRMMVAKEAKTSKAVKQAIID 835 
                  699********************************************************************************************** PP

     DUF1729   98 tpGvkdeeWeatykkpaGgvvsvrSelgepihkianraaklwkeldetifsleavekrkaalekkrdeiierlnkdyakpwfavdeegelveleemt 194 
                  +pG++d+eWe+tyk paGgv++vrSe+gepihk+a+r++++w e+d++ifsl ++ekr+a+l+k+r++ii+rln d++k+wf+++++g+ v+le+mt
  CCE31483.1  836 APGLDDSEWEQTYKGPAGGVITVRSEMGEPIHKLATRGVRFWAEMDQKIFSL-PKEKRVAELKKNREYIIKRLNDDFQKVWFGCNKDGKAVDLEDMT 931 
                  ****************************************************.******************************************** PP

     DUF1729  195 YsevvrRlveLaflksrkewidpswkklfqdllqrveeRltaeehgeaesllesvealedPaeavetllaaypsaeaqlltaeDvawflqlvqrrgi 291 
                  Y+evvrRlveL+++k++++wid ++  l+ d+++rveeR+t++    + sll+++++l++P +av+ +l  yp+ae+q ++a+Dv++fl l+ r+++
  CCE31483.1  932 YAEVVRRLVELLYVKHQQRWIDRTYITLTGDFIHRVEERFTST--PGKPSLLQNYSDLDEPFAAVDRILSHYPEAETQIINAQDVQHFLLLCLRPVQ 1026
                  ****************************************554..57899*********************************************** PP

     DUF1729  292 KPvpFvPvldedfeaffkkdslwqsedldavvdqdaqrviilqgpvavryitkvdepvkeil 353 
                  KPv F+P ld++fe+ffkkdslwqsedldav++qd+ r +ilqgp+av++++ vdep+keil
  CCE31483.1 1027 KPVTFIPSLDNNFEFFFKKDSLWQSEDLDAVIGQDVGRCCILQGPAAVKFSNVVDEPIKEIL 1088
                  ************************************************************98 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.047   1.1e+02      41     112 ..     224     306 ..     205     326 .. 0.69
   2 ?   -2.4   0.0       1.2   2.6e+03     146     176 ..     377     407 ..     366     412 .. 0.84
   3 ?   -3.7   0.0       2.9   6.6e+03     147     178 ..    1597    1629 ..    1593    1636 .. 0.77
   4 !  289.8   0.0   1.3e-89     3e-86       2     317 ..    1694    2064 ..    1693    2065 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.047
                    T--HHHHHHS--T....TGGGSHHHHHHHHHHHHHHHHHHH.HHTT.......-TTSEEEE-TTHHHHHHHHCCSSSHHHHHHH CS
  Acyl_transf_1  41 gfsvldvlrnnpe....glldaiqfvqpaLaavqialaell.kskG.......vrpaavvGHSlGElAaavvagalsseealla 112
                    g+ v++ l+ ++       l +  +++p + +vq+a +e+  k  G        r ++  GHS+G + aa+ a+   s e+ ++
     CCE31483.1 224 GLDVMNWLQHAEStpdiDYLISAPVSFPLIGLVQMAHYEVTcKVLGihpgmlrERIGGTTGHSQGIVMAAATAA-ADSWESWRE 306
                    666666666655555555666777889999999999999987888944334333334579*****887765544.455666665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                    T.EEEEEEECCCCECCEEHHHHHHHHHHHHH CS
  Acyl_transf_1 146 dvvgavansprrvvisgsqealrelvervsk 176
                    +++ +  nspr+ v++g++ +l  l  +++k
     CCE31483.1 377 HISISLINSPRNLVVTGPPTSLYGLNSQLRK 407
                    5778899************999888777776 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.9
                     .EEEEEEECCCCECC.EEHHHHHHHHHHHHHCC CS
  Acyl_transf_1  147 vvgavansprrvvis.gsqealrelvervskeg 178 
                     v    an p++++ +  s++a+r lve +++e+
     CCE31483.1 1597 VFSTYANLPGTITHGmYSSAAVRSLVETWAAEN 1629
                     666778888888875368999*********998 PP

  == domain 4  score: 289.8 bits;  conditional E-value: 1.3e-89
                     EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--T.......................................... CS
  Acyl_transf_1    2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpe.......................................... 53  
                     +vf+GqGsQ++GMGmeL+++s ++++v++rad+ + ++ygfs++++++nnp+                                          
     CCE31483.1 1694 YVFTGQGSQEQGMGMELYASSSVAKEVWDRADKYLLDNYGFSITNIVKNNPKeltihfggprgkairqnymamtfetvatdgtikserifkeis 1787
                     9********************************************************************************************* PP

                     ............TGGGSHHHHHHHHHHHHHHHHHHHHHTT..-TTSEEEE-TTHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEEC CS
  Acyl_transf_1   54 ............glldaiqfvqpaLaavqialaellkskG..vrpaavvGHSlGElAaavvagalsseeallavvlrsrlmmqlagpgdmaave 133 
                                 gll+a+qf+qpaL+++++a +e++kskG  +r+ +++GHSlGE++a++++++++++e+l++vv++++l+mq+a+++d+a+++
     CCE31483.1 1788 esttsytyrsptGLLSATQFTQPALTLMEKASFEDMKSKGlvPRDSTFAGHSLGEYSALAALADVMPIESLVSVVFYRGLTMQVAVERDAAGRS 1881
                     *****************************************99*************************************************** PP

                     S.HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHH CS
  Acyl_transf_1  134 laeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvgalvenvnvavhspqvdaiadalasaladiaprkpkvakisstsldes 227 
                     +             + ++a +p+r+  ++++eal+ +v  +s+e+ g+l e+vn+++ + q+++++d +a++++  + ++ k ++i++ +++++
     CCE31483.1 1882 N-------------YSMCAVNPSRISKTFNEEALQFVVDSISEET-GWLLEIVNYNIANMQYVCAGDLRALDTLAGVTNFLKKQQIDIEEMRSN 1961
                     *.............*******************************.*****************************999***************9 PP

                     ...HHHCHHHHHHHHHHHCHCCHCCHHTTS.SSECC-CCEECSSSSCCHCCCCCCCHH.......GGG-TCCCCCCTEETTSS-..HHHCHHHH CS
  Acyl_transf_1  228 ...serelsaeywvanlrspvrfaeavlsa.aetiplvfveispHslllaalektlks.......aedvksatlvGklkrdltd..flvtflyl 308 
                         ++ l +++         ++ +++l++ ++tipl ++++++Hs+ l+ ++k+++s       +  + + +lvGk+++++t+  f  t++y+
     CCE31483.1 1962 ieeAKEALREIIRGCADATLKKPVPLELERgFATIPLRGIDVPFHSTFLRSGVKPFRSfllkkinKTTIDPSKLVGKYIPNVTAkpFELTKEYF 2055
                     996566677777666666666778999******************************************************************* PP

                     HHHHHHCT- CS
  Acyl_transf_1  309 lakahltgs 317 
                      ++++lt s
     CCE31483.1 2056 EEVYKLTNS 2064
                     *****9976 PP

>> FAS_meander  Fatty acid synthase meander beta sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.5   0.0   1.4e-56   3.2e-53       2     146 .]    1152    1296 ..    1151    1296 .. 0.99

  Alignments for each domain:
  == domain 1  score: 179.5 bits;  conditional E-value: 1.4e-56
  FAS_meander    2 selpseeewlellageelsWlralltsetivqgkklveNPlrrllaprkgqlveieeadspektvvtvkeakesgelkkaveiklsedkeIsvtli 97  
                   s+lps e+wl llag++++W++all+s+++vqg+k+++NP+rr++ap++g  vei  +++p+kt+++vke+ ++++++ ++e+kl +++eI v++i
   CCE31483.1 1152 SALPSVESWLTLLAGPKRNWRHALLMSDVVVQGQKFQTNPMRRIFAPARGLFVEILYPEDPTKTSIVVKEQPRHNHYVDVIEVKLVGKNEILVNMI 1247
                   79********************************************************************************************** PP

  FAS_meander   98 eertaegesvpLeleFeYkpetglapIhEvmegrndrikeFYwklWfge 146 
                   ++ ta g++v+L+l+F Y+pe+g+apI+Evme+rndrikeFYwk Wfg+
   CCE31483.1 1248 KDTTALGKPVALPLKFIYHPEAGYAPIREVMEDRNDRIKEFYWKAWFGN 1296
                   ***********************************************96 PP

>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.0   2.6e-41   5.8e-38       3     122 ..    1550    1678 ..    1548    1679 .. 0.97

  Alignments for each domain:
  == domain 1  score: 129.2 bits;  conditional E-value: 2.6e-41
                       CCCTTSEEEEEEEEEEE.........HHHHHHHHHHHT---GGGT-HHHHHHTTTSSSB--HHHHHHHHHHHHHHHHSTTEGGGEEEEEEEE CS
  MaoC_dehydratas    3 qnaigekvetekeitvt.........eadialyalvsgDlnpiHvdpefAkkagfggpIahGmltlaivaklveeelgdnvvarvgeikvrF 85  
                       ++a+++++ +e++i+++         +a++++ya+vsgD+npiHv++ f+ +a+++g+I+hGm+++a+v++lve+++++n + rv+++++ F
       CCE31483.1 1550 GSALDQPILFENPIPLSgkkplqlraPASNETYARVSGDYNPIHVSRVFSTYANLPGTITHGMYSSAAVRSLVETWAAENDIGRVRSFHATF 1641
                       67899*************************************************************************************** PP

                       -S--BTTCEEEEEEEEEEEEEEEEEEEEEEEEEEEEE CS
  MaoC_dehydratas   86 tkpVlpgdtlkvelevvgkrdvrktkkvevtkevtee 122 
                       +++Vlp+d+++v+l++vg+ ++rk++kvev++++tee
       CCE31483.1 1642 AGMVLPNDDIQVKLQHVGMVAGRKIIKVEVSNTETEE 1678
                       *********************************9986 PP

>> FAS_N  N-terminal domain in fatty acid synthase subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.3   0.0   6.4e-40   1.4e-36       1     126 [.      20     144 ..      20     146 .. 0.94
   2 ?   -2.2   0.0       1.7   3.8e+03      27      69 ..     905     950 ..     900    1000 .. 0.71

  Alignments for each domain:
  == domain 1  score: 125.3 bits;  conditional E-value: 6.4e-40
       FAS_N   1 slrplslthgslevsilvpaslylaaeqLrdeFtatlvapseeleqeeeplseieLlakFLgyvaksie.stesstsqfedvlklvleefessyLkknd 98 
                 slrpl+lthg+le s+l p++l+++a q++d F a+l+a ++el+q++ep+s+ eL+a+++g+va+++e  ++++++++e+vlklvl+efe+++L++n+
  CCE31483.1  20 SLRPLTLTHGTLETSFLFPSNLHFHASQIKDRFVASLPAATDELAQDDEPSSVAELVARYMGFVAQEVEeGEDDASGSYEEVLKLVLNEFERAFLRGNE 118
                 89*******************************************************************65669************************* PP

       FAS_N  99 ihalvsnLpsettllakk.eviraYykal 126
                  hal+  Lp   ++ +kk evir+Yy a+
  CCE31483.1 119 AHALAATLP---GIESKKlEVIRCYYMAR 144
                 *********...45555526******986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
       FAS_N  27 eqLrdeFta.tlvapseeleqeeeplseieLlakF..Lgyvaksie 69 
                 ++L+d+F++     ++++ + + e+++  e + +   L yv++++ 
  CCE31483.1 905 KRLNDDFQKvWFGCNKDGKAVDLEDMTYAEVVRRLveLLYVKHQQR 950
                 6788888883344555778888888888888877634456666544 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.0   2.6e-38   5.8e-35       2     238 ..     172     424 ..     171     425 .. 0.89
   2 ?   -1.5   0.0      0.78   1.7e+03      92     130 ..    1820    1859 ..    1799    1915 .. 0.68

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 2.6e-38
         SAT   2 lFGDq.tad.vlpeLrkLlqakenplLrsFLekasealraeisrlpaaerkslp...rf.tslqellerysesglkspalssallciaqlaqfivy... 91 
                 +FG+q + + +++eLr+++  ++++++ +++++++e lr+   +   + +k++p   ++ ++lq+ +++++ ++l s+++s++l++++q+a++ v+   
  CCE31483.1 172 IFGGQgNIEeYFDELREVF-TTYSSFVGELITSSAELLRTLSTTS--SAEKMFPkglDVmNWLQHAESTPDIDYLISAPVSFPLIGLVQMAHYEVTckv 267
                 8****97777*********.*******************998875..4566677778555*********************************999665 PP

         SAT  92 leenpeeypspestylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevar...........vaarleegsssssesWslavtglseeelek 179
                 l+ +p  + +    + +G+++G++ Aaa a+++s+++  ++ + ++ ++f++G ++++            ++++e  + + + +++l++++ls++e++k
  CCE31483.1 268 LGIHPGMLRE-RIGGTTGHSQGIVMAAATAAADSWESWREITRSTLSILFWVGTRSQQafpttsmtptmLRESME--HGEGNPTPMLSIRDLSQQEVQK 363
                 5555555544.4679*********************************************999997776666666..4444566*************** PP

         SAT 180 alaefneekglppasrvyisavssss.vtisGpPstl...eallksskakkkkkksklpiyap 238
                 +++++n++ +  p++++ is+++s++ ++++GpP++l   ++ l++ ka + ++++++p +++
  CCE31483.1 364 HIDATNQYLP--PHRHISISLINSPRnLVVTGPPTSLyglNSQLRKVKAPTGLDQTRIPYTER 424
                 ********99..9***********999********************************8865 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.78
         SAT   92 leenpeeypspestylvGlCtGllaAaav.acskslseLv 130 
                  +e+ ++++  p ++  +G++ G  +A a+ a    +++Lv
  CCE31483.1 1820 FEDMKSKGLVPRDSTFAGHSLGEYSALAAlADVMPIESLV 1859
                  4566666677779999999999999866525555555554 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   9.2e-27   2.1e-23       2     131 ..    1304    1429 ..    1303    1430 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 9.2e-27
  MaoC_dehydrat_N    2 liGaefepvkaevereavrefakavgetnpayldeeaaraagyrsliaPptflivlatkap..ell.ealgidlsrllhgeqefey...hep 87  
                       li+  f++ +a+++ ea+++f++avg+t +a++d+  +       ++aP++f+iv+++ka    ++ +++++dl +l+h++++f++   ++p
       CCE31483.1 1304 LITGTFDGGRATITSEAINDFVHAVGNTGEAFVDRPGK------VVNAPMDFAIVVGWKAItkPIFpRTIDGDLLKLVHLSNQFRMipgADP 1389
                       6777899******************************8......9*************886664556999****************99999* PP

  MaoC_dehydrat_N   88 iraGDelttesriadvydkkgvGalefivvettvtnqrGepvat 131 
                       +++GDe+ t++++++v ++   +a+++++v+ t++ ++G pv++
       CCE31483.1 1390 LKKGDEVCTTAQVNAVINQ---EAGKMVEVCGTIS-RDGTPVME 1429
                       ******************9...69***********.******98 PP

>> DUF1830  Domain of unknown function (DUF1830)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00014      0.32       7      46 ..     131     170 ..     130     177 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
     DUF1830   7 tskiqilRitnipnwyfErvvfPgerllFeAppeaeLEIh 46 
                 ++k++++R+  +++    rv+ P+e  lF A  e    I+
  CCE31483.1 131 SKKLEVIRCYYMARDVSGRVIKPHESALFRAADEESAKIY 170
                 789****************************999887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.12u 0.28s 00:00:01.40 Elapsed: 00:00:00.48
# Mc/sec: 13142.55
//
Query:       CCE31484.1  [L=1865]
Description: probable fatty acid synthase, alpha subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-79  264.3   0.2    2.3e-78  262.5   0.0    2.1  2  FAS_I_H          Fatty acid synthase type I helical domain
    3.6e-76  255.0   0.0    7.9e-76  253.9   0.0    1.6  1  Fas_alpha_ACP    Fatty acid synthase subunit alpha Acyl carri
    5.7e-22   78.5   0.0    1.5e-21   77.1   0.0    1.7  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    2.9e-19   69.3   0.0    7.5e-19   68.0   0.0    1.8  1  ACPS             4'-phosphopantetheinyl transferase superfami
    1.4e-11   44.5   0.1    5.3e-11   42.6   0.0    2.0  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    6.5e-05   22.9   0.0    0.00024   21.0   0.0    2.0  1  KR               KR domain
  ------ inclusion threshold ------
      0.011   16.4   0.1       0.06   14.0   0.0    2.4  2  Methyltransf_25  Methyltransferase domain
      0.097   12.2   0.0       0.24   11.0   0.0    1.6  1  PnpCD_PnpD_N     Hydroquinone 1,2-dioxygenase large subunit N


Domain annotation for each model (and alignments):
>> FAS_I_H  Fatty acid synthase type I helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.5   5.6e+03     123     153 ..      56      86 ..      49      89 .. 0.80
   2 !  262.5   0.0     1e-81   2.3e-78       1     202 [.     331     532 ..     331     533 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.5
     FAS_I_H 123 llkkakassgekyaaakelgekllknarsal 153
                 ++k + as+ e y+aak + +++l++ ++a 
  CCE31484.1  56 MAKRTLASKYEAYDAAKSVQRQILCYNKDAK 86 
                 55666678999************99988765 PP

  == domain 2  score: 262.5 bits;  conditional E-value: 1e-81
     FAS_I_H   1 tkkqnelvrqqlevlaryLgvdseasereaaessaevaelqaeLdlweaEhgdeylkgikpiFdakKaRrydSaWNwarqdilklyydllqgrlkdvdr 99 
                 tk+q++l++qqle++aryL++d ++++++a +s++  + lqa+Ldlw+aEhgd y++gi+p+F+++KaR+ydS+WNwarqd+l++y+d+++grlk vdr
  CCE31484.1 331 TKDQRALFKQQLELFARYLKMDLRSGDKAAIDSQKSEKVLQAQLDLWTAEHGDFYAAGIEPVFSPLKARTYDSSWNWARQDALNMYFDIIFGRLKAVDR 429
                 689************************************************************************************************ PP

     FAS_I_H 100 eiksrlqrilnRadenlvdlvqyllkkakassgekyaaakelgekllknarsalsaapvyvelseptaPrttidekGnieYeEvpragvqeledyveel 198
                 ei s++ +i+nR++++l+d++qy+++++++++ge+y++akelge+l++n+++ l+ ap y++++ pt+Prtt+d++Gn++YeEvpra+ ++le+yv+++
  CCE31484.1 430 EIVSQCIHIMNRSNPKLLDFMQYHIDNCPTERGETYKLAKELGEQLIENCKEVLDVAPHYKDVAVPTGPRTTVDARGNLNYEEVPRASCRKLEHYVQQM 528
                 *************************************************************************************************** PP

     FAS_I_H 199 ksGs 202
                 ++G+
  CCE31484.1 529 AEGG 532
                 **97 PP

>> Fas_alpha_ACP  Fatty acid synthase subunit alpha Acyl carrier domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.9   0.0   3.5e-79   7.9e-76       1     162 []     143     304 ..     143     304 .. 0.99

  Alignments for each domain:
  == domain 1  score: 253.9 bits;  conditional E-value: 3.5e-79
  Fas_alpha_ACP   1 eDepvkavdivraivaqklkkkldevplsksikdlvgGkStlqNEilgdLqaEfgslpekaedlpleelaealqesfsGklGkqssslisrlvssk 96 
                    +D+pv+a divra++aqklkk+l evplsk+ikdlvgGkStlqNEilgdL++Efgs+pek+ed+pl+el++a+q++f+G+lGkqs+sl++rl+ssk
     CCE31484.1 143 PDQPVQALDIVRALIAQKLKKPLLEVPLSKAIKDLVGGKSTLQNEILGDLGKEFGSTPEKPEDTPLDELGAAMQATFDGNLGKQSQSLVARLISSK 238
                    7*********************************************************************************************** PP

  Fas_alpha_ACP  97 mpggfnlaairkyLekrwglgpgrqdsvlllavtsePakRlgseaeAkafldsvvqkyakkagisL 162
                    mpggfn++a+rkyLe+rwglgpgrqd++llla+t+ePa+Rlgse++Akafld+v+qkya++ag+sL
     CCE31484.1 239 MPGGFNITAARKYLESRWGLGPGRQDGALLLALTMEPAARLGSESDAKAFLDDVTQKYASNAGVSL 304
                    ***************************************************************997 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   6.8e-25   1.5e-21      41     251 ..    1149    1366 ..    1136    1368 .. 0.80

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 6.8e-25
                     SCGTTSBTSSTTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHHHHHHHHTS-HHTC.....TTGGEEEEEEESSTHHHHH CS
  ketoacyl-synt   41 wdadklydpparaagkiktklggfldvddfdpeffgispreaeamdpqqrllleaawealedagltpeel.....dgsrvgvfiGvgagdyaal 129 
                     w +++l   ++ +ag+i+t          +d++ +g++++   ++dp++ +ll+ ++eal +ag+t+        + s+vg+++G+g+g     
     CCE31484.1 1149 WIPKAL-RFDRLVAGQIPT---------GWDAKRYGVPEDIISQVDPVTLYLLVSTAEALLSAGITDPYEfykyvHVSEVGNCVGSGMGGS--- 1229
                     555555.367788888888.........79***********************************77666577655555**********55... PP

                     HHHHHHTT....GGGSCTTHHHHHSTTHHHHHHHHH.HT--SSEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTT CS
  ketoacyl-synt  130 aaldedgs....evkaspkavgavlanviagrisya.lglrGpsvtvdtACsSslvavhaavqslrsgeadvalaGGvellltpeavagfsaag 218 
                     +al+  ++    ++    ++++    n++a+ +++      Gp  t++ AC+++   v++ ++ +++g+a v+++GG + ++++e+ + f++++
     CCE31484.1 1230 VALRGMHRdrylDQPLQNDILQESFINTMAAWVNMLlISSSGPIKTPVGACATAVESVDVGYETIMEGKARVCFVGGFD-DFGEEGSYEFANMK 1322
                     33333333222222222234444899*********97899***************************************.99************ PP

                     BB-TT.SG.......GGTTBTTB...-SB-BB-EEEEEEEEECH CS
  ketoacyl-synt  219 llspd.gr.......ckafdpka...dGfvlGEGvGavvLkrle 251 
                     ++s++ +         + ++p     +Gf+ ++G+G+ v+++++
     CCE31484.1 1323 ATSNTlDEfshgrtpKEMSRPTTttrNGFMESQGCGIQVIMTAK 1366
                     99999833444556655666655777***********9998775 PP

>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   3.3e-22   7.5e-19       2     107 ..    1748    1854 ..    1747    1863 .. 0.87

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 3.3e-22
                  EEEEEEEHHHHH.HHH-----HHHHHS-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTS-S.SSS--GGG-EEEE-TTS-EEEE-S-SSEEEE CS
        ACPS    2 vGiDieklsrlrkrvkrrgakilkrifteeErkllkssdeearaelfarlWaaKEAllKalgpgl.rklldfksievledstgrptlellseakkka 97  
                  vG+D+e++s+++     +++ +l+r ft++E++++k++++++    fa++W+aKEA++K+lg +  +    +k+ie++ ++tg+p ++l++ea++ a
  CCE31484.1 1748 VGVDVEDISAVN-I---NNETFLERNFTADEIAYCKAAPSPQS--SFAGRWSAKEAVFKSLGVASqGAGAAMKDIEIIKNDTGAPAVKLHGEAASAA 1838
                  9*****888888.4...8899*********************9..****************999844499*************************99 PP

                  EEEE-..........S CS
        ACPS   98 wkleslkid......k 107 
                   k +++ i       +
  CCE31484.1 1839 SKAGVKDIAlsishsD 1854
                  9998877766666653 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   2.4e-14   5.3e-11      30     117 ..    1499    1588 ..    1477    1589 .. 0.90
   2 ?   -3.6   0.1         5   1.1e+04      99     116 ..    1730    1747 ..    1722    1760 .. 0.47

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 2.4e-14
                       HHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG..SCTSEEE-THHHH-B-GGGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   30 iekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar..kqplavgSvKsniGHleaAaGvaelikvvlalkhgvipptlnl 117 
                       ++ ala+ g++ +d ++ + hgt+t+++D++E + + + +++ +r   + ++   +K ++GH ++AaG+  +  ++++l++g +p + n 
       CCE31484.1 1499 LRGALATWGLTIDDLGVASFHGTSTKANDKNESSVICQQLRHLGRseGNAVMGIFQKYLTGHPKGAAGAWMMNGCLQVLNTGLVPGNRNA 1588
                       789**************************************999975444555569******************************9986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5
                       HHHHHHHHHHTEE--BTT CS
  Ketoacyl-synt_C   99 likvvlalkhgvipptln 116 
                       + kv+ al h+v  ++ n
       CCE31484.1 1730 TEKVMEALAHKVANKNSN 1747
                       444444444444444333 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.1e-07   0.00024       3      79 ..     655     733 ..     652     756 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.1e-07
                 EEEET.TTSHHHHHHHHHHHHHHS-EEEEE-SS...--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS CS
          KR   3 ylitG.GlGgLGlelarwlaekgarhlvllsRsa.aadedskaliaelealgaevevvaaDvsdkdavealleeikaee 79 
                 +l+tG G+G++G e+ + l++ ga+ +v +sR + +++e  +++ ++  ++g ++ vv+    +k++veal+e i +++
  CCE31484.1 655 VLMTGaGAGSIGAEVLQGLISGGAKVIVTTSRFSrQVTEYYQSMYTRYGSRGSQIVVVPFNQGSKQDVEALVEYIYDTK 733
                 47788679************************75488999999*****************************9998776 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.7e-05      0.06       7      83 ..    1397    1476 ..    1395    1487 .. 0.76
   2 ?   -3.9   0.0         8   1.8e+04      14      59 ..    1736    1759 ..    1731    1766 .. 0.47

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
                       TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEEST.GGGSSHHHHH CS
  Methyltransf_25    7 GtGrltlalakrlg.kakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssga.lhhlsdedle 83  
                       G+G lt a  ++++  + ++ +D+  +++e+ ++++++ +  +vef++ ++ +++ +d+sfD  + +++ + h+++e ++
       CCE31484.1 1397 GQGVLTTAREHAGNfPSPLLDIDYRRRQIERRKKQIKQWQEsEVEFIHDEIAAMKTQDASFDEKLYAQErFVHIEKEAAR 1476
                       5555555544443346888889**************995445********************988888889999865433 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 8
                       HHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS CS
  Methyltransf_25   14 alakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlp 59  
                       ala+                      ++++++ nv + + d+++++
       CCE31484.1 1736 ALAH----------------------KVANKNSNVGVDVEDISAVN 1759
                       3333......................34344445555555555544 PP

>> PnpCD_PnpD_N  Hydroquinone 1,2-dioxygenase large subunit N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.24     118     147 ..    1102    1131 ..    1068    1133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
  PnpCD_PnpD_N  118 tnagfdpfaapeetgsafgrkhgdnieaie 147 
                     +a ++pf a +et   f r+hgd++e+ e
    CCE31484.1 1102 IEADLEPFEASKETAEEFKREHGDKVETFE 1131
                    57999*********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.11u 0.30s 00:00:01.41 Elapsed: 00:00:00.49
# Mc/sec: 11442.62
//
Query:       CCE31485.1  [L=128]
Description: related to U6 snRNA-associated Sm-like protein LSm4 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-14   51.8   0.2    7.4e-14   51.2   0.2    1.3  1  LSM       LSM domain
  ------ inclusion threshold ------
        6.3    7.6  34.0        8.8    7.1  34.0    1.2  1  GRP       Glycine rich protein family
        7.5    5.2   9.1        7.9    5.2   9.1    1.1  1  API5      Apoptosis inhibitory protein 5 (API5)


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.2   1.2e-17   7.4e-14      11      66 ..       1      56 [.       1      57 [. 0.96

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 1.2e-17
                EEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEGGGEEEEE CS
         LSM 11 vtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRGnnivlis 66
                ++velkng++l G L+ +D +mNl L++v+ t++++++  +l++ +++Gnni ++ 
  CCE31485.1  1 MLVELKNGETLNGHLVQCDTWMNLTLREVVQTSPGGDKFVRLKEAYVKGNNIKYLR 56
                68***************************************************985 PP

>> GRP  Glycine rich protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  34.0    0.0015       8.8      33      93 ..      64     126 ..      54     128 .] 0.63

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0015
         GRP  33 ksekeeevkdekyggggkh..ggGgygggggggngGGGykgggGgygggggggeggy.GgGygg 93 
                 k++++++ +++ +gg g+h   +  ++g+   g+gGGG  +g+Gg ggggggg+g++  gG+g+
  CCE31485.1  64 KVNESQKGQQNFRGGRGNHgqSRADHHGHNARGGGGGG-DRGRGGRGGGGGGGGGRGwRGGRGR 126
                 66777777778888999996666777777766655555.5555666665555555544444443 PP

>> API5  Apoptosis inhibitory protein 5 (API5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   9.1    0.0013       7.9     462     518 ..      66     118 ..      26     125 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0013
        API5 462 sesskaakkargekkqrqqyvppsgklsnkanessgkgrgsgsrgrgrg..gggrGrGr 518
                 +es+k++++ rg ++++ q      +  ++ ++++g g+g g rgrg++  ggg+G+Gr
  CCE31485.1  66 NESQKGQQNFRGGRGNHGQ-----SRADHHGHNARG-GGGGGDRGRGGRggGGGGGGGR 118
                 2455555555555555544.....222222222333.4444777777652344455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 980.43
//
Query:       CCE31486.1  [L=615]
Description: uncharacterized protein CPUR_05339 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-05   25.0   0.0        6.7    7.0   0.0    5.1  5  PPR_2     PPR repeat family
     0.0016   18.4   0.0         15    5.6   0.0    3.5  3  COX5A     Cytochrome c oxidase subunit Va
     0.0036   17.4   2.1         15    6.1   0.0    5.0  5  PPR       PPR repeat


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.036   2.2e+02       5      38 ..     160     194 ..     156     195 .. 0.92
   2 !    7.0   0.0    0.0011       6.7      11      45 ..     237     271 ..     234     274 .. 0.91
   3 !    6.8   0.0    0.0013       7.8      12      35 ..     380     403 ..     374     404 .. 0.92
   4 ?   -0.7   0.0      0.28   1.6e+03      20      45 ..     459     485 ..     451     486 .. 0.83
   5 ?    0.5   0.0      0.12     7e+02       4      25 ..     518     539 ..     516     545 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.036
       PPR_2   5 tyNtlIsglck.kgkveeAfklfneMkkrglePns 38 
                 +y +l++++   +g v+    l++e   r  +P+s
  CCE31486.1 160 IYECLMDAMIDpQGSVKGIRMLLDELAARDMKPSS 194
                 6999******99*******************9986 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0011
       PPR_2  11 sglckkgkveeAfklfneMkkrglePnsyTysili 45 
                  gl++++++e A+  ++eM++++   +s  y i i
  CCE31486.1 237 LGLLRDEQYELAYLRLSEMVDQNEAIDSWVYDIFI 271
                 599*************************9999987 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0013
       PPR_2  12 glckkgkveeAfklfneMkkrgle 35 
                 +++ +++++ Af  +  M+k+g++
  CCE31486.1 380 AFAANNDMDGAFHALCVMQKNGIP 403
                 7889******************96 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.28
       PPR_2  20 eeAfklfneMkk.rglePnsyTysili 45 
                 e A+ l+++  +  g + +s T  +li
  CCE31486.1 459 EAALNLYDDIPElCGEPASSTTIQTLI 485
                 89*******999668888888888877 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.12
       PPR_2   4 vtyNtlIsglckkgkveeAfkl 25 
                 ++y +lI +++++ +++ Af++
  CCE31486.1 518 HVYSSLIIACVEADDLDLAFRF 539
                 58999**************986 PP

>> COX5A  Cytochrome c oxidase subunit Va
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.018   1.1e+02      26      69 ..     178     221 ..     166     235 .. 0.85
   2 !    5.6   0.0    0.0026        15      40      82 ..     335     377 ..     325     386 .. 0.85
   3 !    5.2   0.0    0.0034        20      39      80 ..     514     557 ..     509     566 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.018
       COX5A  26 lrrglnnlfayDlvPepkvieaalracrrvndfalavRilEavk 69 
                 +r  l++l+a D+ P++ ++++al a     d+ l   +l++++
  CCE31486.1 178 IRMLLDELAARDMKPSSPMCHSALAALSIHPDYVLRQQVLDTMQ 221
                 78899*******************99888888877777776665 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0026
       COX5A  40 PepkvieaalracrrvndfalavRilEavkekvenkkqiYeyl 82 
                 P+  v+e++l  + r  d ala   l+++ +++    + +e++
  CCE31486.1 335 PSDGVVENVLATAARHGDTALATEALDKISRRTRLLAHHFEAV 377
                 8999************************999987766666665 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0034
       COX5A  39 vPepkvieaalracrrvndfalavRi.lEavkekvenkkq.iYe 80 
                 v +p+v ++ + ac   +d+ la R+ +Ea+k+    +++  Ye
  CCE31486.1 514 VRSPHVYSSLIIACVEADDLDLAFRFaFEAIKAMGRGENEeAYE 557
                 6789999******************879****865444332565 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.81   4.9e+03       6      28 ..     235     257 ..     234     259 .. 0.82
   2 ?    0.7   0.0      0.13   7.9e+02       2      23 ..     266     287 ..     265     289 .. 0.83
   3 !    5.3   0.0    0.0044        26       8      31 .]     379     402 ..     374     402 .. 0.92
   4 !    6.1   0.0    0.0025        15       2      21 ..     519     538 ..     518     543 .. 0.92
   5 ?   -2.1   0.0       1.1   6.4e+03      12      25 ..     589     602 ..     589     605 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.81
         PPR   6 lIsgycknGkleeAlelfkeMke 28 
                 l+ g+ +  ++e A   + eM++
  CCE31486.1 235 LVLGLLRDEQYELAYLRLSEMVD 257
                 67789999999999999999986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.13
         PPR   2 tynslIsgycknGkleeAlelf 23 
                 +y + I ++++ G+++e l l+
  CCE31486.1 266 VYDIFIVVFGQLGYFDELLLLL 287
                 6888999*********977665 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0044
         PPR   8 sgycknGkleeAlelfkeMkekGi 31 
                  +++ n++++ A+  ++ M+++Gi
  CCE31486.1 379 EAFAANNDMDGAFHALCVMQKNGI 402
                 6899******************97 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0025
         PPR   2 tynslIsgycknGkleeAle 21 
                 +y+slI +++ + +l+ A++
  CCE31486.1 519 VYSSLIIACVEADDLDLAFR 538
                 6***************9986 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 1.1
         PPR  12 knGkleeAlelfke 25 
                 ++G+ +e+++++++
  CCE31486.1 589 QEGMEDEVVKILRQ 602
                 58999*****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4625.63
//
Query:       CCE31487.1  [L=1120]
Description: uncharacterized protein CPUR_05340 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1696  (0.0945953); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.18u 0.28s 00:00:01.46 Elapsed: 00:00:00.49
# Mc/sec: 6847.41
//
Query:       CCE31488.1  [L=646]
Description: related to ATP-dependent DNA helicase II, 70 kDa subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-44  152.7   0.0    2.7e-44  151.3   0.0    1.7  2  Ku        Ku70/Ku80 beta-barrel domain
    1.9e-38  132.5   0.0    2.7e-38  131.9   0.0    1.3  1  Ku_N      Ku70/Ku80 N-terminal alpha/beta domain
      2e-25   89.3   0.1    6.3e-25   87.7   0.1    1.9  1  Ku_C      Ku70/Ku80 C-terminal arm
    6.9e-08   32.1   0.0    1.5e-07   31.0   0.0    1.6  1  SAP       SAP domain
  ------ inclusion threshold ------
      0.058   13.1   1.8       0.81    9.4   0.0    2.8  3  HeH       HeH/LEM domain


Domain annotation for each model (and alignments):
>> Ku  Ku70/Ku80 beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.2   4.3e+03     167     197 ..     113     143 ..      68     148 .. 0.63
   2 !  151.3   0.0   7.5e-48   2.7e-44       1     187 [.     279     472 ..     279     490 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.2
          Ku 167 lvlvtLpfaddiRslkfpsl.dee.eeekknkp 197
                 +     p add+++l    l +e  +eek  +p
  CCE31488.1 113 FTDLDVPSADDVKKL--KALvEEGdDEEKVLTP 143
                 555667888999833..3334222244455455 PP

  == domain 2  score: 151.3 bits;  conditional E-value: 7.5e-48
          Ku   1 igggvsipVklykateeakk..pkfkkldketnepvkvetkyvcsdt.gevdeedivkgyeyGgevvpltkeelekiksfdskglkllgFvplseilke 96 
                 i++g++i+Vk+y+   ++++      +ld et +  + et+++ +d+  +v++ +i+k+y++Gge+v++t+ee+++++ f+s+ ++++gF+p+ ++l+ 
  CCE31488.1 279 IAPGLRIAVKGYNILHRQTParTCYIWLDGETPQLAQGETTRLAEDStRTVEKGEIKKAYKFGGEFVYFTPEEQKTLRDFGSPIIRIIGFKPR-KLLPV 376
                 6899*************999556667799999999999********9556*****************************99************.77*** PP

          Ku  97 ylsikssyfiyPddkdekgstkafsaLveamleskkvaivrfvlrskskprlvaLvPqeeelsseee....keglvlvtLpfaddiRslkfpsl.d 187
                 + s+k+s+fi+P+++d  gs+++f+aL++++++ +k++++++v rs+++p l+a++P++e ++++++    + gl++++Lpfadd+R++k  s  +
  CCE31488.1 377 WASVKKSTFIFPSEEDYVGSSRVFTALWQKLIKDDKFGLAWCVVRSNARPMLAAIIPSREGSDEDSGspflPAGLWIYPLPFADDLREIKTTSQiT 472
                 ************************************************************9999877***666**************888777642 PP

>> Ku_N  Ku70/Ku80 N-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   0.0   7.7e-42   2.7e-38       1     219 [.      31     270 ..      31     271 .. 0.91

  Alignments for each domain:
  == domain 1  score: 131.9 bits;  conditional E-value: 7.7e-42
                 EEEEEEE-SHHHHCTTCCSCC.......HHHHHHHHHHHHHHHHHHCTCSEEEEEEEESSSSTBS........TTTCTTEEEEEECCCHHHHHHHHHHC CS
        Ku_N   1 avvfviDvspaMfesskeees.......pfelalkciaellkrkvisrskDlIavvlygtdesen........keqlenitvlreldlpdaellkelkq 84 
                 a++  iDvs++M++s +++ s       p+e alkc + l+ +++is++kD+++++l+gt++++         + +++n +++ +ld p+a+ +k+lk 
  CCE31488.1  31 AIIMAIDVSESMLKSPPPSNSkkadqdsPLEAALKCAYHLMEQRIISNPKDMMGILLFGTEKTKFhneesgrgGLGYPNCYLFTDLDVPSADDVKKLKA 129
                 68999**********999999999***************************************988999999999************************ PP

                 CHHHCCHHHHCCCTTSS-TTHHHHHHHHHHHHHHTTSSESEEEEEEEESSSSTCC.GHHHHHHHHHHHHHHHHHHCTEEEEEEEC.TSSSCECCTCHHH CS
        Ku_N  85 ivesedasveglaedssqasllsaLivclellqkvgkklskkriflftdlddpfe.dsdklelilqklkakDlrderieldllkL.kkakkfdinefyk 181
                  ve++d + + l  +++   ++++L ++ ++++  ++++  +r+f++td+ddp++ d++ ++++  +  akDl d +i++dl+++   + kf+ ++fy 
  CCE31488.1 130 LVEEGDDEEKVLTPSKEPVIMSNVLFCANQIFTTKAANFGSRRLFIITDNDDPHPeDKAAASAAAVR--AKDLYDLGITIDLFPIsHHDSKFEFSKFYD 226
                 ****7777777777778889999999999*************************8788888888888..****************889999******** PP

                 HCHC...HHHHHHHHHHHCCCSG...EHHHHHHHHHHHCSCS-E CS
        Ku_N 182 diik...lgsdevkevmlslege...kleellaklkakkkakRa 219
                 di +   ++++ v  v +s +g+    l+ l + + +k++ kR+
  CCE31488.1 227 DIVYrdtVAEANVSAVPFSKSGDglsLLSSLVSNINSKQTPKRS 270
                 **761116677777778888888**9999**************8 PP

>> Ku_C  Ku70/Ku80 C-terminal arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.1   1.8e-28   6.3e-25       2      85 ..     496     581 ..     495     584 .. 0.90

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 1.8e-28
                 --GGG---HHHHHHHHHHHHHHTT---..---SS--HHHHHHHHH-....HHHHHHHHHHHHH...HHHHH.......---THHHH CS
        Ku_C   2 ydpskfpNPsLqrhykiLqalAldedlpeeledktlpkyeaidkragslleewkelfeleeedke.kkkekrkaede.deepaakk 85 
                 y+p+k+pNP+Lq+hy+iL+alAlde++pee++d t+pk +ai+krag +leew  ++e+++  ++  k+ kr+ +d+  ++p++k+
  CCE31488.1 496 YNPMKYPNPALQWHYRILKALALDEEVPEEPDDATKPKSRAISKRAGGYLEEWSGKLEQDAGSASsAKELKREIDDDgFDRPTKKR 581
                 ************************************************************99986577888888884356666665 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   4.3e-11   1.5e-07       2      35 .]     609     642 ..     608     642 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 4.3e-11
                 TT--HHHHHHHHHHTT--TTS-HHHHHHHHHHHH CS
         SAP   2 skltVaeLKeeLkkrGLptsGkKaeLieRLkeyl 35 
                  k+tVa+L++   + G+ ++GkKa+L++ ++ +l
  CCE31488.1 609 MKMTVAQLRDVAVSKGINIAGKKAVLVDKIETWL 642
                 79****************************9886 PP

>> HeH  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.9     0.086   3.1e+02      21      28 ..      48      55 ..      47      55 .. 0.95
   2 ?   -3.3   0.0       2.3   8.1e+03       1      11 [.     591     601 ..     591     606 .. 0.88
   3 ?    9.4   0.0   0.00023      0.81       3      30 ..     610     635 ..     609     636 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.086
         HeH 21 PsnaKKad 28
                Psn+KKad
  CCE31488.1 48 PSNSKKAD 55
                9******8 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.3
         HeH   1 pksLtVaqLRr 11 
                 p+s+ +a LR+
  CCE31488.1 591 PSSMSMAALRE 601
                 899999*9*98 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00023
         HeH   3 sLtVaqLRriLvehgveyPsnaKKadLv 30 
                 ++tVaqLR + v++g+ +    KKa Lv
  CCE31488.1 610 KMTVAQLRDVAVSKGINIA--GKKAVLV 635
                 89**************986..4677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4722.76
//
Query:       CCE31489.1  [L=418]
Description: probable ferrochelatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-96  322.9   0.0    2.2e-96  322.7   0.0    1.0  1  Ferrochelatase  Ferrochelatase
  ------ inclusion threshold ------
      0.043   13.4   0.0      0.068   12.7   0.0    1.2  1  MP              Viral movement protein (MP)


Domain annotation for each model (and alignments):
>> Ferrochelatase  Ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.7   0.0  2.5e-100   2.2e-96       2     316 ..      52     381 ..      51     382 .. 0.94

  Alignments for each domain:
  == domain 1  score: 322.7 bits;  conditional E-value: 2.5e-100
                     EEEEEEE----SSCCCHHHHHHHHCT-TTTS-S-TTTHHHHHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHHHHHH-...--EEEEE CS
  Ferrochelatase   2 tavLLlnlGgPekpedvrpflenllsdrrvielplllqkllaklilkerlekvaekYekigggSPlneitrkqaealekelaerg...idvkvyl 93 
                     ta+++ln+GgP+++ dv +fl++l+sd ++i+l  ++q++++ li+k+r++k++++Y++igggSP++++++ q+ +++k l++ +   +++k y+
      CCE31489.1  52 TAMVFLNMGGPSTTGDVGDFLNRLFSDGDLIPLG-RFQNYIGPLISKRRTPKIQKQYAAIGGGSPIRKWSEYQCGEMCKILDKISpetAPHKPYV 145
                     79******************************99.************************************************9999******** PP

                     EESSSSSBHHHHHHHHHCTT-.....SEEEEEES-SS--TTTHHHHHHHHHHHHHH.........TT-SSEEEEE---TT-HHHHHHHHHHHHHH CS
  Ferrochelatase  94 amrywePsiedaleelkadgv.....ervvvlplyPqysasttgssleeleralkk.........kreapevrvirqfydhpgyiealaesikea 174
                     a+ry +P++e+++++l +dg+      r+v++++yPqys+sttgssl+el++++++         +  +++++vi++++ h g++ea+a++i+++
      CCE31489.1 146 AFRYADPLTEEMYQRLFDDGFgngkgGRAVAFSQYPQYSCSTTGSSLNELWKWRHRlenkkadetGSGTISWSVIDRWPAHVGLVEAVARNIEAK 240
                     *********************9888899**************************65556678888889999************************ PP

                     HTTS-HC...C-EEEEEEE--BHHHHT.TT-SHHHHHHHHHHHHHHHTTT-S-EEEEEE---SSS-BSSSBHHHHHHHHCCC.-S-EEEE-TT-S CS
  Ferrochelatase 175 leelpeek..kakllfsaHglPeravkkkgdpYqqqveetarlvaealglkeevelayqSrvGpeeWlePdtddtleelaekgvkaivvvpigFv 267
                     l+e+pee+   ++llfsaH+lP+++v+ +gdpY+++v +t+ +v+++l+ +++++l++qS+vGp  Wl+P+t++t+e++ ++g k++v++pi+F+
      CCE31489.1 241 LAEYPEERrkDVVLLFSAHSLPMSVVN-RGDPYPAEVAATVYAVMQRLKSSNSYRLCWQSQVGPSAWLGPQTSTTVEQYIARGQKDLVLIPIAFT 334
                     ****9444457***************6.5*******************99999****************************************** PP

                     S--HHHHIIIIIIIITTSTT..CCCEEE----TT-HHHHHHHHHHHHHH CS
  Ferrochelatase 268 sDhlEtleeldiearelaeeaggekfvrvptlndspafiealadlveee 316
                     sDh+Etl+eld e+  +  +   ++++r+ +lnds  fiealad+++++
      CCE31489.1 335 SDHIETLYELDLEVIGESGHP--DTVKRADSLNDSRVFIEALADIAKAH 381
                     ************995555443..569*******************9987 PP

>> MP  Viral movement protein (MP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.6e-06     0.068     126     166 ..     175     216 ..     156     223 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.6e-06
          MP 126 vkftvkpnysiSlqdknLdkslsvlvnfenvn.mkkgskpfs 166
                 v f  +p+ys S++   L++ ++ ++ +en++  + gs  +s
  CCE31489.1 175 VAFSQYPQYSCSTTGSSLNELWKWRHRLENKKaDETGSGTIS 216
                 6799***************************96666776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3077.28
//
Query:       CCE31490.1  [L=579]
Description: probable cell division control protein CDC3 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.5e-118  393.6   0.1   4.5e-118  393.6   0.1    1.5  2  Septin        Septin
    5.1e-08   33.0   1.3    8.2e-08   32.3   0.0    2.0  2  MMR_HSR1      50S ribosome-binding GTPase
    0.00011   21.7   1.2       0.01   15.4   0.0    3.1  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    0.00016   22.2   2.1       0.04   14.4   0.0    2.6  2  ABC_tran      ABC transporter
     0.0017   18.3   7.3     0.0018   18.2   0.3    3.3  2  RsgA_GTPase   RsgA GTPase
      0.002   17.5   0.5     0.0068   15.8   0.0    2.0  2  AIG1          AIG1 family
      0.002   18.5   0.0     0.0061   17.0   0.0    1.8  1  AAA_16        AAA ATPase domain
      0.007   16.6   0.0      0.016   15.4   0.0    1.6  1  Roc           Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.017   14.7   0.4       0.11   12.0   0.0    2.5  3  Ras           Ras family
      0.019   15.3   0.8      0.046   14.0   0.0    2.2  2  AAA_22        AAA domain
      0.023   14.4   0.0      0.044   13.5   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
      0.037   14.5   4.5        9.8    6.6   5.0    2.2  2  AAA_23        AAA domain
      0.076   13.1   6.8        1.2    9.2   0.0    3.5  3  Dynamin_N     Dynamin family
      0.087   13.2   0.4        1.1    9.7   0.0    2.6  2  RNA_helicase  RNA helicase
      0.097   12.4   0.0       0.21   11.3   0.0    1.6  1  AAA_24        AAA domain
       0.14   11.6   0.0       0.28   10.7   0.0    1.4  1  AAA_7         P-loop containing dynein motor region
       0.71    9.4   6.9        1.2    8.6   6.9    1.3  1  Exonuc_VII_L  Exonuclease VII, large subunit
       0.93    8.5   7.4        1.6    7.8   7.4    1.4  1  Atg14         Vacuolar sorting 38 and autophagy-related subun
       0.93    9.1  10.0        2.3    7.8  10.0    1.6  1  AP1AR         AP-1 complex-associated regulatory protein
        4.4    7.3   7.0        6.9    6.7   0.0    2.6  2  DUF87         Helicase HerA, central domain
        9.5    6.3  14.6         17    5.4  14.6    1.3  1  UPF0242       Uncharacterised protein family (UPF0242) N-term


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.6   0.1  5.3e-121  4.5e-118       1     278 [.     203     481 ..     203     484 .. 0.97
   2 ?   -3.5   1.2       5.8   4.9e+03      24      61 ..     517     560 ..     505     562 .. 0.49

  Alignments for each domain:
  == domain 1  score: 393.6 bits;  conditional E-value: 5.3e-121
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS------------.------S-EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHHHH CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdlieeekleease.kkkktveikkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeeylr 98 
                 kg++f++mvvGesglGk+tl+ntlf+t+l++ ++ + +s+  + ktv+i++ ++ iee gv+l+ltv+DtpgfGd+v+n++sw+piv+ i+ ++++yl+
  CCE31490.1 203 KGFNFNVMVVGESGLGKSTLVNTLFNTSLYPPRERKGPSHdIIPKTVQIQAISADIEEAGVRLRLTVVDTPGFGDFVNNDESWRPIVDDIERRYDAYLD 301
                 79*******************************9**99986789******************************************************* PP

                 HCTSS--SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHHHHH CS
      Septin  99 eesklkRkkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakelsek 197
                 +e+k++R +ivD+R+Hac++fi+Ptgh lkpld+e+m++l++kvnliPviaK+Dtlt+eE+ +fK +i ++++++ i+i++  + +e +dee+  ++++
  CCE31490.1 302 AENKVNRMNIVDNRIHACVFFIQPTGHSLKPLDIEVMRRLHTKVNLIPVIAKSDTLTDEEIASFKARILADIKHHGIQIFE-GPRYELDDEETIAENNE 399
                 *********************************************************************************.66666777999999*** PP

                 HHHC-SEEB-SSSSEEEE.SSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XXXXX CS
      Septin 198 lkeslPfaivgsneliek.kgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklsklkek 278
                 + +++Pfa+vg++++i++ +g+ vrgR+ypWG++ev+ne+h+dF+kLr++l++th+e+Lke t+++lYe+yR++kl ++  +
  CCE31490.1 400 IMSKVPFAVVGATNEIKTaDGRGVRGRQYPWGLIEVDNEEHCDFVKLRQMLIRTHMEELKEHTNNTLYENYRTDKLIAMGVS 481
                 *****************99*********************************************************988765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.8
                 TSSSS------------......------S-EEEEEEEEETTCE CS
      Septin  24 lfetdlieeekleease......kkkktveikkkkvvieedgvk 61 
                 +f++++ e+e+  ++se      + + + +++++++++e+++++
  CCE31490.1 517 VFQQKVAEKESKLKQSEeelyarHREMKEQLDRQRAELEDKKQR 560
                 55555555532222222111111333445566666666666655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   9.6e-11   8.2e-08       1     100 [.     208     340 ..     208     353 .. 0.52
   2 ?   -2.3   0.6       5.2   4.4e+03      62      83 ..     498     519 ..     442     559 .. 0.62

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 9.6e-11
                 EEEEEESTTSSHHHHHHHHHT........STEEESSSTTSSSSEEEEEEEET....TEEEEEEECGGC................SSHHHHHHHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg........ekaivsdkpgtTrdinegrvklk....gkeielvDtpGl................iegaseekglgkafl 71 
                 +v++vG +  GKStL+n+l++        +k    d+  +T +i+ +  +++    + ++++vDtpG+                i         ++++ 
  CCE31490.1 208 NVMVVGESGLGKSTLVNTLFNtslyppreRKGPSHDIIPKTVQIQAISADIEeagvRLRLTVVDTPGFgdfvnndeswrpivddI---------ERRYD 297
                 599*****************9555555433556666667777776666553322222569*******655444444444332221.........33333 PP

                 H..............HHCTSEEEEEEETTTTCSHHHHHHHHHH CS
    MMR_HSR1  72 a..............leeadlillvvdaseeklkpldeeleel 100
                 a               ++ ++ ++ ++ + ++lkpld e+ + 
  CCE31490.1 298 AyldaenkvnrmnivDNRIHACVFFIQPTGHSLKPLDIEVMRR 340
                 2111111111111112224444444443344566666665555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.2
                 HHHHHHHHHHHHHCTSEEEEEE CS
    MMR_HSR1  62 eekglgkaflaleeadlillvv 83 
                 ee+ l ++ la+ ea++ ++  
  CCE31490.1 498 EERALHEQKLAKMEAEMKMVFQ 519
                 3334444444444443322222 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.2e-05      0.01       5      86 ..     208     281 ..     206     290 .. 0.71
   2 ?    3.2   0.5     0.063        54     120     180 ..     342     416 ..     332     562 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE..TTCSSEEEEEEEESSSGGGHHH CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle..ketkkylinliDtPGHvdFske 86 
                 n++++g    GK+TL+ +L  ++      +e+++     D  ++      T++++ais +  + + + +++++DtPG  dF+++
  CCE31490.1 208 NVMVVGESGLGKSTLVNTLFNTSLYPP--RERKGP--SHDIIPK------TVQIQAISADieEAGVRLRLTVVDTPGFGDFVNN 281
                 99*****************95555533..466652..3555553......4444444444324556699************998 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.063
                 HTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH..............HHHHHHHHHTTTTTEEEEEEBTTTTBT CS
    GTP_EFTU 120 kegvpiivfiNKmDrl.kaelkeiveevkqklsrk..............eeklekygekgekevpvvfgSalkgeg 180
                   +v++i +i K D l ++e+   +  +  +++++              ee++ +  e   ++vp++ + a +  +
  CCE31490.1 342 HTKVNLIPVIAKSDTLtDEEIASFKARILADIKHHgiqifegpryelddEETIAENNEIM-SKVPFAVVGATNEIK 416
                 356779********9998899998888888886668888888887765533333333333.577777776666553 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   4.7e-05      0.04      14      33 ..     209     228 ..     204     309 .. 0.90
   2 ?    4.4   2.5     0.059        50      46      96 ..     499     558 ..     487     571 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.7e-05
                 EEEEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllag 33 
                 v +vGe+G GKStL+++l +
  CCE31490.1 209 VMVVGESGLGKSTLVNTLFN 228
                 789*************9975 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.059
                 TCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxx RF
    ABC_tran  46 gkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekalsklglke 96 
                 ++ l+eq+l ++++e+++++q++   +e++++++         e++e++++ +++l++k+
  CCE31490.1 499 ERALHEQKLAKMEAEMKMVFQQKVAEKESKLKQSeeelyarhrEMKEQLDRQRAELEDKK 558
                 56778899**************88888888777778999998888888888888888776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   2.1e-06    0.0018     102     133 ..     209     257 ..     187     280 .. 0.70
   2 ?    2.3   0.0      0.16   1.4e+02      40      80 ..     338     381 ..     301     411 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.1e-06
                  EEEECSTTSSHHHHHHHHCTT.................-----S----- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe.................lelktgevsek 133
                  +++vG+SG GKStL+n+l ++                 ++++++++s++
   CCE31490.1 209 VMVVGESGLGKSTLVNTLFNTslypprerkgpshdiipKTVQIQAISAD 257
                  5689**************9875666666555555555555555555554 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.16
                  HHHHHTT-EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSEEE CS
  RsgA_GTPase  40 vlaeekgiepvivlnKiDlleeee...eleelkeelealgyevl 80 
                  +   +++++++ v+ K D l++ee      ++ +++++ g++++
   CCE31490.1 338 MRRLHTKVNLIPVIAKSDTLTDEEiasFKARILADIKHHGIQIF 381
                  555688999999************55433445555666666665 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     8e-06    0.0068       2      67 ..     208     283 ..     207     300 .. 0.65
   2 ?   -1.8   0.9       1.8   1.6e+03     148     175 ..     506     533 ..     453     558 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8e-06
                 EEEEESSTTSSHHHHHHHHHTS--SS--TT...TS--.-SS-E..EEEE..EETT..EEEEEEE--SCCCTTCCHH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFeskls...aqsv.tkkcq..kksr..twdg..kkinViDTPglfdlsvsad 67 
                 ++++vG +g GkS+ +N++ +++ +  + +   ++ +  k++q    s+  +++g   ++ V+DTPg  d  ++++
  CCE31490.1 208 NVMVVGESGLGKSTLVNTLFNTSLYPPRERkgpSHDIiPKTVQiqAISAdiEEAGvrLRLTVVDTPGFGDFVNNDE 283
                 799*****************99997544331113444133333003333224444445789******988766554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
                 HHHHHTTTSEEEEETTHHHHHHHHHHHH CS
        AIG1 148 evlkecgnRvvlfnnktaskeekeeQvk 175
                 ++ k+  + +++f+ k a+ke k +Q +
  CCE31490.1 506 KLAKMEAEMKMVFQQKVAEKESKLKQSE 533
                 4445555556666666666666666655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.1e-06    0.0061      21      47 ..     203     229 ..     195     271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.1e-06
      AAA_16  21 sgrpelvllsGesGvGKsslvrellra 47 
                 +g   +v+++GesG GKs+lv++l++ 
  CCE31490.1 203 KGFNFNVMVVGESGLGKSTLVNTLFNT 229
                 5555689****************9974 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.9e-05     0.016       2      65 ..     209     274 ..     208     285 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.9e-05
                 EEEESSTTSSHHHHHHCHCT-CCC.-EEETTTTEEEEEEECGGSGGCTTB..TTTTCEEEEEEEE-S CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfs.ekekstigvdfltkevtkikgvend..kkvkkvklniWDtaG 65 
                 v++vG+sg GK++l++ + + +   ++e++  + d++ k+v +i+ ++ d  ++  +++l + Dt G
  CCE31490.1 209 VMVVGESGLGKSTLVNTLFNTSLYpPRERKGPSHDIIPKTV-QIQAISADieEAGVRLRLTVVDTPG 274
                 89***************999877526677778888988887.6776654311444556677777776 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013      0.11       2      61 ..     209     278 ..     208     286 .. 0.69
   2 ?   -2.8   0.0       4.7     4e+03      96     132 ..     336     372 ..     329     382 .. 0.77
   3 ?   -1.2   0.3       1.5   1.3e+03     117     153 ..     497     533 ..     450     541 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
                 EEEEESTTSSHHHHHHH.HHHSSCSSSCTTTSSEEEEEEEEEET.........TEEEEEEEEEETTSGGG CS
         Ras   2 lvlvGdsavGKtslllr.fvkdkFkeeyesTigvdfytkeievd.........gkevkleiwDTAGqeef 61 
                 +++vG+s+ GK++l++  f ++ ++ +  +    d   k+++++         g +++l++ DT G  +f
  CCE31490.1 209 VMVVGESGLGKSTLVNTlFNTSLYPPRERKGPSHDIIPKTVQIQaisadieeaGVRLRLTVVDTPGFGDF 278
                 789************8736667777665554444444444444444444444499999******998777 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.7
                 HHHHHSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHH CS
         Ras  96 eikrvaeenvpivLvGnKvDleekravsteegeelak 132
                 e+ r  +++v+++ v  K+D  +++++   +++ la+
  CCE31490.1 336 EVMRRLHTKVNLIPVIAKSDTLTDEEIASFKARILAD 372
                 5566666778899999999999999999988888774 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.5
                 GGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHH CS
         Ras 117 eekravsteegeelakelglkfletSAktnenveeaf 153
                 ee+ra+++++  ++  e+++ f +  A+++ ++++  
  CCE31490.1 497 EEERALHEQKLAKMEAEMKMVFQQKVAEKESKLKQSE 533
                 3478888888888888888888888888888887765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.4e-05     0.046       8      29 ..     209     230 ..     208     380 .. 0.89
   2 ?   -1.7   0.2       3.9   3.3e+03      80      80 ..     469     469 ..     426     552 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.4e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++v+GesG GK+tl+++l+++ 
  CCE31490.1 209 VMVVGESGLGKSTLVNTLFNTS 230
                 589***************9985 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.9
      AAA_22  80 e 80 
                 +
  CCE31490.1 469 N 469
                 1 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.1e-05     0.044      24      48 ..     208     233 ..     194     238 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
      AAA_29  24 atlltGpsGsGKSTllDAi.qalLvp 48 
                 +++++G+sG GKSTl+  + ++ L+p
  CCE31490.1 208 NVMVVGESGLGKSTLVNTLfNTSLYP 233
                 689************97752345555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.028        24      23      46 ..     210     234 ..     200     316 .. 0.72
   2 ?    6.6   5.0     0.011       9.8      91     193 ..     445     562 ..     364     566 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.028
      AAA_23  23 lItGpNGaGKTTildAik.laLyge 46 
                  ++G+ G GK+T+++ +    Ly  
  CCE31490.1 210 MVVGESGLGKSTLVNTLFnTSLYPP 234
                 679***********87652456654 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.011
      AAA_23  91 ererelskkkgkttkkaklelleideleqfisellgskki...........ilnlilflgqerfeefelkdkkerleelekeleeledekkllekl... 175
                 + ++ l+++ +++ k+ + + l+++ +++++     s+++           + +  +++ q+ ++++++++   + + +eke + ++ e++l  ++   
  CCE31490.1 445 KLRQMLIRTHMEELKEHTNNTLYENYRTDKLIAMGVSQDPsvfkevnpavkQEEERALHEQKLAKMEAEMKMVFQQKVAEKESKLKQSEEELYARHrem 543
                 444444445555555555555555444444443222222243322222221222222222222333333333334455555555555555544444555 PP

      AAA_23 176 .eqekekekeleeleeele 193
                  eq+  +++ele++++++e
  CCE31490.1 544 kEQLDRQRAELEDKKQRIE 562
                 5555556667777777776 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0014       1.2       1      25 [.     209     233 ..     209     240 .. 0.87
   2 ?    4.6   0.0     0.036        30     100     119 ..     264     283 ..     247     341 .. 0.78
   3 ?   -2.7   4.2       6.3   5.4e+03      47      80 ..     528     562 ..     468     572 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0014
                 EEEEEBTTTTHHHHHHHHHTS--S- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilp 25 
                 ++vvG+   GKS+++n L    + p
  CCE31490.1 209 VMVVGESGLGKSTLVNTLFNTSLYP 233
                 79****************9887666 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.036
                 S-SEEEEE---B-SSSGTTS CS
   Dynamin_N 100 vkgltlvDlPGldsvnkrdq 119
                 + +lt+vD+PG+ +  ++d+
  CCE31490.1 264 RLRLTVVDTPGFGDFVNNDE 283
                 5789********98666665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 6.3
                 C.CS...SSEEEET-EB--CHHHHHHHHHHHHHHH CS
   Dynamin_N  47 s.eravkeelkekekkledfsevreeieketekia 80 
                 + +++++e +  +++  e++++ r e+e+++++i+
  CCE31490.1 528 KlKQSEEELYARHREMKEQLDRQRAELEDKKQRIE 562
                 11233333444446666666666666666666666 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0012       1.1       1      21 [.     209     229 ..     209     246 .. 0.86
   2 ?    0.2   0.4       1.1   9.7e+02      16      89 ..     448     523 ..     445     534 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0012
  RNA_helicase   1 iwlyGpsgeGKStlakeLaka 21 
                   ++++G+sg GKStl+++L ++
    CCE31490.1 209 VMVVGESGLGKSTLVNTLFNT 229
                   6899*************9876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.1
  RNA_helicase  16 keLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdee.nps.dlaelirlvsstpyplnmasl 89 
                   + L+++ +++lk+++++++y +  +d+   +  +q+  v+ +++  +++e +    ++ l ++    ++  + +  
    CCE31490.1 448 QMLIRTHMEELKEHTNNTLYENYRTDKLIAMGVSQDPSVFKEVNPAVKQEeERAlHEQKLAKMEAEMKMVFQQKVA 523
                   5688888999999999999998888888888888999999998877766556665666666666665555555444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025      0.21       4      27 ..     208     231 ..     206     304 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
      AAA_24   4 kiliyGpsgiGKTtlakelgpkpl 27 
                 +++++G+sg GK+tl+++l ++ l
  CCE31490.1 208 NVMVVGESGLGKSTLVNTLFNTSL 231
                 799**************9944444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00033      0.28      34      55 ..     207     228 ..     199     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00033
       AAA_7  34 kpvllvGptGtGKtviikdllk 55 
                  +v++vG++G GK++++++l++
  CCE31490.1 207 FNVMVVGESGLGKSTLVNTLFN 228
                 68****************9665 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   6.9    0.0014       1.2     170     250 ..     486     562 ..     436     576 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0014
  Exonuc_VII_L 170 rleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlkekleekkerlkklkerlelleekkerle 250
                    +++++ ++k+  e  + ++q+l ++e++++   ++++++k+++l++ +e+l ++ +e+ke+l++++++   le+kk+r+e
    CCE31490.1 486 VFKEVNPAVKQE-EERALHEQKLAKMEAEMKMVFQQKVAEKESKLKQSEEELYARHREMKEQLDRQRAE---LEDKKQRIE 562
                   444444444432.22334556666666666666666677777777777766633344444444333222...333333332 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.4    0.0019       1.6      62     107 ..     519     564 ..     452     574 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0019
       Atg14  62 iknkkakleelksliadlrerlqelkdklsqlkkeieekkkklakl 107
                  ++ ++k ++lk+  ++l +r +e+k++l+++++e+e+kk+++++ 
  CCE31490.1 519 QQKVAEKESKLKQSEEELYARHREMKEQLDRQRAELEDKKQRIESG 564
                 3444677778888888899999999999999999999999999875 PP

>> AP1AR  AP-1 complex-associated regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  10.0    0.0027       2.3      42     118 ..     497     571 ..     481     577 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0027
       AP1AR  42 eeianlkerrydaiadkqklideklqaelaaqeeklrleeealyaaqreaa.rlakerklkeqkrqrvkervepensd 118
                 ee   l+e++   +a+ + ++ + +q+++a +e kl+  ee lya  re   +l ++r  +e+k+qr+++   +e+++
  CCE31490.1 497 EEERALHEQK---LAKMEAEMKMVFQQKVAEKESKLKQSEEELYARHREMKeQLDRQRAELEDKKQRIESGRPIEKEG 571
                 4555555555...55666778888999**********************753799*************9877777766 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0081       6.9      28      45 ..     211     228 ..     204     239 .. 0.88
   2 ?    1.6   3.1       0.3   2.6e+02     116     175 ..     498     561 ..     445     575 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0081
       DUF87  28 ilgsTGsGKSntvavLle 45 
                 ++g++G GKS++v  L++
  CCE31490.1 211 VVGESGLGKSTLVNTLFN 228
                 99************9987 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.3
       DUF87 116 vqrsvleealdqaka....keekeklssdepveklleelkkekeelrklknqaiarlldkledl 175
                 ++r++ e++l++++a      +++ +  ++ +++++eel+ +++e +++ ++++a+l+dk++++
  CCE31490.1 498 EERALHEQKLAKMEAemkmVFQQKVAEKESKLKQSEEELYARHREMKEQLDRQRAELEDKKQRI 561
                 3444444444444321111233333444444444444444444555555555555555555554 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  14.6      0.02        17      65     162 ..     462     565 ..     444     573 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.02
     UPF0242  65 l.....ekskleekeaklteldeglktkeealeelqeeeeeLk.eeldakeeelerlkeenq.qLqekleaiaedfeelkleleeqLaekqellqeyqe 156
                 +     e+  +++ +a+ +++d+++ ++ +     qeee+ L+ ++l+++e e++   +++  + ++kl+++ e+  +  +e++eqL++++  l++ ++
  CCE31490.1 462 TnntlyENYRTDKLIAMGVSQDPSVFKEVNPAV-KQEEERALHeQKLAKMEAEMKMVFQQKVaEKESKLKQSEEELYARHREMKEQLDRQRAELEDKKQ 559
                 333444666666666666666644333333222.35555555515588899888877666654778899999999999999999999999999999999 PP

     UPF0242 157 tieeqr 162
                  ie+ r
  CCE31490.1 560 RIESGR 565
                 998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1959  (0.109264); expected 358.6 (0.02)
Passed bias filter:                      659  (0.0367561); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 4059.43
//
Query:       CCE31491.1  [L=153]
Description: related to outer mitochondrial membrane protein FIS1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-26   90.6   2.0    8.5e-26   89.8   2.0    1.4  1  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
    6.7e-18   64.1   0.9      1e-17   63.5   0.1    1.7  2  Fis1_TPR_N  Fis1 N-terminal tetratricopeptide repeat
     0.0045   17.0   1.5       0.01   15.9   1.5    1.7  1  TPR_2       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   2.0   1.4e-29   8.5e-26       1      53 []      74     126 ..      74     126 .. 0.99

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 1.4e-29
                 HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTT CS
  Fis1_TPR_C   1 reclYylAlGhyklgeYseArryvdalLeiEPenrQaqsLkeliedkikkegl 53 
                 reclYylAlG+yklg+Y eArry+d lL +EP n Qa++L++li+dk++kegl
  CCE31491.1  74 RECLYYLALGNYKLGNYGEARRYNDLLLDKEPANLQAADLRQLIDDKVAKEGL 126
                 9***************************************************8 PP

>> Fis1_TPR_N  Fis1 N-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.1   1.7e-21     1e-17       1      31 [.      37      67 ..      37      69 .. 0.98
   2 ?   -2.7   0.0      0.81   4.8e+03      22      27 ..     128     133 ..     127     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 1.7e-21
  Fis1_TPR_N  1 qtkFnYAWgLvkSknredqqeGiaLLeelyr 31
                qtkFnYAWgLvkS+nr++qq+G++LL++++r
  CCE31491.1 37 QTKFNYAWGLVKSNNRNEQQLGVRLLSDIFR 67
                9*****************************8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.81
  Fis1_TPR_N  22 GiaLLe 27 
                 G+a+L+
  CCE31491.1 128 GVAILS 133
                 9***97 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.5   1.7e-06      0.01       2      23 ..      75      96 ..      74     107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-06
       TPR_2  2 ealynlGlayyklgdyeeAlea 23
                e+ly+l+l  yklg+y eA+++
  CCE31491.1 75 ECLYYLALGNYKLGNYGEARRY 96
                78******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1104.37
//
Query:       CCE31492.1  [L=199]
Description: uncharacterized protein CPUR_05345 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-37  128.4   4.1      7e-36  122.7   0.0    2.3  2  Spc24           Spc24 subunit of Ndc80
  ------ inclusion threshold ------
      0.011   15.7   5.5      0.017   15.1   5.5    1.3  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.035   13.9   6.4      0.045   13.6   6.4    1.1  1  DUF724          Protein of unknown function (DUF724)
      0.046   13.7   6.3        1.5    8.9   1.3    2.3  2  FlxA            FlxA-like protein
      0.049   13.6   2.5        1.9    8.5   0.6    2.3  2  Prefoldin_2     Prefoldin subunit
      0.065   13.2   7.5       0.99    9.4   6.7    2.1  2  Laminin_II      Laminin Domain II
      0.068   12.9   5.9       0.16   11.7   5.5    1.6  2  DUF4201         Domain of unknown function (DUF4201)
       0.07   11.1   2.9      0.081   10.8   2.9    1.0  1  V_ATPase_I      V-type ATPase 116kDa subunit family
       0.11   12.9   3.3       0.19   12.1   3.3    1.4  1  Syntaxin_2      Syntaxin-like protein
       0.16   12.5   7.3       0.26   11.8   7.3    1.4  1  APG6_N          Apg6 coiled-coil region
       0.17   12.3   7.4        1.8    9.0   0.5    2.5  2  DASH_Hsk3       DASH complex subunit Hsk3 like
       0.17   12.1   3.7        1.6    9.1   3.5    2.4  2  DUF948          Bacterial protein of unknown function (DUF948
       0.22   11.5   3.5        3.5    7.7   0.7    2.4  2  Ribosomal_L29   Ribosomal L29 protein
       0.23   11.9   1.6       0.43   11.0   0.3    2.1  2  FlaC_arch       Flagella accessory protein C (FlaC)
       0.29   11.4   3.6          3    8.1   0.3    2.3  2  XhlA            Haemolysin XhlA
        0.3   11.4   2.6       0.46   10.9   2.6    1.4  1  YlqD            YlqD protein
       0.48   10.5   6.1      0.084   12.9   1.2    2.1  2  GvpG            Gas vesicle protein G
       0.48   11.2   3.2        0.6   10.9   1.2    2.0  2  DUF3073         Protein of unknown function (DUF3073)
       0.68   10.6   6.5        8.3    7.1   0.4    2.6  2  SlyX            SlyX
        1.2    9.6   8.3        2.9    8.3   8.3    1.7  1  DUF1690         Protein of Unknown function (DUF1690)
        1.2    7.6   6.8        1.3    7.5   6.8    1.1  1  FUSC            Fusaric acid resistance protein family
        1.5    9.1  13.3        2.2    8.6   9.1    2.2  2  DUF4164         Domain of unknown function (DUF4164)
        1.7    9.0  10.1        1.9    8.9   1.9    2.8  2  CLZ             C-terminal leucine zipper domain of cyclic nu
        4.4    7.6  10.6         15    5.9   2.8    2.6  2  ABC_tran_CTD    ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.5     0.015        12      13      43 ..      45      75 ..      26      83 .. 0.74
   2 !  122.7   0.0   9.4e-39     7e-36       2     105 .]      85     198 ..      84     198 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.015
       Spc24 13 lsdleselesleselaelkeeleeleeesee 43
                ++++e++l++l+ +l+ l ++ +el  + ++
  CCE31492.1 45 MREVETSLKKLSRQLNTLTSQHAELTASTSS 75
                4567788888888888888888887776665 PP

  == domain 2  score: 122.7 bits;  conditional E-value: 9.4e-39
       Spc24   2 ldnekfriakelsdleselesleselaelkeeleeleeesee.....keser...vedetllklklYrsLGielekd.....vnkvlirnkekgdvnvl 87 
                 ld++kfr+ak++sd+e+e+e+l ++ a+l ++l+el+++++e     +   r   v+de ll+lk+YrsLGi++e+d     ++++++rn+ kgdv+v+
  CCE31492.1  85 LDTRKFRTAKAASDAEMEAERLAQQAADLTARLQELDMQGVEgdaaaR---RrdvVDDEILLRLKVYRSLGIDIERDgkdgeWTRAVVRNDGKGDVHVV 180
                 89****************************************864333...156699****************************************** PP

       Spc24  88 nlddklseffianyiWdk 105
                 n+d+k+s++f+any+W++
  CCE31492.1 181 NMDKKFSRYFYANYFWQT 198
                 ****************95 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   5.5   2.3e-05     0.017      60     132 ..      44     118 ..      16     126 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.3e-05
  CENP-F_leu_zip  60 eieelaeelreleldLvalrsekeeLekelq..kkqervseLeslnsslenlleekEqekvqmkeeskaaveeLq 132
                      ++e +++l++l+ +L++l+s+  eL+ +    +  +++ +L++++  + +  +++E+e  ++ +++      Lq
      CCE31492.1  44 RMREVETSLKKLSRQLNTLTSQHAELTASTSssDHASKIATLDTRKFRTAKAASDAEMEAERLAQQAADLTARLQ 118
                     588999********************98765115679**********************7777766554444333 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   6.4     6e-05     0.045      64     177 ..       5     120 ..       1     126 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6e-05
      DUF724  64 ddsrseleslkeslaeLekhGFdVkalqsrlnkLlslkd.eqtklleerkklekkieeeesekrkleeeid..elekkilelerqlallkekkeaadke 159
                 +d+++ +++++++l +++++ F V  + + l+ L + +d + +++++ +kkl +++ + +s++++l ++ +  +  +ki++l +++ ++ +  ++a+ e
  CCE31492.1   5 EDPAELIHDTMNTL-NIQTDKFAVSRINEALSALQEARDlRMREVETSLKKLSRQLNTLTSQHAELTASTSssDHASKIATLDTRKFRTAKAASDAEME 102
                 68899999999998.58999*****************994556788899*********99999999888773366779*****9999888999999999 PP

      DUF724 160 iarlkseaekleeeledv 177
                   rl ++a++l  +l++ 
  CCE31492.1 103 AERLAQQAADLTARLQEL 120
                 999**9999999998876 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.3     0.002       1.5      16      45 ..      49      78 ..      35      88 .. 0.79
   2 ?    7.6   0.3    0.0049       3.7      11      39 ..      95     123 ..      86     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.002
        FlxA 16 asqiasLqkQiknlqkqLkelsesdeltke 45
                ++ +++L +Q+++l+ q  el++s++ ++ 
  CCE31492.1 49 ETSLKKLSRQLNTLTSQHAELTASTSSSDH 78
                67889*******************544443 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0049
        FlxA  11 sssgsasqiasLqkQiknlqkqLkelses 39 
                   s+ + + ++L +Q ++l+  L+el  +
  CCE31492.1  95 AASDAEMEAERLAQQAADLTARLQELDMQ 123
                 45566677889999999999999999876 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.6    0.0025       1.9      60     102 ..      27      69 ..      24      73 .. 0.86
   2 ?    5.0   0.1     0.032        24       9      25 ..     105     121 ..      80     152 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0025
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
  Prefoldin_2  60 keevkeeLeerketlekeiktlekqleklekeleelkeelqkk 102
                  +  ++e L + +e  + +++++e +l+kl ++l+ l +++ ++
   CCE31492.1  27 VSRINEALSALQEARDLRMREVETSLKKLSRQLNTLTSQHAEL 69 
                  567889999999999*******************999998876 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.032
                  HHHHHHHHHHHHHHHHH CS
  Prefoldin_2   9 qlqqqlqqlaqqikqle 25 
                  +l qq  +l + +++l+
   CCE31492.1 105 RLAQQAADLTARLQELD 121
                  33333333333333333 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   2.3    0.0095       7.1      41      84 ..      28      75 ..       4      85 .. 0.59
   2 ?    9.4   6.7    0.0013      0.99       6      84 ..      46     126 ..      26     141 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0095
                XXXXXXXXXXXXX....XXXXXXXXXXX--TTTTTGGGHHHHHHHHHH CS
  Laminin_II 41 eetnekvkdanka....irdArrsvkkLeklapqLldklkelkqleea 84
                 ++ne ++++++a    +r++++s kkL ++++ L ++  el    + 
  CCE31492.1 28 SRINEALSALQEArdlrMREVETSLKKLSRQLNTLTSQHAELTASTSS 75
                355555554444311125677888888888888888886666555444 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH CS
  Laminin_II   6 aeanetakevleqlaplsqnlentkeklseinrsveetnekvk..dankairdArrsvkkLeklapqLldklkelkqleea 84 
                 +e++ ++k+  +ql+ l  +  ++ ++ s+ +   +  + + +     ka  dA+ +   L ++a +L ++l+el+++ ++
  CCE31492.1  46 REVETSLKKLSRQLNTLTSQHAELTASTSSSDHASKIATLDTRkfRTAKAASDAEMEAERLAQQAADLTARLQELDMQGVE 126
                 566666777777777777777766666665544422222222245788999*************************99876 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.1     0.032        24     101     138 ..      32      69 ..      11      73 .. 0.60
   2 ?   11.7   5.5   0.00021      0.16      51     146 ..      31     128 ..      26     140 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.032
     DUF4201 101 kekeerlaklrkelykvklerdklrkqneklkqqggll 138
                 + + + +++ + ++ +v++  +kl +q + l +q+++l
  CCE31492.1  32 EALSALQEARDLRMREVETSLKKLSRQLNTLTSQHAEL 69 
                 44444455555566666666666666666666666655 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00021
     DUF4201  51 nqalnkkIeernkeLkrlkkkttktvhalthlkeklh..mleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrvPaLlkD 146
                 n+al+   e r+  + +   + +k + +l++l       + ++ +s++ +++ ++++r+ +  k  + +++e ++l +q ++l +++++l++  +  D
  CCE31492.1  31 NEALSALQEARDLRMREVETSLKKLSRQLNTLTSQHAelTASTSSSDHASKIATLDTRKFRTAKAASDAEMEAERLAQQAADLTARLQELDMQGVEGD 128
                 677777778899999999999999999999998887722455678999******************************************99877665 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.9   0.00011     0.081      39     136 ..      15     110 ..       7     147 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
  V_ATPase_I  39 lrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeeeeeeeeseeeeeeke 136
                 ++ l+ + +k++   i+e    + l+++++ ++ e+e++l+kl ++l++l++++ +l++++++  +++++ +  ++ ++++++ +++e + e+ ++++
  CCE31492.1  15 MNTLNIQTDKFAVSRINEA--LSALQEARDLRMREVETSLKKLSRQLNTLTSQHAELTASTSSSDHASKIATLDTRKFRTAKAASDAEMEAERLAQQA 110
                 4555555555544444444..58889999999***************************999999999999877777765533333322222222222 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.3   0.00025      0.19       4      89 ..      19     120 ..      17     127 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00025
  Syntaxin_2   4 nlqkinsnvstleklvkqLgtkkd.........teelreklhelieeinelikkt..nellkklsqldnsssds..............qqklqkekLkk 77 
                 n+q+    vs +++ ++ L+ ++d          ++l ++l++l+++  el   t  +++ +k+                           +++e+L++
  CCE31492.1  19 NIQTDKFAVSRINEALSALQEARDlrmrevetsLKKLSRQLNTLTSQHAELTASTssSDHASKI---------AtldtrkfrtakaasDAEMEAERLAQ 108
                 677777789999999999***9999944444444555555555555555555444334444444.........34444444557788877889999999 PP

  Syntaxin_2  78 dfkealqeFqki 89 
                 +  ++  ++q++
  CCE31492.1 109 QAADLTARLQEL 120
                 888888888876 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   7.3   0.00034      0.26      10      97 ..      37     123 ..      20     132 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00034
      APG6_N  10 LleeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeee 97 
                 L e  d +++++e   +++++ l++l++++ e +   ++  +   ++++l+  + +  +   ++e e e+l+++ a+l++ l++l+ +
  CCE31492.1  37 LQEARDLRMREVETSLKKLSRQLNTLTSQHAELT-ASTSSSDHASKIATLDTRKFRTAKAASDAEMEAERLAQQAADLTARLQELDMQ 123
                 5566678888999999999999999998877766.46666677777888888888888888888888888888888888888888765 PP

>> DASH_Hsk3  DASH complex subunit Hsk3 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.5    0.0024       1.8       1      23 [.      56      78 ..      56      84 .. 0.85
   2 ?    6.1   1.4     0.019        14       6      22 ..     105     121 ..     102     123 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0024
   DASH_Hsk3  1 qRqyshLasqLaqLqaNLadtee 23
                +Rq++ L sq a+L+a ++  ++
  CCE31492.1 56 SRQLNTLTSQHAELTASTSSSDH 78
                6***************9987665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.019
   DASH_Hsk3   6 hLasqLaqLqaNLadte 22 
                 +La+q a L+a+L++++
  CCE31492.1 105 RLAQQAADLTARLQELD 121
                 7*************986 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.5    0.0021       1.6      27      72 ..      44      87 ..       9     121 .. 0.90
   2 ?    1.3   0.1      0.54     4e+02      32      59 ..      93     120 ..      90     132 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0021
      DUF948 27 tldeaaatieelekqvdpilkevedllakvnelledvneklekvdp 72
                 ++e+++++++l +q++ ++ + ++l+a +    +d  +k++++d+
  CCE31492.1 44 RMREVETSLKKLSRQLNTLTSQHAELTASTSS--SDHASKIATLDT 87
                5899************************9999..999999999996 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.54
      DUF948  32 aatieelekqvdpilkevedllakvnel 59 
                 a++  + e +++ + ++++dl+a  +el
  CCE31492.1  93 AKAASDAEMEAERLAQQAADLTARLQEL 120
                 5666777778888888888888887774 PP

>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.7    0.0046       3.5       2      31 ..      39      73 ..      38      89 .. 0.81
   2 ?    4.2   0.1     0.055        41       5      35 ..     100     128 ..      99     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0046
                   HHHHS-HHHHHHHHHHHHHHHHHHHHHHH.....H CS
  Ribosomal_L29  2 elrelsdeeLkeklkelkkeLfnLrfqka.....t 31
                   e r+l   e +  lk+l ++L +L  q+a     t
     CCE31492.1 39 EARDLRMREVETSLKKLSRQLNTLTSQHAeltasT 73
                   889999**********************9654443 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.055
                    HS-HHHHHHHHHHHHHHHHHHHHHHHHTSSS CS
  Ribosomal_L29   5 elsdeeLkeklkelkkeLfnLrfqkatgqle 35 
                    e+  e L ++ ++l + L +L +q + g  +
     CCE31492.1 100 EMEAERLAQQAADLTARLQELDMQGVEG--D 128
                    789999*****************98877..4 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   0.00058      0.43       1      29 [.      44      72 ..      44      75 .. 0.92
   2 ?   -1.9   0.0       6.1   4.6e+03      12      34 ..      99     121 ..      94     123 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00058
   FlaC_arch  1 ridelEnklsklsteletvkkeneelsks 29
                r+ e+E+ l+kls +l+t+ ++  el  s
  CCE31492.1 44 RMREVETSLKKLSRQLNTLTSQHAELTAS 72
                899*******************9998765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 6.1
   FlaC_arch  12 lsteletvkkeneelsksveelk 34 
                  ++e e + ++  +l   ++el+
  CCE31492.1  99 AEMEAERLAQQAADLTARLQELD 121
                 45666666666666666666655 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.3     0.004         3       6      47 ..      27      65 ..      24      67 .. 0.90
   2 ?    4.1   0.3     0.071        53       5      45 ..      81     121 ..      78     123 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.004
        XhlA  6 lerietkldnlee.rvdkleekaaeaeekiknleedlkklesn 47
                + ri++ l  l+e r    +++++e+e+++k l  +l+ l+s+
  CCE31492.1 27 VSRINEALSALQEaR----DLRMREVETSLKKLSRQLNTLTSQ 65
                678999999999987....89*******************985 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.071
        XhlA   5 rlerietkldnleervdkleekaaeaeekiknleedlkkle 45 
                 ++++++t+     +  ++ e+ a++  +++  l+ +l +l 
  CCE31492.1  81 KIATLDTRKFRTAKAASDAEMEAERLAQQAADLTARLQELD 121
                 667777777777777889*******************9985 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.6   0.00061      0.46      22      87 ..      45     121 ..      14     130 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00061
        YlqD  22 qqqlqaqieqldkelqqLefqakrlikeikkqsaq...........qieeiqeqvekekserlekkkqllqqleqvq 87 
                 ++++++++++l ++l+ L+ q  +l +++++ + +           + +++ + +e e +++ ++ ++l+++l++++
  CCE31492.1  45 MREVETSLKKLSRQLNTLTSQHAELTASTSSSDHAskiatldtrkfRTAKAASDAEMEAERLAQQAADLTARLQELD 121
                 678888999999999999999999988888766668999999*999999999999****************999986 PP

>> GvpG  Gas vesicle protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       2.2   1.6e+03      31      45 ..      46      60 ..      27      67 .. 0.67
   2 ?   12.9   1.2   0.00011     0.084      20      68 ..     100     148 ..      95     161 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2.2
        GvpG 31 enlrkeLaaLqqeLd 45
                +++++ L +L ++L+
  CCE31492.1 46 REVETSLKKLSRQLN 60
                456666777777665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00011
        GvpG  20 qeraeeqlddqenlrkeLaaLqqeLdaGeIdeeeFdrrEeelLdrLeal 68 
                 + +ae+ +++ ++l ++L +L+ +  +G+      d   +e+L+rL+  
  CCE31492.1 100 EMEAERLAQQAADLTARLQELDMQGVEGDAAARRRDVVDDEILLRLKVY 148
                 5689999***************************************854 PP

>> DUF3073  Protein of unknown function (DUF3073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.2   0.00081       0.6      13      51 ..      40      78 ..      37     104 .. 0.81
   2 ?   -0.9   0.0       3.9   2.9e+03      24      51 ..     112     139 ..     106     164 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00081
     DUF3073 13 AReLKYlspetDydaLerELsgkseesdsaddeeseddd 51
                AR+L    +et +++L r L++ ++++ + +++ s++d+
  CCE31492.1 40 ARDLRMREVETSLKKLSRQLNTLTSQHAELTASTSSSDH 78
                9*******************9998888877777776665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 3.9
     DUF3073  24 DydaLerELsgkseesdsaddeeseddd 51 
                 D++a  +EL  +  e d a ++++  dd
  CCE31492.1 112 DLTARLQELDMQGVEGDAAARRRDVVDD 139
                 6666667787766666665555555444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.4     0.011       8.3      29      58 ..      48      77 ..      26      83 .. 0.84
   2 ?    5.9   0.9     0.026        20      30      59 ..     100     129 ..      93     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.011
                HHHHHHHHHHHHHHHHHT-XXXXXXXXXXX CS
        SlyX 29 qqqqidrlqrqlrllaerlkeleessgase 58
                 +  +++l rql+ l+ + +el +s+++s+
  CCE31492.1 48 VETSLKKLSRQLNTLTSQHAELTASTSSSD 77
                566789999999999999999999988665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.026
                 HHHHHHHHHHHHHHHHT-XXXXXXXXXXXX CS
        SlyX  30 qqqidrlqrqlrllaerlkeleessgasea 59 
                 + + +rl +q + l+ rl+el+ +  +++a
  CCE31492.1 100 EMEAERLAQQAADLTARLQELDMQGVEGDA 129
                 56889****************999876655 PP

>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   8.3    0.0038       2.9      30     104 ..      21     103 ..       9     138 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0038
     DUF1690  30 alekliqerVaeeLkkLraeeeetlkkfeeklekellkde......adakdelsskalnekieeLrkkleefkkkeeekl..p 104
                 +++k+  +r++e L+ L+++    ++++e+ l+k + + +      a+ + ++ss+  ++ki++L ++  ++ k  ++ +   
  CCE31492.1  21 QTDKFAVSRINEALSALQEARDLRMREVETSLKKLSRQLNtltsqhAELTASTSSSDHASKIATLDTRKFRTAKAASDAEmeA 103
                 67888999999999999887777777777777765555446777766778888899999999999887666555555443222 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.8    0.0017       1.3     216     319 ..      32     122 ..       9     171 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0017
        FUSC 216 araralrrlls.rmlallallsslarllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlralrraleadadtaalllarlaellae 313
                 ++  al++++  rm ++ ++l +l r+l++l +++a+               +a+ ++++++ ++a+l++r  ++ +a++++   a++l++++a+l a+
  CCE31492.1  32 EALSALQEARDlRMREVETSLKKLSRQLNTLTSQHAEL--------------TASTSSSDHASKIATLDTRKFRTAKAASDAEMEAERLAQQAADLTAR 116
                 22233332222123333333333333333333333333..............44455555555555555555555555555555555555555555555 PP

        FUSC 314 laqlla 319
                 l++l  
  CCE31492.1 117 LQELDM 122
                 554432 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.2     0.018        14       6      51 ..      23      69 ..      19      72 .. 0.81
   2 ?    8.6   9.1    0.0029       2.2       4      79 ..      46     120 ..      43     123 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.018
     DUF4164  6 leaaltrLeaaldsLEkavdrrleaerkr.deleaeiealgedrsRL 51
                 + a +r+++al +L +a d r+++ ++  ++l ++++ l++  + L
  CCE31492.1 23 DKFAVSRINEALSALQEARDLRMREVETSlKKLSRQLNTLTSQHAEL 69
                566899*************9887776666599999999999887766 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0029
     DUF4164   4 keleaaltrLeaaldsLEkavdrrleaerkrdeleaeiealgedrsRLaeeLdqaearaarleevnrEvsrrLkaa 79 
                  e+e  l++L++ l++L++  ++ l+a  + ++ +++i+ l+  + R a++  +ae++a+rl++ ++++  rL+ +
  CCE31492.1  46 REVETSLKKLSRQLNTLTSQ-HAELTASTSSSDHASKIATLDTRKFRTAKAASDAEMEAERLAQQAADLTARLQEL 120
                 57889999999999999877.5668888889999***************************************976 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.9    0.0025       1.9      25      58 ..      44      77 ..      30      88 .. 0.84
   2 ?    4.3   1.3     0.072        54      15      50 ..      85     120 ..      80     131 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0025
         CLZ 25 eqkeleekverLessLeaLqtrlarLlaeyessq 58
                  +e+e+ +++L  +L++L+ + a L a  +ss+
  CCE31492.1 44 RMREVETSLKKLSRQLNTLTSQHAELTASTSSSD 77
                56799**********************9999986 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.072
         CLZ  15 LDeeaakagaeqkeleekverLessLeaLqtrlarL 50 
                 LD+++    + + ++e  +erL ++   L+ rl+ L
  CCE31492.1  85 LDTRKFRTAKAASDAEMEAERLAQQAADLTARLQEL 120
                 677744444677889999999999999999998877 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.1     0.025        19      39      67 ..      41      69 ..       9      72 .. 0.64
   2 ?    5.9   2.8      0.02        15      16      54 ..      81     121 ..      79     124 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.025
  ABC_tran_CTD 39 dpeklaelsaeleeleaeLeelyerWeeL 67
                  ++ ++ e+ + l++l  +L++l+++  eL
    CCE31492.1 41 RDLRMREVETSLKKLSRQLNTLTSQHAEL 69
                  33355555555666666666666555555 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.02
  ABC_tran_CTD  16 eIeaLEeeiaeleaeladpelysdp..eklaelsaeleele 54 
                   +I+ L++++    ++ +d+e+ +    ++ a+l+a+l+el+
    CCE31492.1  81 KIATLDTRKFRTAKAASDAEMEAERlaQQAADLTARLQELD 121
                   79999999999999999999775555678888999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1939  (0.108149); expected 358.6 (0.02)
Passed bias filter:                      831  (0.0463495); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 1381.78
//
Query:       CCE31493.1  [L=1571]
Description: related to protein kinase homolog VPS15 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-22   80.2   0.0    2.4e-22   79.6   0.0    1.2  1  Pkinase      Protein kinase domain
    1.3e-06   29.1  21.5    0.00023   21.9   0.4    5.5  5  WD40         WD domain, G-beta repeat
    4.2e-06   26.2   0.0    6.3e-06   25.7   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0002   21.3   4.6         12    6.5   0.1    6.5  6  HEAT         HEAT repeat
  ------ inclusion threshold ------
      0.018   14.3   0.0      0.037   13.3   0.0    1.5  1  Kinase-like  Kinase-like
       0.12   12.7   0.0        2.2    8.6   0.0    2.8  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0     8e-26   2.4e-22       5     260 ..      29     287 ..      25     288 .. 0.82

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 8e-26
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkke...kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeea 100
                 + +G+  f k ++++  +++  v vK++ k  a+ + +   kk+l+E k+l+ +  pn + + +++e++++ ylv ++    +l d+l+++  l++ e 
  CCE31493.1  29 RSIGNARFMKSIRGR--HEHGVVLVKVLLKPYAEANLDeykKKLLKERKLLADV--PNALPFQRIIETETNGYLVRQFQY-SSLYDRLSTRPFLEDIEK 122
                 667777777777776..5788899999988877776666779********9865..9*******************9988.67******99999999** PP

                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.........BCTTTSCGGGS-HHHH........TTSCBSHHHHHHH CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.........ltsfvgtseYlAPEvl........keneyskkvDvWs 182
                 k +a q+l +l+ +Hs+ + H D+K +N+L+ + + l +tDF  a +     +         +++      Y+APE           + +++ ++D++s
  CCE31493.1 123 KWLAFQLLCALRDCHSRDVYHGDIKAQNVLVTSWNWLYLTDFSSAYKPILLPDdnpgdfsyfFDTSGRRTCYIAPERFyasgeeprPKAKMTWAMDIFS 221
                 ********************************9999*********87655444557998887666667778*******99887663336679******* PP

                 HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-.HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 183 lGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseis.eeakdllkkllkkdpkkRltaeellq 260
                 +G+++++++ ++++fs     + ++ +           ge++  + + s is + ++d++  +++ dp+kR++a++ l+
  CCE31493.1 222 AGCVIAQMFLESEIFS---LAQLYKYKR----------GEYDPVVTHLSVISdKGVRDMIAHMIQLDPEKRYSADQYLE 287
                 ****************...222222222..........2456677777888615689*****************99875 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.4   7.6e-08   0.00023       3      38 .]    1112    1148 ..    1110    1148 .. 0.92
   2 !    7.7   0.7    0.0024       7.1      12      36 ..    1169    1195 ..    1159    1197 .. 0.77
   3 ?    3.1   0.3     0.067     2e+02      10      38 .]    1273    1301 ..    1263    1301 .. 0.81
   4 ?   -2.9   0.2       5.4   1.6e+04       3      38 .]    1335    1349 ..    1331    1350 .. 0.44
   5 !    8.9   0.2   0.00098       2.9      23      38 .]    1439    1454 ..    1423    1454 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 7.6e-08
                  EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                  ++ t+  H ++++ +  spd+ ++++G+ D  vr+Wd
  CCE31493.1 1112 LVATFGEHkGPINRVVASPDHLFFITGGHDSCVRVWD 1148
                  688999**777****************99*******9 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0024
                  S..EEEEEEETTSSEEEEEETTSEEEE CS
        WD40   12 s..vtslafspdgawlasGsdDgtvri 36  
                  +  v +l+f  +++ ++s+  Dg+v+i
  CCE31493.1 1169 GahVLALCFVENSHCFVSCASDGSVHI 1195
                  234*****9999999998855****98 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.067
                  SSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   10 HssvtslafspdgawlasGsdDgtvriWd 38  
                  H+  t+++ ++  +wl+ G+  g v +Wd
  CCE31493.1 1273 HGAPTCFCIDRKRNWLCVGTTHGVVDLWD 1301
                  44479***********9998788888887 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 5.4
                  EEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    3 clrtltGHssvtslafspdgawlasGsdDgtvriWd 38  
                  c+   tGH                     g v +Wd
  CCE31493.1 1335 CIAGGTGH---------------------GEVTVWD 1349
                  33344555.....................4444443 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.00098
                  SEEEEEETTSEEEEEE CS
        WD40   23 awlasGsdDgtvriWd 38  
                  a++++G+ D+++r+Wd
  CCE31493.1 1439 AFIVTGGSDKKLRFWD 1454
                  5799*988*******9 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.1e-09   6.3e-06       2     150 ..      26     167 ..      25     281 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2.1e-09
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                  ++++++G+ +f k ++g+ +  +    vkV +K   e + +e k++ll+e k++ ++  pn + +  ++  e + ++v ++ ++ +L + L ++  + 
   CCE31493.1  26 QYERSIGNARFMKSIRGRHE--HGVVLVKVLLKPYAEANLDEYKKKLLKERKLLADV--PNALPFQRIIETETNGYLVRQF-QYSSLYDRLSTR--PF 116
                  67889999999999999999..888888999999989888999**********9875..8999999999999999999987.899*******98..99 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLa 150
                  l+  ++  +a+q+ ++++  +s+++ H d+ a+NvL+++ +   ++Df  a
   CCE31493.1 117 LEDIEKKWLAFQLLCALRDCHSRDVYHGDIKAQNVLVTSWNWLYLTDFSSA 167
                  99999999****************************************754 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.11   3.3e+02       1      29 [.     439     468 ..     439     470 .. 0.91
   2 ?    4.1   0.1     0.024        71      12      29 ..     500     517 ..     485     519 .. 0.75
   3 ?    0.2   0.0      0.41   1.2e+03       8      28 ..     574     594 ..     571     596 .. 0.83
   4 ?    1.6   0.0      0.15   4.4e+02       1      30 [.     605     634 ..     605     635 .. 0.85
   5 !    6.5   0.1    0.0041        12       2      28 ..     645     671 ..     644     673 .. 0.95
   6 ?    0.9   0.0      0.25   7.4e+02      10      28 ..     693     711 ..     687     714 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.11
                 HHHHHHHHH.T-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkll.sDpspeVReaAakaLgalae 29 
                 +lP l++ll + ++  V  aA++++++l++
  CCE31493.1 439 VLPYLMTLLrREEADVVIVAAIRTITQLLQ 468
                 69*******99999999**********987 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.024
                 SSHHHHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLgalae 29 
                  s+ VR++ a ++g la+
  CCE31493.1 500 ASSLVRATYASCIGSLAS 517
                 6889************98 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.41
                 HHT-SSHHHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLgala 28 
                 l +D++  VR+a + ++ +l+
  CCE31493.1 574 LVEDSDVYVRRAFLASVPELC 594
                 559*********998888777 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.15
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 ll +l + l+D ++   +a + +++ +a +
  CCE31493.1 605 LLTHLNTYLNDRDWTLKCAFFDSIVGIATF 634
                 56677889***********99999999865 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.0041
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 lPl+l++l D +  V +a++ +L++la
  CCE31493.1 645 LPLMLQALADGEETVVQAVLHSLAHLA 671
                 9**********************9997 PP

  == domain 6  score: 0.9 bits;  conditional E-value: 0.25
                 T-SSHHHHHHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAakaLgala 28 
                 ++p+  +ReaA + +++ +
  CCE31493.1 693 MHPNIWIREAATEFIAQAS 711
                 6899*******99888765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.037     125     244 ..     101     230 ..      31     279 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
  Kinase-like 125 eilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvr.....agtkvvlseve...........kg 206
                  +   + l+ r +t+  le+i ++ l  ql+      +++ + hg+++++n+l      l+l++f++ ++     + + +                   
   CCE31493.1 101 QFQYSSLYDRLSTRPFLEDIEKKWLAFQLLCALRDCHSRDVYHGDIKAQNVLVTSWNWLYLTDFSSAYKpillpDDNPG-----DfsyffdtsgrrTC 193
                  4455778899999999*************************************************98872222233333.....13344466677666 PP

  Kinase-like 207 faPpEllgsrggytrknktkmthkldaWqlGlviyriw 244
                  +  pE + + g  +++ k+kmt+++d    G vi  + 
   CCE31493.1 194 YIAPERFYASGE-EPRPKAKMTWAMDIFSAGCVIAQMF 230
                  777776666566.7888999999999999999998775 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00074       2.2      27      69 ..    1158    1200 ..    1142    1205 .. 0.79
   2 ?    0.0   0.0      0.35   1.1e+03      10      66 ..    1244    1301 ..    1236    1306 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00074
  ANAPC4_WD40   27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaes 69  
                   +r  ++++++++ +v +L++ ++ + ++   sdg+v+++++ +
   CCE31493.1 1158 HRSRQTHRHADGAHVLALCFVENSHCFVSCASDGSVHIVKVDT 1200
                   333344788999***************************9976 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.35
  ANAPC4_WD40   10 iAlatedgellvfRl.ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlld 66  
                   + lat+++++l   l  + r++tle++ + +  ++++   + + L+v++  g v l d
   CCE31493.1 1244 LVLATNRSRILGIELrTMTRLFTLENPIHHGAPTCFCIDRKRNWLCVGTTHGVVDLWD 1301
                   566666666665554356788888999999999999999*************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.95u 0.27s 00:00:01.22 Elapsed: 00:00:00.48
# Mc/sec: 9861.84
//
Query:       CCE31494.1  [L=409]
Description: uncharacterized protein CPUR_05347 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1160  (0.0646996); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2897.25
//
Query:       CCE31495.1  [L=297]
Description: uncharacterized protein CPUR_05348 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-20   73.5   0.0    3.3e-20   72.6   0.0    1.5  1  Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
       0.13   12.2   0.1       0.54   10.2   0.1    2.1  2  Peroxidase_ext   Fungal peroxidase extension region


Domain annotation for each model (and alignments):
>> Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   3.6e-24   3.3e-20       2      99 ..      45     167 ..      44     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 3.6e-24
                      -TTHHHHHHHHHHTT-GGGGEEEEEEE-T.TS-...EEEEEEE---B-TT................SS-.EEEEEETTSHHHHHHH........ CS
  Pyridox_oxase_2   2 apWrsllesalkknkkkkstefqlaTvdeeegk...PrvRtvvfRgfleekk.e............esdvltfttDvrseKvkqles....... 72 
                      apWr++++s +++    k + f+l++v + + +   Pr+Rtvv+Rg +++   +            esd+ t+ttD+r++Kv+++         
       CCE31495.1  45 APWREAFTSDMES---MKPPNFTLSSVYQVSPStflPRARTVVYRGMWASLVpNsknpatlnaacyESDLPTITTDARMHKVSEMFPastpags 135
                      89**********9...77888888888844444468*************98844899*****************************999***** PP

                      .....H--EEEEEEEETTTTEEEEEEEEEEEE CS
  Pyridox_oxase_2  73 .....snaaveavfylketreQfRisGkafvi 99 
                           +   +eavf+ +e+++Q+R++G++ +i
       CCE31495.1 136 sslsaKGGPIEAVFWAAESNTQWRLRGHVYMI 167
                      ***99999********************9987 PP

>> Peroxidase_ext  Fungal peroxidase extension region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.62   5.6e+03      15      35 ..      26      46 ..      17      54 .. 0.66
   2 ?   10.2   0.1     6e-05      0.54      41      68 ..      91     118 ..      71     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.62
  Peroxidase_ext 15 llGqdrskLidCSdvipvpkp 35
                        ++ +++d S +  ++ p
      CCE31495.1 26 SRATNTTTITDTSSMTVAAAP 46
                    445677777777776655555 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 6e-05
  Peroxidase_ext  41 atfPagttpkdleltCateaFPtLtvdp 68 
                     + +P +++p+ l+ +C  + +Pt+t+d+
      CCE31495.1  91 SLVPNSKNPATLNAACYESDLPTITTDA 118
                     789***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2288.75
//
Query:       CCE31496.1  [L=632]
Description: uncharacterized protein CPUR_05349 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-21   76.5   0.3    2.8e-21   75.8   0.1    1.4  2  Fungal_trans  Fungal specific transcription factor domain
    2.2e-08   34.0   9.4    3.7e-08   33.3   9.4    1.3  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.1   3.1e-25   2.8e-21       3     183 ..     237     413 ..     235     435 .. 0.88
   2 ?   -3.7   0.0      0.52   4.7e+03     162     204 ..     454     497 ..     453     515 .. 0.70

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 3.1e-25
  Fungal_trans   3 rffsnfhpqfpilhkpsflpkt......ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwi 93 
                   r+f+ + p +p++h+++f+ ++      + e++++   ++ +l++ ilalG +f+ ++   + +++ +      a+ ++ +  +    + ++ sl +
    CCE31496.1 237 RYFECVDPIYPMIHRQTFYADYehfwrvRAEERHEMEASFIALIFIILALGTQFVTTAPIDERKQTAEF--YASASNQALRVSS----FMSTASLRS 327
                   8************************************************************98888883..4555555555555....556666*** PP

  Fungal_trans  94 lqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinl 183
                   +q+ +l+ +++++ +  +  + + g+ +r a+ +gLhr+p+ v ++      ++e+++r ++w a+ + D+++ + l  pp    +++++
    CCE31496.1 328 IQAMVLMTYFLINDDHASDGWAFAGILIRQAYAMGLHRDPNVVTPH----ANPFEKQQRLKVWQAVLMQDTFLTVLLSLPPSATHTDVSV 413
                   ********************************************65....99999**************************656665555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.52
  Fungal_trans 162 lDktialklGrpp.llddsqinlp.LPcddddlwesddaseetlv 204
                   lD+ i++ +++ + l  d+    + +P+ ++  w++d+ +++   
    CCE31496.1 454 LDVSICSTVRHKSkLVADFRAVYRsFPDVFR-SWDADSLTAVAST 497
                   7888888888888866666555555777777.7777776666555 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   9.4   4.2e-12   3.7e-08       2      33 ..      93     124 ..      92     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 4.2e-12
                 S-HHHHHCT---STSSSS-HHHHHCTHHHCCC CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfy 33 
                 +C++C  +K+KCd+++P+C  C+k+++eC++ 
  CCE31496.1  93 SCQECVERKTKCDRGRPHCLACIKRQTECQYA 124
                 8*****************************54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4610.65
//
Query:       CCE31497.1  [L=455]
Description: related to Cut9 interacting protein scn1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-30  104.2   0.0    1.8e-29  102.9   0.0    1.6  1  TatD_DNase  TatD related DNase


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   9.8e-34   1.8e-29       2     253 ..      43     452 ..      42     454 .. 0.80

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 9.8e-34
                 EEEE-TTSCCC......TTTHHHHHHHHHHTTEEEEEEE-SSG.............................GGHH.HHHHHHTT.TTTEEEEE---GG CS
  TatD_DNase   2 DaHcHldskef......eedreeileraeeagvaavvvvgtss.............................kdsk.avlelakkypnkvyavlGiHPn 64 
                 DaHcH++++ +      ++ r ++l+ ++ +++ +++v ++ s                              +s+    ++++  + +v++++G+HP+
  CCE31497.1  43 DAHCHPTDT-MesiatfDTMRTSALAIMATRSQDQLLVAQVASahgvsdgaslrgrrcqetchqkddkhaqrDTSReGHAQVVQ-RKCQVIPSFGWHPW 139
                 ********2.21122222224444444444444444433333377777888888888888888888877765333323444444.4666********** PP

                 GGGC............................................C.CCHH...........HHHHHH.HHCCCTSEEEEEEEEEET-CCCCCGH. CS
  TatD_DNase  65 evde............................................asedll...........eelkel.anvkhskvvaiGeiGLDyysreestk. 106
                  +++                                            +++d++            ++ +  a ++ +++++iGeiG+D+  r ++++ 
  CCE31497.1 140 FSYQiyddtapvptyqpprntgtededaaallsakrahyqsvltptpqEDDDFFiaslpipspisSFVSSTrATLESYPIALIGEIGIDKAFRLPGNWd 238
                 **********************************************9734444466666677777889999999****************666666666 PP

                 ............................HHHHHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHH................................... CS
  TatD_DNase 107 ............................eaqeevFeeqlrlAkelklplviHlrkaeedlleil................................... 142
                                             ++q++++++qlrlA ++++p+++H ++a+  l++ +                                   
  CCE31497.1 239 sslassrnksltpggregrrlspykvqmQHQQMILRAQLRLAGQVGRPVSVHGVQAHGVLYDTVsscwkghekhvpsrkerrmkapgaeddhdddadgd 337
                 777777788888**********************************************999999999*****************************999 PP

                 .....HHCGGCCS...EEEETT--S-HHHHHHHHHT....TEEEEE-GGGGTTT...THHHHHHHHHS-GGGEEE---TTSSEECCCTTSE--GGGHHH CS
  TatD_DNase 143 .....keaaeaka...kvvlHsfsgsaeeakkflkl....gyyislsglltfkn...akelrelvkavpldrlLiETDaPyltpkpyrgkrnepanvay 226
                      +    ak    +++lHs+sgs+e +k++l      ++++s+s +++        ++ ++++a+p d+lL+E+D    +       +  +a+++ 
  CCE31497.1 338 ndarvS----AKPyppRICLHSYSGSVEGLKQWLRPdipaKMFFSFSTAVNLGTeatRAKFGDVIRAIPADKLLVESDL---HM----AGEDLDAALED 425
                 664322....222457******************5567999999999999886643444599999*************4...33....3578899**** PP

                 HHHHHHHHHTS-HHHHHHHHHHHHHHH CS
  TatD_DNase 227 vveklaelkaltleelaeitaeNakrl 253
                 +++ ++e k+++lee  +++ +N++ +
  CCE31497.1 426 MYRRVCEEKGWSLEEGVRTIGNNFEHF 452
                 **********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3658.37
//
Query:       CCE31498.1  [L=259]
Description: uncharacterized protein CPUR_05351 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   11.0   0.1       0.26   10.5   0.1    1.1  1  S_4TM     SMODS-associating 4TM effector domain


Domain annotation for each model (and alignments):
>> S_4TM  SMODS-associating 4TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   1.5e-05      0.26     166     266 ..       8     108 ..       4     114 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 1.5e-05
       S_4TM 166 yaklllfalvlwillvlvvgliknlslsdlllsvivpllpllllalkeyreqresakelerlkeeiesllndaasgkleeeelkeelrklQdeiyqhRk 264
                 ya ++ f++++   l l++g+++ l++  l+  vi+ +l + l ++ +  +   s ++  +l++++    ++ ++ +++e+    +  + Q+ ++q+R+
  CCE31498.1   8 YAFVIPFLFFVTAPLALLAGITTTLTFGLLMSRVIIMSLDVALSFIPQSLARFTSHRRYIHLQDQMLPATSTNTTPGSNEDSARASFVDQQQPLLQSRR 106
                 777888999999999****************************************************9999999999999999**************88 PP

       S_4TM 265 ss 266
                 + 
  CCE31498.1 107 RR 108
                 75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2099.21
//
Query:       CCE31499.1  [L=243]
Description: related to U2 snRNP protein A` [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-51  174.9   0.0    1.5e-51  174.4   0.0    1.2  1  LRR_9     Leucine-rich repeat
    7.2e-08   32.1   1.6      2e-07   30.7   0.6    2.2  2  LRR_8     Leucine rich repeat
    1.3e-05   25.4   3.0    0.00012   22.4   1.1    2.9  3  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.063   12.7   1.2        0.1   12.0   1.2    1.2  1  DUF4349   Domain of unknown function (DUF4349)


Domain annotation for each model (and alignments):
>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.4   0.0   3.3e-55   1.5e-51       3     166 ..       2     164 ..       1     173 [. 0.97

  Alignments for each domain:
  == domain 1  score: 174.4 bits;  conditional E-value: 3.3e-55
       LRR_9   3 kltaelikqsaqyinairereldlrgykipvienlGatldqfdtidlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelq 101
                 +ltaeli+++ +y+n+++ereldlrg++ip ienlG +    d+id++dndi+ l +fPl  r+ tlll+ nri  i++ l +++Pnl++lvl++nel 
  CCE31499.1   2 RLTAELIHDALSYLNPLKERELDLRGHRIPAIENLGVA-GPHDAIDFTDNDIQILGNFPLSPRITTLLLARNRIASIQPTLPNAVPNLTNLVLASNELS 99 
                 8***********************************87.568********************************************************* PP

       LRR_9 102 eladldPlaslkklellsllknpvtnkkeyrlyviyklkqlrlldfrkvklkereeaeklfkskk 166
                 eladld l  + +l+ l l++npv++k++yr +v+++ +++r ld+ kvk  ere  ++lf +++
  CCE31499.1 100 ELADLDILRGFGRLTHLVLMDNPVAKKEHYRYWVLWRCQSVRFLDYVKVKDVERERGRELFGTEE 164
                 *************************************************************8875 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.6   4.4e-11     2e-07       1      60 [.      62     122 ..      62     123 .. 0.94
   2 ?   -1.1   0.0      0.36   1.6e+03      24      35 ..     190     201 ..     174     219 .. 0.58

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 4.4e-11
                 TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---G.GGGGGGTT--S-.EEE--SS- CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNlltt.lspgafsgLpsLrsLdLsgNr 60 
                 p+ t+L L +Nr+ s++++  + ++nL+ L L +N+l+   + + ++g+ +L++L L +N+
  CCE31499.1  62 PRITTLLLARNRIASIQPTLPNAVPNLTNLVLASNELSElADLDILRGFGRLTHLVLMDNP 122
                 6889***********************************557799*************997 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.36
                 -TT--EEE--SS CS
       LRR_8  24 lsnLkvLdLsnN 35 
                  s+L  ++L+  
  CCE31499.1 190 TSKLSRIKLTGD 201
                 344444444444 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.4   1.1e+04      27      33 ..      22      28 ..      21      36 .. 0.45
   2 !   22.4   1.1   2.6e-08   0.00012       1      40 [.      62     102 ..      62     109 .. 0.83
   3 ?    0.7   0.0      0.17   7.8e+02       2      13 ..     112     123 ..     111     126 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
                EEE-.-S CS
       LRR_4 27 eLdLsgN 33
                eLdL g 
  CCE31499.1 22 ELDLRGH 28
                4555333 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 2.6e-08
                 SS--EEE--SS---E-S-..HHH-TT--EEE-.-S-----GG CS
       LRR_4   1 pnLevLdLsnNqltdipl..leklpnLkeLdLsgNnlitdld 40 
                 p+ ++L L+ N++ +i++  ++  pnL+ L L +N  ++ l 
  CCE31499.1  62 PRITTLLLARNRIASIQPtlPNAVPNLTNLVLASN-ELSELA 102
                 6789***************6666*********888.444443 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.17
                 S--EEE--SS-- CS
       LRR_4   2 nLevLdLsnNql 13 
                 +L++L L +N +
  CCE31499.1 112 RLTHLVLMDNPV 123
                 699999999976 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.2   2.3e-05       0.1      93     127 ..     194     228 ..     192     230 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
     DUF4349  93 aRlkaleasedrllallekaksvedlleiereLse 127
                 +R+k   ++ +rl + +++a+s+++++++e+eL+e
  CCE31499.1 194 SRIKLTGDEKKRLHERIRQATSLQEIIALEKELNE 228
                 7999999**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1818.24
//
Query:       CCE31500.1  [L=153]
Description: uncharacterized protein CPUR_05353 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-13   49.9   0.4    4.2e-13   49.4   0.4    1.3  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
    0.00013   22.3   0.8    0.00016   22.0   0.2    1.5  2  Histone        Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.037   14.1   0.1      0.064   13.3   0.1    1.3  1  TAFII28        hTAFII28-like protein conserved region


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.4   7.1e-17   4.2e-13       2      65 .]      19      84 ..      18      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 7.1e-17
                   XXXHHHHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHH..HHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  2 eLPiarvkkImksdpdarkiakdAkeliaecveefieelaseAa..eickkekrKtikaehiklAv 65
                   +LP++rvkkI+++d d+ + ++ A ++i+ ++e+f+++la+eA+   + +++ r+ i++++++ Av
     CCE31500.1 19 QLPLTRVKKIVQQDSDIHMCSNNAAFIITLAAEMFVQHLAQEANtqTKLDRKPRRNIQYKDLANAV 84
                   79******************************************444556889**********997 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.2   2.7e-08   0.00016      63     128 ..      18      84 ..      10      87 .. 0.88
   2 ?   -2.9   0.0       1.4   8.3e+03      66      80 ..     102     115 ..      95     124 .. 0.47

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.7e-08
                 XHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT..XSEEXHHHHHHHH CS
     Histone  63 qklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaK..RvTitpkDiqlAr 128
                  +lp  R v++iv+++++  + s+ a  +++ a+E +  +l++eAn  +k  +  R+ i+ kD+  A+
  CCE31500.1  18 TQLPLTR-VKKIVQQDSDIHMCSNNAAFIITLAAEMFVQHLAQEANTQTKLDRkpRRNIQYKDLANAV 84 
                 469****.9*****999999****************************98655458999999998776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
                 HHHHHHHHHH.TTSS CS
     Histone  66 pfaRvvreivkseke 80 
                 pf++ ++   + +++
  CCE31500.1 102 PFRK-IKATASATQS 115
                 4444.3333333333 PP

>> TAFII28  hTAFII28-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.1e-05     0.064      20      83 ..      18      83 ..      16      86 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
     TAFII28 20 sklnkaavkklvnsvl.sqsvsqnvaivvaglaKvFvgeiveeArevqeeweesg.plqpehlrea 83
                ++l+ + vkk+v++    + +s+n a ++   a +Fv+ + +eA +  +  ++ +  +q ++l +a
  CCE31500.1 18 TQLPLTRVKKIVQQDSdIHMCSNNAAFIITLAAEMFVQHLAQEANTQTKLDRKPRrNIQYKDLANA 83
                5788899*****999956779***********************9877777666668888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1234.62
//
Query:       CCE31501.1  [L=860]
Description: related to chloride channel [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-88  296.7  26.7    2.5e-88  296.7  26.7    1.7  2  Voltage_CLC  Voltage gated chloride channel
    1.6e-13   50.9   0.3    1.7e-05   25.2   0.1    2.5  2  CBS          CBS domain


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.12   1.1e+03     165     185 ..     133     153 ..     122     161 .. 0.66
   2 !  296.7  26.7   2.8e-92   2.5e-88       1     353 [.     206     588 ..     206     589 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.12
                  HHHHHHHHHHHHHHHHHHHHH CS
  Voltage_CLC 165 ilfvllGilgGllgalfvrll 185
                  i++ ++G ++Gl +a+ + ++
   CCE31501.1 133 IVVTVIGAAIGLNAAFLNIIT 153
                  555666666666666666555 PP

  == domain 2  score: 296.7 bits;  conditional E-value: 2.8e-92
                  HHHHHHHHCCCCC-GGGSC-SHHHHHHHCTTSS--..-HHHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHHTT..--SHHHHH.HHHHH CS
  Voltage_CLC   1 lggllagllvklvapeaagsGipevkaalngvkgp..lslrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrllkl.srndrdrr.lvaaG 94 
                  +++++++ lv+ +ap+aagsGi+e+k++++g+  +  l +++l++k + + l+++sGls+G+eGp+v+ + + g+++srl++  ++n ++ r +++a 
   CCE31501.1 206 CFAFISASLVRSFAPYAAGSGISEIKCIIAGFVMKgfLGFWTLVIKSVCLPLAIASGLSVGKEGPSVHYAVCTGNVVSRLFSKyRSNASKTReILSAC 303
                  6899**************************************************************************995543666667778***** PP

                  HHHHHHHHHT-HHHHHHHHCTTTSTSS--TTHHHHHHHHHHHHHHHHHHCTTS-S....-.T---...--GGGHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Voltage_CLC  95 aAAGiAAaFnaPlgGvlfalEevsrefslrallpvfvasvvaalvlrlllgeepa....fgeveslfalsllelilfvllGilgGllgalfvrlllkv 188
                  aAAG+A+aF++P+gGvlf+lEe+s++f l++++++ ++++va+ vl +++  ++     f+ v    +++++e+++++++G++gGl+ga+ ++ +l++
   CCE31501.1 304 AAAGVAVAFGSPIGGVLFSLEEMSNHFPLKTMWRSYFCALVATAVLAAMNPFRTGqlvmFQ-VRYDRDWHFFEILFYIVIGLFGGLYGAFVMKWNLRA 400
                  *************************************************655533445455.655559****************************** PP

                  HHHHHCHHCHHHHHHHHHHHHHHHHHHHCCCSCC.CSSSSC.CHHHHHC...TT-S-.............HHHHHH...HHHHHHHHHHHHHCTT-CS CS
  Voltage_CLC 189 erlfrkleklkikkrlepalvgllvgllglllpasvlgggy.eliasll...egstl.............llsllllllllllkllataltlgsgvpg 269
                  + +++++  l ++++le+ l+++ +++++++  a +l+  + e+++ l+   e                  +++++l ++++l++l++++++g++vp+
   CCE31501.1 401 QAFRKQY--LTKYAVLEATLLAAGTAIVCYPN-A-FLRIDMtESMEILFlecE---GaedyhglcepdkrFWNIVSLSMATILRILLVIVSYGCKVPA 491
                  **99988..5556889***************7.4.666666256777775442...3455788999999999999*********************** PP

                  BSHHHHHHHHHHHHHHHHHHHHHH-C............TSSC....HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC--GCCHHHHHHHHHHHHHHHC CS
  Voltage_CLC 270 GifaPsLviGAalGrlvglvlalllp............gaass.dpgafalvGmaaflagvtrapltaiviviEltgdlelllplmlavliAkavad 353
                  Gif+Ps++iGA++Gr+vg ++++++              ++++ +pg++a +G+aa l+g+++++++++vi++Eltg+l+++lp+m++v + kav++
   CCE31501.1 492 GIFVPSMAIGASFGRAVGIMVQAMHEanpssilfsackPDEPCiTPGTYAFLGAAAALSGIMHLTVSVVVIMFELTGALTYILPTMIVVGVTKAVSE 588
                  *********************99977899999999***899999***************************************************96 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   1.9e-09   1.7e-05       1      54 [.     620     676 ..     620     679 .. 0.87
   2 !   23.2   0.0   7.7e-09   6.9e-05       8      55 ..     735     781 ..     727     782 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.9e-09
                 HHHHSBSSCEEEETT.SBHHHHHHHHHHHTSSEEEEEETTT.B.EEEEEEHHHHHHH CS
         CBS   1 Vgdimtrdvvtvppd.ttleealelmrekgvsrlPVVdedg.k.lvGivtlrDllra 54 
                 V+ +m++ vv++p + +tl+e+ +l++e ++ ++P+V++++ k lvG++ ++ l  a
  CCE31501.1 620 VSKVMRTSVVSFPVTgMTLSEVERLLAEDKYQGFPIVEDNNsKiLVGYIGRTELRYA 676
                 789************999********88889******666654699***99998766 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 7.7e-09
                 SCEEEETTSBHHHHHHHHHHHTSS.EEEEEETTTBEEEEEEHHHHHHHH CS
         CBS   8 dvvtvppdttleealelmrekgvs.rlPVVdedgklvGivtlrDllral 55 
                  +vt++p  +le ++el+r+  ++ r+  ++  gkl G+vt +D lr+ 
  CCE31501.1 735 TPVTAHPRLPLETVMELFRK--IGpRVILIEYHGKLTGLVTVKDCLRYQ 781
                 579***************77..877995589999************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5800.03
//
Query:       CCE31502.1  [L=227]
Description: uncharacterized protein CPUR_05355 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00039   20.6  15.7     0.0009   19.4  15.7    1.6  1  EamA            EamA-like transporter family
  ------ inclusion threshold ------
      0.042   13.9   2.0      0.066   13.3   2.0    1.4  1  TMEM234         Putative transmembrane family 234
       0.08   11.6   0.0      0.097   11.3   0.0    1.1  1  MDM31_MDM32     Yeast mitochondrial distribution and morpholo


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4  15.7   1.5e-07    0.0009       3     135 ..      31     155 ..      29     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.5e-07
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsas.nasli.ts 99 
                 ++l+a+++  + a+++v++k +       t++  ++l ++i+ l+ ++   + + +   +++++   l l  + +++ lf++al k++++ ++s++ t 
  CCE31502.1  31 WVLYAMASGACAAFNGVFAKLT-------TTSLTSTLSSSIAHLLHLPGYHNAF-EVLIRGIFF--ALNLTFNGIMWTLFTKALAKGTSTtQVSVLnTG 119
                 7899***************995.......3333344556666666666666666.444455444..3444679999********998887588888889 PP

        EamA 100 lePvftlilsvlllgekltlkqllgivlillGvlli 135
                 +  v+t++l+ +++ e l  + ++g++l ++G +++
  CCE31502.1 120 TNFVITALLGLVIFSEALPPMWWAGAGLLVVGNVVV 155
                 ********************************8887 PP

>> TMEM234  Putative transmembrane family 234
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.0   1.1e-05     0.066      37     115 ..      76     155 ..      49     156 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
     TMEM234  37 elkflllrlkyliplllNqsgSvlfflllgkadlslavpiaNs.lafvfTvltelllgekvlkkktvlgmllvvvgialc 115
                  +++l+  + +++ l  N     lf  +l+k   ++ v + N+  +fv+T+l +l++  + l    ++g +l vvg +++
  CCE31502.1  76 AFEVLIRGIFFALNLTFNGIMWTLFTKALAKGTSTTQVSVLNTgTNFVITALLGLVIFSEALPPMWWAGAGLLVVGNVVV 155
                 56668888889999999999999********999999999997478*****************************98876 PP

>> MDM31_MDM32  Yeast mitochondrial distribution and morphology (MDM) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.6e-05     0.097      86     154 ..     128     198 ..      84     211 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.6e-05
  MDM31_MDM32  86 tgvkvvFEsaivpkw..kdgkisfknvfvsrrPkqkkskvekgsskeaaakaaaaaaaeekese.eeeeeee 154
                   g  v+F +a  p w  + g +   nv+v r+ + ++++v +g ++++a    ++++++++e e ++++ ++
   CCE31502.1 128 LG-LVIFSEALPPMWwaGAGLLVVGNVVVGRKDEGERKEVGEGGEQSEAVPLMQNSNENQDEDEgQDQDRDR 198
                  44.489*********4445669**********9977777766655554443443333333333323333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1631.61
//
Query:       CCE31503.1  [L=115]
Description: probable TFIIA subunit [transcription initiation factor] [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-24   85.9   1.1    2.2e-24   85.4   1.1    1.3  1  TFIIA_gamma_C  Transcription initiation factor IIA, gamma sub
    9.1e-24   83.2   0.3    1.2e-23   82.8   0.3    1.2  1  TFIIA_gamma_N  Transcription initiation factor IIA, gamma sub


Domain annotation for each model (and alignments):
>> TFIIA_gamma_C  Transcription initiation factor IIA, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   1.1   2.4e-28   2.2e-24       1      45 []      63     108 ..      63     108 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 2.4e-28
  TFIIA_gamma_C   1 tfKgkLdtYrfcDdVWtFiiknvefklen.detvkvdkvKIVACns 45 
                    +fKg+LdtYrfcD+VWtF+iknv+fk++n +++v++dkvKIV+Cn+
     CCE31503.1  63 QFKGSLDTYRFCDEVWTFLIKNVTFKMDNgSQSVHADKVKIVSCNA 108
                    6****************************88888**********97 PP

>> TFIIA_gamma_N  Transcription initiation factor IIA, gamma subunit, helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.3   1.4e-27   1.2e-23       1      48 []       8      55 ..       8      55 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 1.4e-27
  TFIIA_gamma_N  1 yYelYRrstlGtaLtdaLDeliqegkIspqlamkVLeqFDksineaLa 48
                   +YelYRrs++G aLtd+LD+li++++I+pqlamk+L +FD++i+e L+
     CCE31503.1  8 FYELYRRSSIGLALTDTLDDLISDERINPQLAMKILGNFDQAITESLQ 55
                   5********************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 904.12
//
Query:       CCE31504.1  [L=202]
Description: probable vacuolar ATP synthase 22 kDa proteolipid subunit [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-26   90.7  34.1    1.8e-15   57.0  11.9    2.7  3  ATP-synt_C   ATP synthase subunit C
  ------ inclusion threshold ------
       0.23   10.8   2.4       0.48    9.7   0.1    2.1  2  SLATT_5      SMODS and SLOG-associating 2TM effector domain f
       0.72    9.9   3.0       0.78    9.8   0.2    2.0  2  DUF3671      Protein of unknown function


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4      0.87   5.2e+03       8      23 ..       2      17 ..       1      23 [. 0.66
   2 !   57.0  11.9     3e-19   1.8e-15       1      59 [.      48     106 ..      48     107 .. 0.98
   3 !   45.3   7.8   1.4e-15   8.3e-12       3      59 ..     134     190 ..     132     191 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.87
                .GGGHHHHHHHHHHHH CS
  ATP-synt_C  8 GlsalgsGigiGkags 23
                G   lg+G+ +  +  
  CCE31504.1  2 GYYSLGAGGVTSFLTV 17
                6667888887766554 PP

  == domain 2  score: 57.0 bits;  conditional E-value: 3e-19
                 HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   1 lgaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivali 59 
                 lg++l++Gls++g+++gi ++gs++++a ++ p+++tk li ++f+e++a+yg+i+a++
  CCE31504.1  48 LGIALCIGLSVVGAAWGIFITGSSILGAGVKAPRIRTKNLISIIFCEVVAIYGVIMAIV 106
                 79*******************************************************97 PP

  == domain 3  score: 45.3 bits;  conditional E-value: 1.4e-15
                 HHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   3 aglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivali 59 
                  gl vGl+ l +G+++G+ gs+++ a a +p+lf+k l+i +f+ +++l+gLi++l+
  CCE31504.1 134 SGLTVGLCNLICGVAVGINGSGAALADAADPSLFVKILVIEIFSSVLGLFGLIIGLL 190
                 79*****************************************************98 PP

>> SLATT_5  SMODS and SLOG-associating 2TM effector domain family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1     8e-05      0.48      23      52 ..      79     109 ..      76     138 .. 0.83
   2 ?    0.7   0.3     0.045   2.7e+02      63      85 ..     172     194 ..     162     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 8e-05
     SLATT_5  23 aeRlrrknklstfslsllSvylivlslls.n 52 
                 a R+r+kn +s++++ ++++y+++++++   
  CCE31504.1  79 APRIRTKNLISIIFCEVVAIYGVIMAIVFsS 109
                 669************************9832 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.045
     SLATT_5  63 lldflsiilSilvlvisllessk 85 
                 +++++s +l+ + l+i+ll+s+k
  CCE31504.1 172 VIEIFSSVLGLFGLIIGLLVSGK 194
                 67889999999999999999986 PP

>> DUF3671  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00013      0.78      43      76 ..      85     118 ..      77     149 .. 0.69
   2 ?    0.3   0.2      0.12   7.1e+02      45      69 ..     171     195 ..     163     201 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00013
     DUF3671  43 kyglllilpvllpliglivpilfeakskkslkkk 76 
                 k  +++i++ ++ + g+i++i+f+ k++ +  + 
  CCE31504.1  85 KNLISIIFCEVVAIYGVIMAIVFSSKVDRTSVAL 118
                 4478899*****************9887443333 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.12
     DUF3671  45 glllilpvllpliglivpilfeaks 69 
                  ++ i+ ++l l gli+ +l++ k 
  CCE31504.1 171 LVIEIFSSVLGLFGLIIGLLVSGKA 195
                 3444677888999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1391.51
//
Query:       CCE31505.1  [L=675]
Description: probable gephyrin, glycine receptor-tubulin linker protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-54  181.6   0.2    9.2e-27   93.5   0.0    2.2  2  MoCF_biosynth  Probable molybdopterin binding domain
    3.7e-39  134.0   0.2    6.1e-39  133.3   0.2    1.4  1  MoeA_N         MoeA N-terminal region (domain I and II)
    1.1e-15   57.6   0.0    3.7e-15   55.9   0.0    2.0  1  MoeA_C         MoeA C-terminal region (domain IV)


Domain annotation for each model (and alignments):
>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.1   2.7e-28   1.6e-24       1     144 []       8     155 ..       8     155 .. 0.94
   2 !   93.5   0.0   1.5e-30   9.2e-27       1     143 [.     432     581 ..     432     582 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 2.7e-28
                    EEEEE-HHHHTTSSGBHHHHHHHHHHHT...TSEEEEEEEEE-SSHHHHHHHHHHHHHTS...SEEEEESS-SSSTT--HHHHHHHHHSEE-HHHH CS
  MoCF_biosynth   1 avitvGdellsgkieDtngpllaellke...lgvevskytvvpDdeeeikeallaaleea...dviittGGtGptpdDvtpealaklfekelegfe 90 
                    a+++v+++  +  ++D+++++l + ++e   + ++v +  +v D+  +i++++++++++a   ++i+ttGGtG+++ D tpea+ +l++k+++g+ 
     CCE31505.1   8 AILIVSTTASQDPTTDSTASVLRDVFAEdggRKWRVVREHIVTDNLLAIQKEVMQWADGAeapNLIVTTGGTGFAETDGTPEAIIPLLHKQAPGLV 103
                    79*************************8677889*******************9998888999********************************* PP

                    HHHHHHHHHHCCTTSHGGGGGGE.EE....TTE.EEEE-SSHHHHHHHHHHHHHGGHHH CS
  MoCF_biosynth  91 eafrrvslkpgkpvgvapgailsrav....gkt.iigLPGspkavkealeeillpaleh 144
                     a+   sl       ++p+a++ r v     k+ i++LPGspka+ke le il ++l+h
     CCE31505.1 104 HAMLSASLA------ITPFAMMARPVagvrHKSlIVTLPGSPKAAKENLEAIL-KTLPH 155
                    ********9......9********99**97444699****************9.88876 PP

  == domain 2  score: 93.5 bits;  conditional E-value: 1.5e-30
                    EEEEE-HHHH.........TTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHHHHHHHTSSEEEEESS-SSSTT--HHHHHHHHHSEE-H CS
  MoCF_biosynth   1 avitvGdell.........sgkieDtngpllaellkelgvevskytvvpDdeeeikeallaaleeadviittGGtGptpdDvtpealaklfekele 87 
                    a++++Gdel+          g+++Dtn  +l ++ +++g++++++++ +D+   ++e+++aal+++dv+ittGG+++++ D+ + ++++ ++    
     CCE31505.1 432 AILSTGDELVdhyhpeplrVGQVRDTNRITLTSAARQQGYHLIDQGIAGDEDGLLEETVRAALRKNDVLITTGGVSMGELDLLKPTIERKMGG--- 524
                    79************************************************************9************************655553... PP

                    HHHHHHHHHHHHHCCTTSHGGGGGGE.EE...TTEEEEE-SSHHHHHHHHHHHHHGGHH CS
  MoCF_biosynth  88 gfeeafrrvslkpgkpvgvapgailsrav...gktiigLPGspkavkealeeillpale 143
                       ++f rv++kpgkp ++a++   ++      kti+ LPG+p ++ +++ +++lp l+
     CCE31505.1 525 --TIHFGRVAMKPGKPATFATVPFKDNHGrriWKTIFSLPGNPASALVTFYLFVLPSLH 581
                    ..4******************98887666887788*********************997 PP

>> MoeA_N  MoeA N-terminal region (domain I and II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.2     1e-42   6.1e-39       2     157 .]     247     419 ..     246     419 .. 0.86

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 1e-42
                 -HHHHHHHHHHH-HH-EEE.EEGGCG-TT-BBSS-EE-SS-BSSS-EESSSEEEEEEBTTB--................-S---TT-.EEEE-TTSB-- CS
      MoeA_N   2 sveealaiilaaleleeee.vplaaealgrvlaedvvApedvPpfdnSamDGYAvraeagsgaseeep.....saageeperllpgg.avrimTGaplP 93 
                 sv+ al++i+++++ +e   ++++  ++ +vlaedv+Ape+vP+f++S++DGYAv ++   + + + p     +aa ++++  l++g ++ri+TGaplP
  CCE31505.1 247 SVDSALSLISEHTPSPEVDnCDIEDLLIDCVLAEDVKAPENVPAFRASIVDGYAVVVPPDGKLEGVFPvtsisHAAPSDATLFLKEGeVARITTGAPLP 345
                 89**********9655666688855689***************************999999999999999999666666666677777*********** PP

                 TT--EEEEGGGE....E........EETTE.....S--STTTTEE-TTSSB-TTSEEE-TTBB--CC..CHHHHHHCT CS
      MoeA_N  94 egadaVvpvEdte...eee....aketvev.....kavkpgenvrraGedikaGevllragtrltpa..eigllasvG 157
                 +ga+ V++vEdt+   + +    +++         + v+pg+nvr++G+di++G+++lr+g++++ +  e+glla++G
  CCE31505.1 346 PGATSVIMVEDTQlisT-TddgqEEK---DieihiQGVRPGDNVREIGSDIAKGALILRKGQHISGVggEVGLLAACG 419
                 ***********988641.24443222...135689******************************9999*******98 PP

>> MoeA_C  MoeA C-terminal region (domain IV)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   6.1e-19   3.7e-15       2      70 ..     596     665 ..     595     667 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 6.1e-19
                 EEESS-EE--SSS-EEEEEEEE.S-S-EEEEEE-S---TT-GGGCTT--EEEEE-TT--EE-TT-EEEEE CS
      MoeA_C   2 arlaedlksdpgrreflRvilt.eedgeyvaeptgkqgSglLsslaeAnglivipegtegleaGeeVevi 70 
                 + l++d++ d+ r+e++R+ +t   dg ++a++tg q S+++ sl++An+l+ ip+g++ l +G+ V+++
  CCE31505.1 596 VALGHDFPVDASRPEYHRAAVTvGSDGVLMATSTGGQRSSMVGSLRGANALVCIPSGKQPLGKGAIVDAL 665
                 57999*****************9778******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 5110.76
//
Query:       CCE31506.1  [L=356]
Description: uncharacterized protein CPUR_05359 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-76  257.3   0.1    2.7e-76  256.5   0.0    1.4  2  ATP_bind_1  Conserved hypothetical ATP binding protein
     0.0039   16.2   0.0     0.0072   15.3   0.0    1.3  1  MeaB        Methylmalonyl Co-A mutase-associated GTPase MeaB
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.033   13.9   0.0    1.4  1  AAA_29      P-loop containing region of AAA domain
      0.023   14.6   0.0        1.6    8.6   0.0    2.3  2  AAA_31      AAA domain
      0.064   13.4   0.0       0.12   12.5   0.0    1.6  1  AAA_33      AAA domain
       0.16   11.4   0.0       0.27   10.6   0.0    1.4  1  KTI12       Chromatin associated protein KTI12
       0.66   10.4   0.1       0.66   10.4   0.1    2.2  2  AAA_17      AAA domain


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.5   0.0   1.1e-79   2.7e-76       1     239 [.       7     255 ..       7     257 .. 0.98
   2 ?   -3.0   0.3         2   5.1e+03     165     202 ..     280     313 ..     272     323 .. 0.51

  Alignments for each domain:
  == domain 1  score: 256.5 bits;  conditional E-value: 1.1e-79
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmedlglgpngalvvaleflresldwldeelekeeddyllfDtP 99 
                 ++G +GsGK+t++  + ++l ++gr + vvNLDPA+++++Y++a+dir l++ledvm d +lgpng++ +ale l+ + +wl+e l++  +dy+lfD+P
  CCE31506.1   7 ILGSPGSGKSTYCDGMHQFLGAIGRACSVVNLDPANDHTNYPCALDIRTLVKLEDVMRDDRLGPNGGILYALEELEHNYEWLEEGLKELGEDYILFDCP 105
                 68************************************************************************************8889********* PP

  ATP_bind_1 100 GQielfthseslakiveeLes.efalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkek..lekeleffedvealslllekee. 194
                 GQ+el+th++sl++i+ +L++  f++v+v+L Ds +lt+p+ ++s++l++l+am+++++Ph++vl+k+D ++ +  l ++l+f++dv++l++l+   e 
  CCE31506.1 106 GQVELYTHHASLRNIFYRLQKsGFRFVCVHLSDSFCLTQPSLYVSNVLLSLRAMIQMDMPHINVLSKIDKVSAYdeLPFNLDFYTDVDDLTYLTPYLEa 204
                 **********************************************************************99888999****************99999 PP

  ATP_bind_1 195 .......ekykklaeaiaelleefalvlrflplssekeesiedllslideal 239
                        +k++ l+ea+a+++e+++lv r  +l++e+++s+  ll++id a 
  CCE31506.1 205 espalrsDKFAGLNEAVARMIEDYGLV-RYEVLAVENKKSMMHLLRVIDRAG 255
                 99*****9*******************.*********************875 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2
  ATP_bind_1 165 kfDllkeklekeleffedvealslllekeeekykklae 202
                  +D+ +   + +  ++ + e++++l+ + +e +++lae
  CCE31506.1 280 MMDV-Q---NIQERWIDEKEEYDRLEREADEEQARLAE 313
                 4555.2...23444555555555555555444444444 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.8e-06    0.0072      35      71 ..       8      44 ..       5      50 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.8e-06
                EE-TTSSHHHHHHHHHHHHHCTT--EEEEEE------ CS
        MeaB 35 tGvPGaGkstlvealglelrrrGkrvavlavDPsspf 71
                 G+PG+Gkst  + + + l + G+  +v+ +DP+   
  CCE31506.1  8 LGSPGSGKSTYCDGMHQFLGAIGRACSVVNLDPANDH 44
                69*******************************9876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.3e-05     0.033      25      45 ..       5      25 ..       2      31 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
      AAA_29 25 tlltGpsGsGKSTllDAiqal 45
                 l+ G  GsGKST  D +   
  CCE31506.1  5 QLILGSPGSGKSTYCDGMHQF 25
                59**************99765 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.024        60      12      46 ..      12      46 ..      10      67 .. 0.88
   2 ?    8.6   0.0   0.00064       1.6      97     136 ..      78     115 ..      72     118 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.024
      AAA_31 12 GvGKTTtsvnlaaalaklgkkvLlvDlDpQanatt 46
                G GK+T +  + ++l   g    +v+lDp +  t+
  CCE31506.1 12 GSGKSTYCDGMHQFLGAIGRACSVVNLDPANDHTN 46
                99***************************988886 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00064
      AAA_31  97 lvelekkeeilkellekvkdeYDyiiiDcpPsLglltena 136
                 l ele++ e l+e l+++ +  Dyi++Dcp +++l+t  a
  CCE31506.1  78 LEELEHNYEWLEEGLKELGE--DYILFDCPGQVELYTHHA 115
                 66777777888888888887..78***********99865 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.7e-05      0.12       4      31 ..       7      39 ..       5     137 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.7e-05
      AAA_33  4 lvGlpGsGKstlaerllkklg.....avllssd 31
                + G pGsGKst+ +++++ lg     + +++ d
  CCE31506.1  7 ILGSPGSGKSTYCDGMHQFLGaigraCSVVNLD 39
                67***************9999776766666665 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00011      0.27       5      44 ..       6      44 ..       1      58 [. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
                EEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH.TT CS
       KTI12  5 vltGlPssGKstrakeLakaleeekrsvvviddeslgiek 44
                ++ G P sGKst+ + +++ l + +r++ v++ +  + ++
  CCE31506.1  6 LILGSPGSGKSTYCDGMHQFLGAIGRACSVVNLDPAN-DH 44
                689***************************9987665.44 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00026      0.66       1      17 [.       8      24 ..       8      29 .. 0.84
   2 ?   -1.7   1.4       1.4   3.6e+03      40      66 ..     291     317 ..     273     325 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
                EE-TTSSHHHHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqceklve 17
                lG PGsGK+t+c+ + +
  CCE31506.1  8 LGSPGSGKSTYCDGMHQ 24
                699*********87766 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
                 HSSHHHHCTSHHHHHHHHHHHHHHHHH CS
      AAA_17  40 akardemrklpleekkelqkeaaekia 66 
                 +++++e+++l+ e ++e  ++a+e+ +
  CCE31506.1 291 IDEKEEYDRLEREADEEQARLAEEQAM 317
                 344455555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2552.99
//
Query:       CCE31507.1  [L=1506]
Description: related to neuropathy target esterase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-30  103.7   0.4    9.4e-17   60.9   0.1    5.6  5  cNMP_binding  Cyclic nucleotide-binding domain
      1e-16   61.7   3.9    1.3e-15   58.1   3.9    2.6  1  Patatin       Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0    0.0074        67       6      38 ..     190     218 ..     185     230 .. 0.73
   2 !    4.4   0.0    0.0042        38      66      87 ..     377     398 ..     366     400 .. 0.89
   3 !   16.1   0.0     1e-06     0.009       2      41 ..     691     731 ..     690     738 .. 0.85
   4 !   11.5   0.0   2.6e-05      0.23      40      89 .]     764     813 ..     755     813 .. 0.88
   5 !   60.9   0.1   1.1e-20   9.4e-17       2      89 .]     842     929 ..     841     929 .. 0.97

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0074
                   TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS. CS
  cNMP_binding   6 agevifrqGdpadslyivlsGevrvyrlsedgk 38 
                   age+i  + ++  +++iv+ G v+++   ++g+
    CCE31507.1 190 AGETINLEEEK--GFCIVVDGLVEIF--VKSGR 218
                   67777777777..6***********6..33333 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0042
                   EEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding  66 vvAltdsellalprddflellq 87 
                   ++A  d++++++p+++f++l++
    CCE31507.1 377 ARATVDTTIAVIPASAFRRLIR 398
                   89999***************97 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 1e-06
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEE.EEEETTS.EEE CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrv.yrlsedgkevv 41 
                   + f++g+v+++qG++  +ly+v+ G + + + ++e+g +++
    CCE31507.1 691 VFFPKGSVLVEQGERNPGLYYVVDGFLDIgTYTTEQGTQSI 731
                   579************99**********99646888887755 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 2.6e-05
                   EEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH- CS
  cNMP_binding  40 vvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqqd 89 
                   + +  ++pG l G ++ +   ++  +vvA+td+ + +lpr++++++++++
    CCE31507.1 764 RSVSLVKPGGLAGYIGSVSSYRSFIDVVAKTDVYVGFLPRAALERIVDRY 813
                   578899************87889999********************9986 PP

  == domain 5  score: 60.9 bits;  conditional E-value: 1.1e-20
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH- CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqqd 89 
                   +++ ag+vif+ Gd+ + +yivl G++r++   +dg  + la++g+G+ +Gel++lt++ r+ t+ A+ d+el+++pr  f++l q++
    CCE31507.1 842 VQVNAGQVIFHGGDESEAIYIVLNGRLRLVEDRKDGGMTALAEFGQGESVGELEVLTETVRPGTLHAIRDTELVKFPRTLFNSLAQEH 929
                   5789********************************999******************999***********************99986 PP

>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   3.9   1.5e-19   1.3e-15       1     200 [.    1203    1363 ..    1203    1366 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 1.5e-19
     Patatin    1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaea 97  
                  Lvl+GGG+rg +++g+++a+ +e+g+ +d+i+GtS+GA++++l+a   d   ++ +   ++ + +  +            + l+ ++   ++ +++ 
  CCE31507.1 1203 LVLGGGGARGMSQIGIIRAM-EEAGIPIDVIGGTSIGAFVGALYARHADIVPMFGFAKKFFGRMASLWR-----------FALDLTYPSASYTTGHE 1287
                  8*******************.********************9999999999999999999999999999...........99*************** PP

     Patatin   98 lrellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglfppvsldgelyvDGGi 194 
                  + + + k++++ +++++     +                            +++ + ++ ++ + +  ++ +raS+++ gl+pp   +g  ++DGG 
  CCE31507.1 1288 FNRGIFKTFGKTQIEDFWLEYYCN---------------------------TTNISKSRVEFHTSGYAWRYIRASMSLAGLLPPLCDEGSMLLDGGY 1357
                  ******************999999...........................99******************************************** PP

     Patatin  195 lsNvPi 200 
                  ++N+ +
  CCE31507.1 1358 VDNLTV 1363
                  ***865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.25s 00:00:01.12 Elapsed: 00:00:00.43
# Mc/sec: 10494.47
//
Query:       CCE31508.1  [L=291]
Description: uncharacterized protein CPUR_05361 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-12   47.2   0.0      4e-12   46.3   0.0    1.5  1  DJ-1_PfpI      DJ-1/PfpI family
    2.2e-05   24.2   0.0      3e-05   23.8   0.0    1.2  1  ThiJ_like      ThiJ/PfpI family-like
  ------ inclusion threshold ------
      0.072   12.7   0.0       0.15   11.7   0.0    1.5  1  Peptidase_S51  Peptidase family S51


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   6.6e-16     4e-12       3     144 ..      16     180 ..      14     186 .. 0.78

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 6.6e-16
                 EEEEEETTBEHHHHHHHHHHHHH..........TTEEEEEEESSTSEEEETTSEEEE-SEEGGGCTCC..G-SEEEE--BHHHHHHHHTSH.......H CS
   DJ-1_PfpI   3 vlvlladgvedvElivpvdvlkr..........agikvdvvsvdkeevkgsrGlkvtvdaslddvkaa..eyDalvlpGGragperlrene.......k 82 
                 vl+ l  +++ +++  p++v+ +            ++v++++ + e+  + +G  +    s++++++   ++D+lv++GG++  + l +++        
  CCE31508.1  16 VLFALHPKFDLLDFAGPLEVFTSalhdakdetsKAFEVTIAGAE-EKTLSEQGIIIDSQLSFKEAHQRleDFDILVIVGGNT-KDILDKEQeplglinD 112
                 899999****************7788899998899999999999.5555778999999999999987666***********9.7777776633332223 PP

                 HHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTSEE--SGGGHHHH.....HHTTSEE-SS.SEEEET CS
   DJ-1_PfpI  83 vvelvkefaekgklvaaICagpqlLaaagvlkgrrvTsypavkdkl.....ekagakyvdk.rvvvdg 144
                   el k+   ++++++++C+g++lLa++++l+g ++T++p + ++      ++a  + +++ +v+ d+
  CCE31508.1 113 WAELQKKDPARERTLFSVCTGALLLARENILSGLSATTHPDYLTQFenvcsDAATRNLTERtNVIEDA 180
                 44555666678899****************************99883334444444444445555555 PP

>> ThiJ_like  ThiJ/PfpI family-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   5.1e-09     3e-05      72     162 ..      73     161 ..      33     186 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 5.1e-09
   ThiJ_like  72 plslssesFsleeydlvllpGGsdkavrelleserlhsllveylklvkrekepskvlgaicqgvlalafakpeldlktttlPlwmertsil 162
                  ls+++ +  le++d++ + GG+ k + +   ++    l++++ +l k++ ++++ l ++c g+l la  +    l +tt P ++ +   +
  CCE31508.1  73 QLSFKEAHQRLEDFDILVIVGGNTKDILDK--EQEPLGLINDWAELQKKDPARERTLFSVCTGALLLARENILSGLSATTHPDYLTQFENV 161
                 5677778889***************99443..3344467888888888888*****************99999***********9876644 PP

>> Peptidase_S51  Peptidase family S51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.5e-05      0.15      51      99 ..      58     102 ..      48     110 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.5e-05
                    HHHHHHHHTT-EEEE--TTTS-HHHHHHHHHHSSEEEE--S-HHHHHHH CS
  Peptidase_S51  51 kvrkaleklglevdeLelskdpeeeieeklleadviyvgGGntfrLlkl 99 
                    + +k+l+++g+ +d+   +k+ ++++e+     d++++ GGnt+++l+ 
     CCE31508.1  58 AEEKTLSEQGIIIDSQLSFKEAHQRLED----FDILVIVGGNTKDILDK 102
                    5678999999999998889999999999....************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2137.81
//
Query:       CCE31509.1  [L=146]
Description: uncharacterized protein CPUR_05362 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-09   36.6   0.1    4.3e-09   35.9   0.1    1.4  1  HTH_psq      helix-turn-helix, Psq domain
      3e-08   33.6   0.0    5.1e-08   32.8   0.0    1.4  1  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
    0.00022   20.9   0.1    0.00044   20.0   0.1    1.5  1  HTH_23       Homeodomain-like domain
     0.0036   17.4   0.1     0.0058   16.7   0.1    1.4  1  HTH_28       Helix-turn-helix domain
     0.0051   16.6   0.2     0.0084   15.9   0.2    1.3  1  HTH_30       PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   1.2e-12   4.3e-09       1      40 [.       5      43 ..       5      47 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.2e-12
     HTH_psq  1 tpealaaAleavvnGkmSirkAArkYgiPrsTLwrrkrgk 40
                t+e++  A++av+ G  S+rkAA  Y iP sTL+ r+r++
  CCE31509.1  5 TEEDIKNAIQAVLDG-DSVRKAAAAYKIPESTLHHRLRRT 43
                79*************.9*****************999995 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.4e-11   5.1e-08       1      61 [.      57     113 ..      57     118 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.4e-11
                  THHHHHHHHHHHHHHC-CT---SCHHHHHHHHHHHHHSSSCT-TT-S--CHHHHHHHHHTS CS
  HTH_Tnp_Tc5   1 spelEkaLleWirqlrergipitgelirekAqelaslaadlgepdfkaSkgWldrFkkRhg 61 
                  s+++E  L +Wi  ++++g+p+t++++ +    +      lg++   ++k W++ F++R++
   CCE31509.1  57 SEDQEFNLTNWIIARAALGFPPTHQQLEDFTTSI----VALGGDERPLGKHWVEGFLQRNP 113
                  589******************************9....6689999**************94 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   1.2e-07   0.00044      10      40 ..      12      42 ..       4      50 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.2e-07
      HTH_23 10 illllaeGlsvreIAreLgvsrrTvyrwlkr 40
                +++++++G+svr++A+++ ++++T+ + l+r
  CCE31509.1 12 AIQAVLDGDSVRKAAAAYKIPESTLHHRLRR 42
                89************************88887 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.6e-06    0.0058       4      35 ..      11      42 ..      10      55 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.6e-06
      HTH_28  4 eiikllaaGhsvreaArelgisrrtvyrWikr 35
                 +i+++++G+svr aA+++ i ++t+   ++r
  CCE31509.1 11 NAIQAVLDGDSVRKAAAAYKIPESTLHHRLRR 42
                69***********************9888777 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   2.3e-06    0.0084      12      41 ..      19      48 ..      11      57 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.3e-06
                TT-HHHHHHHHTS-HHHHHHHHHHHHHHHS CS
      HTH_30 12 ggnisatAkaLhvHrnTlryRLrrieellg 41
                g +++++A+a  +   Tl++RLrr +++  
  CCE31509.1 19 GDSVRKAAAAYKIPESTLHHRLRRTKKISS 48
                689*********************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1135.06
//
Query:       CCE31510.1  [L=26]
Description: uncharacterized protein CPUR_05363 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.075   13.1   0.0      0.075   13.1   0.0    1.1  1  YpmT      Uncharacterized YmpT-like


Domain annotation for each model (and alignments):
>> YpmT  Uncharacterized YmpT-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.2e-06     0.075      40      57 ..       8      25 ..       2      26 .] 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.2e-06
        YpmT 40 gYCaLFLsimvftldmkd 57
                g+CaL+L ++vf  d+ +
  CCE31510.1  8 GWCALWLNLAVFSCDAEE 25
                89**********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (26 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 193.68
//
Query:       CCE31511.1  [L=977]
Description: uncharacterized protein CPUR_05364 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-23   83.5  40.4    2.6e-23   82.6   0.5    3.7  3  Hamartin         Hamartin protein
  ------ inclusion threshold ------
      0.034   14.5   0.2        3.5    8.1   0.1    3.1  2  UPF0184          Uncharacterised protein family (UPF0184)
      0.084   12.0   0.5       0.18   10.9   0.5    1.5  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom


Domain annotation for each model (and alignments):
>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.5   4.3e-27   2.6e-23      64     385 ..     184     565 ..     171     587 .. 0.67
   2 !   11.7   1.4   1.2e-05     0.075     689     720 ..     587     618 ..     577     621 .. 0.92
   3 ?   -2.1  25.1      0.19   1.1e+03     402     656 ..     636     902 ..     623     924 .. 0.48

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 4.3e-27
    Hamartin  64 khLlDklneclkkaatrLqaLtLLghvvrrqPsWlhKiakhpllksLLKlLktekdivvLmtgvLvlitLLpmipqsvkqyLpdlfevFgrLaswnlkn 162
                 k L+  ++ +  ++ +r +aL  L+  ++ qP+ lh++  +pl+ +LL +L++++   +   ++ +li+LLp +p+s  ++Lp lf v+grL  w+ ++
  CCE31511.1 184 KELFSVIDGYFVQKIYRKSALRFLCDFIQGQPPHLHQVLDTPLFSDLLLCLQQDTSTTIASAALTTLIMLLPHMPSSSVPHLPALFSVYGRLLFWDREH 282
                 5577888889999999*******************************************************************************7776 PP

    Hamartin 163 p..........................gkvpevylvHLqaslysLFhrLYGmyPcnfvsYLr..shysmkenletFee.vikPm.L....etVR....i 223
                                             +v +  + HL       F  LYG yP nf+ Y r  + y +  n++  ++  ++P  +    e+ R    +
  CCE31511.1 283 ArpiasaygdggtgdeamsrwevatfdAEVDDQVIAHLP----HYFTILYGLYPINFMDYIRkpQRYMRHANASGADDlEVQPTeMrhrsERFRqnhlL 377
                 666888888888888888888888888888888999985....68****************95568999999876655269985322222555566668 PP

    Hamartin 224 HPeLvtgtkdtE.ldptRWKklEthDvVieCaklsldpkeasceegyssv.........................aadptsspytdlqsstgsststpi 296
                 H +  + t d E +d +RW k E+ +vV eC  l l+       + +  +                           + +ss + +  s  + s+s ++
  CCE31511.1 378 HTNFYSLTIDSEkTDLSRWIKSEAAEVVAECMGLCLETDMYHFADLSTAIlepgavhagrnvdydttdgsredaaLLNGSSSKHDSWRSDPTASDSVSS 476
                 9999999***996799********************977777777776669988888888765555555555443222222333333333333333333 PP

    Hamartin 297 stkrlqlsslsgtspavlsvessrskddeislWSPssvcgmttppsspgivpttelelsssasllsskvsstpea.agkatpe..tTPakss 385
                 ++ r+++++ s +s+  ++ +s +++ +  +  SP  ++ ++  +  + +v +   +  +s +++s    stp+  + k  p   + P + +
  CCE31511.1 477 NQTRATVKRRSTQSSIRSQGQSGDGEASLPDTGSPI-LAPVSYHDPLQDLVES--NKAIKSGLHQSLANDSTPSLvVSKDEPVsdGAPTENP 565
                 333322222222222222222222222222444444.2222222222222222..2223333333333333333202233333334444444 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 1.2e-05
    Hamartin 689 GsapsdelktlreqllLlhnqLlyErykRevH 720
                 +++ps+++  l++ +lLl+n L +Ery +++H
  CCE31511.1 587 TESPSQQVAHLQKLVLLLQNDLSFERYLKQQH 618
                 689****************************9 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.19
    Hamartin 402 passrksspprkdeks...esskpdlskqeevenekeleeslkskssvtlseLsdvikelleaesedsvekeeeeaaisqel.seiteekketlvsrgg 496
                  a++++   ++++ ks   + +k++++ ++e e ++ ++++ + k + +l+ L+d  ++  + + e  +++ +e +++  +l + ++ ++ + ++ r++
  CCE31511.1 636 EAETQNLIIMNRNLKSrfeDAKKSEMQAKKESERSRAIAKKWEAKLADKLKTLRDESQRA-HGNLEALQKEVDECKSERDKLrKLLCAAEVKEVHFRQT 733
                 334444444444333311234444444444444455555554455555555555555555.34444444444444444444533344444444555555 PP

    Hamartin 497 ldspfsrtleslaksqrrkrlasalssesisdaegaatkkeaksskeaesslekekscsakqsftpieqklessk........dcpadeeesens.... 583
                 ++s ++  ++ ++ + + +rl  +  +++ ++ e+  t+++  +++++e + ++ k +++++ + ++++ ++  +        +          +    
  CCE31511.1 734 MQSLEMDGTQVESLKLEVQRLTQSERDHQAREHEREKTMRS-AAEARNEVEQYRMKLTALESDMHRTQKLFQA-QikalqaqlSE---------Algeh 821
                 55555544443333333233333333332222222222222.2222222222333333333333333333332.22322222211.........12233 PP

    Hamartin 584 ......leeklltpspckkaskqkvstqegeplp.YehllelaLpktaslfvkkktaevlkkakg.ekeeeavsslsPlev 656
                       ++  + t+ + + a++++++ q + +++ Y  l  ++L+  +++ +++++++  ++++  ++ +    s+sP+ v
  CCE31511.1 822 erpvasSSLAIETALAASRAKQAELQKQYSLLMRkYTVLQSSLLDMQSEHEQDQQRQQYQQQQQLaHAADYLSLSTSPQGV 902
                 344333444444555555555777777777777669999999999999999999998888888774555566668899866 PP

>> UPF0184  Uncharacterised protein family (UPF0184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00059       3.5      33      58 ..      28      53 ..      26      67 .. 0.89
   2 ?    2.5   0.0     0.031   1.9e+02      55      76 ..     521     542 ..     517     548 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00059
     UPF0184 33 smLDqinsaLDalEernDdlnskLrE 58
                s L +in+ L +lEe+nD    +L+ 
  CCE31511.1 28 SLLSNINTFLQDLEEHNDAAAEQLQG 53
                67999***************999985 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.031
     UPF0184  55 kLrELlesnRqiRlefaeqlde 76 
                  L++L+esn+ i+  +++ l +
  CCE31511.1 521 PLQDLVESNKAIKSGLHQSLAN 542
                 69***********999988653 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5     3e-05      0.18     175     266 ..     791     893 ..     761     904 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3e-05
                      ECCTTTSSSTTCHHH....HHHHHHHCHHHHSS-EEEEEESE-B......ST--TTHHHHHHCCCH-CCCCCCCCCHCCHH.HEEECETTEEEE CS
  Glyco_hydro_2_C 175 diysrmyekvgllee....lekelenekkklqkPlilcEYgham......gnslGglqeytelfkkyeeyQggfiweyidq.aiqkrdeavgge 257
                        +s m  +++l +     l+++l++  +++++P+ ++  + ++         + + ++y  l++ky  +Q +++++  ++  +q+r+++ +++
       CCE31511.1 791 ALESDMHRTQKLFQAqikaLQAQLSEALGEHERPVASSSLAIETalaasrAKQAELQKQYSLLMRKYTVLQSSLLDMQSEHeQDQQRQQYQQQQ 884
                      45555555555544445559999999999999999777665544111010344556789*****************998772567788888899 PP

                      EECETCTCS CS
  Glyco_hydro_2_C 258 llayggDfk 266
                      +la+ +D+ 
       CCE31511.1 885 QLAHAADYL 893
                      *******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2218  (0.12371); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.51
# Mc/sec: 5754.06
//
Query:       CCE31512.1  [L=482]
Description: related to glucan 1,3-beta-glucosidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.5   0.1       0.36   11.1   0.0    1.8  2  WXG100    Proteins of 100 residues with WXG


Domain annotation for each model (and alignments):
>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     2e-05      0.36      28      71 ..      79     122 ..      68     132 .. 0.82
   2 ?   -2.9   0.0      0.45   8.1e+03       8      24 ..     213     229 ..     209     233 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2e-05
                 HHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  28 qrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeis 71 
                 +++k + + l + W  a +d f++e++ +k+++q+++d+L+++ 
  CCE31512.1  79 AAIKTKTSLLFGLWASAGQDNFNNELAALKNTIQQYCDQLDGLV 122
                 5566666666889***************************9986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHHHHH CS
      WXG100   8 elrqaaarfqkqaeele 24 
                  ++ aa  fq++a++++
  CCE31512.1 213 GIDNAAYLFQAAADKVK 229
                 55666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 3249.32
//
Query:       CCE31513.1  [L=298]
Description: uncharacterized protein CPUR_05366 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-62  211.4   0.0    1.8e-62  210.9   0.0    1.2  1  Sulfotransfer_4  Sulfotransferase domain
    2.8e-05   24.6   0.3     0.0012   19.3   0.0    2.8  3  Sulfotransfer_3  Sulfotransferase family
  ------ inclusion threshold ------
       0.14   12.5   0.0       0.27   11.6   0.0    1.4  1  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 


Domain annotation for each model (and alignments):
>> Sulfotransfer_4  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.9   0.0   3.1e-66   1.8e-62       3     215 .]      20     248 ..      18     248 .. 0.91

  Alignments for each domain:
  == domain 1  score: 210.9 bits;  conditional E-value: 3.1e-66
  Sulfotransfer_4   3 iglGlpRtGTkSlkaALeiLgykpvyhmeevieng.sdlkewaealeakkegk...kpitredfdkllggydavvdvpaalfaeelleayPdak 92 
                      i+ Gl RtG+kS+++AL++Lg++++yhm++v  n  +d   w++a+++k+ +     ++tr+d+d+llg+ +a+vd+p+a+f+ +l+eayP+ak
       CCE31513.1  20 IVHGLHRTGSKSTRTALHQLGIHKCYHMVDVCANLeRDAGLWIRAMQNKFGDAgkdDKWTRADWDQLLGDSQACVDTPSAFFTIDLAEAYPEAK 113
                      899***********************************************877999************************************** PP

  Sulfotransfer_4  93 vIlteRdpekWlksmkktllalrsetls.rllal..ldpllellaklvellralvrrlfgagsdaedeeaakeayeehnervrevvpaerlLvy 183
                      v++ +RdpekW++s++ ++++ +++t    +l++  l ++l  ++++ +l+ a++++++  + +a ++++a ++y+e ++rvre++pa+r L++
       CCE31513.1 114 VVILNRDPEKWYESVNGSVGPSMKPTSAiGALQYlyLATMLPDFRQWTRLITAIFQYCIPFD-HATEKDKAIAWYNESYRRVREAIPADRCLEF 206
                      ***********************995553556655567777778999999999999998875.89***************************** PP

  Sulfotransfer_4 184 kvkdGWepLceFLgkpvP...........devpFPrvndgeef 215
                      +vkdG+ pLceFL++pvP           d +pFP+vnd+++f
       CCE31513.1 207 SVKDGFRPLCEFLDVPVPtvrdeqtgqvtD-APFPHVNDRAAF 248
                      ******************887655555533.8********986 PP

>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.043   2.6e+02       3      52 ..      20      76 ..      16      92 .. 0.72
   2 !   19.3   0.0     2e-07    0.0012     107     155 ..      89     140 ..      47     171 .. 0.75
   3 ?    0.8   0.0     0.088   5.3e+02     161     192 ..     177     207 ..     149     224 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.043
                     EEE--TTSSHHHHHHHHHT........STTEE--S--.--TT.-SBHHHHHHHHTT-S CS
  Sulfotransfer_3  3 fivGlpRSGTTlLhrlLaa........hpdvripeetlfvaprllalleawskdgrel 52
                     ++ Gl R+G+   +  L +          dv+++ e  +    ++a+++++++ g++ 
       CCE31513.1 20 IVHGLHRTGSKSTRTALHQlgihkcyhMVDVCANLER-DAGLWIRAMQNKFGDAGKDD 76
                     688********99999999888777644447766666.55556777777666666554 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 2e-07
                      E.....EESSGGG-HHHHHHHBSSEEEEEEE--H.HHHHHHHHHTT-------- CS
  Sulfotransfer_3 107 d.....KsPshlfrldlllelfPdAkfihlvRdpvdtvlssyvslfgkkresys 155
                      d      +Ps +f +d l+e++P+Ak+++l Rdp ++ ++s+   +g  +++ s
       CCE31513.1  89 DsqacvDTPSAFFTID-LAEAYPEAKVVILNRDP-EKWYESVNGSVGPSMKPTS 140
                      2555557999999998.89***************.9999998777776666666 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.088
                      HHH.HHHHHHHHHHHHHHHHHHHS-TTSEEEEE CS
  Sulfotransfer_3 161 ele.daleewarayerllaararlppdrfldvr 192
                       +e d++  w+++  ++++ r+ +p+dr+l+ +
       CCE31513.1 177 ATEkDKAIAWYNE--SYRRVREAIPADRCLEFS 207
                      5666666667664..344556779999999875 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.5e-05      0.27      65     108 ..       9      52 ..       2      55 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.5e-05
  CPSase_L_D3  65 eakklGfsDkqiaelleeeeeeevrelrkklgilpvykrvDtcA 108
                   ak+   + + i + l+++ +++ r++ ++lgi+  y++vD cA
   CCE31513.1   9 GAKSREVPMRAIVHGLHRTGSKSTRTALHQLGIHKCYHMVDVCA 52 
                  566666666666655566778889*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2289.35
//
Query:       CCE31514.1  [L=421]
Description: related to catecholamines up protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-56  190.8   8.0    1.8e-54  185.2   8.0    2.1  1  Zip       ZIP Zinc transporter
  ------ inclusion threshold ------
        1.6    8.5   6.2       0.27   11.0   0.5    2.5  3  DUF2157   Predicted membrane protein (DUF2157)


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.2   8.0   2.1e-58   1.8e-54       7     332 ..      85     417 ..      84     418 .. 0.83

  Alignments for each domain:
  == domain 1  score: 185.2 bits;  conditional E-value: 2.1e-58
         Zip   7 aiiaililsllgllgpllvpkiskllsklllslllafavGvllgtaflhLlPealealeesqleeehth........plagllvllGflllllvekllt 97 
                 a+ a+l++ ++++ + +l+ ++  + +   ls+++afavG llg+ ++hLlPe + + ++++      +        ++ gl++l+Gf+++  ++k l+
  CCE31514.1  85 AVNALLATLYISGPPNFLLALCPTNIDPASLSVMVAFAVGGLLGDTLFHLLPEIFLGEDQEERAR---FvlvepnrnLVLGLAILVGFMVFVAMDKGLR 180
                 68899**************************************************9999986544...344789999********************** PP

         Zip  98 mivekksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkeklaslkvraiilllglilH 196
                 ++ ++      + +++ + +  +s+ +++  ++ v++ e   +           ++ ++++k++k+  +k+    +++ke   s+k+ ++++l++++ H
  CCE31514.1 181 IVTGG------TGHEHGHGHGVHSHGGDEDAAVVVTSVEGVGE-----------GALKARKKTGKKAGGKKG--PNKEKEVNPSVKLGGYLNLIADFTH 260
                 99999......66666777777777777777777777777643...........333334444444444444..2356667778*************** PP

         Zip 197 sfidGLAlG..vssssstgislfiAvllHelpeelglgaiLlkaglsrkkavllnllfaltaplGiliGilvrs..................isessga 275
                 +++dGLA++  + +s + g ++++Av++He+p+e+g++a L+++g+s++ a+ +++++a++a+lG+liGi+v++                   +  +++
  CCE31514.1 261 NITDGLAMSasFYASPTIGATTTVAVFFHEIPHEVGDFALLVQSGFSKRAAMASQFVTAIGAFLGTLIGIAVQEmsgggaaeagaenwmprnGGLWGTS 359
                 ************************************************************************998777644433333222111111222 PP

         Zip 276 eivsgillalsaGtflYvalvellphEllnek..gssslkqsllqllglllGfalmlll 332
                 +    +ll+++aGtflYv++v ++p Ell+    + ++l+++l q++++ +G+++ml +
  CCE31514.1 360 LTWGDMLLPFTAGTFLYVGTVAVIP-ELLETGprKMEELRKTLVQFAAVAVGAGIMLYI 417
                 3333579******************.***99988789*******************988 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.15   1.3e+03      66      84 ..       6      23 ..       1      94 [. 0.70
   2 ?   -1.9   0.1      0.29   2.6e+03      44      54 ..     163     173 ..     113     176 .. 0.62
   3 ?   11.0   0.5     3e-05      0.27      65     112 ..     314     415 ..     308     418 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.15
     DUF2157 66 kfllllvllllslllgavl 84
                ++++ l+l+++ +l+g+ l
  CCE31514.1  6 RLAVSLALVAV-FLAGYSL 23
                44443333333.3333322 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.29
     DUF2157  44 lllglGlilfv 54 
                 l++++G ++fv
  CCE31514.1 163 LAILVGFMVFV 173
                 22333333333 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 3e-05
     DUF2157  65 vkfllllvllllslllgavlwrdr......................................................rvpprlgeallllaalllgaa 109
                  +f+ +++++l++l+++av++                                                         r+ + l++ l+ +aa+++ga+
  CCE31514.1 314 SQFVTAIGAFLGTLIGIAVQEMSGggaaeagaenwmprngglwgtsltwgdmllpftagtflyvgtvavipelletgpRKMEELRKTLVQFAAVAVGAG 412
                 69999*********999988765599************************************************************************* PP

     DUF2157 110 ial 112
                 i+l
  CCE31514.1 413 IML 415
                 *98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2898.48
//
Query:       CCE31515.1  [L=500]
Description: uncharacterized protein CPUR_05368 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-05   24.5   0.0    2.7e-05   23.7   0.0    1.4  1  Bul1_C      Bul1 C terminus
    7.7e-05   21.6   0.0      0.027   13.3   0.0    2.3  2  Bul1_N      Bul1 N terminus
  ------ inclusion threshold ------
       0.98    9.9   5.0        2.3    8.7   0.2    3.3  3  Arrestin_C  Arrestin (or S-antigen), C-terminal domain


Domain annotation for each model (and alignments):
>> Bul1_C  Bul1 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   4.6e-09   2.7e-05     218     269 ..     378     431 ..     317     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 4.6e-09
      Bul1_C 218 evnvnLelnedl..ketlvPsFesClcsRlYcvrvnikfdnhigsakidvPvsv 269
                 e  v++ +n  l  k+   P+F sCl+sR Y +  ni     + ++++ +P+++
  CCE31515.1 378 EAVVEVPFNIPLsnKKIFLPTFHSCLISRTYTLHLNISVGPTNTTMSLAIPLQI 431
                 3335555555442167799********************************998 PP

>> Bul1_N  Bul1 N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0   0.00061       3.6     162     202 ..      36      74 ..      17      95 .. 0.69
   2 !   13.3   0.0   4.4e-06     0.027     257     304 ..     102     155 ..      99     177 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00061
      Bul1_N 162 silkeytsGDlinGyviieNkssepvkFemfyvtLegtisv 202
                   +k ytsG +i G+ +++  ++++ +F+ f + + g++ +
  CCE31515.1  36 FNSKVYTSGSTIAGHAVVQ--TQRNTPFDDFDIIFSGVAAT 74 
                 35789*************6..67778899999999998765 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 4.4e-06
      Bul1_N 257 LdneriLePgtkYKkFFtFklPekLLDvtCkhellk......HlllPPslGidk 304
                 L++++++  g++Y   F F +P++L   +C+h+ ++      Hl lPP++G   
  CCE31515.1 102 LPDNKVFSAGKTYTIPFNFVVPHQLTIGACNHKCSSpavrdcHLRLPPTVGYWE 155
                 899*****************************9985455555*********765 PP

>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.5     0.081   4.8e+02       5      31 ..      30      56 ..      24     210 .. 0.66
   2 ?    8.7   0.2   0.00038       2.3      73     130 ..     375     432 ..     304     435 .. 0.66
   3 ?   -0.9   0.0      0.35   2.1e+03      54      92 ..     442     479 ..     434     491 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.081
                EEEEEEES-SEEETT--EEEEEEEEE- CS
  Arrestin_C  5 vsleaslpkkgyvpGetipvtvkidnd 31
                +++e ++++k y+ G+ti  +  ++ +
  CCE31515.1 30 ITVERHFNSKVYTSGSTIAGHAVVQTQ 56
                445556666666666666555444433 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00038
                 -TTEE.EEEEEEE.--...--B--....---S---EEEEEEEEEEEEEEESSEEEEEEEEEEEEE CS
  Arrestin_C  73 saakdkletevelqiP...eeltp....ssarnvelikvsYklkvkltlsgsggelslelPivlg 130
                 +  ++ +e  v ++iP   +   +    +    + li+  Y+l ++++++ +++ +sl +P ++g
  CCE31515.1 375 VRHEAVVE--VPFNIPlsnK---KiflpTF--HSCLISRTYTLHLNISVGPTNTTMSLAIPLQIG 432
                 34444444..8889995553...3444355..999***************9999*********97 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.35
                 .SEEEEEEEEEE.EEE---B-TTEE.EEEEEEE.----B- CS
  Arrestin_C  54 rsnkkeknvvak.sdsvkvtsaakdkletevelqiPeelt 92 
                 +   ++++v+a+ ++ ++ t+ + + ++    lqiP el 
  CCE31515.1 442 DDLPSFESVMAQdQQLDEDTVLNRRAFQ-RHVLQIP-ELS 479
                 556789999999999999999***9999.7999999.765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3531.48
//
Query:       CCE31516.1  [L=677]
Description: related to putative multispanning membrane protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.7e-205  681.9   0.0   6.9e-205  681.6   0.0    1.1  1  EMP70     Endomembrane protein 70


Domain annotation for each model (and alignments):
>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  681.6   0.0  3.9e-209  6.9e-205       1     518 [.      13     633 ..      13     634 .. 0.92

  Alignments for each domain:
  == domain 1  score: 681.6 bits;  conditional E-value: 3.9e-209
       EMP70   1 pydYydllpfCkpeeekk.........kese..sLgevLrGdrienspyelkfgkdeeckvlCtkkltkeelkklkelIkngYvvnwlvDnLPvatsfv 88 
                 +y+Yydl+++C+p+ ++k         +     +LgevLrGdri++s++el++ kd++c+ lC+k l++++lk+ +elI+ngYv++w+vDnLP+atsfv
  CCE31516.1  13 QYAYYDLPFVCPPTGQHKagtglfsgqS--IslNLGEVLRGDRIKTSDIELSMTKDKPCNFLCSKDLSSDDLKRTQELIRNGYVAEWIVDNLPGATSFV 109
                 69***********944445789998533..456**************************************************************9999 PP

       EMP70  89 s........aaGfplGfvdkee..ekekyylnnhldfviryhkakeee....kkrivgfevepksvkde.ee..eeCp...kea.e.lel...eee... 159
                 +        aaGf+lG+++ ++   k +yyl+nh+++viry++a++++    +k ivgfev+pks+ +  ++  + Cp   +++   l+l     +   
  CCE31516.1 110 TvdgtkkyyAAGFKLGYTEVSPstGKARYYLHNHFTIVIRYRSAAGRAgergEKIIVGFEVYPKSIGSGnRRdsQGCPvdlQNVdGaLQLhmaA-Nktv 207
                 89999999999********98567899****************98888999889*************985424689*98884432234443342.1357 PP

       EMP70 160 .............k..........keeeteipftYsVkwresedvewasRwdlyle.svedskihwfsiinslvivlllslivavillrtlrkdiaryn 234
                                         +e + +ip+tY V++re++++ewa+Rwdly+  + e s+ihw++iinsl+i+ ll++iv++il++t+r+di+ y+
  CCE31516.1 208 dtvpgnaesssrpAlldddhdgsaTEGSINIPYTYAVYFREDNSIEWARRWDLYFVnQEEGSRIHWLAIINSLIICGLLTSIVMIILAKTIRSDIKGYK 306
                 7777777666555055666778887899***************************745566************************************** PP

       EMP70 235 ee.......................................eeee.aqeesgWKlvhgdVfrpPknsllLsvlvGsGvqlllmalvtlllallgflsps 293
                 ++                                       ++++ +++ sgWKl+h+dVfr+P++ +lL+ lvGsG+ql++ma++++ll++lg+l+ps
  CCE31516.1 307 DSlaedgksrlwrkqrsgmrspkekpglleqgddvhnadvsSDDDaFEDVSGWKLLHADVFRTPRFGNLLAPLVGSGMQLMFMAVGLVLLSALGVLNPS 405
                 99*******************************99999887444557799************************************************* PP

       EMP70 294 nrgslltvalllyvllgliaGYvsarlyktfggekwkkntlltalllpgllflvffllnlilwakessgalpfgtlvlllllwflisvPlvliGsllgf 392
                  rg++++v++ l+v++gl++GY+sar++++f+g++++ n+l+tall+pgl+f ++f+lnl++wa++ss+a+pfgtl++++llw++i+vPlvl+Gs+lg+
  CCE31516.1 406 FRGGFISVGVGLFVFAGLFSGYFSARIFRSFDGKDYRANALVTALLFPGLTFGLVFVLNLFVWAQASSTAIPFGTLIVIVLLWLCIQVPLVLAGSYLGY 504
                 *************************************************************************************************** PP

       EMP70 393 kkk.aiehpvrtnqiprqipkqpwylkpllsvllgGilpFgaifielyfilsslwlek..iYylfgfLflvfllliittaevtilltYfqLcaedyrWw 488
                 +k+ ++ehp+rt  ++rqip+q+wy k++ svll+G++pF+++fiel+f+++s+w++k  +Yy+fgfL++v+++l +t+aevt++++Y+qLc+e+++Ww
  CCE31516.1 505 TKAgPWEHPTRTAPMARQIPRQAWYIKSIQSVLLAGLIPFAVVFIELLFVFQSMWQDKsgYYYMFGFLAVVCVILAVTVAEVTVVTMYIQLCSENHQWW 603
                 *99555***************************************************9999************************************** PP

       EMP70 489 WrSflvggssalYvflysiyYyftklkisg 518
                 W+Sflvgg+sal+vf ys++Yyf+kl+i+g
  CCE31516.1 604 WQSFLVGGASALWVFGYSVWYYFFKLHITG 633
                 ****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1011  (0.0563891); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 4612.13
//
Query:       CCE31517.1  [L=514]
Description: related to aromatic-L-amino-acid decarboxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-93  313.8   0.0    1.4e-93  313.6   0.0    1.1  1  Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved do


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.6   0.0   7.9e-98   1.4e-93       1     373 [.      35     426 ..      35     428 .. 0.93

  Alignments for each domain:
  == domain 1  score: 313.6 bits;  conditional E-value: 7.9e-98
                    TTTTGGGSCSSHHSSHH.HHHHHHHHHHCTGGGS--TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--G CS
  Pyridoxal_deC   1 PeylkrlldeaapekaesleqilediekilapgvttwhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpe 96 
                    P+yl  l++++ap ++e++ +i  d +++++pg+t+whsp+f ++++  +s++++++++ a+a   ++f+w  sPa telev+vldwla+ l+lpe
     CCE31517.1  35 PGYLNSLMPTSAPADPEPFSAIRADFHDNIMPGMTHWHSPRFMAFFSCHSSYPAIVAEIYANALSGAYFNWICSPAATELEVIVLDWLAQELNLPE 130
                    99********************************************************************************************** PP

                    GGTCC.T..-EEEEESSHHHHHHHHHHHHHHHHHH.HHHH....HTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-EEEEE--..BTTTBB-H CS
  Pyridoxal_deC  97 eflek.e..gggvlqvgssestllallAartkvik.emke....kgkelkeaeildklvlytsdqahssvekaalvlgvklrvipl..dengklrg 182
                     f +  +  gggvl  ++se++l ++ Aar k +  + k+    ++ke +   +  k+v+  s   hs+ +kaa++lg++  +i++  +++++l g
     CCE31517.1 131 CFKSSgStrGGGVLHGSASEAVLTVMAAARDKYVAaRTKDmpdgEDKEDEMWRVRSKMVVLGSTGTHSCTQKAANILGLRFETIRAheEDSFSLQG 226
                    999985489*****************99999976413332111234454556799*************************8888772245799*** PP

                    HHHHHHHHHHHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHH.......CT-EEEEE-TTGGGGGGSGGGGGGGTTGGGESEEEEECCCCTS-- CS
  Pyridoxal_deC 183 aalekaieedkekGlipffvvatlGttvlgaFddlkelgdicek.......ydlwlHvDAAyaGsaficpeirhllkgieradSitvnphKlllvl 271
                     +l  ++e+ +++Gl pff +at+Gtt ++a dd + ++d +++        d+w+HvDAA aGsa+i pe++h  k      S+++nphK+ll  
     CCE31517.1 227 RHLTTKLEQLEARGLEPFFLTATMGTTDMCAVDDFEGIADSLKQrlaggryPDIWVHVDAAMAGSALILPEHKHNTKAFHNFSSFNFNPHKWLLTG 322
                    ******************************************999*****99******************************************** PP

                    SS-EEEEESSCCGCHHHH-EEECCCT.TT.TTTSEECCCGSSSSSGHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT.EEECSTT CS
  Pyridoxal_deC 272 ldcsalivkdkealqqalqleaeYLehed.sdvaadlgtkaiplsrrvrilklwfvlralGveglqnqirksvelakyleklirkder.feivaev 365
                     dcsa +v+ + +l ++l++++ YL+++   d ++++++++i l++r+r+lklwfvlr+ G+ glq+++r+ + +a+ le ++r + + f + +  
     CCE31517.1 323 YDCSATFVRSRADLVNTLSIKPAYLRNRPsDDDTTEYRDWQIALGKRFRSLKLWFVLRSHGISGLQAHVRNGISMAESLELKLRTRPDlFTVFTPA 418
                    **************************766667899*****************************************************99998888 PP

                    BSSEEEEE CS
  Pyridoxal_deC 366 elglVcFr 373
                     ++lV  r
     CCE31517.1 419 RFALVTLR 426
                    88888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3607.92
//
Query:       CCE31518.1  [L=473]
Description: related to aromatic-L-amino-acid decarboxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-90  302.2   0.0    4.7e-90  302.0   0.0    1.0  1  Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved do


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.0   0.0   2.6e-94   4.7e-90       9     373 ..       2     385 ..       1     387 [. 0.92

  Alignments for each domain:
  == domain 1  score: 302.0 bits;  conditional E-value: 2.6e-94
                    CSSHHSSHH.HHHHHHHHHHCTGGGS--TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCC.T. CS
  Pyridoxal_deC   9 deaapekaesleqilediekilapgvttwhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeeflek.e. 102
                    +++ap ++e++ +i  d +++++pg+t+whsp+f ++++   +++++++++ ++  n ++f+w +sPa telev+vldwla+ l+lpe f +  + 
     CCE31518.1   2 PTSAPVNPEPFSAIRADFHDNIMPGMTHWHSPRFMAFFSCHGEYPTIIAEIYSNFLNGAYFNWISSPAATELEVIVLDWLAQELNLPECFKSSgSt 97 
                    7899************************************************************************************99998548 PP

                    .-EEEEESSHHHHHHHHHHHHHHHHHHH.HHH....HTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-EEEEE--..BTTTBB-HHHHHHHHH CS
  Pyridoxal_deC 103 .gggvlqvgssestllallAartkvike.mke....kgkelkeaeildklvlytsdqahssvekaalvlgvklrvipl..dengklrgaalekaie 190
                     gggvl  ++se++l ++ Aar k +    k+    ++ke +   +  k+v+  s   hss +kaa++lg++  +i++  +++++lrg +l  ++e
     CCE31518.1  98 rGGGVLHGSASEAVLTVMAAARDKYVAArTKDmpdgEDKEDEIWRVRSKMVVLGSTGTHSSTQKAANILGLRFEAIRAyeEDSFSLRGRHLATKLE 193
                    9*****************999999764303321111233333456899************************888876335679************ PP

                    HHHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHH.......CT-EEEEE-TTGGGGGGSGGGGGGGTTGGGESEEEEECCCCTS--SS-EEEEE CS
  Pyridoxal_deC 191 edkekGlipffvvatlGttvlgaFddlkelgdicek.......ydlwlHvDAAyaGsaficpeirhllkgieradSitvnphKlllvlldcsaliv 279
                    + +++Gl pff +at+Gtt  +  dd + ++d++++        d+w+HvDAA aGsa++ pe++h  k      S+++np K+ll   dcsa +v
     CCE31518.1 194 QLEARGLEPFFLTATMGTTDFCVIDDFEGIADVLKQrlaggryPDIWVHVDAALAGSALMLPEYKHNTKAFHNFSSFNFNPQKWLLTGYDCSATFV 289
                    ******************************************99**************************************************** PP

                    SSCCGCHHHH-EEECCCT.TT.TTTSEECCCGSSSSSGHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT.EEECSTTBSSEEEEE CS
  Pyridoxal_deC 280 kdkealqqalqleaeYLehed.sdvaadlgtkaiplsrrvrilklwfvlralGveglqnqirksvelakyleklirkder.feivaevelglVcFr 373
                    + + +l+++l++++ YL+++   d ++++++++i l++r+r+lklwfvlr++G+ glq+++r  + +a+ le ++r + + f + +   ++lV  r
     CCE31518.1 290 RSRADLINTLSIKPAYLRNRPsDDDTTEYRDWQIALGKRFRSLKLWFVLRSYGISGLQAHVRSGISMAESLERKLRTRPDlFTVFTPASFALVTLR 385
                    ******************766667899*****************************************************9999888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3436.11
//
Query:       CCE31519.1  [L=859]
Description: related to sulfatase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-19   68.4   0.5    2.4e-18   66.6   0.5    1.8  1  Sulfatase     Sulfatase
    1.9e-05   24.5   0.1      3e-05   23.8   0.1    1.3  1  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp
  ------ inclusion threshold ------
      0.012   14.3   0.0      0.017   13.8   0.0    1.1  1  DUF229        Protein of unknown function (DUF229)


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.5   4.1e-22   2.4e-18      31     307 ..     428     717 ..     358     719 .. 0.72

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 4.1e-22
                 HHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTT..............HHCTTTS-HH.HHHHHHTT-EEEEEEES-SCCSGGGSHHC CS
   Sulfatase  31 rlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgg..............gglpqteatL.pellkeaGYntaaigkwhlgwssrqsvyk 114
                 + ++ g++f+n+y++++++ +s+  +l g +p  ++   n e+ +              +++  +++ + +e  k  G++  a  kw+  ++   ++  
  CCE31519.1 428 SKRRGGINFNNAYTSSTYTLKSMVGTLCGSPPLIAD--WNLEYVHelptpclphvfdamNHIDVSHDDIkGEAAKHGGFDF-ASDKWQSLFMQSATMEF 523
                 34699*****************************99..3444443344444444444443333333333233333334443.44455544444444322 PP

                 ......CTTTSEEEETSSSCHHTCCCCCCCCCECTCCC....................................TTTTCSHHHHHHHHHHHHH.HCCC. CS
   Sulfatase 115 ......nrgfdrflgfptgsaalkdpekseyngevlrv....................................ppeggysddrlldealefl.larn. 169
                                                                                           +  +  + d l d       la++ 
  CCE31519.1 524 dhqkvlM------------------------------EnmgyldgnmltkeylqgkqdqapshgvadlpevnyfSIPETPLEDYLRDA----FmLAKEr 588
                 4444444..............................245555555555555555555555555666674444422233333333333....2444444 PP

                 TSSEEEEEEE-TTSSST..CTCGGHTCCGSTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTC CS
   Sulfatase 170 dkpfflylatlapHapp..eapdeyakkyatffddgseaarqlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkga 266
                 ++  fl+  t+ +H+p+  + ++ y+++ +++ +       + l++yln++   D+ +g+vla L+++g++++tlvv+++Dhg s+ e  ++l    + 
  CCE31519.1 589 QERVFLTHLTSTSHHPFglPEEETYVAMANDGAM-------EDLSKYLNTIGFEDKWLGKVLAVLDDQGVANETLVVMVGDHGLSMPE--NDLNSAYY- 677
                 9999999999999999877888888888766665.......9********************************************55..77777777. PP

                 SSSHHHHBEEEEEEETTTSHCEEECSEEEGGGHHHHHHHHT CS
   Sulfatase 267 nayeggtrvPllvwwpgekaprvseelvshiDlfptildla 307
                 n + g ++vPl++  p+    +v+++++s   ++pt+ldl+
  CCE31519.1 678 NPNVGNLHVPLVLSHPKLPVLHVDDAVTS-LSILPTLLDLL 717
                 ****************9999966666666.89*******96 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   5.1e-09     3e-05     185     236 ..     600     667 ..     530     702 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 5.1e-09
                   HHHHHH-.TTSHH...............HHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EE CS
  Phosphodiest 185 tvgHkfG.pdspe...............vedalrrvDkaigdLlealderglsaetniilvSDHGmad 236
                   t++H fG p++++                ++++   Dk++g+ l+ ld++g+++et ++ v+DHG + 
    CCE31519.1 600 TSHHPFGlPEEETyvamandgamedlskYLNTIGFEDKWLGKVLAVLDDQGVANETLVVMVGDHGLSM 667
                   578888843333377777777888877788999999*****************************875 PP

>> DUF229  Protein of unknown function (DUF229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.8e-06     0.017     297     345 ..     594     666 ..     572     696 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-06
      DUF229 297 ffwsnslshdkfnlleal........................DedllkylkklekkgllentlvlllsDHGlr 345
                 +++ +s sh+ f l+e                          D+ l k+l  l+++g+ ++tlv++++DHGl 
  CCE31519.1 594 LTHLTSTSHHPFGLPEEEtyvamandgamedlskylntigfeDKWLGKVLAVLDDQGVANETLVVMVGDHGLS 666
                 566666666666666666666666666666666667777777*****************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 5839.35
//
Query:       CCE31520.1  [L=81]
Description: uncharacterized protein CPUR_05373 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 598.40
//
Query:       CCE31521.1  [L=600]
Description: probable glucan 1,4-alpha-glucosidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-89  300.6   0.0    2.1e-89  300.4   0.0    1.0  1  Glyco_hydro_15  Glycosyl hydrolases family 15
    8.1e-24   83.4   0.0    1.6e-23   82.4   0.0    1.5  1  CBM_20          Starch binding domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.4   0.0   2.3e-93   2.1e-89       2     446 ..      48     464 ..      47     466 .. 0.94

  Alignments for each domain:
  == domain 1  score: 300.4 bits;  conditional E-value: 2.3e-93
                     HHHHHHHHCBCSTTSSBTTS-TT-B-S-S-BSSSB--SEEHHHHHHHHHHHH.......HHHHHTTT-HCCHHHHHHHHHHHHHHCTS-BTTB-T CS
  Glyco_hydro_15   2 vrldlylrnvktlilleqnpvtGlliASpstsdpDYrytWvRDsvyvilavwglgyrdedrakayeleqslvklmrglleamvrqagkvekfket 96 
                     ++l+++l+n+++ +  + ++++G++iASps++dpDY++tW+RD+++++++++        +  + + +  l+ +++ +++ +++ +  +++++  
      CCE31521.1  48 ISLQGVLANIGSEGSKAGGAASGVVIASPSKQDPDYFFTWTRDAALTLKVLV--------EDLIAG-KDFLRPTIQHYVSSQAKLQTVSNPSGGP 133
                     57899***********************************************........455555.678888899*****************87 PP

                     TSCGGGG--EE-TTS-B--S-..-S--BTTHHHHHHHHHHHH....HCTT..HCHCCCCHHHHTHHHHHHHHHHHTTS-EE-TTS--ECEEHH.. CS
  Glyco_hydro_15  97 qstkgLhakyftktgstvvGddewghlQlDatslyllalaqm....tasg..lqiistldevafvqnlvdYieaayktpdfglWEenqgeselna 185
                     + + gL++++f ++ ++ +    wg++Q+D++ l++++l+ +    +++g   ++++t+++v  + +++ Y  a++++++f+lWEe++g s++  
      CCE31521.1 134 DTG-GLGEPKFHVNLTALTEP--WGRPQRDGPPLRATTLVIYakwlLSNGgtVEATRTVWPV--ISKDLAYAVAYWNSTGFDLWEEVHGLSFF-- 221
                     666.*****************..*******************9999888889999*******..*****************************.. PP

                     HHHHHHHHHHHHHHHHHHCT-HHHHCCHHHHHHHHHHHHHSTTT..GGGEETTCCECECSCH.....HHHTTS--S-BCHHHHHHHHCS-TTS-T CS
  Glyco_hydro_15 186 ssvgmakAlleaideadlfgakgdaqlvektkdeilnklqgkygckrgfwplfntylildgsfaedkeqvqeyrealdasllllpelyfvpaddv 280
                     ++++ ++Al++++++a+++g  +++  +++t++++l+         ++fw +++ ++  + +  +d+      r+++da+ l++++++f+pa+ +
      CCE31521.1 222 TIAATHRALVQGAALAKDLG--EECPYCDSTASQVLCLA-------QSFWSSNG-HIDSNLN-TNDGL----RRSGKDANSLIASIHTFDPAAVC 301
                     ********************..9**************99.......9***9655.4444444.33444....6********************** PP

                     T-TT-TTTSHHHHHHHHHHHHHHHHHSGGGTT-STTS...--SBTT--CGSSSBSCT--BHHHHHHHHHHHHHHHHHHHHHTE-EEEECCCHHHH CS
  Glyco_hydro_15 281 deeyqnpqsprllaqslyildsllsegflavgeldpl...vrRysedvkpdklglsGrpyylctlwtvetlldelyekagkgrlwglvryalgll 372
                      + +++p+s+r+la++++++ds+++ + ++ g+ +++   v+Ry edv++     +G+p+yl+tl+++e+l+d++y+++   +++ + + +lg++
      CCE31521.1 302 ADATFQPCSSRALANHKAVVDSFRAIYGVNAGRGAGKaaaVGRYAEDVYQ-----NGNPWYLTTLAAAEQLYDAVYQWNRI-GFLSIDDVSLGFF 390
                     *********************************99999***********8.....***********************988.66*********** PP

                     HHHTTTTTGGGSSEEE.TCHHHHHHHHHHHHHHHHHHHHHH.S-TTS---SEE-TTT--EESSTT-HHHHHHHHHH CS
  Glyco_hydro_15 373 eklveskqltvGlppe.resvisaplpveeladliveavee.dnslgvLteevdvylgeliraqpllfsealllri 446
                     ++l+ s  ++ G++ + ++++ +++ +v ++ad ++ +v+  +++ g L+e++d+++g +++a +l++s+a++l++
      CCE31521.1 391 RDLAPS--VAIGTYEKgSATFSTIVAAVSTYADGFLAIVQRyTPREGALAEQFDKESGVPRSAADLTWSYASFLST 464
                     ******..*****************************************************************987 PP

>> CBM_20  Starch binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   1.8e-27   1.6e-23       4      93 ..     502     591 ..     499     594 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 1.8e-27
      CBM_20   4 VtFkvnattqlgesvyivGsiseLGnWnpkkavklsaseqtssyplWsttvslpagtkieYkyikkdsdgsvtWesgenrsltvpssgss 93 
                  tF+++++t +ges+y++Gs  eLGnW p  +++lsa+ +t+++p+Ws+ v++pag+ +eYky+kk+ +gs++W  gen + t ++++ s
  CCE31521.1 502 MTFNIKVQTLFGESIYLTGSRDELGNWPPGAGIPLSAAGYTAENPVWSGRVQFPAGVYFEYKYVKKTLSGSIVWLRGENLKATSSAGCGS 591
                 69***99**************************************************************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4363.68
//
Query:       CCE31522.1  [L=296]
Description: uncharacterized protein CPUR_05375 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2452.34
//
Query:       CCE31523.1  [L=183]
Description: uncharacterized protein CPUR_05376 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00053   19.8   0.0     0.0012   18.6   0.0    1.5  1  DUF4322   Domain of unknown function (DUF4322)


Domain annotation for each model (and alignments):
>> DUF4322  Domain of unknown function (DUF4322)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.9e-08    0.0012      33      59 ..      13      39 ..      11      42 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.9e-08
     DUF4322 33 akvLvsaaLlndsienkskaynvspqt 59
                ++vLvsa+Ll  s+e+k   y  s++t
  CCE31523.1 13 GHVLVSACLLPPSVESKEVLYSDSDRT 39
                689*******************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1560.92
//
Query:       CCE31524.1  [L=896]
Description: uncharacterized protein CPUR_05377 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-10   39.9   0.0    5.3e-10   39.2   0.0    1.3  1  RVT_1      Reverse transcriptase (RNA-dependent DNA polymeras
      0.001   19.3   0.0     0.0026   18.0   0.0    1.6  1  RT_RNaseH  RNase H-like domain found in reverse transcriptase
  ------ inclusion threshold ------
      0.051   13.6   2.6        0.1   12.7   2.6    1.5  1  DUF1192    Protein of unknown function (DUF1192)
       0.51   10.7   3.7        1.2    9.6   3.7    1.5  1  SIMPL      Protein of unknown function (DUF541)
        6.7    6.6   5.7         10    6.0   5.7    1.2  1  TFIIA      Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.5e-13   5.3e-10      54     182 ..     517     620 ..     503     656 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1.5e-13
                 ........HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHT CS
       RVT_1  54 avedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellr 152
                 a++d+l+ +++ ++a++++k Dlk+aF  +p++   r+l  f+ +                         +++y+++ lp+G+ ++P++fnlf + l  
  CCE31524.1 517 ALHDMLDVVRQAGRACHIVKKDLKDAFRMIPVAMSVRRLLGFTWQ-------------------------GRSYTENCLPFGLRTAPFIFNLFAEALHW 590
                 446777888889*********************************.........................99***********************9999 PP

                 T-T......TEEECTTEEEEEESSHHHHHH CS
       RVT_1 153 elrkrakgvtllrYaDDililskskeelqe 182
                  l+   ++v l +Y DD++++    +++ +
  CCE31524.1 591 ILEVLLPNVLLRHYLDDFIFVLPAGDSHRA 620
                 999999*************99988555332 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   7.2e-07    0.0026       7      83 ..     765     848 ..     761     857 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.2e-07
                 EEEEEECTEEEEEEEEEETTE.........EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS--EEEE-SS--TT CS
   RT_RNaseH   7 iletDAsddgigavLsqreedge.......erpiafaSrklsgaernystiekellAivaalkkfrhylqgrkftvitDhknlk 83 
                 +l+tDAsd gig+  +  +  ++           + + r+ ++ e   ++   e++A+  a+ ++ h  +++   ++tD++  +
  CCE31524.1 765 HLFTDASDLGIGGFFYRGDVAQSdwrsalpLPQAQAFARARTANELDHHINVTEIVAVAVAVATWAHRWHHATLVIHTDNTTAQ 848
                 79***************554444544555544456778999**************************************98765 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.6   2.9e-05       0.1       7      54 ..      43      90 ..      38      93 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
     DUF1192  7 kkptheigqDLslLSveELeerIalLeaEIaRleaaiakkkasraAAe 54
                 +p+ + + DL+l   +EL++r a+ ea IaR++a  a+++a  a A 
  CCE31524.1 43 APPSPAPPLDLQLVERQELQARLAAAEAAIARAKADAAEADARIARAS 90
                444577899*************************99998888644443 PP

>> SIMPL  Protein of unknown function (DUF541)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.7   0.00032       1.2     121     185 ..      57     125 ..      48     153 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00032
       SIMPL 121 delrdeareeAvkdArakAealAkalgvklgkv.vsise......sgsnp.........yappapamaaaaaaaasaatpf 185
                 + ++ +ar +A ++A+a+A+a A+++++++ +  ++ +           +         +      ++ ++   +++++pf
  CCE31524.1  57 ERQELQARLAAAEAAIARAKADAAEADARIARAsAESRApaatcaM---QptpipqpvpS------QQPMP---SQQPMPF 125
                 344559*********************8885443333324333332...03333333220......22211...2222222 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.7    0.0029        10     152     234 ..      62     150 ..       3     228 .. 0.46

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0029
       TFIIA 152 qqiaaqplqqvvqq......sqgsaaqssvaalqaq.sqqaqalaepqqqlekqqqq.qqqqqqqqqqqqvqqqqqeesqqaqqa.sqe.qva 234
                 q+++a++ + +         + + +a +s+++ +++ ++++q ++ pq    ++qq+   qq++++qq    qq +  + q++ + +q  +++
  CCE31524.1  62 QARLAAAEAAIARAkadaaeADARIARASAESRAPAaTCAMQPTPIPQPV--PSQQPmPSQQPMPFQQPMPFQQPM--PFQQPMPfPQPmAFP 150
                 22222221111111111111222222223322222223333333333333..223333334444444442222222..111111111112111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (896 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 6234.03
//
Query:       CCE31525.1  [L=330]
Description: related to integral membrane protein PTH11 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2332.63
//
Query:       CCE31526.1  [L=432]
Description: related to OYE2-NADPH dehydrogenase (old yellow enzyme), isoform 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-75  254.0   0.0    3.1e-75  253.6   0.0    1.2  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil
    0.00094   19.0   0.0     0.0014   18.4   0.0    1.1  1  DUF1848       Domain of unknown function (DUF1848)


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.6   0.0   3.5e-79   3.1e-75       1     341 [.      37     405 ..      37     406 .. 0.85

  Alignments for each domain:
  == domain 1  score: 253.6 bits;  conditional E-value: 3.5e-79
                   CCCS-EEETT..EEESSSEEE----S-TTT........TTCS....HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHH CS
  Oxidored_FMN   1 kLFkPikign..mtLknRivmapmtrlral........dkgn...vledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrk 84 
                   kLF+P+ki n   +Lk+R+v+ap+tr r++        +k+n    ++++ +eyy+qra   ++lii+e++ ++ +++g+++ pgi+ +eq+ +w+k
    CCE31526.1  37 KLFQPLKIANgkIELKHRVVHAPLTRNRGTplnpistpEKPNrvwLPNEHIVEYYKQRAT-AGGLIISEGLPPSLEGNGMPGVPGIFLQEQADGWKK 132
                   79******77669*************9987222222222333222346799********9.99********************************** PP

                   HHHHHHHTT-EEEEEEE--GGGS..SCSTCEC..SS.ESSSSSTTT-..............S...CS.-EE--HHHHHHHHHHHHHHHHHHHHTT-S CS
  Oxidored_FMN  85 lteavhengskvvvqlwhlGreakseyladqevdspsdpvaldaqee.............esaeevy.kkeltkeeikqliqefveAAkraieAgfD 167
                   ++eavh++g+ +  qlwh Gr+   +   ++   +ps +   d++ e             +     y ++e+t+ +i  +i+++ +AA++a++AgfD
    CCE31526.1 133 VVEAVHAKGGIIYAQLWHSGRANIPQLTGTPI-MAPSSV-PWDDKNEcfayppphtstpvK--LADYpPHEMTQADIDRTIDDYCKAAALAMAAGFD 225
                   *********************99777777766.555532.223222346888886655422..233669**************************** PP

                   EEEEEE-CTSHHHHHH-TTT----STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHHHHHHHHHCHCCEEEEEEETT-SSS CS
  Oxidored_FMN 168 gVeihganGYLlnqFlspksnkrtDeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaetaqkivllkelekrlkdgkklalvh 264
                   g+e hg nGYL++qFls +snkr D+ygGs e+R++F+++++++  + vg+e +++Rl p++++++   +        +  el+  ++   +l++v 
    CCE31526.1 226 GIELHGGNGYLPEQFLSSNSNKRNDKYGGSPEKRCKFVIDLMEKLADTVGQENLAIRLTPFGLFNQARSEQRLETWGHVCRELKSSFP---RLSYVS 319
                   *****************************************************************9887765555889999*******...****** PP

                   SSTTS-TTTTHHHCCTT.HHH........HHHCCCH.SSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCG CS
  Oxidored_FMN 265 aaeprkrgagsvrteqe.knt........efvkevw.kkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpl 341
                    +epr  + +s   +q+  +         +  + +w + p++ +g+++d++    +v+ g+ d   +gR+f+++pdlve+l++glpl
    CCE31526.1 320 FVEPRYEQVFSEAEKQKfLDSwqlptvdlSVFRDIWgDTPFLSAGGFDDKN-SWGVVESGRYDGLLYGRYFISNPDLVERLRQGLPL 405
                   *****9999988887655443566777779999999457***********9.7888999999999*******************986 PP

>> DUF1848  Domain of unknown function (DUF1848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.6e-07    0.0014      97     167 ..     262     334 ..     252     348 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.6e-07
     DUF1848  97 erietfkelseklgkerviwRyDPilltekltvelhlekfeklaeelkgytekv.viSfvdl.ykkvkrnlkk 167
                  +i+ +++l++++g+e++++R  P  l ++ + e+ le+  ++++elk    ++ ++Sfv++ y++v ++ +k
  CCE31526.1 262 FVIDLMEKLADTVGQENLAIRLTPFGLFNQARSEQRLETWGHVCRELKSSFPRLsYVSFVEPrYEQVFSEAEK 334
                 57999*******************************************877776379****99**99888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3131.97
//
Query:       CCE31527.1  [L=510]
Description: uncharacterized protein CPUR_05380 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3785.84
//
Query:       CCE31528.1  [L=168]
Description: uncharacterized protein CPUR_05381 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1339.18
//
Query:       CCE31529.1  [L=174]
Description: uncharacterized protein CPUR_05382 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00051   20.3   0.1    0.00083   19.6   0.1    1.3  1  Retrotrans_gag  Retrotransposon gag protein
  ------ inclusion threshold ------
      0.027   14.3   0.0      0.035   14.0   0.0    1.1  1  Gag_p24         gag gene protein p24 (core nucleocapsid prote


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   9.3e-08   0.00083      46      88 ..      60     104 ..      50     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 9.3e-08
  Retrotrans_gag  46 kdqleeelsslrQ.gtesvreYvtrfktladqlde.vlteeakie 88 
                      ++++ el++lrQ  +es+++Y+ rf+  ++++++   +e++k+e
      CCE31529.1  60 VKLAQLELRRLRQaSDESFSDYLVRFEAQMARAHRlDAPEDEKVE 104
                     5678889***************************98777777776 PP

>> Gag_p24  gag gene protein p24 (core nucleocapsid protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.9e-06     0.035      90     153 ..      33      96 ..      24     114 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.9e-06
                 HHHHHHS--HHHHHHHHHHHHHHHHHHHH--S.-CCC----TT--HHHHHHHHHHHHHH----H CS
     Gag_p24  90 qsqlmqnvevleqvrrlillalekiprsgsktesladirQGpkEpyqdfvaRlekalrkelade 153
                 q+ql +  e +  ++r++++ l+ +      + +l  +rQ ++E++ d+  R+e  + +    +
  CCE31529.1  33 QKQLPYYFESGVALERNAVAFLNHLEAVKLAQLELRRLRQASDESFSDYLVRFEAQMARAHRLD 96 
                 4555555677777888888889999988888889*******************99887765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1306.30
//
Query:       CCE31530.1  [L=418]
Description: related to glucan 1,3-beta-glucosidase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-06   28.2   0.9    2.1e-06   27.6   0.9    1.4  1  Glyco_hydro_17  Glycosyl hydrolases family 17


Domain annotation for each model (and alignments):
>> Glyco_hydro_17  Glycosyl hydrolases family 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.9   1.1e-10   2.1e-06     154     288 ..     176     291 ..      23     302 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.1e-10
  Glyco_hydro_17 154 kpvvdpivvflagtnspllvnvyPYfvysndpsnvsLdyalfqkqslvndnglayrnlfDaildavyaaqekkGgtdielvvsEtGWPsdGstga 248
                        vd + v+ +++ + ++++v+  f   ++       y ++++++ +     +   lfD+ +da  aa +  G     ++v EtGWP  G    
      CCE31530.1 176 VGHVDTWDVWTNSSIKSVIDAVD--FLGVDE-------YPYYENDKGND--IKNAGHLFDKAFDATVAAAN--GK---PVWVTETGWPYTGP--- 251
                     34589999999999999999999..666666.......88998877763..456678********888765..54...48***********9... PP

  Glyco_hydro_17 249 slenaatyveNlikkvkeGtpskpgkgietyvfalFdEnq 288
                     + ++ +++veN++  + e  ++k    ++t+ ++l d n 
      CCE31530.1 252 TWDQGVASVENAKYYWDEVGCRKLFNKVPTFWYNLRDSNP 291
                     99*******************************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       874  (0.0487478); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3108.08
//
Query:       CCE31531.1  [L=428]
Description: probable fumarylacetoacetate hydrolase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-56  190.2   0.0    4.9e-56  189.8   0.0    1.1  1  FAA_hydrolase    Fumarylacetoacetate (FAA) hydrolase family
    8.3e-31  106.4   0.0    1.5e-30  105.6   0.0    1.4  1  FAA_hydrolase_N  Fumarylacetoacetase N-terminal


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.8   0.0   5.5e-60   4.9e-56       3     217 ..     130     421 ..     129     422 .. 0.91

  Alignments for each domain:
  == domain 1  score: 189.8 bits;  conditional E-value: 5.5e-60
                    EEEEEE--SHHHHHTTT.......-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE.......................EEEEEEEESS..-B- CS
  FAA_hydrolase   3 vcdglnyaehvreagka......aeeppdrhiplepvfflkrasslvgpgdpirrPag.................sekldyEvELavvigk..plr 73 
                    ++d+++ ++h+ ++g++      a +p+++h p+   ++++rass+v +g+pirrP+g                 +ekld E+E++++i +  +l+
     CCE31531.1 130 YTDFYAGKHHAYNVGSLfrgpddALQPNYTHLPV---AYHGRASSVVVSGTPIRRPWGqilknpkaepkvpilsaCEKLDLELEMGMFICRenQLG 222
                    79***************99999999999998888...******************************************************99999 PP

                    -T--HHHHHTTEEEEEEEEEEE-SBGGG---.HHHHHHTGGGEEEEEE-B--B-.STT---S.......................S-EEEEEE... CS
  FAA_hydrolase  74 evlsveeAedaiaGytllnDvsaRdlqaeekaplgwflgksfdtftpiGpwivtpdeledpe.......................dlelrlrv... 143
                    ++++++eA+++i+Gy+l+nD+saRd+qa+e++plg+f++k+    t+i++w+v +d+le  +                       d++l++ +   
     CCE31531.1 223 HPIPIAEADKYIFGYVLMNDWSARDIQAWEYIPLGPFTAKNL--GTTISAWVVLADALEGCKaagiandhallpyleektkenclDIHLEVDLttp 316
                    99****************************************..***************966789999***************8855555555779 PP

                    ..TTEEEEEEEGGGTTTSHHHHHHH.HHHHH-B-TT-EEEEEES...........................S--EE--TT-EEEEEE........T CS
  FAA_hydrolase 144 ..ngeevqdsntkdmifspaeliah.lsagltLepGdliltGTpsgv.........ga...........eeeslkflkdgDevevei........e 208
                      +++++++sn +++++s +++iah +  g+ L+pGdl+++GT++g          ++           ++e+++fl+dgD+++++          
     CCE31531.1 317 agEKTTISKSNSRNLLWSWPQMIAHhTITGCNLRPGDLLGSGTITGDtpgsegsllEQtqggktkvqlqGGEERTFLQDGDTLTLRGwagkegalV 412
                    999999**************************************99866666555500555566666667899**********9999999988876 PP

                    TTEEEEEEE CS
  FAA_hydrolase 209 glGelrnrV 217
                    g+Ge++ +V
     CCE31531.1 413 GFGEVTGTV 421
                    699999988 PP

>> FAA_hydrolase_N  Fumarylacetoacetase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.0   1.6e-34   1.5e-30       1     107 []      15     124 ..      15     124 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 1.6e-34
                      TT--EEEEEESSEESEEEEEEETTEEEEHHHHHHTTSS-STGG...SSSGTTSSSSSHHHHHT-HHHHHHHHHHHHHHHBT....SHHHHT-HH CS
  FAA_hydrolase_N   1 qNLPfGvfstkekkeprigvaIGdqvldLsalaeaglfsqleedaeekesvfsqptLnafaalgrevwravRaalqelLsa....eeelrdnee 90 
                      +N+PfG++st++++++r+++aIGd++ldL+a+a+ag fs+ ++d++++ svf+++ Ln+faalgr+ +r vR++lq+++sa    +++l+dn +
       CCE31531.1  15 ANIPFGIISTSADTTKRPAIAIGDYALDLKAFASAGGFSS-SSDIQKHVSVFNHEFLNSFAALGRPFHRLVREYLQSVFSAetkiPQVLKDNVQ 107
                      6**************************************5.7779***********************************9999999******* PP

                      HHHHHEEEGGGEEEE-S CS
  FAA_hydrolase_N  91 lreealvpleevemhLP 107
                      lre alv+++e++ h+P
       CCE31531.1 108 LRETALVKRSEIQNHMP 124
                      ****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3038.46
//
Query:       CCE31532.1  [L=238]
Description: probable maleylacetoacetate isomerase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   32.2   0.0    2.2e-07   31.1   0.0    1.6  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    5.2e-07   29.8   0.0    9.8e-07   28.9   0.0    1.4  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    1.3e-06   28.7   0.0    3.7e-06   27.3   0.0    1.8  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    2.7e-05   24.4   0.0    0.00014   22.1   0.0    2.0  2  GST_N     Glutathione S-transferase, N-terminal domain
    2.8e-05   24.3   0.0    6.1e-05   23.2   0.0    1.6  1  GST_C     Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.017   15.1   0.0      0.031   14.3   0.0    1.4  1  GST_C_2   Glutathione S-transferase, C-terminal domain
      0.041   14.3   0.1      0.061   13.7   0.1    1.2  1  DUF1180   Protein of unknown function (DUF1180)


Domain annotation for each model (and alignments):
>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   8.5e-11   2.2e-07       2      69 ..      12      99 ..      11     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 8.5e-11
                -HHHHHHHHHHHHCT--EEEEEE.H...-TTSHHHHHHHHCTTTSSSEEE-..................CTTE.....EEESHHHHHHHHHH CS
     GST_N_2  2 CPwahRvlialalkglediisvv.vlepkgfekseefprlnprgtVPvLwd..................kdgq.....vineSseIlrylet 69
                + ++ R +i l+lk+++++++++ +l  ++ + s++  +lnp+ +VP+L++                  +  +      i  S + ++yle+
  CCE31532.1 12 SSCSARLRIILHLKNIPFQHIPInIL--QDQQLSDQHRALNPSASVPLLVCplvpghtsseqqdqkpqkH--NeqsgfRIGQSVAAMEYLEE 99
                7899******************9444..66677789***************9999988887776666542..03356688899999988886 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.8e-10   9.8e-07      23      94 ..     151     223 ..     134     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.8e-10
                 HHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHHTCC.CC-HHHHHHHHHHHTSHHHHH CS
     GST_C_3  23 efleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleeaeal.kkfpklkalyervearpkika 94 
                 ++ +  +++ l+++e+v k  +g y vgd+lT+AD +l+ ++ + ++ +   ++fp+++++ +++ ++p++ +
  CCE31532.1 151 DWNKALMEDGLRAYEEVAKGTAGRYSVGDSLTMADACLMPAVWNAQRYGVAvERFPTVARVAANLGEHPAVRK 223
                 5667778888999******77777************************5555*****************9965 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.4e-09   3.7e-06       1      72 [.       6     102 ..       6     109 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.4e-09
                 EES-TTSHHHHHHHHHHHHHT--EEEE---...TTTTHHHHHHH-TT--SSEE...............ETTS-..........EEESHHHHHHHHHHHH CS
     GST_N_3   1 LygfpaSpyarrvrlaLnekglpvevvevt...pgehdeellaknplgkvPvL...............eddge..........altdSlaIidyLeely 71 
                 Ly +  S  + r r++L++k++p+++ +++    ++ +++ +a np   vP L               +   +           +  S a ++yLee +
  CCE31532.1   6 LYAYFRSSCSARLRIILHLKNIPFQHIPINilqDQQLSDQHRALNPSASVPLLvcplvpghtsseqqdQ---KpqkhneqsgfRIGQSVAAMEYLEEVH 101
                 788888999*****************999876455559***************8888666666654330...144555556668888888888888887 PP

                 - CS
     GST_N_3  72 p 72 
                 p
  CCE31532.1 102 P 102
                 7 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   5.5e-08   0.00014       2      58 ..       3      59 ..       2      67 .. 0.94
   2 ?   -0.4   0.0      0.61   1.6e+03      61      75 ..      84      98 ..      77      99 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.5e-08
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEE CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLe 58
                 ++ly +++s+ + r+r+ l  k+++++++p++  + ++ s+++  lnp + vP+L+
  CCE31532.1  3 DYILYAYFRSSCSARLRIILHLKNIPFQHIPINILQDQQLSDQHRALNPSASVPLLV 59
                579*******************************9999999**************98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.61
                TEEEESHHHHHHHHH CS
       GST_N 61 gkkltESraIleYia 75
                g+ + +S a +eY++
  CCE31532.1 84 GFRIGQSVAAMEYLE 98
                88899********97 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.4e-08   6.1e-05      35      85 ..     161     211 ..     151     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.4e-08
                 HHHHHHHHH..TSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHH CS
       GST_C  35 lsaleeelk..kqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkaw 85 
                 l a+ee+ k     y vGd lt AD++l p+++ +qr+g+a+  e fp + + 
  CCE31532.1 161 LRAYEEVAKgtAGRYSVGDSLTMADACLMPAVWNAQRYGVAV--ERFPTVARV 211
                 67889999988899***************************9..699998775 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.2e-05     0.031      14      53 ..     163     201 ..     150     222 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
                 CHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS CS
     GST_C_2  14 aldaleahLadspflfGdqptlaDialapflvrlraagpg 53 
                 a +++++    +++  Gd +t+aD++l p ++ +  +g +
  CCE31532.1 163 AYEEVAKGT-AGRYSVGDSLTMADACLMPAVWNAQRYGVA 201
                 444444442.3449******************99877754 PP

>> DUF1180  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   2.4e-05     0.061      13     113 ..      36     129 ..      16     143 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.4e-05
     DUF1180  13 llLaasaadasralspaasspeaepPlppgataaespgkataieaksaqaaeggngsspragsaadaggslavvpelss..ntdkpmtlqrallvlvvv 109
                 +l  ++ +d+ ral+p+as p    Pl pg t++e+ ++ ++ +++++ +   g +s   a+        + v pe+++  ++++p + ++ + vl+++
  CCE31532.1  36 ILQDQQLSDQHRALNPSASVPLLVCPLVPGHTSSEQQDQKPQ-KHNEQSGFRIG-QSV--AAM----EYLEEVHPEIPAlpPSSDPRS-RALVRVLCAI 125
                 455558899*************************88888887.44434444333.333..222....233445555544225778888.7777899999 PP

     DUF1180 110 saav 113
                  a+ 
  CCE31532.1 126 IASD 129
                 8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1784.74
//
Query:       CCE31533.1  [L=608]
Description: related to peptide transport protein [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-77  260.3   8.3    3.9e-77  259.7   8.3    1.3  1  PTR2      POT family
    1.1e-06   27.9  24.8    2.1e-06   26.9  21.4    2.5  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        3.6    6.9  14.9        1.7    7.9   3.2    2.9  2  NnrS      NnrS protein
        7.7    6.4   6.9          2    8.3   1.8    2.4  2  DUF2721   Protein of unknown function (DUF2721)


Domain annotation for each model (and alignments):
>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.7   8.3   8.7e-81   3.9e-77       1     385 [.     165     548 ..     165     566 .. 0.92

  Alignments for each domain:
  == domain 1  score: 259.7 bits;  conditional E-value: 8.7e-81
                 CHHHHHHHHHHHHHHHHCCCCTTTTSS--S--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SSSSCHHHH...............HHHHHHHHH CS
        PTR2   1 fktIllgsiiyaiGhvvlalsaipslksaesagvrvallfigLalIalGtGgiKpnvSafgadqfeekdprersr...............fFsiFyfsi 84 
                 f+tI l   i +i h++l  s+ ps+  +++a+   a+++igL+   +GtG +K+nvS+++a+q e+  pr + r                F +Fy++i
  CCE31533.1 165 FWTIHLAIGISTIAHAILVASSAPSVIVNNNAS--FAAFIIGLLCLCVGTGFFKANVSPLLAEQNEDIRPRIEIRkgqrvivdpavtntrIFLYFYLCI 261
                 8*************************9998887..99**********************************9999999********************* PP

                 HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHCTTTS-EE------SHHHHCCCHSHHHHHCCCHHHHHHHHHHHHHSHHHHHH---HHCCH CS
        PTR2  85 NvGSLlsliitpylqenvgyplgFgipavlmiiallvFllGsrlykkkppkgnvltkvfkvllvaaknkvkkirssagkkklhwldkakeldkalsile 183
                 N+GSL   i+++y+++ vg++l+F+ip++l++i+ lv++  ++ yk  pp g+vl+k  ++  ++        r+++g + + w+  + +    + ++e
  CCE31533.1 262 NIGSLSGQIGMVYVEKYVGFWLAFLIPTALFLISPLVLWSQKKNYKLSPPTGSVLSKFLRMASFV--------RKRSGLRNFSWDVAKPSR---VPVEE 349
                 *********************************************************99998444........556677777777666333...44455 PP

                 CHHHHHHHHH-HHTHHCHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHTST-BESSCB--GGGGHHHHHHHHHHHHHHHHHCTHHHHHHTTSSCCC CS
        PTR2 184 ivvegivfnimtkkkveevkrllrvvplflpliifwalyaQmgttlvlqartmnrkigsfeippaqlqvlnailillliPifdklvypllrkltlglts 282
                 +     +        v++v+r l ++++fl+l+if+  y+Qm+ +l++qa+tm+r    + +p++ lq ln+i+i+++iPi+d+ +yp lrkl++ +t+
  CCE31533.1 350 RPSWMTY----DDAWVDQVRRGLMACKVFLFLPIFFLSYNQMTANLTTQASTMQR----HGVPNDVLQNLNPIAIVIMIPIVDHALYPGLRKLGIAFTP 440
                 5554444....5555****************************************....99************************************** PP

                 CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHT-------.....---TCCCHHHHHHHHHHHHHCCCHHHHHHCTSS-TTTCCCCHHHHHHHHHHHHHHH CS
        PTR2 283 lkkiavGlflaslafaiaaivelkraktlpelpeaeev.....qisvlwlipqylligiselfasiggleffykeapksmkslitglflltnalgnfls 376
                 +k++++G+++a+l++++ a+++  +++  p+   a++      +i+v+ + + y+ligi+e+fa++++ e+++++ap++mksl++++ l+ +a++++++
  CCE31533.1 441 IKRMTFGFLIAALSMVASAVMQYYIYQKSPCGWHANDKgcdpaPINVWAQSLPYILIGIAEIFANVTSYEYAFSKAPDNMKSLVMSVNLFMSAISSAIG 539
                 *******************************766666667999******************************************************** PP

                 HHHHHHHHC CS
        PTR2 377 svlatlvak 385
                 +  ++l  +
  CCE31533.1 540 QAFTPLSGD 548
                 999988766 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9  21.4   4.7e-10   2.1e-06      16     352 ..     102     539 ..      84     540 .. 0.71
   2 ?    0.0   0.1     0.069   3.1e+02     132     177 ..     538     579 ..     536     596 .. 0.51

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 4.7e-10
       MFS_1  16 gpal...plalaedlgispse......igl.......lltlyalgaavaslplGrlsd.rfGrrrvlllglllfalg.lllllfa..........sslw 86 
                 ++++   pl ++++ g++pse      +gl       +  +  ++a v+ l++++++d r+Gr +++ l++ ++ ++ ++l + +          + ++
  CCE31533.1 102 YTNFvnhPLPMGSTTGSDPSEdgnpgaLGLgpkaaqgISLFNQFFAYVMPLVGAWVADaRMGRFWTIHLAIGISTIAhAILVA-SsapsvivnnnA-SF 198
                 444433355777777777777555555444555555244445556666666667778866*****************555555.223344556533.44 PP

       MFS_1  87 .lllvlrvlqGlgagalfpagaaliadwfpk.e.................ergraigllsagfslGailgpllggllasslgWravfyilaivsllafv 166
                  +++++ +   +g+g++ +++  l+a+   + +                   +r + ++++++++G++ g +   ++  ++g+ ++f+i ++++l++ +
  CCE31533.1 199 aAFIIGLLCLCVGTGFFKANVSPLLAEQNEDiRprieirkgqrvivdpavTNTRIFLYFYLCINIGSLSGQIGMVYVEKYVGFWLAFLIPTALFLISPL 297
                 4777777777677777777777777766666446667*************99999999************88888888****999***********966 PP

       MFS_1 167 lfllllpeepperkrkspkeee........................kgtgpaplvp.........awkallkdpvlw.illialllfffgfsglltllp 231
                 +  l+    +++ k ++p+                           +++ + p+ +         aw   +++  +   +++ l +ff+ ++++++ l+
  CCE31533.1 298 V--LWS--QKKNYKLSPPTGSVlskflrmasfvrkrsglrnfswdvAKPSRVPVEErpswmtyddAWVDQVRRGLMAcKVFLFLPIFFLSYNQMTANLT 392
                 3..444..3333333333333334677788999999888888777633333333336677778888888888886645333333333446666666666 PP

       MFS_1 232 l..ylqevlgls.glllaglllallalvgail..allagrls.dr....lgrrrrlllallllllaalglallavt....................ssa 300
                 +   +++++g +  +l+++   +++ ++++++  +  a +   ++    + + +r+++++l+++l+ ++ a++  +                     + 
  CCE31533.1 393 TqaSTMQRHGVPnDVLQNL--NPIAIVIMIPIvdH--ALYPGlRKlgiaFTPIKRMTFGFLIAALSMVASAVMQYYiyqkspcgwhandkgcdpapINV 487
                 6333589999999889999..88888888888542..33333245455577799************************999999999999995554444 PP

       MFS_1 301 vllll....vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                     +    +++liG++  f+++++  +a + ap ++   +++++ +++++++a+g
  CCE31533.1 488 ----WaqslPYILIGIAEIFANVTSYEYAFSKAPDNMKSLVMSVNLFMSAISSAIG 539
                 ....345559999*****************************************98 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.069
       MFS_1 132 lGailgpllgg.llasslgWravfyilaivsllafv.lfllllpeepp 177
                 +G +++pl g  +l+    W ++  ++a ++ +++v +++++   +  
  CCE31533.1 538 IGQAFTPLSGDpYLV----WNYT--VVACIATVGGVaFWFCFRHLDSD 579
                 455555444433555....4433..44444444444244455544444 PP

>> NnrS  NnrS protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.2   0.00039       1.7      75     146 ..     149     220 ..     146     234 .. 0.83
   2 ?    4.4   2.4    0.0046        21      83     203 ..     266     420 ..     238     466 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00039
        NnrS  75 lallvllwla.arlallllglalaavldlafllllalllarellaakqwrnlavlalllllalanllfhlall 146
                 ++ lv++w+a ar+  ++  + la+++ ++  ++l++  a+ ++  ++    a+++ ll+l+++  +f +++ 
  CCE31533.1 149 VMPLVGAWVAdARMGRFWT-IHLAIGISTIAHAILVASSAPSVIVNNNASFAAFIIGLLCLCVGTGFFKANVS 220
                 6899*****9455554444.46***********************9*******************99988754 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0046
        NnrS  83 laarlallllglalaavldlafllllalllarellaakqwrnlavlalllllalanll..............fhla..............llglatala 153
                 l + + ++++  +  +++ lafl+ +al+l+ +l+   q++n+ + +  + ++  ++l              f ++              +        
  CCE31533.1 266 LSGQIGMVYV--EKYVGFWLAFLIPTALFLISPLVLWSQKKNYKLSPPTGSVLS-KFLrmasfvrkrsglrnFSWDvakpsrvpveerpsW-------- 353
                 2333333333..47789999***********99999999999988877665533.222122444555444443333334444333333333........ PP

        NnrS 154 sa............glrl.alllvlllillvggRvipfftanal.....elkarpsprldrlalalll 203
                  +            gl +  ++l+l++++l    +++ +t++a      +++    ++l ++a+++++
  CCE31533.1 354 -MtyddawvdqvrrGLMAcKVFLFLPIFFLSYNQMTANLTTQAStmqrhGVPNDVLQNLNPIAIVIMI 420
                 .0444444444777555558899999999999999999999988886544444444444444444443 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.8   0.00045         2      59     118 ..     164     217 ..     159     220 .. 0.88
   2 ?   -1.1   0.2      0.37   1.7e+03     101     115 ..     447     461 ..     438     466 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00045
     DUF2721  59 Rarlirrailllvlsallvvlvvlllflsallsldlsllaailfvlalllllvslllflr 118
                 R   i+ ai + +++ +++v++++  ++        + +  + f+++ll+l+v+  +f +
  CCE31533.1 164 RFWTIHLAIGISTIAHAILVASSAPSVI------VNNNASFAAFIIGLLCLCVGTGFFKA 217
                 7888999999999999999999999999......777888889************99965 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.37
     DUF2721 101 lfvlalllllvslll 115
                  f++a l++++s+++
  CCE31533.1 447 GFLIAALSMVASAVM 461
                 477777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 4841.53
//
Query:       CCE31534.1  [L=541]
Description: related to pisatin demethylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-47  161.5   0.0    6.2e-47  160.4   0.0    1.4  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.4   0.0   3.4e-51   6.2e-47       7     438 ..      60     508 ..      52     524 .. 0.82

  Alignments for each domain:
  == domain 1  score: 160.4 bits;  conditional E-value: 3.4e-51
                 HHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTT.......TTCEESSHHHHHHHHHTTTTSSSTTCGH...HHH CS
        p450   7 lplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkge.......efsgrpdeallatsrkpfkgkgvlfang...ekw 95 
                 +  ++++ ++  ++++ +   +l++kyg+i+r+ +++  + +   +ea+ +++++++        + +    +++++ + +++    + + +    ++ 
  CCE31534.1  60 ISSFWYARNIV-QGNMVKLGLELHRKYGDIVRVGPNELWFNT---TEAFDQIYCTGKGeleksdfYLATALSRPHVDWRLEAHFPDTLDLLSErsmKRY 154
                 44555555555.6888888999********998665533222...344444444433301011115566667777777666655555444433348999 PP

                 HHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSH.......................H CS
        p450  96 kklRrfltptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledek.......................l 170
                 + +Rr++ ++     ++ + e+ +++  +  +++l +  g+   +d++e++   +++ +g  +++ + ++ +d                          
  CCE31534.1 155 RLQRRLIGRAYSAA-NMlKHESAIDSTLAVAIQRLVELDGQE--VDLKEWMHILTVECLGAAVLSWSPGMFRDGTdwgtlthsyqgwrrkslfgvfptM 250
                 99999999999999.666************************..******************************9*************99999999998 PP

                 HHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHH CS
        p450 171 selvkaveelssllskssvqllllfpllkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvle 269
                 ++l+++  +l +++++ +  ++++++++++++ + +r + +        ++++ + + ++ +++   r d+l +l++ +  k+++ +++++ l++ + +
  CCE31534.1 251 KKLEQWSPDLGRVFASWWGVVYKTPKDFRPFFPNVNRLVIRR-------IKAIARPKSRKSQRD--GRADLLGDLIQLH--KDKP-EFNENYLRKMAVT 337
                 899999999999997777677777778888888888888855.......445555555555555..6899********7..8888.9************ PP

                 HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS.CEEETTEEE-TT-EEEEEH CS
        p450 270 llfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk.dvvirgylipkGtevivnl 367
                  ++aG++T++stl+ a + +a + +vq++l++E++ + +    + y+   +l y++a+i+E++Rlhpvv ++lpR+++   +++ g ++p  t+v  ++
  CCE31534.1 338 NFGAGHETMASTLTSAVAMIASHDNVQRRLTQEVRMTTEA---LVYANSHRLAYTKAAIREAMRLHPVVAMSLPRKTPPtGLHVHGLSVPPHTTVGCSP 433
                 *********************************9888877...89*******************************9866******************* PP

                 HHHHT-TTTS.SSTTS--GGGGB-TTS...CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEES CS
        p450 368 yalhrdpevf.pnPeeFdpeRFldekg...nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelq 438
                  alhr +e+f  +P+++ p R+l ++      +  + ++l  G G R+C+G++lA++ ++  +a l+ nF+ve+ 
  CCE31534.1 434 IALHRKEEIFgAEPDSYEPCRWLGAEMegrSVREMEKYSLNWGGGSRSCPGRNLAELIVFKTIAALFANFDVEVS 508
                 ************************999887445678899**********************************84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3847.53
//
Query:       CCE31535.1  [L=540]
Description: probable dityrosine transporter [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-50  171.3  25.0    2.6e-50  171.3  25.0    2.0  2  MFS_1       Major Facilitator Superfamily
    4.4e-10   39.0   6.1    4.4e-10   39.0   6.1    2.8  3  Sugar_tr    Sugar (and other) transporter
    4.6e-07   28.7   3.4    8.5e-07   27.8   3.4    1.3  1  TRI12       Fungal trichothecene efflux pump (TRI12)
    1.7e-05   23.5   1.1      3e-05   22.6   1.1    1.4  1  MFS_3       Transmembrane secretion effector
    0.00088   17.7   5.1      0.016   13.5   0.9    2.6  2  OATP        Organic Anion Transporter Polypeptide (OATP) fami
     0.0072   15.3   1.8      0.027   13.4   0.7    2.0  2  MFS_5       Sugar-tranasporters, 12 TM
  ------ inclusion threshold ------
       0.01   15.5   6.1       0.52    9.9   2.5    2.9  3  CPP1-like   Protein CHAPERONE-LIKE PROTEIN OF POR1-like
       0.72    9.3  11.4       0.77    9.2   0.3    3.7  3  UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit T


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.3  25.0   1.2e-53   2.6e-50       2     350 ..      66     480 ..      65     484 .. 0.79
   2 ?    0.4   0.4      0.11   2.5e+02     147     173 ..     492     523 ..     478     538 .. 0.48

  Alignments for each domain:
  == domain 1  score: 171.3 bits;  conditional E-value: 1.2e-53
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +++a+ls l++ i++pal+  l++dl+++ ++i+l +t+y+++++++ +++G+lsd  Grr+ +l++++l++++ + l++a+s+ +ll lr+lq++g++
  CCE31535.1  66 SCTALLSPLTAQIYLPALT-QLSKDLHVTDTQINLTITTYMIFQGITPMFVGALSDSGGRRPAYLACFILYIAANIGLALAPSYGALLGLRCLQSAGSS 163
                 6899***************.8************************************99***************55555656666************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll........................... 172
                 + ++++ a++ad+++  erg++ig+  + + l++ lgp++gglla++lgWra+f++l+i++ +a+v +++++                           
  CCE31535.1 164 STIALCTAVVADVVTSAERGQYIGFTVVPNVLAPSLGPIIGGLLAQYLGWRAIFWFLTIAAGVALVPIVFFFpetcrhivgngsitppplyrsvwqsir 262
                 ****************************************************************99445666899999999999999999999988888 PP

       MFS_1 173 ...peepperkrkspkeeekgtgpaplvp....awkallkdpvl.....w......illialllfffgfsglltllplylqevlglsglllaglllall 253
                    ++++++r+ +s  e+   tg +   +       ++++++v+     +      +ll+++ ++f+gf++l+t +p +l   +g+s  +++gl++  +
  CCE31535.1 263 lqrRRREKRRRESSALEKT-TTGAS---SastpKTFHFKTPNVFgslflLfeavngLLLWTSSVVFAGFYALSTAMPALLARNYGYS-EVQVGLMYLPM 356
                 8764444444444444442.22222...222345666666666666554156677879999999999********************.89999888888 PP

       MFS_1 254 alvgailallagrlsdr.............lgr............rrrlllallllllaalglallavtssavllll....vlvliGfglgfvfpslla 323
                 a++++++a +ag l++                r            r rl ++l+ll la ++l+ ++++ +a+ +++    +++++G+g+  ++ + + 
  CCE31535.1 357 AVGSIGAATIAGPLINFnfkrhciktgvpfE-RsqqqdlsgfpleRARLEIGLPLLGLAGASLIGWGWAMHAITHVAvpcvLSFILGIGMVGFNNTTNI 454
                 888888899******8777777777666650.155555555665655555555555555555555555533333333444578889**77777777777 PP

       MFS_1 324 lasdlappeeagtasglfntagslgga 350
                 l++d+ p  +agta++++n++++l+ga
  CCE31535.1 455 LLVDFNP-GKAGTATAANNLTRCLVGA 480
                 7777765.***************9876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.11
       MFS_1 147 slgWravfyilaivsllafv.lfllll....p 173
                 + g   +f +++++++++++ l +ll     +
  CCE31535.1 492 AMGVGPAFTLIGGLYFVSILpLLVLLRygmrW 523
                 44456678888888888866432222223333 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   6.1     2e-13   4.4e-10      38     204 ..      87     248 ..      31     315 .. 0.85
   2 ?    2.0   0.3     0.034        76       7      79 ..     312     380 ..     306     384 .. 0.68
   3 ?   -3.1   3.1       1.2   2.6e+03     101     425 ..     430     505 ..     410     517 .. 0.45

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 2e-13
                 HHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCH CS
    Sugar_tr  38 ksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklR 136
                 +++   +++++ l+   +++ + i+ +f+g l+d  GR++++l++ +l++++++  a+a+   s+ +l+  R l   g   + +l++  ++ + + + R
  CCE31535.1  87 SKDLHVTDTQINLTITTYMIFQGITPMFVGALSDSGGRRPAYLACFILYIAANIGLALAP---SYGALLGLRCLQSAGSSSTIALCTAVVADVVTSAER 182
                 3333337889999***********************************************...************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHH.CCHHHHHHHHHHGGGS---HHHHHHTT-H CS
    Sugar_tr 137 galvslyqlaitfGilvaaifglglnktsnadgwrillg.lqlvpallllilllflPESPrylvekgke 204
                 g+ ++++ +  ++   ++ i+g  l+++ +   wr  ++ l+++  ++l+ +++f+PE+ r  v +g  
  CCE31535.1 183 GQYIGFTVVPNVLAPSLGPIIGGLLAQYLG---WRAIFWfLTIAAGVALVPIVFFFPETCRHIVGNGSI 248
                 ****************************99...**888725566667888899********99998865 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.034
                 HHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHH CS
    Sugar_tr   7 lggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkksl 79 
                 + gll +  + v ++f++l+    +  l  ++   + s+v++gl+   + vG+i  + +ag+l+++  ++ ++
  CCE31535.1 312 VNGLLLWTSSVVFAGFYALST--AMPALLARNY-GY-SEVQVGLMYLPMAVGSIGAATIAGPLINFNFKRHCI 380
                 555555555566666666665..2333333332.23.679***********************9987666666 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.2
                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylv 199
                 +v v +v  +++Gig+ ++++++ +++  + p k                                                                 
  CCE31535.1 430 HVAVPCVLSFILGIGMVGFNNTTNILLVDFNPGK----------------------------------------------------------------- 463
                 4444444444444444444444333333332222................................................................. PP

                 HTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHH CS
    Sugar_tr 200 ekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgv 298
                                                                                                                    
  CCE31535.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

                 HHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHH CS
    Sugar_tr 299 vnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwl 397
                                                                                                       ++a+a    +  l
  CCE31535.1 464 -------------------------------------------------------------------------------------AGTATAANNLTRCL 477
                 .....................................................................................22333333333333 PP

                 HHHHHHHHHHHHHCHHHT-HHHHHHHHH CS
    Sugar_tr 398 anflisllfpiiteaigggyvflvfagl 425
                 +   +s  +  + +a+g g+ f + +gl
  CCE31535.1 478 VGAGVSAAIIPMIDAMGVGPAFTLIGGL 505
                 3333344444455555555555555555 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   3.4   3.8e-10   8.5e-07      65     228 ..      81     245 ..      63     263 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 3.8e-10
       TRI12  65 salpnilqdvgqsens.slfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgva..agpagasplfvgelms 160
                  al ++ +d+  ++ + +l  t + + q ++ + +g l+d  grrp  ++  il +   i  + a  + +ll    l      +  a +   +v ++++
  CCE31535.1  81 PALTQLSKDLHVTDTQiNLTITTYMIFQGITPMFVGALSDSGGRRPAYLACFILYIAANIGLALAPSYGALLGLRCLQSAGssSTIALC-TAVVADVVT 178
                 56777777887777663677899999****************************999999889999*****987777544300333333.345566554 PP

       TRI12 161 ..nktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgk 228
                   ++ +++g+ +v  p v   +l+p +g  la    wr if+   i + +a++  +v+++p + + + g+
  CCE31535.1 179 saERGQYIGFTVV--PNVLAPSLGPIIGGLLAQYLGWRAIFWFLTIAAGVALVP-IVFFFPETCRHIVGN 245
                 1256788887664..8888888*********************99999999765.568899998888776 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   1.1   1.3e-08     3e-05      61     181 ..     111     226 ..      70     271 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.3e-08
       MFS_3  61 lsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlg 159
                   +++Gal+D+  rR   la  +l +++ + l++   +g     +ll+l +l + G++ +     A+v ++v+  +  + +  + v   +a s GP +g
  CCE31535.1 111 TPMFVGALSDSGGRRPAYLACFILYIAANIGLALAPSYG-----ALLGLRCLQSAGSSSTIALCTAVVADVVTSAERGQYIGFTVVPNVLAPSLGPIIG 204
                 45789***************************9999888.....69***************************************************** PP

       MFS_3 160 GvlvaavGaalafavnalsyla 181
                 G+l   +G  + f + +++  +
  CCE31535.1 205 GLLAQYLGWRAIFWFLTIAAGV 226
                 ********99999877665433 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.2    0.0024       5.4       7      87 ..      67     147 ..      61     152 .. 0.84
   2 !   13.5   0.9   7.3e-06     0.016     140     360 ..     156     377 ..     148     383 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0024
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   7 sllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggr.ghrPrwigigallmalgslllalPh 87 
                 + + l+ +++ +y+  ++t++ k  + + +++ l  +++ i + ++ +fv+ + ++ g+rP ++++ +l +a    l   P 
  CCE31535.1  67 CTALLSPLTAQIYLP-ALTQLSKDLHVTDTQINLTITTYMIFQGITPMFVGALSDSgGRRPAYLACFILYIAANIGLALAPS 147
                 444444477777776.69*********************************99998789***********999888877776 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 7.3e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 140 lllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllklyvdidseisltpkdprWvgaWWlgflilgvllllaaiplffFPk 238
                 +l+ +G++  ++l+++ + D v++ +   y+g++ +  +l p lG ++G+ll++ y               W   +W   + +gv+l+ ++   ffFP+
  CCE31535.1 156 CLQSAGSSSTIALCTAVVADVVTSAERGQYIGFTVVPNVLAPSLGPIIGGLLAQ-YL-------------GWRAIFWFLTIAAGVALVPIV---FFFPE 237
                 67889*********************************************9888.52.............588899988888888877655...99999 PP

                 x.....................xxxxxxxxxxxxxxxxxx..x.....xxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 239 e.....................lpkkkeerakkkseeesa..e.....kkeekkkkeksksse..........eeelkslkdfpkalkrllknpifllv 299
                 +                              + +++++++  +     +k            +          +++  ++ +++ +l  l++    l +
  CCE31535.1 238 TcrhivgngsitppplyrsvwqS-------IRLQRRRREKrrRessalEK------------TttgassastpKTFHFKTPNVFGSLFLLFEAVNGL-L 316
                 98887777776666644332210.......11111111111111111111............11111111111133444444455555555544444.4 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 300 ilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklkl 360
                 + +s + + ++ +++t +p  l ++++ s+ +  l+  ++++ ++++ +++g l+   +k 
  CCE31535.1 317 LWTSSVVFAGFYALSTAMPALLARNYGYSEVQVGLMYLPMAVGSIGAATIAGPLINFNFKR 377
                 44445667888899999**************999999999999999999999888777765 PP

>> MFS_5  Sugar-tranasporters, 12 TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.7   1.2e-05     0.027      87     192 ..     113     217 ..      85     238 .. 0.82
   2 ?    0.3   0.0      0.12   2.7e+02      59     107 ..     337     384 ..     309     416 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
       MFS_5  87 tivgsladkfgrkracltyailyilacitkh.sgeykvlmigrvlggiatsllysafeswlvaehnkrgfddsllsivfskaiflgnslvaiiaglaan 184
                  +vg+l+d  gr+ a l   ilyi a i     + y  l+  r l    +s    a+ + +va+  +     ++++ +    + l  sl  ii gl+a+
  CCE31535.1 113 MFVGALSDSGGRRPAYLACFILYIAANIGLAlAPSYGALLGLRCLQSAGSS-STIALCTAVVADVVTSAERGQYIGFTVVPNV-LAPSLGPIIGGLLAQ 209
                 58**************************86527899999999999765544.45577788888888888889******99999.9************** PP

       MFS_5 185 llaerlgf 192
                 +l  r  f
  CCE31535.1 210 YLGWRAIF 217
                 99766554 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.12
       MFS_5  59 alyesygldkgdieilfiagfgssllfgtivgsladkfgrkracltyai 107
                  l  +yg++  +++ +++     s+   ti g l + f  kr c+   +
  CCE31535.1 337 LLARNYGYSEVQVGLMYLPMAVGSIGAATIAGPLIN-FNFKRHCIKTGV 384
                 46679************9999999999999999985.777888987666 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.4   3.1e+03      77     126 ..      53     100 ..      26     108 .. 0.50
   2 ?    9.9   2.5   0.00023      0.52     102     188 ..     147     232 ..     139     237 .. 0.83
   3 ?    5.7   0.0    0.0046        10      40     115 ..     262     336 ..     259     362 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.4
   CPP1-like  77 spawvkklqesldtPssedlliraavflvlavltlvapaesvpalllalg 126
                 + +w  +    +  +s + ll ++ + + l +lt ++++  v+  ++ l 
  CCE31535.1  53 LTSW--EKRGVVLGASCTALLSPLTAQIYLPALTQLSKDLHVTDTQINLT 100
                 4445..33334445555666666666666666666666666555555554 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00023
   CPP1-like 102 vflvlavltlvapaesvpalllalglgasiyflnrKekklgravlltlvgLvvGlllGsllasllqvdvalsglsseellvslvtlv 188
                  +++l++l  +++a s+ +++l ++++a ++   ++ + +g +v+  +++ ++G ++G+lla++l   +++  l + ++ v+lv +v
  CCE31535.1 147 SYGALLGLRCLQSAGSSSTIALCTAVVADVVTSAERGQYIGFTVVPNVLAPSLGPIIGGLLAQYLGWRAIFWFL-TIAAGVALVPIV 232
                 5899************************************************************9777544422.333344444444 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0046
   CPP1-like  40 rLreRqegkikvperirfaekkeeesppsasasklkk.....spawvkklqesldtPssedlliraavflvlavltlvapa 115
                 rL++R++ k   +e+    ek+ + +++ as++   k      p+ + +l   +++ ++  l+++++vf+++ +l+ ++pa
  CCE31535.1 262 RLQRRRREK-RRRESSA-LEKTTTGASS-ASTP---KtfhfkTPNVFGSLFLLFEAVNGLLLWTSSVVFAGFYALSTAMPA 336
                 566666666.2222222.2222222222.2211...1234558888999***************************99886 PP

>> UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   1.1      0.52   1.2e+03      25      35 ..     222     232 ..     219     235 .. 0.72
   2 ?    9.2   0.3   0.00034      0.77      20      36 ..     356     372 ..     351     373 .. 0.91
   3 ?    5.6   0.2    0.0046        10      24      38 ..     479     493 ..     474     494 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.52
  UCR_Fe-S_N  25 VGaaaaawPfi 35 
                 ++a+ a++P++
  CCE31535.1 222 IAAGVALVPIV 232
                 56788888877 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00034
  UCR_Fe-S_N  20 gavgaVGaaaaawPfid 36 
                  avg +Gaa+ a P+i+
  CCE31535.1 356 MAVGSIGAATIAGPLIN 372
                 69**************9 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0046
  UCR_Fe-S_N  24 aVGaaaaawPfidqm 38 
                 + G+ aa++P+id m
  CCE31535.1 479 GAGVSAAIIPMIDAM 493
                 45899********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 4076.39
//
Query:       CCE31536.1  [L=107]
Description: uncharacterized protein CPUR_05389 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       175  (0.00976072); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 867.01
//
Query:       CCE31537.1  [L=150]
Description: uncharacterized protein CPUR_05390 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1192.09
//
Query:       CCE31538.1  [L=544]
Description: uncharacterized protein CPUR_05391 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-13   51.6   0.2    3.3e-12   46.8   0.0    2.7  2  APH            Phosphotransferase enzyme family
    0.00066   18.7   0.0       0.71    8.7   0.0    2.1  2  DUF1679        Protein of unknown function (DUF1679)
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.66   10.2   0.0    2.2  2  Ribosomal_S10  Ribosomal protein S10p/S20e


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   5.6e-16   3.3e-12       2     202 ..      59     341 ..      58     342 .. 0.67
   2 ?    1.2   0.1     0.047   2.8e+02      33     118 ..     434     534 ..     414     543 .. 0.72

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 5.6e-16
                 EEEE--.SSCEEEEEEETT.--EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTE..EEEEEE----EE-SS...HHHHHHH CS
         APH   2 vrelsggasnrtylvttpa.gryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagdtddeeigl..lfalieyvpgrsllr...klsaaql 91 
                 ++ +++g++nr  l+t ++ +++v ++++p   r++ +i++eva +++ ++      P+v+++   +++ +   +f l+e v g  l +   k++ +++
  CCE31538.1  59 IEKIPDGLYNRILLLTMDNgKEVVAKIPNPNagRPHFTIASEVATMKFAREVLStDLPQVYDWSSRAQDTPVgaEFILMEKVHGVELQQlwpKMTTEER 157
                 7899*******9999999956******999999***************99997799*****9877777777778777777666666666666******* PP

                 HHHHHHHHHHHCCHHCH.-STTTB-..............................................................SHHCHTCCHHHH CS
         APH  92 pellealgeflaalhqvdpaalpla..............................................................dflaqdlellrq 128
                  e++ a+++++    +v  ++ +                                                                 ++++ l++ + 
  CCE31538.1 158 WEVVKAVAAYQESWASVTFEQYGSLyfaedfegenipalvytdekgervedsrfvigpstsremfdmgrcgidfdrgpwnsleeyhaAIGHRELACVQH 256
                 ************777772222222244444444444444555555555555555555555555555555555555555544444444333334444444 PP

                 HHCHHHCCCGCCTCC.HHHHHHHH.......HHHHHHHH--S...SS-EEEE-SS-SGGGEEEC...TTEEEEE---TT-EEEECC CS
         APH 129 lesatarllaselld.lleeleeq.......vlaalaallpg...elptvllHgDlhpgNllvd.pddgrvtGviDfedaglgppl 202
                 l++ + ++  s+ ++ l++  +e         l  l+  lp+    ++  l+H  lh  N+ vd +++ r++G+iD++ ++l+p  
  CCE31538.1 257 LPNLH-PSSFSLRGPgLYQPTREKkvaalesYLKLLKYALPAdrsLGSSHLWHDALHASNIFVDpDNPSRIVGIIDWQSTHLSPLY 341
                 44443.22333333343333333333323323333333334388899*****************99***************99875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.047
                 -HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE.......EEEEEE----EE-SS.........HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB CS
         APH  33 aaeeirrevallrlLakagvpvPevlagdtddeeigl.......lfalieyvpgrsllr.........klsaaqlpellealgeflaalhqvdpaalpl 115
                  a  ++ e+++ +l   +g+p P +l   td+e i           +++e++  r  ++         + + ++++el ea  e+la++ +++ + ++l
  CCE31538.1 434 MAVACELEQEWETLPGTQGIPFPLPLT-ATDRENIDEdamsaavGIQAMERIKRRLGRDfplngfvlhHKHKRVIDELSEATKEVLAEVEEIRRNLDRL 531
                 566788888888888889998888885.33333333345566667777777777777777779999998899999999999999999888887776666 PP

                 -SH CS
         APH 116 adf 118
                 + +
  CCE31538.1 532 DAE 534
                 655 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00012      0.71     134     204 ..     116     188 ..      98     219 .. 0.75
   2 !    7.8   0.0   0.00021       1.3     238     304 ..     278     338 ..     269     340 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00012
     DUF1679 134 tkvyflkkfdeenkl.kgyiimeyvedihtlsmyenikadelipvlkaiAtlqalslslseeekksa.sgadf 204
                 ++vy  ++  +++++   +i me v +++  ++  +++ +e + v+ka+A+ q    s++ e+  s+   +df
  CCE31538.1 116 PQVYDWSSRAQDTPVgAEFILMEKVHGVELQQLWPKMTTEERWEVVKAVAAYQESWASVTFEQYGSLyFAEDF 188
                 5666655555444441459**********************************99999988877666445555 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00021
     DUF1679 238 eelvdiveeylkeililekaskvskvlGikkvlvhgDlwsaNiLfseeeegklklkkviDyQlvslg 304
                 e++v ++e+y   ++ l+ a   ++ lG +  l h  l ++Ni+   ++     +  +iD+Q  +l+
  CCE31538.1 278 EKKVAALESY---LKLLKYALPADRSLGSS-HLWHDALHASNIFVDPDNP--SRIVGIIDWQSTHLS 338
                 6667777777...77777777788888864.589***********99777..67789******9986 PP

>> Ribosomal_S10  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00011      0.66      24      81 ..     139     196 ..     130     202 .. 0.86
   2 ?   -1.3   0.1      0.44   2.6e+03      63      81 ..     502     521 ..     500     529 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00011
                    TSSS-EE---EEEEEEEEEEEEE--SS--S--EEEEEEEEEEEEEEEE.E-HHHHHHH CS
  Ribosomal_S10  24 kelgikvkgpvplPtkrkrvtvlksphvdkksreqfeirthkRlidisdatketidtl 81 
                    k +g+++++ +p  t ++r+ v k + ++++s+     +++  l   +d + e+i++l
     CCE31538.1 139 KVHGVELQQLWPKMTTEERWEVVKAVAAYQESWASVTFEQYGSLYFAEDFEGENIPAL 196
                    6789999*********************************998877777777777665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.44
                    EEEEEEE.EE.E-HHHHHHH CS
  Ribosomal_S10  63 thkRlid.isdatketidtl 81 
                     hkR+id +s+atke++ ++
     CCE31538.1 502 KHKRVIDeLSEATKEVLAEV 521
                    699**974677777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3855.39
//
Query:       CCE31539.1  [L=679]
Description: uncharacterized protein CPUR_05392 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-08   33.3   1.4    2.7e-07   30.4   0.5    2.8  2  F-box-like  F-box-like
    0.00011   22.0   4.0    0.00012   21.9   0.2    2.6  2  F-box       F-box domain
  ------ inclusion threshold ------
      0.027   15.3   0.1       0.42   11.6   0.1    2.9  3  TPR_14      Tetratricopeptide repeat
      0.034   14.0   0.0        8.5    6.4   0.0    2.8  2  TPR_1       Tetratricopeptide repeat
      0.098   13.1   6.9    1.7e+02    2.8   0.0    6.8  9  LRR_4       Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.26   9.3e+02      28      44 ..      59      75 ..      56      77 .. 0.91
   2 !   30.4   0.5   7.6e-11   2.7e-07       4      46 ..     194     238 ..     192     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.26
  F-box-like 28 CrrWrrvaldtplLWrr 44
                C+r  rva+++ +++++
  CCE31539.1 59 CKRYERVAAREGSIYKE 75
                ********999999975 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 7.6e-11
  F-box-like   4 LPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldt..plLWrrlv 46 
                 LP E+  ++FsyL+ +d+l + +VC++W r   ++   +LWr++ 
  CCE31539.1 194 LPAELVTDVFSYLSYQDILVCFRVCKQWERTLTSPlhGQLWRNMI 238
                 9****************************9995543348998875 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.2   3.3e-08   0.00012       4      39 ..     192     227 ..     190     229 .. 0.91
   2 ?    0.0   0.6      0.23   8.3e+02      15      28 ..     409     422 ..     409     422 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.3e-08
                 HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT CS
       F-box   4 srLPsevlrhILerLplsdllalrrVSkgwrilids 39 
                 ++LP e++ +++++L+  d+l + rV+k w + + s
  CCE31539.1 192 FCLPAELVTDVFSYLSYQDILVCFRVCKQWERTLTS 227
                 79****************************887765 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.23
                 HHTS-HHHHHHHCT CS
       F-box  15 LerLplsdllalrr 28 
                 Le+L++ +ll+l++
  CCE31539.1 409 LEQLSFASLLSLSL 422
                 899*********96 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.6   5.9e+03      12      32 ..      25      45 ..      21      50 .. 0.82
   2 ?   11.6   0.1   0.00012      0.42       8      43 ..     104     139 ..      97     140 .. 0.83
   3 ?   -2.0   0.0       2.7   9.6e+03      17      29 ..     522     534 ..     521     537 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.6
      TPR_14 12 lalGdpdeAiallrralalaP 32
                +a+ ++ +A + + ra + +P
  CCE31539.1 25 FAAKRYSQASQFFSRAMKICP 45
                578899999999999999888 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00012
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 a   +a G++ eAi++++++l+laP+ ++ +l+ ++
  CCE31539.1 104 ATTSEAMGELYEAINYAEWMLELAPQLPDGYLRVGR 139
                 6666899*******************9998887665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.7
      TPR_14  17 pdeAiallrrala 29 
                 pd+A++ll  a++
  CCE31539.1 522 PDRARTLLSNAVK 534
                 8999999999876 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0024       8.5      13      32 ..      26      45 ..      24      45 .. 0.92
   2 ?    4.5   0.0     0.009        32      13      33 ..     109     129 ..     104     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0024
                HTT-HHHHHHHHHHHHHHST CS
       TPR_1 13 klgkydeAleyyekALelnP 32
                  ++y +A +++++A +++P
  CCE31539.1 26 AAKRYSQASQFFSRAMKICP 45
                679***************98 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.009
                 HTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  13 klgkydeAleyyekALelnPn 33 
                  +g++ eA+ y e  Lel P+
  CCE31539.1 109 AMGELYEAINYAEWMLELAPQ 129
                 69*****************96 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.65   2.3e+03      22      30 ..     294     302 ..     286     307 .. 0.75
   2 ?   -3.4   0.0       4.2   1.5e+04      16      32 ..     315     332 ..     309     341 .. 0.70
   3 ?    1.7   0.0      0.11   3.8e+02       3      30 ..     357     387 ..     355     392 .. 0.69
   4 ?   -1.4   0.0         1   3.7e+03       2      13 ..     408     418 ..     400     447 .. 0.58
   5 ?   -2.7   0.1       2.5     9e+03      17      30 ..     461     474 ..     458     477 .. 0.69
   6 ?   -0.5   0.0      0.53   1.9e+03      12      28 ..     495     513 ..     492     514 .. 0.72
   7 ?    2.8   0.0     0.048   1.7e+02      12      32 ..     562     582 ..     559     585 .. 0.86
   8 ?    1.5   0.0      0.12   4.3e+02      19      30 ..     601     612 ..     597     625 .. 0.80
   9 ?    1.8   0.4     0.099   3.5e+02      19      33 ..     630     642 ..     605     645 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.65
                 -TT--EEE- CS
       LRR_4  22 lpnLkeLdL 30 
                  p L++Ld+
  CCE31539.1 294 SPRLEHLDI 302
                 577888877 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.2
                 -S-HHH.-TT--EEE-.- CS
       LRR_4  16 ipllek.lpnLkeLdLsg 32 
                 +p+ ek +  L+++++ g
  CCE31539.1 315 LPSNEKiCVRLRHVSIKG 332
                 555556688888888844 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.11
                 --EEE--S......S---E-S-HHH-TT--EEE- CS
       LRR_4   3 LevLdLsn......NqltdiplleklpnLkeLdL 30 
                 Le+L++ +      N + +ip+   +p+Lk+L +
  CCE31539.1 357 LEHLNITSipmdwyNSVPSIPP---FPKLKTLGI 387
                 5555555555555577778888...999999966 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1
                 S--EEE--SS-- CS
       LRR_4   2 nLevLdLsnNql 13 
                 +Le L++++  l
  CCE31539.1 408 RLEQLSFAS-LL 418
                 333333333.22 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 2.5
                 S-HHH-TT--EEE- CS
       LRR_4  17 plleklpnLkeLdL 30 
                   l++l +L++++ 
  CCE31539.1 461 RYLASLNSLQHIHF 474
                 55677888888764 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 0.53
                 ---E-S-.HH.H-TT--EE CS
       LRR_4  12 qltdipl.le.klpnLkeL 28 
                 +ltd ++ ++ +l nL++L
  CCE31539.1 495 RLTDSGGfPQaQLQNLRSL 513
                 5776666455569999998 PP

  == domain 7  score: 2.8 bits;  conditional E-value: 0.048
                 ---E-S-HHH-TT--EEE-.- CS
       LRR_4  12 qltdiplleklpnLkeLdLsg 32 
                 +l+  ++l+++p+ ++L++++
  CCE31539.1 562 HLKGYDWLRGNPKIHTLSCHD 582
                 488999*************54 PP

  == domain 8  score: 1.5 bits;  conditional E-value: 0.12
                 HHH-TT--EEE- CS
       LRR_4  19 leklpnLkeLdL 30 
                 l+ +pnL++L++
  CCE31539.1 601 LATFPNLRTLTI 612
                 5669******98 PP

  == domain 9  score: 1.8 bits;  conditional E-value: 0.099
                 HHH-TT--EEE-.-S CS
       LRR_4  19 leklpnLkeLdLsgN 33 
                 l+  +nLk ++Ls N
  CCE31539.1 630 LK-VTNLKIIHLS-N 642
                 33.7788888884.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 5333.59
//
Query:       CCE31540.1  [L=254]
Description: uncharacterized protein CPUR_05394 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 2030.27
//
Query:       CCE31541.1  [L=207]
Description: uncharacterized protein CPUR_05393 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1696.69
//
Query:       CCE31542.1  [L=155]
Description: uncharacterized protein CPUR_05395 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.05   13.0   0.0      0.061   12.7   0.0    1.1  1  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.4e-06     0.061       1      35 [.      58      92 ..      58     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.4e-06
                EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECH CS
     Pkinase  1 yekleklGeGsfGkVykaveketgkivAvKkikke 35
                y+++ klG G++++V  a++ +++++vA+K    +
  CCE31542.1 58 YQVVGKLGFGTTSTVWLARDLSERRHVALKLYIGS 92
                78899*************************87655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1257.10
//
Query:       CCE31543.1  [L=84]
Description: uncharacterized protein CPUR_05396 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 684.21
//
Query:       CCE31544.1  [L=62]
Description: uncharacterized protein CPUR_05397 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 473.98
//
Query:       CCE31545.1  [L=28]
Description: uncharacterized protein CPUR_05398 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (28 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       114  (0.00635841); expected 358.6 (0.02)
Passed bias filter:                       94  (0.0052429); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 215.04
//
Query:       CCE31546.1  [L=103]
Description: uncharacterized protein CPUR_05399 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-08   34.8   0.0    1.1e-08   34.8   0.0    1.1  1  Pkinase         Protein kinase domain
    6.8e-06   26.2   0.4      8e-06   25.9   0.4    1.1  1  APH             Phosphotransferase enzyme family
    2.9e-05   23.5   0.0    3.5e-05   23.3   0.0    1.1  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0015   18.0   0.0     0.0016   17.8   0.0    1.1  1  Kinase-like     Kinase-like
      0.004   16.0   0.0     0.0046   15.8   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
     0.0043   16.7   0.0     0.0053   16.4   0.0    1.1  1  RIO1            RIO1 family
  ------ inclusion threshold ------
      0.028   13.7   0.0      0.031   13.5   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
       0.03   13.9   0.1      0.036   13.6   0.1    1.1  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0     5e-12   1.1e-08     103     146 ..      18      61 ..       2      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 5e-12
                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSE CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlak 146
                  ++ i +g+++lHs gi+H D+ p+Ni++de +   i+DF+  +
  CCE31546.1  18 CLEGIERGVRHLHSLGIVHNDINPANIMFDELDRPVIIDFDSWQ 61 
                 567899************************9999******9755 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.4   3.6e-09     8e-06     158     194 ..      27      58 ..       3      61 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.6e-09
                 HH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 158 allpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 ++l+   + +++H+D++p N+++d+ d +v  +iDf+
  CCE31546.1  27 RHLH---SLGIVHNDINPANIMFDELDRPV--IIDFD 58 
                 5666...79***************999999..****8 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.6e-08   3.5e-05     123     170 ..      18      61 ..       3      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.6e-08
         Kdo 123 llkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkar 170
                  l+ + r ++ lh++g+ H d+++ ni++++ +    + ++iD+d  +
  CCE31546.1  18 CLEGIERGVRHLHSLGIVHNDINPANIMFDELD----RPVIIDFDSWQ 61 
                 56778899************************9....*******9655 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   7.2e-07    0.0016     155     197 ..      24      66 ..       3      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.2e-07
  Kinase-like 155 rlaanLqakglvhgkftvdnllldekgglmlggftaLvragtk 197
                  r + +L+++g+vh+++++ n+++de  + ++ +f++  r g++
   CCE31546.1  24 RGVRHLHSLGIVHNDINPANIMFDELDRPVIIDFDSWQREGQE 66 
                  5689***********************99999**999999976 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     2e-06    0.0046     317     361 ..      24      62 ..      15      77 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2e-06
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlake 361
                     +g r L+   gi+H+Di   Ni++      + ++ ++iD+D    
      CCE31546.1  24 RGVRHLH-SLGIVHNDINPANIMFD-----ELDRPVIIDFDSWQR 62 
                     5789999.****************9.....678889999997655 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.4e-06    0.0053     107     149 ..      14      57 ..       2      63 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 107 aeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                 +++l  e +e   + ++  g+vH D++  N+++de  ++viID+
  CCE31546.1  14 DKDLCLEGIERGVRHLHSLGIVHNDINPANIMFDELdRPVIIDF 57 
                 56666777787788889*****************977******8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.4e-05     0.031     109     147 ..      19      57 ..       2      71 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
                  HHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-ST CS
  Pkinase_Tyr 109 alqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDf 147
                     + +G+++L+s  +vH d+   N++ +e +   i Df
   CCE31546.1  19 LEGIERGVRHLHSLGIVHNDINPANIMFDELDRPVIIDF 57 
                  456889**********************99887777777 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.6e-05     0.036     143     171 ..      30      57 ..       2      59 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
                     G-EEEE-S--SGGGEEE.-CTTEEEE--G CS
  Choline_kinase 143 spvvfcHnDlqegNillnkeekklvlIDF 171
                     +++   HnD+ + Ni++ +e ++ v+IDF
      CCE31546.1  30 HSLGIVHNDINPANIMF-DELDRPVIIDF 57 
                     457788***********.88888899**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 812.19
//
Query:       CCE31547.1  [L=369]
Description: probable dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-20   73.3   0.0    8.6e-20   71.2   0.0    1.9  1  Pkinase         Protein kinase domain
     0.0014   18.0   0.2     0.0051   16.1   0.1    2.0  2  Pkinase_Tyr     Protein tyrosine kinase
  ------ inclusion threshold ------
      0.017   14.7   0.0       0.18   11.4   0.0    2.0  2  RIO1            RIO1 family
       0.21   11.1   0.0       0.39   10.3   0.0    1.4  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   1.9e-23   8.6e-20       1     221 [.      64     333 ..      64     352 .. 0.81

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 1.9e-23
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS........CTTB--EEEEEEE....SSEEEEEEE--TTEBH.H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk........hpnivrlyevfee....kdelylvleyveggel.a 86 
                 y+++ klG G++++V  a++ +++++vA+K    +    +   ++ +Ei+  k+++         + +  l+++f+      ++ +lv   +    + +
  CCE31547.1  64 YQVVGKLGFGTTSTVWLARDLSERRHVALKLYIGSGSMVR---SLDNEINAYKRIEnssikhpgRSAVRALLDSFHVdgphGSHQCLVHPPLWDSAFgF 159
                 78899*************************9887765553...35566666666651112201034455566666659999899999999888666414 PP

                 HHHHHHSS--HHHHHHHHHHHHHHHHHHHHTT.EE-SS-SGGGEEEET...................................TTE....EEE-SGTTS CS
     Pkinase  87 dllerkgslseeeakkiakqilegleylHskg.iiHrDlKpeNiLide...................................kge....lKitDFGla 145
                 ++ +  + ++ + +  ++++++++l+ lH+++ i H D+  +N+L+                                       +    l ++DFG a
  CCE31547.1 160 RHRNPMRRFPGQIMAIVLERLFQALDLLHQEChIAHTDIQESNMLLGAdesvlrefeqeelsnpcprkelegktvyqsrelnqA-KnfdaLVLCDFGSA 257
                 44446667*********************7655*************9558********************99999998887651.25688********* PP

                 EESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT CS
     Pkinase 146 kelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg 221
                  +l+ +   ++ +    Y+APEv+ + + +++vD+W +G++++  + g ++f g++ + k+++   +l +++ +lg
  CCE31547.1 258 MHLDDGIARREDIQPDVYRAPEVVLGIPWTSSVDIWNVGCMVWDCFQGGHLFTGHDPELKTYRGRAHLAEMIALLG 333
                 *******9999999***************************************99988888888877888877777 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       0.6   2.7e+03       6      36 ..      69      95 ..      65     122 .. 0.62
   2 !   16.1   0.1   1.1e-06    0.0051     142     203 ..     249     307 ..     171     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.6
                 EEEEESSEEEEEEEEETTTTSSEEEEEEEEE CS
  Pkinase_Tyr  6 klGeGafGkVvegtlkgekekkevkVavKtl 36
                 klG G+ ++V+ ++      +++ +Va+K  
   CCE31547.1 69 KLGFGTTSTVWLARDL----SERRHVALKLY 95
                 6777777778777766....77888888876 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.1e-06
                  EEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSS CS
  Pkinase_Tyr 142 vkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlge 203
                    ++DfG a ++   d+  +++e   p  + apE++     ts+ D+W  G ++w  f+ g+
   CCE31547.1 249 LVLCDFGSAMHL---DDGIARREDIQPDVYRAPEVVLGIPWTSSVDIWNVGCMVWDCFQGGH 307
                  568****99999...66777888999********************************9664 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.069   3.1e+02       4      52 ..      80     129 ..      77     133 .. 0.78
   2 ?   11.4   0.0     4e-05      0.18     110     151 ..     176     217 ..     166     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.069
                 EEEE.TTTEEEEEEEE-S---SS-HHHHCTTTSTTSTCG--GS-HHHHHH CS
        RIO1   4 havs.edgkevaiKiyktstteFkkrkkyvsgekrfkdrksktnprklvk 52 
                  a++ +++++va+K+y  s +  ++ ++ ++  kr +++  k+  r+ v+
  CCE31547.1  80 LARDlSERRHVALKLYIGSGSMVRSLDNEINAYKRIENSSIKHPGRSAVR 129
                 55554566699999999999999999999999999998888877777665 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4e-05
                 HHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE--GTT CS
        RIO1 110 lyeevleemrklykeaglvHaDLSeyNvlvdedkvviIDvsQ 151
                 ++e + +++  l +e+++ H D+ e N+l+  d+ v+  + Q
  CCE31547.1 176 VLERLFQALDLLHQECHIAHTDIQESNMLLGADESVLREFEQ 217
                 567788899999*********************988876666 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   8.8e-05      0.39     132     171 ..     178     254 ..     163     259 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.8e-05
                     HTHHHHHHCHGG-EEEE-S--SGGGEEE......................................-CTTEEEE--G CS
  Choline_kinase 132 ekleklleelespvvfcHnDlqegNill.....................................nkeekklvlIDF 171
                     e+l + l+ l+++   +H D+qe+N+ll                                     +k+ + lvl DF
      CCE31547.1 178 ERLFQALDLLHQECHIAHTDIQESNMLLgadesvlrefeqeelsnpcprkelegktvyqsrelnqAKNFDALVLCDF 254
                     556667778899999*************8888888888888888888888888888888887777777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2940.33
//
Query:       CCE31548.1  [L=285]
Description: related to dis1-suppressing protein kinase dsk1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-12   47.7   0.0    6.8e-08   32.2   0.0    2.2  2  Pkinase      Protein kinase domain
     0.0062   15.9   0.1       0.28   10.4   0.0    2.4  3  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     4e-06     0.036     101     132 ..       2      33 ..       1      41 [. 0.92
   2 !   32.2   0.0   7.6e-12   6.8e-08     136     264 .]      95     265 ..      85     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4e-06
                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLid 132
                 +++a+q++ +l+ +H++g+ H Dl   Ni+++
  CCE31548.1   2 QSFAAQLVIALSIVHERGFAHGDLHLGNIFLQ 33 
                 6899**************************97 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 7.6e-12
                 EEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT....SHH...H CS
     Pkinase 136 elKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg....etkeklp 228
                 +l ++DFG+a + +++s      +++  ++PE     e + + ++D++slG+ ++ ll+ +++++g    ++    ++q    +++ g    ++   ++
  CCE31548.1  95 KLILSDFGVAFRPDEKS-QYVSHASPVRRPPESQfePEVPLTFASDIYSLGCAIFDLLAHRTLLNGYWILSDDDITVQQ----IDLEGpmppTWWRRWK 188
                 57799*******99998.6667789999*****97666778************************55544444444444....3444443333333333 PP

                 HHTTS............................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 229 easei............................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                                                   + +++ll+ +l + p++R+ ++e+lq++++
  CCE31548.1 189 G---RseyfdeegnlldklhdpwtwerrfgewvrdsrqewgmgtfaedeMNALIKLLRCMLVWMPSERPDISEVLQSEWM 265
                 3...25559999999*******************************9999999**************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.9   0.0    0.0063        56     107     137 ..       3      33 ..       1      42 [. 0.91
   2 !   10.4   0.0   3.1e-05      0.28     142     200 ..      96     152 ..      86     171 .. 0.85
   3 ?   -3.3   0.0      0.47   4.2e+03     234     256 ..     238     260 ..     230     262 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.0063
                  HHHHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr 107 sfalqvAkGmeyLeskklvHrdlaarNvLls 137
                  sfa+q+  +++ ++++ + H dl   N++l+
   CCE31548.1   3 SFAAQLVIALSIVHERGFAHGDLHLGNIFLQ 33 
                  689999999*******************997 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 3.1e-05
                  EEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 142 vkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEift 200
                    +sDfG+a +  ++++yv++     pv+  +pEs +e +  +t +sD++s G  ++ ++ 
   CCE31548.1  96 LILSDFGVAFRPDEKSQYVSHA---SPVR-RPPESQFEPEvpLTFASDIYSLGCAIFDLLA 152
                  568*******998888887554...6776.699*999988789***********9999875 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.47
                  HHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 234 lyelmkkcweedpeeRptfselv 256
                  l +l++  +   p+eRp++se++
   CCE31548.1 238 LIKLLRCMLVWMPSERPDISEVL 260
                  44555555567889999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2410.54
//
Query:       CCE31549.1  [L=88]
Description: uncharacterized protein CPUR_05402 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 659.48
//
Query:       CCE31550.1  [L=221]
Description: uncharacterized protein CPUR_05403 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0007   19.8   0.0     0.0015   18.7   0.0    1.5  1  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   8.6e-08    0.0015      14      82 ..      16      83 ..       8      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 8.6e-08
                EEEETT.TEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-CGG CS
         BTB 14 tlvvgd.gkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtgeleitsee 82
                 +vvg+ ++e+  h   +a+ S+++ +++++  + e ++    l d + ++++a+ efiYtg  +i  ++
  CCE31550.1 16 KFVVGKaKEELFLHSTLVASKSEVLGKMIKGP-FIEGQQGYAALADEDVQTVAAFAEFIYTGDYKIR-KD 83
                678888899***********************.55555556889******************99995.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1728.05
//
Query:       CCE31551.1  [L=169]
Description: uncharacterized protein CPUR_05404 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1404.78
//
Query:       CCE31552.1  [L=257]
Description: uncharacterized protein CPUR_05405 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-06   27.8   0.1    2.6e-05   24.4   0.0    2.3  3  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.4e-09   2.6e-05      14      81 ..      15      81 ..       5      89 .. 0.86
   2 ?   -1.6   0.0      0.17   3.1e+03      85     109 ..     150     174 ..     143     176 .. 0.81
   3 ?   -0.3   0.0     0.066   1.2e+03      60      91 ..     185     215 ..     169     217 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.4e-09
                EEEETT.TEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-CG CS
         BTB 14 tlvvgd.gkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtgeleitse 81
                 +vvg+ ++e+  h a +a+ S+++++++++  + e ++  ++l d + +++ a+ efiYt++ +++  
  CCE31552.1 15 KFVVGEaKEELFLHSALVASKSEVLSKMMNGP-FIEGQQGYVTLADEDVSTIVAFAEFIYTDKYNLE-P 81
                567777899***********************.6666666799********************9986.4 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.17
                 HHHHHHHHHHT-HHHHHHHHHHHHH CS
         BTB  85 eelLaaadllqiprlkkaceeflkq 109
                 ++++  ad + +  l ++++++l +
  CCE31552.1 150 AKIFIFADCYGVWGLLDQAMQKLHK 174
                 5667789999999999999998875 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.066
                 GHHHHHHHHHHHHHSEEEC-CGGGHHHHHHHH CS
         BTB  60 epeafealLefiYtgeleitseenleelLaaa 91 
                 +  ++ al++f+Y   ++ +  + l++  +aa
  CCE31552.1 185 SIGDIMALVRFCYERPCPEK-LKRLVASYSAA 215
                 566778999****9988885.77776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2188.79
//
Query:       CCE31553.1  [L=30]
Description: uncharacterized protein CPUR_05406 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       164  (0.00914719); expected 358.6 (0.02)
Passed bias filter:                      139  (0.0077528); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 223.33
//
Query:       CCE31554.1  [L=18]
Description: uncharacterized protein CPUR_05407 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (18 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       166  (0.00925874); expected 358.6 (0.02)
Passed bias filter:                      119  (0.00663729); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 149.70
//
Query:       CCE31555.1  [L=99]
Description: uncharacterized protein CPUR_05408 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 735.11
//
Query:       CCE31556.1  [L=284]
Description: uncharacterized protein CPUR_05409 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-06   27.6   0.1    2.9e-05   24.3   0.0    2.3  2  BTB       BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.6e-09   2.9e-05      15      79 ..      14      78 ..      12      95 .. 0.87
   2 ?    0.7   0.1     0.034   6.2e+02      64     107 ..     161     204 ..     136     208 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.6e-09
                EEETT.TEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC- CS
         BTB 15 lvvgd.gkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtgeleit 79
                ++vg+ +kef  h a +a+ S+++ +++++  + e ++  ++l+d  +++++a++ef++tg  +it
  CCE31556.1 14 FMVGKaKKEFFLHSALVASKSEVLGKMMNGP-FIEGQQGYVTLPDEGASTIAAFVEFAFTGDYKIT 78
                7888889************************.6666666799*******************99986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.034
                 HHHHHHHHHHSEEEC-CGGGHHHHHHHH.HHHT-HHHHHHHHHHH CS
         BTB  64 fealLefiYtgeleitseenleelLaaa.dllqiprlkkaceefl 107
                 + +l++++Y   ++ +  +++++  +aa    q+ ++++ c ++l
  CCE31556.1 161 IVSLVSYCYERPCPGK-LKKMVASYSAAiMDSQVTDVAACCFQKL 204
                 5578889998888886.7788887777767777777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2155.02
//
Query:       CCE31557.1  [L=115]
Description: uncharacterized protein CPUR_05410 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 865.94
//
Query:       CCE31558.1  [L=699]
Description: uncharacterized protein CPUR_05411 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-19   70.8   0.6    9.5e-19   67.9   0.6    2.0  1  Sulfatase     Sulfatase
    8.7e-06   25.6   0.1    1.5e-05   24.8   0.1    1.3  1  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp
     0.0041   15.8   0.0     0.0056   15.3   0.0    1.2  1  DUF229        Protein of unknown function (DUF229)


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.6   1.6e-22   9.5e-19      33     307 ..     273     562 ..     258     564 .. 0.72

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 1.6e-22
                 HHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTTHHCTTTS-HHHHHHHHTT-EEEEEEES-SCCSGGGSHHCCTTTSEEEETSSSCHHT CS
   Sulfatase  33 aeeglrftnfysaaplcspsraalltgryphnsgvasntevgggglpqteatLpellkeaGYntaaigkwhlgwssrqsvyknrgfdrflgfptgsaal 131
                 ++ g++ +n +++a+++ +s++ +l g  p  +++    e++       +++Lp++++    n  +  + +    + +         r  g  + ++  
  CCE31558.1 273 RRGGINAKNDHTTATYTLKSVPGTLCGITPLVADFN--VEYN---HHVYQPCLPQIFNLF--NA-MNEPEESAKGEAN--------ARADGAEADEDFT 355
                 578888888889999999999999999998888853..3333...344555555555544..22.2222222222222........2344444444444 PP

                 CCCCCCCCCECTCCC.........................................TTTTCSHHHHHHHHHHHHHHCCCTSSEEEEEEE-TTSSSTCTC CS
   Sulfatase 132 kdpekseyngevlrv.........................................ppeggysddrlldealefllarndkpfflylatlapHappeap 189
                 +++++++  ++v+++                                             +  ++++ + a +  +++n++  fl+  t+ +H+p+  p
  CCE31558.1 356 TYKWRNQFVMSVTNTydkqdllmpvlgykkediiskeylqsdkakfgkvtlpdinyYGMRESATEDYIKDAFKM-AKENKERVFLTHLTSTSHHPFKMP 453
                 44444444444444455555556667778888888899999999999999998654444455677777777777.8888999999999*****999777 PP

                 GGHTCCGSTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCE CS
   Sulfatase 190 deyakkyatffddgseaarqlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekapr 288
                 de +    ++ d++     + ++ y n+v  vD  +gr+l+ L+e+g++d+tlvv+++Dhg s+ e       +++++ + g ++vPl+v  p+     
  CCE31558.1 454 DEEVYVPLASGDSL-----EDVSHYVNTVGFVDRWLGRILDILDEQGVADETLVVMVGDHGLSVVE---TGSVTPYYQPNIGNFHVPLVVSHPKLPVI- 543
                 76555433333443.....99*******************************************88...55566666799*************99999. PP

                 EECSEEEGGGHHHHHHHHT CS
   Sulfatase 289 vseelvshiDlfptildla 307
                   + ++++i ++ptildl+
  CCE31558.1 544 DIDSPTNSISILPTILDLL 562
                 99***************96 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   2.5e-09   1.5e-05     172     237 ..     434     513 ..     353     527 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.5e-09
                   SESEEEEEECCCHHHHHHH-TTSHH................HHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEE CS
  Phosphodiest 172 kpdlllvyleetDtvgHkfGpdspe................vedalrrvDkaigdLlealderglsaetniilvSDHGmadv 237
                   k +++l++l++t  ++H f   ++e                  +++  vD+++g++l+ lde+g+++et ++ v+DHG + v
    CCE31558.1 434 KERVFLTHLTST--SHHPFKMPDEEvyvplasgdsledvshYVNTVGFVDRWLGRILDILDEQGVADETLVVMVGDHGLSVV 513
                   444444444443..4444432233345555555555555555678999******************************9866 PP

>> DUF229  Protein of unknown function (DUF229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.4e-07    0.0056     306     346 ..     472     512 ..     414     593 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.4e-07
      DUF229 306 dkfnllealDedllkylkklekkgllentlvlllsDHGlrf 346
                 +++n ++ +D  l ++l  l+++g+ ++tlv++++DHGl +
  CCE31558.1 472 HYVNTVGFVDRWLGRILDILDEQGVADETLVVMVGDHGLSV 512
                 345555556*****************************855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4883.49
//
Query:       CCE31559.1  [L=423]
Description: probable adenylosuccinate synthase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.2e-167  555.4   0.0   9.2e-167  555.2   0.0    1.0  1  Adenylsucc_synt  Adenylosuccinate synthetase


Domain annotation for each model (and alignments):
>> Adenylsucc_synt  Adenylosuccinate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  555.2   0.0  5.1e-171  9.2e-167       1     419 []       3     419 ..       3     419 .. 0.98

  Alignments for each domain:
  == domain 1  score: 555.2 bits;  conditional E-value: 5.1e-171
                      .EEEE-SSS-S-HHHHHHHHHTT-SEEEE-SB-TTSSEEEEETTEEEEESSS-GGGGSTT-EEEE-TTBEE-HHHHHHHHTTSS-TT......T CS
  Adenylsucc_synt   1 vvvvGaqwGDEGKGkivDllaeeadvvvRfqGGanAGHtvvvdgkkyklhllpSGilnpgvvnviGngvvvdpealleEieeleakgvelsker 94 
                      ++v+G+qwGDEGKGk++D+l++++++++R++GG+nAGH ++++g +y++hllpSG++np++vn+iG+gv+++++++++E+ el+++g+++ ++r
       CCE31559.1   3 TIVLGSQWGDEGKGKLTDILCSNTKLCARAAGGHNAGHSIIANGVSYSFHLLPSGLVNPHCVNLIGSGVLFHVPSFFKELGELHEEGLDT-TDR 95 
                      68**************************************************************************************88.7** PP

                      EEEETTSEE--HHHHHHHHHHHHH----------TTHHHHHHHHHTT---BGGGGGSHHHHHHHHHHHHHHTHHHHHHT...T-----HHHHHH CS
  Adenylsucc_synt  95 llisdrahlvlpyhkalDkleeaakgkkkiGtTkkGiGpayadkvarrgirvgdlldeeeleeklekllelknkllekldkeeleveelleell 188
                      +l+sdr+++ +++h a+D+lee + g++kiGtT++GiGp  ++k+ar+g+rv++++de ++e+kl++l++ ++k + +l   +++vee +++++
       CCE31559.1  96 ILVSDRCQVNFDLHAAVDGLEEIELGERKIGTTGRGIGPSASTKFARSGVRVHEIFDEPTFERKLRQLASSYKKRYGDLL--KYDVEEEVARFK 187
                      ************************999******************************************77776666665..677888888999 PP

                      HHHHHHGGGEE-HHHHHHHHHHTT--EEEE--S-GGG-TTTSSTTSS-SS--SHHHHHHHTT--GGGEEEEEEEEESSEEESSSS--TTB--SH CS
  Adenylsucc_synt 189 kyaerlkpyvvdtvallnealkegkkvLfEGaqgtllDidhGtYPfvTsSnttaggaltglglapkkidevlgvvKAyttrvGeGpfptelkde 282
                      +y+ +l+py +d+v+++++a ++++k+L+E+a++++lDid+GtYP+vTsSnt +gg++tgl ++p ki++v+gvvKAyttrvG Gpf+te  +e
       CCE31559.1 188 EYRVKLAPYCIDAVQFMKDAQDRNEKILIEAANALMLDIDYGTYPYVTSSNTGLGGIITGLAINPAKIENVIGVVKAYTTRVGGGPFKTEDLEE 281
                      ******************************************************************************************77** PP

                      HHHHHHHHTT-B-TTT--B-EEE-EEHHHHHHHHHHHT-SEEEEE-GGGGTT-SEEEEEEEEE.ETTEEESS--S.....-GEEEEEEEEE--. CS
  Adenylsucc_synt 283 vgeklrekGkEfgtttgrpRrcGwlDlvllryavrvngvtelaltklDvldgldeikvcvaYk.ldgkeldefpasleelekvepvyeelpgWk 375
                      +g+kl+++G+E+g+ tgr+RrcGwlDlv+l+y++++n++t l+ltklDvld++++ikv+v+Yk  +gkeld+fpa+l  l+k+++vy+e++gW+
       CCE31559.1 282 AGTKLQDIGREWGVSTGRKRRCGWLDLVVLKYSHAINHYTRLNLTKLDVLDTFPTIKVAVGYKsPEGKELDYFPADLGYLDKCDVVYKEFEGWQ 375
                      **************************************************************9899**************************** PP

                      S--TT---GGGS-HHHHHHHHHHHHHHTS-EEEEE-SSSTT-EE CS
  Adenylsucc_synt 376 edisgvrsfedlpenakkyvefieellgvpvkiisvGpereqti 419
                      + +++v+++ dlp++a++yvefie+++gv++++i++Gp+r+++i
       CCE31559.1 376 KPTTHVKNYYDLPKQAREYVEFIESFVGVKIAWIGTGPSRDDMI 419
                      ******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3142.61
//
Query:       CCE31560.1  [L=990]
Description: probable DNA ligase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-44  152.5   0.0    2.3e-44  151.5   0.0    1.6  1  DNA_ligase_A_M   ATP dependent DNA ligase domain
    2.9e-41  141.7   0.0    5.9e-41  140.7   0.0    1.5  1  DNA_ligase_A_N   DNA ligase N terminus
    9.7e-18   65.0   0.0      2e-17   63.9   0.0    1.6  1  RNA_ligase       RNA ligase
    2.5e-12   47.2   0.6    8.2e-12   45.6   0.0    2.2  2  DNA_ligase_A_C   ATP dependent DNA ligase C terminal region
    1.2e-11   44.8   0.0    1.8e-07   31.5   0.0    2.5  2  BRCT_2           BRCT domain, a BRCA1 C-terminus domain
    5.1e-07   30.0   0.2      1e-05   25.8   0.0    2.7  2  BRCT             BRCA1 C Terminus (BRCT) domain
     0.0023   18.0   0.0     0.0059   16.7   0.0    1.6  1  DNA_ligase_IV    DNA ligase IV
     0.0097   15.7   0.1       0.21   11.4   0.0    2.4  2  mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain


Domain annotation for each model (and alignments):
>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5   0.0     1e-47   2.3e-44      18     204 .]     312     515 ..     289     515 .. 0.89

  Alignments for each domain:
  == domain 1  score: 151.5 bits;  conditional E-value: 1e-47
                     TTSEEEEEEEESSEEEEEE......E.ETTEEEEEETTS-B-GG........GCHHHHHHHHHHBSTTESEEEEEEEEEEEETTTTCBEHHHHHC CS
  DNA_ligase_A_M  18 eekafivEiKyDGeRaqvh......k.egdkvklfSRrlkdita........akpelvkalkeafkkdeksvilDGElvavdketgeilpfqkla 97 
                     + ++f++E+K+DGeR+q+h         g+++ + SR+ kd+t+        +  +l+ +lk+af   ++++ilDGE++++d   ++i+pf++l+
      CCE31560.1 312 DDAEFWIEEKLDGERMQMHmvedsaHpGGKRFCFWSRKAKDYTYlygdglfdSTSSLTRHLKNAFVSGVRNLILDGEMITWDMSVDKIVPFGTLK 406
                     56899**************44333312357899*******************99***************************************** PP

                     HHH.HCHC.CTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEEESSHHHHHHHHHHHHHTTECEEEEEETT-C CS
  DNA_ligase_A_M  98 srk.kkkk.kveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaeslevkdveeleelleeaiseglEGlvvKnpdsk 190
                     s +  +++ + ++ ++  ++ + vFDiLyl+g++lt+++l++R k Le+++k+   r+e+++    ++ + +e +l+ ++++ +EGlv+Knp s 
      CCE31560.1 407 SAAlAEQHnQSASDASGHRPLFRVFDILYLNGKPLTQYTLRDRHKALEKVVKSVHRRLEVHTYVAATSPDAIEPMLRDVVANASEGLVLKNPRSM 501
                     ***98888446667788899*************************************************************************** PP

                     C-TTCEEEEEEEEE CS
  DNA_ligase_A_M 191 YepgkrsknwlKvK 204
                     Y+  +r+++wlKvK
      CCE31560.1 502 YRLNSRNDDWLKVK 515
                     *************9 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   0.0   2.6e-44   5.9e-41       1     173 []      43     247 ..      43     247 .. 0.91

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 2.6e-44
                     BCH.HHHHHHHHHCC.---HH..................HHHHHHHHHHHTS-..SHHHHHHHHHHSS-CCC.S-.-----HHHHHHHHHHHHT- CS
  DNA_ligase_A_N   1 pFa.elaelfekieestkkrl..................ekrailanffrkvesagpedlypalrLllPdyd.gr.eygigesllakalaealgl 74 
                     pF+ ++ +lf+ +++ +k++                   ++r i+++f++ ++++  +d+ypalrL+lPd+d  r +yg++e++l k+l+++l++
      CCE31560.1  43 PFSeLFLQLFNPLKDAKKQPGaqarkkghpgatslspheQRRHIIERFISRWRKEVGNDFYPALRLILPDKDsARgVYGLREHVLGKLLVKLLKI 137
                     6887899********4444448899999*********9999********5555555569************************************ PP

                     -HHHHHHH................HHHHS-HHHHHHHHHCCHHHH------BHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHHS-HHHHHHHHH CS
  DNA_ligase_A_N  75 skkkikda................lakvgDlgevaeevlskrstlakkspltieevnelLdklaaagkgsedekkkilkkllkraspeEakylir 153
                     +++ ++d                 l  +gD++  ++ev+skr+++++ + +ti+evne+Ldklaa  ++ ++e  ++l+ +++r+++eE+ +lir
      CCE31560.1 138 DRN-SEDGhnllhwrlpgqtmaarL--AGDFAGRCYEVISKRPMRTEVGGMTIAEVNEQLDKLAA--STGDAENLRVLETFYNRMNAEEMLWLIR 227
                     *99.999899999999999986433..7***********************************94..4568999********************* PP

                     HHCT---SS--HHHHHHHHH CS
  DNA_ligase_A_N 154 iilkdlriglsektvldala 173
                     iilk+l++g++ekt+++ ++
      CCE31560.1 228 IILKQLKVGATEKTFMHLWH 247
                     ******************99 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   9.1e-21     2e-17       2     161 .]     315     515 ..     314     515 .. 0.69

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 9.1e-21
                 EEEEEEE-SSEEEEEEEETTEEEEETTCEBCTTTHHHHHHTHHHHHHHH...........HHHHH........ECCEEEEEEEES......SS...... CS
  RNA_ligase   2 evvvtEKlDGtnfriylvkevgvasRsqilpfgeekfkefkrwaaalrk...........klkekla......neelilyGElig.....hsi...... 72 
                 e++++EKlDG+++++++v+        +   +g ++f+ ++r+a+++++            l+++l+      +++lil GE+i+     ++i      
  CCE31560.1 315 EFWIEEKLDGERMQMHMVE-------DSAH-PGGKRFCFWSRKAKDYTYlygdglfdstsSLTRHLKnafvsgVRNLILDGEMITwdmsvDKIvpfgtl 405
                 89***************97.......3333.789999*****************99999988888889999**889*********55444333533333 PP

                 ..TTSS....................EEEEEEEEEEECTTBECE--HHHHHHHHH...CCT.B..EEEEE.SS.HHHHHCCC....H.HHHTC--EEEE CS
  RNA_ligase  73 kygglpk...................efyvFdifdirdkeeqrylspdevealak...glg.tvpvlyegkfl.aaeellel...ll.skgnkrEGlVi 143
                 k     +                    f vFdi+ +++k   +y  +d+ +al+k   +++    v  ++++    ++   +   l     n +EGlV+
  CCE31560.1 406 K-----SaalaeqhnqsasdasghrpLFRVFDILYLNGKPLTQYTLRDRHKALEKvvkSVHrRLEVH-TYVAAtSPDA---IepmLRdVVANASEGLVL 495
                 0.....1555556677778889967777777777776444344444444444444111333322222.2222212233...14332245799******* PP

                 EESSSSBE.TTE.BSEEEEE CS
  RNA_ligase 144 kpeselyk.nkg.raifKvk 161
                 k+++++y+ n++ ++++Kvk
  CCE31560.1 496 KNPRSMYRlNSRnDDWLKVK 515
                 ******************98 PP

>> DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   3.7e-15   8.2e-12       1      99 []     540     662 ..     540     662 .. 0.81
   2 ?   -2.3   0.2       3.1     7e+03      28      58 ..     668     699 ..     665     708 .. 0.60

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 3.7e-15
                     GGGSEEEEEEEEEE......TTE.....EEEEEEE-SS--HHHHHHHHHHHG....GGEECTTCE......SS---HHHHTTEEE-TT-EE..EE CS
  DNA_ligase_A_C   1 rgglvgslllgvyd......dgk.....leyvgkvgtGfsdaeleelrkklk....elerkkppf......aekvpeeekrdvWvePelvv..eV 72 
                     rgg+++s+l+g++                 ++ kvg Gf  ++++e+r+  +    e++rk+pp        ++  + e++d W++P++++    
      CCE31560.1 540 RGGTLSSFLCGLRAsqnhiqA-GedpekCFSFFKVGGGFRSEDYAEVRHLTEgkwlEWDRKNPPTryielgGGESRQFERPDLWIRPKDSIvvSA 633
                     67999******8885444441.04566666777******************99***********998888777777777788******9883355 PP

                     EESEEECTSSSTT..EECT-EEEEE-TTS CS
  DNA_ligase_A_C  73 kfaeitasgkyka..slRfPrfkrlReDk 99 
                     k+a + +s+++    +lRfPrf+rlR D+
      CCE31560.1 634 KAASVAPSDSFARgyTLRFPRFRRLRLDR 662
                     6777888887777*************995 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.1
                     --HHHHHHHHHHHG.GGEECTTCESS---HHH CS
  DNA_ligase_A_C  28 fsdaeleelrkklk.elerkkppfaekvpeee 58 
                     +s +e eel+k+++ e+++k   +++++ +++
      CCE31560.1 668 LSVDEFEELKKRVDeEAKEKAMTLEDRKRRNP 699
                     56778999999996355555555544444443 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0     8e-11   1.8e-07       2      76 ..     727     808 ..     726     817 .. 0.79
   2 !   10.7   0.0   0.00023      0.52      19      84 ..     907     987 ..     890     988 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 8e-11
      BRCT_2   2 sklFeglrFYin...daepspsreklkklIeknGGevvetitsa.vyiviaesneee...laekrkrrvvspkyIkdCikkg 76 
                 +k+F gl F +     +  ++++ +l+++I++nGG v++   ++ +++++a ++  +   l++  + ++++pk+IkdC+++ 
  CCE31560.1 727 TKVFAGLEFCVLsesLKPYKKTKTQLEAIIRENGGAVSQRVLPDsNMVLVADKKVVKvasLIKIGGVNIIRPKWIKDCLEQD 808
                 78999****998875334449****************988866625555555555559999999***************985 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00023
      BRCT_2  19 psreklkklIeknGGev....vetitsavyiviaesneee............laekrkrrvvspkyIkdCikkgkllpleny 84 
                 +  +kl +  +  GG+v    +e+   ++++++   +  e            ++ +r +rvv  ++I  C +++++l+ e +
  CCE31560.1 907 NLVNKLVRYLKYAGGRVegclEEKFAISHVVLVGDDEM-EvgamadevrstiSSWERVPRVVGQQWILGCWREKTVLDEEAF 987
                 6678999999******9765433333333333333333.257888888888889999*********************9865 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   4.6e-09     1e-05       2      79 .]     726     805 ..     725     805 .. 0.88
   2 ?    1.3   0.0       0.2   4.6e+02       5      48 ..     890     937 ..     886     976 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 4.6e-09
                 TTTTTTTEEEEE...EESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT   2 kellfhgckfvi...tgvldnftrdeleelikehGGkvttevskktthlvvgepesrslkylealklnipivheewlldci 79 
                 k ++f g+ f++     +    t+++le +i+e+GG v+++v ++ + ++v +  +  +  +  +  ++ i++++w++dc+
  CCE31560.1 726 KTKVFAGLEFCVlseSLKPYKKTKTQLEAIIRENGGAVSQRVLPDSNMVLVADK-KVVKVASLIKIGGVNIIRPKWIKDCL 805
                 5799********965444455677788************************999.888888899999*************7 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.2
                 TTTTEEEEE..EESTSSHHHHHHHHHHHHTTCEEESSCSTT..SSEEE CS
        BRCT   5 lfhgckfvi..tgvldnftrdeleelikehGGkvttevskk..tthlv 48 
                  f+ c++++   g+ d    ++l + +k  GG+v +++ +k  ++h+v
  CCE31560.1 890 MFQRCVVHVrvVGGGDANLVNKLVRYLKYAGGRVEGCLEEKfaISHVV 937
                 578888888777888888888889999999999988885542255555 PP

>> DNA_ligase_IV  DNA ligase IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.6e-06    0.0059       6      28 ..     832     854 ..     829     858 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.6e-06
  DNA_ligase_IV   6 akEYDeYGDSYtvDtdeeqLKev 28 
                    a++ D YGDS+  D+  e+L+ +
     CCE31560.1 832 AENTDMYGDSFARDVSLEELRNI 854
                    7899*****************87 PP

>> mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.088     2e+02      14      46 ..     312     349 ..     296     399 .. 0.59
   2 !   11.4   0.0   9.2e-05      0.21      90     130 ..     425     465 ..     416     509 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.088
                      HHS-EEEEEEESSEEEEEEEEECT.....EEEEEEETT CS
  mRNA_cap_enzyme  14 kqkkYvvseKaDGiRylmllteee.....egvylidRe 46 
                      ++ ++ + eK DG R+ m ++e++     +   +  R+
       CCE31560.1 312 DDAEFWIEEKLDGERMQMHMVEDSahpggKRFCFWSRK 349
                      456788999*********99998766666333333444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 9.2e-05
                      EEEEEEEEEEEETTEEGTTSBHHHHHHHHHHHTHHHHHHHH CS
  mRNA_cap_enzyme  90 elryliyDivaingvtvaeeplskRleilkkelikprneek 130
                      ++ + ++Di+ +ng+ +++  l +R ++l+k +++++ + +
       CCE31560.1 425 RPLFRVFDILYLNGKPLTQYTLRDRHKALEKVVKSVHRRLE 465
                      566889*************************9999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (990 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 6510.37
//
Query:       CCE31561.1  [L=226]
Description: related to uracil phosphoribosyltransferase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.9e-72  240.7   0.0    1.1e-71  240.5   0.0    1.0  1  UPRTase         Uracil phosphoribosyltransferase
    1.6e-06   27.7   0.1    2.6e-06   27.0   0.1    1.4  1  Pribosyltran    Phosphoribosyl transferase domain
     0.0029   17.6   0.1     0.0058   16.7   0.0    1.6  2  Pribosyl_synth  Phosphoribosyl synthetase-associated domain


Domain annotation for each model (and alignments):
>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.5   0.0   1.9e-75   1.1e-71       2     207 .]       9     223 ..       8     223 .. 0.96

  Alignments for each domain:
  == domain 1  score: 240.5 bits;  conditional E-value: 1.9e-75
     UPRTase   2 sshpllkakltilRdastsrkdfrelvdriarllaeealsallpveev..tvttplgkeysgelldeekialVpilRaGegmeealrellpea.rvghl 97 
                 s+hp lkakl++lR++st+++d+++lv++i+++la+eal+a l+  +    ++tplg ey++ +  +++i++VpilR+G+gm++a++++lp a +v+hl
  CCE31561.1   9 SNHPSLKAKLSQLRSHSTTSRDVKTLVHDISLILACEALAANLSSHDGpkVDKTPLGFEYTTSTVGPQTICIVPILRSGLGMVDAIQTILPLAvPVHHL 107
                 78***************************************999987664789********************************************** PP

     UPRTase  98 glqreeetlepveyynkLPkki..aert.....vlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefp.kvkvvtaavDeeld 188
                 g++re++tl++veyyn+LP++i  +++t     ++++Dp+iaTGg+++aaiq+L+e  +g +kIlvls+l +eegv+++aee+p ++++++a+++++l+
  CCE31561.1 108 GMYREPATLDAVEYYNNLPHHIpgSNDTaasslAIVVDPIIATGGTCVAAIQTLRE--WGAKKILVLSILGAEEGVRKAAEEWPeGTELWIAGLESKLT 204
                 **********************75444499999***********************..7789**********************99************* PP

     UPRTase 189 ekgyivpGlGDfGDRlFgT 207
                  +g++ pGlGD+GDRlF+T
  CCE31561.1 205 REGMLEPGLGDIGDRLFLT 223
                 *****************98 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   4.4e-10   2.6e-06      14     128 ..      43     179 ..      30     195 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 4.4e-10
                   EEEETTEEEEEE--GGGE..................EEEEEETTTHHHHHHHHHHS...........TT-EE-EEEEEE-TTT--EE........EE CS
  Pribosyltran  14 avarlaaeileeyngkpd..................vvvgiargGvpfakiladeL...........evplayvrkvkyrpdgseeaargssdesrl 81 
                   a++ laa+++++++ k d                   +v+i+r G+ +++++   L             + a +++v y+++    ++         
    CCE31561.1  43 ACEALAANLSSHDGPKVDktplgfeyttstvgpqtiCIVPILRSGLGMVDAIQTILplavpvhhlgmYREPATLDAVEYYNNLPHHIP--------G 131
                   5666666666666666666666666666666666669*******************55555555544444444444455544444444........6 PP

                   ----TTSE.EEEE-SEESSSHHHHHHHHHHHCC-BSEEEEEEEEE-HH CS
  Pribosyltran  82 ledpagkk.VliVDDildtGgTllaalelLkekgpeevriavlvdkpa 128
                   + d+a ++  ++VD i++tGgT  aa++ L+e g++++ +  ++   +
    CCE31561.1 132 SNDTAASSlAIVVDPIIATGGTCVAAIQTLREWGAKKILVLSILGAEE 179
                   6666665537**************************997777765544 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.5   9.2e+03     157     167 ..      31      43 ..      23      48 .. 0.60
   2 !   16.7   0.0   9.7e-07    0.0058      83     121 ..     138     176 ..     111     187 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.5
                     EEEE..--HHHHH CS
  Pribosyl_synth 157 iktv..disllla 167
                     +kt+  disl+la
      CCE31561.1  31 VKTLvhDISLILA 43 
                     4443348888875 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 9.7e-07
                     TSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE CS
  Pribosyl_synth  83 GriaiivddliddvesfvaaaevlkerGaykiyvlathG 121
                       +ai+vd +i    + vaa ++l+e Ga ki vl+  G
      CCE31561.1 138 SSLAIVVDPIIATGGTCVAAIQTLREWGAKKILVLSILG 176
                     568*******************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1781.49
//
Query:       CCE31562.1  [L=438]
Description: uncharacterized protein CPUR_05415 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-37  125.4  20.8    2.6e-22   78.9  10.3    2.4  2  CRCB      CrcB-like protein, Camphor Resistance (CrcB)


Domain annotation for each model (and alignments):
>> CRCB  CrcB-like protein, Camphor Resistance (CrcB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   2.7   3.8e-18   6.9e-14       3      85 ..      97     250 ..      95     260 .. 0.68
   2 !   78.9  10.3   1.5e-26   2.6e-22       2      94 ..     315     423 ..     314     425 .. 0.86

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 3.8e-18
                 HHHHHHHHHHHHHHH.HHHHBE....BHHHHHHHHHHHHHHHHHHH.................H.................................HT CS
        CRCB   3 valggalGallRyllssllnkr....plgtlavNvlGsfllgllla.................l.................................lt 47 
                 ++++++lG+l+R++ls l+  +    ++  +++N+ G++++g+l++                 l                                 lt
  CCE31562.1  97 LVFFAILGTLARLGLSALTSYAntpvLFTGIWANFGGCVIMGFLIEdqilfqqkwrpasdngvLtpapeqnqqdgashtaakkahvaykktvplyigLT 195
                 689************66555448876567799***********999998877776666666650555555666666666667777777777777888** PP

                 TTHHHHHS-SHHHHHHHHHHHHHT-HHHHH...................HHHHHHHH CS
        CRCB  48 tGflGglTTfStfvlelvslleegellaal...................lyvllsvv 85 
                 tGf+G++T fStf+ +++  +++   +                      + v+++vv
  CCE31562.1 196 TGFCGSFTSFSTFIRDVFLAMSNDMSA--PgrgvapesrnggysflamaAVVITTVV 250
                 *****************9977554222..1234566665554443333233333444 PP

  == domain 2  score: 78.9 bits;  conditional E-value: 1.5e-26
                 HHHHHHHHHHHHHHHH.HHHHBE....BHHHHHHHHHHHHHHHHHHH.........H.......HTTTHHHHHS-SHHHHHHHHHHHHHT-HHHHHHHH CS
        CRCB   2 lvalggalGallRyllssllnkr....plgtlavNvlGsfllgllla.........l.......lttGflGglTTfStfvlelvslleegellaallyv 80 
                 +++++++lG+l+Ry+l+ +ln++    plgtla+N++G+++lg++++         l       + +Gf+G+lTT+St+v+el sl +++    a +y+
  CCE31562.1 315 FALVFAPLGCLTRYGLALWLNGKtaalPLGTLAANITGTAVLGMAWDlahvrsggiLgcqvlqgVEDGFCGCLTTVSTWVAELNSLGRRS----AYMYG 409
                 789*************9999999***989***************99966666555505555566*********************98765....78999 PP

                 HHHHHHHHHHHHHH CS
        CRCB  81 llsvvlgllavvlg 94 
                 l+sv+++++++vl+
  CCE31562.1 410 LTSVLVSFAIMVLI 423
                 99**9999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3173.64
//
Query:       CCE31563.1  [L=825]
Description: uncharacterized protein CPUR_05416 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-13   50.7   0.0    3.5e-13   49.6   0.0    1.7  1  DUF4470   Domain of unknown function (DUF4470)
      6e-05   23.1   1.9      6e-05   23.1   1.9    2.5  2  zf-MYND   MYND finger


Domain annotation for each model (and alignments):
>> DUF4470  Domain of unknown function (DUF4470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   3.9e-17   3.5e-13       2      97 ..     235     332 ..     234     333 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 3.9e-17
     DUF4470   2 wGntpaldllqllkedeen......dlniLllgsgDlRhvlktiaslkpssksrklditlndneaeivaRnlllLslllepddslgleeaaellleiwy 94 
                 wG + a+d+++l+k  +++      +lniLl g   lRh+++++ +l p++++++l++tln +++  + R++  L+ll+ +++ ++  ++ae+l+++wy
  CCE31563.1 235 WGSYAATDVIRLSK--QTEgpafdgQLNILLSGVFPLRHMIYSVINL-PRTSNPRLKFTLNATSFFDFRRTFHGLALLCLSRN-DDMIKNAEALIHMWY 329
                 ************63..333567888**********************.****************************9997655.46789********** PP

     DUF4470  95 sll 97 
                 s+ 
  CCE31563.1 330 SSR 332
                 986 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   2.0      0.37   3.3e+03       1      16 [.      22      36 ..      15      42 .. 0.69
   2 !   23.1   1.9   6.6e-09     6e-05      18      38 .]     187     207 ..     172     207 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.37
                -TTT--.B-SCE-TTT CS
     zf-MYND  1 CavCgkaealkkCagC 16
                C+ C+   ++  C  C
  CCE31563.1 22 CSDCKS-SVEVACRIC 36
                666666.555566666 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 6.6e-09
                 -SEESSHHHHHHCHHHHCCCH CS
     zf-MYND  18 svfYCskeCqradwksHkteC 38 
                 s +YCs+eC+ a+w++H+ +C
  CCE31563.1 187 SSQYCSSECRDAHWSKHQVDC 207
                 568****************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5649.78
//
Query:       CCE31564.1  [L=157]
Description: uncharacterized protein CPUR_05417 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00062   20.4   0.0     0.0013   19.4   0.0    1.5  1  SnoaL_2   SnoaL-like domain


Domain annotation for each model (and alignments):
>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   7.1e-08    0.0013       2      88 ..      13     103 ..      12     119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.1e-08
                 HHHHHHHHTTCHHHHHHTEEEEEEEE.ET...TSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEET.TEEEEEEEEEEEEETTSSEEEEEE CS
     SnoaL_2   2 raflaalnagdldalaalfapdvvwe.dp...ggelrGreairaffralfaafpdlrfeihdvvadg.drvavewtvtgtipatgrgvtvrg 88 
                 ++f+a +    ++ + a++++d+++   p   g + rGre++   + +l   +  ++ +ih+ + d  +++av + v     +   +++++ 
  CCE31564.1  13 KRFIAGWGGWTMESFFATLSDDFTQKpLPlscGEPARGREQLYPLLSSLMTMMTNFKLTIHNTIHDPsNKAAVVYAVAD-GDTPFGPYHNEQ 103
                 69999********************9644666667****************************9997356666665543.444444555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1145.70
//
Query:       CCE31565.1  [L=292]
Description: related to peroxisomal short-chain alcohol dehydrogenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-32  112.4   1.4    2.2e-32  112.1   1.4    1.1  1  adh_short        short chain dehydrogenase
    1.5e-23   83.6   3.1    2.4e-23   82.9   3.1    1.3  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    5.3e-14   52.5   2.6      1e-13   51.6   2.6    1.4  2  KR               KR domain
    1.6e-11   43.9   0.2      2e-11   43.6   0.2    1.0  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.9e-06   27.5   2.3      5e-06   26.2   2.3    1.6  1  Epimerase        NAD dependent epimerase/dehydratase family
      0.003   17.3   0.2     0.0057   16.4   0.2    1.5  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
     0.0033   16.5   0.4      0.028   13.5   0.4    2.0  1  RmlD_sub_bind    RmlD substrate binding domain
     0.0065   15.9   1.6      0.049   13.0   1.6    1.9  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
      0.025   13.8   0.7      0.076   12.2   0.6    1.7  2  NAD_binding_4    Male sterility protein
       0.22   10.9   6.6          3    7.1   0.2    2.7  3  ThiF             ThiF family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   1.4   1.2e-35   2.2e-32       1     188 [.      40     227 ..      40     232 .. 0.93

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 1.2e-35
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfse 95 
                 k+vl+tG+ssGIG+ iak++a +G+  ++ ++rs ++  ++++e++++  ++++l +++ vtd+++   ++    ++l +++vLv +A+  + ++p +e
  CCE31565.1  40 KTVLITGGSSGIGLSIAKAFAGAGVARIAiLSRSRATQLTAKAEIEAAypSTSILLFEASVTDADRFASVL----EELAGVHVLVLCAAAvHARVPLAE 134
                 79**********************8777769******************99***********999876655....5669*******998889******* PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT..EEEEEEEESSBSSHHHH CS
   adh_short  96 lseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptg..irvnavaPGlvdTdmak 188
                 ls ++++ v+++N +++++l+r+ + +   ++  +I  vsS ++++  +  ++Y+AsKaa ++ ++ la+e++ tg  +rv + +PG++ T+   
  CCE31565.1 135 LSGKDVQHVFDTNSVSTVNLARLYTAT--PGKDKTILHVSSAVAQMYAPLRSVYGASKAAAVQAMQHLAREHQGTGdrVRVFSFHPGAITTPASG 227
                 ***********************9999..789999****************************************99**************9876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   3.1   1.3e-26   2.4e-23       3     185 ..      48     232 ..      46     264 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 1.3e-26
                   TTSHHHHHHHHHHHTT.-EEEEEESSGGH.HHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   3 asgIGraiAkalaeeG.aevvltdlneea.kkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                    sgIG  iAka+a +G a++++  ++++    + +e++++++++ +  +e+ Vtd +  +++ ee    + ++++lv +a+ +++ + p++e+s ++
    CCE31565.1  48 SSGIGLSIAKAFAGAGvARIAILSRSRATqLTAKAEIEAAYPSTsIllFEASVTDADRFASVLEE----LAGVHVLVLCAAAVHA-RVPLAELSGKD 139
                   59**************668******99997777888889999886568*******9987766655....6799***********9.9********** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG..GTEEEEEEEE--BHCTGGGGSTTH CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgp..kgiRvNavspgpikTlaasgikgf 185
                   +++++d+n  s+++la+       +   i+++ss  a+++ p  ++yga+Kaa ++ ++ lA+e     +++Rv + +pg+i T+a+ +i   
    CCE31565.1 140 VQHVFDTNSVSTVNLARLYTATPGKDKTILHVSSAVAQMYAPLRSVYGASKAAAVQAMQHLAREHQGtgDRVRVFSFHPGAITTPASGAIYTP 232
                   ****************************************************************9885578999************9999754 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   2.6   5.8e-17     1e-13       2     169 ..      41     210 ..      40     220 .. 0.81
   2 ?   -2.9   0.0       2.9   5.3e+03     147     176 ..     260     289 ..     257     291 .. 0.78

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 5.8e-17
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---E.EEE---------TTT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikG.vihaAgvlrdkllee 99 
                 t+litGG  g+Gl++a+  a  g +++++lsRs a++ ++ka+i++ +   +++ +++a v+d+d  +++lee+      ++  v+ aA v +  +l+e
  CCE31565.1  41 TVLITGGSSGIGLSIAKAFAGAGVARIAILSRSRATQLTAKAEIEA-AYPSTSILLFEASVTDADRFASVLEELA----GVHVlVLCAAAVHARVPLAE 134
                 78*******************************7777777766664.44499**********************8....4444166677888899**** PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHH....HHHHHHHHHHHHHHHHHHHT CS
          KR 100 mtaedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanY....aaaNaflDalaeyrrsqglp 169
                 ++ +d+++v+      + nL +l +    + + ++ +SS+ + + ++ ++ Y    aaa + +  la++ + +g +
  CCE31565.1 135 LSGKDVQHVFDTNSVSTVNLARLYTAtpGKDKTILHVSSAVAQMYAPLRSVYgaskAAAVQAMQHLAREHQGTGDR 210
                 **********************998855667889999**9999999999999332234555666666666666655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHHHHHHHHHHHTEEEEEE- CS
          KR 147 anYaaaNaflDalaeyrrsqglpavsinwg 176
                 + Y  aN  +D l++ ++++++ +  + +g
  CCE31565.1 260 GRYVWANWDVDELVALKERLACDGRFLTIG 289
                 579999999999999999988877666665 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.2   1.1e-14     2e-11       1     160 [.      42     208 ..      42     217 .. 0.78

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 1.1e-14
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT...T-SE..EEE------HH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel.kvdv..vfhaAAlKhVP 91 
                      vl+tG++  iG ++ + ++   +++i +l+r+  ++ + + e+e+ + ++++ ++     ++v+d++r +++leel +v+v  +  aA + +VP
       CCE31565.1  42 VLITGGSSGIGLSIAKAFAGAGVARIAILSRSRATQLTAKAEIEAAYPSTSILLF----EASVTDADRFASVLEELaGVHVlvLCAAAVHARVP 131
                      89****************************************9999998777444....688899998888888752455410344455678** PP

                      HHH...HSHHHHHHHHHHHHHHHHHH..HHHTT-SEEEEEEEGGG..SS--.SHHHHHHHHHHHHHHHGGG--SSS- CS
  Polysacc_synt_2  92 lve...enpleaiktNvlgtenviea..aieagvkkvvliStDKA..vnPt.nvmGatKrlaekllqalakeseekk 160
                      l+e   + + ++++tN ++t n+++   a+  + k+++ +S+  A    P  +v+Ga+K++a + +q+la+e++ + 
       CCE31565.1 132 LAElsgKDVQHVFDTNSVSTVNLARLytATPGKDKTILHVSSAVAqmYAPLrSVYGASKAAAVQAMQHLAREHQGTG 208
                      **94334678899**********986225556777888899877732345448*****************9996655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   2.3   2.8e-09     5e-06       1     161 [.      42     205 ..      42     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.8e-09
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHH.T-SEEEE--S..---HHH...HHHSH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkee.qpdavihlAa..vggvaa...ssedp 84 
                 +l+tG++  iG  ++ka++ +g+  i++ ++s+a +  +++++          l e+ +td+++++ +++e  ++++ +++Aa   + v+    s +d 
  CCE31565.1  42 VLITGGSSGIGLSIAKAFAGAGVARIAILSRSRATQLTAKAEIeaaypstsiLLFEASVTDADRFASVLEELaGVHVLVLCAAavHARVPLaelSGKDV 140
                 79********************776666666566666666666789*****99******************9999999999774444444312266677 PP

                 HHHHHHHTHHHHHHHHHHHHH.TCT..EEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT CS
   Epimerase  85 adfieknlqgtlnlleaarka.gvk..rllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyg 161
                 + ++++n + t+nl+    ++ g k   +l++sS +v           ++   pl  +s Y+a+K+a+ + ++ +a++++
  CCE31565.1 141 QHVFDTNSVSTVNLARLYTATpG-KdkTILHVSS-AVAQM--------YA---PL--RSVYGASKAAAVQAMQHLAREHQ 205
                 78899***********9999954.4457778887.33332........22...44..99**************9999984 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   3.2e-06    0.0057      29      71 ..      28      69 ..      14      77 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.2e-06
                     HHHHS-----.-SEEEEESTSSHHHHHHHHHHHHS.S--EEEEE CS
  Eno-Rase_NADH_b 29 yvksqkkiekgpkkvLviGaStGYGLAsriaaafg.agadtigV 71
                      +++++ ++++ k+vL+ G+S+G GL+  ia af+ ag++ i +
       CCE31565.1 28 RISTRHGFNGTGKTVLITGGSSGIGLS--IAKAFAgAGVARIAI 69
                     556666677789**************8..888887577777766 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.4   1.6e-05     0.028       2     101 ..      41     173 ..      40     220 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE.-TT.......................T--TTSHHHHHHHHHHH-.-SEEEE---..---HHHHHHS CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlal.tre.......................eldltdaeavaellkeak.pdvvvnaAA..ytavDkaEse 70 
                    ++l+tG++  +G  +ak++a +g++ +a+ +r+                       e+ +tda++ a++l+e    +v+v +AA  + +v  aE  
     CCE31565.1  41 TVLITGGSSGIGLSIAKAFAGAGVARIAIlSRSratqltakaeieaaypstsillfEASVTDADRFASVLEELAgVHVLVLCAAavHARVPLAELS 136
                    69**************************95555889999999999999999999999999999999999988652456565554336778889976 PP

                    ...HHHHHHHHTHHHHHHHHHHHH...CT-EEEEEEE CS
  RmlD_sub_bind  71 ...eeaayavnaeavealAeaaaa...vgalLihvSt 101
                        ++ +  n+ ++ +lA++ +a    + +++hvS+
     CCE31565.1 137 gkdVQHVFDTNSVSTVNLARLYTAtpgKDKTILHVSS 173
                    3113344556888888888754331114667777775 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.6   2.7e-05     0.049       1     130 [.      43     174 ..      43     219 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE-.-S---HHH..... CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynL.AAqshVdv..... 90 
                    LiTG++  iG  +a+ +   g   + i  rs +++++  ++++    +  ++++ l+++ +tD+++  ++l+e     v+ L AA  h +v     
     CCE31565.1  43 LITGGSSGIGLSIAKAFAGAGVARIAILSRSRATQLTAKAEIEA---AYPSTSILLFEASVTDADRFASVLEELAGVHVLVLcAAAVHARVplael 135
                    9***************************9999999888888765...345679*********************9999988845556754433333 PP

                    HTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEG CS
  GDP_Man_Dehyd  91 sfekPeytaevnvlGtlrLLeairalglekkvrfyqaSts 130
                    s ++ + ++++n + t++L  +  a+   k++ ++++S++
     CCE31565.1 136 SGKDVQHVFDTNSVSTVNLARLYTATPG-KDKTILHVSSA 174
                    7889999************999988754.56677888885 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   4.3e-05     0.076      88     144 ..     116     181 ..     107     207 .. 0.70
   2 ?   -0.2   0.0      0.26   4.6e+02     172     195 ..     182     205 ..     178     240 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.3e-05
                    --EEEE--SS-S.STTSSE........EHHHHHHHHHHHHHHHTSSS--..-EEEEEEGGGTTS-T CS
  NAD_binding_4  88 vdviihsaAtvnfdepyke........llrvNveGtrevlelakklkkl.kvllhvSTayvngere 144
                    v+v + +aA v+   p+ e        ++++N  +t+++ +l +++  + k++lhvS+a+++ +  
     CCE31565.1 116 VHVLVLCAAAVHARVPLAElsgkdvqhVFDTNSVSTVNLARLYTATPGKdKTILHVSSAVAQMYAP 181
                    666666777777666554433333333899************886555547********9987765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.26
                    CCCHHHHHHHHHHHHHHHHHHHH- CS
  NAD_binding_4 172 lpntYeqsKalaEklvrearrrsg 195
                    l   Y  sKa+a + +++ +r+++
     CCE31565.1 182 LRSVYGASKAAAVQAMQHLAREHQ 205
                    66789******9999988887654 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.7     0.008        14      21      47 ..      42      69 ..      22      74 .. 0.85
   2 ?    7.1   0.2    0.0017         3      75     129 ..      78     135 ..      71     151 .. 0.81
   3 ?   -0.6   0.0      0.37   6.7e+02      46      66 ..     142     162 ..     135     179 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.008
                EEEE.--SHHHHHHHHHHHHHTTTEEEE CS
                xxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 21 vllv.GaGglGsellknLalsGvgkltl 47
                vl+  G  g+G  ++k++a++Gv ++ +
  CCE31565.1 42 VLITgGSSGIGLSIAKAFAGAGVARIAI 69
                55542689*****************987 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0017
                 HHHHHHHHHT-TTSEEEEEES-CCG.CC...S-HHHHTT-SEEEEESSSHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  75 evaaealqeinpdveveavteritd.et...vleellesvDlVvdalDniearrlvnra 129
                  +a++ +++ +p++++  +++++td +    v  e l +v + v++   + ar+ ++++
  CCE31565.1  78 LTAKAEIEAAYPSTSILLFEASVTDaDRfasV-LEELAGVHVLVLCAAAVHARVPLAEL 135
                 689**********************6664322.3456677999*********9987765 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.37
                 EEEESSB--GGGGGTBTTS-G CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        ThiF  46 tlvDnDkielsNlnRqflfre 66 
                 +++D   ++  Nl R + +++
  CCE31565.1 142 HVFDTNSVSTVNLARLYTATP 162
                 799************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2016.73
//
Query:       CCE31566.1  [L=534]
Description: uncharacterized protein CPUR_05419 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-25   89.4   0.0    6.8e-25   87.7   0.0    1.8  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   3.8e-29   6.8e-25       7     440 ..      64     501 ..      57     513 .. 0.86

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 3.8e-29
                 HHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHH CS
        p450   7 lplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltpt 105
                  pl+g++  ++r+  +++  + ++ k    f+++lg+ +vv +sg+ a k  l ++   + +r++ a l+   +p     + f  ++   k ++ + + 
  CCE31566.1  64 TPLIGSWGFYSRRWSFWR-DSVARSKT-GQFSFWLGKNHVVGVSGAAARKMFLDHQ---SLDRIKAAPLHG-IGPEIVPPIHFVHQPNFSKGHSYFQRR 156
                 577888888887666666.34444444.4589*************99999999999...588888888886.779999999999999999999999999 PP

                 HTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCH.HHTCCS CS
        p450 106 ltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfp.llkylp 202
                 +++  k   l +++   +++  + +r   +++++l+ t+     ++d++++++++ ++ ++  ++l +  +++e+++ +++     l+      + +lp
  CCE31566.1 157 VLDLMKTeHLASRLHAATREARTVFRGFPTKQTTLKGTRSGIVSPVDSCYRLVLSQSVRMMFCDELVDTHELFEKYVAFTHELQ-HLNSGHTcAVPWLP 254
                 99995555999***************9999999999999999999999999999999999999998888888888877774433.44444444777888 PP

                 CHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHC.SCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH CS
        p450 203 tkllrklkeavkklkdlldklieerretldsa.kksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklr 300
                 +    k +  + +l+ l  +l+e+r ++ + +  ++ +d l++l+++      +     +++++ ++ +lf ++ +        L  L +nP  q+++ 
  CCE31566.1 255 SLAHTKRRYYRHRLHCLFTPLVEKRLQSQQGRaGSRANDALQILVDNG-----D---ELDNIVTFLISVLFISIANAGKLAGVLLNILCQNPIWQDRVL 345
                 888888888889***************999998778999999999994.....4...579****************9999999999************* PP

                 HHHHHHCCTTT..............T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT..EEE-TT-EEEEEHHHHHT-TTTSSSTTS- CS
        p450 301 eEidevlgdkr..............eptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg..ylipkGtevivnlyalhrdpevfpnPeeF 383
                  Ei+ + ++                 p +   ++ p+++ +i+E+ R+h + p++   + ++ + i+g   ++p G+    n+   h +++++p+P +F
  CCE31566.1 346 SEINAATPKFWpadkpatlvekldgMPLEVWEASFPFVELIIREAIRMHVAFPMTRLNVSSRAIPIPGtgQVVPSGSFAAYNTNDAHLNEALYPDPLRF 444
                 *****99765567778887777775444445567899****************9999999*************************************** PP

                 -GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTS CS
        p450 384 dpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpe 440
                 dpeRF+  ++  k + + fl+ G+G++ C+G+r A+++l++ l+  +  +++  ++ 
  CCE31566.1 445 DPERFETPREGAKTETYGFLGWGNGRHRCVGQRWAKLQLSINLVYAVAMYKWNSCDA 501
                 ******9999778*******************************9999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3855.91
//
Query:       CCE31567.1  [L=296]
Description: uncharacterized protein CPUR_05420 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-11   44.3   0.0    3.7e-11   43.1   0.0    1.6  1  HSP20       Hsp20/alpha crystallin family
     0.0017   17.9   0.3     0.0047   16.4   0.3    1.8  1  ArsA_HSP20  HSP20-like domain found in ArsA


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   4.1e-15   3.7e-11       1     101 [.     179     295 ..     179     296 .] 0.85

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 4.1e-15
                 E--SSEEEEEEEEE-TT--CCCEEEEEETTE..EEEEEE--.............---TT----SS---EEEEEE--STTB-TTT-.....EEEEETTEE CS
       HSP20   1 dikeeeeefevkldvpglkkeelkvkvednr..vlvkgehe...........eeeedekglikerssrkFsrkftLPenvdadkv.....kaslkdGvL 81 
                 d++e++e+++v++ +pg kke++kv+ +  +  + ++g              + e+++++  +er+ +kF r++ L   vd dk+     +a ++dGvL
  CCE31567.1 179 DVVETPESYSVQASLPGAKKEDVKVSWDPSTyeLRIEGVVSrsvgndeegekKTEQSGRFSLRERQTGKFCRTVYLGSQVDGDKIeegglSAGMDDGVL 277
                 6899**********************9987666888887666677778888777888899999********************99444445889***** PP

                 EEEEEBSS--..-------- CS
       HSP20  82 tvtvpkkepekkkkerkiqi 101
                 ++ vp++ +   k +++i i
  CCE31567.1 278 RIAVPRQGSG--KGVKEITI 295
                 ******9998..46777765 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   5.3e-07    0.0047       3      61 ..     186     279 ..     184     281 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.3e-07
  ArsA_HSP20   3 eyvlkldLPfvdkeeidlsrsgdeLtIkig...............................nfrRqitLPsvlarkevt....sAkfedgvLeI 61 
                  y +++ LP+++ke++++s + ++  ++i+                               +f R++ L s +++++++    sA++ dgvL+I
  CCE31567.1 186 SYSVQASLPGAKKEDVKVSWDPSTYELRIEgvvsrsvgndeegekkteqsgrfslrerqtgKFCRTVYLGSQVDGDKIEegglSAGMDDGVLRI 279
                 699****************9977777777777*********************************************98555578889****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2401.69
//
Query:       CCE31568.1  [L=606]
Description: uncharacterized protein CPUR_05421 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.015   14.6   0.0      0.029   13.6   0.0    1.4  1  Kdo_hydroxy   3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydro
      0.029   13.4   1.2      0.058   12.4   1.2    1.6  1  Fungal_trans  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Kdo_hydroxy  3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.3e-06     0.029      42      98 ..      60     116 ..      44     124 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-06
  Kdo_hydroxy  42 kkkknisykpeedklkGvaaeeedqealkallkryseqaesliarllpeYakklkla 98 
                  ++ ++is +++    +G+ ++e++ ++l++++   s+q+ ++ia+ll eY+++++ +
   CCE31568.1  60 TTPQTISDQATGRPCEGADNTETAYDRLQQIIPSRSHQSVRVIAELLEEYTEAWQGS 116
                  344889999999999**************************************9865 PP

>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.2   6.5e-06     0.058      93     192 ..     229     319 ..     181     376 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.5e-06
  Fungal_trans  93 ilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpp.llddsqinlpLPcd 188
                    +q+L +l++y   + +   ++ ++  a+++ + lg   +           l+ +++  r  l+w   +lDk +al+l r p + ++ + ++++P  
    CCE31568.1 229 RIQALIILATYVEEFMTPCVCWSLITKACTMLQALGIVHWR----------LDTATSDVRAMLFWRLNMLDKALALILCRAPaFHREMSSQIAMPTL 315
                   69**********************************98555..........88999999999********************977888889999988 PP

  Fungal_trans 189 dddl 192
                    + +
    CCE31568.1 316 NRLM 319
                   8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4147.94
//
Query:       CCE31569.1  [L=577]
Description: probable aflatoxin efflux pump AFLT [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-46  158.0  50.4    2.9e-46  158.0  50.4    2.3  2  MFS_1     Major Facilitator Superfamily
    4.3e-06   25.9  16.6    4.3e-06   25.9  16.6    3.5  3  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.0  50.4   3.2e-50   2.9e-46       1     352 [.      63     465 ..      63     466 .. 0.89
   2 ?   -3.0   0.0      0.29   2.6e+03     307     318 ..     525     536 ..     493     544 .. 0.58

  Alignments for each domain:
  == domain 1  score: 158.0 bits;  conditional E-value: 3.2e-50
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlg 98 
                 ++la fl+a +r+i+++a+p  +++d++ s   +g+  ++y l++++++l++G l   +++r vll++l++f+++ +l+++ a+++ +++v+r+++G+g
  CCE31569.1  63 VFLAMFLVAVDRTIISTAIP-SITNDYN-SLNDVGWYGSIYLLTCCAFQLLFGKLYAMYSARVVLLVSLVIFLAAsALCGA-APNSEAFIVGRAISGVG 158
                 69******************.9******.**********************************************666666.57777************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 ++++f++ +++i++  p  +r++  gl++a ++l++i+gpl+gg++++ + Wr++fyi+ +++ la+v +++++ +++++++ + + +++         
  CCE31569.1 159 SAGIFAGNIVAIVHTIPLAKRPKIQGLMGAVMGLATIIGPLIGGAFTTRVTWRWCFYINLPFGGLALVAIFFYFKVPNRSPAADLSLKQKilsldipgt 257
                 ******************************************************************999889999999999999999999********* PP

       MFS_1 189 ..............................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls 241
                                                                   +++ vp  ++l ++ v+   +++ + ++ + +++++++p+++q+v+g +
  CCE31569.1 258 illvpaivclllalqwggqvydwnnkyiivlltlmavlfvafiavqICLPKTATVP-PRLLMHRSVVA-GFLTTIAIGSAQYIFVYYIPIWFQTVRGVN 354
                 ********************999999999999999988887777765555555555.34444444333.44444444458888**************** PP

       MFS_1 242 glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt.ssavllllvlvliGfglgfvfpsllalasdlappeeagtasg 339
                  ++ +g+ l  l++ ++++++++g l +r+g  ++l +++++++++ +gl+ + +   s+  ++   +l+Gfg+g++f + + +++ ++p+ e  + ++
  CCE31569.1 355 -AVDSGIQLLPLMISFVVASIVGGLLNQRIGYYTALGIFGSSVMAVGAGLMTTWNLeISQGKVIGYQILFGFGMGLAFQTPNLAVQTVLPRPEVPMGIA 452
                 .8******************************9999999999999999999888885666666668888****************************** PP

       MFS_1 340 lfntagslggalg 352
                 l+ + + l++a++
  CCE31569.1 453 LMFFGQLLSAAIF 465
                 **99999999885 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.29
       MFS_1 307 lvliGfglgfvf 318
                 ++++G+++++v 
  CCE31569.1 525 VFIVGLAMSCVG 536
                 233333333332 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9  16.6   4.8e-10   4.3e-06      41     190 ..      87     230 ..      63     237 .. 0.79
   2 ?   -0.3   0.9     0.041   3.7e+02     319     364 ..     258     301 ..     257     312 .. 0.65
   3 !    2.9  11.0    0.0043        38      46     122 ..     356     433 ..     325     477 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 4.8e-10
                 HHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHH.HHHHHHHHHHHHTTS...-SCC CS
    Sugar_tr  41 keessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigv.GlasvlvPmyisEiA...pkkl 135
                 +++s  ++g+  si+l+ + + +l++g+l  +++ + +ll++ v+f+++++l++aa+   + e++ivgR ++G+g  G++ + +   +  i     +k+
  CCE31569.1  87 DYNSLNDVGWYGSIYLLTCCAFQLLFGKLYAMYSARVVLLVSLVIFLAASALCGAAP---NSEAFIVGRAISGVGSaGIFAGNIVAIVHTIPlakRPKI 182
                 444556799************************************************...99************9615554444444433322257788 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGG CS
    Sugar_tr 136 RgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllf 190
                  g ++ +  la+++G l++  f++        ++wr+ ++++l +  l l++++f
  CCE31569.1 183 QGLMGAVMGLATIIGPLIGGAFTTR-------VTWRWCFYINLPFGGLALVAIFF 230
                 8888888888888888888777543.......46999999999998888887777 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.041
                 HHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHH CS
    Sugar_tr 319 llllGaagmaicfvilgivalllvakskaasivaivfialfialfa 364
                 +ll+ a++++++++  g+ ++ +++k   + ++++ + +lf+a+ a
  CCE31569.1 258 ILLVPAIVCLLLALQWGGQVYDWNNKY--IIVLLTLMAVLFVAFIA 301
                 566667777777777778888888885..44444455555555554 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.0043
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslli.aavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvl 122
                 v+sg+ +  +++  ++ s+++gll +r+G+  +l i ++ ++ +ga l+ + + + s   +i  ++l G+g+Gla  +
  CCE31569.1 356 VDSGIQLLPLMISFVVASIVGGLLNQRIGYYTALGIfGSSVMAVGAGLMTTWNLEISQGKVIGYQILFGFGMGLAFQT 433
                 6777777788999999***************999554999*************99999999999*********98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4084.42
//
Query:       CCE31570.1  [L=514]
Description: related to maackiain detoxification protein 1 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-14   52.1   0.0      2e-13   50.4   0.0    1.8  1  FAD_binding_3   FAD binding domain
    3.9e-07   30.0   0.0     0.0046   16.6   0.0    3.0  3  DAO             FAD dependent oxidoreductase
    3.6e-06   26.0   0.0    0.00033   19.5   0.0    2.2  2  HI0933_like     HI0933-like protein
    0.00026   20.3   0.0      0.083   12.1   0.0    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0044   16.2   0.0      0.007   15.5   0.0    1.3  1  FAD_binding_2   FAD binding domain
     0.0046   17.2   0.0      0.015   15.5   0.0    2.0  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0046   16.3   0.0      0.011   15.0   0.0    1.6  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.029   13.7   0.0    1.7  2  FAD_oxidored    FAD dependent oxidoreductase
      0.038   13.2   0.0        0.1   11.8   0.0    1.6  2  Thi4            Thi4 family
      0.053   14.1   0.4       0.37   11.4   0.0    2.4  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      0.089   11.6   0.0        3.1    6.6   0.0    2.1  2  Trp_halogenase  Tryptophan halogenase
       0.15   11.5   0.0       0.28   10.7   0.0    1.3  1  Glu_dehyd_C     Glucose dehydrogenase C-terminus
       0.18   10.8   0.1       0.34    9.9   0.1    1.4  1  Lycopene_cycl   Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   1.4e-16     2e-13       2     322 ..      36     389 ..      35     396 .. 0.73

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1.4e-16
                    EEEEEE--SHHHHHHHHHHHHTTHH.EEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE......CCCC......C CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvr.vvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne......lsdt......p 84 
                     +Vl+VGaGp+Glm+al+  ++G + v ++e+ ++ v ++   ++ +  ++ +r+   +  + ae  ++++ +++ y +      l+ t      p
     CCE31570.1  36 LNVLVVGAGPSGLMTALECWRKGHNvVKILERSNSPVFTGDVIVIGPSALRAFRH---WPDMCAELEKSKMDSIMYYRKhngeliLGPTslghndP 128
                    58**********************955699*******************999998...56666666677777777777744455422224443223 PP

                    EEEEEHHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEE CS
  FAD_binding_3  85 karadlelesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegee 180
                    +  a  +      ++     +++ r+L+ + ++ g++v+ +++ve   +  + ++a + +  t++ + + a+ +v+aD  r+  r++l i   g +
     CCE31570.1 129 EYTAAWK-GIPFAAP-HQIRKDFYRMLLRQVARVGIRVEYGQRVE---KYFDDEAAMLGGVITDQGTIMFADLVVAADANRT--RSDLLIA--GAH 215
                    3333333.2333333.334578999999999************99...6666667788888888887799********9998..7888766..555 PP

                    EEEEEEEEEEEEEC.-SCCCTTC..........CEEEEECCTTEE........................EEEECCETEEEEEEEEECCE-GGGSCC CS
  FAD_binding_3 181 tvyeagvldvlfda.dlsdivep..........lvlilsaesrgv........................mviPlentlerfyvqvearaekeerse 241
                    t  ++  ++v  +a ++++  ++          +       ++g+                         + P+++      ++   ++++e++++
     CCE31570.1 216 TPSRSSGMSVYRTAfPTERALQDeafrtrwgdaI-------EKGIshhefwmgpgmhlglfispefvafGLTPRDS-----FLHEGGNEPIESWEP 299
                    5555677788877777777777766653333330.......22234777777777788888888666667888888.....778888999****** PP

                    CHHHHHHHHHHHHHHTTSSC....EEEEEEEEEEE...EEEEEESSSE..ETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 242 kfteeevkarlreivgektl....dveieevsawt...vaqrvaekyr..kgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavl 322
                    ++++eev++ l++  +++ +      + ++ s+++   +++++ ++++  +grv  aGDAaH   P+   G  +a++Dav+La+ L +  
     CCE31570.1 300 DVDPEEVTKVLNRVPDWNPVikslVKNTQRGSIVHwplLWRNLRREWTskSGRVVQAGDAAHSSIPASISGGTLALEDAVTLASCLHLSC 389
                    ***********99988776511113344444444422447888888852268*******************************9987655 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.3e-06    0.0046       2      31 ..      38      70 ..      37      74 .. 0.92
   2 ?    0.8   0.0      0.21     3e+02     222     277 ..      75     127 ..      70     148 .. 0.61
   3 !    8.6   0.0   0.00092       1.3     149     302 ..     150     323 ..     146     336 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.3e-06
                EEEECTSHHHHHHHHHHHHTT...EEEEESSSS CS
         DAO  2 vviiGGGiiGlstAyeLarrg...Vtllekgdi 31
                v+++G+G  Gl tA+e  r+g   V +le+++ 
  CCE31570.1 38 VLVVGAGPSGLMTALECWRKGhnvVKILERSNS 70
                9*****************99999******9865 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.21
                 EEEEEEEECCTHSTGSGCSEEEEE....EEETTTTEEEEEETTSEEEEEESSEEETTCSS CS
         DAO 222 gqvlvlkplseklvspaailpvpe....tdddgrgvyvtprkdgrvlvGgtadeesgddd 277
                 g v+v+ p  +       ++p++     ++  +  +y++   +g++++G+t     g +d
  CCE31570.1  75 GDVIVIGPSALRAF---RHWPDMCaeleKSKMDSIMYYRK-HNGELILGPTS---LGHND 127
                 66677755544222...22333335553555555556666.58*******96...33333 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00092
                 HHHHHHHHHHTT-EEEESECEEE.EEEEETCEEEEEEECT.EEE.EEEEEEEE--............GGGHH.HH.HTT.CTTTSEE.EEEEEEEEEEE CS
         DAO 149 taalaraaealGveilegtevtg.leeedgkvwgverttp.gen.daadavVnaa............Gawsd.ll.gll.keldlpi.spvrgqvlvlk 228
                  + l+r++++ G+++ +g +v++ +++e   ++gv   t+ g++ +a d +V+aa            Ga++   + g+   +   p+ ++++ + +++ 
  CCE31570.1 150 YRMLLRQVARVGIRVEYGQRVEKyFDDEAAMLGGV--ITDqGTImFA-D-LVVAAdanrtrsdlliaGAHTPsRSsGMSvYRTAFPTeRALQDEAFRT- 243
                 567999999**************667777888899..6666987443.4.666663555555555556666654445554222344447778888888. PP

                 ECCTHSTGSGCSEEEEE...........EEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGGCGE CS
         DAO 229 plseklvspaailpvpe...........tdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidellealrklfPqlgdv 302
                 ++ ++ ++     ++ +           ++ ++  + +tp +d  +  Gg++ + +++++ +vd+e++ ++l+++ ++ P ++++
  CCE31570.1 244 RWGDAIEKG-ISHHE-FwmgpgmhlglfISPEFVAFGLTP-RDSFLHEGGNE-PIESWEP-DVDPEEVTKVLNRVPDWNPVIKSL 323
                 666644333.22222.246555555553333333333333.44544457776.8888888.***********9999888876554 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.4e-07   0.00033       2      34 ..      37      70 ..      36      72 .. 0.81
   2 ?    4.1   0.0     0.012        16     110     161 ..     148     199 ..     142     207 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.4e-07
                 SEEEE--SHHHHHHHHHHHHTT--E.EEE-SSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrV.lllekakk 34
                 +v+v+G+G++Glm+A+++ ++g++V  +le+ ++
   CCE31570.1 37 NVLVVGAGPSGLMTALECWRKGHNVvKILERSNS 70
                 699***************7777765168888776 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.012
                  HHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE- CS
  HI0933_like 110 divdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlA 161
                  d  ++ll+++ + g+++++ ++v++   +e   +   +++++++  + lv+A
   CCE31570.1 148 DFYRMLLRQVARVGIRVEYGQRVEKYFDDEAAMLGGVITDQGTIMFADLVVA 199
                  5679**********************88877776655568888888889988 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0     6e-05     0.083       2     173 ..      37      67 ..      23     101 .. 0.73
   2 !    5.9   0.0    0.0047       6.4     183     235 ..     147     201 ..     139     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6e-05
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdeekia 99 
                  +v+v+G+Gp Gl +al+  ++g++v+ +                                                                      
   CCE31570.1  37 NVLVVGAGPSGLMTALECWRKGHNVVKI---------------------------------------------------------------------- 64 
                  4566666666666666666666666555...................................................................... PP

                  ESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 100 ydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlvea 173
                                                                                         +e+
   CCE31570.1  65 -----------------------------------------------------------------------LER 67 
                  .......................................................................333 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0047
                  HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.EEE..EEETTSCEEEESEEEE-S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx..xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 183 kelsaaleealekeGvevklgtsvkeidgnge.kle..vvledgeeidadlvvvav 235
                  k++ ++l +++ + G++v  g++v++  +++       v++++g+ + adlvv a 
   CCE31570.1 147 KDFYRMLLRQVARVGIRVEYGQRVEKYFDDEAaM-LggVITDQGTIMFADLVVAAD 201
                  67778899999999***********999888844.459***************986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.1e-06     0.007       2      26 ..      38      62 ..      37      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.1e-06
                   EEEE--SHHHHHHHHHHHHTTT-EE CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkva 26
                   v+V+G+G +GL+ Ale+ ++G++v+
     CCE31570.1 38 VLVVGAGPSGLMTALECWRKGHNVV 62
                   9*********************886 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.1e-05     0.015       1      31 [.      40      71 ..      40      98 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
                   EE--SHHHHHHHHHHHCCTEE.EEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfd.vlllekrdrl 31
                   +vGaG sGl +A ++ ++g++ v +le+++++
     CCE31570.1 40 VVGAGPSGLMTALECWRKGHNvVKILERSNSP 71
                   8*****************996599***99875 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.9e-06     0.011       1      31 [.      39      69 ..      32      77 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.9e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgn 31
                 +++GaGP Gl +a+e+ ++g + + ilE+ n
   CCE31570.1 39 LVVGAGPSGLMTALECWRKGHNVVKILERSN 69
                 4778888888888888888887777777764 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.1e-05     0.029       2      26 ..      38      62 ..      37      70 .. 0.88
   2 ?   -2.6   0.0       1.9   2.7e+03      82     102 ..     480     505 ..     453     509 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvl 26
                  v+VvG+gp+G++ A+ + r+G +v+
    CCE31570.1 38 VLVVGAGPSGLMTALECWRKGHNVV 62
                  9*********************998 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.9
  FAD_oxidored  82 n.....tfepevakavleemlaeagv 102
                   n     tfep + +++ ++m+a+++v
    CCE31570.1 480 NlppghTFEPWTIEQIHKDMMAGKRV 505
                   123344899999****9999988876 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.5e-05       0.1      18      53 ..      36      71 ..      32      80 .. 0.87
   2 ?   -2.7   0.0         2   2.8e+03      58      80 ..     187     209 ..     174     216 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.5e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS- CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvsp 53
                 +v++vGaG+sGL +a    +k    v ilers sp
  CCE31570.1 36 LNVLVVGAGPSGLMTALECWRKGHNVVKILERSNSP 71
                5799****************9977778899999775 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2
                 TTTSTTBSEEEEETTTHHHHHHT CS
        Thi4  58 wlGGqlfsaivvrkpakelLdel 80 
                   G  +f  +vv  +a+   ++l
  CCE31570.1 187 DQGTIMFADLVVAADANRTRSDL 209
                 35778888899888887665555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00027      0.37       1      34 [.      37      71 ..      37      77 .. 0.89
   2 ?   -0.7   0.0       1.5   2.1e+03      42      71 ..     149     178 ..     143     188 .. 0.71
   3 ?   -3.2   0.1       9.7   1.3e+04       7      19 ..     370     382 ..     370     384 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00027
                EEEEECSSHHHHHHHHHHHHTTSEE.EEEESSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkV.tvversdkl 34
                +v+vvG+G +gl+ A +  + g++V +++ers+ +
  CCE31570.1 37 NVLVVGAGPSGLMTALECWRKGHNVvKILERSNSP 71
                599***************99998877999999876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHTTEEEECSEEEEEEEEETT CS
   Pyr_redox  42 askilqeklekngievllntkveeiegsed 71 
                 + ++l +++ + gi+v ++++ve+   +e 
  CCE31570.1 149 FYRMLLRQVARVGIRVEYGQRVEKYFDDEA 178
                 556777788888999999999888665554 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 9.7
                 SSHHHHHHHHHHH CS
   Pyr_redox   7 gGyiglElAgala 19 
                 gG+++lE A +la
  CCE31570.1 370 GGTLALEDAVTLA 382
                 899****999886 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0022       3.1       1      32 [.      37      66 ..      37     101 .. 0.79
   2 ?    3.0   0.0     0.026        36     153     222 ..     146     218 ..     123     249 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0022
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlve 32
                    ++++vG+G++G ++A  + + +++   v+++e
      CCE31570.1 37 NVLVVGAGPSGLMTALECWRKGHN--VVKILE 66
                    599*************99999955..344445 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.026
                     HHHHHHHHHHHHHHCT-EEEE--EEEEEE-T.TS-EEEEEETTS-EEE-SEEE..E-SGGG-.IIIIIIT---E CS
  Trp_halogenase 153 aalyakfLrrvaearGvtrvegkvvevqlde.dgrveslrledgreveadlfi..DcsGfrg.llieqaLktgf 222
                     ++ + ++L r   + G+++  g+ ve   d+      ++ +++g+ + adl++  D+   r+ lli+ a +t+ 
      CCE31570.1 146 RKDFYRMLLRQVARVGIRVEYGQRVEKYFDDeAAMLGGVITDQGTIMFADLVVaaDANRTRSdLLIAGA-HTPS 218
                     66788899999999******99988888888689999***************94444444442455555.5444 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0002      0.28      33      76 ..      37      78 ..      28      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
  Glu_dehyd_C 33 salvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlv 76
                  +lv+GaG+ GL++  +le  ++g + v +l+r + p  t d++
   CCE31570.1 37 NVLVVGAGPSGLMT--ALECWRKGHNVVKILERSNSPVFTGDVI 78
                 589***********..7888899*************99998887 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00025      0.34       2      41 ..      38      76 ..      37      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00025
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvv.lieaspsllfpnn 41
                   v+v+GaGp gl  A +    ++g +vv ++e s+s++f+++
     CCE31570.1 38 VLVVGAGPSGLMTALEC--WRKGHNVVkILERSNSPVFTGD 76
                   89***************..77777765378******99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3663.10
//
Query:       CCE31571.1  [L=317]
Description: uncharacterized protein CPUR_05424 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-16   60.0   0.0    1.8e-15   57.3   0.0    2.2  2  Methyltransf_11  Methyltransferase domain
    6.2e-12   46.1   0.0    1.2e-11   45.1   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    1.5e-10   41.1   0.0    2.3e-10   40.5   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    6.2e-10   39.7   0.0      1e-09   39.0   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    4.9e-08   33.0   0.0    1.1e-07   31.9   0.0    1.6  1  Methyltransf_23  Methyltransferase domain
     0.0014   18.0   0.0     0.0021   17.5   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0026   17.3   0.0     0.0063   16.1   0.0    1.6  2  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.026   14.1   0.0      0.035   13.7   0.0    1.2  1  NodS             Nodulation protein S (NodS)
      0.026   13.6   0.0      0.037   13.1   0.0    1.2  1  DREV             DREV methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   9.2e-19   1.8e-15       2      96 .]      57     149 ..      56     149 .. 0.96
   2 ?   -0.7   0.0       1.1   2.3e+03      69      86 ..     176     193 ..     173     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 9.2e-19
                      EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      dvG+G+G +a++l  ++++v+  D+++e ++la+e+  ++g  ++++v+++e+   ++ +s+D+v++++vlh++ d++ a++ +aR L+pgG++
       CCE31571.1  57 DVGAGNGPYAKELRLKFSHVIVSDIAAENVTLAQERLGNDG--FQYRVSRLEDAdDIPPGSVDMVFATNVLHFC-DQDVAMRALARQLRPGGTF 147
                      9*************999************************..789******9978******************.7****************99 PP

                      EE CS
  Methyltransf_11  95 vi 96 
                      ++
       CCE31571.1 148 AC 149
                      75 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.1
                      S-CCC-CCHHHHHHHHHH CS
  Methyltransf_11  69 evlhhvedpekalkeiaR 86 
                        l +++dpe++l+ + R
       CCE31571.1 176 LLLKTLDDPERLLRAMDR 193
                      578899********9988 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0     6e-15   1.2e-11       1      97 []      55     145 ..      55     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 6e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEE.EESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvef.vqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      v d+G+G+G ++++l  ++  ++v+  Di++e +  a+er+ ++g++ ++ +  da+d+p   gs+D+v+++++lh+++   ++ a++ +ar L
       CCE31571.1  55 VHDVGAGNGPYAKELRLKF--SHVIVSDIAAENVTLAQERLGNDGFQYRVsRLEDADDIP--PGSVDMVFATNVLHFCD---QDVAMRALARQL 141
                      66**************999..9*******************9998666553445666665..889******88899876...4468******** PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      +pgG
       CCE31571.1 142 RPGG 145
                      ***9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   1.2e-13   2.3e-10       6     123 ..      54     163 ..      53     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1.2e-13
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeier 99 
                      +v D+G+G+G +++el  +    ++v+  Di +e ++lA+e++ + g++    + +d+ +++    + ++D++++ +vl +++d+d +++ + r
       CCE31571.1  54 TVHDVGAGNGPYAKELRLK---FSHVIVSDIAAENVTLAQERLGNDGFQYRVSRLEDADDIP----PGSVDMVFATNVL-HFCDQDVAMRALAR 139
                      578**************44...379******************9999985555668888888....69***********.************** PP

  Methyltransf_31 100 vlkpggilliedprllaelpakve 123
                       l+pgg ++++++  ++  ++kv+
       CCE31571.1 140 QLRPGGTFACASFGSAYFADEKVQ 163
                      ***********9985444445555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   5.1e-13     1e-09       2      99 .]      57     147 ..      56     147 .. 0.93

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 5.1e-13
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLkp 95 
                      ++G+G+G ++++l+ k  +++++++Di ++ ++ a+e+l   +     ++++  l+++d+ +++s+D+v+a nvlh + d + +++ +++ L+p
       CCE31571.1  57 DVGAGNGPYAKELRLK--FSHVIVSDIAAENVTLAQERLGNDGF----QYRVSRLEDADDIPPGSVDMVFATNVLHFC-DQDVAMRALARQLRP 143
                      8***************..**************999999999886....8888888888888999*************8.99************* PP

  Methyltransf_12  96 gGrl 99 
                      gG +
       CCE31571.1 144 GGTF 147
                      **75 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   5.5e-11   1.1e-07      24     133 ..      53     165 ..      26     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 5.5e-11
  Methyltransf_23  24 grvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaae....pqgkfdlIvlrevlehvpdppellrqiatllkpgG 113
                      g v d+G+G G  +++lr ++ +v++ D+  e+v +a+++  +   q++ +  ++    p g+ d + +++vl h+ d   ++r +a+ l+pgG
       CCE31571.1  53 GTVHDVGAGNGPYAKELRLKFSHVIVSDIAAENVTLAQERLGNDGFQYRVSRLEDaddiPPGSVDMVFATNVL-HFCDQDVAMRALARQLRPGG 145
                      5788**********************************888888888877655554446778***********.567779************** PP

  Methyltransf_23 114 ylllseplaslkedrllldw 133
                       + +  +++   +d++++++
       CCE31571.1 146 TFACASFGSAYFADEKVQEI 165
                      ******99988899998875 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     1e-06    0.0021      45     155 ..      47     153 ..      35     172 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1e-06
                      S--TT..EEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHH CS
  Ubie_methyltran  45 vkrga..kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfeddsfDvvtvsfGlrnvtDklka 135
                      ++rg+  +v Dv +G g +a +l  +     +v+v Di ++ +  ++++l ++g++ ++  l  +a ++p   +s D+v  +  +  + D++ a
       CCE31571.1  47 EHRGHfgTVHDVGAGNGPYAKELRLKF---SHVIVSDIAAENVTLAQERLGNDGFQyRVSRLE-DADDIP--PGSVDMVFAT-NVLHFCDQDVA 133
                      555555577888889988887775433...4799********************976777775.455544..6999999765.56689****** PP

                      HHHHHHHEEEEEEEEEEEE- CS
  Ubie_methyltran 136 LkeayrvlkpGGrlvvlefs 155
                      ++ + r l+pGG++ +  f 
       CCE31571.1 134 MRALARQLRPGGTFACASFG 153
                      ****************8886 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.2e-06    0.0063      31     102 ..      51     120 ..      43     150 .. 0.88
   2 ?   -2.7   0.0       1.9   3.8e+03      19      30 ..     173     184 ..     172     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.2e-06
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdliv 102
                 + g+v D+G+G+G+ + +l  + ++  v + d+ a+ +++a+e l + +++ +v   +  ++++++++d++ 
  CCE31571.1  51 HFGTVHDVGAGNGPYAKELRLKFSH--VIVSDIAAENVTLAQERLGNDGFQYRVSRLEDADDIPPGSVDMVF 120
                 56789**************999998..899************************99999999999****996 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.9
                 HHHHHHHHCHCC CS
         MTS  19 GsklLletlpke 30 
                 G++lLl+tl++ 
  CCE31571.1 173 GARLLLKTLDDP 184
                 99*******975 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.8e-05     0.035      41     147 ..      49     155 ..      38     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
        NodS  41 qgsiadalevGcaaGalterlapyckrltvvdvveeaiararervkesshiswivsdvqqfs..tdekfdlivvaevlyyiedvaelraavrnlvslla 137
                  g+ + + +vG   G ++++l     ++ v d+  e ++ a+er+ +    ++ vs ++  +       d++  ++vl++ ++ +++ra    l + l+
  CCE31571.1  49 RGHFGTVHDVGAGNGPYAKELRLKFSHVIVSDIAAENVTLAQERLGN-DGFQYRVSRLEDADdiPPGSVDMVFATNVLHFCDQDVAMRA----LARQLR 142
                 56788999**************************************9.788999888887772235789************99998876....566678 PP

        NodS 138 pdgqlv...fGsa 147
                 p+g++    fGsa
  CCE31571.1 143 PGGTFAcasFGSA 155
                 8888753336665 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.9e-05     0.037      97     169 ..      54     133 ..      38     150 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.9e-05
        DREV  97 klldlGaGdGeitkrvaptfeevy....atelsetmrdrlkkkky..nvlsalelqet.dvkldlilclnlldrcfdplk 169
                 ++ d+GaG+G  +k ++  f++v     a+e  +  ++rl   ++  +v    + ++      d++ + n+l  c++ + 
  CCE31571.1  54 TVHDVGAGNGPYAKELRLKFSHVIvsdiAAENVTLAQERLGNDGFqyRVSRLEDADDIpPGSVDMVFATNVLHFCDQDVA 133
                 789*******************86222255555667889988765115544444554313589************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2426.26
//
Query:       CCE31572.1  [L=153]
Description: uncharacterized protein CPUR_05425 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0011   19.6   0.0     0.0018   18.9   0.0    1.4  1  SnoaL_2   SnoaL-like domain
  ------ inclusion threshold ------
      0.011   16.1   0.6      0.015   15.6   0.6    1.3  1  DUF4467   Domain of unknown function with cystatin-like fold 


Domain annotation for each model (and alignments):
>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     2e-07    0.0018       3      65 ..      14      80 ..      12     119 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2e-07
                HHHHHHHTTCHHHHHHTEEEEEEEE.ET...TSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETT CS
     SnoaL_2  3 aflaalnagdldalaalfapdvvwe.dp...ggelrGreairaffralfaafpdlrfeihdvvadgd 65
                +f++a+ + ++d++  l+++ +++   p   g ++r r+ ++  +r l  ++ d++ +++++v d  
  CCE31572.1 14 KFVDAWKRWNADDFIGLWSDSFTFKvLPlsdGKPTRPRDKVAPLYRNLIGTLTDYKLDVKHIVHDAS 80
                79**********************9644444666****************************87754 PP

>> DUF4467  Domain of unknown function with cystatin-like fold (DUF4467)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.6   1.7e-06     0.015      55      91 ..      98     136 ..      67     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-06
     DUF4467  55 n..reevtyvaYeikdkkveykrdindkkylkkhkpDye 91 
                 +  +e++ ++++  +++k+e ++++nd ++ k+ +p y+
  CCE31572.1  98 DykNEQAIFITFSESGDKIESMEEMNDNAFRKEWDPKYH 136
                 244799******************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1256.74
//
Query:       CCE31573.1  [L=119]
Description: uncharacterized protein CPUR_05426 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0055   17.3   0.0     0.0062   17.2   0.0    1.2  1  SnoaL_2   SnoaL-like domain


Domain annotation for each model (and alignments):
>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.5e-07    0.0062       3      66 ..      14      81 ..      12     111 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.5e-07
                HHHHHHHTTCHHHHHHTEEEEEEEE.ET...TSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTE CS
     SnoaL_2  3 aflaalnagdldalaalfapdvvwe.dp...ggelrGreairaffralfaafpdlrfeihdvvadgdr 66
                +f++a+ + ++d++  l+++ ++++  p   g ++r r+ i+ ++r + +++  ++  + ++ ++gd+
  CCE31573.1 14 KFIDAWKRWNADDFIGLWSDSFTFQvLPfsdGKPTRPRDMIAPMYRNFIETLTNYKAIFIAFSESGDK 81
                79**********************9734334555***************9999988888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 917.42
//
Query:       CCE31574.1  [L=454]
Description: uncharacterized protein CPUR_05427 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-86  290.8   0.2    2.2e-86  290.5   0.2    1.0  1  Questin_oxidase  Questin oxidase-like


Domain annotation for each model (and alignments):
>> Questin_oxidase  Questin oxidase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.5   0.2   1.2e-90   2.2e-86       2     340 .]      58     391 ..      57     391 .. 0.93

  Alignments for each domain:
  == domain 1  score: 290.5 bits;  conditional E-value: 1.2e-90
  Questin_oxidase   2 hNHlpHhllAlyalGAsaeqlqaaYeenasyqrpaepsp.....ekiteenwrdhLgdeeyyrayldFFedeleekgwkevleeylfs.negae 89 
                      hNH++H +l+  alG+s+e++q+aY++  + qrp+ p +     +  ++  + + Lg  ++yr++l++F++ +ee+gwk+++ +ylfs ++ +e
       CCE31574.1  58 HNHISHSILTCLALGGSPEDIQRAYDDGLEIQRPMPPLDdalvaRLGDDNVMYESLGSISQYRSFLAYFQHHMEEHGWKATVTKYLFShTKLSE 151
                      9************************************99****978788889999********************************9877799 PP

  Questin_oxidase  90 ellsrlfggllHPlIhlGyglefgqpalvaegLAqaavhydsdpse.llsae.aassraessegsslleilerilkderldaaarpgned.ddk 180
                      ++l+r+++g++HP+IhlG g+ef+qpa+vae+LAqaa h+ds++ + + + e +++ + + +++++ll+i+++ + ++ +++a+++  ed  +k
       CCE31574.1 152 KMLARMYEGAYHPVIHLGLGFEFQQPAIVAEALAQAAAHDDSNLYTyFIACEeESEIAYPLQQAKTLLQIMADASSSKTIRNAPHW--EDyGNK 243
                      *****************************************9999888886644443456778899*******9999*********..7779** PP

  Questin_oxidase 181 irdgvlkraadeileyanawkvseeedkeeleekleeliwaatllyaaaglkkepkkpkyDFflmHlvTsslalrsllallpsklspeskarll 274
                      +rdgvl ra +e  ++a+++ ++++  +e l+++++e+i+++++++a+ +  ++++k k+DFf+mH+vTssl+++++ ++  ++++ ++++r++
       CCE31574.1 244 MRDGVLGRACRETANVASKFVIRKT--PESLRRRTAEMIDTCAYVAASSQ--RSGRKRKIDFFYMHMVTSSLFFSVIGEQ--DWIPLNDRIRMV 331
                      **********************776..689*****************966..7799************************..************ PP

  Questin_oxidase 275 raywrlvllvyvargrpeldldsikeyksaseaelkkgndwktviqrsasaikhdDeHviKlvral 340
                      +++ rl++++yv++g+  ++  ++++y++      ++g +w+++++++  + +hdD+Hv K++ral
       CCE31574.1 332 EWKARLDVAWYVVCGCADIQQLALTAYNDP----VTDGMGWEELYAAV--VKEHDDGHVSKMIRAL 391
                      ********************9999999973....3469********53..468***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3550.86
//
Query:       CCE31575.1  [L=158]
Description: probable scytalone dehydratase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.8e-69  230.2   0.2    1.1e-68  230.1   0.2    1.0  1  Scytalone_dh  Scytalone dehydratase
    2.9e-09   37.1   0.3    3.3e-09   36.9   0.3    1.1  1  SnoaL_4       SnoaL-like domain
  ------ inclusion threshold ------
       0.77    9.6   4.0       0.47   10.2   2.0    1.6  2  LPD23         Large polyvalent protein associated domain 23


Domain annotation for each model (and alignments):
>> Scytalone_dh  Scytalone dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.1   0.2   1.8e-72   1.1e-68       4     154 ..       7     157 ..       4     158 .] 0.98

  Alignments for each domain:
  == domain 1  score: 230.1 bits;  conditional E-value: 1.8e-72
                   HHHHHHHHHHHHHHHHHHHHT-HHHHHTTEEEEEEEEEHHHHSEEEEEEEHHHHHHHHTSTTTTT-TTEEE--EEEEEEEEEEETTEEEEEEEEEEE CS
  Scytalone_dh   4 fedylglkkvlfewadsydskdwdrlrkviaptlridyrslldklweampaeefvamisdkdvlgdptlktqhligesrwekvsdtevigyhqlrva 100
                   +ed  + +++lfewa+syd kdw+rl k+iaptl+idyr +  + weampa+efv+mis+  +lg+p++ktqh++g +rw + s++ v g hq+rva
    CCE31575.1   7 YEDATACQAALFEWAESYDLKDWNRLSKCIAPTLQIDYRAVFGQFWEAMPADEFVGMISSPGFLGNPLIKTQHFVGMTRWTQTSEDSVTGRHQMRVA 103
                   789999******************************************************************************************* PP

                   EEEESSTT--SEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEESHHHHTH CS
  Scytalone_dh 101 hqkytdatlkevklkghahsanlhyyrkvdgvwkfaglkpeirwseydfddvfe 154
                   hqky da +kev lkgh+h   + ++rkvdg wkfag++peirw+e+d+d++f+
    CCE31575.1 104 HQKYADAQMKEVVLKGHGHGGATTWFRKVDGDWKFAGIEPEIRWAEFDLDKIFA 157
                   *****************************************************7 PP

>> SnoaL_4  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.3   5.6e-13   3.3e-09       3     124 ..       7     139 ..       5     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 5.6e-13
                 HHHHHHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTS....--EESHHHHHHHHHS..HHHHHH.....-EEEEE---EEEE.ETTEEEEEEEEE CS
     SnoaL_4   3 ledreaIrdlvarygyylDtkdweeladlFtedavvdytgvg..egvlegrdairaalre..aldgfa.....ltqHllsnpliel.dgdtAtgrayll 91 
                  ed +a++  +  ++  +D kdw+ l ++ ++   +dy++v   + +   +d+++ ++++       +      tqH++++++ +   +d  tgr  + 
  CCE31575.1   7 YEDATACQAALFEWAESYDLKDWNRLSKCIAPTLQIDYRAVFgqFWEAMPADEFVGMISSpgF----LgnpliKTQHFVGMTRWTQtSEDSVTGRHQMR 101
                 6999***********************************875776677789*******99542....333447************95668999999999 PP

                 EEEEETTEE..EEEE..E...EEEEEEEEEETTEEEEE CS
     SnoaL_4  92 atlvrdgdg..grqvlag...gryedelvredggWris 124
                 + ++  +d+  ++ vl g   g  +  ++++dg W+++
  CCE31575.1 102 VAHQKYADAqmKEVVLKGhghGGATTWFRKVDGDWKFA 139
                 99988886644555664456689999**********97 PP

>> LPD23  Large polyvalent protein associated domain 23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.4   8.2e+03       5      20 ..      96     111 ..      93     114 .. 0.58
   2 ?   10.2   2.0   7.9e-05      0.47      35      48 ..     125     138 ..     124     139 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.4
       LPD23   5 gekaltadlealaeAk 20 
                 g++ ++  +++ a+A+
  CCE31575.1  96 GRHQMRVAHQKYADAQ 111
                 5555555666666665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 7.9e-05
       LPD23  35 eTGWfrgkDgkWrF 48 
                 +T Wfr +Dg+W+F
  CCE31575.1 125 ATTWFRKVDGDWKF 138
                 599**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1342.03
//
Query:       CCE31576.1  [L=264]
Description: probable tetrahydroxynaphthalene reductase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-55  185.9   0.8    1.1e-54  185.5   0.8    1.1  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    9.8e-48  162.2   0.8    1.2e-47  162.0   0.8    1.1  1  adh_short     short chain dehydrogenase
    2.8e-10   40.4   0.6    3.9e-10   39.9   0.6    1.1  1  KR            KR domain
  ------ inclusion threshold ------
      0.056   12.8   0.0      0.073   12.4   0.0    1.2  1  DUF1776       Fungal family of unknown function (DUF1776)
      0.058   13.4   0.1      0.093   12.8   0.1    1.2  1  DUF1664       Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.5   0.8   3.1e-58   1.1e-54       3     233 ..      21     263 ..      17     264 .] 0.91

  Alignments for each domain:
  == domain 1  score: 185.5 bits;  conditional E-value: 3.1e-58
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                    +gIG+a+A +l + Ga+vv+ ++n  + +++v +  + lg++ v +++DV++ +q+ +l++++v++fg+lDi++ n g++    g+f ++++eefd
    CCE31576.1  21 GRGIGAAMAVELGRLGAKVVVNYVNSVEsAEKVVDEIKGLGSDaVaIQADVRQVSQIVELMDKAVKHFGGLDIVCSNSGVVSF--GHFGDVTEEEFD 115
                   59************************99977777777778877557*************************************..************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSB.STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT........ CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeggsivnlssvgaerv.vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg........ 184
                   r+++ n+++ f +a++a +++++gg+i+ +ss  a+   vp+++ y+ +K+a+ +++r + ++ g+k+i+vNav+pg + T++  + ++        
    CCE31576.1 116 RVFSLNTRGQFFVAREAYRHLNNGGRIILMSSNTAKDLsVPKHSLYSGSKGAIDSFVRIFSKDAGDKKITVNAVAPGGTVTDMFHSCSQhyipggdk 212
                   ********************************9777554********************************************76665545555666 PP

                   ..HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 185 ..fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                     ++e ++ +++ +pl r+g p ++a++++fLasdea++++G++l  DgG 
    CCE31576.1 213 ytAEERQAMAAHASPLTRNGFPLDIAKVVCFLASDEAEWVNGKVLTLDGGA 263
                   6566678888999*************************************5 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   0.8   3.2e-51   1.2e-47       1     192 [.      13     204 ..      13     207 .. 0.97

  Alignments for each domain:
  == domain 1  score: 162.0 bits;  conditional E-value: 3.2e-51
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 k++lvtG ++GIG a+a el + Gakvvv + +s e +e+v++e+k +g++a+aiq+Dv++ +++ +l++kavk++g+ld++  N G+  +g f +++e
  CCE31576.1  13 KIALVTGSGRGIGAAMAVELGRLGAKVVVnYVNSVESAEKVVDEIKGLGSDAVAIQADVRQVSQIVELMDKAVKHFGGLDIVCSNSGVVSFGHFGDVTE 111
                 79****************************99******************************************************************* PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG.TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvag.kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                 ee++rv+++N  g f ++r++++++   ++GrI+ +sS+++   +v+  + Ys sK+a+++++r ++k+  +++i+vnavaPG++ Tdm ++ ++
  CCE31576.1 112 EEFDRVFSLNTRGQFFVAREAYRHLN--NGGRIILMSSNTAkDLSVPKHSLYSGSKGAIDSFVRIFSKDAGDKKITVNAVAPGGTVTDMFHSCSQ 204
                 ************************76..9**********9956799*******************************************998776 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.6   1.1e-13   3.9e-10       4     164 ..      16     176 ..      14     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.1e-13
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 l+tG   g+G ++a  l + ga+ +v    s    e++++ ++e++ lg +  +++aDv + +++ +l++++ ++++ +  v    gv+  + + ++t+
  CCE31576.1  16 LVTGSGRGIGAAMAVELGRLGAKVVVNYVNS---VESAEKVVDEIKGLGSDAVAIQADVRQVSQIVELMDKAVKHFGGLDIVCSNSGVVSFGHFGDVTE 111
                 9*************************99999...4566679********************************************************** PP

                 HHHHHHHTTTTHHHHHHH.HHTTT.S--SEEEEEEE.HHHHH--TT-HHHHHHHHHHHHHHHHHH CS
          KR 103 edleqvlapKvkGawnLh.elled.esldffvlfSS.iagllgsagqanYaaaNaflDalaeyrr 164
                 e++++v++   +G   +  e+ ++ ++   ++l+SS  a  l  ++++ Y+     +D++++  +
  CCE31576.1 112 EEFDRVFSLNTRGQFFVArEAYRHlNNGGRIILMSSnTAKDLSVPKHSLYSGSKGAIDSFVRIFS 176
                 *************9988625666676666777777725668999***************998654 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     2e-05     0.073     136     195 ..     134     189 ..      69     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2e-05
     DUF1776 136 plltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqi 195
                  +l+    +  +ii+++ +  ++l++p h++ +   +a+++++++++++ ++++i v  +
  CCE31576.1 134 RHLN----NGGRIILMSSNTAKDLSVPKHSLYSGSKGAIDSFVRIFSKDAGDKKITVNAV 189
                 4444....5789***************************************999999765 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.6e-05     0.093      77     119 ..      45      87 ..      30      90 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.6e-05
     DUF1664  77 eqkeiskeikeevtevredlseigedvesvkeavegleskler 119
                 ++ e ++++ +e++ + +d  +i+ dv++v+++ve +++ +++
  CCE31576.1  45 NSVESAEKVVDEIKGLGSDAVAIQADVRQVSQIVELMDKAVKH 87 
                 6678899999****************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1983.98
//
Query:       CCE31577.1  [L=258]
Description: uncharacterized protein CPUR_05430 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-17   62.8   0.0    5.8e-17   62.2   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
    1.4e-05   24.8   0.0    4.4e-05   23.2   0.0    1.7  2  NmrA             NmrA-like family
    0.00015   22.1   0.0    0.00042   20.7   0.0    1.8  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
     0.0022   17.1   0.0     0.0048   15.9   0.0    1.5  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
  ------ inclusion threshold ------
      0.026   14.0   0.0       0.19   11.1   0.0    2.1  2  Epimerase        NAD dependent epimerase/dehydratase family
      0.034   13.3   0.0       0.86    8.7   0.0    2.1  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.042   14.0   0.0      0.093   12.9   0.0    1.6  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
      0.069   12.5   0.0       0.12   11.8   0.0    1.3  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
       0.12   12.2   0.0       0.25   11.2   0.0    1.5  1  SUB1_ProdP9      SUB1 protease Prodomain ProdP9
       0.14   12.1   0.0       0.26   11.2   0.0    1.4  1  KR               KR domain


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   3.3e-20   5.8e-17       1     183 [.       8     212 ..       8     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 3.3e-20
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHC....HHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC......HHHHHHHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpekl....aeleaeeglevvegdvtdvedlaealkgadaVvsalggggk......deegaknivdaa 85 
                     GAtG+ G++l++ ll+r + +++a+ Rn+ kl    +e+e++e++++ +g++ d++ l++ l+g  aV++ l+++ +       +++ k++++++
      CCE31577.1   8 GATGNCGSALIQLLLQRPDASIHAFCRNKPKLigllPEIEKSERVTIYQGSIKDTDLLTACLRGRRAVFMVLSSNINepgfrvGRDANKAVIEVL 102
                     9****************************99966566999********************************98888666666444466666665 PP

                     H...H.....CT.--EEEEEEETTTTSGCGCHHHHHHHHCC....HHHHHHHHHHHHHHHH..SSSEEEEEEE-CEE-ST--SEEEEETTSS--- CS
  NAD_binding_10  86 k...e.....ag.vkRfvlvsaigvgdevpgefgewnkell....kaylaakraaeellra..sgldwTivrpggLtdepttkyrvvekgepfkg 165
                     +   +     +g   +++l+s++  +d   ++++ + +++l    ++++ + ++ e+llra    l+ ++v+pg+L+ +++ +  +       ++
      CCE31577.1 103 RtlhRedsgsTGpPPKIILLSSATLDDTLSRKTPYLLRQILhmsaSHIYNDLAETEKLLRAeqEWLTTVFVKPGALSVDEQRGHALSFV---ESD 194
                     422222222233368************9888877766654322237889**********995557***********8887666555432...235 PP

                     -EEEHHHHHHHHHHHCTX CS
  NAD_binding_10 166 gsisradVAdvlvavldd 183
                     + +s  d+A+++++++dd
      CCE31577.1 195 NPVSYLDLAAAMIEAADD 212
                     67999*********9987 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.4e-08   4.4e-05       2      75 ..       5      82 ..       4     101 .. 0.84
   2 ?   -1.6   0.0      0.89   1.6e+03     182     206 ..     198     223 ..     179     227 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.4e-08
                EESSTTSHHHHHHHHHHHH.HT-EEEEEES-S..-SHHHHHHHHSTTEEE.ES-TT-HHHHHHHHTT-SEEEE---GG CS
        NmrA  2 lviGaTGrqGksvvrallk.aghkvralvRdt..kselakslkeaGvelv.kgdlddkeslvealkgvdvvfsvtgfy 75
                +v+GaTG+ G+++++ ll+  + ++ a  R+      l+ +++++  +++ +g+++d ++l + l+g  +vf+v++++
  CCE31577.1  5 AVLGATGNCGSALIQLLLQrPDASIHAFCRNKpkLIGLLPEIEKSERVTIyQGSIKDTDLLTACLRGRRAVFMVLSSN 82
                79****************989**********96544577888887777777***********************9865 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.89
                 HHHHHHHHHHHHHHH.HHHHTTEEEE CS
        NmrA 182 aeeDiGafvikilkd.prklkgkrik 206
                 +  D +a++i++++d  +k+  k i 
  CCE31577.1 198 SYLDLAAAMIEAADDtTDKYDMKNIG 223
                 55699999999999977777877775 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.4e-07   0.00042       3      58 ..       5      61 ..       3     143 .. 0.71
   2 ?   -1.5   0.0       1.8   3.3e+03      77     110 ..     208     241 ..     177     243 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.4e-07
                    EEETTTSHHHHHHHHHHHCTSSEEEEEEEESTT.TTTSBHHHHSGGGTTTECEBEEE CS
  Semialdhyde_dh  3 aivGatGyvGqellrlLeehpevelvvllsssr.saGkklaeavkaleegkdlkved 58
                    a++GatG+ G++l++lL + p++++++++ ++    G   +  +++  ++ + +++d
      CCE31577.1  5 AVLGATGNCGSALIQLLLQRPDASIHAFCRNKPkLIGLLPEIEKSERVTIYQGSIKD 61
                    89************************9998887333433333333444444444444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
                     HHHHHHHHHHHHTTSEEEESSSTTTTSTTSEBE- CS
  Semialdhyde_dh  77 gvskelapklaeagvkviDlssdfRlkddavyvl 110
                     +++ + ++k+  +++ v+  +++ R+ +  ++++
      CCE31577.1 208 EAADDTTDKYDMKNIGVVNTNGAARFPTGTPLCI 241
                     5556666666777777777777777777666665 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.7e-06    0.0048       1      75 [.       5      80 ..       5      95 .. 0.86
   2 ?   -3.1   0.0       1.7   3.1e+03     247     270 ..     190     212 ..     188     226 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.7e-06
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlD..lrespelleelskvnvkkviegDvtdkdkleealegvdvvihlas 75
                +v+G++G  G+al++ L+++ +   ++++   + +   ll e++k+++ ++ +g ++d+d l++ l+g  +v+ + s
  CCE31577.1  5 AVLGATGNCGSALIQLLLQRPD-ASIHAFCrnKPKLIGLLPEIEKSERVTIYQGSIKDTDLLTACLRGRRAVFMVLS 80
                59******************97.899999522333445678999999999*******************99998755 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
   3Beta_HSD 247 fisddsPvesyddfnltllkelgl 270
                 f+  d+Pv  y d++  ++++ + 
  CCE31577.1 190 FVESDNPVS-YLDLAAAMIEAADD 212
                 778888888.88888888777654 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.19       3      61 ..       6      70 ..       4     112 .. 0.80
   2 ?    0.6   0.0      0.18   3.3e+02     108     128 ..     140     158 ..     117     172 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                EETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHH CS
   Epimerase  3 VtGatGfiGsalvkallekg.yevigldrlssasntarledl......elveldltdrsalerlfk 61
                V+GatG  Gsal++ ll++    ++++ r+ + +  ++l+++      +++++ ++d + l++ ++
  CCE31577.1  6 VLGATGNCGSALIQLLLQRPdASIHAFCRN-KPKLIGLLPEIekservTIYQGSIKDTDLLTACLR 70
                99******************6669999998.33333333333777888888888888888777665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.18
                 TEEEEEEEGGGGTSCSSSSBS CS
   Epimerase 108 krllflsSsevYGkdaeqpke 128
                 +++l++s s++Y + ae+  e
  CCE31577.1 140 RQILHMSASHIYNDLAET--E 158
                 689999******999993..3 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00048      0.86       3      74 ..       6      70 ..       5      80 .. 0.82
   2 ?    2.3   0.0     0.041        73     226     263 ..     190     223 ..     178     228 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00048
                     EETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT CS
  Polysacc_synt_2  3 vtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekale 74
                     v Ga+G  Gs+l++ +l++  ++i  + r+  kl  +  e+e   k+++++++     g+++d++ l+ +l+
       CCE31577.1  6 VLGATGNCGSALIQLLLQRPDASIHAFCRNKPKLIGLLPEIE---KSERVTIY----QGSIKDTDLLTACLR 70
                     77***********************************99984...33344334....799999999998887 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.041
                      EEE--.-EEEHHHHHHHH..........SSSS-EEE-- CS
  Polysacc_synt_2 226 fvldmGepvkivdlakalielsgleekkeedieikitG 263
                      fv    +pv+ +dla a+ie ++ +++k    ++k +G
       CCE31577.1 190 FVESD-NPVSYLDLAAAMIEAADDTTDK---YDMKNIG 223
                      55555.99***********999866654...5666665 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.2e-05     0.093       4      50 ..       5      46 ..       2      65 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.2e-05
                EEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSS CS
      DapB_N  4 avvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellgl 50
                av+Ga+G  G+++++++ +++d+ ++a   +k+     k +g l ++
  CCE31577.1  5 AVLGATGNCGSALIQLLLQRPDASIHAFCRNKP-----KLIGLLPEI 46
                8**************************999988.....445555555 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.7e-05      0.12       2      72 ..       6      70 ..       6      74 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.7e-05
                   EETTTSHHHHHHHHHHHHC.T-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHH CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlek.gyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerlla 72
                   + G +G  Gs l++lLl++ +  +h ++r++ +  +g + +++k      +e++++++g ++D++ l+  l+
     CCE31577.1  6 VLGATGNCGSALIQLLLQRpDASIHAFCRNKPK-LIGLLPEIEK------SERVTIYQGSIKDTDLLTACLR 70
                   679***************945566776666554.5677776654......5689***********9998775 PP

>> SUB1_ProdP9  SUB1 protease Prodomain ProdP9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014      0.25      25      69 ..     187     230 ..     169     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
  SUB1_ProdP9  25 vlsfleskGklanlknlksiiielkedttdeelieyikileekGa 69 
                   lsf+es   ++ l  l + +ie  +dttd+  ++ i +++  Ga
   CCE31577.1 187 ALSFVESDNPVSYLD-LAAAMIEAADDTTDKYDMKNIGVVNTNGA 230
                  69*********9995.778889*********99999999999998 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015      0.26       1      75 [.       2      72 ..       2      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHH CS
          KR  1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleei 75
                ++y + G++G+ G +l++ l+++  +++  + R+   +++   l+ e+e++  +v++++  + d d ++a+l+  
  CCE31577.1  2 ASYAVLGATGNCGSALIQLLLQRPDASIHAFCRN---KPKLIGLLPEIEKS-ERVTIYQGSIKDTDLLTACLRGR 72
                68********************************...45666688888874.58888899998888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1984.33
//
Query:       CCE31578.1  [L=507]
Description: related to phenol 2-monooxygenase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-53  180.3   0.0    7.5e-53  180.0   0.0    1.1  1  FAD_binding_3  FAD binding domain
    5.7e-10   39.3   0.7    3.4e-08   33.5   0.7    2.5  1  DAO            FAD dependent oxidoreductase
    1.1e-07   30.9   0.3    0.00031   19.6   0.1    2.3  2  HI0933_like    HI0933-like protein
    8.5e-05   21.9   0.0      0.043   13.0   0.0    2.4  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00015   21.1   0.1    0.00027   20.3   0.1    1.4  1  Thi4           Thi4 family
    0.00026   21.5   0.3       0.12   13.0   0.2    3.3  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    0.00031   19.9   0.4      0.026   13.6   0.2    2.2  2  Lycopene_cycl  Lycopene cyclase protein
    0.00077   18.8   0.0     0.0059   15.9   0.0    2.0  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.001   19.2   0.1     0.0053   17.0   0.1    2.3  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.003   16.7   0.3     0.0056   15.8   0.3    1.4  1  FAD_binding_2  FAD binding domain
      0.003   17.2   0.1      0.008   15.8   0.1    1.7  1  ApbA           Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.0   0.0   4.6e-56   7.5e-53       2     347 ..       8     353 ..       7     355 .. 0.85

  Alignments for each domain:
  == domain 1  score: 180.0 bits;  conditional E-value: 4.6e-56
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS.....S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE....CCCC..... CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp.....radglnqrtmellrqlGledrilaegapnelmgealyne....lsdt..... 83 
                    +dV++VGaGp+Gl  a +L+ + v+v+++e+ ++  +        ++g+ +  +e +  +Gl + +l + ++  + +++ + +    ++++     
     CCE31578.1   8 ADVIVVGAGPVGLFVACELALHDVSVIVLERDADSDNVWkkgllGGRGMYKPALEAFYRRGLLADLLYDEKRVTYLEKTSGFQyaghFGGRllnan 103
                    79*****************************99876655323335778888899***********9999888777777777776667333355555 PP

                    ..CEEEEEHHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEE CS
  FAD_binding_3  84 ..pkaradlelesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefe 177
                        +r +++l      ++     ++e  L+++a+e+g+++ ++ e+  +e+++++vt  + ++       +++++lv++DGg+St+rk++g++f+
     CCE31578.1 104 avDFSRFKYHLPGPTFLPAKTTIADIECELSKRATECGVRIVRGVEISRVEDEGDEVTVWADNQ------SFKSNWLVACDGGKSTIRKAAGFQFT 193
                    66778888887777778888999999*****************************999877666......699*********************** PP

                    EEEEEEEEEEEEEEEEC-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEEEE CS
  FAD_binding_3 178 geetvyeagvldvlfdadlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldveieevsawtv 273
                    g+++   ++   ++ d+d +++  +     ++ + g+ +++  +    ++ ++++++   +rs+ +t+e++ + l++ +g++     +e vs++t 
     CCE31578.1 194 GTDSE--LTCYIAVCDVDKPELLGK---GMKPTDAGMYIVSGPR----HLYVMDFDT-TFDRSQTVTKEHLERVLQRVSGTSVKIEALELVSTFTD 279
                    ***77..788888888877755555...4566666655555555....556666666.55788999**************999999********** PP

                    EEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHH CS
  FAD_binding_3 274 aqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvd 347
                    + + +++yrkgr++laGD+aHih+P g+qGl t+i Da+nL+wkLa+ +kG A+ +lLdtY++er++ ++ ++d
     CCE31578.1 280 RCKQTTQYRKGRILLAGDSAHIHSPLGAQGLTTGIADAFNLGWKLASTVKGYASADLLDTYQRERQPEGAWTLD 353
                    ******************************************************************98776665 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.7   2.1e-11   3.4e-08       1     298 [.       9     267 ..       9     315 .. 0.69

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.1e-11
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeele 97 
                 dv+++G+G +Gl++A eLa +   V++le++  a         gll +   y+p a  l  +++++      l ++    + y+++ + +l+ +     
  CCE31578.1   9 DVIVVGAGPVGLFVACELALHDvsVIVLERD--AD-SDNVWKKGLLGGRGMYKP-A--LEAFYRRG------LLAD----LLYDEKRVTYLEKT----S 87 
                 8********************999******9..44.344444556655333344.3..33444444......3333....45777778888643....3 PP

                 HHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHH.....HHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEE CS
         DAO  98 aldkllallleagldaelldaeevrelepalpgllgalfypdtgqvdpakltaa.....laraaealGveilegtevtgleeedgkvwgverttp.gen 190
                 ++ +    ++ +g   +ll+a+ + + +    +++  ++ p+  ++ pak t a     l ++a + Gv+i++g e+ ++e+e g+ ++v  + +    
  CCE31578.1  88 GF-Q---YAGHFGG--RLLNAN-AVDFS----RFK--YHLPG-PTFLPAKTTIAdieceLSKRATECGVRIVRGVEISRVEDE-GDEVTVW-ADNqSF- 169
                 55.2...2233555..699997.55555....455..47777.7788888888888888*********************775.4445663.222132. PP

                 EEEEEEEE--GGGHH..HHHTTCTTT.SEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSS.TSCSHHHH CS
         DAO 191 daadavVnaaGawsd..llgllkeld.lpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtadeesgddd.pevdeedi 285
                  + + +V + G  s+  ++     ++   +     ++++++ ++++++    +         + g+y++  +  +++v   +    ++d+ ++v+ e++
  CCE31578.1 170 -KSNWLVACDGGKSTirKA---AGFQfTGTDSELTCYIAVCDVDKPEL----LGKG--MKPTDAGMYIVSGP-RHLYVMDFD---TTFDRsQTVTKEHL 254
                 .3488********974333...33311233556677788877666333....3333..34456789999987.779998776...55555579****** PP

                 HHHHHHHHHHSGG CS
         DAO 286 dellealrklfPq 298
                 +++l++++  + +
  CCE31578.1 255 ERVLQRVSGTSVK 267
                 ****999876655 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   1.9e-07   0.00031       2      45 ..       9      55 ..       8      57 .. 0.81
   2 !    9.0   0.0   0.00031      0.51     110     167 ..     128     183 ..     118     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.9e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS...SSS-HHHHHCGGG CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka...kklgrKilisGgG 45
                 dviv+G+G+ Gl+ A ++a ++ +V++le+    +++ +K l+ G+G
   CCE31578.1  9 DVIVVGAGPVGLFVACELALHDVSVIVLERDadsDNVWKKGLLGGRG 55
                 8****************************861114566666666666 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00031
                  HHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS- CS
  HI0933_like 110 divdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSi 167
                  di   l k+++e gv++    e+++ve e d+ ++v + ++++++++ lv   GG+S 
   CCE31578.1 128 DIECELSKRATECGVRIVRGVEISRVEDEGDE-VTVWA-DNQSFKSNWLVACDGGKST 183
                  55556899******************888888.78877.9****************96 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.6e-05     0.043       2     173 ..       9      38 ..       4      97 .. 0.68
   2 !    6.4   0.0    0.0027       4.5     183     241 ..     127     184 ..     102     198 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdeekia 99 
                  dv+v+G+Gp Gl +a +la + + v+++e                                                                     
   CCE31578.1   9 DVIVVGAGPVGLFVACELALHDVSVIVLE--------------------------------------------------------------------- 37 
                  56666666666666666666666666665..................................................................... PP

                  ESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 100 ydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlvea 173
                                                                                           +
   CCE31578.1  38 -------------------------------------------------------------------------R 38 
                  .........................................................................3 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0027
                  HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-EEES- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 183 kelsaaleealekeGvevklgtsvkeidgngekle.vvledgeeidadlvvvavGvrpst 241
                   +++ +l ++ ++ Gv+++ g ++ +++++g+  e +v  d+++++   +v + G +   
   CCE31578.1 127 ADIECELSKRATECGVRIVRGVEISRVEDEGD--EvTVWADNQSFKSNWLVACDGGKSTI 184
                  67788899999********************9..44688999999*99999999987665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   1.7e-07   0.00027      16      50 ..       6      39 ..       1      64 [. 0.87

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.7e-07
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailers 50
                + +Dv++vGaG+ GL  a  la + d+ v++ler 
  CCE31578.1  6 VYADVIVVGAGPVGLFVACELALH-DVSVIVLERD 39
                568*********************.********97 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   7.1e-05      0.12       2      31 ..      10      39 ..       9      42 .. 0.94
   2 ?    3.8   0.0     0.054        87      41      74 ..     128     161 ..     117     165 .. 0.86
   3 ?   -0.2   0.0      0.93   1.5e+03      26      60 ..     358     390 ..     355     392 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.1e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                v+vvG+G +gl +A++la +  +V v+er 
  CCE31578.1 10 VIVVGAGPVGLFVACELALHDVSVIVLERD 39
                89************************9985 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.054
                 HHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEE CS
   Pyr_redox  41 easkilqeklekngievllntkveeiegsedgve 74 
                 +++ +l ++ ++ g++++ + ++ ++e ++d+v+
  CCE31578.1 128 DIECELSKRATECGVRIVRGVEISRVEDEGDEVT 161
                 6777889999999**************9999843 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.93
                 EEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEECS CS
   Pyr_redox  26 tvversdkllrllDeeaskilqeklekn.gievlln 60 
                 +vv +++ +    ++++s++++e++    g ++  n
  CCE31578.1 358 QVVIMRPDPA---GKAISRLVTEYMATDdGTTFFVN 390
                 5777777777...999*********55448877766 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   1.6e-05     0.026       1      36 [.       9      42 ..       9      58 .. 0.89
   2 ?    4.3   0.0      0.01        17      88     196 ..     128     241 ..     122     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   Dv+v+GaGp gl +A +l  a  +++v+++e  +++
     CCE31578.1  9 DVIVVGAGPVGLFVACEL--ALHDVSVIVLERDADS 42
                   9*****************..9999***999876655 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.01
  Lycopene_cycl  88 rlkeellerlvengvklleakvesveeeeageslvvleggrkirarlvvdarglaslkkarrlglQtfyGv..evevdnppfdldkmvlMDfrveq 181
                    +++ el +r  e gv+ +++   s +e+e  + + v ++++  ++ + v   g ++++  ++ g+Q f G   e+     + d+dk++l+   +++
     CCE31578.1 128 DIECELSKRATECGVRIVRGVEISRVEDEG-DEVTVWADNQSFKSNWLVACDG-GKSTIRKAAGFQ-FTGTdsELTCYIAVCDVDKPELLGKGMKP 220
                    678899999999999999986555555555.6777889999************.999999999999.667612566677899*******9988666 PP

  Lycopene_cycl 182 kl......kgltFlYalPlds 196
                             g++ lY++ +d 
     CCE31578.1 221 TDagmyivSGPRHLYVMDFDT 241
                    555778899999999998876 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.6e-06    0.0059       1      31 [.      11      40 ..      11      47 .. 0.92
   2 ?    0.4   0.0      0.19   3.1e+02     219     270 ..     134     183 ..     122     202 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.6e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgn 31
                 i++GaGP Gl +a+el  +++ ++++lE+++
   CCE31578.1 11 IVVGAGPVGLFVACELALHDV-SVIVLERDA 40
                 89*******************.7*****985 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.19
  Pyr_redox_3 219 eelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpd 270
                   +  +e  ++++   e+ +++++  e++v +++ ++++ ++  v++ G k++
   CCE31578.1 134 SKRATECGVRIVRGVEISRVEDEGDEVTVWADN-QSFK-SNWLVACDGGKST 183
                  444444336666666666666666666666665.3433.3555666666655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   3.2e-06    0.0053       1      29 [.      12      40 ..      12      42 .. 0.94
   2 ?   -2.4   0.0       3.7     6e+03      28      40 ..      92     104 ..      75     122 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.2e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   +vGaG  Gl  A++La ++++v +le+  
     CCE31578.1 12 VVGAGPVGLFVACELALHDVSVIVLERDA 40
                   8*************************975 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.7
                    SSSSSGGG-EECE CS
  NAD_binding_8  28 rdrlGGraasyev 40 
                    + ++GGr+  ++ 
     CCE31578.1  92 AGHFGGRLLNANA 104
                    5678888877655 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   3.4e-06    0.0056       1      32 [.       9      40 ..       9      53 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.4e-06
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeq 32
                   DviV+G+G  GL  A e+a +  +v+v+e   
     CCE31578.1  9 DVIVVGAGPVGLFVACELALHDVSVIVLERDA 40
                   9***************************9876 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   4.9e-06     0.008       1      41 [.      10      50 ..      10      54 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.9e-06
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGl 41
                + ++GaG +G ++a++La +   v+++ r++  +++ k+Gl
  CCE31578.1 10 VIVVGAGPVGLFVACELALHDVSVIVLERDADSDNVWKKGL 50
                579***************************99999877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3588.15
//
Query:       CCE31579.1  [L=467]
Description: o-methyltransferase that catalyse the methylation of nor-rubrofusarin resulting in formation of rubrofusarin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3621.29
//
Query:       CCE31580.1  [L=488]
Description: uncharacterized protein CPUR_05433 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-13   50.8  13.3    8.3e-13   48.4  13.3    2.1  1  AflR      Aflatoxin regulatory protein
      2e-08   34.2  10.1    4.7e-08   33.0  10.1    1.7  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> AflR  Aflatoxin regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4  13.3   9.3e-17   8.3e-13     133     261 ..     226     373 ..      84     398 .. 0.65

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 9.3e-17
        AflR 133 esaasevaaPtsslssrlnasaa.......kssdttsetdthv....kcClsialdvlkrl.......FpnapagCkksaadgessssklpT...iesV 210
                 e+a     aP+ +++s   +++         ss++ s+ d       + Cl+ ald++ ++        p++p   ++s +d  + +++ +T       
  CCE31580.1 226 ENA--AQEAPSVDFHSSCSSRSLssvpesfLSSKIASNSDFGSasssCECLIKALDIMAKVsstdlavTPDTPSTRRNSVQDEAVVAGHDQTsplLHAT 322
                 333..22234444444433332223333343333333333322344499*********97522222226888888888888777766666663335778 PP

        AflR 211 isdNkqaidavsaildCsCsqDeYllslvsLivlKVlgwYaAAArdaasaa 261
                    Nkq+i+a+s++l+ sC +  Yll+ +s+iv+KVl +Y  AA++ +sa+
  CCE31580.1 323 FMANKQTIEALSNMLHGSCQENVYLLTCMSMIVFKVLRRYEMAAGQSISAG 373
                 899********************************************9973 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0  10.1   5.2e-12   4.7e-08       3      34 ..      36      67 ..      34      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 5.2e-12
                -HHHHHCT---STSSSS-HHHHHCTHHHCCCC CS
     Zn_clus  3 CdnCrkkKvKCdakkPaCsnCkklnleCtfys 34
                C  C+  Kv+C+++kP+Cs+C+k++++C+++ 
  CCE31580.1 36 CHACSLSKVRCSKEKPSCSRCAKRGVPCEYIV 67
                *****************************654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3541.79
//
Query:       CCE31581.1  [L=141]
Description: uncharacterized protein CPUR_05434 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-19   69.8   0.9    4.4e-19   69.4   0.9    1.1  1  EthD      EthD domain
    5.2e-07   30.1   0.2      8e-07   29.5   0.2    1.3  1  MmlI      Methylmuconolactone methyl-isomerase


Domain annotation for each model (and alignments):
>> EthD  EthD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.9   4.9e-23   4.4e-19       1      93 [.      26     121 ..      26     122 .. 0.90

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 4.9e-23
                 --S-HHHHHHHHHHTHHHHHCTSTT................--EEEEEEEEEBTTC--SEEEEEEEEESSHHHHHHHHCSHHHHH.HHHHHHHHCGG CS
        EthD   1 pglspeeFrdyweevHaplvkdllg..girryvlr..atktrpateagvalagpgsdadyDgiaelwfdsleaflaafadpeyaavlaaDeenFaDk 93 
                 +g+s+e++r+++ +v ap++kdl+   girr+++   ++ tr+ + + + +++    ad+D++++++fd++e+++++++dp+y+++l+ D+e FaD+
  CCE31581.1  26 EGMSEEAYRNHMVNVSAPMTKDLMVkyGIRRWTQIhnQNATRALMAELF-DPQMCRLADFDCFSQVVFDNIEDYKRMKQDPWYKKHLMHDHEMFADT 121
                 69************************88*****9976666666666666.7777789***************************************7 PP

>> MmlI  Methylmuconolactone methyl-isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.2   8.9e-11     8e-07      10      99 ..      24     119 ..      17     138 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 8.9e-11
        MmlI  10 rredlsheqflahwrevhaplvhavt...Glrryqqnrvvder.......ft.qfvPvveydgypvdgivelWfedlasleksfaspaakllaahGktf 97 
                 r+e++s+e++++h+++v ap++ ++    G+rr+ q +  +         f+ q + +      ++d  +++ f+++++++++   p +k+   h + +
  CCE31581.1  24 RKEGMSEEAYRNHMVNVSAPMTKDLMvkyGIRRWTQIHNQNATralmaelFDpQMCRL-----ADFDCFSQVVFDNIEDYKRMKQDPWYKKHLMHDHEM 117
                 99*********************985455*****885444333455544433244444.....45899*********************9988876655 PP

        MmlI  98 ia 99 
                  a
  CCE31581.1 118 FA 119
                 55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1131.30
//
Query:       CCE31582.1  [L=174]
Description: uncharacterized protein CPUR_05435 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-31  107.9   6.4    6.3e-31  107.5   6.4    1.1  1  DUF1772   Domain of unknown function (DUF1772)
  ------ inclusion threshold ------
       0.13   11.8   0.7        0.3   10.6   0.7    1.5  1  NapE      Periplasmic nitrate reductase protein NapE
       0.73   10.1   7.8       0.52   10.6   1.3    2.3  2  DUF2189   Predicted integral membrane protein (DUF2189)


Domain annotation for each model (and alignments):
>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   6.4   1.1e-34   6.3e-31       1     135 [.      23     159 ..      23     161 .. 0.87

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 1.1e-34
     DUF1772   1 GlilafslfvvPallslpassslllkqwrrlfkrgkavfpplallsalafaylaaraasrgarllylaaaallllsivpyTllvmvPtNnkLaal..k. 96 
                 G+++++s++++P+ll+++++++ l +qw+rl+++g++++p++++++a+++++++ + +++ +     +aa++l+l+i+pyT+l+m+PtNn+L+a+  + 
  CCE31582.1  23 GAMFSVSAIMIPTLLDTNKEPAGLTTQWARLYHYGSVLMPSMSVAIAAVYGFASTQYRQSPQGMRC-LAAGALTLAIAPYTWLAMIPTNNALFAMaaSa 120
                 99******************999***************************9555444444444444.678899999*******************8844 PP

     DUF1772  97 eedakekedeaevrellerWgrlnlvRavlalaaavlgl 135
                 +  a +++  +++r+l+++W  l+ +R++l+la+a++g+
  CCE31582.1 121 PGFAGMQDANEKARDLVMKWVVLHSIRSILPLAGAIMGF 159
                 6666677778999***********************997 PP

>> NapE  Periplasmic nitrate reductase protein NapE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.7     5e-05       0.3      25      41 ..      59      75 ..      56      76 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5e-05
        NapE 25 vlfPiLsValVggYGfi 41
                vl+P +sVa+ + YGf+
  CCE31582.1 59 VLMPSMSVAIAAVYGFA 75
                8***************6 PP

>> DUF2189  Predicted integral membrane protein (DUF2189)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.3   8.7e-05      0.52      98     126 .]      10      38 ..       3      38 .. 0.91
   2 ?    3.5   0.6     0.014        82      46      83 ..      87     124 ..      48     159 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.7e-05
     DUF2189  98 flivgllvGavlAalvFaisvvslPlllD 126
                 + +v l+ G++l+ ++F++s++ +P llD
  CCE31582.1  10 VHVVALASGVFLSGAMFSVSAIMIPTLLD 38 
                 578999**********************9 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.014
     DUF2189  46 ssllllglllallfllWvraaallfallfgtaplesls 83 
                 + l++ +l+la++   W+ +  +  al++ +a+ + ++
  CCE31582.1  87 RCLAAGALTLAIAPYTWLAMIPTNNALFAMAASAPGFA 124
                 34777888999999999999988888887544443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1391.37
//
Query:       CCE31583.1  [L=310]
Description: uncharacterized protein CPUR_05436 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-14   53.4   5.4    3.3e-13   50.1   5.3    2.0  1  Lactamase_B    Metallo-beta-lactamase superfamily
    0.00021   20.9   0.5    0.00047   19.7   0.5    1.6  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   5.3   3.7e-17   3.3e-13       5     157 ..      59     187 ..      56     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 3.7e-17
                  SSEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHC CS
  Lactamase_B   5 pvnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvs 102
                  ++n+y++ ++++ +++Dt +++ ++ ++l    l      +++v+lTH+H DH+Gg+++l + ++   + +++++++ ++ +                
   CCE31583.1  59 GTNTYIVGTGKHRLIVDTSGGEIEWAELL-ESTLSSLNISLSHVLLTHWHGDHTGGVPDLLRIYP---HLEHDIYKNEPESGQ--------------- 137
                  69*************************98.9999999999********************98654...344444444444444............... PP

                  GCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHC CS
  Lactamase_B 103 adkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallaget 157
                        d+ ++++++ ++ ++ + + pgh+ +h+++ +++++  ftGD +l + t
   CCE31583.1 138 -----QDIVDGQIFRVEGATVRALHVPGHSDDHMCFILEEEQAMFTGDNILGHGT 187
                  .....799****************************************8887665 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.5   5.3e-08   0.00047       1      56 [.      70     123 ..      70     181 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.3e-08
                    SEEEES--TT...HHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--E CS
  Lactamase_B_2   1 rriLiDagpd...lrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpk 56 
                    +r+++D++ +   +++ ++++l   + ++   ++  Vllth H DH+ g+++l +++p+
     CCE31583.1  70 HRLIVDTSGGeieWAELLESTL---SSLN--ISLSHVLLTHWHGDHTGGVPDLLRIYPH 123
                    6778888877665433333333...2222..37999******************96553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2432.06
//
Query:       CCE31584.1  [L=1808]
Description: polyketide synthase that catalyse the condensation of one acetyl-CoA and six malonyl-CoA resulting in formation of nor-rubrofusarin [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-73  245.5   0.0    5.8e-72  242.3   0.0    2.2  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
      1e-44  153.3   0.3    1.6e-44  152.7   0.3    1.3  1  Acyl_transf_1    Acyl transferase domain
    1.9e-41  142.4   2.1    7.9e-40  137.1   0.0    3.1  2  SAT              Starter unit:ACP transacylase in aflatoxin b
    3.5e-33  114.1   0.2    9.4e-33  112.7   0.2    1.8  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    3.6e-09   36.3   0.0      7e-09   35.3   0.0    1.5  1  PS-DH            Polyketide synthase dehydratase
      2e-08   34.5   0.2    5.5e-08   33.1   0.2    1.7  1  PP-binding       Phosphopantetheine attachment site
    2.3e-08   34.5   0.2    1.1e-07   32.3   0.0    2.3  2  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
     0.0003   20.2   0.1    0.00066   19.1   0.1    1.4  1  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
      0.049   14.2   0.0       0.19   12.3   0.0    2.0  1  Abhydrolase_6    Alpha/beta hydrolase family
        2.5    8.8   6.1    1.5e+02    3.1   8.3    2.2  2  PRCC             Mitotic checkpoint regulator, MAD2B-interact


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.3   0.0   3.2e-75   5.8e-72       4     253 .]     409     658 ..     407     658 .. 0.94
   2 ?    0.1   0.0      0.28   4.9e+02      69     126 ..     982    1035 ..     968    1079 .. 0.73

  Alignments for each domain:
  == domain 1  score: 242.3 bits;  conditional E-value: 3.2e-75
                    EEEEEEEEEBTTBSS.HHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHHHHH CS
  ketoacyl-synt   4 vaivGmgarfPggnd.veefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllleaaw 97 
                     aivGm++r+Pgg + +e+fw+ L++g d  +++padr+d +++ydp+ +  +k+ t++g+f+d    fd+ ff++sprea+ +dpq rl+l++a+
     CCE31584.1 409 LAIVGMACRLPGGATdTEKFWDILVKGLDVSRKVPADRFDIETHYDPTGKQMNKSMTQYGCFIDePGLFDAPFFNMSPREAQTTDPQMRLALVTAY 504
                    79**********9999******************************************************************************** PP

                    HHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt  98 ealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslr 190
                    eale+ag+  +++++++   +g + G +a dy++    + +g+ev+++  + g   +++ +gri+y++++ Gps+++dtACsS+l+a+++a+q l+
     CCE31584.1 505 EALEQAGYVGNRTNSTKlerIGTYYGQAADDYRE---VN-QGQEVSTYY-IPGG-CRAFGPGRINYFFKFAGPSYSIDTACSSGLAAIEVACQGLW 594
                    ********999997777788**********9965...33.444577777.6666.8**************************************** PP

                    TTS-SEEEEEEEE---SHHHHHHHHHTTBB-TT.SGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 191 sgeadvalaGGvellltpeavagfsaagllspd.grckafdpkadGfvlGEGvGavvLkrleda 253
                    +g +d+a+aGGv++l++p ++ag+ + ++l++  + ck+ d  adG+++++G+G +v+krleda
     CCE31584.1 595 NGVIDTAVAGGVNVLTNPDGFAGLCNGHFLTKGhNACKTWDSTADGYCRADGIGSLVIKRLEDA 658
                    ****************************88888799**************************98 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.28
                     EGGTTSTHHHHHHHCTS-HHHHHHHHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHH CS
  ketoacyl-synt   69 dfdpeffgispreaeamdpqqrllleaawealedagltpeeldgsrvgvfiGvgagdy 126 
                     +f p+++g +p++ +   ++++l+l++++ a++++ ++     g +  v+iG + g+y
     CCE31584.1  982 SFIPAIDGSHPQDHQHSAVVTQLALVCSEMAMAQYWFSL----GIKPDVVIGHSLGEY 1035
                     68899999999*999*****************9875544....222234444444444 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   0.3   9.1e-48   1.6e-44       2     318 ..     941    1265 ..     940    1266 .. 0.89

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 9.1e-48
                     EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT-.-.HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTH CS
  Acyl_transf_1    2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygf.s.vldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlG 93  
                     f f+GqG+  + M ++L+++ + f++ i+r+d   +  +gf s +  +  + p+    + +++q+aL+  ++a a+ + s G +p++v+GHSlG
     CCE31584.1  941 FTFTGQGASHKSMNLALYHDVPSFRDYIQRLDAIAQ-GQGFpSfIPAIDGSHPQDHQHSAVVTQLALVCSEMAMAQYWFSLGIKPDVVIGHSLG 1033
                     89*****************************97555.599955244555588999999************************************ PP

                     HHHHHHHCCSSSHHHHHHHHHHHHHHHHHHT..S-EECCEECS.HHHHHHH.......TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.C CS
  Acyl_transf_1   94 ElAaavvagalsseeallavvlrsrlmmqla..gpgdmaavelaeeeeklr.....cqddvvgavansprrvvisgsqealrelvervskegvg 180 
                     E+Aa +vag +s+ + +  v +r +l ++    g   m av  + ee k+       + + + a+ n+p  +v+sg+++a++++ + ++++g++
     CCE31584.1 1034 EYAAMHVAGVISASDTIFMVGRRAQLLQEKCklGSHSMVAVRASLEEIKQNtsstdSDAEFTIACINGPTDTVLSGTKNAIDAVSKTLEQAGFR 1127
                     *************************999876477888888888555544432211245579********************************* PP

                     CEEECCCEECTTCCCCCCCCHHHHHHHH.CCCHHCHHTTBEHCCCHHH.HHHCHHHHHHHHHHHCHCCHCCHHTTS..SSE..CC-CCEECSSS CS
  Acyl_transf_1  181 alvenvnvavhspqvdaiadalasalad.iaprkpkvakisstsldes.serelsaeywvanlrspvrfaeavlsa..aet..iplvfveispH 268 
                       + +v +a+hs q d+i d+    ++  +  ++pk++ is +  +   + ++l a+y ++  r++v f  a+ +a  + t  +  v +e+ pH
     CCE31584.1 1128 CTKLDVAFAFHSDQTDPILDEFEDIVKAsVSFQEPKMPVISPLLGKVVfDGKTLNANYVRRATRETVDFISALHNAqkMSTisEDTVWIEVGPH 1221
                     ***********************9999878889********99999989***********************999988555116789******* PP

                     SCCHCCCCCCCHHGGG-TCCCCCCTEETTSS-HHHCHHHHHHHHHHCT-H CS
  Acyl_transf_1  269 slllaalektlksaedvksatlvGklkrdltdflvtflyllakahltgse 318 
                     ++ ++ ++k l      ++   +++++rd ++  +t+  +la +h +g+e
     CCE31584.1 1222 AVCTNMIKKILP-----ATKLALPSMRRDADN-WKTVSDSLAALHSSGVE 1265
                     ***********9.....788899********9.99999999999999986 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.0   4.4e-43   7.9e-40       3     236 ..      24     267 ..      22     270 .. 0.89
   2 ?    3.1   0.5     0.037        67     106     215 ..    1026    1114 ..     964    1138 .. 0.52

  Alignments for each domain:
  == domain 1  score: 137.1 bits;  conditional E-value: 4.4e-43
         SAT   3 FGDq..tadvlpeLrkLl...qakenplLrsFLekasealraeisrlpaaerkslprftslqeller...ysesglkspalssallciaqlaqfivyle 93 
                 FG    ++d + ++r+L+   + k++plL++F+++a+ +l++eis l++   + +p f+++ +  e    + ++gl + a++ +ll+++qla++i+y+e
  CCE31584.1  24 FGNElpNDDLQTHFRRLHtrsKDKNHPLLARFIDEATLVLKEEISALSTDLGRLIPTFETVLQWSEDanaSLREGLLCGAIDGVLLVVLQLASYICYHE 122
                 66666567799999999986667899******************************9988888877755567899999*******************84 PP

         SAT  94 enpeeypspe..stylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevarvaarle.egsssssesWslavtglseeelekalaefneekg 189
                     +y ++e  +  l+Gl +Gll+++av+ +++ s L  ++ ++vr+afrlG++v  v++ le +  s +++sW+++v  ++ +++++ l+ +  + +
  CCE31584.1 123 I--LTYDKEEcvHIALTGLGIGLLSSTAVSLAPTPSHLPLAGADVVRLAFRLGIHVLGVSELLEaRDVSGKPASWAYLVQIADSDAAQAELDLLYGNAE 219
                 3..34444445699**************************************************98889999****************99998876666 PP

         SAT 190 lp.pasrvyisavssssvtisGpPstleallksskakkkkkksklpiy 236
                  + +++++ isavs++s++ sGpPs l+ l+++s++ ++++ + lp+ 
  CCE31584.1 220 SSaNSNKIIISAVSQTSIVASGPPSRLKLLFNKSPLFRNARSTALPVF 267
                 55256***********************************99999986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.037
         SAT  106 ylvGlCtGllaAaavacskslseLvplaveavrvafrlGlevarvaarleegsssssesWslavtglseeelekalaefneekglppasrvyisavs 202 
                  +++G++ G  aA  va   s s+                  v r+a+ l+e+  +  ++ ++av+ +s ee+++  +++ ++      +   i++++
  CCE31584.1 1026 VVIGHSLGEYAAMHVAGVISASDT--------------IFMVGRRAQLLQEK-CKLGSHSMVAVR-ASLEEIKQNTSSTDSD------AEFTIACIN 1100
                  555555555555555444443332..............22233333333311.111111233332.2333333332222222......335566666 PP

         SAT  203 sss.vtisGpPstl 215 
                  +++ +++sG  +++
  CCE31584.1 1101 GPTdTVLSGTKNAI 1114
                  65556666655555 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.2   5.3e-36   9.4e-33       2     117 ..     667     786 ..     666     787 .. 0.97

  Alignments for each domain:
  == domain 1  score: 112.7 bits;  conditional E-value: 5.3e-36
                      EEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG....SCTSEEE-THHHH-B-G CS
  Ketoacyl-synt_C   2 avikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar....kqplavgSvKsniGHle 91 
                      ++i g+++n+++++ s+t+p++ +qa + +++l++agvdp dv+yve hgtgt++gD  E++++ +v++  ++    ++pl +g+vK+n+GH+e
       CCE31584.1 667 GIILGAGTNHSAEAVSITHPHAGHQAYLSRQVLRQAGVDPLDVSYVELHGTGTQAGDYEEMQGILDVYAPLTKrrsaDNPLHIGAVKANLGHGE 760
                      789*******99*********************************************************9998899999*************** PP

                      GGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  92 aAaGvaelikvvlalkhgvipptlnl 117
                      + aG+++l+kv+l++++++ipp++++
       CCE31584.1 761 SVAGTTALMKVLLMFREQAIPPHIGI 786
                      **********************9976 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   3.9e-12     7e-09      33     294 ..    1375    1650 ..    1373    1654 .. 0.72

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 3.9e-12
                  EEETTEEB--TTHHHHHHHHHHHHTS---.......-EEEEEEEE----.B--SS..-EEEEEEEEE-TTS-E....EEEEEEE-SS-TT.EEEEEE CS
       PS-DH   33 HrvdgkvvlPgagylemaleAarqltges......kavelrdvsilkalvlpede..pvevqlslepeedgadrawvefeifSregggeewtehatG 121 
                  Hr+++ +v+    +  +a+  a+   ++           ++d+++ k lv + d+  p  ++++++  +    ++ ++ +   ++++g+  +  at+
  CCE31584.1 1375 HRMNDCAVVTSSIHADIAFTLAEYMLPKLlpaskkLKAIIQDLVVTKGLVANHDRnsPQLFRVTATTTDIL--HHGLDLTWQNVDNDGTVHEPFATA 1469
                  55555555555555555555555555444444433345566777777777776664444444444444322..334444444444444435666777 PP

                  EEEE-----.............--B--HHHHHHHS-SEE....E-HHHHHHHHHHHSEEE-GGG--EEEEEEETTEEEEEE---GGGSSTTTT-SB- CS
       PS-DH  122 tvrlaegaa.............aaavdlealqarcaepaslrsvssaefYerlaargleyGpsFqglralwrgdgealaelrlpeelaggesayvlh 205 
                  +++++  ++             ++ ++leal     ++ +++++s a  Y  +a+  ++y ++++g++++     e +a +rl+++ +g+   + + 
  CCE31584.1 1470 KITFGDPEQwlsswspmvhlvqSRVEALEALV----ADGTANRFSRAMAYGLFAKNLVDYSEKYRGMQSVIMHGLEGFANVRLTDKESGN---WTVP 1559
                  77777666677777666664433334455552....333346689999************************************998854...9*** PP

                  HHHHHHHHHHG..GG..----------EEEEEEEEEEE-S...-BTS--EEEEEE..----SS-EEEEEEEE-SS-BEEEEEESEEEEE--XX CS
       PS-DH  206 PallDaalQllaaal..saeaekadaaylPvaierlrvyrpssaageelwvharl..eeegarsivadltlvdedGrvvaeieglrlrrvere 294 
                  P  +D++ +l +  +  s++ +  d  ++  +++ +++  ++ ++g + ++++++  ++++  ++ +d+ ++ +dG ++ ++ g+++rr++r 
  CCE31584.1 1560 PHFIDSVAHLAGFIMncSDAINTVDNYCVTPGWKAMQFA-KPLTPGARYQSYVKMipQADNSGTYLGDVYIM-QDGDIIGKVWGIEFRRYPRL 1650
                  *********77677778889999****************.6999************9889999*******99.7***************9985 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.2     3e-11   5.5e-08       5      64 ..    1741    1800 ..    1738    1803 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 3e-11
  PP-binding    5 elvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaela 64  
                  +l+a    ++l+++++d+ + +lG+DSl+++ ++ +++ e++v++  s ++++pt+++l 
  CCE31584.1 1741 RLIANEAALDLSQLEDDAGFAELGIDSLMSLVIAEKFKIELDVKVGGSLFLDYPTIGDLR 1800
                  577888888999999*******************************************95 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.0        10   1.8e+04      65      95 ..     348     378 ..     347     381 .. 0.78
   2 !   32.3   0.0   6.2e-11   1.1e-07       2     108 ..     791     903 ..     791     906 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 10
  KAsynt_C_assoc  65 vlsgrteeaveallekleehlldaellslln 95 
                     ++sg +++av+++ ++++ h l+ +l s+l+
      CCE31584.1 348 NYSGASAAAVDHFGNSASLHDLEVALKSVLH 378
                     6799999999999999988887777666665 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 6.2e-11
  KAsynt_C_assoc   2 npeipa.leegrlkVvteptpwpggi.....vgvNsfGfGGsnvHviLksnkkekrkeeskeeslprLlvlsgrteeaveallekleehlldael 90 
                     np+ip  l++ +l+++ +  +w+++      + vN fG  G n+ ++L++++ +  +e ++  ++ +++ +s++t++++  ++e+l ++l+++++
      CCE31584.1 791 NPKIPKdLAKRNLHIPMNLESWRRRSdkkrlAVVNNFGAAGGNTTMVLEEAPIRCIEEMDP--RQTHVISVSAKTKNSLVGNIERLIAYLDSNPD 883
                     67776338899999999999999888889999********************999999999..99***************************999 PP

  KAsynt_C_assoc  91 lsllneilseeisr..lpyR 108
                      sl++  +++  +r  + +R
      CCE31584.1 884 TSLADLSYTTMARRyqHSWR 903
                     99988888777777557777 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   3.7e-07   0.00066      78     117 ..     572     611 ..     569     619 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.7e-07
                 EEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N  78 avtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117
                 +  ++ +csSgl+a+  a+q +  g +d +vagGv  ++n
  CCE31584.1 572 SYSIDTACSSGLAAIEVACQGLWNGVIDTAVAGGVNVLTN 611
                 6789*******************************99987 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0001      0.19      30      85 ..     939    1040 ..     919    1097 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
                     EEE--TTST.........................................S-GGCS--HHHCHHHHHHHCCTT..........TTSEEEEEETC CS
  Abhydrolase_6   30 lapDlpGhG.........................................rsdpppldledladlaalldelaa........gggpvvlvGHSl 74  
                     +a+ + G+G                                         +s+p ++ ++++++++al+ ++ a        g +p v++GHSl
     CCE31584.1  939 VAFTFTGQGashksmnlalyhdvpsfrdyiqrldaiaqgqgfpsfipaidGSHPQDHQHSAVVTQLALVCSEMAmaqywfslGIKPDVVIGHSL 1032
                     566666666555555555555555555555555555555556666666666688889998888889999999889******888888******* PP

                     H..HHHHHHHHHC CS
  Abhydrolase_6   75 G..Galalaaapl 85  
                     G  +  a++   +
     CCE31584.1 1033 GeyA--AMH---V 1040
                     *442..344...2 PP

>> PRCC  Mitotic checkpoint regulator, MAD2B-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.41   7.3e+02     183     213 ..    1486    1516 ..    1484    1516 .. 0.93
   2 ?    3.1   8.3     0.082   1.5e+02       2      73 ..    1655    1731 ..    1654    1755 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.41
        PRCC  183 LahqAkeneeeLeeswAenrrnRkqaqaKYG 213 
                  ++h ++++ e+Le   A++ +nR   ++ YG
  CCE31584.1 1486 MVHLVQSRVEALEALVADGTANRFSRAMAYG 1516
                  699********************99999998 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.082
        PRCC    2 fFSl...esasassssaaaksaptisyeplvssapeaeeseeed.ppetepepasqpeaenadleakkaakssea.m 73  
                  fFS    +s++++++++ ++++++ + e  +s+a++ ++++++  ppe++p+p+ qp ++n++ +a+ a+ s++a  
  CCE31584.1 1655 FFSApgkSSTTTTTKASVSAPVKSKPVETKLSAASKPPTVAQTGiPPEQKPAPEVQPVTTNSPATAAAAPASTQAaD 1731
                  9***9887777777777777788888888888888777777765256667777777777777777776666554432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.98u 0.25s 00:00:01.23 Elapsed: 00:00:00.42
# Mc/sec: 12990.60
//
Query:       CCE31585.1  [L=302]
Description: uncharacterized protein CPUR_05438 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.7   0.1      0.054   13.7   0.1    1.5  1  PAC4      Proteasome assembly chaperone 4


Domain annotation for each model (and alignments):
>> PAC4  Proteasome assembly chaperone 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     3e-06     0.054      29      70 ..      27      68 ..       6      71 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-06
        PAC4 29 gslvvAmpsrtnkktptisTtLlgdg.sdeaserlAqrLArRl 70
                +++  +mp+++  ++p i TtL ++   +e +e++Aq  ArRl
  CCE31585.1 27 SQVGDSMPNPPT-TSPSILTTLQRQLkISELEEQIAQSVARRL 68
                555669*****9.55889********9999************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2429.85
//
Query:       CCE31586.1  [L=397]
Description: uncharacterized protein CPUR_05439 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   14.2   0.5        0.6    9.6   0.0    2.7  3  AbiJ_NTD3  AbiJ N-terminal domain 3
      0.051   14.2   0.4        1.3    9.7   0.2    2.8  2  WGG        Pre-rRNA-processing protein TSR2
      0.099   12.5   0.6        4.1    7.4   0.1    2.7  2  DUF5363    Family of unknown function (DUF5363)
       0.14   10.6   0.2        4.5    5.6   0.1    2.1  2  Tic110     Chloroplast envelope transporter


Domain annotation for each model (and alignments):
>> AbiJ_NTD3  AbiJ N-terminal domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.055   2.5e+02       5      42 ..      20      56 ..      17      77 .. 0.73
   2 ?   -1.0   0.1      0.25   1.1e+03       2      36 ..     126     157 ..     125     175 .. 0.66
   3 ?    9.6   0.0   0.00013       0.6       4      64 ..     272     329 ..     267     336 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.055
   AbiJ_NTD3  5 rtRreiadaldleeeslfgeldeveflsrlw.dldalp.s 42
                + R++i+d++d+    + ++ +++++l+rl+  l+  p  
  CCE31586.1 20 LLRQAIVDEFDA---IYGEDEKQLAVLRRLCqRLEIFPlP 56
                6799******86...4555777899999999666666644 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.25
   AbiJ_NTD3   2 isertRreiadaldleeeslfgeldeveflsrlwd 36 
                 + ++ R++++d++++ +++     +++++l+rl++
  CCE31586.1 126 VRKLLRQALVDEFEAIDDKN---ENDLAVLQRLCQ 157
                 56889999999999754443...344577888773 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00013
   AbiJ_NTD3   4 ertRreiadaldleeeslfg.eldeveflsrlwdldalpstdsrfsnarddiaqHvvrndDw 64 
                 ++ R++++d++ +    ++g + +++++l+rl++  +++   + +++ r+ i+ H+v+  D+
  CCE31586.1 272 KLFRQALVDEFGA----IYGvDDNKLDVLQRLCEKLEINPLPQTLTDCREAIQAHYVNIVDF 329
                 5678888888875....455478889*******88888899*****************8665 PP

>> WGG  Pre-rRNA-processing protein TSR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2    0.0003       1.3      35      75 ..      21     146 ..       6     151 .. 0.67
   2 ?   -0.9   0.0       0.6   2.7e+03      24      52 ..     263     291 ..     258     307 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0003
         WGG  35 lagaivdlfk......................................................................................ake 47 
                 l +aivd f                                                                                       +k 
  CCE31586.1  21 LRQAIVDEFDaiygedekqlavlrrlcqrleifplpnsvryrddmkalamrriasdaiarkagpielffnrynrfgydphskvwseyhrlceffgwDKG 119
                 444666666555555556666666666666666666666666666666666666666767777777777777777777777777777777777778888 PP

         WGG  48 eldqedvedvLlqvmedeFevnveDdSa 75 
                  +++e+v ++L q++ deFe  ++D+ +
  CCE31586.1 120 STKEEKVRKLLRQALVDEFEA-IDDKNE 146
                 89*****************96.466655 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.6
         WGG  24 ggpdsadkrdwlagaivdlfkakeeldqe 52 
                 g p ++  r+ + +a+vd f a + +d +
  CCE31586.1 263 GSPTEKTARKLFRQALVDEFGAIYGVDDN 291
                 56667778888889999998654444444 PP

>> DUF5363  Family of unknown function (DUF5363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1   0.00091       4.1      11      29 ..     102     120 ..     101     123 .. 0.92
   2 ?    2.5   0.0     0.031   1.4e+02      11      28 ..     246     263 ..     245     265 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00091
     DUF5363  11 rllekYneFckelGvdkga 29 
                 +++  Y ++c+ +G dkg+
  CCE31586.1 102 KVWSEYHRLCEFFGWDKGS 120
                 79***************97 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.031
     DUF5363  11 rllekYneFckelGvdkg 28 
                 +++  Yn++c  +  dkg
  CCE31586.1 246 QVWSEYNRLCGYFRWDKG 263
                 58********98888887 PP

>> Tic110  Chloroplast envelope transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.001       4.5     397     432 ..     125     163 ..     119     179 .. 0.73
   2 ?    2.8   0.0    0.0072        32     396     432 ..     272     307 ..     265     322 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.001
      Tic110 397 vYrkrLaeavtsGeLdaaeska....avLqnlceelrFdp 432
                   rk+L++a+ + e +a + k     avLq lc++l+F p
  CCE31586.1 125 KVRKLLRQALVD-EFEAIDDKNendlAVLQRLCQRLEFSP 163
                 567888888776.55555544422228***********99 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0072
      Tic110 396 kvYrkrLaeavtsGeLdaaeskaavLqnlceelrFdp 432
                 k++r+ L +++        + k +vLq lce+l+ +p
  CCE31586.1 272 KLFRQALVDEFGA-IYGVDDNKLDVLQRLCEKLEINP 307
                 4444444444432.345678999**********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2972.87
//
Query:       CCE31587.1  [L=1716]
Description: uncharacterized protein CPUR_05440 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-31  106.8   0.0      2e-30  105.2   0.0    2.0  2  RT_RNaseH       RNase H-like domain found in reverse transcri
      4e-30  103.8   0.0    1.1e-29  102.5   0.0    1.8  1  RT_RNaseH_2     RNase H-like domain found in reverse transcri
    7.3e-25   87.8   0.0    1.2e-24   87.1   0.0    1.4  1  RVT_1           Reverse transcriptase (RNA-dependent DNA poly
    1.2e-15   57.3   0.1    2.4e-15   56.3   0.1    1.5  1  Integrase_H2C2  Integrase zinc binding domain
    1.1e-11   45.0   0.1    3.4e-11   43.4   0.1    1.8  1  rve             Integrase core domain
    1.3e-05   25.3   0.0      4e-05   23.7   0.0    1.8  1  zf-H2C2         H2C2 zinc finger
  ------ inclusion threshold ------
       0.17   11.5   0.0       0.27   10.8   0.0    1.2  1  Pox_P21         Poxvirus P21 membrane protein


Domain annotation for each model (and alignments):
>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   7.8e-34     2e-30       1     105 []     931    1037 ..     931    1037 .. 0.98
   2 ?   -3.4   0.0       4.6   1.2e+04      46      65 ..    1353    1372 ..    1331    1374 .. 0.80

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 7.8e-34
                  -TTS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS.--.EEEE-SS--TTTTT----.---H CS
   RT_RNaseH    1 dpskpfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqg.rk.ftvitDhknlkyllskkslngrl 95  
                  dp+ ++++e D+s +g+g+v+sq  +d+  rp+ f+Srkl++ae ny++++kell+i+ ++k+fr  l++ r+ ft+++Dh+nl+y+++++ l++r+
  CCE31587.1  931 DPDLETVVEADSSGYGLGGVVSQVGHDNLLRPVGFYSRKLTAAEINYQIHDKELLSIISTIKHFRGELRScRRtFTILSDHRNLQYFMTTRMLSERQ 1027
                  899*******************************************************************9778*********************** PP

                  HHHHHHC-XX CS
   RT_RNaseH   96 arWaleLsey 105 
                   rWa+eLs y
  CCE31587.1 1028 IRWAEELSYY 1037
                  *******988 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.6
                  TS-HHHHHHHHHHHHHHHHH CS
   RT_RNaseH   46 nystiekellAivaalkkfr 65  
                   ++t++ e++A v+   ++r
  CCE31587.1 1353 AMTTMDAEACARVFVNSHWR 1372
                  5789999****999999998 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   4.1e-33   1.1e-29       1      99 [.     906    1006 ..     906    1007 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 4.1e-33
  RT_RNaseH_2    1 WteeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAivwalkkfrhyllg. 95  
                   W+e +++af+++ke l+ apvLa++dpd+++++e D+S +g+g+v sq ++d+ +rp++f+Srkl++ae ny++++kell+i+ ++k+fr  l + 
   CCE31587.1  906 WDEVHQTAFDRMKEILICAPVLAMYDPDLETVVEADSSGYGLGGVVSQVGHDNLLRPVGFYSRKLTAAEINYQIHDKELLSIISTIKHFRGELRSc 1001
                   ***************************************************999************************************999886 PP

  RT_RNaseH_2   96 .rkft 99  
                    r+ft
   CCE31587.1 1002 rRTFT 1006
                   55555 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   4.8e-28   1.2e-24       2     222 .]     682     842 ..     681     842 .. 0.96

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 4.8e-28
                 E-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   2 pKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                 +K+g g+ R  +     dy+ ln++++k         + +++p +r+              l++ +ka +++klD++ aF++ +++   + + af+++ 
  CCE31587.1 682 RKPG-GGLRFcV-----DYRGLNAITSK---------DRYPLPLIRET-------------LRQLAKALHMTKLDVRAAFHRMRMALGEEWKSAFRTR- 751
                 6999.*****55.....***********.........***********.............999**********************************. PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESS.HHHHHHHHHHHHHHHHHTT-- CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililsks.keelqelleaveewlkesglk 197
                                          g+ye+ ++p+G++ +P+ f++ +n +l +       v++++Y+DD++i++++ + ++ + ++ v +++  +gl+
  CCE31587.1 752 ------------------------LGSYEWLVCPFGLTGAPAHFQRWINTVLGDALD----VFCSAYMDDVIIYTDGdEADHFAKVNLVLSRMLAAGLN 822
                 ........................79******************************8....9***************6666****************** PP

                 BEGGG-EEE.....ESSEEETTEEE CS
       RVT_1 198 inpeKtklvlftvkseevkyLGvtl 222
                 i  +K+ +       ++vkyLG+++
  CCE31587.1 823 IDLSKCAFN-----VTQVKYLGFIV 842
                 *********.....8*******975 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.1   9.6e-19   2.4e-15       3      57 ..    1241    1297 ..    1239    1298 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 9.6e-19
  Integrase_H2C2    3 kslrkeilkeaHds..agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57  
                      + lr  ++++ Hds  +gH+G+++tl+ l+r yyWp+ + +v+++v++C +C+r+k 
      CCE31587.1 1241 EPLRTALIQRTHDSyiTGHPGRDATLAILARGYYWPQQYLTVRQFVRNCAVCNRSKV 1297
                      5699**************************************************996 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.1   1.3e-14   3.4e-11       8     115 ..    1319    1425 ..    1313    1427 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 1.3e-14
         rve    8 wqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpq 103 
                  + +D++ +++  + g+  +l v+ d   + ++ ea++++ da++++++  +  +rf+g  p +++sD+gs +t + +r++++  g++++++ + +pq
  CCE31587.1 1319 IAIDFMtELPAENDGDPRFLMVISDRLLHSVTLEAMTTM-DAEACARVFVNSHWRFHGF-PAALTSDRGSNWTGRFWRRLCQLVGVEQRLSTAFHPQ 1413
                  5688888888777777999999999999999******99.******************8.************************************* PP

         rve  104 dnGkvErfhrtl 115 
                  + G  Er ++ +
  CCE31587.1 1414 TDGATERWNQEV 1425
                  ********9976 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.6e-08     4e-05       4      38 ..    1258    1292 ..    1257    1293 .. 0.95

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.6e-08
     zf-H2C2    4 tHlGinkltallarkYhwlgiketvseVissCkaC 38  
                   H G   + a+lar Y+w+ ++ tv++ +++C +C
  CCE31587.1 1258 GHPGRDATLAILARGYYWPQQYLTVRQFVRNCAVC 1292
                  6999999**************************** PP

>> Pox_P21  Poxvirus P21 membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0001      0.27       4      82 ..    1034    1111 ..    1031    1124 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
     Pox_P21    4 lsYYnlfddfsaGaGvsdkeLftkeeeesflPkkggdaeggeeslslplkg.lfsnilkrnDirsLlglilfvlaltttp 82  
                  lsYYn    f aG   +  +L ++ ++   +Pk+ +d++  e++++l  +  l + +++++ i+  +  il + a+ t +
  CCE31587.1 1034 LSYYNFTIKFRAGKDSEKPDLLSRRDQ--VMPKDASDERLNERKFQLIRDRwLTPPMVTKETIQGDICAILQISAVRTRA 1111
                  8**********************9877..7*****999999999998866658999999999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.99u 0.27s 00:00:01.26 Elapsed: 00:00:00.44
# Mc/sec: 11624.71
//
Query:       CCE31588.1  [L=514]
Description: uncharacterized protein CPUR_05441 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0039   16.9   0.0      0.014   15.0   0.0    1.8  2  Retrotran_gag_2  gag-polypeptide of LTR copia-type
      0.004   16.9   0.1      0.004   16.9   0.1    1.8  2  zf-CCHC_2        Zinc knuckle


Domain annotation for each model (and alignments):
>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.6e-06     0.014      26      89 ..      29      92 ..      24     144 .. 0.85
   2 ?   -1.8   0.0      0.26   2.3e+03      65      78 ..     293     306 ..     289     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-06
  Retrotran_gag_2 26 eektakevWdkLkelyekksaankltlrkklfslkmkegesvadhinkleelvneLsalgvkid 89
                     e  ++k+vW++Lk++++k+++a   + +   +++++++g +v    ++l+e  ++   ++++++
       CCE31588.1 29 EYNSPKAVWNALKTFFNKTDEAVASQNQTAITQFEFNDGMTVDVAWKTLKEFRRKVVGADATLK 92
                     5689****************************************99999999998888777654 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.26
  Retrotran_gag_2  65 esvadhinkleelv 78 
                      + ++dh++++++lv
       CCE31588.1 293 SHMSDHLSRFRNLV 306
                      579********997 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   4.5e-07     0.004       2      20 ..     189     207 ..     189     208 .. 0.95
   2 ?   -3.9   0.8       1.5   1.3e+04       5      10 ..     501     506 ..     501     507 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.5e-07
   zf-CCHC_2   2 pgYvChiCgkkGHyIqdCP 20 
                 +g++C +Cg++ H ++ CP
  CCE31588.1 189 EGFICLLCGQPDHPVSACP 207
                 79****************9 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.5
   zf-CCHC_2   5 vChiCg 10 
                 +C +C+
  CCE31588.1 501 ICEVCK 506
                 566675 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3610.29
//
Query:       CCE31589.1  [L=223]
Description: uncharacterized protein CPUR_05442 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-27   93.3   0.7    1.2e-26   92.3   0.7    1.5  1  CSD       'Cold-shock' DNA-binding domain
  ------ inclusion threshold ------
      0.074   12.7   0.2       0.16   11.7   0.2    1.5  1  OB_RNB    Ribonuclease B OB domain
       0.15   12.0   0.2       0.25   11.3   0.2    1.3  1  CusF_Ec   Copper binding periplasmic protein CusF


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.7     2e-30   1.2e-26       2      64 ..      10      72 ..       9      74 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 2e-30
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVt 64
                 G+Vkwfn++kg+GFIt++dg++d+FvH+ ai+ +gf+ L+egq+V+F  ++g+kg++Aa+V+
  CCE31589.1 10 AGVVKWFNDEKGYGFITPADGGADLFVHFRAIEVQGFKALKEGQAVSFVAEQGQKGMQAAQVR 72
                69***********************************************************97 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   2.6e-05      0.16       7      27 ..      19      39 ..      17      42 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.6e-05
                SSS-EEEEECT.TEEEEE-HH CS
      OB_RNB  7 kkGFGFlipdegkeDifippe 27
                +kG+GF+ p +g+ D+f++ +
  CCE31589.1 19 EKGYGFITPADGGADLFVHFR 39
                79***************9865 PP

>> CusF_Ec  Copper binding periplasmic protein CusF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   4.1e-05      0.25      32      66 ..      38      71 ..      36      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.1e-05
                EE--TTSEESS-STT-EEEEEEEEETTCEEEEEEE CS
     CusF_Ec 32 FkvadpallaglkaGdkVrFefekrdggeyvitki 66
                F++ + + +++lk+G++V+F +e+ ++g ++  ++
  CCE31589.1 38 FRAIEVQGFKALKEGQAVSFVAEQGQKG-MQAAQV 71
                55556667899**************999.777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1678.78
//
Query:       CCE31590.1  [L=260]
Description: uncharacterized protein CPUR_05443 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-26   90.8   0.0    8.6e-26   90.0   0.0    1.4  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    0.00026   20.9   0.0    0.00081   19.4   0.0    1.8  1  GST_C_2   Glutathione S-transferase, C-terminal domain
     0.0046   17.1   0.0      0.019   15.1   0.0    2.0  1  GST_C     Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
       0.04   14.3   0.0       0.45   10.9   0.0    2.5  1  GST_N     Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   1.9e-29   8.6e-26       1      99 []     129     241 ..     129     241 .. 0.93

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 1.9e-29
                 HHHHHHHHCCCC..SHCHHH.HHHHHHHHHHHHCHHHHHHHHHH.C.HGTS.SSSTTS--HHHHHHHHHHHHHHHHTCCCC-HHHH............. CS
     GST_C_3   1 hDlhhpiaklly..dqkeea.ekkkefleerlpkflkyfekvlk.k.kggg.ylvgdklTyADlalfqvldgleeaealkkfpklk............. 80 
                 h++hhp+ ++l   +qk+ea ++++ f+e+rlpk+l+y++++l+ + +g+g +l g+k+TyADl+lfq ++g+e+a     fpkl+             
  CCE31590.1 129 HETHHPVGVSLAyeEQKAEAkRRAQLFREDRLPKVLTYLQRILDgEaSGQGpWLHGGKFTYADLVLFQGMHGTEFA-----FPKLMkkmresgkydgvf 222
                 799****99995588888889************************5588888************************.....999999999999999999 PP

                 HHHHHHHTSHHHHHHHCTC CS
     GST_C_3  81 alyervearpkikaYlesr 99 
                 +lye+v +rp++k+Yl+s+
  CCE31590.1 223 KLYEAVGERPNVKKYLASD 241
                 ****************996 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.8e-07   0.00081       8      66 ..     157     237 ..     139     240 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.8e-07
                 HHHCCHCHHHCTTT--.....-SS.CTTCS--HHHHHHHHHHHHHHHHHHS-.................---TT-HHHHHH CS
     GST_C_2   8 leqldaaldaleahLa.....dspflfGdqptlaDialapflvrlraagpgf.................direaypnlraW 66 
                 +++l + l  l+++L      ++p+l G+++t+aD +l+   + +++a+p++                 +   + pn++++
  CCE31590.1 157 EDRLPKVLTYLQRILDgeasgQGPWLHGGKFTYADLVLFQGMHGTEFAFPKLmkkmresgkydgvfklyEAVGERPNVKKY 237
                 455667777777777777666788***********************9998877666666666555444444555665555 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.3e-06     0.019      26      62 ..     158     196 ..     128     240 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.3e-06
                 HHHHHHHHHHHHHHHHHH.....TSSSSSTTSSCHHHHHHHH CS
       GST_C  26 ealekvaevlsaleeelk.....kqdylvGdkltlADialvp 62 
                   l+kv  +l++    l      +  +l G k+t+AD++l+ 
  CCE31590.1 158 DRLPKVLTYLQR---ILDgeasgQGPWLHGGKFTYADLVLFQ 196
                 334444455544...33344458899*************996 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0001      0.45      10      75 ..      26      97 ..      17      98 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
                TSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGC.HHHHHHCTT........S-SSEEEETTEEEESHHHHHHHHH CS
       GST_N 10 gsprahrirlllaakgveyevvpldfeageeks.pellklnpl........gkvPaLedngkkltESraIleYia 75
                g  r + irll +++g++y  +  + ++ + ++    ++++++           PaL++++  l ++  Il Y+a
  CCE31590.1 26 G--RGEFIRLLFEEAGLPYLDTAKQ-DDDPVQRvLNITDVHNIgdknnspvLACPALIHGDVMLSQTPNILLYLA 97
                4..6666777777777777666666.4444444466666666566544444667999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1798.92
//
Query:       CCE31591.1  [L=950]
Description: uncharacterized protein CPUR_05444 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-14   52.8   0.2    2.3e-09   37.2   0.1    2.5  2  Amidohydro_3  Amidohydrolase family
    1.5e-10   40.9   0.0    6.1e-09   35.6   0.0    2.7  2  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   6.3e-06     0.057       3      32 ..     164     191 ..     163     246 .. 0.78
   2 !   37.2   0.1   2.6e-13   2.3e-09     408     469 ..     467     522 ..     455     524 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.3e-06
  Amidohydro_3   3 iDakGrlvlPGFvDsHtHlagggvnl.rllr 32 
                    Da+Grl++ G +D+H+H   +gv+    lr
    CCE31591.1 164 YDAEGRLLTTGIIDMHSH---AGVDSlPNLR 191
                   6*****************...5555444444 PP

  == domain 2  score: 37.2 bits;  conditional E-value: 2.6e-13
  Amidohydro_3 408 lsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaearvrltvvdG 469
                   l++++ala +T+ pA+ lg+  r G +++G+dAD+vv+d dpl v ++      ++++++dG
    CCE31591.1 467 LPYHAALASVTTAPAEELGMGNRLGKVKPGYDADVVVWDSDPLSVGAT------PVQVWIDG 522
                   899********************************************9......*******9 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.011        96       2      16 ..     171     185 ..     170     244 .. 0.78
   2 !   35.6   0.0   6.8e-13   6.1e-09     239     341 ..     438     522 ..     270     534 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.011
                   EEE-EEEEEEECETT CS
  Amidohydro_1   2 vlPGlIDaHvHleqs 16 
                   ++ G+ID+H H+  +
    CCE31591.1 171 LTTGIIDMHSHAGVD 185
                   677********9644 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 6.8e-13
                   TSCEEEEEECT..TSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEE CS
  Amidohydro_1 239 GvkvglgtDga..asgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgn 333
                   G+  ++++D+   ++     +l e + a+           ++gl++  al+ +T+ +A+ lg+ +++G++++G+dAD vv+d d       l+   +
    CCE31591.1 438 GLTPVYVSDNPvlNAQ---HVLFEAAKAY-----------HYGLPYHAALASVTTAPAEELGMGNRLGKVKPGYDADVVVWDSD------PLSVGAT 514
                   5555566663322222...2334555555...........9****************************************775......4566667 PP

                   EEEEEETT CS
  Amidohydro_1 334 vkkvivkG 341
                   +++v+++G
    CCE31591.1 515 PVQVWIDG 522
                   77777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 6136.73
//
Query:       CCE31592.1  [L=304]
Description: uncharacterized protein CPUR_05445 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-34  119.6   0.0    1.5e-34  119.3   0.0    1.0  1  LigB      Catalytic LigB subunit of aromatic ring-opening dio


Domain annotation for each model (and alignments):
>> LigB  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.0   8.5e-39   1.5e-34       3     250 ..      15     264 ..      13     282 .. 0.81

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 8.5e-39
        LigB   3 lllsHvppilaavdgkeqealrekvikgyesireriaeksPdtiivvsphhltdvnpvfvlgvaeefeaiddfg...kflprleyelkgnpeLaekiae 98 
                 + lsH+   l   +  +++a+ +++ +   +i +     +P++ ++v++h+ td++++   +   + e  +d++   + ++ ++y++kg+p La++i++
  CCE31592.1  15 IALSHGGGPLPLLGDRNHDAIVSSLRNKVPQILRLGTPSAPKAMVLVTAHWSTDIPSI---SSSTHHELYYDYYgfpPEAYTIKYPAKGDPTLASEIKH 110
                 5667754433333324444433333333344444444449*************99955...777788899999999999******************** PP

        LigB  99 alkksgidlavesnsmklDHGtlvPLelmlpdeakvpvikvslntvaypllsferlykLGeAlrkaveeldknvlilgsGgls.Hqlegdeaakadaq. 195
                 +l+++g  ++  + s++ DHG++vPL+l++p  a +pv+++s+        ++e++ ++G+Alr ++   ++n++++gsG +s H++++++   a    
  CCE31592.1 111 LLEQEGLSAQL-DASRGWDHGVFVPLSLINP-AADIPVVQLSVLE----SENPEEHLRMGKALRGLR---ERNIAVVGSGFASlHNMRELMGLRAGNAa 200
                 *********99.*******************.899********99....89****************...9*********9998**9998755444446 PP

        LigB 196 .......tlllneefdeelldllkegrveelckmskeelsaaaghe...eeelvplvvalGalsg 250
                          ++n ++ + ++ + +++r++ l++++      ++ h+   +e+++plvv +Ga+++
  CCE31592.1 201 rtgfkvlSDEWNGALTKAVMARSESERWTGLMGWRGLPH-SERMHPlggGEHFMPLVVCAGAAGD 264
                 7899986677999999999999999**********5544.44447554789************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2408.30
//
Query:       CCE31593.1  [L=303]
Description: related to stress response protein rds1p [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-43  148.8   2.5    1.5e-43  148.3   2.5    1.2  1  Ferritin_2  Ferritin-like domain


Domain annotation for each model (and alignments):
>> Ferritin_2  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3   2.5   8.2e-48   1.5e-43       2     134 ..      33     166 ..      32     168 .. 0.98

  Alignments for each domain:
  == domain 1  score: 148.3 bits;  conditional E-value: 8.2e-48
  Ferritin_2   2 dvdiLnfAlnlEyleaafYtaalegasldd..kalldaevrevaeeiakheeaHveflkaale..GaaavakptfdfafdpfadeksflalaavlEdvg 96 
                 d+ iLn+Al+lE+le +fY ++l++++++d  +a++da  ++ ++e+ k+e +Hv fl++al+  Ga++va++t++f    ++d k+fla+a +lE vg
  CCE31593.1  33 DAVILNYALTLEHLEDTFYREGLAKYTEQDfaSAGFDAVFYNNIKEVSKDESEHVGFLTTALKaaGAEPVAACTYNF---GYNDVKTFLATASILEGVG 128
                 889**************************************************************************...******************* PP

  Ferritin_2  97 vsAYlgaapllsnkelltaaasIlsvEArHaavirtll 134
                 vsAYlgaa+ + +k++ltaa+sIl+vEArH+++ir+ l
  CCE31593.1 129 VSAYLGAAADIMSKTYLTAAGSILTVEARHSSYIRSGL 166
                 ***********************************855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2484.07
//
Query:       CCE31594.1  [L=460]
Description: uncharacterized protein CPUR_05447 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-12   45.0   0.1    2.3e-11   43.8   0.1    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.1e-10   41.4   0.0    5.2e-10   39.2   0.0    1.8  1  Amino_oxidase   Flavin containing amine oxidoreductase
    2.4e-09   37.1   0.1    3.6e-09   36.5   0.1    1.2  1  FAD_oxidored    FAD dependent oxidoreductase
      3e-07   29.9   1.4    4.3e-07   29.4   1.4    1.2  1  FAD_binding_2   FAD binding domain
    4.9e-07   28.8   0.4    8.4e-07   28.0   0.4    1.3  1  HI0933_like     HI0933-like protein
    5.8e-07   29.4   0.8      1e-06   28.6   0.8    1.4  1  DAO             FAD dependent oxidoreductase
    1.3e-05   24.6   0.3    2.4e-05   23.8   0.3    1.4  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00074   18.8   0.3     0.0012   18.1   0.3    1.2  1  Thi4            Thi4 family
    0.00081   19.9   0.4     0.0023   18.5   0.3    1.8  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00082   18.6   0.6     0.0014   17.8   0.6    1.3  1  GIDA            Glucose inhibited division protein A
     0.0018   17.6   0.4     0.0047   16.2   0.3    1.6  2  FAD_binding_3   FAD binding domain
     0.0066   15.3   0.4       0.01   14.7   0.4    1.2  1  Trp_halogenase  Tryptophan halogenase
     0.0098   15.2   0.1      0.017   14.4   0.1    1.3  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.016   14.8   2.0       0.05   13.2   0.7    2.1  2  ApbA            Ketopantoate reductase PanE/ApbA
       0.24   10.4   0.3       0.41    9.6   0.3    1.3  1  Lycopene_cycl   Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1   1.9e-14   2.3e-11       1      54 [.      34      88 ..      34      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.9e-14
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE.TTCEECTS---EEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev.pgvrvdygahifhg 54
                   ++G+G++G++aA  L+k+g++v l+ek d lGG+a +  + +g+ +dyg+  ++ 
     CCE31594.1 34 VLGGGATGMYAAVQLTKQGHSVALVEKKDILGGHAETLYLpDGQHIDYGVEGYFN 88
                   89************************************99557******988876 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   4.3e-13   5.2e-10       2     291 ..      40     327 ..      39     337 .. 0.78

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 4.3e-13
                    HHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEET.TEEEESS--EEETTTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECCTTEECHH.HH CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGRirtvrsd.GylielGamwftgagnpllellkelgledslslpdpgapkrvlskggrefpgdlspv.pa 95 
                    +G+ aA qL+ +G++V ++E +d +GG++ t +++ G++i+ G   +++ ++ +  l+  lg+e++l lp +     v +++g+++pg+ + +   
     CCE31594.1  40 TGMYAAVQLTKQGHSVALVEKKDILGGHAETLYLPdGQHIDYGVEGYFN-NDLTKDLFSLLGVEHELLLPASFETQHVNFRTGKKVPGNSNILgVI 134
                    7************************************************.***********************99999999999987777777555 PP

                    HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTTTTCBHHHHTCC CS
  Amino_oxidase  96 ewealleqgalsaellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdpselsaklalpl 191
                    + +al +      + ++  + l  g            d+  + l+  ++e+ ++ + +  +   ++     +   +++ l+    ++l+    +  
     CCE31594.1 135 GGAALYR------AAIQKYDYLATGAYY-------LPDPVPEELLRPFREFVEKYFLHGSLAVIFMFA---E---NVGNLLDT--PLLYVIQNFGI 209
                    5444444......333344444444444.......559999999999999999999995553333332...2...33333332..78888888888 PP

                    CCHHHHHTSCCCEETTHTHHHHHHHHH.TTTTEEEETSEEEEEEEE.ETTCEEEEETTSTEE.....EESEEEE-S-HHHHH..........SSEE CS
  Amino_oxidase 192 lwelegfggslllprgGlsqlpealae.elrgldirlntrVkeikr.egdgvtvtledgevv.....eaDaVvvTvplgvlk..........ailf 270
                     +     +g+ ++p++G ++l +  a+    +++i +++ V+  +r   +gv +t+++++       +a++ ++T p+   +            lf
     CCE31594.1 210 PQINALLSGGYIRPQNGTQELFRKAAAyIGEEKNIFYSSTVSHATRdATNGVELTIQNSNGGppttiKAKKLLITYPPTMDSmkpfdlqeqeSSLF 305
                    88888889999999*************656677999999999999978888****999999999999********999877755666666666666 PP

                    ES.CCSHHHHHHHHHSEEEEEE CS
  Amino_oxidase 271 sP.plpdekaeairnlgfgsvn 291
                    s    +   a+ai + g+++vn
     CCE31594.1 306 SKwDTKSYYAAAITKTGLPNVN 327
                    6655555666666666666665 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1     3e-12   3.6e-09       1      38 [.      31      68 ..      31     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 3e-12
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGll 38
                  DvvV GGg+ G+ AA++  ++G +v+Lve+++ lGG +
    CCE31594.1 31 DVVVLGGGATGMYAAVQLTKQGHSVALVEKKDILGGHA 68
                  9***********************************86 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   1.4   3.6e-10   4.3e-07       1      38 [.      31      68 ..      31      70 .. 0.96

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 3.6e-10
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38
                   Dv+V G+G+ G+ AA++++++G++va+vek++  gg++
     CCE31594.1 31 DVVVLGGGATGMYAAVQLTKQGHSVALVEKKDILGGHA 68
                   9*******************************999986 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.4     7e-10   8.4e-07       2      36 ..      31      65 ..      30      67 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 7e-10
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 dv+v+GgGa G++aA+++ k+g++V+l+ek++ lg
   CCE31594.1 31 DVVVLGGGATGMYAAVQLTKQGHSVALVEKKDILG 65
                 8*****************************98776 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.8   8.7e-10     1e-06       1      36 [.      31      68 ..      31      70 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 8.7e-10
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36
                dvv+ GGG +G+ +A +L+++g  V+l+ek+di+g +a
  CCE31594.1 31 DVVVLGGGATGMYAAVQLTKQGhsVALVEKKDILGGHA 68
                9********************99***********9665 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.3     2e-08   2.4e-05     123     178 ..      10      65 ..       3      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2e-08
                  BEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 123 vgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  vg l+ tl+sa   + +   +++vv GgG++G+  A +l+k g+ v lve  d+l 
   CCE31594.1  10 VGALLATLTSAATTQNQTIVRDVVVLGGGATGMYAAVQLTKQGHSVALVEKKDILG 65 
                  56677888999999988888999999999999999999999999999999988875 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.3     1e-06    0.0012      12      56 ..      24      67 ..      15      70 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1e-06
                HHHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4 12 llkyaesDvvivGaGssGLtaayylakkpdlkvailersvspGGG 56
                  + ++ Dvv+ G+G++G+ aa  l+k+ +  va++e++  +GG 
  CCE31594.1 24 QNQTIVRDVVVLGGGATGMYAAVQLTKQ-GHSVALVEKKDILGGH 67
                4566789*********************.*********9999885 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.3   1.9e-06    0.0023       2      35 ..      32      65 ..      31      73 .. 0.92
   2 ?   -2.8   0.0         8   9.6e+03      49      63 ..     110     124 ..      99     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.9e-06
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                vvv+GgG +g+ +A  l++ g++V +ve +d l 
  CCE31594.1 32 VVVLGGGATGMYAAVQLTKQGHSVALVEKKDILG 65
                8*****************************9876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8
                 HHHHTTEEEECSEEE CS
   Pyr_redox  49 klekngievllntkv 63 
                 ++e +++++++++kv
  CCE31594.1 110 SFETQHVNFRTGKKV 124
                 68899999*999987 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.6   1.1e-06    0.0014       1      30 [.      31      60 ..      31      73 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.1e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLith 30
                dv+V+GgG  G+ AA+++ + G++v+L+ +
  CCE31594.1 31 DVVVLGGGATGMYAAVQLTKQGHSVALVEK 60
                79*************************943 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.3   3.9e-06    0.0047       3      33 ..      31      61 ..      30      76 .. 0.94
   2 ?   -2.5   0.0         2   2.4e+03     103     156 ..     223     279 ..     220     281 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.9e-06
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekr 33
                   dV++ G+G +G+ +a  L+++G +v lvek 
     CCE31594.1 31 DVVVLGGGATGMYAAVQLTKQGHSVALVEKK 61
                   89***************************97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2
                    -HHHHHHHHHHHHHHHT..EE.ETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEE CS
  FAD_binding_3 103 pqteleriLvehaeerg..lq.vrfktevesleqdeegvtaevrdketgeeetvrak 156
                    pq+ ++ + +++a+  g   + ++ +t  ++ ++ ++gv+ ++++++ g  +t++ak
     CCE31594.1 223 PQNGTQELFRKAAAYIGeeKNiFYSSTVSHATRDATNGVELTIQNSNGGPPTTIKAK 279
                    788888888888887775323245556677777778899999999999999999987 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.4   8.4e-06      0.01       1      36 [.      31      63 ..      31      67 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.4e-06
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseei 36
                    ++v++GGG  G  aA  l k++   ++v lve+++i
      CCE31594.1 31 DVVVLGGGATGMYAAVQLTKQG---HSVALVEKKDI 63
                    69********************...99******998 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.4e-05     0.017     160     198 ..      25      63 ..       7      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
  Pyr_redox_3 160 hkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgse 198
                  +++  ++vvV Gg+ +++ aA++l ++g++V +v +++ 
   CCE31594.1  25 NQTIVRDVVVLGGGATGMYAAVQLTKQGHSVALVEKKDI 63 
                  455567999999999999999999999999999998875 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.7   4.2e-05      0.05       1      30 [.      32      61 ..      32      66 .. 0.92
   2 ?   -0.1   0.0      0.54   6.4e+02     102     140 ..     224     264 ..     221     270 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.2e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SC CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrs 30
                +++lG Ga G + a++L+k+g+ v l+ ++
  CCE31594.1 32 VVVLGGGATGMYAAVQLTKQGHSVALVEKK 61
                689**********************99765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.54
                 SSSSCHH.HHHTTTSTTS.EEEEEEEE-EEEEEETTEEEEC CS
        ApbA 102 qNGlghe.eelrealpkp.rvlggvtthgatregpgevhha 140
                 qNG + + ++ +++++++ ++++  t   atr++++ v+++
  CCE31594.1 224 QNGTQELfRKAAAYIGEEkNIFYSSTVSHATRDATNGVELT 264
                 8998888788888888877*****99999999998777665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   0.00035      0.41       1      33 [.      31      61 ..      31      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00035
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieas 33
                   Dvvv G+G+ g+  A +l   k+g +v l+e  
     CCE31594.1 31 DVVVLGGGATGMYAAVQL--TKQGHSVALVEKK 61
                   9*****************..9999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.36
# Mc/sec: 3802.67
//
Query:       CCE31595.1  [L=560]
Description: probable general amino acid permease [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.5e-100  337.0  39.1   1.8e-100  336.8  39.1    1.0  1  AA_permease    Amino acid permease
    2.3e-33  115.7  42.3    2.8e-33  115.4  42.3    1.1  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
      0.045   14.0   0.7        1.2    9.4   0.1    2.4  2  DUF1612        Protein of unknown function (DUF1612)


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.8  39.1  3.1e-104  1.8e-100       1     469 [.      63     518 ..      63     526 .. 0.97

  Alignments for each domain:
  == domain 1  score: 336.8 bits;  conditional E-value: 3.1e-104
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ial+g iGtglf+++g +l+++Gplg+ll+y+++g +i +v+ s++e++ + p sgg+   a+ f +p+l+f+ G+n ++  ++ l++e++a++
   CCE31595.1  63 HIQMIALAGTIGTGLFLATGRALANGGPLGILLGYAIVGCIISFVVFSMAELSALLPLSGGIIRHAEYFFDPALAFAQGWNSVYANAILLPAEMVACA 160
                  9************************************************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                   +i +w   ++++   v+++v+ ++l++ n++ + vyge ef+la++ki  i+++ i++i++ ag++p  ++ gf+f++d+g +++   +pg    + 
   CCE31595.1 161 VIIDYW---SHVN-HAVWITVLGGLLIFSNFLLISVYGELEFVLAILKIALIVGVNILSICITAGAGPRGKPiGFQFWKDPGPFVQYLNIPG----SW 250
                  ******...8888.899*******************************************999999999999***********666655666....89 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlapli 292
                  g+f +f  v+v ++ af+  e++ ++++E+++P+++iPka ++v++ri++fY+  +++igl+v+  d+ l++ s +a aspf i+ +++g++v++++i
   CCE31595.1 251 GQFVGFWRVLVSAAYAFSNVENISVAGAETQNPRQNIPKAAKRVFWRIFLFYLATVFCIGLIVSSADKALTARSGDAgASPFAIAATNAGIKVVPSII 348
                  99**********************************************************************999999******************** PP

  AA_permease 293 naviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrf 390
                  na++ t+a+s++ns++ +++R+ly la dg+aP ++k+ ++ g P+ +++++  + ll++l  s++++  +vf +l  ++ ++ ++ w+ i + ylrf
   CCE31595.1 349 NAIVVTSAWSAGNSAMLVGTRTLYGLALDGHAPPFFKRTNRFGTPWISVAAVGSFMLLGYLTLSSAAS--VVFGWLQGLVSAASFVHWINIEIIYLRF 444
                  ************************************************************99999999..**************************** PP

  AA_permease 391 Rkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklh 469
                      ++qg+s +el+ k++++p+g++l+l++ ii+ll+ ++  ++      ++w++++f+ ay +v+l+l++++g+k +
   CCE31595.1 445 FYGCRKQGISRDELPWKSPFQPYGAWLALVMAIILLLTGGFHVFID-----GQWNWQTFVTAYFNVPLILVLYFGYKSW 518
                  ******************************************9988.....9************************977 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4  42.3   4.6e-37   2.8e-33       8     417 ..      66     500 ..      59     512 .. 0.75

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 4.6e-37
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    ++++  +ig+g f ++  ++a+ggp+ il +  +v++++  v++ +aEls++lp sgGi+  ++++f + +af  +w +++a ++ l++ ++++a 
     CCE31595.1  66 MIALAGTIGTGLFLATgrALANGGPLGILLGYAIVGCIISFVVFSMAELSALLPLSGGIIRHAEYFFDPALAFAQGWNSVYANAILLPAEMVACAV 161
                    6777888******999999999***9888888778887778************************************************9999998 PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdg..ggfsslstetdt........ffpngw 187
                     + ++   ++++  w+t+l + +i+      n + i+ ++ + ++l+ilki l++ + i+  +it+++  +g +   + ++           p+ w
     CCE31595.1 162 IIDYWS--HVNHAVWITVLGGLLIF-----SNFLLISVYGELEFVLAILKIALIVGVNILSICITAGAgpRGKPIGFQFWKDpgpfvqylNIPGSW 250
                    888854..57788888888666655.....566666888899*********999999998888888662234443333333344444443344444 PP

  AA_permease_2 188 pg...vllgllivlwsfdGfesaanvseevkk..kdvpkai..figllivlvlyllvniaflgvvpddeianlsn..lgsvaalffeavggkvvai 274
                     +   ++++l  ++++f+ +e++++   e ++   ++pka+  ++  ++ + l +++ i ++  + d+ ++  s+    s++a+ + ++g kvv +
     CCE31595.1 251 GQfvgFWRVLVSAAYAFSNVENISVAGAETQNprQNIPKAAkrVFWRIFLFYLATVFCIGLIVSSADKALTARSGdaGASPFAIAATNAGIKVVPS 346
                    43433599*********************7777359*****6666666666666778888888888888855444334567*************** PP

  AA_permease_2 275 ivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisylll.iiga 369
                    i++++++ s++ a+n+a++  +r+l+ la dg  P ff+++n+fg+p+ ++  +  + l+ +l ++ a s  + +l  + s ++++ ++ + ii++
     CCE31595.1 347 IINAIVVTSAWSAGNSAMLVGTRTLYGLALDGHAPPFFKRTNRFGTPWISVAAVGSFMLLGYLTLSSAASVVFGWLQGLVSAASFVHWINIeIIYL 442
                    *********************************************************866555444443778889988888888887777755555 PP

  AA_permease_2 370 lilrkkrphl.kr..........pgkilvaiigalfllfllvalffppkgpatqssliy 417
                     + + +r++   r          p+ +++a+++a++ll++  +  f+ +g+ +++++ +
     CCE31595.1 443 RFFYGCRKQGiSRdelpwkspfqPYGAWLALVMAIILLLTGGFHVFI-DGQWNWQTFVT 500
                    55555555444556774344444333334444444444444333332.44444444433 PP

>> DUF1612  Protein of unknown function (DUF1612)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00021       1.2      15      57 ..     141     184 ..     137     206 .. 0.86
   2 ?    2.4   0.0      0.03   1.8e+02      24      41 ..     342     359 ..     335     364 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00021
     DUF1612  15 eWravlaeaeelPpvl.aaavlldaWeelevlqrqpwlgrlLaa 57 
                  W +v a+a  lP+ + a av++d W++++     + lg+lL+ 
  CCE31595.1 141 GWNSVYANAILLPAEMvACAVIIDYWSHVNHAVWITVLGGLLIF 184
                 6************9651679********9999999999999875 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.03
     DUF1612  24 eelPpvlaaavlldaWee 41 
                 + +P++++a+v+  aW++
  CCE31595.1 342 KVVPSIINAIVVTSAWSA 359
                 678*************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3882.04
//
Query:       CCE31596.1  [L=742]
Description: uncharacterized protein CPUR_05449 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00013   22.1   0.2    0.00068   19.8   0.0    2.1  2  DUF4449   Protein of unknown function (DUF4449)
     0.0031   17.9   0.2      0.053   14.0   0.1    3.0  2  DUF4208   Domain of unknown function (DUF4208)


Domain annotation for each model (and alignments):
>> DUF4449  Protein of unknown function (DUF4449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2      0.21   1.9e+03      79     118 ..     199     235 ..     156     259 .. 0.57
   2 !   19.8   0.0   7.6e-08   0.00068       1      60 [.     595     654 ..     595     661 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.21
     DUF4449  79 sryldalkkkftkkkekaeekekakkadkkvniavtkeds 118
                 s+ ++alkk+ ++++ +a     +  ++k++++a ++ d+
  CCE31596.1 199 SKDIEALKKTDSHSQPDASV---EDVKNKTAEVAANALDE 235
                 45555555544444444444...23445555555444443 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 7.6e-08
     DUF4449   1 vdvdnLkiklkkSkHklLfklfKPlllkvirpaiqkalekqirdaleklDaelyevkqea 60 
                 v++++++ +l kSk++ +  l+KPl+  ++r++++  ++ +i d+l  l +el+  +++ 
  CCE31596.1 595 VQIHHFNYTLSKSKFSCITWLLKPLIRPILRKTLEYQISRGIEDGLRTLNRELVFARERL 654
                 79**************************************************99777765 PP

>> DUF4208  Domain of unknown function (DUF4208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   5.9e-06     0.053       3      83 ..     248     332 ..     246     344 .. 0.73
   2 ?   -0.2   0.0      0.15   1.3e+03      14      48 ..     375     408 ..     364     433 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.9e-06
     DUF4208   3 desmdeeeckellrpvkksLkrLkkltkekllskkerakilkkeL...lkiGdfIdellkekke..ekkeklkkhlWefvskfwpk 83 
                 +++m+ee+ + l++ +kk+  +L++  +  + s +     l+++L   l+iG++  ++++e+ +  ++ ++  +++W fvs+f +k
  CCE31596.1 248 RDHMNEESRNILISRLKKAVGNLRQRPDY-TESVSTMSTLLQRYLqiyLAIGTEAAQTVEETIQpnREAHRAAHNFWLFVSSFGDK 332
                 56778887777778888888888876433.24444444555555533379***********9999889999************884 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.15
     DUF4208  14 llrpvkksLkrLkkltkekllskkerakilkkeLl 48 
                 ++ +v+ +L +L++  k+ + s ++  + l++ L+
  CCE31596.1 375 FFDDVEAHLDELREKLKS-MNSGSSIGHDLNDVLT 408
                 455666666666655443.4555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4957.15
//
Query:       CCE31597.1  [L=578]
Description: related to pyruvate decarboxylase [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-31  109.0   1.8    2.1e-31  108.8   0.5    1.7  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    9.9e-19   67.4   0.0    2.6e-18   66.1   0.0    1.7  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
    2.1e-17   63.3   0.0    1.4e-16   60.6   0.0    2.1  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.5   3.5e-35   2.1e-31       2     166 ..       5     173 ..       4     178 .. 0.93
   2 ?   -2.5   0.0      0.55   3.3e+03      76     106 ..     419     449 ..     401     470 .. 0.61

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 3.5e-35
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   ++ae+l+ +L++lgve++ gvpG+ +l +ld+++ + g+++v   +E +aa+aAdgyar++g +g++++t g+G ++a++a+a+A+ +  P+++++g
    CCE31597.1   5 KLAEYLFTRLRQLGVESIHGVPGDFNLTMLDYVEPA-GLTWVGNANELNAAYAADGYARIKG-LGAIVTTFGVGELSAINAIAGAYAEFAPVVHVVG 99 
                   689*********************************.7**********************87.********************************** PP

                   E--CCCHH.....S..TC--T..-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC- CS
  TPP_enzyme_N  99 drptslrg.....qgvlqqel..dqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlle 166
                    ++++l++     ++++++      +++++ vt +++++ +p + ++++++ ++t+   +++Pvy+elp d++++
    CCE31597.1 100 VPSRELQDertmmHHTFKDGNyeRFAQMAALVTVAQTKLWDPVTSAQQVDDILATC-LLQCRPVYIELPVDMVDA 173
                   ********98877666665547667777889999**********************.9*************9986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.55
                   HHHCHHHHHHHHHHT--EEEEEEE--CCCHH CS
  TPP_enzyme_N  76 atnaltalaeAkvdriPllvlsgdrptslrg 106
                   +  +l+a+ +A++++  l + s +++ ++ +
    CCE31597.1 419 IGYMLPAAQGAALAQKELMAASQWHGLHRAK 449
                   4456666666666666666666666665555 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   4.4e-22   2.6e-18       2     125 ..     203     326 ..     202     338 .. 0.90
   2 ?   -2.7   0.0      0.75   4.5e+03      76     118 ..     446     490 ..     438     503 .. 0.56

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 4.4e-22
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   ++++  +++ak+p+i+v+g+ +  +  ++l+e++ ++++P +t++ gkg+++e++ +y g + g  g++a++e +++aDlvl++G +f+ ++t+  +
    CCE31597.1 203 SEILRKMESAKQPIIYVDGESRPLRILDDLQEFVSATKWPTFTSPFGKGLVEETERNYHGvYQGQWGHPAVHEFVKSADLVLCFGPHFSGTNTYM-W 298
                   5788999***************99************************************9*****************************77775.6 PP

                   TTTTTT-.EEEEEESSCCCCTTCC--SEE CS
  TPP_enzyme_M  98 pefapea.kiihididpaeigknyqvdla 125
                   + ++ ++ ++i ++ +  +ig   + d++
    CCE31597.1 299 SSIP-QGgEMISFTASGVKIGEELHRDIP 326
                   5555.5559***********998887776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.75
                   HH-SEEEEES-SSSTCCCTTTTTTTTTT-...EEEEEESSCCCCTT CS
  TPP_enzyme_M  76 eeaDlvlalGarfddirttgsepefapea...kiihididpaeigk 118
                   ++a ++l++G    +  t+++ +++ +++    i+ i+ d  +i +
    CCE31597.1 446 HRAKTILFIGDGSFQ-MTVQEISTMIKHNldiLIVLINNDGYSIER 490
                   566677777744323.344444444444331234666666666665 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.12     7e+02      96     152 ..     110     165 ..      91     166 .. 0.69
   2 !   60.6   0.0   2.3e-20   1.4e-16      17     152 ..     406     550 ..     392     551 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.12
                   TCCTTTTSBB.BS----HHHHHHHTTSEEE.EESSH.HHHHHHHHHHHHCSSSEEEEE CS
  TPP_enzyme_C  96 ggkrksgpagkdlkpvdfaklaealGakga.rvekadveeleealkealekkgpalie 152
                   ++ +++ ++g+ ++  ++a+l+  +  k    v++a  ++++++l+++l + +p++ie
    CCE31597.1 110 TMMHHTFKDGNYERFAQMAALVTVAQTKLWdPVTSA--QQVDDILATCLLQCRPVYIE 165
                   333444444444555556666666666644777888..9*********9999999997 PP

  == domain 2  score: 60.6 bits;  conditional E-value: 2.3e-20
                   SSSEEECETTTS-TTTHHHHHHHHHH....H........STTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTT CS
  TPP_enzyme_C  17 rprsyltsgglgtmGyglpaAiGakl....a........kpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfggkrks 101
                   +  + +t+ ++ ++Gy lpaA Ga+l    +          +++ + ++GDG+f+m++qe++t++++nl+i++v++nN gy   +  + ++ + +  
    CCE31597.1 406 KHCQAFTHVTWLSIGYMLPAAQGAALaqkeLmaasqwhgLHRAKTILFIGDGSFQMTVQEISTMIKHNLDILIVLINNDGYSIERFIHGRKQAYN-- 500
                   4455666778999*************65550556666443368**************************************99887644443322.. PP

                   TSBB.BS----HHHHHHHTTSE.EE.EESSH.HHHHHHHHHHHH..CSSSEEEEE CS
  TPP_enzyme_C 102 gpagkdlkpvdfaklaealGak.ga.rvekadveeleealkeal..ekkgpalie 152
                        d    ++ +  + +Ga+    + +  ++ el+++l+     + kg +++e
    CCE31597.1 501 -----DVARWRYLEAPRLFGAPdDTfTASAGTWGELRAVLQNEKvsKVKGLCMVE 550
                   .....24556777777777777633477777777777777766555666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 4055.97
//
Query:       CCE31598.1  [L=150]
Description: uncharacterized protein CPUR_05451 [Claviceps purpurea 20.1]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.048   13.3   9.3        0.2   11.3   6.3    2.6  2  PikAIV_N         Narbonolide/10-deoxymethynolide synthase Pik
       0.31   11.5   5.6       0.42   11.0   5.6    1.2  1  RNA_pol_Rpc4     RNA polymerase III RPC4
       0.35   11.6   3.5       0.47   11.2   3.5    1.1  1  Pal1             Pal1 cell morphology protein
       0.62   10.1   5.8       0.79    9.7   5.8    1.3  1  TMEM247          Transmembrane protein 247
        1.1    9.3   5.6        1.3    9.1   5.6    1.1  1  DDHD             DDHD domain
        2.5    8.2  13.1        3.2    7.8  13.1    1.1  1  DUF5094          Domain of unknown function (DUF5094)
        3.2    5.0   8.0        3.6    4.9   8.0    1.0  1  FancD2           Fanconi anaemia protein FancD2 nuclease
        3.8    7.2   9.0        4.6    7.0   9.0    1.1  1  Band_3_cyto      Band 3 cytoplasmic domain


Domain annotation for each model (and alignments):
>> PikAIV_N  Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.067   1.5e+02      16      21 ..     125     130 ..     124     131 .. 0.90
   2 ?   11.3   6.3     9e-05       0.2      16      27 ..     135     146 ..     134     148 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.067
    PikAIV_N  16 EnERLR 21 
                 E+ERLR
  CCE31598.1 125 EIERLR 130
                 9****9 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9e-05
    PikAIV_N  16 EnERLRqqNrrL 27 
                 EnERLR++N++L
  CCE31598.1 135 ENERLRRENEEL 146
                 9*********99 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.6   0.00019      0.42      10      70 ..      33     118 ..      30     136 .. 0.48

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
  RNA_pol_Rpc4  10 PpllPslkq............................kavsaaeddkseaesqsaekakaeeeskaekasgaeaeekkskkksskkkkk 70 
                   P++lP+ ++                            ka+++a+d  ++++++s++++ ++ +++++ka+++e+e+k++    +++k++
    CCE31598.1  33 PNPLPTTNNlrnrapfeaaagehrsevlgvilkahkaKATKEAQDRRNRNAQSSKRSRIQKSAEEKAKATKKEQEMKQEL---EDAKSE 118
                   88899977799999999999988888888887655442222222222222222222222222222222222222222111...112222 PP

>> Pal1  Pal1 cell morphology protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   3.5   0.00021      0.47      27     115 ..      37     125 ..      33     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
        Pal1  27 phrNknskaaPvlAfpkdgannslggagklnkksaldevfGredeeddkdlaklsakakkkessetkaakksskevtafdsktkaelvh 115
                 p +N+ +++aP  A + +  ++ lg   k +k +a++e+  r+++++++++ +  +k+++++++ tk+ ++ ++e+    s+++ + v+
  CCE31598.1  37 PTTNNLRNRAPFEAAAGEHRSEVLGVILKAHKAKATKEAQDRRNRNAQSSKRSRIQKSAEEKAKATKKEQEMKQELEDAKSESRRKDVE 125
                 77898899******************999999999999999999888888655555555555555566666677777777766666665 PP

>> TMEM247  Transmembrane protein 247
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.8   0.00035      0.79      86     137 ..      94     148 ..      38     150 .] 0.61

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00035
     TMEM247  86 gpelvelpeapgierkaeme...lekvrmefeltrlkylheenerqrqheevmeq 137
                 + e +  +++++ e k+e+e    e  r + e+ rl+ + +ener r+ +e ++q
  CCE31598.1  94 SAEEKAKATKKEQEMKQELEdakSESRRKDVEIERLRGVDAENERLRRENEELKQ 148
                 2222222333344444444311134568889**************9988776655 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.6    0.0006       1.3     119     186 ..      53     123 ..       8     147 .. 0.36

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0006
        DDHD 119 s........lelaeeesaslaessksherasesskasqeskaaesstasssaksskaeekvelekvralnwwgRiD 186
                            l+  ++++++e++ + +r+++ssk+s+ +k+ae++++++   ++++e k+ele+  a+++++R D
  CCE31598.1  53 GehrsevlgVILKAHKAKATKEAQDRRNRNAQSSKRSRIQKSAEEKAKAT---KKEQEMKQELED--AKSESRRKD 123
                 02222222211222222222233333333333333333322222222222...222223333333..223333333 PP

>> DUF5094  Domain of unknown function (DUF5094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  13.1    0.0014       3.2      18      96 ..      70     148 ..      56     150 .] 0.60

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0014
     DUF5094  18 kkknklssknlkekenvkvkeaeekkeekvtstkenkenekqdkd.sllkeikdienelieaykeeNeyLrslknevllt 96 
                 k+ +++++  +++++  k + +++ +eek++ tk+++e +++ +d ++    kd+e e +    +eNe Lr  +ne+l++
  CCE31598.1  70 KATKEAQDRRNRNAQSSKRSRIQKSAEEKAKATKKEQEMKQELEDaKSESRRKDVEIERLRGVDAENERLRR-ENEELKQ 148
                 222333333333333455566666666666666666555555544566677789999999999999999997.5555544 PP

>> FancD2  Fanconi anaemia protein FancD2 nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   8.0    0.0016       3.6     854     918 ..      63     126 ..      38     135 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0016
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----H CS
      FancD2 854 ssaavaakkkkkekagkkrkadaskassadksqkeeaseaeeseseksqlekekekkeekesvsl 918
                    a +ak +k+ +  ++r a++sk+s  +ks +e+a+ +++ ++ k++le  k++  +++ v++
  CCE31598.1  63 ILKAHKAKATKEAQDRRNRNAQSSKRSRIQKSAEEKAKATKKEQEMKQELEDAKSE-SRRKDVEI 126
                 34445556666667788999999999999999888888888888888888877666.44555555 PP

>> Band_3_cyto  Band 3 cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   9.0    0.0021       4.6      63     135 ..      54     128 ..      46     150 .] 0.56

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0021
                  HHHHHHHHHHTS-EE-CCHHHHHT..-EEE-EE-TTS----------EE--SSS-SS-HHHHHHTTTTTSS--.. CS
  Band_3_cyto  63 edreevlraLLlkhrHqneekekg..vllptvrslssigsllsekkkaskellskqssleteeakaseslsksss 135
                  e+r+evl ++L+ h+ +  +++++  +      + s i+++++ek ka+k++++++++le ++++++++  + + 
   CCE31598.1  54 EHRSEVLGVILKAHKAKATKEAQDrrNRNAQSSKRSRIQKSAEEKAKATKKEQEMKQELEDAKSESRRKDVEIER 128
                  799*********999877744443004444444555555555555566666666666666655555555443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3292  (0.183613); expected 358.6 (0.02)
Passed bias filter:                      962  (0.0536561); expected 358.6 (0.02)
Passed Vit filter:                       197  (0.0109878); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              1